BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|255764511|ref|YP_003065518.2| S-adenosyl-methyltransferase MraW [Candidatus Liberibacter asiaticus str. psy62] (341 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|255764511|ref|YP_003065518.2| S-adenosyl-methyltransferase MraW [Candidatus Liberibacter asiaticus str. psy62] gi|254547862|gb|ACT57578.2| S-adenosyl-methyltransferase MraW [Candidatus Liberibacter asiaticus str. psy62] Length = 341 Score = 701 bits (1808), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/341 (100%), Positives = 341/341 (100%) Query: 1 MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN 60 MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN Sbjct: 1 MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN 60 Query: 61 VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDC 120 VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDC Sbjct: 61 VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDC 120 Query: 121 GDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 GDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR Sbjct: 121 GDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 Query: 181 QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK Sbjct: 181 QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV Sbjct: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300 Query: 301 AFNRRSRSAKLRAGMRTVERSIEDDSFVHLPRLPTLSQFRG 341 AFNRRSRSAKLRAGMRTVERSIEDDSFVHLPRLPTLSQFRG Sbjct: 301 AFNRRSRSAKLRAGMRTVERSIEDDSFVHLPRLPTLSQFRG 341 >gi|315122411|ref|YP_004062900.1| S-adenosyl-methyltransferase MraW [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495813|gb|ADR52412.1| S-adenosyl-methyltransferase MraW [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 348 Score = 544 bits (1401), Expect = e-153, Method: Compositional matrix adjust. Identities = 264/342 (77%), Positives = 298/342 (87%), Gaps = 1/342 (0%) Query: 1 MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN 60 M+S+ K SS I T H+PVLLE+VIALL P+PGK+I+DATFGAGGYS SFC+MGS+ Sbjct: 1 MKSRYLKETSSPIDSTTNGHIPVLLEEVIALLKPSPGKIIVDATFGAGGYSHSFCQMGSS 60 Query: 61 VIALDRDPFAVSCGQETMRDY-KEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQID 119 VIALDRDP AV+ GQE M+DY K++ SLF+ATFS+L+DYVPD GVDG+VFDLGVSSMQID Sbjct: 61 VIALDRDPLAVAAGQEIMKDYIKKKISLFEATFSRLKDYVPDNGVDGIVFDLGVSSMQID 120 Query: 120 CGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 CGDRGFSFQK GPLDMRMSCSG+SASDVVN A+VKDL RILGILGEEKQASRIAHAIVKR Sbjct: 121 CGDRGFSFQKHGPLDMRMSCSGVSASDVVNHADVKDLIRILGILGEEKQASRIAHAIVKR 180 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 R+ PFQTT+DLSSLIQ TVY NNRIHPATRSFQALRIFVN+EI EL +GL SAEKAL Sbjct: 181 RKHLPFQTTEDLSSLIQNTVYIRNNNRIHPATRSFQALRIFVNDEIRELEKGLLSAEKAL 240 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 K GG+LIVVSFHSLEDRLVKKFFASRSGKV AVRHMIPS+ HPAVFQS+TKKVV+PTQ D Sbjct: 241 KDGGVLIVVSFHSLEDRLVKKFFASRSGKVTAVRHMIPSHIHPAVFQSLTKKVVIPTQSD 300 Query: 300 VAFNRRSRSAKLRAGMRTVERSIEDDSFVHLPRLPTLSQFRG 341 +A NRR+RSAKLR G+RT + ++D SF +L LP LSQFRG Sbjct: 301 IAKNRRARSAKLRVGIRTSAQPMKDLSFEYLAHLPALSQFRG 342 >gi|159185048|ref|NP_355067.2| S-adenosyl-methyltransferase MraW [Agrobacterium tumefaciens str. C58] gi|20138929|sp|P58745|RSMH_AGRT5 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|159140322|gb|AAK87852.2| S-adenosyl methionine-dependent methytransferase [Agrobacterium tumefaciens str. C58] Length = 341 Score = 365 bits (938), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 180/323 (55%), Positives = 232/323 (71%), Gaps = 1/323 (0%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+PVLL +VIA L PAPGK+ILD TFGAGGY+++ G+NVIALDRDP A++ G+ + Sbjct: 19 HIPVLLREVIAALEPAPGKIILDGTFGAGGYTQAILDQGANVIALDRDPTAIAGGEAMVV 78 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 + SL Q+ FS L + P+ G+DGVV D+GVSSMQID +RGFSFQK+GPLDMRMS Sbjct: 79 ANGGRLSLIQSQFSDLAKHAPEDGLDGVVLDIGVSSMQIDEAERGFSFQKNGPLDMRMSA 138 Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199 SG+SA+DVVN+A V DL RI G LGEEKQ RIA AI K+R PF+TT+DL+ LI+ Sbjct: 139 SGVSAADVVNRAKVGDLIRIFGFLGEEKQPGRIARAIEKKRAEEPFRTTRDLAGLIEIVT 198 Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259 ++IHPATR FQALR+FVN+E+ ELAQ L +AE++LK GG L+VV+FHSLEDR+VK Sbjct: 199 PRKAKDKIHPATRVFQALRVFVNDELGELAQALFAAERSLKPGGRLVVVTFHSLEDRIVK 258 Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319 KFF+ RSGK RH+ PA+F++I K ++ + E+ N R+RSAKLRAG+RT Sbjct: 259 KFFSDRSGKAAGSRHLPMVEDKPAIFENIGKPMIAASDEEAELNPRARSAKLRAGLRTTA 318 Query: 320 RSIEDD-SFVHLPRLPTLSQFRG 341 + D S LP L +L + G Sbjct: 319 PARAADFSIFELPDLASLEKMGG 341 >gi|325293473|ref|YP_004279337.1| S-adenosyl-methyltransferase MraW [Agrobacterium sp. H13-3] gi|325061326|gb|ADY65017.1| S-adenosyl-methyltransferase MraW [Agrobacterium sp. H13-3] Length = 341 Score = 365 bits (937), Expect = 5e-99, Method: Compositional matrix adjust. Identities = 183/323 (56%), Positives = 231/323 (71%), Gaps = 1/323 (0%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+PVLL +VIA L PA GKVILD TFGAGGY+++ G+NVIALDRDP A++ GQ + Sbjct: 19 HIPVLLREVIAALEPASGKVILDGTFGAGGYTQAILDQGANVIALDRDPNAIAGGQAMVA 78 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 + +L Q+ FS L + P+ G+DGVV D+GVSSMQID +RGFSFQK+GPLDMRMS Sbjct: 79 ANGGRLTLIQSQFSDLARHAPEGGLDGVVLDIGVSSMQIDEAERGFSFQKNGPLDMRMSS 138 Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199 SG+SA+DVVN+A V DL RI G LGEEKQ RIA AI KRR PF+TT+DL+ LI+ Sbjct: 139 SGVSAADVVNRAKVGDLIRIFGFLGEEKQPGRIARAIEKRRAEEPFRTTRDLAGLIEIVT 198 Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259 ++IHPATR FQALR+FVN+E+ ELAQ L +AE+ALK GG L+VV+FHSLEDR+VK Sbjct: 199 PRKAKDKIHPATRVFQALRVFVNDELGELAQALFAAERALKPGGRLVVVTFHSLEDRIVK 258 Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319 KFF+ RSGK RH+ PA+F++I K +V + E+ N R+RSAKLRAG+RT Sbjct: 259 KFFSERSGKAAGSRHLPMVEDKPAIFENIGKPMVAASDEEAEINPRARSAKLRAGLRTAA 318 Query: 320 RSIEDD-SFVHLPRLPTLSQFRG 341 + D S LP L +L + G Sbjct: 319 PARAADFSIFELPDLASLEKMGG 341 >gi|227822659|ref|YP_002826631.1| S-adenosyl-methyltransferase MraW [Sinorhizobium fredii NGR234] gi|262825425|sp|C3MEN7|RSMH_RHISN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|227341660|gb|ACP25878.1| S-adenosyl-methyltransferase MraW [Sinorhizobium fredii NGR234] Length = 341 Score = 363 bits (931), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 179/323 (55%), Positives = 233/323 (72%), Gaps = 1/323 (0%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+PV+L +V+A L PAPGKVILD TFGAGGY+ + G++VIALDRDP A++ GQ + Sbjct: 19 HIPVMLAEVLAALEPAPGKVILDGTFGAGGYTSAILDAGADVIALDRDPTAIAAGQPMVA 78 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 + L + FS+L D+VP+ G+DG+VFD+GVSSMQID +RGFSFQK GPLDMRMS Sbjct: 79 AAGGRLRLIHSRFSELADHVPEGGLDGIVFDIGVSSMQIDEAERGFSFQKKGPLDMRMSA 138 Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199 +G+SA+DVVN+A V DL RI G LGEEKQA RIA AI KRR APF+TT++L++LI+ Sbjct: 139 AGVSAADVVNRAKVSDLIRIFGFLGEEKQAGRIARAIEKRRAEAPFETTRNLANLIETVT 198 Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259 ++IHPATR FQALRIFVN+E+ ELA L +AE+ LK GG L+VV+FHSLEDR+VK Sbjct: 199 PRKAKDKIHPATRVFQALRIFVNDELGELANALFAAERVLKPGGRLVVVTFHSLEDRIVK 258 Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319 FF RSGK RH+ A A F + K +V ++++ + N R+RSAKLRAG+RT Sbjct: 259 TFFQDRSGKAGGSRHLPLVTARDATFTPVGKPMVAASEDEASRNPRARSAKLRAGVRTPA 318 Query: 320 RSIEDD-SFVHLPRLPTLSQFRG 341 S +D S +LP L +L++ G Sbjct: 319 ASPGNDLSIFNLPELASLARLGG 341 >gi|15965937|ref|NP_386290.1| S-adenosyl-methyltransferase MraW [Sinorhizobium meliloti 1021] gi|307308247|ref|ZP_07587956.1| S-adenosyl-methyltransferase MraW [Sinorhizobium meliloti BL225C] gi|307319714|ref|ZP_07599139.1| S-adenosyl-methyltransferase MraW [Sinorhizobium meliloti AK83] gi|20139051|sp|Q92NL4|RSMH_RHIME RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|15075206|emb|CAC46763.1| Probable SAM-dependent methytransferase [Sinorhizobium meliloti 1021] gi|306894645|gb|EFN25406.1| S-adenosyl-methyltransferase MraW [Sinorhizobium meliloti AK83] gi|306901245|gb|EFN31851.1| S-adenosyl-methyltransferase MraW [Sinorhizobium meliloti BL225C] Length = 341 Score = 362 bits (929), Expect = 5e-98, Method: Compositional matrix adjust. Identities = 179/323 (55%), Positives = 231/323 (71%), Gaps = 1/323 (0%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+PVLL++V+A L+PAPGK+ILD TFGAGGY+ + G++V+ALDRDP A++ GQ M Sbjct: 19 HIPVLLKEVLAALDPAPGKIILDGTFGAGGYASAILDAGADVVALDRDPTAIAAGQSMMH 78 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 + L + FS L ++ P +G+DGVV D+GVSSMQID +RGFSFQK GPLDMRMS Sbjct: 79 ASGGRLKLVHSRFSDLAEHAPAQGLDGVVLDIGVSSMQIDEAERGFSFQKKGPLDMRMSA 138 Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199 +G+SA+DVVN+A V DL RI G LGEEKQA RIA AI KRR PF+TT+DL++LI+ Sbjct: 139 AGVSAADVVNRAKVSDLIRIFGFLGEEKQAGRIARAIEKRRAETPFETTRDLANLIETVT 198 Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259 ++IHPATR FQALRIFVN+E+ ELA L +AE+ALK GG L+VV+FHSLEDR+VK Sbjct: 199 PRKAKDKIHPATRVFQALRIFVNDELGELAHALFAAERALKPGGRLVVVTFHSLEDRIVK 258 Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319 FF RSGK RH+ A A F + K +V ++E+ + N R+RSAKLRAG+RT Sbjct: 259 TFFQDRSGKAGGSRHLPLVTARAATFTPVGKPMVAASEEEASRNPRARSAKLRAGVRTEA 318 Query: 320 RSIEDD-SFVHLPRLPTLSQFRG 341 S D S +LP L +L++ G Sbjct: 319 PSPGADLSIFNLPELASLARLGG 341 >gi|222086453|ref|YP_002544986.1| S-adenosyl-methyltransferase protein [Agrobacterium radiobacter K84] gi|263446643|sp|B9JH59|RSMH_AGRRK RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|221723901|gb|ACM27057.1| S-adenosyl-methyltransferase protein [Agrobacterium radiobacter K84] Length = 341 Score = 361 bits (926), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 180/323 (55%), Positives = 229/323 (70%), Gaps = 1/323 (0%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+PVLL++V+ L PAPGK+ILD TFGAGGY+ + G+++IALDRDP A++ GQ + Sbjct: 19 HIPVLLKEVLEALAPAPGKLILDGTFGAGGYTSAILAAGADMIALDRDPTAIAAGQSMVA 78 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 + + +L Q+ FSQL D+ P G+DGVV D+GVSSMQ+D +RGFSF K+GPLDMRMS Sbjct: 79 AHAGRLTLIQSQFSQLADHAPQGGLDGVVLDIGVSSMQLDEAERGFSFSKNGPLDMRMSA 138 Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199 SG+SA+DVVN A + DL RI LGEEKQA RIAHAI KRR APF TT+DL+ LI+ Sbjct: 139 SGVSAADVVNHAKLADLIRIFVFLGEEKQAPRIAHAIEKRRAEAPFVTTRDLAGLIEIVT 198 Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259 ++IHPATR FQALRIFVN+E+ ELAQ L +AE+ALK GG L+VV+FHSLEDR+VK Sbjct: 199 PRKAKDKIHPATRVFQALRIFVNDELGELAQALFAAERALKPGGRLVVVTFHSLEDRIVK 258 Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT-V 318 KFFA RSG+ RHM + A F I K ++ + + N R+RSAKLRAG+RT V Sbjct: 259 KFFADRSGRAGGSRHMPMVHERLATFDPIGKPMISASDAEAEINPRARSAKLRAGLRTSV 318 Query: 319 ERSIEDDSFVHLPRLPTLSQFRG 341 + D S LP L +L + G Sbjct: 319 QAEAADLSIFDLPNLASLGKLGG 341 >gi|86358458|ref|YP_470350.1| S-adenosyl-methyltransferase MraW [Rhizobium etli CFN 42] gi|123511371|sp|Q2K6B3|RSMH_RHIEC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|86282560|gb|ABC91623.1| S-adenosyl-methyltransferase protein [Rhizobium etli CFN 42] Length = 341 Score = 359 bits (921), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 178/323 (55%), Positives = 227/323 (70%), Gaps = 1/323 (0%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+PVLL +V+A L+PAPGK+ILD TFGAGGYS + G+ VIALDRDP A++ GQ + Sbjct: 19 HIPVLLNEVLAALSPAPGKLILDGTFGAGGYSAAILAAGAEVIALDRDPSAIAAGQAMVA 78 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 + + L A FS L D+ P G+DGVV D+GVSSMQID +RGFSFQKSGPLDMRMS Sbjct: 79 AHAGRLRLIHAQFSNLGDHAPQGGLDGVVLDIGVSSMQIDEPERGFSFQKSGPLDMRMSA 138 Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199 +G+SA+DVVN+A V DL RI LGEE QA RIAHAI KRR+ PF+TT+DL+ LI+ Sbjct: 139 TGVSAADVVNRAKVADLIRIFHFLGEENQAPRIAHAIEKRREEKPFETTRDLAGLIELVT 198 Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259 ++IHPATR FQALRIFVN+E+ ELAQ L +AE+ LK GG L+VV+FHSLEDR+VK Sbjct: 199 PRKMKDKIHPATRVFQALRIFVNDELGELAQALFAAERTLKPGGRLVVVTFHSLEDRIVK 258 Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT-V 318 KFF+ R+G+ RH+ ++ A F +I K +V ++ + N R+RSAKLRAG+RT Sbjct: 259 KFFSDRAGRATGSRHLPAAHERAATFTAIGKPMVSASEAEAEANPRARSAKLRAGLRTDA 318 Query: 319 ERSIEDDSFVHLPRLPTLSQFRG 341 D S P L +L + G Sbjct: 319 AAEAADMSLFGFPNLASLGKLGG 341 >gi|116253056|ref|YP_768894.1| S-adenosyl-methyltransferase MraW [Rhizobium leguminosarum bv. viciae 3841] gi|262825308|sp|Q1ME25|RSMH_RHIL3 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|115257704|emb|CAK08802.1| putative S-adenosyl-methyltransferase [Rhizobium leguminosarum bv. viciae 3841] Length = 341 Score = 356 bits (914), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 177/323 (54%), Positives = 226/323 (69%), Gaps = 1/323 (0%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+PVLL++V+A L PAPGK ILD TFGAGGYS + G+ VIALDRDP A++ GQ + Sbjct: 19 HIPVLLDEVLAALAPAPGKFILDGTFGAGGYSSAILAAGAEVIALDRDPTAIAAGQAMVA 78 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 + + L + FS L D+ P G+DGVV D+GVSSMQID +RGFSFQK+GPLDMRMS Sbjct: 79 AHGGRLRLVHSQFSHLADHAPQGGLDGVVLDIGVSSMQIDEAERGFSFQKNGPLDMRMSA 138 Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199 G+SA+DVVN+A V DL RI LGEE QA RIAHAI KRR PF+TT+DL+ LI+ Sbjct: 139 EGVSAADVVNRAKVADLIRIFHFLGEESQAPRIAHAIEKRRAEKPFETTRDLAGLIELVT 198 Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259 ++IHPATR FQALRIFVN+E+ ELAQ L +AE ALK GG L+VV+FHSLEDR+VK Sbjct: 199 PRKMKDKIHPATRVFQALRIFVNDELGELAQALFAAETALKPGGRLVVVTFHSLEDRIVK 258 Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319 KFF+ R+GK RH+ ++ A F+++ K +V ++ + N R+RSAKLRAG+RT Sbjct: 259 KFFSDRAGKASGSRHLPVAHERAATFEAVGKPMVSASEAEAEINPRARSAKLRAGLRTYA 318 Query: 320 RS-IEDDSFVHLPRLPTLSQFRG 341 + D S P L +L + G Sbjct: 319 AAEAADMSLFGFPNLASLGKLGG 341 >gi|222149144|ref|YP_002550101.1| S-adenosyl-methyltransferase MraW [Agrobacterium vitis S4] gi|263446656|sp|B9JY62|RSMH_AGRVS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|221736130|gb|ACM37093.1| S-adenosyl-methyltransferase MraW [Agrobacterium vitis S4] Length = 341 Score = 356 bits (913), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 175/321 (54%), Positives = 230/321 (71%), Gaps = 1/321 (0%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+PVLLE VI L P+ GKVILD TFGAGGY+ + G++VIALDRDP A++ GQ + Sbjct: 19 HIPVLLEPVIEALEPSAGKVILDGTFGAGGYTSAILDTGADVIALDRDPNAIAGGQAMVA 78 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 + +L FS L ++ P+ G+DG+V D+GVSSMQID +RGFSFQ++GPLDMRMS Sbjct: 79 ARAGRLTLHHTRFSTLDNFAPEGGLDGIVLDIGVSSMQIDEAERGFSFQRNGPLDMRMSG 138 Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199 +G+SA+DVVN+A V DL RI G LGEEKQ+ RIA AI KRR + PFQTT+DL+ +I+ Sbjct: 139 TGVSAADVVNRAKVGDLIRIFGFLGEEKQSGRIARAIEKRRVNHPFQTTRDLAGMIEIVT 198 Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259 ++IHPATR FQALR+FVN+E+ ELA+ L +AE+ALK GG L+VV+FHSLEDR+VK Sbjct: 199 PRKAKDKIHPATRVFQALRVFVNDELGELAEALFAAERALKPGGRLVVVTFHSLEDRIVK 258 Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319 KFF+ RSGK RHM + PA F+ + K +V T+E+ N R+RSAKLRAG+RT Sbjct: 259 KFFSDRSGKAAGSRHMPMAFERPATFEPVGKGMVTATEEEAEINPRARSAKLRAGIRTAH 318 Query: 320 RSIEDD-SFVHLPRLPTLSQF 339 +++ D S LP L + + Sbjct: 319 PAMKADFSIFDLPDLAEIERL 339 >gi|190892591|ref|YP_001979133.1| S-adenosyl-methyltransferase [Rhizobium etli CIAT 652] gi|262825238|sp|B3PTW8|RSMH_RHIE6 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|190697870|gb|ACE91955.1| S-adenosyl-methyltransferase protein [Rhizobium etli CIAT 652] Length = 341 Score = 353 bits (906), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 174/323 (53%), Positives = 225/323 (69%), Gaps = 1/323 (0%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+PVLLE+V+A L PAPGK+ILD TFGAGGY+ + G+ VIALDRDP A++ GQ + Sbjct: 19 HIPVLLEEVLAALAPAPGKLILDGTFGAGGYTSAILAAGAEVIALDRDPTAIAAGQAMVA 78 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 + + L + FS L D+ P G+DGVV D+GVSSMQ+D +RGFSFQK+GPLDMRMS Sbjct: 79 AHGGRLKLVHSQFSHLADHAPQGGLDGVVLDIGVSSMQLDEAERGFSFQKNGPLDMRMSA 138 Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199 +G+SA+DV+N+A V DL RI LGEE QA RIAHAI KRR PF+TT+DL+ LI+ Sbjct: 139 TGVSAADVLNRAKVADLIRIFHFLGEESQAPRIAHAIEKRRAEKPFETTRDLAGLIELVT 198 Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259 ++IHPATR FQALRIFVN+E+ ELAQ L +AE LK GG L+VV+FHSLEDR+VK Sbjct: 199 PRKMKDKIHPATRVFQALRIFVNDELGELAQALFAAETVLKPGGRLVVVTFHSLEDRIVK 258 Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319 KFF+ R+GK RH+ ++ A F ++ K +V ++ + N R+RSAKLRAG RT Sbjct: 259 KFFSDRAGKASGSRHLPAAHERAATFTAVGKSMVSASEAEAESNPRARSAKLRAGQRTAA 318 Query: 320 RSIEDD-SFVHLPRLPTLSQFRG 341 + D S P L +L + G Sbjct: 319 AAEAADMSLFGFPNLASLGKLGG 341 >gi|262831477|sp|A6UB93|RSMH_SINMW RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 341 Score = 344 bits (882), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 183/323 (56%), Positives = 229/323 (70%), Gaps = 1/323 (0%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+PVLLE+V+A L PAPGKVILD TFGAGGY+ + G+ VIALDRDP A++ GQ + Sbjct: 19 HIPVLLEEVLAALEPAPGKVILDGTFGAGGYASAILDAGAEVIALDRDPTAIAAGQSMVS 78 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 + SL + FS L ++ P +G+DGVV D+GVSSMQID +RGFSFQK GPLDMRMS Sbjct: 79 ASGGRLSLIHSRFSGLAEHAPAEGLDGVVLDVGVSSMQIDEAERGFSFQKKGPLDMRMSA 138 Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199 +G+SA+DVVN+A V DL RI G LGEEKQA RIA I KRR APF+TT+DL++LI+ Sbjct: 139 AGVSAADVVNRAKVSDLIRIFGFLGEEKQAGRIARTIEKRRAEAPFETTRDLANLIETVT 198 Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259 ++IHPATR FQALRIFVN+E+ ELA L +AE+ALK GG L+VVSFHSLEDR+VK Sbjct: 199 PRKAKDKIHPATRVFQALRIFVNDELGELAAALFAAERALKPGGRLVVVSFHSLEDRIVK 258 Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319 FF RSGK RH+ A A F + K +V + E+ + N R+RSAKLRAG+RT Sbjct: 259 TFFQDRSGKAGGSRHLPLVTARAATFAPVGKPMVSASDEEASRNPRARSAKLRAGIRTAA 318 Query: 320 RSIEDD-SFVHLPRLPTLSQFRG 341 S D S +LP L +L++ G Sbjct: 319 PSPGADLSIFNLPELASLARLGG 341 >gi|150397291|ref|YP_001327758.1| S-adenosyl-methyltransferase MraW [Sinorhizobium medicae WSM419] gi|150028806|gb|ABR60923.1| S-adenosyl-methyltransferase MraW [Sinorhizobium medicae WSM419] Length = 362 Score = 343 bits (881), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 183/323 (56%), Positives = 229/323 (70%), Gaps = 1/323 (0%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+PVLLE+V+A L PAPGKVILD TFGAGGY+ + G+ VIALDRDP A++ GQ + Sbjct: 40 HIPVLLEEVLAALEPAPGKVILDGTFGAGGYASAILDAGAEVIALDRDPTAIAAGQSMVS 99 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 + SL + FS L ++ P +G+DGVV D+GVSSMQID +RGFSFQK GPLDMRMS Sbjct: 100 ASGGRLSLIHSRFSGLAEHAPAEGLDGVVLDVGVSSMQIDEAERGFSFQKKGPLDMRMSA 159 Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199 +G+SA+DVVN+A V DL RI G LGEEKQA RIA I KRR APF+TT+DL++LI+ Sbjct: 160 AGVSAADVVNRAKVSDLIRIFGFLGEEKQAGRIARTIEKRRAEAPFETTRDLANLIETVT 219 Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259 ++IHPATR FQALRIFVN+E+ ELA L +AE+ALK GG L+VVSFHSLEDR+VK Sbjct: 220 PRKAKDKIHPATRVFQALRIFVNDELGELAAALFAAERALKPGGRLVVVSFHSLEDRIVK 279 Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319 FF RSGK RH+ A A F + K +V + E+ + N R+RSAKLRAG+RT Sbjct: 280 TFFQDRSGKAGGSRHLPLVTARAATFAPVGKPMVSASDEEASRNPRARSAKLRAGIRTAA 339 Query: 320 RSIEDD-SFVHLPRLPTLSQFRG 341 S D S +LP L +L++ G Sbjct: 340 PSPGADLSIFNLPELASLARLGG 362 >gi|209550182|ref|YP_002282099.1| S-adenosyl-methyltransferase MraW [Rhizobium leguminosarum bv. trifolii WSM2304] gi|262825400|sp|B5ZWK2|RSMH_RHILW RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|209535938|gb|ACI55873.1| S-adenosyl-methyltransferase MraW [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 341 Score = 341 bits (874), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 179/324 (55%), Positives = 230/324 (70%), Gaps = 3/324 (0%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+PVLL++V++ L PAPGK+ILD TFGAGGYS + G+ VIALDRDP A++ GQ + Sbjct: 19 HIPVLLDEVLSALAPAPGKLILDGTFGAGGYSSAILAAGAEVIALDRDPTAIASGQAMVA 78 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 + + L + FS L D+ P G+DGVV D+GVSSMQID +RGFSFQK+GPLDMRMS Sbjct: 79 AHGGRLKLVHSQFSHLADHAPQGGLDGVVLDIGVSSMQIDEAERGFSFQKNGPLDMRMSA 138 Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199 +G+SA+DVVN+A V DL RI LGEE QA RIAHAI KRR+ PF+TT+DL+ LI+ Sbjct: 139 AGVSAADVVNRAKVADLIRIFHFLGEESQAPRIAHAIEKRREEKPFETTRDLAGLIELVT 198 Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259 ++IHPATR FQALRIFVN+E+ ELAQ L +AE ALK GG L+VV+FHSLEDR+VK Sbjct: 199 PRKMKDKIHPATRVFQALRIFVNDELGELAQALFAAEAALKPGGRLVVVTFHSLEDRIVK 258 Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319 KFF+ R+GK RH+ ++ A F +I K +V ++ + N R+RSAKLRAG+RT E Sbjct: 259 KFFSDRAGKASGSRHLPVAHERAATFAAIGKPMVSASEAEAEINPRARSAKLRAGLRT-E 317 Query: 320 RSIE--DDSFVHLPRLPTLSQFRG 341 + E D S P L +L + G Sbjct: 318 AAAEAADMSLFGFPNLASLGKLGG 341 >gi|163843695|ref|YP_001628099.1| S-adenosyl-methyltransferase MraW [Brucella suis ATCC 23445] gi|263446883|sp|B0CHM8|RSMH_BRUSI RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|163674418|gb|ABY38529.1| S-adenosyl-methyltransferase MraW [Brucella suis ATCC 23445] Length = 346 Score = 328 bits (842), Expect = 5e-88, Method: Compositional matrix adjust. Identities = 168/326 (51%), Positives = 218/326 (66%), Gaps = 6/326 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 HVPVL+ +VI L PAPG VI+D TFGAGGY+R + G++VIA+DRDP A+ G+ + Sbjct: 18 HVPVLIAEVIDALKPAPGAVIVDGTFGAGGYTRRILETGADVIAIDRDPTAIEAGRAMEK 77 Query: 80 DYKEQFSLFQATFSQLQDYVP-----DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++ + +L ++ FS L + V K VDGVV D+GVSSMQID +RGFSFQK GPLD Sbjct: 78 EFPGRLNLVESRFSALDEAVARMSGAGKKVDGVVLDIGVSSMQIDEAERGFSFQKDGPLD 137 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRMS G SA+D VN+ DL RI LGEE+ A RIA I KRR + PF T DL++ Sbjct: 138 MRMSSGGPSAADAVNRLKTGDLARIFNFLGEERHAGRIARMIEKRRAAKPFTRTLDLANA 197 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 I+ V + +RIHPATR FQALR++VN+E+ ELA+ L +AE+ LK GG L+VV+FHSLE Sbjct: 198 IETLVGRNPKDRIHPATRVFQALRVYVNDELGELARALLAAERILKPGGRLVVVTFHSLE 257 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 DR+VK+FFA R+G RHM ++ F K V PT E+ N R+RSAKLRAG Sbjct: 258 DRMVKRFFADRAGGSAGSRHMPETHMRLPSFTPAVKGAVGPTPEEEERNPRARSAKLRAG 317 Query: 315 MRTVERSIEDD-SFVHLPRLPTLSQF 339 +RT +EDD S LP+LP ++ Sbjct: 318 IRTENPPLEDDLSLFGLPKLPETNEL 343 >gi|148559451|ref|YP_001259332.1| S-adenosyl-methyltransferase MraW [Brucella ovis ATCC 25840] gi|263446879|sp|A5VRI5|RSMH_BRUO2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|148370708|gb|ABQ60687.1| S-adenosyl-methyltransferase MraW [Brucella ovis ATCC 25840] Length = 346 Score = 328 bits (841), Expect = 7e-88, Method: Compositional matrix adjust. Identities = 168/326 (51%), Positives = 218/326 (66%), Gaps = 6/326 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 HVPVL+ +VI L PAPG VI+D TFGAGGY+R + G++VIA+DRDP A+ G+ + Sbjct: 18 HVPVLIAEVIDALKPAPGAVIVDGTFGAGGYTRRILETGADVIAIDRDPTAIEAGRAMEK 77 Query: 80 DYKEQFSLFQATFSQLQDYVP-----DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++ + +L ++ FS L + V K VDGVV D+GVSSMQID +RGFSFQK GPLD Sbjct: 78 EFPGRLNLVESRFSALDEAVARMSGAGKKVDGVVLDIGVSSMQIDEAERGFSFQKDGPLD 137 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRMS G SA+D VN+ DL RI LGEE+ A RIA I KRR + PF T DL++ Sbjct: 138 MRMSSRGSSAADAVNRLKTGDLARIFNFLGEERHAGRIARMIEKRRAAKPFTRTLDLANA 197 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 I+ V + +RIHPATR FQALR++VN+E+ ELA+ L +AE+ LK GG L+VV+FHSLE Sbjct: 198 IETLVGRNPKDRIHPATRVFQALRVYVNDELGELARALLAAERILKPGGRLVVVTFHSLE 257 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 DR+VK+FFA R+G RHM ++ F K V PT E+ N R+RSAKLRAG Sbjct: 258 DRMVKRFFADRAGGSAGSRHMPETHMRLPSFTPAVKGAVGPTPEEEERNPRARSAKLRAG 317 Query: 315 MRTVERSIEDD-SFVHLPRLPTLSQF 339 +RT +EDD S LP+LP ++ Sbjct: 318 IRTENSPLEDDLSLFGLPKLPETNEL 343 >gi|254714473|ref|ZP_05176284.1| S-adenosyl-methyltransferase MraW [Brucella ceti M644/93/1] gi|254717371|ref|ZP_05179182.1| S-adenosyl-methyltransferase MraW [Brucella ceti M13/05/1] gi|261219203|ref|ZP_05933484.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella ceti M13/05/1] gi|261322263|ref|ZP_05961460.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella ceti M644/93/1] gi|260924292|gb|EEX90860.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella ceti M13/05/1] gi|261294953|gb|EEX98449.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella ceti M644/93/1] Length = 346 Score = 328 bits (841), Expect = 7e-88, Method: Compositional matrix adjust. Identities = 168/326 (51%), Positives = 218/326 (66%), Gaps = 6/326 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 HVPVL+ +VI L PAPG VI+D TFGAGGY+R + G++VIA+DRDP A+ G+ + Sbjct: 18 HVPVLIAEVIDALKPAPGAVIVDGTFGAGGYTRRILETGADVIAIDRDPTAIEAGRAMEK 77 Query: 80 DYKEQFSLFQATFSQLQDYVP-----DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++ + +L ++ FS L + V K VDGVV D+GVSSMQID +RGFSFQK GPLD Sbjct: 78 EFPGRLNLVESRFSALDEAVARMSGAGKKVDGVVLDIGVSSMQIDEAERGFSFQKDGPLD 137 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRMS G SA+D VN+ DL RI LGEE+ A RIA I KRR + PF T DL++ Sbjct: 138 MRMSSRGPSAADAVNRLKTGDLARIFNFLGEERHAGRIARMIEKRRAAKPFTRTLDLTNA 197 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 I+ V + +RIHPATR FQALR++VN+E+ ELA+ L +AE+ LK GG L+VV+FHSLE Sbjct: 198 IETLVGRNPKDRIHPATRVFQALRVYVNDELGELARALLAAERILKPGGRLVVVTFHSLE 257 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 DR+VK+FFA R+G RHM ++ F K V PT E+ N R+RSAKLRAG Sbjct: 258 DRMVKRFFADRAGGSAGSRHMPETHMRLPSFTPAVKGAVGPTPEEEERNPRARSAKLRAG 317 Query: 315 MRTVERSIEDD-SFVHLPRLPTLSQF 339 +RT +EDD S LP+LP ++ Sbjct: 318 IRTENPPLEDDLSLFGLPKLPETNEL 343 >gi|17986854|ref|NP_539488.1| S-adenosyl-methyltransferase MraW [Brucella melitensis bv. 1 str. 16M] gi|23502310|ref|NP_698437.1| S-adenosyl-methyltransferase MraW [Brucella suis 1330] gi|62290332|ref|YP_222125.1| S-adenosyl-methyltransferase MraW [Brucella abortus bv. 1 str. 9-941] gi|82700256|ref|YP_414830.1| S-adenosyl-methyltransferase MraW [Brucella melitensis biovar Abortus 2308] gi|161619387|ref|YP_001593274.1| S-adenosyl-methyltransferase MraW [Brucella canis ATCC 23365] gi|189024565|ref|YP_001935333.1| S-adenosyl-methyltransferase MraW [Brucella abortus S19] gi|225852921|ref|YP_002733154.1| S-adenosyl-methyltransferase MraW [Brucella melitensis ATCC 23457] gi|254694123|ref|ZP_05155951.1| S-adenosyl-methyltransferase MraW [Brucella abortus bv. 3 str. Tulya] gi|254697775|ref|ZP_05159603.1| S-adenosyl-methyltransferase MraW [Brucella abortus bv. 2 str. 86/8/59] gi|254702160|ref|ZP_05163988.1| S-adenosyl-methyltransferase MraW [Brucella suis bv. 5 str. 513] gi|254704697|ref|ZP_05166525.1| S-adenosyl-methyltransferase MraW [Brucella suis bv. 3 str. 686] gi|254708111|ref|ZP_05169939.1| S-adenosyl-methyltransferase MraW [Brucella pinnipedialis M163/99/10] gi|254710480|ref|ZP_05172291.1| S-adenosyl-methyltransferase MraW [Brucella pinnipedialis B2/94] gi|254730664|ref|ZP_05189242.1| S-adenosyl-methyltransferase MraW [Brucella abortus bv. 4 str. 292] gi|256031974|ref|ZP_05445588.1| S-adenosyl-methyltransferase MraW [Brucella pinnipedialis M292/94/1] gi|256045069|ref|ZP_05447970.1| S-adenosyl-methyltransferase MraW [Brucella melitensis bv. 1 str. Rev.1] gi|256160173|ref|ZP_05457867.1| S-adenosyl-methyltransferase MraW [Brucella ceti M490/95/1] gi|256255379|ref|ZP_05460915.1| S-adenosyl-methyltransferase MraW [Brucella ceti B1/94] gi|256263598|ref|ZP_05466130.1| bacterial methyltransferase [Brucella melitensis bv. 2 str. 63/9] gi|256369855|ref|YP_003107366.1| S-adenosyl-methyltransferase [Brucella microti CCM 4915] gi|260169111|ref|ZP_05755922.1| S-adenosyl-methyltransferase MraW [Brucella sp. F5/99] gi|260546874|ref|ZP_05822613.1| bacterial methyltransferase [Brucella abortus NCTC 8038] gi|260565332|ref|ZP_05835816.1| bacterial methyltransferase [Brucella melitensis bv. 1 str. 16M] gi|260566056|ref|ZP_05836526.1| bacterial methyltransferase [Brucella suis bv. 4 str. 40] gi|260758381|ref|ZP_05870729.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella abortus bv. 4 str. 292] gi|260762207|ref|ZP_05874550.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella abortus bv. 2 str. 86/8/59] gi|261214424|ref|ZP_05928705.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella abortus bv. 3 str. Tulya] gi|261222582|ref|ZP_05936863.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella ceti B1/94] gi|261315615|ref|ZP_05954812.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella pinnipedialis M163/99/10] gi|261318052|ref|ZP_05957249.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella pinnipedialis B2/94] gi|261752731|ref|ZP_05996440.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella suis bv. 5 str. 513] gi|261755390|ref|ZP_05999099.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella suis bv. 3 str. 686] gi|261758618|ref|ZP_06002327.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella sp. F5/99] gi|265989084|ref|ZP_06101641.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella pinnipedialis M292/94/1] gi|265991497|ref|ZP_06104054.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella melitensis bv. 1 str. Rev.1] gi|265998547|ref|ZP_06111104.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella ceti M490/95/1] gi|54037823|sp|P65428|RSMH_BRUSU RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|54041486|sp|P65427|RSMH_BRUME RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|68565395|sp|Q57C70|RSMH_BRUAB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|88909188|sp|Q2YM63|RSMH_BRUA2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263445807|sp|A9M698|RSMH_BRUC2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263445814|sp|B2S6R2|RSMH_BRUA1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263447062|sp|C0RE78|RSMH_BRUMB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|17982491|gb|AAL51752.1| sam-dependent methytransferase [Brucella melitensis bv. 1 str. 16M] gi|23348287|gb|AAN30352.1| conserved hypothetical protein TIGR00006 [Brucella suis 1330] gi|62196464|gb|AAX74764.1| conserved hypothetical protein TIGR00006 [Brucella abortus bv. 1 str. 9-941] gi|82616357|emb|CAJ11414.1| Bacterial methyltransferase [Brucella melitensis biovar Abortus 2308] gi|161336198|gb|ABX62503.1| S-adenosyl-methyltransferase MraW [Brucella canis ATCC 23365] gi|189020137|gb|ACD72859.1| Bacterial methyltransferase [Brucella abortus S19] gi|225641286|gb|ACO01200.1| S-adenosyl-methyltransferase MraW [Brucella melitensis ATCC 23457] gi|256000018|gb|ACU48417.1| S-adenosyl-methyltransferase [Brucella microti CCM 4915] gi|260095924|gb|EEW79801.1| bacterial methyltransferase [Brucella abortus NCTC 8038] gi|260151400|gb|EEW86494.1| bacterial methyltransferase [Brucella melitensis bv. 1 str. 16M] gi|260155574|gb|EEW90654.1| bacterial methyltransferase [Brucella suis bv. 4 str. 40] gi|260668699|gb|EEX55639.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella abortus bv. 4 str. 292] gi|260672639|gb|EEX59460.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella abortus bv. 2 str. 86/8/59] gi|260916031|gb|EEX82892.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella abortus bv. 3 str. Tulya] gi|260921166|gb|EEX87819.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella ceti B1/94] gi|261297275|gb|EEY00772.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella pinnipedialis B2/94] gi|261304641|gb|EEY08138.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella pinnipedialis M163/99/10] gi|261738602|gb|EEY26598.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella sp. F5/99] gi|261742484|gb|EEY30410.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella suis bv. 5 str. 513] gi|261745143|gb|EEY33069.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella suis bv. 3 str. 686] gi|262553171|gb|EEZ09005.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella ceti M490/95/1] gi|263002281|gb|EEZ14856.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella melitensis bv. 1 str. Rev.1] gi|263093648|gb|EEZ17653.1| bacterial methyltransferase [Brucella melitensis bv. 2 str. 63/9] gi|264661281|gb|EEZ31542.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella pinnipedialis M292/94/1] Length = 346 Score = 328 bits (841), Expect = 7e-88, Method: Compositional matrix adjust. Identities = 168/326 (51%), Positives = 218/326 (66%), Gaps = 6/326 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 HVPVL+ +VI L PAPG VI+D TFGAGGY+R + G++VIA+DRDP A+ G+ + Sbjct: 18 HVPVLIAEVIDALKPAPGAVIVDGTFGAGGYTRRILETGADVIAIDRDPTAIEAGRAMEK 77 Query: 80 DYKEQFSLFQATFSQLQDYVP-----DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++ + +L ++ FS L + V K VDGVV D+GVSSMQID +RGFSFQK GPLD Sbjct: 78 EFPGRLNLVESRFSALDEAVARMSGAGKKVDGVVLDIGVSSMQIDEAERGFSFQKDGPLD 137 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRMS G SA+D VN+ DL RI LGEE+ A RIA I KRR + PF T DL++ Sbjct: 138 MRMSSRGPSAADAVNRLKTGDLARIFNFLGEERHAGRIARMIEKRRAAKPFTRTLDLANA 197 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 I+ V + +RIHPATR FQALR++VN+E+ ELA+ L +AE+ LK GG L+VV+FHSLE Sbjct: 198 IETLVGRNPKDRIHPATRVFQALRVYVNDELGELARALLAAERILKPGGRLVVVTFHSLE 257 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 DR+VK+FFA R+G RHM ++ F K V PT E+ N R+RSAKLRAG Sbjct: 258 DRMVKRFFADRAGGSAGSRHMPETHMRLPSFTPAVKGAVGPTPEEEERNPRARSAKLRAG 317 Query: 315 MRTVERSIEDD-SFVHLPRLPTLSQF 339 +RT +EDD S LP+LP ++ Sbjct: 318 IRTENPPLEDDLSLFGLPKLPETNEL 343 >gi|256113992|ref|ZP_05454775.1| S-adenosyl-methyltransferase MraW [Brucella melitensis bv. 3 str. Ether] gi|265995335|ref|ZP_06107892.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella melitensis bv. 3 str. Ether] gi|262766448|gb|EEZ12237.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella melitensis bv. 3 str. Ether] Length = 346 Score = 328 bits (841), Expect = 7e-88, Method: Compositional matrix adjust. Identities = 168/326 (51%), Positives = 218/326 (66%), Gaps = 6/326 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 HVPVL+ +VI L PAPG VI+D TFGAGGY+R + G++VIA+DRDP A+ G+ + Sbjct: 18 HVPVLIAEVIDALKPAPGAVIVDGTFGAGGYTRRILETGADVIAIDRDPTAIEAGRAMEK 77 Query: 80 DYKEQFSLFQATFSQLQDYVP-----DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++ + +L ++ FS L + V K VDGVV D+GVSSMQID +RGFSFQK GPLD Sbjct: 78 EFPGRLNLVESRFSALDEAVARMSGAGKKVDGVVLDIGVSSMQIDEAERGFSFQKDGPLD 137 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRMS G SA+D VN+ DL RI LGEE+ A RIA I KRR + PF T DL++ Sbjct: 138 MRMSSRGPSAADAVNRLKTGDLARIFNFLGEERHAGRIARMIEKRRAAKPFTRTLDLANA 197 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 I+ V + +RIHPATR FQALR++VN+E+ ELA+ L +AE+ LK GG L+VV+FHSLE Sbjct: 198 IETLVGRNPKDRIHPATRVFQALRVYVNDELGELARALLAAERILKPGGRLVVVTFHSLE 257 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 DR+VK+FFA R+G RHM ++ F K V PT E+ N R+RSAKLRAG Sbjct: 258 DRMVKRFFADRAGGSAGSRHMPETHMRLPSFTPAVKGAVGPTPEEEERNPRARSAKLRAG 317 Query: 315 MRTVERSIEDD-SFVHLPRLPTLSQF 339 +RT +EDD S LP+LP ++ Sbjct: 318 IRTENAPLEDDLSLFGLPKLPETNEL 343 >gi|237815839|ref|ZP_04594836.1| S-adenosyl-methyltransferase MraW [Brucella abortus str. 2308 A] gi|237789137|gb|EEP63348.1| S-adenosyl-methyltransferase MraW [Brucella abortus str. 2308 A] gi|326409463|gb|ADZ66528.1| Bacterial methyltransferase [Brucella melitensis M28] gi|326539169|gb|ADZ87384.1| S-adenosyl-methyltransferase MraW [Brucella melitensis M5-90] Length = 347 Score = 328 bits (841), Expect = 7e-88, Method: Compositional matrix adjust. Identities = 168/326 (51%), Positives = 218/326 (66%), Gaps = 6/326 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 HVPVL+ +VI L PAPG VI+D TFGAGGY+R + G++VIA+DRDP A+ G+ + Sbjct: 19 HVPVLIAEVIDALKPAPGAVIVDGTFGAGGYTRRILETGADVIAIDRDPTAIEAGRAMEK 78 Query: 80 DYKEQFSLFQATFSQLQDYVP-----DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++ + +L ++ FS L + V K VDGVV D+GVSSMQID +RGFSFQK GPLD Sbjct: 79 EFPGRLNLVESRFSALDEAVARMSGAGKKVDGVVLDIGVSSMQIDEAERGFSFQKDGPLD 138 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRMS G SA+D VN+ DL RI LGEE+ A RIA I KRR + PF T DL++ Sbjct: 139 MRMSSRGPSAADAVNRLKTGDLARIFNFLGEERHAGRIARMIEKRRAAKPFTRTLDLANA 198 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 I+ V + +RIHPATR FQALR++VN+E+ ELA+ L +AE+ LK GG L+VV+FHSLE Sbjct: 199 IETLVGRNPKDRIHPATRVFQALRVYVNDELGELARALLAAERILKPGGRLVVVTFHSLE 258 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 DR+VK+FFA R+G RHM ++ F K V PT E+ N R+RSAKLRAG Sbjct: 259 DRMVKRFFADRAGGSAGSRHMPETHMRLPSFTPAVKGAVGPTPEEEERNPRARSAKLRAG 318 Query: 315 MRTVERSIEDD-SFVHLPRLPTLSQF 339 +RT +EDD S LP+LP ++ Sbjct: 319 IRTENPPLEDDLSLFGLPKLPETNEL 344 >gi|254689633|ref|ZP_05152887.1| S-adenosyl-methyltransferase MraW [Brucella abortus bv. 6 str. 870] gi|256257883|ref|ZP_05463419.1| S-adenosyl-methyltransferase MraW [Brucella abortus bv. 9 str. C68] gi|260755162|ref|ZP_05867510.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella abortus bv. 6 str. 870] gi|260884175|ref|ZP_05895789.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella abortus bv. 9 str. C68] gi|297248720|ref|ZP_06932438.1| methylase MraW [Brucella abortus bv. 5 str. B3196] gi|260675270|gb|EEX62091.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella abortus bv. 6 str. 870] gi|260873703|gb|EEX80772.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella abortus bv. 9 str. C68] gi|297175889|gb|EFH35236.1| methylase MraW [Brucella abortus bv. 5 str. B3196] Length = 346 Score = 327 bits (839), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 168/326 (51%), Positives = 218/326 (66%), Gaps = 6/326 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 HVPVL+ +VI L PAPG VI+D TFGAGGY+R + G++VIA+DRDP A+ G+ + Sbjct: 18 HVPVLIAEVIDALKPAPGAVIVDGTFGAGGYTRRILETGADVIAIDRDPTAIEAGRAMEK 77 Query: 80 DYKEQFSLFQATFSQLQDYVP-----DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++ + +L ++ FS L + V K VDGVV D+GVSSMQID +RGFSFQK GPLD Sbjct: 78 EFPGRLNLVESRFSALDEAVARMSGAGKKVDGVVLDIGVSSMQIDEAERGFSFQKDGPLD 137 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRMS G SA+D VN+ DL RI LGEE+ A RIA I KRR + PF T DL++ Sbjct: 138 MRMSSRGPSAADAVNRLKTGDLARIFNFLGEERHAGRIARMIEKRRAAKPFTRTLDLANA 197 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 I+ V + +RIHPATR FQALR++VN+E+ ELA+ L +AE+ LK GG L+VV+FHSLE Sbjct: 198 IETLVGRNPKDRIHPATRVFQALRVYVNDELGELARALLAAERILKPGGRLVVVTFHSLE 257 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 DR+VK+FFA R+G RHM ++ F K V PT E+ N R+RSAKLRAG Sbjct: 258 DRMVKRFFADRAGGSAGSRHMPETHMRLPSFTPAVKGPVGPTPEEEERNPRARSAKLRAG 317 Query: 315 MRTVERSIEDD-SFVHLPRLPTLSQF 339 +RT +EDD S LP+LP ++ Sbjct: 318 IRTENPPLEDDLSLFGLPKLPETNEL 343 >gi|256061496|ref|ZP_05451640.1| S-adenosyl-methyltransferase MraW [Brucella neotomae 5K33] gi|261325503|ref|ZP_05964700.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella neotomae 5K33] gi|261301483|gb|EEY04980.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella neotomae 5K33] Length = 346 Score = 327 bits (837), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 168/326 (51%), Positives = 217/326 (66%), Gaps = 6/326 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 HVPVL+ +VI L PAPG VI+D TFGAGGY+R + G++VIA+DRDP A+ G+ + Sbjct: 18 HVPVLIAEVIDALKPAPGAVIVDGTFGAGGYTRRILETGADVIAIDRDPTAIEAGRAMEK 77 Query: 80 DYKEQFSLFQATFSQLQDYVP-----DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++ + L ++ FS L + V K VDGVV D+GVSSMQID +RGFSFQK GPLD Sbjct: 78 EFPGRLILVESRFSALDEAVARMSGAGKKVDGVVLDIGVSSMQIDEAERGFSFQKDGPLD 137 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRMS G SA+D VN+ DL RI LGEE+ A RIA I KRR + PF T DL++ Sbjct: 138 MRMSSRGPSAADAVNRLKTGDLARIFNFLGEERHAGRIARMIEKRRAAKPFTRTLDLANA 197 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 I+ V + +RIHPATR FQALR++VN+E+ ELA+ L +AE+ LK GG L+VV+FHSLE Sbjct: 198 IETLVGRNPKDRIHPATRVFQALRVYVNDELGELARALLAAERILKPGGRLVVVTFHSLE 257 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 DR+VK+FFA R+G RHM ++ F K V PT E+ N R+RSAKLRAG Sbjct: 258 DRMVKRFFADRAGGSAGSRHMPETHMRLPSFTPAVKGAVGPTPEEEERNPRARSAKLRAG 317 Query: 315 MRTVERSIEDD-SFVHLPRLPTLSQF 339 +RT +EDD S LP+LP ++ Sbjct: 318 IRTENPPLEDDLSLFGLPKLPETNEL 343 >gi|254719470|ref|ZP_05181281.1| S-adenosyl-methyltransferase MraW [Brucella sp. 83/13] gi|265984477|ref|ZP_06097212.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella sp. 83/13] gi|306839249|ref|ZP_07472066.1| S-adenosyl-methyltransferase MraW [Brucella sp. NF 2653] gi|264663069|gb|EEZ33330.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella sp. 83/13] gi|306405796|gb|EFM62058.1| S-adenosyl-methyltransferase MraW [Brucella sp. NF 2653] Length = 346 Score = 327 bits (837), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 166/326 (50%), Positives = 218/326 (66%), Gaps = 6/326 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 HVPVL+ ++I L PAPG VI+D TFGAGGY+R + G++VIA+DRDP A+ G+ + Sbjct: 18 HVPVLIAEMIDALKPAPGAVIVDGTFGAGGYTRRILETGADVIAIDRDPTAIEAGRAMEK 77 Query: 80 DYKEQFSLFQATFSQLQDYVP-----DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++ + +L ++ FS L + V K VDGVV D+GVSSMQID +RGFSFQK GPLD Sbjct: 78 EFPGRLNLVESRFSALDEAVARMSGAGKKVDGVVLDIGVSSMQIDEAERGFSFQKDGPLD 137 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRMS G SA+D VN+ DL RI LGEE+ A RIA I KRR + PF T DL++ Sbjct: 138 MRMSSRGASAADAVNRLKTGDLARIFNFLGEERHAGRIARMIEKRRAAKPFTRTLDLANA 197 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 I+ V + +RIHPATR FQALR++VN+E+ ELA+ L +AE+ +K GG L+VV+FHSLE Sbjct: 198 IETLVGRNPKDRIHPATRVFQALRVYVNDELGELARALLAAERIIKPGGRLVVVTFHSLE 257 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 DR+VK+FFA R+G RHM ++ F K V PT E+ N R+RSAKLRAG Sbjct: 258 DRMVKRFFADRAGGSAGSRHMPETHMRLPSFTPAVKGAVGPTPEEEERNPRARSAKLRAG 317 Query: 315 MRTVERSIEDD-SFVHLPRLPTLSQF 339 +RT +EDD S LP+LP ++ Sbjct: 318 IRTENPPLEDDLSLFGLPKLPETNEL 343 >gi|241205565|ref|YP_002976661.1| S-adenosyl-methyltransferase MraW [Rhizobium leguminosarum bv. trifolii WSM1325] gi|262825385|sp|C6ARU7|RSMH_RHILS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|240859455|gb|ACS57122.1| S-adenosyl-methyltransferase MraW [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 341 Score = 326 bits (835), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 180/324 (55%), Positives = 227/324 (70%), Gaps = 3/324 (0%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+PVLL +V+A L PAPGK+ILD TFGAGGYS + G+ VIALDRDP A++ GQ + Sbjct: 19 HIPVLLAEVLAALAPAPGKLILDGTFGAGGYSSAILAAGAEVIALDRDPTAIAAGQAMVA 78 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 + +F L + FS L D+ P G+DGVV D+GVSSMQID +RGFSFQK+GPLDMRMS Sbjct: 79 AHGGRFKLVHSQFSHLADHAPQGGLDGVVLDIGVSSMQIDEAERGFSFQKNGPLDMRMSA 138 Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199 G+SA+DVVN+A V DL RI LGEE QA RIAHAI KRR PF+TT+DL+ LI+ Sbjct: 139 EGVSAADVVNRAKVADLIRIFHFLGEESQAPRIAHAIEKRRAEKPFETTRDLAGLIELVT 198 Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259 ++IHPATR FQALRIFVN+E+ ELAQ L +AE ALK GG L+ V+FHSLEDR+VK Sbjct: 199 PRKMKDKIHPATRVFQALRIFVNDELGELAQALFAAEAALKPGGRLVAVTFHSLEDRIVK 258 Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319 KFF+ R+GK RH+ ++ A F +I K +V ++ + N R+RSAKLRAG+RT E Sbjct: 259 KFFSDRAGKASGSRHLPVAHERAATFAAIGKPMVSASEAEAEINPRARSAKLRAGLRT-E 317 Query: 320 RSIE--DDSFVHLPRLPTLSQFRG 341 + E D S P L +L + G Sbjct: 318 AAAEAADMSLFGFPNLASLGKLGG 341 >gi|294852766|ref|ZP_06793439.1| methylase MraW [Brucella sp. NVSL 07-0026] gi|294821355|gb|EFG38354.1| methylase MraW [Brucella sp. NVSL 07-0026] Length = 346 Score = 323 bits (829), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 167/326 (51%), Positives = 216/326 (66%), Gaps = 6/326 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 HVPVL+ +VI L PAPG VI+D TFGAGGY+R + G++VIA+DRDP A+ G+ + Sbjct: 18 HVPVLIAEVIDALKPAPGAVIVDGTFGAGGYTRRILETGADVIAIDRDPTAIEAGRAMEK 77 Query: 80 DYKEQFSLFQATFSQLQDYVP-----DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++ + +L ++ FS L + V K VDGVV D+GVSSMQID +RGFSFQK GPLD Sbjct: 78 EFPGRLNLVESRFSALDEAVARMSGAGKKVDGVVLDIGVSSMQIDEAERGFSFQKDGPLD 137 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRMS G SA+D VN+ DL RI LGEE+ A RIA I KRR PF T DL++ Sbjct: 138 MRMSSRGPSAADAVNRLKTGDLARIFNFLGEERHAGRIARMIEKRRAPKPFTRTLDLANA 197 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 I+ V + +RIH ATR FQALR++VN+E+ ELA+ L +AE+ LK GG L+VV+FHSLE Sbjct: 198 IETLVGRNPKDRIHSATRVFQALRVYVNDELGELARALLAAERILKPGGRLVVVTFHSLE 257 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 DR+VK+FFA R+G RHM ++ F K V PT E+ N R+RSAKLRAG Sbjct: 258 DRMVKRFFADRAGGSAGSRHMPETHMRLPSFTPAVKGAVGPTPEEEERNPRARSAKLRAG 317 Query: 315 MRTVERSIEDD-SFVHLPRLPTLSQF 339 +RT +EDD S LP+LP ++ Sbjct: 318 IRTENPPLEDDLSLFGLPKLPETNEL 343 >gi|306844338|ref|ZP_07476930.1| S-adenosyl-methyltransferase MraW [Brucella sp. BO1] gi|306275410|gb|EFM57151.1| S-adenosyl-methyltransferase MraW [Brucella sp. BO1] Length = 346 Score = 322 bits (826), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 165/326 (50%), Positives = 217/326 (66%), Gaps = 6/326 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 HVPVL+ +VI L PAPG VI+D TFGAGGY+R + G++VIA+D DP A+ G+ + Sbjct: 18 HVPVLIAEVIDALKPAPGAVIVDGTFGAGGYTRRILETGADVIAIDCDPTAIEAGRAMEK 77 Query: 80 DYKEQFSLFQATFSQLQDYVP-----DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++ + +L ++ FS L + V K VDGVV D+GVSSMQID +RGFSFQK GPLD Sbjct: 78 EFPGRLNLVESRFSALDEAVARMSGAGKKVDGVVLDIGVSSMQIDEAERGFSFQKDGPLD 137 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRMS G SA+D VN+ DL RI LGEE+ A RIA I KRR + PF T DL++ Sbjct: 138 MRMSSRGPSAADAVNRLKTGDLARIFNFLGEERHAGRIARMIEKRRAAKPFTRTLDLANA 197 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 I+ V + +RIHPATR FQALR++VN+E+ ELA+ L +AE+ +K GG L++V+FHSLE Sbjct: 198 IETLVGRNPKDRIHPATRVFQALRVYVNDELGELARALLAAERIIKPGGRLVIVTFHSLE 257 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 DR+VK+FFA R+G RHM ++ F K V PT E+ N R+RSAKLRAG Sbjct: 258 DRMVKRFFADRAGGSAGSRHMPETHMRLPSFTPAVKGAVGPTPEEEERNPRARSAKLRAG 317 Query: 315 MRTVERSIEDD-SFVHLPRLPTLSQF 339 +RT +EDD S LP+LP ++ Sbjct: 318 IRTENPPLEDDLSLFGLPKLPETNEL 343 >gi|239832317|ref|ZP_04680646.1| S-adenosyl-methyltransferase MraW [Ochrobactrum intermedium LMG 3301] gi|239824584|gb|EEQ96152.1| S-adenosyl-methyltransferase MraW [Ochrobactrum intermedium LMG 3301] Length = 347 Score = 321 bits (822), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 168/326 (51%), Positives = 217/326 (66%), Gaps = 6/326 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 HVPVL+ +VI L P G VI+D TFGAGGY+R + G++VIA+DRDP A+ G+ + Sbjct: 19 HVPVLIAEVIDALKPVAGAVIVDGTFGAGGYTRRILEAGADVIAIDRDPTAIEAGRVMEK 78 Query: 80 DYKEQFSLFQATFSQLQDYVPD-KG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + + +L ++ FS L D V KG VDGVV D+GVSSMQID +RGFSFQK GPLD Sbjct: 79 QFPGRLNLVESRFSALDDAVSTVKGAGSKVDGVVLDIGVSSMQIDEAERGFSFQKDGPLD 138 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRMS G SA+DVVN+ DL RI LGEE+ A RIA I KRR + PF T DL++ Sbjct: 139 MRMSKKGPSAADVVNRLKTGDLARIFNFLGEERHAGRIARMIDKRRTAQPFTRTLDLANA 198 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 I+ V + +RIHPATR FQALR++VN+E+ ELA+ L +AE+ LK GG L+VV+FHSLE Sbjct: 199 IETLVGRNPKDRIHPATRVFQALRVYVNDELGELARALLAAERILKPGGRLVVVTFHSLE 258 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 DR+VK++FA R+G RH+ ++ A F K V PT E+ N R+RSAKLRAG Sbjct: 259 DRMVKRYFADRAGGSAGSRHLPETHVRLASFTPAIKGAVGPTAEEEERNPRARSAKLRAG 318 Query: 315 MRTVERSIEDD-SFVHLPRLPTLSQF 339 RT +EDD S LP+LP ++ Sbjct: 319 TRTENPPLEDDLSLFGLPKLPETNEL 344 >gi|153009066|ref|YP_001370281.1| S-adenosyl-methyltransferase MraW [Ochrobactrum anthropi ATCC 49188] gi|262824676|sp|A6WZP8|RSMH_OCHA4 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|151560954|gb|ABS14452.1| S-adenosyl-methyltransferase MraW [Ochrobactrum anthropi ATCC 49188] Length = 347 Score = 318 bits (816), Expect = 5e-85, Method: Compositional matrix adjust. Identities = 166/326 (50%), Positives = 216/326 (66%), Gaps = 6/326 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 HVPVL+ +VI L P G VI+D TFGAGGY+R + G++VIA+DRDP A+ G+ + Sbjct: 19 HVPVLIAEVIDALKPVSGAVIVDGTFGAGGYTRRILEAGADVIAIDRDPTAIEAGRAMEK 78 Query: 80 DYKEQFSLFQATFSQLQDYVPD-KG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + + L ++ FS L + V KG VDGVV D+GVSSMQID +RGFSFQK GPLD Sbjct: 79 QFPGRLDLVESRFSALDEAVSKVKGAGSKVDGVVLDIGVSSMQIDEAERGFSFQKDGPLD 138 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRMS G SA+DVVN+ DL RI LGEE+ A RIA I KRR + PF T DL++ Sbjct: 139 MRMSKKGPSAADVVNRLKTGDLARIFNFLGEERHAGRIARMIDKRRTAQPFTRTLDLANA 198 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 I+ V + +RIHPATR FQALR++VN+E+ ELA+ L +AE+ LK GG L+VV+FHSLE Sbjct: 199 IETLVGRNPKDRIHPATRVFQALRVYVNDELGELARALLAAERILKPGGRLVVVTFHSLE 258 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 DR+VK++FA R+G RH+ ++ F K V PT E+ N R+RSAKLRAG Sbjct: 259 DRMVKRYFADRAGGSAGSRHLPETHVRLPSFTPAVKGAVGPTAEEEERNPRARSAKLRAG 318 Query: 315 MRTVERSIEDD-SFVHLPRLPTLSQF 339 +RT +EDD S LP+LP ++ Sbjct: 319 IRTENPPLEDDLSLFGLPKLPETNEL 344 >gi|163761063|ref|ZP_02168140.1| S-adenosyl-methyltransferase protein [Hoeflea phototrophica DFL-43] gi|162281614|gb|EDQ31908.1| S-adenosyl-methyltransferase protein [Hoeflea phototrophica DFL-43] Length = 338 Score = 318 bits (815), Expect = 7e-85, Method: Compositional matrix adjust. Identities = 158/298 (53%), Positives = 206/298 (69%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+PVLL +V+A L AP ++I+D TFGAGGY+ + + G++VI DRDP A++ G E Sbjct: 19 HIPVLLREVLAALEAAPSQLIVDGTFGAGGYTAAILEAGASVIGFDRDPEAIANGAEMAA 78 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 + L A FS L ++V + +DG+V D+GVSSMQID +RGFSF + GPLDMRM+ Sbjct: 79 ASGGRLKLIHAQFSHLLEHVEEASLDGLVLDIGVSSMQIDEAERGFSFMRDGPLDMRMAQ 138 Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199 +GISA+DVVN+A DLTRI GILGEE+ A RIA AI R PF TT+ L+ LI+K Sbjct: 139 AGISAADVVNRAKASDLTRIFGILGEERHAGRIARAIEAERAKHPFSTTRQLAGLIEKVS 198 Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259 ++IHPATR FQALR +VN+E+ ELA L +AEKALK GG L+VV+FHSLEDR+VK Sbjct: 199 PRRPQDKIHPATRVFQALRTYVNDELGELATALFAAEKALKPGGRLVVVTFHSLEDRIVK 258 Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 +FF RSGK RH+ A F +I K+ VV +E+ N R+RSAKLRAG+R+ Sbjct: 259 RFFQDRSGKASGSRHLPAVQERKATFTAIGKQPVVAGEEECEANPRARSAKLRAGLRS 316 >gi|163868721|ref|YP_001609933.1| S-adenosyl-methyltransferase MraW [Bartonella tribocorum CIP 105476] gi|263445963|sp|A9IWB6|RSMH_BART1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|161018380|emb|CAK01938.1| S-adenosyl-methyltransferase [Bartonella tribocorum CIP 105476] Length = 332 Score = 318 bits (814), Expect = 9e-85, Method: Compositional matrix adjust. Identities = 169/322 (52%), Positives = 217/322 (67%), Gaps = 3/322 (0%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+PVLL+ V+A L P G ++D TFGAGGY+R+ K G+ VIALDRDP A++ GQ + Sbjct: 11 HIPVLLQPVLAGLMPLVGAKVIDGTFGAGGYTRALLKAGAQVIALDRDPHAIAAGQSLVD 70 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 ++ + L FSQL D V ++ VD V+ D+GVSSMQ+D +RGFSFQK GPLDMRM+ Sbjct: 71 EFFPRLRLVHMEFSQL-DRVVEEKVDAVILDIGVSSMQLDEAERGFSFQKDGPLDMRMAQ 129 Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199 +G SASDVVN KDL RI ILGEE+ A RIA I KRR PF T DL+ I+ V Sbjct: 130 TGFSASDVVNHLKAKDLARIFKILGEERYAGRIARMIEKRRAVQPFLRTGDLAYAIEALV 189 Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259 +RIHPATR FQALRI+VN+EI ELA+GL +AE+ LKAGG L VVSFHSLEDR+VK Sbjct: 190 GRKPGDRIHPATRVFQALRIYVNDEIGELARGLFAAERVLKAGGRLGVVSFHSLEDRMVK 249 Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319 +FF SRSG+ M RH+ PA F + K + +E++ N RSRSA+LR G+RT Sbjct: 250 RFFVSRSGEGMRSRHLPEIKHSPATFFPLFKGGITANKEELQQNPRSRSARLRMGVRTNA 309 Query: 320 RSIEDDSFVHLPRLPTLSQFRG 341 ++ +D + L L ++ F G Sbjct: 310 EALAED--MKLFGLAEIASFEG 329 >gi|118590900|ref|ZP_01548300.1| S-adenosyl-methyltransferase MraW [Stappia aggregata IAM 12614] gi|118436422|gb|EAV43063.1| S-adenosyl-methyltransferase MraW [Stappia aggregata IAM 12614] Length = 346 Score = 316 bits (809), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 163/327 (49%), Positives = 225/327 (68%), Gaps = 7/327 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 HVPVLL++V+ L P PG VI+D TFGAGGYSR+ ++G+ V+ +DRDP A++ GQE ++ Sbjct: 19 HVPVLLKEVLEWLAPQPGDVIVDGTFGAGGYSRAILELGARVVGIDRDPDAIAGGQELVK 78 Query: 80 DYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + + L F+ L+ + +GVDGVV DLGVSSMQ+D +RGFSF + GPLDMR Sbjct: 79 ASEGRLMLVPGQFADLETHARSCGFEGVDGVVLDLGVSSMQLDEAERGFSFLRDGPLDMR 138 Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 M +G SA+DVVN+ VKDL R++G+LGEEK+A+ +AHAI K R+ PF T +L++LI+ Sbjct: 139 MEQAGPSAADVVNELPVKDLIRVIGLLGEEKRATTVAHAIDKARKEKPFTRTLELANLIE 198 Query: 197 KTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 K + S K +IHPATR+FQALRI+VN E+ + A+ L +AE+ LK GG L++VSFHSLED Sbjct: 199 KVLGRSPKKAQIHPATRTFQALRIYVNGELHQAAEALGAAERILKPGGRLVLVSFHSLED 258 Query: 256 RLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 R+VK+FF R+ + RHM + PA F+ +T+K V + N R+RSAKLRAG Sbjct: 259 RIVKRFFQDRTRTRGGGSRHMPEEDVPPATFELLTRKAVEAASAETDINPRARSAKLRAG 318 Query: 315 MRTVERSIEDDSFVHLPRLPTLSQFRG 341 RT + E D +H +P L+ F G Sbjct: 319 RRTEAEARELD--IHQAGVPRLAAFHG 343 >gi|307944902|ref|ZP_07660239.1| S-adenosyl-methyltransferase MraW [Roseibium sp. TrichSKD4] gi|307771826|gb|EFO31050.1| S-adenosyl-methyltransferase MraW [Roseibium sp. TrichSKD4] Length = 346 Score = 315 bits (806), Expect = 9e-84, Method: Compositional matrix adjust. Identities = 164/329 (49%), Positives = 223/329 (67%), Gaps = 11/329 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 HVPVLL+ V+ L P PG+VI+D TFGAGGYSR+ + G++VI +DRDP A++ GQ + Sbjct: 19 HVPVLLDLVLEYLAPNPGEVIIDGTFGAGGYSRALLERGASVIGVDRDPDAIAGGQPLVE 78 Query: 80 DYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + +L F+ L+ + G VDGVV DLGVSSMQ+D +RGFSF + GPLDMR Sbjct: 79 ASDGRLTLVPGCFADLETHARSLGHDAVDGVVLDLGVSSMQLDEAERGFSFLRDGPLDMR 138 Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 M G SA+DVVN+ +V+DL RI+G+LGEEK+A+ +AHAI R+ PF T +L++L++ Sbjct: 139 MEQEGPSAADVVNELSVRDLIRIIGVLGEEKRATTVAHAIDNARKEGPFTRTGELAALVE 198 Query: 197 KTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 K + S K +IHPATR+FQALRI+VN E+ + AQ L +AE LK GG L+VVSFHSLED Sbjct: 199 KVLGRSPKKAQIHPATRTFQALRIYVNGELHQAAQALGAAENILKPGGRLVVVSFHSLED 258 Query: 256 RLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 R+VK+F A RS RHM + P F+ +T+K + T ++A N R+RSAKLRAG Sbjct: 259 RIVKRFLADRSKTHAGGSRHMPETEVEPPTFELLTRKAIDGTDAEIAGNPRARSAKLRAG 318 Query: 315 MRTVE--RSIEDDSFVHLPRLPTLSQFRG 341 RT RS++ +H +P L+ F+G Sbjct: 319 RRTTNPARSLD----IHAAGVPRLADFKG 343 >gi|306843215|ref|ZP_07475826.1| S-adenosyl-methyltransferase MraW [Brucella sp. BO2] gi|306286580|gb|EFM58157.1| S-adenosyl-methyltransferase MraW [Brucella sp. BO2] Length = 321 Score = 314 bits (804), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 161/318 (50%), Positives = 211/318 (66%), Gaps = 6/318 (1%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSL 87 +I L PAPG VI+D TFGAGGY+R + G++VIA+DRDP A+ G+ +++ + +L Sbjct: 1 MIDALKPAPGAVIVDGTFGAGGYTRRILETGADVIAIDRDPTAIEAGRAMEKEFPGRLNL 60 Query: 88 FQATFSQLQDYVP-----DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI 142 ++ FS L + V K VDGVV D+GVSSMQID +RGFSFQK GPLDMRMS G Sbjct: 61 VESRFSALDEAVARMSGAGKKVDGVVLDIGVSSMQIDEAERGFSFQKDGPLDMRMSSRGP 120 Query: 143 SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS 202 SA+D VN+ DL RI LGEE+ A RIA I KRR + PF T DL++ I+ V + Sbjct: 121 SAADAVNRLKTGDLARIFNFLGEERHAGRIARMIEKRRAAKPFTRTLDLANAIETLVGRN 180 Query: 203 KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF 262 +RIHPATR FQALR++VN+E+ ELA+ L +AE+ +K GG L+VV+FHSLEDR+VK+FF Sbjct: 181 PKDRIHPATRVFQALRVYVNDELGELARALLAAERIIKPGGRLVVVTFHSLEDRMVKRFF 240 Query: 263 ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSI 322 A R+G RHM ++ F K V PT E+ N R+RSAKLRAG+RT + Sbjct: 241 ADRAGGSAGSRHMPETHMRLPSFTPAVKGAVGPTPEEEERNPRARSAKLRAGIRTENPPL 300 Query: 323 EDD-SFVHLPRLPTLSQF 339 EDD S LP+LP ++ Sbjct: 301 EDDLSLFGLPKLPETNEL 318 >gi|240850900|ref|YP_002972300.1| S-adenosyl-methyltransferase MraW [Bartonella grahamii as4aup] gi|263445977|sp|C6AEK6|RSMH_BARGA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|240268023|gb|ACS51611.1| S-adenosyl-methyltransferase MraW [Bartonella grahamii as4aup] Length = 332 Score = 307 bits (786), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 163/322 (50%), Positives = 215/322 (66%), Gaps = 3/322 (0%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+PVLL+ V+A L P G ++D TFGAGGY+ + K G+ VIALDRDP A+S GQ + Sbjct: 11 HIPVLLQPVLAGLMPLVGAKVIDGTFGAGGYTCALLKAGAEVIALDRDPHAISAGQSLVE 70 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 ++ + L Q FSQL D V ++ VD V+ D+GVSSMQ+D +RGFSFQK GPLDMRM+ Sbjct: 71 EFFPRLRLVQMEFSQL-DRVVEEKVDAVILDIGVSSMQLDEAERGFSFQKDGPLDMRMAQ 129 Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199 +G +A DVVN +DL RI ILGEE+ A RIA I KRR PF T DL+ I+ + Sbjct: 130 TGFTAGDVVNHLKARDLARIFKILGEERYAGRIARMIEKRRVVQPFLRTGDLAYAIEALI 189 Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259 +RIHPATR FQALRI+VN+EI ELA+GL +AE+ LK GG L VVSFHSLEDR+VK Sbjct: 190 GRKPGDRIHPATRVFQALRIYVNDEIGELARGLFAAERILKPGGRLGVVSFHSLEDRMVK 249 Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319 +FF+ RSG+ M R++ PA F + K + ++E++ N RSRSA+LR G+RT Sbjct: 250 RFFSFRSGECMRSRYLPEIKTAPATFFPLFKGGITASEEELQQNPRSRSARLRIGVRTEA 309 Query: 320 RSIEDDSFVHLPRLPTLSQFRG 341 ++ D + L L ++ F G Sbjct: 310 EALAAD--MKLFGLAEIASFEG 329 >gi|254500690|ref|ZP_05112841.1| S-adenosyl-methyltransferase MraW [Labrenzia alexandrii DFL-11] gi|222436761|gb|EEE43440.1| S-adenosyl-methyltransferase MraW [Labrenzia alexandrii DFL-11] Length = 346 Score = 307 bits (786), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 161/327 (49%), Positives = 219/327 (66%), Gaps = 7/327 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 HVPVLL +V+ L+P PG+V++D TFGAGGYSR + + V+ +DRDP A++ GQE + Sbjct: 19 HVPVLLNEVLEWLDPQPGEVMVDGTFGAGGYSRKLLERDATVVGIDRDPDAIAGGQELVT 78 Query: 80 DYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + L F+ L+ + + GVDGVV DLGVSSMQ+D +RGFSF + GPLDMR Sbjct: 79 QSDGRLILVPGQFADLETHARESGFDGVDGVVLDLGVSSMQLDQAERGFSFLRDGPLDMR 138 Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 M +G SA+DVVN+ V+DL RI+G+LGEEK+A +AHAI R+ PF T +L++LI+ Sbjct: 139 MEQAGPSAADVVNELPVRDLIRIIGVLGEEKRAPSVAHAIDNARKEKPFSRTLELANLIE 198 Query: 197 KTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 K + S K +IHPATR+FQALRI+VN E+ + AQ L +AE+ LK GG L++VSFHSLED Sbjct: 199 KVLGRSPKKAQIHPATRTFQALRIYVNGELHQAAQALGAAERILKPGGRLVLVSFHSLED 258 Query: 256 RLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 R+VK+FF R+ + RHM PA F+ +T+K V + N R+RSAKLRAG Sbjct: 259 RIVKRFFQDRTKTRGGGSRHMPEEEVPPATFEILTRKAVEARDMETDANPRARSAKLRAG 318 Query: 315 MRTVERSIEDDSFVHLPRLPTLSQFRG 341 RT + E D +H+ +P L+ F G Sbjct: 319 RRTEAPARELD--IHVAGVPRLAAFHG 343 >gi|90418202|ref|ZP_01226114.1| putative S-adenosyl-methyltransferase mraW [Aurantimonas manganoxydans SI85-9A1] gi|90337874|gb|EAS51525.1| putative S-adenosyl-methyltransferase mraW [Aurantimonas manganoxydans SI85-9A1] Length = 348 Score = 305 bits (781), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 159/327 (48%), Positives = 212/327 (64%), Gaps = 9/327 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+PVLL +V+ L P PG+VI+D TFGAGGY+R+ G++VIA+DRDP A++ + Sbjct: 19 HIPVLLAEVLEALAPKPGEVIVDGTFGAGGYTRAILDAGADVIAIDRDPAAIATARGLAE 78 Query: 80 DYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 Y + + + F LQ V + VDG+V D+GVSSMQ+D +RGFSFQK GPL Sbjct: 79 GYDGRLAPVEGRFGDLQRIVETQAEAAGGRVDGIVLDVGVSSMQLDEAERGFSFQKDGPL 138 Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 DMRMS +G SA+DVVN+ V DL R++GILGEEKQA R+A AI RR PF T DL+ Sbjct: 139 DMRMSGAGPSAADVVNRLKVGDLLRVIGILGEEKQAGRVARAIEARRLEQPFTRTLDLAG 198 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 +I K V ++I PATRSFQ LRIFVN+E+ ELA+ L +AE+ LK GG L++VSFHSL Sbjct: 199 VIGKVVGRGPKDKIDPATRSFQGLRIFVNDELGELARALVAAERVLKPGGRLVIVSFHSL 258 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK-KVVVPTQEDVAFNRRSRSAKLR 312 EDR+VK+F RS RH+ + PA + + + V T + N R+RSAKLR Sbjct: 259 EDRIVKRFLRDRSSPPSGSRHL--PDMAPATQTFVARNRAVGATDAEAERNPRARSAKLR 316 Query: 313 AGMRTVERSIEDDSFVHLPRLPTLSQF 339 AG+RT E + +D + LP+L+ Sbjct: 317 AGIRTAEPARQDADELGFAGLPSLADL 343 >gi|319408832|emb|CBI82489.1| S-adenosyl-methyltransferase [Bartonella schoenbuchensis R1] Length = 356 Score = 304 bits (779), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 166/327 (50%), Positives = 221/327 (67%), Gaps = 6/327 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+PVLL+ V+A L P G ++D TFGAGGY+R+ G++VIALDRDP A+ GQ + Sbjct: 28 HIPVLLQPVLAALVPLAGAKVIDGTFGAGGYTRALLDAGADVIALDRDPHAIREGQLLVD 87 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 + + L Q FSQL D V ++ VD V+ D+GVSSMQ+D +RGFSFQK GPLDMRM+ Sbjct: 88 QFFPRLRLVQMEFSQL-DCVVEEKVDAVILDIGVSSMQLDEAERGFSFQKDGPLDMRMAQ 146 Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199 +G +ASDVVN V +L+ + +LGEE+ A RIA I KRR+ PF T DL++ I+ V Sbjct: 147 TGFTASDVVNCLKVNELSHMFRVLGEERHAGRIARMIEKRRRIRPFLRTCDLANAIEVLV 206 Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259 +RIHPATR FQALRI+VN+E+ EL +GL +AEK LKAGG L VVSFHSLEDR+VK Sbjct: 207 GRKPGDRIHPATRVFQALRIYVNDELGELTRGLLAAEKVLKAGGRLGVVSFHSLEDRIVK 266 Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319 KFF++RSG+ R++ + PA F + K V +E+V N R+RSAKLR G+RT E Sbjct: 267 KFFSARSGEGGRSRYLPEIKSSPATFLPLFKGVKTANEEEVQKNPRARSAKLRVGIRTQE 326 Query: 320 ---RSIED--DSFVHLPRLPTLSQFRG 341 R+ ED + + L L ++ F+G Sbjct: 327 DVIRTQEDVIKADMELFGLAEITSFKG 353 >gi|49474464|ref|YP_032506.1| S-adenosyl-methyltransferase MraW [Bartonella quintana str. Toulouse] gi|54036185|sp|Q6G116|RSMH_BARQU RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|49239968|emb|CAF26373.1| hypothetical protein BQ08940 [Bartonella quintana str. Toulouse] Length = 332 Score = 303 bits (775), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 164/322 (50%), Positives = 211/322 (65%), Gaps = 3/322 (0%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+PVLL+ V+A L P G ++D TFGAGGY+R+ G+ VIALDRDP AV GQ + Sbjct: 11 HIPVLLQPVLAGLMPLIGAKVIDGTFGAGGYTRALLNAGAQVIALDRDPHAVREGQSLVD 70 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 ++ + L Q FSQL D V ++ VD V+ D+GVSSMQ D +RGFSFQK GPLDMRM+ Sbjct: 71 EFFPRLRLMQMEFSQL-DRVVEEKVDAVILDIGVSSMQFDEAERGFSFQKDGPLDMRMAQ 129 Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199 +G +A DVVN+ DL RI ILGEE+ A RIA I KRR PF T DL+ I+ V Sbjct: 130 TGFTAGDVVNRLKKDDLARIFKILGEERYAGRIARMIEKRRCVQPFLRTGDLAHAIEALV 189 Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259 +RIHPATR FQALRI+VN+EI ELA+GL +AE LK GG L VVSFHSLEDR+VK Sbjct: 190 GRKPGDRIHPATRVFQALRIYVNDEIGELARGLFAAESVLKPGGRLGVVSFHSLEDRMVK 249 Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319 +FF++RSG R++ A PA F S+ K + ++E++ N RSRSA+LR G+RT Sbjct: 250 RFFSARSGGCRRSRYLPEIEAVPATFFSLFKGAITASKEELQQNPRSRSARLRIGIRTEA 309 Query: 320 RSIEDDSFVHLPRLPTLSQFRG 341 + D + L ++ F G Sbjct: 310 ECLAKD--IKLFDFAEIASFEG 329 >gi|319406014|emb|CBI79645.1| S-adenosyl-methyltransferase [Bartonella sp. AR 15-3] Length = 332 Score = 303 bits (775), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 164/322 (50%), Positives = 211/322 (65%), Gaps = 3/322 (0%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+PVLL+ V+A L P G ++D TFGAGGYSR+ G+ VIALDRDP AV GQ + Sbjct: 11 HIPVLLQSVLAGLAPLAGAKVIDGTFGAGGYSRALLNAGAEVIALDRDPQAVREGQALVD 70 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 + + L QA FSQL D++ + VD V+ D+GVSSMQ+D +RGFSFQK GPLDMRM+ Sbjct: 71 QFFPRLRLVQAEFSQL-DHIVEGLVDAVILDIGVSSMQLDEAERGFSFQKDGPLDMRMAQ 129 Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199 +G +A+DVVN V DL ++ LGEE+ A RIA I KRR PF T DL+ I+ + Sbjct: 130 TGFTAADVVNYLKVDDLAQLFKTLGEERYAVRIARMIEKRRCIRPFLRTIDLAHAIEALI 189 Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259 N IHPATR FQALRI+VNNE+ ELA L + E+ LKAGG L VVSFHSLEDR+VK Sbjct: 190 GRKPGNHIHPATRVFQALRIYVNNELNELACALFAVERVLKAGGRLAVVSFHSLEDRMVK 249 Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319 KF ++RSG R++ + PA F + K V TQE++ N R+RSA+LR G+RT E Sbjct: 250 KFLSARSGHKKGSRYLPEIKSVPATFIPLYKGVKTATQEELQKNPRARSARLRIGVRTQE 309 Query: 320 RSIEDDSFVHLPRLPTLSQFRG 341 +I D + L L ++ F G Sbjct: 310 AAIAAD--MKLFGLAEIAHFEG 329 >gi|319899165|ref|YP_004159258.1| S-adenosyl-methyltransferase [Bartonella clarridgeiae 73] gi|319403129|emb|CBI76687.1| S-adenosyl-methyltransferase [Bartonella clarridgeiae 73] Length = 346 Score = 302 bits (773), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 162/322 (50%), Positives = 212/322 (65%), Gaps = 3/322 (0%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+PVLL+ V+A + P G ++D TFGAGGYSR+ G+ VIALDRDP A+ GQ + Sbjct: 25 HIPVLLQSVLAGIAPLAGARVIDGTFGAGGYSRALLNAGAEVIALDRDPLAIREGQALVD 84 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 + + L QA FSQL D + + VD V+ D+GVSSMQ+D +RGFSFQK GPLDMRM+ Sbjct: 85 QFFPRLHLIQAKFSQL-DRIVEGEVDAVILDIGVSSMQLDEAERGFSFQKDGPLDMRMAQ 143 Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199 +G +A+DVVN V DL ++ LGEE+ A RIA I KRR PF T DL+ I+ + Sbjct: 144 TGFTAADVVNYLKVDDLAQLFKTLGEERYAGRIARMIDKRRYVRPFLRTIDLAHAIETLI 203 Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259 + IHPATR FQALRI+VNNE+ ELA GL +AE+ LKA G L VVSFHSLEDR+VK Sbjct: 204 GRKPGDHIHPATRVFQALRIYVNNELGELACGLFAAERVLKAEGRLAVVSFHSLEDRMVK 263 Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319 KF ++RSG R++ + PA F + K V TQE++ N R+RSA+LR G+RT E Sbjct: 264 KFLSARSGYKKGSRYLPEIKSVPATFVPLFKGVKTATQEELQQNPRARSARLRIGVRTQE 323 Query: 320 RSIEDDSFVHLPRLPTLSQFRG 341 +I D + L L +++F G Sbjct: 324 AAIAAD--MKLFGLAEIARFEG 343 >gi|319407511|emb|CBI81159.1| S-adenosyl-methyltransferase [Bartonella sp. 1-1C] Length = 349 Score = 301 bits (770), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 159/306 (51%), Positives = 204/306 (66%), Gaps = 1/306 (0%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+PVLL+ V+A L P G ++D TFGAGGYS + G+ VIALDRDP A+ GQ + Sbjct: 28 HIPVLLQSVLAELAPLAGAKVIDGTFGAGGYSCALLNAGAEVIALDRDPHAIREGQALVD 87 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 + + L QA FSQL D++ ++ VD V+ D+GVSSMQ+D +RGFSFQK GPLDMRM Sbjct: 88 QFFPRLRLVQAEFSQL-DHIVEEKVDAVILDIGVSSMQLDEPERGFSFQKDGPLDMRMGQ 146 Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199 G +A+DVVN DL ++ GEE+ A RIA I KRR PF T DL+ I+ + Sbjct: 147 IGFTAADVVNYLRADDLAQLFKTFGEERYAVRIARMIEKRRCIRPFLRTIDLAHAIESLI 206 Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259 + IHPATR FQALRI+VNNE+ ELA GL +AE+ LKAGG L VVSFHSLEDR+VK Sbjct: 207 GRKLGDHIHPATRVFQALRIYVNNELGELACGLFAAERVLKAGGRLAVVSFHSLEDRMVK 266 Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319 KFF++RSG R++ + PA F + K V PTQE++ N R+RSA+LR G+RT E Sbjct: 267 KFFSARSGHKKGSRYLPEIKSAPATFIPLFKGVKTPTQEELQHNPRARSARLRMGVRTQE 326 Query: 320 RSIEDD 325 +I D Sbjct: 327 VAIAAD 332 >gi|121602081|ref|YP_989236.1| S-adenosyl-methyltransferase MraW [Bartonella bacilliformis KC583] gi|263445982|sp|A1UTD3|RSMH_BARBK RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|120614258|gb|ABM44859.1| S-adenosyl-methyltransferase MraW [Bartonella bacilliformis KC583] Length = 331 Score = 300 bits (769), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 157/306 (51%), Positives = 209/306 (68%), Gaps = 1/306 (0%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+PVLLE V+A L P G ++D TFGAGGY+R+ G+NV ALDRDP A+ G+ + Sbjct: 11 HIPVLLEPVLAGLAPLSGATVIDGTFGAGGYTRALLNAGANVTALDRDPHAIREGKPLVD 70 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 + + L Q FSQL D V ++ VD V+ D+GVSSMQ+D +RGFSFQK GPLDMRM+ Sbjct: 71 QFFPRLRLVQTEFSQL-DRVIEEKVDAVILDIGVSSMQLDEAERGFSFQKDGPLDMRMAQ 129 Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199 +G+SASDVVN + DL +I ILGEE+ +SRIA I KRR+ PF T+DL+ I+ + Sbjct: 130 TGLSASDVVNHLKIDDLIQIFRILGEERHSSRIAKMIEKRRRIRPFLRTRDLAHEIEVLI 189 Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259 +RIHPATR FQALRI+VN+E+ EL +GL +AE+ LKAGG L VVSFHSLEDR+VK Sbjct: 190 GRKPGDRIHPATRVFQALRIYVNDELNELTRGLFAAERVLKAGGRLGVVSFHSLEDRIVK 249 Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319 KFF+ SG R++ + PA F + K ++E++ N R+RSA+LR G+RT Sbjct: 250 KFFSFCSGNRKGSRYLPEVESAPATFFPLFKGGKTASEEELQKNPRARSARLRIGIRTQV 309 Query: 320 RSIEDD 325 ++E D Sbjct: 310 DAMEAD 315 >gi|319404518|emb|CBI78123.1| S-adenosyl-methyltransferase [Bartonella rochalimae ATCC BAA-1498] Length = 349 Score = 300 bits (769), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 158/306 (51%), Positives = 204/306 (66%), Gaps = 1/306 (0%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+PVLL+ V+A L P G ++D TFGAGGYS + G+ VIALDRDP A+ GQ + Sbjct: 28 HIPVLLQSVLAELAPLAGSKVIDGTFGAGGYSCALLNAGAEVIALDRDPHAIREGQALVD 87 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 + + L QA FSQL D++ ++ VD V+ D+GVSSMQ+D +RGFSFQK GPLDMRM Sbjct: 88 QFFPRLRLVQAEFSQL-DHIVEEKVDAVILDIGVSSMQLDEPERGFSFQKDGPLDMRMGQ 146 Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199 G +A+DVVN DL ++ GEE+ A RIA I KRR PF T DL+ ++ + Sbjct: 147 IGFTAADVVNYLKADDLAQLFKTFGEERYAVRIARMIEKRRCIRPFLRTIDLAHAVESLI 206 Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259 + IHPATR FQALRI+VNNE+ ELA GL +AE+ LKAGG L VVSFHSLEDR+VK Sbjct: 207 GRKPGDHIHPATRVFQALRIYVNNELAELACGLFAAERVLKAGGRLAVVSFHSLEDRMVK 266 Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319 KFF++RSG R++ + PA F + K V PTQE++ N R+RSA+LR G+RT E Sbjct: 267 KFFSARSGHKKGSRYLPEIKSAPATFIPLFKGVKTPTQEELQQNPRARSARLRMGVRTQE 326 Query: 320 RSIEDD 325 +I D Sbjct: 327 VAIAAD 332 >gi|110634365|ref|YP_674573.1| S-adenosyl-methyltransferase MraW [Mesorhizobium sp. BNC1] gi|123353547|sp|Q11GR7|RSMH_MESSB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|110285349|gb|ABG63408.1| S-adenosyl-methyltransferase MraW [Chelativorans sp. BNC1] Length = 339 Score = 300 bits (767), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 151/315 (47%), Positives = 214/315 (67%), Gaps = 3/315 (0%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+PVLL +V+ L PA GK+ILD TFGAGGY+R+ + G++VIA+D+DP A++ G+ + Sbjct: 16 HLPVLLAEVLEALEPARGKLILDGTFGAGGYTRALLEAGADVIAIDQDPDAIAGGKPLAQ 75 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 ++ + L + FS++++ + + +DG+V D+GVSSMQ+D +RGFSF++ GPLDMRM Sbjct: 76 EFAPRLRLERGRFSEMEE-IAGEMLDGIVLDVGVSSMQLDQAERGFSFRREGPLDMRMGQ 134 Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199 G SA+DVVN+ DL RI G+LGEE+ A RIA AI K R PF+TT DL+ L+++ + Sbjct: 135 EGTSAADVVNKFKAGDLARIFGLLGEERHAGRIARAIEKGRAEKPFRTTGDLAELVERVI 194 Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259 ++IHPATR FQ LRIFVN+E+ ELA+ L +AE+ LK GG+L VV+FHSLEDR+VK Sbjct: 195 GHRPTDKIHPATRVFQGLRIFVNDELGELARALFAAERLLKPGGILAVVTFHSLEDRIVK 254 Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319 +F +RSG RH+ A VF+ K V P + + A N R+RSA LRA RT Sbjct: 255 RFLQARSGPQAQSRHLPEKAAAQPVFEKPMKP-VSPGEAETAENPRARSAHLRAARRTAH 313 Query: 320 RS-IEDDSFVHLPRL 333 + ++D +P L Sbjct: 314 PAGVQDFKLFGVPAL 328 >gi|49475863|ref|YP_033904.1| S-adenosyl-methyltransferase MraW [Bartonella henselae str. Houston-1] gi|54036186|sp|Q6G2P7|RSMH_BARHE RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|49238671|emb|CAF27917.1| hypothetical protein BH11320 [Bartonella henselae str. Houston-1] Length = 346 Score = 298 bits (764), Expect = 6e-79, Method: Compositional matrix adjust. Identities = 156/298 (52%), Positives = 204/298 (68%), Gaps = 1/298 (0%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+PVLL+ V+A L P G ++D TFGAGGY+R+ G+ VIALDRDP A+ GQ + Sbjct: 25 HIPVLLQPVLAGLIPLVGAKVIDGTFGAGGYTRALLNAGAQVIALDRDPHAIREGQSLVD 84 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 ++ + L Q FSQL D V ++ VD V+ D+GVSSMQ+D +RGFSFQK GPLDMRM+ Sbjct: 85 EFFPRLRLVQGNFSQL-DCVVEEKVDAVILDIGVSSMQLDEAERGFSFQKDGPLDMRMAQ 143 Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199 +G +A+DVVN+ +L RI ILGEE+ A RIA I KRR PF T DL+ I+ V Sbjct: 144 TGFTAADVVNRLKSDELARIFKILGEERYARRIARMIEKRRCVQPFLRTGDLAHAIEVLV 203 Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259 RIHPATR FQALRI+VN+EI ELA+GL +AE+ LK GG L VVSFHSLEDR+VK Sbjct: 204 GRKSGERIHPATRVFQALRIYVNDEIGELARGLFAAERVLKPGGRLGVVSFHSLEDRMVK 263 Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 +FF++RSG+ + R++ PA F + K + +E++ N RSRSA+LR G+RT Sbjct: 264 RFFSARSGESVRSRYLPEIEMAPATFFPLFKGGITANKEELERNPRSRSARLRIGVRT 321 >gi|304392263|ref|ZP_07374205.1| S-adenosyl-methyltransferase MraW [Ahrensia sp. R2A130] gi|303296492|gb|EFL90850.1| S-adenosyl-methyltransferase MraW [Ahrensia sp. R2A130] Length = 394 Score = 298 bits (762), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 159/323 (49%), Positives = 208/323 (64%), Gaps = 8/323 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+PV+LE+V+ L P G I+DATFGAGGYSR+ G+ VI +DRDP AV+ Q + Sbjct: 64 HIPVMLEEVLRALRPLDGSTIVDATFGAGGYSRAMLGGGATVIGIDRDPDAVAAAQPMLA 123 Query: 80 DYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 ++ +L FSQL G VDGVV D+GVSSMQID +RGFSF + GPLDMR Sbjct: 124 EFDGSLTLHHGRFSQLDKICRSAGHETVDGVVADIGVSSMQIDQAERGFSFLRDGPLDMR 183 Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 M SG SA+DVVN DLTR++GILGEE+QASR++ IV+ R PF+TT L+SL++ Sbjct: 184 MEQSGPSAADVVNLLPRNDLTRVIGILGEERQASRVSAQIVEDRAKRPFETTLQLASLVE 243 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 K + ++IHPATR+FQALRIFVN E+++LAQ L +AE+ L GG L+VV+FHSLEDR Sbjct: 244 KVLSRKAKDKIHPATRTFQALRIFVNGELDQLAQALLAAERVLVPGGRLVVVTFHSLEDR 303 Query: 257 LVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 LVK F R+ + RHM + F I + + + + N R+RSAKLR +R Sbjct: 304 LVKIFLKDRAEQASGSRHMPVVDITTPTFNQIKRGAISASAAEAEINPRARSAKLRWAVR 363 Query: 317 T-----VERSIEDDSFVHLPRLP 334 T V + +D S LPRLP Sbjct: 364 TEEPPRVNSNGDDLSIFGLPRLP 386 >gi|254476257|ref|ZP_05089643.1| S-adenosyl-methyltransferase MraW [Ruegeria sp. R11] gi|214030500|gb|EEB71335.1| S-adenosyl-methyltransferase MraW [Ruegeria sp. R11] Length = 330 Score = 290 bits (742), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 160/331 (48%), Positives = 212/331 (64%), Gaps = 12/331 (3%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRD 67 M++ + G HVPVLL ++A + P G+ LD TFGAGGYSR + G++ VI +DRD Sbjct: 1 MTTDRQTSSGPHVPVLLRPLLAAVAPVSGR-WLDGTFGAGGYSRGLLEAGADHVIGVDRD 59 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 P A Q+ + DY + + Q FS++ +Y D +DGVV DLGVSSMQ+D +RGFSF Sbjct: 60 PLAFEMAQDWIGDYDGRLTFQQGVFSRMDEYAQD--LDGVVLDLGVSSMQLDMAERGFSF 117 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRMS G SA+D+V + + L IL + GEE+ + RIA AIVK R AP T Sbjct: 118 MRDGPLDMRMSQDGPSAADLVAELDEAALADILFMFGEERASRRIARAIVKARTEAPITT 177 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T L+ +I+ + SK + HPATRSFQ LRI VN E EEL +GL +AE+ALK GGLL V Sbjct: 178 TLQLAGIIESCLPRSKPGQSHPATRSFQGLRIAVNAEYEELFEGLLAAERALKPGGLLAV 237 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRS 306 V+FHS+EDR+VK+FF R+GK P P+ F +T+K V P E++A N RS Sbjct: 238 VTFHSIEDRMVKRFFQHRAGKTGRANRYAPEQEETPSQFTLVTRKAVGPDDEELAENPRS 297 Query: 307 RSAKLRAGMRT----VERSIEDDSFVHLPRL 333 RSA+LR G RT VE S +D + +P+L Sbjct: 298 RSARLRVGRRTDAAPVEISAKD---IGMPQL 325 >gi|163738706|ref|ZP_02146120.1| methyltransferase [Phaeobacter gallaeciensis BS107] gi|163741583|ref|ZP_02148974.1| S-adenosyl-methyltransferase MraW [Phaeobacter gallaeciensis 2.10] gi|161385317|gb|EDQ09695.1| S-adenosyl-methyltransferase MraW [Phaeobacter gallaeciensis 2.10] gi|161388034|gb|EDQ12389.1| S-adenosyl-L-methionine-dependent methyltransferase [Phaeobacter gallaeciensis BS107] Length = 335 Score = 288 bits (736), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 156/317 (49%), Positives = 205/317 (64%), Gaps = 5/317 (1%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRD 67 M++ + G HVPVLL ++ + P G+ LD TFGAGGYSR + G++ VI +DRD Sbjct: 1 MTTDRPTSTGPHVPVLLRPLLKAVAPVSGR-WLDGTFGAGGYSRGLLEAGADHVIGVDRD 59 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 P A + + DY + +L Q FS++ +Y D +DGVV DLGVSSMQ+D +RGFSF Sbjct: 60 PLAFEMAESWIGDYAGRLTLQQGVFSRMDEYAQD--LDGVVLDLGVSSMQLDLAERGFSF 117 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRMS G SA+D+V + + L IL + GEE+ + RIA AIVK R AP T Sbjct: 118 MRDGPLDMRMSQDGPSAADLVAELDEAALADILFLFGEERASRRIARAIVKARTEAPITT 177 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T L+ +I+ + SK + HPATRSFQ LRI VN E EEL +GL +AE+ALK GGLL V Sbjct: 178 TLQLAGIIEHCLPRSKPGQSHPATRSFQGLRIAVNAEYEELFEGLLAAERALKPGGLLAV 237 Query: 248 VSFHSLEDRLVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+FHS+EDR+VK+FF R+GK A R+ P+ F +T+K V P E++A N RS Sbjct: 238 VTFHSIEDRMVKRFFQHRAGKTGRANRYAPEVEETPSQFALVTRKAVGPDDEELAENPRS 297 Query: 307 RSAKLRAGMRTVERSIE 323 RSA+LR G RT IE Sbjct: 298 RSARLRVGRRTEATPIE 314 >gi|167647637|ref|YP_001685300.1| S-adenosyl-methyltransferase MraW [Caulobacter sp. K31] gi|263445765|sp|B0T839|RSMH_CAUSK RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|167350067|gb|ABZ72802.1| S-adenosyl-methyltransferase MraW [Caulobacter sp. K31] Length = 322 Score = 287 bits (734), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 147/301 (48%), Positives = 196/301 (65%), Gaps = 3/301 (0%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 HV VLL +V+A L PG +++D TFGAGGY+R+ G++V A DRDP E Sbjct: 15 HVSVLLGEVVAALASGPGDMVIDGTFGAGGYTRAILATGASVTAFDRDPSVQRFAAE-FS 73 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 +F L Q FSQ+ +Y+ D VDGV DLGVSSMQ+D +RGFSF + GPLDMRM Sbjct: 74 ATDGRFRLIQDRFSQITEYLEDASVDGVTLDLGVSSMQLDEAERGFSFMRDGPLDMRMGA 133 Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199 G +A+D+VN + +L RIL + GEE + RIA I+KRR+ PF T DL+ +I++ + Sbjct: 134 DGPTAADLVNDLDHTELARILYVYGEEHASRRIASFIIKRREERPFTRTLDLAHVIERAL 193 Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259 K ++HPATRSFQ LRI VN E++EL GL +AE+ LK GG L VV+FHSLEDR+VK Sbjct: 194 GGRKGAKVHPATRSFQGLRIAVNAELDELEAGLLAAERVLKPGGRLAVVTFHSLEDRIVK 253 Query: 260 KFFASRSGKVM-AVRHMIPSNA-HPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 F A R+G+ RH+ P A P FQ I+ K + P + ++A N R+RS+KLRA +RT Sbjct: 254 NFLAERAGRTPGGSRHLPPVEAGAPPSFQLISSKAIAPGEAELAVNPRARSSKLRAAVRT 313 Query: 318 V 318 Sbjct: 314 T 314 >gi|254470515|ref|ZP_05083919.1| S-adenosyl-methyltransferase MraW [Pseudovibrio sp. JE062] gi|211960826|gb|EEA96022.1| S-adenosyl-methyltransferase MraW [Pseudovibrio sp. JE062] Length = 346 Score = 280 bits (716), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 157/329 (47%), Positives = 215/329 (65%), Gaps = 11/329 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+PVLL++V + PAPG VI+D TFGAGGYS +F + G++VI +DRDP A+ G+ + Sbjct: 19 HIPVLLDRVREAMAPAPGDVIVDGTFGAGGYSSAFLEAGASVIGIDRDPDAIRDGRALEQ 78 Query: 80 DYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + L F L+++ G VDGVV DLGVSSMQ+D RGFSF+ GPLDMR Sbjct: 79 ASDGRLKLVHGQFVDLEEHARALGHDAVDGVVMDLGVSSMQLDQAARGFSFRFDGPLDMR 138 Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 M G SA+DVVN KDLTRI+G+LGEEK+AS ++HAI + R+ PF+TT +L+ +I+ Sbjct: 139 MEQDGPSAADVVNTMERKDLTRIIGLLGEEKRASSVSHAICQAREEKPFETTLELARVIE 198 Query: 197 KTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 K V + K IHPATR+FQALRI+VN E+ + A L +AE+ L+ GG L+VV+FHSLED Sbjct: 199 KVVKRNPKKASIHPATRTFQALRIYVNGELHQAAGALAAAERILRPGGRLVVVTFHSLED 258 Query: 256 RLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 R+VK+F A R + RHM + P F+ I K + E+V+ N R+RSA+LRAG Sbjct: 259 RIVKRFLADRCKTRGGGSRHMPEVDIPPPTFEFIVKGNQDASVEEVSENPRARSARLRAG 318 Query: 315 MR--TVERSIEDDSFVHLPRLPTLSQFRG 341 R + R ++ +H +P L+ F G Sbjct: 319 RRLDSPARPLD----IHEAGVPRLASFHG 343 >gi|56696072|ref|YP_166426.1| S-adenosyl-methyltransferase MraW [Ruegeria pomeroyi DSS-3] gi|68565435|sp|Q5LU79|RSMH_SILPO RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|56677809|gb|AAV94475.1| S-adenosyl-methyltransferase MraW [Ruegeria pomeroyi DSS-3] Length = 331 Score = 280 bits (716), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 146/300 (48%), Positives = 197/300 (65%), Gaps = 5/300 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETM 78 H+PVLL ++A + P G + LD TFGAGGY+R G++ VIA+DRDP A Sbjct: 13 HIPVLLRPLLAAVAPVSG-IWLDGTFGAGGYTRGLLAAGADRVIAVDRDPLAFELAAGWA 71 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138 +DY ++ + Q FS++ +Y D +DGVV DLGVSSMQ+D +RGFSF K GPLDMRMS Sbjct: 72 KDYGDRLVMQQGVFSRMDEYASD--LDGVVLDLGVSSMQLDLAERGFSFMKDGPLDMRMS 129 Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198 G SA+D+VN A DL IL GEE+ + RIA AIVK R AP +TT L++L++ Sbjct: 130 QEGPSAADLVNTATEADLADILFHYGEERASRRIARAIVKARAEAPIETTLQLAALVESC 189 Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258 + K + HPATRSFQALRI VN E +EL +GL +AE+ALK GG L VV+FHS+EDR+V Sbjct: 190 LPRPKPGQSHPATRSFQALRIAVNAEYDELFEGLMAAERALKPGGKLAVVTFHSIEDRMV 249 Query: 259 KKFFASRSGKVMAVRHMIPSNAHPAV-FQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 K+F +R+G+ P A F+ +++K + P +++A N R+RSAKLR +RT Sbjct: 250 KRFLQARAGRSGRANRYAPETVEDAPQFELLSRKAIGPDDQELAENPRARSAKLRVALRT 309 >gi|126741287|ref|ZP_01756965.1| S-adenosyl-methyltransferase MraW [Roseobacter sp. SK209-2-6] gi|126717605|gb|EBA14329.1| S-adenosyl-methyltransferase MraW [Roseobacter sp. SK209-2-6] Length = 330 Score = 279 bits (714), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 152/316 (48%), Positives = 199/316 (62%), Gaps = 5/316 (1%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRD 67 M++ + G H+PVLL ++A + P G+ LD TFGAGGY+R + G S VI +DRD Sbjct: 1 MTTDQNTANGPHIPVLLRPLLAAVAPVSGR-WLDGTFGAGGYTRGLLEEGASQVIGVDRD 59 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 P A Q +Y ++ L + FS++ +Y D +DGVV DLGVSSMQ+D +RGFSF Sbjct: 60 PLAFELAQPWATEYGDRLLLQEGVFSRMDEYAQD--LDGVVLDLGVSSMQLDLAERGFSF 117 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRMS SG SA+D+V L IL GEE+ + RIA AIVK R P T Sbjct: 118 MRDGPLDMRMSQSGPSAADLVANLEEAQLADILFQFGEERASRRIAKAIVKARAEEPITT 177 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T L+S+++ + SK + HPATRSFQALRI VN E EEL GL +AE+ALK GGLL V Sbjct: 178 TLQLASIVEGCLPRSKPGQSHPATRSFQALRIAVNAEYEELFNGLLAAERALKPGGLLAV 237 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-FQSITKKVVVPTQEDVAFNRRS 306 V+FHS+EDR+VK+FF R+GK P F+ +T+K V P E++A N RS Sbjct: 238 VTFHSVEDRMVKRFFQHRAGKTGRANRYAPELEEVETQFELVTRKAVGPDDEELAENPRS 297 Query: 307 RSAKLRAGMRTVERSI 322 RSA+LR G RT+ + Sbjct: 298 RSARLRVGRRTMAEPV 313 >gi|254467183|ref|ZP_05080594.1| S-adenosyl-methyltransferase MraW [Rhodobacterales bacterium Y4I] gi|206688091|gb|EDZ48573.1| S-adenosyl-methyltransferase MraW [Rhodobacterales bacterium Y4I] Length = 330 Score = 279 bits (713), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 146/302 (48%), Positives = 196/302 (64%), Gaps = 5/302 (1%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQE 76 G H+PVLL ++ + P G+ LD TFGAGGY+R G++ VIA+DRDP A + Sbjct: 10 GPHIPVLLRPLLKAVAPVSGR-WLDGTFGAGGYTRGLLDAGADQVIAVDRDPLAFELAKP 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 Y ++ L Q FS++ +Y D +DGVV DLGVSSMQ+D +RGFSF K GPLDMR Sbjct: 69 WAGQYGDRLILQQGVFSRMDEYAQD--LDGVVLDLGVSSMQLDLAERGFSFMKDGPLDMR 126 Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 MS SG SA+D++ + + IL GEE+ + RIA AIV+ R++ P TT L+ +I+ Sbjct: 127 MSQSGPSAADLIAELTEAQIADILYHYGEERASRRIARAIVREREAEPITTTLRLAGIIE 186 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 + K + HPATRSFQ LRI VN E EEL +GL +AE+ALK GGLL VV+FHS+EDR Sbjct: 187 SCLPRPKPGQSHPATRSFQGLRIAVNAEYEELFEGLLAAERALKPGGLLAVVTFHSVEDR 246 Query: 257 LVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 +VK+FF R+GK P PA F+ +T+K V P ++++A N R+RSA+LR G Sbjct: 247 MVKRFFQHRAGKTGRANRYAPEQEETPAQFELVTRKAVGPDEQELAENPRARSARLRVGR 306 Query: 316 RT 317 RT Sbjct: 307 RT 308 >gi|86137691|ref|ZP_01056268.1| S-adenosyl-methyltransferase MraW [Roseobacter sp. MED193] gi|85826026|gb|EAQ46224.1| S-adenosyl-methyltransferase MraW [Roseobacter sp. MED193] Length = 330 Score = 278 bits (712), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 150/302 (49%), Positives = 196/302 (64%), Gaps = 5/302 (1%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQE 76 G HVPVLL ++ + P G+ LD TFGAGGY+R + G+ VI +DRDP A Q Sbjct: 10 GPHVPVLLRPLLKAVAPVSGR-WLDGTFGAGGYTRGLLEAGAEQVIGVDRDPLAFELAQP 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 DY ++ L + FS++ +Y D +DGVV DLGVSSMQ+D +RGFSF + GPLDMR Sbjct: 69 WAADYGDRLVLQEGVFSKMDEYAQD--LDGVVLDLGVSSMQLDLAERGFSFMRDGPLDMR 126 Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 MS SG SA+D+V + + L IL GEE+ + RIA +IVK R+ P TT L+ LI+ Sbjct: 127 MSQSGPSAADLVAELSEVQLADILFHFGEERASRRIAKSIVKTRELEPITTTLQLAKLIE 186 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 + +K + HPATRSFQALRI VN E EEL GL +AE+ALK GGLL VV+FHS+EDR Sbjct: 187 GCLPRAKPGKSHPATRSFQALRIAVNAEYEELFNGLLAAERALKPGGLLAVVTFHSVEDR 246 Query: 257 LVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 +VK+FF R+ K P A P+ F+ +T+K V P +++A N RSRSA+LR G Sbjct: 247 MVKRFFQHRANKTGRANRYAPEVAEIPSQFELVTRKAVGPDDDELAENPRSRSARLRVGR 306 Query: 316 RT 317 RT Sbjct: 307 RT 308 >gi|260462082|ref|ZP_05810326.1| S-adenosyl-methyltransferase MraW [Mesorhizobium opportunistum WSM2075] gi|259031942|gb|EEW33209.1| S-adenosyl-methyltransferase MraW [Mesorhizobium opportunistum WSM2075] Length = 338 Score = 278 bits (710), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 155/328 (47%), Positives = 216/328 (65%), Gaps = 7/328 (2%) Query: 15 HTIGD---HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAV 71 H +G H+PVLL +V+ L PA G +I+D TFGAGGY+++ G++V+A+DRDP A+ Sbjct: 10 HAVGGPARHIPVLLGEVLEALAPAEGDIIIDGTFGAGGYTKAILATGASVVAIDRDPDAI 69 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + G++ + L QA FS L ++ + VDGVV D+GVSSMQ+D +RGFSF+ G Sbjct: 70 AAGRDLEAQSGGRLRLVQAPFSTLDEHA--ESVDGVVLDIGVSSMQLDQAERGFSFRNDG 127 Query: 132 PLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 PLDMRM+ +G+SA+DVVN DL RI G LGEE+ A RIA I RR+ PF+ T +L Sbjct: 128 PLDMRMAQAGLSAADVVNSFKPGDLARIFGFLGEERHAGRIARMIEARREKRPFERTLEL 187 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + I+ + + ++IHPATR FQALRIFVN+E+ ELA+ L +AE+ALK GG L+VV+FH Sbjct: 188 ADAIETHIGRAPKDKIHPATRVFQALRIFVNDELGELAKALFAAERALKPGGRLVVVTFH 247 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+VK+F A R+ RH+ + A A F+ V P ++A N R+RSA+L Sbjct: 248 SLEDRIVKRFIADRADTASGSRHLPEAQARSATFRK-DGGGVTPGDAEIAANPRARSARL 306 Query: 312 RAGMRTVERSIEDD-SFVHLPRLPTLSQ 338 RA +RT + D S LP+LP + + Sbjct: 307 RAAIRTEAPARPGDFSIFGLPKLPGVDR 334 >gi|255262076|ref|ZP_05341418.1| S-adenosyl-methyltransferase MraW [Thalassiobium sp. R2A62] gi|255104411|gb|EET47085.1| S-adenosyl-methyltransferase MraW [Thalassiobium sp. R2A62] Length = 326 Score = 277 bits (708), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 152/308 (49%), Positives = 199/308 (64%), Gaps = 8/308 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI-ALDRDPFAVSCGQETM 78 H+PVLL ++ P G+ LD TFGAGGY+R G++V+ +DRDP A + Sbjct: 13 HIPVLLRPLLVACAPVSGR-WLDGTFGAGGYTRGLIDDGADVVYGVDRDPLAFDMAAPWV 71 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138 +Y ++ L + TFS L Y D +DGVV DLGVSSMQ+D +RGFSF + GPLDMRMS Sbjct: 72 GEYGDKIKLVEGTFSALDTYADD--LDGVVLDLGVSSMQLDLAERGFSFMRDGPLDMRMS 129 Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198 SG SA+D+VN A+ L IL GEE+ + RIA AIVK R P TT +L+++I+ Sbjct: 130 QSGPSAADIVNNADETALANILYDFGEERASRRIARAIVKAR---PLNTTLELAAVIESC 186 Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258 + K N+ HPATRSFQA+RI VN+E ELA+GL +AE+ALK GGLL VVSFHS+EDR+V Sbjct: 187 LPRPKPNQSHPATRSFQAIRIAVNDEYGELAEGLMAAERALKPGGLLAVVSFHSVEDRMV 246 Query: 259 KKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 K+F R+GK R+ + A A F+ +T+K V P +++ N RSRSAKLR RT Sbjct: 247 KRFMQERAGKTGRGSRYAPETEAIEAAFEIVTRKAVGPDDDELQENPRSRSAKLRVARRT 306 Query: 318 VERSIEDD 325 S E D Sbjct: 307 DAPSGEID 314 >gi|328542958|ref|YP_004303067.1| ribosomal RNA small subunit methyltransferase H [polymorphum gilvum SL003B-26A1] gi|326412704|gb|ADZ69767.1| Ribosomal RNA small subunit methyltransferase H [Polymorphum gilvum SL003B-26A1] Length = 346 Score = 275 bits (703), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 142/289 (49%), Positives = 193/289 (66%), Gaps = 5/289 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 HVPVLL V+ L PA G+VI+D TFGAGGYSR+F + G+ VI +DRDP A++ GQ+ +R Sbjct: 19 HVPVLLSAVLDTLRPAEGEVIVDGTFGAGGYSRAFLEAGAAVIGVDRDPDAIAGGQDLVR 78 Query: 80 DYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + L F+ L + G VDGVV DLGVSSMQID +RGFSF + GPLDMR Sbjct: 79 ASGGRLVLVPGRFADLDAHARACGHEAVDGVVLDLGVSSMQIDQAERGFSFMRDGPLDMR 138 Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 M +G SA+DVVN +DLTRI+G+LGEEK+A+ +A AI + R PF T +L+ L++ Sbjct: 139 MEQAGPSAADVVNTLPARDLTRIIGLLGEEKRAAAVARAISEARAEKPFTRTGELADLVE 198 Query: 197 KTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + V + K IHPATR+FQALRI+VN E+ + A+ L +AE+ L+ GG L+VVSFHSLED Sbjct: 199 RVVGRAPKKAHIHPATRTFQALRIYVNGELHQAAEALTAAERILRPGGRLVVVSFHSLED 258 Query: 256 RLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 R+VK+F A R+ + RH+ + PA F+ + K V + + + N Sbjct: 259 RIVKRFLADRTRVRAGGSRHLPEAEVPPATFELLVKGAVEADEAETSAN 307 >gi|319782840|ref|YP_004142316.1| S-adenosyl-methyltransferase MraW [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317168728|gb|ADV12266.1| S-adenosyl-methyltransferase MraW [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 344 Score = 275 bits (703), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 157/328 (47%), Positives = 215/328 (65%), Gaps = 7/328 (2%) Query: 15 HTIGD---HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAV 71 H +G H+PVLL +V+ L PA G +I+D TFGAGGY+R+ G++V+A+DRDP A+ Sbjct: 16 HAVGGSARHIPVLLAEVLEALVPAQGDLIIDGTFGAGGYTRAILATGASVVAIDRDPDAI 75 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + G++ + L QA FS L ++V + DG+V D+GVSSMQ+D +RGFSF+ G Sbjct: 76 AAGRDLEVQSGGRLRLVQAPFSTLDEHV--ESADGIVLDIGVSSMQLDQAERGFSFRADG 133 Query: 132 PLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 PLDMRM+ SG+SA+DVVN DL RI G LGEE+ A RIA I RR+ PF+ T +L Sbjct: 134 PLDMRMAQSGLSAADVVNSFKPGDLARIFGFLGEERHAGRIARMIEARREKRPFERTLEL 193 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + I+ + + ++IHPATR FQALRIFVN+E+ ELA+ L +AE+ALK GG L VV+FH Sbjct: 194 ADAIETHIGRAPKDKIHPATRVFQALRIFVNDELGELAKALFAAERALKPGGRLAVVTFH 253 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+VK+F A R+ RH+ ++A A F+ V E VA N R+RSA+L Sbjct: 254 SLEDRIVKRFIADRADVATGSRHLPEAHARTATFRKAGGGVTAGDAE-VAANPRARSARL 312 Query: 312 RAGMRTVERSIEDD-SFVHLPRLPTLSQ 338 RA +RT + D S LP+LP + + Sbjct: 313 RAAVRTQAPARGSDFSIFGLPKLPGIDR 340 >gi|99081855|ref|YP_614009.1| methyltransferase [Ruegeria sp. TM1040] gi|123378785|sp|Q1GF19|RSMH_SILST RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|99038135|gb|ABF64747.1| methyltransferase [Ruegeria sp. TM1040] Length = 329 Score = 275 bits (703), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 147/308 (47%), Positives = 197/308 (63%), Gaps = 5/308 (1%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQE 76 G H+PVLL+ ++A + P G+ LD TFGAGGY++ G++ VI +DRDP A Q Sbjct: 10 GPHIPVLLKPLLAAVAPVTGR-WLDGTFGAGGYTKGLLAAGADQVIGVDRDPLAFEMAQP 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 +Y ++ L Q FS++ +Y + +DGVV DLGVSSMQ+D +RGFSF K GPLDMR Sbjct: 69 WAAEYGDRLVLQQGVFSRMDEYAQE--LDGVVLDLGVSSMQLDLAERGFSFMKEGPLDMR 126 Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 MS G SA+D+V + + L +L GEE+ + RIA AIVK R P TT L+ +I+ Sbjct: 127 MSQDGPSAADLVAELSEVQLADVLYSFGEERASRRIAKAIVKERAQEPITTTLRLAEIIE 186 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 + K + HPATRSFQALRI VN E EEL GL +AE+ALK GGLL VV+FHS+EDR Sbjct: 187 GCLPRPKPGQSHPATRSFQALRIAVNGEYEELMGGLLAAERALKPGGLLAVVTFHSVEDR 246 Query: 257 LVKKFFASRSGKVMAVRHMIPS-NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 +VK+FF R+ K P+ P+ F+ +T+K V P ++++A N RSRSA LR G Sbjct: 247 MVKRFFQHRANKTGNANRYAPAMEEQPSQFELVTRKAVGPDKDELAQNPRSRSALLRVGR 306 Query: 316 RTVERSIE 323 RT +E Sbjct: 307 RTDAAPVE 314 >gi|259416349|ref|ZP_05740269.1| S-adenosyl-methyltransferase MraW [Silicibacter sp. TrichCH4B] gi|259347788|gb|EEW59565.1| S-adenosyl-methyltransferase MraW [Silicibacter sp. TrichCH4B] Length = 329 Score = 274 bits (700), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 148/308 (48%), Positives = 194/308 (62%), Gaps = 5/308 (1%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQE 76 G HVPVLL+ ++ + P G+ LD TFGAGGY++ G+ VI +DRDP A Q+ Sbjct: 10 GPHVPVLLKPLLEAVAPVTGR-WLDGTFGAGGYTKGLLAAGAEQVIGVDRDPLAFEMAQD 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 +Y + L Q FS++ +Y D +DGVV DLGVSSMQ+D +RGFSF K GPLDMR Sbjct: 69 WAEEYGARLVLQQGVFSRMDEYASD--LDGVVLDLGVSSMQLDLAERGFSFMKDGPLDMR 126 Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 MS G SA+D+V + L IL GEE+ + RIA AIV+ R P TT L+ +I+ Sbjct: 127 MSQDGSSAADLVAELTEVQLADILYSFGEERASRRIAKAIVRERALEPITTTLRLAEIIE 186 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 + K + HPATRSFQALRI VN E EEL GL +AE+ALK GGLL VV+FHS+EDR Sbjct: 187 SCLPRPKPGQSHPATRSFQALRIAVNGEYEELMGGLLAAERALKPGGLLAVVTFHSVEDR 246 Query: 257 LVKKFFASRSGKVMAVRHMIPS-NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 +VK+FF R+ K P+ P+ F+ +T+K V P ++++A N RSRSA LR G Sbjct: 247 MVKRFFQHRANKTGNANRFAPAMEEQPSQFELVTRKAVGPDKDELAQNPRSRSALLRVGR 306 Query: 316 RTVERSIE 323 RT +E Sbjct: 307 RTDAAPVE 314 >gi|114763021|ref|ZP_01442451.1| S-adenosyl-methyltransferase MraW [Pelagibaca bermudensis HTCC2601] gi|114544345|gb|EAU47353.1| S-adenosyl-methyltransferase MraW [Roseovarius sp. HTCC2601] Length = 330 Score = 273 bits (697), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 143/300 (47%), Positives = 194/300 (64%), Gaps = 5/300 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETM 78 HVPVLL ++ + P G + D TFGAGGY+R + G++ VI +DRDP A Q + Sbjct: 13 HVPVLLRPLLKAVAPVSGTWV-DGTFGAGGYARGLLEAGADKVIGIDRDPLAHQMAQAWI 71 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138 DY ++ L + F+ + + G DGVV DLGVSSMQ+D +RGFSF K GPLDMRM Sbjct: 72 GDYGDRLELVEGNFADMDKVI--SGADGVVLDLGVSSMQLDIAERGFSFMKDGPLDMRME 129 Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198 SG SA+D+V + + L +L GEE+ + RIA AIVK R P +TT LSS+++ Sbjct: 130 QSGESAADLVKRLDETALADVLYTYGEERASRRIARAIVKARDQEPIETTARLSSIVEAC 189 Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258 + K + HPATRSFQALRI VN+E L +GL +AE+ALK GG L VV+FHS+EDR+V Sbjct: 190 LPRPKPGQSHPATRSFQALRIAVNDEYGALWRGLMAAERALKPGGWLCVVTFHSVEDRMV 249 Query: 259 KKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 K+FF +R+G++ V RH + F+ +T+K V P E++A N R+RSA+LR G RT Sbjct: 250 KRFFQARTGRLDTVSRHAPVTETEAPRFELLTRKAVGPDDEELAANPRARSARLRIGKRT 309 >gi|260428345|ref|ZP_05782324.1| S-adenosyl-methyltransferase MraW [Citreicella sp. SE45] gi|260422837|gb|EEX16088.1| S-adenosyl-methyltransferase MraW [Citreicella sp. SE45] Length = 330 Score = 272 bits (695), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 143/300 (47%), Positives = 194/300 (64%), Gaps = 5/300 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETM 78 HVPVLL ++ + P G + D TFGAGGYSR + G++ VI +DRDP A E + Sbjct: 13 HVPVLLRPLLDAVAPVSGTWV-DGTFGAGGYSRGLLEAGADRVIGIDRDPLAHRMAAEWI 71 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138 Y + L + F+ + YV G DGVV DLGVSSMQ+D +RGFSFQ+ GPLDMRM Sbjct: 72 GSYGGRLELVEGNFADMDQYV--SGADGVVLDLGVSSMQLDIAERGFSFQRDGPLDMRME 129 Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198 +G SA+++V + + L +L GEE+ + RIA AIVK R+ P +TT LS++++ Sbjct: 130 QAGESAAELVKRLDETTLADVLYTYGEERASRRIARAIVKAREQEPIETTARLSAIVEAC 189 Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258 + K + HPATRSFQALRI VN+E L +GL +AEKALK GG L VV+FHS+EDR+V Sbjct: 190 LPRPKPGQSHPATRSFQALRIAVNDEYGALWRGLMAAEKALKPGGFLCVVTFHSVEDRMV 249 Query: 259 KKFFASRSGKVMAVRHMIP-SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 K+F +RSG++ AV P A F ++T+K + P +++A N RSRSA+LR G RT Sbjct: 250 KRFLQARSGRLGAVSRYAPVVEAEEPQFVTMTRKAIGPDDDELAANPRSRSARLRIGQRT 309 >gi|13471557|ref|NP_103123.1| S-adenosyl-methyltransferase MraW [Mesorhizobium loti MAFF303099] gi|20139098|sp|Q98KA5|RSMH_RHILO RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|14022299|dbj|BAB48909.1| mll1565 [Mesorhizobium loti MAFF303099] Length = 338 Score = 271 bits (694), Expect = 8e-71, Method: Compositional matrix adjust. Identities = 146/327 (44%), Positives = 202/327 (61%), Gaps = 5/327 (1%) Query: 15 HTIGD---HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAV 71 H +G H+PVLL +V+ L PA +I+D TFGAGGY+R+ G++V+A+DRDP A+ Sbjct: 10 HAVGGSVRHIPVLLGEVLEALAPAERDIIIDGTFGAGGYTRAILATGASVVAIDRDPDAI 69 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + G++ + L QA FS L ++V + DGVV D+GVSSMQ+D +RGFSF+ G Sbjct: 70 AAGRDLEVQSGGRLRLVQAPFSTLDEHV--ESADGVVLDIGVSSMQLDQAERGFSFRFDG 127 Query: 132 PLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 PLDMRM+ +G+SA+DVVN DL RI G LGEE+ A RIA I RR+ PF+ T +L Sbjct: 128 PLDMRMAQAGLSAADVVNSFKPGDLARIFGFLGEERHAGRIARMIEARREKKPFEGTLEL 187 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + I+ + + ++IHPATR FQALRI+VN+E+ ELA+ L +AE+ALK GG L+VV+FH Sbjct: 188 ADAIETHIGRAPKDKIHPATRVFQALRIYVNDELGELAKALFAAERALKPGGRLVVVTFH 247 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+VK+F A R+ RH+ + A A F+ V E A R + Sbjct: 248 SLEDRIVKRFIADRADVATGSRHLPEAQARTATFRKAGGGVTAGDAEVAANPRARSARLR 307 Query: 312 RAGMRTVERSIEDDSFVHLPRLPTLSQ 338 A D S LP+LP + + Sbjct: 308 AAIRTEAPARAGDFSIFGLPKLPGIDR 334 >gi|163746120|ref|ZP_02153479.1| S-adenosyl-methyltransferase MraW [Oceanibulbus indolifex HEL-45] gi|161380865|gb|EDQ05275.1| S-adenosyl-methyltransferase MraW [Oceanibulbus indolifex HEL-45] Length = 327 Score = 271 bits (694), Expect = 8e-71, Method: Compositional matrix adjust. Identities = 149/309 (48%), Positives = 199/309 (64%), Gaps = 5/309 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78 H PVLL ++ + P G V LD TFGAGGY+R F + G+ VIA+DRDP A E Sbjct: 11 HTPVLLRPILTAVAPVEG-VWLDGTFGAGGYTRGFLEAGAARVIAVDRDPLAFEMAAEWA 69 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138 D+ ++ ++ Q FS++ +Y D +DGVV DLGVSSMQ+D +RGFSF K GPLDMRMS Sbjct: 70 GDFGDRITMQQGVFSRMDEYAQD--LDGVVLDLGVSSMQLDQAERGFSFMKDGPLDMRMS 127 Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198 G SA+D+VN+A + + IL GEE+ + RIA +IV+ R+ AP TT +L+ L++ Sbjct: 128 QDGPSAADLVNEAEEEIIANILFQYGEERASRRIAKSIVRAREVAPITTTLELAKLVEGC 187 Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258 + SK + HPATRSFQALRI VNNE EL QGL +AE+ALK GG L VV+FHS+EDR+V Sbjct: 188 LPRSKPGQSHPATRSFQALRIAVNNEYGELFQGLMAAERALKPGGKLAVVTFHSVEDRMV 247 Query: 259 KKFFASRSGKVMAVRHMIPSNAHPAV-FQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 K+F +R+G P+ A F ++K + P +++ N RSRSAKLR RT Sbjct: 248 KRFLTARAGAGGNANRFAPALEQEAPQFTLKSRKAIGPDAQELDENPRSRSAKLRVATRT 307 Query: 318 VERSIEDDS 326 S E D+ Sbjct: 308 DAPSGEIDA 316 >gi|146276735|ref|YP_001166894.1| S-adenosyl-methyltransferase MraW [Rhodobacter sphaeroides ATCC 17025] gi|262825577|sp|A4WQC5|RSMH_RHOS5 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|145554976|gb|ABP69589.1| S-adenosyl-methyltransferase MraW [Rhodobacter sphaeroides ATCC 17025] Length = 331 Score = 271 bits (693), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 146/300 (48%), Positives = 197/300 (65%), Gaps = 4/300 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETM 78 H+PVLL ++A + P G V LD TFGAGGY+R + G++ VI +DRDP A+ Q+ Sbjct: 11 HIPVLLRPLLAAVAPVSG-VWLDGTFGAGGYARGLLEAGADRVIGVDRDPLALEMAQDWA 69 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138 Y ++ L TFSQL D + +DGVV DLGVSSMQ+D DRGFSFQK GPLDMRMS Sbjct: 70 GAYGDRLRLVAGTFSQL-DVHAGEPLDGVVLDLGVSSMQLDQADRGFSFQKDGPLDMRMS 128 Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198 G SA+D+VN+A+ + L IL GEE+ + RIA AIV+ R + P T L+ ++ + Sbjct: 129 QQGESAADLVNEASEETLADILYHYGEERASRRIARAIVEARAAGPITRTLHLAEIVARC 188 Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258 + K ++HPATRSFQA+RI VN E EL +GL +AE+ALK GG L VV+FHSLEDR+V Sbjct: 189 LPRPKPGQMHPATRSFQAIRIAVNAEFSELVEGLEAAERALKPGGRLAVVTFHSLEDRIV 248 Query: 259 KKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 K+F RS G+ R+ + A A F ++ + P + ++A N R+RSA+LR G+RT Sbjct: 249 KRFLQLRSGGEGQGNRYAPETRAEAARFTLPLRRAISPDEAELADNPRARSARLRVGVRT 308 >gi|192292422|ref|YP_001993027.1| S-adenosyl-methyltransferase MraW [Rhodopseudomonas palustris TIE-1] gi|262825558|sp|B3QFN9|RSMH_RHOPT RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|192286171|gb|ACF02552.1| S-adenosyl-methyltransferase MraW [Rhodopseudomonas palustris TIE-1] Length = 332 Score = 271 bits (693), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 154/323 (47%), Positives = 200/323 (61%), Gaps = 10/323 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETM 78 H+PVL + + LL P G + +D TFGAGGY+R + GS VIA+DRDP A++ G + + Sbjct: 8 HIPVLGPEAVGLLAPRAGGIYVDGTFGAGGYTRLILETAGSRVIAIDRDPTAIAGGADLV 67 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 D + +L Q FS L D +G VDGVV D+GVSSMQ+D +RGFSF+ GPLDM Sbjct: 68 ADAGHRLTLVQDRFSNLADVCAAQGAATVDGVVMDIGVSSMQLDQAERGFSFRFDGPLDM 127 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RM G SA+DVV +A+ DL I+ I GEE+ + +A AIV R AP TT+ L+ ++ Sbjct: 128 RMGRDGPSAADVVARASETDLANIIYIFGEERYSRHVARAIVAARSDAPITTTKALADIV 187 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 K V +K IHPATR+FQ LRIFVN E++EL Q L +AE+ LK GG L VVSFHSLED Sbjct: 188 AKVVR-AKPGEIHPATRTFQGLRIFVNEELDELHQALDAAERVLKPGGRLAVVSFHSLED 246 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPA-VFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 R+VK F RS RH+ P A A F ++K+ +V +VA N R+RSAKLR Sbjct: 247 RIVKTFLTERSKTGGGSRHL-PEVAQAAPSFTLLSKRPIVAGDAEVAANPRARSAKLRGA 305 Query: 315 MRTVERSIEDDSFVHLPRLPTLS 337 RT + LP PTL+ Sbjct: 306 ERT---EAPAHAAGDLPGWPTLA 325 >gi|84516398|ref|ZP_01003757.1| S-adenosyl-methyltransferase MraW [Loktanella vestfoldensis SKA53] gi|84509434|gb|EAQ05892.1| S-adenosyl-methyltransferase MraW [Loktanella vestfoldensis SKA53] Length = 326 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 149/312 (47%), Positives = 199/312 (63%), Gaps = 12/312 (3%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRD 67 MS+A T H+PVL+ +IA + P G V LD TFG GGY+R+ G++ VIA+DRD Sbjct: 1 MSAAADQT--PHIPVLIRPLIAAVGPVTG-VWLDGTFGNGGYTRALLAAGAHKVIAVDRD 57 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 P A + DY ++ + + FSQL Y D +DGVV DLGVSSMQ+D +RGFSF Sbjct: 58 PLAFQMAAGWVADYGDRIVMQEGVFSQLDTYAQD--LDGVVLDLGVSSMQLDLAERGFSF 115 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRMS SG+SA+D+ N A +L I+ + GEE+ + RIA AIV R P T Sbjct: 116 MRDGPLDMRMSQSGLSAADLCNDAEEAELADIIYLYGEERASRRIAKAIVAAR---PLTT 172 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T L+ +++ + +K N+ HPATR+FQALRI VNNE ELA GL +AE+ALK GG L V Sbjct: 173 TGQLAKIVESCLPRAKPNQSHPATRTFQALRIAVNNEYGELAMGLMAAERALKPGGQLAV 232 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH--PAVFQSITKKVVVPTQEDVAFNRR 305 V+FHS+EDR+ K+F +RSG P PA F+ +K + P ++++A N R Sbjct: 233 VTFHSVEDRMAKRFLQARSGNNANANRYAPETTQVTPA-FRIDKRKAIGPDEQELAENPR 291 Query: 306 SRSAKLRAGMRT 317 SRSAKLR +RT Sbjct: 292 SRSAKLRVAIRT 303 >gi|83942761|ref|ZP_00955222.1| S-adenosyl-methyltransferase MraW [Sulfitobacter sp. EE-36] gi|83846854|gb|EAP84730.1| S-adenosyl-methyltransferase MraW [Sulfitobacter sp. EE-36] Length = 330 Score = 270 bits (691), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 143/300 (47%), Positives = 192/300 (64%), Gaps = 5/300 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78 H PVLL ++A + P G+ LD TFGAGGY+R G+ V+A+DRDP A Q Sbjct: 12 HTPVLLRPLLAAVAPVSGR-WLDGTFGAGGYTRGLLDAGAAQVVAVDRDPLAFEMAQAWA 70 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138 DY ++ + + FS++ DY D +DG+V DLGVSSMQ+D +RGFSF + GPLDMRMS Sbjct: 71 GDYGDRIVMQRGVFSKMDDYAQD--LDGIVLDLGVSSMQLDLAERGFSFMRDGPLDMRMS 128 Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198 G SA+D+VN+A + + IL GEE+ + RIA AIV+ R+ AP TT L+ L++ Sbjct: 129 QDGPSAADIVNEAEEEVIANILFQYGEERASRRIAKAIVRAREEAPITTTLALAGLVESC 188 Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258 + SK + HPATRSFQALRI VNNE EL GL +AE+ALK GG L VV+FHS+EDR+V Sbjct: 189 LPRSKPGQSHPATRSFQALRIAVNNEYGELFNGLMAAERALKPGGQLAVVTFHSVEDRMV 248 Query: 259 KKFFASRSGKVMAVRHMIPSNAHPAV-FQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 K+F +R+G P P F+ + +K + P +++ N RSRSAKLR +RT Sbjct: 249 KRFLTARAGAGGNANRFAPEIEAPEPQFKILKRKAIGPDAQELEENPRSRSAKLRVAIRT 308 >gi|312112902|ref|YP_004010498.1| S-adenosyl-methyltransferase MraW [Rhodomicrobium vannielii ATCC 17100] gi|311218031|gb|ADP69399.1| S-adenosyl-methyltransferase MraW [Rhodomicrobium vannielii ATCC 17100] Length = 340 Score = 270 bits (691), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 144/306 (47%), Positives = 201/306 (65%), Gaps = 10/306 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVS--CGQE 76 H+PVLL +V+ L+P G+ +D TFGAGGY+R+ + +V+ LDRDP A++ C E Sbjct: 31 HIPVLLREVLEALHPGVGERFIDGTFGAGGYARAILEAAHCDVLGLDRDPTAIAGACALE 90 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 T + + L + FS+++D G +DGVV DLGVSSMQ+D +RGFSF + GPL Sbjct: 91 TA--FAGRLKLAETPFSEMEDAAHGIGWDALDGVVLDLGVSSMQLDEAERGFSFMRDGPL 148 Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 DMRMS SG+SA+DVVN + IL GEE+++ IA AIVK R++APF+ T L++ Sbjct: 149 DMRMSSSGLSAADVVNTYEKDAIADILYTFGEERRSRAIAAAIVKDRETAPFERTGQLAA 208 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 LI + + + HPATRSFQALR++VN+E+ EL + L +AE+ LK GG L+VVSFHSL Sbjct: 209 LIARVLGHKPGDPKHPATRSFQALRLYVNDELGELTRALEAAERLLKPGGRLVVVSFHSL 268 Query: 254 EDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 EDR+VK+F A RSGK IP ++ F+ + V P +++VA N R+RSA+L Sbjct: 269 EDRIVKRFLAERSGKRAKASRYIPDAGDSTAPTFELRDRHGVEPGEDEVAANPRARSARL 328 Query: 312 RAGMRT 317 R +RT Sbjct: 329 RWAVRT 334 >gi|83954000|ref|ZP_00962721.1| S-adenosyl-methyltransferase MraW [Sulfitobacter sp. NAS-14.1] gi|83841945|gb|EAP81114.1| S-adenosyl-methyltransferase MraW [Sulfitobacter sp. NAS-14.1] Length = 333 Score = 270 bits (691), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 143/300 (47%), Positives = 192/300 (64%), Gaps = 5/300 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78 H PVLL ++A + P G+ LD TFGAGGY+R G+ V+A+DRDP A Q Sbjct: 15 HTPVLLRPLLAAVAPVSGR-WLDGTFGAGGYTRGLLDAGAAQVVAVDRDPLAFEMAQAWA 73 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138 DY ++ + + FS++ DY D +DG+V DLGVSSMQ+D +RGFSF + GPLDMRMS Sbjct: 74 GDYGDRIVMQRGVFSKMDDYAQD--LDGIVLDLGVSSMQLDLAERGFSFMRDGPLDMRMS 131 Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198 G SA+D+VN+A + + IL GEE+ + RIA AIV+ R+ AP TT L+ L++ Sbjct: 132 QDGPSAADIVNEAEEEVIANILFQYGEERASRRIAKAIVRAREEAPITTTLALAGLVEGC 191 Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258 + SK + HPATRSFQALRI VNNE EL GL +AE+ALK GG L VV+FHS+EDR+V Sbjct: 192 LPRSKPGQSHPATRSFQALRIAVNNEYGELFNGLMAAERALKPGGQLAVVTFHSVEDRMV 251 Query: 259 KKFFASRSGKVMAVRHMIPSNAHPAV-FQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 K+F +R+G P P F+ + +K + P +++ N RSRSAKLR +RT Sbjct: 252 KRFLTARAGAGGNANRFAPEIEAPEPQFKILKRKAIGPDAQELEENPRSRSAKLRVAIRT 311 >gi|254486962|ref|ZP_05100167.1| S-adenosyl-methyltransferase MraW [Roseobacter sp. GAI101] gi|214043831|gb|EEB84469.1| S-adenosyl-methyltransferase MraW [Roseobacter sp. GAI101] Length = 330 Score = 270 bits (690), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 144/311 (46%), Positives = 198/311 (63%), Gaps = 5/311 (1%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRD 67 M++A H PVLL ++A + P G+ LD TFGAGGY+R G++ VIA+DRD Sbjct: 1 MTAASDTPSAPHTPVLLRPLLAAVAPVYGR-WLDGTFGAGGYTRGLLDAGADQVIAVDRD 59 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 P A +Y ++ + Q FS++ +Y + +DGVV DLGVSSMQ+D +RGFSF Sbjct: 60 PLAFEMAASWAGEYGDRLIMQQGVFSRMDEYA--QNLDGVVLDLGVSSMQLDLAERGFSF 117 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRMS G SA+D+VN+A + + IL GEE+ + RIA AIV++R+ AP T Sbjct: 118 MRDGPLDMRMSQEGPSAADIVNEAEEEIIANILFQFGEERASRRIAKAIVRQREEAPITT 177 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T +L+ L++ + SK + HPATRSFQALRI VNNE EL +GL +AE+ALK GG L V Sbjct: 178 TLELARLVESCLPRSKPGQSHPATRSFQALRIAVNNEYGELFEGLMAAERALKPGGQLAV 237 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPS-NAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+FHS+EDR+VK+F +R+G P + P F +K + P +++ N RS Sbjct: 238 VTFHSVEDRMVKRFLTARAGAGGNANRFAPEMESEPPQFIVKKRKAIGPDAQELEENPRS 297 Query: 307 RSAKLRAGMRT 317 RSAKLR +RT Sbjct: 298 RSAKLRVAIRT 308 >gi|149201994|ref|ZP_01878968.1| S-adenosyl-methyltransferase MraW [Roseovarius sp. TM1035] gi|149145042|gb|EDM33071.1| S-adenosyl-methyltransferase MraW [Roseovarius sp. TM1035] Length = 330 Score = 270 bits (690), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 147/300 (49%), Positives = 190/300 (63%), Gaps = 5/300 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETM 78 H+PVLL +IA + P G V LD T GAGGY+R+ G++ VI +DRDP A Q Sbjct: 13 HIPVLLRPLIAAVAPVQG-VWLDGTLGAGGYARALLDAGADQVIGVDRDPLAHDMAQGWG 71 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138 +Y ++ L F+Q+ DY D +DGVV DLGVSSMQ+D +RGFSF K GPLDMRMS Sbjct: 72 AEYGDRLRLVLGNFAQMDDYATD--LDGVVLDLGVSSMQLDLAERGFSFMKDGPLDMRMS 129 Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198 G SA+D+VN A DL IL + GEE+ + RIA AIVK R AP +TT L+ LI++ Sbjct: 130 QEGPSAADLVNTAEESDLADILYLYGEERASRRIARAIVKARTEAPIETTLHLAGLIERC 189 Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258 + SK + H ATRSFQA+RI VN+E L GL +AE+ALK GG L VV+FHS+EDR+V Sbjct: 190 LPRSKPGQAHAATRSFQAIRIAVNDEYGALIAGLEAAERALKEGGQLAVVTFHSIEDRIV 249 Query: 259 KKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 K+F +RSG RH F ++K + P E++A N R+RSA+LR RT Sbjct: 250 KRFLTARSGGGGTGSRHAPEITREEPQFTLKSRKAIGPDDEELAVNPRARSARLRVATRT 309 >gi|294085909|ref|YP_003552669.1| S-adenosyl-methyltransferase MraW [Candidatus Puniceispirillum marinum IMCC1322] gi|292665484|gb|ADE40585.1| S-adenosyl-methyltransferase MraW [Candidatus Puniceispirillum marinum IMCC1322] Length = 334 Score = 269 bits (687), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 149/315 (47%), Positives = 192/315 (60%), Gaps = 17/315 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78 H VLL +V+ L P GKV LDATFG GGYSR+ VIA+DRDP A++ GQ+ + Sbjct: 7 HQSVLLNEVVDALRPTNGKVYLDATFGNGGYSRALLDAADCTVIAIDRDPDAIARGQKMV 66 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGV---------------DGVVFDLGVSSMQIDCGDR 123 +YK +F+L + FS++Q V V DG FDLGV S Q+D DR Sbjct: 67 AEYKPRFTLVEGCFSEMQSLVQSALVSTGSGSTSHADVPVLDGAAFDLGVCSTQLDQADR 126 Query: 124 GFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 GFSF++ GPLDMRMS SGISA+D+V D+ +IL GEEK + RIA AIVK R Sbjct: 127 GFSFRQDGPLDMRMSQSGISAADIVMTHEEHDIAQILWEYGEEKASRRIAKAIVKARSET 186 Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 +T L+++I + + +I PATRSFQALRI+VN E++EL L ++E LK GG Sbjct: 187 AISSTSQLAAIIHSVMPAKRPGQIDPATRSFQALRIYVNRELDELKSALTTSEAMLKPGG 246 Query: 244 LLIVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 +L VVSFHSLEDR+VK+F ASRS RH PSN F+ +T+K + + Sbjct: 247 ILAVVSFHSLEDRIVKRFLASRSQIASQPSRHRPPSNGPAPTFELLTRKALQAGTRERED 306 Query: 303 NRRSRSAKLRAGMRT 317 N R+RSAKLR MRT Sbjct: 307 NSRARSAKLRVAMRT 321 >gi|295688554|ref|YP_003592247.1| S-adenosyl-methyltransferase MraW [Caulobacter segnis ATCC 21756] gi|295430457|gb|ADG09629.1| S-adenosyl-methyltransferase MraW [Caulobacter segnis ATCC 21756] Length = 311 Score = 268 bits (686), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 146/306 (47%), Positives = 205/306 (66%), Gaps = 17/306 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+ VLL++V+ L PG V++D TFGAGGY+R+ G++VI DRDP T++ Sbjct: 6 HISVLLDEVVEALGAGPGDVVVDGTFGAGGYTRAVLATGASVIGFDRDP--------TVQ 57 Query: 80 DYKE-----QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + E +F L QA FS++ D + + VDGV+ DLGVSSMQ+D +RGFSF + GPLD Sbjct: 58 RFTEGLPADRFRLIQARFSEMLDELGPESVDGVMLDLGVSSMQLDQAERGFSFMRDGPLD 117 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRM +G +A+D+VN + +L RIL + GEE + RIA I++RR+ PF+ T DL+ + Sbjct: 118 MRMGDTGPTAADLVNTLDHAELARILYVYGEEHASRRIASFILRRREERPFERTLDLAEV 177 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 I++ V K ++HPATRSFQ LRI VN+E+ EL GL +AE+ LK GG L+VV+FHSLE Sbjct: 178 IERAVGGRKGAKVHPATRSFQGLRIAVNDELGELEAGLAAAERVLKPGGRLVVVTFHSLE 237 Query: 255 DRLVKKFFASRSGKV-MAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 DR+VK F A R+G+ RH P + A P+ FQ I+ K + P + ++A N R+RS+KL Sbjct: 238 DRIVKAFLAERAGRTPGGSRHAPPVQAGAQPS-FQLISNKAIAPGEAELAANPRARSSKL 296 Query: 312 RAGMRT 317 RA +RT Sbjct: 297 RAAVRT 302 >gi|158426170|ref|YP_001527462.1| S-adenosyl-methyltransferase MraW [Azorhizobium caulinodans ORS 571] gi|263446764|sp|A8HZ68|RSMH_AZOC5 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|158333059|dbj|BAF90544.1| methyltransferase [Azorhizobium caulinodans ORS 571] Length = 346 Score = 268 bits (686), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 149/327 (45%), Positives = 202/327 (61%), Gaps = 8/327 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETM 78 H+PV+L +V+A L P LD TFGAGGY+R+ + + VIA+DRDP A++ GQ + Sbjct: 19 HLPVMLAEVLAHLAPKDAGTCLDGTFGAGGYTRAILEAANGRVIAIDRDPTAIAGGQALV 78 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + + +L FS L D G +DGVV D+GVSSMQ+D DRGFSF++ GPLDM Sbjct: 79 EETGGRLTLVHERFSHLDQVAQDLGAAPLDGVVLDIGVSSMQLDEADRGFSFRRDGPLDM 138 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RM+ G SA+D+V + +L ++ LGEE+ + +IA AIV R +P T L+ ++ Sbjct: 139 RMANDGPSAADLVADLDEVELAHVIWTLGEERFSRQIARAIVNARAESPITRTTQLADIV 198 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 K V+ +K +HPATR+FQALRI VN E++EL L +AE+ LK GG L+VV+FHSLED Sbjct: 199 SKVVW-AKPGEMHPATRTFQALRIAVNEELQELVGALAAAERVLKPGGRLVVVTFHSLED 257 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 R+VK F + RS A RHM + F+ + K V P ++VA N R+RSAKLRA Sbjct: 258 RIVKNFLSHRSKAPSASRHMPQAEGPAPSFRLVAKGAVEPGSDEVAGNPRARSAKLRAAE 317 Query: 316 RTVERSIEDDSFVHLPRLPT-LSQFRG 341 RT + D L LP LSQ RG Sbjct: 318 RTDAPAHPDGDLAGL--LPADLSQRRG 342 >gi|302383891|ref|YP_003819714.1| S-adenosyl-methyltransferase MraW [Brevundimonas subvibrioides ATCC 15264] gi|302194519|gb|ADL02091.1| S-adenosyl-methyltransferase MraW [Brevundimonas subvibrioides ATCC 15264] Length = 317 Score = 268 bits (685), Expect = 9e-70, Method: Compositional matrix adjust. Identities = 146/309 (47%), Positives = 190/309 (61%), Gaps = 17/309 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H PVLL +V+ L P G VI+DATFGAGGY+R+ G+ VIALDRDP Sbjct: 6 HAPVLLAEVLEALAPKAGDVIIDATFGAGGYTRAILATGATVIALDRDPTVQPHADAVAN 65 Query: 80 DYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 D+ +F+L + FS L D D G +DG+VFD+GVSSMQ+D +RGFSF + GPLDMR Sbjct: 66 DHPGRFTLVRTPFSGLADAFADSGAARLDGIVFDIGVSSMQLDEAERGFSFMRDGPLDMR 125 Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 MS G SA+D+VN + L IL G+E+Q+ RIA AI++RR PF T DL+ +++ Sbjct: 126 MSRDGDSAADIVNTWDHGPLAHILKQYGDERQSGRIATAILRRRTVQPFTRTLDLADVVE 185 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 + + + HPATR+FQALRI VN+E+ EL GL++AE AL GG L VV+FHSLEDR Sbjct: 186 RALGGRRGAPTHPATRTFQALRIAVNDELGELTAGLQAAEAALSPGGRLAVVTFHSLEDR 245 Query: 257 LVKKFFASRSGKV--------MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 +VK F R+G MAV PS F K + ++A N R+RS Sbjct: 246 IVKAFLTERTGNAPGGSRHAPMAVETRKPS------FTLSFKGAREAGEAELAANPRARS 299 Query: 309 AKLRAGMRT 317 AKLRA +RT Sbjct: 300 AKLRAAVRT 308 >gi|42558979|sp|Q89FT9|RSMH_BRAJA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 329 Score = 268 bits (685), Expect = 9e-70, Method: Compositional matrix adjust. Identities = 154/319 (48%), Positives = 203/319 (63%), Gaps = 7/319 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETM 78 H+PVL + I L P G + +DATFGAGGYSR+ + G+ +IA+DRD A++ G E + Sbjct: 6 HIPVLGREAIDHLAPREGGIYVDATFGAGGYSRAILDVPGTRLIAIDRDRTAIAGGAELV 65 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV---SSMQIDCGDRGFSFQKSGPLDM 135 + +L + FS L D +GVD V + SSMQ+D RGFSF+ GPLDM Sbjct: 66 ERSAGRLTLVEDRFSHLADVCAAQGVDAVDGVVMDVGVSSMQLDQAGRGFSFRLDGPLDM 125 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RM +G +A+DVV +A+ DL I+ +LGEE+ + R+A AIV RQ PF TT+ L+ L+ Sbjct: 126 RMGQAGPTAADVVARASEADLADIIYLLGEERHSRRVARAIVADRQETPFTTTRALADLV 185 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + V SK IHPATR+FQALRIFVN E+EEL L +AE+ LK GG L+VVSFHSLED Sbjct: 186 GRVVR-SKPGDIHPATRTFQALRIFVNEELEELQTALTAAERVLKPGGRLVVVSFHSLED 244 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPA-VFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 R+VK F A RS RH+ P A A FQ +T++ VV +++VA N R+RSAKLRA Sbjct: 245 RIVKNFLAERSKTGGGSRHL-PEVAQTAPSFQLLTRRPVVAGEDEVAHNPRARSAKLRAA 303 Query: 315 MRTVERSIEDDSFVHLPRL 333 RT + +DD PRL Sbjct: 304 ERTSAPAHKDDQSSSWPRL 322 >gi|27381721|ref|NP_773250.1| S-adenosyl-methyltransferase MraW [Bradyrhizobium japonicum USDA 110] gi|27354890|dbj|BAC51875.1| S-adenosyl-methyltransferase [Bradyrhizobium japonicum USDA 110] Length = 387 Score = 268 bits (685), Expect = 9e-70, Method: Compositional matrix adjust. Identities = 154/319 (48%), Positives = 203/319 (63%), Gaps = 7/319 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETM 78 H+PVL + I L P G + +DATFGAGGYSR+ + G+ +IA+DRD A++ G E + Sbjct: 64 HIPVLGREAIDHLAPREGGIYVDATFGAGGYSRAILDVPGTRLIAIDRDRTAIAGGAELV 123 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV---SSMQIDCGDRGFSFQKSGPLDM 135 + +L + FS L D +GVD V + SSMQ+D RGFSF+ GPLDM Sbjct: 124 ERSAGRLTLVEDRFSHLADVCAAQGVDAVDGVVMDVGVSSMQLDQAGRGFSFRLDGPLDM 183 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RM +G +A+DVV +A+ DL I+ +LGEE+ + R+A AIV RQ PF TT+ L+ L+ Sbjct: 184 RMGQAGPTAADVVARASEADLADIIYLLGEERHSRRVARAIVADRQETPFTTTRALADLV 243 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + V SK IHPATR+FQALRIFVN E+EEL L +AE+ LK GG L+VVSFHSLED Sbjct: 244 GRVVR-SKPGDIHPATRTFQALRIFVNEELEELQTALTAAERVLKPGGRLVVVSFHSLED 302 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPA-VFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 R+VK F A RS RH+ P A A FQ +T++ VV +++VA N R+RSAKLRA Sbjct: 303 RIVKNFLAERSKTGGGSRHL-PEVAQTAPSFQLLTRRPVVAGEDEVAHNPRARSAKLRAA 361 Query: 315 MRTVERSIEDDSFVHLPRL 333 RT + +DD PRL Sbjct: 362 ERTSAPAHKDDQSSSWPRL 380 >gi|315498857|ref|YP_004087661.1| s-adenosyl-methyltransferase mraw [Asticcacaulis excentricus CB 48] gi|315416869|gb|ADU13510.1| S-adenosyl-methyltransferase MraW [Asticcacaulis excentricus CB 48] Length = 327 Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 134/303 (44%), Positives = 200/303 (66%), Gaps = 5/303 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+ VLL +VIA + P G++++D TFGAGGY+R+F G+ VIA DRD + Sbjct: 6 HISVLLNEVIAAVAPESGRLVVDGTFGAGGYTRAFLSRGAEVIAFDRDARVQPFVEAVRG 65 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 D+ ++F FS++ + + GVD +V D+GVSSMQ+D DRGFSF + GPLDMR Sbjct: 66 DFGDRFRFVNRPFSEMAAGLAELGVDRVDAIVLDIGVSSMQLDEADRGFSFMRDGPLDMR 125 Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 M+ G+SA+D+VN+ D+ I+ + GEE ++ IA AIVKRR+ APF+ T DL+++++ Sbjct: 126 MAVDGLSAADIVNEWAEADIAHIIWLYGEEHRSRAIAAAIVKRRKEAPFERTLDLAAVVE 185 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 K V + +++HPAT++FQALRI VN+E+ EL L ++E+ LK G+L VV+FHSLEDR Sbjct: 186 KAVGGRRGDKVHPATKTFQALRIAVNDELGELESALEASERLLKPEGVLAVVTFHSLEDR 245 Query: 257 LVKKFFASRSGKV-MAVRHMIPSNAHPA-VFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 +VK F A R+G+ RH PA ++ + + + P++ +++ N R+RSAKLRA Sbjct: 246 MVKSFLAERAGRTPSGSRHAPQIQTGPAPTYRLDSTRAIAPSEAELSGNPRARSAKLRAA 305 Query: 315 MRT 317 RT Sbjct: 306 RRT 308 >gi|316933178|ref|YP_004108160.1| S-adenosyl-methyltransferase MraW [Rhodopseudomonas palustris DX-1] gi|315600892|gb|ADU43427.1| S-adenosyl-methyltransferase MraW [Rhodopseudomonas palustris DX-1] Length = 332 Score = 267 bits (683), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 156/330 (47%), Positives = 200/330 (60%), Gaps = 10/330 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAV 71 + H+ HVPVL + + LL P G V +D TFGAGGY+R + GS VIA+DRDP A+ Sbjct: 1 MSHSDSRHVPVLGPEAVGLLAPRDGGVYVDGTFGAGGYTRLILQTAGSRVIAIDRDPTAI 60 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQ 128 G + + + +L Q FS L D +G VDGVV D+GVSSMQ+D +RGFSF+ Sbjct: 61 VGGAGLVAEAGGRLTLVQDRFSNLADVCAAQGAATVDGVVIDIGVSSMQLDQAERGFSFR 120 Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM G SA+DVV +A+ DL I+ I GEE+ + +A AIV R P TT Sbjct: 121 FDGPLDMRMGRDGPSAADVVARASETDLANIIYIFGEERYSRHVARAIVAARSETPITTT 180 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 + L+ ++ K V +K IHPATR+FQ LRIFVN E++EL Q L +AE+ LK GG L VV Sbjct: 181 KALADIVAKVVR-AKPGEIHPATRTFQGLRIFVNEELDELHQALDAAERVLKPGGRLAVV 239 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPA-VFQSITKKVVVPTQEDVAFNRRSR 307 SFHSLEDR+VK F A RS RH+ P A A F + K+ +V +VA N R+R Sbjct: 240 SFHSLEDRIVKTFLAERSKTGGGSRHL-PEVAQAAPSFTLLAKRPIVAGDAEVAANPRAR 298 Query: 308 SAKLRAGMRTVERSIEDDSFVHLPRLPTLS 337 SAKLR RT + LP PTL+ Sbjct: 299 SAKLRGAERT---EAPAHAAGDLPGWPTLA 325 >gi|218532980|ref|YP_002423796.1| S-adenosyl-methyltransferase MraW [Methylobacterium chloromethanicum CM4] gi|263456414|sp|B7KU77|RSMH_METC4 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|218525283|gb|ACK85868.1| S-adenosyl-methyltransferase MraW [Methylobacterium chloromethanicum CM4] Length = 353 Score = 267 bits (682), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 144/305 (47%), Positives = 193/305 (63%), Gaps = 7/305 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 HVPVLL +V+A L+ + +D TFGAGGY+R+ + G V IA+DRDP A+ G + Sbjct: 22 HVPVLLAEVLAALSLDRPGLAVDGTFGAGGYTRALLEAGPEVRVIAIDRDPTAIRGGADL 81 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + + + L Q F +L + D+ D VV D+GVSSMQID RGFSF++ GPLD Sbjct: 82 VNAFGGRLRLVQGRFGELDTLIADQNEAQADWVVLDIGVSSMQIDEAQRGFSFRQDGPLD 141 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRM G SA+D+VN L IL GEE+++ +A AIV+ R+ AP TT L+ L Sbjct: 142 MRMGGEGPSAADLVNGEEETTLADILYHFGEERRSRAVARAIVEARRRAPIVTTAQLADL 201 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 + V + IHPATRSFQ LRI VN+E+ EL +GL +AE+ LK GG L VV+FHSLE Sbjct: 202 VAGVVRPEPGSPIHPATRSFQGLRIAVNDELGELVRGLHAAERVLKPGGRLAVVTFHSLE 261 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRSAKLR 312 DR+VK+FF++RSG+ +P PA F+ +TK V+P++ + N RSRSAKLR Sbjct: 262 DRIVKQFFSARSGRAAQASRHVPGVERPAPKSFKLVTKGPVLPSEAETDVNPRSRSAKLR 321 Query: 313 AGMRT 317 AG RT Sbjct: 322 AGERT 326 >gi|39936600|ref|NP_948876.1| S-adenosyl-methyltransferase MraW [Rhodopseudomonas palustris CGA009] gi|42559427|sp|P60398|RSMH_RHOPA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|39650456|emb|CAE28979.1| Bacterial methyltransferase [Rhodopseudomonas palustris CGA009] Length = 332 Score = 267 bits (682), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 154/327 (47%), Positives = 201/327 (61%), Gaps = 18/327 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETM 78 H+PVL + + LL P G + +D TFGAGGY+R + GS VIA+DRDP A++ G + + Sbjct: 8 HIPVLGPEAVGLLAPRAGGIYVDGTFGAGGYTRLILETAGSRVIAIDRDPSAIAGGADLV 67 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + + +L Q FS L D +G VDGVV D+GVSSMQ+D +RGFSF+ GPLDM Sbjct: 68 TEAGGRLTLVQDRFSNLADVCAAQGAATVDGVVMDIGVSSMQLDQAERGFSFRFDGPLDM 127 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RM G SA+DVV +A+ DL I+ I GEE+ + +A AIV R P TT+ L+ ++ Sbjct: 128 RMGRDGPSAADVVARASETDLANIIYIFGEERYSRHVARAIVAARSETPITTTKALADIV 187 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 K V +K IHPATR+FQ LRIFVN E++EL Q L +AE+ LK G L VVSFHSLED Sbjct: 188 AKVVR-AKPGEIHPATRTFQGLRIFVNEELDELHQALDAAERVLKPSGRLAVVSFHSLED 246 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPA-VFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 R+VK F A RS RH+ P A A F ++K+ +V +VA N R+RSAKLR Sbjct: 247 RIVKTFLAERSKTGGGSRHL-PEVAQAAPSFTLLSKRPIVAGDAEVAANPRARSAKLRGA 305 Query: 315 MRTVERSIEDDSFVH----LPRLPTLS 337 RT +S H LP PTL+ Sbjct: 306 ERT-------ESPAHAAGDLPGWPTLA 325 >gi|126461541|ref|YP_001042655.1| S-adenosyl-methyltransferase MraW [Rhodobacter sphaeroides ATCC 17029] gi|262825567|sp|A3PHR7|RSMH_RHOS1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|126103205|gb|ABN75883.1| S-adenosyl-methyltransferase MraW [Rhodobacter sphaeroides ATCC 17029] Length = 331 Score = 267 bits (682), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 142/300 (47%), Positives = 194/300 (64%), Gaps = 4/300 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETM 78 H+PVLL ++A + P G LD TFGAGGY+R + G++ VI +DRDP A+ Sbjct: 11 HIPVLLRPLLAAVAPVEG-TWLDGTFGAGGYARGLLEAGADRVIGVDRDPLALKMASGWA 69 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138 DY ++ L TFSQL + +DGVV DLGVSSMQ+D +RGFSFQK GPLDMRMS Sbjct: 70 GDYGDRLRLVAGTFSQLDSHA-GAPLDGVVLDLGVSSMQLDLAERGFSFQKDGPLDMRMS 128 Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198 G SA+D+VN A+ + L IL GEE+ + RIA AIV+ R +AP T L+ ++ + Sbjct: 129 QEGESAADLVNTASEESLADILYHYGEERASRRIARAIVEARAAAPITRTLALAEIVARC 188 Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258 + K ++HPATRSFQA+RI VN E EL +GL +AE+AL+ GG L VV+FHSLEDR+V Sbjct: 189 LPRPKPGQMHPATRSFQAIRIAVNAEFSELVEGLEAAERALRPGGRLAVVTFHSLEDRIV 248 Query: 259 KKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 K+F RS G+ R+ + A+ F ++ + P + ++A N R+RSA+LR G+RT Sbjct: 249 KRFLQLRSGGEGQGNRYAPETRAYAPRFTLPLRRAISPDEAELAENPRARSARLRVGVRT 308 >gi|254512159|ref|ZP_05124226.1| S-adenosyl-methyltransferase MraW [Rhodobacteraceae bacterium KLH11] gi|221535870|gb|EEE38858.1| S-adenosyl-methyltransferase MraW [Rhodobacteraceae bacterium KLH11] Length = 330 Score = 266 bits (681), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 149/311 (47%), Positives = 192/311 (61%), Gaps = 5/311 (1%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRD 67 M+ A + H+PVLL ++A + P G V LD TFGAGGY+R + G+ VI +DRD Sbjct: 1 MAGAQTSSDKPHIPVLLRPLLAAVAPVSG-VWLDGTFGAGGYTRGLLEAGAEKVIGVDRD 59 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 P A + Y ++ + Q FS + +Y D +DGVV DLGVSSMQ+D +RGFSF Sbjct: 60 PLAFEMAADWAGGYGDRLVMQQGVFSCMDEYARD--LDGVVLDLGVSSMQLDQAERGFSF 117 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 K GPLDMRMS G SA+D+VN+A L IL GEE+ + RIA AIV+ R P T Sbjct: 118 MKDGPLDMRMSQQGDSAADLVNEATEAQLADILFHYGEERASRRIARAIVRARAEDPITT 177 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T L+ +I+ + K + HPATRSFQ LRI VN E EEL QGL +AE+ALK GG L V Sbjct: 178 TLRLAEIIESCLPRPKPGQSHPATRSFQGLRIAVNAEYEELFQGLMAAERALKPGGQLAV 237 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHP-AVFQSITKKVVVPTQEDVAFNRRS 306 V+FHS+EDR+VK+FF SR+GK P A F T+K V P +++ N R+ Sbjct: 238 VTFHSIEDRMVKRFFQSRAGKTGRANRYAPEMAQEQPQFTLKTRKAVGPDDQELEENPRA 297 Query: 307 RSAKLRAGMRT 317 RSAKLR +RT Sbjct: 298 RSAKLRVAVRT 308 >gi|197105793|ref|YP_002131170.1| S-adenosyl-methyltransferase [Phenylobacterium zucineum HLK1] gi|262824815|sp|B4RFS8|RSMH_PHEZH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|196479213|gb|ACG78741.1| S-adenosyl-methyltransferase [Phenylobacterium zucineum HLK1] Length = 310 Score = 266 bits (681), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 146/305 (47%), Positives = 200/305 (65%), Gaps = 15/305 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 HVPVL+++V+ L PAPG+ I+D TFGAGGY+R+ G++V+A DRDP T+R Sbjct: 5 HVPVLMQEVVDALAPAPGRTIIDGTFGAGGYTRAILATGASVVAFDRDP--------TVR 56 Query: 80 DYKE-----QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + E +F L +A FS++ + + + DGV DLGVSSMQ+D +RGFSF + GPLD Sbjct: 57 RFAEGLPADRFRLVEARFSEMDEVLGEGAADGVALDLGVSSMQLDQAERGFSFMQDGPLD 116 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRM SG +A+D+VN A +L RI + GEE+++ RIA AI +RR+ PF T +L+ Sbjct: 117 MRMGASGPTAADLVNTAEPAELARIFFVYGEERESRRIARAIARRREEQPFTRTLELADF 176 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 I+K + + +IHPATR+FQ LRI VN E+ EL GL +AE+ LK G L VV+FHSLE Sbjct: 177 IEKALGGRRGAKIHPATRAFQGLRIAVNEELSELEAGLAAAERVLKPEGRLCVVTFHSLE 236 Query: 255 DRLVKKFFASRSGKVMA-VRHMIPSNAHPAV-FQSITKKVVVPTQEDVAFNRRSRSAKLR 312 DR+VK F + R+G+ A RH P PA FQ + P++ +VA N R+RSAKLR Sbjct: 237 DRIVKSFLSVRAGRTPAGSRHAPPVRQGPAPSFQLLFNGARGPSETEVAANPRARSAKLR 296 Query: 313 AGMRT 317 A +RT Sbjct: 297 AAVRT 301 >gi|262831532|sp|Q133W3|RSMH_RHOPS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 332 Score = 266 bits (681), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 151/322 (46%), Positives = 198/322 (61%), Gaps = 8/322 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQETM 78 H+PVL + + LL P G V +D TFGAGGY+R + + VIA+DRD A++ G + + Sbjct: 8 HIPVLGVEAVGLLAPRDGGVYVDGTFGAGGYTRLILEAADTRVIAIDRDRNAIADGFDLV 67 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + + +L + FS L D +G VDGVV D+GVSSMQ+D DRGFSF+ GPLDM Sbjct: 68 QSTSGRLTLVEDRFSNLADVCEAQGAESVDGVVMDIGVSSMQVDQADRGFSFRLDGPLDM 127 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RM G +A+DVV A+ DL I+ I GEEK + +A AI+ R+ AP TT+ L+ ++ Sbjct: 128 RMGNDGPTAADVVAHASEADLANIIYIFGEEKYSRHVARAIIAARKDAPIVTTKALADIV 187 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 TV SK +IHPATR+FQALRIFVN E++EL Q L +AE+ LK GG L VVSFHSLED Sbjct: 188 -ATVVRSKPGQIHPATRTFQALRIFVNEELDELYQALSAAERVLKPGGRLAVVSFHSLED 246 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 R+VK F RS RH+ F +TK+ +V +VA N R+RSAKLR Sbjct: 247 RIVKTFLGDRSRTGGGSRHLPELTQAAPSFTVLTKRPIVAGDAEVAANPRARSAKLRGAE 306 Query: 316 RTVERSIEDDSFVHLPRLPTLS 337 RT + D LP PTL+ Sbjct: 307 RTAAPAHRPDD---LPGWPTLA 325 >gi|91977868|ref|YP_570527.1| methyltransferase [Rhodopseudomonas palustris BisB5] gi|91684324|gb|ABE40626.1| methyltransferase [Rhodopseudomonas palustris BisB5] Length = 398 Score = 266 bits (681), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 151/322 (46%), Positives = 198/322 (61%), Gaps = 8/322 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQETM 78 H+PVL + + LL P G V +D TFGAGGY+R + + VIA+DRD A++ G + + Sbjct: 74 HIPVLGVEAVGLLAPRDGGVYVDGTFGAGGYTRLILEAADTRVIAIDRDRNAIADGFDLV 133 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + + +L + FS L D +G VDGVV D+GVSSMQ+D DRGFSF+ GPLDM Sbjct: 134 QSTSGRLTLVEDRFSNLADVCEAQGAESVDGVVMDIGVSSMQVDQADRGFSFRLDGPLDM 193 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RM G +A+DVV A+ DL I+ I GEEK + +A AI+ R+ AP TT+ L+ ++ Sbjct: 194 RMGNDGPTAADVVAHASEADLANIIYIFGEEKYSRHVARAIIAARKDAPIVTTKALADIV 253 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 TV SK +IHPATR+FQALRIFVN E++EL Q L +AE+ LK GG L VVSFHSLED Sbjct: 254 -ATVVRSKPGQIHPATRTFQALRIFVNEELDELYQALSAAERVLKPGGRLAVVSFHSLED 312 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 R+VK F RS RH+ F +TK+ +V +VA N R+RSAKLR Sbjct: 313 RIVKTFLGDRSRTGGGSRHLPELTQAAPSFTVLTKRPIVAGDAEVAANPRARSAKLRGAE 372 Query: 316 RTVERSIEDDSFVHLPRLPTLS 337 RT + D LP PTL+ Sbjct: 373 RTAAPAHRPDD---LPGWPTLA 391 >gi|86749109|ref|YP_485605.1| methyltransferase [Rhodopseudomonas palustris HaA2] gi|123292796|sp|Q2IYL6|RSMH_RHOP2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|86572137|gb|ABD06694.1| methyltransferase [Rhodopseudomonas palustris HaA2] Length = 337 Score = 266 bits (680), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 151/323 (46%), Positives = 202/323 (62%), Gaps = 10/323 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETM 78 H+PVL + + LL P G + LD TFGAGGYSR + + VIA+DRD A++ G + + Sbjct: 8 HIPVLGPEAVTLLAPRDGGIYLDGTFGAGGYSRLILEAAATRVIAIDRDRSAIAGGFDLV 67 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + + +L + FS L + +G VDGVV D+GVSSMQ+D DRGFSF++ GPLDM Sbjct: 68 QGAGGRLTLVEDRFSNLAEVCAAQGAPAVDGVVMDIGVSSMQVDQADRGFSFRQDGPLDM 127 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RM G +A+DVV +A+ DL I+ I GEEK + +A A++ R+ AP TT+ L+ ++ Sbjct: 128 RMGTDGPTAADVVARASETDLANIIYIFGEEKFSRHVARAVIAARKEAPITTTKALADIV 187 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 V +K +IHPATR+FQALRIFVN E++EL Q L +AE+ LK GG L VV+FHSLED Sbjct: 188 ASVVR-AKPGQIHPATRTFQALRIFVNEELDELYQALAAAERVLKPGGRLAVVTFHSLED 246 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPA-VFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 R+VK F A RS RH+ P A A F +TK+ +VA N R+RSAKLR G Sbjct: 247 RIVKTFLAERSRVGGGSRHL-PELAQAAPSFTVLTKRPTTAGDAEVAANPRARSAKLRGG 305 Query: 315 MRTVERSIEDDSFVHLPRLPTLS 337 RT + D LP PTL+ Sbjct: 306 ERTAAPAHRPDD---LPGWPTLA 325 >gi|163854037|ref|YP_001642080.1| S-adenosyl-methyltransferase MraW [Methylobacterium extorquens PA1] gi|263456431|sp|A9VW37|RSMH_METEP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|163665642|gb|ABY33009.1| S-adenosyl-methyltransferase MraW [Methylobacterium extorquens PA1] Length = 351 Score = 266 bits (679), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 144/305 (47%), Positives = 192/305 (62%), Gaps = 7/305 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 HVPVLL +V+A L+ + +D TFGAGGY+R+ + G V IA+DRDP A+ G + Sbjct: 20 HVPVLLAEVLAALSLDRPGLAVDGTFGAGGYTRALLEAGPEVRVIAIDRDPTAIRGGADL 79 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + + L Q F L + D+ D VV D+GVSSMQID RGFSF++ GPLD Sbjct: 80 VTASGGRLRLVQGRFGDLDTLIADQDEPQADWVVLDIGVSSMQIDEAQRGFSFRQDGPLD 139 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRM G SA+D+VN L IL GEE+++ +A AIV+ R+ AP +TT L+ L Sbjct: 140 MRMGGEGPSAADLVNGEEETTLADILYHFGEERRSRAVARAIVEARRRAPIETTAQLADL 199 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 + V + IHPATRSFQ LRI VN+E+ EL +GL +AE+ LK GG L VV+FHSLE Sbjct: 200 VAGVVRPEPGSPIHPATRSFQGLRIAVNDELGELVRGLHAAERVLKPGGRLAVVTFHSLE 259 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRSAKLR 312 DR+VK+FF++RSG+ +P PA F+ +TK V+P++ + N RSRSAKLR Sbjct: 260 DRIVKQFFSARSGRAAQASRHVPGVERPAPKSFKLVTKGPVLPSEAETDVNPRSRSAKLR 319 Query: 313 AGMRT 317 AG RT Sbjct: 320 AGERT 324 >gi|254564005|ref|YP_003071100.1| S-adenosyl-dependent methyltransferase [Methylobacterium extorquens DM4] gi|254271283|emb|CAX27295.1| S-adenosyl-dependent methyltransferase [Methylobacterium extorquens DM4] Length = 351 Score = 266 bits (679), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 144/305 (47%), Positives = 192/305 (62%), Gaps = 7/305 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 HVPVLL +V+A L+ + +D TFGAGGY+R+ + G V IA+DRDP A+ G + Sbjct: 20 HVPVLLAEVLAALSLDRPGLAVDGTFGAGGYTRALLEAGPEVRVIAIDRDPTAIRGGADL 79 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + + L Q F L + D+ D VV D+GVSSMQID RGFSF++ GPLD Sbjct: 80 VTASGGRLRLVQGRFGDLDTLIADQDEAQADWVVLDIGVSSMQIDEAQRGFSFRQDGPLD 139 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRM G SA+D+VN L IL GEE+++ +A AIV+ R+ AP +TT L+ L Sbjct: 140 MRMGGEGPSAADLVNGEEETTLADILYHFGEERRSRAVARAIVEARRRAPIETTAQLADL 199 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 + V + IHPATRSFQ LRI VN+E+ EL +GL +AE+ LK GG L VV+FHSLE Sbjct: 200 VAGVVRPEPGSPIHPATRSFQGLRIAVNDELGELVRGLHAAERVLKPGGRLAVVTFHSLE 259 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRSAKLR 312 DR+VK+FF++RSG+ +P PA F+ +TK V+P++ + N RSRSAKLR Sbjct: 260 DRIVKQFFSARSGRAAQASRHVPGVERPAPKSFKLVTKGPVLPSEAETDVNPRSRSAKLR 319 Query: 313 AGMRT 317 AG RT Sbjct: 320 AGERT 324 >gi|323137901|ref|ZP_08072976.1| S-adenosyl-methyltransferase MraW [Methylocystis sp. ATCC 49242] gi|322396904|gb|EFX99430.1| S-adenosyl-methyltransferase MraW [Methylocystis sp. ATCC 49242] Length = 346 Score = 266 bits (679), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 158/322 (49%), Positives = 205/322 (63%), Gaps = 8/322 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSNVIALDRDPFAVSCGQETM 78 HVPVLL +VI L P PG LDATFGAGGY+R+ + V+ALDRDP AV G+ + Sbjct: 19 HVPVLLREVIDALRPTPGGRYLDATFGAGGYTRAILAHPETRVLALDRDPNAVRDGRPLV 78 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + + +L +A FSQL + +G +DGVVFD+GVSSMQ D +RGFSF+ GPLDM Sbjct: 79 EVARGRLTLVEARFSQLDEVARARGFAPLDGVVFDIGVSSMQFDEAERGFSFRGDGPLDM 138 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RM G +A+D+VN+A+ + L IL GEE+ A RIA AIV R+ APF +T+ L+ +I Sbjct: 139 RMEGRGQTAADIVNEADEETLADILYFYGEERAARRIARAIVHDRKLAPFASTRALAEMI 198 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + V + IHPAT+SFQALRI VN+E+ EL GL AE+AL GG L VV+FHSLED Sbjct: 199 AR-VAPGRPGDIHPATKSFQALRIAVNDELGELLDGLAGAERALAEGGRLAVVTFHSLED 257 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 R+VK+FFA R G+ +P A P F ++ V PT+E+ N R+RSAKLR Sbjct: 258 RIVKQFFAERCGRGETGSRRLPGEAAPPPRSFICEGRQPVAPTREETERNPRARSAKLRF 317 Query: 314 GMRTVERSIE-DDSFVHLPRLP 334 RT ++ DD L RLP Sbjct: 318 ATRTAGPALPLDDRLARLARLP 339 >gi|221638505|ref|YP_002524767.1| S-adenosyl-methyltransferase MraW [Rhodobacter sphaeroides KD131] gi|262825605|sp|B9KNI8|RSMH_RHOSK RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|221159286|gb|ACM00266.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Rhodobacter sphaeroides KD131] Length = 331 Score = 266 bits (679), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 142/300 (47%), Positives = 193/300 (64%), Gaps = 4/300 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETM 78 H+PVLL ++A + P G LD TFGAGGY+R + G++ VI +DRDP A+ Sbjct: 11 HIPVLLRPLLAAVAPVEG-TWLDGTFGAGGYARGLLEAGADRVIGVDRDPLALEMASGWA 69 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138 DY ++ L TFSQL + +DGVV DLGVSSMQ+D +RGFSFQK GPLDMRMS Sbjct: 70 GDYGDRLRLVAGTFSQLDSHA-GAPLDGVVLDLGVSSMQLDLAERGFSFQKDGPLDMRMS 128 Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198 G SA+D+VN A+ + L IL GEE+ + RIA AIV+ R +AP T L+ ++ + Sbjct: 129 QEGESAADLVNTASEETLADILYHYGEERASRRIARAIVEARAAAPITRTLALAEIVARC 188 Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258 + K ++HPATRSFQA+RI VN E EL +GL +AE+AL+ GG L VV+FHSLEDR+V Sbjct: 189 LPRPKPGQMHPATRSFQAIRIAVNAEFSELVEGLEAAERALRPGGRLAVVTFHSLEDRIV 248 Query: 259 KKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 K+F RS G+ R+ + A F ++ + P + ++A N R+RSA+LR G+RT Sbjct: 249 KRFLQLRSGGEGQGNRYAPETRADAPRFTLPLRRAISPDEAELAENPRARSARLRVGVRT 308 >gi|77462648|ref|YP_352152.1| methyltransferase MraW/YabC [Rhodobacter sphaeroides 2.4.1] gi|88909216|sp|Q3J4N3|RSMH_RHOS4 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|77387066|gb|ABA78251.1| methyltransferase MraW/YabC [Rhodobacter sphaeroides 2.4.1] Length = 331 Score = 265 bits (678), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 142/300 (47%), Positives = 193/300 (64%), Gaps = 4/300 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETM 78 H+PVLL ++A + P G LD TFGAGGY+R + G++ VI +DRDP A+ Sbjct: 11 HIPVLLRPLLAAVAPVEG-TWLDGTFGAGGYARGLLEAGADRVIGVDRDPLALKMASGWA 69 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138 DY ++ L TFSQL + +DGVV DLGVSSMQ+D +RGFSFQK GPLDMRMS Sbjct: 70 GDYGDRLRLVAGTFSQLDSHA-GAPLDGVVLDLGVSSMQLDLAERGFSFQKDGPLDMRMS 128 Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198 G SA+D+VN A+ + L IL GEE+ + RIA AIV+ R +AP T L+ ++ + Sbjct: 129 QEGESAADLVNTASEETLADILYHYGEERASRRIARAIVEARAAAPITRTLALAEIVARC 188 Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258 + K ++HPATRSFQA+RI VN E EL +GL +AE+AL+ GG L VV+FHSLEDR+V Sbjct: 189 LPRPKPGQMHPATRSFQAIRIAVNAEFSELVEGLEAAERALRPGGRLAVVTFHSLEDRIV 248 Query: 259 KKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 K+F RS G+ R+ + A F ++ + P + ++A N R+RSA+LR G+RT Sbjct: 249 KRFLQLRSGGEGQGNRYAPETRADAPRFTLPLRRAISPDEAELAENPRARSARLRVGVRT 308 >gi|240141491|ref|YP_002965971.1| S-adenosyl-dependent methyltransferase [Methylobacterium extorquens AM1] gi|263456428|sp|C5ATZ5|RSMH_METEA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|240011468|gb|ACS42694.1| S-adenosyl-dependent methyltransferase [Methylobacterium extorquens AM1] Length = 351 Score = 265 bits (677), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 143/305 (46%), Positives = 192/305 (62%), Gaps = 7/305 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 HVPVLL +V+A L+ + +D TFGAGGY+R+ + G V IA+DRDP A+ G + Sbjct: 20 HVPVLLAEVLAALSLDRPGLAVDGTFGAGGYTRALLEAGPEVRVIAIDRDPTAIRGGADL 79 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + + L Q F L + D+ D +V D+GVSSMQID RGFSF++ GPLD Sbjct: 80 VTASGGRLRLVQGRFGDLDTLIADQDEAQADWIVLDIGVSSMQIDEAQRGFSFRQDGPLD 139 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRM G SA+D+VN L IL GEE+++ +A AIV+ R+ AP +TT L+ L Sbjct: 140 MRMGGEGPSAADLVNGEEETTLADILYHFGEERRSRAVARAIVEARRRAPIETTAQLADL 199 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 + V + IHPATRSFQ LRI VN+E+ EL +GL +AE+ LK GG L VV+FHSLE Sbjct: 200 VAGVVRPEPGSPIHPATRSFQGLRIAVNDELGELVRGLHAAERVLKPGGRLAVVTFHSLE 259 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRSAKLR 312 DR+VK+FF++RSG+ +P PA F+ +TK V+P++ + N RSRSAKLR Sbjct: 260 DRIVKQFFSARSGRAAQASRHVPGVERPAPKSFKLVTKGPVLPSEAETDVNPRSRSAKLR 319 Query: 313 AGMRT 317 AG RT Sbjct: 320 AGERT 324 >gi|85373178|ref|YP_457240.1| S-adenosyl-methyltransferase MraW [Erythrobacter litoralis HTCC2594] gi|122545211|sp|Q2NCZ8|RSMH_ERYLH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|84786261|gb|ABC62443.1| S-adenosyl-methyltransferase [Erythrobacter litoralis HTCC2594] Length = 315 Score = 265 bits (676), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 138/304 (45%), Positives = 198/304 (65%), Gaps = 10/304 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 HVPVLL++V+A L+P PG V++DATFGAGGY+R+ G+ V A DRDP A++ G + Sbjct: 7 HVPVLLDEVVAALDPQPGDVLVDATFGAGGYTRALLDSGATVHAFDRDPDAIAAGSQWPE 66 Query: 80 DYKE--QFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 +E + L FS++ + + GV DGV D+GVSSMQ+D RGF+F GPLD Sbjct: 67 TKEEPPRLVLHPRRFSEMVHALAEAGVAQVDGVAMDIGVSSMQLDQAQRGFAFSADGPLD 126 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRMS G SA+D +N A +++ +L GEE+Q+ R+A AI+ R P +TT DL+ + Sbjct: 127 MRMSQHGPSAADFLNSAEAEEIADVLYQYGEERQSRRVARAIIAAR---PLETTGDLARV 183 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 ++K + + PATR+FQA+RI VN E++EL +GL +AE L++GG L VVSFHSLE Sbjct: 184 VRKALGYRVGAPKDPATRTFQAVRIHVNGELDELREGLHAAEHLLRSGGRLAVVSFHSLE 243 Query: 255 DRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 DR+VK+F S SGK +P ++ PA+F I+ K + P++ ++A N R+RS+ LR Sbjct: 244 DRIVKRFLQSASGKAGGTSRYLPQTDVSPAIFSDIS-KAIRPSEAEIARNPRARSSTLRH 302 Query: 314 GMRT 317 RT Sbjct: 303 ATRT 306 >gi|332557530|ref|ZP_08411852.1| 16S rRNA m(4)C1402 methyltranserfase [Rhodobacter sphaeroides WS8N] gi|332275242|gb|EGJ20557.1| 16S rRNA m(4)C1402 methyltranserfase [Rhodobacter sphaeroides WS8N] Length = 331 Score = 265 bits (676), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 142/300 (47%), Positives = 193/300 (64%), Gaps = 4/300 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETM 78 H+PVLL ++A + P G LD TFGAGGY+R + G++ VI +DRDP A+ Sbjct: 11 HIPVLLRPLLAAVAPVEG-TWLDGTFGAGGYARGLLEAGADRVIGVDRDPLALKMASGWA 69 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138 DY ++ L TFSQL + +DGVV DLGVSSMQ+D +RGFSFQK GPLDMRMS Sbjct: 70 GDYGDRLRLVAGTFSQLDSHA-GAPLDGVVLDLGVSSMQLDLAERGFSFQKDGPLDMRMS 128 Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198 G SA+D+VN A+ + L IL GEE+ + RIA AIV+ R +AP T L+ ++ + Sbjct: 129 QEGESAADLVNTASEETLADILYHYGEERASRRIARAIVEARAAAPITRTLALAEIVARC 188 Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258 + K ++HPATRSFQA+RI VN E EL +GL +AE+AL+ GG L VV+FHSLEDR+V Sbjct: 189 LPRPKPGQMHPATRSFQAIRIAVNAEFSELVEGLEAAERALRHGGRLAVVTFHSLEDRIV 248 Query: 259 KKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 K+F RS G+ R+ + A F ++ + P + ++A N R+RSA+LR G+RT Sbjct: 249 KRFLQLRSGGEGQGNRYAPETRADAPRFTLPLRRAISPDEAELAENPRARSARLRVGVRT 308 >gi|254419187|ref|ZP_05032911.1| S-adenosyl-methyltransferase MraW [Brevundimonas sp. BAL3] gi|196185364|gb|EDX80340.1| S-adenosyl-methyltransferase MraW [Brevundimonas sp. BAL3] Length = 322 Score = 265 bits (676), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 141/303 (46%), Positives = 183/303 (60%), Gaps = 5/303 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H PVLL +VI L P PG V++DATFGAGGY+R+ G+ VI LDRDP + Sbjct: 6 HAPVLLAEVIEALKPGPGDVVIDATFGAGGYTRAILATGAQVIGLDRDPTVQPHADAVAK 65 Query: 80 DYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 D+ QF L + FS L D G +DG VFD+GVSSMQ+D +RGFSF + GPLDMR Sbjct: 66 DFPGQFQLIRTPFSGLAQAFADSGKAKLDGAVFDIGVSSMQLDQAERGFSFMRDGPLDMR 125 Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 MS G +A+D+VN + L I + GEE+Q+ R+A AI++RR F T DL+ +++ Sbjct: 126 MSDEGETAADIVNSWDHGPLAHIFKLYGEERQSGRVATAILRRRVEQSFTRTLDLAEVVE 185 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 K + + IHPATR FQALRI VN+E+ EL +GL +AE L GG L VV+FHSLEDR Sbjct: 186 KALGGRRGAPIHPATRVFQALRIAVNDELGELERGLEAAEATLAPGGRLAVVTFHSLEDR 245 Query: 257 LVKKFFASRSGKVMAVRHMIPSNAHP--AVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 +VK F R+G A P P F K + + + N R+RSAKLRA Sbjct: 246 IVKAFLTERTGNTPAGSRHAPIAVDPRKPSFTLQFKGAREAGEGERSTNPRARSAKLRAA 305 Query: 315 MRT 317 +RT Sbjct: 306 VRT 308 >gi|114704930|ref|ZP_01437838.1| S-adenosyl-methyltransferase [Fulvimarina pelagi HTCC2506] gi|114539715|gb|EAU42835.1| S-adenosyl-methyltransferase [Fulvimarina pelagi HTCC2506] Length = 339 Score = 264 bits (675), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 156/324 (48%), Positives = 202/324 (62%), Gaps = 6/324 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 HVPVLL +VI L P G+ I+D TFGAGGY+R+ G+ VIA+DRDP A+ + Sbjct: 18 HVPVLLAEVIEALAPNAGETIVDGTFGAGGYTRAILGAGAEVIAIDRDPTAIETARALAG 77 Query: 80 DYKEQFSLFQATFSQLQDYVPDK--GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 + + + F + + D+ +DG+V D+GVSSMQID +RGFSFQK GPLDMRM Sbjct: 78 ESNGRLTPVAGRFGAMGSLLSDRQGAIDGIVLDVGVSSMQIDKAERGFSFQKDGPLDMRM 137 Query: 138 SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK 197 G +A+DVVN +V DL RI LG+E+ A R A AIV RR++ PF T DL+ ++ K Sbjct: 138 GNHGATAADVVNTLSVGDLARIFNFLGDERHAGRAARAIVARREAKPFVRTLDLAGVVGK 197 Query: 198 TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRL 257 V K+ +I PATR FQALRIFVN+E+ ELA+ L +AE LK GG L+VVSFHSLEDR+ Sbjct: 198 AVGRGKHEKIDPATRCFQALRIFVNDELGELARALVAAEGLLKPGGRLVVVSFHSLEDRI 257 Query: 258 VKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR- 316 VK+FF R+G RH+ F S K V ++ + A N R+RSAKLR G R Sbjct: 258 VKRFFLDRAGTQGGSRHLPDVMPEVPTF-SARNKAVAASEREAADNPRARSAKLRFGTRL 316 Query: 317 -TVERSIEDDSFVHLPRLPTLSQF 339 RS D +F LP L LS+ Sbjct: 317 EAAPRS-GDLAFASLPDLADLSRI 339 >gi|83858922|ref|ZP_00952444.1| hypothetical protein OA2633_05446 [Oceanicaulis alexandrii HTCC2633] gi|83853745|gb|EAP91597.1| hypothetical protein OA2633_05446 [Oceanicaulis alexandrii HTCC2633] Length = 334 Score = 263 bits (672), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 147/328 (44%), Positives = 200/328 (60%), Gaps = 11/328 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78 H+PV+L++V+ L P G + +D TFGAGGY+R V+ +DRDP A + Sbjct: 6 HIPVMLDEVLTHLQPRDGGLYVDGTFGAGGYTRGILGAADCRVLGIDRDPSARETAERMK 65 Query: 79 RDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 YK +F+ FS ++D + GVDGVV DLGVSSMQ+D +RGFSFQK GPLDM Sbjct: 66 PAYKGRFAFGFGPFSMMEDIIEAAGSSGVDGVVLDLGVSSMQLDQAERGFSFQKDGPLDM 125 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RMS SG +A+D VN +L I + GEE+ A R A+AIV+ R+ P T L+ +I Sbjct: 126 RMSQSGPTAADAVNHLEAHELAAIFKVYGEERHARRAANAIVRAREVEPITRTLVLADII 185 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + V K RIHPATRSFQ LRI+VN+E+ EL +GL++AE+ L+ G L+VV+FHSLED Sbjct: 186 GRAVG-GKPGRIHPATRSFQGLRIYVNDELGELVRGLQAAERVLRPAGRLVVVTFHSLED 244 Query: 256 RLVKKFFASRSGKV-MAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 R+VK F R+G RH I + P+ F ++KK + T+ + A N RSRSAKLR Sbjct: 245 RIVKTFLRERAGLTGGGSRHQPEIQAERDPS-FALVSKKALSATEAEAAENPRSRSAKLR 303 Query: 313 AGMRTVERSI--EDDSFVHLPRLPTLSQ 338 A +R + ED+ F +P L + Sbjct: 304 AAIRNEHEAWPREDEGFAGVPSYRRLEE 331 >gi|260430921|ref|ZP_05784892.1| S-adenosyl-methyltransferase MraW [Silicibacter lacuscaerulensis ITI-1157] gi|260414749|gb|EEX08008.1| S-adenosyl-methyltransferase MraW [Silicibacter lacuscaerulensis ITI-1157] Length = 331 Score = 263 bits (671), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 145/307 (47%), Positives = 191/307 (62%), Gaps = 7/307 (2%) Query: 15 HTIGD--HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAV 71 HT D H+PVLL ++ + P G LD TFGAGGY+R + G++ VI +DRDP A Sbjct: 6 HTPTDKPHIPVLLRPLLDAVRPVSG-TWLDGTFGAGGYTRGLLEAGADRVIGVDRDPLAF 64 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +Y ++ + FS++ +Y D +DGVV DLGVSSMQ+D +RGFSF K G Sbjct: 65 EMAADWAAEYGDRLVMQPGVFSRMDEYASD--LDGVVLDLGVSSMQLDQAERGFSFMKDG 122 Query: 132 PLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 PLDMRMS G SA+D+VN A L IL GEE+ + RIA AIVK R AP TT L Sbjct: 123 PLDMRMSQEGESAADLVNTATEAQLADILFHYGEERASRRIARAIVKARAEAPITTTLRL 182 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +++ + +K + HPATRSFQALRI VN E EEL QGL +AE+ALK GG L VV+FH Sbjct: 183 AEIVESCLPRAKPGQSHPATRSFQALRIAVNAEYEELFQGLMAAERALKPGGKLAVVTFH 242 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPS-NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 S+EDR+VK+F +R+GK P F T+K + P +++ N R+RSAK Sbjct: 243 SVEDRMVKRFLQARAGKTGRANRYAPEIQQDQPQFTLKTRKAIGPDAQELQDNPRARSAK 302 Query: 311 LRAGMRT 317 LR +RT Sbjct: 303 LRVAVRT 309 >gi|16126800|ref|NP_421364.1| hypothetical protein CC_2562 [Caulobacter crescentus CB15] gi|221235581|ref|YP_002518018.1| S-adenosyl-methyltransferase MraW [Caulobacter crescentus NA1000] gi|20139272|sp|Q9RQJ6|RSMH_CAUCR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446411|sp|B8H0A2|RSMH_CAUCN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|6318314|gb|AAF06834.1|AF099190_2 unknown [Caulobacter crescentus CB15] gi|13424128|gb|AAK24532.1| conserved hypothetical protein [Caulobacter crescentus CB15] gi|220964754|gb|ACL96110.1| S-adenosyl-methyltransferase mraW [Caulobacter crescentus NA1000] Length = 311 Score = 263 bits (671), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 145/305 (47%), Positives = 206/305 (67%), Gaps = 15/305 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+ VLL++V+ L+ PG V++D TFGAGGY+R+ G++V+A DRDP T+R Sbjct: 6 HISVLLDEVVEALDAKPGDVVVDGTFGAGGYTRAVLPTGASVVAFDRDP--------TVR 57 Query: 80 DYK-----EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + ++F L QA FS++ D + + V+GV+ DLGVSSMQ+D +RGFSF + GPLD Sbjct: 58 QFAANLPADRFRLVQARFSEMLDELGPESVEGVMLDLGVSSMQLDQAERGFSFMRDGPLD 117 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRM +G +A+D+VN + +L +IL + GEE + RIA I++RR+ PF+ T DL+ + Sbjct: 118 MRMGDTGPTAADLVNTLDHAELAKILYVYGEEHASRRIASFILRRREERPFERTLDLAEV 177 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 I++ V K ++HPATRSFQ LRI VN+E+ EL GL +AE+ LK GG L+VV+FHSLE Sbjct: 178 IERAVGGRKGAKVHPATRSFQGLRIAVNDELGELEAGLAAAERVLKPGGRLVVVTFHSLE 237 Query: 255 DRLVKKFFASRSGKVM-AVRHMIPSNAHPAV-FQSITKKVVVPTQEDVAFNRRSRSAKLR 312 DR+VK F A R+GK RH P A A FQ I+ K + P++ ++A N R+RS+KLR Sbjct: 238 DRIVKAFLAERAGKAPGGSRHAPPVAAGAAPSFQLISNKAIAPSEAELAVNPRARSSKLR 297 Query: 313 AGMRT 317 A +RT Sbjct: 298 AAVRT 302 >gi|154252855|ref|YP_001413679.1| S-adenosyl-methyltransferase MraW [Parvibaculum lavamentivorans DS-1] gi|262824741|sp|A7HVT9|RSMH_PARL1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|154156805|gb|ABS64022.1| S-adenosyl-methyltransferase MraW [Parvibaculum lavamentivorans DS-1] Length = 339 Score = 262 bits (669), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 147/316 (46%), Positives = 204/316 (64%), Gaps = 9/316 (2%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALD 65 MS ++ H+PV+L V+ +L P G V +D TFGAGGY+R+ +GS V+A+D Sbjct: 1 MSDNGQNSASPHIPVMLADVLDVLKPRDGGVYVDGTFGAGGYTRAI--LGSADCAVLAID 58 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGD 122 RDP A+ G+ ++ + +L + F ++ V + G VDGVV D+GVSSMQ+D + Sbjct: 59 RDPTAILRGRALATEFAGRLTLIEGRFGDMKRLVRELGHGTVDGVVLDIGVSSMQLDQAE 118 Query: 123 RGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 RGFSFQ+ GPLDMRM G SA+DVVN + DL RI+ + GEEK+A +A AIV RQ+ Sbjct: 119 RGFSFQQDGPLDMRMGGEGPSAADVVNHFDEADLARIIAVYGEEKRARAVARAIVAARQT 178 Query: 183 APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 A T +L+ L+ ++ +RIHPATR+FQALRIFVN+E+ ELA+GL AE L G Sbjct: 179 AELHRTLELADLVASVIHRKPQDRIHPATRTFQALRIFVNDELGELARGLSGAEDLLHEG 238 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 G L VV+FHSLEDR+VK+F +R+G+ A R+M + F+ I K + ++E+V Sbjct: 239 GRLAVVAFHSLEDRIVKRFLTARTGRAGRANRYMPERDEVAPSFREIAHKAMKASEEEVE 298 Query: 302 FNRRSRSAKLRAGMRT 317 N R+RSAKLRA RT Sbjct: 299 INVRARSAKLRAAERT 314 >gi|85703617|ref|ZP_01034721.1| S-adenosyl-methyltransferase MraW [Roseovarius sp. 217] gi|85672545|gb|EAQ27402.1| S-adenosyl-methyltransferase MraW [Roseovarius sp. 217] Length = 330 Score = 261 bits (666), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 136/300 (45%), Positives = 194/300 (64%), Gaps = 5/300 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETM 78 H+PVLL ++A + P G V LD T GAGGY+R + G++ V+ +DRDP A+ +E Sbjct: 13 HIPVLLRPLLAAVAPVRG-VWLDGTLGAGGYARGLLEAGADQVVGVDRDPLALEMAREWG 71 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138 +Y ++ L Q F+Q+ DY D +DGVV DLGVSSMQ+D +RGFSF + GPLDMRMS Sbjct: 72 AEYGDRLRLVQGNFAQMDDYAAD--LDGVVLDLGVSSMQLDRAERGFSFMRDGPLDMRMS 129 Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198 G +A+D+VN + +L IL + GEE+ + RIA AIVK R+ P ++T L+ ++++ Sbjct: 130 QDGPTAADLVNTTDEAELADILYLYGEERASRRIARAIVKAREVTPIESTLQLTGIVERC 189 Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258 + SK + H ATRSFQA+RI VN+E L +GL +AE+AL+ GG L VV+FHS+EDR+V Sbjct: 190 LPRSKPGQAHVATRSFQAIRIAVNDEYGSLIEGLEAAERALRPGGQLAVVTFHSIEDRMV 249 Query: 259 KKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 K+F RSG RH F ++K + P +++A N R+RSA+LR +RT Sbjct: 250 KRFMQLRSGGGGTGSRHAPEIEREAPQFSLKSRKAIGPDDDELAVNPRARSARLRVAVRT 309 >gi|114773347|ref|ZP_01450551.1| S-adenosyl-methyltransferase MraW [alpha proteobacterium HTCC2255] gi|114546281|gb|EAU49192.1| S-adenosyl-methyltransferase MraW [alpha proteobacterium HTCC2255] Length = 337 Score = 261 bits (666), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 141/320 (44%), Positives = 201/320 (62%), Gaps = 7/320 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI-ALDRDPFAVSCGQETM 78 H+PVLL ++ + P G + +D TFGAGGYSR+ G++ + A+DRDP + ++ Sbjct: 13 HIPVLLTPILDSVKPISG-IWVDGTFGAGGYSRAILDAGADTLYAIDRDPEVFARAKKWA 71 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 +DY + L TFS L +V + G +DGVV D+GVSSMQ+D +RGFSF K GPLDM Sbjct: 72 KDYDGRLKLIHGTFSDLDTHVKNAGTDLIDGVVLDIGVSSMQLDQAERGFSFMKDGPLDM 131 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RM SG+SA+D+VN K L ++ + GEE+ + RIA IVK R++ F+TT L +I Sbjct: 132 RMGQSGMSAADIVNSVEEKVLADLIYLYGEERASRRIARNIVKSRENLKFETTFQLVKVI 191 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + ++ K + HPATR+FQALRI VN+E+ +L GLR+AE L+ GGLL VV+FHSLED Sbjct: 192 EASLPRPKPGQTHPATRTFQALRIAVNDELGQLVSGLRAAENILREGGLLAVVTFHSLED 251 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHP-AVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 R+VK+F +RSG P + A F+ I +K + ++++ N R+RSAKLR Sbjct: 252 RIVKRFIQARSGNNPRGNRYQPEKTNDIATFEKIGRKAIAANKDEINSNPRARSAKLRLA 311 Query: 315 MRTVERSIEDDSF-VHLPRL 333 R S E +F + LP+ Sbjct: 312 RRLNTTSGEFSAFDIGLPKF 331 >gi|110680542|ref|YP_683549.1| S-adenosyl-methyltransferase, putative [Roseobacter denitrificans OCh 114] gi|123172199|sp|Q163I0|RSMH_ROSDO RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|109456658|gb|ABG32863.1| S-adenosyl-methyltransferase, putative [Roseobacter denitrificans OCh 114] Length = 330 Score = 260 bits (665), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 143/310 (46%), Positives = 192/310 (61%), Gaps = 5/310 (1%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDP 68 ++A T H+PVLL ++ + P G V LD TFGAGGY+R + G++ VIA+DRDP Sbjct: 3 AAATADTTSPHIPVLLPAILDAVAPVQG-VWLDGTFGAGGYTRGLLEAGADRVIAVDRDP 61 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 A + Y + FS++ Y +DGVV DLGVSSMQ+D +RGFSF Sbjct: 62 LAFEMAADWAGSYGTRLVQQPGVFSEMDTYA--VALDGVVLDLGVSSMQLDLAERGFSFM 119 Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 + GPLDMRMS G SA+D+VN+A+ + L IL GEE+ + RIA AI+ R AP TT Sbjct: 120 RDGPLDMRMSQEGPSAADIVNEASAETLANILFQYGEERASRRIAKAILTERALAPITTT 179 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ +I++ + +K + HPATRSFQALRI VN+E EL QGL +AE+ALK GG L VV Sbjct: 180 LHLAGIIERCLPRAKPGQSHPATRSFQALRIAVNDEYGELYQGLMAAERALKPGGQLAVV 239 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPA-VFQSITKKVVVPTQEDVAFNRRSR 307 +FHS+EDR+VK+F +R+G P A F ++K +V +VA N R+R Sbjct: 240 TFHSVEDRMVKRFLTARAGAGGNANRFAPEVQRDAPAFTLRSRKAIVADDAEVAANPRAR 299 Query: 308 SAKLRAGMRT 317 SAKLR +RT Sbjct: 300 SAKLRIAVRT 309 >gi|149914518|ref|ZP_01903048.1| S-adenosyl-methyltransferase MraW [Roseobacter sp. AzwK-3b] gi|149811311|gb|EDM71146.1| S-adenosyl-methyltransferase MraW [Roseobacter sp. AzwK-3b] Length = 331 Score = 259 bits (662), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 139/300 (46%), Positives = 187/300 (62%), Gaps = 5/300 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78 H+PVLL ++ + P G V +D T GAGGY+R + G+ VI +DRDP A+ Sbjct: 14 HIPVLLRPLLEAVAPVEG-VWIDGTLGAGGYTRGLLEAGAQTVIGVDRDPLALEMAALWG 72 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138 Y ++ L Q FS + + D VDGVV DLGVSSMQ+D +RGFSF + GPLDMRMS Sbjct: 73 AAYGDRLVLVQDIFSNMDAHASD--VDGVVLDLGVSSMQLDRAERGFSFMRDGPLDMRMS 130 Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198 G +A+D+VN A+ +L IL + GEE+ + RIA AI++ R S TT L+ +I+ Sbjct: 131 QQGPTAADLVNTADEGELADILYLYGEERASRRIARAILRERASGDIDTTLHLARIIESC 190 Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258 + K ++HPATRSFQALRI VN+E EL GL +AE+ALK GG L VV+FHS+EDR+V Sbjct: 191 LPRPKPGQVHPATRSFQALRIAVNDEFGELVAGLEAAERALKPGGKLAVVTFHSIEDRMV 250 Query: 259 KKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 K+F ++S RH PA F +K + P + ++A N RSRSAKLR +RT Sbjct: 251 KRFLQAKSAGGGGGSRHAPAMRPEPAEFDVTQRKAIGPDKSELAENPRSRSAKLRVAIRT 310 >gi|144897763|emb|CAM74627.1| Bacterial methyltransferase [Magnetospirillum gryphiswaldense MSR-1] Length = 328 Score = 259 bits (662), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 144/304 (47%), Positives = 191/304 (62%), Gaps = 7/304 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78 H+PVLL +V+ L P G V++D TFGAGGYS + V +DRDP A++ GQ Sbjct: 15 HIPVLLAEVVQALAPQDGDVMVDGTFGAGGYSLALLDCARIRVFGIDRDPSAIAAGQRLP 74 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + + S+ + + + +P G VDG+ D+GVSSMQID +RGFSF K GPLDM Sbjct: 75 QAADGRLSVIEGRYGDMDLLLPQAGIARVDGIALDIGVSSMQIDQAERGFSFAKDGPLDM 134 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RM SG SA+DVVN A+ +L I+ LGEEK A R+A AIV R PF T L+++I Sbjct: 135 RMEQSGPSAADVVNTASEAELADIIYHLGEEKYARRVARAIVAARLDTPFTRTLQLANVI 194 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + V S + I P+TR+FQALRI VN+E+ EL +GL +AE+ L GG L VV+FHSLED Sbjct: 195 RGAVRKSGDG-IDPSTRTFQALRIHVNDELGELERGLEAAERLLAPGGRLAVVTFHSLED 253 Query: 256 RLVKKFFASRSGKVMAV-RHMIPSNAHPA-VFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 R+VK F RSG + A RH+ A PA F I++K + P+ + N R+RSAKLRA Sbjct: 254 RVVKTFLKKRSGDMPAPSRHLPAQAAGPAPTFSLISRKAIAPSDAECRANPRARSAKLRA 313 Query: 314 GMRT 317 +RT Sbjct: 314 ALRT 317 >gi|294677904|ref|YP_003578519.1| S-adenosyl-methyltransferase MraW [Rhodobacter capsulatus SB 1003] gi|294476724|gb|ADE86112.1| S-adenosyl-methyltransferase MraW [Rhodobacter capsulatus SB 1003] Length = 338 Score = 258 bits (660), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 144/303 (47%), Positives = 195/303 (64%), Gaps = 6/303 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETM 78 H+PVLL ++ + P G LD TFGAGGY+R G+ VI +DRDP A Sbjct: 8 HIPVLLRPLLQAVAPVLG-TWLDGTFGAGGYARGLLAAGAGRVIGIDRDPLAFEMAAPWR 66 Query: 79 RDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 ++ E+ L + TFS L + +G++GVV DLGVSSMQ+D +RGFSF + GPLDM Sbjct: 67 GEFGERLVLVENTFSNLDAVAAEIAPEGLNGVVLDLGVSSMQLDQAERGFSFLRDGPLDM 126 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RMS SG SA+D+VN A L IL GEE+ + RIA AIV+ R+SAP+++T+ L + I Sbjct: 127 RMSQSGPSAADLVNTAEEGALADILYHYGEERASRRIARAIVEARKSAPYESTKQLVATI 186 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 ++ + K + HPATRSFQALRI VN+E +L GL +AE+ALK GG L VV+FHSLED Sbjct: 187 ERCLPRPKPGQSHPATRSFQALRIAVNDEFGQLIAGLEAAERALKPGGKLAVVTFHSLED 246 Query: 256 RLVKKFFASRSGKVM-AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 R+VK+FF +R+G+ R+ + A F +T+K V P + ++A N R+RSA LR G Sbjct: 247 RVVKRFFQARAGRAPGGSRYAPEAAPEAAAFDLVTRKGVGPDEIELAQNPRARSAILRIG 306 Query: 315 MRT 317 RT Sbjct: 307 ART 309 >gi|298293108|ref|YP_003695047.1| S-adenosyl-methyltransferase MraW [Starkeya novella DSM 506] gi|296929619|gb|ADH90428.1| S-adenosyl-methyltransferase MraW [Starkeya novella DSM 506] Length = 345 Score = 258 bits (660), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 140/302 (46%), Positives = 198/302 (65%), Gaps = 5/302 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETM 78 H+PVLL +V+ L P G + +D TFGAGGY+ + G++VIA+DRDP A+ GQ + Sbjct: 19 HLPVLLAEVVEHLAPKDGGLYIDGTFGAGGYTSAILNAAGTSVIAIDRDPTAIEGGQGLV 78 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + +L FS L + +G VDGVV D+GVSSMQID G+RGFSF++ GPLDM Sbjct: 79 AASGGRLTLVHERFSALDEVAAAQGIDAVDGVVLDIGVSSMQIDEGERGFSFRRDGPLDM 138 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RMS G SA+D+V + + DL ++ GEE+ + +A AIV R+ AP + T L+ ++ Sbjct: 139 RMSSEGPSAADLVAKLSETDLANLIFRFGEERHSRAVARAIVAARKEAPIERTLQLADIV 198 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 K V+ +K + HPATR+FQALRI VN+E+ ELA+ L +AE+ LK GG L+VV+FHSLED Sbjct: 199 AKVVW-AKPHEPHPATRTFQALRIAVNDELGELARALSAAERVLKPGGRLVVVTFHSLED 257 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 R+VK F A+R+ RHM + P F+ + + V P +E++A N R+RS++LRA Sbjct: 258 RIVKTFLANRAKAAAGSRHMPALQSAPPSFKLVARGAVEPGEEELARNPRARSSRLRAAE 317 Query: 316 RT 317 RT Sbjct: 318 RT 319 >gi|304321488|ref|YP_003855131.1| hypothetical protein PB2503_09684 [Parvularcula bermudensis HTCC2503] gi|303300390|gb|ADM09989.1| hypothetical protein PB2503_09684 [Parvularcula bermudensis HTCC2503] Length = 331 Score = 258 bits (660), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 136/299 (45%), Positives = 196/299 (65%), Gaps = 6/299 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H PVLL+ VI L+P PG++++D TFGAGGY+R + G+ +IA DRDP A++ G+ R Sbjct: 5 HQPVLLDAVIDRLSPQPGEILVDGTFGAGGYTRRLLEAGATIIAFDRDPTAIAAGRSLER 64 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 + + +L +A FS L ++V ++GVVFD GVSSMQ+D +RGFSF+ GPLDMRM Sbjct: 65 ECGDALTLVEAPFSALAEHVAPP-INGVVFDFGVSSMQLDRPERGFSFRAEGPLDMRMG- 122 Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199 +G A+D VNQA L + GEE+++ +A IV +R++ PF+TT L+++ + + Sbjct: 123 AGRPAADFVNQAEEAALADVFYHYGEERRSRALARRIVAQRETTPFETTAQLAAVAEAVL 182 Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259 ++IHPATR FQALRI VN+E+ E+ + L +AEK L GG L+ VSFHSLEDR+VK Sbjct: 183 --GTRDKIHPATRMFQALRILVNDELGEIVRALIAAEKVLAEGGRLVAVSFHSLEDRIVK 240 Query: 260 KFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 +FF G+ A RH P + F + K + + ++A N R+RSA+LRAG+RT Sbjct: 241 RFFQVTEGRAQTASRHEPPVDKILPRFAPLGKALSA-DEAEIAGNPRARSARLRAGVRT 298 >gi|182677677|ref|YP_001831823.1| S-adenosyl-methyltransferase MraW [Beijerinckia indica subsp. indica ATCC 9039] gi|263445947|sp|B2IGF2|RSMH_BEII9 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|182633560|gb|ACB94334.1| S-adenosyl-methyltransferase MraW [Beijerinckia indica subsp. indica ATCC 9039] Length = 355 Score = 258 bits (659), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 148/305 (48%), Positives = 197/305 (64%), Gaps = 7/305 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF-CKMGSNVIALDRDPFAVSCGQETM 78 HVPVL E+V+A L+ G LDATFGAGGY+R+ + ++V+A+DRDP A++ G+ Sbjct: 19 HVPVLREEVVAALDCKKGGFYLDATFGAGGYTRALLAEPETHVLAIDRDPEAIAAGRALE 78 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + + L FS L D +G+ DG+VFD+GVSSMQ+D +RGFSF+ GPLDM Sbjct: 79 AESAGRLILAHGRFSTLADIAAAEGIPAFDGIVFDIGVSSMQLDQPERGFSFRGEGPLDM 138 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RM G SA+D+VN A+ + L I GEE+ + RIA AIV R PF TT+ L+ LI Sbjct: 139 RMESRGPSAADLVNTADEQRLADIFYYFGEERASRRIARAIVTDRAHTPFTTTRQLAELI 198 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + V K IHPATR FQALRI VN E+ EL + L +AE L+ GG L+VV+FHSLED Sbjct: 199 AR-VNPGKPGDIHPATRVFQALRIAVNEELLELVRALAAAEALLREGGRLVVVTFHSLED 257 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNA--HPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 R+VK+F A+RSG+ AV +P P F K+ V+P+ E++A N R+RSAKLR Sbjct: 258 RIVKQFLAARSGRGQAVSRPLPGEPALAPPTFILPGKQPVLPSPEEIAVNPRARSAKLRF 317 Query: 314 GMRTV 318 G+RT Sbjct: 318 GLRTA 322 >gi|85707758|ref|ZP_01038824.1| S-adenosyl-methyltransferase [Erythrobacter sp. NAP1] gi|85689292|gb|EAQ29295.1| S-adenosyl-methyltransferase [Erythrobacter sp. NAP1] Length = 313 Score = 258 bits (659), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 138/303 (45%), Positives = 195/303 (64%), Gaps = 9/303 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H PVLL++V+A + P+P I+DATFGAGGYSR+ + G+ V A DRDP A+ GQ + Sbjct: 5 HTPVLLDEVVAAIQPSPDMAIIDATFGAGGYSRALLEKGARVYAFDRDPNAIRDGQGMVA 64 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 ++ + SL FS +++ + GV D VV D+GVSSMQ+D G+RGF+F GPLDMR Sbjct: 65 EFDGRLSLHAERFSSMREEMTRIGVPQVDAVVMDIGVSSMQLDQGERGFAFSADGPLDMR 124 Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 MS +G SA+D +N A+ + +L GEE+Q+ R+A AIV R P +TT DL+ +++ Sbjct: 125 MSQAGESAADFLNTADEAAIADVLYQYGEERQSRRVARAIVAAR---PLETTGDLARVVR 181 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 K + +++ PATRSFQA+RI VN+E+ EL GL +AE L+ GG+L VVSFHSLEDR Sbjct: 182 KALGHKPHDKKDPATRSFQAVRIHVNDELGELRAGLNAAETLLREGGVLAVVSFHSLEDR 241 Query: 257 LVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 +VK+F SG AV +P P F ++ K + P+ ++ N RSRS+ LR Sbjct: 242 IVKRFLKEASGAGRAVSRHLPGEVPGPPPTFTRVS-KAIRPSGAEIERNPRSRSSILRHA 300 Query: 315 MRT 317 +RT Sbjct: 301 IRT 303 >gi|254441632|ref|ZP_05055125.1| S-adenosyl-methyltransferase MraW [Octadecabacter antarcticus 307] gi|198251710|gb|EDY76025.1| S-adenosyl-methyltransferase MraW [Octadecabacter antarcticus 307] Length = 325 Score = 258 bits (658), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 148/318 (46%), Positives = 196/318 (61%), Gaps = 10/318 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETM 78 H+PVL+ +IA +P G LDATFGAGGY++ G++ VI +DRDP Q Sbjct: 10 HIPVLIGPLIAACSPISG-TWLDATFGAGGYTQRLLAAGADKVIGVDRDPAVFKMAQWAA 68 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138 + +L + TFS L D +DG+V DLGVSSMQID +RGFSF + GPLDMRM Sbjct: 69 DN--PAITLVEDTFSNLDTIASD--LDGIVLDLGVSSMQIDQAERGFSFMRDGPLDMRMG 124 Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198 G SA+D+VN+A+ DL IL I GEE+ + RIA IV++R P TT L+ LI+ Sbjct: 125 QEGQSAADIVNEADETDLADILYIYGEERASRRIARKIVEQRDREPITTTLRLAKLIEGC 184 Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258 + SK + HPATRSFQA+RI VN+E +LA+GL +AE+ALK GG L +V+FHS+EDR+V Sbjct: 185 LPRSKQGQSHPATRSFQAIRIAVNDEYGQLAEGLEAAERALKPGGYLAIVTFHSVEDRMV 244 Query: 259 KKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 K+F R G + P P+ F+ ITKK +++VA N RSRSAKLR R Sbjct: 245 KRFLQQRGGGMGNANRYSPVLETEKPS-FEIITKKAKAADEDEVAQNPRSRSAKLRVARR 303 Query: 317 T-VERSIEDDSFVHLPRL 333 T D S + +P+L Sbjct: 304 TDAPAGALDRSKIGMPQL 321 >gi|84501746|ref|ZP_00999918.1| S-adenosyl-methyltransferase MraW [Oceanicola batsensis HTCC2597] gi|84390367|gb|EAQ02926.1| S-adenosyl-methyltransferase MraW [Oceanicola batsensis HTCC2597] Length = 331 Score = 257 bits (657), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 138/313 (44%), Positives = 193/313 (61%), Gaps = 4/313 (1%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRD 67 M+++ H+PVLL +I + P G LD TFGAGGY+R + G+ VI +DRD Sbjct: 1 MAASAPSPDAPHIPVLLRPLIDRVAPVAG-TWLDGTFGAGGYARGLLEAGAEKVIGVDRD 59 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 P A+ + D + + Q F++L D + + +DGVV DLGVSSMQ+D +RGFSF Sbjct: 60 PLALEMAGGWIGDCAGKLEIRQGNFAEL-DRIAGEMLDGVVLDLGVSSMQLDLAERGFSF 118 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 K GPLDMRMS G SA+D+VN DL ++ + GEE+ + RIA AIV+ R AP T Sbjct: 119 MKDGPLDMRMSQEGPSAADLVNTMAEGDLADVIYLYGEERASRRIARAIVRERAEAPIAT 178 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T L+ +++ + +K + HPATR+FQALRI VN+E LA+GL +AE+AL+ GG L V Sbjct: 179 TLRLAGIVEGCLPRAKPGQSHPATRTFQALRIAVNDEYGALAEGLMAAERALRPGGQLAV 238 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRS 306 V+FHS+EDR+VK+F RSG+ P F +T+K V P ++++ N R+ Sbjct: 239 VTFHSVEDRMVKRFLQLRSGRAGRANRFAPEAPEDKPRFTIVTRKAVGPDEDELEVNPRA 298 Query: 307 RSAKLRAGMRTVE 319 RSA+LR RT E Sbjct: 299 RSARLRVARRTEE 311 >gi|84686327|ref|ZP_01014221.1| methyltransferase MraW/YabC [Maritimibacter alkaliphilus HTCC2654] gi|84665510|gb|EAQ11986.1| methyltransferase MraW/YabC [Rhodobacterales bacterium HTCC2654] Length = 330 Score = 257 bits (657), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 146/329 (44%), Positives = 203/329 (61%), Gaps = 17/329 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETM 78 H+PVLL ++ + P G V +D TFGAG Y+R + G+ VI +DRDP A + + Sbjct: 12 HIPVLLRPLLETVAPVSG-VWIDGTFGAGSYARGLVEAGAETVIGIDRDPLAHEMAEGWL 70 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138 DY + L + TFS + + D VDGVV DLGVSSMQ+D +RGFSF + GPLDMRMS Sbjct: 71 ADYDGRIRLERGTFSDMDEIAGDP-VDGVVLDLGVSSMQLDLAERGFSFMRDGPLDMRMS 129 Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198 G +A+D+VN+A ++L IL GEE+ + RIA IV+ R++ F+TT L+ ++K Sbjct: 130 QEGPTAADLVNEAPEEELADILYHYGEERASRRIARQIVRAREAESFKTTAQLAETVEKC 189 Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258 + K + HPATRSFQA+RI VN+E +LA+GL +AE+ALK GG L VV+FHSLEDR+V Sbjct: 190 LPRPKPGQSHPATRSFQAIRIAVNDEFGQLAEGLEAAERALKPGGKLAVVTFHSLEDRVV 249 Query: 259 KKFF---ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 K+F AS G R+ + H F ++ + P +E++A N R+RS++LR Sbjct: 250 KRFLQLAASTGGG--GSRYAPAAEDHTPRFDLTPRRAIAPDEEELAENPRARSSRLRVAT 307 Query: 316 RT---VERSIEDDSFVHLPRLPTLSQFRG 341 RT ER+ D S + LP FRG Sbjct: 308 RTDAPAERT--DRSKLGLP----APAFRG 330 >gi|170738613|ref|YP_001767268.1| S-adenosyl-methyltransferase MraW [Methylobacterium sp. 4-46] gi|263456469|sp|B0UFI0|RSMH_METS4 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|168192887|gb|ACA14834.1| S-adenosyl-methyltransferase MraW [Methylobacterium sp. 4-46] Length = 337 Score = 257 bits (656), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 148/307 (48%), Positives = 199/307 (64%), Gaps = 10/307 (3%) Query: 20 HVPVLLEKV--IALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQ 75 H+PVLL +V + L PG V++D TFGAGGYSR+ + VIA+DRDP AV+ GQ Sbjct: 6 HIPVLLAEVRGVLRLGEGPG-VVVDGTFGAGGYSRALLAADPDLRVIAIDRDPTAVAAGQ 64 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + L Q F L V +GV DGVV D+GVSSMQ+D +RGFSF+ GP Sbjct: 65 ELAAAAGGRLRLVQGRFGDLDAIVRREGVEAVDGVVLDIGVSSMQLDRAERGFSFRADGP 124 Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 LDMRM +G SA+D+VN A +L I+ GEE+++ +A AI++ R+ AP TT L+ Sbjct: 125 LDMRMEGAGTSAADLVNGAPEAELADIIYHFGEERRSRAVARAILEARRRAPIATTGALA 184 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++ V + IHPATR+FQALRI VN+E+ EL + L +AE+ L+ GG L VV+FHS Sbjct: 185 EIVAGVVRAEPGSGIHPATRTFQALRIAVNDELGELNRALHAAERILRPGGRLAVVTFHS 244 Query: 253 LEDRLVKKFFASRSGK-VMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 LEDR+VK+FF++RSG+ V A RH+ + P F +TK V P++ + A N R+RSAK Sbjct: 245 LEDRIVKQFFSARSGRAVSASRHLPMAERPVPRSFTLVTKGPVGPSEAEAAANPRARSAK 304 Query: 311 LRAGMRT 317 LRAG RT Sbjct: 305 LRAGERT 311 >gi|209884374|ref|YP_002288231.1| S-adenosyl-methyltransferase MraW [Oligotropha carboxidovorans OM5] gi|262824708|sp|B6JCF0|RSMH_OLICO RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|209872570|gb|ACI92366.1| S-adenosyl-methyltransferase MraW [Oligotropha carboxidovorans OM5] Length = 333 Score = 256 bits (654), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 147/332 (44%), Positives = 208/332 (62%), Gaps = 9/332 (2%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRD 67 MS+A+ H+ VL + + L P G + +DATFGAGGYSR + G+ VI +DRD Sbjct: 1 MSAAVSR----HISVLGREAVEFLAPRAGGIYVDATFGAGGYSRRILAVAGARVIGIDRD 56 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRG 124 A++ + + + + +L Q FSQL + + VDG+V D+GVSSMQ+D +RG Sbjct: 57 RTAIAEAFDLVEQAEGRLTLVQDRFSQLDEVCASQNAPQVDGIVMDIGVSSMQLDRAERG 116 Query: 125 FSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 FSF++ GPLDMRM G SA+DVV A+ KDL I+ I GEE+ + +A AIV+ RQ P Sbjct: 117 FSFRQDGPLDMRMGQEGASAADVVAVASEKDLANIIYIFGEERHSRAVARAIVRARQEKP 176 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 TT+ L+ ++ V+ ++ N IHPATR+FQALRIFVN E++EL L ++E+ LK GG Sbjct: 177 ILTTKVLADIVASVVH-TRPNDIHPATRTFQALRIFVNEELDELQSALHASERTLKPGGR 235 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 L+VV+FHSLEDR+VK F +R+ + RHM F+ +TK+ VV + ++A N Sbjct: 236 LVVVTFHSLEDRIVKNFINARASRGGGSRHMPDVERTAPSFEILTKRPVVADENEIAANP 295 Query: 305 RSRSAKLRAGMRTVERSIEDDSFVHLPRLPTL 336 R+RSAKLRA RT S + D+ P L T+ Sbjct: 296 RARSAKLRAAERTANASHDADTSFDWPTLRTV 327 >gi|148556856|ref|YP_001264438.1| S-adenosyl-methyltransferase MraW [Sphingomonas wittichii RW1] gi|262826617|sp|A5VDD4|RSMH_SPHWW RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|148502046|gb|ABQ70300.1| S-adenosyl-methyltransferase MraW [Sphingomonas wittichii RW1] Length = 322 Score = 256 bits (653), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 140/310 (45%), Positives = 199/310 (64%), Gaps = 12/310 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQ 75 T HVPVL+++VIA L PA G+ +D TFGAGGY+R+ + G+ V A DRDP A++ G+ Sbjct: 3 TTAPHVPVLIDEVIAGLEPATGETHVDGTFGAGGYTRALLQAGARVYAFDRDPDAIAEGR 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + L FS++ + + ++G VDGV D+GVSSMQ+D DRGFSFQ GP Sbjct: 63 ALEDGQDGRLILVPERFSRMAEALNERGIDQVDGVTLDIGVSSMQLDRADRGFSFQADGP 122 Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 LDMRM SG+SA+D VN A+ ++ +L LGEE +A R+A AIV Q+ P T +L+ Sbjct: 123 LDMRMEKSGMSAADFVNTADEAEIADVLHDLGEEPRARRVARAIV---QARPITRTSELA 179 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++++ + + + PATR+FQA+RI +N E++EL QGL +AE+ L+ GG L VVSFHS Sbjct: 180 EVVRRALGHKPHEKKDPATRTFQAIRIHLNAELDELEQGLAAAERVLRPGGRLAVVSFHS 239 Query: 253 LEDRLVKKFFASRSGKVMA-VRHMIPSNA---HPAVFQSITKKVVVPTQEDVAFNRRSRS 308 +EDR+VK+F RSG A RH+ + A P+ F+++ K V + ++A N RSRS Sbjct: 240 IEDRIVKRFLRDRSGATPAGSRHLPDARAGGPRPS-FEAVAKPVRA-GEAELARNPRSRS 297 Query: 309 AKLRAGMRTV 318 A LR RT Sbjct: 298 ATLRVARRTA 307 >gi|260576880|ref|ZP_05844863.1| S-adenosyl-methyltransferase MraW [Rhodobacter sp. SW2] gi|259020917|gb|EEW24230.1| S-adenosyl-methyltransferase MraW [Rhodobacter sp. SW2] Length = 334 Score = 256 bits (653), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 145/300 (48%), Positives = 186/300 (62%), Gaps = 4/300 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78 HVPVLL ++A + P G V LD TFGAGGY+R G+ VI +DRDP A+ Sbjct: 11 HVPVLLRPLLAAVAPVQG-VWLDGTFGAGGYARGLLAAGAAKVIGIDRDPLALQMAAAWA 69 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138 +Y ++ L FS+L D + + +DG+V DLGVSSMQ+D +RGFSF + GPLDMRMS Sbjct: 70 GEYGDRLRLVAGNFSEL-DVLAGEPLDGIVLDLGVSSMQLDLPERGFSFLRDGPLDMRMS 128 Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198 G SA+D+VN L IL GEE+ + RIA AIV R AP TT L+ ++ Sbjct: 129 QQGDSAADIVNATEEGALADILYTYGEERASRRIAKAIVAARAIAPITTTLRLAEIVAGC 188 Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258 + K + H ATRSFQA+RI VN E EL +GL +AE+ALK GGLL VV+FHSLEDR+V Sbjct: 189 LPRPKPGQSHAATRSFQAIRIAVNTEFSELVEGLAAAERALKPGGLLAVVTFHSLEDRIV 248 Query: 259 KKFFASRSGKVMAVRHMIPSNAHPAV-FQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 K+FF RSG P+ A A F +T++ V P ++A N R+RSAKLR G RT Sbjct: 249 KRFFQLRSGNEANANRYAPAKAEDAPRFDLVTRRAVAPDDAELAENPRARSAKLRVGRRT 308 >gi|114327101|ref|YP_744258.1| S-adenosyl-methyltransferase MraW [Granulibacter bethesdensis CGDNIH1] gi|122327917|sp|Q0BV17|RSMH_GRABC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|114315275|gb|ABI61335.1| S-adenosyl-methyltransferase mraW [Granulibacter bethesdensis CGDNIH1] Length = 334 Score = 255 bits (652), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 143/312 (45%), Positives = 192/312 (61%), Gaps = 11/312 (3%) Query: 11 SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDP 68 S H + G HVPVLL +V+ L+PAPG V LD TFG GGY+R+ S V A+DRDP Sbjct: 15 SGGHSSTGTHVPVLLNEVLETLSPAPGGVFLDGTFGGGGYTRAILDTAEDSTVWAVDRDP 74 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGF 125 A++ G+ Y+ + L Q FSQ+ + D+GV DG+V D+GVSS QID DRGF Sbjct: 75 AAITRGEALAARYRGRLHLIQGNFSQMASLLTDRGVNALDGIVLDIGVSSFQIDDPDRGF 134 Query: 126 SFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 SF+ GPLDMRM+ G SA+D++ + ++ IL LGEE+++ +IA AIV R P Sbjct: 135 SFRTDGPLDMRMAGEGTSAADLIARLPEAEIANILYELGEERKSRQIARAIVSARAEEPI 194 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT L+S+I+ V ++ I PATRSFQALRI VN+E+ EL + L+ A L+ GG L Sbjct: 195 TTTGRLASIIRCVVPPDRSG-IDPATRSFQALRIAVNDELGELERALQQATNLLQPGGRL 253 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP----SNAHPAVFQSITKKVVVPTQEDVA 301 ++VSFHSLEDR+VK+F +G + P + P F+ IT K V P + Sbjct: 254 VIVSFHSLEDRIVKRFMNDAAGNAPSPSRYDPRGLVARTEPR-FRLITSKAVRPGTAEQN 312 Query: 302 FNRRSRSAKLRA 313 N RSRSA+LRA Sbjct: 313 ANPRSRSARLRA 324 >gi|188584364|ref|YP_001927809.1| S-adenosyl-methyltransferase MraW [Methylobacterium populi BJ001] gi|263456461|sp|B1Z8U3|RSMH_METPB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|179347862|gb|ACB83274.1| S-adenosyl-methyltransferase MraW [Methylobacterium populi BJ001] Length = 351 Score = 255 bits (651), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 137/289 (47%), Positives = 183/289 (63%), Gaps = 8/289 (2%) Query: 36 PGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQFSLFQATFS 93 PG + +D TFGAGGY+R+ + G + VIA+DRDP A+ G + + + L Q F Sbjct: 37 PG-LAVDGTFGAGGYTRALLESGPDMRVIAIDRDPTAIRAGADLVEGAGGRLRLVQGRFG 95 Query: 94 QLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQ 150 L + D+G D VV D+GVSSMQ+D RGFSF++ GPLDMRM G SA+D+VN Sbjct: 96 DLDTLLADQGEAQADWVVLDIGVSSMQLDEAHRGFSFRQDGPLDMRMGGEGPSAADLVNG 155 Query: 151 ANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPA 210 L IL GEE+++ +A AIV+ R+ AP TT L+ LI V + IHPA Sbjct: 156 EEESTLADILYHFGEERRSRAVARAIVEARRRAPIATTAQLADLIAGVVRPEPGSPIHPA 215 Query: 211 TRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVM 270 TRSFQ LRI VN+E+ EL +GL +AE+ LK GG L VV+FHSLEDR+VK+FF++RSG+ Sbjct: 216 TRSFQGLRIAVNDELGELVRGLHAAERVLKPGGRLAVVTFHSLEDRIVKQFFSARSGRAA 275 Query: 271 AVRHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 +P PA F+ +TK V+P++ + N R+RSAKLRAG RT Sbjct: 276 QASRHLPGVERPAPKSFRLVTKGPVLPSEAETEVNPRARSAKLRAGERT 324 >gi|83592294|ref|YP_426046.1| s-adenosyl-methyltransferase MraW [Rhodospirillum rubrum ATCC 11170] gi|123753270|sp|Q2RVT6|RSMH_RHORT RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|83575208|gb|ABC21759.1| methyltransferase [Rhodospirillum rubrum ATCC 11170] Length = 326 Score = 254 bits (649), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 140/308 (45%), Positives = 194/308 (62%), Gaps = 11/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78 H PV+L++V++ L P + +D TFG GGYSR + VIA+DRDP A G Sbjct: 7 HFPVMLDEVLSALEPHADGLYVDGTFGNGGYSRGLLERADCRVIAIDRDPAARVRGAALE 66 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 ++ +F+L F ++ + +G+ DGV DLGVSSMQ+D +RGFSFQK GPLDM Sbjct: 67 AEFPGRFTLLSGCFGDMEQLLAAEGISRIDGVALDLGVSSMQLDQAERGFSFQKDGPLDM 126 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RM G +A+D+VN + L IL GEE+++ +AHAIV+RR PF T DL+++I Sbjct: 127 RMGQQGQTAADLVNTLDEDRLADILYHYGEERKSRWVAHAIVERRAETPFSRTADLATVI 186 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + V S++ I PATRSFQALRI VN+E+ EL + L ++E+ L+AGG L+VV+FHSLED Sbjct: 187 RGVVRKSRDG-IDPATRSFQALRIVVNDELGELERALGASERLLRAGGRLVVVAFHSLED 245 Query: 256 RLVKKFFASRSGKVMAVRHMIP--SNAH----PAVFQSITKKVVVPTQEDVAFNRRSRSA 309 R+VK F R G+ V +P SNA P FQ+++++ V P + N RSRSA Sbjct: 246 RIVKAFVRQRCGESEGVSRHLPQASNAGAGNPPPSFQAVSRRAVKPLDAETRVNPRSRSA 305 Query: 310 KLRAGMRT 317 +LRA RT Sbjct: 306 RLRAVERT 313 >gi|154245796|ref|YP_001416754.1| S-adenosyl-methyltransferase MraW [Xanthobacter autotrophicus Py2] gi|263504945|sp|A7IGF4|RSMH_XANP2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|154159881|gb|ABS67097.1| S-adenosyl-methyltransferase MraW [Xanthobacter autotrophicus Py2] Length = 345 Score = 254 bits (649), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 136/305 (44%), Positives = 191/305 (62%), Gaps = 11/305 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78 H+PV+L +V+A L P +D TFGAGGY+R V+A+DRDP A++ G + + Sbjct: 19 HLPVMLAEVLAHLAPKDAGRYVDGTFGAGGYTRGILNAADCRVLAIDRDPTAIAAGADLV 78 Query: 79 RDYKEQFSLFQATFSQL------QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + +L FS+L D+ P +DGVV D+GVSSMQ+D +RGFSF++ GP Sbjct: 79 AEAAGRLTLVNDRFSRLDAVAQEHDFSP---LDGVVLDIGVSSMQLDQAERGFSFRRDGP 135 Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 LDMRM +G SA+D+V + L ++ LGEE+ + IA AIVK R +P T L+ Sbjct: 136 LDMRMGDTGPSAADLVATLDEVQLAHLIWSLGEERHSRPIARAIVKARDESPITRTAQLA 195 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++ + V+ K +HPATR+FQALRI VN E+ EL Q L +AE+AL GG L+VV+FHS Sbjct: 196 EIVSRIVW-QKPGEMHPATRTFQALRIAVNEELSELVQALVAAERALAPGGRLVVVTFHS 254 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK F ++R+ A RH+ + F+ + K VV P ++VA N R+RSAKLR Sbjct: 255 LEDRIVKTFLSNRAKAPSASRHLPQAEGPEPAFRLVAKGVVEPGPDEVAGNPRARSAKLR 314 Query: 313 AGMRT 317 A RT Sbjct: 315 AAERT 319 >gi|146342506|ref|YP_001207554.1| S-adenosyl-methyltransferase MraW [Bradyrhizobium sp. ORS278] gi|263445831|sp|A4YZL1|RSMH_BRASO RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|146195312|emb|CAL79337.1| S-adenosyl-dependent methyl transferase [Bradyrhizobium sp. ORS278] Length = 331 Score = 253 bits (647), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 141/318 (44%), Positives = 193/318 (60%), Gaps = 5/318 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSNVIALDRDPFAVSCGQETM 78 H+PVL + +A+L P G +DATFGAGGY+R G+ VIA+DRD A++ G + + Sbjct: 8 HIPVLGPEAVAMLAPRDGGTYVDATFGAGGYTRLILATPGTRVIAIDRDSTAIAGGADLV 67 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + + +L ++ FS L + + V DG+V D+GVSSMQ+D RGFSF+ GPLDM Sbjct: 68 GEANGRLTLVESRFSALAEICAAQAVGQVDGIVMDVGVSSMQLDTAARGFSFRFDGPLDM 127 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RM+ +G SA+DV+ QA+ +DL ++ I GEE+ + IA AIV R+ TT+ L+ ++ Sbjct: 128 RMADTGPSAADVIAQASERDLADVIYIFGEERHSRGIARAIVAARKEQQITTTRQLADIV 187 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + V SK IHPATR+FQALRI VN E++EL Q L +AE+ L G L VVSFHSLED Sbjct: 188 ARVVR-SKPGDIHPATRTFQALRILVNEELDELEQALSAAERILPPSGRLAVVSFHSLED 246 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 R+VK F A RS RH+ FQ + +K VV + + N R+RSAKLR Sbjct: 247 RIVKTFLAERSKIGGGSRHLPEIAQQAPSFQLLNRKPVVADEAETVANPRARSAKLRGAA 306 Query: 316 RTVERSIEDDSFVHLPRL 333 RT + S PRL Sbjct: 307 RTTAPAHPPSSSSAWPRL 324 >gi|23012863|ref|ZP_00052852.1| COG0275: Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Magnetospirillum magnetotacticum MS-1] Length = 319 Score = 253 bits (646), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 141/305 (46%), Positives = 191/305 (62%), Gaps = 8/305 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78 H+PVLL +VIA L P G +D TFGAGGYSR+ + +V A+DRDP AV+ G+ Sbjct: 7 HIPVLLTEVIAALAPRDGGAYVDGTFGAGGYSRAILSAAACHVHAIDRDPSAVARGKTLE 66 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 +FS+ + F + + ++GV DG+ D+GVSSMQID +RGFSF K GPLDM Sbjct: 67 EASAGRFSMIEGRFGDMAALLRERGVNQVDGIALDIGVSSMQIDQPERGFSFAKDGPLDM 126 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RM G SA+D+VN +L I+ GEE+ + R+A AIV+ R+ F+ T +L+ +I Sbjct: 127 RMETKGPSAADMVNDTPEGELANIIYRYGEERLSRRVAKAIVEARRIKRFERTGELAEVI 186 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 ++ V S + I PATR+FQALRI VN+E+ EL +GL +AE L GG L VV+FHSLED Sbjct: 187 RRVVPRSGDG-IDPATRTFQALRIAVNDELGELERGLEAAEHLLAPGGHLAVVTFHSLED 245 Query: 256 RLVKKFFASRSGKVMAVRHMIP---SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 R+VK F SRSG+ +P N A F +++K + P QE+ N R+RSAKLR Sbjct: 246 RVVKSFLKSRSGEASRPSRHVPQAQDNGPAASFTLLSRKAIAPGQEESRANPRARSAKLR 305 Query: 313 AGMRT 317 A RT Sbjct: 306 AAART 310 >gi|149186210|ref|ZP_01864524.1| S-adenosyl-methyltransferase [Erythrobacter sp. SD-21] gi|148830241|gb|EDL48678.1| S-adenosyl-methyltransferase [Erythrobacter sp. SD-21] Length = 312 Score = 253 bits (646), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 136/304 (44%), Positives = 197/304 (64%), Gaps = 11/304 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+PVLL++V+ LNP PG V++DATFGAGGY+R+ + G+ V A DRDP A++ G+ T R Sbjct: 6 HIPVLLDEVVEALNPQPGDVLIDATFGAGGYTRALLERGATVHAFDRDPDAIASGR-TWR 64 Query: 80 DYKE---QFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + ++ + L FS++ + + GV DGVV D+GVSSMQ+D RGF+F GPL Sbjct: 65 ETEQTPPRLILHPHRFSEMLEVMRAAGVERVDGVVMDIGVSSMQLDQAHRGFAFSADGPL 124 Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 DMRMS G SA+D +N A + ++ GEE+Q+ R+A AIV R P +TT DL+ Sbjct: 125 DMRMSQDGESAADFLNTAAESTIADVVYQYGEERQSRRVARAIVAAR---PLETTGDLAR 181 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 +++K + +++ PATR+FQA+RI VN E++EL+QGL +AE L+ GG L VVSFHSL Sbjct: 182 VVRKALGHKPHDKKDPATRTFQAIRIHVNGELDELSQGLSAAEHLLREGGRLAVVSFHSL 241 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 EDR+VK+F S RH+ + VF ++ K + PT+ ++ N R+RS+ LR Sbjct: 242 EDRIVKRFLREASSTPSGSRHVPMAAQVDPVFSPVS-KAIKPTEAEIDRNPRARSSVLRH 300 Query: 314 GMRT 317 +RT Sbjct: 301 AVRT 304 >gi|83949459|ref|ZP_00958192.1| S-adenosyl-methyltransferase MraW [Roseovarius nubinhibens ISM] gi|83837358|gb|EAP76654.1| S-adenosyl-methyltransferase MraW [Roseovarius nubinhibens ISM] Length = 314 Score = 253 bits (645), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 138/296 (46%), Positives = 187/296 (63%), Gaps = 5/296 (1%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYK 82 ++E +IA + P G LD T GAGGY+R G++ VI +DRDP A + +Y Sbjct: 1 MIEPLIAEVAPVTG-TWLDGTLGAGGYTRYLLAAGADKVIGVDRDPLAHDLAAQWGAEYG 59 Query: 83 EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI 142 ++ L + FS++ DY D +DGVV DLGVSSMQ+D RGFSFQK GPLDMRMS G Sbjct: 60 DRLELVRGVFSKMDDYATD--LDGVVLDLGVSSMQLDQPMRGFSFQKDGPLDMRMSQEGE 117 Query: 143 SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS 202 +A+ +VN A+ DL IL + GEE+ + RIA AIV+ R+ A TT LS +++K + Sbjct: 118 TAAHIVNSADEGDLADILFLYGEERASRRIARAIVRAREEAAIVTTLQLSEIVEKCLPRP 177 Query: 203 KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF 262 K + HPATRSFQALRI VN+E ELA+GL +AE+ALK GG L VV+FHS+EDR+VK+F Sbjct: 178 KPGQAHPATRSFQALRIAVNDEYGELAEGLAAAERALKPGGKLAVVTFHSIEDRMVKRFI 237 Query: 263 ASR-SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 SR G RH + F +++K ++ ++ N R+RSA+LR RT Sbjct: 238 QSRLGGAGRGSRHAPETIEVAPQFTQVSRKATSASEAEIDRNPRARSARLRVATRT 293 >gi|254451868|ref|ZP_05065305.1| S-adenosyl-methyltransferase MraW [Octadecabacter antarcticus 238] gi|198266274|gb|EDY90544.1| S-adenosyl-methyltransferase MraW [Octadecabacter antarcticus 238] Length = 325 Score = 252 bits (643), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 142/301 (47%), Positives = 184/301 (61%), Gaps = 9/301 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETM 78 H+PVL+ +IA +P G LD TFG GGY++ G+N VI +DRDP Q + Sbjct: 10 HIPVLIGPLIAACSPISG-TWLDGTFGVGGYTQRLLDAGANKVIGVDRDPAVFKMAQWAV 68 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138 + L + TFS L D +DG+V DLGVSSMQID +RGFSF + GPLDMRM Sbjct: 69 DN--PAVELVEDTFSNLDAVASD--LDGIVLDLGVSSMQIDQAERGFSFMRDGPLDMRMG 124 Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198 G SA+D+VN+ + DL IL GEE+ + RIA IV++R P TT L+ LI+ Sbjct: 125 QEGRSAADIVNETDETDLADILYTYGEERASRRIARKIVEQRDREPITTTLRLAKLIEGC 184 Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258 + SK + HPATRSFQA+RI VN+E +LA+GL +AE+ALK GG L VV+FHS+EDR+V Sbjct: 185 LPRSKQGQSHPATRSFQAIRIAVNDEYGQLAEGLEAAERALKTGGYLAVVTFHSVEDRMV 244 Query: 259 KKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 K+F R G + P PA F+ +TKK ++VA N RSRSAKLR R Sbjct: 245 KRFLQQRGGGMGNANRYSPVLETEKPA-FEIVTKKARAADDDEVAQNPRSRSAKLRVARR 303 Query: 317 T 317 T Sbjct: 304 T 304 >gi|170748783|ref|YP_001755043.1| S-adenosyl-methyltransferase MraW [Methylobacterium radiotolerans JCM 2831] gi|263456464|sp|B1LYT9|RSMH_METRJ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|170655305|gb|ACB24360.1| S-adenosyl-methyltransferase MraW [Methylobacterium radiotolerans JCM 2831] Length = 353 Score = 251 bits (642), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 135/305 (44%), Positives = 189/305 (61%), Gaps = 8/305 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQET 77 HVPVLL +V+ L G +D TFGAGGY+R+ V+A+DRDP A++ GQ Sbjct: 24 HVPVLLAEVVEALG-TEGGTAVDGTFGAGGYTRALLAADPALQVVAIDRDPTAIAGGQAL 82 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + + + L F L + + G VD VV D+GVSSMQ+D +RGFSF+ GPLD Sbjct: 83 VAESGGRLRLLPGRFGDLDGLLAEAGIAQVDRVVLDIGVSSMQLDAPERGFSFRSDGPLD 142 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRM+C G SA+D+VN+A+ L I+ GEE+++ +A I++ R+ +TT L+ L Sbjct: 143 MRMACDGPSAADLVNEADETVLADIIYHFGEERRSRAVARTILEARRRGRIETTAQLAEL 202 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 + V + IHPATR+FQ LRI VN+E+ EL + L +AE+ L+ GG L VV+FHSLE Sbjct: 203 VAGVVRTEPGSHIHPATRTFQGLRIAVNDELGELVRALHAAERVLRPGGRLAVVTFHSLE 262 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRSAKLR 312 DR+VK+FFA+RSG+ +P V F+ +TK V+P + + A N R+RSAKLR Sbjct: 263 DRIVKQFFAARSGRSAQGSRHLPGGPVETVRSFRPVTKGPVLPGEAETARNPRARSAKLR 322 Query: 313 AGMRT 317 A RT Sbjct: 323 AAERT 327 >gi|163732141|ref|ZP_02139587.1| S-adenosyl-methyltransferase, putative [Roseobacter litoralis Och 149] gi|161394439|gb|EDQ18762.1| S-adenosyl-methyltransferase, putative [Roseobacter litoralis Och 149] Length = 330 Score = 251 bits (642), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 139/300 (46%), Positives = 186/300 (62%), Gaps = 5/300 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETM 78 H+PVLL ++ + P G LD TFGAGGY+R + G++ VIA+DRDP A + Sbjct: 13 HIPVLLSAILDAVAPVHGD-WLDGTFGAGGYTRGLLEAGADRVIAVDRDPLAFEMAADWA 71 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138 Y + FS++ Y +DGVV DLGVSSMQ+D +RGFSF + GPLDMRMS Sbjct: 72 DAYGARLVQQLGVFSKMDTYA--DALDGVVLDLGVSSMQLDLAERGFSFMRDGPLDMRMS 129 Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198 G SA+D+VN+A+ + + IL GEE+ + RIA AI+ R AP TT L+ +I++ Sbjct: 130 QEGPSAADIVNEASAETIANILFQYGEERASRRIAKAILTERAIAPITTTLHLAGIIERC 189 Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258 + SK + H ATRSFQALRI VN+E EL QGL +AE+ALK GG L VV+FHS+EDR+V Sbjct: 190 LPRSKPGQSHAATRSFQALRIAVNDEYGELYQGLMAAERALKPGGQLAVVTFHSVEDRMV 249 Query: 259 KKFFASRSGKVMAVRHMIPSNAHPA-VFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 K+F +R+G P A F ++K +V +VA N R+RSAKLR +RT Sbjct: 250 KRFLTARAGAGGNANRFAPEVQRDAPAFTLRSRKAIVADYAEVAANPRARSAKLRIAVRT 309 >gi|254460590|ref|ZP_05074006.1| S-adenosyl-methyltransferase MraW [Rhodobacterales bacterium HTCC2083] gi|206677179|gb|EDZ41666.1| S-adenosyl-methyltransferase MraW [Rhodobacteraceae bacterium HTCC2083] Length = 327 Score = 251 bits (642), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 134/300 (44%), Positives = 186/300 (62%), Gaps = 5/300 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETM 78 H+PVLL ++ +P G LD TFGAGGY+R+ G++ VIA+DRDP A Q Sbjct: 10 HIPVLLGPILKAADPISGG-WLDGTFGAGGYTRALLDAGADSVIAVDRDPLAFEMAQPWA 68 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138 Y + + FS + ++ D +DGVV DLGVSSMQ+D +RGFSF + GPLDMRM Sbjct: 69 DQYGARLIQQRGVFSDMAEFAQD--LDGVVLDLGVSSMQLDRAERGFSFMRDGPLDMRMG 126 Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198 G SA+D+VN + +++ IL GEE+ + RIA AIV+ R P TT L+ LI+K Sbjct: 127 QEGQSAADIVNDYDAEEIAEILYNYGEERASRRIARAIVELRAETPITTTLQLAGLIEKC 186 Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258 + K + HPATRSFQALRI VN+E EL +GL +AE+AL GGLL +V+FHS+EDR+ Sbjct: 187 LPRKKPGQSHPATRSFQALRIAVNDEYGELYRGLMAAERALAPGGLLAIVTFHSVEDRMA 246 Query: 259 KKFFASRSGKVMAVRHMIPS-NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 K+F SR+G P + F+ +++K + ++ ++ N R+RSAKLR RT Sbjct: 247 KRFLQSRAGTTGNANRFAPQLDVEKPAFELLSRKAITASEFELENNVRARSAKLRLARRT 306 >gi|329848184|ref|ZP_08263212.1| S-adenosyl-methyltransferase MraW [Asticcacaulis biprosthecum C19] gi|328843247|gb|EGF92816.1| S-adenosyl-methyltransferase MraW [Asticcacaulis biprosthecum C19] Length = 317 Score = 251 bits (640), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 136/307 (44%), Positives = 193/307 (62%), Gaps = 13/307 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRD----PFAVSCGQ 75 H+ VLL +V+ +L K+I+D TFGAGGYSR+F G+ V+A DRD PF + Q Sbjct: 7 HLSVLLPEVLTVLGNLEDKLIVDGTFGAGGYSRAFLLGGARVVAFDRDARVRPFVEALSQ 66 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + ++F FS++ + + + G D +V D+GVSSMQ+D DRGFSF + GP Sbjct: 67 E----FPDRFQWVNRCFSEMAEGLAELGHASCDAIVLDIGVSSMQLDEADRGFSFMRDGP 122 Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 LDMRMS G SA+D+VN + D+ ++ + GEE ++ IA AIV+RR++ PF+ T DL+ Sbjct: 123 LDMRMSVDGRSAADIVNDDDKDDIAHVIWLYGEEHKSRSIASAIVRRREAQPFERTLDLA 182 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++++ + + +HPATR+FQALRI VN+E+ EL + L AE L+ G+L VV+FHS Sbjct: 183 EVVERALGGRRGAPVHPATRTFQALRIAVNDELGELERALEVAEILLRPDGVLAVVTFHS 242 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 LEDR+VK FF RSGK+ P V+ IT K V ++ ++A N RSRSAK Sbjct: 243 LEDRIVKNFFNDRSGKMAGGSRHAPQKLATRTPVYTLITPKAVQASEAEIAGNPRSRSAK 302 Query: 311 LRAGMRT 317 LRA R Sbjct: 303 LRAVRRN 309 >gi|89055260|ref|YP_510711.1| S-adenosyl-methyltransferase MraW [Jannaschia sp. CCS1] gi|122498265|sp|Q28NM6|RSMH_JANSC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|88864809|gb|ABD55686.1| methyltransferase [Jannaschia sp. CCS1] Length = 327 Score = 250 bits (639), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 140/300 (46%), Positives = 185/300 (61%), Gaps = 4/300 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETM 78 H+PVLL ++ + P G V LD TFGAGGY+R + G++ VI +DRDP A + Sbjct: 10 HIPVLLGAILREVAPVSG-VWLDGTFGAGGYARGLLEGGADTVIGVDRDPLAFEMAADWA 68 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138 Y + L + TFS L D + D+ +DGV DLGVSSMQ+D +RGFSF + GPLDMRM Sbjct: 69 GSYGDALRLKEGTFSNL-DTLADEPLDGVALDLGVSSMQLDLAERGFSFMRDGPLDMRMG 127 Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198 G+SA D+VN A K L IL GEE+ A RIA AIV R +T L+ +++K Sbjct: 128 QIGVSAEDLVNDAPEKLLADILFQYGEERAARRIAKAIVAERLKCRINSTLQLAGIVEKC 187 Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258 + K + HPATRSFQA+RI VN+E +LAQGL +AE+AL+ GG L VV+FHS EDR+V Sbjct: 188 LPSKKPGQSHPATRSFQAIRIAVNDEFGQLAQGLMAAERALRPGGKLAVVTFHSSEDRIV 247 Query: 259 KKFFASRSGKVMAVRHMIPSNAHPAVFQSIT-KKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 KKF + RS P A ++T +K + P +++A N R+RSAKLR RT Sbjct: 248 KKFMSERSSTGGGGSRYAPEAAAKVPGFTLTPRKAIPPDADEIARNTRARSAKLRIATRT 307 >gi|299131933|ref|ZP_07025128.1| S-adenosyl-methyltransferase MraW [Afipia sp. 1NLS2] gi|298592070|gb|EFI52270.1| S-adenosyl-methyltransferase MraW [Afipia sp. 1NLS2] Length = 333 Score = 250 bits (639), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 144/318 (45%), Positives = 198/318 (62%), Gaps = 5/318 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETM 78 H+ VL + + L P G + +DATFGAGGYS+ ++ G+ VI +DRD AV+ + + Sbjct: 8 HISVLGREAVEFLAPHAGGIYVDATFGAGGYSKRILEVAGTRVIGIDRDRTAVAEAFDLV 67 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + + ++ Q FS L + +G VDG+V D+GVSSMQ+D +RGFSF+ G LDM Sbjct: 68 ERAEGRLTVVQDRFSNLAEVCAAEGAPQVDGIVMDIGVSSMQLDRAERGFSFRHDGALDM 127 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RM G SA+DVV A+ KDL I+ I GEE+ + +A AIVK RQ P TT+ L+ ++ Sbjct: 128 RMGQEGASAADVVAVASEKDLANIIYIFGEERHSRAVARAIVKARQDNPIVTTKALADIV 187 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 V ++ N IHPATR+FQALRIF+N E++EL L ++E+ALK GG L+VVSFHSLED Sbjct: 188 SSVVR-ARPNEIHPATRTFQALRIFINEELDELQTALHASERALKPGGRLVVVSFHSLED 246 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 R+VK F ASR+ + RH+ F+ +TK+ VV + A N R+RSAKLRA Sbjct: 247 RIVKNFLASRAKQGGGSRHLPEVEQIAPSFEILTKRPVVANDNETAVNPRARSAKLRAAQ 306 Query: 316 RTVERSIEDDSFVHLPRL 333 RT S +D P L Sbjct: 307 RTANPSHHEDMSFDWPTL 324 >gi|300021770|ref|YP_003754381.1| S-adenosyl-methyltransferase MraW [Hyphomicrobium denitrificans ATCC 51888] gi|299523591|gb|ADJ22060.1| S-adenosyl-methyltransferase MraW [Hyphomicrobium denitrificans ATCC 51888] Length = 345 Score = 250 bits (638), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 126/292 (43%), Positives = 187/292 (64%), Gaps = 8/292 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78 H+PVL +V+ L P G+ +D TFGAGGY+R+ + V+ALDRDP A+ + Sbjct: 21 HIPVLRSEVLETLAPKAGETYIDGTFGAGGYTRAILEAADCRVLALDRDPNAIRGAAPLL 80 Query: 79 RDYKEQFSLFQATFSQL----QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++ + +L ++ FS+L QD + VDGVV D+GVSSMQ+D +RGFSFQ GPLD Sbjct: 81 AEFAPRLTLVESPFSRLEEVAQDALGGAQVDGVVLDIGVSSMQLDDAERGFSFQHDGPLD 140 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRMS +G + +D VN A + + ++ GEE ++ IA AIV+RR P+ T++L+ Sbjct: 141 MRMSSNGQTVADFVNSAAEEIIANVIYAFGEEHKSRAIARAIVRRRAETPYARTRELADT 200 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 + + + K + HPATR+FQALRIF+N+E+ ELA L +AE+ L+ GG L+VVSFHSLE Sbjct: 201 VSRVFHGRKVDGRHPATRTFQALRIFINDELGELASALSAAERVLRPGGRLVVVSFHSLE 260 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSN---AHPAVFQSITKKVVVPTQEDVAFN 303 DR+VKKF A RSGK +V +P+ + P F+ + + + P++ ++ N Sbjct: 261 DRIVKKFIAERSGKTQSVSRHLPTETIKSTPPSFRIVNSRPLTPSKGELDVN 312 >gi|220925316|ref|YP_002500618.1| S-adenosyl-methyltransferase MraW [Methylobacterium nodulans ORS 2060] gi|263456456|sp|B8IMX2|RSMH_METNO RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|219949923|gb|ACL60315.1| S-adenosyl-methyltransferase MraW [Methylobacterium nodulans ORS 2060] Length = 339 Score = 250 bits (638), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 139/307 (45%), Positives = 198/307 (64%), Gaps = 10/307 (3%) Query: 20 HVPVLLEKVIALL--NPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQ 75 H+PVLL++V + L PG +++D TFGAGGY+R+ + G VIA+DRDP A++ G+ Sbjct: 7 HIPVLLKEVRSALRLGEGPG-IVVDGTFGAGGYTRAILEADPGQRVIAIDRDPTAIATGR 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + L Q F +L V +G VDGVV D+GVSSMQ+D RGFSF++ GP Sbjct: 66 GLAAAMAGRLMLVQGRFGELDRLVRAQGIETVDGVVLDIGVSSMQLDQAQRGFSFRQDGP 125 Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 LDMRM G SA+D+VN+A+ +L I+ GEE++A +A AI++ R+ TT L+ Sbjct: 126 LDMRMESGGTSAADLVNEASEAELADIIYHYGEERRARAVARAILEARRRGRIATTATLA 185 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++ V + IHPATR+FQALRI VN+E+ EL + L +AE+ L+ GG L VV+FHS Sbjct: 186 EIVASVVRPEPGSGIHPATRTFQALRIAVNDELGELQRALHAAERILRPGGRLAVVTFHS 245 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRSAK 310 LEDR+VK+FF++RSG+ ++ +P PA F +TK + P++ + N R+RSAK Sbjct: 246 LEDRIVKQFFSARSGRAVSASRHLPMAEKPAPRSFTLVTKGPIGPSEAEATANPRARSAK 305 Query: 311 LRAGMRT 317 LRAG RT Sbjct: 306 LRAGERT 312 >gi|89067948|ref|ZP_01155392.1| S-adenosyl-methyltransferase MraW [Oceanicola granulosus HTCC2516] gi|89046546|gb|EAR52602.1| S-adenosyl-methyltransferase MraW [Oceanicola granulosus HTCC2516] Length = 320 Score = 250 bits (638), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 143/311 (45%), Positives = 195/311 (62%), Gaps = 15/311 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRD 67 MS+A HT PVL+E +I P G LD TFG GGY+R+ + G+ +VI +DRD Sbjct: 1 MSAAAPHT-----PVLIEPIIEACAPVSG-TWLDGTFGFGGYARALLEAGAAHVIGIDRD 54 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 P A + + +L + TFS+L + + +DGVV DLGVSSMQ+D +RGFSF Sbjct: 55 PLAHELAGWVADEPR--VTLIRGTFSELDRH--GEALDGVVLDLGVSSMQLDRPERGFSF 110 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 GPLDMRMS G SA+D+VN+ + + + IL GEE+ + RIA AIV+ R P T Sbjct: 111 MSDGPLDMRMSQDGPSAADLVNELDERTIADILFNYGEERASRRIARAIVRAR---PLAT 167 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T +L++L++ + K + HPATR+FQALRI VNNE ELA+GL +AE+AL GGLL V Sbjct: 168 TAELAALVEGCLPRPKPGQSHPATRTFQALRIAVNNEYGELAEGLMAAERALAPGGLLAV 227 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRS 306 V+FHS+EDR+VK+F +R+G+ P A P F +T+K + + +VA N R+ Sbjct: 228 VTFHSVEDRMVKRFMQARAGQTGGPSRHAPDVAQAPPAFGLVTRKAIGADEAEVARNPRA 287 Query: 307 RSAKLRAGMRT 317 RSAKLR RT Sbjct: 288 RSAKLRIARRT 298 >gi|114799717|ref|YP_761709.1| S-adenosyl-methyltransferase MraW [Hyphomonas neptunium ATCC 15444] gi|123128411|sp|Q0BXT4|RSMH_HYPNA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|114739891|gb|ABI78016.1| S-adenosyl-methyltransferase MraW [Hyphomonas neptunium ATCC 15444] Length = 342 Score = 249 bits (637), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 152/329 (46%), Positives = 209/329 (63%), Gaps = 9/329 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78 H+PV+L +V+ L PA G+VI+D TFG GGY+ + K + V+ +DRD A+ E M Sbjct: 15 HLPVMLAEVLTALAPADGEVIVDGTFGGGGYTTAILKAANCTVLGIDRDLDAI-VRAEKM 73 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + F L G VDGVV D+GVSS QID DRGFSF K GPLDM Sbjct: 74 AQANPRLVPLLGCFGDLDTLAEQAGHASVDGVVLDIGVSSFQIDQADRGFSFMKDGPLDM 133 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RM SG SA+DVVN + K L ++ LGEEK + RIA +V+RR APF+TT DL++++ Sbjct: 134 RMGGSGPSAADVVNTMSEKGLADVIFRLGEEKNSRRIARVLVQRRVQAPFETTADLAAVV 193 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 ++ V + R HPAT +FQA+R++VN+E+ ELA+GLR+AE+ LK GG L+VV+FHSLED Sbjct: 194 EEAVGGRRGARSHPATLTFQAIRMYVNDELGELARGLRAAERILKPGGRLVVVTFHSLED 253 Query: 256 RLVKKFFASRSGKVM-AVRHMIPSNAHPA-VFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 RLVK++ R+G V RHM + PA F+ K V P++++V N R+RSAKLRA Sbjct: 254 RLVKQWLRERAGAVPGGSRHMPLMSKGPAPAFELQENKAVQPSEKEVETNPRARSAKLRA 313 Query: 314 GMRTVERSIEDDSF--VHLPRLPTLSQFR 340 +RT + D++ ++LP L L + R Sbjct: 314 AIRTNADAALDEASDGMNLPPLAELEKSR 342 >gi|126729243|ref|ZP_01745057.1| S-adenosyl-methyltransferase MraW [Sagittula stellata E-37] gi|126710233|gb|EBA09285.1| S-adenosyl-methyltransferase MraW [Sagittula stellata E-37] Length = 330 Score = 249 bits (636), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 139/300 (46%), Positives = 190/300 (63%), Gaps = 9/300 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETM 78 HVPVLL ++ + P G V +D TFGAGGY+R + G+ VI +DRDP A + Sbjct: 13 HVPVLLAPLLREVAPVRG-VWIDGTFGAGGYARGLVEAGAERVIGIDRDPLAHEMAAAWL 71 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138 D+ SL + F + D V D DGVV DLGVSSMQ+D +RGFSF + GPLDMRM Sbjct: 72 DDWP-AISLVRENFCNM-DKVADSA-DGVVLDLGVSSMQLDLAERGFSFMRDGPLDMRMG 128 Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198 +G +A+D+VN + +L +L + GEE+Q+ RIA IV+ R PF TT +L+ LI++T Sbjct: 129 QAGPTAADLVNDLSESELADVLYVYGEERQSRRIARRIVEHR---PFLTTLELAGLIERT 185 Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258 + +K + H ATRSFQALRI VN E E L QGL +AE+ LK GG+L VV+FHS+EDR+V Sbjct: 186 IGRTKPGQAHAATRSFQALRIAVNGEYEALWQGLMAAERVLKPGGMLAVVTFHSVEDRMV 245 Query: 259 KKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 K+F + V R+ + A F+ +T+K V P ++++ N R+RSAKLR RT Sbjct: 246 KRFLQLHGDRKRHVNRYATETPEAEAPFEIVTRKAVGPDKDELTANPRARSAKLRVARRT 305 >gi|103487373|ref|YP_616934.1| methyltransferase [Sphingopyxis alaskensis RB2256] gi|123078262|sp|Q1GRX1|RSMH_SPHAL RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|98977450|gb|ABF53601.1| methyltransferase [Sphingopyxis alaskensis RB2256] Length = 325 Score = 248 bits (633), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 137/305 (44%), Positives = 196/305 (64%), Gaps = 10/305 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H PVLL++VIA L APG+ +DATFGAGGY+R+ G+ VIA DRDP A++ G+ + Sbjct: 10 HDPVLLDEVIAALAIAPGERHVDATFGAGGYTRAMLAAGAEVIACDRDPDAIAGGEALVA 69 Query: 80 DYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + + +L F ++ + ++G VDG+ FD+GVSSMQ+D G+RGFSFQK GPLDMR Sbjct: 70 EADGRLTLIHGRFGEIDRLLAERGIDAVDGITFDIGVSSMQLDQGERGFSFQKDGPLDMR 129 Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 M+ G SA+D +N+A+ ++ +L G+E+Q+ R+A AIV R P T +L+S+++ Sbjct: 130 MAQEGESAADWLNRADEYEIADVLYHYGDERQSRRVARAIVAAR---PLTRTSELASVVR 186 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 K + PAT+SFQA+RI +N E++EL GL +AE+ L+ GG L VVSFHS EDR Sbjct: 187 KALRHPPGAPKDPATKSFQAIRIHINRELDELVAGLAAAERVLRPGGRLAVVSFHSTEDR 246 Query: 257 LVKKFFASRS-GKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 +VK F RS G RH + A A F++ +K V P + + A N R+RSA LR+ Sbjct: 247 IVKHFLRERSGGDAAGSRHRPAPTAAARAATFETPARK-VRPGKAEEARNPRARSATLRS 305 Query: 314 GMRTV 318 +RT Sbjct: 306 AVRTA 310 >gi|217979581|ref|YP_002363728.1| S-adenosyl-methyltransferase MraW [Methylocella silvestris BL2] gi|263456483|sp|B8ETL4|RSMH_METSB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|217504957|gb|ACK52366.1| S-adenosyl-methyltransferase MraW [Methylocella silvestris BL2] Length = 346 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 146/304 (48%), Positives = 191/304 (62%), Gaps = 7/304 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF-CKMGSNVIALDRDPFAVSCGQETM 78 H+PVL ++++ L P + LDATFGAGGYSR G+ V+A+DRDP A++ G + Sbjct: 19 HIPVLRDEILELAAPQADGLYLDATFGAGGYSRGLLATQGARVLAIDRDPGAIAAGAGLI 78 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + + +L +A FS L G+ D +FD+GVSSMQ+D RGFSF+ GPLDM Sbjct: 79 AESNGRLTLVEARFSDLAAVAERLGLGAFDAALFDIGVSSMQLDEAARGFSFRFDGPLDM 138 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RM SG SA+D+VN A+ + L IL GEE+ + RIA AIV R APF++T L+++I Sbjct: 139 RMQQSGPSAADIVNDADEEALADILYYFGEERASRRIAKAIVMDRAKAPFRSTAALAAMI 198 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + V K IHPATRSFQALRI VN+E+ EL GL AE LK GG L VV+FHSLED Sbjct: 199 AR-VCPGKPGDIHPATRSFQALRIAVNDELGELVAGLAGAEARLKPGGRLAVVTFHSLED 257 Query: 256 RLVKKFFASRSGKVMAV--RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 R+VK FFA RSG+ A R P F ++ V P+ ++A N R+RSAKLR Sbjct: 258 RIVKLFFAGRSGRGEAPSRRLPGEPIPPPPTFAVSGRQPVTPSAAEIAANPRARSAKLRH 317 Query: 314 GMRT 317 G+RT Sbjct: 318 GVRT 321 >gi|332187132|ref|ZP_08388872.1| S-adenosyl-methyltransferase MraW [Sphingomonas sp. S17] gi|332012832|gb|EGI54897.1| S-adenosyl-methyltransferase MraW [Sphingomonas sp. S17] Length = 326 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 138/311 (44%), Positives = 199/311 (63%), Gaps = 10/311 (3%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDP 68 MS A++ H+PVLL++V+ L PG+ +D TFGAGGY+R+ G+ VIA DRDP Sbjct: 1 MSPAVNDA--PHIPVLLDEVLDALAILPGETHVDGTFGAGGYTRAMLGRGAKVIAFDRDP 58 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 A++ GQ ++ + +L FS L D + VDGVV D+GVSSMQ+D +RGFSFQ Sbjct: 59 DAIANGQALIQ-AEPGLALVHREFSGL-DQALEAQVDGVVLDIGVSSMQLDQAERGFSFQ 116 Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM+ +G SA+D +N A+ + +L GEE ++ R+A AIV R P T Sbjct: 117 GDGPLDMRMAQAGESAADFLNTADEAAIADVLYHYGEEPRSRRVAQAIVAAR---PLMRT 173 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L++++++ + + +++ PATR+FQA+RI VN E+EELA+GL +AE+ALK GG L +V Sbjct: 174 GELAAVVRRALGYRPHDKKDPATRTFQAIRIHVNRELEELAEGLAAAERALKPGGRLAIV 233 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITKKVVVPTQEDVAFNRRS 306 +FHSLEDR+VK+FF R+G++ +P A F ++ K V E +A N R+ Sbjct: 234 TFHSLEDRMVKRFFRERAGQLPGGSRHLPQQVAAQAPSFTAVGKAVRAGAAE-LARNPRA 292 Query: 307 RSAKLRAGMRT 317 RSA LR RT Sbjct: 293 RSATLRFATRT 303 >gi|262831538|sp|Q1QNV1|RSMH_NITHX RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 332 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 150/323 (46%), Positives = 202/323 (62%), Gaps = 7/323 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQETM 78 HVPVL + +A+L P G V +DATFGAGGYSR+ + + VI +DRD A++ G + Sbjct: 8 HVPVLGREAVAMLAPRAGGVYVDATFGAGGYSRAILAVADTRVIGIDRDRSAIAGGFALV 67 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + + +L + FS L +G VDG+V D+GVSSMQ+D DRGFSF+ GPLDM Sbjct: 68 EESGGRLTLVEDRFSNLAAVCAAEGADVVDGIVMDVGVSSMQLDEADRGFSFRLDGPLDM 127 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RMS G +A+DVV +A+ DL I+ I GEE+++ +A AIV R+ AP TT+ L+ ++ Sbjct: 128 RMSGHGPTAADVVARASETDLANIIYIFGEERRSRAVARAIVAARRDAPVATTRALADIV 187 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 K V +K + IHPATR+FQALRIFVN E++EL L +AE+ L+ GG L VVSFHSLED Sbjct: 188 SKVVR-AKPHEIHPATRTFQALRIFVNEELDELIAALAAAERVLRPGGRLAVVSFHSLED 246 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 R+VK FFA R RH F +T++ V QE+V+ N R+RSAKLRA Sbjct: 247 RIVKNFFALRGKTGGGSRHRPEIERAAPSFAILTRRPVTAGQEEVSANPRARSAKLRAAE 306 Query: 316 RTVERSIEDDSFVHLPRLPTLSQ 338 RT + DD P P+L+ Sbjct: 307 RTAAPATADDG--ESPGWPSLAN 327 >gi|92116827|ref|YP_576556.1| methyltransferase [Nitrobacter hamburgensis X14] gi|91799721|gb|ABE62096.1| methyltransferase [Nitrobacter hamburgensis X14] Length = 399 Score = 248 bits (632), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 150/323 (46%), Positives = 202/323 (62%), Gaps = 7/323 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQETM 78 HVPVL + +A+L P G V +DATFGAGGYSR+ + + VI +DRD A++ G + Sbjct: 75 HVPVLGREAVAMLAPRAGGVYVDATFGAGGYSRAILAVADTRVIGIDRDRSAIAGGFALV 134 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + + +L + FS L +G VDG+V D+GVSSMQ+D DRGFSF+ GPLDM Sbjct: 135 EESGGRLTLVEDRFSNLAAVCAAEGADVVDGIVMDVGVSSMQLDEADRGFSFRLDGPLDM 194 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RMS G +A+DVV +A+ DL I+ I GEE+++ +A AIV R+ AP TT+ L+ ++ Sbjct: 195 RMSGHGPTAADVVARASETDLANIIYIFGEERRSRAVARAIVAARRDAPVATTRALADIV 254 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 K V +K + IHPATR+FQALRIFVN E++EL L +AE+ L+ GG L VVSFHSLED Sbjct: 255 SKVVR-AKPHEIHPATRTFQALRIFVNEELDELIAALAAAERVLRPGGRLAVVSFHSLED 313 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 R+VK FFA R RH F +T++ V QE+V+ N R+RSAKLRA Sbjct: 314 RIVKNFFALRGKTGGGSRHRPEIERAAPSFAILTRRPVTAGQEEVSANPRARSAKLRAAE 373 Query: 316 RTVERSIEDDSFVHLPRLPTLSQ 338 RT + DD P P+L+ Sbjct: 374 RTAAPATADDG--ESPGWPSLAN 394 >gi|87199147|ref|YP_496404.1| methyltransferase [Novosphingobium aromaticivorans DSM 12444] gi|123736248|sp|Q2G9A3|RSMH_NOVAD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|87134828|gb|ABD25570.1| methyltransferase [Novosphingobium aromaticivorans DSM 12444] Length = 329 Score = 247 bits (630), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 142/311 (45%), Positives = 197/311 (63%), Gaps = 18/311 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQ---E 76 H+PVLLE+V+A L+P PG +I+DATFGAGGY+R G+ V A DRDP A++ G+ E Sbjct: 11 HIPVLLEEVVAALDPKPGDLIVDATFGAGGYTRRLLDAGATVHAFDRDPDAIAAGKLWGE 70 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 T + + L FS++ + + + G V GVVFD+GVSSMQ+D RGF+F GPL Sbjct: 71 TC-GKEPRLVLHPRRFSEIAEGLAEAGIAGVQGVVFDIGVSSMQLDQAARGFAFSSDGPL 129 Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 DMRMS G SA+D +N+A+ ++ +L GEE+Q+ RIA AIV R P TT ++ Sbjct: 130 DMRMSQEGPSAADFLNEADEGEIADVLYRYGEERQSRRIARAIVAAR---PLTTTAQFAA 186 Query: 194 LIQKTVYFSKNNR-----IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +++K + + + + PATRSFQA+RI VN E++EL QGL +AEK L GG + VV Sbjct: 187 VVRKALGYRPDIKGPKAPKDPATRSFQAVRIHVNGELDELVQGLAAAEKVLVPGGRIAVV 246 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 SFHSLEDR+VK+F +G V A +P + AVF+ + + PT E+ A N R+ Sbjct: 247 SFHSLEDRIVKQFLREGAGAVPAGSRHLPQLESKVQAVFEKPS-GAIRPTPEEEARNPRA 305 Query: 307 RSAKLRAGMRT 317 RSA LR +RT Sbjct: 306 RSATLRCAVRT 316 >gi|148257427|ref|YP_001242012.1| S-adenosyl-methyltransferase MraW [Bradyrhizobium sp. BTAi1] gi|263445839|sp|A5EPL2|RSMH_BRASB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|146409600|gb|ABQ38106.1| S-adenosyl-dependent methyl transferase [Bradyrhizobium sp. BTAi1] Length = 331 Score = 246 bits (629), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 143/318 (44%), Positives = 191/318 (60%), Gaps = 5/318 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETM 78 HVPVL + +A+L P G +DATFGAGGY+R + G+ VI +DRD A++ G + Sbjct: 8 HVPVLGPEAVAMLAPREGGTYIDATFGAGGYTRLILQSPGTRVIGIDRDSTAIAGGAALV 67 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + + +L + FS + D G VDG+V D+GVSSMQ+D RGFSF+ GPLDM Sbjct: 68 AEAGARLTLVENRFSAIADICASLGLSQVDGIVMDVGVSSMQLDSAARGFSFRFDGPLDM 127 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RM +G +A+DVV QA +DL I+ I GEE+ + +A AIV R+ P TT+ L+ ++ Sbjct: 128 RMGETGPTAADVVAQAAERDLADIIYIFGEERHSRAVARAIVAARKEQPITTTRQLADIV 187 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + V SK IHPATR+FQ LRI VN E++EL Q L +AE+ L GG L VVSFHSLED Sbjct: 188 ARVVR-SKPGDIHPATRTFQGLRILVNEELDELEQALSAAEQVLAPGGRLAVVSFHSLED 246 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 R+VK F A RS RH+ FQ + +K VV Q ++ N R+RSAKLR Sbjct: 247 RIVKTFLAERSKTGGGSRHLPEIAQETPTFQLLNRKPVVADQSEIEANPRARSAKLRGAE 306 Query: 316 RTVERSIEDDSFVHLPRL 333 RT + + PRL Sbjct: 307 RTAAPARLPPASSSWPRL 324 >gi|326388910|ref|ZP_08210492.1| methyltransferase [Novosphingobium nitrogenifigens DSM 19370] gi|326206510|gb|EGD57345.1| methyltransferase [Novosphingobium nitrogenifigens DSM 19370] Length = 322 Score = 246 bits (628), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 138/306 (45%), Positives = 193/306 (63%), Gaps = 13/306 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+PVL+++V+ L PG ++D TFGAGGYSR+ G+ V A DRDP A++ G+ Sbjct: 10 HIPVLIDEVLVALGAGPGMTMVDGTFGAGGYSRALVAAGARVHAFDRDPDAIAAGRLLAE 69 Query: 80 DYKE--QFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 E Q L FS+L + + + GV DGVVFD+GVSSMQ+D +RGF+F GPLD Sbjct: 70 CAGEDPQLVLHHRRFSELAEGLAEAGVEQVDGVVFDIGVSSMQLDQANRGFAFSSDGPLD 129 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRM+ G SA+D +N A+ + +L I GEE+Q+ RIA AIV R P TT+ + + Sbjct: 130 MRMAQEGPSAADFLNTADEAAIADVLYIYGEERQSRRIARAIVAAR---PLTTTRQFAEV 186 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 ++K + + PATRSFQA+RI VN E++EL GL +AE+ L GG L VV+FHSLE Sbjct: 187 VRKALGYRPGAPKDPATRSFQAVRIHVNGELDELTAGLAAAERVLAPGGRLAVVTFHSLE 246 Query: 255 DRLVKKFFASRSGKVMA-VRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 DR+VK+F +G V A RH+ + S A P VF+ + + P +E++A N R+RSA L Sbjct: 247 DRIVKQFLREAAGLVPAGSRHLPVLASTARP-VFEKPSSP-IRPGEEELARNPRARSATL 304 Query: 312 RAGMRT 317 R +R+ Sbjct: 305 RWAVRS 310 >gi|320450513|ref|YP_004202609.1| S-adenosyl-methyltransferase MraW [Thermus scotoductus SA-01] gi|320150682|gb|ADW22060.1| S-adenosyl-methyltransferase MraW [Thermus scotoductus SA-01] Length = 286 Score = 246 bits (627), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 137/311 (44%), Positives = 194/311 (62%), Gaps = 34/311 (10%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVS-- 72 + I +H+PVL E+V+ LL PG+V +DAT G G+++ + G VI LD+DP AV+ Sbjct: 2 NAITEHIPVLYEEVLNLLQVRPGQVYVDATLGGAGHTKGILERGGLVIGLDQDPEAVARA 61 Query: 73 --CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSF 127 G +R +FQ F L++ + + GV G++ DLGVSS ++ RGFS+ Sbjct: 62 RALGLPGLR-------VFQQNFRHLKEVLQEAGVSQVAGILADLGVSSFHLEDPKRGFSY 114 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 Q+ GPLDMRM G +A +VVN ++DL RIL LGEEKQA RIA AIV+RR+ AP +T Sbjct: 115 QREGPLDMRMGEEGPTAYEVVNTLPLEDLRRILRDLGEEKQAHRIAKAIVERRRKAPIRT 174 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T +L+ ++++ V F K HPA ++FQA+R++VN+E+ L + LR AE+ L GG L+V Sbjct: 175 TLELAEVVRQAVGFRKAG--HPARKTFQAIRMYVNDELGALEEFLRQAEEVLAPGGRLLV 232 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 ++FHSLEDR+VK+F S KV+ TKK + P+ E+VA N RSR Sbjct: 233 ITFHSLEDRVVKRFLKESSLKVL------------------TKKPITPSPEEVAKNPRSR 274 Query: 308 SAKLRAGMRTV 318 SAKLRA + V Sbjct: 275 SAKLRAAEKEV 285 >gi|254292761|ref|YP_003058784.1| S-adenosyl-methyltransferase MraW [Hirschia baltica ATCC 49814] gi|254041292|gb|ACT58087.1| S-adenosyl-methyltransferase MraW [Hirschia baltica ATCC 49814] Length = 336 Score = 245 bits (626), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 142/326 (43%), Positives = 195/326 (59%), Gaps = 10/326 (3%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQE 76 G H+PVLLE V+ L P G+V +D T+G GGYSR+ + V+A+DRDP A+ + Sbjct: 5 GTHIPVLLEPVVEALAPTDGRVYIDGTYGGGGYSRAVMAVADCTVLAVDRDPDAMQRAWD 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + F +L G VDGV+ DLGVSS QID +RGFSF + GPL Sbjct: 65 HA-GKDPRLKPAPGRFGELDLAARAAGHEYVDGVMLDLGVSSYQIDQAERGFSFMRDGPL 123 Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 DMRM G SA+D VN + KDL I GEE + RIA IVKRR F T DL++ Sbjct: 124 DMRMEQHGPSAADAVNLLSEKDLASIFHFYGEEPASRRIAKFIVKRRDEEKFTRTLDLAN 183 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 LI+ +V + + HPATR FQALR++VN+E+ EL + L ++E+ + +GG L+VV+FHSL Sbjct: 184 LIESSVGGRRGKKTHPATRVFQALRLYVNDELGELVRALVASEEIITSGGRLVVVTFHSL 243 Query: 254 EDRLVKKFFASRSGKV-MAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 EDR+VK F R G + RH P+ P F+ + +K + PT E+VA N RSRS+K Sbjct: 244 EDRIVKTFLRERGGAMGGGSRHAPEAPAGKSP-TFELVARKAIDPTDEEVAGNPRSRSSK 302 Query: 311 LRAGMRTVERSIEDDSFVHLPRLPTL 336 LR +RT + + S ++ R+P+L Sbjct: 303 LRWAIRTDAPTWGEKSGLN-SRIPSL 327 >gi|297717878|gb|ADI50082.1| S-adenosyl-methyltransferase MraW [Candidatus Odyssella thessalonicensis L13] Length = 314 Score = 244 bits (624), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 134/303 (44%), Positives = 192/303 (63%), Gaps = 7/303 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78 H+PVLL+++ L G + +DATFG GGY+R+ + + VIA+DRDP A+ ++ Sbjct: 2 HIPVLLKEMQEALAIRDGALYIDATFGGGGYTRAILEQANCQVIAVDRDPEAIQRAEQLK 61 Query: 79 RDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 Y ++ +FQ FS L + VP + VDGVVFD GVSS QID +RGFSF+ GPLDM Sbjct: 62 AQYPDRLFVFQGVFSDLPSIVEKVPVEKVDGVVFDFGVSSYQIDTPERGFSFRFEGPLDM 121 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RMS G SA+D+VN + +DL ++ GEE ++ RIA AIV+ R+ P QTT +L++LI Sbjct: 122 RMSGEGESAADIVNTYSEEDLANVIYTYGEEYRSRRIARAIVELRKVKPIQTTLELANLI 181 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + V + + HPAT +FQALRI VNNE+ E+ +GL+ AE L G L+ V+FHSLED Sbjct: 182 KSRV-GGRPDAQHPATLTFQALRIKVNNELIEIERGLKFAEDFLSTDGRLVAVTFHSLED 240 Query: 256 RLVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 R+VK F +S + ++P P F + K + P++ +++ N RSRSA+LRA Sbjct: 241 RVVKSFLRQKSVRKQKQSRLLPGEKVPSPPSFHDLYPKGIAPSETEISANPRSRSARLRA 300 Query: 314 GMR 316 +R Sbjct: 301 AVR 303 >gi|114570636|ref|YP_757316.1| S-adenosyl-methyltransferase MraW [Maricaulis maris MCS10] gi|123127593|sp|Q0AMV9|RSMH_MARMM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|114341098|gb|ABI66378.1| S-adenosyl-methyltransferase MraW [Maricaulis maris MCS10] Length = 334 Score = 244 bits (623), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 135/330 (40%), Positives = 199/330 (60%), Gaps = 16/330 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF-----CKMGSNVIALDRDPFA 70 ++ H+PV++ +V+ L P G + +D TFGAGGYSR CK+ I +DRDP Sbjct: 2 SVAPHIPVMMSEVLHALEPRSGALYIDGTFGAGGYSRGILSAADCKL----IGIDRDPAV 57 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSF 127 + ++ +F+ +A FS + + + +G VDG+V D+GVSSMQID +RGFSF Sbjct: 58 QPTATQLVQASGGRFAFAEAPFSAMGEVLASRGIDQVDGIVLDIGVSSMQIDQAERGFSF 117 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM+ SG +A+D VN+ +L I + GEE+++ RIA I R A +T Sbjct: 118 MRKGPLDMRMAASGPTAADAVNRLKEAELADIFYVYGEERRSRRIAKFICTARAEAKIET 177 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T L+ ++ + K+++IHPAT+ FQALRIFVN+E+ ELA+ L ++E+ L G L+V Sbjct: 178 TDRLAEIVTRATG-GKHSKIHPATKVFQALRIFVNDELGELARALEASERLLAPLGRLVV 236 Query: 248 VSFHSLEDRLVKKFFASRSGKV--MAVRHMIPSNAHPA-VFQSITKKVVVPTQEDVAFNR 304 V+FHSLEDR+VK F SR+G R+ A PA F +T++ V + E+ A N Sbjct: 237 VTFHSLEDRMVKTFLRSRAGLAGGGGSRYEPAVEAGPAPSFSLLTRRAVSASDEEAAENP 296 Query: 305 RSRSAKLRAGMRTVERSIEDDSFVHLPRLP 334 R+RSAKLRA +R + D +H +P Sbjct: 297 RARSAKLRAAIRNEAPAWSDSPSLHTSIVP 326 >gi|241762288|ref|ZP_04760369.1| S-adenosyl-methyltransferase MraW [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241373191|gb|EER62821.1| S-adenosyl-methyltransferase MraW [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 332 Score = 243 bits (620), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 142/320 (44%), Positives = 196/320 (61%), Gaps = 10/320 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSNVIALDRDPFAVSCGQETM 78 H+PVLL++VI L+P G + +D TFGAGGYSR+ K + VIA DRDP A+ G + Sbjct: 10 HIPVLLDEVIEALSPVEGGIYIDGTFGAGGYSRAILEKADTQVIAFDRDPDAIREGASLV 69 Query: 79 RDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 YK + L FS + D + K VDG+VFD+GVSSMQID +RGFS Q GPLDM Sbjct: 70 EKYKGRLRLVNDCFSNIGHHLDALDIKAVDGMVFDIGVSSMQIDRPERGFSIQADGPLDM 129 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RM+ +G+SA + +N A KD+ +L + GEE+Q+ R+A AIV R P TT L+ +I Sbjct: 130 RMAQTGLSAEEFLNNAQEKDIADVLYLYGEERQSRRVARAIVAAR---PLTTTFQLAKVI 186 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 ++++ + ++ PA FQA+RI +N E++EL GL++AE+ LK+ G L VV+FHSLED Sbjct: 187 RQSLGYRPFDKKDPAAHCFQAIRIHLNRELDELKDGLQTAERFLKSKGCLAVVTFHSLED 246 Query: 256 RLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 R+VK F +G+ V RH VF S + V + ++A N R+RSA LRA Sbjct: 247 RIVKHFMREHAGQTGQVSRHQPVIPQQNPVFFSKPARPVRAGEAELARNPRARSATLRAV 306 Query: 315 MRTVERSIEDDSF--VHLPR 332 RT ED S H+PR Sbjct: 307 YRTETPFSEDISRPDTHIPR 326 >gi|260752706|ref|YP_003225599.1| S-adenosyl-methyltransferase MraW [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552069|gb|ACV75015.1| S-adenosyl-methyltransferase MraW [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 332 Score = 243 bits (620), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 142/320 (44%), Positives = 195/320 (60%), Gaps = 10/320 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSNVIALDRDPFAVSCGQETM 78 H+PVLL++VI L+P G + +D TFGAGGYSR+ K + VIA DRDP A+ G + Sbjct: 10 HIPVLLDEVIEALSPVEGGIYIDGTFGAGGYSRAILEKADTQVIAFDRDPDAIREGAALV 69 Query: 79 RDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 YK + L FS + D + K VDG+VFD+GVSSMQID +RGFS Q GPLDM Sbjct: 70 EKYKGRLRLVNDCFSNIDHHLDALDIKAVDGMVFDIGVSSMQIDRPERGFSIQADGPLDM 129 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RM+ +G+SA + +N A KD+ +L + GEE+Q+ R+A AIV R P TT L+ +I Sbjct: 130 RMAQAGLSAEEFLNNAQEKDIADVLYLYGEERQSRRVARAIVAAR---PLTTTFQLAKVI 186 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 ++++ + ++ PA FQA+RI +N E++EL GL++AE+ LK G L VV+FHSLED Sbjct: 187 RQSLGYRPFDKKDPAAHCFQAIRIHLNRELDELKDGLQTAERFLKTKGCLAVVTFHSLED 246 Query: 256 RLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 R+VK F +G+ V RH VF S + V + ++A N R+RSA LRA Sbjct: 247 RIVKHFMREHAGQTGQVSRHQPVIPQQNPVFFSKPARPVRAGEAELARNPRARSATLRAV 306 Query: 315 MRTVERSIEDDSF--VHLPR 332 RT ED S H+PR Sbjct: 307 YRTETPFSEDISRPDTHIPR 326 >gi|126735371|ref|ZP_01751117.1| S-adenosyl-methyltransferase MraW [Roseobacter sp. CCS2] gi|126715926|gb|EBA12791.1| S-adenosyl-methyltransferase MraW [Roseobacter sp. CCS2] Length = 297 Score = 243 bits (619), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 131/280 (46%), Positives = 177/280 (63%), Gaps = 9/280 (3%) Query: 41 LDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYV 99 +D TFG GGY+R+ G++ VI +DRDP A + + DY ++ FS+L +Y Sbjct: 1 MDGTFGNGGYTRALLAAGADKVIGVDRDPLAFEMAADWIGDYGDRIKTVAGVFSKLDEYG 60 Query: 100 PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRI 159 D +DGVV DLGVSSMQ+D +RGFSF + GPLDMRMS G SA+D+ N A+ +L I Sbjct: 61 AD--LDGVVLDLGVSSMQLDLAERGFSFMRDGPLDMRMSQDGPSAADLCNDADEAELADI 118 Query: 160 LGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRI 219 + + GEE+ + RIA AIV R P TT L+ +++ + SK + HPATR+FQALRI Sbjct: 119 IYLYGEERASRRIAKAIVDAR---PLTTTLQLAKIVEGCLPRSKPGQSHPATRTFQALRI 175 Query: 220 FVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP-- 277 VNNE ELA+GL +AE+ALK G L VV+FHS+EDR+VK+F +RSG P Sbjct: 176 AVNNEYGELAEGLMAAERALKPDGQLAVVTFHSVEDRMVKRFLQARSGNTANANRYAPEI 235 Query: 278 SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 PA ++ +K + P + ++A N RSRSAKLR RT Sbjct: 236 EQVTPA-WRIEKRKAIGPDEAELAENPRSRSAKLRVASRT 274 >gi|56551719|ref|YP_162558.1| S-adenosyl-methyltransferase MraW [Zymomonas mobilis subsp. mobilis ZM4] gi|59803046|sp|Q9REQ9|RSMH_ZYMMO RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|56543293|gb|AAV89447.1| S-adenosyl-methyltransferase MraW [Zymomonas mobilis subsp. mobilis ZM4] Length = 332 Score = 242 bits (617), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 142/323 (43%), Positives = 196/323 (60%), Gaps = 10/323 (3%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSNVIALDRDPFAVSCGQ 75 + H+PVLL++VI L+P G + +D TFGAGGYSR+ K + VIA DRDP A+ G Sbjct: 7 LAPHIPVLLDEVIEALSPVEGGIYIDGTFGAGGYSRAILEKADTQVIAFDRDPDAIREGA 66 Query: 76 ETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + YK + L FS + D + K VDG+VFD+GVSSMQID +RGFS Q GP Sbjct: 67 SLVEKYKGRLRLVNDCFSNIGHHLDALDIKTVDGMVFDIGVSSMQIDRPERGFSIQADGP 126 Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 LDMRM+ +G+SA + +N A KD+ +L + GEE+Q+ R+A AIV R P TT L+ Sbjct: 127 LDMRMAQAGLSAEEFLNNAQEKDIADVLYLYGEERQSRRVARAIVAAR---PLTTTFQLA 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I++++ + ++ PA FQA+RI +N E++EL GL++AE+ LK G L VV+FHS Sbjct: 184 KVIRQSLGYRPFDKKDPAAHCFQAIRIHLNRELDELKDGLQTAERFLKTKGCLAVVTFHS 243 Query: 253 LEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK F +G+ V RH VF S + V + ++A N R+RSA L Sbjct: 244 LEDRIVKHFMREHAGQTGQVSRHQPVIPQQNPVFFSKPARPVRAGETELARNPRARSATL 303 Query: 312 RAGMRTVERSIEDDSF--VHLPR 332 RA RT ED S H+PR Sbjct: 304 RAVYRTETPFSEDISRPDTHIPR 326 >gi|310814902|ref|YP_003962866.1| S-adenosyl-methyltransferase MraW [Ketogulonicigenium vulgare Y25] gi|308753637|gb|ADO41566.1| S-adenosyl-methyltransferase MraW [Ketogulonicigenium vulgare Y25] Length = 328 Score = 241 bits (616), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 136/300 (45%), Positives = 184/300 (61%), Gaps = 7/300 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETM 78 HV VL++ ++ + P G V +D TFGAGGY+R G++ VI +DRDP + Sbjct: 7 HVSVLIKPLVRAVAPVQG-VWVDGTFGAGGYTRDLLAAGADKVIGIDRDPSVFPLSADWR 65 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138 ++ L TFS++ + V + VDGVV DLGVSSMQID +RGFSFQK GPLDMRM Sbjct: 66 AAMPDRVDLRLGTFSEMDEIVGEM-VDGVVLDLGVSSMQIDQAERGFSFQKEGPLDMRMG 124 Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198 SG +A+D+ N ++L IL + GEE+ + RIA AIV+ R P T +L+ ++ Sbjct: 125 DSGPTAADLCNTLPEEELANILYLFGEERASRRIARAIVQAR---PITRTLELAEIVSSC 181 Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258 + K + HPATRSFQALRI VN+E +L GL +AE+ LK GG L VV+FHS+EDR+V Sbjct: 182 LPRQKPGQSHPATRSFQALRIAVNDEYRQLYDGLAAAERILKPGGYLAVVTFHSVEDRMV 241 Query: 259 KKFFASRSGKVMAVRHMIPS-NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 K+F R+G V P + P F +T+K + P ++VA N RSRSA LR RT Sbjct: 242 KRFMQLRAGAVGGGSRYAPEVQSAPPAFTLVTRKAIQPDDDEVAANPRSRSALLRVAKRT 301 >gi|218508691|ref|ZP_03506569.1| S-adenosyl-methyltransferase MraW [Rhizobium etli Brasil 5] Length = 227 Score = 241 bits (615), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 123/227 (54%), Positives = 157/227 (69%), Gaps = 1/227 (0%) Query: 116 MQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175 MQ+D +RGFSFQK+GPLDMRMS +G+SA+DVVN+A V DL RI LGEE QA RIAHA Sbjct: 1 MQLDEAERGFSFQKNGPLDMRMSATGVSAADVVNRAKVADLIRIFHFLGEESQAPRIAHA 60 Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 I KRR PF+TT+DL+ LI+ ++IHPATR FQALRIFVN+E+ ELAQ L +A Sbjct: 61 IEKRRAEKPFETTRDLAGLIELVTPRKMKDKIHPATRVFQALRIFVNDELGELAQALFAA 120 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295 E LK GG L+VV+FHSLEDR+VKKFF+ R+GK RH+ ++ A F ++ K +V Sbjct: 121 ETVLKPGGRLVVVTFHSLEDRIVKKFFSDRAGKASGSRHLPAAHERAATFTTVGKSMVSA 180 Query: 296 TQEDVAFNRRSRSAKLRAGMRTVERSIEDD-SFVHLPRLPTLSQFRG 341 ++ + N R+RSAKLRAG RT + D S P L +L + G Sbjct: 181 SEAEAESNPRARSAKLRAGQRTAAAAEAADMSLFGFPNLASLGKLGG 227 >gi|115524112|ref|YP_781023.1| methyltransferase [Rhodopseudomonas palustris BisA53] gi|115518059|gb|ABJ06043.1| S-adenosyl-methyltransferase MraW [Rhodopseudomonas palustris BisA53] Length = 400 Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 151/326 (46%), Positives = 198/326 (60%), Gaps = 8/326 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETM 78 H+ VL + + L P G V +DATFGAGGYSR+ + G+ VI +DRD A++ G + + Sbjct: 77 HISVLGREAVDWLAPRDGGVYVDATFGAGGYSRAILTIDGTRVIGIDRDRTAIAGGFDLV 136 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + +L ++ FSQL + +GV GVV D+GVSSMQ+D +RGFSF+ GPLDM Sbjct: 137 EQSDGRLTLVESRFSQLAEVCASQGVGQVDGVVMDVGVSSMQLDQAERGFSFRFDGPLDM 196 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RM G SA++V+ A+ DL I I GEE+ + +A AIV R P TT+ L+ L+ Sbjct: 197 RMGHDGFSAAEVIAAASEADLANIFYIFGEERHSRAVARAIVAARAETPIVTTKALADLV 256 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 K V+ SK IHPATRSFQ LRIFVN E++EL L +AE+ LK GG L+VVSFHSLED Sbjct: 257 SKVVH-SKPGEIHPATRSFQGLRIFVNAELDELHLALTAAERVLKPGGRLVVVSFHSLED 315 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 R+VK FFA R RH F +TK+ V P+ E+ A N R+RSAKLRAG Sbjct: 316 RIVKNFFAERGKASSGSRHRPEMAQQQPSFAILTKRPVTPSDEETAANPRARSAKLRAGE 375 Query: 316 RTVERSIEDDSFVHLPRLPTLSQFRG 341 RT + + LP PTL+ G Sbjct: 376 RTAAPAQPE---APLPHWPTLASVMG 398 >gi|157826956|ref|YP_001496020.1| S-adenosyl-methyltransferase MraW [Rickettsia bellii OSU 85-389] gi|167011836|sp|A8GVV6|RSMH_RICB8 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|157802260|gb|ABV78983.1| S-adenosyl-methyltransferase MraW [Rickettsia bellii OSU 85-389] Length = 305 Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 129/302 (42%), Positives = 185/302 (61%), Gaps = 7/302 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQETM 78 H+PV+L +++ L P G+ LD TFGAGGYS++ + V ALDRDP + +E Sbjct: 5 HIPVMLNEMLKFLAPKAGESYLDCTFGAGGYSKALLENCDCYVTALDRDPNVIKKAEEIK 64 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138 +YK++F + F + K DG+V DLGVSSMQ+D DRGFSF GPLDMRMS Sbjct: 65 HNYKDRFDFVETNFGNCFAKLESKKFDGIVLDLGVSSMQLDIPDRGFSFLHDGPLDMRMS 124 Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198 G+SA + +N A KDL ++ G+E + RIA IV+ R++A +T L+ ++ Sbjct: 125 GQGLSAEEFINTAEEKDLADVIYKYGDETFSRRIAKKIVEVRKAARIDSTGKLADIVHSC 184 Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258 + F K +I PAT++FQA+RI++NNE+ EL Q L + + LK G L+VVSFHSLEDR+V Sbjct: 185 IGFRK-GKIDPATKTFQAIRIYINNELGELEQFLANVKNILKKDGRLVVVSFHSLEDRIV 243 Query: 259 KKFFASRSGKVMA----VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 K FF S K +A + I N + + IT K +P+ ++++ N R+RSAKLRA Sbjct: 244 KNFFKENSEKPVARSKYAKEDIMLNPDKWL-KIITNKAEIPSDKEISLNVRARSAKLRAA 302 Query: 315 MR 316 + Sbjct: 303 KK 304 >gi|91205355|ref|YP_537710.1| S-adenosyl-methyltransferase MraW [Rickettsia bellii RML369-C] gi|122425755|sp|Q1RJ43|RSMH_RICBR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|91068899|gb|ABE04621.1| S-adenosyl-methyltransferase MraW [Rickettsia bellii RML369-C] Length = 305 Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 129/302 (42%), Positives = 186/302 (61%), Gaps = 7/302 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQETM 78 H+PV+L +++ L P G+ LD TFGAGGYS++ + V ALDRDP + +E Sbjct: 5 HIPVMLNEMLKFLAPKAGESYLDCTFGAGGYSKALLENCDCYVTALDRDPNVIKKAEEIK 64 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138 +YK++F + F + K DG+V DLGVSSMQ+D DRGFSF GPLDMRMS Sbjct: 65 HNYKDRFDFVETNFGNCFAKLESKKFDGIVLDLGVSSMQLDIPDRGFSFLHDGPLDMRMS 124 Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198 G+SA + +N A KDL ++ G+E + RIA IV+ R++A +T L+ +++ Sbjct: 125 GQGLSAEEFINTAEEKDLADVIYKYGDETFSRRIAKKIVEVRKAARIDSTGKLADIVRSC 184 Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258 + F K +I PAT++FQA+RI++NNE+ EL Q L + + LK G L+VVSFHSLEDR+V Sbjct: 185 IGFRK-GKIDPATKTFQAIRIYINNELGELEQFLANVKNILKKDGRLVVVSFHSLEDRIV 243 Query: 259 KKFFASRSGKVMA----VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 K FF S K +A + I N + + IT K +P+ ++++ N R+RSAKLRA Sbjct: 244 KNFFKENSEKPVARSKYAKEDIMLNPDKWL-KIITNKAEIPSDKEISLNVRARSAKLRAA 302 Query: 315 MR 316 + Sbjct: 303 KK 304 >gi|262831542|sp|Q07PU1|RSMH_RHOP5 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 332 Score = 240 bits (613), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 151/326 (46%), Positives = 198/326 (60%), Gaps = 8/326 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETM 78 H+ VL + + L P G V +DATFGAGGYSR+ + G+ VI +DRD A++ G + + Sbjct: 9 HISVLGREAVDWLAPRDGGVYVDATFGAGGYSRAILTIDGTRVIGIDRDRTAIAGGFDLV 68 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + +L ++ FSQL + +GV GVV D+GVSSMQ+D +RGFSF+ GPLDM Sbjct: 69 EQSDGRLTLVESRFSQLAEVCASQGVGQVDGVVMDVGVSSMQLDQAERGFSFRFDGPLDM 128 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RM G SA++V+ A+ DL I I GEE+ + +A AIV R P TT+ L+ L+ Sbjct: 129 RMGHDGFSAAEVIAAASEADLANIFYIFGEERHSRAVARAIVAARAETPIVTTKALADLV 188 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 K V+ SK IHPATRSFQ LRIFVN E++EL L +AE+ LK GG L+VVSFHSLED Sbjct: 189 SKVVH-SKPGEIHPATRSFQGLRIFVNAELDELHLALTAAERVLKPGGRLVVVSFHSLED 247 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 R+VK FFA R RH F +TK+ V P+ E+ A N R+RSAKLRAG Sbjct: 248 RIVKNFFAERGKASSGSRHRPEMAQQQPSFAILTKRPVTPSDEETAANPRARSAKLRAGE 307 Query: 316 RTVERSIEDDSFVHLPRLPTLSQFRG 341 RT + + LP PTL+ G Sbjct: 308 RTAAPAQPE---APLPHWPTLASVMG 330 >gi|209963954|ref|YP_002296869.1| S-adenosyl-methyltransferase MraW [Rhodospirillum centenum SW] gi|262825439|sp|B6IRH0|RSMH_RHOCS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|209957420|gb|ACI98056.1| S-adenosyl-methyltransferase MraW [Rhodospirillum centenum SW] Length = 329 Score = 239 bits (611), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 134/304 (44%), Positives = 190/304 (62%), Gaps = 7/304 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF-CKMGSNVIALDRDPFAVSCGQETM 78 H+PVL ++V+ L P G V++D TFGAGGY+ + V A+DRDP AV+ G Sbjct: 16 HIPVLRDEVVDALAPRDGAVLVDGTFGAGGYTAALLASAACTVWAIDRDPAAVARGHALA 75 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + + ++ TF ++ + G VDG+ D+GVSS QID RGFSF+ GPLDM Sbjct: 76 ARHPGRLTVLDGTFGCMESLLAAHGITRVDGIALDIGVSSPQIDDPSRGFSFRFDGPLDM 135 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RM G +A+D+VN+ + ++ I+ GEE+ + R+A AIV RR+ AP T DL+ ++ Sbjct: 136 RMGSHGTTAADIVNERDEAEIADIVWRYGEERHSRRVARAIVARRREAPITRTLDLAEIV 195 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + V SK+ I PATR+FQALRI VN+E+ EL +GL +AE+ L GG L VV+FHSLED Sbjct: 196 RSVVPKSKDG-IDPATRTFQALRIAVNDELGELERGLAAAERLLAPGGRLAVVTFHSLED 254 Query: 256 RLVKKFFASRSGKVMA-VRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 R+VK+F SRS A RH+ P++A F+ I + V P ++A N R+RSA+LR+ Sbjct: 255 RVVKEFLRSRSAAAPAPSRHLPAPADAPAPTFRLIARSGVTPAPAELAANPRARSARLRS 314 Query: 314 GMRT 317 RT Sbjct: 315 AERT 318 >gi|195997843|ref|XP_002108790.1| hypothetical protein TRIADDRAFT_19892 [Trichoplax adhaerens] gi|190589566|gb|EDV29588.1| hypothetical protein TRIADDRAFT_19892 [Trichoplax adhaerens] Length = 378 Score = 239 bits (610), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 136/344 (39%), Positives = 202/344 (58%), Gaps = 42/344 (12%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAV 71 H ++ H PVLL+ V+ LL PA G+ +DATFG GG++ + K ++ + A+D DP A+ Sbjct: 25 HCSVLKHQPVLLDTVVKLLAPANGQSYIDATFGGGGHTSAILKAATDCQIYAIDTDPLAI 84 Query: 72 SCGQE---TMRDYKEQFSLFQATFSQL------QDYVPDKGVDGVVFDLGVSSMQIDCGD 122 + ++ T ++ ++ + Q F Q+ Q+ +P +DG++FDLG+SSMQID Sbjct: 85 ARAKQLASTTSNWIQRLKVVQCRFGQMENKLLAQEKLPPNSMDGIIFDLGMSSMQIDDPL 144 Query: 123 RGFSFQKSGPLDMRMSCSG---------ISASDVVNQANVKDLTRILGILGEEKQASRIA 173 RGFSFQ SGPLDMRM + I+A+ V+N + +DL +L GEE++A IA Sbjct: 145 RGFSFQSSGPLDMRMDATSDEIGKHQHRITAAHVINNIDKEDLADVLWNYGEERKARAIA 204 Query: 174 HAIVKRRQSAPFQTTQDLSSLIQKT--VYFSKNNRIHPATRSFQALRIFVNNEIEELAQG 231 AI+K R+ P TT L +I + + K+ +IHPATR+FQA+RI +N+E+ +L QG Sbjct: 205 TAIIKARKKQPITTTDHLVDIIDRQFPYKYRKDGQIHPATRTFQAIRILINDELWQLVQG 264 Query: 232 LRSAEKALKAGGLLIVVSFHSLEDRLVKKF--------FASRSGKVMAVRHMIPSNAHPA 283 L + + LK GG LIV+SFHSLEDR+VKKF F SRS + ++ S + Sbjct: 265 LNACKALLKNGGRLIVISFHSLEDRIVKKFFNGEDRPDFTSRSSPTSSKQYARLSEEGKS 324 Query: 284 VFQS------------ITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 +S I KK + P+ E++A N R+RSAKLR + Sbjct: 325 KIESKSIIKRNSPWKLICKKPIYPSPEEIAHNSRARSAKLRCAI 368 >gi|15604423|ref|NP_220941.1| S-adenosyl-methyltransferase MraW [Rickettsia prowazekii str. Madrid E] gi|8134811|sp|Q9ZCY2|RSMH_RICPR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|3861117|emb|CAA15017.1| unknown [Rickettsia prowazekii] Length = 306 Score = 239 bits (609), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 128/308 (41%), Positives = 194/308 (62%), Gaps = 15/308 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-----FCKMGSNVIALDRDPFAVSCG 74 H+PV+L +V+A+L P + LD TFGAGGYS + +C +V +LDRDP + Sbjct: 5 HIPVMLSEVLAVLAPKGYESYLDCTFGAGGYSNAILNSCYC----SVTSLDRDPNVIESV 60 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++ +DY E+F+ + F+ + K DG+V DLGVSSMQ+D DRGFSF GPLD Sbjct: 61 EKIKQDYGERFNFIKTNFADSFRKLKHKKFDGIVMDLGVSSMQLDIADRGFSFLYDGPLD 120 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRMS G SA + VN A+ +++ ++ G E + RIA +IV+ R++A +T+ L+ + Sbjct: 121 MRMSVQGFSAEEFVNTADEEEIADVIYKYGNESLSRRIAKSIVEYRKTARIDSTRKLAEI 180 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 ++ ++ F K +I AT++FQA+RI++NNE+EEL Q L + + LK G L+VVSFHSLE Sbjct: 181 VRYSIGFRK-GKIDSATKTFQAIRIYINNELEELEQFLANVKNILKKDGRLVVVSFHSLE 239 Query: 255 DRLVKKFFASRSGKVMA----VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 DR+VK FF S K +A + I + + + + IT KV+ P+ +++ N R+RSAK Sbjct: 240 DRIVKNFFKENSEKQVARSKYAKDEIKIDPNKWL-KIITPKVLTPSSQEIRLNVRARSAK 298 Query: 311 LRAGMRTV 318 LRA + + Sbjct: 299 LRAAKKII 306 >gi|238650666|ref|YP_002916519.1| S-adenosyl-methyltransferase MraW [Rickettsia peacockii str. Rustic] gi|259495904|sp|C4K1M0|RSMH_RICPU RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|238624764|gb|ACR47470.1| S-adenosyl-methyltransferase MraW [Rickettsia peacockii str. Rustic] Length = 307 Score = 237 bits (605), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 132/308 (42%), Positives = 187/308 (60%), Gaps = 7/308 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQ 75 I HV V+L K++ L+P G+ LD TFGAGGYS++ + V ALDRDP + + Sbjct: 2 IQSHVSVMLNKMLEALSPKAGESYLDCTFGAGGYSKAILESCNCYVTALDRDPNVIKRAE 61 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 E ++Y E+F + F+ + +K DG+V DLGVSSMQ+D DRGFSF GPLDM Sbjct: 62 EIQQNYGERFDFVETNFAGSFAKLKEKKFDGIVLDLGVSSMQLDIADRGFSFLHDGPLDM 121 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RMS G+SA + VN A K+L ++ G+E + RIA IV+ R++A +T L+ ++ Sbjct: 122 RMSGQGLSAEEFVNAAEAKELADVIYKYGDESFSRRIAKRIVEYRKTARIDSTGKLAEIV 181 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + ++ F K +I PAT++FQA+RI+VN+E+ EL Q L + + LK G L+VVSFHSLED Sbjct: 182 RSSIGFRK-GKIDPATKTFQAIRIYVNDELGELEQFLVNVKNILKKDGRLVVVSFHSLED 240 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHP----AVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 R+VK FF S K + VR + + IT K + P+ ++V N R+RSAKL Sbjct: 241 RIVKNFFKENSEKPV-VRSKYAKDDMTIDPNKWLKIITNKALAPSDKEVGLNIRARSAKL 299 Query: 312 RAGMRTVE 319 RA E Sbjct: 300 RAAKAIYE 307 >gi|218296762|ref|ZP_03497468.1| S-adenosyl-methyltransferase MraW [Thermus aquaticus Y51MC23] gi|218242851|gb|EED09385.1| S-adenosyl-methyltransferase MraW [Thermus aquaticus Y51MC23] Length = 286 Score = 237 bits (605), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 128/299 (42%), Positives = 185/299 (61%), Gaps = 26/299 (8%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETM 78 +H+PVL ++ + LL PG+V +DAT G G++R + G VIALD+DP AV + Sbjct: 6 EHIPVLYQEALDLLRVQPGQVYVDATLGGAGHTRGILERGGRVIALDQDPEAVERAKALS 65 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 ++A F L++ + + GV+ G++ DLGVSS ++ RGFS+Q+ GPLDM Sbjct: 66 HP---NLLAYRANFRHLKEVLKEAGVEEVAGILADLGVSSFHLEDPRRGFSYQQEGPLDM 122 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RM G +A +VVN ++DL RIL LGEE+QA RIA AIV+ R+ A +TT +L+ ++ Sbjct: 123 RMGLEGPTAEEVVNTLPLEDLYRILRDLGEERQAYRIAKAIVEARRKARIRTTTELAEIV 182 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 ++ V F HPA ++FQALRI+VN+E+ L + LR AE+ L GG L+V++FHSLED Sbjct: 183 RRAVGFRAAG--HPARKTFQALRIYVNDELNALEEFLRQAEEVLAPGGRLVVIAFHSLED 240 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 R+VK+F KV+ TKK + P+QE++A N R+RSAKLRA Sbjct: 241 RIVKRFLRESRLKVL------------------TKKPLTPSQEEMAKNPRARSAKLRAA 281 >gi|159045015|ref|YP_001533809.1| S-adenosyl-methyltransferase MraW [Dinoroseobacter shibae DFL 12] gi|263446387|sp|A8LSB5|RSMH_DINSH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|157912775|gb|ABV94208.1| S-adenosyl-L-methionine-dependent methyltransferase [Dinoroseobacter shibae DFL 12] Length = 333 Score = 237 bits (604), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 144/322 (44%), Positives = 197/322 (61%), Gaps = 5/322 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETM 78 H+PVLLE ++ P G LD TFGAGGY+R + G++ VI +D+DP A+ + Sbjct: 12 HIPVLLEPILTRCAPITG-TWLDGTFGAGGYARGLLEAGADRVIGVDQDPLALEMAADWA 70 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138 DY ++ L F L + +DGVV DLGVSSMQ+D +RGFSF + GPLDMRM+ Sbjct: 71 GDYGDRLRLVAGNFEALDAHA-GGPLDGVVLDLGVSSMQLDRAERGFSFLRDGPLDMRMA 129 Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198 G SA+D+V + + L IL LGEE+ A RIA AIV R AP T L+ ++ Sbjct: 130 QHGRSAADLVAEEDADMLADILFHLGEERAARRIARAIVAARAVAPITRTSQLAEIVASC 189 Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258 + K + H ATRSFQALRI VN+E+ L +GL +AE AL+ GG L VV+FHS+EDR+V Sbjct: 190 LPRPKPGQSHAATRSFQALRIAVNDELGALVRGLEAAEGALEPGGWLAVVTFHSIEDRIV 249 Query: 259 KKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 K+FF SG A R+ + PA F+ +K + PT+ +VA N R+RSA+LR G RT Sbjct: 250 KRFFTQASGGAGRANRYAPETEDTPARFRLEPRKAIAPTEAEVAANPRARSARLRIGRRT 309 Query: 318 VERSIEDD-SFVHLPRLPTLSQ 338 ++ D + + LP L TL++ Sbjct: 310 AAPAMPADRAALGLPHLYTLTE 331 >gi|329115569|ref|ZP_08244291.1| Ribosomal RNA small subunit methyltransferase H [Acetobacter pomorum DM001] gi|326694997|gb|EGE46716.1| Ribosomal RNA small subunit methyltransferase H [Acetobacter pomorum DM001] Length = 335 Score = 237 bits (604), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 134/315 (42%), Positives = 185/315 (58%), Gaps = 14/315 (4%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSC 73 T H+PV+L +V+ L PA G ILD TFG GGYS + K NV +DRDP A++ Sbjct: 11 ETAQGHIPVMLPEVLEYLYPADGGRILDCTFGGGGYSSAILKSADCNVWGIDRDPDAIAR 70 Query: 74 GQETMRDYK-----EQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGF 125 GQ R + + + Q +F +Q G+ DG+V DLGVSS Q+D DRGF Sbjct: 71 GQALSRHFPAANGTSRLHMLQGSFGNMQALASAAGISTFDGIVLDLGVSSFQLDEADRGF 130 Query: 126 SFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 SF+ GPLDMRM SG SA+D+VN+A +L I GEE+ A R+A A+V R PF Sbjct: 131 SFRMEGPLDMRMEKSGPSAADIVNKAPEAELADIFHFYGEERHARRLARAVVNARSEMPF 190 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 +TT L++L++ + ++ I ATR+FQ LRI VN+E+ E+ +GL A L GG L Sbjct: 191 ETTTQLANLVRSVIPKDRSG-IDSATRAFQGLRIAVNDELGEIERGLEQALDMLAPGGRL 249 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP----SNAHPAVFQSITKKVVVPTQEDVA 301 +VVSFHSLEDR+ K+ +GK + P + A A F ++T K PT + + Sbjct: 250 VVVSFHSLEDRIAKRMVQHATGKDKSFSRYDPRAAGTPAPEADFVALTHKARRPTDTECS 309 Query: 302 FNRRSRSAKLRAGMR 316 +N R+RSA+LRA M+ Sbjct: 310 YNPRARSARLRAVMK 324 >gi|68171490|ref|ZP_00544874.1| methyltransferase [Ehrlichia chaffeensis str. Sapulpa] gi|67999096|gb|EAM85763.1| methyltransferase [Ehrlichia chaffeensis str. Sapulpa] Length = 297 Score = 237 bits (604), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 136/304 (44%), Positives = 192/304 (63%), Gaps = 16/304 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78 H PVLL +++ +LNP GKV +DATFGAGGY+R+ K + V A+D+D ++ + Sbjct: 2 HTPVLLNEMLDILNPQDGKVYVDATFGAGGYTRAILKSANCQVYAIDQDECTNVFYEKLV 61 Query: 79 RDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 D+ + + FS+++ + K VDG+VFD+GVSSMQ++ RGFSF K GPLDM Sbjct: 62 NDFPGKVHFCVSKFSKIKQILHGAQLKKVDGIVFDIGVSSMQLEDASRGFSFSKDGPLDM 121 Query: 136 RMSCS--GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 RMS S + AS VN A +++ ++ G EK + +IA AI + R+ P +TT +L+S Sbjct: 122 RMSTSTSNVDASVFVNTAFEEEIANVIYQYGGEKYSRKIAKAIAESRKKKPIKTTGELAS 181 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 +++ + SKN+ I PATR+FQA+RI+VN E+EEL QG+ + L GG +IVVSFHSL Sbjct: 182 IVRSVISRSKNHSIDPATRTFQAIRIWVNKELEELEQGIIDSADLLNPGGKIIVVSFHSL 241 Query: 254 EDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 EDR+VK F S SG S P FQ I KKV+ P+ E++ N RSRSAKLR Sbjct: 242 EDRIVKVMFKSLCSGS---------SVISPIGFQLINKKVIRPSFEEILNNPRSRSAKLR 292 Query: 313 AGMR 316 A ++ Sbjct: 293 AILK 296 >gi|73667110|ref|YP_303126.1| S-adenosyl-methyltransferase MraW [Ehrlichia canis str. Jake] gi|88909200|sp|Q3YRX7|RSMH_EHRCJ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|72394251|gb|AAZ68528.1| methyl transferase [Ehrlichia canis str. Jake] Length = 297 Score = 237 bits (604), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 132/302 (43%), Positives = 193/302 (63%), Gaps = 12/302 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78 H PVLL++++ +L+P GK+ +DATFGAGGY+++ + V A+D+D +E Sbjct: 2 HTPVLLKEMLEILDPQDGKIYVDATFGAGGYTKAILNAANCKVCAIDQDKHTSIFYEELA 61 Query: 79 RDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 ++ + F FSQ++ + + VDGVVFD+GVSSMQ+D +RGFSF K+GPLDM Sbjct: 62 NNFPNRIHFFINKFSQIKQVLLGAQLERVDGVVFDIGVSSMQLDDANRGFSFSKNGPLDM 121 Query: 136 RMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RMS S I AS VN + +++ I+ G EK + +IA AI+ R+ +TT +L+S+ Sbjct: 122 RMSTSNSIDASVFVNTVSEEEIANIIYQYGGEKYSRKIAKAIINFRKKKVIETTGELASI 181 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 ++ V SKN+ I+PATR+FQA+RI+VN E++EL QG+ A L GG +IVVSFHSLE Sbjct: 182 VRSVVSRSKNHDINPATRTFQAIRIWVNKELQELEQGIMCAADLLNPGGKIIVVSFHSLE 241 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 DR+VK F S ++++ FQ I KK+V P+ E++ N RSRSAKLRA Sbjct: 242 DRIVKMIFKSLCSDEISLK-------LNTGFQLINKKIVRPSFEEILNNPRSRSAKLRAI 294 Query: 315 MR 316 ++ Sbjct: 295 LK 296 >gi|88657585|ref|YP_507355.1| S-adenosyl-methyltransferase MraW [Ehrlichia chaffeensis str. Arkansas] gi|123493393|sp|Q2GGS8|RSMH_EHRCR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|88599042|gb|ABD44511.1| S-adenosyl-methyltransferase MraW [Ehrlichia chaffeensis str. Arkansas] Length = 297 Score = 237 bits (604), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 136/304 (44%), Positives = 192/304 (63%), Gaps = 16/304 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78 H PVLL +++ +LNP GKV +DATFGAGGY+R+ K + V A+D+D ++ + Sbjct: 2 HTPVLLNEMLDILNPQDGKVYVDATFGAGGYTRAILKSANCQVYAIDQDECTNVFYEKLV 61 Query: 79 RDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 D+ + + FS+++ + K VDG+VFD+GVSSMQ++ RGFSF K GPLDM Sbjct: 62 NDFPGKVHFCVSKFSKIKQILHGAQLKKVDGIVFDIGVSSMQLEDASRGFSFSKDGPLDM 121 Query: 136 RMSCS--GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 RMS S + AS VN A +++ ++ G EK + +IA AI + R+ P +TT +L+S Sbjct: 122 RMSTSISNVDASVFVNTAFEEEIANVIYQYGGEKYSRKIAKAIAESRKKKPIKTTGELAS 181 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 +++ + SKN+ I PATR+FQA+RI+VN E+EEL QG+ + L GG +IVVSFHSL Sbjct: 182 IVRSVISRSKNHSIDPATRTFQAIRIWVNKELEELEQGIIDSADLLNPGGKIIVVSFHSL 241 Query: 254 EDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 EDR+VK F S SG S P FQ I KKV+ P+ E++ N RSRSAKLR Sbjct: 242 EDRIVKVMFKSLCSGS---------SVISPIGFQLINKKVIRPSFEEILNNPRSRSAKLR 292 Query: 313 AGMR 316 A ++ Sbjct: 293 AILK 296 >gi|126726611|ref|ZP_01742451.1| S-adenosyl-methyltransferase MraW [Rhodobacterales bacterium HTCC2150] gi|126703940|gb|EBA03033.1| S-adenosyl-methyltransferase MraW [Rhodobacterales bacterium HTCC2150] Length = 317 Score = 236 bits (603), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 138/305 (45%), Positives = 182/305 (59%), Gaps = 10/305 (3%) Query: 17 IGD--HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSC 73 +GD HVPVLL +IA P G LD TFGAGGY+R+ G++ VIA+D+DP Sbjct: 1 MGDAPHVPVLLRPIIAKTAPISG-TWLDGTFGAGGYTRALLDAGADTVIAVDQDPLVFDM 59 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + +Y + + F+ L + +DG+V DLGVSSMQID +RGFSF + GPL Sbjct: 60 AKSWADEYGARLVPVASNFADLDKA--GQNLDGIVLDLGVSSMQIDQAERGFSFMQDGPL 117 Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 DMRMS SG +A+D+VN A +L IL GEE+ + RIA AI+ R P TT +L + Sbjct: 118 DMRMSQSGPTAADLVNTATEAELADILFQYGEERASRRIAKAIIAAR---PLNTTAELVA 174 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 I + V K + HPATRSFQALRI VN+E+ L +GL +AE+AL G L VV+FHSL Sbjct: 175 AITE-VAPVKKGQSHPATRSFQALRIAVNDELGALIRGLEAAERALAPNGWLAVVTFHSL 233 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 EDR+VK+F SRS R+ + F+ +K + E+VA N R+RSA LR Sbjct: 234 EDRIVKRFLQSRSAISQGSRYAPEQKSAAPTFELQGRKAIKADDEEVAANPRARSASLRL 293 Query: 314 GMRTV 318 RT Sbjct: 294 AKRTT 298 >gi|229586901|ref|YP_002845402.1| S-adenosyl-methyltransferase MraW [Rickettsia africae ESF-5] gi|259495903|sp|C3PNZ9|RSMH_RICAE RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|228021951|gb|ACP53659.1| S-adenosyl-methyltransferase MraW [Rickettsia africae ESF-5] Length = 307 Score = 236 bits (603), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 131/308 (42%), Positives = 187/308 (60%), Gaps = 7/308 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQ 75 I HV V+L +++ L+P G+ LD TFGAGGYS++ + V ALDRDP + + Sbjct: 2 IQSHVSVMLNEMLEALSPKAGESYLDCTFGAGGYSKAILESCNCYVTALDRDPNVIKRAE 61 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 E + Y E+F + F+ + +K DG+V DLGVSSMQ+D DRGFSF +GPLDM Sbjct: 62 EIQQSYGERFDFVETNFADSFAKLKEKKFDGIVLDLGVSSMQLDIADRGFSFLHNGPLDM 121 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RMS G+SA + VN A K+L ++ G+E + RIA IV+ R++A +T L+ ++ Sbjct: 122 RMSGQGLSAEEFVNAAEEKELADVIYKYGDESFSRRIAKRIVEYRKTARIDSTSKLAEIV 181 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + ++ F K +I PAT++FQA+RI+VN+E+ EL Q L + + LK G L+VVSFHSLED Sbjct: 182 RSSIGFRK-GKIDPATKTFQAIRIYVNDELGELEQFLVNVKNILKKDGRLVVVSFHSLED 240 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHP----AVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 R+VK FF S K + VR + + IT K + P+ ++V N R+RSAKL Sbjct: 241 RIVKNFFKENSEKPV-VRSKYAKDDMTIDPNKWLKIITNKALAPSDKEVGLNIRARSAKL 299 Query: 312 RAGMRTVE 319 RA E Sbjct: 300 RAAKAIYE 307 >gi|34581504|ref|ZP_00142984.1| hypothetical protein [Rickettsia sibirica 246] gi|28262889|gb|EAA26393.1| unknown [Rickettsia sibirica 246] Length = 307 Score = 236 bits (602), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 129/307 (42%), Positives = 185/307 (60%), Gaps = 5/307 (1%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQ 75 I HV V+L +++ L+P G+ LD TFGAGGYS++ + V ALDRDP + + Sbjct: 2 IQSHVSVMLNEMLEALSPKAGESYLDCTFGAGGYSKAILESCNCYVTALDRDPNVIKRAE 61 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 E ++Y E+F + F+ + +K DG+V DLGVSSMQ+D DRGFSF GPLDM Sbjct: 62 EIQQNYGERFDFVETNFADSFAKLKEKKFDGIVLDLGVSSMQLDIADRGFSFLHDGPLDM 121 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RMS G+SA + VN A K+L ++ G+E + RIA IV+ R++A +T L+ ++ Sbjct: 122 RMSGQGLSAEEFVNAAEEKELADVIYKYGDESFSRRIAKRIVEYRKTARIDSTTKLAEIV 181 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + ++ F K +I PAT++FQA+RI+VN+E+ EL Q L + + LK G L+VVSFHSLED Sbjct: 182 RSSIGFRK-GKIDPATKTFQAIRIYVNDELGELEQFLVNVKNILKKDGRLVVVSFHSLED 240 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAH---PAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 R+VK FF S K + + + IT K + P+ ++V N R+RSAKLR Sbjct: 241 RIVKNFFKENSEKPVVRSKYAKEDMTIDPNKWLKIITNKALAPSDKEVGLNIRARSAKLR 300 Query: 313 AGMRTVE 319 A E Sbjct: 301 AAKAIYE 307 >gi|165933443|ref|YP_001650232.1| 16S rRNA m(4)C1402 methyltranserfase [Rickettsia rickettsii str. Iowa] gi|189082216|sp|B0BYA0|RSMH_RICRO RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262831529|sp|A8GSS6|RSMH_RICRS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|165908530|gb|ABY72826.1| S-adenosyl-methyltransferase [Rickettsia rickettsii str. Iowa] Length = 307 Score = 236 bits (601), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 131/308 (42%), Positives = 187/308 (60%), Gaps = 7/308 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQ 75 I HV V+L +++ L+P G+ LD TFGAGGYS++ + V ALDRDP + + Sbjct: 2 IQSHVSVMLNEMLEALSPKAGESYLDCTFGAGGYSKAILESCNCYVTALDRDPNVIKRAE 61 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 E ++Y E+F + F+ + +K DG+V DLGVSSMQ+D DRGFSF GPLDM Sbjct: 62 EIQQNYGERFDFVETNFADSFAKLKEKKFDGIVLDLGVSSMQLDIADRGFSFLHDGPLDM 121 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RMS G+SA + VN A K+L ++ G+E + RIA IV+ R++A +T L+ ++ Sbjct: 122 RMSGQGLSAEEFVNAAEEKELADVIYKYGDESFSRRIAKRIVEYRKTARIDSTGKLAEIV 181 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + ++ F K +I PAT++FQA+RI+VN+E+ EL Q L + + LK G L+VVSFHSLED Sbjct: 182 RSSIGFRK-GKIDPATKTFQAIRIYVNDELGELEQFLVNVKNILKKDGRLVVVSFHSLED 240 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHP----AVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 R+VK FF S K + VR + + IT K + P+ ++V N R+RSAKL Sbjct: 241 RIVKNFFKENSEKPV-VRSKYAKDDMTIDPNKWLKIITNKALAPSDKEVGLNIRARSAKL 299 Query: 312 RAGMRTVE 319 RA E Sbjct: 300 RAAKAIYE 307 >gi|157964706|ref|YP_001499530.1| S-adenosyl-methyltransferase MraW [Rickettsia massiliae MTU5] gi|167011838|sp|A8F247|RSMH_RICM5 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|157844482|gb|ABV84983.1| S-adenosyl-methyltransferase MraW [Rickettsia massiliae MTU5] Length = 307 Score = 236 bits (601), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 131/308 (42%), Positives = 187/308 (60%), Gaps = 7/308 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQ 75 I HVPV+L +++ L+P G+ LD TFGAGGYS++ + V ALDRDP + + Sbjct: 2 IQSHVPVMLNEMLEALSPKDGESYLDCTFGAGGYSKAILESCNCYVTALDRDPNVIKRAE 61 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 E ++Y E+F + F+ + +K DG+V DLGVSSMQ+D DRGFSF GPLDM Sbjct: 62 EIQQNYGERFDFVETNFADSFAKLKEKKFDGIVLDLGVSSMQLDIADRGFSFLHDGPLDM 121 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RMS G+SA + VN A K+L ++ G+E + RIA IV+ R++A +T L+ ++ Sbjct: 122 RMSGQGLSAEEFVNTAEEKELADVIYKYGDESFSRRIAKRIVEYRKTARIDSTGKLAEIV 181 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + ++ F K +I PAT++FQA+RI+VN+E+ EL Q L + + LK G L+VVSFHSLED Sbjct: 182 RSSIGFRK-GKIDPATKTFQAIRIYVNDELGELEQFLVNVKNILKKDGRLVVVSFHSLED 240 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHP----AVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 R+VK FF S K + VR + + IT K + + ++V N R+RSAKL Sbjct: 241 RIVKNFFKENSEKPV-VRSKYAKDDMTIDPNKWLKIITNKALASSDKEVGLNIRARSAKL 299 Query: 312 RAGMRTVE 319 RA E Sbjct: 300 RAAKAIYE 307 >gi|15892780|ref|NP_360494.1| S-adenosyl-methyltransferase MraW [Rickettsia conorii str. Malish 7] gi|20139037|sp|Q92HB4|RSMH_RICCN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|15619960|gb|AAL03395.1| unknown [Rickettsia conorii str. Malish 7] Length = 307 Score = 236 bits (601), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 131/308 (42%), Positives = 186/308 (60%), Gaps = 7/308 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQ 75 I HV V+L +++ L+P G+ LD TFGAGGYS++ + V ALDRDP + + Sbjct: 2 IQSHVSVMLNEMLEALSPKAGESYLDCTFGAGGYSKAILESCNCYVTALDRDPNVIKRAE 61 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 E + Y E+F + F+ + +K DG+V DLGVSSMQ+D DRGFSF GPLDM Sbjct: 62 EIQQHYGERFDFVETNFADSFAKLKEKKFDGIVLDLGVSSMQLDIADRGFSFLHDGPLDM 121 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RMS G+SA + VN A K+L ++ G+E + RIA IV+ R++A +T L+ ++ Sbjct: 122 RMSGQGLSAEEFVNAAEEKELADVIYKYGDESFSRRIAKRIVEYRKTARIDSTSKLAEIV 181 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + ++ F K +I PAT++FQA+RI+VN+E+ EL Q L + + LK G L+VVSFHSLED Sbjct: 182 RSSIGFRK-GKIDPATKTFQAIRIYVNDELGELEQFLVNVKNILKKDGRLVVVSFHSLED 240 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHP----AVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 R+VK FF S K + VR + + IT K + P+ ++V N R+RSAKL Sbjct: 241 RIVKNFFKENSEKPV-VRSKYAKDDMTIDPNKWLKIITNKALAPSDKEVGLNIRARSAKL 299 Query: 312 RAGMRTVE 319 RA E Sbjct: 300 RAAKAIYE 307 >gi|258542962|ref|YP_003188395.1| S-adenosyl-methyltransferase MraW [Acetobacter pasteurianus IFO 3283-01] gi|256634040|dbj|BAI00016.1| methytransferase MraW [Acetobacter pasteurianus IFO 3283-01] gi|256637100|dbj|BAI03069.1| methytransferase MraW [Acetobacter pasteurianus IFO 3283-03] gi|256640152|dbj|BAI06114.1| methytransferase MraW [Acetobacter pasteurianus IFO 3283-07] gi|256643209|dbj|BAI09164.1| methytransferase MraW [Acetobacter pasteurianus IFO 3283-22] gi|256646264|dbj|BAI12212.1| methytransferase MraW [Acetobacter pasteurianus IFO 3283-26] gi|256649317|dbj|BAI15258.1| methytransferase MraW [Acetobacter pasteurianus IFO 3283-32] gi|256652303|dbj|BAI18237.1| methytransferase MraW [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655361|dbj|BAI21288.1| methytransferase MraW [Acetobacter pasteurianus IFO 3283-12] Length = 335 Score = 235 bits (600), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 140/324 (43%), Positives = 189/324 (58%), Gaps = 15/324 (4%) Query: 7 KTMSSAIH-HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIAL 64 +SS H T H+PV+L +V+ L+PA G+ ILD TFG GGYS + K NV + Sbjct: 2 NALSSFSHPETAQGHIPVMLAEVLEYLHPADGERILDCTFGGGGYSSAILKSADCNVWGI 61 Query: 65 DRDPFAVSCGQETMR-----DYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSM 116 DRDP A++ GQ R D + L Q +F + G+ DG+V DLGVSS Sbjct: 62 DRDPDAIARGQVLSRTFPTADGGSRLHLLQGSFGNMLALASAAGISTFDGIVLDLGVSSF 121 Query: 117 QIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 Q+D DRGFSF+ GPLDMRM SG SA+D+VN+A +L I GEE+ A R+A A+ Sbjct: 122 QLDEADRGFSFRMEGPLDMRMEKSGPSAADIVNKAPEAELADIFHFYGEERHARRLARAV 181 Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236 V R APFQTT L+ L++ + ++ I ATR+FQ LRI VN+E+ E+ +GL A Sbjct: 182 VNARSEAPFQTTTQLADLVRSVIPKDRSG-IDSATRAFQGLRIAVNDELGEIERGLEQAL 240 Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA-HPAV---FQSITKKV 292 L GG L+VVSFHSLEDR+ K+ +GK + P A PA F ++T K Sbjct: 241 DMLAPGGRLVVVSFHSLEDRIAKRMVQHATGKDKSFSRYDPRAAGTPAPETDFVALTHKA 300 Query: 293 VVPTQEDVAFNRRSRSAKLRAGMR 316 P+ + + N R+RSA+LRA M+ Sbjct: 301 RRPSDTECSHNPRARSARLRAVMK 324 >gi|292572190|gb|ADE30105.1| S-adenosyl-methyltransferase MraW [Rickettsia prowazekii Rp22] Length = 306 Score = 235 bits (600), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 127/308 (41%), Positives = 193/308 (62%), Gaps = 15/308 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-----FCKMGSNVIALDRDPFAVSCG 74 H+PV+L +V+A+L P + LD TFGAGGYS + +C +V +LDRDP + Sbjct: 5 HIPVMLSEVLAVLAPKGYESYLDCTFGAGGYSNAILNSCYC----SVTSLDRDPNVIESV 60 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++ +DY E+F+ + F+ + K DG+V DLGVSSMQ+D DRGFSF GPLD Sbjct: 61 EKIKQDYGERFNFIKTNFADSFRKLKHKKFDGIVMDLGVSSMQLDIADRGFSFLYDGPLD 120 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRMS G SA + VN A+ +++ ++ G E + RIA +IV+ R++A +T+ L+ + Sbjct: 121 MRMSVQGFSAEEFVNTADEEEIADVIYKYGNESLSRRIAKSIVEYRKTARIDSTRKLAEI 180 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 ++ ++ F K +I AT++FQA+RI++NNE+ EL Q L + + LK G L+VVSFHSLE Sbjct: 181 VRYSIGFRK-GKIDSATKTFQAIRIYINNELGELEQFLANVKNILKKDGRLVVVSFHSLE 239 Query: 255 DRLVKKFFASRSGKVMA----VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 DR+VK FF S K +A + I + + + + IT KV+ P+ +++ N R+RSAK Sbjct: 240 DRIVKNFFKENSEKQVARSKYAKDEIKIDPNKWL-KIITPKVLTPSSQEIRLNVRARSAK 298 Query: 311 LRAGMRTV 318 LRA + + Sbjct: 299 LRAAKKII 306 >gi|239947593|ref|ZP_04699346.1| S-adenosyl-methyltransferase MraW [Rickettsia endosymbiont of Ixodes scapularis] gi|241068474|ref|XP_002408444.1| S-adenosyl-methyltransferase mraw, putative [Ixodes scapularis] gi|215492432|gb|EEC02073.1| S-adenosyl-methyltransferase mraw, putative [Ixodes scapularis] gi|239921869|gb|EER21893.1| S-adenosyl-methyltransferase MraW [Rickettsia endosymbiont of Ixodes scapularis] Length = 307 Score = 235 bits (599), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 126/307 (41%), Positives = 185/307 (60%), Gaps = 5/307 (1%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQ 75 I HV V+L +++ L+P G+ LD TFGAGGYS++ + + ALDRDP + + Sbjct: 2 IQSHVSVMLNEMLEALSPKDGESYLDCTFGAGGYSKAILESYDCYITALDRDPNVIKRAE 61 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 E ++Y E+F + F+ + K DG+V DLGVSSMQ+D DRGFSF GPLDM Sbjct: 62 EIKQNYGERFDFIETNFADSFTKLKKKKFDGIVLDLGVSSMQLDIADRGFSFLHDGPLDM 121 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RMS G++A + VN A K+L ++ G+E + RIA IV+ R++A +T L+ ++ Sbjct: 122 RMSGQGLNAEEFVNTAEEKELADVIYKYGDESFSRRIARRIVEYRKTARIDSTDKLAEIV 181 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + ++ F K +I PAT++FQA+RI++N+E+ EL + L + + LK G L+VVSFHSLED Sbjct: 182 RNSIGFRK-GKIDPATKTFQAIRIYINDELGELERFLANVKNILKKDGRLVVVSFHSLED 240 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAH---PAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 R+VK FF S K +A + + IT K + P+ ++V N R+RSAKLR Sbjct: 241 RIVKNFFKENSEKPVARSKYAKDDMAIDPDKWLKIITNKALAPSDKEVGLNIRARSAKLR 300 Query: 313 AGMRTVE 319 A E Sbjct: 301 AAKAIYE 307 >gi|148695830|gb|EDL27777.1| methyltransferase 5 domain containing 1, isoform CRA_a [Mus musculus] gi|148695831|gb|EDL27778.1| methyltransferase 5 domain containing 1, isoform CRA_a [Mus musculus] Length = 339 Score = 234 bits (598), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 138/334 (41%), Positives = 192/334 (57%), Gaps = 37/334 (11%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCGQET 77 H+PV++++V+ L P G+V LD TFG+GG++R+ + +V+ ALDRDP A + ++ Sbjct: 5 HIPVMVDQVVHCLAPQKGQVFLDMTFGSGGHTRAILQKEPDVMVYALDRDPVAYAIAEQL 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 R Y Q FSQ + + GV DG++ DLG SSMQ+D +RGFS +K GP Sbjct: 65 SRLYPTQIQALLGQFSQAEALLMKAGVQPGTIDGILMDLGCSSMQLDAPERGFSLRKDGP 124 Query: 133 LDMRMSCSGI----SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM +ASDVVN + + L IL GEEK A +IA AI++ R + P T Sbjct: 125 LDMRMDGDRYPDTPTASDVVNALDQQALASILRAYGEEKHAKKIASAIIQARSTYPISRT 184 Query: 189 QDLSSLIQ-----KTVYFSKN---NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 Q L+S++ VY K+ H AT++FQALRIFVNNE+ EL GLR+AEK LK Sbjct: 185 QQLASIVAGAFPPSAVYARKDLLQRSTHIATKTFQALRIFVNNELNELYAGLRTAEKFLK 244 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKV---MAVRHMIPSNAH---------------P 282 GG L+ +SFHSLEDR+VK+F S +++R + + P Sbjct: 245 TGGRLVALSFHSLEDRIVKRFLLGISMTERFNLSIRQKVKQTSQLDSDQETEERHSVRAP 304 Query: 283 AVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 ++ I KKV+ P +DV N R RSAKLRA ++ Sbjct: 305 LKWELIHKKVLTPEDQDVQDNPRGRSAKLRAAIK 338 >gi|67459296|ref|YP_246920.1| S-adenosyl-methyltransferase MraW [Rickettsia felis URRWXCal2] gi|75536274|sp|Q4UL18|RSMH_RICFE RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|67004829|gb|AAY61755.1| S-adenosyl-methyltransferase MraW [Rickettsia felis URRWXCal2] Length = 306 Score = 234 bits (598), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 126/303 (41%), Positives = 185/303 (61%), Gaps = 5/303 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQETM 78 H+PV+L +++A L P G+ LD TFGAGGYS++ + + ALDRDP + +E Sbjct: 5 HIPVMLNEMLANLAPKDGEFYLDCTFGAGGYSKAILESCDCYITALDRDPNVIKKAEEIK 64 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138 ++Y E+F + F+ + +K DGVV DLGVSSMQ+D DRGFSF GPLDMRMS Sbjct: 65 QNYGERFDFIETNFADSFAKLKEKKFDGVVLDLGVSSMQLDIADRGFSFLHDGPLDMRMS 124 Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198 G+SA + VN A K+L ++ G+E + RIA IV+ R++ +T L+ +++ + Sbjct: 125 GQGLSAEEFVNIAEEKELADVIYKYGDESFSRRIAKRIVEYRKTTRIDSTGKLAQIVRSS 184 Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258 + F K +I PAT++FQA+RI++NNE+ EL + L + + LK G L+VVSFHSLEDR+V Sbjct: 185 IGFRK-GKIDPATKTFQAIRIYINNELGELERFLANVKNILKKDGRLVVVSFHSLEDRIV 243 Query: 259 KKFFASRSGKVMAVRHMIPSNAH---PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 K FF S K +A + + IT K + + ++V N R+RSAKLRA Sbjct: 244 KNFFKENSEKPVARSKYAKDDIAIDPDKWLKIITNKALATSDKEVGLNIRARSAKLRAAK 303 Query: 316 RTV 318 + + Sbjct: 304 KIL 306 >gi|6685115|gb|AAF23786.1|AF213822_1 hypothetical protein [Zymomonas mobilis subsp. mobilis ZM4] Length = 333 Score = 234 bits (598), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 140/323 (43%), Positives = 197/323 (60%), Gaps = 9/323 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSNVIALDRDPFAVSCGQ 75 + H+PVLL++VI L+P G + +D TFGAGGYSR+ K + VIA DRDP A+ G Sbjct: 7 LAPHIPVLLDEVIEALSPVEGGIYIDGTFGAGGYSRAILEKADTQVIAFDRDPDAIREGA 66 Query: 76 ETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + YK + L FS + D + K VDG+VFD+GVSSMQID +RGFS Q GP Sbjct: 67 SLVEKYKGRLRLVNDCFSNIGHHLDALDIKTVDGMVFDIGVSSMQIDRPERGFSIQADGP 126 Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 LDMRM+ +G+SA +++N A KD+ +L + GEE+Q+ R+A AIV R +A + L+ Sbjct: 127 LDMRMAQAGLSAEELLNNAQEKDIADVLYLYGEERQSRRVATAIV--RGTAFKRRLFRLA 184 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I++++ + ++ PA FQA+RI +N E++EL GL++AE+ LK G L VV+FHS Sbjct: 185 KVIRQSLGYRPFDKKDPAAHCFQAIRIHLNRELDELKDGLQTAERFLKTKGCLAVVTFHS 244 Query: 253 LEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK F +G+ V RH VF S + V + ++A N R+RSA L Sbjct: 245 LEDRIVKHFMREHAGQTGQVSRHQPVIPQQNPVFFSKPARPVRAGETELARNPRARSATL 304 Query: 312 RAGMRTVERSIEDDSF--VHLPR 332 RA RT ED S H+PR Sbjct: 305 RAVYRTETPFSEDISRPDTHIPR 327 >gi|27229243|ref|NP_084066.2| probable methyltransferase-like protein 15 [Mus musculus] gi|81906157|sp|Q9DCL4|MET15_MOUSE RecName: Full=Probable methyltransferase-like protein 15; AltName: Full=Methyltransferase 5 domain-containing protein 1 gi|26362646|dbj|BAB22281.2| unnamed protein product [Mus musculus] gi|109730967|gb|AAI17550.1| Methyltransferase 5 domain containing 1 [Mus musculus] gi|109732458|gb|AAI15927.1| Methyltransferase 5 domain containing 1 [Mus musculus] gi|123225263|emb|CAM17438.1| methyltransferase 5 domain containing 1 [Mus musculus] gi|123231531|emb|CAM24681.1| methyltransferase 5 domain containing 1 [Mus musculus] gi|123231533|emb|CAM25317.1| methyltransferase 5 domain containing 1 [Mus musculus] Length = 406 Score = 234 bits (598), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 138/334 (41%), Positives = 192/334 (57%), Gaps = 37/334 (11%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCGQET 77 H+PV++++V+ L P G+V LD TFG+GG++R+ + +V+ ALDRDP A + ++ Sbjct: 72 HIPVMVDQVVHCLAPQKGQVFLDMTFGSGGHTRAILQKEPDVMVYALDRDPVAYAIAEQL 131 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 R Y Q FSQ + + GV DG++ DLG SSMQ+D +RGFS +K GP Sbjct: 132 SRLYPTQIQALLGQFSQAEALLMKAGVQPGTIDGILMDLGCSSMQLDAPERGFSLRKDGP 191 Query: 133 LDMRMSCSGI----SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM +ASDVVN + + L IL GEEK A +IA AI++ R + P T Sbjct: 192 LDMRMDGDRYPDTPTASDVVNALDQQALASILRAYGEEKHAKKIASAIIQARSTYPISRT 251 Query: 189 QDLSSLIQ-----KTVYFSKN---NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 Q L+S++ VY K+ H AT++FQALRIFVNNE+ EL GLR+AEK LK Sbjct: 252 QQLASIVAGAFPPSAVYARKDLLQRSTHIATKTFQALRIFVNNELNELYAGLRTAEKFLK 311 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKV---MAVRHMIPSNAH---------------P 282 GG L+ +SFHSLEDR+VK+F S +++R + + P Sbjct: 312 TGGRLVALSFHSLEDRIVKRFLLGISMTERFNLSIRQKVKQTSQLDSDQETEERHSVRAP 371 Query: 283 AVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 ++ I KKV+ P +DV N R RSAKLRA ++ Sbjct: 372 LKWELIHKKVLTPEDQDVQDNPRGRSAKLRAAIK 405 >gi|83312939|ref|YP_423203.1| S-adenosyl-methyltransferase MraW [Magnetospirillum magneticum AMB-1] gi|123540765|sp|Q2W0I1|RSMH_MAGSA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|82947780|dbj|BAE52644.1| S-adenosyl-methyltransferase mraW [Magnetospirillum magneticum AMB-1] Length = 318 Score = 234 bits (597), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 131/296 (44%), Positives = 182/296 (61%), Gaps = 8/296 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78 H+PVLL +VIA L P V LD TFGAGGYSR+ + V A+DRDP AV+ G+ Sbjct: 6 HIPVLLAEVIAALAPRNDGVYLDGTFGAGGYSRAILAASACRVWAIDRDPTAVARGKLLE 65 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 +FS+ + F + + +GV DG+ D+GVSSMQID +RGFSF K GPLDM Sbjct: 66 EGSAGRFSMIEGRFGDMDSLLRQQGVNQVDGIALDIGVSSMQIDQPERGFSFAKDGPLDM 125 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RM G SA+D+VN +L I+ GEE+ + R+A AIV+ R+ F+ T +L+ ++ Sbjct: 126 RMETKGPSAADMVNDTPETELANIIYRYGEERLSRRVAKAIVEARRLKRFERTGELAEVV 185 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 +K V S + I PATR+FQALRI VN+E+ EL +GL +AE+ L GG L VV+FHSLED Sbjct: 186 RKVVPRSGDG-IDPATRTFQALRIAVNDELGELERGLEAAERLLAPGGHLAVVTFHSLED 244 Query: 256 RLVKKFFASRSGKVMAVRHMIP---SNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 R+VK F +RSG+ +P + A F +++K + P ++ N R+RS Sbjct: 245 RVVKSFLKARSGEAARPSRHVPQAQGSGPAASFALLSRKAIGPAPDEARANPRARS 300 >gi|119383335|ref|YP_914391.1| S-adenosyl-methyltransferase MraW [Paracoccus denitrificans PD1222] gi|262824738|sp|A1AZK1|RSMH_PARDP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|119373102|gb|ABL68695.1| S-adenosyl-methyltransferase MraW [Paracoccus denitrificans PD1222] Length = 322 Score = 234 bits (597), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 130/301 (43%), Positives = 184/301 (61%), Gaps = 9/301 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETM 78 H+PVLL ++ + P G + D TFGAGGY+R + G++ VI +DRDP + Sbjct: 6 HIPVLLGPLLRAVAPVEGTWV-DGTFGAGGYARGLLEQGADRVIGIDRDPAVFRMAEAWA 64 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138 +Y ++ L + TFS L D + VDGVV DLGVSSMQ+D +RGFSF + GPLDMRM Sbjct: 65 GEYGDRLRLVEGTFSDL-DSLAGGPVDGVVLDLGVSSMQLDQPERGFSFLRDGPLDMRMG 123 Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198 G +A++++N A + + +L + GEE+ + RIA AIV R P T LS ++ Sbjct: 124 GDGPTAAELLNTAPEQVIADVLYLYGEERASRRIAKAIVAAR---PLSRTGQLSDIVSAC 180 Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258 + K + HP+TR+FQA+RI+VN+E +L GL +AE+AL+ GG L VVSFHSLEDR+V Sbjct: 181 LPRPKPGQSHPSTRAFQAIRIWVNDEFGQLVAGLAAAERALRPGGKLAVVSFHSLEDRIV 240 Query: 259 KKFFASRSGKVMAVRHMIPSNA--HPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 K+F +RS P A PA F ++ + P + ++A N R+RSA LR G+R Sbjct: 241 KRFMQARSNSAGGGSRYAPEAAREEPA-FTLPFRRAIGPDEAELATNPRARSALLRVGIR 299 Query: 317 T 317 T Sbjct: 300 T 300 >gi|288958915|ref|YP_003449256.1| S-adenosyl-methyltransferase [Azospirillum sp. B510] gi|288911223|dbj|BAI72712.1| S-adenosyl-methyltransferase [Azospirillum sp. B510] Length = 324 Score = 234 bits (596), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 133/292 (45%), Positives = 179/292 (61%), Gaps = 9/292 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78 H+PVLL++VIA L P G + +D TFGAGGYSR+ + S VI +DRDP A+ G+ Sbjct: 7 HIPVLLDEVIAALAPRDGALYVDGTFGAGGYSRALLRSASCRVIGIDRDPAAIERGRVLA 66 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 +++ + + + F + + GVD GV D+GVSS QID +RGFSF+ GPLDM Sbjct: 67 QEFPGRLDVIEGRFGDMDQLLARHGVDRVDGVALDVGVSSPQIDEPERGFSFRFDGPLDM 126 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RM G +A+DVVN A+ +L IL LGEE+ A R+A AIV R+ AP + T L+ +I Sbjct: 127 RMGRDGPTAADVVNGADEGELADILYHLGEERMARRVARAIVAARREAPIERTARLADII 186 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + V K + I PATRSFQALRI VN+E+ EL +GL +AE L GG L VVSFHSLED Sbjct: 187 RSVVPKGKGDGIDPATRSFQALRIHVNDELGELRRGLSAAESLLAPGGRLAVVSFHSLED 246 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNA----HPAVFQSITKKVVVPTQEDVAFN 303 R VK F RS + P A HP+ F+ +++K V P++ + N Sbjct: 247 REVKAFLRERSSPPPSPSRHTPVTAVAAHHPS-FRLLSRKPVDPSEAEARNN 297 >gi|57239214|ref|YP_180350.1| S-adenosyl-methyltransferase MraW [Ehrlichia ruminantium str. Welgevonden] gi|58579172|ref|YP_197384.1| S-adenosyl-methyltransferase MraW [Ehrlichia ruminantium str. Welgevonden] gi|68565416|sp|Q5HB44|RSMH_EHRRW RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|57161293|emb|CAH58214.1| putative S-adenosyl-methyltransferase MraW [Ehrlichia ruminantium str. Welgevonden] gi|58417798|emb|CAI27002.1| S-adenosyl-methyltransferase mraW [Ehrlichia ruminantium str. Welgevonden] Length = 301 Score = 233 bits (595), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 131/304 (43%), Positives = 190/304 (62%), Gaps = 13/304 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78 H PVLL++++ +L+P G + +DATFG+GGYSR+ V A+D+D + + ++ Sbjct: 3 HTPVLLKEMLDILSPQNGGIYVDATFGSGGYSRAILNSADCQVYAIDQDEYTYTFYEKLS 62 Query: 79 RDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 D+ + F FS++Q + + K VDGVVFD+GVSSMQ++ RGFSF K+GPLDM Sbjct: 63 NDFPNRIHFFINKFSKIQQILNNVQIKKVDGVVFDIGVSSMQLEDASRGFSFSKNGPLDM 122 Query: 136 RMSCS--GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 RMS S G+ A VN + ++ ++ G EK + +IA AIV R TT +L+S Sbjct: 123 RMSTSLSGVDARMFVNTVSEVEMANVIYQYGGEKYSRKIARAIVNARNKNMINTTGELAS 182 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 +I+ V SKN+ I PATR+FQA+RI+VN E+EEL +G+ A L GG +IV+SFHSL Sbjct: 183 IIRSVVSRSKNHSIDPATRTFQAIRIWVNKELEELEKGIACAANILNQGGKIIVISFHSL 242 Query: 254 EDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 EDR+VK F GK + + ++ FQ I KK++ PT E++ N R+RSAKLR Sbjct: 243 EDRIVKVIFKLLCDGKSVNLLNL------GLGFQLINKKIIRPTAEEIHSNPRARSAKLR 296 Query: 313 AGMR 316 A ++ Sbjct: 297 AILK 300 >gi|58617225|ref|YP_196424.1| S-adenosyl-methyltransferase MraW [Ehrlichia ruminantium str. Gardel] gi|68565410|sp|Q5FH93|RSMH_EHRRG RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|58416837|emb|CAI27950.1| S-adenosyl-methyltransferase mraW [Ehrlichia ruminantium str. Gardel] Length = 301 Score = 233 bits (594), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 131/304 (43%), Positives = 190/304 (62%), Gaps = 13/304 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78 H PVLL++++ +L+P G + +DATFG+GGYSR+ V A+D+D + + ++ Sbjct: 3 HTPVLLKEMLDILSPQNGGIYVDATFGSGGYSRAILNSADCQVYAIDQDEYTYTFYEKLS 62 Query: 79 RDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 D+ + F FS++Q + + K VDGVVFD+GVSSMQ++ RGFSF K+GPLDM Sbjct: 63 HDFPNRIHFFINKFSKIQQILNNVQIKKVDGVVFDIGVSSMQLEDASRGFSFSKNGPLDM 122 Query: 136 RMSCS--GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 RMS S G+ A VN + ++ ++ G EK + +IA AIV R TT +L+S Sbjct: 123 RMSTSLSGVDARMFVNTVSEVEIANVIYQYGGEKYSRKIARAIVNARNKNMINTTGELAS 182 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 +I+ V SKN+ I PATR+FQA+RI+VN E+EEL +G+ A L GG +IV+SFHSL Sbjct: 183 IIRSVVSRSKNHSIDPATRTFQAIRIWVNKELEELEKGIACAANILNQGGKIIVISFHSL 242 Query: 254 EDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 EDR+VK F GK + + ++ FQ I KK++ PT E++ N R+RSAKLR Sbjct: 243 EDRIVKVMFKLLCDGKSVNLLNL------GLGFQLINKKIIRPTAEEIHSNPRARSAKLR 296 Query: 313 AGMR 316 A ++ Sbjct: 297 AILK 300 >gi|76779305|gb|AAI06187.1| Methyltransferase 5 domain containing 1 [Mus musculus] Length = 406 Score = 233 bits (593), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 137/334 (41%), Positives = 191/334 (57%), Gaps = 37/334 (11%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCGQET 77 H+PV++++V+ L P G+V LD TFG+GG++R+ + +V+ ALDRDP A + ++ Sbjct: 72 HIPVMVDQVVHCLAPQKGQVFLDMTFGSGGHTRAILQKEPDVMVYALDRDPVAYAIAEQL 131 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 R Y Q FSQ + + GV DG++ DLG SMQ+D +RGFS +K GP Sbjct: 132 SRLYPTQIQALLGQFSQAEALLMKAGVQPGTIDGILMDLGCPSMQLDAPERGFSLRKDGP 191 Query: 133 LDMRMSCSGI----SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM +ASDVVN + + L IL GEEK A +IA AI++ R + P T Sbjct: 192 LDMRMDGDRYPDTPTASDVVNALDQQALASILRAYGEEKHAKKIASAIIQARSTYPISRT 251 Query: 189 QDLSSLIQ-----KTVYFSKN---NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 Q L+S++ VY K+ H AT++FQALRIFVNNE+ EL GLR+AEK LK Sbjct: 252 QQLASIVAGAFPPSAVYARKDLLQRSTHIATKTFQALRIFVNNELNELYAGLRTAEKFLK 311 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKV---MAVRHMIPSNAH---------------P 282 GG L+ +SFHSLEDR+VK+F S +++R + + P Sbjct: 312 TGGRLVALSFHSLEDRIVKRFLLGISMTERFNLSIRQKVKQTSQLDSDQETEERHSVRAP 371 Query: 283 AVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 ++ I KKV+ P +DV N R RSAKLRA ++ Sbjct: 372 LKWELIHKKVLTPEDQDVQDNPRGRSAKLRAAIK 405 >gi|296448271|ref|ZP_06890165.1| S-adenosyl-methyltransferase MraW [Methylosinus trichosporium OB3b] gi|296254223|gb|EFH01356.1| S-adenosyl-methyltransferase MraW [Methylosinus trichosporium OB3b] Length = 338 Score = 232 bits (591), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 147/323 (45%), Positives = 197/323 (60%), Gaps = 10/323 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF-CKMGSNVIALDRDPFAVSCGQETM 78 H+PVLL++ +A L P G V LDATFGAGGY+R+ + V+ALDRDP A+ G + Sbjct: 11 HIPVLLDEAMAALGPRSGGVYLDATFGAGGYTRALLAHENTRVLALDRDPRAIRDGAALV 70 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + +L +A FS+L G+ DG+V D+GVSSMQ D +RGFSF+ GPLDM Sbjct: 71 AAAGGRLTLVEARFSELAQVAGRTGLAPLDGIVADIGVSSMQFDEAERGFSFRNDGPLDM 130 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RM SG SA+D+V +A + L IL GEE+ + RIA AIV R +TT L+++I Sbjct: 131 RMEGSGRSAADIVAEAEEEALADILYHYGEERASRRIARAIVHARLERKIETTGALAAII 190 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 ++ + IHPAT+SFQALRI VN+E+ EL L AE+ALK GG L++VSFHSLED Sbjct: 191 ERAAP-GRPGEIHPATKSFQALRIAVNDELGELVAALAGAERALKPGGKLVIVSFHSLED 249 Query: 256 RLVKKFFASRSGK--VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 R+VK+F A RSG+ + R P F K + P++ ++A N RSRSA+LR Sbjct: 250 RIVKQFLAERSGRGETRSRRLPGEPVPPPPTFIVDDFKPLAPSEREIAANPRSRSARLRV 309 Query: 314 GMRT--VERSIEDDSFVHLPRLP 334 RT R + D+ L RLP Sbjct: 310 ATRTDAPPRPV-GDALARLARLP 331 >gi|307294504|ref|ZP_07574346.1| S-adenosyl-methyltransferase MraW [Sphingobium chlorophenolicum L-1] gi|306878978|gb|EFN10196.1| S-adenosyl-methyltransferase MraW [Sphingobium chlorophenolicum L-1] Length = 321 Score = 231 bits (590), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 135/303 (44%), Positives = 196/303 (64%), Gaps = 9/303 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+PVL+E+V+ L+ PG+ +D TFGAGGYS + G+ V A DRDP A+ GQ + Sbjct: 14 HIPVLIEEVLHALSINPGEAHVDGTFGAGGYSSAMAAKGAKVFAFDRDPDAIREGQ-ALA 72 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 D K +L FS+++ + ++GV GV D+GVSSMQ+D +RGFSFQ GPLDM Sbjct: 73 DEK-GITLIAGEFSRMEALLAERGVTSVAGVTLDIGVSSMQLDRPERGFSFQGDGPLDMT 131 Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 MS SG++A+D +N A +++ IL GEE ++ R+A AIV+ R P + T L+++++ Sbjct: 132 MSQSGMNAADFLNNAPEEEIANILYRYGEEPRSRRVAKAIVEAR---PLERTGQLANIVR 188 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 K + +++ PATR+FQA+RI VN E+EEL +GL +AE L+ GG L +V+FHSLEDR Sbjct: 189 KALGHKPHDKKDPATRTFQAIRIHVNRELEELERGLEAAEAILEEGGRLAIVTFHSLEDR 248 Query: 257 LVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 +VK+F +RS G+ RHM A PA + K V P + ++A N R+RSA LR+ + Sbjct: 249 IVKQFLRNRSGGEAGGSRHMPQKQAGPAPTFAKPAKAVRPGEAELARNPRARSATLRSAI 308 Query: 316 RTV 318 RT Sbjct: 309 RTA 311 >gi|55981045|ref|YP_144342.1| S-adenosyl-methyltransferase MraW [Thermus thermophilus HB8] gi|68565453|sp|Q5SJD8|RSMH_THET8 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|56966831|pdb|1WG8|A Chain A, Crystal Structure Of A Predicted S-Adenosylmethionine- Dependent Methyltransferase Tt1512 From Thermus Thermophilus Hb8. gi|56966832|pdb|1WG8|B Chain B, Crystal Structure Of A Predicted S-Adenosylmethionine- Dependent Methyltransferase Tt1512 From Thermus Thermophilus Hb8. gi|55772458|dbj|BAD70899.1| conserved hypothetical protein [Thermus thermophilus HB8] Length = 285 Score = 231 bits (590), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 128/297 (43%), Positives = 180/297 (60%), Gaps = 26/297 (8%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 HVPVL ++ + LL PG V +DAT G G++R + G VI LD+DP AV+ + Sbjct: 6 HVPVLYQEALDLLAVRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKGL-- 63 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + ++ Q F L+ ++ GV DG++ DLGVSS +D RGFS+QK GPLDMR Sbjct: 64 -HLPGLTVVQGNFRHLKRHLAALGVERVDGILADLGVSSFHLDDPSRGFSYQKEGPLDMR 122 Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 M G +A +VVN+ ++ L R+L LGEE QA RIA AIV R+ AP +TT L+ +++ Sbjct: 123 MGLEGPTAKEVVNRLPLEALARLLRELGEEPQAYRIARAIVAAREKAPIETTTQLAEIVR 182 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 K V F + HPA ++FQALRI+VN+E+ L + L A + L GG L+V++FHSLEDR Sbjct: 183 KAVGFRRAG--HPARKTFQALRIYVNDELNALKEFLEQAAEVLAPGGRLVVIAFHSLEDR 240 Query: 257 LVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 +VK+F KV+ TKK +VP++++ A N R+RSAKLRA Sbjct: 241 VVKRFLRESGLKVL------------------TKKPLVPSEKEAAQNPRARSAKLRA 279 >gi|157803594|ref|YP_001492143.1| S-adenosyl-methyltransferase MraW [Rickettsia canadensis str. McKiel] gi|167011837|sp|A8EYC5|RSMH_RICCK RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|157784857|gb|ABV73358.1| S-adenosyl-methyltransferase MraW [Rickettsia canadensis str. McKiel] Length = 308 Score = 231 bits (589), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 125/306 (40%), Positives = 183/306 (59%), Gaps = 9/306 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQETM 78 H+PV+L +++A L P GK LD TFGAGGYS++ + V ALDRDP + + Sbjct: 5 HIPVMLNEMLANLAPQDGKSYLDCTFGAGGYSKAILESCNCYVTALDRDPNVIKRAERIK 64 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138 ++Y +F + F+ + +K DG+V DLGVSSMQ+D DRGFSF PLDMRMS Sbjct: 65 QNYSTRFDFIETNFADSFAKLKEKKFDGIVLDLGVSSMQLDIADRGFSFLHDSPLDMRMS 124 Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198 G+SA + +N K+L I+ G+E + RIA IV+ R++A +T L+ +++ + Sbjct: 125 GQGLSAEEFINTVEEKELADIIYKYGDESFSRRIAKRIVEYRKTARINSTGKLAEIVRNS 184 Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258 + F K +I PAT++FQA+RI++N+E+ EL + L + + L G L++VSFHSLEDR+V Sbjct: 185 IGFRK-GKIDPATKTFQAIRIYINDELRELERFLANVQNILNKDGRLVIVSFHSLEDRIV 243 Query: 259 KKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 K FF S K +A S +P + + IT K P+ ++V N R+RSAKLRA Sbjct: 244 KHFFKENSEKPVARSKY--SKDNPVIDPNKWLKIITNKAEAPSDKEVELNVRARSAKLRA 301 Query: 314 GMRTVE 319 E Sbjct: 302 AKAIYE 307 >gi|289547926|ref|YP_003472914.1| S-adenosyl-methyltransferase MraW [Thermocrinis albus DSM 14484] gi|289181543|gb|ADC88787.1| S-adenosyl-methyltransferase MraW [Thermocrinis albus DSM 14484] Length = 290 Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 135/304 (44%), Positives = 184/304 (60%), Gaps = 24/304 (7%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74 I H PVLLE LL GK+ +D T GAGG++R + + VI +DRDP A+ Sbjct: 2 IMHHFPVLLETATDLLLGNGGKLYVDCTVGAGGHTRRILEKNPQAYVIGIDRDPQALKLA 61 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +E +R+++ +FSL+ A F L + + +GV DG +FDLG+S MQ+ RGFSFQ+ Sbjct: 62 EENLREFEGRFSLYHANFVHLDEVLLQEGVEQVDGFLFDLGMSMMQLKSA-RGFSFQRDE 120 Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM S I+A VVN+ + +DL RIL GEE ASRIA AIV RR+ P +TT + Sbjct: 121 FLDMRMDPSDPITAYHVVNRYSQRDLERILREYGEEPYASRIARAIVLRRKEKPIETTGE 180 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L ++ V + + RIHPATR FQA+RI VN E+ L + L K L+ GG L+V+SF Sbjct: 181 LVQIVLSVVPY-RRGRIHPATRVFQAIRIEVNGELRNLKEALPKTLKFLRKGGRLVVISF 239 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDR+VK FF S ++ + +TKK + P++E++ N SRSAK Sbjct: 240 HSLEDRIVKNFFKEHSHEI----------------KPLTKKPITPSREEIEKNPPSRSAK 283 Query: 311 LRAG 314 LRAG Sbjct: 284 LRAG 287 >gi|157825941|ref|YP_001493661.1| S-adenosyl-methyltransferase MraW [Rickettsia akari str. Hartford] gi|167011835|sp|A8GP28|RSMH_RICAH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|157799899|gb|ABV75153.1| S-adenosyl-methyltransferase MraW [Rickettsia akari str. Hartford] Length = 306 Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 123/303 (40%), Positives = 186/303 (61%), Gaps = 5/303 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQETM 78 H+PV+L +V+ +L+P G+ LD TFGAGGYS++ + V+ALDRDP + +E Sbjct: 5 HIPVMLSEVLKVLDPKGGEFYLDCTFGAGGYSKAILESCDCYVVALDRDPNVIKKAEEIK 64 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138 ++Y E+F F+ + +K DG+V DLGVSSMQ+D DRGFSF GPLDMRMS Sbjct: 65 QNYVERFDFIATNFADSFAKLKEKQFDGIVLDLGVSSMQLDVADRGFSFLHDGPLDMRMS 124 Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198 G SA + VN K++ I+ G E + RIA +IV+ R++A +T L+ +++ + Sbjct: 125 GQGFSAEEFVNTLEEKEIADIIYKYGNESFSRRIAKSIVEYRKTARIDSTGKLAEIVRSS 184 Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258 + F K +I PAT++FQA+RI++N+E+ EL + L + + LK G L+VVSFHSLED ++ Sbjct: 185 IGFRK-GKIDPATKTFQAIRIYINDELGELERFLMNVKNILKKDGRLVVVSFHSLEDMII 243 Query: 259 KKFFASRSGKVMAVRHMIPSN--AHPAVF-QSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 K FF S K +A + P + + IT K + P+ +++ N R+RSAKLR Sbjct: 244 KNFFKENSEKPVARSKYAKDDIIIDPNKWLRIITNKALAPSDKEIRLNIRARSAKLRTAK 303 Query: 316 RTV 318 + + Sbjct: 304 KIL 306 >gi|291384760|ref|XP_002709072.1| PREDICTED: hypothetical protein [Oryctolagus cuniculus] Length = 407 Score = 230 bits (587), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 138/335 (41%), Positives = 193/335 (57%), Gaps = 38/335 (11%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCGQET 77 H+PV++++V+ L P G+V LD TFG+GG+SR+ + S++ ALDRDP A + ++ Sbjct: 72 HIPVMVDEVVRCLAPQKGQVFLDMTFGSGGHSRAILQKESDITLYALDRDPTAYAIAEQL 131 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 Y +Q FSQ + + GV DGV+ DLG SSMQ+D +RGFS +K GP Sbjct: 132 SDLYPKQIRAMLGQFSQAEALLTKAGVQPGTFDGVLLDLGCSSMQLDAPERGFSIRKDGP 191 Query: 133 LDMRMSCSGI----SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM +A+DVVN + + L IL GEEK A +IA AIV+ R P T Sbjct: 192 LDMRMDGGRYPDMPTAADVVNALDQQALASILRTYGEEKHAKKIASAIVQARSIYPITRT 251 Query: 189 QDLSSLIQ-----KTVYFSKN---NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 Q L+S++ +Y K+ H AT++FQALRIFVNNE+ EL GL++A+K L+ Sbjct: 252 QQLASIVAGAFPPSAIYARKDLLQRSTHIATKTFQALRIFVNNELNELYTGLKTAQKFLR 311 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKV---MAVRHMI---------PSNAH------- 281 GG L+ +SFHSLEDR+VK+F S ++VR + P N Sbjct: 312 PGGRLVALSFHSLEDRIVKRFLLGISMTERFNLSVRQKVVQASQLSSGPENKEEVSAGRA 371 Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 P +++ I KKV+ P +DV N R RSAKLRA ++ Sbjct: 372 PLMWELINKKVLTPEDQDVQENPRGRSAKLRAAIK 406 >gi|187607601|ref|NP_001120214.1| methyltransferase like 15 [Xenopus (Silurana) tropicalis] gi|166796910|gb|AAI59379.1| LOC100145263 protein [Xenopus (Silurana) tropicalis] Length = 375 Score = 230 bits (586), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 140/336 (41%), Positives = 188/336 (55%), Gaps = 36/336 (10%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVS 72 HT+ HVPV++ +V L P G+ ILD TFGAGG++ S K SN V+ALDRDP A + Sbjct: 41 HTVL-HVPVMVNEVTECLAPQEGQTILDLTFGAGGHTTSILKRASNIKVLALDRDPAAFA 99 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSF 127 Q+ FS+ +D + GV DGV+ D G SSMQ D DRGFS Sbjct: 100 IAQQLAHSCGHNIQPLLGRFSESKDLLTSAGVEPGSIDGVLLDAGCSSMQFDTPDRGFSL 159 Query: 128 QKSGPLDMRMSCSGI----SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 + GPLDMRM +A+DVVN + + L IL GEE+ A +IA AIV+ R Sbjct: 160 SRDGPLDMRMDGDRYPDMPTAADVVNALDQQALASILKTYGEERHAKKIASAIVQARSIY 219 Query: 184 PFQTTQDLSSLIQKTVYFSKNNRI----HPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 P TQ L+S++ ++ + + H AT++FQALRIFVNNE+ EL GL +AE L Sbjct: 220 PITRTQQLASIVTGASIQARTDLLQRPAHVATKTFQALRIFVNNELNELHAGLSTAETFL 279 Query: 240 KAGGLLIVVSFHSLEDRLVKKFF-------------------ASRSGKVMAVRHMIPSNA 280 + GG L+V+SFHSLEDR+VK+F R+ K M + S++ Sbjct: 280 RPGGRLVVISFHSLEDRIVKRFLHGIDMADKPNLAARHKIRQGQRNSKEMEDEEFLMSHS 339 Query: 281 HPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 +PA + I KKV+ P +DV N R RSAKLRA ++ Sbjct: 340 NPA-WTVIQKKVLTPQYQDVLENPRGRSAKLRAAIK 374 >gi|288818267|ref|YP_003432615.1| S-adenosyl-methyltransferase [Hydrogenobacter thermophilus TK-6] gi|288787667|dbj|BAI69414.1| S-adenosyl-methyltransferase [Hydrogenobacter thermophilus TK-6] gi|308751864|gb|ADO45347.1| S-adenosyl-methyltransferase MraW [Hydrogenobacter thermophilus TK-6] Length = 287 Score = 229 bits (585), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 131/303 (43%), Positives = 182/303 (60%), Gaps = 24/303 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H+PVLL++ + LL G V +DAT G GG+++ + VI +DRDP A+ +E Sbjct: 2 HIPVLLKESVDLLVWRTGGVYVDATVGLGGHTKGILERDPRAFVIGIDRDPHALKLAEEN 61 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++D++ +F L+QA F L + + +G VDG +FDLGVS +Q+ RGFSFQ+ PLD Sbjct: 62 LKDFEGRFCLYQANFRYLDEVLKQEGIKEVDGFLFDLGVSMLQLKS-PRGFSFQRDEPLD 120 Query: 135 MRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM+ +A V+N + +DL RIL GEE ASRIA AIV R P +TT +L S Sbjct: 121 MRMNPEDKKTAYQVINTYSERDLVRILKEYGEEPNASRIARAIVMHRTKKPIETTGELVS 180 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 +I + + + R+HPATR FQA+RI VN E+ L + L + LK GG L+V+SFHSL Sbjct: 181 IITSLIPY-RRGRVHPATRIFQAIRIEVNEELISLEEALEKTPRFLKKGGRLVVISFHSL 239 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 EDR+VK FF H +F+ +TKK + PT +++ N SRSAKLRA Sbjct: 240 EDRIVKNFFKR----------------HTDIFKLLTKKPIRPTLQEMKKNPASRSAKLRA 283 Query: 314 GMR 316 G R Sbjct: 284 GER 286 >gi|226355756|ref|YP_002785496.1| S-adenosyl-methyltransferase MraW [Deinococcus deserti VCD115] gi|263447379|sp|C1D1L8|RSMH_DEIDV RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|226317746|gb|ACO45742.1| putative Methyltransferase [Deinococcus deserti VCD115] Length = 300 Score = 229 bits (584), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 134/309 (43%), Positives = 180/309 (58%), Gaps = 38/309 (12%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET-- 77 H VL +V+ L P PGK I+D T G G++R + G++V +D+DPFA+ +E Sbjct: 15 HTSVLSAEVLEALAPTPGKTIVDGTLGGAGHTRLLLEAGAHVYGIDQDPFALDRAREAGL 74 Query: 78 ------MRDYKEQFSLF-QATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +Y++ SL QA SQ VDG++ D+GVSS Q+D RGFS+ Sbjct: 75 PNLTVLQGNYRDMVSLLEQAGVSQ---------VDGILLDIGVSSFQLDDAGRGFSYHTE 125 Query: 131 GPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRMS SG SA+DVVN +DL I+ GE++ + RIA AI + RQ AP +TT Sbjct: 126 APLDMRMSQSGESAADVVNTYEEEDLAAIIYEYGEDRLSRRIARAIGQARQKAPIETTVQ 185 Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ ++++ FSK IHPA R+FQALRI VN+E+ L GL++AE L+ GG L V+S Sbjct: 186 LAEIVKRAYPGFSKG--IHPARRTFQALRIHVNDELGALRDGLQAAETLLRPGGRLAVIS 243 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDR+VK+F V Q +TK+ VV + E+ A N RSRSA Sbjct: 244 FHSLEDRIVKRFLLGSE-----------------VLQPLTKRPVVASDEEQAINPRSRSA 286 Query: 310 KLRAGMRTV 318 KLRA R V Sbjct: 287 KLRAAERVV 295 >gi|157828717|ref|YP_001494959.1| S-adenosyl-methyltransferase MraW [Rickettsia rickettsii str. 'Sheila Smith'] gi|157801198|gb|ABV76451.1| S-adenosyl-methyltransferase MraW [Rickettsia rickettsii str. 'Sheila Smith'] Length = 299 Score = 229 bits (584), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 127/301 (42%), Positives = 183/301 (60%), Gaps = 7/301 (2%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQETMRDYK 82 +L +++ L+P G+ LD TFGAGGYS++ + V ALDRDP + +E ++Y Sbjct: 1 MLNEMLEALSPKAGESYLDCTFGAGGYSKAILESCNCYVTALDRDPNVIKRAEEIQQNYG 60 Query: 83 EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI 142 E+F + F+ + +K DG+V DLGVSSMQ+D DRGFSF GPLDMRMS G+ Sbjct: 61 ERFDFVETNFADSFAKLKEKKFDGIVLDLGVSSMQLDIADRGFSFLHDGPLDMRMSGQGL 120 Query: 143 SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS 202 SA + VN A K+L ++ G+E + RIA IV+ R++A +T L+ +++ ++ F Sbjct: 121 SAEEFVNAAEEKELADVIYKYGDESFSRRIAKRIVEYRKTARIDSTGKLAEIVRSSIGFR 180 Query: 203 KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF 262 K +I PAT++FQA+RI+VN+E+ EL Q L + + LK G L+VVSFHSLEDR+VK FF Sbjct: 181 K-GKIDPATKTFQAIRIYVNDELGELEQFLVNVKNILKKDGRLVVVSFHSLEDRIVKNFF 239 Query: 263 ASRSGKVMAVRHMIPSNAHP----AVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318 S K + VR + + IT K + P+ ++V N R+RSAKLRA Sbjct: 240 KENSEKPV-VRSKYAKDDMTIDPNKWLKIITNKALAPSDKEVGLNIRARSAKLRAAKAIY 298 Query: 319 E 319 E Sbjct: 299 E 299 >gi|313661472|ref|NP_001186351.1| putative S-adenosyl-L-methionine-dependent methyltransferase METT5D1 [Gallus gallus] Length = 409 Score = 229 bits (583), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 137/335 (40%), Positives = 187/335 (55%), Gaps = 38/335 (11%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCGQET 77 HVPV++E+V++ L+P G+ LD TFGAGG+S + + SN+ ALDRDP A Q+ Sbjct: 74 HVPVMMEEVVSCLSPQSGQCFLDMTFGAGGHSTALLEKASNITIYALDRDPTAYKIAQQL 133 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 Y +Q FSQ + + GV DGV+ D G SSMQ D +RGFS QK GP Sbjct: 134 SESYPKQIQALLGQFSQSEALLISSGVEPGTLDGVLLDAGCSSMQFDTPERGFSLQKDGP 193 Query: 133 LDMRMSCSGI----SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM +A+DVVN + + L IL GEEK A +IA AIV+ R P T Sbjct: 194 LDMRMDSDRYPDMPTAADVVNALDQQALASILRTYGEEKHAKKIASAIVQARSIYPITRT 253 Query: 189 QDLSSLIQ-----KTVYFSKN---NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 Q L+S++ +Y K+ H AT++FQ LRIFVN+E+ EL GL++AEK LK Sbjct: 254 QQLASIVAGAFPASALYARKDLLQRPTHIATKTFQGLRIFVNDELHELFIGLKTAEKFLK 313 Query: 241 AGGLLIVVSFHSLEDRLVKKF-----------FASRSGKVMAVR--------HMIPSNAH 281 GG L+ +SFHSLEDR++K+F S+ A++ H P Sbjct: 314 PGGRLVALSFHSLEDRIIKRFLHGIDMTEKYNLGSKQKIRQALKNCSKEEDTHEFPHGKS 373 Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 + + I KKV+ P +D+ N R+RSAKLRA ++ Sbjct: 374 NSKWTFIQKKVLTPQAKDILTNPRARSAKLRAAVK 408 >gi|149022854|gb|EDL79748.1| similar to RIKEN cDNA 0610027B03, isoform CRA_a [Rattus norvegicus] gi|149022855|gb|EDL79749.1| similar to RIKEN cDNA 0610027B03, isoform CRA_a [Rattus norvegicus] Length = 406 Score = 228 bits (581), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 135/334 (40%), Positives = 189/334 (56%), Gaps = 37/334 (11%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCGQET 77 H+PV++++V+ L P G+V LD TFG+GG+S++ + +V ALDRDP A + + Sbjct: 72 HIPVMVDEVVQCLTPQKGQVFLDMTFGSGGHSKAILQKEPDVTVYALDRDPVAFTLAERL 131 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 Y Q FSQ + + GV DGV+ DLG SSMQ+D +RGFS +K GP Sbjct: 132 SEMYPTQIHAMLGQFSQAETLLMKAGVQPGTVDGVLLDLGCSSMQLDAPERGFSLRKDGP 191 Query: 133 LDMRMSCSGI----SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM +A+DVVN + + L IL GEEK A +IA AI++ R + P T Sbjct: 192 LDMRMDGDRYPDMPTAADVVNALDQQALASILRAYGEEKHAKKIASAIIQARSTYPISRT 251 Query: 189 QDLSSLIQ-----KTVYFSKN---NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 Q L+S++ +Y K+ H AT++FQALRIFVNNE+ EL GLR+A+K LK Sbjct: 252 QQLASIVAGAFPPSAIYARKDLLQRSTHIATKTFQALRIFVNNELNELYTGLRTAQKFLK 311 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKV---MAVRHMIPSNAH---------------P 282 GG L+ +SFHSLEDR+VK+F S +++R + + P Sbjct: 312 PGGRLVALSFHSLEDRIVKRFLLGISMTERFNLSIRQKVRQTSQMDSDHEIEERRCVRAP 371 Query: 283 AVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 ++ I KKV+ P +DV N R RSAKLRA ++ Sbjct: 372 LKWELIHKKVLTPEDQDVQANPRGRSAKLRAAIK 405 >gi|149910619|ref|ZP_01899257.1| S-adenosyl-methyltransferase [Moritella sp. PE36] gi|149806347|gb|EDM66322.1| S-adenosyl-methyltransferase [Moritella sp. PE36] Length = 313 Score = 228 bits (581), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 129/303 (42%), Positives = 189/303 (62%), Gaps = 11/303 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQE 76 HV VLL + +A L+ P + +D TFG GG+SR ++G N +IA+DRDP A++ G E Sbjct: 7 HVSVLLNETVAGLDLKPDGIYIDGTFGRGGHSRFILSQLGENGRLIAIDRDPEAIAVG-E 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 ++ +F + FS + DY+ +KG +DGV+ DLGVSS Q+D RGFSF + GP Sbjct: 66 ALKLEDPRFDIVHGPFSGIADYMENKGLTGHIDGVLLDLGVSSPQLDDASRGFSFLRDGP 125 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM SGISA+ + A+ D+ +L + GEE+ A +IA A+V R PF+TT L Sbjct: 126 LDMRMDPTSGISAAKWLATADYDDIVWVLKVFGEERFARKIARAVVFDRDDKPFETTSQL 185 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +SLI + V SK HPATRSFQA+RI++N+E+EE+ + L A + LK+GG L V+SFH Sbjct: 186 ASLICRVVPKSKKETKHPATRSFQAIRIYINSELEEIERALAGALQCLKSGGRLSVISFH 245 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK+F +R +V ++ K++ P+++++ N R+RS+ Sbjct: 246 SLEDRIVKQFIRKQARGKEVPYGLPIMQEEIDKTRTMKAIGKMLKPSEDELELNPRARSS 305 Query: 310 KLR 312 LR Sbjct: 306 VLR 308 >gi|46199019|ref|YP_004686.1| mraW protein [Thermus thermophilus HB27] gi|85701363|sp|P62476|RSMH_THET2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|46196643|gb|AAS81059.1| mraW protein [Thermus thermophilus HB27] Length = 285 Score = 228 bits (581), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 127/297 (42%), Positives = 179/297 (60%), Gaps = 26/297 (8%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 HVPVL ++ + LL PG V +DAT G G++R + G VI LD+DP AV+ + Sbjct: 6 HVPVLYQEALDLLAVRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKGL-- 63 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + ++ Q F L+ ++ GV DG++ DLGVSS +D RGFS+QK GPLDMR Sbjct: 64 -HLPGLTVVQGNFRHLKRHLAALGVERVDGILADLGVSSFHLDDPSRGFSYQKEGPLDMR 122 Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 M G +A +VVN+ ++ L R+L LGEE QA RIA AIV R+ AP +TT L+ +++ Sbjct: 123 MGLEGPTAKEVVNRLPLEALARLLRELGEEPQAYRIARAIVAAREKAPIETTTQLAEIVR 182 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 K V F + HPA ++FQALRI+VN+E+ L + L A + L G L+V++FHSLEDR Sbjct: 183 KAVGFRRAG--HPARKTFQALRIYVNDELNALKEFLEQAAEVLAPRGRLVVIAFHSLEDR 240 Query: 257 LVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 +VK+F KV+ TKK +VP++++ A N R+RSAKLRA Sbjct: 241 VVKRFLRESGLKVL------------------TKKPLVPSEKEAAQNPRARSAKLRA 279 >gi|312794111|ref|YP_004027034.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181251|gb|ADQ41421.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor kristjanssonii 177R1B] Length = 307 Score = 228 bits (580), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 126/307 (41%), Positives = 195/307 (63%), Gaps = 10/307 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 +H+PVLLE+ ++ L P + +DATFG GG+S+ + SN ++A+D+D A+ G+ Sbjct: 3 EHIPVLLEESVSFLITNPDGIYVDATFGLGGHSKRILEKLSNKGFLVAIDKDLEAIELGK 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + YK + ++FS++ + + G+ DG++FD GVSS+Q+D +RGFS+ K Sbjct: 63 RRLEGYK-NIKIVHSSFSKVDEVLESLGIEKIDGILFDFGVSSLQLDKQERGFSYSKEAF 121 Query: 133 LDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + S ++A DV+N + +DL RI+ GEE+ A RIA AIV+RR++ P +TT +L Sbjct: 122 LDMRMDTTSKLTAYDVINFYSQEDLERIIREYGEERFARRIAKAIVERRRNKPIETTTEL 181 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 SSLI V K+ HPA R+FQA+RI VN E+EE+ L + + LK+GG + +SFH Sbjct: 182 SSLISSVVPKPKDGS-HPAQRTFQAIRIEVNRELEEIKIALEKSLRFLKSGGRICAISFH 240 Query: 252 SLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK+FF S + + + + + + ITKK +VP++E++ N+RS SAK Sbjct: 241 SLEDRIVKEFFKFHSLECICPKDIPVCRCGKKKELEIITKKPIVPSKEEIERNKRSHSAK 300 Query: 311 LRAGMRT 317 LR + Sbjct: 301 LRVAQKV 307 >gi|312128123|ref|YP_003992997.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor hydrothermalis 108] gi|311778142|gb|ADQ07628.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor hydrothermalis 108] Length = 307 Score = 228 bits (580), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 129/307 (42%), Positives = 192/307 (62%), Gaps = 10/307 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 +H+PVLLE+ ++ L P + +DATFG GG+S+ + SN ++A+D+D A+ G+ Sbjct: 3 EHIPVLLEESVSFLITNPDGIYVDATFGLGGHSKRILEKLSNKGFLVAIDKDLEAIELGK 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + YK + ++FS++ + + G+ DG++FD GVSS+Q+D +RGFS+ K Sbjct: 63 RRLEAYK-NIKIVHSSFSKVDEVLESLGIAKIDGILFDFGVSSLQLDKQERGFSYSKEAF 121 Query: 133 LDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + S ++A DVVN + +DL RI+ GEE+ A RIA AIV+RR P +TT DL Sbjct: 122 LDMRMDTTSKLTAYDVVNFYSQEDLERIIREYGEERFARRIAKAIVERRSKKPIETTTDL 181 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 SSLI V K+ HPA R+FQA+RI VN E+EE+ L + LK+GG + +SFH Sbjct: 182 SSLISSLVPKPKDGS-HPAQRTFQAIRIEVNRELEEIKVALEKSLGFLKSGGRICAISFH 240 Query: 252 SLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK+FF S + + + + + + ITKK +VP++E++ NRRS SAK Sbjct: 241 SLEDRIVKEFFKFHSLECICPKDIPVCRCGKKKQLEIITKKPIVPSKEEIERNRRSHSAK 300 Query: 311 LRAGMRT 317 LR + Sbjct: 301 LRVAQKV 307 >gi|224050409|ref|XP_002191093.1| PREDICTED: similar to methyltransferase 5 domain containing 1 [Taeniopygia guttata] Length = 443 Score = 228 bits (580), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 135/335 (40%), Positives = 190/335 (56%), Gaps = 38/335 (11%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H+PV+LE+V+ L+P PG+ LD TFGAGG++ + + S+ V ALDRDP A Q+ Sbjct: 108 HIPVMLEEVVNCLSPQPGQRFLDMTFGAGGHTAALLERASDISVYALDRDPTAHRMAQQL 167 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + Y +Q FSQ + + GV DGV+ D G SSMQ+D +RGFS QK GP Sbjct: 168 AQAYPKQLQPLLGRFSQSEALLISSGVEPGSLDGVLLDAGCSSMQLDTPERGFSLQKDGP 227 Query: 133 LDMRMS---CSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM C + +A+DVVN + + L +L GEE+ A RIA AIV+ R P T Sbjct: 228 LDMRMDHDRCPAMATAADVVNALDQRALASVLSAYGEERHARRIAAAIVQARSIYPITRT 287 Query: 189 QDLSSLIQ-----KTVYFSKN---NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 + L+S++ +Y K+ +H AT++FQ LRIFVN+E+ EL GL++AEK L+ Sbjct: 288 RQLASIVAGAFPASALYARKDLLQRPVHVATKTFQGLRIFVNDELHELLIGLKTAEKFLR 347 Query: 241 AGGLLIVVSFHSLEDRLVKKFFAS-------RSGKVMAVRHMI------------PSNAH 281 GG L+ +SFHSLEDR++K+F G +R + P Sbjct: 348 PGGRLVALSFHSLEDRIIKRFLHGIDITEKYNLGSKQKIRQALKNASKGEDTQGSPCGKS 407 Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 + + SI KKV+ P +D+ N R RSAKLRA ++ Sbjct: 408 NSKWISIQKKVLTPQAKDIQINPRGRSAKLRAAIK 442 >gi|171913327|ref|ZP_02928797.1| S-adenosyl-methyltransferase MraW [Verrucomicrobium spinosum DSM 4136] Length = 331 Score = 228 bits (580), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 132/300 (44%), Positives = 178/300 (59%), Gaps = 9/300 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+PVL +V+A L PAPGKVILD T G GG++ + G+ VI LD+D A+S E ++ Sbjct: 27 HLPVLPAEVVAALAPAPGKVILDGTLGGGGHTSLLLQAGAEVIGLDQDTDALSHAGERLK 86 Query: 80 DYKE--QFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 Y QF Q+ F + G+ DG++ DLGVSS Q+D RGFSF GPLD Sbjct: 87 AYAATGQFRSVQSNFRDFPAVLQALGITALDGLLVDLGVSSYQLDVASRGFSFMHEGPLD 146 Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM+ G +A+D+VN+ +L RIL GEE+Q+ RI A+V+RR+ PF TT DL+S Sbjct: 147 MRMNTGGGRTAADLVNEDEPAELERILWEYGEERQSRRIVRALVQRREQRPFTTTSDLAS 206 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 I + + + HPAT +FQ LRI VN+E+ LA L +A LK GG L V+SFHSL Sbjct: 207 AIAGVI--PRRGKTHPATLTFQGLRIAVNDELAALADFLHAAPAWLKPGGRLAVISFHSL 264 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPA-VFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 EDR+VK+ F S + + +P + + +K T E+V N RSRSAKLR Sbjct: 265 EDRMVKQAFQRLSTEWLDRPEWPEPRRNPEHCLRLLHRKPQEATDEEVKRNPRSRSAKLR 324 >gi|294012787|ref|YP_003546247.1| S-adenosyl-methyltransferase [Sphingobium japonicum UT26S] gi|292676117|dbj|BAI97635.1| S-adenosyl-methyltransferase [Sphingobium japonicum UT26S] Length = 326 Score = 227 bits (579), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 134/302 (44%), Positives = 194/302 (64%), Gaps = 9/302 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+PVL+++V+ L PG+V +D TFGAGGYS + G+ V A DRDP A+ GQ Sbjct: 14 HIPVLIDEVLDALAINPGEVHVDGTFGAGGYSGAMADRGARVFAFDRDPDAIREGQALAE 73 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + + +L FS++++ + ++GV GV D+GVSSMQ+D +RGFSFQ GPLDM Sbjct: 74 E--KGVTLIAGEFSRMEELLAERGVTSVSGVTLDIGVSSMQLDRPERGFSFQGDGPLDMT 131 Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 MS SG+SA+D +N A +++ IL GEE ++ R+A AIV+ R P + T L+++++ Sbjct: 132 MSRSGMSAADFLNNAPEQEIADILYRYGEEPRSRRVAKAIVEAR---PLERTGQLANVVR 188 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 K + +++ PATR+FQA+RI VN E+EEL +GL +AE L+ GG L VV+FHSLEDR Sbjct: 189 KALGHKPHDKKDPATRTFQAIRIHVNRELEELERGLEAAEAILEEGGRLAVVTFHSLEDR 248 Query: 257 LVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 +VK+F +RSG + RH+ + PA K V P ++A N RSRSA LR+ + Sbjct: 249 IVKQFLRNRSGSEASGSRHLPQRQSGPAPTFERPAKAVRPGMVELARNPRSRSATLRSAV 308 Query: 316 RT 317 RT Sbjct: 309 RT 310 >gi|51473750|ref|YP_067507.1| S-adenosyl-methyltransferase MraW [Rickettsia typhi str. Wilmington] gi|116241372|sp|Q68WG7|RSMH_RICTY RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|51460062|gb|AAU04025.1| S-adenosyl-methyltransferase MraW [Rickettsia typhi str. Wilmington] Length = 306 Score = 226 bits (577), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 123/304 (40%), Positives = 188/304 (61%), Gaps = 7/304 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQETM 78 H+PV+L +V+ +L P + LD TFGAGGYS + K +V +LD DP + ++ Sbjct: 5 HIPVMLSEVLEVLAPKGYESYLDCTFGAGGYSNAILKSCYCSVTSLDCDPHVIERVEQIK 64 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138 +DY E+FS + F+ + + DG+V DLGVSSMQ+D RGFSF GPLDMRMS Sbjct: 65 QDYGERFSFIKTNFADSFGKLKQQKFDGIVMDLGVSSMQLDIAGRGFSFLYDGPLDMRMS 124 Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198 G SA + VN A+ ++++ ++ G E + RIA I+K R+ A +T+ L+ +++ + Sbjct: 125 AQGFSAEEFVNTADEEEISDVIYKYGNESLSRRIAKNIIKYRKIARIDSTRKLAEIVRYS 184 Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258 + F K +I AT++FQA+RI++NNE+ EL + L + + LK G L+VVSFHSLEDR+V Sbjct: 185 IGFRK-GKIDSATKTFQAIRIYINNELGELERFLANVKNILKKNGRLVVVSFHSLEDRIV 243 Query: 259 KKFFASRSGKVMA----VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 K FF S K +A + I + + + + IT KV+ P+ +++ N R+RSAKLRA Sbjct: 244 KNFFKENSAKPVARSKYAKDEIKIDQNKWL-EIITHKVLTPSSQEIRLNVRARSAKLRAA 302 Query: 315 MRTV 318 + + Sbjct: 303 KKIL 306 >gi|312622933|ref|YP_004024546.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor kronotskyensis 2002] gi|312203400|gb|ADQ46727.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor kronotskyensis 2002] Length = 307 Score = 226 bits (576), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 128/307 (41%), Positives = 190/307 (61%), Gaps = 10/307 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 +H+PVLLE+ ++ L P + +DATFG GG+S+ + SN +IA+DRD A+ G+ Sbjct: 3 EHIPVLLEESVSFLITNPDGIYVDATFGLGGHSKRILEKISNKGFLIAIDRDLEAIELGK 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + YK + ++FS++ + + G+ DG++FD GVSS+Q+D +RGFS+ K Sbjct: 63 RKLEAYK-NVKIVHSSFSKVDEVLECLGIEKIDGILFDFGVSSLQLDKQERGFSYNKEAF 121 Query: 133 LDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + S ++A DVVN + +DL RI+ GEE+ A RIA AIV+RR P +TT DL Sbjct: 122 LDMRMDTTSKLTAYDVVNYYSQEDLERIIREYGEERFARRIAKAIVERRSKKPIETTTDL 181 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 S LI V K+ HPA R+FQA+RI VN E+EE+ L + + LK+GG + +SFH Sbjct: 182 SRLISSVVPKPKDGS-HPAQRTFQAIRIEVNRELEEIKIALEKSLRFLKSGGRICAISFH 240 Query: 252 SLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK+FF S + + + + + ITKK + P++E++ N+RS SAK Sbjct: 241 SLEDRIVKEFFKFHSLECICPKDIPVCRCGKKKELNIITKKPITPSKEEIESNKRSHSAK 300 Query: 311 LRAGMRT 317 LR + Sbjct: 301 LRVAEKV 307 >gi|312876343|ref|ZP_07736328.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor lactoaceticus 6A] gi|311796837|gb|EFR13181.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor lactoaceticus 6A] Length = 307 Score = 226 bits (576), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 126/307 (41%), Positives = 194/307 (63%), Gaps = 10/307 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 +H+PVLLE+ ++ L P + +DATFG GG+S+ + SN ++A+D+D A+ G+ Sbjct: 3 EHIPVLLEESVSFLITNPDGIYVDATFGLGGHSKRILEKLSNKGFLVAIDKDLEAIELGK 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + YK + ++FS++ + + G+ DG++FD GVSS+Q+D +RGFS+ K Sbjct: 63 RRLEGYK-NIKIVHSSFSKVDEVLESLGIEKIDGILFDFGVSSLQLDKQERGFSYSKEAF 121 Query: 133 LDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + S ++A DV+N + +DL RI+ GEE+ A RIA AIV+RR++ P +TT +L Sbjct: 122 LDMRMDTTSKLTAYDVINFYSQEDLERIIREYGEERFARRIAKAIVERRRNKPIETTTEL 181 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 SSLI V K+ HPA R+FQA+RI VN E+EE+ L + + LK+GG + +SFH Sbjct: 182 SSLISSVVPKPKDGS-HPAQRTFQAIRIEVNRELEEIKIALEKSLRFLKSGGRICAISFH 240 Query: 252 SLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK FF S + + + + + + ITKK +VP++E++ N+RS SAK Sbjct: 241 SLEDRIVKGFFKFHSLECICPKDIPVCRCGKKKELEIITKKPIVPSKEEIERNKRSHSAK 300 Query: 311 LRAGMRT 317 LR + Sbjct: 301 LRVAQKV 307 >gi|148284404|ref|YP_001248494.1| S-adenosyl-methyltransferase MraW [Orientia tsutsugamushi str. Boryong] gi|262824724|sp|A5CD85|RSMH_ORITB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|146739843|emb|CAM79768.1| S-adenosyl-methyltransferase [Orientia tsutsugamushi str. Boryong] Length = 312 Score = 226 bits (576), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 123/310 (39%), Positives = 183/310 (59%), Gaps = 12/310 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76 H PV+ ++++ L P + LD TFG GGYS+ S C +IA DRDP +S + Sbjct: 5 HTPVMATEMLSYLAPVDNETYLDCTFGTGGYSKLILSNC--NCKIIAFDRDPAVISIASQ 62 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + Y +F+ F F + Y+ ++G+V DLGVSSMQ+D +RGFSF+ LDM Sbjct: 63 FYQQYSNRFTFFNDNFVEANKYLSKSAKLNGIVMDLGVSSMQLDAANRGFSFRYDAELDM 122 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RMS G AS++VN+A+ L I+ GEE +A++IA IV R+ P TT L+++I Sbjct: 123 RMSQKGYKASELVNEASEHQLADIIYKFGEENKANKIAKHIVLAREKKPITTTLQLANII 182 Query: 196 QKTVYFS---KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++ V ++ K N+I AT++FQA+RIF+N+E+ + L + + L G LIVVSFH+ Sbjct: 183 REAVGYNNYYKKNKIDSATKTFQAIRIFINDELSAIQNFLNQSLELLAVNGRLIVVSFHA 242 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHP---AVFQSITKKVVVPTQEDVAFNRRSRSA 309 LED +VKKF + K +A + P V +TKK+ VPT+ ++ N RSRSA Sbjct: 243 LEDAIVKKFMHQNAVKKVAQSKYSTNKQLPLQNGVLHLLTKKIAVPTRTEIINNPRSRSA 302 Query: 310 KLRAGMRTVE 319 +LRA ++ E Sbjct: 303 RLRAALKINE 312 >gi|165377209|ref|NP_001107000.1| probable methyltransferase-like protein 15 isoform 1 [Homo sapiens] gi|160012249|sp|A6NJ78|MET15_HUMAN RecName: Full=Probable methyltransferase-like protein 15; AltName: Full=Methyltransferase 5 domain-containing protein 1 gi|119588672|gb|EAW68266.1| methyltransferase 5 domain containing 1, isoform CRA_a [Homo sapiens] Length = 407 Score = 226 bits (576), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 133/335 (39%), Positives = 193/335 (57%), Gaps = 38/335 (11%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCGQET 77 H+PV++++V+ L+P G++ LD TFG+GG++++ + S+++ ALDRDP A + + Sbjct: 72 HIPVMVDEVVHCLSPQKGQIFLDMTFGSGGHTKAILQKESDIVLYALDRDPTAYALAEHL 131 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 Y +Q FSQ + + GV DGV+ DLG SSMQ+D +RGFS +K GP Sbjct: 132 SELYPKQIRAMLGQFSQAEALLMKAGVQPGTFDGVLMDLGCSSMQLDTPERGFSLRKDGP 191 Query: 133 LDMRMSCSGI----SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM +A+DVVN + + L IL GEEK A +IA AIV+ R P T Sbjct: 192 LDMRMDGGRYPDMPTAADVVNALDQQALASILRTYGEEKHAKKIASAIVQARSIYPITRT 251 Query: 189 QDLSSLIQ-----KTVYFSKN---NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 Q L+S++ +Y K+ H AT++FQALRIFVNNE+ EL GL++A+K L+ Sbjct: 252 QQLASIVAGAFPPSAIYTRKDLLQRSTHIATKTFQALRIFVNNELNELYTGLKTAQKFLR 311 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKV---MAVRHMIPSNAH---------------- 281 GG L+ +SFHSLEDR+VK+F S ++VR + + Sbjct: 312 PGGRLVALSFHSLEDRIVKRFLLGISMTERFNLSVRQQVMKTSQLGSDHENTEEVSMRRA 371 Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 P +++ I KKV+ P +DV N R RSAKLRA ++ Sbjct: 372 PLMWELIHKKVLSPQDQDVQDNPRGRSAKLRAAIK 406 >gi|326919741|ref|XP_003206136.1| PREDICTED: probable S-adenosyl-L-methionine-dependent methyltransferase METT5D1-like [Meleagris gallopavo] Length = 410 Score = 225 bits (574), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 137/335 (40%), Positives = 186/335 (55%), Gaps = 38/335 (11%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCGQET 77 H+PV++E+VI L+P G+ LD TFGAGG+S + + SN+ ALDRDP A Q+ Sbjct: 75 HIPVMVEEVINCLSPQSGQRFLDMTFGAGGHSTALLEKASNITIYALDRDPTAYKIAQQL 134 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 Y +Q FSQ + + GV DGV+ D G SSMQ D +RGFS QK GP Sbjct: 135 SESYPKQIQALLGQFSQSEALLISSGVEPGTLDGVLLDAGCSSMQFDTPERGFSLQKDGP 194 Query: 133 LDMRMSCSGI----SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM +A+DVVN + + L IL GEEK A +IA AIV+ R P T Sbjct: 195 LDMRMDSDRYPDMPTAADVVNALDQQALASILRTYGEEKHAKKIASAIVQARSIYPITRT 254 Query: 189 QDLSSLIQ-----KTVYFSKN---NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 Q L+S++ +Y K+ H AT++FQ LRIFVN+E+ EL GL++AEK LK Sbjct: 255 QQLASIVAGAFPASALYARKDLLQRPTHVATKTFQGLRIFVNDELHELLIGLKTAEKFLK 314 Query: 241 AGGLLIVVSFHSLEDRLVKKF-----------FASRSGKVMAVRHM--------IPSNAH 281 GG L+ +SFHSLEDR++K+F SR A+++ P Sbjct: 315 PGGRLVALSFHSLEDRIIKRFLHGIDMTEKYNLGSRQKIRRALKNCSKEENTQEFPHGKS 374 Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 + + I KKV+ P +D+ N R+RSAKLRA ++ Sbjct: 375 NSKWTFIQKKVLTPQAKDILTNPRARSAKLRAAVK 409 >gi|189184784|ref|YP_001938569.1| S-adenosyl-methyltransferase MraW [Orientia tsutsugamushi str. Ikeda] gi|262824728|sp|B3CVD8|RSMH_ORITI RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|189181555|dbj|BAG41335.1| S-adenosyl-methyltransferase MraW [Orientia tsutsugamushi str. Ikeda] Length = 312 Score = 225 bits (573), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 127/311 (40%), Positives = 185/311 (59%), Gaps = 14/311 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76 H PVL ++++ L P + LD TFGAGGYS+ S C VIA DRDP +S + Sbjct: 5 HTPVLATEMLSYLAPVDNETYLDCTFGAGGYSKLILSNC--NCKVIAFDRDPAVISIASQ 62 Query: 77 TMRDYKEQFSLFQATFSQLQDYVP--DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + Y +F+ F F + Y+ DK ++G+V DLGVSSMQ+D +RGFSF+ LD Sbjct: 63 FYQQYPNRFTFFNENFVEANKYLSKLDK-LNGIVMDLGVSSMQLDEANRGFSFRYDAELD 121 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRMS G AS+ VN+A+ L I+ GEE +A++IA IV R+ P TT L+++ Sbjct: 122 MRMSQKGYKASEFVNEASEHQLADIIYKFGEENKANKIAKHIVLARKKKPITTTLQLANI 181 Query: 195 IQKTVYFS---KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 I++ V ++ K N+I AT++FQA+RIF+N+E+ + L + + L G LIVVSFH Sbjct: 182 IREAVGYNNYYKKNKIDSATKTFQAIRIFINDELSAIQNFLNQSLELLAVNGRLIVVSFH 241 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHP---AVFQSITKKVVVPTQEDVAFNRRSRS 308 +LED ++KKF + K +A + P V +TKK+ VPT+ ++ N RSRS Sbjct: 242 ALEDAIIKKFMHQNAVKKVAQSKYSTNRQSPLQNGVLYLLTKKIAVPTRTEIINNPRSRS 301 Query: 309 AKLRAGMRTVE 319 A+LRA ++ E Sbjct: 302 ARLRAALKINE 312 >gi|311248051|ref|XP_003122950.1| PREDICTED: probable S-adenosyl-L-methionine-dependent methyltransferase METT5D1-like [Sus scrofa] Length = 405 Score = 225 bits (573), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 131/335 (39%), Positives = 190/335 (56%), Gaps = 38/335 (11%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCGQET 77 H+PV++++V+ L P G+ LD TFG+GG++++ + S++I ALDRDP A + ++ Sbjct: 70 HIPVMVDEVVHCLAPQKGQFFLDMTFGSGGHTKAILQKESDIILYALDRDPTAYAIAEQL 129 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 Y +Q FSQ + + GV DGV+ DLG SSMQ+D +RGFS +K GP Sbjct: 130 SEVYPKQIRALLGQFSQAEALLMKAGVQPGTLDGVLLDLGCSSMQLDSPERGFSLRKDGP 189 Query: 133 LDMRMSCSGI----SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM +A+DVVN + L IL GEEK A +IA AIV+ R P T Sbjct: 190 LDMRMDGGRYPDMPTAADVVNALDQHALASILRAYGEEKHAKKIASAIVQARSIYPITRT 249 Query: 189 QDLSSLIQ-----KTVYFSKN---NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 Q L+S++ +Y K+ H AT++FQA RIFVNNE+ EL GL++A+K L+ Sbjct: 250 QQLASIVAGAFPPSAIYARKDLLQRSTHIATKTFQAFRIFVNNELNELYTGLKTAQKFLR 309 Query: 241 AGGLLIVVSFHSLEDRLVKKFF-------------------ASRSGKVMAVRHMIPSNAH 281 GG L+ +SFHSLEDR++K+F S+ G + + I + Sbjct: 310 PGGRLVALSFHSLEDRIIKRFLLGISMTERFNLSARQKVIQKSQLGSSLENKEGISTGKA 369 Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 P +++ + KKV+ P +DV N R RSAKLRA ++ Sbjct: 370 PLMWKLLHKKVLTPEDQDVQDNPRGRSAKLRAAIK 404 >gi|256390851|ref|YP_003112415.1| S-adenosyl-methyltransferase MraW [Catenulispora acidiphila DSM 44928] gi|256357077|gb|ACU70574.1| S-adenosyl-methyltransferase MraW [Catenulispora acidiphila DSM 44928] Length = 316 Score = 225 bits (573), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 132/315 (41%), Positives = 185/315 (58%), Gaps = 12/315 (3%) Query: 16 TIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFA 70 T H+PV+LE+ + +L PA PG V+LDAT G GG+S +F + +V I LDRDP A Sbjct: 2 TSATHIPVMLERCVEILGPALERPGAVVLDATLGLGGHSEAFLRRFPDVRLIGLDRDPQA 61 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSF 127 + + + E+ +L A + ++ D + GV G +FDLGVSS+Q+D +RGF++ Sbjct: 62 LEASGRRLAPFGERATLVHAVYDEIPDVLERLGVAELSGTLFDLGVSSLQLDMRERGFAY 121 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 PLDMRM S GI+A+D+VN D+ RIL GEE+ A RIA IV R+ PF Sbjct: 122 SYDAPLDMRMDSSRGITAADIVNTYPAADIARILRDYGEERFARRIADRIVAEREKEPFT 181 Query: 187 TTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT LS L++ ++ ++ HPA R+FQALRI VN+E+ L + L +A A GG + Sbjct: 182 TTARLSDLVRDSIPAATRRTGGHPAKRAFQALRIAVNDELPVLERALPAAVAATGLGGRI 241 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 V+S+HSLEDRLVK+ FA S ++P P F+ +T+ PT + A N Sbjct: 242 AVLSYHSLEDRLVKRVFAKASESAAPPGLPVVPEQYQPK-FRLLTRGAEPPTDAETAENP 300 Query: 305 RSRSAKLRAGMRTVE 319 R+ SAKLRA R E Sbjct: 301 RAASAKLRAAERVRE 315 >gi|332836127|ref|XP_003313021.1| PREDICTED: methyltransferase like 15 isoform 1 [Pan troglodytes] Length = 407 Score = 225 bits (573), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 133/335 (39%), Positives = 192/335 (57%), Gaps = 38/335 (11%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCGQET 77 H+PV++++V+ L+P G++ LD TFG+GG++++ + S+++ ALDRDP A + + Sbjct: 72 HIPVMVDEVVHCLSPQKGQIFLDMTFGSGGHTKAILQKESDIVLYALDRDPTAYALAEHL 131 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 Y +Q FSQ + + GV DGV+ DLG SSMQ+D +RGFS +K GP Sbjct: 132 SELYPKQIRAMLGQFSQAEALLMKAGVQPGTFDGVLMDLGCSSMQLDTPERGFSLRKDGP 191 Query: 133 LDMRMSCSGI----SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM +A+DVVN + + L IL GEEK A +IA AIV+ R P T Sbjct: 192 LDMRMDGGRYPDMPTAADVVNALDQQALASILRTYGEEKHAKKIASAIVQARSIYPITRT 251 Query: 189 QDLSSLIQ-----KTVYFSKN---NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 Q L+ ++ VY K+ H AT++FQALRIFVNNE+ EL GL++A+K L+ Sbjct: 252 QQLAGIVAGAFPPSAVYTRKDLLQRSTHIATKTFQALRIFVNNELNELYTGLKTAQKFLR 311 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKV---MAVRHMIPSNAH---------------- 281 GG L+ +SFHSLEDR+VK+F S ++VR + + Sbjct: 312 PGGRLVALSFHSLEDRIVKRFLLGISMTERFNLSVRQQVMKTSQLGSDHENTEEVSMRRA 371 Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 P +++ I KKV+ P +DV N R RSAKLRA ++ Sbjct: 372 PLMWELIHKKVLSPQDQDVQDNPRGRSAKLRAAIK 406 >gi|90423689|ref|YP_532059.1| methyltransferase [Rhodopseudomonas palustris BisB18] gi|123275305|sp|Q216E6|RSMH_RHOPB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|90105703|gb|ABD87740.1| methyltransferase [Rhodopseudomonas palustris BisB18] Length = 330 Score = 225 bits (573), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 143/326 (43%), Positives = 197/326 (60%), Gaps = 8/326 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQETM 78 H+PVL ++ + LL P G V +DATFGAGGYS + VI +DRD A++ G + + Sbjct: 7 HIPVLGQEAVGLLAPRDGGVYVDATFGAGGYSGLILAAADTRVIGIDRDRTAIAGGFDLV 66 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + +L + FS L + +G GVV D+GVSSMQ+D +RGFSF+ +GPLDM Sbjct: 67 ERSGGRLTLVEDRFSNLAEVCAAQGAGLVDGVVMDVGVSSMQLDQSERGFSFRLAGPLDM 126 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RM SG SA+DV+ A+ +L I+ I GEE+ + +A AIV R P TT+ L+ ++ Sbjct: 127 RMGQSGPSAADVIAVASEAELANIIYIFGEERHSRAVARAIVAARAIEPITTTRALADIV 186 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 K V+ +K IHPATR+FQ LRIFVN E++EL L +AE+ LK GG L+VVSFHSLED Sbjct: 187 GKVVH-AKPGEIHPATRTFQGLRIFVNGELDELHLALSAAERVLKPGGRLVVVSFHSLED 245 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 R+VK FF +R RH+ + F +TK+ + +++A N R+RSAKLRAG Sbjct: 246 RIVKNFFNARGKTGGGSRHLPELDQEAPSFAILTKRPITAGPDELAGNPRARSAKLRAGE 305 Query: 316 RTVERSIEDDSFVHLPRLPTLSQFRG 341 RT + + LP PTL G Sbjct: 306 RTAALAHPGED---LPAWPTLDAVMG 328 >gi|197101179|ref|NP_001126687.1| probable methyltransferase-like protein 15 [Pongo abelii] gi|75054772|sp|Q5R5T5|MET15_PONAB RecName: Full=Probable methyltransferase-like protein 15; AltName: Full=Methyltransferase 5 domain-containing protein 1 gi|55732357|emb|CAH92881.1| hypothetical protein [Pongo abelii] Length = 407 Score = 224 bits (572), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 131/335 (39%), Positives = 194/335 (57%), Gaps = 38/335 (11%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCGQET 77 H+PV++++V+ L+P G++ LD TFG+GG++++ + S+++ ALDRDP A + + Sbjct: 72 HIPVMVDEVLHCLSPQKGQIFLDMTFGSGGHTKAILQKESDIVLYALDRDPTAYALAEHL 131 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 Y +Q FSQ + + GV DGV+ DLG SSMQ+D +RGFS +K GP Sbjct: 132 SELYPKQIRAMLGQFSQAETLLMKAGVQPGTFDGVLMDLGCSSMQLDTPERGFSLRKDGP 191 Query: 133 LDMRMSCSGI----SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM +A+DVVN + + L IL GEEK A +IA AIV+ R P T Sbjct: 192 LDMRMDGGRYPDMPTAADVVNAFDQQALASILRTYGEEKHAKKIASAIVQARSIYPITRT 251 Query: 189 QDLSSLIQ-----KTVYFSKN---NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 Q L+S++ +Y K+ H AT++FQA+RIFVNNE+ EL GL++A+K L+ Sbjct: 252 QQLASIVAGAFPPSAIYARKDLLQRSTHIATKTFQAVRIFVNNELNELYMGLKTAQKFLR 311 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKV---MAVRHMIPSNAH---------------- 281 GG L+ +SFHSLEDR++K+F S ++VR + + Sbjct: 312 PGGRLVALSFHSLEDRIIKRFLLGISMTERFNLSVRQQVMKTSQLGSDHENTEEVSKRRA 371 Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 P +++ I KKV+ P +DV N R+RSAKLRA ++ Sbjct: 372 PLMWELIHKKVLSPQDQDVQDNPRARSAKLRAAIK 406 >gi|297268188|ref|XP_001088477.2| PREDICTED: putative S-adenosyl-L-methionine-dependent methyltransferase METT5D1-like isoform 1 [Macaca mulatta] Length = 407 Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 132/335 (39%), Positives = 192/335 (57%), Gaps = 38/335 (11%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCGQET 77 H+PV++++V+ L+P G++ LD TFG+GG++++ + S+++ ALDRDP A + + Sbjct: 72 HIPVMVDEVVHCLSPQKGQIFLDMTFGSGGHTKAILQKESDIVLYALDRDPTAYALAEHL 131 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 Y +Q FSQ + + GV DGV+ DLG SSMQ+D +RGFS +K GP Sbjct: 132 SELYPKQIRAVLGQFSQAEALLTKAGVQPGTFDGVLMDLGCSSMQLDTPERGFSLRKDGP 191 Query: 133 LDMRMSCSGI----SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM +A+DVVN + L IL GEEK A +IA AIV+ R P T Sbjct: 192 LDMRMDGGRYPDMPTAADVVNALDQPALASILRTYGEEKHARKIASAIVQARSIYPITRT 251 Query: 189 QDLSSLIQ-----KTVYFSKN---NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 Q L+S++ +Y K+ H AT++FQALRIFVNNE+ EL GL++A+K L+ Sbjct: 252 QQLASIVAGAFPPSAIYARKDLLQRSTHIATKTFQALRIFVNNELNELYTGLKTAQKFLR 311 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKV---MAVRHMIPSNAH---------------- 281 GG L+ +SFHSLEDR++K+F S ++VR + + Sbjct: 312 PGGRLVALSFHSLEDRIIKRFLLGISMTERFNLSVRQQVMKTSQLGSGHENTEEVSMRRA 371 Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 P +++ I KKV+ P +DV N R RSAKLRA ++ Sbjct: 372 PLMWELIHKKVLSPQDQDVQDNPRGRSAKLRAAVK 406 >gi|149409519|ref|XP_001510902.1| PREDICTED: similar to androgen receptor associated coregulator 267-b [Ornithorhynchus anatinus] Length = 436 Score = 224 bits (570), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 138/336 (41%), Positives = 189/336 (56%), Gaps = 40/336 (11%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVSCGQET 77 HVPV++ +V+ L P G+ ILD TFG+GG++R+ + G + ALDRDP A Q+ Sbjct: 101 HVPVMVNEVVNCLAPQQGQSILDMTFGSGGHARAILHKEPGITLYALDRDPSAYKIAQQL 160 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + Y Q FSQ + + GV DGV+ DLG SSMQ+D +RGFS +K GP Sbjct: 161 SQTYPNQVRALLGQFSQAETLLLSAGVQPESLDGVLLDLGCSSMQLDTPERGFSLRKDGP 220 Query: 133 LDMRMSCSGI----SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM +A DVVN + + LT IL GEE+ A +IA AIV+ R P T Sbjct: 221 LDMRMDSGRYPDLPTAGDVVNALDQQALTSILRTYGEERHAKKIASAIVQARTIYPITRT 280 Query: 189 QDLSSLI-----QKTVYFSKN---NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 Q L+S++ +Y K+ H AT++FQA+RIFVN+E+ EL GL++A+K L+ Sbjct: 281 QQLASIVAGAFPDSALYARKDLLQRSTHIATKTFQAIRIFVNDELNELYAGLKTAQKFLR 340 Query: 241 AGGLLIVVSFHSLEDRLVKKFF----------ASRSGKVMAVR----------HMIPSNA 280 GG L+ +SFHSLEDR+VK+F SR K+ V+ + Sbjct: 341 PGGRLVALSFHSLEDRVVKRFLFKIDITEKFNLSRRKKITQVQRGNVDRENEEESSSDMS 400 Query: 281 HPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 HP +Q I KKV+ P +DV N R RSAKLRA ++ Sbjct: 401 HPE-WQMIHKKVLTPDTQDVQENPRGRSAKLRAAIK 435 >gi|126332528|ref|XP_001380257.1| PREDICTED: similar to methyltransferase 5 domain containing 1, [Monodelphis domestica] Length = 442 Score = 224 bits (570), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 137/341 (40%), Positives = 195/341 (57%), Gaps = 38/341 (11%) Query: 14 HHTIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFA 70 H T+ H+PV++ +VI L P G+ ILD TFG+GG+SR+ + + + LDRDP A Sbjct: 101 HETMKKLHIPVMVNEVINCLAPRQGQNILDMTFGSGGHSRAILQKELDVTLYVLDRDPTA 160 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGF 125 + Q+ Y +Q + FSQ + + GV DGV+ DLG SSMQ+D +RGF Sbjct: 161 YAIAQQLSELYPKQIRALLSQFSQAEAMLMKAGVQPGTVDGVLLDLGCSSMQLDTPERGF 220 Query: 126 SFQKSGPLDMRMSCSGI----SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 SF+K GPLDMRM +A+DVVN + + L IL GEEK A +IA AIV+ R Sbjct: 221 SFRKDGPLDMRMDGGRYPDMHTAADVVNALDQQALALILRTYGEEKYAKKIASAIVQARS 280 Query: 182 SAPFQTTQDLSSLI-----QKTVYFSKN---NRIHPATRSFQALRIFVNNEIEELAQGLR 233 P TQ L+S++ +Y K+ H AT++FQALRIFVNNE+ EL GL+ Sbjct: 281 IYPITRTQQLASIVAGAFPTAALYERKDLLQRSTHIATKTFQALRIFVNNELNELYVGLK 340 Query: 234 SAEKALKAGGLLIVVSFHSLEDRLVKKFF----------ASRSGKVMAVRHMIPS----- 278 +A+K L+ GG L+ +SFHSLEDR+VK+F + K++ + + + Sbjct: 341 TAQKFLRPGGRLVALSFHSLEDRIVKRFLHGIDVTEKLSPKKRQKIIQAQSLCLNQENEE 400 Query: 279 ---NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 ++ P ++ I KKVV P ++V N R RSAKLRA ++ Sbjct: 401 FFRSSSPLEWEMIYKKVVTPESQEVQDNPRGRSAKLRAAIK 441 >gi|269926721|ref|YP_003323344.1| S-adenosyl-methyltransferase MraW [Thermobaculum terrenum ATCC BAA-798] gi|269790381|gb|ACZ42522.1| S-adenosyl-methyltransferase MraW [Thermobaculum terrenum ATCC BAA-798] Length = 304 Score = 224 bits (570), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 127/306 (41%), Positives = 188/306 (61%), Gaps = 17/306 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H VLL++ IALL+ P +DAT GAGG++ + S V+ LD DP A+ Q+ Sbjct: 2 HTSVLLDESIALLDIHPNGKYIDATLGAGGHAEKMLERSSPSGRVLGLDADPRAIELAQQ 61 Query: 77 TMRDYKEQFSLFQATFSQLQ------DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + ++ L F ++ D+ P DGV+FDLG+SSMQ+D GFSF++ Sbjct: 62 RLGRFVGRYVLVHTNFRYIEQAATEHDFNP---CDGVLFDLGISSMQVDAWAAGFSFRRD 118 Query: 131 GPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMR SG +A+D++ +++ ++L RI+ GEE ++ +IA AI R+ P TT Sbjct: 119 EPLDMRFDPTSGKTAADIIRESSEQELARIIWEYGEEPKSRQIARAIKSSRE--PIITTV 176 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L ++ +VY K +RIHPATR+FQALRI VN+E++ L +GL A + L+ GG L+V+S Sbjct: 177 QLVQAVE-SVYKGKRSRIHPATRTFQALRIAVNDELDALQEGLAGALRVLRVGGRLVVIS 235 Query: 250 FHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK F RS G + ++ + H + +T+K +VP++E+V N RSRS Sbjct: 236 FHSLEDRIVKHFMRERSKGCICPPEQLVCTCNHRPEIKVLTRKPIVPSEEEVKVNPRSRS 295 Query: 309 AKLRAG 314 AKLRA Sbjct: 296 AKLRAA 301 >gi|15806866|ref|NP_295589.1| S-adenosyl-methyltransferase MraW [Deinococcus radiodurans R1] gi|20139273|sp|Q9RT99|RSMH_DEIRA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|6459646|gb|AAF11419.1|AE002026_7 conserved hypothetical protein [Deinococcus radiodurans R1] Length = 312 Score = 223 bits (569), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 122/300 (40%), Positives = 172/300 (57%), Gaps = 24/300 (8%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 HVPVL +++ L PAPGKV +D T G G++R G+ V +D+DP+A+ ++ Sbjct: 27 HVPVLATEIVEALAPAPGKVFVDGTLGGAGHTRLLLGRGATVYGIDQDPYALDRARQAA- 85 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + Q + + + +P GV DG++ D+GVSS Q+D RGFS+ PLDMR Sbjct: 86 --LPGLHVLQGNYRDMAELLPAAGVTQVDGILLDIGVSSFQLDDAGRGFSYHTEAPLDMR 143 Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 MS SG SA+DVVN + +L ++ GEE+ + RIA IV+ R+ AP +TT L+ +I Sbjct: 144 MSQSGESAADVVNDLDETELAALIYEYGEERHSRRIARFIVQAREKAPIETTVQLAEII- 202 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 K Y + IHPA R+FQALRI+VN+E+ L GL +AE L GG L V+SFHSLEDR Sbjct: 203 KRAYPGFSKGIHPARRTFQALRIYVNDELGALRDGLSAAEGLLAPGGRLAVISFHSLEDR 262 Query: 257 LVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 +VK+F V +TK+ +V + + N R+RSAKLR G R Sbjct: 263 IVKRFLLGSD-----------------VLTPLTKRPIVAAESEQVDNPRARSAKLRVGER 305 >gi|301770125|ref|XP_002920478.1| PREDICTED: probable S-adenosyl-L-methionine-dependent methyltransferase METT5D1-like [Ailuropoda melanoleuca] gi|281337489|gb|EFB13073.1| hypothetical protein PANDA_009216 [Ailuropoda melanoleuca] Length = 407 Score = 223 bits (569), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 132/335 (39%), Positives = 193/335 (57%), Gaps = 38/335 (11%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCGQET 77 H+PV++++V+ L P G++ LD TFG+GG++R+ + S++ ALDRDP A + ++ Sbjct: 72 HIPVMVDEVVRCLAPQKGQIFLDMTFGSGGHTRAILQKESDITLYALDRDPTAYAIAEQL 131 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 Y +Q FSQ + + GV DGV+ DLG SSMQ+D +RGFS +K GP Sbjct: 132 SELYPKQIRAMLGQFSQAEALLMKAGVQPGTLDGVLLDLGCSSMQLDAPERGFSLRKDGP 191 Query: 133 LDMRMSCSGI----SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM +A+DVVN + + L IL GEEK A +IA AIV+ R P T Sbjct: 192 LDMRMDGGRYPDMPTAADVVNALDQQALASILRTYGEEKHAKKIASAIVQARSLYPISRT 251 Query: 189 QDLSSLIQ----KTVYFSKNNRI----HPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 Q L+S++ + F++ + + H AT++FQA RIFVNNE+ EL GL++A+K L+ Sbjct: 252 QQLASIVAGAFPPSAVFARKDLLQRSTHIATKTFQAFRIFVNNELNELYTGLKTAQKFLR 311 Query: 241 AGGLLIVVSFHSLEDRLVKKFF----------ASRSGKVMAVRHMIPSNAH--------- 281 GG L+ +SFHSLEDR+VK+F S KV+ + + + Sbjct: 312 PGGRLVALSFHSLEDRIVKRFLLGISMTERFNLSARQKVIQASQLGSGHENKEGGSIGRA 371 Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 P +++ I KKV+ P DV N R+RSAKLRA ++ Sbjct: 372 PLMWELIHKKVLTPEDRDVQDNPRARSAKLRAAIK 406 >gi|219849709|ref|YP_002464142.1| S-adenosyl-methyltransferase MraW [Chloroflexus aggregans DSM 9485] gi|263445784|sp|B8G5X3|RSMH_CHLAD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|219543968|gb|ACL25706.1| S-adenosyl-methyltransferase MraW [Chloroflexus aggregans DSM 9485] Length = 301 Score = 223 bits (568), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 130/308 (42%), Positives = 186/308 (60%), Gaps = 22/308 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQE 76 HVPV++ +V+A L P PG +DAT G GG++ + + G ++ +D DP A+ + Sbjct: 7 HVPVMVAEVVAALAPRPGGRYIDATVGGGGHALAVLQAARPGGRLLGIDADPAALVATAD 66 Query: 77 TMRD--YKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + +E L +F+ L + G VDG++FDLGVSS Q+D +RGFSF G Sbjct: 67 RLAEAGLREHAVLCHGSFADLAVIAGETGFINVDGILFDLGVSSYQLDTPERGFSFAADG 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMR+ + G +A+D+VN + ++L ++ GEE A RIA AIV+RR++ PFQ T D Sbjct: 127 PLDMRLDPTQGPTAADLVNTLSERELADVIFQYGEEHAARRIARAIVERRRTQPFQRTAD 186 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+++I + V + RIHPATR+FQALRI VN E++ LA L A L GG L+V+SF Sbjct: 187 LAAVIARVVG-GRRGRIHPATRTFQALRIAVNRELDRLAAALPQAVHLLAPGGRLVVISF 245 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDR+VK+F + + A P + + TKK V T ++VA N R+RSAK Sbjct: 246 HSLEDRIVKQFMRAEA-----------EGATPRLVIN-TKKPVAATDDEVATNPRARSAK 293 Query: 311 LRAGMRTV 318 LR R V Sbjct: 294 LRVATRIV 301 >gi|58698054|ref|ZP_00372978.1| S-adenosyl-methyltransferase MraW [Wolbachia endosymbiont of Drosophila ananassae] gi|225629940|ref|YP_002726731.1| S-adenosyl-methyltransferase [Wolbachia sp. wRi] gi|254813210|sp|C0R598|RSMH_WOLWR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|58535411|gb|EAL59486.1| S-adenosyl-methyltransferase MraW [Wolbachia endosymbiont of Drosophila ananassae] gi|225591921|gb|ACN94940.1| S-adenosyl-methyltransferase [Wolbachia sp. wRi] Length = 293 Score = 223 bits (568), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 125/302 (41%), Positives = 189/302 (62%), Gaps = 18/302 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78 H PVLL+++++LL+P G + +DATFGAGGYS++ + V A+DRD + Sbjct: 3 HTPVLLKEMLSLLSPQDGGIYVDATFGAGGYSKAILESADCKVYAIDRDETVTKFYDDLS 62 Query: 79 RDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 Y ++ LF FS +++ + +G+DG+VFD+GVSSMQ+D GDRGFSF GPLDM Sbjct: 63 VRYPDRIKLFIEKFSNIKNLLDSNNIEGIDGIVFDIGVSSMQLDNGDRGFSFLHDGPLDM 122 Query: 136 RM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 M + S I+AS VN +++ + G E+ + +IA AIV R+ +TT +L+ + Sbjct: 123 SMDNSSYINASTFVNALREEEIANTIYNYGGERHSRKIARAIVNARKKKTIKTTFELADI 182 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 + ++V F ++I PATR+FQA+RI+VN+E+ EL +G+++A + L G LIVV+FHSLE Sbjct: 183 V-RSVVFRGKSKIDPATRTFQAIRIWVNDELGELEKGIKAASEILSENGKLIVVTFHSLE 241 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 DR+VK FF + + ++ F + KKV+ + E+V+ N RSRSAKLRA Sbjct: 242 DRIVKTFF----------KDLCATDCK--TFSLLNKKVIEASIEEVSANPRSRSAKLRAI 289 Query: 315 MR 316 R Sbjct: 290 QR 291 >gi|296217807|ref|XP_002755199.1| PREDICTED: putative S-adenosyl-L-methionine-dependent methyltransferase METT5D1 [Callithrix jacchus] Length = 406 Score = 223 bits (567), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 133/334 (39%), Positives = 191/334 (57%), Gaps = 37/334 (11%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCGQET 77 H+PV++++V+ L+P G++ LD TFG+GG++++ + S+++ ALDRDP A + + Sbjct: 72 HIPVMVDEVVHCLSPQKGQIFLDMTFGSGGHTKAILQKESDIVLYALDRDPTAYALAEHL 131 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 Y +Q FSQ + + V DGV+ DLG SSMQ+D +RGFS +K GP Sbjct: 132 SELYPKQIRAMLGRFSQAETLLMKAEVQPGTFDGVLMDLGCSSMQLDTSERGFSLRKDGP 191 Query: 133 LDMRMSCSGI----SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM +A+DVVN + + L IL GEEK A +IA AIV+ R P T Sbjct: 192 LDMRMDGDRYPDMPTAADVVNALDQQALASILRAYGEEKHAKKIASAIVQARSIYPITRT 251 Query: 189 QDLSSLIQ-----KTVYFSKN---NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 Q L+S+I +Y K+ H AT++FQALRIFVNNE+ EL GL++A+K L+ Sbjct: 252 QQLASIIAGAFPPSAIYARKDLLQRSTHIATKTFQALRIFVNNELNELHTGLKTAQKFLR 311 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKV---MAVRHMIPSNAH---------------P 282 GG L+ +SFHSLEDR+VK+F S ++VR + + P Sbjct: 312 PGGRLVALSFHSLEDRIVKRFLLGISMTERFNLSVRQQVMKASRLDSDHENVEVSMRRAP 371 Query: 283 AVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 +++ I KKV+ P DV N R RSAKLRA ++ Sbjct: 372 LMWELIHKKVLSPQSRDVQDNPRGRSAKLRAAIK 405 >gi|296532828|ref|ZP_06895500.1| S-adenosyl-methyltransferase MraW [Roseomonas cervicalis ATCC 49957] gi|296266841|gb|EFH12794.1| S-adenosyl-methyltransferase MraW [Roseomonas cervicalis ATCC 49957] Length = 311 Score = 223 bits (567), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 124/301 (41%), Positives = 180/301 (59%), Gaps = 9/301 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSNVIALDRDPFAVSCGQETM 78 H+PV+L +V+ L P G +D TFG GGY+R+ + + A DRDP A++ GQ + Sbjct: 4 HLPVMLAEVLDNLAPRAGGAYVDGTFGGGGYARAILGRAACTLHAFDRDPDAIARGQALL 63 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + + +L + F ++++ + ++GV DGVV DLGVSS Q+D +RGFSF+ GPLDM Sbjct: 64 AESAGRLTLIERRFGEMREALAERGVTTVDGVVLDLGVSSFQLDQAERGFSFRFDGPLDM 123 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RM +G SA+D+VN +L IL LGEE+ + RIA +V R+ AP +TT L SLI Sbjct: 124 RMEKAGPSAADLVNTLPEAELADILWQLGEERHSRRIARTLVAARREAPIETTGRLRSLI 183 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + + I ATRSFQALR+ VN+E+ E+ +GL +A L GG L+VV+FHSLED Sbjct: 184 HAVMPRDPSG-IDSATRSFQALRLKVNDELGEVERGLEAAASLLAPGGRLVVVAFHSLED 242 Query: 256 RLVKKFFASRSGKVMAVRHMIPS----NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 R+VK+F +G+ PS F+ + + P ++A N R+RSA+L Sbjct: 243 RIVKRFMQQAAGRGPGASRHDPSALLGGGQKPRFRLVANNALRPGAAELAANPRARSARL 302 Query: 312 R 312 R Sbjct: 303 R 303 >gi|294142812|ref|YP_003558790.1| S-adenosyl-methyltransferase MraW [Shewanella violacea DSS12] gi|20139165|sp|Q9F1N8|RSMH_SHEVD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|11761327|dbj|BAB19194.1| MraW [Shewanella violacea] gi|293329281|dbj|BAJ04012.1| S-adenosyl-methyltransferase MraW [Shewanella violacea DSS12] Length = 313 Score = 222 bits (566), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 128/308 (41%), Positives = 181/308 (58%), Gaps = 15/308 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76 H+ VLL + +A LN P + +D TFG GG+SR K +G N +IA+DRDP A+ ++ Sbjct: 7 HLSVLLTETVAGLNIKPDGIYIDGTFGRGGHSREVLKHLGDNGRLIAIDRDPQAIIAAEQ 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 D + FS+ F QL DYV D G VDGV+ D GVSS Q+D +RGFSF + GP Sbjct: 67 FADDAR--FSIVHGGFGQLADYVEDLGLKGKVDGVLLDFGVSSPQLDDAERGFSFLRDGP 124 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G +A++ + + ++D+ + GEEK + IA I R PF T++L Sbjct: 125 LDMRMDNSQGQTAAEWIARTEIEDMAWVFKTYGEEKNSRHIARCIAADRDKTPFLRTKEL 184 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI + + N+ HPATR FQA+RI++N+E+E++ Q L A K L G L V+SFH Sbjct: 185 ADLIARICKSKERNK-HPATRVFQAIRIYINSELEQIDQALEGALKVLAPQGRLSVISFH 243 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP---SNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SLEDR+VK+F R + M+V H +P + + K P+ E+V N+RSRS Sbjct: 244 SLEDRIVKRFI-RRHSQGMSVPHGLPITEAEINKTRLLKAVGKATKPSTEEVEMNKRSRS 302 Query: 309 AKLRAGMR 316 + LR R Sbjct: 303 SVLRVAER 310 >gi|170057826|ref|XP_001864654.1| s-adenosyl-methyl transferase mraw [Culex quinquefasciatus] gi|167877164|gb|EDS40547.1| s-adenosyl-methyl transferase mraw [Culex quinquefasciatus] Length = 1479 Score = 222 bits (566), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 136/327 (41%), Positives = 184/327 (56%), Gaps = 30/327 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 HVPV+ + I L P ++ +D TFGAGG+++ K N +I LDRDP A QE Sbjct: 1151 HVPVMAAEAIKFLKPQDSELFIDMTFGAGGHTKQILKAAPNAKIITLDRDPVAHELAQEM 1210 Query: 78 MRDYKEQFSLFQATFSQL-----QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + Y Q FS+L + V + +DG++FD G SSMQ D G+RGFS K+GP Sbjct: 1211 AKRYPGQIYPVLGRFSELPAKLKELNVNQRSIDGMIFDFGCSSMQFDEGERGFSISKNGP 1270 Query: 133 LDMRMS---C-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQT 187 LDMRM C SA+DV+ + + DL RIL + GEEK A RIA AIV+ R S +T Sbjct: 1271 LDMRMDKDRCPDAPSAADVLARIDEMDLARILKVYGEEKFAKRIARAIVEARHSIKKIET 1330 Query: 188 TQDLSSLIQKTVY----FSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 T++L+ L+Q K R HPAT++FQALRIFVNNE+ E+ G+ A+ LK G Sbjct: 1331 TKELAELVQTCCASEFRLDKLQRPSHPATKTFQALRIFVNNELNEINYGMILAQHYLKIG 1390 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-------------FQSIT 289 G +I ++FHSLED +VK+ MA + + +H + +T Sbjct: 1391 GKMITITFHSLEDTIVKRHVMGNVANDMANKLPLKYCSHTICHDQTVMDAALKPNWHQMT 1450 Query: 290 KKVVVPTQEDVAFNRRSRSAKLRAGMR 316 K VVVP+ +V N RSRSAKLRA +R Sbjct: 1451 KHVVVPSDAEVEENPRSRSAKLRAVVR 1477 >gi|294056587|ref|YP_003550245.1| S-adenosyl-methyltransferase MraW [Coraliomargarita akajimensis DSM 45221] gi|293615920|gb|ADE56075.1| S-adenosyl-methyltransferase MraW [Coraliomargarita akajimensis DSM 45221] Length = 318 Score = 222 bits (566), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 120/301 (39%), Positives = 183/301 (60%), Gaps = 6/301 (1%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF--CKMGSNVIALDRDPFAVSCGQ 75 G HVPVLL + + LL+P G +LD TFG GG++R+ G V+ALDRDP AV Sbjct: 15 GGHVPVLLRETLELLSPRAGAKLLDGTFGGGGHTRALLGAAEGVTVVALDRDPEAVERAA 74 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 E ++ ++F L F L D + + G DG++FD G+SS Q+D +RGFSF++ P+DM Sbjct: 75 EVEAEFGQRFRLVSMNFGDLCD-LEESGFDGILFDFGLSSFQLDTAERGFSFREDAPVDM 133 Query: 136 RMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM+ +GISA++ + A+ + L R + GEEK+ ++ +I+ R + Q T LS L Sbjct: 134 RMNPNAGISAAEFLETADEEALVRAVRNYGEEKRWRKVVQSILSARGTGRLQRTSSLSEL 193 Query: 195 IQKTVYFSKNNR--IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 I V R IHPATRSFQ +R+ VN+E+ + +GL +A + L++GG L +SFHS Sbjct: 194 IADAVGPGPRGRKTIHPATRSFQGIRVEVNDELNAIERGLPAAFERLQSGGTLAAISFHS 253 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK+F +G+ + + + I+ + +VP ++++A N RSRSA++R Sbjct: 254 LEDRIVKRFCRRMAGRPEHAGDSRTQDERQVLGKMISTRPIVPAEDEIAINPRSRSARMR 313 Query: 313 A 313 A Sbjct: 314 A 314 >gi|15606908|ref|NP_214289.1| hypothetical protein aq_1875 [Aquifex aeolicus VF5] gi|8134826|sp|O67721|RSMH_AQUAE RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|2984161|gb|AAC07695.1| hypothetical protein aq_1875 [Aquifex aeolicus VF5] Length = 294 Score = 222 bits (566), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 123/304 (40%), Positives = 180/304 (59%), Gaps = 22/304 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 H PVLL + + L GK+ +D T G GG+++ K ++ I +DRD A+ +E Sbjct: 5 HKPVLLRESVEFLTENGGKIYVDCTLGGGGHAKEILKKRKDIFLIGIDRDEEAIEIAKEN 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 +++++ +FS+++A F L + ++G VDG +FDLGVS Q+ G+RGF+FQ+ PLD Sbjct: 65 LKEFEGRFSIYKANFKDLDLVLKEEGIDKVDGFLFDLGVSMYQLK-GERGFTFQEDQPLD 123 Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM ++A VVN ++L RIL GEEK A RIA AIV+RR+ P +TT +L Sbjct: 124 MRMDKEQTLTACKVVNNYPERELIRILKEYGEEKFAVRIAKAIVQRRKKKPIETTGELVD 183 Query: 194 LIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I V + K+ +IHPATR+FQA+RI VN E+E L + L + G L+V++FHS Sbjct: 184 VILSVVPEYYKHGKIHPATRTFQAIRIEVNKELESLKEALEKTPYHFNSKGRLVVITFHS 243 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK H I +F+ ITKK V P++E++ N SRSAKLR Sbjct: 244 LEDRIVK--------------HFIKEKEKEGIFRIITKKPVTPSEEEIRENPASRSAKLR 289 Query: 313 AGMR 316 + Sbjct: 290 VAEK 293 >gi|163794519|ref|ZP_02188490.1| S-adenosyl-methyltransferase mraW [alpha proteobacterium BAL199] gi|159180243|gb|EDP64766.1| S-adenosyl-methyltransferase mraW [alpha proteobacterium BAL199] Length = 326 Score = 222 bits (565), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 124/287 (43%), Positives = 171/287 (59%), Gaps = 10/287 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78 H+PV+LE V+ L P G +D TFG GGY+R+ + V A+DRDP A+ Sbjct: 8 HIPVMLEPVVEALAPRDGGRYVDGTFGVGGYTRALLTAANCTVYAIDRDPEAIRRAGILA 67 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 +++ + + F + V + G VDG+ DLGVSS QID +RGFSF+ GPLDM Sbjct: 68 QEFGGRLIAIEGRFGAMDQLVANAGAAQVDGIALDLGVSSPQIDDAERGFSFRFDGPLDM 127 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RM +G SA+DVVN A +L I+ LGEE+ A R+A A+V R + P T +L++++ Sbjct: 128 RMEKAGPSAADVVNGATEAELADIVFYLGEERYARRVARALVAARLNGPITRTGELAAIV 187 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 ++ V SK+ I ATR+FQALRI VN E++EL GL +AE+ L GG L VVSFHSLED Sbjct: 188 RRVVPSSKSGGIDSATRTFQALRIHVNRELDELDHGLEAAERLLSPGGRLAVVSFHSLED 247 Query: 256 RLVKKFFASRSGKVMA-VRHMIPSNAHPA-----VFQSITKKVVVPT 296 R VK F RSG+ RH + + A P F+ IT + + P+ Sbjct: 248 RRVKTFLRRRSGRTSGPSRHAMAAIAGPVDGPRPTFEVITGRPIAPS 294 >gi|269838022|ref|YP_003320250.1| S-adenosyl-methyltransferase MraW [Sphaerobacter thermophilus DSM 20745] gi|269787285|gb|ACZ39428.1| S-adenosyl-methyltransferase MraW [Sphaerobacter thermophilus DSM 20745] Length = 326 Score = 222 bits (565), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 130/305 (42%), Positives = 183/305 (60%), Gaps = 8/305 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H PV+L + + LL PG +DATFG GG++R+ + S V+ALD DP AV+ + Sbjct: 20 HQPVMLAESLNLLQVRPGGRYIDATFGGGGHTRAILEASSPDGRVLALDADPAAVARAEA 79 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + ++ F+Q+ G VDGV+ DLG SS QID RGFSFQ+ GPL Sbjct: 80 LAEEVGPRLTVRHGNFAQIARLARAAGFDAVDGVLMDLGFSSFQIDEPSRGFSFQRPGPL 139 Query: 134 DMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMR +G SA ++VN + DL+RI+ GEE +A RIA AIV R+ P +TT L+ Sbjct: 140 DMRFDPTTGSSAREIVNTWDEADLSRIIFEYGEEPKARRIARAIVAARRERPIETTDHLA 199 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +++++ V + IHPATR+FQALRI VN E+E L QGL A L GG L+V++FHS Sbjct: 200 AIVEQAVGGRRGRAIHPATRTFQALRIAVNRELEVLEQGLAGALDVLAPGGRLVVIAFHS 259 Query: 253 LEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK++F + + + + H A + +T K + PT+ + A N RSRSA+L Sbjct: 260 LEDRIVKQYFRTEARDCICPPETPVCVCGHRARLRVVTPKPLRPTEAEQALNPRSRSARL 319 Query: 312 RAGMR 316 RA R Sbjct: 320 RAAER 324 >gi|119331204|ref|NP_001073250.1| probable methyltransferase-like protein 15 [Bos taurus] gi|160012244|sp|A0JN95|MET15_BOVIN RecName: Full=Probable methyltransferase-like protein 15; AltName: Full=Methyltransferase 5 domain-containing protein 1 gi|117306276|gb|AAI26576.1| Methyltransferase 5 domain containing 1 [Bos taurus] gi|296479746|gb|DAA21861.1| putative S-adenosyl-L-methionine-dependent methyltransferase METT5D1 [Bos taurus] Length = 407 Score = 222 bits (565), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 132/335 (39%), Positives = 190/335 (56%), Gaps = 38/335 (11%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCGQET 77 H+PV++++V+ L P G+V LD TFG+GG++R+ + ++ ALDRDP A + ++ Sbjct: 72 HIPVMVDEVVRCLAPQKGQVFLDMTFGSGGHTRAILQKEPDITLYALDRDPTAYAIAEQL 131 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 Y +Q FSQ + + GV DGV+ DLG SSMQ+D +RGFS +K GP Sbjct: 132 SELYPKQIRAILGQFSQAEALLMKAGVQPGTLDGVLLDLGCSSMQLDTPERGFSLRKDGP 191 Query: 133 LDMRMSCSGI----SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM +A+DVVN + + L IL GEEK A +IA AI++ R P T Sbjct: 192 LDMRMDGDRYPDMPTAADVVNALDQQALASILRAYGEEKHAKKIASAIIQARGLYPITRT 251 Query: 189 QDLSSLIQ-----KTVYFSKN---NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 Q L+S++ +Y K+ H AT++FQA RIFVNNE+ EL GL++A+K L+ Sbjct: 252 QQLASIVAGAFPPSALYARKDLLQRPTHIATKTFQAFRIFVNNELNELYTGLKTAQKFLR 311 Query: 241 AGGLLIVVSFHSLEDRLVKKFF----------ASRSGKVMAVRHM---------IPSNAH 281 GG L+ +SFHSLEDR++K+F S KV+ + + + Sbjct: 312 PGGHLVALSFHSLEDRIIKRFLLGISMTERFNLSARQKVIQKSQLDSDQENKEGVSTGKA 371 Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 P +++ I KKV+ P EDV N R RSAKLRA ++ Sbjct: 372 PLMWKLIHKKVLTPEDEDVQDNPRGRSAKLRAAIK 406 >gi|163782688|ref|ZP_02177685.1| hypothetical protein HG1285_17430 [Hydrogenivirga sp. 128-5-R1-1] gi|159882261|gb|EDP75768.1| hypothetical protein HG1285_17430 [Hydrogenivirga sp. 128-5-R1-1] Length = 289 Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 124/305 (40%), Positives = 186/305 (60%), Gaps = 26/305 (8%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H PVLLE+ LL G++ LD T G GG+++ + VI +DRD A+ +E Sbjct: 2 HTPVLLEESTDLLLENSGELYLDCTLGLGGHTKRILEKNPQAFVIGIDRDEEAIEIAKEN 61 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 +++++ + ++++A F+ L + + +GV DG++ DLGVS Q+ +RGFSFQ PLD Sbjct: 62 LKEFEGRIAIYKADFADLDEVLRAEGVERVDGILLDLGVSMFQLKS-ERGFSFQIDAPLD 120 Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM ++A VVN+ + K+L RIL GEE+ + +IA AIV+ R+ P +TT++L+ Sbjct: 121 MRMDKDQKLTAYKVVNEYSEKELARILWEYGEERLSRKIARAIVQHRREKPIETTKELAE 180 Query: 194 LIQKTVYFSK--NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 L+ ++Y ++ + R HPAT++FQA+RI VN E+E L L L G L+V+SFH Sbjct: 181 LVS-SLYPARMRHGRTHPATKTFQAIRIEVNRELESLKTALGKTPDLLNPKGRLVVISFH 239 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+VK FF RS F+ +TKK ++P+QE++A N SRSAKL Sbjct: 240 SLEDRIVKNFFRDRSD----------------AFRILTKKPIIPSQEEIAMNPASRSAKL 283 Query: 312 RAGMR 316 RAG R Sbjct: 284 RAGER 288 >gi|325283143|ref|YP_004255684.1| Ribosomal RNA small subunit methyltransferase H [Deinococcus proteolyticus MRP] gi|324314952|gb|ADY26067.1| Ribosomal RNA small subunit methyltransferase H [Deinococcus proteolyticus MRP] Length = 299 Score = 221 bits (563), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 130/316 (41%), Positives = 183/316 (57%), Gaps = 38/316 (12%) Query: 8 TMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRD 67 T + H H+PVL ++V+ L PAPG++I+D T G G++R + G+ VI +D+D Sbjct: 2 TQEAVPHTPTLSHLPVLPQEVMDALAPAPGRLIVDGTLGGAGHTRMLLERGATVIGIDQD 61 Query: 68 PFAVS-------CGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQ 117 P+A+S G T+R F +Q + GV DG++ D+GVSS Q Sbjct: 62 PYALSRVEAEGLAGLRTVR----------GNFRDMQTLLAGIGVTQVDGILLDIGVSSFQ 111 Query: 118 IDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177 +D +RGFS+ LDMRMS SG SA+D+VN +L ++ GEEK + R+A AIV Sbjct: 112 LDDVERGFSYHSEAALDMRMSQSGPSAADLVNDLEEAELAALIYEYGEEKHSRRLARAIV 171 Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 RQSAP +TT +L+ +I K Y IHPA R+FQALRI VN+E+ L +GL++AE Sbjct: 172 AARQSAPIETTTELADII-KRAYPGFVRGIHPARRTFQALRIAVNDELGALREGLQAAEA 230 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297 L GG L V+SFHSLEDR+VK+F + + P +TK+ V ++ Sbjct: 231 LLAPGGRLGVISFHSLEDRIVKRFL-------LGSERLRP----------LTKRPAVASE 273 Query: 298 EDVAFNRRSRSAKLRA 313 E+ A N RSRSAKLR+ Sbjct: 274 EEQAANPRSRSAKLRS 289 >gi|313680156|ref|YP_004057895.1| S-adenosyl-methyltransferase mraw [Oceanithermus profundus DSM 14977] gi|313152871|gb|ADR36722.1| S-adenosyl-methyltransferase MraW [Oceanithermus profundus DSM 14977] Length = 286 Score = 221 bits (563), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 127/301 (42%), Positives = 177/301 (58%), Gaps = 27/301 (8%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDP----FAVSCGQ 75 H PVLL + + LLN P V +DATFG GG++R + G V+A+D+DP A G Sbjct: 8 HEPVLLHESLDLLNVQPEGVYVDATFGGGGHTRGIVERGGQVVAIDQDPDAHERAERLGG 67 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 +R + F +A L VP V G++ DLGVSS D +RGFS+Q+ GPLDM Sbjct: 68 VAIRFVRSNFRDLEAVLDALG--VPS--VQGILADLGVSSYHFDDPERGFSYQREGPLDM 123 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RM G +A++VVN ++L ++ GEE+Q+ RIA AIV+ R+ AP TT L+ ++ Sbjct: 124 RMGHEGPTAAEVVNTLGEEELAELIWRYGEERQSRRIARAIVEARKEAPIATTTQLAEIV 183 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 ++ V F K HPA ++FQALRI+VN+E+ L L +A + L GG L+V+SFHS+ED Sbjct: 184 RRAVGFRKAG--HPARKTFQALRIYVNDELGALEALLEAAGRVLAPGGRLVVISFHSMED 241 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 R+VK F P F+ +TKK ++P E+ A N R+RSAKLRAG Sbjct: 242 RIVKHFL----------------KGDPR-FRVLTKKPLMPGPEEAARNPRARSAKLRAGE 284 Query: 316 R 316 R Sbjct: 285 R 285 >gi|320161732|ref|YP_004174957.1| S-adenosyl-methyltransferase MraW [Anaerolinea thermophila UNI-1] gi|319995586|dbj|BAJ64357.1| S-adenosyl-methyltransferase MraW [Anaerolinea thermophila UNI-1] Length = 312 Score = 221 bits (563), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 131/302 (43%), Positives = 183/302 (60%), Gaps = 14/302 (4%) Query: 20 HVPVLLEKVIALLNP-APGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H PVL +++I L P +PG+ + DAT GAGG++ + S ++ LD DP A++ Sbjct: 8 HRPVLYQEIILALRPHSPGRYV-DATVGAGGHAAGILEASSPKGELLGLDPDPQALALAS 66 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + + E+ L QA++ L++ + G VDG+VFDLGVSSMQ+D +RGFSF G Sbjct: 67 QRLSIFGERVHLVQASYVTLKEQLAVLGWQEVDGIVFDLGVSSMQLDTPERGFSFSAEGK 126 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMR C +A D+VN ++L RIL GEE+ A RIA AIV Q+ P TT++L Sbjct: 127 LDMRFDPCQDTTAEDLVNHLPEEELARILWEYGEERYARRIARAIV---QARPLHTTREL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + L+ + V K RIHPATR+FQALRI VN E+E + L A + LKAGG L V+SFH Sbjct: 184 AELVARIV-GGKRERIHPATRTFQALRIAVNRELEAIETVLPQAVECLKAGGRLAVISFH 242 Query: 252 SLEDRLVKKFFASRSGKVMA-VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDRLVK FF S + + + H A + +T+ + + E+V N R+RSA+ Sbjct: 243 SLEDRLVKHFFRRESRDCLCPPEQPVCTCGHKASLREVTRHPIEASDEEVRENPRARSAR 302 Query: 311 LR 312 LR Sbjct: 303 LR 304 >gi|270307713|ref|YP_003329771.1| S-adenosyl-methyltransferase [Dehalococcoides sp. VS] gi|270153605|gb|ACZ61443.1| S-adenosyl-methyltransferase [Dehalococcoides sp. VS] Length = 349 Score = 221 bits (562), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 127/312 (40%), Positives = 188/312 (60%), Gaps = 20/312 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H+PV+LE+ I L PG +D T GAGG+S + + G ++++D DP A++ E Sbjct: 6 HIPVMLEESIQGLGVIPGGRYVDCTLGAGGHSEAILEHSYPGGQLLSIDADPKAIALAAE 65 Query: 77 TMRDYKEQFSLFQATFSQLQD------YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 ++ + L F+ L+D Y+P V G++FDLG+SSMQ+D + GFSFQ Sbjct: 66 RLKGFGSSVLLVNDNFANLKDICQRYEYMP---VHGILFDLGLSSMQLDREESGFSFQTE 122 Query: 131 GPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMR S +SA+D+VN + L+ ++ GEE + RIA AI+++R PF+TT Sbjct: 123 APLDMRFSPGQELSAADIVNTYGLAGLSDLIWKYGEEPFSRRIARAILEKR---PFKTTT 179 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 +L+S+I+K V ++ RIHPATR+FQALRI VN E+ L L A+ L GG L+V+S Sbjct: 180 ELASVIEKAV-GGRHGRIHPATRTFQALRIAVNEELSHLESALAQAQSLLGHGGRLVVIS 238 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNA--HPAVFQSITKKVVVPTQEDVAFNRRSR 307 +HSLEDR+VK++F R K IP H + I ++V+ P+ E+++ N RSR Sbjct: 239 YHSLEDRIVKQYF-QREAKGCICPDDIPQCVCDHQPSLRIINRRVITPSDEEISRNPRSR 297 Query: 308 SAKLRAGMRTVE 319 SAK+R R +E Sbjct: 298 SAKMRVAERIIE 309 >gi|222528776|ref|YP_002572658.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor bescii DSM 6725] gi|263446717|sp|B9MQ93|RSMH_ANATD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|222455623|gb|ACM59885.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor bescii DSM 6725] Length = 307 Score = 221 bits (562), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 125/307 (40%), Positives = 191/307 (62%), Gaps = 10/307 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 +H+PVLLE+ ++ L P + +DATFG GG+S+ + SN +IA+DRD A+ G+ Sbjct: 3 EHIPVLLEESVSFLITNPDGIYVDATFGLGGHSKRILEKISNKGFLIAIDRDLEAIELGK 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + YK + ++FS++ + + G+ DG++FD GVSS+Q+D +RGFS+ K Sbjct: 63 RKLEAYK-NVKIVHSSFSKVDELLECLGIEKIDGILFDFGVSSLQLDKQERGFSYNKEAF 121 Query: 133 LDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + S ++A DVVN + +DL +I+ GEE+ A RIA AIV+RR P +TT +L Sbjct: 122 LDMRMDTTSKLTAYDVVNFYSQEDLEKIIREYGEERFARRIAKAIVERRSKKPIETTTEL 181 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 SSLI V K+ HPA R+FQA+RI VN E++E+ L + + L++GG + +SFH Sbjct: 182 SSLISSLVPRPKDGS-HPAQRTFQAIRIEVNGELDEIKIALEKSLRFLRSGGRICAISFH 240 Query: 252 SLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK+FF S + + + + + ITKK + P++E++ N+RS SAK Sbjct: 241 SLEDRIVKEFFKFHSLECVCPKDIPVCRCGKKKELNIITKKPITPSKEEIESNKRSHSAK 300 Query: 311 LRAGMRT 317 LR + Sbjct: 301 LRVAEKV 307 >gi|328881795|emb|CCA55034.1| rRNA small subunit methyltransferase H [Streptomyces venezuelae ATCC 10712] Length = 318 Score = 221 bits (562), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 126/311 (40%), Positives = 192/311 (61%), Gaps = 12/311 (3%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74 HVPV+L++ + +L PA PG V++D T G GG+S + + + ++ALDRD A+ Sbjct: 6 HVPVMLQRCLDMLAPALERPGAVVVDCTLGLGGHSEALLRRFPEARLVALDRDKEALRLS 65 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E + Y E+ +L A + +L + + G VDGV+FDLGVSSMQ+D DRGF++ + Sbjct: 66 GERLAPYGERATLVHAVYDELPEVLDRLGLATVDGVLFDLGVSSMQLDEADRGFAYAQDA 125 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM +GISA++V+N +L RIL GEEKQA RI AIV+ R+ PF + Sbjct: 126 PLDMRMDQTTGISAAEVLNTYAPGELVRILRAYGEEKQAKRIVSAIVREREKEPFSNSAR 185 Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L LI++++ +K +PA R+FQALRI VN E++ + + + +A KA+ GG ++V+S Sbjct: 186 LVELIRESLPQAAKRTGGNPAKRTFQALRIEVNRELDSVEKAIPAAVKAIGVGGRVVVLS 245 Query: 250 FHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 + SLEDR+VK+ FA+ + ++P P + +T+ +PT+E+VA NRR+ Sbjct: 246 YQSLEDRIVKQVFAAGAATTAPPGLPVVPEKYQPR-LKLLTRGAELPTEEEVAENRRAAP 304 Query: 309 AKLRAGMRTVE 319 A+LR R E Sbjct: 305 ARLRGAERIRE 315 >gi|196230915|ref|ZP_03129776.1| S-adenosyl-methyltransferase MraW [Chthoniobacter flavus Ellin428] gi|196225256|gb|EDY19765.1| S-adenosyl-methyltransferase MraW [Chthoniobacter flavus Ellin428] Length = 332 Score = 220 bits (561), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 125/298 (41%), Positives = 176/298 (59%), Gaps = 7/298 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H VLL + + L PAPGKVI+D T G GG++ + G+ VI D+DP A++ + Sbjct: 28 HESVLLAETVERLAPAPGKVIVDGTLGGGGHTAALLAAGAQVIGFDQDPEALAFAGRKLA 87 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 ++ QF +F++ + + GV DG + DLGVSS Q+D +RGFSF GPLDMR Sbjct: 88 EFGGQFRPVHTSFAKAGEALDQLGVEKIDGAMLDLGVSSRQLDAPERGFSFMHDGPLDMR 147 Query: 137 MSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M + ISA+D+VN L +I GEE A +IA +V+ R APF+TT L+ + Sbjct: 148 MDPTNLISAADLVNTMAGDQLEKIFRNYGEEPAARKIAAHLVRDRLVAPFRTTLQLAQAV 207 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 ++ V +++R HPATR FQALRI VN E+E L GL + L GG L +++FHSLED Sbjct: 208 ERVV--PRHSRTHPATRVFQALRIAVNRELEALTLGLEQFSQRLAPGGRLAIITFHSLED 265 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPA-VFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 R+VK FF R+ + + +P +F++IT K VV + + N RSRSAKLR Sbjct: 266 RIVKVFFKERAAAFIDRPEWPEARPNPIHIFKAITGKPVVASDAEQRANPRSRSAKLR 323 >gi|15616841|ref|NP_240054.1| hypothetical protein BU224 [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681595|ref|YP_002467981.1| hypothetical protein BUAP5A_220 [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|257471280|ref|ZP_05635279.1| hypothetical protein BaphL_01110 [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|11387278|sp|P57319|RSMH_BUCAI RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|254813207|sp|B8D922|RSMH_BUCA5 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|25302081|pir||D84956 hypothetical protein [imported] - Buchnera sp. (strain APS) gi|10038905|dbj|BAB12940.1| hypothetical protein [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219624438|gb|ACL30593.1| hypothetical protein BUAP5A_220 [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] Length = 312 Score = 220 bits (560), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 126/307 (41%), Positives = 194/307 (63%), Gaps = 15/307 (4%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSC 73 I H+PV+ +++I L + +D+TFG GG+S K +G N + ++DRDP A S Sbjct: 4 IFKHIPVMKKELIDSLKIKKNGIYIDSTFGTGGHSNEILKKLGQNGRLYSIDRDPIAFSI 63 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQK 129 G E ++D +F + FS+L D+ ++ V+G++FDLGVSS+QID RGFSF+ Sbjct: 64 GSE-IKD--SRFHIINENFSKLLDFAKNEKIIGKVNGIIFDLGVSSIQIDDYRRGFSFKN 120 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM+ + GISAS+ + ++NVK+++ +L GEE+ + +IA+AI +R Q +T Sbjct: 121 DGPLDMRMNPNYGISASEWLFESNVKEISFVLKNFGEERFSRKIAYAIKRRSQIKKITST 180 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+++I+KT+ +KN HPA RSFQA+RI++N E+EE+ + L S K LK GG + ++ Sbjct: 181 LELANIIKKTIP-TKNKFKHPARRSFQAIRIYINQELEEIQKALESTLKILKPGGRISII 239 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV---VVPTQEDVAFNRR 305 SFHSLEDRLVKKF S K + M + + K+ ++PTQ ++ N R Sbjct: 240 SFHSLEDRLVKKFMIKNSTKAIIPYGMPITEEQLNRLTTCKLKIINRILPTQNEINNNPR 299 Query: 306 SRSAKLR 312 +RS+ LR Sbjct: 300 ARSSVLR 306 >gi|332210617|ref|XP_003254406.1| PREDICTED: probable S-adenosyl-L-methionine-dependent methyltransferase METT5D1 [Nomascus leucogenys] Length = 407 Score = 219 bits (559), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 132/335 (39%), Positives = 189/335 (56%), Gaps = 38/335 (11%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H+PV++++V+ L+P G++ LD TFG+GG++++ + ALDRDP A + + Sbjct: 72 HIPVMVDEVVHCLSPRKGQIFLDMTFGSGGHTKAXXXXXXXXXLYALDRDPTAYALAEHL 131 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 Y +Q FSQ + + GV DGV+ DLG SSMQ+D +RGFS +K GP Sbjct: 132 SELYPKQIRAMLGQFSQAEALLMKAGVQPGTFDGVLMDLGCSSMQLDTPERGFSLRKDGP 191 Query: 133 LDMRMSCSGI----SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM +A+DVVN + + L IL GEEK A +IA AIV+ R P T Sbjct: 192 LDMRMDGGRYPDMPTAADVVNALDQQALASILRTYGEEKHAKKIASAIVQARSIYPITRT 251 Query: 189 QDLSSLIQ-----KTVYFSKN---NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 Q L+S++ +Y K+ H AT++FQALRIFVNNE+ EL GL++A+K L+ Sbjct: 252 QQLASIVAGAFPPSAIYARKDLLQRSTHIATKTFQALRIFVNNELNELYMGLKTAQKFLR 311 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKV---MAVRHMIPSNAH---------------- 281 GG L+ +SFHSLEDR+VK+F S ++VR + + Sbjct: 312 PGGRLVALSFHSLEDRIVKRFLLGISMTERFNLSVRQQVMKTSQLGSDYENTEEVSVRRA 371 Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 P +++ I KKV+ P +DV N R RSAKLRA ++ Sbjct: 372 PLMWELIHKKVLSPQDQDVQDNPRGRSAKLRAAIK 406 >gi|157112116|ref|XP_001657398.1| s-adenosyl-methyltransferase mraw [Aedes aegypti] gi|108878145|gb|EAT42370.1| s-adenosyl-methyltransferase mraw [Aedes aegypti] Length = 357 Score = 219 bits (559), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 133/328 (40%), Positives = 184/328 (56%), Gaps = 31/328 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 HVPV+ + I L P ++ LD TFGAGG+++ K+ N +IALDRDP A Sbjct: 28 HVPVMATETIKFLKPQDNELFLDMTFGAGGHTKEILKVAPNAKIIALDRDPTAHDMALAM 87 Query: 78 MRDYKEQFSLFQATFSQLQDY-----VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + Y Q FS+L + V + +DG++FD G SSMQ D G RGFS K+GP Sbjct: 88 AKKYPGQIFPILGRFSELPEQLAKINVNQQSIDGIIFDFGCSSMQFDEGSRGFSISKNGP 147 Query: 133 LDMRMSCSGI----SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQT 187 LDMRM SA++++ + + DL RIL I GEEKQA +IA AIV+ R S +T Sbjct: 148 LDMRMDQDRFPDTPSAAEILAKIDEVDLARILKIYGEEKQAKKIARAIVETRYSIKKIET 207 Query: 188 TQDLSSLIQKTV-----YFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 T++L+ ++Q + K R HPAT++FQALRIFVNNE+ E+ G+ A++ LK Sbjct: 208 TKELADIVQSCLGSGSFRLDKLQRPSHPATKTFQALRIFVNNELNEINYGMILAQRYLKI 267 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMA-------------VRHMIPSNAHPAVFQSI 288 GG +I ++FHSLED +VK+ MA H + N + + Sbjct: 268 GGKMIAITFHSLEDTIVKRHVMGNVLNDMANTLPLKYCSHTISYEHDVMENVMKTSWHQM 327 Query: 289 TKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 TK VV+P ++V N RSRSAKLRA +R Sbjct: 328 TKHVVLPGDDEVEQNPRSRSAKLRAVVR 355 >gi|319790660|ref|YP_004152293.1| S-adenosyl-methyltransferase MraW [Thermovibrio ammonificans HB-1] gi|317115162|gb|ADU97652.1| S-adenosyl-methyltransferase MraW [Thermovibrio ammonificans HB-1] Length = 295 Score = 219 bits (559), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 123/306 (40%), Positives = 184/306 (60%), Gaps = 26/306 (8%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77 H PVLL++ + +L G V +DAT G GG++ + K + VIA+DRD A+ E Sbjct: 6 HPPVLLKESLKVLKAEEGGVFVDATLGGGGHTEAILKAHPENRVIAIDRDEEAIERAMER 65 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++ Y ++ S++ A FSQ+ + +GV+ GV+FDLGVS + G+RGF+ K PLD Sbjct: 66 LKPYGDRVSIYHANFSQIDRVLQMEGVERVKGVLFDLGVSHFHLR-GERGFTVWKEQPLD 124 Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM S ++A +VVN+ + ++L RI+ GEEK A +IA IVKRR+ P +TT +L+S Sbjct: 125 MRMDRSQKLTAKEVVNELSERELARIIFRYGEEKFARKIASEIVKRRKRKPIETTTELAS 184 Query: 194 LIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++++ + + HPA ++FQA+RI+VN E EE+ G+ A + ++ GG L V++FH Sbjct: 185 IVEEVIPKKLWAGRKKHPAVKTFQAIRIYVNREFEEIETGIPKAAEFVEPGGRLAVITFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDRLVK + G F +TKK +VPT+E+V N +RSAKL Sbjct: 245 SLEDRLVKNILRNLEG-----------------FTPVTKKPIVPTEEEVVENPAARSAKL 287 Query: 312 RAGMRT 317 RA R Sbjct: 288 RAAERV 293 >gi|326402227|ref|YP_004282308.1| ribosomal RNA small subunit methyltransferase H [Acidiphilium multivorum AIU301] gi|325049088|dbj|BAJ79426.1| ribosomal RNA small subunit methyltransferase H [Acidiphilium multivorum AIU301] Length = 313 Score = 219 bits (559), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 140/301 (46%), Positives = 186/301 (61%), Gaps = 9/301 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78 HVPVL E+ +A+L P V LD TFG GGYS S + S V A+DRDP A++ G Sbjct: 7 HVPVLREEAVAMLAPRADGVYLDGTFGGGGYSASMLEAASCTVWAIDRDPAAIARGAALA 66 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 Y ++ L + F L + D+GV DG VFD GVSS Q+D RGFSF+ GPLDM Sbjct: 67 ARYPDRLHLIEGRFGDLLALLRDRGVTALDGAVFDFGVSSYQLDDPSRGFSFRTDGPLDM 126 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RM +G +A+D+VN +L IL GEE+ + RIA AIV+RR + PF+TT DL+++I Sbjct: 127 RMGAAGPTAADIVNGYAEAELADILFHFGEERASRRIAAAIVRRRAAQPFETTADLAAVI 186 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 +TV + I PATRSFQALRI VN E+ E+ + L +A L GG L+ VSFHSLED Sbjct: 187 -RTVVRPDRSGIDPATRSFQALRIEVNQELAEIERALEAAASLLAPGGRLVAVSFHSLED 245 Query: 256 RLVKKFFASRSGKVMAVRHMIPSN----AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 R+VK+F + +G V A PS A F+++T+ VV P + + A N R+RSA+L Sbjct: 246 RIVKRFMNAATGHVAAPSRHDPSGLARQAAAPRFRALTRGVVTPGEAETAANPRARSARL 305 Query: 312 R 312 R Sbjct: 306 R 306 >gi|302550804|ref|ZP_07303146.1| MraW methylase [Streptomyces viridochromogenes DSM 40736] gi|302468422|gb|EFL31515.1| MraW methylase [Streptomyces viridochromogenes DSM 40736] Length = 318 Score = 219 bits (557), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 127/311 (40%), Positives = 188/311 (60%), Gaps = 12/311 (3%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74 HVPV+L++ + LL PA PG V++D T G GG+S + + + ++ALDRD A+ Sbjct: 6 HVPVMLQRCLDLLAPALEGPGPVVVDCTLGLGGHSEALLERFPEARLVALDRDKEALRLA 65 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E + Y E+ +L A + +L + + G V GV+FDLGVSSMQ+D DRGF++ + Sbjct: 66 GERLAPYGERATLVHAVYDELPEVLDKLGIRRVQGVLFDLGVSSMQLDEADRGFAYAQDA 125 Query: 132 PLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM +G+SA++V+N +L RIL GEEKQA RI AIV+ R+ PF + Sbjct: 126 PLDMRMDQTTGVSAAEVLNTYPPGELVRILRAYGEEKQAKRIVAAIVREREKEPFSNSAR 185 Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L LI+ + +K +PA R+FQALRI VN E+ L + + +A +AL GG + V+S Sbjct: 186 LVELIRDALPQAAKRTGGNPAKRTFQALRIEVNGELAVLERAVPAAVEALDVGGRIAVLS 245 Query: 250 FHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 +HSLEDRLVK+ FA+ + ++P P + +T+ +PT+E++A NRR+ Sbjct: 246 YHSLEDRLVKQVFAAGAATTAPPGLPVVPERYQPR-LKLLTRGAELPTEEEIAENRRAAP 304 Query: 309 AKLRAGMRTVE 319 A+LR R E Sbjct: 305 ARLRGAQRIRE 315 >gi|302871361|ref|YP_003839997.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor obsidiansis OB47] gi|302574220|gb|ADL42011.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor obsidiansis OB47] Length = 307 Score = 219 bits (557), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 126/307 (41%), Positives = 191/307 (62%), Gaps = 10/307 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 +H+PVLLE+ + L P + +DATFG GG+S+ + SN +IA+DRD A+ G+ Sbjct: 3 EHMPVLLEESVFFLVTNPDGIYVDATFGLGGHSKRILEKLSNKGFLIAIDRDLEAIELGK 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +K + ++FS+L + + G+ DG++FD GVSS+Q+D +RGFS+ + Sbjct: 63 RKLEVHK-NVKIVHSSFSKLDEVLKGLGIEKIDGILFDFGVSSLQLDKQERGFSYNQEAF 121 Query: 133 LDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + S ++A DVVN + KDL RI+ GEE+ A RIA AIV+RR P +TT +L Sbjct: 122 LDMRMDTTSKLTAYDVVNFYSEKDLERIIREYGEERFARRIAKAIVERRSKKPIETTTEL 181 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 S+LI V K+ HPA R+FQA+RI VN+E++E+ L + + L++GG + +SFH Sbjct: 182 SNLISSLVPRPKDGS-HPAQRTFQAIRIEVNSELDEIKIALEKSLRFLRSGGRICAISFH 240 Query: 252 SLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK+FF S + + + + I ITKK + P++E++ N+RS SAK Sbjct: 241 SLEDRIVKEFFKFHSLECVCPKDIPICVCGKKKELNIITKKPITPSKEEIEKNKRSHSAK 300 Query: 311 LRAGMRT 317 LR + Sbjct: 301 LRVAEKV 307 >gi|194213931|ref|XP_001918167.1| PREDICTED: similar to methyltransferase 5 domain containing 1 [Equus caballus] Length = 401 Score = 218 bits (556), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 131/331 (39%), Positives = 186/331 (56%), Gaps = 44/331 (13%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCGQET 77 H+PV++E+V+ L P G++ LD TFG+GG++R+ + S++ ALDRDP A + ++ Sbjct: 72 HIPVMVEEVVRCLAPQKGQIFLDMTFGSGGHTRAILQKESDITLYALDRDPTAYALAEQL 131 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 Y +Q FSQ + + GV DGV+ DLG SSMQ+D +RGFS +K GP Sbjct: 132 SELYPKQIRAMLGQFSQAEALLMKAGVQPETLDGVLLDLGCSSMQLDAPERGFSLRKDGP 191 Query: 133 LDMRMSCSGI----SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM +A+DVVN + + L IL GEEK A +IA AIV+ R P T Sbjct: 192 LDMRMDGGRYPDMPTAADVVNALDQQALASILRTYGEEKHAKKIASAIVQARSIYPITRT 251 Query: 189 QDLSSLIQ-----KTVYFSKN---NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 Q L+S++ +Y K+ H AT++FQA RIFVN+E+ EL GL++A+K L+ Sbjct: 252 QQLASIVAGAFPPSAIYARKDLLQRSTHIATKTFQAFRIFVNDELNELYTGLKTAQKFLR 311 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPS-----------NAH-------- 281 GG L+ +SFHSLEDR+VK+F G MA R + + + H Sbjct: 312 PGGRLVALSFHSLEDRIVKRFLL---GISMAERFNLSARQKVIQSSQLGSGHKNKEGGSM 368 Query: 282 ---PAVFQSITKKVVVPTQEDVAFNRRSRSA 309 P +++ I K+VV P DV +N R RSA Sbjct: 369 GRAPIMWELIHKRVVTPEDHDVEYNLRERSA 399 >gi|146295951|ref|YP_001179722.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor saccharolyticus DSM 8903] gi|263446954|sp|A4XHZ6|RSMH_CALS8 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|145409527|gb|ABP66531.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 307 Score = 218 bits (555), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 123/306 (40%), Positives = 189/306 (61%), Gaps = 10/306 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQ 75 +H+PVLLE+ + L P + +DATFG GG+S+ K+ SN ++A+D+D A+ G+ Sbjct: 3 EHIPVLLEESTSYLVTKPDGIYVDATFGLGGHSKKILEKLSSNGFLVAIDKDEEAIELGK 62 Query: 76 ETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + + + FS+L + ++ +DG++FDLGVSS+Q+D +RGFS+ Sbjct: 63 EKFKKCN-NIKIVHSPFSRLDEVLNFLKIDKIDGILFDLGVSSLQLDKPERGFSYNSDSF 121 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S ++A DVVN+ + K+L RI+ GEE+ A +IA IVKRR+ P TT++L Sbjct: 122 LDMRMDKTSKLTAYDVVNKYSEKELERIIREYGEERYAKKIAKEIVKRREQKPITTTKEL 181 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI V K+ +PA R+FQA+RI VN E+EE+ L + + LK+GG + V+SFH Sbjct: 182 NDLINSVVPRPKDGS-NPAKRTFQAIRIEVNGELEEIKVALEKSIRFLKSGGRICVISFH 240 Query: 252 SLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK+FF S + + + + + +TKK + PT+E++ N+RS SAK Sbjct: 241 SLEDRIVKEFFKYHSLECICPKDIPVCVCGKKKELNILTKKPITPTKEEIERNKRSHSAK 300 Query: 311 LRAGMR 316 LR + Sbjct: 301 LRVAEK 306 >gi|78043538|ref|YP_360897.1| S-adenosyl-methyltransferase MraW [Carboxydothermus hydrogenoformans Z-2901] gi|88909191|sp|Q3AAD7|RSMH_CARHZ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|77995653|gb|ABB14552.1| S-adenosyl-methyltransferase MraW [Carboxydothermus hydrogenoformans Z-2901] Length = 311 Score = 218 bits (555), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 130/302 (43%), Positives = 178/302 (58%), Gaps = 8/302 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78 HVPVLL + I LN G V +DAT G GG+S K V+ LD+D A++ + + Sbjct: 5 HVPVLLNETIEHLNLKAGGVYVDATLGGGGHSEEILKRADCRVVGLDQDEDALNHAAKRL 64 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + ++F ++ F ++ V G VDGV+ DLGVSS Q+D +GFSFQ GPLDM Sbjct: 65 APFGDRFIPVKSNFRNIRKVVYRLGLDAVDGVLMDLGVSSFQLDNPLKGFSFQHDGPLDM 124 Query: 136 RMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM +A+DVVN K+L RI GEE+ A +IA AIVKRR+ PF +T +L+ Sbjct: 125 RMDPQNPKTAADVVNTYPEKELIRIFYEYGEERYAPQIARAIVKRREKKPFTSTLELAEE 184 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 I + V HPA R FQA+RI VN+E+ L +GL A + LK GG ++V++FHSLE Sbjct: 185 IIRAVPAKARREKHPAKRVFQAIRIEVNDELSSLEEGLVGAVEVLKPGGRIVVITFHSLE 244 Query: 255 DRLVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 DRLVK FF + + M P + + ITKK +VP++E++ NRR+ SAKLR Sbjct: 245 DRLVKNFFRREENPCICPKDFPMCVCGKKPRL-KVITKKPLVPSEEEIEKNRRAHSAKLR 303 Query: 313 AG 314 A Sbjct: 304 AA 305 >gi|57234909|ref|YP_181088.1| S-adenosyl-methyltransferase MraW [Dehalococcoides ethenogenes 195] gi|88909197|sp|Q3Z9L1|RSMH_DEHE1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|57225357|gb|AAW40414.1| S-adenosyl-methyltransferase MraW [Dehalococcoides ethenogenes 195] Length = 349 Score = 218 bits (555), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 125/312 (40%), Positives = 189/312 (60%), Gaps = 20/312 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H+PV+LE+ I L PG +D T GAGG+S + + G ++++D DP A++ E Sbjct: 6 HIPVMLEESIQGLGVIPGGRYVDCTLGAGGHSEAILEHSYPGGQLLSIDADPKAIALAAE 65 Query: 77 TMRDYKEQFSLFQATFSQLQD------YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 ++ + L F+ L+D Y+P V G++FDLG+SSMQ+D + GFSFQ Sbjct: 66 RLKCFGSSVLLVNDNFANLKDICQRYEYMP---VHGILFDLGLSSMQLDREESGFSFQTE 122 Query: 131 GPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMR S +SA+D+VN ++ L+ ++ GEE + RIA AI+++R PF+TT Sbjct: 123 APLDMRFSPGQELSAADIVNTYDLAGLSDLIWKYGEEPFSRRIARAILEKR---PFKTTT 179 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 +L+S+I+K V ++ RIHPATR+FQALRI VN E+ L L A+ L GG L+V+S Sbjct: 180 ELASVIEKAV-GGRHGRIHPATRTFQALRIAVNEELSHLESALAQAQSLLGHGGRLVVIS 238 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNA--HPAVFQSITKKVVVPTQEDVAFNRRSR 307 +HSLEDR+VK++F + K IP H + I ++V+ P+ E+++ N RSR Sbjct: 239 YHSLEDRIVKQYF-QKEAKGCICPDDIPQCVCNHKPSLRLINRRVITPSDEEISRNPRSR 297 Query: 308 SAKLRAGMRTVE 319 SAK+R R ++ Sbjct: 298 SAKMRVAERIIQ 309 >gi|75675236|ref|YP_317657.1| methyltransferase [Nitrobacter winogradskyi Nb-255] gi|88909206|sp|Q3STT6|RSMH_NITWN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|74420106|gb|ABA04305.1| methyltransferase [Nitrobacter winogradskyi Nb-255] Length = 332 Score = 218 bits (555), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 141/323 (43%), Positives = 193/323 (59%), Gaps = 7/323 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQETM 78 HVPVL + +A+L P G V +DATFGAGGYSR+ + VI +DRDP A++ G + Sbjct: 8 HVPVLGREAVAMLAPRAGGVYVDATFGAGGYSRAILATAETRVIGIDRDPTAIAGGSGLV 67 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV---SSMQIDCGDRGFSFQKSGPLDM 135 + + L + FS L + V + SSMQ+D RGFSF+ GPLDM Sbjct: 68 EESGGRLILVEDRFSHLAAVCAAQDAAAVDGVVMDVGVSSMQLDEAGRGFSFRLDGPLDM 127 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RMS G +A++VV +A+ DL I+ I GEE+++ +A AIV R+ P TT+ L+ ++ Sbjct: 128 RMSGHGPTAAEVVARASETDLADIIYIFGEERRSRAVARAIVGARRHGPIATTRALADIV 187 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 K V +K + IHPATR+FQALRIFVN E++EL L +AE+ LK GG L VVSFHSLED Sbjct: 188 SKVVR-AKPHEIHPATRTFQALRIFVNEELDELIAALAAAERVLKPGGRLAVVSFHSLED 246 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 R+VK F A R RH P F +TK+ + P ++V N R+RSA+LRA Sbjct: 247 RIVKNFLAWRGKTGGGSRHRPEIERAPPSFAILTKRPLTPGDDEVQANPRARSARLRAAE 306 Query: 316 RTVERSIEDDSFVHLPRLPTLSQ 338 RT +I+D + LP P+L+ Sbjct: 307 RTDAAAIDDGA--ELPAWPSLAN 327 >gi|119469206|ref|ZP_01612190.1| S-adenosyl-methyltransferase MraW [Alteromonadales bacterium TW-7] gi|119447458|gb|EAW28726.1| S-adenosyl-methyltransferase MraW [Alteromonadales bacterium TW-7] Length = 312 Score = 218 bits (554), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 128/310 (41%), Positives = 190/310 (61%), Gaps = 17/310 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYS-RSFCKMGS--NVIALDRDPFAVSCGQ 75 +HV VL+++ I L P + +D TFG GG+S + ++G + A+D+DP A+ + Sbjct: 6 EHVSVLMDETIDALAIKPDGIYMDGTFGRGGHSGQILARLGDAGRLQAIDQDPQAIKSAE 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + D + F++ FS+L D VDG++ D+GVSS Q+D +RGFSF K G Sbjct: 66 KFADDSR--FAIAHTRFSKLYDVAEQNDLIGKVDGILLDIGVSSPQLDDAERGFSFMKDG 123 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM SG SA+ + +A + D+T ++ LGEEK RIAH I++ R+ P TT+ Sbjct: 124 PLDMRMDPTSGRSAAQWLAEAELDDITHVIKKLGEEKFGKRIAHKILETREHTPITTTKQ 183 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ L+ + V K+ HPATR+FQA+RI++N+E+EE+ L+SA K LK GG L+V+SF Sbjct: 184 LADLVDEAVPV-KDKFKHPATRTFQAIRIYINSELEEIQTALQSAVKVLKPGGRLVVISF 242 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV----VPTQEDVAFNRRS 306 HSLEDR+VK+F +S R + ++A + Q++T K V P+ E+VA N RS Sbjct: 243 HSLEDRIVKQFIRKQSKGEALPRGLPLTDAQ--INQNLTLKAVGKAIKPSTEEVARNPRS 300 Query: 307 RSAKLRAGMR 316 RS+ LR R Sbjct: 301 RSSVLRVAQR 310 >gi|290961148|ref|YP_003492330.1| SAM-dependent methyltransferase [Streptomyces scabiei 87.22] gi|260650674|emb|CBG73790.1| putative SAM-dependent methyltransferase [Streptomyces scabiei 87.22] Length = 318 Score = 218 bits (554), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 129/312 (41%), Positives = 187/312 (59%), Gaps = 14/312 (4%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74 HVPV+L++ + +L PA PG V++D T G GG+S + + ++ALDRD A+ Sbjct: 6 HVPVMLQRCLDMLAPALTEPGAVVVDCTLGLGGHSEALLTRFPEARLVALDRDKEALRLS 65 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E + + E+ +L A + +L + + G V GV+FDLGVSSMQ+D DRGF++ + Sbjct: 66 GERLAPFGERATLVHAVYDELPEVLDRLGLPRVQGVLFDLGVSSMQLDEADRGFAYAQDA 125 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM +GI A++V+N +L RIL GEEKQA RI AIV+ R PF + Sbjct: 126 PLDMRMDQTTGIGAAEVLNTYPAGELVRILRAYGEEKQAKRIVSAIVRERDKEPFTNSAR 185 Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L LI+ ++ +K +PA R+FQALRI VN E+ L + + +A KAL GG + V+S Sbjct: 186 LVELIRDSLPQAAKRTGGNPAKRTFQALRIEVNGELTVLERAVPAAVKALAVGGRIAVLS 245 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +HSLEDRLVK+ FA+ V A + +P P + +T+ +PT+E+VA NRR+ Sbjct: 246 YHSLEDRLVKQVFAA-GAAVTAPPGLPVVPERYQPR-LKLLTRGAELPTEEEVAENRRAA 303 Query: 308 SAKLRAGMRTVE 319 A+LR R E Sbjct: 304 PARLRGAERVRE 315 >gi|148259076|ref|YP_001233203.1| S-adenosyl-methyltransferase MraW [Acidiphilium cryptum JF-5] gi|263433381|sp|A5FUK2|RSMH_ACICJ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|146400757|gb|ABQ29284.1| S-adenosyl-methyltransferase MraW [Acidiphilium cryptum JF-5] Length = 313 Score = 218 bits (554), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 139/301 (46%), Positives = 185/301 (61%), Gaps = 9/301 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78 HVPVL E+ +A+L P V LD TFG GGYS S + S V A+DRDP A++ G Sbjct: 7 HVPVLREEAVAMLAPRADGVYLDGTFGGGGYSASMLEAASCTVWAIDRDPAAIARGAALA 66 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 Y ++ L + F L + D+GV DG VFD GVSS Q+D RGFSF+ GPLDM Sbjct: 67 ARYPDRLHLIEGRFGDLLALLRDRGVTALDGAVFDFGVSSYQLDDPSRGFSFRTDGPLDM 126 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RM +G +A+D+VN +L IL GEE+ + RIA AIV+RR + PF+TT DL+++I Sbjct: 127 RMGAAGPTAADIVNGYAEAELADILFHFGEERASRRIAAAIVRRRAAQPFETTADLAAVI 186 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 +TV + I PATRSFQALRI VN E+ E+ + L +A L GG L+ VSFHSLED Sbjct: 187 -RTVVRPDRSGIDPATRSFQALRIEVNQELAEIERALEAAASLLAPGGRLVAVSFHSLED 245 Query: 256 RLVKKFFASRSGKVMAVRHMIPSN----AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 R+VK+F + +G V A PS A F+++T+ VV P + + N R+RSA+L Sbjct: 246 RIVKRFMNAATGHVAAPSRHDPSGLARQAAAPRFRALTRGVVTPGEAETVANPRARSARL 305 Query: 312 R 312 R Sbjct: 306 R 306 >gi|158316863|ref|YP_001509371.1| S-adenosyl-methyltransferase MraW [Frankia sp. EAN1pec] gi|263447093|sp|A8KZA9|RSMH_FRASN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|158112268|gb|ABW14465.1| S-adenosyl-methyltransferase MraW [Frankia sp. EAN1pec] Length = 327 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 130/309 (42%), Positives = 187/309 (60%), Gaps = 12/309 (3%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCG 74 H PVL E+VI LL+PA PG V++DAT G GG+S + + V I LDRD A+ Sbjct: 5 HTPVLTERVIQLLDPALRRPGAVVVDATVGLGGHSHALLEAFPQVRLIGLDRDTTALEHS 64 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + ++ L A + QL D + GV DGV+FDLGVSSMQ+D +RGF++ + Sbjct: 65 RRRLTGLGDRVDLEHAVYDQLPDVLDRLGVPSVDGVLFDLGVSSMQLDLDERGFAYSRDA 124 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM G +A+DV+N +V LTR+L GEE+ A RIA A+V +RQ+APF T+ Sbjct: 125 PLDMRMDQERGPTAADVLNNYDVDALTRVLREYGEERFARRIARAVVTQRQAAPFTTSAR 184 Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L L++ ++ ++ +PA R+FQALRI VN+E+E L + + +A AL G L+V+S Sbjct: 185 LVDLVRDSIPAAARRTGGNPAKRTFQALRIEVNSELEVLERAVPAAFDALAVAGRLVVLS 244 Query: 250 FHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 +HSLEDRLVK+ RS V +IP +A P + +T+ + ++ N R+ S Sbjct: 245 YHSLEDRLVKRVLMPRSVPSVPPDMPVIPDDARP-TLRWLTRGAEPASDTEIEQNARAGS 303 Query: 309 AKLRAGMRT 317 +LRA RT Sbjct: 304 VRLRAAERT 312 >gi|73988949|ref|XP_534100.2| PREDICTED: similar to methyltransferase 5 domain containing 1 [Canis familiaris] Length = 694 Score = 217 bits (553), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 129/335 (38%), Positives = 194/335 (57%), Gaps = 38/335 (11%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCGQET 77 H+PV++++V+ L P G++ LD TFG+GG++R+ + S++ ALDRDP A + ++ Sbjct: 359 HIPVMVDEVVRCLAPQKGQIFLDMTFGSGGHTRAILQKESDITLYALDRDPTAYAIAEQL 418 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 Y +Q FSQ + + GV DGV+ D G SSMQ+D +RGFS +K GP Sbjct: 419 SELYPKQIRALLGQFSQAEALLMKAGVQPGTLDGVLLDPGCSSMQLDAPERGFSLRKDGP 478 Query: 133 LDMRMSCSGI----SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM +A+DVVN + + L IL GEEK A +IA AIV+ R P T Sbjct: 479 LDMRMDGGRYPDMPTAADVVNALDQQALASILRTYGEEKHAKKIASAIVQARSLYPISRT 538 Query: 189 QDLSSLI----QKTVYFSKNNRI----HPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 Q L+S++ + F++ + + H AT++FQA RIFVNNE+ EL GL++A+K L+ Sbjct: 539 QQLASIVAGAFPPSAVFARKDLLQRSTHIATKTFQAFRIFVNNELNELYTGLKTAQKFLR 598 Query: 241 AGGLLIVVSFHSLEDRLVKKF-----------FASRSGKVMAVR--------HMIPSNAH 281 GG L+ +SFHSLEDR+VK+F ++R + A++ + Sbjct: 599 PGGRLVALSFHSLEDRIVKRFLLGISMTERFNLSARQKVIQALKLGSGRENMEGASISKA 658 Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 P +++ I KKV+ P ++V N R+RSAKLRA ++ Sbjct: 659 PLMWELIHKKVLTPDDQEVQENPRARSAKLRAAIK 693 >gi|73748191|ref|YP_307430.1| S-adenosyl-methyltransferase MraW [Dehalococcoides sp. CBDB1] gi|147668966|ref|YP_001213784.1| S-adenosyl-methyltransferase MraW [Dehalococcoides sp. BAV1] gi|289432241|ref|YP_003462114.1| S-adenosyl-methyltransferase MraW [Dehalococcoides sp. GT] gi|88909198|sp|Q3ZZA4|RSMH_DEHSC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446194|sp|A5FSB7|RSMH_DEHSB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|73659907|emb|CAI82514.1| S-adenosyl-methyltransferase MraW [Dehalococcoides sp. CBDB1] gi|146269914|gb|ABQ16906.1| S-adenosyl-methyltransferase MraW [Dehalococcoides sp. BAV1] gi|288945961|gb|ADC73658.1| S-adenosyl-methyltransferase MraW [Dehalococcoides sp. GT] Length = 349 Score = 217 bits (553), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 128/332 (38%), Positives = 194/332 (58%), Gaps = 27/332 (8%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H+PV+LE+ I L PG +D T GAGG+S + + G ++++D DP A++ E Sbjct: 6 HIPVMLEESIQGLGVIPGGRYVDCTLGAGGHSEAILEHSYPGGQLLSIDADPSAITLAAE 65 Query: 77 TMRDYKEQFSLFQATFSQLQD------YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 ++ + L F+ L+D Y+P V G++FDLG+SSMQ+D + GFSFQ Sbjct: 66 RLKSFGSSVLLVNDNFANLKDICQRYEYMP---VHGILFDLGLSSMQLDRQESGFSFQTE 122 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMR S ++A+D++N +V +L+ ++ GEE + RIA AI ++R PF+TT Sbjct: 123 APLDMRFSPEQELTAADIINGYDVTELSDLIWKYGEEPFSRRIARAIAEKR---PFKTTT 179 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 +L++ I++ V ++ RIHPATR+FQALRI VN E+ L L A L GG L+V+S Sbjct: 180 ELAAAIERAV-GGRHGRIHPATRTFQALRIAVNEELSHLESALSQAHSLLGHGGRLVVIS 238 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNA--HPAVFQSITKKVVVPTQEDVAFNRRSR 307 +HSLEDR+VK++F + K IP H + I ++V+ P+ E+++ N RSR Sbjct: 239 YHSLEDRIVKQYF-QKEAKGCICPDDIPQCVCDHQPSLRIINRRVITPSDEEISRNPRSR 297 Query: 308 SAKLRAGMRTVE-------RSIEDDSFVHLPR 332 SAK+R R +E S ED+ H+ R Sbjct: 298 SAKMRVAERIIEPGEGRFFSSREDELVNHVSR 329 >gi|99034246|ref|ZP_01314308.1| hypothetical protein Wendoof_01000895 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 314 Score = 217 bits (553), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 127/323 (39%), Positives = 188/323 (58%), Gaps = 39/323 (12%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78 H PVLL+++++LL+P G + +DATFGAGGYS++ + V A+DRD + Sbjct: 3 HTPVLLKEMLSLLSPQDGGIYVDATFGAGGYSKAILESADCKVYAIDRDETVTKFYDDLS 62 Query: 79 RDYKEQFSLFQATFSQLQDYV------------------------PDKGVDGVVFDLGVS 114 Y ++ LF FS ++ + GVDGVVFD+GVS Sbjct: 63 VRYPDRIKLFIEKFSNIKSILSSVKPSPVIPVLDTGKNNWSRAGMTSNGVDGVVFDIGVS 122 Query: 115 SMQIDCGDRGFSFQKSGPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIA 173 SMQ+D GDRGFSF GPLDM M + S I+AS VN +++ + G E+ + +IA Sbjct: 123 SMQLDNGDRGFSFLHDGPLDMSMDNSSYINASTFVNALREEEIANTIYNYGGERHSRKIA 182 Query: 174 HAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLR 233 AI+ R+ +TT +L+ ++ ++V F ++I PATR+FQA+RI+VN+E+EEL +G++ Sbjct: 183 RAIINARKKKTIKTTFELADIV-RSVVFRGKSKIDPATRTFQAIRIWVNDELEELEKGIK 241 Query: 234 SAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV 293 +A + L G LIVV+FHSLEDR+VK FF + + ++ F + KKV+ Sbjct: 242 AASEILSENGKLIVVTFHSLEDRIVKTFF----------KDLCATDCK--TFSLLNKKVI 289 Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316 + E+V+ N RSRSAKLRA R Sbjct: 290 EASIEEVSANPRSRSAKLRAIQR 312 >gi|242278175|ref|YP_002990304.1| S-adenosyl-methyltransferase MraW [Desulfovibrio salexigens DSM 2638] gi|263446206|sp|C6BYH4|RSMH_DESAD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|242121069|gb|ACS78765.1| S-adenosyl-methyltransferase MraW [Desulfovibrio salexigens DSM 2638] Length = 324 Score = 217 bits (553), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 130/312 (41%), Positives = 181/312 (58%), Gaps = 13/312 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VLL +VI L P PG LD T G G+S + K+ G+ + LDRD A+ E Sbjct: 12 HTSVLLNEVIEWLAPKPGGRYLDGTLGMAGHSSAILKIAGEGAELAGLDRDEQALELAGE 71 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + ++ F FS+ + + + G VDGVV DLGVSS+ +D +RGFSF K GPL Sbjct: 72 RLAPFGDRAHRFHLAFSKFEAALDELGWDTVDGVVLDLGVSSLHLDHAERGFSFIKDGPL 131 Query: 134 DMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 DMRM +G AS +VN+ + DL RIL + GEE AS+I AI+ R+ TT L Sbjct: 132 DMRMDPAGGMPPASSIVNKGSYSDLNRILKLYGEEPLASKITKAIIAAREEEKITTTLQL 191 Query: 192 SSLIQKTVYFSKN---NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +S+++K Y +K +R HPAT++FQ LRI VN+E+EEL L + L G + ++ Sbjct: 192 ASIVEK-AYPAKRRALSRTHPATKTFQGLRIAVNSELEELKTFLDRIPERLSPGARVAII 250 Query: 249 SFHSLEDRLVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 SFHSLEDR+VKK F ++S I + + +T+K V+PT+E++ N RSR Sbjct: 251 SFHSLEDRIVKKTFKAQSQSCDCPPMQPICTCGKVKLMNVLTRKPVLPTEEEMKVNTRSR 310 Query: 308 SAKLRAGMRTVE 319 SAKLR RT E Sbjct: 311 SAKLRVAERTGE 322 >gi|42520071|ref|NP_965986.1| S-adenosyl-methyltransferase MraW [Wolbachia endosymbiont of Drosophila melanogaster] gi|88912336|sp|P62478|RSMH_WOLPM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|42409808|gb|AAS13920.1| S-adenosyl-methyltransferase MraW [Wolbachia endosymbiont of Drosophila melanogaster] Length = 314 Score = 217 bits (553), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 127/323 (39%), Positives = 188/323 (58%), Gaps = 39/323 (12%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78 H PVLL+++++LL+P G + +DATFGAGGYS++ + V A+DRD + Sbjct: 3 HTPVLLKEMLSLLSPQDGGIYVDATFGAGGYSKAILESADCKVYAIDRDETVTKFYDDLS 62 Query: 79 RDYKEQFSLFQATFSQLQDYV------------------------PDKGVDGVVFDLGVS 114 Y ++ LF FS ++ + GVDGVVFD+GVS Sbjct: 63 VRYPDRIKLFIEKFSNIKSILSSVEPSPVIPVLDTGKNNWSRAGMTSNGVDGVVFDIGVS 122 Query: 115 SMQIDCGDRGFSFQKSGPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIA 173 SMQ+D GDRGFSF GPLDM M + S I+AS VN +++ + G E+ + +IA Sbjct: 123 SMQLDNGDRGFSFLHDGPLDMSMDNSSYINASTFVNALREEEIANTIYNYGGERHSRKIA 182 Query: 174 HAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLR 233 AI+ R+ +TT +L+ ++ ++V F ++I PATR+FQA+RI+VN+E+EEL +G++ Sbjct: 183 RAIINARKKKTIKTTFELADIV-RSVVFRGKSKIDPATRTFQAIRIWVNDELEELEKGIK 241 Query: 234 SAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV 293 +A + L G LIVV+FHSLEDR+VK FF + + ++ F + KKV+ Sbjct: 242 AASEILSENGKLIVVTFHSLEDRIVKTFF----------KDLCATDCK--TFSLLNKKVI 289 Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316 + E+V+ N RSRSAKLRA R Sbjct: 290 EASIEEVSANPRSRSAKLRAIQR 312 >gi|297199072|ref|ZP_06916469.1| MraW methylase [Streptomyces sviceus ATCC 29083] gi|197715975|gb|EDY60009.1| MraW methylase [Streptomyces sviceus ATCC 29083] Length = 318 Score = 217 bits (553), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 128/311 (41%), Positives = 187/311 (60%), Gaps = 12/311 (3%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74 HVPV+L++ + LL PA PG V++D T G GG+S + + + +IALDRD A+ Sbjct: 6 HVPVMLQRCLDLLAPALERPGSVVVDCTLGLGGHSEALLQRFPEARLIALDRDKEALRLS 65 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E + + E+ +L A + +L D + G V GV+FDLGVSSMQ+D DRGF++ + Sbjct: 66 GERLAPFGERATLVHAVYDELPDVLDRLGIARVQGVLFDLGVSSMQLDEADRGFAYAQDA 125 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM +G+SA++V+N +L RIL GEEKQA RI AIV+ R PF + Sbjct: 126 PLDMRMDQTTGMSAAEVLNTYPAGELVRILRAYGEEKQAKRIVSAIVRERDKEPFTNSAR 185 Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L LI+ ++ +K +PA R+FQALRI VN E+ L + + +A KAL GG + V+S Sbjct: 186 LVELIRDSLPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVKALAVGGRIAVLS 245 Query: 250 FHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 +HSLEDRLVK+ FA+ + ++P P + +T+ +PT+E++A NRR+ Sbjct: 246 YHSLEDRLVKQVFAAGAATTAPPGLPVVPERYQPR-LKLLTRGAELPTEEEIAENRRAAP 304 Query: 309 AKLRAGMRTVE 319 A+ R R E Sbjct: 305 ARCRGAERIRE 315 >gi|269958801|ref|YP_003328589.1| S-adenosyl-methyltransferase [Anaplasma centrale str. Israel] gi|269848631|gb|ACZ49275.1| S-adenosyl-methyltransferase [Anaplasma centrale str. Israel] Length = 291 Score = 217 bits (552), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 130/303 (42%), Positives = 182/303 (60%), Gaps = 20/303 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQETM 78 H PVLL +V+ L+P GK+ +DATFG GGYSR +M V A+D+D E + Sbjct: 3 HKPVLLNEVMETLSPQDGKIYIDATFGGGGYSRKMLEMARCAVYAIDQDITVKEYFDELL 62 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + + + SL + FS+L++ + G VDG+VFDLG S+MQ+ RGFSF KSG LDM Sbjct: 63 QSFPGRLSLAISKFSRLREVMLSFGINRVDGIVFDLGTSAMQLADPSRGFSFMKSGSLDM 122 Query: 136 RM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM S S +A+ VN K++ I+ G E+++ ++A AIV RQ +T+DL+ + Sbjct: 123 RMCSSSQRNAALFVNTVLEKEMADIIYHYGGERRSRKVARAIVDARQKRKINSTEDLAEI 182 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 I+ V S+ + I PATR+FQA+RI+VNNE+EEL GL +A K L+ GG ++V SFHSLE Sbjct: 183 IRSVVPRSRVHPIDPATRTFQAIRIWVNNELEELQAGLEAASKLLRVGGKILVTSFHSLE 242 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 DR+VK+ F S F + KK + PT E++ N RSRS KLRA Sbjct: 243 DRVVKQKFKSLCD---------------MGFSLVNKKAIRPTDEEIRDNPRSRSGKLRAI 287 Query: 315 MRT 317 +R Sbjct: 288 VRV 290 >gi|291440170|ref|ZP_06579560.1| S-adenosylmethionine-dependent methyltransferase [Streptomyces ghanaensis ATCC 14672] gi|291343065|gb|EFE70021.1| S-adenosylmethionine-dependent methyltransferase [Streptomyces ghanaensis ATCC 14672] Length = 318 Score = 217 bits (552), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 127/311 (40%), Positives = 187/311 (60%), Gaps = 12/311 (3%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74 HVPV+L++ + LL PA PG V++D T G GG+S + + + ++ALDRD A+ Sbjct: 6 HVPVMLQRCLDLLAPALERPGAVVVDCTLGLGGHSEALLRRFPEARLVALDRDKEALRLS 65 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E + + E+ +L A + +L D + GV GV+FDLGVSSMQ+D DRGF++ + Sbjct: 66 GERLAPFGERATLVHAVYDELPDVLARLGVPRVQGVLFDLGVSSMQLDEADRGFAYAQDA 125 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM +G+SA++V+N +L RIL GEEKQA RI AIV+ R+ PF + Sbjct: 126 PLDMRMDQTAGVSAAEVLNTYPPGELVRILRAYGEEKQAKRIVAAIVREREKEPFTRSAR 185 Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L LI+ + +K +PA R+FQALRI VN E+ L + + +A KAL G + V+S Sbjct: 186 LVELIRDALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVKALDVDGRIAVLS 245 Query: 250 FHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 +HSLEDRLVK+ FA+ + ++P P + +T+ +PT+E++A NRR+ Sbjct: 246 YHSLEDRLVKQVFAAGAATTAPPGLPVVPERYQPR-LKLLTRGAELPTEEEIAENRRAAP 304 Query: 309 AKLRAGMRTVE 319 A+LR R E Sbjct: 305 ARLRGAQRIRE 315 >gi|29832656|ref|NP_827290.1| S-adenosylmethionine-dependent methyltransferase [Streptomyces avermitilis MA-4680] gi|42559459|sp|Q82AE4|RSMH_STRAW RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|29609776|dbj|BAC73825.1| putative S-adenosylmethionine-dependent methyltransferase [Streptomyces avermitilis MA-4680] Length = 318 Score = 217 bits (552), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 126/311 (40%), Positives = 188/311 (60%), Gaps = 12/311 (3%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74 HVPV+L++ + +L PA PG V++D T G GG+S + + ++ALDRD A+ Sbjct: 6 HVPVMLQRCLDMLAPALTEPGAVVVDCTLGLGGHSEALLTQFPEARLVALDRDKEALRLS 65 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E + + ++ +L A + +L D + GV GV+FDLGVSSMQ+D DRGF++ + Sbjct: 66 GERLAPFGDRATLVHAVYDELPDVLDRLGVPRVQGVLFDLGVSSMQLDEADRGFAYAQDA 125 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM +GISA++V+N ++ RIL GEEKQA RI AIV+ R+ PF + Sbjct: 126 PLDMRMDQTTGISAAEVLNTYPPGEIVRILRAYGEEKQAKRIVSAIVREREKEPFSNSAR 185 Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L LI+ ++ +K +PA R+FQALRI VN E+ L + + +A KAL GG + V+S Sbjct: 186 LVELIRDSLPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVKALAVGGRIAVLS 245 Query: 250 FHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 +HSLEDRLVK+ FA+ + ++P P + +T+ +PT+E++A NRR+ Sbjct: 246 YHSLEDRLVKQVFAAGAATTAPPGLPVVPERYQPR-LKLLTRGAELPTEEEIAENRRAAP 304 Query: 309 AKLRAGMRTVE 319 A+LR R E Sbjct: 305 ARLRGAQRIRE 315 >gi|291229752|ref|XP_002734836.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii] Length = 377 Score = 216 bits (551), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 128/335 (38%), Positives = 183/335 (54%), Gaps = 30/335 (8%) Query: 12 AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPF 69 +H H+PV+L+ V+ +P +V +D TFGAGG+S K N+ ALDRDP Sbjct: 41 TVHSNEQLHIPVMLDDVLDFFSPEKNQVYIDMTFGAGGHSSEILKCAENITMYALDRDPL 100 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQL-----QDYVPDKGVDGVVFDLGVSSMQIDCGDRG 124 A+ ++ + + + FS++ Q V VDGV+ D G SSMQ+D +RG Sbjct: 101 ALDIAKQLSGLHGNRIIPLEGKFSEITRLLDQHDVGLNSVDGVLLDAGCSSMQMDTAERG 160 Query: 125 FSFQKSGPLDMRMSCS----GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 FS K GPLDMRM +A+DVVN + DL +I+ GEEK A +IA +IV+ R Sbjct: 161 FSISKDGPLDMRMDSDRDPKQPTAADVVNALSEADLAKIIRTYGEEKHARKIARSIVEYR 220 Query: 181 QSA-PFQTTQDLSSLIQKTVYFSKNNR--------IHPATRSFQALRIFVNNEIEELAQG 231 + P TT++ + ++ + + +H AT++FQALRIFVNNE+ EL G Sbjct: 221 TTWQPITTTKEFAYVVSCAFSHREAKKQKDKLRRPVHTATKTFQALRIFVNNELNELVMG 280 Query: 232 LRSAEKALKAGGLLIVVSFHSLEDRLVKKFF----------ASRSGKVMAVRHMIPSNAH 281 L EK LK GG L V++FHSLEDR+VK+F S K+ R + Sbjct: 281 LEQVEKILKPGGKLAVITFHSLEDRIVKRFLRGIDYSEKYSMSIGEKMRENRTRDGDDNR 340 Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 P ++ I KKV+ P +ED+ N R+RSAKLR ++ Sbjct: 341 PQRWKEINKKVLEPLEEDIIDNPRARSAKLRTAVK 375 >gi|297194883|ref|ZP_06912281.1| S-adenosylmethionine-dependent methyltransferase [Streptomyces pristinaespiralis ATCC 25486] gi|297152504|gb|EFH31797.1| S-adenosylmethionine-dependent methyltransferase [Streptomyces pristinaespiralis ATCC 25486] Length = 318 Score = 216 bits (551), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 126/311 (40%), Positives = 186/311 (59%), Gaps = 12/311 (3%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74 HVPV+L++ + +L PA PG V++D T G GG+S + + + ++ALDRD A+ Sbjct: 6 HVPVMLQRCLDMLAPALRTPGGVVVDCTLGLGGHSEALLEQFPQTRLVALDRDTEALRLS 65 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E + + E+ +L A + +L D + G V GV+FDLGVSSMQ+D DRGF++ + Sbjct: 66 GERLARFGERATLVHAVYDELPDVLDRLGIPRVQGVLFDLGVSSMQLDEADRGFAYAQDA 125 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM +G+SA++V+N +L RIL GEEKQA RI AIV+ R+ PF + Sbjct: 126 PLDMRMDQTTGMSAAEVLNTYPPGELVRILRAYGEEKQAKRIVSAIVREREKEPFTNSAR 185 Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L LI+ + +K +PA R+FQALRI VN E+ L + + +A AL GG + V+S Sbjct: 186 LVELIRDALPQAAKRTGGNPAKRTFQALRIEVNGELAVLERAVPAAVSALAVGGRIAVLS 245 Query: 250 FHSLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 +HSLEDRLVK+ FA+ + ++P P + +T+ +PT E++A NRR+ Sbjct: 246 YHSLEDRLVKQVFAAGAANTAPPGLPVVPEQYQPR-LKLLTRGAELPTDEEIAENRRAAP 304 Query: 309 AKLRAGMRTVE 319 A+LR R E Sbjct: 305 ARLRGAERIRE 315 >gi|127514389|ref|YP_001095586.1| S-adenosyl-methyltransferase MraW [Shewanella loihica PV-4] gi|262826527|sp|A3QIM9|RSMH_SHELP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|126639684|gb|ABO25327.1| S-adenosyl-methyltransferase MraW [Shewanella loihica PV-4] Length = 313 Score = 216 bits (549), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 126/308 (40%), Positives = 181/308 (58%), Gaps = 15/308 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76 H+ VLL + +A LN P + +D TFG GG+SR K +G N +IA+DRDP A++ ++ Sbjct: 7 HLSVLLTETVAGLNIKPEGIYIDGTFGRGGHSREVLKQLGPNGRLIAIDRDPQAIAAAEQ 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 D + FS+ F QL YV D G +DG++FD GVSS Q+D +RGFSF + GP Sbjct: 67 FADDAR--FSIVHGGFGQLAQYVDDLGLRGKIDGILFDFGVSSPQLDDAERGFSFLRDGP 124 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G +A++ + +A ++D+ + GEEK A IA I R PF T++L Sbjct: 125 LDMRMDNSQGETAAEWLARAEIEDMAWVFKTYGEEKNARHIARCIAADRDKTPFLRTKEL 184 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI + V SK HPATR FQA+RI++N+E+E++ Q L A L G L V+SFH Sbjct: 185 ADLIAR-VSKSKERNKHPATRVFQAIRIYINSELEQIDQALEGAVTVLAPQGRLSVISFH 243 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP---SNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SLEDR+VK+F R + +V H +P + + K + P+ E++ N R+RS Sbjct: 244 SLEDRMVKRFI-RRHSQGESVPHGLPLTEAEINKTRLLKAVGKAIKPSAEEIDRNARARS 302 Query: 309 AKLRAGMR 316 + LR R Sbjct: 303 SVLRVAER 310 >gi|312134653|ref|YP_004001991.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor owensensis OL] gi|311774704|gb|ADQ04191.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor owensensis OL] Length = 307 Score = 216 bits (549), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 123/307 (40%), Positives = 191/307 (62%), Gaps = 10/307 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 +H+PVLLE+ + L P + +DATFG GG+S+ + S+ +IA+DRD A+ G+ Sbjct: 3 EHIPVLLEESVFFLVTNPDGIYVDATFGLGGHSKRILEKLSDKGFLIAIDRDLEAIELGK 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 ++ +K + ++FS++ + + G+ DG++FD GVSS+Q+D +RGFS+ K Sbjct: 63 RKLKVHK-NVKIVHSSFSKVDEVLKGLGIEKIDGILFDFGVSSLQLDKQERGFSYNKEAF 121 Query: 133 LDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + S ++A DVVN + KDL +I+ GEE+ A RIA AIV+RR P +TT +L Sbjct: 122 LDMRMDTTSKLTAYDVVNFYSQKDLEKIIREYGEERFARRIAKAIVERRSKKPIETTTEL 181 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 S+LI V K+ HPA R+FQA+RI VN E++E+ L + + L++GG + +SFH Sbjct: 182 SNLISSLVPRPKDGS-HPAQRTFQAIRIEVNGELDEIKIALEKSLRFLRSGGRICAISFH 240 Query: 252 SLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK+FF S + + + + + ITKK + P++E++ N+RS SAK Sbjct: 241 SLEDRIVKEFFKFHSLECVCPKDIPVCVCGKKKELNIITKKPITPSKEEIEKNKRSHSAK 300 Query: 311 LRAGMRT 317 LR + Sbjct: 301 LRVAEKV 307 >gi|332704509|ref|ZP_08424597.1| Ribosomal RNA small subunit methyltransferase H [Desulfovibrio africanus str. Walvis Bay] gi|332554658|gb|EGJ51702.1| Ribosomal RNA small subunit methyltransferase H [Desulfovibrio africanus str. Walvis Bay] Length = 328 Score = 216 bits (549), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 128/325 (39%), Positives = 186/325 (57%), Gaps = 15/325 (4%) Query: 9 MSSAIHHTIGDH--VPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIA 63 M H G+H + VLL + + L P PG LD T G GG+S + ++ G+ ++ Sbjct: 2 MRELAHKEQGEHGHISVLLAETLEFLAPRPGGRYLDGTLGLGGHSEAILELAGQGAELLG 61 Query: 64 LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDC 120 LDRD A+ + + + + L QA +S + + + G +DG V DLG+SS+Q+D Sbjct: 62 LDRDAQALERARTRLARFGQAAHLVQAPYSSFEAEMENLGWDLLDGAVLDLGISSLQVDL 121 Query: 121 GDRGFSFQKSGPLDMRMS--CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178 +RGFSF GPLDMRM AS +VN+A+ + L I+ LGEE A RIA AIV+ Sbjct: 122 AERGFSFMAEGPLDMRMDPDSGAAPASQIVNKASCERLKEIIRDLGEEPMAGRIARAIVE 181 Query: 179 RRQSAPFQTTQDLSSLIQKT--VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236 RQ +TT +L++++ + + + R HPATR+FQALR+ VN+E+EEL L Sbjct: 182 ARQDKEIETTLELAAIVARAYPAKWRRTARNHPATRTFQALRMAVNSELEELESFLSRIT 241 Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVV 294 L+ GG ++V+SFHSLEDRLVK F + K R P + + +TKK + Sbjct: 242 DRLRPGGRVVVISFHSLEDRLVKWAFREDARKCRCPRTQPFCDCGGQPRL-KLLTKKPLA 300 Query: 295 PTQEDVAFNRRSRSAKLRAGMRTVE 319 P+++++A N RSRSAKLRA R E Sbjct: 301 PSEQEMAANPRSRSAKLRAAERVGE 325 >gi|302561117|ref|ZP_07313459.1| methylase MraW [Streptomyces griseoflavus Tu4000] gi|302478735|gb|EFL41828.1| methylase MraW [Streptomyces griseoflavus Tu4000] Length = 318 Score = 216 bits (549), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 126/311 (40%), Positives = 187/311 (60%), Gaps = 12/311 (3%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74 HVPV+L++ + LL PA PG V++D T G GG+S + + + ++ALDRD A+ Sbjct: 6 HVPVMLQRCLDLLAPALEGPGAVVVDCTLGLGGHSEALLRRFPEARLVALDRDKEALRLS 65 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E + + E+ +L A + +L D + G+ GV+FDLGVSSMQ+D RGF++ + Sbjct: 66 GERLAPFGERATLVHAVYDELPDVLGRLGIARAQGVLFDLGVSSMQLDEAGRGFAYAQDA 125 Query: 132 PLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM +G+SA++V+N +L RIL GEEKQA RI AIV+ R+ PF + Sbjct: 126 PLDMRMDQTTGVSAAEVLNTYPPGELVRILRAYGEEKQAKRIVSAIVREREKEPFTNSAR 185 Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L LI+ + +K +PA R+FQALRI VN E+ L + + +A KAL GG + V+S Sbjct: 186 LVELIRDALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVKALGVGGRIAVLS 245 Query: 250 FHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 +HSLEDRLVK+ FA+ + ++P P + +T+ +PT+E++A NRR+ Sbjct: 246 YHSLEDRLVKQVFAAGAATTAPPGLPVVPEQYQPR-LKLLTRGAELPTEEEIAENRRAAP 304 Query: 309 AKLRAGMRTVE 319 A+LR R E Sbjct: 305 ARLRGAERIRE 315 >gi|317050381|ref|YP_004111497.1| S-adenosyl-methyltransferase MraW [Desulfurispirillum indicum S5] gi|316945465|gb|ADU64941.1| S-adenosyl-methyltransferase MraW [Desulfurispirillum indicum S5] Length = 316 Score = 216 bits (549), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 126/322 (39%), Positives = 188/322 (58%), Gaps = 21/322 (6%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPG---KVILDATFGAGGYSRSFCKMGSNV--IA 63 MS+ HH +PVL + V++ L PA +++D T G GG+S + +V I Sbjct: 1 MSTTFHH-----IPVLADAVLSSLGPALNAEQPLLVDCTVGGGGHSSLILEHCPSVRIIG 55 Query: 64 LDRDPFAVSCGQETMRDYKEQFSLFQATFSQL-----QDYVPDKGVDGVVFDLGVSSMQI 118 +D+DP A+ + + E+F+ + F+QL Q V V+G ++DLGVSS Q+ Sbjct: 56 IDQDPAALQACSDRL---GERFTPLRGNFAQLHRLLKQANVAPSSVNGFLYDLGVSSHQL 112 Query: 119 DCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177 D +RGFSF GPLDMRM S +SA+DVVN + ++L RI+ GEE+ + R+A I Sbjct: 113 DTPERGFSFLSDGPLDMRMDPSAPLSAADVVNTYSEEELARIIHAYGEERHSRRVARVIA 172 Query: 178 KRRQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236 R+ PF TT++L+ LI + + F +N IHPATR+FQALRI VN E++ + L SA Sbjct: 173 ACRREKPFTTTKELADLIHRDIAKFYRNESIHPATRTFQALRIEVNGELDAITTSLESAL 232 Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA-HPAVFQSITKKVVVP 295 L+ GG+L V+SFHSLEDR++K+FF + + + H + + +T+K ++ Sbjct: 233 TYLRPGGILAVISFHSLEDRIIKQFFRQHASTCICPPEVWQCRCQHQPLLEILTRKPLIA 292 Query: 296 TQEDVAFNRRSRSAKLRAGMRT 317 + + N RSRSAKLR RT Sbjct: 293 DEAEKQLNPRSRSAKLRVARRT 314 >gi|311087120|gb|ADP67200.1| S-adenosyl-methyltransferase MraW [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 312 Score = 216 bits (549), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 123/307 (40%), Positives = 191/307 (62%), Gaps = 15/307 (4%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSC 73 I H+PV+ +++I L + +D+TFG GG+S K + ++DRDP A S Sbjct: 4 IFKHIPVMKKELIDSLKIKKNGIYIDSTFGTGGHSNEILKKLGQSGRLYSIDRDPIAFSI 63 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQK 129 G + ++D +F + FS+L D+ ++ V+G++FDLGVSS+QID RGFSF+ Sbjct: 64 GSK-IKD--SRFHIINENFSKLLDFAKNEKIIGKVNGIIFDLGVSSIQIDDYRRGFSFKN 120 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM+ + GISAS+ + ++NVK+++ +L GEE+ + +IA+AI +R Q +T Sbjct: 121 DGPLDMRMNPNYGISASEWLFESNVKEISFVLKNFGEERFSRKIAYAIKRRSQIKKITST 180 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+++I+KT+ +KN HPA RSFQA+RI++N E+EE+ + L S K LK GG + ++ Sbjct: 181 LELANIIKKTIP-TKNKFKHPARRSFQAIRIYINQELEEIQKALESTLKILKPGGRISII 239 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV---VVPTQEDVAFNRR 305 SFHSLEDRLVKKF S K + M + + K+ ++PTQ ++ N R Sbjct: 240 SFHSLEDRLVKKFMIKNSTKAIIPYGMPITEEQLNRLTTCKLKIINRILPTQNEINNNPR 299 Query: 306 SRSAKLR 312 +RS+ LR Sbjct: 300 ARSSVLR 306 >gi|332799086|ref|YP_004460585.1| Ribosomal RNA small subunit methyltransferase H [Tepidanaerobacter sp. Re1] gi|332696821|gb|AEE91278.1| Ribosomal RNA small subunit methyltransferase H [Tepidanaerobacter sp. Re1] Length = 320 Score = 215 bits (548), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 122/311 (39%), Positives = 174/311 (55%), Gaps = 19/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 HVP+LL K I +L+P PG V +DAT G GG+ R K I +D+D A+S +E Sbjct: 5 HVPILLHKTIEMLDPKPGGVYVDATLGGGGHFRELLKKAEYEGTFIGIDQDEVAISTAKE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + L F L+ + + +DG++FDLGVSS Q D G RGFS+ K PL Sbjct: 65 NFSKFSYDIRLIHDNFYNLKKIIKENKLSEIDGILFDLGVSSYQFDEGSRGFSYNKDAPL 124 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM +SA DVVN+ + +L +I+ GEE A RIA I + R TT +L Sbjct: 125 DMRMDQRKTLSAKDVVNKMSRDELKQIISEYGEESWAGRIADFICEARSRKEITTTGELV 184 Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + ++ HPA ++FQALRI+VN E+E L ++ A + LK GG + V++FH Sbjct: 185 EIIKNAIPARARRKGGHPARKTFQALRIYVNEELEILDSSIKDAVELLKPGGRICVITFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNA------HPAVFQSITKKVVVPTQEDVAFNRR 305 SLEDR+VK F K++A + P A H V + +T K + P+QE++ N R Sbjct: 245 SLEDRIVKNAF-----KLLATACICPKEALICTCNHTKVLKVLTSKPIYPSQEEIESNPR 299 Query: 306 SRSAKLRAGMR 316 +RSAKLR + Sbjct: 300 ARSAKLRVAQK 310 >gi|295696471|ref|YP_003589709.1| S-adenosyl-methyltransferase MraW [Bacillus tusciae DSM 2912] gi|295412073|gb|ADG06565.1| S-adenosyl-methyltransferase MraW [Bacillus tusciae DSM 2912] Length = 315 Score = 215 bits (548), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 117/311 (37%), Positives = 193/311 (62%), Gaps = 12/311 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H PVLL +V+A+L P PG + +D T G GG++++ + + +I +D+D A++ +E Sbjct: 5 HEPVLLHEVLAILQPRPGGLYVDGTLGGGGHAQAILEAAAPDGRLIGIDQDDEALTASKE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + Y + + + F ++++ + +GVDG++ D+G+SS Q+D +RGFS++ P Sbjct: 65 RLTPYGGRVTTVKGNFRRIKEILWGLGVIEGVDGILLDVGLSSPQVDEAERGFSYRSDAP 124 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM SG ++A D+VN +L R++ GEE+ A+RIA AIV+RRQ +TT +L Sbjct: 125 LDMRMDLSGTLTARDIVNSWPEGELARVVRDYGEERWAARIAKAIVRRRQRQAIETTGEL 184 Query: 192 SSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 + L+++ + ++ + HPA R+FQALRI VN+E+ L +G++ A + L+ GG L V++F Sbjct: 185 AELVKEAIPAAARRHGPHPARRTFQALRIAVNDELGALEEGVKGALEVLRPGGRLAVIAF 244 Query: 251 HSLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 HSLEDR+VK+ A +RS + P V + I ++ +VP E++A N R+RS Sbjct: 245 HSLEDRIVKRILAEEARSCICPPEAPVCTCGRRPRV-RLIGRRPIVPGPEELARNPRARS 303 Query: 309 AKLRAGMRTVE 319 AKLR R + Sbjct: 304 AKLRGAERLAQ 314 >gi|219682152|ref|YP_002468536.1| hypothetical protein BUAPTUC7_222 [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|254813208|sp|B8D7C6|RSMH_BUCAT RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|219621885|gb|ACL30041.1| hypothetical protein BUAPTUC7_222 [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] Length = 312 Score = 215 bits (548), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 123/307 (40%), Positives = 191/307 (62%), Gaps = 15/307 (4%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSC 73 I H+PV+ +++I L + +D+TFG GG+S K + ++DRDP A S Sbjct: 4 IFKHIPVMKKELIDSLKIKKNGIYIDSTFGTGGHSNEILKKLGQSGRLYSIDRDPIAFSI 63 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQK 129 G + ++D +F + FS+L D+ ++ V+G++FDLGVSS+QID RGFSF+ Sbjct: 64 GSK-IKD--SRFHIINENFSKLLDFAKNEKIIGKVNGIIFDLGVSSIQIDDYRRGFSFKN 120 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM+ + GISAS+ + ++NVK+++ +L GEE+ + +IA+AI +R Q +T Sbjct: 121 DGPLDMRMNPNYGISASEWLFESNVKEISFVLKNFGEERFSRKIAYAIKRRSQIKKITST 180 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+++I+KT+ +KN HPA RSFQA+RI++N E+EE+ + L S K LK GG + ++ Sbjct: 181 LELANIIKKTIP-TKNKFKHPARRSFQAIRIYINQELEEIHKALESTLKILKPGGRISII 239 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV---VVPTQEDVAFNRR 305 SFHSLEDRLVKKF S K + M + + K+ ++PTQ ++ N R Sbjct: 240 SFHSLEDRLVKKFMIKNSTKAIIPYGMPITEEQLNRLTTCKLKIINRILPTQNEINNNPR 299 Query: 306 SRSAKLR 312 +RS+ LR Sbjct: 300 ARSSVLR 306 >gi|193659891|ref|XP_001947856.1| PREDICTED: probable S-adenosyl-L-methionine-dependent methyltransferase CG14683-like [Acyrthosiphon pisum] Length = 351 Score = 215 bits (548), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 126/330 (38%), Positives = 184/330 (55%), Gaps = 28/330 (8%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVS 72 H H PVLLE+ I+ L+P G I+D TFGAGG++ + V LDRDP A + Sbjct: 20 HNSRPHKPVLLEEAISYLSPKKGHNIIDMTFGAGGHTERILQENDTTVVYCLDRDPTACA 79 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSF 127 ++ Y + + FS L + + G DG++FD G SSMQ D RGFS Sbjct: 80 MAKQLSERYPNRVIPLKGKFSDLPVLLKNLGCKMNSFDGILFDFGASSMQFDTASRGFSI 139 Query: 128 QKSGPLDMRMSCS--GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-AP 184 K+GPLDMRM I+A+DV+ +A+ DL +I + GEEKQ+ +IA+A+++ R P Sbjct: 140 SKNGPLDMRMDPEEQTITAADVLAKADQSDLYKIFKVYGEEKQSKKIANAVIEARYLFKP 199 Query: 185 FQTTQDLSSLIQKTVYFSKNNRI-----HPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 +TT+D L+Q + + HPAT+ FQALRIFVNNE+ E+ + A L Sbjct: 200 LKTTRDFCELVQNVCDNEMRSDMLHRPSHPATKVFQALRIFVNNELNEINHSIVLASHYL 259 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMA----VRHMIPSNAH---------PAVFQ 286 K GG+++ V+FHSLED +VK+ + MA ++++ P A+ + + Sbjct: 260 KMGGVMVTVAFHSLEDTIVKRHIQGNINENMANTLPLKYINPMQAYDKEFMDVVNDSCWH 319 Query: 287 SITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 I K V+ P+ E+V N RSRSA+LRA +R Sbjct: 320 QIHKHVITPSVEEVESNPRSRSARLRAAVR 349 >gi|332305217|ref|YP_004433068.1| S-adenosyl-methyltransferase MraW [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172546|gb|AEE21800.1| S-adenosyl-methyltransferase MraW [Glaciecola agarilytica 4H-3-7+YE-5] Length = 311 Score = 215 bits (547), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 128/306 (41%), Positives = 187/306 (61%), Gaps = 19/306 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+ VLL++ + L+ P V LDATFG GG+S+ S+ +IALDRDP A+ + Sbjct: 7 HLSVLLQESLDGLSIKPDGVYLDATFGRGGHSKQILTQLSDKGRLIALDRDPSAIKSAKA 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 D + FS+ FS+++D + VDG++ DLGVSS Q+D +RGFSF + GP Sbjct: 67 LANDPR--FSIHHCNFSEMEDVLTSLELHGKVDGILMDLGVSSPQLDEPERGFSFMREGP 124 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ G SA+ + A +D+ +++ GEEK RIAH IV RQ AP TT L Sbjct: 125 LDMRMNPTKGQSAAQWLAHAEEQDIAQVIKEFGEEKFGKRIAHGIVNARQQAPITTTAQL 184 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +I V K+ HPATRSFQ +RI++N+E++E+ GL+SA +L +GG L V+SFH Sbjct: 185 AEIIDIAVPV-KDKFKHPATRSFQGIRIYINSELDEIRTGLKSALNSLNSGGRLSVISFH 243 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP-----SNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 SLEDRLVK+F +S + + V H +P ++H A+ K + P+ E+++ N R+ Sbjct: 244 SLEDRLVKRFIREQS-RGLQVPHGLPIMQSEIDSHKAL--KAIGKAIKPSSEELSRNVRA 300 Query: 307 RSAKLR 312 RS+ LR Sbjct: 301 RSSVLR 306 >gi|157963630|ref|YP_001503664.1| S-adenosyl-methyltransferase MraW [Shewanella pealeana ATCC 700345] gi|262826529|sp|A8H992|RSMH_SHEPA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|157848630|gb|ABV89129.1| S-adenosyl-methyltransferase MraW [Shewanella pealeana ATCC 700345] Length = 315 Score = 215 bits (547), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 125/309 (40%), Positives = 184/309 (59%), Gaps = 15/309 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQ 75 +H+ VLL + +A LN P + +D TFG GG+SR + +G N +IA+DRDP A++ + Sbjct: 6 EHLSVLLAETVAGLNIRPDGIYIDGTFGRGGHSRKVLEELGPNGRLIAIDRDPQAIAAAE 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + D + F + F QL DYV D G +DGV+ D GVSS Q+D +RGFSF + G Sbjct: 66 QFKDDSR--FQIVHGGFGQLADYVEDLGLKGQIDGVLLDFGVSSPQLDDAERGFSFLRDG 123 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S G +A+ + +A ++D+ + GEEK + IA I R+ APF T+D Sbjct: 124 PLDMRMDNSQGETAAQWLARAEIEDMAWVFKTYGEEKNSRHIARCIAADREKAPFLRTKD 183 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ LI + + N+ HPATR FQA+RI++N+E+E++ Q L A L G L V+SF Sbjct: 184 LADLIARITKNKERNK-HPATRVFQAIRIYINSELEQIDQALEGALAVLAPEGRLSVISF 242 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIP---SNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 HSLEDR+VK+F R+ + +V H +P + + + K + P+ E+V N R+R Sbjct: 243 HSLEDRMVKRFI-RRNSQGESVPHGLPITEAEINKSRKLKAMGKAIKPSVEEVERNARAR 301 Query: 308 SAKLRAGMR 316 S+ LR R Sbjct: 302 SSVLRIAER 310 >gi|254797245|ref|YP_003082087.1| S-adenosyl-methyltransferase MraW [Neorickettsia risticii str. Illinois] gi|254590494|gb|ACT69856.1| S-adenosyl-methyltransferase MraW [Neorickettsia risticii str. Illinois] Length = 296 Score = 215 bits (547), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 123/295 (41%), Positives = 173/295 (58%), Gaps = 18/295 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSNVIALDRDPFAVSCGQETM 78 H PVLL + + L P G V +DATFGAGGY+R+ + V A+DRD Q Sbjct: 13 HKPVLLSEALKFLAPKNGAVYVDATFGAGGYTRAILSSVDCFVYAIDRDETVKRFFQLIE 72 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138 D+ ++ + A F ++ + + VDG+VFDLGVS+MQ+ DRGFSF GPLDMRM Sbjct: 73 SDFPKRTTFINANFVDIEALLGEVKVDGIVFDLGVSTMQLKVADRGFSFLHEGPLDMRMD 132 Query: 139 CSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK 197 + I +A +VN + I+ GEE+ + +IAHAIV R+ TT L+ ++ + Sbjct: 133 RNTILTAETIVNSYTEVKIASIIYQFGEERMSRKIAHAIVDARRKKRITTTSSLAEIV-R 191 Query: 198 TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRL 257 + + + +I PAT++FQALRIFVN+E+ L GLR+A LK GG +VVSFHSLEDR+ Sbjct: 192 SCFPKRYYKIDPATKTFQALRIFVNDELGALECGLRTALTMLKVGGRAVVVSFHSLEDRI 251 Query: 258 VKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 VK F S H F +TKK+VVP++++V N SRSA++R Sbjct: 252 VKHLFRS---------------VHGNGFNLLTKKIVVPSRDEVRENPSSRSARMR 291 >gi|288919045|ref|ZP_06413386.1| S-adenosyl-methyltransferase MraW [Frankia sp. EUN1f] gi|288349585|gb|EFC83821.1| S-adenosyl-methyltransferase MraW [Frankia sp. EUN1f] Length = 327 Score = 214 bits (546), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 125/305 (40%), Positives = 183/305 (60%), Gaps = 12/305 (3%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74 H PVL E+V+ LL PA PG +++D T G GG+S + + + +I LDRDP A++ Sbjct: 5 HTPVLTERVVELLTPAMQAPGAIVVDTTVGLGGHSLALLEAFPRARLIGLDRDPRALAYS 64 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + D + L + QL D + GV +G++FDLGVSSMQ+D +RGF++ + Sbjct: 65 RHRLADLGTRVDLVHMVYDQLPDALSGLGVAEVNGILFDLGVSSMQLDMDERGFAYSRDA 124 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM G +A+DV+N +V LTRIL GEE+ A RIA A+V RQ+APF T+ Sbjct: 125 PLDMRMDQERGPTAADVLNTYDVDSLTRILRNYGEERFARRIAQAVVSARQTAPFTTSAR 184 Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L LI+ + ++ +PA R+FQALRI VN E++ L + L +A AL GG L+V+S Sbjct: 185 LVDLIRDAIPAAARRTGGNPAKRTFQALRIEVNTELDVLERALPAAFDALAVGGRLVVLS 244 Query: 250 FHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 +HSLEDRLVK+ R+ V +IP A P + +T+ + +++ N R+ S Sbjct: 245 YHSLEDRLVKRSLGPRAVPAVPPDMPVIPDEARP-TLRWLTRGAEPASDQEIERNARAGS 303 Query: 309 AKLRA 313 +LRA Sbjct: 304 VRLRA 308 >gi|291300155|ref|YP_003511433.1| S-adenosyl-methyltransferase MraW [Stackebrandtia nassauensis DSM 44728] gi|290569375|gb|ADD42340.1| S-adenosyl-methyltransferase MraW [Stackebrandtia nassauensis DSM 44728] Length = 336 Score = 214 bits (546), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 124/316 (39%), Positives = 191/316 (60%), Gaps = 10/316 (3%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCG 74 HVPV E+V LL PA P V +DAT GAGG+S + + + VI +DRDP A+ Sbjct: 12 HVPVFAERVCQLLAPAFDRPDPVCVDATLGAGGHSLALLEAHPSLTVIGIDRDPDALELA 71 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + + ++F +A + +L + + + GVD G++FDLGVSSMQ+D +RGF++ + Sbjct: 72 GKRLARFGDRFRPARAVYDELDEVLDETGVDQISGILFDLGVSSMQLDVAERGFAYAQDA 131 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S G++A++VVN +DL+RIL I GEE+ A RIA +IV +R+ AP +++++ Sbjct: 132 PLDMRMDQSQGMTAAEVVNSYAERDLSRILRIYGEERFAPRIAKSIVAQRKRAPIESSRE 191 Query: 191 LSSLIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ L++ V + R +P+ R+FQALRI VN E++ L L A AL G ++V+S Sbjct: 192 LADLVRDAVPAATRRRGGNPSKRTFQALRIEVNRELDVLRDALPRAIDALAPDGRIVVLS 251 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 +HSLEDR+VK+ R+ I + +TK P++ ++A N R+ SA Sbjct: 252 YHSLEDRIVKRELGERTKSSAPAGLPIDVPGTEPTLRWLTKGAQPPSEAEIAANPRAASA 311 Query: 310 KLRAGMRTVERSIEDD 325 KLRA + R+ + D Sbjct: 312 KLRAAQKLGGRNQDHD 327 >gi|328950951|ref|YP_004368286.1| Ribosomal RNA small subunit methyltransferase H [Marinithermus hydrothermalis DSM 14884] gi|328451275|gb|AEB12176.1| Ribosomal RNA small subunit methyltransferase H [Marinithermus hydrothermalis DSM 14884] Length = 281 Score = 214 bits (545), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 124/300 (41%), Positives = 175/300 (58%), Gaps = 25/300 (8%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 HVPVL + + LL G + +DAT G G++R + G VI D+DP A++ + Sbjct: 3 HVPVLYHETLELLAVQRGGLYVDATLGGAGHTRGILERGGQVIGFDQDPEAIARVRALRL 62 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 D +L + F L+ ++ + GV DGV+ DLGVSS D +RGFS++ GPLDMR Sbjct: 63 D---GLTLVEGNFRHLEAHLNELGVAEVDGVLADLGVSSYHFDNPERGFSYRHEGPLDMR 119 Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 MS G +A+DVVN V++L RIL GEE +A RIA I + R+ P +TT L+ +++ Sbjct: 120 MSGEGPTAADVVNTYPVEELARILRTFGEEPRAWRIARRIAEVREQQPIRTTTQLAEVVR 179 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 + V + HPA ++FQALRI+VN+E+ L L +A + LK GG L V+SFHSLEDR Sbjct: 180 QAVGWRGAG--HPARKTFQALRIYVNDELGALEAFLEAAARVLKPGGRLAVISFHSLEDR 237 Query: 257 LVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 +VK+F A FQ +TKK + P+ + A N R+RSAKLR G+R Sbjct: 238 IVKRFLKE-----------------DARFQVLTKKPITPSDAERATNPRARSAKLRGGVR 280 >gi|225677071|ref|ZP_03788076.1| S-adenosyl-methyltransferase [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590893|gb|EEH12115.1| S-adenosyl-methyltransferase [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 314 Score = 214 bits (545), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 126/323 (39%), Positives = 187/323 (57%), Gaps = 39/323 (12%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78 H PVLL+++++LL+P G + +DATFGAGGYS++ + V A+DRD + Sbjct: 3 HTPVLLKEMLSLLSPQDGGIYVDATFGAGGYSKAILESADCKVYAIDRDETVTKFYDDLS 62 Query: 79 RDYKEQFSLFQATFSQLQDYV------------------------PDKGVDGVVFDLGVS 114 Y ++ LF FS ++ + GVDGVVFD+GVS Sbjct: 63 VRYPDRIKLFIEKFSNIKSILSSVEPSPVIPVLDTGKNNWSRAGMTSNGVDGVVFDIGVS 122 Query: 115 SMQIDCGDRGFSFQKSGPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIA 173 SMQ+D GDRGFSF GPLDM M + S I+AS VN +++ + G E+ + +IA Sbjct: 123 SMQLDNGDRGFSFLHDGPLDMSMDNSSYINASTFVNALREEEIANTIYNYGGERHSRKIA 182 Query: 174 HAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLR 233 AI+ R+ +TT +L+ ++ ++V F ++I PATR+FQA+RI+VN+E+ EL +G++ Sbjct: 183 RAIINARKKKTIKTTFELADIV-RSVVFRGKSKIDPATRTFQAIRIWVNDELGELEKGIK 241 Query: 234 SAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV 293 +A + L G LIVV+FHSLEDR+VK FF + + ++ F + KKV+ Sbjct: 242 AASEILSENGKLIVVTFHSLEDRIVKTFF----------KDLCATDCK--TFSLLNKKVI 289 Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316 + E+V+ N RSRSAKLRA R Sbjct: 290 EASIEEVSANPRSRSAKLRAIQR 312 >gi|167622387|ref|YP_001672681.1| S-adenosyl-methyltransferase MraW [Shewanella halifaxensis HAW-EB4] gi|262826525|sp|B0TQM9|RSMH_SHEHH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|167352409|gb|ABZ75022.1| S-adenosyl-methyltransferase MraW [Shewanella halifaxensis HAW-EB4] Length = 315 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 124/309 (40%), Positives = 182/309 (58%), Gaps = 15/309 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQ 75 +H+ VLL + +A LN P + +D TFG GG+SR + +G N +IA+DRDP A++ + Sbjct: 6 EHLSVLLTETVAGLNIKPDGIYIDGTFGRGGHSRKVLEELGPNGRLIAIDRDPQAIAAAE 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + D + F + F QL DYV D G +DGV+ D GVSS Q+D +RGFSF + G Sbjct: 66 QFKDDSR--FQIVHGGFGQLADYVEDLGLKGKIDGVLLDFGVSSPQLDDAERGFSFLRDG 123 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S G +A+ + +A ++D+ + GEEK + IA I R+ APF T++ Sbjct: 124 PLDMRMDNSQGQTAAQWLARAEIEDMAWVFKTYGEEKNSRHIARCIAADREKAPFLRTKE 183 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ LI + + N+ HPATR FQA+RI++N+E+E++ Q L A L G L V+SF Sbjct: 184 LADLIARITKNKERNK-HPATRVFQAIRIYINSELEQIDQALEGALTVLAPEGRLSVISF 242 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK---KVVVPTQEDVAFNRRSR 307 HSLEDR+VK+F R+ + +V H +P K K + P+ E++ N R+R Sbjct: 243 HSLEDRMVKRFI-RRNSQGESVPHGLPITEEEINKSRKLKGVGKAIKPSAEEIERNARAR 301 Query: 308 SAKLRAGMR 316 S+ LR R Sbjct: 302 SSVLRIAQR 310 >gi|190571322|ref|YP_001975680.1| S-adenosyl-methyltransferase MraW [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018718|ref|ZP_03334526.1| S-adenosyl-methyltransferase MraW [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|226709924|sp|B3CMB5|RSMH_WOLPP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|190357594|emb|CAQ55035.1| S-adenosyl-methyltransferase MraW [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995669|gb|EEB56309.1| S-adenosyl-methyltransferase MraW [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 294 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 120/302 (39%), Positives = 183/302 (60%), Gaps = 17/302 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78 H+PVLL++++ L+P G + +DATFGAGGYS++ + V A+DRD + Sbjct: 3 HIPVLLKEMLLQLSPHSGGIYVDATFGAGGYSKAILESADCKVYAVDRDETVTKFYDDLN 62 Query: 79 RDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 Y + LF FS +++ + KG++G+VFD+GVSSMQ+D GDRGFSF + GPL+M Sbjct: 63 VKYPNRIKLFIEKFSNIKNLLDSNNIKGINGIVFDVGVSSMQLDNGDRGFSFLRDGPLNM 122 Query: 136 RM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 M + S ++AS VN +++ + G E+ + RIA AIV R+ +TT +L+ + Sbjct: 123 SMDNYSHMNASTFVNALREEEIANTIYNYGGERHSRRIARAIVNARKKKIIKTTFELADI 182 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 + ++V F ++I PATR+FQA+RI+VN+E+ EL +G+++A + L G LIVV+FHSLE Sbjct: 183 V-RSVVFRGKSKIDPATRTFQAIRIWVNDELGELEKGIKAASEILSENGKLIVVTFHSLE 241 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 DR+VK F + F + KKV+ + E++ N R+RSAKLRA Sbjct: 242 DRIVKTVFKD-----------LCEPGSTKTFSLLNKKVIKASSEEINVNPRARSAKLRAI 290 Query: 315 MR 316 R Sbjct: 291 QR 292 >gi|190572794|ref|YP_001970639.1| S-adenosyl-methyltransferase MraW [Stenotrophomonas maltophilia K279a] gi|262826755|sp|B2FNN0|RSMH_STRMK RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|190010716|emb|CAQ44325.1| putative S-adenosyl-methyltransferase mraW [Stenotrophomonas maltophilia K279a] Length = 322 Score = 214 bits (544), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 124/304 (40%), Positives = 183/304 (60%), Gaps = 12/304 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H+PVL +V+ L LD TFG GG++R ++G ++ +D+DP A++ + Sbjct: 19 HLPVLYTQVLEGLRVIENGRYLDGTFGRGGHARGVLTQLGPEGRLLVMDKDPEAIAVAE- 77 Query: 77 TMRDY--KEQFSLFQATFSQLQDY-VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 RD+ + S+F+ +F+QL + +G+DGV+FDLGVSS Q+D +RGFSF K GPL Sbjct: 78 --RDFAPDPRVSIFRGSFAQLLQWDATAEGLDGVLFDLGVSSPQLDVAERGFSFGKDGPL 135 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM SG SA+ +N+ +++ +L GEE+Q+ RIA AIV RR+ PF T +L+ Sbjct: 136 DMRMDPDSGESAAQWINRVEEREIADVLWTYGEERQSRRIARAIVARREKQPFSRTAELA 195 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 LI + K+ +IHPATRSFQA+RI +N E+ +L GL +A + LK GG L V+SFHS Sbjct: 196 ELIASVMPRGKD-KIHPATRSFQAIRIHINRELADLEAGLDAAVERLKPGGRLAVISFHS 254 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK++ +R K +P + + T E++A N R+RSA LR Sbjct: 255 LEDRIVKQYM-NRLAKAPPANRRLPEAVAFVPTLDLIGGAIKATDEELAANPRARSAVLR 313 Query: 313 AGMR 316 + Sbjct: 314 VAQK 317 >gi|58584368|ref|YP_197941.1| S-adenosyl-methyltransferase MraW [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|68565413|sp|Q5GTH5|RSMH_WOLTR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|58418684|gb|AAW70699.1| Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 333 Score = 214 bits (544), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 130/339 (38%), Positives = 189/339 (55%), Gaps = 52/339 (15%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78 H+PVLL++++ L+P G + +DATFGAGGYS++ + V A+DRD + ++ Sbjct: 3 HIPVLLKEMLLQLSPQNGGIYVDATFGAGGYSKAILESADCKVYAIDRDKTVIKFYEDLN 62 Query: 79 RDYKEQFSLFQATFSQLQ--------DYV------------------------------- 99 Y + LF FS ++ +Y+ Sbjct: 63 IKYPSRVKLFIEKFSNIRSILDSNSLEYLVEPSAVSKLSSIISSGIQKKNIWISASSTGV 122 Query: 100 -PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM-SCSGISASDVVNQANVKDLT 157 P VDGVVFD+GVSSMQ+D GDRGFSF GPLDMRM + S +AS VN +++ Sbjct: 123 TPSNTVDGVVFDIGVSSMQLDDGDRGFSFLHDGPLDMRMDNSSHTNASTFVNALREEEIA 182 Query: 158 RILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQAL 217 + G E+ + RIA AIV R+ +TT +L++++ ++V F ++I PATR+FQA+ Sbjct: 183 NTIYNYGGERHSRRIARAIVNARKKKTIKTTFELANIV-RSVVFRGKSKIDPATRTFQAI 241 Query: 218 RIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP 277 RI+VN+E+ EL +G+++A + L G LIVV+FHSLEDR+VK FF S P Sbjct: 242 RIWVNDELGELEKGIKAASEILNKNGKLIVVTFHSLEDRIVKTFFKSLCE---------P 292 Query: 278 SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 + VF + KK++ + E+V N RSRSAKLRA R Sbjct: 293 RSIDCKVFSLLNKKMIKASAEEVNANPRSRSAKLRAIQR 331 >gi|71082740|ref|YP_265459.1| S-adenosyl-methyltransferase [Candidatus Pelagibacter ubique HTCC1062] gi|91762838|ref|ZP_01264803.1| S-adenosyl-methyltransferase [Candidatus Pelagibacter ubique HTCC1002] gi|88909208|sp|Q4FPN5|RSMH_PELUB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|71061853|gb|AAZ20856.1| S-adenosyl-methyltransferase [Candidatus Pelagibacter ubique HTCC1062] gi|91718640|gb|EAS85290.1| S-adenosyl-methyltransferase [Candidatus Pelagibacter ubique HTCC1002] Length = 336 Score = 214 bits (544), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 128/341 (37%), Positives = 190/341 (55%), Gaps = 18/341 (5%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRD 67 M + I + +H PVLL ++I+++ P G +D TFG GGY++ + VIALDRD Sbjct: 1 MIATIIPDVRNHYPVLLSEIISIITPQYGGTFIDCTFGQGGYTKRILNFPETKVIALDRD 60 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDY-VPDKGVDGVVFDLGVSSMQIDCGDRGFS 126 + QE ++++ FSQL + + + + V+FDLG S QI +G S Sbjct: 61 SESSIKAQELQNSFEDRLLFKNIKFSQLNNLKLKHENIKAVIFDLGYSLNQIKDPKKGLS 120 Query: 127 FQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 F G L+M+M + SA + +NQ + K+LT+I G+E + RIAH IV+ R Sbjct: 121 FDSIGELNMKMGINEFSAKEAINQLDEKELTKIFKYFGDEADSKRIAHNIVEDRSKREI- 179 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 TT++L +I+ + +N + H AT+ FQALRIFVN EI EL GL +A K +K G++ Sbjct: 180 TTEELVRIIESSKR-KRNYKTHSATKIFQALRIFVNKEISELIYGLINAAKVVKKDGVIA 238 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 VV+FHSLED++VK FF S S RHM + +F+S+ KK +VP+ +++ N S Sbjct: 239 VVTFHSLEDKIVKYFFKSLSENKSISRHMPKTEEKLNLFKSVIKKPIVPSDKEIRENPPS 298 Query: 307 RSAKLRAGMRTVERSIED---------DSFVHLPRLPTLSQ 338 RSAKLR ++ ED D F HL + LS+ Sbjct: 299 RSAKLRYVIKK-----EDFFDFETDILDKFKHLIDIENLSK 334 >gi|88858794|ref|ZP_01133435.1| S-adenosyl-methyltransferase [Pseudoalteromonas tunicata D2] gi|88819020|gb|EAR28834.1| S-adenosyl-methyltransferase [Pseudoalteromonas tunicata D2] Length = 312 Score = 213 bits (543), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 125/309 (40%), Positives = 189/309 (61%), Gaps = 17/309 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76 H+ VL+E+ I L+ P + +D TFG GG+S K +G N + A+DRDP A+ Q Sbjct: 7 HISVLMEETIDALDIKPDGIYIDGTFGRGGHSGEILKKLGENGRLQAIDRDPQAIKAAQR 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 D + FS+ TFS+++ + VDG++ D+GVSS Q+D +RGFSF K GP Sbjct: 67 FADDAR--FSIAHNTFSEIKLVAEEADLIGKVDGILLDIGVSSPQLDDAERGFSFMKDGP 124 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ S G SA++ + A+++++T ++ GEEK RIAH I++ R P +T L Sbjct: 125 LDMRMNPSAGRSAAEWLAVADLEEITWVIKTYGEEKFGRRIAHKILETRVHTPITSTAQL 184 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI + V K+ HPATR+FQA+RI++N+E+EE+ L ++ + LK GG L+V+SFH Sbjct: 185 AKLIDEAVPV-KDKHKHPATRAFQAIRIYINSELEEITTALSASLEVLKPGGRLVVISFH 243 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT----KKVVVPTQEDVAFNRRSR 307 SLEDR+VK+F +S R + +NA + Q +T K + P +E++A N R+R Sbjct: 244 SLEDRIVKQFIKKQSKGEALPRGLPLTNAQ--LQQKLTLKAIGKAIKPGEEELARNSRAR 301 Query: 308 SAKLRAGMR 316 S+ LR R Sbjct: 302 SSVLRIAER 310 >gi|56416788|ref|YP_153862.1| S-adenosyl-methyltransferase MraW [Anaplasma marginale str. St. Maries] gi|68565444|sp|Q5PAS3|RSMH_ANAMM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|56388020|gb|AAV86607.1| S-adenosyl-methyltransferase [Anaplasma marginale str. St. Maries] Length = 291 Score = 213 bits (543), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 130/303 (42%), Positives = 178/303 (58%), Gaps = 20/303 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI-ALDRDPFAVSCGQETM 78 H PVLL +V+ L+P G V +DATFG GGYSR + V+ A+D+D E + Sbjct: 3 HKPVLLNEVVEALSPKDGSVYVDATFGGGGYSRRILETAQCVVYAIDQDVVVKKYFDELL 62 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + + + +L + FS+L++ V GVD GVVFDLG S+MQ+ RGFSF SG LDM Sbjct: 63 QSFPGRLNLAISRFSKLREVVLSFGVDKVDGVVFDLGTSAMQLADASRGFSFMNSGSLDM 122 Query: 136 RMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM S + A+ VN K++ ++ G E+ + R+A AI+ R+ T DL+++ Sbjct: 123 RMCSSALRDAAMFVNTVPEKEMADVIYQYGGERYSRRVARAIIDARRKCRINNTGDLATI 182 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 I+ V S+ + I PATR+FQA+RI+VNNE+EEL GL +A + LK GG ++V SFHSLE Sbjct: 183 IRSAVPRSRVHPIDPATRTFQAIRIWVNNELEELQAGLETAAEVLKIGGKILVTSFHSLE 242 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 DR+VK F RS M F I KK ++PT E+V N RSRS KLRA Sbjct: 243 DRVVKHKF--RSLCDMG-------------FSLINKKAIMPTDEEVKNNPRSRSGKLRAI 287 Query: 315 MRT 317 R Sbjct: 288 ARV 290 >gi|157373543|ref|YP_001472143.1| S-adenosyl-methyltransferase MraW [Shewanella sediminis HAW-EB3] gi|262826558|sp|A8FQ92|RSMH_SHESH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|157315917|gb|ABV35015.1| S-adenosyl-methyltransferase MraW [Shewanella sediminis HAW-EB3] Length = 314 Score = 213 bits (542), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 125/308 (40%), Positives = 181/308 (58%), Gaps = 15/308 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76 H+ VLL + +A LN + +D TFG GG+SR K +G N +IA+DRDP A++ ++ Sbjct: 8 HLSVLLTETVAGLNIKEDGIYIDGTFGRGGHSREVLKHLGENGRLIAIDRDPQAIAAAEQ 67 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 D + FS+ F QL YV D G +DGV+ D GVSS Q+D +RGFSF + GP Sbjct: 68 FADDAR--FSIVHGGFGQLATYVEDLGLKGKIDGVLLDFGVSSPQLDDAERGFSFLRDGP 125 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G +A+D + +A ++D+ + GEEK + IA I R+ PF T++L Sbjct: 126 LDMRMDNSQGETAADWIARAEIEDMAWVFKTYGEEKNSRHIARCIAADREKTPFLRTKEL 185 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI + + N+ HPATR FQA+RI++N+E+E++ Q L A L G L V+SFH Sbjct: 186 ADLIARISKNKERNK-HPATRVFQAIRIYINSELEQIDQALEGALSVLAPHGRLSVISFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK---KVVVPTQEDVAFNRRSRS 308 SLEDR+VK+F R + +V H +P + K K + P++E+V N R+RS Sbjct: 245 SLEDRMVKRFI-RRHCQGESVPHGLPITEAEINKSRLLKGIGKAIKPSEEEVERNTRARS 303 Query: 309 AKLRAGMR 316 + LR R Sbjct: 304 SVLRIAER 311 >gi|222475152|ref|YP_002563568.1| S-adenosyl-methyltransferase (mraW) [Anaplasma marginale str. Florida] gi|255003134|ref|ZP_05278098.1| S-adenosyl-methyltransferase MraW [Anaplasma marginale str. Puerto Rico] gi|255004260|ref|ZP_05279061.1| S-adenosyl-methyltransferase MraW [Anaplasma marginale str. Virginia] gi|254813206|sp|B9KIK0|RSMH_ANAMF RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|222419289|gb|ACM49312.1| S-adenosyl-methyltransferase (mraW) [Anaplasma marginale str. Florida] Length = 291 Score = 213 bits (542), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 130/303 (42%), Positives = 178/303 (58%), Gaps = 20/303 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI-ALDRDPFAVSCGQETM 78 H PVLL +V+ L+P G V +DATFG GGYSR + V+ A+D+D E + Sbjct: 3 HKPVLLNEVVEALSPKDGSVYVDATFGGGGYSRRILETAQCVVYAIDQDVVVKKYFDELL 62 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + + + +L + FS+L++ V GVD GVVFDLG S+MQ+ RGFSF SG LDM Sbjct: 63 QSFPGRLNLAISRFSKLREVVLSFGVDKVDGVVFDLGTSAMQLADASRGFSFMNSGSLDM 122 Query: 136 RMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM S + A+ VN K++ ++ G E+ + R+A AI+ R+ T DL+++ Sbjct: 123 RMCSSALRDAAMFVNTVPEKEMADVIYQYGGERYSRRVARAIIDARRKCRINNTGDLATI 182 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 I+ V S+ + I PATR+FQA+RI+VNNE+EEL GL +A + LK GG ++V SFHSLE Sbjct: 183 IRSAVPRSRVHPIDPATRTFQAIRIWVNNELEELQAGLEAAAEVLKIGGKILVTSFHSLE 242 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 DR+VK F RS M F I KK ++PT E+V N RSRS KLRA Sbjct: 243 DRVVKHKF--RSLCDMG-------------FSLINKKAIMPTDEEVKNNPRSRSGKLRAI 287 Query: 315 MRT 317 R Sbjct: 288 ARV 290 >gi|94984873|ref|YP_604237.1| methyltransferase [Deinococcus geothermalis DSM 11300] gi|263446197|sp|Q1J0B6|RSMH_DEIGD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|94555154|gb|ABF45068.1| methyltransferase [Deinococcus geothermalis DSM 11300] Length = 308 Score = 213 bits (542), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 119/282 (42%), Positives = 173/282 (61%), Gaps = 26/282 (9%) Query: 36 PGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95 PG+VI+D T G G++R + G++VI +D+DP+A++ +E Q ++ + + + Sbjct: 34 PGRVIVDGTLGGAGHTRLLLEAGASVIGIDQDPYALNRAREAQ---LPQLTVLEGNYRDM 90 Query: 96 QDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQAN 152 ++ + GV DGV+ D+GVSS Q+D RGFS+ PLDMRM+ SG SA++VVN Sbjct: 91 RELLAGIGVTQVDGVLLDIGVSSFQLDDAARGFSYHTDAPLDMRMAQSGESAAEVVNGYP 150 Query: 153 VKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPAT 211 ++L I+ GEE+ + RIA AIV+ R AP Q+T L+ +I++ FSK IHPA Sbjct: 151 EEELAAIIYEYGEERHSRRIARAIVQARTQAPIQSTVQLAEIIKRAYPGFSKG--IHPAR 208 Query: 212 RSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMA 271 R+FQALRI VN+E+ L GLR+AE L GG L V++FHSLEDR+VK+F Sbjct: 209 RTFQALRIHVNDELGALRDGLRAAEALLTPGGRLAVIAFHSLEDRIVKRFL--------- 259 Query: 272 VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 A P +S+TK+ V ++E+ N R+RSAKLRA Sbjct: 260 -------RASP-TLKSLTKRPVEASEEERGRNPRARSAKLRA 293 >gi|226313432|ref|YP_002773326.1| S-adenosyl-methyltransferase MraW [Brevibacillus brevis NBRC 100599] gi|263445821|sp|C0ZGB3|RSMH_BREBN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|226096380|dbj|BAH44822.1| S-adenosyl-methyltransferase [Brevibacillus brevis NBRC 100599] Length = 314 Score = 213 bits (542), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 116/302 (38%), Positives = 188/302 (62%), Gaps = 9/302 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76 HV VL+++ + LN PG + +D T G G+S S G +IA+D+D +A+ +E Sbjct: 8 HVTVLMDEAVQGLNIRPGGIYVDCTLGGAGHSSLIASKLTEGGRLIAIDQDDWALDNARE 67 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + Y ++ +L ++ F ++D V D GVDGV+FDLGVSS Q+D G+RGFS+ PL Sbjct: 68 RLASYMDRVTLVKSNFRHIKDIVKDLGLSGVDGVLFDLGVSSPQLDEGERGFSYNADAPL 127 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM +SA D++N+ + +++ +I+ + GEEK + RIA IV++R+ P QTT +L Sbjct: 128 DMRMDQQAPLSAYDIINEWDEEEIAKIIWLYGEEKFSRRIARQIVQQRKKQPIQTTGELV 187 Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 LI++ + ++ HPA R+FQA+RI VN+E++ + + A + L G + V++FH Sbjct: 188 ELIKEGIPAAARRTGPHPAKRTFQAIRIAVNDELDAFKEAVVDAIEVLNPEGRVSVITFH 247 Query: 252 SLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+ K+ + S G I + + AV + IT+K ++P++E++ N+R+RSAK Sbjct: 248 SLEDRICKQIYQDFSKGCTCPPAFPICTCGNKAVVKVITRKPILPSEEELEANKRARSAK 307 Query: 311 LR 312 LR Sbjct: 308 LR 309 >gi|90407776|ref|ZP_01215954.1| S-adenosyl-methyltransferase [Psychromonas sp. CNPT3] gi|90311136|gb|EAS39243.1| S-adenosyl-methyltransferase [Psychromonas sp. CNPT3] Length = 313 Score = 213 bits (542), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 127/311 (40%), Positives = 190/311 (61%), Gaps = 12/311 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MG--SNVIALDRDPFAVSCGQ 75 +H+ VLL++ + L + +DATFG GG+SR K +G +IA+DRDP A+ + Sbjct: 3 EHITVLLDEAVNGLAIKEEGIYIDATFGRGGHSRHILKQLGPKGRLIAIDRDPRAIVTAE 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 M++ +FS+ FS L +YV + G +DGV+ DLGVSS Q+D +RGFSF + G Sbjct: 63 LLMQE-DARFSIIHGPFSDLANYVKELGLAGQIDGVLLDLGVSSPQLDEAERGFSFMRDG 121 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM +GISA+ + +A+V+D++ +L GEEK A RIA AIV R+ PF T D Sbjct: 122 PLDMRMDPTTGISAAQWLAKADVEDISWVLKTFGEEKFAYRIARAIVADREETPFLRTLD 181 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L++LI + + + HPATRSFQA+RI+VN+E+EE+ + L A L GLL V+SF Sbjct: 182 LANLISRLCP-KREKKKHPATRSFQAIRIYVNSELEEIHKVLDGALDILAIDGLLSVISF 240 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK--KVVVPTQEDVAFNRRSRS 308 HSLEDR+VK+F + + ++A +++ K + P+ ++ N+RSRS Sbjct: 241 HSLEDRIVKRFIRKQEKGREYPPGLPLTDAQMQSGKTMKAQGKALKPSAGEIEQNKRSRS 300 Query: 309 AKLRAGMRTVE 319 + LR +T + Sbjct: 301 SVLRVAKKTAQ 311 >gi|327399188|ref|YP_004340057.1| Ribosomal RNA small subunit methyltransferase H [Hippea maritima DSM 10411] gi|327181817|gb|AEA33998.1| Ribosomal RNA small subunit methyltransferase H [Hippea maritima DSM 10411] Length = 297 Score = 213 bits (542), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 124/305 (40%), Positives = 180/305 (59%), Gaps = 26/305 (8%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H VLL++ I L P G + +D T GA G++ K+ S VIA D+D A+ QE Sbjct: 3 HKSVLLKETITTLQPRNGGIYIDMTLGAAGHTEKLLKLSSPSGIVIAFDKDQDAIKHAQE 62 Query: 77 TMRD-YKEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +++ Y ++ L ++ +++++ VDGV+ DLGVS Q+ DRGFSF P Sbjct: 63 KLKETYGDRLILINDDYANIKEHLRRLEIDEVDGVIMDLGVSLDQLKS-DRGFSFNIDAP 121 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + ++A +VN ++++L RI+ + GEE A RIA AIVK R P TT++L Sbjct: 122 LDMRMDKNKPLTAEKIVNHWDMEELERIIRLYGEENFARRIAKAIVKNR---PIHTTKEL 178 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI+ TV S + RIHPATR+FQALRI VN+E+E L +GL+ A +ALK G++ +SFH Sbjct: 179 AELIELTVPRSVSRRIHPATRTFQALRIVVNDELESLQKGLKGAIEALKENGIICAISFH 238 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+VK K V + + KK + PT ++V N+ SRSAKL Sbjct: 239 SLEDRIVKNILRDYKQK--------------GVLRLLNKKPIRPTPQEVKSNKHSRSAKL 284 Query: 312 RAGMR 316 R ++ Sbjct: 285 RCALK 289 >gi|119944895|ref|YP_942575.1| S-adenosyl-methyltransferase MraW [Psychromonas ingrahamii 37] gi|262825199|sp|A1SU11|RSMH_PSYIN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|119863499|gb|ABM02976.1| S-adenosyl-methyltransferase MraW [Psychromonas ingrahamii 37] Length = 315 Score = 213 bits (541), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 128/311 (41%), Positives = 186/311 (59%), Gaps = 14/311 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + L + +D TFG GG+SR ++G+ +IA+DRDP A+ G+ Sbjct: 4 HTTVLLDEAVNGLGLKTDGIYVDGTFGRGGHSRHILGQLGAQGRLIAIDRDPRAIETGEA 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 M++ +F++ FS L +Y+ + G +DGV+ DLGVSS QID DRGFSF + GP Sbjct: 64 LMKE-DPRFTIIHGPFSGLAEYIKELGLAGQIDGVLLDLGVSSPQIDDADRGFSFMRDGP 122 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM SGISA+ + +A+V D+ +L GEEK A RIA AIV R PF T L Sbjct: 123 LDMRMDPTSGISAAQWLAKADVDDIGWVLKTFGEEKFAFRIARAIVADRTETPFLRTLQL 182 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI++ + + + HPATRSFQA+RI+VN+E+EE+ + L A + L GG L V+SFH Sbjct: 183 AQLIER-LCPKREKKKHPATRSFQAIRIYVNSELEEIHKVLDGALEILAIGGQLSVISFH 241 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNA---HPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SLEDR+VK+F + + + A H +S+ K + P+ E++ N R+RS Sbjct: 242 SLEDRIVKRFIRKQEKGREYPPGLPLTEAQMQHGKTLKSLA-KALKPSAEEINENTRARS 300 Query: 309 AKLRAGMRTVE 319 + LR + E Sbjct: 301 SVLRVAQKIAE 311 >gi|16759115|ref|NP_454732.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29140665|ref|NP_804007.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213052857|ref|ZP_03345735.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213426162|ref|ZP_03358912.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213585689|ref|ZP_03367515.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213858022|ref|ZP_03384993.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|20139004|sp|Q8Z9H4|RSMH_SALTI RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|25302091|pir||AE0517 conserved hypothetical protein STY0140 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16501405|emb|CAD01277.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29136289|gb|AAO67856.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 313 Score = 213 bits (541), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 127/311 (40%), Positives = 191/311 (61%), Gaps = 19/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + LN P + +D TFG GG+SR ++G ++A+DRDP A++ Q Sbjct: 7 HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAQ- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 T+ D + FS+ FS L DYV ++ +DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 66 TINDPR--FSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G SA++ + A D+ +L GEE+ A RIAHAIV+R + P T++L Sbjct: 124 LDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIAHAIVERNREQPMTRTKEL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L +GG L ++SFH Sbjct: 184 AEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLASGGRLSIISFH 242 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306 SLEDR+VK+F SR +V A M + +++ K ++P +++VA N R+ Sbjct: 243 SLEDRIVKRFMREQSRGPQVPAGLPMTEAQLKKLGGRELRALGK--LMPGEKEVAENPRA 300 Query: 307 RSAKLRAGMRT 317 RS+ LR RT Sbjct: 301 RSSVLRIAERT 311 >gi|254994991|ref|ZP_05277181.1| S-adenosyl-methyltransferase MraW [Anaplasma marginale str. Mississippi] Length = 291 Score = 213 bits (541), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 129/303 (42%), Positives = 178/303 (58%), Gaps = 20/303 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI-ALDRDPFAVSCGQETM 78 H PVLL +V+ L+P G V +DATFG GGYSR + V+ A+D+D E + Sbjct: 3 HKPVLLNEVVEALSPKDGSVYVDATFGGGGYSRRILETAQCVVYAIDQDVVVKKYFDELL 62 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + + + +L + FS+L++ V GVD GVVFDLG S+MQ+ RGFSF SG LDM Sbjct: 63 QSFPGRLNLAISRFSKLREVVLSFGVDKVDGVVFDLGTSAMQLADASRGFSFMNSGSLDM 122 Query: 136 RMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM S + A+ VN K++ ++ G E+ + R+A AI+ R+ T DL+++ Sbjct: 123 RMCSSALRDAAMFVNTVPEKEMADVIYQYGGERYSRRVARAIIDARRKCRINNTGDLATI 182 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 I+ V S+ + I PATR+FQA+RI+VNNE+EEL GL +A + LK GG ++V SFHSLE Sbjct: 183 IRSAVPRSRVHPIDPATRTFQAIRIWVNNELEELQAGLEAAAEVLKIGGKILVTSFHSLE 242 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 DR+VK F RS M F I KK ++PT E++ N RSRS KLRA Sbjct: 243 DRVVKHKF--RSLCDMG-------------FSLINKKAIMPTDEEIKNNPRSRSGKLRAI 287 Query: 315 MRT 317 R Sbjct: 288 ARV 290 >gi|291296375|ref|YP_003507773.1| S-adenosyl-methyltransferase MraW [Meiothermus ruber DSM 1279] gi|290471334|gb|ADD28753.1| S-adenosyl-methyltransferase MraW [Meiothermus ruber DSM 1279] Length = 283 Score = 212 bits (540), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 123/301 (40%), Positives = 170/301 (56%), Gaps = 28/301 (9%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETM 78 +H PVL + + L+ PG + +DAT G G++R + G V+A D+DP A++ Q Sbjct: 2 NHTPVLYHEALDWLSIRPGGLYVDATLGGAGHTRGILERGGQVVAFDQDPAAIARAQALG 61 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 +L QA F +L + +G VDG++ DLGVSS +D RGFS+Q GPLDM Sbjct: 62 ---LPNLTLIQANFRELVPELAKRGTPQVDGLLADLGVSSFHLDDAGRGFSYQHEGPLDM 118 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RM ++A +VVN + L IL GEE +A RIA IV+ R P TT L+ +I Sbjct: 119 RMGQGELTAHEVVNTYPEEALAEILFRYGEEPRARRIARFIVEHR---PIHTTTQLAEVI 175 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 ++ F HPA +SFQALRI++N+E+ L Q LRSAE LK GG L+V+SFHSLED Sbjct: 176 RRATGFRSAG--HPARKSFQALRIYINDELGALEQLLRSAEAVLKPGGRLVVISFHSLED 233 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 RLVK F + +S+TKK +VP++ + N R+RSAK+R Sbjct: 234 RLVKHFLREST-----------------ALRSLTKKPIVPSEAEQRENPRARSAKMRVAE 276 Query: 316 R 316 R Sbjct: 277 R 277 >gi|259907409|ref|YP_002647765.1| S-adenosyl-methyltransferase MraW [Erwinia pyrifoliae Ep1/96] gi|224963031|emb|CAX54514.1| S-adenosyl-methyltransferase MraW [Erwinia pyrifoliae Ep1/96] gi|283477242|emb|CAY73151.1| S-adenosyl methionine adenyltransferase [Erwinia pyrifoliae DSM 12163] Length = 313 Score = 212 bits (540), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 127/313 (40%), Positives = 190/313 (60%), Gaps = 21/313 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + LN P + +D TFG GG+SR ++G + + A+DRDP A++ E Sbjct: 7 HTTVLLDEAVNGLNIKPDGIYIDGTFGRGGHSRLILSQLGEHGRLFAIDRDPQAIAAAAE 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +F++ FS L +Y +G +DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 67 IT---DPRFTIIHGPFSALAEYAEQRGLTGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G+SA++ + +A D++ +L GEE+ A RIA AIV+R + P T++L Sbjct: 124 LDMRMDPTRGLSAAEWLLKAEESDISFVLKTFGEERFARRIARAIVERNREQPMTRTKEL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +I K+ HPATRSFQA+RI+VN+E+EE+ Q L+ A AL AGG L V+SFH Sbjct: 184 ADVIYAATPV-KDKFKHPATRSFQAIRIWVNSELEEIEQALKGALSALAAGGRLSVISFH 242 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP------SNAHPAVFQSITKKVVVPTQEDVAFNRR 305 SLEDR+VK+F +S + V H +P S+ +++ K ++P + +VA N R Sbjct: 243 SLEDRIVKRFMREQS-RGPQVPHGLPMTEAQLSSMGGRQLKALGK--MMPGESEVADNPR 299 Query: 306 SRSAKLRAGMRTV 318 +RS+ LR RT Sbjct: 300 ARSSVLRIAERTA 312 >gi|289740101|gb|ADD18798.1| putative SAM-dependent methyltransferases [Glossina morsitans morsitans] Length = 381 Score = 212 bits (540), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 130/331 (39%), Positives = 185/331 (55%), Gaps = 35/331 (10%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQE 76 H PVL + I LNP P K+ +D TFGAGG+ + CK V ALDRDP A Q+ Sbjct: 50 HTPVLCAEAINYLNPGPQKIYIDMTFGAGGHCKKLLDSCK-DIKVYALDRDPVAYELAQQ 108 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG-----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++Y+ + + FS L + ++ VDG++FD G SSMQ + +RGFS K+G Sbjct: 109 MTKEYEGRLTPLLGRFSDLPHLLKEQNIVRHSVDGILFDFGCSSMQFEEPERGFSVSKNG 168 Query: 132 PLDMRMSCSG------ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA-P 184 PLDMRM C+ ++A+DV+ +A DL +IL I GEEK A +IA AIV R + P Sbjct: 169 PLDMRMDCAPGMNNDQVTAADVLARAEEPDLVKILRIYGEEKAAKKIARAIVDARSALHP 228 Query: 185 FQTTQDLSSLIQKTVY-----FSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 +TT+ L+ L+ ++ K R H AT++FQALRIFVNNE+ E+ G+ A Sbjct: 229 IKTTKQLADLVASCLHETPFRLDKLQRPTHVATKTFQALRIFVNNELNEINYGMVLANAY 288 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSIT---- 289 L+ G L+ ++FHSLED +VK+ +A + + V QSIT Sbjct: 289 LRLQGRLVAITFHSLEDTIVKRHLYGNVIDGLANPVPLKYCGYDVVHDEETMQSITLSNW 348 Query: 290 ----KKVVVPTQEDVAFNRRSRSAKLRAGMR 316 K V++P +E++ N RSRSAKLRA ++ Sbjct: 349 KPLHKHVILPGEEEIKHNSRSRSAKLRAAVK 379 >gi|310765090|gb|ADP10040.1| S-adenosyl-methyltransferase MraW [Erwinia sp. Ejp617] Length = 313 Score = 212 bits (540), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 127/313 (40%), Positives = 190/313 (60%), Gaps = 21/313 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + LN P + +D TFG GG+SR ++G + + A+DRDP A++ E Sbjct: 7 HTTVLLDEAVNGLNIKPDGIYIDGTFGRGGHSRLILSQLGEHGRLFAIDRDPQAIAAAAE 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +F++ FS L +Y +G +DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 67 IT---DPRFTIIHGPFSALAEYAEQRGLTGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G+SA++ + +A D++ +L GEE+ A RIA AIV+R + P T++L Sbjct: 124 LDMRMDPTRGLSAAEWLLKAEESDISFVLKTFGEERFARRIARAIVERNREQPMTRTKEL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +I K+ HPATRSFQA+RI+VN+E+EE+ Q L+ A AL AGG L V+SFH Sbjct: 184 ADVIYAATPV-KDKFKHPATRSFQAIRIWVNSELEEIEQALKGALSALAAGGRLSVISFH 242 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP------SNAHPAVFQSITKKVVVPTQEDVAFNRR 305 SLEDR+VK+F +S + V H +P S+ +++ K ++P + +VA N R Sbjct: 243 SLEDRIVKRFMREQS-RGPQVPHGLPMTEAQLSSMGGRQLKALGK--MMPGESEVADNPR 299 Query: 306 SRSAKLRAGMRTV 318 +RS+ LR RT Sbjct: 300 ARSSVLRIAERTA 312 >gi|291557117|emb|CBL34234.1| S-adenosyl-methyltransferase MraW [Eubacterium siraeum V10Sc8a] Length = 308 Score = 212 bits (540), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 119/299 (39%), Positives = 177/299 (59%), Gaps = 8/299 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77 H+PVLL + I L+ P + +D T G G+S K +I DRDP AV +E Sbjct: 7 HIPVLLSETIESLDIKPDGIYVDCTTGFAGHSSEIAKRLTTGRLIGFDRDPDAVKAAEEK 66 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++DY +L FS + + + GV DGV+ DLGVSS Q+D +RGFS+ + PLD Sbjct: 67 LKDY--PHTLINRKFSTFDESLDEIGVGKVDGVLMDLGVSSYQLDTAERGFSYHEDAPLD 124 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRMS SG+SA DVVN+ + + L +IL GEEK A I I+K R++AP +TT +L+ + Sbjct: 125 MRMSKSGLSAYDVVNEYSKEQLEKILFEYGEEKFAHGIVSGILKARETAPIKTTLELAEI 184 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 +++ V +P ++FQA+RI VN E++EL +G+ A + LKAGG L +++FHS+E Sbjct: 185 VKRNVPLKVRKEKNPCKKTFQAIRIEVNGELDELKKGMSEAFERLKAGGRLAIITFHSIE 244 Query: 255 DRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 DR+VK F +G + +++ +K V ++E++A N RSRSAKLR Sbjct: 245 DRIVKNTFREYCTGCTCPPDFPVCVCGKKPRGRTVYRKPVTASEEELAVNNRSRSAKLR 303 >gi|197265544|ref|ZP_03165618.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197243799|gb|EDY26419.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 313 Score = 212 bits (539), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 127/311 (40%), Positives = 190/311 (61%), Gaps = 19/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + LN P + +D TFG GG+SR ++G ++A+DRDP A++ Q Sbjct: 7 HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAQ- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 T+ D + FS+ FS L DYV ++ +DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 66 TINDPR--FSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G SA++ + A D+ +L GEE+ A RIAHAIV+R + P T++L Sbjct: 124 LDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIAHAIVERNREQPMTRTKEL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L ++SFH Sbjct: 184 AEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSIISFH 242 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306 SLEDR+VK+F SR +V A M + +++ K ++P +++VA N R+ Sbjct: 243 SLEDRIVKRFMREQSRGPQVPAGLPMTEAQLKKLGGRELRALGK--LMPGEKEVAENPRA 300 Query: 307 RSAKLRAGMRT 317 RS+ LR RT Sbjct: 301 RSSVLRIAERT 311 >gi|194364373|ref|YP_002026983.1| S-adenosyl-methyltransferase MraW [Stenotrophomonas maltophilia R551-3] gi|262826731|sp|B4SJW8|RSMH_STRM5 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|194347177|gb|ACF50300.1| S-adenosyl-methyltransferase MraW [Stenotrophomonas maltophilia R551-3] Length = 322 Score = 212 bits (539), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 123/304 (40%), Positives = 183/304 (60%), Gaps = 12/304 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H+PVL +V+ L LD TFG GG++R ++G ++ +D+DP A++ + Sbjct: 19 HLPVLYTQVLEGLRVIENGRYLDGTFGRGGHARGVLTQLGPEGRLLVMDKDPEAIAVAE- 77 Query: 77 TMRDY--KEQFSLFQATFSQLQDY-VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 RD+ + S+F+ +F+QL + +G+DGV+FDLGVSS Q+D +RGFSF K GPL Sbjct: 78 --RDFAPDPRVSIFRGSFAQLLQWDATAEGLDGVLFDLGVSSPQLDVAERGFSFGKDGPL 135 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM SG SA+ +N+ +++ +L GEE+Q+ RIA AIV RR+ PF T +L+ Sbjct: 136 DMRMDPDSGESAAQWINRVEDREIADVLWTYGEERQSRRIARAIVARREKQPFSRTAELA 195 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 LI + K+ +IHPATRSFQA+RI +N E+ +L GL +A + LK GG L ++SFHS Sbjct: 196 ELIASVMPRGKD-KIHPATRSFQAIRIHINRELADLEAGLDAAVERLKPGGRLAIISFHS 254 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK++ +R K +P + + T E++A N R+RSA LR Sbjct: 255 LEDRIVKQYM-NRLAKAPPANRRLPEAEVFVPTLDLIGGAIKATDEELAANPRARSAVLR 313 Query: 313 AGMR 316 + Sbjct: 314 VAQK 317 >gi|218780979|ref|YP_002432297.1| S-adenosyl-methyltransferase MraW [Desulfatibacillum alkenivorans AK-01] gi|263447357|sp|B8FBS6|RSMH_DESAA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|218762363|gb|ACL04829.1| S-adenosyl-methyltransferase MraW [Desulfatibacillum alkenivorans AK-01] Length = 326 Score = 212 bits (539), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 129/303 (42%), Positives = 177/303 (58%), Gaps = 10/303 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HV V+ ++V++LL+PAPG V++D TFG GG++R+ + +I D D AV+ Q Sbjct: 5 HVSVMKQEVLSLLSPAPGHVVVDGTFGGGGHARAILERILPDGLLIGTDLDEDAVTNAQA 64 Query: 77 TMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 D + F +F FS ++ D G +G+V DLGVS ++ RGFSFQ+ PL Sbjct: 65 CFADVQNNFRIFHDNFSNIRAVLDQCGLAGANGIVLDLGVSLHLLEKSGRGFSFQREEPL 124 Query: 134 DMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 DMRM S G A DVVN + +L RI GEE+QA RIA IV+RR+ P T+ L Sbjct: 125 DMRMDGSGGGPKAMDVVNAYSQDELARIFLEYGEERQAKRIARRIVQRREDEPITTSGRL 184 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ V K RIHPATR FQALRI VNNE+ L + L + L GG L ++SFH Sbjct: 185 ADIVASAVK-GKPGRIHPATRVFQALRIHVNNELAHLEKFLETCLDCLLPGGRLCIISFH 243 Query: 252 SLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK+ FA+ + G + + + +TKKVV P+Q +V N SRSAK Sbjct: 244 SLEDRIVKRRFAALAQGCTCPPDFPVCICGNQPKVKILTKKVVKPSQAEVEKNPMSRSAK 303 Query: 311 LRA 313 +RA Sbjct: 304 IRA 306 >gi|332991932|gb|AEF01987.1| 16S rRNA m(4)C1402 methyltranserfase [Alteromonas sp. SN2] Length = 313 Score = 212 bits (539), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 126/304 (41%), Positives = 183/304 (60%), Gaps = 15/304 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76 HV VLL++ I L P + +DATFG GG+S +GS+ +IA DRDP A+ + Sbjct: 9 HVSVLLDECIEALAIKPNGIYIDATFGRGGHSAHILDALGSDGTLIAFDRDPQAIEAAKR 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 D + F + + F + + + G +DGV+ DLGVSS Q+D +RGFSF + GP Sbjct: 69 FADDSR--FRIIHSPFGDMAEEIEALGLTGKIDGVLMDLGVSSPQLDDAERGFSFLRDGP 126 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G SA+D + +A +D+T+++ GEEK RIAHAIV R++ P T L Sbjct: 127 LDMRMDTSRGESAADWLARAEEQDITQVIKEFGEEKFGKRIAHAIVNTRETTPITRTAQL 186 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++LI + V K+ HPATR+FQ +RI++N E+E+L GL++A + L G L V+SFH Sbjct: 187 AALIDEAVPV-KDKFKHPATRAFQGIRIYINAELEQLRTGLKAATQVLAKEGRLAVISFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK---KVVVPTQEDVAFNRRSRS 308 SLEDRLVK+F +S K +V H +P + K + + P++ ++A N RSRS Sbjct: 246 SLEDRLVKRFIKDQS-KGKSVPHNLPITQAEIDADKVLKALSRAIKPSELEIANNVRSRS 304 Query: 309 AKLR 312 + LR Sbjct: 305 SVLR 308 >gi|66809695|ref|XP_638570.1| hypothetical protein DDB_G0284343 [Dictyostelium discoideum AX4] gi|60467186|gb|EAL65220.1| hypothetical protein DDB_G0284343 [Dictyostelium discoideum AX4] Length = 367 Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 115/315 (36%), Positives = 181/315 (57%), Gaps = 25/315 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQE 76 H PV +++V+ +LNP P KV +DATFG GG+SR CK VIA DRDP + Sbjct: 59 HKPVFIKEVLEILNPQPNKVYIDATFGMGGHSRGILETCK-DCYVIAFDRDPKVFEMTKP 117 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVD-----GVVFDLGVSSMQIDCGDRGFSFQKS- 130 ++K++ +TFS ++ + +K +D G+++D GVSS QID DRGFSF+K Sbjct: 118 LRSEFKDRLITINSTFSSMRSALKEKNLDHLKISGILYDFGVSSYQIDTADRGFSFKKEL 177 Query: 131 -GPLDMRMS--CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 GPLDMRM+ S I+A D++N + KDL I GEEK IA+ I+++R+ P + Sbjct: 178 EGPLDMRMNQNSSQITAYDIINTFSEKDLRDIFFYYGEEKHTKNIANEILRKRKIEPIKN 237 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T DL +++ ++ + + +R F++LR+FVN+E+ E+ GL E+ L+ L+ Sbjct: 238 TSDLVKIVESSIPYPM--ALKTISRVFRSLRMFVNDELNEIKIGLTQGEQLLEPNSPLLA 295 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +SFHS+EDR+VK++ + P+ P + P++E++ +N RS+ Sbjct: 296 ISFHSIEDRIVKQYLNKYTTIEEPTFKFSPTYKSP----------IFPSKEELEWNPRSK 345 Query: 308 SAKLRAGMRTVERSI 322 SA LR +RT + I Sbjct: 346 SAILRTAIRTSNKPI 360 >gi|109899828|ref|YP_663083.1| S-adenosyl-methyltransferase MraW [Pseudoalteromonas atlantica T6c] gi|123170716|sp|Q15Q09|RSMH_PSEA6 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|109702109|gb|ABG42029.1| S-adenosyl-methyltransferase MraW [Pseudoalteromonas atlantica T6c] Length = 311 Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 126/306 (41%), Positives = 187/306 (61%), Gaps = 19/306 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H+ VLL++ I L P V LDATFG GG+++ ++ N +IALDRDP A+ + Sbjct: 7 HLSVLLQESIDGLAIKPDGVYLDATFGRGGHTKQILSQLSPNGRLIALDRDPSAIEAAKA 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 D + FS+ FS+++D + VDG++ DLGVSS Q+D +RGFSF + GP Sbjct: 67 LADDAR--FSIHHCNFSEMEDVLTSLELHGKVDGILMDLGVSSPQLDEPERGFSFMREGP 124 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ G SA+ + A +D+ +++ GEEK RIAH IV RQ AP TT L Sbjct: 125 LDMRMNPTKGQSAAQWLAHAEEQDIAQVIKEFGEEKFGKRIAHGIVNARQEAPITTTAQL 184 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +I V K+ HPATRSFQ +RI++N+E++E+ GL++A +L +GG L V+SFH Sbjct: 185 AEIIDLAVPV-KDKFKHPATRSFQGIRIYINSELDEIRTGLKAALNSLNSGGRLSVISFH 243 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP-----SNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 SLEDRLVK+F +S + + V H +P ++H A+ K + P+ ++++ N R+ Sbjct: 244 SLEDRLVKRFIREQS-RGLQVPHGLPIMQAEIDSHKAM--KAIGKAIKPSSDELSRNVRA 300 Query: 307 RSAKLR 312 RS+ LR Sbjct: 301 RSSVLR 306 >gi|328778908|ref|XP_001120634.2| PREDICTED: probable S-adenosyl-L-methionine-dependent methyltransferase CG14683-like [Apis mellifera] Length = 388 Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 128/330 (38%), Positives = 183/330 (55%), Gaps = 33/330 (10%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 H+PV++ +V+ L P+PGK+ +D TFGAGG+S + N+ ALDRDP A + Sbjct: 61 HIPVMVNEVLHYLEPSPGKIFVDMTFGAGGHSMKILESSPNIKIFALDRDPIAHQFALKL 120 Query: 78 MRDYKEQFSLFQATFSQLQDY-----VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 Y EQ FS+L V +DG +FD G SSMQ+D G+RGFS K GP Sbjct: 121 SEKYPEQIIPLLGRFSELPQLLCKYKVNVNSIDGFLFDFGCSSMQLDIGERGFSLSKDGP 180 Query: 133 LDMRMSC----SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQT 187 LDMRM +A++V+ + +DL IL I G EK A +IA AI++ R + +T Sbjct: 181 LDMRMDGFRYPQEPTAAEVLKEITEEDLAFILKIYGNEKYAKKIARAIIETRYTFRNLKT 240 Query: 188 TQDLSSLIQKTVYFSKNNRI----HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 TQ+L+ LI+ + + +++ H AT++FQALRIFVNNE+ E+ G+ A LK G Sbjct: 241 TQELAQLIESVISEKRFDQLGRFTHCATKTFQALRIFVNNELNEINYGIIIAGFYLKTNG 300 Query: 244 LLIVVSFHSLEDRLVKKFFA---------------SRSGKVMAVRHMIPSNAHPAVFQSI 288 LI +SFHSLED +VK+ + S GK + M N P ++ + Sbjct: 301 RLITISFHSLEDTIVKRHMSANITETVANKIPLKFSDYGKHYTLTEMKALNRIP--WKML 358 Query: 289 TKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318 K V+ PT+E++ N RSRSAK RA + + Sbjct: 359 HKHVITPTEEEINKNPRSRSAKFRAITKVI 388 >gi|170728860|ref|YP_001762886.1| S-adenosyl-methyltransferase MraW [Shewanella woodyi ATCC 51908] gi|262826580|sp|B1KKY5|RSMH_SHEWM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|169814207|gb|ACA88791.1| S-adenosyl-methyltransferase MraW [Shewanella woodyi ATCC 51908] Length = 313 Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 125/308 (40%), Positives = 179/308 (58%), Gaps = 15/308 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76 H+ VLL + +A LN + +D TFG GG+SR K +G N +IA+DRDP A+ ++ Sbjct: 7 HLSVLLTETVAGLNIKEDGIYIDGTFGRGGHSREVLKHLGENGRLIAIDRDPQAIEAAKQ 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 D + FS+ F QL YV + G +DGV+ D GVSS Q+D +RGFSF + GP Sbjct: 67 FADDAR--FSIVHGGFGQLATYVEELGLKGKIDGVLLDFGVSSPQLDDAERGFSFLRDGP 124 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G +A+D + +A V+D+ + GEEK + IA I R+ PF T++L Sbjct: 125 LDMRMDNSQGETAADWLARAEVEDMAWVFKTYGEEKNSRHIARCIAADREKTPFLRTKEL 184 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI + + SK HPATR FQA+RI++N+E+E++ Q L A L G L V+SFH Sbjct: 185 ADLIAR-ISKSKERNKHPATRVFQAIRIYINSELEQIDQALEGALTVLAPQGRLSVISFH 243 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK---KVVVPTQEDVAFNRRSRS 308 SLEDR+VK+F R + +V H +P + K K + P+ E++ N R+RS Sbjct: 244 SLEDRMVKRFI-RRHSQGESVPHGLPITEAEINKTRLLKGVGKAIKPSDEEIERNTRARS 302 Query: 309 AKLRAGMR 316 + LR R Sbjct: 303 SVLRVAQR 310 >gi|163751816|ref|ZP_02159032.1| S-adenosyl-methyltransferase [Shewanella benthica KT99] gi|161328301|gb|EDP99462.1| S-adenosyl-methyltransferase [Shewanella benthica KT99] Length = 313 Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 125/308 (40%), Positives = 180/308 (58%), Gaps = 15/308 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76 H+ VLL + +A LN + +D TFG GG+SR K +G N +IA+DRDP A+ ++ Sbjct: 7 HLSVLLSETVAGLNIKQDGIYIDGTFGRGGHSREVLKHLGGNGRLIAIDRDPQAIEAAKQ 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 D + FS+ F QL YV D G +DGV+ D GVSS Q+D +RGFSF + GP Sbjct: 67 FADDSR--FSIVHGGFGQLATYVEDLGLKGKIDGVLLDFGVSSPQLDDAERGFSFLRDGP 124 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G +A++ + +A ++D+ + GEEK + IA I RQ PF T++L Sbjct: 125 LDMRMDNSQGETAAEWIARAEIEDMAWVFKTYGEEKNSRHIARCIAADRQKTPFLRTKEL 184 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI + + N+ HPATR FQA+RI++N+E+E++ Q L A L G L V+SFH Sbjct: 185 ADLIARICKSKERNK-HPATRVFQAIRIYINSELEQIDQALEGALVVLAPQGRLSVISFH 243 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK---KVVVPTQEDVAFNRRSRS 308 SLEDR+VK+F R+ + +V H +P + K K P+ E+V N+R+RS Sbjct: 244 SLEDRMVKRFI-RRNCQGKSVPHGLPITEDELDKTRLLKSIGKATKPSAEEVERNKRARS 302 Query: 309 AKLRAGMR 316 + LR R Sbjct: 303 SILRVAER 310 >gi|85712541|ref|ZP_01043589.1| S-adenosyl-methyltransferase [Idiomarina baltica OS145] gi|85693675|gb|EAQ31625.1| S-adenosyl-methyltransferase [Idiomarina baltica OS145] Length = 315 Score = 211 bits (537), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 127/307 (41%), Positives = 181/307 (58%), Gaps = 13/307 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H+ VLLE+ I L P + +DATFG GG++R+ S VIALD+DP A++ Q Sbjct: 8 HISVLLEESIRALVTDPDGIYIDATFGRGGHTRALLSKLSPKGRVIALDQDPQAIASAQA 67 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 D E+FS+ FS L + + V G++FDLGVSS Q+D +RGFSF + GP Sbjct: 68 LADD--ERFSIIHTPFSDLAHIIEQQQLAHQVTGILFDLGVSSPQLDDAERGFSFMRDGP 125 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G +A+D ++ A D+T +L GEE+ A +IA AIV R+ PF T+ L Sbjct: 126 LDMRMDSSRGETAADWLSYAEEDDITYVLKTYGEERFARKIARAIVHDREQKPFTRTRQL 185 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI + V SK HPATRSFQA+RI VN E+E++ L ++ ALK G L+V+SFH Sbjct: 186 AELIGRLVP-SKEKHKHPATRSFQAIRIHVNRELEQIEDALEASLTALKEDGRLVVISFH 244 Query: 252 SLEDRLVKKFFASRS--GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK+F + S +V + + + ++ K + P+ ++ N R+RS+ Sbjct: 245 SLEDRIVKRFMRTHSQPKQVPPGLPITEAELNKDRRLALESKAIKPSAAELELNPRARSS 304 Query: 310 KLRAGMR 316 LR R Sbjct: 305 VLRIARR 311 >gi|239978979|ref|ZP_04701503.1| putative S-adenosylmethionine-dependent methyltransferase [Streptomyces albus J1074] Length = 343 Score = 211 bits (537), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 126/315 (40%), Positives = 183/315 (58%), Gaps = 12/315 (3%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74 HVPV+L + + LL PA PG V++D T G GG+S + + ++ALDRD A+ Sbjct: 30 HVPVMLRRCLDLLAPALAEPGAVVVDCTLGLGGHSEALLATFPAARLVALDRDKEALRLS 89 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E + + ++ +L A + +L + + G V GV+FDLGVSSMQ+D RGF++ + Sbjct: 90 GERLARHGDRATLVHAVYDELPEVLDRLGIPRVQGVLFDLGVSSMQLDEAGRGFAYAQDA 149 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM +GISA++V+N DL RIL GEEKQA RI A+V R PF T+ Sbjct: 150 PLDMRMDQTTGISAAEVLNTYAPGDLVRILRAYGEEKQARRIVSAVVDERAKEPFTTSAR 209 Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I+ + +K +PA R+FQALRI VN E+ L + + +A +L GG L V+S Sbjct: 210 LVEVIRDALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVASLAVGGRLAVLS 269 Query: 250 FHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 +HSLEDRLVK+ A+ + ++P P + +T+ +PT+E+VA NRR+ Sbjct: 270 YHSLEDRLVKQVLAAGAASTAPPGLPVVPERYQPR-LKLLTRGAELPTEEEVAENRRAAP 328 Query: 309 AKLRAGMRTVERSIE 323 A+LR R E E Sbjct: 329 ARLRGAQRIREEHQE 343 >gi|258511253|ref|YP_003184687.1| S-adenosyl-methyltransferase MraW [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477979|gb|ACV58298.1| S-adenosyl-methyltransferase MraW [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 316 Score = 211 bits (537), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 116/303 (38%), Positives = 185/303 (61%), Gaps = 9/303 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H VLLE+ + L P PG V +DAT G GG++ + VIA D+D A++ + Sbjct: 5 HETVLLEEAVEALRPQPGGVYVDATLGGGGHTARLLERSVPDGAVIAFDQDETAIAHAEP 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 R Y + +L +A F+++++ + GV DGV+FDLGVSS Q D +RGFS+ GPL Sbjct: 65 LKRQYPGRLTLVKANFAEMEERLRALGVTAVDGVLFDLGVSSPQFDLPERGFSYWHEGPL 124 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM ++A ++VN+ + ++L RI+ GEE+ A+ IA AI + R P +TT +L+ Sbjct: 125 DMRMDRHQPLTAREIVNEWDEQELARIIREYGEERFATAIARAITRARSKKPIETTTELA 184 Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +++ + ++ + HPA R+FQA+RI VN+E+ L +G+ +A +AL+ GG L V++FH Sbjct: 185 EIVKSAIPAAARRSGPHPARRTFQAIRIAVNDELGALERGMEAAFRALRPGGRLSVITFH 244 Query: 252 SLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR VK+ F + + G + + + + +++K V P+ E++ N R+RSAK Sbjct: 245 SLEDRAVKRLFQTWAQGCICPPEFPVCQCGRKPLGRMVSRKPVTPSSEELERNPRARSAK 304 Query: 311 LRA 313 LRA Sbjct: 305 LRA 307 >gi|291450857|ref|ZP_06590247.1| S-adenosylmethionine-dependent methyltransferase [Streptomyces albus J1074] gi|291353806|gb|EFE80708.1| S-adenosylmethionine-dependent methyltransferase [Streptomyces albus J1074] Length = 341 Score = 211 bits (537), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 126/315 (40%), Positives = 183/315 (58%), Gaps = 12/315 (3%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74 HVPV+L + + LL PA PG V++D T G GG+S + + ++ALDRD A+ Sbjct: 28 HVPVMLRRCLDLLAPALAEPGAVVVDCTLGLGGHSEALLATFPAARLVALDRDKEALRLS 87 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E + + ++ +L A + +L + + G V GV+FDLGVSSMQ+D RGF++ + Sbjct: 88 GERLARHGDRATLVHAVYDELPEVLDRLGIPRVQGVLFDLGVSSMQLDEAGRGFAYAQDA 147 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM +GISA++V+N DL RIL GEEKQA RI A+V R PF T+ Sbjct: 148 PLDMRMDQTTGISAAEVLNTYAPGDLVRILRAYGEEKQARRIVSAVVDERAKEPFTTSAR 207 Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I+ + +K +PA R+FQALRI VN E+ L + + +A +L GG L V+S Sbjct: 208 LVEVIRDALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVASLAVGGRLAVLS 267 Query: 250 FHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 +HSLEDRLVK+ A+ + ++P P + +T+ +PT+E+VA NRR+ Sbjct: 268 YHSLEDRLVKQVLAAGAASTAPPGLPVVPERYQPR-LKLLTRGAELPTEEEVAENRRAAP 326 Query: 309 AKLRAGMRTVERSIE 323 A+LR R E E Sbjct: 327 ARLRGAQRIREEHQE 341 >gi|332654098|ref|ZP_08419842.1| S-adenosyl-methyltransferase MraW [Ruminococcaceae bacterium D16] gi|332517184|gb|EGJ46789.1| S-adenosyl-methyltransferase MraW [Ruminococcaceae bacterium D16] Length = 327 Score = 211 bits (537), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 124/302 (41%), Positives = 180/302 (59%), Gaps = 10/302 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77 H PVLL++ I LN P + LD T G G+SR + +I +DRD A+ Q+ Sbjct: 7 HRPVLLDECIEALNIRPDGIYLDGTLGRAGHSREIARRLTTGRLICVDRDQAALDAAQDR 66 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++D+ ++ +L + F QL D + D+ GVDG++FDLGVSS Q+D G RGFS+ PL Sbjct: 67 LKDWMDRVTLVHSNFDQL-DAILDRLGLAGVDGMLFDLGVSSPQLDDGSRGFSYMADAPL 125 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S G++A+DVVNQ + ++L RIL GEE+ A IA AIV+RRQ P +TT +L Sbjct: 126 DMRMDRSEGLTAADVVNQWSQEELRRILSQYGEERYAPSIAAAIVRRRQDKPIETTLELV 185 Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + + + HPA RSFQA+RI VN+E+ + + +R+A L GG L V++FH Sbjct: 186 DIIKSAMPARALKEKQHPAKRSFQAIRIAVNDELASVDRMVRAAIPRLNKGGRLAVITFH 245 Query: 252 SLEDRLVKKFFAS-RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK A G + + +K ++P++ +V N R+RSAK Sbjct: 246 SLEDRIVKTDLAEFAKGCTCPPDFPVCVCGKTPDVKLTPRKPILPSEREVEENPRARSAK 305 Query: 311 LR 312 LR Sbjct: 306 LR 307 >gi|326779858|ref|ZP_08239123.1| Ribosomal RNA small subunit methyltransferase H [Streptomyces cf. griseus XylebKG-1] gi|326660191|gb|EGE45037.1| Ribosomal RNA small subunit methyltransferase H [Streptomyces cf. griseus XylebKG-1] Length = 321 Score = 211 bits (537), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 124/311 (39%), Positives = 184/311 (59%), Gaps = 15/311 (4%) Query: 20 HVPVLLEKVIALLNPA------PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAV 71 HVPV+L++ + LL PA P V++D T G GG+S + + +IALDRD A+ Sbjct: 6 HVPVMLQRCLDLLAPALQDPAHPEPVVVDCTLGLGGHSEALLASFPAARLIALDRDKEAL 65 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQ 128 E + Y ++ +L A + +L + + G V GV+FDLGVSSMQ+D DRGF++ Sbjct: 66 RLSGERLAPYGDRATLVHAVYDELPEVLARLGIPKVQGVLFDLGVSSMQLDEADRGFAYA 125 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + PLDMRM S G+ A++V+N +L RIL GEEKQA RI A+V+ R+ PF Sbjct: 126 QDAPLDMRMDQSTGMGAAEVLNTYPPGELVRILRAYGEEKQAKRIVSAVVREREKEPFSN 185 Query: 188 TQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 + L LI+ + +K +PA R+FQALRI VN E+ L + + +A +L GG + Sbjct: 186 SARLVELIRDALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVDSLDVGGRIA 245 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V+S+HSLEDRLVK+ FA+ + ++P P + Q +T+ +PT+++VA NRR Sbjct: 246 VLSYHSLEDRLVKQVFAAGAANTAPPGLPVVPERYQPRLKQ-LTRGAELPTEQEVAENRR 304 Query: 306 SRSAKLRAGMR 316 + A+LR R Sbjct: 305 AAPARLRGAQR 315 >gi|91094747|ref|XP_971437.1| PREDICTED: similar to s-adenosyl-methyl transferase mraw [Tribolium castaneum] gi|270010790|gb|EFA07238.1| hypothetical protein TcasGA2_TC010595 [Tribolium castaneum] Length = 451 Score = 211 bits (537), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 129/334 (38%), Positives = 189/334 (56%), Gaps = 44/334 (13%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 HVPV++++V+ L P + ILD TFGAGG+SR + NV +ALDRDP A Q+ Sbjct: 123 HVPVMVQEVLHFLKPEGNQTILDMTFGAGGHSRRILEQAPNVKLLALDRDPVAFGYAQKL 182 Query: 78 MRDYKEQFSLFQATFSQLQDY-----VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 ++ + + FS++ + + +D ++FD G SSMQ D RGFS +GP Sbjct: 183 AEEFPNRVTPLLGRFSEVPELLSLNKIRQNSIDAILFDFGCSSMQFDTPSRGFSVSHNGP 242 Query: 133 LDMRMSCSGI----SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQT 187 LDMRM +A+DV+ +A +DL +I+ + GEEK+A +IA A+++ R T Sbjct: 243 LDMRMDSGRFPEDPTAADVLAKATEEDLYKIIKVYGEEKKARKIARAVIEARYLFKTLST 302 Query: 188 TQDLSSLIQKTVYFSKNNRI-------HPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 T++L+ L+ FS R+ H AT++FQALRIFVNNE+ E+ GL A K LK Sbjct: 303 TEELADLVDSV--FSGEIRLDKLQRPSHNATKTFQALRIFVNNELNEINYGLIIAHKYLK 360 Query: 241 AGGLLIVVSFHSLEDRLVKKF----------------FASRSGKV--MAVRHMIPSNAHP 282 GG ++ ++FHSLED +VK+ ++S S V V+ ++ SN Sbjct: 361 LGGRVVTLTFHSLEDTIVKRHLLGNLIANTPNPLPLKYSSHSFDVDGQIVKEVMESN--- 417 Query: 283 AVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 + S+TK V+VP E+V N RSRSAKLRA +R Sbjct: 418 --WLSLTKHVLVPKYEEVENNPRSRSAKLRAAIR 449 >gi|263460426|sp|A5G8K8|RSMH_GEOUR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 312 Score = 211 bits (537), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 129/305 (42%), Positives = 180/305 (59%), Gaps = 13/305 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+ V+ +VI L P G + +D T G GG++R + + +I DRD A++ E Sbjct: 6 HISVMAAEVIQYLAPRAGGIYVDGTLGGGGHARQILEASAPDGLLIGFDRDREAIAIAAE 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + Y E+ L Q F+ L + + + G+D G + D+GVSS Q+D RGFSFQ PL Sbjct: 66 RLAPYGERVRLVQRNFACLAETLDEMGIDAIDGFLLDVGVSSHQLDTAARGFSFQHDAPL 125 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S G SASD+VN + DL RI+ GEE+ A RIA IVKRR+ +P +TT L Sbjct: 126 DMRMDVSSGQSASDLVNTLSEADLARIIWDYGEERWAKRIAAFIVKRREESPIETTMQLV 185 Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ V + + R+HPATR+FQALRI VN+E+ L + L + + LK GG +V+SFH Sbjct: 186 DVIKGAVPRGAWDVRLHPATRTFQALRIAVNDELASLEKALAAGVRFLKKGGRGVVISFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP---SNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SLEDR+VK F S + + IP P V + IT K V+ + +V+ N RSRS Sbjct: 246 SLEDRIVKTSFRSFAQGCTCPKS-IPRCVCGKLPLV-KVITGKPVMANEAEVSMNPRSRS 303 Query: 309 AKLRA 313 A+LRA Sbjct: 304 ARLRA 308 >gi|213612818|ref|ZP_03370644.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 304 Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 126/308 (40%), Positives = 191/308 (62%), Gaps = 19/308 (6%) Query: 23 VLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQETMR 79 VLL++ + LN P + +D TFG GG+SR ++G ++A+DRDP A++ Q T+ Sbjct: 1 VLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAQ-TIN 59 Query: 80 DYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 D + FS+ FS L DYV ++ +DG++ DLGVSS Q+D +RGFSF + GPLDM Sbjct: 60 DPR--FSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFMRDGPLDM 117 Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM + G SA++ + +A D+ +L GEE+ A RIAHAIV+R + P T++L+ + Sbjct: 118 RMDPTRGQSAAEWLQRAEEADIAWVLKTFGEERFAKRIAHAIVERNREQPMTRTKELAEV 177 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 + K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L +GG L ++SFHSLE Sbjct: 178 VAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLASGGRLSIISFHSLE 236 Query: 255 DRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRSRSA 309 DR+VK+F SR +V A M + +++ K ++P +++VA N R+RS+ Sbjct: 237 DRIVKRFMREQSRGPQVPAGLPMTEAQLKKLGGRELRALGK--LMPGEKEVAENPRARSS 294 Query: 310 KLRAGMRT 317 LR RT Sbjct: 295 VLRIAERT 302 >gi|156405687|ref|XP_001640863.1| predicted protein [Nematostella vectensis] gi|156227999|gb|EDO48800.1| predicted protein [Nematostella vectensis] Length = 378 Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 132/341 (38%), Positives = 196/341 (57%), Gaps = 34/341 (9%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSC 73 HT+ H+PV+ + + L P G+V +DATFGAGG++ + V A+DRDP AV Sbjct: 32 HTL--HIPVMSRECLGFLAPKDGEVFVDATFGAGGHTCAILNSAKCKVFAVDRDPVAVEI 89 Query: 74 GQ--ETMRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFS 126 Q T +YK Q Q FS+L + + + G+ DG++ D+G SSMQ D RGFS Sbjct: 90 AQVLSTRPEYKGQLIPLQGKFSELFELLSNNGIKKESLDGMLLDIGPSSMQFDDPLRGFS 149 Query: 127 FQKSGPLDMRMSC---------SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177 K GPLDMRM S +A+DVVN + ++L +L G E+ A+RI+ A++ Sbjct: 150 LSKDGPLDMRMDSENDTKSSRSSSFTAADVVNSISERELISVLRHYGGERDAARISRAVI 209 Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFSKNNRI----HPATRSFQALRIFVNNEIEELAQGLR 233 K R TT+ L++++ V F + +++ HPAT++FQALRI VN+E+ EL + L+ Sbjct: 210 KARDREHIMTTRQLAAIVANAVGFGRKDKLNRFAHPATKTFQALRILVNDELNELHKALK 269 Query: 234 SAEKALKAGGLLIVVSFHSLEDRLVKKFF----ASRSGKVMAVRHMIPSNAHPAVFQSIT 289 +A+K L GG L+V+SFHS ED +VK F +S K M S++ + + Sbjct: 270 AAKKLLTPGGRLVVISFHSAEDSIVKHFLKDEATRKSSKTM-------SDSDSITWLPLH 322 Query: 290 KKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDDSFVHL 330 KKVV P+ +++ FN R RSAKLRA ++T + +E HL Sbjct: 323 KKVVSPSDDEIFFNPRCRSAKLRAVVKTNKEVLELCQLTHL 363 >gi|298531025|ref|ZP_07018426.1| S-adenosyl-methyltransferase MraW [Desulfonatronospira thiodismutans ASO3-1] gi|298509048|gb|EFI32953.1| S-adenosyl-methyltransferase MraW [Desulfonatronospira thiodismutans ASO3-1] Length = 319 Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 118/309 (38%), Positives = 180/309 (58%), Gaps = 11/309 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQE 76 H PV+LEKV+ LL PAPG LD T G GG+S + CK +++ +D D A+ E Sbjct: 11 HQPVMLEKVLELLAPAPGGRYLDGTLGLGGHSLAILKACKGECSILGMDMDQEALELVAE 70 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + + + Q F Q+Y+ + G+DG + DLG+SS+Q+D ++GFSF GPL Sbjct: 71 NLEEQQGGLHMVQDAFHNFQEYLQELQWPGLDGALLDLGMSSLQLDKKEKGFSFIHDGPL 130 Query: 134 DMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 DMRM + AS +V A+ L +I+ LGEE A RIA AI++ R+ +P TT +L Sbjct: 131 DMRMGLAQGFPPASSLVQNASFSRLKQIIYELGEEPMAPRIARAIIQAREKSPINTTLEL 190 Query: 192 SSLIQKTVYFSKNN--RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 + ++++ + R HPAT++FQALR+ N E+E L L L+ G L+V+S Sbjct: 191 ARIVEQAYPAQRRRAARNHPATKTFQALRMATNKELESLQDFLEKIAPWLRPGARLVVIS 250 Query: 250 FHSLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK++ + S + R + S +H + +T+K + ++ +++ N RSRS Sbjct: 251 FHSLEDRMVKQYLRRQASDCICPPRSPVCSCSHRKTLEILTRKPLTASEREISRNPRSRS 310 Query: 309 AKLRAGMRT 317 AKLRA R Sbjct: 311 AKLRAAQRV 319 >gi|118581697|ref|YP_902947.1| S-adenosyl-methyltransferase MraW [Pelobacter propionicus DSM 2379] gi|262824775|sp|A1AU69|RSMH_PELPD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|118504407|gb|ABL00890.1| S-adenosyl-methyltransferase MraW [Pelobacter propionicus DSM 2379] Length = 313 Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 127/305 (41%), Positives = 177/305 (58%), Gaps = 12/305 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQ 75 H+ V+ E+V+ L+P PG LD T G GG++ + G +I +DRD A+ Sbjct: 6 HLSVMPEEVLRFLSPRPGGCYLDGTLGGGGHAALVAERCAPGGGTLIGMDRDLEALKAAA 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + + + L F+ + + GVD G V DLGVSS Q+D RGFSFQ+ G Sbjct: 66 ERLSRFGDAVRLLHGNFADIATRLDSLGVDALDGFVLDLGVSSHQLDTARRGFSFQQEGA 125 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM SG +A+D+VN+ +L RI+ GEE+ A RIA IV+ R AP + T L Sbjct: 126 LDMRMDGDSGETAADLVNRLPEHELERIIREYGEERWAKRIASFIVRARSEAPIENTLRL 185 Query: 192 SSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+ + +K R+HPATR+FQALRI VN+E+E L +GL+SA LK GG +V+SF Sbjct: 186 VDIIKGAIPKAKWEERLHPATRTFQALRIAVNHELESLERGLKSAIDRLKPGGRGVVISF 245 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 HSLEDR+VK F + R++ P V + +T + V T+E++ N RSRS Sbjct: 246 HSLEDRIVKHVFREYAAGCTCPRNLPVCVCGRQPRV-RVLTGRPVTATEEELRDNPRSRS 304 Query: 309 AKLRA 313 AKLRA Sbjct: 305 AKLRA 309 >gi|294628857|ref|ZP_06707417.1| methylase MraW [Streptomyces sp. e14] gi|292832190|gb|EFF90539.1| methylase MraW [Streptomyces sp. e14] Length = 318 Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 128/315 (40%), Positives = 188/315 (59%), Gaps = 13/315 (4%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74 HVPV+L++ + LL PA PG V++D T G GG+S + + +I LDRD A+ Sbjct: 6 HVPVMLQRCLDLLAPALERPGAVVVDCTLGLGGHSEALLTRFPEARLIGLDRDKEALRLS 65 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E + + ++ +L A + +L D + G V GV+FDLGVSSMQ+D DRGF++ + Sbjct: 66 GERLAPFGDRATLVHAVYDELPDVLDRLGIVRVQGVLFDLGVSSMQLDEADRGFAYAQDA 125 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM +GISA++V+N +L RIL GEEKQA RI AIV+ R+ PF + Sbjct: 126 PLDMRMDQTTGISAAEVLNTYPPGELVRILRAYGEEKQAKRIVAAIVREREKEPFAHSAR 185 Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L LI+ + +K +PA R+FQALRI VN E+ L + + +A KAL GG + V+S Sbjct: 186 LVELIRDALPQAAKRTGGNPAKRTFQALRIEVNGELAVLERAVPAAVKALDVGGRIAVLS 245 Query: 250 FHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 + SLEDRLVK+ FA+ + ++P P + +T+ +PT+E++A NRR+ Sbjct: 246 YQSLEDRLVKQVFAAGAATTAPPGLPVVPERYQPR-LKLLTRGAELPTEEEIAENRRAAP 304 Query: 309 AKLRAGMRTVERSIE 323 A+LR G+ V +E Sbjct: 305 ARLR-GVERVRADVE 318 >gi|332142432|ref|YP_004428170.1| 16S rRNA m(4)C1402 methyltranserfase [Alteromonas macleodii str. 'Deep ecotype'] gi|263446686|sp|B4RWY7|RSMH_ALTMD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|327552454|gb|AEA99172.1| 16S rRNA m(4)C1402 methyltranserfase [Alteromonas macleodii str. 'Deep ecotype'] Length = 313 Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 127/305 (41%), Positives = 182/305 (59%), Gaps = 17/305 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76 H+ VLL++ I L P + +DATFG GG+S +G +IA DRDP A+ + Sbjct: 9 HISVLLDECIEALAIKPNGIYIDATFGRGGHSAHILDALGEKGRLIAFDRDPQAIKAAER 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 D ++FS+ + F + + + G +DGV+ DLGVSS Q+D +RGFSF + GP Sbjct: 69 FADD--KRFSIIHSPFGDMAEEIEALGLTGKIDGVLMDLGVSSPQLDDAERGFSFLRDGP 126 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G SA+D + A +D+T+++ GEEK RIAHAIV R+ P T L Sbjct: 127 LDMRMDTSRGQSAADWLASAEEQDITQVIKEFGEEKFGKRIAHAIVNTRKDTPITRTAQL 186 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +I + V K+ HPATR+FQ +RI++N E+E+L GL++A + L G L V+SFH Sbjct: 187 AKIIDEAVPV-KDKFKHPATRAFQGIRIYINAELEQLRVGLKAATQVLAKEGRLAVISFH 245 Query: 252 SLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITK---KVVVPTQEDVAFNRRSR 307 SLEDRLVK+F +S GKV V H +P + K K + P+++++A N RSR Sbjct: 246 SLEDRLVKRFIKDQSKGKV--VPHNLPITQAEIDADKVLKALGKAIKPSEQEIANNVRSR 303 Query: 308 SAKLR 312 S+ LR Sbjct: 304 SSVLR 308 >gi|254525262|ref|ZP_05137317.1| S-adenosyl-methyltransferase MraW [Stenotrophomonas sp. SKA14] gi|219722853|gb|EED41378.1| S-adenosyl-methyltransferase MraW [Stenotrophomonas sp. SKA14] Length = 322 Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 122/304 (40%), Positives = 182/304 (59%), Gaps = 12/304 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H+PVL +V+ L LD TFG GG++R ++G ++ +D+DP A++ + Sbjct: 19 HLPVLYTQVLEGLRVIENGRYLDGTFGRGGHARGVLTQLGPEGRLLVMDKDPEAIAVAE- 77 Query: 77 TMRDY--KEQFSLFQATFSQLQDY-VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 RD+ + S+F+ +F+QL + G+DGV+FDLGVSS Q+D +RGFSF K GPL Sbjct: 78 --RDFAPDPRVSIFRGSFAQLLQWDATADGLDGVLFDLGVSSPQLDVAERGFSFGKDGPL 135 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM SG SA+ +N+ +++ +L GEE+Q+ RIA AIV RR+ PF T +L+ Sbjct: 136 DMRMDPDSGESAAQWINRVEDREIADVLWTYGEERQSRRIARAIVARREKQPFTRTAELA 195 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 L+ + K+ +IHPATRSFQA+RI +N E+ +L GL +A + LK GG L ++SFHS Sbjct: 196 ELVASVMPRGKD-KIHPATRSFQAIRIHINRELADLEAGLDAAVERLKPGGRLAIISFHS 254 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK++ +R K +P + + T E++A N R+RSA LR Sbjct: 255 LEDRIVKQYM-NRLAKAPPANRRLPEAEVFVPTLDLIGGAIKATDEELAANPRARSAVLR 313 Query: 313 AGMR 316 + Sbjct: 314 VAQK 317 >gi|182439206|ref|YP_001826925.1| putative S-adenosylmethionine-dependent methyltransferase [Streptomyces griseus subsp. griseus NBRC 13350] gi|262826728|sp|B1W0I2|RSMH_STRGG RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|178467722|dbj|BAG22242.1| putative S-adenosylmethionine-dependent methyltransferase [Streptomyces griseus subsp. griseus NBRC 13350] Length = 321 Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 124/311 (39%), Positives = 184/311 (59%), Gaps = 15/311 (4%) Query: 20 HVPVLLEKVIALLNPA------PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAV 71 HVPV+L++ + LL PA P V++D T G GG+S + + +IALDRD A+ Sbjct: 6 HVPVMLQRCLDLLAPALQDPAHPEPVVVDCTLGLGGHSEALLASFPTARLIALDRDKEAL 65 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQ 128 E + Y ++ +L A + +L + + G V GV+FDLGVSSMQ+D DRGF++ Sbjct: 66 RLSGERLAPYGDRATLVHAVYDELPEVLARLGIPKVQGVLFDLGVSSMQLDEADRGFAYA 125 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + PLDMRM S G+ A++V+N +L RIL GEEKQA RI A+V+ R+ PF Sbjct: 126 QDAPLDMRMDQSTGMGAAEVLNTYPPGELVRILRAYGEEKQAKRIVSAVVREREKEPFSN 185 Query: 188 TQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 + L LI+ + +K +PA R+FQALRI VN E+ L + + +A +L GG + Sbjct: 186 SARLVELIRDALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVDSLDVGGRIA 245 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V+S+HSLEDRLVK+ FA+ + ++P P + Q +T+ +PT+++VA NRR Sbjct: 246 VLSYHSLEDRLVKQVFAAGAANTAPPGLPVVPERYQPRLKQ-LTRGAELPTEQEVAENRR 304 Query: 306 SRSAKLRAGMR 316 + A+LR R Sbjct: 305 AAPARLRGAQR 315 >gi|239996439|ref|ZP_04716963.1| S-adenosyl-methyltransferase MraW [Alteromonas macleodii ATCC 27126] Length = 313 Score = 210 bits (535), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 125/304 (41%), Positives = 182/304 (59%), Gaps = 15/304 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76 H+ VLL++ I L P + +DATFG GG+S +G + +IA DRDP A+ + Sbjct: 9 HISVLLDECIEALAIKPNGIYIDATFGRGGHSAHILDALGEHGRLIAFDRDPQAIKAAER 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 D ++FS+ + F + + + G +DGV+ DLGVSS Q+D +RGFSF + GP Sbjct: 69 FADD--KRFSIIHSPFGDMAEEIEALGLTGKIDGVLMDLGVSSPQLDDAERGFSFLRDGP 126 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G SA+D + A +D+T+++ GEEK RIAHAIV R+ P T L Sbjct: 127 LDMRMDTSRGQSAADWLANAEEQDITQVIKEFGEEKFGKRIAHAIVNTRKETPITRTAQL 186 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +I + V K+ HPATR+FQ +RI++N E+E+L GL++A + L G L V+SFH Sbjct: 187 AKIIDEAVPV-KDKFKHPATRAFQGIRIYINAELEQLRVGLKAATQVLAKEGRLAVISFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK---KVVVPTQEDVAFNRRSRS 308 SLEDRLVK+F +S K +V H +P + K K + P+++++A N RSRS Sbjct: 246 SLEDRLVKRFIKDQS-KGKSVPHNLPITQAEIDADKVLKALGKAIKPSEQEIANNVRSRS 304 Query: 309 AKLR 312 + LR Sbjct: 305 SVLR 308 >gi|254391587|ref|ZP_05006786.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Streptomyces clavuligerus ATCC 27064] gi|294812140|ref|ZP_06770783.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Streptomyces clavuligerus ATCC 27064] gi|197705273|gb|EDY51085.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Streptomyces clavuligerus ATCC 27064] gi|294324739|gb|EFG06382.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Streptomyces clavuligerus ATCC 27064] Length = 318 Score = 210 bits (535), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 130/311 (41%), Positives = 185/311 (59%), Gaps = 12/311 (3%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74 HVPV+L++ + LL PA PG V++D T G GG+S + G +IALDRDP A+ Sbjct: 6 HVPVMLQRCLDLLAPALESPGAVVVDCTLGLGGHSEALLSRFPGVRLIALDRDPEALRLS 65 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E + Y E+ +L A + +L + GV GV+FDLGVSSMQ+D DRGF++ + Sbjct: 66 AERLAPYGERATLVHAVYDELPAVLARLGVPRVQGVLFDLGVSSMQLDEADRGFAYAQDA 125 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM +G+SA++V+N +L RIL GEEKQA RI AIV+ R + PF T+ Sbjct: 126 PLDMRMDQTTGMSAAEVLNTYPPGELVRILRAYGEEKQAKRIVSAIVRERVNEPFSTSAR 185 Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L LI+ + +K +PA R+FQALRI VN E+ L + + +A AL G + V+S Sbjct: 186 LVELIRDALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAVPAAVAALAVEGRIAVLS 245 Query: 250 FHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 +HSLEDRLVK+ FA+ + ++P P + +T+ +PT ++VA NRR+ Sbjct: 246 YHSLEDRLVKQVFAAGAATTAPPGLPVVPEEYQPR-LRLLTRGAELPTDDEVAENRRAAP 304 Query: 309 AKLRAGMRTVE 319 A+LR R E Sbjct: 305 ARLRGAQRIRE 315 >gi|154706930|ref|YP_001425301.1| S-adenosyl-methyltransferase MraW [Coxiella burnetii Dugway 5J108-111] gi|263446157|sp|A9KET2|RSMH_COXBN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|154356216|gb|ABS77678.1| S-adenosyl-methyltransferase [Coxiella burnetii Dugway 5J108-111] Length = 307 Score = 210 bits (535), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 124/307 (40%), Positives = 185/307 (60%), Gaps = 23/307 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQE 76 H PVL ++V+ L P + +D TFG GG+S ++G N ++A+D+DP AV+ + Sbjct: 4 HKPVLFDEVMEGLAIRPDGIYVDGTFGRGGHSFGILQRLGPNGRLMAMDKDPDAVAVANK 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + +FS+ TF+ LQ V D+G V+G++ D+GVSS Q++ RGFSF K GP Sbjct: 64 ALFE-DARFSIVHETFANLQKAVRDRGWEGKVNGILLDIGVSSPQLEDAKRGFSFSKDGP 122 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ + A+ +NQA ++D+ R+L GEE+ A RIA AIV R+ P TQ+L Sbjct: 123 LDMRMNPKQSMDAASWINQAAMEDIRRVLWNYGEERFAKRIAQAIVNAREEKPITRTQEL 182 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 S ++ K Y + + HPATR+FQA+RIF+N E++EL + L + L GG L V+SFH Sbjct: 183 SDIVIKA-YPQRKIKKHPATRTFQAIRIFINRELDELRECLPQCLETLAVGGRLCVISFH 241 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKK------VVVPTQEDVAFNRR 305 SLEDRLVK+F S R +P P + + I + ++ PT+ ++ N R Sbjct: 242 SLEDRLVKRFIQKES------RDHLPREI-PILAKDIKHRLKPLGSLIRPTEAEIKKNPR 294 Query: 306 SRSAKLR 312 +RSA+LR Sbjct: 295 ARSARLR 301 >gi|29653474|ref|NP_819166.1| S-adenosyl-methyltransferase [Coxiella burnetii RSA 493] gi|153207124|ref|ZP_01945903.1| S-adenosyl-methyltransferase MraW [Coxiella burnetii 'MSU Goat Q177'] gi|161830127|ref|YP_001596084.1| S-adenosyl-methyltransferase MraW [Coxiella burnetii RSA 331] gi|165918373|ref|ZP_02218459.1| S-adenosyl-methyltransferase MraW [Coxiella burnetii RSA 334] gi|212219401|ref|YP_002306188.1| S-adenosyl-methyltransferase MraW [Coxiella burnetii CbuK_Q154] gi|42559465|sp|Q83F35|RSMH_COXBU RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446160|sp|A9NA25|RSMH_COXBR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263447414|sp|B6J5L7|RSMH_COXB1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|29540736|gb|AAO89680.1| S-adenosyl-methyltransferase [Coxiella burnetii RSA 493] gi|120576785|gb|EAX33409.1| S-adenosyl-methyltransferase MraW [Coxiella burnetii 'MSU Goat Q177'] gi|161761994|gb|ABX77636.1| S-adenosyl-methyltransferase MraW [Coxiella burnetii RSA 331] gi|165917879|gb|EDR36483.1| S-adenosyl-methyltransferase MraW [Coxiella burnetii RSA 334] gi|212013663|gb|ACJ21043.1| S-adenosyl-methyltransferase [Coxiella burnetii CbuK_Q154] Length = 307 Score = 210 bits (535), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 124/307 (40%), Positives = 185/307 (60%), Gaps = 23/307 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQE 76 H PVL ++V+ L P + +D TFG GG+S ++G N ++A+D+DP AV+ + Sbjct: 4 HKPVLFDEVMEGLAIRPDGIYVDGTFGRGGHSFGILQRLGPNGRLMAMDKDPDAVAVANK 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + +FS+ TF+ LQ V D+G V+G++ D+GVSS Q++ RGFSF K GP Sbjct: 64 ALFE-DARFSIVHETFANLQKAVRDRGWEGKVNGILLDIGVSSPQLEDAKRGFSFSKDGP 122 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ + A+ +NQA ++D+ R+L GEE+ A RIA AIV R+ P TQ+L Sbjct: 123 LDMRMNPKQSMDAASWINQAAMEDIRRVLWNYGEERFAKRIAQAIVNAREEKPITRTQEL 182 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 S ++ K Y + + HPATR+FQA+RIF+N E++EL + L + L GG L V+SFH Sbjct: 183 SDIVIKA-YPQREIKKHPATRTFQAIRIFINRELDELRECLPQCLETLAVGGRLCVISFH 241 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKK------VVVPTQEDVAFNRR 305 SLEDRLVK+F S R +P P + + I + ++ PT+ ++ N R Sbjct: 242 SLEDRLVKRFIQKES------RDHLPREI-PILAKDIKHRLKPLGSLIRPTEAEIKKNPR 294 Query: 306 SRSAKLR 312 +RSA+LR Sbjct: 295 ARSARLR 301 >gi|206580699|ref|YP_002240446.1| S-adenosyl-methyltransferase MraW [Klebsiella pneumoniae 342] gi|288937146|ref|YP_003441205.1| S-adenosyl-methyltransferase MraW [Klebsiella variicola At-22] gi|290512569|ref|ZP_06551935.1| S-adenosyl-methyltransferase MraW [Klebsiella sp. 1_1_55] gi|263456192|sp|B5Y1V5|RSMH_KLEP3 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|206569757|gb|ACI11533.1| S-adenosyl-methyltransferase MraW [Klebsiella pneumoniae 342] gi|288891855|gb|ADC60173.1| S-adenosyl-methyltransferase MraW [Klebsiella variicola At-22] gi|289774910|gb|EFD82912.1| S-adenosyl-methyltransferase MraW [Klebsiella sp. 1_1_55] Length = 313 Score = 210 bits (535), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 126/311 (40%), Positives = 191/311 (61%), Gaps = 19/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + LN P + +D TFG GG+SR ++G+ ++A+DRDP A++ + Sbjct: 7 HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSRLGAEGRLLAIDRDPQAIAVAK- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 T+ D + FS+ FSQL DYV ++ +DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 66 TIDDPR--FSIVHGPFSQLADYVDERNLTGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G SA++ + A D+ ++ GEE+ RIA AIV+R + P T++L Sbjct: 124 LDMRMDPTRGQSAAEWLQTAEEADIAWVIKTFGEERFGKRIARAIVERNRIEPMTRTKEL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +I + K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L ++SFH Sbjct: 184 AEVIAAAMPV-KDKHKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSIISFH 242 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306 SLEDR+VK+F SR +V A M + +++ K ++P +E+VA N R+ Sbjct: 243 SLEDRIVKRFMREQSRGPQVPAGIPMTEAQLKKLGGRELRALGK--LMPGEEEVAENPRA 300 Query: 307 RSAKLRAGMRT 317 RS+ LR RT Sbjct: 301 RSSVLRIAERT 311 >gi|254456040|ref|ZP_05069469.1| S-adenosyl-methyltransferase MraW [Candidatus Pelagibacter sp. HTCC7211] gi|207083042|gb|EDZ60468.1| S-adenosyl-methyltransferase MraW [Candidatus Pelagibacter sp. HTCC7211] Length = 336 Score = 210 bits (535), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 119/310 (38%), Positives = 180/310 (58%), Gaps = 4/310 (1%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRD 67 M + I + H PVLL+++I++ +P G +D TFG GGYS+ +++IALDRD Sbjct: 1 MEATIVSELQKHYPVLLKEIISVFSPQHGGTFIDCTFGQGGYSKKILDFENTSIIALDRD 60 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDY-VPDKGVDGVVFDLGVSSMQIDCGDRGFS 126 + + +++++F FSQL + + ++ + GV+FDLG S QI +G S Sbjct: 61 VESEKIANKFKENFEDRFIFKNIKFSQLNNLKLKNENIRGVIFDLGYSYTQIKDPLKGLS 120 Query: 127 FQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 F+ G L+M++ + SA D +N+ + K+L +I G+EK+ IA I+K R Sbjct: 121 FEADGKLNMQLGLNSYSAEDAINKLDEKELEKIFKFFGDEKEGKYIARNIIKERLKNKID 180 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T + L +I K+ KN ++H AT+ FQALRIFVN EI EL GL +A K LK GG+L Sbjct: 181 T-RALVEIIDKSKK-RKNFKVHNATKVFQALRIFVNKEISELIYGLINATKVLKKGGILG 238 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 VV+FHSLED++VK FF S S R+ + +F I KK ++P+ E+V+ N S Sbjct: 239 VVTFHSLEDKIVKYFFKSLSENKSISRYSPVTEQSETLFNLIQKKPILPSDEEVSENPPS 298 Query: 307 RSAKLRAGMR 316 RSAK R ++ Sbjct: 299 RSAKFRYVIK 308 >gi|320334677|ref|YP_004171388.1| ribosomal RNA small subunit methyltransferase H [Deinococcus maricopensis DSM 21211] gi|319755966|gb|ADV67723.1| Ribosomal RNA small subunit methyltransferase H [Deinococcus maricopensis DSM 21211] Length = 295 Score = 210 bits (534), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 117/303 (38%), Positives = 165/303 (54%), Gaps = 23/303 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+PVL +V+ L P PG+V +D T G G++R G+ V +D+DP+A+ + Sbjct: 9 HIPVLATEVLDALQPQPGQVFVDGTLGGAGHTRLLLAAGATVYGIDQDPYALERNRAAGL 68 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + + + F ++ + D GVD GV+ D+GVSS Q+D RGFS+ PLDMR Sbjct: 69 N---GLHVLEGNFRDMRALLNDAGVDHVDGVLLDIGVSSFQLDDAARGFSYHTEAPLDMR 125 Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 MS G SA+D+VN DL I+ GEE+ + RIA IV R P TT L+ +I+ Sbjct: 126 MSQGGDSAADLVNDMEEADLAAIIFEYGEERHSRRIARGIVNARDKGPISTTTQLADIIK 185 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 + IHPA R+FQALRI VN+E+ L GL+ A L+ GG L V+SFHSLEDR Sbjct: 186 RAYPGGHARGIHPARRTFQALRIAVNDELGALRDGLQGASDLLRPGGRLAVISFHSLEDR 245 Query: 257 LVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 +VK+F A P +TK+ + +++ A N R+RSAKLR + Sbjct: 246 IVKRFLL----------------ADP-TLDPLTKRPIEAAEDEQARNPRARSAKLRGARK 288 Query: 317 TVE 319 E Sbjct: 289 RAE 291 >gi|320011279|gb|ADW06129.1| S-adenosyl-methyltransferase MraW [Streptomyces flavogriseus ATCC 33331] Length = 321 Score = 210 bits (534), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 123/314 (39%), Positives = 185/314 (58%), Gaps = 15/314 (4%) Query: 20 HVPVLLEKVIALLNPA------PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAV 71 HVPV+L++ + LL PA V++D T G GG+S + + ++ALDRD A+ Sbjct: 6 HVPVMLQRCLDLLAPALEATGPQPPVVVDCTLGLGGHSEALLAAFPAARLVALDRDKEAL 65 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQ 128 E + Y ++ +L A + +L + + G V GV+FDLGVSSMQ+D DRGF++ Sbjct: 66 RLSGERLAPYGDRATLVHAVYDELPEVLDRLGIPKVQGVLFDLGVSSMQLDEADRGFAYA 125 Query: 129 KSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + PLDMRM +GI A++V+N +L RIL GEEKQA RI A+V+ R+ PF Sbjct: 126 QDAPLDMRMDQTTGIGAAEVLNTYPPGELVRILRAYGEEKQAKRIVSAVVREREKEPFSN 185 Query: 188 TQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 + L LI+ ++ +K +PA R+FQALRI VN E+ L + + +A ++L GG + Sbjct: 186 SARLVELIRDSLPQAAKRTGGNPAKRTFQALRIEVNGELTVLERAVPAAVRSLAVGGRIA 245 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V+S+HSLEDRLVK+ FA+ + ++P P + +T+ +PT+E+VA NRR Sbjct: 246 VLSYHSLEDRLVKQVFAAGAANTAPPGLPVVPERYQPR-LKLLTRGAELPTEEEVAENRR 304 Query: 306 SRSAKLRAGMRTVE 319 + A+LR R E Sbjct: 305 AAPARLRGAQRIRE 318 >gi|225175505|ref|ZP_03729499.1| S-adenosyl-methyltransferase MraW [Dethiobacter alkaliphilus AHT 1] gi|225168834|gb|EEG77634.1| S-adenosyl-methyltransferase MraW [Dethiobacter alkaliphilus AHT 1] Length = 320 Score = 210 bits (534), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 124/310 (40%), Positives = 188/310 (60%), Gaps = 12/310 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H PVLL++ ++ L P PG+V +D T G GG+SR+ + +IA+D+D A++ +E Sbjct: 6 HEPVLLQETLSALAPRPGEVFVDGTVGGGGHSRAILEKITPHGRLIAIDQDKNALAAAKE 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 T+ ++E + F+ LQD + +GV DG++ D+GVSS Q+D G+RGFSF PL Sbjct: 66 TLAPWREHVTFVHNNFANLQDVLESEGVQKVDGILLDIGVSSHQLDEGERGFSFNTEAPL 125 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQTTQDL 191 DMRM+ G++A+ +VN+ + ++LTRIL GEE A RIA +V RR++ P +TT L Sbjct: 126 DMRMNRDKGVTAAQLVNELDAEELTRILRDYGEELWARRIAEFMVARRKNHGPIETTGQL 185 Query: 192 SSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+ + R HPA R+FQALRI VN+E+ L + + LK GG L V++F Sbjct: 186 VDVIKAAIPARARRRGPHPARRTFQALRIAVNDELGVLERAVNDGIDCLKTGGRLAVITF 245 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNA--HPAVFQSITKKVVVPTQEDVAFNRRSRS 308 HSLEDR+VKK F R+ + P A + A + +T K V ++++ N R+RS Sbjct: 246 HSLEDRMVKKIFQHRAAGCQCPPGL-PQCACGNQAHVKILTGKPVQAKEDELERNPRARS 304 Query: 309 AKLRAGMRTV 318 AKLRA ++ + Sbjct: 305 AKLRAVIKVL 314 >gi|261338924|ref|ZP_05966782.1| hypothetical protein ENTCAN_05122 [Enterobacter cancerogenus ATCC 35316] gi|288318749|gb|EFC57687.1| S-adenosyl-methyltransferase MraW [Enterobacter cancerogenus ATCC 35316] Length = 313 Score = 210 bits (534), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 128/311 (41%), Positives = 190/311 (61%), Gaps = 19/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + LN P + +D TFG GG+SR ++G+ ++A+DRDP A++ Q Sbjct: 7 HTTVLLDEAVNGLNIRPDGIYVDGTFGRGGHSRLILSQLGAEGRLLAIDRDPQAIAVAQ- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 T+ D + FS+ FS L DYV ++G +DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 66 TIDDPR--FSIVHGPFSALADYVAERGLTGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G SA++ + A+ D+ ++ GEE+ RIA AIV+R + P T++L Sbjct: 124 LDMRMDPTRGQSAAEWLQTADEADIAWVIKTFGEERFGKRIARAIVERNRIEPMTRTKEL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +I K+ HPATR+FQA+RI+VN+E+EE+ L+S+ L GG L V+SFH Sbjct: 184 AEVIAAATPV-KDKHKHPATRTFQAVRIWVNSELEEIELALKSSLDVLAPGGRLSVISFH 242 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIP---SNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 SLEDR+VK+F SR +V A M S +++ K ++P +E+VA N R+ Sbjct: 243 SLEDRIVKRFMREQSRGPQVPAGLPMTEEQLSKLGGRQLRALGK--LMPGEEEVAENPRA 300 Query: 307 RSAKLRAGMRT 317 RS+ LR RT Sbjct: 301 RSSVLRVAERT 311 >gi|88608489|ref|YP_506785.1| S-adenosyl-methyltransferase MraW [Neorickettsia sennetsu str. Miyayama] gi|123491328|sp|Q2GCL1|RSMH_NEOSM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|88600658|gb|ABD46126.1| S-adenosyl-methyltransferase MraW [Neorickettsia sennetsu str. Miyayama] Length = 296 Score = 210 bits (534), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 121/295 (41%), Positives = 170/295 (57%), Gaps = 18/295 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSNVIALDRDPFAVSCGQETM 78 H PVLL + + L P G V +DATFGAGGY+R+ + V A+DRD Q Sbjct: 13 HKPVLLSEALKFLAPKNGGVYVDATFGAGGYTRAILSSVDCFVYAIDRDETVRRFFQVIE 72 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138 D+ ++ + F + + + VDG+VFDLGVS+MQ+ DRGFSF GPLDMRM Sbjct: 73 NDFPKRTNFINGNFVDIGSLLGEVKVDGIVFDLGVSTMQLKVADRGFSFLHEGPLDMRMD 132 Query: 139 CSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK 197 S + +A VVN + I+ GEE+ + +IAHAIV R+ TT L+ ++ + Sbjct: 133 RSTLLTAETVVNSYTEVKIASIIYQFGEERMSRKIAHAIVNARRKKRITTTSSLAEIV-R 191 Query: 198 TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRL 257 + + + +I PAT++FQALRIF+N+E+ L GLR+A LK G +VVSFHSLEDR+ Sbjct: 192 SCFPKRYYKIDPATKTFQALRIFINDELGALECGLRTALTMLKVGSRAVVVSFHSLEDRI 251 Query: 258 VKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 VK F S H F +TKK+VVP++++V N SRSA++R Sbjct: 252 VKHLFRS---------------VHGNGFNLLTKKIVVPSRDEVRENPSSRSARMR 291 >gi|152968667|ref|YP_001333776.1| S-adenosyl-methyltransferase MraW [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238893062|ref|YP_002917796.1| S-adenosyl-methyltransferase MraW [Klebsiella pneumoniae NTUH-K2044] gi|262044874|ref|ZP_06017917.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330012015|ref|ZP_08307232.1| S-adenosyl-methyltransferase MraW [Klebsiella sp. MS 92-3] gi|263456196|sp|A6T4M5|RSMH_KLEP7 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|150953516|gb|ABR75546.1| S-adenosyl-methyltransferase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238545378|dbj|BAH61729.1| S-adenosyl-methyltransferase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259037843|gb|EEW39071.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328534004|gb|EGF60656.1| S-adenosyl-methyltransferase MraW [Klebsiella sp. MS 92-3] Length = 313 Score = 209 bits (533), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 126/311 (40%), Positives = 191/311 (61%), Gaps = 19/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + LN P + +D TFG GG+SR ++G+ ++A+DRDP A++ Q Sbjct: 7 HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSRLGAEGRLLAIDRDPQAIAVAQ- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 T+ D + FS+ FSQL +YV ++ +DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 66 TIDDPR--FSIVHGPFSQLAEYVGERNLTGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G SA++ + A D+ ++ GEE+ RIA AIV+R + P T++L Sbjct: 124 LDMRMDPTRGQSAAEWLQTAEEDDIAWVIKTFGEERFGKRIARAIVERNRIQPMTRTKEL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +I + K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L ++SFH Sbjct: 184 AEVIAAAMPV-KDKHKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSIISFH 242 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306 SLEDR+VK+F SR +V A M + +++ K ++P +E+VA N R+ Sbjct: 243 SLEDRIVKRFMREQSRGPQVPAGIPMTEAQLKKLGGRELRALGK--LMPGEEEVAENPRA 300 Query: 307 RSAKLRAGMRT 317 RS+ LR RT Sbjct: 301 RSSVLRIAERT 311 >gi|315125595|ref|YP_004067598.1| S-adenosyl-methyltransferase MraW [Pseudoalteromonas sp. SM9913] gi|315014108|gb|ADT67446.1| S-adenosyl-methyltransferase MraW [Pseudoalteromonas sp. SM9913] Length = 312 Score = 209 bits (533), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 125/310 (40%), Positives = 191/310 (61%), Gaps = 17/310 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYS-RSFCKMGSN--VIALDRDPFAVSCGQ 75 +HV VL+++ I L P + +D TFG GG+S + ++G + + A+D+DP A+ + Sbjct: 6 EHVSVLMDETIDALAIKPDGIYMDGTFGRGGHSGQILARLGESGRLQAIDQDPQAIKSAE 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + D + FS+ + FS+L + VDG++ D+GVSS Q+D RGFSF K G Sbjct: 66 KFADDPR--FSIAHSRFSKLYEVAEQNDLIGQVDGILLDIGVSSPQLDDAARGFSFMKDG 123 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S G SA+ + +A + D+T ++ LGEEK RIAH I++ R+ P TT+ Sbjct: 124 PLDMRMDPSTGRSAAQWLAEAELDDITHVIKKLGEEKFGKRIAHKILEVREHTPITTTKQ 183 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ L+ + V K+ HPATR+FQA+RI++N+E+EE+ L++A K LK GG L+V+SF Sbjct: 184 LADLVDEAVPV-KDKFKHPATRTFQAIRIYINSELEEIQTALQAAIKVLKPGGRLVVISF 242 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV----VPTQEDVAFNRRS 306 HSLEDR+VK+F +S R + ++A + +++T K V P+ ++VA N RS Sbjct: 243 HSLEDRIVKQFIKKQSKGEAIPRGLPLTDAQ--INKNLTLKAVGKAIKPSADEVARNPRS 300 Query: 307 RSAKLRAGMR 316 RS+ LR R Sbjct: 301 RSSVLRIAQR 310 >gi|114045888|ref|YP_736438.1| S-adenosyl-methyltransferase MraW [Shewanella sp. MR-7] gi|123030979|sp|Q0HZS4|RSMH_SHESR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|113887330|gb|ABI41381.1| S-adenosyl-methyltransferase MraW [Shewanella sp. MR-7] Length = 313 Score = 209 bits (532), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 121/308 (39%), Positives = 179/308 (58%), Gaps = 15/308 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQE 76 H+ VLLE+ + LN + +D TFG GG+SR ++G N +IA+DRDP A+ ++ Sbjct: 7 HLSVLLEETVGGLNIKDDGIYIDGTFGRGGHSRQILQRLGENGRLIAIDRDPQAIEAAKQ 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 D + F + F QL DYV + G +DGV+ DLGVSS Q+D +RGFSF + GP Sbjct: 67 FADDPR--FQIVHGGFGQLADYVEELGLVGKIDGVLLDLGVSSPQLDDAERGFSFLRDGP 124 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G +A+ + +A ++D+ + GEEK A IA I R PF T+DL Sbjct: 125 LDMRMDNSQGETAAQWLARAEIEDMAWVFKTYGEEKNARHIARCIAADRDKTPFLRTKDL 184 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI + + N+ HPATR FQA+RI++N+E++++ Q L A L G L ++SFH Sbjct: 185 ADLIARITKNKERNK-HPATRVFQAIRIYINSELDQIDQALEGALTVLAPQGRLSIISFH 243 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP---SNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SLEDR+VK+F R + +V H +P + + K ++P+ E++ N R+RS Sbjct: 244 SLEDRIVKRFI-RRHSQGESVPHGLPITEDQINKSRKLRAIGKAIMPSDEEIERNARARS 302 Query: 309 AKLRAGMR 316 + LR R Sbjct: 303 SVLRIAER 310 >gi|121611471|ref|YP_999278.1| S-adenosyl-methyltransferase MraW [Verminephrobacter eiseniae EF01-2] gi|263504490|sp|A1WRK3|RSMH_VEREI RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|121556111|gb|ABM60260.1| S-adenosyl-methyltransferase MraW [Verminephrobacter eiseniae EF01-2] Length = 334 Score = 209 bits (532), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 134/314 (42%), Positives = 187/314 (59%), Gaps = 14/314 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALD 65 MSSA HT P + + ++A PAP +DATFG GG++R C++G ++A D Sbjct: 1 MSSAPCHTTVLREPAV-DALLARAGPAPAGTWVDATFGRGGHTRLILCRLGPQGRLVAFD 59 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125 +DP A++ E MR +FS+ F QL +P + GV+ DLGVSS QID +RGF Sbjct: 60 KDPEAIA---EAMRITDARFSIRHQGFGQL-GQLPAGSLAGVLMDLGVSSPQIDSPERGF 115 Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-A 183 SF+ GPLDMRM + G+SA+D + A+ + ++L GEE+ A IA AIV RRQ+ Sbjct: 116 SFRFDGPLDMRMDTTRGLSAADWLATADAGQIAQVLRDYGEERFAGLIAKAIVARRQARG 175 Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 P T +L+ L+ V + + +PATR+FQALRIF+N E+EEL Q L ++ L+ GG Sbjct: 176 PLARTAELADLVAGAVKTREPGQ-NPATRTFQALRIFINAELEELQQALAASLLVLQPGG 234 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 L+V+SFHSLEDR+VK+F A S + R +P A P Q + V P +VA N Sbjct: 235 RLVVLSFHSLEDRIVKQFIARHSRQPFDRR--VPFAA-PQAMQLLALARVRPDAAEVAAN 291 Query: 304 RRSRSAKLRAGMRT 317 R+RSA +R RT Sbjct: 292 PRARSAIMRVAERT 305 >gi|295098586|emb|CBK87676.1| S-adenosyl-methyltransferase MraW [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 313 Score = 209 bits (532), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 126/311 (40%), Positives = 189/311 (60%), Gaps = 19/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + LN P + +D TFG GG+SR ++G+ ++A+DRDP A++ Q Sbjct: 7 HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGAEGRLLAIDRDPQAIAVAQ- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 T+ D + FS+ FS L DYV ++G +DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 66 TIDDPR--FSIVHGPFSALADYVAERGLTGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G SA++ + A+ D+ ++ GEE+ RIA AIV+R + P T++L Sbjct: 124 LDMRMDPTRGQSAAEWLQTADEADIAWVIKTFGEERFGKRIARAIVERNRVEPMTRTKEL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +I K+ HPATR+FQA+RI+VN+E+EE+ L+S+ L GG L ++SFH Sbjct: 184 AEVIAAATPV-KDKHKHPATRTFQAVRIWVNSELEEIELALKSSLDVLAPGGRLSIISFH 242 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306 SLEDR+VK+F SR +V A M +++ K ++P +E+VA N R+ Sbjct: 243 SLEDRIVKRFMREQSRGPQVPAGLPMTEEQLRKLGGRQLRALGK--LMPGEEEVAENPRA 300 Query: 307 RSAKLRAGMRT 317 RS+ LR RT Sbjct: 301 RSSVLRIAERT 311 >gi|283835144|ref|ZP_06354885.1| S-adenosyl-methyltransferase MraW [Citrobacter youngae ATCC 29220] gi|291069444|gb|EFE07553.1| S-adenosyl-methyltransferase MraW [Citrobacter youngae ATCC 29220] Length = 313 Score = 209 bits (532), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 126/311 (40%), Positives = 191/311 (61%), Gaps = 19/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + LN P + +D TFG GG+SR ++G ++A+DRDP A++ + Sbjct: 7 HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 T+ D + FS+ FS L DYV ++G +DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 66 TITDPR--FSIVHGPFSALADYVAERGLTGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G SA++ + A+ D+ ++ GEE+ RIA AIV+R + P T++L Sbjct: 124 LDMRMDPTRGQSAAEWLQTADEADIAWVIKTFGEERFGKRIARAIVERNRIEPMTRTKEL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +I + K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L ++SFH Sbjct: 184 AEVIAAAMPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSIISFH 242 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306 SLEDR+VK+F SR +V A M + +++ K ++P +E+VA N R+ Sbjct: 243 SLEDRIVKRFMREQSRGPQVPAGIPMTEAQIKKLGGRELRALGK--MMPGEEEVAENPRA 300 Query: 307 RSAKLRAGMRT 317 RS+ LR RT Sbjct: 301 RSSVLRIAERT 311 >gi|283783869|ref|YP_003363734.1| S-adenosyl-L-methionine-dependent methyltransferase [Citrobacter rodentium ICC168] gi|282947323|emb|CBG86868.1| S-adenosyl-L-methionine-dependent methyltransferase [Citrobacter rodentium ICC168] Length = 313 Score = 209 bits (532), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 127/311 (40%), Positives = 189/311 (60%), Gaps = 19/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + LN P + +D TFG GG+SR ++G ++A+DRDP A++ Q Sbjct: 7 HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAQ- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 T+ D + FS+ FS L +YV ++ +DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 66 TINDPR--FSIIHGPFSALAEYVAERNLTGRIDGILLDLGVSSPQLDDAERGFSFMRDGP 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G SA++ + A D+ +L GEE+ A RIA AIV+R + P T++L Sbjct: 124 LDMRMDPTRGQSAAEWLQSAEEADIAWVLKTFGEERFAKRIARAIVERNREQPMTRTKEL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L ++SFH Sbjct: 184 AEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSIISFH 242 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIP---SNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 SLEDR+VK+F SR KV A M S +++ K ++P +++VA N R+ Sbjct: 243 SLEDRIVKRFMREQSRGPKVPAGIPMTEEQLSKLGGRELRALGK--LMPGEKEVAENPRA 300 Query: 307 RSAKLRAGMRT 317 RS+ LR RT Sbjct: 301 RSSVLRIAERT 311 >gi|320179644|gb|EFW54593.1| rRNA small subunit methyltransferase H [Shigella boydii ATCC 9905] Length = 313 Score = 209 bits (532), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 126/311 (40%), Positives = 189/311 (60%), Gaps = 19/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + LN PG + +D TFG GG+SR ++G ++A+DRDP A++ + Sbjct: 7 HTTVLLDEAVNGLNIRPGGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 T+ D + FS+ FS L +YV ++ +DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 66 TIDDPR--FSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G SA++ + A D+ +L GEE+ A RIA AIV+R + P T++L Sbjct: 124 LDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKEL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L ++SFH Sbjct: 184 AEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISFH 242 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306 SLEDR+VK+F SR +V A M +++ K ++P +E+VA N R+ Sbjct: 243 SLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGK--LMPGEEEVAENPRA 300 Query: 307 RSAKLRAGMRT 317 RS+ LR RT Sbjct: 301 RSSVLRIAERT 311 >gi|261823024|ref|YP_003261130.1| S-adenosyl-methyltransferase MraW [Pectobacterium wasabiae WPP163] gi|261607037|gb|ACX89523.1| S-adenosyl-methyltransferase MraW [Pectobacterium wasabiae WPP163] Length = 314 Score = 209 bits (532), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 125/309 (40%), Positives = 188/309 (60%), Gaps = 16/309 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + LN G +D TFG GG+SR ++G ++A+DRDP A+ + Sbjct: 7 HTSVLLDEAVNGLNIRSGGTYIDGTFGRGGHSRLILSQLGPEGRLLAIDRDPQAIEAAK- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + D + FS+ FS + DYV ++G +DGV+ DLGVSS Q+D +RGFSF + GP Sbjct: 66 AIDDPR--FSIIHGPFSAMADYVAERGLTGQIDGVLLDLGVSSPQLDDPERGFSFMRDGP 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G+SA++ + +A D+ +L GEE+ A RIA AIV+R ++ P T++L Sbjct: 124 LDMRMDPTRGLSAAEWLMKAEADDIVWVLKTFGEERFAKRIARAIVERNRTEPMTRTKEL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI + ++ HPATRSFQA+RI++N+E+EE+ + L A L G L V+SFH Sbjct: 184 AELIAAASPVREKHK-HPATRSFQAIRIYINSELEEIERALEGALSVLAPQGRLSVISFH 242 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITK--KVVVPTQEDVAFNRRSR 307 SLEDR+VK+F SR +V A + + Q++ K ++P++E+VA N R+R Sbjct: 243 SLEDRIVKRFIRHQSRGPQVPAGLPLTEAQLRSQGGQTLKPVGKKLMPSEEEVAENPRAR 302 Query: 308 SAKLRAGMR 316 S+ LR R Sbjct: 303 SSVLRFAER 311 >gi|237729380|ref|ZP_04559861.1| S-adenosyl-methyltransferase MraW [Citrobacter sp. 30_2] gi|226909109|gb|EEH95027.1| S-adenosyl-methyltransferase MraW [Citrobacter sp. 30_2] Length = 313 Score = 209 bits (532), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 126/311 (40%), Positives = 191/311 (61%), Gaps = 19/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + LN P + +D TFG GG+SR ++G ++A+DRDP A++ + Sbjct: 7 HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 T+ D + FS+ FS L DYV ++G +DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 66 TITDPR--FSIVHGPFSALADYVAERGLTGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G SA++ + A+ D+ ++ GEE+ RIA AIV+R + P T++L Sbjct: 124 LDMRMDPTRGQSAAEWLQTADEADIAWVIKTFGEERFGKRIARAIVERNRIEPMTRTKEL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +I + K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L ++SFH Sbjct: 184 AEVIAAAMPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSIISFH 242 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306 SLEDR+VK+F SR +V A M + +++ K ++P +E+VA N R+ Sbjct: 243 SLEDRIVKRFMREQSRGPQVPAGIPMTEAQIKKLGGRELRALGK--MMPGEEEVAENPRA 300 Query: 307 RSAKLRAGMRT 317 RS+ LR RT Sbjct: 301 RSSVLRIAERT 311 >gi|291530304|emb|CBK95889.1| S-adenosyl-methyltransferase MraW [Eubacterium siraeum 70/3] Length = 308 Score = 209 bits (532), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 117/299 (39%), Positives = 175/299 (58%), Gaps = 8/299 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77 H+PVLL + I L+ P + +D T G G+S K +I DRDP AV +E Sbjct: 7 HIPVLLSETIESLDIKPDGIYVDCTTGFAGHSSEIAKRLTTGRLIGFDRDPDAVKAAEEK 66 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++DY +L FS + + + GV DGV+ DLGVSS Q+D +RGFS+ + PLD Sbjct: 67 LKDY--PHTLINRKFSTFDESLDEIGVGKVDGVLMDLGVSSYQLDTAERGFSYHEDAPLD 124 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRMS SG+SA DVVN+ + + L +IL GEEK A I I+K R++AP +TT +L+ + Sbjct: 125 MRMSKSGLSAYDVVNEYSKEQLEKILFEYGEEKFAHGIVSGILKARETAPIKTTLELAEI 184 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 +++ V +P ++FQA+RI VN E++EL +G+ A + L AGG L +++FHS+E Sbjct: 185 VKRNVPLKVRKEKNPCKKTFQAIRIEVNGELDELKKGMSEAFERLSAGGRLAIITFHSIE 244 Query: 255 DRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 DR+VK F +G + +++ +K V ++E++ N RSRSAKLR Sbjct: 245 DRIVKNTFREYCTGCTCPPDFPVCVCGKKPRGRTVYRKTVTASEEELEVNNRSRSAKLR 303 >gi|113971906|ref|YP_735699.1| S-adenosyl-methyltransferase MraW [Shewanella sp. MR-4] gi|122943466|sp|Q0HE75|RSMH_SHESM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|113886590|gb|ABI40642.1| S-adenosyl-methyltransferase MraW [Shewanella sp. MR-4] Length = 313 Score = 209 bits (531), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 121/308 (39%), Positives = 179/308 (58%), Gaps = 15/308 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQE 76 H+ VLLE+ + LN + +D TFG GG+SR ++G N +IA+DRDP A+ ++ Sbjct: 7 HLSVLLEETVGGLNIKDDGIYIDGTFGRGGHSRQVLQRLGENGRLIAIDRDPQAIEAAKQ 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 D + F + F QL DYV + G +DGV+ DLGVSS Q+D +RGFSF + GP Sbjct: 67 FADDPR--FQIVHGGFGQLADYVEELGLVGKIDGVLLDLGVSSPQLDDAERGFSFLRDGP 124 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G +A+ + +A ++D+ + GEEK A IA I R PF T+DL Sbjct: 125 LDMRMDNSQGETAAQWLARAEIEDMAWVFKTYGEEKNARHIARCIAADRDKTPFLRTKDL 184 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI + + N+ HPATR FQA+RI++N+E++++ Q L A L G L ++SFH Sbjct: 185 ADLIARITKNKERNK-HPATRVFQAIRIYINSELDQIDQALEGALTVLAPQGRLSIISFH 243 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP---SNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SLEDR+VK+F R + +V H +P + + K ++P+ E++ N R+RS Sbjct: 244 SLEDRIVKRFI-RRHSQGESVPHGLPITEDQINKSRKLRAIGKAIMPSDEEIERNARARS 302 Query: 309 AKLRAGMR 316 + LR R Sbjct: 303 SVLRIAER 310 >gi|296101245|ref|YP_003611391.1| hypothetical protein ECL_00879 [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055704|gb|ADF60442.1| hypothetical protein ECL_00879 [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 313 Score = 209 bits (531), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 126/311 (40%), Positives = 189/311 (60%), Gaps = 19/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + LN P + +D TFG GG+SR ++G+ ++A+DRDP A++ Q Sbjct: 7 HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGAEGRLLAIDRDPQAIAVAQ- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 T+ D + FS+ FS L DYV ++G +DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 66 TIDDPR--FSIVHGPFSALADYVAERGLTGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G SA++ + A+ D+ ++ GEE+ RIA AIV+R + P T++L Sbjct: 124 LDMRMDPTRGQSAAEWLQTADEADIAWVIKTFGEERFGKRIARAIVERNRIEPMTRTKEL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +I K+ HPATR+FQA+RI+VN+E+EE+ L+S+ L GG L ++SFH Sbjct: 184 AEVIAAATPV-KDKHKHPATRTFQAVRIWVNSELEEIELALKSSLDVLAPGGRLSIISFH 242 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306 SLEDR+VK+F SR +V A M +++ K ++P +E+VA N R+ Sbjct: 243 SLEDRIVKRFMREQSRGPQVPAGLPMTEEQLRKLGGRQLRALGK--LMPGEEEVAENPRA 300 Query: 307 RSAKLRAGMRT 317 RS+ LR RT Sbjct: 301 RSSVLRIAERT 311 >gi|16763510|ref|NP_459125.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167550685|ref|ZP_02344442.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167989993|ref|ZP_02571093.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168230399|ref|ZP_02655457.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168234884|ref|ZP_02659942.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168243465|ref|ZP_02668397.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168262195|ref|ZP_02684168.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168820886|ref|ZP_02832886.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194449989|ref|YP_002044090.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194469862|ref|ZP_03075846.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194735661|ref|YP_002113138.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197248687|ref|YP_002145106.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|198243393|ref|YP_002214072.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200386674|ref|ZP_03213286.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205351459|ref|YP_002225260.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207855634|ref|YP_002242285.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224581963|ref|YP_002635761.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238911177|ref|ZP_04655014.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|20139016|sp|Q8ZRU8|RSMH_SALTY RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262826349|sp|B5F7V6|RSMH_SALA4 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262826360|sp|B5FI64|RSMH_SALDC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262826371|sp|B5R2L6|RSMH_SALEP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262826385|sp|B5RH56|RSMH_SALG2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262826391|sp|B4TJ79|RSMH_SALHS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262826413|sp|C0Q5H8|RSMH_SALPC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262826460|sp|B4TXH0|RSMH_SALSV RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|16418619|gb|AAL19084.1| putative S-adenosyl methionine adenyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|194408293|gb|ACF68512.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194456226|gb|EDX45065.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194711163|gb|ACF90384.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197212390|gb|ACH49787.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197292032|gb|EDY31382.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197937909|gb|ACH75242.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199603772|gb|EDZ02317.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205271240|emb|CAR36028.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205324445|gb|EDZ12284.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205331448|gb|EDZ18212.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205335013|gb|EDZ21777.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205337535|gb|EDZ24299.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205342387|gb|EDZ29151.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205348778|gb|EDZ35409.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206707437|emb|CAR31710.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224466490|gb|ACN44320.1| S-adenosyl-methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261245353|emb|CBG23142.1| S-adenosyl-methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267991798|gb|ACY86683.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301156748|emb|CBW16223.1| S-adenosyl-methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911089|dbj|BAJ35063.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321222306|gb|EFX47378.1| rRNA small subunit methyltransferase H [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323128440|gb|ADX15870.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|326621816|gb|EGE28161.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326626486|gb|EGE32829.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332987073|gb|AEF06056.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 313 Score = 209 bits (531), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 126/311 (40%), Positives = 189/311 (60%), Gaps = 19/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + LN P + +D TFG GG+SR ++G ++A+DRDP A++ Q Sbjct: 7 HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAQ- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 T+ D + FS+ FS L DYV ++ +DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 66 TINDPR--FSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G SA++ + A D+ +L GEE+ A RIA AIV+R + P T++L Sbjct: 124 LDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIARAIVERNREQPMTRTKEL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L ++SFH Sbjct: 184 AEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSIISFH 242 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306 SLEDR+VK+F SR +V A M + +++ K ++P +++VA N R+ Sbjct: 243 SLEDRIVKRFMREQSRGPQVPAGLPMTEAQLKKLGGRELRALGK--LMPGEKEVAENPRA 300 Query: 307 RSAKLRAGMRT 317 RS+ LR RT Sbjct: 301 RSSVLRIAERT 311 >gi|322713140|gb|EFZ04711.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 312 Score = 209 bits (531), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 126/311 (40%), Positives = 189/311 (60%), Gaps = 19/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + LN P + +D TFG GG+SR ++G ++A+DRDP A++ Q Sbjct: 6 HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAQ- 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 T+ D + FS+ FS L DYV ++ +DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 65 TINDPR--FSIIHGPFSALADYVAEREFTGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 122 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G SA++ + A D+ +L GEE+ A RIA AIV+R + P T++L Sbjct: 123 LDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIARAIVERNREQPMTRTKEL 182 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L ++SFH Sbjct: 183 AEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSIISFH 241 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306 SLEDR+VK+F SR +V A M + +++ K ++P +++VA N R+ Sbjct: 242 SLEDRIVKRFMREQSRGPQVPAGLPMTEAQLKKLGGRELRALGK--LMPGEKEVAENPRA 299 Query: 307 RSAKLRAGMRT 317 RS+ LR RT Sbjct: 300 RSSVLRIAERT 310 >gi|117922183|ref|YP_871375.1| S-adenosyl-methyltransferase MraW [Shewanella sp. ANA-3] gi|262826555|sp|A0L1Q0|RSMH_SHESA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|117614515|gb|ABK49969.1| S-adenosyl-methyltransferase MraW [Shewanella sp. ANA-3] Length = 313 Score = 208 bits (530), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 121/308 (39%), Positives = 179/308 (58%), Gaps = 15/308 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQE 76 H+ VLLE+ + LN + +D TFG GG+SR ++G N +IA+DRDP A+ ++ Sbjct: 7 HLSVLLEETVGGLNIKDDGIYIDGTFGRGGHSRQVLQRLGENGRLIAIDRDPQAIEAAKQ 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 D + F + F QL DYV + G +DGV+ DLGVSS Q+D +RGFSF + GP Sbjct: 67 FADDPR--FQIVHGGFGQLADYVEELGLVGKIDGVLLDLGVSSPQLDDAERGFSFLRDGP 124 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G +A+ + +A ++D+ + GEEK A IA I R PF T+DL Sbjct: 125 LDMRMDNSQGETAAQWLARAEIEDMAWVFKTYGEEKNARHIARCIAADRDKTPFLRTKDL 184 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI + + N+ HPATR FQA+RI++N+E++++ Q L A L G L ++SFH Sbjct: 185 ADLIARITKNKERNK-HPATRVFQAIRIYINSELDQIDQALEGALTILAPQGRLSIISFH 243 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP---SNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SLEDR+VK+F R + +V H +P + + K ++P+ E++ N R+RS Sbjct: 244 SLEDRIVKRFI-RRHSQGESVPHGLPITEDQINKSRKLRAIGKAIMPSDEEIERNARARS 302 Query: 309 AKLRAGMR 316 + LR R Sbjct: 303 SVLRIAER 310 >gi|322834428|ref|YP_004214455.1| S-adenosyl-methyltransferase MraW [Rahnella sp. Y9602] gi|321169629|gb|ADW75328.1| S-adenosyl-methyltransferase MraW [Rahnella sp. Y9602] Length = 313 Score = 208 bits (530), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 130/312 (41%), Positives = 190/312 (60%), Gaps = 19/312 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + LN + +D TFG GG+SR ++G + ++A+DRDP A+ E Sbjct: 7 HTSVLLDEAVNGLNIRQDGIYIDGTFGRGGHSRLILSQLGPDGRLLAIDRDPQAIKAA-E 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 ++ D + FS+ FS L DYV D+G +DGV+ DLGVSS Q+D +RGFSF + GP Sbjct: 66 SIDDPR--FSIVHGPFSDLADYVRDRGLEGKIDGVLLDLGVSSPQLDDPERGFSFMRDGP 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G SA++ + +A +D+ +L GEE+ A RIA AIV+R + P T++L Sbjct: 124 LDMRMDPTRGYSATEWLMKAEAEDIAWVLKTFGEERFAKRIARAIVERNRELPMTRTKEL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI + ++ HPATRSFQA+RI++N+E+EE+ + L A + L G L V+SFH Sbjct: 184 ADLIANASPVREKHK-HPATRSFQAIRIYINSELEEIERALDGALEILAPEGRLSVISFH 242 Query: 252 SLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNRRS 306 SLEDR+VK+F SR +V A M + A A + K V +P++ +VA N R+ Sbjct: 243 SLEDRIVKRFIRQHSRGAQVPAGIPM--TEAQIAELGGRSLKSVGKMMPSEAEVAENPRA 300 Query: 307 RSAKLRAGMRTV 318 RS+ LR RT Sbjct: 301 RSSVLRFAERTT 312 >gi|62178687|ref|YP_215104.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|68565397|sp|Q57TD8|RSMH_SALCH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|62126320|gb|AAX64023.1| putative S-adenosyl methionine adenyltransferase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] Length = 312 Score = 208 bits (530), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 126/311 (40%), Positives = 189/311 (60%), Gaps = 19/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + LN P + +D TFG GG+SR ++G ++A+DRDP A++ Q Sbjct: 6 HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAQ- 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 T+ D + FS+ FS L DYV ++ +DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 65 TINDPR--FSIIHGPFSALADYVAEREFTGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 122 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G SA++ + A D+ +L GEE+ A RIA AIV+R + P T++L Sbjct: 123 LDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIARAIVERNREQPMTRTKEL 182 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L ++SFH Sbjct: 183 AEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSIISFH 241 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306 SLEDR+VK+F SR +V A M + +++ K ++P +++VA N R+ Sbjct: 242 SLEDRIVKRFMREQSRGPQVPAGLPMTEAQRKKLGGRELRALGK--LMPGEKEVAENPRA 299 Query: 307 RSAKLRAGMRT 317 RS+ LR RT Sbjct: 300 RSSVLRIAERT 310 >gi|161612464|ref|YP_001586429.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|204927221|ref|ZP_03218423.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|262826399|sp|A9MZL1|RSMH_SALPB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|161361828|gb|ABX65596.1| hypothetical protein SPAB_00154 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|204323886|gb|EDZ09081.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|322615941|gb|EFY12858.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620725|gb|EFY17585.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623923|gb|EFY20760.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627371|gb|EFY24162.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322630678|gb|EFY27442.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638102|gb|EFY34803.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640588|gb|EFY37239.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647729|gb|EFY44214.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648078|gb|EFY44545.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656890|gb|EFY53176.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657400|gb|EFY53672.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663719|gb|EFY59919.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666552|gb|EFY62730.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672289|gb|EFY68401.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676399|gb|EFY72470.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322679508|gb|EFY75553.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686163|gb|EFY82147.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195007|gb|EFZ80193.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200084|gb|EFZ85171.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201095|gb|EFZ86164.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323209492|gb|EFZ94425.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212256|gb|EFZ97080.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216561|gb|EGA01287.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323225810|gb|EGA10030.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323228648|gb|EGA12777.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236738|gb|EGA20814.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239761|gb|EGA23808.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242191|gb|EGA26220.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249385|gb|EGA33301.1| 16S rRNA m(4)C1402 methyltranserfase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252282|gb|EGA36133.1| 16S rRNA m(4)C1402 methyltranserfase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256628|gb|EGA40358.1| 16S rRNA m(4)C1402 methyltranserfase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262997|gb|EGA46547.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265482|gb|EGA48978.1| 16S rRNA m(4)C1402 methyltranserfase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271730|gb|EGA55148.1| 16S rRNA m(4)C1402 methyltranserfase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 313 Score = 208 bits (530), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 125/311 (40%), Positives = 189/311 (60%), Gaps = 19/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + LN P + +D TFG GG+SR ++G ++A+DRDP A++ Q Sbjct: 7 HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAQ- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 T+ D + FS+ FS L DYV ++ +DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 66 TINDPR--FSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G SA++ + A D+ +L GEE+ A RIA AIV+R + P T++L Sbjct: 124 LDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIARAIVERNREQPMTRTKEL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L ++SFH Sbjct: 184 AEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSIISFH 242 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306 SLEDR+VK+F SR ++ A M + +++ K ++P +++VA N R+ Sbjct: 243 SLEDRIVKRFMREQSRGPQIPAGLPMTEAQLKKLGGRELRALGK--LMPGEKEVAENPRA 300 Query: 307 RSAKLRAGMRT 317 RS+ LR RT Sbjct: 301 RSSVLRIAERT 311 >gi|325294232|ref|YP_004280746.1| ribosomal RNA small subunit methyltransferase H [Desulfurobacterium thermolithotrophum DSM 11699] gi|325064680|gb|ADY72687.1| Ribosomal RNA small subunit methyltransferase H [Desulfurobacterium thermolithotrophum DSM 11699] Length = 296 Score = 208 bits (530), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 118/308 (38%), Positives = 182/308 (59%), Gaps = 26/308 (8%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77 H PVLL++ I LL ++ +DAT G GG++ + + + VIA+DRD A+ + Sbjct: 7 HPPVLLKESIELLKAKDARIFVDATLGGGGHTEAILEANPENRVIAIDRDEEAIERAMKR 66 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + + ++ S++ A FSQ+ + + +G V+GV+FDLGVS + G+RGF+ + PLD Sbjct: 67 LERFGDRISIYHANFSQIGEVLEAEGIKEVNGVLFDLGVSHFHLR-GNRGFTVWEEQPLD 125 Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM ++A DVVN+ + K+L I+ GEEK A +IA IV+RR+ P +TT +L+ Sbjct: 126 MRMDRRQKLTARDVVNKLSEKELADIIFKYGEEKFARKIAREIVRRRKIKPIETTLELAK 185 Query: 194 LIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++++ + + HPA ++FQA+RIFVN E +E+ +G+ A + G ++V++FH Sbjct: 186 IVEEVIPKKLWAGRKKHPAIKTFQAIRIFVNREFQEIEEGIPEAANHVACSGRIVVITFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDRLVK F + G F+ ITKK V PT+E++ N SRSAKL Sbjct: 246 SLEDRLVKNIFRNLEG-----------------FKVITKKPVEPTEEEIKKNPASRSAKL 288 Query: 312 RAGMRTVE 319 RA R E Sbjct: 289 RAIERVCE 296 >gi|24375712|ref|NP_719755.1| S-adenosyl-methyltransferase MraW [Shewanella oneidensis MR-1] gi|30173050|sp|Q8E9P0|RSMH_SHEON RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|24350646|gb|AAN57199.1|AE015855_10 conserved hypothetical protein TIGR00006 [Shewanella oneidensis MR-1] Length = 313 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 121/308 (39%), Positives = 178/308 (57%), Gaps = 15/308 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQE 76 H+ VLLE+ + LN + +D TFG GG+SR ++G +IA+DRDP A+ ++ Sbjct: 7 HLSVLLEETVGGLNIKDDGIYIDGTFGRGGHSRQVLQRLGEKGRLIAIDRDPQAIEAAKQ 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 D + F + F QL DYV D G +DGV+ DLGVSS Q+D +RGFSF + GP Sbjct: 67 FADDPR--FQIVHGGFGQLADYVEDLGLVGKIDGVLLDLGVSSPQLDDAERGFSFLRDGP 124 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G +A+ + +A ++D+ + GEEK A IA I R PF T+DL Sbjct: 125 LDMRMDNSQGETAAQWLARAEIEDMAWVFKTYGEEKNARHIARCIAADRDKTPFLRTKDL 184 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI + + N+ HPATR FQA+RI++N+E++++ Q L A L G L ++SFH Sbjct: 185 ADLIARITKNKERNK-HPATRVFQAIRIYINSELDQIDQALEGALTVLAPQGRLSIISFH 243 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP---SNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SLEDR+VK+F R + +V H +P + + K ++P+ E++ N R+RS Sbjct: 244 SLEDRIVKRFI-RRHSQGESVPHGLPITEDQINKSRKLRAIGKAIMPSDEEIERNARARS 302 Query: 309 AKLRAGMR 316 + LR R Sbjct: 303 SVLRIAER 310 >gi|291544487|emb|CBL17596.1| S-adenosyl-methyltransferase MraW [Ruminococcus sp. 18P13] Length = 307 Score = 208 bits (529), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 128/309 (41%), Positives = 175/309 (56%), Gaps = 13/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H+ VL E+ I L P + +D T G G++ K+ G +IALDRDP AV + Sbjct: 5 HISVLPEETIEGLGVKPDGIYVDGTVGGAGHALRIAKLLTDGGKLIALDRDPDAVKTADK 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + Y + Q+ FSQ++ + G VDGV+ DLGVSS Q+D G RGFS+ PL Sbjct: 65 RLAQYPA--VVVQSNFSQIRQVLDSLGISLVDGVLLDLGVSSHQLDTGSRGFSYHVDAPL 122 Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 DMRMS +G+SA D+VN A+ ++L RIL GEEK A RI IV+ RQ P +TT L+ Sbjct: 123 DMRMSQTGVSARDLVNTASPEELVRILFEYGEEKFARRIVAEIVEARQKEPIETTLQLAE 182 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 LI+ V +P ++FQA+RI VN E++ L GL +A LK GG L V++FHSL Sbjct: 183 LIKAGVPAKARREKNPCKKTFQAIRIAVNGELDHLTSGLDAAFACLKPGGRLAVITFHSL 242 Query: 254 EDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 EDRLVK+ FA G + + H + + +K + E++ N RSRSAKL Sbjct: 243 EDRLVKQKFAGWCKGCICPPDFPVCVCGHTPQGRLVNRKPIEAKPEELEENNRSRSAKL- 301 Query: 313 AGMRTVERS 321 R +ERS Sbjct: 302 ---RIIERS 307 >gi|167751501|ref|ZP_02423628.1| hypothetical protein EUBSIR_02502 [Eubacterium siraeum DSM 15702] gi|167655309|gb|EDR99438.1| hypothetical protein EUBSIR_02502 [Eubacterium siraeum DSM 15702] Length = 308 Score = 208 bits (529), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 117/299 (39%), Positives = 175/299 (58%), Gaps = 8/299 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77 H+PVLL + I L+ P + +D T G G+S K +I DRDP AV +E Sbjct: 7 HIPVLLSETIESLDIKPDGIYVDCTTGFAGHSSEIAKRLTTGRLIGFDRDPDAVKAAEEK 66 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++DY +L FS + + + GV DGV+ DLGVSS Q+D +RGFS+ + PLD Sbjct: 67 LKDY--PHTLINRKFSTFDESLDEIGVGKVDGVLMDLGVSSYQLDTAERGFSYHEDAPLD 124 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRMS SG+SA DVVN+ + + L +IL GEEK A I I+K R++AP +TT +L+ + Sbjct: 125 MRMSKSGLSAYDVVNEYSKEQLEKILFEYGEEKFAHGIVSGILKARETAPIKTTLELAEI 184 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 +++ V +P ++FQA+RI VN E++EL +G+ A + L GG L +++FHS+E Sbjct: 185 VKRNVPLKVRKEKNPCKKTFQAIRIEVNGELDELKKGMSEAFERLSQGGRLAIITFHSIE 244 Query: 255 DRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 DR+VK F +G + +++ +K V ++E++A N RSRSAKLR Sbjct: 245 DRIVKNTFREYCTGCTCPPDFPVCVCGKKPRGRTVYRKPVTASEEELAVNNRSRSAKLR 303 >gi|320084363|emb|CBY94156.1| putative S-adenosyl methionine adenyltransferase [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 346 Score = 208 bits (529), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 126/311 (40%), Positives = 189/311 (60%), Gaps = 19/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + LN P + +D TFG GG+SR ++G ++A+DRDP A++ Q Sbjct: 40 HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAQ- 98 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 T+ D + FS+ FS L DYV ++ +DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 99 TINDPR--FSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 156 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G SA++ + A D+ +L GEE+ A RIA AIV+R + P T++L Sbjct: 157 LDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIARAIVERNREQPMTRTKEL 216 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L ++SFH Sbjct: 217 AEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSIISFH 275 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306 SLEDR+VK+F SR +V A M + +++ K ++P +++VA N R+ Sbjct: 276 SLEDRIVKRFMREQSRGPQVPAGLPMTEAQLKKLGGRELRALGK--LMPGEKEVAENPRA 333 Query: 307 RSAKLRAGMRT 317 RS+ LR RT Sbjct: 334 RSSVLRIAERT 344 >gi|225019362|ref|ZP_03708554.1| hypothetical protein CLOSTMETH_03315 [Clostridium methylpentosum DSM 5476] gi|224947993|gb|EEG29202.1| hypothetical protein CLOSTMETH_03315 [Clostridium methylpentosum DSM 5476] Length = 307 Score = 208 bits (529), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 119/300 (39%), Positives = 177/300 (59%), Gaps = 9/300 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77 H VLLE+ + LN P + +D T G G+SR K + + DRDP A++ E Sbjct: 5 HTSVLLEECLEGLNIRPDGIYVDGTTGGAGHSREIAKRLTTGRLYSFDRDPDAIAVASER 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + Y L A FS + + +GV DGV+ DLGVSS Q+D +RGFS+ G LD Sbjct: 65 LAQYPCS-ELVHANFSTMDAELAKRGVNQVDGVLLDLGVSSFQLDTAERGFSYLNDGILD 123 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRMS SG+SA ++VN ++L RI+ GEEK IA IV++R+ P +TT+ LS + Sbjct: 124 MRMSKSGLSAREMVNTYPAEELARIIRDYGEEKYYYSIAKNIVRQREVQPIETTRQLSEI 183 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 + ++ +P+ R+FQA+RI VN E++ L+QGL +A L +GG L+V++FHSLE Sbjct: 184 VNSSMPAKARREKNPSKRTFQAIRIAVNEELDSLSQGLENAFSVLSSGGRLVVITFHSLE 243 Query: 255 DRLVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 DR+VK+F A + + N P + + KK ++P+++++A NRRS+SAKLR Sbjct: 244 DRIVKQFNAKMCQGCICPPDFPICVCNNRPKA-RLVNKKPILPSEQELAHNRRSQSAKLR 302 >gi|157147494|ref|YP_001454813.1| S-adenosyl-methyltransferase MraW [Citrobacter koseri ATCC BAA-895] gi|263446032|sp|A8ALL4|RSMH_CITK8 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|157084699|gb|ABV14377.1| hypothetical protein CKO_03293 [Citrobacter koseri ATCC BAA-895] Length = 314 Score = 208 bits (529), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 126/311 (40%), Positives = 187/311 (60%), Gaps = 19/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + LN P + +D TFG GG+SR ++G ++A+DRDP A++ Q Sbjct: 8 HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSRLGEEGRLLAIDRDPQAIAEAQ- 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + D + FS+ FS L DYV ++ +DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 67 AINDPR--FSIIHGPFSALADYVSERELIGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 124 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G SA++ + A D+ +L GEE+ A RIA AIV+R + P T++L Sbjct: 125 LDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIARAIVERNREQPMTRTKEL 184 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L ++SFH Sbjct: 185 AEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSIISFH 243 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306 SLEDR+VK+F SR +V A M +++ K ++P +E+VA N R+ Sbjct: 244 SLEDRIVKRFMREQSRGPQVPAGLPMTEEQLKKLGGRELRALGK--LMPGEEEVAENPRA 301 Query: 307 RSAKLRAGMRT 317 RS+ LR RT Sbjct: 302 RSSVLRIAERT 312 >gi|116052453|ref|YP_792766.1| S-adenosyl-methyltransferase MraW [Pseudomonas aeruginosa UCBPP-PA14] gi|122257540|sp|Q02H20|RSMH_PSEAB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|115587674|gb|ABJ13689.1| putative methyltransferase [Pseudomonas aeruginosa UCBPP-PA14] Length = 313 Score = 207 bits (528), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 124/305 (40%), Positives = 186/305 (60%), Gaps = 16/305 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQE 76 H+ VLLE+ ++ L P LD TFG GG+SR+ + G ++ D+DP A+ G+ Sbjct: 7 HITVLLEEAVSALAPREDGCYLDGTFGRGGHSRALLEKLGTGGRLLGFDKDPQAIQTGK- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F + Q +F++L D V +G VDGV+ DLGVSS Q+D +RGFSF GP Sbjct: 66 ALAAEDGRFVIVQRSFAELGDEVRARGLEGRVDGVLLDLGVSSPQLDDPERGFSFLNDGP 125 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ GISA++ + A +++ R+ + GEE+ A R+A AIV+RRQ PF+ T DL Sbjct: 126 LDMRMNPGQGISAAEFIANATEEEIARVFKVYGEERFAKRMARAIVQRRQERPFERTADL 185 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +I + + +PATR+FQ LRI VNNE+ +L +GL +A ++L GG L+V+SFH Sbjct: 186 AEVITVANPAWEKGK-NPATRAFQGLRIHVNNELGDLERGLDAALESLAVGGRLVVISFH 244 Query: 252 SLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVP---TQEDVAFNRRSR 307 SLEDR+VK F + G+ + +P + VF+ K + P ++E++ N RSR Sbjct: 245 SLEDRIVKLFMRKHAKGEADNLPRDLPIRSK--VFEPRLKLLGKPQYASEEELKANPRSR 302 Query: 308 SAKLR 312 SA +R Sbjct: 303 SAVMR 307 >gi|212213353|ref|YP_002304289.1| S-adenosyl-methyltransferase MraW [Coxiella burnetii CbuG_Q212] gi|263447408|sp|B6J2R7|RSMH_COXB2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|212011763|gb|ACJ19144.1| S-adenosyl-methyltransferase [Coxiella burnetii CbuG_Q212] Length = 307 Score = 207 bits (528), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 123/307 (40%), Positives = 184/307 (59%), Gaps = 23/307 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQE 76 H PVL ++V+ L P + +D TFG GG+S ++G N ++A+D+DP AV+ + Sbjct: 4 HKPVLFDEVMEGLAIRPDGIYVDGTFGRGGHSFGILQRLGPNGRLMAMDKDPDAVAVENK 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + + S+ TF+ LQ V D+G V+G++ D+GVSS Q++ RGFSF K GP Sbjct: 64 ALFE-DARLSIVHETFANLQKAVRDRGWEGKVNGILLDIGVSSPQLEDAKRGFSFSKDGP 122 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ + A+ +NQA ++D+ R+L GEE+ A RIA AIV R+ P TQ+L Sbjct: 123 LDMRMNPKQSMDAASWINQAAMEDIRRVLWNYGEERFAKRIAQAIVNAREEKPITRTQEL 182 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 S ++ K Y + + HPATR+FQA+RIF+N E++EL + L + L GG L V+SFH Sbjct: 183 SDIVIKA-YPQREIKKHPATRTFQAIRIFINRELDELRECLPQCLETLAVGGRLCVISFH 241 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKK------VVVPTQEDVAFNRR 305 SLEDRLVK+F S R +P P + + I + ++ PT+ ++ N R Sbjct: 242 SLEDRLVKRFIQKES------RDHLPREI-PILAKDIKHRLKPLGSLIRPTEAEIKKNPR 294 Query: 306 SRSAKLR 312 +RSA+LR Sbjct: 295 ARSARLR 301 >gi|292490616|ref|YP_003526055.1| S-adenosyl-methyltransferase MraW [Nitrosococcus halophilus Nc4] gi|291579211|gb|ADE13668.1| S-adenosyl-methyltransferase MraW [Nitrosococcus halophilus Nc4] Length = 317 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 125/308 (40%), Positives = 188/308 (61%), Gaps = 12/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H PVLL +VI L + +DATFG GG++++ S+ ++ +D+DP A++ G+ Sbjct: 12 HQPVLLREVIQALAIRRDGLYVDATFGRGGHAQAILDALSSEGRLLGVDKDPEAIAAGR- 70 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +FS+ QA+ +L V ++G V+GV+FDLGVSS Q++ RGFSF + GP Sbjct: 71 ILAQQDRRFSIVQASIGELARVVAEQGWLKRVNGVLFDLGVSSPQLENAKRGFSFLQDGP 130 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ + G SA++ + A K++ +L GEE+ RIA AIV+ R+ P T+ L Sbjct: 131 LDMRMNPAVGQSAAEWLASATEKEIAAVLKTYGEERFCRRIARAIVQAREINPLTRTKQL 190 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ K + R HPATRSFQA+RIF+NNE+EEL L A L G L+V+SFH Sbjct: 191 AEVVAKANPSWEPGR-HPATRSFQAIRIFINNELEELRAALEQAVTVLAVKGRLVVISFH 249 Query: 252 SLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK+FF +S G+ + + + A Q + K++ PT E+V+ N R+RSA+ Sbjct: 250 SLEDRMVKRFFRQKSRGEDLPPDLPVMQDHFQASLQ-VLGKLIWPTPEEVSRNPRARSAR 308 Query: 311 LRAGMRTV 318 LR + V Sbjct: 309 LRVAEKPV 316 >gi|218698505|ref|YP_002406134.1| S-adenosyl-methyltransferase MraW [Escherichia coli IAI39] gi|263446431|sp|B7NHI8|RSMH_ECO7I RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|218368491|emb|CAR16226.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Escherichia coli IAI39] Length = 313 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 127/312 (40%), Positives = 188/312 (60%), Gaps = 21/312 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR----SFCKMGSNVIALDRDPFAVSCGQ 75 H VLL++ + LN P + +D TFG GG+SR F + G ++A+DRDP A++ + Sbjct: 7 HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQFGEEG-RLLAIDRDPQAIAVAK 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 T+ D + FS+ FS L DYV ++ +DG++ DLGVSS Q+D +RGFSF + G Sbjct: 66 -TIDDPR--FSIIHGPFSALGDYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDG 122 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + G SA++ + A D+ +L GEE+ A RIA AIV+R + P T++ Sbjct: 123 PLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKE 182 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L ++SF Sbjct: 183 LAEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISF 241 Query: 251 HSLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRR 305 HSLEDR+VK+F SR +V A M +++ K ++P +E+VA N R Sbjct: 242 HSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGK--LMPGEEEVAENPR 299 Query: 306 SRSAKLRAGMRT 317 +RS+ LR RT Sbjct: 300 ARSSVLRIAERT 311 >gi|302533959|ref|ZP_07286301.1| S-adenosyl-methyltransferase MraW [Streptomyces sp. C] gi|302442854|gb|EFL14670.1| S-adenosyl-methyltransferase MraW [Streptomyces sp. C] Length = 319 Score = 207 bits (527), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 121/311 (38%), Positives = 184/311 (59%), Gaps = 12/311 (3%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74 HVPV+L++ + LL PA PG V++D T G GG+S + + +I LDRD A+ Sbjct: 7 HVPVMLQRCLDLLAPALERPGAVVVDCTLGLGGHSEALLTRFPEARLIGLDRDKEALRLS 66 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E + + ++ +L A ++ L + + + G V G++FDLGVSSMQ+D DRGF++ + Sbjct: 67 GERLAPFGDRATLVHAIYADLAEVLDNLGLPAVQGILFDLGVSSMQLDEADRGFAYAQDA 126 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM +G+SA++V+N +L RIL GEEKQA RI AIV+ R+ PF + Sbjct: 127 PLDMRMDQTTGVSAAEVLNTYAPGELVRILRQYGEEKQAKRIVSAIVREREKEPFSNSAR 186 Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L LI+ + +K +PA R+FQALRI VN E+ L + + +A + GG + V+S Sbjct: 187 LVELIRDALPQAAKRTGGNPAKRTFQALRIEVNGELSGLERAIPAAVDRIAVGGRIAVLS 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 +HSLEDRLVK+ FA+ + ++P P + +T+ +PT+E++A NRR+ Sbjct: 247 YHSLEDRLVKQVFAAGATSTAPPGLPVVPEKYQPK-LKLLTRGAELPTEEEIAENRRAAP 305 Query: 309 AKLRAGMRTVE 319 A+ R R E Sbjct: 306 ARFRGVERIRE 316 >gi|239931801|ref|ZP_04688754.1| S-adenosylmethionine-dependent methyltransferase [Streptomyces ghanaensis ATCC 14672] Length = 309 Score = 207 bits (527), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 123/307 (40%), Positives = 183/307 (59%), Gaps = 12/307 (3%) Query: 24 LLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETM 78 +L++ + LL PA PG V++D T G GG+S + + + ++ALDRD A+ E + Sbjct: 1 MLQRCLDLLAPALERPGAVVVDCTLGLGGHSEALLRRFPEARLVALDRDKEALRLSGERL 60 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + E+ +L A + +L D + GV GV+FDLGVSSMQ+D DRGF++ + PLDM Sbjct: 61 APFGERATLVHAVYDELPDVLARLGVPRVQGVLFDLGVSSMQLDEADRGFAYAQDAPLDM 120 Query: 136 RMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM +G+SA++V+N +L RIL GEEKQA RI AIV+ R+ PF + L L Sbjct: 121 RMDQTAGVSAAEVLNTYPPGELVRILRAYGEEKQAKRIVAAIVREREKEPFTRSARLVEL 180 Query: 195 IQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 I+ + +K +PA R+FQALRI VN E+ L + + +A KAL G + V+S+HSL Sbjct: 181 IRDALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVKALDVDGRIAVLSYHSL 240 Query: 254 EDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 EDRLVK+ FA+ + ++P P + +T+ +PT+E++A NRR+ A+LR Sbjct: 241 EDRLVKQVFAAGAATTAPPGLPVVPERYQPR-LKLLTRGAELPTEEEIAENRRAAPARLR 299 Query: 313 AGMRTVE 319 R E Sbjct: 300 GAQRIRE 306 >gi|188532894|ref|YP_001906691.1| S-adenosyl-methyltransferase MraW [Erwinia tasmaniensis Et1/99] gi|263447020|sp|B2VD83|RSMH_ERWT9 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|188027936|emb|CAO95793.1| S-adenosyl-methyltransferase MraW [Erwinia tasmaniensis Et1/99] Length = 313 Score = 207 bits (527), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 125/318 (39%), Positives = 189/318 (59%), Gaps = 21/318 (6%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAV 71 H H VLL++ + LN + +D TFG GG+SR ++G + + A+DRDP A+ Sbjct: 2 HDTFKHTTVLLDEAVNGLNIKSDGIYIDGTFGRGGHSRLILSQLGEHGRLYAIDRDPQAI 61 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSF 127 + E +F++ FS L +Y ++G +DG++ DLGVSS Q+D +RGFSF Sbjct: 62 AAAAEIT---DPRFTIIHGPFSALAEYAEERGLKGKIDGILLDLGVSSPQLDDAERGFSF 118 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + GPLDMRM + G SA++ + +A D+ +L GEE+ A RIA AIV+R + P Sbjct: 119 MRDGPLDMRMDPTRGQSAAEWLLKAEESDIAFVLKTFGEERFAKRIARAIVERNREQPMT 178 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T++L+ +I K+ HPATRSFQA+RI+VN+E+EE+ Q L+ A AL AGG L Sbjct: 179 RTKELADVIYAATPV-KDKFKHPATRSFQAIRIWVNSELEEIEQALKGALSALTAGGRLS 237 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIP------SNAHPAVFQSITKKVVVPTQEDV 300 ++SFHSLEDR+VK+F +S + + H +P S+ +++ K ++P + +V Sbjct: 238 IISFHSLEDRIVKRFMREQS-RGPQIPHGLPMTEAQLSSLGGRQLKALGK--MMPGESEV 294 Query: 301 AFNRRSRSAKLRAGMRTV 318 A N R+RS+ LR RT Sbjct: 295 ADNPRARSSVLRIAERTA 312 >gi|301026110|ref|ZP_07189585.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 69-1] gi|300395681|gb|EFJ79219.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 69-1] Length = 313 Score = 207 bits (527), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 126/311 (40%), Positives = 188/311 (60%), Gaps = 19/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + LN P + +D TFG GG+SR ++G ++A+DRDP A+S + Sbjct: 7 HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAISVAK- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 T+ D + FS+ FS L +YV ++ +DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 66 TIDDPR--FSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G SA++ + A D+ +L GEE+ A RIA AIV+R + P T++L Sbjct: 124 LDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKEL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L ++SFH Sbjct: 184 AEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISFH 242 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306 SLEDR+VK+F SR +V A M +++ K ++P +E+VA N R+ Sbjct: 243 SLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGK--LMPGEEEVAENPRA 300 Query: 307 RSAKLRAGMRT 317 RS+ LR RT Sbjct: 301 RSSVLRIAERT 311 >gi|56459539|ref|YP_154820.1| S-adenosyl-methyltransferase MraW [Idiomarina loihiensis L2TR] gi|68565448|sp|Q5R0L7|RSMH_IDILO RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|56178549|gb|AAV81271.1| Predicted S-adenosylmethionine-dependent methyltransferase [Idiomarina loihiensis L2TR] Length = 315 Score = 207 bits (527), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 127/307 (41%), Positives = 182/307 (59%), Gaps = 13/307 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQE 76 HV VLLE+ I L P +DATFG GG++R+ ++G + VIALD+DP A++ Sbjct: 8 HVSVLLEESIEALATDPQGTYIDATFGRGGHTRALLNQLGDDARVIALDQDPEAIAAAAA 67 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 D + F + FS LQ + D + V G++FDLGVSS Q+D +RGFSF + GP Sbjct: 68 FADDPR--FQIIHTPFSNLQQVLDDLQLNRQVTGILFDLGVSSPQLDDAERGFSFMRDGP 125 Query: 133 LDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + SG +A++ +N+A D++ +L GEE+ A RIA AIV R+ PF T+ L Sbjct: 126 LDMRMNTTSGETAAEWLNRAEKDDISWVLKEYGEERFARRIASAIVMDREKKPFTRTKQL 185 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +I + V K HPATR+FQA+RI +N E+E++ Q L ++ LK G L+V+SFH Sbjct: 186 AEMIAR-VSPVKEKHKHPATRTFQAIRIHINRELEQIEQALEASLSGLKEDGRLVVISFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK--KVVVPTQEDVAFNRRSRSA 309 SLEDRLVK+F S + + A +++ K K + P + +V N RSRS+ Sbjct: 245 SLEDRLVKRFIRKHSEGKQLPPGLPVTEAERNKDKALEKVGKAIKPGKAEVQLNPRSRSS 304 Query: 310 KLRAGMR 316 LR R Sbjct: 305 VLRIARR 311 >gi|329940950|ref|ZP_08290230.1| SAM-dependent methyltransferase [Streptomyces griseoaurantiacus M045] gi|329300244|gb|EGG44142.1| SAM-dependent methyltransferase [Streptomyces griseoaurantiacus M045] Length = 310 Score = 207 bits (526), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 123/308 (39%), Positives = 183/308 (59%), Gaps = 12/308 (3%) Query: 23 VLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 ++L + + LL PA PG V++D T G GG+S + V +ALDRD A+ E Sbjct: 1 MMLHRCLDLLAPALERPGAVVVDCTLGLGGHSEALLARFPEVRLVALDRDKEALRLSAER 60 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + Y E+ +L A + +L + + G V GV+FDLGVSSMQ+D DRGF++ + PLD Sbjct: 61 LAPYGERATLVHAVYDELPEVLDRLGLARVQGVLFDLGVSSMQLDEADRGFAYAQDAPLD 120 Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM S G SA++V+N +L RIL GEEKQA RI A+V+ R+ PF T+ L Sbjct: 121 MRMDQSTGTSAAEVLNTYPPGELVRILRAYGEEKQAKRIVSAVVREREREPFTTSARLVE 180 Query: 194 LIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ + +K +PA R+FQALRI VN E+ L + + +A +AL GG + V+++HS Sbjct: 181 VIRDALPQAAKRTGGNPAKRTFQALRIEVNGELTVLERAIPAAVRALDVGGRIAVLAYHS 240 Query: 253 LEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDRLVK+ FA+ + ++P P + +T+ +PT+E++A NRR+ A+L Sbjct: 241 LEDRLVKQVFAAGAAGTAPPGLPVVPERYQPR-LKLLTRGAELPTEEEIAENRRAAPARL 299 Query: 312 RAGMRTVE 319 R +R E Sbjct: 300 RGALRIRE 307 >gi|292616071|ref|XP_689063.3| PREDICTED: probable S-adenosyl-L-methionine-dependent methyltransferase METT5D1-like isoform 2 [Danio rerio] gi|292616073|ref|XP_002662882.1| PREDICTED: probable S-adenosyl-L-methionine-dependent methyltransferase METT5D1-like [Danio rerio] Length = 402 Score = 207 bits (526), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 126/335 (37%), Positives = 182/335 (54%), Gaps = 38/335 (11%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77 H PV++++V+ LN PG+++LD TFGAGG+S++ + G V+A DRDP A Q+ Sbjct: 67 HTPVMVKEVLQFLNIKPGQIVLDLTFGAGGHSKAILQSVPGVTVVAADRDPTAFRMAQQL 126 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKG-----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +Y+ + FS+L + +P G VD + D G SSMQ+D +RGFS K GP Sbjct: 127 AEEYQGKVKPVLGRFSELNNLLPALGLGPGTVDAALLDAGCSSMQMDSAERGFSLSKDGP 186 Query: 133 LDMRMSCSGIS----ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM A+DVVN + + L +L GEE+ +IA AI + R P T Sbjct: 187 LDMRMDGDRYPDMPCAADVVNALDQQALASVLAAYGEERHTRKIAAAIAQARSVYPIGRT 246 Query: 189 QDLSSLI----QKTVYFSKNNRI----HPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 L+S++ + +++ +R+ H AT++FQALRIFVN+E+ EL GLR A+ L+ Sbjct: 247 LQLASIVAGAFPASALYARRDRLQRPSHVATKTFQALRIFVNDELNELHAGLRVAQTLLR 306 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP-SNAHPA---------------- 283 G L V++FHSLEDRL K+F R + + A PA Sbjct: 307 PKGRLCVLTFHSLEDRLTKRFLRGEDLAAPPRRSLRQHARARPAGQEEEFEEEEEGDEGG 366 Query: 284 --VFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 V KKV+ P++E+V N R+RSAKLR +R Sbjct: 367 NSVHWVSLKKVIKPSEEEVQENPRARSAKLRTAVR 401 >gi|91791714|ref|YP_561365.1| S-adenosyl-methyltransferase MraW [Shewanella denitrificans OS217] gi|123061331|sp|Q12SD4|RSMH_SHEDO RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|91713716|gb|ABE53642.1| methyltransferase [Shewanella denitrificans OS217] Length = 313 Score = 207 bits (526), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 120/308 (38%), Positives = 180/308 (58%), Gaps = 15/308 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H+ VLL++ + LN P + +D TFG GG+SR +G N +IA+DRDP A+ ++ Sbjct: 7 HLSVLLKETVDGLNIQPDGIYIDGTFGRGGHSRHVLSHLGPNGRLIAIDRDPQAIEAAKQ 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 D + F + F QL DYV + G +DGV+ DLGVSS Q+D +RGFSF + GP Sbjct: 67 FADDPR--FQIVHGGFGQLADYVAELGLVGKIDGVLLDLGVSSPQLDDAERGFSFLRDGP 124 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G +A+ + +A ++D+ + GEEK + IA I R+ PF T+DL Sbjct: 125 LDMRMDNSQGQTAAQWIARAEIEDMAWVFKTYGEEKNSRHIARCIAADREKTPFLRTKDL 184 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI + + N+ HPATR FQA+RI++N+E+E++ Q L A L G + ++SFH Sbjct: 185 ADLIARITKNKERNK-HPATRVFQAIRIYINSELEQIDQALEGAVNVLAPHGRMSIISFH 243 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP---SNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SLEDR+VK+F R + +V H +P + + + K + P++ +V N R+RS Sbjct: 244 SLEDRMVKRFM-RRHSQGESVPHGLPITEAEINKSKKLKTLGKAMKPSEIEVEQNPRARS 302 Query: 309 AKLRAGMR 316 + LR R Sbjct: 303 SVLRVAER 310 >gi|117924071|ref|YP_864688.1| S-adenosyl-methyltransferase MraW [Magnetococcus sp. MC-1] gi|263456390|sp|A0L5N9|RSMH_MAGSM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|117607827|gb|ABK43282.1| S-adenosyl-methyltransferase MraW [Magnetococcus sp. MC-1] Length = 313 Score = 207 bits (526), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 125/309 (40%), Positives = 175/309 (56%), Gaps = 14/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQE 76 H VLL++ +A L P G LD TFG GG+SR C VI LDRD A++ GQ Sbjct: 5 HTTVLLQETVAALAPQRGGCYLDGTFGGGGHSRLLLEQCAPTGRVIGLDRDADAIANGQA 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + +L +A F+Q+ + + +DG + DLGVSS Q+D +RGFSF +SGPL Sbjct: 65 LVAQMAGRLTLVKAPFAQVAEVLQQLEIAALDGAMLDLGVSSHQLDTAERGFSFIRSGPL 124 Query: 134 DMRMS--CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 DMRM + +A+ ++N + L I GEE+ A RIA +VK RQ PF TT DL Sbjct: 125 DMRMDGDSTTPTAAALLNTLDADALADIFFHYGEERHARRIARMVVKVRQQHPFTTTTDL 184 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + I +RIHPATR FQ LRI VN E+++L Q L LK GG L V+SFH Sbjct: 185 AERIAHMT--PGYSRIHPATRVFQGLRIAVNEELQQLEQALSVLIGLLKPGGHLAVISFH 242 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAH--PAVFQSITKKVVVPTQEDVAFNRRSR 307 SLEDR+VK+ F A++ + +R + + A A + + K + P++ ++ N R+R Sbjct: 243 SLEDRIVKRLFRDAAKPPEDPVLRGLPIAQAQRPKATLKLVHNKPLTPSEAEIEQNPRAR 302 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 303 SAKLRVAQK 311 >gi|311086539|gb|ADP66620.1| S-adenosyl-methyltransferase MraW [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] Length = 302 Score = 207 bits (526), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 117/285 (41%), Positives = 180/285 (63%), Gaps = 15/285 (5%) Query: 39 VILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95 + +D+TFG GG+S K + ++DRDP A S G + ++D +F + FS+L Sbjct: 16 IYIDSTFGTGGHSNEILKKLGQSGRLYSIDRDPIAFSIGSK-IKD--SRFHIINENFSKL 72 Query: 96 QDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQ 150 D+ ++ V+G++FDLGVSS+QID RGFSF+ GPLDMRM+ + GISAS+ + + Sbjct: 73 LDFAKNEKIIGKVNGIIFDLGVSSIQIDDYRRGFSFKNDGPLDMRMNPNYGISASEWLFE 132 Query: 151 ANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPA 210 +NVK+++ +L GEE+ + +IA+AI +R Q +T +L+++I+KT+ +KN HPA Sbjct: 133 SNVKEISFVLKNFGEERFSRKIAYAIKRRSQIKKITSTLELANIIKKTIP-TKNKFKHPA 191 Query: 211 TRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVM 270 RSFQA+RI++N E+EE+ + L S K LK GG + ++SFHSLEDRLVKKF S K + Sbjct: 192 RRSFQAIRIYINQELEEIQKALESTLKILKPGGRISIISFHSLEDRLVKKFMIKNSTKAI 251 Query: 271 AVRHMIPSNAHPAVFQSITKKV---VVPTQEDVAFNRRSRSAKLR 312 M + + K+ ++PTQ ++ N R+RS+ LR Sbjct: 252 IPYGMPITEEQLNRLTTCKLKIINRILPTQNEINNNPRARSSVLR 296 >gi|168464328|ref|ZP_02698231.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|194443193|ref|YP_002039352.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|262826395|sp|B4SU42|RSMH_SALNS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|194401856|gb|ACF62078.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|195632559|gb|EDX51013.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 313 Score = 207 bits (526), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 125/311 (40%), Positives = 188/311 (60%), Gaps = 19/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + LN P + +D TFG GG+SR ++G ++A+DRDP A++ Q Sbjct: 7 HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAQ- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + D + FS+ FS L DYV ++ +DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 66 AINDPR--FSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G SA++ + A D+ +L GEE+ A RIA AIV+R + P T++L Sbjct: 124 LDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIARAIVERNREQPMTRTKEL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L ++SFH Sbjct: 184 AEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSIISFH 242 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306 SLEDR+VK+F SR +V A M + +++ K ++P +++VA N R+ Sbjct: 243 SLEDRIVKRFMREQSRGPQVPAGLPMTEAQLKKLGGRELRALGK--LMPGEKEVAENPRA 300 Query: 307 RSAKLRAGMRT 317 RS+ LR RT Sbjct: 301 RSSVLRIAERT 311 >gi|56412392|ref|YP_149467.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197361328|ref|YP_002140963.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|68565445|sp|Q5PDH4|RSMH_SALPA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262826422|sp|B5BLG4|RSMH_SALPK RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|56126649|gb|AAV76155.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197092803|emb|CAR58229.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 313 Score = 206 bits (525), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 125/311 (40%), Positives = 188/311 (60%), Gaps = 19/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + LN P + +D TFG GG+SR ++G ++A+DRDP A++ Q Sbjct: 7 HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAQ- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + D + FS+ FS L DYV ++ +DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 66 AISDPR--FSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G SA++ + A D+ +L GEE+ A RIA AIV+R + P T++L Sbjct: 124 LDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIARAIVERNREQPMTRTKEL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L ++SFH Sbjct: 184 AEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSIISFH 242 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306 SLEDR+VK+F SR +V A M + +++ K ++P +++VA N R+ Sbjct: 243 SLEDRIVKRFMREQSRGPQVPAGLPMTEAQLKKLGGRELRALGK--LMPGEKEVAENPRA 300 Query: 307 RSAKLRAGMRT 317 RS+ LR RT Sbjct: 301 RSSVLRIAERT 311 >gi|126172646|ref|YP_001048795.1| S-adenosyl-methyltransferase MraW [Shewanella baltica OS155] gi|152998944|ref|YP_001364625.1| S-adenosyl-methyltransferase MraW [Shewanella baltica OS185] gi|160873530|ref|YP_001552846.1| S-adenosyl-methyltransferase MraW [Shewanella baltica OS195] gi|217971625|ref|YP_002356376.1| S-adenosyl-methyltransferase MraW [Shewanella baltica OS223] gi|304411651|ref|ZP_07393263.1| S-adenosyl-methyltransferase MraW [Shewanella baltica OS183] gi|307306297|ref|ZP_07586042.1| S-adenosyl-methyltransferase MraW [Shewanella baltica BA175] gi|262826489|sp|B8E4L2|RSMH_SHEB2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262826490|sp|A3CZL3|RSMH_SHEB5 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262826491|sp|A6WIC3|RSMH_SHEB8 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262826492|sp|A9KY21|RSMH_SHEB9 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|125995851|gb|ABN59926.1| S-adenosyl-methyltransferase MraW [Shewanella baltica OS155] gi|151363562|gb|ABS06562.1| S-adenosyl-methyltransferase MraW [Shewanella baltica OS185] gi|160859052|gb|ABX47586.1| S-adenosyl-methyltransferase MraW [Shewanella baltica OS195] gi|217496760|gb|ACK44953.1| S-adenosyl-methyltransferase MraW [Shewanella baltica OS223] gi|304349839|gb|EFM14245.1| S-adenosyl-methyltransferase MraW [Shewanella baltica OS183] gi|306911170|gb|EFN41597.1| S-adenosyl-methyltransferase MraW [Shewanella baltica BA175] gi|315265760|gb|ADT92613.1| S-adenosyl-methyltransferase MraW [Shewanella baltica OS678] Length = 313 Score = 206 bits (525), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 121/308 (39%), Positives = 177/308 (57%), Gaps = 15/308 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76 H+ VLL + + LN + +D TFG GG+SR + +G N +IA+DRDP A+ ++ Sbjct: 7 HLSVLLAETVGGLNIKDDGIYIDGTFGRGGHSRQVLQQLGENGRLIAIDRDPQAIEAAKQ 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 D + F + F QL DYV + G +DGV+ DLGVSS Q+D +RGFSF + GP Sbjct: 67 FADDPR--FQIVHGGFGQLADYVEELGLVGKIDGVLLDLGVSSPQLDDAERGFSFMRDGP 124 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G +A+ + +A ++D+ + GEEK A IA I R PF T+DL Sbjct: 125 LDMRMDNSQGQTAAQWLARAEIEDMAWVFKTYGEEKNARHIARCIAADRDKTPFLRTKDL 184 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI + + N+ HPATR FQA+RI++N+E++++ Q L A L G L V+SFH Sbjct: 185 ADLIARITKSKERNK-HPATRVFQAIRIYINSELDQIDQALEGAVNVLAPQGRLSVISFH 243 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP---SNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SLEDR+VK+F R + +V H P + + K ++P+ E++ N R+RS Sbjct: 244 SLEDRIVKRFI-RRHSQGESVPHGFPVTEDQINKSRKLRAVGKAIMPSDEEIERNARARS 302 Query: 309 AKLRAGMR 316 + LR R Sbjct: 303 SVLRIAER 310 >gi|215485248|ref|YP_002327679.1| S-adenosyl-methyltransferase MraW [Escherichia coli O127:H6 str. E2348/69] gi|312966210|ref|ZP_07780436.1| S-adenosyl-methyltransferase MraW [Escherichia coli 2362-75] gi|263447451|sp|B7UID2|RSMH_ECO27 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|215263320|emb|CAS07635.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Escherichia coli O127:H6 str. E2348/69] gi|312289453|gb|EFR17347.1| S-adenosyl-methyltransferase MraW [Escherichia coli 2362-75] Length = 313 Score = 206 bits (525), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 125/311 (40%), Positives = 189/311 (60%), Gaps = 19/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + LN P + +D TFG GG+SR ++G ++A+DRDP A++ + Sbjct: 7 HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 T+ D + FS+ FS L +YV ++ +DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 66 TIDDPR--FSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G SA++ + A D+ +L GEE+ A RIA AIV+R + P T++L Sbjct: 124 LDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKEL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L +GG L ++SFH Sbjct: 184 AEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLASGGRLSIISFH 242 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306 SLEDR+VK+F SR +V A M +++ K ++P +E+VA N R+ Sbjct: 243 SLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGK--LMPGEEEVAENPRA 300 Query: 307 RSAKLRAGMRT 317 RS+ LR RT Sbjct: 301 RSSVLRIAERT 311 >gi|161504759|ref|YP_001571871.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|262826357|sp|A9MQD1|RSMH_SALAR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|160866106|gb|ABX22729.1| hypothetical protein SARI_02882 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 313 Score = 206 bits (525), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 124/309 (40%), Positives = 186/309 (60%), Gaps = 15/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + LN P + +D TFG GG+SR ++G ++A+DRDP A++ Q Sbjct: 7 HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAQ- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + D + FS+ FS L DYV ++ +DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 66 AINDPR--FSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G SA++ + A D+ +L GEE+ A RIA AIV+R + P T++L Sbjct: 124 LDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIARAIVERNREQPMTRTKEL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L ++SFH Sbjct: 184 AEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSIISFH 242 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSI-TKKVVVPTQEDVAFNRRSRS 308 SLEDR+VK+F SR +V A M + + + ++P +++VA N R+RS Sbjct: 243 SLEDRIVKRFMREQSRGPQVPAGLPMTEAQLKKLGGRELRVLGKLMPGEKEVAENPRARS 302 Query: 309 AKLRAGMRT 317 + LR RT Sbjct: 303 SVLRIAERT 311 >gi|116670123|ref|YP_831056.1| S-adenosyl-methyltransferase MraW [Arthrobacter sp. FB24] gi|263447796|sp|A0JV86|RSMH_ARTS2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|116610232|gb|ABK02956.1| S-adenosyl-methyltransferase MraW [Arthrobacter sp. FB24] Length = 332 Score = 206 bits (525), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 124/311 (39%), Positives = 185/311 (59%), Gaps = 19/311 (6%) Query: 20 HVPVLLEKVIALLNPAPG----------KVILDATFGAGGYSRSFCKMGSNV--IALDRD 67 HVPVL ++ I LL APG V++DAT G GG+S + + ++ I +DRD Sbjct: 14 HVPVLKDRCINLL--APGIEAARQRGETPVVIDATLGMGGHSEALLQRFPDLHLIGIDRD 71 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRG 124 A++ E ++ + ++ L A + ++ D + D GV GV+ DLGVSS+Q+D +RG Sbjct: 72 EEALALAGERLKPFADRTDLVHAVYDEIPDVLRDLGVSEVHGVLMDLGVSSLQLDERERG 131 Query: 125 FSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 F++ PLDMRM S G +A+DVVN + +DL RI+ GEEK A RIA+ IV R++ Sbjct: 132 FAYSFDAPLDMRMDTSRGQTAADVVNNYSEEDLVRIIRKWGEEKFAGRIANRIVAAREAK 191 Query: 184 PFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 PF TT +L I+ V + HPA R+FQALRI VN E++ L + + +A AL G Sbjct: 192 PFATTGELVDTIRAVVPAGAAKTGGHPAKRTFQALRIEVNEELDVLERAVPAAVDALAMG 251 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G ++V+S+HSLED++VKK F + S + + H +++TK VPT +++A Sbjct: 252 GRVVVMSYHSLEDKIVKKVFQTGSKSSAPLGFPVELEEHKPELKTLTKGTEVPTADEIAE 311 Query: 303 NRRSRSAKLRA 313 N R+ SA+LRA Sbjct: 312 NPRAASARLRA 322 >gi|296284506|ref|ZP_06862504.1| S-adenosyl-methyltransferase MraW [Citromicrobium bathyomarinum JL354] Length = 303 Score = 206 bits (525), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 125/296 (42%), Positives = 180/296 (60%), Gaps = 10/296 (3%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAV--SCGQETMRDYKEQF 85 ++A L P ++I+D TFGAGGY+R+ G+ V A DRDP A+ + G + + + Sbjct: 1 MVAALRPVQDELIVDGTFGAGGYTRALLDAGATVHAFDRDPTALENAQGWPELAETPPRL 60 Query: 86 SLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI 142 L + F+ + + ++G VDG+V D+GVSSMQ+D DRGFSF GPLDMRM Sbjct: 61 VLHRRAFADMAAALAEQGIARVDGIVLDIGVSSMQLDQADRGFSFAGDGPLDMRMDPDLP 120 Query: 143 SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS 202 SA+D +N A+ ++ ++ GEE+Q+ RIA AIV R P +TT L+ L++K Sbjct: 121 SAADFLNSADEAEIADVIYQYGEERQSRRIARAIVAAR---PLETTGQLARLVRKATGHK 177 Query: 203 KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF 262 +++ PATR+FQA+RI VN E+E+L L +AE+ L GG L+VVSFHSLEDR+VK+F Sbjct: 178 PHDKKDPATRTFQAIRIHVNGELEQLRGALAAAERLLAPGGRLVVVSFHSLEDRIVKRFM 237 Query: 263 ASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 SG+ RH+ + PA F + V + ++A N R+RSA LRA RT Sbjct: 238 RDASGQAGGGSRHLPLAETPPATFDKPLRAVRA-GEAELARNPRARSAILRAATRT 292 >gi|302389508|ref|YP_003825329.1| S-adenosyl-methyltransferase MraW [Thermosediminibacter oceani DSM 16646] gi|302200136|gb|ADL07706.1| S-adenosyl-methyltransferase MraW [Thermosediminibacter oceani DSM 16646] Length = 313 Score = 206 bits (525), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 127/308 (41%), Positives = 180/308 (58%), Gaps = 20/308 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGG-YSRSFCKMGSN--VIALDRDPFAVSCGQE 76 H PVLLE+ I LL+P PG V +DAT G GG +S ++G N VI +DRD AV +E Sbjct: 5 HKPVLLEETINLLDPKPGGVYVDATLGGGGHFSEILKRVGENGTVIGIDRDEDAVVNARE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ F ++ V +GVDGV+FDLGVSS Q+D RGFS+ K PL Sbjct: 65 RF-SQSPAATIVHDNFKNIKRIVYSLGLEGVDGVIFDLGVSSYQLDEESRGFSYIKDAPL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + ++A DVVN+ +L +I+ GEE+ A RIA I ++R+ P +TT +L Sbjct: 124 DMRMDRNQDLTAKDVVNKMTKSELAKIIKEYGEERWADRIAEFICEKRKKKPIETTGELV 183 Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + ++ HPA R+FQALRI+VN E+E L+ L+ A L GG + V++FH Sbjct: 184 EIIKAAIPARARRGGPHPAKRTFQALRIYVNGELEILSASLKDAVDILNPGGRICVITFH 243 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS------ITKKVVVPTQEDVAFNRR 305 SLEDR+VK F + +A P ++ +S +T K V PTQ+++ N R Sbjct: 244 SLEDRIVKHTF-----RELAKGCTCPKDSPLCTCKSERALKILTPKPVCPTQDEIDANPR 298 Query: 306 SRSAKLRA 313 +RSAKLRA Sbjct: 299 ARSAKLRA 306 >gi|324008349|gb|EGB77568.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 57-2] Length = 313 Score = 206 bits (525), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 125/311 (40%), Positives = 188/311 (60%), Gaps = 19/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + LN P + +D TFG GG+SR ++G ++A+DRDP A++ + Sbjct: 7 HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 T+ D + FS+ FS L +YV ++ +DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 66 TIDDRR--FSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G SA++ + A D+ +L GEE+ A RIA AIV+R + P T++L Sbjct: 124 LDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKEL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L ++SFH Sbjct: 184 AEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISFH 242 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306 SLEDR+VK+F SR +V A M +++ K ++P +E+VA N R+ Sbjct: 243 SLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGK--LMPGEEEVAENPRA 300 Query: 307 RSAKLRAGMRT 317 RS+ LR RT Sbjct: 301 RSSVLRIAERT 311 >gi|227885013|ref|ZP_04002818.1| S-adenosyl-methyltransferase MraW [Escherichia coli 83972] gi|301048472|ref|ZP_07195498.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 185-1] gi|227837842|gb|EEJ48308.1| S-adenosyl-methyltransferase MraW [Escherichia coli 83972] gi|300299686|gb|EFJ56071.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 185-1] gi|307551926|gb|ADN44701.1| S-adenosyl-dependent methyltransferase MraW [Escherichia coli ABU 83972] Length = 313 Score = 206 bits (525), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 126/311 (40%), Positives = 188/311 (60%), Gaps = 19/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + LN P + +D TFG GG+SR ++G ++A+DRDP A++ + Sbjct: 7 HFTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 T+ D + FS+ FS L +YV D+ +DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 66 TIDDPR--FSIIHGPFSALGEYVADRDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G SA++ + A D+ +L GEE+ A RIA AIV+R + P T++L Sbjct: 124 LDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKEL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L ++SFH Sbjct: 184 AEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLHVLAPGGRLSIISFH 242 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306 SLEDR+VK+F SR +V A M +++ K ++P +E+VA N R+ Sbjct: 243 SLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGK--LMPGEEEVAENPRA 300 Query: 307 RSAKLRAGMRT 317 RS+ LR RT Sbjct: 301 RSSVLRIAERT 311 >gi|317046889|ref|YP_004114537.1| S-adenosyl-methyltransferase MraW [Pantoea sp. At-9b] gi|316948506|gb|ADU67981.1| S-adenosyl-methyltransferase MraW [Pantoea sp. At-9b] Length = 313 Score = 206 bits (525), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 129/309 (41%), Positives = 186/309 (60%), Gaps = 15/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + LN + +D TFG GG+SR ++G+N ++A+DRDP A++ E Sbjct: 7 HTTVLLDEAVNALNIREDGIYIDGTFGRGGHSRLILAQLGANGQLLAIDRDPQAIAAAAE 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 ++D + FS+ FS L +YV ++G +DGV+ DLGVSS Q+D +RGFSF + GP Sbjct: 67 -IKDSR--FSIVHGPFSALAEYVSERGLNGKIDGVLLDLGVSSPQLDDAERGFSFMRDGP 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G SA++ + A D+ +L GEE+ A RIA AIV+R + P T++L Sbjct: 124 LDMRMDPTRGQSAAEWLLSAEEADIAFVLKTYGEERFAKRIARAIVERNREQPMTRTKEL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +I K+ HPATRSFQA+RI++N+E+EE+ L+ A L GG L V+SFH Sbjct: 184 AEVIAAATPV-KDKFKHPATRSFQAIRIWINSELEEIDIALKGALSVLAPGGRLSVISFH 242 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSI-TKKVVVPTQEDVAFNRRSRS 308 SLEDRLVK+F SR +V A M + + + T +VP +VA N R+RS Sbjct: 243 SLEDRLVKRFMRDQSRGPQVPAGIPMTETQLKALGGRELKTLGKMVPGDAEVADNPRARS 302 Query: 309 AKLRAGMRT 317 + LR RT Sbjct: 303 SVLRIAERT 311 >gi|311085963|gb|ADP66045.1| S-adenosyl-methyltransferase MraW [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] Length = 302 Score = 206 bits (525), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 116/285 (40%), Positives = 180/285 (63%), Gaps = 15/285 (5%) Query: 39 VILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95 + +D+TFG GG+S K + ++DRDP A S G + ++D +F + FS+L Sbjct: 16 IYIDSTFGTGGHSNEILKKLGQSGRLYSIDRDPIAFSIGSK-IKD--SRFHIINENFSKL 72 Query: 96 QDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQ 150 D+ ++ V+G++FDLGVSS+QID RGFSF+ GPLDMRM+ + GISAS+ + + Sbjct: 73 LDFAKNEKIIGKVNGIIFDLGVSSIQIDDYRRGFSFKNDGPLDMRMNPNYGISASEWLFE 132 Query: 151 ANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPA 210 +N+K+++ +L GEE+ + +IA+AI +R Q +T +L+++I+KT+ +KN HPA Sbjct: 133 SNIKEISFVLKNFGEERFSRKIAYAIKRRSQIKKITSTLELANIIKKTIP-TKNKFKHPA 191 Query: 211 TRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVM 270 RSFQA+RI++N E+EE+ + L S K LK GG + ++SFHSLEDRLVKKF S K + Sbjct: 192 RRSFQAIRIYINQELEEIQKALESTLKILKPGGRISIISFHSLEDRLVKKFMIKNSTKAI 251 Query: 271 AVRHMIPSNAHPAVFQSITKKV---VVPTQEDVAFNRRSRSAKLR 312 M + + K+ ++PTQ ++ N R+RS+ LR Sbjct: 252 IPYGMPITEEQLNRLTTCKLKIINRILPTQNEINNNPRARSSVLR 296 >gi|94676738|ref|YP_588954.1| S-adenosyl-methyltransferase MraW [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|263445957|sp|Q1LSW0|RSMH_BAUCH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|94219888|gb|ABF14047.1| S-adenosyl-methyltransferase MraW [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 317 Score = 206 bits (525), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 122/310 (39%), Positives = 189/310 (60%), Gaps = 24/310 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQE 76 H+PVLL + + LN + +D TFG GG+SR K+G+ ++A+DRDP A++ G+ Sbjct: 8 HIPVLLNEAVTALNIKKDGIYIDGTFGRGGHSRLILSKLGNKGRLLAIDRDPAAIAAGRN 67 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F++ Q FS + DY+ + +DG++ DLG+SS Q+ DRGFSF+ +G Sbjct: 68 I---HDLRFTIVQRPFSTIADYIAELNLIGCIDGILLDLGISSPQLADPDRGFSFRHNGK 124 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + GISA + + QA+V+++T +L GEE+ A RI+ AI + + +T +L Sbjct: 125 LDMRMDTTCGISAREWLKQASVQEMTWVLQHFGEERFAKRISQAIFHQNRRRLITSTSEL 184 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI V +S ++ HPATRSFQA+RI++NNE++E+ Q L SA L GG L+V+SFH Sbjct: 185 AKLITTIVPWSNKHK-HPATRSFQAIRIYINNELKEIEQVLNSALNILAIGGKLVVISFH 243 Query: 252 SLEDRLVKKFFASRS-------GKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAF 302 SLEDRLVK F S G + + + + N H +++ K + P+ +++ Sbjct: 244 SLEDRLVKYFINKHSKLPLPPTGISLTEKQIADLYKNRH-LTLKNLGK--IRPSIQEIKV 300 Query: 303 NRRSRSAKLR 312 N R+RSA LR Sbjct: 301 NPRARSALLR 310 >gi|58038635|ref|YP_190599.1| SAM-dependent methytransferase [Gluconobacter oxydans 621H] gi|68565412|sp|Q5FUK3|RSMH_GLUOX RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|58001049|gb|AAW59943.1| SAM-dependent methytransferase [Gluconobacter oxydans 621H] Length = 323 Score = 206 bits (524), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 132/303 (43%), Positives = 173/303 (57%), Gaps = 15/303 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI-ALDRDPFAVSCGQETM 78 HVPV+L +V+ L+P G LD TFG GGY+R+ + A+DRDP A+ G Sbjct: 11 HVPVMLHEVLEALSPRAGGRYLDGTFGGGGYARAILNAADCTLDAIDRDPAAIERGNAMA 70 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 + + Q TF ++ +G DG+V DLGVSS QID +RGFSF+ GPLDMRM Sbjct: 71 VQANGRLRMHQGTFGDMEALAGAEGPFDGIVLDLGVSSFQIDQAERGFSFRNDGPLDMRM 130 Query: 138 SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK 197 G SA+D+VN +L IL GEEK + RIA AIV R AP TT L+ +I+ Sbjct: 131 GSDGPSAADLVNTCKEAELADILYRYGEEKLSRRIARAIVAARAEAPITTTGQLAHIIRC 190 Query: 198 TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRL 257 V + N I PATRSFQ LRI VN+E+ EL + L +A + L GG+ +VV+FHSLEDRL Sbjct: 191 CVPRDRAN-IDPATRSFQGLRIAVNDELGELERALEAAPRLLAPGGIFVVVTFHSLEDRL 249 Query: 258 VKKFFASRSGKVMAVRHMIPSNAHPA-------VFQSITKKVVVPTQEDVAFNRRSRSAK 310 K+ A V+A R PS PA F + + + T E+ N R+RSA+ Sbjct: 250 AKRAMA-----VLAGRTGNPSRYEPAPLRQEAPAFSLLYSRPLSATDEESRENPRARSAR 304 Query: 311 LRA 313 LRA Sbjct: 305 LRA 307 >gi|15799766|ref|NP_285778.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 EDL933] gi|15829340|ref|NP_308113.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. Sakai] gi|16128075|ref|NP_414624.1| 16S rRNA m(4)C1402 methyltranserfase, SAM-dependent [Escherichia coli str. K-12 substr. MG1655] gi|82542686|ref|YP_406633.1| S-adenosyl-methyltransferase MraW [Shigella boydii Sb227] gi|89106965|ref|AP_000745.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Escherichia coli str. K-12 substr. W3110] gi|91209146|ref|YP_539132.1| S-adenosyl-methyltransferase MraW [Escherichia coli UTI89] gi|110640295|ref|YP_668023.1| S-adenosyl-methyltransferase MraW [Escherichia coli 536] gi|157154775|ref|YP_001461252.1| S-adenosyl-methyltransferase MraW [Escherichia coli E24377A] gi|157159553|ref|YP_001456871.1| S-adenosyl-methyltransferase MraW [Escherichia coli HS] gi|168751408|ref|ZP_02776430.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4113] gi|168755690|ref|ZP_02780697.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4401] gi|168764039|ref|ZP_02789046.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4501] gi|168771306|ref|ZP_02796313.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4486] gi|168776926|ref|ZP_02801933.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4196] gi|168781967|ref|ZP_02806974.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4076] gi|168789609|ref|ZP_02814616.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC869] gi|168801509|ref|ZP_02826516.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC508] gi|170021562|ref|YP_001726516.1| S-adenosyl-methyltransferase MraW [Escherichia coli ATCC 8739] gi|170079721|ref|YP_001729041.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Escherichia coli str. K-12 substr. DH10B] gi|170679711|ref|YP_001742204.1| S-adenosyl-methyltransferase MraW [Escherichia coli SMS-3-5] gi|187731396|ref|YP_001878892.1| S-adenosyl-methyltransferase MraW [Shigella boydii CDC 3083-94] gi|188494231|ref|ZP_03001501.1| S-adenosyl-methyltransferase MraW [Escherichia coli 53638] gi|191167757|ref|ZP_03029564.1| S-adenosyl-methyltransferase MraW [Escherichia coli B7A] gi|191174644|ref|ZP_03036126.1| S-adenosyl-methyltransferase MraW [Escherichia coli F11] gi|193065897|ref|ZP_03046958.1| S-adenosyl-methyltransferase MraW [Escherichia coli E22] gi|193070829|ref|ZP_03051762.1| S-adenosyl-methyltransferase MraW [Escherichia coli E110019] gi|194429383|ref|ZP_03061908.1| S-adenosyl-methyltransferase MraW [Escherichia coli B171] gi|194439418|ref|ZP_03071495.1| S-adenosyl-methyltransferase MraW [Escherichia coli 101-1] gi|195939298|ref|ZP_03084680.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4024] gi|208807673|ref|ZP_03250010.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4206] gi|208812612|ref|ZP_03253941.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4045] gi|208821818|ref|ZP_03262138.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4042] gi|209400403|ref|YP_002268690.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4115] gi|209917275|ref|YP_002291359.1| S-adenosyl-methyltransferase MraW [Escherichia coli SE11] gi|217324681|ref|ZP_03440765.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. TW14588] gi|218547539|ref|YP_002381330.1| S-adenosyl-methyltransferase MraW [Escherichia fergusonii ATCC 35469] gi|218552665|ref|YP_002385578.1| S-adenosyl-methyltransferase MraW [Escherichia coli IAI1] gi|218557022|ref|YP_002389935.1| S-adenosyl-methyltransferase MraW [Escherichia coli S88] gi|218693551|ref|YP_002401218.1| S-adenosyl-methyltransferase MraW [Escherichia coli 55989] gi|218703342|ref|YP_002410861.1| S-adenosyl-methyltransferase MraW [Escherichia coli UMN026] gi|237704231|ref|ZP_04534712.1| S-adenosyl-methyltransferase MraW [Escherichia sp. 3_2_53FAA] gi|238899483|ref|YP_002925279.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Escherichia coli BW2952] gi|253774888|ref|YP_003037719.1| S-adenosyl-methyltransferase MraW [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254037497|ref|ZP_04871574.1| S-adenosyl-methyltransferase MraW [Escherichia sp. 1_1_43] gi|254160204|ref|YP_003043312.1| S-adenosyl-methyltransferase MraW [Escherichia coli B str. REL606] gi|254791219|ref|YP_003076056.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. TW14359] gi|256020080|ref|ZP_05433945.1| S-adenosyl-methyltransferase MraW [Shigella sp. D9] gi|256025396|ref|ZP_05439261.1| S-adenosyl-methyltransferase MraW [Escherichia sp. 4_1_40B] gi|260842318|ref|YP_003220096.1| S-adenosyl-dependent methyltransferase [Escherichia coli O103:H2 str. 12009] gi|260853295|ref|YP_003227186.1| S-adenosyl-dependent methyltransferase [Escherichia coli O26:H11 str. 11368] gi|260866235|ref|YP_003232637.1| S-adenosyl-dependent methyltransferase [Escherichia coli O111:H- str. 11128] gi|261226839|ref|ZP_05941120.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. FRIK2000] gi|261255243|ref|ZP_05947776.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. FRIK966] gi|291280907|ref|YP_003497725.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Escherichia coli O55:H7 str. CB9615] gi|293403154|ref|ZP_06647251.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Escherichia coli FVEC1412] gi|293408175|ref|ZP_06652015.1| S-adenosyl-methyltransferase MraW [Escherichia coli B354] gi|293417958|ref|ZP_06660580.1| S-adenosyl-methyltransferase MraW [Escherichia coli B185] gi|293476742|ref|ZP_06665150.1| S-adenosyl-methyltransferase MraW [Escherichia coli B088] gi|297516902|ref|ZP_06935288.1| S-adenosyl-methyltransferase MraW [Escherichia coli OP50] gi|298378684|ref|ZP_06988568.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Escherichia coli FVEC1302] gi|300816120|ref|ZP_07096343.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 107-1] gi|300821913|ref|ZP_07102057.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 119-7] gi|300900887|ref|ZP_07119024.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 198-1] gi|300905491|ref|ZP_07123255.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 84-1] gi|300919637|ref|ZP_07136128.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 115-1] gi|300923135|ref|ZP_07139195.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 182-1] gi|300931791|ref|ZP_07147091.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 187-1] gi|300938477|ref|ZP_07153217.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 21-1] gi|300949900|ref|ZP_07163863.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 116-1] gi|300955948|ref|ZP_07168281.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 175-1] gi|300984504|ref|ZP_07176996.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 200-1] gi|301028563|ref|ZP_07191794.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 196-1] gi|301303818|ref|ZP_07209938.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 124-1] gi|301330140|ref|ZP_07222807.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 78-1] gi|301646394|ref|ZP_07246276.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 146-1] gi|306815320|ref|ZP_07449469.1| S-adenosyl-methyltransferase MraW [Escherichia coli NC101] gi|307136683|ref|ZP_07496039.1| S-adenosyl-methyltransferase MraW [Escherichia coli H736] gi|307311467|ref|ZP_07591109.1| S-adenosyl-methyltransferase MraW [Escherichia coli W] gi|309796072|ref|ZP_07690484.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 145-7] gi|312970176|ref|ZP_07784358.1| S-adenosyl-methyltransferase MraW [Escherichia coli 1827-70] gi|331661128|ref|ZP_08362060.1| S-adenosyl-methyltransferase MraW [Escherichia coli TA206] gi|331661456|ref|ZP_08362380.1| S-adenosyl-methyltransferase MraW [Escherichia coli TA143] gi|331666319|ref|ZP_08367200.1| S-adenosyl-methyltransferase MraW [Escherichia coli TA271] gi|331681467|ref|ZP_08382104.1| S-adenosyl-methyltransferase MraW [Escherichia coli H299] gi|332281230|ref|ZP_08393643.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Shigella sp. D9] gi|42559423|sp|P60391|RSMH_ECO57 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|42560200|sp|P60390|RSMH_ECOLI RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|88909217|sp|Q326F3|RSMH_SHIBS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|122425027|sp|Q1RGB3|RSMH_ECOUT RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|122958600|sp|Q0TLQ7|RSMH_ECOL5 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262826583|sp|B2U287|RSMH_SHIB3 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446391|sp|A7ZHH3|RSMH_ECO24 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446421|sp|B7LFV2|RSMH_ECO55 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446425|sp|B5YZB8|RSMH_ECO5E RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446445|sp|B7M125|RSMH_ECO8A RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446449|sp|C5W331|RSMH_ECOBB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446457|sp|C6UM45|RSMH_ECOBR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446461|sp|C4ZQ04|RSMH_ECOBW RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446465|sp|B1XC59|RSMH_ECODH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446468|sp|A7ZW34|RSMH_ECOHS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446964|sp|B1IR96|RSMH_ECOLC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446972|sp|B7N7V5|RSMH_ECOLU RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446978|sp|B6HZ59|RSMH_ECOSE RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446983|sp|B1LG19|RSMH_ECOSM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263447462|sp|B7MAK5|RSMH_ECO45 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263447500|sp|B7LWH0|RSMH_ESCF3 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263447897|sp|A1A7C7|RSMH_ECOK1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|12512785|gb|AAG54386.1|AE005185_3 putative apolipoprotein [Escherichia coli O157:H7 str. EDL933] gi|40850|emb|CAA38859.1| unnamed protein product [Escherichia coli] gi|42318|emb|CAA36283.1| unnamed protein product [Escherichia coli str. K-12 substr. W3110] gi|1786270|gb|AAC73193.1| 16S rRNA m(4)C1402 methyltranserfase, SAM-dependent [Escherichia coli str. K-12 substr. MG1655] gi|13359542|dbj|BAB33509.1| putative apolipoprotein [Escherichia coli O157:H7 str. Sakai] gi|21321963|dbj|BAB96650.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Escherichia coli str. K12 substr. W3110] gi|81244097|gb|ABB64805.1| putative apolipoprotein [Shigella boydii Sb227] gi|91070720|gb|ABE05601.1| S-adenosyl-dependent methyltransferase MraW [Escherichia coli UTI89] gi|110341887|gb|ABG68124.1| S-adenosyl-methyltransferase MraW [Escherichia coli 536] gi|157065233|gb|ABV04488.1| S-adenosyl-methyltransferase MraW [Escherichia coli HS] gi|157076805|gb|ABV16513.1| S-adenosyl-methyltransferase MraW [Escherichia coli E24377A] gi|169756490|gb|ACA79189.1| S-adenosyl-methyltransferase MraW [Escherichia coli ATCC 8739] gi|169887556|gb|ACB01263.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Escherichia coli str. K-12 substr. DH10B] gi|170517429|gb|ACB15607.1| S-adenosyl-methyltransferase MraW [Escherichia coli SMS-3-5] gi|187428388|gb|ACD07662.1| S-adenosyl-methyltransferase MraW [Shigella boydii CDC 3083-94] gi|187767771|gb|EDU31615.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4196] gi|188014531|gb|EDU52653.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4113] gi|188489430|gb|EDU64533.1| S-adenosyl-methyltransferase MraW [Escherichia coli 53638] gi|189000502|gb|EDU69488.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4076] gi|189356993|gb|EDU75412.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4401] gi|189359899|gb|EDU78318.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4486] gi|189365898|gb|EDU84314.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4501] gi|189370778|gb|EDU89194.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC869] gi|189376342|gb|EDU94758.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC508] gi|190902183|gb|EDV61925.1| S-adenosyl-methyltransferase MraW [Escherichia coli B7A] gi|190905079|gb|EDV64736.1| S-adenosyl-methyltransferase MraW [Escherichia coli F11] gi|192926484|gb|EDV81117.1| S-adenosyl-methyltransferase MraW [Escherichia coli E22] gi|192955859|gb|EDV86329.1| S-adenosyl-methyltransferase MraW [Escherichia coli E110019] gi|194412603|gb|EDX28900.1| S-adenosyl-methyltransferase MraW [Escherichia coli B171] gi|194421677|gb|EDX37687.1| S-adenosyl-methyltransferase MraW [Escherichia coli 101-1] gi|208727474|gb|EDZ77075.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4206] gi|208733889|gb|EDZ82576.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4045] gi|208741941|gb|EDZ89623.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4042] gi|209161803|gb|ACI39236.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4115] gi|209746626|gb|ACI71620.1| putative apolipoprotein [Escherichia coli] gi|209746628|gb|ACI71621.1| putative apolipoprotein [Escherichia coli] gi|209746630|gb|ACI71622.1| putative apolipoprotein [Escherichia coli] gi|209746632|gb|ACI71623.1| putative apolipoprotein [Escherichia coli] gi|209910534|dbj|BAG75608.1| S-adenosyl-methyltransferase [Escherichia coli SE11] gi|217320902|gb|EEC29326.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. TW14588] gi|218350283|emb|CAU95966.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Escherichia coli 55989] gi|218355080|emb|CAQ87687.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Escherichia fergusonii ATCC 35469] gi|218359433|emb|CAQ96971.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Escherichia coli IAI1] gi|218363791|emb|CAR01451.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Escherichia coli S88] gi|218430439|emb|CAR11305.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Escherichia coli UMN026] gi|226840603|gb|EEH72605.1| S-adenosyl-methyltransferase MraW [Escherichia sp. 1_1_43] gi|226902143|gb|EEH88402.1| S-adenosyl-methyltransferase MraW [Escherichia sp. 3_2_53FAA] gi|238863507|gb|ACR65505.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Escherichia coli BW2952] gi|242375918|emb|CAQ30599.1| 16S rRNA m[4]C1402 methyltransferase [Escherichia coli BL21(DE3)] gi|253325932|gb|ACT30534.1| S-adenosyl-methyltransferase MraW [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972105|gb|ACT37776.1| S-adenosyl-methyltransferase [Escherichia coli B str. REL606] gi|253976314|gb|ACT41984.1| S-adenosyl-methyltransferase [Escherichia coli BL21(DE3)] gi|254590619|gb|ACT69980.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Escherichia coli O157:H7 str. TW14359] gi|257751944|dbj|BAI23446.1| S-adenosyl-dependent methyltransferase [Escherichia coli O26:H11 str. 11368] gi|257757465|dbj|BAI28962.1| S-adenosyl-dependent methyltransferase [Escherichia coli O103:H2 str. 12009] gi|257762591|dbj|BAI34086.1| S-adenosyl-dependent methyltransferase [Escherichia coli O111:H- str. 11128] gi|260450711|gb|ACX41133.1| S-adenosyl-methyltransferase MraW [Escherichia coli DH1] gi|281177302|dbj|BAI53632.1| S-adenosyl-methyltransferase [Escherichia coli SE15] gi|290760780|gb|ADD54741.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Escherichia coli O55:H7 str. CB9615] gi|291321195|gb|EFE60637.1| S-adenosyl-methyltransferase MraW [Escherichia coli B088] gi|291430069|gb|EFF03083.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Escherichia coli FVEC1412] gi|291430676|gb|EFF03674.1| S-adenosyl-methyltransferase MraW [Escherichia coli B185] gi|291472426|gb|EFF14908.1| S-adenosyl-methyltransferase MraW [Escherichia coli B354] gi|294492092|gb|ADE90848.1| S-adenosyl-methyltransferase MraW [Escherichia coli IHE3034] gi|298281018|gb|EFI22519.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Escherichia coli FVEC1302] gi|299878407|gb|EFI86618.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 196-1] gi|300306673|gb|EFJ61193.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 200-1] gi|300317168|gb|EFJ66952.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 175-1] gi|300355651|gb|EFJ71521.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 198-1] gi|300402641|gb|EFJ86179.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 84-1] gi|300413277|gb|EFJ96587.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 115-1] gi|300420590|gb|EFK03901.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 182-1] gi|300450732|gb|EFK14352.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 116-1] gi|300456546|gb|EFK20039.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 21-1] gi|300460451|gb|EFK23944.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 187-1] gi|300525513|gb|EFK46582.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 119-7] gi|300531327|gb|EFK52389.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 107-1] gi|300840945|gb|EFK68705.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 124-1] gi|300843845|gb|EFK71605.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 78-1] gi|301075364|gb|EFK90170.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 146-1] gi|305850982|gb|EFM51437.1| S-adenosyl-methyltransferase MraW [Escherichia coli NC101] gi|306908446|gb|EFN38944.1| S-adenosyl-methyltransferase MraW [Escherichia coli W] gi|307629656|gb|ADN73960.1| S-adenosyl-methyltransferase MraW [Escherichia coli UM146] gi|308120314|gb|EFO57576.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 145-7] gi|309700293|emb|CBI99581.1| S-adenosyl-L-methionine-dependent methyltransferase [Escherichia coli ETEC H10407] gi|310337674|gb|EFQ02785.1| S-adenosyl-methyltransferase MraW [Escherichia coli 1827-70] gi|315059305|gb|ADT73632.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Escherichia coli W] gi|315134776|dbj|BAJ41935.1| S-adenosyl-methyltransferase MraW [Escherichia coli DH1] gi|315253156|gb|EFU33124.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 85-1] gi|315285172|gb|EFU44617.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 110-3] gi|315300017|gb|EFU59255.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 16-3] gi|315616139|gb|EFU96758.1| S-adenosyl-methyltransferase MraW [Escherichia coli 3431] gi|320172827|gb|EFW48059.1| rRNA small subunit methyltransferase H [Shigella dysenteriae CDC 74-1112] gi|320183631|gb|EFW58474.1| rRNA small subunit methyltransferase H [Shigella flexneri CDC 796-83] gi|320190395|gb|EFW65045.1| rRNA small subunit methyltransferase H [Escherichia coli O157:H7 str. EC1212] gi|320197467|gb|EFW72081.1| rRNA small subunit methyltransferase H [Escherichia coli WV_060327] gi|320200399|gb|EFW74985.1| rRNA small subunit methyltransferase H [Escherichia coli EC4100B] gi|320642121|gb|EFX11472.1| 16S rRNA m(4)C1402 methyltranserfase [Escherichia coli O157:H7 str. G5101] gi|320658207|gb|EFX25936.1| 16S rRNA m(4)C1402 methyltranserfase [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320663516|gb|EFX30800.1| 16S rRNA m(4)C1402 methyltranserfase [Escherichia coli O55:H7 str. USDA 5905] gi|320668828|gb|EFX35623.1| 16S rRNA m(4)C1402 methyltranserfase [Escherichia coli O157:H7 str. LSU-61] gi|323157851|gb|EFZ43954.1| S-adenosyl-methyltransferase MraW [Escherichia coli EPECa14] gi|323160120|gb|EFZ46081.1| S-adenosyl-methyltransferase MraW [Escherichia coli E128010] gi|323176390|gb|EFZ61982.1| S-adenosyl-methyltransferase MraW [Escherichia coli 1180] gi|323181779|gb|EFZ67192.1| S-adenosyl-methyltransferase MraW [Escherichia coli 1357] gi|323190236|gb|EFZ75512.1| S-adenosyl-methyltransferase MraW [Escherichia coli RN587/1] gi|323380137|gb|ADX52405.1| S-adenosyl-methyltransferase MraW [Escherichia coli KO11] gi|323935134|gb|EGB31501.1| S-adenosyl-methyltransferase MraW [Escherichia coli E1520] gi|323939878|gb|EGB36078.1| S-adenosyl-methyltransferase MraW [Escherichia coli E482] gi|323945711|gb|EGB41759.1| S-adenosyl-methyltransferase MraW [Escherichia coli H120] gi|323950922|gb|EGB46799.1| S-adenosyl-methyltransferase MraW [Escherichia coli H252] gi|323955280|gb|EGB51053.1| S-adenosyl-methyltransferase MraW [Escherichia coli H263] gi|323960028|gb|EGB55674.1| S-adenosyl-methyltransferase MraW [Escherichia coli H489] gi|323964822|gb|EGB60289.1| S-adenosyl-methyltransferase MraW [Escherichia coli M863] gi|323970754|gb|EGB66008.1| S-adenosyl-methyltransferase MraW [Escherichia coli TA007] gi|323975754|gb|EGB70850.1| S-adenosyl-methyltransferase MraW [Escherichia coli TW10509] gi|324012284|gb|EGB81503.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 60-1] gi|324017757|gb|EGB86976.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 117-3] gi|324112505|gb|EGC06482.1| S-adenosyl-methyltransferase MraW [Escherichia fergusonii B253] gi|324118432|gb|EGC12326.1| S-adenosyl-methyltransferase MraW [Escherichia coli E1167] gi|325496018|gb|EGC93877.1| S-adenosyl-methyltransferase MraW [Escherichia fergusonii ECD227] gi|326345198|gb|EGD68941.1| rRNA small subunit methyltransferase H [Escherichia coli O157:H7 str. 1125] gi|326346948|gb|EGD70682.1| rRNA small subunit methyltransferase H [Escherichia coli O157:H7 str. 1044] gi|327255060|gb|EGE66663.1| S-adenosyl-methyltransferase MraW [Escherichia coli STEC_7v] gi|330909929|gb|EGH38439.1| rRNA small subunit methyltransferase H [Escherichia coli AA86] gi|331052170|gb|EGI24209.1| S-adenosyl-methyltransferase MraW [Escherichia coli TA206] gi|331061371|gb|EGI33334.1| S-adenosyl-methyltransferase MraW [Escherichia coli TA143] gi|331066530|gb|EGI38407.1| S-adenosyl-methyltransferase MraW [Escherichia coli TA271] gi|331081688|gb|EGI52849.1| S-adenosyl-methyltransferase MraW [Escherichia coli H299] gi|332095373|gb|EGJ00396.1| S-adenosyl-methyltransferase MraW [Shigella boydii 5216-82] gi|332098926|gb|EGJ03877.1| S-adenosyl-methyltransferase MraW [Shigella boydii 3594-74] gi|332103582|gb|EGJ06928.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Shigella sp. D9] gi|332341414|gb|AEE54748.1| S-adenosyl-methyltransferase MraW [Escherichia coli UMNK88] gi|333010578|gb|EGK30011.1| S-adenosyl-methyltransferase MraW [Shigella flexneri VA-6] gi|333011470|gb|EGK30884.1| S-adenosyl-methyltransferase MraW [Shigella flexneri K-272] gi|333021712|gb|EGK40961.1| S-adenosyl-methyltransferase MraW [Shigella flexneri K-227] Length = 313 Score = 206 bits (524), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 125/311 (40%), Positives = 188/311 (60%), Gaps = 19/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + LN P + +D TFG GG+SR ++G ++A+DRDP A++ + Sbjct: 7 HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 T+ D + FS+ FS L +YV ++ +DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 66 TIDDPR--FSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G SA++ + A D+ +L GEE+ A RIA AIV+R + P T++L Sbjct: 124 LDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKEL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L ++SFH Sbjct: 184 AEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISFH 242 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306 SLEDR+VK+F SR +V A M +++ K ++P +E+VA N R+ Sbjct: 243 SLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGK--LMPGEEEVAENPRA 300 Query: 307 RSAKLRAGMRT 317 RS+ LR RT Sbjct: 301 RSSVLRIAERT 311 >gi|170768458|ref|ZP_02902911.1| S-adenosyl-methyltransferase MraW [Escherichia albertii TW07627] gi|170122562|gb|EDS91493.1| S-adenosyl-methyltransferase MraW [Escherichia albertii TW07627] Length = 313 Score = 206 bits (524), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 126/311 (40%), Positives = 186/311 (59%), Gaps = 19/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H VLL++ + LN P + +D TFG GG+SR S ++A+DRDP A++ + Sbjct: 7 HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLSEEGRLLAIDRDPQAIAVAK- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 T+ D + FS+ FS L +YV ++ +DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 66 TIDDPR--FSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G SA++ + A D+ +L GEE+ A RIA AIV+R + P T++L Sbjct: 124 LDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKEL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L V+SFH Sbjct: 184 AEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSVISFH 242 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306 SLEDR+VK+F SR +V A M +++ K ++P +E+VA N R+ Sbjct: 243 SLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGK--LMPGEEEVAENPRA 300 Query: 307 RSAKLRAGMRT 317 RS+ LR RT Sbjct: 301 RSSVLRIAERT 311 >gi|326795778|ref|YP_004313598.1| ribosomal RNA small subunit methyltransferase H [Marinomonas mediterranea MMB-1] gi|326546542|gb|ADZ91762.1| Ribosomal RNA small subunit methyltransferase H [Marinomonas mediterranea MMB-1] Length = 312 Score = 206 bits (524), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 118/316 (37%), Positives = 188/316 (59%), Gaps = 13/316 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKM-GSNVIALDR 66 M+S+ H +H+ V+L++ + +L +D TFG GG++R K+ ++ D+ Sbjct: 1 MTSSEH----EHISVMLDESVEMLVTNESGQYVDGTFGRGGHTRLVLSKLRDGKLLGFDK 56 Query: 67 DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP----DKGVDGVVFDLGVSSMQIDCGD 122 DP A+ G++ + +F + Q +F+ + D++P + +DG++ DLGVSS Q+D + Sbjct: 57 DPVAIEFGRK-LEAEDSRFEIVQDSFANMLDHIPAVFGTEKIDGIMMDLGVSSPQLDDAE 115 Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF GPLDMRM+ G+SA++ + A K++ ++ GEE+ + RIA AI ++R Sbjct: 116 RGFSFMNDGPLDMRMNPDQGMSAAEWIAVAAEKEIADVMYQYGEERFSRRIAKAICEKRL 175 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 AP TT LS ++ + + + +PATR+FQ +RI++NNE+ +L +GL A +LK Sbjct: 176 EAPITTTAQLSKIVAEANPAWEKGK-NPATRAFQGIRIYINNELGDLEKGLEVAADSLKV 234 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 GG L+V+SFHSLEDR+VK+F S RH+ NAH + K P++++V Sbjct: 235 GGRLVVISFHSLEDRIVKRFMKKMSKGPDLPRHLPIQNAHLDIKFKTVGKATKPSKDEVT 294 Query: 302 FNRRSRSAKLRAGMRT 317 N RSRSA LR RT Sbjct: 295 SNVRSRSAVLRVLERT 310 >gi|284919862|emb|CBG32917.1| S-adenosyl-L-methionine-dependent methyltransferase [Escherichia coli 042] Length = 312 Score = 206 bits (524), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 125/311 (40%), Positives = 188/311 (60%), Gaps = 19/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + LN P + +D TFG GG+SR ++G ++A+DRDP A++ + Sbjct: 6 HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK- 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 T+ D + FS+ FS L +YV ++ +DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 65 TIDDPR--FSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 122 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G SA++ + A D+ +L GEE+ A RIA AIV+R + P T++L Sbjct: 123 LDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKEL 182 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L ++SFH Sbjct: 183 AEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISFH 241 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306 SLEDR+VK+F SR +V A M +++ K ++P +E+VA N R+ Sbjct: 242 SLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGK--LMPGEEEVAENPRA 299 Query: 307 RSAKLRAGMRT 317 RS+ LR RT Sbjct: 300 RSSVLRIAERT 310 >gi|15615138|ref|NP_243441.1| hypothetical protein BH2575 [Bacillus halodurans C-125] gi|20139210|sp|Q9K9S0|RSMH_BACHD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|10175196|dbj|BAB06294.1| BH2575 [Bacillus halodurans C-125] Length = 310 Score = 206 bits (524), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 118/304 (38%), Positives = 184/304 (60%), Gaps = 11/304 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 +HV VL + + LN P + +D T G G+S+ K G ++ A D+D +A+S + Sbjct: 3 EHVTVLKNESVIGLNIKPDGIYVDCTLGGAGHSQEIVKQLTGGGHLYAFDQDQYALSHAK 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 ET+ Y+ F+L ++ F +++ + + GV DGV+FDLGVSS Q+D +RGFS+ + P Sbjct: 63 ETLSPYRGSFTLIESNFRYMREKLEELGVHHVDGVLFDLGVSSPQLDEDERGFSYHRDAP 122 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ S +SA +VVNQ + +L +I+ GEE+ A +IA I + R+ P +TT +L Sbjct: 123 LDMRMNRSQSLSAYEVVNQWDFIELMKIISRYGEERFAKQIARKIEQSREKKPIRTTGEL 182 Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I++ + ++ HPA R+FQA+RI VN+E+ + L +A G + V++F Sbjct: 183 VDIIKEAIPAPARRTGGHPAKRTFQAIRIAVNDELGAFEEALEAAIDLTAPKGRICVITF 242 Query: 251 HSLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 HSLEDR+ K+ F AS+ V +IP + A + ITKK +VPT E++ N R+RS Sbjct: 243 HSLEDRICKEMFREASKGPDVPPGLPVIPEE-YKATLKLITKKPIVPTAEEIELNNRARS 301 Query: 309 AKLR 312 AKLR Sbjct: 302 AKLR 305 >gi|21220572|ref|NP_626351.1| S-adenosyl-methyltransferase MraW [Streptomyces coelicolor A3(2)] gi|289772183|ref|ZP_06531561.1| methylase MraW [Streptomyces lividans TK24] gi|20139275|sp|Q9S2W4|RSMH_STRCO RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|5689964|emb|CAB52001.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)] gi|289702382|gb|EFD69811.1| methylase MraW [Streptomyces lividans TK24] Length = 310 Score = 206 bits (523), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 119/307 (38%), Positives = 182/307 (59%), Gaps = 10/307 (3%) Query: 23 VLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77 ++L++ + LL PA PG V++D T G GG+S + + + ++ALDRD A+ E Sbjct: 1 MMLQRCLDLLAPALQEPGAVVVDCTLGLGGHSEALLERFPEARLVALDRDKEALRLSGER 60 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + Y + +L A + +L D + GV GV+FDLGVSSMQ+D DRGF++ + PLD Sbjct: 61 LAPYGGRATLVHAVYDELPDVLDRLGVPRVQGVLFDLGVSSMQLDEADRGFAYAQDAPLD 120 Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM S G+SA++V+N +L RIL GEEKQA RI A+V+ R+ PF + L Sbjct: 121 MRMDQSTGMSAAEVLNTYPPGELVRILRAYGEEKQAKRIVSAVVREREKEPFTNSARLVE 180 Query: 194 LIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 LI+ + +K +PA R+FQALRI VN E+ L + + +A +++ GG + V+S+HS Sbjct: 181 LIRAALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVESVAVGGRIAVLSYHS 240 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDRLVK+ FA+ + + + + +T+ +PT+E++A NRR+ A+LR Sbjct: 241 LEDRLVKQVFAAGAANTAPPGLPVVPEQYAPRLKLLTRGAELPTEEEIAENRRAAPARLR 300 Query: 313 AGMRTVE 319 R E Sbjct: 301 GAERIRE 307 >gi|148265993|ref|YP_001232699.1| S-adenosyl-methyltransferase MraW [Geobacter uraniireducens Rf4] gi|146399493|gb|ABQ28126.1| S-adenosyl-methyltransferase MraW [Geobacter uraniireducens Rf4] Length = 303 Score = 206 bits (523), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 127/298 (42%), Positives = 176/298 (59%), Gaps = 13/298 (4%) Query: 27 KVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETMRDYKE 83 +VI L P G + +D T G GG++R + + +I DRD A++ E + Y E Sbjct: 4 EVIQYLAPRAGGIYVDGTLGGGGHARQILEASAPDGLLIGFDRDREAIAIAAERLAPYGE 63 Query: 84 QFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS 140 + L Q F+ L + + + G+D G + D+GVSS Q+D RGFSFQ PLDMRM S Sbjct: 64 RVRLVQRNFACLAETLDEMGIDAIDGFLLDVGVSSHQLDTAARGFSFQHDAPLDMRMDVS 123 Query: 141 -GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199 G SASD+VN + DL RI+ GEE+ A RIA IVKRR+ +P +TT L +I+ V Sbjct: 124 SGQSASDLVNTLSEADLARIIWDYGEERWAKRIAAFIVKRREESPIETTMQLVDVIKGAV 183 Query: 200 -YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258 + + R+HPATR+FQALRI VN+E+ L + L + + LK GG +V+SFHSLEDR+V Sbjct: 184 PRGAWDVRLHPATRTFQALRIAVNDELASLEKALAAGVRFLKKGGRGVVISFHSLEDRIV 243 Query: 259 KKFFASRSGKVMAVRHMIP---SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 K F S + + IP P V + IT K V+ + +V+ N RSRSA+LRA Sbjct: 244 KTSFRSFAQGCTCPKS-IPRCVCGKLPLV-KVITGKPVMANEAEVSMNPRSRSARLRA 299 >gi|184155045|ref|YP_001843385.1| cell division protein [Lactobacillus fermentum IFO 3956] gi|227514829|ref|ZP_03944878.1| S-adenosyl-methyltransferase [Lactobacillus fermentum ATCC 14931] gi|260663589|ref|ZP_05864478.1| methylase MraW [Lactobacillus fermentum 28-3-CHN] gi|263458139|sp|B2GB73|RSMH_LACF3 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|183226389|dbj|BAG26905.1| cell division protein [Lactobacillus fermentum IFO 3956] gi|227086819|gb|EEI22131.1| S-adenosyl-methyltransferase [Lactobacillus fermentum ATCC 14931] gi|260551815|gb|EEX24930.1| methylase MraW [Lactobacillus fermentum 28-3-CHN] Length = 314 Score = 206 bits (523), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 125/305 (40%), Positives = 182/305 (59%), Gaps = 12/305 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76 +HV VLL + +A L P V +DAT G GG+S K ++ + D+D A+ Q Sbjct: 5 NHVTVLLHEAVAGLAIQPAGVYVDATLGGGGHSGEILKQLTSGHLYSFDQDETAIHYNQA 64 Query: 77 TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + E+ +L Q F L+ + D+GV DG+V+DLGVSS Q D RGFS+Q Sbjct: 65 NLGPAIEEGKLTLMQTNFRNLKQALADQGVTAIDGIVYDLGVSSPQFDDAKRGFSYQHDA 124 Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ +SA VVN+ + ++L RIL GEEK A +IA AI + RQ P QTT + Sbjct: 125 PLDMRMNQDQPLSAYQVVNEWSYQELVRILYRYGEEKFAKQIARAIERARQKQPIQTTME 184 Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L++++++ + ++ + HPA +SFQA+RI VN+E+ L L A LK GG + V++ Sbjct: 185 LANIVKEAIPAAARRHGGHPAKKSFQAIRIAVNDELGALEDSLEQALALLKVGGRISVIT 244 Query: 250 FHSLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 F SLEDRLVK F A+ + +IP++A P F+ I KK V+PT++++ N R+ Sbjct: 245 FQSLEDRLVKTMFKEATSLPDLPPGLPVIPADAQPD-FKLINKKPVLPTEDELKVNHRAH 303 Query: 308 SAKLR 312 SAKLR Sbjct: 304 SAKLR 308 >gi|209746624|gb|ACI71619.1| putative apolipoprotein [Escherichia coli] gi|320647484|gb|EFX16279.1| 16S rRNA m(4)C1402 methyltranserfase [Escherichia coli O157:H- str. 493-89] gi|320652818|gb|EFX21056.1| 16S rRNA m(4)C1402 methyltranserfase [Escherichia coli O157:H- str. H 2687] Length = 313 Score = 206 bits (523), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 125/311 (40%), Positives = 188/311 (60%), Gaps = 19/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + LN P + +D TFG GG+SR ++G ++A+DRDP A++ + Sbjct: 7 HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 T+ D + FS+ FS L +YV ++ +DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 66 TIDDPR--FSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G SA++ + A D+ +L GEE+ A RIA AIV+R + P T++L Sbjct: 124 LDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNRKQPMTRTKEL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L ++SFH Sbjct: 184 AEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISFH 242 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306 SLEDR+VK+F SR +V A M +++ K ++P +E+VA N R+ Sbjct: 243 SLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGK--LMPGEEEVAENPRA 300 Query: 307 RSAKLRAGMRT 317 RS+ LR RT Sbjct: 301 RSSVLRIAERT 311 >gi|221133797|ref|ZP_03560102.1| S-adenosyl-methyltransferase MraW [Glaciecola sp. HTCC2999] Length = 310 Score = 206 bits (523), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 125/305 (40%), Positives = 181/305 (59%), Gaps = 17/305 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76 H VLL + I L P + +DATFG GG+S +G + +IA DRDP A+ Q+ Sbjct: 6 HTSVLLHECIEGLAIKPDGIYIDATFGRGGHSSYILNALGEHGRLIAFDRDPAAIEAAQK 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG-----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + D + F++ + F+Q+ D VP VDGV+ DLGVSS Q+D RGFSF + G Sbjct: 66 FVNDPR--FTIVHSAFAQM-DEVPLTAGLIDQVDGVLMDLGVSSPQLDDSSRGFSFLRDG 122 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S G+SA + A+ +D+ +++ GEEK RIAHAIV R P +T Sbjct: 123 PLDMRMDTSTGVSAEQWLAHADEQDIAQVIKEFGEEKFGKRIAHAIVNTRVHTPINSTLQ 182 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+++I + + K+ HPATR+FQ +RI++N+E+++L GL++A K LK G L +SF Sbjct: 183 LAAIIAEAMPV-KDKHKHPATRAFQGIRIYINSELDQLRDGLKAAVKLLKPTGRLAAISF 241 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIP---SNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 HSLEDR+VK+F +S K V H +P + + K + P+ E+V+ N RSR Sbjct: 242 HSLEDRMVKRFMREQS-KGKNVPHNMPILQAEIDADKVLKLIGKAIKPSDEEVSNNPRSR 300 Query: 308 SAKLR 312 S+ LR Sbjct: 301 SSVLR 305 >gi|66769818|ref|YP_244580.1| S-adenosyl-methyltransferase MraW [Xanthomonas campestris pv. campestris str. 8004] gi|81304228|sp|Q4UQW3|RSMH_XANC8 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|66575150|gb|AAY50560.1| cell division protein [Xanthomonas campestris pv. campestris str. 8004] Length = 342 Score = 206 bits (523), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 134/326 (41%), Positives = 180/326 (55%), Gaps = 15/326 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HVPVL +V+ L LD TFG GG++R + G ++ +D+DP AV+ Q Sbjct: 8 HVPVLYTQVLEGLQVTENGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDPEAVAVSQH 67 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 T + S+ +F++L V VDG++ DLGVSS Q+D RGFSF K GPLDMR Sbjct: 68 TF-GGDARVSIHPGSFARLVQVVAAATVDGILLDLGVSSPQLDVAGRGFSFGKDGPLDMR 126 Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M SG SA+ + QA +++ +L GEE+Q+ RIA AIV RR P T L+ LI Sbjct: 127 MDPDSGQSAAGWLAQATDREIADVLWTYGEERQSRRIARAIVARRGEQPLLRTAQLADLI 186 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 +V +++ HPATRSFQA+RI +N E+ +L GL +A ALK GG L V+SFHSLED Sbjct: 187 -ASVMPRGDSKTHPATRSFQAIRIHINRELADLEAGLDAALGALKPGGRLAVISFHSLED 245 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 R+VK+F A R K +P A P V Q ++ + E +A N R+RSA LR Sbjct: 246 RIVKQFMA-RYAKAPPSNRRLP-EAQPFVPTLQLVSGAIKADDSE-LAVNPRARSAVLRV 302 Query: 314 ----GMRTVERSIEDDSFVHLPRLPT 335 GM E + R PT Sbjct: 303 AEKLGMENRESGMGKGHGAAASRFPT 328 >gi|237807292|ref|YP_002891732.1| S-adenosyl-methyltransferase MraW [Tolumonas auensis DSM 9187] gi|262825943|sp|C4LA17|RSMH_TOLAT RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|237499553|gb|ACQ92146.1| S-adenosyl-methyltransferase MraW [Tolumonas auensis DSM 9187] Length = 308 Score = 206 bits (523), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 122/308 (39%), Positives = 181/308 (58%), Gaps = 14/308 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MG--SNVIALDRDPFAVSCGQ 75 +H+ VLL++ + L P + +D TFG GG+SR + +G + A+DRDP AV+ + Sbjct: 2 EHITVLLQEAVDGLAIRPDGIYVDGTFGRGGHSRLILQQLGPQGRLYAIDRDPQAVAVAK 61 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E +F + FS L +Y+ ++G VDG++ DLGVSS Q+D +RGFSF G Sbjct: 62 EWQ---DPRFEIISGPFSSLHEYMAERGLLGKVDGLLLDLGVSSPQLDEAERGFSFMNDG 118 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM G SA++ + A+V D+ +L GEE+ A+RIA AIV R + P+ T+ Sbjct: 119 PLDMRMDPLHGESAAEWLLHADVDDIAWVLRTYGEERFANRIARAIVADRVTTPYTRTRQ 178 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ +I + V +K HPATRSFQALRI VN E++E+ + L+++ L GG L V+SF Sbjct: 179 LAEMIARVVP-NKEKHKHPATRSFQALRIHVNQELKEIEETLKASLSVLAPGGRLAVISF 237 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI--TKKVVVPTQEDVAFNRRSRS 308 HSLEDR+VK+F + + R + + Q++ K + P +V+ N RSRS Sbjct: 238 HSLEDRIVKQFIRQQEKGIQPPRGLPITEDQIRKTQTLHSVGKAIKPADSEVSDNVRSRS 297 Query: 309 AKLRAGMR 316 + LR R Sbjct: 298 SVLRVAER 305 >gi|256788289|ref|ZP_05526720.1| hypothetical protein SlivT_27704 [Streptomyces lividans TK24] Length = 309 Score = 206 bits (523), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 119/306 (38%), Positives = 181/306 (59%), Gaps = 10/306 (3%) Query: 24 LLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETM 78 +L++ + LL PA PG V++D T G GG+S + + + ++ALDRD A+ E + Sbjct: 1 MLQRCLDLLAPALQEPGAVVVDCTLGLGGHSEALLERFPEARLVALDRDKEALRLSGERL 60 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 Y + +L A + +L D + GV GV+FDLGVSSMQ+D DRGF++ + PLDM Sbjct: 61 APYGGRATLVHAVYDELPDVLDRLGVPRVQGVLFDLGVSSMQLDEADRGFAYAQDAPLDM 120 Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM S G+SA++V+N +L RIL GEEKQA RI A+V+ R+ PF + L L Sbjct: 121 RMDQSTGMSAAEVLNTYPPGELVRILRAYGEEKQAKRIVSAVVREREKEPFTNSARLVEL 180 Query: 195 IQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 I+ + +K +PA R+FQALRI VN E+ L + + +A +++ GG + V+S+HSL Sbjct: 181 IRAALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVESVAVGGRIAVLSYHSL 240 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 EDRLVK+ FA+ + + + + +T+ +PT+E++A NRR+ A+LR Sbjct: 241 EDRLVKQVFAAGAANTAPPGLPVVPEQYAPRLKLLTRGAELPTEEEIAENRRAAPARLRG 300 Query: 314 GMRTVE 319 R E Sbjct: 301 AERIRE 306 >gi|82775489|ref|YP_401836.1| S-adenosyl-methyltransferase MraW [Shigella dysenteriae Sd197] gi|309787242|ref|ZP_07681854.1| S-adenosyl-methyltransferase MraW [Shigella dysenteriae 1617] gi|88909218|sp|Q32K10|RSMH_SHIDS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|81239637|gb|ABB60347.1| putative apolipoprotein [Shigella dysenteriae Sd197] gi|308924820|gb|EFP70315.1| S-adenosyl-methyltransferase MraW [Shigella dysenteriae 1617] Length = 313 Score = 206 bits (523), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 125/311 (40%), Positives = 188/311 (60%), Gaps = 19/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + LN P + +D TFG GG+SR ++G ++A+DRDP A++ + Sbjct: 7 HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 T+ D + FS+ FS L +YV ++ +DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 66 TIDDPR--FSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G SA++ + A D+ +L GEE+ A RIA AIV+R + P T++L Sbjct: 124 LDMRMDPTCGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKEL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L ++SFH Sbjct: 184 AEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISFH 242 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306 SLEDR+VK+F SR +V A M +++ K ++P +E+VA N R+ Sbjct: 243 SLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGK--LMPGEEEVAENPRA 300 Query: 307 RSAKLRAGMRT 317 RS+ LR RT Sbjct: 301 RSSVLRIAERT 311 >gi|50122745|ref|YP_051912.1| S-adenosyl-methyltransferase MraW [Pectobacterium atrosepticum SCRI1043] gi|54036180|sp|Q6D0H5|RSMH_ERWCT RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|49613271|emb|CAG76722.1| S-adenosyl-methyltransferase [Pectobacterium atrosepticum SCRI1043] Length = 314 Score = 206 bits (523), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 125/309 (40%), Positives = 186/309 (60%), Gaps = 16/309 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + LN G + +D TFG GG+SR ++G ++A+DRDP A+ + Sbjct: 7 HTTVLLDEAVNGLNIRSGGIYIDGTFGRGGHSRLILSQLGPEGRLLAIDRDPQAIEAAK- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + D + FS+ FS + DYV + G +DGV+ DLGVSS Q+D +RGFSF + GP Sbjct: 66 AIDDSR--FSIIHGPFSAMADYVAELGLTGQIDGVLLDLGVSSPQLDDPERGFSFMRDGP 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G SA++ + +A D+ +L GEE+ A RIA AIV+R ++ P T++L Sbjct: 124 LDMRMDPTRGSSAAEWLMKAEADDIVWVLKTFGEERFAKRIARAIVERNRTEPMTRTKEL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +SLI + ++ HPATRSFQA+RI++N+E+EE+ + L A L G L V+SFH Sbjct: 184 ASLIAAASPIREKHK-HPATRSFQAIRIYINSELEEIERALEGALSVLAPQGRLSVISFH 242 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITK--KVVVPTQEDVAFNRRSR 307 SLEDR+VK+F SR +V A + Q++ K ++P++ +VA N R+R Sbjct: 243 SLEDRIVKRFIRHQSRGPQVPAGLPLTEEQLRSQGGQTLKPVGKKLMPSEAEVAENPRAR 302 Query: 308 SAKLRAGMR 316 S+ LR R Sbjct: 303 SSVLRFAER 311 >gi|78356081|ref|YP_387530.1| S-adenosyl-methyltransferase MraW [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|88909199|sp|Q313R1|RSMH_DESDG RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|78218486|gb|ABB37835.1| methyltransferase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 325 Score = 206 bits (523), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 126/315 (40%), Positives = 176/315 (55%), Gaps = 15/315 (4%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAV 71 H HVPVLL++V+ L+P G LD T G GG+S + C + ++ LDRD A+ Sbjct: 12 HQYTAHVPVLLDEVLHYLSPVRGGRYLDGTLGLGGHSEAIMNRCGGDAWLLGLDRDREAL 71 Query: 72 SCGQETMRDYKEQFSLFQATFSQ---LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + + + ++ + A +SQ + D + G+DG + D+GVSSMQID RGFSF Sbjct: 72 AAASGRLAPFGDRVTTRYACYSQFAAIMDEIGWTGLDGALIDIGVSSMQIDTPSRGFSFY 131 Query: 129 KSGPLDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 GPLDMRM SG SA +VN +V+ L I+ GE+ A RIA AIV R P + Sbjct: 132 ADGPLDMRMDPSGDMPSAGVLVNTGSVERLKEIISTYGEDPMAGRIARAIVDARARNPIE 191 Query: 187 TTQDLSSLIQKT--VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 TT L+ +++ + +R HPATR+FQALR+ VN E+EEL L + + GG Sbjct: 192 TTARLAEVVESAYPAKWRAKSRNHPATRTFQALRMAVNGELEELETFLAAIVDRMNPGGR 251 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP---SNAHPAVFQSITKKVVVPTQEDVA 301 ++V++FHSLEDRLVK F + + RH IP P V +T+K V Q ++ Sbjct: 252 IVVITFHSLEDRLVKNAFRDEAKGCLCPRH-IPVCVCGKKPRV-NVLTRKPVTAGQAELQ 309 Query: 302 FNRRSRSAKLRAGMR 316 N R+ SAKLRA R Sbjct: 310 ANSRASSAKLRAAER 324 >gi|120597213|ref|YP_961787.1| S-adenosyl-methyltransferase MraW [Shewanella sp. W3-18-1] gi|146291586|ref|YP_001182010.1| S-adenosyl-methyltransferase MraW [Shewanella putrefaciens CN-32] gi|262826531|sp|A4Y2M8|RSMH_SHEPC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262826576|sp|A1REY8|RSMH_SHESW RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|120557306|gb|ABM23233.1| S-adenosyl-methyltransferase MraW [Shewanella sp. W3-18-1] gi|145563276|gb|ABP74211.1| S-adenosyl-methyltransferase MraW [Shewanella putrefaciens CN-32] Length = 313 Score = 206 bits (523), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 120/308 (38%), Positives = 177/308 (57%), Gaps = 15/308 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQE 76 H+ VLL + + LN + +D TFG GG+SR ++G N +IA+DRDP A+ ++ Sbjct: 7 HLSVLLAETVGGLNIKDDGIYIDGTFGRGGHSRQILQRLGDNGRLIAIDRDPQAIEAAKQ 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 D + F + F QL DYV D G +DGV+ DLGVSS Q+D +RGFSF + GP Sbjct: 67 FSDDPR--FQIVHGGFGQLADYVEDLGLVGKIDGVLLDLGVSSPQLDDAERGFSFLRDGP 124 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G +A+ + A ++D+ + GEEK A IA I R PF T+DL Sbjct: 125 LDMRMDNSQGQTAAQWLAHAEIEDMAWVFKTYGEEKNARHIARCIAADRDKTPFLRTKDL 184 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI + + N+ HPATR FQA+RI++N+E++++ Q L A L G L ++SFH Sbjct: 185 ADLIARITKNKERNK-HPATRVFQAIRIYINSELDQIDQALEGALAVLAPQGRLSIISFH 243 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP---SNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SLEDR+VK+F R + +V + +P + + K ++P+ E++ N R+RS Sbjct: 244 SLEDRIVKRFI-RRHSQGESVPYGLPITEDQINKSRKLRAIGKAIMPSDEEIERNARARS 302 Query: 309 AKLRAGMR 316 + LR R Sbjct: 303 SVLRIAER 310 >gi|308177867|ref|YP_003917273.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Arthrobacter arilaitensis Re117] gi|307745330|emb|CBT76302.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Arthrobacter arilaitensis Re117] Length = 330 Score = 206 bits (523), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 122/317 (38%), Positives = 185/317 (58%), Gaps = 15/317 (4%) Query: 20 HVPVLLEKVIALLNP------APGK--VILDATFGAGGYSRSFCKMGSNV--IALDRDPF 69 HVPVLL++ + LL P A G+ +++D T G GG+S + + N+ I LDRD Sbjct: 14 HVPVLLDRCVNLLAPGIERANAEGRRAIVVDCTLGMGGHSEAILQRFENLHLIGLDRDEQ 73 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFS 126 A + ++++ L A + ++ D V D G+DGV+FDLGVSS+Q+D +RGF+ Sbjct: 74 AHELAGARLAPFQDRIDLVHAVYDEIADVVEDLGFPGIDGVLFDLGVSSLQLDERERGFA 133 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 + PLDMRM S G +A D+VN + +L RI+ GEEK A RI+ AIV+ R + Sbjct: 134 YSYDAPLDMRMDTSVGPTAEDLVNDLDRDELLRIIRQWGEEKFAGRISTAIVEARAKSRI 193 Query: 186 QTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 TT +L +I+ V + N HPA R+FQALRI VN E++ L + + +A AL GG Sbjct: 194 STTAELVEVIRSVVPAAAARNHGHPAKRTFQALRIAVNEELDVLERAIPAAMGALNIGGR 253 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 ++V+S+HSLED++ K+ F S + H A ++ +TK P++ ++A N Sbjct: 254 VVVMSYHSLEDKITKRHFVQGSTSSAPPGFPVELEEHKAEYKVLTKGTEKPSEHEIAENS 313 Query: 305 RSRSAKLRAGMRTVERS 321 R+ SA+LRA R ++RS Sbjct: 314 RAASARLRAVERVLKRS 330 >gi|117622368|ref|YP_851281.1| S-adenosyl-methyltransferase MraW [Escherichia coli APEC O1] gi|331640535|ref|ZP_08341683.1| S-adenosyl-methyltransferase MraW [Escherichia coli H736] gi|331645192|ref|ZP_08346303.1| S-adenosyl-methyltransferase MraW [Escherichia coli M605] gi|331650979|ref|ZP_08352007.1| S-adenosyl-methyltransferase MraW [Escherichia coli M718] gi|331671601|ref|ZP_08372399.1| S-adenosyl-methyltransferase MraW [Escherichia coli TA280] gi|331680655|ref|ZP_08381314.1| S-adenosyl-methyltransferase MraW [Escherichia coli H591] gi|115511492|gb|ABI99566.1| S-adenosyl-methyltransferase [Escherichia coli APEC O1] gi|331040281|gb|EGI12488.1| S-adenosyl-methyltransferase MraW [Escherichia coli H736] gi|331045949|gb|EGI18068.1| S-adenosyl-methyltransferase MraW [Escherichia coli M605] gi|331051433|gb|EGI23482.1| S-adenosyl-methyltransferase MraW [Escherichia coli M718] gi|331071446|gb|EGI42803.1| S-adenosyl-methyltransferase MraW [Escherichia coli TA280] gi|331072118|gb|EGI43454.1| S-adenosyl-methyltransferase MraW [Escherichia coli H591] Length = 346 Score = 206 bits (523), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 125/311 (40%), Positives = 188/311 (60%), Gaps = 19/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + LN P + +D TFG GG+SR ++G ++A+DRDP A++ + Sbjct: 40 HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK- 98 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 T+ D + FS+ FS L +YV ++ +DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 99 TIDDPR--FSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 156 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G SA++ + A D+ +L GEE+ A RIA AIV+R + P T++L Sbjct: 157 LDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKEL 216 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L ++SFH Sbjct: 217 AEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISFH 275 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306 SLEDR+VK+F SR +V A M +++ K ++P +E+VA N R+ Sbjct: 276 SLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGK--LMPGEEEVAENPRA 333 Query: 307 RSAKLRAGMRT 317 RS+ LR RT Sbjct: 334 RSSVLRIAERT 344 >gi|15599616|ref|NP_253110.1| S-adenosyl-methyltransferase MraW [Pseudomonas aeruginosa PAO1] gi|107099995|ref|ZP_01363913.1| hypothetical protein PaerPA_01001016 [Pseudomonas aeruginosa PACS2] gi|254244769|ref|ZP_04938091.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|296391129|ref|ZP_06880604.1| S-adenosyl-methyltransferase MraW [Pseudomonas aeruginosa PAb1] gi|20139184|sp|Q9HVZ5|RSMH_PSEAE RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|9950652|gb|AAG07808.1|AE004856_19 conserved hypothetical protein [Pseudomonas aeruginosa PAO1] gi|126198147|gb|EAZ62210.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] Length = 313 Score = 205 bits (522), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 124/305 (40%), Positives = 185/305 (60%), Gaps = 16/305 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQE 76 H+ VLLE+ ++ L P LD TFG GG+SR+ + G ++ D+DP A+ G+ Sbjct: 7 HITVLLEEAVSALAPREDGCYLDGTFGRGGHSRALLEKLGAGGRLLGFDKDPQAIQTGK- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F + Q +F++L D V +G VDGV+ DLGVSS Q+D +RGFSF GP Sbjct: 66 ALAAEDGRFVIVQRSFAELGDEVRARGLEGRVDGVLLDLGVSSPQLDDPERGFSFLNDGP 125 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ GISA++ + A +++ R+ GEE+ A R+A AIV+RRQ PF+ T DL Sbjct: 126 LDMRMNPGQGISAAEFIANATEEEIARVFKEYGEERFAKRMARAIVQRRQERPFERTADL 185 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +I + + +PATR+FQ LRI VNNE+ +L +GL +A ++L GG L+V+SFH Sbjct: 186 AEVITVANPAWEKGK-NPATRAFQGLRIHVNNELGDLERGLDAALESLAVGGRLVVISFH 244 Query: 252 SLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVP---TQEDVAFNRRSR 307 SLEDR+VK F + G+ + +P + VF+ K + P ++E++ N RSR Sbjct: 245 SLEDRIVKLFMRKHAKGEADNLPRDLPIRSK--VFEPRLKLLGKPQYASEEELKANPRSR 302 Query: 308 SAKLR 312 SA +R Sbjct: 303 SAVMR 307 >gi|304310311|ref|YP_003809909.1| Methyltransferase involved in cell envelope biogenesis [gamma proteobacterium HdN1] gi|301796044|emb|CBL44248.1| Methyltransferase involved in cell envelope biogenesis [gamma proteobacterium HdN1] Length = 310 Score = 205 bits (522), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 122/301 (40%), Positives = 180/301 (59%), Gaps = 10/301 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPFAVSCGQE 76 H PVLL++VI L + +D TFG GG++R+ + ++ D+DP A++ G + Sbjct: 6 HRPVLLQEVIENLLTDTAGIYVDGTFGRGGHARALLARLSADARLVGFDKDPEAIAVGLQ 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +FS+ +F+++ G V GV+ DLGVSS Q+D RGFSF GP Sbjct: 66 LAAE-DARFSIVHGSFAEIGTRPELAGLQGTVSGVLLDLGVSSPQLDDASRGFSFMNDGP 124 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ +G SA+D +N + K + +L LGEE+ A RIA AIV +R+ +P TT+ L Sbjct: 125 LDMRMNNDAGESAADWLNHEDAKQIEWVLRELGEERFAGRIARAIVAQREMSPLCTTKQL 184 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI K V + ++ HPATRSFQA+RI+VN E+++L GL ++ + +K GG + V+SFH Sbjct: 185 ADLIYKAVPVREKHK-HPATRSFQAVRIWVNRELQDLEVGLAASLELVKVGGRIAVISFH 243 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+VK+FF R + + A + K V P+ ++VA N RSRSA L Sbjct: 244 SLEDRIVKQFFEKHVKGEQLPRGLPVTGAALGIRLRHVAKKVRPSDDEVAVNVRSRSATL 303 Query: 312 R 312 R Sbjct: 304 R 304 >gi|257791849|ref|YP_003182455.1| S-adenosyl-methyltransferase MraW [Eggerthella lenta DSM 2243] gi|257475746|gb|ACV56066.1| S-adenosyl-methyltransferase MraW [Eggerthella lenta DSM 2243] Length = 318 Score = 205 bits (522), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 120/313 (38%), Positives = 181/313 (57%), Gaps = 18/313 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H PVLL + + N P +DAT G G+S K+ G +I +D+D A++ + Sbjct: 7 HTPVLLAECLEYSNLKPQHTFVDATLGGAGHSFEAAKLIGSGGTLIGIDQDEVALAAARR 66 Query: 77 TM----RDYKEQFSLFQATFSQLQDY-----VPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 + D + + L + F + + VP GVD V+FDLGVSS+QID RGFSF Sbjct: 67 KLGTLPDDVRPRLELVRGNFGNMDEALLSTEVP--GVDAVLFDLGVSSVQIDTPSRGFSF 124 Query: 128 QKSGPLDMRMSCS--GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 +++GPLDMRM ++A++++N DLTRI+ +EK ASRIA V+ RQ+AP Sbjct: 125 KENGPLDMRMDPGKQTLTAAEIINTYTAADLTRIIRTYSDEKWASRIADFAVRARQTAPI 184 Query: 186 QTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 +T++ L +I+ + S + HPA R+FQALRI VN E++ L GL +A + L GG Sbjct: 185 ETSEQLVDIIKAAIPASARRAGGHPAKRTFQALRIEVNGELDVLRSGLDAAIRWLNPGGR 244 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFN 303 L+V+S+HSLEDR+VK+ FA + + + + + +T+K V+PT E++ N Sbjct: 245 LVVISYHSLEDRIVKETFAKFANRCTCPPDLPVCMCGKQPILDIVTRKPVLPTAEEIERN 304 Query: 304 RRSRSAKLRAGMR 316 R+RSAKLR + Sbjct: 305 ARARSAKLRVAQK 317 >gi|289826154|ref|ZP_06545266.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 279 Score = 205 bits (522), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 111/255 (43%), Positives = 164/255 (64%), Gaps = 12/255 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + LN P + +D TFG GG+SR ++G ++A+DRDP A++ Q Sbjct: 7 HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAQ- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 T+ D + FS+ FS L DYV ++ +DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 66 TINDPR--FSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G SA++ + A D+ +L GEE+ A RIAHAIV+R + P T++L Sbjct: 124 LDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIAHAIVERNREQPMTRTKEL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L +GG L ++SFH Sbjct: 184 AEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLASGGRLSIISFH 242 Query: 252 SLEDRLVKKFFASRS 266 SLEDR+VK+F +S Sbjct: 243 SLEDRIVKRFMREQS 257 >gi|222031913|emb|CAP74651.1| S-adenosyl-L-methionine-dependent methyltransferase [Escherichia coli LF82] gi|312944688|gb|ADR25515.1| S-adenosyl-methyltransferase MraW [Escherichia coli O83:H1 str. NRG 857C] Length = 313 Score = 205 bits (522), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 125/311 (40%), Positives = 188/311 (60%), Gaps = 19/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + LN P + +D TFG GG+SR ++G ++A+DRDP A++ + Sbjct: 7 HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 T+ D + FS+ FS L +YV ++ +DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 66 TIDDPR--FSIIYGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G SA++ + A D+ +L GEE+ A RIA AIV+R + P T++L Sbjct: 124 LDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKEL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L ++SFH Sbjct: 184 AEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISFH 242 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306 SLEDR+VK+F SR +V A M +++ K ++P +E+VA N R+ Sbjct: 243 SLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGK--LMPGEEEVAENPRA 300 Query: 307 RSAKLRAGMRT 317 RS+ LR RT Sbjct: 301 RSSVLRIAERT 311 >gi|74310701|ref|YP_309120.1| S-adenosyl-methyltransferase MraW [Shigella sonnei Ss046] gi|88909219|sp|Q3Z5S7|RSMH_SHISS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|73854178|gb|AAZ86885.1| putative apolipoprotein [Shigella sonnei Ss046] gi|323165965|gb|EFZ51745.1| S-adenosyl-methyltransferase MraW [Shigella sonnei 53G] Length = 313 Score = 205 bits (522), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 125/311 (40%), Positives = 188/311 (60%), Gaps = 19/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + LN P + +D TFG GG+SR ++G ++A+DRDP A++ + Sbjct: 7 HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 T+ D + FS+ FS L +YV ++ +DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 66 TIDDPR--FSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G SA++ + A D+ +L GEE+ A RIA AIV+R + P T++L Sbjct: 124 LDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKEL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L ++SFH Sbjct: 184 AEVVAVATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISFH 242 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306 SLEDR+VK+F SR +V A M +++ K ++P +E+VA N R+ Sbjct: 243 SLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGK--LMPGEEEVAENPRA 300 Query: 307 RSAKLRAGMRT 317 RS+ LR RT Sbjct: 301 RSSVLRIAERT 311 >gi|292489365|ref|YP_003532252.1| S-adenosyl methionine adenyltransferase [Erwinia amylovora CFBP1430] gi|292898411|ref|YP_003537780.1| S-adenosyl-methyltransferase [Erwinia amylovora ATCC 49946] gi|291198259|emb|CBJ45365.1| S-adenosyl-methyltransferase [Erwinia amylovora ATCC 49946] gi|291554799|emb|CBA22629.1| S-adenosyl methionine adenyltransferase [Erwinia amylovora CFBP1430] gi|312173530|emb|CBX81784.1| S-adenosyl methionine adenyltransferase [Erwinia amylovora ATCC BAA-2158] Length = 312 Score = 205 bits (522), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 126/313 (40%), Positives = 189/313 (60%), Gaps = 21/313 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + LN P + +D TFG GG+SR ++G + + A+DRDP A++ + Sbjct: 7 HTTVLLDEAVNALNIKPDGIYIDGTFGRGGHSRLILSQLGEHGRLYAIDRDPQAIAAAAD 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +F++ FS L +Y +G +DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 67 IT---DPRFTIIHGPFSALAEYAEQRGLTGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G SA++ + +A D+T +L GEE+ A RIA AIV+R + P T++L Sbjct: 124 LDMRMDPTRGQSAAEWLLKAEESDITFVLKTFGEERFARRIARAIVERNRQQPMTRTKEL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +I K+ HPATRSFQA+RI+VN+E+EE+ Q L+ A AL AGG L ++SFH Sbjct: 184 ADVIYAATPV-KDKFKHPATRSFQAIRIWVNSELEEIEQALKGALSALAAGGRLSIISFH 242 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP------SNAHPAVFQSITKKVVVPTQEDVAFNRR 305 SLEDR+VK+F +S + V H +P S+ +++ K ++P + +VA N R Sbjct: 243 SLEDRIVKRFMREQS-RGPQVPHGLPMTEAQLSSLGGRQLKALGK--MMPGESEVADNPR 299 Query: 306 SRSAKLRAGMRTV 318 +RS+ LR RT Sbjct: 300 ARSSVLRIAERTA 312 >gi|283850522|ref|ZP_06367810.1| S-adenosyl-methyltransferase MraW [Desulfovibrio sp. FW1012B] gi|283574093|gb|EFC22065.1| S-adenosyl-methyltransferase MraW [Desulfovibrio sp. FW1012B] Length = 325 Score = 205 bits (522), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 124/304 (40%), Positives = 176/304 (57%), Gaps = 11/304 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H+PVLL +V+ L PG ILDAT G GG+ + + ++V+ LDRD A+S Sbjct: 7 HIPVLLREVVEFLAIRPGMRILDATAGLGGHIKGMLEAAGGEASVLGLDRDREALSEAGR 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + Y ++ L + +S+ + + G VD + D G+SS+Q+D +RGF F GPL Sbjct: 67 RLEAYGDRVRLVRTRYSRFPAALAEAGWETVDAALLDAGMSSLQLDDPERGFGFLTDGPL 126 Query: 134 DMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 DMRM G SA +VN A+ L I+ GE+ QA RIA AIV R++AP TT+ L Sbjct: 127 DMRMGVEDGGESAEGLVNLASFARLREIIREYGEDPQAGRIARAIVAERETAPITTTRRL 186 Query: 192 SSLIQKT--VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 + ++ + R HPATR+FQALR+ VN+E+ EL + LR+ + GG + V+S Sbjct: 187 AEVVAAAYPAKWRAMARQHPATRTFQALRMAVNDELGELEEFLRAIPGHIAPGGRVAVIS 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPS-NAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDRLVK+ F + + R I H A F+ +TKK V+ +E+VA N R+RS Sbjct: 247 FHSLEDRLVKRAFRLEATDCLCPREQIVCVCGHRARFRILTKKPVMAGEEEVAANSRARS 306 Query: 309 AKLR 312 AKLR Sbjct: 307 AKLR 310 >gi|213647633|ref|ZP_03377686.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 293 Score = 205 bits (522), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 111/255 (43%), Positives = 164/255 (64%), Gaps = 12/255 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + LN P + +D TFG GG+SR ++G ++A+DRDP A++ Q Sbjct: 7 HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAQ- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 T+ D + FS+ FS L DYV ++ +DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 66 TINDPR--FSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G SA++ + A D+ +L GEE+ A RIAHAIV+R + P T++L Sbjct: 124 LDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIAHAIVERNREQPMTRTKEL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L +GG L ++SFH Sbjct: 184 AEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLASGGRLSIISFH 242 Query: 252 SLEDRLVKKFFASRS 266 SLEDR+VK+F +S Sbjct: 243 SLEDRIVKRFMREQS 257 >gi|49084936|gb|AAT51240.1| PA4420 [synthetic construct] Length = 314 Score = 205 bits (522), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 124/305 (40%), Positives = 185/305 (60%), Gaps = 16/305 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQE 76 H+ VLLE+ ++ L P LD TFG GG+SR+ + G ++ D+DP A+ G+ Sbjct: 7 HITVLLEEAVSALAPREDGCYLDGTFGRGGHSRALLEKLGAGGRLLGFDKDPQAIQTGK- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F + Q +F++L D V +G VDGV+ DLGVSS Q+D +RGFSF GP Sbjct: 66 ALAAEDGRFVIVQRSFAELGDEVRARGLEGRVDGVLLDLGVSSPQLDDPERGFSFLNDGP 125 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ GISA++ + A +++ R+ GEE+ A R+A AIV+RRQ PF+ T DL Sbjct: 126 LDMRMNPGQGISAAEFIANATEEEIARVFKEYGEERFAKRMARAIVQRRQERPFERTADL 185 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +I + + +PATR+FQ LRI VNNE+ +L +GL +A ++L GG L+V+SFH Sbjct: 186 AEVITVANPAWEKGK-NPATRAFQGLRIHVNNELGDLERGLDAALESLAVGGRLVVISFH 244 Query: 252 SLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVP---TQEDVAFNRRSR 307 SLEDR+VK F + G+ + +P + VF+ K + P ++E++ N RSR Sbjct: 245 SLEDRIVKLFMRKHAKGEADNLPRDLPIRSK--VFEPRLKLLGKPQYASEEELKANPRSR 302 Query: 308 SAKLR 312 SA +R Sbjct: 303 SAVMR 307 >gi|77361427|ref|YP_341002.1| S-adenosyl-methyltransferase MraW [Pseudoalteromonas haloplanktis TAC125] gi|88909212|sp|Q3IFZ6|RSMH_PSEHT RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|76876338|emb|CAI87560.1| S-adenosyl-dependent methyltransferase [Pseudoalteromonas haloplanktis TAC125] Length = 312 Score = 205 bits (522), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 124/310 (40%), Positives = 186/310 (60%), Gaps = 17/310 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYS-RSFCKMGSN--VIALDRDPFAVSCGQ 75 +HV VL+++ I L P + +D TFG GG+S + ++GS + A+D+DP A+ + Sbjct: 6 EHVSVLMDETIDALAIKPDGIYMDGTFGRGGHSGQILARLGSEGRLQAIDQDPQAIKSAE 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + D + F++ FS L VDG++ D+GVSS Q+D RGFSF K G Sbjct: 66 KFADDPR--FAIAHTRFSNLYGVAEQNDLIGKVDGILLDIGVSSPQLDDALRGFSFMKDG 123 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM +G SA+ + +A + D+T ++ LGEEK RIAH +++ R+ P TT+ Sbjct: 124 PLDMRMDPTTGRSAAQWLAEAELDDITHVIKKLGEEKFGKRIAHKVLEVREHTPITTTKQ 183 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ L+ + V K+ HPATR+FQA+RI++N+E+EE+ L+SA K LK GG L+V+SF Sbjct: 184 LADLVDEAVPV-KDKFKHPATRTFQAIRIYINSELEEIQTALQSAIKVLKPGGRLVVISF 242 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV----VPTQEDVAFNRRS 306 HSLEDR+VK+F +S R + ++A + Q++T K V P+ +V N RS Sbjct: 243 HSLEDRIVKQFIRKQSRGETLPRGLPLTDAQ--INQNLTLKAVGKAIKPSAAEVERNPRS 300 Query: 307 RSAKLRAGMR 316 RS+ LR R Sbjct: 301 RSSVLRIAQR 310 >gi|166710645|ref|ZP_02241852.1| S-adenosyl-methyltransferase MraW [Xanthomonas oryzae pv. oryzicola BLS256] Length = 347 Score = 205 bits (521), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 125/299 (41%), Positives = 175/299 (58%), Gaps = 11/299 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HVPVL +V+ L LD TFG GG++R + G ++ +D+DP A++ ++ Sbjct: 18 HVPVLYTQVLDGLQVTENGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDPEAIAVAEQ 77 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 T + S+ + +F+ L V VDG++ DLGVSS Q+D RGFSF K GPLDMR Sbjct: 78 TF-GGDARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLDVAGRGFSFGKDGPLDMR 136 Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M SG SA+ + QA +++ +L GEE+Q+ RIA AIV RR P T L+ LI Sbjct: 137 MDPDSGQSAAQWLAQATDREIADVLWTYGEERQSRRIARAIVARRAEQPLLRTAQLADLI 196 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 +V +++ HPATRSFQA+RI++N E+++L GL +A ALK GG L V+SFHSLED Sbjct: 197 -ASVMPRGDSKTHPATRSFQAIRIYINRELDDLETGLDAALAALKPGGRLAVISFHSLED 255 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRSAKLR 312 R+VK+F A R K +P A P V Q ++ + E + N R+RSA LR Sbjct: 256 RIVKQFMA-RYAKAPPSNRRLP-EAQPFVPTLQLVSGAIKADDAE-LNVNPRARSAVLR 311 >gi|319424760|gb|ADV52834.1| S-adenosyl-methyltransferase MraW [Shewanella putrefaciens 200] Length = 313 Score = 205 bits (521), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 120/308 (38%), Positives = 178/308 (57%), Gaps = 15/308 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQE 76 H+ VLL + + LN + +D TFG GG+SR ++G N +IA+DRDP A+ ++ Sbjct: 7 HLSVLLAETVGGLNIKDDGIYIDGTFGRGGHSRQILQRLGDNGRLIAIDRDPQAIEAAKQ 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 D + F + F QL DYV D G +DGV+ DLGVSS Q+D +RGFSF + GP Sbjct: 67 FSDDPR--FQIVHGGFGQLADYVEDLGLVGKIDGVLLDLGVSSPQLDDAERGFSFLRDGP 124 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G +A+ + +A ++D+ + GEEK A IA I R PF T+DL Sbjct: 125 LDMRMDNSQGQTAAQWLARAEIEDMAWVFKTYGEEKNARHIARCIAADRDKTPFLRTKDL 184 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI + + N+ HPATR FQA+RI++N+E++++ Q L A L G L ++SFH Sbjct: 185 ADLIVRITKNKERNK-HPATRVFQAIRIYINSELDQIDQALEGALAVLAPQGRLSIISFH 243 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP---SNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SLEDR+VK+F R + +V + +P + + K ++P+ E++ N R+RS Sbjct: 244 SLEDRIVKRFI-RRHSQGESVPYGLPITEDQINKSRKLRAIGKAIMPSDEEIERNARARS 302 Query: 309 AKLRAGMR 316 + LR R Sbjct: 303 SVLRIAER 310 >gi|263506507|sp|Q2NZB1|RSMH_XANOM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263506516|sp|B2SNY6|RSMH_XANOP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 337 Score = 205 bits (521), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 125/299 (41%), Positives = 175/299 (58%), Gaps = 11/299 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HVPVL +V+ L LD TFG GG++R + G ++ +D+DP A++ ++ Sbjct: 8 HVPVLYTQVLDGLQVTENGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDPDAIAVAEQ 67 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 T + S+ + +F+ L V VDG++ DLGVSS Q+D RGFSF K GPLDMR Sbjct: 68 TF-GGDARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLDVAGRGFSFGKDGPLDMR 126 Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M SG SA+ + QA +++ +L GEE+Q+ RIA AIV RR P T L+ LI Sbjct: 127 MDPDSGQSAAQWLAQATDREIADVLWAYGEERQSRRIARAIVARRAEQPLLRTAQLADLI 186 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 +V +++ HPATRSFQA+RI++N E+++L GL +A ALK GG L V+SFHSLED Sbjct: 187 -ASVMPRGDSKTHPATRSFQAIRIYINRELDDLETGLDAALAALKPGGRLAVISFHSLED 245 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRSAKLR 312 R+VK+F A R K +P A P V Q ++ + E + N R+RSA LR Sbjct: 246 RIVKQFMA-RYAKAPPSNRRLP-EAQPFVPTLQLVSGAIKADDTE-LNVNPRARSAVLR 301 >gi|20808080|ref|NP_623251.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter tengcongensis MB4] gi|254479532|ref|ZP_05092851.1| S-adenosyl-methyltransferase MraW [Carboxydibrachium pacificum DSM 12653] gi|21759279|sp|Q8R9F9|RSMH_THETN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|20516663|gb|AAM24855.1| predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Thermoanaerobacter tengcongensis MB4] gi|214034534|gb|EEB75289.1| S-adenosyl-methyltransferase MraW [Carboxydibrachium pacificum DSM 12653] Length = 308 Score = 205 bits (521), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 120/304 (39%), Positives = 177/304 (58%), Gaps = 8/304 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77 H VLL++ I LN P + +D T G GG+S K +IA+DRD A+ +E Sbjct: 5 HKSVLLKETIEHLNINPEGIYVDGTLGGGGHSEEILKRLTTGKLIAIDRDEEAILAAKER 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++DYK + + F +++ + + G VDG++ DLGVSS Q++ +RGFS+ K PLD Sbjct: 65 LKDYKNVIYI-KDNFKNIKEILRNLGIEKVDGILLDLGVSSYQLEEVERGFSYMKDAPLD 123 Query: 135 MRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM S SA DVVN+ + K+L R++ GEEK ASRIA IV+ R+ +TT L Sbjct: 124 MRMDKTSPFSAYDVVNRYSEKELERVIREYGEEKWASRIAKFIVEERKKGDIKTTSQLVE 183 Query: 194 LIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+K + S + HPA R+FQA+RI VN E+++L + L + L+ G + V++FHS Sbjct: 184 IIKKAIPASARRTGPHPAKRTFQAIRIEVNEELKDLDRALEDMVEVLRGKGRIAVITFHS 243 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK F + + V + ITKK ++P++E+V N RSRSAKLR Sbjct: 244 LEDRIVKNTFKKLENPCTCPPGLPCTCGKQPVIKIITKKPILPSKEEVEENPRSRSAKLR 303 Query: 313 AGMR 316 + Sbjct: 304 VAEK 307 >gi|332027021|gb|EGI67117.1| Putative S-adenosyl-L-methionine-dependent methyltransferase [Acromyrmex echinatior] Length = 325 Score = 205 bits (521), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 122/323 (37%), Positives = 182/323 (56%), Gaps = 30/323 (9%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQETMRDY 81 + ++V+ + P+PGK +D TFGAGG++ + N+ ALDRDP C ++ + Y Sbjct: 1 MAQEVLTYIAPSPGKTYIDMTFGAGGHATKLLEHSPNIKIFALDRDPLGFECAKQLSQRY 60 Query: 82 KEQFSLFQATFSQL----QDY-VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 Q FS+L + Y + + +DG++FD G SSMQ D RGFS K GPLDMR Sbjct: 61 PGQVIPLLGKFSELPQLLEPYNIKENSIDGILFDFGCSSMQFDTASRGFSLSKDGPLDMR 120 Query: 137 MS---C-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQTTQDL 191 M C ++A++V+ +A +DLTRI+ + G+EK+A +IA AI+ R +TT++L Sbjct: 121 MDGFRCPKQLTAANVLERATEEDLTRIIKVYGQEKRAKKIARAIIDSRYMFKKLETTKEL 180 Query: 192 SSLIQKTV-----YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 + LI+ T+ S H AT++FQALRIFVNNE+ E+ G+ A+ LK G LI Sbjct: 181 AQLIESTLDGEIRRDSLGRFSHSATKTFQALRIFVNNELNEINYGILLAQIYLKLSGCLI 240 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF-------------QSITKKVV 293 +SFHSLED +VK+ + +A + + F + + K V+ Sbjct: 241 TISFHSLEDTIVKRHISGNITDNVANTVALKYAHYGKTFDKDEFERLTKIPWKMMHKHVL 300 Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316 +PT E++ N RSRSAKLRA M+ Sbjct: 301 IPTAEEIETNPRSRSAKLRAIMK 323 >gi|326333502|ref|ZP_08199743.1| S-adenosyl-methyltransferase MraW [Nocardioidaceae bacterium Broad-1] gi|325948702|gb|EGD40801.1| S-adenosyl-methyltransferase MraW [Nocardioidaceae bacterium Broad-1] Length = 336 Score = 205 bits (521), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 124/312 (39%), Positives = 193/312 (61%), Gaps = 11/312 (3%) Query: 20 HVPVLLEKVIALLNPA--PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQ 75 HVPV+L++++ LL PA G V++D T G GG++ + + GS VI +DRD +A+ Sbjct: 11 HVPVMLDRIVDLLAPALADGGVLVDCTTGHGGHTEAVLERIPGSRVIGIDRDTYALGIAG 70 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + + ++++ A + ++ D V ++G+D V+FDLGVSSMQ+D +RGF++ + P Sbjct: 71 ERLARFGDRWTGVHAVYDEILDVVAEQGLDEVQAVLFDLGVSSMQLDQRERGFAYAEDAP 130 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G +A+DV+N + DLTRIL GEEK A +IAHA+VKRR+ PF T+ L Sbjct: 131 LDMRMDATRGQTAADVLNTYSAADLTRILRDYGEEKFAKKIAHAVVKRREKQPFTTSGPL 190 Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ + ++ HPA R+FQALR+ VN+E+ L L ++ +A+ GG ++V S+ Sbjct: 191 VELLYAEIPAPARRTGGHPAKRTFQALRMEVNDELGALRTALPASLEAVGVGGRVVVESY 250 Query: 251 HSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDRL K+ FA + V +P +A P+ F+ +T+ T+ ++ N R+ S Sbjct: 251 HSLEDRLTKRAFAEATKLDVPPDLPFVPPDAEPS-FRLLTRGAEQATEAEIEENPRAASV 309 Query: 310 KLRAGMRTVERS 321 +LRA R RS Sbjct: 310 RLRAVERVKPRS 321 >gi|312898967|ref|ZP_07758355.1| S-adenosyl-methyltransferase MraW [Megasphaera micronuciformis F0359] gi|310620129|gb|EFQ03701.1| S-adenosyl-methyltransferase MraW [Megasphaera micronuciformis F0359] Length = 310 Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 118/305 (38%), Positives = 174/305 (57%), Gaps = 8/305 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HV VL E+ I + P + +D T G GG+SR+ + +I LD+D A+ E Sbjct: 5 HVSVLREETIHAVLGDPAGIYVDCTLGGGGHSRALADLLVKDGLIIGLDQDEDAIRAATE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 M+D +F+ Q F L + + D VDG++FDLGVSS Q+D +RGFS+Q GPL Sbjct: 65 RMQDAPCRFTAVQRNFRYLGEVLDDLNIPTVDGIMFDLGVSSYQLDNPERGFSYQHDGPL 124 Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM G SA DV+N + DL RI+ GEE+ A RIA IVK R+ PF+ T++L Sbjct: 125 DMRMDRHGKKSAYDVINAYDEADLYRIIKDYGEERWAKRIASFIVKARREKPFERTEELV 184 Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I++ + ++ + HPA R+FQA+RI VN+E++ L A LK GG + +++FH Sbjct: 185 RVIKQAIPAGARKDGPHPAKRTFQAVRIEVNDELKILQDTFEIAANRLKPGGHIGIITFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+ K+ + + H+ H + K + P++E++ N R+RSAKL Sbjct: 245 SLEDRIAKQTLRKLATGCICPPHIPVCTCHHEAILKVKGKGIGPSKEELELNPRARSAKL 304 Query: 312 RAGMR 316 R G R Sbjct: 305 RVGTR 309 >gi|94501904|ref|ZP_01308414.1| S-adenosyl-methyltransferase [Oceanobacter sp. RED65] gi|94425957|gb|EAT10955.1| S-adenosyl-methyltransferase [Oceanobacter sp. RED65] Length = 308 Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 120/308 (38%), Positives = 182/308 (59%), Gaps = 12/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+ VLL + + LN P + +D TFG GG+++ S VI +D+DP A++ GQE Sbjct: 4 HITVLLHEAVEALNQDPDGLYVDCTFGRGGHTKLLLDQLSEQGRVIGIDKDPRAIATGQE 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 M ++F + +F+QL+++V G + GV+ DLGVSS Q+D +RGFSF + GP Sbjct: 64 LMAQ-DQRFQICHGSFAQLREFVEAHGQGKELSGVLMDLGVSSPQLDEAERGFSFMQDGP 122 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ +GI+A + + A+ +++ + GEE+ + R+A AIV+RR PF T DL Sbjct: 123 LDMRMNTEAGITAQEWIATASEEEIANVFYEFGEERASRRLARAIVERRAIEPFTRTLDL 182 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +I+ + N+ HPATRSFQ LRIF+NNE+ +L L + L GG L+V+SFH Sbjct: 183 AEVIKHAHPRWEKNK-HPATRSFQGLRIFLNNELGDLESVLDETVEMLAKGGRLVVISFH 241 Query: 252 SLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK+F + G + I P + I K + ++E+V N RSRSA Sbjct: 242 SLEDRIVKRFIRDKEKGPQLPPDLPIMEQDAPRPLKHIGKAIKA-SKEEVEQNVRSRSAI 300 Query: 311 LRAGMRTV 318 +R + + Sbjct: 301 MRVAEKRI 308 >gi|332768872|gb|EGJ99051.1| S-adenosyl-methyltransferase MraW [Shigella flexneri 2930-71] Length = 312 Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 125/311 (40%), Positives = 187/311 (60%), Gaps = 19/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + LN P + +D TFG GG+SR ++G ++A+DRDP A++ + Sbjct: 6 HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK- 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 T+ D + FS+ FS L +YV ++ +DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 65 TIDDPR--FSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 122 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G SA++ + A D+ +L GEE A RIA AIV+R + P T++L Sbjct: 123 LDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEEHFAKRIARAIVERNREQPMTRTKEL 182 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L ++SFH Sbjct: 183 AEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISFH 241 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306 SLEDR+VK+F SR +V A M +++ K ++P +E+VA N R+ Sbjct: 242 SLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGK--LMPGEEEVAENPRA 299 Query: 307 RSAKLRAGMRT 317 RS+ LR RT Sbjct: 300 RSSVLRIAERT 310 >gi|260767165|ref|ZP_05876108.1| S-adenosyl-methyltransferase MraW [Vibrio furnissii CIP 102972] gi|260617839|gb|EEX43015.1| S-adenosyl-methyltransferase MraW [Vibrio furnissii CIP 102972] Length = 316 Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 127/309 (41%), Positives = 177/309 (57%), Gaps = 20/309 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H+ VLL + I L P + +D TFG GG+SR+ ++G N + ++DRDP A++ Q+ Sbjct: 7 HISVLLHESIDGLAIKPDGIYIDGTFGRGGHSRTILSQLGPNGRLYSIDRDPQAIAEAQK 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +F++ FS + +Y VDGV+FDLGVSS Q+D +RGFSF K GP Sbjct: 67 I---DDPRFTIVHGPFSGIAEYAARYELVGKVDGVLFDLGVSSPQLDDAERGFSFMKDGP 123 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---PFQTT 188 LDMRM SG+ SD + QA++ D+T ++ GE+K A RIA AIV R++ P T Sbjct: 124 LDMRMDPTSGMPVSDWLAQADLDDITWVIREFGEDKHARRIAKAIVAYRENEENEPLTRT 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ LI S + HPATR+FQA RI++N+E+EE+ L+ A L G L V+ Sbjct: 184 SQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAASILAPQGRLSVI 243 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSN-----AHPAVFQSITKKVVVPTQEDVAFN 303 SFHSLEDR+VK+F S K V H IP A + K + P++ +VA N Sbjct: 244 SFHSLEDRMVKRFMRKES-KGPEVPHGIPLTQEQIRALGSADLKTVGKAIKPSEHEVAMN 302 Query: 304 RRSRSAKLR 312 RSRS+ LR Sbjct: 303 PRSRSSVLR 311 >gi|84625268|ref|YP_452640.1| S-adenosyl-methyltransferase MraW [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188575290|ref|YP_001912219.1| S-adenosyl-methyltransferase MraW [Xanthomonas oryzae pv. oryzae PXO99A] gi|84369208|dbj|BAE70366.1| cell division protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188519742|gb|ACD57687.1| S-adenosyl-methyltransferase MraW [Xanthomonas oryzae pv. oryzae PXO99A] Length = 347 Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 125/299 (41%), Positives = 175/299 (58%), Gaps = 11/299 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HVPVL +V+ L LD TFG GG++R + G ++ +D+DP A++ ++ Sbjct: 18 HVPVLYTQVLDGLQVTENGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDPDAIAVAEQ 77 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 T + S+ + +F+ L V VDG++ DLGVSS Q+D RGFSF K GPLDMR Sbjct: 78 TF-GGDARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLDVAGRGFSFGKDGPLDMR 136 Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M SG SA+ + QA +++ +L GEE+Q+ RIA AIV RR P T L+ LI Sbjct: 137 MDPDSGQSAAQWLAQATDREIADVLWAYGEERQSRRIARAIVARRAEQPLLRTAQLADLI 196 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 +V +++ HPATRSFQA+RI++N E+++L GL +A ALK GG L V+SFHSLED Sbjct: 197 -ASVMPRGDSKTHPATRSFQAIRIYINRELDDLETGLDAALAALKPGGRLAVISFHSLED 255 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRSAKLR 312 R+VK+F A R K +P A P V Q ++ + E + N R+RSA LR Sbjct: 256 RIVKQFMA-RYAKAPPSNRRLP-EAQPFVPTLQLVSGAIKADDTE-LNVNPRARSAVLR 311 >gi|218687959|ref|YP_002396171.1| S-adenosyl-methyltransferase MraW [Escherichia coli ED1a] gi|263446439|sp|B7MNU1|RSMH_ECO81 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|218425523|emb|CAR06306.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Escherichia coli ED1a] Length = 313 Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 125/311 (40%), Positives = 187/311 (60%), Gaps = 19/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + LN P +D TFG GG+SR ++G ++A+DRDP A++ + Sbjct: 7 HTTVLLDEAVNGLNIRPDGTYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 T+ D + FS+ FS L +YV ++ +DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 66 TIDDPR--FSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G SA++ + A D+ +L GEE+ A RIA AIV+R + P T++L Sbjct: 124 LDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKEL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L ++SFH Sbjct: 184 AEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISFH 242 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306 SLEDR+VK+F SR +V A M +++ K ++P +E+VA N R+ Sbjct: 243 SLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGK--LMPGEEEVAENPRA 300 Query: 307 RSAKLRAGMRT 317 RS+ LR RT Sbjct: 301 RSSVLRIAERT 311 >gi|254238917|ref|ZP_04932240.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|126170848|gb|EAZ56359.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] Length = 313 Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 124/305 (40%), Positives = 185/305 (60%), Gaps = 16/305 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQE 76 H+ VLLE+ ++ L P LD TFG GG+SR+ + G ++ D+DP A+ G+ Sbjct: 7 HITVLLEEAVSALAPREDGCYLDGTFGRGGHSRALLEKLGAGGRLLGFDKDPQAIQTGK- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F + Q +F++L D V +G VDGV+ DLGVSS Q+D +RGFSF GP Sbjct: 66 ALAAEDGRFVIVQRSFAELGDEVRARGLEGRVDGVLLDLGVSSPQLDDPERGFSFLNDGP 125 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ GISA++ + A +++ R+ GEE+ A R+A AIV+RRQ PF+ T DL Sbjct: 126 LDMRMNPGQGISAAEFIANAAEEEIARVFKEYGEERFAKRMARAIVQRRQERPFERTADL 185 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +I + + +PATR+FQ LRI VNNE+ +L +GL +A ++L GG L+V+SFH Sbjct: 186 AEVITVANPAWEKGK-NPATRAFQGLRIHVNNELGDLERGLDAALESLAVGGRLVVISFH 244 Query: 252 SLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVP---TQEDVAFNRRSR 307 SLEDR+VK F + G+ + +P + VF+ K + P ++E++ N RSR Sbjct: 245 SLEDRIVKLFMRKHAKGEADNLPRDLPIRSK--VFEPRLKLLGKPQYASEEELKANPRSR 302 Query: 308 SAKLR 312 SA +R Sbjct: 303 SAVMR 307 >gi|21230192|ref|NP_636109.1| S-adenosyl-methyltransferase MraW [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|188993033|ref|YP_001905043.1| S-adenosyl-methyltransferase MraW [Xanthomonas campestris pv. campestris str. B100] gi|24212033|sp|Q8PCK7|RSMH_XANCP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263504525|sp|B0RVB2|RSMH_XANCB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|21111730|gb|AAM40033.1| cell division protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|167734793|emb|CAP53003.1| S-adenosyl-methyltransferase [Xanthomonas campestris pv. campestris] Length = 342 Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 132/326 (40%), Positives = 180/326 (55%), Gaps = 15/326 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HVPVL +V+ L LD TFG GG++R + G ++ +D+DP A++ + Sbjct: 8 HVPVLYTQVLEGLQVTENGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDPEAIAVAEH 67 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 T + S+ + +F+ L V VDG++ DLGVSS Q+D RGFSF K GPLDMR Sbjct: 68 TF-GGDARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLDVAGRGFSFGKDGPLDMR 126 Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M SG SA+ + QA +++ +L GEE+Q+ RIA AIV RR P T L+ LI Sbjct: 127 MDPDSGQSAAGWLAQATDREIADVLWTYGEERQSRRIARAIVARRGEQPLLRTAQLADLI 186 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 +V +++ HPATRSFQA+RI +N E+ +L GL +A ALK GG L V+SFHSLED Sbjct: 187 -ASVMPRGDSKTHPATRSFQAIRIHINRELADLEAGLDAALGALKPGGRLAVISFHSLED 245 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 R+VK+F A R K +P A P V Q ++ + E +A N R+RSA LR Sbjct: 246 RIVKQFMA-RYAKAPPSNRRLP-EAQPFVPTLQLVSGAIKADDSE-LAVNPRARSAVLRV 302 Query: 314 ----GMRTVERSIEDDSFVHLPRLPT 335 GM E + R PT Sbjct: 303 AEKLGMENRESGMGKGHGAAASRFPT 328 >gi|323171245|gb|EFZ56893.1| S-adenosyl-methyltransferase MraW [Escherichia coli LT-68] Length = 313 Score = 204 bits (520), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 124/311 (39%), Positives = 188/311 (60%), Gaps = 19/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + LN P + +D TFG GG+SR ++G ++A+DRDP A++ + Sbjct: 7 HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 T+ D + FS+ FS L +YV ++ +DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 66 TIDDPR--FSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G SA++ + A D+ +L GEE+ A RIA AIV+R + P T++L Sbjct: 124 LDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKEL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L ++SFH Sbjct: 184 AEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISFH 242 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306 SLEDR+VK+F SR +V A M +++ K ++P +E++A N R+ Sbjct: 243 SLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGK--LMPGEEEMAENPRA 300 Query: 307 RSAKLRAGMRT 317 RS+ LR RT Sbjct: 301 RSSVLRIAERT 311 >gi|238898853|ref|YP_002924535.1| S-adenosyl-dependent methyl transferase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|263456095|sp|C4K744|RSMH_HAMD5 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|229466613|gb|ACQ68387.1| S-adenosyl-dependent methyl transferase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 311 Score = 204 bits (520), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 126/308 (40%), Positives = 190/308 (61%), Gaps = 15/308 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H VLL + + LN + +DATFG GG+S ++GS +I++DRDP AV + Sbjct: 6 HKTVLLYEAVDSLNIQNDGIYIDATFGRGGHSSLILSRLGSQGKLISIDRDPEAVKKAK- 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 M+D +FS Q +FS L YV ++G++FDLGVSS Q+D RGFSF + GP Sbjct: 65 LMKD--PRFSFIQGSFSDLYHYVKKLDLMGRINGLLFDLGVSSPQLDDAKRGFSFMRDGP 122 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G+SA++ + + NV++L +L GEE+ ++R+A AIV+R + P ++T++L Sbjct: 123 LDMRMDPSRGLSAAEWLMKVNVENLAWVLKNFGEERFSTRLARAIVERNRLNPIKSTKEL 182 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI + +N+ HPATRSFQA+RI++NNE++E++ L +A + L G L VVSFH Sbjct: 183 ADLISHVIPV-RNHHKHPATRSFQAIRIYINNELQEISSALNAALEILSLGARLSVVSFH 241 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKV--VVPTQEDVAFNRRSRS 308 SLEDR+VK F S +R + + +++Q K + +P+Q++V N RSRS Sbjct: 242 SLEDRIVKNFIRQHSRGPQILRGLPLTEIQIQSMWQPKLKLIGKTMPSQKEVLDNPRSRS 301 Query: 309 AKLRAGMR 316 + LR R Sbjct: 302 SILRFAER 309 >gi|239940578|ref|ZP_04692515.1| putative S-adenosylmethionine-dependent methyltransferase [Streptomyces roseosporus NRRL 15998] gi|239987061|ref|ZP_04707725.1| putative S-adenosylmethionine-dependent methyltransferase [Streptomyces roseosporus NRRL 11379] gi|291444013|ref|ZP_06583403.1| S-adenosylmethionine-dependent methyltransferase [Streptomyces roseosporus NRRL 15998] gi|291346960|gb|EFE73864.1| S-adenosylmethionine-dependent methyltransferase [Streptomyces roseosporus NRRL 15998] Length = 313 Score = 204 bits (520), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 123/311 (39%), Positives = 182/311 (58%), Gaps = 15/311 (4%) Query: 23 VLLEKVIALLNPA------PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74 ++L++ + LL PA P V++D T G GG+S + + +IALDRD A+ Sbjct: 1 MMLQRCLDLLAPALQDPAHPDPVVVDCTLGLGGHSEALLAAFPTARLIALDRDKEALRLS 60 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E + Y ++ +L A + +L + + G V GV+FDLGVSSMQ+D DRGF++ + Sbjct: 61 GERLAPYGDRATLVHAVYDELPEVLERLGIPKVQGVLFDLGVSSMQLDEADRGFAYAQDA 120 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S G+ A++V+N +L RIL GEEKQA RI AIV+ R+ PF + Sbjct: 121 PLDMRMDQSTGMGAAEVLNTYPPGELVRILRAYGEEKQAKRIVSAIVREREKEPFSNSAR 180 Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L LI+ + +K +PA R+FQALRI VN E+ L + + +A +L GG + V+S Sbjct: 181 LVELIRDALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVDSLAVGGRIAVLS 240 Query: 250 FHSLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 +HSLEDRLVK+ FA+ + ++P P + Q +T+ +PT+E+VA NRR+ Sbjct: 241 YHSLEDRLVKQVFAAGAANTAPPGLPVVPERYQPRLKQ-LTRGAELPTEEEVAENRRAAP 299 Query: 309 AKLRAGMRTVE 319 A+LR R E Sbjct: 300 ARLRGAQRIRE 310 >gi|24111527|ref|NP_706037.1| S-adenosyl-methyltransferase MraW [Shigella flexneri 2a str. 301] gi|30061649|ref|NP_835820.1| S-adenosyl-methyltransferase MraW [Shigella flexneri 2a str. 2457T] gi|42559469|sp|Q83SN7|RSMH_SHIFL RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|24050285|gb|AAN41744.1| putative apolipoprotein [Shigella flexneri 2a str. 301] gi|30039891|gb|AAP15625.1| putative apolipoprotein [Shigella flexneri 2a str. 2457T] gi|281599444|gb|ADA72428.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Shigella flexneri 2002017] gi|313646535|gb|EFS10996.1| S-adenosyl-methyltransferase MraW [Shigella flexneri 2a str. 2457T] gi|332762256|gb|EGJ92523.1| S-adenosyl-methyltransferase MraW [Shigella flexneri 2747-71] gi|332762643|gb|EGJ92908.1| S-adenosyl-methyltransferase MraW [Shigella flexneri 4343-70] gi|332764928|gb|EGJ95156.1| S-adenosyl-methyltransferase MraW [Shigella flexneri K-671] gi|333009116|gb|EGK28572.1| S-adenosyl-methyltransferase MraW [Shigella flexneri K-218] gi|333022474|gb|EGK41712.1| S-adenosyl-methyltransferase MraW [Shigella flexneri K-304] Length = 313 Score = 204 bits (520), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 125/311 (40%), Positives = 187/311 (60%), Gaps = 19/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + LN P + +D TFG GG+SR ++G ++A+DRDP A++ + Sbjct: 7 HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 T+ D + FS+ FS L +YV ++ +DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 66 TIDDPR--FSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G SA++ + A D+ +L GEE A RIA AIV+R + P T++L Sbjct: 124 LDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEEHFAKRIARAIVERNREQPMTRTKEL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L ++SFH Sbjct: 184 AEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISFH 242 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306 SLEDR+VK+F SR +V A M +++ K ++P +E+VA N R+ Sbjct: 243 SLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGK--LMPGEEEVAENPRA 300 Query: 307 RSAKLRAGMRT 317 RS+ LR RT Sbjct: 301 RSSVLRIAERT 311 >gi|311280938|ref|YP_003943169.1| S-adenosyl-methyltransferase MraW [Enterobacter cloacae SCF1] gi|308750133|gb|ADO49885.1| S-adenosyl-methyltransferase MraW [Enterobacter cloacae SCF1] Length = 313 Score = 204 bits (520), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 124/311 (39%), Positives = 186/311 (59%), Gaps = 19/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + LN P + +D TFG GG+SR ++G+ ++A+DRDP A + Sbjct: 7 HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGAEGRLLAIDRDPEATAVAN- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 T+ D + FS+ FS L DY ++ +DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 66 TIDDPR--FSIVHGPFSALADYAAERSLTGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G SA++ + A+ D+ ++ GEE+ RIA AIV+R + P T++L Sbjct: 124 LDMRMDPTRGQSAAEWLQTADEADIAWVIKTFGEERFGKRIARAIVERNRIEPMTRTKEL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +I K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L ++SFH Sbjct: 184 AEVIAAATPV-KDKHKHPATRTFQAVRIWVNSELEEIEQALKSSLDVLAPGGRLSIISFH 242 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306 SLEDR+VK+F SR +V A M +++ K ++P +E+VA N R+ Sbjct: 243 SLEDRIVKRFMREQSRGPQVPAGLPMTEEQLRKLGGRQLRALGK--LMPGEEEVAENPRA 300 Query: 307 RSAKLRAGMRT 317 RS+ LR RT Sbjct: 301 RSSVLRIAERT 311 >gi|323497887|ref|ZP_08102896.1| 16S rRNA m(4)C1402 methyltranserfase [Vibrio sinaloensis DSM 21326] gi|323316932|gb|EGA69934.1| 16S rRNA m(4)C1402 methyltranserfase [Vibrio sinaloensis DSM 21326] Length = 316 Score = 204 bits (520), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 128/315 (40%), Positives = 178/315 (56%), Gaps = 32/315 (10%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H+ VLL + I L P + +D TFG GG+SR+ K+G N + ++DRDP A++ E Sbjct: 7 HISVLLHESIDGLAIKPDGIYIDGTFGRGGHSRTILSKLGENGRLYSIDRDPQAIA---E 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F++ FS + DY D VDGV+ DLGVSS Q+D +RGFSF K GP Sbjct: 64 ANKIDDPRFTIIHGPFSGMADYAKDYDLVGKVDGVLLDLGVSSPQLDDAERGFSFMKDGP 123 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---PFQTT 188 LDMRM SGI S + +A++ D+T ++ GE+K A RIA AIV R++ P T Sbjct: 124 LDMRMDPTSGIPVSQWLLEADLDDITWVIREFGEDKHARRIAKAIVAYRENEENEPLTRT 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ LI + S + HPATR+FQA RI++N+E+EE+ L+ A L G L V+ Sbjct: 184 GQLAKLISEAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAASILAPEGRLSVI 243 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIP-----------SNAHPAVFQSITKKVVVPTQ 297 SFHSLEDR+VK+F S K V H IP +N P K + P++ Sbjct: 244 SFHSLEDRMVKRFIRKES-KGPEVPHGIPLTEDQIKAMGSANLKP------VGKAIKPSK 296 Query: 298 EDVAFNRRSRSAKLR 312 ++V N RSRS+ LR Sbjct: 297 QEVEMNARSRSSVLR 311 >gi|28571637|ref|NP_788632.1| CG14683, isoform A [Drosophila melanogaster] gi|62472493|ref|NP_001014615.1| CG14683, isoform B [Drosophila melanogaster] gi|74869026|sp|Q9VGY5|MET15_DROME RecName: Full=Probable methyltransferase-like protein 15 homolog gi|15291185|gb|AAK92861.1| GH10770p [Drosophila melanogaster] gi|28381233|gb|AAO41540.1| CG14683, isoform A [Drosophila melanogaster] gi|61679326|gb|AAX52945.1| CG14683, isoform B [Drosophila melanogaster] gi|220945126|gb|ACL85106.1| CG14683-PA [synthetic construct] gi|220954938|gb|ACL90012.1| CG14683-PA [synthetic construct] Length = 356 Score = 204 bits (520), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 130/341 (38%), Positives = 192/341 (56%), Gaps = 37/341 (10%) Query: 11 SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDP 68 S+I T HVPVL + I L P PG D TFGAGG++R + + V ALDRDP Sbjct: 18 SSIDVTTAPHVPVLCDTAIEYLQPVPGGTYFDMTFGAGGHTRRLLEKCPEAKVYALDRDP 77 Query: 69 FAVSCGQETMR--DYKEQFSLFQATFSQLQDYVPDKG-----VDGVVFDLGVSSMQIDCG 121 A ++ ++K + FS L + G VDG++FD G SSMQ D Sbjct: 78 LAHQLARDMSESEEFKGRLIPLLGKFSDLPKLFKEHGLAKNSVDGMLFDFGCSSMQFDEA 137 Query: 122 DRGFSFQKSGPLDMRMS---CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178 RGFS + GPLDMRM G++A+DV+ DL +IL + GEEK A +IA +V Sbjct: 138 VRGFSISRDGPLDMRMDGGHSGGVTAADVLANVEEGDLVKILRMYGEEKAAKKIARGLVD 197 Query: 179 RRQSA-PFQTTQDLSSLIQKTV-YFSKNNRI----HPATRSFQALRIFVNNEIEELAQGL 232 R + +TT+ L+ +I+ + ++ +++ H AT++FQA+RIFVNNE+ E+ G+ Sbjct: 198 ARNALFKIETTKQLADIIENIMDGGTRKDKLRRPAHSATKTFQAIRIFVNNELNEINYGM 257 Query: 233 RSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMA-VRHMIP--SNAH-----PAV 284 A + L+ G L+ ++FHSLED +VK+ +G V+A + +P ++H P + Sbjct: 258 VLANEILRVDGRLVTITFHSLEDTIVKRHI---NGNVLAGAANALPLKYSSHYAIDEPDI 314 Query: 285 FQSITKK--------VVVPTQEDVAFNRRSRSAKLRAGMRT 317 +S+TKK V+VP ++VA N RSRSAKLRA ++T Sbjct: 315 LESLTKKSWKQLHRHVIVPDADEVARNTRSRSAKLRAAVKT 355 >gi|194434429|ref|ZP_03066691.1| S-adenosyl-methyltransferase MraW [Shigella dysenteriae 1012] gi|194417345|gb|EDX33452.1| S-adenosyl-methyltransferase MraW [Shigella dysenteriae 1012] gi|332098043|gb|EGJ03016.1| S-adenosyl-methyltransferase MraW [Shigella dysenteriae 155-74] Length = 313 Score = 204 bits (520), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 124/311 (39%), Positives = 187/311 (60%), Gaps = 19/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + LN P + +D TFG GG+SR ++G ++A+DRDP A++ + Sbjct: 7 HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 T+ D + FS+ FS L +YV ++ +DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 66 TIDDPR--FSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G SA++ + A D+ +L GEE+ A RIA AIV+R + P T++L Sbjct: 124 LDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKEL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L ++SFH Sbjct: 184 AEVVAAATSV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISFH 242 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306 SLEDR+VK+F SR +V M +++ K ++P +E+VA N R+ Sbjct: 243 SLEDRIVKRFMRENSRGPQVPVGLPMTEEQLKKLGGRQLRALGK--LMPGEEEVAENPRA 300 Query: 307 RSAKLRAGMRT 317 RS+ LR RT Sbjct: 301 RSSVLRIAERT 311 >gi|218961102|ref|YP_001740877.1| S-adenosyl-methyltransferase MraW [Candidatus Cloacamonas acidaminovorans] gi|167729759|emb|CAO80671.1| S-adenosyl-methyltransferase MraW [Candidatus Cloacamonas acidaminovorans] Length = 327 Score = 204 bits (520), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 121/304 (39%), Positives = 174/304 (57%), Gaps = 10/304 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 H PV++++ ++ LN G + +DAT G GG+S + K + D+D A+ + Sbjct: 4 HTPVMVKECLSYLNLRAGYIYVDATTGGGGHSLAMLKAQPEIKLYCFDQDSEAIEEAGKI 63 Query: 78 MRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + +Y L QA F QL+ Y KG+DG++FDLGVSS Q++C +RGFSF+K PLD Sbjct: 64 LHNYN-NVELIQANFKQLRTELAYRKIKGIDGILFDLGVSSHQLECTERGFSFEKDAPLD 122 Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM + SA + VN+ + K LT I GEE+ A RIA AI K S P +TT++L+ Sbjct: 123 MRMDKNLKNSAYNAVNELDTKTLTNIFREYGEEQNAYRIAKAIEK--SSKPIKTTRELAK 180 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 +++ + R FQALRI+VN E+E L+ L+ A L G ++V+S+HSL Sbjct: 181 IVESIAGKGTKASLKTKVRVFQALRIYVNKELESLSLALQDAINLLNPQGRIVVISYHSL 240 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNA-HPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 EDR+VK+ F K + SN H +TKK V T+E++ N RSRSAKLR Sbjct: 241 EDRIVKQTFKKAEQKNEEQSVLPNSNKNHQQQLIILTKKPVTATEEEILVNPRSRSAKLR 300 Query: 313 AGMR 316 AG + Sbjct: 301 AGEK 304 >gi|289578681|ref|YP_003477308.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter italicus Ab9] gi|289528394|gb|ADD02746.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter italicus Ab9] Length = 308 Score = 204 bits (520), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 118/304 (38%), Positives = 173/304 (56%), Gaps = 8/304 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77 H VLL++ I LN P + +D T G GG+S K +IA+DRD A+ G+E Sbjct: 5 HKSVLLKETIEYLNIKPEGIYVDGTLGGGGHSEEILKRLTKGKLIAIDRDLDAIKAGKER 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 +++YK F +++ + GVD G++ DLGVSS Q++ +RGFS+ K PLD Sbjct: 65 LKNYK-NVKYINNNFKNIKEILKSLGVDKVDGIILDLGVSSFQLEEVERGFSYMKDAPLD 123 Query: 135 MRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM S SA DVVN+ + ++L +++ GEEK ASRIA IVK R+ +TT L Sbjct: 124 MRMDKNSTFSAYDVVNKYSQQELEKVIREYGEEKWASRIAKFIVKEREKGEIKTTFQLVE 183 Query: 194 LIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ + S + HPA R+FQA+RI VN E++ L + + + L+ G + +++FHS Sbjct: 184 IIKNAIPASARRKGPHPAKRTFQAIRIEVNEELKGLGKAIEDMVEVLRGKGRIAIITFHS 243 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK F +M V + ITKK VVP++E++ N RSRSAKLR Sbjct: 244 LEDRIVKNTFKKLENPCTCPPNMPCICGKKPVVKIITKKPVVPSKEEIETNSRSRSAKLR 303 Query: 313 AGMR 316 + Sbjct: 304 VAEK 307 >gi|227327098|ref|ZP_03831122.1| S-adenosyl-methyltransferase MraW [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 314 Score = 204 bits (520), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 124/309 (40%), Positives = 186/309 (60%), Gaps = 16/309 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + LN G + +D TFG GG+SR ++G ++A+DRDP A+ + Sbjct: 7 HTTVLLDEAVNGLNIRSGGIYIDGTFGRGGHSRLILSQLGPEGRLLAIDRDPQAIEAAR- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + D + FS+ FS + +YV + G +DGV+ DLGVSS Q+D +RGFSF + GP Sbjct: 66 AIDDPR--FSIIHGPFSAMAEYVAELGLTGQIDGVLLDLGVSSPQLDDPERGFSFMRDGP 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G+SA++ + +A D+ +L GEE+ A RIA AIV+R + P T++L Sbjct: 124 LDMRMDPTRGLSAAEWLMKAEADDIVWVLKTFGEERFAKRIARAIVERNRLDPMTRTKEL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI + ++ HPATRSFQA+RI++N+E+EE+ + L A L G L V+SFH Sbjct: 184 AELIAAASPIREKHK-HPATRSFQAIRIYINSELEEIERALEGALSVLAPQGRLSVISFH 242 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSI--TKKVVVPTQEDVAFNRRSR 307 SLEDR+VK+F SR +V A + Q++ K ++P++E+VA N R+R Sbjct: 243 SLEDRIVKRFIRHQSRGPQVPAGLPLTEEQLRSQGGQTLKAVGKKLMPSEEEVAENPRAR 302 Query: 308 SAKLRAGMR 316 S+ LR R Sbjct: 303 SSVLRFAER 311 >gi|218893511|ref|YP_002442380.1| S-adenosyl-methyltransferase MraW [Pseudomonas aeruginosa LESB58] gi|262825031|sp|B7UZJ8|RSMH_PSEA8 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|218773739|emb|CAW29553.1| putative methyltransferase [Pseudomonas aeruginosa LESB58] Length = 313 Score = 204 bits (519), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 123/305 (40%), Positives = 185/305 (60%), Gaps = 16/305 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQE 76 H+ VLLE+ ++ L P LD TFG GG+SR+ + G ++ D+DP A+ G+ Sbjct: 7 HITVLLEEAVSALAPREDGCYLDGTFGRGGHSRALLEKLGAGGRLLGFDKDPQAIQTGK- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F + Q +F++L D V +G +DGV+ DLGVSS Q+D +RGFSF GP Sbjct: 66 ALAAEDGRFVIVQRSFAELGDEVRARGLEGRIDGVLLDLGVSSPQLDDPERGFSFLNDGP 125 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ GISA++ + A +++ R+ GEE+ A R+A AIV+RRQ PF+ T DL Sbjct: 126 LDMRMNPGQGISAAEFIANAAEEEIARVFKEYGEERFAKRMARAIVQRRQERPFERTADL 185 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +I + + +PATR+FQ LRI VNNE+ +L +GL +A ++L GG L+V+SFH Sbjct: 186 AEVITVANPAWEKGK-NPATRAFQGLRIHVNNELGDLERGLDAALESLAVGGRLVVISFH 244 Query: 252 SLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVP---TQEDVAFNRRSR 307 SLEDR+VK F + G+ + +P + VF+ K + P ++E++ N RSR Sbjct: 245 SLEDRIVKLFMRKHAKGEADNLPRDLPIRSK--VFEPRLKLLGKPQYASEEELKANPRSR 302 Query: 308 SAKLR 312 SA +R Sbjct: 303 SAVMR 307 >gi|26246015|ref|NP_752054.1| S-adenosyl-methyltransferase MraW [Escherichia coli CFT073] gi|300981119|ref|ZP_07175365.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 45-1] gi|30173069|sp|Q8FL68|RSMH_ECOL6 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|26106412|gb|AAN78598.1|AE016755_98 S-adenosyl-methyltransferase mraW [Escherichia coli CFT073] gi|300409021|gb|EFJ92559.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 45-1] gi|315294723|gb|EFU54066.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 153-1] Length = 313 Score = 204 bits (519), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 125/311 (40%), Positives = 187/311 (60%), Gaps = 19/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + LN P + +D TFG GG+SR ++G ++A+DRDP A++ + Sbjct: 7 HFTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 T+ D + FS+ FS L +YV D+ +DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 66 TIDDPR--FSIIHGPFSALGEYVADRDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G SA++ + A D+ +L GEE+ A RIA AIV+ + P T++L Sbjct: 124 LDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVEHNREQPMTRTKEL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L ++SFH Sbjct: 184 AEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLHVLAPGGRLSIISFH 242 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306 SLEDR+VK+F SR +V A M +++ K ++P +E+VA N R+ Sbjct: 243 SLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGK--LMPGEEEVAENPRA 300 Query: 307 RSAKLRAGMRT 317 RS+ LR RT Sbjct: 301 RSSVLRIAERT 311 >gi|255101826|ref|ZP_05330803.1| S-adenosyl-methyltransferase [Clostridium difficile QCD-63q42] gi|255307693|ref|ZP_05351864.1| S-adenosyl-methyltransferase [Clostridium difficile ATCC 43255] Length = 311 Score = 204 bits (519), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 118/308 (38%), Positives = 176/308 (57%), Gaps = 13/308 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 HV VLL + I LN P V +D T G G+S+ K S+ I D+D A+S +E Sbjct: 5 HVSVLLNECIENLNIKPDGVYVDCTMGGAGHSKEIVKKLSDKGLFIGFDQDKNAISTAKE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + +Y+ + + F +++ + GV DGV+ DLGVSS Q+D DRGFS+ + PL Sbjct: 65 RLSEYESRVKFVHSNFENIKEELEKIGVYKIDGVLADLGVSSHQLDEADRGFSYMQDAPL 124 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM SA DVVN +LT+I+ GE+ A RIA IV+ R + P +TT +L Sbjct: 125 DMRMDVRCEFSAYDVVNTYTEDELTKIIKDYGEDNWAKRIAKFIVEERANKPIETTGELV 184 Query: 193 SLIQKTVYFSKNNRI---HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 +I+K + K RI HPA R+FQA+RI VNNE+ + + + A + GG + +++ Sbjct: 185 DVIKKAI--PKKARIDGPHPAKRTFQAIRIEVNNELGVITKMINDASSIMNEGGRICIIT 242 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK F + + +H+ I + + IT+K ++P++E++ N RSRS Sbjct: 243 FHSLEDRIVKNAFKHLASDCICPQHLPICQCDKESEVKIITRKPILPSEEEIEVNPRSRS 302 Query: 309 AKLRAGMR 316 AKLR + Sbjct: 303 AKLRVAEK 310 >gi|20139121|sp|Q9AJG9|RSMH_VIBPR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|13537266|dbj|BAB40618.1| hypothetical protein [Vibrio proteolyticus] Length = 316 Score = 204 bits (519), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 126/311 (40%), Positives = 182/311 (58%), Gaps = 24/311 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H+ VLL + I L P + +D TFG GG+SR+ ++G N + ++DRDP A++ + Sbjct: 7 HISVLLHESIEGLAIKPDGIYIDGTFGRGGHSRTILSQLGENGRLYSIDRDPQAIAEAK- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 T+ D + F++ FS + Y G VDGV+FDLGVSS Q+D +RGFSF K GP Sbjct: 66 TIDDPR--FTIVHGPFSGIAHYAKQHGLAGKVDGVLFDLGVSSPQLDDAERGFSFMKDGP 123 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---PFQTT 188 LDMRM SGI S + +A++ D+T ++ GE+K A RIA AIV R++ P + T Sbjct: 124 LDMRMDPTSGIPVSQWLMEADLDDITWVIREFGEDKHARRIAKAIVAYRENEENEPLKRT 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ LI S + HPATR+FQA RI++N+E+EE+ L+ A + L G L V+ Sbjct: 184 SQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAAEILAPQGRLSVI 243 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK-------KVVVPTQEDVA 301 SFHSLEDR+VK+F S + V H IP A Q++ K + P+++++ Sbjct: 244 SFHSLEDRMVKRFIRKES-QGPQVPHGIPMTE--AQIQALGSANMKAIGKAIKPSKQEIE 300 Query: 302 FNRRSRSAKLR 312 N RSRS+ LR Sbjct: 301 LNPRSRSSVLR 311 >gi|212635034|ref|YP_002311559.1| S-adenosyl-methyltransferase MraW [Shewanella piezotolerans WP3] gi|262826550|sp|B8CM48|RSMH_SHEPW RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|212556518|gb|ACJ28972.1| S-adenosyl-methyltransferase mraW [Shewanella piezotolerans WP3] Length = 318 Score = 204 bits (519), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 120/309 (38%), Positives = 180/309 (58%), Gaps = 15/309 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQ 75 +H+ VLL + +A LN + +D TFG GG+SR ++G N +IA+DRDP A+ + Sbjct: 6 EHLSVLLTETVAGLNIREDGIYIDGTFGRGGHSRKVLEQLGPNGRLIAIDRDPQAILAAE 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + D + F + F QL YV + G +DGV+ D GVSS Q+D +RGFSF + G Sbjct: 66 QFKDDSR--FQIVHGGFGQLAQYVEELGLKGKIDGVLLDFGVSSPQLDDAERGFSFLRDG 123 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S G +A+ + +A ++D+ + GEEK + IA I R+ PF T++ Sbjct: 124 PLDMRMDNSQGQTAAQWIARAEIEDMAWVFKTYGEEKNSRHIARCIAADREKTPFLRTKE 183 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ LI + + N+ HPATR FQA+RI++N+E+E++ Q L A L G L V+SF Sbjct: 184 LADLIARITKNKERNK-HPATRVFQAIRIYINSELEQIDQALEGALTVLAPEGRLSVISF 242 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIP---SNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 HSLEDR+VK+F R + +V H +P + + + K + P+ E++ N R+R Sbjct: 243 HSLEDRMVKRFI-RRHSQGESVPHGLPITEAEINKSRKLKGIGKAIKPSAEEIERNARAR 301 Query: 308 SAKLRAGMR 316 S+ LR G R Sbjct: 302 SSVLRIGER 310 >gi|325829899|ref|ZP_08163357.1| S-adenosyl-methyltransferase MraW [Eggerthella sp. HGA1] gi|325488066|gb|EGC90503.1| S-adenosyl-methyltransferase MraW [Eggerthella sp. HGA1] Length = 318 Score = 204 bits (519), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 120/313 (38%), Positives = 181/313 (57%), Gaps = 18/313 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H PVLL + + N P +DAT G G+S K+ G +I +D+D A++ + Sbjct: 7 HTPVLLAECLEYSNLKPQHTFVDATLGGAGHSFEAAKLIGSGGTLIGIDQDEVALAAARL 66 Query: 77 TM----RDYKEQFSLFQATFSQLQDY-----VPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 + D + + L + F + + VP GVD V+FDLGVSS+QID RGFSF Sbjct: 67 KLGTLPDDVRPRLELVRGNFGNMDEALLSTEVP--GVDAVLFDLGVSSVQIDTPSRGFSF 124 Query: 128 QKSGPLDMRMSCS--GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 +++GPLDMRM ++A++++N DLTRI+ +EK ASRIA V+ RQ+AP Sbjct: 125 KENGPLDMRMDPGKQTLTAAEIINTYTAADLTRIIRTYSDEKWASRIADFAVRARQNAPI 184 Query: 186 QTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 +T++ L +I+ + S + HPA R+FQALRI VN E++ L GL +A + L GG Sbjct: 185 ETSEQLVDIIKAAIPASARRAGGHPAKRTFQALRIEVNGELDVLRSGLDAAIRWLNPGGR 244 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFN 303 L+V+S+HSLEDR+VK+ FA + + + + + +T+K V+PT E++ N Sbjct: 245 LVVISYHSLEDRIVKETFAKFANRCTCPPDLPVCMCGKQPILDIVTRKPVLPTAEEIERN 304 Query: 304 RRSRSAKLRAGMR 316 R+RSAKLR + Sbjct: 305 ARARSAKLRVAQK 317 >gi|317124641|ref|YP_004098753.1| S-adenosyl-methyltransferase MraW [Intrasporangium calvum DSM 43043] gi|315588729|gb|ADU48026.1| S-adenosyl-methyltransferase MraW [Intrasporangium calvum DSM 43043] Length = 371 Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 123/306 (40%), Positives = 180/306 (58%), Gaps = 14/306 (4%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74 HVP++ ++++ LL PA PG V +D T G GG++ G VI +DRD A++ Sbjct: 11 HVPIMRDRILDLLAPALSTPGAVHVDGTLGMGGHAEGVLSRFPGCRVIGVDRDREALTLA 70 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E + + ++F AT +L + D G VDG+VFDLGVSS+Q+D DRGF+++ Sbjct: 71 GERLAGFGDRFLPVHATNDELARVLLDSGLQHVDGIVFDLGVSSLQLDEEDRGFAYRVDA 130 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM G +A+DV+N +V+D+TRIL GEE+ A +IA AIV+ R+ PF T+ Sbjct: 131 PLDMRMDQTRGQTAADVLNTYSVEDVTRILREYGEERFARKIAVAIVREREDEPFATSGR 190 Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L L+++ + S+ HPA R+FQALRI VN+E+ + + +A L GG + V+S Sbjct: 191 LVELLRRVIPVASQRQSGHPAKRTFQALRIEVNDELGGWERAVAAAIDVLAVGGRMAVLS 250 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNA--HPAVFQSITKKVVVPTQEDVAFNRRSR 307 FHSLEDRL K+ FA G + +P H +++T+ P +V N R+ Sbjct: 251 FHSLEDRLTKRAFA--LGATSSAPRGLPVELPHHAPYLRALTRGAEEPDDAEVLANPRAA 308 Query: 308 SAKLRA 313 SAKLRA Sbjct: 309 SAKLRA 314 >gi|300741256|ref|ZP_07071277.1| S-adenosyl-methyltransferase MraW [Rothia dentocariosa M567] gi|300380441|gb|EFJ77003.1| S-adenosyl-methyltransferase MraW [Rothia dentocariosa M567] Length = 359 Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 119/305 (39%), Positives = 179/305 (58%), Gaps = 10/305 (3%) Query: 20 HVPVLLEKVIALLNPAPGK---VILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCG 74 HVPV+L++ + LL PA + V++D T G GG++ + + SN VI +DRD A + Sbjct: 48 HVPVMLDRCLELLEPAISRQDAVVIDGTLGMGGHTEAMLERFSNLTVIGIDRDAQAHAIA 107 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E + + +F + ++D + GV DGV+ DLGVSSMQ+D RGF++ Sbjct: 108 AERLARFGNRFVPVHTVYDHIEDAMSAAGVTSVDGVLLDLGVSSMQLDERSRGFAYSYDA 167 Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ ++A VVN+ + L RI+ GEEK A+RIA IV++R+ PF TT + Sbjct: 168 PLDMRMNGDDELTARIVVNEYSENQLRRIIKNWGEEKFAARIAQHIVEQRKHTPFTTTGE 227 Query: 191 LSSLIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L + IQK V + + HPA R+FQALRI VN+E+E L + + +A AL+ GG + +S Sbjct: 228 LVAAIQKAVPAAAQRKGGHPAKRTFQALRIEVNHELEALERAVPAALDALRLGGRFVAMS 287 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 +HSLED++VK+ + + + H + IT+ PT+ ++A N R+ SA Sbjct: 288 YHSLEDKIVKRALTEAATSKAPKGFPVELDEHQPTIRVITRGAEPPTEAEIAENPRAASA 347 Query: 310 KLRAG 314 KLRAG Sbjct: 348 KLRAG 352 >gi|284008372|emb|CBA74773.1| S-adenosyl-methyltransferase [Arsenophonus nasoniae] Length = 393 Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 124/307 (40%), Positives = 187/307 (60%), Gaps = 17/307 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H+ VLL++ + LN + +D TFG GG+S+ ++GS +IA+DRDP AV+ +E Sbjct: 84 HISVLLDEAVNGLNIKANGIYVDGTFGRGGHSQLILSRLGSKGRLIAIDRDPHAVAAAEE 143 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + D +FS+ +FSQLQ ++ +G +DGV+ DLGVSS Q+D +RGFSF + GP Sbjct: 144 MITD--NRFSIKHGSFSQLQTFIAQEGLVGKIDGVLLDLGVSSPQLDDPERGFSFMRDGP 201 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---PFQTT 188 LDMRM +G SA+ + +A+ D+ +L GEE+ A RIA AIV R + P T Sbjct: 202 LDMRMDPTTGQSAAQWLMKADEADIAWVLKTYGEERFAKRIAKAIVARNHHSAEEPLTRT 261 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 + L+ LI + F + ++ HPATRSFQA+RI++N+E+EE+A+ L + L G L ++ Sbjct: 262 KQLAELIAQVSPFKEKHK-HPATRSFQAIRIYINSELEEIAKALEGSLNILAPQGRLSII 320 Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKV--VVPTQEDVAFNRR 305 SFHSLEDRLVK+F S G + V + A+ I K + + PT+ ++ N R Sbjct: 321 SFHSLEDRLVKRFIREHSRGPKVPVGLPLTDVQLKAIGSPILKVLGKMKPTEREIIENPR 380 Query: 306 SRSAKLR 312 +RS+ +R Sbjct: 381 ARSSVVR 387 >gi|160933348|ref|ZP_02080736.1| hypothetical protein CLOLEP_02193 [Clostridium leptum DSM 753] gi|156867225|gb|EDO60597.1| hypothetical protein CLOLEP_02193 [Clostridium leptum DSM 753] Length = 308 Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 122/303 (40%), Positives = 176/303 (58%), Gaps = 7/303 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H+PVLL + I L P V +D T G GG+S + K S +IA+D+DP A++ + Sbjct: 5 HLPVLLRETIEGLAVKPDGVYVDGTAGGGGHSEAIAKRLSTGRLIAIDQDPDAIAAVTKR 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + DY ++ +A FSQ+++ V GVD GV+ D+GVSS Q+D +RGFS+ PLD Sbjct: 65 LADYP-GVTVCRANFSQMEEVVRSLGVDSVDGVLMDIGVSSHQLDTPERGFSYHSDAPLD 123 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRMS G A D+VN ++L IL GEE+ + RIA I R+ AP +TT L+ + Sbjct: 124 MRMSQEGPGAGDLVNSLPWQELAEILSRYGEERFSKRIAQGIAAAREQAPIETTFQLAEI 183 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 ++ + HPA ++FQALRI VN E++ L++GL +A LK GG L V++FHSLE Sbjct: 184 VKNAYPAAARRDGHPARKTFQALRIAVNGELDRLSEGLDAAFSLLKPGGRLAVITFHSLE 243 Query: 255 DRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 DRLVK+ AS G + + +T+K V ++ ++ N RSRSAKLR Sbjct: 244 DRLVKRRMASWCQGCTCPPDFPVCVCGKTPSAELVTRKPVKASETELEKNPRSRSAKLRV 303 Query: 314 GMR 316 +R Sbjct: 304 CIR 306 >gi|317489854|ref|ZP_07948347.1| MraW methylase [Eggerthella sp. 1_3_56FAA] gi|316911009|gb|EFV32625.1| MraW methylase [Eggerthella sp. 1_3_56FAA] Length = 318 Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 125/319 (39%), Positives = 183/319 (57%), Gaps = 30/319 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H PVLL + + N P +DAT G G+S K+ G +I +D+D A++ + Sbjct: 7 HTPVLLAECLEYSNLKPQHTFVDATLGGAGHSFEAAKLIGSGGTLIGIDQDEVALAAARL 66 Query: 77 TM----RDYKEQFSLFQATFSQLQDY-----VPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 + D + + L + F + + VP GVD V+FDLGVSS+QID RGFSF Sbjct: 67 KLGTLPDDVRPRLELVRGNFGNMDEALLSTEVP--GVDAVLFDLGVSSVQIDTPSRGFSF 124 Query: 128 QKSGPLDMRMSCS--GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 +++GPLDMRM ++A++++N DLTRI+ +EK ASRIA V+ RQ+AP Sbjct: 125 KENGPLDMRMDPGKQTLTAAEIINTYTAADLTRIIRTYSDEKWASRIADFAVRARQNAPI 184 Query: 186 QTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 +T++ L +I+ + S + HPA R+FQALRI VN E++ L GL +A + L GG Sbjct: 185 ETSEQLVDIIKAAIPASARRAGGHPAKRTFQALRIEVNGELDVLRSGLDAAIRWLNPGGR 244 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPA-------VFQSITKKVVVPTQ 297 L+V+S+HSLEDR+VK+ FA A R P + PA + +T+K V+PT Sbjct: 245 LVVISYHSLEDRIVKETFAK-----FANRCTCPPDL-PACMCGKQPILDIVTRKPVLPTA 298 Query: 298 EDVAFNRRSRSAKLRAGMR 316 E++ N R+RSAKLR + Sbjct: 299 EEIERNARARSAKLRVAQK 317 >gi|126700272|ref|YP_001089169.1| S-adenosyl-methyltransferase MraW [Clostridium difficile 630] gi|123174036|sp|Q182Z2|RSMH_CLOD6 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|115251709|emb|CAJ69544.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Clostridium difficile] Length = 311 Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 118/308 (38%), Positives = 176/308 (57%), Gaps = 13/308 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 HV VLL + I LN P V +D T G G+S+ K S+ I D+D A+S +E Sbjct: 5 HVSVLLNECIENLNIKPDGVYVDCTMGGAGHSKEIVKKLSDKGLFIGFDQDKNAISTAKE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + +Y+ + + F +++ + GV DGV+ DLGVSS Q+D DRGFS+ + PL Sbjct: 65 RLSEYESRVKFVHSNFENIKEELEKIGVYKIDGVLADLGVSSHQLDEADRGFSYMQDAPL 124 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM SA DVVN +LT+I+ GE+ A RIA IV+ R + P +TT +L Sbjct: 125 DMRMDVRCEFSAYDVVNTYTEDELTKIIKDYGEDNWAKRIAKFIVEERANKPIETTGELV 184 Query: 193 SLIQKTVYFSKNNRI---HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 +I+K + K RI HPA R+FQA+RI VNNE+ + + + A + GG + +++ Sbjct: 185 DVIKKAI--PKKARIVGPHPAKRTFQAIRIEVNNELGVITKMINDASSIMNEGGRICIIT 242 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK F + + +H+ I + + IT+K ++P++E++ N RSRS Sbjct: 243 FHSLEDRIVKNAFKHLASDCICPQHLPICQCDKESEVKIITRKPILPSEEEIEVNPRSRS 302 Query: 309 AKLRAGMR 316 AKLR + Sbjct: 303 AKLRVAEK 310 >gi|124265647|ref|YP_001019651.1| S-adenosyl-methyltransferase MraW [Methylibium petroleiphilum PM1] gi|167011833|sp|A2SCX7|RSMH_METPP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|124258422|gb|ABM93416.1| S-adenosyl-methyltransferase MraW [Methylibium petroleiphilum PM1] Length = 318 Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 128/307 (41%), Positives = 186/307 (60%), Gaps = 13/307 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76 H VLL + + L +P +D T+G GG+SR S ++A+DRDP AV+ Sbjct: 10 HTTVLLHEAVDALVHSPDGYYVDGTYGRGGHSRLILSKLSAAGRLLAIDRDPDAVAHATS 69 Query: 77 -TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 R +F + A +S+L + +GV DG++ D+GVSS QID +RGFSF+ SGP Sbjct: 70 GAARVTDPRFHIEHAPYSELPALLAARGVSRIDGLLLDIGVSSPQIDNPERGFSFRASGP 129 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA-PFQTTQD 190 LDMRM + G SA+D + +A+ +++ ++ GEE+ A+ IA A+V RR + P +TT++ Sbjct: 130 LDMRMDPTRGESAADYLARADEREIAAVIRDYGEERFATAIARALVARRLAGRPVRTTEE 189 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ L+ + V + + +PATR+FQALRIFVN E+ +L QGL +A + LK GG L+V+SF Sbjct: 190 LAELVAQAVKTREPGQ-NPATRTFQALRIFVNAELTQLEQGLAAALQCLKPGGRLVVISF 248 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDR+VK F AS S V+ R A PA + + P ++VA N R+RSA Sbjct: 249 HSLEDRIVKTFIASHSKAVVDRRAPF---APPAPMRLRALARLKPGADEVAANPRARSAI 305 Query: 311 LRAGMRT 317 LR RT Sbjct: 306 LRVAERT 312 >gi|311113332|ref|YP_003984554.1| S-adenosyl-methyltransferase MraW [Rothia dentocariosa ATCC 17931] gi|310944826|gb|ADP41120.1| S-adenosyl-methyltransferase MraW [Rothia dentocariosa ATCC 17931] Length = 364 Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 119/305 (39%), Positives = 180/305 (59%), Gaps = 10/305 (3%) Query: 20 HVPVLLEKVIALLNPAPGK---VILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCG 74 HVPV+L++ + LL PA + V++D T G GG++ + + SN VI +DRD A + Sbjct: 53 HVPVMLDRCLELLEPAISRQDAVVIDGTLGMGGHTEAMLERFSNLTVIGIDRDAQAHAIA 112 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E + + ++F + ++D + GV DGV+ DLGVSSMQ+D RGF++ Sbjct: 113 VERLARFGDRFVPVHTVYDHIEDAMSAAGVTSVDGVLLDLGVSSMQLDERSRGFAYSYDA 172 Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ ++A VVN+ + L RI+ GEEK A+RIA IV++R+ PF TT + Sbjct: 173 PLDMRMNGDDELTARIVVNEYSENQLRRIIKNWGEEKFAARIAQHIVEQRKHTPFTTTGE 232 Query: 191 LSSLIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L + IQK V + + HPA R+FQALRI VN+E+E L + + +A AL+ GG + +S Sbjct: 233 LVAAIQKAVPAAAQRKGGHPAKRTFQALRIEVNHELEALERAVPAALDALRLGGRFVAMS 292 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 +HSLED++VK+ + + + H + IT+ PT+ ++A N R+ SA Sbjct: 293 YHSLEDKIVKRALTEAATSKAPKGFPVELDEHQPTIRVITRGAEPPTEAEIAENPRAASA 352 Query: 310 KLRAG 314 KLRAG Sbjct: 353 KLRAG 357 >gi|284045229|ref|YP_003395569.1| S-adenosyl-methyltransferase MraW [Conexibacter woesei DSM 14684] gi|283949450|gb|ADB52194.1| S-adenosyl-methyltransferase MraW [Conexibacter woesei DSM 14684] Length = 314 Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 122/312 (39%), Positives = 181/312 (58%), Gaps = 8/312 (2%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMG--SNVIALDRDPFAVSCG 74 G H+PVL ++I LL+P PG+V++D T G GG++R ++G +I +DRDP A Sbjct: 3 GIHIPVLAGELIELLDPQPGQVVVDCTLGGGGHARLVAGRIGPTGTLIGIDRDPIAEERF 62 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGV--DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + +A F+Q + + +GV D V DLG+SSMQ+D +RGFS+ P Sbjct: 63 AELTAEVSCTTRFIRADFAQGLEQLAREGVQADLVYMDLGMSSMQVDTWERGFSYAYDAP 122 Query: 133 LDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S ++A +VVN + + L R+L GEE+ AS+IA AI + R+ P +TTQ L Sbjct: 123 LDMRMDSEQELTAHEVVNGWDERRLARLLKEYGEERYASKIARAIARTREQQPIETTQAL 182 Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+ + ++ HPA R+FQA+RI VN E+E++ GL A L GG L +SF Sbjct: 183 VDVIKSAIPIPAQFGGGHPAKRTFQAIRIAVNEELEQIDDGLPFAWDVLAPGGRLAAISF 242 Query: 251 HSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR VK+F R+ G + I + + +T++ + PT +VA N R++SA Sbjct: 243 HSLEDRRVKRFLVDRARGCICPPDLPICACGRTPEGELLTRRAIAPTAGEVAHNPRAKSA 302 Query: 310 KLRAGMRTVERS 321 LR ++ E S Sbjct: 303 HLRGALKLKEMS 314 >gi|156551077|ref|XP_001602807.1| PREDICTED: similar to GA13173-PA [Nasonia vitripennis] Length = 426 Score = 204 bits (518), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 130/327 (39%), Positives = 182/327 (55%), Gaps = 35/327 (10%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 H PV+L++ I L +PG I+D TFGAGG+SR + +V ALDRD A + +E Sbjct: 97 HTPVMLKETIEYLKLSPGDTIVDMTFGAGGHSRKILESVPHVTIFALDRDEVAHNYAKEL 156 Query: 78 MRDYKEQFSLFQATFSQLQDY-----VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 Y Q FS+L V + +DG +FD G SSMQ D +RGF K+GP Sbjct: 157 AEKYPGQVIPLLGRFSELPQLLGKYKVKENSIDGFLFDFGCSSMQFDRPERGFMISKNGP 216 Query: 133 LDMRMS---C-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQT 187 LDMRM C +A+DV+ +A+ +DL IL GEEK+A +IA AI++ R + +T Sbjct: 217 LDMRMDGFRCPEEPTAADVLARADERDLYHILKYYGEEKRAKKIARAIIEARYTFRSLRT 276 Query: 188 TQDLSSLIQKTVYFSKNNR------IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 TQ+L+ LI+ +++ S N H AT++FQALRIFVNNE+ E+ G+ AEK LK Sbjct: 277 TQELAKLIE-SLFPSDINTDQIGRFQHSATKTFQALRIFVNNELNEINHGIVIAEKLLKI 335 Query: 242 GGLLIVVSFHSLEDRLVKKFFAS---------------RSGKVMAVRHMIPSNAHPAVFQ 286 G +I +SFHSLED +VK+ + GKV + I + + Sbjct: 336 NGRMITISFHSLEDTIVKRHLSGNVTDSVANQLPLRYRNYGKVWTCKEDI-MELTESPWM 394 Query: 287 SITKKVVVPTQEDVAFNRRSRSAKLRA 313 + K ++ PT E+V +N RSRSAK RA Sbjct: 395 MLHKHILSPTDEEVYYNPRSRSAKFRA 421 >gi|253689961|ref|YP_003019151.1| S-adenosyl-methyltransferase MraW [Pectobacterium carotovorum subsp. carotovorum PC1] gi|262824751|sp|C6DEV1|RSMH_PECCP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|251756539|gb|ACT14615.1| S-adenosyl-methyltransferase MraW [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 314 Score = 204 bits (518), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 123/309 (39%), Positives = 186/309 (60%), Gaps = 16/309 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + LN G + +D TFG GG+SR ++G ++A+DRDP A+ + Sbjct: 7 HTTVLLDEAVNGLNIRSGGIYIDGTFGRGGHSRLILSQLGPEGRLLAIDRDPQAIEAAK- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + D + FS+ FS + +YV + G +DGV+ DLGVSS Q+D +RGFSF + GP Sbjct: 66 AIDDPR--FSIIHGPFSAMAEYVAELGLTGQIDGVLLDLGVSSPQLDDPERGFSFMRDGP 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G+SA++ + +A D+ +L GEE+ A RIA AIV+R ++ P T++L Sbjct: 124 LDMRMDPTRGLSAAEWLMKAEADDIVWVLKTFGEERFAKRIARAIVERNRTEPMTRTKEL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI + ++ HPATRSFQA+RI++N+E+EE+ + L A L G L V+SFH Sbjct: 184 AELIAAASPVREKHK-HPATRSFQAIRIYINSELEEIERALEGALSVLAPQGRLSVISFH 242 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSI--TKKVVVPTQEDVAFNRRSR 307 SLEDR+VK+F SR +V A + Q++ K ++P++ +VA N R+R Sbjct: 243 SLEDRIVKRFIRHQSRGPQVPAGLPLTEEQLRSQGGQTLKAVGKKLMPSEAEVAENPRAR 302 Query: 308 SAKLRAGMR 316 S+ LR R Sbjct: 303 SSVLRFAER 311 >gi|269137987|ref|YP_003294687.1| S-adenosyl-methyltransferase MraW [Edwardsiella tarda EIB202] gi|267983647|gb|ACY83476.1| S-adenosyl-methyltransferase MraW [Edwardsiella tarda EIB202] gi|304558034|gb|ADM40698.1| S-adenosyl-methyltransferase MraW [Edwardsiella tarda FL6-60] Length = 313 Score = 204 bits (518), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 125/310 (40%), Positives = 188/310 (60%), Gaps = 19/310 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ +A LN + +D TFG GG+SR ++G+ +IA+DRDP A++ + Sbjct: 7 HKTVLLDEAVAGLNLRSDGIYIDGTFGRGGHSRLILSQLGAEGRLIAIDRDPQAIAAAAQ 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +FS+ FS L DYV + G +DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 67 ID---DPRFSIVHGPFSALADYVQEMGLSGRIDGILLDLGVSSPQLDDPERGFSFMRDGP 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G+SA+ + QA +D+ +L GEE+ A RIA AIV+R ++ P T++L Sbjct: 124 LDMRMDPSRGLSAAQWLMQAEEEDIAWVLKTFGEERFAKRIARAIVERNRTEPLTRTREL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++LI + F + ++ HPATRSFQA+RI++N+E++E+ + L A AL G L V+SFH Sbjct: 184 AALISEASPFKEKHK-HPATRSFQAIRIYINSELDEIERALEGALVALAPQGRLSVISFH 242 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRRS 306 SLEDRLVK+F S + + + A +++ K+ +P + +VA N R+ Sbjct: 243 SLEDRLVKRFMRQYSRGPQVPKGLPLTEAQLQAQGGPQLKALGKR--MPGEREVADNPRA 300 Query: 307 RSAKLRAGMR 316 RS+ LR R Sbjct: 301 RSSVLRVAER 310 >gi|91228506|ref|ZP_01262428.1| S-adenosyl-methyltransferase [Vibrio alginolyticus 12G01] gi|269967393|ref|ZP_06181453.1| S-adenosyl-methyltransferase mraW [Vibrio alginolyticus 40B] gi|91187940|gb|EAS74250.1| S-adenosyl-methyltransferase [Vibrio alginolyticus 12G01] gi|269827981|gb|EEZ82255.1| S-adenosyl-methyltransferase mraW [Vibrio alginolyticus 40B] Length = 316 Score = 203 bits (517), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 125/309 (40%), Positives = 177/309 (57%), Gaps = 20/309 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H+ VLL + I L P V +D TFG GG+SR+ K+G N + ++DRDP A++ E Sbjct: 7 HISVLLNESIDGLAIKPDGVYIDGTFGRGGHSRTILSKLGENGRLYSIDRDPQAIA---E 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F++ FS + +Y + G VDGV+ DLGVSS Q+D +RGFSF K GP Sbjct: 64 AGKINDPRFTIIHGPFSGIAEYAEEYGLVGKVDGVLLDLGVSSPQLDDAERGFSFMKDGP 123 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ---SAPFQTT 188 LDMRM SG+ S + +A++ D+T ++ GE+K A RIA AIV R+ + P T Sbjct: 124 LDMRMDPTSGVPVSQWLMEADLDDITWVIREFGEDKHARRIAKAIVAYREDEENEPMVRT 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ LI S + HPATR+FQA RI++N+E+EE+ L+ A L G L V+ Sbjct: 184 GQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAASILAPEGRLSVI 243 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSN-----AHPAVFQSITKKVVVPTQEDVAFN 303 SFHSLEDR+VK+F S K V H IP A + K + P+++++ N Sbjct: 244 SFHSLEDRMVKRFIRKES-KGPEVPHGIPMTEEQIRALGSANMKAVSKAIKPSKQEIEMN 302 Query: 304 RRSRSAKLR 312 RSRS+ LR Sbjct: 303 PRSRSSVLR 311 >gi|294635001|ref|ZP_06713518.1| S-adenosyl-methyltransferase MraW [Edwardsiella tarda ATCC 23685] gi|291091600|gb|EFE24161.1| S-adenosyl-methyltransferase MraW [Edwardsiella tarda ATCC 23685] Length = 314 Score = 203 bits (517), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 126/311 (40%), Positives = 189/311 (60%), Gaps = 20/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ +A LN + +D TFG GG+SR ++G+ +IA+DRDP A++ Sbjct: 7 HKTVLLDEAVAGLNLRSDGIYIDGTFGRGGHSRLILSQLGAEGRLIAIDRDPQAIAA--- 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +FS+ FS L +YV + G +DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 64 AAQINDARFSIVHGPFSALAEYVEELGLVGRIDGILLDLGVSSPQLDDPERGFSFMRDGP 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTTQD 190 LDMRM S G+SA+D + QA +D+ +L GEE+ A RIA AIV+R R AP T++ Sbjct: 124 LDMRMDPSRGLSAADWLMQAEEEDIAWVLKTFGEERFAKRIARAIVERNRTEAPLTRTRE 183 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L++LI + F + ++ HPATRSFQA+RI++N+E++E+ + L A L G L V+SF Sbjct: 184 LAALISEASPFKEKHK-HPATRSFQAIRIYINSELDEIERALEGALAVLAPAGRLSVISF 242 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305 HSLEDRLVK+F S + + + A +++ K+ +P +++VA N R Sbjct: 243 HSLEDRLVKRFIRQYSRGPQVPKGLPLTEAQLQAQGGPQLKALGKR--MPGEQEVANNPR 300 Query: 306 SRSAKLRAGMR 316 +RS+ LR R Sbjct: 301 ARSSVLRVAER 311 >gi|254976251|ref|ZP_05272723.1| S-adenosyl-methyltransferase [Clostridium difficile QCD-66c26] gi|255093637|ref|ZP_05323115.1| S-adenosyl-methyltransferase [Clostridium difficile CIP 107932] gi|255315386|ref|ZP_05356969.1| S-adenosyl-methyltransferase [Clostridium difficile QCD-76w55] gi|255518051|ref|ZP_05385727.1| S-adenosyl-methyltransferase [Clostridium difficile QCD-97b34] gi|255651167|ref|ZP_05398069.1| S-adenosyl-methyltransferase [Clostridium difficile QCD-37x79] gi|260684233|ref|YP_003215518.1| S-adenosyl-methyltransferase MraW [Clostridium difficile CD196] gi|260687892|ref|YP_003219026.1| S-adenosyl-methyltransferase MraW [Clostridium difficile R20291] gi|306521014|ref|ZP_07407361.1| S-adenosyl-methyltransferase MraW [Clostridium difficile QCD-32g58] gi|260210396|emb|CBA64792.1| S-adenosyl-methyltransferase [Clostridium difficile CD196] gi|260213909|emb|CBE05954.1| S-adenosyl-methyltransferase [Clostridium difficile R20291] Length = 311 Score = 203 bits (517), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 118/308 (38%), Positives = 175/308 (56%), Gaps = 13/308 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 HV VLL + I LN P V +D T G G+S+ K S+ I D+D A+S +E Sbjct: 5 HVSVLLNECIENLNIKPDGVYVDCTMGGAGHSKEIVKKLSDKGLFIGFDQDKNAISTAKE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + +Y+ + + F +++ + GV DGV+ DLGVSS Q+D DRGFS+ + PL Sbjct: 65 RLSEYESRVKFVHSNFENIKEELEKIGVYKIDGVLADLGVSSHQLDEADRGFSYMQDAPL 124 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM SA DVVN +LT+I+ GE+ A RIA IV+ R + P +TT L Sbjct: 125 DMRMDVRCEFSAYDVVNTYTEDELTKIIKDYGEDNWAKRIAKFIVEERANKPIETTGKLV 184 Query: 193 SLIQKTVYFSKNNRI---HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 +I+K + K RI HPA R+FQA+RI VNNE+ + + + A + GG + +++ Sbjct: 185 DIIKKAI--PKKARIDGPHPAKRTFQAIRIEVNNELGVITKMINDASSIMNKGGRICIIT 242 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK F + + +H+ I + + IT+K ++P++E++ N RSRS Sbjct: 243 FHSLEDRIVKNAFKHLASDCICPQHLPICQCDKESEVKIITRKPILPSEEEIEVNPRSRS 302 Query: 309 AKLRAGMR 316 AKLR + Sbjct: 303 AKLRVAEK 310 >gi|58583456|ref|YP_202472.1| S-adenosyl-methyltransferase MraW [Xanthomonas oryzae pv. oryzae KACC10331] gi|58428050|gb|AAW77087.1| cell division protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 353 Score = 203 bits (517), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 124/299 (41%), Positives = 175/299 (58%), Gaps = 11/299 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HVPVL +V+ L LD TFG GG++R + G ++ +D+DP A++ ++ Sbjct: 24 HVPVLYTQVLDGLQVTENGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDPEAIAVAEQ 83 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 T + S+ + +F+ L V VDG++ DLGVSS Q++ RGFSF K GPLDMR Sbjct: 84 TF-GGDARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLEVAGRGFSFGKDGPLDMR 142 Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M SG SA+ + QA +++ +L GEE+Q+ RIA AIV RR P T L+ LI Sbjct: 143 MDPDSGQSAAQWLAQATDREIADVLWTYGEERQSRRIARAIVARRAEQPLLRTAQLADLI 202 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 +V +++ HPATRSFQA+RI++N E+++L GL +A ALK GG L V+SFHSLED Sbjct: 203 -ASVMPRGDSKTHPATRSFQAIRIYINRELDDLETGLDAALAALKPGGRLAVISFHSLED 261 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRSAKLR 312 R+VK+F A R K +P A P V Q ++ + E + N R+RSA LR Sbjct: 262 RIVKQFMA-RYAKAPPSNRRLP-EAQPFVPTLQLVSGAIKADDAE-LNVNPRARSAVLR 317 >gi|68565414|sp|Q5GW34|RSMH_XANOR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 337 Score = 203 bits (517), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 124/299 (41%), Positives = 175/299 (58%), Gaps = 11/299 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HVPVL +V+ L LD TFG GG++R + G ++ +D+DP A++ ++ Sbjct: 8 HVPVLYTQVLDGLQVTENGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDPEAIAVAEQ 67 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 T + S+ + +F+ L V VDG++ DLGVSS Q++ RGFSF K GPLDMR Sbjct: 68 TF-GGDARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLEVAGRGFSFGKDGPLDMR 126 Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M SG SA+ + QA +++ +L GEE+Q+ RIA AIV RR P T L+ LI Sbjct: 127 MDPDSGQSAAQWLAQATDREIADVLWTYGEERQSRRIARAIVARRAEQPLLRTAQLADLI 186 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 +V +++ HPATRSFQA+RI++N E+++L GL +A ALK GG L V+SFHSLED Sbjct: 187 -ASVMPRGDSKTHPATRSFQAIRIYINRELDDLETGLDAALAALKPGGRLAVISFHSLED 245 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRSAKLR 312 R+VK+F A R K +P A P V Q ++ + E + N R+RSA LR Sbjct: 246 RIVKQFMA-RYAKAPPSNRRLP-EAQPFVPTLQLVSGAIKADDAE-LNVNPRARSAVLR 301 >gi|53729126|ref|ZP_00134091.2| COG0275: Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207498|ref|YP_001052723.1| S-adenosyl-methyltransferase MraW [Actinobacillus pleuropneumoniae L20] gi|263440608|sp|A3MY82|RSMH_ACTP2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|126096290|gb|ABN73118.1| S-adenosyl-methyltransferase MraW [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 313 Score = 203 bits (517), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 125/313 (39%), Positives = 183/313 (58%), Gaps = 18/313 (5%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPF 69 ++ T+ H+ VLL + + L P + +D TFG GG+SR S +IA DRDP Sbjct: 1 MNDTVHKHITVLLHEAVDGLAIKPNGIYIDGTFGRGGHSRLILSKLSEQGRLIATDRDPR 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGF 125 A++ T+ D + F + FS + + G +DG++ DLGVSS Q+D +RGF Sbjct: 61 AIAEAN-TINDAR--FQIVHTAFSAIPEVCEQLGLTGKIDGILLDLGVSSPQLDDAERGF 117 Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF + GPLDMRM + G+SA++ + Q +V DL +L GEE+ A RIA A+V +SA Sbjct: 118 SFMRDGPLDMRMDTTKGLSAAEWLAQVSVDDLAWVLKTFGEERFAKRIAQAVVSYNKSAT 177 Query: 185 --FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 T L+ +I V F K+ HPATRSFQA+RIF+N+E++EL + L+SA L Sbjct: 178 DKISRTLQLAQIIADAVPF-KDKHKHPATRSFQAIRIFINSELDELEKALQSALSVLAPE 236 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP---SNAHPAVFQSITKKVVVPTQED 299 G L ++SFHSLEDR+VK+F ++ K M V +P S + + I K ++P++ + Sbjct: 237 GRLSIISFHSLEDRMVKQFM-KKNSKGMGVPKGLPILESELNKNIPLKIIGKAIMPSEAE 295 Query: 300 VAFNRRSRSAKLR 312 + N RSRSA LR Sbjct: 296 IEANPRSRSAVLR 308 >gi|309792354|ref|ZP_07686822.1| S-adenosyl-methyltransferase MraW [Oscillochloris trichoides DG6] gi|308225575|gb|EFO79335.1| S-adenosyl-methyltransferase MraW [Oscillochloris trichoides DG6] Length = 317 Score = 203 bits (517), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 126/303 (41%), Positives = 175/303 (57%), Gaps = 16/303 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H+ VL + V A LNP PG + LD T G GG++ + + +I +D DP A++ Q Sbjct: 16 HISVLAQPVQAALNPRPGGIYLDGTLGGGGHALAVLQAAQPDGRLIGIDADPAALAAAQA 75 Query: 77 TMRDYK---EQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130 M + F F + G+ DG++ DLGVSS Q+D +RGFSF Sbjct: 76 RMAAANIPASSYQFFHGRFGAMAQIARQAGITSCDGILLDLGVSSPQLDWAERGFSFSAD 135 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 GPLDMR+ + G +A+D+VN + + L I+ GEE+ + +IA IV+RR+ APF+ T Sbjct: 136 GPLDMRLDPTQGHTAADLVNTLDEQYLADIIFRYGEERGSRKIARLIVERRKHAPFERTA 195 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 DL++L+ + V RIHPATR+FQALRI VN E+E+L L A L +GG L V+S Sbjct: 196 DLAALVARAVGRGGRERIHPATRTFQALRIAVNTELEQLEIALPQAVDLLHSGGRLAVIS 255 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDR+VK F + SG + +N P + ITKK + E++A N RSRSA Sbjct: 256 FHSLEDRIVKHFLRAESG------YGGNANPRPPRLRIITKKPLEADAEELAANPRSRSA 309 Query: 310 KLR 312 KLR Sbjct: 310 KLR 312 >gi|117620544|ref|YP_858331.1| S-adenosyl-methyltransferase MraW [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|263446603|sp|A0KPY0|RSMH_AERHH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|117561951|gb|ABK38899.1| S-adenosyl-methyltransferase MraW [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 312 Score = 203 bits (516), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 128/312 (41%), Positives = 184/312 (58%), Gaps = 16/312 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQ 75 +H+ VLL + + L P + +D TFG GG+SR + +G N +IA+DRDP A++ Sbjct: 6 EHITVLLHEAVEGLAIKPDGIYVDGTFGRGGHSRLILQQLGPNGRLIAIDRDPQAIA--- 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E + +F + FS + Y+ ++G VDG + DLGVSS Q+D +RGFSF K G Sbjct: 63 EAAKIQDPRFEIVHGPFSGIASYLDERGLLGKVDGFLLDLGVSSPQLDDAERGFSFMKDG 122 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM SG SA++ + +A+V D+ +L GEE+ A +IA AIV R + P+ T+ Sbjct: 123 PLDMRMDPTSGQSAAEWLARADVDDIAWVLKTFGEERFAKKIARAIVHDRVTEPYVRTRQ 182 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ +I + V SK H ATRSFQA+RI++N+E++E+ L A + L G L V+SF Sbjct: 183 LAEMIAR-VNPSKEKGKHAATRSFQAIRIYINSELDEIETALNGALQVLAPEGRLSVISF 241 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSITK--KVVVPTQEDVAFNRRSR 307 HSLEDRLVK F + K V H IP + A A + + K + P++ +V N RSR Sbjct: 242 HSLEDRLVKHFI-RKHEKGPEVPHGIPLTEAQLAGGRKLKSVGKALKPSEHEVNENSRSR 300 Query: 308 SAKLRAGMRTVE 319 S+ LR R E Sbjct: 301 SSVLRVAQRLAE 312 >gi|110804146|ref|YP_687666.1| S-adenosyl-methyltransferase MraW [Shigella flexneri 5 str. 8401] gi|123147294|sp|Q0T8B5|RSMH_SHIF8 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|110613694|gb|ABF02361.1| putative apolipoprotein [Shigella flexneri 5 str. 8401] Length = 313 Score = 203 bits (516), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 124/311 (39%), Positives = 187/311 (60%), Gaps = 19/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + LN P + +D TFG GG+SR ++G ++A+DRDP A++ + Sbjct: 7 HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 T+ D + FS+ FS L +YV ++ +DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 66 TIDDPR--FSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G SA++ + A D+ +L GEE A RIA AIV+R + P T++L Sbjct: 124 LDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEEHFAKRIARAIVERNREQPMTRTKEL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L ++SFH Sbjct: 184 AEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISFH 242 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306 SLEDR+VK+F SR +V A M +++ K ++P +++VA N R+ Sbjct: 243 SLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGK--LMPGEDEVAENPRA 300 Query: 307 RSAKLRAGMRT 317 RS+ LR RT Sbjct: 301 RSSVLRIAERT 311 >gi|39998167|ref|NP_954118.1| S-adenosyl-methyltransferase MraW [Geobacter sulfurreducens PCA] gi|42559425|sp|P60396|RSMH_GEOSL RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|39985113|gb|AAR36468.1| S-adenosyl-methyltransferase MraW [Geobacter sulfurreducens PCA] gi|298507105|gb|ADI85828.1| SAM-dependent membrane protein methyltransferase MraW [Geobacter sulfurreducens KN400] Length = 311 Score = 203 bits (516), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 125/304 (41%), Positives = 174/304 (57%), Gaps = 11/304 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H PV+ +V+ L+P PG V +D T G G++R + S +I DRDP A+ +E Sbjct: 5 HRPVMPAEVLEYLSPRPGGVYVDGTLGGAGHARLILEATSPDGMLIGFDRDPAALEVARE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + E+F FS++ + + GVDGV + D+GVSS Q+D +RGFSF PL Sbjct: 65 RLALFGERFRPVPGNFSEMGRVLAELGVDGVDGFLLDVGVSSHQLDTAERGFSFLTDAPL 124 Query: 134 DMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + +A+D+VN N +L RI+ GEE+ A RIA IVK R P + T L Sbjct: 125 DMRMNTLVPGTAADLVNDLNEHELARIIKEYGEERWARRIASFIVKARVDGPIERTLQLV 184 Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + + RIHPATR+FQALRI VN+E+ L +GL SA L+ GG +V+SFH Sbjct: 185 DIIKGAIPRGAWEERIHPATRTFQALRIAVNDELGSLERGLESALGLLRPGGRGVVISFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK F R + +P V + +T + VV +VA N R+RSA Sbjct: 245 SLEDRIVKTMF-RRYAQGCTCPKELPRCVCGGVPRLRILTGRPVVAGDVEVAENPRARSA 303 Query: 310 KLRA 313 KLRA Sbjct: 304 KLRA 307 >gi|284030811|ref|YP_003380742.1| S-adenosyl-methyltransferase MraW [Kribbella flavida DSM 17836] gi|283810104|gb|ADB31943.1| S-adenosyl-methyltransferase MraW [Kribbella flavida DSM 17836] Length = 324 Score = 203 bits (516), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 121/300 (40%), Positives = 182/300 (60%), Gaps = 22/300 (7%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74 HVPV+L++V+ALL PA PG V++DAT G GG+S +F + + +I LDRDP A+ Sbjct: 10 HVPVMLDRVVALLAPALQQPGSVLVDATLGLGGHSEAFLQRCPEARLIGLDRDPAALRLA 69 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E + Y + +L A + +L + + GV DG++FDLGVSSMQ+D DRGF++ + Sbjct: 70 GERLAPYAGRTTLVHAVYDELPRVLDELGVPAIDGILFDLGVSSMQLDEADRGFAYAQDA 129 Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + +A+DV+N + DL RIL GEEK A +IA IV+ R++ PF + Sbjct: 130 PLDMRMDPTAPTTAADVLNTYSAADLARILFQYGEEKFARKIADRIVRARETEPFSHSAR 189 Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 LS L++ + ++ HPA R+FQALRI VN+E++ L + L +A AL G ++V+S Sbjct: 190 LSELVRDAIPQAARRTGGHPAKRTFQALRIEVNSELDVLRRALPAALGALALHGRIVVMS 249 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSN------AHPAVFQSITKKVVVPTQEDVAFN 303 +HSLEDR+ K+ A+ A R +P + H + +T+ PT+++VA N Sbjct: 250 YHSLEDRITKQTLAA------ATRSDVPDDLPVIPAGHEPYLKLLTRGAERPTEDEVAEN 303 >gi|113869234|ref|YP_727723.1| S-adenosyl-methyltransferase MraW [Ralstonia eutropha H16] gi|123032664|sp|Q0K6L6|RSMH_RALEH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|113528010|emb|CAJ94355.1| conserved hypothetical protein [Ralstonia eutropha H16] Length = 333 Score = 203 bits (516), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 127/315 (40%), Positives = 192/315 (60%), Gaps = 35/315 (11%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + L P V +D TFG GG+SR+ ++G + ++A D+DP A++ Sbjct: 14 HRTVLLDEAVDALVWRPDGVYVDGTFGRGGHSRAVLARLGPDGALVAFDKDPAAIAEAG- 72 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 T++D + FS+ A+F+ + + + +G V GV+ DLG+SS QID RGFSF+ GPLDM Sbjct: 73 TIKDAR--FSIEHASFAAMAERLSGRGHVAGVLLDLGISSPQIDEAARGFSFRFEGPLDM 130 Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR----QSAPFQTTQD 190 RM + GI+A+ + QA+ +D+ R++ GEE+ A +IA AIV RR P TT D Sbjct: 131 RMDTTRGITAAQWLAQADEQDIARVIRDYGEERFAVQIAKAIVARRSEPGDGGPIATTAD 190 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L++L+ K V + + PATR+FQALRI VN E+E+L +GL++A + L+ GG L+V+SF Sbjct: 191 LAALVAKAVKTREKGQ-DPATRTFQALRIHVNQELEDLERGLKAAYELLQVGGRLVVISF 249 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSITKKVVVPT------------Q 297 HSLEDR+VK+F A+ H P +A PA+ ++ + +P Sbjct: 250 HSLEDRIVKRFMAA---------HARPQQDADPALRRAPLRAADLPQPTLRLLGRYKPGP 300 Query: 298 EDVAFNRRSRSAKLR 312 E+VA N R+RSA +R Sbjct: 301 EEVAANPRARSAVMR 315 >gi|323144058|ref|ZP_08078702.1| S-adenosyl-methyltransferase MraW [Succinatimonas hippei YIT 12066] gi|322416171|gb|EFY06861.1| S-adenosyl-methyltransferase MraW [Succinatimonas hippei YIT 12066] Length = 316 Score = 203 bits (516), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 129/312 (41%), Positives = 172/312 (55%), Gaps = 20/312 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQE 76 H+PVLL + +A LN P + +DATFG GG+SR K + ALDRD A+ + Sbjct: 5 HIPVLLNETLAGLNINPDGIYVDATFGRGGHSREILKRLNKNGRLYALDRDLSAIEAAKS 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E+FS+ A FSQL++ D G V+G++ D+GVSS Q+D RGFSF K GP Sbjct: 65 IA---DERFSIVHARFSQLKEVCEDFGILGKVNGILMDIGVSSPQLDDASRGFSFDKDGP 121 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S I A+ +VN + KDL I GEE+ A ++A+AIV++R+ PF TT L Sbjct: 122 LDMRMDQSAKIDAALIVNTYDAKDLAYIFKTYGEERFAGKVANAIVRQREKTPFTTTLAL 181 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI ++ K H ATR FQALRI VN+E+EEL L + L G L V+SFH Sbjct: 182 ADLISASIP-GKPGPKHKATRCFQALRIAVNSELEELKSALDGSIDVLDKDGRLCVISFH 240 Query: 252 SLEDRLVKKFFASRS-------GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 SLEDR+VK F S G + + Q I+ + T +++ N Sbjct: 241 SLEDRIVKTFIRENSEGPKLPRGLPITDEELAELKLKSCTLQKIS-GAIKATDAEISQNP 299 Query: 305 RSRSAKLRAGMR 316 RSRSA LR R Sbjct: 300 RSRSAVLRVAAR 311 >gi|313901510|ref|ZP_07834958.1| S-adenosyl-methyltransferase MraW [Thermaerobacter subterraneus DSM 13965] gi|313468223|gb|EFR63689.1| S-adenosyl-methyltransferase MraW [Thermaerobacter subterraneus DSM 13965] Length = 383 Score = 203 bits (516), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 124/302 (41%), Positives = 172/302 (56%), Gaps = 15/302 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+PVLL +V+A L P G +D T GAGG++ + + ++ +DRDP A++ Sbjct: 66 HIPVLLAEVLAYLQPERGGRFVDGTVGAGGHAAAILEAAGEAGRLLGIDRDPQALALAAA 125 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + ++ L F L ++ G VDG++ DLGVSSMQ+D RGFS+Q PL Sbjct: 126 RLAPFGDRVRLVHGDFRDLGRHLAAAGWKAVDGILLDLGVSSMQLDDPARGFSYQVDAPL 185 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S ++A+D+VN A+ L R + GEE+ A RIA IV RQ P TT L Sbjct: 186 DMRMDPSQPVTAADLVNTASRDQLARWIAEYGEERWAGRIADFIVAARQRRPITTTLQLV 245 Query: 193 SLIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ V R HPA R+FQALRI VNNE+E L L+ A L+ GG L+V+SFH Sbjct: 246 EVIKDAVPARARRRGGHPARRTFQALRIAVNNELEGLEAFLQEAAGYLRPGGRLVVISFH 305 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR VK+ F + +A + A F+ +T++ V P E+ N R+RSAKL Sbjct: 306 SLEDRAVKRAF-----RALAAPQV--GGKEGAAFRILTRRPVTPGDEEERRNPRARSAKL 358 Query: 312 RA 313 RA Sbjct: 359 RA 360 >gi|242238092|ref|YP_002986273.1| S-adenosyl-methyltransferase MraW [Dickeya dadantii Ech703] gi|263446348|sp|C6C9K0|RSMH_DICDC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|242130149|gb|ACS84451.1| S-adenosyl-methyltransferase MraW [Dickeya dadantii Ech703] Length = 313 Score = 203 bits (516), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 122/308 (39%), Positives = 176/308 (57%), Gaps = 15/308 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76 H VLL++ + LN + +D TFG GG+SR S ++A+DRDP AVS Sbjct: 7 HTTVLLDEAVNGLNIRSNGIYIDGTFGRGGHSRLILSHLGTDGQLLAIDRDPQAVSAASA 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +FS+ FS L DYV ++G +DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 67 I---HDARFSIIHGPFSSLADYVAERGLVGRIDGILLDLGVSSPQLDDPERGFSFMRDGP 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G+SA++ + A D+ +L GEE+ A RIA AIV+R + P T+ L Sbjct: 124 LDMRMDPSRGVSAAEWLMNAEADDIAWVLKTFGEERFAKRIARAIVERNRVEPLTRTKAL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI + ++ HPATRSFQA+RI++N+E++E+ + L A + L G L V+SFH Sbjct: 184 AELIAAACPIREKHK-HPATRSFQAIRIYINSELDEIERALEGALQVLAPHGRLSVISFH 242 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNRRSRS 308 SLEDR+VK+F S + + A T K V +P++ +V N R+RS Sbjct: 243 SLEDRIVKRFIRQHSRGPQVPAGLPLTEAQLKSQGGRTLKAVGKMMPSESEVGENPRARS 302 Query: 309 AKLRAGMR 316 + LR R Sbjct: 303 SVLRFAER 310 >gi|271502050|ref|YP_003335076.1| S-adenosyl-methyltransferase MraW [Dickeya dadantii Ech586] gi|270345605|gb|ACZ78370.1| S-adenosyl-methyltransferase MraW [Dickeya dadantii Ech586] Length = 313 Score = 203 bits (516), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 127/311 (40%), Positives = 184/311 (59%), Gaps = 19/311 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQ 75 +H VLL++ + LN + +D TFG GG+SR S ++A+DRDP AV+ Sbjct: 6 NHTTVLLDEAVNGLNIRSNGIYIDGTFGRGGHSRLILSHLGPEGRLLAIDRDPQAVAVAN 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 T+ D + FS+ FS+L DYV ++G +DG++ DLGVSS Q+D +RGFSF + G Sbjct: 66 -TIDDAR--FSIIHGPFSELADYVDERGLTGKIDGILLDLGVSSPQLDDPERGFSFMRDG 122 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + G SA++ + +A D+ +L GEE+ A RIA AIV+R + P T+ Sbjct: 123 PLDMRMDPTRGQSAAEWLMKAEADDIAWVLKTFGEERFAKRIARAIVERNRIDPLTRTKA 182 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ LI + ++ HPATRSFQA+RI++N+E+EE+ + L A K L G L V+SF Sbjct: 183 LAELIAAASPIREKHK-HPATRSFQAIRIYINSELEEIERALDGALKVLAPEGRLSVISF 241 Query: 251 HSLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHP---AVFQSITKKVVVPTQEDVAFNRR 305 HSLEDR+VK+F SR +V A + +SI K ++P ++VA N R Sbjct: 242 HSLEDRIVKRFIRQHSRGPQVPAGLPLTEEQLRSQGGQTLKSIGK--MMPPDDEVAENPR 299 Query: 306 SRSAKLRAGMR 316 +RS+ LR R Sbjct: 300 ARSSVLRFAER 310 >gi|126435853|ref|YP_001071544.1| S-adenosyl-methyltransferase MraW [Mycobacterium sp. JLS] gi|262825143|sp|A3Q1M6|RSMH_MYCSJ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|126235653|gb|ABN99053.1| S-adenosyl-methyltransferase MraW [Mycobacterium sp. JLS] Length = 324 Score = 203 bits (516), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 123/310 (39%), Positives = 182/310 (58%), Gaps = 18/310 (5%) Query: 19 DHVPVLLEKVIALLNPA-----P---GKVILDATFGAGGYSRSFCK--MGSNVIALDRDP 68 +H+PVLL++ + LL PA P G V++DAT GAGG++ F G ++I LDRDP Sbjct: 2 EHIPVLLDRCVELLTPALTRRNPDGRGAVLVDATLGAGGHAHRFLSDLPGLHLIGLDRDP 61 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGF 125 A+ E + + ++ SL + + + D + GV G +FDLGVSSMQ+D +RGF Sbjct: 62 QALQIAGERLAPFGDRVSLVRTRYDGIDDALAQTGVAEVSGFLFDLGVSSMQLDRTERGF 121 Query: 126 SFQKSGPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 S+ PLDMRM S + ++A+DVVN KD+TRIL GEE+ A+RIA IV+RR P Sbjct: 122 SYSADAPLDMRMDSDAPLTAADVVNTFAEKDITRILREFGEERFAARIAKHIVRRR---P 178 Query: 185 FQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 TT +L L+ + ++ HPA R+FQALRI VN+E++ L + +A AL+ GG Sbjct: 179 LNTTGELVELLYDAIPAPARRTGGHPAKRTFQALRIAVNSELDSLRAAIPAALGALETGG 238 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 ++V+++ SLEDR+VK FA+ + + H F ++T+ T E++ N Sbjct: 239 RIVVMAYQSLEDRIVKTEFAAATASRTPPGLPVELPGHEPEFVALTRGAERATPEEIERN 298 Query: 304 RRSRSAKLRA 313 RS +LRA Sbjct: 299 PRSAPVRLRA 308 >gi|94312067|ref|YP_585277.1| S-adenosyl-methyltransferase MraW [Cupriavidus metallidurans CH34] gi|123259838|sp|Q1LIL8|RSMH_RALME RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|93355919|gb|ABF10008.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Cupriavidus metallidurans CH34] Length = 325 Score = 203 bits (516), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 126/324 (38%), Positives = 197/324 (60%), Gaps = 35/324 (10%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMG--SNVIALDRDPFAVSCGQE 76 H VLL++ + L P +D TFG GG+SR+ ++G ++A D+DP A++ Sbjct: 14 HRTVLLDEAVDALVWRPDGAYVDGTFGRGGHSRAVLARLGPAGTLVAFDKDPAAIAEAG- 72 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 T++D + FS+ A+F+++ D + +G V GV+ DLG+SS QID RGFSF+ GPLDM Sbjct: 73 TIKDAR--FSIEHASFAEMGDRLAGRGPVAGVLLDLGISSPQIDEAARGFSFRFEGPLDM 130 Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTTQD 190 RM + GI+A++ + QA+ +D+ R++ GEE+ A +IA AIV RR+ + TT D Sbjct: 131 RMDTTRGITAAEWLAQADEQDIARVIRDYGEERFALQIAKAIVARRRESGDGGALATTSD 190 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L++L+ K V + + PATR+FQALRI++N E+E+L +GL++A + L+ GG L+V+SF Sbjct: 191 LAALVAKAVKTREKGQ-DPATRTFQALRIYINQELEDLERGLKAAYELLQVGGRLVVISF 249 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPS-NAHPAVFQSITKKVVVPT------------Q 297 HSLEDR+VK+F + H P +A PA+ ++ + +P Sbjct: 250 HSLEDRIVKRFMQA---------HARPERDADPALRRAPLRAADLPQPTMKLLGRFKPGA 300 Query: 298 EDVAFNRRSRSAKLRAGMRTVERS 321 E+VA N R+RSA +R + E+S Sbjct: 301 EEVAGNPRARSAVMRVAEKLGEQS 324 >gi|307256031|ref|ZP_07537819.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306865453|gb|EFM97348.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 313 Score = 203 bits (516), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 126/313 (40%), Positives = 181/313 (57%), Gaps = 18/313 (5%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPF 69 ++ T+ H+ VLL + + L P + +D TFG GG+SR S +IA DRDP Sbjct: 1 MNDTVHKHITVLLHEAVDGLAIKPNGIYIDGTFGRGGHSRLILSKLSEQGRLIATDRDPR 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGF 125 A++ T+ D + F + FS + D G +DG++ DLGVSS Q+D +RGF Sbjct: 61 AIAEAN-TIDDTR--FQIVHTAFSAIPDVCEQLGLTGKIDGILLDLGVSSPQLDDAERGF 117 Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF + GPLDMRM + G+SA++ + Q + DL +L GEE+ A RIA A+V +SA Sbjct: 118 SFMRDGPLDMRMDTTKGLSAAEWLAQVSADDLAWVLKTFGEERFAKRIAQAVVSYNKSAT 177 Query: 185 --FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 T L+ +I V F K+ HPATRSFQA+RIF+N+E++EL + L+SA L Sbjct: 178 DKISRTLQLAQIIADAVPF-KDKHKHPATRSFQAIRIFINSELDELEKALQSALSVLAPE 236 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP---SNAHPAVFQSITKKVVVPTQED 299 G L ++SFHSLEDR+VK+F S K M V +P S + + I K ++P++ + Sbjct: 237 GRLSIISFHSLEDRMVKQFMKKNS-KGMGVPKGLPIFESELNKNIPLKIIGKAIMPSEAE 295 Query: 300 VAFNRRSRSAKLR 312 + N RSRSA LR Sbjct: 296 IEANPRSRSAVLR 308 >gi|269795582|ref|YP_003315037.1| S-adenosyl-methyltransferase MraW [Sanguibacter keddieii DSM 10542] gi|269097767|gb|ACZ22203.1| S-adenosyl-methyltransferase MraW [Sanguibacter keddieii DSM 10542] Length = 346 Score = 202 bits (515), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 122/329 (37%), Positives = 188/329 (57%), Gaps = 22/329 (6%) Query: 8 TMSSAIHHTIGD--------HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCK 56 T A+H D H+PVLL++ + LL PA PG V +D T G GG++ + + Sbjct: 6 TDGPAVHEEPADGPRETSDRHLPVLLDRCVELLAPALSVPGAVYVDCTLGMGGHTEAILE 65 Query: 57 MGSNV--IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDL 111 V I +DRDP A+ + + +F+ A + ++ D V ++G V G++ DL Sbjct: 66 RLPEVRVIGIDRDPQALELAGARLERFGSRFTGVHAVYDEIGDVVAEQGLTGVQGILMDL 125 Query: 112 GVSSMQIDCGDRGFSFQKSGPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQAS 170 GVSS+QID +RGFS+ + PLDMRM S + ++A+DV+N + +DL RIL GEE+ AS Sbjct: 126 GVSSLQIDERERGFSYAQDAPLDMRMDSTASLTAADVLNTYSERDLARILREYGEERFAS 185 Query: 171 RIAHAIVKRRQSAPFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELA 229 +IA +IV +R++ P++ + DL L++ + ++ +PA R+FQALRI VN E+E L Sbjct: 186 KIARSIVAKREARPWERSADLVDLVRACIPAATRKGTGNPAKRTFQALRIEVNGELEVLE 245 Query: 230 QGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQS 287 + L +A +AL GG ++V S+HSLEDRL K+ G V + H +P H Sbjct: 246 RALPAAVEALAVGGRIVVESYHSLEDRLTKRELG--RGAVSSAPHDLPVEPETHKPYLSL 303 Query: 288 ITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 +T+ + ++ N RS S +LRA R Sbjct: 304 LTRGAEEADEAELERNPRSASVRLRAAER 332 >gi|289640760|ref|ZP_06472931.1| S-adenosyl-methyltransferase MraW [Frankia symbiont of Datisca glomerata] gi|289509336|gb|EFD30264.1| S-adenosyl-methyltransferase MraW [Frankia symbiont of Datisca glomerata] Length = 359 Score = 202 bits (515), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 130/306 (42%), Positives = 191/306 (62%), Gaps = 14/306 (4%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSC 73 H PVL ++V+ALL PA P V++DAT G G++ + C + +I LDRDP A+ Sbjct: 23 HTPVLSDRVVALLAPALLRPEAVLVDATVGLAGHASALLDACPT-ARLIGLDRDPQALEH 81 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + D ++ +L A + QL + G V GV+FDLGVSS+Q+D +RGFS+ + Sbjct: 82 SRARLADRADRATLVHAVYDQLPTVLDALGLTEVHGVLFDLGVSSLQLDSDERGFSYSRD 141 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM G +A+DVVN + +LTRIL GEE+ A RIA A+V R PF ++ Sbjct: 142 APLDMRMDPGRGRTAADVVNTYDADELTRILRHYGEERFARRIASAVVAERAREPFVSSA 201 Query: 190 DLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ L+++T+ ++ N +PA R+FQALRI VN E+E LA+ L +A AL GG L+V+ Sbjct: 202 RLADLVRRTIPAATRRNGGNPAKRTFQALRIEVNGELEALARALPAALDALAVGGRLVVL 261 Query: 249 SFHSLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 ++HSLEDR+VK+ FA+R V +IP +A P + +T+ P+ ++VA N R+ Sbjct: 262 AYHSLEDRMVKRAFAARVRPDVPPDLPVIPPDAAP-TMRWLTRGGETPSADEVAANPRAS 320 Query: 308 SAKLRA 313 +AKLRA Sbjct: 321 AAKLRA 326 >gi|163846346|ref|YP_001634390.1| S-adenosyl-methyltransferase MraW [Chloroflexus aurantiacus J-10-fl] gi|222524111|ref|YP_002568582.1| S-adenosyl-methyltransferase MraW [Chloroflexus sp. Y-400-fl] gi|263445774|sp|A9WG80|RSMH_CHLAA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446400|sp|B9LKK0|RSMH_CHLSY RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|163667635|gb|ABY34001.1| S-adenosyl-methyltransferase MraW [Chloroflexus aurantiacus J-10-fl] gi|222447990|gb|ACM52256.1| S-adenosyl-methyltransferase MraW [Chloroflexus sp. Y-400-fl] Length = 301 Score = 202 bits (515), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 128/307 (41%), Positives = 181/307 (58%), Gaps = 24/307 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H PVLL +V+ +L P P LDAT G GG++ + + G ++ +D DP A++ Sbjct: 7 HTPVLLTEVLTMLAPRPAGQYLDATVGGGGHALAVLQAAQPGGRLLGIDADPAALAATAA 66 Query: 77 TMRDYK--EQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++ EQ L +F+ L G DG++FDLGVSS Q+D +RGFSF G Sbjct: 67 RLQAAGLIEQAVLCHGSFADLATLAATAGFGAFDGILFDLGVSSYQLDTPERGFSFTADG 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMR+ + G++A+D+VN+ + ++L I+ + GEE A RIA AIV+ R++ PFQ T + Sbjct: 127 PLDMRLDPTQGLTAADMVNRLSERELADIIFLYGEEHAARRIARAIVEHRRTQPFQRTAE 186 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ ++ + V ++ RIHPATR+FQALRI VN E++ L L A L GG L V+SF Sbjct: 187 LAEVVARAVG-GRHGRIHPATRTFQALRIAVNQELDRLRATLPQAVDLLAPGGRLAVISF 245 Query: 251 HSLEDRLVKKFF-ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK+F A SG+ +TKK +VPT +VA N R+RSA Sbjct: 246 HSLEDRIVKQFLRAEASGET-------------PRLTIVTKKPIVPTAAEVANNPRARSA 292 Query: 310 KLRAGMR 316 KLR R Sbjct: 293 KLRVATR 299 >gi|182414441|ref|YP_001819507.1| S-adenosyl-methyltransferase MraW [Opitutus terrae PB90-1] gi|262824715|sp|B1ZU25|RSMH_OPITP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|177841655|gb|ACB75907.1| S-adenosyl-methyltransferase MraW [Opitutus terrae PB90-1] Length = 306 Score = 202 bits (515), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 118/299 (39%), Positives = 165/299 (55%), Gaps = 6/299 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 H PVLL +V+ L P LD TFG GG++R+ + + V +ALDRDP A Sbjct: 5 HQPVLLREVLGFLAPRARGRYLDCTFGGGGHTRALLEAAAEVRVVALDRDPAAQPRAAAL 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 + E+F F +L + +P +G DGV+FD GVSS Q+D +RGFSF+ P DMRM Sbjct: 65 RETFGERFEFIDRDFGRLAE-LPHEGFDGVLFDFGVSSFQLDETERGFSFRHDAPADMRM 123 Query: 138 SC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 SG+ AS + A + L R + GEE+ RI AI R + T L+ LI Sbjct: 124 DPRSGVPASQWLETATEEMLVRAIRDFGEEQHWRRIVRAIRDARGTGALARTASLAELIA 183 Query: 197 KTVYFSKNN--RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 + + +IHPATR+FQ +RI VN+EI + + L +A L GG+L V+SFHSLE Sbjct: 184 AAIPACDRHAAKIHPATRAFQGVRIAVNDEIGAIERALPAAFAKLAPGGVLCVISFHSLE 243 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 DR K+FF G+ + P + + +T++ V P +++A N RSRSAKLRA Sbjct: 244 DRPAKQFFRRMCGQPESAADATPQDLRVKLADPLTRRPVTPADDELAANPRSRSAKLRA 302 >gi|269960233|ref|ZP_06174608.1| S-adenosyl-methyltransferase mraW [Vibrio harveyi 1DA3] gi|269835040|gb|EEZ89124.1| S-adenosyl-methyltransferase mraW [Vibrio harveyi 1DA3] Length = 316 Score = 202 bits (515), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 127/309 (41%), Positives = 175/309 (56%), Gaps = 20/309 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H+ VLL + I L P + +D TFG GG+SR+ K+G N + ++DRDP A++ E Sbjct: 7 HISVLLNESIDGLAIKPDGIYIDGTFGRGGHSRTILSKLGENGRLYSIDRDPQAIA---E 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F++ FS + Y D G VDGV+ DLGVSS Q+D +RGFSF K GP Sbjct: 64 AAKIDDPRFTIIHGPFSGMAQYAEDYGLVGKVDGVLLDLGVSSPQLDDAERGFSFMKDGP 123 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ---SAPFQTT 188 LDMRM SGI S + +A++ D+T ++ GE+K A RIA AIV R+ + P T Sbjct: 124 LDMRMDPTSGIPVSQWLMEADLDDITWVIREFGEDKHARRIAKAIVAYREDEENEPMVRT 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ LI S + HPATR+FQA RI++N+E+EE+ L+ A L G L V+ Sbjct: 184 GQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAASILAPEGRLSVI 243 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSN-----AHPAVFQSITKKVVVPTQEDVAFN 303 SFHSLEDR+VK+F S K V H IP A + K PT++++ N Sbjct: 244 SFHSLEDRMVKRFIRKES-KGPEVPHGIPMTEEQIRALGSANMKPIGKANKPTKQEIDMN 302 Query: 304 RRSRSAKLR 312 RSRS+ LR Sbjct: 303 PRSRSSVLR 311 >gi|189423747|ref|YP_001950924.1| S-adenosyl-methyltransferase MraW [Geobacter lovleyi SZ] gi|263447561|sp|B3E3Z0|RSMH_GEOLS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|189420006|gb|ACD94404.1| S-adenosyl-methyltransferase MraW [Geobacter lovleyi SZ] Length = 313 Score = 202 bits (515), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 128/305 (41%), Positives = 181/305 (59%), Gaps = 13/305 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQE 76 H+ VL +V+ L P PG LD T G GG+S K+G + +I +DRDP A++ E Sbjct: 6 HLSVLAREVMEQLAPRPGGTYLDGTLGGGGHSELILEKIGPDGLLIGIDRDPAALAAASE 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +R + F Q +F L + + +G++ G++ DLGVSS Q+D +RGFSF+ GPL Sbjct: 66 RLRRFGSCFRPLQGSFGDLAELLKQEGINTLDGLLLDLGVSSHQLDTDERGFSFRLDGPL 125 Query: 134 DMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 DMRM SC G SA+D++ + +L +I+ GEE+ A +IA IV+ RQ P TT L Sbjct: 126 DMRMDRSC-GDSAADLLQDCSAGELEQIIKEFGEERWAKKIALRIVQTRQETPITTTLQL 184 Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 + L+ T+ RIHPATR+FQALRI VN E+E++ QG+R+ ALKAGG + V+SF Sbjct: 185 ADLVAGTIPRRFHEERIHPATRTFQALRIAVNQELEQVEQGIRAGIAALKAGGRIAVISF 244 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 HSLEDR+VK F + M N P + + +T + V+ E+ N R+RS Sbjct: 245 HSLEDRIVKHLFREAATGCTCPPRMPYCVCNKKPQL-RILTGRPVIAGPEETDRNPRARS 303 Query: 309 AKLRA 313 AKLRA Sbjct: 304 AKLRA 308 >gi|260775374|ref|ZP_05884271.1| S-adenosyl-methyltransferase MraW [Vibrio coralliilyticus ATCC BAA-450] gi|260608555|gb|EEX34720.1| S-adenosyl-methyltransferase MraW [Vibrio coralliilyticus ATCC BAA-450] Length = 316 Score = 202 bits (515), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 128/309 (41%), Positives = 177/309 (57%), Gaps = 20/309 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H+ VLL + I L P +D TFG GG+SR ++G + ++DRDP A++ Q Sbjct: 7 HISVLLHESIDGLAIKPDGTYIDGTFGRGGHSRQILSQLGEQGRLFSIDRDPQAIAEAQ- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 T+ D + F++ FS + Y ++G VDGV+ DLGVSS Q+D +RGFSF K GP Sbjct: 66 TIDDPR--FTIIHGPFSGMAKYAEERGLVGQVDGVLLDLGVSSPQLDDAERGFSFMKDGP 123 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---PFQTT 188 LDMRM SGI S + +A++ D+T ++ GE+K A RIA AIV R++ P T Sbjct: 124 LDMRMDPTSGIPVSQWLMEADLDDITWVIREFGEDKHARRIAKAIVAYRENEENEPLTRT 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ LI S + HPATRSFQA RI++N+E+EE+ L+ A L G L V+ Sbjct: 184 GQLAKLISDAAPKSFKEKKHPATRSFQAFRIYINSELEEIDTALKGAASILAPEGRLSVI 243 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSIT----KKVVVPTQEDVAFN 303 SFHSLEDR+VK+F S K V H IP + A S K + P++++V N Sbjct: 244 SFHSLEDRMVKRFIRKES-KGPEVPHGIPMTEAQIKALGSANLKPIGKAIKPSKQEVDIN 302 Query: 304 RRSRSAKLR 312 RSRS+ LR Sbjct: 303 TRSRSSVLR 311 >gi|158320404|ref|YP_001512911.1| S-adenosyl-methyltransferase MraW [Alkaliphilus oremlandii OhILAs] gi|263446681|sp|A8MH28|RSMH_ALKOO RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|158140603|gb|ABW18915.1| S-adenosyl-methyltransferase MraW [Alkaliphilus oremlandii OhILAs] Length = 311 Score = 202 bits (514), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 125/310 (40%), Positives = 175/310 (56%), Gaps = 17/310 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 HV VLLE+ I LN + +D T G G+S K S+ +I +D+D A+ E Sbjct: 5 HVSVLLEECIENLNIKENGIYVDGTLGGAGHSSEIAKRLSDKGLLIGIDQDENAIKAAGE 64 Query: 77 TMRDYKEQFSLFQATFSQ----LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + KE+ L + FS LQ+ D G+DG++ DLGVSS Q+D DRGFS+ P Sbjct: 65 KLTPMKERIKLVRDNFSNIDAILQNLEID-GIDGILLDLGVSSHQLDEADRGFSYMHDAP 123 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM +SA +VVN KDL I+ GEEK A RIA+ IV R+ P TT L Sbjct: 124 LDMRMDTRQAVSAMEVVNSYTEKDLENIIKNYGEEKWAKRIANFIVDFRKEEPITTTHQL 183 Query: 192 SSLIQKTVYFSKNNRI---HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +I++ + K RI HPA R+FQA+RI VN E+E + + + A + L GG + ++ Sbjct: 184 VDVIKRAI--PKGARIDGPHPAKRTFQAIRIEVNGELEIINKTIDDAVRNLNPGGRICII 241 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 +FHSLEDR+VK F S + + + PAV + IT+K +VPT+E++ N R+ Sbjct: 242 TFHSLEDRIVKNAFRDLSNPCICPPEFPICRCDRKPAV-KIITRKPIVPTEEELELNPRA 300 Query: 307 RSAKLRAGMR 316 RSAKLR + Sbjct: 301 RSAKLRVAEK 310 >gi|21241542|ref|NP_641124.1| S-adenosyl-methyltransferase MraW [Xanthomonas axonopodis pv. citri str. 306] gi|24212036|sp|Q8PPB5|RSMH_XANAC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|21106893|gb|AAM35660.1| cell division protein [Xanthomonas axonopodis pv. citri str. 306] Length = 342 Score = 202 bits (514), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 125/324 (38%), Positives = 181/324 (55%), Gaps = 11/324 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HVPVL +V+ L LD TFG GG++R + G ++ +D+DP A++ + Sbjct: 8 HVPVLYTQVLDGLQVTENGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDPEAIAVAEH 67 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + + S+ + +F+ L V VDG++ DLGVSS Q+D RGFSF K GPLDMR Sbjct: 68 SF-GGDARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLDVAGRGFSFGKDGPLDMR 126 Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M SG SA++ + QA+ +++ +L GEE+Q+ RIA AIV RR P T L+ LI Sbjct: 127 MDPDSGQSAAEWLAQASDREIADVLWTYGEERQSRRIARAIVARRAEQPLLRTAQLADLI 186 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 +V +++ HPATRSFQA+RI +N E+ +L GL +A ALK GG L V+SFHSLED Sbjct: 187 -ASVMPRGDSKTHPATRSFQAIRIHINRELADLEAGLDAALGALKPGGRLAVISFHSLED 245 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA-- 313 R+VK+F A + + R + + A Q ++ + E + N R+RSA LR Sbjct: 246 RIVKQFMARYAKAPPSNRRLPEAQPFVATLQLVSGAIKADDAE-LHVNPRARSAVLRVAE 304 Query: 314 --GMRTVERSIEDDSFVHLPRLPT 335 G+ E + + R PT Sbjct: 305 KLGLGNGESGMGKGNSAAASRFPT 328 >gi|294664073|ref|ZP_06729474.1| S-adenosyl-methyltransferase MraW [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292606158|gb|EFF49408.1| S-adenosyl-methyltransferase MraW [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 347 Score = 202 bits (514), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 120/297 (40%), Positives = 173/297 (58%), Gaps = 7/297 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HVPVL +V+ L LD TFG GG++R + G ++ +D+DP A++ + Sbjct: 18 HVPVLYTQVLDGLQVTENGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDPDAIAVAEH 77 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + + S+ + +F+ L V VDG++ DLGVSS Q+D RGFSF K GPLDMR Sbjct: 78 SF-GGDARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLDVAGRGFSFGKDGPLDMR 136 Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M SG SA++ + QA+ +++ +L GEE+Q+ RIA AIV RR P T L+ LI Sbjct: 137 MDPDSGQSAAEWLAQASDREIADVLWTYGEERQSRRIARAIVARRAEQPLLRTAQLADLI 196 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 +V +++ HPATRSFQA+RI +N E+ +L GL +A ALK GG L V+SFHSLED Sbjct: 197 -ASVMPRGDSKTHPATRSFQAIRIHINRELADLEAGLDAALGALKPGGRLAVISFHSLED 255 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 R+VK+F A + + R + + A Q ++ + E + N R+RSA LR Sbjct: 256 RIVKQFMARYAKAPPSNRRLPEAQPFVATLQLVSGAIKADDAE-LHVNPRARSAVLR 311 >gi|254281944|ref|ZP_04956912.1| S-adenosyl-methyltransferase MraW [gamma proteobacterium NOR51-B] gi|219678147|gb|EED34496.1| S-adenosyl-methyltransferase MraW [gamma proteobacterium NOR51-B] Length = 306 Score = 202 bits (514), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 124/303 (40%), Positives = 177/303 (58%), Gaps = 9/303 (2%) Query: 20 HVPVLLEK-VIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 H VLLE+ V AL+ A G + D T+G GG+SR S +I D+DP A + Sbjct: 5 HRSVLLEEAVTALITTADGTYV-DGTYGRGGHSRRVLAALSEAGRLIGFDKDPEA-AVHA 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYV-PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 E + +FS F +F+ + D P++G GV+ DLGVSS Q+D G+RGFSFQ GPLD Sbjct: 63 EDLAATDSRFSFFHRSFADIPDIKRPEQGFSGVLLDLGVSSPQLDNGERGFSFQSDGPLD 122 Query: 135 MRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM S SG++A+ +N+A + +L ++ GEE+ A+RIA+AI+ R+ P + T L+ Sbjct: 123 MRMDSSSGVTAAVWINKAPLAELIQVFRDYGEERFATRIANAIIDAREETPIERTGRLAQ 182 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 ++ K + HPATR FQA+RIF+N E+E+L L L GG L+V+SFHSL Sbjct: 183 IV-KVAHPRWEPHKHPATRVFQAIRIFINRELEDLESVLVRVIDTLDVGGRLVVISFHSL 241 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 EDR+VK+F S V R + +A + K V P+ E++A N R+RSA +R Sbjct: 242 EDRIVKRFMRDESRGVSVPRGVPIRDADMGRRLRVVGKAVKPSTEELANNPRARSAVMRV 301 Query: 314 GMR 316 R Sbjct: 302 AER 304 >gi|190149279|ref|YP_001967804.1| S-adenosyl-methyltransferase MraW [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307262590|ref|ZP_07544221.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|263446582|sp|B3GZK0|RSMH_ACTP7 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|189914410|gb|ACE60662.1| S-adenosyl-methyltransferase MraW [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306872088|gb|EFN03801.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 313 Score = 202 bits (514), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 125/313 (39%), Positives = 182/313 (58%), Gaps = 18/313 (5%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPF 69 ++ T+ H+ VLL + + L P + +D TFG GG+SR S +IA DRDP Sbjct: 1 MNDTVHKHITVLLHEAVDGLAIKPSGIYIDGTFGRGGHSRLILSKLSEQGRLIATDRDPR 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGF 125 A++ T+ D + F + FS + D G +DG++ DLGVSS Q+D +RGF Sbjct: 61 AIAEAN-TIDDTR--FQIVHTAFSAIPDVCEQLGLTGKIDGILLDLGVSSPQLDDAERGF 117 Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF + GPLDMRM + G+SA++ + Q + DL +L GEE+ A RIA A+V +SA Sbjct: 118 SFMRDGPLDMRMDTTKGLSAAEWLAQVSADDLAWVLKTFGEERFAKRIAQAVVSYNKSAT 177 Query: 185 --FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 T L+ +I V F K+ HPATRSFQA+RIF+N+E++EL + L+SA L Sbjct: 178 DKISRTLQLAQIIADAVPF-KDKHKHPATRSFQAIRIFINSELDELEKALQSALSVLAPE 236 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP---SNAHPAVFQSITKKVVVPTQED 299 G L ++SFHSLEDR+VK+F ++ K M V +P S + + I K ++P++ + Sbjct: 237 GRLSIISFHSLEDRMVKQFM-KKNSKGMDVPKGLPILESELNKNIPLKIIGKAIMPSEAE 295 Query: 300 VAFNRRSRSAKLR 312 + N RSRSA LR Sbjct: 296 IEANPRSRSAVLR 308 >gi|152988306|ref|YP_001350328.1| S-adenosyl-methyltransferase MraW [Pseudomonas aeruginosa PA7] gi|262825003|sp|A6VB93|RSMH_PSEA7 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|150963464|gb|ABR85489.1| S-adenosyl-methyltransferase MraW [Pseudomonas aeruginosa PA7] Length = 313 Score = 202 bits (514), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 123/305 (40%), Positives = 184/305 (60%), Gaps = 16/305 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQE 76 H+ VLLE+ ++ L P LD TFG GG+SR+ + G ++ D+DP A+ G+ Sbjct: 7 HITVLLEEAVSALAPREDGCYLDGTFGRGGHSRALLEKLGTGGRLLGFDKDPQAIQTGK- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F + Q +F++L D V +G VDGV+ DLGVSS Q+D +RGFSF GP Sbjct: 66 ALAAEDGRFVIVQRSFAELGDEVRARGLEGRVDGVLLDLGVSSPQLDDPERGFSFLNDGP 125 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ GISA++ + A +++ R+ GEE+ A R+A AIV+RRQ PF+ T DL Sbjct: 126 LDMRMNPGQGISAAEFIASAAEEEIARVFKEYGEERFAKRMARAIVQRRQERPFERTADL 185 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +I + + +PATR+FQ LRI VNNE+ +L +GL +A ++L GG L+V+SFH Sbjct: 186 AEVITVANPAWEKGK-NPATRAFQGLRIHVNNELGDLERGLDAALESLAVGGRLVVISFH 244 Query: 252 SLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVP---TQEDVAFNRRSR 307 SLEDR+VK F + G+ + +P + VF+ K + P ++ ++ N RSR Sbjct: 245 SLEDRIVKLFMRKHAKGEADNLPRDLPIRSK--VFEPRLKLLGKPQYASEAELKANPRSR 302 Query: 308 SAKLR 312 SA +R Sbjct: 303 SAVMR 307 >gi|303250489|ref|ZP_07336686.1| S-adenosyl-methyltransferase MraW [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303251832|ref|ZP_07338003.1| S-adenosyl-methyltransferase MraW [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307249133|ref|ZP_07531140.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307249209|ref|ZP_07531206.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307251531|ref|ZP_07533438.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307260461|ref|ZP_07542156.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|302649262|gb|EFL79447.1| S-adenosyl-methyltransferase MraW [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302650477|gb|EFL80636.1| S-adenosyl-methyltransferase MraW [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306854421|gb|EFM86617.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306858733|gb|EFM90792.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306860995|gb|EFM93001.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306869864|gb|EFN01646.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 313 Score = 202 bits (514), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 125/313 (39%), Positives = 182/313 (58%), Gaps = 18/313 (5%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPF 69 ++ T+ H+ VLL + + L P + +D TFG GG+SR S +IA DRDP Sbjct: 1 MNDTVHKHITVLLHEAVDGLAIKPNGIYIDGTFGRGGHSRLILSKLSEQGRLIATDRDPR 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGF 125 A++ T+ D + F + FS + D G +DG++ DLGVSS Q+D +RGF Sbjct: 61 AIAEAN-TIDDTR--FQIVHTAFSAIPDVCEQLGLTGKIDGILLDLGVSSPQLDDAERGF 117 Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF + GPLDMRM + G+SA++ + Q + DL +L GEE+ A RIA A+V +SA Sbjct: 118 SFMRDGPLDMRMDTTKGLSAAEWLAQVSADDLAWVLKTFGEERFAKRIAQAVVSYNKSAT 177 Query: 185 --FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 T L+ +I V F K+ HPATRSFQA+RIF+N+E++EL + L+SA L Sbjct: 178 DKISRTLQLAQIIADAVPF-KDKHKHPATRSFQAIRIFINSELDELEKALQSALSVLAPE 236 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP---SNAHPAVFQSITKKVVVPTQED 299 G L ++SFHSLEDR+VK+F ++ K M V +P S + + I K ++P++ + Sbjct: 237 GRLSIISFHSLEDRMVKQFM-KKNSKGMDVPKGLPILESELNKNIPLKIIGKAIMPSEAE 295 Query: 300 VAFNRRSRSAKLR 312 + N RSRSA LR Sbjct: 296 IEANPRSRSAVLR 308 >gi|325923945|ref|ZP_08185535.1| S-adenosyl-methyltransferase MraW [Xanthomonas gardneri ATCC 19865] gi|325545571|gb|EGD16835.1| S-adenosyl-methyltransferase MraW [Xanthomonas gardneri ATCC 19865] Length = 352 Score = 202 bits (514), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 124/299 (41%), Positives = 175/299 (58%), Gaps = 11/299 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HVPVL +V+ L LD TFG GG++R + G ++ +D+DP A++ ++ Sbjct: 18 HVPVLYTQVLDGLQVIENGTYLDGTFGRGGHARGVLQHLGPGGRLLVMDKDPEAIAVAEQ 77 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + S+ + +F+ L V VDG++ DLGVSS Q+D RGFSF K GPLDMR Sbjct: 78 AF-GGDARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLDVAGRGFSFGKDGPLDMR 136 Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M G SA++ + A+ +++ +L GEE+Q+ RIA AIV RR P T L+ LI Sbjct: 137 MDPDVGQSAAEWLAHASDREIADVLWTYGEERQSRRIARAIVARRTEQPLLRTAQLAELI 196 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 +V +++ HPATRSFQA+RI++N E+++L GL +A ALK GG L V+SFHSLED Sbjct: 197 -ASVMPRGDSKTHPATRSFQAIRIYINRELDDLEAGLDAALGALKPGGRLAVISFHSLED 255 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRSAKLR 312 R+VK+F A R K +P A P V Q +T V E ++ N R+RSA LR Sbjct: 256 RIVKQFMA-RYAKAPPSNRRLP-EAQPFVPTLQLVTGAVKADFDE-LSVNPRARSAVLR 311 >gi|281212537|gb|EFA86697.1| hypothetical protein PPL_00499 [Polysphondylium pallidum PN500] Length = 919 Score = 202 bits (514), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 117/315 (37%), Positives = 176/315 (55%), Gaps = 28/315 (8%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H PVL +VI L PG +D TFG GG++ + VIA DRDP + Sbjct: 606 HKPVLFREVIDRLRLKPGSCYIDCTFGLGGHTTGILDRQPDCYVIAFDRDPHVFELTKHL 665 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKG-----VDGVVFDLGVSSMQIDCGDRGFSFQKS-- 130 + YK++ FS++ + + G +DG++FD GVSS+Q+D +RGFSF+K Sbjct: 666 RQKYKDRLITIHGEFSRMSSLLAENGLSDLPIDGILFDFGVSSLQLDDPERGFSFRKDLY 725 Query: 131 GPLDMRMS---CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 GPLDMRM+ S +SA D+VN ++K L I+ GEE+ +IA IV RR P +T Sbjct: 726 GPLDMRMNKDDSSTLSAFDIVNTFSIKRLRDIMYFYGEERHTKKIAEEIVLRRSIEPIRT 785 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T +L ++I+K + + N+ +R F+ALR++VN+E +E+ +GL AEK L+ G L+ Sbjct: 786 TNELVAIIEKCIPYPAANK--SISRIFRALRMYVNSETQEVKKGLLEAEKVLQPNGELVA 843 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +SFHS+EDR+VKKFF SR + + P P V +++ +N RS+ Sbjct: 844 ISFHSIEDRIVKKFFQSRKNQSF----VFPDGDDP----------VYAAPDELEWNPRSK 889 Query: 308 SAKLRAGMRTVERSI 322 A LR+ RT + + Sbjct: 890 PAILRSAQRTKSKPL 904 >gi|294627718|ref|ZP_06706300.1| S-adenosyl-methyltransferase MraW [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292598070|gb|EFF42225.1| S-adenosyl-methyltransferase MraW [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 347 Score = 202 bits (514), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 120/297 (40%), Positives = 173/297 (58%), Gaps = 7/297 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HVPVL +V+ L LD TFG GG++R + G ++ +D+DP A++ + Sbjct: 18 HVPVLYTQVLDGLQVTENGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDPDAIAVAEH 77 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + + S+ + +F+ L V VDG++ DLGVSS Q+D RGFSF K GPLDMR Sbjct: 78 SF-GGDARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLDVAGRGFSFGKDGPLDMR 136 Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M SG SA++ + QA+ +++ +L GEE+Q+ RIA AIV RR P T L+ LI Sbjct: 137 MDPDSGQSAAEWLAQASDREIADVLWTYGEERQSRRIARAIVARRAEQPLLRTAQLADLI 196 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 +V +++ HPATRSFQA+RI +N E+ +L GL +A ALK GG L V+SFHSLED Sbjct: 197 -ASVMPRGDSKTHPATRSFQAIRIHINRELADLEAGLDAALGALKPGGRLAVISFHSLED 255 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 R+VK+F A + + R + + A Q ++ + E + N R+RSA LR Sbjct: 256 RIVKQFMARYAKAPPSNRRLPEAQPFVATLQLVSGAIKADDAE-LHVNPRARSAVLR 311 >gi|315924810|ref|ZP_07921027.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Pseudoramibacter alactolyticus ATCC 23263] gi|315621709|gb|EFV01673.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Pseudoramibacter alactolyticus ATCC 23263] Length = 314 Score = 202 bits (514), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 124/309 (40%), Positives = 179/309 (57%), Gaps = 12/309 (3%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MG--SNVIALDRDPFAVSCG 74 G H+ VL ++ IA L G + +D T G GG+S + C+ +G +I +D+D +A+S Sbjct: 7 GKHITVLRDEAIAGLGIVRGGIYVDCTLGGGGHSEAICRALGHQGTLIGIDQDQYALSRA 66 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +R + + F L+ + + G+ DG +FDLGVSS Q D +RGFS+ G Sbjct: 67 ETRLRSQRCHKIFVRNNFVDLETVLDNAGIEKADGFLFDLGVSSFQFDQAERGFSYHHDG 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S ++A VVN + +DL RIL GEEK + R+A AIVK R AP T Sbjct: 127 PLDMRMDRSRPLTAERVVNTYSQEDLKRILWGYGEEKMSGRVAAAIVKARAQAPITRTGQ 186 Query: 191 LSSLIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I K Y K R HPA ++FQALRI VN E+ L L++A L GG + V++ Sbjct: 187 LAEII-KAAYPEKLKRKGHPAKKTFQALRIEVNGELRILNDALKAAIDRLNPGGRICVIT 245 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSR 307 FHSLED+LVK+ F ++ + + P V + IT+K +VP++ ++A NRR+R Sbjct: 246 FHSLEDQLVKRLFTEQADPCICPPEL-PQCVCGRVPTIKKITRKPIVPSETELAANRRAR 304 Query: 308 SAKLRAGMR 316 SAKLR R Sbjct: 305 SAKLRIAER 313 >gi|194290821|ref|YP_002006728.1| s-adenosyl-methyltransferase mraw [Cupriavidus taiwanensis LMG 19424] gi|263446166|sp|B3R6W7|RSMH_CUPTR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|193224656|emb|CAQ70667.1| S-adenosyl-dependent methyl transferase [Cupriavidus taiwanensis LMG 19424] Length = 329 Score = 202 bits (513), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 127/315 (40%), Positives = 192/315 (60%), Gaps = 35/315 (11%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + L P V +D TFG GG+SR+ ++G + ++A D+DP A++ Sbjct: 14 HRTVLLDEAVDALVWRPDGVYVDGTFGRGGHSRAVLARLGPDGALVAFDKDPAAIAEAG- 72 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 T++D + FS+ A+F+ + + + +G V GV+ DLG+SS QID RGFSF+ GPLDM Sbjct: 73 TIKDAR--FSIEHASFAAMAERLAGRGHVAGVLLDLGISSPQIDEAARGFSFRFEGPLDM 130 Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTTQD 190 RM + GI+A+ + QA+ +D+ R++ GEE+ A +IA AIV RR + P TT D Sbjct: 131 RMDTTRGITAAQWLAQADEQDIARVIRDYGEERFAVQIAKAIVARRSESGDGGPVATTAD 190 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L++L+ K V + + PATR+FQALRI VN E+E+L +GL++A L+ GG L+V+SF Sbjct: 191 LAALVAKAVKTREKGQ-DPATRTFQALRIHVNQELEDLERGLKAAYDLLQVGGRLVVISF 249 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSITKKVVVPT------------Q 297 HSLEDR+VK+F A+ H P +A PA+ ++ + +P Sbjct: 250 HSLEDRIVKRFMAA---------HARPQQDADPALRRAPLRAADLPQPTLRLLGRYKPGA 300 Query: 298 EDVAFNRRSRSAKLR 312 E+VA N R+RSA +R Sbjct: 301 EEVAANPRARSAVMR 315 >gi|310828121|ref|YP_003960478.1| hypothetical protein ELI_2533 [Eubacterium limosum KIST612] gi|308739855|gb|ADO37515.1| hypothetical protein ELI_2533 [Eubacterium limosum KIST612] Length = 311 Score = 202 bits (513), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 121/304 (39%), Positives = 174/304 (57%), Gaps = 13/304 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H VLL + + L P +D T G GG+S CK S +I +D+D FA+ Sbjct: 5 HTTVLLHETVDGLMIRPDGTYVDGTLGGGGHSELICKRLSADGTLIGIDQDDFALDYAGR 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + Y + L + F L++ + + GV DG+++DLGVSS Q D RGFS+ GPL Sbjct: 65 RLAPYACRKQLVKNNFVHLKEVLGEAGVSQIDGIIYDLGVSSFQFDDETRGFSYHHDGPL 124 Query: 134 DMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S + +SA +VVN + L ++L + GEE+ A RI +AI+K R++ P +TT +LS Sbjct: 125 DMRMDSGAELSAYEVVNAYPPERLKKVLQVYGEERFAGRIVNAIIKERETKPIETTLELS 184 Query: 193 SLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 LI K Y +K HPA +SFQA+R+ VN+E++ L + +ALK GG + +++F Sbjct: 185 ELI-KAAYPAKERFKEKHPARKSFQAIRLEVNHELDILEDAFSAGIEALKPGGRMCIITF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 HSLEDR+VK FF + P V + IT+K V+P E++ NRRSRS Sbjct: 244 HSLEDRIVKHFFKDKQNPCTCPPEFPACVCGKKPEV-RIITRKPVLPAPEEIEANRRSRS 302 Query: 309 AKLR 312 AKLR Sbjct: 303 AKLR 306 >gi|159038986|ref|YP_001538239.1| S-adenosyl-methyltransferase MraW [Salinispora arenicola CNS-205] gi|262826354|sp|A8LX88|RSMH_SALAI RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|157917821|gb|ABV99248.1| S-adenosyl-methyltransferase MraW [Salinispora arenicola CNS-205] Length = 372 Score = 202 bits (513), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 120/310 (38%), Positives = 179/310 (57%), Gaps = 11/310 (3%) Query: 18 GDHVPVLLEKVIALLNPAPGK----VILDATFGAGGYSRSFCKMGSN--VIALDRDPFAV 71 G HVPVLLE+ + LL PA G+ V +DAT G GG++ + ++ LDRD A+ Sbjct: 10 GAHVPVLLERCLELLAPALGRAGRTVYVDATLGLGGHAEAVLATHPQTMLVGLDRDTEAL 69 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQ 128 + + + + ++ L A + +L D + G VDG++FDLGVSS+Q+D DRGF++ Sbjct: 70 AHARVRLARFADRVHLEHAVYDELPDVLDRLGHPVVDGILFDLGVSSLQLDAPDRGFAYA 129 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + PLDMRM + G++A +VVN DL R+L + GEEK A RIA AIV+ R+ P + Sbjct: 130 QDAPLDMRMDQTRGLTAEEVVNTYPHPDLARVLRVYGEEKFAPRIASAIVRERERDPITS 189 Query: 188 TQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 + L+ L+++T+ ++ HPA R+FQALRI VN E+ L L +A L G L+ Sbjct: 190 SARLAELVRQTIPAPARRTGGHPAKRTFQALRIEVNRELAALETALPAALDRLTIEGRLV 249 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+S+HSLEDRL K A R V + F+ +++ +P + +VA N R+ Sbjct: 250 VLSYHSLEDRLTKVALADRVRSKGPVDLPVELPGTGPTFRLLSRGAELPGEAEVAMNPRA 309 Query: 307 RSAKLRAGMR 316 S +LRA R Sbjct: 310 ASVRLRAAER 319 >gi|149927124|ref|ZP_01915381.1| S-adenosyl-methyltransferase [Limnobacter sp. MED105] gi|149824063|gb|EDM83284.1| S-adenosyl-methyltransferase [Limnobacter sp. MED105] Length = 323 Score = 202 bits (513), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 125/311 (40%), Positives = 185/311 (59%), Gaps = 16/311 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 +H+PVLL+ + L P + LD TFG GG+SR+ + S ++ALDRDP AV Sbjct: 5 EHIPVLLQPTVDALLHTPDGLYLDCTFGRGGHSRALLEKLSAQGQLVALDRDPQAVQAMG 64 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E ++D + F ++ F+ L+ + G VDGV+ D+GVSS QID +RGFSF++ GP Sbjct: 65 E-IKDSR--FRGVRSAFADLESALDSLGIDQVDGVLMDIGVSSPQIDQAERGFSFRRDGP 121 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM +G SA+D + +A+ +++ ++ GEE+ A +IA AIV RR P TT DL Sbjct: 122 LDMRMDPQTGESAADFLARADAREIKEVIKNYGEERFAVQIATAIVARRTERPITTTLDL 181 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ V + + PATR+FQALRI VN E+ +L QGL +A K L+ GG L V+SFH Sbjct: 182 AQIVAGAVRTREPGQ-DPATRTFQALRIHVNQELAQLEQGLTAAFKRLRVGGRLAVISFH 240 Query: 252 SLEDRLVKKF---FASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SLEDR+ K+F A+ + A +P + + + + + PT+E+ N RSRS Sbjct: 241 SLEDRITKQFIEKLANPKSQQDARLRKLPLPEPTPLMKKLDR--IKPTKEECELNPRSRS 298 Query: 309 AKLRAGMRTVE 319 + LR + E Sbjct: 299 SVLRVAEKLAE 309 >gi|307132591|ref|YP_003884607.1| 16S rRNA m(4)C1402 methyltransferase [Dickeya dadantii 3937] gi|306530120|gb|ADN00051.1| 16S rRNA m(4)C1402 methyltransferase [Dickeya dadantii 3937] Length = 313 Score = 202 bits (513), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 126/309 (40%), Positives = 187/309 (60%), Gaps = 17/309 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + LN + +D TFG GG+SR ++G ++A+DRDP AV+ Sbjct: 7 HTTVLLDEAVNGLNIRSNGIYIDGTFGRGGHSRLILSRLGPEGRLLAIDRDPQAVAVAN- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 T+ D + FS+ FS+L +YV ++G +DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 66 TIDDAR--FSIIHGPFSELAEYVDERGLTGKIDGILLDLGVSSPQLDDPERGFSFMRDGP 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G SA++ + +A +D+ +L GEE+ A RIA AIV+R + P T+ L Sbjct: 124 LDMRMDPTRGQSAAEWLMKAEAEDIAWVLKTFGEERFAKRIARAIVERNRVEPLTRTKAL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI + ++ HPATRSFQA+RI++N+E+EE+ + L A + L G L V+SFH Sbjct: 184 AELIAAASPIREKHK-HPATRSFQAIRIYINSELEEIERALDGALQVLAPEGRLSVISFH 242 Query: 252 SLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKV--VVPTQEDVAFNRRSR 307 SLEDR+VK+F SR +V A + Q++ K V ++P E+VA N R+R Sbjct: 243 SLEDRIVKRFIRQHSRGPQVPAGLPLTEEQLRSRGGQTL-KAVGKMMPPDEEVADNPRAR 301 Query: 308 SAKLRAGMR 316 S+ LR R Sbjct: 302 SSVLRFAER 310 >gi|254509146|ref|ZP_05121246.1| S-adenosyl-methyltransferase MraW [Vibrio parahaemolyticus 16] gi|219547943|gb|EED24968.1| S-adenosyl-methyltransferase MraW [Vibrio parahaemolyticus 16] Length = 316 Score = 202 bits (513), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 125/309 (40%), Positives = 176/309 (56%), Gaps = 20/309 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H+ VLL + I L P + +D TFG GG+SR+ ++G N + ++DRDP A++ E Sbjct: 7 HISVLLHESIDGLAIKPDGIYIDGTFGRGGHSRTILSQLGDNGRLYSIDRDPQAIA---E 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F++ FS + +Y + G VDGV+ DLGVSS Q+D +RGFSF K GP Sbjct: 64 AAKIDDPRFTIIHGPFSGMAEYAAEYGLVGKVDGVLLDLGVSSPQLDDAERGFSFMKDGP 123 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---PFQTT 188 LDMRM SGI S + +A++ D+T ++ GE+K A RIA AIV R++ P T Sbjct: 124 LDMRMDPTSGIPVSQWLMEADLDDITWVIREFGEDKHARRIAKAIVAYRENEENEPLTRT 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ LI S + HPATR+FQA RI++N+E+EE+ L+ A L G L V+ Sbjct: 184 GQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAASILAPEGRLSVI 243 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSN-----AHPAVFQSITKKVVVPTQEDVAFN 303 SFHSLEDR+VK+F S K V H IP A + K + P++ +V N Sbjct: 244 SFHSLEDRMVKRFIRKES-KGPEVPHGIPMTEEQIKALGSANMKPIGKAIKPSKNEVEVN 302 Query: 304 RRSRSAKLR 312 RSRS+ LR Sbjct: 303 ARSRSSVLR 311 >gi|227113994|ref|ZP_03827650.1| S-adenosyl-methyltransferase MraW [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 314 Score = 202 bits (513), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 123/309 (39%), Positives = 185/309 (59%), Gaps = 16/309 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + LN G + +D TFG GG+SR ++G ++A+DRDP A+ + Sbjct: 7 HTTVLLDEAVNGLNIRSGGIYIDGTFGRGGHSRLILSQLGPEGRLLAIDRDPQAIEAAK- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + D + FS+ FS + +YV + G +DGV+ DLGVSS Q+D +RGFSF + GP Sbjct: 66 AIDDPR--FSIIHGPFSAMAEYVAELGLTGQIDGVLLDLGVSSPQLDDPERGFSFMRDGP 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G+SA++ + +A D+ +L GEE+ A RIA AIV+R + P T++L Sbjct: 124 LDMRMDPTRGLSAAEWLMKAEADDIVWVLKTFGEERFAKRIARAIVERNRLDPMTRTKEL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI + ++ HPATRSFQA+RI++N+E+EE+ + L A L G L V+SFH Sbjct: 184 AELIAAASPIREKHK-HPATRSFQAIRIYINSELEEIERALEGALSVLAPQGRLSVISFH 242 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSI--TKKVVVPTQEDVAFNRRSR 307 SLEDR+VK+F SR +V A + Q++ K ++P++ +VA N R+R Sbjct: 243 SLEDRIVKRFIRHQSRGPQVPAGLPLTEEQLRSQGGQTLKAVGKKLMPSEAEVAENPRAR 302 Query: 308 SAKLRAGMR 316 S+ LR R Sbjct: 303 SSVLRFAER 311 >gi|27364047|ref|NP_759575.1| 16S rRNA m(4)C1402 methyltranserfase [Vibrio vulnificus CMCP6] gi|37678790|ref|NP_933399.1| S-adenosyl-methyltransferase MraW [Vibrio vulnificus YJ016] gi|320157431|ref|YP_004189810.1| rRNA small subunit methyltransferase H [Vibrio vulnificus MO6-24/O] gi|30173038|sp|Q8DEK2|RSMH_VIBVU RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|42559438|sp|Q7MNV9|RSMH_VIBVY RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|27360164|gb|AAO09102.1| S-adenosyl-methyltransferase MraW [Vibrio vulnificus CMCP6] gi|37197531|dbj|BAC93370.1| predicted S-adenosylmethionine-dependent methyltransferase [Vibrio vulnificus YJ016] gi|319932743|gb|ADV87607.1| rRNA small subunit methyltransferase H [Vibrio vulnificus MO6-24/O] Length = 316 Score = 202 bits (513), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 126/309 (40%), Positives = 176/309 (56%), Gaps = 20/309 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H+ VLL + I L P + +D TFG GG+SR+ K+G + + ++DRDP A++ E Sbjct: 7 HISVLLHESIDGLAIKPDGIYIDGTFGRGGHSRTILSKLGEHGRLYSIDRDPQAIA---E 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F++ FS + +Y VDGV+ DLGVSS Q+D +RGFSF K GP Sbjct: 64 AGKIDDPRFTIIHGPFSGMANYAEQYDLVGKVDGVLLDLGVSSPQLDDAERGFSFMKDGP 123 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---PFQTT 188 LDMRM SGI S + +A++ D+T ++ GE+K A RIA AIV R+ P T Sbjct: 124 LDMRMDPTSGIPVSQWLMEADLDDITWVIREFGEDKHARRIAKAIVAHREDETKEPLTRT 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ LI + S + HPATR+FQA RI++N+E+EE+ L+ A L G L V+ Sbjct: 184 SQLAKLISEAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAASILAPEGRLSVI 243 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSITKKVV----VPTQEDVAFN 303 SFHSLEDR+VK+F S K V H IP + A S K V +PT +++ N Sbjct: 244 SFHSLEDRMVKRFMRKES-KGPEVPHGIPLTEAQIKALGSANMKTVGKAIMPTAQEIELN 302 Query: 304 RRSRSAKLR 312 RSRS+ LR Sbjct: 303 PRSRSSVLR 311 >gi|114564962|ref|YP_752476.1| S-adenosyl-methyltransferase MraW [Shewanella frigidimarina NCIMB 400] gi|122298407|sp|Q07WH7|RSMH_SHEFN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|114336255|gb|ABI73637.1| S-adenosyl-methyltransferase MraW [Shewanella frigidimarina NCIMB 400] Length = 313 Score = 202 bits (513), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 118/308 (38%), Positives = 177/308 (57%), Gaps = 15/308 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H+ VLL + + LN + +D TFG GG+SR +G N +IA+DRDP A+ ++ Sbjct: 7 HLSVLLNETVDGLNIQSDGIYIDGTFGRGGHSRHVLSHLGENGRLIAIDRDPQAIEAAKQ 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 D + F + F QL +YV + G ++GV+ DLGVSS Q+D +RGFSF + GP Sbjct: 67 FADDPR--FQIVHGGFGQLAEYVEELGLTGKINGVLLDLGVSSPQLDDAERGFSFLRDGP 124 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G +A+ + +A ++D+ + GEEK + IA I R+ PF T+DL Sbjct: 125 LDMRMDNSQGQTAAQWIARAEIEDMAWVFKTYGEEKNSRHIARCIAADREKTPFLRTKDL 184 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI + + N+ HPATR FQA+RI++N+E+E++ Q L A L G L V+SFH Sbjct: 185 ADLIARITKNKERNK-HPATRVFQAIRIYINSELEQIDQALEGALAVLAPQGRLSVISFH 243 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP---SNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SLEDR+VK+F R + +V H +P + + + K + P+ ++ N R+RS Sbjct: 244 SLEDRMVKRFI-RRHSQGESVPHGLPIMEAELNKSRKLKAVSKALKPSDAELELNPRARS 302 Query: 309 AKLRAGMR 316 + LR R Sbjct: 303 SVLRVAER 310 >gi|188585922|ref|YP_001917467.1| S-adenosyl-methyltransferase MraW [Natranaerobius thermophilus JW/NM-WN-LF] gi|262825152|sp|B2A2G4|RSMH_NATTJ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|179350609|gb|ACB84879.1| S-adenosyl-methyltransferase MraW [Natranaerobius thermophilus JW/NM-WN-LF] Length = 315 Score = 202 bits (513), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 120/308 (38%), Positives = 178/308 (57%), Gaps = 11/308 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCG 74 +H PV++EK I LL P +VI+D T G G+S S G ++ +D+DP A G Sbjct: 4 NHEPVMIEKTIELLKPESAQVIVDGTMGGAGHSLRIINSLPPEGI-LVGIDQDPDAYEAG 62 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + Y + +F F ++ G VDG++ DLGVSS Q+D DRGF++Q++ Sbjct: 63 KSLLEAYGNKAKVFNDNFVNIKHICERIGIHYVDGILLDLGVSSYQLDNKDRGFTYQENA 122 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S I+AS+VVN + + L I+ GEEK A RIA IV+ RQ TTQ+ Sbjct: 123 PLDMRMDKSQKITASEVVNTYSEQKLAEIIREYGEEKWAQRIAQFIVQARQDQEINTTQE 182 Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I+ + ++ + HPA R+FQALRI VN E++ L ++ + L+ G +V++ Sbjct: 183 LVKVIKAAIPKGARKSGPHPAKRTFQALRIHVNGELDSLRTAIQEGIRLLRGKGRFVVIT 242 Query: 250 FHSLEDRLVKKFFASRSGK-VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK+ F + V + I A + +TKK ++P+Q ++ N R+RS Sbjct: 243 FHSLEDRIVKQEFKKLAQTCVCPTKLPICQCKGEATVKLLTKKPLLPSQGEIEINPRARS 302 Query: 309 AKLRAGMR 316 AKLRA R Sbjct: 303 AKLRAVER 310 >gi|297544901|ref|YP_003677203.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842676|gb|ADH61192.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 308 Score = 202 bits (513), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 117/304 (38%), Positives = 172/304 (56%), Gaps = 8/304 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77 H VLL++ I LN P + +D T G GG+S K +IA+DRD A+ +E Sbjct: 5 HKSVLLKETIEYLNIKPEGIYVDGTLGGGGHSEQILKRLTKGKLIAIDRDLDAIKASKER 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 +++YK F +++ + GVD G++ DLGVSS Q++ +RGFS+ K PLD Sbjct: 65 LKNYK-NVKYINNNFKNIKEILKSLGVDKVDGIILDLGVSSFQLEEVERGFSYMKDAPLD 123 Query: 135 MRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM S SA DVVN+ + ++L +++ GEEK ASRIA IVK R+ +TT L Sbjct: 124 MRMDKNSTFSAYDVVNKYSQQELEKVIREYGEEKWASRIAKFIVKEREKGEIKTTFQLVE 183 Query: 194 LIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ + S + HPA R+FQA+RI VN E++ L + + + L+ G + +++FHS Sbjct: 184 IIKNAIPASARRKGPHPAKRTFQAIRIEVNEELKGLGKAIEDMVEVLRGKGRIAIITFHS 243 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK F +M V + ITKK VVP++E++ N RSRSAKLR Sbjct: 244 LEDRIVKNTFKKLENPCTCPPNMPCICGKKPVVKIITKKPVVPSKEEIETNSRSRSAKLR 303 Query: 313 AGMR 316 + Sbjct: 304 VAEK 307 >gi|145297477|ref|YP_001140318.1| S-adenosyl-methyltransferase MraW [Aeromonas salmonicida subsp. salmonicida A449] gi|263446607|sp|A4SI48|RSMH_AERS4 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|142850249|gb|ABO88570.1| S-adenosyl-methyltransferase MraW [Aeromonas salmonicida subsp. salmonicida A449] Length = 312 Score = 201 bits (512), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 125/311 (40%), Positives = 180/311 (57%), Gaps = 14/311 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQ 75 +H+ VLL + + L P + +D TFG GG+SR + +G N +IA+DRDP A++ Sbjct: 6 EHITVLLHEAVEGLAIKPDGIYVDGTFGRGGHSRLILQHLGPNGRLIAIDRDPQAIA--- 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E + +F + FS + Y+ ++G VDG + DLGVSS Q+D +RGFSF K G Sbjct: 63 EAAKIQDPRFEIVHGPFSGIVSYLDERGLLGKVDGFLLDLGVSSPQLDDAERGFSFMKDG 122 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM SG SA+ + +A+V D+ +L GEE+ A +IA AIV R + P+ T+ Sbjct: 123 PLDMRMDPTSGQSAAQWLARADVDDIAWVLKTFGEERFAKKIARAIVHDRVTEPYVRTRQ 182 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ +I + V SK H ATRSFQA+RI++N+E++E+ L A +AL G L V+SF Sbjct: 183 LAEMIAR-VNPSKEKGKHAATRSFQAIRIYINSELDEIETALNGALQALAPEGRLSVISF 241 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK--KVVVPTQEDVAFNRRSRS 308 HSLEDRLVK F R + + A A + + K + P++ +V N RSRS Sbjct: 242 HSLEDRLVKHFIRKHEKGPEVPRGIPLTEAQLAGGRKLKSVGKALKPSEHEVTENSRSRS 301 Query: 309 AKLRAGMRTVE 319 + LR R E Sbjct: 302 SVLRVAQRLAE 312 >gi|16078578|ref|NP_389397.1| S-adenosyl-methyltransferase MraW [Bacillus subtilis subsp. subtilis str. 168] gi|221309385|ref|ZP_03591232.1| S-adenosyl-methyltransferase MraW [Bacillus subtilis subsp. subtilis str. 168] gi|221313712|ref|ZP_03595517.1| S-adenosyl-methyltransferase MraW [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318634|ref|ZP_03599928.1| S-adenosyl-methyltransferase MraW [Bacillus subtilis subsp. subtilis str. JH642] gi|221322908|ref|ZP_03604202.1| S-adenosyl-methyltransferase MraW [Bacillus subtilis subsp. subtilis str. SMY] gi|1730600|sp|Q07876|RSMH_BACSU RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|1122760|emb|CAA92525.1| unknown [Bacillus subtilis subsp. subtilis str. 168] gi|2633885|emb|CAB13387.1| S-adenosyl-dependent methyltransferase active on membrane-located substrates [Bacillus subtilis subsp. subtilis str. 168] Length = 311 Score = 201 bits (512), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 120/303 (39%), Positives = 176/303 (58%), Gaps = 11/303 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H VLL + + LN P +D T G G+S + S +IA D+D A+ +E Sbjct: 4 HKTVLLRETVDGLNIKPDGTYVDCTLGGAGHSTYLLQQLSEKGRLIAFDQDDTALQHAKE 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + DYK Q L ++ F L++Y+ ++GV DG++FDLGVSS Q+D +RGFS+ PL Sbjct: 64 VLSDYKGQLILIKSNFRYLKEYLNEQGVTEVDGILFDLGVSSPQLDTPERGFSYHHDAPL 123 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S +SA +VVN+ +DL RI GEEK + +IA I + R +P QTT L Sbjct: 124 DMRMDQSATLSAKEVVNEWRYEDLVRIFFKYGEEKFSKQIARKIEEARMKSPIQTTGQLV 183 Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 LI+ + ++ + HPA R FQA+RI VN+E+ + L A + LK GG + V++FH Sbjct: 184 DLIKDAIPAPARRSGGHPAKRVFQAIRIAVNDELRVFEEALEQAIEVLKPGGRVSVITFH 243 Query: 252 SLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+ K F +S ++ +IP P + + IT+K + +QE++ N R+RSA Sbjct: 244 SLEDRICKTTFKEKSSLPELPPGLPVIPEEFEPEL-KLITRKPITASQEELEENNRARSA 302 Query: 310 KLR 312 KLR Sbjct: 303 KLR 305 >gi|317493287|ref|ZP_07951709.1| S-adenosyl-methyltransferase MraW [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918680|gb|EFV40017.1| S-adenosyl-methyltransferase MraW [Enterobacteriaceae bacterium 9_2_54FAA] Length = 314 Score = 201 bits (512), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 126/314 (40%), Positives = 186/314 (59%), Gaps = 21/314 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMG--SNVIALDRDPFAVSCGQE 76 H VLL++ + LN + +D TFG GG+SR ++G ++A+DRDP A++ E Sbjct: 8 HKTVLLDEAVNGLNLRSNGIYIDGTFGRGGHSRLILSQLGPEGRLLAIDRDPQAIAAAAE 67 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +FS+ FS + YV + G ++GV+ DLGVSS Q+D +RGFSF + GP Sbjct: 68 IT---DPRFSIIHGPFSDMATYVRELGLEGQINGVLLDLGVSSPQLDDAERGFSFMRDGP 124 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G+SA++ + +A +D+ +L GEE+ A RIA AIV+R + P T +L Sbjct: 125 LDMRMDPTRGLSAAEWLMKAEEEDIAWVLKTFGEERFAKRIARAIVERNRLEPMTRTHEL 184 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++LI F + ++ HPATRSFQA+RI++N+E+EE+ + L A + L G L V+SFH Sbjct: 185 ATLIANASPFREKHK-HPATRSFQAIRIYINSELEEIERALNGALEILSPEGRLSVISFH 243 Query: 252 SLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVVV----PTQEDVAFNRR 305 SLEDR+VK+F SR +V A IP Q K + P+ ++V+ N R Sbjct: 244 SLEDRIVKQFIRHHSRGPQVPA---GIPLTEAQLRSQGGRKLKALGKMKPSSDEVSANPR 300 Query: 306 SRSAKLRAGMRTVE 319 +RS+ LR RTVE Sbjct: 301 ARSSVLRFAERTVE 314 >gi|197334561|ref|YP_002157005.1| S-adenosyl-methyltransferase MraW [Vibrio fischeri MJ11] gi|263504510|sp|B5FB43|RSMH_VIBFM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|197316051|gb|ACH65498.1| S-adenosyl-methyltransferase MraW [Vibrio fischeri MJ11] Length = 316 Score = 201 bits (512), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 128/313 (40%), Positives = 178/313 (56%), Gaps = 20/313 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 HV VLL + I L P + +D TFG GG+SR ++G N + ++DRDP A++ + Sbjct: 7 HVSVLLHESIDGLAIKPDGIYIDGTFGRGGHSRQILSQLGENGRLYSIDRDPQAIAEAK- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 T+ D K F++ FS L+ YV + +DGV+ DLGVSS Q+D +RGFSF K GP Sbjct: 66 TITDPK--FTIIHGPFSGLKQYVEELELVGKIDGVLLDLGVSSPQLDDAERGFSFMKDGP 123 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---PFQTT 188 LDMRM SGI S + +A+V+D+T ++ GE+K A RIA IV R++ P T Sbjct: 124 LDMRMDPTSGIPVSQWLQEADVEDITWVIREFGEDKHAWRIAKGIVAYRENEENEPLTRT 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ LI + S + HPATR+FQA RI++N+E++E+ L+ A L G L V+ Sbjct: 184 SQLAKLISEVAPKSFKEKKHPATRAFQAFRIYINSELDEIDTALKGALDVLAPEGRLSVI 243 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSN-----AHPAVFQSITKKVVVPTQEDVAFN 303 SFHSLEDR+VK F S K V H +P A + K + PT+ +V N Sbjct: 244 SFHSLEDRMVKHFIRKES-KGPQVPHGLPLTEEQIKALGSAKMKPVGKAIKPTKNEVDVN 302 Query: 304 RRSRSAKLRAGMR 316 RSRS+ LR R Sbjct: 303 VRSRSSVLRIAER 315 >gi|254491294|ref|ZP_05104474.1| S-adenosyl-methyltransferase MraW [Methylophaga thiooxidans DMS010] gi|224463423|gb|EEF79692.1| S-adenosyl-methyltransferase MraW [Methylophaga thiooxydans DMS010] Length = 312 Score = 201 bits (512), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 125/304 (41%), Positives = 184/304 (60%), Gaps = 14/304 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 +H+PVLL + IA L+ LDATFG GG+SR+ + S+ ++ LDRDP AV+ G+ Sbjct: 7 EHLPVLLNETIAALSVKADGKYLDATFGRGGHSRAILALLSDDGRLLGLDRDPQAVATGK 66 Query: 76 ETMRDYKEQFSLFQATFSQL----QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + +F++ FS++ + +DG++ D+GVSS Q+D +RGFSF K G Sbjct: 67 Q-LAQQDNRFAIEYCAFSEMATAAHARLWQNNIDGILMDIGVSSPQLDDAERGFSFSKDG 125 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ +GISA++ + A + D+ ++ LGEE+ RIA AIV+ R P TT+ Sbjct: 126 PLDMRMNPNAGISAAEWLATAEMDDIAHVIKTLGEERYGKRIARAIVETRDENPITTTKQ 185 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ L+ K S+ HPATR+FQA+RIF+NNE+EEL L A L GG L+V+SF Sbjct: 186 LADLVDKASP-SREKHKHPATRTFQAIRIFINNELEELTLALEQALDVLAVGGRLVVISF 244 Query: 251 HSLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 HSLEDR+VK+FF +R A + +P + I K + ++ ++A N R+RS Sbjct: 245 HSLEDRIVKRFFRDEARGDDFPAHFPVTVEQLNPRL--KIIGKAIKASETELADNPRARS 302 Query: 309 AKLR 312 A LR Sbjct: 303 AVLR 306 >gi|330828037|ref|YP_004390989.1| ribosomal RNA small subunit methyltransferase H [Aeromonas veronii B565] gi|328803173|gb|AEB48372.1| Ribosomal RNA small subunit methyltransferase H [Aeromonas veronii B565] Length = 312 Score = 201 bits (512), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 128/312 (41%), Positives = 184/312 (58%), Gaps = 16/312 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQ 75 +H+ VLL + + L P V +D TFG GG+SR + +G N +IA+DRDP A++ Sbjct: 6 EHITVLLHEAVEGLAIKPDGVYVDGTFGRGGHSRLILQHLGPNGRLIAIDRDPQAIA--- 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E + +F + FS + Y+ ++G VDG + DLGVSS Q+D +RGFSF K G Sbjct: 63 EAAKIQDPRFEIVHGPFSGIASYLDERGLLGKVDGFLLDLGVSSPQLDDAERGFSFMKDG 122 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM SG SA++ + +A+V D+ +L GEE+ A +IA AIV R + P+ T+ Sbjct: 123 PLDMRMDPTSGQSAAEWLAKADVDDIAWVLKTFGEERFAKKIARAIVHDRVTEPYVRTRQ 182 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ +I + V SK H ATRSFQA+RI++N+E++E+ L A + L G L V+SF Sbjct: 183 LAEMIAR-VNPSKEKGKHAATRSFQAIRIYINSELDEIETALNGALEVLAPHGRLSVISF 241 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSITK--KVVVPTQEDVAFNRRSR 307 HSLEDRLVK F + K V + IP + A A + + K + P+ +V+ N RSR Sbjct: 242 HSLEDRLVKHFI-RKHEKGPEVPYGIPLTEAQLAGGRKLKSVGKALKPSDHEVSENSRSR 300 Query: 308 SAKLRAGMRTVE 319 S+ LR R E Sbjct: 301 SSVLRVAERLAE 312 >gi|262273821|ref|ZP_06051634.1| S-adenosyl-methyltransferase MraW [Grimontia hollisae CIP 101886] gi|262222236|gb|EEY73548.1| S-adenosyl-methyltransferase MraW [Grimontia hollisae CIP 101886] Length = 317 Score = 201 bits (512), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 127/316 (40%), Positives = 187/316 (59%), Gaps = 21/316 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76 H+ VLL + I L P + +D TFG GG++R + +G N + ++DRDP A+ +E Sbjct: 7 HISVLLHESIDGLALKPDGIYVDGTFGRGGHTREILRRLGENGRLYSIDRDPQAI---EE 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F++ FS +Q Y+ +G +DGV+ DLGVSS Q+D +RGFSF + GP Sbjct: 64 AGKIDDPRFNIIHGPFSGIQQYMEARGLSGKIDGVLLDLGVSSPQLDDPERGFSFMRDGP 123 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---PFQTT 188 LDMRM SGI AS + +A+ D+ +L GEE+ A RIA AIV R+ P T Sbjct: 124 LDMRMDPTSGIPASQWLAEADADDIAWVLKEFGEERFAKRIARAIVAHREDETKEPLTRT 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L++LI +V S++ + HPATR FQA+RI++N+E+EE+ ++ A + L GG L ++ Sbjct: 184 LQLANLI-ASVSPSRDRKKHPATRCFQAIRIYINSELEEIETAMQGALEVLAPGGRLSII 242 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHP--AVFQSITK---KVVVPTQEDVAFN 303 SFHSLEDRLVK+F +S K V H +P A+ Q+ K K + P+ +V+ N Sbjct: 243 SFHSLEDRLVKRFIRKQS-KGPDVPHGVPLTEEQIRALGQAKMKPVGKALKPSDVEVSDN 301 Query: 304 RRSRSAKLRAGMRTVE 319 RSRS+ LR + E Sbjct: 302 TRSRSSVLRVAEKLGE 317 >gi|291616264|ref|YP_003519006.1| MraW [Pantoea ananatis LMG 20103] gi|291151294|gb|ADD75878.1| MraW [Pantoea ananatis LMG 20103] gi|327392716|dbj|BAK10138.1| S-adenosyl-methyltransferase MraW [Pantoea ananatis AJ13355] Length = 313 Score = 201 bits (512), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 126/310 (40%), Positives = 185/310 (59%), Gaps = 17/310 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + LN + +D TFG GG+SR ++G++ +IA+DRDP A++ E Sbjct: 7 HTTVLLDEAVNGLNIKEDGIYIDGTFGRGGHSRLILAQLGASGKLIAIDRDPQAIAAAAE 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 ++D + FS+ FS L DYV ++ +DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 67 -IKDPR--FSIVHGPFSALADYVAERELVGRIDGILLDLGVSSPQLDDAERGFSFMRDGP 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G SA++ + QA D+ +L GEE+ A RIA AIV+R + P T++L Sbjct: 124 LDMRMDPTRGHSAAEWLKQAEEADIAFVLKTYGEERFAKRIARAIVERNREQPMTRTKEL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +I K+ HPATRSFQA+RI++N+E+EE+ L+ A + L G L V+SFH Sbjct: 184 AEVIAAATPI-KDKFKHPATRSFQAIRIWINSELEEIDTALKGAVEVLAPQGRLSVISFH 242 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPS----NAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 SLEDRLVK+F +S R + + NA ++ K +VP +V N R+R Sbjct: 243 SLEDRLVKRFMRDQSRGPQVPRGLPMTEQQLNALGGRQLTLLGK-MVPGDAEVKENPRAR 301 Query: 308 SAKLRAGMRT 317 S+ LR RT Sbjct: 302 SSVLRIAERT 311 >gi|307244811|ref|ZP_07526910.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307253765|ref|ZP_07535619.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258222|ref|ZP_07539965.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306854256|gb|EFM86462.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306863249|gb|EFM95189.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867682|gb|EFM99527.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 313 Score = 201 bits (512), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 125/313 (39%), Positives = 182/313 (58%), Gaps = 18/313 (5%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPF 69 ++ T+ H+ VLL + + L P + +D TFG GG+SR S +IA DRDP Sbjct: 1 MNDTVHKHITVLLHEAVDGLAIKPNGIYIDGTFGRGGHSRLILSKLSEQGRLIATDRDPR 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGF 125 A++ T+ D + F + FS + D G +DG++ DLGVSS Q+D +RGF Sbjct: 61 AIAEAN-TIDDTR--FQIEHTAFSAIPDVCEQLGLTGKIDGILLDLGVSSPQLDDAERGF 117 Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF + GPLDMRM + G+SA++ + Q + DL +L GEE+ A RIA A+V +SA Sbjct: 118 SFMRDGPLDMRMDTTKGLSAAEWLAQVSADDLAWVLKTFGEERFAKRIAQAVVSYNKSAT 177 Query: 185 --FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 T L+ +I V F K+ HPATRSFQA+RIF+N+E++EL + L+SA L Sbjct: 178 NKISRTLQLAQIIADAVPF-KDKHKHPATRSFQAIRIFINSELDELEKALQSALSVLAPE 236 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP---SNAHPAVFQSITKKVVVPTQED 299 G L ++SFHSLEDR+VK+F ++ K M V +P S + + I K ++P++ + Sbjct: 237 GRLSIISFHSLEDRMVKQFM-KKNSKGMDVPKGLPILESELNKNIPLKIIGKAIMPSEAE 295 Query: 300 VAFNRRSRSAKLR 312 + N RSRSA LR Sbjct: 296 IEANPRSRSAVLR 308 >gi|300715300|ref|YP_003740103.1| S-adenosyl-methyltransferase MraW [Erwinia billingiae Eb661] gi|299061136|emb|CAX58243.1| S-adenosyl-methyltransferase MraW [Erwinia billingiae Eb661] Length = 313 Score = 201 bits (512), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 126/310 (40%), Positives = 175/310 (56%), Gaps = 15/310 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + LN + LD TFG GG+SR ++G + + A+DRDP A++ E Sbjct: 7 HTTVLLDEAVNGLNIKSDGIYLDGTFGRGGHSRLILSQLGEHGRLYAIDRDPQAIAAAAE 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +F + FS L DY + G +DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 67 IT---DPRFQIIHGPFSALADYADELGLTGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM G SAS + QA D+ +L GEE+ A RIA AIV+R + P T++L Sbjct: 124 LDMRMDPTKGQSASQWLLQAEESDIAFVLKTFGEERFAKRIARAIVERNREQPMTRTKEL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +I K+ HPATRSFQA+RI+VN+E+EE+ Q L+ A AL G L V+SFH Sbjct: 184 ADVIYAATPV-KDKFKHPATRSFQAIRIWVNSELEEIEQALKGALTALAPEGRLSVISFH 242 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV---VVPTQEDVAFNRRSRS 308 SLEDR+VK+F +S + + A A K ++P E+V N R+RS Sbjct: 243 SLEDRIVKRFMREQSRGPQVPAGIPMTEAQLAKLGGRHLKAFGKMMPGDEEVKENPRARS 302 Query: 309 AKLRAGMRTV 318 + LR RT Sbjct: 303 SVLRVAERTA 312 >gi|269956076|ref|YP_003325865.1| S-adenosyl-methyltransferase MraW [Xylanimonas cellulosilytica DSM 15894] gi|269304757|gb|ACZ30307.1| S-adenosyl-methyltransferase MraW [Xylanimonas cellulosilytica DSM 15894] Length = 351 Score = 201 bits (512), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 116/308 (37%), Positives = 181/308 (58%), Gaps = 11/308 (3%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74 H+PVLLE+ + LL PA PG V++D T G GG++ + +V+ +DRDP A+ Sbjct: 13 HLPVLLERCVDLLAPALAEPGSVLVDCTLGMGGHTEGVLERLPHVHVVGIDRDPQALRLA 72 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVP----DKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + ++F+ A + ++ D V D GV GV+ DLGVSS+Q+D RGF++ + Sbjct: 73 AARLARFGDRFTPVHAVYDEIGDVVARLGYDDGVQGVLMDLGVSSLQLDEAGRGFAYAQD 132 Query: 131 GPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM +G +A+DV+N + +LTRIL GEE+ A +IA +IV+RR P++ T Sbjct: 133 APLDMRMDQTTGPTAADVLNTYDEHELTRILREYGEERFAGKIARSIVRRRAERPWERTA 192 Query: 190 DLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L L++ + ++ +PA R+FQALRI VN E+E L + + +A +AL GG ++V Sbjct: 193 ELVDLVRACIPAATRKTGGNPAKRTFQALRIEVNGELEVLERAVPAAIEALAVGGRIVVE 252 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 S+HSLEDR+VK+ A + + H A +++T+ ++A N RS S Sbjct: 253 SYHSLEDRIVKRAIARGTTSSAPPGLPVEPETHRAYLEALTRGAEEADDAELARNPRSAS 312 Query: 309 AKLRAGMR 316 +LRA R Sbjct: 313 VRLRAAAR 320 >gi|15643635|ref|NP_228681.1| S-adenosyl-methyltransferase MraW [Thermotoga maritima MSB8] gi|8134815|sp|Q9WZX6|RSMH_THEMA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|4981407|gb|AAD35954.1|AE001753_10 conserved hypothetical protein [Thermotoga maritima MSB8] Length = 299 Score = 201 bits (512), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 116/309 (37%), Positives = 185/309 (59%), Gaps = 29/309 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77 H+PV++ +VI L P K+ILD T G GG+SR+ + G +I +D D + +E Sbjct: 8 HIPVMVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEK 67 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++++ ++ SLF+ ++ + + G VDG++ DLGVS+ Q+ +RGF+F++ PLD Sbjct: 68 LKEFSDRVSLFKVSYREADFLLKTLGIEKVDGILMDLGVSTYQLKGENRGFTFEREEPLD 127 Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQ-ASRIAHAIVKRRQSAPFQTTQDLS 192 MRM S ++A V+N+ ++L RI+ GEEK+ A RIA IV+ R P TT DL Sbjct: 128 MRMDLESEVTAQKVLNELPEEELARIIFEYGEEKRFARRIARKIVENR---PLNTTLDLV 184 Query: 193 SLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +++ + Y + + H AT++FQA+RI+VN E+E L + L+ AE L GG ++V+SF Sbjct: 185 KAVREALPSYEIRRRKRHFATKTFQAIRIYVNRELENLKEFLKKAEDLLNPGGRIVVISF 244 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDR+VK+ F R+ K + + +T+K V P++E++ N R+RS + Sbjct: 245 HSLEDRIVKETF--RNSKKLRI---------------LTEKPVRPSEEEIRENPRARSGR 287 Query: 311 LRAGMRTVE 319 LRA R E Sbjct: 288 LRAAERIEE 296 >gi|315181138|gb|ADT88052.1| S-adenosyl-methyltransferase MraW [Vibrio furnissii NCTC 11218] Length = 316 Score = 201 bits (512), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 126/309 (40%), Positives = 176/309 (56%), Gaps = 20/309 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H+ VLL + I L P + +D TFG GG+SR+ ++G N + ++DRDP A++ Q+ Sbjct: 7 HISVLLHESIDGLAIKPDGIYIDGTFGRGGHSRTILSQLGPNGRLYSIDRDPQAIAEAQK 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +F++ FS + +Y VDGV+FDLGVSS Q+D +RGFSF K GP Sbjct: 67 I---DDPRFTIVHGPFSGIAEYAARYELVGKVDGVLFDLGVSSPQLDDAERGFSFMKDGP 123 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---PFQTT 188 LDMRM SG+ S + QA++ D+T ++ GE+K A RIA AIV R++ P T Sbjct: 124 LDMRMDPTSGMPVSAWLAQADLDDITWVIREFGEDKHARRIAKAIVAYRENEENEPLTRT 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ LI S + HPATR+FQA RI++N+E+EE+ L+ A L G L V+ Sbjct: 184 SQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAASILAPQGRLSVI 243 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSN-----AHPAVFQSITKKVVVPTQEDVAFN 303 SFHSLEDR+VK+F S K V H IP A + K + P++ +VA N Sbjct: 244 SFHSLEDRMVKRFMRKES-KGPEVPHGIPLTQEQIRALGSADLRTVGKAIKPSEHEVAMN 302 Query: 304 RRSRSAKLR 312 RSRS+ LR Sbjct: 303 PRSRSSVLR 311 >gi|183599909|ref|ZP_02961402.1| hypothetical protein PROSTU_03430 [Providencia stuartii ATCC 25827] gi|188022184|gb|EDU60224.1| hypothetical protein PROSTU_03430 [Providencia stuartii ATCC 25827] Length = 316 Score = 201 bits (511), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 128/314 (40%), Positives = 177/314 (56%), Gaps = 20/314 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76 HV VLL++ + LN P + +D TFG GG+SR S +IA+DRDP A+ QE Sbjct: 8 HVTVLLDEAVNGLNIKPNGIYIDGTFGRGGHSRLILSQLNEQGRLIAIDRDPEAIKAAQE 67 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +F + FS + +YV ++G +DGV+ DLGVSS Q+D +RGFSF + GP Sbjct: 68 I---DDPRFMIKHGPFSAIAEYVEEEGLVGKIDGVLLDLGVSSPQLDDPERGFSFMRDGP 124 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR---QSAPFQTT 188 LDMRM + G SA + A D+ +L GEE+ A RIA AIV+R + P T Sbjct: 125 LDMRMDPTKGQSAQQWLMNAQADDIAWVLKTFGEERFAKRIAKAIVERNHNPEETPLTRT 184 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 ++L+ LI K + ++ HPATRSFQA+RI++N+E+EE+ Q L A L G L V+ Sbjct: 185 RELAELIAKVSPIKERHK-HPATRSFQAIRIYINSELEEIEQALEGAVSVLAPEGRLSVI 243 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVV----PTQEDVAFNR 304 SFHSLEDRLVK+F S K +V IP + K V P+ ++ N Sbjct: 244 SFHSLEDRLVKRFIRQNS-KGPSVPAGIPLTEAQIRELGVAKLREVGKMKPSDAEIDENP 302 Query: 305 RSRSAKLRAGMRTV 318 R+RS+ LR RT+ Sbjct: 303 RARSSVLRFAQRTL 316 >gi|121606314|ref|YP_983643.1| S-adenosyl-methyltransferase MraW [Polaromonas naphthalenivorans CJ2] gi|262824843|sp|A1VSU4|RSMH_POLNA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|120595283|gb|ABM38722.1| S-adenosyl-methyltransferase MraW [Polaromonas naphthalenivorans CJ2] Length = 306 Score = 201 bits (511), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 130/305 (42%), Positives = 180/305 (59%), Gaps = 13/305 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H VLL + I L P +DATFG GG+SR S V A D+D A++ Q Sbjct: 8 HRTVLLNEAITALQVNPDGHYIDATFGRGGHSRLLLSQLSALGRVTAFDKDLDAIAEAQ- 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 ++ D + FS+ F L D +P V GV+ DLGVSS QID +RGFSF+ GPLDMR Sbjct: 67 SIDDPR--FSIRHQGFMHL-DQMPQASVAGVLMDLGVSSPQIDNPERGFSFRNEGPLDMR 123 Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQTTQDLSSL 194 M + G S ++ + A+++ +T ++ GEE+ A +A AI +RRQ P QTT +L+ + Sbjct: 124 MDTTRGQSVAEWLQDASIEAMTEVIRDYGEERFAGLVARAIDRRRQEHGPLQTTAELADV 183 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 + V + + PATR+FQALRIF+N E+EEL Q L+++ K L+ GG L+V+SFHSLE Sbjct: 184 VASAVKTREPGK-DPATRTFQALRIFINAELEELQQALQASLKVLQPGGRLVVISFHSLE 242 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 DR+VK+F A+ S +V R A P V Q ++E+VA N RSRSA +R Sbjct: 243 DRIVKQFIAAHSREVYDRRAPF---AAPKVMQLKALGRTKASEEEVAGNPRSRSAVMRVA 299 Query: 315 MRTVE 319 RT E Sbjct: 300 ERTGE 304 >gi|311895546|dbj|BAJ27954.1| putative S-adenosyl-L-methionine-dependent methyltransferase MraW [Kitasatospora setae KM-6054] Length = 322 Score = 201 bits (511), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 119/308 (38%), Positives = 182/308 (59%), Gaps = 12/308 (3%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCG 74 H+PV+LE+ + L PA PG V++DAT G GG+S + +V IA+DRDP A+ Sbjct: 10 HIPVMLERCLDALAPAISTPGAVVVDATLGLGGHSEALLTRFPDVRLIAVDRDPRALELS 69 Query: 75 QETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E + + ++ +L A + ++ D + V GV+FDLGVSSMQ+D DRGF++ + Sbjct: 70 AERLARFGDRATLVHAVYDEIPRVLDELDVPEVHGVLFDLGVSSMQLDEADRGFAYSQDA 129 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM GISA++V+N DL RIL + GEE+ A +IA A+++ R+ PF + Sbjct: 130 PLDMRMDQTRGISAAEVLNTYGHGDLARILKVYGEERFAGKIASAVLREREREPFTNSAR 189 Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L L++ + ++ +PA R+FQALRI VN E+E L + + A AL GG ++V+S Sbjct: 190 LVELVRNAIPAATRRTGGNPAKRTFQALRIEVNGELEVLDRAIPGALDALAVGGRIVVMS 249 Query: 250 FHSLEDRLVKKFF-ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 + SLEDRLVK++F A + +IP P + +T+ + T+E++ NRR+ Sbjct: 250 YQSLEDRLVKQYFQAGATSTAPPGLPVIPEELQP-WLKLLTRGAELATEEEIEENRRAAP 308 Query: 309 AKLRAGMR 316 +LR R Sbjct: 309 VRLRVAER 316 >gi|152996635|ref|YP_001341470.1| S-adenosyl-methyltransferase MraW [Marinomonas sp. MWYL1] gi|263456400|sp|A6VYK6|RSMH_MARMS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|150837559|gb|ABR71535.1| S-adenosyl-methyltransferase MraW [Marinomonas sp. MWYL1] Length = 312 Score = 201 bits (511), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 116/304 (38%), Positives = 179/304 (58%), Gaps = 9/304 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73 T+ +H+ V+L + + +L + +D TFG GG++R ++ D+DP A+ Sbjct: 4 TMAEHISVMLNESVDMLVTDTNGLYVDGTFGRGGHTRLVLDRLDKGRLLGFDKDPVAIGH 63 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 G+ + +FS+ Q +F+ + +++ + VDGV+ DLGVSS QID +RGFSF Sbjct: 64 GK-LLEQEDARFSIVQDSFANMAEHITNVFGVDRVDGVMMDLGVSSPQIDDAERGFSFMN 122 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM+ G SA++ + + KD+ ++ GEE+ + RIA AI + R P TT Sbjct: 123 DGPLDMRMNPDKGQSAAEWIATVSEKDMADVMYQYGEERFSRRIAKAICEYRSHTPILTT 182 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 LS +I + + + +PATR+FQ +RI++NNE+ +L GL +A +ALK GG L V+ Sbjct: 183 LQLSKIIAEANPAWEKGK-NPATRAFQGIRIYINNELGDLEIGLEAAAQALKVGGRLAVI 241 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDR+VK+F ++ RH+ NAH + K + P+Q +V+ N RSRS Sbjct: 242 SFHSLEDRIVKRFMKLQAKGPELPRHLPIRNAHLDIKFKTVGKAIKPSQSEVSENVRSRS 301 Query: 309 AKLR 312 A LR Sbjct: 302 AVLR 305 >gi|307151535|ref|YP_003886919.1| S-adenosyl-methyltransferase MraW [Cyanothece sp. PCC 7822] gi|306981763|gb|ADN13644.1| S-adenosyl-methyltransferase MraW [Cyanothece sp. PCC 7822] Length = 299 Score = 201 bits (511), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 129/315 (40%), Positives = 188/315 (59%), Gaps = 32/315 (10%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDR 66 MS+A T +HVPVL ++I+ LN PG LDAT GAGG++R + +N V A+DR Sbjct: 7 MSTADFSTF-NHVPVLTRELISGLNICPGGHYLDATVGAGGHTRKLLESYANVRVTAIDR 65 Query: 67 DPFAVSCGQETMRDYK-EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125 D A++ + +Y ++ + +Q F+ + ++ DG++ DLGVSS Q+D +RGF Sbjct: 66 DSTAIAAAAANLAEYNIDRLTFWQGNFANYE--AKEETFDGIIADLGVSSPQLDHPERGF 123 Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF+ PLDMRM C ++A+ V+N + +LT+I GEE+ + +IA IVK+R P Sbjct: 124 SFRLEAPLDMRMDCGQSLTAATVINTWDETELTKIFYNYGEERLSRQIAKQIVKQR---P 180 Query: 185 FQTTQDLSSLIQKTV---YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 F +T +L+++I ++V Y + RIHPATR FQALRI VN E+E L L + LK Sbjct: 181 FYSTTELANVIARSVPPKY--RYGRIHPATRVFQALRIAVNQELESLLSFLIKSPYWLKR 238 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 G++ V+SFHSLEDR+VK F RS ++ V +TKK ++P ++ A Sbjct: 239 DGIIGVISFHSLEDRIVKHQF--RSSPLLKV---------------LTKKPIIPQSDEQA 281 Query: 302 FNRRSRSAKLRAGMR 316 N RSRSAKLR R Sbjct: 282 KNPRSRSAKLRLAQR 296 >gi|221065130|ref|ZP_03541235.1| S-adenosyl-methyltransferase MraW [Comamonas testosteroni KF-1] gi|220710153|gb|EED65521.1| S-adenosyl-methyltransferase MraW [Comamonas testosteroni KF-1] Length = 309 Score = 201 bits (511), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 132/307 (42%), Positives = 183/307 (59%), Gaps = 17/307 (5%) Query: 20 HVPVLL-EKVIALLNPA---PGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVS 72 H+ VLL E V ALL A P +DATFG GG+SR + +G + +IA D+DP A++ Sbjct: 7 HITVLLDEAVDALLGGAAEPPAGQWVDATFGRGGHSRLILRRLGPDGRLIAFDKDPDAIA 66 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E R +FS+ F L + +P+ V GV+ DLGVSS QID DRGFSF+ GP Sbjct: 67 ---EAARITDARFSIRHEGFRHLSE-LPEGSVQGVLMDLGVSSPQIDNPDRGFSFRFDGP 122 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQTTQD 190 LDMRM + G S ++ + A V+ + ++ GEE+ A IA AIV RR+S P +TT + Sbjct: 123 LDMRMDTTRGQSVAEWLEDAEVQQIAEVIRDYGEERFAGPIAKAIVARRESQGPLRTTAE 182 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ L+ V + + +PATR+FQALRIF+N E++EL Q L ++ + L GG L V+SF Sbjct: 183 LAQLVAGAVKTREAGQ-NPATRTFQALRIFINAELQELEQALEASLRVLAPGGRLAVISF 241 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDR+VK+F A S +V R A P + + + P+ +VA N RSRSA Sbjct: 242 HSLEDRIVKQFIAKHSKEVYDRRAPF---APPTPMRLKALERIKPSAAEVAANPRSRSAV 298 Query: 311 LRAGMRT 317 +R RT Sbjct: 299 MRVAERT 305 >gi|218886065|ref|YP_002435386.1| S-adenosyl-methyltransferase MraW [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|263446322|sp|B8DP86|RSMH_DESVM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|218757019|gb|ACL07918.1| S-adenosyl-methyltransferase MraW [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 361 Score = 201 bits (511), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 123/311 (39%), Positives = 173/311 (55%), Gaps = 11/311 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQE 76 HVPVLL++V+ L P PG LD T G GG+S + ++G + + LDRD A+ ++ Sbjct: 26 HVPVLLDEVLEALAPRPGGRYLDGTVGLGGHSAAIMERIGPDGELCCLDRDTTALGLARQ 85 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + + F ++ + + G VDG + D+GVSSMQID DRGFSF GPL Sbjct: 86 RLAPWGGRVHFFHTRYADFEAALDQLGWDKVDGALIDIGVSSMQIDMADRGFSFHADGPL 145 Query: 134 DMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 DMRM G AS +VN+A V L I+ GE+ A RIA AIV R + P +TT L Sbjct: 146 DMRMDRDGDEAPASRLVNRATVDVLKDIILRYGEDPMAGRIARAIVDARAAGPIETTAQL 205 Query: 192 SSLIQKT--VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 ++++ + + +R HPATR+FQALR+ VN+E+ +L + L L GG L V++ Sbjct: 206 AAIVDRAYPAKWRATSRNHPATRTFQALRMAVNDELGQLERFLDRILDRLNPGGRLAVIT 265 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSN-AHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK S + R + H A +T+K V T ++A N R+ S Sbjct: 266 FHSLEDRIVKHRLRDESQGCVCPRSVSRCECGHKARVDVLTRKPVTATDAELARNSRASS 325 Query: 309 AKLRAGMRTVE 319 AKLRA R E Sbjct: 326 AKLRAAQRLAE 336 >gi|270263951|ref|ZP_06192219.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Serratia odorifera 4Rx13] gi|270042144|gb|EFA15240.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Serratia odorifera 4Rx13] Length = 313 Score = 201 bits (511), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 123/310 (39%), Positives = 187/310 (60%), Gaps = 19/310 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMG--SNVIALDRDPFAVSCGQE 76 H VLL++ + LN + +D TFG GG+SR ++G ++A+DRDP A++ + Sbjct: 7 HTTVLLDEAVNGLNIRSNGIYIDGTFGRGGHSRLILSQLGPEGRLLAIDRDPQAIAAAK- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 ++ D + F++ FS L YV ++ +DGV+ DLGVSS Q+D +RGFSF + GP Sbjct: 66 SIEDPR--FTIVHGPFSDLSHYVRERELVGQIDGVLLDLGVSSPQLDDAERGFSFMRDGP 123 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM SG SAS+ + +A D+ +L GEE+ A RIA AIV+R + P T++L Sbjct: 124 LDMRMDPSSGQSASEWLLKAEADDIAWVLKTFGEERFAKRIARAIVERNRVEPMTRTKEL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI F + ++ HPATRSFQA+RI++N+E+EE+ + L A + L G L ++SFH Sbjct: 184 ADLIANASPFREKHK-HPATRSFQAIRIYINSELEEIERALDGALEVLAPQGRLSIISFH 242 Query: 252 SLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306 SLEDR+VK+F SR +V A + +++ K ++P+Q++VA N R+ Sbjct: 243 SLEDRIVKRFMRHHSRGAQVPAGLPLTEEQLRGMGGRTLKALGK--MMPSQDEVAENPRA 300 Query: 307 RSAKLRAGMR 316 RS+ LR R Sbjct: 301 RSSVLRIAER 310 >gi|256830379|ref|YP_003159107.1| S-adenosyl-methyltransferase MraW [Desulfomicrobium baculatum DSM 4028] gi|256579555|gb|ACU90691.1| S-adenosyl-methyltransferase MraW [Desulfomicrobium baculatum DSM 4028] Length = 320 Score = 201 bits (511), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 120/311 (38%), Positives = 180/311 (57%), Gaps = 13/311 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 DH+PV+LE+V+ + P PG +DAT G GG++ ++ + ++ LDRD A++ Sbjct: 6 DHIPVMLEEVMHWIAPRPGGFYMDATLGLGGHAARLMELTNGQARLLGLDRDEQALAKAG 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + Y E L +F + + G +DGV+ DLGVSS+Q+D +RGFSF + GP Sbjct: 66 ERLAQYGENVQLAHTSFQHFSRALREVGWDKLDGVIADLGVSSLQLDSPERGFSFLQDGP 125 Query: 133 LDMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM G AS +VN A+ + L ++L GEE A RIA AIVK R++A +T + Sbjct: 126 LDMRMDPGSGGEPASVIVNGASFERLRQLLWDYGEEPMAGRIAGAIVKIRETARIDSTLE 185 Query: 191 LSSLIQKTVYFSKN---NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 L+ ++ Y +K +R HPAT++FQALR+ VN E+ E+ L L+ G + V Sbjct: 186 LARIV-AAAYPAKRRALSRNHPATKTFQALRLEVNQELREVEFFLERIVDHLRPGARICV 244 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 +SFHSLEDR+VK+ F S + R + + H + +K ++PT++++ N RS Sbjct: 245 ISFHSLEDRIVKRAFRKESSACLCPREYPVCQCGHTQKLRLPFRKPLIPTEDEMRANSRS 304 Query: 307 RSAKLRAGMRT 317 RSAKLR R Sbjct: 305 RSAKLRVAERV 315 >gi|300722051|ref|YP_003711331.1| S-adenosyl-dependent methyl transferase [Xenorhabdus nematophila ATCC 19061] gi|297628548|emb|CBJ89120.1| S-adenosyl-dependent methyl transferase [Xenorhabdus nematophila ATCC 19061] Length = 314 Score = 201 bits (511), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 122/304 (40%), Positives = 178/304 (58%), Gaps = 15/304 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + LN + +D TFG GG+SR K+G N ++A+DRDP A+ + Sbjct: 8 HTSVLLDEAVNGLNIQEDGIYIDGTFGRGGHSRLILSKLGPNGRLMAIDRDPQAIEASKA 67 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E+FS+ FS+L YV D ++GV+ DLGVSS Q+D +RGFSF + GP Sbjct: 68 IT---DERFSITHGPFSELATYVEDADLVGKINGVLLDLGVSSPQLDDPERGFSFMRDGP 124 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G SAS+ + +A +D+ +L GEE+ A RIA AIV R Q P T++L Sbjct: 125 LDMRMDPTRGQSASEWLMKAEEEDIAWVLKTFGEERFAKRIARAIVARSQEQPMTRTREL 184 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI + + ++ HPATRSFQA+RI++N+E+EE+ + L A + L G L V+SFH Sbjct: 185 AELIAQASPIKEKHK-HPATRSFQAIRIYINSELEEIERALDGALRVLAPQGRLSVISFH 243 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNRRSRS 308 SLEDR+VK+F S + + A + K + P+ ++VA N R+RS Sbjct: 244 SLEDRIVKRFIRQNSQGPQVPAGLPLTEAQLKAMGGRSLKFIGKMKPSGDEVATNPRARS 303 Query: 309 AKLR 312 + LR Sbjct: 304 SVLR 307 >gi|254230425|ref|ZP_04923805.1| S-adenosyl-methyltransferase MraW [Vibrio sp. Ex25] gi|262395267|ref|YP_003287121.1| S-adenosyl-methyltransferase MraW [Vibrio sp. Ex25] gi|151937058|gb|EDN55936.1| S-adenosyl-methyltransferase MraW [Vibrio sp. Ex25] gi|262338861|gb|ACY52656.1| S-adenosyl-methyltransferase MraW [Vibrio sp. Ex25] Length = 316 Score = 201 bits (511), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 124/309 (40%), Positives = 176/309 (56%), Gaps = 20/309 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H+ VLL + I L P + +D TFG GG+SR+ K+G N + ++DRDP A++ E Sbjct: 7 HISVLLNESIDGLAIKPDGIYIDGTFGRGGHSRTILSKLGENGRLYSIDRDPQAIA---E 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F++ FS + +Y + VDGV+ DLGVSS Q+D +RGFSF K GP Sbjct: 64 AGKINDPRFTIIHGPFSGIAEYAEEYDLVGKVDGVLLDLGVSSPQLDDAERGFSFMKDGP 123 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ---SAPFQTT 188 LDMRM SGI S + +A++ D+T ++ GE+K A RIA AIV R+ + P T Sbjct: 124 LDMRMDPTSGIPVSQWLMEADLDDITWVIREFGEDKHARRIAKAIVAYREDEENEPLVRT 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ LI S + HPATR+FQA RI++N+E+EE+ L+ A L G L V+ Sbjct: 184 GQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAASILAPEGRLSVI 243 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSN-----AHPAVFQSITKKVVVPTQEDVAFN 303 SFHSLEDR+VK+F S K V H IP A + K + P+++++ N Sbjct: 244 SFHSLEDRMVKRFIRKES-KGPEVPHGIPMTEEQIRALGSANMKAVSKAIKPSKQEIEMN 302 Query: 304 RRSRSAKLR 312 RSRS+ LR Sbjct: 303 PRSRSSVLR 311 >gi|195055510|ref|XP_001994660.1| GH14890 [Drosophila grimshawi] gi|193892423|gb|EDV91289.1| GH14890 [Drosophila grimshawi] Length = 368 Score = 201 bits (511), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 130/332 (39%), Positives = 184/332 (55%), Gaps = 39/332 (11%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQE 76 HVPVL + I L P P +D TFGAGG++R C + V ALDRDP A Q Sbjct: 39 HVPVLCQTAIEYLEPRPKGKYIDMTFGAGGHTRRLLDSCPEAT-VYALDRDPIAYELAQR 97 Query: 77 TMRD--YKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQK 129 ++ Y + FS L + D+ V DG++FD G SSMQ D RGFS Sbjct: 98 LSQESAYAGRLVPLLGKFSDLPQLLTDRNVPRHSFDGILFDFGCSSMQFDEAARGFSIAH 157 Query: 130 SGPLDMRMSCS---GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP-F 185 +GPLDMRM C G+SA+DV+ + DL RIL + GEEK A +IA AIV+ R + Sbjct: 158 NGPLDMRMDCGRSGGVSAADVLARIEEADLARILRVYGEEKAAKKIARAIVEARGALQRI 217 Query: 186 QTTQDLSSLIQKTVYFSKNNR-----IHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 +TT+ L+ L+ + + H AT++FQALRIFVNNE+ E+ G+ A++ L+ Sbjct: 218 ETTRQLAELVASVLGDGQRQDKLQRPAHLATKTFQALRIFVNNELNEINYGMLLAQEYLR 277 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVM-AVRHMIPSN--AH-----PAV-------- 284 A G L+ ++FHSLED +VK+ +G V+ V + +P H PA+ Sbjct: 278 AQGRLVAITFHSLEDTIVKRHI---NGNVIEGVANPLPLKYCGHDITHDPALLESFVQSN 334 Query: 285 FQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 +Q + + V++P ++A N RSRSAKLRA ++ Sbjct: 335 WQQLHRHVILPDATEIASNSRSRSAKLRAAIK 366 >gi|326440704|ref|ZP_08215438.1| 16S rRNA m(4)C1402 methyltranserfase [Streptomyces clavuligerus ATCC 27064] Length = 309 Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 126/307 (41%), Positives = 181/307 (58%), Gaps = 12/307 (3%) Query: 24 LLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETM 78 +L++ + LL PA PG V++D T G GG+S + G +IALDRDP A+ E + Sbjct: 1 MLQRCLDLLAPALESPGAVVVDCTLGLGGHSEALLSRFPGVRLIALDRDPEALRLSAERL 60 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 Y E+ +L A + +L + GV GV+FDLGVSSMQ+D DRGF++ + PLDM Sbjct: 61 APYGERATLVHAVYDELPAVLARLGVPRVQGVLFDLGVSSMQLDEADRGFAYAQDAPLDM 120 Query: 136 RMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM +G+SA++V+N +L RIL GEEKQA RI AIV+ R + PF T+ L L Sbjct: 121 RMDQTTGMSAAEVLNTYPPGELVRILRAYGEEKQAKRIVSAIVRERVNEPFSTSARLVEL 180 Query: 195 IQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 I+ + +K +PA R+FQALRI VN E+ L + + +A AL G + V+S+HSL Sbjct: 181 IRDALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAVPAAVAALAVEGRIAVLSYHSL 240 Query: 254 EDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 EDRLVK+ FA+ + ++P P + +T+ +PT ++VA NRR+ A+LR Sbjct: 241 EDRLVKQVFAAGAATTAPPGLPVVPEEYQPR-LRLLTRGAELPTDDEVAENRRAAPARLR 299 Query: 313 AGMRTVE 319 R E Sbjct: 300 GAQRIRE 306 >gi|170287862|ref|YP_001738100.1| S-adenosyl-methyltransferase MraW [Thermotoga sp. RQ2] gi|262825881|sp|B1LCF9|RSMH_THESQ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|170175365|gb|ACB08417.1| S-adenosyl-methyltransferase MraW [Thermotoga sp. RQ2] Length = 299 Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 116/306 (37%), Positives = 184/306 (60%), Gaps = 29/306 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77 H+PV++ +VI L P K+ILD T G GG+SR+ + G +I +D D + +E Sbjct: 8 HIPVMVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEK 67 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++++ ++ SLF+ ++ + + GV DG++ DLGVS+ Q+ +RGF+F++ PLD Sbjct: 68 LKEFSDRASLFKISYREADFLLKTLGVEKVDGILMDLGVSTYQLKGENRGFTFEREEPLD 127 Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQ-ASRIAHAIVKRRQSAPFQTTQDLS 192 MRM S ++A V+N+ ++L RI+ GEEK+ A RIA IV+ R P TT DL Sbjct: 128 MRMDLESEVTAQKVLNELPEEELARIIFEYGEEKKFARRIARKIVENR---PLNTTLDLV 184 Query: 193 SLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +++ + Y + + H AT++FQA+RI+VN E+E L + LR AE L GG ++V+SF Sbjct: 185 KAVREALPSYEIRRRKRHFATKTFQAIRIYVNRELENLKEFLRKAEDLLNPGGRIVVISF 244 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDR+VK+ F R+ K + + +T+K V P++E++ N R+RS + Sbjct: 245 HSLEDRIVKETF--RNSKKLRI---------------LTEKPVRPSEEEIRENPRARSGR 287 Query: 311 LRAGMR 316 LRA R Sbjct: 288 LRAAER 293 >gi|307244139|ref|ZP_07526257.1| S-adenosyl-methyltransferase MraW [Peptostreptococcus stomatis DSM 17678] gi|306492510|gb|EFM64545.1| S-adenosyl-methyltransferase MraW [Peptostreptococcus stomatis DSM 17678] Length = 311 Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 119/307 (38%), Positives = 179/307 (58%), Gaps = 13/307 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 +HV VLL + I LN P V +D T G G+SR K S+ ++ D+D A++ + Sbjct: 4 NHVSVLLNECIENLNIKPDGVYVDCTMGGAGHSREIAKRLSDKGRLVCFDQDINAINVAK 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +++Y ++ L + F L++ + +G+ DGV+ DLGVSS Q+D DRGFS+ Sbjct: 64 DRLKEYNDRVVLVHSNFENLKEELESRGIFKIDGVLADLGVSSHQLDEADRGFSYMHDAR 123 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + +SA VVN+ + +DL I+ GEEK A RIA IVK R TT DL Sbjct: 124 LDMRMDDRASMSAWQVVNEYSQEDLYTIIKDYGEEKWAKRIAEFIVKERADHSIDTTFDL 183 Query: 192 SSLIQKTVYFSKNNRI---HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +I+K + K RI HPA R+FQA+RI VNNE+ + + +R A + GG + ++ Sbjct: 184 VDVIKKAI--PKGARIDGPHPAKRTFQAIRIEVNNELGVINKMIRDAVSMMNKGGRICII 241 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+VK F + + + + + + IT+K ++P++E+V FN RSR Sbjct: 242 TFHSLEDRIVKNEFRDLNKDCICPPELPFCQCNKKSELKIITRKPILPSEEEVDFNPRSR 301 Query: 308 SAKLRAG 314 S+KLR G Sbjct: 302 SSKLRVG 308 >gi|229820904|ref|YP_002882430.1| S-adenosyl-methyltransferase MraW [Beutenbergia cavernae DSM 12333] gi|263447254|sp|C5BW67|RSMH_BEUC1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|229566817|gb|ACQ80668.1| S-adenosyl-methyltransferase MraW [Beutenbergia cavernae DSM 12333] Length = 333 Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 123/320 (38%), Positives = 181/320 (56%), Gaps = 14/320 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIA 63 MS+ H PVL ++ + LL PA G V++DAT G GG+S + + V+ Sbjct: 1 MSTPDAQAAALHAPVLAQRCVDLLAPALESDGAVLVDATLGMGGHSELVLEQCPHARVLG 60 Query: 64 LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDC 120 +DRDP A+ + + ++F+ A + ++ D V GV+FDLGVSS+Q+D Sbjct: 61 IDRDPRALELATARLARFGQRFTPVHAVYDEIDDVARQHAGGAVQGVLFDLGVSSLQLDD 120 Query: 121 GDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 RGF++ + PLDMRM +G +A+D++ A+ +L RIL GEEK A RIA AIV+R Sbjct: 121 AGRGFAYAQDAPLDMRMDPTTGPTAADLLADADEAELRRILRTYGEEKFAPRIAAAIVRR 180 Query: 180 RQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R++AP + + DL +++ + S + HPA R+FQALRI VN E+E L + L A A Sbjct: 181 REAAPLRRSSDLVEVVRGAIPMSAQRTGGHPAKRTFQALRIAVNRELEVLERALPRAIDA 240 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPT 296 L GG ++V S+HSLEDRLVK+ A R A RH+ +P P + +T Sbjct: 241 LAVGGRIVVESYHSLEDRLVKRELA-RGATSSAPRHLPVVPEEDQP-YLELLTHGAEQAD 298 Query: 297 QEDVAFNRRSRSAKLRAGMR 316 ++A N R+ S +LRA R Sbjct: 299 DVELAANPRAASVRLRAARR 318 >gi|238918670|ref|YP_002932184.1| S-adenosyl-methyltransferase MraW, [Edwardsiella ictaluri 93-146] gi|263447473|sp|C5B9E8|RSMH_EDWI9 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|238868238|gb|ACR67949.1| S-adenosyl-methyltransferase MraW, putative [Edwardsiella ictaluri 93-146] Length = 313 Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 124/310 (40%), Positives = 185/310 (59%), Gaps = 19/310 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ +A LN + +D TFG GG+SR ++G+ +IA+DRDP A++ + Sbjct: 7 HKTVLLDEAVAGLNLRSDGIYIDGTFGRGGHSRLILSQLGAEGRLIAIDRDPQAIAAAAQ 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +FS+ FS L DYV + G +DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 67 ID---DPRFSIIHGPFSALADYVQEMGLSSRIDGILLDLGVSSPQLDDPERGFSFMRDGP 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G+SA+ + QA D+ +L GEE+ A RIA AIV+R ++ P T++L Sbjct: 124 LDMRMDPSRGLSAAQWLMQAEEDDIAWVLKTFGEERFAKRIARAIVERNRTEPLSRTREL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++LI F + ++ HPATRSFQA+RI++N+E++E+ + L A AL G L V+SFH Sbjct: 184 AALISDASPFKEKHK-HPATRSFQAIRIYINSELDEIERALEGALVALAPQGRLSVISFH 242 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRRS 306 SLEDRLVK+F S + + + A +++ K+ +P + +V N R+ Sbjct: 243 SLEDRLVKRFIRQYSRGPQVPKGLPLTEAQLQAQGGPQLKALGKR--MPGEREVVDNPRA 300 Query: 307 RSAKLRAGMR 316 RS+ LR R Sbjct: 301 RSSVLRVAER 310 >gi|268591763|ref|ZP_06125984.1| S-adenosyl-methyltransferase MraW [Providencia rettgeri DSM 1131] gi|291312724|gb|EFE53177.1| S-adenosyl-methyltransferase MraW [Providencia rettgeri DSM 1131] Length = 317 Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 130/317 (41%), Positives = 183/317 (57%), Gaps = 24/317 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQE 76 HV VLL++ + LN P + +D TFG GG+SR ++G N +IA+DRDP A+ Q Sbjct: 8 HVTVLLDEAVNGLNIKPNGIYIDGTFGRGGHSRLILSQLGENGRLIAIDRDPEAIKAAQ- 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 T+ D + F + FS + +YV ++G +DGV+ DLGVSS Q+D +RGFSF + GP Sbjct: 67 TIDDPR--FMIKHGPFSAIAEYVEEEGLVGQIDGVLLDLGVSSPQLDDPERGFSFMRDGP 124 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR---QSAPFQTT 188 LDMRM + G SA + A D+ +L GEE+ A RIA AIV+R + P T Sbjct: 125 LDMRMDPTKGQSAQQWLMDAEADDIAWVLKTFGEERFAKRIARAIVERNHNPEEEPLTRT 184 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 + L+ LI K V K+ HPATRSFQA+RI++N+E+EE+ + L A L G L V+ Sbjct: 185 RHLAELIAK-VSPMKDRHKHPATRSFQAIRIYINSELEEIEKALEGAMNVLAPQGRLSVI 243 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIP------SNAHPAVFQSITKKVVVPTQEDVAF 302 SFHSLEDRLVK+F S K +V IP A + + K + P++ ++ Sbjct: 244 SFHSLEDRLVKRFIRKNS-KGPSVPAGIPLTEAQIKELGAAQLRDLGK--MKPSENEIDE 300 Query: 303 NRRSRSAKLRAGMRTVE 319 N R+RS+ LR + E Sbjct: 301 NPRARSSVLRFAEKAAE 317 >gi|197285925|ref|YP_002151797.1| S-adenosyl-methyltransferase [Proteus mirabilis HI4320] gi|227356432|ref|ZP_03840820.1| S-adenosyl-methyltransferase [Proteus mirabilis ATCC 29906] gi|262824977|sp|B4F119|RSMH_PROMH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|194683412|emb|CAR44158.1| S-adenosyl-methyltransferase [Proteus mirabilis HI4320] gi|227163542|gb|EEI48463.1| S-adenosyl-methyltransferase [Proteus mirabilis ATCC 29906] Length = 315 Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 129/315 (40%), Positives = 180/315 (57%), Gaps = 22/315 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + LN P + +D TFG GG+SR ++G +IA+DRDP A++ E Sbjct: 8 HTSVLLDEAVNGLNIKPSGIYIDGTFGRGGHSRLILSQLGEQGRLIAIDRDPQAIAVANE 67 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +FS+ FS ++ Y+ + G VDGV+ DLGVSS Q+D +RGFSF + GP Sbjct: 68 I---DDPRFSIIHGPFSNIEHYINELGLSGKVDGVLLDLGVSSPQLDDPERGFSFMRDGP 124 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA-PFQTTQD 190 LDMRM +G SA+ + A D+T +L GEE+ A RIA AIV R ++ P T+ Sbjct: 125 LDMRMDPTTGQSAAQWLMNAEEDDITWVLKTFGEERFAKRIARAIVARNKTEEPLTRTKQ 184 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ LI + + ++ HPATRSFQA+RI++N+E++E+ + L+ A L G L V+SF Sbjct: 185 LADLISEASPVKERHK-HPATRSFQAIRIYINSELDEIEKALKGAVSILAPAGRLSVISF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAH------PAVFQSITKKVVVPTQEDVAFNR 304 HSLEDRLVK+F S K V IP A SI K + PT +V N Sbjct: 244 HSLEDRLVKRFIRDES-KGPVVPAGIPLTEEQIKALGSARLSSIHK--MKPTGVEVEENP 300 Query: 305 RSRSAKLRAGMRTVE 319 R+RS+ LR R E Sbjct: 301 RARSSVLRVAQRIEE 315 >gi|262831577|sp|A4VIH0|RSMH_PSEU5 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 315 Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 122/305 (40%), Positives = 183/305 (60%), Gaps = 16/305 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76 H+ VLL++ +A LN LD TFG GG+SR + +G N ++ D+DP A++ GQ Sbjct: 9 HITVLLDEAVAALNVRADGRYLDGTFGRGGHSRLLLQQLGPNGQLLGFDKDPLAIATGQ- 67 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F + Q +F++L D V +G V G++ DLGVSS Q+D RGFSF GP Sbjct: 68 ALAAEDGRFVVVQRSFAELGDEVAQRGWTGAVSGILLDLGVSSPQLDDPIRGFSFLNDGP 127 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G+SA++ + A+ ++ R+ GEE+ A R+A A+V+RR APF+ T DL Sbjct: 128 LDMRMDPSRGVSAAEWIASADEDEIARVFKDYGEERFAKRMARAVVQRRAEAPFERTADL 187 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ + + PATR+FQ LRI +NNE+ +L +GL +A AL+ GG L+V+SFH Sbjct: 188 AKVLTDANPAWEKGK-SPATRAFQGLRIHINNELGDLERGLDAALDALEVGGRLVVISFH 246 Query: 252 SLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVP---TQEDVAFNRRSR 307 SLEDR+VK+F + G+ + +P P F+ K + P ++ +V N RSR Sbjct: 247 SLEDRIVKQFMRRHAKGEADKLPRDLP--IIPKAFEPRLKLIGKPQYASEAEVKANPRSR 304 Query: 308 SAKLR 312 SA +R Sbjct: 305 SAVMR 309 >gi|77460902|ref|YP_350409.1| S-adenosyl-methyltransferase MraW [Pseudomonas fluorescens Pf0-1] gi|88909213|sp|Q3K736|RSMH_PSEPF RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|77384905|gb|ABA76418.1| S-adenosyl-methyltransferase [Pseudomonas fluorescens Pf0-1] Length = 315 Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 124/309 (40%), Positives = 183/309 (59%), Gaps = 22/309 (7%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQ 75 +H+ VLL++ + L P LD TFG GG+SR K+G + +I D+DP A++ GQ Sbjct: 8 NHITVLLDEAVEALAVRPDGCYLDGTFGRGGHSRLILSKLGPDGRLIGFDKDPQAIATGQ 67 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 T+ +F + Q +F++L V ++G V G++ DLGVSS Q+D +RGFSF G Sbjct: 68 -TLAAEDGRFVVVQRSFAELGSVVAERGLTGKVSGILLDLGVSSPQLDDAERGFSFLNDG 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S GISA++ VN A V+++ R+ GEE+ + R+A A+V+RR PF+ T D Sbjct: 127 PLDMRMDPSRGISAAEFVNTAPVEEIARVFKEYGEERFSGRMARAVVERRDVTPFERTAD 186 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ ++ K + +PATR+FQ LRI VNNE+ +L GL +A + L+ GG L+V+SF Sbjct: 187 LAEVL-KVANPAWEKGKNPATRAFQGLRIQVNNELGDLEAGLEAALECLEVGGRLVVISF 245 Query: 251 HSLEDRLVKKFF-------ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 HSLEDR+VK F A + + VRH+ P + + K + ++ N Sbjct: 246 HSLEDRIVKLFMRKLVKGEADNLPRNLPVRHVA---FEPKI--KVHGKAQTASDAELKAN 300 Query: 304 RRSRSAKLR 312 RSRSA +R Sbjct: 301 PRSRSAVMR 309 >gi|156973213|ref|YP_001444120.1| S-adenosyl-methyltransferase MraW [Vibrio harveyi ATCC BAA-1116] gi|263504515|sp|A7MWK7|RSMH_VIBHB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|156524807|gb|ABU69893.1| hypothetical protein VIBHAR_00894 [Vibrio harveyi ATCC BAA-1116] Length = 316 Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 126/309 (40%), Positives = 175/309 (56%), Gaps = 20/309 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H+ VLL + I L P + +D TFG GG+SR+ K+G N + ++DRDP A++ E Sbjct: 7 HISVLLNESIDGLAIKPDGIYIDGTFGRGGHSRTILSKLGENGRLYSIDRDPQAIA---E 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F++ FS + Y + G VDGV+ DLGVSS Q+D +RGFSF K GP Sbjct: 64 AAKIDDPRFTIIHGPFSGMAKYAEEYGLVGKVDGVLLDLGVSSPQLDDAERGFSFMKDGP 123 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ---SAPFQTT 188 LDMRM SGI S + +A++ D+T ++ GE+K A RIA AIV R+ + P T Sbjct: 124 LDMRMDPTSGIPVSQWLMEADLDDITWVIREFGEDKHARRIAKAIVAYREDEENEPMVRT 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ LI S + HPATR+FQA RI++N+E+EE+ L+ A L G L V+ Sbjct: 184 GQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAASILAPEGRLSVI 243 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSN-----AHPAVFQSITKKVVVPTQEDVAFN 303 SFHSLEDR+VK+F S K V H IP A + K PT++++ N Sbjct: 244 SFHSLEDRMVKRFIRKES-KGPEVPHGIPMTEEQIRALGSANMKPIGKANKPTKQEIDMN 302 Query: 304 RRSRSAKLR 312 RSRS+ LR Sbjct: 303 PRSRSSVLR 311 >gi|256379773|ref|YP_003103433.1| S-adenosyl-methyltransferase MraW [Actinosynnema mirum DSM 43827] gi|255924076|gb|ACU39587.1| S-adenosyl-methyltransferase MraW [Actinosynnema mirum DSM 43827] Length = 316 Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 117/308 (37%), Positives = 175/308 (56%), Gaps = 8/308 (2%) Query: 20 HVPVLLEKVIALLNPA-PGK---VILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73 HVPVLL++V+ LL PA G+ V +D T G GG+S + K G +I LDRDP A++ Sbjct: 7 HVPVLLDRVLGLLAPALAGRDDAVFVDCTLGLGGHSEAVLKAHPGVRLIGLDRDPQAIAL 66 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + + ++ Q T+ + + V + VDG++ DLGVSS+Q+D +RGF++ + PL Sbjct: 67 AKARLAPFADRVEFVQTTYDGIAEAVDGRRVDGILMDLGVSSLQLDARERGFAYSQDAPL 126 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRMS SG +A+DV+N +L R+L GEE+ A +IA A+V+ R PF T+ L Sbjct: 127 DMRMSAGSGETAADVLNTYPAAELARVLRDYGEERFARKIAAAVVRERAKEPFTTSGRLV 186 Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 L+ +V ++ HPA R+FQALRI VN E+E L L +A L GG ++V S+ Sbjct: 187 ELLYASVPAATRRTGGHPAKRTFQALRIEVNRELESLRAALPAALSVLAVGGRIVVESYQ 246 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+VK+ A + V + H +T+ V + ++ N R+ +L Sbjct: 247 SLEDRMVKRALADLAASRTPVGLPVELPGHGPELTLLTRGAEVANESEIEDNPRAAPVRL 306 Query: 312 RAGMRTVE 319 RA R E Sbjct: 307 RAAERIRE 314 >gi|269104116|ref|ZP_06156813.1| S-adenosyl-methyltransferase MraW [Photobacterium damselae subsp. damselae CIP 102761] gi|268164014|gb|EEZ42510.1| S-adenosyl-methyltransferase MraW [Photobacterium damselae subsp. damselae CIP 102761] Length = 315 Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 122/314 (38%), Positives = 184/314 (58%), Gaps = 21/314 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQ 75 +HV VLL + + L P + +D TFG GG+SR K+G N + ++DRDP A++ Q Sbjct: 6 EHVSVLLHESVDGLAIKPDGIYIDGTFGRGGHSRLILSKLGENGRLYSIDRDPQAIAEAQ 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +F++ FS ++ Y+ ++ VDG++ DLGVSS Q+D +RGFSF + G Sbjct: 66 KI---DDPRFNIIHGPFSGMEKYMEERDLIGRVDGILLDLGVSSPQLDDAERGFSFMRDG 122 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---PFQT 187 PLDMRM SG +AS+ + A+ D+ +L GEE+ A RIA IV+ R+ P Sbjct: 123 PLDMRMDPTSGQAASEWLATADASDIAWVLKEFGEERFAKRIARGIVEHREDPEKEPLTR 182 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T L++LI + F K+ HPATRSFQA+RI++N+E++E+A L A L GG L V Sbjct: 183 TLQLANLIAQVSPF-KDKHKHPATRSFQAIRIYINSELDEIATALNGAVNILAPGGRLSV 241 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSN-----AHPAVFQSITKKVVVPTQEDVAF 302 +SFHSLEDR+VK+F ++S K + +P A + + K + P+Q ++ + Sbjct: 242 ISFHSLEDRMVKRFMRNKS-KGPEIPAGLPLTEEQIKALGSADLKLASKAIKPSQNELGY 300 Query: 303 NRRSRSAKLRAGMR 316 N R+RS+ LR R Sbjct: 301 NARARSSVLRLAER 314 >gi|238752424|ref|ZP_04613901.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia rohdei ATCC 43380] gi|238709357|gb|EEQ01598.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia rohdei ATCC 43380] Length = 320 Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 125/313 (39%), Positives = 183/313 (58%), Gaps = 19/313 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + LN + +D TFG GG+SR ++G +IA+DRDP AV + Sbjct: 14 HTSVLLDEAVNGLNIRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDRDPLAVEAAKS 73 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +FS+ FS+L YV + +DGV+ DLGVSS Q+D +RGFSF + GP Sbjct: 74 IT---DPRFSIVHGPFSELAHYVRELDLVGRIDGVLLDLGVSSPQLDDPERGFSFMRDGP 130 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G+SA+D + +A+ +D+ +L GEE+ A R+A AIV+R + P T++L Sbjct: 131 LDMRMDPTRGLSAADWLMKASAEDIAWVLKTFGEERFAKRLARAIVERNLTQPMTRTKEL 190 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI F ++ HPATRSFQA+RI++N+E+EE+ + L A + L G L V+SFH Sbjct: 191 ADLIANASPFRDKHK-HPATRSFQAIRIYINSELEEIERALDGALEVLAPEGRLSVISFH 249 Query: 252 SLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306 SLEDR+VK F SR +V A + + +S+ K ++P +VA N R+ Sbjct: 250 SLEDRIVKNFIRHHSRGPQVPAGLPLTEAQLRSMGGRTLKSVGK--MMPPDAEVAENPRA 307 Query: 307 RSAKLRAGMRTVE 319 RS+ LR R E Sbjct: 308 RSSVLRFAERIKE 320 >gi|311742808|ref|ZP_07716616.1| S-adenosyl-methyltransferase MraW [Aeromicrobium marinum DSM 15272] gi|311313488|gb|EFQ83397.1| S-adenosyl-methyltransferase MraW [Aeromicrobium marinum DSM 15272] Length = 325 Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 120/313 (38%), Positives = 187/313 (59%), Gaps = 16/313 (5%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVIL-----DATFGAGGYSRSFCKMGSN--VIALDRD 67 HT HVPV L++V+ LL PA D T G GG++ + + + V+ +DRD Sbjct: 9 HTRPSHVPVALDRVLDLLAPAVEAAGEAAVVVDTTLGLGGHTAAMLQRFPDLRVVGIDRD 68 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRG 124 P A+ E + D + +L A + ++ D + + GV DGV+FDLGVSSMQ+D G+RG Sbjct: 69 PDALRLAAERLADVAGRVTLVHAVYDRIADALDEAGVERVDGVLFDLGVSSMQLDVGERG 128 Query: 125 FSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 F++ + PLDMRM +GI+A++V+N DL R+L GEEK A RIA A+V R Sbjct: 129 FAYAQDAPLDMRMDPTTGITAAEVLNTYAAGDLARVLRTYGEEKFARRIADAVVAERDEH 188 Query: 184 PFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 PF T+ L L+++++ ++ +PA R+FQALRI VN+E+ + L +A AL+ G Sbjct: 189 PFDTSPRLVDLVRRSIPAAARRTGGNPAKRTFQALRIEVNDELGAYERALPAALSALRPG 248 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDV 300 G ++V+++HSLEDR+ K+ FA R R + +P+ H A F+S+T+ + + ++ Sbjct: 249 GRVVVLAYHSLEDRITKRTFA-RITTTQVPRDLPFVPAG-HAAEFRSLTRGAELASPAEI 306 Query: 301 AFNRRSRSAKLRA 313 N R++S +LRA Sbjct: 307 DENPRAQSVRLRA 319 >gi|165975468|ref|YP_001651061.1| S-adenosyl-methyltransferase MraW [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|263446591|sp|B0BRG9|RSMH_ACTPJ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|165875569|gb|ABY68617.1| S-adenosyl-methyltransferase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 313 Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 124/313 (39%), Positives = 181/313 (57%), Gaps = 18/313 (5%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPF 69 ++ T+ H+ VLL + + L P + +D TFG GG+SR S +IA DRDP Sbjct: 1 MNDTVHKHITVLLHEAVDGLAIKPNGIYIDGTFGRGGHSRLILSKLSEQGRLIATDRDPR 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGF 125 A++ T+ D + F + FS + D G +DG++ DLGVSS Q+D +RGF Sbjct: 61 AIAEAN-TIDDTR--FQIVHTAFSAIPDVCEQLGLTGKIDGILLDLGVSSPQLDDAERGF 117 Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF + GPLDMRM + G+SA++ + Q + DL +L GEE+ A RIA A+V +S Sbjct: 118 SFMRDGPLDMRMDTTKGLSAAEWLAQVSADDLAWVLKTFGEERFAKRIAQAVVSYNKSVT 177 Query: 185 --FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 T L+ +I V F K+ HPATRSFQA+RIF+N+E++EL + L+SA L Sbjct: 178 DKISRTLQLAQIIADAVPF-KDKHKHPATRSFQAIRIFINSELDELEKALQSALSVLAPE 236 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP---SNAHPAVFQSITKKVVVPTQED 299 G L ++SFHSLEDR+VK+F ++ K M V +P S + + I K ++P++ + Sbjct: 237 GRLSIISFHSLEDRMVKQFM-KKNSKGMDVPKGLPILESELNKNIPLKIIGKAIMPSEAE 295 Query: 300 VAFNRRSRSAKLR 312 + N RSRSA LR Sbjct: 296 IEANPRSRSAVLR 308 >gi|78221625|ref|YP_383372.1| S-adenosyl-methyltransferase MraW [Geobacter metallireducens GS-15] gi|123572785|sp|Q39YM7|RSMH_GEOMG RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|78192880|gb|ABB30647.1| methyltransferase [Geobacter metallireducens GS-15] Length = 313 Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 120/306 (39%), Positives = 182/306 (59%), Gaps = 14/306 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+ V+ +V+ALL+P PG V +D T G G++R + S ++ DRDP A++ + Sbjct: 6 HLSVMPAEVLALLSPRPGGVYVDGTLGGAGHARMILEASSPDGVLVGFDRDPEALAAASK 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + ++ L ++ F+ + + + G+D G + DLGVSS Q+D +RGFSFQ PL Sbjct: 66 RIASFGDRVRLVRSNFAAMDESLATLGIDTIDGFLLDLGVSSHQLDTAERGFSFQVDAPL 125 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK-RRQSAPFQTTQDL 191 DMRM +G +A+D+VN+ + +L RI+ GEE+ A RIA +VK R Q P ++T L Sbjct: 126 DMRMDPETGETAADLVNELSADELARIIREYGEERWAKRIASFVVKAREQHGPIESTLQL 185 Query: 192 SSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 ++ + + RIHPATR+FQALRI VN+E+ L +GL + + L GG +V+SF Sbjct: 186 VDCVKGAIPRAAWEERIHPATRTFQALRIAVNDELGSLERGLVAGIERLAPGGRGVVISF 245 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIP---SNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 HSLEDR+VK F R + M+P P V + +T K V+ ++VA N R+R Sbjct: 246 HSLEDRIVKTVF-RRYAQGCTCPKMLPRCVCGNKPRV-RILTGKPVMAGGDEVATNPRAR 303 Query: 308 SAKLRA 313 SAK+RA Sbjct: 304 SAKVRA 309 >gi|28897226|ref|NP_796831.1| S-adenosyl-methyltransferase MraW [Vibrio parahaemolyticus RIMD 2210633] gi|153839039|ref|ZP_01991706.1| S-adenosyl-methyltransferase MraW [Vibrio parahaemolyticus AQ3810] gi|260366064|ref|ZP_05778530.1| S-adenosyl-methyltransferase MraW [Vibrio parahaemolyticus K5030] gi|260878319|ref|ZP_05890674.1| S-adenosyl-methyltransferase MraW [Vibrio parahaemolyticus AN-5034] gi|260896408|ref|ZP_05904904.1| S-adenosyl-methyltransferase MraW [Vibrio parahaemolyticus Peru-466] gi|260899187|ref|ZP_05907582.1| S-adenosyl-methyltransferase MraW [Vibrio parahaemolyticus AQ4037] gi|33301414|sp|Q9AJH1|RSMH_VIBPA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|13537263|dbj|BAB40616.1| hypothetical protein [Vibrio parahaemolyticus] gi|28805435|dbj|BAC58715.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi|149747467|gb|EDM58415.1| S-adenosyl-methyltransferase MraW [Vibrio parahaemolyticus AQ3810] gi|308087564|gb|EFO37259.1| S-adenosyl-methyltransferase MraW [Vibrio parahaemolyticus Peru-466] gi|308093183|gb|EFO42878.1| S-adenosyl-methyltransferase MraW [Vibrio parahaemolyticus AN-5034] gi|308107133|gb|EFO44673.1| S-adenosyl-methyltransferase MraW [Vibrio parahaemolyticus AQ4037] gi|308111365|gb|EFO48905.1| S-adenosyl-methyltransferase MraW [Vibrio parahaemolyticus K5030] Length = 316 Score = 200 bits (509), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 126/309 (40%), Positives = 179/309 (57%), Gaps = 20/309 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H+ VLL + I L P + +D TFG GG+SR+ K+G N + ++DRDP A++ E Sbjct: 7 HISVLLNESIDGLAIKPDGIYIDGTFGRGGHSRTILSKLGPNGRLYSIDRDPQAIA---E 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F++ FS + Y + VDGV+ DLGVSS Q+D +RGFSF K GP Sbjct: 64 AGKIDDPRFTIIHGPFSGMAQYAEEYDLVGKVDGVLLDLGVSSPQLDDAERGFSFMKDGP 123 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---PFQTT 188 LDMRM SGI S + +A++ D+T ++ GE+K A RIA AIV+ R++ P T Sbjct: 124 LDMRMDPTSGIPVSQWLMEADLDDITWVIREFGEDKHARRIARAIVEYRENEENEPMVRT 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ LI + S + HPATR+FQA RI++N+E+EE+ L+ A + L G L V+ Sbjct: 184 GQLAKLISEAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAARILAPEGRLSVI 243 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSITKKVV----VPTQEDVAFN 303 SFHSLEDR+VK+F S K V H IP + A S K V P+++++ N Sbjct: 244 SFHSLEDRMVKRFIRKES-KGPEVPHGIPLTEAQIKELGSANMKTVGKAIKPSKQEIDMN 302 Query: 304 RRSRSAKLR 312 RSRS+ LR Sbjct: 303 PRSRSSVLR 311 >gi|317154466|ref|YP_004122514.1| S-adenosyl-methyltransferase MraW [Desulfovibrio aespoeensis Aspo-2] gi|316944717|gb|ADU63768.1| S-adenosyl-methyltransferase MraW [Desulfovibrio aespoeensis Aspo-2] Length = 325 Score = 200 bits (509), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 124/309 (40%), Positives = 174/309 (56%), Gaps = 14/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQE 76 H VLL +VI L P PG LD T G GG+S + + G+ + LDRD A++ E Sbjct: 11 HTTVLLHEVIEWLRPKPGGRYLDGTLGMGGHSHALLERAGQGAELAGLDRDAQALALAGE 70 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + ++ LF+ FS+ ++ + G VDG V DLGVSS+Q+D +RGFSF GPL Sbjct: 71 RLAGMGDRAHLFRLPFSRFEEALDALGWETVDGAVLDLGVSSLQLDEAERGFSFLSDGPL 130 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM G SA+D+VN DL RI+ GE+ A +IA AI++ R T L+ Sbjct: 131 DMRMDPDCGPSAADLVNTLKHGDLARIIRTWGEDPLAGKIASAILRARDKEAIMRTLRLA 190 Query: 193 SLIQKTVYFSK---NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 ++ + Y K R HPATR+FQ LRI VN E EEL L++ L G L ++S Sbjct: 191 EIV-RLAYPPKMRHTARNHPATRTFQGLRIAVNREAEELEHYLQAIVGRLAPGARLAIIS 249 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 FHSLEDR VK+ F + + H + N P++ + +T+K ++P+ +++A N RSR Sbjct: 250 FHSLEDRAVKRAFLADAKGCHCPPHQMHCTCNGVPSL-KVLTRKPLIPSDDEMARNPRSR 308 Query: 308 SAKLRAGMR 316 SAKLR R Sbjct: 309 SAKLRVAER 317 >gi|238797714|ref|ZP_04641209.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia mollaretii ATCC 43969] gi|238718466|gb|EEQ10287.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia mollaretii ATCC 43969] Length = 320 Score = 200 bits (508), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 122/311 (39%), Positives = 179/311 (57%), Gaps = 15/311 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + LN + +D TFG GG+SR ++G +IA+DRDP A+ + Sbjct: 14 HTSVLLDEAVNGLNIRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDRDPQAIEAAKS 73 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +FS+ FS+L YV + +DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 74 IT---DPRFSIVHGPFSELAHYVRELDLVGRIDGILLDLGVSSPQLDDPERGFSFMRDGP 130 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G+SA++ + +A+ D+ +L GEE+ A R+A AIV+R + P T++L Sbjct: 131 LDMRMDPSRGLSAAEWLMKASADDIAWVLKTFGEERFAKRLAKAIVERNLTQPMTRTKEL 190 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI F + ++ HPATRSFQA+RI++N+E+EE+ + L A + L G L V+SFH Sbjct: 191 ADLIANASPFREKHK-HPATRSFQAIRIYINSELEEIERALDGAHEVLAPEGRLSVISFH 249 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNRRSRS 308 SLEDR+VK F RS + + A T K + +P +VA N R+RS Sbjct: 250 SLEDRIVKNFIRQRSRGPQVPAGLPLTEAQLRSMGGRTMKSIGKMMPADAEVAENPRARS 309 Query: 309 AKLRAGMRTVE 319 + LR R E Sbjct: 310 SVLRFAERIKE 320 >gi|261345652|ref|ZP_05973296.1| S-adenosyl-methyltransferase MraW [Providencia rustigianii DSM 4541] gi|282566134|gb|EFB71669.1| S-adenosyl-methyltransferase MraW [Providencia rustigianii DSM 4541] Length = 317 Score = 200 bits (508), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 129/317 (40%), Positives = 179/317 (56%), Gaps = 24/317 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 HV VLL++ + LN P + +D TFG GG+SR ++G N +IA+DRDP A+ QE Sbjct: 8 HVTVLLDEAVNGLNLKPNGIYIDGTFGRGGHSRLILSQLGENGRLIAIDRDPEAIKAAQE 67 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +F + FS + DY ++G +DGV+ DLGVSS Q+D +RGFSF + GP Sbjct: 68 I---DDPRFMIKHGPFSAIADYAEEEGLVGKIDGVLLDLGVSSPQLDDAERGFSFMRDGP 124 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR---QSAPFQTT 188 LDMRM + G SA+ + A D+ +L GEE+ A RIA AIV+R + P T Sbjct: 125 LDMRMDPTHGQSAAQWLMTAEADDIAWVLKTFGEERFAKRIARAIVERNHNPEEEPLTRT 184 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 + L+ LI K V K+ HPATRSFQA+RI++N+E+EE+ + L A L G L V+ Sbjct: 185 RHLAELIAK-VSPMKDRHKHPATRSFQAIRIYINSELEEIEKALNGAMSVLAPEGRLSVI 243 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIP------SNAHPAVFQSITKKVVVPTQEDVAF 302 SFHSLEDRLVK+F S +V IP A + + K + P+ ++ Sbjct: 244 SFHSLEDRLVKRFIRQHSSGP-SVPPGIPLTEAQIKELGAAKLRGLGK--MKPSDSEIDE 300 Query: 303 NRRSRSAKLRAGMRTVE 319 N R+RS+ LR R E Sbjct: 301 NPRARSSVLRFAERAPE 317 >gi|73542671|ref|YP_297191.1| S-adenosyl-methyltransferase MraW [Ralstonia eutropha JMP134] gi|88909215|sp|Q46WY6|RSMH_RALEJ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|72120084|gb|AAZ62347.1| methyltransferase [Ralstonia eutropha JMP134] Length = 332 Score = 200 bits (508), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 125/315 (39%), Positives = 191/315 (60%), Gaps = 35/315 (11%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + L P V +D TFG GG+SR+ ++G + ++A D+DP A++ Sbjct: 14 HRTVLLDEAVEALVWRPDGVYVDGTFGRGGHSRAVLARLGPDGALVAFDKDPAAIAEAG- 72 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 T++D + FS+ +F+ + + + +G V GV+ DLG+SS QID RGFSF+ GPLDM Sbjct: 73 TIQDAR--FSIEHESFAAMGERLAGRGHVAGVLLDLGISSPQIDEAARGFSFRFEGPLDM 130 Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ----SAPFQTTQD 190 RM + GI+A++ + QA +D+ R++ GEE+ A +IA AIV RR+ P TT D Sbjct: 131 RMDTTRGITAAEWLAQAEEQDIARVIRDYGEERFAVQIAKAIVARRREPGDGGPLATTAD 190 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L++L+ K V + + PATR+FQALRI +N E+E+L +GL++A L+ GG L+V+SF Sbjct: 191 LAALVAKAVKTREKGQ-DPATRTFQALRIHINQELEDLERGLKAAYDLLQVGGRLVVISF 249 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSITKKV------------VVPTQ 297 HSLEDR+VK+F A+ H P +A PA+ ++ + V P Sbjct: 250 HSLEDRIVKRFMAA---------HARPQQDADPALRRAPLRAADLPQPTLRLLGRVKPGA 300 Query: 298 EDVAFNRRSRSAKLR 312 ++VA N R+RSA +R Sbjct: 301 QEVADNPRARSAVMR 315 >gi|303232694|ref|ZP_07319379.1| S-adenosyl-methyltransferase MraW [Atopobium vaginae PB189-T1-4] gi|302481180|gb|EFL44255.1| S-adenosyl-methyltransferase MraW [Atopobium vaginae PB189-T1-4] Length = 316 Score = 200 bits (508), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 120/305 (39%), Positives = 179/305 (58%), Gaps = 12/305 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF----CKMGSNVIALDRDPFAVSCGQ 75 H+PV+L++ +A LNP PG+++ D T GA G++ + C G ++ D + Q Sbjct: 7 HIPVMLQETLAYLNPKPGEIVCDCTLGAAGHTVALAERICPDGLSIGIDQDDAAIAAATQ 66 Query: 76 ETMRDYKE-QFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 R Q+ Q FSQ+ + + GVD V+FDLGVSS Q+D RGFS+ ++ Sbjct: 67 HITRACPTAQYRFLQGNFSQIDELLLKAEVVGVDCVLFDLGVSSPQLDIPSRGFSYHENA 126 Query: 132 PLDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM + ++A++V+N N DLTRIL + G+EK A +IA IVK RQ+ +TT Sbjct: 127 PLDMRMDPRNNTLNAAEVINTYNEADLTRILRVFGDEKFAPQIARRIVKERQTKAIETTF 186 Query: 190 DLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I+ ++ ++ + HPA ++FQA+RI VN+E++ L GL A L GG + V+ Sbjct: 187 ELVDIIKASIPAAARRHAKHPARKTFQAIRIEVNHELDVLQVGLERAIAWLNTGGRMCVI 246 Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 S+HSLEDRLVK FA + G V V + + ITKK + + E+VA N R+R Sbjct: 247 SYHSLEDRLVKHVFAQYARGCVCPVDLPVCVCHKKPIIDVITKKPLYASDEEVARNPRAR 306 Query: 308 SAKLR 312 SA +R Sbjct: 307 SACMR 311 >gi|331696613|ref|YP_004332852.1| ribosomal RNA small subunit methyltransferase H [Pseudonocardia dioxanivorans CB1190] gi|326951302|gb|AEA24999.1| Ribosomal RNA small subunit methyltransferase H [Pseudonocardia dioxanivorans CB1190] Length = 326 Score = 200 bits (508), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 121/310 (39%), Positives = 179/310 (57%), Gaps = 10/310 (3%) Query: 20 HVPVLLEKVIALLNPA-PGK--VILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 HVPVLL +V+ LL PA G+ V++DAT G GG+S + ++ LDRDP A+ Sbjct: 15 HVPVLLPRVLELLGPALAGRPAVVVDATLGLGGHSAALLAAHPELTLVGLDRDPQALELA 74 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + ++ L A + ++ D + + G DGV+FDLGVSS+Q+D +RGFS+ + Sbjct: 75 GRRLVAFADRTHLVHAVYDRIADVLAELGLPGADGVLFDLGVSSLQLDADERGFSYSRDA 134 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM +G +A+DV+N V +L RIL GEE+ A RIA AI + R PF + + Sbjct: 135 DLDMRMDPTTGPTAADVLNTYAVPELARILREYGEERFAGRIAAAIGRARDRRPFTRSSE 194 Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L L+ +TV S+ HPA R+FQALRI VN E++ L + +A +L GG ++V+S Sbjct: 195 LVELLYETVPAASRRTGGHPAKRTFQALRIEVNGELDALRAAVPAAIDSLTVGGRIVVLS 254 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 +HSLEDRLVK+ A+RS + H + + + ++E+V N R+ S Sbjct: 255 YHSLEDRLVKRELAARSVSTTPQDLPVELPGHGPELRLLVRGSQQASEEEVGENPRAASV 314 Query: 310 KLRAGMRTVE 319 +LRA R E Sbjct: 315 RLRAAERIRE 324 >gi|261211507|ref|ZP_05925795.1| S-adenosyl-methyltransferase MraW [Vibrio sp. RC341] gi|262404723|ref|ZP_06081278.1| S-adenosyl-methyltransferase MraW [Vibrio sp. RC586] gi|260839462|gb|EEX66088.1| S-adenosyl-methyltransferase MraW [Vibrio sp. RC341] gi|262349755|gb|EEY98893.1| S-adenosyl-methyltransferase MraW [Vibrio sp. RC586] Length = 316 Score = 200 bits (508), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 124/309 (40%), Positives = 176/309 (56%), Gaps = 20/309 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H+ VLL + I L P + +D TFG GG+SR+ ++G + ++DRDP A++ Q+ Sbjct: 7 HISVLLNESIEGLAIKPDGIYIDGTFGRGGHSRTILAQLGPQGRLYSIDRDPQAIAEAQK 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +F++ FS + +Y VDGV+FDLGVSS Q+D +RGFSF K GP Sbjct: 67 I---DDPRFTIVHGPFSGIAEYAQRYDLVGKVDGVLFDLGVSSPQLDDAERGFSFMKDGP 123 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---PFQTT 188 LDMRM SG+ S+ + QA++ D+T ++ GE+K A RIA AIV+ R++ P T Sbjct: 124 LDMRMDPTSGMPVSEWLAQADLDDITWVIREFGEDKHARRIAKAIVEYRENELNEPLTRT 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ LI S + HPATR+FQA RI++N+E+EE+ LR A L G L V+ Sbjct: 184 SQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALRGASDILAPQGRLSVI 243 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSN-----AHPAVFQSITKKVVVPTQEDVAFN 303 SFHSLEDR+VK+F S + V H IP A + K + P+ ++V N Sbjct: 244 SFHSLEDRMVKRFMRKES-QGPQVPHGIPLTQDQIRALGSAKMKTVGKALKPSDQEVELN 302 Query: 304 RRSRSAKLR 312 RSRS+ LR Sbjct: 303 PRSRSSVLR 311 >gi|119717295|ref|YP_924260.1| S-adenosyl-methyltransferase MraW [Nocardioides sp. JS614] gi|262824666|sp|A1SL88|RSMH_NOCSJ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|119537956|gb|ABL82573.1| S-adenosyl-methyltransferase MraW [Nocardioides sp. JS614] Length = 319 Score = 200 bits (508), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 121/309 (39%), Positives = 182/309 (58%), Gaps = 12/309 (3%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74 HVPVLL++V+ALL P G V++DAT G GG++ + + V+ +DRDP A++ Sbjct: 6 HVPVLLDRVVALLAPPLEREGSVLVDATLGLGGHTEAVLTRFDLARVVGIDRDPEALALA 65 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + ++F+ A + +L D + G VD V+FDLGVSSMQ+D +RGF++ + Sbjct: 66 GRRLAPFGDRFTGVHAVYDELPDVLARLGLDAVDAVLFDLGVSSMQLDVRERGFAYAEDA 125 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S G +A+DV+N DL RIL GEE+ A +IA A+V+ R PF + Sbjct: 126 PLDMRMDGSTGPTAADVLNTYAAADLARILREYGEERFARKIAAAVVRERAKEPFTRSGR 185 Query: 191 LSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L L+ + ++ HPA R+FQALR+ VN+E+ L + + +A A+ GG ++V S Sbjct: 186 LVELLYAEIPAPARRTGGHPAKRTFQALRMEVNDELAVLRRAIPAAIDAIGVGGRVVVES 245 Query: 250 FHSLEDRLVKK-FFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 +HSLEDRLVK+ F A+ V +P+ PA + +T+ E++A N R+ S Sbjct: 246 YHSLEDRLVKQAFVAASRLDVPEDLPFVPAGHEPA-LRLVTRGAEKAGPEEIALNPRAAS 304 Query: 309 AKLRAGMRT 317 +LRA RT Sbjct: 305 VRLRAIERT 313 >gi|41396357|gb|AAS04222.1| hypothetical protein MAP_1905c [Mycobacterium avium subsp. paratuberculosis K-10] Length = 386 Score = 200 bits (508), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 122/316 (38%), Positives = 181/316 (57%), Gaps = 18/316 (5%) Query: 20 HVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPF 69 HVPVLLE+ + LL PA G V+LDAT GAGG++ F G +IALDRDP Sbjct: 61 HVPVLLERCVELLTPALTRRHPDGSGAVLLDATLGAGGHAERFLADLPGLRLIALDRDPS 120 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQL------QDYVPDKGVDGVVFDLGVSSMQIDCGDR 123 A+ +E + + ++ +L + + Y + VDG++FDLGVSSMQ+D +R Sbjct: 121 ALEIARERLARFADRITLVHMRYDGIAAALTESGYAATESVDGILFDLGVSSMQLDRPER 180 Query: 124 GFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GF++ + PLDMRM S ++A+D++N + +L IL GEE+ A RIA IV+RR Sbjct: 181 GFAYAQDAPLDMRMDPGSPLTAADILNTYDEAELADILHRYGEERFARRIAAQIVRRRAK 240 Query: 183 APFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 PF +T DL SL+ + + ++ HPA R+FQALRI VN+E++ L + L +A AL Sbjct: 241 EPFTSTADLVSLLYQAIPAPARRTGGHPAKRTFQALRIAVNDELDTLRRALPAALDALAV 300 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 G ++V+++ SLEDR+VK+ FA V + H F+++T ++ Sbjct: 301 DGRIVVLAYQSLEDRIVKRLFAQAVASRTPVDLPVELPGHEPRFRALTHGAGRADAAEIE 360 Query: 302 FNRRSRSAKLRAGMRT 317 N RS + +LRA RT Sbjct: 361 RNPRSAAVRLRALQRT 376 >gi|59712816|ref|YP_205592.1| S-adenosyl-methyltransferase MraW [Vibrio fischeri ES114] gi|68565406|sp|Q5E2P2|RSMH_VIBF1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|59480917|gb|AAW86704.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Vibrio fischeri ES114] Length = 316 Score = 200 bits (508), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 127/313 (40%), Positives = 178/313 (56%), Gaps = 20/313 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 HV VLL + I L P + +D TFG GG+SR ++G N + ++DRDP A++ + Sbjct: 7 HVSVLLHESIDGLAIKPDGIYIDGTFGRGGHSRQILSQLGENGRLYSIDRDPQAIAEAK- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 T+ D K F++ FS L+ YV + +DGV+ DLGVSS Q+D +RGFSF K GP Sbjct: 66 TITDPK--FTIIHGPFSGLKQYVEELDLVGKIDGVLLDLGVSSPQLDDAERGFSFMKDGP 123 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV---KRRQSAPFQTT 188 LDMRM SGI S + +A+V+D+T ++ GE+K A RIA IV + ++ P T Sbjct: 124 LDMRMDPTSGIPVSQWLQEADVEDITWVIREFGEDKHAWRIAKGIVAYLENEENEPLTRT 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ LI + S + HPATR+FQA RI++N+E++E+ L+ A L G L V+ Sbjct: 184 SQLAKLISEVAPKSFKEKKHPATRAFQAFRIYINSELDEIDTALKGALDVLAPEGRLSVI 243 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSN-----AHPAVFQSITKKVVVPTQEDVAFN 303 SFHSLEDR+VK F S K V H +P A + K + PT+ +V N Sbjct: 244 SFHSLEDRMVKHFIRKES-KGPQVPHGLPLTEEQIKALGSAKMKPVGKAIKPTKNEVNEN 302 Query: 304 RRSRSAKLRAGMR 316 RSRS+ LR R Sbjct: 303 VRSRSSVLRIAER 315 >gi|264680254|ref|YP_003280164.1| S-adenosyl-methyltransferase MraW [Comamonas testosteroni CNB-2] gi|262210770|gb|ACY34868.1| S-adenosyl-methyltransferase MraW [Comamonas testosteroni CNB-2] Length = 309 Score = 200 bits (508), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 132/307 (42%), Positives = 183/307 (59%), Gaps = 17/307 (5%) Query: 20 HVPVLL-EKVIALLNPA---PGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVS 72 H+ VLL E V ALL A P +DATFG GG+SR ++G + +IA D+DP A++ Sbjct: 7 HITVLLDEAVDALLGGAAKPPAGQWVDATFGRGGHSRLILQRLGPDGRLIAFDKDPDAIA 66 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E R +FS+ F L + +P+ V GV+ DLGVSS QID DRGFSF+ GP Sbjct: 67 ---EAARITDARFSIRHEGFRHLGE-LPEGSVQGVLMDLGVSSPQIDNPDRGFSFRFDGP 122 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQTTQD 190 LDMRM + G S ++ + A V+ + ++ GEE+ A IA AIV RR+S P +TT + Sbjct: 123 LDMRMDTTRGQSVAEWLEDAEVQQIAEVIRDYGEERFAGPIAKAIVARRESQGPLRTTAE 182 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ L+ V + + +PATR+FQALRIF+N E++EL Q L ++ + L GG L V+SF Sbjct: 183 LAQLVAGAVKTREAGQ-NPATRTFQALRIFINAELQELEQALEASLRVLAPGGRLAVISF 241 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDR+VK+F A S +V R A PA + + + P+ +V N RSRSA Sbjct: 242 HSLEDRIVKQFIAKHSKEVYDRRAPF---APPAPMRLKALERIKPSAAEVDANPRSRSAV 298 Query: 311 LRAGMRT 317 +R RT Sbjct: 299 MRVAERT 305 >gi|294101810|ref|YP_003553668.1| S-adenosyl-methyltransferase MraW [Aminobacterium colombiense DSM 12261] gi|293616790|gb|ADE56944.1| S-adenosyl-methyltransferase MraW [Aminobacterium colombiense DSM 12261] Length = 300 Score = 200 bits (508), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 118/307 (38%), Positives = 190/307 (61%), Gaps = 26/307 (8%) Query: 19 DHVPVLLEKVI-ALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQ 75 +H+PV+L++VI +L N ++I+DAT G GGY+ + + ++ +DRD A+S Q Sbjct: 3 EHIPVMLKEVIESLKNVESPQMIVDATLGLGGYAEEILNVFPATLLVGIDRDEQAISLAQ 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGV--DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + + E+ ++ + FS + + + DG+VFDLGVS++Q+ +RGFSFQ GPL Sbjct: 63 KRLVSFAERVHIYNSPFSAIAMVLSKENAEPDGIVFDLGVSNLQLSSPERGFSFQNDGPL 122 Query: 134 DMRMSC----SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK-RRQSAPFQTT 188 DMRM SG SA+ +VN + K+L I GEE+ + RIA IV+ R ++ P Q T Sbjct: 123 DMRMEGTSGESGYSAAQIVNTFSEKELADIFWKYGEERYSRRIATGIVRFREKNGPIQRT 182 Query: 189 QDLSSLIQKTVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 L I+ ++ ++ HPA + FQALRIFVN+E++EL +GL+ A ++L GG+++ Sbjct: 183 FQLVEAIRSSLPAPVQRKMGGHPARKVFQALRIFVNDELQELEKGLQGALESLAPGGVIV 242 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 VVS+HSLEDR+VK +A + K ++ H + +T++ + P++E+V N ++ Sbjct: 243 VVSYHSLEDRIVK--YAMKDWK---------TSDHGDL---LTRRPLKPSEEEVEKNYKA 288 Query: 307 RSAKLRA 313 RSAKLRA Sbjct: 289 RSAKLRA 295 >gi|297161278|gb|ADI10990.1| S-adenosyl-methyltransferase MraW [Streptomyces bingchenggensis BCW-1] Length = 320 Score = 200 bits (508), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 120/311 (38%), Positives = 181/311 (58%), Gaps = 12/311 (3%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74 HVPV+L++ + +L PA PG V++D T G GG+S + + + ++ALDRDP A+ Sbjct: 7 HVPVMLQRCLDMLAPALERPGAVVVDCTLGLGGHSEALLRTFPEARLVALDRDPAALELS 66 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y ++ +L A + +L + + G V G++FDLGVSSMQ+D +RGF++ + Sbjct: 67 GARLAPYGDRATLVHAVYDELPEVLARLGIPRVQGILFDLGVSSMQLDEAERGFAYAQDA 126 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM +GISA++V+N +L RIL GEEK A +I A+V+ R PF + Sbjct: 127 PLDMRMDQTTGISAAEVLNTYPPGELVRILRTYGEEKFARKIVDAVVRERAKEPFHNSAR 186 Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L LI+ + +K +PA R+FQALRI VN E+ L + + +A AL GG + V+S Sbjct: 187 LVELIRAALPQAAKRTGGNPAKRTFQALRIEVNGELTVLERAIPAAVAALAVGGRIAVLS 246 Query: 250 FHSLEDRLVKKFF-ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 +HSLEDRLVK A ++P P + +T+ +PT+E++A NRR+ Sbjct: 247 YHSLEDRLVKHVLGAGAETTAPPGLPVVPERYQPR-LKLLTRGAELPTEEEIAENRRAAP 305 Query: 309 AKLRAGMRTVE 319 A+LR R E Sbjct: 306 ARLRGAERIRE 316 >gi|161611203|ref|NP_960839.2| S-adenosyl-methyltransferase MraW [Mycobacterium avium subsp. paratuberculosis K-10] gi|88911700|sp|P62474|RSMH_MYCPA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 335 Score = 200 bits (508), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 122/316 (38%), Positives = 181/316 (57%), Gaps = 18/316 (5%) Query: 20 HVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPF 69 HVPVLLE+ + LL PA G V+LDAT GAGG++ F G +IALDRDP Sbjct: 10 HVPVLLERCVELLTPALTRRHPDGSGAVLLDATLGAGGHAERFLADLPGLRLIALDRDPS 69 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQL------QDYVPDKGVDGVVFDLGVSSMQIDCGDR 123 A+ +E + + ++ +L + + Y + VDG++FDLGVSSMQ+D +R Sbjct: 70 ALEIARERLARFADRITLVHMRYDGIAAALTESGYAATESVDGILFDLGVSSMQLDRPER 129 Query: 124 GFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GF++ + PLDMRM S ++A+D++N + +L IL GEE+ A RIA IV+RR Sbjct: 130 GFAYAQDAPLDMRMDPGSPLTAADILNTYDEAELADILHRYGEERFARRIAAQIVRRRAK 189 Query: 183 APFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 PF +T DL SL+ + + ++ HPA R+FQALRI VN+E++ L + L +A AL Sbjct: 190 EPFTSTADLVSLLYQAIPAPARRTGGHPAKRTFQALRIAVNDELDTLRRALPAALDALAV 249 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 G ++V+++ SLEDR+VK+ FA V + H F+++T ++ Sbjct: 250 DGRIVVLAYQSLEDRIVKRLFAQAVASRTPVDLPVELPGHEPRFRALTHGAGRADAAEIE 309 Query: 302 FNRRSRSAKLRAGMRT 317 N RS + +LRA RT Sbjct: 310 RNPRSAAVRLRALQRT 325 >gi|253988586|ref|YP_003039942.1| S-adenosyl-methyltransferase MraW [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780036|emb|CAQ83197.1| s-adenosyl-l-methionine-dependent methyltransferase [Photorhabdus asymbiotica] Length = 314 Score = 200 bits (508), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 127/313 (40%), Positives = 179/313 (57%), Gaps = 19/313 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76 H VLL++ + LN + +D TFG GG+SR S M +IA+DRDP A+ + Sbjct: 8 HTSVLLDEAVNGLNIRKDGIYIDGTFGRGGHSRLILSQLGMEGRLIAIDRDPQAIETAKS 67 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +FS+ FS+L YV + G +DGV+ DLGVSS Q+D +RGFSF + GP Sbjct: 68 IT---DPRFSIIHGPFSELAHYVENAGLTGKIDGVLLDLGVSSPQLDDPERGFSFMRDGP 124 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G SA++ + +A D+ +L GEE+ A RIA AIV R Q P T+ L Sbjct: 125 LDMRMDPTHGQSAAEWLMKAEADDIAWVLKTFGEERFAKRIAKAIVTRNQEEPITRTKVL 184 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI + + + HPATRSFQA+RI++N+E+EE+ Q L A + L G L V+SFH Sbjct: 185 ADLIAQASPVKEKYK-HPATRSFQAIRIYINSELEEIEQALDGALQVLAPRGRLSVISFH 243 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306 SLEDR+VK+F SR +V A + +SI K + P++ +VA N R+ Sbjct: 244 SLEDRIVKRFIRHNSRGPQVPAGLPLTEEQLKAQGGRSLKSIGK--MKPSENEVADNPRA 301 Query: 307 RSAKLRAGMRTVE 319 RS+ LR + E Sbjct: 302 RSSVLRFAEKVSE 314 >gi|261253815|ref|ZP_05946388.1| S-adenosyl-methyltransferase MraW [Vibrio orientalis CIP 102891] gi|260937206|gb|EEX93195.1| S-adenosyl-methyltransferase MraW [Vibrio orientalis CIP 102891] Length = 324 Score = 200 bits (508), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 127/315 (40%), Positives = 176/315 (55%), Gaps = 32/315 (10%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H+ VLL + I L P + +D TFG GG+SR+ K+G N + ++DRDP A++ E Sbjct: 15 HISVLLHESIDGLAIKPDGIYIDGTFGRGGHSRTILSKLGDNGRLYSIDRDPQAIA---E 71 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F++ FS + Y + VDGV+ DLGVSS Q+D +RGFSF K GP Sbjct: 72 AGKIDDPRFTIIHGPFSGMAQYAAEYDLVGKVDGVLLDLGVSSPQLDDAERGFSFMKDGP 131 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---PFQTT 188 LDMRM SGI S + +A++ D+T ++ GE+K A RIA AIV R++ P T Sbjct: 132 LDMRMDPTSGIPVSQWLMEADLDDITWVIREFGEDKHARRIAKAIVAYRENEENEPMTRT 191 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ LI S + HPATRSFQA RI++N+E+EE+ L+ A L G L V+ Sbjct: 192 GQLAKLISDAAPKSFKEKKHPATRSFQAFRIYINSELEEIDTALKGAASILAPEGRLSVI 251 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIP-----------SNAHPAVFQSITKKVVVPTQ 297 SFHSLEDR+VK+F S K V H IP +N P K + P++ Sbjct: 252 SFHSLEDRMVKRFIRKES-KGPEVPHGIPMTEDQIKALGSANLKP------VGKAIKPSK 304 Query: 298 EDVAFNRRSRSAKLR 312 ++V N RSRS+ LR Sbjct: 305 QEVEENTRSRSSVLR 319 >gi|304413635|ref|ZP_07395079.1| S-adenosyl-dependent methyltransferase [Candidatus Regiella insecticola LSR1] gi|304283726|gb|EFL92120.1| S-adenosyl-dependent methyltransferase [Candidatus Regiella insecticola LSR1] Length = 313 Score = 199 bits (507), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 122/308 (39%), Positives = 177/308 (57%), Gaps = 15/308 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H VLLE+ + LN + +D TFG GG+SR ++G +IA+DRDP AV + Sbjct: 7 HESVLLEQAVHCLNLRDDGIYVDGTFGLGGHSRLILSRLGQQGRLIAIDRDPQAVEVAKS 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +FS+ FS+L Y + +DGV+FDLGVSS Q+D RGFSF + GP Sbjct: 67 IT---DPRFSIIHGPFSELARYAQESDLIGRIDGVLFDLGVSSPQLDNPQRGFSFMRDGP 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G+SA+ + +A+ ++ +L GEE+ A R+A AIV+R Q P TQ+L Sbjct: 124 LDMRMDPSRGLSAAQWLMKASADEIAWVLKTFGEERFAKRLARAIVERNQQQPMHRTQEL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI + + ++ HPATRSFQA+RI++N+E+EE+ + L ++ L G + V+SFH Sbjct: 184 ADLIVNILPMREKHK-HPATRSFQAIRIYINSELEEITRALEASLSVLAPKGRISVISFH 242 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV---VVPTQEDVAFNRRSRS 308 SLEDR+VK F +S M + + K ++P+ E+VA N R+RS Sbjct: 243 SLEDRIVKNFIRQQSRGPQIPVGMPLTETQLRLMGGANLKTMGKMMPSAEEVAENPRARS 302 Query: 309 AKLRAGMR 316 A LR R Sbjct: 303 AVLRFAER 310 >gi|328471991|gb|EGF42868.1| 16S rRNA m(4)C1402 methyltranserfase [Vibrio parahaemolyticus 10329] Length = 316 Score = 199 bits (507), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 126/309 (40%), Positives = 178/309 (57%), Gaps = 20/309 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H+ VLL + I L P + +D TFG GG+SR+ K+G N + ++DRDP A++ E Sbjct: 7 HISVLLNESIDGLAIKPDGIYIDGTFGRGGHSRTILSKLGPNGRLYSIDRDPQAIA---E 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F++ FS + Y + VDGV+ DLGVSS Q+D +RGFSF K GP Sbjct: 64 AGKIDDPRFTIIHGPFSGMAQYAEEYDLVGKVDGVLLDLGVSSPQLDDAERGFSFMKDGP 123 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---PFQTT 188 LDMRM SGI S + +A++ D+T ++ GE+K A RIA AIV+ R++ P T Sbjct: 124 LDMRMDPTSGIPVSQWLMEADLDDITWVIREFGEDKHARRIARAIVEYRENEENEPMVRT 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ LI + S + HPATR+FQA RI++N+E+EE+ L+ A + L G L V+ Sbjct: 184 GQLAKLISEAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAARILAPEGRLSVI 243 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSITKKVV----VPTQEDVAFN 303 SFHSLEDR+VK+F S K V H IP + A S K V P++ ++ N Sbjct: 244 SFHSLEDRMVKRFIRKES-KGPEVPHGIPLTEAQIKELGSANMKTVGKAIKPSKHEIDMN 302 Query: 304 RRSRSAKLR 312 RSRS+ LR Sbjct: 303 PRSRSSVLR 311 >gi|307330443|ref|ZP_07609586.1| S-adenosyl-methyltransferase MraW [Streptomyces violaceusniger Tu 4113] gi|306883868|gb|EFN14911.1| S-adenosyl-methyltransferase MraW [Streptomyces violaceusniger Tu 4113] Length = 310 Score = 199 bits (507), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 117/307 (38%), Positives = 180/307 (58%), Gaps = 12/307 (3%) Query: 24 LLEKVIALLNPA---PGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQETM 78 +L++ + +L PA PG V++D T G GG+S + + + +IALDRDP A+ E + Sbjct: 1 MLQRCLDMLAPALAQPGAVVVDCTLGLGGHSEALLRDFPEARLIALDRDPSALRLAGERL 60 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 Y ++ +L A + +L + + GV G++FDLGVSSMQ+D +RGF++ + PLDM Sbjct: 61 APYGDRATLVHAVYDELPEVLDRLGVPRVQGILFDLGVSSMQLDEAERGFAYAQDAPLDM 120 Query: 136 RMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM +G+SA++V+N +L RIL GEEK A +I A+V+ R PF + L L Sbjct: 121 RMDQTTGVSAAEVLNTYPPGELVRILRAYGEEKFAKKIVDAVVRERAKEPFTNSARLVEL 180 Query: 195 IQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 I+ + +K +PA R+FQALRI VN E+ L + + +A L GG + V+S+HSL Sbjct: 181 IRAALPQAAKRTGGNPAKRTFQALRIEVNGELAVLERAIPAAVGTLAVGGRIAVLSYHSL 240 Query: 254 EDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 EDRLVK+ FA+ + +IP P + +T+ +PT+E++A NRR+ A+ R Sbjct: 241 EDRLVKQVFAAGARNTAPPGLPVIPEQYQPR-LKLLTRGAELPTEEEIAENRRAAPARFR 299 Query: 313 AGMRTVE 319 R E Sbjct: 300 GAERIRE 306 >gi|251788242|ref|YP_003002963.1| S-adenosyl-methyltransferase MraW [Dickeya zeae Ech1591] gi|263446384|sp|C6CJW6|RSMH_DICZE RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|247536863|gb|ACT05484.1| S-adenosyl-methyltransferase MraW [Dickeya zeae Ech1591] Length = 313 Score = 199 bits (507), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 127/311 (40%), Positives = 182/311 (58%), Gaps = 21/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76 H VLL++ + L+ + +D TFG GG+SR S ++A+DRDP AV Sbjct: 7 HTTVLLDEAVNGLSIRSNGIYIDGTFGRGGHSRLILSHLGPEGRLLAIDRDPQAVEVAN- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 T+ D + FS+ FS+L +YV +G +DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 66 TIDDAR--FSIIHGPFSELAEYVEARGLTGKIDGILLDLGVSSPQLDDPERGFSFMRDGP 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G SA+D + +A D+ +L GEE+ A RIA AIV+R + P T+ L Sbjct: 124 LDMRMDPTRGQSAADWLMKAEADDIAWVLKTFGEERFAKRIARAIVERNRIDPLTRTKAL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI + + HPATRSFQA+RI++N+E+EE+ + L A L GG L V+SFH Sbjct: 184 AELIAAASPIREKYK-HPATRSFQAIRIYINSELEEIERALDGALTVLAPGGRLSVISFH 242 Query: 252 SLEDRLVKKFFA--SRSGKVMA----VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 SLEDR+VK+F SR +V A + S P +S+ K ++P ++VA N R Sbjct: 243 SLEDRIVKRFIRQHSRGPQVPAGLPLTEAQLRSQGGP-TLKSVGK--MMPPDDEVADNPR 299 Query: 306 SRSAKLRAGMR 316 +RS+ LR R Sbjct: 300 ARSSVLRFAER 310 >gi|116750882|ref|YP_847569.1| S-adenosyl-methyltransferase MraW [Syntrophobacter fumaroxidans MPOB] gi|171460803|sp|A0LNY2|RSMH_SYNFM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|116699946|gb|ABK19134.1| S-adenosyl-methyltransferase MraW [Syntrophobacter fumaroxidans MPOB] Length = 319 Score = 199 bits (507), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 129/306 (42%), Positives = 182/306 (59%), Gaps = 13/306 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 +H+PV+LE+ + LL G V +D T G GGYS + + + ++ +D D A+ Sbjct: 8 EHIPVMLEQALELLACRRGGVYVDGTVGGGGYSEAILRASAPDGILLGVDWDAEAIGRAA 67 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + Y + L +A F++L + +P G VDG+V DLGVS+ QID RGFSF K GP Sbjct: 68 GRLSAYGRRAILTKAGFAELPEVLPRHGFAQVDGIVLDLGVSAFQIDDAARGFSFTKDGP 127 Query: 133 LDMRMSCSGI--SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM G+ +A+D+VN KDL ++ LGEE+ + RIA A+V+RR+ PFQ T + Sbjct: 128 LDMRMD-PGLPQTAADMVNTLPEKDLADLIFRLGEERWSRRIARAVVERRRERPFQRTLE 186 Query: 191 LSSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ + TV ++++R IHPATR+F ALR+ VN E+E L + L A LK GG L VVS Sbjct: 187 LADTVAATVPATRDSRRIHPATRTFLALRLAVNQELESLERFLSGALDLLKTGGRLCVVS 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 FHSLEDR+VK F + R + P V + +T+K V P + + N RSR Sbjct: 247 FHSLEDRMVKGQFKEWAKSCRCPREAVLCRCEGRPLV-RLLTRKAVRPDEREKERNPRSR 305 Query: 308 SAKLRA 313 SA+LRA Sbjct: 306 SARLRA 311 >gi|149377270|ref|ZP_01895017.1| S-adenosyl-methyltransferase MraW [Marinobacter algicola DG893] gi|149358458|gb|EDM46933.1| S-adenosyl-methyltransferase MraW [Marinobacter algicola DG893] Length = 326 Score = 199 bits (507), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 123/309 (39%), Positives = 181/309 (58%), Gaps = 11/309 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQE 76 H VLL+ + LL P V +D TFG GG+SR G ++ +D+DP A+ ++ Sbjct: 15 HRSVLLDSAVDLLVNDPDGVYVDGTFGRGGHSRLILGRLGQGGKLLGIDKDPDAIQVARD 74 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + +F F +F++L +G V+GV+ DLGVSS Q+D RGFSF + GPL Sbjct: 75 -LSASDARFQPFHGSFAELGAAAEAQGWMKVNGVLLDLGVSSPQLDDAARGFSFMRDGPL 133 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM SA+ + +A+ KD+ ++ GEEK + RIA +V+RR+ AP +TT+ L+ Sbjct: 134 DMRMDPGQAPSAAQWLAEADEKDIANVIWRYGEEKFSRRIARLVVERRKEAPLETTRQLA 193 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 SL+ + V K HPATR+FQA+RIF+N E+E+L GL +A + L GG L+V+SFHS Sbjct: 194 SLVSEAVP-KKEKHKHPATRTFQAIRIFINRELEDLELGLNAAVEKLMPGGRLVVISFHS 252 Query: 253 LEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDRLVK+F + G + + + + F+ I K T+E V+ N R+RSA + Sbjct: 253 LEDRLVKRFMRDLARGPRLPKGVPVTAEQEASAFRLIGKANKADTEE-VSDNVRARSAVM 311 Query: 312 RAGMRTVER 320 R R E+ Sbjct: 312 RVLERIPEQ 320 >gi|296166032|ref|ZP_06848481.1| S-adenosyl-methyltransferase MraW [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295898597|gb|EFG78154.1| S-adenosyl-methyltransferase MraW [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 334 Score = 199 bits (507), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 120/325 (36%), Positives = 182/325 (56%), Gaps = 18/325 (5%) Query: 20 HVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPF 69 HVPVLL + + LL PA G V+LDAT GAGG++ F G +I LDRDP Sbjct: 10 HVPVLLGRCVELLTPALTRHDADGSGAVLLDATLGAGGHAERFLTDLPGLRLIGLDRDPN 69 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSSMQIDCGDR 123 A+ + + + ++ +L + L + + G VDG++FDLGVSSMQ+D +R Sbjct: 70 ALEITRARLARFADRITLVHTRYDGLAAALAESGYGAIESVDGMLFDLGVSSMQLDRAER 129 Query: 124 GFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GF++ + PLDMRM S ++A+D++N + L IL GEE+ A RIA +V+RR Sbjct: 130 GFAYAQDAPLDMRMDPESPLTAADILNTYDEAALADILHRYGEERFARRIAAQVVRRRAR 189 Query: 183 APFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 APF +T DL +L+ + + ++ HPA R+FQALRI VN+E+ L + AL Sbjct: 190 APFASTADLVALLYQAIPAPARRTGGHPAKRTFQALRIAVNDELNSLRAATPAGLDALAV 249 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 GG ++V+++ SLEDR+VK+ FA+ V + H F+S+T ++V Sbjct: 250 GGRMVVLAYQSLEDRIVKRLFAAAVASRTPVDLPVELPGHEPRFRSLTHGAERADADEVE 309 Query: 302 FNRRSRSAKLRAGMRTVERSIEDDS 326 N RS + +LRA R + + + D+ Sbjct: 310 RNPRSAAVRLRAVQRVQQSTGKADA 334 >gi|327281892|ref|XP_003225679.1| PREDICTED: probable S-adenosyl-L-methionine-dependent methyltransferase METT5D1-like [Anolis carolinensis] Length = 395 Score = 199 bits (507), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 129/317 (40%), Positives = 177/317 (55%), Gaps = 38/317 (11%) Query: 38 KVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95 + ILD TFGAGG++++ + M + ALDRDP A Q Y +Q FSQL Sbjct: 78 ECILDMTFGAGGHTKALLQKEMDIKLYALDRDPTAYELAQRLSDSYTQQIQPLLGQFSQL 137 Query: 96 QDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI----SASD 146 + + GV DGV+ D G SSMQ+D +RGFS +K GPLDMRM +A+D Sbjct: 138 EALLTSAGVQPGNLDGVLLDAGCSSMQLDTPERGFSLRKDGPLDMRMDGDRYPDMPTAAD 197 Query: 147 VVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT-----VYF 201 VVN + + L IL + GEE+ A +IA AIV+ R P TQ L+S++ +Y Sbjct: 198 VVNALDQQALASILRMYGEERHAKKIALAIVQARSVYPITRTQQLASIVAGAFPDVALYA 257 Query: 202 SKN---NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258 K+ H AT++FQALRIFVNNE+ EL GL++AEK LK GG + +SFHSLEDR++ Sbjct: 258 RKDLLHRPTHVATKTFQALRIFVNNELHELYAGLQTAEKFLKPGGRFVALSFHSLEDRII 317 Query: 259 KKFFAS--RSGKV-MAVRHMIP---------------SNAHPAV-FQSITKKVVVPTQED 299 K+F S K ++VR I SN + + + +I KKV+ P +D Sbjct: 318 KRFLLGIDISEKFNLSVRQKIKQMGRDFSELEEEDEFSNGNVNLKWIAIQKKVLTPQAKD 377 Query: 300 VAFNRRSRSAKLRAGMR 316 + N R RSAKLR ++ Sbjct: 378 LQDNPRGRSAKLRGAIK 394 >gi|157368998|ref|YP_001476987.1| S-adenosyl-methyltransferase MraW [Serratia proteamaculans 568] gi|262826478|sp|A8G9R9|RSMH_SERP5 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|157320762|gb|ABV39859.1| S-adenosyl-methyltransferase MraW [Serratia proteamaculans 568] Length = 313 Score = 199 bits (507), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 129/311 (41%), Positives = 183/311 (58%), Gaps = 21/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMG--SNVIALDRDPFAVSCGQE 76 H VLL++ + LN +D TFG GG+SR ++G ++A+DRDP A++ + Sbjct: 7 HTTVLLDEAVNGLNIRSNGTYIDGTFGRGGHSRLILSQLGPEGRLLAIDRDPQAIAAAK- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 ++ D + FS+ FS L YV ++ +DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 66 SIEDPR--FSIVHGPFSDLSHYVRERELVGQIDGILLDLGVSSPQLDDAERGFSFMRDGP 123 Query: 133 LDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S SG SAS+ + +A D+ +L GEE+ A RIA AIV+R Q P T+ L Sbjct: 124 LDMRMDSSSGQSASEWLMKAEADDIAWVLKTFGEERFAKRIARAIVERNQVDPMTRTKQL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI F ++ HPATRSFQA+RI++N+E+EE+ + L A + L G L V+SFH Sbjct: 184 ADLIANASPFRDKHK-HPATRSFQAIRIYINSELEEIERALDGALEVLAPQGRLSVISFH 242 Query: 252 SLEDRLVKKFFA--SRSGKVMAVRHMIP-SNAHPAVFQSITKKVV---VPTQEDVAFNRR 305 SLEDR+VK+F SR +V A IP + A T K + +P +VA N R Sbjct: 243 SLEDRIVKRFMRHHSRGAQVPA---GIPLTEAQLRSMGGRTLKALGKMMPGDAEVAENPR 299 Query: 306 SRSAKLRAGMR 316 +RS+ LR R Sbjct: 300 ARSSVLRIAER 310 >gi|156935398|ref|YP_001439314.1| S-adenosyl-methyltransferase MraW [Cronobacter sakazakii ATCC BAA-894] gi|263447014|sp|A7MIE1|RSMH_ENTS8 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|156533652|gb|ABU78478.1| hypothetical protein ESA_03256 [Cronobacter sakazakii ATCC BAA-894] Length = 313 Score = 199 bits (507), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 123/309 (39%), Positives = 179/309 (57%), Gaps = 15/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + LN P + +D TFG GG+SR ++G ++A+DRDP Sbjct: 7 HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEQGRLLAIDRDP---QAIAA 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +FS+ FS L DYV ++ +DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 64 AAAIDDPRFSIIHGPFSALGDYVRERELQGKIDGILLDLGVSSPQLDDPERGFSFMRDGP 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G SA++ + A D+ +L GEE+ A RIA AIV+R + P T++L Sbjct: 124 LDMRMDPTRGQSAAEWLRNAEEADIAWVLKTFGEERFAKRIARAIVERNRELPMTRTKEL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+ A + L GG L V+SFH Sbjct: 184 AEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKGAVEVLAPGGRLSVISFH 242 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITK-KVVVPTQEDVAFNRRSRS 308 SLEDRLVK+F SR +V A M + + + ++P + +VA N R+RS Sbjct: 243 SLEDRLVKRFMREQSRGPQVPAGLPMTEAQLQKLGGRELRALGKLMPGEAEVAENPRARS 302 Query: 309 AKLRAGMRT 317 + LR RT Sbjct: 303 SVLRVAERT 311 >gi|148269200|ref|YP_001243660.1| S-adenosyl-methyltransferase MraW [Thermotoga petrophila RKU-1] gi|281411498|ref|YP_003345577.1| S-adenosyl-methyltransferase MraW [Thermotoga naphthophila RKU-10] gi|262825857|sp|A5IIR1|RSMH_THEP1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|147734744|gb|ABQ46084.1| S-adenosyl-methyltransferase MraW [Thermotoga petrophila RKU-1] gi|281372601|gb|ADA66163.1| S-adenosyl-methyltransferase MraW [Thermotoga naphthophila RKU-10] Length = 299 Score = 199 bits (507), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 115/306 (37%), Positives = 184/306 (60%), Gaps = 29/306 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77 H+PV++ +VI L P K+ILD T G GG+S++ + G +I +D D + +E Sbjct: 8 HIPVMVREVIEFLKPEDEKIILDCTVGEGGHSKAILEHCPGCRIIGIDVDSEVLRIAEEK 67 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++++ ++ SLF+ ++ + + GV DG++ DLGVS+ Q+ +RGF+F++ PLD Sbjct: 68 LKEFSDRASLFKISYREADFLLKTLGVEKVDGILMDLGVSTYQLKGENRGFTFEREEPLD 127 Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQ-ASRIAHAIVKRRQSAPFQTTQDLS 192 MRM S ++A V+N+ ++L RI+ GEEK+ A RIA IV+ R P TT DL Sbjct: 128 MRMDLESEVTAQKVLNELPEEELARIIFEYGEEKKFARRIARKIVENR---PLNTTLDLV 184 Query: 193 SLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +++ + Y + + H AT++FQA+RI+VN E+E L + LR AE L GG ++V+SF Sbjct: 185 KAVREALPSYEIRRRKRHFATKTFQAIRIYVNRELENLKEFLRKAEDLLNPGGRIVVISF 244 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDR+VK+ F R+ K + + +T+K V P++E++ N R+RS + Sbjct: 245 HSLEDRIVKETF--RNSKKLRI---------------LTEKPVRPSEEEIRENPRARSGR 287 Query: 311 LRAGMR 316 LRA R Sbjct: 288 LRAAER 293 >gi|307179074|gb|EFN67546.1| Putative S-adenosyl-L-methionine-dependent methyltransferase CG14683 [Camponotus floridanus] Length = 427 Score = 199 bits (507), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 121/329 (36%), Positives = 187/329 (56%), Gaps = 36/329 (10%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 ++PV+ ++V+ ++ +PGK +D TFGAGG++ F + S++ ALDRDP A Q+ Sbjct: 101 YLPVMAQEVLTYMDLSPGKTYVDMTFGAGGHTTKFLEYLSDIKIFALDRDPVAYKYAQQL 160 Query: 78 MRDYKEQFSLFQATFSQL-----QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + Y + TFS+L Q + +DG +FD G SSMQI+ +RGFS K+GP Sbjct: 161 SQKYPGKVIPLLGTFSELPQLLKQYNIKRNSIDGFLFDFGCSSMQIEDANRGFSLLKNGP 220 Query: 133 LDMRMS--CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQTTQ 189 LDMRM+ +A+DV+++A +DL RI+ + G+EK+A +IA AI++ R +TTQ Sbjct: 221 LDMRMNGCLKQPTAADVLDRATEEDLARIIKVYGQEKRAKKIARAIIEARYMFRKLETTQ 280 Query: 190 DLSSLIQ-------KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 +L L++ +T K + H A ++FQALRIFVNNE+ E+ G+ A LK Sbjct: 281 ELIQLVESVLDDEIRTDNLDKYS--HSAVKTFQALRIFVNNELNEINYGILLANIYLKLS 338 Query: 243 GLLIVVSFHSLEDRLVKKFFA---------------SRSGKVMAVRHMIPSNAHPAVFQS 287 G LI +SF+SLED ++K+ + + GKV P ++ Sbjct: 339 GRLITISFNSLEDTIIKRHLSGNITDNVANTVALKYANYGKVFNTNEFQILTEKP--WKM 396 Query: 288 ITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 + K V+ PT E++ N +S+SAKLRA M+ Sbjct: 397 MHKHVLTPTSEEIEINPKSQSAKLRAIMK 425 >gi|258593046|emb|CBE69357.1| S-adenosyl-dependent methyl transferase [NC10 bacterium 'Dutch sediment'] Length = 301 Score = 199 bits (507), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 119/308 (38%), Positives = 176/308 (57%), Gaps = 21/308 (6%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCG 74 G H+PVLLE+ +A L P PG LDAT G GG++ + + + +DRD A++ Sbjct: 5 GRHLPVLLEETVAFLQPRPGGCYLDATVGLGGHAETLLIESAPTGCLCGIDRDVEALALA 64 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + + + L F+ L + + DG++FDLG SS Q+D RGFSF + G Sbjct: 65 KGRLGQFGSRVELRYGDFASLGAIAAENEWRPFDGILFDLGFSSFQMDNASRGFSFMRDG 124 Query: 132 PLDMRMSCSGI--SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM G SA++++ + ++L R+L GEE+ A RIA IV+ R++ P +T Sbjct: 125 LLDMRMDRQGCDKSAAELLARIPERELARLLQDYGEERWAKRIAARIVEARRTQPLTSTA 184 Query: 190 DLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ L+ V + RIH ATR+FQALRI VN+E+ L +GL++A + L GG + V+ Sbjct: 185 QLARLVAAAVPRRAWPRRIHVATRTFQALRIAVNDELARLRRGLQNAVELLAVGGRICVI 244 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDR+VK+ F + + P + +TK+ VVPT+ + N R+RS Sbjct: 245 SFHSLEDRIVKEVFRGW------------ARSEPPRVRLLTKRPVVPTERESEINPRARS 292 Query: 309 AKLRAGMR 316 AKLRA R Sbjct: 293 AKLRAAER 300 >gi|147678204|ref|YP_001212419.1| S-adenosyl-methyltransferase MraW [Pelotomaculum thermopropionicum SI] gi|262824781|sp|A5D113|RSMH_PELTS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|146274301|dbj|BAF60050.1| predicted S-adenosylmethionine-dependent methyltransferase [Pelotomaculum thermopropionicum SI] Length = 311 Score = 199 bits (506), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 119/307 (38%), Positives = 179/307 (58%), Gaps = 19/307 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQE 76 H PV+L++V+ LN PG V +D T G G+ + K +I +DRDP A++ + Sbjct: 5 HRPVMLDEVLEGLNLKPGGVYVDCTVGGAGHGEAILKRTGAEGRLIGIDRDPEALAAAER 64 Query: 77 TMRDYKEQFSLFQATF---SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + Y ++ L +A F ++ + + GVDG++FDLGVSS Q+D RGFS+++ L Sbjct: 65 RLVPYGKRVDLVRANFEDIGKVLERLGQTGVDGILFDLGVSSYQLDNPARGFSYKRDSLL 124 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM G SA ++VN ++L RI+ GEE+ A RIA IV+ R+ +P +TT L+ Sbjct: 125 DMRMDPERGPSARELVNTLTAEELARIIKDYGEERWAFRIAAFIVEERKRSPIETTGRLA 184 Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+K + ++ HPA R+FQALRI VN E+E L LRSA + L+ GG + V+++H Sbjct: 185 EIIKKAIPAGARREGPHPARRTFQALRIAVNRELEVLGGALRSAVRVLRPGGRICVITYH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV------FQSITKKVVVPTQEDVAFNRR 305 SLEDR+VK+ F + +A P V + +T + VVP+ +V N R Sbjct: 245 SLEDRIVKETF-----RRLASPCTCPKEFPACVCGGKKEIKIVTARPVVPSAGEVEENPR 299 Query: 306 SRSAKLR 312 +RSAKLR Sbjct: 300 ARSAKLR 306 >gi|78484904|ref|YP_390829.1| methyltransferase [Thiomicrospira crunogena XCL-2] gi|123555855|sp|Q31I68|RSMH_THICR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|78363190|gb|ABB41155.1| S-adenosyl-methyltransferase MraW [Thiomicrospira crunogena XCL-2] Length = 314 Score = 199 bits (506), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 123/310 (39%), Positives = 183/310 (59%), Gaps = 19/310 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQ 75 +H PV+L + +A LN P + +D TFG GG+SR+ ++G ++A+D+DP A+ Sbjct: 11 NHYPVMLSESVAGLNIDPNGIYIDCTFGRGGHSRAILNELGEQGRLLAIDQDPEAIRYAD 70 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 D + F + +F LQ Y + +DG++ DLGVSS Q+D +RGFSF +SG Sbjct: 71 ANFDDPR--FEIQHGSFEALQQYCEARDWVGKIDGILIDLGVSSPQLDEAERGFSFMRSG 128 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ +G+SA + + Q + K L ++L GEE+ + RIA I + Q QTT D Sbjct: 129 PLDMRMNPQTGLSAKEWLTQVDEKTLAQVLKQYGEERFSGRIARHIKEAVQEQKLQTTLD 188 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ ++ K ++ ++ HPATR+FQA+RI VN E++ L L + LK GG L V+SF Sbjct: 189 LAQVVTKASPKTEKHK-HPATRTFQAIRIAVNRELDVLKTVLEVSVAVLKTGGRLSVISF 247 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSITKKV---VVPTQEDVAFNRRS 306 HSLEDR+VK+F +S ++ + P S V + + KKV V P++E+ N RS Sbjct: 248 HSLEDRIVKQFIRDQS----RIKDLFPDSPIQLEVVEPVIKKVGKPVFPSKEECQENPRS 303 Query: 307 RSAKLRAGMR 316 RSA LR R Sbjct: 304 RSAVLRIAER 313 >gi|327479635|gb|AEA82945.1| S-adenosyl-methyltransferase MraW [Pseudomonas stutzeri DSM 4166] Length = 315 Score = 199 bits (506), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 122/305 (40%), Positives = 184/305 (60%), Gaps = 16/305 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76 H+ VLL++ +A L+ LD TFG GG+SR + +G N ++ D+DP A++ GQ Sbjct: 9 HITVLLDEAVAALSVRADGRYLDGTFGRGGHSRLLLQQLGPNGQLLGFDKDPLAIATGQ- 67 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F + Q +F++L D V +G V G++ DLGVSS Q+D RGFSF GP Sbjct: 68 ALAAEDGRFVVVQRSFAELGDEVAQRGWMGAVSGILLDLGVSSPQLDDPIRGFSFLNDGP 127 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G+SAS+ + A+ ++ R+ GEE+ A R+A A+V+RR APF+ T DL Sbjct: 128 LDMRMDPSRGVSASEWIASADEDEIARVFKDYGEERFAKRMARAVVQRRAEAPFERTADL 187 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ + + +PATR+FQ LRI +NNE+ +L GL +A +AL+ GG L+V+SFH Sbjct: 188 AKVLTDANPAWEKGK-NPATRAFQGLRIHINNELGDLECGLDAALEALEVGGRLVVISFH 246 Query: 252 SLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVP---TQEDVAFNRRSR 307 SLEDR+VK+F + G+ + +P P F+ K + P ++ +V N RSR Sbjct: 247 SLEDRIVKQFMRRHAKGEADKLPRDLP--IIPKAFEPRLKLIGKPQYASEAEVKANPRSR 304 Query: 308 SAKLR 312 SA +R Sbjct: 305 SAVMR 309 >gi|22127508|ref|NP_670931.1| S-adenosyl-methyltransferase MraW [Yersinia pestis KIM 10] gi|45443369|ref|NP_994908.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar Microtus str. 91001] gi|51595030|ref|YP_069221.1| S-adenosyl-methyltransferase MraW [Yersinia pseudotuberculosis IP 32953] gi|108809545|ref|YP_653461.1| S-adenosyl-methyltransferase MraW [Yersinia pestis Antiqua] gi|108810578|ref|YP_646345.1| S-adenosyl-methyltransferase MraW [Yersinia pestis Nepal516] gi|150260418|ref|ZP_01917146.1| S-adenosyl-methyltransferase [Yersinia pestis CA88-4125] gi|153947578|ref|YP_001402352.1| S-adenosyl-methyltransferase MraW [Yersinia pseudotuberculosis IP 31758] gi|162419065|ref|YP_001607303.1| S-adenosyl-methyltransferase MraW [Yersinia pestis Angola] gi|165928201|ref|ZP_02224033.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar Orientalis str. F1991016] gi|165937803|ref|ZP_02226364.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar Orientalis str. IP275] gi|166008805|ref|ZP_02229703.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar Antiqua str. E1979001] gi|166212069|ref|ZP_02238104.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar Antiqua str. B42003004] gi|167401265|ref|ZP_02306765.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167422048|ref|ZP_02313801.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426442|ref|ZP_02318195.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167470126|ref|ZP_02334830.1| S-adenosyl-methyltransferase MraW [Yersinia pestis FV-1] gi|170025741|ref|YP_001722246.1| S-adenosyl-methyltransferase MraW [Yersinia pseudotuberculosis YPIII] gi|186894036|ref|YP_001871148.1| S-adenosyl-methyltransferase MraW [Yersinia pseudotuberculosis PB1/+] gi|218927743|ref|YP_002345618.1| S-adenosyl-methyltransferase MraW [Yersinia pestis CO92] gi|229837062|ref|ZP_04457227.1| S-adenosyl-dependent methyltransferase protein with activity on membrane-located substrates [Yersinia pestis Pestoides A] gi|229840435|ref|ZP_04460594.1| S-adenosyl-dependent methyltransferase protein with activity on membrane-located substrates [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843023|ref|ZP_04463173.1| S-adenosyl-dependent methyltransferase protein with activity on membrane-located substrates [Yersinia pestis biovar Orientalis str. India 195] gi|229900770|ref|ZP_04515894.1| S-adenosyl-dependent methyltransferase protein with activity on membrane-located substrates [Yersinia pestis Nepal516] gi|270487860|ref|ZP_06204934.1| S-adenosyl-methyltransferase MraW [Yersinia pestis KIM D27] gi|294502635|ref|YP_003566697.1| S-adenosyl-methyltransferase [Yersinia pestis Z176003] gi|20139012|sp|Q8ZIF7|RSMH_YERPE RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|85542907|sp|Q66EL3|RSMH_YERPS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|122979342|sp|Q1C206|RSMH_YERPA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|123246757|sp|Q1CMN5|RSMH_YERPN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263504671|sp|A7FM74|RSMH_YERP3 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263504678|sp|B2K4D8|RSMH_YERPB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263504680|sp|A9R132|RSMH_YERPG RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263504693|sp|B1JK89|RSMH_YERPY RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|21960606|gb|AAM87182.1|AE013965_9 putative apolipoprotein [Yersinia pestis KIM 10] gi|45438238|gb|AAS63785.1| Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Yersinia pestis biovar Microtus str. 91001] gi|51588312|emb|CAH19920.1| S-adenosyl-dependent methyl transferase [Yersinia pseudotuberculosis IP 32953] gi|108774226|gb|ABG16745.1| hypothetical protein YPN_0413 [Yersinia pestis Nepal516] gi|108781458|gb|ABG15516.1| hypothetical protein YPA_3554 [Yersinia pestis Antiqua] gi|115346354|emb|CAL19226.1| conserved hypothetical protein [Yersinia pestis CO92] gi|149289826|gb|EDM39903.1| S-adenosyl-methyltransferase [Yersinia pestis CA88-4125] gi|152959073|gb|ABS46534.1| S-adenosyl-methyltransferase MraW [Yersinia pseudotuberculosis IP 31758] gi|162351880|gb|ABX85828.1| S-adenosyl-methyltransferase MraW [Yersinia pestis Angola] gi|165914215|gb|EDR32831.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar Orientalis str. IP275] gi|165919812|gb|EDR37113.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar Orientalis str. F1991016] gi|165992144|gb|EDR44445.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar Antiqua str. E1979001] gi|166206815|gb|EDR51295.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar Antiqua str. B42003004] gi|166960185|gb|EDR56206.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049290|gb|EDR60698.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054540|gb|EDR64348.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169752275|gb|ACA69793.1| S-adenosyl-methyltransferase MraW [Yersinia pseudotuberculosis YPIII] gi|186697062|gb|ACC87691.1| S-adenosyl-methyltransferase MraW [Yersinia pseudotuberculosis PB1/+] gi|229682109|gb|EEO78201.1| S-adenosyl-dependent methyltransferase protein with activity on membrane-located substrates [Yersinia pestis Nepal516] gi|229689899|gb|EEO81958.1| S-adenosyl-dependent methyltransferase protein with activity on membrane-located substrates [Yersinia pestis biovar Orientalis str. India 195] gi|229696801|gb|EEO86848.1| S-adenosyl-dependent methyltransferase protein with activity on membrane-located substrates [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706005|gb|EEO92014.1| S-adenosyl-dependent methyltransferase protein with activity on membrane-located substrates [Yersinia pestis Pestoides A] gi|262360665|gb|ACY57386.1| S-adenosyl-methyltransferase [Yersinia pestis D106004] gi|262364611|gb|ACY61168.1| S-adenosyl-methyltransferase [Yersinia pestis D182038] gi|270336364|gb|EFA47141.1| S-adenosyl-methyltransferase MraW [Yersinia pestis KIM D27] gi|294353094|gb|ADE63435.1| S-adenosyl-methyltransferase [Yersinia pestis Z176003] gi|320016913|gb|ADW00485.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 320 Score = 199 bits (506), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 123/313 (39%), Positives = 182/313 (58%), Gaps = 19/313 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMG--SNVIALDRDPFAVSCGQE 76 H VLL++ + LN + +D TFG GG+SR ++G +IA+DRDP A+ ++ Sbjct: 14 HTSVLLDEAVKGLNIRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDRDPEAIEAAKQ 73 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +FS+ FS L YV D +DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 74 IT---DPRFSIVHGPFSDLAHYVRDLDLVGRIDGILLDLGVSSPQLDDAERGFSFMRDGP 130 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G+SA++ + +A+ D+ +L GEE+ A R+A AIV+R + P T++L Sbjct: 131 LDMRMDPSRGLSAAEWLMKASADDIAWVLKTFGEERFAKRLAKAIVERNLTQPMTRTKEL 190 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI F ++ HPATRSFQA+RI++N+E+EE+ + L A + L G L V+SFH Sbjct: 191 ADLIANASPFRDKHK-HPATRSFQAIRIYINSELEEIERALDGAHEVLAPEGRLSVISFH 249 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306 SLEDR+VK F SR +V A + + +S+ K ++P ++A N R+ Sbjct: 250 SLEDRIVKNFIRHHSRGPQVPAGLPLTEAQLRSMGGRTLKSVGK--MMPGDAEIAENPRA 307 Query: 307 RSAKLRAGMRTVE 319 RS+ LR R E Sbjct: 308 RSSVLRFAERIGE 320 >gi|221632091|ref|YP_002521312.1| S-adenosyl-methyltransferase MraW [Thermomicrobium roseum DSM 5159] gi|262825878|sp|B9L274|RSMH_THERP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|221156426|gb|ACM05553.1| S-adenosyl-methyltransferase MraW [Thermomicrobium roseum DSM 5159] Length = 326 Score = 199 bits (506), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 126/305 (41%), Positives = 172/305 (56%), Gaps = 9/305 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H PVLL + L P G +DATFG GG+SR+ + + V+A+D DP AV+ + Sbjct: 17 HEPVLLSAALTFLAPRDGGRYIDATFGGGGHSRAILEASAPSGQVLAIDADPAAVARARA 76 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 Y + F L G VDG++FDLG+SS Q+ RGFSFQ +GPL Sbjct: 77 LAERYPGRLLPCHGNFRDLARLAQSYGFVPVDGILFDLGLSSDQLADPARGFSFQLAGPL 136 Query: 134 DMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMR SG A+ +VN + ++L + GEE +A IA IV R P +TT L+ Sbjct: 137 DMRFDPTSGEPAAVIVNTWSAEELAELFWQYGEEPRAWAIAQTIVAERARQPIETTTQLA 196 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +L+ + V S+ RIHPATR FQALRI VN E+E LA GL A + L+ GG L+V++FHS Sbjct: 197 ALVAR-VAGSRRERIHPATRVFQALRIAVNQELEALAAGLAQAVELLRPGGRLVVIAFHS 255 Query: 253 LEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDRLVK+FF + + + H + +T + V P+ E++ N RSRSA+L Sbjct: 256 LEDRLVKQFFRREAAACLCPPGTPVCICGHRPRLRLLTPRPVRPSAEEITRNPRSRSARL 315 Query: 312 RAGMR 316 RA R Sbjct: 316 RAAER 320 >gi|218289891|ref|ZP_03494081.1| S-adenosyl-methyltransferase MraW [Alicyclobacillus acidocaldarius LAA1] gi|218240031|gb|EED07217.1| S-adenosyl-methyltransferase MraW [Alicyclobacillus acidocaldarius LAA1] Length = 316 Score = 199 bits (506), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 117/303 (38%), Positives = 186/303 (61%), Gaps = 9/303 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VLLE+ + L P PG V +DAT G GG++ + G VIA D+D A++ + Sbjct: 5 HETVLLEEAVEALRPRPGGVYVDATLGGGGHTARLLERSAPGGAVIAFDQDETAIAHAEP 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 R Y + +L +A F+++++ + GV DGV+FDLGVSS Q D +RGFS+ GPL Sbjct: 65 LKRQYPGRLTLVKANFAEMEERLRALGVTAVDGVLFDLGVSSPQFDLPERGFSYWHEGPL 124 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM ++A ++VN+ + ++L RI+ GEE+ A+ IA AI + R P +TT +L+ Sbjct: 125 DMRMDRHQPLTAREIVNEWDEQELARIIREYGEERFATAIARAIARARSKKPIETTTELA 184 Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +++ + ++ + HPA R+FQA+RI VN+E+ L +G+ +A +AL+ GG L V++FH Sbjct: 185 EIVKSAIPAAARRSGPHPARRTFQAIRIAVNDELGALERGMEAAFRALRPGGRLSVITFH 244 Query: 252 SLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR VK+ F + + G + + + + +++K V P+ E++ N R+RSAK Sbjct: 245 SLEDRAVKRLFQTWAQGCICPPEFPVCQCGRKPLGRMVSRKPVTPSSEELERNPRARSAK 304 Query: 311 LRA 313 LRA Sbjct: 305 LRA 307 >gi|322436313|ref|YP_004218525.1| S-adenosyl-methyltransferase MraW [Acidobacterium sp. MP5ACTX9] gi|321164040|gb|ADW69745.1| S-adenosyl-methyltransferase MraW [Acidobacterium sp. MP5ACTX9] Length = 297 Score = 199 bits (506), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 131/305 (42%), Positives = 179/305 (58%), Gaps = 28/305 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76 HVPVLLE+ + LN PG V +DAT G GG+S + K +G +IA DRDP A+S Q Sbjct: 6 HVPVLLEEALEYLNVRPGGVYVDATLGLGGHSSAIAKKLGGQGKLIAFDRDPDAMSKAQA 65 Query: 77 TMRDYKEQFSLFQAT-------FSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 + KE+ T FS+ D + +DG++ D GVSSMQ+D RGFSF+ Sbjct: 66 RLEALKEELGAEMPTVQFEPRAFSEAGDAIAKGSLDGLLADFGVSSMQLDEAHRGFSFRS 125 Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM SG +A VVN+ + +L ++ GEE+++ RIA AIV+ R P TT Sbjct: 126 DGPLDMRMDTRSGETAGQVVNEEDENELADLIYEFGEERRSRRIARAIVRAR---PISTT 182 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ +I K ++IHPATR+FQA+R+ VN+E+ E+ L+SA LK GG L+++ Sbjct: 183 AELARIISAAAPPMKGDKIHPATRTFQAIRMRVNDELGEIQSLLKSAGSLLKPGGRLVMI 242 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDRLVK F R + F +TKK V+ +++ N RSRS Sbjct: 243 SFHSLEDRLVKDAF----------REL----GRDKKFTVLTKKPVIAAEQESLRNPRSRS 288 Query: 309 AKLRA 313 AKLRA Sbjct: 289 AKLRA 293 >gi|121535927|ref|ZP_01667723.1| S-adenosyl-methyltransferase MraW [Thermosinus carboxydivorans Nor1] gi|121305498|gb|EAX46444.1| S-adenosyl-methyltransferase MraW [Thermosinus carboxydivorans Nor1] Length = 313 Score = 199 bits (506), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 121/301 (40%), Positives = 169/301 (56%), Gaps = 8/301 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H VLLE+ +A L P + +D T G GG+S S +I +D+DP A++ GQ Sbjct: 8 HKTVLLEESVAALVTNPAGIYVDCTLGGGGHSALIASRLSPEGWLIGIDQDPAAIAAGQA 67 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + L + FS L + G VDGV+FDLGVSS Q+D RGFS+ + PL Sbjct: 68 RLAGASCRIDLVRDNFSNLSRILTTLGIESVDGVLFDLGVSSHQLDVAQRGFSYMQDAPL 127 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S ISA DVVN + DLTRI+ GEE+ A RIA IV+ R +AP TT L+ Sbjct: 128 DMRMDPSAPISAYDVVNTYSEDDLTRIIRDYGEERWARRIAQFIVQARMTAPICTTGQLT 187 Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I++ + ++ + HPA R+FQA+RI VNNE+ L +A + LK GG + +++FH Sbjct: 188 DIIKRAIPAAARRDGPHPAKRTFQAIRIEVNNELSILQDAFITAVQFLKCGGRICIITFH 247 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+ K S + + + H I K + PT E++ N R+RSAKL Sbjct: 248 SLEDRIAKHTLQSLAKGCVCPPQLPICVCHNKPKLKILGKPITPTAEELDDNHRARSAKL 307 Query: 312 R 312 R Sbjct: 308 R 308 >gi|293392868|ref|ZP_06637186.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Serratia odorifera DSM 4582] gi|291424727|gb|EFE97938.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Serratia odorifera DSM 4582] Length = 313 Score = 199 bits (506), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 123/315 (39%), Positives = 190/315 (60%), Gaps = 29/315 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMG--SNVIALDRDPFAVSCGQE 76 H VLL++ + LN + +D TFG GG+SR ++G ++A+DRDP A++ + Sbjct: 7 HTTVLLDEAVNGLNIRSNGIYIDGTFGRGGHSRLILSQLGPEGRLLAIDRDPQAIAAAK- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 ++ D + F++ FS L YV ++ +DGV+ DLGVSS Q+D +RGFSF + GP Sbjct: 66 SIEDPR--FTIVHGPFSDLSHYVRERELVGKIDGVLLDLGVSSPQLDDAERGFSFMRDGP 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G SA++ + +A D+ +L GEE+ A RIA AIV+R ++ P T++L Sbjct: 124 LDMRMDPTRGQSAAEWLLKAEADDIAWVLKTFGEERFAKRIARAIVERNKTEPMTRTKEL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI F + ++ HPATRSFQA+RI++N+E+EE+ + L A + L G L ++SFH Sbjct: 184 ADLIADASPFREKHK-HPATRSFQAIRIYINSELEEIERALDGALEVLAPQGRLSIISFH 242 Query: 252 SLEDRLVKKFFA--SRSGKVMA--------VRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 SLEDR+VK+F SR +V A +R + N +S+ K ++P++ +VA Sbjct: 243 SLEDRIVKRFMRHHSRGAQVPAGLPLTEAQLRELGGRN-----LKSLGK--MMPSEAEVA 295 Query: 302 FNRRSRSAKLRAGMR 316 N R+RS+ LR R Sbjct: 296 ENPRARSSVLRIAER 310 >gi|209696060|ref|YP_002263990.1| S-adenosyl-methyltransferase MraW [Aliivibrio salmonicida LFI1238] gi|263446678|sp|B6ELI3|RSMH_ALISL RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|208010013|emb|CAQ80336.1| S-adenosyl-methyltransferase MraW [Aliivibrio salmonicida LFI1238] Length = 316 Score = 199 bits (506), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 129/313 (41%), Positives = 178/313 (56%), Gaps = 20/313 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 HV VLL + I L P + +D TFG GG+SR ++G N + ++DRDP A++ + Sbjct: 7 HVSVLLHESIDGLAIKPDGIYIDGTFGRGGHSRQILSRLGENGRLYSIDRDPQAIAEAK- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 T+ D + F++ FS L+ YV + G +DGV+ DLGVSS Q+D DRGFSF K GP Sbjct: 66 TITDPR--FNIIHGPFSGLKGYVEELGLVGQIDGVLLDLGVSSPQLDDADRGFSFMKDGP 123 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR---QSAPFQTT 188 LDMRM SG+ S + A+V+D+T ++ GE+K A RIA IV R ++ P T Sbjct: 124 LDMRMDPTSGMPVSQWLLTADVEDITWVIREFGEDKHAWRIAKGIVAYRDNEENEPLTRT 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ LI + + HPATR+FQA RI++N+E++E+ L A GG L V+ Sbjct: 184 GQLAKLISDVAPKNFKEKKHPATRTFQAFRIYINSELDEIDTALNGALDVFAEGGRLSVI 243 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITK---KVVVPTQEDVAFN 303 SFHSLEDR+VK F S + V H IP N A+ + K K + PT +V N Sbjct: 244 SFHSLEDRMVKHFIRKES-RGPQVPHGIPLTENQIKALGSAKMKPIGKAIKPTVNEVDVN 302 Query: 304 RRSRSAKLRAGMR 316 RSRS+ LR R Sbjct: 303 VRSRSSVLRIAER 315 >gi|295106887|emb|CBL04430.1| S-adenosyl-methyltransferase MraW [Gordonibacter pamelaeae 7-10-1-b] Length = 323 Score = 199 bits (506), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 120/320 (37%), Positives = 185/320 (57%), Gaps = 18/320 (5%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65 M+S H PVLL + + N P + +DAT G G+S K+ G +I +D Sbjct: 1 MTSEYQQQEFQHTPVLLAECLEQSNLKPQQTFVDATLGGAGHSLEMAKLIGPGGTLIGID 60 Query: 66 RDPFAVSCGQ---ETMRD-YKEQFSLFQATFSQLQDY-----VPDKGVDGVVFDLGVSSM 116 +D A++ + E++ D + L + F + D VP GVD +FDLGVSS+ Sbjct: 61 QDEVALAAARSRLESLPDGQRPNLELLRGNFGDMDDLLVSAEVP--GVDAFLFDLGVSSV 118 Query: 117 QIDCGDRGFSFQKSGPLDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAH 174 QID RGFSF+++GPLDMRM + ++A+++VN N DLTRI+ +EK ASRIA Sbjct: 119 QIDTPSRGFSFKENGPLDMRMDPGKTTLTAAEIVNTYNAADLTRIIRAYSDEKWASRIAD 178 Query: 175 AIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLR 233 IV+ R + +T++ L +I+ + S + HPA R+FQALRI VN+E++ L +GL Sbjct: 179 FIVRSRANGRIETSEQLVDVIKAAIPASARRAGGHPAKRTFQALRIEVNSELDVLRRGLD 238 Query: 234 SAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKV 292 +A + L GG L+V+S+HSLEDR+VK+ F + + + + + + +T+K Sbjct: 239 AAVRWLNPGGRLVVISYHSLEDRIVKETFNAYANRCTCPPDLPVCVCGKEPILDLVTRKP 298 Query: 293 VVPTQEDVAFNRRSRSAKLR 312 ++PT ++ N R+RSAKLR Sbjct: 299 LLPTAGEIERNPRARSAKLR 318 >gi|88606985|ref|YP_505272.1| S-adenosyl-methyltransferase MraW [Anaplasma phagocytophilum HZ] gi|123495035|sp|Q2GK29|RSMH_ANAPZ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|88598048|gb|ABD43518.1| S-adenosyl-methyltransferase MraW [Anaplasma phagocytophilum HZ] Length = 295 Score = 199 bits (506), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 132/303 (43%), Positives = 180/303 (59%), Gaps = 25/303 (8%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78 H PVLL +++ LL+P G V +DATFG GGYSR + V+A+D+DP A Q Sbjct: 4 HRPVLLNEMLELLSPKDGAVYVDATFGGGGYSRGILERAKCTVLAIDQDPIASEFYQSLH 63 Query: 79 RDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + + F + FS+L++ + VDGVVFD+GVSSMQ+ DRGFSF K GPLDM Sbjct: 64 SQFPGRVHFFLSKFSRLREALQHFDHNQVDGVVFDVGVSSMQLSDPDRGFSFMKEGPLDM 123 Query: 136 RMS---CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA-PFQTTQDL 191 RM SA+ VN + KD+ ++ G E+ + R+ AI+ R+S + T DL Sbjct: 124 RMDMLRSQSKSAATFVNSLSEKDMADVIFYYGGERLSRRVTRAIISARESNNKIRNTSDL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +I+ V SK N I PATR+FQA+RI+VN+E+EEL GL +A + + GG +IV SFH Sbjct: 184 AKIIRSVVPRSKANPIDPATRTFQAIRIWVNDELEELKAGLEAASQIVGVGGKIIVTSFH 243 Query: 252 SLEDRLVK-KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK KF A R FQ I KK + PT+++++ N RSRSAK Sbjct: 244 SLEDRIVKHKFNALREKG----------------FQLINKKAIKPTEKEISENTRSRSAK 287 Query: 311 LRA 313 LR Sbjct: 288 LRG 290 >gi|84495974|ref|ZP_00994828.1| putative S-adenosylmethionine-dependent methyltransferase [Janibacter sp. HTCC2649] gi|84382742|gb|EAP98623.1| putative S-adenosylmethionine-dependent methyltransferase [Janibacter sp. HTCC2649] Length = 350 Score = 199 bits (506), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 118/310 (38%), Positives = 179/310 (57%), Gaps = 14/310 (4%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74 HVPVL ++++ LL PA PG V++D T G GG++ +F + + VI +DRD A++ Sbjct: 35 HVPVLRDRIVELLAPALTEPGSVLVDGTLGMGGHAEAFLEACPEATVIGIDRDEEALALA 94 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E + + ++F A + ++ D V D G V V+FDLGVSS+Q+D DRGF++ + Sbjct: 95 GERLARFGDRFRGVHAVYDEIGDVVKDLGLRDVQAVLFDLGVSSLQLDEADRGFAYAQDA 154 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM SGI+A++V+N DL RIL GEE+ A RI ++V+ R+ PF + Sbjct: 155 PLDMRMDQGSGITAAEVLNTYAPADLLRILRDFGEERFAKRIVSSVVRERELEPFTRSAR 214 Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L L++ V S+ HPA R+FQALRI VN+E+ + + + L GG + V+S Sbjct: 215 LVELLRAAVPAASQRTGGHPAKRTFQALRIEVNDELGAWQRAVLGSIDVLAVGGRIAVLS 274 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +HSLEDR+ K+ +G + IP H A + +T+ P++ + + N RS Sbjct: 275 YHSLEDRITKRALV--AGATSSTPPGIPVELPEHAAYLRLLTRGAEEPSESEQSTNPRSA 332 Query: 308 SAKLRAGMRT 317 SA+LR RT Sbjct: 333 SARLRVAERT 342 >gi|312885181|ref|ZP_07744860.1| S-adenosyl-methyltransferase MraW [Vibrio caribbenthicus ATCC BAA-2122] gi|309367121|gb|EFP94694.1| S-adenosyl-methyltransferase MraW [Vibrio caribbenthicus ATCC BAA-2122] Length = 316 Score = 199 bits (506), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 126/309 (40%), Positives = 176/309 (56%), Gaps = 20/309 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H+ VLL + I L+ P + +D TFG GG+SR+ K+G N + ++DRDP A++ E Sbjct: 7 HISVLLNESIDGLSIKPDGIYIDGTFGRGGHSRTILSKLGENGRLFSIDRDPQAIA---E 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +FS+ FS + DY VDGV+ DLGVSS Q+D +RGFSF K GP Sbjct: 64 AKKIQDPRFSIIHGPFSGIADYAETYDLVGKVDGVLLDLGVSSPQLDDAERGFSFMKDGP 123 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---PFQTT 188 LDMRM SGI S + +A + D+T ++ GE+K A RIA +IV R++A P T Sbjct: 124 LDMRMDPSSGIPVSQWLLEAELDDITWVIREFGEDKHARRIAKSIVAYRENADNPPLTRT 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ LI ++ S + HPATR+FQA RI++N+E++E+ L+ A L G L V+ Sbjct: 184 GQLAKLISESAPKSFKEKKHPATRAFQAFRIYINSELDEIDTALKGAVNILATKGRLSVI 243 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSN-----AHPAVFQSITKKVVVPTQEDVAFN 303 SFHSLEDR+VK F S K V H IP A + K + P+ ++V N Sbjct: 244 SFHSLEDRMVKHFIRKES-KGPQVPHGIPLTEEQIQALGSANLKAVGKAIKPSSKEVDEN 302 Query: 304 RRSRSAKLR 312 RSRS+ LR Sbjct: 303 TRSRSSVLR 311 >gi|238784576|ref|ZP_04628583.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia bercovieri ATCC 43970] gi|238714542|gb|EEQ06547.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia bercovieri ATCC 43970] Length = 320 Score = 199 bits (506), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 121/311 (38%), Positives = 179/311 (57%), Gaps = 15/311 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + LN + +D TFG GG+SR ++G +IA+DRDP A+ + Sbjct: 14 HTSVLLDEAVNGLNIRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDRDPQAIEAAKS 73 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +FS+ FS+L YV + +DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 74 IT---DPRFSIVHGPFSELAHYVRELDLVGRIDGILLDLGVSSPQLDDPERGFSFMRDGP 130 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G+SA++ + +A+ D+ +L GEE+ A R+A AIV+R + P T++L Sbjct: 131 LDMRMDPTRGLSAAEWLMKASADDIAWVLKTFGEERFAKRLAKAIVERNLTQPMTRTKEL 190 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI F + ++ HPATRSFQA+RI++N+E+EE+ + L A + L G L V+SFH Sbjct: 191 ADLIANASPFREKHK-HPATRSFQAIRIYINSELEEIERALDGAHEVLADEGRLSVISFH 249 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNRRSRS 308 SLEDR+VK F RS + + A T K + +P +VA N R+RS Sbjct: 250 SLEDRIVKNFIRQRSRGPQVPAGLPLTEAQLRSMGGRTMKSIGKMMPADAEVAENPRARS 309 Query: 309 AKLRAGMRTVE 319 + LR R E Sbjct: 310 SVLRFAERIKE 320 >gi|325925694|ref|ZP_08187072.1| S-adenosyl-methyltransferase MraW [Xanthomonas perforans 91-118] gi|325543910|gb|EGD15315.1| S-adenosyl-methyltransferase MraW [Xanthomonas perforans 91-118] Length = 347 Score = 199 bits (506), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 123/299 (41%), Positives = 173/299 (57%), Gaps = 11/299 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HVPVL +V+ L LD TFG GG++R + G ++ +D+DP A++ + Sbjct: 18 HVPVLYTQVLDGLQVTENGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDPEAIAVAEH 77 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + + S+ + +F+ L V VDG++ DLGVSS Q+D RGFSF K GPLDMR Sbjct: 78 SF-GGDARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLDVAGRGFSFGKDGPLDMR 136 Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M +G SA+ + QA+ +++ +L GEE+Q+ RIA AIV RR P T L+ LI Sbjct: 137 MDPDNGQSAAQWLAQASEREIADVLWTYGEERQSRRIARAIVARRAEQPLLRTAQLADLI 196 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 +V +++ HPATRSFQA+RI +N E+ +L GL +A ALK GG L V+SFHSLED Sbjct: 197 -ASVMPRGDSKTHPATRSFQAIRIHINRELADLEAGLDAALDALKPGGRLAVISFHSLED 255 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRSAKLR 312 R+VK+F A R K +P A P V Q ++ + E + N R+RSA LR Sbjct: 256 RIVKQFMA-RYAKAPPSNRRLP-EAQPFVPTLQLVSGAIKADDAE-LIVNPRARSAVLR 311 >gi|330811587|ref|YP_004356049.1| S-adenosyl-methyltransferase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379695|gb|AEA71045.1| S-adenosyl-methyltransferase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 315 Score = 199 bits (506), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 122/308 (39%), Positives = 182/308 (59%), Gaps = 20/308 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQ 75 +H+ VLL++ + L P LD TFG GG+SR S G ++ D+DP A++ GQ Sbjct: 8 NHITVLLDEAVEALAVRPDGCYLDGTFGRGGHSRLILSKLGPGGRLLGFDKDPQAIATGQ 67 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +F + Q +F++L V ++G V GV+ DLGVSS Q+D +RGFSF G Sbjct: 68 -ALAAEDGRFVIVQRSFAELASEVAERGLAGKVSGVLLDLGVSSPQLDDPERGFSFLNDG 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S GISA++ VN A V+++ R+ GEE+ + R+A A+V+RR PF+ T D Sbjct: 127 PLDMRMDPSRGISAAEFVNTAPVEEIARVFKEYGEERFSGRMARAVVERRDIKPFERTGD 186 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ ++ K + +PATR+FQ LRI VNNE+ +L GL +A +AL+ GG L+V+SF Sbjct: 187 LAEVL-KVANPAWEKGKNPATRAFQGLRIHVNNELGDLEVGLEAALEALEIGGRLVVISF 245 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVV------PTQEDVAFNR 304 HSLEDR+VK F + +P N P F++ K+ + ++ ++ N Sbjct: 246 HSLEDRIVKLFMRKLT---KGEADNLPRNL-PVRFEAFVPKIKIHGKAQFASEAELKANP 301 Query: 305 RSRSAKLR 312 R+RSA +R Sbjct: 302 RARSAVMR 309 >gi|332288560|ref|YP_004419412.1| S-adenosyl-methyltransferase MraW [Gallibacterium anatis UMN179] gi|330431456|gb|AEC16515.1| S-adenosyl-methyltransferase MraW [Gallibacterium anatis UMN179] Length = 321 Score = 199 bits (506), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 124/315 (39%), Positives = 182/315 (57%), Gaps = 20/315 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76 H VLL + + L P + +D TFG GG+SR S +IA+DRDP A++ Q Sbjct: 11 HFTVLLNEAVDGLAIKPNGIYIDGTFGRGGHSRRILSLLGEHGRLIAIDRDPQAIAAAQ- 69 Query: 77 TMRDYKEQFSLFQATFSQLQD----YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +++D + FS+ FS++ + Y +DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 70 SIQDPR--FSIEHHNFSEINEICEKYQLIGKIDGILLDLGVSSPQLDQAERGFSFMQDGP 127 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA------PF 185 LDMRM + G+SA+ + Q + DL +L GEE+ A RIA IV+ Q A P Sbjct: 128 LDMRMDTTKGLSAAQWLQQVSESDLAWVLKTFGEERFAKRIARNIVQFNQQAKLNGTEPL 187 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 T L+ LI +++ + ++ HPATRSFQA+RIF+N+E+EEL + L +A L G L Sbjct: 188 TRTLQLAQLIAQSIPLKEKHK-HPATRSFQAIRIFINSELEELEKILTAAIDVLAPQGRL 246 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ--SITKKVVVPTQEDVAFN 303 ++SFHSLEDRLVK+F +S R + + Q I K ++P+++++A N Sbjct: 247 SIISFHSLEDRLVKRFMKKQSKGDDIPRGLPLTEDQIERNQKLKIIGKAIMPSEQEIAVN 306 Query: 304 RRSRSAKLRAGMRTV 318 RSRSA LR R + Sbjct: 307 SRSRSAVLRVAERLL 321 >gi|255656635|ref|ZP_05402044.1| S-adenosyl-methyltransferase [Clostridium difficile QCD-23m63] gi|296449909|ref|ZP_06891673.1| S-adenosyl-methyltransferase MraW [Clostridium difficile NAP08] gi|296878290|ref|ZP_06902299.1| S-adenosyl-methyltransferase MraW [Clostridium difficile NAP07] gi|296261179|gb|EFH08010.1| S-adenosyl-methyltransferase MraW [Clostridium difficile NAP08] gi|296430738|gb|EFH16576.1| S-adenosyl-methyltransferase MraW [Clostridium difficile NAP07] Length = 311 Score = 199 bits (506), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 118/309 (38%), Positives = 176/309 (56%), Gaps = 15/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 HV VLL + I LN P V +D T G G+S+ K S+ I D+D A++ +E Sbjct: 5 HVSVLLNECIENLNIKPDGVYVDCTMGGAGHSKEIVKKLSDKGLFIGFDQDKNAINTAKE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + +Y+ + + F +++ + GV DGV+ DLGVSS Q+D DRGFS+ + PL Sbjct: 65 RLSEYEGRVKFVHSNFENIKEELEKIGVYKIDGVLADLGVSSHQLDEADRGFSYMQDAPL 124 Query: 134 DMRMS--CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 DMRM C SA DVVN +LT+I+ GE+ A RIA IV+ R + +TT +L Sbjct: 125 DMRMDVRCE-FSAYDVVNTYTEDELTKIIKDYGEDNWAKRIAKFIVEERANKTIETTGEL 183 Query: 192 SSLIQKTVYFSKNNRI---HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +I+K + K RI HPA R+FQA+RI VNNE+ + + + A + GG + ++ Sbjct: 184 VDIIKKAI--PKKARIDGPHPAKRTFQAIRIEVNNELGVITKMINDASSIMNEGGRICII 241 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+VK F + + +H+ I + + IT+K ++P++E+V N RSR Sbjct: 242 TFHSLEDRIVKNAFKYLASDCICPQHLPICQCDKESEVKIITRKPILPSEEEVEANPRSR 301 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 302 SAKLRVAEK 310 >gi|222100677|ref|YP_002535245.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Thermotoga neapolitana DSM 4359] gi|262825854|sp|B9KA96|RSMH_THENN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|221573067|gb|ACM23879.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Thermotoga neapolitana DSM 4359] Length = 300 Score = 199 bits (505), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 118/305 (38%), Positives = 186/305 (60%), Gaps = 30/305 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77 H+PV++ +VI L P K+ILD T G GG++R+ + G +I +D D + ++ Sbjct: 8 HIPVMVREVIEYLKPEDEKIILDCTVGEGGHARAILEHCPGCKLIGIDVDSEVLQIAEKK 67 Query: 78 MRDYKEQFSLFQATFSQ---LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++D+ ++ SLF+A++ L + + VDG++ DLGVS+ Q+ +RGF+F++ PLD Sbjct: 68 LKDFSDRVSLFKASYRDADFLLKTLEIEKVDGILLDLGVSTYQLKGENRGFTFEREEPLD 127 Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQ-ASRIAHAIVKRRQSAPFQTTQDLS 192 MRM S I+A V+N+ + ++L RI+ GEEK+ A RIA IV+ R P TT DL Sbjct: 128 MRMDLESEITAQKVLNELSEEELARIIFEYGEEKRYARRIARKIVENR---PLNTTLDLV 184 Query: 193 SLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQG-LRSAEKALKAGGLLIVVS 249 + + + + + + H ATR+FQA+RI+VN E+E L + L AEK L+ GG ++V+S Sbjct: 185 KAVSEALPSHEIRRRKRHFATRTFQAIRIYVNRELENLREFLLNKAEKLLRVGGRIVVIS 244 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDR+VK+ F R+ + + + +T+K V P++E+V N RSRSA Sbjct: 245 FHSLEDRIVKEAF--RNSRKLRI---------------LTEKPVRPSEEEVRENPRSRSA 287 Query: 310 KLRAG 314 +LRA Sbjct: 288 RLRAA 292 >gi|212712749|ref|ZP_03320877.1| hypothetical protein PROVALCAL_03846 [Providencia alcalifaciens DSM 30120] gi|212684665|gb|EEB44193.1| hypothetical protein PROVALCAL_03846 [Providencia alcalifaciens DSM 30120] Length = 317 Score = 199 bits (505), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 129/317 (40%), Positives = 181/317 (57%), Gaps = 24/317 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 HV VLL++ + LN P + +D TFG GG+SR ++G +IA+DRDP A+ QE Sbjct: 8 HVTVLLDEAVNGLNIKPNGIYIDGTFGRGGHSRLILSQLGEQGRLIAIDRDPEAIKAAQE 67 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +F + FS + DYV ++G +DGV+ DLGVSS Q+D +RGFSF + GP Sbjct: 68 I---NDPRFMIKHGPFSAIADYVEEEGLVGKIDGVLLDLGVSSPQLDDPERGFSFMRDGP 124 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR---QSAPFQTT 188 LDMRM + G SA + A D+ +L GEE+ + RIA AIV+R + P T Sbjct: 125 LDMRMDPTRGQSAQQWLMTAEADDIAWVLKTFGEERFSKRIARAIVERNHNPEEEPLTRT 184 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 + L+ LI K V K+ HPATRSFQA+RI++N+E+EE+ + L A L G L V+ Sbjct: 185 RHLAELIAK-VSPIKDRHKHPATRSFQAIRIYINSELEEIEKALNGAMSVLAPEGRLSVI 243 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIP------SNAHPAVFQSITKKVVVPTQEDVAF 302 SFHSLEDRLVK+F S +V IP A +++ K + P++ ++ Sbjct: 244 SFHSLEDRLVKRFIRQNSTGP-SVPAGIPLTEAQIKELGAAKLRALGK--MKPSELEIDE 300 Query: 303 NRRSRSAKLRAGMRTVE 319 N R+RS+ LR R VE Sbjct: 301 NPRARSSVLRFAERAVE 317 >gi|78046379|ref|YP_362554.1| S-adenosyl-methyltransferase MraW [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|88909226|sp|Q3BXF9|RSMH_XANC5 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|78034809|emb|CAJ22454.1| S-adenosyl-methyltransferase [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 337 Score = 199 bits (505), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 123/299 (41%), Positives = 173/299 (57%), Gaps = 11/299 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HVPVL +V+ L LD TFG GG++R + G ++ +D+DP A++ + Sbjct: 8 HVPVLYTQVLDGLQVTENGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDPEAIAVAEH 67 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + + S+ + +F+ L V VDG++ DLGVSS Q+D RGFSF K GPLDMR Sbjct: 68 SF-GGDARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLDVAGRGFSFGKDGPLDMR 126 Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M +G SA+ + QA+ +++ +L GEE+Q+ RIA AIV RR P T L+ LI Sbjct: 127 MDPDNGQSAAQWLAQASEREIADVLWTYGEERQSRRIARAIVARRAEQPLLRTAQLADLI 186 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 +V +++ HPATRSFQA+RI +N E+ +L GL +A ALK GG L V+SFHSLED Sbjct: 187 -ASVMPRGDSKTHPATRSFQAIRIHINRELADLEAGLDAALDALKPGGRLAVISFHSLED 245 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRSAKLR 312 R+VK+F A R K +P A P V Q ++ + E + N R+RSA LR Sbjct: 246 RIVKQFMA-RYAKAPPSNRRLP-EAQPFVPTLQLVSGAIKADDAE-LNVNPRARSAVLR 301 >gi|8134813|sp|P73460|RSMH_SYNY3 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|1652579|dbj|BAA17500.1| sll1144 [Synechocystis sp. PCC 6803] Length = 305 Score = 199 bits (505), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 131/325 (40%), Positives = 185/325 (56%), Gaps = 43/325 (13%) Query: 1 MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS- 59 ME + K + A H HV VL ++ L P PG LDAT GAGG+S K+G Sbjct: 6 MEGMNLKQTAIADFH----HVSVLPTALVEGLEPKPGGYYLDATVGAGGHSERLLKLGIP 61 Query: 60 -NVIALDRDPFAVSCGQETMR----DYKE-QFSLFQATFS----QLQDYVPDKGVDGVVF 109 + +DRD A++ E ++ D K+ + +Q F+ QL+ + DG++ Sbjct: 62 LALTMIDRDVQAIAAAMERLQPLVADRKDISINTWQGNFADFPGQLEQF------DGIIA 115 Query: 110 DLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQ 168 DLGVSS Q+D GDRGFSF+ + PLDMRM S ++A++++N + KDL RI GEE+ Sbjct: 116 DLGVSSPQLDQGDRGFSFRHTAPLDMRMDQSQDLTAAEIINHWSEKDLARIFYEYGEERL 175 Query: 169 ASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEE 227 + RIA IV++R PFQTT DL+ I K V ++ RIHPATR+FQ LRI VN+E+ Sbjct: 176 SRRIARQIVEQR---PFQTTTDLAEAITKWVPGKYRHGRIHPATRTFQGLRIAVNDELGS 232 Query: 228 LAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS 287 L + + A LK+GG ++SFHSLEDR+VK F R + + V Sbjct: 233 LEKFIAQAPHWLKSGGKFGIISFHSLEDRIVKHRF--RETENLRV--------------- 275 Query: 288 ITKKVVVPTQEDVAFNRRSRSAKLR 312 +TKK ++ +E+ N R+RSAKLR Sbjct: 276 LTKKPIIAGEEEQRQNPRARSAKLR 300 >gi|296116429|ref|ZP_06835043.1| S-adenosyl-methyltransferase MraW [Gluconacetobacter hansenii ATCC 23769] gi|295977022|gb|EFG83786.1| S-adenosyl-methyltransferase MraW [Gluconacetobacter hansenii ATCC 23769] Length = 340 Score = 199 bits (505), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 132/317 (41%), Positives = 181/317 (57%), Gaps = 20/317 (6%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQE 76 G H+PV+L +V+ L P G LD TFG GGY+R+ + A+DRDP A++ G Sbjct: 13 GGHIPVMLAEVLCDLAPRDGATYLDGTFGGGGYARAILSAAECTLWAIDRDPAAIARGAA 72 Query: 77 ---TMRDYKEQ--FSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQ 128 + D +EQ L + F + + +GVD GVV DLGVSS QID +RGFSF+ Sbjct: 73 LATSFPDGQEQSRLRLIKGGFGDMASLLAARGVDALDGVVLDLGVSSYQIDQPERGFSFR 132 Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM G +A+DVVN+ +L I+ GEE+ + R+A AIV R P TT Sbjct: 133 MDGPLDMRMGDEGTTAADVVNRYQESELADIIYTYGEERMSRRVARAIVAARAENPITTT 192 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ +++ V ++ I PATR+FQ LRI+VN+E+ ++ +GL A L GG L+VV Sbjct: 193 AALADIVRSVVRADRSG-IDPATRTFQGLRIYVNDELGQIERGLEQALGLLAPGGRLVVV 251 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIP-----SNAHPAVFQSITKKVVVPTQEDVAFN 303 SFHSLEDRLVK SG++ P S PA F+ + K + P+ + N Sbjct: 252 SFHSLEDRLVKLAMNRASGRMPGPSRHDPGAAMQSTQRPA-FRLVRNKAIRPSDTECRHN 310 Query: 304 RRSRSAKLRAGMRTVER 320 R+RSA+L RTVER Sbjct: 311 PRARSARL----RTVER 323 >gi|261493507|ref|ZP_05990029.1| S-adenosylmethionine-dependent methyltransferase [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261495860|ref|ZP_05992292.1| S-adenosylmethionine-dependent methyltransferase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261308487|gb|EEY09758.1| S-adenosylmethionine-dependent methyltransferase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310840|gb|EEY12021.1| S-adenosylmethionine-dependent methyltransferase [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 312 Score = 199 bits (505), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 125/311 (40%), Positives = 180/311 (57%), Gaps = 28/311 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQE 76 H+ VLL + + L P + +D TFG GG+SR K+G N +IA DRDP A++ Q Sbjct: 7 HITVLLHEAVDGLAIKPNGIYIDGTFGRGGHSRLILSKLGENGRLIATDRDPRAIAEAQ- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 T+ D + F + FS + + G +DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 66 TISDPR--FQIEHTAFSAIPELCERMGLVGKIDGILLDLGVSSPQLDEAERGFSFMRDGP 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA--PFQTTQ 189 LDMRM + G+SA++ + Q + +DL +L GEE+ A RIA A+V +SA T Sbjct: 124 LDMRMDTTKGLSAAEWLAQVSAEDLAWVLKEFGEERFAKRIAQAVVSYNKSANEKISRTL 183 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I V F K+ HPATRSFQA+RIF+N+E++EL + L SA L G L ++S Sbjct: 184 QLAQIIADAVPF-KDKHKHPATRSFQAIRIFINSELDELEKALNSALTVLAPEGRLSIIS 242 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK--------KVVVPTQEDVA 301 FHSLEDR+VK+F S + R + P + +TK K ++P++ ++ Sbjct: 243 FHSLEDRMVKQFVRKHSKGMDVPRGL------PILEAELTKNIPLKTIGKAIMPSEAEIE 296 Query: 302 FNRRSRSAKLR 312 N RSRSA LR Sbjct: 297 ANARSRSAVLR 307 >gi|328873505|gb|EGG21872.1| hypothetical protein DFA_01758 [Dictyostelium fasciculatum] Length = 387 Score = 199 bits (505), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 115/319 (36%), Positives = 181/319 (56%), Gaps = 22/319 (6%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAV 71 + G H PV++ +VI L+ G +DATFG GG++ + CK GS VIA+DRDP Sbjct: 53 NNYGIHKPVMVNEVIDRLHLKDGHCYIDATFGLGGHTLNILDRCK-GSFVIAVDRDPKIF 111 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD-----GVVFDLGVSSMQIDCGDRGFS 126 + Y+++ FS L + ++G+D GV+ D G SS+Q+D DRGFS Sbjct: 112 ELTAKIRETYQDRLITLHGNFSNLSQLLKERGLDTLKISGVLMDFGCSSLQLDSPDRGFS 171 Query: 127 FQKS--GPLDMRM-----SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 F+K GPLDMRM S ++A+D++N + + L I+ GEE+ ++AH I++R Sbjct: 172 FRKDFDGPLDMRMNNTDTSTQRLTATDILNTFSNQQLRDIMYYYGEERHTLKVAHEIIRR 231 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 RQ + T L +I+ + + + +R F++LR+FVN+E E+ +G+R AEK L Sbjct: 232 RQYERIEKTSQLVDIIESCIPYPAA--MKSISRIFRSLRMFVNDETGEIYRGMREAEKIL 289 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT-KKVVVPTQE 298 GG L+V+SFHS+EDR+ K+FF +R R + H F+ + + + PT E Sbjct: 290 APGGNLVVISFHSIEDRIAKRFFRNRCA---VKRSTLTPLQHDPSFEYVDGSQPLFPTDE 346 Query: 299 DVAFNRRSRSAKLRAGMRT 317 ++ +N RS+ A +R+ RT Sbjct: 347 EIEWNSRSKPAIVRSATRT 365 >gi|258625131|ref|ZP_05720048.1| S-adenosyl-methyltransferase mraW [Vibrio mimicus VM603] gi|262166452|ref|ZP_06034189.1| S-adenosyl-methyltransferase MraW [Vibrio mimicus VM223] gi|262170644|ref|ZP_06038322.1| S-adenosyl-methyltransferase MraW [Vibrio mimicus MB-451] gi|258582582|gb|EEW07414.1| S-adenosyl-methyltransferase mraW [Vibrio mimicus VM603] gi|261891720|gb|EEY37706.1| S-adenosyl-methyltransferase MraW [Vibrio mimicus MB-451] gi|262026168|gb|EEY44836.1| S-adenosyl-methyltransferase MraW [Vibrio mimicus VM223] Length = 316 Score = 199 bits (505), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 124/309 (40%), Positives = 175/309 (56%), Gaps = 20/309 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H+ VLL + I L P + +D TFG GG+SR+ ++G + ++DRDP A++ Q+ Sbjct: 7 HISVLLNESIEGLAIKPDGIYIDGTFGRGGHSRTILAQLGPQGRLYSIDRDPQAIAEAQK 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +F++ FS + +Y VDGV+FDLGVSS Q+D +RGFSF K GP Sbjct: 67 I---DDPRFTIIHGPFSGIAEYAQRYDLVGKVDGVLFDLGVSSPQLDDAERGFSFMKDGP 123 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---PFQTT 188 LDMRM SG+ S + QA++ D+T ++ GE+K A RIA AIV+ R++ P T Sbjct: 124 LDMRMDPTSGMPVSAWLAQADLDDITWVIREFGEDKHARRIAKAIVEYRENELNEPLTRT 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ LI S + HPATR+FQA RI++N+E+EE+ LR A L G L V+ Sbjct: 184 SQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALRGASDILAPQGRLSVI 243 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSN-----AHPAVFQSITKKVVVPTQEDVAFN 303 SFHSLEDR+VK+F S + V H IP A + K + P+ ++V N Sbjct: 244 SFHSLEDRMVKRFMRKES-QGPEVPHGIPLTQDQIRALGSAKMKTVGKALKPSDQEVELN 302 Query: 304 RRSRSAKLR 312 RSRS+ LR Sbjct: 303 PRSRSSVLR 311 >gi|145223567|ref|YP_001134245.1| S-adenosyl-methyltransferase MraW [Mycobacterium gilvum PYR-GCK] gi|145216053|gb|ABP45457.1| S-adenosyl-methyltransferase MraW [Mycobacterium gilvum PYR-GCK] Length = 371 Score = 199 bits (505), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 120/304 (39%), Positives = 174/304 (57%), Gaps = 10/304 (3%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCG 74 HVPVLL++ + LL PA G ++DAT GAGG+S F G +I LDRDP A+ Sbjct: 61 HVPVLLDRCVELLAPALTREGATLVDATLGAGGHSERFLTDFPGLRLIGLDRDPDALRIA 120 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E + + ++ +L + + + D V D VD ++FDLGVSSMQ+D +RGFS+ Sbjct: 121 GERLAPFADRITLVRTRYDGIADAVRDAAGGSVDAILFDLGVSSMQLDRVERGFSYSTDA 180 Query: 132 PLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S + ++A+ V+N + + L R+L GEEK A RIA IV+RR PF TT + Sbjct: 181 PLDMRMDSGADLTAAQVLNSYDERALARVLREYGEEKFAGRIAAFIVRRRAVTPFTTTGE 240 Query: 191 LSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L L+ + ++ HPA R+FQALRI VN E+E L + +A +AL+ G L V++ Sbjct: 241 LVELLYDAIPAPARRTGGHPAKRTFQALRIEVNAELESLRSAIPAALQALRPHGRLAVMA 300 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 + SLEDR+VK FA+ + + H F ++T+ E++ N RS Sbjct: 301 YQSLEDRIVKTAFAAATASRTPPGLPVELPGHGPEFVALTRGAERADAEEIERNPRSAPV 360 Query: 310 KLRA 313 +LRA Sbjct: 361 RLRA 364 >gi|33151483|ref|NP_872836.1| S-adenosyl-methyltransferase MraW [Haemophilus ducreyi 35000HP] gi|42559455|sp|Q7VP62|RSMH_HAEDU RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|33147703|gb|AAP95225.1| S-adenosyl-methyltransferase MraW [Haemophilus ducreyi 35000HP] Length = 313 Score = 199 bits (505), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 120/312 (38%), Positives = 186/312 (59%), Gaps = 16/312 (5%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPF 69 ++ T H+ VLL + + L P + +D TFG GG+SR ++ +N +IA+DRDP Sbjct: 1 MNETDHKHITVLLHEAVDGLAIKPNGIYIDGTFGRGGHSRLILSRLATNGRLIAIDRDPC 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGF 125 A++ T+ D + F + FS + + G +DG++ DLGVSS Q+D +RGF Sbjct: 61 AIAEAN-TISDAR--FQIIHTAFSAIPEVCESLGLMGKIDGILLDLGVSSPQLDDAERGF 117 Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV--KRRQS 182 SF + GPLDMRM + G+SA++ + Q +++DL +L GEE+ A RIA A+V + S Sbjct: 118 SFMRDGPLDMRMDTTKGLSAAEWLAQVSIEDLAWVLKTFGEERFAKRIAQAVVSYNKTNS 177 Query: 183 APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 T L+ +I V F K+ HPATRSFQA+RIF+N E++EL + L +A + L Sbjct: 178 EKITRTLQLAKIIADAVPF-KDKHKHPATRSFQAIRIFINRELDELEKALTNALRVLAPE 236 Query: 243 GLLIVVSFHSLEDRLVKKFFASRS-GKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDV 300 G L ++SFHSLEDR+VK+F S G+V+ ++ + + + +I K ++P++ ++ Sbjct: 237 GRLSIISFHSLEDRMVKQFMKKNSKGEVVPKGLPILEAELNKNIPLNIIGKAIMPSEAEI 296 Query: 301 AFNRRSRSAKLR 312 N RSRSA LR Sbjct: 297 VANARSRSAVLR 308 >gi|323491037|ref|ZP_08096229.1| 16S rRNA m(4)C1402 methyltranserfase [Vibrio brasiliensis LMG 20546] gi|323314701|gb|EGA67773.1| 16S rRNA m(4)C1402 methyltranserfase [Vibrio brasiliensis LMG 20546] Length = 316 Score = 199 bits (505), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 125/309 (40%), Positives = 176/309 (56%), Gaps = 20/309 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H+ VLL + I L P + +D TFG GG+SR+ K+ N + ++DRDP A++ Q+ Sbjct: 7 HISVLLHESIDGLAIKPDGIYIDGTFGRGGHSRTILSKLDENGRLYSIDRDPQAIAEAQK 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +F++ FS + +Y D VDGV+ DLGVSS Q+D +RGFSF K GP Sbjct: 67 I---DDPRFTIIHGPFSGMAEYAADYDLVGKVDGVLLDLGVSSPQLDDAERGFSFMKDGP 123 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---PFQTT 188 LDMRM SGI S + +A++ D+T ++ GE+K RIA AIV R++ P T Sbjct: 124 LDMRMDPTSGIPVSQWLMEADLDDITWVIREFGEDKHVRRIAKAIVAYRENEENEPLTRT 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ LI S + HPATR+FQA RI++N+E+EE+ L+ A L G L V+ Sbjct: 184 SQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAASILAPQGRLSVI 243 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH--PAVFQSITK---KVVVPTQEDVAFN 303 SFHSLEDR+VK+F S K V H IP A+ + K K + P++++V N Sbjct: 244 SFHSLEDRMVKRFIRKES-KGPEVPHGIPMTEEQIKALGSADLKPVGKAIKPSKQEVEHN 302 Query: 304 RRSRSAKLR 312 RSRS+ LR Sbjct: 303 ARSRSSVLR 311 >gi|329295550|ref|ZP_08252886.1| 16S rRNA m(4)C1402 methyltranserfase [Plautia stali symbiont] Length = 313 Score = 199 bits (505), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 126/309 (40%), Positives = 184/309 (59%), Gaps = 15/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + LN + +D TFG GG+SR ++G++ ++A+DRDP A++ E Sbjct: 7 HTTVLLDEAVNGLNIREDGIYIDGTFGRGGHSRLILSQLGAHGQLLAIDRDPQAIAAAAE 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 ++D + FS+ FS L +YV ++G +DGV+ DLGVSS Q+D +RGFSF + GP Sbjct: 67 -IKDPR--FSIVHGPFSALAEYVEERGLTGKIDGVLLDLGVSSPQLDDAERGFSFMRDGP 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM G SA++ + A D+ +L GEE+ A RIA AIV+R + P T++L Sbjct: 124 LDMRMDPRRGQSAAEWLQSAEEADIAFVLKTYGEERFAKRIARAIVERNREQPMTRTKEL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI K+ HPATRSFQA+RI++N+E+EE+ L+ A L GG L ++SFH Sbjct: 184 ADLIAAATPV-KDKFKHPATRSFQAIRIWLNSELEEIDIALKGALTVLAPGGRLSIISFH 242 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSI-TKKVVVPTQEDVAFNRRSRS 308 SLEDRLVK+F SR +V A M S + + T ++ + +V N R+RS Sbjct: 243 SLEDRLVKRFMRDQSRGPQVPAGIPMTESQLKALGGRELKTLGKLILGEAEVKDNPRARS 302 Query: 309 AKLRAGMRT 317 + LR RT Sbjct: 303 SVLRIAERT 311 >gi|260596507|ref|YP_003209078.1| 16S rRNA m(4)C1402 methyltranserfase [Cronobacter turicensis z3032] gi|260215684|emb|CBA28014.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Cronobacter turicensis z3032] Length = 313 Score = 199 bits (505), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 123/309 (39%), Positives = 178/309 (57%), Gaps = 15/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + LN P + +D TFG GG+SR ++G ++A+DRDP Sbjct: 7 HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEQGRLLAIDRDP---QAIAA 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +FS+ FS L DYV ++ +DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 64 AAAIDDPRFSIIHGPFSALGDYVRERELQGKIDGILLDLGVSSPQLDDPERGFSFMRDGP 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G SA++ + A D+ +L GEE+ A RIA AIV+R + P T++L Sbjct: 124 LDMRMDPTRGQSAAEWLRNAEEADIAWVLKTFGEERFAKRIARAIVERNRELPMTRTKEL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+ A L GG L V+SFH Sbjct: 184 AEVVAAATPI-KDKFKHPATRTFQAVRIWVNSELEEIEQALKGAVDVLAPGGRLSVISFH 242 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITK-KVVVPTQEDVAFNRRSRS 308 SLEDRLVK+F SR +V A M + + + ++P + +VA N R+RS Sbjct: 243 SLEDRLVKRFMREQSRGPQVPAGLPMTEAQLQKLGGRDLRALGKLMPGEAEVAENPRARS 302 Query: 309 AKLRAGMRT 317 + LR RT Sbjct: 303 SVLRIAERT 311 >gi|227494640|ref|ZP_03924956.1| S-adenosyl-methyltransferase [Actinomyces coleocanis DSM 15436] gi|226831822|gb|EEH64205.1| S-adenosyl-methyltransferase [Actinomyces coleocanis DSM 15436] Length = 344 Score = 199 bits (505), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 114/308 (37%), Positives = 189/308 (61%), Gaps = 14/308 (4%) Query: 20 HVPVLLEKVIALLNPAPGKV----ILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSC 73 H PVL+++V+ LL PA V ++DAT G GG++ + NV I +DRDP A+ Sbjct: 22 HEPVLIDEVLDLLAPAFTGVEIATMIDATLGMGGHTEAVITAFPNVRVIGIDRDPNAIRL 81 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQK 129 + + + E+F AT+ + + + G +D V+ DLGVSS+Q+D +RGF++ + Sbjct: 82 ASKRLESFGERFKAVHATYDSVYEVAEENGLAGKIDAVLMDLGVSSLQLDDDERGFAYSR 141 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 + LDMRM + GI+A++++ A+ +LTRIL GEEK ASRIA I K+R++ P +T+ Sbjct: 142 NTYLDMRMDPTQGITAAELLATASAAELTRILRTFGEEKFASRIARNIEKQRETKPIETS 201 Query: 189 QDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L+ +++ ++ ++ +PA R+FQALR+ VN E++ LA + +A ++LK GG L+V Sbjct: 202 LELTEIVRASIPAAARRQGGNPAKRTFQALRVAVNEELDILADAVPAALESLKVGGRLVV 261 Query: 248 VSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 S+ SLEDR+VK S + +IP + P+ +++T+K + T+E +A N R+ Sbjct: 262 ESYQSLEDRIVKNVIKDGSEINIPPGLPVIPDHLKPS-LENVTRKAIQATEEQIADNPRA 320 Query: 307 RSAKLRAG 314 S +LRA Sbjct: 321 ASVRLRAA 328 >gi|22299615|ref|NP_682862.1| putative methyltransferase [Thermosynechococcus elongatus BP-1] gi|30173039|sp|Q8DH87|RSMH_THEEB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|22295799|dbj|BAC09624.1| tlr2072 [Thermosynechococcus elongatus BP-1] Length = 290 Score = 199 bits (505), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 120/301 (39%), Positives = 171/301 (56%), Gaps = 25/301 (8%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H PVL V+ L P G + LDAT G GG++ + V+A+D+DP A++ QE Sbjct: 10 HQPVLAPAVLEALQPKAGGLYLDATVGGGGHTALLLRREPTCRVLAIDQDPMALAAAQEF 69 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 + + ++ + F+ L V + DG++ DLGVSS Q+D +RGFSF+ PLDMRM Sbjct: 70 LAPFGDRVQFWHGNFADLP--VAEPMFDGILADLGVSSAQLDRPERGFSFRFDAPLDMRM 127 Query: 138 S-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 + + ++A+ V+N + ++L I GEE+ A RIA IV RR P TQ+L+ L+ Sbjct: 128 NPANPLTAATVINHYSEQELADIFYEYGEERFARRIARQIVARR---PLNRTQELAQLVA 184 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 + S RIHPATR FQALRI+VN E+ L Q L + LK G + V+SFHSLEDR Sbjct: 185 HCLKASPRQRIHPATRVFQALRIYVNQELAVLDQFLARSPHWLKPTGRIAVISFHSLEDR 244 Query: 257 LVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 VK+ A R+ ++ V +T+K +V +V+ N RSRSAKLR +R Sbjct: 245 RVKQ--AWRANPLLEV---------------VTRKPIVADAVEVSLNPRSRSAKLRIAVR 287 Query: 317 T 317 T Sbjct: 288 T 288 >gi|262831548|sp|A9WRE6|RSMH_RENSM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 331 Score = 198 bits (504), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 120/309 (38%), Positives = 181/309 (58%), Gaps = 15/309 (4%) Query: 20 HVPVLLEKVIALLNPA------PGK--VILDATFGAGGYSRSFCKMGSNV--IALDRDPF 69 HVPVL ++ + LL PA G+ V++DAT G GG+S + N+ I +DRD Sbjct: 13 HVPVLRDRCVNLLAPAIEAANLAGRRAVVVDATLGMGGHSEAMLTRFENLHLIGIDRDTQ 72 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFS 126 A+ ++ ++++ L A + ++ + + D G +DGV+ DLGVSS+Q+D +RGF+ Sbjct: 73 ALDLSGARLKPFEDRTDLVHAVYDEITEVLDDLGFESIDGVLMDLGVSSLQLDEAERGFA 132 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 + PLDMRM S G SA+DVVN + +L I+ GEEK A RIA+ IV R PF Sbjct: 133 YSYDAPLDMRMDTSRGQSAADVVNSYSETELVSIIRRWGEEKFAGRIANRIVAARAEKPF 192 Query: 186 QTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 T +L +I+K V + HPA R+FQALRI VN E+ L + + +A AL GG Sbjct: 193 AGTGELVEVIRKAVPAAAARTGGHPAKRTFQALRIEVNEELVVLERAVPAAVDALAIGGR 252 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 +V+S+HSLED++VKKFF++ + ++ +++TK VPT+ ++A N Sbjct: 253 AVVMSYHSLEDKIVKKFFSTGVTSSAPPGFPVELDSQKPELKTLTKGTEVPTEAEIAENP 312 Query: 305 RSRSAKLRA 313 R+ SA+LRA Sbjct: 313 RAASARLRA 321 >gi|118464814|ref|YP_881532.1| S-adenosyl-methyltransferase MraW [Mycobacterium avium 104] gi|263456513|sp|A0QF44|RSMH_MYCA1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|118166101|gb|ABK66998.1| S-adenosyl-methyltransferase MraW [Mycobacterium avium 104] Length = 335 Score = 198 bits (504), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 122/316 (38%), Positives = 180/316 (56%), Gaps = 18/316 (5%) Query: 20 HVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPF 69 HVPVLLE+ + LL PA G V+LDAT GAGG++ F G +IALDRDP Sbjct: 10 HVPVLLERCVELLTPALTRRHPDGSGAVLLDATLGAGGHAERFLTDLPGLRLIALDRDPS 69 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQL------QDYVPDKGVDGVVFDLGVSSMQIDCGDR 123 A+ +E + + ++ +L + + Y + VDG++FDLGVSSMQ+D +R Sbjct: 70 ALEIARERLARFADRITLVHTRYDGIAAALTESGYAATESVDGILFDLGVSSMQLDRPER 129 Query: 124 GFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GF++ + PLDMRM S ++A+D++N + +L IL GEE+ A RIA IV+RR Sbjct: 130 GFAYAQDAPLDMRMDPGSPLTAADILNTYDEAELADILHRYGEERFARRIAAQIVRRRAK 189 Query: 183 APFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 PF +T DL SL+ + + ++ HPA R+FQALRI VN+E++ L L +A AL Sbjct: 190 EPFTSTADLVSLLYQAIPAPARRTGGHPAKRTFQALRIAVNDELDTLRCALPAALDALAV 249 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 G ++V+++ SLEDR+VK+ FA V + H F+++T ++ Sbjct: 250 DGRIVVLAYQSLEDRIVKRLFAQAVASRTPVDLPVELPGHEPRFRALTHGAGRADAAEIE 309 Query: 302 FNRRSRSAKLRAGMRT 317 N RS + +LRA RT Sbjct: 310 RNPRSAAVRLRALQRT 325 >gi|222053873|ref|YP_002536235.1| S-adenosyl-methyltransferase MraW [Geobacter sp. FRC-32] gi|263455960|sp|B9M164|RSMH_GEOSF RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|221563162|gb|ACM19134.1| S-adenosyl-methyltransferase MraW [Geobacter sp. FRC-32] Length = 312 Score = 198 bits (504), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 123/305 (40%), Positives = 179/305 (58%), Gaps = 13/305 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 HV VL +VIA L P PG + +D T G G++R + + +I D+D A++ E Sbjct: 6 HVSVLPAEVIAYLAPRPGGIYVDGTLGGAGHARLILEASAPDGLLIGFDQDGQALASAGE 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + ++ L + F+ L++ + + G+ DG + D+GVSS Q+D +RGFSFQ PL Sbjct: 66 RLAPFGKRVVLVKRNFAFLEEALAEIGIEAIDGFLLDVGVSSHQLDTVERGFSFQHDAPL 125 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S +A+++VN + +DL R++ GEE+ A RIA I+KRR+ P TT L Sbjct: 126 DMRMDLSAETTAAELVNTLSEEDLCRVIREYGEERWAKRIAAFIIKRREETPIATTLQLV 185 Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ V + R+HPATR+FQALRI VN+E+ L +GL + LK GG +V+SFH Sbjct: 186 DVIKAAVPKGAWEVRLHPATRTFQALRIAVNDELASLEKGLSGGVRLLKKGGRGVVISFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP---SNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SLEDR+ K F S + R IP P V + +T K VV + +V+ N RSRS Sbjct: 246 SLEDRIAKTTFRSLAQGCKCPRE-IPRCVCGNLPQV-KVLTGKPVVANEVEVSSNPRSRS 303 Query: 309 AKLRA 313 A+LRA Sbjct: 304 ARLRA 308 >gi|15642406|ref|NP_232039.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121587636|ref|ZP_01677400.1| conserved hypothetical protein [Vibrio cholerae 2740-80] gi|153818411|ref|ZP_01971078.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] gi|153822223|ref|ZP_01974890.1| conserved hypothetical protein [Vibrio cholerae B33] gi|227082532|ref|YP_002811083.1| S-adenosyl-methyltransferase mraW [Vibrio cholerae M66-2] gi|229507529|ref|ZP_04397034.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae BX 330286] gi|229512275|ref|ZP_04401754.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae B33] gi|229519411|ref|ZP_04408854.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae RC9] gi|229607035|ref|YP_002877683.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae MJ-1236] gi|254849531|ref|ZP_05238881.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Vibrio cholerae MO10] gi|255746918|ref|ZP_05420863.1| S-adenosyl-methyltransferase MraW [Vibrio cholera CIRS 101] gi|262161539|ref|ZP_06030649.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae INDRE 91/1] gi|298500231|ref|ZP_07010036.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae MAK 757] gi|20139220|sp|Q9KPF9|RSMH_VIBCH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263504940|sp|C3LQV4|RSMH_VIBCM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|9656982|gb|AAF95552.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548146|gb|EAX58219.1| conserved hypothetical protein [Vibrio cholerae 2740-80] gi|126511044|gb|EAZ73638.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] gi|126520233|gb|EAZ77456.1| conserved hypothetical protein [Vibrio cholerae B33] gi|227010420|gb|ACP06632.1| S-adenosyl-methyltransferase mraW [Vibrio cholerae M66-2] gi|229344100|gb|EEO09075.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae RC9] gi|229352240|gb|EEO17181.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae B33] gi|229355034|gb|EEO19955.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae BX 330286] gi|229369690|gb|ACQ60113.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae MJ-1236] gi|254845236|gb|EET23650.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Vibrio cholerae MO10] gi|255735320|gb|EET90720.1| S-adenosyl-methyltransferase MraW [Vibrio cholera CIRS 101] gi|262028850|gb|EEY47504.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae INDRE 91/1] gi|297540924|gb|EFH76978.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae MAK 757] Length = 316 Score = 198 bits (504), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 124/309 (40%), Positives = 175/309 (56%), Gaps = 20/309 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H+ VLL + I L P + +D TFG GG+SR+ ++G + ++DRDP A++ Q+ Sbjct: 7 HISVLLNESIEGLAIKPDGIYIDGTFGRGGHSRTILAQLGPEGRLYSIDRDPQAIAEAQK 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +F++ FS + +Y VDGV+FDLGVSS Q+D +RGFSF K GP Sbjct: 67 I---DDPRFTIVHGPFSGIAEYAQRYDLVGKVDGVLFDLGVSSPQLDDAERGFSFMKDGP 123 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---PFQTT 188 LDMRM SG+ S + QA++ D+T ++ GE+K A RIA AIV+ R++ P T Sbjct: 124 LDMRMDPTSGMPVSAWLAQADLDDITWVIREFGEDKHARRIAKAIVEYRENELNEPLTRT 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ LI S + HPATR+FQA RI++N+E+EE+ LR A L G L V+ Sbjct: 184 SQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALRGASDILAPQGRLSVI 243 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSN-----AHPAVFQSITKKVVVPTQEDVAFN 303 SFHSLEDR+VK+F S + V H IP A + K + P+ ++V N Sbjct: 244 SFHSLEDRMVKRFMRKES-QGPQVPHGIPLTQDQIRALGSAKMKTVGKALKPSDQEVELN 302 Query: 304 RRSRSAKLR 312 RSRS+ LR Sbjct: 303 PRSRSSVLR 311 >gi|315443914|ref|YP_004076793.1| S-adenosyl-methyltransferase MraW [Mycobacterium sp. Spyr1] gi|315262217|gb|ADT98958.1| S-adenosyl-methyltransferase MraW [Mycobacterium sp. Spyr1] Length = 353 Score = 198 bits (504), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 120/304 (39%), Positives = 174/304 (57%), Gaps = 10/304 (3%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCG 74 HVPVLL++ + LL PA G ++DAT GAGG+S F G +I LDRDP A+ Sbjct: 43 HVPVLLDRCVELLAPALTREGATLVDATLGAGGHSERFLTDFPGLRLIGLDRDPDALRIA 102 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E + + ++ +L + + + D V D VD ++FDLGVSSMQ+D +RGFS+ Sbjct: 103 GERLAPFADRITLVRTRYDGIADAVRDAAGGSVDAILFDLGVSSMQLDRVERGFSYSTDA 162 Query: 132 PLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S + ++A+ V+N + + L R+L GEEK A RIA IV+RR PF TT + Sbjct: 163 PLDMRMDSGADLTAAQVLNSYDERALARVLREYGEEKFAGRIAAFIVRRRAVTPFTTTGE 222 Query: 191 LSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L L+ + ++ HPA R+FQALRI VN E+E L + +A +AL+ G L V++ Sbjct: 223 LVELLYDAIPAPARRTGGHPAKRTFQALRIEVNAELESLRSAIPAALQALRPHGRLAVMA 282 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 + SLEDR+VK FA+ + + H F ++T+ E++ N RS Sbjct: 283 YQSLEDRIVKTAFAAATASRTPPGLPVELPGHGPEFVALTRGAERADAEEIERNPRSAPV 342 Query: 310 KLRA 313 +LRA Sbjct: 343 RLRA 346 >gi|312373365|gb|EFR21121.1| hypothetical protein AND_17511 [Anopheles darlingi] Length = 384 Score = 198 bits (504), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 125/345 (36%), Positives = 182/345 (52%), Gaps = 48/345 (13%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF--CKMGSNVIALDRDPFAVSCGQET 77 H PV+ + + L P + +D TFGAGG+SR+ G+ +IALDRDP A E Sbjct: 38 HRPVMAGETVRFLEPQNNQTFIDMTFGAGGHSRALLGAAPGATIIALDRDPHAHRLACEM 97 Query: 78 MRDYKEQFSLFQATFSQL--------QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 +Y + +FS+L + Y + +DG++FD G SSMQ D RGFS Sbjct: 98 ATEYPGRILPVLGSFSELPSLLRTLPEGYGRQRFIDGIIFDFGCSSMQFDEAARGFSIAH 157 Query: 130 SGPLDMRMS---C-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP- 184 GPLDMRM C +SA++V+ + +DL RIL + GEEKQA +IA AIV R + Sbjct: 158 DGPLDMRMDKDRCPEQLSAAEVLARVQEQDLARILKVYGEEKQAKKIARAIVNARFTVKR 217 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHP--------------------ATRSFQALRIFVNNE 224 +TT +L+S++ + ++ P AT++FQALRIFVNNE Sbjct: 218 IETTAELASIVAHCLSSNQATETGPVSSASSFEYRQDKLRRPAHVATKTFQALRIFVNNE 277 Query: 225 IEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV 284 + E+ G+ A+ L+ GG L+ ++FHSLED +VK+ +A R + +H Sbjct: 278 LNEINYGMVLAKHLLRTGGKLVTIAFHSLEDTIVKRHLTGHVVDDVASRVPLQFISHTLA 337 Query: 285 -------------FQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 ++ +TK VVVP++ +V N RSRSAKLRA +R Sbjct: 338 HENDTMQEMMKPNWRQLTKHVVVPSEAEVTANPRSRSAKLRAAVR 382 >gi|258620868|ref|ZP_05715902.1| S-adenosyl-methyltransferase mraW [Vibrio mimicus VM573] gi|258586256|gb|EEW10971.1| S-adenosyl-methyltransferase mraW [Vibrio mimicus VM573] Length = 316 Score = 198 bits (504), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 124/309 (40%), Positives = 174/309 (56%), Gaps = 20/309 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H+ VLL + I L P + +D TFG GG+SR+ ++G + ++DRDP A++ Q Sbjct: 7 HISVLLNESIEGLAIKPDGIYIDGTFGRGGHSRTILAQLGPQGRLYSIDRDPQAIAEAQN 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +F++ FS + +Y VDGV+FDLGVSS Q+D +RGFSF K GP Sbjct: 67 I---DDPRFTIIHGPFSGIAEYAQRYDLVGKVDGVLFDLGVSSPQLDDAERGFSFMKDGP 123 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---PFQTT 188 LDMRM SG+ S + QA++ D+T ++ GE+K A RIA AIV+ R++ P T Sbjct: 124 LDMRMDPTSGMPVSAWLAQADLDDITWVIREFGEDKHARRIAKAIVEYRENELNEPLTRT 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ LI S + HPATR+FQA RI++N+E+EE+ LR A L G L V+ Sbjct: 184 SQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALRGASDILAPQGRLSVI 243 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSN-----AHPAVFQSITKKVVVPTQEDVAFN 303 SFHSLEDR+VK+F S + V H IP A + K + P+ ++V N Sbjct: 244 SFHSLEDRMVKRFMRKES-QGPEVPHGIPLTQDQIRALGSAKMKTVGKALKPSDQEVELN 302 Query: 304 RRSRSAKLR 312 RSRS+ LR Sbjct: 303 PRSRSSVLR 311 >gi|254774999|ref|ZP_05216515.1| S-adenosyl-methyltransferase MraW [Mycobacterium avium subsp. avium ATCC 25291] Length = 334 Score = 198 bits (504), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 122/316 (38%), Positives = 180/316 (56%), Gaps = 18/316 (5%) Query: 20 HVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPF 69 HVPVLLE+ + LL PA G V+LDAT GAGG++ F G +IALDRDP Sbjct: 10 HVPVLLERCVELLTPALTRRHPDGSGAVLLDATLGAGGHAERFLTDLPGLRLIALDRDPS 69 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQL------QDYVPDKGVDGVVFDLGVSSMQIDCGDR 123 A+ +E + + ++ +L + + Y + VDG++FDLGVSSMQ+D +R Sbjct: 70 ALEIARERLARFADRITLVHTRYDGIAAALTESGYAATESVDGILFDLGVSSMQLDRPER 129 Query: 124 GFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GF++ + PLDMRM S ++A+D++N + +L IL GEE+ A RIA IV+RR Sbjct: 130 GFAYAQDAPLDMRMDPGSPLTAADILNTYDEAELADILHRYGEERFARRIAAQIVRRRAK 189 Query: 183 APFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 PF +T DL SL+ + + ++ HPA R+FQALRI VN+E++ L L +A AL Sbjct: 190 EPFTSTADLVSLLYQAIPAPARRTGGHPAKRTFQALRIAVNDELDTLRCALPAALDALAV 249 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 G ++V+++ SLEDR+VK+ FA V + H F+++T ++ Sbjct: 250 DGRIVVLAYQSLEDRIVKRLFAQAVASRTPVDLPVELPGHEPRFRALTHGAGRADAAEIE 309 Query: 302 FNRRSRSAKLRAGMRT 317 N RS + +LRA RT Sbjct: 310 RNPRSAAVRLRALQRT 325 >gi|254362469|ref|ZP_04978577.1| S-adenosylmethionine-dependent methyltransferase [Mannheimia haemolytica PHL213] gi|153094061|gb|EDN74973.1| S-adenosylmethionine-dependent methyltransferase [Mannheimia haemolytica PHL213] Length = 312 Score = 198 bits (504), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 125/311 (40%), Positives = 179/311 (57%), Gaps = 28/311 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQE 76 H+ VLL + + L P + +D TFG GG+SR K+G N +IA DRDP A++ Q Sbjct: 7 HITVLLHEAVDGLAIKPNGIYIDGTFGRGGHSRLILSKLGENGRLIATDRDPRAIAEAQ- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 T+ D + F + FS + + G +DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 66 TISDPR--FQIEHTAFSAIPELCERMGLVGKIDGILLDLGVSSPQLDEAERGFSFMRDGP 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA--PFQTTQ 189 LDMRM + G+SA++ + Q + +DL +L GEE+ A RIA A+V +SA T Sbjct: 124 LDMRMDTTKGLSAAEWLAQVSAEDLAWVLKEFGEERFAKRIAQAVVSYNKSANEKISRTL 183 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I V F K+ HPATRSFQA+RIF+N E++EL + L SA L G L ++S Sbjct: 184 QLAQIIADAVPF-KDKHKHPATRSFQAIRIFINGELDELEKALNSALTVLAPEGRLSIIS 242 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK--------KVVVPTQEDVA 301 FHSLEDR+VK+F S + R + P + +TK K ++P++ ++ Sbjct: 243 FHSLEDRMVKQFVRKHSKGMDVPRGL------PILEAELTKNIPLKTIGKAIMPSEAEIE 296 Query: 302 FNRRSRSAKLR 312 N RSRSA LR Sbjct: 297 ANARSRSAVLR 307 >gi|145595735|ref|YP_001160032.1| S-adenosyl-methyltransferase MraW [Salinispora tropica CNB-440] gi|262826474|sp|A4X9S3|RSMH_SALTO RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|145305072|gb|ABP55654.1| S-adenosyl-methyltransferase MraW [Salinispora tropica CNB-440] Length = 371 Score = 198 bits (504), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 118/313 (37%), Positives = 180/313 (57%), Gaps = 14/313 (4%) Query: 18 GDHVPVLLEKVIALLNPAPGK-------VILDATFGAGGYSRSFCKMGSN--VIALDRDP 68 G HVPVLLE+ + LL+PA + V +DAT G GG++ + ++ LDRD Sbjct: 6 GAHVPVLLERCLELLSPALDRTGQTGRTVYVDATLGLGGHAEAILTAHPRTMLVGLDRDT 65 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGF 125 A++ + + + ++ L A + +L D + G VDG++FDLGVSS+Q+D DRGF Sbjct: 66 EALAHARVRLARFADRVHLEHAVYDELPDVLDRIGHPVVDGILFDLGVSSLQLDAPDRGF 125 Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 ++ + PLDMRM S G++A +VVN + +L R+L + GEEK ASRIA AIV+ R AP Sbjct: 126 AYAQDAPLDMRMDQSRGVTAEEVVNSYSHPELARVLRVYGEEKFASRIASAIVRERDRAP 185 Query: 185 FQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 ++ L+ L+++ + ++ HPA R+FQALRI VN E+ L L +A L G Sbjct: 186 ITSSAQLAELVRQAIPAPARRTGGHPAKRTFQALRIEVNRELAALETALPAALDRLAIEG 245 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 ++V+S+HSLEDRL K A R + + F+ +++ +P + +VA N Sbjct: 246 RMVVLSYHSLEDRLTKVALADRVRSKGPIDLPVELPGTGPTFRLLSRGAELPGEAEVAVN 305 Query: 304 RRSRSAKLRAGMR 316 R+ S +LRA R Sbjct: 306 PRAASVRLRAAER 318 >gi|263460310|sp|A4TBF6|RSMH_MYCGI RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 317 Score = 198 bits (504), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 120/304 (39%), Positives = 174/304 (57%), Gaps = 10/304 (3%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCG 74 HVPVLL++ + LL PA G ++DAT GAGG+S F G +I LDRDP A+ Sbjct: 7 HVPVLLDRCVELLAPALTREGATLVDATLGAGGHSERFLTDFPGLRLIGLDRDPDALRIA 66 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E + + ++ +L + + + D V D VD ++FDLGVSSMQ+D +RGFS+ Sbjct: 67 GERLAPFADRITLVRTRYDGIADAVRDAAGGSVDAILFDLGVSSMQLDRVERGFSYSTDA 126 Query: 132 PLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S + ++A+ V+N + + L R+L GEEK A RIA IV+RR PF TT + Sbjct: 127 PLDMRMDSGADLTAAQVLNSYDERALARVLREYGEEKFAGRIAAFIVRRRAVTPFTTTGE 186 Query: 191 LSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L L+ + ++ HPA R+FQALRI VN E+E L + +A +AL+ G L V++ Sbjct: 187 LVELLYDAIPAPARRTGGHPAKRTFQALRIEVNAELESLRSAIPAALQALRPHGRLAVMA 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 + SLEDR+VK FA+ + + H F ++T+ E++ N RS Sbjct: 247 YQSLEDRIVKTAFAAATASRTPPGLPVELPGHGPEFVALTRGAERADAEEIERNPRSAPV 306 Query: 310 KLRA 313 +LRA Sbjct: 307 RLRA 310 >gi|326391684|ref|ZP_08213209.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter ethanolicus JW 200] gi|325992262|gb|EGD50729.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter ethanolicus JW 200] Length = 308 Score = 198 bits (504), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 117/305 (38%), Positives = 173/305 (56%), Gaps = 10/305 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77 H VLL++ I LN P + +D T G GG+S K +IA+DRD A+ +E Sbjct: 5 HKSVLLKETIEYLNIKPEGIYVDGTLGGGGHSEEILKRLTTGKLIAIDRDLDAIKASKER 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVP----DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +++YK F +++ + DK VDG++ DLGVSS Q++ +RGFS+ K PL Sbjct: 65 LKNYK-NVEYINDNFKNIKEILKSLDIDK-VDGILLDLGVSSYQLEEVERGFSYMKDAPL 122 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S SA DVVN+ + ++L R++ GEEK ASRIA I K R+ +TT L Sbjct: 123 DMRMDKNSPFSAYDVVNKYSQQELERVIREYGEEKWASRIAKFIAKEREKGEIKTTFQLV 182 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ V S + HPA R+FQA+RI VN E++ L + + + L+ G + +++FH Sbjct: 183 EIIKNAVPASARREGPHPAKRTFQAIRIEVNEELKGLDKAIEDMVEVLRGKGRIAIITFH 242 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+VK F +M + + + ITKK V+P++E++ N RSRSAKL Sbjct: 243 SLEDRIVKNTFKKLENPCTCPHNMPCTCGKEPLIKIITKKPVLPSKEEIETNSRSRSAKL 302 Query: 312 RAGMR 316 R + Sbjct: 303 RVAEK 307 >gi|319941799|ref|ZP_08016121.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Sutterella wadsworthensis 3_1_45B] gi|319804732|gb|EFW01599.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Sutterella wadsworthensis 3_1_45B] Length = 315 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 132/319 (41%), Positives = 183/319 (57%), Gaps = 23/319 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQE 76 H+PVL + L P + +D TFG GG+SR + +IA DRDP Sbjct: 6 HLPVLSREAPEALVARPDGLYVDGTFGRGGHSRLILERLAQQGRLIAFDRDP-EAVAAAA 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++D + F + A FS +++ + D G VDG+ D+GVSS QID RGFSF+ GPL Sbjct: 65 AIKDPR--FQIVHAPFSAMKERLGDLGIRQVDGIFLDIGVSSPQIDDPSRGFSFRFEGPL 122 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S G +A++ + +A+V+++ +L GEE+ A RIA AIV+ R AP TT L+ Sbjct: 123 DMRMDTSCGETAAEWLARASVEEIAEVLADFGEERFAHRIARAIVEARSRAPITTTGALA 182 Query: 193 SLIQKTVYFSKNNR---IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L++ V KN R HPATR+FQA+RI VN+E++EL L SA L G L V+S Sbjct: 183 KLVEAAV--PKNRRDAAQHPATRTFQAVRIQVNHELDELKTTLESAGALLAPAGRLAVIS 240 Query: 250 FHSLEDRLVKKFFASR--SGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDVAFNRR 305 FHSLEDR+VK+FF R + + R +P+ NA P I ++PT+ + N R Sbjct: 241 FHSLEDRIVKRFFEKRLHPDRDLDPRLPMPAGFNAQPWFCDVIR---ILPTKSEAESNPR 297 Query: 306 SRSAKLRAGMRTVERSIED 324 +RS+ LR G RT R ED Sbjct: 298 ARSSVLRVGTRTA-RLWED 315 >gi|256825484|ref|YP_003149444.1| S-adenosyl-methyltransferase MraW [Kytococcus sedentarius DSM 20547] gi|256688877|gb|ACV06679.1| S-adenosyl-methyltransferase MraW [Kytococcus sedentarius DSM 20547] Length = 335 Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 120/311 (38%), Positives = 178/311 (57%), Gaps = 15/311 (4%) Query: 20 HVPVLLEKVIALLNPA----PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73 HVPV+L +++ LL PA G V LD T G GG++ + + + V+ +DRDP A+ Sbjct: 15 HVPVMLPRILDLLAPALDGVDGAVHLDGTLGMGGHAEALLERFGHARVVGIDRDPQAIEL 74 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQKS 130 E + + +F T+ ++ + GVD ++FDLGVSS+Q+D RGFS+ ++ Sbjct: 75 ASERLARFGHRFVAHHGTYDEVGPALDRLGVDSAQSMLFDLGVSSLQLDEVGRGFSYSRN 134 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM+ + G SA+DV+N DL R+L GEE+ A +IA A+++ R++ PF + Sbjct: 135 APLDMRMNPTVGQSAADVLNTYGHGDLARVLKEYGEERFAGKIASAVLRERETEPFTDSA 194 Query: 190 DLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L L+++TV S+ HPA R+FQALRI VN+E+ A + A L GG L V+ Sbjct: 195 RLVELLERTVPAASQRTGGHPAKRTFQALRIEVNSELSIWATTVHRALDHLAVGGRLAVL 254 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITKKVVVPTQEDVAFNRRS 306 S+HSLEDRL K+ FA +G + +P H + T+ P + + A NRRS Sbjct: 255 SYHSLEDRLTKQAFA--AGATSSAPEGLPVELPEHAPWLRLATRGAEQPDEGERAVNRRS 312 Query: 307 RSAKLRAGMRT 317 SA+LR RT Sbjct: 313 SSARLRVAERT 323 >gi|240948415|ref|ZP_04752793.1| S-adenosyl-methyltransferase MraW [Actinobacillus minor NM305] gi|240297241|gb|EER47799.1| S-adenosyl-methyltransferase MraW [Actinobacillus minor NM305] Length = 314 Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 124/316 (39%), Positives = 180/316 (56%), Gaps = 20/316 (6%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALD 65 MS +H H+ VLL + + L P + +D TFG GG+SR S +IA D Sbjct: 1 MSDTLHK----HITVLLHEAVEGLAIKPNGIYIDGTFGRGGHSRLILSKLNEQGRLIATD 56 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCG 121 RDP A++ T+ D + F + FS + D +DG++ DLGVSS Q+D Sbjct: 57 RDPRAIAEAH-TITDPR--FQIIHTAFSAIPQVCEDLDLTGKIDGILLDLGVSSPQLDDA 113 Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK-- 178 +RGFSF + GPLDMRM S G+SA++ ++Q +++DLT +L GEE+ A RIA AIV Sbjct: 114 ERGFSFMRDGPLDMRMDTSKGLSAAEWLDQVSIEDLTWVLKEFGEERFAKRIATAIVNFN 173 Query: 179 RRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 + S T L+ +I V F K+ HPATRSFQA+RIF+N+E++EL + L SA Sbjct: 174 KTSSQKITRTLQLAQIISDAVPF-KDKHKHPATRSFQAIRIFINSELDELEKALNSALSV 232 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPT 296 L G L ++SFHSLEDR+VK+F S R + + ++ + + K ++P+ Sbjct: 233 LAPEGRLSIISFHSLEDRMVKQFMKKNSKGKEVPRGLPILEADLNKDIPLKTIGKAIMPS 292 Query: 297 QEDVAFNRRSRSAKLR 312 + ++ N RSRSA LR Sbjct: 293 EAEIEANPRSRSAVLR 308 >gi|195107446|ref|XP_001998323.1| GI23693 [Drosophila mojavensis] gi|193914917|gb|EDW13784.1| GI23693 [Drosophila mojavensis] Length = 362 Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 131/331 (39%), Positives = 185/331 (55%), Gaps = 37/331 (11%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77 HVPVL E I L P PG +D TFGAGG++R + V ALDRDP A Q Sbjct: 33 HVPVLCETAIEYLQPKPGGKYIDMTFGAGGHTRKLLDSCPETTVYALDRDPVAHQLAQRM 92 Query: 78 MRD--YKEQFSLFQATFSQLQDY-----VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 ++ Y+ + FS L VP + DG++FD G SSMQ D RGFS Sbjct: 93 SQEQNYEGRLIPMLGKFSDLPQLLQALDVPPRSFDGMLFDFGCSSMQFDEAARGFSIAHD 152 Query: 131 GPLDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP-FQT 187 GPLDMRM C G+SA+DV+ + DL RIL + GEEK A +IA AIV+ R + +T Sbjct: 153 GPLDMRMDCGRGGVSAADVLARIEEADLARILRVYGEEKAAKKIARAIVEARNALQRIET 212 Query: 188 TQDLSSLIQKTV-YFSKNNRI----HPATRSFQALRIFVNNEIEELAQGLRSA-EKALKA 241 T+ L+ L+ + + +++ H AT++FQALRIFVNNE+ E+ G+ A E L+A Sbjct: 213 TRQLADLVAAVLGEGHRRDKLQRPSHVATKTFQALRIFVNNELNEINYGMVLAQELLLRA 272 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVM-AVRHMIP--SNAH-----PAVFQS------ 287 G L+ ++FHSLED +VK+ +G V+ V + +P + H P + +S Sbjct: 273 QGRLVAITFHSLEDTIVKRHL---NGNVIEGVANPLPLKYSGHDLTHDPELMESFVRSNW 329 Query: 288 --ITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 + + V++P ++A N RSRSAKLRA ++ Sbjct: 330 RQLHRHVILPDASEIARNSRSRSAKLRAAVK 360 >gi|307266529|ref|ZP_07548062.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter wiegelii Rt8.B1] gi|306918448|gb|EFN48689.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter wiegelii Rt8.B1] Length = 308 Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 117/305 (38%), Positives = 173/305 (56%), Gaps = 10/305 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77 H VLL++ I LN P + +D T G GG+S K +IA+DRD A+ +E Sbjct: 5 HKSVLLKETIEYLNIKPEGIYVDGTLGGGGHSEEILKRLPTGKLIAIDRDLDAIKASKER 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVP----DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +++YK F +++ + DK VDG++ DLGVSS Q++ +RGFS+ K PL Sbjct: 65 LKNYK-NVEYINDNFKNIKEILKSLDIDK-VDGILLDLGVSSYQLEEVERGFSYMKDAPL 122 Query: 134 DMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S SA DVVN+ + ++L R++ GEEK ASRIA I K R+ +TT L Sbjct: 123 DMRMDKNSPFSAYDVVNKYSQQELERVIREYGEEKWASRIAKFIAKEREKGEIKTTFQLV 182 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ V S + HPA R+FQA+RI VN E++ L + + + L+ G + +++FH Sbjct: 183 EIIKNAVPASARREGPHPAKRTFQAIRIEVNEELKGLDKAIEDMVEVLRGKGRIAIITFH 242 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+VK F +M + + + ITKK V+P++E++ N RSRSAKL Sbjct: 243 SLEDRIVKNTFKKLENPCTCPHNMPCTCGKEPLIKIITKKPVLPSKEEIETNSRSRSAKL 302 Query: 312 RAGMR 316 R + Sbjct: 303 RVAEK 307 >gi|163841237|ref|YP_001625642.1| S-adenosyl-methyltransferase MraW [Renibacterium salmoninarum ATCC 33209] gi|162954713|gb|ABY24228.1| S-adenosyl-methyltransferase [Renibacterium salmoninarum ATCC 33209] Length = 382 Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 122/316 (38%), Positives = 183/316 (57%), Gaps = 15/316 (4%) Query: 20 HVPVLLEKVIALLNPA------PGK--VILDATFGAGGYSRSFCKMGSNV--IALDRDPF 69 HVPVL ++ + LL PA G+ V++DAT G GG+S + N+ I +DRD Sbjct: 64 HVPVLRDRCVNLLAPAIEAANLAGRRAVVVDATLGMGGHSEAMLTRFENLHLIGIDRDTQ 123 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFS 126 A+ ++ ++++ L A + ++ + + D G +DGV+ DLGVSS+Q+D +RGF+ Sbjct: 124 ALDLSGARLKPFEDRTDLVHAVYDEITEVLDDLGFESIDGVLMDLGVSSLQLDEAERGFA 183 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 + PLDMRM S G SA+DVVN + +L I+ GEEK A RIA+ IV R PF Sbjct: 184 YSYDAPLDMRMDTSRGQSAADVVNSYSETELVSIIRRWGEEKFAGRIANRIVAARAEKPF 243 Query: 186 QTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 T +L +I+K V + HPA R+FQALRI VN E+ L + + +A AL GG Sbjct: 244 AGTGELVEVIRKAVPAAAARTGGHPAKRTFQALRIEVNEELVVLERAVPAAVDALAIGGR 303 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 +V+S+HSLED++VKKFF++ + ++ +++TK VPT+ ++A N Sbjct: 304 AVVMSYHSLEDKIVKKFFSTGVTSSAPPGFPVELDSQKPELKTLTKGTEVPTEAEIAENP 363 Query: 305 RSRSAKLRAGMRTVER 320 R+ SA+LRA R R Sbjct: 364 RAASARLRAVERIRPR 379 >gi|167040640|ref|YP_001663625.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter sp. X514] gi|256752962|ref|ZP_05493788.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter ethanolicus CCSD1] gi|300914681|ref|ZP_07131997.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter sp. X561] gi|307724085|ref|YP_003903836.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter sp. X513] gi|262825863|sp|B0K3H8|RSMH_THEPX RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|166854880|gb|ABY93289.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter sp. X514] gi|256748157|gb|EEU61235.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter ethanolicus CCSD1] gi|300889616|gb|EFK84762.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter sp. X561] gi|307581146|gb|ADN54545.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter sp. X513] Length = 308 Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 117/305 (38%), Positives = 173/305 (56%), Gaps = 10/305 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77 H VLL++ I LN P + +D T G GG+S K +IA+DRD A+ +E Sbjct: 5 HKSVLLKETIEYLNIKPEGIYVDGTLGGGGHSEEILKRLTTGKLIAIDRDLDAIKASKER 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVP----DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +++YK F +++ + DK VDG++ DLGVSS Q++ RGFS+ K P+ Sbjct: 65 LKNYK-NVEYINDNFKNIKEILKSLNIDK-VDGILLDLGVSSYQLEEVKRGFSYMKDAPM 122 Query: 134 DMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S SA DVVN+ + ++L R++ GEEK ASRIA IVK R+ +TT L Sbjct: 123 DMRMDKNSPFSAYDVVNKYSQQELERVIREYGEEKWASRIAKFIVKEREKGEIKTTFQLV 182 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + S + HPA R+FQA+RI VN E++ L + + + L+ G + +++FH Sbjct: 183 EIIKNAIPASARREGPHPAKRTFQAIRIEVNEELKGLDKAIEDMVEVLRGKGRIAIITFH 242 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+VK F +M + V + ITKK V+P++E++ N RSRSAKL Sbjct: 243 SLEDRIVKNTFKKLENPCTCPPNMPCTCGKKPVVKIITKKPVLPSKEEIETNSRSRSAKL 302 Query: 312 RAGMR 316 R + Sbjct: 303 RVAEK 307 >gi|146310292|ref|YP_001175366.1| S-adenosyl-methyltransferase MraW [Enterobacter sp. 638] gi|263447009|sp|A4W6I5|RSMH_ENT38 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|145317168|gb|ABP59315.1| S-adenosyl-methyltransferase MraW [Enterobacter sp. 638] Length = 313 Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 122/310 (39%), Positives = 184/310 (59%), Gaps = 17/310 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + LN P + +D TFG GG+SR ++G+ ++A+DRDP A++ + Sbjct: 7 HTSVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGAEGRLLAIDRDPQAIAVAK- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 T+ D + FS FS L DYV ++ +DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 66 TIDDPR--FSFVHGPFSALADYVSERDLTGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G SA++ + A D+ ++ GEE+ RIA IV+R + P T++L Sbjct: 124 LDMRMDPTRGQSAAEWLLTAEEADIAWVIKTFGEERFGKRIARGIVERNRIEPMTRTKEL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ K+ HPATR+FQA+RI+VN+E+EE+ L+S+ L GG L ++SFH Sbjct: 184 AEVVTAATPV-KDKFKHPATRTFQAVRIWVNSELEEIELALKSSLGVLAPGGRLSIISFH 242 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHP--AVFQSITKKVVVPTQEDVAFNRRSR 307 SLEDR+VK+F SR +V A M + + K ++P +E+VA N R+R Sbjct: 243 SLEDRIVKRFMREQSRGPQVPAGLPMTEDQLRKLGGRYLRVLGK-MMPGEEEVAENPRAR 301 Query: 308 SAKLRAGMRT 317 S+ LR RT Sbjct: 302 SSVLRIAERT 311 >gi|94987539|ref|YP_595472.1| S-adenosyl-methyltransferase MraW [Lawsonia intracellularis PHE/MN1-00] gi|172046236|sp|Q1MPC6|RSMH_LAWIP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|94731788|emb|CAJ55151.1| predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Lawsonia intracellularis PHE/MN1-00] Length = 312 Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 115/310 (37%), Positives = 184/310 (59%), Gaps = 11/310 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H PV+LE+ IA+L P LD T G GG+S + + G+ + LD+D A++ + Sbjct: 2 HQPVMLEETIAMLKPHAKGRYLDGTVGLGGHSFAILQSAGDGAELCGLDQDKKALAIAEM 61 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 T++ +K++ L +S + G +DG + D+GVSS+Q+D +RGFSF GPL Sbjct: 62 TLKPFKKRVHLVHTKYSSFPLILKALGWKLLDGALIDIGVSSLQLDNAERGFSFLYDGPL 121 Query: 134 DMRMS--CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 DMRM + S ++VN++ + L I+ GEE QA+RIA AIV++R++ P TT++L Sbjct: 122 DMRMDQDANNNSLFEIVNKSRQEYLKDIISRYGEEPQANRIAKAIVQKRRTKPITTTKEL 181 Query: 192 SSLIQKT--VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 + LI++ + +R HPAT++FQA RI VN+E+ EL + L + GG + V+S Sbjct: 182 ADLIEQAYPAAWRAKSRHHPATKTFQAFRIVVNSELNELEKFLNMIMGWIAPGGRVAVIS 241 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK++ S + + ++ + H ITKK + P++++++ N RSRS Sbjct: 242 FHSLEDRIVKQYMKSWTRSCICPPYVPVCKCFHKPEAILITKKPIRPSEKEISENIRSRS 301 Query: 309 AKLRAGMRTV 318 AKLR + + Sbjct: 302 AKLRVAEKVL 311 >gi|251797883|ref|YP_003012614.1| S-adenosyl-methyltransferase MraW [Paenibacillus sp. JDR-2] gi|262824736|sp|C6D563|RSMH_PAESJ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|247545509|gb|ACT02528.1| S-adenosyl-methyltransferase MraW [Paenibacillus sp. JDR-2] Length = 316 Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 119/315 (37%), Positives = 178/315 (56%), Gaps = 29/315 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H+ VLLE+ + L PG + +D T G G+S G +IA D+D A+ + Sbjct: 4 HITVLLEEAVDGLAIKPGGIYVDCTLGGAGHSERIVSQLSGGGRLIAFDQDDAALDNARV 63 Query: 77 TMRDYKEQFSLFQATFSQLQ-----------DYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125 + Y ++ +L ++ F L+ D VP VDG++FDLGVSS Q+D +RGF Sbjct: 64 RLAPYMDRVTLVKSNFRYLEEMLLTCDVPTVDGVPQ--VDGILFDLGVSSPQLDEAERGF 121 Query: 126 SFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 S+ PLDMRM G ++A D+VN ++++RIL + GEEK A IA IV+ R++AP Sbjct: 122 SYNHDAPLDMRMDQGGALTAYDIVNSWEEREISRILHVYGEEKFARSIARKIVQARENAP 181 Query: 185 FQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 +TT +L+ L++ + ++ HPA RSFQALRI VN+E+ L A K ++ GG Sbjct: 182 IETTGELAELVKTGIPAAARRTGGHPAKRSFQALRIAVNDELGAEEDALEEAVKCIRPGG 241 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV------FQSITKKVVVPTQ 297 + V++FHSLEDR+ K+ FAS K P + V + + +K +VPT+ Sbjct: 242 RISVITFHSLEDRICKQLFASYVEKCTC-----PPDFPKCVCGGTGKLRLVNRKPIVPTE 296 Query: 298 EDVAFNRRSRSAKLR 312 +++ N RSRSAKLR Sbjct: 297 QELEVNPRSRSAKLR 311 >gi|119773487|ref|YP_926227.1| S-adenosyl-methyltransferase MraW [Shewanella amazonensis SB2B] gi|262826482|sp|A1S2F1|RSMH_SHEAM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|119765987|gb|ABL98557.1| methyltransferase [Shewanella amazonensis SB2B] Length = 313 Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 117/308 (37%), Positives = 179/308 (58%), Gaps = 15/308 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H+ VLL + + LN + +D TFG GG+SR ++G + +IA+DRDP A+ ++ Sbjct: 7 HLSVLLAETVDGLNIRADGIYIDGTFGRGGHSREVLSRLGVDGRLIAIDRDPQAIKAAEQ 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 D + F + F QL +YV + G +DGV+ DLGVSS Q+D +RGFSF + GP Sbjct: 67 FANDSR--FQIVHGGFGQLANYVEELGLVGKIDGVLLDLGVSSPQLDDAERGFSFLRDGP 124 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G +A+ + +A ++D+ + GEE+ A IA I R+ PF T+ L Sbjct: 125 LDMRMDNSQGETAAQWLARAEIEDMAWVFKTYGEERNARHIARCIAADREKTPFTRTKQL 184 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI + + N+ HPATR FQA+RI++N+E+E++ Q L A K L G L ++SFH Sbjct: 185 ADLIARVAKSKERNK-HPATRVFQAIRIYINSELEQIDQALEGALKVLAPHGRLSIISFH 243 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSI--TKKVVVPTQEDVAFNRRSRS 308 SLEDR+VK+F R + + H +P + A +++ K + P+ ++ N R+RS Sbjct: 244 SLEDRIVKRFI-RRHSQGEELPHGLPVTEAQLNKSRTLMPVGKAMKPSDVEIEQNARARS 302 Query: 309 AKLRAGMR 316 + LR R Sbjct: 303 SVLRVAER 310 >gi|290476461|ref|YP_003469366.1| S-adenosyl-dependent methyl transferase [Xenorhabdus bovienii SS-2004] gi|289175799|emb|CBJ82602.1| S-adenosyl-dependent methyl transferase [Xenorhabdus bovienii SS-2004] Length = 314 Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 121/306 (39%), Positives = 182/306 (59%), Gaps = 19/306 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + LN + +D TFG GG+SR ++G++ +IA+DRDP A+ + Sbjct: 8 HTSVLLDEAVNGLNIRENGIYIDGTFGRGGHSRLILSQLGADGRLIAIDRDPQAIEAAKA 67 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +FS+ FS+L Y+ + G +DGV+ DLGVSS Q+D +RGFSF + GP Sbjct: 68 IT---DPRFSITHGPFSELATYIEEAGLVGKIDGVLLDLGVSSPQLDDPERGFSFMRDGP 124 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G SA++ + +A D+ +L GEE+ A RIA AIV R Q T++L Sbjct: 125 LDMRMDPTRGQSATEWLMKAEADDIAWVLKTFGEERFAKRIARAIVARNQEGQITRTREL 184 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI + + ++ HPATRSFQA+RI++N+E+EE+ + L A + L G L V+SFH Sbjct: 185 AELIAQASPVKEKHK-HPATRSFQAIRIYINSELEEIERALNGALQVLAPQGRLSVISFH 243 Query: 252 SLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306 SLEDR+VK+F SR +V A + + +SI K + P++++V N R+ Sbjct: 244 SLEDRIVKRFIRQHSRGPQVPAGLPLTETQLKAQGGRSLKSIGK--LKPSEDEVVINPRA 301 Query: 307 RSAKLR 312 RS+ LR Sbjct: 302 RSSVLR 307 >gi|299533126|ref|ZP_07046511.1| S-adenosyl-methyltransferase MraW [Comamonas testosteroni S44] gi|298718903|gb|EFI59875.1| S-adenosyl-methyltransferase MraW [Comamonas testosteroni S44] Length = 309 Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 130/307 (42%), Positives = 182/307 (59%), Gaps = 17/307 (5%) Query: 20 HVPVLL-EKVIALLNPA---PGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVS 72 H+ VLL E V ALL A P +DATFG GG+SR ++G + +IA D+DP A++ Sbjct: 7 HITVLLDEAVDALLGGAAKPPAGQWVDATFGRGGHSRLILQRLGPDGRLIAFDKDPDAIA 66 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E R +FS+ F L + +P+ V GV+ DLGVSS QID DRGFSF+ GP Sbjct: 67 ---EAARITDARFSIRHEGFRHLGE-LPEGSVQGVLMDLGVSSPQIDNPDRGFSFRFDGP 122 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQTTQD 190 LDMRM + G S ++ + A V+ + ++ GEE+ A IA AIV RR+S P +TT + Sbjct: 123 LDMRMDTTRGQSVAEWLEDAEVQQIAEVIRDYGEERFAGPIAKAIVARRESQGPLRTTAE 182 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ L+ V + + +PATR+FQALRIF+N E++EL Q L ++ + L GG L V+SF Sbjct: 183 LAQLVAGAVKTREAGQ-NPATRTFQALRIFINAELQELEQALEASLRVLAPGGRLAVISF 241 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDR+VK+F A S ++ R A P + + + P+ +V N RSRSA Sbjct: 242 HSLEDRIVKQFIAKHSKEIYDRRAPF---APPTPMRLKALERIKPSAAEVDANPRSRSAV 298 Query: 311 LRAGMRT 317 +R RT Sbjct: 299 MRVAERT 305 >gi|258514333|ref|YP_003190555.1| S-adenosyl-methyltransferase MraW [Desulfotomaculum acetoxidans DSM 771] gi|257778038|gb|ACV61932.1| S-adenosyl-methyltransferase MraW [Desulfotomaculum acetoxidans DSM 771] Length = 311 Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 122/306 (39%), Positives = 175/306 (57%), Gaps = 9/306 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H PV+L +VI LN PG + +D T G G+S + + +I LD+DP A++ E Sbjct: 5 HKPVMLAEVIDGLNIRPGGIYVDCTLGGAGHSSAIAQKLDGRGLLIGLDQDPEALAAASE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + Y FS++ + + VDG+++DLGVSS Q+D RGFS+ PL Sbjct: 65 RLAVYGALVKTVGRNFSEIASVLSSLNIESVDGILYDLGVSSYQLDNPSRGFSYMHEAPL 124 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ SGI+A D+VN + + L I+ GEE+ ASRIA I++ R+ TT L Sbjct: 125 DMRMNPQSGITAGDLVNSLSQEKLAEIIQSYGEERWASRIAGFIIEERRHKNICTTGQLV 184 Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+K + ++ + HPA R+FQALRI VN E+E L Q LR K L+ GG + V++FH Sbjct: 185 QIIKKAIPAGARRDGPHPAKRTFQALRIAVNRELEILQQALRDGIKFLRTGGRICVITFH 244 Query: 252 SLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDRLVK+ F S + G + R + + IT K +VPT+ ++ N R+RSAK Sbjct: 245 SLEDRLVKEVFKSVAKGCICPPRLPVCLCGKQKELKIITGKPLVPTETELKDNPRARSAK 304 Query: 311 LRAGMR 316 LR R Sbjct: 305 LRIAER 310 >gi|225850230|ref|YP_002730464.1| S-adenosyl-methyltransferase MraW [Persephonella marina EX-H1] gi|262824804|sp|C0QP68|RSMH_PERMH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|225646628|gb|ACO04814.1| S-adenosyl-methyltransferase MraW [Persephonella marina EX-H1] Length = 293 Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 119/306 (38%), Positives = 176/306 (57%), Gaps = 24/306 (7%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76 +H PVL +V++ G+ I+DAT G GG+S K + +I +D+D +A+ +E Sbjct: 3 EHYPVLHREVLSFFKNIKGRYIVDATVGGGGHSFLLLKNLPETFLIGIDKDDYALEKAEE 62 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + +K +F L + +F + V K V GV+FDLGVS+ Q+ +RGFSFQ+ PL Sbjct: 63 KLSPFKGRFRLIKGSFKDIDTIVHSMDIKYVSGVLFDLGVSTFQLKT-ERGFSFQREEPL 121 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM +A DVVN+ +L +I+ GEEK A RIA AIV+ R+ +TT++L+ Sbjct: 122 DMRMDRTQKKTAFDVVNRYTKIELEKIIKDYGEEKFARRIASAIVEARKKKRIETTKELA 181 Query: 193 SLIQKTVYFS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 ++ VY + RIHPAT++FQA+RI VNNE+EE+ +G+ L+ GG++ V+SF Sbjct: 182 QIVY-NVYPPPLRRGRIHPATKTFQAIRIEVNNELEEIKEGVNKGIDLLEKGGIIAVISF 240 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDR+VK + R + +TKK + P E++ N SRSAK Sbjct: 241 HSLEDRIVKNIYRERK--------------RLKDIEILTKKPITPGTEEIRENPPSRSAK 286 Query: 311 LRAGMR 316 LR R Sbjct: 287 LRVAKR 292 >gi|263506479|sp|B0U504|RSMH_XYLFM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 313 Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 116/301 (38%), Positives = 170/301 (56%), Gaps = 10/301 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HVPVL + + L LD TFG GG++R + G ++ +D+DP A++ + Sbjct: 3 HVPVLYTQAMEGLRVVENGTYLDGTFGRGGHARGVLQQLGPGGRLLVMDKDPEAIAMAER 62 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + + +F+ L + +DGV+FDLGVSS Q+D +RGFSF K GPLDMR Sbjct: 63 VF-SCDPRVVIRHGSFALLAQLAAPQSLDGVLFDLGVSSPQLDVPERGFSFAKDGPLDMR 121 Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M G SA+ + + + +++ +L GEEKQ+ RIA AIV R + P T L+ LI Sbjct: 122 MDPEMGESAAQWLARVSEREIAEVLWTYGEEKQSRRIARAIVAYRANQPLLRTVQLAELI 181 Query: 196 QKTVYFSKN----NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +K+ +RIHPATRSFQ +RI VN E+ +L GL +A AL+ GG L+V+SFH Sbjct: 182 ASVMLRTKSGACKSRIHPATRSFQGIRIHVNRELVDLEVGLEAALAALRPGGRLVVISFH 241 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+VK+F SR KV +P + + + ++++ N R+RSA L Sbjct: 242 SLEDRIVKQFI-SRHAKVPPTNRRLPEVQTFVPLLRMIGRAIKADEDELEVNPRARSAVL 300 Query: 312 R 312 R Sbjct: 301 R 301 >gi|327484905|gb|AEA79312.1| rRNA small subunit methyltransferase H [Vibrio cholerae LMA3894-4] Length = 316 Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 123/309 (39%), Positives = 175/309 (56%), Gaps = 20/309 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H+ VLL + I L P + +D TFG GG+SR+ ++G + ++DRDP A++ Q+ Sbjct: 7 HISVLLNESIEGLAIKPDGIYIDGTFGRGGHSRTILAQLGPEGRLYSIDRDPQAIAEAQK 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +F++ FS + +Y VDGV+FDLGVSS Q+D +RGFSF K GP Sbjct: 67 I---DDPRFTIIHGPFSGIAEYAQRYDLVGKVDGVLFDLGVSSPQLDDAERGFSFMKDGP 123 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---PFQTT 188 LDMRM SG+ S + QA++ D+T ++ GE+K A RIA AIV+ R++ P T Sbjct: 124 LDMRMDPTSGMPVSAWLAQADLDDITWVIREFGEDKHARRIAKAIVEYRENELNEPLTRT 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ LI S + HPATR+FQA RI++N+E+EE+ LR A L G L V+ Sbjct: 184 SQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALRGASDILAPQGRLSVI 243 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSN-----AHPAVFQSITKKVVVPTQEDVAFN 303 SFHSLEDR+VK+F S + V H +P A + K + P+ ++V N Sbjct: 244 SFHSLEDRMVKRFMRKES-QGPEVPHGLPLTQEQIRALGSAKMKTVGKALKPSDQEVELN 302 Query: 304 RRSRSAKLR 312 RSRS+ LR Sbjct: 303 PRSRSSVLR 311 >gi|223041547|ref|ZP_03611748.1| S-adenosyl-methyltransferase MraW [Actinobacillus minor 202] gi|223017642|gb|EEF16052.1| S-adenosyl-methyltransferase MraW [Actinobacillus minor 202] Length = 314 Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 124/316 (39%), Positives = 183/316 (57%), Gaps = 20/316 (6%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALD 65 MS +H H+ VLL + + L P + +D TFG GG+SR S +IA D Sbjct: 1 MSDTLHK----HITVLLHEAVEGLAIKPNGIYIDGTFGRGGHSRLILSKLNEQGRLIATD 56 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCG 121 RDP A++ T+ D + F + FS + D G +DG++ DLGVSS Q+D Sbjct: 57 RDPRAIAEAH-TITDPR--FQIVHTAFSAIPQVCEDLGLIGKIDGILLDLGVSSPQLDDA 113 Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF + GPLDMRM S G+SA++ ++Q +V+DL +L GEE+ A RIA AIV Sbjct: 114 ERGFSFMRDGPLDMRMDTSKGLSAAEWLDQVSVEDLAWVLKEFGEERFAKRIATAIVNFN 173 Query: 181 QSAPFQTTQ--DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 +++ + T+ L+ +I V F K+ HPATRSFQA+RIF+N+E++EL + L SA Sbjct: 174 KTSGQKITRTLQLAQIISDAVPF-KDKHKHPATRSFQAIRIFINSELDELEKALNSALSV 232 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPT 296 L G L ++SFHSLEDR+VK+F S R + + ++ + + K ++P+ Sbjct: 233 LAPEGRLSIISFHSLEDRMVKQFMKKNSKGKEVPRGLPILEADLNKDIPLKTIGKAIMPS 292 Query: 297 QEDVAFNRRSRSAKLR 312 + ++ N RSRSA LR Sbjct: 293 EAEIEANPRSRSAVLR 308 >gi|319778491|ref|YP_004129404.1| rRNA small subunit methyltransferase H [Taylorella equigenitalis MCE9] gi|317108515|gb|ADU91261.1| rRNA small subunit methyltransferase H [Taylorella equigenitalis MCE9] Length = 288 Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 116/288 (40%), Positives = 173/288 (60%), Gaps = 19/288 (6%) Query: 41 LDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD 97 +D TFG GG+SR S S ++ D+DP A+ E+++ + + FS + D Sbjct: 3 VDGTFGRGGHSRYLLSLLDKNSKLVVFDKDPMAIEAA-ESLKKEDGRVLVVHGAFSTMSD 61 Query: 98 YVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANV 153 + D G VDG+ DLG+SS QID G RGFSF + GPLDMRM S G++A++ + A+V Sbjct: 62 VLSDFGITKVDGITMDLGISSPQIDDGTRGFSFMRDGPLDMRMDNSKGLTAAEWLASADV 121 Query: 154 KDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRS 213 + + +++ GEE+ A +IA AI RR+ P +TT +L+ LI V + + HPATR+ Sbjct: 122 ELIAKVIKEYGEERFAFQIAKAIASRREHNPIRTTHELAELIAANVRTREKGQ-HPATRT 180 Query: 214 FQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKV---- 269 FQA+RI++N E+EEL++ L SA + LK GG L V+SFHSLEDR+VK+F A S Sbjct: 181 FQAIRIYINEELEELSRSLTSAIELLKVGGRLSVISFHSLEDRIVKQFIAKESNPASEFA 240 Query: 270 -MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 + +R + + +S+ K + T++++ N RSRSA LR R Sbjct: 241 RLPIREV---DMPKGNLKSLGK--LTATEDEILKNPRSRSAILRVAER 283 >gi|149190159|ref|ZP_01868435.1| S-adenosyl-methyltransferase MraW [Vibrio shilonii AK1] gi|148836048|gb|EDL53009.1| S-adenosyl-methyltransferase MraW [Vibrio shilonii AK1] Length = 316 Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 125/310 (40%), Positives = 174/310 (56%), Gaps = 22/310 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H+ VLL + I L P + +D TFG GG+SR ++G N + ++DRDP A+ +E Sbjct: 7 HISVLLHESIDGLAIKPDGIYIDGTFGRGGHSRQILSQLGENGRLYSIDRDPQAI---EE 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F++ FS + +Y VDGV+ DLGVSS Q+D +RGFSF K GP Sbjct: 64 AGKIDDPRFTIIHGPFSGMAEYAERYDLVGKVDGVLLDLGVSSPQLDDAERGFSFMKDGP 123 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---PFQTT 188 LDMRM SG+ S+ + QA + D+T ++ GE+K A RIA AIV R+ P T Sbjct: 124 LDMRMDPTSGMPVSEWLAQAELDDITWVIREFGEDKHARRIAKAIVAHREDEEKEPLTRT 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ LI S + HPATRSFQA RI++N+E+EE+ L+ A L G L V+ Sbjct: 184 GQLAKLISDAAPKSFKEKKHPATRSFQAFRIYINSELEEIDTALKGAASILAPEGRLSVI 243 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH------PAVFQSITKKVVVPTQEDVAF 302 SFHSLEDR+VK+F S + V H IP A ++I K + P+ ++V Sbjct: 244 SFHSLEDRMVKRFMRKES-RGPQVPHGIPMTEDQIRALGSANLKTIG-KALKPSDQEVEM 301 Query: 303 NRRSRSAKLR 312 N RSRS+ LR Sbjct: 302 NTRSRSSVLR 311 >gi|153802806|ref|ZP_01957392.1| conserved hypothetical protein [Vibrio cholerae MZO-3] gi|254226626|ref|ZP_04920206.1| conserved hypothetical protein [Vibrio cholerae V51] gi|124121671|gb|EAY40414.1| conserved hypothetical protein [Vibrio cholerae MZO-3] gi|125620845|gb|EAZ49199.1| conserved hypothetical protein [Vibrio cholerae V51] Length = 316 Score = 197 bits (502), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 123/309 (39%), Positives = 175/309 (56%), Gaps = 20/309 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H+ VLL + I L P + +D TFG GG+SR+ ++G + ++DRDP A++ Q+ Sbjct: 7 HISVLLNESIEGLAIKPDGIYIDGTFGRGGHSRTILAQLGPQGRLYSIDRDPQAIAEAQK 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +F++ FS + +Y VDGV+FDLGVSS Q+D +RGFSF K GP Sbjct: 67 I---DDPRFTIIHGPFSGIAEYAQRYDLVGKVDGVLFDLGVSSPQLDDAERGFSFMKDGP 123 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---PFQTT 188 LDMRM SG+ S + QA++ D+T ++ GE+K A RIA AIV+ R++ P T Sbjct: 124 LDMRMDPTSGMPVSAWLAQADLDDITWVIREFGEDKHARRIAKAIVEYRENELNEPLTRT 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ LI S + HPATR+FQA RI++N+E+EE+ LR A L G L V+ Sbjct: 184 SQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALRGASDILAPQGRLSVI 243 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSN-----AHPAVFQSITKKVVVPTQEDVAFN 303 SFHSLEDR+VK+F S + V H +P A + K + P+ ++V N Sbjct: 244 SFHSLEDRMVKRFMRKES-QGPEVPHGLPLTQEQIRALGSAKMKTVGKALKPSDQEVELN 302 Query: 304 RRSRSAKLR 312 RSRS+ LR Sbjct: 303 PRSRSSVLR 311 >gi|167037220|ref|YP_001664798.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320115639|ref|YP_004185798.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|262825860|sp|B0K8J9|RSMH_THEP3 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|166856054|gb|ABY94462.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319928730|gb|ADV79415.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 308 Score = 197 bits (502), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 118/305 (38%), Positives = 173/305 (56%), Gaps = 10/305 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77 H VLL++ I LN P + +D T G GG+S K +IA+DRD A+ +E Sbjct: 5 HKSVLLKETIEYLNIKPEGIYVDGTLGGGGHSEEILKRLTTGKLIAIDRDLDAIKASKER 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVP----DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +++YK F +++ + DK VDG++ DLGVSS Q++ RGFS+ K P+ Sbjct: 65 LKNYK-NAEYINDNFKNIKEILKSLNIDK-VDGILLDLGVSSYQLEEVKRGFSYMKDAPM 122 Query: 134 DMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S SA DVVN+ + ++L R++ GEEK ASRIA IVK R+ +TT L Sbjct: 123 DMRMDKNSPFSAYDVVNKYSQQELERVIREYGEEKWASRIAKFIVKEREKGEIKTTFQLV 182 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ V S + HPA R+FQA+RI VN E++ L + + + L+ G + +++FH Sbjct: 183 EIIKNAVPASARREGPHPAKRTFQAIRIEVNEELKGLDKAIEDMVEVLRGKGRIAIITFH 242 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+VK F +M + V + ITKK V+P++E++ N RSRSAKL Sbjct: 243 SLEDRIVKNTFKKLENPCTCPPNMPCTCGKKPVVKIITKKPVLPSKEEIETNSRSRSAKL 302 Query: 312 RAGMR 316 R + Sbjct: 303 RVAEK 307 >gi|145600350|ref|YP_001164426.1| S-adenosyl-methyltransferase MraW [Yersinia pestis Pestoides F] gi|263504690|sp|A4TQ91|RSMH_YERPP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|145212046|gb|ABP41453.1| hypothetical protein YPDSF_3095 [Yersinia pestis Pestoides F] Length = 318 Score = 197 bits (502), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 123/313 (39%), Positives = 180/313 (57%), Gaps = 21/313 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + LN + +D TFG GG+SR ++G +IA+DRDP A+ ++ Sbjct: 14 HTSVLLDEAVKGLNIRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDRDPEAIEAAKQ 73 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +FS+ FS L YV D +DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 74 IT---DPRFSIVHGPFSDLAHYVRDLDLVGRIDGILLDLGVSSPQLDDAERGFSFMRDGP 130 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G+SA++ + +A+ D+ +L GEE+ A R+A AIV+R + P T++L Sbjct: 131 LDMRMDPSRGLSAAEWLMKASADDIAWVLKTFGEERFAKRLAKAIVERNLTQPMTRTKEL 190 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI F HPATRSFQA+RI++N+E+EE+ + L A + L G L V+SFH Sbjct: 191 ADLIANASPFRDK---HPATRSFQAIRIYINSELEEIERALDGAHEVLAPEGRLSVISFH 247 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306 SLEDR+VK F SR +V A + + +S+ K ++P ++A N R+ Sbjct: 248 SLEDRIVKNFIRHHSRGPQVPAGLPLTEAQLRSMGGRTLKSVGK--MMPGDAEIAENPRA 305 Query: 307 RSAKLRAGMRTVE 319 RS+ LR R E Sbjct: 306 RSSVLRFAERIGE 318 >gi|71275129|ref|ZP_00651416.1| methyltransferase [Xylella fastidiosa Dixon] gi|71900702|ref|ZP_00682825.1| methyltransferase [Xylella fastidiosa Ann-1] gi|170731118|ref|YP_001776551.1| S-adenosyl-methyltransferase MraW [Xylella fastidiosa M12] gi|71163938|gb|EAO13653.1| methyltransferase [Xylella fastidiosa Dixon] gi|71729523|gb|EAO31631.1| methyltransferase [Xylella fastidiosa Ann-1] gi|167965911|gb|ACA12921.1| S-adenosyl-methyltransferase [Xylella fastidiosa M12] Length = 340 Score = 197 bits (502), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 117/306 (38%), Positives = 171/306 (55%), Gaps = 10/306 (3%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAV 71 H HVPVL + + L LD TFG GG++R + G ++ +D+DP A+ Sbjct: 25 HLSMTHVPVLYTQAMEGLRVVENGTYLDGTFGRGGHARGVLQQLGPGGRLLVMDKDPEAI 84 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + + + +F+ L + +DGV+FDLGVSS Q+D +RGFSF K G Sbjct: 85 AMAERVF-SCDPRVVIRHGSFALLAQLAAPQSLDGVLFDLGVSSPQLDVPERGFSFAKDG 143 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM G SA+ + + + +++ +L GEEKQ+ RIA AIV R + P T Sbjct: 144 PLDMRMDPEMGESAAQWLARVSEREIAEVLWTYGEEKQSRRIARAIVAYRANQPLLRTVQ 203 Query: 191 LSSLIQKTVYFSKN----NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 L+ LI + +K+ +RIHPATRSFQ +RI VN E+ +L GL +A AL+ GG L+ Sbjct: 204 LAELIASVMLRTKSGACKSRIHPATRSFQGIRIHVNRELVDLEVGLEAALAALRPGGRLV 263 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+SFHSLEDR+VK+F SR KV +P + + + ++++ N R+ Sbjct: 264 VISFHSLEDRIVKQFI-SRHAKVPPTNRRLPEVQTFVPLLRMIGRAIKADEDELEVNPRA 322 Query: 307 RSAKLR 312 RSA LR Sbjct: 323 RSAVLR 328 >gi|15837392|ref|NP_298080.1| S-adenosyl-methyltransferase MraW [Xylella fastidiosa 9a5c] gi|20139246|sp|Q9PF88|RSMH_XYLFA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|9105686|gb|AAF83600.1|AE003919_11 conserved hypothetical protein [Xylella fastidiosa 9a5c] Length = 313 Score = 197 bits (502), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 116/301 (38%), Positives = 171/301 (56%), Gaps = 10/301 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HVPVL + + L LD TFG GG++R ++ G ++ +D+DP A++ + Sbjct: 3 HVPVLYTQAMEGLRVVENGTYLDGTFGRGGHARGVLQLLGPGGRLLVMDKDPEAIAMAER 62 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + + +F+ L + +DGV+FDLGVSS Q+D +RGFSF K GPLDMR Sbjct: 63 AF-SCDPRVVIRHGSFALLAQLAAPQSLDGVLFDLGVSSPQLDVPERGFSFVKDGPLDMR 121 Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M G SA+ + + + +++ +L GEEKQ+ RIA AIV R + P T L+ LI Sbjct: 122 MDPEMGESAAQWLARVSEREIADVLWTYGEEKQSRRIARAIVAYRANQPLLRTVQLAELI 181 Query: 196 QKTVYFSKN----NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +K+ +RIHPATRSFQ +RI VN E+ +L GL +A AL+ GG L+V+SFH Sbjct: 182 ASVMLRTKSGACKSRIHPATRSFQGIRIHVNRELVDLEVGLEAALAALRPGGRLVVISFH 241 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+VK+F SR KV +P + + + ++++ N R+RSA L Sbjct: 242 SLEDRIVKQFI-SRHAKVPPTNRRLPEVQTFVPLLRMIGRAIKADEDELEVNPRARSAVL 300 Query: 312 R 312 R Sbjct: 301 R 301 >gi|121728362|ref|ZP_01681391.1| conserved hypothetical protein [Vibrio cholerae V52] gi|147675217|ref|YP_001217911.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae O395] gi|153214084|ref|ZP_01949218.1| conserved hypothetical protein [Vibrio cholerae 1587] gi|153826882|ref|ZP_01979549.1| conserved hypothetical protein [Vibrio cholerae MZO-2] gi|153830362|ref|ZP_01983029.1| conserved hypothetical protein [Vibrio cholerae 623-39] gi|229521240|ref|ZP_04410660.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae TM 11079-80] gi|229524395|ref|ZP_04413800.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae bv. albensis VL426] gi|229528604|ref|ZP_04417994.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae 12129(1)] gi|262168390|ref|ZP_06036087.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae RC27] gi|262190392|ref|ZP_06048652.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae CT 5369-93] gi|297581036|ref|ZP_06942961.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae RC385] gi|121629353|gb|EAX61784.1| conserved hypothetical protein [Vibrio cholerae V52] gi|124115510|gb|EAY34330.1| conserved hypothetical protein [Vibrio cholerae 1587] gi|146317100|gb|ABQ21639.1| conserved hypothetical protein [Vibrio cholerae O395] gi|148874169|gb|EDL72304.1| conserved hypothetical protein [Vibrio cholerae 623-39] gi|149739298|gb|EDM53554.1| conserved hypothetical protein [Vibrio cholerae MZO-2] gi|227014303|gb|ACP10513.1| S-adenosyl-methyltransferase mraW [Vibrio cholerae O395] gi|229332378|gb|EEN97864.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae 12129(1)] gi|229337976|gb|EEO02993.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae bv. albensis VL426] gi|229341772|gb|EEO06774.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae TM 11079-80] gi|262023282|gb|EEY41986.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae RC27] gi|262033732|gb|EEY52212.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae CT 5369-93] gi|297534862|gb|EFH73698.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae RC385] Length = 316 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 123/309 (39%), Positives = 175/309 (56%), Gaps = 20/309 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H+ VLL + I L P + +D TFG GG+SR+ ++G + ++DRDP A++ Q+ Sbjct: 7 HISVLLNESIEGLAIKPDGIYIDGTFGRGGHSRTILAQLGPEGRLYSIDRDPQAIAEAQK 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +F++ FS + +Y VDGV+FDLGVSS Q+D +RGFSF K GP Sbjct: 67 I---DDPRFTIVHGPFSGIAEYAQRYDLVGKVDGVLFDLGVSSPQLDDAERGFSFMKDGP 123 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---PFQTT 188 LDMRM SG+ S + QA++ D+T ++ GE+K A RIA AIV+ R++ P T Sbjct: 124 LDMRMDPTSGMPVSAWLAQADLDDITWVIREFGEDKHARRIAKAIVEYRENELNEPLTRT 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ LI S + HPATR+FQA RI++N+E+EE+ LR A L G L V+ Sbjct: 184 SQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALRGASDILAPQGRLSVI 243 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSN-----AHPAVFQSITKKVVVPTQEDVAFN 303 SFHSLEDR+VK+F S + V H +P A + K + P+ ++V N Sbjct: 244 SFHSLEDRMVKRFMRKES-QGPEVPHGLPLTQEQIRALGSAKMKTVGKALKPSDQEVELN 302 Query: 304 RRSRSAKLR 312 RSRS+ LR Sbjct: 303 PRSRSSVLR 311 >gi|194741008|ref|XP_001952981.1| GF17544 [Drosophila ananassae] gi|190626040|gb|EDV41564.1| GF17544 [Drosophila ananassae] Length = 361 Score = 197 bits (501), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 126/331 (38%), Positives = 188/331 (56%), Gaps = 37/331 (11%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77 HVPVL + I L P PG +D TFGAGG++R + + V ALDRDP A +E Sbjct: 32 HVPVLCDTAIEHLQPLPGGTYIDMTFGAGGHTRRIFEKCPEAKVYALDRDPVAHQLAREL 91 Query: 78 MRD--YKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKS 130 + YK + FS + + G+ +G++FD G SSMQ D +RGFS K Sbjct: 92 SQKEKYKGRLIPLLGKFSDIPKLFEEHGLSRNSLNGILFDFGCSSMQFDEAERGFSISKD 151 Query: 131 GPLDMRMS---CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQ 186 GPLDMRM G++A++V+++ DL RIL I GEEK A +IA ++ R++ + Sbjct: 152 GPLDMRMDGGHSGGVTAAEVLSKIEETDLARILRIYGEEKAAKKIARGLIDARKALVQIE 211 Query: 187 TTQDLSSLIQKTVYFS-KNNRI----HPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 TT+ L+ L++ + + +++ H AT++FQALRIFVNNE+ E+ G+ A + L+ Sbjct: 212 TTKQLADLVEDILSSGPRRDKLQRPSHSATKTFQALRIFVNNELNEINYGMVLANEILRR 271 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMA-VRHMIP--SNAH-----PAVFQSIT---- 289 G L+ ++FHSLED +VK+ +G V+A + +P + H P + QS+ Sbjct: 272 EGRLVTITFHSLEDTIVKRHI---NGNVVAGAANPLPLKYSGHDIIDDPEMLQSLVQTNW 328 Query: 290 ----KKVVVPTQEDVAFNRRSRSAKLRAGMR 316 + V+VP E+VA N RSRSAKLRA ++ Sbjct: 329 KPLHRHVIVPDAEEVARNSRSRSAKLRAAVK 359 >gi|291484065|dbj|BAI85140.1| S-adenosyl-methyltransferase MraW [Bacillus subtilis subsp. natto BEST195] Length = 311 Score = 197 bits (501), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 119/303 (39%), Positives = 175/303 (57%), Gaps = 11/303 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H VLL + + LN P +D T G G+S + S +IA D+D A+ +E Sbjct: 4 HKTVLLRETVDGLNIKPDGTYVDCTLGGAGHSTYLLQQLSEKGRLIAFDQDDTALQHAKE 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + DYK Q L ++ F L++ + ++G VDG++FDLGVSS Q+D +RGFS+ PL Sbjct: 64 VLSDYKGQLILIKSNFRYLKECLNEQGITEVDGILFDLGVSSPQLDTPERGFSYHHDAPL 123 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S +SA +VVN+ +DL RI GEEK + +IA I + R +P QTT L Sbjct: 124 DMRMDQSATLSAKEVVNEWRYEDLVRIFFKYGEEKFSKQIARKIEEARMKSPIQTTGQLV 183 Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 LI+ + ++ + HPA R FQA+RI VN+E+ + L A + LK GG + V++FH Sbjct: 184 DLIKDAIPAPARRSGGHPAKRVFQAIRIAVNDELRVFEEALEQAIEVLKPGGRVSVITFH 243 Query: 252 SLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+ K F +S ++ +IP P + + IT+K + +QE++ N R+RSA Sbjct: 244 SLEDRICKTTFKEKSSLPELPPGLPVIPEEFEPEL-KLITRKPITASQEELEENNRARSA 302 Query: 310 KLR 312 KLR Sbjct: 303 KLR 305 >gi|282862166|ref|ZP_06271229.1| S-adenosyl-methyltransferase MraW [Streptomyces sp. ACTE] gi|282563191|gb|EFB68730.1| S-adenosyl-methyltransferase MraW [Streptomyces sp. ACTE] Length = 312 Score = 197 bits (501), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 120/311 (38%), Positives = 181/311 (58%), Gaps = 17/311 (5%) Query: 24 LLEKVIALLNPA-------PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74 +L++ + LL PA P V++D T G GG+S + + +IALDRD A+ Sbjct: 1 MLQRCLDLLAPALEATGPRP-PVVVDCTLGLGGHSEALLSAFPEARLIALDRDKEALRLS 59 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E + Y ++ +L A + +L + + G V GV+FDLGVSSMQ+D DRGF++ + Sbjct: 60 GERLAAYGDRATLVHAVYDELPEVLDRLGIPKVQGVLFDLGVSSMQLDEADRGFAYAQDA 119 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM +GI A++V+N +L RIL GEEKQA RI A+V+ R+ PF + Sbjct: 120 PLDMRMDQTTGIGAAEVLNTYPPGELVRILRAYGEEKQAKRIVSAVVREREKEPFSNSAR 179 Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L LI+ ++ +K +PA R+FQALRI VN E+ L + + +A ++L GG + V+S Sbjct: 180 LVELIRDSLPQAAKRTGGNPAKRTFQALRIEVNGELTVLERAIPAAVRSLAVGGRIAVLS 239 Query: 250 FHSLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 +HSLEDRLVK+ A+ + ++P P + +T+ +PT+E+VA NRR+ Sbjct: 240 YHSLEDRLVKQVLAAGAANTAPPGLPVVPERYQPR-LKLLTRGAELPTEEEVAENRRAAP 298 Query: 309 AKLRAGMRTVE 319 A+LR R E Sbjct: 299 ARLRGAERIRE 309 >gi|238791165|ref|ZP_04634804.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia intermedia ATCC 29909] gi|238729298|gb|EEQ20813.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia intermedia ATCC 29909] Length = 320 Score = 197 bits (501), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 122/311 (39%), Positives = 183/311 (58%), Gaps = 15/311 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + LN + +D TFG GG+SR ++G +IA+DRDP A+ + Sbjct: 14 HTSVLLDEAVNGLNIRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDRDPQAIEAAKS 73 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +FS+ FS+L YV + +DGV+ DLGVSS Q+D +RGFSF + GP Sbjct: 74 IT---DPRFSIVHGPFSELAHYVRELDLVGRIDGVLLDLGVSSPQLDDPERGFSFMRDGP 130 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G+SA++ + +A+ D+ +L GEE+ A R+A AIV+R + P T++L Sbjct: 131 LDMRMDPSRGLSAAEWLMKASADDIAWVLKTFGEERFAKRLAKAIVERNLTQPMTRTKEL 190 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI F + ++ HPATRSFQA+RI++N+E+EE+ + L A + L G L V+SFH Sbjct: 191 ADLIANASPFREKHK-HPATRSFQAIRIYINSELEEIERALDGALEVLAPAGRLSVISFH 249 Query: 252 SLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSI-TKKVVVPTQEDVAFNRRSRS 308 SLEDR+VK F SR +V A + + +++ + ++P +VA N R+RS Sbjct: 250 SLEDRIVKNFIRHHSRGPQVPAGLPLTEAQLRSMGGRTLKSAGKMMPPDAEVAENPRARS 309 Query: 309 AKLRAGMRTVE 319 + LR R E Sbjct: 310 SVLRFAERIKE 320 >gi|326791423|ref|YP_004309244.1| S-adenosyl-methyltransferase MraW [Clostridium lentocellum DSM 5427] gi|326542187|gb|ADZ84046.1| S-adenosyl-methyltransferase MraW [Clostridium lentocellum DSM 5427] Length = 311 Score = 197 bits (501), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 113/303 (37%), Positives = 175/303 (57%), Gaps = 9/303 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 +HV VLL + I L P +D T G G++R C + + I +D+D A++ Sbjct: 4 EHVSVLLNECIEGLAIKPNGTYVDGTLGGAGHARVVCNYLTEEGHFIGIDQDKNALAVST 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E ++D K + S+ + F ++ + + +GVDG++ DLGVSS Q+D RGFS+ P Sbjct: 64 ERLKDVKPKVSIVNSNFEKVAEVLEVLGIEGVDGMLIDLGVSSHQLDEPSRGFSYMHDAP 123 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM G +A +VVN ++L RI+ GEEK A RIA IV+ R+ P +TT +L Sbjct: 124 LDMRMDQDGAYTAYEVVNDMAEEELFRIIKEYGEEKWAKRIAQFIVEERKQKPIETTYEL 183 Query: 192 SSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+K + ++ + HPA R+FQA+RI VN E+E + +++ L +GG L +++F Sbjct: 184 VEVIKKAIPQGARKDGPHPAKRTFQAIRIAVNRELEIIEPTIKAIVDKLNSGGRLCIITF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK F + H+ I + + IT+K ++P+ E++ N RSRSA Sbjct: 244 HSLEDRIVKHAFRNLENPCTCAPHIPICVCGKKPLVKVITRKPILPSDEEIEINPRSRSA 303 Query: 310 KLR 312 KLR Sbjct: 304 KLR 306 >gi|94498181|ref|ZP_01304742.1| S-adenosyl-methyltransferase [Sphingomonas sp. SKA58] gi|94422311|gb|EAT07351.1| S-adenosyl-methyltransferase [Sphingomonas sp. SKA58] Length = 312 Score = 197 bits (501), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 126/300 (42%), Positives = 187/300 (62%), Gaps = 9/300 (3%) Query: 23 VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82 +LL++V+ L APG++ +D TFGAGGYS + + G+ V A DRDP A+ G+ + Sbjct: 1 MLLDEVLDALAIAPGEIHVDGTFGAGGYSSAMAQAGARVFAFDRDPDAIREGRAVADAHG 60 Query: 83 EQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 +L FS++ + ++ VD GV D+GVSSMQ+D +RGFSFQ GPLDM MS Sbjct: 61 --ITLIPGEFSRMAQLLTERDVDRVAGVTLDIGVSSMQLDRPERGFSFQSDGPLDMTMSQ 118 Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199 G+SA+D +N A +D+ ++ GEE ++ R+A AIV R P + T L+++++K + Sbjct: 119 GGMSAADFLNSAPEEDIADVIYRYGEEPRSRRVARAIVDAR---PLERTAQLAAVVRKAL 175 Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259 + +++ PATR+FQA+RI VN E+EEL +GL +AE L+ GG L +V+FHSLEDR+VK Sbjct: 176 GYKPHDKKDPATRTFQAIRIHVNRELEELERGLEAAEALLEEGGRLAIVTFHSLEDRIVK 235 Query: 260 KFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318 +F +RSG RH+ A P + K V ++A N R+RSA LR+ +RT Sbjct: 236 QFLRNRSGGEGGGSRHLPERTAGPQPTFARPAKAVRAGDAELARNPRARSATLRSAVRTA 295 >gi|187735156|ref|YP_001877268.1| S-adenosyl-methyltransferase MraW [Akkermansia muciniphila ATCC BAA-835] gi|187425208|gb|ACD04487.1| S-adenosyl-methyltransferase MraW [Akkermansia muciniphila ATCC BAA-835] Length = 520 Score = 197 bits (501), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 115/299 (38%), Positives = 174/299 (58%), Gaps = 7/299 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+ VLL + + +L PGK I+D T G GG++ + G+ V +DRD A + Sbjct: 219 HITVLLHETVDMLKAGPGKFIVDCTLGGGGHTELLLEQGATVWGIDRDADARRAAMLRLA 278 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + +F + F ++ + +GV DG++ DLGVSS Q+D RGFSF++ GPLDMR Sbjct: 279 RFGSRFKVLAGNFQDVESILSQQGVSRVDGLLADLGVSSHQLDTASRGFSFREDGPLDMR 338 Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M + +SA ++VN+A +++ IL GEE+ + IA A+VK R AP TT L+ ++ Sbjct: 339 MDTRAALSARNLVNEAPEEEIANILWQFGEERASRAIARAMVKARAQAPITTTAQLARIV 398 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + + + R HP TR+FQALRI VN E++ L L S+ + L GG + V++FHSLED Sbjct: 399 ESVL--PRKGRQHPGTRTFQALRIAVNGELDALDALLDSSVRLLGQGGRMAVITFHSLED 456 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHP-AVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 R VK+FF RS + +P F+ +++K V +E+++ N RSRSAKLR Sbjct: 457 RRVKQFFDLRSRPEIDRPEWPAPRPNPDYCFRPLSRKPVTAGEEELSTNPRSRSAKLRG 515 >gi|271964366|ref|YP_003338562.1| S-adenosylmethionine-dependentmethyltransferase [Streptosporangium roseum DSM 43021] gi|270507541|gb|ACZ85819.1| S-adenosylmethionine-dependentmethyltransferase [Streptosporangium roseum DSM 43021] Length = 330 Score = 197 bits (501), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 112/299 (37%), Positives = 175/299 (58%), Gaps = 10/299 (3%) Query: 15 HTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69 H G HVPV+LE+V+ LL PA P V++DA G GG++ + ++I +DRDP Sbjct: 11 HAPGGHVPVMLERVLELLAPALAGPAPVVVDANLGLGGHAEALLAAHPSLHLIGIDRDPT 70 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFS 126 A+ + Y E+ +L +A +L + + + G VD V+FDLGVSS Q+D +RGF+ Sbjct: 71 AIERSTARLAPYAERTTLVRAVSDELTEVLAEAGRPRVDAVLFDLGVSSPQLDEAERGFA 130 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 + PLDMRM ++A VVN + +L RIL GEE+ A R+A I+K R + Sbjct: 131 YSYDAPLDMRMDRDQELTAEIVVNTYSAAELIRILRDYGEERFAPRVARLIIKERGNEAI 190 Query: 186 QTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 +T+ L+ +++ + ++ +PA R+FQALRI VN E+ L + L +A AL GG Sbjct: 191 TSTKRLAEIVRTAIPAATRRTGGNPAKRTFQALRIEVNAELTALERALPAALDALTLGGR 250 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 ++V+++HSLEDRL K+ A+R+ + +P AH F +T+ +P++E+VA N Sbjct: 251 VVVLAYHSLEDRLTKQVLAARTRETGPPGLPVPLPAHQPRFALLTRGAELPSEEEVARN 309 >gi|161344767|ref|NP_440820.2| S-adenosyl-methyltransferase MraW [Synechocystis sp. PCC 6803] Length = 297 Score = 197 bits (501), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 126/306 (41%), Positives = 178/306 (58%), Gaps = 39/306 (12%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQET 77 HV VL ++ L P PG LDAT GAGG+S K+G + +DRD A++ E Sbjct: 13 HVSVLPTALVEGLEPKPGGYYLDATVGAGGHSERLLKLGIPLALTMIDRDVQAIAAAMER 72 Query: 78 MR----DYKE-QFSLFQATFS----QLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 ++ D K+ + +Q F+ QL+ + DG++ DLGVSS Q+D GDRGFSF+ Sbjct: 73 LQPLVADRKDISINTWQGNFADFPGQLEQF------DGIIADLGVSSPQLDQGDRGFSFR 126 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + PLDMRM S ++A++++N + KDL RI GEE+ + RIA IV++R PFQT Sbjct: 127 HTAPLDMRMDQSQDLTAAEIINHWSEKDLARIFYEYGEERLSRRIARQIVEQR---PFQT 183 Query: 188 TQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T DL+ I K V ++ RIHPATR+FQ LRI VN+E+ L + + A LK+GG Sbjct: 184 TTDLAEAITKWVPGKYRHGRIHPATRTFQGLRIAVNDELGSLEKFIAQAPHWLKSGGKFG 243 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 ++SFHSLEDR+VK F R + + V +TKK ++ +E+ N R+ Sbjct: 244 IISFHSLEDRIVKHRF--RETENLRV---------------LTKKPIIAGEEEQRQNPRA 286 Query: 307 RSAKLR 312 RSAKLR Sbjct: 287 RSAKLR 292 >gi|313884959|ref|ZP_07818711.1| S-adenosyl-methyltransferase MraW [Eremococcus coleocola ACS-139-V-Col8] gi|312619650|gb|EFR31087.1| S-adenosyl-methyltransferase MraW [Eremococcus coleocola ACS-139-V-Col8] Length = 318 Score = 197 bits (501), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 114/314 (36%), Positives = 184/314 (58%), Gaps = 21/314 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H VLL + I L+ P + +D T G G++ + S ++ A D+D A+ Q+ Sbjct: 6 HTSVLLHETIDQLDINPNGIYVDCTLGGAGHAAYLLSLLSPKGHLYAFDQDMNAIKNAQD 65 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + DY K+Q + A F+QL++ + ++GV DG+ +DLGVSS Q+D +RGFS++K Sbjct: 66 RLHDYIEKDQVTFIHANFAQLKEQLAERGVSYVDGIYYDLGVSSPQLDQAERGFSYKKEA 125 Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ ++A ++VN+ + + +I+ GEE+ A RI AI + R++ P +TT + Sbjct: 126 PLDMRMNQEDKLTAYEIVNEWPYEKIVKIIDHYGEERFAKRITRAIEQARKNKPIETTLE 185 Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ ++++ + ++ + HPA R+FQA+RI VN+E+ + L A LK GG + V+S Sbjct: 186 LAEIVKEAIPAATRRSGGHPAKRTFQAIRIAVNDELNVIETSLNQAFTLLKVGGRISVIS 245 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNA------HPAVFQSITKKVVVPTQEDVAFN 303 FHSLEDR+VK+ F +S R +P N A F + +K ++ +QE++ N Sbjct: 246 FHSLEDRIVKQLFRDKSS-----RPDLPPNLPILPERTEADFALVNRKPILASQEELDEN 300 Query: 304 RRSRSAKLRAGMRT 317 RSRSAKLR R Sbjct: 301 NRSRSAKLRVIQRN 314 >gi|117928210|ref|YP_872761.1| S-adenosyl-methyltransferase MraW [Acidothermus cellulolyticus 11B] gi|263433362|sp|A0LTL5|RSMH_ACIC1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|117648673|gb|ABK52775.1| S-adenosyl-methyltransferase MraW [Acidothermus cellulolyticus 11B] Length = 329 Score = 197 bits (501), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 104/253 (41%), Positives = 159/253 (62%), Gaps = 10/253 (3%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 H PV++++V+ LL PA PG +++DAT G GG++ + + S +I LD DP A+ Sbjct: 15 HRPVMVDRVVELLLPALGYPGAIVVDATVGLGGHAEAVVRAASAATLIGLDHDPHAIRLA 74 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQKSG 131 + + Y ++ L F +L + ++G+ V +FDLG+SS+ ID RGF++ + Sbjct: 75 AQRLAGYADRVQLVNVAFDRLAQVLSERGISAVAAILFDLGLSSLHIDDPARGFAYSRDV 134 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM +A+DVVN + +L R+L + GEE+ A RIA AIV+RR P +T+D Sbjct: 135 PLDMRMDPRLPRTAADVVNTYSATELARVLRVYGEERFAVRIADAIVRRRARQPITSTRD 194 Query: 191 LSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 LS L+++ + ++ HPA R+FQALRI VN+E+ L + L A AL+ GG ++V+S Sbjct: 195 LSELVREAIPAPARRTGGHPAKRTFQALRIEVNDELGRLERTLPVAIAALQPGGRIVVLS 254 Query: 250 FHSLEDRLVKKFF 262 +HSLEDR VK+FF Sbjct: 255 YHSLEDRTVKRFF 267 >gi|170718775|ref|YP_001783958.1| S-adenosyl-methyltransferase MraW [Haemophilus somnus 2336] gi|263456057|sp|B0US59|RSMH_HAES2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|168826904|gb|ACA32275.1| S-adenosyl-methyltransferase MraW [Haemophilus somnus 2336] Length = 321 Score = 197 bits (500), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 128/318 (40%), Positives = 182/318 (57%), Gaps = 28/318 (8%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSR----SFCKMGSNVIALDRDPFAVSCG 74 +H VLL + + L + +D TFG GG+SR K G +IA+DRDP A+ Sbjct: 11 EHFTVLLREAVGGLALKENGIYIDGTFGRGGHSRFILSQLSKKG-QLIAIDRDPQAIQVA 69 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 Q ++D + F + +FS + D G +DG++ DLGVSS Q+D +RGFSF K Sbjct: 70 Q-NIQDPR--FRIVHDSFSAIPDICEKLGLTGKIDGILLDLGVSSPQLDNAERGFSFMKD 126 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA------ 183 GPLDMRM + G+SA++ + Q + +DL +L GEE+ A RIA AIV +SA Sbjct: 127 GPLDMRMDTTQGLSATEWLRQVSEQDLAWVLKTFGEERFAKRIAQAIVGYNKSAVQSGAE 186 Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 P T L+ LI ++V F K+ HPATRSFQA+RIF+N+E++EL + L A L G Sbjct: 187 PLNRTLQLAELIAQSVPF-KDKYKHPATRSFQAIRIFINSELDELEKVLNGALNVLAPQG 245 Query: 244 LLIVVSFHSLEDRLVKKFFASRSG-----KVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L ++SFHSLEDR+VK F +S K + +R H + + K ++PT++ Sbjct: 246 RLSIISFHSLEDRMVKHFIRKQSKGDDLPKGLPLRE--EQIQHNQKLKPVG-KAIMPTEQ 302 Query: 299 DVAFNRRSRSAKLRAGMR 316 ++A N RSRSA LR R Sbjct: 303 EMAANVRSRSAVLRIAER 320 >gi|42559481|sp|Q8GE08|RSMH_HELMO RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|27262272|gb|AAN87417.1| methyltransferase [Heliobacillus mobilis] Length = 312 Score = 197 bits (500), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 117/307 (38%), Positives = 181/307 (58%), Gaps = 10/307 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+PVLLE+V+ L P P + LD T G GG+S + + + +I LD+DP A++ + Sbjct: 5 HIPVLLEEVLEALQPRPDGLYLDGTVGGGGHSAAILEKTAGQGRLIGLDQDPRALAAARI 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + +Q +L ++ F QL V + G +DG++ D+GVSS Q+D +RGF+++ P Sbjct: 65 KLEKFADQVTLVRSNFRQLGSVVEELGQKGKIDGILLDIGVSSHQLDEAERGFTYRAEAP 124 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ G ++A+ ++N+ ++ RIL GEE+ + RIA IV RR P +T DL Sbjct: 125 LDMRMNPDGAVTAAQILNEYPEGEIFRILWEYGEERWSKRIAQFIVNRRTEQPLASTTDL 184 Query: 192 SSLIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+ + + HPA R+FQALRI VN+E+ L + L +A AL G L V+SF Sbjct: 185 VDVIRAAIPAAARQEGGHPAKRTFQALRIAVNDELGALQEALPAALDALAPSGRLAVISF 244 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK FFA ++ M + A + IT+K + ++E++ N RS+SA Sbjct: 245 HSLEDRIVKNFFAEQAKGCTCPPDMPVCGCGKKARLKIITRKPITGSEEELKINPRSQSA 304 Query: 310 KLRAGMR 316 KLR + Sbjct: 305 KLRVAQK 311 >gi|285019581|ref|YP_003377292.1| S-adenosyl-methyltransferase [Xanthomonas albilineans GPE PC73] gi|283474799|emb|CBA17298.1| putative s-adenosyl-methyltransferase protein [Xanthomonas albilineans] Length = 333 Score = 197 bits (500), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 119/305 (39%), Positives = 170/305 (55%), Gaps = 7/305 (2%) Query: 12 AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDP 68 A+ + HVPVL +V+ L + LD TFG GG++R G ++ +D+DP Sbjct: 11 AVSYPSAAHVPVLFAQVMDGLQVIENGIYLDGTFGRGGHARGVLHKLGPGGRLLVMDKDP 70 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 A++ + + S+ + +F+ L + +DGV+FDLGVSS Q+D +RGFSF Sbjct: 71 EAIAEAEHAF-GGDARVSIRRGSFADLGHWDAATALDGVLFDLGVSSPQLDVAERGFSFG 129 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 K GPLDMRM +G SA+ + +A+ +++ +L GEE+Q+ RIA AIV RR P Sbjct: 130 KDGPLDMRMDPHAGESAAQWLARADEREIADVLWHYGEERQSRRIARAIVARRAEQPLTR 189 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T L+ LI TV +++ HPATRSFQA+RI N E+ +L GL +A LK GG L V Sbjct: 190 TAQLAELI-ATVMPRGDSKTHPATRSFQAIRIHTNRELADLESGLDAALARLKPGGRLAV 248 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +SFHSLEDR+VK F R K +P + + E++A N R+R Sbjct: 249 ISFHSLEDRIVKHFM-QRHAKAPPSNRRLPEAQTFVPALRLHGGAIKADAEELAGNPRAR 307 Query: 308 SAKLR 312 SA LR Sbjct: 308 SAVLR 312 >gi|87122635|ref|ZP_01078512.1| hypothetical protein MED121_20371 [Marinomonas sp. MED121] gi|86162093|gb|EAQ63381.1| hypothetical protein MED121_20371 [Marinomonas sp. MED121] Length = 313 Score = 197 bits (500), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 116/309 (37%), Positives = 177/309 (57%), Gaps = 14/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H+ V+L + + L P +D TFG GG+SR + N ++ D+DP A+ G+ Sbjct: 8 HISVMLNESVEDLITDPNGNYIDGTFGRGGHSRLVLQKLENGKLLGFDKDPVAIEYGK-A 66 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F + Q +F+ + Y+ +DGV+ DLGVSS Q+D +RGFSF GP Sbjct: 67 LEGEDARFQIVQDSFASMDQYIASHLDESGKLDGVLMDLGVSSPQLDDAERGFSFMNDGP 126 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ G+SA+ + QA K++ ++ GEE+ + RIA AI + R TT L Sbjct: 127 LDMRMNPGVGLSAAQWIAQAKEKEIADVMYQYGEERFSRRIAKAICEYRAHTEILTTLQL 186 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +++++ + + +PATR+FQ +RIF+NNE+ +L GL SA ALK GG L+V+SFH Sbjct: 187 ANIVKDANPAWEKGK-NPATRAFQGIRIFINNELGDLETGLESAANALKVGGRLVVISFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+VK+F + S RH+ N ++ K + P++++V N RSRSA Sbjct: 246 SLEDRIVKRFMKTMSKGPDLPRHLPIRNTELSIKFKTIGKAIKPSKQEVDDNVRSRSAV- 304 Query: 312 RAGMRTVER 320 MR +ER Sbjct: 305 ---MRVLER 310 >gi|330813725|ref|YP_004357964.1| rRNA small subunit methyltransferase H [Candidatus Pelagibacter sp. IMCC9063] gi|327486820|gb|AEA81225.1| rRNA small subunit methyltransferase H [Candidatus Pelagibacter sp. IMCC9063] Length = 333 Score = 197 bits (500), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 113/308 (36%), Positives = 167/308 (54%), Gaps = 16/308 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77 H PV+L +VI L P I+D TFG GGYS+ + V+ +DRDP Sbjct: 4 HYPVMLNEVITSLEPRSKTTIVDCTFGCGGYSQKILETFPDCKVVGIDRDPSVQEFATIL 63 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + +K +F FS L++ + +K D + VFD G+SS Q+D DRGFSF + LD Sbjct: 64 EKKFKNRFFFINDKFSNLEEII-NKHKDEIGSFVFDFGISSFQLDNHDRGFSFNSNIKLD 122 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRM + ISA +++N+A+++DL I+ I GE+K +IA IV+ R P +TQDL + Sbjct: 123 MRMGKNKISAYELLNEASLEDLNSIIKIFGEDKDHKKIAKEIVRTRDIKPIHSTQDLCNA 182 Query: 195 IQK---TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 I K YF KN P+T++FQA+R+ VN E+ E+ L K ++ V+FH Sbjct: 183 ILKAKGNKYFKKN----PSTKTFQAIRMIVNQELSEIFNSLTRVIKICNPDTIVTAVTFH 238 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAH---PAVFQSITKKVVVPTQEDVAFNRRSRS 308 SLEDR+VKK F IP+ Q + + + P+++++ N RSRS Sbjct: 239 SLEDRIVKKIFNISKDSDQNPSRYIPTTHQEKKETFIQRVNNRALKPSEQEIVSNPRSRS 298 Query: 309 AKLRAGMR 316 AKLR+ + Sbjct: 299 AKLRSATK 306 >gi|153953806|ref|YP_001394571.1| S-adenosyl-methyltransferase MraW [Clostridium kluyveri DSM 555] gi|219854422|ref|YP_002471544.1| hypothetical protein CKR_1079 [Clostridium kluyveri NBRC 12016] gi|263447433|sp|B9E0V5|RSMH_CLOK1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|146346687|gb|EDK33223.1| MraW [Clostridium kluyveri DSM 555] gi|219568146|dbj|BAH06130.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 309 Score = 197 bits (500), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 118/308 (38%), Positives = 177/308 (57%), Gaps = 15/308 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+PVLL++ I LN V +D T G GG+S K S+ +IA+D+D A++ +E Sbjct: 5 HIPVLLKETIDSLNIKQDGVYVDCTLGGGGHSLEILKRLSDKGKLIAIDQDISAINWSEE 64 Query: 77 TMRDYK------EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 ++++K + F Q +L+ DK VDG++ DLGVSS Q+D G RGFS+ K Sbjct: 65 RLKNFKNIIYVHDNFYNIQQILKELK---IDK-VDGIIMDLGVSSYQLDEGKRGFSYMKD 120 Query: 131 GPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM+ S +SA ++VNQ N ++L RI+ GEE + RI+ IVK R+ +P TT Sbjct: 121 APLDMRMNRDSSLSAYEIVNQYNEEELCRIIRDYGEENFSRRISKFIVKAREESPISTTL 180 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I+K + HPA R+FQA+RI VN E++ L + + L GG + +++ Sbjct: 181 QLVGIIKKAIPLKFQKEGHPAKRTFQAIRIEVNEELKILDKAVEDGVANLNTGGRIAIIT 240 Query: 250 FHSLEDRLVK-KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR++K KF + I + + + KK +VPT+E+ + N RS+S Sbjct: 241 FHSLEDRIIKSKFKMLENPCTCPADFPICICGKKPIVKIVNKKPIVPTEEEKSINPRSKS 300 Query: 309 AKLRAGMR 316 +KLR R Sbjct: 301 SKLRIAER 308 >gi|309812627|ref|ZP_07706371.1| S-adenosyl-methyltransferase MraW [Dermacoccus sp. Ellin185] gi|308433322|gb|EFP57210.1| S-adenosyl-methyltransferase MraW [Dermacoccus sp. Ellin185] Length = 323 Score = 197 bits (500), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 116/306 (37%), Positives = 180/306 (58%), Gaps = 9/306 (2%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74 HVPV+L +++ L P+ G + +DAT G GG++ + + + I +DRD A+ Sbjct: 12 HVPVMLTEILDALAPSLERSGALYVDATLGMGGHTEAVLERFGEARAIGIDRDTEALRLA 71 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 E + + ++F A +++ D +P + D ++FDLGVSS+Q+D DRGFS++ PLD Sbjct: 72 GERLARFGDRFEGVHAVNTEVADVLP-RPADAMLFDLGVSSLQLDELDRGFSYRADAPLD 130 Query: 135 MRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 MRM + G +A+DV+N A+ +L RIL GEE+ A +IAHA+VK R+ P+ T+ L Sbjct: 131 MRMDQTSDGPTAADVLNTASQDELERILKTYGEERFARKIAHAVVKEREKQPWTTSGRLV 190 Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +++ + S+ HPA R+FQALRI VN+E+ Q + SA +L GG L V+SFH Sbjct: 191 EMLRSVIPLASQRQSGHPAKRTFQALRIEVNDELRGWEQAVTSALDSLAVGGRLAVLSFH 250 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+ K+ FA+ S + H F +T+ VP+++++ N RS S +L Sbjct: 251 SLEDRITKRAFATASASTAPPGLPVELPQHRPEFALVTRGAAVPSEDELESNPRSASVRL 310 Query: 312 RAGMRT 317 R RT Sbjct: 311 RVIERT 316 >gi|46580916|ref|YP_011724.1| S-adenosyl-methyltransferase MraW [Desulfovibrio vulgaris str. Hildenborough] gi|120601783|ref|YP_966183.1| S-adenosyl-methyltransferase MraW [Desulfovibrio vulgaris DP4] gi|50402222|sp|P62470|RSMH_DESVH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446337|sp|A1VBE0|RSMH_DESVV RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|46450336|gb|AAS96984.1| S-adenosyl-methyltransferase MraW [Desulfovibrio vulgaris str. Hildenborough] gi|120562012|gb|ABM27756.1| S-adenosyl-methyltransferase MraW [Desulfovibrio vulgaris DP4] gi|311234607|gb|ADP87461.1| S-adenosyl-methyltransferase MraW [Desulfovibrio vulgaris RCH1] Length = 323 Score = 197 bits (500), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 120/305 (39%), Positives = 170/305 (55%), Gaps = 12/305 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H+PVLLE+V+ L P G LD T G G++ + + G+ + LDRDP A+ Sbjct: 16 HIPVLLEEVLEYLAPRKGGRYLDGTLGLAGHASAVLERAGEGTELCGLDRDPEALRRATA 75 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + Q L+ +S+ ++ + D G VDG + D+GVSSMQID +RGFSF GPL Sbjct: 76 RLAPFAGQTHLYHLRYSEFEEALDDLGWPTVDGALIDIGVSSMQIDLAERGFSFHADGPL 135 Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM SA +VN+ + L I+ GEE A RIA AIV R + TT L+ Sbjct: 136 DMRMDPDAHESAWRLVNRERHEVLRDIIARYGEEPMAGRIARAIVDARNTGSIDTTLQLA 195 Query: 193 SLIQKT--VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +++++ + R HPATR+FQALR+ VN+E+ EL + L + L GG L+V+SF Sbjct: 196 AIVERAYPAKWRATARNHPATRTFQALRMAVNDELGELERFLDAILARLAPGGRLVVISF 255 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 HSLEDR+VK + RH +P H + +TK+ V T ++A N R+ S Sbjct: 256 HSLEDRIVKHRMRHWAEGCRCPRH-VPRCVCGHSPEVRILTKRPVTATDGELARNPRASS 314 Query: 309 AKLRA 313 AKLRA Sbjct: 315 AKLRA 319 >gi|159027563|emb|CAO86934.1| MraW [Microcystis aeruginosa PCC 7806] Length = 293 Score = 197 bits (500), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 120/303 (39%), Positives = 180/303 (59%), Gaps = 29/303 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77 H+ VL +++IA LN PG LD T G GG+SR + + V A+DRD A+ + + Sbjct: 7 HISVLSQELIAGLNIQPGGHYLDLTLGGGGHSRLLLEAHPETKVTAIDRDQSALEAAKIS 66 Query: 78 MRDYKE-QFSLFQATFSQLQDYV-PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + Y + + +L+ F+ DY + DG++ DLGVSS Q D +RGFSF+ + LDM Sbjct: 67 LAPYLDSRLTLWWGNFA---DYKGQNSSFDGIIADLGVSSPQFDQSERGFSFRHTAALDM 123 Query: 136 RMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM C ++A+D++N K+L + GEE+ + IA +IV++R PF TT +L+++ Sbjct: 124 RMDRCQSLTAADIINHWQEKELADLFYQYGEERLSRPIARSIVQKR---PFTTTTELAAV 180 Query: 195 IQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 I +V S + RIHPATR FQ+LRI VN E++ L + L A + LK+GG++ ++SFHSL Sbjct: 181 IASSVPASYRYGRIHPATRVFQSLRIAVNQELDSLQKLLNQAPQWLKSGGIIAMISFHSL 240 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 EDRL+K F R + + ITKK ++P++E+ A N RSRSAKLR Sbjct: 241 EDRLIKYGF--REDNSLKI---------------ITKKPIIPSREEQAKNPRSRSAKLRI 283 Query: 314 GMR 316 + Sbjct: 284 AQK 286 >gi|254446788|ref|ZP_05060263.1| S-adenosyl-methyltransferase MraW [Verrucomicrobiae bacterium DG1235] gi|198256213|gb|EDY80522.1| S-adenosyl-methyltransferase MraW [Verrucomicrobiae bacterium DG1235] Length = 305 Score = 197 bits (500), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 116/299 (38%), Positives = 170/299 (56%), Gaps = 9/299 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78 HVPVL + + L P+ G + LD TFG GG++ + + V+ALD+DP AV+ E Sbjct: 4 HVPVLAAETLEHLAPSDGGLYLDCTFGGGGHTELVLEAANCTVVALDQDPAAVARAAELK 63 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138 Y ++ + F L D + + DG++FD GVSS Q+D DRGFSF+ PLDMRM Sbjct: 64 ERYGDRLRFHRMNFETL-DQLEEGPFDGILFDFGVSSFQLDEVDRGFSFRGEAPLDMRMD 122 Query: 139 C-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK 197 SG+SA+ + A+ DL R + EEK +I +AI+ R+ TT L+ LI Sbjct: 123 PESGVSAAQWLATADQADLLRAIRGYAEEKNWRKIVNAILAAREKNELSTTTQLADLILS 182 Query: 198 T----VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 V F N+++HPAT+ FQ +RI +N+EI + +GL +A LK GG+L +SFHSL Sbjct: 183 CTPARVRF--NSKLHPATKVFQGIRIAINDEIGVIERGLPAAFDKLKTGGILCAISFHSL 240 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 EDR+ K + +G+ R P + + + K+ + + ++VA N RSRSAKLR Sbjct: 241 EDRVAKVLYRRWAGRPEGSRDNRPQDMRVTRAELLGKRPITASDKEVAVNPRSRSAKLR 299 >gi|160872354|ref|ZP_02062486.1| S-adenosyl-methyltransferase MraW [Rickettsiella grylli] gi|159121153|gb|EDP46491.1| S-adenosyl-methyltransferase MraW [Rickettsiella grylli] Length = 312 Score = 197 bits (500), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 119/303 (39%), Positives = 184/303 (60%), Gaps = 13/303 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H PVLL +VI L + +DATFG GG++ + S+ IA+D+DP A++ G + Sbjct: 7 HQPVLLTEVIENLVLDKDGIYVDATFGRGGHAGQILQRLSDKGRCIAIDKDPAAMAFGIQ 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + ++F ++Q +FSQL+ +GV G++FDLGVSS Q++ +RGFSF + GP Sbjct: 67 QW-GHDKRFKIYQGSFSQLKTMAEREGVINKVSGILFDLGVSSPQLEKAERGFSFLREGP 125 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM +GISA++ + A K++ ++L GEE+ A RIA AIV+ ++ P TT L Sbjct: 126 LDMRMDPLTGISAAEWLAHAKEKEIVKVLKNYGEERYAKRIARAIVEEQKLRPIVTTVQL 185 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++++ K + + HPATR+FQA+RI +NNE+E+L L + LK GG L+V+SFH Sbjct: 186 ANVV-KLAHPHWDRFKHPATRTFQAIRIQINNELEDLNVSLGQSIDVLKQGGRLLVISFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK+F + + + ++ + +P+ + I + V P + N RSRSA Sbjct: 245 SLEDRIVKRFIHQHAHEAVELKKLPFMPAEWKRPRLKKIGRG-VKPDAYAIKTNPRSRSA 303 Query: 310 KLR 312 LR Sbjct: 304 LLR 306 >gi|298369646|ref|ZP_06980963.1| S-adenosyl-methyltransferase MraW [Neisseria sp. oral taxon 014 str. F0314] gi|298282203|gb|EFI23691.1| S-adenosyl-methyltransferase MraW [Neisseria sp. oral taxon 014 str. F0314] Length = 323 Score = 197 bits (500), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 123/306 (40%), Positives = 177/306 (57%), Gaps = 10/306 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQE 76 H+ VLL + + LN P V +D TFG GG+SR ++G +I D+DP A+ ++ Sbjct: 9 HITVLLNEAVDALNIRPDGVYVDGTFGRGGHSRLILSRLGEEGRLIVFDKDPQAIVAARK 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + Y + S+ FS Q + + G VDG +FDLGVSS QID G RGFSF+ PL Sbjct: 69 -LAAYDMRVSVVHDGFSVFQTALDELGIGKVDGALFDLGVSSPQIDEGGRGFSFRFDAPL 127 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + G+SA++ + A+ +DL ++ GEE+ + +IA AIV +R+ +P TT+ L+ Sbjct: 128 DMRMDPTRGMSAAEWIATASEQDLNEVIKNYGEERFSRQIARAIVAQREESPIDTTRKLA 187 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 L+ + V + + PATR+FQA+RIF+N E+EE+ L A LK GG L V++FHS Sbjct: 188 QLVAQNVRTRERGQ-DPATRTFQAVRIFINRELEEIEAVLPQATGRLKEGGRLAVIAFHS 246 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK+F +S R + A P K V P+ ++ N RSRSA L Sbjct: 247 LEDRIVKQFIKKQSQHAPLPRWVAVKEADLPQPPLRPVGKAVRPSDAEIQANPRSRSAVL 306 Query: 312 RAGMRT 317 R RT Sbjct: 307 RVAERT 312 >gi|206889537|ref|YP_002249141.1| S-adenosyl-methyltransferase MraW [Thermodesulfovibrio yellowstonii DSM 11347] gi|262825898|sp|B5YFU3|RSMH_THEYD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|206741475|gb|ACI20532.1| S-adenosyl-methyltransferase MraW [Thermodesulfovibrio yellowstonii DSM 11347] Length = 292 Score = 197 bits (500), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 120/302 (39%), Positives = 180/302 (59%), Gaps = 26/302 (8%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H+PV++++VI LLNP G + +DAT G GG+S + K S +I +DRD A+ Sbjct: 7 HIPVMVKEVIQLLNPY-GGIYVDATLGCGGHSLAILKRLSPDGRLIGIDRDESAIFYANR 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + D + L +A+FS L++ + + + +DG++FDLGVS +Q+ +RGFSF L Sbjct: 66 ILDDSR--VILRKASFSHLKEVLSELNIEKIDGIIFDLGVSMLQLKDFERGFSFHSEERL 123 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM ++A DVVN+ + LT+I G+E A RIA I+++R T ++L+ Sbjct: 124 DMRMDQTEPLTAWDVVNKYPEQKLTQIFRDYGDEPFARRIAREIIRQRGKKTIDTCKELA 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 L++KTV ++ R+HPAT+ FQA+RI VN E EEL QGL A + L +GG + V+S+HS Sbjct: 184 DLVKKTV--PRHGRLHPATQIFQAIRIEVNREFEELRQGLLQAVELLNSGGRICVISYHS 241 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 EDR+VK FF K + +TKK ++P+ E+VA N +RSA+LR Sbjct: 242 GEDRVVKNFFREEEQK--------------GNLRILTKKPLLPSLEEVAKNPSARSARLR 287 Query: 313 AG 314 G Sbjct: 288 GG 289 >gi|282889763|ref|ZP_06298302.1| hypothetical protein pah_c004o134 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500337|gb|EFB42617.1| hypothetical protein pah_c004o134 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 310 Score = 197 bits (500), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 117/302 (38%), Positives = 173/302 (57%), Gaps = 10/302 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCGQE 76 H VL+++VI +P ++ +D T GAGG+S + + IA+D+DP A++ E Sbjct: 5 HQSVLMKEVIESFSPCSLRIFIDGTAGAGGHSAALLATHPEIERLIAIDQDPLALTVAAE 64 Query: 77 TMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + E+ + F L+ D + VDG++ DLGVSSMQ+D ++GFSF K GPL Sbjct: 65 NLAPWSEKVTFVSGNFENLEKFLDQLEISTVDGILLDLGVSSMQLDIAEKGFSFSKEGPL 124 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + ++A+ VVN K+L RI GEE+ A AIV+ R TTQ L Sbjct: 125 DMRMDPRNPLTAAIVVNTWPQKELERIFRDYGEERHWRAAARAIVQARAEKQILTTQQLV 184 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +++ + F+ RIHP T FQALRI VN E++ + + + +A + LK GG L ++SFHS Sbjct: 185 EVLRPVLRFNPAKRIHPCTLVFQALRICVNKELDVVERVIPAAIRRLKKGGRLGIISFHS 244 Query: 253 LEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 LED +VK F + R + + + P V + +T+K +V E+VA N RSRSAK Sbjct: 245 LEDGIVKNLFRHAASDKWDTRGLAGLFRDKDPEV-RLLTRKPLVANDEEVAANPRSRSAK 303 Query: 311 LR 312 LR Sbjct: 304 LR 305 >gi|71281391|ref|YP_271121.1| S-adenosyl-methyltransferase MraW [Colwellia psychrerythraea 34H] gi|88909194|sp|Q47VQ1|RSMH_COLP3 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|71147131|gb|AAZ27604.1| S-adenosyl-methyltransferase MraW [Colwellia psychrerythraea 34H] Length = 316 Score = 197 bits (500), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 126/316 (39%), Positives = 184/316 (58%), Gaps = 18/316 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H+ VLL + + L +D TFG GG+S K+ N +IA+DRDP A++ E Sbjct: 7 HISVLLNEAVDGLAITDDGCYIDCTFGRGGHSSVILSKLSDNGRLIAIDRDPTAITAA-E 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +D K +F + F+ L + VDG++ DLGVSS Q+D +RGFSF K GP Sbjct: 66 KFKDDK-RFLIEHQGFAALAEIAEKHELTGKVDGILLDLGVSSPQLDEAERGFSFMKDGP 124 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G +A++ + A+V+D+T +L GEEK A RIA+AIV R+ P T L Sbjct: 125 LDMRMDTSKGQTAAEWLAVADVEDITWVLRTFGEEKHAWRIANAIVDTREETPLTRTSQL 184 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI KT + + HPATRSFQA+R+++N+E++++ + L ++ L GG L+V+SFH Sbjct: 185 AKLI-KTTAPQREIKKHPATRSFQAIRMYINSELDQIEKALVASLDVLAEGGRLVVISFH 243 Query: 252 SLEDRLVKKFFASRSGKVMAVRHM----IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 SLEDRLVK+F S R + I N + S+ + + P+Q +V N RSR Sbjct: 244 SLEDRLVKQFMKKHSQGKKVPRGLPISEIELNKGKKL--SLVGRRLKPSQTEVEENVRSR 301 Query: 308 SAKLRAGMRTVERSIE 323 S+ LR R +ER+ + Sbjct: 302 SSVLRVAER-LERNTD 316 >gi|52425730|ref|YP_088867.1| S-adenosyl-methyltransferase MraW [Mannheimia succiniciproducens MBEL55E] gi|115311583|sp|Q65RX8|RSMH_MANSM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|52307782|gb|AAU38282.1| unknown [Mannheimia succiniciproducens MBEL55E] Length = 322 Score = 196 bits (499), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 130/316 (41%), Positives = 178/316 (56%), Gaps = 24/316 (7%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQ 75 +H+ VLL + + L + +D TFG GG+SR K+ N +IA+DRDP A++ + Sbjct: 11 EHITVLLHEAVDGLALKDKGIYIDGTFGRGGHSRLILSKLTENGRLIAIDRDPRAIAAAE 70 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 E +F + +FS + Y+ +K +DG++ DLGVSS Q+D +RGFSF K Sbjct: 71 EIQ---DSRFHIEHNSFSAIP-YICEKLGLVGKIDGILLDLGVSSPQLDDAERGFSFMKD 126 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA------ 183 GPLDMRM S G+SA+ + Q +DL +L GEE+ A RIAHAIV +SA Sbjct: 127 GPLDMRMDTSKGLSAAQWLQQVTEEDLAWVLKTFGEERFAKRIAHAIVNYNKSAVQNGTE 186 Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 P T L+ LI + V F K+ HPATRSFQA+RIF+N+E++EL L SA L G Sbjct: 187 PLTRTLPLAELIAQAVPF-KDKHKHPATRSFQAIRIFINSELDELESVLHSALTVLAPEG 245 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK---KVVVPTQEDV 300 L V+SFHSLEDR+VK F +S K ++ +P K K + P + +V Sbjct: 246 RLSVISFHSLEDRMVKHFMRKQS-KGESIPKGLPLREDQINRNRTLKVIGKAIQPKESEV 304 Query: 301 AFNRRSRSAKLRAGMR 316 N RSRSA LR R Sbjct: 305 FANPRSRSAVLRVAER 320 >gi|321315277|ref|YP_004207564.1| 16S rRNA m(4)C1402 methyltranserfase [Bacillus subtilis BSn5] gi|320021551|gb|ADV96537.1| 16S rRNA m(4)C1402 methyltranserfase [Bacillus subtilis BSn5] Length = 311 Score = 196 bits (499), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 118/303 (38%), Positives = 175/303 (57%), Gaps = 11/303 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H VLL + + LN P +D T G G+S + S +IA D+D A+ +E Sbjct: 4 HKTVLLRETVDGLNIKPDGTYVDCTLGGAGHSTYLLQQLSEKGRLIAFDQDDTALQHAKE 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + DYK Q L ++ F L++ + ++G VDG++FDLGVSS Q+D +RGFS+ PL Sbjct: 64 VLSDYKGQLILIKSNFRYLKECLNEQGITEVDGILFDLGVSSPQLDTPERGFSYHHDAPL 123 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S ++A +VVN+ +DL RI GEEK + +IA I + R +P QTT L Sbjct: 124 DMRMDQSATLTAKEVVNEWRYEDLVRIFFKYGEEKFSKQIARKIEEARMKSPIQTTGQLV 183 Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 LI+ + ++ + HPA R FQA+RI VN+E+ + L A + LK GG + V++FH Sbjct: 184 DLIKDAIPAPARRSGGHPAKRVFQAIRIAVNDELRVFEEALEQAIEVLKPGGRVSVITFH 243 Query: 252 SLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+ K F +S ++ +IP P + + IT+K + +QE++ N R+RSA Sbjct: 244 SLEDRICKTTFKEKSSLPELPPGLPVIPEEFEPEL-KLITRKPITASQEELEENNRARSA 302 Query: 310 KLR 312 KLR Sbjct: 303 KLR 305 >gi|28199742|ref|NP_780056.1| S-adenosyl-methyltransferase MraW [Xylella fastidiosa Temecula1] gi|28057863|gb|AAO29705.1| conserved hypothetical protein [Xylella fastidiosa Temecula1] Length = 322 Score = 196 bits (499), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 118/312 (37%), Positives = 171/312 (54%), Gaps = 10/312 (3%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65 M H HVPVL + + L LD TFG GG++R + G ++ +D Sbjct: 1 MDGLAPHLSMTHVPVLYTQAMEGLRVVENGTYLDGTFGRGGHARGVLQQLGPGGRLLVMD 60 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125 +DP A++ + + + +F+ L + +DGV+FDLGVSS Q+D +RGF Sbjct: 61 KDPEAIAMAERAF-SCDPRVVIRHGSFALLAQLAAPQSLDGVLFDLGVSSPQLDVPERGF 119 Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF K GPLDMRM G SA+ + + + +++ +L GEEKQ+ RIA AIV R + P Sbjct: 120 SFAKDGPLDMRMDPEMGESAAQWLARVSEREIADVLWTYGEEKQSRRIARAIVAYRANQP 179 Query: 185 FQTTQDLSSLIQKTVYFSK----NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 T L+ LI + +K +RIHPATRSFQ +RI VN E+ +L GL +A AL+ Sbjct: 180 LLRTVQLAELIASVMLRTKFGACKSRIHPATRSFQGIRIHVNRELVDLEVGLEAALAALR 239 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300 GG L+V+SFHSLEDR+VK+F SR KV +P + + + ++++ Sbjct: 240 PGGRLVVISFHSLEDRIVKQFI-SRHSKVPPTNRRLPEVQTFVPLLRMIGRAIKADEDEL 298 Query: 301 AFNRRSRSAKLR 312 N R+RSA LR Sbjct: 299 EVNPRARSAVLR 310 >gi|238760089|ref|ZP_04621239.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia aldovae ATCC 35236] gi|238701708|gb|EEP94275.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia aldovae ATCC 35236] Length = 320 Score = 196 bits (499), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 123/310 (39%), Positives = 181/310 (58%), Gaps = 19/310 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + LN + +D TFG GG+SR ++G +IA+DRDP A+ + Sbjct: 14 HTSVLLDEAVNGLNIRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDRDPQAIDAAKS 73 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +FS+ FS L YV + +DGV+ DLGVSS Q+D +RGFSF + GP Sbjct: 74 IT---DSRFSIVHGPFSDLAHYVRELDLVGRIDGVLLDLGVSSPQLDDPERGFSFMRDGP 130 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G+SA+D + +A+ D+ +L GEE+ A R+A AIV+R + P T++L Sbjct: 131 LDMRMDPTRGLSAADWLMKASADDIAWVLKTFGEERFAKRLAKAIVERNLTQPMTRTKEL 190 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI F + ++ HPATRSFQA+RI++N+E+EE+ + L A + L G L V+SFH Sbjct: 191 ADLIANASPFREKHK-HPATRSFQAIRIYINSELEEIERALDGALEVLAPEGRLSVISFH 249 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306 SLEDR+VK F SR +V A + + +S+ K ++P +VA N R+ Sbjct: 250 SLEDRIVKNFIRHHSRGPQVPAGLPLTEAQLRSMGGRTLKSVGK--MMPPDAEVAENPRA 307 Query: 307 RSAKLRAGMR 316 RS+ LR R Sbjct: 308 RSSVLRFAER 317 >gi|257063602|ref|YP_003143274.1| S-adenosyl-methyltransferase MraW [Slackia heliotrinireducens DSM 20476] gi|256791255|gb|ACV21925.1| S-adenosyl-methyltransferase MraW [Slackia heliotrinireducens DSM 20476] Length = 318 Score = 196 bits (499), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 122/308 (39%), Positives = 181/308 (58%), Gaps = 16/308 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ- 75 H PVLL + + L+ +D+T G G+S K+ S +I +D+D A+ + Sbjct: 7 HTPVLLAECLEHLHLQTQHTFVDSTLGGAGHSYEAAKLLGPDSLLIGIDQDQMALDAARK 66 Query: 76 --ETM-RDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 ET+ D + L + F L D + + G+D ++FDLGVSS QID RGFSF++ Sbjct: 67 RLETLGEDAAPKLKLLRGNFGNLDDLLVEACVPGIDAILFDLGVSSPQIDFVSRGFSFKE 126 Query: 130 SGPLDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 PLDMRM I+A++++N N ++LTRI+ +E+ ASRIA IV R++AP +T Sbjct: 127 DAPLDMRMDPGNQTINAAELINTLNEQELTRIIYENSDERWASRIASFIVAARETAPIET 186 Query: 188 TQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 + L +I+ + S + HPA R+FQALRI VN+E+ L GL +A + L GG + Sbjct: 187 SGQLVDIIKAAIPASARRAGGHPAKRTFQALRIEVNSELTVLKSGLEAAIRWLNPGGRVA 246 Query: 247 VVSFHSLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 V+S+HSLEDR+VK FA SR+ + A P V + IT+K ++PT+E++A N Sbjct: 247 VISYHSLEDRIVKNMFAEHSRTCTCPPELPVCVCGAKP-VLKVITRKPILPTEEEIANNP 305 Query: 305 RSRSAKLR 312 R+RSAKLR Sbjct: 306 RARSAKLR 313 >gi|318057546|ref|ZP_07976269.1| 16S rRNA m(4)C1402 methyltranserfase [Streptomyces sp. SA3_actG] gi|318081147|ref|ZP_07988479.1| 16S rRNA m(4)C1402 methyltranserfase [Streptomyces sp. SA3_actF] Length = 343 Score = 196 bits (499), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 113/294 (38%), Positives = 172/294 (58%), Gaps = 12/294 (4%) Query: 18 GDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVS 72 G HVPV+L + + LL PA PG V++D T G GG+S + + ++ALDRD A+ Sbjct: 29 GRHVPVMLRRCLDLLGPALAEPGAVVVDCTLGLGGHSEALLSTFPAARLVALDRDKEALR 88 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK 129 E + + E+ L A + +L D + G V G++FDLGVSSMQ+D DRGF++ + Sbjct: 89 LAGERLAPFGERAMLAHAVYDELPDVLDRLGIPRVQGILFDLGVSSMQLDEADRGFAYAQ 148 Query: 130 SGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM +G+SA++V+N +L RIL GEEKQA RI A+V+ R+ PF + Sbjct: 149 DAPLDMRMDQTAGLSAAEVLNTYPPGELVRILRTYGEEKQARRIVSAVVREREKEPFARS 208 Query: 189 QDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 L LI++ + +K +PA R+FQALRI VN E+ L + + +A L GG + V Sbjct: 209 ARLVELIREALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVNTLAVGGRIAV 268 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDV 300 +++HSLEDRLVK+ ++ + ++P P + +T+ +P +E+V Sbjct: 269 LAYHSLEDRLVKQVLSTGATSTAPPGLPVVPERYQPR-LKLLTRGAELPAEEEV 321 >gi|182682489|ref|YP_001830649.1| S-adenosyl-methyltransferase MraW [Xylella fastidiosa M23] gi|182632599|gb|ACB93375.1| S-adenosyl-methyltransferase MraW [Xylella fastidiosa M23] gi|307578769|gb|ADN62738.1| S-adenosyl-methyltransferase MraW [Xylella fastidiosa subsp. fastidiosa GB514] Length = 328 Score = 196 bits (499), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 117/306 (38%), Positives = 171/306 (55%), Gaps = 10/306 (3%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAV 71 H HVPVL + + L LD TFG GG++R + G ++ +D+DP A+ Sbjct: 13 HLSMTHVPVLYTQAMEGLRVVENGTYLDGTFGRGGHARGVLQQLGPGGRLLVMDKDPEAI 72 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + + + +F+ L + +DGV+FDLGVSS Q+D +RGFSF K G Sbjct: 73 AMAERAF-SCDPRVVIRHGSFALLAQLAAPQSLDGVLFDLGVSSPQLDVPERGFSFAKDG 131 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM G SA+ + + + +++ +L GEEKQ+ RIA AIV R + P T Sbjct: 132 PLDMRMDPEMGESAAQWLARVSEREIADVLWTYGEEKQSRRIARAIVAYRANQPLLRTVQ 191 Query: 191 LSSLIQ----KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 L+ LI +T + + +RIHPATRSFQ +RI VN E+ +L GL +A AL+ GG L+ Sbjct: 192 LAELIASVMLRTKFGACKSRIHPATRSFQGIRIHVNRELVDLEVGLEAALAALRPGGRLV 251 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+SFHSLEDR+VK+F SR KV +P + + + ++++ N R+ Sbjct: 252 VISFHSLEDRIVKQFI-SRHSKVPPTNRRLPEVQTFVPLLRMIGRAIKADEDELEVNPRA 310 Query: 307 RSAKLR 312 RSA LR Sbjct: 311 RSAVLR 316 >gi|116334056|ref|YP_795583.1| SAM-dependent methyltransferase for cell envelope biogenesis [Lactobacillus brevis ATCC 367] gi|122269260|sp|Q03QH0|RSMH_LACBA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|116099403|gb|ABJ64552.1| SAM-dependent methyltransferase for cell envelope biogenesis [Lactobacillus brevis ATCC 367] Length = 314 Score = 196 bits (499), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 119/305 (39%), Positives = 179/305 (58%), Gaps = 14/305 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77 HV VLL++ +A L P V +D T G GG+S+ + ++ A D+D A++ +E Sbjct: 6 HVTVLLKEAVAGLAIKPTGVYVDCTLGGGGHSQRILEQLTTGHLYAFDQDQTAITYNEEH 65 Query: 78 MRDYKE--QFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 ++ Y + + + ++ F Q+Q + ++G VDG+++DLGVSS Q D DRGFS+Q P Sbjct: 66 LKTYLDAGKLTFIKSNFRQIQTELTERGITQVDGILYDLGVSSPQFDEADRGFSYQHDAP 125 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S +SA VVN+ + DL RI GEEK A IA AI + R+ AP TT L Sbjct: 126 LDMRMDQSQKLSAWIVVNEWSFNDLLRIFHRYGEEKFAKPIARAIERHREQAPIDTTGQL 185 Query: 192 SSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I++ + ++ + HPA + FQA+RI VN+E+ L L A L G + V++F Sbjct: 186 VEIIKEGIPAAARRHGGHPAKKVFQAIRIAVNDELGALEDSLEQAVSLLDVNGRISVITF 245 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH---MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 SLEDRLVK F +S + + H +IP N P F+ + K ++P++E++A N R+ Sbjct: 246 QSLEDRLVKTMFREQSS-LPELPHGIPVIPDNLQPD-FKLVNHKPILPSEEELAVNHRAH 303 Query: 308 SAKLR 312 SAKLR Sbjct: 304 SAKLR 308 >gi|71898210|ref|ZP_00680384.1| methyltransferase [Xylella fastidiosa Ann-1] gi|71731949|gb|EAO34006.1| methyltransferase [Xylella fastidiosa Ann-1] Length = 340 Score = 196 bits (499), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 117/306 (38%), Positives = 171/306 (55%), Gaps = 10/306 (3%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAV 71 H HVPVL + + L LD TFG GG++R + G ++ +D+DP A+ Sbjct: 25 HLSMTHVPVLYTQAMEGLRVVENGTYLDGTFGRGGHARGVLQQLGPGGRLLVMDKDPEAI 84 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + + + +F+ L + +DGV+FDLGVSS Q+D +RGFSF K G Sbjct: 85 AMAERAF-SCDPRVVIRHGSFALLAQLAAPQSLDGVLFDLGVSSPQLDVPERGFSFAKDG 143 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM G SA+ + + + +++ +L GEEKQ+ RIA AIV R + P T Sbjct: 144 PLDMRMDPEMGESAAQWLARVSEREIADVLWTYGEEKQSRRIARAIVAYRANQPLLRTVQ 203 Query: 191 LSSLIQKTVYFSKN----NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 L+ LI + +K+ +RIHPATRSFQ +RI VN E+ +L GL +A AL+ GG L+ Sbjct: 204 LAELIASVMLRTKSGGCKSRIHPATRSFQGIRIHVNRELVDLEVGLEAALAALRPGGRLV 263 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+SFHSLEDR+VK+F SR KV +P + + + ++++ N R+ Sbjct: 264 VISFHSLEDRIVKQFI-SRHSKVPPTNRRLPEVQTFVPLLRMIGRAIKADEDELEVNPRA 322 Query: 307 RSAKLR 312 RSA LR Sbjct: 323 RSAVLR 328 >gi|85858517|ref|YP_460719.1| S-adenosyl-methyltransferase mraW [Syntrophus aciditrophicus SB] gi|123515897|sp|Q2LR39|RSMH_SYNAS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|85721608|gb|ABC76551.1| S-adenosyl-methyltransferase mraW [Syntrophus aciditrophicus SB] Length = 315 Score = 196 bits (498), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 114/306 (37%), Positives = 178/306 (58%), Gaps = 9/306 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H PVLLE+ IA LN G + +D T G GG++ + + ++ +D D A+ ++ Sbjct: 9 HEPVLLEEAIASLNCRGGGIYVDGTVGGGGHAALILERSAPDGFLLGMDVDGDALQAAEK 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + + +L +A ++ ++ + D VDG++ DLGVSS Q+D +RGFS K PL Sbjct: 69 RLMPFGRRKTLVKANYADMRKVLADLKILQVDGILLDLGVSSHQLDAAERGFSLLKDAPL 128 Query: 134 DMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S +G SA DVVN + ++L I+ GEE A RIA AI ++R+ P ++T L+ Sbjct: 129 DMRMDSEAGRSAYDVVNTCSERELKDIIRKYGEEIMAGRIARAIAEKRKDTPIKSTTQLA 188 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +++ + ++ +IHPATR+FQALRI++NNE+ L + + + LK GG ++SFH Sbjct: 189 AIVAGALPGGFRHKKIHPATRTFQALRIYINNELSNLHRAIFDSTDCLKPGGRFSIISFH 248 Query: 252 SLEDRLVKKFFAS-RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLED LVK F S G + + + + IT+K + P +++V N RSRSA+ Sbjct: 249 SLEDSLVKNGFRSLEKGCICPADMPVCACGQSPRLKVITRKPISPCRDEVEANPRSRSAR 308 Query: 311 LRAGMR 316 LR R Sbjct: 309 LRTAER 314 >gi|254291793|ref|ZP_04962578.1| conserved hypothetical protein [Vibrio cholerae AM-19226] gi|150422305|gb|EDN14267.1| conserved hypothetical protein [Vibrio cholerae AM-19226] Length = 316 Score = 196 bits (498), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 123/309 (39%), Positives = 174/309 (56%), Gaps = 20/309 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H+ VLL + I L P + +D TFG GG+SR+ ++G + ++DRDP A++ Q+ Sbjct: 7 HISVLLNESIEGLAIKPDGIYIDGTFGRGGHSRTILAQLGPEGRLYSIDRDPQAIAEAQK 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +F++ FS + +Y VDGV+FDLGVSS Q+D +RGFSF K GP Sbjct: 67 I---DDPRFTIVHGPFSGIAEYAQRYDLVGKVDGVLFDLGVSSPQLDDAERGFSFMKDGP 123 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---PFQTT 188 LDMRM SG+ S + QA++ D+T ++ GE+K A RIA AIV+ R++ P T Sbjct: 124 LDMRMDPTSGMPVSAWLAQADLDDITWVIREFGEDKHARRIAKAIVEYRENELNEPLTRT 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ LI S + HPATR+FQA RI++N+E+EE+ LR A L G L V+ Sbjct: 184 SQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALRGASDILAPQGRLSVI 243 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSN-----AHPAVFQSITKKVVVPTQEDVAFN 303 SFHSLEDR+VK+F S V H +P A + K + P+ ++V N Sbjct: 244 SFHSLEDRMVKRFMRKESLGP-EVPHGLPLTQEQIRALGSAKMKTVGKALKPSDQEVELN 302 Query: 304 RRSRSAKLR 312 RSRS+ LR Sbjct: 303 PRSRSSVLR 311 >gi|330469297|ref|YP_004407040.1| 16S rRNA m(4)C1402 methyltranserfase [Verrucosispora maris AB-18-032] gi|328812268|gb|AEB46440.1| 16S rRNA m(4)C1402 methyltranserfase [Verrucosispora maris AB-18-032] Length = 394 Score = 196 bits (498), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 117/326 (35%), Positives = 182/326 (55%), Gaps = 11/326 (3%) Query: 2 ESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGK----VILDATFGAGGYSRSFCKM 57 E K + + G HVPVLLE+ + LL PA G+ V +DAT G G++ + + Sbjct: 18 EENKVKPVGVDMGELRGTHVPVLLERCLELLAPALGRGGRTVHVDATLGLAGHAEAVLQA 77 Query: 58 GSNVI--ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLG 112 I LDRD A+ + + + ++ L A + +L + + G VDG++FDLG Sbjct: 78 HPETILVGLDRDTEALEHARVRLARFADRVHLEHAVYDELPEVLDRLGYPTVDGILFDLG 137 Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASR 171 VSS+Q+D DRGF++ + PLDMRM + G++A +VVN +L R+L + GEEK A R Sbjct: 138 VSSLQLDAPDRGFAYAQDAPLDMRMDQTRGVTAEEVVNTYTHPELARVLRVYGEEKFAGR 197 Query: 172 IAHAIVKRRQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQ 230 IA AI++ R+ ++ L+ L+++++ ++ HPA R+FQALRI VN E+ L Sbjct: 198 IASAIIRERERVRITSSARLAELVRESIPAPARRTGGHPAKRTFQALRIEVNRELAVLET 257 Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK 290 L +A L GG L+V+S+HSLEDRL K+ A R + + F+ +++ Sbjct: 258 ALPAALDRLSVGGRLVVLSYHSLEDRLTKQALADRVRSTGPIDLPVELPGSEPTFRLLSR 317 Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMR 316 +P + +VA N R+ S +LRA R Sbjct: 318 GAELPGEAEVAANPRAASVRLRAAER 343 >gi|195389917|ref|XP_002053618.1| GJ23252 [Drosophila virilis] gi|194151704|gb|EDW67138.1| GJ23252 [Drosophila virilis] Length = 364 Score = 196 bits (498), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 131/332 (39%), Positives = 183/332 (55%), Gaps = 39/332 (11%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQE 76 HVPVL + I L P +D TFGAGG++R C + V ALDRDP A Q Sbjct: 35 HVPVLCQTAIDYLQPVASGKYIDMTFGAGGHTRRLLDSCP-DTTVYALDRDPLAHELAQR 93 Query: 77 TMR--DYKEQFSLFQATFSQLQDY-----VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 + DY + FS+L VP DG++FD G SSMQ D RGFS Sbjct: 94 MSQENDYAGRLVPLLGKFSELPQLLQSLDVPRHSFDGMLFDFGCSSMQFDEAARGFSIAH 153 Query: 130 SGPLDMRMSCS---GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP-F 185 +GPLDMRM C ISA+DV+ +A DL RIL + GEEK A +IA AIV+ R + Sbjct: 154 NGPLDMRMDCGRSGSISAADVLARAEEADLARILRVYGEEKAAKKIARAIVEARSALQRI 213 Query: 186 QTTQDLSSLIQKTVYFSKN-NRI----HPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 +TT+ L+ L+ + + +R+ H AT++FQALRIFVNNE+ E+ G+ A++ L+ Sbjct: 214 ETTRQLADLVAAVLGDGQRLDRLQRPAHAATKTFQALRIFVNNELNEINYGMLLAQELLR 273 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVM-AVRHMIPSN--AH-----PAVFQS----- 287 A G L+ ++FHSLED +VK+ +G V+ V + +P H P + +S Sbjct: 274 AQGRLVAITFHSLEDTIVKRHI---NGNVIEGVANPLPLKYCGHDLTHDPELLESFVQSN 330 Query: 288 ---ITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 + + V+ P ++A N RSRSAKLRA ++ Sbjct: 331 WRQLHRHVIQPDATEIARNSRSRSAKLRAAIK 362 >gi|17230846|ref|NP_487394.1| S-adenosyl-methyltransferase MraW [Nostoc sp. PCC 7120] gi|20138995|sp|Q8YRT9|RSMH_ANASP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|17132449|dbj|BAB75053.1| all3354 [Nostoc sp. PCC 7120] Length = 302 Score = 196 bits (498), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 124/317 (39%), Positives = 177/317 (55%), Gaps = 26/317 (8%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFA 70 I I H+PVL ++VI L PG LD T G GG+SR + +V A+D+D A Sbjct: 8 IEEPIFSHLPVLPQEVITGLVVRPGGRYLDVTVGGGGHSRLILEAAPDVKLTAVDQDGDA 67 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 ++ ++ + ++ EQ ++ F+ P DGV+ DLGVSS +D +RGFSF+ Sbjct: 68 LTAAKQELAEFGEQVKFVRSNFAAYD--FPSTSFDGVLADLGVSSYHLDTPERGFSFRHQ 125 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM +SA+DV+N + +L I GEE+ + RIA IV++R PF TT Sbjct: 126 ASLDMRMDQRQSLSAADVINDWDEVELANIFFKYGEERLSRRIARRIVEKR---PFHTTT 182 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ I +V + RIHPATR FQALRI VN+E++ L + A KAL GG + ++ Sbjct: 183 ELAEAIASSVPPKYRYGRIHPATRVFQALRIVVNDELKSLETFIEKAPKALVPGGRIAII 242 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDRLVK R+ ++ V +TKK ++ T +++A N RSRS Sbjct: 243 SFHSLEDRLVKHGL--RNSPLLKV---------------LTKKPIIATDDEIANNPRSRS 285 Query: 309 AKLRAGMRTVERSIEDD 325 AKLR + E ED+ Sbjct: 286 AKLRIAEKQAETGDEDN 302 >gi|32129733|sp|Q87AF2|RSMH_XYLFT RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263506475|sp|B2I9C0|RSMH_XYLF2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 313 Score = 196 bits (498), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 116/301 (38%), Positives = 169/301 (56%), Gaps = 10/301 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HVPVL + + L LD TFG GG++R + G ++ +D+DP A++ + Sbjct: 3 HVPVLYTQAMEGLRVVENGTYLDGTFGRGGHARGVLQQLGPGGRLLVMDKDPEAIAMAER 62 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + + +F+ L + +DGV+FDLGVSS Q+D +RGFSF K GPLDMR Sbjct: 63 AF-SCDPRVVIRHGSFALLAQLAAPQSLDGVLFDLGVSSPQLDVPERGFSFAKDGPLDMR 121 Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M G SA+ + + + +++ +L GEEKQ+ RIA AIV R + P T L+ LI Sbjct: 122 MDPEMGESAAQWLARVSEREIADVLWTYGEEKQSRRIARAIVAYRANQPLLRTVQLAELI 181 Query: 196 QKTVYFSK----NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +K +RIHPATRSFQ +RI VN E+ +L GL +A AL+ GG L+V+SFH Sbjct: 182 ASVMLRTKFGACKSRIHPATRSFQGIRIHVNRELVDLEVGLEAALAALRPGGRLVVISFH 241 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+VK+F SR KV +P + + + ++++ N R+RSA L Sbjct: 242 SLEDRIVKQFI-SRHSKVPPTNRRLPEVQTFVPLLRMIGRAIKADEDELEVNPRARSAVL 300 Query: 312 R 312 R Sbjct: 301 R 301 >gi|226943445|ref|YP_002798518.1| S-adenosyl-methyltransferase MraW [Azotobacter vinelandii DJ] gi|263446785|sp|C1DQ91|RSMH_AZOVD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|226718372|gb|ACO77543.1| S-adenosyl-methyltransferase MraW [Azotobacter vinelandii DJ] Length = 313 Score = 196 bits (498), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 121/305 (39%), Positives = 184/305 (60%), Gaps = 16/305 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSNVIAL--DRDPFAVSCGQE 76 H+ VLLE+ + L+ G LD TFG GG+SR ++G+ I L D+DP AV+ G Sbjct: 7 HITVLLEEAVDALSIREGGCYLDGTFGRGGHSRLILGRLGAGGILLGFDKDPQAVAAGL- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F + Q +F++L D + +G V GV+ DLGVSS Q+D +RGFSF GP Sbjct: 66 ALATEDARFVIVQRSFAELADEMKMRGLVGKVSGVLLDLGVSSPQLDDPERGFSFLNDGP 125 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM G+SA++ + QA+ +++ + GEE+ A R+A A+V+RRQ PF+ T DL Sbjct: 126 LDMRMDPGRGLSAAEWLAQASCEEIAHVFKDYGEERFARRMAQAVVQRRQERPFERTADL 185 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ + + +PATR+FQ LRI +NNE+ +L QGL +A + L+ GG L V+SFH Sbjct: 186 AQVLAAANPAWEKGK-NPATRAFQGLRIHINNELGDLEQGLDAALEVLEVGGRLAVISFH 244 Query: 252 SLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQSITKKVVVP---TQEDVAFNRRSR 307 SLEDR+VK+F + G+ + +P PA F+ K + P ++ ++ N R+R Sbjct: 245 SLEDRIVKRFMRRQVKGEADKLPRDLP--IRPAAFEPRLKLIGKPRYASESELKTNPRAR 302 Query: 308 SAKLR 312 SA +R Sbjct: 303 SAIMR 307 >gi|86608801|ref|YP_477563.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. JA-2-3B'a(2-13)] gi|123502541|sp|Q2JLV1|RSMH_SYNJB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|86557343|gb|ABD02300.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. JA-2-3B'a(2-13)] Length = 319 Score = 196 bits (498), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 128/313 (40%), Positives = 170/313 (54%), Gaps = 35/313 (11%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78 H VL E+V+A L P G + LD T G GG+S + + G+ V+ LDRDP A+ Q Sbjct: 24 HDSVLTEEVMAYLQPQGGGIFLDVTLGGGGHSLALLRGGAARVVGLDRDPAALQAAQARF 83 Query: 79 RDYK---EQFSLFQATFS----QLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSF 127 + L+ F+ Q + ++G DG+V DLGVSS Q+DC +RGFSF Sbjct: 84 AAEGIPGSRIQLWHLNFADFDLQQHGFRDEQGQGIPFDGIVADLGVSSPQLDCPERGFSF 143 Query: 128 QKSGPLDMRMSCSGI--SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 + GPLDMRM S +A+D VN V++L I GEE+ A RIAH I Q+ P Sbjct: 144 RGEGPLDMRMDPSAAQETAADWVNHRPVEELIEIFTRYGEERFARRIAHHI---EQARPL 200 Query: 186 QTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 TT L+ ++ + V ++ RIHPATR FQALRI VN E+E L L A LK GG Sbjct: 201 ATTTQLAQVVWQAVPPAARRGRIHPATRVFQALRIAVNRELEALETLLAQAPTWLKPGGR 260 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 L V+SFHSLEDRLVK F R + +Q +T K + P++ + N Sbjct: 261 LAVISFHSLEDRLVKWAF-RRDPR----------------WQVLTPKPLSPSELERQRNP 303 Query: 305 RSRSAKLRAGMRT 317 R+RSAKLR R+ Sbjct: 304 RARSAKLRVAARS 316 >gi|46445945|ref|YP_007310.1| S-adenosyl-methyltransferase [Candidatus Protochlamydia amoebophila UWE25] gi|51316230|sp|Q6MEG4|RSMH_PARUW RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|46399586|emb|CAF23035.1| probable S-adenosyl-methyltransferase [Candidatus Protochlamydia amoebophila UWE25] Length = 316 Score = 196 bits (498), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 116/303 (38%), Positives = 176/303 (58%), Gaps = 11/303 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCGQE 76 H VLLE+VI P KV +D T GAGG++ + + + + +D+DP A++ + Sbjct: 8 HRSVLLEEVIEAFQPVQLKVFIDGTLGAGGHAEAILEHHPEIELYLGIDQDPNALNIANK 67 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + +K++ L Q FSQ ++ + G +DG++ DLGVSSMQ+D +RGFSF K GPL Sbjct: 68 RLEKWKQKILLKQGNFSQFDIFLKEIGFSSMDGLLVDLGVSSMQLDQPERGFSFSKDGPL 127 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ G ++A+D+VN + DL +I GEEK+ A IV+ RQ TT DL+ Sbjct: 128 DMRMNPEGKLTAADIVNTWSEHDLGKIFRDYGEEKKWRLAARTIVQARQVKQILTTTDLA 187 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +L++ ++ I+P T FQALRI VN E++ L Q + LK GG + V+SFHS Sbjct: 188 NLLKPAFAWNPKKGINPLTLIFQALRICVNRELDVLEQLVSKTFDYLKPGGRVAVISFHS 247 Query: 253 LEDRLVK---KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 LEDR+VK + AS + + + + P V + + +K + P ++++ N RSRSA Sbjct: 248 LEDRIVKNELRLAASDKWETTGLGSGLFRDKKP-VAKLVNRKPICPHEKEIKENPRSRSA 306 Query: 310 KLR 312 K R Sbjct: 307 KFR 309 >gi|302344204|ref|YP_003808733.1| S-adenosyl-methyltransferase MraW [Desulfarculus baarsii DSM 2075] gi|301640817|gb|ADK86139.1| S-adenosyl-methyltransferase MraW [Desulfarculus baarsii DSM 2075] Length = 316 Score = 196 bits (498), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 121/313 (38%), Positives = 178/313 (56%), Gaps = 20/313 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQE 76 H PVLL + + + P PG + +D T GAGG++ + C ++ LDRD A++ Sbjct: 5 HRPVLLAETLRAMQPKPGGIYVDGTLGAGGHAAAILEACGPTGRLLGLDRDAQALALATA 64 Query: 77 TMRDYKE-QFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + + + L QA+F ++ + GV DG++ DLGVSSMQ+D G RGFSF GP Sbjct: 65 NLAGFDQARLRLTQASFDEIGQCLSAWGVAACDGILLDLGVSSMQLDQGQRGFSFMHDGP 124 Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 LDMRM SG A+++V ++ LT I LGEE A R A A+++ R+ P +T L+ Sbjct: 125 LDMRMGQSGPGAAELVADSDQNRLTAIFRDLGEEPLARRYAQAVIEARRQGPIVSTGRLA 184 Query: 193 SLIQKTVYFS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 ++I+ + + + ++IHPATR FQALR+ VN+E+ L + L A L GG+L V+S+ Sbjct: 185 AVIEASTPAAVRRKSKIHPATRVFQALRLAVNDELGRLERFLAGAPAWLNPGGVLAVISY 244 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV------FQSITKKVVVPTQEDVAFNR 304 HSLEDR VK RS + A P + V F + K + P+ +VA N Sbjct: 245 HSLEDRRVK-----RSLRAAANPCTCPPDLPRCVCGRRPLFDLPSHKAITPSAVEVAQNP 299 Query: 305 RSRSAKLRAGMRT 317 RSRSA+LR +RT Sbjct: 300 RSRSARLRVAVRT 312 >gi|239907971|ref|YP_002954712.1| S-adenosyl-methyltransferase MraW [Desulfovibrio magneticus RS-1] gi|263446299|sp|C4XK86|RSMH_DESMR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|239797837|dbj|BAH76826.1| S-adenosyl-methyltransferase MraW [Desulfovibrio magneticus RS-1] Length = 324 Score = 196 bits (498), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 123/308 (39%), Positives = 170/308 (55%), Gaps = 11/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H PVLL +VI LL PG ILDAT G GG+SR + V+ LDRD A+S Sbjct: 7 HKPVLLREVIELLGIRPGMKILDATVGLGGHSRGMLEAAGGEGQVLGLDRDREALSEAGR 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + Y ++ L + S+ + + G VD + D G+SS+Q+D +RGF F GPL Sbjct: 67 WLAPYGDRVRLVRTRSSRFPAVLAEAGWEKVDAALLDAGMSSLQLDDPERGFGFLHDGPL 126 Query: 134 DMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 DMRM G +A +VN A+ L I+ GE+ QA RIA AIV R+ TT L Sbjct: 127 DMRMGAEDGGETAEGLVNLASYARLCEIIREYGEDPQAGRIARAIVSVREKEAITTTARL 186 Query: 192 SSLIQKT--VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 + ++ + + R HPATR+FQALR+ VN E+ EL L++ L GG + V+S Sbjct: 187 AEVVWQAYPAKWRATARQHPATRTFQALRMAVNEELAELEAFLKAIPDHLAPGGRVAVIS 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDRLVK+ F + + + R ++ H A + +TKK V+ +E+V N R+RS Sbjct: 247 FHSLEDRLVKRAFRAEATDCICPREQVVCVCGHRARLRILTKKPVMAGEEEVRDNSRARS 306 Query: 309 AKLRAGMR 316 AKLR R Sbjct: 307 AKLRVAER 314 >gi|166365785|ref|YP_001658058.1| S-adenosyl-methyltransferase MraW [Microcystis aeruginosa NIES-843] gi|263456493|sp|B0JKS7|RSMH_MICAN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|166088158|dbj|BAG02866.1| S-adenosyl-L-methionine-dependent methyltransferase [Microcystis aeruginosa NIES-843] Length = 292 Score = 196 bits (498), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 121/303 (39%), Positives = 179/303 (59%), Gaps = 29/303 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77 H+ VL +++IA LN PG LD T G GG+SR + + V A+DRD A+ + + Sbjct: 7 HISVLSQELIAGLNIQPGGHYLDLTLGGGGHSRLLLEAHPETTVTAIDRDQSALEAAKIS 66 Query: 78 MRDYKE-QFSLFQATFSQLQDYV-PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + Y + + +L+ F+ DY + DG++ DLGVSS Q D +RGFSF+ + LDM Sbjct: 67 LAPYLDSRLTLWWGNFA---DYDGQNSSFDGIIADLGVSSPQFDQSERGFSFRHTAALDM 123 Query: 136 RMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM C ++A+D++N + K+L + GEE+ + IA +IV++R PF TT +L+++ Sbjct: 124 RMDRCQSLTAADIINHWHEKELADLFYQYGEERLSRPIARSIVQKR---PFTTTTELAAV 180 Query: 195 IQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 I +V S + RIHPATR FQALRI VN E++ L Q L A LK+ G++ ++SFHSL Sbjct: 181 IASSVPASYRYGRIHPATRVFQALRIAVNQELDSLQQLLDQAPHWLKSRGIIAMISFHSL 240 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 EDRL+K F R + + ITKK ++P++E+ A N RSRSAKLR Sbjct: 241 EDRLIKYGF--RENNSLKI---------------ITKKPIIPSREEQAKNPRSRSAKLRI 283 Query: 314 GMR 316 + Sbjct: 284 AQK 286 >gi|296331089|ref|ZP_06873563.1| S-adenosyl-methyltransferase MraW [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674244|ref|YP_003865916.1| S-adenosyl-dependent methyltransferase active on membrane-located substrates [Bacillus subtilis subsp. spizizenii str. W23] gi|296151733|gb|EFG92608.1| S-adenosyl-methyltransferase MraW [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412488|gb|ADM37607.1| S-adenosyl-dependent methyltransferase active on membrane-located substrates [Bacillus subtilis subsp. spizizenii str. W23] Length = 311 Score = 196 bits (498), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 118/303 (38%), Positives = 175/303 (57%), Gaps = 11/303 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H VLL + + LN P +D T G G+S + S +IA D+D A+ +E Sbjct: 4 HKTVLLRETVDGLNIKPDGTYVDCTLGGAGHSTYLLQQLSEKGRLIAFDQDDMALQHAKE 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + DYK Q L ++ F L++ + ++G VDG++FDLGVSS Q+D +RGFS+ PL Sbjct: 64 ALSDYKGQLILIKSNFRYLKECLKEQGITEVDGILFDLGVSSPQLDTPERGFSYHHDAPL 123 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S ++A +VVN +DL RI GEEK + +IA I + R +P QTT L Sbjct: 124 DMRMDQSATLTAKEVVNDWRYEDLVRIFFKYGEEKFSKQIARKIEEARIKSPIQTTGQLV 183 Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 LI+ + ++ + HPA R FQA+RI VN+E++ + L A + LK GG + V++FH Sbjct: 184 DLIKDAIPAPARRSGGHPAKRVFQAIRIAVNDELKVFEEALEQAIEVLKPGGRVSVITFH 243 Query: 252 SLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+ K F +S ++ +IP P + + IT+K + +QE++ N R+RSA Sbjct: 244 SLEDRICKSTFKEKSSLPELPPGLPVIPEEFEPEL-KLITRKPITASQEELEENNRARSA 302 Query: 310 KLR 312 KLR Sbjct: 303 KLR 305 >gi|75909403|ref|YP_323699.1| S-adenosyl-methyltransferase MraW [Anabaena variabilis ATCC 29413] gi|123608960|sp|Q3M882|RSMH_ANAVT RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|75703128|gb|ABA22804.1| methyltransferase [Anabaena variabilis ATCC 29413] Length = 305 Score = 196 bits (497), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 127/329 (38%), Positives = 184/329 (55%), Gaps = 28/329 (8%) Query: 1 MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN 60 M+S S K++S + H+PVL ++V+ L G LDAT G GG+SR + + Sbjct: 1 MKSHSAKSLS--VEEATFSHLPVLPQEVVTGLAVRSGGHYLDATVGGGGHSRLILEAAPD 58 Query: 61 V--IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQI 118 V A+D+D A++ ++ + ++ EQ ++ F+ + P DGV+ DLGVSS + Sbjct: 59 VRLTAVDQDGDALTAAKKELAEFGEQVKFVRSNFAAYE--FPVASFDGVLADLGVSSYHL 116 Query: 119 DCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177 D +RGFSF+ LDMRM +SA+DV+N + +L I GEE+ + RIA IV Sbjct: 117 DTPERGFSFRHQANLDMRMDQRQSLSAADVINDWDEVELANIFFKYGEERLSRRIARRIV 176 Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236 ++R PF TT +L+ I +V + RIHPATR FQALRI VN+E++ L L A Sbjct: 177 EKR---PFHTTTELAEAIASSVPPKYRYARIHPATRVFQALRIVVNDELKSLETFLEKAP 233 Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296 KAL GG + ++SFHSLEDRLVK + PS + +TKK ++ T Sbjct: 234 KALVPGGRIAIISFHSLEDRLVKHGLRNS-----------PS------LKVLTKKPIIAT 276 Query: 297 QEDVAFNRRSRSAKLRAGMRTVERSIEDD 325 + ++A N RSRSAKLR + E ED+ Sbjct: 277 EAEIANNPRSRSAKLRIAEKKAEMGQEDN 305 >gi|238786715|ref|ZP_04630516.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia frederiksenii ATCC 33641] gi|238725083|gb|EEQ16722.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia frederiksenii ATCC 33641] Length = 320 Score = 196 bits (497), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 124/309 (40%), Positives = 182/309 (58%), Gaps = 17/309 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + LN + +D TFG GG+SR ++G +IA+DRDP A+ + Sbjct: 14 HTSVLLDEAVNGLNIRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDRDPQAIEAAKS 73 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +FS+ FS L YV + +DGV+ DLGVSS Q+D +RGFSF + GP Sbjct: 74 IT---DPRFSIVHGPFSDLAHYVRELDLVGRIDGVLLDLGVSSPQLDDPERGFSFMRDGP 130 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G+SA+D + +A+ D+ +L GEE+ A R+A AIV+R + P T++L Sbjct: 131 LDMRMDPTRGLSAADWLMKASADDIAWVLKTFGEERFAKRLAKAIVERNLTQPMTRTKEL 190 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI F + ++ HPATRSFQA+RI++N+E+EE+ + L A + L G L V+SFH Sbjct: 191 ADLIANASPFREKHK-HPATRSFQAIRIYINSELEEIERALDGALEVLAPEGRLSVISFH 249 Query: 252 SLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKV--VVPTQEDVAFNRRSR 307 SLEDR+VK F SR +V A + + +S+ K V ++P +VA N R+R Sbjct: 250 SLEDRIVKNFIRHHSRGPQVPAGLPLTEAQLRSMGGRSL-KSVGKMMPPDAEVAENPRAR 308 Query: 308 SAKLRAGMR 316 S+ LR R Sbjct: 309 SSVLRFAER 317 >gi|297616973|ref|YP_003702132.1| S-adenosyl-methyltransferase MraW [Syntrophothermus lipocalidus DSM 12680] gi|297144810|gb|ADI01567.1| S-adenosyl-methyltransferase MraW [Syntrophothermus lipocalidus DSM 12680] Length = 307 Score = 196 bits (497), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 121/301 (40%), Positives = 177/301 (58%), Gaps = 8/301 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMG--SNVIALDRDPFAVSCGQE 76 HVPVLLE+ +++L P V +D T G GG+ K+G + +I +D+D A+ ++ Sbjct: 2 HVPVLLEEAVSMLALQPDGVYVDCTVGGGGHLACLVQKLGEKATIIGIDKDAKALEEARK 61 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + + L F +LQ + G+ G+V DLGVSS Q+D RGFS+Q+ GPL Sbjct: 62 KLANVSSKLILIHGDFRRLQVILKMHGISEIHGIVLDLGVSSFQLDDASRGFSYQEEGPL 121 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +SA +VN+ + + L I+ LGEE+ A RIA IV+ RQ P TT +L Sbjct: 122 DMRMNTDQQLSAWHLVNEWSEERLALIIRELGEERYARRIAREIVRERQQRPINTTFELV 181 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I++ V HPA R+FQALRI VN E+E L + L A + L + G + V++FHS Sbjct: 182 EVIKRAVPAQAKKDKHPARRTFQALRIAVNEELEALEEVLPQAVEVLASEGRIAVITFHS 241 Query: 253 LEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK FF S G + + + H A + +TK+ + PT+ ++A N RSRSAKL Sbjct: 242 LEDRIVKTFFKRESLGCLCPSDQPVCTCNHRARLKIVTKRPITPTEAELARNPRSRSAKL 301 Query: 312 R 312 R Sbjct: 302 R 302 >gi|220909120|ref|YP_002484431.1| S-adenosyl-methyltransferase MraW [Cyanothece sp. PCC 7425] gi|263446188|sp|B8HTI9|RSMH_CYAP4 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|219865731|gb|ACL46070.1| S-adenosyl-methyltransferase MraW [Cyanothece sp. PCC 7425] Length = 294 Score = 196 bits (497), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 128/303 (42%), Positives = 173/303 (57%), Gaps = 32/303 (10%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77 H+PVL + VI LN PG LDAT G GG+SR + S V ALDRD A+ + Sbjct: 12 HIPVLSQAVIQGLNLRPGGHYLDATVGGGGHSRLILEAAPESQVTALDRDQQALQAARSA 71 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++ Y E+ +Q+ F+ DY + G DG++ DLGVSS Q+D RGFSF+ PLD Sbjct: 72 LQPYGERVQFYQSNFA---DY--ESGSLRFDGILADLGVSSAQLDQPQRGFSFRADAPLD 126 Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM ++A+++VN A+ ++L I GEE+ A RIA IV+ R P TT L+S Sbjct: 127 MRMDQRQSLTAAELVNTASAEELADIFYYYGEERFARRIARRIVQHR---PLYTTAQLAS 183 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 L+ + + S++ IHPATR FQALRI VN E+E L Q L + L GG L V+SFHSL Sbjct: 184 LVSRALP-SRSQSIHPATRVFQALRIAVNRELESLEQFLERSPHWLVTGGRLAVISFHSL 242 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 EDR VK S + Q +TKK ++P+ E+++ N R+RSAKLR Sbjct: 243 EDRRVKHGLRDHS-----------------LLQVLTKKPILPSSEEISANPRARSAKLRL 285 Query: 314 GMR 316 R Sbjct: 286 AQR 288 >gi|8134827|sp|O69560|RSMH_MYCLE RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263460319|sp|B8ZQP2|RSMH_MYCLB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|3080481|emb|CAA18676.1| hypothetical protein MLCB268.10c [Mycobacterium leprae] Length = 340 Score = 196 bits (497), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 120/317 (37%), Positives = 174/317 (54%), Gaps = 20/317 (6%) Query: 20 HVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPF 69 HVPV ++ + LL PA +++DAT G GG++ F G +I LDRDP Sbjct: 10 HVPVFAQRCVTLLAPALTRHHADGSNAILVDATLGVGGHAERFLTEFPGLRLIGLDRDPS 69 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQ------DYVPDKGVDGVVFDLGVSSMQIDCGDR 123 A+ + + + ++ +L + L Y + VDGV+FDLGVSSMQ+DC +R Sbjct: 70 ALDIARTRLMRFADRVTLIHTRYDNLAVALNKFGYAAVESVDGVLFDLGVSSMQLDCAER 129 Query: 124 GFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GFS+ + PLDMRM S +SA+D+VN + L IL GEE+ A RIA IV+RR Sbjct: 130 GFSYAQDVPLDMRMDPWSPVSAADIVNNYDEAALADILRRYGEERFARRIAAHIVRRRAH 189 Query: 183 APFQTTQDLSSLIQKTVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 PF +T +L +L+ + + + RI HPA R+FQALRI VN+E+ L+ L +A AL Sbjct: 190 TPFTSTAELVALLYQAIP-APARRIGGHPAKRTFQALRIAVNDELNSLSNVLPAALDALT 248 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300 G L+V+++ SLEDR+VK+ FA I H F+ +T+ ++ Sbjct: 249 VAGRLVVLAYQSLEDRIVKRVFADAVSSRTPAGLPIELPGHGPRFRLLTRGAEHADAAEI 308 Query: 301 AFNRRSRSAKLRAGMRT 317 N RS + +LRA RT Sbjct: 309 ECNPRSAAVRLRALQRT 325 >gi|307211743|gb|EFN87738.1| Putative S-adenosyl-L-methionine-dependent methyltransferase CG14683 [Harpegnathos saltator] Length = 325 Score = 196 bits (497), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 122/325 (37%), Positives = 181/325 (55%), Gaps = 34/325 (10%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQETMRDY 81 + ++V++ + P+PGK +D TFGAGG++ + ++ ALDRD A Q+ + Y Sbjct: 1 MAQEVLSYIEPSPGKTYIDMTFGAGGHATKLLEHSPDIKIFALDRDSVAHEYAQKLSQKY 60 Query: 82 KEQFSLFQATFSQL-----QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 Q FS+L Q + +DG +FD G SSMQ D G RGFS K GPLDMR Sbjct: 61 PGQVIPLLGKFSELPQLLKQHNIGRNSIDGFLFDFGCSSMQFDIGIRGFSLSKDGPLDMR 120 Query: 137 MS---CSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK-RRQSAPFQTTQDL 191 M CSG +A+DV+ +A +DL RI+ G+EK+A +IA AI++ R +TT++L Sbjct: 121 MDGFRCSGQPTAADVLERATEEDLARIIKFYGQEKRAKKIARAIIEARYMFRKLETTREL 180 Query: 192 SSLIQKTV--YFSKNNR---IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 + LI+ T+ K+N H AT++FQALRIFVNNE+ E+ + A LK G LI Sbjct: 181 AELIESTLSDEIRKDNLGRFSHNATKTFQALRIFVNNELNEINYAMLLARIYLKVTGRLI 240 Query: 247 VVSFHSLEDRLVKKFFA---------------SRSGKVMAVRHMIPSNAHPAVFQSITKK 291 +SFHSLED +VK+ + + GK+ + P ++ + K Sbjct: 241 TISFHSLEDTIVKRHISGNITDNVANTISLKYANPGKIFDANELEMLTQTP--WKMMHKH 298 Query: 292 VVVPTQEDVAFNRRSRSAKLRAGMR 316 V++PT E++ N R+RSAK RA ++ Sbjct: 299 VLLPTAEEIETNPRARSAKFRAILK 323 >gi|30248986|ref|NP_841056.1| methyltransferase family protein [Nitrosomonas europaea ATCC 19718] gi|42559461|sp|Q82VT1|RSMH_NITEU RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|30138603|emb|CAD84894.1| Methyltransferase family [Nitrosomonas europaea ATCC 19718] Length = 317 Score = 196 bits (497), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 120/306 (39%), Positives = 179/306 (58%), Gaps = 16/306 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQE 76 HVPVLLE+ LN + +DATFG GG+SR ++G + +IA D+DP A+S + Sbjct: 2 HVPVLLEEAADALNIRADGIYVDATFGRGGHSRLILSRLGESGRLIAFDKDPAAISAAR- 60 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++RD E+F +++Q++ + V DG++ DLGVSS+Q+D RGFSF+ GPL Sbjct: 61 SIRD--ERFQAVHGSYAQIRTALESLSVSRIDGILLDLGVSSIQLDEASRGFSFRHDGPL 118 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S G +A++ + +L ++ GEE+ A +IA AIV + P TT L+ Sbjct: 119 DMRMDSSRGKTAAEWLATVTETELKEVIRTYGEERYAGQIAGAIVMAQTRQPIVTTFQLA 178 Query: 193 SLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 ++ V + ++ R HPATR+FQA+RI +N E+EEL+ L + L A G L+V+SF Sbjct: 179 EIVAAVVRKFGHRDGRQHPATRTFQAIRIHLNQELEELSVTLPQCVELLNANGRLVVISF 238 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMI----PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 HSLEDR+VK+F ++G R + S H I K + P + +VA N R+ Sbjct: 239 HSLEDRIVKRFMRMQAGTDTLPRKLPVRDEESRMHSRQTLQIIGKKIRPGENEVAANPRA 298 Query: 307 RSAKLR 312 RSA +R Sbjct: 299 RSAVMR 304 >gi|291166340|gb|EFE28386.1| S-adenosyl-methyltransferase MraW [Filifactor alocis ATCC 35896] Length = 310 Score = 196 bits (497), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 114/305 (37%), Positives = 177/305 (58%), Gaps = 8/305 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77 H PV+L + I +LN P + +D T G G+S K +IA D+D A+ + Sbjct: 5 HKPVMLNECIDMLNIVPSGIYVDGTLGGAGHSLEIVKRLDSGKLIAFDQDIEAIKNAKIK 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++ Y+++ L F ++ + D + +G++ DLGVSS Q+D +RGFS++ PLD Sbjct: 65 LKSYEDKVILIHDNFRNIKKSLEDIDIFRINGLLLDLGVSSYQLDSPERGFSYRYDAPLD 124 Query: 135 MRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM+ S ISA +VN + +DL RI+ GEEK ASRIA IV+ R P TT +L Sbjct: 125 MRMNQSSQISAKYIVNTYSEEDLKRIIRDYGEEKWASRIAQFIVEERMKKPIDTTGELVQ 184 Query: 194 LIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ + ++ HPA R+FQA+RI N+E++ + L SA + L GG++ V++FHS Sbjct: 185 IIKAAIPKKAREEEQHPAKRTFQAIRIETNHELDVIHDVLESAVELLLPGGVISVITFHS 244 Query: 253 LEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK FF S G + + + H A + +K +VP++E++ N RSRSAK+ Sbjct: 245 LEDRIVKNFFRDESTGCICSPEIPVCVCNHQARLRLAHRKPLVPSEEELRENPRSRSAKV 304 Query: 312 RAGMR 316 R ++ Sbjct: 305 RGAIK 309 >gi|299139518|ref|ZP_07032692.1| S-adenosyl-methyltransferase MraW [Acidobacterium sp. MP5ACTX8] gi|298598446|gb|EFI54610.1| S-adenosyl-methyltransferase MraW [Acidobacterium sp. MP5ACTX8] Length = 324 Score = 195 bits (496), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 130/310 (41%), Positives = 180/310 (58%), Gaps = 28/310 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HVPVLLE+ + L PG V +DAT G GG+S + + +I DRDP A++ Q Sbjct: 20 HVPVLLEESLKYLKVRPGGVYVDATLGLGGHSAAIARQLGGAGKLICFDRDPEAMAKAQA 79 Query: 77 TMRDYKE-------QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 + E Q FS++ + V +DG++ D GVSS+Q+D RGFSF+ Sbjct: 80 RLAAVAEELGPEMPQVRYVPRAFSEIDEEVEPNSLDGLLADFGVSSLQLDEAHRGFSFRT 139 Query: 130 SGPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM S S ++A VVNQA+ +DL ++ GEE+++ RIA AIV+ R P +TT Sbjct: 140 DGPLDMRMDSRSELTAQQVVNQADEEDLANLIYEFGEERRSRRIARAIVRAR---PIETT 196 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ +I K ++IHPATR+FQALRI VN+EI ++ L SAE LK GG ++++ Sbjct: 197 AELARVISAVTPSMKGDKIHPATRTFQALRIRVNDEIGQIQSLLHSAESLLKPGGRVVLI 256 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDR VK F R G A + +TKK VV +++ N RSRS Sbjct: 257 SFHSLEDRPVKDAF--REG------------AKAGRLEILTKKPVVAGEQESLRNPRSRS 302 Query: 309 AKLRAGMRTV 318 AKLRA + + Sbjct: 303 AKLRAAEKVL 312 >gi|219870383|ref|YP_002474758.1| S-adenosyl-methyltransferase MraW [Haemophilus parasuis SH0165] gi|263456048|sp|B8F3A8|RSMH_HAEPS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|219690587|gb|ACL31810.1| S-adenosyl-methyltransferase MraW involved in cell envelope biogenesis [Haemophilus parasuis SH0165] Length = 312 Score = 195 bits (496), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 123/306 (40%), Positives = 179/306 (58%), Gaps = 18/306 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQE 76 H+ VLL + + L P + +D TFG GG+SR K+G +IA+DRDP A++ Sbjct: 7 HITVLLHEAVDGLAIKPNGIYVDGTFGRGGHSRLILSKLGEQGRLIAIDRDPRAIAEAN- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 T+ D + F + + FS + D + +DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 66 TITDPR--FQIVHSAFSSIPDICDELNLVGKIDGILLDLGVSSPQLDEAERGFSFMRDGP 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP--FQTTQ 189 LDMRM + G+SA + + Q +V DL +L GEE+ A RIA A+V +SA T Sbjct: 124 LDMRMDTTKGLSAMEWLAQVSVDDLAWVLKEFGEERFAKRIAQAVVSYNKSATEKISRTL 183 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I V F K+ HPATRSFQA+RI++N+E++EL + L SA L G L ++S Sbjct: 184 QLAQIIADVVPF-KDKHKHPATRSFQAIRIYINSELDELEKALNSALTVLAPEGRLSIIS 242 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIP---SNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 FHSLEDR+VK+F +S K V +P S + + K ++P++ ++ N RS Sbjct: 243 FHSLEDRMVKQFMRKQS-KGETVPKGLPILESELNKNIPLKTVGKAIMPSEAEIEANPRS 301 Query: 307 RSAKLR 312 RSA LR Sbjct: 302 RSAVLR 307 >gi|95930740|ref|ZP_01313473.1| methyltransferase [Desulfuromonas acetoxidans DSM 684] gi|95133220|gb|EAT14886.1| methyltransferase [Desulfuromonas acetoxidans DSM 684] Length = 318 Score = 195 bits (496), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 127/303 (41%), Positives = 179/303 (59%), Gaps = 9/303 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H VL + + LL+ G +LD T G G+SR + + +I LDRD A++ G E Sbjct: 8 HQSVLPTETLELLDLHAGDTVLDGTLGGAGHSRLILEATAPNGVLIGLDRDHDALANGAE 67 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQKSGPL 133 + Y ++ L A F+ V + G+DG+ + DLGVSS Q+D +RGFSF+ PL Sbjct: 68 VLAAYGDRVILRHANFADANQVVEELGLDGLNGMLLDLGVSSYQLDQAERGFSFRADAPL 127 Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM G +A+DVVN A V++LT I GEE+ A RIA I + RQ P TT L+ Sbjct: 128 DMRMDQQGDETAADVVNTATVEELTLIFKKYGEERWAGRIARRIERIRQQTPITTTFQLA 187 Query: 193 SLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 L+++TV + RIHPATR FQALRI VN+E++ +A+G+ LK GG+L V+SFH Sbjct: 188 ELVKETVPGGRVPARIHPATRVFQALRIRVNDELDSVAKGVEQGIGLLKPGGVLAVISFH 247 Query: 252 SLEDRLVKKFFASRSGK-VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK F R+ V R + + A + +T++ V ++ ++A N RSRSA Sbjct: 248 SLEDRIVKNIFRHRASPCVCPPRLPMCACGKKADVEVLTRRGVRASETEIAENPRSRSAV 307 Query: 311 LRA 313 LRA Sbjct: 308 LRA 310 >gi|282882847|ref|ZP_06291452.1| S-adenosyl-methyltransferase MraW [Peptoniphilus lacrimalis 315-B] gi|281297258|gb|EFA89749.1| S-adenosyl-methyltransferase MraW [Peptoniphilus lacrimalis 315-B] Length = 320 Score = 195 bits (496), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 120/306 (39%), Positives = 175/306 (57%), Gaps = 10/306 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 HV VL +V+ LN K+ +DAT G G+S+ K+ +N +I +D+D A+ QE Sbjct: 5 HVSVLYNEVLENLNIRENKIYMDATIGGAGHSKGIAKILNNSGLLIGIDQDKDAIKKSQE 64 Query: 77 TMRDYKEQFSLFQAT---FSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + +Y E LF F ++ D + K VDG++ DLGVSS Q D G+RGFS++ L Sbjct: 65 VLSEY-ENVKLFNTNYKNFEEILDSLHIKKVDGILLDLGVSSYQFDKGERGFSYRFDSEL 123 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S ++A +VN+ + +L RI+ GEE A RI+ IV+ R+ TT DL Sbjct: 124 DMRMDKSSPLTAKTIVNEYSKDELYRIIKEYGEENWAKRISEFIVQERKIKKINTTFDLV 183 Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+K V ++ + HPA R+FQALRI VN+E+ L + + + L GG L ++SFH Sbjct: 184 EVIKKAVPKGARRDGPHPAKRAFQALRIEVNDELNVLKKSIYKFVERLNPGGRLAIISFH 243 Query: 252 SLEDRLVKKFFAS-RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK F S V +I + + IT+K +VPT+E++ N RS SAK Sbjct: 244 SLEDRIVKNAFRYLYSDCVCPPEQIICTCDKKREIEIITRKPIVPTKEEIKNNNRSHSAK 303 Query: 311 LRAGMR 316 LR + Sbjct: 304 LRVAEK 309 >gi|322421370|ref|YP_004200593.1| S-adenosyl-methyltransferase MraW [Geobacter sp. M18] gi|320127757|gb|ADW15317.1| S-adenosyl-methyltransferase MraW [Geobacter sp. M18] Length = 312 Score = 195 bits (496), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 119/303 (39%), Positives = 174/303 (57%), Gaps = 9/303 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H+ VL ++V+ LL P G + +D T G G++ + +I DRD A++ +E Sbjct: 6 HISVLPDEVLGLLAPKSGGIYVDGTLGGAGHAGLILAASAPQGQLIGFDRDAEAIAVAKE 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + ++ +FQ FS + + + GVD G V DLGVSS Q+D +RGFSFQ PL Sbjct: 66 RLAPFGDRVRIFQRNFSSIAQTLAEIGVDAIDGFVLDLGVSSHQLDKDERGFSFQADAPL 125 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM SG SA+D+VN + +L RI+ GEE+ A R+A IVK R+ P +TT L Sbjct: 126 DMRMDRSSGPSAADLVNTLSEAELNRIIAEYGEERWAKRVASFIVKAREERPIETTMQLV 185 Query: 193 SLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + +K R+HPATR+FQ LRI VN E++ L GL K LK GG V+SFH Sbjct: 186 DIIKGAIPKAKWEERLHPATRTFQGLRIAVNEELKSLQLGLTDLLKLLKRGGRGAVISFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK+ F + + + I ++ +TKK + ++++ N RSRSA+ Sbjct: 246 SLEDRIVKEAFRDAAAGCTCPKELPICVCGRVPQYKVLTKKALKAGEKELNANPRSRSAR 305 Query: 311 LRA 313 LR Sbjct: 306 LRG 308 >gi|251792015|ref|YP_003006735.1| S-adenosyl-methyltransferase MraW [Aggregatibacter aphrophilus NJ8700] gi|263446623|sp|C6AKG2|RSMH_AGGAN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|247533402|gb|ACS96648.1| S-adenosyl-methyltransferase MraW [Aggregatibacter aphrophilus NJ8700] Length = 322 Score = 195 bits (496), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 134/318 (42%), Positives = 182/318 (57%), Gaps = 28/318 (8%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQ 75 +H VLL + + L + +D TFG GG+SR K+ +N +IA+DRDP AV+ Q Sbjct: 11 EHSTVLLHETVDGLALKENGIYIDGTFGRGGHSRLILSKLSANGKLIAIDRDPKAVAEAQ 70 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +F + TFS++ +G +DG++ DLGVSS Q+D RGFSF K G Sbjct: 71 KIQ---DPRFQIEHNTFSEILSICEKRGLVGKIDGILLDLGVSSPQLDDAARGFSFMKDG 127 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA-----PF 185 PLDMRM S GISA++ + Q + +DL +L GEE+ A +IA AIV +SA F Sbjct: 128 PLDMRMDDSKGISAAEWLQQVSEQDLAWVLKTFGEERFAKKIAKAIVNYNKSAVQNGSEF 187 Query: 186 QT-TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 T T L+ LI TV F K+ HPATRSFQA+RIF+N E++EL + L+SA L G Sbjct: 188 LTRTLQLAELIAHTVPF-KDKHKHPATRSFQAIRIFINAELDELEKVLQSALTVLAPAGR 246 Query: 245 LIVVSFHSLEDRLVKKFFASRSG-----KVMAVRH-MIPSNAHPAVFQSITKKVVVPTQE 298 L V+SFHSLEDR+VK F +S K + +R I N V K ++PT Sbjct: 247 LSVISFHSLEDRMVKHFMRKQSQGREIPKGLPLREDQIQRNQTLKVI----GKAIMPTDA 302 Query: 299 DVAFNRRSRSAKLRAGMR 316 ++A N R+RSA LR R Sbjct: 303 EIAQNPRARSAVLRVAER 320 >gi|238754428|ref|ZP_04615783.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia ruckeri ATCC 29473] gi|238707257|gb|EEP99619.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia ruckeri ATCC 29473] Length = 304 Score = 195 bits (496), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 123/310 (39%), Positives = 180/310 (58%), Gaps = 25/310 (8%) Query: 23 VLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQETMR 79 +LL++ + LN + +D TFG GG+SR ++G +IA+DRDP A+ + Sbjct: 1 MLLDEAVNGLNIRSNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDRDPQAIEAAKSIT- 59 Query: 80 DYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 +FS+ FS+L YV + +DGV+ DLGVSS Q+D +RGFSF + GPLDM Sbjct: 60 --DPRFSIVHGPFSELAHYVRELDLVGKIDGVLLDLGVSSPQLDDPERGFSFMRDGPLDM 117 Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM S GISA++ + +A D+ +L GEE+ A R+A AIV+R + P T +L++L Sbjct: 118 RMDPSRGISAAEWLMKAGADDIAWVLKTFGEERFAKRLARAIVERNLTQPMTRTTELANL 177 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 I F + ++ HPATRSFQA+RI++N+E+EE+ + L A + L G L V+SFHSLE Sbjct: 178 IANASPFREKHK-HPATRSFQAIRIYINSELEEIERALEGALEVLAPAGRLSVISFHSLE 236 Query: 255 DRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKK------VVVPTQEDVAFNRRS 306 DR+VK F SR KV A + QS+ + ++P+ +VA N R+ Sbjct: 237 DRIVKNFIRNQSRGPKVPAGLPLTEEQ-----LQSLGGRNLKAVGKMMPSDAEVAENPRA 291 Query: 307 RSAKLRAGMR 316 RS+ LR R Sbjct: 292 RSSVLRFAER 301 >gi|123441024|ref|YP_001005013.1| S-adenosyl-methyltransferase MraW [Yersinia enterocolitica subsp. enterocolitica 8081] gi|263504660|sp|A1JJI5|RSMH_YERE8 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|122087985|emb|CAL10773.1| conserved hypothetical protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 320 Score = 195 bits (496), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 123/313 (39%), Positives = 182/313 (58%), Gaps = 19/313 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + LN + +D TFG GG+SR ++G +IA+DRDP A+ + Sbjct: 14 HTSVLLDEAVNGLNIRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDRDPQAIEAAKS 73 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +FS+ FS L YV + ++GV+ DLGVSS Q+D +RGFSF + GP Sbjct: 74 IT---DPRFSIVHGPFSDLAHYVRELNLVGRINGVLLDLGVSSPQLDDPERGFSFMRDGP 130 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + GISA++ + +A+ D+ +L GEE+ A R+A AIV+R + P T++L Sbjct: 131 LDMRMDPTRGISAAEWLMKASADDIAWVLKTFGEERFAKRLAKAIVERNLTQPMTRTKEL 190 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI F + ++ HPATRSFQA+RI++N+E+EE+ + L A + L G L V+SFH Sbjct: 191 ADLIANASPFREKHK-HPATRSFQAIRIYINSELEEIERALDGALEVLAPEGRLSVISFH 249 Query: 252 SLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306 SLEDR+VK F SR +V A + + +S+ K ++P +VA N R+ Sbjct: 250 SLEDRIVKNFIRHHSRGPQVPAGLPLTEAQLRSMGGRTLKSVGK--MMPPDAEVAENPRA 307 Query: 307 RSAKLRAGMRTVE 319 RS+ LR R E Sbjct: 308 RSSVLRFAERIKE 320 >gi|296122349|ref|YP_003630127.1| S-adenosyl-methyltransferase MraW [Planctomyces limnophilus DSM 3776] gi|296014689|gb|ADG67928.1| S-adenosyl-methyltransferase MraW [Planctomyces limnophilus DSM 3776] Length = 298 Score = 195 bits (495), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 123/315 (39%), Positives = 177/315 (56%), Gaps = 34/315 (10%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76 H+PV+L +VI L PG V+ D T GAGG+SR K +GS ++A DRDP +S ++ Sbjct: 2 HLPVMLREVIQQLQLEPGLVVADGTLGAGGHSREILKAIGSAGMLLAFDRDPMMISLAEK 61 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG--------VDGVVFDLGVSSMQIDCGDRGFSFQ 128 T+ E + Q ++ ++D + VD ++ DLG SS Q+ +RGFSFQ Sbjct: 62 TV--CGENVHIHQGSYIDIRDVLQRHTQATGRPPLVDRLLLDLGYSSDQLADRERGFSFQ 119 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 GPLD+R S S +SA+ + AN ++ R+L GEE A R+ AI + QT Sbjct: 120 TEGPLDLRFSTSENVSAAHWLATANDSEIVRVLTEFGEEPFADRLGPAIGLAARRGELQT 179 Query: 188 TQDLSSLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRS-AEKALKAGGL 244 T+DL ++++TV +N HPATR FQALRI VN+E+ ++ L A + L GG+ Sbjct: 180 TKDLVRVVEQTVPPAILRNAEKHPATRVFQALRIQVNDELTHVSTMLNQIAPEVLAPGGI 239 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 + V++FHSLEDRLVK+ F ++ V+Q +T K +VPT ++ FN Sbjct: 240 MAVITFHSLEDRLVKQAFRQKN-----------------VWQELTDKPLVPTPAEIRFNP 282 Query: 305 RSRSAKLRAGMRTVE 319 RSRSAKLR R E Sbjct: 283 RSRSAKLRIARRIAE 297 >gi|302868932|ref|YP_003837569.1| S-adenosyl-methyltransferase MraW [Micromonospora aurantiaca ATCC 27029] gi|302571791|gb|ADL47993.1| S-adenosyl-methyltransferase MraW [Micromonospora aurantiaca ATCC 27029] Length = 391 Score = 195 bits (495), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 115/310 (37%), Positives = 179/310 (57%), Gaps = 11/310 (3%) Query: 18 GDHVPVLLEKVIALLNPA---PGKVI-LDATFGAGGYSRSFCKMGSN--VIALDRDPFAV 71 G HVPVLLE+ + LL PA PG+ + +DAT G G++ + + +I LDRD A+ Sbjct: 28 GTHVPVLLERCLELLAPALGRPGRTVHVDATLGLAGHAEAVLSAHPDTVLIGLDRDTEAL 87 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQ 128 + + + + ++ L A + +L + + G +DGV+FDLGVSS+Q+D DRGF++ Sbjct: 88 AHARVRLARFADRIHLEHAVYDELPEVLDRLGYPAIDGVLFDLGVSSLQLDAPDRGFAYA 147 Query: 129 KSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + PLDMRM G++A +VVN + DL R+L + GEEK A +IA AI++ R+ + Sbjct: 148 QDAPLDMRMDQTRGVTAEEVVNTYSHPDLARLLRVYGEEKFAGKIASAIIRERERNRITS 207 Query: 188 TQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 + L+ L++ + ++ HPA R+FQALRI VN E+ L L +A L GG ++ Sbjct: 208 SARLAELVRDAIPAPARRTGGHPAKRTFQALRIEVNRELAALETALPAALDKLTVGGRMV 267 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+S+HSLEDRL K+ A R V + F+ +++ +P + +VA N R+ Sbjct: 268 VLSYHSLEDRLTKQALADRVRSKGPVDLPVELPGSGPTFRLLSRGAELPGEAEVAANPRA 327 Query: 307 RSAKLRAGMR 316 S +LRA R Sbjct: 328 ASVRLRAAER 337 >gi|315504598|ref|YP_004083485.1| s-adenosyl-methyltransferase mraw [Micromonospora sp. L5] gi|315411217|gb|ADU09334.1| S-adenosyl-methyltransferase MraW [Micromonospora sp. L5] Length = 391 Score = 195 bits (495), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 115/310 (37%), Positives = 179/310 (57%), Gaps = 11/310 (3%) Query: 18 GDHVPVLLEKVIALLNPA---PGKVI-LDATFGAGGYSRSFCKMGSN--VIALDRDPFAV 71 G HVPVLLE+ + LL PA PG+ + +DAT G G++ + + +I LDRD A+ Sbjct: 28 GTHVPVLLERCLELLAPALGRPGRTVHVDATLGLAGHAEAVLSAHPDTVLIGLDRDTEAL 87 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQ 128 + + + + ++ L A + +L + + G +DGV+FDLGVSS+Q+D DRGF++ Sbjct: 88 AHARVRLARFADRIHLEHAVYDELPEVLDRLGYPAIDGVLFDLGVSSLQLDAPDRGFAYA 147 Query: 129 KSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + PLDMRM G++A +VVN + DL R+L + GEEK A +IA AI++ R+ + Sbjct: 148 QDAPLDMRMDQTRGVTAEEVVNTYSHPDLARLLRVYGEEKFAGKIASAIIRERERNRITS 207 Query: 188 TQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 + L+ L++ + ++ HPA R+FQALRI VN E+ L L +A L GG ++ Sbjct: 208 SARLAELVRDAIPAPARRTGGHPAKRTFQALRIEVNRELAALETALPAALDKLTVGGRMV 267 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+S+HSLEDRL K+ A R V + F+ +++ +P + +VA N R+ Sbjct: 268 VLSYHSLEDRLTKQALADRVRSKGPVDLPVELPGSGPTFRLLSRGAELPGEAEVAANPRA 327 Query: 307 RSAKLRAGMR 316 S +LRA R Sbjct: 328 ASVRLRAAER 337 >gi|15827426|ref|NP_301689.1| S-adenosyl-methyltransferase MraW [Mycobacterium leprae TN] gi|221229903|ref|YP_002503319.1| S-adenosyl-methyltransferase MraW [Mycobacterium leprae Br4923] gi|13092976|emb|CAC31287.1| conserved hypothetical protein [Mycobacterium leprae] gi|219933010|emb|CAR71001.1| conserved hypothetical protein [Mycobacterium leprae Br4923] Length = 372 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 120/317 (37%), Positives = 174/317 (54%), Gaps = 20/317 (6%) Query: 20 HVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPF 69 HVPV ++ + LL PA +++DAT G GG++ F G +I LDRDP Sbjct: 42 HVPVFAQRCVTLLAPALTRHHADGSNAILVDATLGVGGHAERFLTEFPGLRLIGLDRDPS 101 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQ------DYVPDKGVDGVVFDLGVSSMQIDCGDR 123 A+ + + + ++ +L + L Y + VDGV+FDLGVSSMQ+DC +R Sbjct: 102 ALDIARTRLMRFADRVTLIHTRYDNLAVALNKFGYAAVESVDGVLFDLGVSSMQLDCAER 161 Query: 124 GFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GFS+ + PLDMRM S +SA+D+VN + L IL GEE+ A RIA IV+RR Sbjct: 162 GFSYAQDVPLDMRMDPWSPVSAADIVNNYDEAALADILRRYGEERFARRIAAHIVRRRAH 221 Query: 183 APFQTTQDLSSLIQKTVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 PF +T +L +L+ + + + RI HPA R+FQALRI VN+E+ L+ L +A AL Sbjct: 222 TPFTSTAELVALLYQAIP-APARRIGGHPAKRTFQALRIAVNDELNSLSNVLPAALDALT 280 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300 G L+V+++ SLEDR+VK+ FA I H F+ +T+ ++ Sbjct: 281 VAGRLVVLAYQSLEDRIVKRVFADAVSSRTPAGLPIELPGHGPRFRLLTRGAEHADAAEI 340 Query: 301 AFNRRSRSAKLRAGMRT 317 N RS + +LRA RT Sbjct: 341 ECNPRSAAVRLRALQRT 357 >gi|317132992|ref|YP_004092306.1| S-adenosyl-methyltransferase MraW [Ethanoligenens harbinense YUAN-3] gi|315470971|gb|ADU27575.1| S-adenosyl-methyltransferase MraW [Ethanoligenens harbinense YUAN-3] Length = 312 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 117/299 (39%), Positives = 171/299 (57%), Gaps = 6/299 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77 H VLL + I L P V +D T G GG+S + +IALD DP AV E Sbjct: 6 HQSVLLHESIEALAIRPDGVYVDGTAGGGGHSAAIAAGLESGRLIALDADPDAVRAAGER 65 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + + + + Q+ F ++ + D G VDG++ DLGVSS Q D RGFS++ PLD Sbjct: 66 LAPFGSKACVVQSNFRDMKRVLADLGIAEVDGILLDLGVSSHQFDTPARGFSYRADAPLD 125 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRMS SG+ A +++ A+ +L RIL GEE+ A RIA AI KRR++ P +TT +LS L Sbjct: 126 MRMSQSGLGARELLATASYAELVRILREYGEERFAPRIAAAICKRRETKPLETTFELSEL 185 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 +++ HPA ++FQALR+ VN E+E L+ L A L+ GG L +++FHSLE Sbjct: 186 VREAYPAPARRSGHPARKTFQALRMAVNGELESLSVLLDDALALLRPGGRLCIITFHSLE 245 Query: 255 DRLVK-KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 DR+VK +F + G + + + + K+ V+P+ E++ N+RSRSA+LR Sbjct: 246 DRMVKQRFLSWAQGCICPPDFPVCVCGRKPQVRVVYKRGVLPSAEEIEANQRSRSARLR 304 >gi|303246299|ref|ZP_07332579.1| S-adenosyl-methyltransferase MraW [Desulfovibrio fructosovorans JJ] gi|302492362|gb|EFL52234.1| S-adenosyl-methyltransferase MraW [Desulfovibrio fructosovorans JJ] Length = 326 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 123/309 (39%), Positives = 174/309 (56%), Gaps = 13/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H+PVLL++V+ L PG ILDAT G GG+ + + + V+ LDRD A+ Sbjct: 7 HIPVLLKEVVEYLGIRPGMKILDATAGLGGHIKGMLEAAGGQAEVLGLDRDREALEEAGR 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + Y ++ L + +S+ + + G VD + D G+SS+Q+D +RGF F GPL Sbjct: 67 RLAAYGDRVRLVRTRYSRFPAALAEAGWEKVDAALVDAGMSSLQLDDPERGFGFLTDGPL 126 Query: 134 DMRMSCS--GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 DMRM G SA +VN A+ L I+ GE+ QA RIA AIV R+ A TT L Sbjct: 127 DMRMGAEDGGESAEGLVNLASFARLREIIRNYGEDPQAGRIARAIVAAREKAAITTTGRL 186 Query: 192 SSLIQKTVYFSKNN---RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 + ++ Y +K R HPATR+FQALR+ VN+E++EL L + + L GG + V+ Sbjct: 187 AEVV-AAAYPAKWRAMARQHPATRTFQALRMAVNDELKELEAFLAAVPEYLATGGRVAVI 245 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 SFHSLEDRLVK+ F + + R ++ H A +TKK V+ +E+VA N R+R Sbjct: 246 SFHSLEDRLVKRAFRLEATDCLCPREQVVCVCGHKARLAILTKKPVMAGEEEVAANPRAR 305 Query: 308 SAKLRAGMR 316 SAKLR R Sbjct: 306 SAKLRVARR 314 >gi|297623827|ref|YP_003705261.1| S-adenosyl-methyltransferase MraW [Truepera radiovictrix DSM 17093] gi|297165007|gb|ADI14718.1| S-adenosyl-methyltransferase MraW [Truepera radiovictrix DSM 17093] Length = 339 Score = 194 bits (494), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 117/288 (40%), Positives = 170/288 (59%), Gaps = 24/288 (8%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVS-CGQETM 78 H PV+L + +A L P LD TFGAGG++R+ + G NV+ALDRDP ++ + Sbjct: 10 HAPVMLAECLAHLAVKPQAWYLDGTFGAGGHTRALLEAGGNVLALDRDPSVTRFLPEDAL 69 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + +F + F L + GV GV+ DLGVSSMQ+D +RGFSF+ GPLDM Sbjct: 70 ASGRLRF--VEGNFDALDRHAAAAGVGPLAGVLLDLGVSSMQLDEAERGFSFRHPGPLDM 127 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RM +G+ A+D+VN A+ ++L ++ GEE+ + RIA IV+ R AP TT +L+ +I Sbjct: 128 RMGPTGLCAADLVNSASQEELASVIFRYGEERYSRRIARRIVEARAKAPITTTDELAEII 187 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + Y R HPA R+FQALR+ VN+E+ L + L +AE+AL GG L+V+++HSLED Sbjct: 188 AR-AYPPGPRRDHPARRTFQALRVAVNDELGALERALAAAERALAPGGRLVVLTYHSLED 246 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 R+VK+ F S A+ +TKK + + E+VA N Sbjct: 247 RIVKRAFKSS-----------------ALLTPLTKKPLTASPEEVAAN 277 >gi|281356442|ref|ZP_06242934.1| S-adenosyl-methyltransferase MraW [Victivallis vadensis ATCC BAA-548] gi|281317134|gb|EFB01156.1| S-adenosyl-methyltransferase MraW [Victivallis vadensis ATCC BAA-548] Length = 314 Score = 194 bits (494), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 119/312 (38%), Positives = 187/312 (59%), Gaps = 15/312 (4%) Query: 19 DHVPVLLEKVIALLN-PA--PGKVILDATFGAGGYS----RSFCKMGSNVIALDRDPFAV 71 +H+PVL +V+ L P+ P ++I D T G GG+S R + ++ ++ +DRD A+ Sbjct: 6 EHIPVLRREVLKYLTFPSDRPARLI-DGTVGGGGHSALLLRRYPQL--ELLGIDRDENAL 62 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQ 128 + ET+ + +L + +S L + G VDG++ D+GVSS Q+D RGFS++ Sbjct: 63 AKAAETLAFAGNRVTLVRGDYSSLAGRAAEHGWEEVDGILLDIGVSSPQLDHAGRGFSWR 122 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 GPLDMRM S ++AS +N+A+ ++L R+L GE ++ R+A AIVK+R++ PF T Sbjct: 123 AEGPLDMRMDQRSELTASRFLNRASEQELERVLREYGEVDKSRRVAAAIVKKRETHPFAT 182 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T DL L + + SK ++ T FQALRI VN+E+ EL + L +AEK LK GG ++V Sbjct: 183 TADLVGLCDEVLGKSKPGKLPAPTLVFQALRIAVNDELGELERALPAAEKLLKKGGRIVV 242 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 +SFHSLEDR+VK +F + + + + + + +T KVV ++++A NRRS Sbjct: 243 ISFHSLEDRIVKNYFRDAAASCICPPGLPVCVCGKQSTLKVLTNKVVTAREDELAENRRS 302 Query: 307 RSAKLRAGMRTV 318 A+LRA + V Sbjct: 303 APARLRAAEKLV 314 >gi|330859314|emb|CBX69661.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia enterocolitica W22703] Length = 320 Score = 194 bits (494), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 123/313 (39%), Positives = 182/313 (58%), Gaps = 19/313 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + LN + +D TFG GG+SR ++G +IA+DRDP A+ + Sbjct: 14 HTSVLLDEAVNGLNIRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDRDPQAIEAAKS 73 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +FS+ FS L YV + ++GV+ DLGVSS Q+D +RGFSF + GP Sbjct: 74 IT---DPRFSIVHGPFSDLAHYVRELDLVGRINGVLLDLGVSSPQLDDPERGFSFMRDGP 130 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + GISA++ + +A+ D+ +L GEE+ A R+A AIV+R + P T++L Sbjct: 131 LDMRMDPTRGISAAEWLMKASADDIAWVLKTFGEERFAKRLAKAIVERNLTQPMTRTKEL 190 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI F + ++ HPATRSFQA+RI++N+E+EE+ + L A + L G L V+SFH Sbjct: 191 ADLIANASPFREKHK-HPATRSFQAIRIYINSELEEIERALDGALEVLAPEGRLSVISFH 249 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306 SLEDR+VK F SR +V A + + +S+ K ++P +VA N R+ Sbjct: 250 SLEDRIVKNFIRHHSRGPQVPAGLPLTEAQLRSMGGRTLKSVGK--MMPPDAEVAENPRA 307 Query: 307 RSAKLRAGMRTVE 319 RS+ LR R E Sbjct: 308 RSSVLRFAERIKE 320 >gi|146305949|ref|YP_001186414.1| S-adenosyl-methyltransferase MraW [Pseudomonas mendocina ymp] gi|262825105|sp|A4XQR6|RSMH_PSEMY RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|145574150|gb|ABP83682.1| S-adenosyl-methyltransferase MraW [Pseudomonas mendocina ymp] Length = 314 Score = 194 bits (494), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 119/306 (38%), Positives = 179/306 (58%), Gaps = 18/306 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H+ VLL++ + L +D TFG GG+SR G ++ D+DP A++ G E Sbjct: 8 HITVLLDEAVEGLAVRADGCYIDGTFGRGGHSRLILHKLGPGGRLLGFDKDPLAIATG-E 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F + Q +F++L D +G V GV+ DLGVSS Q+D +RGFSF GP Sbjct: 67 ALAAEDGRFVVVQRSFAELGDEAVVRGISGQVSGVLLDLGVSSPQLDDPERGFSFLNDGP 126 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ G+SA+D + A ++ R+L GEE+ A R+A A+V+RR+ PF T DL Sbjct: 127 LDMRMNPDVGVSAADWIATAEEDEIARVLKDYGEERFAKRMARAVVQRREQQPFTRTADL 186 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ + + + +PATR+FQ +RI+VNNE+ +L +GL +A +AL+ GG L+V+SFH Sbjct: 187 AKVLTEANPAWEKGK-NPATRAFQGIRIYVNNELGDLERGLDAALEALEVGGRLVVISFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVR-----HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 SLEDR+VK+F R K A + +IP P + + K V ++ N RS Sbjct: 246 SLEDRIVKQFM-KRQAKGEADKLPRDLPIIPKAFEPRL--KLIGKPVYAGDAELKANPRS 302 Query: 307 RSAKLR 312 RSA +R Sbjct: 303 RSAVMR 308 >gi|37527526|ref|NP_930870.1| S-adenosyl-methyltransferase MraW [Photorhabdus luminescens subsp. laumondii TTO1] gi|42559441|sp|Q7N139|RSMH_PHOLL RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|36786961|emb|CAE16035.1| S-adenosyl-methyltransferase MraW [Photorhabdus luminescens subsp. laumondii TTO1] Length = 314 Score = 194 bits (494), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 123/306 (40%), Positives = 177/306 (57%), Gaps = 19/306 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + LN + +D TFG GG+SR ++G+ +IA+DRDP A+ + Sbjct: 8 HTSVLLDEAVNGLNIRENGIYIDGTFGRGGHSRLILSQLGTEGRLIAIDRDPQAIEVAKA 67 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +FS+ FS+L Y G +DGV+ DLGVSS Q+D +RGFSF + GP Sbjct: 68 IT---DPRFSIVHGPFSKLAHYTEKAGLIGKIDGVLLDLGVSSPQLDDPERGFSFMRDGP 124 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G SA++ + A D+ +L GEE+ A RIA AIV Q P T+ L Sbjct: 125 LDMRMDPTRGQSAAEWLMNATADDIAWVLKTFGEERFAKRIARAIVACNQEEPITRTKAL 184 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI + + ++ HPAT+SFQA+RI++N+E+EE+ Q L A + L G L V+SFH Sbjct: 185 ADLIAQASPIKEKHK-HPATKSFQAIRIYINSELEEIEQALEGALQVLAPQGRLSVISFH 243 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHP---AVFQSITKKVVVPTQEDVAFNRRS 306 SLEDR+VK+F SR +V A + +SI K + P++E+VA N R+ Sbjct: 244 SLEDRIVKRFIRQNSRGPQVPAGLPLTEEQLKARGGRSLKSIGK--MKPSEEEVADNPRA 301 Query: 307 RSAKLR 312 RS+ LR Sbjct: 302 RSSVLR 307 >gi|260912995|ref|ZP_05919480.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Pasteurella dagmatis ATCC 43325] gi|260632985|gb|EEX51151.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Pasteurella dagmatis ATCC 43325] Length = 321 Score = 194 bits (494), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 127/311 (40%), Positives = 179/311 (57%), Gaps = 22/311 (7%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQ 75 +H+ VLL + + L + +D TFG GG+SR K+ N +IA+DRDP A++ Sbjct: 11 EHITVLLNEAVDGLALKERGIYIDGTFGRGGHSRLILSKLSDNGRLIAIDRDPRAIA--- 67 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E + +F + +FS + + G +DG++ DLGVSS Q+D +RGFSF K G Sbjct: 68 EANKIQDARFHIEHNSFSAIPEICEKLGLTGKIDGILLDLGVSSPQLDEAERGFSFMKDG 127 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA------P 184 PLDMRM + G+SAS+ + Q + DL +L GEE+ A RIA AIV +SA P Sbjct: 128 PLDMRMDTTQGLSASEWLQQVSESDLAWVLKTFGEERFAKRIASAIVNYNKSAQQNGSGP 187 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 T L+ LI ++V F K+ HPATRSFQA+RIF+N E++EL L+SA L G Sbjct: 188 LTRTLQLAELIAQSVPF-KDKHKHPATRSFQAIRIFINAELDELESVLQSALSVLAPEGR 246 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK---KVVVPTQEDVA 301 L ++SFHSLEDR+VK F +S K ++ +P K K ++P++E+ A Sbjct: 247 LSIISFHSLEDRMVKHFMRKQS-KGESLPKGLPLREDQIKRSQTLKTIGKAIMPSEEEQA 305 Query: 302 FNRRSRSAKLR 312 N RSRSA LR Sbjct: 306 NNPRSRSAVLR 316 >gi|253699149|ref|YP_003020338.1| S-adenosyl-methyltransferase MraW [Geobacter sp. M21] gi|263455964|sp|C6DZJ8|RSMH_GEOSM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|251773999|gb|ACT16580.1| S-adenosyl-methyltransferase MraW [Geobacter sp. M21] Length = 312 Score = 194 bits (494), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 119/302 (39%), Positives = 173/302 (57%), Gaps = 9/302 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H+ VL ++V+ L+P G V +D T G G++ + +I DRD A++ ++ Sbjct: 6 HISVLPDEVLQALSPKSGGVYVDGTLGGAGHAGLILTASAPEGRLIGFDRDEEAIAVARQ 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + + + F+ + + + GVDG+ V DLGVSS Q+D +RGFSF PL Sbjct: 66 RLSVFGGRVRIIHRNFAGIAQALAEIGVDGIDGFVLDLGVSSHQLDRDERGFSFMHDAPL 125 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM SG SA+D+VN +L RI+ GEE+ A R+A IVK R P +TT +L Sbjct: 126 DMRMDRSSGQSAADLVNTLPEAELYRIISEYGEERWAKRVASFIVKARDERPIETTLELV 185 Query: 193 SLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + +K R+HPATR+FQALRI VN E++ L +GL+ LK GG V+SFH Sbjct: 186 DVIKGAIPKAKWEERLHPATRTFQALRIAVNEELKSLEEGLQGLLSLLKQGGRGAVISFH 245 Query: 252 SLEDRLVKKFF-ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK+ F A+ +G I F+ +T+K + + +VA N RSRSAK Sbjct: 246 SLEDRIVKEGFRAAATGCTCPKELPICVCGRVPRFKLVTRKPITAGESEVAANPRSRSAK 305 Query: 311 LR 312 LR Sbjct: 306 LR 307 >gi|268610557|ref|ZP_06144284.1| S-adenosyl-methyltransferase MraW [Ruminococcus flavefaciens FD-1] Length = 313 Score = 194 bits (494), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 122/318 (38%), Positives = 180/318 (56%), Gaps = 22/318 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+PV+L + I L P + +D T G G+S + S +IALDRDP AV+ E Sbjct: 5 HIPVMLTECIEGLAIDPDGIYVDGTAGGAGHSSAIAAKLSEKGRLIALDRDPDAVAVATE 64 Query: 77 TMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + + + +S+++ D + VDG++ DLGVSS Q+D G RGFS+ PL Sbjct: 65 RLSKFSNA-QVIHSNYSEIRSVLDRLEIDSVDGILMDLGVSSFQLDEGSRGFSYHTDAPL 123 Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 DMRMS G SA+D+VN + +L RI+ GEEK + RIA I+K R+ AP +TT L+ Sbjct: 124 DMRMSKVGTSAADIVNTYSEAELARIMFEYGEEKFSRRIASNIIKAREKAPVETTLQLAD 183 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 +I+++V +P ++FQALRI VN+E + L++GL A LK G L V++FHSL Sbjct: 184 IIRESVPQKARRDKNPCKKTFQALRIAVNSEFDHLSKGLEDAFYCLKPQGRLAVITFHSL 243 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF------QSITKKVVVPTQEDVAFNRRSR 307 EDRLVK+ FA+ + P + V + + +K + +E++ N RSR Sbjct: 244 EDRLVKQKFAAWCKGCIC-----PPDFPQCVCGRKPEGRLVNRKPIEAGEEELENNNRSR 298 Query: 308 SAKLRAGMRTVERSIEDD 325 SAKL R +ERS E + Sbjct: 299 SAKL----RIIERSGESN 312 >gi|167854991|ref|ZP_02477765.1| S-adenosyl-methyltransferase MraW [Haemophilus parasuis 29755] gi|167853839|gb|EDS25079.1| S-adenosyl-methyltransferase MraW [Haemophilus parasuis 29755] Length = 312 Score = 194 bits (494), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 123/306 (40%), Positives = 178/306 (58%), Gaps = 18/306 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQE 76 H+ VLL + + L P + +D TFG GG+SR K+G +IA+DRDP A++ Sbjct: 7 HITVLLHEAVDGLAIKPNGIYVDGTFGRGGHSRLILSKLGEQGRLIAIDRDPRAIAEAN- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 T+ D + F + + FS + D + +DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 66 TITDPR--FQIVHSAFSSIPDICDELNLVGKIDGILLDLGVSSPQLDEAERGFSFMRDGP 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP--FQTTQ 189 LDMRM + G+SA + + Q +V DL +L GEE+ A RIA A+V +SA T Sbjct: 124 LDMRMDTTKGLSAMEWLAQVSVDDLAWVLKEFGEERFAKRIAQAVVSYNKSATEKISRTL 183 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I V F K+ HPATRSFQA+RI++N+E++EL + L SA L G L ++S Sbjct: 184 QLVQIIADVVPF-KDKHKHPATRSFQAIRIYINSELDELEKALNSALTVLAPEGRLSIIS 242 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIP---SNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 FHSLEDR+VK+F +S K V +P S + + K ++P++ ++ N RS Sbjct: 243 FHSLEDRMVKQFMRKQS-KGETVPKGLPILESELNKNIPLKTVGKAIMPSEAEIEANPRS 301 Query: 307 RSAKLR 312 RSA LR Sbjct: 302 RSAVLR 307 >gi|254382600|ref|ZP_04997958.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Streptomyces sp. Mg1] gi|194341503|gb|EDX22469.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Streptomyces sp. Mg1] Length = 310 Score = 194 bits (494), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 116/308 (37%), Positives = 179/308 (58%), Gaps = 12/308 (3%) Query: 23 VLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77 ++L++ + LL PA PG V++D T G GG+S + +++I LDRD A+ E Sbjct: 1 MMLQRCLDLLAPALQKPGAVVVDCTLGLGGHSEALLTRFPEAHLIGLDRDKEALRLSGER 60 Query: 78 MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + + + +L A ++ L + + V G++FDLGVSSMQ+D DRGF++ + PLD Sbjct: 61 LAPFGGRVTLVHAIYADLAEVLDGLRIPAVQGILFDLGVSSMQLDEADRGFAYAQDAPLD 120 Query: 135 MRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM +GISA++V+N +L RIL GEEKQA RI A+V+ R+ PF + L Sbjct: 121 MRMDQTTGISAAEVLNTYAPGELVRILRQYGEEKQAKRIVSAVVREREKEPFSNSARLVE 180 Query: 194 LIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 LI+ + +K +PA R+FQALRI VN E+ L + + +A + GG + V+S+HS Sbjct: 181 LIRDALPQAAKRTGGNPAKRTFQALRIEVNGELSGLERAIPAAVDRIAVGGRIAVLSYHS 240 Query: 253 LEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDRLVK+ FA+ + ++P P + +T+ +PT+E++A NRR+ A+ Sbjct: 241 LEDRLVKQVFAAGATSTAPPGLPVVPEKYQPK-LKLLTRGAELPTEEEIAENRRAAPARF 299 Query: 312 RAGMRTVE 319 R R E Sbjct: 300 RGVERIRE 307 >gi|229086483|ref|ZP_04218655.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus Rock3-44] gi|228696800|gb|EEL49613.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus Rock3-44] Length = 332 Score = 194 bits (494), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 117/307 (38%), Positives = 180/307 (58%), Gaps = 11/307 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVS 72 T+ HV VLL++ + L+ PG +D T G GG+S S G +IA D+D A+ Sbjct: 22 TMFKHVTVLLKETVDGLDIKPGGTYVDCTLGGGGHSSYLLSRLTEGGKLIAFDQDEIAIQ 81 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK 129 +E Y +QF ++ F L + + + G VDG++FDLGVSS Q+D +RGFS+ Sbjct: 82 NAKEKFSSYGDQFVTVKSNFRYLSEKLQELGITEVDGILFDLGVSSPQLDTPERGFSYHH 141 Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM + ++A +VVN + + L RI GEEK + +IA I R++ +TT Sbjct: 142 DAPLDMRMDQDASLTAYEVVNNWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKTIETT 201 Query: 189 QDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L LI++ + ++ HPA R FQA+RI VN+E++ + L SA K +K GG + V Sbjct: 202 GELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIKMVKPGGRVSV 261 Query: 248 VSFHSLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 ++FHSLEDR+ K F S + ++ +IP P + + IT+K ++P++E++ N R Sbjct: 262 ITFHSLEDRICKTTFKRNSSTPQLPPGLPIIPDEFKPKL-KLITRKPILPSEEELEENNR 320 Query: 306 SRSAKLR 312 +RSAKLR Sbjct: 321 ARSAKLR 327 >gi|114330281|ref|YP_746503.1| S-adenosyl-methyltransferase MraW [Nitrosomonas eutropha C91] gi|123321952|sp|Q0AJD3|RSMH_NITEC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|114307295|gb|ABI58538.1| S-adenosyl-methyltransferase MraW [Nitrosomonas eutropha C91] Length = 317 Score = 194 bits (494), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 116/304 (38%), Positives = 176/304 (57%), Gaps = 12/304 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76 H+ VLLE+ + LN G + +D T+G GG+SR S +IA D+DP A+S + Sbjct: 2 HISVLLEEAVDALNIQKGGIYVDGTYGRGGHSRLILSRLDKSGQLIAFDKDPAAISEARS 61 Query: 77 TMRD-YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + + ++ S + ++ LQ ++ VDG++ DLGVSS+Q+D RGFSF+ GPLDM Sbjct: 62 ILDERFQAVHSSYAGMYTALQSLGINR-VDGILLDLGVSSIQLDEASRGFSFRHDGPLDM 120 Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM S G +A++ + A+ +L I+ GEE+ A +IA AIV + P TT L+ + Sbjct: 121 RMDSSRGKTAAEWLTMASETELKEIIRTYGEERYAGQIASAIVMEQARQPISTTLRLAEI 180 Query: 195 IQKTVY--FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 + V +++R HPATR+FQA+RI +N E+EEL+ L + L GG L+V+SFHS Sbjct: 181 VAAVVRKRGHRDDRQHPATRTFQAIRIHLNQELEELSMTLPQCVELLNTGGRLVVISFHS 240 Query: 253 LEDRLVKKFFASRSGKVMAVRHMI----PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 LEDR+VK+F ++G R + S H I K + P ++V+ N R+RS Sbjct: 241 LEDRIVKRFMRMQTGTDTLPRRLPIREEESRLHNQQKLRIIGKKIRPGSDEVSANPRARS 300 Query: 309 AKLR 312 A +R Sbjct: 301 AVMR 304 >gi|310823496|ref|YP_003955854.1| s-adenosyl-l-methionine-dependent methyltransferase mraw [Stigmatella aurantiaca DW4/3-1] gi|309396568|gb|ADO74027.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Stigmatella aurantiaca DW4/3-1] Length = 301 Score = 194 bits (494), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 116/299 (38%), Positives = 170/299 (56%), Gaps = 12/299 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H VLL + + LL P GKVILD T G GG++ + G+ VI +DRDP A++ + Sbjct: 5 HQTVLLAEAVQLLQPGVGKVILDGTLGGGGHTEALLARGATVIGVDRDPVALAAATARLG 64 Query: 80 DYKEQFSLFQATFSQL----QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + F F +L D +P VDGV+ DLGVSS Q+D +RGFSF GPLDM Sbjct: 65 GHA-HFQARAGNFGELPRVAADVLP---VDGVLVDLGVSSPQLDVAERGFSFNHDGPLDM 120 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RM G +A++++ Q + ++L RI+ LGEE + IA + +++ P +T + ++ Sbjct: 121 RMGPEGRTAAELIAQEDERELARIIYELGEESFSRPIAREL---KRALPTRTLEAAEAVK 177 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + + RIH AT++FQALR+ VN E+E L L + + LK GG V++FHSLED Sbjct: 178 RAVPRKAWPKRIHVATKTFQALRMAVNGELEALDALLGALPRLLKVGGRAAVIAFHSLED 237 Query: 256 RLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 R VK+ F + G + + + P F +TKK V ++++V N RSRSA LRA Sbjct: 238 RKVKEAFRNLVGACRCPPGLPVCACGGPGDFAPLTKKAVSASEQEVELNPRSRSAHLRA 296 >gi|108804337|ref|YP_644274.1| methyltransferase [Rubrobacter xylanophilus DSM 9941] gi|123069097|sp|Q1AVW6|RSMH_RUBXD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|108765580|gb|ABG04462.1| methyltransferase [Rubrobacter xylanophilus DSM 9941] Length = 312 Score = 194 bits (494), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 122/314 (38%), Positives = 180/314 (57%), Gaps = 19/314 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H PV+LE+ + L P+ G V++DATFG GG+S + G V+ +DRDP A + Sbjct: 6 HRPVMLEEAVRALAPSGGDVVVDATFGGGGHSARVLRELGPGGRVVGIDRDPEARGRAER 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + D + FS Q + ++ + +G D ++FDLG+SS Q+D RGFS+ + GPLD Sbjct: 66 LLGDPR--FSFEQGPYDEVLWRMVGRGERADALLFDLGLSSFQVDDPRRGFSYTREGPLD 123 Query: 135 MRM-SCSGISASDVVNQANVKDLTRILGILGE--EKQASRIAHAIVKRRQSAPFQTTQDL 191 MRM SG SA+D +N A ++ +L G+ QA R+A I++RR P +TT DL Sbjct: 124 MRMDPGSGPSAADFLNAAGEAEIAGVLSEYGDVPRAQARRVAREILRRR---PLRTTADL 180 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++ V ++ +PA R FQA+RI VN+E+ L + L +AE+ L GG L+V+SFH Sbjct: 181 REAVRAAVGWAPRG-GNPAKRVFQAVRIRVNDELGGLRRALEAAERLLVPGGRLVVISFH 239 Query: 252 SLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 S EDRLVK+F A R G+ + A P VF+ V+ P++ +VA N RS A Sbjct: 240 SGEDRLVKRFIAEREGRCTCPPELPVCVCGARP-VFR--RGPVLRPSEREVAENPRSAPA 296 Query: 310 KLRAGMRTVERSIE 323 ++R RT E + E Sbjct: 297 RMRVAFRTAEPARE 310 >gi|108800230|ref|YP_640427.1| S-adenosyl-methyltransferase MraW [Mycobacterium sp. MCS] gi|119869358|ref|YP_939310.1| S-adenosyl-methyltransferase MraW [Mycobacterium sp. KMS] gi|122976793|sp|Q1B6W3|RSMH_MYCSS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262825146|sp|A1UI62|RSMH_MYCSK RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|108770649|gb|ABG09371.1| methyltransferase [Mycobacterium sp. MCS] gi|119695447|gb|ABL92520.1| S-adenosyl-methyltransferase MraW [Mycobacterium sp. KMS] Length = 324 Score = 194 bits (493), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 123/310 (39%), Positives = 182/310 (58%), Gaps = 18/310 (5%) Query: 19 DHVPVLLEKVIALLNPA-----P---GKVILDATFGAGGYSRSFCK--MGSNVIALDRDP 68 +H+PVLL++ + LL PA P G V++DAT GAGG++ F G ++I LDRDP Sbjct: 2 EHIPVLLDRCVELLTPALTRRNPDGRGAVLVDATLGAGGHAHRFLSDLPGLHLIGLDRDP 61 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGF 125 A+ E + + ++ SL + + + D + GV G +FDLGVSSMQ+D +RGF Sbjct: 62 QALQIAGERLAPFGDRVSLVRTRYDGIDDALAQTGVAEVSGFLFDLGVSSMQLDRTERGF 121 Query: 126 SFQKSGPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 S+ PLDMRM S + ++A+DVVN KD+TRIL GEE+ A+RIA IV+RR P Sbjct: 122 SYSADAPLDMRMDSDAPLTAADVVNTFAEKDITRILREFGEERFAARIAKHIVRRR---P 178 Query: 185 FQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 TT +L L+ + ++ HPA R+FQALRI VN+E++ L + +A AL+ GG Sbjct: 179 LNTTGELVELLYDAIPAPARRTGGHPAKRTFQALRIAVNSELDSLRAAVPAALAALETGG 238 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 ++V+++ SLEDR+VK FA+ + + H F ++T+ T E++ N Sbjct: 239 RIVVMAYQSLEDRIVKTEFAAATASRTPPGLPVELPGHEPEFVALTRGAERATPEEIERN 298 Query: 304 RRSRSAKLRA 313 RS +LRA Sbjct: 299 PRSAPVRLRA 308 >gi|206901857|ref|YP_002250979.1| S-adenosyl-methyltransferase MraW [Dictyoglomus thermophilum H-6-12] gi|263447293|sp|B5YEM1|RSMH_DICT6 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|206740960|gb|ACI20018.1| S-adenosyl-methyltransferase MraW [Dictyoglomus thermophilum H-6-12] Length = 297 Score = 194 bits (493), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 113/305 (37%), Positives = 172/305 (56%), Gaps = 27/305 (8%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNV-IALDRDPFAVSCGQE 76 H PV+L++VI LN +PGK+++DAT G GG+S + G + I +DRD + +E Sbjct: 8 HKPVMLKEVIHYLNLSPGKIVVDATLGLGGHSSEILRELRGEGLLIGIDRDEEVLKLARE 67 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK-SGP 132 + F LF T+ LQ+ + + +D ++FDLG SS I+ RGFSF + P Sbjct: 68 RLSKIAGNFVLFNTTYDNLQNILKELNLSFIDAILFDLGFSSFHIEKSGRGFSFMRPEEP 127 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMR S + ++A+D++N + +L+ + GEE + ++A IV+RR+ F DL Sbjct: 128 LDMRYSKDTALTAADILNTFSESELSNLFWEYGEEPLSKKLAKKIVERRKDKKFAYVGDL 187 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I + + R H AT+ FQALRI VN+E+ + L L GG ++V+++H Sbjct: 188 LEVIDEVI---PRRRRHEATKVFQALRIAVNDELNIFKRALEQVPFILSIGGRIVVITYH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+VK FF S S K++ V +KKV+ P+ E++ NRR+RSAKL Sbjct: 245 SLEDRIVKNFFKSYSDKILPV----------------SKKVIKPSIEEIKENRRARSAKL 288 Query: 312 RAGMR 316 R G R Sbjct: 289 RVGER 293 >gi|113460496|ref|YP_718560.1| S-adenosyl-methyltransferase MraW [Haemophilus somnus 129PT] gi|123031127|sp|Q0I1E1|RSMH_HAES1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|112822539|gb|ABI24628.1| S-adenosyl-methyltransferase [Haemophilus somnus 129PT] Length = 319 Score = 194 bits (493), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 127/318 (39%), Positives = 181/318 (56%), Gaps = 28/318 (8%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSR----SFCKMGSNVIALDRDPFAVSCG 74 +H VLL + + L + +D TFG GG+SR K G +IA+DRDP A+ Sbjct: 9 EHFTVLLREAVGGLALKENGIYIDGTFGRGGHSRFILSQLSKKG-QLIAIDRDPQAIQVA 67 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 Q ++D + F + +FS + D G +DG++ DLGVSS Q+D +RGFSF K Sbjct: 68 Q-NIQDSR--FRIVHDSFSAIPDICEKLGLTGKIDGILLDLGVSSPQLDNAERGFSFMKD 124 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA------ 183 GPLDMRM + G+SA++ + + +DL +L GEE+ A RIA AIV +SA Sbjct: 125 GPLDMRMDTTQGLSATEWLRLVSEQDLAWVLKTFGEERFAKRIAQAIVGYNKSAVQSGAE 184 Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 P T L+ LI ++V F K+ HPATRSFQA+RIF+N+E++EL + L A L G Sbjct: 185 PLNRTLQLAELIAQSVPF-KDKYKHPATRSFQAIRIFINSELDELEKVLNGALNVLAPQG 243 Query: 244 LLIVVSFHSLEDRLVKKFFASRSG-----KVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L ++SFHSLEDR+VK F +S K + +R H + + K ++PT++ Sbjct: 244 RLSIISFHSLEDRMVKHFIRKQSKGDDLPKGLPLRE--EQIQHNQKLKPVG-KAIMPTEQ 300 Query: 299 DVAFNRRSRSAKLRAGMR 316 ++A N RSRSA LR R Sbjct: 301 EMAANVRSRSAVLRIAER 318 >gi|311693447|gb|ADP96320.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [marine bacterium HP15] Length = 327 Score = 194 bits (493), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 122/310 (39%), Positives = 178/310 (57%), Gaps = 19/310 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMG--SNVIALDRDPFAVSCGQE 76 H VLL+ + L P +D TFG GG+SR ++G + ++ +D+DP A+ +E Sbjct: 15 HRSVLLDSAVDYLVNDPDGYYVDGTFGRGGHSRLILGRLGPSARLLGIDKDPEAIRAAKE 74 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + +F F +F++L V +G V+GV+ DLGVSS Q+D RGFSF + GPL Sbjct: 75 -LEAQDNRFHSFHGSFAELGAAVVGQGWQTVNGVLLDLGVSSPQLDDASRGFSFMRDGPL 133 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ SA++ + A+ D+ ++ GEEK + RIA +V+RRQ AP +TT+ L+ Sbjct: 134 DMRMNTEQSPSAAEWLATADESDIANVIFRYGEEKFSRRIARLLVERRQEAPVETTRQLA 193 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 L+ + V K HPATR+FQA+RIF+N E+E+L GL+SA L GG L+V+SFHS Sbjct: 194 ELVSEAVP-KKEKHKHPATRTFQAIRIFINRELEDLEVGLQSAVDHLAPGGRLVVISFHS 252 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS-----ITKKVVVPTQEDVAFNRRSR 307 LEDRLVK+F + +A +P Q + K E+V+ N R+R Sbjct: 253 LEDRLVKRFM-----RDLARGPQLPKGVPVTAEQEASDFRLVGKASKAGAEEVSDNVRAR 307 Query: 308 SAKLRAGMRT 317 SA +R RT Sbjct: 308 SAVMRVLERT 317 >gi|238761549|ref|ZP_04622524.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia kristensenii ATCC 33638] gi|238700063|gb|EEP92805.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia kristensenii ATCC 33638] Length = 320 Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 121/311 (38%), Positives = 181/311 (58%), Gaps = 15/311 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + LN + +D TFG GG+SR ++G +IA+DRDP A+ + Sbjct: 14 HTSVLLDEAVNGLNIRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDRDPQAIEAAKS 73 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +FS+ FS L YV + ++GV+ DLGVSS Q+D +RGFSF + GP Sbjct: 74 IT---DPRFSIVHGPFSDLAHYVRELDLVGRINGVLLDLGVSSPQLDDPERGFSFMRDGP 130 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G+SA+D + +A D+ +L GEE+ A R+A AIV+R + P T++L Sbjct: 131 LDMRMDPTRGLSAADWLMKAGADDIAWVLKTFGEERFAKRLAKAIVERNLTQPMTRTKEL 190 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI F + ++ HPATRSFQA+RI++N+E+EE+ + L A + L G L V+SFH Sbjct: 191 ADLIANASPFREKHK-HPATRSFQAIRIYINSELEEIERALDGALEVLAPEGRLSVISFH 249 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSI-TKKVVVPTQEDVAFNRRSRS 308 SLEDR+VK F SR +V A + + +++ + ++P +VA N R+RS Sbjct: 250 SLEDRIVKNFIRHHSRGPQVPAGLPLTEAQLRSMGGRTLKSAGKMMPPDAEVAENPRARS 309 Query: 309 AKLRAGMRTVE 319 + LR R E Sbjct: 310 SVLRFAERIKE 320 >gi|307824823|ref|ZP_07655046.1| S-adenosyl-methyltransferase MraW [Methylobacter tundripaludum SV96] gi|307734181|gb|EFO05035.1| S-adenosyl-methyltransferase MraW [Methylobacter tundripaludum SV96] Length = 308 Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 123/310 (39%), Positives = 180/310 (58%), Gaps = 14/310 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC-- 73 +H+PV+ + + L V LD TFG GG+S+ + ++A DRD A++ Sbjct: 2 EHLPVMFAEALQQLAIKEDGVYLDCTFGRGGHSQGILNLLGPSGRLLAFDRDLDAINSDY 61 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQK 129 Q + D ++F L FS L++ V +G VDG++ DLGVSS Q+D +RGFSF + Sbjct: 62 AQAMLED--KRFKLKHTHFSALENIVVSEGLAGKVDGILMDLGVSSPQLDNPERGFSFLR 119 Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM SG++A + + K L ++L GEE+ A RIA AIV++R +P TT Sbjct: 120 DGPLDMRMDGNSGVTAEQWLAGVDEKALVKVLFEYGEERFARRIARAIVEKRAVSPITTT 179 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 ++L+ LI+ V K HPATRSFQA+RI +N+E++EL L+ + + LK GG L+V+ Sbjct: 180 RELAKLIEDVVP-GKEKHKHPATRSFQAIRIEINSELDELKAVLQQSARILKPGGRLVVI 238 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 SFHSLEDR+VK+F + SG K + I IT K + +++A N R+R Sbjct: 239 SFHSLEDRIVKRFIRAESGAKYNPGKLPIKEIDIAKGILKITGKALKAGAQEIAQNPRAR 298 Query: 308 SAKLRAGMRT 317 SA +R R Sbjct: 299 SAVMRVAERV 308 >gi|238060255|ref|ZP_04604964.1| S-adenosyl-methyltransferase mraW [Micromonospora sp. ATCC 39149] gi|237882066|gb|EEP70894.1| S-adenosyl-methyltransferase mraW [Micromonospora sp. ATCC 39149] Length = 366 Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 115/310 (37%), Positives = 179/310 (57%), Gaps = 11/310 (3%) Query: 18 GDHVPVLLEKVIALLNPAPGK----VILDATFGAGGYSRSFCKMGSN--VIALDRDPFAV 71 G HVPVLLE+ + LL PA + V +DAT G G++ + + + +I LDRD A+ Sbjct: 6 GTHVPVLLERCLELLAPALARGDRTVHVDATLGLAGHAEAVLERHPHTVLIGLDRDTEAL 65 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQ 128 + + + + ++ L A + +L + + G +DGV+FDLGVSS+Q+D DRGF++ Sbjct: 66 AHARVRLARFADRVHLEHAVYDELPEVLGRLGYPAIDGVLFDLGVSSLQLDAPDRGFAYA 125 Query: 129 KSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + PLDMRM G++A +VVN + DL R+L + GEEK A RIA AI++ R+ A + Sbjct: 126 QDAPLDMRMDQTRGVTAEEVVNTYSHPDLARVLRVYGEEKFAPRIASAILRERERARITS 185 Query: 188 TQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 + L+ L+++++ ++ HPA R+FQALRI VN E+ L L +A L GG ++ Sbjct: 186 SARLAELVRESIPAPARRTGGHPAKRTFQALRIEVNRELAALETALPAALDKLTVGGRMV 245 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+S+HSLEDRL K R V + F+ +++ +P + +VA N R+ Sbjct: 246 VLSYHSLEDRLTKAALTDRVRSKGPVDLPVELPGSGPTFRLLSRGAELPGEAEVAANPRA 305 Query: 307 RSAKLRAGMR 316 S +LRA R Sbjct: 306 ASVRLRAAER 315 >gi|308048060|ref|YP_003911626.1| S-adenosyl-methyltransferase MraW [Ferrimonas balearica DSM 9799] gi|307630250|gb|ADN74552.1| S-adenosyl-methyltransferase MraW [Ferrimonas balearica DSM 9799] Length = 315 Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 126/308 (40%), Positives = 179/308 (58%), Gaps = 15/308 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H+ VLL++ + L P + +D TFG GG+SR ++G N +I +DRDP AV+ Q+ Sbjct: 7 HITVLLDEAVNGLQLKPDGIYVDGTFGRGGHSRHILSQLGPNGRLIGIDRDPQAVAVAQQ 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F + FS + +YV G +DGV+ DLGVSS Q+D +RGFSF + GP Sbjct: 67 LAAE-DPRFQIVHGPFSGIAEYVEALGLTGQIDGVLLDLGVSSPQLDDAERGFSFLRDGP 125 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA-PFQTTQD 190 LDMRM S G +A++ + +A D+ +L GEEK A IA IV+ + P T Sbjct: 126 LDMRMDNSRGETAAEWLARAEANDIAWVLKTFGEEKFARPIARKIVEHIAAGEPMDRTSH 185 Query: 191 LSSLIQK-TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ LI+K T ++ HPATRSFQA+RI++N+E+EE+ + L A +ALK GG L V+S Sbjct: 186 LAGLIEKMTPKHKRDQGKHPATRSFQAIRIYINSELEEIEKALMGALEALKPGGRLSVIS 245 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK---KVVVPTQEDVAFNRRS 306 FHSLEDRLVK+F R + V H +P K K + P+ +V N R+ Sbjct: 246 FHSLEDRLVKRFM-RRESQGEPVPHGLPLTEEQMKQTRRLKTVGKALKPSDTEVEDNTRA 304 Query: 307 RSAKLRAG 314 RS+ LR G Sbjct: 305 RSSVLRVG 312 >gi|290989161|ref|XP_002677211.1| predicted protein [Naegleria gruberi] gi|284090817|gb|EFC44467.1| predicted protein [Naegleria gruberi] Length = 300 Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 125/312 (40%), Positives = 171/312 (54%), Gaps = 49/312 (15%) Query: 38 KVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF-----SLFQA 90 K+ +DATFGAGGY+R + G VI +D D + +E + E+F + Sbjct: 16 KLFIDATFGAGGYTREILRAYPGCKVIGIDTDYYNNPTIKENEKLIHEEFGKERLEVHCV 75 Query: 91 TFSQLQDYVPDKGV-----------DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 F +++ V +K V DG+VFDLGVSSMQ+D G RGFSF + GPL Sbjct: 76 NFREIKKVVQEKIVPQLKSDTSNVIDGIVFDLGVSSMQLDQGHRGFSFLREGPL------ 129 Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA-PFQTTQDLSSLIQKT 198 A DVVN + DL ++ GE+ +A RIA AIV R + PF+TT +L++LI+K Sbjct: 130 ----ARDVVNNMSELDLRIMITKFGEDDKAYRIAKAIVDYRNNVKPFETTLELANLIEKI 185 Query: 199 VYFS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG-GLLIVVSFHSLED 255 F K RIHPAT++FQA+RIFVN+E+ L L +++ LK G G L+VVS+HSLED Sbjct: 186 TPFHERKKKRIHPATKTFQAIRIFVNDELSALQNALYASKDILKIGTGRLVVVSYHSLED 245 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 R+ K F F+ ITK ++P +V FN RSRSAKLR Sbjct: 246 RITKDFMKENQDS----------------FKKITKGTIIPDDAEVEFNVRSRSAKLRCAQ 289 Query: 316 RTVERSIEDDSF 327 R VE + D+ + Sbjct: 290 R-VENNRTDEDY 300 >gi|229514038|ref|ZP_04403500.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae TMA 21] gi|229349219|gb|EEO14176.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae TMA 21] Length = 316 Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 123/309 (39%), Positives = 174/309 (56%), Gaps = 20/309 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H+ VLL + I L P + +D TFG GG+SR+ ++G + ++DRDP A++ Q+ Sbjct: 7 HISVLLNESIEGLAIKPDGIYIDGTFGRGGHSRTILAQLGPEGRLYSIDRDPQAIAEAQK 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +F++ FS + +Y VDGV+FDLGVSS Q+D +RGFSF K GP Sbjct: 67 I---DDPRFTIVHGPFSGIAEYAQRYDLVGKVDGVLFDLGVSSPQLDDAERGFSFMKDGP 123 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---PFQTT 188 LDMRM SG+ S + QA++ D+T ++ GE+K A RIA AIV+ R++ P T Sbjct: 124 LDMRMDPTSGMPVSAWLAQADLDDITWVIREFGEDKHARRIAKAIVEYRENELNEPLTRT 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ LI S + HPATR+FQA RI++N+E+EE+ L A L G L V+ Sbjct: 184 SQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALCGASDILAPQGRLSVI 243 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSN-----AHPAVFQSITKKVVVPTQEDVAFN 303 SFHSLEDR+VK+F S + V H IP A + K + P+ ++V N Sbjct: 244 SFHSLEDRMVKRFMRKES-QGPQVPHGIPLTQDQIRALGSAKMKTVGKALKPSDQEVELN 302 Query: 304 RRSRSAKLR 312 RSRS+ LR Sbjct: 303 PRSRSSVLR 311 >gi|28373611|pdb|1M6Y|A Chain A, Crystal Structure Analysis Of Tm0872, A Putative Sam- Dependent Methyltransferase, Complexed With Sah gi|28373612|pdb|1M6Y|B Chain B, Crystal Structure Analysis Of Tm0872, A Putative Sam- Dependent Methyltransferase, Complexed With Sah gi|28373847|pdb|1N2X|A Chain A, Crystal Structure Analysis Of Tm0872, A Putative Sam- Dependent Methyltransferase, Complexed With Sam gi|28373848|pdb|1N2X|B Chain B, Crystal Structure Analysis Of Tm0872, A Putative Sam- Dependent Methyltransferase, Complexed With Sam Length = 301 Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 114/309 (36%), Positives = 182/309 (58%), Gaps = 29/309 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77 H+PV + +VI L P K+ILD T G GG+SR+ + G +I +D D + +E Sbjct: 10 HIPVXVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEK 69 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++++ ++ SLF+ ++ + + G VDG++ DLGVS+ Q+ +RGF+F++ PLD Sbjct: 70 LKEFSDRVSLFKVSYREADFLLKTLGIEKVDGILXDLGVSTYQLKGENRGFTFEREEPLD 129 Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQ-ASRIAHAIVKRRQSAPFQTTQDLS 192 R S ++A V+N+ ++L RI+ GEEK+ A RIA IV+ R P TT DL Sbjct: 130 XRXDLESEVTAQKVLNELPEEELARIIFEYGEEKRFARRIARKIVENR---PLNTTLDLV 186 Query: 193 SLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +++ + Y + + H AT++FQA+RI+VN E+E L + L+ AE L GG ++V+SF Sbjct: 187 KAVREALPSYEIRRRKRHFATKTFQAIRIYVNRELENLKEFLKKAEDLLNPGGRIVVISF 246 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDR+VK+ F R+ K + + +T+K V P++E++ N R+RS + Sbjct: 247 HSLEDRIVKETF--RNSKKLRI---------------LTEKPVRPSEEEIRENPRARSGR 289 Query: 311 LRAGMRTVE 319 LRA R E Sbjct: 290 LRAAERIEE 298 >gi|227544880|ref|ZP_03974929.1| S-adenosyl-methyltransferase [Lactobacillus reuteri CF48-3A] gi|300909900|ref|ZP_07127360.1| S-adenosyl-methyltransferase MraW [Lactobacillus reuteri SD2112] gi|154705578|gb|ABS84215.1| S-adenosyl-methyltransferase MraW [Lactobacillus reuteri] gi|227185154|gb|EEI65225.1| S-adenosyl-methyltransferase [Lactobacillus reuteri CF48-3A] gi|300892548|gb|EFK85908.1| S-adenosyl-methyltransferase MraW [Lactobacillus reuteri SD2112] Length = 318 Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 121/305 (39%), Positives = 183/305 (60%), Gaps = 13/305 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77 HV VLL++ +A LN P +DAT G GG++++ + + ++ + D+D A++ +E Sbjct: 6 HVTVLLKEAVAGLNVQPTGTYVDATLGGGGHTQAILQQLVDGHLYSFDQDQTAINYNKEQ 65 Query: 78 MRDYKEQ--FSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 ++ EQ +L + F L+ D K V+G+++DLGVSS Q D RGFS+Q P Sbjct: 66 LKTAIEQQKLTLIEDNFRNLKAELDSYNVKHVNGILYDLGVSSPQFDDAKRGFSYQHDAP 125 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ +SA +VVN+ + + L +IL GEEK A IA I +RR+ AP +TT +L Sbjct: 126 LDMRMNQEQKLSAMEVVNEWSYERLVKILYRYGEEKFAKSIARKIEQRRKIAPIKTTFEL 185 Query: 192 SSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I++ + ++ + HPA +SFQA+RI VN+E+ L + L A L GG + V++F Sbjct: 186 VDVIKEGIPAAARRHGGHPAKKSFQAIRIAVNDELGALEESLEQALDLLDVGGRISVITF 245 Query: 251 HSLEDRLVKKFF---ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 SLEDRLVK F S SG V +IP+ P F+ I KK +V ++E++A N R+ Sbjct: 246 QSLEDRLVKTMFREKTSLSGDVPQGLPVIPAGMEPN-FKLINKKPIVASEEELAANHRAH 304 Query: 308 SAKLR 312 SAKLR Sbjct: 305 SAKLR 309 >gi|50955157|ref|YP_062445.1| S-adenosyl-methyltransferase [Leifsonia xyli subsp. xyli str. CTCB07] gi|54036175|sp|Q6AE56|RSMH_LEIXX RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|50951639|gb|AAT89340.1| S-adenosyl-methyltransferase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 325 Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 125/325 (38%), Positives = 177/325 (54%), Gaps = 13/325 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIA 63 MS IH I H+PVLLE+ I LL PA PG VI+DAT G GG+S + ++ Sbjct: 1 MSDDIHGDI--HLPVLLERCIELLAPALQEPGAVIVDATLGMGGHSAGILARFPQATLVG 58 Query: 64 LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDC 120 LDRDP A++ E + + ++ L + +++ + G V GV+FDLGVSS+Q+D Sbjct: 59 LDRDPDALAIAGERLARFGDRVHLVHTVYDGIREALDGLGIAEVQGVLFDLGVSSLQLDR 118 Query: 121 GDRGFSFQKSGPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS+ K PLDMRM S ++A V+ + DL RI GEEK A+R A IV Sbjct: 119 VERGFSYSKDAPLDMRMDGTSDLTAERVLAEYPEADLRRIFRDYGEEKLAARYAQRIVAA 178 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 RQ P + +L L+Q+ + + HPA R FQALRI VN E+ L + L +A AL Sbjct: 179 RQQGPITRSGELVHLLQRATPAAIARQGHPAKRVFQALRIEVNQELAVLERALPAAVDAL 238 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 GG L+V S+ SLEDR+VK+ +RS + H + + + + ++ Sbjct: 239 AVGGRLVVESYQSLEDRIVKRELQTRSRSSAPAGLPVELPEHRPELRLLIRGAELADDDE 298 Query: 300 VAFNRRSRSAKLRAGMRTVERSIED 324 A N R+ +LRA RT R+ ED Sbjct: 299 KAANPRAAPVRLRAAERT--RASED 321 >gi|229588482|ref|YP_002870601.1| S-adenosyl-methyltransferase MraW [Pseudomonas fluorescens SBW25] gi|262825100|sp|C3KCS2|RSMH_PSEFS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|229360348|emb|CAY47205.1| S-adenosyl-methyltransferase [Pseudomonas fluorescens SBW25] Length = 315 Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 120/308 (38%), Positives = 183/308 (59%), Gaps = 20/308 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQ 75 +H+ VLL++ + L LD TFG GG+SR ++GS+ ++ D+DP A++ GQ Sbjct: 8 NHITVLLDEAVEALAVRADGCYLDGTFGRGGHSRLILSQLGSDGKLLGFDKDPQAIATGQ 67 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +F + Q +F++L V ++G V GV+ DLGVSS Q+D +RGFSF G Sbjct: 68 -ALAAEDGRFVVVQRSFAELGAEVAERGMAGKVAGVLLDLGVSSPQLDDPERGFSFMNDG 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + G+SA+ + A V+++ R+ GEE+ A R+A A+V+RR+ PF+ T D Sbjct: 127 PLDMRMDPTRGVSAAQFIATAPVEEIARVFKEYGEERFAGRMARAVVERREIQPFERTAD 186 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ ++ K + +PATR+FQ LRI VNNE+ +L GL +A +AL+ GG L+V+SF Sbjct: 187 LAEVL-KVANPAWEKGKNPATRAFQGLRIHVNNELGDLEAGLEAALEALEVGGRLVVISF 245 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVV------PTQEDVAFNR 304 HSLEDR+VK F V +P N P F++ K+ + ++ ++ N Sbjct: 246 HSLEDRIVKLFMRR---LVKGESDNLPRNL-PVRFEAFVPKIKIHGKAQFASEAELKANP 301 Query: 305 RSRSAKLR 312 RSRSA +R Sbjct: 302 RSRSAVMR 309 >gi|159900036|ref|YP_001546283.1| S-adenosyl-methyltransferase MraW [Herpetosiphon aurantiacus ATCC 23779] gi|263456121|sp|A9B518|RSMH_HERA2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|159893075|gb|ABX06155.1| S-adenosyl-methyltransferase MraW [Herpetosiphon aurantiacus ATCC 23779] Length = 337 Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 116/333 (34%), Positives = 187/333 (56%), Gaps = 32/333 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN----VIALDRDPFAVSCGQ 75 H+PVL + +A LN P +D T G G+S + GS ++A+D+DP A++ + Sbjct: 5 HIPVLYDAALAALNLRPDGRYIDGTLGWAGHSSGILE-GSGPTGRLLAIDQDPMALAAAR 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + Y E+ ++ + Q+ G VDG++ D+GVSS Q+D +RGFSFQ P Sbjct: 64 ERLAPYGERATIVHGNYRQMASLAAQHGWQQVDGILLDIGVSSPQLDLPERGFSFQYDAP 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ + G SA+D++ Q + L ++ GEE+ + RIA IV++R +P +T L Sbjct: 124 LDMRMNPTRGESAADLIAQLDETSLANLIYEYGEERLSRRIARRIVEQRSKSPITSTAQL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +SL+ K+ + + HPATR+FQALRI VN+E+ L +GL +A L GG L V++FH Sbjct: 184 ASLV-KSAVGGQAGKTHPATRTFQALRIAVNDELGALREGLAAATNLLAPGGRLAVITFH 242 Query: 252 SLEDRLVKKFFASRSG--------KVMAVRHMIPSNAHP--------------AVFQSIT 289 SLEDR+VK++ ++ +++A H +N P + ++ Sbjct: 243 SLEDRIVKEWMRDQASECLIPAKLEILACPHNCAANTGPRSCIYPVGRDCDYVPTLEVLS 302 Query: 290 KKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSI 322 +K + T E++ N R+RSAKLR R + +++ Sbjct: 303 RKPIEATPEELKANPRARSAKLRVAERRLTKTL 335 >gi|325067114|ref|ZP_08125787.1| S-adenosyl-methyltransferase MraW [Actinomyces oris K20] Length = 319 Score = 194 bits (492), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 112/271 (41%), Positives = 169/271 (62%), Gaps = 24/271 (8%) Query: 17 IGDHVPVLLEKVIALLNPA------------PGK-VILDATFGAGGYSRSFCKMGSN--V 61 +G H PVLLE+ + LL PA P + V++D T G GG++ + + + V Sbjct: 14 VGRHEPVLLERCLDLLAPAIEGAVSSTSTTAPARPVMIDCTLGMGGHTEAALERFTTLKV 73 Query: 62 IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL-----QDYVPDKG-VDGVVFDLGVSS 115 + +DRDP A++ + + ++F QAT+ + + V +G VD V+ DLGVSS Sbjct: 74 VGIDRDPEAIALASARLARFGDRFIAVQATYDAVGRVAREHSVRAEGTVDAVLMDLGVSS 133 Query: 116 MQIDCGDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAH 174 +Q+D RGFS+ ++ PLDMRM SG++A D++ A+ +LTRIL GEE+ ASRIA Sbjct: 134 LQLDEASRGFSYARTAPLDMRMDQSSGMTAQDLLESADAAELTRILRTYGEERFASRIAA 193 Query: 175 AIVKRRQSA-PFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGL 232 AIV+RR+S P +TQDL+ L++++V ++ N HPA R+FQALRI VN E++ L + + Sbjct: 194 AIVRRRESGQPVTSTQDLAELVRQSVPAAARRNGGHPAKRTFQALRIAVNAELDVLERAV 253 Query: 233 RSAEKALKAGGLLIVVSFHSLEDRLVKKFFA 263 A +L+ GG L+V S+ SLEDR+VK+ A Sbjct: 254 PRALNSLRVGGRLVVESYQSLEDRIVKRALA 284 >gi|257056486|ref|YP_003134318.1| S-adenosyl-methyltransferase MraW [Saccharomonospora viridis DSM 43017] gi|256586358|gb|ACU97491.1| S-adenosyl-methyltransferase MraW [Saccharomonospora viridis DSM 43017] Length = 327 Score = 194 bits (492), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 119/320 (37%), Positives = 185/320 (57%), Gaps = 22/320 (6%) Query: 20 HVPVLLEKVIALLNPAPGK---VILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCG 74 H+PVL+++V+ L PA +++D T G GG++ + VI LDRDP A+ Sbjct: 16 HLPVLVDRVLELFEPAVSDRDAILVDTTLGLGGHTEALLSAYPRLRVIGLDRDPEALERS 75 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + Y + + +++D + + V+GV+ DLGVSSMQ+D DRGF++ ++ Sbjct: 76 RRRLARYGSRVQFVHTVYDRIRDVLAELDVPAVEGVLMDLGVSSMQLDRDDRGFAYARNA 135 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM +GI+A+DV+N +V +LTR+L GEE+ A RIA A+V R+ PF T++ Sbjct: 136 PLDMRMDPTTGITAADVLNTYSVDELTRVLRDYGEERFARRIAKAVVAERKREPFDTSER 195 Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L L+ TV S+ HPA R+FQALRI VN E++ L + +A +L GG ++V S Sbjct: 196 LVRLLYATVPAGSRRTGGHPAKRTFQALRIEVNGELDILRAAVPAAIDSLAVGGRIVVES 255 Query: 250 FHSLEDRLVKKFF----ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 +HSLEDR+VK+ SR+ + + V +P H + +T+ +E++ N R Sbjct: 256 YHSLEDRIVKQALTRAATSRTPEGLPVE--LP--GHGPKLRLLTRGAEKADEEEIRRNPR 311 Query: 306 SRSAKLRAGMRTVERSIEDD 325 + S +LRA E+ EDD Sbjct: 312 AASVRLRAA----EKRGEDD 327 >gi|242018707|ref|XP_002429815.1| S-adenosyl-methyltransferase mraW, putative [Pediculus humanus corporis] gi|212514833|gb|EEB17077.1| S-adenosyl-methyltransferase mraW, putative [Pediculus humanus corporis] Length = 382 Score = 194 bits (492), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 121/331 (36%), Positives = 170/331 (51%), Gaps = 33/331 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H PV+L +VI L+ G + LD TFG+GG+S + ++ALDRDP A Sbjct: 50 HEPVMLNEVIKNLDLKKGNLFLDMTFGSGGHSLELLNRVPDLKILALDRDPIAYEYALNA 109 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + FS L + D + DG++ DLG SSMQ D +RGFS GP Sbjct: 110 KEKHPDNIYPLLGKFSDLPKLLNDNNIKANTIDGILLDLGCSSMQFDTPERGFSINNDGP 169 Query: 133 LDMRMSCSGI----SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQT 187 LDMRM C I +A DV+ A +L I GEEK++ +IA AI + R + P +T Sbjct: 170 LDMRMDCDRIKGSLTAGDVIAHATEMELYNIFKKYGEEKRSRKIARAITQMRNTFKPIKT 229 Query: 188 TQDLSSLIQKTV----YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 T+DL+ LI + Y N + T+ FQALRIFVNNE+ EL + A LK G Sbjct: 230 TKDLNDLISVVLTDVRYDKLNRKTGTGTKIFQALRIFVNNELNELNYAMTLAHHYLKVGS 289 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA---------------HPAVFQSI 288 +V++FHSLED +VK+ F ++ + +P N + + + Sbjct: 290 RAVVLTFHSLEDVIVKRHFKNQHQ--LNYVQNLPLNMINSLKTYDECEFNSFNKQYWIPV 347 Query: 289 TKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319 KKV++P +V N RSRSAKLRA ++T E Sbjct: 348 NKKVLIPDSFEVCNNPRSRSAKLRAAIKTQE 378 >gi|85058419|ref|YP_454121.1| S-adenosyl-methyltransferase MraW [Sodalis glossinidius str. 'morsitans'] gi|123520087|sp|Q2NVV9|RSMH_SODGM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|84778939|dbj|BAE73716.1| conserved hypothetical protein [Sodalis glossinidius str. 'morsitans'] Length = 315 Score = 194 bits (492), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 123/306 (40%), Positives = 180/306 (58%), Gaps = 17/306 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + LN P V LD TFG GG+SR K+G+ + A+DRDP A+ + Sbjct: 7 HTTVLLDEAVKGLNLRPDSVYLDGTFGRGGHSRLILSKLGAQGRLFAIDRDPAAIEAARA 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +F++ FS + +Y+ + VDG++ DLGVSS Q+D +RGFSF + GP Sbjct: 67 IE---DARFAIIHGPFSAMAEYMAQRDLLGKVDGILLDLGVSSPQLDDPERGFSFMRDGP 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G SA+ + QA+ +D+ +L GEE+ A RIA AIV + P T++L Sbjct: 124 LDMRMDTTRGQSAAQWLAQASAEDIAWVLKTFGEERFAKRIAQAIVAHNRQQPMTRTREL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++LI F ++ HPATRSFQA+RI++N+E+EE+ + L A L GG L V+SFH Sbjct: 184 AALIADASPFRDKHK-HPATRSFQAIRIYINSELEEIERALDGALTVLAPGGRLSVISFH 242 Query: 252 SLEDRLVKKFFA--SRSGKVMAVRHMIPSN-AHPAVFQSITKKV--VVPTQEDVAFNRRS 306 SLEDRLVK+F SR +V A + + A Q + K + P+ +++ N R+ Sbjct: 243 SLEDRLVKQFIRQHSRGPQVPAGLPLTEAQIAAQYQDQRLLKAAGKMQPSAREISDNPRA 302 Query: 307 RSAKLR 312 RS+ LR Sbjct: 303 RSSVLR 308 >gi|308173479|ref|YP_003920184.1| S-adenosyl-dependent methyltransferase [Bacillus amyloliquefaciens DSM 7] gi|307606343|emb|CBI42714.1| S-adenosyl-dependent methyltransferase active on membrane-located substrates [Bacillus amyloliquefaciens DSM 7] gi|328553591|gb|AEB24083.1| 16S rRNA m(4)C1402 methyltranserfase [Bacillus amyloliquefaciens TA208] gi|328911615|gb|AEB63211.1| S-adenosyl-dependent methyltransferase active on membrane-located substrates [Bacillus amyloliquefaciens LL3] Length = 311 Score = 194 bits (492), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 116/303 (38%), Positives = 177/303 (58%), Gaps = 11/303 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H VLL + + LN P +D T G G+S + S +IA D+D A+ ++ Sbjct: 4 HKTVLLRETVDGLNIKPDGTYVDCTLGGAGHSTYLLQQLSEKGRLIAFDQDDTALENAKQ 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 T+ +YK Q L ++ F L++ + + G VDG++FDLGVSS Q+D +RGFS+ PL Sbjct: 64 TLSEYKGQLILVKSNFRYLKECLHEHGITSVDGILFDLGVSSPQLDTPERGFSYHHDAPL 123 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S ++A +VVN+ +DL RI GEEK + +IA I + R+ +P QTT L Sbjct: 124 DMRMDQSAALTAKEVVNEWRYEDLVRIFFKYGEEKFSKQIARKIEEAREKSPIQTTGQLV 183 Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 LI+ + ++ + HPA R FQA+RI VN+E++ + L A + LK GG + V++FH Sbjct: 184 DLIKDAIPAPARRSGGHPAKRVFQAIRIAVNDELQVFEEALLQAIEVLKPGGRVSVITFH 243 Query: 252 SLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+ K F +S ++ +IP P + + IT+K + ++E++ N R+RSA Sbjct: 244 SLEDRMCKTTFKEKSSLPELPPGLPVIPEEFEPEL-KLITRKPITASKEELEENNRARSA 302 Query: 310 KLR 312 KLR Sbjct: 303 KLR 305 >gi|83589686|ref|YP_429695.1| methyltransferase [Moorella thermoacetica ATCC 39073] gi|123524773|sp|Q2RK87|RSMH_MOOTA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|83572600|gb|ABC19152.1| methyltransferase [Moorella thermoacetica ATCC 39073] Length = 318 Score = 194 bits (492), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 125/309 (40%), Positives = 185/309 (59%), Gaps = 9/309 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQE 76 H PVLL +V+ LL+P PG+ +DAT G GG+SR+ G +++ LDRD AV+ +E Sbjct: 5 HQPVLLTEVLHLLDPQPGEFFVDATVGGGGHSRAILPRLLPGGHLLGLDRDAEAVAAARE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + + QA F L + +G VDG++FDLGVSS Q+D +RGFS+Q PL Sbjct: 65 RLAAFGANVEIVQANFRDLAAILEARGIPGVDGLLFDLGVSSYQLDNPERGFSYQVDAPL 124 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM ++A++VVN + LTR++ GEE+ A RIA IV R+ P TT L Sbjct: 125 DMRMGQDQELTAAEVVNNWPEEKLTRVIWQYGEERWAPRIAAFIVASRRQRPITTTGQLV 184 Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++I++ + ++ + HPA R+FQALRI +N E++ L L + LK GG + V+SFH Sbjct: 185 AIIKEAIPAGARRSGHHPAKRTFQALRIAINGELDALRAALEQLDSILKPGGRVGVISFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK+ F S SG+ + + + V +T+K V+PT ++ N R+RSAK Sbjct: 245 SLEDRIVKEAFRSLSGRCTCPPGLPVCTCGRREVLVPVTRKPVIPTAAEIVANPRARSAK 304 Query: 311 LRAGMRTVE 319 LR R ++ Sbjct: 305 LRVARRVLK 313 >gi|283458388|ref|YP_003363012.1| putative S-adenosylmethionine-dependent methyltransferase [Rothia mucilaginosa DY-18] gi|283134427|dbj|BAI65192.1| predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Rothia mucilaginosa DY-18] Length = 354 Score = 194 bits (492), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 116/309 (37%), Positives = 175/309 (56%), Gaps = 15/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVI--------LDATFGAGGYSRSFCKMGSNV--IALDRDPF 69 HVPV+L++ I LL P + + +D T G GG+S + + N+ I +DRD Sbjct: 37 HVPVMLDRCINLLAPGIERAVEERGTAYVIDGTLGMGGHSEALLERFENLVLIGIDRDLQ 96 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFS 126 A + E + + E+F A + ++ + +G+DG++ DLGVSSMQ+D RGF+ Sbjct: 97 AHAIAGERLARFGERFVPVHAVYDEIDRAMETAGVQGIDGILMDLGVSSMQLDERTRGFA 156 Query: 127 FQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 + PLDMRM+ ++A VVN+ + L RI+ GEEK ASRIA AI R +AP Sbjct: 157 YSYDAPLDMRMNSEDELTARIVVNEYSEDQLRRIIRNWGEEKFASRIARAICTARANAPL 216 Query: 186 QTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 +TT +L +IQK V ++ HPA R+FQALRI VN+E+E L + + +A +AL GG Sbjct: 217 ETTGELVRIIQKAVPVAAQRTGGHPAKRTFQALRIEVNHELEALERAVPAALEALNLGGR 276 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 + +S+HSLED++VK+ + + + H + IT+ PT E++ N Sbjct: 277 FVAMSYHSLEDKIVKRALTAEATSKAPKGFPVELEEHKPTVKIITRGAEPPTDEEIEQNS 336 Query: 305 RSRSAKLRA 313 R+ SAKLRA Sbjct: 337 RAASAKLRA 345 >gi|257068256|ref|YP_003154511.1| S-adenosyl-methyltransferase MraW [Brachybacterium faecium DSM 4810] gi|256559074|gb|ACU84921.1| S-adenosyl-methyltransferase MraW [Brachybacterium faecium DSM 4810] Length = 331 Score = 194 bits (492), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 118/311 (37%), Positives = 176/311 (56%), Gaps = 13/311 (4%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74 HVPVLL+ + LL PA G V +DAT G GG++ + ++++ +DRDP A++ Sbjct: 14 HVPVLLDTSVQLLAPALQDAGAVHVDATLGMGGHAAAVLHAAPRAHLVGIDRDPQALALA 73 Query: 75 QETM--RDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 +E + E+ +L AT+ Q+ + + D G GV+ DLG+SS QID DRGFS+ Sbjct: 74 RERLDREGVGERATLVHATYDQIPEVLEDLGLPGAHGVMMDLGLSSFQIDTADRGFSYAV 133 Query: 130 SGPLDMRMSCS--GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 PLDMRM S G +A+D++ ++ RIL LG+E+ A RIA +V++R+SAP Sbjct: 134 DAPLDMRMDTSSDGPTAADLLRDLPEAEIARILRDLGDERFAKRIARRVVQQRESAPLTR 193 Query: 188 TQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 + +L +L+++ + SK + HPA R+FQALRI VN E+E LA L SA + GG ++ Sbjct: 194 SGELVALLERAIPAASKASGGHPAKRTFQALRIAVNEELEILASALESALDCVHVGGRIV 253 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V S+HS EDRLVK F R + H F + + + + + N R+ Sbjct: 254 VESYHSGEDRLVKTAFTRRIRSSAPPGLPVELEEHKPTFSPLVRGALQADEHERGSNSRA 313 Query: 307 RSAKLRAGMRT 317 S +LRA RT Sbjct: 314 ASVRLRALTRT 324 >gi|310659206|ref|YP_003936927.1| s-adenosyl-dependent methyltransferase activity on membrane-located substrates [Clostridium sticklandii DSM 519] gi|308825984|emb|CBH22022.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Clostridium sticklandii] Length = 310 Score = 194 bits (492), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 113/310 (36%), Positives = 176/310 (56%), Gaps = 18/310 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77 HV VLL + + +L+ P + +D T G G+S K +I D+D A+S +E Sbjct: 5 HVTVLLNEAVDILDIKPDGIYVDGTLGGAGHSLEIVKKLTSGKLICFDQDINAISAAKEK 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++D+ ++ L + F L++ + G+ DG + DLGVSS Q+D +RGFS+ + PLD Sbjct: 65 LKDFMDKTILVHSNFENLREELNKLGIETIDGFLVDLGVSSHQLDVPERGFSYMQDAPLD 124 Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM + +SA DVVN + +L R++ GEE ++RIA IV+RR + P +TT +L Sbjct: 125 MRMDNNAELSAYDVVNTYSEAELKRVIKDYGEENWSARIAKIIVERRTTMPIRTTFELVD 184 Query: 194 LIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 I+ + ++ HPA R+FQA+RI VN E++ + + L +A + GG+L V++FHS Sbjct: 185 AIKAAIPKKMRDENQHPAKRTFQAIRIEVNRELDVIEKTLLAAVDMMNEGGVLAVITFHS 244 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSN------AHPAVFQSITKKVVVPTQEDVAFNRRS 306 LEDR+VK F K + P V + IT+K ++P++ +V N RS Sbjct: 245 LEDRIVKNVF-----KKLQYSCTCPPEFPVCICNSKQVVEIITRKPILPSENEVEMNPRS 299 Query: 307 RSAKLRAGMR 316 RSAKLRA + Sbjct: 300 RSAKLRAARK 309 >gi|238927330|ref|ZP_04659090.1| S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Selenomonas flueggei ATCC 43531] gi|238884612|gb|EEQ48250.1| S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Selenomonas flueggei ATCC 43531] Length = 312 Score = 194 bits (492), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 124/303 (40%), Positives = 166/303 (54%), Gaps = 12/303 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 HV VLLE+ + LN P + +DAT G G++R S +I +D+D A++ E Sbjct: 6 HVSVLLEETVGALNVMPDGIYVDATLGGAGHARRIAAHLSEHGRLIGIDQDETAIAAAHE 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + D + Q SL + F L + +GV DGV+FDLGVSS QID +RGFS+ + PL Sbjct: 66 RLADVRCQVSLVRDNFRNLSAILAAEGVFSVDGVLFDLGVSSPQIDTPERGFSYMQDAPL 125 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM +SA DVVN + LT I GEE+ A RIA I K RQ+ P TT DL Sbjct: 126 DMRMDQRARLSAYDVVNAYTAEQLTEIFYTYGEERWAKRIAAFIEKERQAHPIATTGDLV 185 Query: 193 SLIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++I + V R HPA R FQA+RI VN+E+ L L +A AL+ GG L V++FH Sbjct: 186 AVIDRAVPKEVRARGGHPAKRVFQAIRIEVNDELGILEGALSAAVNALRIGGRLAVITFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK + + H + P V + K +E+ A N R+RSA Sbjct: 246 SLEDRIVKNTLRRLAQGCICPPHTPVCVCGHTPEV--RLVGKAKAAGKEECAANTRARSA 303 Query: 310 KLR 312 KLR Sbjct: 304 KLR 306 >gi|260773502|ref|ZP_05882418.1| S-adenosyl-methyltransferase MraW [Vibrio metschnikovii CIP 69.14] gi|260612641|gb|EEX37844.1| S-adenosyl-methyltransferase MraW [Vibrio metschnikovii CIP 69.14] Length = 316 Score = 194 bits (492), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 125/310 (40%), Positives = 175/310 (56%), Gaps = 22/310 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 HV VLL + I L P + +D TFG GG+SR+ ++G + ++DRDP A++ E Sbjct: 7 HVSVLLHESIDGLAIKPDGIYIDGTFGRGGHSRTILAQLGPEGRLYSIDRDPQAIA---E 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F++ FS + +Y VDGV+FDLGVSS Q+D +RGFSF K GP Sbjct: 64 ASKIDDPRFTIIHGPFSGIAEYAQRYNLQGQVDGVLFDLGVSSPQLDDAERGFSFMKDGP 123 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---PFQTT 188 LDMRM SG+S + + A + D+T ++ GE+K A RIA AIV R + P T Sbjct: 124 LDMRMDPNSGVSVAQWLLTAELDDITWVIREFGEDKHARRIAKAIVAHRDNPDNEPLTRT 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ LI + S + HPATR+FQA RI++N+E+EE+ L+ A L G L V+ Sbjct: 184 SQLAKLISEAAPKSFKEKKHPATRTFQAFRIYINSELEEIDIALQGAASILAPQGRLSVI 243 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH------PAVFQSITKKVVVPTQEDVAF 302 SFHSLEDR+VK+F S K V H +P A ++I K + P+ +VA Sbjct: 244 SFHSLEDRMVKRFIRKES-KGPDVPHGLPLTQDQIKALGSAKLKAIG-KAIKPSDHEVAL 301 Query: 303 NRRSRSAKLR 312 N RSRS+ LR Sbjct: 302 NPRSRSSVLR 311 >gi|70732392|ref|YP_262148.1| S-adenosyl-methyltransferase MraW [Pseudomonas fluorescens Pf-5] gi|88909211|sp|Q4K6I5|RSMH_PSEF5 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|68346691|gb|AAY94297.1| S-adenosyl-methyltransferase MraW [Pseudomonas fluorescens Pf-5] Length = 315 Score = 194 bits (492), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 119/308 (38%), Positives = 182/308 (59%), Gaps = 20/308 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMG--SNVIALDRDPFAVSCGQ 75 +H+ VLL++ + L P LD TFG GG+SR K+G ++ D+DP A++ GQ Sbjct: 8 NHITVLLDEAVEALAVRPDGCYLDGTFGRGGHSRLILSKLGPQGRLLGFDKDPQAIATGQ 67 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +F + Q +F++L V ++G V GV+ DLGVSS Q+D +RGFSF G Sbjct: 68 -ALAAEDGRFVVVQRSFAELGSEVAERGLAGKVSGVLLDLGVSSPQLDDPERGFSFLNDG 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + GISA+ + A V+++ R+ GEE+ + R+A A+V+RR+ PF+ T D Sbjct: 127 PLDMRMDPTRGISAAQFIATAPVEEIARVFKEYGEERFSGRMARAVVERREIQPFERTAD 186 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ ++ K + +PATR+FQ LRI VNNE+ +L GL +A ++L+ GG L+V+SF Sbjct: 187 LAEVL-KVANPAWEKGKNPATRAFQGLRIHVNNELGDLEAGLEAALESLEVGGRLVVISF 245 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVV------PTQEDVAFNR 304 HSLEDR+VK F V +P N P F++ K+ + ++ ++ N Sbjct: 246 HSLEDRIVKLFMRR---LVKGESDNLPRNL-PVRFEAFVPKIKIHGKAQFASEAELKANP 301 Query: 305 RSRSAKLR 312 R+RSA +R Sbjct: 302 RARSAVMR 309 >gi|332531941|ref|ZP_08407825.1| S-adenosyl-methyltransferase MraW [Pseudoalteromonas haloplanktis ANT/505] gi|332038568|gb|EGI75011.1| S-adenosyl-methyltransferase MraW [Pseudoalteromonas haloplanktis ANT/505] Length = 285 Score = 194 bits (492), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 115/288 (39%), Positives = 175/288 (60%), Gaps = 17/288 (5%) Query: 41 LDATFGAGGYS-RSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD 97 +D TFG GG+S + ++G + A+D+DP A+ ++ D + F++ FS L + Sbjct: 1 MDGTFGRGGHSGQILARLGDEGRLQAIDQDPQAIQSAEKFADDPR--FAIAHTRFSNLYE 58 Query: 98 YVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS-CSGISASDVVNQAN 152 VDG++ D+GVSS Q+D +RGFSF K GPLDMRM +G SA+ + +A Sbjct: 59 VAQQNDLIGKVDGILLDIGVSSPQLDDAERGFSFMKDGPLDMRMDPTTGRSAAQWLAEAE 118 Query: 153 VKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATR 212 + D+T ++ LGEEK RIAH +++ R+ P TT+ L+ L+ + V K+ HPATR Sbjct: 119 LDDITHVIKKLGEEKFGKRIAHKVLEVREHTPITTTKQLADLVDEAVPV-KDKFKHPATR 177 Query: 213 SFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAV 272 +FQA+RI++N+E+EE+ L+SA K LK GG L+V+SFHSLEDR+VK+F +S Sbjct: 178 TFQAIRIYINSELEEIQTALQSAVKVLKPGGRLVVISFHSLEDRIVKQFIRKQSKGEALP 237 Query: 273 RHMIPSNAHPAVFQSITKKVV----VPTQEDVAFNRRSRSAKLRAGMR 316 R + ++A + +++T K V P+ +V N RSRS+ LR R Sbjct: 238 RGLPLTDAQ--INKNLTLKAVGKAIKPSAAEVERNPRSRSSVLRIAQR 283 >gi|303258244|ref|ZP_07344251.1| S-adenosyl-methyltransferase MraW [Burkholderiales bacterium 1_1_47] gi|331001080|ref|ZP_08324711.1| S-adenosyl-methyltransferase MraW [Parasutterella excrementihominis YIT 11859] gi|302858997|gb|EFL82081.1| S-adenosyl-methyltransferase MraW [Burkholderiales bacterium 1_1_47] gi|329569385|gb|EGG51163.1| S-adenosyl-methyltransferase MraW [Parasutterella excrementihominis YIT 11859] Length = 322 Score = 194 bits (492), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 120/309 (38%), Positives = 177/309 (57%), Gaps = 16/309 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H PVL E+ LL P V +D TFG GG+SR + S +IA DRD AV + Sbjct: 8 HRPVLAEESPRLLVTDPNGVYVDGTFGRGGHSRLILEKLSPQGRLIAFDRDEEAVKAAAQ 67 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +F + A F+ +++ + G+D G+ D+GVSS QID +RGFSF+ GPL Sbjct: 68 IQ---DPRFQIIHAPFASMKEELAKIGIDKVTGIFLDIGVSSPQIDDPERGFSFRFDGPL 124 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S G +A++ + +A+ ++ ++ LGEE+ A + A AI K R P T+ L+ Sbjct: 125 DMRMDTSAGETAAEWIARADAAEMAKVFKDLGEERFAMKAAKAIEKVRTKEPILRTKQLA 184 Query: 193 SLIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 LI T+ +K + HPATR FQA+RI VN E+E+L + L SA L GG+L V+SFH Sbjct: 185 DLIAATLPRNKKDSAQHPATRIFQAIRIHVNQELEQLKRALESAGSLLLPGGVLAVISFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVR---HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SLEDR+VKKFF + + + ++PS +F + ++P++++ N R+RS Sbjct: 245 SLEDRIVKKFFEAAANPASCIDPRLPLLPSQLPQPLFNRAVR--ILPSEKECEENPRARS 302 Query: 309 AKLRAGMRT 317 + LR RT Sbjct: 303 SVLRGASRT 311 >gi|212702349|ref|ZP_03310477.1| hypothetical protein DESPIG_00362 [Desulfovibrio piger ATCC 29098] gi|212674227|gb|EEB34710.1| hypothetical protein DESPIG_00362 [Desulfovibrio piger ATCC 29098] Length = 334 Score = 193 bits (491), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 123/318 (38%), Positives = 176/318 (55%), Gaps = 20/318 (6%) Query: 20 HVPVLLEKVIALLNPA-------PGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFA 70 H+PVL+++ +A L P P + ILD T G G+S + + + + ALDRD A Sbjct: 16 HIPVLMKETLAALQPVLDAGRDRPVR-ILDGTLGMAGHSCAMLQAAPMAELCALDRDEEA 74 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSF 127 + + + + ++ + +SQ ++ + D G VD V+ D+GVSS+Q+D +RGFSF Sbjct: 75 LELARRRLEPFGDRVHTYHCRYSQFEEALDDLGWEKVDAVLLDIGVSSLQLDEAERGFSF 134 Query: 128 QKSGPLDMRMS--CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 GPLDMRM SA VN+ N L + LGEE QA RIA AIV RQ +P Sbjct: 135 YGDGPLDMRMDQHSGAPSAWHWVNRENFDRLKECIATLGEEPQAGRIARAIVDARQKSPI 194 Query: 186 QTTQDLSSLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 TT L++L++K + R HPATR+FQALR+ VN+E+ EL + L + L GG Sbjct: 195 DTTAQLAALVEKAYPPAWRAKARRHPATRTFQALRMAVNDELGELRRFLDAILGRLSLGG 254 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH--PAVFQSITKKVVVPTQEDVA 301 L V+SFHSLEDR+VK+ + RH+ H P V + + KK V +++A Sbjct: 255 RLSVISFHSLEDRMVKQTMRYWAEGCRCPRHVPVCVCHHVPEV-EILYKKPVQADDDELA 313 Query: 302 FNRRSRSAKLRAGMRTVE 319 N R+ SAKLRA + E Sbjct: 314 VNPRASSAKLRAVEKIAE 331 >gi|308380285|ref|ZP_07669154.1| hypothetical protein TMKG_00427 [Mycobacterium tuberculosis SUMu011] gi|308361967|gb|EFP50818.1| hypothetical protein TMKG_00427 [Mycobacterium tuberculosis SUMu011] Length = 425 Score = 193 bits (491), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 118/321 (36%), Positives = 177/321 (55%), Gaps = 20/321 (6%) Query: 20 HVPVLLEKVIALLNPAPGK--------VILDATFGAGGYSRSFCK--MGSNVIALDRDPF 69 HVPVL ++ LL PA + V+LDAT GAGG++ F + G +I LDRDP Sbjct: 94 HVPVLAQRCFELLTPALTRYYPDGSQAVLLDATIGAGGHAERFLEGLPGLRLIGLDRDPT 153 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSSMQIDCGDR 123 A+ + + + ++ +L + L + + G VDG++FDLGVSSMQ+D +R Sbjct: 154 ALDVARSRLVRFADRLTLVHTRYDCLGAALAESGYAAVGSVDGILFDLGVSSMQLDRAER 213 Query: 124 GFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GF++ PLDMRM + ++A+D+VN + L IL GEE+ A RIA IV+RR Sbjct: 214 GFAYATDAPLDMRMDPTTPLTAADIVNTYDEAALADILRRYGEERFARRIAAGIVRRRAK 273 Query: 183 APFQTTQDLSSLIQKTVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 PF +T +L +L+ + + + R+ HPA R+FQALRI VN+E+E L + +A AL Sbjct: 274 TPFTSTAELVALLYQAIP-APARRVGGHPAKRTFQALRIAVNDELESLRTAVPAALDALA 332 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300 GG + V+++ SLEDR+VK+ FA + H F+S+T + ++ Sbjct: 333 IGGRIAVLAYQSLEDRIVKRVFAEAVASATPAGLPVELPGHEPRFRSLTHGAERASVAEI 392 Query: 301 AFNRRSRSAKLRAGMRTVERS 321 N RS +LRA R R+ Sbjct: 393 ERNPRSTPVRLRALQRVEHRA 413 >gi|308233784|ref|ZP_07664521.1| S-adenosyl-methyltransferase MraW [Atopobium vaginae DSM 15829] gi|328943767|ref|ZP_08241232.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Atopobium vaginae DSM 15829] gi|327491736|gb|EGF23510.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Atopobium vaginae DSM 15829] Length = 319 Score = 193 bits (491), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 115/310 (37%), Positives = 179/310 (57%), Gaps = 12/310 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 HVPV+L +V L+ PG V+ D T G G++ + + + + +D+D A+ E Sbjct: 7 HVPVMLTEVEQELSLKPGDVVCDCTLGGAGHTVALAQHVAPDGLSLGIDQDDAALKAASE 66 Query: 77 TMRDYKE--QFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 M + + FSQL + + GVD +FDLGVSS Q+D +RGFS+ + Sbjct: 67 RMDRLAPCVTYKFLKGNFSQLDNLLVQAQVIGVDAFLFDLGVSSPQLDVAERGFSYHEDA 126 Query: 132 PLDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM + ++A++V+ N DLTRIL G+EK A+RIAH IV++R+ +P +TT Sbjct: 127 PLDMRMDPRNNTLTAAEVIQTYNEADLTRILRSYGDEKFAARIAHVIVEQRKLSPIRTTL 186 Query: 190 DLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L ++++ + ++ + HPA ++FQALRI VN+E++ L GL+ A + L GG + ++ Sbjct: 187 ELVEVVKRAIPAAARRHGKHPARKTFQALRIEVNHELDVLETGLKQAIRWLNPGGRICII 246 Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 ++HSLED+LVK + + G V + V +TKK +V T +V N R+R Sbjct: 247 AYHSLEDKLVKHILSEYAQGCVCPADFPVCVCGRKPVLDILTKKPLVATPSEVECNPRAR 306 Query: 308 SAKLRAGMRT 317 SA LRA RT Sbjct: 307 SALLRAARRT 316 >gi|237654092|ref|YP_002890406.1| S-adenosyl-methyltransferase MraW [Thauera sp. MZ1T] gi|237625339|gb|ACR02029.1| S-adenosyl-methyltransferase MraW [Thauera sp. MZ1T] Length = 311 Score = 193 bits (491), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 124/306 (40%), Positives = 175/306 (57%), Gaps = 12/306 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMG--SNVIALDRDPFAVSCGQE 76 HV VLL + + L +D TFG GG+SR+ ++G +IA DRDP A++ GQ Sbjct: 7 HVSVLLSEAVDALAIRADGFYVDGTFGRGGHSRAVLQRLGPQGRLIAFDRDPLAIAAGQG 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + +L + FS L D + GV DGV+ DLGVSS Q+D RG SF+ PL Sbjct: 67 V---GDARLTLVHSAFSALDDELARLGVQAVDGVLLDLGVSSPQLDDAARGMSFRFDAPL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S G + ++ + +A+V +T ++ GEE+ A IA AI R TT L+ Sbjct: 124 DMRMDTSRGQTVAEWLAEASVGQITEVIREYGEERFAHAIAKAIANARAGGAVATTGQLA 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +L++K V + + HPATR+FQALRIF+N E+EEL++ L L+ GG L V+SFHS Sbjct: 184 ALVEKAVRTREPGQ-HPATRTFQALRIFINQELEELSRVLPVCVSRLRPGGRLAVISFHS 242 Query: 253 LEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK+F S V+ R + + PA + K + P++ +VA N R+RSA L Sbjct: 243 LEDRIVKRFMRDESRPPVLPRRLPVRAADLPAPRLQLVGKAMRPSEAEVAANPRARSAVL 302 Query: 312 RAGMRT 317 R RT Sbjct: 303 RVAERT 308 >gi|332638186|ref|ZP_08417049.1| 16S rRNA m(4)C1402 methyltranserfase [Weissella cibaria KACC 11862] Length = 314 Score = 193 bits (491), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 121/305 (39%), Positives = 177/305 (58%), Gaps = 12/305 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQE 76 +HV VLL + I LN P V +DAT G GG+S+ + + D+D A++ E Sbjct: 5 NHVTVLLNEAIDNLNVKPDGVYVDATLGGGGHSQLLASRLTTGKLWSFDQDITAINYNTE 64 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + + Q F L+ + + GV DG+V+DLGVSS Q D G RGFS+ Sbjct: 65 HLAAELAAGKVAFIQNNFRNLKAALAEVGVTEIDGIVYDLGVSSPQFDDGQRGFSYNYDA 124 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S ++A VVN+ + DL RIL GEEK A +IA AI ++R P +TT + Sbjct: 125 PLDMRMDQSQELNARTVVNEWDFHDLLRILSRYGEEKFAKQIARAIERQRAIKPIETTFE 184 Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I+ + ++ HPA RSFQA+RI VN+E+ + + L A LK GG + V++ Sbjct: 185 LVEVIKSAIPAAARRTGGHPAKRSFQAIRIAVNDELGVVEESLAQALDMLKVGGRISVIT 244 Query: 250 FHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 FHSLEDRLVK F ++ +V A +IP P F+ +++K ++P++E++A N R+ Sbjct: 245 FHSLEDRLVKTMFKEKTALPEVPAGLPIIPDEMQPD-FKLVSRKPILPSEEEMAENHRAH 303 Query: 308 SAKLR 312 SAKLR Sbjct: 304 SAKLR 308 >gi|226360238|ref|YP_002778016.1| S-adenosyl-methyltransferase MraW [Rhodococcus opacus B4] gi|262825479|sp|C1AU63|RSMH_RHOOB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|226238723|dbj|BAH49071.1| methyltransferase MraW [Rhodococcus opacus B4] Length = 338 Score = 193 bits (491), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 116/326 (35%), Positives = 180/326 (55%), Gaps = 30/326 (9%) Query: 20 HVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPF 69 H+PVLL + LL PA G V++DAT G GG+S F + + +ALDRDP Sbjct: 17 HIPVLLHRADELLGPALTANDPHGGGAVMIDATLGLGGHSEHFLRTYPQLRLVALDRDPH 76 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYV------PDKGVDGVVFDLGVSSMQIDCGDR 123 A+ + + ++ + + ++D + P + V G++FDLGVSSMQ+D DR Sbjct: 77 ALEIAGGRLAPFADRITFVHTRYDGIEDALTQAGLSPRESVHGILFDLGVSSMQLDESDR 136 Query: 124 GFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GF++ PLDMRM +GI+A++V+N + DL RIL GEE+ A +IA +V++R Sbjct: 137 GFAYSIDAPLDMRMDPTTGITAAEVLNTYSHGDLARILSTYGEERFAGKIASEVVRQRAK 196 Query: 183 APFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 PF T+ L L+ +T+ ++ HPA R+FQALR+ VN E++ L + +A AL Sbjct: 197 EPFTTSAALVELLYRTIPAATRRTGGHPAKRTFQALRVEVNGELDSLRAAVPAALDALTV 256 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRS------GKVMAVRHMIPSNAHPAVFQSITKKVVVP 295 GG ++ +S+ SLEDR+VK+ RS G + + M P F+ +T+ Sbjct: 257 GGRVVFMSYQSLEDRVVKQEITPRSKSKSPEGLPVELPGMGPE------FRILTRGAERA 310 Query: 296 TQEDVAFNRRSRSAKLRAGMRTVERS 321 +++++ N RS +LRA R RS Sbjct: 311 SEQEIEENPRSAPVRLRAAERIARRS 336 >gi|121638047|ref|YP_978271.1| S-adenosyl-methyltransferase MraW [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148661981|ref|YP_001283504.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis H37Ra] gi|148823374|ref|YP_001288128.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis F11] gi|224990541|ref|YP_002645228.1| S-adenosyl-methyltransferase [Mycobacterium bovis BCG str. Tokyo 172] gi|253798770|ref|YP_003031771.1| methylase MraW [Mycobacterium tuberculosis KZN 1435] gi|254364966|ref|ZP_04981012.1| conserved hypothetical protein [Mycobacterium tuberculosis str. Haarlem] gi|260205463|ref|ZP_05772954.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis K85] gi|289443672|ref|ZP_06433416.1| MraW methylase MraW [Mycobacterium tuberculosis T46] gi|289447793|ref|ZP_06437537.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis CPHL_A] gi|289554048|ref|ZP_06443258.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605] gi|289570281|ref|ZP_06450508.1| conserved hypothetical protein [Mycobacterium tuberculosis T17] gi|289574851|ref|ZP_06455078.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis K85] gi|289745439|ref|ZP_06504817.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis 02_1987] gi|289750761|ref|ZP_06510139.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] gi|289754275|ref|ZP_06513653.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis EAS054] gi|289758287|ref|ZP_06517665.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis T85] gi|289762326|ref|ZP_06521704.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] gi|297731746|ref|ZP_06960864.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis KZN R506] gi|298525659|ref|ZP_07013068.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis 94_M4241A] gi|306793634|ref|ZP_07431936.1| hypothetical protein TMEG_02533 [Mycobacterium tuberculosis SUMu005] gi|308375796|ref|ZP_07668118.1| hypothetical protein TMGG_00723 [Mycobacterium tuberculosis SUMu007] gi|308376929|ref|ZP_07668385.1| hypothetical protein TMHG_01355 [Mycobacterium tuberculosis SUMu008] gi|308377928|ref|ZP_07668626.1| hypothetical protein TMIG_00833 [Mycobacterium tuberculosis SUMu009] gi|308379135|ref|ZP_07668903.1| hypothetical protein TMJG_00427 [Mycobacterium tuberculosis SUMu010] gi|2104313|emb|CAB08662.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv] gi|31618937|emb|CAD97042.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97] gi|121493695|emb|CAL72170.1| Conserved hypothetical protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|134150480|gb|EBA42525.1| conserved hypothetical protein [Mycobacterium tuberculosis str. Haarlem] gi|148506133|gb|ABQ73942.1| S-adenosyl-methyltransferase [Mycobacterium tuberculosis H37Ra] gi|148721901|gb|ABR06526.1| conserved hypothetical protein [Mycobacterium tuberculosis F11] gi|224773654|dbj|BAH26460.1| S-adenosyl-methyltransferase [Mycobacterium bovis BCG str. Tokyo 172] gi|253320273|gb|ACT24876.1| methylase MraW [Mycobacterium tuberculosis KZN 1435] gi|289416591|gb|EFD13831.1| MraW methylase MraW [Mycobacterium tuberculosis T46] gi|289420751|gb|EFD17952.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis CPHL_A] gi|289438680|gb|EFD21173.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605] gi|289539282|gb|EFD43860.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis K85] gi|289544035|gb|EFD47683.1| conserved hypothetical protein [Mycobacterium tuberculosis T17] gi|289685967|gb|EFD53455.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis 02_1987] gi|289691348|gb|EFD58777.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] gi|289694862|gb|EFD62291.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis EAS054] gi|289709832|gb|EFD73848.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] gi|289713851|gb|EFD77863.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis T85] gi|298495453|gb|EFI30747.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis 94_M4241A] gi|308337978|gb|EFP26829.1| hypothetical protein TMEG_02533 [Mycobacterium tuberculosis SUMu005] gi|308345155|gb|EFP34006.1| hypothetical protein TMGG_00723 [Mycobacterium tuberculosis SUMu007] gi|308349457|gb|EFP38308.1| hypothetical protein TMHG_01355 [Mycobacterium tuberculosis SUMu008] gi|308354088|gb|EFP42939.1| hypothetical protein TMIG_00833 [Mycobacterium tuberculosis SUMu009] gi|308358031|gb|EFP46882.1| hypothetical protein TMJG_00427 [Mycobacterium tuberculosis SUMu010] gi|326903782|gb|EGE50715.1| hypothetical protein TBPG_01665 [Mycobacterium tuberculosis W-148] gi|328458533|gb|AEB03956.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 4207] Length = 396 Score = 193 bits (491), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 118/321 (36%), Positives = 177/321 (55%), Gaps = 20/321 (6%) Query: 20 HVPVLLEKVIALLNPAPGK--------VILDATFGAGGYSRSFCK--MGSNVIALDRDPF 69 HVPVL ++ LL PA + V+LDAT GAGG++ F + G +I LDRDP Sbjct: 65 HVPVLAQRCFELLTPALTRYYPDGSQAVLLDATIGAGGHAERFLEGLPGLRLIGLDRDPT 124 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSSMQIDCGDR 123 A+ + + + ++ +L + L + + G VDG++FDLGVSSMQ+D +R Sbjct: 125 ALDVARSRLVRFADRLTLVHTRYDCLGAALAESGYAAVGSVDGILFDLGVSSMQLDRAER 184 Query: 124 GFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GF++ PLDMRM + ++A+D+VN + L IL GEE+ A RIA IV+RR Sbjct: 185 GFAYATDAPLDMRMDPTTPLTAADIVNTYDEAALADILRRYGEERFARRIAAGIVRRRAK 244 Query: 183 APFQTTQDLSSLIQKTVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 PF +T +L +L+ + + + R+ HPA R+FQALRI VN+E+E L + +A AL Sbjct: 245 TPFTSTAELVALLYQAIP-APARRVGGHPAKRTFQALRIAVNDELESLRTAVPAALDALA 303 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300 GG + V+++ SLEDR+VK+ FA + H F+S+T + ++ Sbjct: 304 IGGRIAVLAYQSLEDRIVKRVFAEAVASATPAGLPVELPGHEPRFRSLTHGAERASVAEI 363 Query: 301 AFNRRSRSAKLRAGMRTVERS 321 N RS +LRA R R+ Sbjct: 364 ERNPRSTPVRLRALQRVEHRA 384 >gi|154685933|ref|YP_001421094.1| S-adenosyl-methyltransferase MraW [Bacillus amyloliquefaciens FZB42] gi|263446791|sp|A7Z4D7|RSMH_BACA2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|154351784|gb|ABS73863.1| YlxA [Bacillus amyloliquefaciens FZB42] Length = 311 Score = 193 bits (491), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 116/303 (38%), Positives = 177/303 (58%), Gaps = 11/303 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H VLL + + LN P +D T G G+S + S +IA D+D A+ ++ Sbjct: 4 HKTVLLRETVDGLNIKPDGTYVDCTLGGAGHSTYLLQQLSEKGRLIAFDQDDTALENAKK 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 T+ +YK Q L ++ F L++ + + G VDG++FDLGVSS Q+D +RGFS+ PL Sbjct: 64 TLSEYKGQLILVKSNFRYLKECLHEHGITSVDGILFDLGVSSPQLDTPERGFSYHHDAPL 123 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S ++A +VVN+ +DL RI GEEK + +IA I + R+ +P QTT L Sbjct: 124 DMRMDQSAALTAKEVVNEWRYEDLVRIFFKYGEEKFSKQIARKIEEAREKSPIQTTGQLV 183 Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 LI+ + ++ + HPA R FQA+RI VN+E++ + L A + LK GG + V++FH Sbjct: 184 DLIKDAIPAPARRSGGHPAKRVFQAIRIAVNDELQVFEEALLQAIEVLKPGGRVSVITFH 243 Query: 252 SLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+ K F +S ++ +IP P + + IT+K + ++E++ N R+RSA Sbjct: 244 SLEDRMCKMTFKEKSSLPELPPGLPVIPEEFEPEL-KLITRKPITASKEELEENNRARSA 302 Query: 310 KLR 312 KLR Sbjct: 303 KLR 305 >gi|308232054|ref|ZP_07663988.1| hypothetical protein TMAG_00354 [Mycobacterium tuberculosis SUMu001] gi|308370931|ref|ZP_07667052.1| hypothetical protein TMCG_00261 [Mycobacterium tuberculosis SUMu003] gi|308372156|ref|ZP_07667311.1| hypothetical protein TMDG_00643 [Mycobacterium tuberculosis SUMu004] gi|308215154|gb|EFO74553.1| hypothetical protein TMAG_00354 [Mycobacterium tuberculosis SUMu001] gi|308330345|gb|EFP19196.1| hypothetical protein TMCG_00261 [Mycobacterium tuberculosis SUMu003] gi|308334178|gb|EFP23029.1| hypothetical protein TMDG_00643 [Mycobacterium tuberculosis SUMu004] Length = 405 Score = 193 bits (491), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 118/321 (36%), Positives = 177/321 (55%), Gaps = 20/321 (6%) Query: 20 HVPVLLEKVIALLNPAPGK--------VILDATFGAGGYSRSFCK--MGSNVIALDRDPF 69 HVPVL ++ LL PA + V+LDAT GAGG++ F + G +I LDRDP Sbjct: 74 HVPVLAQRCFELLTPALTRYYPDGSQAVLLDATIGAGGHAERFLEGLPGLRLIGLDRDPT 133 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSSMQIDCGDR 123 A+ + + + ++ +L + L + + G VDG++FDLGVSSMQ+D +R Sbjct: 134 ALDVARSRLVRFADRLTLVHTRYDCLGAALAESGYAAVGSVDGILFDLGVSSMQLDRAER 193 Query: 124 GFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GF++ PLDMRM + ++A+D+VN + L IL GEE+ A RIA IV+RR Sbjct: 194 GFAYATDAPLDMRMDPTTPLTAADIVNTYDEAALADILRRYGEERFARRIAAGIVRRRAK 253 Query: 183 APFQTTQDLSSLIQKTVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 PF +T +L +L+ + + + R+ HPA R+FQALRI VN+E+E L + +A AL Sbjct: 254 TPFTSTAELVALLYQAIP-APARRVGGHPAKRTFQALRIAVNDELESLRTAVPAALDALA 312 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300 GG + V+++ SLEDR+VK+ FA + H F+S+T + ++ Sbjct: 313 IGGRIAVLAYQSLEDRIVKRVFAEAVASATPAGLPVELPGHEPRFRSLTHGAERASVAEI 372 Query: 301 AFNRRSRSAKLRAGMRTVERS 321 N RS +LRA R R+ Sbjct: 373 ERNPRSTPVRLRALQRVEHRA 393 >gi|284991692|ref|YP_003410246.1| S-adenosyl-methyltransferase MraW [Geodermatophilus obscurus DSM 43160] gi|284064937|gb|ADB75875.1| S-adenosyl-methyltransferase MraW [Geodermatophilus obscurus DSM 43160] Length = 330 Score = 193 bits (490), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 118/301 (39%), Positives = 174/301 (57%), Gaps = 12/301 (3%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74 HVPVLL++V LL PA G V++DAT G G+S + + G ++ LDRDP A + Sbjct: 17 HVPVLLDRVTELLAPACAADGAVLVDATLGLAGHSLALLRAHPGLRLVGLDRDPDARAEA 76 Query: 75 QETMRD--YKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK 129 + D ++ ++ A F +L + G V V+FDLGVSS+Q+D DRGFS+ Sbjct: 77 TRRLTDAGVADRATVVPAVFDELPGVLDRLGLTEVQAVLFDLGVSSLQLDRPDRGFSYAA 136 Query: 130 SGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM S +A+DVVN L R+L + GEE+ A+RIA AI + R+ APF T Sbjct: 137 DAPLDMRMDPSAPRTAADVVNTYPTDRLARVLRVYGEERFATRIAQAITRERERAPFTHT 196 Query: 189 QDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 + L+ L++ ++ ++ HPA R+FQALRI VN+E+ L + L +A AL GG + V Sbjct: 197 ERLAHLVRASIPAATRRTGGHPAKRTFQALRIEVNDELGVLERALPAALDALTVGGRIAV 256 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 ++FHSLEDR+VK+ A+ + +P + +T+ P++ +VA N RS Sbjct: 257 ITFHSLEDRIVKQTLAAGAVDRTPPGLPVPLPEMGPTLRLLTRGGEAPSEAEVAANPRSA 316 Query: 308 S 308 S Sbjct: 317 S 317 >gi|91786965|ref|YP_547917.1| S-adenosyl-methyltransferase MraW [Polaromonas sp. JS666] gi|123060224|sp|Q12EM3|RSMH_POLSJ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|91696190|gb|ABE43019.1| methyltransferase [Polaromonas sp. JS666] Length = 305 Score = 193 bits (490), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 124/303 (40%), Positives = 178/303 (58%), Gaps = 13/303 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H VLL + IA L+ P +DATFG GG+SR S + A D+D A++ Q Sbjct: 7 HRTVLLNEAIAALHINPDGHYIDATFGRGGHSRLLLSQLSPQGRLTAFDKDLDAIAEAQ- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 T+ D + FS+ F L +P GV+ DLGVSS QID RGFSF+ GPLDMR Sbjct: 66 TITDPR--FSIRHEGFMHL-GQLPAASAAGVLMDLGVSSPQIDNPVRGFSFRSEGPLDMR 122 Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQTTQDLSSL 194 M + G S ++ + A+++ + ++ GEE+ A ++A AI +RRQ P +TT +L+ + Sbjct: 123 MDTTRGQSVAEWLADASIETMAEVIREYGEERFAQQVAKAIDRRRQERGPLRTTAELAEV 182 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 + V + + PATR+FQALRIF+N E+EEL Q L ++ K L+ GG L+V+SFHSLE Sbjct: 183 VAGAVKTREPGK-DPATRTFQALRIFINAELEELQQALEASLKVLQPGGRLVVISFHSLE 241 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 DR+VK+F A +S +V R A P + + P++E++A N RSRSA +R Sbjct: 242 DRIVKQFIAGQSREVFDRRAPF---AAPKAMRLKALGRIKPSEEEIAANPRSRSAVMRVA 298 Query: 315 MRT 317 RT Sbjct: 299 ERT 301 >gi|15841657|ref|NP_336694.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis CDC1551] gi|161352465|ref|NP_216681.2| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis H37Rv] gi|161511532|ref|NP_855838.2| S-adenosyl-methyltransferase MraW [Mycobacterium bovis AF2122/97] gi|215403555|ref|ZP_03415736.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis 02_1987] gi|215431098|ref|ZP_03429017.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis EAS054] gi|218753888|ref|ZP_03532684.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis GM 1503] gi|219558145|ref|ZP_03537221.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis T17] gi|254551204|ref|ZP_05141651.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260187163|ref|ZP_05764637.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis CPHL_A] gi|260201284|ref|ZP_05768775.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis T46] gi|294993552|ref|ZP_06799243.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis 210] gi|297634755|ref|ZP_06952535.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis KZN 4207] gi|307084822|ref|ZP_07493935.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis SUMu012] gi|308369641|ref|ZP_07666771.1| hypothetical protein TMBG_00713 [Mycobacterium tuberculosis SUMu002] gi|313659080|ref|ZP_07815960.1| 16S rRNA m(4)C1402 methyltranserfase [Mycobacterium tuberculosis KZN V2475] gi|54037824|sp|P65430|RSMH_MYCBO RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|54041487|sp|P65429|RSMH_MYCTU RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262831560|sp|A5U4J2|RSMH_MYCTA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263460389|sp|A1KKK8|RSMH_MYCBP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263460410|sp|C1AQ81|RSMH_MYCBT RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|13881910|gb|AAK46508.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551] gi|308326909|gb|EFP15760.1| hypothetical protein TMBG_00713 [Mycobacterium tuberculosis SUMu002] gi|308365608|gb|EFP54459.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis SUMu012] Length = 344 Score = 193 bits (490), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 118/321 (36%), Positives = 177/321 (55%), Gaps = 20/321 (6%) Query: 20 HVPVLLEKVIALLNPAPGK--------VILDATFGAGGYSRSFCK--MGSNVIALDRDPF 69 HVPVL ++ LL PA + V+LDAT GAGG++ F + G +I LDRDP Sbjct: 13 HVPVLAQRCFELLTPALTRYYPDGSQAVLLDATIGAGGHAERFLEGLPGLRLIGLDRDPT 72 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSSMQIDCGDR 123 A+ + + + ++ +L + L + + G VDG++FDLGVSSMQ+D +R Sbjct: 73 ALDVARSRLVRFADRLTLVHTRYDCLGAALAESGYAAVGSVDGILFDLGVSSMQLDRAER 132 Query: 124 GFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GF++ PLDMRM + ++A+D+VN + L IL GEE+ A RIA IV+RR Sbjct: 133 GFAYATDAPLDMRMDPTTPLTAADIVNTYDEAALADILRRYGEERFARRIAAGIVRRRAK 192 Query: 183 APFQTTQDLSSLIQKTVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 PF +T +L +L+ + + + R+ HPA R+FQALRI VN+E+E L + +A AL Sbjct: 193 TPFTSTAELVALLYQAIP-APARRVGGHPAKRTFQALRIAVNDELESLRTAVPAALDALA 251 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300 GG + V+++ SLEDR+VK+ FA + H F+S+T + ++ Sbjct: 252 IGGRIAVLAYQSLEDRIVKRVFAEAVASATPAGLPVELPGHEPRFRSLTHGAERASVAEI 311 Query: 301 AFNRRSRSAKLRAGMRTVERS 321 N RS +LRA R R+ Sbjct: 312 ERNPRSTPVRLRALQRVEHRA 332 >gi|312959049|ref|ZP_07773568.1| S-adenosyl-L-methionine-dependent methyltransferase [Pseudomonas fluorescens WH6] gi|311286819|gb|EFQ65381.1| S-adenosyl-L-methionine-dependent methyltransferase [Pseudomonas fluorescens WH6] Length = 315 Score = 193 bits (490), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 120/308 (38%), Positives = 179/308 (58%), Gaps = 20/308 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQ 75 +H+ VLL++ + L LD TFG GG+SR S G ++ D+DP A++ GQ Sbjct: 8 NHITVLLDEAVEALAVRADGCYLDGTFGRGGHSRLILSQLGPGGKLLGFDKDPQAIATGQ 67 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +F + Q +F++L V ++G V GV+ DLGVSS Q+D +RGFSF G Sbjct: 68 -ALAAEDGRFVVVQRSFAELGAEVAERGMAGKVAGVLLDLGVSSPQLDDPERGFSFMNDG 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + G+SA+ + A V+++ R+ GEE+ A R+A A+V+RR+ PF+ T D Sbjct: 127 PLDMRMDPTRGVSAAQFIATAPVEEIARVFKEYGEERFAGRMARAVVERRELQPFERTAD 186 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ ++ K + +PATR+FQ LRI VNNE+ +L GL +A AL+ GG L+V+SF Sbjct: 187 LAEVL-KVANPAWEKGKNPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLVVISF 245 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVV------PTQEDVAFNR 304 HSLEDR+VK F V +P N P F++ K+ + ++ ++ N Sbjct: 246 HSLEDRIVKLFMRR---LVKGESDNLPRNL-PVRFEAFVPKIKIHGKAQFASEAELKANP 301 Query: 305 RSRSAKLR 312 RSRSA +R Sbjct: 302 RSRSAVMR 309 >gi|32490963|ref|NP_871217.1| hypothetical protein WGLp214 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|30173030|sp|Q8D2Y8|RSMH_WIGBR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|25166169|dbj|BAC24360.1| yabC [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 309 Score = 193 bits (490), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 118/308 (38%), Positives = 181/308 (58%), Gaps = 23/308 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAV--SCG 74 H+PV+L +VI + P +DATFG GG+SR S +I +DRDP ++ +C Sbjct: 2 HIPVMLNEVIKSIKIIPNGTYIDATFGCGGHSRCILSKLNEKGKLIVIDRDPKSIEFAC- 60 Query: 75 QETMRDYKEQFSLFQATFSQLQDY-VPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +++D + FS++ Y + K V G++FDLG+S QI +RGFSF Sbjct: 61 --SIKD--RRLIPIHGNFSKILKYSIKYKIFGKVQGILFDLGLSFSQIKDSNRGFSFMHD 116 Query: 131 GPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 GPLDMRM+ GISA + +N AN+KD++ ++ GEEK +I++ I K R+ TT+ Sbjct: 117 GPLDMRMNNLHGISAKEWINNANIKDISFVIKEFGEEKFYKKISNVICKYRKIKNINTTK 176 Query: 190 DLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +LI K YF K + HPA RSFQA+RI++NNE++EL L K + G ++ + Sbjct: 177 ELVNLINKACGYFYK--KKHPARRSFQAIRIYINNELQELKLALNDIIKIISPKGRIVFI 234 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK----KVVVPTQEDVAFNR 304 SFHSLEDR++KKF + S K + + +P +I K K + P+++++ +N+ Sbjct: 235 SFHSLEDRIIKKFIINNSRKKI-YPYKLPILESKIKNDNIYKLKYFKKIQPSKKEILYNK 293 Query: 305 RSRSAKLR 312 +SRSA LR Sbjct: 294 KSRSAILR 301 >gi|71909118|ref|YP_286705.1| methyltransferase [Dechloromonas aromatica RCB] gi|88909196|sp|Q47A96|RSMH_DECAR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|71848739|gb|AAZ48235.1| methyltransferase [Dechloromonas aromatica RCB] Length = 308 Score = 193 bits (490), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 118/301 (39%), Positives = 175/301 (58%), Gaps = 12/301 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76 HV VLLE+ + L V +DATFG GG+SR S ++A+DRDP A++ G E Sbjct: 7 HVTVLLEEAVGALAIKADGVYVDATFGRGGHSRRILSELNQNGRLVAVDRDPQAIAAGAE 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +F L F +L + + G VDGV+FD+GVSS QID G+RGFSF+ PL Sbjct: 67 I---DDSRFLLVHRAFGELAEAADEAGIRDVDGVLFDVGVSSPQIDDGERGFSFRYDAPL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + G +A++ + +A ++D+T ++ GEE+ A +IA +V R P TT + Sbjct: 124 DMRMDTTQGETAAEWLARAEIRDITEVIRNYGEERFAFQIAKKVVAARLEQPIVTTGQFA 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +L+++TV + + PATRSFQALRI +N E+ +L L A + LK GG L+V+SFHS Sbjct: 184 ALVRETVRTREPGQ-DPATRSFQALRIHINQELRQLEVALPQALELLKPGGRLVVISFHS 242 Query: 253 LEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK F +S M + ++ P + + + P+ ++ N R+RSA + Sbjct: 243 LEDRIVKNFMRDQSIADAMPKSLPLRADQLPKPKLRLVGRPIKPSAAEIDANPRARSAVM 302 Query: 312 R 312 R Sbjct: 303 R 303 >gi|330501916|ref|YP_004378785.1| S-adenosyl-methyltransferase MraW [Pseudomonas mendocina NK-01] gi|328916202|gb|AEB57033.1| S-adenosyl-methyltransferase MraW [Pseudomonas mendocina NK-01] Length = 315 Score = 193 bits (490), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 116/306 (37%), Positives = 180/306 (58%), Gaps = 18/306 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H+ VLL++ + L +D TFG GG+SR + G ++ D+DP A++ G E Sbjct: 9 HITVLLDEAVEGLAVRADGCYMDGTFGRGGHSRLILQKLGPGGRLLGFDKDPLAIATG-E 67 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F + Q +F++L D +G V G++ DLGVSS Q+D +RGFSF GP Sbjct: 68 ALAAEDGRFVVVQRSFAELGDEAVVRGISGQVSGILLDLGVSSPQLDDPERGFSFLNDGP 127 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ +G+SA+D + A+ ++ R++ GEE+ A R+A A+V+RR PF T DL Sbjct: 128 LDMRMNPHAGVSAADWIATADEDEIARVMKDYGEERFAKRMARAVVQRRAERPFTRTADL 187 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ + + + +PATR+FQ +RI VNNE+ +L +GL +A + L+ GG L+V+SFH Sbjct: 188 AKVLTEANPAWEKGK-NPATRAFQGIRIHVNNELGDLERGLEAALETLEVGGRLVVISFH 246 Query: 252 SLEDRLVKKFFASRSGKVMAVR-----HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 SLEDR+VK+F R K A + +IP P + + K V + ++ N RS Sbjct: 247 SLEDRIVKQFM-KRQAKGEADKLPRDLPIIPKAFEPRL--KLIGKPVYAAEAELKANPRS 303 Query: 307 RSAKLR 312 RSA +R Sbjct: 304 RSAVMR 309 >gi|228992654|ref|ZP_04152580.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus pseudomycoides DSM 12442] gi|228766986|gb|EEM15623.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus pseudomycoides DSM 12442] Length = 317 Score = 193 bits (490), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 116/307 (37%), Positives = 177/307 (57%), Gaps = 11/307 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72 T+ HV VLL++ + L+ PG +D T G GG+S G +IA D+D A+ Sbjct: 7 TMFKHVTVLLKETVDGLDIKPGGTYVDCTLGGGGHSSYLLSQLTEGGKLIAFDQDEIAIQ 66 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK 129 +E Y +QF ++ F L + + + G VDG++FDLGVSS Q+D +RGFS+ Sbjct: 67 NAKERFSSYGDQFITVKSNFRYLSEKLHELGITEVDGILFDLGVSSPQLDTPERGFSYHH 126 Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM ++A DVVN + + L RI GEEK + +IA I R++ +TT Sbjct: 127 DAPLDMRMDQDAPLTAYDVVNNWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETT 186 Query: 189 QDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L LI++ + ++ HPA R FQA+RI VN+E++ + L SA + +K GG + V Sbjct: 187 GELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRISV 246 Query: 248 VSFHSLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 ++FHSLEDR+ K F S + ++ +IP P + + IT+K ++P+ E++ N R Sbjct: 247 ITFHSLEDRICKTTFKRNSTTPQLPPGLPIIPDEFKPKL-KLITRKPILPSDEELEENNR 305 Query: 306 SRSAKLR 312 +RSAKLR Sbjct: 306 ARSAKLR 312 >gi|317009278|gb|ADU79858.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori India7] Length = 308 Score = 193 bits (490), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 122/306 (39%), Positives = 182/306 (59%), Gaps = 20/306 (6%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVSCGQ 75 G H VLL++V+ P V++D T G GG+S++ K +I +D+D FA + Sbjct: 6 GLHQSVLLQEVLQAFTPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFAQEIAK 65 Query: 76 ETMRDYKEQFSLFQATFSQ-----LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 E ++ ++ +++L F++ L+ + +K + GV+ DLGVSS+Q+D +RGF+F S Sbjct: 66 ERLKAFEGRYNLLSGGFAKRFKESLETH--NKEIKGVLVDLGVSSLQLDDDNRGFNFH-S 122 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM S ++A V+N +V L +I GE K+ +IAH I +RR PF+ + Sbjct: 123 HTLDMRMDLESDLNAQKVINSYSVVALEKIFRDYGEIKEYKKIAHKIAERRAKKPFKDAK 182 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 DLS + FSKN +IHPAT FQA+RI VN+E+EEL + L+ A + LK G +L V+S Sbjct: 183 DLSDFLSS---FSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCA-RNLK-GAILCVIS 237 Query: 250 FHSLEDRLVKKFFASRSGKVMA---VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 FHSLED+LVK F + SN H A+ + +TKK + P+ E++ NRRS Sbjct: 238 FHSLEDKLVKNAFKDYAKNCTCDPLSFKCACSNNH-ALGEILTKKPITPSPEEIKNNRRS 296 Query: 307 RSAKLR 312 RSAK+R Sbjct: 297 RSAKMR 302 >gi|321460668|gb|EFX71708.1| hypothetical protein DAPPUDRAFT_111399 [Daphnia pulex] Length = 322 Score = 193 bits (490), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 120/318 (37%), Positives = 178/318 (55%), Gaps = 27/318 (8%) Query: 26 EKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCG-QETMRDYK 82 ++V+ + P + LD TFGAGG++R N V LDRDP A Q Sbjct: 3 KEVLEMFQPQQNQKFLDLTFGAGGHTRKLLSSARNITVYTLDRDPLAYELAIQLASETTN 62 Query: 83 EQFSLFQATFSQLQDYVPDKGV----DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138 Q FS L + + DG++ D G SSMQ D +RGFS K+GPLDMRM Sbjct: 63 GQVVPLLGKFSDLPQLLSNPETCNFFDGILVDCGCSSMQFDTRERGFSLSKNGPLDMRMD 122 Query: 139 CSGI----SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQTTQDLSS 193 + + SA D++ + L+R+L + GEEKQA +IA AI++ R QTT +L+ Sbjct: 123 QNRLENQPSAKDILANIDEDSLSRVLKVYGEEKQAKKIARAIIEARYLFKSLQTTHELAQ 182 Query: 194 LIQKTVYFS-KNNRI----HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 LI+ T S + +++ H AT++FQALRI VN+E+ EL +R A + LK GG L+ + Sbjct: 183 LIESTCGLSTRTDKLQRPSHVATKTFQALRILVNDELNELEFAVRYAHRTLKIGGKLVTI 242 Query: 249 SFHSLEDRLVKKF-----FASRSGKVMA-----VRHMIPSNAHPAVFQSITKKVVVPTQE 298 +FHSLEDR+VK+ ++++S ++ + ++P ++SI K V+VP+ E Sbjct: 243 TFHSLEDRIVKEHLHGFDYSAKSEEIYKNYGRQLDPLLPLADMERKWESINKHVLVPSDE 302 Query: 299 DVAFNRRSRSAKLRAGMR 316 +V N RSRSAKLRA ++ Sbjct: 303 EVNGNPRSRSAKLRAAIK 320 >gi|317010927|gb|ADU84674.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori SouthAfrica7] Length = 308 Score = 193 bits (490), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 118/301 (39%), Positives = 181/301 (60%), Gaps = 14/301 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVSCGQET 77 H VLL++V+ + P V++D T G GG+S++ K +I +D+D A +E Sbjct: 8 HQSVLLQEVLQVFAPLEKGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKHAQEIAKER 67 Query: 78 MRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++ ++E++ + F++ ++ + G + GV+ DLGVSS+Q+D DRGF+F S LD Sbjct: 68 LKTFEERYHILSGGFAKRFKEALETHGEQIKGVLVDLGVSSLQLDDDDRGFNFH-SPTLD 126 Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM S ++A V+N +V L +I GE K+ +IAH IV+RR PF+ +DLS Sbjct: 127 MRMDLESELNAQKVINSYSVVALEKIFKDYGEIKEYKKIAHHIVERRAKKPFKDAKDLSD 186 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 + SKN +IHPAT FQA+RI VN+E+EEL + L+ A + LK G +L V+SFHSL Sbjct: 187 FLSS---LSKNKKIHPATLVFQAIRIEVNHELEELKEFLQDA-RNLK-GAILCVISFHSL 241 Query: 254 EDRLVKKFFASRSGKVM--AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 ED LVK F + + A+ + + A+ + +TKK + P+ E++ NRRSRSAK+ Sbjct: 242 EDALVKNAFKDYAKNCICDALSFKCTCSNNHALGEILTKKPITPSPEEIKRNRRSRSAKM 301 Query: 312 R 312 R Sbjct: 302 R 302 >gi|150390647|ref|YP_001320696.1| S-adenosyl-methyltransferase MraW [Alkaliphilus metalliredigens QYMF] gi|263433264|sp|A6TS69|RSMH1_ALKMQ RecName: Full=Ribosomal RNA small subunit methyltransferase H 1; AltName: Full=16S rRNA m(4)C1402 methyltransferase 1; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH 1 gi|149950509|gb|ABR49037.1| S-adenosyl-methyltransferase MraW [Alkaliphilus metalliredigens QYMF] Length = 311 Score = 192 bits (489), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 113/308 (36%), Positives = 178/308 (57%), Gaps = 9/308 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQ 75 +H VLL++ I L+ + +D T G G+S+ K +G +I +D+D A+S Sbjct: 4 EHTSVLLKECIEALDIKENGIYVDGTLGGAGHSQEILKVLGKEGLLIGIDQDENALSAAG 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + ++ + L F L + + +DGV+ DLGVSS Q+D +RGFS+ + P Sbjct: 64 ERLEEHGTKVKLVHDNFHNLDKILENLEITTIDGVLLDLGVSSHQLDERERGFSYMQDAP 123 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM SG SA D+VN + K+L RI+ GE++ A RIA IV+ R+ AP +TT + Sbjct: 124 LDMRMDRRSGFSARDIVNDYSEKELERIIKEYGEDRWARRIAQFIVQERELAPIETTHQM 183 Query: 192 SSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+K V ++ + HPA R+FQA+RI VN E+E + + +A K +K GG + ++SF Sbjct: 184 VEVIKKAVPKGARKDGPHPAKRTFQAIRIEVNQELEIIEATIEAAAKHMKPGGRIAIISF 243 Query: 251 HSLEDRLVKKFFAS-RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK F ++ V + + + + +T+K ++P++ ++ N RSRSA Sbjct: 244 HSLEDRIVKNVFRRLQNPCVCPPQFPVCKCEKEQMVKIVTRKPILPSEAELEVNPRSRSA 303 Query: 310 KLRAGMRT 317 KLR R Sbjct: 304 KLRVAERV 311 >gi|261838057|gb|ACX97823.1| hypothetical protein KHP_0616 [Helicobacter pylori 51] Length = 308 Score = 192 bits (489), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 122/304 (40%), Positives = 181/304 (59%), Gaps = 20/304 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVSCGQET 77 H VLL++V+ P V++D T G GG+S++ K +I +D+D FA +E Sbjct: 8 HQSVLLQEVLQAFAPLEEGVLIDCTLGLGGHSKAILSQKPHLKLIGIDKDKFAQEIAKER 67 Query: 78 MRDYKEQFSLFQATFSQ-----LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 ++ ++ +++L F++ L+ + +K + GV+ DLGVSS+Q+D +RGF+F S Sbjct: 68 LKAFEGRYNLLSGGFAKRFKEALETH--NKEIKGVLVDLGVSSLQLDDDNRGFNFH-SHA 124 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM SG++A V+N +V L +I GE K+ +IAH I +RR PF+ +DL Sbjct: 125 LDMRMDLESGLNAQKVINSYSVVALEKIFRDYGEIKEYKKIAHKITERRAKKPFKDAKDL 184 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 S + FSKN +IHPAT FQA+RI VN E+EEL + L+ A + LK G +L V+SFH Sbjct: 185 SDFLSS---FSKNKKIHPATLVFQAVRIEVNRELEELKEFLQCA-RNLK-GAILCVISFH 239 Query: 252 SLEDRLVKKFFASRSGKVMA---VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SLED LVK F + + SN H A+ + +TKK + P+ E++ NRRSRS Sbjct: 240 SLEDALVKNAFKDYAKNCICNPLSFKCTCSNNH-ALGEILTKKPITPSPEEIKNNRRSRS 298 Query: 309 AKLR 312 AK+R Sbjct: 299 AKMR 302 >gi|315633809|ref|ZP_07889098.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Aggregatibacter segnis ATCC 33393] gi|315477059|gb|EFU67802.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Aggregatibacter segnis ATCC 33393] Length = 322 Score = 192 bits (489), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 133/322 (41%), Positives = 182/322 (56%), Gaps = 34/322 (10%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCG 74 +H VLL + + L + +D TFG GG+SR K+ +N +IA+DRDP AV Sbjct: 10 AEHATVLLHETVDGLALKENGIYIDGTFGRGGHSRLILSKLSANGRLIAIDRDPKAVVEA 69 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVP--DK-----GVDGVVFDLGVSSMQIDCGDRGFSF 127 Q K Q S F S D +P +K +DG++ DLGVSS Q+D +RGFSF Sbjct: 70 Q------KIQDSRFHIEHSAFSDILPICEKLNLVGKIDGILLDLGVSSPQLDDAERGFSF 123 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP-- 184 K GPLDMRM S G+SA++ + + +DL +L GEE+ A +IA AIV +SA Sbjct: 124 MKDGPLDMRMDDSKGMSAAEWLQHVSEQDLAWVLKTFGEERFAKKIASAIVNYNKSAVQN 183 Query: 185 ----FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 T L+ LI +TV F K+ HPATRSFQA+RIF+N+E++EL + L+SA L Sbjct: 184 GGECLTRTLQLAELIAQTVPF-KDKHKHPATRSFQAIRIFINSELDELEKVLQSALTVLA 242 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSG-----KVMAVRH-MIPSNAHPAVFQSITKKVVV 294 GG L ++SFHSLEDR+VK F +S K + +R I N V K ++ Sbjct: 243 PGGRLSIISFHSLEDRMVKHFMRKQSQGEDIPKGLPLREDQIQRNQTLKVI----GKAIM 298 Query: 295 PTQEDVAFNRRSRSAKLRAGMR 316 P+ E++A N R+RSA LR R Sbjct: 299 PSDEEIAQNPRARSAVLRIAER 320 >gi|319791660|ref|YP_004153300.1| s-adenosyL-methyltransferase mraw [Variovorax paradoxus EPS] gi|315594123|gb|ADU35189.1| S-adenosyl-methyltransferase MraW [Variovorax paradoxus EPS] Length = 307 Score = 192 bits (489), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 130/311 (41%), Positives = 181/311 (58%), Gaps = 16/311 (5%) Query: 15 HTIGDHVPVLL-EKVIALLN--PAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDP 68 +T H VLL E V ALL+ A +DATFG GG++R+ +IA D+D Sbjct: 2 NTPWTHTTVLLNEAVEALLSGSTAATGTYVDATFGRGGHARAILARLAPEGRLIAFDKDA 61 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 AV+ E R +FS+ F L + +PD V+G++ DLGVSS QID RGFSF+ Sbjct: 62 EAVA---EAARISDARFSIRHQGFRSLGE-LPDASVNGLLMDLGVSSPQIDNPVRGFSFR 117 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQ 186 GPLDMRM + G S ++ + A ++ + ++ GEE+ A +IA AIV RRQ P Sbjct: 118 FDGPLDMRMDTTRGESVAEWLATAELQQIAEVIRDYGEERFAVQIAKAIVARRQERGPIS 177 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 TT +L+ L+ TV + + +PATR+FQA RIF+N E+EEL Q L ++ L+ GG L Sbjct: 178 TTTELAELVAGTVKTREQGQ-NPATRTFQAFRIFINAELEELQQALEASLSVLQPGGRLA 236 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+SFHSLEDR+VK+F A S +V R A P V + + + P++++V N RS Sbjct: 237 VISFHSLEDRIVKQFIAKHSKEVYDRRAPF---AAPKVMKLNALERIKPSEDEVRGNPRS 293 Query: 307 RSAKLRAGMRT 317 RSA LR RT Sbjct: 294 RSAILRVAERT 304 >gi|169334628|ref|ZP_02861821.1| hypothetical protein ANASTE_01031 [Anaerofustis stercorihominis DSM 17244] gi|169259345|gb|EDS73311.1| hypothetical protein ANASTE_01031 [Anaerofustis stercorihominis DSM 17244] Length = 308 Score = 192 bits (489), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 114/304 (37%), Positives = 173/304 (56%), Gaps = 12/304 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+ VL ++ I +LN + +D T G G+S CK S I +D+D F + Sbjct: 3 HISVLYQETIDMLNIKEDGIYVDGTMGGAGHSLGICKKLSEEGIFIGIDQDDFVFDRAKV 62 Query: 77 TMR--DYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSG 131 + D K++F + F +++ + D G+D G++ DLGVSS QID RGFSF+K G Sbjct: 63 RLESTDCKKEF--VKGNFHDIKEILMDLGIDKIDGMMADLGVSSFQIDDETRGFSFKKDG 120 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S SA ++VN + +DL R++ GEE+ A IA I+K R+ P +TT + Sbjct: 121 PLDMRMDKSKSFSAKELVNTYSYEDLRRVISEYGEEQFAGNIAKHILKNREEKPIETTYE 180 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L +I+ + + HPA ++FQA+RI VN+EI+ L Q + L GG L V++F Sbjct: 181 LVEIIKNAIPKKFHQMKHPAKKTFQAIRIEVNDEIDALKQSVEDMIDVLDKGGRLAVITF 240 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VKK F+ + + + + + +T+K ++PT+E++ N RSRSA Sbjct: 241 HSLEDRIVKKVFSEYAKGCTCPKEFPVCVCGNTPKVKVLTRKPLLPTEEEIEANPRSRSA 300 Query: 310 KLRA 313 KLR Sbjct: 301 KLRV 304 >gi|83648530|ref|YP_436965.1| S-adenosyl-methyltransferase MraW [Hahella chejuensis KCTC 2396] gi|123530830|sp|Q2S9Y4|RSMH_HAHCH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|83636573|gb|ABC32540.1| S-adenosyl-methyltransferase MraW [Hahella chejuensis KCTC 2396] Length = 309 Score = 192 bits (489), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 122/305 (40%), Positives = 178/305 (58%), Gaps = 20/305 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MG--SNVIALDRDPFAVSCGQE 76 HV VLL + + L + +D TFG GG+S K +G ++ +D+DP A E Sbjct: 8 HVTVLLAEAVEALGVKADGLYIDGTFGRGGHSAEILKALGPQGRLLGIDKDPRARRTAME 67 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++F Q +F+ + +V + GVDGV+ DLGVSS Q+D +RGFSF + GPL Sbjct: 68 RFSG-DDRFLFRQGSFADMASFVSELQWPGVDGVLLDLGVSSPQLDEAERGFSFMQDGPL 126 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM SG+SAS+ VN A ++++++L LGEE+ A R+A AIV RQ+ P T L+ Sbjct: 127 DMRMDPDSGLSASEWVNTAKEEEISKVLWDLGEERFARRMAKAIVAARQTQPITRTLQLA 186 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++ + + +PATR+FQA+RIF+N E+++LAQGL A LK GG L V+SFHS Sbjct: 187 EIVAAANPRWEKGK-NPATRAFQAIRIFINRELDDLAQGLEQAFGVLKPGGRLTVISFHS 245 Query: 253 LEDRLVKKFF-----ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 LEDR+VK++ ++ K + V P A + + KK+ E VA N R+R Sbjct: 246 LEDRMVKQYMRDIVRGPKTPKWLPVVDDAPPKA-----KLVGKKIRAGETEVVA-NVRAR 299 Query: 308 SAKLR 312 SA +R Sbjct: 300 SAVMR 304 >gi|289671027|ref|ZP_06492102.1| S-adenosyl-methyltransferase MraW [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 352 Score = 192 bits (489), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 128/315 (40%), Positives = 181/315 (57%), Gaps = 15/315 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HVPVL +V+ L LD TFG GG++R + G ++ +D+DP A++ ++ Sbjct: 18 HVPVLYTQVLDGLQVTDNGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDPEAIAVAEQ 77 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 T + S+ + +F+ L V VDG++ DLGVSS Q+D RGFSF K GPLDMR Sbjct: 78 TF-GGDARVSIHRGSFAGLGQVVAAAAVDGILLDLGVSSPQLDVAGRGFSFGKDGPLDMR 136 Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M SG SA++ + A+ +++ +L GEE+Q+ RIA AIV RR P T L+ LI Sbjct: 137 MDPDSGQSAAEWLAHASDREIADVLWTYGEERQSRRIARAIVARRAEQPLLRTAQLADLI 196 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 +V +++ HPATRSFQA+RI++N E+++L GL +A ALK GG L V+SFHSLED Sbjct: 197 -ASVMPRGDSKTHPATRSFQAIRIYINRELDDLEAGLDAALAALKPGGRLAVISFHSLED 255 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 R+VK+F A R K +P A P V Q ++ + E + N R+RSA LR Sbjct: 256 RIVKQFMA-RYAKAPPSNRRLP-EAQPFVPTLQLVSGAIKADDAE-LNVNPRARSAVLRV 312 Query: 314 ----GMRTVERSIED 324 GM E + D Sbjct: 313 AEKLGMGNGESGMGD 327 >gi|317180415|dbj|BAJ58201.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori F32] Length = 308 Score = 192 bits (489), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 122/304 (40%), Positives = 179/304 (58%), Gaps = 20/304 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVSCGQET 77 H VLL++V+ P V++D T G GG+S++ K +I +D+D FA +E Sbjct: 8 HQSVLLQEVLQAFAPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFAQEIAKER 67 Query: 78 MRDYKEQFSLFQATFSQ-----LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 ++ ++ +++L F++ L+ + DK + GV+ DLGVSS+Q+D +RGF+F S Sbjct: 68 LKAFEGRYNLLSGGFAKRFKEALETH--DKEIKGVLVDLGVSSLQLDDDNRGFNFH-SHA 124 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM G ++A V+N V L +I GE K+ +IAH I +RR PF+ +DL Sbjct: 125 LDMRMDLEGGLNAQKVINSYPVVALEKIFKDYGEIKEYKKIAHKIAERRAKKPFKDAKDL 184 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 S + FSKN +IHPAT FQA+RI VN E+EEL + L+ A + LK G +L V+SFH Sbjct: 185 SDFLSS---FSKNKKIHPATLVFQAVRIEVNRELEELKEFLQCA-RNLK-GAILCVISFH 239 Query: 252 SLEDRLVKKFFASRSGKVMA---VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SLED LVK F + + SN H A+ + +TKK + P+ E++ NRRSRS Sbjct: 240 SLEDALVKNAFKDYAKNCICDPLSFKCACSNNH-ALGEILTKKPITPSPEEIKNNRRSRS 298 Query: 309 AKLR 312 AK+R Sbjct: 299 AKMR 302 >gi|311087661|gb|ADP67740.1| S-adenosyl-methyltransferase MraW [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 271 Score = 192 bits (489), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 108/258 (41%), Positives = 167/258 (64%), Gaps = 12/258 (4%) Query: 63 ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQI 118 ++DRDP A S G + ++D +F + FS+L D+ ++ V+G++FDLGVSS+QI Sbjct: 12 SIDRDPIAFSIGSK-IKD--SRFHIINENFSKLLDFAKNEKIIGKVNGIIFDLGVSSIQI 68 Query: 119 DCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177 D RGFSF+ GPLDMRM+ + GISAS+ + ++NVK+++ +L GEE+ + +IA+AI Sbjct: 69 DDYRRGFSFKNDGPLDMRMNPNYGISASEWLFESNVKEISFVLKNFGEERFSRKIAYAIK 128 Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 +R Q +T +L+++I+KT+ +KN HPA RSFQA+RI++N E+EE+ + L + K Sbjct: 129 RRSQIKKITSTLELANIIKKTIP-TKNKFKHPARRSFQAIRIYINQELEEIQKALENTLK 187 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV---VV 294 LK GG + ++SFHSLEDRLVKKF S K + M + + K+ ++ Sbjct: 188 ILKPGGRISIISFHSLEDRLVKKFMIKNSTKAIIPYGMPITEEQLNRLTTCKLKIINRIL 247 Query: 295 PTQEDVAFNRRSRSAKLR 312 PTQ ++ N R+RS+ LR Sbjct: 248 PTQNEINNNPRARSSVLR 265 >gi|328955350|ref|YP_004372683.1| S-adenosyl-methyltransferase MraW [Coriobacterium glomerans PW2] gi|328455674|gb|AEB06868.1| S-adenosyl-methyltransferase MraW [Coriobacterium glomerans PW2] Length = 321 Score = 192 bits (489), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 122/311 (39%), Positives = 177/311 (56%), Gaps = 16/311 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MG--SNVIALDRDPFAVSCGQE 76 H PV++ +V+ L P VI+D T G G++ + MG +I +D+D A++ Sbjct: 12 HEPVMVAEVLEALRPEESSVIVDCTLGGAGHAVRLAREMGPEGQLIGIDQDDMALNSAAA 71 Query: 77 TMRDYKEQFS--LFQATFSQLQDY-----VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 + + L + F L + VP GVDG +FDLGVSS Q+D +RGFS+ + Sbjct: 72 RLDREVPGVAHRLMKGNFRDLDELLCAAEVP--GVDGFLFDLGVSSPQLDIPNRGFSYHE 129 Query: 130 SGPLDMRMS--CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 PLDMRM G SA+DVVN + +L RIL GEE+ A IA IV+RR++ P T Sbjct: 130 DAPLDMRMDPQSGGPSAADVVNGYSEAELIRILHAFGEERFAGAIAREIVRRRKTKPIST 189 Query: 188 TQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T +L +I+ + ++ HPA RSFQA+RI VN+E++ L GL++A + L G + Sbjct: 190 TTELVEVIKAAIPAAARRQGPHPARRSFQAIRIEVNHELDALLIGLQAALRWLNPAGRIC 249 Query: 247 VVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V+S+HSLEDR+VK+ F S S G + + + + ITKK +V T E+V N R Sbjct: 250 VISYHSLEDRIVKRLFQSASRGCTCPPDIPVCVCGNVPILKVITKKPLVATTEEVERNPR 309 Query: 306 SRSAKLRAGMR 316 SRSAK+R M+ Sbjct: 310 SRSAKIRVAMK 320 >gi|307718580|ref|YP_003874112.1| S-adenosyl-methyltransferase MraW [Spirochaeta thermophila DSM 6192] gi|306532305|gb|ADN01839.1| S-adenosyl-methyltransferase MraW [Spirochaeta thermophila DSM 6192] Length = 324 Score = 192 bits (489), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 118/300 (39%), Positives = 173/300 (57%), Gaps = 9/300 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVSCGQET 77 HVPVL E+V A L+ G +++DAT G GG+S + + G ++ +D DP +S E Sbjct: 8 HVPVLREEVGAFLSVREG-LVVDATLGEGGHSEALLESRPGIRILGVDADPIMLSRAGER 66 Query: 78 MRDYKEQFSLFQATFSQLQDYVP--DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + + ++ L Q F ++ + P D+ V G++ DLG+SS ++ RGFSF + PLDM Sbjct: 67 LSRFGDRVRLVQGWFDEVLESFPAEDRPV-GILMDLGISSYHLEKSGRGFSFLRREPLDM 125 Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 R+S + ASDVVN + +L I GEE + RIA AIV R+ P T+ L+ + Sbjct: 126 RLSPYLPMKASDVVNTYSETELVDIFSRFGEEPFSKRIARAIVSERRKMPITTSDHLAEV 185 Query: 195 IQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 + K V ++ RIHPATR FQALRI VN E+E + + +R+ + L GG + V+SFHSL Sbjct: 186 VMKAVPPKARRGRIHPATRVFQALRIVVNKELERVERAVRAGVRLLAPGGRMAVISFHSL 245 Query: 254 EDRLVKKFFASRSGKVMA-VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 EDR+VK+ F +G I + + +TKK V P +E+V N SRSA+LR Sbjct: 246 EDRIVKRLFRFYAGACTCPPEEPICRCGGQGIVEVLTKKPVRPGEEEVRANPASRSARLR 305 >gi|77919804|ref|YP_357619.1| S-adenosylmethionine-dependent methyltransferase [Pelobacter carbinolicus DSM 2380] gi|88909207|sp|Q3A2F8|RSMH_PELCD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|77545887|gb|ABA89449.1| predicted S-adenosylmethionine-dependent methyltransferase [Pelobacter carbinolicus DSM 2380] Length = 314 Score = 192 bits (489), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 124/304 (40%), Positives = 175/304 (57%), Gaps = 11/304 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H V+ E+V+ L P PG+V +D T G GG++R + + ++ LDRD A+ Sbjct: 8 HSSVMPEEVLECLRPQPGEVFVDGTVGGGGHARLILEATAPDGLLVGLDRDREALEEAGR 67 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + E+ L F+ + + VDG++ DLGVSS Q+D RGFSFQ PL Sbjct: 68 QLASFGERVLLRHGNFADATRILAELDIATVDGILLDLGVSSFQLDTARRGFSFQSDAPL 127 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S G++A+DVVN + ++L RI GEE+ A RIA I K R P TT+ L+ Sbjct: 128 DMRMDTSAGMTAADVVNALSPEELARIFREYGEERYARRIARRIEKVRADEPLMTTRQLA 187 Query: 193 SLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 L++ V +RIHPATR FQALRI VN E++ L +GLR + LK GG + V+SFH Sbjct: 188 ELVRDAVPGGHVPSRIHPATRVFQALRIHVNAELDSLREGLRRSLALLKPGGRMAVISFH 247 Query: 252 SLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK+FF S + + N P V +T+K + ++ ++A N R+RSA Sbjct: 248 SLEDRIVKQFFRSEVQTCICPPGLPICACNRKPGV-ALLTRKGLKASESEIAANPRARSA 306 Query: 310 KLRA 313 LRA Sbjct: 307 VLRA 310 >gi|304396555|ref|ZP_07378436.1| S-adenosyl-methyltransferase MraW [Pantoea sp. aB] gi|304356064|gb|EFM20430.1| S-adenosyl-methyltransferase MraW [Pantoea sp. aB] Length = 313 Score = 192 bits (489), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 126/312 (40%), Positives = 182/312 (58%), Gaps = 21/312 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + LN + +D TFG GG+SR ++G +IA+DRDP A++ E Sbjct: 7 HTTVLLDEAVNGLNIREDGIYIDGTFGRGGHSRLILSQLGEKGKLIAIDRDPQAIAAAAE 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +FS+ FS L +YV ++ +DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 67 IT---DPRFSIIHGPFSALAEYVSERDLVGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G SA++ + A D+ +L GEE+ A RIA AIV+R + P T++L Sbjct: 124 LDMRMDPSRGHSAAEWLLHAEEADIAFVLKTYGEERFAKRIARAIVERNREQPMTRTREL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +I + K+ HPATRSFQA+RI++N+E+EE+ L+ A + L G L V+SFH Sbjct: 184 AEVISIAMPV-KDKFKHPATRSFQAIRIWINSELEEIDIALKGAVQVLAPQGRLSVISFH 242 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHP--AVFQSITKKV--VVPTQEDVAFNRR 305 SLEDRLVK+F SR +V A IP H A+ K + + P +V+ N R Sbjct: 243 SLEDRLVKRFMRDQSRGPQVPA---GIPMTEHQLRALGGRELKLLGKMSPGDAEVSENPR 299 Query: 306 SRSAKLRAGMRT 317 +RS+ LR +T Sbjct: 300 ARSSVLRIAEKT 311 >gi|302335888|ref|YP_003801095.1| S-adenosyl-methyltransferase MraW [Olsenella uli DSM 7084] gi|301319728|gb|ADK68215.1| S-adenosyl-methyltransferase MraW [Olsenella uli DSM 7084] Length = 323 Score = 192 bits (488), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 114/313 (36%), Positives = 181/313 (57%), Gaps = 20/313 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCG-- 74 HVPV++++VIA L+P PG+ + D T G G++ + + +D+D A+ Sbjct: 7 HVPVMIDEVIAELDPRPGETVCDCTLGGAGHTLEMARRIQPDGLSLGIDQDDMALDAASA 66 Query: 75 --QETMRDYKEQFSLFQATFSQLQDY-----VPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 + + + +F + F+ L D VP GVD +FD+GVSS Q+D +RGFS+ Sbjct: 67 RFERELPTARRRF--LKGNFASLDDLLVQAEVP--GVDCFLFDIGVSSPQLDIPERGFSY 122 Query: 128 QKSGPLDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 + PLDMRM + ++A++V N N DL RIL + G+E+ A+RIA IV+ R+ AP Sbjct: 123 HEDAPLDMRMGPGDNTLTAAEVTNSYNEADLARILRVYGDERNATRIARQIVRTREKAPI 182 Query: 186 QTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 +TT L +I+ + + + + HPA ++FQALRI VN+E++ L QGLR+A + GG Sbjct: 183 ETTLQLVEVIKAAIPAAGRRHGGHPARKTFQALRIEVNHELDALDQGLRAAVRWANTGGR 242 Query: 245 LIVVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 + V+S+HSLEDR+VK F S G V + + H + T++ +V + +VA N Sbjct: 243 ICVISYHSLEDRIVKHVFTELSQGCVCPPDLPVCACGHVPIVDVRTRRPLVASDAEVARN 302 Query: 304 RRSRSAKLRAGMR 316 R+RSA +R ++ Sbjct: 303 PRARSALMRVAVK 315 >gi|72161506|ref|YP_289163.1| methyltransferase [Thermobifida fusca YX] gi|88909224|sp|Q47QX7|RSMH_THEFY RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|71915238|gb|AAZ55140.1| bacterial methyltransferase [Thermobifida fusca YX] Length = 330 Score = 192 bits (488), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 106/294 (36%), Positives = 171/294 (58%), Gaps = 10/294 (3%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74 HVPV+LE+V+ LL PA PG + +D T G GG++ + + G ++ +DRD A+ Sbjct: 20 HVPVMLERVVELLAPALQQPGAIAVDGTLGLGGHAEALLRAHPGLRLVGVDRDTTALERA 79 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++ + Y ++ L A +S + + + G+D G++FDLGVSS Q+D +RGF++ Sbjct: 80 RQRLAPYADRIDLVHAVYSDIPRILDELGIDRVHGLLFDLGVSSPQLDEAERGFAYSYDA 139 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM +A+D+VN +LTRI + GEE+ A+RIA AIV++R P +TT Sbjct: 140 PLDMRMDRTQERTAADIVNTYPASELTRIFRVYGEERFAARIAQAIVRQRAKEPVRTTGV 199 Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ L++ + ++ + HPA R+FQALRI VN+E+ L + L +A L G ++V+S Sbjct: 200 LADLVRSAIPAAARRSGGHPAKRAFQALRIEVNSELSILERALPAALSRLAVAGRIVVLS 259 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 +HSLEDR+ K+ S +P + +T+ +PT+++ A N Sbjct: 260 YHSLEDRITKRVLTELSTDSTPPGLPVPLPDRQPELRLLTRGAELPTEQETAAN 313 >gi|319944706|ref|ZP_08018970.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Lautropia mirabilis ATCC 51599] gi|319741955|gb|EFV94378.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Lautropia mirabilis ATCC 51599] Length = 329 Score = 192 bits (488), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 129/313 (41%), Positives = 185/313 (59%), Gaps = 18/313 (5%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MG--SNVIALDRDPFAVSCG 74 G H+PVLL + +A L P V +D TFG GG+SR + +G ++ALDRDP AV+ Sbjct: 15 GAHLPVLLHEAVAALAIRPDGVYVDGTFGRGGHSRHILQALGPKGRLLALDRDPEAVAAA 74 Query: 75 QETMRDYKE-QFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + ++ + +F + A FS L + + G +DG++ DLG+SS Q+D RGFSF Sbjct: 75 RAWKQESGDARFEIVHARFSSLDEVLDAHGLTHIDGLLLDLGISSPQVDDPRRGFSFTGD 134 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP---FQ 186 GPLDMRM + G+SA + + QA V+ +T +L G+E+ A IA I RR Q Sbjct: 135 GPLDMRMDPTVGLSAHEWLMQATVEQITEVLKRDGDERFAFPIAKEIAARRDQTDGQGIQ 194 Query: 187 TTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT+ L+ L+ + KN+ +PATR+FQALRI N+E ELA+ L A + L GG L Sbjct: 195 TTRQLADLVAGVIRRRQKNSAKNPATRTFQALRIHTNDEGGELARVLNVALRRLATGGRL 254 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITKKVVVPTQEDVAFN 303 V+SFHS EDR+VK+F A +G+ A RH + A P + +S+ + V+P + +VA N Sbjct: 255 SVISFHSNEDRVVKQFIARHAGR-DAERHPVTGAWLAEP-LLKSLGR--VLPGEAEVATN 310 Query: 304 RRSRSAKLRAGMR 316 R+RSA LR R Sbjct: 311 PRARSAILRVAER 323 >gi|111018109|ref|YP_701081.1| S-adenosyl-methyltransferase [Rhodococcus jostii RHA1] gi|123340963|sp|Q0SHR3|RSMH_RHOSR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|110817639|gb|ABG92923.1| S-adenosyl-methyltransferase [Rhodococcus jostii RHA1] Length = 338 Score = 192 bits (488), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 118/326 (36%), Positives = 179/326 (54%), Gaps = 30/326 (9%) Query: 20 HVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPF 69 H+PVLL + LL PA G V++DAT G GG+S F + + IALDRDP Sbjct: 17 HIPVLLHRADELLGPALTVNDPQGGGAVMIDATLGLGGHSEHFLRTYPQLRLIALDRDPH 76 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSSMQIDCGDR 123 A+ + + ++ + + ++D + G V G++FDLGVSSMQ+D DR Sbjct: 77 ALEIAGGRLAPFADRITFVHTRYDGIEDALDQAGLPAQESVHGILFDLGVSSMQLDESDR 136 Query: 124 GFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GF++ PLDMRM +GI+A++V+N + DL RIL GEE+ A +IA IV++R Sbjct: 137 GFAYSIDAPLDMRMDPTTGITAAEVLNTYSHGDLARILSTYGEERFAGKIASEIVRQRAK 196 Query: 183 APFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 PF T+ L L+ +++ ++ HPA R+FQALR+ VN E++ L + +A AL Sbjct: 197 EPFTTSAALVELLYRSIPAATRRTGGHPAKRTFQALRVEVNGELDSLRAAVPAALDALTV 256 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRS------GKVMAVRHMIPSNAHPAVFQSITKKVVVP 295 GG ++ +S+ SLEDR+VK+ RS G + + M P F+ +T+ Sbjct: 257 GGRVVFMSYQSLEDRVVKQEITPRSKSKSPEGLPVELPGMGPE------FRILTRGAERA 310 Query: 296 TQEDVAFNRRSRSAKLRAGMRTVERS 321 ++++V N RS +LRA R RS Sbjct: 311 SEQEVEENPRSAPVRLRAAERIARRS 336 >gi|300774256|ref|ZP_07084123.1| S-adenosyl-methyltransferase MraW [Sphingobacterium spiritivorum ATCC 33861] gi|300758935|gb|EFK55764.1| S-adenosyl-methyltransferase MraW [Sphingobacterium spiritivorum ATCC 33861] Length = 303 Score = 192 bits (488), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 124/300 (41%), Positives = 170/300 (56%), Gaps = 16/300 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MG--SNVIALDRDPFAVSCGQE 76 HVPV+L++ I L+ P V +D TFG GG+SR K +G + A D+DP A+ + Sbjct: 6 HVPVMLKECIDALSIKPDGVYVDVTFGGGGHSREILKHLGPKGRLFAFDQDPDAL---EN 62 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 T+ D E+F+L F L++ + GV DG++ DLGVSS Q D DRGFS + L Sbjct: 63 TIAD--ERFTLIHQNFRFLKNNLRLNGVKEVDGILADLGVSSHQFDAADRGFSIRFDADL 120 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S + A V+N +DL RI G+ GE A +A +V R SAP +T L Sbjct: 121 DMRMDQVSDLDAKKVLNTYAEEDLHRIFGMYGEIMNAKSLAKTVVTARLSAPIETVAGLK 180 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+K V K ++ H + FQALRI VN E+E L + L LK G L+V+S+HS Sbjct: 181 EVIRKLVPKGKEHKYH--AQVFQALRIEVNKELEALQEFLLQTVSTLKPSGKLVVMSYHS 238 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDRLVK F A K + + P FQ IT+K + ++E+++ N RSRSAKLR Sbjct: 239 LEDRLVKNFMAKGKFKGEVEKDFFGNEIKP--FQVITRKAITASEEELSTNNRSRSAKLR 296 >gi|74316129|ref|YP_313869.1| methyltransferase [Thiobacillus denitrificans ATCC 25259] gi|88909225|sp|Q3SMI1|RSMH_THIDA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|74055624|gb|AAZ96064.1| methyltransferase [Thiobacillus denitrificans ATCC 25259] Length = 311 Score = 192 bits (488), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 126/308 (40%), Positives = 181/308 (58%), Gaps = 12/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGS--NVIALDRDPFAVSCGQE 76 HVPVL ++ +A L P V +DATFG GG+SR ++G+ ++ALDRDP A++ Sbjct: 5 HVPVLAQEAVAALAIKPEGVYVDATFGRGGHSRMILARLGTLGRLVALDRDPAAIAA-GA 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + D + +L Q+ FS+L + G VDG++ D+GVSS Q+D RGFSF+ PL Sbjct: 64 ALDDPR--LTLRQSEFSRLGKVLDALGIARVDGILLDIGVSSPQLDDAARGFSFRFDAPL 121 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM SGISA+D + A ++++ ++ GEE+ A IA A+V RQ +T L+ Sbjct: 122 DMRMDPGSGISAADWLATAEEEEISEVIRTYGEERFAKPIARALVAARQKEAITSTAQLA 181 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I V + + HPATRSFQA+RI++N E+EEL L + L+AGG L V+SFHS Sbjct: 182 GIIAAAVKKREPGQ-HPATRSFQAIRIYLNRELEELKAVLPQCVERLRAGGRLAVISFHS 240 Query: 253 LEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK+F + S G+ R IP+ A + + + +VA N R+RSA L Sbjct: 241 LEDRIVKRFLRTESLGEQAPPRLPIPAAMLKAGRLRLVGRAQHASDAEVAANPRARSAVL 300 Query: 312 RAGMRTVE 319 R R E Sbjct: 301 RVAERVAE 308 >gi|297566101|ref|YP_003685073.1| S-adenosyl-methyltransferase MraW [Meiothermus silvanus DSM 9946] gi|296850550|gb|ADH63565.1| S-adenosyl-methyltransferase MraW [Meiothermus silvanus DSM 9946] Length = 294 Score = 192 bits (488), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 119/305 (39%), Positives = 174/305 (57%), Gaps = 24/305 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+ VL ++ + LN PG + +DAT G GG+++ + G V+ D+DP A+ + + Sbjct: 7 HISVLYDEALNYLNVKPGGLYVDATLGGGGHTQGILQRGGRVVGFDQDPAAIERARNLLL 66 Query: 80 DYKE--QFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 Q +L +A F LQ + G VDGV+ DLGVSS D +RGFS++ GPLD Sbjct: 67 PGLSLGQLTLVEANFRDLQPKLHALGIERVDGVLADLGVSSFHFDDPERGFSYRLEGPLD 126 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRM G +A++VVN+ V++L RIL LGEE +A RIA I + R+ P +TT +L+ + Sbjct: 127 MRMGKEGQTAAEVVNELEVEELARILRELGEEPKAWRIARFIEEARERKPIETTTELAEI 186 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 +++ F HPA ++FQALRI+VN+E+ L + L +A L G L+V+SFHSLE Sbjct: 187 VRRATGFRGAG--HPARKTFQALRIYVNDELGALRELLEAAVNVLAPQGRLVVISFHSLE 244 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 DR+VK F + + +TKK + P +E+ N R+RSAKLRA Sbjct: 245 DRIVKHFLKNEP-----------------RLRVLTKKPLEPGEEEARENPRARSAKLRAA 287 Query: 315 MRTVE 319 R E Sbjct: 288 ERLRE 292 >gi|300813315|ref|ZP_07093670.1| S-adenosyl-methyltransferase MraW [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512586|gb|EFK39731.1| S-adenosyl-methyltransferase MraW [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 320 Score = 192 bits (488), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 119/306 (38%), Positives = 173/306 (56%), Gaps = 10/306 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 HV VL +V+ LN K+ +DAT G G+S+ K+ +N +I +D+D A+ E Sbjct: 5 HVSVLYNEVLENLNIRENKIYMDATIGGAGHSKGIAKILNNSGLLIGIDQDKDAIKKSHE 64 Query: 77 TMRDYKEQFSLFQAT---FSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + +Y E LF F ++ D + K VDG++ DLGVSS Q D G RGFS++ L Sbjct: 65 VLSEY-ENVKLFNTNYKNFEEILDSLHIKKVDGILLDLGVSSYQFDKGKRGFSYRFDSEL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + ++A +VN+ + +L RI+ GEE A RIA IV+ R+ TT DL Sbjct: 124 DMRMDKTLPLTAKTIVNEYSKDELYRIIKEYGEENWAKRIAEFIVQERKIKKINTTFDLV 183 Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+K V ++ + HPA R+FQALRI VN+E+ L + + + L GG L ++SFH Sbjct: 184 EVIKKAVPKGARRDGPHPAKRTFQALRIEVNDELNVLKKSIYKFVERLNPGGRLAIISFH 243 Query: 252 SLEDRLVKKFFAS-RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK F S V +I + + IT+K +VPT+E++ N RS SAK Sbjct: 244 SLEDRIVKNAFRYLYSDCVCPPEQIICTCDKKREIEIITRKPIVPTKEEIKNNNRSHSAK 303 Query: 311 LRAGMR 316 LR + Sbjct: 304 LRVAEK 309 >gi|212697080|ref|ZP_03305208.1| hypothetical protein ANHYDRO_01645 [Anaerococcus hydrogenalis DSM 7454] gi|212675855|gb|EEB35462.1| hypothetical protein ANHYDRO_01645 [Anaerococcus hydrogenalis DSM 7454] Length = 306 Score = 192 bits (488), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 117/306 (38%), Positives = 164/306 (53%), Gaps = 12/306 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H VLL + I LN + D T G GG+S+ K S +I LD+D A+ +E Sbjct: 5 HKSVLLNETIKNLNIKEDGIYADLTLGKGGHSKEILKNLSPEGLLIGLDQDKDAIKAARE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++D+ F F ++ D + K +DG + D+GVSS QID GDRGFS+ K GPL Sbjct: 65 NLKDFSNVL-FFNENFEKISDVLDKASLKMIDGALMDIGVSSYQIDNGDRGFSYMKDGPL 123 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ ++A +VN ++ +L I GEE+ + IA AIV R+ TT L Sbjct: 124 DMRMNKDNELTAKQIVNDYSLDELWEIFSKYGEERYSKTIAKAIVDYRKLHEINTTLQLR 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +++ K+V N HP R FQALRI VN E+E L L L GG L V++FHS Sbjct: 184 NIVMKSVV---TNEAHPEKRVFQALRIEVNRELEVLENTLEKIVDRLNKGGRLCVITFHS 240 Query: 253 LEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK F S K + + H + I+KK ++P+++++ NRRS SAKL Sbjct: 241 LEDRIVKNKFKEMSKKCICPPEFPVCVCNHEKKVKIISKKPILPSKDELKTNRRSHSAKL 300 Query: 312 RAGMRT 317 R R Sbjct: 301 RVCERV 306 >gi|270291462|ref|ZP_06197684.1| methylase MraW [Pediococcus acidilactici 7_4] gi|304385176|ref|ZP_07367522.1| S-adenosyl-methyltransferase MraW [Pediococcus acidilactici DSM 20284] gi|270280308|gb|EFA26144.1| methylase MraW [Pediococcus acidilactici 7_4] gi|304329370|gb|EFL96590.1| S-adenosyl-methyltransferase MraW [Pediococcus acidilactici DSM 20284] Length = 317 Score = 192 bits (487), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 117/305 (38%), Positives = 180/305 (59%), Gaps = 13/305 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGS--NVIALDRDPFAVSCGQE 76 H VLLE+ +A LN V +D T G GG+S+ K+GS ++ + D+D A+ Q+ Sbjct: 6 HTTVLLEETVAGLNIRKDGVYVDCTLGGGGHSQLILSKLGSTGHLYSFDQDQTAIDYNQD 65 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y +Q + +A F L++ + +G VDG+++DLGVSS Q D RGFS++ Sbjct: 66 HLAPYIANQQVTFIKANFRNLKNELNQRGIDHVDGILYDLGVSSPQFDDAQRGFSYRYDA 125 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S ++A VVN+ + DL RI GEEK A ++A I K R+ P TT + Sbjct: 126 PLDMRMDQSQELTAQAVVNEWSYNDLVRIFFRYGEEKYAKQVARRIEKVREQHPIVTTGE 185 Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I++ + ++ HPA R FQA+RI VN+E+ L + L A L G + V++ Sbjct: 186 LVEIIKEAIPAAARRTGGHPAKRVFQAIRIAVNDELGALEESLEQALDLLNDNGRISVIT 245 Query: 250 FHSLEDRLVKKFFASRS--GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 F SLEDRLVK+ F ++ G + A +IP++ P F+ + +K +VP+++++ NRR+ Sbjct: 246 FQSLEDRLVKRMFKEKTEIGDLPAGLPVIPADKKPH-FKLVNRKPIVPSEDELKENRRAH 304 Query: 308 SAKLR 312 SAKLR Sbjct: 305 SAKLR 309 >gi|255326220|ref|ZP_05367306.1| S-adenosyl-methyltransferase MraW [Rothia mucilaginosa ATCC 25296] gi|255296674|gb|EET76005.1| S-adenosyl-methyltransferase MraW [Rothia mucilaginosa ATCC 25296] Length = 354 Score = 192 bits (487), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 115/309 (37%), Positives = 175/309 (56%), Gaps = 15/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVI--------LDATFGAGGYSRSFCKMGSNV--IALDRDPF 69 HVPV+L++ I LL P + + +D T G GG+S + + N+ I +DRD Sbjct: 37 HVPVMLDRCINLLAPGIERAVEERGTAYVIDGTLGMGGHSEALLERFENLVLIGIDRDLQ 96 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFS 126 A + E + + ++F A + ++ + +G+DG++ DLGVSSMQ+D RGF+ Sbjct: 97 AHAIAGERLARFGDRFVPVHAVYDEIDRAMETAGVQGIDGILMDLGVSSMQLDERTRGFA 156 Query: 127 FQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 + PLDMRM+ ++A VVN+ + L RI+ GEEK ASRIA AI R +AP Sbjct: 157 YSYDAPLDMRMNSEDELTARIVVNEYSEDQLRRIIRNWGEEKFASRIARAICTARANAPL 216 Query: 186 QTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 +TT +L +IQK V ++ HPA R+FQALRI VN+E+E L + + +A +AL GG Sbjct: 217 ETTGELVRIIQKAVPVAAQRTGGHPAKRTFQALRIEVNHELEALERAVPAALEALNLGGR 276 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 + +S+HSLED++VK+ + + + H + IT+ PT E++ N Sbjct: 277 FVAMSYHSLEDKIVKRALTAEATSKAPKGFPVELEEHKPTVKIITRGAEPPTDEEIEQNS 336 Query: 305 RSRSAKLRA 313 R+ SAKLRA Sbjct: 337 RAASAKLRA 345 >gi|227538294|ref|ZP_03968343.1| S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Sphingobacterium spiritivorum ATCC 33300] gi|227241809|gb|EEI91824.1| S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Sphingobacterium spiritivorum ATCC 33300] Length = 303 Score = 192 bits (487), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 124/300 (41%), Positives = 170/300 (56%), Gaps = 16/300 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MG--SNVIALDRDPFAVSCGQE 76 HVPV+L++ I L+ P V +D TFG GG+SR K +G + A D+DP A+ + Sbjct: 6 HVPVMLKECIDALSIKPDGVYVDVTFGGGGHSREILKHLGPKGRLFAFDQDPDAL---EN 62 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 T+ D E+F+L F L++ + GV DG++ DLGVSS Q D DRGFS + L Sbjct: 63 TIAD--ERFTLIHQNFRFLKNNLRLNGVKEVDGILADLGVSSHQFDAADRGFSIRFDADL 120 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S + A V+N +DL RI G+ GE A +A +V R SAP +T L Sbjct: 121 DMRMDQVSDLDAKKVLNTYAEEDLHRIFGMYGEIMNAKSLAKTVVTARLSAPIETVAGLK 180 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+K V K ++ H + FQALRI VN E+E L + L LK G L+V+S+HS Sbjct: 181 EVIRKLVPKGKEHKYH--AQVFQALRIEVNKELEALQEFLLQTVSTLKPSGKLVVMSYHS 238 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDRLVK F A K + + P FQ IT+K + ++E+++ N RSRSAKLR Sbjct: 239 LEDRLVKNFMAKGKFKGEVEKDFFGNEIKP--FQVITRKAITASEEELSTNNRSRSAKLR 296 >gi|260893420|ref|YP_003239517.1| S-adenosyl-methyltransferase MraW [Ammonifex degensii KC4] gi|260865561|gb|ACX52667.1| S-adenosyl-methyltransferase MraW [Ammonifex degensii KC4] Length = 291 Score = 192 bits (487), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 118/303 (38%), Positives = 174/303 (57%), Gaps = 26/303 (8%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRS---FCKMGSNVIALDRDPFAVSCGQETMRD 80 ++++V+A L PG V +D T G GG++ + F +I LDRDP A+S ++ + + Sbjct: 1 MVKEVLAYLAVKPGGVYVDCTVGGGGHAAAILAFIGDEGRLIGLDRDPEALSFARKRLGN 60 Query: 81 YKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 + L A+F+ L + + +GVDGV++DLGVSS Q+D +RGF++++ PLDMR Sbjct: 61 -DPRVHLVHASFADLAEVLAGLGVRGVDGVLYDLGVSSYQLDRPERGFTYREDAPLDMRF 119 Query: 138 S-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 S ++A+D+VN+ K+L I+ GEE+ A RIA IV+ R P TT L +I+ Sbjct: 120 DPSSPVTAADLVNRLEEKELACIIREFGEERWAKRIARFIVRARARRPILTTGQLVEIIK 179 Query: 197 KTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + + S R HPA R+FQALRI VN E+E L L A LK GG L+V+S+HSLED Sbjct: 180 EAIPASARRRGPHPARRTFQALRIAVNRELEALKASLPQAADCLKPGGRLVVLSYHSLED 239 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 RLVK FF + + +TKK + P+ E+V N R+ S KLRA Sbjct: 240 RLVKGFFRQYT-----------------CLRPLTKKPLTPSPEEVKQNPRASSCKLRAAE 282 Query: 316 RTV 318 + + Sbjct: 283 KIL 285 >gi|320540413|ref|ZP_08040063.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Serratia symbiotica str. Tucson] gi|320029344|gb|EFW11373.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Serratia symbiotica str. Tucson] Length = 313 Score = 192 bits (487), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 119/310 (38%), Positives = 180/310 (58%), Gaps = 15/310 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYS-RSFCKMG--SNVIALDRDPFAVSCGQE 76 H VLL++ + LN +D TFG GG+S ++G ++A+DRDP A++ + Sbjct: 7 HATVLLDEAVNGLNIRSNGTYIDGTFGRGGHSCLILSQLGPEGRLLAIDRDPQAIAAAK- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 ++ D + F++ FS L DYV ++ +DGV+ DLGVSS Q+D +RGFSF + GP Sbjct: 66 SIDDPR--FTIVHGPFSALSDYVRERELVGQIDGVLLDLGVSSPQLDDAERGFSFMRDGP 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G+SA++ + +A D+ +L GEE+ A RIA AIV+R + P T+ L Sbjct: 124 LDMRMDPSTGLSAAEWLMKAEADDIAWVLKTFGEERFAKRIACAIVERNRVEPMTRTKQL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI + ++ HPATRSFQA+RI++N+E+EE+ L + L G L ++SFH Sbjct: 184 ADLIAGASPIREKHK-HPATRSFQAIRIYINSELEEIECALNGTLEVLAPQGRLSIISFH 242 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNRRSRS 308 SLEDR+VK+F S A + + T KV+ +P++ +VA N R+RS Sbjct: 243 SLEDRIVKRFIRHHSRGAQAPAGIPLTEEQLRSMGGRTLKVLGKMMPSEAEVAGNPRARS 302 Query: 309 AKLRAGMRTV 318 + LR R + Sbjct: 303 SVLRIAQRVL 312 >gi|308063505|gb|ADO05392.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori Sat464] Length = 308 Score = 192 bits (487), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 122/305 (40%), Positives = 181/305 (59%), Gaps = 20/305 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVSCGQET 77 H VLL++V+ P V++D T G GG+S++ K +I +D+D FA +E Sbjct: 8 HQSVLLQEVLQAFAPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFAQEIAKER 67 Query: 78 MRDYKEQFSLFQATFSQ-----LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 ++ ++ +++L F++ L+ + +K + GV+ DLGVSS+Q+D +RGF+F S Sbjct: 68 LKAFEGRYNLLSGGFAKRFKEALETH--NKEIKGVLVDLGVSSLQLDDDNRGFNFH-SHA 124 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM SG++A V+N V L +I GE K+ +IAH I +RR PF+ +DL Sbjct: 125 LDMRMDLESGLNAQKVINSYPVVALEKIFKGYGEIKEYKKIAHKIAERRAKKPFKDAKDL 184 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 S + SKN +IHPAT FQA+RI VN+E+EEL + L+ A + LK G +L V+SFH Sbjct: 185 SDFLSS---LSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCA-RNLK-GAILCVISFH 239 Query: 252 SLEDRLVKKFFASRSGKVMA---VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SLED LVK F + + SN H A+ + +TKK + P+ E++ NRRSRS Sbjct: 240 SLEDALVKNAFKDYAKNCICDPLSFKCTCSNNH-ALGEILTKKPITPSPEEIKNNRRSRS 298 Query: 309 AKLRA 313 AK+RA Sbjct: 299 AKMRA 303 >gi|160880611|ref|YP_001559579.1| S-adenosyl-methyltransferase MraW [Clostridium phytofermentans ISDg] gi|263433295|sp|A9KM86|RSMH2_CLOPH RecName: Full=Ribosomal RNA small subunit methyltransferase H 2; AltName: Full=16S rRNA m(4)C1402 methyltransferase 2; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH 2 gi|160429277|gb|ABX42840.1| S-adenosyl-methyltransferase MraW [Clostridium phytofermentans ISDg] Length = 317 Score = 192 bits (487), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 106/303 (34%), Positives = 179/303 (59%), Gaps = 11/303 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H+ VLL++ I LN P + +D T G GG++ K S I +D+D A++ + Sbjct: 10 HISVLLQETIDSLNIKPDGIYVDGTLGGGGHAYEVLKRLSPKGRYIGIDQDEDAIAAAGK 69 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + ++ +Q ++ ++ + ++ + D G VDG++ DLGVSS Q+D +RGFS++++ PL Sbjct: 70 RLSEFSDQVTIVRSNYCNMKQVLKDLGIDKVDGILLDLGVSSYQLDTPERGFSYRENAPL 129 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + ++A D+VN+ + +++ RI+ GE+K A IA IV+ R P +TT +L+ Sbjct: 130 DMRMDNRNSLTARDIVNEYSEQEIYRIIRDYGEDKFAKNIAKHIVRMRSEKPLETTDELT 189 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 I+ + + N HPA ++FQA+RI +N+E+E L L LK G L +++FH Sbjct: 190 EAIKAAIPMKIRMNTGHPAKKTFQAIRIELNHELEVLTNTLEDMIDLLKEDGRLSIITFH 249 Query: 252 SLEDRLVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK F + + + N P ITKK ++P+++++ +N+RS+SA Sbjct: 250 SLEDRIVKAAFRKNENPCVCPPNFPVCVCNRKPKGIH-ITKKPILPSEQELEYNKRSKSA 308 Query: 310 KLR 312 KLR Sbjct: 309 KLR 311 >gi|330994431|ref|ZP_08318356.1| Ribosomal RNA small subunit methyltransferase H [Gluconacetobacter sp. SXCC-1] gi|329758431|gb|EGG74950.1| Ribosomal RNA small subunit methyltransferase H [Gluconacetobacter sp. SXCC-1] Length = 319 Score = 192 bits (487), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 123/304 (40%), Positives = 176/304 (57%), Gaps = 14/304 (4%) Query: 23 VLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSNVIALDRDPFAVSCGQE----- 76 ++L +V+ L P G +D TFG GGY+R+ + +DRDP A++ GQ Sbjct: 1 MMLAEVMDYLAPRDGGRYVDGTFGGGGYARAILASCACQLWGIDRDPAAIARGQALAHTC 60 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 T D + L F+ + + + GV DG+V DLGVSS QID +RGFSF+ GPL Sbjct: 61 TAPDGTPRLHLLHGGFAGMAALLAEAGVARVDGIVLDLGVSSYQIDQAERGFSFRMDGPL 120 Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 DMRM +G +A+DVVN +L I+ GEE+ + R+A AIV R AP T L+ Sbjct: 121 DMRMGDTGPTAADVVNTLPEDELADIIYHYGEERLSRRVARAIVAARAEAPLLRTTQLAD 180 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 +++ V ++ I PATR+FQ LRI VN+E+ ++ + L A + L GG L+VVSFHSL Sbjct: 181 VVRSVVRPDRSG-IDPATRTFQGLRIHVNDELGQIRRVLEEAPRLLAPGGRLVVVSFHSL 239 Query: 254 EDRLVKKFFASRSGKVMAV-RH---MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 EDRLVK+ A +G+ A RH + A P F+ +T + + P +E+ N R+RSA Sbjct: 240 EDRLVKQAMALAAGRTPAPSRHDPRAMTQRAGPTGFRLLTGRPIRPGEEETRRNPRARSA 299 Query: 310 KLRA 313 +LRA Sbjct: 300 RLRA 303 >gi|254423474|ref|ZP_05037192.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. PCC 7335] gi|196190963|gb|EDX85927.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. PCC 7335] Length = 293 Score = 192 bits (487), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 124/303 (40%), Positives = 174/303 (57%), Gaps = 30/303 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 HVPVL E+V+A L G LDAT G GG+S K NV +ALD+D A+S ++ Sbjct: 12 HVPVLSEQVLAGLQIEDGGRYLDATVGGGGHSELILKAARNVELVALDQDLQALSAAKKR 71 Query: 78 MRDYKEQFSLFQATFSQLQDYVPD-KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + ++++ + FS+ Y P + DG++ D+GVSS Q+D RGFSF++ PLDMR Sbjct: 72 LEVWRDRTTFIHTNFSR---YEPGGRKFDGILADIGVSSTQLDQAQRGFSFRQEAPLDMR 128 Query: 137 M-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M S + A ++VN + K + + GEE+ + RIA IV++R PF TT +L+ + Sbjct: 129 MDSTQELMAKEIVNHWDEKAIADTIYEYGEERLSRRIARRIVEKR---PFSTTTELAWEV 185 Query: 196 QKTVYFSK--NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 Y +K + RIHPATR+FQALRI VN E++ L L A L GG L ++SFHSL Sbjct: 186 -AGAYPAKARHGRIHPATRTFQALRIAVNGELDVLKTLLAKAPDWLNPGGRLAIISFHSL 244 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 EDR+VK +A R + + + ITKK +V T ++V N RSRSAKLR Sbjct: 245 EDRIVK--YAYRGDERLEI---------------ITKKPLVATDQEVKENARSRSAKLRI 287 Query: 314 GMR 316 R Sbjct: 288 AER 290 >gi|91200077|emb|CAJ73120.1| similar to S-adenosyl-dependent methyltransferase [Candidatus Kuenenia stuttgartiensis] Length = 299 Score = 192 bits (487), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 115/304 (37%), Positives = 167/304 (54%), Gaps = 22/304 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQE 76 H PV++++V+ L PG +ILD T G GG++ K +I +D+D ++ +E Sbjct: 10 HEPVMVDEVLEYLCLQPGSIILDCTVGGGGHAGKIMDRIKPDGCLIGIDKDFDMLNMTKE 69 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQKSGPL 133 + D F L+ A + + + G+DGV + DLG SS+Q D +RGFSF K GPL Sbjct: 70 CLSDRGCPFKLYHADYVDADEVLRQAGIDGVHGVLLDLGASSLQFDSAERGFSFSKEGPL 129 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + A D++ + + +DL +L GEE+ + RIA I+K R + ++T L+ Sbjct: 130 DMRMDRTASFMAQDLLRKISERDLQALLKKYGEERWSKRIARRIIKERSVSGLKSTTQLA 189 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I++ V S +RIHPATR FQALRI VN E+E L + L ++ G + V+SFHS Sbjct: 190 RIIERAVP-SMRHRIHPATRVFQALRIAVNKELESLEKFLNKIHFSMVKGARIAVISFHS 248 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK F K +F ITKK + P ++ N RSRSAKLR Sbjct: 249 LEDRIVKNSFIEMEDK--------------NIFHIITKKPLRPGASEIERNARSRSAKLR 294 Query: 313 AGMR 316 R Sbjct: 295 VAER 298 >gi|289663644|ref|ZP_06485225.1| S-adenosyl-methyltransferase MraW [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 352 Score = 192 bits (487), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 128/315 (40%), Positives = 181/315 (57%), Gaps = 15/315 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HVPVL +V+ L LD TFG GG++R + G ++ +D+DP A++ ++ Sbjct: 18 HVPVLYTQVLDGLQVTDNGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDPEAIAVAEQ 77 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 T + S+ + +F+ L V VDG++ DLGVSS Q+D RGFSF K GPLDMR Sbjct: 78 TF-GGDARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLDVAGRGFSFGKDGPLDMR 136 Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M SG SA++ + A+ +++ +L GEE+Q+ RIA AIV RR P T L+ LI Sbjct: 137 MDPDSGQSAAEWLAHASDREIADVLWTYGEERQSRRIARAIVARRAEQPLLRTAQLADLI 196 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 +V +++ HPATRSFQA+RI++N E+++L GL +A ALK GG L V+SFHSLED Sbjct: 197 -ASVMPRGDSKTHPATRSFQAIRIYINRELDDLEAGLDAALAALKPGGRLAVISFHSLED 255 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 R+VK+F A R K +P A P V Q ++ + E + N R+RSA LR Sbjct: 256 RIVKQFMA-RYAKAPPSNRRLP-EAQPFVPTLQLVSGAIKADDAE-LNVNPRARSAVLRV 312 Query: 314 ----GMRTVERSIED 324 GM E + D Sbjct: 313 AEKLGMGNGESGMGD 327 >gi|169629085|ref|YP_001702734.1| S-adenosyl-methyltransferase MraW [Mycobacterium abscessus ATCC 19977] gi|263456523|sp|B1MP29|RSMH_MYCA9 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|169241052|emb|CAM62080.1| S-adenosyl-methyltransferase MraW [Mycobacterium abscessus] Length = 331 Score = 192 bits (487), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 118/319 (36%), Positives = 176/319 (55%), Gaps = 18/319 (5%) Query: 20 HVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPF 69 H+PV+L++ LL PA G V++DAT GAGG++ F M G VI LDRD Sbjct: 10 HIPVMLDRCYELLAPALTADSTDGSGAVLVDATLGAGGHTEHFLTMLPGLTVIGLDRDTN 69 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQD------YVPDKGVDGVVFDLGVSSMQIDCGDR 123 A+ + + + +F + L D Y VDGV+FDLGVSSMQ+D +R Sbjct: 70 ALDIARSRLAPFGTRFVGVHTRYDGLADALDGLGYRTTSSVDGVLFDLGVSSMQLDQAER 129 Query: 124 GFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GF++ PLDMRM+ ++A+D++N + +L+R+L GEE+ A RIA IV+RR + Sbjct: 130 GFAYSVDAPLDMRMNAQDELTAADILNTYSAVELSRVLSRFGEERFARRIADEIVRRRAN 189 Query: 183 APFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 PF + L L+ T+ ++ HPA R+FQALRI VN E+E LA + +A AL+ Sbjct: 190 EPFTRSGQLVELLYATIPAATRRTGGHPAKRTFQALRIAVNAELESLATAIPAAMAALRP 249 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 GG + V+++ SLED++VK FA+ + + + F +IT+ E++ Sbjct: 250 GGRVAVMAYQSLEDKIVKAEFAAATASRSPIDLPVELPGDAPEFTAITRGAERANDEEIE 309 Query: 302 FNRRSRSAKLRAGMRTVER 320 N RS +LRA R +R Sbjct: 310 VNPRSAPVRLRAVERVADR 328 >gi|262831574|sp|A1TAX6|RSMH_MYCVP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 324 Score = 192 bits (487), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 116/311 (37%), Positives = 176/311 (56%), Gaps = 17/311 (5%) Query: 20 HVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPF 69 H+PVLL++ + LL PA G ++DAT GAGG+S F +I LDRDP Sbjct: 7 HIPVLLDRCVELLAPALTRTSTDGSGATLVDATLGAGGHSERFLTQFPALRLIGLDRDPD 66 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRG 124 A+ + + + ++ +L + + + V + GVD ++FDLGVSSMQ+D +RG Sbjct: 67 ALHIAGDRLARFGDRVTLVRTRYDGIAAAVAESNCAATGVDAILFDLGVSSMQLDRVERG 126 Query: 125 FSFQKSGPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 F++ PLDMRM S S ++A+ V+N + K L R+L + GEEK A RIA IV+RR + Sbjct: 127 FAYSVDAPLDMRMDSGSDLTAAQVLNTYDEKALARVLRVYGEEKFAGRIAAQIVRRRANT 186 Query: 184 PFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 PF TT +L L+ + + ++ HPA R+FQALRI VN E+E L + +A + L+ Sbjct: 187 PFSTTGELVELLYQAIPAPARRTGGHPAKRTFQALRIEVNAELESLRLAIPAALEVLRPH 246 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G + V+++ SLEDR+VK FA+ + + H F ++T+ E++ Sbjct: 247 GRIAVMAYQSLEDRIVKTEFAAATASRTPPGLPVELPGHGPRFVALTRGAERADAEEIER 306 Query: 303 NRRSRSAKLRA 313 N RS S +LRA Sbjct: 307 NPRSASVRLRA 317 >gi|15601999|ref|NP_245071.1| S-adenosyl-methyltransferase MraW [Pasteurella multocida subsp. multocida str. Pm70] gi|20139143|sp|Q9CPB4|RSMH_PASMU RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|12720349|gb|AAK02218.1| unknown [Pasteurella multocida subsp. multocida str. Pm70] Length = 321 Score = 192 bits (487), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 126/320 (39%), Positives = 182/320 (56%), Gaps = 20/320 (6%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALD 65 M+ H + H+ VLL + +A L + +D TFG GG+SR ++ N +IA+D Sbjct: 1 MNDKDHFSSPAHITVLLNEAVAGLALKEKGIYIDGTFGRGGHSRLILSRLADNGRLIAID 60 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCG 121 RDP A++ + T++D + F + +FS + VDG++ DLGVSS Q+D Sbjct: 61 RDPRAIAEAK-TIQDPR--FHIEHRSFSDIPRICERLNLVGKVDGILLDLGVSSPQLDEA 117 Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF K GPLDMRM + G+SAS+ + Q + +DL +L GEE+ A RIA AIV Sbjct: 118 ERGFSFMKDGPLDMRMDTTQGLSASEWLQQVSEQDLAWVLKTFGEERFAKRIAQAIVNYN 177 Query: 181 QSA------PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234 + A P T L+ LI V F K+ HPATRSFQA+RIF+N E++EL L+S Sbjct: 178 KQALQHGTEPLSRTLQLAELIANAVPF-KDKHKHPATRSFQAIRIFINAELDELESVLKS 236 Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS--ITKKV 292 A + L G L ++SFHSLEDR+VK F +S + + + Q+ + K Sbjct: 237 AVQVLAPQGRLAIISFHSLEDRMVKHFMRKQSKGEDIPKGLPLRDDQIQRTQTLKVIGKA 296 Query: 293 VVPTQEDVAFNRRSRSAKLR 312 ++PT+++ N RSRSA LR Sbjct: 297 IMPTEQEQQQNPRSRSAVLR 316 >gi|162148953|ref|YP_001603414.1| S-adenosyl-methyltransferase MraW [Gluconacetobacter diazotrophicus PAl 5] gi|209545294|ref|YP_002277523.1| S-adenosyl-methyltransferase MraW [Gluconacetobacter diazotrophicus PAl 5] gi|263455983|sp|A9H0G9|RSMH_GLUDA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|161787530|emb|CAP57126.1| S-adenosyl-methyltransferase mraW [Gluconacetobacter diazotrophicus PAl 5] gi|209532971|gb|ACI52908.1| S-adenosyl-methyltransferase MraW [Gluconacetobacter diazotrophicus PAl 5] Length = 338 Score = 192 bits (487), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 120/298 (40%), Positives = 170/298 (57%), Gaps = 16/298 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQETM 78 H+PV+L +V+ +L P G LD TFG GGY+R+ + A+DRDP A+ GQ Sbjct: 9 HIPVMLAEVLEMLCPRDGATYLDGTFGGGGYARAILGAARCTLWAIDRDPAAIRRGQALQ 68 Query: 79 RDYKE-----QFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130 + ++ + + Q F +Q + + GV DGVV DLGVSS Q+D +RGFSF+ Sbjct: 69 AELRDAEGGMRLHMLQGGFGDMQGLLAESGVHSLDGVVLDLGVSSFQLDEVERGFSFRTD 128 Query: 131 GPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 GPLDMRM +G +A+D+VN DL I+ GEE+ + R+A AIV R AP TT Sbjct: 129 GPLDMRMGDTGPTAADIVNTMGESDLADIIYEYGEERMSRRVARAIVAARAQAPITTTFQ 188 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ +I+ V ++ I PATRSFQ +RI VN+E+ ++ GL A L GG L+VVSF Sbjct: 189 LADIIRSVVPGDRSG-IDPATRSFQGIRIHVNDELGQIVTGLEQALALLAPGGRLVVVSF 247 Query: 251 HSLEDRLVKKFFASRSGKVMA-----VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 HSLEDRLVK+ +G++ R M A P F+ +T + + P + + N Sbjct: 248 HSLEDRLVKQALNRAAGRMPGPSRHDPRSMRAEQAAPD-FRLLTSRALRPGETECRAN 304 >gi|254779311|ref|YP_003057416.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori B38] gi|263456117|sp|C7BZ94|RSMH_HELPB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|254001222|emb|CAX29192.1| Putative S-adenosyl-methyltransferase MraW [Helicobacter pylori B38] Length = 308 Score = 192 bits (487), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 122/304 (40%), Positives = 180/304 (59%), Gaps = 20/304 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVSCGQET 77 H VLL++V+ P V++D T G GG+S++ K +I +D+D FA +E Sbjct: 8 HQSVLLQEVLQAFTPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFAQEIAKER 67 Query: 78 MRDYKEQFSLFQATFSQ-----LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 ++ ++ +++L F++ L+ + +K + GV+ DLGVSS+Q+D DRGF+F S Sbjct: 68 LKAFEGRYNLLSGGFAKRFKEALETH--NKEIKGVLVDLGVSSLQLDDDDRGFNFH-SHA 124 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S ++A V+N V L +I GE K+ +IAH I +RR PF+ +DL Sbjct: 125 LDMRMDLKSDLNAQKVINSYPVIALEKIFRDYGEIKEYKKIAHKIAERRTKKPFKDAKDL 184 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 S + FSKN +IHPAT FQA+RI VN+E+EEL + L+ A + LK G +L V+SFH Sbjct: 185 SEFLSS---FSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCA-RNLK-GAILCVISFH 239 Query: 252 SLEDRLVKKFFASRSGKVMA---VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SLED LVK F + + SN H A+ + +TKK + P+ E++ NRRSRS Sbjct: 240 SLEDGLVKNAFKDYAKNCICDPLSFKCACSNNH-ALGEILTKKPITPSPEEIKNNRRSRS 298 Query: 309 AKLR 312 AK+R Sbjct: 299 AKMR 302 >gi|194246838|ref|YP_002004477.1| S-adenosyl-methyltransferase [Candidatus Phytoplasma mali] gi|262824840|sp|B3R0Q2|RSMH_PHYMT RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|193807195|emb|CAP18636.1| S-adenosyl-methyltransferase [Candidatus Phytoplasma mali] Length = 300 Score = 192 bits (487), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 119/305 (39%), Positives = 175/305 (57%), Gaps = 14/305 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76 +H+PVL ++V+ LN + +DAT G GG+S + + A D+D FA+ ++ Sbjct: 4 NHIPVLPKEVLKYLNVKSSGIYVDATLGGGGHSELILEKLKKGFLYAFDQDIFAIKQSKK 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + L + F L+ + +GV DG++FDLG+SS QID +RGFS+ + L Sbjct: 64 LFAN-NHKIELIHSNFFFLKQELNKRGVFFVDGIIFDLGLSSFQIDDKERGFSYLSNEFL 122 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM ++A ++N + + L I G+EK +S IA I+K+R P TT +L Sbjct: 123 DMRMDREQKLTAHYIINNYSFEKLRNIFFNFGQEKNSSLIAAEIIKKR---PLNTTFELV 179 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 + K F+ N + H + + FQALRI VN E+E L + L LK G ++V+SFHS Sbjct: 180 EIADK---FNYNRKGHSSKKIFQALRIEVNKELELLQKTLHQCLSLLKEGSSIVVISFHS 236 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDRLVK FF + S + + I SN V + ITKKVV P+ E++AFN RSRSAKLR Sbjct: 237 LEDRLVKNFFRANSIINLPTKLPIVSN-FKTVLKIITKKVVKPSLEEIAFNHRSRSAKLR 295 Query: 313 AGMRT 317 A ++ Sbjct: 296 AAVKN 300 >gi|323701280|ref|ZP_08112955.1| S-adenosyl-methyltransferase MraW [Desulfotomaculum nigrificans DSM 574] gi|323533882|gb|EGB23746.1| S-adenosyl-methyltransferase MraW [Desulfotomaculum nigrificans DSM 574] Length = 311 Score = 191 bits (486), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 117/303 (38%), Positives = 171/303 (56%), Gaps = 11/303 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H+ VLL++ I LN P + +D T G G+S + G +I LD+DP A++ ++ Sbjct: 5 HISVLLKESINGLNINPQGIYVDCTLGGAGHSTEILRRLGPGGRLIGLDQDPAAIANAEQ 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ + +F +A F ++ + + G VDGV+FDLGVSS Q+D +RGFS+ L Sbjct: 65 RLQRFAGRFQAVRANFVGIKQVLAELGISTVDGVLFDLGVSSYQLDTPERGFSYMHDAEL 124 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM SA ++VN ++LT I+ GEE+ A RIA IV+ RQ P TT L Sbjct: 125 DMRMDPDQPTSAKELVNDLPEEELTNIIRKYGEERWAKRIASFIVRERQRRPITTTGQLV 184 Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ V ++ HPA R+FQALRI VNNE+ L ++ A + LK GG + V++FH Sbjct: 185 EIIKAAVPANARREGPHPAKRTFQALRIAVNNELGILKGAIQGAVQVLKPGGRICVITFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNA--HPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR++K F + N P V + IT K + P E++A+N R+RSA Sbjct: 245 SLEDRIIKDTFKELANPCTCPPSFPVCNCGKQPQV-KIITNKPIEPGAEELAYNPRARSA 303 Query: 310 KLR 312 KLR Sbjct: 304 KLR 306 >gi|120404503|ref|YP_954332.1| S-adenosyl-methyltransferase MraW [Mycobacterium vanbaalenii PYR-1] gi|119957321|gb|ABM14326.1| S-adenosyl-methyltransferase MraW [Mycobacterium vanbaalenii PYR-1] Length = 378 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 116/311 (37%), Positives = 176/311 (56%), Gaps = 17/311 (5%) Query: 20 HVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPF 69 H+PVLL++ + LL PA G ++DAT GAGG+S F +I LDRDP Sbjct: 61 HIPVLLDRCVELLAPALTRTSTDGSGATLVDATLGAGGHSERFLTQFPALRLIGLDRDPD 120 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRG 124 A+ + + + ++ +L + + + V + GVD ++FDLGVSSMQ+D +RG Sbjct: 121 ALHIAGDRLARFGDRVTLVRTRYDGIAAAVAESNCAATGVDAILFDLGVSSMQLDRVERG 180 Query: 125 FSFQKSGPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 F++ PLDMRM S S ++A+ V+N + K L R+L + GEEK A RIA IV+RR + Sbjct: 181 FAYSVDAPLDMRMDSGSDLTAAQVLNTYDEKALARVLRVYGEEKFAGRIAAQIVRRRANT 240 Query: 184 PFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 PF TT +L L+ + + ++ HPA R+FQALRI VN E+E L + +A + L+ Sbjct: 241 PFSTTGELVELLYQAIPAPARRTGGHPAKRTFQALRIEVNAELESLRLAIPAALEVLRPH 300 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G + V+++ SLEDR+VK FA+ + + H F ++T+ E++ Sbjct: 301 GRIAVMAYQSLEDRIVKTEFAAATASRTPPGLPVELPGHGPRFVALTRGAERADAEEIER 360 Query: 303 NRRSRSAKLRA 313 N RS S +LRA Sbjct: 361 NPRSASVRLRA 371 >gi|223937428|ref|ZP_03629333.1| S-adenosyl-methyltransferase MraW [bacterium Ellin514] gi|223893979|gb|EEF60435.1| S-adenosyl-methyltransferase MraW [bacterium Ellin514] Length = 300 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 112/296 (37%), Positives = 168/296 (56%), Gaps = 8/296 (2%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETMRD 80 +L +V+A L G D T G G++ + S + DRD AV Q + + Sbjct: 1 MLAEVLAALKVKSGGKYADGTLGGAGHATAILAASSPNGWLFGCDRDGVAVEAAQARLAE 60 Query: 81 YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC- 139 + +F + + +++L + + + DGV+ DLGVSS Q+D +RGFSFQ+ GPLDMRM Sbjct: 61 FAGRFEISRGNYAELFETLEPESFDGVLLDLGVSSPQLDVAERGFSFQQEGPLDMRMDKR 120 Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199 ++A+D++N A+ ++L I LG+E Q+ R A AI RQ PF+TT L+ LI++ Sbjct: 121 QQLTAADLLNHASAEELAEIFWKLGDEPQSRRFARAIEHDRQQRPFETTGQLAGLIERLA 180 Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259 + HPATR FQALR+ VN+E+ L +GL A + LK GG L V++FHSLEDR VK Sbjct: 181 P-RHGKKAHPATRVFQALRMAVNDELGSLERGLTGAVRILKPGGRLAVITFHSLEDRKVK 239 Query: 260 KFFASRSGKVMAVRHM-IPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRSAKLR 312 +F +S + +P P + + +K V+P + + N RSRSA+LR Sbjct: 240 EFGRQKSRDYTFEGEVDVPELRKPRTPELKWVQRKAVLPGEAEQKENPRSRSAQLR 295 >gi|21672500|ref|NP_660567.1| hypothetical protein BUsg218 [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|8134808|sp|O85295|RSMH_BUCAP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|3435166|gb|AAC32335.1| hypothetical protein [Buchnera aphidicola] gi|21623120|gb|AAM67778.1| hypothetical 36.0 kDa protein [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 312 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 114/307 (37%), Positives = 182/307 (59%), Gaps = 17/307 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H+ V+ +++I L + +D TFG GG++ S K + A+DRDP +V G + Sbjct: 7 HISVMKKELIESLKIKKNGIYIDGTFGMGGHALSILKTIGREGRLYAIDRDPNSVFIGNQ 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 ++D ++F + + FS++ +Y V+G++FDLG SS+QI+ RGFSF+K+GP Sbjct: 67 -IKD--KRFHIIHSNFSKILNYAKYNNIIGKVNGILFDLGTSSLQIENEKRGFSFKKNGP 123 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ +GISAS+ + ++++ + +L GEE+ + RIA+AI + T +L Sbjct: 124 LDMRMNPHAGISASEWLFKSDINKIYFVLKNFGEERFSKRIAYAIKDYCKKKKINNTFEL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+K KN HPA R+FQA+RI++N E+EE+ +GL ++ K LK GG L ++SFH Sbjct: 184 VDIIKKATPI-KNKFKHPAKRTFQAIRIYINQELEEIKKGLENSLKILKPGGRLSIISFH 242 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVV----PTQEDVAFNRRSR 307 SLEDR+VK F S K V + +P + I K ++ PTQ+++ N R+R Sbjct: 243 SLEDRIVKNFMMKYSKKA-TVPYGLPITENKLETLRICKLKIINRIFPTQKEIEKNPRAR 301 Query: 308 SAKLRAG 314 S+ LR Sbjct: 302 SSVLRTA 308 >gi|325847850|ref|ZP_08170072.1| S-adenosyl-methyltransferase MraW [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480868|gb|EGC83921.1| S-adenosyl-methyltransferase MraW [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 306 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 118/307 (38%), Positives = 165/307 (53%), Gaps = 14/307 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H VLL + I LN + D T G GG+S+ K S ++ LD+D A+ +E Sbjct: 5 HKSVLLNETIKNLNIKEDGIYADLTLGKGGHSKEILKNLSPEGLLVGLDQDKDAIKAAKE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 ++D+ F F ++ D V DK +DG + D+GVSS QID GDRGFS+ K GP Sbjct: 65 NLKDFSNVL-YFNENFEKISD-VLDKASLKMIDGALMDIGVSSYQIDNGDRGFSYMKDGP 122 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ ++A +VN ++ +L I GEE+ + IA AIV R+ TT L Sbjct: 123 LDMRMNKDNELTAKQIVNDYSLDELWEIFSKYGEERYSKTIAKAIVDYRKLHEINTTLQL 182 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +++ K+V N HP R FQALRI VN E+E L L L GG L V++FH Sbjct: 183 RNIVMKSVV---TNEAHPEKRVFQALRIEVNRELEVLENTLEKIVDRLNKGGRLCVITFH 239 Query: 252 SLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK F S K + + H + I+KK ++P+++++ NRRS SAK Sbjct: 240 SLEDRIVKNKFKEMSKKCICPPEFPVCVCNHEKKVKIISKKPILPSKDELKTNRRSHSAK 299 Query: 311 LRAGMRT 317 LR R Sbjct: 300 LRVCERV 306 >gi|256846968|ref|ZP_05552414.1| MraW methylase [Lactobacillus coleohominis 101-4-CHN] gi|256715632|gb|EEU30607.1| MraW methylase [Lactobacillus coleohominis 101-4-CHN] Length = 313 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 121/305 (39%), Positives = 172/305 (56%), Gaps = 12/305 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQE 76 DHV VLL + +A LN P +DAT G GG+S G ++ A D+D A+ QE Sbjct: 4 DHVTVLLHEAVAGLNVQPDGQYVDATLGGGGHSGLILSKLHGGHLYAFDQDRTAIEYNQE 63 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + DY + Q + + F LQ + GV DG+V+DLGVSS Q D G RGFS+Q Sbjct: 64 HLADYLARHQLTFIKDNFKNLQVDLNKLGVTKVDGIVYDLGVSSPQFDDGQRGFSYQHDA 123 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM+ +SA ++VNQ L +IL GEEK A IA AI + R+ P TT + Sbjct: 124 KLDMRMNQEQSLSAYEIVNQWPYDRLVKILYRYGEEKFAKSIARAIERHREERPITTTFE 183 Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I++ + ++ + HPA ++FQA+RI VN+E+ L L A + L GG + V++ Sbjct: 184 LVDVIKEAIPARARRHGGHPAKKTFQAIRIAVNDELGVLEASLEQAFEMLNVGGRISVIT 243 Query: 250 FHSLEDRLVKKFFASRS--GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 F SLEDRLVK F R+ V A +IP P F+ + +K + P+ +++A N R+ Sbjct: 244 FQSLEDRLVKTMFRERTTLKDVPAGLPVIPKEQQPD-FKLVNRKAIEPSPQELASNHRAH 302 Query: 308 SAKLR 312 SA LR Sbjct: 303 SAHLR 307 >gi|56750578|ref|YP_171279.1| S-adenosyl-methyltransferase MraW [Synechococcus elongatus PCC 6301] gi|81299784|ref|YP_399992.1| S-adenosyl-methyltransferase MraW [Synechococcus elongatus PCC 7942] gi|68565438|sp|Q5N4L0|RSMH_SYNP6 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|123557084|sp|Q31PL4|RSMH_SYNE7 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|56685537|dbj|BAD78759.1| hypothetical protein [Synechococcus elongatus PCC 6301] gi|81168665|gb|ABB57005.1| methyltransferase [Synechococcus elongatus PCC 7942] Length = 296 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 121/307 (39%), Positives = 173/307 (56%), Gaps = 28/307 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 HV VL +++ L P G LDAT G GG+S N VI LDRDP A++ Q Sbjct: 13 HVTVLQRELVEGLLPDRGGWFLDATLGGGGHSELLLSEWPNTQVIGLDRDPAAIAASQTR 72 Query: 78 MRDYKEQFSLFQATFSQLQDYVP-DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 ++ Y ++ F+ +Y P D+ G++ DLGVSS Q+D +RGFSF++ PLDMR Sbjct: 73 LQLYSDRVQFQHVNFA---NYQPGDRRFQGIMADLGVSSPQLDEAERGFSFRQDAPLDMR 129 Query: 137 MSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M + ++A+ +VN+ + DL ++ GEE+ + RIA IV++R PF+ T +LS I Sbjct: 130 MDPTAELTAAAIVNEWDETDLANLIYQYGEERLSRRIARRIVEQR---PFERTLELSEAI 186 Query: 196 QKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 V S + RIHPATR+FQALRI VN E++ L L A L GG + ++SFHSLE Sbjct: 187 AGAVPRSYRYGRIHPATRTFQALRIAVNGELDALQTFLDRAPDWLAPGGRIALISFHSLE 246 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 DR++K A R + V IT+K ++P++ ++ N RSRSAKLR Sbjct: 247 DRIIKH--ALRGDDRLTV---------------ITRKPLLPSEAEIESNPRSRSAKLRIA 289 Query: 315 MRTVERS 321 R + S Sbjct: 290 ERVLPES 296 >gi|187932019|ref|YP_001892004.1| S-adenosyl-methyltransferase MraW [Francisella tularensis subsp. mediasiatica FSC147] gi|263447507|sp|B2SDL2|RSMH_FRATM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|187712928|gb|ACD31225.1| S-adenosyl-methyltransferase MraW [Francisella tularensis subsp. mediasiatica FSC147] Length = 305 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 121/307 (39%), Positives = 182/307 (59%), Gaps = 22/307 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77 H VLL++ I LN P + +DATFG GG+S++ +IA D+D A+S +E Sbjct: 2 HYSVLLQESINDLNINPQGIYIDATFGRGGHSKAILNRLTTGRLIAFDKDLDAISYAREN 61 Query: 78 MRDYKEQFSLFQ---ATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 QFS F+ A+F+ + DY +DG++ DLGVSS Q+D RGFSF + Sbjct: 62 F-----QFSNFEIVHASFASIYDYCLQHSLLGKIDGIIMDLGVSSPQLDNAARGFSFTHN 116 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTT 188 GPLDMRM S GI+AS + + +V DL+ I + GEE+ A +IA I +Q+ +TT Sbjct: 117 GPLDMRMDVSKGITASQALEELSVDDLSYIFKVYGEERFAKKIALRIKDYIQQNGSIRTT 176 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ LI+ T+ K + +PATR FQALRI+VNNE+++L L + +K+GG + + Sbjct: 177 LELAELIRATI--GKKEKKNPATRCFQALRIYVNNELKDLEALLENILAVIKSGGRIAAI 234 Query: 249 SFHSLEDRLVKKFFASR---SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 SFHSLEDR+VK+ F++ ++ + M+P ++ + ITKK ++++ N R Sbjct: 235 SFHSLEDRIVKQKFSALINPKQELNRITKMLPQDSSQIKLKWITKK-SKANEDELNQNVR 293 Query: 306 SRSAKLR 312 SRSA LR Sbjct: 294 SRSAILR 300 >gi|226323690|ref|ZP_03799208.1| hypothetical protein COPCOM_01465 [Coprococcus comes ATCC 27758] gi|225207874|gb|EEG90228.1| hypothetical protein COPCOM_01465 [Coprococcus comes ATCC 27758] Length = 311 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 114/308 (37%), Positives = 172/308 (55%), Gaps = 21/308 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H VLL++ I LN P + +D T G GG++ C+ +N I +D+D A+ Sbjct: 5 HKSVLLDETIEGLNIKPDGIYVDGTLGGGGHAYEVCRRLNNKGSFIGIDQDAAAIEAAGT 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + D+ E+ ++ ++ + ++ + +KG VDG+V DLGVSS Q+D DRGFS++ PL Sbjct: 65 RLSDFGERVTIIRSNYCDMKSRLHEKGIDKVDGIVLDLGVSSYQLDTADRGFSYRVDAPL 124 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM +SA ++VN + DL RI+ GE+K A IA IV R+ P +TT L+ Sbjct: 125 DMRMDTRQTLSAKEIVNGYSEMDLFRIIRDYGEDKFAKNIAKHIVMAREKGPIETTGQLA 184 Query: 193 SLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I++++ F K + HPA R+FQA+RI N E+E L L L GG + +++F Sbjct: 185 EIIRQSIPMKFQKMSG-HPAKRTFQAIRIECNRELEVLRDSLDDMIDILNPGGRICIITF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF------QSITKKVVVPTQEDVAFNR 304 HSLEDR+VK F PS V + ITKK ++P++E++ N Sbjct: 244 HSLEDRIVKGIFKKNENPCTC-----PSTFPVCVCGKVSKGKVITKKPILPSEEEMEVNS 298 Query: 305 RSRSAKLR 312 RS+SAKLR Sbjct: 299 RSKSAKLR 306 >gi|323489493|ref|ZP_08094720.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Planococcus donghaensis MPA1U2] gi|323396624|gb|EGA89443.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Planococcus donghaensis MPA1U2] Length = 312 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 115/311 (36%), Positives = 174/311 (55%), Gaps = 11/311 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 +H VLL + + LN P + +D T G G+S + S+ + D+D A++ + Sbjct: 3 NHTTVLLHETVDGLNVRPDGIYVDCTLGGAGHSEYLVQQLSDQGHLYCFDQDATAIAHAK 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E +++Y + + A F L++ + GV DG+++DLGVSS Q+D +RGFS+ P Sbjct: 63 EKLQEYLHRITFIHANFKFLKEELEMHGVEKVDGILYDLGVSSPQLDTPERGFSYHNDAP 122 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S +SA VVN+ + +DL RI GEEK + +IA I R+ P +TT L Sbjct: 123 LDMRMDQSAELSAYHVVNEWSFEDLVRIFYRYGEEKFSKQIARKIEAAREKQPIETTGQL 182 Query: 192 SSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 I+ + F++ HPA R FQA+RI VN+E+ L+ A L GG + V++F Sbjct: 183 VECIKDGIPAFARRKGGHPAKRVFQAIRIAVNDELGAAETSLQDAVSLLAIGGRISVITF 242 Query: 251 HSLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 HSLEDRL K F AS ++ +IP P + + IT+K ++P++E++ N RSRS Sbjct: 243 HSLEDRLCKAIFKEASSLPELPPNLPVIPDGMEP-ILKLITRKPILPSEEELEHNNRSRS 301 Query: 309 AKLRAGMRTVE 319 AKLR + E Sbjct: 302 AKLRIAEKINE 312 >gi|326771704|ref|ZP_08230989.1| S-adenosyl-methyltransferase MraW [Actinomyces viscosus C505] gi|326637837|gb|EGE38738.1| S-adenosyl-methyltransferase MraW [Actinomyces viscosus C505] Length = 375 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 123/328 (37%), Positives = 189/328 (57%), Gaps = 32/328 (9%) Query: 17 IGDHVPVLLEKVIALLNPA-------------PGKVILDATFGAGGYSRSFCKMGSN--V 61 +G H PVLLE+ + LL PA V++D T G GG++ + + + V Sbjct: 14 VGRHKPVLLERCLDLLAPAIEGAAGSAAAPGPAQPVMIDCTLGMGGHTEAALERFATLKV 73 Query: 62 IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL-----QDYVPDKG-VDGVVFDLGVSS 115 + +DRDP A++ + + ++F QAT+ + + V +G VD V+ DLGVSS Sbjct: 74 VGIDRDPEAIALASARLARFGDRFVAVQATYDAVSRVAREHSVRAEGTVDAVLMDLGVSS 133 Query: 116 MQIDCGDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAH 174 +Q+D RGFS+ + PLDMRM SG++A D++ A+ +LTRIL GEE+ ASRIA Sbjct: 134 LQLDEASRGFSYARPAPLDMRMDQGSGMTAQDLLEHADAAELTRILRTYGEERFASRIAA 193 Query: 175 AIVKRRQSA-PFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGL 232 AIV+RR+S P +TQDL+ L++++V ++ + HPA R+FQALRI VN E++ L + + Sbjct: 194 AIVRRRESGDPVASTQDLAELVRQSVPAPARRSGGHPAKRTFQALRIAVNAELDVLERAV 253 Query: 233 RSAEKALKAGGLLIVVSFHSLEDRLVKKFFA----SRSGKVMAVRHMIPSNAHPAVFQSI 288 A +L+ GG L+V S+ SLEDR+VK+ A SR+ + + V +P P + + Sbjct: 254 PRALNSLRVGGRLVVESYQSLEDRIVKRALAHGATSRAPQDLPV---VPEVDRP-YLELL 309 Query: 289 TKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 T ++ N RS +LRA +R Sbjct: 310 TNGAEKADARELDHNPRSAPVRLRAAVR 337 >gi|322513875|ref|ZP_08066954.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Actinobacillus ureae ATCC 25976] gi|322120274|gb|EFX92221.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Actinobacillus ureae ATCC 25976] Length = 313 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 121/313 (38%), Positives = 178/313 (56%), Gaps = 18/313 (5%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPF 69 ++ T H+ VLL + + L P + +D TFG GG+SR S +IA DRDP Sbjct: 1 MNDTAHKHITVLLHEAVDGLAIKPNGIYIDGTFGRGGHSRLILSKLSERGRLIATDRDPS 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGF 125 A++ T+ D + F + FS + + G +DG++ DLGVSS Q+D +RGF Sbjct: 61 AIAEAN-TITDAR--FQIVHTAFSAIPEVCEQLGLTGKIDGILLDLGVSSPQLDDAERGF 117 Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF + G LDMRM + G+SA++ + Q +V DL +L GEE+ A RIA A+ +S Sbjct: 118 SFMRDGSLDMRMDTTKGLSAAEWLAQVSVDDLAWVLKTFGEERFAKRIAQAVFSYNKSTT 177 Query: 185 --FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 T L+ +I V F K+ HPATRSFQA+RIF+N+E++EL + L+SA L Sbjct: 178 DKISRTLQLAQIIADAVPF-KDKHKHPATRSFQAIRIFINSELDELEKALQSALSVLAPE 236 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP---SNAHPAVFQSITKKVVVPTQED 299 G L ++SFHSLEDR+VK+F ++ K M V +P S + + K ++P++ + Sbjct: 237 GRLSIISFHSLEDRMVKQFM-KKNSKGMDVPKGLPILESELNKNIPLKTIGKAIMPSEAE 295 Query: 300 VAFNRRSRSAKLR 312 + N RSRSA LR Sbjct: 296 IEANPRSRSAVLR 308 >gi|317012519|gb|ADU83127.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori Lithuania75] Length = 308 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 121/304 (39%), Positives = 182/304 (59%), Gaps = 20/304 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVSCGQET 77 H VLL++V+ P V++D T G GG+S++ K +I +D+D FA +E Sbjct: 8 HQSVLLQEVLQAFTPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFAQKIAKER 67 Query: 78 MRDYKEQFSLFQATFSQ-----LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 ++ ++ +++L F++ L+ + +K + GV+ DLGVSS+Q+D +RGF+F S Sbjct: 68 LKAFEGRYNLLSGGFAKRFKEALETH--NKEIKGVLVDLGVSSLQLDDDNRGFNFH-SHT 124 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S ++A V+N +V L +I GE K+ +IAH I +RR PF+ +DL Sbjct: 125 LDMRMDLESDLNAQKVINSYSVVALEKIFRDYGEIKEYKKIAHKIAERRAKKPFKDAKDL 184 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 S + FSKN +IHPAT FQA+RI VN+E+EEL + L+ A + LK G +L V+SFH Sbjct: 185 SDFLSS---FSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCA-RNLK-GAILCVISFH 239 Query: 252 SLEDRLVKKFFASRSGKVM---AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SLED LVK F + + + SN H A+ + +TKK + P+ E++ NRRSRS Sbjct: 240 SLEDALVKNAFKDYAKNCICDPSSFKCACSNNH-ALGEILTKKPITPSPEEIKNNRRSRS 298 Query: 309 AKLR 312 AK+R Sbjct: 299 AKMR 302 >gi|228998700|ref|ZP_04158287.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus mycoides Rock3-17] gi|229006202|ref|ZP_04163888.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus mycoides Rock1-4] gi|228755043|gb|EEM04402.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus mycoides Rock1-4] gi|228761168|gb|EEM10127.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus mycoides Rock3-17] Length = 317 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 115/307 (37%), Positives = 176/307 (57%), Gaps = 11/307 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72 T+ HV VLL++ + L+ PG +D T G GG+S G +IA D+D A+ Sbjct: 7 TMFKHVTVLLKETVDGLDIKPGGTYVDCTLGGGGHSSYLLSQLTEGGKLIAFDQDEIAIQ 66 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK 129 +E Y +QF ++ F L + + + G VDG++FDLGVSS Q+D +RGFS+ Sbjct: 67 NAKERFSSYGDQFITVKSNFRYLSEKLHELGITEVDGILFDLGVSSPQLDTPERGFSYHH 126 Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM ++A DVVN + + L RI GEEK + +I I R++ +TT Sbjct: 127 DAPLDMRMDQDAPLTAYDVVNNWSYEQLVRIFFQYGEEKFSKQITRKIEAYRENKAIETT 186 Query: 189 QDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L LI++ + ++ HPA R FQA+RI VN+E++ + L SA + +K GG + V Sbjct: 187 GELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRISV 246 Query: 248 VSFHSLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 ++FHSLEDR+ K F S + ++ +IP P + + IT+K ++P+ E++ N R Sbjct: 247 ITFHSLEDRICKTTFKRNSTTPQLPPGLPIIPDEFKPKL-KLITRKPILPSDEELEENNR 305 Query: 306 SRSAKLR 312 +RSAKLR Sbjct: 306 ARSAKLR 312 >gi|330888582|gb|EGH21243.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv. mori str. 301020] Length = 313 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 120/307 (39%), Positives = 179/307 (58%), Gaps = 20/307 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H+ VLLE+ + L LD TFG GG+SR ++G + ++ D+DP A++ GQ Sbjct: 7 HITVLLEEAVEALAVRADGCYLDGTFGRGGHSRLILSQLGPDGRLLGFDKDPQAIATGQ- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F + Q +F++L ++G V G++ DLGVSS Q+D +RGFSF GP Sbjct: 66 ALAAEDGRFVIVQRSFAELGSEAQERGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDGP 125 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G+SA++ + A +++ R+ GEE+ A R+A+A+V RR+ PF+ T DL Sbjct: 126 LDMRMDPTRGVSAAEFIATAPAEEIARVFKEYGEERFAKRMANAVVARREVQPFERTADL 185 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ K + +PATR+FQ LRI VNNE+ +L GL +A AL+ GG L+V+SFH Sbjct: 186 AEVL-KVANPAWEKGKNPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLVVISFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA------FNRR 305 SLEDR+V K F + K A +P N P F+ K+ +P + A N R Sbjct: 245 SLEDRIV-KLFMRKLAKGEA--DNMPRNL-PIQFKPFEPKIKIPGKAQFASDTETKANPR 300 Query: 306 SRSAKLR 312 SRSA +R Sbjct: 301 SRSAVMR 307 >gi|325679058|ref|ZP_08158652.1| S-adenosyl-methyltransferase MraW [Ruminococcus albus 8] gi|324109182|gb|EGC03404.1| S-adenosyl-methyltransferase MraW [Ruminococcus albus 8] Length = 319 Score = 191 bits (485), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 116/299 (38%), Positives = 166/299 (55%), Gaps = 8/299 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77 HVPVLLE+ I L+ P + D T G G+S+ K +I++DRDP AV+ E Sbjct: 5 HVPVLLEECIEGLDIKPDGIYCDGTAGGAGHSKEIAKRLTTGRLISVDRDPEAVAVATER 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + ++ + +S+L + G DG++ DLGVSS Q+D +RGFS+ PLD Sbjct: 65 LAGLPA--TVVRGNYSELDEIFERLGLSGADGILMDLGVSSYQLDNAERGFSYHADAPLD 122 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRMS G+SA DVVN + K L RI+ GEEK + IA IV+ RQ P +TT +L+ + Sbjct: 123 MRMSSEGLSARDVVNGYDEKTLARIIFEYGEEKYSRSIARRIVEARQVRPIETTLELAEI 182 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 I+ V +P ++FQA+RI VN E+E L+ L A L GG L +++FHSLE Sbjct: 183 IKTGVPQKVRREKNPCKKTFQAIRIEVNAELEHLSVALDKAFDLLNVGGRLCIITFHSLE 242 Query: 255 DRLVK-KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 DRLVK +F G V + + +T+K + PT+ + N+R+ SAKLR Sbjct: 243 DRLVKQRFRGFCQGCVCPPDFPVCVCGRTPRGRLVTRKPIEPTERENTENKRAHSAKLR 301 >gi|119478644|ref|ZP_01618547.1| S-adenosyl-methyltransferase [marine gamma proteobacterium HTCC2143] gi|119448421|gb|EAW29672.1| S-adenosyl-methyltransferase [marine gamma proteobacterium HTCC2143] Length = 291 Score = 191 bits (485), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 113/296 (38%), Positives = 175/296 (59%), Gaps = 33/296 (11%) Query: 36 PGKVILDATFGAGGYSRSFCK----MGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91 P V +D TFG GG+SR MG +++ +D+DP A++ G E + E+F + + Sbjct: 4 PAGVYVDGTFGRGGHSRRILTKLDAMG-HLLGIDKDPQAIATGNE-LAVIDERFEIVHGS 61 Query: 92 FSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDV 147 F++ + + +G+DGV+ DLGVSS Q+D RGFSF + GPLDMRM+ +G+SA++ Sbjct: 62 FAETLELIRLRWPQGIDGVLLDLGVSSPQLDQSQRGFSFLRDGPLDMRMNTDAGMSAAEW 121 Query: 148 VNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRI 207 V A ++ R+L GEE+ A R+A AI+K R ++P +TT L+ ++ + + + Sbjct: 122 VATATESEIARVLKEFGEERFAKRMARAIIKERMASPIETTLHLAKVVAEAHPAWERGK- 180 Query: 208 HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSG 267 HPAT++FQA+RI++NNE+ +L Q L A L GG L+V+SFHSLEDR+VK+F Sbjct: 181 HPATKAFQAIRIYINNELGDLRQFLDQALDVLNIGGRLVVISFHSLEDRMVKRF------ 234 Query: 268 KVMAVRH-----MIPSNAHPAVFQSITK------KVVVPTQEDVAFNRRSRSAKLR 312 +RH +P+N P + + K V + E++ N RSRSA +R Sbjct: 235 ----IRHHVRGDQLPANL-PVTVDQLNRRLRQVGKAVKASAEEIDGNSRSRSAIMR 285 >gi|308185651|ref|YP_003929782.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Pantoea vagans C9-1] gi|308056161|gb|ADO08333.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Pantoea vagans C9-1] Length = 313 Score = 191 bits (485), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 125/312 (40%), Positives = 182/312 (58%), Gaps = 21/312 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + LN + +D TFG GG+SR ++G +IA+DRDP A++ E Sbjct: 7 HTTVLLDEAVNGLNIREDGIYIDGTFGRGGHSRLILSQLGEKGRLIAIDRDPQAIAAAAE 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +FS+ FS L +YV ++ +DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 67 IT---DPRFSIIHGPFSALAEYVAERDLVGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G SA++ + A D+ +L GEE+ + RIA AIV+R + P T++L Sbjct: 124 LDMRMDPSRGHSAAEWLLHAEEADIAFVLKTYGEERFSKRIARAIVERNREQPMTRTREL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +I + K+ HPATRSFQA+RI++N+E+EE+ L+ A + L G L V+SFH Sbjct: 184 AEVISVAMPV-KDKFKHPATRSFQAIRIWINSELEEIDIALKGAVEVLAPQGRLSVISFH 242 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHP--AVFQSITKKV--VVPTQEDVAFNRR 305 SLEDRLVK+F SR +V A IP H A+ K + + P +V+ N R Sbjct: 243 SLEDRLVKRFMRDQSRGPQVPA---GIPMTEHQLRALGGRELKLLGKMSPGDAEVSENPR 299 Query: 306 SRSAKLRAGMRT 317 +RS+ LR +T Sbjct: 300 ARSSVLRIAEKT 311 >gi|145635580|ref|ZP_01791278.1| S-adenosyl-methyltransferase [Haemophilus influenzae PittAA] gi|229844915|ref|ZP_04465053.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae 6P18H1] gi|145267142|gb|EDK07148.1| S-adenosyl-methyltransferase [Haemophilus influenzae PittAA] gi|229812296|gb|EEP47987.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae 6P18H1] Length = 320 Score = 191 bits (485), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 128/317 (40%), Positives = 178/317 (56%), Gaps = 29/317 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H+ VLL + + L + +D TFG GG+SR SN +IA+DRDP A++ E Sbjct: 12 HITVLLHEAVNGLALKENGIYIDGTFGRGGHSRFILSQLSNGRLIAVDRDPRAIA---EA 68 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F + +FS + + + DK +DG++ DLGVSS Q+D +RGFSF K GP Sbjct: 69 HKIQDSRFQIEHNSFSHIPE-ICDKLNLVGKIDGILLDLGVSSPQLDEAERGFSFMKDGP 127 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP------F 185 LDMRM + G+SA + + Q +++DLT +L GEE+ A RIA AIV +SA Sbjct: 128 LDMRMDTTQGLSAEEWLKQVSIEDLTWVLKTFGEERFAKRIATAIVDFNKSAVKNGTEFL 187 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 T L+ LI + V F K+ HPATRSFQA+RIF+N+E++EL L SA L G L Sbjct: 188 SRTSQLAELISQAVPF-KDKHKHPATRSFQAIRIFINSELDELESLLNSALDMLAPEGRL 246 Query: 246 IVVSFHSLEDRLVKKFFASRSG-----KVMAVRH-MIPSNAHPAVFQSITKKVVVPTQED 299 ++SFHSLEDR+VK F +S K + +R I N I K + P+ + Sbjct: 247 SIISFHSLEDRMVKHFMKKQSKGEDIPKGLPLREDQIQRNQK----LRIIGKAIQPSDAE 302 Query: 300 VAFNRRSRSAKLRAGMR 316 + N RSRSA LR R Sbjct: 303 IQANPRSRSAILRVAER 319 >gi|239618274|ref|YP_002941596.1| S-adenosyl-methyltransferase MraW [Kosmotoga olearia TBF 19.5.1] gi|263456220|sp|C5CGS3|RSMH_KOSOT RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|239507105|gb|ACR80592.1| S-adenosyl-methyltransferase MraW [Kosmotoga olearia TBF 19.5.1] Length = 298 Score = 191 bits (485), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 120/308 (38%), Positives = 175/308 (56%), Gaps = 30/308 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H V++++ + L P V +D T G GG++++ + S VI LD D ++ ++ Sbjct: 9 HRSVMVQETLHYLRPTYNGVYVDGTLGEGGHTKAIIEATSGKCKVIGLDIDEEVLAIAEQ 68 Query: 77 TMRDYKEQFSLFQATFSQ----LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 ++++KE LF ++ L+ DK VDG + D+GVS+ Q+ RGFS++ P Sbjct: 69 NLKEFKENVELFNVSYVDFDLVLESLAVDK-VDGFLLDIGVSTYQLKAKGRGFSYEIDEP 127 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQ-ASRIAHAIVKRRQSAPFQTTQD 190 LDMRMS SG ++A+DVVN K+L RI+ GEEK+ A RIA IV+RR P QTT Sbjct: 128 LDMRMSLSGSVTAADVVNSYPEKELARIIFEYGEEKRYARRIARKIVERR---PIQTTIQ 184 Query: 191 LSSLIQKTVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L I+ + + R H ATR+FQA+RI VN E++ L L LK GG ++++ Sbjct: 185 LVEAIKAALPPQERFRRKRHYATRTFQAIRIEVNGELKGLRTALEKFPNYLKPGGRIVII 244 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDR VK FF + G + + +T+K VVP+ E+V+ N R+RS Sbjct: 245 SFHSLEDRTVKHFFREQDGVTLKI---------------LTRKPVVPSVEEVSENPRARS 289 Query: 309 AKLRAGMR 316 AKLRA R Sbjct: 290 AKLRAAER 297 >gi|217967641|ref|YP_002353147.1| S-adenosyl-methyltransferase MraW [Dictyoglomus turgidum DSM 6724] gi|263446377|sp|B8E088|RSMH_DICTD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|217336740|gb|ACK42533.1| S-adenosyl-methyltransferase MraW [Dictyoglomus turgidum DSM 6724] Length = 295 Score = 191 bits (485), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 110/305 (36%), Positives = 174/305 (57%), Gaps = 27/305 (8%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H PV+L++VI L +PGK+++DAT G GG+S + +I +DRD ++ +E Sbjct: 8 HKPVMLKEVIHYLKLSPGKIVVDATLGLGGHSSEILRELKGEGLLIGIDRDEEVLNLARE 67 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK-SGP 132 +R F LF T+ ++Q+ + + +D ++FDLG SS I+ +RGFSF + P Sbjct: 68 RLRKIANNFVLFNTTYDKVQEILKELKLSFIDAILFDLGFSSFHIEKSERGFSFMRPEEP 127 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMR S + ++A+D++N N +L+ + GEE + ++A IV+RR+ F +DL Sbjct: 128 LDMRYSKDTTLTAADILNSFNELELSNLFWEYGEEPLSRKLAKKIVERRKEKKFVYVKDL 187 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++++ + K R H AT+ FQALRI VN+E+ L + L L G ++V+++H Sbjct: 188 LEVVEEVI--PKRKR-HEATKVFQALRIVVNDEVNILKRALDQIPFILAPRGRIVVLTYH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 S+EDR+VK FF S S K+ V KKV+ P+ ++ NRR+RSAKL Sbjct: 245 SIEDRVVKNFFKSHSDKIFPV----------------NKKVIRPSVNEIRENRRARSAKL 288 Query: 312 RAGMR 316 R G R Sbjct: 289 RVGER 293 >gi|299534665|ref|ZP_07047997.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Lysinibacillus fusiformis ZC1] gi|298730038|gb|EFI70581.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Lysinibacillus fusiformis ZC1] Length = 316 Score = 191 bits (485), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 116/304 (38%), Positives = 174/304 (57%), Gaps = 11/304 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 DH VLL++ + LN P V +D T G G+S + S+ +I D+D A+ + Sbjct: 3 DHTTVLLKETVDGLNIDPDGVYVDCTLGGAGHSEYLVQQLSDKGRLICFDQDMTAIENAK 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + Y E+ + + F L++ + G VDG+++DLGVSS Q+D +RGFS+ P Sbjct: 63 IRLAPYIERVTFIHSNFRYLKEELLAHGIKQVDGILYDLGVSSPQLDTPERGFSYHHDAP 122 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + ++ASDVVNQ +DL RI GEEK + ++A I + R+ AP +TT L Sbjct: 123 LDMRMDQTATLTASDVVNQWAYEDLVRIFFRYGEEKFSKQVARKIEEARKIAPIETTGQL 182 Query: 192 SSLIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 LI++ + + + HPA R FQA+RI VN+E+ L A + GG + V++F Sbjct: 183 VELIKEGIPAAARRKGGHPAKRIFQAIRIAVNDELGAAEDSLVDAIDMINVGGRISVITF 242 Query: 251 HSLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 HSLEDRL K F AS ++ +IP + P + IT+K ++P+ E++A N R+RS Sbjct: 243 HSLEDRLCKTIFKEASSLPELPPNLPVIPDDMKPT-LKLITRKPIIPSDEELAVNNRARS 301 Query: 309 AKLR 312 AKLR Sbjct: 302 AKLR 305 >gi|323699047|ref|ZP_08110959.1| S-adenosyl-methyltransferase MraW [Desulfovibrio sp. ND132] gi|323458979|gb|EGB14844.1| S-adenosyl-methyltransferase MraW [Desulfovibrio desulfuricans ND132] Length = 326 Score = 191 bits (485), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 120/309 (38%), Positives = 169/309 (54%), Gaps = 14/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VLL +V+ L P PG +D T G GG+S + + G+ ++ LDRD A++ Sbjct: 12 HTTVLLHEVVRWLQPRPGGRYMDGTLGMGGHSLALLEAAGEGAELVGLDRDQEALALATR 71 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + + LF FS+ ++ + + G +DG V DLGVSS+Q+D DRGFSF GPL Sbjct: 72 RLEPFAGRVHLFHLPFSRFEEALDEVGWERIDGAVLDLGVSSLQLDEADRGFSFIHDGPL 131 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM SG SA ++VN +L RI+ + GE+ A +IA AIV+ R+ T L+ Sbjct: 132 DMRMDPDSGPSAEELVNTLKHGELARIIRVYGEDPLAGKIASAIVREREKGAITRTLQLA 191 Query: 193 SLIQKTVYFSK---NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 ++ + Y K R HPATR+FQ LRI VN E EEL L + LK G L ++S Sbjct: 192 EIV-RLAYPPKMRHTARNHPATRTFQGLRIAVNRETEELEHYLATIVGRLKPGARLAIIS 250 Query: 250 FHSLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 FHSLEDR VK F A++ K + P + + +T+K V + + N R+R Sbjct: 251 FHSLEDRAVKHAFRDAAKGCKCPPHQLHCTCGGVPEM-KVLTRKPVAASDAERDANPRAR 309 Query: 308 SAKLRAGMR 316 SAKLR R Sbjct: 310 SAKLRVAER 318 >gi|260220007|emb|CBA27114.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Curvibacter putative symbiont of Hydra magnipapillata] Length = 311 Score = 191 bits (485), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 128/310 (41%), Positives = 171/310 (55%), Gaps = 21/310 (6%) Query: 20 HVPVLLEKVIALL--------NPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDP 68 H VLL + + L + A +DATFG GG+SRS +IA DRDP Sbjct: 7 HTTVLLNEAVDALFSDGGTPFDAASLATYVDATFGRGGHSRSILSRLDASGRLIAFDRDP 66 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 AV+ + +FS+ FS L +P V GV+ DLGVSS QID +RGFSF+ Sbjct: 67 EAVA---QAALITDPRFSIRHEGFSNL-GVLPSGSVGGVLMDLGVSSPQIDSPERGFSFR 122 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQ 186 GPLDMRM + G S + + A + + ++ GEE+ A IA AIV RRQ P Sbjct: 123 FEGPLDMRMDTTRGESVAQWLETAEINQIAEVIREYGEERFAGSIAKAIVARRQERGPIS 182 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 TT +L+ L+ TV + + +PATR+FQA RIF+N E+EEL Q L ++ + L+ GG L Sbjct: 183 TTSELAQLVADTVKTREPGQ-NPATRTFQAFRIFINAELEELQQALDASLEVLQPGGRLA 241 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+SFHSLEDR+VK+F A S + R A P V + + P+ E+VA N RS Sbjct: 242 VISFHSLEDRIVKQFIAKHSKEEYDRRAPF---AAPKVMKLKALGRIKPSAEEVAANPRS 298 Query: 307 RSAKLRAGMR 316 RSA LR R Sbjct: 299 RSAILRVAQR 308 >gi|288939887|ref|YP_003442127.1| S-adenosyl-methyltransferase MraW [Allochromatium vinosum DSM 180] gi|288895259|gb|ADC61095.1| S-adenosyl-methyltransferase MraW [Allochromatium vinosum DSM 180] Length = 339 Score = 191 bits (485), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 124/308 (40%), Positives = 178/308 (57%), Gaps = 16/308 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGS--NVIALDRDPFAVSCGQE 76 H PVLLE+ ++ L + +D TFG GG+SR+ ++G+ ++ DRDP AV+ G+ Sbjct: 35 HKPVLLEESVSALLVQSDGIYVDGTFGRGGHSRAILARLGAAGRLLGFDRDPEAVAVGR- 93 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVD----GVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +FS+ Q +F+ + + + GVD G++ DLGVSS Q+D +RGFSF GP Sbjct: 94 ALAAQDPRFSIHQGSFADIGRLLDEAGVDARLNGLLLDLGVSSPQLDTPERGFSFMAEGP 153 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM SG SA+ + +A ++ +L GEE+ A+RIA AIV+ R P +TT L Sbjct: 154 LDMRMDPDSGESAAQWLARAEQGEIATVLHEFGEERFANRIARAIVETRTQTPIRTTAQL 213 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + L+ + V + + HPATR+FQA+RI VN E+E L + L L GG L V+SFH Sbjct: 214 AELVARAVPRREPGK-HPATRTFQAVRIQVNGELEALRRCLDQVCDRLAVGGRLAVISFH 272 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV---VVPTQEDVAFNRRSRS 308 SLEDRLVK+F R K + +P+ A Q + V V P+ + A N R+RS Sbjct: 273 SLEDRLVKRFI-RREAKGPELPKGVPARA--VEVQGRLRPVGKSVRPSTAEEALNPRARS 329 Query: 309 AKLRAGMR 316 A LR R Sbjct: 330 AILRVAER 337 >gi|224826070|ref|ZP_03699173.1| S-adenosyl-methyltransferase MraW [Lutiella nitroferrum 2002] gi|224601707|gb|EEG07887.1| S-adenosyl-methyltransferase MraW [Lutiella nitroferrum 2002] Length = 320 Score = 191 bits (485), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 125/307 (40%), Positives = 178/307 (57%), Gaps = 12/307 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMG--SNVIALDRDPFAVSCGQE 76 H+ VLL + +A L P V +D TFG GG+SR ++G ++A D+DP A++ G E Sbjct: 8 HLTVLLSEAVAALAVRPDGVYVDCTFGRGGHSRLILSQLGPAGRLVAFDKDPEAIAAG-E 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + +F+L F L + G VDGV+ DLGVSS QID RGFSF+ PL Sbjct: 67 RLAAEDPRFTLVHEGFETLARELDRLGIARVDGVLMDLGVSSPQIDDARRGFSFRFDAPL 126 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S G++A++ + A +D+ ++ GEE+ A +IA AIV +R+ AP +TT+ L+ Sbjct: 127 DMRMDTSRGLTAAEWLATAAEEDIREVIKTYGEERFARKIAAAIVAQRELAPLETTRQLA 186 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 L+ + V + + PATR+FQA+RI++N E+EEL L A + L GG L V+SFHS Sbjct: 187 QLVGQNVRTREPGQ-DPATRTFQAIRIYINRELEELKAVLPQAAQRLAEGGRLAVISFHS 245 Query: 253 LEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 LEDR+VK F AS K+ + M+ S P K V + ++V N RSRSA Sbjct: 246 LEDRIVKNFMRDASSDAKLPSW-VMVRSADLPEPPLRTVGKPVRASDDEVNGNPRSRSAI 304 Query: 311 LRAGMRT 317 +R RT Sbjct: 305 MRIAERT 311 >gi|89256825|ref|YP_514187.1| S-adenosyl-methyltransferase MraW [Francisella tularensis subsp. holarctica LVS] gi|115315211|ref|YP_763934.1| S-adenosyl-methyltransferase [Francisella tularensis subsp. holarctica OSU18] gi|167009864|ref|ZP_02274795.1| S-adenosyl-methyltransferase [Francisella tularensis subsp. holarctica FSC200] gi|169656696|ref|YP_001429056.2| S-adenosyl-methyltransferase MraW [Francisella tularensis subsp. holarctica FTNF002-00] gi|254368107|ref|ZP_04984127.1| S-adenosyl-methyltransferase [Francisella tularensis subsp. holarctica 257] gi|254369709|ref|ZP_04985719.1| S-adenosyl-methyltransferase [Francisella tularensis subsp. holarctica FSC022] gi|290953521|ref|ZP_06558142.1| S-adenosyl-methyltransferase MraW [Francisella tularensis subsp. holarctica URFT1] gi|295313213|ref|ZP_06803872.1| S-adenosyl-methyltransferase MraW [Francisella tularensis subsp. holarctica URFT1] gi|122324792|sp|Q0BKT7|RSMH_FRATO RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|122500397|sp|Q2A265|RSMH_FRATH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263447878|sp|A7NDP7|RSMH_FRATF RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|89144656|emb|CAJ79980.1| S-adenosyl-methyltransferase [Francisella tularensis subsp. holarctica LVS] gi|115130110|gb|ABI83297.1| S-adenosyl-methyltransferase [Francisella tularensis subsp. holarctica OSU18] gi|134253917|gb|EBA53011.1| S-adenosyl-methyltransferase [Francisella tularensis subsp. holarctica 257] gi|157122668|gb|EDO66797.1| S-adenosyl-methyltransferase [Francisella tularensis subsp. holarctica FSC022] gi|164551764|gb|ABU62100.2| S-adenosyl-methyltransferase MraW [Francisella tularensis subsp. holarctica FTNF002-00] Length = 305 Score = 191 bits (485), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 121/307 (39%), Positives = 182/307 (59%), Gaps = 22/307 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77 H VLL++ I LN P + +DATFG GG+S++ +IA D+D A+S +E Sbjct: 2 HYSVLLQESINDLNINPQGIYIDATFGRGGHSKAILNRLTTGRLIAFDKDLDAISYAREN 61 Query: 78 MRDYKEQFSLFQ---ATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 QFS F+ A+F+ + DY +DG++ DLGVSS Q+D RGFSF + Sbjct: 62 F-----QFSNFEIVHASFASIYDYCLQHSLLGKIDGIIMDLGVSSPQLDNAARGFSFTHN 116 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTT 188 GPLDMRM S GI+AS + + +V DL+ I + GEE+ A +IA I +Q+ +TT Sbjct: 117 GPLDMRMDVSKGITASQALEELSVYDLSYIFKVYGEERFAKKIALRIKDYIQQNGSIRTT 176 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ LI+ T+ K + +PATR FQALRI+VNNE+++L L + +K+GG + + Sbjct: 177 LELAELIRATI--GKKEKKNPATRCFQALRIYVNNELKDLEALLENILAVIKSGGRIAAI 234 Query: 249 SFHSLEDRLVKKFFASR---SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 SFHSLEDR+VK+ F++ ++ + M+P ++ + ITKK ++++ N R Sbjct: 235 SFHSLEDRIVKQKFSALINPKQELNRITKMLPQDSSQIKLKWITKK-SKANEDELNQNVR 293 Query: 306 SRSAKLR 312 SRSA LR Sbjct: 294 SRSAILR 300 >gi|134102314|ref|YP_001107975.1| S-adenosyl-methyltransferase MraW [Saccharopolyspora erythraea NRRL 2338] gi|291003724|ref|ZP_06561697.1| S-adenosyl-methyltransferase [Saccharopolyspora erythraea NRRL 2338] gi|262826346|sp|A4FLX5|RSMH_SACEN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|133914937|emb|CAM05050.1| S-adenosyl-methyltransferase [Saccharopolyspora erythraea NRRL 2338] Length = 330 Score = 191 bits (485), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 122/310 (39%), Positives = 179/310 (57%), Gaps = 10/310 (3%) Query: 20 HVPVLLEKVIALLNPAPGK---VILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCG 74 HVPV++E+ + LL PA K V++DAT G GG+S + + + LDRDP A+ Sbjct: 19 HVPVMMERTLELLAPALSKGPAVVVDATLGMGGHSEALLAAHPELTLVGLDRDPDALRLA 78 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E + + ++ L A + + + + VDG +FDLGVSS+Q+D DRGF++ Sbjct: 79 GERLAPHSDRVHLVHAVYDEWAEALAGLSLSKVDGALFDLGVSSLQLDETDRGFAYAHDA 138 Query: 132 PLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S + +A+DV+N + +LTR+L GEEK A+RIA AIV+ R APF + Sbjct: 139 PLDMRMDSGAPRTAADVLNTYSAGELTRVLREYGEEKFAARIAAAIVRERAKAPFDRSGR 198 Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L L+ V S+ HPA R+FQALRI VN E+E L + L +A +L GG ++V+S Sbjct: 199 LVELLYDAVPAASRRTGGHPAKRTFQALRIEVNAELEVLGRALPAALDSLAVGGRMVVMS 258 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 +HSLEDR+VK+ FA R+ V + H + +T+ + + + A N R+ S Sbjct: 259 YHSLEDRMVKRAFAERAKSKTPVDLPVELPGHGPEIRLLTRGAELASDAETAANPRAASV 318 Query: 310 KLRAGMRTVE 319 +LRA R E Sbjct: 319 RLRAAERIKE 328 >gi|330794884|ref|XP_003285506.1| hypothetical protein DICPUDRAFT_29501 [Dictyostelium purpureum] gi|325084509|gb|EGC37935.1| hypothetical protein DICPUDRAFT_29501 [Dictyostelium purpureum] Length = 372 Score = 191 bits (485), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 114/321 (35%), Positives = 184/321 (57%), Gaps = 34/321 (10%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQE 76 H PV +++V+ +L+P P V +DATFG GG+SR CK VIA DRDP ++ Sbjct: 60 HKPVFIKEVLEILDPKPNNVYIDATFGLGGHSRGILESCK-DCYVIAFDRDPNVFELTKD 118 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVD-----GVVFDLGVSSMQIDCGDRGFSFQKS- 130 YK++ + FS ++ + D ++ G++FD GVSS QID +RGFSF+K Sbjct: 119 LRTQYKDRLITIGSRFSSMKSALKDHNLENLKISGILFDYGVSSYQIDTAERGFSFKKEL 178 Query: 131 -GPLDMRMS---CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ-SAPF 185 GPLDMRM+ S +SA+D+VN + ++L I LGEEK +IAH I+++R Sbjct: 179 EGPLDMRMNNKNTSQLSAADIVNTFSEQELRDIFYHLGEEKHTRKIAHEILRKRAFGEKI 238 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 +TT L +++ + + ++ +R F++LR++VN+E+ E+ GLR A+ L G L Sbjct: 239 ETTSQLVKVVECCMPYPAASKT--ISRIFRSLRMYVNDELGEIKYGLREADDILSPGSPL 296 Query: 246 IVVSFHSLEDRLVKKFFASRSGKV--------MAVRHMIP-SNAHPAVFQSITKKVVVPT 296 + +SFHS+EDR+VK++ + K +++ +P S+ H + + P+ Sbjct: 297 LAISFHSMEDRIVKQYLNNNGLKSDYDTINNNNVIKYELPKSSKHTS--------PIFPS 348 Query: 297 QEDVAFNRRSRSAKLRAGMRT 317 E++ +N RS+SA LR +RT Sbjct: 349 DEELEWNPRSKSAILRWAVRT 369 >gi|160895291|ref|ZP_02076062.1| hypothetical protein CLOL250_02850 [Clostridium sp. L2-50] gi|156862984|gb|EDO56415.1| hypothetical protein CLOL250_02850 [Clostridium sp. L2-50] Length = 314 Score = 191 bits (485), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 109/302 (36%), Positives = 179/302 (59%), Gaps = 9/302 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76 H VLL++ I LN P V +D T G G+SR K +GS+ +I +D+D A++ +E Sbjct: 5 HTSVLLDETIENLNIKPNGVYMDGTLGGAGHSREIAKRLGSDGHLIGIDQDGEAIATAKE 64 Query: 77 TMRDYKEQFSLFQ---ATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + +Y ++ ++ + F + D + VDG++ DLGVSS Q+D DRGF+++ PL Sbjct: 65 RLAEYGDRITVVRDNYQNFKSILDELNISQVDGILLDLGVSSYQLDNADRGFTYRVDAPL 124 Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM +A D+VN ++L IL GEE+ A IA+ IVK R++ +TT++L+ Sbjct: 125 DMRMDDRQTKTAKDIVNGYTEQELFHILKEYGEERFAKSIAYHIVKYRENKEIETTEELN 184 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ ++ +N + HP+ ++FQA+RI +N+E+E L + LK GG L +++FH Sbjct: 185 DIIRGSIPAKVRNAQGHPSKQTFQAIRIELNHELEVLTNSIDGMIDCLKPGGRLCIITFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK F + + + + + + IT+K ++PT+E++ N RS+SAK Sbjct: 245 SLEDRIVKNAFRKNENPCICPPNFPVCTCGRKSKGKVITRKPILPTEEEMEINSRSKSAK 304 Query: 311 LR 312 LR Sbjct: 305 LR 306 >gi|118782145|ref|XP_312082.3| AGAP002831-PA [Anopheles gambiae str. PEST] gi|116129429|gb|EAA07716.4| AGAP002831-PA [Anopheles gambiae str. PEST] Length = 384 Score = 191 bits (485), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 126/339 (37%), Positives = 179/339 (52%), Gaps = 42/339 (12%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77 H V+ + + P +V +D TFGAGG++R+ + GS V+ALDRDP A E Sbjct: 44 HRAVMATETVKFFEPQRDQVFIDMTFGAGGHTRALLEAAPGSTVVALDRDPLAHRLACEM 103 Query: 78 MRDYKEQFSLFQATFSQLQDYVP-------DKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + FS+L + + DGV+FD G SSMQ D RGFS Sbjct: 104 AAQFPGRIVPLLGRFSELPALLRTVEGLDRQRHFDGVLFDFGCSSMQFDEAARGFSISHD 163 Query: 131 GPLDMRMS---C-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP-F 185 GPLDMRM C +SA++V+ + DL RIL + GEEKQA +IA AIV R + Sbjct: 164 GPLDMRMDRDRCPEQLSAAEVLARIQEPDLVRILKVYGEEKQAKKIARAIVNARFTVKRI 223 Query: 186 QTTQDLSSLI------------QKTVYFSKNNR---IHPATRSFQALRIFVNNEIEELAQ 230 +TT +L++++ Q T F ++ H AT++FQALRIFVNNE+ E+ Sbjct: 224 ETTAELANIVAHCLSQGESAGGQGTYDFRQDKLRRPAHVATKTFQALRIFVNNELNEINY 283 Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV------ 284 G+ A+ L+ GG L+ ++FHSLED +VK+ +A R + +H Sbjct: 284 GMVLAKHLLRTGGKLVTIAFHSLEDTIVKRHLTGHVVDDVASRVPLQYVSHTLAHETEAM 343 Query: 285 -------FQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 ++ + K V+VPT E+VA N RSRSAKLRA +R Sbjct: 344 QEMMKPHWKQMHKHVMVPTDEEVADNPRSRSAKLRAAVR 382 >gi|325676969|ref|ZP_08156641.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Rhodococcus equi ATCC 33707] gi|325552269|gb|EGD21959.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Rhodococcus equi ATCC 33707] Length = 334 Score = 191 bits (485), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 116/326 (35%), Positives = 180/326 (55%), Gaps = 30/326 (9%) Query: 20 HVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPF 69 HVPVLL + LL PA G V++DAT G GG+S F + G ++I LDRDP Sbjct: 15 HVPVLLNRADDLLGPAITADNPRGDGAVMIDATLGLGGHSEYFLRTYPGLHLIGLDRDPE 74 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD------GVVFDLGVSSMQIDCGDR 123 A+ + + Y ++ + + + + + G+D ++FDLGVSSMQ+D DR Sbjct: 75 ALRIASDRLAPYADRTTFVHTRYDGIVEALGQAGLDPVGSVHAILFDLGVSSMQLDEADR 134 Query: 124 GFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GF++ PLDMRM+ +GI+A++V+N + +L RIL GEE+ A RIA IV+RRQ Sbjct: 135 GFAYSIDAPLDMRMNPTTGITAAEVLNTYSHGELARILSTYGEERFAGRIASEIVRRRQK 194 Query: 183 APFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 PF T+ L L+ T+ ++ HPA R+FQALR+ VN E++ L + + AL Sbjct: 195 QPFTTSAALVELLYDTIPAATRRTGGHPAKRTFQALRVEVNGELDSLRDAIPAGLDALAV 254 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRS------GKVMAVRHMIPSNAHPAVFQSITKKVVVP 295 GG ++ +S+ SLEDR+VK+ A R+ G + + M P F+ +T+ Sbjct: 255 GGRVVFMSYQSLEDRVVKQELAPRAKSKTPEGLPVELPGMGPE------FKILTRGAERA 308 Query: 296 TQEDVAFNRRSRSAKLRAGMRTVERS 321 ++ ++ N R+ +LRA R ++ Sbjct: 309 SEAEIEDNPRAAPVRLRAAERIARKA 334 >gi|241765142|ref|ZP_04763130.1| S-adenosyl-methyltransferase MraW [Acidovorax delafieldii 2AN] gi|241365221|gb|EER60068.1| S-adenosyl-methyltransferase MraW [Acidovorax delafieldii 2AN] Length = 309 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 119/282 (42%), Positives = 167/282 (59%), Gaps = 13/282 (4%) Query: 41 LDATFGAGGYSRS-FCKMG--SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD 97 +DATFG GG+SR ++G +++A D+DP A+ E R +FS+ F L + Sbjct: 32 VDATFGRGGHSRRILLRLGPQGHLVAFDKDPEAI---HEATRITDARFSIRHEGFRHLAE 88 Query: 98 YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDL 156 +P V GV+ DLGVSS QID RGFSF+ GPLDMRM + G S + + A V+ + Sbjct: 89 -LPAGSVAGVLMDLGVSSPQIDSPGRGFSFRFDGPLDMRMDTTRGESVAQWLATAEVQQI 147 Query: 157 TRILGILGEEKQASRIAHAIVKRRQS-APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQ 215 ++ GEE+ A IA AIV RR+ P TT +L+ L+ V + + +PATR+FQ Sbjct: 148 AEVIRDYGEERFAGPIAKAIVARREERGPLATTAELADLVAGAVKTREPGQ-NPATRTFQ 206 Query: 216 ALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM 275 ALRIF+N E+EEL Q L ++ L+ GG L+V+SFHSLEDR+VK+F A S +V R Sbjct: 207 ALRIFINAELEELQQALEASLSVLQPGGRLVVISFHSLEDRIVKQFIAQHSKEVYDRRAP 266 Query: 276 IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 A P V + + + P+ +VA N R+RSA +R RT Sbjct: 267 F---APPKVMKLVALDRIKPSAAEVAANPRARSAIMRVAERT 305 >gi|210622330|ref|ZP_03293099.1| hypothetical protein CLOHIR_01047 [Clostridium hiranonis DSM 13275] gi|210154318|gb|EEA85324.1| hypothetical protein CLOHIR_01047 [Clostridium hiranonis DSM 13275] Length = 311 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 115/309 (37%), Positives = 173/309 (55%), Gaps = 13/309 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 +HV VLL + I LN P V +D T G G+S+ K S+ I D+D A++ + Sbjct: 4 NHVSVLLNECIDNLNIKPDGVYVDCTMGGAGHSKEIVKRLSSDGLFIGFDQDKNAIATAK 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + +Y ++ + F +++ + GV DGV+ DLGVSS Q+D DRGFS+ + P Sbjct: 64 ERLAEYSDRVKFVHSNFENIKEELEKIGVHKIDGVLADLGVSSHQLDEADRGFSYMQDAP 123 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM SA +VVN+ ++L +I+ GE+ A RIA IV+ R P +TT +L Sbjct: 124 LDMRMDVRKDFSAYNVVNEYTEEELAKIIKDYGEDNWAKRIAKFIVEGRAEKPIETTGEL 183 Query: 192 SSLIQKTVYFSKNNRI---HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +I+K + K RI HPA R+FQA+RI VNNE+ + + + A + GG + ++ Sbjct: 184 VDIIKKAI--PKKARIDGPHPAKRTFQAIRIEVNNELGVITKMIDDACSIMNPGGRICII 241 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHP-AVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+VK F S + M + + IT+K ++P+ E++ N RSR Sbjct: 242 TFHSLEDRIVKNEFKYLSLDCVCPPEMPFCQCDKVSEVKVITRKPILPSAEEIEMNPRSR 301 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 302 SAKLRVAEK 310 >gi|301155878|emb|CBW15347.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Haemophilus parainfluenzae T3T1] Length = 320 Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 126/315 (40%), Positives = 176/315 (55%), Gaps = 20/315 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQ 75 +H+ VLL + + L + +D TFG GG+SR S +IA+DRDP A++ Sbjct: 9 EHITVLLHEAVNGLALKENGIYIDGTFGRGGHSRLILSQLSENGRLIAIDRDPRAIAEA- 67 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E ++D + F + +FS + D +DG++ DLGVSS Q+D DRGFSF K G Sbjct: 68 EKIQDPR--FHIEHNSFSHIPDICQKLDLVGKIDGILLDLGVSSPQLDEADRGFSFMKDG 125 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP------ 184 PLDMRM + G+SA++ + Q +V DLT +L GEE+ A RIA AIV+ +SA Sbjct: 126 PLDMRMDTTQGLSAAEWLKQVSVDDLTWVLKTFGEERFAKRIATAIVEFNKSAVKNGTEC 185 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 T L+ LI + V F K+ HPATRSFQA+RI++N E++EL L SA L G Sbjct: 186 LSRTSQLAELIAQAVPF-KDKHKHPATRSFQAIRIYINAELDELESVLNSALDMLAPEGR 244 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ--SITKKVVVPTQEDVAF 302 L ++SFHSLEDR+VK F +S R + Q I K + P++ +++ Sbjct: 245 LSIISFHSLEDRMVKHFMRKQSKGEDIPRGLPLREDQIQRNQKLKIIGKAIQPSEAEISA 304 Query: 303 NRRSRSAKLRAGMRT 317 N RSRSA LR R Sbjct: 305 NPRSRSAVLRIAERV 319 >gi|254372569|ref|ZP_04988058.1| S-adenosyl-methyltransferase [Francisella tularensis subsp. novicida GA99-3549] gi|151570296|gb|EDN35950.1| S-adenosyl-methyltransferase [Francisella novicida GA99-3549] Length = 305 Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 121/307 (39%), Positives = 181/307 (58%), Gaps = 22/307 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77 H VLL++ I LN P + +DATFG GG+S++ +IA D+D A+S +E Sbjct: 2 HYSVLLQESINDLNINPQGIYIDATFGRGGHSKAILNRLTTGRLIAFDKDLDAISYAREN 61 Query: 78 MRDYKEQFSLFQ---ATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 QFS F+ A+F+ + DY +DG++ DLGVSS Q+D RGFSF + Sbjct: 62 F-----QFSNFEIVHASFASIYDYCLQHSLLGKIDGIIMDLGVSSPQLDNAARGFSFTHN 116 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTT 188 GPLDMRM S GI+AS + + +V DL+ I + GEE+ A +IA I +Q+ TT Sbjct: 117 GPLDMRMDVSKGITASQALEELSVDDLSYIFKVYGEERFAKKIALRIKDYIQQNGSISTT 176 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ LI+ T+ K + +PATR FQALRI+VNNE+++L L + +K+GG + + Sbjct: 177 LELAELIRATI--GKKEKKNPATRCFQALRIYVNNELKDLEALLENILAVIKSGGRIAAI 234 Query: 249 SFHSLEDRLVKKFFASR---SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 SFHSLEDR+VK+ F++ ++ + M+P ++ + ITKK ++++ N R Sbjct: 235 SFHSLEDRIVKQKFSALINPKQELNRITKMLPQDSSQIKLKWITKK-SKANEDELNQNVR 293 Query: 306 SRSAKLR 312 SRSA LR Sbjct: 294 SRSAILR 300 >gi|116492952|ref|YP_804687.1| S-adenosyl-methyltransferase MraW [Pediococcus pentosaceus ATCC 25745] gi|122265584|sp|Q03EX7|RSMH_PEDPA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|116103102|gb|ABJ68245.1| SAM-dependent methyltransferase for cell envelope biogenesis [Pediococcus pentosaceus ATCC 25745] Length = 314 Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 113/305 (37%), Positives = 179/305 (58%), Gaps = 13/305 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H VLLE+ + L+ + +D T G GG+SR K+G N + + D+D A+ Q+ Sbjct: 6 HTTVLLEETVNGLDVKEDGIYVDCTLGGGGHSRLILSKLGENGHLYSFDQDQTAIDYNQK 65 Query: 77 TMRDY--KEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +Y K Q + ++ F L++ ++ GVDGV++DLGVSS Q D RGFS++ Sbjct: 66 NLAEYVAKGQVTFVKSNFRNLKNELNHLGIDGVDGVLYDLGVSSPQFDDAGRGFSYRFDA 125 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM ++A +VVN+ + DL RI GEEK + ++A I R+ P +TT + Sbjct: 126 PLDMRMDQTQKLNAREVVNEWSYNDLVRIFFRYGEEKYSKQVARKIESTREEKPIETTGE 185 Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ LI+ + ++ HPA + FQA+RI VN+E+ L + L A + L G + V++ Sbjct: 186 LADLIKSAIPAAARRTGGHPAKKIFQAIRIAVNDELGALEESLEQALQILNPAGRISVIT 245 Query: 250 FHSLEDRLVKKFFASRS--GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 F SLEDRLVK+ F ++ G + A +IP + P ++ I +K ++P+++++ NRRS Sbjct: 246 FQSLEDRLVKRMFKEQTEIGDLPAGLPIIPDDMKPK-YKLINRKPIIPSEDELEENRRSH 304 Query: 308 SAKLR 312 SAKLR Sbjct: 305 SAKLR 309 >gi|207092313|ref|ZP_03240100.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori HPKX_438_AG0C1] Length = 308 Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 121/304 (39%), Positives = 181/304 (59%), Gaps = 20/304 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVSCGQET 77 H VLL++V+ P V++D T G GG+S++ K +I +D+D FA +E Sbjct: 8 HQSVLLQEVLQAFAPLEKGVLIDCTLGLGGHSKAILSQKPHLKLIGIDKDKFAQEIAKER 67 Query: 78 MRDYKEQFSLFQATFSQ-----LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +++++ +++L F++ L+ + +K + GV+ DLGVSS+Q+D +RGF+F S Sbjct: 68 LKEFEGRYNLLSGGFAKRFKEALETH--NKEIKGVLVDLGVSSLQLDDDNRGFNFH-SHA 124 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S ++A V+N V L +I GE K+ +IAH I +RR PF+ +DL Sbjct: 125 LDMRMDLESELNAQKVINSYPVIALEKIFKDYGEIKEYKKIAHKIAERRAKKPFKDAKDL 184 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 S + FSKN +IHPAT FQA+RI VN+E+EEL + L+ A + LK G +L V+SFH Sbjct: 185 SEFLSS---FSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCA-RNLK-GAILCVISFH 239 Query: 252 SLEDRLVKKFFASRSGKVMA---VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SLED LVK F + + SN H A+ + +TKK + P+ E++ NRRSRS Sbjct: 240 SLEDVLVKNAFKDYAKNCICDPLSFKCACSNNH-ALGEILTKKPITPSPEEIKNNRRSRS 298 Query: 309 AKLR 312 AK+R Sbjct: 299 AKMR 302 >gi|263447893|sp|A1R5F0|RSMH_ARTAT RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 332 Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 121/318 (38%), Positives = 181/318 (56%), Gaps = 19/318 (5%) Query: 20 HVPVLLEKVIALLNPAPG----------KVILDATFGAGGYSRSFCKMGSNV--IALDRD 67 HVPVL ++ I LL APG V +DAT G GG+S + + ++ + +DRD Sbjct: 14 HVPVLKDRCINLL--APGFEAARKRGERPVAIDATLGMGGHSEAMLQRFPDLHLVGIDRD 71 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRG 124 A++ + + ++ L A + +++D + D GV G++ DLGVSS+Q+D +RG Sbjct: 72 EEALALAGARLEPFSDRTDLVHAVYDEIEDVLLDLGVPEVHGILMDLGVSSLQLDERERG 131 Query: 125 FSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 F++ PLDMRM S G +A+DVVN + +L RI+ GEEK A RIA+ IV R Sbjct: 132 FAYSYDAPLDMRMDTSRGQTAADVVNNYSEDELVRIIRKWGEEKFAGRIANRIVNARAEK 191 Query: 184 PFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 PF TT +L I+ V + + HPA R+FQALRI VN E++ L + + +A A G Sbjct: 192 PFATTGELVEQIRSVVPAAAAKSGGHPAKRTFQALRIEVNEELDVLERAVPAAVAATAMG 251 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G ++V+S+HSLED++VK F + S + + H ++ITK VPT ++A Sbjct: 252 GRIVVMSYHSLEDKIVKSVFQAGSKSSAPLGFPVELEEHKPELKTITKGTEVPTAAEIAE 311 Query: 303 NRRSRSAKLRAGMRTVER 320 N R+ SA+LRA R +R Sbjct: 312 NPRAASARLRAVERIKQR 329 >gi|301169870|emb|CBW29474.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Haemophilus influenzae 10810] gi|309973403|gb|ADO96604.1| 16S rRNA m(4)C1402 methyltranserfase [Haemophilus influenzae R2846] Length = 321 Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 128/318 (40%), Positives = 182/318 (57%), Gaps = 30/318 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQE 76 H+ VLL + + L + +D TFG GG+SR ++ SN +IA+DRDP A++ E Sbjct: 12 HITVLLHEAVNGLALKENGIYIDGTFGRGGHSRFILSQLSSNGRLIAVDRDPRAIA---E 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +F + +FS + + + DK +DG++ DLGVSS Q+D +RGFSF K G Sbjct: 69 AHKIQDSRFQIEHNSFSHIPE-ICDKLNLVGKIDGILLDLGVSSPQLDEAERGFSFMKDG 127 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ- 189 PLDMRM + G+SA + + Q +++DLT +L GEE+ A RIA AIV +SA +T+ Sbjct: 128 PLDMRMDTTQGLSAEEWLKQVSIEDLTWVLKTFGEERFAKRIATAIVDFNKSAVKNSTEF 187 Query: 190 -----DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 L+ LI + V F K+ HPATRSFQA+RIF+N+E++EL L SA L G Sbjct: 188 LSRTSQLAELISQAVPF-KDKHKHPATRSFQAIRIFINSELDELESLLNSALDMLAPEGR 246 Query: 245 LIVVSFHSLEDRLVKKFFASRSG-----KVMAVRH-MIPSNAHPAVFQSITKKVVVPTQE 298 L ++SFHSLEDR+VK F +S K + +R I N I K + P+ Sbjct: 247 LSIISFHSLEDRMVKHFMKKQSKGEDIPKGLPLREDQIQRNQK----LRIIGKAIQPSDA 302 Query: 299 DVAFNRRSRSAKLRAGMR 316 ++ N RSRSA LR R Sbjct: 303 EIQANPRSRSAILRVAER 320 >gi|332982167|ref|YP_004463608.1| S-adenosyl-methyltransferase MraW [Mahella australiensis 50-1 BON] gi|332699845|gb|AEE96786.1| S-adenosyl-methyltransferase MraW [Mahella australiensis 50-1 BON] Length = 312 Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 120/311 (38%), Positives = 168/311 (54%), Gaps = 27/311 (8%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H PVL+E+V+ ++ G + +D T G GG++ C+ +I +D+D A++ E Sbjct: 6 HKPVLVEEVMQYMSCRKGGIYIDGTIGGGGHALEICRRIDGDGLLIGIDKDDEALAHAAE 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 T+++Y L + F ++ V VDGV+ DLGVSS Q+D RGFS+ L Sbjct: 66 TLKEYSSCVRLIKGDFRYMKALVNGIEVNEVDGVLLDLGVSSHQLDDAGRGFSYNAEAVL 125 Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + +A DVVN + K L I+ GEE+ A RIA IVK RQ P +TT L Sbjct: 126 DMRMDKQQLLTAKDVVNTYDEKRLYEIIKDYGEERWAKRIASFIVKERQRYPIETTGQLV 185 Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I++ + ++ HPA R+FQA+RI VN+E+ + +GL A LK GG L V+SFH Sbjct: 186 EVIKRAIPAAARREGPHPARRTFQAIRIEVNDELNSIKEGLIQAMDCLKPGGRLCVISFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHP----------AVFQSITKKVVVPTQEDVA 301 SLEDRLVK F R P P V +TKK V+ T ++V Sbjct: 246 SLEDRLVKDTFR---------RWQNPCTCPPDTPLCVCGNKPVAAIVTKKPVIATPDEVE 296 Query: 302 FNRRSRSAKLR 312 N R+RSAKLR Sbjct: 297 SNPRARSAKLR 307 >gi|311029920|ref|ZP_07708010.1| S-adenosyl-methyltransferase MraW [Bacillus sp. m3-13] Length = 312 Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 114/303 (37%), Positives = 175/303 (57%), Gaps = 11/303 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 HV VLL + + LN +D T G G+S K S+ +IA D+D A+ + Sbjct: 4 HVTVLLNEAVEGLNIKEDGTYVDCTLGGAGHSSEIVKQLSDKGRLIAFDQDDHALEHAKN 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + +Y ++ ++ F L++ + ++G VDGV+FDLGVSS Q+D +RGFS+ PL Sbjct: 64 VLHNYLDRVIFIKSNFKHLKEKLYEQGITKVDGVLFDLGVSSPQLDTPERGFSYHHEAPL 123 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S +SA DVVN+ + + L RI GEEK + +IA I + R+S P +TT +L Sbjct: 124 DMRMDMNSPLSAYDVVNEWSYEKLVRIFFQYGEEKFSKQIARKIEEYRKSKPIETTLELV 183 Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + ++ HPA R FQA+RI VN+E+ + A LK GG + V++FH Sbjct: 184 EIIKDGIPAPARRTGGHPAKRVFQAIRIAVNDELGVFEDAIHQAIDVLKVGGRVSVITFH 243 Query: 252 SLEDRLVKKFFASRS--GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+ K F +S ++ +IP P + + IT+K ++P++E++ N R+RSA Sbjct: 244 SLEDRMCKVAFKEKSQLPQLPPGLPIIPEEFQP-ILKLITRKPILPSEEELETNNRARSA 302 Query: 310 KLR 312 KLR Sbjct: 303 KLR 305 >gi|42783012|ref|NP_980259.1| S-adenosyl-methyltransferase MraW [Bacillus cereus ATCC 10987] gi|47565791|ref|ZP_00236830.1| S-adenosyl-methyltransferase MraW [Bacillus cereus G9241] gi|222097364|ref|YP_002531421.1| s-adenosyl-methyltransferase mraw [Bacillus cereus Q1] gi|228987063|ref|ZP_04147188.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229157497|ref|ZP_04285574.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus ATCC 4342] gi|88911698|sp|P62468|RSMH_BACC1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263447274|sp|B9IVZ5|RSMH_BACCQ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|42738939|gb|AAS42867.1| S-adenosyl-methyltransferase MraW [Bacillus cereus ATCC 10987] gi|47557071|gb|EAL15400.1| S-adenosyl-methyltransferase MraW [Bacillus cereus G9241] gi|221241422|gb|ACM14132.1| S-adenosyl-methyltransferase MraW [Bacillus cereus Q1] gi|228625947|gb|EEK82697.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus ATCC 4342] gi|228772657|gb|EEM21098.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|324327818|gb|ADY23078.1| 16S rRNA m(4)C1402 methyltranserfase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 310 Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 115/304 (37%), Positives = 175/304 (57%), Gaps = 11/304 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 +HV VLL++ + L+ PG +D T G GG+S G +IA D+D A+ + Sbjct: 3 NHVTVLLKETVDGLDIKPGGTYVDCTLGGGGHSSYLLSQLTEGGRLIAFDQDEIAIQNAK 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E Y EQF ++ F L + + + G VDG++FDLGVSS Q+D +RGFS+ P Sbjct: 63 EKFSSYGEQFITVKSNFRYLSEKLQELGITEVDGILFDLGVSSPQLDTPERGFSYHHDAP 122 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM ++A DVVN + + L RI GEEK + +IA I R++ +TT +L Sbjct: 123 LDMRMDQDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTGEL 182 Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 LI++ + ++ HPA R FQA+RI VN+E++ + L SA + +K GG + V++F Sbjct: 183 VELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRVSVITF 242 Query: 251 HSLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 HSLEDR+ K F S + ++ +IP P + + IT+K ++P+ ++ N R+RS Sbjct: 243 HSLEDRICKTTFKRNSTTPQLPPGLPIIPDEFKPKL-KLITRKPILPSDIELEENNRARS 301 Query: 309 AKLR 312 AKLR Sbjct: 302 AKLR 305 >gi|302338060|ref|YP_003803266.1| S-adenosyl-methyltransferase MraW [Spirochaeta smaragdinae DSM 11293] gi|301635245|gb|ADK80672.1| S-adenosyl-methyltransferase MraW [Spirochaeta smaragdinae DSM 11293] Length = 320 Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 122/314 (38%), Positives = 179/314 (57%), Gaps = 12/314 (3%) Query: 20 HVPVLLEKVIALLNPAPGK-VILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76 H V+ E+ L+PA K +++D T G GG+S F G ++ LD D + ++ Sbjct: 10 HRSVMAEEAFHYLSPALEKGLLVDCTLGEGGHSELFLSRLPGCRIVGLDADEKILEVARQ 69 Query: 77 TMRDYKEQFSLFQATFSQL-QDY-VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + + E+ LF F+ +DY + D+ D V+FDLG+S + RGFSF++ PLD Sbjct: 70 RLAPFGERVRLFNTWFNVFFRDYPLGDERPDAVLFDLGISVFHYERSGRGFSFREDEPLD 129 Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MR+ SA+D++N K+L ++ GEE+ + R A AIV RRQS PF TT++L Sbjct: 130 MRLEAHLEQSAADIINTYPEKELADLIFRFGEERLSRRFASAIVARRQSKPFTTTKELEE 189 Query: 194 LIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I S ++ RIHPATR+FQALRI VN E+ L L A L+ GG++ V+SFHS Sbjct: 190 VIWTASPQSYRHGRIHPATRTFQALRIAVNGELARLESALGDAFARLRPGGMMGVISFHS 249 Query: 253 LEDRLVKKFFAS-RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK FF + G + + I S+ + +TKK + PT+E+V N SRSAK Sbjct: 250 LEDRIVKHFFLDKKKGCISSSGAPIDSDRGVTAAEILTKKPLRPTEEEVRVNAPSRSAKF 309 Query: 312 RAGMRTVERSIEDD 325 R V + I++D Sbjct: 310 ----RVVRKLIDED 319 >gi|217034743|ref|ZP_03440143.1| hypothetical protein HP9810_898g11 [Helicobacter pylori 98-10] gi|216942736|gb|EEC22294.1| hypothetical protein HP9810_898g11 [Helicobacter pylori 98-10] Length = 324 Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 121/304 (39%), Positives = 179/304 (58%), Gaps = 20/304 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVSCGQET 77 H VLL++V+ P V++D T G GG+S++ K +I +D+D FA +E Sbjct: 24 HQSVLLQEVLQAFAPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFAQEIAKER 83 Query: 78 MRDYKEQFSLFQATFSQ-----LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 ++ ++ +++L F++ L+ + DK + GV+ DLGVSS+Q+D +RGF+F S Sbjct: 84 LKAFEGRYNLLSGGFAKRFKEALETH--DKEIKGVLVDLGVSSLQLDDDNRGFNFH-SHA 140 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ G ++A V+N V L +I GE K+ +IAH I +RR PF+ +DL Sbjct: 141 LDMRMNLEGDLNAQKVINSYPVVALEKIFRDYGEIKEYKKIAHKIAERRAKKPFKDAKDL 200 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 S + SKN +IHPAT FQA+RI VN E+EEL + L+ A + LK G +L V+SFH Sbjct: 201 SDFLSS---LSKNKKIHPATLVFQAVRIEVNRELEELKEFLQCA-RNLK-GAILCVISFH 255 Query: 252 SLEDRLVKKFFASRSGKVMA---VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SLED LVK F + + SN H A+ + +TKK + P+ E++ NRRSRS Sbjct: 256 SLEDSLVKNAFKDYAKNCICDPLSFKCTCSNNH-ALGEILTKKPITPSPEEIKNNRRSRS 314 Query: 309 AKLR 312 AK+R Sbjct: 315 AKMR 318 >gi|119961336|ref|YP_947462.1| S-adenosyl-methyltransferase MraW [Arthrobacter aurescens TC1] gi|119948195|gb|ABM07106.1| putative S-adenosyl-methyltransferase mraW [Arthrobacter aurescens TC1] Length = 378 Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 121/318 (38%), Positives = 181/318 (56%), Gaps = 19/318 (5%) Query: 20 HVPVLLEKVIALLNPAPG----------KVILDATFGAGGYSRSFCKMGSNV--IALDRD 67 HVPVL ++ I LL APG V +DAT G GG+S + + ++ + +DRD Sbjct: 60 HVPVLKDRCINLL--APGFEAARKRGERPVAIDATLGMGGHSEAMLQRFPDLHLVGIDRD 117 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRG 124 A++ + + ++ L A + +++D + D GV G++ DLGVSS+Q+D +RG Sbjct: 118 EEALALAGARLEPFSDRTDLVHAVYDEIEDVLLDLGVPEVHGILMDLGVSSLQLDERERG 177 Query: 125 FSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 F++ PLDMRM S G +A+DVVN + +L RI+ GEEK A RIA+ IV R Sbjct: 178 FAYSYDAPLDMRMDTSRGQTAADVVNNYSEDELVRIIRKWGEEKFAGRIANRIVNARAEK 237 Query: 184 PFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 PF TT +L I+ V + + HPA R+FQALRI VN E++ L + + +A A G Sbjct: 238 PFATTGELVEQIRSVVPAAAAKSGGHPAKRTFQALRIEVNEELDVLERAVPAAVAATAMG 297 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G ++V+S+HSLED++VK F + S + + H ++ITK VPT ++A Sbjct: 298 GRIVVMSYHSLEDKIVKSVFQAGSKSSAPLGFPVELEEHKPELKTITKGTEVPTAAEIAE 357 Query: 303 NRRSRSAKLRAGMRTVER 320 N R+ SA+LRA R +R Sbjct: 358 NPRAASARLRAVERIKQR 375 >gi|229031550|ref|ZP_04187550.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus AH1271] gi|228729839|gb|EEL80819.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus AH1271] Length = 310 Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 115/303 (37%), Positives = 174/303 (57%), Gaps = 11/303 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HV VLL++ + L+ PG +D T G GG+S G +IA D+D A+ +E Sbjct: 4 HVTVLLKETVDGLDIKPGGTYVDCTLGGGGHSSYLLSQLTEGGKLIAFDQDEIAIQNAKE 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 Y EQF ++ F L + + + G VDG++FDLGVSS Q+D +RGFS+ PL Sbjct: 64 KFSSYGEQFITVKSNFRYLSEKLQELGITEVDGILFDLGVSSPQLDTPERGFSYHHDAPL 123 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM ++A DVVN + + L RI GEEK + +IA I R++ +TT +L Sbjct: 124 DMRMDQDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTAELV 183 Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 LI++ + ++ HPA R FQA+RI VN+E++ + L SA + +K GG + V++FH Sbjct: 184 ELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRVSVITFH 243 Query: 252 SLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+ K F S + ++ +IP P + + IT+K ++P+ ++ N R+RSA Sbjct: 244 SLEDRICKTTFKRNSTTPQLPQGLPIIPDEFKPKL-KLITRKPILPSDIELEENNRARSA 302 Query: 310 KLR 312 KLR Sbjct: 303 KLR 305 >gi|240168225|ref|ZP_04746884.1| S-adenosyl-methyltransferase MraW [Mycobacterium kansasii ATCC 12478] Length = 330 Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 113/314 (35%), Positives = 179/314 (57%), Gaps = 18/314 (5%) Query: 21 VPVLLEKVIALLNPA-----P---GKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFA 70 +PVL + + LL PA P G +++DAT GAGG++ F + G +I LDRDP A Sbjct: 1 MPVLARRCVELLAPALTRRHPDGFGAILVDATLGAGGHAERFLRELPGLRLIGLDRDPSA 60 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSSMQIDCGDRG 124 + ++ + + E+ +L + + + + + G VDGV+FDLGVSSMQ+D +RG Sbjct: 61 LDIARDRLAPFAERITLIRTRYDGVASVLAELGYGAVESVDGVLFDLGVSSMQLDRAERG 120 Query: 125 FSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 F++ K PLDMRM ++A+D+VN + L IL GEE+ A RIA IV++R Sbjct: 121 FAYAKDAPLDMRMDPDIPLTAADIVNSYDEAALADILRRYGEERFARRIAERIVRQRAHT 180 Query: 184 PFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 PF +T +L +++ + + ++ HPA R+FQALRI VN+E++ L + +A AL+ G Sbjct: 181 PFTSTSELVAVVYQAIPAAARRTGGHPAKRTFQALRIAVNDELDTLRGAVPAAMAALRVG 240 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G ++V+++ SLEDR+VK+ FA + + H F+S+T ++ Sbjct: 241 GRIVVMAYQSLEDRIVKRVFADAVASKTPIGLPVELPGHGPRFRSLTHGAERADAAEMER 300 Query: 303 NRRSRSAKLRAGMR 316 N RS + +LRA R Sbjct: 301 NPRSAAVRLRALQR 314 >gi|90020487|ref|YP_526314.1| S-adenosyl-methyltransferase MraW [Saccharophagus degradans 2-40] gi|123277667|sp|Q21MH7|RSMH_SACD2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|89950087|gb|ABD80102.1| S-adenosyl-methyltransferase MraW [Saccharophagus degradans 2-40] Length = 312 Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 113/308 (36%), Positives = 176/308 (57%), Gaps = 14/308 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMG--SNVIALDRDPFAVSCGQE 76 H VLL++ + L P +D TFG GG+SR+ K+G + +D+DP AV+ G+ Sbjct: 6 HFSVLLQESVESLVVDPAGTYVDGTFGRGGHSRAILAKLGPEGKLFGIDKDPEAVAVGK- 64 Query: 77 TMRDYKEQFSLFQATFSQLQ-------DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 + +F + +F+ L+ D+ G+ GV+ DLGVSS Q+D +RGFSF Sbjct: 65 ALEAEDSRFRIVHGSFADLKHIDLLQADFAAG-GLSGVLVDLGVSSPQLDVAERGFSFMN 123 Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM+ +G++A++ +N A +D+ ++L GEE+ + +A AIV+RR+ PF T Sbjct: 124 DGPLDMRMNTEAGMTAAEWINTAKQEDIAQVLWEYGEERFSRHMAKAIVERREIKPFTRT 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 D + +++ + + HPATR+FQA+RIF+N E+E+L Q L + L GG +V+ Sbjct: 184 HDFAEVVKAANRKWEKGK-HPATRAFQAVRIFINRELEDLRQLLDDSVSVLAPGGRFVVI 242 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDR+VK+FF +S + + + I K + ++ N RSRS Sbjct: 243 SFHSLEDRMVKRFFRDQSMGKQFPKGLPVTEEMKKQNLKIIGKALKAGDTELTQNIRSRS 302 Query: 309 AKLRAGMR 316 A +R G R Sbjct: 303 AVMRVGER 310 >gi|217032718|ref|ZP_03438203.1| hypothetical protein HPB128_201g21 [Helicobacter pylori B128] gi|298736407|ref|YP_003728933.1| S-adenosyl-methyltransferase [Helicobacter pylori B8] gi|216945592|gb|EEC24245.1| hypothetical protein HPB128_201g21 [Helicobacter pylori B128] gi|298355597|emb|CBI66469.1| S-adenosyl-methyltransferase [Helicobacter pylori B8] Length = 308 Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 121/302 (40%), Positives = 180/302 (59%), Gaps = 16/302 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVSCGQET 77 H VLL++V+ P V++D T G GG+S++ K +I +D+D FA +E Sbjct: 8 HQSVLLQEVLQAFTPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFAQEIAKER 67 Query: 78 MRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++ ++ +++L F++ ++ + G + GV+ DLGVSS+Q+D +RGF+F S LD Sbjct: 68 LKAFEGRYNLLSGGFAKRFKEALEIHGERIKGVLVDLGVSSLQLDDDNRGFNFH-SHTLD 126 Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM S ++A V+N V L +I GE K+ +IAH I +RR PF+ +DLS Sbjct: 127 MRMDLESELNAQKVINSYPVVALEKIFRDYGEIKEYKKIAHKIAERRAKKPFRDAKDLSD 186 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 + FSKN +IHPAT FQA+RI VNNE+EEL + L+ A + LK G +L V+SFHSL Sbjct: 187 FLSS---FSKNKKIHPATLVFQAVRIEVNNELEELKEFLQCA-RNLK-GAILCVISFHSL 241 Query: 254 EDRLVKKFFASRSGKVMA---VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 ED LVK F + + + SN H A+ + +TKK + P+ E++ NRRSRSAK Sbjct: 242 EDALVKNAFKNYAKNCICDPLSFKCACSNNH-ALGEILTKKPITPSPEEIKNNRRSRSAK 300 Query: 311 LR 312 +R Sbjct: 301 MR 302 >gi|256827376|ref|YP_003151335.1| S-adenosyl-methyltransferase MraW [Cryptobacterium curtum DSM 15641] gi|256583519|gb|ACU94653.1| S-adenosyl-methyltransferase MraW [Cryptobacterium curtum DSM 15641] Length = 321 Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 117/309 (37%), Positives = 176/309 (56%), Gaps = 18/309 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQE 76 H+PVLL + + L G+ +DAT G G+S K ++ +D+D A++ + Sbjct: 10 HIPVLLTECLDYLRLETGRTYVDATLGGAGHSIEAAKHIQTAGTLVGIDQDEVALTAART 69 Query: 77 TM----RDYKEQFSLFQATFSQ-----LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 + D + + L + F LQ +P VD +FDLGVSS+QID RGFSF Sbjct: 70 RLLALPTDKRPELCLLRGNFGDMDELLLQADIP--SVDAFLFDLGVSSVQIDTPSRGFSF 127 Query: 128 QKSGPLDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 ++ PLDMRM S ++A++++N N DL RI+ +E+ A+RIA IV+ R A Sbjct: 128 KEKAPLDMRMDPGKSTLTAAEIINTYNAADLARIIRTYSDERWATRIADFIVQARTHARI 187 Query: 186 QTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 +T+ L +I+ + S + + HPA R+FQALRI VN+E++ L QGL +A + L GG Sbjct: 188 ETSDQLVDIIKAAIPASARRSGGHPAKRTFQALRIEVNSELDVLQQGLEAAIRWLAPGGR 247 Query: 245 LIVVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 L V+S+HSLEDR+VK+ F S G + + + + IT+K V+PT E++ N Sbjct: 248 LAVISYHSLEDRIVKETFLRFSRGCTCPPDLPVCVCGNVPIIKVITRKPVLPTPEEIERN 307 Query: 304 RRSRSAKLR 312 R+RSAKLR Sbjct: 308 PRARSAKLR 316 >gi|118497204|ref|YP_898254.1| S-adenosylmethionine-dependent methyltransferase [Francisella tularensis subsp. novicida U112] gi|254374028|ref|ZP_04989510.1| S-adenosyl-methyltransferase [Francisella novicida GA99-3548] gi|263447525|sp|A0Q5I5|RSMH_FRATN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|118423110|gb|ABK89500.1| S-adenosylmethionine-dependent methyltransferase [Francisella novicida U112] gi|151571748|gb|EDN37402.1| S-adenosyl-methyltransferase [Francisella novicida GA99-3548] gi|328676676|gb|AEB27546.1| S-adenosyl-methyltransferase MraW [Francisella cf. novicida Fx1] Length = 305 Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 121/307 (39%), Positives = 181/307 (58%), Gaps = 22/307 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77 H VLL++ I LN P + +DATFG GG+S++ +IA D+D A+S +E Sbjct: 2 HYSVLLQESINDLNINPQGIYIDATFGRGGHSKAILNRLTTGRLIAFDKDLDAISYAREN 61 Query: 78 MRDYKEQFSLFQ---ATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 QFS F+ A+F+ + DY +DG++ DLGVSS Q+D RGFSF + Sbjct: 62 F-----QFSNFEIVHASFASIYDYCLQHSLLGKIDGIIMDLGVSSPQLDNAARGFSFTHN 116 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTT 188 GPLDMRM S GI+AS + + +V DL+ I + GEE+ A +IA I +Q+ TT Sbjct: 117 GPLDMRMDVSKGITASQALEELSVDDLSYIFKVYGEERFARKIALRIKDYIQQNGSISTT 176 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ LI+ T+ K + +PATR FQALRI+VNNE+++L L + +K+GG + + Sbjct: 177 LELAELIRATI--GKKEKKNPATRCFQALRIYVNNELKDLEALLENILAVIKSGGRIAAI 234 Query: 249 SFHSLEDRLVKKFFASR---SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 SFHSLEDR+VK+ F++ ++ + M+P ++ + ITKK ++++ N R Sbjct: 235 SFHSLEDRIVKQKFSALINPKQELNRITKMLPQDSSQIKLKWITKK-SKANEDELNQNVR 293 Query: 306 SRSAKLR 312 SRSA LR Sbjct: 294 SRSAILR 300 >gi|54310311|ref|YP_131331.1| S-adenosyl-methyltransferase MraW [Photobacterium profundum SS9] gi|50402223|sp|P62475|RSMH_PHOPR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|46914752|emb|CAG21529.1| putative S-adenosylmethionine-dependent methyltransferaseinvolved in cell envelope biogenesis [Photobacterium profundum SS9] Length = 315 Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 122/313 (38%), Positives = 185/313 (59%), Gaps = 19/313 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQ 75 +H+ VLL + + L P + +D TFG GG+SR +G N + +DRDP A++ Q Sbjct: 6 EHISVLLHESVDGLAIKPDGIYIDGTFGRGGHSRLILSHLGENGRLYGIDRDPQAIAEAQ 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 T+ D + FS+ FS + Y+ ++ VDGV+ DLGVSS Q+D +RGFSF + G Sbjct: 66 -TIDDPR--FSIIHGPFSGMAQYMEERDLIGRVDGVLLDLGVSSPQLDDAERGFSFMRDG 122 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---PFQT 187 PLDMRM SGISA++ + +A D+ +L GEE+ A RIA IV+ R++ P Sbjct: 123 PLDMRMDPTSGISAAEWLAEAEADDIAWVLKEFGEERFAKRIARGIVEHRENPDKKPLTR 182 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T++L++LI F ++ HPATRSFQA+RI++N+E++E+ L A K L G L V Sbjct: 183 TKELAALISDVSPFRDKHK-HPATRSFQAIRIYINSELDEIETALNGAVKVLAPQGRLSV 241 Query: 248 VSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITK---KVVVPTQEDVAFN 303 +SFHSLEDR+VK+F S G + + + A+ + K K + P+++++ N Sbjct: 242 ISFHSLEDRMVKRFIRKNSKGPEVPAGFPLTEDQIKALGSADLKMASKAIKPSKDELGDN 301 Query: 304 RRSRSAKLRAGMR 316 +R+RS+ LR R Sbjct: 302 KRARSSVLRLAER 314 >gi|171462979|ref|YP_001797092.1| S-adenosyl-methyltransferase MraW [Polynucleobacter necessarius subsp. necessarius STIR1] gi|262824846|sp|B1XT01|RSMH_POLNS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|171192517|gb|ACB43478.1| S-adenosyl-methyltransferase MraW [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 316 Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 117/318 (36%), Positives = 193/318 (60%), Gaps = 29/318 (9%) Query: 20 HVPVLL-EKVIALL--------NPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRD 67 H PVLL E V AL+ N +++D TFG GG++++ K +++I+ D+D Sbjct: 5 HRPVLLAEAVTALVGGPLIQNQNSENHILVIDGTFGRGGHTQALLKELNPSAHMISFDKD 64 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 A++ Q+ + + +F+Q+ Y + VDG++ DLG+SS Q+D RGFSF Sbjct: 65 LDAIAVAQKI---NDPRLKIVHDSFAQMDQYAEAESVDGILLDLGISSPQVDEAHRGFSF 121 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA-PF 185 ++ GPLDMRM+ G++A++ + QA+++++T ++ GEE+ A +IA AIV +R+ P Sbjct: 122 RREGPLDMRMNTDHGLTAAEWLEQASLEEITHVIKTYGEERFAFQIARAIVAKREDGLPP 181 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 +TT L+SL+ V + + PATR+FQALRIF+N E+E+L GL++A K LK G L Sbjct: 182 KTTTQLASLVSSVVRTREAGQ-DPATRTFQALRIFINRELEDLELGLKAAMKLLKPGARL 240 Query: 246 IVVSFHSLEDRLVKKFFASRSG----KVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDV 300 V+SFHSLEDR+VK+F + + + + VR +P +A + I++ + P+ +V Sbjct: 241 AVISFHSLEDRIVKQFMQAHAKVDVPRGLPVREKDLPQSA----LKIISR--LKPSDAEV 294 Query: 301 AFNRRSRSAKLRAGMRTV 318 + N R+RSA +R + + Sbjct: 295 SENPRARSAIMRVAEKRI 312 >gi|90413032|ref|ZP_01221030.1| putative S-adenosylmethionine-dependent methyltransferaseinvolvedin cell envelope biogenesis [Photobacterium profundum 3TCK] gi|90326047|gb|EAS42486.1| putative S-adenosylmethionine-dependent methyltransferaseinvolvedin cell envelope biogenesis [Photobacterium profundum 3TCK] Length = 315 Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 122/313 (38%), Positives = 185/313 (59%), Gaps = 19/313 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQ 75 +H+ VLL + + L P + +D TFG GG+SR +G N + +DRDP A++ Q Sbjct: 6 EHISVLLHESVDGLAIKPDGIYIDGTFGRGGHSRLILSHLGENGRLYGIDRDPQAIAEAQ 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++ D + FS+ FS + Y+ ++ VDGV+ DLGVSS Q+D +RGFSF + G Sbjct: 66 -SIDDPR--FSIIHGPFSGMAQYMEERDLIGRVDGVLLDLGVSSPQLDDAERGFSFMRDG 122 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS---APFQT 187 PLDMRM SGISA++ + +A D+ +L GEE+ A RIA IV+ R++ AP Sbjct: 123 PLDMRMDPTSGISAAEWLAEAEADDIAWVLKEFGEERFAKRIARGIVEHRENPDKAPLTR 182 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T +L++LI F ++ HPATRSFQA+RI++N+E++E+ L A K L G L V Sbjct: 183 TTELAALISNVSPFRDKHK-HPATRSFQAIRIYINSELDEIETALNGAVKVLAPQGRLSV 241 Query: 248 VSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITK---KVVVPTQEDVAFN 303 +SFHSLEDR+VK+F S G + + + A+ + K K + P+++++ N Sbjct: 242 ISFHSLEDRMVKRFIRKNSKGPEVPAGFPLTEDQIKALGSADLKMASKAIKPSKDELGDN 301 Query: 304 RRSRSAKLRAGMR 316 +R+RS+ LR R Sbjct: 302 KRARSSVLRLAER 314 >gi|148657877|ref|YP_001278082.1| S-adenosyl-methyltransferase MraW [Roseiflexus sp. RS-1] gi|262826166|sp|A5UZS9|RSMH_ROSS1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|148569987|gb|ABQ92132.1| S-adenosyl-methyltransferase MraW [Roseiflexus sp. RS-1] Length = 313 Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 114/304 (37%), Positives = 170/304 (55%), Gaps = 22/304 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H PVLL +V+A L P PG +D T G GG++ + + S ++ +D DP A++ Sbjct: 23 HTPVLLAEVVAGLLPRPGGRYIDGTVGGGGHAAAILEASSPDGRLLGIDCDPAALAAAAA 82 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + Y ++ +L + +F ++ G V+GVV DLGVSS Q+D +RGFSFQ PL Sbjct: 83 RLAPYGDRVTLVRGSFREIGQLAATSGFVQVEGVVLDLGVSSYQLDTPERGFSFQAHAPL 142 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMR+ ++A+ +VN ++L ++ GEE+ + RIA AIV+ RQ P TT +L+ Sbjct: 143 DMRLDPDAPVTAAHLVNNLPEQELADLIFRYGEERGSRRIARAIVEARQRKPVTTTDELA 202 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +++ + + + RIHPATR+FQALRI VNNE+ L L L GG + +++FHS Sbjct: 203 AIVTRALG-GQRGRIHPATRTFQALRIAVNNELASLEAALPQIIDLLAPGGRMAIIAFHS 261 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK H + + A IT+K V + E+ N RSRSA+LR Sbjct: 262 LEDRIVK--------------HTLRAEAQAGRLHIITRKPVEASIEEQRANPRSRSARLR 307 Query: 313 AGMR 316 R Sbjct: 308 VAER 311 >gi|206976726|ref|ZP_03237630.1| S-adenosyl-methyltransferase MraW [Bacillus cereus H3081.97] gi|217961340|ref|YP_002339908.1| S-adenosyl-methyltransferase MraW [Bacillus cereus AH187] gi|229140568|ref|ZP_04269123.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus BDRD-ST26] gi|229198030|ref|ZP_04324744.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus m1293] gi|263447288|sp|B7HM39|RSMH_BACC7 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|206745036|gb|EDZ56439.1| S-adenosyl-methyltransferase MraW [Bacillus cereus H3081.97] gi|217067703|gb|ACJ81953.1| S-adenosyl-methyltransferase MraW [Bacillus cereus AH187] gi|228585509|gb|EEK43613.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus m1293] gi|228643129|gb|EEK99405.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus BDRD-ST26] Length = 310 Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 115/304 (37%), Positives = 175/304 (57%), Gaps = 11/304 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 +HV VLL++ + L+ PG +D T G GG+S G +IA D+D A+ + Sbjct: 3 NHVTVLLKETVDGLDIKPGGTYVDCTLGGGGHSSYLLSQLTEGGRLIAFDQDEIAIQNAK 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E Y EQF ++ F L + + + G VDG++FDLGVSS Q+D +RGFS+ P Sbjct: 63 EKFSSYGEQFITVRSNFRYLSEKLQELGITEVDGILFDLGVSSPQLDTPERGFSYHHDAP 122 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM ++A DVVN + + L RI GEEK + +IA I R++ +TT +L Sbjct: 123 LDMRMDQDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTGEL 182 Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 LI++ + ++ HPA R FQA+RI VN+E++ + L SA + +K GG + V++F Sbjct: 183 VELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRVSVITF 242 Query: 251 HSLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 HSLEDR+ K F S + ++ +IP P + + IT+K ++P+ ++ N R+RS Sbjct: 243 HSLEDRICKTTFKRNSTTPQLPPGLPIIPDEFKPKL-KLITRKPILPSDIELEENNRARS 301 Query: 309 AKLR 312 AKLR Sbjct: 302 AKLR 305 >gi|227499845|ref|ZP_03929938.1| S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Anaerococcus tetradius ATCC 35098] gi|227217954|gb|EEI83227.1| S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Anaerococcus tetradius ATCC 35098] Length = 309 Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 113/311 (36%), Positives = 173/311 (55%), Gaps = 22/311 (7%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 +H+PVL I LN V +D T G GG+S+ + S+ +IA+D+D A+ + Sbjct: 7 EHIPVLATDTIKNLNIKKDGVYVDLTLGKGGHSKMILENLSDKGRLIAIDQDKEAIEAAK 66 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E ++D+ + + F + ++ + + G +DG + D+GVSS QID +RGFS+ K GP Sbjct: 67 ENLKDFS-NVTFINSNFEKFEEVLANLGLDLIDGALMDIGVSSYQIDNAERGFSYMKDGP 125 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ ++A VVN+ + +L RI GEE+ + +A I+K+R +T L Sbjct: 126 LDMRMNQDNELTAEIVVNEYSQDELERIFFEYGEERFSKSVARNIIKQRSEGRIDSTIKL 185 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+K++ K+N HP R FQALRI VN E+E L + + LK GG + ++SFH Sbjct: 186 RDIIRKSI---KSNETHPEKRVFQALRIEVNRELEVLENTIETVVDHLKVGGRIAIISFH 242 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSN------AHPAVFQSITKKVVVPTQEDVAFNRR 305 SLEDR+VK F K +A + P H A + IT+K + T +++ N R Sbjct: 243 SLEDRIVKNKF-----KDLATSCICPPELPVCVCNHKAKIKVITRKPITATMKELKMNSR 297 Query: 306 SRSAKLRAGMR 316 S+ AKLR G R Sbjct: 298 SKPAKLRVGER 308 >gi|325001098|ref|ZP_08122210.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudonocardia sp. P1] Length = 337 Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 114/308 (37%), Positives = 171/308 (55%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGK---VILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 H PVLLE+V ALL PA V +DAT G GG++ + V+ LDRDP A+ Sbjct: 16 HTPVLLERVSALLAPAIADRPAVYVDATLGMGGHAAALLATHPQLTVVGLDRDPQALDLA 75 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y ++ A + ++ + + + GV D ++FDLGVSS+Q+D +RGFS+ + Sbjct: 76 GRRLTAYADRLRPVHAVYDRIGEALDETGVGPADAILFDLGVSSLQLDEVERGFSYSRDA 135 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM +G +A+DV+N L RIL GEE+ A IA+AIV+ R PF + + Sbjct: 136 DLDMRMDPTTGPTAADVLNTYTAPQLRRILREYGEERFAGPIANAIVRNRDKRPFTRSAE 195 Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L L+ V S+ HPA R+FQALRI VN E++ L L +A AL GG ++V++ Sbjct: 196 LVELLYGVVPAASRRTGGHPAKRTFQALRIEVNAELDVLRDALPAAFDALAPGGRIVVLA 255 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 +HSLEDR+ K+ A R+ + + H F+ +T+ + +++ N R+ Sbjct: 256 YHSLEDRITKRALAERTRSRTPLDLPVELPGHEPEFRLLTRGAETASDDEIERNPRAAPV 315 Query: 310 KLRAGMRT 317 +LRA RT Sbjct: 316 RLRAAERT 323 >gi|332673556|gb|AEE70373.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori 83] Length = 308 Score = 190 bits (483), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 120/304 (39%), Positives = 179/304 (58%), Gaps = 20/304 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVSCGQET 77 H VLL++V+ P V++D T G GG+S++ K +I +D+D FA +E Sbjct: 8 HQSVLLQEVLQAFAPLEEGVLIDCTLGLGGHSKAILSQKPHLKLIGIDKDKFAQEIAKER 67 Query: 78 MRDYKEQFSLFQATFSQ-----LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 ++ ++ +++L F++ L+ + +K + GV+ DLGVSS+Q+D +RGF+F S Sbjct: 68 LKAFEGRYNLLSGGFAKRFKEALETH--NKEIKGVLVDLGVSSLQLDDDNRGFNFH-SHA 124 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM G ++A ++N V L +I GE K+ +IAH I +RR PF+ +DL Sbjct: 125 LDMRMDLEGDLNAQKIINSYPVVALEKIFKDYGEIKEYKKIAHKIAERRAKKPFKDAKDL 184 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 S + FSKN +IHPAT FQA+RI VN E+EEL + L+ A + LK G +L V+SFH Sbjct: 185 SDFLSS---FSKNKKIHPATLVFQAVRIEVNRELEELKEFLQCA-RNLK-GAILCVISFH 239 Query: 252 SLEDRLVKKFFASRSGKVMA---VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SLED LVK F + + SN H A+ + +TKK + P+ E++ NRRSRS Sbjct: 240 SLEDSLVKNAFKDYAKNCICDPLSFKCTCSNNH-ALGEILTKKPITPSPEEIKNNRRSRS 298 Query: 309 AKLR 312 AK+R Sbjct: 299 AKMR 302 >gi|312140150|ref|YP_004007486.1| sam dependent methyltransferase mraw [Rhodococcus equi 103S] gi|311889489|emb|CBH48806.1| SAM dependent methyltransferase MraW [Rhodococcus equi 103S] Length = 390 Score = 190 bits (483), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 116/326 (35%), Positives = 180/326 (55%), Gaps = 30/326 (9%) Query: 20 HVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPF 69 HVPVLL + LL PA G V++DAT G GG+S F + G ++I LDRDP Sbjct: 71 HVPVLLNRADDLLGPAITADNPRGDGAVMIDATLGLGGHSEYFLRTYPGLHLIGLDRDPE 130 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD------GVVFDLGVSSMQIDCGDR 123 A+ + + Y ++ + + + + + G+D ++FDLGVSSMQ+D DR Sbjct: 131 ALRIASDRLAPYADRTTFVHTRYDGIVEALGQAGLDPVGSVHAILFDLGVSSMQLDEADR 190 Query: 124 GFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GF++ PLDMRM+ +GI+A++V+N + +L RIL GEE+ A RIA IV+RRQ Sbjct: 191 GFAYSIDAPLDMRMNPTTGITAAEVLNTYSHGELARILSTYGEERFAGRIASEIVRRRQK 250 Query: 183 APFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 PF T+ L L+ T+ ++ HPA R+FQALR+ VN E++ L + + AL Sbjct: 251 QPFTTSAALVELLYDTIPAATRRTGGHPAKRTFQALRVEVNGELDSLRDAIPAGLDALAV 310 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRS------GKVMAVRHMIPSNAHPAVFQSITKKVVVP 295 GG ++ +S+ SLEDR+VK+ A R+ G + + M P F+ +T+ Sbjct: 311 GGRVVFMSYQSLEDRVVKQELAPRAKSKTPEGLPVELPGMGPE------FKILTRGAERA 364 Query: 296 TQEDVAFNRRSRSAKLRAGMRTVERS 321 ++ ++ N R+ +LRA R ++ Sbjct: 365 SEAEIEDNPRAAPVRLRAAERIARKA 390 >gi|332670119|ref|YP_004453127.1| S-adenosyl-methyltransferase MraW [Cellulomonas fimi ATCC 484] gi|332339157|gb|AEE45740.1| S-adenosyl-methyltransferase MraW [Cellulomonas fimi ATCC 484] Length = 337 Score = 190 bits (483), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 117/318 (36%), Positives = 190/318 (59%), Gaps = 18/318 (5%) Query: 15 HTIGD----HVPVLLEKVIALLNPAP---GKVILDATFGAGGYS----RSFCKMGSNVIA 63 H +GD H PVLL++ + LL PA G V++D+T G GG++ R+F + V+ Sbjct: 4 HDLGDAATRHTPVLLQRCLDLLAPALAADGSVMVDSTLGMGGHTEGVLRAFPHV--RVVG 61 Query: 64 LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDC 120 +DRDP A++ + + ++F+ A + ++ + + G+D GV+ DLGVSS+Q+D Sbjct: 62 IDRDPQALALAGRRLAPFGDRFTGVHAVYDEIGEVLDGLGIDHVQGVLMDLGVSSLQLDE 121 Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS+ PLDMRM S G +A+DVVN + +DL R+L + GEE+ A+RIA ++V+ Sbjct: 122 RERGFSYAHDAPLDMRMDASRGQTAADVVNGYDERDLARVLRVYGEERFAARIARSVVRA 181 Query: 180 RQSAPFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R+ AP T +L L++ ++ ++ HPA R+FQALRI VN E+E L + L ++ +A Sbjct: 182 REKAPLTRTGELVDLVRASIPAATRKTGGHPAKRTFQALRIEVNGELEVLERALPASVEA 241 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L GG ++V ++HSLEDRLVK+ A+ + + H + +T+ + Sbjct: 242 LAVGGRIVVEAYHSLEDRLVKRTLAAGATSSAPPDLPVEPETHAPYLRLVTRGAEEADEA 301 Query: 299 DVAFNRRSRSAKLRAGMR 316 ++A N R++S +LRA R Sbjct: 302 ELARNPRAQSVRLRAAER 319 >gi|145637120|ref|ZP_01792783.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae PittHH] gi|145269774|gb|EDK09714.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae PittHH] Length = 321 Score = 190 bits (483), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 128/318 (40%), Positives = 182/318 (57%), Gaps = 30/318 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQE 76 H+ VLL + + L + +D TFG GG+SR ++ SN +IA+DRDP A++ E Sbjct: 12 HITVLLHEAVNGLALKENGIYIDGTFGRGGHSRFILSQLSSNGRLIAVDRDPRAIA---E 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +F + +FS + + + DK +DG++ DLGVSS Q+D +RGFSF K G Sbjct: 69 AHKIQDSRFQIEHNSFSHIPE-ICDKLNLVGKIDGILLDLGVSSPQLDEAERGFSFMKDG 127 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ- 189 PLDMRM + G+SA + + Q +++DLT +L GEE+ A RIA AIV +SA +T+ Sbjct: 128 PLDMRMDTTQGLSAEEWLKQVSIEDLTWVLKTFGEERFAKRIATAIVDFNKSAVKNSTEF 187 Query: 190 -----DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 L+ LI + V F K+ HPATRSFQA+RIF+N+E++EL L SA L G Sbjct: 188 LSRTSQLAELISQAVPF-KDKYKHPATRSFQAIRIFINSELDELESLLNSALDMLAPEGR 246 Query: 245 LIVVSFHSLEDRLVKKFFASRSG-----KVMAVRH-MIPSNAHPAVFQSITKKVVVPTQE 298 L ++SFHSLEDR+VK F +S K + +R I N I K + P+ Sbjct: 247 LSIISFHSLEDRMVKHFMKKQSKGEDIPKGLPLREDQIQRNQK----LRIIGKAIQPSDA 302 Query: 299 DVAFNRRSRSAKLRAGMR 316 ++ N RSRSA LR R Sbjct: 303 EIQANPRSRSAILRVAER 320 >gi|317178936|dbj|BAJ56724.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori F30] Length = 308 Score = 190 bits (483), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 121/304 (39%), Positives = 178/304 (58%), Gaps = 20/304 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVSCGQET 77 H VLL++V+ P V++D T G GG+S++ K +I +D+D FA +E Sbjct: 8 HQSVLLQEVLQAFAPLEEGVLIDCTLGLGGHSKAILSQKPHLKLIGIDKDKFAQEIAKER 67 Query: 78 MRDYKEQFSLFQATFSQ-----LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 ++ ++ +++L F++ L+ + DK + GV+ DLGVSS+Q+D +RGF+F S Sbjct: 68 LKAFEGRYNLLSGGFAKRFKEALETH--DKEIKGVLVDLGVSSLQLDDDNRGFNFH-SHA 124 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM G ++A V+N V L +I GE K+ +IAH I +RR PF+ +DL Sbjct: 125 LDMRMDLEGGLNAQKVINSYPVVALEKIFKDYGEIKEYKKIAHKIAERRAKKPFKDAKDL 184 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 S + SKN +IHPAT FQA+RI VN E+EEL + L+ A + LK G +L V+SFH Sbjct: 185 SDFLSS---LSKNKKIHPATLVFQAVRIEVNRELEELKEFLQCA-RNLK-GAILCVISFH 239 Query: 252 SLEDRLVKKFFASRSGKVMA---VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SLED LVK F + + SN H A+ + +TKK + P+ E++ NRRSRS Sbjct: 240 SLEDSLVKNAFKDYAKNCICDPLSFKCACSNNH-ALGEILTKKPITPSPEEIKNNRRSRS 298 Query: 309 AKLR 312 AK+R Sbjct: 299 AKMR 302 >gi|261419308|ref|YP_003252990.1| S-adenosyl-methyltransferase MraW [Geobacillus sp. Y412MC61] gi|297530722|ref|YP_003671997.1| S-adenosyl-methyltransferase MraW [Geobacillus sp. C56-T3] gi|319766124|ref|YP_004131625.1| S-adenosyl-methyltransferase MraW [Geobacillus sp. Y412MC52] gi|261375765|gb|ACX78508.1| S-adenosyl-methyltransferase MraW [Geobacillus sp. Y412MC61] gi|297253974|gb|ADI27420.1| S-adenosyl-methyltransferase MraW [Geobacillus sp. C56-T3] gi|317110990|gb|ADU93482.1| S-adenosyl-methyltransferase MraW [Geobacillus sp. Y412MC52] Length = 310 Score = 190 bits (482), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 118/303 (38%), Positives = 179/303 (59%), Gaps = 11/303 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H VLL++ + LN P + +D T G GG+S S + A D+D A+ +E Sbjct: 4 HTTVLLKEAVDGLNIRPDGIYVDCTLGGGGHSEYLLSRLSARGKLFAFDQDEAAIMHARE 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + Y Q F LQ+ + K VDGV+FDLGVSS Q+D +RGFS+Q PL Sbjct: 64 RLARYGRQVQFVHRNFRFLQEELSALGVKSVDGVLFDLGVSSPQLDEPERGFSYQHDAPL 123 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM ++A+++VN+ ++L RI GEEK + ++A I + R++ P +TT +L Sbjct: 124 DMRMDRKQRLTAAEIVNRWPYEELVRIFFRYGEEKFSKQVARKIEEVRRTRPIKTTGELV 183 Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I++ + ++ + HPA R FQALRI VN+E+E + L A + L +GG + V++FH Sbjct: 184 DVIKEAIPAPARRSGGHPAKRIFQALRIAVNDELEAFREALEQAIELLASGGRVSVITFH 243 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+ K+ F AS S + ++P + P V + ITKK +VP++E++ NRR+RSA Sbjct: 244 SLEDRICKETFKKASESPPLPPGLPVLPDDYRP-VLKIITKKPIVPSEEELERNRRARSA 302 Query: 310 KLR 312 KLR Sbjct: 303 KLR 305 >gi|145641287|ref|ZP_01796867.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae R3021] gi|145274124|gb|EDK13990.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae 22.4-21] Length = 321 Score = 190 bits (482), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 128/318 (40%), Positives = 178/318 (55%), Gaps = 30/318 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76 H+ VLL + + L + +D TFG GG+SR S S +IA+DRDP A++ E Sbjct: 12 HITVLLHEAVNGLALKENGIYIDGTFGRGGHSRFILSQLSSNSRLIAVDRDPRAIA---E 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +F + +FS + + + DK +DG++ DLGVSS Q+D +RGFSF K G Sbjct: 69 AHKIQDSRFQIEHNSFSHIPE-ICDKLNLVGKIDGILLDLGVSSPQLDEAERGFSFMKDG 127 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP------ 184 PLDMRM + G+SA + + Q +++DLT +L GEE+ A RIA AIV +SA Sbjct: 128 PLDMRMDTTQGLSAEEWLKQVSIEDLTWVLKTFGEERFAKRIATAIVDFNKSAVKNGTEF 187 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 T L+ LI + V F K+ HPATRSFQA+RIF+N+E++EL L SA L G Sbjct: 188 LSRTSQLAELISQAVPF-KDKHKHPATRSFQAIRIFINSELDELESLLNSALDMLAPEGR 246 Query: 245 LIVVSFHSLEDRLVKKFFASRSG-----KVMAVRH-MIPSNAHPAVFQSITKKVVVPTQE 298 L ++SFHSLEDR+VK F +S K + +R I N I K + P+ Sbjct: 247 LSIISFHSLEDRMVKHFMKKQSKGEDIPKGLPLREDQIQRNQK----LRIIGKAIQPSDA 302 Query: 299 DVAFNRRSRSAKLRAGMR 316 ++ N RSRSA LR R Sbjct: 303 EIQANPRSRSAILRVAER 320 >gi|212639664|ref|YP_002316184.1| putative S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Anoxybacillus flavithermus WK1] gi|263446761|sp|B7GGJ0|RSMH_ANOFW RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|212561144|gb|ACJ34199.1| Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Anoxybacillus flavithermus WK1] Length = 313 Score = 190 bits (482), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 117/314 (37%), Positives = 176/314 (56%), Gaps = 16/314 (5%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 M+S HH V VLL++ + LN +D T G G+S S + A D Sbjct: 1 MTSLFHH-----VTVLLKETVDGLNIKKDGTYVDCTLGGAGHSEYLLSQLSPEGRLFAFD 55 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGD 122 +D A+ Q+ + Y+ QF++ ++ F L+ + GV DG++FDLGVSS Q+D + Sbjct: 56 QDDIAIRHAQQRLERYRGQFTIIKSNFRYLKQQLALYGVHEVDGILFDLGVSSPQLDMPE 115 Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFS+Q PLDMRM ++A DVVN + L +I GEEK + IA I + R+ Sbjct: 116 RGFSYQHEAPLDMRMDREQTLTAYDVVNTWPYEQLVKIFFQYGEEKFSKAIARKIEQTRK 175 Query: 182 SAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 P +TT +L+ +I++ + ++ HPA R FQA+RI VN+E+ + + A LK Sbjct: 176 QKPIETTTELAEVIKEAIPAPARRTGGHPAKRVFQAIRIAVNDELRAFEEAIEQAIDLLK 235 Query: 241 AGGLLIVVSFHSLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 GG + V++FHSLEDR+ K F AS + + +IP P + + ITKK +VP++E Sbjct: 236 PGGRISVITFHSLEDRICKIAFKQASETPHLPPGLPIIPDEYKPKL-KIITKKPIVPSEE 294 Query: 299 DVAFNRRSRSAKLR 312 ++ N R+RSAKLR Sbjct: 295 ELQHNHRARSAKLR 308 >gi|229162854|ref|ZP_04290811.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus R309803] gi|228620736|gb|EEK77605.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus R309803] Length = 310 Score = 190 bits (482), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 115/303 (37%), Positives = 173/303 (57%), Gaps = 11/303 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HV VLL++ + L+ PG +D T G GG+S G +IA D+D A+ +E Sbjct: 4 HVTVLLKETVDGLDIKPGGTYVDCTLGGGGHSSYLLSQLTDGGKLIAFDQDEIAIQNAKE 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 Y EQF ++ F L + + + G VDG++FDLGVSS Q+D +RGFS+ PL Sbjct: 64 KFASYGEQFVTVKSNFRYLSEKLQELGIAEVDGILFDLGVSSPQLDTPERGFSYHHDAPL 123 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM ++A DVVN + + L RI GEEK + +IA I R++ +TT +L Sbjct: 124 DMRMDQDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTGELV 183 Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 LI++ + ++ HPA R FQA+RI VN+E++ + L SA +K GG + V++FH Sbjct: 184 ELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAISMVKPGGRISVITFH 243 Query: 252 SLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+ K F S + ++ +IP P + + IT+K ++P+ ++ N R+RSA Sbjct: 244 SLEDRICKTTFKRNSTTPQLPPGLPIIPEEFKPKL-KLITRKPILPSDIELEENNRARSA 302 Query: 310 KLR 312 KLR Sbjct: 303 KLR 305 >gi|297559864|ref|YP_003678838.1| S-adenosyl-methyltransferase MraW [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844312|gb|ADH66332.1| S-adenosyl-methyltransferase MraW [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 357 Score = 190 bits (482), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 111/307 (36%), Positives = 176/307 (57%), Gaps = 10/307 (3%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74 HVPV+L++++ LL PA PG V++D T G GG+S + + G ++ +DRD A+ Sbjct: 45 HVPVMLDRIVELLAPALERPGAVLVDGTLGLGGHSEALLRACPGMRLVGVDRDTTALERS 104 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y ++ A +S + + + G V+ DLGVSS Q+D DRGF++ Sbjct: 105 AARLAPYADRTHFVHAVYSDIPRALDEAGAAEADAVLLDLGVSSPQLDETDRGFAYAHDA 164 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM ++A++VVN V +LTR+L GEE+ ASR+A AI ++R AP ++T+ Sbjct: 165 PLDMRMDRDQSLTAAEVVNTYPVAELTRVLRTYGEERFASRVARAIERQRAQAPIESTRA 224 Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ L+++ + ++ HPA R+FQ LRI VN E+ L + L +A L GG + V+S Sbjct: 225 LAELVREAIPAATRRTGGHPAKRAFQGLRIEVNAELSILERALPAAIARLAGGGRVAVLS 284 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 +HSLEDR+ K+ A+ + +P + +T+ +PT E+ N R++SA Sbjct: 285 YHSLEDRMTKRALAALATDTTPADLPVPLPERQPELRLLTRGAELPTDEENERNPRAQSA 344 Query: 310 KLRAGMR 316 +LRA R Sbjct: 345 RLRAAER 351 >gi|188997242|ref|YP_001931493.1| S-adenosyl-methyltransferase MraW [Sulfurihydrogenibium sp. YO3AOP1] gi|262825725|sp|B2V5J5|RSMH_SULSY RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|188932309|gb|ACD66939.1| S-adenosyl-methyltransferase MraW [Sulfurihydrogenibium sp. YO3AOP1] Length = 293 Score = 190 bits (482), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 110/305 (36%), Positives = 182/305 (59%), Gaps = 22/305 (7%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76 +H VL ++V+ G+V +DAT G GG+S K N+ I LD+D +A+ +E Sbjct: 3 EHYSVLHKEVLEFSKLIEGEVFVDATVGGGGHSYLILKQNLNLKLIGLDKDDYALKVAKE 62 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +++++++ +L +++F L + K ++G++FD GVS+ Q+ +RGFSFQ+ L Sbjct: 63 RLKEFEDRITLVKSSFKDLDKVLQSLQIKEINGILFDFGVSTFQLKL-ERGFSFQREEFL 121 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + ++A D+VN +DL I+ GEEK AS+IA +IV+ R+ +TT++L+ Sbjct: 122 DMRMDTTQKLTAYDIVNYYREQDLYNIIKTYGEEKFASKIAKSIVEYRKKKKIETTKELA 181 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++ + + ++ +IHPATR+FQA+RI VNNE++++ +GL A L G+++ +SFH Sbjct: 182 DIVYRCYPPNLRHGKIHPATRTFQAIRIEVNNELKDIEEGLEKAINLLAKNGIIMAISFH 241 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+VK +M + +TKK + P+ E++ N SRSAKL Sbjct: 242 SLEDRIVK--------------NMFKKYKELKFLEILTKKPITPSDEEIKENPASRSAKL 287 Query: 312 RAGMR 316 R G R Sbjct: 288 RVGRR 292 >gi|295839424|ref|ZP_06826357.1| S-adenosyl-methyltransferase [Streptomyces sp. SPB74] gi|295827469|gb|EFG65411.1| S-adenosyl-methyltransferase [Streptomyces sp. SPB74] Length = 312 Score = 190 bits (482), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 112/291 (38%), Positives = 171/291 (58%), Gaps = 12/291 (4%) Query: 21 VPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQ 75 +PV+L + + LL PA PG V++D T G GG+S + + ++ALDRD A+ Sbjct: 1 MPVMLRRCLDLLGPALAEPGAVVVDCTLGLGGHSEALLSTFPAARLVALDRDKEALRLAG 60 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + + E+ L A + +L D + G V GV+FDLGVSSMQ+D RGF++ + P Sbjct: 61 ERLAPFGERALLAHAVYDELPDVLERLGIPRVQGVLFDLGVSSMQLDEAGRGFAYAQDAP 120 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G+SA++V+N +L RIL GEEKQA RI A+V+ R+ PF + L Sbjct: 121 LDMRMDQSAGMSAAEVLNTYPPGELVRILRTYGEEKQARRIVSAVVREREKEPFTRSARL 180 Query: 192 SSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 LI++ + +K +PA R+FQALRI VN E+ L + + +A +L GG + V+++ Sbjct: 181 VELIREALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVNSLAVGGRIAVLAY 240 Query: 251 HSLEDRLVKKFFAS-RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300 HSLEDRLVK+ ++ +G ++P P + +T+ +P +E+V Sbjct: 241 HSLEDRLVKQVLSTGATGTAPPGLPVVPERYQPR-LKLLTRGAELPAEEEV 290 >gi|167630120|ref|YP_001680619.1| s-adenosyl-methyltransferase mraw [Heliobacterium modesticaldum Ice1] gi|263456105|sp|B0TGB2|RSMH_HELMI RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|167592860|gb|ABZ84608.1| s-adenosyl-methyltransferase mraw [Heliobacterium modesticaldum Ice1] Length = 313 Score = 190 bits (482), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 120/304 (39%), Positives = 183/304 (60%), Gaps = 10/304 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+PVLL +V+ +L P P V LD T G GG+S + + S VI LD+DP A++ Sbjct: 5 HIPVLLHQVLEVLKPRPEGVYLDGTVGGGGHSAAILQKLSGRGRVIGLDQDPAALAAAGR 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + ++ +L ++ F + V + G +DG++ D+GVSS Q+D +RGF+++ P Sbjct: 65 KLASFGDRVTLVRSNFRHIGAVVAELGLTGKIDGILLDIGVSSHQLDEAERGFTYRMDAP 124 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ S ++AS ++N+A ++ RIL GEE+ A RIA IVKRR P + T +L Sbjct: 125 LDMRMNPESALTASKLLNEAPEGEIARILRDYGEERWAKRIAQFIVKRRALQPLERTGEL 184 Query: 192 -SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 + ++ HPA R+FQALRI VN+E+ L + L +A +AL GG L V+SF Sbjct: 185 VDIIRAAIPAAARQEGGHPAKRTFQALRIAVNDELGALEEALPAALEALAPGGRLAVISF 244 Query: 251 HSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK FFA ++ G + + + + + ITKK +V + E++ N R++SA Sbjct: 245 HSLEDRIVKSFFAEQARGCLCPPDFPVCACGNRPKVKIITKKPLVGSDEEMRANPRAQSA 304 Query: 310 KLRA 313 KLRA Sbjct: 305 KLRA 308 >gi|146281460|ref|YP_001171613.1| S-adenosyl-methyltransferase MraW [Pseudomonas stutzeri A1501] gi|145569665|gb|ABP78771.1| S-adenosyl-methyltransferase MraW [Pseudomonas stutzeri A1501] Length = 293 Score = 190 bits (482), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 115/284 (40%), Positives = 172/284 (60%), Gaps = 16/284 (5%) Query: 41 LDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD 97 LD TFG GG+SR + +G N ++ D+DP A++ GQ + +F + Q +F++L D Sbjct: 8 LDGTFGRGGHSRLLLQQLGPNGQLLGFDKDPLAIATGQ-ALAAEDGRFVVVQRSFAELGD 66 Query: 98 YVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQAN 152 V +G V G++ DLGVSS Q+D RGFSF GPLDMRM S G+SA++ + A+ Sbjct: 67 EVAQRGWTGAVSGILLDLGVSSPQLDDPIRGFSFLNDGPLDMRMDPSRGVSAAEWIASAD 126 Query: 153 VKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATR 212 ++ R+ GEE+ A R+A A+V+RR APF+ T DL+ ++ + + PATR Sbjct: 127 EDEIARVFKDYGEERFAKRMARAVVQRRAEAPFERTADLAKVLTDANPAWEKGK-SPATR 185 Query: 213 SFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRS-GKVMA 271 +FQ LRI +NNE+ +L +GL +A AL+ GG L+V+SFHSLEDR+VK+F + G+ Sbjct: 186 AFQGLRIHINNELGDLERGLDAALDALEVGGRLVVISFHSLEDRIVKQFMRRHAKGEADK 245 Query: 272 VRHMIPSNAHPAVFQSITKKVVVP---TQEDVAFNRRSRSAKLR 312 + +P P F+ K + P ++ +V N RSRSA +R Sbjct: 246 LPRDLP--IIPKAFEPRLKLIGKPQYASEAEVKANPRSRSAVMR 287 >gi|333027784|ref|ZP_08455848.1| putative S-adenosyl-methyltransferase [Streptomyces sp. Tu6071] gi|332747636|gb|EGJ78077.1| putative S-adenosyl-methyltransferase [Streptomyces sp. Tu6071] Length = 312 Score = 190 bits (482), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 110/291 (37%), Positives = 170/291 (58%), Gaps = 12/291 (4%) Query: 21 VPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQ 75 +PV+L + + LL PA PG V++D T G GG+S + + ++ALDRD A+ Sbjct: 1 MPVMLRRCLDLLGPALAEPGAVVVDCTLGLGGHSEALLSTFPAARLVALDRDKEALRLAG 60 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + + E+ L A + +L D + G V G++FDLGVSSMQ+D DRGF++ + P Sbjct: 61 ERLAPFGERAMLAHAVYDELPDVLDRLGIPRVQGILFDLGVSSMQLDEADRGFAYAQDAP 120 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM +G+SA++V+N +L RIL GEEKQA RI A+V+ R+ PF + L Sbjct: 121 LDMRMDQTAGLSAAEVLNTYPPGELVRILRTYGEEKQARRIVSAVVREREKEPFARSARL 180 Query: 192 SSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 LI++ + +K +PA R+FQALRI VN E+ L + + +A L GG + V+++ Sbjct: 181 VELIREALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVNTLAVGGRIAVLAY 240 Query: 251 HSLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDV 300 HSLEDRLVK+ ++ + ++P P + +T+ +P +E+V Sbjct: 241 HSLEDRLVKQVLSTGATSTAPPGLPVVPERYQPR-LKLLTRGAELPAEEEV 290 >gi|68249679|ref|YP_248791.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae 86-028NP] gi|148826257|ref|YP_001291010.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae PittEE] gi|229846161|ref|ZP_04466273.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae 7P49H1] gi|81335891|sp|Q4QLG6|RSMH_HAEI8 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263456014|sp|A5UCX6|RSMH_HAEIE RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|68057878|gb|AAX88131.1| predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Haemophilus influenzae 86-028NP] gi|148716417|gb|ABQ98627.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae PittEE] gi|229811165|gb|EEP46882.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae 7P49H1] Length = 321 Score = 190 bits (482), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 128/318 (40%), Positives = 184/318 (57%), Gaps = 30/318 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQE 76 H+ VLL + + L + +D TFG GG+SR ++ SN +IA+DRDP A++ + Sbjct: 12 HITVLLHEAVNGLALKENGIYIDGTFGRGGHSRFILSQLSSNGRLIAVDRDPRAIAEAHK 71 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++D + F + +FS + + + DK +DG++ DLGVSS Q+D +RGFSF K G Sbjct: 72 -IQDLR--FQIEHNSFSHIPE-ICDKLNLVGKIDGILLDLGVSSPQLDEAERGFSFMKDG 127 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ- 189 PLDMRM + G+SA + + Q +++DLT +L GEE+ A RIA AIV +SA +T+ Sbjct: 128 PLDMRMDTTQGLSAEEWLKQVSIEDLTWVLKTFGEERFAKRIATAIVDFNKSAVKNSTEF 187 Query: 190 -----DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 L+ LI + V F K+ HPATRSFQA+RIF+N+E++EL L SA L G Sbjct: 188 LSRTSQLAELISQAVPF-KDKHKHPATRSFQAIRIFINSELDELESLLNSALDMLAPEGR 246 Query: 245 LIVVSFHSLEDRLVKKFFASRSG-----KVMAVRH-MIPSNAHPAVFQSITKKVVVPTQE 298 L ++SFHSLEDR+VK F +S K + +R I N I K + P+ Sbjct: 247 LSIISFHSLEDRMVKHFMKKQSKGEDIPKGLPLREDQIQRNQK----LRIIGKAIQPSDA 302 Query: 299 DVAFNRRSRSAKLRAGMR 316 ++ N RSRSA LR R Sbjct: 303 EIQANPRSRSAILRVAER 320 >gi|54023726|ref|YP_117968.1| S-adenosyl-methyltransferase MraW [Nocardia farcinica IFM 10152] gi|115311586|sp|Q5YYY7|RSMH_NOCFA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|54015234|dbj|BAD56604.1| putative methyltransferase [Nocardia farcinica IFM 10152] Length = 324 Score = 190 bits (482), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 115/310 (37%), Positives = 176/310 (56%), Gaps = 13/310 (4%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74 HVPVLLE+ LL PA PG V +DAT G GG++ F G ++ LDRD A+ Sbjct: 10 HVPVLLERADELLGPALTEPGAVYVDATLGLGGHAEHFLTRYPGLRLVGLDRDTEALRLA 69 Query: 75 QETMRDYKEQFSLFQATFSQLQDYV------PDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 E + + E+ +L + + D + P V ++ DLGVSSMQ+D +RGF++ Sbjct: 70 GERLAPFAERITLVHTRYDGIADALGQAGLPPTGSVSAILMDLGVSSMQLDEAERGFAYS 129 Query: 129 KSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 PLDMRM SGI+A+DV+N + DL R+L GEE+ A +IA +++RR PF+T Sbjct: 130 VDAPLDMRMDPTSGITAADVLNTYSHGDLARVLKNYGEERFAGKIASEVIRRRAHKPFET 189 Query: 188 TQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 + +L L+ T+ ++ HPA R+FQALR+ VN E++ L L +A AL+ GG ++ Sbjct: 190 SGELVELLYATIPAAARRTGGHPAKRTFQALRVEVNGELDSLRAALPAALDALRVGGRIV 249 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+S+ SLEDR+VK+ A+R+ V + F+ +T+ + ++A N R+ Sbjct: 250 VMSYQSLEDRVVKQELAARTSSRTPVDLPVELPGMGPEFRLLTRGAEKAGEREIAENPRA 309 Query: 307 RSAKLRAGMR 316 ++RA R Sbjct: 310 APVRMRAAER 319 >gi|308062033|gb|ADO03921.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori Cuz20] Length = 310 Score = 190 bits (482), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 120/304 (39%), Positives = 180/304 (59%), Gaps = 20/304 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVSCGQET 77 H VLL++V+ P V++D T G GG+S++ K +I +D+D FA +E Sbjct: 8 HQSVLLQEVLQAFTPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFAQEIAKER 67 Query: 78 MRDYKEQFSLFQATFSQ-----LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 ++ ++ +++L F++ L+ + +K + GV+ DLGVSS+Q+D +RGF+F S Sbjct: 68 LKAFEGRYNLLSGGFAKRFKEALETH--NKEIKGVLVDLGVSSLQLDDDNRGFNFH-SHA 124 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM G ++A V+N V L +I GE K+ +IAH I +RR PF+ +DL Sbjct: 125 LDMRMDLEGDLNAQKVINSYPVVALEKIFKDYGEIKEYKKIAHKIAERRAKKPFKDAKDL 184 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 S + SKN +IHPAT FQA+RI VN+E+EEL + L+ A + LK G +L V+SFH Sbjct: 185 SDFLSS---LSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCA-RNLK-GAILCVISFH 239 Query: 252 SLEDRLVKKFFASRSGKVM---AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SLED LVK F + + + SN H A+ + +TKK + P+ E++ NRRSRS Sbjct: 240 SLEDALVKNAFKDYAKNCICDPSSFKCACSNNH-ALGEILTKKPITPSPEEIKNNRRSRS 298 Query: 309 AKLR 312 AK+R Sbjct: 299 AKMR 302 >gi|295706376|ref|YP_003599451.1| S-adenosyl-methyltransferase MraW [Bacillus megaterium DSM 319] gi|294804035|gb|ADF41101.1| S-adenosyl-methyltransferase MraW [Bacillus megaterium DSM 319] Length = 311 Score = 190 bits (482), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 118/305 (38%), Positives = 177/305 (58%), Gaps = 13/305 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 +H VLL++ LN P V +D T G G+S K S +IA D+D A++ + Sbjct: 3 NHTTVLLKEAAEGLNIKPDGVYVDCTLGGAGHSEYIVKQLSEKGKLIAFDQDDVALANAK 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + Y ++ L ++ F L++ + + G VDGV+FDLGVSS Q+D +RGFSF P Sbjct: 63 EKLAPYLDRVILIKSNFRYLKEQLMEHGIEEVDGVLFDLGVSSPQLDTPERGFSFHHDAP 122 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S SA +VVN+ + L +I GEEK + +IA I R+S P +TT +L Sbjct: 123 LDMRMDQNSMFSAYNVVNEWPYEKLVKIFFQYGEEKFSKQIARKIEAYRESKPIETTLEL 182 Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 LI+ + ++ HPA R FQA+RI VN+E++ + A +K GG + V++F Sbjct: 183 VDLIKDGIPAPARRTGGHPAKRIFQAIRIAVNDELQVFEDAIEQAMDVIKKGGRVSVITF 242 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH---MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 HSLEDR+ K F + S V + H +IP P + + IT+K ++P++E++ N+R+R Sbjct: 243 HSLEDRICKVAFKNAS-TVPQLPHGLPIIPEEFKPKM-KVITRKPILPSEEEIEENKRAR 300 Query: 308 SAKLR 312 SAKLR Sbjct: 301 SAKLR 305 >gi|120555371|ref|YP_959722.1| S-adenosyl-methyltransferase MraW [Marinobacter aquaeolei VT8] gi|263456394|sp|A1U3G6|RSMH_MARAV RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|120325220|gb|ABM19535.1| S-adenosyl-methyltransferase MraW [Marinobacter aquaeolei VT8] Length = 319 Score = 190 bits (482), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 119/309 (38%), Positives = 177/309 (57%), Gaps = 15/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQE 76 H VLL+ + L +DATFG GG+SR G ++ +D+DP A++ +E Sbjct: 15 HRSVLLDAAVDYLVTDENGRYVDATFGRGGHSRLILGKLGQGGQLLGIDKDPEAIAVARE 74 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + +F + +F++L + +G VDGV+ DLGVSS Q+D RGFSF + GPL Sbjct: 75 -LASGDSRFQWYHGSFAELDLALERQGWSQVDGVLMDLGVSSPQLDDASRGFSFMRDGPL 133 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ SA+ + +A+ +++ ++ GEE+ + RIA +V+RRQ P +TT+ L+ Sbjct: 134 DMRMNPQQEPSAAQWLAEADEREIADVIWRYGEERFSRRIARLVVERRQEQPIETTRQLA 193 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 L+ + V K HPATR+FQA+RIF+N E+E+L GL +A L GG L+V+SFHS Sbjct: 194 ELVAEAVP-KKEKHKHPATRAFQAIRIFINRELEDLEAGLAAAVDRLAPGGRLVVISFHS 252 Query: 253 LEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDRLVK+F + G + + + + FQ I K QE + N R+RSA Sbjct: 253 LEDRLVKRFMRDLARGPKLPKGIPVTAEQEESGFQLIGKASKANEQE-ITENVRARSAV- 310 Query: 312 RAGMRTVER 320 MR +ER Sbjct: 311 ---MRVLER 316 >gi|317484855|ref|ZP_07943747.1| MraW methylase [Bilophila wadsworthia 3_1_6] gi|316923901|gb|EFV45095.1| MraW methylase [Bilophila wadsworthia 3_1_6] Length = 355 Score = 190 bits (482), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 115/304 (37%), Positives = 171/304 (56%), Gaps = 11/304 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+ VLL + + L P G LD T G GG+S + + + LDRD A+ + Sbjct: 8 HISVLLNEAVDALAPKAGGRYLDGTVGMGGHSFAIMERTGGEGFLCGLDRDTQALELARI 67 Query: 77 TMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + ++ L +S+ + D + VDG + D+GVSS+QID +RGFSF GPL Sbjct: 68 RLAPFGDRVHLVHTRYSEFEAALDGIGWDAVDGALIDIGVSSLQIDSAERGFSFSSDGPL 127 Query: 134 DMRMS--CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 DMRM + S +VN+A ++DL I+ GE+ QA RIA AIV+ R P +TT +L Sbjct: 128 DMRMDRDSEELPVSRLVNRAKLEDLKDIIERYGEDPQAGRIARAIVEARVRKPIETTGEL 187 Query: 192 SSLIQKT--VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 ++L+++ + R HPATR+FQALR+ VN+EI EL + L + LK GG + V+S Sbjct: 188 AALVERAYPAAWRAKARNHPATRTFQALRMAVNDEIGELERFLDTILGRLKPGGRVAVIS 247 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ-SITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK + + + +H+ H A +T K V P++ ++ N R+ S Sbjct: 248 FHSLEDRVVKHRMKAWAQGCICPKHIPVCVCHHAPEALLVTPKPVCPSERELMLNPRAGS 307 Query: 309 AKLR 312 AKLR Sbjct: 308 AKLR 311 >gi|148980580|ref|ZP_01816127.1| S-adenosyl-methyltransferase [Vibrionales bacterium SWAT-3] gi|145961163|gb|EDK26479.1| S-adenosyl-methyltransferase [Vibrionales bacterium SWAT-3] Length = 316 Score = 190 bits (482), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 121/309 (39%), Positives = 174/309 (56%), Gaps = 20/309 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H+ VLL + I L P +D TFG GG+SR+ K+G N + ++DRDP A++ Q+ Sbjct: 7 HISVLLNESIDGLAIKPDGTYIDGTFGRGGHSRTILSKLGENGRLFSIDRDPQAIAEAQK 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +F++ FS + +Y VDGV+ DLGVSS Q+D +RGFSF K GP Sbjct: 67 I---DDPRFTIIHGPFSGMAEYAERYDLVGKVDGVLLDLGVSSPQLDDAERGFSFMKDGP 123 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV---KRRQSAPFQTT 188 LDMRM SGI S + +A++ D+T ++ GE+K A RIA I+ + ++ P T Sbjct: 124 LDMRMDPTSGIPVSQWLLEADLDDITWVIREFGEDKHARRIAKGIIAYQENEENEPLTRT 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ LI S + HPATR+FQA RI++N+E+EE+ L+ A L G L V+ Sbjct: 184 GQLAKLISDVAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAASILAPEGRLSVI 243 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH--PAVFQSITK---KVVVPTQEDVAFN 303 SFHSLEDR+VK+F S + V H +P A+ + K K + P++ +V N Sbjct: 244 SFHSLEDRMVKRFIRKES-QGPQVPHGLPLTEEQIKALGSADLKPVGKAIKPSKGEVDEN 302 Query: 304 RRSRSAKLR 312 RSRS+ LR Sbjct: 303 TRSRSSVLR 311 >gi|297379907|gb|ADI34794.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori v225d] Length = 308 Score = 190 bits (482), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 121/304 (39%), Positives = 179/304 (58%), Gaps = 20/304 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVSCGQET 77 H VLL++V+ P V++D T G GG+S++ K +I +D+D FA +E Sbjct: 8 HQSVLLQEVLQAFAPLEEGVLIDCTLGLGGHSKAILSQKPHLKLIGIDKDKFAQEIAKER 67 Query: 78 MRDYKEQFSLFQATFSQ-----LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 ++ ++ +++L F++ L+ + DK + GV+ DLGVSS+Q+D +RGF+F S Sbjct: 68 LKAFEGRYNLLSGGFAKRFKEALETH--DKEIKGVLVDLGVSSLQLDDDNRGFNFH-SHA 124 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM G ++A V+N V L +I GE K+ +IAH I +RR PF+ +DL Sbjct: 125 LDMRMDLEGDLNAQKVINSYPVVALEKIFKDYGEIKEYKKIAHKIAERRAKKPFKDAKDL 184 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 S + SKN +IHPAT FQA+RI VN E+EEL + L+ A + LK G +L V+SFH Sbjct: 185 SDFLSS---LSKNKKIHPATLVFQAVRIEVNRELEELKEFLQCA-RNLK-GAILCVISFH 239 Query: 252 SLEDRLVKKFFASRSGKVM---AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SLED LVK F + + + SN H A+ + +TKK + P+ E++ NRRSRS Sbjct: 240 SLEDALVKNAFKDYAKNCVCDPSSFKCACSNNH-ALGEILTKKPITPSPEEIKNNRRSRS 298 Query: 309 AKLR 312 AK+R Sbjct: 299 AKMR 302 >gi|241668885|ref|ZP_04756463.1| S-adenosylmethionine-dependent methyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254877417|ref|ZP_05250127.1| S-adenosyl-methyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254843438|gb|EET21852.1| S-adenosyl-methyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 305 Score = 190 bits (482), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 120/304 (39%), Positives = 177/304 (58%), Gaps = 16/304 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN-VIALDRDPFAVSCGQET 77 H VLL++ IA LN P + +DATFG GG+S++ K+ S +IA D+D A+ Sbjct: 2 HFSVLLQESIADLNINPEGIYIDATFGRGGHSKAILDKLTSGRLIAFDKDLDAIDYATHN 61 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ + F + A+F+ + DY VDG++ DLGVSS Q+D +RGFSF GPL Sbjct: 62 FQN--DNFEIVHASFTYIYDYCLQHNLLGEVDGIIMDLGVSSPQLDNANRGFSFTHDGPL 119 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTTQDL 191 DMRM S G++AS + + +V +LT I + GEE+ A +IA I ++ TT L Sbjct: 120 DMRMDISKGLTASQALEELSVDELTYIFKVYGEERFAKKIALRIKDYIAENGSITTTHQL 179 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI+ T+ K + +PATR FQALRI+VN+E+++L L S +K GG + +SFH Sbjct: 180 AELIRATI--GKREKKNPATRCFQALRIYVNDELKDLEILLESILDVIKKGGRVAAISFH 237 Query: 252 SLEDRLVKKFFASR---SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SLEDR+VK+ F S + + M+P + + ITKK Q++++ N RSRS Sbjct: 238 SLEDRIVKQKFTSLINPKQETNRIAKMLPQDNSQVKMKWITKK-AKANQDELSQNVRSRS 296 Query: 309 AKLR 312 A LR Sbjct: 297 AILR 300 >gi|319776629|ref|YP_004139117.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Haemophilus influenzae F3047] gi|329124142|ref|ZP_08252689.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Haemophilus aegyptius ATCC 11116] gi|317451220|emb|CBY87453.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Haemophilus influenzae F3047] gi|327467567|gb|EGF13065.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Haemophilus aegyptius ATCC 11116] Length = 321 Score = 190 bits (482), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 128/318 (40%), Positives = 180/318 (56%), Gaps = 30/318 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQE 76 H+ VLL + + L + +D TFG GG+SR ++ SN +IA+DRDP A++ E Sbjct: 12 HITVLLHEAVNGLALKENGIYIDGTFGRGGHSRFILSQLSSNGRLIAVDRDPRAIA---E 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +F + +FS + + + DK +DG++ DLGVSS Q+D +RGFSF K G Sbjct: 69 AHKIQDSRFQIEHNSFSHIPE-ICDKLNLVGKIDGILLDLGVSSPQLDEAERGFSFMKDG 127 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP------ 184 PLDMRM + G+SA + + Q +++DLT +L GEE+ A RIA AIV +SA Sbjct: 128 PLDMRMDTTQGLSAEEWLKQVSIEDLTWVLKTFGEERFAKRIATAIVDFNKSAVKNGTEF 187 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 T L+ LI + V F K+ HPATRSFQA+RIF+N+E++EL L SA L G Sbjct: 188 LSRTSQLAELISQAVPF-KDKHKHPATRSFQAIRIFINSELDELESLLNSALDMLAPEGR 246 Query: 245 LIVVSFHSLEDRLVKKFFASRSG-----KVMAVRH-MIPSNAHPAVFQSITKKVVVPTQE 298 L ++SFHSLEDR+VK F +S K + +R I N I K + P+ Sbjct: 247 LSIISFHSLEDRMVKHFMKKQSKGEDIPKGLPLREDQIQRNQK----LRIIGKAIQPSDA 302 Query: 299 DVAFNRRSRSAKLRAGMR 316 ++ N RSRSA LR R Sbjct: 303 EIQANPRSRSAILRVAER 320 >gi|304437331|ref|ZP_07397290.1| S-adenosyl-methyltransferase MraW [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369587|gb|EFM23253.1| S-adenosyl-methyltransferase MraW [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 313 Score = 190 bits (482), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 125/302 (41%), Positives = 164/302 (54%), Gaps = 10/302 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 HV VL E+V+A LN PG + +DAT G G+++ S +I +D+D A++ +E Sbjct: 6 HVSVLPEEVVAALNVVPGGIYVDATLGGAGHAQRIAAQLSEQGRLIGIDQDETAIAAARE 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + D + Q SL + F L + +GV DG +FDLGVSS QID +RGFS+ + PL Sbjct: 66 RLADVRCQVSLVRDNFRHLTAILAAEGVSSVDGALFDLGVSSPQIDTPERGFSYMQDAPL 125 Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM SA DVVN + LT I GEE+ A RIA I K RQ+ P TT DL Sbjct: 126 DMRMDQRARRSAYDVVNTYTAERLTEIFYTYGEERWAKRIASFIEKERQTHPITTTGDLV 185 Query: 193 SLIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++I + V R HPA R FQALRI VN+E+ L L +A AL+ GG L V++FH Sbjct: 186 AVIDRAVPKEVRARGGHPAKRVFQALRIEVNDELGILEGALTAAVDALRIGGRLAVITFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK + + H I H + I K E N R+RSAK Sbjct: 246 SLEDRIVKNTLRRLAQGCICPPHTPICVCGHTPEVRLIGKARAASAAE-CRVNTRARSAK 304 Query: 311 LR 312 LR Sbjct: 305 LR 306 >gi|156741091|ref|YP_001431220.1| S-adenosyl-methyltransferase MraW [Roseiflexus castenholzii DSM 13941] gi|262826161|sp|A7NIA2|RSMH_ROSCS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|156232419|gb|ABU57202.1| S-adenosyl-methyltransferase MraW [Roseiflexus castenholzii DSM 13941] Length = 312 Score = 190 bits (482), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 113/304 (37%), Positives = 170/304 (55%), Gaps = 22/304 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H PVLL + +A L P PG +D T G GG++ + + + ++ +D DP A++ Sbjct: 23 HTPVLLTETLAGLQPHPGGWYIDGTVGGGGHAAAILEATAPDGRLLGIDCDPAALAAAAA 82 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + Y E+ +L + +F ++ G V GV+ DLGVSS Q+D +RGFSFQ S PL Sbjct: 83 RLAPYGERVTLVRGSFREIGRLAHKAGFVQVQGVLLDLGVSSYQLDTPERGFSFQASAPL 142 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMR+ ++A+++VN +DL ++ EE+ + RIA AIV+ RQ P TT +L+ Sbjct: 143 DMRLDPDAPMTAANLVNDLPERDLADLIFRYSEERGSRRIARAIVEARQRRPITTTDELA 202 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++ + + + RIHPATR+FQALRI VN+E+ L L + L GG + +++FHS Sbjct: 203 EIVSRALG-GRRGRIHPATRTFQALRIAVNDELTSLDAALPQIVELLVVGGRMAIITFHS 261 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK+F + A + IT+K V + E+ N RSRSAKLR Sbjct: 262 LEDRIVKQFMR--------------AEAQAGHLRLITRKPVEASSEEQRINPRSRSAKLR 307 Query: 313 AGMR 316 R Sbjct: 308 VAER 311 >gi|332976270|gb|EGK13132.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Desmospora sp. 8437] Length = 317 Score = 190 bits (482), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 113/309 (36%), Positives = 181/309 (58%), Gaps = 9/309 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQE 76 H V+ E+ + L PG + +D T G G+S ++G + +I LD+D A+ + Sbjct: 4 HETVMREEAVDGLLVRPGGIYVDCTLGGAGHSLLIAERLGKDGILIGLDQDDRALQAASD 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ Q L ++ F +L++ + G VDGV+FD+GVSS Q+D G+RGFS+Q PL Sbjct: 64 RLKGADCQVHLIKSNFRRLEEVLGRLGLDRVDGVLFDIGVSSPQLDEGERGFSYQHDAPL 123 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM G ++A DVVN + +++ IL GEEK + RIA IV+ R P +TT +L+ Sbjct: 124 DMRMDPDGELTARDVVNDWSEEEIAHILFRYGEEKFSRRIARKIVETRSQYPIETTGELA 183 Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++I++ + ++ HPA RSFQA+RI VN+E+ +GL A ++L +GG + V++FH Sbjct: 184 AVIKEGIPAPARRKGPHPARRSFQAIRIAVNDELNAFEEGLEQAVRSLNSGGRVSVITFH 243 Query: 252 SLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+ K+FF ++ G + + + + ITKK + P+ + N R+RSA+ Sbjct: 244 SLEDRICKRFFQEKARGCICPPDFPVCTCGKTPELRIITKKSLQPSAAETGRNPRARSAR 303 Query: 311 LRAGMRTVE 319 LR + E Sbjct: 304 LRIAEKCEE 312 >gi|300871667|ref|YP_003786540.1| S-adenosyl-methyltransferase MraW [Brachyspira pilosicoli 95/1000] gi|300689368|gb|ADK32039.1| S-adenosyl-methyltransferase, MraW [Brachyspira pilosicoli 95/1000] Length = 297 Score = 189 bits (481), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 100/299 (33%), Positives = 169/299 (56%), Gaps = 16/299 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H PV+L+++++ + P + +DAT G GG++++ + V + +RD + +E ++ Sbjct: 7 HTPVMLKEILSFI-PENANIAVDATLGEGGHTKAMLDLNLEVHSFERDDKILEVAKERLK 65 Query: 80 DYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 DYK +F + T+ ++ + + + VD +++DLGVS +RGFSF+ LDMR Sbjct: 66 DYK-KFHYYNNTYDKMLEELNENVIGNVDFMLYDLGVSMFHFKKANRGFSFKDDVKLDMR 124 Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI- 195 + + SA DV+N + K+L R+ GE AS+IA+ IV R+ +T+++L ++I Sbjct: 125 LGINNKSAYDVINSYSEKELERVFREYGEMHNASKIANIIVNERKKKSIETSKELENIIF 184 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 T + +IHPAT FQA+RI VN+E+ L + + + K LK GG+ ++S+HSLED Sbjct: 185 HHTDKAKRFGKIHPATLVFQAIRIEVNDELNILEKSISNISKILKNGGVAAIMSYHSLED 244 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 R+VK+F + +F+ + KV+ PT E++ N SRSAKLR Sbjct: 245 RIVKRFLKDNE----------KTKNKDGIFKLLNSKVITPTNEEIKLNPASRSAKLRVA 293 >gi|284053843|ref|ZP_06384053.1| S-adenosyl-methyltransferase MraW [Arthrospira platensis str. Paraca] Length = 312 Score = 189 bits (481), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 122/311 (39%), Positives = 174/311 (55%), Gaps = 30/311 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQ-- 75 H+PVL ++I L G LDAT G GG+++ + NV A+DRD A++ + Sbjct: 19 HIPVLGRELIEGLAVQEGGHYLDATVGGGGHTKMIFQGAPNVRVTAIDRDLEAIAAAKSM 78 Query: 76 --ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +TM + ++ + FSQ P + DG++ DLGV+S Q+D RGFSF+ GPL Sbjct: 79 LMDTMGNCGDRLQFWHGNFSQYPS-SPSQ-FDGIIADLGVNSHQLDTPGRGFSFRHCGPL 136 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +SA++++N + K L I GEE+ + RIA IV++R PFQTT+ L+ Sbjct: 137 DMRMNPQDPLSAAEIINTWDEKQLADIFYTYGEERLSRRIARQIVQKR---PFQTTEQLA 193 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 I V + RIHPATR FQALRI VN E+ L L +A LK GG + ++SFH Sbjct: 194 GAIANCVPSKYRYGRIHPATRVFQALRIAVNGELSALETFLETAPTWLKPGGRIGIISFH 253 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR VK F RH HP + + +TKK + P ++++ N R+RSAKL Sbjct: 254 SLEDRPVKHGF----------RH------HP-LLKVLTKKPITPQPDEISQNPRARSAKL 296 Query: 312 RAGMRTVERSI 322 R R ++ Sbjct: 297 RLAQRNTNETL 307 >gi|145633140|ref|ZP_01788872.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae 3655] gi|144986366|gb|EDJ92945.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae 3655] Length = 321 Score = 189 bits (481), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 128/318 (40%), Positives = 181/318 (56%), Gaps = 30/318 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQE 76 H+ VLL + + L + +D TFG GG+SR ++ SN +IA+DRDP A+ E Sbjct: 12 HITVLLHEAVNGLALKENGIYIDGTFGRGGHSRFILSQLSSNGRLIAVDRDPRAIV---E 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +F + +FS + + + DK +DG++ DLGVSS Q+D +RGFSF K G Sbjct: 69 AHKIQDSRFQIEHNSFSHIPE-ICDKLNLVGKIDGILLDLGVSSPQLDEAERGFSFMKDG 127 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ- 189 PLDMRM + G+SA + + Q +++DLT +L GEE+ A RIA AIV +SA +T+ Sbjct: 128 PLDMRMDTTQGLSAEEWLKQVSIEDLTWVLKTFGEERFAKRIATAIVDFNKSAVKNSTEF 187 Query: 190 -----DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 L+ LI + V F K+ HPATRSFQA+RIF+N+E++EL L SA L G Sbjct: 188 LSRTSQLAELISQAVPF-KDKHKHPATRSFQAIRIFINSELDELESLLNSALDMLAPEGR 246 Query: 245 LIVVSFHSLEDRLVKKFFASRSG-----KVMAVRH-MIPSNAHPAVFQSITKKVVVPTQE 298 L ++SFHSLEDR+VK F +S K + +R I N I K + P+ Sbjct: 247 LSIISFHSLEDRMVKHFMKKQSKGEDIPKGLPLREDQIQRNQK----LRIIGKAIQPSDA 302 Query: 299 DVAFNRRSRSAKLRAGMR 316 ++ N RSRSA LR R Sbjct: 303 EIQANPRSRSAILRVAER 320 >gi|89074178|ref|ZP_01160677.1| S-adenosyl-methyltransferase [Photobacterium sp. SKA34] gi|89050114|gb|EAR55640.1| S-adenosyl-methyltransferase [Photobacterium sp. SKA34] Length = 315 Score = 189 bits (481), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 122/315 (38%), Positives = 183/315 (58%), Gaps = 23/315 (7%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQ 75 +HV VLL + + L P + +D TFG GG+SR +G N + ++DRDP A++ Q Sbjct: 6 EHVSVLLNESVDGLAIKPDGIYIDGTFGRGGHSRLILSHLGENGRLYSIDRDPQAIAEAQ 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +F + FS ++ Y+ ++ VDGV+ DLGVSS Q+D +RGFSF + G Sbjct: 66 KI---DDPRFEIIHGPFSGMEKYMEERDLIGRVDGVLLDLGVSSPQLDDAERGFSFMRDG 122 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---PFQT 187 PLDMRM SG SA++ + +A D+ +L GEE+ A RIA IV+ R++ P Sbjct: 123 PLDMRMDPTSGQSAAEWLAEAEADDIAWVLKEFGEERFAKRIARGIVEHRENPEKEPLTR 182 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T++L+SLI F K+ HPATRSFQA+RI++N+E++E+ L A L G L V Sbjct: 183 TRELASLIAAVSPF-KDKHKHPATRSFQAIRIYINSELDEIETALNGAVNILAPEGRLSV 241 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH------PAVFQSITKKVVVPTQEDVA 301 +SFHSLEDR+VK+F +S K V +P A +++ K + P+Q+++ Sbjct: 242 ISFHSLEDRMVKRFIRKQS-KGPEVPAGLPLTEEQIKALGSAALKTVG-KAIKPSQDELG 299 Query: 302 FNRRSRSAKLRAGMR 316 +N R+RS+ LR R Sbjct: 300 YNTRARSSVLRLAQR 314 >gi|110800523|ref|YP_696548.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens ATCC 13124] gi|110803229|ref|YP_699148.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens SM101] gi|168206081|ref|ZP_02632086.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens E str. JGS1987] gi|168210772|ref|ZP_02636397.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens B str. ATCC 3626] gi|168215224|ref|ZP_02640849.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens CPE str. F4969] gi|168215494|ref|ZP_02641119.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens NCTC 8239] gi|169343521|ref|ZP_02864520.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens C str. JGS1495] gi|122958788|sp|Q0TP92|RSMH_CLOP1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|123047275|sp|Q0SRV9|RSMH_CLOPS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|110675170|gb|ABG84157.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens ATCC 13124] gi|110683730|gb|ABG87100.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens SM101] gi|169298081|gb|EDS80171.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens C str. JGS1495] gi|170662388|gb|EDT15071.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens E str. JGS1987] gi|170711095|gb|EDT23277.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens B str. ATCC 3626] gi|170713370|gb|EDT25552.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens CPE str. F4969] gi|182382153|gb|EDT79632.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens NCTC 8239] Length = 310 Score = 189 bits (481), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 119/308 (38%), Positives = 176/308 (57%), Gaps = 22/308 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 HV VLL++ I LN + +D T G G+S K S+ +I D+D A+ E Sbjct: 5 HVSVLLDECINALNIKEDGIYVDCTLGGAGHSSEIVKRLSSDGRLIGFDQDKDALKAAGE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++DYK + + F + D + D GVDG++ DLGVSS Q+D G+RGFS+ + PL Sbjct: 65 RLKDYK-NVTYVHSNFYAIYDVLTDLGIDGVDGILMDLGVSSYQLDNGERGFSYMQDAPL 123 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ SA ++VN + ++L RI+ GEEK A RIA IVK R+ +TT +L Sbjct: 124 DMRMNRENEFSAYEIVNTYSEEELYRIIKEYGEEKFAKRIASFIVKNREEKNIETTLELV 183 Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + ++ HPA R+FQA+RI VN E+E +++ + K L GG + +++FH Sbjct: 184 EIIKAAIPAKARREGPHPAKRTFQAIRIEVNKELEIISKTILDGVKKLNKGGRMAIITFH 243 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPS-------NAHPAVFQSITKKVVVPTQEDVAFNR 304 SLEDR+VK F K +A PS N P V + I++K + ++E++ FN Sbjct: 244 SLEDRIVKNTF-----KELANPCTCPSEFPVCVCNRKPEV-KLISRKPIEASKEELEFNP 297 Query: 305 RSRSAKLR 312 RSRSAKLR Sbjct: 298 RSRSAKLR 305 >gi|223984258|ref|ZP_03634404.1| hypothetical protein HOLDEFILI_01698 [Holdemania filiformis DSM 12042] gi|223963789|gb|EEF68155.1| hypothetical protein HOLDEFILI_01698 [Holdemania filiformis DSM 12042] Length = 312 Score = 189 bits (481), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 119/302 (39%), Positives = 178/302 (58%), Gaps = 9/302 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H VLL++ I LN + +D T G GG+S + N + A D D A++ + Sbjct: 4 HYSVLLQESIDALNCQSDGIYVDGTLGRGGHSLEIARRLQNGHLYAFDLDEQALAESAQR 63 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + + + +L +A F+Q+++ + +GV DGVV DLGVSS Q D G+RGFS++ LD Sbjct: 64 LAEVSGRVTLIRANFAQMREELNARGVMSVDGVVMDLGVSSPQFDDGERGFSYRYDARLD 123 Query: 135 MRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM S SA ++VN+ + K+L+ +L GEE + IA IV+ R P TT +L Sbjct: 124 MRMDQSQPRSAWNLVNELDEKELSALLWKYGEESYSRPIARQIVRARTLHPIDTTFELVD 183 Query: 194 LIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+K + N + HPA ++FQALRI VN E+E L GLR+A +K GG + V++FHS Sbjct: 184 VIKKALPAKVLNKKGHPAKQTFQALRIAVNGELESLETGLRAAMSLVKPGGRIAVITFHS 243 Query: 253 LEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 LEDR+VK+ F AS K ++PS F+ +++K ++P +E++A N RS SAK Sbjct: 244 LEDRIVKETFRQASSVEKTDPRIPLLPSQIRQPDFRLVSRKPILPGEEELAENNRSHSAK 303 Query: 311 LR 312 LR Sbjct: 304 LR 305 >gi|148543819|ref|YP_001271189.1| S-adenosyl-methyltransferase MraW [Lactobacillus reuteri DSM 20016] gi|184153222|ref|YP_001841563.1| hypothetical protein LAR_0567 [Lactobacillus reuteri JCM 1112] gi|227364723|ref|ZP_03848772.1| S-adenosyl-methyltransferase [Lactobacillus reuteri MM2-3] gi|325682650|ref|ZP_08162167.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Lactobacillus reuteri MM4-1A] gi|263456253|sp|A5VJ28|RSMH_LACRD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263456260|sp|B2G6K1|RSMH_LACRJ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|148530853|gb|ABQ82852.1| S-adenosyl-methyltransferase MraW [Lactobacillus reuteri DSM 20016] gi|183224566|dbj|BAG25083.1| conserved hypothetical protein [Lactobacillus reuteri JCM 1112] gi|227070182|gb|EEI08556.1| S-adenosyl-methyltransferase [Lactobacillus reuteri MM2-3] gi|324978489|gb|EGC15439.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Lactobacillus reuteri MM4-1A] Length = 318 Score = 189 bits (481), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 120/305 (39%), Positives = 180/305 (59%), Gaps = 13/305 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77 HV VLL++ +A LN P +DAT G GG++++ + + ++ + D+D A+ +E Sbjct: 6 HVTVLLKEAVAGLNVQPTGTYVDATLGGGGHTQAILQQLVDGHLYSFDQDQTAIDYNKEH 65 Query: 78 MRDYKEQ--FSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 ++ EQ +L + F L+ + K V+G+++DLGVSS Q D RGFS+Q P Sbjct: 66 LKTAIEQQKLTLVEDNFRNLKAELNSYNVKHVNGILYDLGVSSPQFDDAKRGFSYQHDAP 125 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ +SA +VVN+ + L +IL GEEK A IA I +RR+ AP +TT +L Sbjct: 126 LDMRMNQEQKLSAMEVVNEWPYERLVKILYRYGEEKFAKSIARKIEQRRKVAPIKTTFEL 185 Query: 192 SSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I++ + ++ + HPA +SFQA+RI VN+E+ L + L A L GG + V++F Sbjct: 186 VDVIKEGIPAAARRHGGHPAKKSFQAIRIAVNDELGALEESLEQALDLLDVGGRISVITF 245 Query: 251 HSLEDRLVKKFF---ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 SLEDRLVK F S SG V +IP+ P F+ I KK +V + E++A N R+ Sbjct: 246 QSLEDRLVKTMFREKTSLSGDVPQGLPVIPAGMEPN-FKLINKKPIVASDEELAANHRAH 304 Query: 308 SAKLR 312 SAKLR Sbjct: 305 SAKLR 309 >gi|227504684|ref|ZP_03934733.1| S-adenosyl-methyltransferase MraW [Corynebacterium striatum ATCC 6940] gi|227198694|gb|EEI78742.1| S-adenosyl-methyltransferase MraW [Corynebacterium striatum ATCC 6940] Length = 355 Score = 189 bits (481), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 122/355 (34%), Positives = 199/355 (56%), Gaps = 32/355 (9%) Query: 2 ESKSCKTMSSAIHHTIGD---HVPVLLEKVIALLNPA-----PGKVILDATFGAGGYSRS 53 + K+ +++ I++ I + HVPV+ E++ LL PA V++D T GAGG++ Sbjct: 4 QDKNTDNVANNINYDIAENHGHVPVMRERMAQLLAPAIEAAGSNAVVVDGTLGAGGHADF 63 Query: 54 FCKMGSN--VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ-----------DYVP 100 F + N V+ +DRD +++ E + ++++F A F ++ D Sbjct: 64 FLRTFPNLHVVGVDRDGASLAAATERLEPFEDRFVGVNARFDEVGGEIARGEGAIFDIAR 123 Query: 101 DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRI 159 + G+ G +FDLGVSSMQ+D +RGF+++ PLDMRM S GI+A+DV+N + DL RI Sbjct: 124 EHGIAGALFDLGVSSMQLDQVERGFAYKTDAPLDMRMDPSHGITAADVLNTYSHGDLARI 183 Query: 160 LGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALR 218 L G+E+ A +IA A++K R+ PF ++ L L+ T+ ++ HPA R+FQALR Sbjct: 184 LKTYGDERFAGKIASAVLKEREKEPFSNSERLVELLYATIPAATRRTGGHPAKRTFQALR 243 Query: 219 IFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFAS-RSGKVMAVRHM-I 276 + VN E+E + Q + AL GG + +S+ SLEDR VK+ FA + K A M + Sbjct: 244 VEVNRELEAIEQVIPVITDALHVGGRAVFMSYQSLEDRTVKQAFAELAASKTPAGLPMDL 303 Query: 277 PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDDSFVHLP 331 P A F+++T+ + E++ N R+ S ++RA +ER +E + +H P Sbjct: 304 PGTA--PKFKTVTRGAEKASAEEIEENSRAASVRVRA----IER-LEGEPHLHPP 351 >gi|86148532|ref|ZP_01066819.1| S-adenosyl-methyltransferase [Vibrio sp. MED222] gi|218708478|ref|YP_002416099.1| S-adenosyl-methyltransferase MraW [Vibrio splendidus LGP32] gi|263505899|sp|B7VIZ5|RSMH_VIBSL RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|85833678|gb|EAQ51849.1| S-adenosyl-methyltransferase [Vibrio sp. MED222] gi|218321497|emb|CAV17449.1| S-adenosyl-methyltransferase mraW [Vibrio splendidus LGP32] Length = 316 Score = 189 bits (481), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 119/310 (38%), Positives = 174/310 (56%), Gaps = 22/310 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H+ VLL + I L P +D TFG GG+SR+ K+G N + ++DRDP A++ Q+ Sbjct: 7 HISVLLNESIDGLAIKPDGTYIDGTFGRGGHSRTILSKLGENGRLFSIDRDPQAIAEAQK 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +F++ FS + +Y VDGV+ DLGVSS Q+D +RGFSF K GP Sbjct: 67 I---DDPRFTIIHGPFSGMAEYAERYDLVGQVDGVLLDLGVSSPQLDDAERGFSFMKDGP 123 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV---KRRQSAPFQTT 188 LDMRM +GI S + +A++ D+T ++ GE+K A RIA I+ + ++ P T Sbjct: 124 LDMRMDPTTGIPVSQWLVEADLDDITWVIREFGEDKHARRIAKGIIAYQENEENEPLTRT 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ LI S + HPATR+FQA RI++N+E+EE+ L+ A L G + V+ Sbjct: 184 GQLAKLISDVAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAASILAPQGRISVI 243 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH------PAVFQSITKKVVVPTQEDVAF 302 SFHSLEDR+VK+F S + V H +P A + I K + P++++V Sbjct: 244 SFHSLEDRMVKRFIRKES-QGPQVPHGLPLTEEQIKALGSADLKPIG-KAIKPSKDEVDE 301 Query: 303 NRRSRSAKLR 312 N RSRS+ LR Sbjct: 302 NTRSRSSVLR 311 >gi|210608682|ref|ZP_03287959.1| hypothetical protein CLONEX_00138 [Clostridium nexile DSM 1787] gi|210152939|gb|EEA83945.1| hypothetical protein CLONEX_00138 [Clostridium nexile DSM 1787] Length = 311 Score = 189 bits (481), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 115/310 (37%), Positives = 176/310 (56%), Gaps = 13/310 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 +H VLLE+ + LN P + +D T G GG++ CK +N I +D+D A+ Sbjct: 4 EHKSVLLEETVNGLNIKPDGIYVDGTLGGGGHAYEVCKHLNNKGRFIGIDQDEAAIEAAG 63 Query: 76 ETMRDYKEQFSLFQATF----SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + D+ E+ ++ ++ + S+LQ+ DK VDG+V DLGVSS Q+D +RGFS++ Sbjct: 64 SRLIDFGERVTIVRSNYCDMKSKLQELGIDK-VDGIVLDLGVSSYQLDTAERGFSYRVDA 122 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM ++A D+VN+ + DL RI+ GE+K A IA IV R+ P +TT Sbjct: 123 PLDMRMDRRQKMTAKDIVNEYSEMDLFRIIRDYGEDKFAKNIAKHIVLEREKGPIETTGQ 182 Query: 191 LSSLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L +I++ + F K HPA R+FQA+RI +N E+E L + L + L G + ++ Sbjct: 183 LIEIIKRAIPMKFQKTAG-HPAKRTFQAIRIELNRELEVLRESLDDMIELLNKDGRICII 241 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+VK F H + + + + IT+K ++P+ E++ N RS+ Sbjct: 242 TFHSLEDRIVKGIFRKNENPCTCPPHFPVCVCGNESKGRVITRKPILPSAEELEENSRSK 301 Query: 308 SAKLRAGMRT 317 SAKLR RT Sbjct: 302 SAKLRIFERT 311 >gi|332283258|ref|YP_004415169.1| S-adenosyl-methyltransferase MraW [Pusillimonas sp. T7-7] gi|330427211|gb|AEC18545.1| S-adenosyl-methyltransferase MraW [Pusillimonas sp. T7-7] Length = 357 Score = 189 bits (481), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 122/325 (37%), Positives = 187/325 (57%), Gaps = 31/325 (9%) Query: 20 HVPVLLEKVI-ALLNPAPG-----------------KVILDATFGAGGYSR---SFCKMG 58 H PVLLE + AL++P G V +D TFG GG+SR S Sbjct: 5 HRPVLLEPTVNALVDPGFGVKGKRSQMRDDSQALADGVFVDGTFGRGGHSRLLLSRLSPD 64 Query: 59 SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSS 115 + ++ D+DP A++ Q +R E+ + + F+ + + G V+GV+ DLG+SS Sbjct: 65 AKLVVFDKDPEAIAAAQ-ALRQEDERVVVVHSGFANMPAQLQALGITEVNGVMLDLGISS 123 Query: 116 MQIDCGDRGFSFQKSGPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAH 174 QID RGFSF + GPLDMRM + SG++A+ + Q ++ +L ++ GEE+ A +IA Sbjct: 124 PQIDDASRGFSFMREGPLDMRMDTSSGLTAAQWLAQVDIDELKEVIAKYGEERFAFQIAK 183 Query: 175 AIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234 A++ RR+S P +TT DL+ L+ V + + HPATR+FQA+RI++N E++ELA L + Sbjct: 184 AVIARRESRPLRTTLDLAELVASVVRTREKGQ-HPATRTFQAIRIYLNQELQELALALAA 242 Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKV 292 + L GG L V+SFHSLEDR+VK+ ASR V A ++ + + S+ + Sbjct: 243 VLRVLAPGGRLAVISFHSLEDRMVKQCIAAASRPAAVHARLPILEKDMPQPILNSLGR-- 300 Query: 293 VVPTQEDVAFNRRSRSAKLRAGMRT 317 ++PT+++ N R+RSA LR RT Sbjct: 301 ILPTEQESKENVRARSAVLRVAERT 325 >gi|291571686|dbj|BAI93958.1| S-adenosyl-methyltransferase MraW [Arthrospira platensis NIES-39] Length = 312 Score = 189 bits (481), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 122/311 (39%), Positives = 174/311 (55%), Gaps = 30/311 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQ-- 75 H+PVL ++I L G LDAT G GG+++ + NV A+DRD A++ + Sbjct: 19 HIPVLGRELIEGLAVQEGGHYLDATVGGGGHTKMIFQGAPNVRVTAIDRDLEAIAAAKSM 78 Query: 76 --ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +TM + ++ + FSQ P + DG++ DLGV+S Q+D RGFSF+ GPL Sbjct: 79 LMDTMGNCGDRLQFWHGNFSQYPS-SPSQ-FDGIIADLGVNSHQLDTPGRGFSFRHCGPL 136 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +SA++++N + K L I GEE+ + RIA IV++R PFQTT+ L+ Sbjct: 137 DMRMNPQDPLSAAEIINTWDEKQLADIFYTYGEERLSRRIARQIVEKR---PFQTTEQLA 193 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 I V + RIHPATR FQALRI VN E+ L L +A LK GG + ++SFH Sbjct: 194 GAIANCVPSKYRYGRIHPATRVFQALRIAVNGELSALETFLETAPTWLKPGGRIGIISFH 253 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR VK F RH HP + + +TKK + P ++++ N R+RSAKL Sbjct: 254 SLEDRPVKHGF----------RH------HP-LLKVLTKKPITPQPDEISQNPRARSAKL 296 Query: 312 RAGMRTVERSI 322 R R ++ Sbjct: 297 RLAQRNTNETL 307 >gi|289522914|ref|ZP_06439768.1| S-adenosyl-methyltransferase MraW [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503938|gb|EFD25102.1| S-adenosyl-methyltransferase MraW [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 300 Score = 189 bits (481), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 113/309 (36%), Positives = 181/309 (58%), Gaps = 25/309 (8%) Query: 20 HVPVLLEKVIALLNPAPG-KVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76 HVPVL ++I +L+ + K+++DAT G GG++ + ++ + LD+D A+ E Sbjct: 6 HVPVLTNEIINILSLSDDLKLVVDATVGLGGHAYALLSTFPDIKLLGLDQDETALEIAYE 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 ++ + E+ L ++ F + D V + VD ++FDLGVSS+QID +RGFSF K GP Sbjct: 66 RLKPFGERVLLVKSNFRFIDDVVKNHFRSVAVDAILFDLGVSSLQIDDEERGFSFNKPGP 125 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK-RRQSAPFQTTQD 190 +DMRM ++A D++N +KDL+ I GEE+ + +IA AIV+ R Q +T + Sbjct: 126 IDMRMDREAKVTAFDIINNYCIKDLSDIFYKYGEERYSRQIAKAIVRYREQKGLIASTAE 185 Query: 191 LSSLIQKTVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L +I++ + ++ HPA R FQALRI VN+E+ L GL+++ L++GG LIV+ Sbjct: 186 LVEIIRRALPAKIQRQMGKHPARRVFQALRIVVNDELGALESGLKNSLGCLRSGGHLIVI 245 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 S+HSLEDR+VK H + + +KK ++P +E++ N RSRS Sbjct: 246 SYHSLEDRIVK--------------HSFKDWEKEGIGKIFSKKPILPKREEIEGNPRSRS 291 Query: 309 AKLRAGMRT 317 AKLR +++ Sbjct: 292 AKLRVLIKS 300 >gi|134298535|ref|YP_001112031.1| S-adenosyl-methyltransferase MraW [Desulfotomaculum reducens MI-1] gi|263446306|sp|A4J2A3|RSMH_DESRM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|134051235|gb|ABO49206.1| S-adenosyl-methyltransferase MraW [Desulfotomaculum reducens MI-1] Length = 313 Score = 189 bits (481), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 116/311 (37%), Positives = 174/311 (55%), Gaps = 27/311 (8%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MG--SNVIALDRDPFAVSCGQE 76 HV VLL + I L PG + +D T G G+S + +G ++ +D+DP A++ E Sbjct: 5 HVSVLLHESIDGLKIKPGGIYVDCTLGGAGHSLEILRRLGPEGKLVGIDQDPAAIANAAE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++++ QF Q F Q++ + + VDG++FDLGVSS Q+D +RGFS+ L Sbjct: 65 KLQEFPGQFHAVQRNFFQIKQILREMAISEVDGILFDLGVSSYQLDTPERGFSYMHDAEL 124 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM ISA ++VN + ++L I+ GE++ A RIA IVK R+ TT +L Sbjct: 125 DMRMGPDQTISAKELVNDISEEELATIIRRYGEDRWAKRIASFIVKERKKRAIHTTGELV 184 Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ V ++ HPA R+FQALRI VNNE+E L Q ++ A ALK+GG + V++FH Sbjct: 185 DIIKAAVPVGARREGPHPAKRTFQALRIAVNNELEILEQTMKDAVTALKSGGRISVITFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV----------FQSITKKVVVPTQEDVA 301 SLEDR++K F + P PA + +T K + P++E++ Sbjct: 245 SLEDRIIKDTFKELAN---------PCTCPPAFPVCACGKQPQIKIVTGKPIQPSKEELE 295 Query: 302 FNRRSRSAKLR 312 N R+RSAKLR Sbjct: 296 HNPRARSAKLR 306 >gi|62260134|gb|AAX77882.1| unknown protein [synthetic construct] Length = 340 Score = 189 bits (481), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 121/312 (38%), Positives = 182/312 (58%), Gaps = 22/312 (7%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVS 72 H + H VLL++ I LN P + +DATFG GG+S++ +IA D+D A+S Sbjct: 23 HMLEMHYSVLLQESINDLNINPQGIYIDATFGRGGHSKAILNRLTTGRLIAFDKDLDAIS 82 Query: 73 CGQETMRDYKEQFSLFQ---ATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGF 125 +E QFS F+ A+F+ + DY +DG++ DLGVSS Q+D RGF Sbjct: 83 YARENF-----QFSNFEIVHASFASIYDYCLQHSLLGKIDGIIMDLGVSSPQLDNAARGF 137 Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSA 183 SF +GPLDMRM S GI+AS + + +V DL+ I + GEE+ A +IA I +Q+ Sbjct: 138 SFTHNGPLDMRMDVSKGITASQALEELSVDDLSYIFKVYGEERFAKKIALRIKDYIQQNG 197 Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 + T +L+ LI T+ K + +PATR FQALRI+VNNE+++L L + +K+GG Sbjct: 198 SIRKTLELAELILATI--GKKEKKNPATRCFQALRIYVNNELKDLEALLENILAVIKSGG 255 Query: 244 LLIVVSFHSLEDRLVKKFFASR---SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300 + +SFHSLEDR+VK+ F++ ++ + M+P ++ + ITKK ++++ Sbjct: 256 RIAAISFHSLEDRIVKQKFSALINPKQELNRITKMLPQDSSQIKLKWITKKSKA-NEDEL 314 Query: 301 AFNRRSRSAKLR 312 N RSRSA LR Sbjct: 315 NQNVRSRSAILR 326 >gi|167035511|ref|YP_001670742.1| S-adenosyl-methyltransferase MraW [Pseudomonas putida GB-1] gi|262825111|sp|B0KFT4|RSMH_PSEPG RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|166861999|gb|ABZ00407.1| S-adenosyl-methyltransferase MraW [Pseudomonas putida GB-1] Length = 315 Score = 189 bits (481), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 122/307 (39%), Positives = 177/307 (57%), Gaps = 18/307 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMG--SNVIALDRDPFAVSCGQ 75 +H+ VLL++ + L LD TFG GG+SR K+G ++ D+DP A++ GQ Sbjct: 8 NHITVLLDEAVEALALRADGCYLDGTFGRGGHSRLILSKLGPQGRLLGFDKDPQAIATGQ 67 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +F + Q +F++L V ++G V GV+ DLGVSS Q+D +RGFSF G Sbjct: 68 -ALAAEDGRFVIVQRSFAELGAEVAERGLHGKVSGVLLDLGVSSPQLDDPERGFSFLNDG 126 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ GISA++ + A V+++ R+ GEE+ A R+A A+V+RR+ PF T D Sbjct: 127 PLDMRMNPGQGISAAEFIATAPVEEIARVFKEYGEERFAGRMARAVVERREKQPFTRTAD 186 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ ++ K + +PATR+FQ LRI VNNE+ +L GL +A AL+ GG L V+SF Sbjct: 187 LAEVL-KVANPAWEKGKNPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLAVISF 245 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITK---KVVVPTQEDVAFNRR 305 HSLEDR+VK F V +P N VF+ K K ++ ++ N R Sbjct: 246 HSLEDRIVKLFMRKL---VKGEADNLPRNLPVQHKVFEPKIKLIGKAQFASEAELKANPR 302 Query: 306 SRSAKLR 312 SRSA +R Sbjct: 303 SRSAVMR 309 >gi|297268190|ref|XP_002799639.1| PREDICTED: putative S-adenosyl-L-methionine-dependent methyltransferase METT5D1-like isoform 2 [Macaca mulatta] Length = 452 Score = 189 bits (481), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 112/295 (37%), Positives = 161/295 (54%), Gaps = 52/295 (17%) Query: 20 HVPVLLEKVIALLNPAPGKV---------------------------------ILDATFG 46 H+PV++++V+ L+P G++ LD TFG Sbjct: 72 HIPVMVDEVVHCLSPQKGQISFMCIVLFAYPNNLVMWTRMVHLHTRKLRLREIFLDMTFG 131 Query: 47 AGGYSRSFCKMGSNVI--ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV 104 +GG++++ + S+++ ALDRDP A + + Y +Q FSQ + + GV Sbjct: 132 SGGHTKAILQKESDIVLYALDRDPTAYALAEHLSELYPKQIRAVLGQFSQAEALLTKAGV 191 Query: 105 -----DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI----SASDVVNQANVKD 155 DGV+ DLG SSMQ+D +RGFS +K GPLDMRM +A+DVVN + Sbjct: 192 QPGTFDGVLMDLGCSSMQLDTPERGFSLRKDGPLDMRMDGGRYPDMPTAADVVNALDQPA 251 Query: 156 LTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ-----KTVYFSKN---NRI 207 L IL GEEK A +IA AIV+ R P TQ L+S++ +Y K+ Sbjct: 252 LASILRTYGEEKHARKIASAIVQARSIYPITRTQQLASIVAGAFPPSAIYARKDLLQRST 311 Query: 208 HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF 262 H AT++FQALRIFVNNE+ EL GL++A+K L+ GG L+ +SFHSLEDR++K+F Sbjct: 312 HIATKTFQALRIFVNNELNELYTGLKTAQKFLRPGGRLVALSFHSLEDRIIKRFL 366 >gi|261867472|ref|YP_003255394.1| S-adenosyl-methyltransferase MraW [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412804|gb|ACX82175.1| S-adenosyl-methyltransferase MraW [Aggregatibacter actinomycetemcomitans D11S-1] Length = 322 Score = 189 bits (481), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 129/318 (40%), Positives = 180/318 (56%), Gaps = 28/318 (8%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQ 75 +H+ VLL + + L + +D TFG GG+SR S + +IA+DRDP AV+ Q Sbjct: 11 EHLTVLLHETVDGLALKENGIYIDGTFGRGGHSRLILSQLSVNGKLIAIDRDPQAVAEAQ 70 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +F + TFS++ G VDG++ DLGVSS Q+D +RGFSF K G Sbjct: 71 KIQ---DSRFHIEHNTFSEILPICEKFGLVGKVDGILLDLGVSSPQLDDAERGFSFMKDG 127 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP------ 184 PLDMRM S GISA++ + Q + +DL +L GEE+ A RIA IV +SA Sbjct: 128 PLDMRMDSSKGISAAEWLAQVSEQDLAWVLKTFGEERFAKRIAKVIVDYNKSAVQNGGEF 187 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 T L+ LI + V F K+ HPATRSFQA+RI++N E++EL L+SA L G Sbjct: 188 LARTLQLAELITQAVPF-KDKYKHPATRSFQAIRIYINAELDELENVLQSALSVLAPKGR 246 Query: 245 LIVVSFHSLEDRLVKKFFASRS-GKV----MAVRH-MIPSNAHPAVFQSITKKVVVPTQE 298 L V+SFHSLEDR+VK+F +S G+V + +R I N V K ++P++ Sbjct: 247 LSVISFHSLEDRMVKQFMRKQSQGEVIPKGLPLREDQIQRNRRLKVI----GKAIMPSEA 302 Query: 299 DVAFNRRSRSAKLRAGMR 316 ++ N R+RSA LR R Sbjct: 303 EIVQNPRARSAVLRIAER 320 >gi|311068034|ref|YP_003972957.1| S-adenosyl-methyltransferase MraW [Bacillus atrophaeus 1942] gi|310868551|gb|ADP32026.1| S-adenosyl-methyltransferase MraW [Bacillus atrophaeus 1942] Length = 311 Score = 189 bits (481), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 116/303 (38%), Positives = 174/303 (57%), Gaps = 11/303 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H VLL + + L+ P +D T G G+S + S +IA D+D A+ +E Sbjct: 4 HKTVLLRETVDGLDIKPDGTYVDCTLGGAGHSTYLLQQLSEKGRLIAFDQDDTALQHAKE 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + YK Q L ++ F L+D + ++G+ DGV+FDLGVSS Q+D +RGFS+ PL Sbjct: 64 KLSGYKGQLILIKSNFRYLKDCLNEQGITEIDGVLFDLGVSSPQLDTPERGFSYHHDAPL 123 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S ++A +VVN+ +DL RI GEEK + +IA I + R +P QTT L Sbjct: 124 DMRMDQSAPLTAKEVVNEWRYEDLVRIFFRYGEEKFSKQIARKIEEARSKSPIQTTGQLV 183 Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 LI+ + ++ + HPA R FQA+RI VN+E++ + L A + LK GG + V++FH Sbjct: 184 DLIKDAIPAPARRSGGHPAKRVFQAIRIAVNDELKVFEEALLQAIEVLKPGGRVSVITFH 243 Query: 252 SLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+ K F S ++ +IP P + + IT+K + ++E++ N R+RSA Sbjct: 244 SLEDRICKATFKEMSSLPELPPGLPVIPEEFEPEL-KLITRKPITASEEELEENNRARSA 302 Query: 310 KLR 312 KLR Sbjct: 303 KLR 305 >gi|210134911|ref|YP_002301350.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori P12] gi|226709920|sp|B6JLU2|RSMH_HELP2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|210132879|gb|ACJ07870.1| S-adenosyl-methyltransferase [Helicobacter pylori P12] Length = 308 Score = 189 bits (480), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 120/302 (39%), Positives = 181/302 (59%), Gaps = 16/302 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVSCGQET 77 H VLL++V+ P V++D T G GG+S++ K +I +D+D FA +E Sbjct: 8 HQSVLLQEVLQAFAPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFAQEIAKER 67 Query: 78 MRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++ ++ +++L F++ ++ + G + GV+ DLGVSS+Q+D +RGF+F S LD Sbjct: 68 LKAFEGRYNLLSGGFAKRFKEALEMHGERIKGVLVDLGVSSLQLDDDNRGFNFH-SHALD 126 Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM S ++A V+N +V L +I GE K+ +IAH I +RR PF+ +DLS Sbjct: 127 MRMDLESDLNAQKVINSYSVVALEKIFRDYGEIKEYKKIAHKIAERRAKKPFKDAKDLSD 186 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 + FSKN +IHPAT FQA+RI VN+E+EEL + L+ A + LK G +L V+SFHSL Sbjct: 187 FLSS---FSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCA-RNLK-GAILCVISFHSL 241 Query: 254 EDRLVKKFFASRSGKVM---AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 ED LVK F + + + SN H A+ +TKK ++P+ E++ NRRSRSAK Sbjct: 242 EDALVKNAFKDYAKNCICDPSSFKCTCSNNH-ALGTILTKKPIIPSPEEIKNNRRSRSAK 300 Query: 311 LR 312 +R Sbjct: 301 MR 302 >gi|257463543|ref|ZP_05627936.1| methyltransferase [Fusobacterium sp. D12] gi|317061098|ref|ZP_07925583.1| S-adenosyl-methyltransferase mraW [Fusobacterium sp. D12] gi|313686774|gb|EFS23609.1| S-adenosyl-methyltransferase mraW [Fusobacterium sp. D12] Length = 313 Score = 189 bits (480), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 112/302 (37%), Positives = 178/302 (58%), Gaps = 12/302 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+PVL E+ + L P + +D T G G +S K S +I++D+D A++ ++ Sbjct: 9 HIPVLYEETLENLLWNPDGIYIDCTLGGGSHSEGILKRLSEKGRLISIDQDASAIAFCKK 68 Query: 77 TMRDYKEQFSLFQATFSQLQ--DYVP--DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + Y +Q+S+FQ F + Y+ DK VDG++ D+GVSS Q+D G+RGFS++ Sbjct: 69 RLEKYGKQWSVFQNNFENIDIVSYLAGLDK-VDGILMDIGVSSTQLDDGERGFSYRYDAK 127 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ +SA +VVNQ +DL RIL GEE+ A +IA I + R+ P +TT +L Sbjct: 128 LDMRMNAEQELSAYEVVNQYAEQDLVRILFEYGEERYAKKIAAFICENRKEKPIETTGEL 187 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++I++ + + HPA ++FQA+R+ VN E+E L ++ + + LK G L +++FH Sbjct: 188 VAIIKRA--YPERAAKHPAKKTFQAIRMEVNRELEVLETAIQKSVELLKPKGRLAIITFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDRLVK F + + + A + ITKK ++P++E+V N R+ S+K Sbjct: 246 SLEDRLVKTVFKDLARACKCPPELPVCVCGGKAKVKIITKKPILPSEEEVGKNNRAHSSK 305 Query: 311 LR 312 LR Sbjct: 306 LR 307 >gi|167626453|ref|YP_001676953.1| S-adenosyl-methyltransferase MraW [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|254813209|sp|B0TZ13|RSMH_FRAP2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|167596454|gb|ABZ86452.1| S-adenosylmethionine-dependent methyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 308 Score = 189 bits (480), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 120/304 (39%), Positives = 177/304 (58%), Gaps = 16/304 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN-VIALDRDPFAVSCGQET 77 H VLL++ IA LN P + +DATFG GG+S++ K+ S +IA D+D A+ Sbjct: 5 HFSVLLQESIADLNINPEGIYIDATFGRGGHSKAILDKLTSGRLIAFDKDLDAIDYATHN 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ + F + A+F+ + DY VDG++ DLGVSS Q+D +RGFSF GPL Sbjct: 65 FQN--DNFEMVHASFTYIYDYCLQHNLLGRVDGIIMDLGVSSPQLDNANRGFSFTHDGPL 122 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTTQDL 191 DMRM S G++AS + + +V +LT I + GEE+ A +IA I ++ TT L Sbjct: 123 DMRMDISKGLTASQALEELSVDELTYIFKVYGEERFAKKIALRIKGYIAENGSITTTHQL 182 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI+ T+ K + +PATR FQALRI+VN+E+++L L S +K GG + +SFH Sbjct: 183 AELIRATI--GKREKKNPATRCFQALRIYVNDELKDLEILLESILDVIKKGGRVAAISFH 240 Query: 252 SLEDRLVKKFFASR---SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SLEDR+VK+ F S + + M+P + + ITKK Q++++ N RSRS Sbjct: 241 SLEDRIVKQKFTSLINPKQETNRIAKMLPQDNSQVKMKWITKK-AKANQDELSQNVRSRS 299 Query: 309 AKLR 312 A LR Sbjct: 300 AILR 303 >gi|241895696|ref|ZP_04782992.1| S-adenosyl-methyltransferase [Weissella paramesenteroides ATCC 33313] gi|241871063|gb|EER74814.1| S-adenosyl-methyltransferase [Weissella paramesenteroides ATCC 33313] Length = 314 Score = 189 bits (480), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 118/304 (38%), Positives = 172/304 (56%), Gaps = 12/304 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 HV VLL + I LN P V +DAT G GG+S+ S + + D+D A++ QE Sbjct: 6 HVTVLLREAIDGLNVQPDGVYVDATLGGGGHSKLLASRLSTGKLWSFDQDETAITYNQEH 65 Query: 78 MRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + D + + Q F L D + + V DG+V+DLGVSS Q D G RGFS+ P Sbjct: 66 LADEIAAGKVAFIQDNFRHLHDALMAEDVSTIDGIVYDLGVSSPQFDDGQRGFSYNYDAP 125 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S ++A VVN+ + +L RI GEEK A +IA I R+ P +TT +L Sbjct: 126 LDMRMDQSQSLTARTVVNEWSFHELLRIFSRYGEEKFAKQIARKIEHEREIKPIETTFEL 185 Query: 192 SSLIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 ++I+ ++ + + HPA R+FQA+RI VN+E+ + + L A L G + V++F Sbjct: 186 VNIIKDSIPAAARRKGGHPAKRTFQAIRIAVNDELGAVEESLAQALDMLNVHGRIAVITF 245 Query: 251 HSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 HSLEDRLVK F + + A +IP P F+ + +K ++P+ E++A NRR+ S Sbjct: 246 HSLEDRLVKTMFKEKVSIPDLPAGLPIIPEEMQPD-FKLVVRKPILPSDEELATNRRAHS 304 Query: 309 AKLR 312 AKLR Sbjct: 305 AKLR 308 >gi|15645330|ref|NP_207501.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori 26695] gi|8134812|sp|O25411|RSMH_HELPY RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|2313835|gb|AAD07761.1| conserved hypothetical protein [Helicobacter pylori 26695] Length = 308 Score = 189 bits (480), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 120/304 (39%), Positives = 181/304 (59%), Gaps = 20/304 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVSCGQET 77 H VLL++V+ P V++D T G GG+S++ K +I +D+D FA +E Sbjct: 8 HQSVLLQEVLQAFMPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFAQEIAKER 67 Query: 78 MRDYKEQFSLFQATFSQ-----LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 ++ ++ +++L F++ L+ + +K + GV+ DLGVSS+Q+D +RGF+F S Sbjct: 68 LKAFEGRYNLLSGGFAKRFKEALETH--NKEIKGVLVDLGVSSLQLDDDNRGFNFH-SHT 124 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S ++A V+N + L +I GE K+ +IAH I +RR PF+ +DL Sbjct: 125 LDMRMDLESELNAQKVINSYPIVALEKIFRDYGEIKEYKKIAHKIAERRAKKPFKNAKDL 184 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 S + FSKN +IHPAT FQA+RI VN+E+EEL + L+ A + LK G +L V+SFH Sbjct: 185 SEFLSS---FSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCA-RNLK-GAILCVISFH 239 Query: 252 SLEDRLVKKFFASRSGKVM---AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SLED LVK F + + + SN H A+ + +TKK + P+ E++ NRRSRS Sbjct: 240 SLEDALVKNAFKDYAKNCICDPSSFKCACSNNH-ALGEILTKKPITPSPEEIKNNRRSRS 298 Query: 309 AKLR 312 AK+R Sbjct: 299 AKMR 302 >gi|167966821|ref|ZP_02549098.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis H37Ra] gi|215411891|ref|ZP_03420665.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis 94_M4241A] gi|215427543|ref|ZP_03425462.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis T92] gi|215446396|ref|ZP_03433148.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis T85] Length = 331 Score = 189 bits (480), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 116/320 (36%), Positives = 176/320 (55%), Gaps = 20/320 (6%) Query: 21 VPVLLEKVIALLNPAPGK--------VILDATFGAGGYSRSFCK--MGSNVIALDRDPFA 70 +PVL ++ LL PA + V+LDAT GAGG++ F + G +I LDRDP A Sbjct: 1 MPVLAQRCFELLTPALTRYYPDGSQAVLLDATIGAGGHAERFLEGLPGLRLIGLDRDPTA 60 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSSMQIDCGDRG 124 + + + + ++ +L + L + + G VDG++FDLGVSSMQ+D +RG Sbjct: 61 LDVARSRLVRFADRLTLVHTRYDCLGAALAESGYAAVGSVDGILFDLGVSSMQLDRAERG 120 Query: 125 FSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 F++ PLDMRM + ++A+D+VN + L IL GEE+ A RIA IV+RR Sbjct: 121 FAYATDAPLDMRMDPTTPLTAADIVNTYDEAALADILRRYGEERFARRIAAGIVRRRAKT 180 Query: 184 PFQTTQDLSSLIQKTVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 PF +T +L +L+ + + + R+ HPA R+FQALRI VN+E+E L + +A AL Sbjct: 181 PFTSTAELVALLYQAIP-APARRVGGHPAKRTFQALRIAVNDELESLRTAVPAALDALAI 239 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 GG + V+++ SLEDR+VK+ FA + H F+S+T + ++ Sbjct: 240 GGRIAVLAYQSLEDRIVKRVFAEAVASATPAGLPVELPGHEPRFRSLTHGAERASVAEIE 299 Query: 302 FNRRSRSAKLRAGMRTVERS 321 N RS +LRA R R+ Sbjct: 300 RNPRSTPVRLRALQRVEHRA 319 >gi|261405657|ref|YP_003241898.1| S-adenosyl-methyltransferase MraW [Paenibacillus sp. Y412MC10] gi|261282120|gb|ACX64091.1| S-adenosyl-methyltransferase MraW [Paenibacillus sp. Y412MC10] Length = 317 Score = 189 bits (480), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 114/309 (36%), Positives = 174/309 (56%), Gaps = 16/309 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+ VL ++ L P + +D T G G+S S+ +IALD+D +A++ +E Sbjct: 4 HITVLKQEATEGLRIKPDGIYVDCTLGGAGHSSLIASQLSSEGRLIALDQDDWALNNARE 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYV------PDKG---VDGVVFDLGVSSMQIDCGDRGFSF 127 M+ Y ++ SL + F L++ + + G VDG++FDLGVSS Q D G+RGFS+ Sbjct: 64 AMKPYADRISLVKTNFRDLEEVLRREVGAGENGQPQVDGILFDLGVSSPQFDEGERGFSY 123 Query: 128 QKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 PLDMRM S ++A+ +VN+ +++ RIL GEEK + RIA IV+RR +P Q Sbjct: 124 NHDAPLDMRMDQSAELTAAKIVNEWPEQEIARILYQYGEEKFSRRIAKVIVERRAQSPIQ 183 Query: 187 TTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT +L +I++ + ++ HPA RSFQA RI VN+E+ L A + L GG + Sbjct: 184 TTGELVEMIKEGIPAAARRTGGHPAKRSFQAFRIAVNDELGAFEDALHQAVRCLAPGGRI 243 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 V++FHSLEDR+ K+ F S K M + + +K ++P+ E++ N Sbjct: 244 SVITFHSLEDRICKQIFNSYIPKCTCPPDFPMCVCGGGQGDLKLVNRKPLIPSAEEIESN 303 Query: 304 RRSRSAKLR 312 R+RSAKLR Sbjct: 304 PRARSAKLR 312 >gi|86606931|ref|YP_475694.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. JA-3-3Ab] gi|123505404|sp|Q2JSF0|RSMH_SYNJA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|86555473|gb|ABD00431.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. JA-3-3Ab] Length = 309 Score = 189 bits (480), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 127/313 (40%), Positives = 170/313 (54%), Gaps = 35/313 (11%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETM 78 H VL E V+A L P G LD T G GG+S + + G++ V+ LDRDP A+ Q + Sbjct: 16 HESVLTEAVVAYLQPQQGGAFLDVTLGGGGHSLALLQRGADRVVGLDRDPTALQAAQARL 75 Query: 79 RDYK---EQFSLFQATFS----QLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSF 127 + L+ F+ Q + ++G DG+V DLGVSS Q+DC +RGFSF Sbjct: 76 AAAGIPGNRLQLWHLNFADFDLQRHGFRDERGQGIPFDGIVADLGVSSPQLDCPERGFSF 135 Query: 128 QKSGPLDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 + GPLDMRM + +A+D VN+ V+DL I GEE+ A RIAH I + R P Sbjct: 136 RAEGPLDMRMDPTADQETAADWVNRRPVEDLIDIFVRYGEERFARRIAHHIERSR---PL 192 Query: 186 QTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 TT L+ ++ + V ++ RIHPATR FQALRI VN E+E L L A LK GG Sbjct: 193 FTTTQLAHVVWQAVPPAARRGRIHPATRIFQALRIAVNRELEALETLLAQAPNWLKPGGR 252 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 L V+SFHSLEDRLVK F + +Q +T K + P++ + N Sbjct: 253 LAVISFHSLEDRLVKWAFRTDP-----------------RWQVLTPKPLCPSELEQQRNS 295 Query: 305 RSRSAKLRAGMRT 317 R+RSAKLR R+ Sbjct: 296 RARSAKLRVAARS 308 >gi|119512962|ref|ZP_01632023.1| S-adenosyl-methyltransferase [Nodularia spumigena CCY9414] gi|119462375|gb|EAW43351.1| S-adenosyl-methyltransferase [Nodularia spumigena CCY9414] Length = 302 Score = 189 bits (480), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 118/301 (39%), Positives = 174/301 (57%), Gaps = 26/301 (8%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 HVPVL ++V+ L PG LDAT G GG+SR + ++V A+D+D A+ Q+ Sbjct: 15 HVPVLSQEVVEGLAVRPGGHYLDATVGGGGHSRLILEAATDVRLTAIDQDEDALGAAQKH 74 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 + ++ ++ + FS + Y P+ DG++ DLGVSS +D +RGFSF+ + LDMRM Sbjct: 75 LAEFGDRVEFIHSNFSAYK-YSPNT-FDGILADLGVSSYHLDQPERGFSFRHAANLDMRM 132 Query: 138 SCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 + ++A+DV+N+ + +L I GEE+ + RIA IV++R PF+TT +L+ I Sbjct: 133 NQQQSLTAADVINEWDEAELADIFFKYGEERLSRRIARRIVEKR---PFETTTELAEAIA 189 Query: 197 KTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 +V + RIHPATR FQALRI VN+E++ L L A AL GG + ++SFHSLED Sbjct: 190 YSVPRQYRYGRIHPATRVFQALRIVVNDELKALETFLDQAPNALVPGGRIAIISFHSLED 249 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 R VK + S + + +TKK + +E++A N RSRSAKLR Sbjct: 250 RPVKHGLRNSS-----------------LLKVLTKKPITAKEEELANNPRSRSAKLRIAQ 292 Query: 316 R 316 R Sbjct: 293 R 293 >gi|293391350|ref|ZP_06635684.1| S-adenosyl-methyltransferase MraW [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951884|gb|EFE02003.1| S-adenosyl-methyltransferase MraW [Aggregatibacter actinomycetemcomitans D7S-1] Length = 322 Score = 189 bits (480), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 129/318 (40%), Positives = 180/318 (56%), Gaps = 28/318 (8%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQ 75 +H+ VLL + + L + +D TFG GG+SR S + +IA+DRDP AV+ Q Sbjct: 11 EHLTVLLHETVDGLALKENGIYIDGTFGRGGHSRLILSQLSVNGKLIAIDRDPQAVAEAQ 70 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +F + TFS++ G VDG++ DLGVSS Q+D +RGFSF K G Sbjct: 71 KIQ---DPRFHIEHNTFSEILPICEKFGLVGKVDGILLDLGVSSPQLDDAERGFSFMKDG 127 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP------ 184 PLDMRM S GISA++ + Q + +DL +L GEE+ A RIA IV +SA Sbjct: 128 PLDMRMDSSKGISAAEWLAQVSEQDLAWVLKTFGEERFAKRIAKVIVDYNKSAVQNGGEF 187 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 T L+ LI + V F K+ HPATRSFQA+RI++N E++EL L+SA L G Sbjct: 188 LARTLQLAELIAQAVPF-KDKYKHPATRSFQAIRIYINAELDELENVLQSALSVLAPKGR 246 Query: 245 LIVVSFHSLEDRLVKKFFASRS-GKV----MAVRH-MIPSNAHPAVFQSITKKVVVPTQE 298 L V+SFHSLEDR+VK+F +S G+V + +R I N V K ++P++ Sbjct: 247 LSVISFHSLEDRMVKQFMRKQSQGEVIPKGLPLREDQIQRNRRLKVI----GKAIMPSEA 302 Query: 299 DVAFNRRSRSAKLRAGMR 316 ++ N R+RSA LR R Sbjct: 303 EIVQNPRARSAVLRVAER 320 >gi|319897403|ref|YP_004135600.1| s-adenosyl-dependent methyltransferase activity on membrane-located substrates [Haemophilus influenzae F3031] gi|317432909|emb|CBY81275.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Haemophilus influenzae F3031] Length = 321 Score = 189 bits (480), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 127/318 (39%), Positives = 181/318 (56%), Gaps = 30/318 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76 H+ VLL + + L + +D TFG GG+SR S +IA+DRDP A++ + Sbjct: 12 HITVLLHEAVNGLALKENGIYIDGTFGRGGHSRFILSQLSFNGRLIAVDRDPRAIAEAHK 71 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++D + F + +FS + + + DK +DG++ DLGVSS Q+D +RGFSF K G Sbjct: 72 -IQDLR--FQIEHNSFSHIPE-ICDKLNLVGKIDGILLDLGVSSPQLDEAERGFSFMKDG 127 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ- 189 PLDMRM + G+SA + + Q +++DLT +L GEE+ A RIA AIV +SA +T+ Sbjct: 128 PLDMRMDTTQGLSAEEWLKQVSIEDLTWVLKTFGEERFAKRIATAIVDFNKSAVKNSTEF 187 Query: 190 -----DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 L+ LI + V F K+ HPATRSFQA+RIF+N+E++EL L SA L G Sbjct: 188 LSRTSQLAELISQAVPF-KDKHKHPATRSFQAIRIFINSELDELESLLNSALDMLAPEGR 246 Query: 245 LIVVSFHSLEDRLVKKFFASRSG-----KVMAVRH-MIPSNAHPAVFQSITKKVVVPTQE 298 L ++SFHSLEDR+VK F +S K + +R I N I K + P+ Sbjct: 247 LSIISFHSLEDRMVKHFMKKQSKGEDIPKGLPLREDQIQRNQK----LRIIGKAIQPSDA 302 Query: 299 DVAFNRRSRSAKLRAGMR 316 ++ N RSRSA LR R Sbjct: 303 EIQANPRSRSAILRVAER 320 >gi|325265585|ref|ZP_08132276.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Kingella denitrificans ATCC 33394] gi|324982933|gb|EGC18554.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Kingella denitrificans ATCC 33394] Length = 323 Score = 189 bits (480), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 120/312 (38%), Positives = 175/312 (56%), Gaps = 20/312 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQ 75 +H+ VLL + + LN P + +D TFG GG+SR S +I D+DP A++ Q Sbjct: 7 EHITVLLNEAVDALNVRPSGIYVDGTFGRGGHSRLILSRLNEQGRLIVFDKDPAAIAVAQ 66 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E R ++ S+F FS + G+ DG +FDLG+SS QID RGFSF+ P Sbjct: 67 ELARQ-DQRVSVFHQGFSHFDAACTELGISQIDGALFDLGISSPQIDDASRGFSFRFDAP 125 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G SA++ + A+ +++ ++ GEE+ + +IA AIV +R AP TT L Sbjct: 126 LDMRMDTTRGESAAEWLMHADEQEIHEVIKNYGEERFSRQIARAIVAKRIEAPIHTTGQL 185 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + + + V S+ HPATR+FQA+RI++N E++E+AQ L L G L V++FH Sbjct: 186 AEIAAQCVR-SREKGQHPATRTFQAIRIYINRELDEVAQVLPQVTTRLNTHGRLAVIAFH 244 Query: 252 SLEDRLVKKFFASRSG-----KVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 SLEDR+VK+F S K AVR +P P + I K + E++ +N R Sbjct: 245 SLEDRIVKQFMREYSTHAPLPKWAAVREADLPK---PPL--RIVGKPIKAGAEELNYNPR 299 Query: 306 SRSAKLRAGMRT 317 +RSA LR RT Sbjct: 300 ARSAILRVAERT 311 >gi|218235035|ref|YP_002368718.1| S-adenosyl-methyltransferase MraW [Bacillus cereus B4264] gi|263446873|sp|B7H6Q4|RSMH_BACC4 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|218162992|gb|ACK62984.1| S-adenosyl-methyltransferase MraW [Bacillus cereus B4264] Length = 310 Score = 189 bits (480), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 115/303 (37%), Positives = 173/303 (57%), Gaps = 11/303 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HV VLL++ + LN P +D T G GG+S G +IA D+D A+ +E Sbjct: 4 HVTVLLKETVDGLNIKPDGTYVDCTLGGGGHSSYLLSQLTEGGKLIAFDQDEIAIQNAKE 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 Y EQF ++ F L + + + G VDG++FDLGVSS Q+D +RGFS+ PL Sbjct: 64 KFSSYGEQFITVKSNFRYLAEKLQEIGITEVDGILFDLGVSSPQLDTPERGFSYHHDAPL 123 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM ++A DVVN + + L RI GEEK + +IA I R++ +TT +L Sbjct: 124 DMRMDQDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTGELV 183 Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 LI++ + ++ HPA R FQA+RI VN+E++ + L SA + +K GG + V++FH Sbjct: 184 ELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRVSVITFH 243 Query: 252 SLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+ K F S + ++ +IP P + + IT+K ++P+ ++ N R+RSA Sbjct: 244 SLEDRICKTTFKRNSTTPQLPPGLPIIPDEFKPKL-KLITRKPILPSDIELEENNRARSA 302 Query: 310 KLR 312 KLR Sbjct: 303 KLR 305 >gi|325275020|ref|ZP_08141013.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas sp. TJI-51] gi|324099848|gb|EGB97701.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas sp. TJI-51] Length = 315 Score = 189 bits (480), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 120/309 (38%), Positives = 179/309 (57%), Gaps = 22/309 (7%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMG--SNVIALDRDPFAVSCGQ 75 +H+ VLL++ + L LD TFG GG+SR K+G ++ D+DP A++ GQ Sbjct: 8 NHITVLLDEAVEALALRADGCYLDGTFGRGGHSRLILSKLGPQGRLLGFDKDPQAIATGQ 67 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +F + Q +F++L V ++G V GV+ DLGVSS Q+D +RGFSF G Sbjct: 68 -ALAAEDGRFVIVQRSFAELGAEVAERGLHGKVSGVLLDLGVSSPQLDDPERGFSFLNDG 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ G+SA++ + A V+++ R+ GEE+ A R+A A+V+RR+ PF T D Sbjct: 127 PLDMRMNPDQGVSAAEFIATAPVEEIARVFKEYGEERFAGRMARAVVERREKQPFTRTAD 186 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ ++ K + +PATR+FQ LRI VNNE+ +L GL +A AL+ GG L V+SF Sbjct: 187 LAEVL-KVANPAWEKGKNPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLAVISF 245 Query: 251 HSLEDRLVKKFF-------ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 HSLEDR+VK F A + + V+H + P V + K ++ ++ N Sbjct: 246 HSLEDRIVKLFMRKLVKGEADNLPRNLPVQHKV---FEPKV--KLIGKAQFASEAELKAN 300 Query: 304 RRSRSAKLR 312 RSRSA +R Sbjct: 301 PRSRSAVMR 309 >gi|225872742|ref|YP_002754199.1| S-adenosyl-methyltransferase MraW [Acidobacterium capsulatum ATCC 51196] gi|263433378|sp|C1F466|RSMH_ACIC5 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|225792322|gb|ACO32412.1| S-adenosyl-methyltransferase MraW [Acidobacterium capsulatum ATCC 51196] Length = 297 Score = 189 bits (480), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 121/305 (39%), Positives = 173/305 (56%), Gaps = 28/305 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HVPVLL+ I LN G DAT G G+S + ++ G +IA DRDP A+ + Sbjct: 6 HVPVLLQDAIRYLNVRRGGTYADATLGLAGHSSAIARLLGPGGTLIAFDRDPEAMELAKS 65 Query: 77 TMRDYKEQFS-------LFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 + + + L FS+ +D + +DG++ D GVSS+Q D RGFSFQ Sbjct: 66 RLDALRAELGSEMPKVILHSTEFSEAEDLIEPGSLDGLLADFGVSSLQFDEAHRGFSFQA 125 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM+ G++A+ VVNQ K+L ++ GEE+++ RIA AIV+ R P TT Sbjct: 126 DGPLDMRMNPRVGLTAAQVVNQFGEKELADLIYEFGEERRSRRIARAIVRAR---PVSTT 182 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ ++ K+ RIHPATR+FQALRI+VN E+ ++ L+ A K L+ GG L+V+ Sbjct: 183 AQLARVVSAAAPAMKSERIHPATRTFQALRIYVNQELGQIEALLKVAPKLLRKGGRLVVI 242 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDR+ K A R G +++ +T+K + +E+ N R+RS Sbjct: 243 SFHSLEDRIAKD--ALREG------------GQQGIYEVLTRKPLTAGEEETDRNPRARS 288 Query: 309 AKLRA 313 AKLRA Sbjct: 289 AKLRA 293 >gi|51892339|ref|YP_075030.1| S-adenosyl-methyltransferase MraW [Symbiobacterium thermophilum IAM 14863] gi|116241373|sp|Q67Q57|RSMH_SYMTH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|51856028|dbj|BAD40186.1| putative S-adenosylmethionine-dependent methyltransferase [Symbiobacterium thermophilum IAM 14863] Length = 318 Score = 189 bits (480), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 113/304 (37%), Positives = 173/304 (56%), Gaps = 11/304 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H+PVLL++ + L PG +D T G GG++ + S +I LD+D A+ + Sbjct: 5 HIPVLLQETMEALAVRPGGTYIDCTVGGGGHAAEILRRSSPDGRLIGLDQDENALRAAGD 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + ++ +L + F + D G+ DGV+ D+GVSS Q D G+RGFS+ PL Sbjct: 65 RLAPFGDRVTLVRTNFEHVADVADRLGLGAADGVLMDIGVSSHQFDEGERGFSYHHDAPL 124 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM ++A+ +VN+ +++ R++ GEE+ ASRIA IV+ R+ P +TT L Sbjct: 125 DMRMDRTRPLTAAVLVNEWEEEEIARVIREYGEERWASRIAQFIVRARRQRPIETTGQLV 184 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + S + HPA R+FQA+RI VN+E+ L +GL A + L+ GG L V++FH Sbjct: 185 EIIKAAIPASARREGGHPARRTFQAIRIAVNDELGALERGLEGALRVLRPGGRLAVITFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK+ FA R K +P + + +T+K V + +V N RSRSA Sbjct: 245 SLEDRIVKQTFA-RWAKPCTCPPDLPVCVCGKAPLAEPVTRKPVRASGAEVKANPRSRSA 303 Query: 310 KLRA 313 LRA Sbjct: 304 TLRA 307 >gi|302391523|ref|YP_003827343.1| S-adenosyl-methyltransferase MraW [Acetohalobium arabaticum DSM 5501] gi|302203600|gb|ADL12278.1| S-adenosyl-methyltransferase MraW [Acetohalobium arabaticum DSM 5501] Length = 311 Score = 189 bits (480), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 118/312 (37%), Positives = 179/312 (57%), Gaps = 19/312 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQ 75 +H+PVLL + I LL+ + +D T G GG++ K+ ++ +I +D+D A+ + Sbjct: 4 EHIPVLLTETIELLDCKEDGIYVDCTVGGGGHAVEIADKLTTDGTLIGIDQDLAAIEAAK 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E++ + + + L + + + + G VDG++FDLG SS QID RGFS+Q P Sbjct: 64 ESLSNAECKVELVRDNYKNIDRVLNRFGIDSVDGLLFDLGFSSHQIDTAQRGFSYQYEAP 123 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + +A+D+VN + +LT I+ GEEK ASRIA IV+ RQ PF+ T +L Sbjct: 124 LDMRMDQRASRTAADLVNDLSQSELTDIIAEYGEEKWASRIAEFIVRYRQDKPFKLTTEL 183 Query: 192 SSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 I+ + ++ + HPA R+FQALRI VNNE+E L + L LK+GG + ++F Sbjct: 184 VETIKAAIPAGARRSGPHPAKRTFQALRIAVNNELEVLTKTLDKIVPLLKSGGRMAFITF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSN------AHPAVFQSITKKVVVPTQEDVAFNR 304 HSLEDR+VK F K +A + P + A + ITKK + Q+++ N Sbjct: 244 HSLEDRIVKHKF-----KELAQDCICPPDFPVCACDEEAEVEIITKKPITAQQKEIDDNP 298 Query: 305 RSRSAKLRAGMR 316 R+RSAKLRA + Sbjct: 299 RARSAKLRAAEK 310 >gi|16273056|ref|NP_439288.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae Rd KW20] gi|145630229|ref|ZP_01786011.1| S-adenosyl-methyltransferase [Haemophilus influenzae R3021] gi|260580214|ref|ZP_05848044.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae RdAW] gi|260581821|ref|ZP_05849617.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae NT127] gi|1175483|sp|P45057|RSMH_HAEIN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|1574685|gb|AAC22785.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20] gi|144984510|gb|EDJ91933.1| S-adenosyl-methyltransferase [Haemophilus influenzae R3021] gi|260093498|gb|EEW77431.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae RdAW] gi|260095014|gb|EEW78906.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae NT127] Length = 321 Score = 189 bits (480), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 128/318 (40%), Positives = 182/318 (57%), Gaps = 30/318 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQE 76 H+ VLL + + L + +D TFG GG+SR ++ SN +IA+DRDP A++ + Sbjct: 12 HITVLLHEAVNGLALKENGIYIDGTFGRGGHSRFILSQLSSNGRLIAVDRDPRAIAEAHK 71 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++D + F + +FS + + + DK +DG++ DLGVSS Q+D +RGFSF K G Sbjct: 72 -IQDLR--FQIEHNSFSHIPE-ICDKLNLVGKIDGILLDLGVSSPQLDEAERGFSFMKDG 127 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP------ 184 PLDMRM + G+SA + + Q +++DLT +L GEE+ A RIA AIV +SA Sbjct: 128 PLDMRMDTTQGLSAEEWLKQVSIEDLTWVLKTFGEERFAKRIATAIVDFNKSAVKNGTEF 187 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 T L+ LI + V F K+ HPATRSFQA+RIF+N+E++EL L SA L G Sbjct: 188 LSRTSQLAELISQAVPF-KDKHKHPATRSFQAIRIFINSELDELESLLNSALDMLAPEGR 246 Query: 245 LIVVSFHSLEDRLVKKFFASRSG-----KVMAVRH-MIPSNAHPAVFQSITKKVVVPTQE 298 L ++SFHSLEDR+VK F +S K + +R I N I K + P+ Sbjct: 247 LSIISFHSLEDRMVKHFMKKQSKGEDIPKGLPLREDQIQRNQK----LRIIGKAIQPSDA 302 Query: 299 DVAFNRRSRSAKLRAGMR 316 ++ N RSRSA LR R Sbjct: 303 EIQANPRSRSAILRVAER 320 >gi|84394442|ref|ZP_00993158.1| S-adenosyl-methyltransferase [Vibrio splendidus 12B01] gi|84374941|gb|EAP91872.1| S-adenosyl-methyltransferase [Vibrio splendidus 12B01] Length = 316 Score = 189 bits (480), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 118/309 (38%), Positives = 176/309 (56%), Gaps = 20/309 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H+ VLL + I L P +D TFG GG+SR+ K+G N + ++DRDP A++ Q+ Sbjct: 7 HISVLLNESIDGLAIKPDGTYIDGTFGRGGHSRTILSKLGENGRLFSIDRDPQAIAEAQK 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +F++ FS + +Y VDGV+ DLGVSS Q+D +RGFSF K GP Sbjct: 67 I---DDPRFTIIHGPFSGMAEYAERYDLVGQVDGVLLDLGVSSPQLDDAERGFSFMKDGP 123 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV---KRRQSAPFQTT 188 LDMRM +G+ S + +A++ D+T ++ GE+K A RIA I+ + ++ P T Sbjct: 124 LDMRMDPTTGVPVSQWLVEADLDDITWVIREFGEDKHARRIAKGIIAYQENEENEPLTRT 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ LI S + HPATR+FQA RI++N+E+EE+ L+ A L G + V+ Sbjct: 184 GQLAKLISDVAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAASILAPQGRISVI 243 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITK---KVVVPTQEDVAFN 303 SFHSLEDR+VK+F S + V H +P + A+ + K K + P++++V N Sbjct: 244 SFHSLEDRMVKRFIRKES-QGPQVPHGLPLTEDQIKALGSADLKPIGKAIKPSKDEVDEN 302 Query: 304 RRSRSAKLR 312 RSRS+ LR Sbjct: 303 TRSRSSVLR 311 >gi|332160404|ref|YP_004296981.1| S-adenosyl-methyltransferase MraW [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325664634|gb|ADZ41278.1| S-adenosyl-methyltransferase MraW [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 303 Score = 189 bits (479), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 120/309 (38%), Positives = 180/309 (58%), Gaps = 19/309 (6%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQETMRD 80 +L++ + LN + +D TFG GG+SR ++G +IA+DRDP A+ + Sbjct: 1 MLDEAVNGLNIRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDRDPQAIEAAKSIT-- 58 Query: 81 YKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 +FS+ FS L YV + ++GV+ DLGVSS Q+D +RGFSF + GPLDMR Sbjct: 59 -DPRFSIVHGPFSDLAHYVRELDLVGRINGVLLDLGVSSPQLDDPERGFSFMRDGPLDMR 117 Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M + GISA++ + +A+ D+ +L GEE+ A R+A AIV+R + P T++L+ LI Sbjct: 118 MDPTRGISAAEWLMKASADDIAWVLKTFGEERFAKRLAKAIVERNLTQPMTRTKELADLI 177 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 F + ++ HPATRSFQA+RI++N+E+EE+ + L A + L G L V+SFHSLED Sbjct: 178 ANASPFREKHK-HPATRSFQAIRIYINSELEEIERTLDGALEVLAPEGRLSVISFHSLED 236 Query: 256 RLVKKFFA--SRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRSRSAK 310 R+VK F SR +V A + + +S+ K ++P +VA N R+RS+ Sbjct: 237 RIVKNFIRHHSRGPQVPAGLPLTEAQLRSMGGRTLKSVGK--MMPPDAEVAENPRARSSV 294 Query: 311 LRAGMRTVE 319 LR R E Sbjct: 295 LRFAERIKE 303 >gi|296393499|ref|YP_003658383.1| S-adenosyl-methyltransferase MraW [Segniliparus rotundus DSM 44985] gi|296180646|gb|ADG97552.1| S-adenosyl-methyltransferase MraW [Segniliparus rotundus DSM 44985] Length = 319 Score = 189 bits (479), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 111/300 (37%), Positives = 175/300 (58%), Gaps = 7/300 (2%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74 HVPVLL +V+ LL PA P V++DAT G GG++++ + V+ +DRD A+ Sbjct: 8 HVPVLLHRVVQLLAPALSAPNPVLVDATLGLGGHTKALLERFPALRVVGVDRDEKAIEVA 67 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + + ++ A F +++ + D+ +G + DLGVSSMQ+D RGF++ K PLD Sbjct: 68 RARLGALADRVRFVHARFDEVEHALGDEAANGYLLDLGVSSMQLDQAQRGFAYSKEAPLD 127 Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM S ++A++V+ ++L R+L GEE+ ASRIA AIV+RR +AP ++ +L Sbjct: 128 MRMDSSAELTAAEVLATYEERELARVLRTYGEERFASRIAAAIVRRRSTAPLSSSAELVR 187 Query: 194 LIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 LI + +K HPA R+FQALR+ VN+E+ L L A AL G ++V+++ S Sbjct: 188 LIDDAIPAKAKRTGGHPAKRTFQALRVEVNDELGSLRAALPKALAALAPSGRIVVLAYQS 247 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK+ FA + + + A F S+T+ + + E++A N R+ S +LR Sbjct: 248 LEDRIVKEAFARATTSRTPIGLPVELPGFAAEFVSLTRGAELASDEEIAQNSRAASVRLR 307 >gi|18310847|ref|NP_562781.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens str. 13] gi|20138978|sp|Q8XJ96|RSMH_CLOPE RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|18145529|dbj|BAB81571.1| conserved hypothetical protein [Clostridium perfringens str. 13] Length = 310 Score = 189 bits (479), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 119/308 (38%), Positives = 176/308 (57%), Gaps = 22/308 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 HV VLL++ I LN + +D T G G+S K S+ +I D+D A+ E Sbjct: 5 HVSVLLDECINALNIKEDGIYVDCTLGGAGHSSEIVKRLSSDGRLIRFDQDKDALKAAGE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++DYK + + F + D + D GVDG++ DLGVSS Q+D G+RGFS+ + PL Sbjct: 65 RLKDYK-NVTYVHSNFYAIYDVLTDLGIDGVDGILMDLGVSSYQLDNGERGFSYMQDAPL 123 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ SA ++VN + ++L RI+ GEEK A RIA IVK R+ +TT +L Sbjct: 124 DMRMNRENEFSAYEIVNTYSEEELYRIIKEYGEEKFAKRIASFIVKNREEKNIETTLELV 183 Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + ++ HPA R+FQA+RI VN E+E +++ + K L GG + +++FH Sbjct: 184 EIIKAAIPAKARREGPHPAKRTFQAIRIEVNKELEIISKTILDGVKKLNKGGRMAIITFH 243 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPS-------NAHPAVFQSITKKVVVPTQEDVAFNR 304 SLEDR+VK F K +A PS N P V + I++K + ++E++ FN Sbjct: 244 SLEDRIVKNTF-----KELANPCTCPSEFPVCVCNRKPEV-KLISRKPIEASKEELEFNP 297 Query: 305 RSRSAKLR 312 RSRSAKLR Sbjct: 298 RSRSAKLR 305 >gi|90580220|ref|ZP_01236027.1| S-adenosyl-methyltransferase [Vibrio angustum S14] gi|90438522|gb|EAS63706.1| S-adenosyl-methyltransferase [Vibrio angustum S14] Length = 315 Score = 189 bits (479), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 122/315 (38%), Positives = 183/315 (58%), Gaps = 23/315 (7%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQ 75 +HV VLL + + L P + +D TFG GG+SR +G N + ++DRDP A++ Q Sbjct: 6 EHVSVLLNESVDGLAIKPDGIYIDGTFGRGGHSRLILSHLGENGRLYSIDRDPQAIAEAQ 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +F + FS ++ Y+ ++ VDGV+ DLGVSS Q+D +RGFSF + G Sbjct: 66 KI---DDPRFEIIHGPFSGMEKYMEERDLIGRVDGVLLDLGVSSPQLDDAERGFSFMRDG 122 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---PFQT 187 PLDMRM SG SA++ + +A D+ +L GEE+ A RIA IV+ R++ P Sbjct: 123 PLDMRMDPTSGQSAAEWLAEAEADDIAWVLKEFGEERFAKRIARGIVEHRENPEKEPLTR 182 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T++L+SLI F K+ HPATRSFQA+RI++N+E++E+ L A L G L V Sbjct: 183 TRELASLIAAVSPF-KDKHKHPATRSFQAIRIYINSELDEIETALNGAVNILAPEGRLSV 241 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH------PAVFQSITKKVVVPTQEDVA 301 +SFHSLEDR+VK+F +S K V +P A +++ K + P+Q+++ Sbjct: 242 ISFHSLEDRMVKRFIRKQS-KGPEVPAGLPLTEEQIKALGSAALKTLG-KAIKPSQDELG 299 Query: 302 FNRRSRSAKLRAGMR 316 +N R+RS+ LR R Sbjct: 300 YNTRARSSVLRLAER 314 >gi|332528826|ref|ZP_08404800.1| 16S rRNA m(4)C1402 methyltranserfase [Hylemonella gracilis ATCC 19624] gi|332041685|gb|EGI78037.1| 16S rRNA m(4)C1402 methyltranserfase [Hylemonella gracilis ATCC 19624] Length = 320 Score = 189 bits (479), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 126/313 (40%), Positives = 185/313 (59%), Gaps = 21/313 (6%) Query: 20 HVPVLL-EKVIALLN-----PAPGKV----ILDATFGAGGYSR---SFCKMGSNVIALDR 66 H VLL E V ALLN P K +DATFG GG+SR S + + A D+ Sbjct: 7 HTTVLLNEAVDALLNRPVELPDSLKTEDGHYVDATFGRGGHSRLLLSRLAPQARLTAFDK 66 Query: 67 DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126 DP AV+ Q+ ++ +FS+ F+ L + +P + GV+ DLG+SS QID RGFS Sbjct: 67 DPQAVAEAQKIVQS-DARFSIRHQGFAHLNE-LPTQSCQGVLMDLGISSPQIDDPARGFS 124 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA-P 184 F+ GPLDMRM + G S ++ + A V+++ ++ GEE+ A IA AIV+RRQ+ P Sbjct: 125 FRAEGPLDMRMDPTRGRSVAEWLMSAEVREIAEVIRDYGEERFAGPIAKAIVERRQAGRP 184 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 TT +L+ L+ V + + +PATR+FQA RIF+N E+EEL L ++ L+ GG Sbjct: 185 LATTAELAQLVAGAVKTREPGQ-NPATRTFQAFRIFINAELEELQAALEASLDVLQTGGR 243 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 L+V+SFHSLEDR+VK+F A + +V R + P +++ + V P++ +VA N Sbjct: 244 LVVISFHSLEDRIVKQFIARHAREVYDRRAPFAAPT-PTRLRAVER--VRPSEAEVAANP 300 Query: 305 RSRSAKLRAGMRT 317 R+RSA +R +RT Sbjct: 301 RARSAIMRVAVRT 313 >gi|303327356|ref|ZP_07357797.1| S-adenosyl-methyltransferase MraW [Desulfovibrio sp. 3_1_syn3] gi|302862296|gb|EFL85229.1| S-adenosyl-methyltransferase MraW [Desulfovibrio sp. 3_1_syn3] Length = 328 Score = 189 bits (479), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 119/314 (37%), Positives = 172/314 (54%), Gaps = 12/314 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77 HVPVL + + L P G LD T G GG++ + GS + LDRD A+ + Sbjct: 16 HVPVLPAETLEALAPRAGGRYLDGTLGMGGHAAAVLSAAPGSELCGLDRDEQALDLARAR 75 Query: 78 MRDYKEQFSLFQATFSQ----LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + + F +S+ L++ DK VDG + D+GVSS+Q+D +RGFSF GPL Sbjct: 76 LAPFGGRAHFFHCRYSRFAEALKELQWDK-VDGALLDIGVSSLQLDENERGFSFYGDGPL 134 Query: 134 DMRMS--CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 DMRM +SA VN+ + L + LGEE QA RIA IV+ RQ AP +T +L Sbjct: 135 DMRMDQHSGELSAWHWVNRESFARLKECIATLGEEPQAGRIARVIVEARQKAPIDSTAEL 194 Query: 192 SSLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 ++L++K + R HPATR+FQALR+ VN+E+ EL + L L GG L V++ Sbjct: 195 AALVEKAYPPAWRAKARRHPATRTFQALRMAVNDELGELRRFLDQILAWLPVGGRLAVIT 254 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK+ + RH+ + H + + KK + E++A N R+ S Sbjct: 255 FHSLEDRMVKQAMRHWAEGCRCPRHVPVCVCRHQPEVRILHKKPLQAGSEELAVNPRAGS 314 Query: 309 AKLRAGMRTVERSI 322 AKLRA + E ++ Sbjct: 315 AKLRAVEKIAEAAV 328 >gi|317057677|ref|YP_004106144.1| S-adenosyl-methyltransferase MraW [Ruminococcus albus 7] gi|315449946|gb|ADU23510.1| S-adenosyl-methyltransferase MraW [Ruminococcus albus 7] Length = 311 Score = 189 bits (479), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 113/299 (37%), Positives = 167/299 (55%), Gaps = 8/299 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77 H+PVLL + I L+ P + D T G G+SR K +I++DRDP AV+ E Sbjct: 5 HIPVLLNECIEGLDIKPDGIYCDGTAGGAGHSREIAKRLTTGRLISVDRDPEAVAVATER 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + ++ + +S+L + +G DG++ DLGVSS Q+D +RGFS+ PLD Sbjct: 65 LSGLPA--TVVRGNYSELDEIFARLGIEGADGILMDLGVSSYQLDNAERGFSYHTDAPLD 122 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRMS G+SA DVVN + + L RI+ G+EK + IA IV+ R+ P +TT +L+ + Sbjct: 123 MRMSSEGLSARDVVNSYDERTLARIIFEYGDEKFSRNIAKKIVQVREDKPIETTLELAEV 182 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 I+ V +P ++FQA+RI VN E+E L+ L A L AGG L +++FHSLE Sbjct: 183 IKSAVPQKVRREKNPCKKTFQAIRIEVNAELEHLSIALDKAFDLLNAGGRLCIITFHSLE 242 Query: 255 DRLVKKFFAS-RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 DRLVK+ F S G + + + IT+K + P+ + N+R+ SAKLR Sbjct: 243 DRLVKQRFKSFCQGCICPPDFPVCVCGRTPRGKLITRKPIEPSDSENEENKRAHSAKLR 301 >gi|257451725|ref|ZP_05617024.1| methyltransferase [Fusobacterium sp. 3_1_5R] Length = 313 Score = 189 bits (479), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 114/311 (36%), Positives = 180/311 (57%), Gaps = 22/311 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+PVL E+ + L P + +D T G G +S K S +I++D+D A++ ++ Sbjct: 9 HIPVLYEETLDQLVWNPDGIYIDCTLGGGSHSEGILKRLSEKGRLISIDQDANAIAFCKK 68 Query: 77 TMRDYKEQFSLFQATFSQLQ--DYVP--DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + Y +Q+S+FQ F + Y+ DK VDG++ D+GVSS Q+D G+RGFS++ Sbjct: 69 RLEKYGKQWSVFQNNFENIDIVSYLAGVDK-VDGILMDIGVSSTQLDDGERGFSYRYDAK 127 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ +SA +VVN +DL RIL GEE+ A +IA I + R+ P +TT +L Sbjct: 128 LDMRMNKEQDLSAYEVVNTYAEQDLVRILFEYGEERHAKKIASFICENRKEKPIETTGEL 187 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++I++ +S+ HPA ++FQA+RI VN E+E L + ++ + LK G L +++FH Sbjct: 188 VAIIKRA--YSERASKHPAKKTFQAIRIEVNRELEVLEKAIKKSVDLLKPKGHLAIITFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSN------AHPAVFQSITKKVVVPTQEDVAFNRR 305 SLEDRLVK F K +A P A + +TKK ++P+++++ N R Sbjct: 246 SLEDRLVKTVF-----KDLATACKCPPELPVCVCGGKAKVKILTKKPIIPSEDELGKNNR 300 Query: 306 SRSAKLRAGMR 316 + S+KLR R Sbjct: 301 AHSSKLRVVER 311 >gi|315586621|gb|ADU41002.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori 35A] Length = 308 Score = 189 bits (479), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 119/304 (39%), Positives = 178/304 (58%), Gaps = 20/304 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVSCGQET 77 H +LL++V+ P V++D T G GG+S++ K +I +D+D FA +E Sbjct: 8 HQSILLQEVLQAFAPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFAQEIAKER 67 Query: 78 MRDYKEQFSLFQATFSQ-----LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 ++ ++ +++L F++ L+ + DK + GV+ DLGVSS+Q+D +RGF+F S Sbjct: 68 LKAFEGRYNLLSGGFAKRFKEALETH--DKEIKGVLVDLGVSSLQLDDDNRGFNFH-SHA 124 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM G ++A V+N + L +I GE K+ +IAH I +RR PF+ +DL Sbjct: 125 LDMRMDLEGDLNAQKVINSYPMVALEKIFKDYGEIKEYKKIAHKIAERRTKKPFKDAKDL 184 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 S + SKN +IHPAT FQA+RI VN E+EEL + L+ A + LK G +L V+SFH Sbjct: 185 SDFLSS---LSKNKKIHPATLVFQAVRIEVNRELEELKEFLQCA-RNLK-GAILCVISFH 239 Query: 252 SLEDRLVKKFFASRSGKVMA---VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SLED LVK F + + SN H A+ + +TKK + P+ E++ NRRSRS Sbjct: 240 SLEDSLVKNAFKDYAKNCICDPLSFKCACSNNH-ALGEILTKKPITPSPEEIKNNRRSRS 298 Query: 309 AKLR 312 AK+R Sbjct: 299 AKMR 302 >gi|154485082|ref|ZP_02027530.1| hypothetical protein EUBVEN_02805 [Eubacterium ventriosum ATCC 27560] gi|149734035|gb|EDM50154.1| hypothetical protein EUBVEN_02805 [Eubacterium ventriosum ATCC 27560] Length = 311 Score = 189 bits (479), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 110/304 (36%), Positives = 180/304 (59%), Gaps = 13/304 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 HV VLL + I LN P + +D T G GG+S CK S+ +I +D+D A+ +E Sbjct: 5 HVSVLLNETIDGLNINPDGIYVDGTLGGGGHSYEICKRLSDKGRLIGIDQDGEALEAARE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +++++++ +L ++ + ++ + D + VDG+V DLGVSS Q+D +RGFS++ PL Sbjct: 65 RLKEFEDKITLVRSNYCEIDTILKDLEIEKVDGIVLDLGVSSYQLDNLERGFSYKSDAPL 124 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM +A+DVVN + +L RI+ GE+K A IA IV R+ P +TT +LS Sbjct: 125 DMRMDQRQNKTAADVVNNYSENELFRIIRDYGEDKFAKNIAKHIVMARKEKPLETTAELS 184 Query: 193 SLIQKTV---YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 +I+ ++ + +K HPA ++FQA+RI VN E+ L + L + L GG + V++ Sbjct: 185 EIIKASIPMKFQAKGG--HPAKKTFQAIRIEVNQELTVLKESLDTMIDHLNPGGRICVIT 242 Query: 250 FHSLEDRLVK-KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+ K KF + + + + + IT+K ++P++E++ N+RS+S Sbjct: 243 FHSLEDRITKIKFRENENPCTCPPDFPVCVCGKVSKGKVITRKPIIPSEEEMTENKRSKS 302 Query: 309 AKLR 312 +KLR Sbjct: 303 SKLR 306 >gi|229815097|ref|ZP_04445434.1| hypothetical protein COLINT_02139 [Collinsella intestinalis DSM 13280] gi|229809327|gb|EEP45092.1| hypothetical protein COLINT_02139 [Collinsella intestinalis DSM 13280] Length = 325 Score = 189 bits (479), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 121/312 (38%), Positives = 179/312 (57%), Gaps = 18/312 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYS-RSFCKMGSN--VIALDRDPFAVSCGQE 76 H PV+L++V+ L PG V+ D T G G+S R ++GS ++ +D+D A++ + Sbjct: 16 HEPVMLQEVLEQLQLKPGSVVCDCTLGGAGHSVRMAERVGSEGLLLGVDQDDMALAAAGK 75 Query: 77 TM--RDYKEQFSLFQATFSQLQDY-----VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 + L + F L + VP GVDG +FDLGVSS Q+D RGFS+ + Sbjct: 76 RLDAEAPDTPHKLLKGNFGDLDELLCSAQVP--GVDGFLFDLGVSSPQLDIPGRGFSYNE 133 Query: 130 SGPLDMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 PLDMRM + ++A++V+N DL RIL I GEEK A +IA +V+RRQ +P + Sbjct: 134 DAPLDMRMDPGTNTLNAAEVLNTYTEADLARILRIYGEEKFARQIAREVVRRRQESPLVS 193 Query: 188 TQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T D I+ + ++ + HPA RSFQA+RI VN+E++ L +GL +A + L GG + Sbjct: 194 TGDFVDAIKAGIPAAARRHGGHPAKRSFQAIRIEVNHELDVLERGLEAAIRWLNPGGRVC 253 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNR 304 V+S+HSLEDR+VK+ F S K IP + + + T+K +V T E+V N Sbjct: 254 VISYHSLEDRIVKRLFQELS-KGCTCPPDIPVCVCGNVPIVKVTTRKPLVATAEEVERNP 312 Query: 305 RSRSAKLRAGMR 316 R+RSAK+R R Sbjct: 313 RARSAKIRCAER 324 >gi|15676324|ref|NP_273460.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis MC58] gi|20139199|sp|Q9K0Z0|RSMH_NEIMB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|7225634|gb|AAF40850.1| conserved hypothetical protein [Neisseria meningitidis MC58] gi|325140926|gb|EGC63433.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis CU385] Length = 328 Score = 189 bits (479), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 118/306 (38%), Positives = 173/306 (56%), Gaps = 10/306 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMG--SNVIALDRDPFAVSCGQE 76 H+ VLL + + L V +D TFG GG+SR ++G +I D+DP A++ +E Sbjct: 9 HITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFDKDPQAIAVAEE 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 R K + + F+ Q + G VDG +FDLG+SS QID G RGFSF+ PL Sbjct: 69 LARSDK-RVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGSRGFSFRFDAPL 127 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + G+SA++ + A+ +DL ++ GEE+ + RIA AIV +R +P TT+ L+ Sbjct: 128 DMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRRIARAIVAQRAESPIDTTRKLA 187 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++ + V + + PATR+FQA+RIF+N E+EE+ L LK GG L V++FHS Sbjct: 188 QIVAQNVRTRERGQ-DPATRTFQAVRIFINRELEEVGAVLPQVMCRLKEGGRLAVIAFHS 246 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK+F S R A P + I + + P + ++A N R+RSA L Sbjct: 247 LEDRIVKQFVKKYSQHAPLPRWAAVREADLPELPLKIVGRALKPGEAEIAANPRARSAVL 306 Query: 312 RAGMRT 317 R RT Sbjct: 307 RVAERT 312 >gi|317058284|ref|ZP_07922769.1| S-adenosyl-methyltransferase mraW [Fusobacterium sp. 3_1_5R] gi|313683960|gb|EFS20795.1| S-adenosyl-methyltransferase mraW [Fusobacterium sp. 3_1_5R] Length = 318 Score = 189 bits (479), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 114/311 (36%), Positives = 180/311 (57%), Gaps = 22/311 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+PVL E+ + L P + +D T G G +S K S +I++D+D A++ ++ Sbjct: 14 HIPVLYEETLDQLVWNPDGIYIDCTLGGGSHSEGILKRLSEKGRLISIDQDANAIAFCKK 73 Query: 77 TMRDYKEQFSLFQATFSQLQ--DYVP--DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + Y +Q+S+FQ F + Y+ DK VDG++ D+GVSS Q+D G+RGFS++ Sbjct: 74 RLEKYGKQWSVFQNNFENIDIVSYLAGVDK-VDGILMDIGVSSTQLDDGERGFSYRYDAK 132 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ +SA +VVN +DL RIL GEE+ A +IA I + R+ P +TT +L Sbjct: 133 LDMRMNKEQDLSAYEVVNTYAEQDLVRILFEYGEERHAKKIASFICENRKEKPIETTGEL 192 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++I++ +S+ HPA ++FQA+RI VN E+E L + ++ + LK G L +++FH Sbjct: 193 VAIIKRA--YSERASKHPAKKTFQAIRIEVNRELEVLEKAIKKSVDLLKPKGHLAIITFH 250 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSN------AHPAVFQSITKKVVVPTQEDVAFNRR 305 SLEDRLVK F K +A P A + +TKK ++P+++++ N R Sbjct: 251 SLEDRLVKTVF-----KDLATACKCPPELPVCVCGGKAKVKILTKKPIIPSEDELGKNNR 305 Query: 306 SRSAKLRAGMR 316 + S+KLR R Sbjct: 306 AHSSKLRVVER 316 >gi|170720122|ref|YP_001747810.1| S-adenosyl-methyltransferase MraW [Pseudomonas putida W619] gi|262825121|sp|B1J1Y2|RSMH_PSEPW RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|169758125|gb|ACA71441.1| S-adenosyl-methyltransferase MraW [Pseudomonas putida W619] Length = 315 Score = 189 bits (479), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 119/309 (38%), Positives = 179/309 (57%), Gaps = 22/309 (7%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMG--SNVIALDRDPFAVSCGQ 75 +H+ VLL++ + L LD TFG GG+SR K+G ++ D+DP A++ GQ Sbjct: 8 NHITVLLDEAVEALALRADGCYLDGTFGRGGHSRLILSKLGPQGRLLGFDKDPQAIATGQ 67 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +F + Q +F++L V ++G V G++ DLGVSS Q+D +RGFSF G Sbjct: 68 -ALAAEDGRFVIVQRSFAELGAEVAERGLAGKVSGILLDLGVSSPQLDDPERGFSFLNDG 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ GISA++ + A V+++ R+ GEE+ A R+A A+V+RR+ PF T D Sbjct: 127 PLDMRMNPDQGISAAEFIATAPVEEIARVFKEYGEERFAGRMARAVVERREKQPFTRTAD 186 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ ++ K + +PATR+FQ LRI VNNE+ +L GL +A AL+ GG L V+SF Sbjct: 187 LAEVL-KVANPAWEKGKNPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLAVISF 245 Query: 251 HSLEDRLVKKFF-------ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 HSLEDR+VK F A + + V+H + P + + K ++ ++ N Sbjct: 246 HSLEDRIVKLFMRKLVKGEADNLPRNLPVQHKV---FEPKI--RLIGKAQFASEAELKAN 300 Query: 304 RRSRSAKLR 312 RSRSA +R Sbjct: 301 PRSRSAVMR 309 >gi|295394731|ref|ZP_06804946.1| S-adenosyl-methyltransferase MraW [Brevibacterium mcbrellneri ATCC 49030] gi|294972327|gb|EFG48187.1| S-adenosyl-methyltransferase MraW [Brevibacterium mcbrellneri ATCC 49030] Length = 362 Score = 189 bits (479), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 120/319 (37%), Positives = 177/319 (55%), Gaps = 26/319 (8%) Query: 20 HVPVLLEKVIALLNP----------APGKVILDATFGAGGYSRSFCKMGSNV--IALDRD 67 HVPVLL+ + LL AP V++D T G GG+S ++ +V I +DRD Sbjct: 44 HVPVLLDMCVELLGHGIEEARARGIAP--VVIDFTLGMGGHSEGILRVFDDVHVIGIDRD 101 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRG 124 P A+ + + +F + + + + +G + GV+FDLGVSS+Q+D RG Sbjct: 102 PAAIEIATSRLAPFGSRFEAVCTSDDNISEVLEQRGNPPISGVLFDLGVSSLQLDDDARG 161 Query: 125 FSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 FS+ + PLDMRM+ GISA+DV+ + DLTRI+ GEE+ A RIA AIV R+ Sbjct: 162 FSYSRDTPLDMRMNPTEGISAADVLATYSENDLTRIISTYGEERYARRIARAIVADREHT 221 Query: 184 PFQTTQDLSSLIQKTVYFSKNN--RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 P+ +TQ L+ LI + V KN R HPA R+FQALRI VN+E+ + + L +A AL Sbjct: 222 PWTSTQQLADLIGRIVPDPKNQRKRSHPAKRTFQALRIEVNDELGNITRSLPAALSALHL 281 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVR---HMIPSNAHPAVFQSITKKVVVPTQE 298 GG+ +V S+ S ED +VK+ F R G + ++P + P + I + QE Sbjct: 282 GGVAVVESYQSGEDIIVKRIF--RQGTTVQAPPDLPVVPDHLKPW-LEEIVRGAYKAPQE 338 Query: 299 DVAFNRRSRSAKLRAGMRT 317 ++ N R+ S +LRA +T Sbjct: 339 EIDHNPRAASVRLRAVRKT 357 >gi|294501027|ref|YP_003564727.1| S-adenosyl-methyltransferase MraW [Bacillus megaterium QM B1551] gi|294350964|gb|ADE71293.1| S-adenosyl-methyltransferase MraW [Bacillus megaterium QM B1551] Length = 311 Score = 189 bits (479), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 118/305 (38%), Positives = 176/305 (57%), Gaps = 13/305 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 +H VLL++ LN P V +D T G G+S K S +IA D+D A++ + Sbjct: 3 NHTTVLLKEAAEGLNIKPDGVYVDCTLGGAGHSEYIVKQLSEKGKLIAFDQDDVALANAK 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + Y ++ L ++ F L++ + G VDGV+FDLGVSS Q+D +RGFSF P Sbjct: 63 EKLAPYLDRVILIKSNFRYLKEQLMKHGIEEVDGVLFDLGVSSPQLDTPERGFSFHHDAP 122 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S SA +VVN+ + L +I GEEK + +IA I R+S P +TT +L Sbjct: 123 LDMRMDQNSMFSAYNVVNEWPYEKLVKIFFQYGEEKFSKQIARKIEAYRESKPIETTLEL 182 Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 LI+ + ++ HPA R FQA+RI VN+E++ + A +K GG + V++F Sbjct: 183 VDLIKDGIPAPARRTGGHPAKRIFQAIRIAVNDELQVFEDAIEQAMDVIKKGGRVSVITF 242 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH---MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 HSLEDR+ K F + S V + H +IP P + + IT+K ++P++E++ N+R+R Sbjct: 243 HSLEDRICKVAFKNAS-TVPQLPHGLPIIPEEFKPKM-KVITRKPILPSEEEIEENKRAR 300 Query: 308 SAKLR 312 SAKLR Sbjct: 301 SAKLR 305 >gi|220931744|ref|YP_002508652.1| S-adenosyl-methyltransferase MraW [Halothermothrix orenii H 168] gi|263456084|sp|B8CWI8|RSMH_HALOH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|219993054|gb|ACL69657.1| S-adenosyl-methyltransferase MraW [Halothermothrix orenii H 168] Length = 311 Score = 189 bits (479), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 119/317 (37%), Positives = 178/317 (56%), Gaps = 26/317 (8%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 +H PVLL++ + L + +DAT G GG++ K ++ VI +DRD A+ + Sbjct: 3 EHKPVLLKESLDYLKCKENGIYIDATLGRGGHTEEIIKAINDRGLVIGIDRDHEAIESVK 62 Query: 76 ETMRDY------KEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 + ++ Y + F+ Q K VDG++FDLGVSS Q D +RGFS++K Sbjct: 63 KRLKKYSSLRTVHDNFTNIPFILEQFNI----KAVDGMLFDLGVSSPQFDNPERGFSYRK 118 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM + ++A +VN + ++LT I GEE+ ASRIA+ I+K RQ P +TT Sbjct: 119 EGPLDMRMDKNQELTAEYIVNNFSHEELTNIFKEYGEERWASRIANFIIKSRQHKPIKTT 178 Query: 189 QDLSSLIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 L+++I+ + S + HPA R+FQALRI N+E+ L + + K LK GG + + Sbjct: 179 LQLTTIIKDAIPASARRKGGHPARRTFQALRIATNDELNILKKTINHVVKFLKPGGRICI 238 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSN------AHPAVFQSITKKVVVPTQEDVA 301 +SFHSLEDR+VKK F + +A + P + H + ITKK V P + +V Sbjct: 239 ISFHSLEDRIVKKTF-----RELARDCVCPPDFPECVCDHKRKLKIITKKPVKPGENEVE 293 Query: 302 FNRRSRSAKLRAGMRTV 318 N R+RSA+LR R + Sbjct: 294 NNPRARSARLRVAERVL 310 >gi|118468497|ref|YP_888512.1| S-adenosyl-methyltransferase MraW [Mycobacterium smegmatis str. MC2 155] gi|262825134|sp|A0R024|RSMH_MYCS2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|118169784|gb|ABK70680.1| S-adenosyl-methyltransferase MraW [Mycobacterium smegmatis str. MC2 155] Length = 326 Score = 189 bits (479), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 115/309 (37%), Positives = 179/309 (57%), Gaps = 15/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGK--------VILDATFGAGGYSRSFCK--MGSNVIALDRDPF 69 H+PVLL++ + LL PA + V++DAT GAGG+S F +I LDRDP Sbjct: 9 HIPVLLDRCVELLAPALTRTDPDGTEAVLVDATLGAGGHSERFLTDFPALRLIGLDRDPN 68 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFS 126 A++ + + + ++ +L + + + + + GV DGV+FDLGVSSMQ+D RGFS Sbjct: 69 ALAIAGDRLAPFGDRVTLVRTRYDGITSALAEAGVRRIDGVLFDLGVSSMQLDQKQRGFS 128 Query: 127 FQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 + PLDMRM + +A+++VN + K LTRIL GEE+ A RIA IV+RR PF Sbjct: 129 YSADAPLDMRMDPDALLTAAEIVNTYDAKTLTRILRDYGEERFAGRIADKIVRRRAKQPF 188 Query: 186 QTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 TT +L L+ + + ++ HPA R+FQALRI VN E++ L + +A AL+ GG Sbjct: 189 TTTSELVELLYEAIPAPARRTGGHPAKRTFQALRIAVNAELDSLRAAIPAALAALRPGGR 248 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 ++V+++ SLEDR+VK+ F++ + + H F ++T+ ++++ N Sbjct: 249 IVVMAYQSLEDRIVKQAFSTVTASRTPPGLPMELPGHEPEFVAVTRGAERADEQEIERNP 308 Query: 305 RSRSAKLRA 313 RS +LRA Sbjct: 309 RSAPVRLRA 317 >gi|217963812|ref|YP_002349490.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes HCC23] gi|290892188|ref|ZP_06555184.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL J2-071] gi|263456353|sp|B8DH88|RSMH_LISMH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|217333082|gb|ACK38876.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes HCC23] gi|290558311|gb|EFD91829.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL J2-071] gi|307571615|emb|CAR84794.1| S-adenosyl-methyltransferase [Listeria monocytogenes L99] Length = 312 Score = 189 bits (479), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 108/303 (35%), Positives = 175/303 (57%), Gaps = 11/303 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VLL + + +L P + +DAT G G+S ++ A D+D A+ + Sbjct: 4 HETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDNAKI 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + DY ++ + +A F +++ + ++G VDG+++DLGVSS Q+D +RGFS+ + L Sbjct: 64 KLADYSDKVTFIKANFRDMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQDAAL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM ++A VVN+ + +DL RI GEEK + +IA I +RR+ P +TT +L Sbjct: 124 DMRMDQEQELTAKTVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTGELV 183 Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + ++ HP R+FQA+RI VN+E+ + L A LK GG + V++FH Sbjct: 184 DIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLLKPGGRISVITFH 243 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+ K+ F A++ + +IP P F+ T+K +VP++E++ N R+RSA Sbjct: 244 SLEDRITKQLFQEATKGPDLPPGLPVIPDEYKPD-FKLATRKPIVPSEEELEQNNRARSA 302 Query: 310 KLR 312 KLR Sbjct: 303 KLR 305 >gi|300768848|ref|ZP_07078742.1| S-adenosyl-methyltransferase MraW [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300493581|gb|EFK28755.1| S-adenosyl-methyltransferase MraW [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 319 Score = 188 bits (478), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 118/307 (38%), Positives = 170/307 (55%), Gaps = 13/307 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQ 75 +H VLL + IA LN P + +D T G GG+SR + +G ++ + D+D A+ Q Sbjct: 5 EHTTVLLHEAIAALNVRPDGIYVDCTLGGGGHSREILQQLGLGGHLYSFDQDQTAIDYNQ 64 Query: 76 ETMRDYKE--QFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + Y E Q + ++ F+ L+ + +G VDGVV+DLGVSS Q D RGFS+Q Sbjct: 65 SNLATYLERGQVTFIKSNFANLKTELNARGLDHVDGVVYDLGVSSPQFDDAARGFSYQHD 124 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM S ++A VVN DL RI GEEK + ++A I + R P TT Sbjct: 125 APLDMRMDQSQKLTAQTVVNTWPYADLVRIFYRYGEEKFSKQVARLIERERAVQPIVTTG 184 Query: 190 DLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L +I+ + ++ HPA R FQA+RI VNNE+ L L A + G + V+ Sbjct: 185 QLVEIIKNAIPARARRTGGHPAKRVFQAIRIAVNNELGVLETSLEQAIDLINVHGRVSVI 244 Query: 249 SFHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 +F SLEDRLVK F S ++ +IP+ P ++ +++K VVP+ ++ NRR+ Sbjct: 245 TFQSLEDRLVKTIFKEHSDLPELPPGLPVIPAEMQPD-YRLVSRKPVVPSDAEIEANRRA 303 Query: 307 RSAKLRA 313 RSAKLRA Sbjct: 304 RSAKLRA 310 >gi|317177525|dbj|BAJ55314.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori F16] Length = 308 Score = 188 bits (478), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 120/304 (39%), Positives = 178/304 (58%), Gaps = 20/304 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVSCGQET 77 H VLL++V+ P V++D T G GG+S++ K +I +D+D FA +E Sbjct: 8 HQSVLLQEVLQAFVPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFAQEIAKER 67 Query: 78 MRDYKEQFSLFQATFSQ-----LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 ++ ++ +++L F++ L+ + +K + GV+ DLGVSS+Q+D +RGF+F S Sbjct: 68 LKAFEGRYNLLSGGFAKRFKEALETH--NKEIKGVLVDLGVSSLQLDDDNRGFNFH-SHA 124 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM G ++A V+N V L +I GE K+ +IAH I +RR PF+ +DL Sbjct: 125 LDMRMDLEGDLNAQKVINSYPVVALEKIFKDYGEIKEYKKIAHKITERRAKKPFKDAKDL 184 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 S + SKN +IHPAT FQA+RI VN E+EEL + L+ A + LK G +L V+SFH Sbjct: 185 SDFLSS---LSKNKKIHPATLVFQAVRIEVNRELEELKEFLQCA-RNLK-GAILCVISFH 239 Query: 252 SLEDRLVKKFFASRSGKVMA---VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SLED LVK F + + SN H A+ + +TKK + P+ E++ NRRSRS Sbjct: 240 SLEDALVKNAFKDYAKNCICNPLSFKCTCSNNH-ALGEILTKKPITPSPEEIKNNRRSRS 298 Query: 309 AKLR 312 AK+R Sbjct: 299 AKMR 302 >gi|320093982|ref|ZP_08025809.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Actinomyces sp. oral taxon 178 str. F0338] gi|319979088|gb|EFW10604.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Actinomyces sp. oral taxon 178 str. F0338] Length = 355 Score = 188 bits (478), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 118/323 (36%), Positives = 183/323 (56%), Gaps = 26/323 (8%) Query: 6 CKTMSSAIHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSN 60 C T ++A HT PVLL++ + +L PA PG V++DAT G GG++ + G Sbjct: 31 CNTRNAAELHT-----PVLLDECLDMLAPAIEGPGSVLIDATLGMGGHTEGALRRFPGLV 85 Query: 61 VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL----QDYVPDKGVDGVVFDLGVSSM 116 VI +DRDP AV+ + + + +F +AT+ + D+ P DGV+ DLGVSS+ Sbjct: 86 VIGIDRDPEAVALASKRLEGFGPRFLAVRATYDSIGQVVADHAPRGEADGVLMDLGVSSL 145 Query: 117 QIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175 Q+D +RGFS+ + PLDMRM + G+SA++++ A +++TRIL GEE+ A RIA Sbjct: 146 QLDDAERGFSYSQDAPLDMRMDPTRGVSAAELLATAPQEEITRILRAYGEERFAPRIARL 205 Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234 +V RR + P T L ++++ + ++ +PA R+FQALR+ VN+E+ L + L + Sbjct: 206 VVARRGAQPLTRTGQLVDIVREAIPAPARRTGGNPAKRTFQALRVAVNDELAILERALPA 265 Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVR---HMIPSNAHP--AVFQSIT 289 A +L+ GG L+V S+ SLEDR+VK R G ++ ++P A P A+ Sbjct: 266 ALASLRVGGRLVVESYQSLEDRIVKNVL--RGGSTVSAPPGLPVVPDEARPRLALLTRGA 323 Query: 290 KKVVVPTQEDVAFNRRSRSAKLR 312 + QE N RS S +LR Sbjct: 324 GRAPASEQEK---NPRSASVRLR 343 >gi|315186407|gb|EFU20167.1| S-adenosyl-methyltransferase MraW [Spirochaeta thermophila DSM 6578] Length = 324 Score = 188 bits (478), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 117/300 (39%), Positives = 172/300 (57%), Gaps = 9/300 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77 HVPVL E+V A L+ G +++DAT G GG+S + + G ++ +D DP +S E Sbjct: 8 HVPVLREEVGAFLSVRDG-LVVDATLGEGGHSEALLESHPGIRLLGVDADPIMLSRAGER 66 Query: 78 MRDYKEQFSLFQATFSQLQDYVP--DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + + ++ L Q F ++ + P D+ V G++ DLG+SS ++ RGFSF + PLDM Sbjct: 67 LSRFGDRVRLVQGWFDEVLESFPAEDRPV-GILMDLGISSYHLEKSGRGFSFLRREPLDM 125 Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 R+S + ASDVVN + +L + GEE + RIA AIV R+ P T+ L+ + Sbjct: 126 RLSPYLPMKASDVVNTYSETELVDVFSRFGEEPFSRRIARAIVSERRKMPITTSDHLAEV 185 Query: 195 IQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 + K V ++ RIHPATR FQALRI VN E+E + + +R+ + L GG + V+SFHSL Sbjct: 186 VMKAVPPKARRGRIHPATRVFQALRIVVNKELERVERAVRAGVRLLAPGGRMAVISFHSL 245 Query: 254 EDRLVKKFFA-SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 EDR+VK+ F S I + + +TKK V P +E+V N SRSA+LR Sbjct: 246 EDRIVKRLFRFYASACTCPPEEPICRCGGQGIVEVLTKKPVRPGEEEVRTNPASRSARLR 305 >gi|71735888|ref|YP_276238.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv. phaseolicola 1448A] gi|88909210|sp|Q48EF0|RSMH_PSE14 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|71556441|gb|AAZ35652.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv. phaseolicola 1448A] gi|320322458|gb|EFW78551.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv. glycinea str. B076] gi|320330073|gb|EFW86060.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv. glycinea str. race 4] gi|330875017|gb|EGH09166.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv. glycinea str. race 4] Length = 313 Score = 188 bits (478), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 117/305 (38%), Positives = 177/305 (58%), Gaps = 16/305 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H+ VLLE+ + L LD TFG GG+SR ++G + ++ D+DP A++ GQ Sbjct: 7 HITVLLEEAVEALEVRADGCYLDGTFGRGGHSRLILSQLGPDGRLLGFDKDPQAIATGQ- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F + Q +F++L ++G V G++ DLGVSS Q+D +RGFSF GP Sbjct: 66 ALAAEDGRFVIVQRSFAELGSEAQERGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDGP 125 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G+SA++ + A +++ R+ GEE+ A R+A+A+V RR+ PF+ T DL Sbjct: 126 LDMRMDPTRGVSAAEFIATAPAEEIARVFKEYGEERFAKRMANAVVARREVQPFERTADL 185 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ K + +PATR+FQ LRI VNNE+ +L GL +A AL+ GG L+V+SFH Sbjct: 186 AEVL-KVANPAWEKGKNPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLVVISFH 244 Query: 252 SLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQ---SITKKVVVPTQEDVAFNRRSR 307 SLEDR+VK F + G+ + +P P F+ I K + + N RSR Sbjct: 245 SLEDRIVKLFMRKLAKGEADNMPRNLPIQFKP--FEPKIKIHGKAQFASDTETKANPRSR 302 Query: 308 SAKLR 312 SA +R Sbjct: 303 SAVMR 307 >gi|89099599|ref|ZP_01172474.1| S-adenosyl-methyltransferase MraW [Bacillus sp. NRRL B-14911] gi|89085752|gb|EAR64878.1| S-adenosyl-methyltransferase MraW [Bacillus sp. NRRL B-14911] Length = 310 Score = 188 bits (478), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 117/308 (37%), Positives = 175/308 (56%), Gaps = 11/308 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 DH VLLE+ +A L+ P V +D T G G+S S+ + A D+D A+ Q Sbjct: 3 DHKTVLLEETVAGLDIKPDGVYVDCTMGGAGHSELILTQLSSRGKLYAFDQDETAIENAQ 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + Y ++ ++ ++ F L++ + GV DGV++DLGVSS Q+D +RGFS+ P Sbjct: 63 EKLSKYGDKITIIKSNFLHLKEELEKAGVTEVDGVLYDLGVSSPQLDTPERGFSYHHDAP 122 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + +SA +VVN +DL RI GEEK + +IA I R+ AP +TT L Sbjct: 123 LDMRMDKDASLSAYEVVNDWPYEDLVRIFFRYGEEKFSKQIARKIEAAREKAPIETTSQL 182 Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 LI+ + ++ HPA R FQA+RI VN+E+ + L A LK GG + V++F Sbjct: 183 VELIKDGIPAPARRKGGHPAKRVFQAIRIAVNDELGVFEKSLEQAIDILKPGGRISVITF 242 Query: 251 HSLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 HSLEDR+ K F AS + + +IP P V + + +K ++P++E++ N R+RS Sbjct: 243 HSLEDRICKATFKKASETPPLPPGLPIIPDEFKP-VLKLVARKPILPSEEELEENNRARS 301 Query: 309 AKLRAGMR 316 AKLR + Sbjct: 302 AKLRVAEK 309 >gi|291514761|emb|CBK63971.1| S-adenosyl-methyltransferase MraW [Alistipes shahii WAL 8301] Length = 300 Score = 188 bits (478), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 124/307 (40%), Positives = 166/307 (54%), Gaps = 22/307 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H PVLLE+ + LL P D TFG GG+SR I D P G + R Sbjct: 5 HTPVLLEESVGLLAVEPAGTYADLTFGGGGHSRR--------ILSDLGPEGRLYGFDQDR 56 Query: 80 DYKE------QFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130 D E +F ++ F L+ + +GV DG++ DLGVSS D +RGFSF+ Sbjct: 57 DTLENRPDDARFHYVESNFRFLRGALRLRGVTEVDGILADLGVSSHHFDAVERGFSFRGE 116 Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM+ G ++A+DVVN +DLTRILG GE + ++A+ +VK R +AP TT Sbjct: 117 APLDMRMNQRGRLTAADVVNDYTAEDLTRILGDWGEVETPWKVANCLVKARAAAPVTTTA 176 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L ++ K + T+ FQALRI VN E+E L L + + LK GG L+V+S Sbjct: 177 QLVGAVKPCT--PKKDEAKFLTKLFQALRIEVNGEMEALKMALEQSLRVLKPGGRLVVIS 234 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 +HSLEDRLVK F RSG A F +T+K V P+ E++ N RSRSA Sbjct: 235 YHSLEDRLVKNFM--RSGNFSGQVEKDFFGRSQAPFDLVTRKAVTPSAEELDRNPRSRSA 292 Query: 310 KLRAGMR 316 KLRA ++ Sbjct: 293 KLRAAVK 299 >gi|194468375|ref|ZP_03074361.1| S-adenosyl-methyltransferase MraW [Lactobacillus reuteri 100-23] gi|194453228|gb|EDX42126.1| S-adenosyl-methyltransferase MraW [Lactobacillus reuteri 100-23] Length = 318 Score = 188 bits (478), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 121/306 (39%), Positives = 180/306 (58%), Gaps = 15/306 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77 HV VLL++ +A LN P +DAT G GG++++ + + ++ + D+D A+ +E Sbjct: 6 HVTVLLKEAVAGLNVQPTGTYVDATLGGGGHTQAILQQLVDGHLYSFDQDQTAIDYNKEH 65 Query: 78 MRDYKEQFSL------FQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++ EQ L F+ ++L Y K V+G+++DLGVSS Q D RGFS+Q Sbjct: 66 LKTAIEQQKLTLVEDNFRNIKTELNSYNV-KRVNGILYDLGVSSPQFDDAKRGFSYQHDA 124 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ +SA +VVN+ + L +IL GEEK A IA I +RR+ AP +TT + Sbjct: 125 PLDMRMNQEQKLSAMEVVNEWPYERLVKILYRYGEEKFAKSIARKIEQRRKIAPIKTTFE 184 Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I++ + ++ + HPA +SFQA+RI VN+E+ L + L A L GG + V++ Sbjct: 185 LVDVIKEGIPAAARRHGGHPAKKSFQAIRIAVNDELGALEESLEQALDLLDVGGRISVIT 244 Query: 250 FHSLEDRLVKKFF---ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 F SLEDRLVK F S SG V +IP+ P F+ I KK +V + E++A N R+ Sbjct: 245 FQSLEDRLVKTMFREKTSLSGDVPQGLPVIPAGMEPD-FKLINKKPIVASDEELAANHRA 303 Query: 307 RSAKLR 312 SAKLR Sbjct: 304 HSAKLR 309 >gi|189501435|ref|YP_001960905.1| S-adenosyl-methyltransferase MraW [Chlorobium phaeobacteroides BS1] gi|263445802|sp|B3EQC6|RSMH_CHLPB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|189496876|gb|ACE05424.1| S-adenosyl-methyltransferase MraW [Chlorobium phaeobacteroides BS1] Length = 332 Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 117/326 (35%), Positives = 187/326 (57%), Gaps = 33/326 (10%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--------GSNVIALDRDPFAV 71 H+PV++ +V+A L G + +D T G GG+S + + GS +I +D+D FA+ Sbjct: 7 HLPVMVREVVAWLVRRAG-IYVDGTLGGGGHSLAILRALRDKGLEKGSFLIGIDQDSFAI 65 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPD------KGVD--GVVFDLGVSSMQIDCGDR 123 + + T+ ++E+ L Q F ++ D V +G++ G++ DLGVSS QID +R Sbjct: 66 AEAERTLASFRERTRLVQGNFREIADIVSTLRENQLRGMEVAGILLDLGVSSFQIDTSER 125 Query: 124 GFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK-RRQ 181 GFS+ +SGPLDMRM G SA+D+VN ++L I GEEK++ RIA AI R + Sbjct: 126 GFSYLRSGPLDMRMEPDEGQSAADIVNTFEERELADIFFRFGEEKKSRRIASAICSWRNE 185 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 + TQDL+++++ V + +I +R FQALRI VN+E+ L L+ +L Sbjct: 186 RGVIRGTQDLAAIVRSVVSVP-DQQIKSLSRIFQALRIAVNDELGALESALKEGAASLSP 244 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSG-----KVMAVRHMIPSNAHPAVFQSITKKVVVPT 296 G + V+S+HS+EDR+VK +F + + K +A+R + H A F +T+K ++ Sbjct: 245 QGRMAVMSYHSIEDRMVKHYFRTLAADDWGPKGVALREPL----HKAAFTLVTRKALIAG 300 Query: 297 QEDVAFNRRSRSAKLRAGMRTVERSI 322 ++V N R+RSAK MR +ER + Sbjct: 301 DDEVNENSRARSAK----MRVIERKM 322 >gi|182626151|ref|ZP_02953911.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens D str. JGS1721] gi|177908588|gb|EDT71113.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens D str. JGS1721] Length = 310 Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 118/308 (38%), Positives = 176/308 (57%), Gaps = 22/308 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 HV VLL++ I LN + +D T G G+S K S+ +I D+D A+ E Sbjct: 5 HVSVLLDECINALNIKEDGIYVDCTLGGAGHSSEIVKRLSSDGRLIGFDQDKDALKAAGE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++DYK + + F + D + D GVDG++ DLGVSS Q+D G+RGFS+ + PL Sbjct: 65 RLKDYK-NVTYVHSNFYAIYDVLTDLGIDGVDGILMDLGVSSYQLDNGERGFSYMQDAPL 123 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ SA ++VN + ++L RI+ GEEK A RIA IVK R+ ++T +L Sbjct: 124 DMRMNRENEFSAYEIVNTYSEEELYRIIKEYGEEKFAKRIASFIVKNREEKNIESTLELV 183 Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + ++ HPA R+FQA+RI VN E+E +++ + K L GG + +++FH Sbjct: 184 EIIKAAIPAKARREGPHPAKRTFQAIRIEVNKELEIISKTILDGVKKLNKGGRMAIITFH 243 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPS-------NAHPAVFQSITKKVVVPTQEDVAFNR 304 SLEDR+VK F K +A PS N P V + I++K + ++E++ FN Sbjct: 244 SLEDRIVKNTF-----KELANPCTCPSEFPVCVCNRKPEV-KLISRKPIEASKEELEFNP 297 Query: 305 RSRSAKLR 312 RSRSAKLR Sbjct: 298 RSRSAKLR 305 >gi|328957120|ref|YP_004374506.1| S-adenosyl-methyltransferase MraW [Carnobacterium sp. 17-4] gi|328673444|gb|AEB29490.1| S-adenosyl-methyltransferase MraW [Carnobacterium sp. 17-4] Length = 318 Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 113/306 (36%), Positives = 175/306 (57%), Gaps = 13/306 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 +H VLL + + L+ +P + +D T G G+S ++ A D+D A+ + Sbjct: 5 NHETVLLRETVDGLSLSPEGIYVDCTLGGAGHSEYLLSQLDENGHLFAFDQDERAIENAK 64 Query: 76 ETMRDYKEQ--FSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + +Y E+ + +A F +++ + ++G VDG+++DLGVSS Q+D +RGFS+ + Sbjct: 65 VRLAEYVEKGMVTFIKANFRNIKEELTERGINEVDGILYDLGVSSPQLDEAERGFSYHQD 124 Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM ++A DVVN+ + DL RI GEEK + +IA I R+ P +TT Sbjct: 125 APLDMRMDTDAPLTAKDVVNEWSYHDLIRIFYRYGEEKFSKQIARKIEAAREIKPIETTS 184 Query: 190 DLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L LI+ + ++ HPA R FQA+RI VN+E+ + L A + L GG + V+ Sbjct: 185 ELVELIKSGIPAPARRKGGHPAKRVFQAIRIAVNDELSSVEDSLEQAIELLAIGGRISVI 244 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 SFHSLEDR+VK F S R + IP P + + IT+K ++P++E++A N RS Sbjct: 245 SFHSLEDRIVKTIFKDHSKGPELPRGLPVIPDGFLPEL-KLITRKPILPSEEELAVNNRS 303 Query: 307 RSAKLR 312 RSAKLR Sbjct: 304 RSAKLR 309 >gi|66047337|ref|YP_237178.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv. syringae B728a] gi|75500766|sp|Q4ZNY2|RSMH_PSEU2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|63258044|gb|AAY39140.1| methyltransferase [Pseudomonas syringae pv. syringae B728a] Length = 313 Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 118/305 (38%), Positives = 176/305 (57%), Gaps = 16/305 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H+ VLLE+ + L LD TFG GG+SR ++G + ++ D+DP A++ GQ Sbjct: 7 HITVLLEEAVEALAVRADGCYLDGTFGRGGHSRLILSQLGPDGRLLGFDKDPQAIATGQ- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F + Q +F++L ++G V G++ DLGVSS Q+D +RGFSF GP Sbjct: 66 ALAAEDGRFVIVQRSFAELGSETQERGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDGP 125 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM GISA++ + A +++ R+ GEE+ A R+A+A+V RR+ PF+ T DL Sbjct: 126 LDMRMDPARGISAAEFIATAPAEEIARVFKEYGEERFAKRMANAVVARREVQPFERTADL 185 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ K + +PATR+FQ LRI VNNE+ +L GL +A AL+ GG L+V+SFH Sbjct: 186 AEVL-KVANPAWEKGKNPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLVVISFH 244 Query: 252 SLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQ---SITKKVVVPTQEDVAFNRRSR 307 SLEDR+VK F + G+ + +P P F+ I K + + N RSR Sbjct: 245 SLEDRIVKLFMRKLAKGEADNMPRNLPIQFKP--FEPKIKIHGKAQFASDAETKANPRSR 302 Query: 308 SAKLR 312 SA +R Sbjct: 303 SAVMR 307 >gi|329944591|ref|ZP_08292731.1| S-adenosyl-methyltransferase MraW [Actinomyces sp. oral taxon 170 str. F0386] gi|328530144|gb|EGF57027.1| S-adenosyl-methyltransferase MraW [Actinomyces sp. oral taxon 170 str. F0386] Length = 368 Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 121/327 (37%), Positives = 181/327 (55%), Gaps = 32/327 (9%) Query: 18 GDHVPVLLEKVIALLNPA-------------PGKVILDATFGAGGYSRSFCKMGS--NVI 62 G H PVLL++ + LL PA G V++D T G GG++ + + V+ Sbjct: 13 GRHEPVLLQRCLDLLAPAIERAAEDTSRGSAAGPVMIDCTLGMGGHTEAALERFPYLTVV 72 Query: 63 ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV------DGVVFDLGVSSM 116 +DRDP A++ + + ++F QAT+ + D V D V+ DLGVSS+ Sbjct: 73 GIDRDPEAITLASARLERFGDRFVAVQATYDAVDRVARDHSVSAEGTVDAVLMDLGVSSL 132 Query: 117 QIDCGDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175 Q+D RGFS+ + PLDMRM SG +A D++ A+ +LTRIL GEE+ ASRIA A Sbjct: 133 QLDEASRGFSYARPAPLDMRMDQSSGPTAQDLLESADSAELTRILRTYGEERFASRIATA 192 Query: 176 IVKRRQSA-PFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLR 233 IV+RR++ P +TQDL+ L+++ V ++ + HPA R+FQALRI VN E++ L + + Sbjct: 193 IVRRREAGEPASSTQDLAELVRQAVPAPARRSGGHPAKRTFQALRIAVNAELDVLERAVP 252 Query: 234 SAEKALKAGGLLIVVSFHSLEDRLVKKFF----ASRSGKVMAVRHMIPSNAHPAVFQSIT 289 A +L+ GG L+V S+ SLEDR+VK+ SR+ + + V +P P + IT Sbjct: 253 RALNSLRVGGRLVVESYQSLEDRIVKRALNHGATSRAPQGLPV---VPEADRP-YLELIT 308 Query: 290 KKVVVPTQEDVAFNRRSRSAKLRAGMR 316 ++ N RS +LRA R Sbjct: 309 SGAEKADARELEHNPRSAPVRLRAVAR 335 >gi|138894646|ref|YP_001125099.1| S-adenosyl-methyltransferase MraW [Geobacillus thermodenitrificans NG80-2] gi|196247745|ref|ZP_03146447.1| S-adenosyl-methyltransferase MraW [Geobacillus sp. G11MC16] gi|263455979|sp|A4IM00|RSMH_GEOTN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|134266159|gb|ABO66354.1| S-adenosyl-methyltransferase MraW [Geobacillus thermodenitrificans NG80-2] gi|196212529|gb|EDY07286.1| S-adenosyl-methyltransferase MraW [Geobacillus sp. G11MC16] Length = 310 Score = 188 bits (477), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 119/303 (39%), Positives = 175/303 (57%), Gaps = 11/303 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H VLL++ + LN P V +D T G GG+S S + A D+D A+ E Sbjct: 4 HTTVLLKEAVDGLNVRPDGVYVDCTLGGGGHSEYLLSRLSKRGKLFAFDQDETAILHASE 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + Y+EQ F LQ+ + G VDG++FDLGVSS Q+D +RGFS+Q PL Sbjct: 64 RLARYREQVQFINRNFRFLQEELSALGIHAVDGILFDLGVSSPQLDEPERGFSYQHDAPL 123 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM ++A+++VN+ ++L RI GEEK + ++A I + R+ P +TT +L Sbjct: 124 DMRMDRKQRLTAAEIVNRWPYEELVRIFFRYGEEKFSKQVARKIEEVRRKRPIETTGELV 183 Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + ++ + HPA R FQALRI VN+E+E + L A + L GG + V++FH Sbjct: 184 EVIKAAIPAPARRSGGHPAKRIFQALRIAVNDELEAFREALEQAIELLAPGGRVSVITFH 243 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+ K+ F AS S + ++P + P V + ITKK VVP+ E++ N R+RSA Sbjct: 244 SLEDRICKETFKKASESPPLPPGLPVLPDDYRP-VLKIITKKPVVPSAEELERNNRARSA 302 Query: 310 KLR 312 KLR Sbjct: 303 KLR 305 >gi|320106390|ref|YP_004181980.1| S-adenosyl-methyltransferase MraW [Terriglobus saanensis SP1PR4] gi|319924911|gb|ADV81986.1| S-adenosyl-methyltransferase MraW [Terriglobus saanensis SP1PR4] Length = 319 Score = 188 bits (477), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 131/326 (40%), Positives = 182/326 (55%), Gaps = 33/326 (10%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HVPVL ++V+ LN G DAT G GG+S ++ +I DRDP A++ + Sbjct: 6 HVPVLYDEVLNFLNVRAGGTYADATLGLGGHSSGIARLLGAKGTLICFDRDPEAMTKAKA 65 Query: 77 -------TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 + D FS+ +D + +DG++ D GVSS+Q+D RGFSF+ Sbjct: 66 RFEALAVELGDTMPTVRFEPRAFSEAKDVIKPGSLDGLLADFGVSSLQLDEAHRGFSFRF 125 Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM SG +A VVNQA+ ++L ++ GEE+++ RIA AIV+ R P +TT Sbjct: 126 EGPLDMRMDTRSGETAEQVVNQADEEELANLIYEFGEERRSRRIARAIVRAR---PIRTT 182 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ +I K+++IHPATR+FQALRI VN+E+ E+ L SA LK GG L V+ Sbjct: 183 AELAKVISVAAPSMKSDKIHPATRTFQALRIRVNDELGEIRTLLESAPSLLKVGGRLAVI 242 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDRLVK A+R G A ++ I KK + ++++ N RSRS Sbjct: 243 SFHSLEDRLVKD--ATRDG------------ARDGIWNLIEKKPITAGEDEIQRNPRSRS 288 Query: 309 AKLRAGMRTVERSIEDDSFVHLPRLP 334 AKLR R I D FV +LP Sbjct: 289 AKLRVAER-----IADTGFVVKRKLP 309 >gi|164686379|ref|ZP_02210409.1| hypothetical protein CLOBAR_02817 [Clostridium bartlettii DSM 16795] gi|164601981|gb|EDQ95446.1| hypothetical protein CLOBAR_02817 [Clostridium bartlettii DSM 16795] Length = 311 Score = 188 bits (477), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 116/309 (37%), Positives = 172/309 (55%), Gaps = 13/309 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 +HV VLL++ I LN V +D T G G+S+ K S I D+D A++ + Sbjct: 4 NHVSVLLDECIDNLNIKEDGVYVDCTMGGAGHSKEIVKRLSKDGLFIGFDQDKNAIATAK 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + +Y ++ + FS +++ + GV DGV+ DLGVSS Q+D DRGFS+ P Sbjct: 64 ERLAEYSDRVRFVHSNFSNIKEELEKIGVYKIDGVLADLGVSSHQLDEADRGFSYMHDAP 123 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM SA DVVN + L +I+ GE+ A RIA IV+ R+ P + T +L Sbjct: 124 LDMRMDIRKPFSAYDVVNTYTEEQLAKIIKDYGEDNWAKRIAKFIVETREEKPIEKTGEL 183 Query: 192 SSLIQKTVYFSKNNRI---HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +I+K + K RI HPA R+FQA+RI VNNE+ + + + A + GG + ++ Sbjct: 184 VDIIKKAI--PKKARIDGPHPAKRTFQAIRIEVNNELGVINKMIDDAVSMMNKGGRICII 241 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+VK F S + + I + + IT+K ++P++E+V N RSR Sbjct: 242 TFHSLEDRIVKNEFKELSLSCVCPPELPICRCDKVSEVKVITRKPILPSKEEVEANPRSR 301 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 302 SAKLRVAEK 310 >gi|329924124|ref|ZP_08279357.1| S-adenosyl-methyltransferase MraW [Paenibacillus sp. HGF5] gi|328940856|gb|EGG37166.1| S-adenosyl-methyltransferase MraW [Paenibacillus sp. HGF5] Length = 317 Score = 188 bits (477), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 112/309 (36%), Positives = 173/309 (55%), Gaps = 16/309 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+ VL ++ L P + +D T G G+S S+ +IALD+D +A++ +E Sbjct: 4 HITVLKQEATEGLRIKPDGIYVDCTLGGAGHSSLIASQLSSEGRLIALDQDDWALNNARE 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK---------GVDGVVFDLGVSSMQIDCGDRGFSF 127 M+ Y ++ +L + F L++ + + VDG++FDLGVSS Q D G+RGFS+ Sbjct: 64 AMKPYADRITLVKTNFRDLEEVLRSEVGAGENGQPQVDGILFDLGVSSPQFDEGERGFSY 123 Query: 128 QKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 PLDMRM S ++A+ +VN+ +++ RIL GEEK + RIA IV+RR +P Q Sbjct: 124 NHDAPLDMRMDQSAELTAAKIVNEWPEQEIARILYQYGEEKFSRRIAKVIVERRAQSPIQ 183 Query: 187 TTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT +L +I++ + ++ HPA RSFQA RI VN+E+ L A + L GG + Sbjct: 184 TTGELVEMIKEGIPAAARRTGGHPAKRSFQAFRIAVNDELGAFEDALHQAVRCLAPGGRV 243 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 V++FHSLEDR+ K+ F S K M + + +K ++P+ E++ N Sbjct: 244 SVITFHSLEDRICKQIFNSYIPKCTCPPDFPMCVCGGGQGDLKLVNRKPLIPSAEEIESN 303 Query: 304 RRSRSAKLR 312 R+RSAKLR Sbjct: 304 PRARSAKLR 312 >gi|110833451|ref|YP_692310.1| methyltransferase [Alcanivorax borkumensis SK2] gi|123345754|sp|Q0VS10|RSMH_ALCBS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|110646562|emb|CAL16038.1| methyltransferase [Alcanivorax borkumensis SK2] Length = 312 Score = 188 bits (477), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 116/300 (38%), Positives = 173/300 (57%), Gaps = 10/300 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQE 76 H PV+LE+V+ + +D TFG GG+SR+ ++G N +I +DRDP A++ GQ+ Sbjct: 10 HQPVMLEEVLDMWFSQSEGFYVDGTFGRGGHSRALLSRLGENGRLIGIDRDPQAIAAGQQ 69 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + +F + F L V G +DG++ DLGVSS Q+D RGFSF + GPLD Sbjct: 70 -LAASDSRFHMMAGRFDCLPQAVEQAGRPIDGLLLDLGVSSPQLDDAARGFSFLRDGPLD 128 Query: 135 MRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM G S ++ ++ A KD+ +L GEE+++ IA I + R+ P T L+ Sbjct: 129 MRMDPTQGESVAEWLSYAAEKDIANVLYRYGEERKSRWIAKRICETRKEQPITRTLQLAD 188 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 LI+ + ++ + HPATRSFQALRI +N E++ L Q L + + L GG L ++SFHSL Sbjct: 189 LIESVLGRNEQGK-HPATRSFQALRIHINGELDALDQVLEQSLETLAIGGRLAIISFHSL 247 Query: 254 EDRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 EDR+VK F SG+ R +P + P + + KV+ ++ ++ N RSRSA LR Sbjct: 248 EDRIVKLFIRDHSGRAPKGRGGLPLGDELPQRLEPVG-KVMRASKAELKVNVRSRSAVLR 306 >gi|254449029|ref|ZP_05062483.1| S-adenosyl-methyltransferase MraW [gamma proteobacterium HTCC5015] gi|198261423|gb|EDY85714.1| S-adenosyl-methyltransferase MraW [gamma proteobacterium HTCC5015] Length = 309 Score = 188 bits (477), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 124/306 (40%), Positives = 170/306 (55%), Gaps = 12/306 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMG--SNVIALDRDPFAVSCGQ 75 +HVPVLL + I L V LD TFG GG+S + ++G + A+DRD AV Q Sbjct: 6 EHVPVLLAEAIEGLRIEENGVYLDGTFGRGGHSAAILSQLGVDGQLHAIDRDRAAVDVAQ 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGV----DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + +FS+ FSQL Y +G+ +GV+ D+GVSS QID RGFSFQ G Sbjct: 66 QRFAE-DARFSIHHGEFSQLDQYCEQRGLAGRLNGVLLDIGVSSPQIDDPGRGFSFQFDG 124 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + G +A+ + A ++ R+L GEE+ A RIA AI + Q +TTQ Sbjct: 125 PLDMRMDQTRGETAAQWLVSAEASEIARVLKEFGEERNAKRIASAIKRTLQERSIETTQG 184 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L ++I+ ++ HPATRSFQALRI VN+E+ L + L +A + L GG L V+SF Sbjct: 185 LVAVIESATRVRDRHK-HPATRSFQALRIQVNDEMGALRRALDAAVRMLAPGGRLAVISF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDR+VK+F S R + P +S+ K + E + N R+RSA Sbjct: 244 HSLEDRMVKRFIRDESTPREVARGL-PQKTDHIRLKSVGKAIKAGESE-LKKNPRARSAV 301 Query: 311 LRAGMR 316 LR R Sbjct: 302 LRVAER 307 >gi|325578829|ref|ZP_08148876.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Haemophilus parainfluenzae ATCC 33392] gi|325159653|gb|EGC71785.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Haemophilus parainfluenzae ATCC 33392] Length = 322 Score = 188 bits (477), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 125/314 (39%), Positives = 175/314 (55%), Gaps = 20/314 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQ 75 +H+ VLL + + L + +D TFG GG+SR S +IA+DRDP A++ Sbjct: 11 EHITVLLHEAVNGLALKENGIYIDGTFGRGGHSRLILSQLSENGRLIAVDRDPRAIAEA- 69 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E ++D + F + +FS + D +DG++ DLGVSS Q+D DRGFSF K G Sbjct: 70 EKIQDPR--FHIEHNSFSHIPDICQKLDLVGKIDGILLDLGVSSPQLDEADRGFSFMKDG 127 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP------ 184 PLDMRM + G+SA++ + Q +V DLT +L GEE+ A RIA AIV+ + A Sbjct: 128 PLDMRMDTTQGLSAAEWLKQVSVDDLTWVLKTFGEERFAKRIATAIVEFNKRAIKNGTEC 187 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 T L+ LI + V F K+ HPATRSFQA+RI++N E++EL L SA L G Sbjct: 188 LSRTSQLAELIAQAVPF-KDKHKHPATRSFQAIRIYINAELDELESVLNSALDMLAPEGR 246 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ--SITKKVVVPTQEDVAF 302 L ++SFHSLEDR+VK F +S R + Q I K + P++ +++ Sbjct: 247 LSIISFHSLEDRMVKHFMRKQSKGDDIPRGLPLREDQIQRNQKLKIIGKAIQPSEAEISA 306 Query: 303 NRRSRSAKLRAGMR 316 N RSRSA LR R Sbjct: 307 NPRSRSAVLRIAER 320 >gi|49478448|ref|YP_037980.1| S-adenosyl-methyltransferase MraW [Bacillus thuringiensis serovar konkukian str. 97-27] gi|54036189|sp|Q6HEP6|RSMH_BACHK RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|49330004|gb|AAT60650.1| S-adenosyl-methyltransferase [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 310 Score = 188 bits (477), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 114/304 (37%), Positives = 175/304 (57%), Gaps = 11/304 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 +HV VLL++ + L+ P +D T G GG+S G +IA D+D A+ + Sbjct: 3 NHVTVLLKETVDGLDIKPDGTYVDCTLGGGGHSSYLLSQLTEGGRLIAFDQDEIAIQNAK 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E Y EQF ++ F L + + + G VDG++FDLGVSS Q+D +RGFS+ P Sbjct: 63 EKFSSYGEQFITVKSNFRYLSEKLQELGITEVDGILFDLGVSSPQLDTPERGFSYHHDAP 122 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + ++A DVVN + + L RI GEEK + +IA I R++ +TT +L Sbjct: 123 LDMRMDQDASLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTGEL 182 Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 LI++ + ++ HPA R FQA+RI VN+E++ + L SA + +K GG + V++F Sbjct: 183 VELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRVSVITF 242 Query: 251 HSLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 HSLEDR+ K F S + ++ +IP P + + IT+K ++P+ ++ N R+RS Sbjct: 243 HSLEDRICKTTFKRNSTTPQLPPGLPIIPDEFKPKL-KLITRKPILPSDIELEENNRARS 301 Query: 309 AKLR 312 AKLR Sbjct: 302 AKLR 305 >gi|116873471|ref|YP_850252.1| S-adenosyl-methyltransferase MraW [Listeria welshimeri serovar 6b str. SLCC5334] gi|123461323|sp|A0AKE1|RSMH_LISW6 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|116742349|emb|CAK21473.1| S-adenosyl-methyltransferase [Listeria welshimeri serovar 6b str. SLCC5334] Length = 312 Score = 188 bits (477), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 109/303 (35%), Positives = 177/303 (58%), Gaps = 11/303 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGS--NVIALDRDPFAVSCGQE 76 H VLL + + +L P + +DAT G G+S K+ ++ A D+D A+ + Sbjct: 4 HETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEQGHLFAFDQDQTAIDNAKM 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + DY ++ + +A F +++ + ++G VDG+++DLGVSS Q+D +RGFS+ + L Sbjct: 64 KLADYSDKVTFIKANFRYMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQDAAL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM ++A VVN+ + +DL RI GEEK + +IA I +RR+ P +TT +L Sbjct: 124 DMRMDQEQELTAKIVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTGELV 183 Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + ++ HP R+FQA+RI VN+E+ + L A LK GG + V++FH Sbjct: 184 DIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLLKPGGRISVITFH 243 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+ K F A++ ++ +IP P F+ T+K +VP++E++ N R+RSA Sbjct: 244 SLEDRITKHLFQEATKGPELPPGLPVIPDEYKPD-FKLATRKPIVPSEEELEQNNRARSA 302 Query: 310 KLR 312 KLR Sbjct: 303 KLR 305 >gi|145639350|ref|ZP_01794956.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae PittII] gi|145271653|gb|EDK11564.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae PittII] gi|309751224|gb|ADO81208.1| 16S rRNA m(4)C1402 methyltranserfase [Haemophilus influenzae R2866] Length = 321 Score = 188 bits (477), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 127/318 (39%), Positives = 180/318 (56%), Gaps = 30/318 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQE 76 H+ VLL + + L + +D TFG GG+SR ++ SN +IA+DRDP A++ E Sbjct: 12 HITVLLHEAVNGLALKENGIYIDGTFGRGGHSRFILSQLSSNGRLIAVDRDPRAIA---E 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +F + +FS + + + DK ++G++ DLGVSS Q+D +RGFSF K G Sbjct: 69 AHKIQDSRFQIEHNSFSHIPE-ICDKLNLVGKINGILLDLGVSSPQLDEAERGFSFMKDG 127 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP------ 184 PLDMRM + G+SA + + Q +++DLT +L GEE+ A RIA AIV +SA Sbjct: 128 PLDMRMDTTQGLSAEEWLKQVSIEDLTWVLKTFGEERFAKRIATAIVDFNKSAVKNGTEF 187 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 T L+ LI + V F K+ HPATRSFQA+RIF+N+E++EL L SA L G Sbjct: 188 LSRTSQLAELISQAVPF-KDKHKHPATRSFQAIRIFINSELDELESLLNSALDMLAPEGR 246 Query: 245 LIVVSFHSLEDRLVKKFFASRSG-----KVMAVRH-MIPSNAHPAVFQSITKKVVVPTQE 298 L ++SFHSLEDR+VK F +S K + +R I N I K + P+ Sbjct: 247 LSIISFHSLEDRMVKHFMKKQSKGEDIPKGLPLREDQIQRNQK----LRIIGKAIQPSDA 302 Query: 299 DVAFNRRSRSAKLRAGMR 316 ++ N RSRSA LR R Sbjct: 303 EIQANPRSRSAILRVAER 320 >gi|302386836|ref|YP_003822658.1| S-adenosyl-methyltransferase MraW [Clostridium saccharolyticum WM1] gi|302197464|gb|ADL05035.1| S-adenosyl-methyltransferase MraW [Clostridium saccharolyticum WM1] Length = 312 Score = 188 bits (477), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 112/313 (35%), Positives = 184/313 (58%), Gaps = 28/313 (8%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGS--NVIALDRDPFAVSCGQ 75 +H VLL + I LN P + +D T G GG++ CK +G+ +I +D+D A+ Sbjct: 4 EHKSVLLYETIDSLNVKPDGIYVDGTLGGGGHALEVCKRLGTYGRLIGIDQDGDAIKAAA 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS-G 131 E ++DY+++ ++ ++ + +Q + D G VDG+ DLGVSS Q+D +RGF++++ Sbjct: 64 ERLKDYEDKVTVVRSNYENIQTVLKDLGIEKVDGIYLDLGVSSYQLDKPERGFTYREDDA 123 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + +A+D++N + DL RI+ GE+K A IA IV+ RQ P +TT + Sbjct: 124 PLDMRMDQRNEQTAADIINSYSEFDLYRIIRDYGEDKFAKNIAKHIVRARQGKPIETTGE 183 Query: 191 LSSLIQKTVYFSKNNRI-----HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 L+ +I++ + R+ HP+ R+FQA+RI +N E+E L + L + L GG L Sbjct: 184 LTEIIKEAI----PARVRAVGGHPSKRTFQAIRIELNKELEVLNKSLDTMIDLLNPGGRL 239 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF------QSITKKVVVPTQED 299 +++FHSLEDR+VK F + + PS+ V + IT+K +VP++E+ Sbjct: 240 SIITFHSLEDRMVKTRFRTNENPCIC-----PSDFPVCVCGRKSKGKVITRKPIVPSEEE 294 Query: 300 VAFNRRSRSAKLR 312 + N+RS+S+KLR Sbjct: 295 IEENKRSKSSKLR 307 >gi|330964049|gb|EGH64309.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv. actinidiae str. M302091] Length = 313 Score = 188 bits (477), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 118/307 (38%), Positives = 178/307 (57%), Gaps = 20/307 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76 H+ VLLE+ + L P LD TFG GG+SR S ++ D+DP A++ GQ Sbjct: 7 HITVLLEEAVEALAVRPDGCYLDGTFGRGGHSRLILSHLGPDGRLLGFDKDPQAIATGQ- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F + Q +F++L + G V G++ DLGVSS Q+D +RGFSF GP Sbjct: 66 ALAAEDGRFVIVQRSFAELGSQAQELGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDGP 125 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G+SA++ + A +++ R+ GEE+ A R+A+A+V+RR+ PF+ T DL Sbjct: 126 LDMRMDPTRGVSAAEFIASAPAEEIARVFKEYGEERFAKRMANAVVQRREIQPFERTADL 185 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ K + +PATR+FQ LRI VNNE+ +L GL +A ++L+ GG L+V+SFH Sbjct: 186 AEVL-KVANPAWEKGKNPATRAFQGLRIHVNNELGDLEAGLEAAMESLEIGGRLVVISFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA------FNRR 305 SLEDR+V K F + K A +P N P +++ K+ + + A N R Sbjct: 245 SLEDRIV-KLFMRKLAKGEA--DNMPRNL-PIQYKAFEPKIKIHGKAQFASDVETKANPR 300 Query: 306 SRSAKLR 312 SRSA +R Sbjct: 301 SRSAVMR 307 >gi|261839470|gb|ACX99235.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori 52] Length = 302 Score = 188 bits (477), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 119/302 (39%), Positives = 177/302 (58%), Gaps = 16/302 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVSCGQET 77 H VLL++V+ P V++D T G GG+S++ K +I +D+D FA +E Sbjct: 2 HQSVLLQEVLQAFAPLEEGVLIDCTLGLGGHSKAILSQKPHLKLIGIDKDKFAQEIAKER 61 Query: 78 MRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++ ++ +++L F++ ++ + G + GV+ DLGVSS+Q+D +RGF+F S LD Sbjct: 62 LKAFEGRYNLLSGGFAKRFKEALETHGKEIKGVLVDLGVSSLQLDDDNRGFNFH-SHALD 120 Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM G ++A V+N V L +I GE K+ +IAH I +RR PF+ +DLS Sbjct: 121 MRMDLEGDLNAQKVINSYPVVALEKIFKDYGEIKEYKKIAHKIAERRAKKPFKDAKDLSD 180 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 + SKN +IHPAT FQA+RI VN E+EEL + L+ A + LK G +L V+SFHSL Sbjct: 181 FLSS---LSKNKKIHPATLVFQAVRIEVNRELEELKEFLQCA-RNLK-GAILCVISFHSL 235 Query: 254 EDRLVKKFFASRSGKVMA---VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 ED LVK F + + SN H A+ + +TKK + P+ E++ NRRSRSAK Sbjct: 236 EDSLVKNAFKDYAKNCICDPLSFKCTCSNNH-ALGEILTKKPITPSPEEIKNNRRSRSAK 294 Query: 311 LR 312 +R Sbjct: 295 MR 296 >gi|229092966|ref|ZP_04224098.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus Rock3-42] gi|228690420|gb|EEL44205.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus Rock3-42] Length = 310 Score = 188 bits (477), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 114/304 (37%), Positives = 174/304 (57%), Gaps = 11/304 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 +HV VLL++ + L+ P +D T G GG+S G +IA D+D A+ + Sbjct: 3 NHVTVLLKETVDGLDIKPDGTYVDCTLGGGGHSSYLLSQLTEGGRLIAFDQDEIAIQNAK 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E Y EQF ++ F L + + + G VDG++FDLGVSS Q+D +RGFS+ P Sbjct: 63 EKFSSYGEQFITVKSNFRYLSEKLQELGITEVDGILFDLGVSSPQLDTPERGFSYHHDAP 122 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM ++A DVVN + + L RI GEEK + +IA I R++ +TT +L Sbjct: 123 LDMRMDQDAPLTAYDVVNNWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTGEL 182 Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 LI++ + ++ HPA R FQA+RI VN+E++ + L SA + +K GG + V++F Sbjct: 183 VELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRVSVITF 242 Query: 251 HSLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 HSLEDR+ K F S + ++ +IP P + + IT+K ++P+ ++ N R+RS Sbjct: 243 HSLEDRICKTTFKRNSTTPQLPPGLPIIPDEFKPKL-KLITRKPILPSDIELEENNRARS 301 Query: 309 AKLR 312 AKLR Sbjct: 302 AKLR 305 >gi|326797507|ref|YP_004315326.1| ribosomal RNA small subunit methyltransferase H [Sphingobacterium sp. 21] gi|326548271|gb|ADZ76656.1| Ribosomal RNA small subunit methyltransferase H [Sphingobacterium sp. 21] Length = 303 Score = 188 bits (477), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 118/302 (39%), Positives = 174/302 (57%), Gaps = 16/302 (5%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCG 74 G H+PV+L++ I L P V +D TFG GG+S + + +G +IA D+DP A++ Sbjct: 4 GYHLPVMLQECIEALAIKPNGVYVDVTFGGGGHSSAIIQHLGEEGRLIAFDQDPDALN-- 61 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + D E+F+L F L++ + +G VDG++ DLGVSS Q D +RGFS + Sbjct: 62 -NALPD--ERFTLIHQNFRYLKNNLRLQGLKQVDGILADLGVSSHQFDEAERGFSIRFDA 118 Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM G + A ++N + +DL RI G+ GE + A +A IV R S P T D Sbjct: 119 DLDMRMDRVGELDAKGILNSYSEEDLHRIFGMYGEVQNAKSLAKVIVTSRLSRPINTVSD 178 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L S++ K V K N+ + + FQALRI VN E+E L + L A+ LK GG L+V+S+ Sbjct: 179 LKSIVSKLVPRGKENKYY--AQLFQALRIEVNKELEALQEFLVQAQAVLKPGGRLVVMSY 236 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDRLVK F A K + + P F +++K ++ +++++ N R+RSAK Sbjct: 237 HSLEDRLVKNFMAKGKFKGEVEKDFYGNEIKP--FMLVSRKAIIASEDEIRQNNRARSAK 294 Query: 311 LR 312 LR Sbjct: 295 LR 296 >gi|270157407|ref|ZP_06186064.1| S-adenosyl-methyltransferase MraW [Legionella longbeachae D-4968] gi|289164199|ref|YP_003454337.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Legionella longbeachae NSW150] gi|269989432|gb|EEZ95686.1| S-adenosyl-methyltransferase MraW [Legionella longbeachae D-4968] gi|288857372|emb|CBJ11200.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Legionella longbeachae NSW150] Length = 308 Score = 188 bits (477), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 113/312 (36%), Positives = 175/312 (56%), Gaps = 22/312 (7%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS---FCKMGSNVIALDRDPFAVSC 73 + H VLL + I L + D TFG GG+S+ F + A+D+D A+ Sbjct: 1 MATHQSVLLHESITGLAIKSDGIYFDGTFGRGGHSKEILRFLNEEGRLYAIDKDLDAIMY 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGV----DGVVFDLGVSSMQIDCGDRGFSFQK 129 +E D ++F +FQ ++++++ + + GV DG++ DLGVSS Q+D +RGFSF + Sbjct: 61 AKEHF-DQDKRFHIFQGSYAKIEQFATEAGVLGMVDGILLDLGVSSPQLDNPERGFSFMQ 119 Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM S +SA+ VN+A ++T + + GEE+ A RIA AIV R AP TT Sbjct: 120 QGPLDMRMDRSQPMSAARFVNEAETDEMTSVFKLYGEERFAGRIAKAIVTARNIAPITTT 179 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ ++++ + ++ HPATR FQA+RI+VN E+ +L + L L G L+V+ Sbjct: 180 LQLAEIVKEANPKWEKHK-HPATRVFQAIRIYVNQELNDLERCLEQCIHVLAPKGRLVVI 238 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK------KVVVPTQEDVAF 302 SFHSLEDR+VK+F ++ P P ++ + K ++P Q +++ Sbjct: 239 SFHSLEDRIVKQFMKNKEEGAK------PPPEVPIRYKELKTNFKRIGKAIMPQQNEISE 292 Query: 303 NRRSRSAKLRAG 314 N R+RSA LR G Sbjct: 293 NVRARSAVLRIG 304 >gi|56707815|ref|YP_169711.1| S-adenosyl-methyltransferase MraW [Francisella tularensis subsp. tularensis SCHU S4] gi|110670286|ref|YP_666843.1| S-adenosyl-methyltransferase [Francisella tularensis subsp. tularensis FSC198] gi|224456886|ref|ZP_03665359.1| S-adenosyl-methyltransferase [Francisella tularensis subsp. tularensis MA00-2987] gi|254370311|ref|ZP_04986316.1| S-adenosyl-methyltransferase [Francisella tularensis subsp. tularensis FSC033] gi|254874629|ref|ZP_05247339.1| S-adenosyl-methyltransferase [Francisella tularensis subsp. tularensis MA00-2987] gi|68565439|sp|Q5NGY1|RSMH_FRATT RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|123169471|sp|Q14ID3|RSMH_FRAT1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|56604307|emb|CAG45328.1| S-adenosyl-methyltransferase [Francisella tularensis subsp. tularensis SCHU S4] gi|110320619|emb|CAL08711.1| S-adenosyl-methyltransferase [Francisella tularensis subsp. tularensis FSC198] gi|151568554|gb|EDN34208.1| S-adenosyl-methyltransferase [Francisella tularensis subsp. tularensis FSC033] gi|254840628|gb|EET19064.1| S-adenosyl-methyltransferase [Francisella tularensis subsp. tularensis MA00-2987] gi|282158991|gb|ADA78382.1| S-adenosyl-methyltransferase [Francisella tularensis subsp. tularensis NE061598] Length = 305 Score = 188 bits (477), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 120/307 (39%), Positives = 180/307 (58%), Gaps = 22/307 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77 H VLL++ I LN P + +DATFG GG+S++ +IA D+D A+S +E Sbjct: 2 HYSVLLQESINDLNINPQGIYIDATFGRGGHSKAILNRLTTGRLIAFDKDLDAISYAREN 61 Query: 78 MRDYKEQFSLFQ---ATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 QFS F+ A+F+ + DY +DG++ DLGVSS Q+D RGFSF + Sbjct: 62 F-----QFSNFEIVHASFASIYDYCLQHSLLGKIDGIIMDLGVSSPQLDNAARGFSFTHN 116 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTT 188 GPLDMRM S GI+AS + + +V DL+ I + GEE+ A +IA I +Q+ + T Sbjct: 117 GPLDMRMDVSKGITASQALEELSVDDLSYIFKVYGEERFAKKIALRIKDYIQQNGSIRKT 176 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ LI T+ K + +PATR FQALRI+VNNE+++L L + +K+GG + + Sbjct: 177 LELAELILATI--GKKEKKNPATRCFQALRIYVNNELKDLEALLENILAVIKSGGRIAAI 234 Query: 249 SFHSLEDRLVKKFFASR---SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 SFHSLEDR+VK+ F++ ++ + M+P ++ + ITKK ++++ N R Sbjct: 235 SFHSLEDRIVKQKFSALINPKQELNRITKMLPQDSSQIKLKWITKK-SKANEDELNQNVR 293 Query: 306 SRSAKLR 312 SRSA LR Sbjct: 294 SRSAILR 300 >gi|47097273|ref|ZP_00234832.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes str. 1/2a F6854] gi|254899261|ref|ZP_05259185.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes J0161] gi|254912599|ref|ZP_05262611.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Listeria monocytogenes J2818] gi|254936926|ref|ZP_05268623.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes F6900] gi|47014346|gb|EAL05320.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes str. 1/2a F6854] gi|258609526|gb|EEW22134.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes F6900] gi|293590591|gb|EFF98925.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Listeria monocytogenes J2818] Length = 312 Score = 188 bits (477), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 107/303 (35%), Positives = 175/303 (57%), Gaps = 11/303 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VLL + + +L P + +DAT G G+S ++ A D+D A+ + Sbjct: 4 HETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDNAKI 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + DY ++ + +A F +++ + ++G VDG+++DLGVSS Q+D +RGFS+ + L Sbjct: 64 KLADYSDKVTFIKANFRDMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQDAAL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM ++A VVN+ + +DL RI GEEK + +IA I +RR+ P +TT +L Sbjct: 124 DMRMDQEQELTAKTVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTGELV 183 Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + ++ HP R+FQA+RI VN+E+ + L A +K GG + V++FH Sbjct: 184 DIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLIKPGGRISVITFH 243 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+ K+ F A++ + +IP P F+ T+K +VP++E++ N R+RSA Sbjct: 244 SLEDRITKQLFQEATKGPDLPPGLPVIPDEYKPD-FKLATRKPIVPSEEELEQNNRARSA 302 Query: 310 KLR 312 KLR Sbjct: 303 KLR 305 >gi|46908277|ref|YP_014666.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes serotype 4b str. F2365] gi|254826203|ref|ZP_05231204.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL J1-194] gi|255520499|ref|ZP_05387736.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL J1-175] gi|51316263|sp|Q71XX2|RSMH_LISMF RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|46881548|gb|AAT04843.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes serotype 4b str. F2365] gi|293595444|gb|EFG03205.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL J1-194] Length = 312 Score = 187 bits (476), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 108/303 (35%), Positives = 175/303 (57%), Gaps = 11/303 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VLL + + +L P + +DAT G G+S ++ A D+D A+ + Sbjct: 4 HETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDNAKI 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + DY ++ + +A F +++ + ++G VDG+++DLGVSS Q+D +RGFS+ + L Sbjct: 64 KLADYSDKVTFIKANFRDMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQDAAL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM ++A VVN+ + +DL RI GEEK + +IA I +RR+ P +TT +L Sbjct: 124 DMRMDQEQELTAKIVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTGELV 183 Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + ++ HP R+FQA+RI VN+E+ + L A LK GG + V++FH Sbjct: 184 DIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLLKPGGRISVITFH 243 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+ K+ F A++ + +IP P F+ T+K +VP++E++ N R+RSA Sbjct: 244 SLEDRITKQLFQEATKGPDLPPGLPVIPDEYKPD-FKLATRKPIVPSEEELEQNNRARSA 302 Query: 310 KLR 312 KLR Sbjct: 303 KLR 305 >gi|148549600|ref|YP_001269702.1| S-adenosyl-methyltransferase MraW [Pseudomonas putida F1] gi|262825108|sp|A5W8Q8|RSMH_PSEP1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|148513658|gb|ABQ80518.1| S-adenosyl-methyltransferase MraW [Pseudomonas putida F1] Length = 315 Score = 187 bits (476), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 122/307 (39%), Positives = 176/307 (57%), Gaps = 18/307 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMG--SNVIALDRDPFAVSCGQ 75 +H+ VLL++ + L LD TFG GG+SR K+G ++ D+DP A++ GQ Sbjct: 8 NHITVLLDEAVEALALRADGCYLDGTFGRGGHSRLILSKLGPQGRLLGFDKDPQAIATGQ 67 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +F + Q +F++L V +G V GV+ DLGVSS Q+D +RGFSF G Sbjct: 68 -ALAAEDGRFVIVQRSFAELGAEVAARGLHGKVSGVLLDLGVSSPQLDDPERGFSFLNDG 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ GISA++ + A V+++ R+ GEE+ A R+A A+V+RR+ PF T D Sbjct: 127 PLDMRMNPDQGISAAEFIATAPVEEIARVFKEYGEERFAGRMARAVVERREKQPFTRTAD 186 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ ++ K + +PATR+FQ LRI VNNE+ +L GL +A AL+ GG L V+SF Sbjct: 187 LAEVL-KVANPAWEKGKNPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLAVISF 245 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITK---KVVVPTQEDVAFNRR 305 HSLEDR+VK F V +P N VF+ K K ++ ++ N R Sbjct: 246 HSLEDRIVKLFMRK---LVKGEADNLPRNLPVQHKVFEPKIKLIGKAQFASEAELKANPR 302 Query: 306 SRSAKLR 312 SRSA +R Sbjct: 303 SRSAVMR 309 >gi|319649673|ref|ZP_08003829.1| S-adenosyl-methyltransferase MraW [Bacillus sp. 2_A_57_CT2] gi|317398835|gb|EFV79517.1| S-adenosyl-methyltransferase MraW [Bacillus sp. 2_A_57_CT2] Length = 310 Score = 187 bits (476), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 112/304 (36%), Positives = 172/304 (56%), Gaps = 11/304 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 +H VLL++ + LN P V +D T G G+S S + A D+D A++ + Sbjct: 3 EHTTVLLKETVEGLNIHPDGVYVDCTLGGAGHSELILSQLSEKGKLYAFDQDDTAIAHAK 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + +Y ++ ++ ++ F LQ+ + + GV DGV++DLGVSS Q+D +RGFS+ P Sbjct: 63 EKLAEYGDRITIIKSNFKYLQEELANLGVSKVDGVLYDLGVSSPQLDTPERGFSYHNDAP 122 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM ISA DVVN+ +L +I GEEK + +IA I R+ +P +TT L Sbjct: 123 LDMRMDTGADISAYDVVNRWEYGELVKIFFRYGEEKFSKQIARKIEAAREVSPIETTGQL 182 Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 LI++ + ++ HPA R FQA+RI VN+E+ L A L G + V++F Sbjct: 183 VELIKEAIPAPARRKGGHPAKRVFQAIRIAVNDELGVFEDSLHQAIDILNPNGRISVITF 242 Query: 251 HSLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 HSLEDR+ K F AS + + +IP P + + I +K ++P++E++ N R+RS Sbjct: 243 HSLEDRICKAAFKKASETPNLPPGLPIIPDEYKP-ILKLINRKPILPSEEELEHNNRARS 301 Query: 309 AKLR 312 AKLR Sbjct: 302 AKLR 305 >gi|256545404|ref|ZP_05472767.1| S-adenosyl-methyltransferase MraW [Anaerococcus vaginalis ATCC 51170] gi|256398965|gb|EEU12579.1| S-adenosyl-methyltransferase MraW [Anaerococcus vaginalis ATCC 51170] Length = 306 Score = 187 bits (476), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 114/305 (37%), Positives = 166/305 (54%), Gaps = 12/305 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76 H VLL + I LN + D T G GG+S+ K + N +I LD+D A+ +E Sbjct: 5 HKSVLLNETIENLNIKEDGIYADLTLGKGGHSKEILKKLSPNGLLIGLDQDKDAIKAARE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++D+ F F +++ + + G +DG + D+GVSS QID GDRGFS+ K GPL Sbjct: 65 NLKDFSNVL-YFNENFENIENVLDEAGFNRIDGALMDIGVSSYQIDNGDRGFSYMKDGPL 123 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ ++A +VN ++ +L +I GEE+ + IA AIV R+ TT L Sbjct: 124 DMRMNKDNELTAKQIVNDYSLDELWKIFSEYGEERYSKTIAKAIVDYRKMHEINTTLQLR 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +++ K+V S+ HP R FQALRI VN E+E L L L G L V++FHS Sbjct: 184 NIVMKSVNTSE---AHPEKRVFQALRIEVNRELEVLENTLEKIVDRLNKNGRLCVITFHS 240 Query: 253 LEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK F S K + + H + I+KK ++P+++++ N RS SAKL Sbjct: 241 LEDRIVKNKFKEMSKKCICPPDFPVCVCNHEKKVKLISKKPILPSKDELKNNNRSHSAKL 300 Query: 312 RAGMR 316 R R Sbjct: 301 RVCER 305 >gi|241257348|ref|XP_002404552.1| SAM dependent methyltransferase, putative [Ixodes scapularis] gi|215496661|gb|EEC06301.1| SAM dependent methyltransferase, putative [Ixodes scapularis] Length = 292 Score = 187 bits (476), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 115/288 (39%), Positives = 172/288 (59%), Gaps = 13/288 (4%) Query: 39 VILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95 V +D TFG GG+SR S + +I +D+DP A++ QE + + ++ + F L Sbjct: 8 VYVDCTFGRGGHSRLLLSHLSPQARLIVIDKDPQAIAVAQE-LAAQDSRVTVVHSGFGDL 66 Query: 96 QDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQA 151 + + V GV+ DLG+SS QID +RGFSF + GPLDMRM SG ++A + + Sbjct: 67 AQALDELEVGPLQGVMMDLGISSPQIDDAERGFSFMREGPLDMRMDTSGGLTAEQWLAEV 126 Query: 152 NVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPAT 211 +V+ L ++ GEE+ A +IA AIV RRQS P TT+DL+ L+ V + + HPAT Sbjct: 127 SVEVLKEVIAEYGEERFAFQIAKAIVDRRQSRPLHTTRDLAELVAGVVRTREKGQ-HPAT 185 Query: 212 RSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF--ASRSGKV 269 R+FQA+RI++N E+EELA L S L G L V++FHSLEDR+VK+F A+R + Sbjct: 186 RTFQAIRIYLNRELEELAYALPSILSRLATRGRLAVIAFHSLEDRMVKQFMNAAARPAQE 245 Query: 270 MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 + ++ + + QS+ + ++PT E+ + N R+RSA LR RT Sbjct: 246 QSRLPILEKDLPQPLVQSLGR--ILPTDEESSDNPRARSAVLRVVQRT 291 >gi|257483456|ref|ZP_05637497.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289624974|ref|ZP_06457928.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647032|ref|ZP_06478375.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv. aesculi str. 2250] gi|298488527|ref|ZP_07006557.1| 16S rRNA m(4)C1402 methyltransferase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156868|gb|EFH97958.1| 16S rRNA m(4)C1402 methyltransferase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330868707|gb|EGH03416.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330987126|gb|EGH85229.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011570|gb|EGH91626.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 313 Score = 187 bits (476), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 117/305 (38%), Positives = 177/305 (58%), Gaps = 16/305 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H+ VLLE+ + L LD TFG GG+SR ++G + ++ D+DP A++ GQ Sbjct: 7 HITVLLEEAVEALAVRADGCYLDGTFGRGGHSRLILSQLGPDGRLLGFDKDPQAIATGQ- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F + Q +F++L ++G V G++ DLGVSS Q+D +RGFSF GP Sbjct: 66 ALAAEDGRFVIVQRSFAELGSEAQERGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDGP 125 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G+SA++ + A +++ R+ GEE+ A R+A+A+V RR+ PF+ T DL Sbjct: 126 LDMRMDPTRGVSAAEFIATAPAEEIARVFKEYGEERFAKRMANAVVARREVQPFERTADL 185 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ K + +PATR+FQ LRI VNNE+ +L GL +A AL+ GG L+V+SFH Sbjct: 186 AEVL-KVANPAWEKGKNPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLVVISFH 244 Query: 252 SLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQ---SITKKVVVPTQEDVAFNRRSR 307 SLEDR+VK F + G+ + +P P F+ I K + + N RSR Sbjct: 245 SLEDRIVKLFMRKLAKGEADNMPRNLPIQFKP--FEPKIKIHGKAQFASDTETKANPRSR 302 Query: 308 SAKLR 312 SA +R Sbjct: 303 SAVMR 307 >gi|169827004|ref|YP_001697162.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Lysinibacillus sphaericus C3-41] gi|263456365|sp|B1HPY0|RSMH_LYSSC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|168991492|gb|ACA39032.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Lysinibacillus sphaericus C3-41] Length = 316 Score = 187 bits (476), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 115/304 (37%), Positives = 174/304 (57%), Gaps = 11/304 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 DH VLL++ + LN P V +D T G G+S + S+ +I D+D A+ + Sbjct: 3 DHTTVLLKETVDGLNIDPDGVYVDCTLGGAGHSEYLVQQLSDKGRLICFDQDMTAIENAK 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + Y E+ + + F L++ + G VDG+++DLGVSS Q+D +RGFS+ P Sbjct: 63 IRLAPYIERVTFIHSNFRYLKEELLAHGFEQVDGILYDLGVSSPQLDTPERGFSYHHDAP 122 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + ++A +VVNQ +DL RI GEEK + ++A I + R+SAP +TT L Sbjct: 123 LDMRMDQTATLTAFEVVNQWAYEDLVRIFFRYGEEKFSKQVARKIEEARKSAPIETTGQL 182 Query: 192 SSLIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 LI++ + + + HPA R FQA+RI VN+E+ L A + GG + V++F Sbjct: 183 VELIKEGIPAAARRKGGHPAKRIFQAIRIAVNDELGAAEDSLVDAIDMINVGGRISVITF 242 Query: 251 HSLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 HSLEDRL K F AS ++ +IP + P + + IT+K +VP+ E++ N R+RS Sbjct: 243 HSLEDRLCKTIFKEASSLPELPPNLPVIPDDMKPTL-KLITRKPIVPSDEELEVNNRARS 301 Query: 309 AKLR 312 AKLR Sbjct: 302 AKLR 305 >gi|67969111|dbj|BAE00910.1| unnamed protein product [Macaca fascicularis] Length = 450 Score = 187 bits (476), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 111/295 (37%), Positives = 161/295 (54%), Gaps = 52/295 (17%) Query: 20 HVPVLLEKVIALLNPAPGKV---------------------------------ILDATFG 46 H+PV++++V+ L+P G++ LD TFG Sbjct: 72 HIPVMVDEVVHCLSPQKGQISFMCIVLFAYPNNLVMWTRMVHLHTRKLRLREIFLDMTFG 131 Query: 47 AGGYSRSFCKMGSNVI--ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV 104 +GG++++ + S+++ ALDRDP A + + Y ++ FSQ + + GV Sbjct: 132 SGGHTKAILQKESDIVLYALDRDPTAYALAEHLSELYPKKIRAVLGQFSQAEALLTKAGV 191 Query: 105 -----DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI----SASDVVNQANVKD 155 DGV+ DLG SSMQ+D +RGFS +K GPLDMRM +A+DVVN + Sbjct: 192 QPGTFDGVLMDLGCSSMQLDTPERGFSLRKDGPLDMRMDGGRYPDMPTAADVVNALDQPA 251 Query: 156 LTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ-----KTVYFSKN---NRI 207 L IL GEEK A +IA AIV+ R P TQ L+S++ +Y K+ Sbjct: 252 LASILRTYGEEKHARKIASAIVQARSIYPITRTQQLASIVAGAFPPSAIYARKDLLQRST 311 Query: 208 HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF 262 H AT++FQALRIFVNNE+ EL GL++A+K L+ GG L+ +SFHSLEDR++K+F Sbjct: 312 HIATKTFQALRIFVNNELNELYTGLKTAQKFLRPGGRLVALSFHSLEDRIIKRFL 366 >gi|16804080|ref|NP_465565.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes EGD-e] gi|224498509|ref|ZP_03666858.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes Finland 1988] gi|224501159|ref|ZP_03669466.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL R2-561] gi|254827071|ref|ZP_05231758.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL N3-165] gi|284802488|ref|YP_003414353.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes 08-5578] gi|284995630|ref|YP_003417398.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes 08-5923] gi|20138988|sp|Q8Y5L7|RSMH_LISMO RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|16411511|emb|CAD00119.1| lmo2041 [Listeria monocytogenes EGD-e] gi|258599454|gb|EEW12779.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL N3-165] gi|284058050|gb|ADB68991.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes 08-5578] gi|284061097|gb|ADB72036.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes 08-5923] Length = 312 Score = 187 bits (476), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 107/303 (35%), Positives = 175/303 (57%), Gaps = 11/303 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VLL + + +L P + +DAT G G+S ++ A D+D A+ + Sbjct: 4 HETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDNAKI 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + DY ++ + +A F +++ + ++G VDG+++DLGVSS Q+D +RGFS+ + L Sbjct: 64 KLADYSDKVTFIKANFRDMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQDAAL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM ++A VVN+ + +DL RI GEEK + +IA I +RR+ P +TT +L Sbjct: 124 DMRMDQEQELTAKTVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTGELV 183 Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + ++ HP R+FQA+RI VN+E+ + L A +K GG + V++FH Sbjct: 184 DIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLIKPGGRISVITFH 243 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+ K+ F A++ + +IP P F+ T+K +VP++E++ N R+RSA Sbjct: 244 SLEDRITKQLFQEATKGPDLPPGLPVIPDEYKPD-FKLATRKPIVPSEEELEQNNRARSA 302 Query: 310 KLR 312 KLR Sbjct: 303 KLR 305 >gi|30263920|ref|NP_846297.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. Ames] gi|47529351|ref|YP_020700.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. 'Ames Ancestor'] gi|52141570|ref|YP_085259.1| S-adenosyl-methyltransferase MraW [Bacillus cereus E33L] gi|65321245|ref|ZP_00394204.1| COG0275: Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Bacillus anthracis str. A2012] gi|118479138|ref|YP_896289.1| S-adenosyl-methyltransferase MraW [Bacillus thuringiensis str. Al Hakam] gi|165872265|ref|ZP_02216902.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0488] gi|167641107|ref|ZP_02399362.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0193] gi|170709248|ref|ZP_02899669.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0389] gi|177655554|ref|ZP_02936964.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0174] gi|190566055|ref|ZP_03018974.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis Tsiankovskii-I] gi|196035938|ref|ZP_03103340.1| S-adenosyl-methyltransferase MraW [Bacillus cereus W] gi|196038800|ref|ZP_03106108.1| S-adenosyl-methyltransferase MraW [Bacillus cereus NVH0597-99] gi|196045790|ref|ZP_03113019.1| S-adenosyl-methyltransferase MraW [Bacillus cereus 03BB108] gi|218905049|ref|YP_002452883.1| S-adenosyl-methyltransferase MraW [Bacillus cereus AH820] gi|225865900|ref|YP_002751278.1| S-adenosyl-methyltransferase MraW [Bacillus cereus 03BB102] gi|227813172|ref|YP_002813181.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. CDC 684] gi|228916556|ref|ZP_04080122.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228928967|ref|ZP_04091999.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935234|ref|ZP_04098060.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228947638|ref|ZP_04109928.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229123432|ref|ZP_04252636.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus 95/8201] gi|229186159|ref|ZP_04313328.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus BGSC 6E1] gi|229603937|ref|YP_002868154.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0248] gi|254721453|ref|ZP_05183242.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A1055] gi|254735959|ref|ZP_05193665.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. Western North America USA6153] gi|254754371|ref|ZP_05206406.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. Vollum] gi|254756738|ref|ZP_05208767.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. Australia 94] gi|301055409|ref|YP_003793620.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis CI] gi|33301354|sp|Q81WC3|RSMH_BACAN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|77416580|sp|Q636A8|RSMH_BACCZ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446803|sp|C3P688|RSMH_BACAA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446820|sp|C3L6F3|RSMH_BACAC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446828|sp|A0RHT9|RSMH_BACAH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446838|sp|B7JK06|RSMH_BACC0 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446859|sp|C1EPT2|RSMH_BACC3 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|30258564|gb|AAP27783.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. Ames] gi|47504499|gb|AAT33175.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. 'Ames Ancestor'] gi|51975039|gb|AAU16589.1| S-adenosyl-methyltransferase [Bacillus cereus E33L] gi|118418363|gb|ABK86782.1| S-adenosyl-methyltransferase [Bacillus thuringiensis str. Al Hakam] gi|164711941|gb|EDR17481.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0488] gi|167510887|gb|EDR86278.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0193] gi|170125855|gb|EDS94761.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0389] gi|172080083|gb|EDT65180.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0174] gi|190562974|gb|EDV16940.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis Tsiankovskii-I] gi|195991587|gb|EDX55553.1| S-adenosyl-methyltransferase MraW [Bacillus cereus W] gi|196023230|gb|EDX61908.1| S-adenosyl-methyltransferase MraW [Bacillus cereus 03BB108] gi|196030523|gb|EDX69122.1| S-adenosyl-methyltransferase MraW [Bacillus cereus NVH0597-99] gi|218537984|gb|ACK90382.1| S-adenosyl-methyltransferase MraW [Bacillus cereus AH820] gi|225790748|gb|ACO30965.1| S-adenosyl-methyltransferase MraW [Bacillus cereus 03BB102] gi|227005932|gb|ACP15675.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. CDC 684] gi|228597335|gb|EEK54986.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus BGSC 6E1] gi|228660208|gb|EEL15844.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus 95/8201] gi|228812158|gb|EEM58489.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228824399|gb|EEM70205.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830774|gb|EEM76379.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228843135|gb|EEM88217.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229268345|gb|ACQ49982.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0248] gi|300377578|gb|ADK06482.1| S-adenosyl-methyltransferase MraW [Bacillus cereus biovar anthracis str. CI] Length = 310 Score = 187 bits (476), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 114/304 (37%), Positives = 174/304 (57%), Gaps = 11/304 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 +HV VLL++ + L+ P +D T G GG+S G +IA D+D A+ + Sbjct: 3 NHVTVLLKETVDGLDIKPDGTYVDCTLGGGGHSSYLLSQLTEGGRLIAFDQDEIAIQNAK 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E Y EQF ++ F L + + + G VDG++FDLGVSS Q+D +RGFS+ P Sbjct: 63 EKFSSYGEQFITVKSNFRYLSEKLQELGITEVDGILFDLGVSSPQLDTPERGFSYHHDAP 122 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM ++A DVVN + + L RI GEEK + +IA I R++ +TT +L Sbjct: 123 LDMRMDQDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTGEL 182 Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 LI++ + ++ HPA R FQA+RI VN+E++ + L SA + +K GG + V++F Sbjct: 183 VELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRVSVITF 242 Query: 251 HSLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 HSLEDR+ K F S + ++ +IP P + + IT+K ++P+ ++ N R+RS Sbjct: 243 HSLEDRICKTTFKRNSTTPQLPPGLPIIPDEFKPKL-KLITRKPILPSDIELEENNRARS 301 Query: 309 AKLR 312 AKLR Sbjct: 302 AKLR 305 >gi|108563117|ref|YP_627433.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori HPAG1] gi|122980507|sp|Q1CTG3|RSMH_HELPH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|107836890|gb|ABF84759.1| hypothetical protein HPAG1_0692 [Helicobacter pylori HPAG1] Length = 308 Score = 187 bits (476), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 120/304 (39%), Positives = 179/304 (58%), Gaps = 20/304 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVSCGQET 77 H VLL++V+ P V++D T G GG+S++ K +I +D+D FA +E Sbjct: 8 HQSVLLQEVLQAFTPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFAQEIAKER 67 Query: 78 MRDYKEQFSLFQATFSQ-----LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 ++ ++ +++L F++ L+ + +K + GV+ DLGVSS+Q+D +RGF+F S Sbjct: 68 LKAFEGRYNLLSGGFAKRFKEALETH--NKEIKGVLVDLGVSSLQLDDDNRGFNFH-SHT 124 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S ++A V+N V L +I GE K+ +IAH I +RR PF+ +DL Sbjct: 125 LDMRMDLKSDLNAQKVINSYPVVALEKIFRDYGEIKEYKKIAHKIAERRAKKPFKDAKDL 184 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 S + SKN +IHPAT FQA+RI VN+E+EEL + L+ A + LK G +L V+SFH Sbjct: 185 SDFLSS---LSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCA-RNLK-GAILCVISFH 239 Query: 252 SLEDRLVKKFFASRSGKVM---AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SLED LVK F + + + SN H A+ +TKK + P+ E++ NRRSRS Sbjct: 240 SLEDALVKNAFKDYAKNCICDPSSFQCTCSNNH-ALGAILTKKPITPSPEEIKNNRRSRS 298 Query: 309 AKLR 312 AK+R Sbjct: 299 AKMR 302 >gi|308182803|ref|YP_003926930.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori PeCan4] gi|308064988|gb|ADO06880.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori PeCan4] Length = 308 Score = 187 bits (476), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 119/304 (39%), Positives = 178/304 (58%), Gaps = 20/304 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVSCGQET 77 H VLL++V+ P V++D T G GG+S++ K +I +D+D FA +E Sbjct: 8 HQSVLLQEVLQAFAPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFAQEIAKER 67 Query: 78 MRDYKEQFSLFQATFSQ-----LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 ++ ++ +++L F++ L+ + DK + GV+ DLGVSS+Q+D +RGF+F S Sbjct: 68 LKAFEGRYNLLSGGFAKRFKEALETH--DKEIKGVLVDLGVSSLQLDDDNRGFNFH-SHA 124 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM G ++A V+N + L +I GE ++ +IAH I +RR PF+ +DL Sbjct: 125 LDMRMDLEGDLNAQKVINSYPIVALEKIFKDYGEIREYKKIAHKIAERRAKKPFKDAKDL 184 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 S + SKN +IHPAT FQA+RI VN+E+EEL + L+ A + LK G +L V+SFH Sbjct: 185 SDFLSS---LSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCA-RNLK-GAILCVISFH 239 Query: 252 SLEDRLVKKFFASRSGKVMA---VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SLED LVK F + + SN H A+ +TKK + P+ E++ NRRSRS Sbjct: 240 SLEDALVKNSFKDYAKNCVCDPLSFKCTCSNNH-ALGAILTKKPITPSPEEIKNNRRSRS 298 Query: 309 AKLR 312 AK+R Sbjct: 299 AKMR 302 >gi|52080116|ref|YP_078907.1| S-adenosyl-methyltransferase MraW [Bacillus licheniformis ATCC 14580] gi|52785490|ref|YP_091319.1| S-adenosyl-methyltransferase MraW [Bacillus licheniformis ATCC 14580] gi|319646109|ref|ZP_08000339.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus sp. BT1B_CT2] gi|59799852|sp|Q65JY8|RSMH_BACLD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|52003327|gb|AAU23269.1| putative methyltransferase [Bacillus licheniformis ATCC 14580] gi|52347992|gb|AAU40626.1| YlxA [Bacillus licheniformis ATCC 14580] gi|317391859|gb|EFV72656.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus sp. BT1B_CT2] Length = 312 Score = 187 bits (476), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 114/311 (36%), Positives = 174/311 (55%), Gaps = 11/311 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 +H VLL++ + LN +D T G G+S S ++A D+D A+ + Sbjct: 3 EHTTVLLKETVDGLNVKEDGTYVDCTLGGAGHSEYLLSQLSEKGKLVAFDQDETALRHAK 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + DY+ Q ++ F L+D + + G VDGV+FDLGVSS Q+D +RGFS+ P Sbjct: 63 EKLADYEGQVVFIKSNFRYLKDRLNEIGITKVDGVLFDLGVSSPQLDTPERGFSYHHDAP 122 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G+SA +VVN+ +DL +I GEEK + +IA I K R+ +P +TT L Sbjct: 123 LDMRMDQSAGLSAKEVVNEWPYEDLVKIFFKYGEEKFSKQIARKIEKAREQSPIETTGQL 182 Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I++ + ++ + HPA R FQA+RI VN+E+ + L A + LK GG + V++F Sbjct: 183 VDIIKEAIPAPARRSGGHPAKRIFQAIRIAVNDELRVFEEALLQAIEVLKPGGRVSVITF 242 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 HSLEDR+ K F S + IP P + + + +K + ++E++ N R+RS Sbjct: 243 HSLEDRICKSTFKDMSSPPELPHGLPVIPKEFEPKL-KLVNRKPITASEEELEHNNRARS 301 Query: 309 AKLRAGMRTVE 319 AKLR + E Sbjct: 302 AKLRIAEKARE 312 >gi|330973397|gb|EGH73463.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv. aceris str. M302273PT] Length = 313 Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 117/305 (38%), Positives = 176/305 (57%), Gaps = 16/305 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H+ VLLE+ + L LD TFG GG+SR ++G + ++ D+DP A++ GQ Sbjct: 7 HITVLLEEAVEALAVRADGCYLDGTFGRGGHSRLILSQLGPDGRLLGFDKDPQAIATGQ- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F + Q +F++L ++G V G++ DLGVSS Q+D +RGFSF GP Sbjct: 66 ALAAEDGRFVIVQRSFAELGSETQERGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDGP 125 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM G+SA++ + A +++ R+ GEE+ A R+A+A+V RR+ PF+ T DL Sbjct: 126 LDMRMDPARGVSAAEFIATAPAEEIARVFKEYGEERFAKRMANAVVARREVQPFERTADL 185 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ K + +PATR+FQ LRI VNNE+ +L GL +A AL+ GG L+V+SFH Sbjct: 186 AEVL-KVANPAWEKGKNPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLVVISFH 244 Query: 252 SLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQ---SITKKVVVPTQEDVAFNRRSR 307 SLEDR+VK F + G+ + +P P F+ I K + + N RSR Sbjct: 245 SLEDRIVKLFMRKLAKGEADNMPRNLPIQFKP--FEPKIKIHGKAQFASDAETKANPRSR 302 Query: 308 SAKLR 312 SA +R Sbjct: 303 SAVMR 307 >gi|126665254|ref|ZP_01736237.1| S-adenosyl-methyltransferase MraW [Marinobacter sp. ELB17] gi|126630624|gb|EBA01239.1| S-adenosyl-methyltransferase MraW [Marinobacter sp. ELB17] Length = 325 Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 124/311 (39%), Positives = 180/311 (57%), Gaps = 19/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQE 76 H VLL+ + LL G +DATFG GG+SR ++ N ++ +D+DP A+ + Sbjct: 15 HRSVLLDSAVDLLLTDSGGRYVDATFGRGGHSRMILERLAENGALLGIDKDPQAIDEAR- 73 Query: 77 TMRDYKEQFSLFQATFSQL-----QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 T+ +F+ F +F+ L Q + P V+GV+ DLGVSS Q+D RGFSF + G Sbjct: 74 TLAAADSRFNAFHGSFADLGQALEQAHWPQ--VEGVLMDLGVSSPQLDDASRGFSFMRQG 131 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ SA++ + A+ K + ++ GEE+ + RIA IV+RR AP TT + Sbjct: 132 PLDMRMNPQQAPSAAEWLASADEKVIADVIFKYGEERFSRRIARLIVERRAEAPITTTLE 191 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ L K V K HPATR+FQA+RIF+N E+E+L GL++A + L GG L+V+SF Sbjct: 192 LAELAAKAVP-KKEKHKHPATRTFQAIRIFINRELEDLELGLKAAAEKLAPGGRLVVISF 250 Query: 251 HSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDRLVK+F + G M + + + ++ I K + E V+ N R+RSA Sbjct: 251 HSLEDRLVKRFMRDLARGPQMPKGIPVTAAEESSAYRLIGKPSKAASDE-VSDNVRARSA 309 Query: 310 KLRAGMRTVER 320 MR +ER Sbjct: 310 V----MRVLER 316 >gi|253681660|ref|ZP_04862457.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum D str. 1873] gi|253561372|gb|EES90824.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum D str. 1873] Length = 309 Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 110/305 (36%), Positives = 174/305 (57%), Gaps = 7/305 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 +HVPVLLE+ I LN + +D T G G+S K S +I +D+D A+ + Sbjct: 4 NHVPVLLEETIDSLNIKEDGIYVDCTLGGAGHSSYILKRLSKKGKLIGIDQDINALKAAK 63 Query: 76 ETMRDYKEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 E +++Y + + + + D + + VDG++ DLGVSS Q+D +RGFS+ + L Sbjct: 64 EKLKNYDNVIYVHNNFYNLASVLDELNIEKVDGILMDLGVSSYQLDTAERGFSYMQDAVL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +SA ++VN+ + ++L RI+ GEE+ A +IA AIVK+R+ P +TT +L Sbjct: 124 DMRMNTEESVSAYNIVNEYSEEELFRIIKEYGEERFARKIAKAIVKQREIEPVKTTLELV 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+K + HPA ++FQA+RI VN+E+E L + + K L + G + +++FHS Sbjct: 184 KIIKKVIPMKFQQGGHPAKKTFQAIRIEVNHELEILNKTIEDGVKHLNSHGRISIITFHS 243 Query: 253 LEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK F + I V + IT+K + P+QE+ N RS+S+KL Sbjct: 244 LEDRIVKNKFKELENPCTCPKEFPICICGMKPVVKVITRKPLEPSQEEKENNSRSKSSKL 303 Query: 312 RAGMR 316 R R Sbjct: 304 RVAQR 308 >gi|315283083|ref|ZP_07871351.1| S-adenosyl-methyltransferase MraW [Listeria marthii FSL S4-120] gi|313613270|gb|EFR87146.1| S-adenosyl-methyltransferase MraW [Listeria marthii FSL S4-120] Length = 312 Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 106/303 (34%), Positives = 175/303 (57%), Gaps = 11/303 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VLL + + +L P + +DAT G G+S ++ A D+D A+ + Sbjct: 4 HETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDNAEI 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + DY ++ + +A F +++ + ++G VDG+++DLGVSS Q+D +RGFS+ + L Sbjct: 64 KLADYSDKVTFIKANFRDMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQDAAL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM ++A +VN+ + +DL RI GEEK + +IA I +RR+ P +TT +L Sbjct: 124 DMRMDQEQELTAKTIVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTGELV 183 Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + ++ HP R+FQA+RI VN+E+ + L A +K GG + V++FH Sbjct: 184 DIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLIKPGGRISVITFH 243 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+ K+ F A++ + +IP P F+ T+K +VP++E++ N R+RSA Sbjct: 244 SLEDRITKQLFQEATKGPDLPPGLPVIPDEYKPD-FKLATRKPIVPSEEELEQNNRARSA 302 Query: 310 KLR 312 KLR Sbjct: 303 KLR 305 >gi|218437172|ref|YP_002375501.1| S-adenosyl-methyltransferase MraW [Cyanothece sp. PCC 7424] gi|263447401|sp|B7K9F0|RSMH_CYAP7 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|218169900|gb|ACK68633.1| S-adenosyl-methyltransferase MraW [Cyanothece sp. PCC 7424] Length = 299 Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 117/303 (38%), Positives = 174/303 (57%), Gaps = 29/303 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 H+PVL +++I L+ PG LDAT G GG+SR + +V A+DRD A++ Sbjct: 17 HIPVLTQELIKGLDICPGGHYLDATVGGGGHSRQILETYGDVQVTAIDRDEVAIAAATTN 76 Query: 78 MRDYK-EQFSLFQATFSQLQDYVP-DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + DY ++ + + F+ DY P + DG++ DLGVSS Q+D +RGFSF+ PLDM Sbjct: 77 LADYNTDRLTFWTGNFA---DYDPGNLKFDGIIADLGVSSPQLDSPERGFSFRLDAPLDM 133 Query: 136 RMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM +A+D++N + +L + GEE+ + +IA IVK+R PF +T +L+ + Sbjct: 134 RMDRRQSTTAADIINSYSEIELANLFYNYGEERLSRQIAKQIVKQR---PFFSTTELAEV 190 Query: 195 IQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 I ++V + RIHPATR FQ LRI VN E++ L L + LK G++ ++SFHSL Sbjct: 191 ISRSVPPKYRYGRIHPATRVFQGLRIAVNQELDSLESFLAKSPSWLKTNGIIGIISFHSL 250 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 EDR+VK H + A P + + +TKK ++P ++ A N RSRSAKLR Sbjct: 251 EDRIVK--------------HQL--RASP-LLKVLTKKPIIPQSDEQAKNPRSRSAKLRL 293 Query: 314 GMR 316 R Sbjct: 294 AQR 296 >gi|47093593|ref|ZP_00231351.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes str. 4b H7858] gi|47018017|gb|EAL08792.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes str. 4b H7858] gi|328466075|gb|EGF37248.1| 16S rRNA m(4)C1402 methyltranserfase [Listeria monocytogenes 1816] Length = 312 Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 108/303 (35%), Positives = 175/303 (57%), Gaps = 11/303 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VLL + + +L P + +DAT G G+S ++ A D+D A++ + Sbjct: 4 HETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAINNAKI 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + DY ++ + +A F +++ + ++G VDG+++DLGVSS Q+D +RGFS+ + L Sbjct: 64 KLADYSDKVTFIKANFRDMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQDAAL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM ++A VVN+ + +DL RI GEEK + +IA I +RR+ P +TT +L Sbjct: 124 DMRMDQEQELTAKIVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTGELV 183 Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + ++ HP R+FQA+RI VN+E+ + L A LK GG + V++FH Sbjct: 184 DIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLLKPGGRISVITFH 243 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+ K F A++ + +IP P F+ T+K +VP++E++ N R+RSA Sbjct: 244 SLEDRITKHLFQEATKGPDLPPGLPVIPDEYKPD-FKLATRKPIVPSEEELEQNNRARSA 302 Query: 310 KLR 312 KLR Sbjct: 303 KLR 305 >gi|300788105|ref|YP_003768396.1| S-adenosyl-methyltransferase [Amycolatopsis mediterranei U32] gi|299797619|gb|ADJ47994.1| S-adenosyl-methyltransferase [Amycolatopsis mediterranei U32] Length = 317 Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 120/320 (37%), Positives = 180/320 (56%), Gaps = 22/320 (6%) Query: 16 TIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYS----RSFCKMGSNVIALDRDP 68 T +HVPVLL +++ L P V++DAT G GG+S +F ++ ++ALDRDP Sbjct: 2 TAPEHVPVLLSRIVELFTPVFTDRDGVLVDATVGLGGHSDALLEAFPRL--RLVALDRDP 59 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGF 125 A+ E + + ++ + L + + G+ DG++FDLGVSSMQ+D +RGF Sbjct: 60 AALEKSAERLARHGDRVDFVHTVYDGLPEALESVGLEKADGILFDLGVSSMQLDRAERGF 119 Query: 126 SFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 ++ K PLDMRM +G +A+DV+N +L RIL GEE+ A RI A+V R+ P Sbjct: 120 AYSKDSPLDMRMDPTTGFTAADVLNTYAPGELIRILRDYGEERFAQRIVKAVVAAREKEP 179 Query: 185 FQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 F T+ L L+ V ++ HPA R+FQALRI VN E+E L + + +A AL GG Sbjct: 180 FTTSGRLVELLYDAVPAATRRTGGHPAKRTFQALRIEVNGELEVLRRAMPAALGALPVGG 239 Query: 244 LLIVVSFHSLEDRLVKKFFA----SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 ++V S+ SLEDRLVK+ A SR+ + + V +P H + +T+ +E+ Sbjct: 240 RIVVESYQSLEDRLVKQALAELAKSRTPEGLPVE--LP--GHGPELKLLTRGAEKAGEEE 295 Query: 300 VAFNRRSRSAKLRAGMRTVE 319 + N R+ S +LRA R E Sbjct: 296 IERNPRAASVRLRAAERIGE 315 >gi|153854700|ref|ZP_01995950.1| hypothetical protein DORLON_01948 [Dorea longicatena DSM 13814] gi|149752804|gb|EDM62735.1| hypothetical protein DORLON_01948 [Dorea longicatena DSM 13814] Length = 311 Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 108/306 (35%), Positives = 176/306 (57%), Gaps = 15/306 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGS--NVIALDRDPFAVSCGQ 75 +H VLL + I LN P + +D T G GG++ C+ +G ++I +D+D A+ Sbjct: 4 EHKSVLLNETIEGLNIKPDGIYVDGTLGGGGHAYEVCRRLGEKGSIIGIDQDEAAIEAAS 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 ++D+ E+ ++ ++ + ++ + + G VDG+V DLGVSS Q+D +RGFS+++ P Sbjct: 64 VRLKDFGEKVTIIRSNYCDMKSKLHELGIDKVDGIVLDLGVSSYQLDTAERGFSYREDAP 123 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM ++A D+VN + DL R++ GE+K A IA IV R + P +TT L Sbjct: 124 LDMRMDRRQKMTARDIVNDYSEMDLYRVIRDYGEDKFAKNIAKHIVAARGTNPIETTGQL 183 Query: 192 SSLIQKTV---YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 + +I+ ++ Y K+ HPA R+FQA+RI +N E++ L L + L GG L ++ Sbjct: 184 TEIIRASIPMKYQKKSG--HPAKRTFQAIRIELNRELDVLKNSLDDMIEILNPGGRLCII 241 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS--ITKKVVVPTQEDVAFNRRS 306 +FHSLEDR+VK F P V + +T+K ++P++E++ +N RS Sbjct: 242 TFHSLEDRIVKSAFKKNENPCTCPPDF-PVCVCGKVSKGCVVTRKPILPSEEELEYNSRS 300 Query: 307 RSAKLR 312 +SAKLR Sbjct: 301 KSAKLR 306 >gi|152976280|ref|YP_001375797.1| S-adenosyl-methyltransferase MraW [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|263446007|sp|A7GRP4|RSMH_BACCN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|152025032|gb|ABS22802.1| S-adenosyl-methyltransferase MraW [Bacillus cytotoxicus NVH 391-98] Length = 310 Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 113/303 (37%), Positives = 172/303 (56%), Gaps = 11/303 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HV VLLE+ + L+ P +D T G GG+S G +IA D+D A+ ++ Sbjct: 4 HVTVLLEETVDGLDIKPNGTYVDCTLGGGGHSSYLLSQLTEGGKLIAFDQDEIAIQNAKD 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 Y EQF ++ F L + + + G VDG++FDLGVSS Q+D +RGFS+ PL Sbjct: 64 KFSSYGEQFIAVKSNFRYLSEKLHELGITEVDGILFDLGVSSPQLDTPERGFSYHHDAPL 123 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM ++A DVVN + + L RI GEEK + +IA I R+ +TT +L Sbjct: 124 DMRMDQEAPLTAYDVVNNWSYEQLVRIFFQYGEEKFSKQIARKIEAYREKKKIETTGELV 183 Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 LI++ + ++ HPA R FQA+RI VN+E++ + L +A + +K GG + V++FH Sbjct: 184 ELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALEAAIEIVKPGGRISVITFH 243 Query: 252 SLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+ K F S + ++ +IP P + + IT+K ++P+ ++ N R+RSA Sbjct: 244 SLEDRICKTTFKRNSTTPELPPGLPIIPEEFKPKL-KLITRKPILPSDVELEENNRARSA 302 Query: 310 KLR 312 KLR Sbjct: 303 KLR 305 >gi|33519608|ref|NP_878440.1| S-adenosyl-methyltransferase MraW [Candidatus Blochmannia floridanus] gi|42559456|sp|Q7VQJ5|RSMH_BLOFL RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|33517271|emb|CAD83655.1| S-adenosyl methionine adenyltransferase; probably methyltransferase [Candidatus Blochmannia floridanus] Length = 321 Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 122/320 (38%), Positives = 178/320 (55%), Gaps = 21/320 (6%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSC 73 I H VLL + I LN P + +D TFG GG+S K+ S+ +IA+DRD AV+ Sbjct: 3 IMHHNSVLLHEAINALNINPSGIYIDGTFGLGGHSHYILSKLTSHGRLIAMDRDWSAVNI 62 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQK 129 G E + +FS+ A FS++ + + ++G++ DLGV Q+ RGFSF + Sbjct: 63 G-EVLTKQDGRFSIIHAPFSKMLRCIYNMNLVGLINGILLDLGVCESQLTDSSRGFSFMR 121 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM S G SA + + +A+ KD+ +L GEEK + +IA +IV +R+ P T Sbjct: 122 DGPLDMRMDNSVGQSAYEWIAKASQKDIEWVLRTFGEEKLSKKIARSIVLKREVYPIDRT 181 Query: 189 QDLSSLIQKTVYFSKNN---RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 LS +I TV + N R HPATRSF A+RI++N E+ E+ + L+ K L GG L Sbjct: 182 SALSEIISDTVLYYNNRYNRRKHPATRSFLAIRIYINEELVEIMKILQDVFKLLAPGGRL 241 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV-------VVPTQE 298 +V+SF+SLEDR+VKKF S +V A IP H + + + + PT Sbjct: 242 VVISFNSLEDRIVKKFINQYS-RVFAYPPKIPL-THTQLLHKYSGTMKFKNLGKIKPTVL 299 Query: 299 DVAFNRRSRSAKLRAGMRTV 318 ++ N R+RSA LR + + Sbjct: 300 EIKKNIRARSAILRYAEKLI 319 >gi|118444716|ref|YP_878007.1| S-adenosyl-methyltransferase MraW [Clostridium novyi NT] gi|263446115|sp|A0Q055|RSMH_CLONN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|118135172|gb|ABK62216.1| S-adenosyl-methyltransferase MraW [Clostridium novyi NT] Length = 309 Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 114/306 (37%), Positives = 166/306 (54%), Gaps = 9/306 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 +HVPVLLE+ I LN + +D T G G+S K S +I +D+D A+ + Sbjct: 4 NHVPVLLEETIDSLNIKEDGIYVDCTLGGAGHSSEILKKLSKKGRLIGIDQDINAIKAAK 63 Query: 76 ETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E ++DY E + F L D + VDG++ DLGVSS Q+D +RGFS+ K Sbjct: 64 ERLKDY-ENVTYVHNNFYNLASILDELNVDKVDGILMDLGVSSYQLDTPERGFSYMKDAM 122 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ +GISA DVVN + DL RI+ GEE+ + +IA AIVK R P +TT +L Sbjct: 123 LDMRMNTENGISAYDVVNGYSEDDLFRIIKDYGEERFSRKIAKAIVKERNEKPVETTLEL 182 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + HPA ++FQA+RI VN+E+E L + + L G + V++FH Sbjct: 183 VKIIKDVIPMKFQQGGHPAKKTFQAIRIEVNHELEILNKTVEDGVNYLNPNGRISVITFH 242 Query: 252 SLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR++K F + I V + +T+K + P + + N RSRS+K Sbjct: 243 SLEDRIIKTKFKELENPCTCPKEFPICVCGKKPVVKVVTRKPIEPNEFERENNSRSRSSK 302 Query: 311 LRAGMR 316 LR + Sbjct: 303 LRVAQK 308 >gi|152979594|ref|YP_001345223.1| S-adenosyl-methyltransferase MraW [Actinobacillus succinogenes 130Z] gi|263446597|sp|A6VQP1|RSMH_ACTSZ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|150841317|gb|ABR75288.1| S-adenosyl-methyltransferase MraW [Actinobacillus succinogenes 130Z] Length = 321 Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 128/314 (40%), Positives = 179/314 (57%), Gaps = 28/314 (8%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQ 75 +H VLL + + L + +D TFG GG+SR ++ N +IA+DRDP A+ Sbjct: 11 EHTTVLLHEAVQGLALKEQGIYIDGTFGRGGHSRLILSRLSPNGRLIAVDRDPLAI-VEA 69 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E ++D + F + +FS + + G VDG++ DLGVSS Q+D RGFSF K G Sbjct: 70 EKIQDPR--FQIEHNSFSAIPEICAKYGLTGKVDGILLDLGVSSPQLDDAQRGFSFMKDG 127 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP------ 184 PLDMRM + G+SAS+ + Q + +DL +L GEE+ A RIA AIV +SA Sbjct: 128 PLDMRMDTTKGLSASEWLAQVSERDLAWVLKTFGEERFAKRIAAAIVNYNKSAVEKNEEI 187 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 T L+ LI V F K+ HPATR+FQA+RIF+N+E++EL L+SA L G Sbjct: 188 LNRTLQLAELISSAVPF-KDKHKHPATRTFQAIRIFLNSELDELESVLQSALTVLAPQGR 246 Query: 245 LIVVSFHSLEDRLVKKFFASRS-----GKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQE 298 L V+SFHSLEDR+VK F +S K + +R I N ++I K + P++ Sbjct: 247 LSVISFHSLEDRMVKHFMRKQSRGEDIPKGLPLREEQIQRN---RTLKTIG-KAIQPSER 302 Query: 299 DVAFNRRSRSAKLR 312 ++A N RSRSA LR Sbjct: 303 EIAVNPRSRSAVLR 316 >gi|289677689|ref|ZP_06498579.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv. syringae FF5] Length = 313 Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 117/305 (38%), Positives = 176/305 (57%), Gaps = 16/305 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H+ VLLE+ + L LD TFG GG+SR ++G + ++ D+DP A++ GQ Sbjct: 7 HITVLLEEAVEALAVRADGCYLDGTFGRGGHSRLILSQLGPDGRLLGFDKDPQAIATGQ- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F + Q +F++L ++G V G++ DLGVSS Q+D +RGFSF GP Sbjct: 66 ALAAEDGRFVIVQRSFAELGSETQERGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDGP 125 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM G+SA++ + A +++ R+ GEE+ A R+A+A+V RR+ PF+ T DL Sbjct: 126 LDMRMDPARGVSAAEFIATAPAEEIARVFKEYGEERFAKRMANAVVARREVQPFERTADL 185 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ K + +PATR+FQ LRI VNNE+ +L GL +A AL+ GG L+V+SFH Sbjct: 186 AEVL-KVANPAWEKGKNPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLVVISFH 244 Query: 252 SLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQ---SITKKVVVPTQEDVAFNRRSR 307 SLEDR+VK F + G+ + +P P F+ I K + + N RSR Sbjct: 245 SLEDRIVKLFMRKLAKGEADNMPRNLPIQYKP--FEPKIKIHGKAQFASDVETKANPRSR 302 Query: 308 SAKLR 312 SA +R Sbjct: 303 SAVMR 307 >gi|26988063|ref|NP_743488.1| S-adenosyl-methyltransferase MraW [Pseudomonas putida KT2440] gi|38258006|sp|Q88N84|RSMH_PSEPK RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|24982787|gb|AAN66952.1|AE016324_2 conserved hypothetical protein TIGR00006 [Pseudomonas putida KT2440] Length = 315 Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 121/307 (39%), Positives = 176/307 (57%), Gaps = 18/307 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMG--SNVIALDRDPFAVSCGQ 75 +H+ VLL++ + L LD TFG GG+SR K+G ++ D+DP A++ GQ Sbjct: 8 NHITVLLDEAVEALALRADGCYLDGTFGRGGHSRLILSKLGPQGRLLGFDKDPQAIATGQ 67 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +F + Q +F++L V +G V GV+ DLGVSS Q+D +RGFSF G Sbjct: 68 -ALAAEDGRFVIVQRSFAELGAEVAARGLHGKVSGVLLDLGVSSPQLDDPERGFSFLNDG 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ G+SA++ + A V+++ R+ GEE+ A R+A A+V+RR+ PF T D Sbjct: 127 PLDMRMNPDQGVSAAEFIATAPVEEIARVFKEYGEERFAGRMARAVVERREKQPFTRTAD 186 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ ++ K + +PATR+FQ LRI VNNE+ +L GL +A AL+ GG L V+SF Sbjct: 187 LAEVL-KVANPAWEKGKNPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLAVISF 245 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITK---KVVVPTQEDVAFNRR 305 HSLEDR+VK F V +P N VF+ K K ++ ++ N R Sbjct: 246 HSLEDRIVKLFMRK---LVKGEADNLPRNLPVQHKVFEPKIKLIGKAQFASEAELKANPR 302 Query: 306 SRSAKLR 312 SRSA +R Sbjct: 303 SRSAVMR 309 >gi|226224647|ref|YP_002758754.1| hypothetical protein Lm4b_02062 [Listeria monocytogenes Clip81459] gi|254854022|ref|ZP_05243370.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL R2-503] gi|254933469|ref|ZP_05266828.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes HPB2262] gi|300765476|ref|ZP_07075457.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL N1-017] gi|263456339|sp|C1KWZ4|RSMH_LISMC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|225877109|emb|CAS05821.1| Hypothetical protein of unknown function [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258607414|gb|EEW20022.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL R2-503] gi|293585031|gb|EFF97063.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes HPB2262] gi|300513787|gb|EFK40853.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL N1-017] gi|332312491|gb|EGJ25586.1| Ribosomal RNA small subunit methyltransferase H [Listeria monocytogenes str. Scott A] Length = 312 Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 108/303 (35%), Positives = 174/303 (57%), Gaps = 11/303 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VLL + + +L P + +DAT G G+S ++ A D+D A+ + Sbjct: 4 HETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDNAKI 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + DY ++ + +A F +++ + ++G VDG+++DLGVSS Q+D +RGFS+ + L Sbjct: 64 KLADYSDKVTFIKANFRDMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQDAAL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM ++A VVN+ + +DL RI GEEK + +IA I +RR+ P +TT +L Sbjct: 124 DMRMDQEQELTAKIVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTGELV 183 Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + ++ HP R+FQA+RI VN+E+ + L A LK GG + V++FH Sbjct: 184 DIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLLKPGGRISVITFH 243 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+ K F A++ + +IP P F+ T+K +VP++E++ N R+RSA Sbjct: 244 SLEDRITKHLFQEATKGPDLPPGLPVIPDEYKPD-FKLATRKPIVPSEEELEQNNRARSA 302 Query: 310 KLR 312 KLR Sbjct: 303 KLR 305 >gi|254819736|ref|ZP_05224737.1| S-adenosyl-methyltransferase MraW [Mycobacterium intracellulare ATCC 13950] Length = 321 Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 114/314 (36%), Positives = 178/314 (56%), Gaps = 18/314 (5%) Query: 21 VPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFA 70 +PVLLE+ +ALL PA G ++DAT GAGG++ F G +I LDRDP A Sbjct: 1 MPVLLERCVALLTPALTRHHPDGTGATLVDATVGAGGHAERFLTELPGLRLIGLDRDPTA 60 Query: 71 VSCGQETMRDYKEQFSLFQATFSQL------QDYVPDKGVDGVVFDLGVSSMQIDCGDRG 124 + + + + ++ +L + + + Y + VDG++FDLGVSSMQ+D +RG Sbjct: 61 LDITRTRLARFSDRVTLVRTRYDGVATALAESGYAATESVDGMLFDLGVSSMQLDRAERG 120 Query: 125 FSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 F++ + PLDMRM ++A+D++N + +L IL GEE+ A RIA IV+RR Sbjct: 121 FAYAQDAPLDMRMDPDAPLTAADILNTYDETELANILHRYGEERFARRIAAHIVRRRARQ 180 Query: 184 PFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 PF +T DL +L+ + + ++ HPA R+FQALR+ VN+E++ L L +A AL G Sbjct: 181 PFASTADLVALLYEAIPAAARRTGGHPAKRTFQALRVAVNDELDSLRAALPAALDALAVG 240 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G ++V+++ SLEDR+VK+ FA V + H F+++T+ ++ Sbjct: 241 GRIVVMTYQSLEDRIVKRLFAEAVASRTPVDLPVELPGHQPRFRALTQGAGRADATEIER 300 Query: 303 NRRSRSAKLRAGMR 316 N RS + +LRA R Sbjct: 301 NPRSAAVRLRALQR 314 >gi|42524595|ref|NP_969975.1| S-adenosyl-methyltransferase [Bdellovibrio bacteriovorus HD100] gi|110826013|sp|P62469|RSMH_BDEBA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|39576805|emb|CAE78034.1| S-adenosyl-methyltransferase [Bdellovibrio bacteriovorus HD100] Length = 328 Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 123/317 (38%), Positives = 181/317 (57%), Gaps = 34/317 (10%) Query: 19 DHVPVLLEKVIALLNPAPGKVIL---DATFGAGGY----SRSFCKMGSNVIALDRDPFAV 71 +H PVLL++V+A P K L D TFG GG+ ++ +M + V +D+D A+ Sbjct: 32 EHYPVLLQEVLAAFYPLRDKKELSYFDGTFGRGGHYMALKYAYPQMKATV--MDQDLAAI 89 Query: 72 SCGQETMRDYKE--QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 + Q + E Q ++ F+Q ++ + D ++ DLGVSS Q+D G+RGFSF Sbjct: 90 AFAQSRFQTEVEKGQLNVIHGNFTQFSEHNLN-NFDMMLLDLGVSSPQLDQGERGFSFYN 148 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM+ G++A ++N A+ +L RI GE + SR+ AIV R++ FQTT Sbjct: 149 DGPLDMRMNQQQGLTAEVLINTASEDELIRIFKEYGEVYRPSRVVRAIVNDRKTKAFQTT 208 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ LI++ + HPAT+ F ALR+ VN+E+E +A+ + +AL GG L V+ Sbjct: 209 GALAGLIERVDGWQVKGH-HPATKYFMALRLAVNSELEVVAEAIPKMIRALNPGGRLAVI 267 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDR+VK F R + + +++TKKV+VPTQE+ N RSRS Sbjct: 268 SFHSLEDRIVKNIF--RESEDLG--------------RTVTKKVIVPTQEECDRNSRSRS 311 Query: 309 AKLRAGMRTVERSIEDD 325 AKL R ERS +D+ Sbjct: 312 AKL----RIFERSAQDE 324 >gi|328472688|gb|EGF43546.1| 16S rRNA m(4)C1402 methyltranserfase [Listeria monocytogenes 220] Length = 315 Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 108/303 (35%), Positives = 174/303 (57%), Gaps = 11/303 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VLL + + +L P + +DAT G G+S ++ A D+D A+ + Sbjct: 4 HETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDNAKI 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + DY ++ + +A F +++ + ++G VDG+++DLGVSS Q+D +RGFS+ + L Sbjct: 64 KLADYSDKVTFIKANFRDMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQDAAL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM ++A VVN+ + +DL RI GEEK + +IA I +RR+ P +TT +L Sbjct: 124 DMRMDQEQELTAKIVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTGELV 183 Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + ++ HP R+FQA+RI VN+E+ + L A LK GG + V++FH Sbjct: 184 DIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLLKPGGRISVITFH 243 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+ K F A++ + +IP P F+ T+K +VP++E++ N R+RSA Sbjct: 244 SLEDRITKHLFQEATKGPDLPPGLPVIPDEYKPD-FKLATRKPIVPSEEELEQNNRARSA 302 Query: 310 KLR 312 KLR Sbjct: 303 KLR 305 >gi|30022007|ref|NP_833638.1| S-adenosyl-methyltransferase MraW [Bacillus cereus ATCC 14579] gi|75762006|ref|ZP_00741921.1| S-adenosyl-methyltransferase mraW [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|206971097|ref|ZP_03232048.1| S-adenosyl-methyltransferase MraW [Bacillus cereus AH1134] gi|218899072|ref|YP_002447483.1| S-adenosyl-methyltransferase MraW [Bacillus cereus G9842] gi|228902424|ref|ZP_04066578.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis IBL 4222] gi|228909744|ref|ZP_04073567.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis IBL 200] gi|228922671|ref|ZP_04085971.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228941007|ref|ZP_04103565.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228954195|ref|ZP_04116223.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228960136|ref|ZP_04121800.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis serovar pakistani str. T13001] gi|228966872|ref|ZP_04127916.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis serovar sotto str. T04001] gi|228973938|ref|ZP_04134513.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980527|ref|ZP_04140837.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis Bt407] gi|229047603|ref|ZP_04193193.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus AH676] gi|229071418|ref|ZP_04204640.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus F65185] gi|229081171|ref|ZP_04213681.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus Rock4-2] gi|229111388|ref|ZP_04240941.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus Rock1-15] gi|229129196|ref|ZP_04258169.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus BDRD-Cer4] gi|229146490|ref|ZP_04274861.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus BDRD-ST24] gi|229152116|ref|ZP_04280311.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus m1550] gi|229180194|ref|ZP_04307538.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus 172560W] gi|229192088|ref|ZP_04319057.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus ATCC 10876] gi|296504412|ref|YP_003666112.1| S-adenosyl-methyltransferase MraW [Bacillus thuringiensis BMB171] gi|33301351|sp|Q819P8|RSMH_BACCR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446850|sp|B7IVF3|RSMH_BACC2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|29897563|gb|AAP10839.1| S-adenosyl-methyltransferase mraW [Bacillus cereus ATCC 14579] gi|74490508|gb|EAO53809.1| S-adenosyl-methyltransferase mraW [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|206733869|gb|EDZ51040.1| S-adenosyl-methyltransferase MraW [Bacillus cereus AH1134] gi|218540802|gb|ACK93196.1| S-adenosyl-methyltransferase MraW [Bacillus cereus G9842] gi|228591414|gb|EEK49264.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus ATCC 10876] gi|228603403|gb|EEK60880.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus 172560W] gi|228631465|gb|EEK88099.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus m1550] gi|228637123|gb|EEK93582.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus BDRD-ST24] gi|228654433|gb|EEL10298.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus BDRD-Cer4] gi|228672164|gb|EEL27455.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus Rock1-15] gi|228702215|gb|EEL54691.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus Rock4-2] gi|228711709|gb|EEL63662.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus F65185] gi|228723850|gb|EEL75205.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus AH676] gi|228779347|gb|EEM27604.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis Bt407] gi|228785804|gb|EEM33808.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228792971|gb|EEM40529.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis serovar sotto str. T04001] gi|228799652|gb|EEM46605.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis serovar pakistani str. T13001] gi|228805515|gb|EEM52106.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228818686|gb|EEM64753.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228837100|gb|EEM82441.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228850033|gb|EEM94864.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis IBL 200] gi|228857168|gb|EEN01674.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis IBL 4222] gi|296325464|gb|ADH08392.1| S-adenosyl-methyltransferase MraW [Bacillus thuringiensis BMB171] gi|326941688|gb|AEA17584.1| S-adenosyl-methyltransferase MraW [Bacillus thuringiensis serovar chinensis CT-43] Length = 310 Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 114/303 (37%), Positives = 173/303 (57%), Gaps = 11/303 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HV VLL++ + L+ P +D T G GG+S G +IA D+D A+ +E Sbjct: 4 HVTVLLKETVDGLDIKPDGTYVDCTLGGGGHSSYLLSQLTEGGKLIAFDQDEIAIQNAKE 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 Y EQF ++ F L + + + G VDG++FDLGVSS Q+D +RGFS+ PL Sbjct: 64 KFSSYGEQFITVKSNFRYLAEKLQEIGITEVDGILFDLGVSSPQLDTPERGFSYHHDAPL 123 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM ++A DVVN + + L RI GEEK + +IA I R++ +TT +L Sbjct: 124 DMRMDQDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTGELV 183 Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 LI++ + ++ HPA R FQA+RI VN+E++ + L SA + +K GG + V++FH Sbjct: 184 ELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRVSVITFH 243 Query: 252 SLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+ K F S + ++ +IP P + + IT+K ++P+ ++ N R+RSA Sbjct: 244 SLEDRICKTTFKRNSTTPQLPPGLPIIPDEFKPKL-KLITRKPILPSDIELEENNRARSA 302 Query: 310 KLR 312 KLR Sbjct: 303 KLR 305 >gi|229075675|ref|ZP_04208657.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus Rock4-18] gi|229098389|ref|ZP_04229334.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus Rock3-29] gi|228685006|gb|EEL38939.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus Rock3-29] gi|228707451|gb|EEL59642.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus Rock4-18] Length = 310 Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 113/303 (37%), Positives = 173/303 (57%), Gaps = 11/303 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HV VLL++ + L+ P +D T G GG+S G +IA D+D A+ +E Sbjct: 4 HVTVLLKETVDGLDIKPDGTYVDCTLGGGGHSSYLLSQLTDGGKLIAFDQDEIAIQNAKE 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 Y EQF ++ F L + + + G VDG++FDLGVSS Q+D +RGFS+ PL Sbjct: 64 KFSSYGEQFITVKSNFRYLSEKLQELGITEVDGILFDLGVSSPQLDTPERGFSYHHDAPL 123 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM ++A DV+N + + L RI GEEK + +IA I R++ +TT +L Sbjct: 124 DMRMDQDAPLTAYDVINSWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTGELV 183 Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 LI++ + ++ HPA R FQA+RI VN+E++ + L SA + +K GG + V++FH Sbjct: 184 ELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRVSVITFH 243 Query: 252 SLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+ K F S + ++ +IP P + + IT+K ++P+ ++ N R+RSA Sbjct: 244 SLEDRICKTTFKRNSTTPQLPPGLPIIPDEFKPKL-KLITRKPILPSDIELEENNRARSA 302 Query: 310 KLR 312 KLR Sbjct: 303 KLR 305 >gi|239813918|ref|YP_002942828.1| S-adenosyl-methyltransferase MraW [Variovorax paradoxus S110] gi|263504487|sp|C5CNE6|RSMH_VARPS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|239800495|gb|ACS17562.1| S-adenosyl-methyltransferase MraW [Variovorax paradoxus S110] Length = 307 Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 131/313 (41%), Positives = 177/313 (56%), Gaps = 16/313 (5%) Query: 15 HTIGDHVPVLL-EKVIALLN--PAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDP 68 +T H VLL E V ALL+ A +DATFG GG++R+ +IA D+D Sbjct: 2 NTPWTHTTVLLNEAVEALLSGSTAATGTYVDATFGRGGHARAILARLAPEGRLIAFDKDA 61 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 AV+ E R +FS+ F L + +PD V GV+ DLGVSS QID RGFSF+ Sbjct: 62 EAVA---EAARISDARFSIRHQGFRSLGE-LPDASVAGVLMDLGVSSPQIDNPVRGFSFR 117 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQ 186 GPLDMRM + G S +D + A ++ + ++ GEE+ A +IA AIV RRQ Sbjct: 118 FDGPLDMRMDTTRGESVADWLATAELQQIAEVIRDYGEERFAVQIAKAIVARRQERGAIS 177 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 TT +L+ L+ TV + + +PATR+FQA RIF+N E+EEL Q L ++ L+ GG L Sbjct: 178 TTSELAELVAGTVKTREPGQ-NPATRTFQAFRIFINAELEELQQALEASLSVLQPGGRLA 236 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+SFHSLEDR+VK+F A S +V R A P + + + P+ +V N RS Sbjct: 237 VISFHSLEDRIVKQFIARHSKEVYDRRAPF---AAPKAMKLRALERIKPSDAEVHGNPRS 293 Query: 307 RSAKLRAGMRTVE 319 RSA LR RT E Sbjct: 294 RSAILRVAERTQE 306 >gi|291457557|ref|ZP_06596947.1| S-adenosyl-methyltransferase MraW [Bifidobacterium breve DSM 20213] gi|291380610|gb|EFE88128.1| S-adenosyl-methyltransferase MraW [Bifidobacterium breve DSM 20213] Length = 350 Score = 187 bits (474), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 119/307 (38%), Positives = 173/307 (56%), Gaps = 15/307 (4%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74 H PVLL+ + L+ PA G V +D T G G+S +F K + +I +DRD A++ Sbjct: 8 HQPVLLDDCVNLVAPALQHEGAVAVDCTLGLAGHSTAFLKAAPQARLIGIDRDSEALALA 67 Query: 75 QETM--RDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQK 129 E M ++F+ A F QL + D+GV D V DLG+SS+QID DRGFS+ Sbjct: 68 TERMVQEGLSDRFTPVHAAFDQLDQVLADQGVERVDAVFMDLGLSSLQIDETDRGFSYSH 127 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM S ++A ++ ++ L R+ GEE+ A +IA IV RR PF TT Sbjct: 128 DAPLDMRMDVSQNLTAERILADYDMASLIRVFREYGEERFARQIAREIVSRRTQTPFTTT 187 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L++L++ V + +PA R FQALRI VN E+++L+ L A L+ GG L+V Sbjct: 188 GQLNALVEDVVPKAHRPAGNPAKRVFQALRIEVNGELDKLSSILPQAANRLQVGGRLVVE 247 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 S+HSLED+ VK F A + K+ A ++ +P +A P F+ +T+ + E+ N RS Sbjct: 248 SYHSLEDKTVKSFMA-QGLKIDAPANLPIVPDDAQP-FFRELTRGAIKADDEERQRNPRS 305 Query: 307 RSAKLRA 313 S +LRA Sbjct: 306 ASVRLRA 312 >gi|256003312|ref|ZP_05428303.1| S-adenosyl-methyltransferase MraW [Clostridium thermocellum DSM 2360] gi|281417697|ref|ZP_06248717.1| S-adenosyl-methyltransferase MraW [Clostridium thermocellum JW20] gi|255992602|gb|EEU02693.1| S-adenosyl-methyltransferase MraW [Clostridium thermocellum DSM 2360] gi|281409099|gb|EFB39357.1| S-adenosyl-methyltransferase MraW [Clostridium thermocellum JW20] gi|316940267|gb|ADU74301.1| S-adenosyl-methyltransferase MraW [Clostridium thermocellum DSM 1313] Length = 313 Score = 187 bits (474), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 113/304 (37%), Positives = 169/304 (55%), Gaps = 11/304 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H PVLLE+ I+ L P V +D T G G+S K +I LD+D FA+ QE Sbjct: 5 HKPVLLEETISNLAIKPDGVYIDGTVGGAGHSGEILKRLDESGTLIGLDQDEFAIKTSQE 64 Query: 77 TMR--DYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + K + L F +++ + VDG++ DLGVSS Q+D RGFS+ K Sbjct: 65 KLAQINSKAKIILVNTNFVNIKEVCQKNNIESVDGILLDLGVSSHQLDEASRGFSYNKDA 124 Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM G ++A +VN+ +++ RI+ GEEK ASRIA IV+ R+ +TT + Sbjct: 125 PLDMRMDRRGELTAKKIVNEYGREEIKRIIRDYGEEKWASRIAEFIVEARKKKEIETTGE 184 Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I+ + S + HPA R+FQALRI VNNE+ LA+ + + LK GG +++ Sbjct: 185 LVDIIKAAIPSSARRGGPHPAKRTFQALRIAVNNELGILAKTIEDGTELLKPGGRFCIIT 244 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK F + + + + + + +K +VP ++++ N R+RS Sbjct: 245 FHSLEDRIVKDEFNKKVNPCICPKQFPVCTCGRKPEGVLVNRKPIVPKEKELEENPRARS 304 Query: 309 AKLR 312 AKLR Sbjct: 305 AKLR 308 >gi|241664315|ref|YP_002982675.1| S-adenosyl-methyltransferase MraW [Ralstonia pickettii 12D] gi|262825232|sp|C6BEJ1|RSMH_RALP1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|240866342|gb|ACS64003.1| S-adenosyl-methyltransferase MraW [Ralstonia pickettii 12D] Length = 319 Score = 187 bits (474), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 119/313 (38%), Positives = 183/313 (58%), Gaps = 21/313 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VLL++ + L + +D TFG GG+SR + G ++A D+DP A++ Sbjct: 11 HQTVLLDEAVDALIWRDDGIYIDGTFGRGGHSRRILERLGPGGRLVAFDKDPAAITEAG- 69 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 T+ D + F++ +F+Q+ + +G++ GV+ DLG+SS QID G+RGFSF+ GPL Sbjct: 70 TVEDAR--FAIEHDSFAQMAQCLDARGIERVAGVLLDLGISSPQIDEGERGFSFRMDGPL 127 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR----QSAPFQTT 188 DMRM + GI+A+ + +A+ +D+ R++ GEE+ A +IA AIV RR P T Sbjct: 128 DMRMDTTRGITAAQWLAEADERDIARVIRDYGEERFAVQIAKAIVARRGQSGDRGPLDRT 187 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L++L+ + V + + PATR+FQALRI VN E+ +L GL++A L+ GG L+V+ Sbjct: 188 SELAALVAQAVKTREKGQ-DPATRTFQALRIHVNQELADLETGLKAAFDRLEQGGRLVVI 246 Query: 249 SFHSLEDRLVKKF---FASRSGKVMAVRHMIPSNAH--PAVFQSITKKVVVPTQEDVAFN 303 SFHSLEDR+VK+F A P AH PA + + V P++ +V+ N Sbjct: 247 SFHSLEDRIVKRFMQALARPEQSAAPELRRAPLRAHELPAPQLRLLGR-VKPSEAEVSAN 305 Query: 304 RRSRSAKLRAGMR 316 R+RSA +R R Sbjct: 306 PRARSAIMRVAER 318 >gi|170696713|ref|ZP_02887828.1| S-adenosyl-methyltransferase MraW [Burkholderia graminis C4D1M] gi|170138376|gb|EDT06589.1| S-adenosyl-methyltransferase MraW [Burkholderia graminis C4D1M] Length = 317 Score = 187 bits (474), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 124/321 (38%), Positives = 188/321 (58%), Gaps = 20/321 (6%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMG--SNVIALD 65 M+SA+ + + H VLLE+ +A L V +D TFG GG+SR K+G +IA D Sbjct: 1 MASAMRNEL-QHRTVLLEEAVAALVTRADGVYVDGTFGRGGHSRLVLEKLGQAGRLIAFD 59 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGD 122 +DP A++ Q+ +F + +F+ L+ + ++G++ GV+ DLGVSS Q+D + Sbjct: 60 KDPLAIATAQQI---GDPRFGIVHESFASLRTAIAERGIERVSGVLLDLGVSSPQVDDPE 116 Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF+ GPLDMRM + G SA+D + +A V++LT ++ GEE+ A +IA A+V RR Sbjct: 117 RGFSFRADGPLDMRMDPTRGESAADWLARATVQELTEVIRDYGEERFAFQIAKALVARRA 176 Query: 182 SA----PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 + P +T +L+ ++ V + + PATR+FQA+RI +N E+ EL L +A Sbjct: 177 ESDRLGPLVSTGELAQIVANVVKTREKGK-DPATRTFQAIRIHINQELAELQVVLEAALS 235 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA--HPAVFQSITKKVVVP 295 L+ GG L+V+SFHSLEDR+VK+F + + AV +P A P+ I +V Sbjct: 236 LLEQGGRLVVISFHSLEDRIVKRFMQAHA-SAPAVDRRLPIRAVDLPSPPLKIIGRVFAS 294 Query: 296 TQEDVAFNRRSRSAKLRAGMR 316 E VA N R+RSA +R R Sbjct: 295 DAE-VAANPRARSAVMRVAER 314 >gi|291542210|emb|CBL15320.1| S-adenosyl-methyltransferase MraW [Ruminococcus bromii L2-63] Length = 307 Score = 187 bits (474), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 115/301 (38%), Positives = 170/301 (56%), Gaps = 11/301 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77 H+PVLLE+ + L + +D T G GG+S +I++D+DP A+ E Sbjct: 5 HIPVLLEQAVDALAVKENGIYVDGTAGGGGHSSEILSRLTTGKLISIDQDPDAILTLTER 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + E + + F+ + + +GV DGV+ D+GVSS Q+D +RGFSF + PLD Sbjct: 65 FKK-NENSIIIKGNFADMVSLLHSRGVGRVDGVLLDIGVSSHQLDTAERGFSFHEDAPLD 123 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRMS SG +A+++VN +L RIL + GEEK A I + IVK R P +TT +L+ + Sbjct: 124 MRMSQSGTTAAELVNTLPAGELRRILSVYGEEKFAVAIVNGIVKARAEKPIETTLELAEI 183 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 I++ V HPA +SFQALRI VN+E+ L +GL A + L +GG L V++FHSLE Sbjct: 184 IKENVPQRVRRDGHPARKSFQALRIAVNDELGVLERGLDGAFELLGSGGRLAVITFHSLE 243 Query: 255 DRLVKKFFASRSGKVMAVRHM---IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 DR+VK+ AS + + N A + + +K V + ++ N R+RSAKL Sbjct: 244 DRIVKQKMASWCQGCTCPKDFPVCVCGNKPKA--KLVVRKPVCANETELRNNPRARSAKL 301 Query: 312 R 312 R Sbjct: 302 R 302 >gi|325134878|gb|EGC57511.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis M13399] Length = 328 Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 117/306 (38%), Positives = 173/306 (56%), Gaps = 10/306 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMG--SNVIALDRDPFAVSCGQE 76 H+ VLL + + L V +D TFG GG+SR ++G +I D+DP A++ +E Sbjct: 9 HITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFDKDPQAIAVAEE 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 R K + + F+ Q + G VDG +FDLG+SS QID G RGFSF+ PL Sbjct: 69 LARSDK-RVGVVHGGFASFQAALDGLGIGKVDGALFDLGISSPQIDDGSRGFSFRFDAPL 127 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + G+SA++ + A+ +DL ++ GEE+ + +IA AIV +R +P TT+ L+ Sbjct: 128 DMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRAESPIDTTRKLA 187 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++ + V + + PATR+FQA+RIF+N E+EE+ L LK GG L V++FHS Sbjct: 188 QIVAQNVRTRERGQ-DPATRTFQAIRIFINRELEEVGAVLPQVMCRLKEGGRLAVIAFHS 246 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK+F S R A P + I + + P + ++A N R+RSA L Sbjct: 247 LEDRIVKQFVKKYSQHAPLPRWAAVREADLPELPLKIVGRALKPGEAEIAANPRARSAVL 306 Query: 312 RAGMRT 317 R RT Sbjct: 307 RVAERT 312 >gi|257784283|ref|YP_003179500.1| S-adenosyl-methyltransferase MraW [Atopobium parvulum DSM 20469] gi|257472790|gb|ACV50909.1| S-adenosyl-methyltransferase MraW [Atopobium parvulum DSM 20469] Length = 327 Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 118/311 (37%), Positives = 175/311 (56%), Gaps = 16/311 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H PV+L +V+ L+P PG+V+ D T G G++ K+ + I +D+D A Sbjct: 14 HQPVMLAEVLRELDPKPGEVVCDCTLGGAGHTVEMAKLIAPDGLSIGIDQDAMAHQAAAA 73 Query: 77 TMRDY--KEQFSLFQATFSQLQDY-----VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 ++ +F + F L + VP GVD +FD+GVSS Q+D +RGFS+ + Sbjct: 74 RLKQEVPNAEFLPLKGNFGDLDELLVSAEVP--GVDCFLFDIGVSSPQLDIPERGFSYHE 131 Query: 130 SGPLDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 PLDMRM +A +V+N N DL RIL I G+EK ASRIA IV+ R+ P QT Sbjct: 132 DAPLDMRMDPGKQTPTAQEVINTYNEADLARILRIYGDEKFASRIARRIVQTREKRPIQT 191 Query: 188 TQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T +L +I+ + ++ + HPA ++FQALRI VN+E+E L +GLRSA GG + Sbjct: 192 TFELVEVIKAAIPAAARRHGGHPARKTFQALRIEVNHELEVLERGLRSAIAWANPGGRIC 251 Query: 247 VVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V+S+HSLEDR+VK F+ S G + + + IT+K +V T E++ N R Sbjct: 252 VISYHSLEDRIVKHVFSELSQGCICPPDLPVCMCGQVPIVDVITRKPLVATPEEIERNPR 311 Query: 306 SRSAKLRAGMR 316 +RSA +R ++ Sbjct: 312 ARSALMRVAVK 322 >gi|225023749|ref|ZP_03712941.1| hypothetical protein EIKCOROL_00613 [Eikenella corrodens ATCC 23834] gi|224943631|gb|EEG24840.1| hypothetical protein EIKCOROL_00613 [Eikenella corrodens ATCC 23834] Length = 318 Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 120/315 (38%), Positives = 177/315 (56%), Gaps = 28/315 (8%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQE 76 HV VLL + + L PG V +D TFG GG+SR K+G+N ++ D+DP A++ ++ Sbjct: 8 HVTVLLHEAVDALEVKPGGVYVDGTFGRGGHSRLILSKLGANGRLVVFDKDPQAIAVARQ 67 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + ++ + FS Q + G VDG +FDLGVSS QID +RGFSF+ PL Sbjct: 68 -LAEVDKRVQVVHGGFSGFQVALKGLGIEAVDGALFDLGVSSPQIDDAERGFSFRYDAPL 126 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + G +A+ + +A +++ ++ GEE+ S+IA AIV++RQ P TT L+ Sbjct: 127 DMRMDTTRGQTAAQWLAEAGEEEIREVIRDYGEERFNSQIARAIVQQRQERPILTTGQLA 186 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 L + V + + PATR+FQA+RIF+N E+EE++ L A LK GG L V++FHS Sbjct: 187 QLAAQAVRTRERGQ-DPATRTFQAIRIFINRELEEISAVLPQAAGYLKTGGRLAVIAFHS 245 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE----------DVAF 302 LEDR+VK+F RH P+ V +++ P +E + A Sbjct: 246 LEDRIVKQFIR---------RHSRPTPLPKWVMVRESERPEPPLREIGKAQRASAAETAA 296 Query: 303 NRRSRSAKLRAGMRT 317 N R+RSA LR RT Sbjct: 297 NPRARSAVLRVAERT 311 >gi|313673691|ref|YP_004051802.1| s-adenosyl-methyltransferase mraw [Calditerrivibrio nitroreducens DSM 19672] gi|312940447|gb|ADR19639.1| S-adenosyl-methyltransferase MraW [Calditerrivibrio nitroreducens DSM 19672] Length = 312 Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 122/307 (39%), Positives = 176/307 (57%), Gaps = 12/307 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H+PVLLE+ + LN G V +D T G GG+S + + + +I LDRDP A C + Sbjct: 9 HIPVLLEEALHYLNVISGGVYVDCTGGGGGHSAAILEKINEGRLIILDRDPDA--CERLF 66 Query: 78 MRDYK--EQFSLFQATFSQLQDYVPDKGV--DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +R +K + FS ++ + G+ +G++ D GVSS QI RGFSF+ PL Sbjct: 67 IR-FKGVPNVDIINDNFSNIEKILDSMGLKANGILADFGVSSFQISNTGRGFSFRYDEPL 125 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + +SA DVVN + + L I+ GE+ A RIA+ IVK R TT++L+ Sbjct: 126 DMRMDKKTDLSAYDVVNNLSQETLENIIKKYGEDPFAKRIAYVIVKYRNLKKITTTKELA 185 Query: 193 SLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I V + + IHPATR+FQA+RIFVN E+E + L+S E L + G + +SFH Sbjct: 186 EIIANAVPVKFHKKGIHPATRTFQAIRIFVNKELEAIESLLKSLENILVSKGRGVFISFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK F + + + I + F+ +TKK V+P++++V N SRSAK Sbjct: 246 SLEDRMVKDFLNYYAKQCICPPGQPICTCGKKQTFKVLTKKPVLPSKDEVIKNPYSRSAK 305 Query: 311 LRAGMRT 317 LRAG R Sbjct: 306 LRAGERV 312 >gi|302036124|ref|YP_003796446.1| s-adenosyl-L-methionine-dependent methyltransferase mraW [Candidatus Nitrospira defluvii] gi|300604188|emb|CBK40520.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Candidatus Nitrospira defluvii] Length = 309 Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 118/301 (39%), Positives = 172/301 (57%), Gaps = 20/301 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFG-AGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76 H PVL+E+++ L PG V +D T G AG +R + + ++ +DRD A++ + Sbjct: 10 HEPVLVEEILFWLQCKPGGVYVDCTLGYAGLAARLLDRTAPDGILVGIDRDAAALAESRM 69 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +R+ + F L+ + GV DGV+FDLGVSS Q+D +RGFSF++ GPL Sbjct: 70 RLREVAHRVHFRHGNFCDLKALIIGSGVSRVDGVIFDLGVSSPQLDRAERGFSFREDGPL 129 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM G +A+D+V +L ++ LGEE+ + RIA AIV+ R TT L+ Sbjct: 130 DMRMDQREGRTAADLVRDLPETELADLIYQLGEERYSRRIARAIVQARMQGVIATTWQLA 189 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +++++ V S ++ RIH ATR+FQALRI VN E++ L LR A L GG + VSFH Sbjct: 190 AVVERAVPASYRHGRIHCATRTFQALRIAVNRELDVLEPALRDAVDILAPGGRVCAVSFH 249 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+VK F + +N A + +TKK V+ ++ + N RSRSAKL Sbjct: 250 SLEDRIVKHTFRA------------LANGPEASVRVLTKKPVIASENERNRNPRSRSAKL 297 Query: 312 R 312 R Sbjct: 298 R 298 >gi|309379057|emb|CBX22359.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 319 Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 122/306 (39%), Positives = 170/306 (55%), Gaps = 10/306 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMG--SNVIALDRDPFAVSCGQE 76 H+ VLL + + L V +D TFG GG+SR ++G ++ D+DP AV+ +E Sbjct: 9 HITVLLHEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLVVFDKDPRAVAAAEE 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 R K + S+ F+ Q + D G VDG +FDLGVSS QID RGFSF+ PL Sbjct: 69 LARSDK-RVSVVHGGFASFQTALDDLGIGDVDGALFDLGVSSPQIDDAARGFSFRFDAPL 127 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + G+SA++ + A+ +DL ++ GEE+ + +IA AIV +R P TT+ L+ Sbjct: 128 DMRMDTTRGMSAAEWIASASEQDLHEVIKNYGEERFSRQIARAIVAQRAENPIDTTRKLA 187 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 L + V + + PATR+FQA+RIF+N E+EE+ L LK GG L V++FHS Sbjct: 188 QLAAQNVRTRERGQ-DPATRTFQAVRIFINRELEEVEAVLPQVMCRLKQGGRLAVIAFHS 246 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK+F S R A P I K + P +VA N R+RSA L Sbjct: 247 LEDRIVKQFVGKYSRHAPLPRWAAVREADLPEPPLKIVGKALKPGGAEVAANPRARSAVL 306 Query: 312 RAGMRT 317 R RT Sbjct: 307 RVAERT 312 >gi|295399706|ref|ZP_06809687.1| S-adenosyl-methyltransferase MraW [Geobacillus thermoglucosidasius C56-YS93] gi|312111775|ref|YP_003990091.1| S-adenosyl-methyltransferase MraW [Geobacillus sp. Y4.1MC1] gi|294978109|gb|EFG53706.1| S-adenosyl-methyltransferase MraW [Geobacillus thermoglucosidasius C56-YS93] gi|311216876|gb|ADP75480.1| S-adenosyl-methyltransferase MraW [Geobacillus sp. Y4.1MC1] Length = 310 Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 111/303 (36%), Positives = 177/303 (58%), Gaps = 11/303 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H VLL++ + L+ P +D T G GG+S S + A D+D A+ ++ Sbjct: 4 HTTVLLKEAVDGLHINPDGTYVDCTLGGGGHSEYLLSQLSEKGRLFAFDQDDMAIEYAKK 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + Y++Q + + F L + + +GV DG++FDLGVSS Q+D +RGFS+ PL Sbjct: 64 RLARYEKQVTFIRRNFRFLAEELAARGVHKVDGILFDLGVSSPQLDTPERGFSYHHDAPL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ ++A D+VN + L I GEEK + ++A I + R+ +TT +L Sbjct: 124 DMRMNREQPLTAYDIVNHWPYEKLVHIFFHYGEEKFSKQVARKIEEVRKEKRIETTGELV 183 Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++I++ + ++ + HPA R FQA+RI VN+E++ + + A LK+GG + V++FH Sbjct: 184 NIIKEAIPAPARRSGGHPAKRIFQAIRIAVNDELQAFQEAITQAIDVLKSGGRISVITFH 243 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+ K F AS+S ++ +IP P + + ITKK +VP++E+VA N R+RSA Sbjct: 244 SLEDRICKATFKKASQSPQLPPGLPLIPEQYRPTL-KMITKKPIVPSEEEVAHNHRARSA 302 Query: 310 KLR 312 KLR Sbjct: 303 KLR 305 >gi|226948790|ref|YP_002803881.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum A2 str. Kyoto] gi|263446084|sp|C1FME6|RSMH_CLOBJ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|226843346|gb|ACO86012.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum A2 str. Kyoto] Length = 309 Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 117/302 (38%), Positives = 169/302 (55%), Gaps = 9/302 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+ VLLE+ I LN V +D T G GG+S+ K S+ +I +D+D A+ +E Sbjct: 5 HISVLLEETIDSLNIKEDGVYVDCTLGGGGHSKEILKKLSHKGKLIGIDQDTSAIKAAKE 64 Query: 77 TMRDYKEQFSL---FQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++DY+ + F S L++ DK VDG++ DLGVSS Q+D RGFS+ K PL Sbjct: 65 RLKDYENVIYVHNNFYNIDSILEELDIDK-VDGIIMDLGVSSYQLDEASRGFSYMKDAPL 123 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +SA +VVN ++L +IL GEEK + +IA IV++R P +TT +L Sbjct: 124 DMRMNREENLSAYNVVNSYEEEELFKILKNYGEEKFSRKIARFIVEKRTENPIETTGELV 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+K + HPA R+FQA+RI VN E++ L + + + L G L +++FHS Sbjct: 184 EIIRKAIPAKFQREGHPAKRTFQAIRIEVNKELQILNKAIEDSVNRLNKDGRLSIITFHS 243 Query: 253 LEDRLVK-KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK KF I + ITKK + P++E+ N RSRSAKL Sbjct: 244 LEDRIVKVKFKELEKPCTCPPSFPICVCGKEPQIKIITKKPIEPSKEEKEINSRSRSAKL 303 Query: 312 RA 313 R Sbjct: 304 RV 305 >gi|222112157|ref|YP_002554421.1| s-adenosyl-methyltransferase mraw [Acidovorax ebreus TPSY] gi|263447303|sp|B9MFS0|RSMH_ACIET RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|221731601|gb|ACM34421.1| S-adenosyl-methyltransferase MraW [Acidovorax ebreus TPSY] Length = 308 Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 122/306 (39%), Positives = 178/306 (58%), Gaps = 16/306 (5%) Query: 20 HVPVLLEKVI-ALLNP--APGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSC 73 H VLL++ + ALL AP +D TFG GG+SR ++G ++A D+D A+ Sbjct: 7 HTTVLLDEAVHALLGDGDAPAGTFVDGTFGRGGHSRLILQRLGPQGRLVAFDKDTEAI-- 64 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 Q R +FS+ FS L + +P V GV+ DLGVSS QID RGFSF+ GPL Sbjct: 65 -QAAARITDARFSIRHQGFSHLGE-LPAASVSGVLLDLGVSSPQIDDPQRGFSFRFDGPL 122 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR-QSAPFQTTQDL 191 DMRM + G S ++ + A + ++ GEE+ A IA AIV RR + P +T +L Sbjct: 123 DMRMDTTRGQSVAEWLADAEAAQIAEVIRDYGEERFAGPIAKAIVARRTERGPISSTAEL 182 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ V + + +PATR+FQALRIF+N E+EEL Q L + + L+ GG L+V+SFH Sbjct: 183 ADIVAGAVKTREPGQ-NPATRTFQALRIFINAELEELQQALEGSLRVLRPGGRLVVISFH 241 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+VK+F A S +V R + P +++ + + P+ ++VA N R+RSA + Sbjct: 242 SLEDRIVKQFIAQHSKEVYDRRAPF-APPQPMRLKALER--IKPSTDEVAANARARSAVM 298 Query: 312 RAGMRT 317 R RT Sbjct: 299 RVAERT 304 >gi|172057976|ref|YP_001814436.1| S-adenosyl-methyltransferase MraW [Exiguobacterium sibiricum 255-15] gi|263447041|sp|B1YIU3|RSMH_EXIS2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|171990497|gb|ACB61419.1| S-adenosyl-methyltransferase MraW [Exiguobacterium sibiricum 255-15] Length = 312 Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 116/303 (38%), Positives = 174/303 (57%), Gaps = 10/303 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76 +H VL + I LN P + +D T G G+S K ++ A D+D A++ E Sbjct: 3 EHETVLKWESIKGLNIKPDGIYVDCTLGGAGHSEEIVKQLTTGHLYAFDQDDVALAHAAE 62 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + Y+ +F+L ++ F L++ + + V DG++FDLGVSS Q+D G+RGFS+ L Sbjct: 63 RLAAYEGRFTLIKSNFVHLKEELEARSVTKVDGILFDLGVSSPQLDEGERGFSYNFDARL 122 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S +SA +VVN+ DL RIL GEEK + +IA I K R+ AP +TT +L Sbjct: 123 DMRMDQTSPLSAYEVVNEWPYNDLVRILFTYGEEKFSKQIARKIEKAREIAPIETTFELV 182 Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 LI+ + ++ HPA R+FQA+RI VN+E+ + + A L GG L V++FH Sbjct: 183 ELIKDAIPAPARRKGGHPAKRTFQAIRIAVNDELNVFDRAVYQAIDLLAVGGRLCVITFH 242 Query: 252 SLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+ K+ F +S ++ MIP P + + +T+K + +++ NRRSRSA Sbjct: 243 SLEDRMCKQAFKEKSSLPELPQGLPMIPKEFEPEL-RLVTRKPITAGDDELDDNRRSRSA 301 Query: 310 KLR 312 KLR Sbjct: 302 KLR 304 >gi|325142966|gb|EGC65323.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis 961-5945] Length = 328 Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 117/306 (38%), Positives = 173/306 (56%), Gaps = 10/306 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMG--SNVIALDRDPFAVSCGQE 76 H+ VLL + + L V +D TFG GG+SR ++G +I D+DP A++ +E Sbjct: 9 HITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFDKDPQAIAVAEE 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 R K + + F+ Q + G VDG +FDLG+SS QID G RGFSF+ PL Sbjct: 69 LARSDK-RVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGSRGFSFRFDAPL 127 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + G+SA++ + A+ +DL ++ GEE+ + +IA AIV +R +P TT+ L+ Sbjct: 128 DMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRAESPIDTTRKLA 187 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++ + V + + PATR+FQA+RIF+N E+EE+ L LK GG L V++FHS Sbjct: 188 QIVAQNVRTRERGQ-DPATRTFQAVRIFINRELEEVGAVLPQVMCRLKEGGRLAVIAFHS 246 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK+F S R A P + I + + P + ++A N R+RSA L Sbjct: 247 LEDRIVKQFVKKYSQHAPLPRWAAVREADLPELPLKIVGRALKPGEAEIAANPRARSAVL 306 Query: 312 RAGMRT 317 R RT Sbjct: 307 RVAERT 312 >gi|332712413|ref|ZP_08432340.1| S-adenosyl-methyltransferase MraW [Lyngbya majuscula 3L] gi|332348887|gb|EGJ28500.1| S-adenosyl-methyltransferase MraW [Lyngbya majuscula 3L] Length = 304 Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 118/301 (39%), Positives = 166/301 (55%), Gaps = 22/301 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 HV VL +++I L PG LDAT G GG++ +V A+DRD A++ + Sbjct: 15 HVSVLSQELIEGLAICPGGHYLDATVGGGGHTELILAAAPDVEVTAIDRDANAIAAAKTR 74 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 + Y + + +Q F++ Q D+ DG++ DLGVSS Q+D +RGFSF+ + LDMRM Sbjct: 75 LASYNGRVNFWQGNFAEYQPN--DRVFDGIIADLGVSSAQLDLPERGFSFRHAAQLDMRM 132 Query: 138 SCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 S ++A D++N L + GEE+ + R+A IV++R PFQTT +L++ I Sbjct: 133 DQSQSLTAKDIINNWGEVRLADVFYKYGEERLSRRMARRIVEKR---PFQTTTELANAIA 189 Query: 197 KTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 V + RIHPATR FQALRI VN E+E L L A LK GG L ++SFHSLED Sbjct: 190 SCVPPKYRYGRIHPATRVFQALRIVVNQELESLESFLDIAPHWLKPGGRLGIISFHSLED 249 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 R+VK F S ++ + +TKK V E++ N R+RSAKLR Sbjct: 250 RIVKHKFRELSTNC-------------SLLRVLTKKPTVAQAEEIQHNPRARSAKLRFAE 296 Query: 316 R 316 R Sbjct: 297 R 297 >gi|229117415|ref|ZP_04246791.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus Rock1-3] gi|228666025|gb|EEL21491.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus Rock1-3] Length = 310 Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 113/303 (37%), Positives = 173/303 (57%), Gaps = 11/303 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HV VLL++ + L+ P +D T G GG+S G +IA D+D A+ +E Sbjct: 4 HVTVLLKETVDGLDIKPDGTYVDCTLGGGGHSSYLLSQLTDGGKLIAFDQDEIAIQNAKE 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 Y EQF ++ F L + + + G VDG++FDLGVSS Q+D +RGFS+ PL Sbjct: 64 KFSSYGEQFITVKSNFRYLSEKLQELGITEVDGILFDLGVSSPQLDTPERGFSYHHDAPL 123 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM ++A DV+N + + L RI GEEK + +IA I R++ +TT +L Sbjct: 124 DMRMDQDAPLTAYDVINSWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTGELV 183 Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 LI++ + ++ HPA R FQA+RI VN+E++ + L SA + +K GG + V++FH Sbjct: 184 ELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIELVKPGGRVSVITFH 243 Query: 252 SLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+ K F S + ++ +IP P + + IT+K ++P+ ++ N R+RSA Sbjct: 244 SLEDRICKTTFKRNSTTPQLPPGLPIIPDEFKPKL-KLITRKPILPSDIELEENNRARSA 302 Query: 310 KLR 312 KLR Sbjct: 303 KLR 305 >gi|125973496|ref|YP_001037406.1| S-adenosyl-methyltransferase MraW [Clostridium thermocellum ATCC 27405] gi|263446119|sp|A3DE34|RSMH_CLOTH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|125713721|gb|ABN52213.1| S-adenosyl-methyltransferase MraW [Clostridium thermocellum ATCC 27405] Length = 313 Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 113/304 (37%), Positives = 169/304 (55%), Gaps = 11/304 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H PVLLE+ I+ L P V +D T G G+S K +I LD+D FA+ QE Sbjct: 5 HKPVLLEETISNLAIKPDGVYIDGTVGGAGHSGEILKRLDESGTLIGLDQDEFAIKTSQE 64 Query: 77 TMR--DYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + K + L F +++ + VDG++ DLGVSS Q+D RGFS+ K Sbjct: 65 KLVQINSKAKIILVNTNFVNIKEVCQKNNIESVDGILLDLGVSSHQLDEASRGFSYNKDA 124 Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM G ++A +VN+ +++ RI+ GEEK ASRIA IV+ R+ +TT + Sbjct: 125 PLDMRMDRRGELTAKKIVNEYGREEIKRIIRDYGEEKWASRIAEFIVEARKKKEIETTGE 184 Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I+ + S + HPA R+FQALRI VNNE+ LA+ + + LK GG +++ Sbjct: 185 LVDIIKAAIPSSARRGGPHPAKRTFQALRIAVNNELGILAKTIEDGTELLKPGGRFCIIT 244 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK F + + + + + + +K +VP ++++ N R+RS Sbjct: 245 FHSLEDRIVKDEFNKKVNPCICPKQFPVCTCGRKPEGVLVNRKPIVPKEKELEENPRARS 304 Query: 309 AKLR 312 AKLR Sbjct: 305 AKLR 308 >gi|317501224|ref|ZP_07959429.1| S-adenosyl-L-methionine-dependent methyltransferase mraW 2 [Lachnospiraceae bacterium 8_1_57FAA] gi|331090030|ref|ZP_08338919.1| ribosomal RNA small subunit methyltransferase H 2 [Lachnospiraceae bacterium 3_1_46FAA] gi|316897400|gb|EFV19466.1| S-adenosyl-L-methionine-dependent methyltransferase mraW 2 [Lachnospiraceae bacterium 8_1_57FAA] gi|330402492|gb|EGG82061.1| ribosomal RNA small subunit methyltransferase H 2 [Lachnospiraceae bacterium 3_1_46FAA] Length = 311 Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 109/304 (35%), Positives = 175/304 (57%), Gaps = 11/304 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQ 75 +HV VLL + + LN P V +DAT G GG++ C+ +GS I +D+D A+ Sbjct: 4 EHVSVLLNETVDGLNVKPDGVYVDATLGGGGHAYEVCRRLGSKGRFIGIDQDADAIKAAG 63 Query: 76 ETMRDYKEQFSLFQATF----SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E ++ + E+ ++ ++ + QLQ+ DK VDG+V DLGVSS Q+D +RGFS++ Sbjct: 64 ERLKGFGEKVTIIRSNYRDMKPQLQNIGVDK-VDGIVIDLGVSSYQLDTAERGFSYRVDA 122 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM ++A D+VN+ + +L R++ GE+K A IA IV+ R+ P +TT Sbjct: 123 PLDMRMDQRQKMTARDIVNEYSESELYRVIRDYGEDKFAKNIAKHIVEERRKNPIETTGQ 182 Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I + + HP+ R+FQA+RI +N+E++ L + L + L GG + +++ Sbjct: 183 LNEIISHAIPMKFRKTSGHPSKRTFQAIRIELNHELDVLRESLDDMIEMLNPGGRICIIT 242 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK F H + + + IT+K ++P++ + N RS+S Sbjct: 243 FHSLEDRIVKSAFRKNENPCTCPSHFPVCVCGKISKGKVITRKPILPSEAETESNSRSKS 302 Query: 309 AKLR 312 AKLR Sbjct: 303 AKLR 306 >gi|330957978|gb|EGH58238.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv. maculicola str. ES4326] Length = 313 Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 117/305 (38%), Positives = 175/305 (57%), Gaps = 16/305 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76 H+ VLLE+ + L LD TFG GG+SR S ++ D+DP A++ GQ Sbjct: 7 HITVLLEEAVEALAVRADGCYLDGTFGRGGHSRLILSHLGPDGRLLGFDKDPQAIATGQ- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F + Q +F++L V ++G V G++ DLGVSS Q+D +RGFSF GP Sbjct: 66 ALAAEDGRFVIVQRSFAELGSEVQERGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDGP 125 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G+SA++ + A +++ R+ GEE+ A R+A+A+V+RR+ PF+ T DL Sbjct: 126 LDMRMDPTRGVSAAEFIASAPAEEIARVFKEYGEERFAKRMANAVVQRREIQPFERTADL 185 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ K + +PATR+FQ LRI VNNE+ +L GL +A L+ GG L+V+SFH Sbjct: 186 AEVL-KVANPAWEKGKNPATRAFQGLRIHVNNELGDLEAGLEAALDTLEIGGRLVVISFH 244 Query: 252 SLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQ---SITKKVVVPTQEDVAFNRRSR 307 SLEDR+VK F + G+ + +P P F+ I K + + N RSR Sbjct: 245 SLEDRIVKLFMRKLAKGEADNMPRDLPIQFKP--FEPKIKIHGKAQFASDAETKANPRSR 302 Query: 308 SAKLR 312 SA +R Sbjct: 303 SAVMR 307 >gi|229541208|ref|ZP_04430268.1| S-adenosyl-methyltransferase MraW [Bacillus coagulans 36D1] gi|229325628|gb|EEN91303.1| S-adenosyl-methyltransferase MraW [Bacillus coagulans 36D1] Length = 309 Score = 186 bits (473), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 113/302 (37%), Positives = 170/302 (56%), Gaps = 10/302 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77 H VLL++ + L+ P + +D T G GG+S + G ++ A D+D A+ +E Sbjct: 4 HKTVLLKETVDGLHIKPDGIYVDCTLGGGGHSAYLLQQLTGGHLYAFDQDETAIQHAKEK 63 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + + + ++ F L+ + +GV DG+++DLGVSS Q+D +RGFS+Q PLD Sbjct: 64 FAHDQNRITFIKSNFRYLKSELNARGVQAVDGILYDLGVSSPQLDTPERGFSYQHDAPLD 123 Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM + ++A +VVN+ + L RI GEEK + +IA I R P +TT +L+ Sbjct: 124 MRMDLDTPLTAYEVVNEWPYEKLVRIFFRYGEEKFSKQIARKIEASRAKKPIETTGELAD 183 Query: 194 LIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 LI++ + ++ HPA R FQA+RI VN+E+ L A LK GG + V++FHS Sbjct: 184 LIKEAIPAPARRKGGHPAKRVFQAIRIAVNDELSAFETSLTDAISLLKPGGRVSVITFHS 243 Query: 253 LEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 LEDR+ K S +G + +IP P V + IT+K +VP E+V N RSRSAK Sbjct: 244 LEDRICKNILKEYSSAGDLPHGLPVIPKEYEP-VLKLITRKPIVPNDEEVGENNRSRSAK 302 Query: 311 LR 312 LR Sbjct: 303 LR 304 >gi|254805557|ref|YP_003083778.1| S-adenosyl-methyltransferase [Neisseria meningitidis alpha14] gi|254669099|emb|CBA07673.1| S-adenosyl-methyltransferase [Neisseria meningitidis alpha14] Length = 328 Score = 186 bits (473), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 117/306 (38%), Positives = 173/306 (56%), Gaps = 10/306 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMG--SNVIALDRDPFAVSCGQE 76 H+ VLL + + L V +D TFG GG+SR ++G +I D+DP A++ +E Sbjct: 9 HITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFDKDPQAIAVAEE 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 R K + + F+ Q + G VDG +FDLG+SS QID G RGFSF+ PL Sbjct: 69 LARSDK-RVGVVHGGFASFQAALDGLGIGKVDGALFDLGISSPQIDDGSRGFSFRFDAPL 127 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + G+SA++ + A+ +DL ++ GEE+ + +IA AIV +R +P TT+ L+ Sbjct: 128 DMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRAESPIDTTRKLA 187 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++ + V + + PATR+FQA+RIF+N E+EE+ L LK GG L V++FHS Sbjct: 188 QIVAQNVRTRERGQ-DPATRTFQAVRIFINRELEEVGAVLPQVMCRLKEGGRLAVIAFHS 246 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK+F S R A P + I + + P + ++A N R+RSA L Sbjct: 247 LEDRIVKQFVKKYSQHAPLPRWAAVREADLPELPLKIVGRALKPGEAEIAANPRARSAVL 306 Query: 312 RAGMRT 317 R RT Sbjct: 307 RVAERT 312 >gi|121635455|ref|YP_975700.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis FAM18] gi|262825519|sp|A1KVM4|RSMH_NEIMF RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|120867161|emb|CAM10928.1| conserved hypothetical protein [Neisseria meningitidis FAM18] gi|325132957|gb|EGC55634.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis M6190] gi|325138945|gb|EGC61495.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis ES14902] gi|325144950|gb|EGC67233.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis M01-240013] Length = 328 Score = 186 bits (473), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 117/306 (38%), Positives = 173/306 (56%), Gaps = 10/306 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMG--SNVIALDRDPFAVSCGQE 76 H+ VLL + + L V +D TFG GG+SR ++G +I D+DP A++ +E Sbjct: 9 HITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFDKDPQAIAVAEE 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 R K + + F+ Q + G VDG +FDLG+SS QID G RGFSF+ PL Sbjct: 69 LARSDK-RVGVVHGGFASFQAALDGLGIGKVDGALFDLGISSPQIDDGSRGFSFRFDAPL 127 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + G+SA++ + A+ +DL ++ GEE+ + +IA AIV +R +P TT+ L+ Sbjct: 128 DMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRAESPIDTTRKLA 187 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++ + V + + PATR+FQA+RIF+N E+EE+ L LK GG L V++FHS Sbjct: 188 QIVAQNVRTRERGQ-DPATRTFQAVRIFINRELEEVGAVLPQVMCRLKEGGRLAVIAFHS 246 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK+F S R A P + I + + P + ++A N R+RSA L Sbjct: 247 LEDRIVKQFVKKYSQHAPLPRWAAVREADLPELPLKIVGRALKPGEAEIAANPRARSAVL 306 Query: 312 RAGMRT 317 R RT Sbjct: 307 RVAERT 312 >gi|296133667|ref|YP_003640914.1| S-adenosyl-methyltransferase MraW [Thermincola sp. JR] gi|296032245|gb|ADG83013.1| S-adenosyl-methyltransferase MraW [Thermincola potens JR] Length = 319 Score = 186 bits (473), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 112/313 (35%), Positives = 177/313 (56%), Gaps = 9/313 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HVPV+L++ I+ LN P + +D T G G+S K ++ +D+D A++ G++ Sbjct: 5 HVPVMLDESISHLNIKPDGIYVDCTLGGAGHSAEILKKIQPNGFLVGIDQDINAIAAGEK 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +++ + L + F++++D + + G VDGV+FDLGVSS Q+D RGFS++ PL Sbjct: 65 RLKNIGSNYRLVHSNFNRIRDILEELGIYRVDGVLFDLGVSSYQLDQIQRGFSYKVDAPL 124 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ ++A +VN +L +I+ GEE+ A RIA IV+ R TT L Sbjct: 125 DMRMNPLEPVTARILVNGLTEDELAKIISEYGEERWARRIAKFIVEARAREEISTTGQLV 184 Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ V ++ HPA R+FQALRI VN+E+ + LR A + L GG + V+SFH Sbjct: 185 EIIKNAVPAGARKEGPHPAKRTFQALRIAVNDELNKFKSALRDAIEVLAPGGRICVISFH 244 Query: 252 SLEDRLVKKFFASRSGK-VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+ K+ F + + V + + + + IT K + P+ ++ N R+RSAK Sbjct: 245 SLEDRITKEMFRDLAKECVCPPEFPVCTCGTVPMLKIITNKPIEPSAAEIERNPRARSAK 304 Query: 311 LRAGMRTVERSIE 323 LR R V ++ E Sbjct: 305 LRVAERLVLKNGE 317 >gi|317182020|dbj|BAJ59804.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori F57] Length = 308 Score = 186 bits (473), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 117/303 (38%), Positives = 178/303 (58%), Gaps = 18/303 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVSCGQET 77 H VLL++V+ P V++D T G GG+S++ K +I +D+D FA +E Sbjct: 8 HQSVLLQEVLQAFVPLEEGVLIDCTLGLGGHSKAILSQKPHLKLIGIDKDKFAQEIAKER 67 Query: 78 MRDYKEQFSLFQATFSQ-----LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 ++ ++ +++L F++ L+ + DK + GV+ DLGVSS+Q+D +RGF+F S Sbjct: 68 LKAFEGRYNLLSGGFAKRFKEALETH--DKEIKGVLVDLGVSSLQLDDDNRGFNFH-SHA 124 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S ++A V+N + L +I GE K+ +IAH I +RR PF+ +DL Sbjct: 125 LDMRMDLESDLNAQKVINYYPIVALEKIFRDYGEIKEYKKIAHKIAERRAKKPFKDAKDL 184 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 S + SKN +IHPAT FQA+RI VN E+EEL + L+ A + LK G +L V+SFH Sbjct: 185 SDFLSS---LSKNKKIHPATLVFQAVRIEVNRELEELKEFLQCA-RNLK-GAILCVISFH 239 Query: 252 SLEDRLVKKFFASRSGKVMA--VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLED LVK F + + + + + A+ + +TKK + P+ E++ NRRSRSA Sbjct: 240 SLEDALVKNAFKDYAKNCICDPLSFKCTCSNNYALGEILTKKPITPSPEEIKNNRRSRSA 299 Query: 310 KLR 312 K+R Sbjct: 300 KMR 302 >gi|317495032|ref|ZP_07953404.1| MraW methylase [Gemella moribillum M424] gi|316914804|gb|EFV36278.1| MraW methylase [Gemella moribillum M424] Length = 312 Score = 186 bits (473), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 113/306 (36%), Positives = 171/306 (55%), Gaps = 18/306 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H VLL + +A LN V +D T G G+S K ++ + A D+D A+ ++ Sbjct: 4 HYSVLLNEAVAGLNIKENGVYVDCTLGGAGHSLEILKQLTDGKLYAFDQDSVALENAKDK 63 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++DY ++ ++ F L++ + + GV DGV++DLGVSS Q+D +RGFS+ LD Sbjct: 64 LKDYADKVVFIKSNFKNLREKLLEHGVTEVDGVLYDLGVSSPQLDTPERGFSYNYDTRLD 123 Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM ISA ++VN+ + +L +I GEEK + +IA + K+R P +TT +L Sbjct: 124 MRMDTDAKISAYEIVNEYDYNELVKIFYRYGEEKFSKQIARNVEKKRLEKPIETTFELVD 183 Query: 194 LIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I++++ +K HPA R FQA+RI VNNE+ L A +K G + V++FHS Sbjct: 184 IIKESIPAAKRRTGGHPAKRVFQAIRIAVNNELSVFEDSLEQAIDIVKKDGRISVITFHS 243 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSN------AHPAVFQSITKKVVVPTQEDVAFNRRS 306 LEDR+ K+ F S A R IP N A + IT+K + PT +++ N RS Sbjct: 244 LEDRICKQIFNS-----YAKRKEIPKNLPILPEESLAKLKIITRKPIYPTDKELEENNRS 298 Query: 307 RSAKLR 312 RSAKLR Sbjct: 299 RSAKLR 304 >gi|296313573|ref|ZP_06863514.1| S-adenosyl-methyltransferase MraW [Neisseria polysaccharea ATCC 43768] gi|296839874|gb|EFH23812.1| S-adenosyl-methyltransferase MraW [Neisseria polysaccharea ATCC 43768] Length = 319 Score = 186 bits (473), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 117/306 (38%), Positives = 172/306 (56%), Gaps = 10/306 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMG--SNVIALDRDPFAVSCGQE 76 H+ VLL + + L + +D TFG GG+SR ++G +I D+DP A++ +E Sbjct: 9 HITVLLNEAVDALAVREDGIYVDGTFGRGGHSRLILSRLGDAGRLIVFDKDPQAIAVAEE 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 R K + + F Q + D G VDG +FDLG+SS QID G RGFSF+ PL Sbjct: 69 LARSDK-RVGVVHGGFVSFQTALDDLGIGKVDGALFDLGISSPQIDDGSRGFSFRFDAPL 127 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + G+SA++ + A+ +DL ++ GEE+ + +IA AIV +R +P TT+ L+ Sbjct: 128 DMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRAESPIDTTRKLA 187 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++ + V + + PATR+FQA+RIF+N E+EE+ L LK GG L V++FHS Sbjct: 188 QIVAQNVRTRERGQ-DPATRTFQAVRIFINRELEEVGAVLPQVMCRLKQGGRLAVIAFHS 246 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK+F S R A P I + + P + ++A N R+RSA L Sbjct: 247 LEDRIVKQFVKKYSQHAPLPRWAAVREADLPEPPLKIVGRALKPGEAEIAANPRARSAVL 306 Query: 312 RAGMRT 317 R RT Sbjct: 307 RVAERT 312 >gi|313500445|gb|ADR61811.1| MraW [Pseudomonas putida BIRD-1] Length = 315 Score = 186 bits (473), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 121/305 (39%), Positives = 176/305 (57%), Gaps = 14/305 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMG--SNVIALDRDPFAVSCGQ 75 +H+ VLL++ + L LD TFG GG+SR K+G ++ D+DP A++ GQ Sbjct: 8 NHITVLLDEAVEALALRADGCYLDGTFGRGGHSRLILSKLGPQGRLLGFDKDPQAIATGQ 67 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +F + Q +F++L V +G V GV+ DLGVSS Q+D +RGFSF G Sbjct: 68 -ALAAEDGRFVIVQRSFAELGAEVAARGLHGKVSGVLLDLGVSSPQLDDPERGFSFLNDG 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ GISA++ + A V+++ R+ GEE+ A R+A A+V+RR+ PF T D Sbjct: 127 PLDMRMNPDQGISAAEFIATAPVEEIARVFKEYGEERFAGRMARAVVERREKQPFTRTAD 186 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ ++ K + +PATR+FQ LRI VNNE+ +L GL +A AL+ GG L V+SF Sbjct: 187 LAEVL-KVANPAWEKGKNPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLAVISF 245 Query: 251 HSLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQSI--TKKVVVPTQEDVAFNRRSR 307 HSLEDR+VK F G+ + +P H A I K ++ ++ N RSR Sbjct: 246 HSLEDRIVKLFMRKLVKGEADNLPRNLPVQ-HKAFEPKIKLIGKAQFASEAELKANPRSR 304 Query: 308 SAKLR 312 SA +R Sbjct: 305 SAVMR 309 >gi|315646023|ref|ZP_07899144.1| S-adenosyl-methyltransferase MraW [Paenibacillus vortex V453] gi|315278784|gb|EFU42098.1| S-adenosyl-methyltransferase MraW [Paenibacillus vortex V453] Length = 317 Score = 186 bits (473), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 114/309 (36%), Positives = 174/309 (56%), Gaps = 16/309 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQE 76 H+ VL ++ L P + +D T G G+S ++ SN +IALD+D +A++ +E Sbjct: 4 HITVLKQEATEGLRIKPDGIYVDCTLGGAGHSSLIASQLSSNGRLIALDQDDWALNNARE 63 Query: 77 TMRDYKEQFSLFQATFSQLQDY------VPDKG---VDGVVFDLGVSSMQIDCGDRGFSF 127 M+ Y ++ +L + F L++ V + G VDG++FDLGVSS Q D G+RGFS+ Sbjct: 64 VMKPYVDRITLVKTNFRDLEEVLRIEVGVDENGQPQVDGILFDLGVSSPQFDEGERGFSY 123 Query: 128 QKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 PLDMRM S ++A+ +VN+ +++ RIL GEEK + RIA IV+RR P Sbjct: 124 NHDAPLDMRMDQSAELTAAKIVNEWPEQEIARILYEYGEEKFSRRIAKVIVERRVQGPIH 183 Query: 187 TTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT +L +I++ + ++ HPA RSFQA RI VN+E+ L A + L GG + Sbjct: 184 TTGELVEMIKEGIPAAARRTGGHPAKRSFQAFRIAVNDELGAFKDALHQAVRCLAPGGRV 243 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 V++FHSLEDR+ K+ F S K M + + +K ++P+ E++ N Sbjct: 244 SVITFHSLEDRICKQIFNSYIPKCTCPPDFPMCVCGGGQGDLKLVNRKPLIPSVEEIESN 303 Query: 304 RRSRSAKLR 312 R+RSAKLR Sbjct: 304 PRARSAKLR 312 >gi|302528477|ref|ZP_07280819.1| MraW methylase [Streptomyces sp. AA4] gi|302437372|gb|EFL09188.1| MraW methylase [Streptomyces sp. AA4] Length = 318 Score = 186 bits (473), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 116/313 (37%), Positives = 172/313 (54%), Gaps = 14/313 (4%) Query: 19 DHVPVLLEKVIALLNPAPGK---VILDATFGAGGYS----RSFCKMGSNVIALDRDPFAV 71 +HVPVLL++++ L PA V++DAT G GG+S +F ++ +I LDRDP A+ Sbjct: 6 EHVPVLLDRIVELFAPALADRDAVLVDATVGLGGHSDALLSAFPRL--RLIGLDRDPAAL 63 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQ 128 E + + ++ L + L + V G VDG++FDLGVSSMQ+D +RGF++ Sbjct: 64 ERSAERLARHGDRVDLVHTVYDGLPEAVSGLGLSRVDGILFDLGVSSMQLDRAERGFAYS 123 Query: 129 KSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + PLDMRM +G +A+DV+N +L RIL GEE+ A RI A+V R+ PF Sbjct: 124 QDAPLDMRMDPTTGFTAADVLNTYAPGELIRILRDYGEERFAQRIVRAVVAEREKEPFTR 183 Query: 188 TQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 + L L+ V S+ HPA R+FQALRI VN E+E L + + +A L G ++ Sbjct: 184 SGRLVELLYSAVPAASRRTGGHPAKRTFQALRIEVNGELEVLRRAMPAALGTLAMNGRIV 243 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V S+ SLEDRLVK+ A R+ + H + +T+ + ++ N R+ Sbjct: 244 VESYQSLEDRLVKQALAERAKSRTPEGLPVELPGHGPELKLLTRGAEKAGESEIEHNPRA 303 Query: 307 RSAKLRAGMRTVE 319 S +LRA R E Sbjct: 304 ASVRLRAAQRIGE 316 >gi|188527446|ref|YP_001910133.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori Shi470] gi|226709922|sp|B2UTC1|RSMH_HELPS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|188143686|gb|ACD48103.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori Shi470] Length = 308 Score = 186 bits (473), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 118/302 (39%), Positives = 177/302 (58%), Gaps = 16/302 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVSCGQET 77 H VLL++V+ P V++D T G GG+S++ K +I +D+D FA +E Sbjct: 8 HQSVLLQEVLQAFAPLEEGVLIDCTLGLGGHSKAILSQKPHLKLIGIDKDKFAQEIAKER 67 Query: 78 MRDYKEQFSLFQATFSQ-LQDYVP--DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++ ++ +++L F++ ++ + DK + GV+ DLGVSS+Q+D RGF+F S LD Sbjct: 68 LKAFEGRYNLLSGGFAKRFKEALEMHDKEIKGVLVDLGVSSLQLDDDSRGFNFH-SHALD 126 Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM S ++A V+N V L +I GE K+ +IAH I +RR PF+ +DLS Sbjct: 127 MRMDLESDLNAQKVINSYPVVALEKIFKDYGEIKEYKKIAHKIAERRAKKPFKDAKDLSD 186 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 + SKN +IHPAT FQA+RI VN+E+EEL + L+ A +A +L V+SFHSL Sbjct: 187 FLSS---LSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCARNLKEA--ILCVISFHSL 241 Query: 254 EDRLVKKFFASRSGKVM---AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 ED LVK F + + + SN H A+ + +TKK + P+ E++ NRRSRSAK Sbjct: 242 EDALVKNAFKDYAKNCICDPSSFKCTCSNNH-ALGEILTKKPITPSPEEIKNNRRSRSAK 300 Query: 311 LR 312 +R Sbjct: 301 MR 302 >gi|168180112|ref|ZP_02614776.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum NCTC 2916] gi|182668973|gb|EDT80949.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum NCTC 2916] Length = 309 Score = 186 bits (473), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 117/302 (38%), Positives = 168/302 (55%), Gaps = 9/302 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+ VLLE+ I LN V +D T G GG+S+ K S+ +I +D+D A+ +E Sbjct: 5 HISVLLEETIDSLNIKEDGVYVDCTLGGGGHSKEILKKLSHKGKLIGIDQDTSAIKAAKE 64 Query: 77 TMRDYKEQFSL---FQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++DY+ + F S L++ DK VDG++ DLGVSS Q+D RGFS+ K PL Sbjct: 65 RLKDYENVIYVHNNFYNIDSILEELDIDK-VDGIIMDLGVSSYQLDEASRGFSYMKDAPL 123 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ SA +VVN ++L +IL GEEK + +IA IV++R P +TT +L Sbjct: 124 DMRMNREENFSAYNVVNNYEEEELFKILKNYGEEKFSRKIARFIVEKRTENPIETTGELV 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+K + HPA R+FQA+RI VN E++ L + + + L G L +++FHS Sbjct: 184 EIIRKAIPAKFQREGHPAKRTFQAIRIEVNKELQILNKAIEDSVNRLNKDGRLSIITFHS 243 Query: 253 LEDRLVK-KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK KF I + ITKK + P++E+ N RSRSAKL Sbjct: 244 LEDRIVKVKFKELEKPCTCPPSFPICVCGKEPQIKIITKKPIEPSKEEKEINSRSRSAKL 303 Query: 312 RA 313 R Sbjct: 304 RV 305 >gi|310642996|ref|YP_003947754.1| ribosomal RNA small subunit methyltransferase h [Paenibacillus polymyxa SC2] gi|309247946|gb|ADO57513.1| Ribosomal RNA small subunit methyltransferase H [Paenibacillus polymyxa SC2] Length = 316 Score = 186 bits (473), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 113/308 (36%), Positives = 174/308 (56%), Gaps = 15/308 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQE 76 H+ VL E+ LN + +D T G G+S ++G +IA D+D +A++ +E Sbjct: 4 HITVLKEEATQALNIRQDGIYVDCTLGGAGHSSVIASQLGPEGRLIAFDQDDWALNNARE 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---------VDGVVFDLGVSSMQIDCGDRGFSF 127 + Y+ + SL ++ F LQD + + G V G++FDLGVSS Q D G+RGFS+ Sbjct: 64 KLSAYEGKISLVKSNFRHLQDKLAELGLPEKDGVPQVQGILFDLGVSSPQFDEGERGFSY 123 Query: 128 QKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 PLDMRM S ++A ++VN+ ++ RIL GEEK + RIA +V+RR + P Sbjct: 124 NHDAPLDMRMDQSSSLTAYEIVNEWPEAEIARILFQYGEEKFSRRIAKIMVERRMNKPIH 183 Query: 187 TTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT +L +I++ + ++ HPA RSFQALRI VN+E+ L L A + L GG + Sbjct: 184 TTGELVDIIKEGIPAAARRTGGHPAKRSFQALRIAVNDELGALEDTLHQAVRCLAPGGRI 243 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 V++FHSLEDR+ K F K + + I + + + +K +V +++++ N Sbjct: 244 SVITFHSLEDRICKHIFKEYLAKSIYPSDLPILDDKMVGDLKLVNRKPIVASEQELELNP 303 Query: 305 RSRSAKLR 312 RSRSAKLR Sbjct: 304 RSRSAKLR 311 >gi|213691742|ref|YP_002322328.1| S-adenosyl-methyltransferase MraW [Bifidobacterium longum subsp. infantis ATCC 15697] gi|263445910|sp|B7GQ70|RSMH_BIFLI RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|213523203|gb|ACJ51950.1| S-adenosyl-methyltransferase MraW [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320457836|dbj|BAJ68457.1| S-adenosyl-methyltransferase [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 359 Score = 186 bits (473), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 120/306 (39%), Positives = 167/306 (54%), Gaps = 13/306 (4%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74 H+PVLL+ + L+ PA V +D T G G+S +F K + +I +DRD A+ Sbjct: 8 HLPVLLDDCVNLMAPALEHENAVAVDCTLGLAGHSIAFLKTAPQARLIGIDRDSEALGLA 67 Query: 75 QETMR--DYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK 129 E M ++F A F QL + D+G VD V DLG+SS+QID DRGFS+ Sbjct: 68 AERMEREGLADRFIPVHAAFDQLDQVLTDRGIERVDAVFMDLGLSSLQIDETDRGFSYSH 127 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM S ++A ++ + +L RI GEE+ + +IA AIV R PF TT Sbjct: 128 DAPLDMRMDVSQPLTAERILATYDAAELVRIFKEYGEERFSRQIARAIVAHRDKEPFTTT 187 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ L+ + V + +PA R FQALRI VN E+++LA L A L GG L+V Sbjct: 188 AQLNRLVDEVVPQAHRPAGNPAKRVFQALRIEVNGELDKLASTLPQAANRLHVGGRLVVE 247 Query: 249 SFHSLEDRLVKKFFA-SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 S+HSLED+ VK F A V A +IP +A P F +T+ + + ++A N RS Sbjct: 248 SYHSLEDKTVKSFMAQGLRVDVPAGLPVIPPDAQP-FFTDLTRGAIKADEHEIAANPRSA 306 Query: 308 SAKLRA 313 S +LRA Sbjct: 307 SVRLRA 312 >gi|296454440|ref|YP_003661583.1| S-adenosyl-methyltransferase MraW [Bifidobacterium longum subsp. longum JDM301] gi|296183871|gb|ADH00753.1| S-adenosyl-methyltransferase MraW [Bifidobacterium longum subsp. longum JDM301] Length = 359 Score = 186 bits (473), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 120/306 (39%), Positives = 167/306 (54%), Gaps = 13/306 (4%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74 H+PVLL+ + L+ PA + D T G G+S +F K + +I +DRD A+ Sbjct: 8 HLPVLLDDCVNLMVPALEHENAIAADCTLGLAGHSIAFLKAAPQARLIGIDRDSEALGLA 67 Query: 75 QETMR--DYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK 129 E M ++F A F QL + D+G VD V DLG+SS+QID DRGFS+ Sbjct: 68 TERMEREGLADRFIPVHAAFDQLDQVLTDRGIERVDAVFMDLGLSSLQIDETDRGFSYSH 127 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM S ++A ++ + +L RI GEE+ + +IA AIV RR PF TT Sbjct: 128 DAPLDMRMDVSQPLTAERILATYDAAELVRIFKEYGEERFSRQIARAIVARRDKEPFTTT 187 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ L+ + V + +PA R FQALRI VN E+++LA L A L GG L+V Sbjct: 188 AQLNRLVDEVVPQAHRPAGNPAKRVFQALRIEVNGELDKLASTLPQAANRLHVGGRLVVE 247 Query: 249 SFHSLEDRLVKKFFA-SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 S+HSLED+ VK F A V A +IP +A P F +T+ + + ++A N RS Sbjct: 248 SYHSLEDKTVKSFMAQGLRVDVPAGLPVIPPDAQP-FFTDLTRGAIKAGEHEIAANPRSA 306 Query: 308 SAKLRA 313 S +LRA Sbjct: 307 SVRLRA 312 >gi|254673389|emb|CBA08689.1| S-adenosyl-methyltransferase [Neisseria meningitidis alpha275] gi|319411060|emb|CBY91460.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis WUE 2594] Length = 328 Score = 186 bits (472), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 117/306 (38%), Positives = 173/306 (56%), Gaps = 10/306 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMG--SNVIALDRDPFAVSCGQE 76 H+ VLL++ + L V +D TFG GG+SR ++G +I D+DP A++ +E Sbjct: 9 HITVLLDEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFDKDPQAIAVAEE 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 R K + + F+ Q + G VDG +FDLG+SS QID G RGFSF+ PL Sbjct: 69 LARSDK-RVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGSRGFSFRFDAPL 127 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + G+SA++ + A+ +DL ++ GEE+ + +IA AIV +R +P TT+ L+ Sbjct: 128 DMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRAESPIDTTRKLA 187 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++ + V + + PATR+FQA+RIF+N E+EE+ L LK GG L V++FHS Sbjct: 188 QIVAQNVRTRERGQ-DPATRTFQAVRIFINRELEEVGAVLPQVMCRLKEGGRLAVIAFHS 246 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK+F S R A P I + + P + ++A N R+RSA L Sbjct: 247 LEDRIVKQFVKKYSQHAPLPRWAAVREADLPEPPLKIVGRALKPGEAEIAANPRARSAVL 306 Query: 312 RAGMRT 317 R RT Sbjct: 307 RVAERT 312 >gi|145588347|ref|YP_001154944.1| S-adenosyl-methyltransferase MraW [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|262824872|sp|A4SV66|RSMH_POLSQ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|145046753|gb|ABP33380.1| S-adenosyl-methyltransferase MraW [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 316 Score = 186 bits (472), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 124/312 (39%), Positives = 194/312 (62%), Gaps = 29/312 (9%) Query: 20 HVPVLL-EKVIALL--------NPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRD 67 H PVLL E V AL+ N A V++D TFG GG++++ K M + VI+ D+D Sbjct: 5 HRPVLLAEAVTALISGPLIQEKNAAKKIVVIDGTFGRGGHTQALLKSLEMSARVISFDKD 64 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 A+S Q+ ++D + F++ +F+ + Y + VDG++ DLG+SS Q+D RGFSF Sbjct: 65 LDAISVAQQ-IQDPR--FTIVHDSFAHMDQYAQAESVDGILLDLGISSPQVDEAHRGFSF 121 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV-KRRQSAPF 185 ++ GPLDMRM+ G++A++ + QA +++TR++ GEE+ A +IA AIV KR + Sbjct: 122 RREGPLDMRMNTDQGLTAAEWLEQAPQEEITRVIKTYGEERFAFQIAKAIVAKREEGLSP 181 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 +TT +L+SL+ V + + PATR+FQALRIF+N E+E+L GL++A K LK G L Sbjct: 182 KTTTELASLVASVVRTREAGQ-DPATRTFQALRIFINRELEDLELGLKAALKLLKPGARL 240 Query: 246 IVVSFHSLEDRLVKKFFASRSG----KVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDV 300 V+SFHSLEDR+VK+FF + + + + VR +P +A + + V P+ ++ Sbjct: 241 AVISFHSLEDRIVKQFFQAHAKVEIPRGLPVREKDLPQSALEIIGR------VKPSDLEI 294 Query: 301 AFNRRSRSAKLR 312 + N R+RSA +R Sbjct: 295 SENPRARSAIMR 306 >gi|329907257|ref|ZP_08274578.1| S-adenosyl-methyltransferase MraW [Oxalobacteraceae bacterium IMCC9480] gi|327547063|gb|EGF31946.1| S-adenosyl-methyltransferase MraW [Oxalobacteraceae bacterium IMCC9480] Length = 316 Score = 186 bits (472), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 117/307 (38%), Positives = 173/307 (56%), Gaps = 14/307 (4%) Query: 20 HVPVLLEKVI---ALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSC 73 H VLLE+ + AL + LD TFG GG+SR S G +IA D+DP A++ Sbjct: 7 HRTVLLEEAVEALALQGARTDGIYLDGTFGRGGHSRRILSALGAGGRLIAFDKDPQAIAS 66 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130 E +F + +F+ L + +GV DGV+ DLG+SS Q+D RGFSF+ Sbjct: 67 AGEIA---DPRFDIVHDSFATLDLALSARGVGLVDGVLLDLGISSPQVDDAARGFSFRAD 123 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 GPLDMRM + G+SA++ + +++ +++ GEE+ A +IA AI R P +T+ Sbjct: 124 GPLDMRMDTTRGLSAAEWLATETEQNIEKVIRNYGEERFAFQIAKAIAASRTIEPISSTR 183 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ ++ +TV + + PATR+FQA+RI++N E+EEL GL+ A L G L+V+S Sbjct: 184 QLAQIVARTVKTREKGK-DPATRTFQAIRIYINQELEELEIGLQQAYARLAPHGRLVVIS 242 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDR+VK+F AS++ R + + I P+ E+VA N RSRSA Sbjct: 243 FHSLEDRIVKRFMASKAHVEQPDRRLPIRAVDLPQPEMILISKAKPSTEEVAGNPRSRSA 302 Query: 310 KLRAGMR 316 +R R Sbjct: 303 VMRVAQR 309 >gi|261391925|emb|CAX49387.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis 8013] Length = 328 Score = 186 bits (472), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 117/306 (38%), Positives = 173/306 (56%), Gaps = 10/306 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMG--SNVIALDRDPFAVSCGQE 76 H+ VLL + + L V +D TFG GG+SR ++G +I D+DP A++ +E Sbjct: 9 HITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFDKDPQAIAVAEE 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 R K + + F+ Q + G VDG +FDLG+SS QID G RGFSF+ PL Sbjct: 69 LARSDK-RVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGSRGFSFRFDAPL 127 Query: 134 DMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + G+SA++ + A+ +DL ++ GEE+ + +IA AIV +R +P TT+ L+ Sbjct: 128 DMRMDTMRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRAESPIDTTRKLA 187 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++ + V + + PATR+FQA+RIF+N E+EE+ L LK GG L V++FHS Sbjct: 188 QIVAQNVRTRERGQ-DPATRTFQAVRIFINRELEEVGAVLPQVMCRLKEGGRLAVIAFHS 246 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK+F S R A P + I + + P + ++A N R+RSA L Sbjct: 247 LEDRIVKQFVKKYSQHAPLPRWAAVREADLPELPLKIVGRALKPGEAEIAANPRARSAVL 306 Query: 312 RAGMRT 317 R RT Sbjct: 307 RVAERT 312 >gi|328675727|gb|AEB28402.1| S-adenosyl-methyltransferase MraW [Francisella cf. novicida 3523] Length = 305 Score = 186 bits (472), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 122/307 (39%), Positives = 181/307 (58%), Gaps = 22/307 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN-VIALDRDPFAVSCGQET 77 H VLL++ I LN P + +DATFG GG+S++ K+ + +IA D+D A+S + Sbjct: 2 HYSVLLQESINDLNINPQGIYIDATFGRGGHSKAILDKLTTGRLIAFDKDLDAISYANQ- 60 Query: 78 MRDYKEQFSLFQ---ATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 K QFS F+ A+F+ + DY +DG++ DLGVSS Q+D RGFSF Sbjct: 61 ----KFQFSNFEIVHASFASIYDYCLQHNLLSKIDGIIMDLGVSSPQLDNAARGFSFMHD 116 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTT 188 GPLDMRM S GI+AS + +V +L+ I + GEE+ A +IA I +Q+ TT Sbjct: 117 GPLDMRMDVSKGITASQALEVLSVDELSYIFKVYGEERFARKIALRIKDYIQQNGSINTT 176 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ LI+ T+ K + +PATR FQALRI+VNNE+++L L + +KAGG + + Sbjct: 177 LELAELIRMTI--GKREKKNPATRCFQALRIYVNNELKDLEALLENILAVIKAGGRIAAI 234 Query: 249 SFHSLEDRLVKKFFASR---SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 SFHSLEDR+VK+ F++ ++ + M+P ++ + ITKK +++ N R Sbjct: 235 SFHSLEDRIVKQKFSALINPKQELNRITKMLPQDSSQIKLKWITKK-AKANDDELNQNVR 293 Query: 306 SRSAKLR 312 SRSA LR Sbjct: 294 SRSAILR 300 >gi|153938691|ref|YP_001390802.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum F str. Langeland] gi|263446093|sp|A7GDE2|RSMH_CLOBL RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|152934587|gb|ABS40085.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum F str. Langeland] gi|295318872|gb|ADF99249.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum F str. 230613] Length = 309 Score = 186 bits (472), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 117/302 (38%), Positives = 168/302 (55%), Gaps = 9/302 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+ VLLE+ I LN V +D T G GG+S+ K S+ +I +D+D A+ +E Sbjct: 5 HISVLLEETIDSLNIKEDGVYVDCTLGGGGHSKEILKKLSHKGKLIGIDQDTSAIKAAKE 64 Query: 77 TMRDYKEQFSL---FQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++DY+ + F S L++ DK VDG++ DLGVSS Q+D RGFS+ K PL Sbjct: 65 KLKDYENIIYVHNNFYNIDSILEELDIDK-VDGIIMDLGVSSYQLDEASRGFSYMKDAPL 123 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ SA +VVN ++L +IL GEEK + +IA IV++R P +TT +L Sbjct: 124 DMRMNREENFSAYNVVNSYEEEELFKILKNYGEEKFSRKIARFIVEKRTENPIETTGELV 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+K + HPA R+FQA+RI VN E++ L + + + L G L +++FHS Sbjct: 184 EIIRKAIPAKFQREGHPAKRTFQAIRIEVNKELQILNKAIEDSVNRLNKDGRLSIITFHS 243 Query: 253 LEDRLVK-KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK KF I + ITKK + P++E+ N RSRSAKL Sbjct: 244 LEDRIVKVKFKELEKPCTCPPSFPICVCGKEPQIKIITKKPIEPSKEEKEINSRSRSAKL 303 Query: 312 RA 313 R Sbjct: 304 RV 305 >gi|91776629|ref|YP_546385.1| methyltransferase [Methylobacillus flagellatus KT] gi|123078758|sp|Q1GYZ3|RSMH_METFK RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|91710616|gb|ABE50544.1| methyltransferase [Methylobacillus flagellatus KT] Length = 321 Score = 186 bits (472), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 126/322 (39%), Positives = 183/322 (56%), Gaps = 17/322 (5%) Query: 9 MSSAIHHT----IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--V 61 MS+ I H + HV VLLE+ + L+ P V +D TFG GG+SR K+G+ + Sbjct: 1 MSAGISHVPAAQVSQHVTVLLEEAVEALSIKPDGVYVDGTFGRGGHSRKILEKLGAQGRL 60 Query: 62 IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQI 118 +ALDRD A+ Q ++D + F + + F+ + + + VDGV+ DLG+SS QI Sbjct: 61 VALDRDLAAIQAAQ-GIQDAR--FKIVHSHFAAMAQVLASLNIQQVDGVLLDLGISSPQI 117 Query: 119 DCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177 D G+RGFSF+ GPLDMRM S G +A++ + A ++LTR++ GEE+ A +IA AIV Sbjct: 118 DEGERGFSFRFDGPLDMRMDQSRGQTAAEFIATATEQELTRVIKEYGEERFAKQIARAIV 177 Query: 178 KRRQSA-PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236 +R TT L+ ++ V + + PATR+FQALRIF+N E+EEL+ L Sbjct: 178 AQRAGGMDISTTGQLAKIVAGAVPKVEPGQ-DPATRTFQALRIFINQELEELSLTLPQCL 236 Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVP 295 L G L V+SFHSLEDR+VK+F + H + ++ P + V P Sbjct: 237 SLLAPQGRLAVISFHSLEDRIVKRFIRGEQDRDNLPAHFPVRASDLPQPRLVAIGRAVRP 296 Query: 296 TQEDVAFNRRSRSAKLRAGMRT 317 ++++V N RSRSA LR RT Sbjct: 297 SEDEVRRNPRSRSAVLRVAERT 318 >gi|325995985|gb|ADZ51390.1| rRNA small subunit methyltransferase H [Helicobacter pylori 2018] gi|325997580|gb|ADZ49788.1| S-adenosyl methyltransferase [Helicobacter pylori 2017] Length = 308 Score = 186 bits (472), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 119/302 (39%), Positives = 180/302 (59%), Gaps = 16/302 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVSCGQET 77 H VLL++V+ P V++D T G GG+S++ K +I +D+D FA +E Sbjct: 8 HQSVLLQEVLQAFTPLEEGVLIDCTLGLGGHSKAILSQKPHLKLIGIDKDKFAQEIAKER 67 Query: 78 MRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 +++++ +++L F++ ++ + G + GV+ DLGVSS+Q+D +RGF+F +S LD Sbjct: 68 LKEFEGRYNLLSGGFAKRFKEALEIHGERIKGVLVDLGVSSLQLDDDNRGFNF-RSHALD 126 Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM S ++A V+N V L +I GE K+ +IAH I +RR PF+ +DLS Sbjct: 127 MRMDLESELNAQKVINSYPVVALEKIFRDYGEIKEYKKIAHKIAERRAKKPFKDAKDLSE 186 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 + SKN +IHPAT FQA+RI VN+E+EEL + L+ A + LK G +L V+SFHSL Sbjct: 187 FLSS---LSKNKKIHPATLVFQAVRIEVNSELEELKEFLQYA-RNLK-GAILCVISFHSL 241 Query: 254 EDRLVKKFFASRSGKVM---AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 ED LVK F + + + SN H A+ +TKK + P+ E++ NRRSRSAK Sbjct: 242 EDGLVKNAFKDYAKNCICDPSSFKCACSNNH-ALGAILTKKPITPSPEEIKNNRRSRSAK 300 Query: 311 LR 312 +R Sbjct: 301 MR 302 >gi|309783013|ref|ZP_07677732.1| S-adenosyl-methyltransferase MraW [Ralstonia sp. 5_7_47FAA] gi|308918121|gb|EFP63799.1| S-adenosyl-methyltransferase MraW [Ralstonia sp. 5_7_47FAA] Length = 319 Score = 186 bits (472), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 119/313 (38%), Positives = 182/313 (58%), Gaps = 21/313 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VLLE+ + L + +D TFG GG+SR + G ++A D+DP A++ Sbjct: 11 HQTVLLEEAVDALIWRDDGIYIDGTFGRGGHSRRILERLGPGGRLVAFDKDPAAITEAG- 69 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 T+ D + F++ +F+Q+ + +G++ GV+ DLG+SS QID G RGFSF+ GPL Sbjct: 70 TVEDAR--FAIEHDSFAQMAQCLDARGIERVAGVLLDLGISSPQIDEGARGFSFRMDGPL 127 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR----QSAPFQTT 188 DMRM + GI+A+ + +A+ +D+ R++ GEE+ A +IA AIV RR P T Sbjct: 128 DMRMDTTRGITAAQWLAEADERDIARVIRDYGEERFAVQIAKAIVARRGQSGDRGPLDRT 187 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L++L+ + V + + PATR+FQALRI VN E+ +L GL++A + L+ GG L+V+ Sbjct: 188 SELAALVAQAVKTREKGQ-DPATRTFQALRIHVNQELADLETGLKAAFERLEQGGRLVVI 246 Query: 249 SFHSLEDRLVKKF---FASRSGKVMAVRHMIPSNAH--PAVFQSITKKVVVPTQEDVAFN 303 SFHSLEDR+VK+F A P AH P + + V P++ +V+ N Sbjct: 247 SFHSLEDRIVKRFMQALARPEQSAAPELRRAPLRAHELPTPQLRLLGR-VKPSEAEVSAN 305 Query: 304 RRSRSAKLRAGMR 316 R+RSA +R R Sbjct: 306 PRARSAIMRVAER 318 >gi|313200234|ref|YP_004038892.1| s-adenosyl-methyltransferase mraw [Methylovorus sp. MP688] gi|312439550|gb|ADQ83656.1| S-adenosyl-methyltransferase MraW [Methylovorus sp. MP688] Length = 321 Score = 186 bits (472), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 126/317 (39%), Positives = 186/317 (58%), Gaps = 25/317 (7%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVS 72 + HV VLLE+ +A L P + +D TFG GG+SR ++G++ ++ LDRD AVS Sbjct: 12 VVSPHVSVLLEEAVAALAIKPNGIYVDGTFGRGGHSRKILEQLGADGRLLGLDRDLAAVS 71 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK 129 Q +++D + FS+ FS+L + + + VDGV+ DLG+SS QID G+RGFSF+ Sbjct: 72 AAQ-SIQDPR--FSIHHHHFSELGEVLRAQDIQQVDGVLLDLGISSPQIDEGERGFSFRF 128 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA-PFQT 187 GPLDMRM S G +A++ + +A+ + LT ++ GEE+ A ++A AIV R T Sbjct: 129 DGPLDMRMDQSRGQTAAEFLAEASEQQLTGVIKEYGEERFAKQVARAIVAARTGGNALTT 188 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T L+ ++ + + + PATR+FQALRIF+N E+EEL+ L AL GG L V Sbjct: 189 TGQLAKVVAGAIPKVEPGQ-DPATRTFQALRIFLNQELEELSLVLPQCLDALAPGGRLAV 247 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK-------KVVVPTQEDV 300 +SFHSLEDR+VK+F S R +P+N P + + + + K + P+ ++ Sbjct: 248 ISFHSLEDRIVKRFVRSEQD-----RDDLPAN-FPVLAKDLPQPRMMAVGKPIKPSAAEI 301 Query: 301 AFNRRSRSAKLRAGMRT 317 N RSRSA LR RT Sbjct: 302 KRNPRSRSAVLRVAERT 318 >gi|322805771|emb|CBZ03336.1| rRNAsmall subunit methyltransferase H [Clostridium botulinum H04402 065] Length = 309 Score = 186 bits (472), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 118/304 (38%), Positives = 170/304 (55%), Gaps = 13/304 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+ VLLE+ I LN V +D T G GG+S+ K S+ +I +D+D A+ +E Sbjct: 5 HISVLLEETIDSLNIKEDGVYVDCTLGGGGHSKEILKKLSHKGKLIGIDQDTSAIKAAKE 64 Query: 77 TMRDYKEQFSL---FQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++DY+ + F S L++ DK VDG++ DLGVSS Q+D RGFS+ K PL Sbjct: 65 KLKDYENIIYVHNNFYNIDSILEELDIDK-VDGIIMDLGVSSYQLDEASRGFSYMKDAPL 123 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ SA +VVN ++L +IL GEEK + +IA IV++R P +TT +L Sbjct: 124 DMRMNREENFSAYNVVNSYEEEELFKILKNYGEEKFSRKIARFIVEKRTENPIETTGELV 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+K + HPA R+FQA+RI VN E++ L + + + L G L +++FHS Sbjct: 184 EIIRKAIPAKFQREGHPAKRTFQAIRIEVNKELQILNKAIEDSVNRLNKDGRLSIITFHS 243 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIP---SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 LEDR+VK F K P P + + ITKK + P++E+ N RSRSA Sbjct: 244 LEDRIVKVKFKELE-KPCTCPPSFPICVCRKEPQI-KIITKKPIEPSKEEKEINSRSRSA 301 Query: 310 KLRA 313 KLR Sbjct: 302 KLRV 305 >gi|90416328|ref|ZP_01224260.1| S-adenosyl-methyltransferase [marine gamma proteobacterium HTCC2207] gi|90332053|gb|EAS47267.1| S-adenosyl-methyltransferase [marine gamma proteobacterium HTCC2207] Length = 309 Score = 186 bits (472), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 107/302 (35%), Positives = 168/302 (55%), Gaps = 6/302 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H VLL + I + P +D TFG GG++ S V+A+D+DP A+ G++ Sbjct: 9 HTSVLLHEAIDAVVTDPDGFYIDGTFGRGGHTAELLSRLSEHGRVLAIDKDPQAIEAGRK 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 D + ++ +F+ + D+ + V GV+ DLGVSS Q+D +RGFSF + GPLDMR Sbjct: 69 RFAD-DSRLTIVHGSFADMGDWREGREVTGVLLDLGVSSPQLDQAERGFSFMRDGPLDMR 127 Query: 137 M-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M + SG+SA++ ++ A D+ +++ GEE+ A R+A A+V+ R AP T L+ ++ Sbjct: 128 MDTSSGLSAAEWIDTAAEADIAQVIKEFGEERFAKRMAAAVVRERDLAPITRTVQLAKIL 187 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + + HPAT++FQA+RIF+N E+++L L LK G L+V+SFHSLED Sbjct: 188 ADAHPAWERGK-HPATKAFQAIRIFINRELDDLVALLEQVIDLLKIDGRLVVISFHSLED 246 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 R VK+F + + +++ + V K + P +V N RSRSA +R Sbjct: 247 RKVKRFIRDQERGIKLPKNLPVRDVERGVRLKKIGKAIKPEAVEVGGNVRSRSAVMRVAE 306 Query: 316 RT 317 R Sbjct: 307 RV 308 >gi|308069889|ref|YP_003871494.1| S-adenosyl-methyltransferase mraW [Paenibacillus polymyxa E681] gi|305859168|gb|ADM70956.1| S-adenosyl-methyltransferase mraW [Paenibacillus polymyxa E681] Length = 316 Score = 186 bits (472), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 111/308 (36%), Positives = 175/308 (56%), Gaps = 15/308 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQE 76 H+ VL E+ LN + +D T G G+S ++G +IA D+D +A++ +E Sbjct: 4 HITVLKEEATQALNIRQDGIYVDCTLGGAGHSSVIASQLGPEGRLIAFDQDDWALNNARE 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---------VDGVVFDLGVSSMQIDCGDRGFSF 127 + Y+ + SL ++ F LQD + + G V G++FDLGVSS Q D G+RGFS+ Sbjct: 64 KLSAYEGKISLVKSNFRHLQDKLTELGLPEKDGVPQVQGILFDLGVSSPQFDEGERGFSY 123 Query: 128 QKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 PLDMRM S ++A ++VN+ + ++ RIL GEEK + RIA +++RR + P Sbjct: 124 NHDAPLDMRMDQSSSLTAYEIVNEWSEAEIARILFHYGEEKFSRRIAKIMIERRLNKPIH 183 Query: 187 TTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT +L +I++ + ++ HPA RSFQALRI VN+E+ L L A + L GG + Sbjct: 184 TTGELVDIIKEGIPAAARRTGGHPAKRSFQALRIAVNDELGALEDSLHQAIRCLAPGGRI 243 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 V++FHSLEDR+ K F K + + I + + + +K ++ +++++ N Sbjct: 244 SVITFHSLEDRICKHIFKEYLAKSIYPSDLPILEDKMEGDLKLVNRKPIMASEQELELNP 303 Query: 305 RSRSAKLR 312 RSRSAKLR Sbjct: 304 RSRSAKLR 311 >gi|208434621|ref|YP_002266287.1| hypothetical protein HPG27_664 [Helicobacter pylori G27] gi|226709921|sp|B5Z772|RSMH_HELPG RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|208432550|gb|ACI27421.1| hypothetical protein HPG27_664 [Helicobacter pylori G27] Length = 308 Score = 186 bits (472), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 118/302 (39%), Positives = 175/302 (57%), Gaps = 16/302 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVSCGQET 77 H VLL++V+ P V++D T G GG+S++ K +I +D+D FA +E Sbjct: 8 HQSVLLQEVLQAFTPLEEGVLVDCTLGLGGHSKALLSQKPHLKLIGIDKDKFAQEIAKER 67 Query: 78 MRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++ ++ +++L F++ ++ + G + GV+ DLGVSS+Q+D +RGF+F S LD Sbjct: 68 LKAFEGRYNLLSGGFAKRFKEALEIHGDRIKGVLVDLGVSSLQLDDDNRGFNFH-SHALD 126 Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM S ++A V+N V L +I GE K+ +IAH I +RR PF+ +DLS Sbjct: 127 MRMDLESDLNAQKVINSYPVIALEKIFRDYGEIKEYKKIAHKIAERRAKKPFKDAKDLSD 186 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 + FSKN +IHPAT FQA+RI VN+E+EEL + L+ A G +L V+SFHSL Sbjct: 187 FLSS---FSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCARNL--NGAILCVISFHSL 241 Query: 254 EDRLVKKFFASRSGKVMA---VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 ED LVK F + + SN H A+ +TKK + P+ E++ NRRSRSAK Sbjct: 242 EDGLVKNAFKDYAKNCICDPLSFQCTCSNNH-ALGAILTKKPITPSPEEIKNNRRSRSAK 300 Query: 311 LR 312 +R Sbjct: 301 MR 302 >gi|218768820|ref|YP_002343332.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis Z2491] gi|20139195|sp|Q9JSY9|RSMH_NEIMA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|121052828|emb|CAM09176.1| conserved hypothetical protein [Neisseria meningitidis Z2491] gi|308388613|gb|ADO30933.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis alpha710] gi|325130837|gb|EGC53570.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis OX99.30304] gi|325136978|gb|EGC59575.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis M0579] gi|325208773|gb|ADZ04225.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis NZ-05/33] Length = 328 Score = 186 bits (472), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 117/306 (38%), Positives = 172/306 (56%), Gaps = 10/306 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMG--SNVIALDRDPFAVSCGQE 76 H+ VLL + + L V +D TFG GG+SR ++G +I D+DP A++ +E Sbjct: 9 HITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFDKDPQAIAVAEE 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 R K + + F+ Q + G VDG +FDLG+SS QID G RGFSF+ PL Sbjct: 69 LARSDK-RVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGSRGFSFRFDAPL 127 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + G+SA++ + A+ +DL ++ GEE+ + +IA AIV +R +P TT+ L+ Sbjct: 128 DMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRAESPIDTTRKLA 187 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++ + V + + PATR+FQA+RIF+N E+EE+ L LK GG L V++FHS Sbjct: 188 QIVAQNVRTRERGQ-DPATRTFQAIRIFINRELEEVGAVLPQVMCRLKEGGRLAVIAFHS 246 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK+F S R A P I + + P + ++A N R+RSA L Sbjct: 247 LEDRIVKQFVKKYSQHAPLPRWAAVREADLPEPPLKIAGRALKPGEAEIAANPRARSAVL 306 Query: 312 RAGMRT 317 R RT Sbjct: 307 RVAERT 312 >gi|257467026|ref|ZP_05631337.1| methyltransferase [Fusobacterium gonidiaformans ATCC 25563] Length = 313 Score = 186 bits (472), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 113/311 (36%), Positives = 180/311 (57%), Gaps = 22/311 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+PVL E+ + L P + +D T G G +S K S +I++D+D A++ ++ Sbjct: 9 HIPVLYEETLDQLVWNPDGIYIDCTLGGGSHSEGILKRLSEKGRLISIDQDANAIAFCKK 68 Query: 77 TMRDYKEQFSLFQATFSQLQ--DYVP--DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + +Q+S+FQ F + Y+ DK VDG++ D+GVSS Q+D G+RGFS++ Sbjct: 69 RLEKHGKQWSVFQNNFENIDIVSYLAGVDK-VDGILMDIGVSSTQLDDGERGFSYRYDAK 127 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ +SA +VVN +DL RIL GEE+ A +IA I + R+ P +TT +L Sbjct: 128 LDMRMNKEQDLSAYEVVNTYAEQDLVRILFEYGEERHAKKIASFICENRKEKPIETTGEL 187 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++I++ +S+ HPA ++FQA+RI VN E+E L + ++ + LK G L +++FH Sbjct: 188 VAIIKRA--YSERASKHPAKKTFQAIRIEVNRELEVLEKAIQKSVDLLKPKGHLAIITFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSN------AHPAVFQSITKKVVVPTQEDVAFNRR 305 SLEDRLVK F K +A P A + +TKK ++P+++++ N R Sbjct: 246 SLEDRLVKTVF-----KDLATACKCPPELPVCVCGGKAKVKILTKKPIIPSEDELGKNNR 300 Query: 306 SRSAKLRAGMR 316 + S+KLR R Sbjct: 301 AHSSKLRVVER 311 >gi|262202917|ref|YP_003274125.1| S-adenosyl-methyltransferase MraW [Gordonia bronchialis DSM 43247] gi|262086264|gb|ACY22232.1| S-adenosyl-methyltransferase MraW [Gordonia bronchialis DSM 43247] Length = 336 Score = 186 bits (472), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 117/320 (36%), Positives = 185/320 (57%), Gaps = 23/320 (7%) Query: 20 HVPVLLEKVIALLNPA----PGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSC 73 H+PVL ++ LL P+ +V++DAT GAGG++ N+ + +DRD A++ Sbjct: 16 HLPVLAARMAELLAPSLESGDERVLVDATLGAGGHAELMLNRFPNLRLVGIDRDAHALAI 75 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 ++ + ++ SL QA F QL + D G+DG +FDLGVSSMQ+D RGF++ Sbjct: 76 AEKRLAPMADRISLHQARFDQLPQVLADAAIDGIDGALFDLGVSSMQLDQPGRGFAYAID 135 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM+ G++A+DV+N + +L R+L GEE+ A RIA A++ R+ PF T+ Sbjct: 136 APLDMRMNDEDGLTAADVLNTYSHGELARVLSEYGEERFAGRIASAVIAEREKEPFTTSA 195 Query: 190 DLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L +L+ + + ++ HPA R+FQALRI VN+E++ + + +A A + GG + V+ Sbjct: 196 RLVALLYQAIPAATRRTGGHPAKRTFQALRIEVNHELDAIRAAVPAALDATRVGGRVAVM 255 Query: 249 SFHSLEDRLVKKFFASR----SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 S+ SLEDR++K+ FA+R S + + V +P A F+ IT+ P + R Sbjct: 256 SYQSLEDRIIKREFATRTTSTSPRGLPVE--LPGTA--PRFRLITRGAERPDAAE--LER 309 Query: 305 RSRSAKLRAGMRTVERSIED 324 RSA +R +R +ER D Sbjct: 310 NPRSAPVR--VRVIERVAAD 327 >gi|134302412|ref|YP_001122382.1| S-adenosyl-methyltransferase MraW [Francisella tularensis subsp. tularensis WY96-3418] gi|263447543|sp|A4IZB0|RSMH_FRATW RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|134050189|gb|ABO47260.1| S-adenosyl-methyltransferase MraW [Francisella tularensis subsp. tularensis WY96-3418] Length = 299 Score = 186 bits (472), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 118/302 (39%), Positives = 180/302 (59%), Gaps = 22/302 (7%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQETMRDYK 82 +++ I LN P + +DATFG GG+S++ +IA D+D A+S +E Sbjct: 1 MQESINDLNINPQGIYIDATFGRGGHSKAILNRLTTGRLIAFDKDLDAISYARENF---- 56 Query: 83 EQFSLFQ---ATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 QFS F+ A+F+ + DY +DG++ DLGVSS Q+D RGFSF +GPLDM Sbjct: 57 -QFSNFEIVHASFASIYDYCLQHSLLGKIDGIIMDLGVSSPQLDNAARGFSFTHNGPLDM 115 Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTTQDLSS 193 RM S GI+AS + + +V DL+ I + GEE+ A +IA I +Q+ +TT +L+ Sbjct: 116 RMDVSKGITASQALEELSVDDLSYIFKVYGEERFAKKIALRIKDYIQQNGSIRTTLELAE 175 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 LI+ T+ K + +PATR FQALRI+VNNE+++L L + +K+GG + V+SFHSL Sbjct: 176 LIRATI--GKKEKKNPATRCFQALRIYVNNELKDLEALLENILAVIKSGGRIAVISFHSL 233 Query: 254 EDRLVKKFFASR---SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 EDR+VK+ F++ ++ + M+P ++ + ITKK ++++ N RSRSA Sbjct: 234 EDRIVKQKFSALINPKQELNRITKMLPQDSSQIKLKWITKK-SKANEDELNQNVRSRSAI 292 Query: 311 LR 312 LR Sbjct: 293 LR 294 >gi|49186768|ref|YP_030020.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. Sterne] gi|49180695|gb|AAT56071.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. Sterne] Length = 310 Score = 186 bits (471), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 113/304 (37%), Positives = 173/304 (56%), Gaps = 11/304 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 +HV VLL++ + L+ P +D T G GG+S G +IA D+D A+ + Sbjct: 3 NHVTVLLKETVDGLDIKPDGTYVDCTLGGGGHSSYLLSQLTEGGRLIAFDQDEIAIQNAK 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E Y EQF ++ F L + + + G VDG++FDLGVSS Q+D +RGFS+ P Sbjct: 63 EKFSSYGEQFITVKSNFRYLSEKLQELGITEVDGILFDLGVSSPQLDTPERGFSYHHDAP 122 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM ++A D VN + + L RI GEEK + +IA I R++ +TT +L Sbjct: 123 LDMRMDQDAPLTAYDAVNSWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTGEL 182 Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 LI++ + ++ HPA R FQA+RI VN+E++ + L SA + +K GG + V++F Sbjct: 183 VELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRVSVITF 242 Query: 251 HSLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 HSLEDR+ K F S + ++ +IP P + + IT+K ++P+ ++ N R+RS Sbjct: 243 HSLEDRICKTTFKRNSTTPQLPPGLPIIPDEFKPKL-KLITRKPILPSDIELEENNRARS 301 Query: 309 AKLR 312 AKLR Sbjct: 302 AKLR 305 >gi|317483063|ref|ZP_07942064.1| MraW methylase [Bifidobacterium sp. 12_1_47BFAA] gi|291516661|emb|CBK70277.1| S-adenosyl-methyltransferase MraW [Bifidobacterium longum subsp. longum F8] gi|316915469|gb|EFV36890.1| MraW methylase [Bifidobacterium sp. 12_1_47BFAA] Length = 359 Score = 186 bits (471), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 120/306 (39%), Positives = 167/306 (54%), Gaps = 13/306 (4%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74 H+PVLL+ + L+ PA + +D T G G+S +F K + +I +DRD A+ Sbjct: 8 HLPVLLDDCVNLMAPALEHENAIAVDCTLGLAGHSIAFLKAAPQARLIGIDRDSEALGLA 67 Query: 75 QETMR--DYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK 129 E M ++F A F QL + D+ VD V DLG+SS+QID DRGFS+ Sbjct: 68 TERMEREGLADRFIPVHAAFDQLDQVLADQDIERVDAVFMDLGLSSLQIDETDRGFSYSH 127 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM S ++A ++ + +L RI GEE+ + +IA AIV RR PF TT Sbjct: 128 DAPLDMRMDVSQPLTAERILATYDAAELVRIFKEYGEERFSRQIARAIVARRDKEPFTTT 187 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ L+ + V + +PA R FQALRI VN E+++LA L A L GG L+V Sbjct: 188 AQLNRLVDEVVPQAHRPAGNPAKRVFQALRIEVNGELDKLASTLPQAANRLHVGGRLVVE 247 Query: 249 SFHSLEDRLVKKFFA-SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 S+HSLED+ VK F A V A +IP +A P F +T+ V + ++A N RS Sbjct: 248 SYHSLEDKTVKSFMAQGLRVDVPAGLPVIPPDAQP-FFTDLTRGAVKADEHEIAANPRSA 306 Query: 308 SAKLRA 313 S +LRA Sbjct: 307 SVRLRA 312 >gi|325205481|gb|ADZ00934.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis M04-240196] Length = 328 Score = 186 bits (471), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 117/306 (38%), Positives = 172/306 (56%), Gaps = 10/306 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMG--SNVIALDRDPFAVSCGQE 76 H+ VLL + + L V +D TFG GG+SR ++G +I D+DP A++ +E Sbjct: 9 HITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFDKDPQAIAVAEE 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 R K + + F+ Q + G VDG +FDLG+SS QID G RGFSF+ PL Sbjct: 69 LARSDK-RVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGSRGFSFRFDAPL 127 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + G+SA++ + A+ +DL ++ GEE+ + +IA AIV +R +P TT+ L+ Sbjct: 128 DMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRAESPIDTTRKLA 187 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++ + V + + PATR+FQA+RIF+N E+EE+ L LK GG L V++FHS Sbjct: 188 QIVAQNVRTRERGQ-DPATRTFQAIRIFINRELEEVGAVLPQVMCRLKEGGRLAVIAFHS 246 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK+F S R A P I + + P + ++A N R+RSA L Sbjct: 247 LEDRIVKQFVKKYSQHAPLPRWAAVREADLPEPPLKIVGRALKPGEAEIAANPRARSAVL 306 Query: 312 RAGMRT 317 R RT Sbjct: 307 RVAERT 312 >gi|313667806|ref|YP_004048090.1| s-adenosyl-l-methionine-dependent methyltransferase MraW [Neisseria lactamica ST-640] gi|313005268|emb|CBN86701.1| s-adenosyl-l-methionine-dependent methyltransferase MraW (ec 2.1.1.-) [Neisseria lactamica 020-06] Length = 319 Score = 186 bits (471), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 122/306 (39%), Positives = 170/306 (55%), Gaps = 10/306 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMG--SNVIALDRDPFAVSCGQE 76 H+ VLL + + L V +D TFG GG+SR ++G ++ D+DP AV+ +E Sbjct: 9 HITVLLHEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLVVFDKDPRAVAAAEE 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 R K + S+ F+ Q + D G VDG +FDLGVSS QID RGFSF+ PL Sbjct: 69 LARSDK-RVSVVHGGFASFQTALDDLGIGDVDGALFDLGVSSPQIDDAARGFSFRFDAPL 127 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + G+SA++ + A+ +DL ++ GEE+ + +IA AIV +R P TT+ L+ Sbjct: 128 DMRMDTTRGMSAAEWIASASEQDLHEVIKNYGEERFSRQIARAIVAQRAENPIDTTRKLA 187 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 L + V + + PATR+FQA+RIF+N E+EE+ L LK GG L V++FHS Sbjct: 188 QLAAQNVRTRECGQ-DPATRTFQAVRIFINRELEEVEAVLPQVMCRLKQGGRLAVIAFHS 246 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK+F S R A P I K + P +VA N R+RSA L Sbjct: 247 LEDRIVKQFVGKYSRHAPLPRWAAVREADLPEPPLKIVGKALKPGGAEVAANPRARSAVL 306 Query: 312 RAGMRT 317 R RT Sbjct: 307 RVAERT 312 >gi|302185277|ref|ZP_07261950.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv. syringae 642] Length = 313 Score = 186 bits (471), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 119/307 (38%), Positives = 177/307 (57%), Gaps = 20/307 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H+ VLLE+ + L LD TFG GG+SR ++G + ++ D+DP A++ GQ Sbjct: 7 HITVLLEEAVEALAVRADGCYLDGTFGRGGHSRLILSQLGPDGRLLGFDKDPQAIATGQ- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F + Q +F++L ++G V G++ DLGVSS Q+D +RGFSF GP Sbjct: 66 ALAAEDGRFVIVQRSFAELGSEAQERGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDGP 125 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G+SA+ + A +++ R+ GEE+ A R+A+A+V RR+ PF+ T DL Sbjct: 126 LDMRMDPTRGVSAAQFIATAPAEEIARVFKEYGEERFAKRMANAVVARREVQPFERTADL 185 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ K + +PATR+FQ LRI VNNE+ +L GL +A AL+ GG L+V+SFH Sbjct: 186 AEVL-KVANPAWEKGKNPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLVVISFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA------FNRR 305 SLEDR+V K F + K A +P N P F+ K+ + + A N R Sbjct: 245 SLEDRIV-KLFMRKLAKGEA--DNMPRNL-PIQFKPFEPKIKIHGKAQFASDVETKANPR 300 Query: 306 SRSAKLR 312 SRSA +R Sbjct: 301 SRSAVMR 307 >gi|288574844|ref|ZP_06393201.1| S-adenosyl-methyltransferase MraW [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570585|gb|EFC92142.1| S-adenosyl-methyltransferase MraW [Dethiosulfovibrio peptidovorans DSM 11002] Length = 332 Score = 186 bits (471), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 125/306 (40%), Positives = 180/306 (58%), Gaps = 25/306 (8%) Query: 19 DHVPVLLEKVIALLNP-APGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQ 75 +HVPV+LE+V+ L I+DAT G GGYS + G NV +DRDP A++ Sbjct: 4 EHVPVMLEEVLEYLKKTGSSGPIVDATLGLGGYSEAILARIEGVNVFGIDRDPQALTMAS 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + + ++F + FS L+ + D V GVVFDLGVS+MQI +RGFSF+++GP Sbjct: 64 ERLSPFGKRFIPIKGNFSDLKGLLEDIDGIPVGGVVFDLGVSNMQISLPERGFSFRENGP 123 Query: 133 LDMRMSCS--GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK-RRQSAPFQTTQ 189 LDMRM+ G SA+D+V + +L+ I GEE+ A IA +IV+ R +S P + T Sbjct: 124 LDMRMNHEDGGESAADMVRELTAPELSEIFRKYGEERFAWPIAKSIVRYREKSGPIEDTD 183 Query: 190 DLSSLIQKTVY--FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 L +I+K + + + HPA + FQALRI VN E++ L +GL SA + + GG+++V Sbjct: 184 TLVEVIRKALPAPVMRKAKGHPARKVFQALRIAVNKEMDALDEGLNSALEVISPGGVVVV 243 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 VS+HSLEDR+VK F R K + +TKK +VP+ ++ N +SR Sbjct: 244 VSYHSLEDRIVKWKF--RGWKDQGEGTI------------LTKKALVPSDLEIENNTKSR 289 Query: 308 SAKLRA 313 SAKLRA Sbjct: 290 SAKLRA 295 >gi|17547571|ref|NP_520973.1| S-adenosyl-methyltransferase MraW [Ralstonia solanacearum GMI1000] gi|20138981|sp|Q8XVH9|RSMH_RALSO RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|17429875|emb|CAD16559.1| putative s-adenosyl-methyltransferase mraw protein [Ralstonia solanacearum GMI1000] Length = 319 Score = 186 bits (471), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 123/313 (39%), Positives = 182/313 (58%), Gaps = 21/313 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VL ++ I L + +D TFG GG+SR + G +IA D+DP A++ Sbjct: 11 HQTVLRDEAIDALLWRDDGIYIDGTFGRGGHSRLILERLGPGGRLIAFDKDPAAITEAG- 69 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 T+ D + F++ +F+ L + +G V GV+ DLG+SS QID G RGFSF+ GPL Sbjct: 70 TVEDAR--FAIEHDSFAHLDAALDARGIGRVAGVLLDLGISSPQIDEGARGFSFRMDGPL 127 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTT 188 DMRM + GI+A+ + +A+ +D+ R++ GEE+ A +IA AIV RR+ + P T Sbjct: 128 DMRMDTTRGITAAQWLAEADERDIARVIRDYGEERFAVQIAKAIVARRRESGTRGPLDRT 187 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L++L+ + V + + PATR+FQALRI VN E+ +L GL+SA + L+ GG L+V+ Sbjct: 188 SELAALVAQAVKTREKGQ-DPATRTFQALRIHVNQELADLETGLKSAFERLEQGGRLVVI 246 Query: 249 SFHSLEDRLVKKF---FASRSGKVMAVRHMIPSNAH--PAVFQSITKKVVVPTQEDVAFN 303 SFHSLEDR+VK+F A P AH PA + + V P++ +V+ N Sbjct: 247 SFHSLEDRIVKRFMQALARPEQSAAPEMRRAPLRAHELPAPQLRLLGR-VRPSEAEVSAN 305 Query: 304 RRSRSAKLRAGMR 316 RSRSA +R R Sbjct: 306 PRSRSAIMRVAER 318 >gi|320533237|ref|ZP_08033944.1| S-adenosyl-methyltransferase MraW [Actinomyces sp. oral taxon 171 str. F0337] gi|320134542|gb|EFW26783.1| S-adenosyl-methyltransferase MraW [Actinomyces sp. oral taxon 171 str. F0337] Length = 329 Score = 186 bits (471), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 108/271 (39%), Positives = 163/271 (60%), Gaps = 24/271 (8%) Query: 17 IGDHVPVLLEKVIALLNPA------------PGK-VILDATFGAGGYSRSFCKM--GSNV 61 +G H PVLLE+ + LL PA P + V++D T G GG++ + + V Sbjct: 14 VGRHQPVLLERCLDLLAPAIEGHADSTSTGGPARPVMIDCTLGMGGHTEAALERFPALKV 73 Query: 62 IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYV------PDKGVDGVVFDLGVSS 115 + +DRDP A++ + + ++F QAT+ + + VD V+ DLGVSS Sbjct: 74 VGIDRDPEAIALASARLARFGDRFIAVQATYDAVNRVAREHSARAEGAVDAVLMDLGVSS 133 Query: 116 MQIDCGDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAH 174 +Q+D RGFS+ + PLDMRM SG++A D++ A+ +L+RIL GEE+ ASRIA Sbjct: 134 LQLDEASRGFSYARPAPLDMRMDQGSGMTAQDLLETADAVELSRILRTYGEERFASRIAA 193 Query: 175 AIVKRRQSA-PFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGL 232 AIV+RRQ+ P +TQDL+ L+++ V ++ + HPA R+FQALRI VN E++ L + + Sbjct: 194 AIVRRRQAGEPVVSTQDLAELVRQAVPAPARRSGGHPAKRTFQALRIAVNAELDVLERAV 253 Query: 233 RSAEKALKAGGLLIVVSFHSLEDRLVKKFFA 263 A +L+ GG L+V S+ SLEDR+VK+ A Sbjct: 254 PRALNSLRVGGRLVVESYQSLEDRIVKRALA 284 >gi|315918163|ref|ZP_07914403.1| S-adenosyl-methyltransferase mraW [Fusobacterium gonidiaformans ATCC 25563] gi|313692038|gb|EFS28873.1| S-adenosyl-methyltransferase mraW [Fusobacterium gonidiaformans ATCC 25563] Length = 318 Score = 186 bits (471), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 113/311 (36%), Positives = 180/311 (57%), Gaps = 22/311 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+PVL E+ + L P + +D T G G +S K S +I++D+D A++ ++ Sbjct: 14 HIPVLYEETLDQLVWNPDGIYIDCTLGGGSHSEGILKRLSEKGRLISIDQDANAIAFCKK 73 Query: 77 TMRDYKEQFSLFQATFSQLQ--DYVP--DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + +Q+S+FQ F + Y+ DK VDG++ D+GVSS Q+D G+RGFS++ Sbjct: 74 RLEKHGKQWSVFQNNFENIDIVSYLAGVDK-VDGILMDIGVSSTQLDDGERGFSYRYDAK 132 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ +SA +VVN +DL RIL GEE+ A +IA I + R+ P +TT +L Sbjct: 133 LDMRMNKEQDLSAYEVVNTYAEQDLVRILFEYGEERHAKKIASFICENRKEKPIETTGEL 192 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++I++ +S+ HPA ++FQA+RI VN E+E L + ++ + LK G L +++FH Sbjct: 193 VAIIKRA--YSERASKHPAKKTFQAIRIEVNRELEVLEKAIQKSVDLLKPKGHLAIITFH 250 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSN------AHPAVFQSITKKVVVPTQEDVAFNRR 305 SLEDRLVK F K +A P A + +TKK ++P+++++ N R Sbjct: 251 SLEDRLVKTVF-----KDLATACKCPPELPVCVCGGKAKVKILTKKPIIPSEDELGKNNR 305 Query: 306 SRSAKLRAGMR 316 + S+KLR R Sbjct: 306 AHSSKLRVVER 316 >gi|170755383|ref|YP_001781092.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum B1 str. Okra] gi|263446089|sp|B1IKR0|RSMH_CLOBK RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|169120595|gb|ACA44431.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum B1 str. Okra] Length = 309 Score = 186 bits (471), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 116/302 (38%), Positives = 168/302 (55%), Gaps = 9/302 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+ VLLE+ I LN V +D T G GG+S+ K S+ +I +D+D A+ +E Sbjct: 5 HISVLLEETIDSLNIKEDGVYVDCTLGGGGHSKEILKKLSHKGKLIGIDQDTSAIKAAKE 64 Query: 77 TMRDYKEQFSL---FQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++DY+ + F S L++ DK VDG++ DLGVSS Q+D RGFS+ K PL Sbjct: 65 KLKDYENIIYVHNNFYNIDSILEELDIDK-VDGIIMDLGVSSYQLDEASRGFSYMKDAPL 123 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +SA V+N ++L +IL GEEK + +IA IV++R P +TT +L Sbjct: 124 DMRMNREENLSAYGVINNYEEEELFKILKNYGEEKFSRKIARFIVEKRTENPIETTGELV 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+K + HPA R+FQA+RI VN E++ L + + + L G L +++FHS Sbjct: 184 EIIRKAIPAKFQREGHPAKRTFQAIRIEVNKELQILNKAIEDSVNRLNKDGRLSIITFHS 243 Query: 253 LEDRLVK-KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK KF I + ITKK + P++E+ N RSRSAKL Sbjct: 244 LEDRIVKVKFKELEKPCTCPPSFPICVCGKEPQIKIITKKPIEPSKEEKEINSRSRSAKL 303 Query: 312 RA 313 R Sbjct: 304 RV 305 >gi|187930165|ref|YP_001900652.1| S-adenosyl-methyltransferase MraW [Ralstonia pickettii 12J] gi|262825235|sp|B2UCY5|RSMH_RALPJ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|187727055|gb|ACD28220.1| S-adenosyl-methyltransferase MraW [Ralstonia pickettii 12J] Length = 319 Score = 186 bits (471), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 120/313 (38%), Positives = 182/313 (58%), Gaps = 21/313 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VLL++ + L + +D TFG GG+SR + G ++A D+DP A++ Sbjct: 11 HQTVLLDEAVDALIWRDDGIYIDGTFGRGGHSRRILERLGPGGRLVAFDKDPAAITEAG- 69 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 T+ D + F++ +F+Q+ + +GV+ GV+ DLG+SS QID G RGFSF+ GPL Sbjct: 70 TVEDAR--FAIEHDSFAQMARCLDARGVEQVAGVLLDLGISSPQIDEGARGFSFRMDGPL 127 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR----QSAPFQTT 188 DMRM + GI+A+ + +A+ +D+ R++ GEE+ A +IA AIV RR P T Sbjct: 128 DMRMDTTRGITAAQWLAEADERDIARVIRDYGEERFAVQIAKAIVARRGQSGDRGPLDRT 187 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L++L+ + V + + PATR+FQALRI VN E+ +L GL++A L+ GG L+V+ Sbjct: 188 SELAALVAQAVKTREKGQ-DPATRTFQALRIHVNQELADLETGLKAAFDRLEQGGRLVVI 246 Query: 249 SFHSLEDRLVKKF---FASRSGKVMAVRHMIPSNAH--PAVFQSITKKVVVPTQEDVAFN 303 SFHSLEDR+VK+F A P AH PA + + V P++ +V+ N Sbjct: 247 SFHSLEDRIVKRFMQALARPEQSAAPELRRAPLRAHELPAPQLRLLGR-VKPSEAEVSAN 305 Query: 304 RRSRSAKLRAGMR 316 R+RSA +R R Sbjct: 306 PRARSAIMRVAER 318 >gi|254426992|ref|ZP_05040699.1| S-adenosyl-methyltransferase MraW [Alcanivorax sp. DG881] gi|196193161|gb|EDX88120.1| S-adenosyl-methyltransferase MraW [Alcanivorax sp. DG881] Length = 312 Score = 186 bits (471), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 115/301 (38%), Positives = 171/301 (56%), Gaps = 10/301 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF-CKMGSN--VIALDRDPFAVSCGQ 75 +H PV+LE+V+ + +D TFG GG+SR+ ++ N + +DRDP A++ GQ Sbjct: 9 EHQPVMLEEVLDMWFSQSEGFYVDGTFGRGGHSRALLARLDDNGRLAGIDRDPQAIAAGQ 68 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 E + +F + F L V G +DG++ DLGVSS Q+D RGFSF + GPL Sbjct: 69 E-LAASDSRFHMVANRFDCLPQVVEQAGRPIDGLLLDLGVSSPQLDDAARGFSFLRDGPL 127 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM G S ++ ++ A KD+ +L GEE+++ IA I R+ P T L+ Sbjct: 128 DMRMDPTQGESVAEWLSHAAEKDIANVLYRYGEERKSRWIAKRICDTRKEQPITRTLQLA 187 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +LI+ + ++ + HPATRSFQALRI +N E++ L Q L + + L GG L ++SFHS Sbjct: 188 NLIESVLGRNEQGK-HPATRSFQALRIHINGELDALNQVLEQSLETLAIGGRLAIISFHS 246 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK F SG+ R +P N P + + K + ++ ++ N RSRSA L Sbjct: 247 LEDRIVKLFIRDHSGRAPKGRGGLPLGNEMPQRLEPVGKAMRA-SKAELKVNVRSRSAVL 305 Query: 312 R 312 R Sbjct: 306 R 306 >gi|332295500|ref|YP_004437423.1| Ribosomal RNA small subunit methyltransferase H [Thermodesulfobium narugense DSM 14796] gi|332178603|gb|AEE14292.1| Ribosomal RNA small subunit methyltransferase H [Thermodesulfobium narugense DSM 14796] Length = 298 Score = 186 bits (471), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 114/306 (37%), Positives = 168/306 (54%), Gaps = 34/306 (11%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H+PVLL +V+ N APGKV++D T GAGG+S +F K G ++ D+D AV E Sbjct: 9 HIPVLLNEVLENSNLAPGKVVVDGTIGAGGHSFNFLKKILPGGFLLGFDKDIEAVKLAVE 68 Query: 77 TMRDY--KEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + F++F F Y+ P D DLG+S+MQI +RGFSF K Sbjct: 69 KLSSTFDRNSFTIFNDKFENFVKYLNFLPYGKFDLFFLDLGLSTMQIKESNRGFSFMKDE 128 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM ++ASD +N A+ +++ + GEE ++ ++A I RR+ PF++T D Sbjct: 129 KLDMRMDLKEKMTASDWLNSASEEEMEEVFRKYGEEPKSRKLAKMISLRRREKPFESTMD 188 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ L++K + R HPATR FQA+RI +N+EIE L LR A + + G +IV+SF Sbjct: 189 LAQLVKKIYPYG---RRHPATRIFQAIRIVINDEIEHLEATLREATNHINSLGRIIVISF 245 Query: 251 HSLEDRLVKKFFASRS----GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 HS EDR+VK F + G+V ITKK ++ ++ + N + Sbjct: 246 HSGEDRVVKWTFKNLEKEGRGRV------------------ITKKPIIASESETKENPSA 287 Query: 307 RSAKLR 312 RSAK+R Sbjct: 288 RSAKMR 293 >gi|205373089|ref|ZP_03225894.1| S-adenosyl-methyltransferase MraW [Bacillus coahuilensis m4-4] Length = 311 Score = 186 bits (471), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 108/309 (34%), Positives = 171/309 (55%), Gaps = 11/309 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 +H VLL + + L P + +D T G G+S G ++ A D+D A+ Sbjct: 3 NHTTVLLRETVDELKIKPNGIYVDCTLGGAGHSEYLLSQLGEGGHLFAFDQDETALRHAA 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + Y ++ + ++ F L+ + + GVDG+++DLGVSS Q+D +RGFS+ P Sbjct: 63 EKLNAYSDKVTYVKSNFRYLKSELTNLGVMGVDGILYDLGVSSPQLDTPERGFSYHHDAP 122 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM G +SA +VVN+ + + L RI GEEK + +IA I R+ P +TT +L Sbjct: 123 LDMRMDLQGAVSAYEVVNEWSYEKLVRIFFQYGEEKFSKQIARKIEAAREVNPIETTGEL 182 Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 LI++ + ++ HPA R FQA+RI VN+E+ + + L GG + V++F Sbjct: 183 VELIKEGIPAPARRKGGHPAKRIFQAIRIAVNDELTAFEDSAKDGIQLLHKGGRMSVITF 242 Query: 251 HSLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 HSLEDR+ K F S+ ++ +IP P + + +T+K ++P+ E++A N RSRS Sbjct: 243 HSLEDRICKNLFKEYSKGPELPPGLPIIPEGYEPKL-KIVTRKPILPSDEELAHNNRSRS 301 Query: 309 AKLRAGMRT 317 AKLR + Sbjct: 302 AKLRVAEKN 310 >gi|167772169|ref|ZP_02444222.1| hypothetical protein ANACOL_03544 [Anaerotruncus colihominis DSM 17241] gi|167665967|gb|EDS10097.1| hypothetical protein ANACOL_03544 [Anaerotruncus colihominis DSM 17241] Length = 311 Score = 186 bits (471), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 115/300 (38%), Positives = 175/300 (58%), Gaps = 8/300 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77 HVPVLL+ + LN P + +D T G G+SR+ + G +IALD+DP AV+ Sbjct: 8 HVPVLLDACLEGLNIRPDGIYVDGTAGGAGHSRAIAERLDGGRLIALDKDPDAVAVASSR 67 Query: 78 MRDYKEQFSLFQATFSQL---QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + + ++ Q+ FS+L D + + VDG++ DLGVSS Q+D +RGFS+ PLD Sbjct: 68 LAPFGCA-TVVQSDFSELCTVLDKLGIEAVDGILLDLGVSSYQLDTPERGFSYAHDAPLD 126 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRM+ +G+SA DVVN + KDL R+ GEEK A IA I+K R P TT +L+++ Sbjct: 127 MRMTKTGLSARDVVNTYSFKDLCRVFRDYGEEKFAPAIAKNILKSRTQRPIATTAELAAI 186 Query: 195 IQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 I ++ ++ +PA R FQA+RI VN E+ L+ L A + L+ GG + +++FHSL Sbjct: 187 IGASIPARARREGGNPAKRVFQAIRIEVNGELSSLSVFLGEAFERLRIGGRMAIITFHSL 246 Query: 254 EDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 EDR+VK+ FA+ G + + + + +K + + ++A N RS+SAKLR Sbjct: 247 EDRMVKQRFAALCRGCTCPPDFPVCICGNQPRGRLLNRKPIEAGERELAANSRSKSAKLR 306 >gi|170759536|ref|YP_001786877.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum A3 str. Loch Maree] gi|263446098|sp|B1L164|RSMH_CLOBM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|169406525|gb|ACA54936.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum A3 str. Loch Maree] Length = 309 Score = 186 bits (471), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 117/302 (38%), Positives = 167/302 (55%), Gaps = 9/302 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+ VLLE+ I LN V +D T G GG+S+ K S+ +I +D+D A+ +E Sbjct: 5 HISVLLEETIDSLNIKEDGVYVDCTLGGGGHSKEILKKLSHKGKLIGIDQDTSAIKAAKE 64 Query: 77 TMRDYKEQFSL---FQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++DY+ + F S L++ DK VDG++ DLGVSS Q+D RGFS+ K PL Sbjct: 65 RLKDYENVIYVHNNFYNIDSILEELDIDK-VDGIIMDLGVSSYQLDEASRGFSYMKDAPL 123 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ SA +VVN ++L RI GEEK + +IA IV++R P +TT +L Sbjct: 124 DMRMNREENFSAYNVVNSYEEEELFRIFKNYGEEKFSRKIARFIVEKRTENPIETTGELV 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+K + HPA R+FQA+RI VN E++ L + + + L G L +++FHS Sbjct: 184 EIIRKAIPAKFQREGHPAKRTFQAIRIEVNKELQILNKAIEDSVNRLNKDGRLSIITFHS 243 Query: 253 LEDRLVK-KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK KF I + ITKK + P++E+ N RSRSAKL Sbjct: 244 LEDRIVKVKFKELEKPCTCPPSFPICVCGKEPQIKIITKKPIEPSKEEKEINSRSRSAKL 303 Query: 312 RA 313 R Sbjct: 304 RV 305 >gi|197116881|ref|YP_002137308.1| S-adenosyl-methyltransferase MraW [Geobacter bemidjiensis Bem] gi|263447558|sp|B5EBP3|RSMH_GEOBB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|197086241|gb|ACH37512.1| SAM-dependent membrane protein methyltransferase MraW [Geobacter bemidjiensis Bem] Length = 312 Score = 186 bits (471), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 120/302 (39%), Positives = 173/302 (57%), Gaps = 9/302 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H+ VL ++V+ L+P G V +D T G G++ + +I DRD A++ +E Sbjct: 6 HISVLPDEVLQALSPRSGGVYVDGTLGGAGHAGLILTASAPDGQLIGFDRDEEAIAVARE 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ + + + F+ + + + GVDG+ V DLGVSS Q+D +RGFSF PL Sbjct: 66 RLQVFGGRVRIIHRNFAGIAQALAEIGVDGIDGFVLDLGVSSHQLDRDERGFSFMHDAPL 125 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM SG SA+D+VN +L RI+ GEE+ A R+A IVK R P +TT L Sbjct: 126 DMRMDRSSGQSAADLVNTLPEGELYRIISEYGEERWAKRVASFIVKARDERPIETTLQLV 185 Query: 193 SLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ ++ +K R+HPATR+FQALRI VN E++ L +GL LK GG V+SFH Sbjct: 186 DVIKGSIPKAKWEERLHPATRTFQALRIAVNEELKSLEEGLEGLLSLLKQGGRGAVISFH 245 Query: 252 SLEDRLVKKFF-ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK+ F A+ +G I F+ +T+K + + +VA N RSRSAK Sbjct: 246 SLEDRIVKEGFRAAATGCTCPKELPICICGRVPRFKLVTRKPITAGEAEVAANPRSRSAK 305 Query: 311 LR 312 LR Sbjct: 306 LR 307 >gi|289423186|ref|ZP_06425001.1| S-adenosyl-methyltransferase MraW [Peptostreptococcus anaerobius 653-L] gi|289156517|gb|EFD05167.1| S-adenosyl-methyltransferase MraW [Peptostreptococcus anaerobius 653-L] Length = 311 Score = 186 bits (471), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 114/313 (36%), Positives = 181/313 (57%), Gaps = 23/313 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76 HV VLL++ I LN P +D T G G+S+ K +G N +I D+D A++ +E Sbjct: 5 HVSVLLDECIDNLNINPDGTYVDCTMGGAGHSKEIAKRLGENGRLICFDQDINAINVAKE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + ++K++ L + F +++ + ++ +D GV+ DLGVSS Q+D RGFS+ L Sbjct: 65 RLAEFKDRVILVHSNFENIKEELLERNIDSIDGVLADLGVSSHQLDEAFRGFSYMNDASL 124 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + +SA DVVN + +DL RI+ GEE ASRIA IV+ R+ TT +L Sbjct: 125 DMRMDDRNSMSAWDVVNTYSQEDLHRIIKDYGEENWASRIAQFIVEERKEKDINTTFELV 184 Query: 193 SLIQKTVYFSKNNRI---HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 +I+K + K RI HPA R+FQA+RI VNNE+ + + + + + GG + +++ Sbjct: 185 DIIKKAI--PKKARIDGPHPAKRTFQAIRIEVNNELGVIKKMIDDSVSMMNPGGRICIIT 242 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIP------SNAHPAVFQSITKKVVVPTQEDVAFN 303 FHSLEDR+VK + K +++ + P S + + IT+K ++P+++++ N Sbjct: 243 FHSLEDRIVKNEY-----KYLSLDCICPPELPFCSCDKVSEVKIITRKPILPSKQEIEVN 297 Query: 304 RRSRSAKLRAGMR 316 RSRSAKLR + Sbjct: 298 PRSRSAKLRVAEK 310 >gi|167636587|ref|ZP_02394881.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0442] gi|170688833|ref|ZP_02880036.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0465] gi|254683371|ref|ZP_05147231.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. CNEVA-9066] gi|254743854|ref|ZP_05201537.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. Kruger B] gi|167528010|gb|EDR90816.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0442] gi|170667188|gb|EDT17948.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0465] Length = 310 Score = 186 bits (471), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 113/304 (37%), Positives = 173/304 (56%), Gaps = 11/304 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 +HV VLL++ + L+ P +D T G GG+S G +IA D+D A+ + Sbjct: 3 NHVTVLLKETVDGLDIKPDGTYVDCTLGGGGHSSYLLSQLTEGGRLIAFDQDEIAIQNAK 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E Y EQF ++ F L + + + G VDG++FDLGVSS Q+D +RGFS+ P Sbjct: 63 EKFSSYGEQFITVKSNFRYLSEKLQELGITEVDGILFDLGVSSPQLDTPERGFSYHHDAP 122 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM ++A DVVN + + L RI GEEK + +IA I R++ +TT +L Sbjct: 123 LDMRMDQDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTGEL 182 Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 LI++ + ++ HPA R FQA+RI VN+E++ + L SA + +K GG + V++F Sbjct: 183 VELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRVSVITF 242 Query: 251 HSLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 HSLEDR+ K F S + ++ + P P + + IT+K ++P+ ++ N R+RS Sbjct: 243 HSLEDRICKTTFKRNSTTPQLPPGLPITPDEFKPKL-KLITRKPILPSDIELEENNRARS 301 Query: 309 AKLR 312 AKLR Sbjct: 302 AKLR 305 >gi|310779075|ref|YP_003967408.1| S-adenosyl-methyltransferase MraW [Ilyobacter polytropus DSM 2926] gi|309748398|gb|ADO83060.1| S-adenosyl-methyltransferase MraW [Ilyobacter polytropus DSM 2926] Length = 314 Score = 186 bits (471), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 115/306 (37%), Positives = 175/306 (57%), Gaps = 20/306 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+PVL + I L G V LD T G GG+S K S +I++D+D A+ E Sbjct: 10 HIPVLYRETIENLVKNEGGVYLDCTLGGGGHSEGILKALSEKGKLISIDQDQQALDFAGE 69 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + Y +++ ++ F L + G +DG++ D+GVSS Q+D +RGFS++ L Sbjct: 70 RLGKYGKKWESYKDNFENLDTVLYLAGYDKIDGILMDIGVSSTQLDDPERGFSYRFDTKL 129 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ + +SA +VVNQ L++I+ GEE+ A +IA I + R P +TT DL Sbjct: 130 DMRMNKNAKVSAYEVVNQYEEGRLSKIIYDYGEERHARKIARLICEIRAEKPIETTGDLV 189 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I K Y K+ + HPA ++FQA+RI VN E++ L + + A ALK GG L +++FHS Sbjct: 190 EII-KRAYKGKSPK-HPAMKTFQAIRIEVNRELDVLERSIDKAINALKPGGRLAIITFHS 247 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNA------HPAVFQSITKKVVVPTQEDVAFNRRS 306 LEDR+VK F K M+V + P + A + IT+K + P +++ FN+R+ Sbjct: 248 LEDRMVKNKF-----KEMSVDCICPPELPVCRCDNKAKVKIITRKPITPKDDELKFNKRA 302 Query: 307 RSAKLR 312 RS+KLR Sbjct: 303 RSSKLR 308 >gi|255068190|ref|ZP_05320045.1| S-adenosyl-methyltransferase MraW [Neisseria sicca ATCC 29256] gi|255047532|gb|EET42996.1| S-adenosyl-methyltransferase MraW [Neisseria sicca ATCC 29256] Length = 317 Score = 186 bits (471), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 119/309 (38%), Positives = 171/309 (55%), Gaps = 16/309 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQE 76 H+ VLL + + L + +D TFG GG+SR ++GS +I D+DP A+ Q+ Sbjct: 8 HITVLLNEAVDALAVREDGIYVDGTFGRGGHSRLILSRLGSQGRLIVFDKDPQAIEAAQK 67 Query: 77 TMRD------YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 ++FS FQ T +L + +DG +FDLG+SS QID G RGFSF+ Sbjct: 68 LAEQDGRVTVVHDRFSSFQTTLDKLDI----EEIDGALFDLGISSPQIDDGARGFSFRFD 123 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM + G+SA++ + A+ +DL ++ GEE+ + +IA AIV +R +P TT+ Sbjct: 124 APLDMRMDPTRGMSAAEWIATASEQDLHEVIKNYGEERFSRQIARAIVAQRTESPIDTTR 183 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ L+ + V + + PATR+FQA+RIF+N E+EE+ L LK GG L V++ Sbjct: 184 KLAQLVAQNVRTRERGQ-DPATRTFQAVRIFINRELEEVEAVLPQVMGRLKQGGRLAVIA 242 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK+F S R A P K + P E+ A N R+RS Sbjct: 243 FHSLEDRIVKQFVKKYSQHPPLPRWAAVKEADLPLPPLKAVGKAIKPGVEETASNPRARS 302 Query: 309 AKLRAGMRT 317 A LR RT Sbjct: 303 AVLRVAERT 311 >gi|254831717|ref|ZP_05236372.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes 10403S] Length = 312 Score = 186 bits (471), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 106/303 (34%), Positives = 174/303 (57%), Gaps = 11/303 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VLL + + +L P + +DAT G G+S ++ A D+D A+ + Sbjct: 4 HETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDNAKI 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + DY ++ + +A F +++ + ++G VDG+++DLGVSS Q+D +RGFS+ + L Sbjct: 64 KLADYSDKVTFIKANFRDMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQDAAL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM ++A VVN+ + +DL RI GEEK + +IA I + R+ P +TT +L Sbjct: 124 DMRMDQEQELTAKTVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERHREVKPIETTGELV 183 Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + ++ HP R+FQA+RI VN+E+ + L A +K GG + V++FH Sbjct: 184 DIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLIKPGGRISVITFH 243 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+ K+ F A++ + +IP P F+ T+K +VP++E++ N R+RSA Sbjct: 244 SLEDRITKQLFQEATKGPDLPPGLPVIPDEYKPD-FKLATRKPIVPSEEELEQNNRARSA 302 Query: 310 KLR 312 KLR Sbjct: 303 KLR 305 >gi|254993138|ref|ZP_05275328.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL J2-064] Length = 308 Score = 185 bits (470), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 107/300 (35%), Positives = 173/300 (57%), Gaps = 11/300 (3%) Query: 23 VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMR 79 VLL + + +L P + +DAT G G+S ++ A D+D A+ + + Sbjct: 3 VLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDNAKIKLA 62 Query: 80 DYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 DY ++ + +A F +++ + ++G VDG+++DLGVSS Q+D +RGFS+ + LDMR Sbjct: 63 DYSDKVTFIKANFRDMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQDAALDMR 122 Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M ++A VVN+ + +DL RI GEEK + +IA I +RR+ P +TT +L +I Sbjct: 123 MDQEQELTAKIVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTGELVDII 182 Query: 196 QKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 + + ++ HP R+FQA+RI VN+E+ + L A LK GG + V++FHSLE Sbjct: 183 KTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLLKPGGRISVITFHSLE 242 Query: 255 DRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 DR+ K F A++ + +IP P F+ T+K +VP++E++ N R+RSAKLR Sbjct: 243 DRITKHLFQEATKGPDLPPGLPVIPDEYKPD-FKLATRKPIVPSEEELEQNNRARSAKLR 301 >gi|220912331|ref|YP_002487640.1| S-adenosyl-methyltransferase MraW [Arthrobacter chlorophenolicus A6] gi|263447791|sp|B8HGW2|RSMH_ARTCA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|219859209|gb|ACL39551.1| S-adenosyl-methyltransferase MraW [Arthrobacter chlorophenolicus A6] Length = 330 Score = 185 bits (470), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 114/299 (38%), Positives = 170/299 (56%), Gaps = 15/299 (5%) Query: 20 HVPVLLEKVIALLNPA------PGK--VILDATFGAGGYSRSFCKMGSNV--IALDRDPF 69 HVPVL ++ I LL P GK +++DAT G GG+S + + ++ I +DRD Sbjct: 12 HVPVLRDRCINLLAPGFDAARQQGKAPIVIDATLGMGGHSEAMLQRFPDLHLIGIDRDEE 71 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFS 126 A++ E + + + L A + ++ + + D GV G++ DLGVSS+Q+D +RGF+ Sbjct: 72 ALALAGERLAPFSARTDLVHAVYDEIPEVLADLGVTEISGILMDLGVSSLQLDERERGFA 131 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 + PLDMRM S G +A+DVVN N ++L RI+ GEEK A RIA+ IV R PF Sbjct: 132 YSFDAPLDMRMDTSRGQTAADVVNTYNEEELVRIIRKWGEEKFAGRIANRIVAARGEKPF 191 Query: 186 QTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 TT +L I+ V + + HPA R+FQALRI VN E++ L + + +A AL GG Sbjct: 192 TTTGELVEQIRSVVPAGAAKSGGHPAKRTFQALRIEVNEELDVLERAVPAAVDALAMGGR 251 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 ++V+S+HSLED++VK RS + + H + +TK VPT ++A N Sbjct: 252 IVVMSYHSLEDKIVKSVLQGRSKSSAPLGFPVELEEHKPELKILTKGTEVPTAVEIAEN 310 >gi|318607135|emb|CBY28633.1| rrna small subunit methyltransferase H [Yersinia enterocolitica subsp. palearctica Y11] Length = 303 Score = 185 bits (470), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 119/309 (38%), Positives = 179/309 (57%), Gaps = 19/309 (6%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQETMRD 80 +L++ + LN + +D TFG GG+SR ++G +IA+DRDP A+ + Sbjct: 1 MLDEAVNGLNIRDNGIYIDGTFGRGGHSRLILSQLGPEGCLIAIDRDPQAIKAAKSIT-- 58 Query: 81 YKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 +FS+ FS L YV + ++GV+ DLGVSS Q+D +RGFSF + GPLDMR Sbjct: 59 -DPRFSIVHGPFSDLAHYVRELDLVGRINGVLLDLGVSSPQLDDPERGFSFMRDGPLDMR 117 Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M + GISA++ + +A+ D+ +L GEE+ A R+A AIV+ + P T++L+ LI Sbjct: 118 MDPTRGISAAEWLMKASADDIAWVLKTFGEERFAKRLAKAIVECNLTQPMTRTKELADLI 177 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 F + ++ HPATRSFQA+RI++N+E+EE+ + L A + L G L V+SFHSLED Sbjct: 178 ANASPFREKHK-HPATRSFQAIRIYINSELEEIERALDGALEVLAPEGRLSVISFHSLED 236 Query: 256 RLVKKFFA--SRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRSRSAK 310 R+VK F SR +V A + + +S+ K ++P +VA N R+RS+ Sbjct: 237 RIVKNFIRHHSRGPQVPAGLPLTEAQLRSMGGRTLKSVGK--MMPPDAEVAENPRARSSV 294 Query: 311 LRAGMRTVE 319 LR R E Sbjct: 295 LRFAERIKE 303 >gi|227529006|ref|ZP_03959055.1| S-adenosyl-methyltransferase [Lactobacillus vaginalis ATCC 49540] gi|227351018|gb|EEJ41309.1| S-adenosyl-methyltransferase [Lactobacillus vaginalis ATCC 49540] Length = 316 Score = 185 bits (470), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 116/305 (38%), Positives = 176/305 (57%), Gaps = 13/305 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 HV VLL + +A LN P +DAT G GG+S + + + + D+D A+ Q+ Sbjct: 6 HVTVLLNEAVAGLNIRPDGTYVDATLGGGGHSSAILNQLTTGRLYSFDQDQTAIRYNQQH 65 Query: 78 MRDYKEQFS--LFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 ++ + + L + F L + GV DG+V+DLGVSS Q D RGFS++ P Sbjct: 66 LKKFIDDGRSILIEDNFRNLGTALAKNGVKSVDGIVYDLGVSSPQFDDAQRGFSYKLDAP 125 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ +SA +VVN+ + L +IL GEE+ A +IA I +RR+S P +TT +L Sbjct: 126 LDMRMNQQQALSAMNVVNEWPYEKLVKILYRYGEERFAKQIARKIERRRESKPIKTTFEL 185 Query: 192 SSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I++ + ++ + HPA ++FQA+RI VN+E+ L L A + L GG + V++F Sbjct: 186 VDVIKEAIPAAARRHGGHPAKKTFQAIRIAVNDELGALEDSLEQALELLNVGGRISVITF 245 Query: 251 HSLEDRLVKKFF---ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 SLEDRLVK F S + ++ +IP P F+ I KK ++P+QE++A N R+ Sbjct: 246 QSLEDRLVKTMFHEKVSLADELPPGLPVIPPEMQPK-FKLINKKPILPSQEELANNHRAH 304 Query: 308 SAKLR 312 SAKLR Sbjct: 305 SAKLR 309 >gi|163941658|ref|YP_001646542.1| S-adenosyl-methyltransferase MraW [Bacillus weihenstephanensis KBAB4] gi|229061524|ref|ZP_04198868.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus AH603] gi|229168659|ref|ZP_04296381.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus AH621] gi|263447259|sp|A9VU80|RSMH_BACWK RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|163863855|gb|ABY44914.1| S-adenosyl-methyltransferase MraW [Bacillus weihenstephanensis KBAB4] gi|228614815|gb|EEK71918.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus AH621] gi|228717758|gb|EEL69408.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus AH603] Length = 310 Score = 185 bits (470), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 113/303 (37%), Positives = 171/303 (56%), Gaps = 11/303 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HV VLL++ + L+ P +D T G GG+S G +IA D+D A+ +E Sbjct: 4 HVTVLLKETVDGLDIKPSGTYVDCTLGGGGHSSYLLSQLTDGGKLIAFDQDEIAIQNAKE 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 Y EQF ++ F L + + + G VDG++FDLGVSS Q+D +RGFS+ PL Sbjct: 64 KFSSYGEQFVTVKSNFRYLSEKLHELGITEVDGILFDLGVSSPQLDTPERGFSYHHDAPL 123 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM ++A DVVN + + L RI GEEK + +I I R++ +TT +L Sbjct: 124 DMRMDQDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQITRKIEAYRENKAIETTGELV 183 Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 LI++ + ++ HPA R FQA+RI VN+E++ + L SA +K GG + V++FH Sbjct: 184 ELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIDMVKPGGRVSVITFH 243 Query: 252 SLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+ K F S + ++ +IP P + + IT+K ++P+ ++ N R+RSA Sbjct: 244 SLEDRICKTTFKRNSTTPQLPQGLPIIPDEFKPKL-KLITRKPILPSDIELEENNRARSA 302 Query: 310 KLR 312 KLR Sbjct: 303 KLR 305 >gi|148379426|ref|YP_001253967.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum A str. ATCC 3502] gi|153932097|ref|YP_001383805.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum A str. ATCC 19397] gi|153935599|ref|YP_001387355.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum A str. Hall] gi|263446050|sp|A7FTX8|RSMH_CLOB1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446073|sp|A5I1T3|RSMH_CLOBH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|148288910|emb|CAL82997.1| S-adenosyl-methyltransferase [Clostridium botulinum A str. ATCC 3502] gi|152928141|gb|ABS33641.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum A str. ATCC 19397] gi|152931513|gb|ABS37012.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum A str. Hall] Length = 309 Score = 185 bits (470), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 116/302 (38%), Positives = 168/302 (55%), Gaps = 9/302 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+ VLLE+ I LN V +D T G GG+S+ K S+ +I +D+D A+ +E Sbjct: 5 HISVLLEETIDSLNIKEDGVYVDCTLGGGGHSKEILKKLSHKGKLIGIDQDTSAIKAAKE 64 Query: 77 TMRDYKEQFSL---FQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++DY+ + F S L++ DK VDG++ DLGVSS Q+D RGFS+ K PL Sbjct: 65 RLKDYENVIYVHNNFYNIDSILEELDIDK-VDGIIMDLGVSSYQLDEASRGFSYMKDAPL 123 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +SA V+N ++L +IL GEEK + +IA IV++R P +TT +L Sbjct: 124 DMRMNREENLSAYGVINNYEEEELFKILKNYGEEKFSRKIARFIVEKRTENPIETTGELV 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+K + HPA R+FQA+RI VN E++ L + + + L G L +++FHS Sbjct: 184 EIIRKAIPAKFQREGHPAKRTFQAIRIEVNKELQILNKAIEDSVNRLNKDGRLSIITFHS 243 Query: 253 LEDRLVK-KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK KF I + ITKK + P++E+ N RSRSAKL Sbjct: 244 LEDRIVKVKFKELEKPCTCPPSFPICVCGKEPQIKIITKKPIEPSKEEKEINSRSRSAKL 303 Query: 312 RA 313 R Sbjct: 304 RV 305 >gi|262831557|sp|A9M2I4|RSMH_NEIM0 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 328 Score = 185 bits (470), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 117/306 (38%), Positives = 172/306 (56%), Gaps = 10/306 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMG--SNVIALDRDPFAVSCGQE 76 H+ VLL + + L V +D TFG GG+SR ++G +I D+DP A++ +E Sbjct: 9 HITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFDKDPQAIAVAEE 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 R K + + F+ Q + G VDG +FDLG+SS QID G RGFSF+ PL Sbjct: 69 LARSDK-RVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGSRGFSFRFDAPL 127 Query: 134 DMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + G+SA++ + A+ +DL ++ GEE+ + +IA AIV +R +P TT+ L+ Sbjct: 128 DMRMDTMRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRAESPIDTTRKLA 187 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++ + V + + PATR+FQA+RIF+N E+EE+ L LK GG L V++FHS Sbjct: 188 QIVAQNVRTRERGQ-DPATRTFQAIRIFINRELEEVGAVLPQVMCRLKEGGRLAVIAFHS 246 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK+F S R A P I + + P + ++A N R+RSA L Sbjct: 247 LEDRIVKQFVKKYSQHAPLPRWAAVREADLPEPPLKIAGRALKPGEAEIAANPRARSAVL 306 Query: 312 RAGMRT 317 R RT Sbjct: 307 RVAERT 312 >gi|193214541|ref|YP_001995740.1| S-adenosyl-methyltransferase MraW [Chloroherpeton thalassium ATCC 35110] gi|263446020|sp|B3QWS9|RSMH_CHLT3 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|193088018|gb|ACF13293.1| S-adenosyl-methyltransferase MraW [Chloroherpeton thalassium ATCC 35110] Length = 321 Score = 185 bits (470), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 119/319 (37%), Positives = 175/319 (54%), Gaps = 34/319 (10%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--------GSNVIALDRDPFAV 71 H PVLLE+ + L G I DAT G G+S+ S +I +DRD A+ Sbjct: 6 HKPVLLEESVHWLVSESGMYI-DATLGGAGHSKEILHRLETQHLLSNSLLIGIDRDANAI 64 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG--------VDGVVFDLGVSSMQIDCGDR 123 + Y + + F+ L+ + G + G++ DLG+SS QID R Sbjct: 65 RAATTRLATYAAHAHILRGRFADLKLLLETNGLLDSGNHPIRGILLDLGISSHQIDAPAR 124 Query: 124 GFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GFSFQ+SGPLDMRMS + ++A++VVN + + L++I GEE++A IA IV+ R+ Sbjct: 125 GFSFQQSGPLDMRMSDTAQLTAAEVVNHYDERSLSKIFFDYGEEREAKWIARKIVEARKQ 184 Query: 183 APFQTTQDLSSLIQKTVYFSKNNRIHPA------TRSFQALRIFVNNEIEELAQGLRSAE 236 P +TT L+ LI++ + NR P R FQA+RI VN E++EL L++A Sbjct: 185 TPLETTAALALLIRQNL-----NRKSPVEQTKTLARIFQAIRIEVNGELDELKAVLQAAH 239 Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFF---ASRSGKVMAVRHMIPSNAHPAVFQSITKKVV 293 + L G L+V+S+HSLEDR+VK+FF AS V +P A + +TKK V Sbjct: 240 EVLSEKGRLVVISYHSLEDRIVKQFFNECASEDWGPKGVVLDVPIKT--ATMKILTKKPV 297 Query: 294 VPTQEDVAFNRRSRSAKLR 312 + ++E++ N R+RSAKLR Sbjct: 298 LASEEEIQENSRARSAKLR 316 >gi|331090606|ref|ZP_08339457.1| ribosomal RNA small subunit methyltransferase H 2 [Lachnospiraceae bacterium 2_1_46FAA] gi|330401046|gb|EGG80641.1| ribosomal RNA small subunit methyltransferase H 2 [Lachnospiraceae bacterium 2_1_46FAA] Length = 311 Score = 185 bits (470), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 112/305 (36%), Positives = 171/305 (56%), Gaps = 13/305 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 +H VLLE+ + LN P + +D T G GG++ CK S+ I +D+D A+ Sbjct: 4 EHKSVLLEETVNGLNIKPDGIYVDGTLGGGGHAFEVCKQLSDKGSFIGIDQDEAAIEAAG 63 Query: 76 ETMRDYKEQFSLFQATFS----QLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +RD+ E+ ++ ++ + QLQ DK VDG+V DLGVSS Q+D +RGFS++ Sbjct: 64 IRLRDFGERVTIVRSNYCDMKLQLQKLGIDK-VDGIVLDLGVSSYQLDTAERGFSYRVDV 122 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM ++A D+VN + +L RI+ GE+K A IA IV R+ +TT Sbjct: 123 PLDMRMDRRQEMTAKDIVNTYSEMELYRIIRDYGEDKFAKNIAKHIVLEREKGSIETTGQ 182 Query: 191 LSSLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L +I++ + F KN HPA R+FQA+RI +N E++ L L L G + ++ Sbjct: 183 LIEIIKRAIPMKFQKNGG-HPAKRTFQAIRIELNRELDVLRDSLDEMIDMLNENGRICII 241 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+VK F H + + + + IT+K ++P+ E++ +N RS+ Sbjct: 242 TFHSLEDRIVKSIFRRNENPCTCPSHFPVCVCGNESKGKVITRKPILPSAEELEYNSRSK 301 Query: 308 SAKLR 312 SAKLR Sbjct: 302 SAKLR 306 >gi|121595969|ref|YP_987865.1| S-adenosyl-methyltransferase MraW [Acidovorax sp. JS42] gi|263433389|sp|A1WC14|RSMH_ACISJ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|120608049|gb|ABM43789.1| S-adenosyl-methyltransferase MraW [Acidovorax sp. JS42] Length = 308 Score = 185 bits (470), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 124/306 (40%), Positives = 176/306 (57%), Gaps = 16/306 (5%) Query: 20 HVPVLL-EKVIALLNP--APGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSC 73 H VLL E V ALL AP +D TFG GG+SR ++G ++A D+D A+ Sbjct: 7 HTTVLLDEAVHALLGDGDAPAGTFVDGTFGRGGHSRLILQRLGPQGRLVAFDKDTEAI-- 64 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 Q R +FS+ FS L + +P V GV+ DLGVSS QID RGFSF+ GPL Sbjct: 65 -QAAARITDARFSIRHQGFSHLGE-LPAASVSGVLLDLGVSSPQIDDPQRGFSFRFDGPL 122 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR-QSAPFQTTQDL 191 DMRM + G S ++ + A + ++ GEE+ A IA AIV RR + P +T +L Sbjct: 123 DMRMDTTRGQSVAEWLADAETAQIAEVIRDYGEERFAGPIAKAIVARRTERGPIASTAEL 182 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ V + + +PATR+FQALRIF+N E+EEL Q L + L+ GG L+V+SFH Sbjct: 183 ADIVAGAVKTREPGQ-NPATRTFQALRIFINAELEELQQALEGSLHVLRPGGRLVVISFH 241 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+VK+F A S +V R + P +++ + + P+ ++VA N R+RSA + Sbjct: 242 SLEDRIVKQFIAQHSKEVYDRRAPF-APPQPMRLRALER--IKPSTDEVAANARARSAVM 298 Query: 312 RAGMRT 317 R RT Sbjct: 299 RVAERT 304 >gi|168182383|ref|ZP_02617047.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum Bf] gi|237794792|ref|YP_002862344.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum Ba4 str. 657] gi|263446362|sp|C3KV90|RSMH_CLOB6 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|182674378|gb|EDT86339.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum Bf] gi|229262949|gb|ACQ53982.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum Ba4 str. 657] Length = 309 Score = 185 bits (470), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 116/302 (38%), Positives = 168/302 (55%), Gaps = 9/302 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+ VLLE+ I LN V +D T G GG+S+ K S+ +I +D+D A+ +E Sbjct: 5 HISVLLEETIDSLNIKEDGVYVDCTLGGGGHSKEILKKLSHKGKLIGIDQDTSAIKAAKE 64 Query: 77 TMRDYKEQFSL---FQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++DY+ + F S L++ DK VDG++ DLGVSS Q+D RGFS+ K PL Sbjct: 65 RLKDYENVIYVHNNFYNIDSILEELDIDK-VDGIIMDLGVSSYQLDEASRGFSYMKDAPL 123 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +SA V+N ++L +IL GEEK + +IA IV++R P +TT +L Sbjct: 124 DMRMNREENLSAYGVINNYKEEELFKILKNYGEEKFSRKIARFIVEKRTENPIETTGELV 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+K + HPA R+FQA+RI VN E++ L + + + L G L +++FHS Sbjct: 184 EIIRKAIPAKFQREGHPAKRTFQAIRIEVNKELQILNKAIEDSVNRLNKDGRLSIITFHS 243 Query: 253 LEDRLVK-KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK KF I + ITKK + P++E+ N RSRSAKL Sbjct: 244 LEDRIVKVKFKELEKPCTCPPSFPICVCGKEPQIKIITKKPIEPSKEEKEINSRSRSAKL 303 Query: 312 RA 313 R Sbjct: 304 RV 305 >gi|330446835|ref|ZP_08310486.1| S-adenosyl-methyltransferase MraW [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491026|dbj|GAA04983.1| S-adenosyl-methyltransferase MraW [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 315 Score = 185 bits (470), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 122/315 (38%), Positives = 180/315 (57%), Gaps = 23/315 (7%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQ 75 +HV VLL + + L P + +D TFG GG+SR ++G N + ++DRDP A++ Q Sbjct: 6 EHVSVLLHESVDGLAIKPDGIYIDGTFGRGGHSRLILSQLGENGRLYSIDRDPQAIAEAQ 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +F + FS ++ Y+ + VDGV+ DLGVSS Q+D +RGFSF + G Sbjct: 66 KI---NDPRFEIIHGPFSGMEKYMEARDLIGRVDGVLLDLGVSSPQLDDAERGFSFMRDG 122 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---PFQT 187 PLDMRM SG SA++ + +A D+ +L GEE+ A RIA IV+ R++ P Sbjct: 123 PLDMRMDPTSGQSAAEWLAEAEADDIAWVLKEFGEERFAKRIARGIVEHRENPEKEPLTR 182 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T+ L+SLI + F K+ HPATRSFQA+RI++N+E++E+ L A L G L V Sbjct: 183 TRQLASLIAEVSPF-KDKHKHPATRSFQAIRIYINSELDEIQTALNGAVNILAPEGRLSV 241 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH------PAVFQSITKKVVVPTQEDVA 301 +SFHSLEDR+VK+F S K V +P A +++ K + P+Q ++ Sbjct: 242 ISFHSLEDRMVKRFIRKES-KGPEVPAGLPLTEEQIKALGSAALKTVG-KAIKPSQTELG 299 Query: 302 FNRRSRSAKLRAGMR 316 N R+RS+ LR R Sbjct: 300 HNTRARSSVLRLAER 314 >gi|313622989|gb|EFR93285.1| S-adenosyl-methyltransferase MraW [Listeria innocua FSL J1-023] Length = 312 Score = 185 bits (470), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 106/303 (34%), Positives = 175/303 (57%), Gaps = 11/303 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VLL + + +L P + +DAT G G+S ++ A D+D A+ + Sbjct: 4 HETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDNAKI 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + +Y ++ + ++ F +++ + ++G VDG+++DLGVSS Q+D +RGFS+ + L Sbjct: 64 KLAEYSDKVTFIKSNFRYMKETLNERGIEAVDGILYDLGVSSPQLDERERGFSYHQDAAL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM ++A VVN+ + +DL RI GEEK + +IA I +RR+ P +TT +L Sbjct: 124 DMRMDQEQELTAKKVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTGELV 183 Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + ++ HP R+FQA+RI VN+E+ + L +A LK GG + V++FH Sbjct: 184 DIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLENALTLLKPGGRISVITFH 243 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+ K F A++ + +IP P F+ T+K +VP++E++ N R+RSA Sbjct: 244 SLEDRITKHLFQEATKGPDLPPGLPVIPDEYKPD-FKLATRKPIVPSEEELEQNNRARSA 302 Query: 310 KLR 312 KLR Sbjct: 303 KLR 305 >gi|28378805|ref|NP_785697.1| cell division protein MraW [Lactobacillus plantarum WCFS1] gi|38258035|sp|Q88V76|RSMH_LACPL RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|28271642|emb|CAD64548.1| cell division protein MraW [Lactobacillus plantarum WCFS1] Length = 319 Score = 185 bits (470), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 117/307 (38%), Positives = 169/307 (55%), Gaps = 13/307 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQ 75 +H VLL + IA LN P + +D T G GG+SR + + ++ + D+D A+ Q Sbjct: 5 EHTTVLLHEAIAALNVRPDGIYVDCTLGGGGHSREILQQLGLEGHLYSFDQDQTAIDYNQ 64 Query: 76 ETMRDYKE--QFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + Y E Q + ++ F+ L+ + +G VDGVV+DLGVSS Q D RGFS+Q Sbjct: 65 SNLATYLERGQVTFIKSNFANLKTELNARGLDHVDGVVYDLGVSSPQFDDAARGFSYQHD 124 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM S ++A VVN DL RI GEEK + ++A I + R P TT Sbjct: 125 APLDMRMDQSQKLTAQTVVNTWPYADLVRIFYRYGEEKFSKQVARLIERERAVQPIVTTG 184 Query: 190 DLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L +I+ + ++ HPA R FQA+RI VNNE+ L L A + G + V+ Sbjct: 185 QLVEIIKNAIPARARRTGGHPAKRVFQAIRIAVNNELGVLETSLEQAIDLINVHGRVSVI 244 Query: 249 SFHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 +F SLEDRLVK F S ++ +IP+ P ++ +++K VVP+ ++ NRR+ Sbjct: 245 TFQSLEDRLVKTIFKEHSDLPELPPGLPVIPAEMQPD-YRLVSRKPVVPSDAEIEANRRA 303 Query: 307 RSAKLRA 313 RSAKLRA Sbjct: 304 RSAKLRA 310 >gi|121998878|ref|YP_001003665.1| S-adenosyl-methyltransferase MraW [Halorhodospira halophila SL1] gi|263456068|sp|A1WYV1|RSMH_HALHL RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|121590283|gb|ABM62863.1| S-adenosyl-methyltransferase MraW [Halorhodospira halophila SL1] Length = 324 Score = 185 bits (470), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 120/308 (38%), Positives = 181/308 (58%), Gaps = 15/308 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMG--SNVIALDRDPFAVSCGQE 76 H PVL +A L+ P +DAT+G GG++R ++G + DRDP A++ +E Sbjct: 19 HRPVLYGAALAALDVRPDGCYVDATYGRGGHARGILERLGPQGRLWVADRDPEALAHARE 78 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 T+ D + ++ A ++L + ++G VDG++ DLG+SS Q+D DRGFSFQ+ GP Sbjct: 79 TLAD-DPRCTVLGAELAELPRLLAEQGLAAGVDGLLADLGISSPQVDNPDRGFSFQRDGP 137 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA-PFQTTQD 190 LDMRM +G SA+ ++ + + +D+ +L LGEE+ A RIA AIV R + P +TT Sbjct: 138 LDMRMDPTTGESAAALLERLSARDIAGVLRQLGEERHAGRIARAIVAARDAGDPPRTTLA 197 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ L+++ V + R HPATR+FQALRI VN+E+ +L + L L GG L V++F Sbjct: 198 LARLVEQAVPRREPGR-HPATRTFQALRIAVNDELGQLDRFLEGVIDLLAPGGRLAVIAF 256 Query: 251 HSLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 HSLEDR VK+F AS G + + P+ P + + + + + +VA N R+RS Sbjct: 257 HSLEDRRVKRFIRRASSVGDLPPSVPVPPAGCQPR-LRPLGRDLRA-DEGEVAGNPRARS 314 Query: 309 AKLRAGMR 316 A LR R Sbjct: 315 AVLRVAER 322 >gi|253576122|ref|ZP_04853454.1| MraW methylase MraW [Paenibacillus sp. oral taxon 786 str. D14] gi|251844465|gb|EES72481.1| MraW methylase MraW [Paenibacillus sp. oral taxon 786 str. D14] Length = 324 Score = 185 bits (470), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 116/309 (37%), Positives = 172/309 (55%), Gaps = 16/309 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76 H+ VL E+ L P + +D T G GG+S S G +IA D+D +A+ +E Sbjct: 4 HITVLKEEATEGLRIKPDGIYVDCTLGGGGHSSVILSKLGPGGRLIAFDQDDWALDNAKE 63 Query: 77 TMRDYKEQFSLFQATFSQLQ------DYVPDKG----VDGVVFDLGVSSMQIDCGDRGFS 126 + Y ++ +L ++ F ++ + VP VDGV+FDLGVSS Q D G+RGFS Sbjct: 64 RLAAYADKLTLVKSNFRYIEQKLREIEGVPQLNGVPQVDGVLFDLGVSSPQFDEGERGFS 123 Query: 127 FQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 + PLDMRM S ++A ++VN +++ RIL GEEK + IA I RR P Sbjct: 124 YNADAPLDMRMDQSAALTAREIVNTWPEREIARILFQYGEEKFSRWIAKVIADRRAQEPI 183 Query: 186 QTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 +TT L LI++ + ++ HPA RSFQALRI VN+E+ +GL +A + L G Sbjct: 184 ETTGQLVELIKEGIPAAARRTGGHPAKRSFQALRIAVNDELGAFEEGLHAAIRCLAPEGR 243 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFN 303 + V++FHSLEDR+ K+ FAS K + + I +K +VP+++++A N Sbjct: 244 VSVITFHSLEDRICKQIFASYVEKCTCPPDFPMCVCGGKGSLKLINRKPIVPSEQELADN 303 Query: 304 RRSRSAKLR 312 R+RSAKLR Sbjct: 304 PRARSAKLR 312 >gi|23335461|ref|ZP_00120697.1| COG0275: Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Bifidobacterium longum DJO10A] gi|23465877|ref|NP_696480.1| S-adenosyl-methyltransferase MraW [Bifidobacterium longum NCC2705] gi|189439036|ref|YP_001954117.1| S-adenosyl-methyltransferase MraW [Bifidobacterium longum DJO10A] gi|227547548|ref|ZP_03977597.1| S-adenosyl-methyltransferase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239621159|ref|ZP_04664190.1| S-adenosyl-methyltransferase [Bifidobacterium longum subsp. infantis CCUG 52486] gi|312132476|ref|YP_003999815.1| s-adenosylmethionine-dependent membrane protein [Bifidobacterium longum subsp. longum BBMN68] gi|322689514|ref|YP_004209248.1| S-adenosyl-methyltransferase [Bifidobacterium longum subsp. infantis 157F] gi|322691469|ref|YP_004221039.1| S-adenosyl-methyltransferase [Bifidobacterium longum subsp. longum JCM 1217] gi|42558985|sp|Q8G4R0|RSMH_BIFLO RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263445917|sp|B3DQM3|RSMH_BIFLD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|23326579|gb|AAN25116.1| widely conserved hypothetical protein in upf0117 [Bifidobacterium longum NCC2705] gi|189427471|gb|ACD97619.1| Putative S-adenosylmethionine-dependent membrane protein [Bifidobacterium longum DJO10A] gi|227211958|gb|EEI79854.1| S-adenosyl-methyltransferase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239515620|gb|EEQ55487.1| S-adenosyl-methyltransferase [Bifidobacterium longum subsp. infantis CCUG 52486] gi|311773403|gb|ADQ02891.1| Putative S-adenosylmethionine-dependent Membrane protein [Bifidobacterium longum subsp. longum BBMN68] gi|320456325|dbj|BAJ66947.1| S-adenosyl-methyltransferase [Bifidobacterium longum subsp. longum JCM 1217] gi|320460850|dbj|BAJ71470.1| S-adenosyl-methyltransferase [Bifidobacterium longum subsp. infantis 157F] Length = 359 Score = 185 bits (470), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 119/306 (38%), Positives = 167/306 (54%), Gaps = 13/306 (4%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74 H+PVLL+ + L+ PA + +D T G G+S +F K + +I +DRD A+ Sbjct: 8 HLPVLLDDCVNLMAPALEHENAIAVDCTLGLAGHSIAFLKAAPQARLIGIDRDSEALGLA 67 Query: 75 QETMR--DYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK 129 E M ++F A F QL + D+ VD V DLG+SS+QID DRGFS+ Sbjct: 68 TERMEREGLADRFIPVHAAFDQLDQVLADQDIERVDAVFMDLGLSSLQIDETDRGFSYSH 127 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM S ++A ++ + +L RI GEE+ + +IA AIV RR PF TT Sbjct: 128 DAPLDMRMDVSQPLTAERILATYDAAELVRIFKEYGEERFSRQIARAIVARRDKEPFTTT 187 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ L+ + V + +PA R FQALRI VN E+++LA L A L GG L+V Sbjct: 188 AQLNRLVDEVVPQAHRPAGNPAKRVFQALRIEVNGELDKLASTLPQAANRLHVGGRLVVE 247 Query: 249 SFHSLEDRLVKKFFA-SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 S+HSLED+ VK F A V A +IP +A P F +T+ + + ++A N RS Sbjct: 248 SYHSLEDKTVKSFMAQGLRVDVPAGLPVIPPDAQP-FFTDLTRGAIKADEHEIAANPRSA 306 Query: 308 SAKLRA 313 S +LRA Sbjct: 307 SVRLRA 312 >gi|110598571|ref|ZP_01386839.1| methyltransferase [Chlorobium ferrooxidans DSM 13031] gi|110339805|gb|EAT58312.1| methyltransferase [Chlorobium ferrooxidans DSM 13031] Length = 329 Score = 185 bits (470), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 118/317 (37%), Positives = 184/317 (58%), Gaps = 31/317 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYS----RSFCKMG----SNVIALDRDPFAV 71 HVPVL ++++A L PG V +D T G GG+S R+ K G S +I +D+D A+ Sbjct: 7 HVPVLADEIVAFLVQKPG-VYVDGTLGGGGHSLAILRALEKAGYLESSLLIGIDQDDAAL 65 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYV---------PDKGVDGVVFDLGVSSMQIDCGD 122 +ET+R+++ L + F ++ + P K V G++ DLGVSS QID + Sbjct: 66 RKAEETLREFRTNSVLVKGNFEEISGVIQRVCSERERPRK-VSGILLDLGVSSFQIDSAE 124 Query: 123 RGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFS+ ++GPLDMRM SG SA+D+VN + ++L +I GEE ++ I+ AIV RQ Sbjct: 125 RGFSYLRNGPLDMRMDSSGQRSAADIVNTCDERELAQIFYRYGEEPRSRAISRAIVGYRQ 184 Query: 182 S-APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 P TT++L+ +I + + + +N I +R FQALRI VN E++ L + L ++L+ Sbjct: 185 KHGPISTTEELAGII-RAIAYGGDNVIKTLSRVFQALRIEVNRELDVLREALCDGIESLE 243 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRS-----GKVMAVRHMIPSNAHPAVFQSITKKVVVP 295 G + V+S+HSLEDR+VK FA + K + +R + A + +T+K ++ Sbjct: 244 DHGRMAVISYHSLEDRIVKTVFADSAREDWGPKGVGLREPLKRGA----IRLVTRKPLIA 299 Query: 296 TQEDVAFNRRSRSAKLR 312 + + A N R+RSAKLR Sbjct: 300 SSGETASNSRARSAKLR 316 >gi|329770446|ref|ZP_08261828.1| ribosomal RNA small subunit methyltransferase H [Gemella sanguinis M325] gi|328836569|gb|EGF86229.1| ribosomal RNA small subunit methyltransferase H [Gemella sanguinis M325] Length = 310 Score = 185 bits (470), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 112/303 (36%), Positives = 171/303 (56%), Gaps = 8/303 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77 H VLLE+ I LN + +D T G G+S K + A D+D A+ + Sbjct: 4 HYSVLLEEAIEGLNIKDDGIYVDCTLGGAGHSLEILKKLTTGKLYAFDQDNVALENAKIK 63 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + +Y ++ ++ F L++ + ++ V DGV++DLGVSS Q+D +RGFS+ LD Sbjct: 64 LSEYADKVVFIKSNFENLKEKLAEQNVYEVDGVLYDLGVSSPQLDTPERGFSYNYDTRLD 123 Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM + ISA +VVN+ + DL RI GEEK + +IA I K+R+ AP +TT L Sbjct: 124 MRMDTDASISAYEVVNEYSYHDLVRIFYRYGEEKFSKQIARNIEKKRELAPIETTFQLVD 183 Query: 194 LIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I++++ +K HPA R FQA+RI VNNE+ L A +K GG + V++FHS Sbjct: 184 IIKESIPAAKRRTGGHPAKRVFQAIRIAVNNELSVFENSLEQAIDIVKVGGRISVITFHS 243 Query: 253 LEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+ K+ F S + +++ I N + + IT+K + P+ +++ N RSRSAKL Sbjct: 244 LEDRICKQIFNSYAKNKEIPKNLPILPNESLSKLKLITRKPICPSDKELEENNRSRSAKL 303 Query: 312 RAG 314 R Sbjct: 304 RVA 306 >gi|297588285|ref|ZP_06946928.1| S-adenosyl-methyltransferase MraW [Finegoldia magna ATCC 53516] gi|297573658|gb|EFH92379.1| S-adenosyl-methyltransferase MraW [Finegoldia magna ATCC 53516] Length = 312 Score = 185 bits (470), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 108/308 (35%), Positives = 167/308 (54%), Gaps = 9/308 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 HVP+LL + I LN GK+ +D T G G+SR K N +I D+D A++ +E Sbjct: 5 HVPILLNECIENLNIRDGKIYVDCTVGGAGHSREIAKRIGNGKLICFDQDEDALTVAKER 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 +++Y ++ + F ++ + + G VDG++ D+GVSS QID RGFS+ LD Sbjct: 65 LKEYGDKVIFIKDNFKNIKSDLQNIGIEKVDGILMDIGVSSYQIDEDSRGFSYMHDAVLD 124 Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM + I+A D+VN + +DL I+ EEK A RIA I R+ P TT +L Sbjct: 125 MRMDQTNPITAKDIVNTYSQEDLENIIFKYSEEKWAKRIAEFICNEREVKPINTTFELVE 184 Query: 194 LIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+K + N + H A ++FQA+RI VN E++ L Q + L G + +++FH Sbjct: 185 VIEKAIPKKVRMNQKGHSAKKTFQAIRIEVNKELDVLEQAVGDCIDLLNPEGRICIITFH 244 Query: 252 SLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLED++ K F R G + + H + IT+K + P+ E++ N R+RSAK Sbjct: 245 SLEDKICKDIFKQRQKGCICPPEIPVCVCNHKPEIKIITRKPIEPSTEELKQNSRARSAK 304 Query: 311 LRAGMRTV 318 LR + + Sbjct: 305 LRVAEKII 312 >gi|237756569|ref|ZP_04585091.1| S-adenosyl-methyltransferase MraW [Sulfurihydrogenibium yellowstonense SS-5] gi|237691269|gb|EEP60355.1| S-adenosyl-methyltransferase MraW [Sulfurihydrogenibium yellowstonense SS-5] Length = 293 Score = 185 bits (469), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 110/305 (36%), Positives = 181/305 (59%), Gaps = 22/305 (7%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76 +H VL +V+ G + +DAT G GG+S K N+ I LD+D FA+ +E Sbjct: 3 EHYSVLHREVLEFSKLVAGGIFVDATVGGGGHSYLILKQNPNLKLIGLDKDDFALKVAKE 62 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +++++++ +L +++F L + + ++G++FD GVS+ Q+ +RGFSFQ+ L Sbjct: 63 RLKEFEDRITLLKSSFKDLDKVLQSLQIREINGILFDFGVSTFQLKL-ERGFSFQREEFL 121 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + ++A DVVN +DL I+ GEEK AS+IA +I + R+ +TT++L+ Sbjct: 122 DMRMDTTQKLTAYDVVNYYREQDLYNIIKTYGEEKFASKIAKSIAEYRKKKKIETTKELA 181 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++ + + ++ +IHPATR+FQA+RI VNNE++++ +GL A L G ++ +SFH Sbjct: 182 DIVYRCYPPNLRHGKIHPATRTFQAIRIEVNNELKDIEEGLEKAINLLAKNGTIMAISFH 241 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+VK F K ++ + + +TKK + P+ E++ N SRSAKL Sbjct: 242 SLEDRIVKNTFK----KYKELKFL----------EILTKKPITPSDEEIKENPASRSAKL 287 Query: 312 RAGMR 316 R G R Sbjct: 288 RVGRR 292 >gi|325128828|gb|EGC51687.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis N1568] Length = 328 Score = 185 bits (469), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 116/306 (37%), Positives = 172/306 (56%), Gaps = 10/306 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMG--SNVIALDRDPFAVSCGQE 76 H+ VLL + + L V +D TFG GG+SR ++G +I D+DP A++ +E Sbjct: 9 HITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFDKDPQAIAVAEE 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 R K + + F+ Q + G VDG +FDLG+SS QID G RGFSF+ PL Sbjct: 69 LARSDK-RVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGSRGFSFRFDAPL 127 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + G+SA++ + + +DL ++ GEE+ + +IA AIV +R +P TT+ L+ Sbjct: 128 DMRMDTTRGMSAAEWIAVVSEQDLHEVIKNYGEERFSRQIARAIVAQRAESPIDTTRKLA 187 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++ + V + + PATR+FQA+RIF+N E+EE+ L LK GG L V++FHS Sbjct: 188 QIVAQNVRTRERGQ-DPATRTFQAVRIFINRELEEVGAVLPQVMCRLKEGGRLAVIAFHS 246 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK+F S R A P + I + + P + ++A N R+RSA L Sbjct: 247 LEDRIVKQFVKKYSQHAPLPRWAAVREADLPELPLKIVGRALKPGEAEIAANPRARSAVL 306 Query: 312 RAGMRT 317 R RT Sbjct: 307 RVAERT 312 >gi|317014121|gb|ADU81557.1| 16S rRNA m(4)C1402 methyltranserfase [Helicobacter pylori Gambia94/24] Length = 308 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 120/302 (39%), Positives = 178/302 (58%), Gaps = 16/302 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVSCGQET 77 H VLL++V+ P V++D T G GG+S++ K +I +D+D FA +E Sbjct: 8 HQSVLLQEVLQAFAPLEEGVLIDCTLGLGGHSKAILSQKPHLKLIGIDKDKFAQEIAKER 67 Query: 78 MRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++ ++ ++ L F++ ++ + G + GV+ DLGVSS+Q+D +RGF+F S LD Sbjct: 68 LKAFEGRYHLLSGGFAKRFKEALEIHGERIKGVLVDLGVSSLQLDDDNRGFNFH-SHALD 126 Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM S ++A V+N V L +I GE K+ +IAH IV+RR PF+ +DLS Sbjct: 127 MRMDLESELNAQKVINSYPVVALEKIFRDYGEIKEYKKIAHKIVERRAKKPFKDAKDLSE 186 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 + SKN +IHPAT FQA+RI VN+E+EEL + L+ A + LK G +L V+SFHSL Sbjct: 187 FLSS---LSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCA-RNLK-GAILCVISFHSL 241 Query: 254 EDRLVKKFFASRSGKVM---AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 ED LVK F + + + SN H A+ +TKK + P+ E++ NRRSRSAK Sbjct: 242 EDALVKNAFKDYAKNCICDPSSFKCACSNNH-ALGAILTKKPITPSPEEIKNNRRSRSAK 300 Query: 311 LR 312 +R Sbjct: 301 MR 302 >gi|94970665|ref|YP_592713.1| S-adenosyl-methyltransferase MraW [Candidatus Koribacter versatilis Ellin345] gi|263433351|sp|Q1IKG1|RSMH_ACIBL RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|94552715|gb|ABF42639.1| methyltransferase [Candidatus Koribacter versatilis Ellin345] Length = 313 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 127/310 (40%), Positives = 181/310 (58%), Gaps = 30/310 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGS--NVIALDRDPFAVSCGQE 76 HV VL ++ I L G LDAT G GG+S K +G+ ++IALD+D A+ + Sbjct: 20 HVSVLSQEAIDFLAIRRGGTYLDATLGLGGHSYEIAKRLGAQGHLIALDKDTNALEMARR 79 Query: 77 TMR----DYKE---QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 + D KE Q +L A+F++++ ++ K +DGV+ DLG+SSMQ+ RGFSFQ Sbjct: 80 RLEQVPDDLKEDWPQITLLHASFAEMKQHIASKSLDGVLADLGISSMQLQDAGRGFSFQA 139 Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM+ G ++A VVN + ++L ++ GEE+++ RIA AI + R P +TT Sbjct: 140 EGPLDMRMNPHGDLTAEQVVNHTSERELADVIYEFGEERRSRRIARAICRAR---PIRTT 196 Query: 189 QDLSSLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 L+ +I RIHPAT++FQALRIFVN+E+++L + L S L G L+ Sbjct: 197 AHLAQVISVAARPMNQAERRIHPATKTFQALRIFVNHELDDLKELLASVPSRLVPRGRLV 256 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+SFHSLEDR+VK R G A ++ +TKK V T+E++ N RS Sbjct: 257 VISFHSLEDRIVKDSL--RDG------------ASAGKYELLTKKPVTATEEEIDRNPRS 302 Query: 307 RSAKLRAGMR 316 RSAKLRA R Sbjct: 303 RSAKLRAAAR 312 >gi|313607742|gb|EFR83963.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL F2-208] Length = 312 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 107/303 (35%), Positives = 174/303 (57%), Gaps = 11/303 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VLL + + +L + +DAT G G+S ++ A D+D A+ + Sbjct: 4 HETVLLHETVDMLEVKSDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDNAKI 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + DY ++ + +A F +++ + ++G VDG+++DLGVSS Q+D +RGFS+ + L Sbjct: 64 KLADYSDKVTFIKANFRDMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQDAAL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM ++A VVN+ + +DL RI GEEK + +IA I +RR+ P +TT +L Sbjct: 124 DMRMDQEQELTAKTVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTGELV 183 Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + ++ HP R+FQA+RI VN+E+ + L A LK GG + V++FH Sbjct: 184 DIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLLKPGGRISVITFH 243 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+ K+ F A++ + +IP P F+ T+K +VP++E++ N R+RSA Sbjct: 244 SLEDRITKQLFQEATKGPDLPPGLPVIPDEYKPD-FKLATRKPIVPSEEELEQNNRARSA 302 Query: 310 KLR 312 KLR Sbjct: 303 KLR 305 >gi|312869527|ref|ZP_07729682.1| S-adenosyl-methyltransferase MraW [Lactobacillus oris PB013-T2-3] gi|311094974|gb|EFQ53263.1| S-adenosyl-methyltransferase MraW [Lactobacillus oris PB013-T2-3] Length = 317 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 115/305 (37%), Positives = 175/305 (57%), Gaps = 13/305 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77 HV VLL++ +A LN P +D T G GG++ + ++ + D+D A+ ++ Sbjct: 8 HVTVLLQEAVAGLNVQPAGTYVDGTLGGGGHTSAILGQLTTGHLYSFDQDETAIDYNRDR 67 Query: 78 MRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 ++D + +L + F LQ + +GV DGV++DLGVSS Q D RGFS+Q P Sbjct: 68 LKDALAAGKLTLIEDNFRHLQKDLAAQGVHKVDGVLYDLGVSSPQFDDAQRGFSYQLDAP 127 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ +SA +VVN+ + L RIL GEE+ A +IA I +RRQ P +TT +L Sbjct: 128 LDMRMNQGQSLSAMEVVNEWPYERLVRILYRYGEERFAKQIARKIEQRRQREPIRTTFEL 187 Query: 192 SSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I++ + ++ + HPA +SFQA+RI VN+E+ L + L A L GG + V++F Sbjct: 188 VDVIKEAIPAAARRHGGHPAKKSFQAIRIAVNDELGALEESLEQALAMLAVGGRISVITF 247 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH---MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 SLEDRLVK F +S + +IP P F+ I +K ++P +++A N R+ Sbjct: 248 QSLEDRLVKTMFKEKSSISDDLPQGLPVIPEGMSPD-FKLINRKPILPGTQELAENHRAH 306 Query: 308 SAKLR 312 SAKLR Sbjct: 307 SAKLR 311 >gi|229174585|ref|ZP_04302115.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus MM3] gi|228608890|gb|EEK66182.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus MM3] Length = 310 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 113/303 (37%), Positives = 171/303 (56%), Gaps = 11/303 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HV VLL++ + L+ P +D T G GG+S G +IA D+D A+ +E Sbjct: 4 HVTVLLKETVDGLDIKPDGTYVDCTLGGGGHSSYLLSQLTEGGRLIAFDQDEIAIQNAKE 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 Y EQF ++ F L + + + G VDG++FDLGVSS Q+D +RGFS+ PL Sbjct: 64 KFSSYGEQFITVKSNFRYLSEKLQELGITEVDGILFDLGVSSPQLDTPERGFSYHHDAPL 123 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM ++A DVVN + + L RI GEEK + +I I R++ +TT +L Sbjct: 124 DMRMDQDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIVRKIEAYRENKAIETTGELV 183 Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 LI++ + ++ HPA R FQA+RI VN+E++ + L SA +K GG + V++FH Sbjct: 184 ELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIDMVKPGGRVSVITFH 243 Query: 252 SLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+ K F S + ++ +IP P + + IT+K ++P+ ++ N R+RSA Sbjct: 244 SLEDRICKTTFKRNSTTPQLPPGLPIIPDEFKPKL-KLITRKPILPSDIELEENNRARSA 302 Query: 310 KLR 312 KLR Sbjct: 303 KLR 305 >gi|254303471|ref|ZP_04970829.1| cell envelope biogenesis S-adenosylmethionine (SAM)-dependent methyltransferase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323663|gb|EDK88913.1| cell envelope biogenesis S-adenosylmethionine (SAM)-dependent methyltransferase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 314 Score = 184 bits (468), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 109/313 (34%), Positives = 177/313 (56%), Gaps = 20/313 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+PVL + + L P + +D T G G +S + S+ +I++D+D A+ ++ Sbjct: 9 HIPVLYYETLDNLVKNPDGIYIDCTLGGGSHSEGILERLSDKGLLISIDQDTNAIEYSKK 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + ++ +F+ F + GVD G++ D+GVSS Q+D DRGFS++ L Sbjct: 69 RLEKFGSKWKVFKGNFENIDTIAYMAGVDKVDGILMDIGVSSKQLDDPDRGFSYRYDVKL 128 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ ISA DVVN + + L++I+ GEE+ A +IA IV+ R+S+P + T DL Sbjct: 129 DMRMNTEQKISAYDVVNTYSEEQLSKIIFEYGEERHARKIAKLIVEERKSSPIEKTSDLI 188 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +LI++ + + HPA ++FQA+RI VN E+E L + A + LK GG L +++FHS Sbjct: 189 TLIKRA--YPERASKHPAKKTFQAIRIEVNRELEVLENAMSKAVELLKVGGRLAIITFHS 246 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV------FQSITKKVVVPTQEDVAFNRRS 306 LEDR+VK F K +A P + V F+ +TKK ++P +++ N R+ Sbjct: 247 LEDRIVKNKF-----KDLATACKCPKDIPICVCGGVKKFEIVTKKPIIPIDDELKNNNRA 301 Query: 307 RSAKLRAGMRTVE 319 S+KLR R ++ Sbjct: 302 HSSKLRILERILD 314 >gi|158522805|ref|YP_001530675.1| S-adenosyl-methyltransferase MraW [Desulfococcus oleovorans Hxd3] gi|263446302|sp|A8ZXX1|RSMH_DESOH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|158511631|gb|ABW68598.1| S-adenosyl-methyltransferase MraW [Desulfococcus oleovorans Hxd3] Length = 312 Score = 184 bits (468), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 116/306 (37%), Positives = 175/306 (57%), Gaps = 12/306 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H V+ ++ +ALLN GK++ D T G GG++ + +I +D+DP A++ ++ Sbjct: 5 HTSVMPDQAVALLNCEKGKIVADCTLGGGGHAVRIAEQILPEGLLIGIDKDPAALAHAKQ 64 Query: 77 TMRDYKEQFSLFQ---ATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + E+ + A FS++ + VDGV+ DLG+S QID RGFSF+K PL Sbjct: 65 ALSVFGERVLYVRGNFADFSEILSSLDIPAVDGVLLDLGLSFYQIDGSGRGFSFRKDEPL 124 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM ++A+D+VNQ+ DL RI GEE+ ASRIA IV+ R+SAP T+ L+ Sbjct: 125 DMRMDPDQSLTAADLVNQSAEADLVRIFREFGEERYASRIARRIVEARRSAPVTTSGQLA 184 Query: 193 SLIQKTVYFSKNN---RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 ++ Y +K +I PATR F ALRI VN E+E L + L + +K GG + V+S Sbjct: 185 RIVTDA-YPAKERHTAKIDPATRVFMALRIAVNTELENLERFLDTVIDRIKPGGRICVLS 243 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK+ + + + S + + +T+K +VPT E+V N +RS Sbjct: 244 FHSLEDRMVKRRMKLWEKACVCPPGLPVCSCSKQRECRIVTRKALVPTAEEVQANPMARS 303 Query: 309 AKLRAG 314 +LRA Sbjct: 304 VRLRAA 309 >gi|53803411|ref|YP_114850.1| S-adenosyl-methyltransferase MraW [Methylococcus capsulatus str. Bath] gi|115311584|sp|Q604V0|RSMH_METCA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|53757172|gb|AAU91463.1| S-adenosyl-methyltransferase MraW [Methylococcus capsulatus str. Bath] Length = 301 Score = 184 bits (468), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 119/299 (39%), Positives = 182/299 (60%), Gaps = 13/299 (4%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMG--SNVIALDRDPFAVSCGQETMRD 80 +L +V+ +L P + +D TFG GG+SR+ ++G ++A+DRD AV+ T Sbjct: 1 MLSEVLEMLAVRPDGIYVDCTFGRGGHSRAILERLGPEGRLLAIDRDLEAVAAAGATGLS 60 Query: 81 YKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 +F + FS + +V +G VDG++ DLGVSS Q+D RGFSF ++GPLDMR Sbjct: 61 ADARFGIEHGRFSDVGRFVGARGWTGRVDGILMDLGVSSPQLDNARRGFSFLRAGPLDMR 120 Query: 137 MS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M +A++ + + + ++L R+L GEE+ A RIA A+V+ R+ P TT DL LI Sbjct: 121 MDPTQKTTAAEWLAEVSERELARVLRDYGEERFAGRIARAVVEERRRRPIVTTTDLVRLI 180 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + + F K+ HPATR+FQA+RI VN+E+ +L QGL A + L AGG L+V+SFHSLED Sbjct: 181 EAAIPF-KDKFKHPATRTFQAIRIAVNDELGQLQQGLNEAVEVLAAGGRLVVISFHSLED 239 Query: 256 RLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 R+VK+F + G+ MA + + + P + ++ K + +++ N R+RSA LRA Sbjct: 240 RIVKRFMRDEARGREMAG-GIFETRSCPRL--AVLGKPLKAGDDEIRINPRARSALLRA 295 >gi|16801213|ref|NP_471481.1| S-adenosyl-methyltransferase MraW [Listeria innocua Clip11262] gi|20139025|sp|Q929X6|RSMH_LISIN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|16414661|emb|CAC97377.1| lin2147 [Listeria innocua Clip11262] Length = 312 Score = 184 bits (468), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 107/303 (35%), Positives = 177/303 (58%), Gaps = 11/303 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGS--NVIALDRDPFAVSCGQE 76 H VLL + + +L P + +DAT G G+S K+ ++ A D+D A+ + Sbjct: 4 HETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEQGHLFAFDQDQTAIDNAKI 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + +Y ++ + ++ F +++ + ++G VDG+++DLGVSS Q+D +RGFS+ + L Sbjct: 64 KLAEYSDRVTFIKSNFRYMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQDAAL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM ++A VVN+ + +DL RI GEEK + +IA I +RR+ P +TT +L Sbjct: 124 DMRMDQEQELTAKKVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTGELV 183 Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + ++ HP R+FQA+RI VN+E+ + L +A LK GG + V++FH Sbjct: 184 DIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLENALTLLKPGGRISVITFH 243 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+ K F A++ + +IP P F+ T+K +VP++E++ N R+RSA Sbjct: 244 SLEDRITKYLFQEATKGPDLPPGLPVIPDEYKPD-FKLATRKPIVPSEEELEQNNRARSA 302 Query: 310 KLR 312 KLR Sbjct: 303 KLR 305 >gi|330721283|gb|EGG99370.1| rRNA small subunit methyltransferase H [gamma proteobacterium IMCC2047] Length = 312 Score = 184 bits (468), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 118/314 (37%), Positives = 180/314 (57%), Gaps = 22/314 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H VLL + + L PG +D TFG GG+SR+ S+ ++ +D+DP A++ E Sbjct: 7 HDSVLLNEAVDALVVDPGGCYVDGTFGRGGHSRAILSRLSSKGRLLVIDKDPQAIAYAHE 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVP----DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 D E+ + A+F++L+D + GV GV+ DLGVSS Q+D +RGFSF + GP Sbjct: 67 HFGD-DERVIIGHASFAELKDLAAAHGLENGVTGVLLDLGVSSPQLDDPERGFSFTQDGP 125 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G SA++ + +A ++++ +L GEE+ A R+A AIV R PF T L Sbjct: 126 LDMRMDTSRGQSAAEWIAEAPEEEISTVLKEYGEERFARRMAKAIVAERAQRPFTRTAHL 185 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +I++ + + +PATR+FQ +RIF+N E+++LA L A L G L+V+SFH Sbjct: 186 AEVIKQANPAWEKGK-NPATRAFQGIRIFINRELDDLALVLDQAVDLLADKGRLVVISFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK------KVVVPTQEDVAFNRR 305 SLEDR+VKKF + RH+ P + I + K V +++++ N R Sbjct: 245 SLEDRIVKKFIHKQEKGEPLPRHL------PIMQDQIDQRLKRVGKAVKASEQELKDNVR 298 Query: 306 SRSAKLRAGMRTVE 319 +RSA +R RTV+ Sbjct: 299 ARSAIMRIAERTVK 312 >gi|305681071|ref|ZP_07403878.1| S-adenosyl-methyltransferase MraW [Corynebacterium matruchotii ATCC 14266] gi|305659276|gb|EFM48776.1| S-adenosyl-methyltransferase MraW [Corynebacterium matruchotii ATCC 14266] Length = 341 Score = 184 bits (468), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 117/320 (36%), Positives = 175/320 (54%), Gaps = 28/320 (8%) Query: 20 HVPVLLEKVIALLNPA------PGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAV 71 HVPVL E+V LL PA +ILDAT GAGG+S F V I LDRD A+ Sbjct: 9 HVPVLRERVTELLAPALCNTITNPPIILDATLGAGGHSEYFLTTFPQVHIIGLDRDTTAL 68 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVP--------------DKGVDGVVFDLGVSSMQ 117 + + D+ ++ + F + +G+ G +FDLGVSSMQ Sbjct: 69 AQAATRLADFGDRITTLHTRFDDFPTAIQAAADAGNATCQAALTEGISGALFDLGVSSMQ 128 Query: 118 IDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 +D +RGF+++ PLDMRM+ S GI+A++++N DLTRIL G+E+ AS+IA AI Sbjct: 129 LDQVNRGFAYRVDAPLDMRMNNSEGITAAEILNTYPHGDLTRILKTYGDERFASKIATAI 188 Query: 177 VKRRQSAPFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 ++ R+ APF T+ L L+ T+ ++ HPA R+FQALRI VN E+ + L Sbjct: 189 IREREHAPFTTSARLVELLYNTIPAATRRTGGHPAKRTFQALRIEVNQELAAITNVLPRI 248 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVV 293 AL GG + +++ SLED+++KK+FA + S + +P A A F+ +T+ Sbjct: 249 ADALIPGGRAVFMAYQSLEDKIIKKYFAEITTSKTPRGLPMELPEYA--AKFRLVTRGAE 306 Query: 294 VPTQEDVAFNRRSRSAKLRA 313 T ++A N R+ ++RA Sbjct: 307 KATPAEIADNSRAAPVRVRA 326 >gi|239826514|ref|YP_002949138.1| S-adenosyl-methyltransferase MraW [Geobacillus sp. WCH70] gi|263455972|sp|C5D8L5|RSMH_GEOSW RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|239806807|gb|ACS23872.1| S-adenosyl-methyltransferase MraW [Geobacillus sp. WCH70] Length = 310 Score = 184 bits (468), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 109/303 (35%), Positives = 176/303 (58%), Gaps = 11/303 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H VLL++ + L+ P + +D T G GG+S S + A D+D A+ ++ Sbjct: 4 HTTVLLKEAVDGLHIKPDGIYVDCTLGGGGHSEYLLSQLSEDGRLFAFDQDDMAIEYAKK 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + Y++Q + + F L + + +GV DG++FDLGVSS Q+D +RGFS+ PL Sbjct: 64 RLARYEKQVTFIRRNFRFLAEELTARGVHRVDGILFDLGVSSPQLDTPERGFSYHHDAPL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ ++A D+VN ++L I GEEK + ++A I + R+ +TT L Sbjct: 124 DMRMNREQSLTAYDIVNHWPYEELVHIFFHYGEEKFSKQVARKIEEVRKEKRIETTGQLV 183 Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I++ + ++ + HPA R FQA+RI VN+E++ + + A LK+GG + V++FH Sbjct: 184 DIIKEAIPAPARRSGGHPAKRIFQAIRIAVNDELQAFKEAITQAIDLLKSGGRISVITFH 243 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+ K F AS+ ++ +IP PA+ + ITKK +VP++E++ N R+RSA Sbjct: 244 SLEDRICKVAFKEASQGPQLPPGLPLIPDQYRPAL-KIITKKPIVPSEEEIEHNHRARSA 302 Query: 310 KLR 312 KLR Sbjct: 303 KLR 305 >gi|297571245|ref|YP_003697019.1| S-adenosyl-methyltransferase MraW [Arcanobacterium haemolyticum DSM 20595] gi|296931592|gb|ADH92400.1| S-adenosyl-methyltransferase MraW [Arcanobacterium haemolyticum DSM 20595] Length = 336 Score = 184 bits (468), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 111/307 (36%), Positives = 170/307 (55%), Gaps = 10/307 (3%) Query: 20 HVPVLLEKVIALLNPA--PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQ 75 HVPVLL+ +I +L PA V++D T G GG+S +F + VI +DRD A+ Sbjct: 11 HVPVLLQPIIDMLGPALEGDSVLIDCTLGMGGHSEAFLRTFPSLRVIGIDRDEQAIELAS 70 Query: 76 ETMRDYKEQFSLFQATFSQLQ----DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + ++F T+ + Y VD ++ DLGVSS+Q+D DRGFS+ + Sbjct: 71 ARLAPFGDRFQAVHTTYDDVDRVAFTYGKSGCVDAILMDLGVSSLQLDEVDRGFSYSQDA 130 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S G++A +++N + ++ RIL + GEEK AS+IA AIVKRR+ P + T++ Sbjct: 131 PLDMRMDTSKGMTAGELLNSYSHGEIARILRVYGEEKFASQIARAIVKRREDHPLERTRE 190 Query: 191 LSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ L++ T+ ++ +P+ R+FQALR+ VNNE++ L + A +AL+ GG + V S Sbjct: 191 LADLVRDTIPAPARRKGGNPSKRTFQALRVAVNNELDVLEAAVPRALEALRVGGRIAVES 250 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 + SLEDR+VK F I H +T+ + + N RS S Sbjct: 251 YQSLEDRIVKDAFNVGLTSTSPAGLPIELADHAPYLAPLTRGAFKADRTEQELNPRSASV 310 Query: 310 KLRAGMR 316 +LR R Sbjct: 311 RLRGAER 317 >gi|126649733|ref|ZP_01721969.1| S-adenosyl-methyltransferase MraW [Bacillus sp. B14905] gi|126593452|gb|EAZ87397.1| S-adenosyl-methyltransferase MraW [Bacillus sp. B14905] Length = 316 Score = 184 bits (468), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 113/304 (37%), Positives = 173/304 (56%), Gaps = 11/304 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 DH VLL++ + LN P V +D T G G+S S+ +I D+D A+ + Sbjct: 3 DHTTVLLKETVDGLNIDPDGVYVDCTLGGAGHSEYLVHQLSDKGRLICFDQDMTAIENAK 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + Y E+ + + F L++ + G VDG+++DLGVSS Q+D +RGFS+ P Sbjct: 63 IRLAPYIERVTFIHSNFRYLKEELLAHGFEQVDGILYDLGVSSPQLDTPERGFSYHHDAP 122 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + ++A +VVNQ +DL RI GEEK + ++A I + R+SAP +TT L Sbjct: 123 LDMRMDQTATLTAFEVVNQWAYEDLVRIFFRYGEEKFSKQVARKIEEARKSAPIETTGQL 182 Query: 192 SSLIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 LI++ + + + HPA R FQA+RI VN+E+ L A + GG + V++F Sbjct: 183 VELIKEGIPAAARRKGGHPAKRIFQAIRIAVNDELGAAEDSLVDAIDMINVGGRISVITF 242 Query: 251 HSLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 HSLEDRL K F AS ++ +IP + P + + I++K ++P+ E++ N R+RS Sbjct: 243 HSLEDRLCKTIFKEASSLPELPPNLPVIPDDMKPTL-KLISRKPILPSDEELEVNNRARS 301 Query: 309 AKLR 312 AKLR Sbjct: 302 AKLR 305 >gi|162449928|ref|YP_001612295.1| methyltransferase [Sorangium cellulosum 'So ce 56'] gi|262826606|sp|A9FI25|RSMH_SORC5 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|161160510|emb|CAN91815.1| methyltransferase [Sorangium cellulosum 'So ce 56'] Length = 315 Score = 184 bits (468), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 113/302 (37%), Positives = 178/302 (58%), Gaps = 22/302 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETM 78 HV VL +V+A L+P V +DAT GAGG++ + + G+ VI +DRD A++ + + Sbjct: 23 HVSVLGREVLAALSPVSEGVYVDATLGAGGHTATILETPGARVIGIDRDERALAIARARL 82 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 ++ + FS+++ ++ GV DG++ D+GVSSMQ+D RG SF+ GPLDM Sbjct: 83 ARAGDRVTYVHGEFSEIERHLAALGVPQVDGLLADIGVSSMQLDDPGRGMSFRAEGPLDM 142 Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM S G +A +++ + + ++L ++ GEE+++ R+A I + S TT DL Sbjct: 143 RMDSSRGETALELIERLSDEELADLIYRYGEERRSRRVARCIKQAADSGELVTTLDLRRA 202 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 + + V ++ + PATR+FQALRI VN E+++L L +A + + GG+L V+SFHSLE Sbjct: 203 VVRAVGPARIGGVDPATRTFQALRIAVNGELDQLEALLEAAPRIIAPGGVLAVISFHSLE 262 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 DR+VK+ A+R P V++ +TKK V ++V N R+RSAKLRA Sbjct: 263 DRIVKR----------ALR-------EPEVWEPLTKKPVTAGDDEVEGNPRARSAKLRAA 305 Query: 315 MR 316 R Sbjct: 306 RR 307 >gi|315653716|ref|ZP_07906636.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Lactobacillus iners ATCC 55195] gi|315489078|gb|EFU78720.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Lactobacillus iners ATCC 55195] Length = 315 Score = 184 bits (468), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 120/312 (38%), Positives = 176/312 (56%), Gaps = 17/312 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 H VLL + I LN V +DATFG GG++ K SNV I D+D +A+ +++ Sbjct: 5 HYSVLLHETIDNLNLKSDGVYVDATFGGGGHASYLLKQLSNVHLIGFDQDEYAIELAKKS 64 Query: 78 MRDY-----KEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + K + SL F LQ + G+DG+ +DLGVSS Q D +RGFS++ Sbjct: 65 FSEVLKANSKPKLSLVHDNFGNLQQNLAKLGFIDGIDGIYYDLGVSSPQFDQPERGFSYR 124 Query: 129 KSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + LDMRM + A +VN + K+L+ IL G+EK A +IA IV +R P T Sbjct: 125 FNARLDMRMDQTKDLDAYKIVNTWSQKELSNILFKYGDEKYARQIAKNIVAKRAIKPITT 184 Query: 188 TQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T +L +I++ + F++ HPA +SFQA+RI VN+E+E L + L A + LK GG + Sbjct: 185 TFELVDIIKEAIPAFARRTGGHPAKKSFQAIRIAVNDELEVLEKSLLDAIEILKPGGRIC 244 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 V++F SLED++VKK F S V R M IP + P + + I++K +V T +++ N Sbjct: 245 VITFQSLEDKIVKKIFKKYSD-VDIPRGMPQIPDSLKPTL-KIISRKPIVATNKELEENN 302 Query: 305 RSRSAKLRAGMR 316 RS SAKLR + Sbjct: 303 RSHSAKLRVAEK 314 >gi|195444651|ref|XP_002069965.1| GK11803 [Drosophila willistoni] gi|194166050|gb|EDW80951.1| GK11803 [Drosophila willistoni] Length = 368 Score = 184 bits (468), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 130/332 (39%), Positives = 183/332 (55%), Gaps = 38/332 (11%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 HVPVL E I LNP LD TFGAGG++R S+ V ALDRDP A E Sbjct: 38 HVPVLCEVAIEYLNPKRNGNYLDMTFGAGGHTRRLLDTCSDCKVYALDRDPLAHQLAIEM 97 Query: 78 MR--DYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKS 130 + +YK + FS L + + + DG+++D G SSMQ D +RGFS ++ Sbjct: 98 SQKEEYKGRLVPLFGKFSDLPQLLDGQNLSRNSFDGMLYDFGCSSMQFDVANRGFSISQN 157 Query: 131 GPLDMRMSCSG---ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP-FQ 186 GPLDMRM ISA+DV+ +A DL RIL + GEEK A +IA AIV+ R + + Sbjct: 158 GPLDMRMDGGRGGGISAADVLARAEEDDLARILRVYGEEKAAKKIARAIVEARGALQRIE 217 Query: 187 TTQDLSSLIQKTVYFSKNNR------IHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 TT+ L+ L+ + S + + H AT++FQALRIFVNNE+ E+ G+ A + L Sbjct: 218 TTKQLADLVAAVLGDSSHRQDKLQRPSHAATKTFQALRIFVNNELNEINYGMLLANEVLC 277 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVR-HMIP-------SNAHPAVFQS----- 287 G L+ ++FHSLED +VK+ +G V+ R + +P P + QS Sbjct: 278 PEGRLVAITFHSLEDTIVKRHL---NGNVIEGRANPVPLKYCGHDVTLDPQLMQSFVQIK 334 Query: 288 ---ITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 + + V++P E++A N RSRSAKLRA ++ Sbjct: 335 WRQLHRHVILPDAEEIARNSRSRSAKLRAAIK 366 >gi|134294639|ref|YP_001118374.1| S-adenosyl-methyltransferase MraW [Burkholderia vietnamiensis G4] gi|263446940|sp|A4JB86|RSMH_BURVG RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|134137796|gb|ABO53539.1| S-adenosyl-methyltransferase MraW [Burkholderia vietnamiensis G4] Length = 313 Score = 184 bits (468), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 120/311 (38%), Positives = 182/311 (58%), Gaps = 21/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VLL++ + L P + +D TFG GG+SR+ G +IA D+DP A+ Q Sbjct: 7 HRTVLLDEAVDSLVTRPDGIYVDGTFGRGGHSRAVLARLAPGGRLIAFDKDPRAIETAQ- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 R +FS+ +F+ ++D + +GV+ GV+ DLGVSS Q+D RGFSF+ GPL Sbjct: 66 --RIEDARFSIVHDSFASMRDALAARGVEKVSGVLLDLGVSSPQVDDPARGFSFRADGPL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTT 188 DMRM + G SA++ + +A+V++LT ++ GEE+ A +IA A+V RR + P TT Sbjct: 124 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDTT 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ ++ V + + PATR+FQA+RI VN E+ +L L +A L+ GG L+V+ Sbjct: 184 GELAQIVGHVVKTREKGK-DPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVI 242 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNRR 305 SFHSLEDR+VK+F + + AV +P A S K++ P++ +VA N R Sbjct: 243 SFHSLEDRIVKRFMQAHA-SAPAVDRRLPIRA--VDLPSPPLKIISRQFPSEAEVAANPR 299 Query: 306 SRSAKLRAGMR 316 +RSA +R R Sbjct: 300 ARSAVMRIAER 310 >gi|34499806|ref|NP_904021.1| S-adenosyl-methyltransferase MraW [Chromobacterium violaceum ATCC 12472] gi|42559445|sp|Q7NPZ1|RSMH_CHRVO RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|34105656|gb|AAQ62010.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 320 Score = 184 bits (468), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 122/317 (38%), Positives = 180/317 (56%), Gaps = 14/317 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQE 76 H VLL + + L P V +D TFG GG+SR K+G + +IA D+DP A++ + Sbjct: 8 HRTVLLTEAVDALAIRPDGVYVDCTFGRGGHSRLILSKLGPSGRLIAFDKDPEAIAVA-D 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + +F++ F L + GVDGV+ DLGVSS QID G RGFSF+ PL Sbjct: 67 RLAAEDSRFNIVHNGFETLSAELARLGVAGVDGVLMDLGVSSPQIDDGSRGFSFRFDAPL 126 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + G++A++ + A+ D+ ++ GEE+ A +IA AIV +R +P TT++L+ Sbjct: 127 DMRMDTTRGVTAAEWLATADEADIREVIKTYGEERFARKIAAAIVAQRDESPITTTRELA 186 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 L+ + V + + PATR+FQA+RIFVN E++EL L A + L GG L V+SFHS Sbjct: 187 VLVGQNVRTREPGQ-DPATRTFQAIRIFVNRELDELKAVLPQAARLLNEGGRLAVISFHS 245 Query: 253 LEDRLVKKFF--ASRSGKVMAVRHMIPSN-AHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 LEDR+VK + S K+ A + ++ A P + + K + E+V N R+RSA Sbjct: 246 LEDRIVKLYLRDVSSEEKLPAWAMVRAADMAQPPI--DLVGKAIRAGDEEVRENPRARSA 303 Query: 310 KLRAGMRTVERSIEDDS 326 +R RT E D+ Sbjct: 304 IMRVAQRTAAPWREGDA 320 >gi|331016726|gb|EGH96782.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 313 Score = 184 bits (468), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 117/307 (38%), Positives = 179/307 (58%), Gaps = 20/307 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76 H+ VLLE+ + L LD TFG GG+SR +G + ++ D+DP A++ GQ Sbjct: 7 HITVLLEEAVEALAVRADGCYLDGTFGRGGHSRLILNHLGPDGRLLGFDKDPQAIATGQ- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F + Q +F++L + G V G++ DLGVSS Q+D +RGFSF GP Sbjct: 66 ALAAEDGRFVIVQRSFAELGSQAQELGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDGP 125 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G+SA++ + A +++ R+ GEE+ A R+A+A+V+RR+ PF+ T DL Sbjct: 126 LDMRMDPTRGVSAAEFIASAPAEEIARVFKEYGEERFAKRMANAVVQRREIQPFERTADL 185 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ K + +PATR+FQ LRI VNNE+ +L GL +A ++L+ GG L+V+SFH Sbjct: 186 AEVL-KVANPAWEKGKNPATRAFQGLRIHVNNELGDLEAGLEAAMESLEVGGRLVVISFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA------FNRR 305 SLEDR+V K F + K A +P N P +++ K+ + + A N R Sbjct: 245 SLEDRIV-KLFMRKLAKGEA--DNMPRNL-PIQYKAFEPKIKIHGKAQFASDVETKANPR 300 Query: 306 SRSAKLR 312 SRSA +R Sbjct: 301 SRSAVMR 307 >gi|237799282|ref|ZP_04587743.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022138|gb|EGI02195.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv. oryzae str. 1_6] Length = 313 Score = 184 bits (468), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 116/307 (37%), Positives = 177/307 (57%), Gaps = 20/307 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76 H+ VLLE+ + L LD TFG GG+SR S ++ D+DP A++ GQ Sbjct: 7 HITVLLEEAVEALAVRADGCYLDGTFGRGGHSRLILSHLGPDGRLLGFDKDPQAIATGQ- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F + Q +F++L ++ V G++ DLGVSS Q+D +RGFSF GP Sbjct: 66 ALAAEDGRFVIVQRSFAELGSEALERDLAGKVSGILLDLGVSSPQLDDPERGFSFMNDGP 125 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G+SA++ + A +++ R+ GEE+ A R+A+A+V+RR+ PF+ T DL Sbjct: 126 LDMRMDPTRGVSAAEFIASAPAEEIARVFKEYGEERFAKRMANAVVQRREIQPFERTADL 185 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ K + +PATR+FQ LRI VNNE+ +L GL +A +AL+ GG L+V+SFH Sbjct: 186 AEVL-KVANPAWEKGKNPATRAFQGLRIHVNNELGDLEAGLEAAMEALEVGGRLVVISFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVV------PTQEDVAFNRR 305 SLEDR+V K F + K A +P N P +++ K+ + + + N R Sbjct: 245 SLEDRIV-KLFMRKLAKGEA--DNMPRNL-PIQYKAFEPKIKIHGKAQFASDTETKANPR 300 Query: 306 SRSAKLR 312 SRSA +R Sbjct: 301 SRSAVMR 307 >gi|331269345|ref|YP_004395837.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum BKT015925] gi|329125895|gb|AEB75840.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum BKT015925] Length = 309 Score = 184 bits (468), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 110/305 (36%), Positives = 172/305 (56%), Gaps = 7/305 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 +HVPVLLE+ I LN + +D T G G+S K S +I +D+D A+ + Sbjct: 4 NHVPVLLEETIDSLNIKEDGIYVDCTLGGAGHSSHILKRLSKRGKLIGIDQDVNALKAAK 63 Query: 76 ETMRDYKEQFSLFQATFS--QLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 E +++Y + ++ + D + + VDG++ DLGVSS Q+D +RGFS+ + L Sbjct: 64 ERLKNYDNVIYVHNNFYNLASVLDELNIEKVDGILMDLGVSSYQLDTAERGFSYMQDAML 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ ISA +VVN+ + ++L RI+ GEE+ A +IA AIVK+R+ P +TT DL Sbjct: 124 DMRMNTEESISAYNVVNEYSEEELFRIIKEYGEERFARKIAKAIVKQREIEPVKTTLDLV 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ + HPA ++FQA+RI VN+E+E L + + K L G + V++FHS Sbjct: 184 KIIKNVIPMKFQQGGHPAKKTFQAIRIEVNHELEILNKTIEDGVKHLNLDGRISVITFHS 243 Query: 253 LEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK F + + V + IT+K + P++++ N RSRS+KL Sbjct: 244 LEDRIVKTKFKKLENPCTCPKEFPVCICGMKPVVKVITRKPLEPSEDEKENNSRSRSSKL 303 Query: 312 RAGMR 316 R + Sbjct: 304 RVAQK 308 >gi|28871551|ref|NP_794170.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv. tomato str. DC3000] gi|213966575|ref|ZP_03394726.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv. tomato T1] gi|301384710|ref|ZP_07233128.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv. tomato Max13] gi|302059802|ref|ZP_07251343.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv. tomato K40] gi|302131749|ref|ZP_07257739.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv. tomato NCPPB 1108] gi|38257958|sp|Q87WX7|RSMH_PSESM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|28854802|gb|AAO57865.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv. tomato str. DC3000] gi|213928425|gb|EEB61969.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv. tomato T1] Length = 313 Score = 184 bits (468), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 117/307 (38%), Positives = 179/307 (58%), Gaps = 20/307 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76 H+ VLLE+ + L LD TFG GG+SR +G + ++ D+DP A++ GQ Sbjct: 7 HITVLLEEAVEALAVRADGCYLDGTFGRGGHSRLILNHLGPDGRLLGFDKDPQAIATGQ- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F + Q +F++L + G V G++ DLGVSS Q+D +RGFSF GP Sbjct: 66 ALAAEDGRFVIVQRSFAELGSQAQELGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDGP 125 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G+SA++ + A +++ R+ GEE+ A R+A+A+V+RR+ PF+ T DL Sbjct: 126 LDMRMDPTRGVSAAEFIASAPAEEIARVFKEYGEERFAKRMANAVVQRREIQPFERTADL 185 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ K + +PATR+FQ LRI VNNE+ +L GL +A ++L+ GG L+V+SFH Sbjct: 186 AEVL-KVANPAWEKGKNPATRAFQGLRIHVNNELGDLEAGLEAAMESLEVGGRLVVISFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA------FNRR 305 SLEDR+V K F + K A +P N P +++ K+ + + A N R Sbjct: 245 SLEDRIV-KLFMRKLAKGEA--DNMPRNL-PIQYKAFEPKIKIHGKAQFASDVETKANPR 300 Query: 306 SRSAKLR 312 SRSA +R Sbjct: 301 SRSAVMR 307 >gi|293376042|ref|ZP_06622295.1| S-adenosyl-methyltransferase MraW [Turicibacter sanguinis PC909] gi|325844610|ref|ZP_08168253.1| S-adenosyl-methyltransferase MraW [Turicibacter sp. HGF1] gi|292645343|gb|EFF63400.1| S-adenosyl-methyltransferase MraW [Turicibacter sanguinis PC909] gi|325489035|gb|EGC91422.1| S-adenosyl-methyltransferase MraW [Turicibacter sp. HGF1] Length = 310 Score = 184 bits (468), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 108/307 (35%), Positives = 171/307 (55%), Gaps = 10/307 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQE 76 +H VLL + I L + +D T G GG+S K ++ + D+D FA+ + Sbjct: 3 NHYSVLLRESIENLEIKEDGIYVDCTLGGGGHSSEILKRLTTGHLYSFDQDSFAIENATK 62 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +++ + F++ ++ F L++ + +GV DG++FDLGVSS Q D +RGFS+ L Sbjct: 63 RLKEIGDNFTIIKSNFVHLKEELNARGVMKIDGIIFDLGVSSPQFDTPERGFSYNHDAKL 122 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM +SA ++VN+ K+L I + +EK + +IA AI + R+ P +TT +L Sbjct: 123 DMRMDQEAELSAYEIVNEWEYKNLEYIFRVYSDEKFSKQIARAIERYREKQPIETTFELV 182 Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + ++ HPA R+FQALRI VN+E++ + L+ A L G + V++FH Sbjct: 183 EIIKSAIPAPARRKGGHPAKRTFQALRIAVNDELKVFEKALKDAMDMLNVEGRVAVITFH 242 Query: 252 SLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+ K F RS R + IP P F+ IT+K +V + ++ N RS SA Sbjct: 243 SLEDRICKHMFKERSEAKDLPRGLPVIPQEFQPE-FKLITRKPIVADETELTENNRSHSA 301 Query: 310 KLRAGMR 316 KLR M+ Sbjct: 302 KLRVAMK 308 >gi|186477429|ref|YP_001858899.1| S-adenosyl-methyltransferase MraW [Burkholderia phymatum STM815] gi|263446931|sp|B2JHG8|RSMH_BURP8 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|184193888|gb|ACC71853.1| S-adenosyl-methyltransferase MraW [Burkholderia phymatum STM815] Length = 317 Score = 184 bits (468), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 119/310 (38%), Positives = 181/310 (58%), Gaps = 19/310 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGS--NVIALDRDPFAVSCGQE 76 H VLLE+ + L + +D TFG GG+SR+ K+G +IA D+DP A++ Q+ Sbjct: 11 HRTVLLEEAVNALVTRVDGIYIDGTFGRGGHSRAVLAKLGEAGRLIAFDKDPLAIATAQQ 70 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +F + +F+ L+D + ++ V GV+ DLGVSS Q D +RGFSF+ GPL Sbjct: 71 V---ADPRFEIVHESFASLRDAMSERAVGRVSGVLLDLGVSSPQFDDPERGFSFRADGPL 127 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTT 188 DMRM + G SA+D + +A V+++T ++ GEE+ A +IA A+V RR + P +T Sbjct: 128 DMRMDPTRGESAADWLARATVQEMTEVIRDYGEERFAFQIAKALVARRAESDRLGPLVST 187 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ ++ V + + PATR+FQA+RI +N E+ EL L +A L+ GG L+V+ Sbjct: 188 GELAQIVANVVKTREKGK-DPATRTFQAIRIHINQELAELQVVLEAALSLLEQGGRLVVI 246 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA--HPAVFQSITKKVVVPTQEDVAFNRRS 306 SFHSLEDR+VK+F + S AV +P A P+ + +V + E+VA N R+ Sbjct: 247 SFHSLEDRIVKRFMQTHS-SAPAVDRRLPIRAVDLPSPPLKLLGRVFA-SDEEVAANPRA 304 Query: 307 RSAKLRAGMR 316 RSA +R R Sbjct: 305 RSAVMRVAER 314 >gi|28211297|ref|NP_782241.1| S-adenosyl-methyltransferase MraW [Clostridium tetani E88] gi|42559471|sp|Q894B4|RSMH_CLOTE RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|28203737|gb|AAO36178.1| S-adenosyl-methyltransferase mraW [Clostridium tetani E88] Length = 310 Score = 184 bits (468), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 111/303 (36%), Positives = 176/303 (58%), Gaps = 12/303 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+ VLL++ I LN + +D T G G+S K S +I +D+D A+ E Sbjct: 5 HISVLLDECIEGLNIKENGIYVDCTLGGAGHSSEILKNLSKEGKLIGIDQDEEALKAASE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +++Y E + F ++D + + VDG++ DLGVSS Q+D RGFS+ ++ PL Sbjct: 65 KLKEY-ENVLYKHSNFYHIKDILEELEVGKVDGILMDLGVSSYQLDEKSRGFSYMQNAPL 123 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ S + A +VVN + L RI+ GEE+ A RI++ IV+ R++ +TT +L Sbjct: 124 DMRMNKKSSLDAYEVVNFYDESKLARIIKDYGEERFAKRISNFIVESRENKKIETTGELV 183 Query: 193 SLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I++ + F + HPA R+FQA+RI VN E+E L + + + K+LK+GG + +++F Sbjct: 184 DIIKRAIPAKFRREGP-HPAKRTFQAIRIEVNGELEILNKAIEDSVKSLKSGGRIAIITF 242 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK F + + I + + + IT+K + P++E+V N RSRSA Sbjct: 243 HSLEDRIVKNKFKELEDPCICPKDFPICTCGKEPLVKIITRKPIDPSKEEVEINPRSRSA 302 Query: 310 KLR 312 KLR Sbjct: 303 KLR 305 >gi|308181002|ref|YP_003925130.1| cell division protein MraW [Lactobacillus plantarum subsp. plantarum ST-III] gi|308046493|gb|ADN99036.1| cell division protein MraW [Lactobacillus plantarum subsp. plantarum ST-III] Length = 319 Score = 184 bits (468), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 118/307 (38%), Positives = 170/307 (55%), Gaps = 13/307 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MG--SNVIALDRDPFAVSCGQ 75 +H VLL + IA LN P + +D T G GG+SR + +G ++ + D+D A+ Q Sbjct: 5 EHTTVLLHEAIAALNVRPDGIYVDCTLGGGGHSREILQQLGPEGHLYSFDQDQTAIDYNQ 64 Query: 76 ETMRDYKE--QFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + Y E Q + ++ F+ L+ + +G VDGVV+DLGVSS Q D RGFS+Q Sbjct: 65 SNLATYLERGQVTFIKSNFANLKTELNARGLDHVDGVVYDLGVSSPQFDDAARGFSYQHD 124 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM S ++A VVN DL RI GEEK + ++A I + R P TT Sbjct: 125 APLDMRMDQSQKLTAQTVVNTWPYADLVRIFYRYGEEKFSKQVARLIERERAVQPIVTTG 184 Query: 190 DLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L +I+ + ++ HPA R FQA+RI VNNE+ L L A + G + V+ Sbjct: 185 QLVEIIKNAIPARARRTGGHPAKRVFQAIRIAVNNELGVLETSLEQAIDLINVHGRVSVI 244 Query: 249 SFHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 +F SLEDRLVK F S ++ +IP+ P ++ +++K VVP+ ++ NRR+ Sbjct: 245 TFQSLEDRLVKTIFKEHSDLPELPPGLPVIPAEMQPD-YRLVSRKPVVPSDAEIEANRRA 303 Query: 307 RSAKLRA 313 RSAKLRA Sbjct: 304 RSAKLRA 310 >gi|307637393|gb|ADN79843.1| rRNA small subunit methyl transferase H [Helicobacter pylori 908] Length = 308 Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 119/302 (39%), Positives = 178/302 (58%), Gaps = 16/302 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVSCGQET 77 H VLL++V+ P V++D T G GG+S++ K +I +D+D FA +E Sbjct: 8 HQSVLLQEVLQAFTPLEEGVLIDCTLGLGGHSKAILSQKPHLKLIGIDKDKFAQEIAKER 67 Query: 78 MRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 +++++ +++L F++ ++ + G + GV+ DLGVSS+Q+D +RGF+F +S LD Sbjct: 68 LKEFEGRYNLLSGGFAKRFKEALEIHGERIKGVLVDLGVSSLQLDDDNRGFNF-RSHALD 126 Query: 135 MRMSCSGIS-ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM S A V+N V L +I GE K+ +IAH I +RR PF+ +DLS Sbjct: 127 MRMDLESESNAQKVINSYPVVALEKIFRDYGEIKEYKKIAHKIAERRAKKPFKDAKDLSE 186 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 + SKN +IHPAT FQA+RI VN+E+EEL + L+ A + LK G +L V+SFHSL Sbjct: 187 FLSS---LSKNKKIHPATLVFQAVRIEVNSELEELKEFLQYA-RNLK-GAILCVISFHSL 241 Query: 254 EDRLVKKFFASRSGKVM---AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 ED LVK F + + + SN H A+ +TKK + P+ E++ NRRSRSAK Sbjct: 242 EDGLVKNAFKDYAKNCICDPSSFKCACSNNH-ALGAILTKKPITPSPEEIKNNRRSRSAK 300 Query: 311 LR 312 +R Sbjct: 301 MR 302 >gi|320547904|ref|ZP_08042187.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus equinus ATCC 9812] gi|320447444|gb|EFW88204.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus equinus ATCC 9812] Length = 319 Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 118/323 (36%), Positives = 180/323 (55%), Gaps = 19/323 (5%) Query: 6 CKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VI 62 K M+ HH + VLL + + +L+ P + +DAT G G+S K+G N + Sbjct: 1 MKGMTKDFHH-----ITVLLHETVDMLDIKPDGIYVDATLGGAGHSEYLLSKLGPNGHLY 55 Query: 63 ALDRDPFAVSCGQETMRDYKE--QFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQ 117 A D+D A+ Q ++DY E Q + + F L + GV DG+++DLGVSS Q Sbjct: 56 AFDQDQTAIDNAQIRLKDYIEKGQVTFIKDNFRNLASNLAMHGVTEIDGILYDLGVSSPQ 115 Query: 118 IDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 +D +RGFS++K PLDMRM+ ++A DVVN + DL RI GE+K + +IA I Sbjct: 116 LDERERGFSYKKDAPLDMRMNREQDLTAYDVVNTYDYHDLVRIFYKYGEDKFSKQIARKI 175 Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRS 234 + RQ P +TT +L+ +I K+ +K + HPA + FQA+RI VN+E+ + ++ Sbjct: 176 EQARQVKPIETTTELAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQ 234 Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVV 293 A L G + V++FHSLEDRL K+ F S +V IP + P + + +K + Sbjct: 235 AIDLLVVDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDMQPKL-ALVNRKPI 293 Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316 +P+QE++ N RS SAKLR + Sbjct: 294 LPSQEELEANNRSHSAKLRVARK 316 >gi|261365120|ref|ZP_05978003.1| S-adenosyl-methyltransferase MraW [Neisseria mucosa ATCC 25996] gi|288566552|gb|EFC88112.1| S-adenosyl-methyltransferase MraW [Neisseria mucosa ATCC 25996] Length = 317 Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 120/309 (38%), Positives = 169/309 (54%), Gaps = 16/309 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQE 76 H+ VLL + + L + +D TFG GG+SR ++GS +I D+DP A+ Q+ Sbjct: 8 HITVLLNEAVDALAVREDGIYVDGTFGRGGHSRLILSRLGSQGRLIVFDKDPQAIEAAQK 67 Query: 77 TMRD------YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + FS FQ T +L + +DG +FDLG+SS QID G RGFSF+ Sbjct: 68 LAEQDGRVTVVHDGFSSFQTTLDKLGI----EEIDGALFDLGISSPQIDDGARGFSFRFD 123 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM + G+SA+D + A+ +DL ++ GEE+ + +IA AIV +R P TT+ Sbjct: 124 APLDMRMDPTRGMSAADWIATASEQDLHEVIKNYGEERFSRQIARAIVAQRAENPIDTTR 183 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ L+ + V + + PATR+FQA+RIF+N E+EE+ L LK GG L V++ Sbjct: 184 KLAQLVAQNVRTRERGQ-DPATRTFQAVRIFINRELEEVEAVLPQVMGRLKEGGRLAVIA 242 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK+F S R A P K + P E+ A N R+RS Sbjct: 243 FHSLEDRIVKQFVKKYSQHPPLPRWAAVKEADLPLPPLKAVGKAIKPGVEETASNPRARS 302 Query: 309 AKLRAGMRT 317 A LR RT Sbjct: 303 AVLRVAERT 311 >gi|238026124|ref|YP_002910355.1| S-adenosyl-methyltransferase MraW [Burkholderia glumae BGR1] gi|237875318|gb|ACR27651.1| S-adenosyl-methyltransferase MraW [Burkholderia glumae BGR1] Length = 313 Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 119/311 (38%), Positives = 183/311 (58%), Gaps = 21/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VLL++ + L P V +D TFG GG+SR+ G +IA D+DP A++ Q+ Sbjct: 7 HRTVLLDEAVDALVTRPDGVYVDGTFGRGGHSRAVLARLAEGGRLIAFDKDPLAIATAQQ 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +FS+ +F+ L + ++GV GV+ DLGVSS QID +RGFSF+ +GPL Sbjct: 67 IA---DPRFSIVHDSFASLGGALAERGVARVTGVLLDLGVSSPQIDDPERGFSFRANGPL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTT 188 DMRM + G SA+D + +A++++LT ++ GEE+ A +IA A+V RR+ + P +T Sbjct: 124 DMRMDTTRGESAADWLARASLQELTEVIRDYGEERFAFQIAKALVARREESDRLGPLDST 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ ++ V + + PATR+FQA+RI VN E+ +L L +A +L+ GG L+V+ Sbjct: 184 GELAQIVGHAVKTREKGK-DPATRTFQAIRIHVNQELADLQVVLGAALSSLEQGGRLVVI 242 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNRR 305 SFHSLEDR+VK+F + + AV +P A S K++ P+ +V N R Sbjct: 243 SFHSLEDRIVKRFLQTHA-SAPAVDRRLPIRA--VDLPSPPLKLLGRKFPSDAEVDANPR 299 Query: 306 SRSAKLRAGMR 316 +RSA +R R Sbjct: 300 ARSAVMRIAER 310 >gi|56419646|ref|YP_146964.1| S-adenosyl-methyltransferase MraW [Geobacillus kaustophilus HTA426] gi|68565432|sp|Q5L0Y4|RSMH_GEOKA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|56379488|dbj|BAD75396.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426] Length = 310 Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 116/303 (38%), Positives = 177/303 (58%), Gaps = 11/303 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H VLL++ + LN P + +D T G+GG+S S + A D+D A+ +E Sbjct: 4 HTTVLLKEAVDGLNIRPDGIYVDCTLGSGGHSEYLLSRLSEHGKLFAFDQDEAAIMHARE 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + Y Q F LQ+ + K VDGV+FDLGVSS Q+D +RGFS+Q PL Sbjct: 64 RLARYGRQVQFVHRNFRFLQEELSALGVKSVDGVLFDLGVSSPQLDEPERGFSYQHDAPL 123 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ ++A+++VN ++L RI GEE+ + ++A I + R++ P +TT +L Sbjct: 124 DMRMNRKQRLTAAEIVNCWPYEELVRIFFRYGEERFSKQVARKIEEVRRTRPIKTTGELV 183 Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + ++ + HPA R FQALRI VN+E+E + L A + L GG + V++FH Sbjct: 184 DVIKAAIPAPARRSGGHPAKRIFQALRIAVNDELEAFREALEQAIELLAPGGRVSVITFH 243 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+ K+ F AS S + ++P + P V + ITKK +VP++E++ N R+RSA Sbjct: 244 SLEDRICKETFKKASESPPLPPGLPVLPDDYRP-VLKIITKKPIVPSEEELERNHRARSA 302 Query: 310 KLR 312 KLR Sbjct: 303 KLR 305 >gi|253998164|ref|YP_003050227.1| S-adenosyl-methyltransferase MraW [Methylovorus sp. SIP3-4] gi|253984843|gb|ACT49700.1| S-adenosyl-methyltransferase MraW [Methylovorus sp. SIP3-4] Length = 321 Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 125/317 (39%), Positives = 186/317 (58%), Gaps = 25/317 (7%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVS 72 + HV VLLE+ +A L P + +D TFG GG+SR ++G++ ++ LDRD AVS Sbjct: 12 VVSPHVSVLLEEAVAALAIKPNGIYVDGTFGRGGHSRKILEQLGADGRLLGLDRDLAAVS 71 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK 129 + +++D + FS+ FS+L + + + VDGV+ DLG+SS QID G+RGFSF+ Sbjct: 72 AAR-SIQDPR--FSIHHHHFSELGEVLRAQDIQQVDGVLLDLGISSPQIDEGERGFSFRF 128 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA-PFQT 187 GPLDMRM S G +A++ + +A+ + LT ++ GEE+ A ++A AIV R T Sbjct: 129 DGPLDMRMDQSRGQTAAEFLAEASEQQLTGVIKEYGEERFAKQVARAIVAARTGGDALTT 188 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T L+ ++ + + + PATR+FQALRIF+N E+EEL+ L AL GG L V Sbjct: 189 TGQLAKVVAGAIPKVEPGQ-DPATRTFQALRIFLNQELEELSLVLPQCLDALAPGGRLAV 247 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK-------KVVVPTQEDV 300 +SFHSLEDR+VK+F S R +P+N P + + + + K + P+ ++ Sbjct: 248 ISFHSLEDRIVKRFVRSEQD-----RDDLPAN-FPVLAKDLPQPRMMAVGKPIKPSAAEI 301 Query: 301 AFNRRSRSAKLRAGMRT 317 N RSRSA LR RT Sbjct: 302 KRNPRSRSAVLRVAERT 318 >gi|166031196|ref|ZP_02234025.1| hypothetical protein DORFOR_00882 [Dorea formicigenerans ATCC 27755] gi|166029043|gb|EDR47800.1| hypothetical protein DORFOR_00882 [Dorea formicigenerans ATCC 27755] Length = 311 Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 108/303 (35%), Positives = 173/303 (57%), Gaps = 11/303 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGS--NVIALDRDPFAVSCGQE 76 H VLL + I LN P + +D T G GG++ C+ +G +++ +D+D A+ Sbjct: 5 HKSVLLNETIDGLNIKPDGIYVDGTLGGGGHAYEVCRRLGEKGSIVGIDQDAAAIEAASA 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++D+ E+ ++ ++ + ++ + + G VDG+V DLGVSS Q+D +RGFS+++ PL Sbjct: 65 RLKDFGEKVTIVRSNYCDMKSKLHELGIDKVDGIVLDLGVSSYQLDTAERGFSYREDAPL 124 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM ++A D+VN DL R++ GE+K A IA IV+ R P +TT +LS Sbjct: 125 DMRMDTRQKMTARDIVNDYTEADLYRVIRDYGEDKFAKNIAKHIVQARAVKPVETTAELS 184 Query: 193 SLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+ ++ F K + HPA R+FQA+RI +N E++ L L L GG L +++F Sbjct: 185 EIIRASIPMKFQKKSG-HPAKRTFQAIRIELNRELDVLRDSLDDMIDLLNPGGRLCIITF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK F + + ITKK ++P++E++ +N RS+SA Sbjct: 244 HSLEDRIVKSAFRKNENPCTCPPDFPVCVCGKKSKGSIITKKPILPSEEELEYNSRSKSA 303 Query: 310 KLR 312 KLR Sbjct: 304 KLR 306 >gi|307731080|ref|YP_003908304.1| S-adenosyl-methyltransferase MraW [Burkholderia sp. CCGE1003] gi|307585615|gb|ADN59013.1| S-adenosyl-methyltransferase MraW [Burkholderia sp. CCGE1003] Length = 313 Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 122/311 (39%), Positives = 185/311 (59%), Gaps = 21/311 (6%) Query: 20 HVPVLLEKVI-ALLNPAPGKVILDATFGAGGYSRSFC-KMGS--NVIALDRDPFAVSCGQ 75 H VLLE+ + AL+ A G V +D TFG GG+SR K+G +IA D+DP A++ Q Sbjct: 7 HRTVLLEEAVEALVTRADG-VYVDGTFGRGGHSRRVLEKLGEAGRLIAFDKDPLAIATAQ 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F++ +F+ L+ + ++G++ GV+ DLGVSS Q+D +RGFSF+ GP Sbjct: 66 QIA---DPRFAIVHESFASLRTAIAERGIERVSGVLLDLGVSSPQVDDPERGFSFRADGP 122 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQT 187 LDMRM + G SA+D + +A V++LT ++ GEE+ A +IA A+V RR + P + Sbjct: 123 LDMRMDPTRGESAADWLARATVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLVS 182 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T +L+ ++ V + + PATR+FQA+RI +N E+ EL L +A L+ GG L+V Sbjct: 183 TGELAQIVANVVKTREKGK-DPATRTFQAIRIHINQELAELQVVLEAALSLLEQGGRLVV 241 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA--HPAVFQSITKKVVVPTQEDVAFNRR 305 +SFHSLEDR+VK+F + + AV +P A P+ I ++ E VA N R Sbjct: 242 ISFHSLEDRIVKRFMQAHA-SAPAVDRRLPIRAVDLPSPPLKIIGRIFASDAE-VAANPR 299 Query: 306 SRSAKLRAGMR 316 +RSA +R R Sbjct: 300 ARSAVMRVAER 310 >gi|104783461|ref|YP_609959.1| S-adenosyl-methyltransferase MraW [Pseudomonas entomophila L48] gi|122401960|sp|Q1I5B0|RSMH_PSEE4 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|95112448|emb|CAK17175.1| S-adenosylmethionine methyltransferase MraW [Pseudomonas entomophila L48] Length = 315 Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 118/309 (38%), Positives = 177/309 (57%), Gaps = 22/309 (7%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMG--SNVIALDRDPFAVSCGQ 75 +H+ VLL++ + L LD TFG GG+SR K+G ++ D+DP A++ GQ Sbjct: 8 NHITVLLDEAVEALALRADGCYLDGTFGRGGHSRLILSKLGPQGRLLGFDKDPQAIATGQ 67 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +F + Q +F++L V + V G++ DLGVSS Q+D +RGFSF G Sbjct: 68 -ALAAEDGRFVIVQRSFAELGAEVAGRDLAGKVSGILLDLGVSSPQLDDPERGFSFLNDG 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ + GISA++ + A V+++ R+ GEE+ A R+A A+V+RR+ PF T D Sbjct: 127 PLDMRMNPNQGISAAEFIATAPVEEIARVFKEYGEERFAGRMARAVVERREKQPFTRTAD 186 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ ++ K + +PATR+FQ LRI VNNE+ +L GL +A AL+ GG L V+SF Sbjct: 187 LAEVL-KVANPAWEKGKNPATRAFQGLRIHVNNELGDLETGLEAALDALEVGGRLAVISF 245 Query: 251 HSLEDRLVKKFF-------ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 HSLEDR+VK F A + + V+H P + + K ++ ++ N Sbjct: 246 HSLEDRIVKLFMRKLVKGEADNLPRNLPVQH---KTFEPRI--KLIGKAQFASEAELKAN 300 Query: 304 RRSRSAKLR 312 RSRSA +R Sbjct: 301 PRSRSAVMR 309 >gi|325962941|ref|YP_004240847.1| S-adenosyl-methyltransferase MraW [Arthrobacter phenanthrenivorans Sphe3] gi|323469028|gb|ADX72713.1| S-adenosyl-methyltransferase MraW [Arthrobacter phenanthrenivorans Sphe3] Length = 330 Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 115/301 (38%), Positives = 169/301 (56%), Gaps = 19/301 (6%) Query: 20 HVPVLLEKVIALLNPAPG----------KVILDATFGAGGYSRSFCKMGSNV--IALDRD 67 HVPVL ++ I LL APG V +DAT G GG+S + + ++ I +DRD Sbjct: 12 HVPVLRDRCINLL--APGFEAARLRGETPVAIDATLGMGGHSEAMLQRFPDLHLIGIDRD 69 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRG 124 A++ E + + + L A + ++ D + D GV G++ DLGVSS+Q+D +RG Sbjct: 70 EEALALAGERLAPFAARTDLVHAVYDEIPDVLADLGVSEVHGILMDLGVSSLQLDERERG 129 Query: 125 FSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 F++ PLDMRM S G +A+DVVN + ++L RI+ GEEK A RIA+ IV R Sbjct: 130 FAYSFDAPLDMRMDTSRGQTAADVVNTYSEEELVRIIRKWGEEKFAGRIANRIVAARAVK 189 Query: 184 PFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 PF TT +L I+ V S HPA R+FQALRI VN E++ L + + +A +L G Sbjct: 190 PFSTTGELVEQIRSVVPASAAKTGGHPAKRTFQALRIEVNEELDVLERAVPAAVDSLAMG 249 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G ++V+S+HSLED++VK RS + + H +++TK VPT ++A Sbjct: 250 GRIVVMSYHSLEDKIVKGVLQGRSKSSAPLGFPVELEEHKPELKTLTKGTEVPTAVEIAE 309 Query: 303 N 303 N Sbjct: 310 N 310 >gi|15611713|ref|NP_223364.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori J99] gi|8134818|sp|Q9ZLD4|RSMH_HELPJ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|4155209|gb|AAD06233.1| putative [Helicobacter pylori J99] Length = 308 Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 116/302 (38%), Positives = 178/302 (58%), Gaps = 16/302 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVSCGQET 77 H VLL++V+ P +++D T G GG+S++ K +I +D+D FA +E Sbjct: 8 HQSVLLQEVLQAFTPLEEGILIDCTLGLGGHSKAILSQKPHLKLIGIDKDKFAQEIAKER 67 Query: 78 MRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 +++++ +++L F++ ++ + G + GV+ DLGVSS+Q+D +RGF+F +S LD Sbjct: 68 LKEFEGRYNLLSGGFAKRFKEALEIHGERIKGVLVDLGVSSLQLDDDNRGFNF-RSHALD 126 Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM S ++A V+N V L +I GE K+ +IAH I +RR PF+ +DLS Sbjct: 127 MRMDLESELNAQKVINSYPVVALEKIFRDYGEIKEYKKIAHKIAERRAKKPFKDAKDLSE 186 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 + SKN +IHPAT FQA+RI VN+E+EEL + L+ A +A +L V+SFHSL Sbjct: 187 FLSS---LSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCARNLKEA--ILCVISFHSL 241 Query: 254 EDRLVKKFFASRSGKVM---AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 ED LVK F + + + SN H A+ +TKK + P+ E++ NRRSRSAK Sbjct: 242 EDALVKNAFKDYAKNCICDPSSFKCACSNNH-ALGAILTKKPITPSPEEIKNNRRSRSAK 300 Query: 311 LR 312 +R Sbjct: 301 MR 302 >gi|330877141|gb|EGH11290.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 313 Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 117/307 (38%), Positives = 179/307 (58%), Gaps = 20/307 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76 H+ VLLE+ + L LD TFG GG+SR +G + ++ D+DP A++ GQ Sbjct: 7 HITVLLEEAVEALAVRADGCYLDGTFGRGGHSRLILNHLGPDGRLLGFDKDPQAIATGQ- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F + Q +F++L + G V G++ DLGVSS Q+D +RGFSF GP Sbjct: 66 ALAAEDGRFVIVQRSFAELGSQAQELGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDGP 125 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G+SA++ + A +++ R+ GEE+ A R+A+A+V+RR+ PF+ T DL Sbjct: 126 LDMRMDPTRGVSAAEFIASAPAEEIARVFKEYGEERFAKRMANAVVQRREIQPFERTADL 185 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ K + +PATR+FQ LRI VNNE+ +L GL +A ++L+ GG L+V+SFH Sbjct: 186 AEVL-KVANPAWEKGKNPATRAFQGLRIHVNNELGDLEAGLEAAMESLEIGGRLVVISFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA------FNRR 305 SLEDR+V K F + K A +P N P +++ K+ + + A N R Sbjct: 245 SLEDRIV-KLFMRKLAKGEA--DNMPRNL-PIQYKAFEPKIKIHGKAQFASDVETKANPR 300 Query: 306 SRSAKLR 312 SRSA +R Sbjct: 301 SRSAVMR 307 >gi|89095267|ref|ZP_01168188.1| S-adenosyl-methyltransferase [Oceanospirillum sp. MED92] gi|89080474|gb|EAR59725.1| S-adenosyl-methyltransferase [Oceanospirillum sp. MED92] Length = 312 Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 104/252 (41%), Positives = 154/252 (61%), Gaps = 12/252 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQ 75 H+ VLL++ + L +D TFG GG+S S G ++ +D+DP A++ Sbjct: 7 HITVLLDEAVDALVQDKSGFYVDGTFGRGGHS-SLVLQGLDENGRLMGIDKDPTAIAHAH 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E +D +E+FS+ +F+QLQ +V ++G VDGV+ DLGVSS Q+D RGFSF G Sbjct: 66 ERFKD-EERFSIAHGSFAQLQQFVTERGMDGKVDGVLLDLGVSSPQLDDASRGFSFLNDG 124 Query: 132 PLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + SG SA++ + +A ++ ++ GEEK + R+A AIV R P TT Sbjct: 125 PLDMRMDTSSGESAAEWIARAEESEIADVIYTYGEEKFSRRMAKAIVNYRAETPITTTAQ 184 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ +I + + + +PATR+FQ +RI +N E+E+L + L A LK GG L+V+SF Sbjct: 185 LAKIIAEANPAWEKGK-NPATRAFQGIRIHINKELEDLEKCLDQALDMLKVGGRLVVISF 243 Query: 251 HSLEDRLVKKFF 262 HSLEDR+VK+F Sbjct: 244 HSLEDRIVKRFI 255 >gi|325980947|ref|YP_004293349.1| S-adenosyl-methyltransferase MraW [Nitrosomonas sp. AL212] gi|325530466|gb|ADZ25187.1| S-adenosyl-methyltransferase MraW [Nitrosomonas sp. AL212] Length = 308 Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 121/314 (38%), Positives = 179/314 (57%), Gaps = 25/314 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGS--NVIALDRDPFAVSCGQE 76 H PVLL + L P + +DATFG GG+SR +G +IALDRDP AV G E Sbjct: 2 HTPVLLHAAVDALALKPEGIYVDATFGRGGHSRLILSGLGECGRLIALDRDPAAVLSG-E 60 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + D ++F + +FS++++ + +DGV+ DLGVSS Q++ RGFSF+ +GPL Sbjct: 61 AITD--KRFCIRHGSFSRVREILQAMEITRIDGVLLDLGVSSPQLEDTARGFSFRSAGPL 118 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM SG +AS+ ++ + +L ++ GEE+ A +IA AI+ R P TT L+ Sbjct: 119 DMRMDTSGGQTASEWLSTVSESELEWVIKEYGEERFARQIARAILAARTQQPIATTLQLA 178 Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++ V ++++ HPATR+FQA+RI++N E+EELA L L+ GG L+V+SFH Sbjct: 179 GIVAAVVRARQRDSKRHPATRTFQAIRIYLNRELEELALVLPQCVDLLRPGGRLVVISFH 238 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITKKVVVP-------TQEDVAF 302 SLEDR+VK+F + A +P Q +K+ + P + +V Sbjct: 239 SLEDRMVKQFI-----RAAASTDNLPRGVPVREEELQRFSKQTLRPVGRAIRSNELEVTE 293 Query: 303 NRRSRSAKLRAGMR 316 N RSRSA +R G R Sbjct: 294 NVRSRSAVMRVGER 307 >gi|313156840|gb|EFR56280.1| S-adenosyl-methyltransferase MraW [Alistipes sp. HGB5] Length = 368 Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 122/307 (39%), Positives = 169/307 (55%), Gaps = 22/307 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRD-PFAVSCGQ 75 H PVLL++ + LL P +D TFG GG+SR + G + A D+D +C Sbjct: 70 HTPVLLKESVDLLAVDPAGTYVDLTFGGGGHSRRILEKLGPGGRLYAFDQDRDTRANCPD 129 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + Y E F +L++ + VDG++ DLGVSS D +RGFSF+ PLDM Sbjct: 130 DGRFHYVESNFRFLRGALRLREV---EQVDGILADLGVSSHHFDAVERGFSFRGEAPLDM 186 Query: 136 RMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM+ G ++A+ VVN LTR+LG GE + +IA+ IV+ R++AP +TT L Sbjct: 187 RMNQRGALTAARVVNGYPADALTRLLGEWGELETPWKIANCIVRAREAAPIETTAQLVEA 246 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 ++ K + T+ FQALRI VN E+E L L + K L+ GG L+V+S+HSLE Sbjct: 247 VKPCT--PKKDESKFLTKLFQALRIEVNGEMEALKMALEQSLKVLRPGGRLVVISYHSLE 304 Query: 255 DRLVKKF-----FASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 DRLVK F F+ K R + P F+ IT+K VVPT E++ N RSRSA Sbjct: 305 DRLVKNFLRSGNFSGSVEKDFFGRALTP-------FEIITRKAVVPTAEELERNPRSRSA 357 Query: 310 KLRAGMR 316 KLRA + Sbjct: 358 KLRAAAK 364 >gi|160896909|ref|YP_001562491.1| S-adenosyl-methyltransferase MraW [Delftia acidovorans SPH-1] gi|263446201|sp|A9BUJ8|RSMH_DELAS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|160362493|gb|ABX34106.1| S-adenosyl-methyltransferase MraW [Delftia acidovorans SPH-1] Length = 309 Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 130/310 (41%), Positives = 190/310 (61%), Gaps = 23/310 (7%) Query: 20 HVPVLL-EKVIALLN----PAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAV 71 H+ VLL E V ALL+ P G+ + DATFG GG+SR ++G + ++A D+DP A+ Sbjct: 7 HITVLLDEAVDALLDGAAQPVAGQWV-DATFGRGGHSRRILQRLGPDGALLAFDKDPDAI 65 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +E R +FS+ F L + +P V GV+ DLGVSS QID +RGFSF+ G Sbjct: 66 ---EEAARITDARFSIRHEGFRHLSE-LPAGSVQGVLMDLGVSSPQIDNPERGFSFRFEG 121 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQTTQ 189 PLDMRM + G S +D + +A+ + + ++ GEE+ A IA AIV RR+S P + T Sbjct: 122 PLDMRMDTTRGQSVADWLAEADAQQIAEVIRDYGEERFAGPIAKAIVARRESQGPLRNTA 181 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 +L+ L+ V + + +PATR+FQALRIF+N E+EEL Q L ++ + L GG L+V+S Sbjct: 182 ELAELVAGAVRTREAGQ-NPATRTFQALRIFINAELEELEQALEASLRVLAPGGRLVVIS 240 Query: 250 FHSLEDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 FHSLEDR+VK+F A S +V R +P+ P +++ + + P++ +VA N RSR Sbjct: 241 FHSLEDRIVKQFIAKHSKEVYDRRAPFAVPT---PMRLEALGR--IKPSEAEVAANARSR 295 Query: 308 SAKLRAGMRT 317 SA +R RT Sbjct: 296 SAVMRVARRT 305 >gi|254557010|ref|YP_003063427.1| cell division protein MraW [Lactobacillus plantarum JDM1] gi|254045937|gb|ACT62730.1| cell division protein MraW [Lactobacillus plantarum JDM1] Length = 319 Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 118/307 (38%), Positives = 170/307 (55%), Gaps = 13/307 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MG--SNVIALDRDPFAVSCGQ 75 +H VLL + IA LN P + +D T G GG+SR + +G ++ + D+D A+ Q Sbjct: 5 EHTTVLLHEAIAALNVRPDGIYVDCTLGGGGHSREILQQLGPEGHLYSFDQDQTAIDYNQ 64 Query: 76 ETMRDYKE--QFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + Y E Q + ++ F+ L+ + +G VDGVV+DLGVSS Q D RGFS+Q Sbjct: 65 SNLATYLERGQVTFIKSNFANLKTELNARGLDHVDGVVYDLGVSSPQFDDAARGFSYQHD 124 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM S ++A VVN DL RI GEEK + ++A I + R P TT Sbjct: 125 APLDMRMDQSQKLTAQTVVNTWPYADLVRIFYRYGEEKFSKQVARLIERERVVQPIVTTG 184 Query: 190 DLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L +I+ + ++ HPA R FQA+RI VNNE+ L L A + G + V+ Sbjct: 185 QLVEIIKNAIPARARRTGGHPAKRVFQAIRIAVNNELGVLETSLEQAIDLINVHGRVSVI 244 Query: 249 SFHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 +F SLEDRLVK F S ++ +IP+ P ++ +++K VVP+ ++ NRR+ Sbjct: 245 TFQSLEDRLVKTIFKEHSDLPELPPGLPVIPAEMQPD-YRLVSRKPVVPSDAEIEANRRA 303 Query: 307 RSAKLRA 313 RSAKLRA Sbjct: 304 RSAKLRA 310 >gi|171742509|ref|ZP_02918316.1| hypothetical protein BIFDEN_01621 [Bifidobacterium dentium ATCC 27678] gi|283456404|ref|YP_003360968.1| mraW S-adenosyl-methyltransferase mraW [Bifidobacterium dentium Bd1] gi|306822422|ref|ZP_07455800.1| S-adenosyl-methyltransferase MraW [Bifidobacterium dentium ATCC 27679] gi|309802480|ref|ZP_07696586.1| S-adenosyl-methyltransferase MraW [Bifidobacterium dentium JCVIHMP022] gi|171278123|gb|EDT45784.1| hypothetical protein BIFDEN_01621 [Bifidobacterium dentium ATCC 27678] gi|283103038|gb|ADB10144.1| mraW S-adenosyl-methyltransferase mraW [Bifidobacterium dentium Bd1] gi|304553967|gb|EFM41876.1| S-adenosyl-methyltransferase MraW [Bifidobacterium dentium ATCC 27679] gi|308220880|gb|EFO77186.1| S-adenosyl-methyltransferase MraW [Bifidobacterium dentium JCVIHMP022] Length = 343 Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 115/306 (37%), Positives = 169/306 (55%), Gaps = 13/306 (4%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74 H PVLL + + L+ PA PG V +D T G G+S +F K + +I +DRD A++ Sbjct: 8 HQPVLLRECVDLVAPALAKPGAVAVDCTLGLAGHSTAFLKASPEARLIGIDRDVEALALA 67 Query: 75 QETMRD--YKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK 129 M E+F A F + + D+ VD V DLG+SS+QID +RGFS+ Sbjct: 68 TRRMEQEGLAERFIPVHAAFDEFAHVLEDRNIDVVDAVFMDLGLSSLQIDETERGFSYSH 127 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM + ++A V+++ + DL RI GEE+ + +IA IV+RR++ P T+ Sbjct: 128 DAPLDMRMDVTQPLTARQVLSEYSFADLVRIFRTYGEERFSKQIAREIVRRRETEPLTTS 187 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ L+ + V + +PA R FQALRI VN E+++LA L L GG L+V Sbjct: 188 GQLNRLVDEVVPQAHRPAGNPAKRVFQALRIEVNGELDKLAGTLPQIANHLAVGGRLVVE 247 Query: 249 SFHSLEDRLVKKFFA-SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 S+HSLED+ VK F A V A +IP + P F+ +T+ + + ++A N RS Sbjct: 248 SYHSLEDKTVKTFMAQGLKADVPADMPVIPPDMQP-FFKELTRGAIKADETEIAMNPRSA 306 Query: 308 SAKLRA 313 S +LRA Sbjct: 307 SVRLRA 312 >gi|92114320|ref|YP_574248.1| methyltransferase [Chromohalobacter salexigens DSM 3043] gi|123265653|sp|Q1QVF9|RSMH_CHRSD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|91797410|gb|ABE59549.1| methyltransferase [Chromohalobacter salexigens DSM 3043] Length = 331 Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 119/302 (39%), Positives = 174/302 (57%), Gaps = 13/302 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H VLL+ + L P LD TFG GG+SR+ + S ++A+DRDP A++ G Sbjct: 28 HASVLLDGAVEALMTDPDGCYLDGTFGRGGHSRAILQRLSPQGRLLAIDRDPAALAEGA- 86 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 T D + F+L F++L D D + + GV+ D+GVSS Q+D RGFSF + GP Sbjct: 87 TWDDPR--FTLRHGRFAELDDIARDAALHRRLSGVLLDVGVSSPQLDDASRGFSFLRDGP 144 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G SA+D + + + +D++ + GEE+ A RIA AIV RR P T DL Sbjct: 145 LDMRMDPTQGESAADWLARVSERDMSDVFKRYGEERFARRIAKAIVARRGERPITHTADL 204 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + L+ K + + HPATR FQA+RI VN E+++L L +A ++L GG L+V+SFH Sbjct: 205 AELV-KAAHPAWEKGKHPATRVFQAIRIHVNGELDQLEAALAAALESLAPGGRLVVISFH 263 Query: 252 SLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDRLVK+F + G R + + ++ K P ++++A N R+RSA Sbjct: 264 SLEDRLVKRFIRDKVRGDTHLPRDLPIRDTQLNRRLAMVGKARRPDEDEIALNPRARSAV 323 Query: 311 LR 312 +R Sbjct: 324 MR 325 >gi|119026127|ref|YP_909972.1| S-adenosyl-methyltransferase MraW [Bifidobacterium adolescentis ATCC 15703] gi|263445943|sp|A1A2F7|RSMH_BIFAA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|118765711|dbj|BAF39890.1| S-adenosyl-methyltransferase [Bifidobacterium adolescentis ATCC 15703] Length = 343 Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 116/307 (37%), Positives = 171/307 (55%), Gaps = 15/307 (4%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSN--VIALDRD--PFAVS 72 H PVLL + L+ PA PG + +D T G G+S +F K N +I +DRD A++ Sbjct: 8 HQPVLLRDCVDLVAPALAKPGSIAVDCTLGLAGHSTAFLKASPNARLIGIDRDTEALALA 67 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQK 129 + M ++F+ A F + D+GVD V DLG+SS+QID +RGFS+ Sbjct: 68 TKRMEMEGLADRFTPVHAAFDDFSQVLSDQGVDKVNAVFMDLGLSSLQIDETERGFSYSH 127 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM + ++A V+ + + DL RI GEE+ + +IA IV+RR++ P T+ Sbjct: 128 DAPLDMRMDVTQPLTAEQVLAEYSFADLVRIFRAYGEERFSKQIAREIVRRRETEPLTTS 187 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ L+ + V + +PA R FQALRI VN E+++LA L L GG L+V Sbjct: 188 GQLNRLVDEVVPQAHRPAGNPAKRVFQALRIEVNGELDKLAGTLPQIANHLAVGGRLVVE 247 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 S+HSLED+ VK F ++ KV A M +P + P F+ +T+ + E++A N RS Sbjct: 248 SYHSLEDKTVKAFM-NQGLKVDAPADMPVVPPDMMP-FFKELTRGAIKADAEEIANNPRS 305 Query: 307 RSAKLRA 313 S +LRA Sbjct: 306 ASVRLRA 312 >gi|312871660|ref|ZP_07731752.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LEAF 3008A-a] gi|311092885|gb|EFQ51237.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LEAF 3008A-a] Length = 315 Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 119/312 (38%), Positives = 176/312 (56%), Gaps = 17/312 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H VLL + I LN V +DATFG GG++ K SN +I D+D +A+ +++ Sbjct: 5 HYSVLLHETIDNLNLKNDGVYVDATFGGGGHASYLLKQLSNGHLIGFDQDEYAIELAKKS 64 Query: 78 MRDY-----KEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + K Q SL F LQ + G+DG+ +DLGVSS Q D +RGFS++ Sbjct: 65 FSEVLKANSKPQLSLVHDNFGNLQQNLAKLGFIDGIDGIYYDLGVSSPQFDQPERGFSYR 124 Query: 129 KSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + LDMRM + A +VN + K+L+ IL G+EK A +IA IV +R P T Sbjct: 125 FNARLDMRMDQTKDLDAYKIVNTWSQKELSNILFKYGDEKYARQIAKNIVAKRAIKPITT 184 Query: 188 TQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T +L +I++ + F++ HPA +SFQA+RI VN+E+E L + L A + LK GG + Sbjct: 185 TFELVDIIKEAIPAFARRTGGHPAKKSFQAIRIAVNDELEVLEKSLLEAIEILKPGGRIC 244 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 V++F SLED++VKK F S V R M +P + P + + I++K +V T +++ N Sbjct: 245 VITFQSLEDKIVKKIFKKYSD-VDIPRGMPQVPDSLKPTL-KIISRKPIVATNKELEENN 302 Query: 305 RSRSAKLRAGMR 316 RS SAKLR + Sbjct: 303 RSHSAKLRVAEK 314 >gi|260881846|ref|ZP_05405354.2| S-adenosyl-methyltransferase MraW [Mitsuokella multacida DSM 20544] gi|260847818|gb|EEX67825.1| S-adenosyl-methyltransferase MraW [Mitsuokella multacida DSM 20544] Length = 330 Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 112/302 (37%), Positives = 163/302 (53%), Gaps = 9/302 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H+ V+LE+ + L + +D T G G+S ++ S +I +D+D A+ +E Sbjct: 10 HISVMLEETVKGLVTNKEGIYVDCTLGGAGHSHRIAELLSPKGRIIGIDQDEEAIEAAKE 69 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++D K + + + FS L++ + +G VDGVVFDLGVSS QID +RGFS+ PL Sbjct: 70 RLKDVKCRVDIVHSNFSHLEEILEAQGAPLVDGVVFDLGVSSHQIDTAERGFSYMHDAPL 129 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM SA DVVN + K+L RI GEE+ RIA IVK R P + T +L Sbjct: 130 DMRMDPEAKFSAYDVVNTYSEKELDRIFHDYGEERWGRRIAQFIVKERMKKPIERTGELV 189 Query: 193 SLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I K V + HPA R FQA+RI VN+E+ L + R+A LK GG + +++F Sbjct: 190 DIICKAVPKAVRQAANGHPAKRIFQAIRIEVNDELGILEKAFRTAVHHLKPGGRIAIITF 249 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDR+ K+ + + + H + K T +++A N RS+SAK Sbjct: 250 HSLEDRIAKQTLKEMARGCICPPELPVCVCHHKPEIRLLGKPKQATADELAHNSRSKSAK 309 Query: 311 LR 312 LR Sbjct: 310 LR 311 >gi|220904376|ref|YP_002479688.1| S-adenosyl-methyltransferase MraW [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|263447319|sp|B8IZT3|RSMH_DESDA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|219868675|gb|ACL49010.1| S-adenosyl-methyltransferase MraW [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 327 Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 126/329 (38%), Positives = 175/329 (53%), Gaps = 18/329 (5%) Query: 7 KTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIAL 64 +TMS T HV VL + +A L+P G LD T G GG++ + G + L Sbjct: 3 QTMSDTTEPT--RHVSVLPVETLAALDPRAGGRYLDGTLGMGGHASAILSSAPGIELCGL 60 Query: 65 DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCG 121 DRD A++ + + + + LF +S + + + G VDG + D+GVSS+Q+D Sbjct: 61 DRDEEALALAGQRLSSFGGRAHLFHCRYSDFAEALNELGWDKVDGALLDIGVSSLQLDEA 120 Query: 122 DRGFSFQKSGPLDMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFSF GPLDMRM + + SA VN+ + L + LGEE QA RIA AIV Sbjct: 121 ERGFSFYGDGPLDMRMDQNSAQPSAWHWVNRESFDKLKDCIATLGEEPQAGRIARAIVDA 180 Query: 180 RQSAPFQTTQDLSSLIQKT--VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 RQ TT L++L+++ + R HPATR+FQALR+ VN+E+ EL + L Sbjct: 181 RQKNTIDTTGQLAALVERAYPAAWRAKARRHPATRTFQALRMAVNDELGELRRFLDQILT 240 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVP 295 L GG L V++FHSLEDR+VK+ RH IP H + + KK V Sbjct: 241 WLPIGGRLAVITFHSLEDRMVKQAMRHWVEGCRCPRH-IPRCICGHQPEVRILHKKPVQA 299 Query: 296 TQEDVAFNRRSRSAKLRAGMRTVERSIED 324 E++A N R+ SAKLRA VE+ ED Sbjct: 300 GPEELAANSRAGSAKLRA----VEKIAED 324 >gi|171778125|ref|ZP_02919382.1| hypothetical protein STRINF_00217 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171283107|gb|EDT48531.1| hypothetical protein STRINF_00217 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 339 Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 118/323 (36%), Positives = 179/323 (55%), Gaps = 19/323 (5%) Query: 6 CKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VI 62 K M+ HH + VLL + + +L+ P + +DAT G G+S K+G N + Sbjct: 21 MKGMTKDFHH-----ITVLLHETVDMLDIEPDGIYVDATLGGAGHSEYLLSKLGPNGHLY 75 Query: 63 ALDRDPFAVSCGQETMRDYKE--QFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQ 117 A D+D A+ Q ++DY E Q + + F L + GV DG+++DLGVSS Q Sbjct: 76 AFDQDQTAIDNAQIRLKDYIEKGQVTFIKDNFRNLASNLAMHGVTEIDGILYDLGVSSPQ 135 Query: 118 IDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 +D +RGFS++K PLDMRM+ ++A DVVN + DL RI GE+K + +IA I Sbjct: 136 LDERERGFSYKKDAPLDMRMNREQDLTAYDVVNTYDYYDLVRIFYKYGEDKFSKQIARKI 195 Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRS 234 + RQ P +TT +L+ +I K+ +K + HPA + FQA+RI VN+E+ + ++ Sbjct: 196 EQARQEKPIETTTELAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQ 254 Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVV 293 A L G + V++FHSLEDRL K+ F S +V IP + P + + +K + Sbjct: 255 AIDLLAVDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDMQPKL-TLVNRKPI 313 Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316 +P QE++ N RS SAKLR + Sbjct: 314 LPRQEELEANNRSHSAKLRVARK 336 >gi|325662359|ref|ZP_08150968.1| ribosomal RNA small subunit methyltransferase H 2 [Lachnospiraceae bacterium 4_1_37FAA] gi|331086162|ref|ZP_08335244.1| ribosomal RNA small subunit methyltransferase H 2 [Lachnospiraceae bacterium 9_1_43BFAA] gi|325471361|gb|EGC74584.1| ribosomal RNA small subunit methyltransferase H 2 [Lachnospiraceae bacterium 4_1_37FAA] gi|330406321|gb|EGG85835.1| ribosomal RNA small subunit methyltransferase H 2 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 316 Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 109/313 (34%), Positives = 172/313 (54%), Gaps = 11/313 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H VLLE+ + LN P + +D T G GG++ CK ++ I +D+D A+ Sbjct: 5 HKSVLLEETVNGLNIKPDGIYVDGTLGGGGHAEEVCKQLNDKGSFIGIDQDAAAIEAASV 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + E+ ++ ++ + ++ + ++G VDG++ DLGVSS Q+D +RGFS++ PL Sbjct: 65 RLAGFGERVTIIRSNYCDMKSRLRERGIDKVDGIILDLGVSSYQLDTAERGFSYRVDAPL 124 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM +A D+VN + +L RI+ GE+K A IA IV R+ AP +TT L Sbjct: 125 DMRMDRRQEKTARDIVNTYSEMELFRIIRDYGEDKFAKNIAKHIVMEREKAPIETTGQLC 184 Query: 193 SLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+ + F KN HPA R+FQA+RI +N E+E L L + L G + +++F Sbjct: 185 EIIRHAIPMKFQKNTG-HPAKRTFQAIRIELNRELEVLRDTLDEMIELLNDNGRICIITF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK F H + + + + ITKK ++P ++++ N RS+SA Sbjct: 244 HSLEDRIVKGIFKKNENPCTCPSHFPVCVCGNVSKGKVITKKPILPGEQELEENSRSKSA 303 Query: 310 KLRAGMRTVERSI 322 KLR R V + Sbjct: 304 KLRIFERHVNTKV 316 >gi|257066696|ref|YP_003152952.1| S-adenosyl-methyltransferase MraW [Anaerococcus prevotii DSM 20548] gi|256798576|gb|ACV29231.1| S-adenosyl-methyltransferase MraW [Anaerococcus prevotii DSM 20548] Length = 306 Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 115/311 (36%), Positives = 168/311 (54%), Gaps = 22/311 (7%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 +H+PVL ++ I LN P + LD T G GG+S+ + S+ +IA+D+D A+ + Sbjct: 4 EHIPVLAKETIENLNINPDGIYLDLTLGKGGHSKMILERLSDKGRLIAIDQDKEAIEAAK 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E +RD+ + + F + + D G +DG + D+GVSS QID DRGFS+ K GP Sbjct: 64 ENLRDFS-NVTFVNSNFENFEKALEDLGLDLIDGALMDIGVSSYQIDNADRGFSYMKDGP 122 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ ++A +VN+ + +L RI GEE+ A IA IV R TT L Sbjct: 123 LDMRMNQDNELTAEVIVNEYSQDELERIFFEYGEERFARAIARNIVNLRDEERIDTTFKL 182 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++ K++ K+ HP R FQALRI VN E+E L + LK G + +++FH Sbjct: 183 REIVAKSI---KSQDAHPEKRVFQALRIEVNRELEVLENTIERVVDHLKKDGRIAIITFH 239 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSN------AHPAVFQSITKKVVVPTQEDVAFNRR 305 SLEDR+VK F K +A + P H A + IT+K V ++ ++ N R Sbjct: 240 SLEDRIVKNKF-----KDLARDCICPPEFPVCVCDHRAKIKIITRKPVTASKAELRDNSR 294 Query: 306 SRSAKLRAGMR 316 S+ AKLR G R Sbjct: 295 SKPAKLRVGQR 305 >gi|78065113|ref|YP_367882.1| S-adenosyl-methyltransferase MraW [Burkholderia sp. 383] gi|88909190|sp|Q39JX8|RSMH_BURS3 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|77965858|gb|ABB07238.1| methyltransferase [Burkholderia sp. 383] Length = 313 Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 120/311 (38%), Positives = 183/311 (58%), Gaps = 21/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VLL++ + L P + +D TFG GG+SR+ G +IA D+DP A+ Q Sbjct: 7 HRTVLLDEAVESLVTRPDGIYVDGTFGRGGHSRAVLARLAPGGRLIAFDKDPRAIETAQ- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + D + FS+ +F+ ++D + +GV+ GV+ DLGVSS Q+D RGFSF+ GPL Sbjct: 66 GIEDAR--FSIVHDSFASMRDALAARGVEKVSGVLLDLGVSSPQVDDPARGFSFRADGPL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTT 188 DMRM + G SA++ + +A+V++LT ++ GEE+ A +IA A+V RR + P TT Sbjct: 124 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDTT 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ ++ V + + PATR+FQA+RI VN E+ +L L +A L+ GG L+V+ Sbjct: 184 GELAQIVGHVVKTREKGK-DPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVI 242 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNRR 305 SFHSLEDR+VK+F + + AV +P A S K++ P++ +VA N R Sbjct: 243 SFHSLEDRIVKRFMQAHA-SAPAVDRRLPIRA--VDLPSPPLKIISRQFPSEAEVAANPR 299 Query: 306 SRSAKLRAGMR 316 +RSA +R R Sbjct: 300 ARSAVMRIAER 310 >gi|154488900|ref|ZP_02029749.1| hypothetical protein BIFADO_02209 [Bifidobacterium adolescentis L2-32] gi|154083037|gb|EDN82082.1| hypothetical protein BIFADO_02209 [Bifidobacterium adolescentis L2-32] Length = 343 Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 116/307 (37%), Positives = 171/307 (55%), Gaps = 15/307 (4%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSN--VIALDRD--PFAVS 72 H PVLL + L+ PA PG + +D T G G+S +F K N +I +DRD A++ Sbjct: 8 HQPVLLRDCVDLVAPALAKPGSIAVDCTLGLAGHSTAFLKASPNARLIGIDRDTEALALA 67 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQK 129 + M ++F+ A F + D+GVD V DLG+SS+QID +RGFS+ Sbjct: 68 TKRMEMDGLADRFTPVHAAFDDFSQVLSDQGVDKVNAVFMDLGLSSLQIDETERGFSYSH 127 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM + ++A V+ + + DL RI GEE+ + +IA IV+RR++ P T+ Sbjct: 128 DAPLDMRMDVTQPLTAEQVLAEYSFADLVRIFRTYGEERFSKQIAREIVRRRETEPLTTS 187 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ L+ + V + +PA R FQALRI VN E+++LA L L GG L+V Sbjct: 188 GQLNRLVDEVVPQAHRPAGNPAKRVFQALRIEVNGELDKLAGTLPQIANHLAVGGRLVVE 247 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 S+HSLED+ VK F ++ KV A M +P + P F+ +T+ + E++A N RS Sbjct: 248 SYHSLEDKTVKAFM-NQGLKVDAPADMPVVPPDMMP-FFKELTRGAIKADAEEIANNPRS 305 Query: 307 RSAKLRA 313 S +LRA Sbjct: 306 ASVRLRA 312 >gi|187479357|ref|YP_787382.1| S-adenosyl-methyltransferase MraW [Bordetella avium 197N] gi|123738495|sp|Q2KVE4|RSMH_BORA1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|115423944|emb|CAJ50496.1| S-adenosyl-methyltransferase [Bordetella avium 197N] Length = 355 Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 126/331 (38%), Positives = 185/331 (55%), Gaps = 37/331 (11%) Query: 19 DHVPVLLEKVI-----------------------ALLNPAPGKVILDATFGAGGYSRSFC 55 +H PVLLE + AL A G + +D TFG GG+SR Sbjct: 4 EHRPVLLEPTVDALLQADFGGRGASRARPRDEAAALTRQATG-IFVDGTFGRGGHSRELL 62 Query: 56 -KMG--SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVF 109 ++G + ++ D+DP A++ Q + + ++ F+ + + + +G+ DGV+ Sbjct: 63 GRLGPQARLVVFDKDPEAIAVAQALAAE-DARVTVVHGGFATMTEELAARGIERIDGVML 121 Query: 110 DLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQ 168 DLGVSS QID DRGFSF + GPLDMRM S G + +D + QA+V+++ ++ GEE+ Sbjct: 122 DLGVSSPQIDDADRGFSFMREGPLDMRMDTSRGPTVADWLAQASVEEMREVIADYGEERF 181 Query: 169 ASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEEL 228 A ++A AI RR + P TT +L+ + V + + HPATR+FQALRI++N E+EEL Sbjct: 182 AFQVAKAIAARRATRPLHTTLELAECVASAVRTREKGQ-HPATRTFQALRIYINRELEEL 240 Query: 229 AQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQ 286 A+ L SA + L GG L V+SFHSLEDR+VK+ A+ + A + S + Q Sbjct: 241 ARALASAIELLVPGGRLAVISFHSLEDRMVKQCIAAAARPAAAHPRLPLRESELPQPILQ 300 Query: 287 SITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 ++ K VV +VA N RSRSA LRA RT Sbjct: 301 TLGK--VVADDAEVAGNARSRSAILRAAERT 329 >gi|300088323|ref|YP_003758845.1| S-adenosyl-methyltransferase MraW [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528056|gb|ADJ26524.1| S-adenosyl-methyltransferase MraW [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 356 Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 113/302 (37%), Positives = 173/302 (57%), Gaps = 21/302 (6%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69 + HT DH PV+L + + L PG +D T GAGG++R+ M G ++ LD DP Sbjct: 1 MSHT--DHTPVMLRESLQALAVGPGGRYVDGTTGAGGHARAILDMSAPGGQLLGLDADPE 58 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQ------DYVPDKGVDGVVFDLGVSSMQIDCGDR 123 ++ E + Y+ F L A FS+++ D+ P V G++ DLG++SMQ+ R Sbjct: 59 SLKIASENLSGYEGSFRLVNANFSRMEEICRQYDFYP---VHGIILDLGLASMQLTETGR 115 Query: 124 GFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GFSFQ PLDMR S ++A+++VN + ++ IL GEE+++ IA IV+ R Sbjct: 116 GFSFQYDAPLDMRFSPDQKLTAAEIVNTWSETEIADILYRYGEERRSRAIARRIVESR-- 173 Query: 183 APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 P +TT L++L+ KT+ ++ IHPATR+FQALRI VN+E+ L L A + L Sbjct: 174 -PLKTTTQLANLVAKTI--GRSGDIHPATRTFQALRIAVNDELARLEDTLDQAVRLLGYS 230 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSN-AHPAVFQSITKKVVVPTQEDVA 301 G L+V+++HSLEDR+VK+FF + + + H A + + +KV+ PT E+V Sbjct: 231 GRLVVIAYHSLEDRIVKQFFQREATDCVCPVELPECRCGHVARLRVLNRKVMTPTDEEVR 290 Query: 302 FN 303 N Sbjct: 291 AN 292 >gi|139437204|ref|ZP_01771364.1| Hypothetical protein COLAER_00343 [Collinsella aerofaciens ATCC 25986] gi|133776851|gb|EBA40671.1| Hypothetical protein COLAER_00343 [Collinsella aerofaciens ATCC 25986] Length = 321 Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 119/314 (37%), Positives = 175/314 (55%), Gaps = 22/314 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV------IALDRDPFAV-S 72 H PV+L +V+ L G V+ D T G G+S KM + V + +D+D A+ + Sbjct: 12 HEPVMLGEVLESLRLKSGSVVCDCTLGGAGHS---VKMAAQVGETGLLLGVDQDDMALEA 68 Query: 73 CGQETMRDYKE-QFSLFQATFSQLQDY-----VPDKGVDGVVFDLGVSSMQIDCGDRGFS 126 G R+ L + F L + VP GVDG +FDLGVSS Q+D RGFS Sbjct: 69 AGARLDREVPGVPHQLLKGNFGDLDELLCSAEVP--GVDGFLFDLGVSSPQLDIPGRGFS 126 Query: 127 FQKSGPLDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 + + PLDMRM ++A++V+N N DL RIL + GEEK AS+IA IV+RR+ P Sbjct: 127 YNEDAPLDMRMDPGNNTLNAAEVINTYNEHDLARILRVYGEEKFASQIAREIVRRREQEP 186 Query: 185 FQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 +TT +I+ + ++ + HPA +SFQA+RI VN+E++ L +GL +A + L GG Sbjct: 187 IETTGQFVEIIKAGIPAAARRHGGHPAKKSFQAIRIEVNHELDVLERGLDAATRWLNPGG 246 Query: 244 LLIVVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 + V+S+HSLEDR+VK F S G + + + + IT+K +V ++V Sbjct: 247 RICVISYHSLEDRIVKNHFKEMSQGCTCPPEIPVCVCGNVPILKVITRKPLVAQPDEVER 306 Query: 303 NRRSRSAKLRAGMR 316 N R+RSAK+R R Sbjct: 307 NPRARSAKIRVAQR 320 >gi|54293889|ref|YP_126304.1| hypothetical protein lpl0945 [Legionella pneumophila str. Lens] gi|54296934|ref|YP_123303.1| S-adenosyl-methyltransferase MraW [Legionella pneumophila str. Paris] gi|68565457|sp|Q5WXZ4|RSMH_LEGPL RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|68565459|sp|Q5X6J0|RSMH_LEGPA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|68565463|sp|Q5ZX19|RSMH_LEGPH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|53750719|emb|CAH12126.1| hypothetical protein lpp0975 [Legionella pneumophila str. Paris] gi|53753721|emb|CAH15179.1| hypothetical protein lpl0945 [Legionella pneumophila str. Lens] Length = 308 Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 119/312 (38%), Positives = 173/312 (55%), Gaps = 18/312 (5%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSC 73 + H VLL + I L + D TFG GG+SR S+ + A+D+D AV Sbjct: 1 MAKHQSVLLHESIKGLAIKADGIYFDGTFGRGGHSREILNHLSDKGRLFAIDKDLDAV-- 58 Query: 74 GQETMRDY---KEQFSLFQATFSQLQDYVPDKGV----DGVVFDLGVSSMQIDCGDRGFS 126 + +DY ++F +F +F+Q++++ GV DG++ DLGVSS Q+D +RGFS Sbjct: 59 --QYAKDYFGLDKRFQIFHGSFAQIKEFASQAGVIGAVDGILLDLGVSSPQLDNPERGFS 116 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 F GPLDMRM + I+A++ VN+A V +L + GEE+ A RIA AIV R+ P Sbjct: 117 FMLQGPLDMRMDLTQSINAANFVNEAEVNELAHVFRAYGEERFAGRIAKAIVDARKLKPI 176 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT +L+ ++++ + ++ HPATR FQA+RI VN E+ +L+ L L GG L Sbjct: 177 TTTLELAEIVKEANPKWEKHK-HPATRVFQAIRIHVNQELTDLSNCLEQCLDVLGPGGRL 235 Query: 246 IVVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 V+SFHSLEDR+VK+F + G V I F+ + K V P ++ N Sbjct: 236 AVISFHSLEDRIVKQFMRDKEQGNRPPVEVPIKYEELKTNFKKVG-KAVKPQSSEIKENV 294 Query: 305 RSRSAKLRAGMR 316 RSRSA LR G + Sbjct: 295 RSRSAVLRIGEK 306 >gi|187779894|ref|ZP_02996367.1| hypothetical protein CLOSPO_03490 [Clostridium sporogenes ATCC 15579] gi|187773519|gb|EDU37321.1| hypothetical protein CLOSPO_03490 [Clostridium sporogenes ATCC 15579] Length = 309 Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 116/305 (38%), Positives = 165/305 (54%), Gaps = 9/305 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+ VLLE+ I LN + +D T G GG+S+ K S+ +I +D+D A+ +E Sbjct: 5 HISVLLEETIDSLNIKEDGIYVDCTLGGGGHSKEILKKLSHKGKLIGIDQDTSALKAAKE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++DY E F + + + + VDG+V DLGVSS Q+D RGFS+ K PL Sbjct: 65 RLKDY-ENVIYVHNNFYNIDSILEELDIEKVDGIVMDLGVSSYQLDEASRGFSYMKDAPL 123 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ SA DVVN ++L +IL GEEK + +IA IV+RR +TT +L Sbjct: 124 DMRMNRDENFSAYDVVNSYGEEELFKILKNYGEEKFSRKIARFIVERRTEKSIETTGELV 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+K + HPA R+FQA+RI VN E++ L + + + L G L +++FHS Sbjct: 184 EIIKKAIPAKFQREGHPAKRTFQAIRIEVNKELQILNKAIEDSVNRLNKDGRLSIITFHS 243 Query: 253 LEDRLVK-KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK KF I + ITKK + P++E+ N RSRSAKL Sbjct: 244 LEDRIVKVKFKELEKPCTCPPSFPICVCGKKPQIKIITKKPMEPSKEEKEINSRSRSAKL 303 Query: 312 RAGMR 316 R R Sbjct: 304 RVCRR 308 >gi|227509375|ref|ZP_03939424.1| S-adenosyl-methyltransferase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227191087|gb|EEI71154.1| S-adenosyl-methyltransferase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 315 Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 111/309 (35%), Positives = 174/309 (56%), Gaps = 12/309 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77 HV VLL + + L+ P +DAT G GG++ K ++ + D+D A+S Q+ Sbjct: 6 HVTVLLHEAVDGLDVDPNGTYVDATLGGGGHTTEILKRIDKGHLYSFDQDEEAISYNQQH 65 Query: 78 MRDYKE--QFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +R Y E + +L F ++ + D+G+ DG+V+DLGVSS Q D RGFS++ Sbjct: 66 LRQYVENDKLTLIHDNFRNIKGALADRGISKIDGIVYDLGVSSPQFDEAGRGFSYRFEAR 125 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + A V+N+ + L RI GEEK + +IA I + R+ P TT DL Sbjct: 126 LDMRMDQDNPVDAWKVINEWPYEKLVRIFYRYGEEKFSKQIARRIERTREDHPINTTTDL 185 Query: 192 SSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +LI++ + ++ + HPA + FQA+RI VN+E+ L L + + L GG + V++F Sbjct: 186 VTLIKEAIPAAARRHGGHPAKKVFQAVRIAVNDELSALEDSLEQSLELLAVGGRISVITF 245 Query: 251 HSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SLEDRLVK F ++ ++ +IP P ++ IT+K ++P ++++A N R+ S Sbjct: 246 QSLEDRLVKTMFKEKASLPELPPNLPVIPKELQPK-YKLITRKPIIPNEDELADNHRAHS 304 Query: 309 AKLRAGMRT 317 AKLR RT Sbjct: 305 AKLRIIERT 313 >gi|261378431|ref|ZP_05983004.1| S-adenosyl-methyltransferase MraW [Neisseria cinerea ATCC 14685] gi|269145209|gb|EEZ71627.1| S-adenosyl-methyltransferase MraW [Neisseria cinerea ATCC 14685] Length = 319 Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 122/311 (39%), Positives = 174/311 (55%), Gaps = 20/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQE 76 H+ VLL + + L V +D TFG GG+SR ++G +I D+DP A++ +E Sbjct: 9 HITVLLHEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDTGRLIVFDKDPQAIAVAEE 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 R K + S+ F+ Q + D G VDG +FDLGVSS QID RGFSF+ PL Sbjct: 69 LARSDK-RVSVVHGGFASFQTALDDLGIGDVDGALFDLGVSSPQIDDAVRGFSFRFDAPL 127 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + G+SA++ + A+ +DL ++ GEE+ + +IA AIV +R P TT L+ Sbjct: 128 DMRMDTTRGMSAAEWIASASEQDLHEVIKNYGEERFSRQIARAIVAQRTENPIDTTGKLA 187 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 + + V + + PATR+FQA+RIF+N E+EE+ L LK GG L V++FHS Sbjct: 188 KIAAENVRTRERGQ-DPATRTFQAVRIFINRELEEVEAVLPQVMCRLKEGGRLAVIAFHS 246 Query: 253 LEDRLVKKFFASRS-----GKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 LEDR+VK+F S + AVR +P AV ++I P +E+ N R+ Sbjct: 247 LEDRIVKQFVRKYSQHAPLPRWAAVREADLPEPPLKAVGKAIK-----PCEEETVANPRA 301 Query: 307 RSAKLRAGMRT 317 RSA LR RT Sbjct: 302 RSAVLRVAERT 312 >gi|255325352|ref|ZP_05366458.1| S-adenosyl-methyltransferase MraW [Corynebacterium tuberculostearicum SK141] gi|255297917|gb|EET77228.1| S-adenosyl-methyltransferase MraW [Corynebacterium tuberculostearicum SK141] Length = 346 Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 118/316 (37%), Positives = 176/316 (55%), Gaps = 24/316 (7%) Query: 20 HVPVLLEKVIALLNP---APGK--VILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVS 72 HVPV+ E++ LL P A G V++DAT GAGG++R F + + VI +DRD A+ Sbjct: 16 HVPVMRERMADLLRPQVEAAGDKAVLVDATLGAGGHTRYFLESFPKARVIGVDRDKQALR 75 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDK-----------GVDGVVFDLGVSSMQIDCG 121 E + Y ++F A F +L + + G+ G +FDLGVSSMQ+D Sbjct: 76 NATERLAPYGDRFVGVNARFDELGSAIAEGEGDIFDSARTVGIAGALFDLGVSSMQLDQA 135 Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 DRGF+++ PLDMRM S GI+A+DV+N DL R+L G+E+ A +IA A++K R Sbjct: 136 DRGFAYKADAPLDMRMDPSQGITAADVLNTYTHGDLARVLKTYGDERFAGKIASAVLKER 195 Query: 181 QSAPFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 PF+ + L L+ + ++ HPA R+FQALR+ VN E+E + L +AL Sbjct: 196 DKEPFENSARLVELLYDVIPAATRRTGGHPAKRTFQALRVEVNRELEAIENVLPVITQAL 255 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFAS-RSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQ 297 GG + +S+ SLEDR+VK F + K A M +P A F+ +T+ ++ Sbjct: 256 SEGGRAVFMSYQSLEDRIVKAAFKELTTSKTPAGLPMDLPGTAPK--FKIVTRGAEKASE 313 Query: 298 EDVAFNRRSRSAKLRA 313 E+V N R+ S ++RA Sbjct: 314 EEVTENSRAASVRVRA 329 >gi|261401195|ref|ZP_05987320.1| S-adenosyl-methyltransferase MraW [Neisseria lactamica ATCC 23970] gi|269208876|gb|EEZ75331.1| S-adenosyl-methyltransferase MraW [Neisseria lactamica ATCC 23970] Length = 319 Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 121/306 (39%), Positives = 169/306 (55%), Gaps = 10/306 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMG--SNVIALDRDPFAVSCGQE 76 H+ VL + + L V +D TFG GG+SR ++G ++ D+DP AV+ +E Sbjct: 9 HITVLPYEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLVVFDKDPRAVAAAEE 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 R K + S+ F+ Q + D G VDG +FDLGVSS QID RGFSF+ PL Sbjct: 69 LARSDK-RVSVVHGGFASFQTALDDLGIGDVDGALFDLGVSSPQIDDAARGFSFRFDAPL 127 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + G+SA++ + A+ +DL ++ GEE+ + +IA AIV +R P TT+ L+ Sbjct: 128 DMRMDTTRGMSAAEWIASASEQDLHEVIKNYGEERFSRQIARAIVAQRAENPIDTTRKLA 187 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 L + V + + PATR+FQA+RIF+N E+EE+ L LK GG L V++FHS Sbjct: 188 QLAAQNVRTRERGQ-DPATRTFQAVRIFINRELEEVEAVLPQVMCRLKQGGRLAVIAFHS 246 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK+F S R A P I K + P +VA N R+RSA L Sbjct: 247 LEDRIVKQFVGKYSRHAPLPRWAAVREADLPEPPLKIVGKALKPGGAEVAANPRARSAVL 306 Query: 312 RAGMRT 317 R RT Sbjct: 307 RVAERT 312 >gi|299065600|emb|CBJ36772.1| S-adenosyl-dependent methyl transferase [Ralstonia solanacearum CMR15] Length = 319 Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 119/313 (38%), Positives = 183/313 (58%), Gaps = 21/313 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VL ++ + L + +D TFG GG+SR + G +IA D+DP A++ Sbjct: 11 HQTVLRDEAVDALLWRDDGIYIDGTFGRGGHSRLILERLGSGGRLIAFDKDPAAITEAG- 69 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 T+ D + F++ +F+Q+ + +G V GV+ DLG+SS QID G RGFSF+ GPL Sbjct: 70 TVEDAR--FAIEHDSFAQMGSALDARGIGRVAGVLLDLGISSPQIDEGARGFSFRMDGPL 127 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTT 188 DMRM + GI+A+ + +A+ +D+ R++ GEE+ A +IA AIV RR+ + P T Sbjct: 128 DMRMDTTRGITAAQWLAEADERDIARVIRDYGEERFAVQIAKAIVARRRESGTRGPLDRT 187 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L++L+ + V + + PATR+FQALRI +N E+ +L GL++A + L+ GG L+V+ Sbjct: 188 SELAALVAQAVKTREKGQ-DPATRTFQALRIHINQELADLETGLKAAFERLEQGGRLVVI 246 Query: 249 SFHSLEDRLVKKF---FASRSGKVMAVRHMIPSNAH--PAVFQSITKKVVVPTQEDVAFN 303 SFHSLEDR+VK+F A P AH PA + + V P++ +V+ N Sbjct: 247 SFHSLEDRIVKRFMQALARPEQSAAPEMRRAPLRAHELPAPQLRLLGR-VRPSEAEVSAN 305 Query: 304 RRSRSAKLRAGMR 316 R+RSA +R R Sbjct: 306 PRARSAIMRVAER 318 >gi|308271432|emb|CBX28040.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [uncultured Desulfobacterium sp.] Length = 312 Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 108/312 (34%), Positives = 172/312 (55%), Gaps = 20/312 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQE 76 H+PV+ ++VI L+ PGK+ D T G G++++ C K+ N ++ +D+D A+ ++ Sbjct: 5 HIPVMTKEVIHYLDCKPGKIYADCTIGGSGHAKAICEKIMPNGILVGIDQDKDAIENAKK 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + LF F L +++ VDG+V DLG+S QID RGFSF+ + PL Sbjct: 65 ILFPHLPNIHLFHGNFVNLSEFLLKCNITKVDGIVLDLGLSLHQIDSSKRGFSFKNTEPL 124 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ S I+A +++N+ + +L +++ GEE A IA IVK R+ +T +L Sbjct: 125 DMRMNTDSDINAGNLINKLDEVNLWKLIRDYGEEPWARNIARNIVKARKDCEIKTNAELV 184 Query: 193 SLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I ++ +IHPATR F ALRI VNNE+E L++ + + L G L V++F Sbjct: 185 KIISDSIPKKIQYKQKIHPATRVFMALRIAVNNELERLSEFMDNVADLLNPEGRLCVLTF 244 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV------FQSITKKVVVPTQEDVAFNR 304 HSLEDR+VK+ + M + P N + +++ KK + P +E+ N Sbjct: 245 HSLEDRIVKQKI-----REMEKECVCPPNFPKCICNKIKLVRAVNKKAIAPGKEETDINP 299 Query: 305 RSRSAKLRAGMR 316 +RSAKLR R Sbjct: 300 MARSAKLRVAER 311 >gi|300690333|ref|YP_003751328.1| S-adenosyl-dependent methyl transferase [Ralstonia solanacearum PSI07] gi|299077393|emb|CBJ50018.1| S-adenosyl-dependent methyl transferase [Ralstonia solanacearum PSI07] Length = 319 Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 120/313 (38%), Positives = 181/313 (57%), Gaps = 21/313 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VL ++ + L + +D TFG GG+SR + G +IA D+DP A++ Sbjct: 11 HQTVLRDEAVDALLWRDDGIYIDGTFGRGGHSRLILERLGPGGRLIAFDKDPAAITEAG- 69 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 T+ D + F++ +F+ L + +G V GV+ DLG+SS QID G RGFSF+ GPL Sbjct: 70 TVEDAR--FAIEHDSFAHLDAALDARGIGRVAGVLLDLGISSPQIDEGARGFSFRMDGPL 127 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTT 188 DMRM + GI+A+ + +A+ +D+ R++ GEE+ A +IA AIV RR + P T Sbjct: 128 DMRMDTTRGITAAQWLAEADARDIARVIRDYGEERFAVQIAKAIVARRSESGTRGPLDRT 187 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L++L+ + V + + PATR+FQALRI VN E+ +L GL++A + L+ GG L+V+ Sbjct: 188 SELAALVAQAVKTREKGQ-DPATRTFQALRIHVNQELADLETGLKAAFERLEQGGRLVVI 246 Query: 249 SFHSLEDRLVKKF---FASRSGKVMAVRHMIPSNAH--PAVFQSITKKVVVPTQEDVAFN 303 SFHSLEDR+VK+F A P AH PA + + V P++ +V+ N Sbjct: 247 SFHSLEDRIVKRFMQALARPEQSTAPEMRRAPLRAHELPAPQLRLLGR-VRPSEAEVSAN 305 Query: 304 RRSRSAKLRAGMR 316 R+RSA +R R Sbjct: 306 PRARSAIMRVAER 318 >gi|332527095|ref|ZP_08403175.1| 16S rRNA m(4)C1402 methyltranserfase [Rubrivivax benzoatilyticus JA2] gi|332111526|gb|EGJ11508.1| 16S rRNA m(4)C1402 methyltranserfase [Rubrivivax benzoatilyticus JA2] Length = 313 Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 125/316 (39%), Positives = 180/316 (56%), Gaps = 17/316 (5%) Query: 11 SAIHHTIGDHVPVLL-EKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDR 66 +A+ T H VLL E V AL+ A G + +D TFG GG++R+ S V+A DR Sbjct: 2 TAVTQTGRAHTTVLLAEAVEALVTQADG-LYVDGTFGRGGHTRALLAALSPRARVLAFDR 60 Query: 67 DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDR 123 DP +F++ A+F +++ + +GV GV+ DLGVSS QID +R Sbjct: 61 DP---EAIAAAAAIDDPRFTICHASFGAMREELAARGVGQVQGVLLDLGVSSPQIDTPER 117 Query: 124 GFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GFSF+ PLDMRM + G +A+D + +A+ + + +++ GEE+ A +IA A+V RRQ Sbjct: 118 GFSFRFDAPLDMRMDTTRGETAADFLARADERHIAQVIRDYGEERFALQIAKAVVARRQG 177 Query: 183 AP-FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 +TT +LS+L+ + V + + PATR+FQALRIFVN E+E L QGL +A + L Sbjct: 178 GDQLRTTGELSALVARAVKTREPGQ-DPATRTFQALRIFVNAELEALEQGLSAALQLLAP 236 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 GG L+V+SFHSLEDR+VK F S R + A P + V P ++V Sbjct: 237 GGRLVVISFHSLEDRIVKNFITRESRDEFDRRAPM---APPRALKLKALARVKPGDDEVR 293 Query: 302 FNRRSRSAKLRAGMRT 317 N R+RSA +R RT Sbjct: 294 ANPRARSAVMRVAERT 309 >gi|299821551|ref|ZP_07053439.1| S-adenosyl-methyltransferase [Listeria grayi DSM 20601] gi|299817216|gb|EFI84452.1| S-adenosyl-methyltransferase [Listeria grayi DSM 20601] Length = 313 Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 105/303 (34%), Positives = 173/303 (57%), Gaps = 11/303 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76 H VLL + + +L+ P + +DAT G G+S S ++ A D+D A+ +E Sbjct: 7 HDTVLLHETVDMLDIKPDGIYVDATLGGAGHSEYLLSKLNKKGHLYAFDQDQTAIDHAKE 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + Y + ++ F +++ + + GV DG+++DLGVSS Q+D +RGFS+ + L Sbjct: 67 RLAPYTGSVTFVKSNFRFMKEALAEHGVTEVDGILYDLGVSSPQLDVRERGFSYHQDAEL 126 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM ++A +VVN+ +DL RI GEEK + +IA I +RR +TT +L Sbjct: 127 DMRMDQEQSLTAKEVVNEWRYEDLVRIFFQYGEEKFSKQIAREIERRRSEKTIETTGELV 186 Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + ++ HP R FQA+RI VN+E++ +++ L A LK G + V++FH Sbjct: 187 DIIKTAIPAPARRKGGHPGKRVFQAIRIAVNDELDAVSESLEKALLLLKTNGRISVITFH 246 Query: 252 SLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+ K+ F ++ R + IP P F+ +T+K ++P++ ++A N R+RSA Sbjct: 247 SLEDRITKQLFKQKTTAQETPRGLPVIPDEYQPD-FELVTRKPILPSEAEMATNNRARSA 305 Query: 310 KLR 312 KLR Sbjct: 306 KLR 308 >gi|308374510|ref|ZP_07667801.1| hypothetical protein TMFG_01127 [Mycobacterium tuberculosis SUMu006] gi|308341663|gb|EFP30514.1| hypothetical protein TMFG_01127 [Mycobacterium tuberculosis SUMu006] gi|323719262|gb|EGB28406.1| hypothetical protein TMMG_01445 [Mycobacterium tuberculosis CDC1551A] Length = 328 Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 113/317 (35%), Positives = 173/317 (54%), Gaps = 20/317 (6%) Query: 24 LLEKVIALLNPAPGK--------VILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSC 73 + ++ LL PA + V+LDAT GAGG++ F + G +I LDRDP A+ Sbjct: 1 MAQRCFELLTPALTRYYPDGSQAVLLDATIGAGGHAERFLEGLPGLRLIGLDRDPTALDV 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSSMQIDCGDRGFSF 127 + + + ++ +L + L + + G VDG++FDLGVSSMQ+D +RGF++ Sbjct: 61 ARSRLVRFADRLTLVHTRYDCLGAALAESGYAAVGSVDGILFDLGVSSMQLDRAERGFAY 120 Query: 128 QKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 PLDMRM + ++A+D+VN + L IL GEE+ A RIA IV+RR PF Sbjct: 121 ATDAPLDMRMDPTTPLTAADIVNTYDEAALADILRRYGEERFARRIAAGIVRRRAKTPFT 180 Query: 187 TTQDLSSLIQKTVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 +T +L +L+ + + + R+ HPA R+FQALRI VN+E+E L + +A AL GG Sbjct: 181 STAELVALLYQAIP-APARRVGGHPAKRTFQALRIAVNDELESLRTAVPAALDALAIGGR 239 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 + V+++ SLEDR+VK+ FA + H F+S+T + ++ N Sbjct: 240 IAVLAYQSLEDRIVKRVFAEAVASATPAGLPVELPGHEPRFRSLTHGAERASVAEIERNP 299 Query: 305 RSRSAKLRAGMRTVERS 321 RS +LRA R R+ Sbjct: 300 RSTPVRLRALQRVEHRA 316 >gi|194323503|ref|ZP_03057280.1| S-adenosyl-methyltransferase MraW [Francisella tularensis subsp. novicida FTE] gi|208778997|ref|ZP_03246343.1| S-adenosyl-methyltransferase MraW [Francisella novicida FTG] gi|194322358|gb|EDX19839.1| S-adenosyl-methyltransferase MraW [Francisella tularensis subsp. novicida FTE] gi|208744797|gb|EDZ91095.1| S-adenosyl-methyltransferase MraW [Francisella novicida FTG] Length = 299 Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 117/302 (38%), Positives = 178/302 (58%), Gaps = 22/302 (7%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQETMRDYK 82 +++ I LN P + +DATFG GG+S++ +IA D+D A+S +E Sbjct: 1 MQESINDLNINPQGIYIDATFGRGGHSKAILNRLTTGRLIAFDKDLDAISYARENF---- 56 Query: 83 EQFSLFQ---ATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 QFS F+ A+F+ + DY +DG++ DLGVSS Q+D RGFSF +GPLDM Sbjct: 57 -QFSNFEIVHASFASIYDYCLQHSLLGKIDGIIMDLGVSSPQLDNAARGFSFTHNGPLDM 115 Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTTQDLSS 193 RM S GI+AS + + +V DL+ I + GEE+ A +IA I +Q+ TT +L+ Sbjct: 116 RMDVSKGITASQALEELSVDDLSYIFKVYGEERFARKIALRIKDYIQQNGSISTTLELAE 175 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 LI+ T+ K + +PATR FQALRI+VNNE+++L L + +K+GG + +SFHSL Sbjct: 176 LIRATI--GKKEKKNPATRCFQALRIYVNNELKDLEALLENILAVIKSGGRIAAISFHSL 233 Query: 254 EDRLVKKFFASR---SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 EDR+VK+ F++ ++ + M+P ++ + ITKK ++++ N RSRSA Sbjct: 234 EDRIVKQKFSALINPKQELNRITKMLPQDSSQIKLKWITKK-SKANEDELNQNVRSRSAI 292 Query: 311 LR 312 LR Sbjct: 293 LR 294 >gi|227512227|ref|ZP_03942276.1| S-adenosyl-methyltransferase [Lactobacillus buchneri ATCC 11577] gi|227084621|gb|EEI19933.1| S-adenosyl-methyltransferase [Lactobacillus buchneri ATCC 11577] Length = 315 Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 112/309 (36%), Positives = 174/309 (56%), Gaps = 12/309 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77 HV VLL + + L+ P +DAT G GG++ K ++ + D+D A+S Q+ Sbjct: 6 HVTVLLHEAVDGLDVDPNGTYVDATLGGGGHTTEILKRIDKGHLYSFDQDEEAISYNQQH 65 Query: 78 MRDYKE--QFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +R Y E + SL F ++ + D+G+ DG+V+DLGVSS Q D RGFS++ Sbjct: 66 LRQYVENDKLSLIHDNFRNIKVALADQGISKIDGIVYDLGVSSPQFDEAGRGFSYRFEAR 125 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + A V+N+ + L RI GEEK + +IA I + R+ P TT DL Sbjct: 126 LDMRMDQDNPVDAWKVINEWPYEKLVRIFYRYGEEKFSKQIARRIERTREDHPINTTTDL 185 Query: 192 SSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +LI++ + ++ + HPA + FQA+RI VN+E+ L L + + L GG + V++F Sbjct: 186 VTLIKEAIPAAARRHGGHPAKKVFQAVRIAVNDELSALEDSLEQSLELLAVGGRISVITF 245 Query: 251 HSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SLEDRLVK F ++ ++ +IP P ++ IT+K ++P ++++A N R+ S Sbjct: 246 QSLEDRLVKTMFKEKASLPELPPNLPVIPKELQPK-YKLITRKPIIPNEDELADNHRAHS 304 Query: 309 AKLRAGMRT 317 AKLR RT Sbjct: 305 AKLRIIERT 313 >gi|54114491|gb|AAV29879.1| NT02FT1003 [synthetic construct] Length = 305 Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 119/307 (38%), Positives = 178/307 (57%), Gaps = 22/307 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77 H VLL + I LN P + + ATFG GG+S++ +IA D+D A+S +E Sbjct: 2 HYSVLLPESINDLNINPQGIYIHATFGRGGHSKAILNRLTTGRLIAFDKDLDAISYAREN 61 Query: 78 MRDYKEQFSLFQ---ATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 QFS F+ A+F+ + DY +DG++ DLGVSS Q+D RGFSF + Sbjct: 62 F-----QFSNFEIVHASFASIYDYCLQHSLLGKIDGIIMDLGVSSPQLDNAARGFSFTHN 116 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTT 188 GPLDMRM S GI+AS + + +V DL+ I + GEE+ A +IA I +Q+ + T Sbjct: 117 GPLDMRMDVSKGITASQALEELSVDDLSYIFKVYGEERFAKKIALRIKDYIQQNGSIRKT 176 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ LI T+ K + +PATR FQALRI+VNNE+++L L + +K+GG + + Sbjct: 177 LELAELILATI--GKKEKKNPATRCFQALRIYVNNELKDLEALLENILAVIKSGGRIAAI 234 Query: 249 SFHSLEDRLVKKFFASR---SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 SFHSLEDR+VK+ F++ ++ + M+P ++ + ITKK ++++ N R Sbjct: 235 SFHSLEDRIVKQKFSALINPKQELNRITKMLPQDSSQIKLKWITKKSKA-NEDELNQNVR 293 Query: 306 SRSAKLR 312 SRSA LR Sbjct: 294 SRSAILR 300 >gi|240126238|ref|ZP_04739124.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae SK-92-679] gi|254494330|ref|ZP_05107501.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae 1291] gi|268595426|ref|ZP_06129593.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae 35/02] gi|268597236|ref|ZP_06131403.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae FA19] gi|268599411|ref|ZP_06133578.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae MS11] gi|268682771|ref|ZP_06149633.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae PID332] gi|268684819|ref|ZP_06151681.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae SK-92-679] gi|291043143|ref|ZP_06568866.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae DGI2] gi|262831552|sp|B4RQD7|RSMH_NEIG2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|226513370|gb|EEH62715.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae 1291] gi|268548815|gb|EEZ44233.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae 35/02] gi|268551024|gb|EEZ46043.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae FA19] gi|268583542|gb|EEZ48218.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae MS11] gi|268623055|gb|EEZ55455.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae PID332] gi|268625103|gb|EEZ57503.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae SK-92-679] gi|291012749|gb|EFE04732.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae DGI2] Length = 318 Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 117/311 (37%), Positives = 174/311 (55%), Gaps = 20/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMG--SNVIALDRDPFAVSCGQE 76 H+ VLL + + L V +D TFG GG+SR ++G +I D+DP A++ +E Sbjct: 9 HITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFDKDPQAIAVAEE 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 R K + + F+ Q + G VDG +FDLG+SS QID G RGFSF+ PL Sbjct: 69 LARSDK-RVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGSRGFSFRFDAPL 127 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + G+SA++ + A+ +DL ++ GEE+ + +I AIV +R +P TT+ L+ Sbjct: 128 DMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIVRAIVAQRAESPIDTTRKLA 187 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++ + V + + PATR+FQA+RIF+N E+EE+ L LK GG L V++FHS Sbjct: 188 QIVAQNVRTRERGQ-DPATRTFQAIRIFINRELEEVGAVLPQVMCRLKEGGRLAVIAFHS 246 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAH------PAVFQSITKKVVVPTQEDVAFNRRS 306 LEDR+VK+F K + +PS A P I + + P + ++A N R+ Sbjct: 247 LEDRIVKQFV-----KKYSQHEPLPSWAAVREADLPEPPLKIVGRALKPGEAEIAANPRA 301 Query: 307 RSAKLRAGMRT 317 RSA LR RT Sbjct: 302 RSAVLRVAERT 312 >gi|254246426|ref|ZP_04939747.1| S-adenosyl-methyltransferase [Burkholderia cenocepacia PC184] gi|124871202|gb|EAY62918.1| S-adenosyl-methyltransferase [Burkholderia cenocepacia PC184] Length = 319 Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 121/311 (38%), Positives = 185/311 (59%), Gaps = 21/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGS--NVIALDRDPFAVSCGQE 76 H VLL++ + L P V +D TFG GG+SR+ ++ S +IA D+DP A+ Q Sbjct: 13 HRTVLLDEAVESLVTRPDGVYVDGTFGRGGHSRAVLARLASAGRLIAFDKDPRAIETAQ- 71 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + D + FS+ +F+ ++D + +GV+ GV+ DLGVSS Q+D RGFSF+ GPL Sbjct: 72 GIEDAR--FSIVHDSFASMRDALAARGVEKVSGVLLDLGVSSPQVDDPARGFSFRADGPL 129 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTT 188 DMRM + G SA++ + +A+V++LT ++ GEE+ A +IA A+V RR + P TT Sbjct: 130 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDTT 189 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ ++ V + + PATR+FQA+RI VN E+ +L L +A L+ GG L+V+ Sbjct: 190 GELAQIVGHVVKTREKGK-DPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVI 248 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNRR 305 SFHSLEDR+VK+F + + AV +P A S K++ P++ +VA N R Sbjct: 249 SFHSLEDRIVKRFMQAHA-SAPAVDRRLPIRA--VDLPSPPLKIISRQFPSEAEVAANPR 305 Query: 306 SRSAKLRAGMR 316 +RSA +R R Sbjct: 306 ARSAVMRIAER 316 >gi|28493187|ref|NP_787348.1| S-adenosyl-methyltransferase MraW [Tropheryma whipplei str. Twist] gi|28572698|ref|NP_789478.1| S-adenosyl-methyltransferase [Tropheryma whipplei TW08/27] gi|42559466|sp|Q83GN7|RSMH_TROWT RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|42559467|sp|Q83HJ6|RSMH_TROW8 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|28410830|emb|CAD67216.1| S-adenosyl-methyltransferase [Tropheryma whipplei TW08/27] gi|28476228|gb|AAO44317.1| unknown [Tropheryma whipplei str. Twist] Length = 317 Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 118/303 (38%), Positives = 171/303 (56%), Gaps = 9/303 (2%) Query: 20 HVPVLLEKVIALLNP--APGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVSCGQ 75 H+PV+L +V L+ P G V +DAT GAGG+S + G+ + +DRD +A++ + Sbjct: 4 HLPVMLGEVCQLIEPVLGIGDVFIDATLGAGGHSEAILMSSQGALLYGIDRDAYALALAR 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + + + ++ TF + Y+ + +FDLG+SSMQID DRGFS+ KSGPLDM Sbjct: 64 KRLSGFADRCKFVHDTFDKFDKYLSNLHPKVFLFDLGMSSMQIDNPDRGFSYMKSGPLDM 123 Query: 136 RMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM+ S I+A +++N + L RI G+E+ A RIA I K R + TT +S L Sbjct: 124 RMNESDKITAKEILNGYSETALIRIFRDYGQERYAKRIARQICKARSVSELVTTCQVSQL 183 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 I + V + HPA R FQALRI VN+E+ L L A L+ GG ++V+S+HSLE Sbjct: 184 I-RDVCPPHIRKGHPAKRVFQALRIEVNSELLFLRTALEKALDLLQVGGRIVVLSYHSLE 242 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 DR+VK F RS V + N P ++ I K + P + ++A N R+ SA LRA Sbjct: 243 DRIVKHLF--RSVSVSQLPKGFYINKDPE-YKLIGKDLKNPKETEIANNPRASSAHLRAV 299 Query: 315 MRT 317 R Sbjct: 300 ERV 302 >gi|313888490|ref|ZP_07822157.1| S-adenosyl-methyltransferase MraW [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845519|gb|EFR32913.1| S-adenosyl-methyltransferase MraW [Peptoniphilus harei ACS-146-V-Sch2b] Length = 312 Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 116/306 (37%), Positives = 173/306 (56%), Gaps = 18/306 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNV-IALDRDPFAVSCGQE 76 H VLL++ I LN GK+ LD T G G+SR K G+ + I +D+D A+ +E Sbjct: 5 HKSVLLDETIEGLNIREGKIYLDGTLGGAGHSREILKKLKGTGLLIGIDQDIEALEVAKE 64 Query: 77 TMRDYK--EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + +YK E F+L F + D + +DGV+ D+GVSS Q D +RGFS++ PLD Sbjct: 65 RLSNYKNVEFFNLNYINFEKALDELGIDKIDGVLLDIGVSSYQFDNPERGFSYRFDAPLD 124 Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM ISA D+VN + ++TRI+ GEEK A+RIA IV R++ +TT +L Sbjct: 125 MRMDQELEISARDIVNTYSESEITRIIKEYGEEKWAARIAKFIVDERKTKNIETTFELVE 184 Query: 194 LIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ + S + N HPA R+FQALRI VN E++ L + L GG + +++FHS Sbjct: 185 IIKNAIPASARRNGPHPAKRTFQALRIEVNRELDVLEDSIERFVHRLNPGGRIAIITFHS 244 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNA------HPAVFQSITKKVVVPTQEDVAFNRRS 306 LEDR+VK F K + + P ++ + +T+K + ++E++ N+RS Sbjct: 245 LEDRIVKNAF-----KYLEKDCICPPSSPICTCDKKKEIKILTRKPITASEEELKENKRS 299 Query: 307 RSAKLR 312 SAKLR Sbjct: 300 HSAKLR 305 >gi|259503028|ref|ZP_05745930.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Lactobacillus antri DSM 16041] gi|259168894|gb|EEW53389.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Lactobacillus antri DSM 16041] Length = 317 Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 115/306 (37%), Positives = 177/306 (57%), Gaps = 13/306 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76 +HV VLL++ +A LN P +D T G GG++ + ++ + D+D A+ ++ Sbjct: 7 NHVTVLLKEAVAGLNIRPTGTYVDGTLGGGGHTSAILGQLTTGHLYSFDQDETAIDYNRD 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + D + +L + F LQ + GV DGV++DLGVSS Q D RGFS++ Sbjct: 67 QLNDAIAAGKLTLVEDNFRHLQQALAAHGVRRVDGVLYDLGVSSPQFDDAQRGFSYKLDA 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ +SA +VVN+ + L RIL GEE+ A +IA I +RRQ P +TT + Sbjct: 127 PLDMRMNQDQSLSAMEVVNEWPYERLVRILYRYGEERFAKQIARKIEQRRQREPIRTTFE 186 Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I++ + ++ + HPA +SFQA+RI VN+E+ L + L A L GG + V++ Sbjct: 187 LVDVIKEAIPAAARRHGGHPAKKSFQAVRIAVNDELGALEESLEQALAMLTVGGRISVIT 246 Query: 250 FHSLEDRLVKKFF---ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 F SLEDRLVK F +S S + +IP+ P F+ I +K ++P+ +++A N R+ Sbjct: 247 FQSLEDRLVKTLFREKSSLSADLPQGLPVIPAGMSPD-FKLINRKPILPSAQELAANHRA 305 Query: 307 RSAKLR 312 SAKLR Sbjct: 306 HSAKLR 311 >gi|325977602|ref|YP_004287318.1| S-adenosyl-methyltransferase MraW [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325177530|emb|CBZ47574.1| S-adenosyl-methyltransferase MraW [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 324 Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 117/323 (36%), Positives = 181/323 (56%), Gaps = 19/323 (5%) Query: 6 CKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMG--SNVI 62 K M++ HH + VLL + + +L+ P V +DAT G G+S K+G ++ Sbjct: 6 MKGMTTDFHH-----ITVLLHETVDMLDIKPDGVYVDATLGGAGHSEYLLSKLGPTGHLY 60 Query: 63 ALDRDPFAVSCGQETMRDYKE--QFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQ 117 A D+D A+ Q ++DY E Q + + F L + GV DG+++DLGVSS Q Sbjct: 61 AFDQDQTAIDNAQIRLKDYIEKGQVTFIKDNFRNLASNLASHGVTEIDGILYDLGVSSPQ 120 Query: 118 IDCGDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 +D +RGFS++K PLDMRM+ +SA DVVN + DL RI GE+K + +IA I Sbjct: 121 LDERERGFSYKKDAPLDMRMNRDQDLSAYDVVNTYDYHDLVRIFFKYGEDKFSKQIARKI 180 Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRS 234 + R+ P +TT +L+ +I K+ +K + HPA + FQA+RI VN+E+ + ++ Sbjct: 181 EQARKVKPIETTTELAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQ 239 Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVV 293 A + L G + V++FHSLEDRL K+ F S V IP + P + + +K + Sbjct: 240 AIELLAVDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPEDMQPKL-ALVNRKPI 298 Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316 +P++E++ N RS SAKLR + Sbjct: 299 LPSEEELEVNNRSHSAKLRVARK 321 >gi|283379446|dbj|BAI66129.1| S-adenosyl-methyltransferase [Neisseria gonorrhoeae] gi|283379452|dbj|BAI66134.1| S-adenosyl-methyltransferase [Neisseria gonorrhoeae] Length = 314 Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 117/311 (37%), Positives = 174/311 (55%), Gaps = 20/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMG--SNVIALDRDPFAVSCGQE 76 H+ VLL + + L V +D TFG GG+SR ++G +I D+DP A++ +E Sbjct: 5 HITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFDKDPQAIAVAEE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 R K + + F+ Q + G VDG +FDLG+SS QID G RGFSF+ PL Sbjct: 65 LARSDK-RVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGSRGFSFRFDAPL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + G+SA++ + A+ +DL ++ GEE+ + +I AIV +R +P TT+ L+ Sbjct: 124 DMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIVRAIVAQRAESPIDTTRKLA 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++ + V + + PATR+FQA+RIF+N E+EE+ L LK GG L V++FHS Sbjct: 184 QIVAQNVRTRERGQ-DPATRTFQAIRIFINRELEEVGAVLPQVMCRLKEGGRLAVIAFHS 242 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAH------PAVFQSITKKVVVPTQEDVAFNRRS 306 LEDR+VK+F K + +PS A P I + + P + ++A N R+ Sbjct: 243 LEDRIVKQFV-----KKYSQHEPLPSWAAVREADLPEPPLKIVGRALKPGEAEIAANPRA 297 Query: 307 RSAKLRAGMRT 317 RSA LR RT Sbjct: 298 RSAVLRVAERT 308 >gi|58696920|ref|ZP_00372421.1| S-adenosyl-methyltransferase MraW [Wolbachia endosymbiont of Drosophila simulans] gi|58536850|gb|EAL60058.1| S-adenosyl-methyltransferase MraW [Wolbachia endosymbiont of Drosophila simulans] Length = 251 Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 106/260 (40%), Positives = 159/260 (61%), Gaps = 17/260 (6%) Query: 61 VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQ 117 V A+DRD + Y ++ LF FS +++ + +G+DG+VFD+GVSSMQ Sbjct: 3 VYAIDRDETVTKFYDDLSVRYPDRIKLFIEKFSNIKNLLDSNNIEGIDGIVFDIGVSSMQ 62 Query: 118 IDCGDRGFSFQKSGPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 +D GDRGFSF GPLDM M + S I+AS VN +++ + G E+ + +IA AI Sbjct: 63 LDNGDRGFSFLHDGPLDMSMDNSSYINASTFVNALREEEIANTIYNYGGERHSRKIARAI 122 Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236 V R+ +TT +L+ ++ ++V F ++I PATR+FQA+RI+VN+E+ EL +G+++A Sbjct: 123 VNARKKKTIKTTFELADIV-RSVVFRGKSKIDPATRTFQAIRIWVNDELGELEKGIKAAS 181 Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296 + L G LIVV+FHSLEDR+VK FF + + ++ F + KKV+ + Sbjct: 182 EILSENGKLIVVTFHSLEDRIVKTFF----------KDLCATDCK--TFSLLNKKVIEAS 229 Query: 297 QEDVAFNRRSRSAKLRAGMR 316 E+V+ N RSRSAKLRA R Sbjct: 230 IEEVSANPRSRSAKLRAIQR 249 >gi|52841149|ref|YP_094948.1| S-adenosyl-methyltransferase MraW [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628260|gb|AAU27001.1| S-adenosylmethyl transferase MraW [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 334 Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 119/312 (38%), Positives = 173/312 (55%), Gaps = 18/312 (5%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSC 73 + H VLL + I L + D TFG GG+SR S+ + A+D+D AV Sbjct: 27 MAKHQSVLLHESIKGLAIKADGIYFDGTFGRGGHSREILNHLSDKGRLFAIDKDLDAV-- 84 Query: 74 GQETMRDY---KEQFSLFQATFSQLQDYVPDKGV----DGVVFDLGVSSMQIDCGDRGFS 126 + +DY ++F +F +F+Q++++ GV DG++ DLGVSS Q+D +RGFS Sbjct: 85 --QYAKDYFGLDKRFQIFHGSFAQIKEFASQAGVIGAVDGILLDLGVSSPQLDNPERGFS 142 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 F GPLDMRM + I+A++ VN+A V +L + GEE+ A RIA AIV R+ P Sbjct: 143 FMLQGPLDMRMDLTQSINAANFVNEAEVNELAHVFRAYGEERFAGRIAKAIVDARKLKPI 202 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT +L+ ++++ + ++ HPATR FQA+RI VN E+ +L+ L L GG L Sbjct: 203 TTTLELAEIVKEANPKWEKHK-HPATRVFQAIRIHVNQELTDLSNCLEQCLDVLGPGGRL 261 Query: 246 IVVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 V+SFHSLEDR+VK+F + G V I F+ + K V P ++ N Sbjct: 262 AVISFHSLEDRIVKQFMRDKEQGNRPPVEVPIKYEELKTNFKKVG-KAVKPQSSEIKENV 320 Query: 305 RSRSAKLRAGMR 316 RSRSA LR G + Sbjct: 321 RSRSAVLRIGEK 332 >gi|168186149|ref|ZP_02620784.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum C str. Eklund] gi|169295776|gb|EDS77909.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum C str. Eklund] Length = 309 Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 113/306 (36%), Positives = 164/306 (53%), Gaps = 9/306 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 +HVPVLLE+ I LN + +D T G G+S K S +I +D+D A+ + Sbjct: 4 NHVPVLLEETIDSLNIKKDGIYVDCTLGGAGHSSEILKKLSKKGRLIGIDQDINAIKAAK 63 Query: 76 ETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 ++ Y E + F L D + + VDG++ DLGVSS Q+D +RGFS+ Sbjct: 64 NRLKGY-ENITYVHNNFYNLAGILDELNVEKVDGILMDLGVSSYQLDTPERGFSYMNDAM 122 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ SGISA DVVN + DL RI+ GEE+ A +IA AIVK R P +TT L Sbjct: 123 LDMRMNTESGISAYDVVNGYSEDDLFRIIKNYGEERFARKIARAIVKERNEKPIETTLQL 182 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + HPA ++FQA+RI VN+E+E L + + L G + V++FH Sbjct: 183 VKIIRNVIPMKFQQGGHPAKKTFQAIRIEVNHELEILNKTVEDGVNYLNKDGRISVITFH 242 Query: 252 SLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR++K F + I + + IT+K + P++ + N RSRS+K Sbjct: 243 SLEDRIIKTKFKELENPCTCPKEFPICVCGKKPIVKVITRKPIEPSEVERENNSRSRSSK 302 Query: 311 LRAGMR 316 LR + Sbjct: 303 LRVAQK 308 >gi|311741520|ref|ZP_07715344.1| S-adenosyl-methyltransferase MraW [Corynebacterium pseudogenitalium ATCC 33035] gi|311303690|gb|EFQ79769.1| S-adenosyl-methyltransferase MraW [Corynebacterium pseudogenitalium ATCC 33035] Length = 346 Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 119/316 (37%), Positives = 177/316 (56%), Gaps = 24/316 (7%) Query: 20 HVPVLLEKVIALLNP---APGK--VILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVS 72 HVPV+ E++ LL P A G V++DAT GAGG++R F + + VI +DRD A+ Sbjct: 16 HVPVMRERMADLLRPQVEAAGDKAVLVDATLGAGGHTRYFLESFPEARVIGVDRDKQALR 75 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDK-----------GVDGVVFDLGVSSMQIDCG 121 E + Y ++F A F +L + + G+ G +FDLGVSSMQ+D Sbjct: 76 NATERLAPYGDRFVGVNARFDELGSAIAEGEGDIFDSARSVGIAGALFDLGVSSMQLDQA 135 Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 DRGF+++ PLDMRM S GI+A+DV+N + DL R+L G+E+ A +IA A++K R Sbjct: 136 DRGFAYKADAPLDMRMDPSQGITAADVLNTYSHGDLARVLKTYGDERFAGKIASAVLKER 195 Query: 181 QSAPFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 PF + L L+ + ++ HPA R+FQALR+ VN E+E + L +AL Sbjct: 196 DKEPFVNSARLVELLYDVIPAATRRTGGHPAKRTFQALRVEVNRELEAIENVLPVITQAL 255 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFAS-RSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQ 297 GG + +S+ SLEDR+VK F + K A M +P A F+ +T+ ++ Sbjct: 256 SEGGRAVFMSYQSLEDRIVKAAFKELTTSKTPAGLPMDLPGTAPK--FKIVTRGAEKASE 313 Query: 298 EDVAFNRRSRSAKLRA 313 E+VA N R+ S ++RA Sbjct: 314 EEVAENSRAASVRVRA 329 >gi|328952338|ref|YP_004369672.1| Ribosomal RNA small subunit methyltransferase H [Desulfobacca acetoxidans DSM 11109] gi|328452662|gb|AEB08491.1| Ribosomal RNA small subunit methyltransferase H [Desulfobacca acetoxidans DSM 11109] Length = 303 Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 113/308 (36%), Positives = 172/308 (55%), Gaps = 31/308 (10%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRD 80 ++++V+A L PG + +D T G GG++ + S V+ LD+D A+ + Sbjct: 1 MVQEVLAELQCQPGHIYVDGTVGLGGHAEAILLRSSPTGQVVGLDQDSAALQIAALRLLP 60 Query: 81 YKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 Y + L + ++QL + + + VDG++ DLG+S+ Q+ RGFSF+ PLDMRM Sbjct: 61 YGPRVYLIHSCYTQLAEILQQRRIESVDGILLDLGISTEQLKSSGRGFSFKGKEPLDMRM 120 Query: 138 S--CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 + +A+D++N L+R+ LGEE+ A RIA IV+ RQ AP TT L +I Sbjct: 121 NPDVQTTTAADLLNTEPEAQLSRMFWELGEERWARRIARNIVRARQQAPLITTNQLVEVI 180 Query: 196 QKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 +++ RIHPATR FQALRI VN E+E+++ + A K L GG L+++ +HSLE Sbjct: 181 LRSLPPKTGMKRIHPATRVFQALRIAVNQELEKISAFIPQAIKVLAPGGRLVIIDYHSLE 240 Query: 255 DRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 DR+VK+ F A R+G V + KK ++P + +VA N +RSAK Sbjct: 241 DRIVKRAFIEAERAGSV----------------RRRYKKPLIPGEAEVASNPSARSAK-- 282 Query: 313 AGMRTVER 320 MRTVE+ Sbjct: 283 --MRTVEK 288 >gi|225351427|ref|ZP_03742450.1| hypothetical protein BIFPSEUDO_03022 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157771|gb|EEG71054.1| hypothetical protein BIFPSEUDO_03022 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 343 Score = 183 bits (464), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 114/306 (37%), Positives = 168/306 (54%), Gaps = 13/306 (4%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74 H PVLL + L+ PA PG + +D T G G+S +F K + +I +DRD A+S Sbjct: 8 HQPVLLRDCVDLVVPALARPGSIAVDCTLGLAGHSTAFLKASPQARLIGIDRDTEALSLA 67 Query: 75 QETMR--DYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQK 129 + MR ++F A F + D+G+D V DLG+SS+QID +RGFS+ Sbjct: 68 TQRMRMEGLADRFIPVHAAFDDFAQVLDDQGIDQVNAVFMDLGLSSLQIDETERGFSYSH 127 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM + ++A ++ + + DL RI GEE+ + +IA IV+RR+ P T+ Sbjct: 128 DAPLDMRMDVTQPLTAEQILAEYSFADLVRIFRTYGEERFSKQIAREIVRRREIEPLTTS 187 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ L+ + V + +PA R FQALRI VN E+++LA L L GG L+V Sbjct: 188 GQLNRLVDEVVPQAHRPAGNPAKRVFQALRIEVNGELDKLAGTLPQIANHLAVGGRLVVE 247 Query: 249 SFHSLEDRLVKKFF-ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 S+HSLED+ VK F V A +IP + P F+ +T+ + +E++A N RS Sbjct: 248 SYHSLEDKTVKTFMNQGLKADVPADMPVIPPDMMP-FFKELTRGAIKAAEEEIAMNPRSA 306 Query: 308 SAKLRA 313 S +LRA Sbjct: 307 SVRLRA 312 >gi|225021917|ref|ZP_03711109.1| hypothetical protein CORMATOL_01949 [Corynebacterium matruchotii ATCC 33806] gi|224945304|gb|EEG26513.1| hypothetical protein CORMATOL_01949 [Corynebacterium matruchotii ATCC 33806] Length = 341 Score = 183 bits (464), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 115/322 (35%), Positives = 179/322 (55%), Gaps = 32/322 (9%) Query: 20 HVPVLLEKVIALLNPA------PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAV 71 HVPVL E+V LL PA +ILDAT GAGG+S F N+I LDRD A+ Sbjct: 9 HVPVLRERVTELLAPALCNTTTNPPIILDATLGAGGHSEYFLTTFPQVNIIGLDRDTTAL 68 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVP--------------DKGVDGVVFDLGVSSMQ 117 + + ++ ++ + F + +G+ G +FDLGVSSMQ Sbjct: 69 AQAATRLANFGDRITTLHTRFDDFPTAIQAAADAGNATCQAALTEGISGALFDLGVSSMQ 128 Query: 118 IDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 +D +RGF+++ PLDMRM+ S GI+A++++N +LTRIL G+E+ AS+IA AI Sbjct: 129 LDQVNRGFAYRVDAPLDMRMNNSEGITAAEILNTYPHGNLTRILKTYGDERFASKIATAI 188 Query: 177 VKRRQSAPFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 ++ R+ APF T+ L L+ T+ ++ HPA R+FQALRI VN E+ + L Sbjct: 189 IREREHAPFTTSARLVELLYNTIPAATRRTGGHPAKRTFQALRIEVNQELAAITNVLPRI 248 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFA----SRSGKVMAVRHMIPSNAHPAVFQSITKK 291 AL GG + +++ SLED+++KK+FA S++ + + + +P A A F+ +T+ Sbjct: 249 ADALIPGGRAVFMAYQSLEDKIIKKYFAEITTSKTPRGLPIE--LPEYA--AKFRLVTRG 304 Query: 292 VVVPTQEDVAFNRRSRSAKLRA 313 T ++A N R+ ++RA Sbjct: 305 AEKATPAEIADNSRAAPVRVRA 326 >gi|209524297|ref|ZP_03272847.1| S-adenosyl-methyltransferase MraW [Arthrospira maxima CS-328] gi|209495388|gb|EDZ95693.1| S-adenosyl-methyltransferase MraW [Arthrospira maxima CS-328] Length = 324 Score = 183 bits (464), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 121/306 (39%), Positives = 171/306 (55%), Gaps = 30/306 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQ-- 75 H+PVL ++I L G LDAT G GG++R + NV A+DRD A++ + Sbjct: 19 HIPVLGRELIEGLAVQEGGHYLDATVGGGGHTRMIFQAAPNVRVTAIDRDLEAIAAAKSM 78 Query: 76 --ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +T+ + + + FSQ P + DG++ DLGV+S Q+D RGFSF+ GPL Sbjct: 79 LMDTIGNCGARLKFWHGNFSQYPS-SPSQ-FDGIIADLGVNSHQLDTPGRGFSFRHCGPL 136 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +SA++++N + K L I GEE+ + RIA IV++R PFQTT+ L+ Sbjct: 137 DMRMNPQDPLSAAEIINTWDEKQLADIFYTYGEERLSRRIARQIVEKR---PFQTTEHLA 193 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + I V + RIHPATR FQALRI VN E+ L L +A LK G + ++SFH Sbjct: 194 NAIANCVPSKYRYGRIHPATRVFQALRIAVNGELTALETFLETAPTWLKPRGRIGIISFH 253 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR VK F RH HP + + +TKK + P +++ N R+RSAKL Sbjct: 254 SLEDRPVKHGF----------RH------HP-LLKVLTKKPITPQPDEINQNPRARSAKL 296 Query: 312 RAGMRT 317 R R+ Sbjct: 297 RLAERS 302 >gi|206561807|ref|YP_002232572.1| S-adenosyl-methyltransferase MraW [Burkholderia cenocepacia J2315] gi|263447024|sp|B4E6K0|RSMH_BURCJ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|198037849|emb|CAR53793.1| S-adenosyl-methyltransferase MraW [Burkholderia cenocepacia J2315] Length = 313 Score = 183 bits (464), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 120/311 (38%), Positives = 184/311 (59%), Gaps = 21/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VLL++ + L P V +D TFG GG+SR+ + +IA D+DP A+ Q Sbjct: 7 HRTVLLDEAVESLVTRPDGVYVDGTFGRGGHSRAVLARLAPAARLIAFDKDPRAIETAQ- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++D + FS+ +F+ ++D + +GV+ GV+ DLGVSS Q+D RGFSF+ GPL Sbjct: 66 GIKDAR--FSIVHDSFASMRDALAARGVEKVSGVLLDLGVSSPQVDDPARGFSFRADGPL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTT 188 DMRM + G SA++ + +A+V++LT ++ GEE+ A +IA A+V RR + P TT Sbjct: 124 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDTT 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ ++ V + + PATR+FQA+RI VN E+ +L L +A L+ GG L+V+ Sbjct: 184 GELAQIVGHVVKTREKGK-DPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVI 242 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNRR 305 SFHSLEDR+VK+F + + AV +P A S K++ P++ +VA N R Sbjct: 243 SFHSLEDRIVKRFMQAHA-SAPAVDRRLPIRA--VDLPSPPLKIISRQFPSEAEVAANPR 299 Query: 306 SRSAKLRAGMR 316 +RSA +R R Sbjct: 300 ARSAVMRIAER 310 >gi|296134857|ref|YP_003642099.1| S-adenosyl-methyltransferase MraW [Thiomonas intermedia K12] gi|295794979|gb|ADG29769.1| S-adenosyl-methyltransferase MraW [Thiomonas intermedia K12] Length = 311 Score = 183 bits (464), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 122/310 (39%), Positives = 179/310 (57%), Gaps = 18/310 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H VLL + + L P V LDATFG GG+SR + S +IA+DRDP A+ + Sbjct: 8 HRTVLLHEAVDQLITNPDGVYLDATFGRGGHSREILRRLSPAGRLIAIDRDPQAIEAAAQ 67 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + +F + A FS+ + ++GV DG++FDLGVSS Q+D +RGFSF+ GPL Sbjct: 68 I---HDARFVIKHAPFSEFARVLHEQGVAQADGLLFDLGVSSPQLDQPERGFSFRADGPL 124 Query: 134 DMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQTTQDL 191 DMRM + SG + ++ + A+V ++ +L G+E+ A +IA IV RR + AP + +L Sbjct: 125 DMRMDNSSGQTVAEYLATASVDEIATVLRDYGDERAAVQIAKKIVARRDAGAPLARSGEL 184 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++L+ V S+ PATR+FQALRI VN E+ ++ L L+ GG L V+SFH Sbjct: 185 AALVASAVK-SREPGQDPATRTFQALRIHVNAELAQIETALSQVLDCLRPGGRLAVISFH 243 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVV--VPTQEDVAFNRRSR 307 SLED L+K+F +R+ V + +P + A FQ K+VV P+ +++ N RSR Sbjct: 244 SLEDALIKRFIHRHARAPAVDRRQPFVPGVS--AEFQPQLKEVVRMRPSAAEISGNARSR 301 Query: 308 SAKLRAGMRT 317 SA LR R Sbjct: 302 SAMLRVAQRV 311 >gi|294338811|emb|CAZ87145.1| S-adenosyl-dependent methyl transferase MraW [Thiomonas sp. 3As] Length = 317 Score = 183 bits (464), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 123/310 (39%), Positives = 179/310 (57%), Gaps = 20/310 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H VLL + + L P V LDATFG GG+SR + S +IA+DRDP A+ + Sbjct: 14 HRTVLLHEAVDQLITNPDGVYLDATFGRGGHSREILRRLSPAGRLIAIDRDPQAIEAAAQ 73 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + +F + A FS+ + ++GV DG++FDLGVSS Q+D +RGFSF+ GPL Sbjct: 74 I---HDARFVIKHAPFSEFARVLHEQGVAQADGLLFDLGVSSPQLDQPERGFSFRADGPL 130 Query: 134 DMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQTTQDL 191 DMRM + SG + ++ + A+V ++ +L G+E+ A +IA IV RR + AP + +L Sbjct: 131 DMRMDNSSGQTVAEYLATASVDEIATVLRDYGDERAAVQIAKKIVARRDAGAPLARSGEL 190 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++L+ V S+ PATR+FQALRI VN E+ ++ L L+ GG L V+SFH Sbjct: 191 AALVASAVK-SREPGQDPATRTFQALRIHVNAELAQIETALSQVLDCLRPGGRLAVISFH 249 Query: 252 SLEDRLVKKFFASRSGKVMAV---RHMIPSNAHPAVFQSITKKVV--VPTQEDVAFNRRS 306 SLED L+K+F R + AV + +P + A FQ K+VV P+ +++ N RS Sbjct: 250 SLEDALIKRFI-HRHARAPAVDRRQPFVPGVS--AEFQPQLKEVVRMRPSAAEISGNARS 306 Query: 307 RSAKLRAGMR 316 RSA LR R Sbjct: 307 RSAMLRVAQR 316 >gi|325912968|ref|ZP_08175341.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners UPII 60-B] gi|325477648|gb|EGC80787.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners UPII 60-B] Length = 317 Score = 183 bits (464), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 119/312 (38%), Positives = 176/312 (56%), Gaps = 17/312 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H VLL + I LN V +DATFG GG++ K SN +I D+D +A+ +++ Sbjct: 7 HYSVLLHETIDNLNLKNDGVYVDATFGGGGHASYLLKQLSNGHLIGFDQDEYAIELAKKS 66 Query: 78 MRDY-----KEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + K + SL F LQ + G+DG+ +DLGVSS Q D +RGFS++ Sbjct: 67 FSEVLKANSKPKLSLVHDNFGNLQQNLAKLGFIDGIDGIYYDLGVSSPQFDQPERGFSYR 126 Query: 129 KSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + LDMRM + A +VN + K+L+ IL G+EK A +IA IV +R P T Sbjct: 127 FNARLDMRMDQTKDLDAYKIVNTWSQKELSNILFKYGDEKYARQIAKNIVAKRAIKPITT 186 Query: 188 TQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T +L +I++ + F++ HPA +SFQA+RI VN+E+E L + L A + LK GG + Sbjct: 187 TFELVDIIKEAIPAFARRTGGHPAKKSFQAIRIAVNDELEVLEKSLLEAIEILKPGGRIC 246 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 V++F SLED++VKK F S V R M IP + P + + I++K +V T +++ N Sbjct: 247 VITFQSLEDKIVKKIFKKYSD-VDIPRGMPQIPDSLKPTL-KIISRKPIVATNKELEENN 304 Query: 305 RSRSAKLRAGMR 316 RS SAKLR + Sbjct: 305 RSHSAKLRVAEK 316 >gi|220927929|ref|YP_002504838.1| S-adenosyl-methyltransferase MraW [Clostridium cellulolyticum H10] gi|263447445|sp|B8I6G6|RSMH_CLOCE RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|219998257|gb|ACL74858.1| S-adenosyl-methyltransferase MraW [Clostridium cellulolyticum H10] Length = 313 Score = 183 bits (464), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 121/314 (38%), Positives = 168/314 (53%), Gaps = 31/314 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76 H VLL++ I LN + +D T G G+S K +G ++ LD+D FAV + Sbjct: 5 HTSVLLDECIEYLNINQEGIYVDGTIGGAGHSSEIYKRLGEKGCLVGLDQDSFAVETSIK 64 Query: 77 TMRDYKEQ--FSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + K F + F ++ G VDG++ DLGVSS Q+D RGFS+Q Sbjct: 65 RLDEIKSNADFKVVNTNFKNIKSACSGLGINEVDGILLDLGVSSHQLDEASRGFSYQHDA 124 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ S +SA DVVN+ + +D+ RI+ GEEK ASRIA I + RQ+ P +TT D Sbjct: 125 PLDMRMNTKSELSAYDVVNKYSEQDIYRIIRDFGEEKWASRIAKFITEARQNEPVETTYD 184 Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I+K V S + + HPA R+FQA+RI VNNE+ L + + LK GG L +++ Sbjct: 185 LVDIIKKAVPSSARRDGPHPAKRTFQAIRIEVNNELGILNKTIEDCVDLLKRGGRLCIIT 244 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS-----------ITKKVVVPTQE 298 FHSLEDR+VK M M+ P F I KK +V Sbjct: 245 FHSLEDRIVK----------MQYNKMVNPCTCPPAFPVCACGKKPKAVLINKKPIVSDIR 294 Query: 299 DVAFNRRSRSAKLR 312 ++ N R+RSAKLR Sbjct: 295 ELDKNPRARSAKLR 308 >gi|77166320|ref|YP_344845.1| methyltransferase [Nitrosococcus oceani ATCC 19707] gi|254435207|ref|ZP_05048714.1| S-adenosyl-methyltransferase MraW [Nitrosococcus oceani AFC27] gi|88909205|sp|Q3J781|RSMH_NITOC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|76884634|gb|ABA59315.1| methyltransferase [Nitrosococcus oceani ATCC 19707] gi|207088318|gb|EDZ65590.1| S-adenosyl-methyltransferase MraW [Nitrosococcus oceani AFC27] Length = 315 Score = 183 bits (464), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 115/308 (37%), Positives = 182/308 (59%), Gaps = 11/308 (3%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFA 70 ++ I H PVLL + I L + +D TFG GG++++ S+ ++ +D+DP A Sbjct: 3 NNEISSHQPVLLREAIQALAIRRDGLYIDGTFGRGGHAQAILAALSSEGRLLGVDKDPAA 62 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFS 126 ++ G + +F++ QA+ L V ++G ++GV+FDLGVSS Q++ +RGFS Sbjct: 63 IAAGHALAQK-DGRFTIVQASIGDLARVVSERGWLKRINGVLFDLGVSSPQLESAERGFS 121 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 F + GPLDMRM+ + G SA++ + A K++ +L + GEE+ RIA AI++ R+ Sbjct: 122 FLRDGPLDMRMNPTVGQSAAEWLANAKEKEIAEVLRVYGEERYCRRIARAIIQARELNSL 181 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 T+ L+ ++ K + R+HPATRSFQA+RIF+N+E+EEL L A AL G L Sbjct: 182 TRTKQLAEVVAKAIP-RWERRMHPATRSFQAIRIFINHELEELRAALEQALAALAVKGRL 240 Query: 246 IVVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 V+SFHSLEDR+VK+FF ++ G+ + + + K + P E++A N Sbjct: 241 AVISFHSLEDRIVKRFFREKARGEELPPDLPVMQKDFQQASLKVLGKPIWPVPEEIAHNP 300 Query: 305 RSRSAKLR 312 R+RSA+LR Sbjct: 301 RARSARLR 308 >gi|109947477|ref|YP_664705.1| S-adenosyl-methyltransferase MraW [Helicobacter acinonychis str. Sheeba] gi|122973304|sp|Q17XC0|RSMH_HELAH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|109714698|emb|CAJ99706.1| S-adenosyl-methyltransferase [Helicobacter acinonychis str. Sheeba] Length = 308 Score = 183 bits (464), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 113/301 (37%), Positives = 173/301 (57%), Gaps = 14/301 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVSCGQET 77 H VLL++V+ P V +D T G GG+S++ K +I +D+D A +E Sbjct: 8 HKSVLLQEVLQAFAPLEKGVFIDCTLGLGGHSKALLSQKPHLKLIGIDKDKHAQEIAKER 67 Query: 78 MRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++ ++ + + F++ ++ + G + GV+ DLGVSS+Q+D +RGF+F S LD Sbjct: 68 LKAFEGCYHILSGGFAKRFKEALETHGEQIKGVLVDLGVSSLQLDDDNRGFNFH-SHALD 126 Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM S ++A V+N + L +I G K+ +IAH IV+RR PF+ +DLS Sbjct: 127 MRMDLESELNAQKVINSYCIVALEKIFKDYGAIKEYKKIAHHIVERRAKKPFKDAKDLSD 186 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 + SKN +IHPAT FQA+RI VN E+EEL + L+ A K G +L V+SFHSL Sbjct: 187 FLSS---LSKNKKIHPATLVFQAIRIEVNRELEELKEFLQDAMKL--KGAILCVISFHSL 241 Query: 254 EDRLVKKFFASRSGKVM--AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 ED LVK F + + + A+ + + A+ + +TKK + P+ E++ NRRSRSAK+ Sbjct: 242 EDALVKNAFKNYAKNCICDALNFKCTCSNNHALGEILTKKPITPSLEEIKHNRRSRSAKM 301 Query: 312 R 312 R Sbjct: 302 R 302 >gi|258404866|ref|YP_003197608.1| S-adenosyl-methyltransferase MraW [Desulfohalobium retbaense DSM 5692] gi|257797093|gb|ACV68030.1| S-adenosyl-methyltransferase MraW [Desulfohalobium retbaense DSM 5692] Length = 332 Score = 183 bits (464), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 124/309 (40%), Positives = 176/309 (56%), Gaps = 14/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77 H VLL +V+ L P PG LD T G GG++ + + S V+ LDRD A+ + Sbjct: 18 HQSVLLAEVLQALKPRPGGRYLDGTLGLGGHAEAILEHAPDSEVLGLDRDGAALDAAEAR 77 Query: 78 MRDYKEQFSLFQATFSQL---QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + + ++ + Q +FS+ D + + VDG + DLGVSS+Q+D +RGFSF GPLD Sbjct: 78 LDRFGDRVHMAQISFSRFVSALDQLGWETVDGALIDLGVSSLQLDSPERGFSFLHDGPLD 137 Query: 135 MRMSCSGIS---ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 MRM SG+ A ++N+A+ + L RI+ GEE A RIA IV R+ P +TT L Sbjct: 138 MRMD-SGMGVPPAKSLLNKASQETLRRIIRDYGEEPMAGRIAKRIVMTREKTPLETTLQL 196 Query: 192 SSLIQKTVYFSK---NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 + ++++ Y +K +R HPAT++FQALRI VN E+EEL L + L GG L V+ Sbjct: 197 AHVVEQ-AYPAKRRAQSRNHPATKTFQALRIAVNKELEELEAFLEAIPDRLCVGGRLAVI 255 Query: 249 SFHSLEDRLVK-KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 SFHSLEDR+VK + G I + Q +TKK ++P+ E++ N RSR Sbjct: 256 SFHSLEDRIVKHRLRREARGCRCPKEQPICVCGYRPRLQVLTKKPLLPSAEEMEANSRSR 315 Query: 308 SAKLRAGMR 316 SAKLR R Sbjct: 316 SAKLRVAER 324 >gi|221194757|ref|ZP_03567814.1| S-adenosyl-methyltransferase MraW [Atopobium rimae ATCC 49626] gi|221185661|gb|EEE18051.1| S-adenosyl-methyltransferase MraW [Atopobium rimae ATCC 49626] Length = 328 Score = 183 bits (464), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 121/322 (37%), Positives = 178/322 (55%), Gaps = 23/322 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H PV+L +V+ LNP PG+++ D T G G++ K I +D+D A Sbjct: 12 HQPVMLAEVLQQLNPKPGEIVCDCTLGGAGHTVELAKRIVPDGLSIGIDQDDMAHE--AA 69 Query: 77 TMRDYKE----QFSLFQATFSQLQDY-----VPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 R KE +F + F L VP GVD +FD+GVSS Q+D +RGFS+ Sbjct: 70 AARIAKEVPTAEFLPLKGNFGDLDTLLVSAEVP--GVDCFLFDIGVSSPQLDIPERGFSY 127 Query: 128 QKSGPLDMRMSCS--GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 + PLDMRM +A +VVN DLTRIL + G+E A RIAH IV+ R++AP Sbjct: 128 HEDAPLDMRMDPGKQTPTAQEVVNTYTEADLTRILRVFGDETFAPRIAHRIVEVRKTAPI 187 Query: 186 QTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 +TT L +I+ ++ ++ + HPA ++FQALRI VN+E++ L +GLRSA GG Sbjct: 188 KTTLQLVEVIKASIPAAARRHGGHPARKTFQALRIEVNHELDVLERGLRSAIAWANPGGR 247 Query: 245 LIVVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 + V+++HSLEDR+VK F+ S G + + H + TKK + T E++ N Sbjct: 248 ICVIAYHSLEDRIVKHVFSELSQGCICPPDLPVCVCGHVPIVDVKTKKPLTATSEEITQN 307 Query: 304 RRSRSAKLRAGMRTVERSIEDD 325 R+RSA +R V+R+ E++ Sbjct: 308 PRARSALMRVA---VKRNTENE 326 >gi|59801880|ref|YP_208592.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae FA 1090] gi|268601983|ref|ZP_06136150.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae PID18] gi|268604315|ref|ZP_06138482.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae PID1] gi|268687198|ref|ZP_06154060.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae SK-93-1035] gi|293398479|ref|ZP_06642657.1| methylase MraW [Neisseria gonorrhoeae F62] gi|68565408|sp|Q5F6K7|RSMH_NEIG1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|59718775|gb|AAW90180.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090] gi|268586114|gb|EEZ50790.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae PID18] gi|268588446|gb|EEZ53122.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae PID1] gi|268627482|gb|EEZ59882.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae SK-93-1035] gi|291610950|gb|EFF40047.1| methylase MraW [Neisseria gonorrhoeae F62] Length = 318 Score = 183 bits (464), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 117/311 (37%), Positives = 174/311 (55%), Gaps = 20/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMG--SNVIALDRDPFAVSCGQE 76 H+ VLL + + L V +D TFG GG+SR ++G +I D+DP A++ +E Sbjct: 9 HITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFDKDPQAIAVAEE 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 R K + + F+ Q + G VDG +FDLG+SS QID G RGFSF+ PL Sbjct: 69 LARSDK-RVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGSRGFSFRFDAPL 127 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + G+SA++ + A+ +DL ++ GEE+ + +I AIV +R +P TT+ L+ Sbjct: 128 DMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIVRAIVAQRAESPIDTTRKLA 187 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++ + V + + PATR+FQA+RIF+N E+EE+ L LK GG L V++FHS Sbjct: 188 QIVAQNVRTRERGQ-DPATRTFQAIRIFINRELEEVGAVLPQVMCRLKEGGRLAVIAFHS 246 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAH------PAVFQSITKKVVVPTQEDVAFNRRS 306 LEDR+VK+F K + +PS A P I + + P + ++A N R+ Sbjct: 247 LEDRIVKQFV-----KKYSQHEPLPSWAAVREADLPDPPLKIVGRALKPGEAEIAANPRA 301 Query: 307 RSAKLRAGMRT 317 RSA LR RT Sbjct: 302 RSAVLRVAERT 312 >gi|114777870|ref|ZP_01452801.1| methyltransferase [Mariprofundus ferrooxydans PV-1] gi|114551861|gb|EAU54401.1| methyltransferase [Mariprofundus ferrooxydans PV-1] Length = 331 Score = 183 bits (464), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 115/310 (37%), Positives = 170/310 (54%), Gaps = 10/310 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 +H+PVL + I + P +D TFG GG+SR S ++A DRDP AV+ G+ Sbjct: 9 EHIPVLRDAFIDAIFSDPDGCYVDCTFGRGGHSRQLLARLSEKGRLLAFDRDPDAVAAGE 68 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + +F++ A F++L + + +G V G+ FDLGVSS Q+D RGFSF++ GP Sbjct: 69 E-LAQQDARFAIEHADFARLGEVLDARGWCQVTGIGFDLGVSSPQVDQAQRGFSFRQDGP 127 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G S + + ++L IL G+E+ A RIA AI+K TT DL Sbjct: 128 LDMRMDTTQGQPLSRRLEHVSERELIDILRRFGDERYAQRIARAILKAMHDGALTTTSDL 187 Query: 192 SSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 + V ++ HPATR+FQALRI+VN+E++++ G+ +A L+ GG L V+SF Sbjct: 188 ENACFHAVPKQARYGSTHPATRTFQALRIWVNDEMQQIDDGISAAVDHLQPGGRLAVISF 247 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HS EDR ++ +R M + + + KK V P + +VA N RSRS+ Sbjct: 248 HSGEDRRIRDLIEARVHACTCPPQMPVCVCGKKPTMRWLQKKPVRPDEGEVAANPRSRSS 307 Query: 310 KLRAGMRTVE 319 LR R + Sbjct: 308 MLRVAQRLTD 317 >gi|331005086|ref|ZP_08328490.1| S-adenosyl-methyltransferase MraW [gamma proteobacterium IMCC1989] gi|330421141|gb|EGG95403.1| S-adenosyl-methyltransferase MraW [gamma proteobacterium IMCC1989] Length = 314 Score = 183 bits (464), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 121/308 (39%), Positives = 177/308 (57%), Gaps = 24/308 (7%) Query: 20 HVPVLL-EKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPFAVSCGQ 75 H VLL E V AL+ G +D TFG GG+SR + ++A+D+D A++ Sbjct: 10 HQSVLLHESVDALITDVNG-FYVDGTFGRGGHSREVLLRLSEDAQLMAVDKDEQAIAEAD 68 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + D K +FS+ +FSQL ++ + V+G++ DLGVSS Q+D RGFSF + G Sbjct: 69 KQFSDEK-RFSIRHGSFSQLNQWLVEIEKLGKVNGILLDLGVSSPQLDEAHRGFSFMQDG 127 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ G +A++ +N A+ +D+ R+L GEE+ + RIA AIV RQ PF TT + Sbjct: 128 PLDMRMNRTKGETAAEWINSASQEDIARVLKEYGEERFSKRIARAIVDHRQEQPFATTHE 187 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 LS ++ + + + HPATR+FQA+RI +N+E+ +L L A AL GG L+V+SF Sbjct: 188 LSKVVTEANPAWEKGK-HPATRAFQAIRIHINDELSDLDVILEQALAALAVGGRLVVISF 246 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK------KVVVPTQEDVAFNR 304 HSLEDR VK+F +V R +P P + + K KV ++A N Sbjct: 247 HSLEDRRVKRFIRQ---QVQGDR--LPMGV-PVRDEQLNKRLRSLGKVTKAGASELAHNP 300 Query: 305 RSRSAKLR 312 R+RSA +R Sbjct: 301 RARSAVMR 308 >gi|115350509|ref|YP_772348.1| S-adenosyl-methyltransferase MraW [Burkholderia ambifaria AMMD] gi|123322723|sp|Q0BIK9|RSMH_BURCM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|115280497|gb|ABI86014.1| S-adenosyl-methyltransferase MraW [Burkholderia ambifaria AMMD] Length = 313 Score = 183 bits (464), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 118/312 (37%), Positives = 181/312 (58%), Gaps = 21/312 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VLL++ + L P + +D TFG GG+SR+ G +IA D+DP A+ Q Sbjct: 7 HRTVLLDEAVESLVTRPDGIYVDGTFGRGGHSRAVLARLAEGGRLIAFDKDPRAIETAQ- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 R +FS+ +F+ ++D + +G++ GV+ DLGVSS Q+D RGFSF+ GPL Sbjct: 66 --RIEDARFSIVHDSFASMRDALAARGIEKVSGVLLDLGVSSPQVDDPARGFSFRADGPL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTT 188 DMRM + G SA++ + +A+V++LT ++ GEE+ A +IA A+V RR + P TT Sbjct: 124 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDTT 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ ++ V + + PATR+FQA+RI VN E+ +L L +A L+ GG L+V+ Sbjct: 184 GELAQIVGHVVKTREKGK-DPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVI 242 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNRR 305 SFHSLEDR+VK+F + + AV +P A S K++ P++ +V N R Sbjct: 243 SFHSLEDRIVKRFMQAHA-SAPAVDRRLPIRA--VDLPSPPLKIISRQFPSEAEVVANPR 299 Query: 306 SRSAKLRAGMRT 317 +RSA +R R Sbjct: 300 ARSAVMRIAERV 311 >gi|312873217|ref|ZP_07733273.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LEAF 2052A-d] gi|312874604|ref|ZP_07734628.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LEAF 2053A-b] gi|325911728|ref|ZP_08174135.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners UPII 143-D] gi|311089834|gb|EFQ48254.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LEAF 2053A-b] gi|311091228|gb|EFQ49616.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LEAF 2052A-d] gi|325476494|gb|EGC79653.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners UPII 143-D] Length = 317 Score = 183 bits (464), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 119/312 (38%), Positives = 176/312 (56%), Gaps = 17/312 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H VLL + I LN V +DATFG GG++ K SN +I D+D +A+ +++ Sbjct: 7 HYSVLLHETIDNLNLKNDGVYVDATFGGGGHASYLLKQLSNGHLIGFDQDEYAIELAKKS 66 Query: 78 MRDY-----KEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + K + SL F LQ + G+DG+ +DLGVSS Q D +RGFS++ Sbjct: 67 FSEVLKANSKPKLSLVHDNFGNLQQNLAKLGFIDGIDGIYYDLGVSSPQFDQPERGFSYR 126 Query: 129 KSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + LDMRM + A +VN + K+L+ IL G+EK A +IA IV +R P T Sbjct: 127 FNARLDMRMDQTKDLDAYKIVNTWSQKELSNILFKYGDEKYARQIAKNIVAKRAIKPITT 186 Query: 188 TQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T +L +I++ + F++ HPA +SFQA+RI VN+E+E L + L A + LK GG + Sbjct: 187 TFELVDIIKEAIPAFARRTGGHPAKKSFQAIRIAVNDELEVLEKSLLDAIEILKPGGRIC 246 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 V++F SLED++VKK F S V R M IP + P + + I++K +V T +++ N Sbjct: 247 VITFQSLEDKIVKKIFKKYSD-VDIPRGMPQIPDSLKPTL-KIISRKPIVATNKELEENN 304 Query: 305 RSRSAKLRAGMR 316 RS SAKLR + Sbjct: 305 RSHSAKLRVAEK 316 >gi|227524041|ref|ZP_03954090.1| S-adenosyl-methyltransferase [Lactobacillus hilgardii ATCC 8290] gi|227088780|gb|EEI24092.1| S-adenosyl-methyltransferase [Lactobacillus hilgardii ATCC 8290] Length = 315 Score = 183 bits (464), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 111/309 (35%), Positives = 174/309 (56%), Gaps = 12/309 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77 HV VLL + + L+ P +DAT G GG++ K ++ + D+D A+S Q+ Sbjct: 6 HVTVLLHEAVDGLDVDPNGTYVDATLGGGGHTTEILKRIDKGHLYSFDQDEEAISYNQQH 65 Query: 78 MRDYKE--QFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +R Y E + +L F ++ + D+G+ DG+V+DLGVSS Q D RGFS++ Sbjct: 66 LRQYVENDKLTLIHDNFRNIKVALADQGISKIDGIVYDLGVSSPQFDEAGRGFSYRFEAH 125 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + A V+N+ + L RI GEEK + +IA I + R+ P TT DL Sbjct: 126 LDMRMDQDNPVDAWKVINEWPYEKLVRIFYRYGEEKFSKQIARRIERTREDHPINTTTDL 185 Query: 192 SSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +LI++ + ++ + HPA + FQA+RI VN+E+ L L + + L GG + V++F Sbjct: 186 VTLIKEAIPAAARRHGGHPAKKVFQAVRIAVNDELSALEDSLEQSLELLAVGGRISVITF 245 Query: 251 HSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SLEDRLVK F ++ ++ +IP P ++ IT+K ++P ++++A N R+ S Sbjct: 246 QSLEDRLVKTMFKEKASLPELPPNLPVIPKELQPK-YKLITRKPIIPNEDELADNHRAHS 304 Query: 309 AKLRAGMRT 317 AKLR RT Sbjct: 305 AKLRIIERT 313 >gi|116688575|ref|YP_834198.1| S-adenosyl-methyltransferase MraW [Burkholderia cenocepacia HI2424] gi|170731875|ref|YP_001763822.1| S-adenosyl-methyltransferase MraW [Burkholderia cenocepacia MC0-3] gi|263446896|sp|B1JUW4|RSMH_BURCC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446902|sp|A0K478|RSMH_BURCH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|116646664|gb|ABK07305.1| S-adenosyl-methyltransferase MraW [Burkholderia cenocepacia HI2424] gi|169815117|gb|ACA89700.1| S-adenosyl-methyltransferase MraW [Burkholderia cenocepacia MC0-3] Length = 313 Score = 183 bits (464), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 121/311 (38%), Positives = 185/311 (59%), Gaps = 21/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGS--NVIALDRDPFAVSCGQE 76 H VLL++ + L P V +D TFG GG+SR+ ++ S +IA D+DP A+ Q Sbjct: 7 HRTVLLDEAVESLVTRPDGVYVDGTFGRGGHSRAVLARLASAGRLIAFDKDPRAIETAQ- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + D + FS+ +F+ ++D + +GV+ GV+ DLGVSS Q+D RGFSF+ GPL Sbjct: 66 GIEDAR--FSIVHDSFASMRDALAARGVEKVSGVLLDLGVSSPQVDDPARGFSFRADGPL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTT 188 DMRM + G SA++ + +A+V++LT ++ GEE+ A +IA A+V RR + P TT Sbjct: 124 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDTT 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ ++ V + + PATR+FQA+RI VN E+ +L L +A L+ GG L+V+ Sbjct: 184 GELAQIVGHVVKTREKGK-DPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVI 242 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNRR 305 SFHSLEDR+VK+F + + AV +P A S K++ P++ +VA N R Sbjct: 243 SFHSLEDRIVKRFMQAHA-SAPAVDRRLPIRA--VDLPSPPLKIISRQFPSEAEVAANPR 299 Query: 306 SRSAKLRAGMR 316 +RSA +R R Sbjct: 300 ARSAVMRIAER 310 >gi|312871981|ref|ZP_07732063.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LEAF 2062A-h1] gi|311092558|gb|EFQ50920.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LEAF 2062A-h1] Length = 315 Score = 183 bits (464), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 119/312 (38%), Positives = 176/312 (56%), Gaps = 17/312 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H VLL + I LN V +DATFG GG++ K SN +I D+D +A+ +++ Sbjct: 5 HYSVLLHETIDNLNLKNDGVYVDATFGGGGHASYLLKQLSNGHLIGFDQDEYAIELAKKS 64 Query: 78 MRDY-----KEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + K + SL F LQ + G+DG+ +DLGVSS Q D +RGFS++ Sbjct: 65 FSEVLKANSKPKLSLVHDNFGNLQQNLAKLGFIDGIDGIYYDLGVSSPQFDQPERGFSYR 124 Query: 129 KSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + LDMRM + A +VN + K+L+ IL G+EK A +IA IV +R P T Sbjct: 125 FNARLDMRMDQTKDLDAYKIVNTWSQKELSNILFKYGDEKYARQIAKNIVAKRAIKPITT 184 Query: 188 TQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T +L +I++ + F++ HPA +SFQA+RI VN+E+E L + L A + LK GG + Sbjct: 185 TFELVDIIKEAIPAFARRTGGHPAKKSFQAIRIAVNDELEVLEKSLLDAIEILKPGGRIC 244 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 V++F SLED++VKK F S V R M IP + P + + I++K +V T +++ N Sbjct: 245 VITFQSLEDKIVKKIFKKYSD-VDIPRGMPQIPDSLKPTL-KIISRKPIVATNKELEENN 302 Query: 305 RSRSAKLRAGMR 316 RS SAKLR + Sbjct: 303 RSHSAKLRVAEK 314 >gi|113478175|ref|YP_724236.1| S-adenosyl-methyltransferase MraW [Trichodesmium erythraeum IMS101] gi|123351672|sp|Q10VG1|RSMH_TRIEI RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|110169223|gb|ABG53763.1| S-adenosyl-methyltransferase MraW [Trichodesmium erythraeum IMS101] Length = 283 Score = 183 bits (464), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 113/299 (37%), Positives = 166/299 (55%), Gaps = 28/299 (9%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76 +H+PVL ++I+ L P + LDAT G GG+++ V +A+D+D A+ Q Sbjct: 2 NHIPVLSSELISGLVIRPRGLYLDATLGFGGHTKLILAAAPEVKVVAIDQDKQALDSSQT 61 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK-GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + Y + F+ DY P DG++ DLG++S+Q+D +RGFSF+ G LDM Sbjct: 62 LLASYNSNIQFCHSNFA---DYDPQNLKFDGILADLGINSVQLDTPERGFSFRHQGKLDM 118 Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM+ I+A+ ++N L I GEE+ + RIA I++ R P +TT +L+ + Sbjct: 119 RMNQQQTITAAKIINHWEEVKLANIFYTYGEERLSRRIARKIIESR---PLETTTELAEV 175 Query: 195 IQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 + V Y + RIHPATR FQALRI VN E+ L L++A LK GG + ++SFHSL Sbjct: 176 VANCVPYKYRYGRIHPATRVFQALRIEVNQELSRLETFLKNAPHWLKIGGRIGIISFHSL 235 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 EDRLVK + R+ ++ V +TKK + P +VA N R+RSAKLR Sbjct: 236 EDRLVKH--SLRNASILKV---------------LTKKPIQPQDNEVAINPRARSAKLR 277 >gi|259501653|ref|ZP_05744555.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Lactobacillus iners DSM 13335] gi|302191140|ref|ZP_07267394.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners AB-1] gi|259166938|gb|EEW51433.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Lactobacillus iners DSM 13335] Length = 315 Score = 183 bits (464), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 119/312 (38%), Positives = 176/312 (56%), Gaps = 17/312 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H VLL + I LN V +DATFG GG++ K SN +I D+D +A+ +++ Sbjct: 5 HYSVLLHETIDNLNLKNDGVYVDATFGGGGHASYLLKQLSNGHLIGFDQDEYAIELAKKS 64 Query: 78 MRDY-----KEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + K + SL F LQ + G+DG+ +DLGVSS Q D +RGFS++ Sbjct: 65 FSEVLKANSKPKLSLVHDNFGNLQQNLAKLGFIDGIDGIYYDLGVSSPQFDQPERGFSYR 124 Query: 129 KSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + LDMRM + A +VN + K+L+ IL G+EK A +IA IV +R P T Sbjct: 125 FNARLDMRMDQTKDLDAYKIVNTWSQKELSNILFKYGDEKYARQIAKNIVAKRAIKPITT 184 Query: 188 TQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T +L +I++ + F++ HPA +SFQA+RI VN+E+E L + L A + LK GG + Sbjct: 185 TFELVDIIKEAIPAFARRTGGHPAKKSFQAIRIAVNDELEVLEKSLLDAIEILKPGGRIC 244 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 V++F SLED++VKK F S V R M IP + P + + I++K +V T +++ N Sbjct: 245 VITFQSLEDKIVKKIFKKYSD-VDIPRGMPQIPDSLKPTL-KIISRKPIVATDKELEENN 302 Query: 305 RSRSAKLRAGMR 316 RS SAKLR + Sbjct: 303 RSHSAKLRVAEK 314 >gi|300702954|ref|YP_003744556.1| s-adenosyl-dependent methyl transferase [Ralstonia solanacearum CFBP2957] gi|299070617|emb|CBJ41912.1| S-adenosyl-dependent methyl transferase [Ralstonia solanacearum CFBP2957] Length = 319 Score = 182 bits (463), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 120/313 (38%), Positives = 181/313 (57%), Gaps = 21/313 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VL ++ + L + +D TFG GG+SR + G +IA D+DP A++ Sbjct: 11 HQTVLRDEAVDALLWRDDGIYIDGTFGRGGHSRLLLERLGPGGRLIAFDKDPAAITEAG- 69 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 T+ D + F++ +F+ L + +G V GV+ DLG+SS QID G RGFSF+ GPL Sbjct: 70 TVEDAR--FAIEHDSFAHLDAALDARGIGRVAGVLLDLGISSPQIDEGARGFSFRMDGPL 127 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTT 188 DMRM + GI+A+ + +A+ +D+ R++ GEE+ A +IA AIV RR + P T Sbjct: 128 DMRMDTTRGITAAQWLAEADERDIARVIRDYGEERFAVQIAKAIVARRSESGTRGPLDRT 187 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L++L+ + V + + PATR+FQALRI VN E+ +L GL++A + L+ GG L+V+ Sbjct: 188 SELAALVAQAVKTREKGQ-DPATRTFQALRIHVNQELADLETGLKAAFERLEQGGRLVVI 246 Query: 249 SFHSLEDRLVKKF---FASRSGKVMAVRHMIPSNAH--PAVFQSITKKVVVPTQEDVAFN 303 SFHSLEDR+VK+F A P AH PA + + V P++ +V+ N Sbjct: 247 SFHSLEDRIVKRFMQALARPEQSAAPEMRRAPLRAHELPAPQLRLLGR-VRPSEAEVSAN 305 Query: 304 RRSRSAKLRAGMR 316 R+RSA +R R Sbjct: 306 PRARSAIMRVAER 318 >gi|226307047|ref|YP_002767007.1| methyltransferase MraW [Rhodococcus erythropolis PR4] gi|262825456|sp|C1A0Y3|RSMH_RHOE4 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|226186164|dbj|BAH34268.1| methyltransferase MraW [Rhodococcus erythropolis PR4] Length = 332 Score = 182 bits (463), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 115/325 (35%), Positives = 176/325 (54%), Gaps = 30/325 (9%) Query: 20 HVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPF 69 HVPVLL + LL PA G ++DAT G GG+S F G ++I LDRD Sbjct: 12 HVPVLLHRADDLLGPAITAVGDGGEGAYMIDATLGLGGHSEFFLGKYPGLHLIGLDRDTN 71 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSSMQIDCGDR 123 A+ E + + ++ + T+ ++D + G V ++FDLGVSSMQ+D DR Sbjct: 72 ALRIASERLAPFADRTTFVHTTYDGIEDALEQAGLPSTESVHAILFDLGVSSMQLDEADR 131 Query: 124 GFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GF++ PLDMRM + G++A++V+N + DL RIL GEE+ A +IA I+++R+ Sbjct: 132 GFAYSIDAPLDMRMDQTVGLTAAEVLNTYSHGDLARILSTYGEERFAGKIASEILRQRER 191 Query: 183 APFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 PF T+ L L+ +T+ ++ HPA R+FQALRI VN E++ L + + AL Sbjct: 192 EPFTTSAALVELLYRTIPAATRRTGGHPAKRTFQALRIEVNAELDSLRAAVPAGLDALAV 251 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRS------GKVMAVRHMIPSNAHPAVFQSITKKVVVP 295 GG ++ +S+ SLEDR+VK RS G + + M P F+ +T+ Sbjct: 252 GGRVVFMSYQSLEDRVVKAELVPRSKSTSPEGLPVELPGMGPE------FRILTRGAERA 305 Query: 296 TQEDVAFNRRSRSAKLRAGMRTVER 320 +++++ N RS +LRA R R Sbjct: 306 SEQEIEENPRSAPVRLRAAERISRR 330 >gi|329921076|ref|ZP_08277599.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners SPIN 1401G] gi|328934983|gb|EGG31472.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners SPIN 1401G] Length = 315 Score = 182 bits (463), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 119/312 (38%), Positives = 176/312 (56%), Gaps = 17/312 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H VLL + I LN V +DATFG GG++ K SN +I D+D +A+ +++ Sbjct: 5 HYSVLLHETIDNLNLKNDGVYVDATFGGGGHASYLLKQLSNGHLIGFDQDEYAIELAKKS 64 Query: 78 MRDY-----KEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + K + SL F LQ + G+DG+ +DLGVSS Q D +RGFS++ Sbjct: 65 FSEVLKANSKPKLSLVHDNFGNLQQNLAKLGFIDGIDGIYYDLGVSSPQFDQPERGFSYR 124 Query: 129 KSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + LDMRM + A +VN + K+L+ IL G+EK A +IA IV +R P T Sbjct: 125 FNARLDMRMDQTKDLDAYKIVNTWSQKELSNILFKYGDEKYARQIAKNIVAKRAIKPITT 184 Query: 188 TQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T +L +I++ + F++ HPA +SFQA+RI VN+E+E L + L A + LK GG + Sbjct: 185 TFELVDIIKEAIPAFARRTGGHPAKKSFQAIRIAVNDELEVLEKSLLEAIEILKPGGRIC 244 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 V++F SLED++VKK F S V R M IP + P + + I++K +V T +++ N Sbjct: 245 VITFQSLEDKIVKKIFKKYSD-VDIPRGMPQIPDSLKPTL-KIISRKPIVATDKELEENN 302 Query: 305 RSRSAKLRAGMR 316 RS SAKLR + Sbjct: 303 RSHSAKLRVAEK 314 >gi|309803099|ref|ZP_07697196.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LactinV 11V1-d] gi|308164607|gb|EFO66857.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LactinV 11V1-d] Length = 315 Score = 182 bits (463), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 119/312 (38%), Positives = 176/312 (56%), Gaps = 17/312 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H VLL + I LN V +DATFG GG++ K SN +I D+D +A+ +++ Sbjct: 5 HYSVLLHETIDNLNLKNDGVYVDATFGGGGHASYLLKQLSNGHLIGFDQDEYAIELAKKS 64 Query: 78 MRDY-----KEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + K + SL F LQ + G+DG+ +DLGVSS Q D +RGFS++ Sbjct: 65 FSEVLKANSKPKLSLVHDNFGNLQQNLAKLGFIDGIDGIYYDLGVSSPQFDQPERGFSYR 124 Query: 129 KSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + LDMRM + A +VN + K+L+ IL G+EK A +IA IV +R P T Sbjct: 125 FNARLDMRMDQTKDLDAYKIVNTWSQKELSNILFKYGDEKYARQIAKNIVAKRAIKPITT 184 Query: 188 TQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T +L +I++ + F++ HPA +SFQA+RI VN+E+E L + L A + LK GG + Sbjct: 185 TFELVDIIKEAIPAFARRTGGHPAKKSFQAIRIAVNDELEVLEKSLLDAIEILKPGGRIC 244 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 V++F SLED++VKK F S V R M IP + P + + I++K +V T +++ N Sbjct: 245 VITFQSLEDKIVKKIFKKYSD-VDIPRGMPQIPDSLRPTL-KIISRKPIVATDKELEENN 302 Query: 305 RSRSAKLRAGMR 316 RS SAKLR + Sbjct: 303 RSHSAKLRVAEK 314 >gi|268318248|ref|YP_003291967.1| S-adenosyl-methyltransferase MraW [Rhodothermus marinus DSM 4252] gi|262335782|gb|ACY49579.1| S-adenosyl-methyltransferase MraW [Rhodothermus marinus DSM 4252] Length = 327 Score = 182 bits (463), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 114/310 (36%), Positives = 175/310 (56%), Gaps = 17/310 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 HVPVL + V+ L P +DAT G GG++ + VI +DRDP A+ + Sbjct: 21 HVPVLWKAVVEGLVTDPAGCYVDATIGGGGHAAALLDALAPEGRVIGIDRDPEALEAVRR 80 Query: 77 TMRDYKE--QFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + D E + L Q F+ L+ + GV DG++ DLGVSS Q+D RGFSFQ G Sbjct: 81 RLSDAIEAGRLQLVQGNFADLEAILDRLGVAQIDGLLLDLGVSSHQLDEALRGFSFQAEG 140 Query: 132 PLDMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM + G +A+ ++ + + +L +L GEE +A ++A AI + R P +TT Sbjct: 141 PLDMRMDPTSPGPTAAQLLERWSEYELAEVLRRYGEEPRARKLARAICRAR---PIRTTA 197 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 +L+ ++++ V S R FQALRI VN+E++ L + L +A + ++ GG L+V+S Sbjct: 198 ELAEVVRREV--SPKEATKTLARVFQALRIAVNDELQALERALEAATRRVRPGGRLVVLS 255 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 +HSLEDR VK+F + K VR P ++ +T++ + P+ ++VA N R+RSA Sbjct: 256 YHSLEDRRVKRFLRYGNLKGEPVRDFYGRLIAP--WRPLTRRAIRPSDDEVAANPRARSA 313 Query: 310 KLRAGMRTVE 319 +LR R E Sbjct: 314 RLRIAERVAE 323 >gi|224541552|ref|ZP_03682091.1| hypothetical protein CATMIT_00722 [Catenibacterium mitsuokai DSM 15897] gi|224525519|gb|EEF94624.1| hypothetical protein CATMIT_00722 [Catenibacterium mitsuokai DSM 15897] Length = 315 Score = 182 bits (463), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 111/303 (36%), Positives = 172/303 (56%), Gaps = 10/303 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYS-RSFCKMGS-NVIALDRDPFAVSCGQE 76 +H VLL++ I LN + +D T G GG+S R K+ + ++ D+D A+ +E Sbjct: 6 EHYSVLLDETIDALNIKEDGIYVDCTLGGGGHSSRILEKLTTGHLYCFDQDAHAIEAARE 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 M + F++ A F +++ + +GV DG+VFDLGVSS Q D +RGFS+ L Sbjct: 66 RMSQISDNFTIIHANFKEIKARLSMEGVYKVDGIVFDLGVSSPQFDNAERGFSYNTDARL 125 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +SA +VVN + +DL IL +EK A IA I K RQ P +TT +L Sbjct: 126 DMRMNQEQPLSAYEVVNNYSYQDLVTILYKYADEKFAKSIARMIEKERQVKPIETTFELV 185 Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +++K + ++ HPA R+FQA+RI VN+E+ + L + L GG + V+SFH Sbjct: 186 EIVKKAIPARARRTGGHPAKRTFQAIRIEVNDELNVFERALTDSLDLLNVGGRVAVISFH 245 Query: 252 SLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLED++ K F ++ + +IP P F+ +T+K +V +++++ NRRS SA Sbjct: 246 SLEDKITKYMFNEKTAVPDLPMGMPVIPEEYQPH-FKKVTRKPIVADEKELSENRRSHSA 304 Query: 310 KLR 312 KLR Sbjct: 305 KLR 307 >gi|229490464|ref|ZP_04384305.1| S-adenosyl-methyltransferase MraW [Rhodococcus erythropolis SK121] gi|229322754|gb|EEN88534.1| S-adenosyl-methyltransferase MraW [Rhodococcus erythropolis SK121] Length = 336 Score = 182 bits (463), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 115/325 (35%), Positives = 176/325 (54%), Gaps = 30/325 (9%) Query: 20 HVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPF 69 HVPVLL + LL PA G ++DAT G GG+S F G ++I LDRD Sbjct: 16 HVPVLLHRADDLLGPAITAVGDGGAGAYMIDATLGLGGHSEFFLGKYPGLHLIGLDRDTN 75 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSSMQIDCGDR 123 A+ E + + ++ + T+ ++D + G V ++FDLGVSSMQ+D DR Sbjct: 76 ALRIASERLAPFADRTTFVHTTYDGIEDALEQAGLPSTESVHAILFDLGVSSMQLDEADR 135 Query: 124 GFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GF++ PLDMRM + G++A++V+N + DL RIL GEE+ A +IA I+++R+ Sbjct: 136 GFAYSIDAPLDMRMDQTVGLTAAEVLNTYSHGDLARILSTYGEERFAGKIASEILRQRER 195 Query: 183 APFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 PF T+ L L+ +T+ ++ HPA R+FQALRI VN E++ L + + AL Sbjct: 196 EPFTTSAALVELLYRTIPAATRRTGGHPAKRTFQALRIEVNAELDSLRAAVPAGLDALAV 255 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRS------GKVMAVRHMIPSNAHPAVFQSITKKVVVP 295 GG ++ +S+ SLEDR+VK RS G + + M P F+ +T+ Sbjct: 256 GGRVVFMSYQSLEDRVVKAELVPRSKSTSPEGLPVELPGMGPE------FRILTRGAERA 309 Query: 296 TQEDVAFNRRSRSAKLRAGMRTVER 320 +++++ N RS +LRA R R Sbjct: 310 SEQEIEENPRSAPVRLRAAERISRR 334 >gi|308184491|ref|YP_003928624.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori SJM180] gi|308060411|gb|ADO02307.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori SJM180] Length = 308 Score = 182 bits (463), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 118/302 (39%), Positives = 178/302 (58%), Gaps = 16/302 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVSCGQET 77 H VLL++V+ P V++D T G GG+S++ K +I +D+D FA +E Sbjct: 8 HQSVLLQEVLQAFAPLEKGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFAQEIAKER 67 Query: 78 MRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 +++++ +++L F++ ++ + G + GV+ DLGVSS+Q+D +RGF+F S LD Sbjct: 68 LKEFEGRYNLLSGGFAKRFKEALEIHGERIKGVLVDLGVSSLQLDDDNRGFNFH-SHALD 126 Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM S ++A V+N V L +I GE K+ +IAH I +R PF+ +DLS Sbjct: 127 MRMDLESELNAQKVINSYPVVALEKIFRDYGEIKEYKKIAHKIAERCAKKPFKDAKDLSE 186 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 + SKN +IHPAT FQA+RI VN+E+EEL + L+ A + LK G +L V+SFHSL Sbjct: 187 FLSS---LSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCA-RNLK-GAILCVISFHSL 241 Query: 254 EDRLVKKFFASRSGKVM---AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 ED LVK F + + + SN H A+ +TKK + P+ E++ NRRSRSAK Sbjct: 242 EDALVKNAFKDYAKNCICDPSSFKCACSNNH-ALGAILTKKPITPSPEEIKNNRRSRSAK 300 Query: 311 LR 312 +R Sbjct: 301 MR 302 >gi|197302579|ref|ZP_03167634.1| hypothetical protein RUMLAC_01308 [Ruminococcus lactaris ATCC 29176] gi|197298477|gb|EDY33022.1| hypothetical protein RUMLAC_01308 [Ruminococcus lactaris ATCC 29176] Length = 326 Score = 182 bits (463), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 106/304 (34%), Positives = 174/304 (57%), Gaps = 11/304 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQ 75 +H+ VLL + + LN P + +DAT G GG++ C ++GS +I +D+D A+ Sbjct: 19 EHISVLLYETVDGLNVKPDGIYVDATLGGGGHAYEVCSRLGSQGRLIGIDQDADAIRAAG 78 Query: 76 ETMRDYKEQFSLFQATFS----QLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + + E+ ++ ++ + QLQ DK VDG+ DLGVSS Q+D +RGFS++ Sbjct: 79 KRLECFGEKVTIVRSNYCDMKQQLQKLGIDK-VDGITVDLGVSSYQLDTAERGFSYRVDA 137 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM ++A D++N + +L R++ GE++ A IA IV R+ AP +TT Sbjct: 138 PLDMRMDQRQKMTARDIINDYSESELYRVIRDYGEDRFAKNIAKHIVAERKKAPIETTGQ 197 Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I + + HP+ R+FQA+RI +N+E++ L L + L GG L +++ Sbjct: 198 LNEIISHAIPMKVRKTSGHPSKRTFQAIRIELNHELDVLRDTLDDMIELLNPGGRLCIIT 257 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK F H + + + + IT+K ++P++E++ N RS+S Sbjct: 258 FHSLEDRIVKSSFRKNENPCTCPSHFPVCVCGNVSKGKVITRKPILPSEEELEVNSRSKS 317 Query: 309 AKLR 312 AKLR Sbjct: 318 AKLR 321 >gi|169824308|ref|YP_001691919.1| S-adenosyl-methyltransferase [Finegoldia magna ATCC 29328] gi|263447055|sp|B0S0Y9|RSMH_FINM2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|167831113|dbj|BAG08029.1| S-adenosyl-methyltransferase [Finegoldia magna ATCC 29328] Length = 312 Score = 182 bits (463), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 106/308 (34%), Positives = 169/308 (54%), Gaps = 9/308 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 HVP+LL + I LN GK+ +D T G G+SR K N +I D+D A+ ++ Sbjct: 5 HVPILLNECIENLNIRDGKIYVDCTVGGAGHSREIAKRIGNGKLICFDQDEDALKVAKQR 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + ++ ++ + F +++ + + G VDG++ D+GVSS QID RGFS+ LD Sbjct: 65 LEEFGDKIIFIKDNFKNIKNDLHNLGIEKVDGILMDIGVSSYQIDEDSRGFSYMHDADLD 124 Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM S ISA D+VN + +DL ++ +EK A RIA I R++ P TT +L Sbjct: 125 MRMDQSNPISAKDIVNTYSKEDLENVIFKYSDEKWAKRIAEFICNARETKPINTTFELVE 184 Query: 194 LIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+K + N + H A ++FQA+RI VN E++ L Q + + L G + +++FH Sbjct: 185 VIEKAIPKKVRMNQKGHSAKKTFQAIRIEVNKELDVLEQAVGDSIDLLNPEGRICIITFH 244 Query: 252 SLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLED++ K F R G + + H + IT+K + P++E++ N R+RSAK Sbjct: 245 SLEDKICKDIFRQRQKGCICPPEIPVCVCNHKPEIKIITRKPIEPSKEELEQNSRARSAK 304 Query: 311 LRAGMRTV 318 LR + + Sbjct: 305 LRVAEKII 312 >gi|291550007|emb|CBL26269.1| S-adenosyl-methyltransferase MraW [Ruminococcus torques L2-14] Length = 311 Score = 182 bits (463), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 104/303 (34%), Positives = 171/303 (56%), Gaps = 9/303 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQ 75 +HV VLL + + LN P + +DAT G GG++ C K+G +I +D+D A+ Sbjct: 4 EHVSVLLHETVDGLNVKPDGIYVDATLGGGGHAYEVCTKLGEQGRLIGIDQDADAIKAAG 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + + E+ ++ ++ + ++ + + G VDG+ DLGVSS Q+D +RGFS++ P Sbjct: 64 KRLEGFGEKVTIIRSNYCDMKPRLHEIGIDKVDGITVDLGVSSYQLDTAERGFSYRVDAP 123 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM ++A D+VN + +L R++ GE++ A IA IV R P +TT L Sbjct: 124 LDMRMDQRQKMTARDIVNDYSESELYRVIRDYGEDRFAKNIAKHIVAERAKGPIETTGQL 183 Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 + +I + + HP+ R+FQALRI +N+E++ L L L GG L +++F Sbjct: 184 NEIISHAIPMKIQKTSGHPSKRTFQALRIELNHELDVLRDTLDDMIDLLNPGGRLCIITF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK F + H + + + + IT+K ++P++E++ N RS+SA Sbjct: 244 HSLEDRIVKSSFRKNENPCICPSHFPVCVCGNVSKGKVITRKPILPSEEELTVNSRSKSA 303 Query: 310 KLR 312 KLR Sbjct: 304 KLR 306 >gi|107021630|ref|YP_619957.1| S-adenosyl-methyltransferase MraW [Burkholderia cenocepacia AU 1054] gi|123245314|sp|Q1BZH1|RSMH_BURCA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|105891819|gb|ABF74984.1| methyltransferase [Burkholderia cenocepacia AU 1054] Length = 313 Score = 182 bits (463), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 121/311 (38%), Positives = 185/311 (59%), Gaps = 21/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGS--NVIALDRDPFAVSCGQE 76 H VLL++ + L P V +D TFG GG+SR+ ++ S +IA D+DP A+ Q Sbjct: 7 HRTVLLDEAVESLVTRPDGVCVDGTFGRGGHSRAVLARLASAGRLIAFDKDPRAIETAQ- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + D + FS+ +F+ ++D + +GV+ GV+ DLGVSS Q+D RGFSF+ GPL Sbjct: 66 GIEDAR--FSIVHDSFASMRDALAARGVEKVSGVLLDLGVSSPQVDDPARGFSFRADGPL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTT 188 DMRM + G SA++ + +A+V++LT ++ GEE+ A +IA A+V RR + P TT Sbjct: 124 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDTT 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ ++ V + + PATR+FQA+RI VN E+ +L L +A L+ GG L+V+ Sbjct: 184 GELAQIVGHVVKTREKGK-DPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVI 242 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNRR 305 SFHSLEDR+VK+F + + AV +P A S K++ P++ +VA N R Sbjct: 243 SFHSLEDRIVKRFMQAHA-SAPAVDRRLPIRA--VDLPSPPLKIISRQFPSEAEVAANPR 299 Query: 306 SRSAKLRAGMR 316 +RSA +R R Sbjct: 300 ARSAVMRIAER 310 >gi|316984918|gb|EFV63874.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis H44/76] gi|325199600|gb|ADY95055.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis H44/76] Length = 316 Score = 182 bits (463), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 113/287 (39%), Positives = 165/287 (57%), Gaps = 10/287 (3%) Query: 39 VILDATFGAGGYSR-SFCKMG--SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95 V +D TFG GG+SR ++G +I D+DP A++ +E R K + + F+ Sbjct: 16 VYVDGTFGRGGHSRLILSRLGDAGRLIVFDKDPQAIAVAEELARSDK-RVGVVHGGFASF 74 Query: 96 QDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQA 151 Q + G VDG +FDLG+SS QID G RGFSF+ PLDMRM + G+SA++ + A Sbjct: 75 QTALDGLGIGKVDGALFDLGISSPQIDDGSRGFSFRFDAPLDMRMDTTRGMSAAEWIAVA 134 Query: 152 NVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPAT 211 + +DL ++ GEE+ + RIA AIV +R +P TT+ L+ ++ + V + + PAT Sbjct: 135 SEQDLHEVIKNYGEERFSRRIARAIVAQRAESPIDTTRKLAQIVAQNVRTRERGQ-DPAT 193 Query: 212 RSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMA 271 R+FQA+RIF+N E+EE+ L LK GG L V++FHSLEDR+VK+F S Sbjct: 194 RTFQAVRIFINRELEEVGAVLPQVMCRLKEGGRLAVIAFHSLEDRIVKQFVKKYSQHAPL 253 Query: 272 VRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 R A P + I + + P + ++A N R+RSA LR RT Sbjct: 254 PRWAAVREADLPELPLKIVGRALKPGEAEIAANPRARSAVLRVAERT 300 >gi|241760229|ref|ZP_04758325.1| S-adenosyl-methyltransferase MraW [Neisseria flavescens SK114] gi|241319340|gb|EER55805.1| S-adenosyl-methyltransferase MraW [Neisseria flavescens SK114] Length = 320 Score = 182 bits (463), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 114/306 (37%), Positives = 168/306 (54%), Gaps = 10/306 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76 HV VLL + + L + +D TFG GG+SR S ++ D+DP A++ E Sbjct: 9 HVTVLLHEAVDALAIRKDGIYVDGTFGRGGHSRLILSRLSEQGRLVVFDKDPEAIAVANE 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + K + S+ F Q + + G+D G +FDLG+SS QID G RGFSF+ PL Sbjct: 69 LAKQDK-RVSVVHNGFETFQTALDELGIDKIDGALFDLGISSPQIDDGSRGFSFRFDAPL 127 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + G+SA++ + A+ +DL ++ GEE+ + +IA AIV +R+ +P TT+ L+ Sbjct: 128 DMRMDPTRGMSAAEWIATASEQDLHEVIKNYGEERFSRQIARAIVAQREESPIDTTRKLA 187 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 L+ + V + + PATR+FQA+RIF+N E+EE+ L LK GG L V++FHS Sbjct: 188 QLVAQNVRTRERGQ-DPATRTFQAVRIFINRELEEVEAVLPQVAGRLKEGGRLAVIAFHS 246 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK+F S R + A P K + P + N R+RSA L Sbjct: 247 LEDRIVKQFIKKYSQHAPLPRWAVVKEADLPQPPLKAVGKAIKPGSTETEANPRARSAVL 306 Query: 312 RAGMRT 317 R R+ Sbjct: 307 RVAERS 312 >gi|108757260|ref|YP_633751.1| S-adenosyl-methyltransferase MraW [Myxococcus xanthus DK 1622] gi|122980788|sp|Q1D0S2|RSMH_MYXXD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|108461140|gb|ABF86325.1| S-adenosyl-methyltransferase MraW [Myxococcus xanthus DK 1622] Length = 304 Score = 182 bits (463), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 118/303 (38%), Positives = 166/303 (54%), Gaps = 22/303 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H VLL + + LL PA G+VI+D T G GG+S + G+ V+ +DRDP A++ + Sbjct: 8 HQTVLLREAVDLLRPADGRVIIDGTLGGGGHSEALLASGATVVGVDRDPVALAAATARL- 66 Query: 80 DYKEQFSLFQATFSQL----QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 +F F++L D +P VDGV+ DLGVSS Q+D +RGFSF K GPLDM Sbjct: 67 GANPRFQGRAGNFAELPRVAADLLP---VDGVLVDLGVSSPQLDVAERGFSFSKDGPLDM 123 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RM G +A++++ + ++L RIL GEE A IA + K + + + + + Sbjct: 124 RMGPDGPTAAELIATTDERELVRILKDYGEEPFARPIARELKKALPTRTLEAAEVVKRAV 183 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + + NRIH ATR+FQALR+ VN E+E L L + LK GG V++FHSLED Sbjct: 184 PRKAW---PNRIHVATRTFQALRMAVNGELEALDALLAAIPGLLKVGGRAAVIAFHSLED 240 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAV------FQSITKKVVVPTQEDVAFNRRSRSA 309 R VK+ F + +A R P V F +TKK V ++ +V N RSRSA Sbjct: 241 RKVKEAF-----RALAGRCTCPPGLPVCVCSGVGDFALVTKKAVAASEAEVEANPRSRSA 295 Query: 310 KLR 312 LR Sbjct: 296 HLR 298 >gi|288904625|ref|YP_003429846.1| S-adenosyl-dependent methyltransferase MraW [Streptococcus gallolyticus UCN34] gi|288731350|emb|CBI12901.1| S-adenosyl-dependent methyltransferase MraW [Streptococcus gallolyticus UCN34] Length = 316 Score = 182 bits (463), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 114/309 (36%), Positives = 176/309 (56%), Gaps = 14/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMG--SNVIALDRDPFAVSCGQE 76 H+ VLL + + +L+ P V +DAT G G+S K+G ++ A D+D A+ Q Sbjct: 7 HITVLLHETVDMLDIKPDGVYVDATLGGAGHSEYLLSKLGPTGHLYAFDQDQTAIDNAQI 66 Query: 77 TMRDYKE--QFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++DY E Q + + F L + GV DG+++DLGVSS Q+D +RGFS++K Sbjct: 67 RLKDYIEKGQVTFIKDNFRNLASNLASHGVTEIDGILYDLGVSSPQLDERERGFSYKKDA 126 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ +SA DVVN + DL RI GE+K + +IA I + R+ P +TT + Sbjct: 127 PLDMRMNRDQDLSAYDVVNTYDYHDLVRIFFKYGEDKFSKQIARKIEQARKVKPIETTTE 186 Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ +I K+ +K + HPA + FQA+RI VN+E+ + ++ A + L G + V+ Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIELLAVDGRISVI 245 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F S V IP + P + + +K ++P++E++ N RS Sbjct: 246 TFHSLEDRLTKQLFKEASTVDVPKGLPFIPEDMQPKL-ALVNRKPILPSEEELEVNNRSH 304 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 305 SAKLRVARK 313 >gi|85714965|ref|ZP_01045950.1| methyltransferase [Nitrobacter sp. Nb-311A] gi|85698162|gb|EAQ36034.1| methyltransferase [Nitrobacter sp. Nb-311A] Length = 419 Score = 182 bits (462), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 127/288 (44%), Positives = 173/288 (60%), Gaps = 5/288 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQETM 78 HVPVL + +A+L G V +DATFGAGGYSR+ + VI +DRDP A++ G + Sbjct: 95 HVPVLGGEAVAMLALRAGGVYVDATFGAGGYSRAILATADTRVIGIDRDPAAIAGGSALV 154 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV---SSMQIDCGDRGFSFQKSGPLDM 135 + + +L + FS L + V V + SSMQ+D DRGFSF+ GPLDM Sbjct: 155 EESGGRLTLVEDRFSNLASVCAAQDVAVVDGVVMDVGVSSMQLDEADRGFSFRLDGPLDM 214 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RMS G +A+DVV A+ DL I+ I GEE+++ +A AIV R+ P TT+ L+ ++ Sbjct: 215 RMSGHGPTAADVVAHASETDLADIIYIFGEERRSRAVARAIVAARRHGPIATTRALADVV 274 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 K V +K + IHPATR+FQALRIFVN E++EL L +AE+ LK GG L VVSFHSLED Sbjct: 275 SKVVR-AKPHEIHPATRTFQALRIFVNEELDELVAALAAAERVLKPGGRLAVVSFHSLED 333 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 R+VK F A R + RH F +TK+ + P +E++ N Sbjct: 334 RIVKNFLARRGKRGGGSRHRPEIEQGSPSFAILTKRPLTPGEEEMHAN 381 >gi|295425110|ref|ZP_06817815.1| S-adenosyl-methyltransferase MraW [Lactobacillus amylolyticus DSM 11664] gi|295065169|gb|EFG56072.1| S-adenosyl-methyltransferase MraW [Lactobacillus amylolyticus DSM 11664] Length = 315 Score = 182 bits (462), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 116/312 (37%), Positives = 178/312 (57%), Gaps = 17/312 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGS-NVIALDRDPFAVSCGQET 77 H VLL + I L P G + +DATFG GG+++ K+ + +I D+D +A+ + Sbjct: 5 HTSVLLHETIDNLKPKDGGLYVDATFGGGGHAKYLLSKLNTGTLIGFDQDEYAIKAAKLN 64 Query: 78 MRDYKEQ-----FSLFQATFSQL-QDYV----PDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 D ++ L FS L QD V PD G+DG+ +DLGVSS Q D +RGFS+ Sbjct: 65 FTDLLQEDSNPRLQLVHDNFSHLEQDLVKLGYPD-GIDGIYYDLGVSSPQFDQAERGFSY 123 Query: 128 QKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + + LDMRM S + A +VNQ++ +DL IL G+EK + +IAH IV++R+ P + Sbjct: 124 RYNARLDMRMDQSKELDAYQLVNQSSQRDLANILYKYGDEKFSRQIAHRIVEKRREKPIE 183 Query: 187 TTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT +L +I++ + +++ HPA +SFQALR+ VN+E+E L L A K L+ G + Sbjct: 184 TTFELVDIIKEAIPAYARRTGGHPAKKSFQALRVAVNHELEVLQTSLEEAVKLLRPKGRI 243 Query: 246 IVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 V++F S ED++VKK F S +V MIP P + + + +K + + ++ N Sbjct: 244 SVITFQSDEDKIVKKIFKKYSEVEVPRGMPMIPDGMKPTL-RLVNRKPITASALELENNN 302 Query: 305 RSRSAKLRAGMR 316 RS SAKLR + Sbjct: 303 RSHSAKLRVAEK 314 >gi|91785301|ref|YP_560507.1| S-adenosyl-methyltransferase MraW [Burkholderia xenovorans LB400] gi|122970134|sp|Q13TY4|RSMH_BURXL RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|91689255|gb|ABE32455.1| S-adenosyl-methyltransferase, cell division cytoplasmic protein, MraW [Burkholderia xenovorans LB400] Length = 317 Score = 182 bits (462), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 124/311 (39%), Positives = 184/311 (59%), Gaps = 21/311 (6%) Query: 20 HVPVLLEKVI-ALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQ 75 H VLLE+ + AL+ A G V +D TFG GG+SR K+G + +IA D+DP A++ Q Sbjct: 11 HRTVLLEEAVQALVTRADG-VYVDGTFGRGGHSRLVLEKLGESGRLIAFDKDPLAIATAQ 69 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F + +F+ L+ + ++GV GV+ DLGVSS Q+D +RGFSF+ GP Sbjct: 70 QIT---DPRFGIVHESFASLRTAMAERGVGRVSGVLLDLGVSSPQVDDPERGFSFRADGP 126 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQT 187 LDMRM + G SA+D + +A V++LT ++ GEE+ A +IA A+V RR + P + Sbjct: 127 LDMRMDPTRGESAADWLARATVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLVS 186 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T +L+ ++ V + + PATR+FQA+RI +N E+ EL L +A L+ GG L+V Sbjct: 187 TGELAQIVANVVKTREKGK-DPATRTFQAIRIHINQELAELQVVLEAALSLLEQGGRLVV 245 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA--HPAVFQSITKKVVVPTQEDVAFNRR 305 +SFHSLEDR+VK+F + + AV +P A P+ I +V E VA N R Sbjct: 246 ISFHSLEDRIVKRFMQAHA-STPAVDRRLPIRAVDLPSPPLKIIGRVFASDAE-VAANPR 303 Query: 306 SRSAKLRAGMR 316 +RSA +R R Sbjct: 304 ARSAVMRVAER 314 >gi|323706128|ref|ZP_08117697.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacterium xylanolyticum LX-11] gi|323534572|gb|EGB24354.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacterium xylanolyticum LX-11] Length = 310 Score = 182 bits (462), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 106/304 (34%), Positives = 164/304 (53%), Gaps = 8/304 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77 H VLL++ I L P + +D T G GG+S + +IA+DRD A+ Sbjct: 5 HESVLLQETIEYLEIKPDGIYVDGTLGGGGHSYEILRRLDKGKLIAIDRDMDAIKAASIR 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++D+ + + ++D + G+ DG + DLGVSS Q+D RGFS+ PLD Sbjct: 65 LKDFNNT-TYIHDNYKNIKDILKKCGIESIDGALLDLGVSSYQLDEAQRGFSYMHDAPLD 123 Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM S I+A VVN + ++ +++ GEE A RIA IV+ R+ P +TT +L Sbjct: 124 MRMDKESDITAEYVVNNYSEDEIAKVISDYGEELWAKRIAKFIVEERRRKPIKTTFELVD 183 Query: 194 LIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+K + SK HPA R+FQA+RI VN E++ L + + GG + +++FHS Sbjct: 184 IIKKAIPASKRRTGPHPAKRTFQAIRIEVNEELKGLGDAIADFVDVMNPGGRIAIITFHS 243 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK + +++ + V + ITKK +VP++ ++ N RSRSAKLR Sbjct: 244 LEDRIVKNAYKKLEDPCTCPKNLPCTCGKKPVIKIITKKPIVPSEVEIKVNPRSRSAKLR 303 Query: 313 AGMR 316 + Sbjct: 304 VAEK 307 >gi|168702508|ref|ZP_02734785.1| methyltransferase [Gemmata obscuriglobus UQM 2246] Length = 293 Score = 182 bits (462), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 117/304 (38%), Positives = 166/304 (54%), Gaps = 28/304 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HV VL + +ALL+P P + +D T G G++R + V+ALD+DP ++ + Sbjct: 9 HVSVLPAETLALLDPRPDETWVDCTTGGAGHTRLIAERVGPAGRVLALDQDPTMLALARP 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + L A F QL + + +G VDGV+ DLG SS Q+ RG SF+ GPL Sbjct: 69 LVAGLP--VELVHANFDQLAEVLAARGIAAVDGVLADLGFSSDQLAERARGLSFRDDGPL 126 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMR+ SG +A+D+VN + L + GEE+ + R+A IV RR PF TT DL+ Sbjct: 127 DMRLDPTSGSTAADMVNSLSEGALADVFWEYGEERHSRRVAKKIVARRAERPFATTADLA 186 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 S+++ V ++ I PATR FQALRI VN+E+ L + L +K+GG + ++SFHS Sbjct: 187 SVVRSCV--PRSGSIDPATRVFQALRIAVNDELGSLDRLLAVLPTVVKSGGRVGIISFHS 244 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR VK + V++ +TKK V E+VA N R+RSAKLR Sbjct: 245 LEDRRVKHVLRTE-----------------GVWRPLTKKPVEAGDEEVARNPRARSAKLR 287 Query: 313 AGMR 316 A R Sbjct: 288 AATR 291 >gi|296269378|ref|YP_003652010.1| S-adenosyl-methyltransferase MraW [Thermobispora bispora DSM 43833] gi|296092165|gb|ADG88117.1| S-adenosyl-methyltransferase MraW [Thermobispora bispora DSM 43833] Length = 327 Score = 182 bits (462), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 118/297 (39%), Positives = 176/297 (59%), Gaps = 10/297 (3%) Query: 17 IGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAV 71 + HVPV+L +V+ LL PA P V++DA G GG++ + K ++I +DRDP A+ Sbjct: 14 VNGHVPVMLGRVLELLAPALTGPDPVLVDANVGLGGHAEALLKAHPALHLIGIDRDPTAI 73 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQ 128 + Y E+ +L A +L + G ++G +FDLG+SS QID RGF++ Sbjct: 74 ERSTARLAPYAERVTLVHAVSDELPTILSRAGRPRINGALFDLGLSSPQIDEAARGFAYS 133 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 PLDMRM ++A+DVVN +V +LTRIL GEE+ A+RIA+AI + R +P T Sbjct: 134 YDAPLDMRMDPGQELTAADVVNGYSVAELTRILREYGEERFAARIANAIARERARSPITT 193 Query: 188 TQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T+ L+ L++ + ++ +PA R+FQALRI VN E+ L + L +A AL GG ++ Sbjct: 194 TKRLADLVRDAIPAATRRTGGNPAKRTFQALRIEVNQELAALERALPAALDALAVGGRVV 253 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 V+++HSLEDRLVK+ A RS + +P AH F+ +TK +P E+VA N Sbjct: 254 VLAYHSLEDRLVKRVLAERSTESGPPGLPVPLEAHLPTFRLLTKGAELPDDEEVARN 310 >gi|5834377|gb|AAD53943.1|AF179611_27 conserved hypothetical protein [Zymomonas mobilis subsp. mobilis ZM4] Length = 276 Score = 182 bits (462), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 114/272 (41%), Positives = 162/272 (59%), Gaps = 8/272 (2%) Query: 67 DPFAVSCGQETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDR 123 DP A+ G + YK + L FS + D + K VDG+VFD+GVSSMQID +R Sbjct: 1 DPDAIREGASLVEKYKGRLRLVNDCFSNIGHHLDALDIKTVDGMVFDIGVSSMQIDRPER 60 Query: 124 GFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 GFS Q GPLDMRM+ +G+SA +++N A KD+ +L + GEE+Q+ R+A AIV R +A Sbjct: 61 GFSIQADGPLDMRMAQAGLSAEELLNNAQEKDIADVLYLYGEERQSRRVATAIV--RGTA 118 Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 + L+ +I++++ + ++ PA FQA+RI +N E++EL GL++AE+ LK G Sbjct: 119 FKRRLFRLAKVIRQSLGYRPFDKKDPAAHCFQAIRIHLNRELDELKDGLQTAERFLKTKG 178 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 L VV+FHSLEDR+VK F +G+ V RH VF S + V + ++A Sbjct: 179 CLAVVTFHSLEDRIVKHFMREHAGQTGQVSRHQPVIPQQNPVFFSKPARPVRAGETELAR 238 Query: 303 NRRSRSAKLRAGMRTVERSIEDDSF--VHLPR 332 N R+RSA LRA RT ED S H+PR Sbjct: 239 NPRARSATLRAVYRTETPFSEDISRPDTHIPR 270 >gi|304386665|ref|ZP_07368947.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis ATCC 13091] gi|304339250|gb|EFM05328.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis ATCC 13091] Length = 328 Score = 182 bits (462), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 116/306 (37%), Positives = 171/306 (55%), Gaps = 10/306 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMG--SNVIALDRDPFAVSCGQE 76 H+ VLL + + L V +D TFG GG+SR ++G +I D+DP A++ +E Sbjct: 9 HITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFDKDPQAIAVAEE 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 R K + + F+ Q + G VDG +FDLG+SS QID G RGFSF+ PL Sbjct: 69 LARSDK-RVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGSRGFSFRFDAPL 127 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + G+SA++ + A+ +DL ++ GEE+ + +IA AIV +R +P TT+ L+ Sbjct: 128 DMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRAESPIDTTRKLA 187 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++ + V + + ATR+FQA+RIF+N E+EE+ L LK GG L V++FHS Sbjct: 188 QIVAQNVRTRERGQ-DSATRTFQAIRIFINRELEEVGAVLPQVMCRLKEGGRLAVIAFHS 246 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK+F S R A P I + + P + ++A N R+RSA L Sbjct: 247 LEDRIVKQFVKKYSQHAPLPRWAAVREADLPEPPLKIVGRALKPGEAEIAANPRARSAVL 306 Query: 312 RAGMRT 317 R RT Sbjct: 307 RVAERT 312 >gi|221213285|ref|ZP_03586260.1| S-adenosyl-methyltransferase MraW [Burkholderia multivorans CGD1] gi|221166737|gb|EED99208.1| S-adenosyl-methyltransferase MraW [Burkholderia multivorans CGD1] Length = 313 Score = 182 bits (462), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 118/312 (37%), Positives = 186/312 (59%), Gaps = 21/312 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMG--SNVIALDRDPFAVSCGQE 76 H VLL++ + L P + +D TFG GG+SR+ ++G +IA D+DP A+ Q Sbjct: 7 HRTVLLDEAVESLVTRPDGIYVDGTFGRGGHSRAVLARLGPAGRLIAFDKDPRAIETAQ- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +M D + FS+ +F+ ++D + +G++ GV+ DLGVSS Q+D RGFSF+ GPL Sbjct: 66 SMADAR--FSIVHDSFASMRDALAARGIEKVSGVLLDLGVSSPQVDDPARGFSFRADGPL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTT 188 DMRM + G SA++ + +A++++LT ++ GEE+ A +IA A+V RR + P +T Sbjct: 124 DMRMDPTRGESAAEWLARASLQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDST 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ ++ V + + PATR+FQA+RI VN E+ +L L +A L+ GG L+V+ Sbjct: 184 GELAQIVGHVVKTREKGK-DPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVI 242 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNRR 305 SFHSLEDR+VK+F + + AV +P A S K++ P++ +VA N R Sbjct: 243 SFHSLEDRIVKRFMQAHA-SAPAVDRRLPIRA--VDLPSPPLKIIGRQFPSEAEVAANPR 299 Query: 306 SRSAKLRAGMRT 317 +RSA +R R Sbjct: 300 ARSAVMRIAERV 311 >gi|296160551|ref|ZP_06843367.1| S-adenosyl-methyltransferase MraW [Burkholderia sp. Ch1-1] gi|295889300|gb|EFG69102.1| S-adenosyl-methyltransferase MraW [Burkholderia sp. Ch1-1] Length = 313 Score = 182 bits (462), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 124/311 (39%), Positives = 184/311 (59%), Gaps = 21/311 (6%) Query: 20 HVPVLLEKVI-ALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQ 75 H VLLE+ + AL+ A G V +D TFG GG+SR K+G + +IA D+DP A++ Q Sbjct: 7 HRTVLLEEAVQALVTRADG-VYVDGTFGRGGHSRLVLEKLGESGRLIAFDKDPLAIATAQ 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F + +F+ L+ + ++GV GV+ DLGVSS Q+D +RGFSF+ GP Sbjct: 66 QIT---DPRFGIVHESFASLRTAMAERGVGRVSGVLLDLGVSSPQVDDPERGFSFRADGP 122 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQT 187 LDMRM + G SA+D + +A V++LT ++ GEE+ A +IA A+V RR + P + Sbjct: 123 LDMRMDPTRGESAADWLARATVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLVS 182 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T +L+ ++ V + + PATR+FQA+RI +N E+ EL L +A L+ GG L+V Sbjct: 183 TGELAQIVANVVKTREKGK-DPATRTFQAIRIHINQELAELQVVLEAALSLLEQGGRLVV 241 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA--HPAVFQSITKKVVVPTQEDVAFNRR 305 +SFHSLEDR+VK+F + + AV +P A P+ I +V E VA N R Sbjct: 242 ISFHSLEDRIVKRFMQAHA-STPAVDRRLPIRAVDLPSPPLKIIGRVFASDAE-VAANPR 299 Query: 306 SRSAKLRAGMR 316 +RSA +R R Sbjct: 300 ARSAVMRVAER 310 >gi|83748758|ref|ZP_00945773.1| S-adenosyl-methyltransferase mraW [Ralstonia solanacearum UW551] gi|207721512|ref|YP_002251952.1| s-adenosyl-methyltransferase mraw protein [Ralstonia solanacearum MolK2] gi|207744409|ref|YP_002260801.1| s-adenosyl-methyltransferase mraw protein [Ralstonia solanacearum IPO1609] gi|83724579|gb|EAP71742.1| S-adenosyl-methyltransferase mraW [Ralstonia solanacearum UW551] gi|206586672|emb|CAQ17258.1| s-adenosyl-methyltransferase mraw protein [Ralstonia solanacearum MolK2] gi|206595814|emb|CAQ62741.1| s-adenosyl-methyltransferase mraw protein [Ralstonia solanacearum IPO1609] Length = 319 Score = 182 bits (462), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 120/313 (38%), Positives = 181/313 (57%), Gaps = 21/313 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VL ++ + L + +D TFG GG+SR + G +IA D+DP A++ Sbjct: 11 HQTVLRDEAVDALLWRDDGIYIDGTFGRGGHSRLILERLGPGGRLIAFDKDPAAITEAG- 69 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 T+ D + F++ +F+ L + +G V GV+ DLG+SS QID G RGFSF+ GPL Sbjct: 70 TVEDAR--FAIEHDSFAHLDAALDARGIGRVAGVLLDLGISSPQIDEGARGFSFRMDGPL 127 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTT 188 DMRM + GI+A+ + +A+ +D+ R++ GEE+ A +IA AIV RR + P T Sbjct: 128 DMRMDTTRGITAAQWLAEADERDIARVIRDYGEERFAVQIAKAIVARRSESGTRGPLDRT 187 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L++L+ + V + + PATR+FQALRI VN E+ +L GL++A + L+ GG L+V+ Sbjct: 188 SELAALVAQAVKTREKGQ-DPATRTFQALRIHVNQELADLETGLKAAFERLEQGGRLVVI 246 Query: 249 SFHSLEDRLVKKF---FASRSGKVMAVRHMIPSNAH--PAVFQSITKKVVVPTQEDVAFN 303 SFHSLEDR+VK+F A P AH PA + + V P++ +V+ N Sbjct: 247 SFHSLEDRIVKRFMQALARPEQSAAPEMRRAPLRAHELPAPQLRLLGR-VRPSEAEVSAN 305 Query: 304 RRSRSAKLRAGMR 316 R+RSA +R R Sbjct: 306 PRARSAIMRVAER 318 >gi|88799431|ref|ZP_01115008.1| S-adenosyl-methyltransferase [Reinekea sp. MED297] gi|88777741|gb|EAR08939.1| S-adenosyl-methyltransferase [Reinekea sp. MED297] Length = 315 Score = 182 bits (462), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 121/308 (39%), Positives = 175/308 (56%), Gaps = 25/308 (8%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76 H VLL + + ++ G V +D TFG GG+SR S + +I D+DP A++ E Sbjct: 11 HETVLLHETVEAVDVGSG-VYVDGTFGRGGHSRLLLSRLDADARLIVFDKDPLAIATANE 69 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + ++ Q F++L + G V G++ DLGVSS Q+D +RGFSF+ GP Sbjct: 70 LAAE-DSRVTVVQRGFAELSSVLKQAGLMGQVSGILLDLGVSSPQLDDAERGFSFRADGP 128 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ SG SA+ + + + K+L +L G+E+ + RIA AIV RQ P + T L Sbjct: 129 LDMRMNPESGESAAQWIARVSEKELADVLFQYGDERFSRRIARAIVTARQKQPIERTLQL 188 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +I KT + +++ HPAT+SFQA+RI VN E++EL L ++ ALK GG L V+SFH Sbjct: 189 AEII-KTAHPKWDHKKHPATKSFQAIRIAVNGELDELDAVLSASVGALKPGGRLAVISFH 247 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP-------SNAHPAVFQSITKKVVVPTQEDVAFNR 304 SLEDR VK+F K+ A +P + H V K + + E+VA N Sbjct: 248 SLEDRAVKQFI-----KLQAKGPELPPGLPVRDEDIH--VTMKAVGKAIKASAEEVAVNV 300 Query: 305 RSRSAKLR 312 RSRSA LR Sbjct: 301 RSRSAVLR 308 >gi|284929250|ref|YP_003421772.1| S-adenosyl-methyltransferase MraW [cyanobacterium UCYN-A] gi|284809694|gb|ADB95391.1| S-adenosyl-methyltransferase MraW [cyanobacterium UCYN-A] Length = 298 Score = 182 bits (462), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 125/304 (41%), Positives = 168/304 (55%), Gaps = 31/304 (10%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 H+PVL +++I L PG + LDAT G GG+S NV I +D D A+ + Sbjct: 16 HIPVLSQELIEGLAIKPGGIYLDATLGRGGHSNLILSTFPNVQVIGIDLDDDAILNTKTN 75 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDK--GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 M +Q FQ +DY P K DG++ DLGVSS Q+D +RGFSF+ LDM Sbjct: 76 MSSSMKQ--RFQTWAGNFKDY-PGKIEEFDGIIADLGVSSPQLDNPERGFSFRHEASLDM 132 Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM+ ++A +++N + L I GEEK++ IA +V+ R PF TT DL+S Sbjct: 133 RMNREQSLTAEEIINHWSEITLANIFYQYGEEKRSRSIARYLVENR---PFFTTTDLASA 189 Query: 195 IQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 I K V+ K RIHPATR FQALRI VN+E+ L + L+ + LK G + ++SFHS Sbjct: 190 ISK-VFPPKYRYGRIHPATRVFQALRIIVNDELTSLEKFLQQSPSWLKPQGNIGIISFHS 248 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK F R ++ V ITKK ++P QE+ NRRSRSAKLR Sbjct: 249 LEDRIVKHTF--RDSSLLDV---------------ITKKPIIPKQEEKYNNRRSRSAKLR 291 Query: 313 AGMR 316 R Sbjct: 292 FAKR 295 >gi|329667562|gb|AEB93510.1| S-adenosyl-methyltransferase MraW [Lactobacillus johnsonii DPC 6026] Length = 322 Score = 182 bits (462), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 113/307 (36%), Positives = 177/307 (57%), Gaps = 15/307 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77 H VLL + I LNP G + +DATFG GG++R VI D+D +A+S +E+ Sbjct: 12 HKSVLLHETIDNLNPKDGGLYVDATFGGGGHARYLLSKLNKGTVIGFDQDEYAISMAKES 71 Query: 78 MRDY-----KEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + + L F L++ + + G+DG+ +DLGVSS Q D +RGFS++ Sbjct: 72 FAKELQVGAEPRLMLVHDNFCHLKENLVELGISDGIDGIYYDLGVSSPQFDQPERGFSYR 131 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 LDMRM S + A +VN + K+L+ +L G+EK + +IA IV RR+ P T Sbjct: 132 FDARLDMRMDQSQELDAYTIVNTWSQKELSDVLYKYGDEKFSRQIARKIVDRRKEKPIVT 191 Query: 188 TQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T DL +I+ + +++ + HPA +SFQA+R+ VNNE+ L + L A K LK GG + Sbjct: 192 TFDLVDVIKDAIPAYARRSGGHPAKKSFQAIRVAVNNELGVLQESLEEAIKLLKPGGRIS 251 Query: 247 VVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V++F S ED++VKK F S K+ M+P+++ P + + I++K ++ + +++ N R Sbjct: 252 VITFQSHEDKIVKKIFKKYSEVKIPRGMPMVPADSKPTL-RLISRKPIMASSDELEENNR 310 Query: 306 SRSAKLR 312 S SAKLR Sbjct: 311 SHSAKLR 317 >gi|225619046|ref|YP_002720272.1| S-adenosyl-methyltransferase MraW [Brachyspira hyodysenteriae WA1] gi|263445852|sp|C0QWF7|RSMH_BRAHW RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|225213865|gb|ACN82599.1| S-adenosyl-methyltransferase MraW [Brachyspira hyodysenteriae WA1] Length = 300 Score = 182 bits (462), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 98/302 (32%), Positives = 173/302 (57%), Gaps = 16/302 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H PV+L++V++ + P K+ +DAT G GG++++ + V + +RD + ++ ++ Sbjct: 11 HTPVMLKEVLSFI-PENAKIAVDATLGEGGHTKAMLDLNLEVHSFERDSAILEIAKKRLK 69 Query: 80 DYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 +Y ++F + T+ ++ + + D VD +++DLGVS +RGFSF+ + LDMR Sbjct: 70 NY-DKFHYYNNTYDKMIEELDDSIIGNVDFMLYDLGVSLFHFKKAERGFSFKDNVRLDMR 128 Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI- 195 + + SA DV+N + ++L R+L GE A ++A+ IVK R +T+++L ++I Sbjct: 129 LGLNEKSAYDVINGYSEEELERVLRDYGEISNARKMANVIVKERNRRKIETSRELENIIF 188 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 T + +IHPAT FQA+RI VN+E+ L + + + LK G+++V+S+HSLED Sbjct: 189 HNTDKSQRYGKIHPATLVFQAIRIEVNDELNILEKSISNIPSILKQNGVVVVMSYHSLED 248 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 R++KKFF + +F+ + KV +PT E++ N SRSAK+R Sbjct: 249 RIIKKFFKENE----------KTKNKDGIFKLLNNKVKLPTNEEIKSNPASRSAKMRIAQ 298 Query: 316 RT 317 + Sbjct: 299 KV 300 >gi|198282533|ref|YP_002218854.1| S-adenosyl-methyltransferase MraW [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665162|ref|YP_002424723.1| S-adenosyl-methyltransferase MraW [Acidithiobacillus ferrooxidans ATCC 23270] gi|263433385|sp|B5ELD1|RSMH_ACIF5 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263433699|sp|B7J3W0|RSMH_ACIF2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|198247054|gb|ACH82647.1| S-adenosyl-methyltransferase MraW [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517375|gb|ACK77961.1| S-adenosyl-methyltransferase MraW [Acidithiobacillus ferrooxidans ATCC 23270] Length = 321 Score = 182 bits (462), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 125/309 (40%), Positives = 172/309 (55%), Gaps = 14/309 (4%) Query: 20 HVPVLLEKVIALLNPA--PGKVI--LDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 HV VLL + I L PA G + +DAT G GG+S + ++ LDRDP A++ Sbjct: 11 HVAVLLAETIVALRPALHTGAAVRCVDATGGRGGHSAALLAELGAADTLLILDRDPSAIA 70 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 + + + QA FSQL + + + VD ++ DLGVSS Q+D RGFSF + Sbjct: 71 ALRARFAQDSRVY-IRQARFSQLAEVLAALEWERVDAILADLGVSSPQLDEAARGFSFLR 129 Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM SA++ + A D+TR+L GEE+ A IA AI++ R+ AP T Sbjct: 130 DGPLDMRMDPGADRSAAEWLATATEADMTRVLREYGEERFARPIARAILRAREQAPITRT 189 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ LI + + + + HPATRSFQ +RIF+N E+EEL L A AL+AGG L V+ Sbjct: 190 LQLAELIAQVLPRHETGQ-HPATRSFQGIRIFINRELEELEAFLPQAMNALRAGGRLAVI 248 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDRLVK+FF + ++ A + S P + K + +E N RSRS Sbjct: 249 SFHSLEDRLVKRFFRADDYRISADVPLRASELPPLPWHPAGKALRAGPRE-TRDNPRSRS 307 Query: 309 AKLRAGMRT 317 A LR R+ Sbjct: 308 AVLRVAERS 316 >gi|322387149|ref|ZP_08060759.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus infantis ATCC 700779] gi|321141678|gb|EFX37173.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus infantis ATCC 700779] Length = 316 Score = 182 bits (462), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 112/309 (36%), Positives = 179/309 (57%), Gaps = 14/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 HV V+L + I +L+ P + +DAT G G+S S ++ A D+D A+ Q+ Sbjct: 7 HVTVMLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66 Query: 77 TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y E+ + + F L+D + D GV DG+ +DLGVSS Q+D +RGFS++K+ Sbjct: 67 RLAPYIEKGMVTFIKDNFRHLKDRLHDLGVTEIDGICYDLGVSSPQLDQRERGFSYKKNA 126 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ + ++A +VVN + DL RI GE+K + +IA I + R+ P +TT + Sbjct: 127 PLDMRMNQEASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQAREQKPIETTTE 186 Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ +I K+ +K + HPA + FQA+RI VN+E+ + ++ A L G + V+ Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVI 245 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F S KV IP + P + + +++K ++P++E++ N RS Sbjct: 246 TFHSLEDRLTKQLFKEVSTVKVPKGLPFIPDDLKPKM-ELVSRKPILPSKEELEANNRSH 304 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 305 SAKLRVARK 313 >gi|317121700|ref|YP_004101703.1| S-adenosyl-methyltransferase MraW [Thermaerobacter marianensis DSM 12885] gi|315591680|gb|ADU50976.1| S-adenosyl-methyltransferase MraW [Thermaerobacter marianensis DSM 12885] Length = 342 Score = 182 bits (461), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 123/302 (40%), Positives = 175/302 (57%), Gaps = 18/302 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 HVPVLL +V+A L P PG +D T GAGG++ + ++ +DRDP A++ Sbjct: 46 HVPVLLREVVAYLAPRPGGRYVDGTVGAGGHAAAVLAAAGGEAELLGIDRDPAALALAAR 105 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + + L F L+ ++ D G VDG++ DLGVSSMQ+D RGFS+Q+ GPL Sbjct: 106 RLAPFGARVRLVHGNFRGLEQHLEDAGWDAVDGILLDLGVSSMQLDDPSRGFSYQEEGPL 165 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S ++A+D+VN A L R + GEE+ A RIA IV R+ P TT L Sbjct: 166 DMRMDPSQPVTAADLVNTAGRDQLARWIAEYGEERWAGRIADFIVAARRRRPITTTTQLV 225 Query: 193 SLIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + R HPA R+FQALRI VN E++ L + L+ A + L+ GG ++V++FH Sbjct: 226 EIIKAAIPARARRRGGHPARRTFQALRIAVNGELDGLEEFLQQAARRLRPGGRMVVIAFH 285 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR VK+ F R + + A F+ +T++ V P +E+ N RSRSAKL Sbjct: 286 SLEDRAVKRAF----------RALAAPDGGAAPFRLLTRRPVTPGEEEAQANPRSRSAKL 335 Query: 312 RA 313 RA Sbjct: 336 RA 337 >gi|306830621|ref|ZP_07463786.1| S-adenosyl-methyltransferase MraW [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304427129|gb|EFM30236.1| S-adenosyl-methyltransferase MraW [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 324 Score = 182 bits (461), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 116/323 (35%), Positives = 182/323 (56%), Gaps = 19/323 (5%) Query: 6 CKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGS--NVI 62 K M++ HH + VLL + + +L+ P V +DAT G G+S K+G+ ++ Sbjct: 6 MKGMTTDFHH-----ITVLLHETVDMLDIKPDGVYVDATLGGAGHSEYLLSKLGTTGHLY 60 Query: 63 ALDRDPFAVSCGQETMRDYKE--QFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQ 117 A D+D A+ Q ++DY E Q + + F L + GV DG+++DLGVSS Q Sbjct: 61 AFDQDQTAIDNAQIRLKDYIEKGQVTFIKDNFRNLASNLASHGVTEIDGILYDLGVSSPQ 120 Query: 118 IDCGDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 +D +RGFS++K PLDMRM+ +SA +VVN + DL RI GE+K + +IA I Sbjct: 121 LDERERGFSYKKDAPLDMRMNRDQDLSAYNVVNTYDYHDLVRIFFKYGEDKFSKQIARKI 180 Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRS 234 + R+ P +TT +L+ +I K+ +K + HPA + FQA+RI VN+E+ + ++ Sbjct: 181 EQARKVKPIETTTELAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQ 239 Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVV 293 A + L G + V++FHSLEDRL K+ F S V IP + P + + +K + Sbjct: 240 AIELLAVDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPEDMQPKL-ALVNRKPI 298 Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316 +P++E++ N RS SAKLR + Sbjct: 299 LPSEEELEVNNRSHSAKLRVARK 321 >gi|319639028|ref|ZP_07993786.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Neisseria mucosa C102] gi|317399932|gb|EFV80595.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Neisseria mucosa C102] Length = 320 Score = 182 bits (461), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 114/306 (37%), Positives = 169/306 (55%), Gaps = 10/306 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQE 76 HV VLL + + L + +D TFG GG+SR ++G ++ D+DP A++ E Sbjct: 9 HVTVLLHEAVDALAIREDGIYVDGTFGRGGHSRLILSRLGEQGRLVVFDKDPEAIAVANE 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 K + S+ F Q + + G+D G +FDLG+SS QID G RGFSF+ PL Sbjct: 69 LAAQDK-RVSVVHNGFETFQTALDELGIDKIDGALFDLGISSPQIDDGSRGFSFRFDAPL 127 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + G+SA++ + A+ +DL ++ GEE+ + +IA AIV +R+ +P TT+ L+ Sbjct: 128 DMRMDPTRGMSAAEWIATASEQDLHEVIKNYGEERFSRQIARAIVAQREESPIDTTRKLA 187 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 L+ + V + + PATR+FQA+RIF+N E+EE+ L LK GG L V++FHS Sbjct: 188 QLVAQNVRTRERGQ-DPATRTFQAVRIFINRELEEVEAVLPQVAGRLKEGGRLAVIAFHS 246 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK+F S R + A P K + P + N R+RSA L Sbjct: 247 LEDRIVKQFIKKYSQHAPLPRWAVVKEADLPQPPLKAVGKAIKPGSAETEANPRARSAVL 306 Query: 312 RAGMRT 317 R R+ Sbjct: 307 RVAERS 312 >gi|229104481|ref|ZP_04235148.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus Rock3-28] gi|228678923|gb|EEL33133.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus Rock3-28] Length = 310 Score = 182 bits (461), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 111/302 (36%), Positives = 168/302 (55%), Gaps = 9/302 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HV VLL++ + L+ P +D T G GG+S G +IA D+D A+ +E Sbjct: 4 HVTVLLKETVDGLDIKPDGTYVDCTLGGGGHSSYLLSQLTDGGKLIAFDQDEIAIQNAKE 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 Y EQF ++ F L + + + G VDG++FDLGVSS Q+D +RGFS+ PL Sbjct: 64 KFSSYGEQFITVKSNFRYLSEKLQELGITEVDGILFDLGVSSPQLDTPERGFSYHHDAPL 123 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM ++A DV+N + + L RI GEEK + +IA I R++ +TT +L Sbjct: 124 DMRMDQDAPLTAYDVINSWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTGELV 183 Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 LI++ + ++ HPA R FQA+RI VN+E++ + L SA + +K GG + V++FH Sbjct: 184 ELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRVSVITFH 243 Query: 252 SLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+ K F S + I + + IT+K ++P+ ++ N R+RSAK Sbjct: 244 SLEDRICKTTFKRNSTTPPLPPGLPIIPDEFKPKLKLITRKPILPSDIELEENNRARSAK 303 Query: 311 LR 312 LR Sbjct: 304 LR 305 >gi|225077130|ref|ZP_03720329.1| hypothetical protein NEIFLAOT_02185 [Neisseria flavescens NRL30031/H210] gi|224951541|gb|EEG32750.1| hypothetical protein NEIFLAOT_02185 [Neisseria flavescens NRL30031/H210] Length = 320 Score = 182 bits (461), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 114/306 (37%), Positives = 168/306 (54%), Gaps = 10/306 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQE 76 HV VLL + + L + +D TFG GG+SR ++G ++ D+DP A++ E Sbjct: 9 HVTVLLHEAVDALAIREDGIYVDGTFGRGGHSRLILSRLGEQGRLVVFDKDPEAIAVANE 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 K + S+ F Q + + G+D G +FDLG+SS QID G RGFSF+ PL Sbjct: 69 LAAQDK-RVSVVHNGFETFQTALDELGIDKIDGALFDLGISSPQIDDGSRGFSFRFDAPL 127 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + G+SA++ + A+ +DL ++ GEE+ + +IA AIV +R+ +P TT L+ Sbjct: 128 DMRMDPTRGMSAAEWIATASEQDLHEVIKNYGEERFSRQIARAIVAQREESPIDTTHKLA 187 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 L+ + V + + PATR+FQA+RIF+N E+EE+ L LK GG L V++FHS Sbjct: 188 QLVAQNVRTRERGQ-DPATRTFQAVRIFINRELEEVEAVLPQVAGRLKEGGRLAVIAFHS 246 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK+F S R + A P K + P + N R+RSA L Sbjct: 247 LEDRIVKQFIKKYSQHAPLPRWAVVKEADLPQPPLKAVGKAIKPGSTETEANPRARSAVL 306 Query: 312 RAGMRT 317 R R+ Sbjct: 307 RVAERS 312 >gi|220933941|ref|YP_002512840.1| S-adenosyl-methyltransferase MraW [Thioalkalivibrio sp. HL-EbGR7] gi|262825935|sp|B8GMM1|RSMH_THISH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|219995251|gb|ACL71853.1| S-adenosyl-methyltransferase MraW [Thioalkalivibrio sp. HL-EbGR7] Length = 314 Score = 182 bits (461), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 123/306 (40%), Positives = 174/306 (56%), Gaps = 11/306 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYS-RSFCKMGSN--VIALDRDPFAVSCGQE 76 H VLLE+ + L P + LD TFG GG+S R ++G + +IALDRDP A + Sbjct: 9 HRAVLLEEAVEALAVRPDGIYLDGTFGRGGHSGRILERLGPDGRLIALDRDPEAEAEAAR 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 D E+F + +F LQ G+ DGV+ DLGVSS Q+D +RGFSF GP Sbjct: 69 RFGD-DERFHFERCSFEMLQQVTDRLGISGRLDGVLLDLGVSSPQLDTPERGFSFMSDGP 127 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM SG SA+ + +AN ++ +L GEE+ A RIA IV+ RQ P + T+ L Sbjct: 128 LDMRMDPESGESAAAWLARANEDEIAWVLKEYGEERFARRIARRIVETRQEMPLERTRQL 187 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI + V F + ++ HPATRSFQA+RI VN+E+E L + L L GG L V+SFH Sbjct: 188 AELIAEAVPFKERHK-HPATRSFQAIRIRVNDELETLPRCLEQIPALLAPGGRLAVISFH 246 Query: 252 SLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK+F ++ G+ + + +A + + + + ++ N R+RSA Sbjct: 247 SLEDRMVKRFLRDQAEGERLPRGLPVQGDARRGQTLRLVGRAIRAGEAELDQNPRARSAV 306 Query: 311 LRAGMR 316 LR R Sbjct: 307 LRVAER 312 >gi|330815435|ref|YP_004359140.1| S-adenosyl-methyltransferase MraW [Burkholderia gladioli BSR3] gi|327367828|gb|AEA59184.1| S-adenosyl-methyltransferase MraW [Burkholderia gladioli BSR3] Length = 313 Score = 182 bits (461), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 120/311 (38%), Positives = 180/311 (57%), Gaps = 21/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VLL++ + L P + +D TFG GG+SR G +IA D+DP A+ Sbjct: 7 HRTVLLDEAVDALVTRPDGIYVDGTFGRGGHSRLVLDRLAEGGRLIAFDKDPLAIETAS- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 R +FS+ +F+ L + ++GV GV+ DLGVSS QID +RGFSF+ +GPL Sbjct: 66 --RVGDTRFSIVHDSFASLGGALAERGVGRVTGVLLDLGVSSPQIDDPERGFSFRANGPL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTT 188 DMRM + G SA+D + +A++++LT ++ GEE+ A +IA A+V RR + P +T Sbjct: 124 DMRMDTTRGESAADWLARASLQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDST 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ ++ V + + PATR+FQA+RI VN E+ +L L SA +L+ GG L+V+ Sbjct: 184 GELAQIVGHAVKTREKGK-DPATRTFQAIRIHVNQELADLQVVLESALSSLEQGGRLVVI 242 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNRR 305 SFHSLEDR+VK+F + + AV +P A S K++ P + +VA N R Sbjct: 243 SFHSLEDRIVKRFMQAHA-SAPAVDRRLPIRA--VDLPSPPLKLLGRKFPGEAEVAANPR 299 Query: 306 SRSAKLRAGMR 316 +RSA +R R Sbjct: 300 ARSAVMRIAER 310 >gi|262037275|ref|ZP_06010755.1| S-adenosyl-methyltransferase MraW [Leptotrichia goodfellowii F0264] gi|261748703|gb|EEY36062.1| S-adenosyl-methyltransferase MraW [Leptotrichia goodfellowii F0264] Length = 307 Score = 182 bits (461), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 107/306 (34%), Positives = 176/306 (57%), Gaps = 10/306 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H PVL ++V+ + + +D T G GG++ K S+ VIA+D+D A++ ++ Sbjct: 4 HKPVLFDEVMENIIKKEKAIYVDCTLGGGGHTEGILKSSSDDSKVIAIDQDIEAINFAKK 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + +Y + +FQ F + V G VD ++ D+GVSS Q+D +RGFS++ L Sbjct: 64 RLENYGNKMEIFQDNFRNIDTVVYFAGFNKVDRILMDIGVSSNQLDNIERGFSYKYEAKL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +SA DVVN+ K++ I+ GEE ++ +IA IV+ R++ +TT +LS Sbjct: 124 DMRMNKELSVSAYDVVNKFAEKEIADIIYKYGEEPKSRKIAKNIVEYRKNKNIETTVELS 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++ K++ K+ + HP+ R+FQA+RIFVN E+E L + L A L GG L+V++FHS Sbjct: 184 DIVIKSI--GKSMKKHPSKRTFQAIRIFVNKELEVLEEALDKAVNLLNKGGKLLVITFHS 241 Query: 253 LEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK+ F + + + ++ + +TKK + E++ N R+ SAKL Sbjct: 242 LEDRMVKEKFRKYENPCVCPPELPVCVCKKESLGKIVTKKPITAKNEELEINNRAHSAKL 301 Query: 312 RAGMRT 317 R R+ Sbjct: 302 RIFERS 307 >gi|261367518|ref|ZP_05980401.1| S-adenosyl-methyltransferase MraW [Subdoligranulum variabile DSM 15176] gi|282570299|gb|EFB75834.1| S-adenosyl-methyltransferase MraW [Subdoligranulum variabile DSM 15176] Length = 307 Score = 182 bits (461), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 116/300 (38%), Positives = 165/300 (55%), Gaps = 9/300 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77 H+PVLL+ + L P + LD T G G+S K +I+LD+DP AV+ E Sbjct: 5 HIPVLLQPCLDGLAIDPTGIYLDGTAGGAGHSMQIAKRLTTGRLISLDQDPDAVAVATER 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++ Q + QA F + + V+G + DLGVSS Q+D RGFS+ PLD Sbjct: 65 LKGLPAQ--VVQANFRDAARVLAELSIPAVNGALLDLGVSSHQLDDAARGFSYHADAPLD 122 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRMS G +A+D+VN + ++LTRIL GEE A +IA IV R P TT L+ L Sbjct: 123 MRMSQQGPTAADLVNTLDREELTRILRDYGEEPYAWQIAGKIVATRAEQPITTTLQLADL 182 Query: 195 IQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 + V ++ + +PA R+FQA+RI VN+E++ L +GL + L GG L V++FHSL Sbjct: 183 VASAVPPAERRKAKNPARRTFQAIRIAVNSELDVLNEGLDAIFNCLAPGGRLCVITFHSL 242 Query: 254 EDRLVKKFFASRSGKVMA-VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 EDRLVK F + + I + + IT+K + E++ NRR+RSAKLR Sbjct: 243 EDRLVKNKFRRWAQRCTCPPEQPICTCGGVPKAKLITRKPIEADAEELEHNRRARSAKLR 302 >gi|153814616|ref|ZP_01967284.1| hypothetical protein RUMTOR_00830 [Ruminococcus torques ATCC 27756] gi|145848110|gb|EDK25028.1| hypothetical protein RUMTOR_00830 [Ruminococcus torques ATCC 27756] Length = 311 Score = 182 bits (461), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 108/304 (35%), Positives = 173/304 (56%), Gaps = 11/304 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQ 75 +HV VLL + + LN V +DAT G GG++ C+ +GS I +D+D A+ Sbjct: 4 EHVSVLLNETVDGLNVKLDGVYVDATLGGGGHAYEVCRRLGSKGRFIGIDQDADAIKAAG 63 Query: 76 ETMRDYKEQFSLFQATF----SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E ++ + E+ ++ ++ + QLQ+ DK VDG+V DLGVSS Q+D +RGFS++ Sbjct: 64 ERLKGFGEKVTIIRSNYRDMKPQLQNIGVDK-VDGIVIDLGVSSYQLDTAERGFSYRVDA 122 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM ++A D+VN+ + +L R++ GE+K A IA IV R+ P +TT Sbjct: 123 PLDMRMDQRQKMTARDIVNEYSESELYRVIRDYGEDKFAKNIAKHIVAERRKNPIETTGQ 182 Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I + + HP+ R+FQA+RI +N+E++ L + L + L GG + +++ Sbjct: 183 LNEIISHAIPMKFRKTSGHPSKRTFQAIRIELNHELDVLRESLDDMIEMLNPGGRICIIT 242 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK F H + + + IT+K ++P++ + N RS+S Sbjct: 243 FHSLEDRIVKSAFRKNENPCTCPSHFPVCVCGKISKGKVITRKPILPSEAETESNSRSKS 302 Query: 309 AKLR 312 AKLR Sbjct: 303 AKLR 306 >gi|302877570|ref|YP_003846134.1| S-adenosyl-methyltransferase MraW [Gallionella capsiferriformans ES-2] gi|302580359|gb|ADL54370.1| S-adenosyl-methyltransferase MraW [Gallionella capsiferriformans ES-2] Length = 311 Score = 182 bits (461), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 119/306 (38%), Positives = 176/306 (57%), Gaps = 12/306 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76 H VLL + + L P + LD TFG GG+S + +G+N +IALD+D AVS G E Sbjct: 7 HTTVLLAEAVEALAIKPDGIYLDCTFGRGGHSALILQQLGANGRLIALDKDMTAVSHGLE 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +F + + F+ L + + + GV DG++ DLGVSS Q+D RGFSF+ PL Sbjct: 67 WQ---DARFKMVHSGFTHLAEVLRELGVERVDGILLDLGVSSPQLDEAARGFSFRFDAPL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S G +A+ + A+ LT ++ GEE+ A +IA AI+ R+ P QTT L Sbjct: 124 DMRMDNSRGPTAAQWLETADEGLLTEVIRDYGEERFAKQIARAIIVAREIQPIQTTGQLV 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 L+ KTV + + +PATR+FQA+RI++N E+EEL Q L LK GG L V+SFHS Sbjct: 184 ELVGKTVRTRETGK-NPATRTFQAIRIYLNQELEELKQVLPQCVTHLKPGGRLAVISFHS 242 Query: 253 LEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK F + R++ I ++ P ++ + + ++++ N R+RSA + Sbjct: 243 LEDRMVKHFIRDMNDADKLPRNVPIRASEVPKGKLNLIGRAIKAGKDELNSNPRARSAVM 302 Query: 312 RAGMRT 317 R R+ Sbjct: 303 RVAERS 308 >gi|304404001|ref|ZP_07385663.1| S-adenosyl-methyltransferase MraW [Paenibacillus curdlanolyticus YK9] gi|304346979|gb|EFM12811.1| S-adenosyl-methyltransferase MraW [Paenibacillus curdlanolyticus YK9] Length = 317 Score = 182 bits (461), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 114/309 (36%), Positives = 169/309 (54%), Gaps = 16/309 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HV VL+E+ I L P + +D T G G+S G +IA D+D +A + Sbjct: 4 HVTVLMEEAIDGLAVKPDGIYVDCTLGGAGHSSGIVSRLGGGGRLIAFDQDDWAHDNARI 63 Query: 77 TMRDYKEQFSLFQATFSQLQ------DYVPDKG----VDGVVFDLGVSSMQIDCGDRGFS 126 + ++ +L ++ F L+ + VP K VDG++FDLGVSS Q+D +RGFS Sbjct: 64 RLASSMDKVTLIKSNFRYLEQRLLECEGVPQKDGIPQVDGILFDLGVSSPQLDEAERGFS 123 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 + PLDMRM ++A D+VN + +D+ RIL GEEK A +IA I R +AP Sbjct: 124 YNHDAPLDMRMDRDIALTAGDIVNTWDERDIARILMEYGEEKFARKIAREIGAARANAPI 183 Query: 186 QTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 +TT +L LI+ + ++ HPA R+FQALRI VN+E++ L A + LK GG Sbjct: 184 ETTGELVELIKAGIPAAARRTGGHPAKRTFQALRIAVNDELDAEEDALEQAIRCLKPGGR 243 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFN 303 V++FHSLEDR+ K+ FA K + + + +K +VP++E++ N Sbjct: 244 ASVITFHSLEDRICKQTFAKYLEKCSCPPDFPLCVCGGQGALKLVNRKPIVPSEEELEAN 303 Query: 304 RRSRSAKLR 312 R+RSAKLR Sbjct: 304 PRARSAKLR 312 >gi|302518535|ref|ZP_07270877.1| LOW QUALITY PROTEIN: MraW methylase [Streptomyces sp. SPB78] gi|302427430|gb|EFK99245.1| LOW QUALITY PROTEIN: MraW methylase [Streptomyces sp. SPB78] Length = 293 Score = 182 bits (461), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 102/247 (41%), Positives = 149/247 (60%), Gaps = 10/247 (4%) Query: 18 GDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVS 72 G HVPV+L + + LL PA PG V++D T G GG+S + + ++ALDRD A+ Sbjct: 29 GRHVPVMLRRCLDLLGPALAEPGAVVVDCTLGLGGHSEALLSTFPAARLVALDRDKEALR 88 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK 129 E + + E+ L A + +L D + G V G++FDLGVSSMQ+D DRGF++ + Sbjct: 89 LAGERLAPFGERAMLAHAVYDELPDVLDRLGIPRVQGILFDLGVSSMQLDEADRGFAYAQ 148 Query: 130 SGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM +G+SA++V+N +L RIL GEEKQA RI A+V+ R+ PF + Sbjct: 149 DAPLDMRMDQTAGLSAAEVLNTYPPGELVRILRTYGEEKQARRIVSAVVREREKEPFARS 208 Query: 189 QDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 L LI++ + +K +PA R+FQALRI VN E+ L + + +A L GG + V Sbjct: 209 ARLVELIREALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVNTLAVGGRIAV 268 Query: 248 VSFHSLE 254 +++HSLE Sbjct: 269 LAYHSLE 275 >gi|160915591|ref|ZP_02077802.1| hypothetical protein EUBDOL_01601 [Eubacterium dolichum DSM 3991] gi|158432711|gb|EDP11000.1| hypothetical protein EUBDOL_01601 [Eubacterium dolichum DSM 3991] Length = 311 Score = 182 bits (461), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 114/302 (37%), Positives = 170/302 (56%), Gaps = 9/302 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77 H VLL + + L + +D T G GG+S + ++ A DRD A+ +E Sbjct: 4 HYSVLLSECLEGLAIRADGIYVDGTLGRGGHSAQILQRIPKGHLYAFDRDETAIKESKER 63 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + F+L FS L++ + ++G+ DG++ DLGVSS Q D G+RGFS++ PLD Sbjct: 64 LLSIASNFTLIHNQFSMLKEELSNRGIYQIDGMLLDLGVSSPQFDDGERGFSYRYDAPLD 123 Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM S +A DVVN + +L RI GEEK A +IA I K+R P TT +L Sbjct: 124 MRMDQSQQKNAYDVVNSYDYHELVRIFYQYGEEKFAKQIAKNIEKQRAIKPIATTFELVE 183 Query: 194 LIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ ++ N + HPA + FQA+RI VN+E++E+ L+ A L GG L V+SF S Sbjct: 184 VIKASLPAKVLNKKGHPAKKVFQAIRIEVNDELKEIETVLQDAMDMLAVGGRLCVISFQS 243 Query: 253 LEDRLVKKFFASRS--GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 LEDR+VK+ F RS KV M+P + ++ + +K ++ ++E++ N RS SAK Sbjct: 244 LEDRIVKEAFHERSTPKKVDKRIPMLPQDIETVDYRLVNRKPIIASEEELEENNRSHSAK 303 Query: 311 LR 312 LR Sbjct: 304 LR 305 >gi|325288822|ref|YP_004265003.1| Ribosomal RNA small subunit methyltransferase H [Syntrophobotulus glycolicus DSM 8271] gi|324964223|gb|ADY55002.1| Ribosomal RNA small subunit methyltransferase H [Syntrophobotulus glycolicus DSM 8271] Length = 310 Score = 182 bits (461), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 121/304 (39%), Positives = 177/304 (58%), Gaps = 12/304 (3%) Query: 19 DHVPVLL-EKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCG 74 +H VLL E V ++L A G + D TFG GG+SR + S+ +IA D+D A Sbjct: 4 EHTSVLLKETVDSVLTKADGTYV-DCTFGGGGHSRLLLEKLSDQAKLIAFDQDEKAYLNA 62 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + K + F+ F +++ + +G V G++FDLGVSS Q+D +RGFS++ Sbjct: 63 RCRFAGDK-RVIFFRRNFVHMENTLDTEGLLPVTGIMFDLGVSSPQLDEAERGFSYRHDA 121 Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S SA+++VN + +LTRI+ GEEK ASRI+ IV+ R+ +TT Sbjct: 122 PLDMRMDRSAEFSAAELVNGWDEAELTRIIRAYGEEKWASRISKFIVEARKEQEIKTTGR 181 Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I+ V ++ HPA R+FQALRI VN E++ LA+ L A + L +GG L V++ Sbjct: 182 LVEIIKAAVPAGARKEGPHPAKRTFQALRIAVNRELDVLAEALDQALRCLDSGGRLAVIT 241 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR VK+ G+ + + + A + IT+K V+P+ E++ N RSRS Sbjct: 242 FHSLEDRTVKEKILEWLGRCTCPQGFPVCTCGARAQVKQITRKPVIPSNEEIENNPRSRS 301 Query: 309 AKLR 312 AKLR Sbjct: 302 AKLR 305 >gi|171316199|ref|ZP_02905422.1| S-adenosyl-methyltransferase MraW [Burkholderia ambifaria MEX-5] gi|171098613|gb|EDT43410.1| S-adenosyl-methyltransferase MraW [Burkholderia ambifaria MEX-5] Length = 313 Score = 181 bits (460), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 117/312 (37%), Positives = 181/312 (58%), Gaps = 21/312 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VLL++ + L P + +D TFG GG+SR+ +IA D+DP A+ Q Sbjct: 7 HRTVLLDEAVESLVTRPDGIYVDGTFGRGGHSRAVLARLAEAGRLIAFDKDPRAIETAQ- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 R +FS+ +F+ ++D + +G++ GV+ DLGVSS Q+D RGFSF+ GPL Sbjct: 66 --RIEDARFSIVHDSFASMRDALAARGIEKVSGVLLDLGVSSPQVDDPARGFSFRADGPL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTT 188 DMRM + G SA++ + +A+V++LT ++ GEE+ A +IA A+V RR + P TT Sbjct: 124 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDTT 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ ++ V + + PATR+FQA+RI VN E+ +L L +A L+ GG L+V+ Sbjct: 184 GELAQIVGHVVKTREKGK-DPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVI 242 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNRR 305 SFHSLEDR+VK+F + + AV +P A S + K++ P++ +V N R Sbjct: 243 SFHSLEDRIVKRFMQAHA-SAPAVDRRLPIRA--VDLPSPSLKIISRQFPSEAEVVANPR 299 Query: 306 SRSAKLRAGMRT 317 +RSA +R R Sbjct: 300 ARSAVMRIAERV 311 >gi|297583942|ref|YP_003699722.1| S-adenosyl-methyltransferase MraW [Bacillus selenitireducens MLS10] gi|297142399|gb|ADH99156.1| S-adenosyl-methyltransferase MraW [Bacillus selenitireducens MLS10] Length = 317 Score = 181 bits (460), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 112/304 (36%), Positives = 172/304 (56%), Gaps = 11/304 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYS-RSFCKMGSN--VIALDRDPFAVSCGQ 75 +H VL E+ + L PG V +D T G GG+S R ++G + +IA D+D A++ + Sbjct: 3 EHDTVLREETVEGLAIRPGGVYVDCTLGGGGHSERILQELGEDGKLIAFDQDESAIAHAK 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E ++ Y ++ + + F L++ + G VDG++FDLGVSS Q D +RGFS++ P Sbjct: 63 ERLKPYGDRLHIVKRNFRFLKEELEKLGYREVDGIIFDLGVSSPQFDVPERGFSYRFDAP 122 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S ++A V+N+ + +DL +I GEEK A IA I K R++ P +TT +L Sbjct: 123 LDMRMDQTSELTAHKVINEWSFEDLMKIFSRYGEEKFAKYIARKIEKYRETKPVETTFEL 182 Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+ + ++ HPA R+FQA+RI VN+E+ + L A GG + V++F Sbjct: 183 VEIIKDAIPAPARRKGGHPAKRTFQAIRIAVNDELGVFEKALEDAVTMTAPGGRIAVITF 242 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 HSLEDR+ K+ F S R M +P P V + I +K + +++ N RS S Sbjct: 243 HSLEDRICKQLFRKLSQPPELPRGMPVVPEGYEP-VLKLINRKPITANVDELDDNHRSHS 301 Query: 309 AKLR 312 AKLR Sbjct: 302 AKLR 305 >gi|296129435|ref|YP_003636685.1| S-adenosyl-methyltransferase MraW [Cellulomonas flavigena DSM 20109] gi|296021250|gb|ADG74486.1| S-adenosyl-methyltransferase MraW [Cellulomonas flavigena DSM 20109] Length = 333 Score = 181 bits (460), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 111/307 (36%), Positives = 176/307 (57%), Gaps = 10/307 (3%) Query: 20 HVPVLLEKVI---ALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCG 74 HVPVLLE+ + A APG V++D T G GG++ + +V + +DRDP A++ Sbjct: 12 HVPVLLERCVELLAPALAAPGAVLVDCTLGMGGHTEGVLRAIEHVRVVGIDRDPQALALA 71 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E + + E+F+ A + ++ D V GV GV+ DLGVSS+Q+D +RGF++ Sbjct: 72 SERLAPFGERFTGVHAVYDEIGDVVERLGLPGVQGVLMDLGVSSLQLDEAERGFAYAHDA 131 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM +G +A+DV+N + +D+ R+L + GEE+ A+RIA +V+ R+ P T + Sbjct: 132 PLDMRMDPTTGPTAADVLNTYDERDIARVLRVYGEERFAARIARGVVRFRERTPLTRTSE 191 Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +++ V ++ HPA R+FQALRI VN E+ L + L +A L GG ++V S Sbjct: 192 LVDIVRAGVPAATRRTGGHPAKRTFQALRIEVNGELAALERALPAAIDVLAVGGRIVVES 251 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 + SLEDRLVK+ A+ + + H + +T+ + ++A N R++S Sbjct: 252 YQSLEDRLVKRALAAGATSSAPPDLPVEPVTHAPYLRLLTRGAEEADEAELARNPRAQSV 311 Query: 310 KLRAGMR 316 +LRA R Sbjct: 312 RLRAAER 318 >gi|229822998|ref|ZP_04449068.1| hypothetical protein GCWU000282_00291 [Catonella morbi ATCC 51271] gi|229787811|gb|EEP23925.1| hypothetical protein GCWU000282_00291 [Catonella morbi ATCC 51271] Length = 314 Score = 181 bits (460), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 115/305 (37%), Positives = 173/305 (56%), Gaps = 13/305 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMG--SNVIALDRDPFAVSCGQE 76 H VLL + + L+ P V +D T G G+++ ++G ++ A D+D A++ + Sbjct: 5 HETVLLHETVDGLDIKPDGVYVDCTLGGAGHAQYLLGQLGPQGHLYAFDQDMTAINNAKL 64 Query: 77 TMRDYKE--QFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + DY E Q + F L+ + + G VDG+ +DLGVSS Q+D +RGFS+ + Sbjct: 65 KLADYVEKGQVTFIHQNFRHLKQALEELGISQVDGIYYDLGVSSPQLDVAERGFSYGQEA 124 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM+ +SA +VVN+ +DL IL GEEK A RIA AI +RR P +TT + Sbjct: 125 RLDMRMNQEQALSAYEVVNEWPYEDLVHILYRYGEEKFAKRIARAIEERRAQRPIETTTE 184 Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +++ + ++ HPA RSFQA+RI VN+E+ + L A LK G + V++ Sbjct: 185 LAEIVKMAIPAATRRTGGHPAKRSFQAIRIAVNDELGAVEDSLEQALTLLKPEGRVSVIT 244 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 FHSLEDRLVK+ F S + R + +P A F + +K +V + E++ N RSR Sbjct: 245 FHSLEDRLVKQLFKEVSQEPEVPRGLPVLPGQMQ-APFTLVNRKPIVASPEELEANNRSR 303 Query: 308 SAKLR 312 SAKLR Sbjct: 304 SAKLR 308 >gi|224476281|ref|YP_002633887.1| S-adenosyl-methyltransferase MraW [Staphylococcus carnosus subsp. carnosus TM300] gi|262826678|sp|B9DPQ9|RSMH_STACT RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|222420888|emb|CAL27702.1| putative MraW methylase family S-adenosyl-methyltransferase [Staphylococcus carnosus subsp. carnosus TM300] Length = 311 Score = 181 bits (460), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 111/306 (36%), Positives = 170/306 (55%), Gaps = 13/306 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HV V+L + I LN V +D T G G++ ++IA+D+D A+ +E Sbjct: 4 HVSVMLRETIDELNVKKDGVYVDCTLGGAGHALYLLNQLDENGHLIAIDQDLTAIENAKE 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++D+ +Q + + F Q+ + D VDG+ +DLGVSS Q+D +RGFS+ + L Sbjct: 64 VLKDHLDQVTFVHSNFRQINQILDDLDIDKVDGIYYDLGVSSPQLDVPERGFSYHQDARL 123 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM +SA +VVN+ +DL RI GEEK + +IA I K R++ P +TT L Sbjct: 124 DMRMDQTQELSAYEVVNEWPYEDLVRIFYRYGEEKFSKQIARRIEKTRENEPIETTLQLV 183 Query: 193 SLIQKTVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I++ + +K R HPA R FQA+RI VN+E++ L A + +K G + V++F Sbjct: 184 DVIKEGIP-AKARRKGGHPAKRVFQAIRIAVNDELKAFEDSLEQAIERVKVHGRISVITF 242 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 HSLEDRL K+ F R + IP P + + + +K + ++ED+A N R+RS Sbjct: 243 HSLEDRLCKQIFQEYEKGPEVPRGLPIIPEEYTPKL-KRVNRKPISASEEDLAENNRARS 301 Query: 309 AKLRAG 314 AKLR Sbjct: 302 AKLRVA 307 >gi|153874645|ref|ZP_02002785.1| Bacterial methyltransferase [Beggiatoa sp. PS] gi|152068890|gb|EDN67214.1| Bacterial methyltransferase [Beggiatoa sp. PS] Length = 339 Score = 181 bits (460), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 119/324 (36%), Positives = 177/324 (54%), Gaps = 30/324 (9%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQ 75 +H PVLL + + L + +D TFG GG++++ +G + V+A D+DP AV + Sbjct: 12 EHQPVLLAEALKALTIYDDSIYIDCTFGRGGHTKAILNDLGPSGQVLAFDQDPEAVQIAK 71 Query: 76 E-TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + D + F++ + F+QLQ V +G V+GV+ DLGVSS Q++ RGFSF Sbjct: 72 ALCLTDNR--FNIIYSPFTQLQQQVEKRGWLGQVNGVLLDLGVSSPQLNTPTRGFSFMHD 129 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 GPLDMRM+ SG S + +NQA+ ++ +L GEE+ A IA AIV R A +TT Sbjct: 130 GPLDMRMNPNSGTSIGEWLNQADTDEIALVLKTYGEERHARHIAKAIVMARSKAELKTTC 189 Query: 190 DLSSLI--------QKTVYFSKNNRI-------HPATRSFQALRIFVNNEIEELAQGLRS 234 L+ +I +K + S + + HPAT++FQALRIF+N+E+E+L Q L Sbjct: 190 QLAEIISAVSIPYPKKMAHSSSSLKWGTQKKFKHPATQTFQALRIFINHELEQLQQVLPQ 249 Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKV 292 A L GG L+V+SFHSLEDR+VK+F R + P++ K Sbjct: 250 ALDVLAPGGRLVVISFHSLEDRIVKRFIRDCVRGDDFPPTMPITADQLSPSLLA--IGKP 307 Query: 293 VVPTQEDVAFNRRSRSAKLRAGMR 316 + PT + N R+RSA +R + Sbjct: 308 IKPTLAETQANPRARSAIMRVAEK 331 >gi|296329280|ref|ZP_06871781.1| S-adenosyl-methyltransferase MraW [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296153636|gb|EFG94453.1| S-adenosyl-methyltransferase MraW [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 314 Score = 181 bits (460), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 109/313 (34%), Positives = 176/313 (56%), Gaps = 20/313 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+PVL + + L P +D T G G +S + S+ +I++D+D A+ ++ Sbjct: 9 HIPVLYYETLDNLVINPDGTYIDCTLGGGSHSEGILERLSDKGLLISIDQDTNAIVYSKK 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + ++ +F+ F + GVD G++ D+GVSS Q+D +RGFS++ L Sbjct: 69 RLEKFGSKWKVFKGNFENIDTIAYMAGVDKVDGILMDIGVSSKQLDDPERGFSYRYDVKL 128 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ ISA DVVN + + L++I+ GEE+ A +IA IV+ R+S+P + T DL Sbjct: 129 DMRMNTDQKISAYDVVNTYSEEQLSKIIFEYGEERHARKIAKLIVEERKSSPIEKTSDLI 188 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +LI++ + + HPA ++FQA+RI VN E+E L + A + LK GG L +++FHS Sbjct: 189 ALIKRA--YPERASKHPAKKTFQAIRIEVNRELEVLENAMSKATELLKVGGRLAIITFHS 246 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV------FQSITKKVVVPTQEDVAFNRRS 306 LEDR+VK F K +A P + V F+ ITKK ++P +++ N R+ Sbjct: 247 LEDRIVKNKF-----KDLATACKCPKDIPICVCGGVKKFEVITKKPIIPIDDELKNNNRA 301 Query: 307 RSAKLRAGMRTVE 319 S+KLR R ++ Sbjct: 302 HSSKLRILERILD 314 >gi|257885174|ref|ZP_05664827.1| methyltransferase [Enterococcus faecium 1,231,501] gi|261206514|ref|ZP_05921214.1| methyltransferase [Enterococcus faecium TC 6] gi|289565424|ref|ZP_06445873.1| methylase MraW [Enterococcus faecium D344SRF] gi|294614715|ref|ZP_06694617.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium E1636] gi|294618987|ref|ZP_06698482.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium E1679] gi|257821026|gb|EEV48160.1| methyltransferase [Enterococcus faecium 1,231,501] gi|260079224|gb|EEW66915.1| methyltransferase [Enterococcus faecium TC 6] gi|289162753|gb|EFD10604.1| methylase MraW [Enterococcus faecium D344SRF] gi|291592453|gb|EFF24060.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium E1636] gi|291594648|gb|EFF26030.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium E1679] Length = 319 Score = 181 bits (460), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 112/304 (36%), Positives = 175/304 (57%), Gaps = 12/304 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H V+L++ + LN P V +D T G G+S S ++ A D+D A+ + Sbjct: 7 HYTVMLKETVDGLNIKPDGVYVDCTLGGAGHSEYLLSQLSSKGHLYAFDQDQKAIDHAKL 66 Query: 77 TMRDYKEQ--FSLFQATFSQLQDYVPDK--GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + Y EQ + +A F +L++ + + VDG+++DLGVSS Q+D +RGFS+ + P Sbjct: 67 RLASYVEQGMVTFIKANFRELEERLSEHVDKVDGILYDLGVSSPQLDEAERGFSYHQDAP 126 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S +SA V+N+ + +L +I GEEK + +IA I + R++ P QTT +L Sbjct: 127 LDMRMDQSAPLSAYHVINEYSYHELVKIFFRYGEEKFSKQIAREIERVRKTKPIQTTGEL 186 Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I++ + ++ HPA R FQA+RI VN+E+ L A + LK G + V++F Sbjct: 187 VEIIKQVIPAPARRKGGHPAKRIFQAVRIAVNDELGAEEASLEQAIRLLKVNGRISVITF 246 Query: 251 HSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 HSLEDR+VK F S + +IP P + + IT+K ++P++E++A N RSRS Sbjct: 247 HSLEDRIVKSMFKEYSTVQDLPPGLPVIPDEFQPEL-KVITRKPILPSEEELAENNRSRS 305 Query: 309 AKLR 312 AKLR Sbjct: 306 AKLR 309 >gi|294788560|ref|ZP_06753802.1| S-adenosyl-methyltransferase MraW [Simonsiella muelleri ATCC 29453] gi|294483437|gb|EFG31122.1| S-adenosyl-methyltransferase MraW [Simonsiella muelleri ATCC 29453] Length = 320 Score = 181 bits (460), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 119/314 (37%), Positives = 176/314 (56%), Gaps = 25/314 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQE 76 H+ VLL + + LN V +D TFG GG+SR ++G + +I D+DP A+ QE Sbjct: 9 HITVLLHEAVDALNIRADGVYVDGTFGRGGHSRLILSRLGESGRLIVFDKDPQAIEVAQE 68 Query: 77 TMRDYK------EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + K FS FQ L++ + +DG +FDLG+SS QID RGFSF+ Sbjct: 69 LAKQDKRVKVIHNGFSHFQVA---LKNDLGLNHIDGALFDLGISSPQIDDASRGFSFRFD 125 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM + G SA+D + A+ +++ ++ GEE+ + +IA AIV +R+ +P TT Sbjct: 126 APLDMRMDTTRGQSAADWLAIADEQEIHEVIKNYGEERFSRQIARAIVTQREDSPIITTN 185 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ + + V + + PATR+FQA+RIF+N E++E+ L L GG L V++ Sbjct: 186 QLAKITAQVVRTRERGQ-DPATRTFQAIRIFINRELDEIQAVLPQVVAHLNIGGRLAVIA 244 Query: 250 FHSLEDRLVKKFFASRSG-----KVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFN 303 FHSLEDRLVK+F + S K A+R +P AV K + P+ +++A N Sbjct: 245 FHSLEDRLVKQFIRTHSTHAPLPKWAAIRETDLPQPPLLAV-----GKAIKPSDDEIAHN 299 Query: 304 RRSRSAKLRAGMRT 317 R+RSA LR RT Sbjct: 300 PRARSAVLRIAERT 313 >gi|187925450|ref|YP_001897092.1| S-adenosyl-methyltransferase MraW [Burkholderia phytofirmans PsJN] gi|263446934|sp|B2SYY3|RSMH_BURPP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|187716644|gb|ACD17868.1| S-adenosyl-methyltransferase MraW [Burkholderia phytofirmans PsJN] Length = 317 Score = 181 bits (460), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 122/311 (39%), Positives = 181/311 (58%), Gaps = 21/311 (6%) Query: 20 HVPVLLEKVI-ALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 H VLLE+ + AL+ A G V +D TFG GG+SR + +IA D+DP A++ Q Sbjct: 11 HRTVLLEEAVQALVTRADG-VYVDGTFGRGGHSRLVLEKLAESGRLIAFDKDPLAIATAQ 69 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F + +F+ L+ + ++GV GV+ DLG+SS QID +RGFSF+ GP Sbjct: 70 QIA---DPRFGIVHESFASLRTAIAERGVGRVSGVLLDLGISSPQIDDPERGFSFRADGP 126 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQT 187 LDMRM + G SA+D + +A V++LT ++ GEE+ A +IA A+V RR + P + Sbjct: 127 LDMRMDPTRGESAADWLARATVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLVS 186 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T +L+ ++ V + + PATR+FQA+RI +N E+ EL L +A L+ GG L+V Sbjct: 187 TGELAQIVANVVKTREKGK-DPATRTFQAIRIHINQELAELQVVLEAALSLLEQGGRLVV 245 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA--HPAVFQSITKKVVVPTQEDVAFNRR 305 +SFHSLEDR+VK+F + + AV +P A P+ I +V E VA N R Sbjct: 246 ISFHSLEDRIVKRFMQAHA-STPAVDRRLPIRAVDLPSPPLKIIGRVFASDAE-VAANPR 303 Query: 306 SRSAKLRAGMR 316 +RSA +R R Sbjct: 304 ARSAVMRVAER 314 >gi|261379351|ref|ZP_05983924.1| S-adenosyl-methyltransferase MraW [Neisseria subflava NJ9703] gi|284797791|gb|EFC53138.1| S-adenosyl-methyltransferase MraW [Neisseria subflava NJ9703] Length = 320 Score = 181 bits (460), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 114/306 (37%), Positives = 169/306 (55%), Gaps = 10/306 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQE 76 HV VLL + + L + +D TFG GG+SR ++G ++ D+DP A++ E Sbjct: 9 HVTVLLHEAVDALAIREDGIYVDGTFGRGGHSRLILSRLGKQGRLVVFDKDPEAIAVANE 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 K + S+ F Q + + G+D G +FDLG+SS QID G RGFSF+ PL Sbjct: 69 LAVQDK-RVSVVHNGFETFQTALDELGIDKIDGALFDLGISSPQIDDGSRGFSFRFDAPL 127 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + G+SA++ + A+ +DL ++ GEE+ + +IA AIV +R+ +P TT+ L+ Sbjct: 128 DMRMDPTRGMSAAEWIATASEQDLHEVIKNYGEERFSRQIARAIVAQREESPIDTTRKLA 187 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 L+ + V + + PATR+FQA+RIF+N E+EE+ L LK GG L V++FHS Sbjct: 188 QLVAQNVRTRERGQ-DPATRTFQAVRIFINRELEEVEAVLPQVAGRLKEGGRLAVIAFHS 246 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK+F S R + A P K + P + N R+RSA L Sbjct: 247 LEDRIVKQFIKKYSQHAPLPRWAVVKEADLPQPPLKAVGKAIKPGSTETETNPRARSAVL 306 Query: 312 RAGMRT 317 R R+ Sbjct: 307 RVAERS 312 >gi|315222117|ref|ZP_07864026.1| S-adenosyl-methyltransferase MraW [Streptococcus anginosus F0211] gi|315188743|gb|EFU22449.1| S-adenosyl-methyltransferase MraW [Streptococcus anginosus F0211] Length = 316 Score = 181 bits (460), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 114/309 (36%), Positives = 177/309 (57%), Gaps = 14/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQE 76 HV VLL + I L+ P V +DAT G G+S K+G N + A D+D A+ Q+ Sbjct: 7 HVTVLLHETIDQLDIKPNGVYVDATLGGAGHSEYLLSKLGENGRLYAFDQDQTAIEHAQK 66 Query: 77 TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y EQ + F L+ + + GV DG+ +DLGVSS Q+D +RGFS+++ Sbjct: 67 RLASYVEQGMVTFINDNFRHLKARLNELGVEEIDGICYDLGVSSPQLDERERGFSYKQDA 126 Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ ++A +VVNQ + DL RI GE+K + +IA I + R+ P +TT + Sbjct: 127 PLDMRMNREAKLTAYEVVNQYSYHDLVRIFFKYGEDKFSKQIARKIEQMREKKPIETTTE 186 Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ +I K+ +K + HPA + FQA+RI VN+E+ + ++ A L G + V+ Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDLLAVDGRISVI 245 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F S +V IP + P + + +T+K ++P++E++ N R+ Sbjct: 246 TFHSLEDRLTKQLFKEASTVEVPKGLPFIPEDLQPKM-KLVTRKPILPSKEELDNNNRAH 304 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 305 SAKLRVAQK 313 >gi|319949143|ref|ZP_08023234.1| 16S rRNA m(4)C1402 methyltranserfase [Dietzia cinnamea P4] gi|319437192|gb|EFV92221.1| 16S rRNA m(4)C1402 methyltranserfase [Dietzia cinnamea P4] Length = 340 Score = 181 bits (460), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 109/317 (34%), Positives = 169/317 (53%), Gaps = 26/317 (8%) Query: 20 HVPVLLEKVIALLNP----------APGKVILDATFGAGGYSRSF-CKMGS-NVIALDRD 67 HVPV LE+ I L P AP VI+D T G GG+S + G V+ +DRD Sbjct: 16 HVPVFLERTIELFRPVVEAAAEEGRAP--VIVDGTLGLGGHSSHLLAEFGELRVLGVDRD 73 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYV----PD------KGVDGVVFDLGVSSMQ 117 P A+ + Y+++F+ A F + PD +DG++ D GVSSMQ Sbjct: 74 PEALDMATRRLTAYRDRFTPVHARFDDFNSVIAALPPDARDDAGPAIDGILLDFGVSSMQ 133 Query: 118 IDCGDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 +D +RGF++ PLDMRM +G +A+D++ + +L RIL + GEE+ A +IA AI Sbjct: 134 LDVAERGFAYSVDAPLDMRMDPTTGPTAADILAEYPRDELARILRVYGEERFARQIAAAI 193 Query: 177 VKRRQSAPFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 V+RR + P T+ L L+ T+ ++ HP R FQALRI VN E+E + + Sbjct: 194 VRRRDTDPIVTSSQLVELLYDTIPQGARRTGGHPGKRVFQALRIEVNAELEAVENAVPGY 253 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295 L+ GG + +++HSLED++VK+ A+R+ + H F+++T+ Sbjct: 254 LDLLRLGGRAVFMAYHSLEDKIVKRELATRTASRTPAGLPVELPGHGPEFEAVTRGAEKA 313 Query: 296 TQEDVAFNRRSRSAKLR 312 +QE++ N RS S ++R Sbjct: 314 SQEEIDHNPRSASVRVR 330 >gi|227497582|ref|ZP_03927805.1| S-adenosyl-methyltransferase [Actinomyces urogenitalis DSM 15434] gi|226832951|gb|EEH65334.1| S-adenosyl-methyltransferase [Actinomyces urogenitalis DSM 15434] Length = 363 Score = 181 bits (460), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 116/317 (36%), Positives = 184/317 (58%), Gaps = 24/317 (7%) Query: 20 HVPVLLEKVIALLNPA----PGK-VILDATFGAGGYS----RSFCKMGSNVIALDRDPFA 70 H PVLL + + LL PA P + V++D T G GG++ R F ++ VI +DRD A Sbjct: 24 HTPVLLRRCLDLLAPAIEEAPAEPVMIDCTLGMGGHTEGALRRFPRL--RVIGIDRDSQA 81 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYV------PDKGVDGVVFDLGVSSMQIDCGDRG 124 ++ + + ++F+ +AT+ +++ + VD V+ DLGVSS+Q+D +RG Sbjct: 82 IALASARLAPFGDRFTAVRATYDEVEAVAHRFSQDGEGTVDAVLMDLGVSSLQLDDVERG 141 Query: 125 FSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 FS+ + PLDMRM S G++A ++++ A +L RIL GEE+ A RI AIV+RR + Sbjct: 142 FSYARPAPLDMRMDQSQGMTAQELLDGAEPGELVRILRAYGEERFAPRIVEAIVRRRSAG 201 Query: 184 -PFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 P +TQ+L+ L+++ V ++ HPA R+FQALRI VN E++ L + + A +L+ Sbjct: 202 HPVSSTQELAELVRQAVPAATRRTGGHPAKRTFQALRIAVNAELDVLERAVPRALNSLRV 261 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQED 299 GG L+V S+ SLEDR+VK+ A +G +V +P A Q++T + + Sbjct: 262 GGRLVVESYQSLEDRIVKQAIA--AGTRASVPDDLPFVPEGAGAYLQALTHGAERADEAE 319 Query: 300 VAFNRRSRSAKLRAGMR 316 +A N RS +LRA +R Sbjct: 320 LAANPRSAPVRLRAAVR 336 >gi|325956496|ref|YP_004291908.1| 16S rRNA m(4)C1402 methyltranserfase [Lactobacillus acidophilus 30SC] gi|325333061|gb|ADZ06969.1| 16S rRNA m(4)C1402 methyltranserfase [Lactobacillus acidophilus 30SC] Length = 315 Score = 181 bits (459), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 115/312 (36%), Positives = 173/312 (55%), Gaps = 17/312 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77 H VLL + I L P G + +DATFG GG++R +I D+D +A+ + Sbjct: 5 HTSVLLHETIDNLKPKNGGLYVDATFGGGGHARYLLSKIDTGTLIGFDQDEYAIKSAKLN 64 Query: 78 MRDYKE-----QFSLFQATFSQLQ-DYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 D E + L F+ LQ D V G+DG+ +DLGVSS Q D DRGFS++ Sbjct: 65 FADLLEPDSEPKLKLVHDNFTNLQRDLVELGYSDGIDGIYYDLGVSSPQFDQADRGFSYR 124 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + LDMRM S + A +VN + K+L IL G+EK + +IAH IV+RR+ P T Sbjct: 125 YNARLDMRMDQSQSLDAYQLVNTLSQKELADILYKYGDEKFSRQIAHKIVERRKDKPIVT 184 Query: 188 TQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T +L +I++ + +++ HPA +SFQALR+ VN+E++ L L A K L+ GG + Sbjct: 185 TFELVDIIKEAIPAYARRTGGHPAKKSFQALRVAVNHELDVLQASLEEAIKVLRPGGRIS 244 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 V++F S ED++VKK F S +V R M +P + P + + + +K + + ++ N Sbjct: 245 VITFQSHEDKIVKKIFKKYS-EVEVPRGMPFVPDDMKPTL-RLVNRKPITASTSELEKNN 302 Query: 305 RSRSAKLRAGMR 316 RS SAKLR + Sbjct: 303 RSHSAKLRVAEK 314 >gi|257867494|ref|ZP_05647147.1| methyltransferase [Enterococcus casseliflavus EC30] gi|257873823|ref|ZP_05653476.1| methyltransferase [Enterococcus casseliflavus EC10] gi|257877573|ref|ZP_05657226.1| methyltransferase [Enterococcus casseliflavus EC20] gi|257801550|gb|EEV30480.1| methyltransferase [Enterococcus casseliflavus EC30] gi|257807987|gb|EEV36809.1| methyltransferase [Enterococcus casseliflavus EC10] gi|257811739|gb|EEV40559.1| methyltransferase [Enterococcus casseliflavus EC20] Length = 319 Score = 181 bits (459), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 114/312 (36%), Positives = 173/312 (55%), Gaps = 13/312 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H V+L++ + L P V +D T G G+S S ++ A D+D A+ +E Sbjct: 6 HYTVMLQETVDGLKIRPEGVYVDCTLGGAGHSEYLLSQLSEEGHLFAFDQDQTAIDHAKE 65 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y K + ++ F L++ + GV DG+++DLGVSS Q+D +RGFS+ + Sbjct: 66 RLAPYVAKGMVTFIKSNFRYLKEALHQHGVSRVDGILYDLGVSSPQLDEAERGFSYHQDA 125 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + ++A +VVNQ + L +I GEEK + +IA I + RQ P +TT + Sbjct: 126 PLDMRMDQTAALTAYEVVNQFDYHQLVKIFFRYGEEKFSKQIAREIERVRQDHPIETTGE 185 Query: 191 LSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I+ + ++ HPA R FQA+RI VN+E+ + + L A L G + V++ Sbjct: 186 LVDIIKTAIPAPARRKGGHPAKRVFQAIRIAVNDELGVIEESLEQAIHLLAVNGRVSVIT 245 Query: 250 FHSLEDRLVKKFFASRS--GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 FHSLEDR+VK F S + MIP P + + IT+K ++PT+E+VA N RSR Sbjct: 246 FHSLEDRIVKSMFKEYSTPKDMPPGLPMIPEEFQPTL-KLITRKPLLPTEEEVAENNRSR 304 Query: 308 SAKLRAGMRTVE 319 SAKLR + E Sbjct: 305 SAKLRIAEKIKE 316 >gi|323527438|ref|YP_004229591.1| S-adenosyl-methyltransferase MraW [Burkholderia sp. CCGE1001] gi|323384440|gb|ADX56531.1| S-adenosyl-methyltransferase MraW [Burkholderia sp. CCGE1001] Length = 313 Score = 181 bits (459), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 122/311 (39%), Positives = 182/311 (58%), Gaps = 21/311 (6%) Query: 20 HVPVLLEKVI-ALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 H VLLE+ + AL+ A G V +D TFG GG+SR + S +IA D+DP A++ Q Sbjct: 7 HRTVLLEEAVEALVTRADG-VYVDGTFGRGGHSRLVLEKLSEAGRLIAFDKDPLAIATAQ 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F + +F+ L+ + +G++ GV+ DLGVSS Q+D +RGFSF+ GP Sbjct: 66 QIA---DPRFGIVHESFASLRTAIAARGIERVSGVLLDLGVSSPQVDDPERGFSFRADGP 122 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQT 187 LDMRM + G SA+D + +A V++LT ++ GEE+ A +IA A+V RR + P + Sbjct: 123 LDMRMDPTRGESAADWLARATVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLVS 182 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T +L+ ++ V + + PATR+FQA+RI +N E+ EL L +A L+ GG L+V Sbjct: 183 TGELAQIVANVVKTREKGK-DPATRTFQAIRIHINQELAELQVVLEAALALLEQGGRLVV 241 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA--HPAVFQSITKKVVVPTQEDVAFNRR 305 +SFHSLEDR+VK+F + + AV +P A P+ I +V E VA N R Sbjct: 242 ISFHSLEDRIVKRFMQAHA-SAPAVDRRLPIRAVDLPSPPLKIIGRVFASDAE-VAANPR 299 Query: 306 SRSAKLRAGMR 316 +RSA +R R Sbjct: 300 ARSAVMRVAER 310 >gi|322384129|ref|ZP_08057847.1| S-adenosyl-methyltransferase MraW-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321151209|gb|EFX44518.1| S-adenosyl-methyltransferase MraW-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 317 Score = 181 bits (459), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 107/309 (34%), Positives = 178/309 (57%), Gaps = 17/309 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+ VL E+ + L+ P + +D T G G+S S ++ALD+D A++ Q Sbjct: 4 HITVLKEEAVEGLDIKPDGLYVDCTLGGAGHSVRIASQLSKEGLLLALDQDASALANAQN 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVP---------DKGVDGVVFDLGVSSMQIDCGDRGFSF 127 + +Y+++ + + F +L+ + VDG++FDLGVSS Q+D +RGFS+ Sbjct: 64 VLAEYEDRVRIVKTNFRELKHVLQLEPRTVKNGTPQVDGILFDLGVSSPQLDEAERGFSY 123 Query: 128 QKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 LDMRM S ++A +VN+ +++ RIL + GEEK + +IA +IVK R++ + Sbjct: 124 NHDAELDMRMDRSSPLTAKTIVNEWAPEEIARILFVYGEEKFSRKIASSIVKARENKTIE 183 Query: 187 TTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT +L +I++ + ++ + HPA RSFQALRI VN+E+ L A + L GG + Sbjct: 184 TTGELVEIIKQAIPAAARRSGPHPAKRSFQALRIAVNDELGAFENALEQAIECLAPGGRV 243 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 V++FHSLEDR+ K+ FA GK M N + ++ + + +K + +++++A+N Sbjct: 244 AVITFHSLEDRICKQMFAKFVGKCTCPPDFPMCVCN-NKSILKLVNRKPITASEKELAYN 302 Query: 304 RRSRSAKLR 312 R+RSAKLR Sbjct: 303 PRARSAKLR 311 >gi|301300385|ref|ZP_07206587.1| S-adenosyl-methyltransferase MraW [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851987|gb|EFK79669.1| S-adenosyl-methyltransferase MraW [Lactobacillus salivarius ACS-116-V-Col5a] Length = 314 Score = 181 bits (459), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 111/305 (36%), Positives = 174/305 (57%), Gaps = 13/305 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYS-RSFCKMGSN--VIALDRDPFAVSCGQE 76 H+ VLL + + LN P +D T G GG+S K+ N + + D+D A++ ++ Sbjct: 6 HITVLLNEAVDGLNIKPDGTYVDCTLGGGGHSGLILSKLSENGKLYSFDQDITAINFNKD 65 Query: 77 TMRDYKE--QFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++ E + + ++ F + + + + GVDG+++DLGVSS Q D DRGFS+ Sbjct: 66 KFKEENELGKINFIKSNFRNISEELNKRNILGVDGILYDLGVSSPQFDNADRGFSYNYDA 125 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S ++A DVVN + + L RI GEEK A IA I K RQ P +TT Sbjct: 126 PLDMRMDQSQSLTARDVVNDWSYEQLVRIFFRYGEEKFAKSIARRIEKVRQQTPIETTGQ 185 Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L LI++ + ++ HPA ++FQA+RI VN+E+ L + L A L GG + V++ Sbjct: 186 LVDLIKEAIPAKARRKGGHPAKKTFQAIRIAVNDELGALEESLEQALDLLNPGGRISVIT 245 Query: 250 FHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 F SLEDRLVK F ++ ++ +IP ++ ++ IT+K +VP+++++ N R+ Sbjct: 246 FQSLEDRLVKVMFKQKTNLPELPPGLPVIP-DSQKVEYKLITRKPIVPSEDEITHNNRAH 304 Query: 308 SAKLR 312 SAKLR Sbjct: 305 SAKLR 309 >gi|254479883|ref|ZP_05093131.1| S-adenosyl-methyltransferase MraW [marine gamma proteobacterium HTCC2148] gi|214039445|gb|EEB80104.1| S-adenosyl-methyltransferase MraW [marine gamma proteobacterium HTCC2148] Length = 308 Score = 181 bits (459), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 116/307 (37%), Positives = 170/307 (55%), Gaps = 23/307 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VLL + + L AP +D TFG GG+SR +++ +D+DP A C + Sbjct: 5 HQTVLLREAVEALVTAPSGAYVDGTFGRGGHSRFLLDQLDDNGHLLGVDKDPVACECAAQ 64 Query: 77 TMRDYKEQFSLFQATFS----QLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +FS + +F+ QLQ D DG++ DLGVSS Q+D RGFSF GP Sbjct: 65 -LSSADSRFSFYHGSFADLPQQLQLMDID-AFDGILLDLGVSSPQLDEAGRGFSFMSDGP 122 Query: 133 LDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + SG +A+ ++ A+ + +L GEE+ A RIA AIVK R+ P TT L Sbjct: 123 LDMRMDTSSGETAAQWLSYADTTAIAEVLKEYGEERFAKRIAAAIVKAREVEPLTTTAQL 182 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ + + ++ HPATR+FQA+RI VN E+E+L L S+ LK GG L+V+SFH Sbjct: 183 AKVVSEANPRWERHK-HPATRAFQAIRIKVNRELEDLGDLLASSLDMLKVGGRLVVISFH 241 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK------KVVVPTQEDVAFNRR 305 SLEDR+VK++ + MA +P+ P ++ + K + +V N R Sbjct: 242 SLEDRMVKRYM-----RDMARGEQLPAGV-PVTDAALNRRMKLVGKATKASDAEVDENVR 295 Query: 306 SRSAKLR 312 SRSA +R Sbjct: 296 SRSAVMR 302 >gi|222151001|ref|YP_002560154.1| S-adenosyl-methyltransferase MraW [Macrococcus caseolyticus JCSC5402] gi|263456379|sp|B9EB47|RSMH_MACCJ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|222120123|dbj|BAH17458.1| S-adenosyl-methyltransferase MraW [Macrococcus caseolyticus JCSC5402] Length = 310 Score = 181 bits (459), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 108/302 (35%), Positives = 168/302 (55%), Gaps = 10/302 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77 HV VLLE+ + LN P + +D T G G+S K ++I++D+D A+ Sbjct: 4 HVTVLLEETVDQLNIDPNGIYVDCTLGGAGHSLYLVKQLQEGHLISIDQDQTAIDNAHII 63 Query: 78 MRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++DY ++ + + F L D ++ + VDG+++DLGVSS Q+D G+RGFS+ + LD Sbjct: 64 LKDYLDKVTFVKDNFRNLSDILAHLDIQKVDGILYDLGVSSPQLDVGERGFSYHQEAKLD 123 Query: 135 MRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM +SA +VVN + L I GEEK + +IA I R+ P +TT +L Sbjct: 124 MRMDQTQTLSAYEVVNTWPYEKLVSIFFRYGEEKFSKQIARKIEAERELKPIETTTELVE 183 Query: 194 LIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ + ++ HPA R FQA+RI VN+E+ + A ++K GG + V++FHS Sbjct: 184 IIKAAIPAPARRTGGHPAKRVFQAIRIAVNDELGAFESSIEQAIDSVKPGGRISVITFHS 243 Query: 253 LEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 LEDRL K+ F S R + +P P + + IT+K + + E++ N R+RSAK Sbjct: 244 LEDRLCKQVFQEYSKGPDIPRGLPVVPPEYQPKL-KKITRKPITSSNEELEHNNRARSAK 302 Query: 311 LR 312 LR Sbjct: 303 LR 304 >gi|300112935|ref|YP_003759510.1| S-adenosyl-methyltransferase MraW [Nitrosococcus watsonii C-113] gi|299538872|gb|ADJ27189.1| S-adenosyl-methyltransferase MraW [Nitrosococcus watsonii C-113] Length = 318 Score = 181 bits (459), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 118/315 (37%), Positives = 184/315 (58%), Gaps = 15/315 (4%) Query: 7 KTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIA 63 K +S+ H H PVLL +VI L + +D TFG GG++++ S+ ++ Sbjct: 3 KNKTSSSHQ----HQPVLLREVIQALAIRRDGIYIDGTFGRGGHAQAILAALSSEGRLLG 58 Query: 64 LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQID 119 +D+DP A++ G + +F++ QA+ L V ++G ++G +FDLGVSS Q++ Sbjct: 59 VDKDPAAIAAGHALAQK-DGRFTIVQASIGDLARVVSERGWLRKINGALFDLGVSSPQLE 117 Query: 120 CGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178 +RGFSF + GPLDMRM+ + G SA++ + A K++ +L + GEE+ RIA AI++ Sbjct: 118 NAERGFSFLQDGPLDMRMNPAVGQSAAEWLANAKEKEIAEVLRVYGEERYCRRIARAIIQ 177 Query: 179 RRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R T+ L+ ++ K + RIHPATRSFQA+RIF+N+E+EEL L A A Sbjct: 178 ARGLNSLTRTKQLAEVVAKAIP-RWERRIHPATRSFQAIRIFINHELEELRAALEQALAA 236 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297 L G L V+SFHSLEDR+VK+FF ++ G+ + + + + K + P Sbjct: 237 LAVKGRLAVISFHSLEDRIVKRFFREKARGEDLPLDLPVMQEDFQQASLKVLGKPIWPVP 296 Query: 298 EDVAFNRRSRSAKLR 312 E++A N R+RSA+LR Sbjct: 297 EEIAHNPRARSARLR 311 >gi|297626718|ref|YP_003688481.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922483|emb|CBL57056.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 342 Score = 181 bits (459), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 113/306 (36%), Positives = 170/306 (55%), Gaps = 13/306 (4%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74 HVPV+ +V+ LL+PA PG V +D T G G++ + ++ +DRD A+ Sbjct: 14 HVPVMAARVVELLSPALDHPGAVYVDGTLGMAGHAELMLTANPQARLVGIDRDHDALDLA 73 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + + L +A F +L + D G+ D +FDLG+SS+QID DRGF+++ Sbjct: 74 SRRLAPFGARVHLARARFDELGRVLDDAGIATIDAALFDLGLSSLQIDRADRGFAYRVDA 133 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S ++A+ V+N+ + DL R+L GEEKQA+RI AIV R+ PF + Sbjct: 134 PLDMRMDTRSELTAARVLNEYSPGDLVRVLRDYGEEKQATRIVRAIVAEREREPFTDSAR 193 Query: 191 LSSLIQKTVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L LI + + + + +PA R+FQALRI VN E+E L+ L + V+ Sbjct: 194 LVDLILRAIPAAVRTKTKGNPAKRTFQALRIEVNGELEALSTVLPVMLGRMGPAARAAVL 253 Query: 249 SFHSLEDRLVKKFF-ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 ++HSLEDR+VK+ F A+ S A ++P A F +T+ P ++A N RS Sbjct: 254 AYHSLEDRIVKQVFTAATSDSAPAGLPVVPDEMA-ARFAPLTRGAEKPDAAEIAENPRSA 312 Query: 308 SAKLRA 313 SA+LRA Sbjct: 313 SARLRA 318 >gi|148828289|ref|YP_001293042.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae PittGG] gi|263456035|sp|A5UIQ3|RSMH_HAEIG RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|148719531|gb|ABR00659.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae PittGG] Length = 289 Score = 181 bits (459), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 111/261 (42%), Positives = 158/261 (60%), Gaps = 20/261 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQE 76 H+ VLL + + L + +D TFG GG+SR ++ SN +IA+DRDP A++ E Sbjct: 12 HITVLLHEAVNGLALKENGIYIDGTFGRGGHSRFILSQLSSNGRLIAVDRDPRAIA---E 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +F + +FS + + + DK +DG++ DLGVSS Q+D +RGFSF K G Sbjct: 69 AHKIQDLRFQIEHNSFSHIPE-ICDKLNLVGKIDGILLDLGVSSPQLDEAERGFSFMKDG 127 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP------ 184 PLDMRM + G+SA + + Q +++DLT +L GEE+ A RIA AIV +SA Sbjct: 128 PLDMRMDTTQGLSAEEWLKQVSIEDLTWVLKTFGEERFAKRIATAIVDFNKSAVKNGTEF 187 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 T L+ LI + V F K+ HPATRSFQA+RIF+N+E++EL L SA L G Sbjct: 188 LSRTSQLAELISQAVPF-KDKHKHPATRSFQAIRIFINSELDELESLLNSALDMLAPEGR 246 Query: 245 LIVVSFHSLEDRLVKKFFASR 265 L ++SFHSLEDR+VK F ++ Sbjct: 247 LSIISFHSLEDRMVKHFMKNK 267 >gi|158334035|ref|YP_001515207.1| S-adenosyl-methyltransferase MraW [Acaryochloris marina MBIC11017] gi|263433314|sp|B0BYK8|RSMH_ACAM1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|158304276|gb|ABW25893.1| S-adenosyl-methyltransferase MraW, putative [Acaryochloris marina MBIC11017] Length = 298 Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 119/304 (39%), Positives = 171/304 (56%), Gaps = 29/304 (9%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76 +H+ VL +++A L + LDAT G GG+S + VIALD+D A+ + Sbjct: 9 NHISVLSHELMAGLMLQEQGLYLDATVGGGGHSALILSQYPQTQVIALDQDIQALEAARA 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK-GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + D ++ +Q FS Y P + DG++ DLGVSS Q+D +RGFSF+ LDM Sbjct: 69 KLHDACDRIQFWQGNFST---YHPGELRFDGIIADLGVSSAQLDRPERGFSFRYDADLDM 125 Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM S G++A+DV+N + +DL I GEE+ + RIA IV +R P +TT DL+ + Sbjct: 126 RMDQSQGLTAADVINTYSERDLADIFYHYGEERFSRRIARKIVSKR---PLRTTSDLARV 182 Query: 195 IQKTVYFSKNNR--IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 + ++ +K R IHPATR FQALRI VN E++ L + + A LK GG + ++SFHS Sbjct: 183 VASSLPAAKGRRRRIHPATRVFQALRIAVNQELQVLEKFIEIAPTWLKPGGRIGIISFHS 242 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK F S + Q +TKK +V ++++ N RSRSAKLR Sbjct: 243 LEDRIVKIHFRQNS-----------------LLQVVTKKPIVASEQEKRENSRSRSAKLR 285 Query: 313 AGMR 316 R Sbjct: 286 FAER 289 >gi|153006714|ref|YP_001381039.1| S-adenosyl-methyltransferase MraW [Anaeromyxobacter sp. Fw109-5] gi|263446704|sp|A7HH59|RSMH_ANADF RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|152030287|gb|ABS28055.1| S-adenosyl-methyltransferase MraW [Anaeromyxobacter sp. Fw109-5] Length = 310 Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 122/299 (40%), Positives = 173/299 (57%), Gaps = 5/299 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H VL +V+ +L PAPGK++LD T G GG+S + G+ VI LD+DP A++ + Sbjct: 7 HASVLAREVVEVLRPAPGKLLLDGTLGGGGHSELLLERGARVIGLDKDPRALAAATARLA 66 Query: 80 DYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + E F +A F ++ + GVDG + DLGVSS Q+D DRGFSF + GPLDMR Sbjct: 67 RWGEAFRAVRADFRDAKNVLSALGLTGVDGTLVDLGVSSPQLDQADRGFSFSRPGPLDMR 126 Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 M G D++ + + ++L RIL GEE A IA A+ + +S T L+ ++ Sbjct: 127 MGDEGERLEDLLRRIDERELARILREYGEEPFARPIARAVKRAVESDEALDTARLADIVA 186 Query: 197 KTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 K + + RIHPATR+FQALRI VN+E+ LA L L GG +SFHSLED Sbjct: 187 KAIPRKAWPRRIHPATRTFQALRIAVNDELGALAAWLDGLPATLNVGGRAAAISFHSLED 246 Query: 256 RLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 R+VK+ F + + + + + A F +IT+K VV ++ +VA N R+RSAKLRA Sbjct: 247 RMVKERFRALTQACTCPPDLPVCACGARASFAAITRKAVVASEAEVAENPRARSAKLRA 305 >gi|302380517|ref|ZP_07268982.1| S-adenosyl-methyltransferase MraW [Finegoldia magna ACS-171-V-Col3] gi|303234081|ref|ZP_07320730.1| S-adenosyl-methyltransferase MraW [Finegoldia magna BVS033A4] gi|302311460|gb|EFK93476.1| S-adenosyl-methyltransferase MraW [Finegoldia magna ACS-171-V-Col3] gi|302495006|gb|EFL54763.1| S-adenosyl-methyltransferase MraW [Finegoldia magna BVS033A4] Length = 312 Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 105/308 (34%), Positives = 169/308 (54%), Gaps = 9/308 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 HVP+LL + I LN GK+ +D T G G+SR K N +I D+D A+ ++ Sbjct: 5 HVPILLNECIENLNIRDGKIYVDCTVGGAGHSREIAKRIGNGKLICFDQDEDALKVAKQR 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + ++ ++ + F +++ + + G VDG++ D+GVSS QID RGFS+ LD Sbjct: 65 LEEFGDKIIFIKDNFKNIKNDLHNLGIEKVDGILMDIGVSSYQIDEDSRGFSYMHDADLD 124 Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM S ISA D+VN + +DL ++ +EK A RIA I R++ P TT +L Sbjct: 125 MRMDQSNPISAKDIVNTYSKEDLENVIFKYSDEKWAKRIAEFICNARETKPINTTFELVE 184 Query: 194 LIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+K + N + H A ++FQA+RI VN E++ L Q + + L G + +++FH Sbjct: 185 VIEKAIPKKVRVNQKGHSAKKTFQAIRIEVNKELDVLEQAVGDSIDLLNPEGRICIITFH 244 Query: 252 SLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLED++ K F R G + + H + IT+K + P+++++ N R+RSAK Sbjct: 245 SLEDKICKDIFRQRQKGCICPPEIPVCVCNHKPEIKIITRKPIEPSKDELMQNSRARSAK 304 Query: 311 LRAGMRTV 318 LR + + Sbjct: 305 LRVAEKII 312 >gi|104773820|ref|YP_618800.1| S-adenosyl-methyltransferase MraW [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|122983974|sp|Q1GAU0|RSMH_LACDA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263460423|sp|Q04B77|RSMH_LACDB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|103422901|emb|CAI97563.1| S-adenosyl-methyltransferase MraW [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|325125484|gb|ADY84814.1| S-adenosyl-methyltransferase mraW [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 314 Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 113/307 (36%), Positives = 172/307 (56%), Gaps = 16/307 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77 H VLL + I L P G +DATFG GG++R + N+I D+D +A+ Q Sbjct: 5 HTSVLLHETIDNLAPQSGGTYVDATFGGGGHARYLLRKLDKGNLIGFDQDQYAIDTAQSN 64 Query: 78 M-----RDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 D + + L FS L++ + G+DG+ +DLGVSS Q+D +RGFS++ Sbjct: 65 FAAFLKEDSQPRLQLVHNNFSHLKEELAKLGISGIDGIYYDLGVSSPQLDQAERGFSYRF 124 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM S A +VNQ + K L +L G+EK + +IA IV+RR+ P +TT Sbjct: 125 DARLDMRMDQSQDFDAYQLVNQYDQKQLADVLYRYGDEKFSRQIARKIVERRRGKPIETT 184 Query: 189 QDLSSLIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L +I++ + + R HPA +SFQA+R+ VN+E++ L L A L GG + V Sbjct: 185 FELVEIIKEAIPAAARRRGGHPAKKSFQAIRVEVNHELDVLRASLEEAISLLNPGGRISV 244 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 ++F SLED++VK+ F S +V R M +P P + + + +K + ++E++A N R Sbjct: 245 ITFQSLEDKIVKQTFKKYS-EVEIPRGMPVVPEGIKPTL-RLVNRKSITASEEELAENNR 302 Query: 306 SRSAKLR 312 S SAKLR Sbjct: 303 SHSAKLR 309 >gi|300854240|ref|YP_003779224.1| putative S-adenosyl-methyltransferase [Clostridium ljungdahlii DSM 13528] gi|300434355|gb|ADK14122.1| predicted S-adenosyl-methyltransferase [Clostridium ljungdahlii DSM 13528] Length = 309 Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 107/305 (35%), Positives = 167/305 (54%), Gaps = 9/305 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 HVPVLL + I LN + +D T G GG+S K S+ +I +D D A++ +E Sbjct: 5 HVPVLLNETINSLNIKEDGIYVDCTLGGGGHSFEILKRLSDKGRLIGIDEDTSAINATRE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + ++K + F + + + + VDG++ DLGVSS Q+D +RGFS+ K PL Sbjct: 65 RLNEFK-NITYVHNNFYYIDEILEELKIDKVDGILMDLGVSSYQLDESERGFSYMKDAPL 123 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ S +SA +V+N + ++L ++ GEE + RIA IV R+ AP QTT L Sbjct: 124 DMRMNRDSSLSAYEVINNYSEENLYNVIRDYGEENFSKRIAKFIVAEREKAPIQTTLQLV 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ + HPA R+FQA+RI VN E++ L + + + K L GG + +++FHS Sbjct: 184 DIIRNAIPARFQKEGHPAKRTFQAIRIEVNGELKILNKAVEDSVKRLNTGGRISIITFHS 243 Query: 253 LEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR++K F + + + I KK ++PT+E+ N RS+S+KL Sbjct: 244 LEDRIIKTKFKKLENPCTCPPDFPLCVCGKKPIVKIINKKPIIPTKEEKEKNSRSKSSKL 303 Query: 312 RAGMR 316 R + Sbjct: 304 RTAEK 308 >gi|291615182|ref|YP_003525339.1| S-adenosyl-methyltransferase MraW [Sideroxydans lithotrophicus ES-1] gi|291585294|gb|ADE12952.1| S-adenosyl-methyltransferase MraW [Sideroxydans lithotrophicus ES-1] Length = 308 Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 121/310 (39%), Positives = 171/310 (55%), Gaps = 22/310 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQE 76 H VLL + + L + +D TFG GG+SR K+G ++ALD+DP AV+ +E Sbjct: 7 HATVLLNEAVEALRVKADGIYVDCTFGRGGHSRLILEKLGERGRLVALDKDPMAVAAARE 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +F L + F L + + G VDGV+ DLGVSS Q+D RGFSF+ PL Sbjct: 67 I---GDARFQLQHSGFEHLGEVLRGLGIEKVDGVLLDLGVSSPQLDDESRGFSFRFDAPL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S G +A++ + A+ +L ++ GEE+ A +IA AIV RQ TT+ LS Sbjct: 124 DMRMDTSRGQTAAEWLATADEGELAEVIRDYGEERFARQIARAIVAARQERAILTTKQLS 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++ + V + + +PATR+FQA+RI++N E+EEL L LKAGG + V+SFHS Sbjct: 184 DIVAQCVRTREPGK-NPATRTFQAVRIYINRELEELESVLPQCVDHLKAGGRMAVISFHS 242 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAH------PAVFQSITKKVVVPTQEDVAFNRRS 306 LEDR+VK F + MA +P N P + K + + E+VA N R+ Sbjct: 243 LEDRMVKHFM-----RDMAQGDKLPKNVPIRAVDVPQGKMRLAGKPIYASAEEVAANPRA 297 Query: 307 RSAKLRAGMR 316 RSA LR R Sbjct: 298 RSAVLRVAER 307 >gi|312880226|ref|ZP_07740026.1| S-adenosyl-methyltransferase MraW [Aminomonas paucivorans DSM 12260] gi|310783517|gb|EFQ23915.1| S-adenosyl-methyltransferase MraW [Aminomonas paucivorans DSM 12260] Length = 324 Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 113/310 (36%), Positives = 170/310 (54%), Gaps = 35/310 (11%) Query: 20 HVPVLLEKVIALLNPAPGKV-ILDATFGAGGYSRSF------CKMGSNVIALDRDPFAVS 72 HVPV+L++V+ L P +V ++D T GA G++R+ C++ + +D+DP A+ Sbjct: 4 HVPVMLQEVLEALRPWEEQVCVVDGTLGAAGHARAILANCPRCRL----VGIDQDPSALD 59 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 + + Y ++ +L F L +P K +FDLGVSSMQID +RGFSF Sbjct: 60 EARLNLAPYGDRVTLIPGNFRDLSTLLPRYEIKVCSAFLFDLGVSSMQIDREERGFSFHG 119 Query: 130 SGPLDMRMSCS----GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-AP 184 GPLDMRM G++A+D+VN + DL + GE+ A IA AIV R+ P Sbjct: 120 EGPLDMRMDSGTLSRGVTAADIVNSWELGDLIGLFRRYGEDPFAVPIARAIVMHRERYGP 179 Query: 185 FQTTQDLSSLIQKTVYFSKNNR--IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 TT+ L +LI++T+ + HPA R FQALRI VN+E+E L + L S Sbjct: 180 LMTTESLVALIRRTLPAPAQRKAGTHPARRIFQALRIAVNDEMEALRETLESLPSFCGDP 239 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 ++ +++HSLEDRLVK+ + + + + +TKK +VP +E++ Sbjct: 240 STVVFITYHSLEDRLVKQHMKTWAAEGKGL--------------LVTKKPLVPREEEIRE 285 Query: 303 NRRSRSAKLR 312 N+RSRSAKLR Sbjct: 286 NKRSRSAKLR 295 >gi|212715550|ref|ZP_03323678.1| hypothetical protein BIFCAT_00448 [Bifidobacterium catenulatum DSM 16992] gi|212660917|gb|EEB21492.1| hypothetical protein BIFCAT_00448 [Bifidobacterium catenulatum DSM 16992] Length = 343 Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 114/306 (37%), Positives = 167/306 (54%), Gaps = 13/306 (4%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74 H PVLL + L+ PA PG + +D T G G+S +F K + +I +DRD A++ Sbjct: 8 HQPVLLRDCVDLVAPALANPGSIAVDCTLGLAGHSTAFLKASPHARLIGIDRDTEALALA 67 Query: 75 QETMR--DYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQK 129 + M+ ++F A F + D+G+D V DLG+SS+QID +RGFS+ Sbjct: 68 TQRMQMEGLADRFIPVHAAFDDFAQVLDDQGIDQVNAVFMDLGLSSLQIDETERGFSYSH 127 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM + ++A V+ + DL RI GEE+ + +IA AIV+RR+ P T+ Sbjct: 128 DAPLDMRMDVTQPLTAEQVLADYSFADLARIFRTYGEERFSKQIARAIVRRREIEPLTTS 187 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ L+ + V + +PA R FQALRI VN E+++LA L L GG L+V Sbjct: 188 GQLNRLVDEVVPQAHRPAGNPAKRVFQALRIEVNGELDKLAGTLPQIANHLAVGGRLVVE 247 Query: 249 SFHSLEDRLVKKFF-ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 S+HSLED+ VK F V A +IP + P F+ +T+ + E++A N RS Sbjct: 248 SYHSLEDKTVKTFMNQGLKADVPADMPVIPPDMMP-FFKELTRGAIKAGDEEIAMNPRSA 306 Query: 308 SAKLRA 313 S +LRA Sbjct: 307 SVRLRA 312 >gi|239623438|ref|ZP_04666469.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239521469|gb|EEQ61335.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 315 Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 103/302 (34%), Positives = 174/302 (57%), Gaps = 10/302 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN-VIALDRDPFAVSCGQET 77 H VLL + + LN PG + +D T G GG++ CK +GS +I +D+D A+ Sbjct: 8 HKSVLLYETVGSLNIKPGGIYVDGTLGGGGHAYEVCKRLGSGRLIGIDQDADAIEAAGRR 67 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + +K++ ++ ++ + ++ + + G VDG+ DLGVSS Q+D RGF++++ PLD Sbjct: 68 LEHFKDKVTIVRSNYENIRTVLNELGLLKVDGIYLDLGVSSYQLDTASRGFTYREDAPLD 127 Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM + +A+D+VN +L RI+ GE+ A IA IV+ R P +TT +L+ Sbjct: 128 MRMDQRNTTTAADIVNTYTEMELYRIIRDYGEDNFAKNIAKHIVRARGEHPIETTGELAE 187 Query: 194 LIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ + + HPA R+FQA+RI N+E++ L Q + + + L GG L +++FHS Sbjct: 188 IIKAAIPARVRATGGHPAKRTFQAIRIECNHELDVLEQSIDTMIELLNPGGRLSIITFHS 247 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 LEDR+VK F + + H P + + +++K ++P++E++ N RS+SAK Sbjct: 248 LEDRIVKNRFRTNENPCICP-HEFPVCVCGRKSKGKVVSRKPILPSKEELEENSRSKSAK 306 Query: 311 LR 312 LR Sbjct: 307 LR 308 >gi|167461086|ref|ZP_02326175.1| hypothetical protein Plarl_00698 [Paenibacillus larvae subsp. larvae BRL-230010] Length = 317 Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 107/309 (34%), Positives = 177/309 (57%), Gaps = 17/309 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+ VL E+ + L+ P + +D T G G+S S ++ALD+D A++ Q Sbjct: 4 HITVLKEEAVEGLDIKPDGLYVDCTLGGAGHSVRIASQLSKEGLLLALDQDASALANAQN 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVP---------DKGVDGVVFDLGVSSMQIDCGDRGFSF 127 + +Y+++ + + F +L+ + VDG++FDLGVSS Q+D +RGFS+ Sbjct: 64 VLAEYEDRVRIVKTNFRELKHVLQLEPRTVKNGTPQVDGILFDLGVSSPQLDEAERGFSY 123 Query: 128 QKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 LDMRM S ++A +VN+ +++ RIL + GEEK + +IA +IVK R++ + Sbjct: 124 NHDAELDMRMDRSSPLTAKTIVNEWAPEEIARILFVYGEEKFSRKIASSIVKARENKTIE 183 Query: 187 TTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT +L +I++ + ++ + HPA RSFQALRI VN+E+ L A + L GG + Sbjct: 184 TTGELVEIIKQAIPAAARRSGPHPAKRSFQALRIAVNDELGAFENALEQAIECLAPGGRV 243 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 V++FHSLEDR+ K+ FA GK M N + + + + +K + +++++A+N Sbjct: 244 AVITFHSLEDRICKQMFAKFVGKCTCPPDFPMCVCN-NKGILKLVNRKPITASEKELAYN 302 Query: 304 RRSRSAKLR 312 R+RSAKLR Sbjct: 303 PRARSAKLR 311 >gi|327441162|dbj|BAK17527.1| predicted S-adenosylmethionine-dependent methyltransferase [Solibacillus silvestris StLB046] Length = 316 Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 111/304 (36%), Positives = 171/304 (56%), Gaps = 11/304 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 DH VLL++ + LN P + +D T G G+S + S +I D+D A+ + Sbjct: 3 DHTTVLLKETVDGLNINPDGIYVDCTLGGAGHSEYLVQQLSEKGRLICFDQDTTAIENAK 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + DY ++ + F L++ + + DG+++DLGVSS Q+D +RGFS+ P Sbjct: 63 VRLADYLDRVIFVHSNFRYLKEELHKLNIHQIDGILYDLGVSSPQLDTPERGFSYHHDAP 122 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + +SA VVN+ + ++L RI GEEK + ++A I + R+ AP +TT L Sbjct: 123 LDMRMDQTAELSAYHVVNEWSYENLVRIFFRYGEEKFSKQVARKIEQAREIAPVETTGQL 182 Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 LI+ + ++ HPA R FQA+RI VN+E+ L A LK GG + V++F Sbjct: 183 VELIKDGIPAPARRKGGHPAKRIFQAIRIAVNDELGAAEDSLVDAIDLLKIGGRISVITF 242 Query: 251 HSLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 HSLEDRL K F AS + +IP + P + + +++K ++P+ E++A N RSRS Sbjct: 243 HSLEDRLTKTLFKEASSLPDLPPGLPVIPEHMKP-ILKLVSRKPILPSDEELAANNRSRS 301 Query: 309 AKLR 312 AKLR Sbjct: 302 AKLR 305 >gi|119505128|ref|ZP_01627204.1| S-adenosyl-methyltransferase [marine gamma proteobacterium HTCC2080] gi|119459110|gb|EAW40209.1| S-adenosyl-methyltransferase [marine gamma proteobacterium HTCC2080] Length = 307 Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 122/308 (39%), Positives = 175/308 (56%), Gaps = 14/308 (4%) Query: 18 GDHVPVLLEKVI-ALLNPAPG---KVILDATFGAGGYSRSFCKM---GSNVIALDRDPFA 70 G H VLLE+ + AL+ A G +V +D TFG GG+S + ++ G ++A D+DP A Sbjct: 3 GMHQAVLLEEAVEALMAGAGGTGSEVYVDGTFGRGGHSAAILRVLSDGQRLVAFDKDPEA 62 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + + FS +F L+ G+ GV+ DLGVSS Q+D G RGFSFQ+ Sbjct: 63 MESAR-LLSSENPAFSFLHDSFGNLER--AGSGLAGVLLDLGVSSPQLDDGSRGFSFQQQ 119 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 GPLDMRM S G +A++ +N A+ DL R+L GEEK A RI A+VKRR PF+ T+ Sbjct: 120 GPLDMRMDNSKGETAAEFINSASEADLRRVLWDFGEEKFARRIVSALVKRRMVEPFERTE 179 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 DL++++ + ++ HPATR+FQALRI VN E+ +L L L GG L+V+S Sbjct: 180 DLAAVVAAANPAWEKHK-HPATRTFQALRIHVNRELADLDILLGKVIDLLAVGGRLVVIS 238 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR VK F R + + +P + + K + +++A N R+RS Sbjct: 239 FHSLEDRRVKTFM-RREARGRELPRGVPIRDDERGERLRLLGKPRRASDDELAANPRARS 297 Query: 309 AKLRAGMR 316 A +R R Sbjct: 298 AIMRVAER 305 >gi|89902202|ref|YP_524673.1| S-adenosyl-methyltransferase MraW [Rhodoferax ferrireducens T118] gi|122996777|sp|Q21SW1|RSMH_RHOFD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|89346939|gb|ABD71142.1| methyltransferase [Rhodoferax ferrireducens T118] Length = 309 Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 129/313 (41%), Positives = 174/313 (55%), Gaps = 23/313 (7%) Query: 20 HVPVLLEKVIALL--NP-------APG-KVILDATFGAGGYSR---SFCKMGSNVIALDR 66 H VLL + + L NP A G +V +DATFG GG+SR S +IA D+ Sbjct: 3 HTTVLLNEAVDALFCNPDATADASATGAQVYVDATFGRGGHSRLILSRMTPTDRLIAFDK 62 Query: 67 DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126 D A+ E + +FS+ FS L D +P V GV+ DLG+SS QID RGFS Sbjct: 63 DAEALV---EAGNIHDSRFSIRHQGFSHL-DELPPASVAGVLLDLGISSPQIDNPARGFS 118 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-AP 184 F+ GPLDMRM + GIS + + A + + ++ GEE+ A IA AIV RRQ P Sbjct: 119 FRFEGPLDMRMDTTRGISVAQWLANAETEKIAEVIRDYGEERFAGPIAKAIVARRQERGP 178 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 +T +L+ L+ TV + + +PATR+FQA RIF+N E+EEL Q L ++ L GG Sbjct: 179 ISSTTELAQLVADTVKTREPGQ-NPATRTFQAFRIFINAELEELQQALAASLLVLAPGGR 237 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 L+V+SFHSLEDR+VK+F A S V R A P V Q + P+ +V+ N Sbjct: 238 LVVISFHSLEDRIVKQFIAQHSRDVYDRRAPF---APPKVMQLKALARLRPSAAEVSANP 294 Query: 305 RSRSAKLRAGMRT 317 R+RSA +R RT Sbjct: 295 RARSAIMRVAQRT 307 >gi|325571379|ref|ZP_08146879.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Enterococcus casseliflavus ATCC 12755] gi|325155855|gb|EGC68051.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Enterococcus casseliflavus ATCC 12755] Length = 331 Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 118/331 (35%), Positives = 181/331 (54%), Gaps = 19/331 (5%) Query: 1 MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS- 59 ++ K K M+ H+T V+L++ + L+ P V +D T G G+S S Sbjct: 5 LDRKRKKHMADFQHYT------VMLQETVDGLSIRPEGVYVDCTLGGAGHSEYLLSQLSE 58 Query: 60 --NVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLG 112 ++ A D+D A+ +E + Y K + ++ F L++ + GV DG+++DLG Sbjct: 59 EGHLFAFDQDQTAIDHAKERLAPYVAKGMVTFIKSNFRYLKEALNQHGVSRVDGILYDLG 118 Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASR 171 VSS Q+D +RGFS+ + PLDMRM + ++A +VVNQ + L +I GEEK + + Sbjct: 119 VSSPQLDEAERGFSYHQDAPLDMRMDQTAALTAYEVVNQFDYHQLVKIFFRYGEEKFSKQ 178 Query: 172 IAHAIVKRRQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQ 230 IA I + RQ P +TT +L +I+ + ++ HPA R FQA+RI VN+E+ + Sbjct: 179 IAREIERVRQDHPIETTGELVDIIKTAIPAPARRKGGHPAKRVFQAIRIAVNDELGVIED 238 Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRS--GKVMAVRHMIPSNAHPAVFQSI 288 L A L G + V++FHSLEDR+VK F S + MIP P + + I Sbjct: 239 SLEQAIHLLAVNGRVSVITFHSLEDRIVKSMFKEYSTPKDMPPGLPMIPEEFQPTL-KLI 297 Query: 289 TKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319 T+K ++PT+E+VA N RSRSAKLR + E Sbjct: 298 TRKPLLPTEEEVAENNRSRSAKLRIAEKIKE 328 >gi|258546144|ref|ZP_05706378.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Cardiobacterium hominis ATCC 15826] gi|258518569|gb|EEV87428.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Cardiobacterium hominis ATCC 15826] Length = 305 Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 123/310 (39%), Positives = 173/310 (55%), Gaps = 22/310 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMG--SNVIALDRDPFAVSCGQE 76 HV VLL + + L V LD TFG GG+SR+ +G + ALDRDP A Sbjct: 4 HVTVLLHEAVQALAIRADGVYLDGTFGRGGHSRAMLAALGRAGRLYALDRDPQAAEAAAG 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +F + FS+++ D G +DG++ DLGVSS Q+D RGFSF K GPL Sbjct: 64 I---DDPRFHFARCPFSRMETAFADVGAASLDGILLDLGVSSPQLDQAARGFSFGKEGPL 120 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQ--ASRIAHAIVKRRQSAPFQTTQD 190 DMRM SGI+A+D + + L R++ G E A RIA A++ R +TT D Sbjct: 121 DMRMDNESGITAADWLAATDEATLARVIRDWGGEPHTVARRIARAVIAARGK--LRTTLD 178 Query: 191 LSSLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L++++ V K HPAT++FQA+RI VN+E+ E+ +GL +A + LK+GG+L V+ Sbjct: 179 LAAVVADAVPRKLYKAG-FHPATQTFQAIRIAVNDEVGEIERGLAAATRLLKSGGVLAVI 237 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRS 306 +FH LED LVK+F + G + IPS AH V + V P+ +VA N RS Sbjct: 238 TFHGLEDALVKRFIRAHEGAPLPAE--IPS-AHDRVNPLLRLVPPAVKPSAREVADNPRS 294 Query: 307 RSAKLRAGMR 316 RSA+LR ++ Sbjct: 295 RSARLRKAVK 304 >gi|170700174|ref|ZP_02891192.1| S-adenosyl-methyltransferase MraW [Burkholderia ambifaria IOP40-10] gi|172059541|ref|YP_001807193.1| S-adenosyl-methyltransferase MraW [Burkholderia ambifaria MC40-6] gi|263446887|sp|B1YSR6|RSMH_BURA4 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|170134906|gb|EDT03216.1| S-adenosyl-methyltransferase MraW [Burkholderia ambifaria IOP40-10] gi|171992058|gb|ACB62977.1| S-adenosyl-methyltransferase MraW [Burkholderia ambifaria MC40-6] Length = 313 Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 117/312 (37%), Positives = 180/312 (57%), Gaps = 21/312 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VLL++ + L P + +D TFG GG+SR+ +IA D+DP A+ Q Sbjct: 7 HRTVLLDEAVESLVTRPDGIYVDGTFGRGGHSRAVLARLAEAGRLIAFDKDPRAIETAQ- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 R +FS+ +F+ ++D + +G++ GV+ DLGVSS Q+D RGFSF+ GPL Sbjct: 66 --RIEDARFSIVHDSFASMRDALAARGIEKVSGVLLDLGVSSPQVDDPARGFSFRADGPL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTT 188 DMRM + G SA++ + +A+V++LT ++ GEE+ A +IA A+V RR + P TT Sbjct: 124 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDTT 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ ++ V + + PATR+FQA+RI VN E+ +L L +A L+ GG L+V+ Sbjct: 184 GELAQIVGHVVKTREKGK-DPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVI 242 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNRR 305 SFHSLEDR+VK+F + + AV +P A S K++ P++ +V N R Sbjct: 243 SFHSLEDRIVKRFMQAHA-SAPAVDRRLPIRA--VDLPSPPLKIISRQFPSEAEVVANPR 299 Query: 306 SRSAKLRAGMRT 317 +RSA +R R Sbjct: 300 ARSAVMRIAERV 311 >gi|71894357|ref|YP_278465.1| S-adenosyl-methyltransferase [Mycoplasma synoviae 53] gi|88909204|sp|Q4A667|RSMH_MYCS5 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|71851145|gb|AAZ43754.1| S-adenosyl-methyltransferase [Mycoplasma synoviae 53] Length = 301 Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 111/302 (36%), Positives = 171/302 (56%), Gaps = 17/302 (5%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQ 75 +H+PVLL +V+ L + +D T G GG+S+ K +IA D+D FA+ Sbjct: 3 NNHIPVLLNEVLDNLALKENGIYIDLTLGMGGHSKEILKRIPKGKLIAFDKDDFAIKNAS 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +T+ + F + ++ F ++ + + G VDG++ DLG+SS QID +RGFS+ K+ Sbjct: 63 KTLSEVANNFEIIKSDFKDFKEELSNLGIYKVDGILADLGISSPQIDNAERGFSYLKNSA 122 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S +SA DVVN V+ L IL GE K IA I++ R P TT +L Sbjct: 123 LDMRMDQSQKLSAYDVVNLYPVEKLEYILKTYGEVKNYKYIASKIIEAR---PINTTLEL 179 Query: 192 SSLIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 ++LI K+V K ++ +PA FQA+RI VNNE++ + Q L S E LK L+++SF Sbjct: 180 ANLI-KSVTPQKLLKLKNPAKNVFQAIRIEVNNELDSIHQMLSSVEDLLKVNASLLIISF 238 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLED++VK +F + + +PS + + + P+++++ N RS+SAK Sbjct: 239 HSLEDKIVKNYFQELT------KPKLPSKMPIQEDKFFATRRIYPSKQELNLNSRSKSAK 292 Query: 311 LR 312 LR Sbjct: 293 LR 294 >gi|257899142|ref|ZP_05678795.1| methyltransferase [Enterococcus faecium Com15] gi|293571737|ref|ZP_06682756.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium E980] gi|257837054|gb|EEV62128.1| methyltransferase [Enterococcus faecium Com15] gi|291608194|gb|EFF37497.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium E980] Length = 319 Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 115/306 (37%), Positives = 177/306 (57%), Gaps = 16/306 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H V+L++ + LN P V +D T G G+S S ++ A D+D A+ + Sbjct: 7 HYTVMLKETVDGLNIKPDGVYVDCTLGGAGHSEYLLSQLSSKGHLYAFDQDQKAIDHAKL 66 Query: 77 TMRDYKEQ--FSLFQATFSQLQD----YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + Y EQ + +A F +L++ YV DK VDG+++DLGVSS Q+D +RGFS+ + Sbjct: 67 RLASYVEQGMVTFIKANFRELEERLSEYV-DK-VDGILYDLGVSSPQLDEAERGFSYHQD 124 Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM S ++A V+N+ + +L +I GEEK + +IA I + R++ P QTT Sbjct: 125 APLDMRMDQSAPLTAYHVINEYSYHELVKIFFRYGEEKFSKQIAREIERVRKTKPIQTTG 184 Query: 190 DLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I++ + ++ HPA R FQA+RI VN+E+ L A + LK G + V+ Sbjct: 185 ELVEIIKQVIPAPARRKGGHPAKRIFQAVRIAVNDELGAEEASLEQAIRLLKVNGRISVI 244 Query: 249 SFHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 +FHSLEDR+VK F S + +IP P + + IT+K ++P++E++A N RS Sbjct: 245 TFHSLEDRIVKSMFKEYSTVQDLPPGLPVIPDEFQPEL-KVITRKPILPSEEELAENNRS 303 Query: 307 RSAKLR 312 RSAKLR Sbjct: 304 RSAKLR 309 >gi|227891048|ref|ZP_04008853.1| S-adenosyl-methyltransferase [Lactobacillus salivarius ATCC 11741] gi|227867137|gb|EEJ74558.1| S-adenosyl-methyltransferase [Lactobacillus salivarius ATCC 11741] Length = 323 Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 111/305 (36%), Positives = 174/305 (57%), Gaps = 13/305 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYS-RSFCKMGSN--VIALDRDPFAVSCGQE 76 H+ VLL + + LN P +D T G GG+S K+ N + + D+D A++ ++ Sbjct: 15 HITVLLNEAVDGLNIKPDGTYVDCTLGGGGHSGLILSKLSENGKLYSFDQDITAINFNKD 74 Query: 77 TMRDYKE--QFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++ E + + ++ F + + + + GVDG+++DLGVSS Q D DRGFS+ Sbjct: 75 KFKEENELGKINFIKSNFRNISEELNKRNILGVDGILYDLGVSSPQFDNADRGFSYNYDA 134 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S ++A DVVN + + L RI GEEK A IA I K RQ P +TT Sbjct: 135 PLDMRMDQSQSLTARDVVNDWSYEQLVRIFFRYGEEKFAKSIARRIEKVRQQTPIETTGQ 194 Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L LI++ + ++ HPA ++FQA+RI VN+E+ L + L A L GG + V++ Sbjct: 195 LVDLIKEAIPAKARRKGGHPAKKTFQAIRIAVNDELGALEESLEQALDLLNPGGRISVIT 254 Query: 250 FHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 F SLEDRLVK F ++ ++ +IP ++ ++ IT+K +VP+++++ N R+ Sbjct: 255 FQSLEDRLVKVMFKQKTSLPELPPGLPVIP-DSQKVEYKLITRKPIVPSEDEITHNNRAH 313 Query: 308 SAKLR 312 SAKLR Sbjct: 314 SAKLR 318 >gi|227893331|ref|ZP_04011136.1| S-adenosyl-methyltransferase [Lactobacillus ultunensis DSM 16047] gi|227864746|gb|EEJ72167.1| S-adenosyl-methyltransferase [Lactobacillus ultunensis DSM 16047] Length = 330 Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 115/308 (37%), Positives = 174/308 (56%), Gaps = 17/308 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGS-NVIALDRDPFAVSCGQET 77 H VLL + I L P G + +DATFG GG++R K+ S ++ D+D +A+ + Sbjct: 20 HTSVLLHETIDNLKPKDGGLYVDATFGGGGHARYLLSKIDSGTLVGFDQDEYAIKSAKLN 79 Query: 78 MRDYKE-----QFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 D E + L FS LQ+ + + G+DG+ +DLGVSS Q D DRGFS++ Sbjct: 80 FADLLEPDSEPKLKLVHDNFSNLQNDLVELGYTDGIDGIYYDLGVSSPQFDQADRGFSYR 139 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + LDMRM S + A +VN + K+L IL G+EK + +IAH I++RR+ P T Sbjct: 140 YNARLDMRMDQSQDLDAYQLVNDLSQKELADILYQYGDEKFSRQIAHRIIERRKDKPIVT 199 Query: 188 TQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T +L +I+ + +++ HPA +SFQALR+ VN E++ L L A K L+ GG + Sbjct: 200 TFELVDIIKDAIPAYARRTGGHPAKKSFQALRVAVNRELDVLQASLEEAIKILRPGGRIS 259 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 V++F S ED++VKK F S +V R M +P + P + + +K + + ++ N Sbjct: 260 VITFQSHEDKIVKKIFKKYS-EVEIPRGMPFVPDDLKP-MLCLVNRKPITASTSELENNN 317 Query: 305 RSRSAKLR 312 RSRSAKLR Sbjct: 318 RSRSAKLR 325 >gi|260655421|ref|ZP_05860909.1| S-adenosyl-methyltransferase MraW [Jonquetella anthropi E3_33 E1] gi|260629869|gb|EEX48063.1| S-adenosyl-methyltransferase MraW [Jonquetella anthropi E3_33 E1] Length = 303 Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 111/308 (36%), Positives = 172/308 (55%), Gaps = 22/308 (7%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDY 81 +L++V+ P +++DAT G GGYS +F V +D+D A + QE + + Sbjct: 1 MLQEVMDSFPRPPVGLVVDATLGLGGYSEAFLSRWPECRVAGIDQDGQARAIAQERLARW 60 Query: 82 KEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138 ++F+++ F +L D + G GVV DLGVS++QI G+RGFSF++ GPLDMRM+ Sbjct: 61 ADRFAVWPGNFRRLNDLMASHGEKEAAGVVVDLGVSNLQITEGERGFSFREDGPLDMRMN 120 Query: 139 CS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK 197 S G++AS +VNQ +L I GEE+ A IA AI +RR + +TT L +I++ Sbjct: 121 ASEGLTASQLVNQMTEDELAGIFFRYGEERFARSIARAIARRRGQSSIETTGQLVEVIRE 180 Query: 198 TVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + + + HPA R FQALRI VN+E+ L L L GG+ + V++HSLED Sbjct: 181 GMPAAAQRKANGHPARRVFQALRIAVNDELGALEDLLSQVCGLLADGGVFVAVTYHSLED 240 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 RLVK+ G+ + + ++++ + P++++V N +SRSA+LRA Sbjct: 241 RLVKRAMREWEGQWLGI--------------PVSRRGLTPSEDEVLSNPKSRSARLRAFE 286 Query: 316 RTVERSIE 323 R IE Sbjct: 287 RRDNYQIE 294 >gi|220918988|ref|YP_002494292.1| S-adenosyl-methyltransferase MraW [Anaeromyxobacter dehalogenans 2CP-1] gi|263446697|sp|B8J8E0|RSMH_ANAD2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|219956842|gb|ACL67226.1| S-adenosyl-methyltransferase MraW [Anaeromyxobacter dehalogenans 2CP-1] Length = 310 Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 116/299 (38%), Positives = 172/299 (57%), Gaps = 5/299 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H PVL +++ LL P PG++ LD T G GG+S + G+ VIALD+DP A++ + Sbjct: 7 HEPVLANEILELLRPRPGELFLDGTLGGGGHSGLLLEAGARVIALDKDPRALAAATARLA 66 Query: 80 DYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + E F ++ F ++ + G VDG + DLGVSS Q+D +RGFSF + GPLDMR Sbjct: 67 RFGEAFRAVRSDFRDAKNVLEALGIAAVDGALVDLGVSSPQLDEAERGFSFSRPGPLDMR 126 Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQTTQDLSSLI 195 M +G + D++ + + ++L RIL GEE A +A A+ ++ AP T + + Sbjct: 127 MGDTGETLEDLLRRIDERELARILREYGEEPFARPVARAVKAALETEAPLDTARLAEVVA 186 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + +RIHPATR+FQALRI VN+E+ LA L L GG +SFHSLED Sbjct: 187 GAIPRKAWPHRIHPATRTFQALRIAVNDELGALAAWLDGLPGVLAPGGRAAAISFHSLED 246 Query: 256 RLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 R+VK+ F + + + + + A F +IT+K V + E++A N R+RSA+LRA Sbjct: 247 RMVKEKFRALTQACTCPPDLPVCACGAKASFAAITRKAVKASDEEIARNPRARSARLRA 305 >gi|313632482|gb|EFR99498.1| S-adenosyl-methyltransferase MraW [Listeria seeligeri FSL N1-067] Length = 312 Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 105/303 (34%), Positives = 173/303 (57%), Gaps = 11/303 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VLL + + +L P + +DAT G G+S ++ A D+D A+ + Sbjct: 4 HETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDNAKI 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + Y ++ + ++ F +++ + ++G VDG+++DLGVSS Q+D +RGFS+ + L Sbjct: 64 KLAAYSDKVTFVKSNFRYMKEALNERGISEVDGILYDLGVSSPQLDERERGFSYHQDAAL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM ++A VVN+ + +DL RI GEEK + +IA I +RR+ P +TT +L Sbjct: 124 DMRMDREQELTAKIVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTGELV 183 Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + ++ HP R+FQA+RI VN+E+ + L A +K GG + V++FH Sbjct: 184 DIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLIKPGGRISVITFH 243 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+ K F A++ + +IP P F+ T+K +VP++E++ N R+RSA Sbjct: 244 SLEDRITKHLFQEATKGPDLPPGLPVIPDEYKPD-FKLATRKPIVPSEEELEQNNRARSA 302 Query: 310 KLR 312 KLR Sbjct: 303 KLR 305 >gi|313905185|ref|ZP_07838553.1| S-adenosyl-methyltransferase MraW [Eubacterium cellulosolvens 6] gi|313469938|gb|EFR65272.1| S-adenosyl-methyltransferase MraW [Eubacterium cellulosolvens 6] Length = 326 Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 109/302 (36%), Positives = 164/302 (54%), Gaps = 9/302 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VLL + I L P + +D T G GG+S CK G +I +D+D A+ Q Sbjct: 5 HKSVLLTETIDHLAIKPEGIYVDGTLGGGGHSYEICKRLSGGGRLIGIDQDEDAIRAAQA 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + YK++ ++ + + + + + GV DG++ DLGVSS Q+D +RGF++++ L Sbjct: 65 RLAKYKDRVTILRGNYRNMVQMLAEIGVTSVDGILLDLGVSSYQLDTAERGFTYREDTRL 124 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM SA DVVN + L +++ GEEK A IA I RQ P +TT +L+ Sbjct: 125 DMRMDRRQPFSAFDVVNSYTKEKLYQVIRDYGEEKFAENIAKHICLERQKKPVETTGELA 184 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + + N HPA R+FQA+RI VN E++ L L L GG L V++FH Sbjct: 185 EIIKGAIPAKLRANGGHPAKRTFQAIRIEVNAELDVLKDSLDGMIDILNDGGRLCVITFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK F + + + ++T+K +VPT E++ FN RS+S+K Sbjct: 245 SLEDRIVKNNFRRNENPCICPPQFPVCVCGKKSKGSTVTRKPIVPTAEEMEFNPRSKSSK 304 Query: 311 LR 312 LR Sbjct: 305 LR 306 >gi|197124208|ref|YP_002136159.1| S-adenosyl-methyltransferase MraW [Anaeromyxobacter sp. K] gi|263446708|sp|B4UER3|RSMH_ANASK RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|196174057|gb|ACG75030.1| S-adenosyl-methyltransferase MraW [Anaeromyxobacter sp. K] Length = 310 Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 116/299 (38%), Positives = 172/299 (57%), Gaps = 5/299 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H PVL +++ LL P PG++ LD T G GG+S + G+ VIALD+DP A++ + Sbjct: 7 HEPVLANEILELLRPRPGELFLDGTLGGGGHSGLLLEAGARVIALDKDPRALAAATARLA 66 Query: 80 DYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + E F ++ F ++ + G VDG + DLGVSS Q+D +RGFSF + GPLDMR Sbjct: 67 RFGEAFRAVRSDFRDAKNVLQALGIAAVDGALVDLGVSSPQLDEAERGFSFSRPGPLDMR 126 Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQTTQDLSSLI 195 M +G + D++ + + ++L RIL GEE A +A A+ ++ AP T + + Sbjct: 127 MGDTGETLEDLLRRIDERELARILREYGEEPFARPVARAVKAALETEAPLDTARLAEVVA 186 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + +RIHPATR+FQALRI VN+E+ LA L L GG +SFHSLED Sbjct: 187 GAIPRKAWPHRIHPATRTFQALRIAVNDELGALAAWLDGLPGVLAPGGRAAAISFHSLED 246 Query: 256 RLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 R+VK+ F + + + + + A F +IT+K V + E++A N R+RSA+LRA Sbjct: 247 RMVKEKFRALTQACTCPPDLPVCACGAKASFAAITRKAVKASDEEIARNPRARSARLRA 305 >gi|197294245|ref|YP_001798786.1| S-adenosyl-methyltransferase MraW [Candidatus Phytoplasma australiense] gi|262824821|sp|B1V910|RSMH_PHYAS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|171853572|emb|CAM11442.1| S-adenosyl-methyltransferase [Candidatus Phytoplasma australiense] Length = 303 Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 117/306 (38%), Positives = 173/306 (56%), Gaps = 14/306 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H+ VL E+ I+ LN P V +DAT G GG++ S + + + D+D A S Q+ Sbjct: 5 HISVLKEEAISFLNINPNGVYVDATLGQGGHTLSILNHLQDGFLYSFDQDLKACSDIQKK 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + + + FS L+ + + V DG++FDLG+SS QID RGFS+ + PLD Sbjct: 65 LNP-NWPIEIIHSNFSNLKLELAKRNVFQLDGILFDLGISSCQIDDSQRGFSYLHNAPLD 123 Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MR ++A ++VN + + L I I GEEK+A+ IA I+K R P +T+ DL + Sbjct: 124 MRFDNRQKLTAQEIVNFYSFEKLKNIFHIYGEEKKAALIAKQIIKNR---PLKTSYDLVA 180 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 + T F K ++ H A + FQALRI VN E+E L Q L + + LK G ++V+SFHSL Sbjct: 181 I---TDMFYKYHKGHSAKKIFQALRIEVNQELEVLKQALSQSLELLKKDGSIVVISFHSL 237 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHP-AVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 EDR+VK FF S + I S +P + ITKK +P++ ++ N RS SAKLR Sbjct: 238 EDRIVKHFFKKNSVFEFPKKLPIMSVDYPQPALRIITKKPCIPSEVEMKNNPRSISAKLR 297 Query: 313 AGMRTV 318 A ++ + Sbjct: 298 AAVKNI 303 >gi|326382552|ref|ZP_08204243.1| S-adenosyl-methyltransferase MraW [Gordonia neofelifaecis NRRL B-59395] gi|326198671|gb|EGD55854.1| S-adenosyl-methyltransferase MraW [Gordonia neofelifaecis NRRL B-59395] Length = 339 Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 113/315 (35%), Positives = 172/315 (54%), Gaps = 27/315 (8%) Query: 20 HVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPF 69 HVPV+ +++ ALL PA G V++D T GAGG++ F G VIA+DRD Sbjct: 11 HVPVMADRMFALLEPALTRVSADGTGAVLVDGTLGAGGHTEYFLDRLDGLYVIAIDRDTS 70 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFS 126 A+ E + + ++ + +++D V G VDGV+ DLGVSSMQ+D +RGF+ Sbjct: 71 AIGIASERLGRFGDRVEFHHNRYDEIEDVVHAAGRTVVDGVLLDLGVSSMQLDRAERGFA 130 Query: 127 FQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 + PLDMRM+ ++A+D++N + L R+L GEE+ A +IA A+V+ R PF Sbjct: 131 YAVDAPLDMRMNADDELTAADILNTYDHGALARVLSEYGEERFAGKIASAVVRERAKEPF 190 Query: 186 QTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 T+ L L+ T+ ++ HPA R+FQALRI VN+E++ L + ++ + L GG Sbjct: 191 TTSGRLVELLYATIPAATRRTGGHPAKRTFQALRIEVNHELDSLRGVIPASLEVLGIGGR 250 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSN------AHPAVFQSITKKVVVPTQE 298 L V+S+ SLEDR+VK+ FA AV + P+ F +T+ Sbjct: 251 LAVMSYQSLEDRIVKRDFAR------AVENTTPAGLPVDLPGTAPEFSLVTRGAEQADAA 304 Query: 299 DVAFNRRSRSAKLRA 313 + A N RS ++RA Sbjct: 305 ERAANPRSAPVRIRA 319 >gi|329766778|ref|ZP_08258308.1| ribosomal RNA small subunit methyltransferase H [Gemella haemolysans M341] gi|328839289|gb|EGF88871.1| ribosomal RNA small subunit methyltransferase H [Gemella haemolysans M341] Length = 311 Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 109/304 (35%), Positives = 168/304 (55%), Gaps = 10/304 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H VLL + + LN + +D T G G+S K N + A D+D A+ + Sbjct: 4 HYSVLLNEAVEGLNIIEDGIYVDCTLGGAGHSLEILKQLKNGKLYAFDQDNIALENAKNK 63 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + +Y ++ ++ F L++ + + GV DGV++DLGVSS Q+D +RGFS+ LD Sbjct: 64 LAEYSDKVVFIKSNFVNLKEKLAEHGVHEVDGVLYDLGVSSPQLDTPERGFSYNYDTKLD 123 Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM ISA +VVN+ + DL +I GEE + +IA I K+R+ P +TT +L Sbjct: 124 MRMDTDAKISAYEVVNEYSYHDLVKIFYRYGEENFSKQIARNIEKKREQKPIETTFELVE 183 Query: 194 LIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I++++ +K HPA R FQA+RI VNNE+ L A +K GG + V++FHS Sbjct: 184 IIKESIPAAKRRTGGHPAKRVFQAIRIAVNNELSVFEDSLEQAIDIVKVGGRISVITFHS 243 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRSAK 310 LEDR+ K+ F S + K + +P ++ + IT+K + P+ ++ N RSRSAK Sbjct: 244 LEDRICKQIFNSYA-KAKDIPKNLPIMPEESLSKLKVITRKPIYPSDIELEENNRSRSAK 302 Query: 311 LRAG 314 LR Sbjct: 303 LRVA 306 >gi|254515249|ref|ZP_05127310.1| S-adenosyl-methyltransferase MraW [gamma proteobacterium NOR5-3] gi|219677492|gb|EED33857.1| S-adenosyl-methyltransferase MraW [gamma proteobacterium NOR5-3] Length = 308 Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 117/303 (38%), Positives = 169/303 (55%), Gaps = 15/303 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H VLL + + L +P + +D TFG GG+SR K ++ D FA +E R Sbjct: 5 HETVLLHEAVDSLVSSPAGLYVDGTFGRGGHSREILKRLND----DGRLFACDKDEEAER 60 Query: 80 DYKE------QFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 D E +FS + +F+ L + G V G++ DLGVSS Q+D +RGFSFQ Sbjct: 61 DALELAGEDGRFSFARGSFAALPALLAQHGLGPVHGILLDLGVSSPQLDQAERGFSFQHD 120 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 GPLDMRM S G SA+D + A+ +++ +L GEE+ A RIA AIV+ R P T Sbjct: 121 GPLDMRMDRSRGESAADWIASASEQEIIDVLREYGEERFARRIAGAIVRARAETPLTRTS 180 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L++++ + + ++ HPATR+FQA+RI VN E+++LA+ L A L GG L+V+S Sbjct: 181 QLAAIVSEAHPRWEKHK-HPATRAFQAIRIRVNRELDDLAELLSVALSVLAVGGRLVVIS 239 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRLVK+ S R++ + + K ++E+VA N RSRSA Sbjct: 240 FHSLEDRLVKRHLRDMSRGPQLPRNLPVRDVESGAQMRLLGKAQRASKEEVAGNPRSRSA 299 Query: 310 KLR 312 +R Sbjct: 300 IMR 302 >gi|210634276|ref|ZP_03298049.1| hypothetical protein COLSTE_01971 [Collinsella stercoris DSM 13279] gi|210158878|gb|EEA89849.1| hypothetical protein COLSTE_01971 [Collinsella stercoris DSM 13279] Length = 306 Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 117/307 (38%), Positives = 174/307 (56%), Gaps = 16/307 (5%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYS-RSFCKMGSN--VIALDRDPFAVSCGQETM-- 78 +L++V+ L + G V D T G G+S R ++G+ ++ +D+D A+ + + Sbjct: 1 MLQEVLEQLQLSAGSVACDCTLGGAGHSVRMAAQVGTEGLLLGIDQDDMALEAAGKRLDA 60 Query: 79 RDYKEQFSLFQATFSQLQDY-----VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 L + F L + VP GVDG +FDLGVSS Q+D RGFS+ + PL Sbjct: 61 EAPGTPHKLLKGNFGDLDELLCSAQVP--GVDGFLFDLGVSSPQLDIPGRGFSYNEDAPL 118 Query: 134 DMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 DMRM + ++A++V+N DL RIL I GEEK A +IA IV+RRQ AP TT D Sbjct: 119 DMRMDPGTNTLNAAEVLNTYTEADLARILRIYGEEKFARQIAREIVRRRQVAPLATTGDF 178 Query: 192 SSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+ + ++ + HPA RSFQA+RI VN+E++ L +GL +A + L G + V+S+ Sbjct: 179 VDVIKAGIPAAARRHGGHPAKRSFQAIRIEVNHELDVLERGLEAAVRWLNPSGRVCVISY 238 Query: 251 HSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK+ F S G + + + + T+K +V T E+VA N R+RSA Sbjct: 239 HSLEDRIVKRLFQELSQGCTCPPDIPVCVCGNVPIVKVTTRKPLVATAEEVARNPRARSA 298 Query: 310 KLRAGMR 316 K+R R Sbjct: 299 KIRCAER 305 >gi|186685061|ref|YP_001868257.1| S-adenosyl-methyltransferase MraW [Nostoc punctiforme PCC 73102] gi|262824674|sp|B2J183|RSMH_NOSP7 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|186467513|gb|ACC83314.1| S-adenosyl-methyltransferase MraW [Nostoc punctiforme PCC 73102] Length = 298 Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 117/304 (38%), Positives = 169/304 (55%), Gaps = 28/304 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 H+ VL +VI L PG LD T G GG+SR + ++V A+D+D A+ + Sbjct: 18 HISVLGREVIEGLAVRPGGHYLDVTVGGGGHSRLILEAAADVRVTAVDQDEDALVAANKN 77 Query: 78 MRDYKEQFSLFQATFSQLQDY-VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + +Y ++ Q +S DY P DG++ DLGVSS +D +RGFSF+++ LDMR Sbjct: 78 LAEYSDRI---QFIYSNFADYEFPPNTFDGILADLGVSSYHLDQAERGFSFRQAANLDMR 134 Query: 137 MS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M ++A+DV+N + +L I GEE+ + RIA IV+RR P TT +L+ I Sbjct: 135 MDRGRSLTAADVINNWDEAELADIFFKYGEERLSRRIARRIVERR---PLHTTTELADAI 191 Query: 196 QKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 +V + RIHPATR FQALRI VN+E++ L L A AL GG + ++SFHSLE Sbjct: 192 ASSVPPKYRYGRIHPATRVFQALRIVVNDELKSLETFLDKAPNALVPGGRIAIISFHSLE 251 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 DR VK R+ ++ V +TKK ++ +E+++ N RSRSAKLR Sbjct: 252 DRPVKHGL--RNSPLLKV---------------LTKKPIIAQEEEISNNPRSRSAKLRIA 294 Query: 315 MRTV 318 + V Sbjct: 295 EKLV 298 >gi|307564714|ref|ZP_07627244.1| S-adenosyl-methyltransferase MraW [Prevotella amnii CRIS 21A-A] gi|307346642|gb|EFN91949.1| S-adenosyl-methyltransferase MraW [Prevotella amnii CRIS 21A-A] Length = 318 Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 118/311 (37%), Positives = 175/311 (56%), Gaps = 15/311 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFA---VSC 73 HVPVLL++ + LN G + +D TFG GG+SR S +++ + D+D A + Sbjct: 9 HVPVLLKESVDGLNIRKGGIYVDVTFGGGGHSREILSHLSGDAHLYSFDQDLDAEQNIKY 68 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQ-K 129 E+ ++ ++F+ ++ F L++++ GVD G++ DLGVSS D +RGFSF+ Sbjct: 69 LTESDKELSKKFTFVRSNFRYLKNWMRYYGVDKIDGLIADLGVSSHHFDDENRGFSFRFD 128 Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM+ SG A DV+N +DL R+ + GE KQ+ RIA AIVK R + +TT Sbjct: 129 DAPLDMRMNKESGKQAFDVLNDYKEEDLARLFYVYGELKQSKRIAAAIVKGRANKAIRTT 188 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 D ++ +F + + FQALRI VN E++ L + L SA + L GG L V+ Sbjct: 189 TDFLKIVNP--FFMRVREKKDMAKLFQALRIEVNQEMQALTKMLTSAIELLAPGGRLSVI 246 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 ++HSLEDRLVK F S + + + P F+ + KV++ T E++ N RSRS Sbjct: 247 TYHSLEDRLVKNFMKSGNAEGKISQDFFGRIKTP--FKLVNNKVIIATDEEIERNPRSRS 304 Query: 309 AKLRAGMRTVE 319 AKLR R E Sbjct: 305 AKLRIAERKHE 315 >gi|289435382|ref|YP_003465254.1| S-adenosyl-methyltransferase [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171626|emb|CBH28172.1| S-adenosyl-methyltransferase [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 312 Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 105/303 (34%), Positives = 173/303 (57%), Gaps = 11/303 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VLL + + +L P + +DAT G G+S ++ A D+D A+ + Sbjct: 4 HETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDNAKI 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + Y ++ + ++ F +++ + ++G VDG+++DLGVSS Q+D +RGFS+ + L Sbjct: 64 KLAAYSDKVTFVKSNFRYMKEALNERGISEVDGILYDLGVSSPQLDERERGFSYHQDAAL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM ++A VVN+ + +DL RI GEEK + +IA I +RR+ P +TT +L Sbjct: 124 DMRMDREQELTAKIVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTGELV 183 Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + ++ HP R+FQA+RI VN+E+ + L A +K GG + V++FH Sbjct: 184 DIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALSLIKPGGRISVITFH 243 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+ K F A++ + +IP P F+ T+K +VP++E++ N R+RSA Sbjct: 244 SLEDRITKHLFQEATKGPDLPPGLPVIPDEYKPD-FKLATRKPIVPSEEELEQNNRARSA 302 Query: 310 KLR 312 KLR Sbjct: 303 KLR 305 >gi|170078284|ref|YP_001734922.1| S-adenosyl-methyltransferase [Synechococcus sp. PCC 7002] gi|262825754|sp|B1XP73|RSMH_SYNP2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|169885953|gb|ACA99666.1| S-adenosyl-methyltransferase [Synechococcus sp. PCC 7002] Length = 290 Score = 180 bits (457), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 112/298 (37%), Positives = 170/298 (57%), Gaps = 28/298 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 H+ VL E+++A L P LD T G GG++ + +V +DRD A++ E Sbjct: 7 HISVLKEELVAGLGVKPEGHYLDVTLGGGGHTELILQQYPDVRVTGVDRDSQAIAAASER 66 Query: 78 MRDYKEQFSLFQATFSQLQDYVPD-KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 ++ + ++F ++ F + Y P + DG++ DLGVSS+Q D GDRGFSF+ PLDMR Sbjct: 67 LKSFGDRFRAVRSNFGE---YQPQGEKFDGIIADLGVSSVQFDQGDRGFSFRFDAPLDMR 123 Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M ++A+D+VN K L + G+E+ + +IA IV +R P QTT++L ++ Sbjct: 124 MDQQQTLTAADIVNTYEEKALANLFYEYGDERLSRQIAKKIVMKR---PIQTTKELEEIV 180 Query: 196 QKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 T + ++ +IHPATR FQALRI VN E++ L L +A + LK G L ++SFHSLE Sbjct: 181 FYTYHPKARKVKIHPATRVFQALRIAVNGELDALQYLLVNAPQWLKPQGRLGIISFHSLE 240 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 DRLVK F R +++ +TKK +V ++ ++ N R+RSAKLR Sbjct: 241 DRLVKNAFRQRD-----------------IWRILTKKPMVASETEINQNPRARSAKLR 281 >gi|326803777|ref|YP_004321595.1| S-adenosyl-methyltransferase MraW [Aerococcus urinae ACS-120-V-Col10a] gi|326650961|gb|AEA01144.1| S-adenosyl-methyltransferase MraW [Aerococcus urinae ACS-120-V-Col10a] Length = 318 Score = 180 bits (457), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 117/312 (37%), Positives = 174/312 (55%), Gaps = 12/312 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQE 76 H+ VLL++ + LN +D T G GG Y S + A D+D A++ +E Sbjct: 7 HITVLLKETVDDLNVKEDGSYVDCTLGGGGHTSYLLSKLSAKGRLYAFDQDIQAINHAKE 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 D Q +L A F+QL++ + +GV DG+++DLGVSS Q+D +RGFS+++ Sbjct: 67 RFADAIAAGQLTLIHANFAQLEEQLAQRGVKQVDGILYDLGVSSPQLDDRERGFSYKQDA 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S ++A ++VN + DL RIL GEEK A IA I RRQ A T + Sbjct: 127 PLDMRMDQSQTLTAKEIVNDWSYVDLVRILKRYGEEKFAKAIARNIENRRQKAAITRTSE 186 Query: 191 LSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I++ + ++ HPA RSFQA+RI VN+E+ + L A + +K G + +S Sbjct: 187 LVEIIKEAIPAPARRKGGHPAKRSFQAIRIAVNDELGAIESSLSQALQLIKVEGRIAAIS 246 Query: 250 FHSLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 F SLEDR+VK F AS + + ++ S A F+ + KK + P+QE++ N R++ Sbjct: 247 FQSLEDRIVKVMFKEASTVDNLPSQLPLLESQLPQAKFRLVNKKPIYPSQEELDKNSRAQ 306 Query: 308 SAKLRAGMRTVE 319 SAKLR R E Sbjct: 307 SAKLRVIERVSE 318 >gi|227889751|ref|ZP_04007556.1| S-adenosyl-methyltransferase [Lactobacillus johnsonii ATCC 33200] gi|227849615|gb|EEJ59701.1| S-adenosyl-methyltransferase [Lactobacillus johnsonii ATCC 33200] Length = 322 Score = 180 bits (457), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 112/311 (36%), Positives = 178/311 (57%), Gaps = 15/311 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77 H VLL + I LNP G + +DATFG GG++R VI D+D +A+S +E+ Sbjct: 12 HKSVLLHETIDNLNPKDGGLYVDATFGGGGHARYLLSKLNKGTVIGFDQDEYAISMAKES 71 Query: 78 MRDY-----KEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + + L F L++ + + G+DG+ +DLGVSS Q D +RGFS++ Sbjct: 72 FAKELQVGAEPRLILVHDNFCHLKENLVELGISDGIDGIYYDLGVSSPQFDQPERGFSYR 131 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 LDMRM S + A +VN + K+L+ +L G+EK + +IA IV RR+ P T Sbjct: 132 FDARLDMRMDQSQELDAYTIVNTWSQKELSDVLYKYGDEKFSRQIARKIVDRRKEKPIVT 191 Query: 188 TQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T DL +I+ + +++ + HPA +SFQA+R+ VNNE+ L + L A K LK GG + Sbjct: 192 TFDLVDVIKDAIPAYARRSGGHPAKKSFQAIRVAVNNELGVLQESLEEAIKLLKPGGRIS 251 Query: 247 VVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V++F S ED++VKK F S ++ M+P+++ P + + I++K ++ + +++ N R Sbjct: 252 VITFQSHEDKIVKKIFKKYSEVEIPRGMPMVPADSKPTL-RLISRKPIMASSDELEENNR 310 Query: 306 SRSAKLRAGMR 316 S SAKLR + Sbjct: 311 SHSAKLRVAEK 321 >gi|193213705|ref|YP_001999658.1| S-adenosyl-methyltransferase MraW [Chlorobaculum parvum NCIB 8327] gi|263445798|sp|B3QLX2|RSMH_CHLP8 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|193087182|gb|ACF12458.1| S-adenosyl-methyltransferase MraW [Chlorobaculum parvum NCIB 8327] Length = 318 Score = 180 bits (457), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 109/309 (35%), Positives = 174/309 (56%), Gaps = 18/309 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM------GSNVIALDRDPFAVSC 73 H PVL + +LL PG + +D T G GG+S + S ++ +D+D +A+ Sbjct: 7 HEPVLADATTSLLVTRPG-IYIDGTLGGGGHSLELLRRLDALDGESLLVGIDQDSYALEA 65 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYV------PDKGVD--GVVFDLGVSSMQIDCGDRGF 125 + ++D+ ++ L + FS +++ + P +G++ G++ DLGVSS QID RGF Sbjct: 66 AGQKLQDFGDKAILLRGNFSMVRELLAPVKRGPGEGLEVMGLLLDLGVSSFQIDTPVRGF 125 Query: 126 SFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 S+ + GPLDMRM G ++A+D+VN + L R+ GEE RIA A+V R AP Sbjct: 126 SYLRDGPLDMRMDPDGPLTAADIVNDYEEQALARLFFRYGEEAHGGRIARAVVSARSVAP 185 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 TT L+ ++++ K++ I +R +QALRI VN+E+ L Q L L GG Sbjct: 186 ITTTGGLAEVVRRACP-RKDSPIKTLSRIYQALRIEVNDELGVLQQALEDGFAVLSPGGR 244 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFN 303 V+S+HSLEDR+VK+FF++R + + + PA + +T+K V + +V+ N Sbjct: 245 FAVISYHSLEDRIVKRFFSARCTADWGPKGLPLREPLKPAEAELVTRKSVQAGEAEVSRN 304 Query: 304 RRSRSAKLR 312 R+RSA+LR Sbjct: 305 PRARSARLR 313 >gi|288929756|ref|ZP_06423599.1| S-adenosyl-methyltransferase MraW [Prevotella sp. oral taxon 317 str. F0108] gi|288328857|gb|EFC67445.1| S-adenosyl-methyltransferase MraW [Prevotella sp. oral taxon 317 str. F0108] Length = 319 Score = 180 bits (456), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 115/309 (37%), Positives = 175/309 (56%), Gaps = 19/309 (6%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMG--SNVIALDRDPFAVSC- 73 G HVPVLL + + LN G V +D TFG GG++R KM + + + D+D A Sbjct: 11 GYHVPVLLAESVEALNIVEGGVYVDVTFGGGGHTRHILSKMDGTARLFSFDQDADAEENT 70 Query: 74 ------GQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRG 124 GQ+ + + E+F+ ++ F L +++ GVD G++ DLGVSS D +RG Sbjct: 71 RRKSPDGQQPLAN-DERFTFVRSNFRYLDNWMRYYGVDHVDGILADLGVSSHHFDDQERG 129 Query: 125 FSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 FSF+ PLDMRM+ + ++A+ V+N + + L + + GE +Q+ RIA AIVK R A Sbjct: 130 FSFRFDAPLDMRMNKNAALTAAQVLNTYDEERLADVFFLYGEIRQSRRIASAIVKARAKA 189 Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 QTTQ +++++ +F + + FQALRI VNNE+ L + L++A + L GG Sbjct: 190 AVQTTQQFAAIVEP--FFKREREKKEMAKLFQALRIEVNNEMNALKEMLQAAAQWLGKGG 247 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 L V+++HSLEDR+VK F + + + + P F + KV+VPT ++ N Sbjct: 248 RLSVITYHSLEDRMVKNFMKTGNVEGKLSQDFFGRAQTP--FTLVNNKVIVPTDDEQLRN 305 Query: 304 RRSRSAKLR 312 RSRSAKLR Sbjct: 306 PRSRSAKLR 314 >gi|90962030|ref|YP_535946.1| S-adenosyl-methyltransferase MraW [Lactobacillus salivarius UCC118] gi|122448863|sp|Q1WT95|RSMH_LACS1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|90821224|gb|ABD99863.1| S-adenosyl-methyltransferase [Lactobacillus salivarius UCC118] gi|300214731|gb|ADJ79147.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Lactobacillus salivarius CECT 5713] Length = 314 Score = 180 bits (456), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 111/305 (36%), Positives = 173/305 (56%), Gaps = 13/305 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYS-RSFCKMGSN--VIALDRDPFAVSCGQE 76 H+ VLL + + LN P +D T G GG+S K+ N + + D+D A++ ++ Sbjct: 6 HITVLLNEAVDGLNIKPDGTYVDCTLGGGGHSGLILSKLSENGKLYSFDQDITAINFNKD 65 Query: 77 TMRDYKE--QFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + E + + ++ F + + + + GVDG+++DLGVSS Q D DRGFS+ Sbjct: 66 KFEEENELGKINFIKSNFRNISEELNKRNILGVDGILYDLGVSSPQFDNADRGFSYNYDA 125 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S ++A DVVN + + L RI GEEK A IA I K RQ P +TT Sbjct: 126 PLDMRMDQSQSLTARDVVNDWSYEQLVRIFFRYGEEKFAKSIARRIEKVRQQTPIETTGQ 185 Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L LI++ + ++ HPA ++FQA+RI VN+E+ L + L A L GG + V++ Sbjct: 186 LVDLIKEAIPAKARRKGGHPAKKTFQAIRIAVNDELGALEESLEQALDLLNPGGRISVIT 245 Query: 250 FHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 F SLEDRLVK F ++ ++ +IP ++ ++ IT+K +VP+++++ N R+ Sbjct: 246 FQSLEDRLVKVMFKQKTSLPELPPGLPVIP-DSQKVEYKLITRKPIVPSEDEITHNNRAH 304 Query: 308 SAKLR 312 SAKLR Sbjct: 305 SAKLR 309 >gi|319764380|ref|YP_004128317.1| s-adenosyl-methyltransferase mraw [Alicycliphilus denitrificans BC] gi|317118941|gb|ADV01430.1| S-adenosyl-methyltransferase MraW [Alicycliphilus denitrificans BC] Length = 308 Score = 180 bits (456), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 123/306 (40%), Positives = 174/306 (56%), Gaps = 16/306 (5%) Query: 20 HVPVLL-EKVIALLN--PAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSC 73 H VL E V ALL AP +D TFG GG++R ++G+ ++A D+DP A+ Sbjct: 7 HTTVLASEAVDALLGGAAAPVGTFVDGTFGRGGHARLILQRLGAQGRLVAFDKDPEAI-- 64 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 E R + +FS+ FS L + +P V GV+ DLG+SS QID RGFSF+ GPL Sbjct: 65 -HEAARIHDARFSIRHQGFSHLGE-LPAASVAGVLLDLGISSPQIDDPARGFSFRFDGPL 122 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR-QSAPFQTTQDL 191 DMRM + G S ++ + A + ++ GEE+ A IA AIV RR Q P T +L Sbjct: 123 DMRMDTTRGQSVAEWLAGAEAAQIAEVIRDYGEERFAGPIAKAIVARRTQGGPIVGTAEL 182 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ V + + +PATR+FQA RIF+N E+EEL Q L ++ L GG L+V+SFH Sbjct: 183 ADIVAGAVKTREPGQ-NPATRTFQAFRIFINAELEELQQALEASLTVLAPGGRLVVISFH 241 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+VK+F A R K M R + P +++ + V P+ +V N R+RSA + Sbjct: 242 SLEDRIVKQFIA-RHSKEMFDRRAPFAAPTPMRLKALGR--VKPSAAEVVANPRARSAVM 298 Query: 312 RAGMRT 317 R RT Sbjct: 299 RVAERT 304 >gi|296125293|ref|YP_003632545.1| S-adenosyl-methyltransferase MraW [Brachyspira murdochii DSM 12563] gi|296017109|gb|ADG70346.1| S-adenosyl-methyltransferase MraW [Brachyspira murdochii DSM 12563] Length = 311 Score = 180 bits (456), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 97/298 (32%), Positives = 169/298 (56%), Gaps = 16/298 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H PV+L++V++ + P K+++DAT G GG++++ + V + +RD + + ++ Sbjct: 20 HTPVMLKEVLSYI-PENAKIVIDATLGEGGHTKAMLDLNLEVHSFERDSTILDIAKRRLK 78 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 DY F + T+ ++ + + +K + D +++DLGVS +RGFSF+ + LDMR Sbjct: 79 DYP-NFHYYNNTYDKMMECLDEKVIGNADFMLYDLGVSLFHFKKAERGFSFKDNTMLDMR 137 Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI- 195 + + SA DV+N + ++L R+ GE A ++A IVK R +T+++L S+I Sbjct: 138 LGINEKSAYDVINGYSEEELERVFRDYGELSNARKMARIIVKERDKRKIETSKELESIIF 197 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 T + +IHPAT FQA+RI VN+E+ L + + + LK G+ +++S+HSLED Sbjct: 198 HNTDKSQRYGKIHPATLVFQAIRIEVNDELNILEKSILNIPNILKNNGVAVIISYHSLED 257 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 R+VK+FF + +F+ + KV +PT +++ N SRSAK+RA Sbjct: 258 RIVKRFFKENE----------KTKNKDGIFKLLNNKVKLPTNDEIKSNPASRSAKMRA 305 >gi|325198906|gb|ADY94362.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis G2136] Length = 316 Score = 180 bits (456), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 112/287 (39%), Positives = 165/287 (57%), Gaps = 10/287 (3%) Query: 39 VILDATFGAGGYSR-SFCKMG--SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95 V +D TFG GG+SR ++G +I D+DP A++ +E R K + + F+ Sbjct: 16 VYVDGTFGRGGHSRLILSRLGDAGRLIVFDKDPQAIAVAEELARSDK-RVGVVHGGFASF 74 Query: 96 QDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQA 151 Q + G VDG +FDLG+SS QID G RGFSF+ PLDMRM + G+SA++ + A Sbjct: 75 QAALDGLGIGKVDGALFDLGISSPQIDDGSRGFSFRFDAPLDMRMDTTRGMSAAEWIAVA 134 Query: 152 NVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPAT 211 + +DL ++ GEE+ + +IA AIV +R +P TT+ L+ ++ + V + + PAT Sbjct: 135 SEQDLHEVIKNYGEERFSRQIARAIVAQRAESPIDTTRKLAQIVAQNVRTRERGQ-DPAT 193 Query: 212 RSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMA 271 R+FQA+RIF+N E+EE+ L LK GG L V++FHSLEDR+VK+F S Sbjct: 194 RTFQAVRIFINRELEEVGAVLPQVMCRLKEGGRLAVIAFHSLEDRIVKQFVKKYSQHAPL 253 Query: 272 VRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 R A P + I + + P + ++A N R+RSA LR RT Sbjct: 254 PRWAAVREADLPELPLKIVGRALKPGEAEIAANPRARSAVLRVAERT 300 >gi|162447417|ref|YP_001620549.1| S-adenosylmethionine-dependent methyltransferase [Acholeplasma laidlawii PG-8A] gi|263433262|sp|A9NFP3|RSMH1_ACHLI RecName: Full=Ribosomal RNA small subunit methyltransferase H 1; AltName: Full=16S rRNA m(4)C1402 methyltransferase 1; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH 1 gi|161985524|gb|ABX81173.1| S-adenosylmethionine-dependent methyltransferase [Acholeplasma laidlawii PG-8A] Length = 299 Score = 180 bits (456), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 114/299 (38%), Positives = 172/299 (57%), Gaps = 14/299 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77 H+ VLL + I LN P + +DAT G GG+S K ++ A D+D +A+ E Sbjct: 3 HISVLLNESIEGLNIKPNGIYVDATLGGGGHSLEILKKLDKGHLYAFDQDAYAIGRATER 62 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++D+ + + Q+ FS +++ + + G VDG++FDLG+SS QID RGFS+ K LD Sbjct: 63 LKDFSNK-TFIQSNFSFIKEKLNELGIYQVDGIIFDLGLSSFQIDDETRGFSYLKDYDLD 121 Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM+ ++A ++VN + L I G+E+ A +IA IV RR P TT +L Sbjct: 122 MRMNKDATLTAKEIVNTYERQKLADIFRAYGDEENAWKIAGMIVDRR---PLNTTLEL-- 176 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 ++ T +K + H A R FQALRI VN E+E L + L SA + L GG L +++F SL Sbjct: 177 -VEITDIANKGMKGHSAKRVFQALRIEVNKELEVLERALNSALELLNIGGRLSIITFQSL 235 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 ED++VK F+ + S I + P + + IT+K V+P++ ++ N RSRSAKLR Sbjct: 236 EDKMVKSFYKTHSQMDYPKNIDIRTFPKPPL-KIITRKPVLPSEIELEHNSRSRSAKLR 293 >gi|86160181|ref|YP_466966.1| S-adenosyl-methyltransferase MraW [Anaeromyxobacter dehalogenans 2CP-C] gi|123496850|sp|Q2IG17|RSMH_ANADE RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|85776692|gb|ABC83529.1| methyltransferase [Anaeromyxobacter dehalogenans 2CP-C] Length = 310 Score = 180 bits (456), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 117/299 (39%), Positives = 172/299 (57%), Gaps = 5/299 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H PVL +V+ LL P PG++ LD T G GG+S + G+ VIALD+DP A++ + Sbjct: 7 HEPVLANEVLELLRPRPGELFLDGTLGGGGHSGLLLEAGARVIALDKDPRALAAATARLA 66 Query: 80 DYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + E F ++ F ++ + G VDG + DLGVSS Q+D +RGFSF + GPLDMR Sbjct: 67 RFGEAFRAVRSDFRDAKNVLEALGIGAVDGALVDLGVSSPQLDEAERGFSFSRPGPLDMR 126 Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQTTQDLSSLI 195 M +G + D++ + + ++L RIL GEE A +A AI ++ AP T + + Sbjct: 127 MGDTGETLEDLLRRIDERELARILREYGEEPFARPVARAIKAALEAEAPLDTARLAEVVA 186 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + +RIHPATR+FQALRI VN+E+ LA L L GG +SFHSLED Sbjct: 187 GAIPRKAWPHRIHPATRTFQALRIAVNDELGALAAWLDGLPGVLAPGGRAAAISFHSLED 246 Query: 256 RLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 R+VK+ F + + + + + A F +IT+K V + +++A N R+RSA+LRA Sbjct: 247 RMVKEKFRALTQACTCPPDLPVCACGAKASFAAITRKAVKASDDEIARNPRARSARLRA 305 >gi|71891921|ref|YP_277651.1| S-adenosyl-dependent methyl transferase [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|88909187|sp|Q493Q9|RSMH_BLOPB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|71796027|gb|AAZ40778.1| S-adenosyl-dependent methyl transferase [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 329 Score = 180 bits (456), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 114/317 (35%), Positives = 186/317 (58%), Gaps = 22/317 (6%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPF 69 IH++ H VLL + I LN + +D TFG+GG+S+ S ++A+D+D Sbjct: 15 IHYS---HKSVLLNEAIQSLNIKATGMYIDGTFGSGGHSKLILSQLNKRGRLLAIDKDLL 71 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGF 125 AV G+ + + ++F++ ++FS++ ++V + G VDG++ DLG+S+ QI+ RGF Sbjct: 72 AVKIGKH-IAEQDDRFTIIHSSFSKMINHVKNIGLIGSVDGILLDLGISTFQINDCSRGF 130 Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF + G LDMRM S GISA++ +++A+ +++T +L GEE+ A IA +V +R+ P Sbjct: 131 SFMQDGLLDMRMDISSGISAAEWLSKASQENITWVLKNFGEERFAKNIAKILVSKRRYTP 190 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 + LS LI + N+ HPAT+SF A+R+F+NNE+EE+ Q L+ A L G Sbjct: 191 IIRSIVLSKLICDAIPHRNMNK-HPATKSFLAIRMFINNELEEIMQVLKDALIILSPRGR 249 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV-------VVPTQ 297 L+V+SF+SLEDRLVK F S +++ +P + +F K + P++ Sbjct: 250 LVVISFNSLEDRLVKYFIREHSC-ALSIPPKLPL-TNNQIFSKYKNKCQLKNIGKLTPSK 307 Query: 298 EDVAFNRRSRSAKLRAG 314 +++ N R+RSA LR Sbjct: 308 QEIKRNIRARSAILRCA 324 >gi|319947571|ref|ZP_08021801.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus australis ATCC 700641] gi|319746259|gb|EFV98522.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus australis ATCC 700641] Length = 316 Score = 180 bits (456), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 115/320 (35%), Positives = 179/320 (55%), Gaps = 19/320 (5%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 MS HH V VLL + I +L+ P + +DAT G G+S S ++ A D Sbjct: 1 MSKEFHH-----VTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSQLSEKGHLYAFD 55 Query: 66 RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120 +D A+ ++ + Y E+ + + F LQ + + GV DG+ +DLGVSS Q+D Sbjct: 56 QDQHAIDNAEKRLAPYVEKGMVTFIKDNFRNLQARLQELGVNEIDGICYDLGVSSPQLDE 115 Query: 121 GDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 RGFS++K PLDMRM+ + ++A DVVN + DL RI GE+K + +IA I + Sbjct: 116 RSRGFSYKKDAPLDMRMNQEASLTAYDVVNNYDYHDLVRIFFKYGEDKFSKQIARKIEQA 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 R P +TT +L+ +I K+ +K + HPA + FQA+RI VN+E+ + ++ A Sbjct: 176 RAVKPIETTTELAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMD 234 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPT 296 L GG + V++FHSLEDRL K+ F S +V IP + P + + +++K ++P+ Sbjct: 235 LLAVGGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPEDLKPKM-ELVSRKPILPS 293 Query: 297 QEDVAFNRRSRSAKLRAGMR 316 QE++ N R+ SAKLR + Sbjct: 294 QEELEKNNRAHSAKLRVARK 313 >gi|296106496|ref|YP_003618196.1| S-adenosylmethyl transferase MraW [Legionella pneumophila 2300/99 Alcoy] gi|295648397|gb|ADG24244.1| S-adenosylmethyl transferase MraW [Legionella pneumophila 2300/99 Alcoy] Length = 308 Score = 180 bits (456), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 118/312 (37%), Positives = 172/312 (55%), Gaps = 18/312 (5%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSC 73 + H VLL + I L + D TFG GG+SR S+ + A+D+D AV Sbjct: 1 MAKHQSVLLHESIKGLAIKADGIYFDGTFGRGGHSREILNHLSDKGRLFAIDKDLDAV-- 58 Query: 74 GQETMRDY---KEQFSLFQATFSQLQDYVPDKGV----DGVVFDLGVSSMQIDCGDRGFS 126 + +DY ++F +F +F+Q++++ GV DG++ DLGVSS Q+D +RGFS Sbjct: 59 --QYAKDYFGLDKRFQIFHGSFAQIKEFASQAGVIGAVDGILLDLGVSSPQLDNPERGFS 116 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 F GPLDMRM + I+A++ VN+A V +L + GEE+ A RIA AIV R+ P Sbjct: 117 FMLQGPLDMRMDLTQSINAANFVNEAEVNELAHVFRAYGEERFAGRIAKAIVDARKLKPI 176 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT +L+ ++++ + ++ HPATR FQA+RI VN E+ +L+ L L G L Sbjct: 177 TTTLELAEIVKEANPKWEKHK-HPATRVFQAIRIHVNQELTDLSNCLEECLDVLGPRGRL 235 Query: 246 IVVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 V+SFHSLEDR+VK+F + G V I F+ + K V P ++ N Sbjct: 236 AVISFHSLEDRIVKQFMRDKEQGNRPPVEVPIKYEELKTNFKRVG-KAVKPQSSEIKENV 294 Query: 305 RSRSAKLRAGMR 316 RSRSA LR G + Sbjct: 295 RSRSAVLRIGEK 306 >gi|257888481|ref|ZP_05668134.1| methyltransferase [Enterococcus faecium 1,141,733] gi|257824535|gb|EEV51467.1| methyltransferase [Enterococcus faecium 1,141,733] Length = 319 Score = 180 bits (456), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 115/306 (37%), Positives = 176/306 (57%), Gaps = 16/306 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H V+L++ + LN P V +D T G G+S S ++ A D+D A+ + Sbjct: 7 HYTVMLKETVDGLNIKPDGVYVDCTLGGAGHSEYLLSQLSSKGHLYAFDQDQKAIDHAKL 66 Query: 77 TMRDYKEQ--FSLFQATFSQLQD----YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + Y EQ + +A F +L++ YV DK VDG+++DLGVSS Q+D +RGFS+ + Sbjct: 67 RLASYVEQGMVTFIKANFRELEERLSEYV-DK-VDGILYDLGVSSPQLDEAERGFSYHQD 124 Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM S ++A V+N+ +L +I GEEK + +IA I + R++ P QTT Sbjct: 125 APLDMRMDQSAPLTAYHVINEYPYHELVKIFFRYGEEKFSKQIAREIERVRKTKPIQTTG 184 Query: 190 DLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I++ + ++ HPA R FQA+RI VN+E+ L A + LK G + V+ Sbjct: 185 ELVEIIKQVIPAPARRKGGHPAKRIFQAVRIAVNDELGAEETSLEQAIRLLKVNGRISVI 244 Query: 249 SFHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 +FHSLEDR+VK F S + +IP P + + IT+K ++P++E++A N RS Sbjct: 245 TFHSLEDRIVKSMFKEYSTVQDLPPGLPVIPDEFQPEL-KVITRKPILPSEEELAENNRS 303 Query: 307 RSAKLR 312 RSAKLR Sbjct: 304 RSAKLR 309 >gi|69244718|ref|ZP_00602982.1| methyltransferase [Enterococcus faecium DO] gi|257879362|ref|ZP_05659015.1| methyltransferase [Enterococcus faecium 1,230,933] gi|257881772|ref|ZP_05661425.1| methyltransferase [Enterococcus faecium 1,231,502] gi|257890188|ref|ZP_05669841.1| methyltransferase [Enterococcus faecium 1,231,410] gi|257893516|ref|ZP_05673169.1| methyltransferase [Enterococcus faecium 1,231,408] gi|260558804|ref|ZP_05830993.1| methyltransferase [Enterococcus faecium C68] gi|293553181|ref|ZP_06673818.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium E1039] gi|293560478|ref|ZP_06676970.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium E1162] gi|293568304|ref|ZP_06679628.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium E1071] gi|294621599|ref|ZP_06700764.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium U0317] gi|314937875|ref|ZP_07845191.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium TX0133a04] gi|314941366|ref|ZP_07848259.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium TX0133C] gi|314950125|ref|ZP_07853411.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium TX0082] gi|314951334|ref|ZP_07854388.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium TX0133A] gi|314992835|ref|ZP_07858236.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium TX0133B] gi|314997995|ref|ZP_07862890.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium TX0133a01] gi|68196309|gb|EAN10738.1| methyltransferase [Enterococcus faecium DO] gi|257813590|gb|EEV42348.1| methyltransferase [Enterococcus faecium 1,230,933] gi|257817430|gb|EEV44758.1| methyltransferase [Enterococcus faecium 1,231,502] gi|257826548|gb|EEV53174.1| methyltransferase [Enterococcus faecium 1,231,410] gi|257829895|gb|EEV56502.1| methyltransferase [Enterococcus faecium 1,231,408] gi|260075263|gb|EEW63576.1| methyltransferase [Enterococcus faecium C68] gi|291589016|gb|EFF20840.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium E1071] gi|291598764|gb|EFF29816.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium U0317] gi|291602591|gb|EFF32806.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium E1039] gi|291605626|gb|EFF35068.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium E1162] gi|313588007|gb|EFR66852.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium TX0133a01] gi|313592639|gb|EFR71484.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium TX0133B] gi|313596551|gb|EFR75396.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium TX0133A] gi|313599789|gb|EFR78632.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium TX0133C] gi|313642733|gb|EFS07313.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium TX0133a04] gi|313643566|gb|EFS08146.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium TX0082] Length = 319 Score = 180 bits (456), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 111/304 (36%), Positives = 174/304 (57%), Gaps = 12/304 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H V+L++ + LN P V +D T G G+S S ++ A D+D A+ + Sbjct: 7 HYTVMLKETVDGLNIKPDGVYVDCTLGGAGHSEYLLSQLSSKGHLYAFDQDQKAIDHAKL 66 Query: 77 TMRDYKEQ--FSLFQATFSQLQDYVPDK--GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + Y EQ + +A F +L++ + + VDG+++DLGVSS Q+D +RGFS+ + P Sbjct: 67 RLASYVEQGMVTFIKANFRELEERLSEHVDKVDGILYDLGVSSPQLDEAERGFSYHQDAP 126 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S +SA V+N+ + +L +I GEEK + +IA I + R++ P QTT +L Sbjct: 127 LDMRMDQSAPLSAYHVINEYSYHELVKIFFRYGEEKFSKQIAREIERVRKTKPIQTTGEL 186 Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I++ + ++ HPA R FQA+RI VN+E+ L A + LK G + V++F Sbjct: 187 VEIIKQVIPAPARRKGGHPAKRIFQAVRIAVNDELGAEEASLEQAIRLLKVNGRISVITF 246 Query: 251 HSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 HSLEDR+VK F S + +IP P + + IT+K ++P++E++ N RSRS Sbjct: 247 HSLEDRIVKSMFKEYSTVQDLPPGLPVIPDEFQPEL-KVITRKPILPSEEELTENNRSRS 305 Query: 309 AKLR 312 AKLR Sbjct: 306 AKLR 309 >gi|254787005|ref|YP_003074434.1| S-adenosyl-methyltransferase MraW [Teredinibacter turnerae T7901] gi|262825811|sp|C5BP42|RSMH_TERTT RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|237684519|gb|ACR11783.1| SAM-dependent methyltransferase MraW [Teredinibacter turnerae T7901] Length = 311 Score = 180 bits (456), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 116/315 (36%), Positives = 184/315 (58%), Gaps = 20/315 (6%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 M+ IH+++ +L E V AL+ A G V +D TFG GG+SR+ + S ++A D Sbjct: 1 MTQEIHYSV-----LLKESVDALVTNADG-VYIDGTFGRGGHSRAVLQKLSPQGRLLAFD 54 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP------DKGVDGVVFDLGVSSMQID 119 +DP AV+ G+E + +FS+ +F + + + + GV+ DLGVSS Q+D Sbjct: 55 KDPEAVAYGRE-LAGSDNRFSMVHDSFVNMASHWASAAHANNWSLSGVLLDLGVSSPQLD 113 Query: 120 CGDRGFSFQKSGPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178 +RGFSF GPLDMRM + SG +A++ +N A +L ++ GEE+ A R+A AIV Sbjct: 114 QAERGFSFMHDGPLDMRMDNSSGQTAAEWINTAEESELAFVIKEYGEERFARRMARAIVA 173 Query: 179 RRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R+ +P T L++++ + + + HPATR+FQA+RIF+N E+++L L + + Sbjct: 174 EREKSPITQTLRLANIVSEANPKWEKGK-HPATRAFQAIRIFINRELDDLTATLAQSLEM 232 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297 L +GG L+V+SFHSLEDR+VK+F ++ GK + + + +++ K + Sbjct: 233 LPSGGRLVVISFHSLEDRIVKRFMRDQARGKQFPIGMPVTEDMLEKKLKTLGKAQRAGDR 292 Query: 298 EDVAFNRRSRSAKLR 312 E +A N RSRSA LR Sbjct: 293 E-LAENIRSRSATLR 306 >gi|187934997|ref|YP_001886637.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum B str. Eklund 17B] gi|263446060|sp|B2TS30|RSMH_CLOBB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|187723150|gb|ACD24371.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum B str. Eklund 17B] Length = 310 Score = 180 bits (456), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 110/303 (36%), Positives = 173/303 (57%), Gaps = 12/303 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+ VLL + + L+ + +D T G G+S + SN +I +D+D A+ +E Sbjct: 5 HISVLLNECLDALDIKDNGIYVDCTLGGAGHSSHILERLSNEGLLIGIDQDRDALKAAKE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ + E + F + + + + VDG++ DLGVSS Q+D G RGFS+ K PL Sbjct: 65 RLKRF-ENVKYVHSNFYDIDNILQNLDIPKVDGILMDLGVSSYQLDEGARGFSYMKDAPL 123 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ + SA ++VN+ + +L +I+ GEE+ A RI++ IV RR P +TT +L Sbjct: 124 DMRMNRDNDFSAYEIVNEYSEDELYKIIRNYGEERFAKRISNCIVNRRSDKPIETTMELV 183 Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + ++ HPA R+FQA+RI VN+E++ L Q + LK GG + +++FH Sbjct: 184 DIIKAAIPAKARREGPHPAKRTFQAIRIEVNSELKILNQTIEDGVNRLKPGGRMAIITFH 243 Query: 252 SLEDRLVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK F + R M P+V + I++K + PT+E+V N RSRSA Sbjct: 244 SLEDRIVKLKFRELNDPCTCPREFPMCICGKKPSV-RLISRKGIEPTKEEVEENPRSRSA 302 Query: 310 KLR 312 KLR Sbjct: 303 KLR 305 >gi|268319710|ref|YP_003293366.1| S-adenosyl-methyltransferase MraW [Lactobacillus johnsonii FI9785] gi|262398085|emb|CAX67099.1| S-adenosyl-methyltransferase MraW [Lactobacillus johnsonii FI9785] Length = 340 Score = 180 bits (456), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 112/309 (36%), Positives = 177/309 (57%), Gaps = 15/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77 H VLL + I LNP G + +DATFG GG++R VI D+D +A+S +E+ Sbjct: 30 HKSVLLHETIDNLNPKDGGLYVDATFGGGGHARYLLSKLNKGTVIGFDQDEYAISMAKES 89 Query: 78 MRDY-----KEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + + L F L++ + + G+DG+ +DLGVSS Q D +RGFS++ Sbjct: 90 FAKELQVGAEPRLMLVHDNFCHLKENLVELGISDGIDGIYYDLGVSSPQFDQPERGFSYR 149 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 LDMRM S + A +VN + K+L+ +L G+EK + +IA IV RR+ P T Sbjct: 150 FDARLDMRMDQSQELDAYTMVNTWSQKELSDVLYKYGDEKFSRQIARKIVDRRKEKPIVT 209 Query: 188 TQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T DL +I+ + +++ + HPA +SFQA+R+ VNNE+ L + L A K LK GG + Sbjct: 210 TFDLVDVIKDAIPAYARRSGGHPAKKSFQAIRVAVNNELVVLQESLEEAIKLLKPGGRIS 269 Query: 247 VVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V++F S ED++VKK F S ++ M+P+++ P + + I++K ++ + +++ N R Sbjct: 270 VITFQSHEDKIVKKIFKKYSEVEIPRGMPMVPADSKPTL-RLISRKPIMASSDELEENNR 328 Query: 306 SRSAKLRAG 314 S SAKLR Sbjct: 329 SHSAKLRVA 337 >gi|82703617|ref|YP_413183.1| methyltransferase [Nitrosospira multiformis ATCC 25196] gi|123543903|sp|Q2Y630|RSMH_NITMU RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|82411682|gb|ABB75791.1| methyltransferase [Nitrosospira multiformis ATCC 25196] Length = 316 Score = 180 bits (456), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 119/314 (37%), Positives = 176/314 (56%), Gaps = 21/314 (6%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCG 74 G H VLL++ + L P + +D TFG GG+SR ++G N +IA DRDP A + G Sbjct: 5 GKHTTVLLQEAVEALALKPDGIYVDGTFGRGGHSRLILERLGKNGRLIAFDRDPVACAVG 64 Query: 75 QETMRDY-KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130 R + E+F + +++S+LQ+ + + DGV+ DLGVSS Q++ RGFSF Sbjct: 65 ----RSFGDERFCMVHSSYSRLQEVLRQLNIGQIDGVLLDLGVSSPQLEEATRGFSFSME 120 Query: 131 GPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 GPLDMRM + G +A+ + A+ L ++ GEE+ A +IA AIVK R P TT Sbjct: 121 GPLDMRMDTTEGQTAAQWLASASEVQLEEVIKEYGEERFAKQIARAIVKARARQPLVTTS 180 Query: 190 DLSSLIQKTVYFSKNN-RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L++++ + + +PATR+FQA+RI++N E+E L+ L + LK GG L+V+ Sbjct: 181 QLAAIVAAAIPARAREPKQNPATRTFQAIRIYLNQELERLSLALPQCVEMLKTGGRLVVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHP------AVFQSITKKVVVPTQEDVAF 302 SFHSLEDR+VK+F + +H+ P A A Q + K V P +V Sbjct: 241 SFHSLEDRIVKRFIREGANTDKLPKHL-PLRADEVRRFSRASLQ-MVGKAVRPGVAEVEC 298 Query: 303 NRRSRSAKLRAGMR 316 N R+RSA +R R Sbjct: 299 NPRARSAVMRVAER 312 >gi|325202777|gb|ADY98231.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis M01-240149] Length = 316 Score = 180 bits (456), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 112/287 (39%), Positives = 164/287 (57%), Gaps = 10/287 (3%) Query: 39 VILDATFGAGGYSR-SFCKMG--SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95 V +D TFG GG+SR ++G +I D+DP A++ +E R K + + F+ Sbjct: 16 VYVDGTFGRGGHSRLILSRLGDAGRLIVFDKDPQAIAVAEELARSDK-RVGVVHGGFASF 74 Query: 96 QDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQA 151 Q + G VDG +FDLG+SS QID G RGFSF+ PLDMRM + G+SA++ + A Sbjct: 75 QTALDGLGIGKVDGALFDLGISSPQIDDGSRGFSFRFDAPLDMRMDTTRGMSAAEWIAVA 134 Query: 152 NVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPAT 211 + +DL ++ GEE+ + +IA AIV +R +P TT+ L+ ++ + V + + PAT Sbjct: 135 SEQDLHEVIKNYGEERFSRQIARAIVAQRAESPIDTTRKLAQIVAQNVRTRERGQ-DPAT 193 Query: 212 RSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMA 271 R+FQA+RIF+N E+EE+ L LK GG L V++FHSLEDR+VK+F S Sbjct: 194 RTFQAIRIFINRELEEVGAVLPQVMCRLKEGGRLAVIAFHSLEDRIVKQFVKKYSQHAPL 253 Query: 272 VRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 R A P I + + P + ++A N R+RSA LR RT Sbjct: 254 PRWAAVREADLPEPPLKIAGRALKPGEAEIAANPRARSAVLRVAERT 300 >gi|110639131|ref|YP_679340.1| S-adenosyl-methyltransferase MraW [Cytophaga hutchinsonii ATCC 33406] gi|122966614|sp|Q11RG6|RSMH_CYTH3 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|110281812|gb|ABG59998.1| S-adenosylmethionine methyltransferase [Cytophaga hutchinsonii ATCC 33406] Length = 298 Score = 180 bits (456), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 113/303 (37%), Positives = 169/303 (55%), Gaps = 14/303 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77 HVPVLL++ + LN P + +D TFG GG+SR K G + A D+D AV ++ Sbjct: 3 HVPVLLKESVEGLNINPEGIYVDVTFGGGGHSREILKHLKGGKLYAFDQDADAVDNAKDL 62 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + F+L A F ++ Y+ GVD G++ DLG+SS QID +RGFS + PLD Sbjct: 63 I---GPNFTLIPANFRYIKKYLRLNGVDKVDGLLGDLGISSHQIDTPERGFSIRYDAPLD 119 Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM + +A+D++N+ + L ILG+ GE + A +A A+VK R + P T +L Sbjct: 120 MRMDRAIDKTAADIINKYSEHGLHSILGMYGEVRNAKTLAQALVKERINKPINRTSELIE 179 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 ++ K ++ + + FQALRI VN E+E L L +++ LK+GG L ++S+HSL Sbjct: 180 VLSDYAPRGKESKYY--AQVFQALRIEVNEELEALKDLLEQSQQVLKSGGRLSIISYHSL 237 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 EDRLVK F A + + + P F+S+ K + P E+ N R+RSA+LR Sbjct: 238 EDRLVKNFVQQGKFHGDAEKDLYGNTNKP--FKSVG-KAIDPDDEEKERNNRARSARLRI 294 Query: 314 GMR 316 R Sbjct: 295 AER 297 >gi|330826599|ref|YP_004389902.1| ribosomal RNA small subunit methyltransferase H [Alicycliphilus denitrificans K601] gi|329311971|gb|AEB86386.1| Ribosomal RNA small subunit methyltransferase H [Alicycliphilus denitrificans K601] Length = 308 Score = 180 bits (456), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 123/306 (40%), Positives = 174/306 (56%), Gaps = 16/306 (5%) Query: 20 HVPVLL-EKVIALLN--PAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSC 73 H VL E V ALL AP +D TFG GG++R ++G+ ++A D+DP A+ Sbjct: 7 HTTVLASEAVDALLGGAAAPVGTFVDGTFGRGGHARLILQRLGAQGRLVAFDKDPEAI-- 64 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 E R + +FS+ FS L + +P V GV+ DLG+SS QID RGFSF+ GPL Sbjct: 65 -HEAARIHDARFSIQHQGFSHLGE-LPAASVAGVLLDLGISSPQIDDPARGFSFRFDGPL 122 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR-QSAPFQTTQDL 191 DMRM + G S ++ + A + ++ GEE+ A IA AIV RR Q P T +L Sbjct: 123 DMRMDTTRGQSVAEWLAGAEAAQIAEVIRDYGEERFAGPIAKAIVARRTQGGPIVGTAEL 182 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ V + + +PATR+FQA RIF+N E+EEL Q L ++ L GG L+V+SFH Sbjct: 183 ADIVAGAVKTREPGQ-NPATRTFQAFRIFINAELEELQQALEASLTVLAPGGRLVVISFH 241 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+VK+F A R K M R + P +++ + V P+ +V N R+RSA + Sbjct: 242 SLEDRIVKQFIA-RHSKEMFDRRAPFAAPTPMRLKALGR--VKPSAAEVVANPRARSAVM 298 Query: 312 RAGMRT 317 R RT Sbjct: 299 RVAERT 304 >gi|312795053|ref|YP_004027975.1| S-adenosyl-methyltransferase mraW [Burkholderia rhizoxinica HKI 454] gi|312166828|emb|CBW73831.1| S-adenosyl-methyltransferase mraW (EC 2.1.1.-) [Burkholderia rhizoxinica HKI 454] Length = 317 Score = 179 bits (455), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 125/324 (38%), Positives = 188/324 (58%), Gaps = 22/324 (6%) Query: 9 MSSAIHHTIGDHVPVLL-EKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIAL 64 M+SA+ G H VLL E V AL+ A G + +D TFG GG+SR+ + +IA Sbjct: 1 MASAMEKP-GQHRTVLLDEAVDALITRADG-IYVDGTFGRGGHSRAVLARLAPAARLIAF 58 Query: 65 DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCG 121 D+DP A+ + + ++ +F+QL+D + +G V GV+ DLGVSS QID Sbjct: 59 DKDPQAIEVARGIA---DPRLNVVHGSFAQLRDVLAARGGVRVSGVLLDLGVSSPQIDDP 115 Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 RGFSF+ GPLDMRM + G SA+ + + ++L ++ GEE+ A +IA AIV RR Sbjct: 116 ARGFSFRHDGPLDMRMDPTRGESAAQWLAHVDERELIEVIRDYGEERFAVQIAKAIVARR 175 Query: 181 QSA----PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236 + P T++L+ ++ + V + + PATR+FQA+RI +N E+ EL L +A Sbjct: 176 AESGRLGPIVRTRELAEIVARAVKTREKGQ-DPATRTFQAIRIHINQELAELPVVLETAL 234 Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH--PAVFQSITKKVVV 294 ++L+ GG L+V+SFHSLEDR+VK+FF S + + AV +P A P+ I +V Sbjct: 235 ESLEQGGRLVVISFHSLEDRIVKRFFQSHA-RAPAVDRRLPIRAADLPSPPLRILGRVFA 293 Query: 295 PTQEDVAFNRRSRSAKLRAGMRTV 318 + +VA N R+RSA +R R + Sbjct: 294 -GEAEVAANPRARSAVMRIAERVL 316 >gi|148360438|ref|YP_001251645.1| S-adenosylmethyl transferase MraW [Legionella pneumophila str. Corby] gi|263456280|sp|A5IFZ9|RSMH_LEGPC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|148282211|gb|ABQ56299.1| S-adenosylmethyl transferase MraW [Legionella pneumophila str. Corby] gi|307609707|emb|CBW99217.1| hypothetical protein LPW_09981 [Legionella pneumophila 130b] Length = 308 Score = 179 bits (455), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 118/312 (37%), Positives = 172/312 (55%), Gaps = 18/312 (5%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSC 73 + H VLL + I L + D TFG GG+SR S+ + A+D+D AV Sbjct: 1 MAKHQSVLLHESIKGLAIKADGIYFDGTFGRGGHSREILNHLSDKGRLFAIDKDLDAV-- 58 Query: 74 GQETMRDY---KEQFSLFQATFSQLQDYVPDKGV----DGVVFDLGVSSMQIDCGDRGFS 126 + +DY ++F +F +F+Q++++ GV DG++ DLGVSS Q+D +RGFS Sbjct: 59 --QYAKDYFGLDKRFQIFHGSFAQIKEFASQAGVIGAVDGILLDLGVSSPQLDNPERGFS 116 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 F GPLDMRM + I+A++ VN+A V +L + GEE+ A RIA AIV R+ P Sbjct: 117 FMLQGPLDMRMDLTQSINAANFVNEAEVNELAHVFRAYGEERFAGRIAKAIVDARKLKPI 176 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT +L+ ++++ + ++ HPATR FQA+RI VN E+ +L+ L L G L Sbjct: 177 TTTLELAEIVKEANPKWEKHK-HPATRVFQAIRIHVNQELTDLSNCLEQCLDVLGPRGRL 235 Query: 246 IVVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 V+SFHSLEDR+VK+F + G V I F+ + K V P ++ N Sbjct: 236 AVISFHSLEDRIVKQFMRDKEQGNRPPVEVPIKYEELKTNFKRVG-KAVKPQSSEIKENV 294 Query: 305 RSRSAKLRAGMR 316 RSRSA LR G + Sbjct: 295 RSRSAVLRIGEK 306 >gi|116629844|ref|YP_815016.1| SAM-dependent methyltransferase for cell envelope biogenesis [Lactobacillus gasseri ATCC 33323] gi|238853964|ref|ZP_04644321.1| S-adenosyl-methyltransferase MraW [Lactobacillus gasseri 202-4] gi|311110516|ref|ZP_07711913.1| S-adenosyl-methyltransferase MraW [Lactobacillus gasseri MV-22] gi|122273218|sp|Q042P4|RSMH_LACGA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|116095426|gb|ABJ60578.1| SAM-dependent methyltransferase for cell envelope biogenesis [Lactobacillus gasseri ATCC 33323] gi|238833409|gb|EEQ25689.1| S-adenosyl-methyltransferase MraW [Lactobacillus gasseri 202-4] gi|311065670|gb|EFQ46010.1| S-adenosyl-methyltransferase MraW [Lactobacillus gasseri MV-22] Length = 315 Score = 179 bits (455), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 114/311 (36%), Positives = 180/311 (57%), Gaps = 15/311 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMG-SNVIALDRDPFAVSCGQET 77 H VLL + I LNP + +DATFG GG++R K+ VI D+D +A+S +E+ Sbjct: 5 HKSVLLHETIDNLNPKDDGLYVDATFGGGGHARYLLSKLNRGTVIGFDQDEYAISMAKES 64 Query: 78 MRDY-----KEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + + + L F L++ + + G+DG+ +DLGVSS Q D +RGFS++ Sbjct: 65 FAEELKPGAEPKLILVHDNFCHLKENLVELGISDGIDGIYYDLGVSSPQFDQPERGFSYR 124 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 LDMRM S + A +VN + K+L+ IL G+EK + +IA IV RR+ P T Sbjct: 125 FDARLDMRMDQSQELDAYTIVNTWSQKELSDILYKYGDEKFSRQIARKIVDRRREKPIVT 184 Query: 188 TQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T DL +I+ + +++ + HPA +SFQA+R+ VNNE+ L + L A K LK GG + Sbjct: 185 TFDLVDVIKDAIPAYARRSGGHPAKKSFQAIRVAVNNELGVLQESLEEAIKLLKPGGRIS 244 Query: 247 VVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V++F S ED++VKK F S ++ MIP+++ P + + I++K ++ + +++ N R Sbjct: 245 VITFQSHEDKIVKKIFKKYSEVEIPRGMPMIPADSKPTL-RLISRKPIMASSDELEENNR 303 Query: 306 SRSAKLRAGMR 316 S SAKLR + Sbjct: 304 SHSAKLRVAEK 314 >gi|300858822|ref|YP_003783805.1| S-adenosyl-methyltransferase [Corynebacterium pseudotuberculosis FRC41] gi|300686276|gb|ADK29198.1| S-adenosyl-methyltransferase [Corynebacterium pseudotuberculosis FRC41] gi|302206527|gb|ADL10869.1| S-adenosyl-methyltransferase MraW [Corynebacterium pseudotuberculosis C231] gi|302331082|gb|ADL21276.1| S-adenosyl-methyltransferase MraW [Corynebacterium pseudotuberculosis 1002] gi|308276769|gb|ADO26668.1| S-adenosyl-methyltransferase MraW [Corynebacterium pseudotuberculosis I19] Length = 351 Score = 179 bits (455), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 120/330 (36%), Positives = 182/330 (55%), Gaps = 28/330 (8%) Query: 11 SAIHHTIGD---HVPVLLEKVIALLNPAP------GKVILDATFGAGGYSRSFCKM--GS 59 SA ++ I D HVPVL E++ L++ AP VILD T GAGG+S F + + Sbjct: 7 SAWNYDIRDNHGHVPVLRERMAELIS-APVIKMGTSAVILDGTLGAGGHSAFFLESFPEA 65 Query: 60 NVIALDRDPFAVSCGQETMRDYKEQF----SLFQATFSQLQDYVPD----------KGVD 105 VI LDRD +++ +E + Y ++F + F +LQ + G+ Sbjct: 66 CVIGLDRDLHSLNNARERLSIYGDRFLGIHTRFDHFLPKLQQHAEAGDEIALKALRHGIS 125 Query: 106 GVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILG 164 G +FDLGVSSMQ+D +RGF+++ PLDMRM S GI+A+D++N + DL RIL + G Sbjct: 126 GALFDLGVSSMQLDQAERGFAYRVDAPLDMRMDDSKGITAADILNTYSHGDLARILKVYG 185 Query: 165 EEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNN 223 EE+ A +IA A+VK R+ APF + L L+ T+ ++ HPA R+FQALRI VN Sbjct: 186 EERFAGKIASAVVKEREKAPFTHSARLVELLYATIPAATRRTGGHPAKRTFQALRIEVNK 245 Query: 224 EIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPA 283 E+E + L L GG + +S+ SLED++VK++F S + A Sbjct: 246 ELESIENVLPVVTGCLAKGGRAVFMSYQSLEDKIVKRYFVDISTSKSPPGLPMDLPGMEA 305 Query: 284 VFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 F+ +T+ ++++A N R+ S ++RA Sbjct: 306 GFKVVTRGAEKANEQEIAENPRAASVRVRA 335 >gi|224024612|ref|ZP_03642978.1| hypothetical protein BACCOPRO_01339 [Bacteroides coprophilus DSM 18228] gi|224017834|gb|EEF75846.1| hypothetical protein BACCOPRO_01339 [Bacteroides coprophilus DSM 18228] Length = 304 Score = 179 bits (455), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 112/301 (37%), Positives = 175/301 (58%), Gaps = 18/301 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDP--FAVSCGQET 77 H+PVLLE+ I +N PG + +D TFG GG+S+ + +D+D F+ ++ Sbjct: 9 HIPVLLEESIDGMNIQPGGIYVDMTFGGGGHSKEILR------RMDKDSRLFSFDQDEDA 62 Query: 78 MRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 R+ E+F+ ++ F L +++ GV D ++ DLGVSS D +RGFSF+ G Sbjct: 63 ERNIVNDERFTFVRSNFRYLHNFLRYYGVEKVDAILADLGVSSHHFDDSERGFSFRFDGN 122 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ +GI+A+D+VN + L + + GE K + ++A +VK R S T D Sbjct: 123 LDMRMNKRAGITAADIVNTYEEERLADLFYLYGELKNSRKLAATLVKARSSKKIVTIGDF 182 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++ K +Y + + A + FQALRI VN E+E L + L +A +ALK GG L V+++H Sbjct: 183 LDIV-KPLYGREREKKELA-KVFQALRIEVNQEMEALKEMLYAATEALKPGGRLSVITYH 240 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+VK + + + +V+ + P F+ + KV+VPT+E++ N RSRSAKL Sbjct: 241 SLEDRIVKNVMKTGNAEGKSVQDFYGNVQSP--FRLVNNKVIVPTEEEIIRNPRSRSAKL 298 Query: 312 R 312 R Sbjct: 299 R 299 >gi|254527132|ref|ZP_05139184.1| S-adenosyl-methyltransferase MraW [Prochlorococcus marinus str. MIT 9202] gi|221538556|gb|EEE41009.1| S-adenosyl-methyltransferase MraW [Prochlorococcus marinus str. MIT 9202] Length = 300 Score = 179 bits (455), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 114/310 (36%), Positives = 176/310 (56%), Gaps = 42/310 (13%) Query: 19 DHVPVLLEKVIALLNPAPGKVI-------LDATFGAGGYSRSFCKMGS--NVIALDRDPF 69 +H V+ +++IA L P +I +DAT G GG+S + + S N+I LD+DPF Sbjct: 12 NHKSVMTDEIIASLEHYP--LIHNNQLKGIDATLGGGGHSFNLLRKYSELNIIGLDQDPF 69 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 A + + +K + + + F+ D+VP + V V+ DLGV+S QID RGFSFQK Sbjct: 70 ARISASKKLDKFKNRIDIRASNFA---DFVPKEKVSFVIADLGVNSNQIDDPKRGFSFQK 126 Query: 130 SGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI-VKRRQSAPFQT 187 GPLDMRM+ + A ++ N KDL ++ G+E+ + +IA I + +++ + Sbjct: 127 DGPLDMRMNPLLEVDAEKLIEALNEKDLANLIYKYGDERLSRKIARKIKLDLKENGKYSG 186 Query: 188 TQDLSSLIQ-----KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 T++L+ I K Y +IHPATR+FQALRI VN EIE L + L++ + L G Sbjct: 187 TKELAYSIAGCFPPKQRY----KKIHPATRTFQALRIAVNKEIEVLEKFLQAVPEWLLPG 242 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G++ ++SFHSLEDRLVK F + +++TKK + P++++V F Sbjct: 243 GIISIISFHSLEDRLVKSSFKNDQR-----------------LKNLTKKPITPSEQEVEF 285 Query: 303 NRRSRSAKLR 312 N+R+RS KLR Sbjct: 286 NKRARSGKLR 295 >gi|312866364|ref|ZP_07726582.1| S-adenosyl-methyltransferase MraW [Streptococcus downei F0415] gi|311098058|gb|EFQ56284.1| S-adenosyl-methyltransferase MraW [Streptococcus downei F0415] Length = 316 Score = 179 bits (455), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 110/309 (35%), Positives = 179/309 (57%), Gaps = 14/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMG--SNVIALDRDPFAVSCGQE 76 HV VLL + + +L P P + +DAT G G+S K+G ++ D+D A+ Q Sbjct: 7 HVSVLLHETVDMLAPKPDGIYVDATLGGAGHSAYLLSKLGPKGHLYCFDQDQSAIDNAQV 66 Query: 77 TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++DY ++ + + F L+ + ++GV DG+++DLGVSS Q+D +RGFS+++ Sbjct: 67 KLKDYVDRGMVTFIKDNFRNLKADLAEEGVTQIDGILYDLGVSSPQLDQRERGFSYKQDA 126 Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ +SA DVVN + +DL +I GE+K + +IA I + R+S P +TT + Sbjct: 127 PLDMRMNQEADLSAYDVVNTYSYQDLVKIFFKYGEDKFSKQIARKIEQARKSKPIETTTE 186 Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ +I K+ +K + HPA + FQA+RI VN+E+ + ++ A + L G + V+ Sbjct: 187 LTEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQALELLALDGRISVI 245 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F S V IP P + + +K ++P+Q +++ N R+ Sbjct: 246 TFHSLEDRLTKQIFKEASSVDVPKGLPFIPEEMQPKI-ALVNRKPILPSQGELSVNNRAH 304 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 305 SAKLRVAKK 313 >gi|120609507|ref|YP_969185.1| S-adenosyl-methyltransferase MraW [Acidovorax citrulli AAC00-1] gi|263433318|sp|A1TKC3|RSMH_ACIAC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|120587971|gb|ABM31411.1| S-adenosyl-methyltransferase MraW [Acidovorax citrulli AAC00-1] Length = 311 Score = 179 bits (455), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 118/300 (39%), Positives = 172/300 (57%), Gaps = 16/300 (5%) Query: 26 EKVIALLN---PAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQETMR 79 E V ALL PAP V +DATFG GG+SR ++G + ++A D+DP A+ E R Sbjct: 16 EAVDALLGGAGPAPAGVWIDATFGRGGHSRRILERLGPDGRLVAFDKDPEAI---HEAAR 72 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 +FS+ F L D +P++ G++ DLGVSS QID +RGFSF+ GPLDMRM Sbjct: 73 ITDARFSIRHEGFRHLAD-LPERSAAGILMDLGVSSPQIDSPERGFSFRFDGPLDMRMDT 131 Query: 140 S-GISASDVVNQANVKDLTRILGILGEEKQAS-RIAHAIVKRRQSAPFQTTQDLSSLIQK 197 + G S +D + A+V + ++ GEE+ A +R + P +TT +L+ L+ Sbjct: 132 TRGESVADWLATADVGQIAEVIREYGEERFAGPIAKAIAARRAERGPLRTTSELAQLVAG 191 Query: 198 TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRL 257 V + + +PATR+FQALRIF+N E+EEL L ++ + L GG L V+SFHSLEDR+ Sbjct: 192 AVKTREAGQ-NPATRTFQALRIFINAELEELQAALEASLRVLAPGGRLAVISFHSLEDRI 250 Query: 258 VKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 VK+F A S +V R + P +++ + + P +V N R+RSA +R RT Sbjct: 251 VKQFIAQHSREVYDRRAPF-AAPQPMRLKALDR--IKPGACEVDANPRARSAVMRVAERT 307 >gi|269127144|ref|YP_003300514.1| S-adenosyl-methyltransferase MraW [Thermomonospora curvata DSM 43183] gi|268312102|gb|ACY98476.1| S-adenosyl-methyltransferase MraW [Thermomonospora curvata DSM 43183] Length = 337 Score = 179 bits (455), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 104/298 (34%), Positives = 170/298 (57%), Gaps = 14/298 (4%) Query: 20 HVPVLLEKVIALLNPA----PG---KVILDATFGAGGYSRSFCKMGSNV--IALDRDPFA 70 H+PVLL++V++LL PA P + +DAT G GG++ + + + I LDRDP A Sbjct: 12 HIPVLLDRVLSLLAPAVESAPAGRDPLYVDATLGMGGHAEAMLQAHPRLRLIGLDRDPSA 71 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSF 127 + + + ++ L A + +L + + G + ++FDLGVSS Q+D +RGF++ Sbjct: 72 IERAGRRLARFADRVRLVHAVYDELPRVLAELGEPHAEAILFDLGVSSPQLDEAERGFAY 131 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 PLDMRM + ++A+DVVN ++L RIL GEE+ A RIA AI + R+ AP + Sbjct: 132 SYDAPLDMRMDPTQPLTAADVVNGYPPEELARILREYGEERHARRIAAAIERERRRAPLR 191 Query: 187 TTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 +T L+ L+++ + ++ + +PA R+FQALRI VN E+ + L +A +AL GG + Sbjct: 192 STGRLAELVRQAIPAPARRSGGNPAKRTFQALRIEVNGELAIWERALPAALQALPVGGRV 251 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 V+S+HSLEDR+ K+ + S + H F+ +T+ P +E++ N Sbjct: 252 AVLSYHSLEDRITKRVLTACSTDTTPPGLPVSLPEHRPTFRLLTRGAETPGEEEITAN 309 >gi|38234181|ref|NP_939948.1| S-adenosyl-methyltransferase MraW [Corynebacterium diphtheriae NCTC 13129] gi|42559424|sp|P60395|RSMH_CORDI RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|38200443|emb|CAE50131.1| Conserved hypothetical protein [Corynebacterium diphtheriae] Length = 339 Score = 179 bits (455), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 113/319 (35%), Positives = 177/319 (55%), Gaps = 27/319 (8%) Query: 20 HVPVLLEKVIALLNP-----APGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVS 72 HVPVL ++ L+ P VI+D T GAGG+S+ F + + VI LDRD +++ Sbjct: 19 HVPVLRARMAELIAPKVTAMGSDAVIIDGTLGAGGHSKYFLESFPEARVIGLDRDTNSLA 78 Query: 73 CGQETMRDYKEQFSLFQATFSQL--------QDYVP------DKGVDGVVFDLGVSSMQI 118 +E ++++ ++F F + Q P ++G+ G +FDLGVSSMQ+ Sbjct: 79 SARERLKEFGDRFLGIHTRFDRFAPKLEELAQSGNPIAATALEQGISGALFDLGVSSMQL 138 Query: 119 DCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177 D +RGF+++ PLDMRM + GI+A+DV+N + +L RIL G+E+ A +IA AIV Sbjct: 139 DQAERGFAYRVDAPLDMRMDNTIGITAADVLNTYSHGELARILKTYGDERFAGKIASAIV 198 Query: 178 KRRQSAPFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236 + R+ PF T+ L L+ T+ ++ HPA R+FQALRI VN E+E L L Sbjct: 199 REREKEPFDTSARLVELLYATIPAATRRTGGHPAKRTFQALRIEVNRELESLENVLPEIT 258 Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVVV 294 + L GG + +S+ SLED++VK++F S S + +P A F+ +T+ Sbjct: 259 QRLTTGGRAVFMSYQSLEDKIVKRYFVDISTSKTPPGLPMELPEYA--PKFKVVTRGAEK 316 Query: 295 PTQEDVAFNRRSRSAKLRA 313 T ++ N R+ S ++RA Sbjct: 317 ATDAEIEENPRAASVRVRA 335 >gi|331265736|ref|YP_004325366.1| S-adenosyl-methyltransferase [Streptococcus oralis Uo5] gi|326682408|emb|CBZ00025.1| S-adenosyl-methyltransferase [Streptococcus oralis Uo5] Length = 316 Score = 179 bits (455), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 110/309 (35%), Positives = 177/309 (57%), Gaps = 14/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 HV VLL + I +L+ P + +DAT G G+S S ++ A D+D A+ Q+ Sbjct: 7 HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y KE + + F LQ + + GV DG+ +DLGVSS Q+D +RGFS++K Sbjct: 67 RLAPYIEKEMVTFIKDNFRHLQARLQEAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ + ++A +VVN + DL RI GE+K + ++A I + R+ P +TT + Sbjct: 127 PLDMRMNQEASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQVARKIEQARELKPIETTTE 186 Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ +I K+ +K + HPA + FQA+RI VN+E+ + ++ A + L G + V+ Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMELLAVDGRISVI 245 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F S ++ IP P + + +++K ++P++E++ N RS Sbjct: 246 TFHSLEDRLTKQLFKEASTVEIPKGLPFIPDELKPKM-ELVSRKPILPSKEELEANNRSH 304 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 305 SAKLRVARK 313 >gi|295102284|emb|CBK99829.1| S-adenosyl-methyltransferase MraW [Faecalibacterium prausnitzii L2-6] Length = 322 Score = 179 bits (455), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 113/304 (37%), Positives = 172/304 (56%), Gaps = 12/304 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-----KMGSNVIALDRDPFAVSC 73 +H+PVLL + + LN P LD T G G+SR G +++LD+DP AV Sbjct: 16 EHIPVLLNECLDGLNIDPAGTYLDGTAGGAGHSRQIALRLDGAKGGRLVSLDQDPDAVQT 75 Query: 74 GQETMRDYKEQFSLFQATF---SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + ++ Q F Q + + + ++G + DLGVSS Q+D RGFS++ Sbjct: 76 ARARLAGLPA--TVVQINFRYAGQALESLGIEKINGALLDLGVSSHQLDDAARGFSYRAD 133 Query: 131 GPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRMS G +A+D+VN A+ ++L+RIL GEE A +IA IV+ R++AP +TT Sbjct: 134 APLDMRMSQQGETAADLVNTASREELSRILRDYGEEPYAWQIAGRIVEARETAPIETTLQ 193 Query: 191 LSSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ ++ + ++ + +P+ R+FQALRI VN+E++ L +GL + L GG L V++ Sbjct: 194 LADIVAGAMPPAERRKNKNPSRRTFQALRIAVNHELDALEEGLDTIFDHLAPGGRLCVIT 253 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDRLVK F S + A + IT+K + ++++ NRRSRS Sbjct: 254 FHSLEDRLVKNKFRRWSTACTCPPEFPVCVCGGKAKAKLITRKPIEADKQELEENRRSRS 313 Query: 309 AKLR 312 A LR Sbjct: 314 AHLR 317 >gi|56964129|ref|YP_175860.1| S-adenosyl-methyltransferase MraW [Bacillus clausii KSM-K16] gi|115311580|sp|Q5WFG1|RSMH_BACSK RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|56910372|dbj|BAD64899.1| S-adenosyl-methyltransferase MraW [Bacillus clausii KSM-K16] Length = 314 Score = 179 bits (455), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 111/303 (36%), Positives = 168/303 (55%), Gaps = 11/303 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H+ VL E+ + L PG V +D T G GG+S ++ A D+D A+S E Sbjct: 4 HITVLKEESVNGLAVKPGGVYVDCTLGGGGHSERILTALAGEGHLYAFDQDEAALSFAAE 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + +KE + ++ F +++ + +GVD G++FDLGVSS Q+D RGFS+ + PL Sbjct: 64 KLSRFKENITFIRSNFRHIKEELRMRGVDKVDGILFDLGVSSPQLDEASRGFSYHQDAPL 123 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S ++A +VVN L I+ GEEK + +IA I R P +TT +L Sbjct: 124 DMRMDQSASLTAREVVNTWPFAKLHSIISRYGEEKFSKQIARKIEAYRLKQPIETTGELV 183 Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I++ + ++ HPA R+FQA+RI VN+E+ L + L GG + V++FH Sbjct: 184 DIIKEAIPAPARRAGGHPAKRTFQAIRIAVNDELGAFEDALTDGFELLNEGGRMAVITFH 243 Query: 252 SLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDRL K+ F ++ + +IP++ A F ITKK +V E++ N R+RSA Sbjct: 244 SLEDRLCKQMFKEKTKLPDLPKGLPIIPAD-QKAPFALITKKPIVANDEEIKANNRARSA 302 Query: 310 KLR 312 KLR Sbjct: 303 KLR 305 >gi|313637016|gb|EFS02589.1| S-adenosyl-methyltransferase MraW [Listeria seeligeri FSL S4-171] Length = 312 Score = 179 bits (455), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 105/303 (34%), Positives = 172/303 (56%), Gaps = 11/303 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VLL + + +L P + +DAT G G+S ++ A D+D A+ + Sbjct: 4 HETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDNAKI 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + Y ++ + ++ F +++ + + G VDG+++DLGVSS Q+D +RGFS+ + L Sbjct: 64 KLAAYSDKVTFVKSNFRYMKEALNEHGISEVDGILYDLGVSSPQLDERERGFSYHQDAAL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM ++A VVN+ + +DL RI GEEK + +IA I +RR+ P +TT +L Sbjct: 124 DMRMDREQELTAKIVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTGELV 183 Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + ++ HP R+FQA+RI VN+E+ + L A +K GG + V++FH Sbjct: 184 DIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLIKPGGRISVITFH 243 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+ K F A++ + +IP P F+ T+K +VP++E++ N R+RSA Sbjct: 244 SLEDRITKHLFQEATKGPDLPPGLPVIPDEYKPD-FKLATRKPIVPSEEELEQNNRARSA 302 Query: 310 KLR 312 KLR Sbjct: 303 KLR 305 >gi|256372032|ref|YP_003109856.1| S-adenosyl-methyltransferase MraW [Acidimicrobium ferrooxidans DSM 10331] gi|256008616|gb|ACU54183.1| S-adenosyl-methyltransferase MraW [Acidimicrobium ferrooxidans DSM 10331] Length = 319 Score = 179 bits (455), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 114/299 (38%), Positives = 174/299 (58%), Gaps = 16/299 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETM 78 H+PV++ +V+ + P G+ +LD T G GG++ + G+ VI LDRDP A+ + Sbjct: 6 HLPVMVAEVVRAVEPQ-GRRVLDVTVGLGGHAAALLDAGAALVIGLDRDPEALHLAARRL 64 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138 + ++F + TF L V + +D V+ DLGVSS+Q+D RGFSF+ +GPLDMRM Sbjct: 65 EAFGDRFEPVRGTFRDLARVVGARRIDAVIADLGVSSLQLDHAQRGFSFRLAGPLDMRMD 124 Query: 139 CSG-ISASDVVNQANVKDLTRIL--GILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 SA+ ++ + LT +L G +G A R A AI+ + P T Q ++ Sbjct: 125 PEAPTSAASLLASLDEDGLTELLRRGEVG--PLARRYARAILA---AMPTTTEQLAEVVV 179 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + T + R HPAT FQALR+ VN+E+ +L L +A +AL+ GG+L V+++HSLED Sbjct: 180 EATPPSRRTTRRHPATLVFQALRLAVNDELGQLTALLPAAFEALEVGGVLAVLTYHSLED 239 Query: 256 RLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 RLVK+FF A R G P+ + +V + ++ VVP+ ++VA N R+RSA+LR Sbjct: 240 RLVKRFFEVAERGGAP----RTTPAGSWTSVLERRPRRGVVPSDDEVARNPRARSARLR 294 >gi|329118760|ref|ZP_08247458.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Neisseria bacilliformis ATCC BAA-1200] gi|327465107|gb|EGF11394.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Neisseria bacilliformis ATCC BAA-1200] Length = 316 Score = 179 bits (455), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 120/309 (38%), Positives = 173/309 (55%), Gaps = 16/309 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDP-FAVSCGQ 75 HV VLL + + L V +D TFG GG+SR +G+N ++ D+DP + + Sbjct: 8 HVSVLLHEAVDALAVVSDGVYVDGTFGRGGHSRLILSHLGANGRLVVFDKDPQAVAAARE 67 Query: 76 ETMRDYK-----EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +D + + FS FQ D + +DG +FDLG+SS QID G RGFSF+ Sbjct: 68 LAAQDGRVSVVHDGFSCFQTAL----DALNVGQIDGALFDLGISSPQIDDGSRGFSFRFD 123 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM + G+SA++ + A+ ++ ++ GEE+ A +IA AIV +R + P TT Sbjct: 124 APLDMRMDTTRGMSAAEWLAAADEDEICEVIRNYGEERFARQIARAIVAQRGTNPIDTTG 183 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ + + V + + PATR+FQA+RIF+N E+EE+A L A LK+GG L V+S Sbjct: 184 KLAQVAAQNVRTRERGQ-DPATRTFQAVRIFINRELEEIAAALPQAAGRLKSGGRLAVIS 242 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK+FF S R M+ P ++ K V + +VA N R+RS Sbjct: 243 FHSLEDRIVKQFFRRHSEHEPLPRWAMVREADLPQPPLALVGKAVKASAAEVAANPRARS 302 Query: 309 AKLRAGMRT 317 A LR RT Sbjct: 303 AVLRVARRT 311 >gi|282851645|ref|ZP_06261010.1| S-adenosyl-methyltransferase MraW [Lactobacillus gasseri 224-1] gi|282557613|gb|EFB63210.1| S-adenosyl-methyltransferase MraW [Lactobacillus gasseri 224-1] Length = 315 Score = 179 bits (455), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 114/311 (36%), Positives = 180/311 (57%), Gaps = 15/311 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMG-SNVIALDRDPFAVSCGQET 77 H VLL + I LNP + +DATFG GG++R K+ VI D+D +A+S +E+ Sbjct: 5 HKSVLLHETIDNLNPKDDGLYVDATFGGGGHARYLLSKLNRGTVIGFDQDEYAISMAKES 64 Query: 78 MRDY-----KEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + + + L F L++ + + G+DG+ +DLGVSS Q D +RGFS++ Sbjct: 65 FAEELKPGAEPRLILVHDNFCHLKENLVELGISDGIDGIYYDLGVSSPQFDQPERGFSYR 124 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 LDMRM S + A +VN + K+L+ IL G+EK + +IA IV RR+ P T Sbjct: 125 FDARLDMRMDQSQELDAYTIVNTWSQKELSDILYKYGDEKFSRQIARKIVDRRREKPIVT 184 Query: 188 TQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T DL +I+ + +++ + HPA +SFQA+R+ VNNE+ L + L A K LK GG + Sbjct: 185 TFDLVDVIKDAIPAYARRSGGHPAKKSFQAIRVAVNNELGVLQESLEEAIKLLKPGGRIS 244 Query: 247 VVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V++F S ED++VKK F S ++ MIP+++ P + + I++K ++ + +++ N R Sbjct: 245 VITFQSHEDKIVKKIFKKYSEVEIPRGMPMIPADSKPTL-RLISRKPIMASSDELEENNR 303 Query: 306 SRSAKLRAGMR 316 S SAKLR + Sbjct: 304 SHSAKLRVAEK 314 >gi|255020004|ref|ZP_05292077.1| S-adenosyl-methyltransferase MraW [Acidithiobacillus caldus ATCC 51756] gi|254970533|gb|EET28022.1| S-adenosyl-methyltransferase MraW [Acidithiobacillus caldus ATCC 51756] Length = 324 Score = 179 bits (455), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 117/311 (37%), Positives = 174/311 (55%), Gaps = 27/311 (8%) Query: 20 HVPVLLEKVIALLNP---APG-KVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72 H PVLL +V+A P PG ++ +DAT G GG+S + + ++ LDRDP A++ Sbjct: 11 HQPVLLAEVLAACTPLLGQPGPRLWVDATGGRGGHSAALAHLLGAQDRLLVLDRDPGAIA 70 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVF---DLGVSSMQIDCGDRGFSFQK 129 + + E+ S+ QA FS++ + + G F DLGVSS Q+D +RGFSF + Sbjct: 71 FLRTRFAE-DERVSVRQAEFSRVAQVLAEMGTGQAQFILADLGVSSPQLDRPERGFSFLR 129 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM+ G+SA+ + A ++ ++L GEE++A RIA AIV+ R P T Sbjct: 130 DGPLDMRMNPEQGMSAAQWLATAEAAEIAQVLRDYGEEREARRIARAIVRERAVRPLTRT 189 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ L+ + ++ IHPATR+FQA+R+ +N+E+ E+ L +A +L G L V+ Sbjct: 190 TQLAELVAGLLPRARAQAIHPATRTFQAIRMHINDELAEIRAFLPAAMDSLGPDGRLAVI 249 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP-------TQEDVA 301 SFHSLEDRLVK+FF + + + P P I + P + E+VA Sbjct: 250 SFHSLEDRLVKRFFRADTRQ--------PDPDLPLRNWEIPEAPWFPLGRASRASTEEVA 301 Query: 302 FNRRSRSAKLR 312 N R+RSA LR Sbjct: 302 HNPRARSATLR 312 >gi|146328861|ref|YP_001209878.1| S-adenosyl-methyltransferase MraW [Dichelobacter nodosus VCS1703A] gi|167011832|sp|A5EY11|RSMH_DICNV RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|146232331|gb|ABQ13309.1| S-adenosyl-methyltransferase MraW [Dichelobacter nodosus VCS1703A] Length = 308 Score = 179 bits (455), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 119/313 (38%), Positives = 177/313 (56%), Gaps = 25/313 (7%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQ 75 +H+PVLL + +A L AP LDATFG GG+S ++G + + ALDRD A + Sbjct: 5 EHIPVLLAEAVAALEIAPNGRYLDATFGRGGHSSEILAQLGESGQLYALDRDQQAAAVAA 64 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F + FS+++ G +DG++FDLGVSS Q+D RGFSF K GP Sbjct: 65 QIT---DPRFHFARCAFSEMETAFAALGAESLDGILFDLGVSSPQLDDPSRGFSFAKEGP 121 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQ--ASRIAHAIVKRRQSAPFQTTQ 189 LDMRM ++A + + LT ++ G E A RIA AI+ + ++T Sbjct: 122 LDMRMDNEQNLTAQKWLKNVDEDTLTTVIRDYGGEPHTVAKRIAKAILAAKND--LKSTL 179 Query: 190 DLSSLIQ----KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 DL+S++ K +Y +HPAT++FQA+RI VN+EI E+ + LR+A LK+GG+L Sbjct: 180 DLASVVAQARPKKLY---KPHLHPATQTFQAIRIAVNDEIGEIQRALRAATMMLKSGGIL 236 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ--SITKKVVVPTQEDVAFN 303 +V+SFH LED VK+F S G+ + IP+ + Q + V+ P+ ++A N Sbjct: 237 VVISFHGLEDATVKRFVRSMEGEPLPAE--IPATNTTNIHQVLRLVPPVIKPSSAEIAQN 294 Query: 304 RRSRSAKLRAGMR 316 RSRSAKLR ++ Sbjct: 295 PRSRSAKLRKAVK 307 >gi|325203518|gb|ADY98971.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis M01-240355] Length = 316 Score = 179 bits (454), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 112/287 (39%), Positives = 164/287 (57%), Gaps = 10/287 (3%) Query: 39 VILDATFGAGGYSR-SFCKMG--SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95 V +D TFG GG+SR ++G +I D+DP A++ +E R K + + F+ Sbjct: 16 VYVDGTFGRGGHSRLILSRLGDAGRLIVFDKDPQAIAVAEELARSDK-RVGVVHGGFASF 74 Query: 96 QDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQA 151 Q + G VDG +FDLG+SS QID G RGFSF+ PLDMRM + G+SA++ + A Sbjct: 75 QTALDGLGIGKVDGALFDLGISSPQIDDGSRGFSFRFDAPLDMRMDTTRGMSAAEWIAVA 134 Query: 152 NVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPAT 211 + +DL ++ GEE+ + +IA AIV +R +P TT+ L+ ++ + V + + PAT Sbjct: 135 SEQDLHEVIKNYGEERFSRQIARAIVAQRAESPIDTTRKLAQIVAQNVRTRERGQ-DPAT 193 Query: 212 RSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMA 271 R+FQA+RIF+N E+EE+ L LK GG L V++FHSLEDR+VK+F S Sbjct: 194 RTFQAVRIFINRELEEVGAVLPQVMCRLKEGGRLAVIAFHSLEDRIVKQFVKKYSQHAPL 253 Query: 272 VRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 R A P I + + P + ++A N R+RSA LR RT Sbjct: 254 PRWAAVREADLPEPPLKIAGRALKPGEAEIAANPRARSAVLRVAERT 300 >gi|326315562|ref|YP_004233234.1| S-adenosyl-methyltransferase MraW [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372398|gb|ADX44667.1| S-adenosyl-methyltransferase MraW [Acidovorax avenae subsp. avenae ATCC 19860] Length = 311 Score = 179 bits (454), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 117/300 (39%), Positives = 171/300 (57%), Gaps = 16/300 (5%) Query: 26 EKVIALLN---PAPGKVILDATFGAGGYSRSFC-KMG--SNVIALDRDPFAVSCGQETMR 79 E V ALL P+P V +DATFG GG+SR ++G ++A D+DP A+ QE R Sbjct: 16 EAVDALLGGAGPSPAGVWIDATFGRGGHSRRILERLGPQGRLVAFDKDPEAI---QEAAR 72 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 +FS+ F L + +P++ G++ DLGVSS QID RGFSF+ GPLDMRM Sbjct: 73 ITDARFSIRHEGFRHLAE-LPERSAAGILMDLGVSSPQIDSPGRGFSFRFDGPLDMRMDT 131 Query: 140 S-GISASDVVNQANVKDLTRILGILGEEKQAS-RIAHAIVKRRQSAPFQTTQDLSSLIQK 197 + G S +D + A+V + ++ GEE+ A +R + P +TT +L+ L+ Sbjct: 132 TRGESVADWLATADVGQIAEVIREYGEERFAGPIAKAIAARRAERGPLRTTSELAQLVAG 191 Query: 198 TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRL 257 V + + +PATR+FQALRIF+N E+EEL L ++ + L GG L V+SFHSLEDR+ Sbjct: 192 AVKTREAGQ-NPATRTFQALRIFINAELEELQAALEASLRVLAPGGRLAVISFHSLEDRI 250 Query: 258 VKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 VK+F A S +V R + P +++ + + P +V N R+RSA +R RT Sbjct: 251 VKQFIAQHSKEVYDRRAPF-AAPQPMRLKALDR--IKPGASEVEANPRARSAVMRVAERT 307 >gi|157412528|ref|YP_001483394.1| S-adenosyl-methyltransferase MraW [Prochlorococcus marinus str. MIT 9215] gi|262824943|sp|A8G2H7|RSMH_PROM2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|157387103|gb|ABV49808.1| Predicted S-adenosylmethionine-dependent methyltransferase [Prochlorococcus marinus str. MIT 9215] Length = 300 Score = 179 bits (454), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 113/310 (36%), Positives = 177/310 (57%), Gaps = 42/310 (13%) Query: 19 DHVPVLLEKVIALLNPAPGKVI-------LDATFGAGGYSRSFCKMGS--NVIALDRDPF 69 +H V+ ++++A L P +I +DAT G GG+S + + S N+I LD+DPF Sbjct: 12 NHKSVMTDEIMASLEHYP--LIHNNQLKGIDATLGGGGHSFNLLRKYSELNIIGLDQDPF 69 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 A + + ++K + + + F+ D+VP + V V+ DLGV+S QID RGFSFQK Sbjct: 70 ARISASKKLDEFKNRIDIRASNFA---DFVPKEKVSFVIADLGVNSNQIDDPKRGFSFQK 126 Query: 130 SGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI-VKRRQSAPFQT 187 GPLDMRM+ + A ++ N KDL ++ G+E+ + +IA I + +++ + Sbjct: 127 DGPLDMRMNPLLEVDAEKLIEALNEKDLANLIYKYGDERLSRKIARKIKLDLKENGKYSG 186 Query: 188 TQDLSSLIQ-----KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 T++L+ I K Y +IHPATR+FQALRI VN EIE L + L++ + L G Sbjct: 187 TKELAYSIAGCFPPKQRY----KKIHPATRTFQALRIAVNKEIEVLEKFLQAVPEWLLPG 242 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G++ ++SFHSLEDRLVK F + +++TKK + P++++V F Sbjct: 243 GIISIISFHSLEDRLVKSSFKNDQR-----------------LKNLTKKPITPSEQEVEF 285 Query: 303 NRRSRSAKLR 312 N+R+RS KLR Sbjct: 286 NKRARSGKLR 295 >gi|325519765|gb|EGC99070.1| 16S rRNA m(4)C1402 methyltranserfase [Burkholderia sp. TJI49] Length = 313 Score = 179 bits (454), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 118/312 (37%), Positives = 180/312 (57%), Gaps = 21/312 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VLL++ + L P V +D TFG GG+SR+ G +IA D+DP A+ Q Sbjct: 7 HRTVLLDEAVESLVTRPDGVYVDGTFGRGGHSRAVLARLGPGGRLIAFDKDPRAIETAQG 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +FS+ +F+ ++D + +GV+ GV+ DLGVSS Q+D RGFSF+ GPL Sbjct: 67 I---GDARFSIVHDSFASMRDALAARGVEKVSGVLLDLGVSSPQVDDPARGFSFRADGPL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTT 188 DMRM + G SA++ + +A++++LT ++ GEE+ A +IA A+V RR + P +T Sbjct: 124 DMRMDPTRGESAAEWLARASLQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDST 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ ++ V + + PATR+FQA+RI VN E+ +L L +A L+ GG L+V+ Sbjct: 184 GELAQIVGHAVKTREKGK-DPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVI 242 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNRR 305 SFHSLEDR+VK+F + + AV +P A S K++ P + +VA N R Sbjct: 243 SFHSLEDRIVKRFMQAHA-SAPAVDRRLPIRA--VDLPSPPLKIIGRQFPGEAEVAANPR 299 Query: 306 SRSAKLRAGMRT 317 +RSA +R R Sbjct: 300 ARSAVMRIAERV 311 >gi|229918544|ref|YP_002887190.1| S-adenosyl-methyltransferase MraW [Exiguobacterium sp. AT1b] gi|263447045|sp|C4L5T9|RSMH_EXISA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|229469973|gb|ACQ71745.1| S-adenosyl-methyltransferase MraW [Exiguobacterium sp. AT1b] Length = 310 Score = 179 bits (454), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 113/307 (36%), Positives = 172/307 (56%), Gaps = 10/307 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQE 76 +H VL + I LN P V +D T G G+S K + A D+D A++ +E Sbjct: 3 EHETVLKMESIEGLNIKPDGVYVDCTLGGAGHSEEIAKRLTTGQLYAFDQDDVALAHAKE 62 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + Y+ + + ++ F L++ + +GV DGV+FDLGVSS Q+D +RGFS+ PL Sbjct: 63 RLAPYEGRVTFIKSNFVHLKEELAQRGVTKVDGVLFDLGVSSPQLDEAERGFSYNYDAPL 122 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S SA VVN+ + +L RI GEEK + +IA I + R P +TT +L Sbjct: 123 DMRMDRSRDFSAYHVVNEWSFGELARIFFTYGEEKFSKQIARKIEQARADKPIETTFELV 182 Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 LI++ + ++ HPA R+FQA+RI VN+E+ + ++ A L G + V++FH Sbjct: 183 DLIKEAIPAPARRKGGHPAKRTFQAIRIAVNDELNVFDRAVQDAIDLLAVNGRICVITFH 242 Query: 252 SLEDRLVKKFFASRSGK--VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+ K+ F RS + +IP P + + IT+K +V ++ ++ NRRSRSA Sbjct: 243 SLEDRICKQVFKERSQHPPLPPGLPVIPKEFEPEL-KLITRKPIVASEGELEDNRRSRSA 301 Query: 310 KLRAGMR 316 KLR + Sbjct: 302 KLRVAEK 308 >gi|33301401|sp|Q8ER53|RSMH_OCEIH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 325 Score = 179 bits (454), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 112/303 (36%), Positives = 167/303 (55%), Gaps = 9/303 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQ 75 +H VL E+ I L P + +D T G GG+S ++ N + A D+D A++ + Sbjct: 3 EHYSVLKEESIKGLAIKPDGIYVDCTTGGGGHSLEIASRLNENGQLFAFDQDKDALAAAR 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + Y ++ Q+ F L++ + G VDG++FDLGVSS Q+D GDRGFS+ Sbjct: 63 DRLSTYADRIVFVQSNFRGLEEQLKKHGIEQVDGILFDLGVSSPQLDRGDRGFSYNHDAL 122 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S +SA +VVN+ + + L I GEEK + +IA I R+ +TT L Sbjct: 123 LDMRMDQSQHLSAYEVVNEWSYERLVSIFFSYGEEKFSKQIARKIEAYREQQDIKTTHQL 182 Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+ + ++ HPA R FQALRI VN+E+E L A + + G + V++F Sbjct: 183 VEIIKDAIPAPARRKGGHPAKRIFQALRIAVNDELEVFNNALHQAARLIAVNGRIAVITF 242 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+ K+ F S RH+ I +H A F+ +T+K + ++ NRRSRSA Sbjct: 243 HSLEDRICKQAFKKWSTDKPTPRHLPIVPESHQAPFKLVTRKPITADTSELDENRRSRSA 302 Query: 310 KLR 312 KLR Sbjct: 303 KLR 305 >gi|289168599|ref|YP_003446868.1| S-adenosyl-methyltransferase mraW [Streptococcus mitis B6] gi|288908166|emb|CBJ23008.1| S-adenosyl-methyltransferase mraW [Streptococcus mitis B6] Length = 316 Score = 179 bits (454), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 112/309 (36%), Positives = 177/309 (57%), Gaps = 14/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 HV VLL + I +L+ P + +DAT G G+S S ++ A D+D A+ Q+ Sbjct: 7 HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66 Query: 77 TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y E+ + + F LQ + + GV DG+ +DLGVSS Q+D +RGFS++K Sbjct: 67 RLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ + ++A +VVN + DL RI GE+K + +IA I + R+ P +TT + Sbjct: 127 PLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186 Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ +I K+ +K N+ HPA + FQA+RI VN+E+ + ++ A L G + V+ Sbjct: 187 LAEII-KSAKPAKELKNKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVI 245 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F S +V IP + P + + +++K ++P+ E++ N RS Sbjct: 246 TFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKM-ELVSRKPILPSAEELEANNRSH 304 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 305 SAKLRVARK 313 >gi|86740113|ref|YP_480513.1| S-adenosyl-methyltransferase MraW [Frankia sp. CcI3] gi|123737617|sp|Q2JD58|RSMH_FRASC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|86566975|gb|ABD10784.1| methyltransferase [Frankia sp. CcI3] Length = 321 Score = 179 bits (454), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 116/307 (37%), Positives = 177/307 (57%), Gaps = 13/307 (4%) Query: 23 VLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 +L ++V+ LL PA G +++DAT G GG++ + +V + LDRDP A+ E Sbjct: 1 MLTDRVLTLLAPALRASGAIVVDATVGLGGHAAAVLTAFPHVRLVGLDRDPDALERSGER 60 Query: 78 MRDYKE-QFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + L A + ++ + + G V G++FDLGVSS+Q+D DRGF++ + PL Sbjct: 61 LHGLAPGRVELVHAVYDEVAEILDRLGHPVVQGILFDLGVSSLQLDTDDRGFAYSRDAPL 120 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM G +A+DV+N + LTRIL GEE+ A RIA AIV+ R PF T+ L+ Sbjct: 121 DMRMDQTRGRTAADVLNTYDADALTRILREYGEERFARRIAGAIVQARAVTPFATSARLA 180 Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 L++ + ++ +PA R+FQALRI VN E++ LA+ L +A AL G L+V+S+H Sbjct: 181 DLVRDAIPAPARRTGGNPAKRTFQALRIEVNAELDVLARALPAAFDALAVSGRLVVLSYH 240 Query: 252 SLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDRLVK+ + V ++P A P + +T+ ++ + A N R+ S + Sbjct: 241 SLEDRLVKRQLRGYAEASVPPDLPVVPEGAGPR-LRWLTRGAEPASETEKAENPRAASVR 299 Query: 311 LRAGMRT 317 LRA RT Sbjct: 300 LRAVERT 306 >gi|23098917|ref|NP_692383.1| hypothetical protein OB1462 [Oceanobacillus iheyensis HTE831] gi|22777145|dbj|BAC13418.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 329 Score = 179 bits (454), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 112/303 (36%), Positives = 167/303 (55%), Gaps = 9/303 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQ 75 +H VL E+ I L P + +D T G GG+S ++ N + A D+D A++ + Sbjct: 7 EHYSVLKEESIKGLAIKPDGIYVDCTTGGGGHSLEIASRLNENGQLFAFDQDKDALAAAR 66 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + Y ++ Q+ F L++ + G VDG++FDLGVSS Q+D GDRGFS+ Sbjct: 67 DRLSTYADRIVFVQSNFRGLEEQLKKHGIEQVDGILFDLGVSSPQLDRGDRGFSYNHDAL 126 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S +SA +VVN+ + + L I GEEK + +IA I R+ +TT L Sbjct: 127 LDMRMDQSQHLSAYEVVNEWSYERLVSIFFSYGEEKFSKQIARKIEAYREQQDIKTTHQL 186 Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+ + ++ HPA R FQALRI VN+E+E L A + + G + V++F Sbjct: 187 VEIIKDAIPAPARRKGGHPAKRIFQALRIAVNDELEVFNNALHQAARLIAVNGRIAVITF 246 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+ K+ F S RH+ I +H A F+ +T+K + ++ NRRSRSA Sbjct: 247 HSLEDRICKQAFKKWSTDKPTPRHLPIVPESHQAPFKLVTRKPITADTSELDENRRSRSA 306 Query: 310 KLR 312 KLR Sbjct: 307 KLR 309 >gi|161526013|ref|YP_001581025.1| S-adenosyl-methyltransferase MraW [Burkholderia multivorans ATCC 17616] gi|189349270|ref|YP_001944898.1| S-adenosyl-methyltransferase MraW [Burkholderia multivorans ATCC 17616] gi|263446911|sp|A9AJ24|RSMH_BURM1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|160343442|gb|ABX16528.1| S-adenosyl-methyltransferase MraW [Burkholderia multivorans ATCC 17616] gi|189333292|dbj|BAG42362.1| S-adenosyl-methyltransferase [Burkholderia multivorans ATCC 17616] Length = 313 Score = 179 bits (454), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 116/311 (37%), Positives = 183/311 (58%), Gaps = 21/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMG--SNVIALDRDPFAVSCGQE 76 H VLL++ + L P + +D TFG GG+SR+ ++G +IA D+DP A+ Q Sbjct: 7 HRTVLLDEAVESLVTRPDGIYVDGTFGRGGHSRAVLARLGPAGRLIAFDKDPRAIETAQG 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +FS+ +F+ ++D + +G++ GV+ DLGVSS Q+D RGFSF+ GPL Sbjct: 67 I---GDARFSIVHDSFASMRDALAARGIEKVSGVLLDLGVSSPQVDDPARGFSFRADGPL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTT 188 DMRM + G SA++ + +A++++LT ++ GEE+ A +IA A+V RR + P +T Sbjct: 124 DMRMDPTRGESAAEWLARASLQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDST 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ ++ V + + PATR+FQA+RI VN E+ +L L +A L+ GG L+V+ Sbjct: 184 GELAQIVGHVVKTREKGK-DPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVI 242 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNRR 305 SFHSLEDR+VK+F + + AV +P A S K++ P++ +VA N R Sbjct: 243 SFHSLEDRIVKRFMQAHA-SAPAVDRRLPIRA--VDLPSPPLKIIGRQFPSEAEVAANPR 299 Query: 306 SRSAKLRAGMR 316 +RSA +R R Sbjct: 300 ARSAVMRIAER 310 >gi|255082159|ref|XP_002508298.1| predicted protein [Micromonas sp. RCC299] gi|226523574|gb|ACO69556.1| predicted protein [Micromonas sp. RCC299] Length = 363 Score = 179 bits (454), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 108/301 (35%), Positives = 165/301 (54%), Gaps = 17/301 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 HVPVL+ +V+ + + +D T GAGG++ + + + + Q R Sbjct: 67 HVPVLMRQVLDAFDGRSLRCYVDGTMGAGGHASAIIRAHPELRTFVGFDLRIHTVQSNFR 126 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 +E+ + Q + D GVD ++ DLGVSSM +D +RGFSF GPLDMRM Sbjct: 127 HMRERLAELQ---------LADGGVDAILMDLGVSSMHLDTPERGFSFMNDGPLDMRMGP 177 Query: 140 SG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198 S +SA+DVVN+ +++ R++ GEEK +A I R AP +TT+ L + + Sbjct: 178 SAKMSAADVVNEWPEEEIARVIRDYGEEKHWRLLARRICDARGIAPIETTRQLVHALGRI 237 Query: 199 --VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 V ++ IHPATR+FQ +RI VN E+ + + + +A AL GG L +++FHSLED+ Sbjct: 238 PGVKKGRSGGIHPATRTFQGIRIAVNEELAVVEEAIPAAVDALAPGGRLAIITFHSLEDK 297 Query: 257 LVKKFFASRSGKVMAVRHMIPS-----NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LVK+ F + +G A + + A P + + +T+K VV ++V N RSRSAKL Sbjct: 298 LVKRAFRTFAGIAPASDRPLSAWEPQPEAPPKIVKLVTRKPVVADDDEVGANARSRSAKL 357 Query: 312 R 312 R Sbjct: 358 R 358 >gi|188587754|ref|YP_001921594.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum E3 str. Alaska E43] gi|251777689|ref|ZP_04820609.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|263446056|sp|B2V4W0|RSMH_CLOBA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|188498035|gb|ACD51171.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum E3 str. Alaska E43] gi|243082004|gb|EES47894.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 310 Score = 179 bits (454), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 109/303 (35%), Positives = 173/303 (57%), Gaps = 12/303 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+ VLL + + L+ + +D T G G+S + SN +I +D+D A+ +E Sbjct: 5 HISVLLNECLDALDIKDNGIYVDCTLGGAGHSSHILERLSNEGLLIGIDQDRDALKAAKE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ + E + F + + + + VDG++ DLGVSS Q+D G RGFS+ K PL Sbjct: 65 RLKRF-ENVKYVHSNFYDIDNILQNLDIPKVDGILMDLGVSSYQLDEGARGFSYMKDAPL 123 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ + SA ++VN+ + +L +I+ GEE+ A RI++ IV RR P +TT +L Sbjct: 124 DMRMNRDNDFSAYEIVNEYSEDELYKIIRNYGEERFAKRISNCIVNRRSDKPIETTMELV 183 Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + ++ HPA R+FQA+RI VN+E++ L Q + LK GG + +++FH Sbjct: 184 DIIKAAIPAKARREGPHPAKRTFQAIRIEVNSELKILNQTIEDGVNRLKPGGRMAIITFH 243 Query: 252 SLEDRLVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK F + R M P+V + +++K + PT+E+V N RSRSA Sbjct: 244 SLEDRIVKLKFRELNDPCTCPREFPMCICGKKPSV-RLVSRKGIEPTKEEVEENPRSRSA 302 Query: 310 KLR 312 KLR Sbjct: 303 KLR 305 >gi|323341698|ref|ZP_08081931.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464123|gb|EFY09316.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Erysipelothrix rhusiopathiae ATCC 19414] Length = 303 Score = 179 bits (454), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 110/300 (36%), Positives = 172/300 (57%), Gaps = 10/300 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H+ V+L + I LLN P + +DAT GAGG+S CK + +I D+D A+ + Sbjct: 3 HISVMLNETIELLNINPEGIYVDATLGAGGHSYEICKQLTTGRLIGFDKDLDAIERTSKR 62 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + + ++ ++ +++QL + + + G VDGV+FDLGVSS Q D +RGFS++ LD Sbjct: 63 LEVFGDKVTMVHGSYTQLTEKLNELGIDEVDGVLFDLGVSSPQFDDAERGFSYRFDSRLD 122 Query: 135 MRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM +SA +VVN+ + L +IL +E+ A RI I++ R P +TT +L Sbjct: 123 MRMDQTQALSAYEVVNEYEEEHLVQILKDNSDERYARRIVKNIIENR---PVETTFELVE 179 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 LI+++ + HPA ++FQALRI VNNE EE+ + A +K GG ++V++FHS+ Sbjct: 180 LIKRSYPGKDLKKGHPAKKTFQALRIEVNNEFEEVKDAVEQAVHVIKPGGRVVVITFHSI 239 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 EDR+VK+ F S GK V +P + + K + + E++ FN R+ SA LR Sbjct: 240 EDRIVKRIF-SNYGKPKKVDPRLPIIEEQVLNYKLVSKALKASTEELEFNNRAHSAILRG 298 >gi|148273048|ref|YP_001222609.1| S-adenosyl-methyltransferase MraW [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|263446039|sp|A5CS59|RSMH_CLAM3 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|147830978|emb|CAN01923.1| putative S-adenosyl-methyltransferase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 318 Score = 179 bits (454), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 110/298 (36%), Positives = 164/298 (55%), Gaps = 9/298 (3%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74 H PVLLE+ + LL PA G V++DAT G G+S +F G ++ LDRDP A++ Sbjct: 7 HTPVLLERCLELLAPALQGEGAVLVDATLGMAGHSEAFLDALPGLRLVGLDRDPDALAIA 66 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E + + ++ +L + + + G V GV FDLGVSS+Q+D +RGFS+ + Sbjct: 67 GERLARFGDRVNLVHTVYDGIGRALDGLGIGEVQGVFFDLGVSSLQLDRVERGFSYSQDA 126 Query: 132 PLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM +G++A+ VV + + +L RI GEEK A R A IV+ R+ P T+ Sbjct: 127 PLDMRMDGTAGLTAAQVVAEYDELELRRIFYDYGEEKLAPRYASRIVQAREVEPITTSAR 186 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L +IQ+ + HPA R FQALRI VN E+ LA+ + +A L GG ++V S+ Sbjct: 187 LVEIIQQATPAAVQRAGHPAKRVFQALRIEVNQELSVLARAMPAAVDRLAVGGRVVVESY 246 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SLEDR+VK+ +RS V + H + + + + Q ++A N R+ S Sbjct: 247 QSLEDRIVKRELRARSTSTAPVGLPVELPEHRPELKLLVRGAELADQHEIAQNPRAAS 304 >gi|304317210|ref|YP_003852355.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778712|gb|ADL69271.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 310 Score = 179 bits (454), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 109/302 (36%), Positives = 161/302 (53%), Gaps = 8/302 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77 H VLL + I L P V +D T G GG+S + +IA+DRD A+ Sbjct: 5 HESVLLNETIEYLKVKPDGVYVDGTLGGGGHSYEILRRLPRGRLIAIDRDMDALYAASVR 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++D+ + + +++ + + + +DG + DLGVSS Q+D RGFS+ PLD Sbjct: 65 LKDF-NNVTYVHDNYKNIKNILKNIDIERIDGAILDLGVSSYQLDEVKRGFSYMHDAPLD 123 Query: 135 MRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM S ++A VVN + D+ RIL GEEK A RIA IV+ R+ +TT L Sbjct: 124 MRMDKGSALTAEHVVNNYSEDDIARILFDYGEEKWAKRIAKFIVEERKKRSIKTTFQLVD 183 Query: 194 LIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+K V SK HPA R+FQA+RI VN+E++ L + + G + +++FHS Sbjct: 184 IIKKAVPASKRRTGPHPAKRTFQAIRIEVNDELKGLDSAIDDFIDVMNPNGRIAIITFHS 243 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK + +++ + V + ITKK V P +E++ N RSRSAKLR Sbjct: 244 LEDRIVKNMYKKLENPCTCPKNLPCTCGKKPVIKIITKKPVTPNKEELKTNPRSRSAKLR 303 Query: 313 AG 314 Sbjct: 304 VA 305 >gi|306836499|ref|ZP_07469470.1| S-adenosyl-methyltransferase MraW [Corynebacterium accolens ATCC 49726] gi|304567589|gb|EFM43183.1| S-adenosyl-methyltransferase MraW [Corynebacterium accolens ATCC 49726] Length = 346 Score = 179 bits (454), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 118/329 (35%), Positives = 178/329 (54%), Gaps = 27/329 (8%) Query: 10 SSAIHHTIGD---HVPVLLEKVIALLNP---APGK--VILDATFGAGGYSRSFCKM--GS 59 ++ +++ + D HVPV+ E++ LL P A G V++DAT GAGG+S F + + Sbjct: 3 TTNLNYDVADNHGHVPVMRERMAELLRPGVEAAGSQAVLVDATLGAGGHSEYFLQTFPQA 62 Query: 60 NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ-----------DYVPDKGVDGVV 108 VI +DRD A+ + + +F A F +L D G+ G + Sbjct: 63 RVIGVDRDEQALQNASARLEPFGPRFCAVNARFDELGTAIAQGEGDIFDAARAHGIAGAL 122 Query: 109 FDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEK 167 FDLGVSSMQ+D +RGF+++ PLDMRM S G++A+DV+N + DL RIL G+E+ Sbjct: 123 FDLGVSSMQLDQAERGFAYKTDAPLDMRMDPSHGLTAADVLNSYSHGDLARILKTYGDER 182 Query: 168 QASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIE 226 A +IA A++K R+ PF T+ L L+ T+ ++ HPA R+FQALR+ VN E+E Sbjct: 183 FAGKIASAVLKEREKEPFSTSGRLVELLYSTIPAATRRTGGHPAKRTFQALRVEVNRELE 242 Query: 227 ELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAV 284 + L AL G + +S+ SLEDRLVK F S S + +P A Sbjct: 243 AIENVLPVITSALSIGARAVFMSYQSLEDRLVKAAFKELSTSTTPAGLPMDLPGTA--PE 300 Query: 285 FQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 F ++T+ +Q +V N R+ S ++RA Sbjct: 301 FATVTRGAEKASQAEVEENSRAASVRVRA 329 >gi|300811319|ref|ZP_07091816.1| S-adenosyl-methyltransferase MraW [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497683|gb|EFK32708.1| S-adenosyl-methyltransferase MraW [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 314 Score = 179 bits (453), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 112/307 (36%), Positives = 173/307 (56%), Gaps = 16/307 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77 H VLL + I L P G +DATFG GG++R N+I D+D +A+ Q Sbjct: 5 HTSVLLHETIDNLAPQSGGTYVDATFGGGGHARYLLSKLDKGNLIGFDQDQYAIDTAQSN 64 Query: 78 M-----RDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 D + + L FS L++ + G+DG+ +DLGVSS Q+D +RGFS++ Sbjct: 65 FAAFLKEDSQPRLQLVHNNFSHLKEELAKLRISGIDGIYYDLGVSSPQLDQAERGFSYRF 124 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM S A +VNQ + K L +L G+EK + +IA IV+RR++ P +TT Sbjct: 125 DARLDMRMDQSQDFDAYQLVNQYDQKQLADVLYRYGDEKFSRQIARKIVERRRAKPIETT 184 Query: 189 QDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L +I++ + ++ + HPA +SFQA+R+ VN+E++ L L A L GG + V Sbjct: 185 FELVEIIKEAIPAAARRSGGHPAKKSFQAIRVEVNHELDVLRASLEEAISLLNPGGRISV 244 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 ++F SLED++VK+ F S +V R M +P P + + + +K + ++E++A N R Sbjct: 245 ITFQSLEDKIVKQTFKKYS-EVEIPRGMPVVPEGIKPTL-RLVNRKPITASEEELAENNR 302 Query: 306 SRSAKLR 312 S SAKLR Sbjct: 303 SHSAKLR 309 >gi|269215884|ref|ZP_06159738.1| S-adenosyl-methyltransferase MraW [Slackia exigua ATCC 700122] gi|269130834|gb|EEZ61910.1| S-adenosyl-methyltransferase MraW [Slackia exigua ATCC 700122] Length = 318 Score = 179 bits (453), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 121/314 (38%), Positives = 180/314 (57%), Gaps = 20/314 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYS-RSFCKMGSN--VIALDRDPFAVSCGQE 76 H PVLL + + L P + +DAT G G+S + ++G++ +I +D+D A++ E Sbjct: 7 HTPVLLAECLEGLALKPRHIFVDATLGGAGHSCEAAGRLGADGLLIGIDQDDAALAAAGE 66 Query: 77 TMRDYKEQ----FSLFQATFSQLQDY-----VPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 +R E+ L + F L + VP G+DG++FDLGVSS Q+D RGFSF Sbjct: 67 RLRALPEKKRPRIKLLKGNFGDLDELLVRAQVP--GIDGILFDLGVSSPQLDVASRGFSF 124 Query: 128 QKSGPLDMRMSCS--GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 ++ PLDMRM +A+++VN A +L RI+ +EK A RIA IV R+ AP Sbjct: 125 REDAPLDMRMDPGRQTRNAAELVNSATESELARIIFENSDEKWARRIAQFIVAAREDAPI 184 Query: 186 QTTQDLSSLIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 +TT L +I+ + S R HPA R+FQALRI VN+E++ L +GL +A + L G Sbjct: 185 ETTGQLVEIIKAAIPASARRRGGHPAKRTFQALRIEVNSELDALKRGLEAAVRWLNPQGR 244 Query: 245 LIVVSFHSLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 + V+S+HSLEDR+VK FA SR+ + A P V + +T+K ++P + ++ Sbjct: 245 IAVISYHSLEDRIVKNLFADLSRTCICPPDLPVCVCGADP-VLKVMTRKPLLPAEGEIEG 303 Query: 303 NRRSRSAKLRAGMR 316 N R+RSAKLR R Sbjct: 304 NPRARSAKLRIACR 317 >gi|256821906|ref|YP_003145869.1| S-adenosyl-methyltransferase MraW [Kangiella koreensis DSM 16069] gi|256795445|gb|ACV26101.1| S-adenosyl-methyltransferase MraW [Kangiella koreensis DSM 16069] Length = 311 Score = 179 bits (453), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 102/259 (39%), Positives = 151/259 (58%), Gaps = 10/259 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVS 72 T +H VLLE+ + L P + +D TFG GG+SR+ S +I D+D A++ Sbjct: 3 TKQEHDAVLLEEAVEALVIDPNGIYIDCTFGRGGHSRAILSHLSEEGRLIGFDKDLQAIA 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128 G E ++ +F++ +FS L+ V +G V GV+ DLGVSS Q+D +RGFSF Sbjct: 63 VG-EQLQQEDARFNIVHESFSLLEQEVSKRGWVGEVTGVLMDLGVSSPQLDQAERGFSFM 121 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM + G +A + + +D+ GEE+ A RIA AIV++R AP Sbjct: 122 QDGPLDMRMDTTRGQTAEQWIANTDEEDMVWAFKAFGEERYAKRIARAIVEKRAKAPITR 181 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T+ L+ +I + + ++ HPATR FQA+RI VN E+++L L LK GG L+ Sbjct: 182 TKQLADIISEAHPRWEKHK-HPATRCFQAIRIAVNRELDDLKDTLEQVLNVLKVGGRLVA 240 Query: 248 VSFHSLEDRLVKKFFASRS 266 +SFHSLEDR+VK+F ++ Sbjct: 241 ISFHSLEDRIVKQFIQKQA 259 >gi|323356558|ref|YP_004222954.1| S-adenosylmethionine-dependent methyltransferase [Microbacterium testaceum StLB037] gi|323272929|dbj|BAJ73074.1| predicted S-adenosylmethionine-dependent methyltransferase [Microbacterium testaceum StLB037] Length = 317 Score = 179 bits (453), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 114/309 (36%), Positives = 167/309 (54%), Gaps = 9/309 (2%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74 H PVLLE+ LL PA P V +D T G GG+S +F + + +I LDRD A+ Sbjct: 7 HTPVLLERCAELLAPALERPDAVFVDGTLGMGGHSEAFLERFPTARLIGLDRDTDALRIA 66 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSG 131 E + + ++ +L + + + V GVD G++FDLGVSS+Q+D RGF++ + Sbjct: 67 GERLARFGDRVTLVHTVYDGIAEAVASAGVDKVDGILFDLGVSSLQLDEASRGFAYAQDA 126 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM G++A++V+ DL RI GEEK A R A AI+ R AP + + Sbjct: 127 PLDMRMDQTQGVTAAEVLATYGEGDLRRIFERYGEEKLAGRYARAIIAARAEAPLERSGQ 186 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L ++Q + HPA R FQALRI VN E+ L + + +A K L GG ++V+S+ Sbjct: 187 LVDVLQAATPAAVLRERHPAKRVFQALRIEVNAELSVLERTIPAALKVLGVGGRIVVLSY 246 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDRLVK+ FA + + H F+ + + + + E+ A N R+ + Sbjct: 247 QSLEDRLVKRVFAEAAASTAPRGLPVELPEHAPKFRLLVRGAELASDEERAANPRATPVR 306 Query: 311 LRAGMRTVE 319 LRA RT E Sbjct: 307 LRAAERTKE 315 >gi|270292146|ref|ZP_06198361.1| S-adenosyl-methyltransferase MraW [Streptococcus sp. M143] gi|270279674|gb|EFA25516.1| S-adenosyl-methyltransferase MraW [Streptococcus sp. M143] Length = 316 Score = 179 bits (453), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 112/309 (36%), Positives = 176/309 (56%), Gaps = 14/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 HV VLL + I +L+ P + +DAT G G+S S ++ A D+D A+ Q+ Sbjct: 7 HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66 Query: 77 TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y E+ + + F LQ + D GV DG+ +DLGVSS Q+D +RGFS++K Sbjct: 67 RLAPYIEKGMVTFIKDNFRHLQARLQDAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ + ++A +VVN + DL RI GE+K + +IA I + R+ P +TT + Sbjct: 127 PLDMRMNQGASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186 Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ +I K+ +K + HPA + FQA+RI VN+E+ + ++ A L G + V+ Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVI 245 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F S +V IP + P + + +++K ++P+ E++ N RS Sbjct: 246 TFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKM-ELVSRKPILPSAEELEANNRSH 304 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 305 SAKLRVARK 313 >gi|33593961|ref|NP_881605.1| S-adenosyl-methyltransferase MraW [Bordetella pertussis Tohama I] gi|33598269|ref|NP_885912.1| S-adenosyl-methyltransferase MraW [Bordetella parapertussis 12822] gi|33603180|ref|NP_890740.1| S-adenosyl-methyltransferase MraW [Bordetella bronchiseptica RB50] gi|42558972|sp|Q7VUP6|RSMH_BORPE RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|42558973|sp|Q7W4A7|RSMH_BORPA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|42558974|sp|Q7WFR5|RSMH_BORBR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|33564035|emb|CAE43301.1| S-adenosyl-methyltransferase [Bordetella pertussis Tohama I] gi|33566827|emb|CAE39042.1| S-adenosyl-methyltransferase [Bordetella parapertussis] gi|33568811|emb|CAE34569.1| S-adenosyl-methyltransferase [Bordetella bronchiseptica RB50] gi|332383379|gb|AEE68226.1| S-adenosyl-methyltransferase MraW [Bordetella pertussis CS] Length = 364 Score = 179 bits (453), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 126/333 (37%), Positives = 186/333 (55%), Gaps = 37/333 (11%) Query: 19 DHVPVLLEKVI-ALLNP------------APGK---------VILDATFGAGGYSRSF-C 55 +H PVLLE + AL+ P PG V +D TFG GG+SR+ Sbjct: 4 EHRPVLLEPTVDALVLPDFGGKGAHRQAGEPGPDAATRLQHGVFVDGTFGRGGHSRALLA 63 Query: 56 KMGSN--VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFD 110 ++G+ ++ D+DP A++ +E + + + F+ + + + +G VDGV+ D Sbjct: 64 RLGAQARLVVFDKDPQAIAVARE-LAAGDGRVEVVHGGFATMAEELTARGIEQVDGVMLD 122 Query: 111 LGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQA 169 LGVSS QID +RGFSF + GPLDMRM + G + +D + QA+V ++ ++ GEE+ A Sbjct: 123 LGVSSPQIDDAERGFSFMRDGPLDMRMDTTRGPTVADWLAQASVDEMREVIADYGEERFA 182 Query: 170 SRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELA 229 ++A AI R + P TT L+ + V + + HPATR+FQALRI++N E+EELA Sbjct: 183 FQVAKAIAACRATRPLHTTLQLAECVAGAVRTREKGQ-HPATRTFQALRIYINRELEELA 241 Query: 230 QGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP---SNAHPAVFQ 286 + L SA L GG L V+SFHSLEDR+VK+ A+ + + A +P S + + Sbjct: 242 RALASALDLLGPGGRLAVISFHSLEDRMVKQCIAAAA-RPAAAHARLPLRESELPQPLVR 300 Query: 287 SITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319 S+ K VV +VA N R+RSA LR RT E Sbjct: 301 SLGK--VVADDVEVAGNARARSAILRVAERTGE 331 >gi|325102881|ref|YP_004272535.1| S-adenosyl-methyltransferase MraW [Pedobacter saltans DSM 12145] gi|324971729|gb|ADY50713.1| S-adenosyl-methyltransferase MraW [Pedobacter saltans DSM 12145] Length = 302 Score = 179 bits (453), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 117/305 (38%), Positives = 170/305 (55%), Gaps = 16/305 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76 HVPV+L + I L+ P V +D TFG GG+SR K +G + ++A D+D V Q Sbjct: 6 HVPVMLSECIEGLDIKPDGVYVDVTFGGGGHSREIIKHLGEDGVLVAFDQD---VDAQQN 62 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + D ++F F L++ + G VDG++ DLGVSS Q D +RGFS + G L Sbjct: 63 RIAD--DRFVFIDQNFRYLKNNLRLHGLAPVDGILADLGVSSHQFDVPERGFSIRFDGDL 120 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM SG ++A V+ + + ++L +I GI GE + A +A IV R + T +DL Sbjct: 121 DMRMDQSGELTAKKVIGEYSEEELHKIFGIYGEIQNARSLAKTIVTARLNKEIVTIEDLK 180 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 S I K + +K N+ + FQALRI VN E+E L + L A + LK GG L+V+S+HS Sbjct: 181 SAIAKLIPRNKENKY--LAQVFQALRIEVNQEMEVLKEFLEQAAEVLKPGGRLVVMSYHS 238 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDRLVK F + + P F +TKK + ++E++ N RSRSA+LR Sbjct: 239 LEDRLVKNFMMKGKFSGQVEKDFYGNEIKP--FTVLTKKSITASEEELLRNNRSRSARLR 296 Query: 313 AGMRT 317 ++ Sbjct: 297 IAVKN 301 >gi|42518892|ref|NP_964822.1| S-adenosyl-methyltransferase MraW [Lactobacillus johnsonii NCC 533] gi|41583178|gb|AAS08788.1| S-adenosyl-methyltransferase MraW [Lactobacillus johnsonii NCC 533] Length = 322 Score = 179 bits (453), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 111/307 (36%), Positives = 177/307 (57%), Gaps = 15/307 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77 H VLL + I LNP G + +DATFG GG++R VI D+D +A+S +E+ Sbjct: 12 HKSVLLHETIDNLNPKDGGLYVDATFGGGGHARYLLSKLNKGTVIGFDQDEYAISMAKES 71 Query: 78 MRDY-----KEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + + L F L++ + + G+DG+ +DLGVSS Q D +RGFS++ Sbjct: 72 FAKELQVGAEPRLMLVHDNFCHLKENLVELGISDGIDGIYYDLGVSSPQFDQPERGFSYR 131 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 LDMRM S + A +VN + K+L+ +L G+EK + +IA IV RR+ P T Sbjct: 132 FDARLDMRMDQSQELDAYTIVNTWSQKELSDVLYKYGDEKFSRQIARKIVDRRKEKPIVT 191 Query: 188 TQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T DL +I+ + +++ + HPA +SFQA+R+ VN+E+ L + L A K LK GG + Sbjct: 192 TFDLVDVIKDAIPAYARRSGGHPAKKSFQAIRVAVNDELGVLQESLEEAIKLLKPGGRIS 251 Query: 247 VVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V++F S ED++VKK F S ++ M+P+++ P + + I++K ++ + +++ N R Sbjct: 252 VITFQSHEDKIVKKIFKKYSEVEIPRGMPMVPADSKPTL-RLISRKPIMASSDELEENNR 310 Query: 306 SRSAKLR 312 S SAKLR Sbjct: 311 SHSAKLR 317 >gi|118602334|ref|YP_903549.1| S-adenosyl-methyltransferase MraW [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|262826332|sp|A1AVX1|RSMH_RUTMC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|118567273|gb|ABL02078.1| S-adenosyl-methyltransferase MraW [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 307 Score = 179 bits (453), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 107/308 (34%), Positives = 175/308 (56%), Gaps = 16/308 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQE 76 H V+L + I LN + +DATFG GG+++ K+G +IA D+D A+ + Sbjct: 6 HQSVMLNESIGALNIKTDGIYIDATFGRGGHAQGILNKLGEQGKLIAFDQDINAIEYAHK 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 D + +L + FS + + + +G +DG++ DLGVSS Q+D RGFSF+ GP Sbjct: 66 NFTD--SRLTLIYSAFSNMLNIITQQGLMSKIDGILMDLGVSSPQLDNAQRGFSFKADGP 123 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ +G+SA+ +N AN +++ ++ G+EK++ IA I K +Q +TT L Sbjct: 124 LDMRMNQTTGMSATQWLNLANEEEIANVIYQFGDEKRSRHIATRIKKYQQKHTLETTLAL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ K V KN HPATR+FQA+RIF+N E+++L L ++ L+ G L ++SFH Sbjct: 184 AGIVSKVVKRQKNK--HPATRTFQAIRIFINQELKQLEDVLEQSKDILRKDGRLSIISFH 241 Query: 252 SLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 S+EDR+VK F SR + +I +++ K ++ +++ N+R+RSA Sbjct: 242 SIEDRIVKHFIQKNSRQKNLPKGLPIIDYKIEKTCLKNLGK--YFASKAEISRNKRARSA 299 Query: 310 KLRAGMRT 317 LR + Sbjct: 300 ILRVASKN 307 >gi|225568665|ref|ZP_03777690.1| hypothetical protein CLOHYLEM_04743 [Clostridium hylemonae DSM 15053] gi|225162593|gb|EEG75212.1| hypothetical protein CLOHYLEM_04743 [Clostridium hylemonae DSM 15053] Length = 311 Score = 179 bits (453), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 106/310 (34%), Positives = 172/310 (55%), Gaps = 23/310 (7%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 +H VLL++ I LN P +D T G GG++ C+ N ++ +D+D A++ Sbjct: 4 EHKSVLLDETINGLNIRPDGTYVDGTLGGGGHAYEICRHLGNKGSIVGIDQDAAAITAAG 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 ++D+ E+ ++ ++ + ++ + G VDG+V DLGVSS Q+D +RGFS+++ P Sbjct: 64 ARLKDFGEKVTIVRSNYCDMKSQLHKLGIDRVDGIVLDLGVSSYQLDTAERGFSYREDAP 123 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM ++A D+VN + DL R++ GE+K A IA I R+ +TT L Sbjct: 124 LDMRMDTRQKMTARDIVNDYSEMDLYRVIRDYGEDKFAKNIAKHIAAARRERSIETTGQL 183 Query: 192 SSLIQKTV---YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 + +I++ + Y K+ HP+ R+FQA+RI +N E+E L L LK GG L ++ Sbjct: 184 TEIIRQAIPMKYQKKSG--HPSKRTFQAIRIELNRELEVLRDSLDEMIDLLKPGGRLCII 241 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS------ITKKVVVPTQEDVAF 302 +FHSLEDR+VK F PS+ V +T+K ++P +E++ + Sbjct: 242 TFHSLEDRIVKSAFKKNENPCTC-----PSDFPVCVCGKESKGSILTRKPILPGEEELEY 296 Query: 303 NRRSRSAKLR 312 N R++SAKLR Sbjct: 297 NSRAKSAKLR 306 >gi|296117529|ref|ZP_06836113.1| S-adenosyl-methyltransferase MraW [Corynebacterium ammoniagenes DSM 20306] gi|295969260|gb|EFG82501.1| S-adenosyl-methyltransferase MraW [Corynebacterium ammoniagenes DSM 20306] Length = 363 Score = 179 bits (453), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 115/331 (34%), Positives = 182/331 (54%), Gaps = 28/331 (8%) Query: 20 HVPVLLEKVIALLNPA-----PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVS 72 HVPV+ ++ L+ PA +I+D T GAGG++ F + + VI +DRD +++ Sbjct: 31 HVPVMRARMAELIAPAVEAAGENAIIIDGTLGAGGHTEYFLQNFPQARVIGVDRDAASLA 90 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD-----------KGVDGVVFDLGVSSMQIDCG 121 E + + ++F F ++ + + GV G +FDLGVSSMQ+D Sbjct: 91 EAGERLSPFADRFVGVNERFDEIGSAIAEGDGEVFEIARQHGVAGALFDLGVSSMQLDQA 150 Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 DRGF+++ PLDMRM S GI+A+DV+N + +L IL + G+E+ A +IA A++K R Sbjct: 151 DRGFAYKVDAPLDMRMDPSAGITAADVLNTYSHGELAHILKMYGDERFAGKIASAVLKER 210 Query: 181 QSAPFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 PF T+ L L+ T+ ++ HPA R+FQALR+ VN E+E + Q + AL Sbjct: 211 DKQPFDTSARLVELLYNTIPAATRRTGGHPAKRTFQALRVEVNGELEAIEQVIPVITSAL 270 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297 GG ++ +S+ SLED+LVK F + S + +P A A F++IT+ T+ Sbjct: 271 NIGGRVVFMSYQSLEDKLVKSTFKTLTTSSTPAGLPMDLPGTA--AHFKTITRGSEKATE 328 Query: 298 EDVAFNRRSRSAKLRAGMRTVERSIEDDSFV 328 ++A N R+ S ++RA ER + SF+ Sbjct: 329 AEIAENPRAASVRVRA----FERLAGEHSFI 355 >gi|304439975|ref|ZP_07399868.1| S-adenosyl-methyltransferase MraW [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371467|gb|EFM25080.1| S-adenosyl-methyltransferase MraW [Peptoniphilus duerdenii ATCC BAA-1640] Length = 314 Score = 179 bits (453), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 110/308 (35%), Positives = 167/308 (54%), Gaps = 19/308 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 +H+PVL + I LN + +D T G G+S K + ++ +D+D FA+ + Sbjct: 5 EHIPVLFNETIEGLNIRENHIYMDCTIGGAGHSSEILKRLNGTGLLVGIDQDEFALYTSE 64 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +R+ + F LF F ++ + G VDG++ DLGVSS Q D RGFS+ P Sbjct: 65 KRLREIGDNFKLFNNNFELFRENLDSLGISKVDGILLDLGVSSHQFDEASRGFSYNYDAP 124 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ S I+A D+VN + + L +I GEEK + R+A IVK R S +TT +L Sbjct: 125 LDMRMNKSTRITAKDIVNTYSKEALMKIFYEYGEEKWSKRVAEFIVKARNSKTIETTFEL 184 Query: 192 SSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+ + +++ HPA R FQALRI N+E+ L + L ++L GG + V+SF Sbjct: 185 VEIIKAAIPKGARSGGPHPAKRIFQALRIETNDELGVLRRSLGDMIESLNPGGRICVISF 244 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV------FQSITKKVVVPTQEDVAFNR 304 HSLEDR+VK F K + + P + IT+K + ++E++A N Sbjct: 245 HSLEDRIVKDTF-----KYYYLDCICPPEVPVCTCNKKREIEIITRKPITASKEELAINN 299 Query: 305 RSRSAKLR 312 R+ SAKLR Sbjct: 300 RAHSAKLR 307 >gi|296140350|ref|YP_003647593.1| S-adenosyl-methyltransferase MraW [Tsukamurella paurometabola DSM 20162] gi|296028484|gb|ADG79254.1| S-adenosyl-methyltransferase MraW [Tsukamurella paurometabola DSM 20162] Length = 331 Score = 179 bits (453), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 112/307 (36%), Positives = 166/307 (54%), Gaps = 10/307 (3%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCG 74 HVPVL +V LL PA G + +DAT GAGG+S N VI LDRD A Sbjct: 10 HVPVLATRVRELLAPALAHDGAIYVDATLGAGGHSELILDTFPNARVIGLDRDTDAHDIA 69 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + +F+ + + + D G VD ++FDLGVSSMQ+D +RGF++ Sbjct: 70 GARLARFGGRFTAVHTRYDAIAAALDDLGIETVDAILFDLGVSSMQLDRAERGFAYSVDA 129 Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ ++A+DV+N + DL RIL G+E+ A +IA A++K R+ PF T+ Sbjct: 130 PLDMRMNADDPLTAADVLNTYSHGDLARILQRYGDERFAGKIASAVLKEREREPFTTSGR 189 Query: 191 LSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L L+ T+ ++ HPA R+FQALRI VN E+ L + A L G ++ +S Sbjct: 190 LVELLYATIPAPARRTGGHPAKRTFQALRIEVNAELASLESAVPQALDVLAPEGRIVFLS 249 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 + SLEDR+VK A+R+ + A F+ +T+ T E++A N+R+ Sbjct: 250 YQSLEDRIVKAELAARTRSTTPAGLPMDLPGTGATFELLTRGAERATDEEIAENQRAAPV 309 Query: 310 KLRAGMR 316 ++RA R Sbjct: 310 RMRAARR 316 >gi|194014300|ref|ZP_03052917.1| S-adenosyl-methyltransferase MraW [Bacillus pumilus ATCC 7061] gi|194013326|gb|EDW22891.1| S-adenosyl-methyltransferase MraW [Bacillus pumilus ATCC 7061] Length = 310 Score = 179 bits (453), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 112/304 (36%), Positives = 171/304 (56%), Gaps = 13/304 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H VLL++ + LN +D T G G+S S +I D+D A+ +E Sbjct: 4 HETVLLKETVDGLNVKEDGTYVDCTLGGAGHSSYLLSQLSEKGTLIGFDQDDAALDHARE 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + D K ++ F L++ + ++G VDGV+FDLGVSS Q+D +RGFS+ PL Sbjct: 64 KLADSKANILFIKSNFRYLKERLNEQGITSVDGVIFDLGVSSPQLDTPERGFSYHHDAPL 123 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S +SA VVN+ +DL RI GEEK + +IA I + R+ AP +TT +L Sbjct: 124 DMRMDQSAALSAKKVVNEWPFEDLVRIFYKYGEEKFSKQIARKIEEARKKAPIETTGELV 183 Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I++ + ++ HPA R FQA+RI VN+E++ + L A + L G + V++FH Sbjct: 184 DIIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALEQAIELLNPKGRISVITFH 243 Query: 252 SLEDRLVKKFFASRSGKVMAVRH---MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SLEDR+ K F S + + H +IP P + + IT+K +V +++++ N R+RS Sbjct: 244 SLEDRICKSTFREMSS-LPELPHGLPVIPEGLEPKL-KLITRKPIVASEQELEHNNRARS 301 Query: 309 AKLR 312 AKLR Sbjct: 302 AKLR 305 >gi|149198205|ref|ZP_01875252.1| putative S-adenosylmethionine-dependent methyltransferase [Lentisphaera araneosa HTCC2155] gi|149138807|gb|EDM27213.1| putative S-adenosylmethionine-dependent methyltransferase [Lentisphaera araneosa HTCC2155] Length = 311 Score = 178 bits (452), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 110/301 (36%), Positives = 170/301 (56%), Gaps = 8/301 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 H+PVL E+VI L P G +D T G GG+S G +V + LD D A+ E Sbjct: 6 HIPVLAEQVIDGLRPQNGGKFIDCTLGGGGHSSMILSSGPDVKLLGLDCDDNALRAASER 65 Query: 78 MRDYKEQFSLFQATF---SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + + ++F + F ++L+D VDG++ D+GVSS +D RGF+++++GPLD Sbjct: 66 LSSFGDRFKSKRLNFRDLAKLKDDAEWNQVDGILMDIGVSSHHLDEASRGFTYRENGPLD 125 Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM ++AS ++N+ +++ LT+I GE K+A R+A A+V R+ F T+ L+ Sbjct: 126 MRMDRRLKVTASMILNKESLEGLTKIFRDYGEMKEAYRLAKAVVADREKELFTHTEQLAG 185 Query: 194 LIQKTVYFSKNNRIHPA-TRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 L + + +PA T +FQALRI VN+E+ L G+++A LK GG L V+SFHS Sbjct: 186 LADRVCVNRNRRKRNPAPTLAFQALRIAVNDELGALESGMKAAFDLLKPGGRLAVISFHS 245 Query: 253 LEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK+FF ++ + I A + IT+K + ++A N R+ AKL Sbjct: 246 LEDRMVKEFFKDKATSCTCPPDLPICVCGSKAQMKIITRKPLTAESGELAENTRAACAKL 305 Query: 312 R 312 R Sbjct: 306 R 306 >gi|262527565|sp|P62471|RSMH_LACJO RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 315 Score = 178 bits (452), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 111/311 (35%), Positives = 178/311 (57%), Gaps = 15/311 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77 H VLL + I LNP G + +DATFG GG++R VI D+D +A+S +E+ Sbjct: 5 HKSVLLHETIDNLNPKDGGLYVDATFGGGGHARYLLSKLNKGTVIGFDQDEYAISMAKES 64 Query: 78 MRDY-----KEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + + L F L++ + + G+DG+ +DLGVSS Q D +RGFS++ Sbjct: 65 FAKELQVGAEPRLMLVHDNFCHLKENLVELGISDGIDGIYYDLGVSSPQFDQPERGFSYR 124 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 LDMRM S + A +VN + K+L+ +L G+EK + +IA IV RR+ P T Sbjct: 125 FDARLDMRMDQSQELDAYTIVNTWSQKELSDVLYKYGDEKFSRQIARKIVDRRKEKPIVT 184 Query: 188 TQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T DL +I+ + +++ + HPA +SFQA+R+ VN+E+ L + L A K LK GG + Sbjct: 185 TFDLVDVIKDAIPAYARRSGGHPAKKSFQAIRVAVNDELGVLQESLEEAIKLLKPGGRIS 244 Query: 247 VVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V++F S ED++VKK F S ++ M+P+++ P + + I++K ++ + +++ N R Sbjct: 245 VITFQSHEDKIVKKIFKKYSEVEIPRGMPMVPADSKPTL-RLISRKPIMASSDELEENNR 303 Query: 306 SRSAKLRAGMR 316 S SAKLR + Sbjct: 304 SHSAKLRVAEK 314 >gi|323340611|ref|ZP_08080863.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Lactobacillus ruminis ATCC 25644] gi|323091734|gb|EFZ34354.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Lactobacillus ruminis ATCC 25644] Length = 316 Score = 178 bits (452), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 112/306 (36%), Positives = 171/306 (55%), Gaps = 13/306 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 +HV VLL + + LN P V +D T G GG+++ S + + D+D A+ + Sbjct: 5 EHVTVLLNEAVEGLNIKPDGVYVDCTLGGGGHTKKILSELSEKGRLYSFDQDQTAIDYNE 64 Query: 76 ETMRDYKEQ--FSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 E +++ E+ +L ++ F + + + VDG+V+DLGVSS Q D G+RGFS+Q Sbjct: 65 EQLKNEIEKGRLTLIKSNFRNIASELEKRDVLSVDGIVYDLGVSSPQFDVGERGFSYQHD 124 Query: 131 GPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM + ++A +VN+ + DL RI GEEK A IA I K RQ+ +TT Sbjct: 125 AVLDMRMDQTNDLTAETIVNEWSYNDLVRIFVRYGEEKFAKSIARRIEKDRQNERIKTTG 184 Query: 190 DLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L LI++ + ++ HPA + FQA+RI VN+E+ L + L A L G + V+ Sbjct: 185 QLVELIKEGIPAKARRKGGHPAKKVFQAIRIAVNDELGVLEESLEEAFGLLSLHGRISVI 244 Query: 249 SFHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 +F SLEDRLVK F ++ ++ +IP P F+ I KK ++PT+E++ N R+ Sbjct: 245 TFQSLEDRLVKSMFREKTSLPELPPGLPVIPREMQPE-FKLINKKPILPTEEELENNHRA 303 Query: 307 RSAKLR 312 SAKLR Sbjct: 304 HSAKLR 309 >gi|119493501|ref|ZP_01624168.1| S-adenosyl-methyltransferase [Lyngbya sp. PCC 8106] gi|119452684|gb|EAW33864.1| S-adenosyl-methyltransferase [Lyngbya sp. PCC 8106] Length = 291 Score = 178 bits (452), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 123/308 (39%), Positives = 173/308 (56%), Gaps = 36/308 (11%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 H+PVL ++IA L G LDAT G GG+S + +V A+D+D A++ + Sbjct: 6 HIPVLSRELIAGLFVVAGGHYLDATVGGGGHSLLILQAAPDVRITAIDQDEVAIAATRAR 65 Query: 78 MRD----YKEQFSLFQATFSQLQDYVPDKGV--DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + + ++ ++ F+ DY P +G+ DG++ DLGV+S Q+D RGFSF+ S Sbjct: 66 LAEVEPCFADRVQFWRGNFA---DYQP-QGMQFDGIIADLGVNSSQLDTPTRGFSFRHSA 121 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ +SA+D++N + +L I GEE+ + RIA IV+ R PF+TT Sbjct: 122 PLDMRMNLQQSLSAADIINTWDEGELADIFFHYGEERLSRRIARRIVQNR---PFETTTQ 178 Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ +I + Y SK+ RIHPATR FQALRI VN E+ L L A + LK GG + V+ Sbjct: 179 LADVI-ASCYPSKSRYGRIHPATRVFQALRIAVNQELTALETFLSRAPQWLKLGGRIGVI 237 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDR VK+ F S S Q +TKK + ++A N RSRS Sbjct: 238 SFHSLEDRRVKQSFKSDSD-----------------LQVLTKKPIQAQALEIADNPRSRS 280 Query: 309 AKLRAGMR 316 AKLR R Sbjct: 281 AKLRLAER 288 >gi|163816702|ref|ZP_02208065.1| hypothetical protein COPEUT_02892 [Coprococcus eutactus ATCC 27759] gi|158447959|gb|EDP24954.1| hypothetical protein COPEUT_02892 [Coprococcus eutactus ATCC 27759] Length = 311 Score = 178 bits (452), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 102/302 (33%), Positives = 172/302 (56%), Gaps = 9/302 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VLLE+ I LN P + +D T G G+S + G +I +D+D A++ + Sbjct: 5 HKSVLLEETIDNLNIKPDGIYVDGTLGGAGHSEQIVRRLGEGGKLIGIDQDEDAIAAATK 64 Query: 77 TMRDYKEQFSLFQ---ATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + YK++ ++ + F ++ D + + VDG++ DLGVSS Q+D DRGF+++ PL Sbjct: 65 RLEPYKDKVTIVRDNYQNFRRILDELNIQKVDGILLDLGVSSYQLDNADRGFTYRVDAPL 124 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM +A D+VN+ +L RIL GEE+ A IA+ I K RQ TT++L+ Sbjct: 125 DMRMDNRQSKTAKDIVNEYPEAELFRILRDYGEERYAKSIAYHICKYRQDKEIDTTEELN 184 Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ ++ ++N + HP+ ++FQA+RI +N E++ L + +L GG L +++FH Sbjct: 185 DIIRGSIPAKARNGQGHPSKQTFQAIRIELNRELDVLRDSIDGMIASLNPGGRLCIITFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK F + + + + + + IT+K ++P + ++ N RS+S+K Sbjct: 245 SLEDRIVKTAFRKNENPCICPPNFPVCTCGRKSRGRVITRKPIIPGERELIENSRSKSSK 304 Query: 311 LR 312 LR Sbjct: 305 LR 306 >gi|149181747|ref|ZP_01860239.1| S-adenosyl-methyltransferase MraW [Bacillus sp. SG-1] gi|148850595|gb|EDL64753.1| S-adenosyl-methyltransferase MraW [Bacillus sp. SG-1] Length = 310 Score = 178 bits (452), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 107/309 (34%), Positives = 178/309 (57%), Gaps = 13/309 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMG--SNVIALDRDPFAVSCGQ 75 +H VLL++ + L+ V +D T G G+S ++G + D+D A+ + Sbjct: 3 EHTTVLLKETVDGLDIKEDGVYVDCTLGGAGHSEYLVSQLGVTGKLYCFDQDQTAIDHAK 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + Y ++ + ++ F +++ + ++GV DGV+FDLGVSS Q+D +RGFS+ P Sbjct: 63 EKLAPYLDRVTFIRSNFRFIKEELAERGVHQVDGVMFDLGVSSPQLDTPERGFSYHHDAP 122 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM G ++A +VVNQ + L RI GEEK + +IA I R+ +TT +L Sbjct: 123 LDMRMDLEGDLTAHEVVNQWPYEKLVRIFFRYGEEKFSKQIARKIEAAREIKSIETTGEL 182 Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 LI++ + ++ HPA R FQA+RI VN+E++ + + L + + LK G + V++F Sbjct: 183 VDLIKEGIPAPARRKGGHPAKRVFQAIRIAVNDELDAVEEALEKSIEILKPSGRISVITF 242 Query: 251 HSLEDRLVKKFFASR-SGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 HSLEDR+ K F + SG + H +P +A+ + +T+K ++P++E++ N R+R Sbjct: 243 HSLEDRITKTLFKEKASGPDLP--HGLPVIPDAYKPELKLVTRKPILPSEEELERNNRAR 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRVAEK 309 >gi|325264796|ref|ZP_08131525.1| S-adenosyl-methyltransferase MraW [Clostridium sp. D5] gi|324030088|gb|EGB91374.1| S-adenosyl-methyltransferase MraW [Clostridium sp. D5] Length = 315 Score = 178 bits (452), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 105/302 (34%), Positives = 173/302 (57%), Gaps = 9/302 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGS--NVIALDRDPFAVSCGQE 76 H VLLE+ + L P + +DAT G GG++ C K+ S + I +D+D A+ Sbjct: 9 HTSVLLEETVDGLAVKPDGIYVDATLGGGGHAFEVCSKLSSKGSFIGIDQDAAAIEAASA 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + D+ E+ ++ ++ + ++ + + G VDG+V DLGVSS Q+D +RGFS++ PL Sbjct: 69 RLLDFGERVTIIRSNYCDMKPRLHEIGIDKVDGIVLDLGVSSYQLDTAERGFSYRTDAPL 128 Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + +A D+VN + DL R++ GE++ A IA IV R P +TT L+ Sbjct: 129 DMRMDQRQMMTAKDIVNDYSESDLYRVIRDYGEDRFAKNIAKHIVIARGKGPIETTGQLN 188 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+K + + HP+ R++QA+RI +N E++ L + L + LK GG + +++FH Sbjct: 189 EIIRKAIPMKIQKTSGHPSKRTYQAIRIELNRELDVLRETLDDMIELLKPGGRICIITFH 248 Query: 252 SLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK F H + + + + IT+K ++P++E++ N RS+SAK Sbjct: 249 SLEDRIVKSAFRKNENPCTCPSHFPVCVCGNVSKGKVITRKPILPSEEELEENSRSKSAK 308 Query: 311 LR 312 LR Sbjct: 309 LR 310 >gi|311748596|ref|ZP_07722381.1| S-adenosyl-methyltransferase MraW [Algoriphagus sp. PR1] gi|126577120|gb|EAZ81368.1| S-adenosyl-methyltransferase MraW [Algoriphagus sp. PR1] Length = 303 Score = 178 bits (452), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 112/304 (36%), Positives = 167/304 (54%), Gaps = 15/304 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77 H+PV+L + L P + +D TFG GG+SR K ++ D+D A++ E+ Sbjct: 7 HIPVMLPQCTEGLAIDPNGIYVDVTFGGGGHSREILKHLDKGHLYGFDQDEDAIANIPES 66 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 E F+ QA F L+ Y+ GV DG++ DLG+SS QID RGFS + SG LD Sbjct: 67 -----ENFTFVQANFRDLKRYLRLHGVKKVDGILADLGISSHQIDEPSRGFSTRFSGDLD 121 Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM+ S +SA +V+N L ++ GI GE + A +A A+V R + PF+TT+ ++ Sbjct: 122 MRMNQSAELSAKEVLNTYEAHQLHKVFGIYGEIRNAKTLAQAVVSERAAQPFETTEGFTA 181 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 ++K Y + + FQALRI VN+E+ L + L + LK G L+V+S+HSL Sbjct: 182 FLKK--YAPRGKDFKYYAQVFQALRIEVNDEMGALEEMLLDSVDLLKPEGRLVVMSYHSL 239 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 EDRLVK + + + P + +T+K V+ +E+VA N R+RSAKLR Sbjct: 240 EDRLVKNLIQKGKFQGEVEKDFYGNMIRP--LEPVTRKAVIADEEEVARNPRARSAKLRV 297 Query: 314 GMRT 317 +T Sbjct: 298 AKKT 301 >gi|295677772|ref|YP_003606296.1| S-adenosyl-methyltransferase MraW [Burkholderia sp. CCGE1002] gi|295437615|gb|ADG16785.1| S-adenosyl-methyltransferase MraW [Burkholderia sp. CCGE1002] Length = 313 Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 124/311 (39%), Positives = 182/311 (58%), Gaps = 21/311 (6%) Query: 20 HVPVLL-EKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGS--NVIALDRDPFAVSCGQ 75 H VLL E V AL+ A G + D TFG GG+SR ++G +IA D+DP A++ Q Sbjct: 7 HRTVLLNEAVDALVTRADGTYV-DGTFGRGGHSRLVLERLGEAGRLIAFDKDPLAIATAQ 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F++ +F+ L+ + ++GV GV+ DLGVSS Q+D +RGFSF+ GP Sbjct: 66 KIA---DPRFAIVHESFASLRAAMAERGVGRVSGVLLDLGVSSPQVDDPERGFSFRADGP 122 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQT 187 LDMRM + G SA+D + +A V++LT ++ GEE+ A +IA A+V RR + P + Sbjct: 123 LDMRMDPTRGESAADWLARATVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLVS 182 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T +L+ ++ V + + PATR+FQA+RI VN E+ EL L +A L+ GG L+V Sbjct: 183 TGELAQIVANVVKTREKGK-DPATRTFQAIRIHVNQELAELQVVLEAALSLLEQGGRLVV 241 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA--HPAVFQSITKKVVVPTQEDVAFNRR 305 +SFHSLEDR+VK+F + + AV +P A P+ I +V E VA N R Sbjct: 242 ISFHSLEDRIVKRFMQAHA-SAPAVDRRLPIRAVDLPSPPLKIIGRVFASDAE-VADNPR 299 Query: 306 SRSAKLRAGMR 316 +RSA +R R Sbjct: 300 ARSAVMRVAER 310 >gi|224368376|ref|YP_002602539.1| S-adenosyl-methyltransferase MraW [Desulfobacterium autotrophicum HRM2] gi|263447343|sp|C0Q8N5|RSMH_DESAH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|223691092|gb|ACN14375.1| MraW [Desulfobacterium autotrophicum HRM2] Length = 312 Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 112/309 (36%), Positives = 167/309 (54%), Gaps = 10/309 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYS-RSFCKMGSN--VIALDRDPFAVSCGQ 75 +H V+ +V L+ PG+ +D T G G++ S + N +I +D+D A+ Sbjct: 4 EHRSVMPREVRDGLDLKPGETCVDCTLGGSGHAVTSLAAVLPNGRLIGIDQDLDAIENAH 63 Query: 76 ETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 D S+F FS L D + KGVDG++ DLG+S Q+ G RGFSF+ P Sbjct: 64 RVFADDMANVSIFHDNFSHLPAILDSLGIKGVDGILLDLGLSLHQLRKGQRGFSFKGDEP 123 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + ++A+D+VN + L I GEEK + +IA AIV++R SAP +L Sbjct: 124 LDMRMDMRTALTAADLVNTLEERALVDIFFKYGEEKMSRKIARAIVRQRASAPITRNCEL 183 Query: 192 SSLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 + +++ + +IHPATR FQALRI VN E+E+L + L + L GG + ++S Sbjct: 184 AEIVRAAIPAKIVHQQKIHPATRVFQALRISVNRELEQLERFLETFVDFLNPGGRICIIS 243 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPS-NAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK+ F + R +S+TK+ V+PT E++ N +RS Sbjct: 244 FHSLEDRMVKRRFRALEQGCTCPRDFPECVCGFKPRLKSVTKRAVMPTPEEIEINPMARS 303 Query: 309 AKLRAGMRT 317 A+LR R Sbjct: 304 ARLRVAWRV 312 >gi|293402027|ref|ZP_06646166.1| S-adenosyl-methyltransferase MraW [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304419|gb|EFE45669.1| S-adenosyl-methyltransferase MraW [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 311 Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 113/305 (37%), Positives = 171/305 (56%), Gaps = 9/305 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74 + H VLL++ I L+ + +D T G GG+S K ++ A DRD A+ Sbjct: 1 MNKHYSVLLQESIEGLHIQHDGIYVDGTLGRGGHSCEILKQIPDGHLYAFDRDASAIEES 60 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + F+ + FS L++ + GV DG+V DLGVSS Q D +RGFS++ Sbjct: 61 TPRLLQVADNFTCIHSPFSHLKEELSAYGVNRIDGLVLDLGVSSPQFDEAERGFSYRFDA 120 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S ++A ++VN + +DL +I GEE A +IA I K+R P +TT + Sbjct: 121 PLDMRMDQSQALNAYEIVNTWSYQDLVKIFYTYGEETFAKQIARNIEKKRIDKPIRTTFE 180 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I+ ++ N + HPA + FQA+RI VN+E+ EL + L+ A + L G + V+S Sbjct: 181 LVDVIKASLPAKVLNKKGHPAKKVFQAIRIAVNDELRELEEVLQEALQMLNPHGRICVIS 240 Query: 250 FHSLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 F SLEDR+VK+ F ASR + ++PS+ A ++ I KK + +E++ N RS Sbjct: 241 FQSLEDRIVKEAFQTASRPKQYDKRIPILPSDMEEAPYKLINKKPITAQEEELMENNRSH 300 Query: 308 SAKLR 312 SAKLR Sbjct: 301 SAKLR 305 >gi|167740320|ref|ZP_02413094.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 14] gi|226199616|ref|ZP_03795172.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei Pakistan 9] gi|225928362|gb|EEH24393.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei Pakistan 9] Length = 313 Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 120/312 (38%), Positives = 183/312 (58%), Gaps = 21/312 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMG--SNVIALDRDPFAVSCGQE 76 H VLL++ + L P V +D TFG GG+SR+ ++G +IA D+DP A+ E Sbjct: 7 HRTVLLDEAVDALVTRPDGVYVDGTFGRGGHSRAVLARLGYAGRLIAFDKDPRAIETA-E 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ D + F + +F+ ++ + +G V GV+ DLGVSS Q+D RGFSF+ +GPL Sbjct: 66 SIEDAR--FEIVHDSFAAMKGALDARGIGRVSGVLLDLGVSSPQVDDPARGFSFRANGPL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTT 188 DMRM + G SA++ + +A+V++LT ++ GEE+ A +IA AIV RR + P +T Sbjct: 124 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRLGPLDST 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ ++ V + + PATR+FQA+RI VN E+ +L L +A L+ GG L+V+ Sbjct: 184 GELAQIVGHVVKTREKGK-DPATRTFQAIRIHVNQELADLQVVLEAALSLLEQGGRLVVI 242 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNRR 305 SFHSLEDR+VK+F + + AV +P A A S K++ P +VA N R Sbjct: 243 SFHSLEDRIVKRFLQAHA-SAPAVDRRLPIRA--ADLPSPPLKLLGRMFPNDAEVAANPR 299 Query: 306 SRSAKLRAGMRT 317 +RSA +R R Sbjct: 300 ARSAVMRIAERV 311 >gi|126454576|ref|YP_001067794.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 1106a] gi|134280340|ref|ZP_01767051.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 305] gi|167847424|ref|ZP_02472932.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei B7210] gi|167896013|ref|ZP_02483415.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 7894] gi|167904399|ref|ZP_02491604.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei NCTC 13177] gi|167920627|ref|ZP_02507718.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei BCC215] gi|242314397|ref|ZP_04813413.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 1106b] gi|254180538|ref|ZP_04887136.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 1655] gi|254199129|ref|ZP_04905544.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei S13] gi|263446924|sp|A3NZM3|RSMH_BURP0 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|126228218|gb|ABN91758.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 1106a] gi|134248347|gb|EBA48430.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 305] gi|169656959|gb|EDS88356.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei S13] gi|184211077|gb|EDU08120.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 1655] gi|242137636|gb|EES24038.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 1106b] Length = 313 Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 120/312 (38%), Positives = 183/312 (58%), Gaps = 21/312 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMG--SNVIALDRDPFAVSCGQE 76 H VLL++ + L P V +D TFG GG+SR+ ++G +IA D+DP A+ E Sbjct: 7 HRTVLLDEAVDALVTRPDGVYVDGTFGRGGHSRAVLARLGDAGRLIAFDKDPRAIETA-E 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ D + F + +F+ ++ + +GV GV+ DLGVSS Q+D RGFSF+ +GPL Sbjct: 66 SIEDAR--FEIVHDSFAAMKGALDARGVGRVSGVLLDLGVSSPQVDDPARGFSFRANGPL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTT 188 DMRM + G SA++ + +A+V++LT ++ GEE+ A +IA AIV RR + P +T Sbjct: 124 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRLGPLDST 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ ++ V + + PATR+FQA+RI VN E+ +L L +A L+ GG L+V+ Sbjct: 184 GELAQIVGHVVKTREKGK-DPATRTFQAIRIHVNQELADLQVVLEAALSLLEQGGRLVVI 242 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNRR 305 SFHSLEDR+VK+F + + AV +P A A S K++ P +VA N R Sbjct: 243 SFHSLEDRIVKRFLQAHA-SAPAVDRRLPIRA--ADLPSPPLKLLGRMFPNDAEVAANPR 299 Query: 306 SRSAKLRAGMRT 317 +RSA +R R Sbjct: 300 ARSAVMRIAERV 311 >gi|194476804|ref|YP_002048983.1| methyltransferase [Paulinella chromatophora] gi|171191811|gb|ACB42773.1| methyltransferase [Paulinella chromatophora] Length = 283 Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 118/302 (39%), Positives = 169/302 (55%), Gaps = 28/302 (9%) Query: 21 VPVLLEKVI-ALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 +PVL +V+ A + P VILD T G GG+S +I LD+DP A + Sbjct: 1 MPVLASQVVQAFASLPPYGVILDCTVGGGGHSSLLLNNHPKLRIIGLDQDPDAWLKANQY 60 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 + ++ + L + F+ D+VP + + GV+ DLGVSS Q++ RGFSF+ GPLDMRM Sbjct: 61 LASFRYRTRLIKTNFA---DFVPVEPLSGVLVDLGVSSHQLEVAQRGFSFRFEGPLDMRM 117 Query: 138 SCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 + S G +A+++VN K+L ++ GE++ + RIA IV++R PF +T+DL+ +I Sbjct: 118 NPSKGETAAELVNYLGEKELADLIFSYGEDRFSRRIARRIVQKR---PFNSTKDLAYVIA 174 Query: 197 KTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 S+ RIHPATR+FQALRI VNNE+E L L L GG++ ++SFHSLED Sbjct: 175 GCYSPKSRRGRIHPATRTFQALRIAVNNEMEVLDHLLSRIPDWLIPGGIVAIISFHSLED 234 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 R VK+ F + + IT K +V + + N RSRSAKLR Sbjct: 235 RRVKQAFLTDER-----------------LERITNKPLVADENERNDNSRSRSAKLRIAK 277 Query: 316 RT 317 RT Sbjct: 278 RT 279 >gi|254191020|ref|ZP_04897526.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei Pasteur 52237] gi|157938694|gb|EDO94364.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei Pasteur 52237] Length = 313 Score = 178 bits (451), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 120/312 (38%), Positives = 183/312 (58%), Gaps = 21/312 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMG--SNVIALDRDPFAVSCGQE 76 H VLL++ + L P V +D TFG GG+SR+ ++G +IA D+DP A+ E Sbjct: 7 HRTVLLDEAVDALVTRPDGVYVDGTFGRGGHSRAVLARLGDAGRLIAFDKDPRAIETA-E 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ D + F + +F+ ++ + +G V GV+ DLGVSS Q+D RGFSF+ +GPL Sbjct: 66 SIEDAR--FEIVHDSFAAMKGALDARGIGRVSGVLLDLGVSSPQVDDPARGFSFRANGPL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTT 188 DMRM + G SA++ + +A+V++LT ++ GEE+ A +IA AIV RR + P +T Sbjct: 124 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRLGPLDST 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ ++ V + + PATR+FQA+RI VN E+ +L L +A L+ GG L+V+ Sbjct: 184 GELAQIVGHVVKTREKGK-DPATRTFQAIRIHVNQELADLQVVLEAALSLLEQGGRLVVI 242 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNRR 305 SFHSLEDR+VK+F + + AV +P A A S K++ P +VA N R Sbjct: 243 SFHSLEDRIVKRFLQAHA-SAPAVDRRLPIRA--ADLPSPPLKLLGRMFPNDAEVAANPR 299 Query: 306 SRSAKLRAGMRT 317 +RSA +R R Sbjct: 300 ARSAVMRIAERV 311 >gi|307711383|ref|ZP_07647801.1| S-adenosyl-methyltransferase MraW [Streptococcus mitis SK321] gi|307616801|gb|EFN95983.1| S-adenosyl-methyltransferase MraW [Streptococcus mitis SK321] Length = 316 Score = 178 bits (451), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 111/309 (35%), Positives = 177/309 (57%), Gaps = 14/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 HV VLL + I +L+ P + +DAT G G+S S ++ A D+D A+ Q+ Sbjct: 7 HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66 Query: 77 TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y E+ + + F LQ + + GV DG+ +DLGVSS Q+D +RGFS++K Sbjct: 67 RLAPYIEKGMVTFIKDNFRHLQTRLHEAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ + ++A +VVN + DL RI GE+K + +IA I + R+ P +TT + Sbjct: 127 PLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186 Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ +I K+ +K + HPA + FQA+RI VN+E+ + ++ A + L G + V+ Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMEMLALDGRISVI 245 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F S +V IP + P + + +++K ++P+ E++ N RS Sbjct: 246 TFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKM-ELVSRKPILPSAEELEANNRSH 304 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 305 SAKLRVARK 313 >gi|160935714|ref|ZP_02083089.1| hypothetical protein CLOBOL_00604 [Clostridium bolteae ATCC BAA-613] gi|158441458|gb|EDP19168.1| hypothetical protein CLOBOL_00604 [Clostridium bolteae ATCC BAA-613] Length = 315 Score = 178 bits (451), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 101/302 (33%), Positives = 177/302 (58%), Gaps = 10/302 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN-VIALDRDPFAVSCGQET 77 H VLL + + LN PG + +D T G GG++ CK +GS +I +D+D A+ + Sbjct: 8 HKSVLLYETVGSLNIKPGGLYVDGTLGGGGHAYEVCKRLGSGKLIGIDQDADAIEAAGKR 67 Query: 78 MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + ++++ ++ ++ ++ +++ + + +GVDG+ DLGVSS Q+D RGF++++ PLD Sbjct: 68 LLPFQDKVTIVRSNYANIKEVLKELEIEGVDGIYLDLGVSSYQLDTASRGFTYREDAPLD 127 Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM + ++A+ ++N + +L RI+ GE+ A IA IV+ R P +TT +L+ Sbjct: 128 MRMDQRNDVTAAHIINTYSEMELYRIIRDYGEDNFAKNIAKHIVRARGEHPIETTGELAE 187 Query: 194 LIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ + + HPA R+FQA+RI N+E+E L Q + + L GG L +++FHS Sbjct: 188 IIKGAIPARVRATGGHPAKRTFQAIRIECNHELEVLEQSIDTMIDLLNPGGRLSIITFHS 247 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 LEDR+VK F + H P + + +++K ++P++E++ N RS+SAK Sbjct: 248 LEDRIVKSRFRLNENPCICP-HDFPVCVCGRKSKGKVVSRKPILPSEEELEENSRSKSAK 306 Query: 311 LR 312 LR Sbjct: 307 LR 308 >gi|27904707|ref|NP_777833.1| hypothetical protein bbp206 [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|29839463|sp|P59522|RSMH_BUCBP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|27904104|gb|AAO26938.1| hypothetical protein bbp_206 [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 315 Score = 178 bits (451), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 111/311 (35%), Positives = 167/311 (53%), Gaps = 18/311 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76 H PVLL + I L+ + +DATFG GG+S+ K +G N + ++D+DP+A+ + Sbjct: 7 HTPVLLNETIQNLDIKNDGIYIDATFGYGGHSKEILKHLGKNGKLYSIDQDPYAIKIANK 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 D +F++ FS + Y V+G++ DLG+SSMQI+ +RGFSF GP Sbjct: 67 LKND--TRFNIIHGKFSNILKYSNKNKIRGKVNGILLDLGMSSMQINNPNRGFSFISDGP 124 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ +GI A + + N+ L +L GEE + +IA+ I+ + T +L Sbjct: 125 LDMRMNPNTGIPAYMWLKKTNLTTLYHVLKKYGEEPFSKKIAYNIIAYNKKKTITRTLEL 184 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 S +I ++ K R HPA R FQA+RI++N+EI EL Q L L GG L+++SFH Sbjct: 185 SKIITNSIPIKKY-RKHPARRVFQAIRIYINHEIYELQQALEHVLNILIPGGKLLILSFH 243 Query: 252 SLEDRLVKKFFASRSGKV-----MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 SLEDR VKKF S +A+ + + ITK + P+ ++ N R+ Sbjct: 244 SLEDRTVKKFMIKYSKPPFVPPGLAITETQLKSLANKQLKIITK--IFPSTIEIRKNPRA 301 Query: 307 RSAKLRAGMRT 317 SA LR + Sbjct: 302 HSAILRVAQKN 312 >gi|238855278|ref|ZP_04645597.1| S-adenosyl-methyltransferase MraW [Lactobacillus jensenii 269-3] gi|260664637|ref|ZP_05865489.1| MraW methylase [Lactobacillus jensenii SJ-7A-US] gi|282932429|ref|ZP_06337854.1| S-adenosyl-methyltransferase MraW [Lactobacillus jensenii 208-1] gi|313471907|ref|ZP_07812399.1| S-adenosyl-methyltransferase MraW [Lactobacillus jensenii 1153] gi|238832170|gb|EEQ24488.1| S-adenosyl-methyltransferase MraW [Lactobacillus jensenii 269-3] gi|239529171|gb|EEQ68172.1| S-adenosyl-methyltransferase MraW [Lactobacillus jensenii 1153] gi|260561702|gb|EEX27674.1| MraW methylase [Lactobacillus jensenii SJ-7A-US] gi|281303378|gb|EFA95555.1| S-adenosyl-methyltransferase MraW [Lactobacillus jensenii 208-1] Length = 317 Score = 178 bits (451), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 113/312 (36%), Positives = 175/312 (56%), Gaps = 17/312 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H VLL + I LN + +DATFG GG++R +N ++ D+D +A++ ++ Sbjct: 7 HTSVLLRETIDNLNVKDNGLYVDATFGGGGHARYLLSKLNNGILVGFDQDNYAINAAKDN 66 Query: 78 MRDY-----KEQFSLFQATFSQLQDYVP----DKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 DY + + FS + + + + G+DG+ +DLGVSS Q D DRGFS++ Sbjct: 67 FYDYLSDNHQPHLIMVHDNFSHVTENLNKLGFNDGIDGIYYDLGVSSPQFDQPDRGFSYR 126 Query: 129 KSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 LDMRM+ + A VVN + L IL G+EK + +IA IV+RRQ P +T Sbjct: 127 FDARLDMRMNQEQELDAYQVVNSYSQSQLADILYQYGDEKFSRQIARKIVQRRQQKPIET 186 Query: 188 TQDLSSLIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T +L LI++ + +K HPA +SFQA+R+ VN+E++ L L+ A + LK GG + Sbjct: 187 TFELVELIKEAIPAAKRRTGGHPAKKSFQAIRVEVNHELDSLKASLQEAIELLKPGGRIS 246 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 V++F S ED++VKK F S +V R + IP N P + + + +K ++ T ++A N Sbjct: 247 VITFQSHEDKIVKKIFKQNS-EVEVPRGIPVIPDNLKPKL-KLVNRKPILATASELADNN 304 Query: 305 RSRSAKLRAGMR 316 RS SAKLR + Sbjct: 305 RSHSAKLRVAEK 316 >gi|114321350|ref|YP_743033.1| S-adenosyl-methyltransferase MraW [Alkalilimnicola ehrlichii MLHE-1] gi|123127253|sp|Q0A6J4|RSMH_ALHEH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|114227744|gb|ABI57543.1| S-adenosyl-methyltransferase MraW [Alkalilimnicola ehrlichii MLHE-1] Length = 317 Score = 178 bits (451), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 117/310 (37%), Positives = 169/310 (54%), Gaps = 18/310 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H PVLL++ + L P V +D TFG GG++ ++G + +DRDP A++ + Sbjct: 11 HRPVLLDEALDALAIRPHGVYVDGTFGRGGHAAGILARLGPEGRLWLVDRDPEAIAVARA 70 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 D + ++ F +L + G VDG++ DLGVSS Q+D +RGFSF + GP Sbjct: 71 RHGD-DPRCTIAHGRFDELPGRLEAAGLLHRVDGLLLDLGVSSPQLDSAERGFSFMREGP 129 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF-QTTQD 190 LDMRM S G++A + + Q + K L+R L GEE+ + RIA A+++ R+ +TT Sbjct: 130 LDMRMDTSRGVTAREWLEQVDEKTLSRALRDYGEERHSRRIARALIRAREDGALPETTGA 189 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ LI + V HPATRSFQALRI +N E+E L L L GG L+V+SF Sbjct: 190 LARLIAENVPGRPEPGKHPATRSFQALRIAINGELEALDALLERICDLLAPGGRLVVISF 249 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPS-NAHPAVFQSITKKV---VVPTQEDVAFNRRS 306 HSLEDR VK++ +S V + PS P Q + V + P + + A N R+ Sbjct: 250 HSLEDRRVKRYIRKQS----TVGDLPPSVPVAPEALQPRLRSVGRALRPGEAEQAANPRA 305 Query: 307 RSAKLRAGMR 316 RSA +R R Sbjct: 306 RSAVMRVAER 315 >gi|315652174|ref|ZP_07905171.1| exopolyphosphatase [Eubacterium saburreum DSM 3986] gi|315485569|gb|EFU75954.1| exopolyphosphatase [Eubacterium saburreum DSM 3986] Length = 311 Score = 178 bits (451), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 109/308 (35%), Positives = 174/308 (56%), Gaps = 8/308 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQE 76 +H VLL++VI LN P +D T G G++ K G +I +D+D A+ E Sbjct: 4 NHKSVLLDEVIESLNIKPDGYYVDGTLGGAGHALEVIKRLKGGRLIGIDQDADAIKAATE 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + DYK + + + + ++D + +G VDG+ DLGVSS Q+D DRGF+++ PL Sbjct: 64 RLIDYKNRVIIVRDNYVNIEDILKREGIDKVDGIYVDLGVSSYQLDTADRGFTYRFDAPL 123 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + + ASD+VN + +L ++ GE++ A IA IV+ R +TT +L Sbjct: 124 DMRMDDRNELKASDIVNNYSEAELFHVIRDYGEDRFAKNIAKHIVEYRNKKKIETTFELV 183 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + + HPA R+FQA+RI +N E+E L + + LK GG L V++FH Sbjct: 184 DIIKSAIPMKIQVTGGHPAKRTFQAIRIELNKELEVLKDSIDVMIELLKPGGRLSVITFH 243 Query: 252 SLEDRLVKKFF-ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK+ F + S V + + + + + IT+K V+P++E++ N R++SAK Sbjct: 244 SLEDRIVKQAFKKAESPCVCPKKFPVCVCGNKSKGRVITRKAVLPSKEELEENSRAKSAK 303 Query: 311 LRAGMRTV 318 LR + V Sbjct: 304 LRVFEKEV 311 >gi|322391390|ref|ZP_08064860.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus peroris ATCC 700780] gi|321145816|gb|EFX41207.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus peroris ATCC 700780] Length = 316 Score = 178 bits (451), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 111/309 (35%), Positives = 178/309 (57%), Gaps = 14/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 HV V+L + I +L+ P + +DAT G G+S S ++ A D+D A+ Q+ Sbjct: 7 HVTVMLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66 Query: 77 TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y E+ + + F L+D + D GV DG+ +DLGVSS Q+D +RGFS++K Sbjct: 67 RLAPYIEKGMVTFIKDNFRHLKDRLHDLGVTEIDGICYDLGVSSPQLDQRERGFSYKKDA 126 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ + ++A +VVN + DL RI GE+K + +IA I + R+ P +TT + Sbjct: 127 PLDMRMNQEASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQARELKPIETTTE 186 Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ +I K+ +K + HPA + FQA+RI VN+E+ + ++ A + L G + V+ Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIELLALDGRISVI 245 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F S +V IP + P + +++K ++P++E++ N RS Sbjct: 246 TFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKM-GLVSRKPILPSKEELEANNRSH 304 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 305 SAKLRVARK 313 >gi|237813927|ref|YP_002898378.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei MSHR346] gi|237506330|gb|ACQ98648.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei MSHR346] Length = 313 Score = 178 bits (451), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 118/311 (37%), Positives = 183/311 (58%), Gaps = 19/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMG--SNVIALDRDPFAVSCGQE 76 H VLL++ + L P V +D TFG GG+SR+ ++G +IA D+DP A+ E Sbjct: 7 HRTVLLDEAVDALVTRPDGVYVDGTFGRGGHSRAVLARLGDAGRLIAFDKDPRAIETA-E 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ D + F + +F+ ++ + +GV GV+ DLGVSS Q+D RGFSF+ +GPL Sbjct: 66 SIEDAR--FEIVHDSFAAMKGALDARGVGRVSGVLLDLGVSSPQVDDPARGFSFRANGPL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTT 188 DMRM + G SA++ + +A+V++LT ++ GEE+ A +IA AIV RR + P +T Sbjct: 124 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRLGPLDST 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ ++ V + + PATR+FQA+RI VN E+ +L L +A L+ GG L+V+ Sbjct: 184 GELAQIVGHVVKTREKGK-DPATRTFQAIRIHVNQELADLQVVLEAALSLLEQGGRLVVI 242 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA--HPAVFQSITKKVVVPTQEDVAFNRRS 306 SFHSLEDR+VK+F + + AV +P A P+ + + + P +VA N R+ Sbjct: 243 SFHSLEDRIVKRFLQAHA-SAPAVDRRLPIRAADRPSPPLKLLGR-MFPNDAEVAANPRA 300 Query: 307 RSAKLRAGMRT 317 RSA +R R Sbjct: 301 RSAVMRIAERV 311 >gi|227431984|ref|ZP_03914004.1| S-adenosyl-methyltransferase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352269|gb|EEJ42475.1| S-adenosyl-methyltransferase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 312 Score = 178 bits (451), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 113/309 (36%), Positives = 173/309 (55%), Gaps = 13/309 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76 +HV VLL + IALL+ P +DAT G GG++ K + + D+D A+ E Sbjct: 4 EHVTVLLHEAIALLDIKPEGTYVDATLGGGGHTGEILKQLTTGTLYSFDQDDTAIQYNVE 63 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 D + + F L + D GV +G+V+DLGVSS+Q D G RGFS++ Sbjct: 64 QYADEIAAGKLVIIHKNFRTLTSALADYGVTAVNGIVYDLGVSSVQFDDGQRGFSYKYDA 123 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM ++A +VN+ +L R+L GE++ +IA I + R++AP TT + Sbjct: 124 ELDMRMDQRQALTAKTIVNEWPFNELMRVLSRYGEDRFPKQIARKIEQHRENAPINTTFE 183 Query: 191 LSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I++ + ++ HPA RSFQA RI VN+E+ L L A + L G + V++ Sbjct: 184 LVDIIKEAIPAPARRKGGHPAKRSFQAFRIAVNDELGALEDSLTQALELLATDGKISVIT 243 Query: 250 FHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 F SLEDRLVK+ F +S ++ A ++P A ++S+T+K + P+ E++A N R+ Sbjct: 244 FQSLEDRLVKQMFREKSSAPELPAGLPVLPGQFE-ADYESLTRKPISPSTEEMAINHRAE 302 Query: 308 SAKLRAGMR 316 SAKLR G+R Sbjct: 303 SAKLR-GIR 310 >gi|315304096|ref|ZP_07874497.1| S-adenosyl-methyltransferase MraW [Listeria ivanovii FSL F6-596] gi|313627537|gb|EFR96269.1| S-adenosyl-methyltransferase MraW [Listeria ivanovii FSL F6-596] Length = 312 Score = 178 bits (451), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 104/303 (34%), Positives = 172/303 (56%), Gaps = 11/303 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VLL + + +L P + +DAT G G+S ++ A D+D A+ + Sbjct: 4 HETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDNAKI 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + Y ++ + ++ F +++ + ++G VDG+++DLGVSS Q+D +RGFS+ + L Sbjct: 64 KLAAYSDKVTFVKSNFRYMKEALNERGISEVDGILYDLGVSSPQLDERERGFSYHQDAAL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM ++A VVN+ + +DL RI GEEK + +IA I +RR+ P +TT +L Sbjct: 124 DMRMDREQELTAKIVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTGELV 183 Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + ++ HP R+FQA+RI VN+E+ + L A + GG + V++FH Sbjct: 184 DIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLITPGGRISVITFH 243 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+ K F A++ + +IP P F+ T+K +VP++E++ N R+RSA Sbjct: 244 SLEDRITKHLFQEATKGPDLPLGLPVIPDEYKPD-FKLATRKPIVPSEEELEQNNRARSA 302 Query: 310 KLR 312 KLR Sbjct: 303 KLR 305 >gi|149001556|ref|ZP_01826529.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae SP14-BS69] gi|149006085|ref|ZP_01829814.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae SP18-BS74] gi|237649375|ref|ZP_04523627.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae CCRI 1974] gi|237821592|ref|ZP_04597437.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae CCRI 1974M2] gi|147760014|gb|EDK67003.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae SP14-BS69] gi|147762441|gb|EDK69402.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae SP18-BS74] Length = 316 Score = 178 bits (451), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 112/305 (36%), Positives = 176/305 (57%), Gaps = 14/305 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 HV VLL + I +L+ P + +DAT G G+S S ++ A D+D A+ Q+ Sbjct: 7 HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66 Query: 77 TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y E+ + + F LQ + + GV DG+ +DLGVSS Q+D +RGFS++K Sbjct: 67 RLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ + ++A +VVN + +DL RI GE+K + +IA I + R+ P +TT + Sbjct: 127 PLDMRMNQDASLTAYEVVNNYDYRDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186 Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ +I K V +K + HPA + FQA+RI VN+E+ + ++ A L G + V+ Sbjct: 187 LAEII-KLVKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVI 245 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F S +V IP + P + + +++K ++P+ E++ N RS Sbjct: 246 TFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKM-ELVSRKPILPSAEELEANNRSH 304 Query: 308 SAKLR 312 SAKLR Sbjct: 305 SAKLR 309 >gi|319939729|ref|ZP_08014086.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Streptococcus anginosus 1_2_62CV] gi|319811067|gb|EFW07378.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Streptococcus anginosus 1_2_62CV] Length = 316 Score = 178 bits (451), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 114/309 (36%), Positives = 175/309 (56%), Gaps = 14/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQE 76 HV VLL + I L+ P V +DAT G G+S K+G N + A D+D A+ Q+ Sbjct: 7 HVTVLLHETIDQLDIKPNGVYVDATLGGAGHSEYLLSKLGKNGHLYAFDQDQTAIEHAQK 66 Query: 77 TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y EQ + F L+ + + GV DG+ +DLGVSS Q+D +RGFS+++ Sbjct: 67 RLASYVEQGMVTFINDNFRHLKARLNELGVEEIDGICYDLGVSSPQLDERERGFSYKQDA 126 Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ ++A +VVNQ + DL RI GE+K + +IA I + R+ +TT + Sbjct: 127 PLDMRMNREAKLTAYEVVNQYSYHDLVRIFFKYGEDKFSKQIARKIEQMREKKLIETTTE 186 Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ +I K+ +K + HPA + FQA+RI VN+E+ + ++ A L G + V+ Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDLLAVDGRISVI 245 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F S V IP N P + + +T+K ++P++E++ N R+ Sbjct: 246 TFHSLEDRLTKQLFKEASTVDVPKGLPFIPENLQPKM-KLVTRKPILPSKEELDNNNRAH 304 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 305 SAKLRVAQK 313 >gi|257870252|ref|ZP_05649905.1| methyltransferase [Enterococcus gallinarum EG2] gi|257804416|gb|EEV33238.1| methyltransferase [Enterococcus gallinarum EG2] Length = 319 Score = 178 bits (451), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 113/312 (36%), Positives = 176/312 (56%), Gaps = 13/312 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H V+L++ + L P + +D T G G+S S ++ A D+D A+ +E Sbjct: 6 HYTVMLKETVDGLAIRPDGIYVDCTLGGAGHSEYLLSQLSEEGHLYAFDQDQKAIDHAKE 65 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y K + ++ F L++ + +GVD GV++DLGVSS Q+D +RGFS+ + Sbjct: 66 RLAPYVAKGMVTFIKSNFRYLKEALQQQGVDQVSGVLYDLGVSSPQLDEAERGFSYHQDA 125 Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S ++A +VVNQ + L +I GEEK + +IA I + R + P +TT + Sbjct: 126 PLDMRMDQSAALTAYEVVNQFDYHQLVKIFFRYGEEKFSKQIAREIERTRANKPIETTGE 185 Query: 191 LSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I+ + ++ HPA R FQA+RI VN+E+ + + L A L+ G + V++ Sbjct: 186 LVEIIKTAIPAPARRKGGHPAKRIFQAIRIAVNDELGVIEESLEQAIDLLEKNGRISVIT 245 Query: 250 FHSLEDRLVKKFFASRS--GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 FHSLEDR+VK F + S V +IP P V + IT+K ++P++E+V+ N RSR Sbjct: 246 FHSLEDRIVKSTFKAYSTPKDVPPGLPIIPEEFQP-VLKLITRKPLLPSEEEVSENNRSR 304 Query: 308 SAKLRAGMRTVE 319 SAKLR + E Sbjct: 305 SAKLRIAEKMKE 316 >gi|171057205|ref|YP_001789554.1| S-adenosyl-methyltransferase MraW [Leptothrix cholodnii SP-6] gi|263456313|sp|B1XY20|RSMH_LEPCP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|170774650|gb|ACB32789.1| S-adenosyl-methyltransferase MraW [Leptothrix cholodnii SP-6] Length = 325 Score = 178 bits (451), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 123/308 (39%), Positives = 180/308 (58%), Gaps = 15/308 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ- 75 H VLL + + L P V LD T+G GG+SR + +IA+DRDP A++ + Sbjct: 11 HRTVLLHEAVDALVQRPAGVYLDGTYGRGGHSRLILERLDPAGRLIAIDRDPEALANARS 70 Query: 76 -ETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSG 131 ET D +FS+ A F++ + + + GV G++ DLG+SS QID +RGFSF+ G Sbjct: 71 GETRID-DPRFSIHHARFAEFESVLDEAGVGQLDGLLLDLGISSPQIDNPERGFSFRFDG 129 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA-PFQTTQ 189 PLDMRM + G SA++ + A + + ++ GEE+ A +A AIV RR+ P Q T Sbjct: 130 PLDMRMDPTRGQSAAEFLASAPFERIKEVVRDYGEERFADAVAKAIVARREEGRPVQRTA 189 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 +L++L+ V + + PATR+FQALRI VN E+EE+ QGL A L GG L V++ Sbjct: 190 ELAALVAGAVKTRERGQ-DPATRTFQALRILVNAELEEVEQGLNRALARLAPGGRLAVIA 248 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDR+VK F A R + + R M + P + +++ + + P + +VA N R+RSA Sbjct: 249 FHSLEDRIVKTFIA-RHAREVYDRRMPYATPAPLLMRAVAR--IKPGEAEVAANPRARSA 305 Query: 310 KLRAGMRT 317 LR RT Sbjct: 306 ILRVAERT 313 >gi|325269666|ref|ZP_08136279.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Prevotella multiformis DSM 16608] gi|324988034|gb|EGC20004.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Prevotella multiformis DSM 16608] Length = 314 Score = 178 bits (451), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 118/305 (38%), Positives = 170/305 (55%), Gaps = 19/305 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HVPVLL++ I LN G + +D TFG GG+SR GS++ + D+D Q Sbjct: 9 HVPVLLDESIEGLNLHRGGIYVDVTFGGGGHSREILSRLDGGSHLYSFDQD---ADAEQN 65 Query: 77 TMR-----DYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQ 128 T R + +F+ ++ F L++++ GVD G++ DLGVSS D RGFSF+ Sbjct: 66 TGRMGLSGEQVSRFTFVRSNFRYLKNWMRYYGVDKIDGLLADLGVSSHHFDDETRGFSFR 125 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 PLDMRM+ +G +A+D++N+ + L I + GE KQ+ RIA AIVK R PF+T Sbjct: 126 FEAPLDMRMNKRAGQTAADILNEYDEGRLADIFYLYGELKQSRRIAAAIVKARGQQPFKT 185 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T DL L +F + R FQALRI VN+E++ L + L +A + LK GG L V Sbjct: 186 THDL--LAAAEPFFPRAREKKDLARMFQALRIEVNHEMDALREMLLAATELLKPGGRLSV 243 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +++HSLEDR+VK S + + + P F+ + KV+ T ++ N RSR Sbjct: 244 ITYHSLEDRMVKNIMKSGNIEGKVKQDFFGRIETP--FRLVNNKVITATDDEQERNPRSR 301 Query: 308 SAKLR 312 SAKLR Sbjct: 302 SAKLR 306 >gi|313123436|ref|YP_004033695.1| s-adenosyl-l-methionine-dependent methyltransferase mraw [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312279999|gb|ADQ60718.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 314 Score = 177 bits (450), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 112/307 (36%), Positives = 172/307 (56%), Gaps = 16/307 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77 H VLL + I L P G +DATFG GG++R N+I D+D +A+ Q Sbjct: 5 HTSVLLHETIDNLAPQSGGTYVDATFGGGGHARYLLSKLDKGNLIGFDQDQYAIDTAQSN 64 Query: 78 M-----RDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 D + + L FS L++ + G+DG+ +DLGVSS Q+D +RGFS++ Sbjct: 65 FAAFLKEDSQPRLQLVHNNFSHLKEELAKLGISGIDGIYYDLGVSSPQLDQAERGFSYRF 124 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM S A +VNQ + K L +L G+EK + +IA IV+RR+ P +TT Sbjct: 125 DARLDMRMDQSQDFDAYQLVNQYDQKQLADVLYRYGDEKFSRQIARKIVERRRVKPIETT 184 Query: 189 QDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L +I++ + ++ + HPA +SFQA+R+ VN+E++ L L A L GG + V Sbjct: 185 FELVEIIKEAIPAAARRSGGHPAKKSFQAIRVEVNHELDVLRASLEEAISLLNPGGRISV 244 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 ++F SLED++VK+ F S +V R M +P P + + + +K + ++E++A N R Sbjct: 245 ITFQSLEDKIVKQTFKKYS-EVEIPRGMPVVPEGIKPTL-RLVNRKPITASEEELAENNR 302 Query: 306 SRSAKLR 312 S SAKLR Sbjct: 303 SHSAKLR 309 >gi|115372771|ref|ZP_01460077.1| S-adenosyl-methyltransferase MraW [Stigmatella aurantiaca DW4/3-1] gi|115370252|gb|EAU69181.1| S-adenosyl-methyltransferase MraW [Stigmatella aurantiaca DW4/3-1] Length = 278 Score = 177 bits (450), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 106/280 (37%), Positives = 159/280 (56%), Gaps = 12/280 (4%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL--- 95 +ILD T G GG++ + G+ VI +DRDP A++ + + F F +L Sbjct: 1 MILDGTLGGGGHTEALLARGATVIGVDRDPVALAAATARLGGHA-HFQARAGNFGELPRV 59 Query: 96 -QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVK 154 D +P VDGV+ DLGVSS Q+D +RGFSF GPLDMRM G +A++++ Q + + Sbjct: 60 AADVLP---VDGVLVDLGVSSPQLDVAERGFSFNHDGPLDMRMGPEGRTAAELIAQEDER 116 Query: 155 DLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSF 214 +L RI+ LGEE + IA + +++ P +T + ++ + + RIH AT++F Sbjct: 117 ELARIIYELGEESFSRPIAREL---KRALPTRTLEAAEAVKRAVPRKAWPKRIHVATKTF 173 Query: 215 QALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH 274 QALR+ VN E+E L L + + LK GG V++FHSLEDR VK+ F + G Sbjct: 174 QALRMAVNGELEALDALLGALPRLLKVGGRAAVIAFHSLEDRKVKEAFRNLVGACRCPPG 233 Query: 275 M-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 + + + P F +TKK V ++++V N RSRSA LRA Sbjct: 234 LPVCACGGPGDFAPLTKKAVSASEQEVELNPRSRSAHLRA 273 >gi|306821091|ref|ZP_07454707.1| S-adenosyl-methyltransferase MraW [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550784|gb|EFM38759.1| S-adenosyl-methyltransferase MraW [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 309 Score = 177 bits (450), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 114/304 (37%), Positives = 163/304 (53%), Gaps = 13/304 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76 +H VLL + + LN G +DATFG GG+S +N+ D+D A+ G Sbjct: 4 NHKSVLLYETVDSLNVKEGNTYVDATFGGGGHSGYLLSKANNINLYVFDQDEEAIKNGMN 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 F ++ + ++ + DG++ DLGVSS Q+D +RGFS+ PL Sbjct: 64 NFAG-NNNIHFINTNFVNIKSALYERKITKIDGLIADLGVSSYQLDNAERGFSYMNDAPL 122 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S ++A DVVN + + L+ I+ GEE A +IA IV RR TT +L Sbjct: 123 DMRMDKNSPLTAYDVVNNYSKEQLSDIIRRYGEENWADKIAQVIVDRRGQKSIDTTFELV 182 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+K + ++ HPA R+FQA+RI VNNEI+ L + L A + L +GG L V++FH Sbjct: 183 DVIEKAIPKKLRDKNKHPAKRTFQAIRIEVNNEIKILEKFLCDAFELLSSGGRLSVITFH 242 Query: 252 SLEDRLVKKFFASRSGKVMAVRHM---IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SLEDR VK F G + + + + A ITKK +VP+ E++ N RSRS Sbjct: 243 SLEDRAVKNIFKELVGGCICPKEFPICMCNRKEEATI--ITKKPIVPSDEELKNNPRSRS 300 Query: 309 AKLR 312 AKLR Sbjct: 301 AKLR 304 >gi|332203501|gb|EGJ17568.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae GA47368] Length = 316 Score = 177 bits (450), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 112/309 (36%), Positives = 176/309 (56%), Gaps = 14/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 HV VLL + I +L+ P + +DAT G G+S S ++ A D+D A+ QE Sbjct: 7 HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQE 66 Query: 77 TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y E+ + + F LQ + + GV DG+ +DLGVSS Q+D +RGFS++K Sbjct: 67 RLALYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ + ++A +VVN + DL RI GE+K + +IA I + R+ P +TT + Sbjct: 127 PLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186 Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ +I K+ +K + HPA + FQA+RI VN+E+ + ++ A L G + V+ Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVI 245 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F S +V IP + P + + +++K ++P+ E++ N RS Sbjct: 246 TFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKM-ELVSRKPILPSAEELEANNRSH 304 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 305 SAKLRVARK 313 >gi|282880611|ref|ZP_06289317.1| S-adenosyl-methyltransferase MraW [Prevotella timonensis CRIS 5C-B1] gi|281305506|gb|EFA97560.1| S-adenosyl-methyltransferase MraW [Prevotella timonensis CRIS 5C-B1] Length = 312 Score = 177 bits (450), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 113/302 (37%), Positives = 166/302 (54%), Gaps = 13/302 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76 HVPVLLE+ I LN P + +DATFG GG+S S ++ + D+D A Q+ Sbjct: 10 HVPVLLEQSIEGLNIHPEGIYVDATFGGGGHSMEILSHLNEKGHLFSFDQDLDAEKNIQQ 69 Query: 77 TMRD--YKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + ++ F+ ++ F L++ Y + +DG++ DLGVSS D +RGFSF+ Sbjct: 70 EGHEVLLQDNFTFIRSNFRYLKNWMRYYKIEKIDGILADLGVSSHHFDDENRGFSFRFDA 129 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ + ++A+DV+N N + L I + GE K A RIA +VK R +T D Sbjct: 130 PLDMRMNTKASLTAADVINTYNEEQLADIFYLYGELKNARRIASLLVKARSQKNITSTHD 189 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L ++ F K + FQALRI VN+E+E L + L SA++ L GG L+V+++ Sbjct: 190 LIQAVEAV--FGKVREKKDLAKLFQALRIEVNHEMEALKELLNSAQELLTTGGRLVVITY 247 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDR+VK ++G V F+ + KV+ PT ++ N RSRSAK Sbjct: 248 HSLEDRMVKNIM--KTGNVQGKVQQDFFGRIETTFKLLNNKVITPTPQEQQENPRSRSAK 305 Query: 311 LR 312 LR Sbjct: 306 LR 307 >gi|169794472|ref|YP_001712265.1| S-adenosylmethionine methyltransferase [Acinetobacter baumannii AYE] gi|184159721|ref|YP_001848060.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii ACICU] gi|215482062|ref|YP_002324244.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii AB307-0294] gi|239501976|ref|ZP_04661286.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii AB900] gi|260556905|ref|ZP_05829122.1| MraW methylase [Acinetobacter baumannii ATCC 19606] gi|332851366|ref|ZP_08433418.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii 6013150] gi|332868777|ref|ZP_08438400.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii 6013113] gi|332873764|ref|ZP_08441706.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii 6014059] gi|263433333|sp|B7GVN1|RSMH_ACIB3 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263433342|sp|B2I0K7|RSMH_ACIBC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263433359|sp|B0V8N7|RSMH_ACIBY RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263437330|sp|A3M9K5|RSMH_ACIBT RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|169147399|emb|CAM85260.1| S-adenosylmethionine methyltransferase [Acinetobacter baumannii AYE] gi|183211315|gb|ACC58713.1| predicted S-adenosylmethionine-dependent methyltransferase [Acinetobacter baumannii ACICU] gi|193078572|gb|ABO13599.2| S-adenosylmethionine methyltransferase [Acinetobacter baumannii ATCC 17978] gi|213987451|gb|ACJ57750.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii AB307-0294] gi|260409511|gb|EEX02812.1| MraW methylase [Acinetobacter baumannii ATCC 19606] gi|322509634|gb|ADX05088.1| S-adenosylmethionine methyltransferase [Acinetobacter baumannii 1656-2] gi|323519652|gb|ADX94033.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii TCDC-AB0715] gi|332730082|gb|EGJ61410.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii 6013150] gi|332733206|gb|EGJ64403.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii 6013113] gi|332737987|gb|EGJ68872.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii 6014059] Length = 307 Score = 177 bits (450), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 122/311 (39%), Positives = 175/311 (56%), Gaps = 26/311 (8%) Query: 20 HVPVLL-EKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDP----FAV 71 H+ VLL E V +LL V +DATFG GG++R K+ N V A D+DP A Sbjct: 3 HISVLLFETVESLLADRTTGVYIDATFGRGGHTRLLLSKLDENARVYAFDKDPQALEVAA 62 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQ 128 + QE R F++ A+F+ +++ + + GV DG++ DLGVSS Q+D +RGFSF Sbjct: 63 ALAQEDPR-----FTIIHASFADIKEKMQEIGVQSVDGIMADLGVSSPQLDQAERGFSFM 117 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM S G++A++ + + +DL I+ GEE+ + RIA AI +Q+ T Sbjct: 118 QDGPLDMRMDNSKGLTAAEWLLEVEEEDLANIIYQYGEERYSRRIARAI---KQAGKLDT 174 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T L+ ++ KT + HPATR+FQA+RI +N E++++ L A LK G L V Sbjct: 175 TAQLAEIV-KTAHPKWEKHKHPATRTFQAIRIAINKELDDIEVFLPQAVDLLKPKGRLSV 233 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV--VVPTQEDVAFNRR 305 +SFHSLEDRL+K+F S +P V KK+ V ++E+V N R Sbjct: 234 ISFHSLEDRLIKQFIQKESTLAEDSGWGMPQQ---QVDTRRLKKISRVRASEEEVKANPR 290 Query: 306 SRSAKLRAGMR 316 SRSA LR R Sbjct: 291 SRSAWLRVAER 301 >gi|116618594|ref|YP_818965.1| SAM-dependent methyltransferase for cell envelope biogenesis [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|122271206|sp|Q03W30|RSMH_LEUMM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|116097441|gb|ABJ62592.1| SAM-dependent methyltransferase for cell envelope biogenesis [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 312 Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 113/309 (36%), Positives = 172/309 (55%), Gaps = 13/309 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76 +HV VLL + IALL+ P +DAT G GG++ K + + D+D A+ E Sbjct: 4 EHVTVLLHEAIALLDIKPEGTYVDATLGGGGHTGEILKQLTTGTLYSFDQDDTAIQYNAE 63 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 D + + F L + D GV DG+V+DLGVSS+Q D G RGFS++ Sbjct: 64 QYADEIAAGKLVIIHKNFRTLTSALADYGVTAVDGIVYDLGVSSVQFDDGQRGFSYKYDA 123 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM ++A +VN+ +L R+L GE++ +IA I + R++AP TT + Sbjct: 124 ELDMRMDQRQALTAKTIVNEWPFNELMRVLSRYGEDRFPKQIARKIEQHRENAPINTTFE 183 Query: 191 LSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I++ + ++ HPA RSFQA RI VN+E+ L L A + L G + V++ Sbjct: 184 LVDIIKEAIPAPARRKGGHPAKRSFQAFRIAVNDELGALEDSLTQALELLATDGKISVIT 243 Query: 250 FHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 F SLEDRLVK+ F +S ++ A ++P A ++ +T+K + P+ E++A N R+ Sbjct: 244 FQSLEDRLVKQMFREKSSAPELPAGLPVLPGQFE-ADYELLTRKPISPSTEEMAINHRAE 302 Query: 308 SAKLRAGMR 316 SAKLR G+R Sbjct: 303 SAKLR-GIR 310 >gi|315038044|ref|YP_004031612.1| S-adenosyl-methyltransferase MraW [Lactobacillus amylovorus GRL 1112] gi|312276177|gb|ADQ58817.1| S-adenosyl-methyltransferase MraW [Lactobacillus amylovorus GRL 1112] gi|327183324|gb|AEA31771.1| 16S rRNA m(4)C1402 methyltranserfase [Lactobacillus amylovorus GRL 1118] Length = 315 Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 114/312 (36%), Positives = 172/312 (55%), Gaps = 17/312 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77 H VLL + I L P G + +DATFG GG++R +I D+D +A+ + Sbjct: 5 HTSVLLHETIDNLKPKNGGLYVDATFGGGGHARYLLSKIDTGTLIGFDQDEYAIKSAKLN 64 Query: 78 MRDYKE-----QFSLFQATFSQLQ-DYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 D E + L F+ LQ D V G+DG+ +DLGVSS Q D DRGFS++ Sbjct: 65 FADLLEPDSEPKLKLVHDNFTNLQRDLVELGYSDGIDGIYYDLGVSSPQFDQADRGFSYR 124 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + LDMRM S + A +VN + K+L IL G+EK + +IA IV+RR+ P T Sbjct: 125 YNARLDMRMDQSQSLDAYQLVNTLSQKELADILYKYGDEKFSRQIARKIVERRKDKPIVT 184 Query: 188 TQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T +L +I++ + +++ HPA +SFQALR+ VN+E++ L L A K L+ GG + Sbjct: 185 TFELVDIIKEAIPAYARRTGGHPAKKSFQALRVAVNHELDVLQASLEEAIKVLRPGGRIS 244 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 V++F S ED++VKK F S +V R M +P + P + + + +K + + ++ N Sbjct: 245 VITFQSHEDKIVKKIFKKYS-EVEVPRGMPFVPDDMKPTL-RLVNRKPITASTSELEKNN 302 Query: 305 RSRSAKLRAGMR 316 RS SAKLR + Sbjct: 303 RSHSAKLRVAEK 314 >gi|168700539|ref|ZP_02732816.1| S-adenosyl-methyltransferase MraW [Gemmata obscuriglobus UQM 2246] Length = 341 Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 115/316 (36%), Positives = 163/316 (51%), Gaps = 31/316 (9%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCG 74 G H+PVLL +V+A L+P PG+ ++D T G G+S + + +IA D D + Sbjct: 29 GAHIPVLLAEVLAALDPRPGQTVVDCTLGFAGHSLELLRRVAPDGLLIATDLDVGNIEPA 88 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + + F L F+ L + +GV D V+ DLG+SSMQ+D DRGFSF + G Sbjct: 89 RPKLEEAGGLFGLHHTNFAGLPTVLAIEGVTAVDAVLADLGMSSMQVDDRDRGFSFMRDG 148 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM G +A+ ++ + +L LG+E QA IA A+V+ RQ+AP + T+ Sbjct: 149 PLDMRMDRTRGRTAAQLLATLSRDELAACFSELGDEPQAGAIADAVVRERQTAPVERTKQ 208 Query: 191 LSSLIQKTVYF----------SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 L +LI+ + + P TR FQALRI N E+ L Q LR LK Sbjct: 209 LRALIEAAAPVRIDRAPGAPPERKQLLAPVTRVFQALRILTNRELASLQQLLRVLPTVLK 268 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300 GG+ ++SFHS EDRLVK F R G V+ S++ + T E+ Sbjct: 269 PGGVAAIISFHSGEDRLVKAAF--RDG------------LRAGVYSSVSPDAIRSTFEER 314 Query: 301 AFNRRSRSAKLRAGMR 316 N R+RSAKLR R Sbjct: 315 RANPRARSAKLRVARR 330 >gi|241888447|ref|ZP_04775758.1| S-adenosyl-methyltransferase MraW [Gemella haemolysans ATCC 10379] gi|241864889|gb|EER69260.1| S-adenosyl-methyltransferase MraW [Gemella haemolysans ATCC 10379] Length = 311 Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 109/304 (35%), Positives = 168/304 (55%), Gaps = 10/304 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H VLL + + L+ + +D T G G+S K N + A D+D A+ +E Sbjct: 4 HYSVLLNEAVEGLDIKEDGIYVDCTLGGAGHSLEILKRLKNGKLYAFDQDNVALENAKEK 63 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + +Y ++ ++ F L++ + + GV DGV++DLGVSS Q+D +RGFS+ LD Sbjct: 64 LAEYSDKVVFIKSNFVNLKEKLAEHGVNEVDGVLYDLGVSSPQLDTPERGFSYNYDTRLD 123 Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM ISA +VVN+ + DL +I GEE + +IA I K+R+ P +TT +L Sbjct: 124 MRMDTDAKISAYEVVNEYSYHDLVKIFYRYGEENFSKQIARNIEKKREQKPIETTFELVE 183 Query: 194 LIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I++++ +K HPA R FQA+RI VNNE+ L A + GG + V++FHS Sbjct: 184 IIKESIPAAKRRTGGHPAKRVFQAIRIAVNNELSVFEDSLEQAIDIVSVGGRISVITFHS 243 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRSAK 310 LEDR+ K+ F S S K + +P ++ + IT+K + P+ ++ N RSRSAK Sbjct: 244 LEDRICKQIFNSYS-KSKDIPKNLPIMPEESLSKLKVITRKPIYPSDIELEENNRSRSAK 302 Query: 311 LRAG 314 LR Sbjct: 303 LRVA 306 >gi|111221622|ref|YP_712416.1| S-adenosyl-methyltransferase MraW [Frankia alni ACN14a] gi|123143317|sp|Q0RNP9|RSMH_FRAAA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|111149154|emb|CAJ60837.1| S-adenosyl-dependent methyl transferase [Frankia alni ACN14a] Length = 325 Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 119/312 (38%), Positives = 185/312 (59%), Gaps = 17/312 (5%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRS----FCKMGSNVIALDRDPFAVS 72 H PVL ++V+ LL PA PG V++DAT G GG++ + F ++ V+ LDRD A++ Sbjct: 2 HTPVLTDRVLELLAPALSRPGAVVVDATVGLGGHAAALLAAFPEV--RVVGLDRDLDALA 59 Query: 73 CGQETMRDY-KEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQ 128 E +R E+ L A + ++ + G V GV+FDLGVSS+Q+D RGF++ Sbjct: 60 HSGERLRALAPERVRLVHAVYDEIGTVLAGLGSARVQGVLFDLGVSSLQLDTDARGFAYS 119 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + PLDMRM + G++A++V+N + L RIL GEE+ A RIA ++V+ R PF T Sbjct: 120 RDAPLDMRMDATRGLTAAEVLNTYDAAALARILRDYGEERFARRIAESVVRARAVEPFTT 179 Query: 188 TQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 + L L++ + ++ +PA R+FQALRI VN+E++ LA+ L +A AL GG L+ Sbjct: 180 SARLVDLVRDAIPAPARRTGGNPAKRTFQALRIEVNSELDVLARALPAAFDALAVGGRLV 239 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V+S+HSLEDRLVK+ + ++ ++P+ A P + +T+ + + A N R Sbjct: 240 VLSYHSLEDRLVKRELRGYAETLVPPDMPVVPAGAEPR-LRWLTRGAEPAGEVEKADNPR 298 Query: 306 SRSAKLRAGMRT 317 + S +LRA RT Sbjct: 299 AASVRLRAAERT 310 >gi|15895401|ref|NP_348750.1| S-adenosyl-methyltransferase MraW [Clostridium acetobutylicum ATCC 824] gi|20139082|sp|Q97H81|RSMH_CLOAB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|15025123|gb|AAK80090.1|AE007714_3 Predicted S-adenosylmethionine-dependent methyltransferase, involved in cell envelope biogenesis YLXA B.subtilis ortholog [Clostridium acetobutylicum ATCC 824] gi|325509547|gb|ADZ21183.1| S-adenosyl-methyltransferase MraW [Clostridium acetobutylicum EA 2018] Length = 312 Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 112/309 (36%), Positives = 171/309 (55%), Gaps = 14/309 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 +HVPVLLE+ I LN + +D T G G+S K S+ +I +D+D A+ Sbjct: 4 NHVPVLLEETIENLNIKEDGIYVDCTLGGAGHSSEILKRLSSKGRLIGIDQDKDALKAAS 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E +++YK + FS +++ + + VDG++ DLGVSS Q+D +RGFS+ P Sbjct: 64 ERLKEYK-NLTFVHDNFSNIKNILEELKIDKVDGILADLGVSSYQLDEPERGFSYMNDAP 122 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ S SA DV+N + + L I+ GEEK A RIA IV++R TT +L Sbjct: 123 LDMRMNRDSEFSAYDVINGYDEEKLYSIIKNYGEEKFAKRIAKFIVEKRSEEAINTTFEL 182 Query: 192 SSLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 +I+ + F + HPA R+FQA+RI VN E+E L + + + LK+ G + +++ Sbjct: 183 VDIIKAAIPAKFRRQGP-HPAKRTFQAIRIEVNQELEILNKTIEDSVDKLKSEGRICIIT 241 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 FHSLEDR+VK + M + M P + + IT+K + + ++ +N RSR Sbjct: 242 FHSLEDRIVKNKYRELQDPCMCPKDIPMCVCGKKPKI-KIITRKPIEASSYELEYNPRSR 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRVAEK 309 >gi|251783120|ref|YP_002997423.1| S-adenosyl-methyltransferase MraW [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391750|dbj|BAH82209.1| S-adenosyl-methyltransferase mraW [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 337 Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 113/323 (34%), Positives = 176/323 (54%), Gaps = 17/323 (5%) Query: 5 SCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NV 61 + K M+ HH V VLL + + +L+ P + +DAT G G+S S ++ Sbjct: 18 TIKVMTKEFHH-----VTVLLHETVDMLDIKPNGIYVDATLGGSGHSAYLLSKLSEQGHL 72 Query: 62 IALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSM 116 D+D A+ Q T++ Y K Q + + F L+ + GVD G+++DLGVSS Sbjct: 73 YCFDQDQKAIDNAQVTLKSYIDKGQVTFIKDNFRHLKARLTALGVDEIDGILYDLGVSSP 132 Query: 117 QIDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175 Q+D +RGFS+ + PLDMRM ++A DVVN DL +I GE+K + +IA Sbjct: 133 QLDERERGFSYNQDAPLDMRMDRQAPLTAYDVVNTYPFNDLVKIFFKYGEDKFSKQIARK 192 Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRS 234 I + R P +TT +L+ LI+ + + HPA + FQA+RI VN+E+ + ++ Sbjct: 193 IEQARAIKPIETTTELAELIKAAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQD 252 Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVV 293 A + L G + V++FHSLEDRL K+ F S V IP + P F+ +++K + Sbjct: 253 AMELLALDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPEDMKP-TFELVSRKPI 311 Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316 +P+QE++A N R+ SAKLR + Sbjct: 312 LPSQEELAANNRAHSAKLRVAKK 334 >gi|209519087|ref|ZP_03267893.1| S-adenosyl-methyltransferase MraW [Burkholderia sp. H160] gi|209500459|gb|EEA00509.1| S-adenosyl-methyltransferase MraW [Burkholderia sp. H160] Length = 317 Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 122/321 (38%), Positives = 185/321 (57%), Gaps = 20/321 (6%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGS--NVIALD 65 M+ A+ + + +L E V AL+ G + D TFG GG+SR ++G +IA D Sbjct: 1 MAPAMGNELQHRTVLLNEAVDALVTRTDGTYV-DGTFGRGGHSRLVLERLGEAGRLIAFD 59 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGD 122 +DP A++ Q+ +F++ +F+ L+ + ++GV GV+ DLGVSS Q+D + Sbjct: 60 KDPLAIATAQKIA---DSRFAIVHESFASLRAAMAERGVGRVSGVLLDLGVSSPQVDDPE 116 Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF+ GPLDMRM + G SA+D + +A V++LT ++ GEE+ A +IA A+V RR Sbjct: 117 RGFSFRADGPLDMRMDPTRGESAADWLARATVQELTEVIRDYGEERFAFQIAKALVARRA 176 Query: 182 SA----PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 + P +T +L+ ++ V + + PATR+FQA+RI VN E+ EL L +A Sbjct: 177 ESDRLGPLVSTGELAQIVANVVKTREKGK-DPATRTFQAIRIHVNQELAELQVVLEAALS 235 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA--HPAVFQSITKKVVVP 295 L+ GG L+V+SFHSLEDR+VK+F + + AV +P A P+ I +V Sbjct: 236 LLEQGGRLVVISFHSLEDRIVKRFMQAHA-STPAVDRRLPIRAVDLPSPPLKIIGRVFAS 294 Query: 296 TQEDVAFNRRSRSAKLRAGMR 316 E VA N R+RSA +R R Sbjct: 295 DAE-VADNPRARSAVMRVAER 314 >gi|160946332|ref|ZP_02093541.1| hypothetical protein PEPMIC_00292 [Parvimonas micra ATCC 33270] gi|158447448|gb|EDP24443.1| hypothetical protein PEPMIC_00292 [Parvimonas micra ATCC 33270] Length = 310 Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 111/305 (36%), Positives = 169/305 (55%), Gaps = 14/305 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76 +H+P++L +VI L+ P + +D T G G+S K N +I +D+D A+S ++ Sbjct: 4 NHIPIMLNEVIDNLDIKPNGIYVDLTVGGAGHSTEILKRIKNGKLICVDQDEEALSVARD 63 Query: 77 TMRDYKEQFSLFQATFS---QLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + +++ F ++ DY VDGV+ D+GVSS QID G RGFS+ PL Sbjct: 64 RLLKISDNVLFYKSNFENFKEILDYFGIDKVDGVLLDIGVSSYQIDNGQRGFSYMIDAPL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM SA DVVN N +DL I GEEK RI IV R+ +TT +L Sbjct: 124 DMRMDRDLKKSAFDVVNYYNSEDLEYIFYNYGEEKWTKRIVEFIVNYRKEKLIETTFELV 183 Query: 193 SLIQKTVYFSKNNRI---HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 +I++ + K R HPA R FQA+RI VN E+E + + + + L G L +++ Sbjct: 184 DIIERAI--PKAVRAKGGHPAKRVFQAIRIEVNRELEVIKKVIPDIVERLNKNGRLCIIT 241 Query: 250 FHSLEDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 FHSLEDR+VK F + + + ++ N P + + +TKK +VP++E++ N RS+ Sbjct: 242 FHSLEDRIVKDSFKELARGCICPKELYVCVCNNKPKI-KILTKKPLVPSEEEMNRNPRSK 300 Query: 308 SAKLR 312 S+KLR Sbjct: 301 SSKLR 305 >gi|253997377|ref|YP_003049441.1| S-adenosyl-methyltransferase MraW [Methylotenera mobilis JLW8] gi|253984056|gb|ACT48914.1| S-adenosyl-methyltransferase MraW [Methylotenera mobilis JLW8] Length = 360 Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 121/322 (37%), Positives = 177/322 (54%), Gaps = 27/322 (8%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGS--NVIALDR 66 SSA+H H+ VLL + + L+ P + +D TFG GG+SR ++G +IA DR Sbjct: 49 SSAVHA----HITVLLNEAVRALDIKPNGIYVDGTFGRGGHSRKILAQLGDAGRLIAFDR 104 Query: 67 DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDR 123 D A+ G+ + D + F+L + F+ ++ + + GV DG++ DLG+SS QID +R Sbjct: 105 DLAAIEAGK-AIDDPR--FTLVHSHFADMRKRLAELGVQHVDGILLDLGISSPQIDEAER 161 Query: 124 GFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GFSF+ PLDMRM SG +A+D + + + L ++ GEE+ A IA AI+ R Sbjct: 162 GFSFRYDAPLDMRMDQSSGETAADFLGRTTEQQLAEVIKNYGEERFAKSIARAIIAERND 221 Query: 183 A-PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 TT L+ ++ V + + +PATR+FQALRIFVN E+EEL+ + + L Sbjct: 222 GRAITTTGQLAQIVAGAVTRFEPGQ-NPATRTFQALRIFVNQELEELSLTMPQCLELLAP 280 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSN------AHPAVFQSITKKVVVP 295 G L ++SFHSLEDR+VK+F + R +P+N P K V P Sbjct: 281 HGRLAIISFHSLEDRMVKQFIRGQED-----RDDLPANFPVRAADLPQPRLKSVGKAVKP 335 Query: 296 TQEDVAFNRRSRSAKLRAGMRT 317 + E+V N RSRSA LR RT Sbjct: 336 SDEEVRSNPRSRSAVLRVAERT 357 >gi|331701055|ref|YP_004398014.1| ribosomal RNA small subunit methyltransferase H [Lactobacillus buchneri NRRL B-30929] gi|329128398|gb|AEB72951.1| Ribosomal RNA small subunit methyltransferase H [Lactobacillus buchneri NRRL B-30929] Length = 315 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 112/304 (36%), Positives = 167/304 (54%), Gaps = 12/304 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 HV VLL + + LN P +DAT G GG++ + +N + + D+D A++ ++ Sbjct: 6 HVTVLLNEAVKGLNINPDGTYVDATLGGGGHTTKILEQLTNGHLYSFDQDEEAIAYNRQH 65 Query: 78 MRDYKE--QFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +Y E + +L F L+ + + G+DG+V+DLGVSS Q D RGFS++ Sbjct: 66 LAEYIEAGKLTLIHDNFRHLKSALQNVDVSGIDGIVYDLGVSSPQFDEAGRGFSYRFDAR 125 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM I A +VN+ + L RI GEEK A IA I R+ P TT DL Sbjct: 126 LDMRMDQDNPIDAWKIVNEWPYEKLVRIFYRYGEEKFAKSIARRIETVRREHPIDTTNDL 185 Query: 192 SSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I++ + ++ + HPA + FQA+RI VN+E+ L L A L G + V++F Sbjct: 186 VEVIKEGIPAAARRHGGHPAKKVFQAVRIAVNDELSALEDSLEQALDLLNVNGRISVITF 245 Query: 251 HSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SLEDRLVK F ++ ++ +IP P F+SIT+K +VPT+ ++ N RS S Sbjct: 246 QSLEDRLVKTMFKEKTSLPELPPNLPIIPEGIKPK-FKSITRKPIVPTEAELEENHRSHS 304 Query: 309 AKLR 312 AKLR Sbjct: 305 AKLR 308 >gi|149018026|ref|ZP_01834485.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae SP23-BS72] gi|147931590|gb|EDK82568.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae SP23-BS72] Length = 316 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 112/309 (36%), Positives = 176/309 (56%), Gaps = 14/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 HV VLL + I +L+ P + +DAT G G+S S ++ A D+D A+ Q+ Sbjct: 7 HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66 Query: 77 TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y E+ + + F LQ + + GV DG+ +DLGVSS Q+D +RGFS++K Sbjct: 67 RLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ + ++A +VVN + DL RI GE+K + +IA I + R+ P +TT + Sbjct: 127 PLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186 Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ +I K V +K + HPA + FQA+RI VN+E+ + ++ A L G + V+ Sbjct: 187 LAEII-KLVKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVI 245 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F S +V IP + P + + +++K ++P+ E++ N RS Sbjct: 246 TFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKM-ELVSRKPILPSAEELEANNRSH 304 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 305 SAKLRVARK 313 >gi|332076775|gb|EGI87237.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae GA17545] Length = 316 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 112/309 (36%), Positives = 176/309 (56%), Gaps = 14/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 HV VLL + I +L+ P + +DAT G G+S S ++ A D+D A+ Q+ Sbjct: 7 HVTVLLHETIDMLDVKPEGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66 Query: 77 TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y E+ + + F LQ + + GV DG+ +DLGVSS Q+D +RGFS++K Sbjct: 67 RLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ + ++A +VVN + DL RI GE+K + +IA I + R+ P +TT + Sbjct: 127 PLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186 Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ +I K V +K + HPA + FQA+RI VN+E+ + ++ A L G + V+ Sbjct: 187 LAEII-KLVKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVI 245 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F S +V IP + P + + +++K ++P+ E++ N RS Sbjct: 246 TFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKM-ELVSRKPILPSAEELEANNRSH 304 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 305 SAKLRVARK 313 >gi|302874623|ref|YP_003843256.1| S-adenosyl-methyltransferase MraW [Clostridium cellulovorans 743B] gi|307690766|ref|ZP_07633212.1| S-adenosyl-methyltransferase MraW [Clostridium cellulovorans 743B] gi|302577480|gb|ADL51492.1| S-adenosyl-methyltransferase MraW [Clostridium cellulovorans 743B] Length = 311 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 111/309 (35%), Positives = 171/309 (55%), Gaps = 12/309 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 HV VLLE+ I L+ P + +D T G G+S K ++ +I +D+D A++ +E Sbjct: 5 HVSVLLEECIEGLSIKPDGIYVDCTLGGAGHSFEIVKQLTSEGRLIGIDQDTNAINAAKE 64 Query: 77 TMRDYKEQFSL---FQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++DY + F L++ DK VDG++ DLGVSS Q+D +RGFS+ K PL Sbjct: 65 KLKDYNNVTYVHDNFHNIGEILENLNIDK-VDGILMDLGVSSHQLDVAERGFSYMKDAPL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ SA D+VN + + L +I+ GEEK A RIA IVK R +TT L Sbjct: 124 DMRMNQERDFSAYDIVNTYSEEQLFKIIRDYGEEKFAKRIASFIVKNRNEKTIETTFQLV 183 Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + ++ HPA R+FQA+RI VN E+E L + + L G + +++FH Sbjct: 184 EIIKNAIPAKARREGPHPAKRTFQAIRIEVNKELEILDKAINDGIDKLALDGRICIITFH 243 Query: 252 SLEDRLVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK + ++ + + N P V + I++K + + E++ +N RSRSA Sbjct: 244 SLEDRIVKNIYKEQANPCTCPKEFPICICNRKPKV-KIISRKPIEASAEELEYNPRSRSA 302 Query: 310 KLRAGMRTV 318 KLR + + Sbjct: 303 KLRVAEKIM 311 >gi|322412440|gb|EFY03348.1| S-adenosyl-methyltransferase MraW [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 337 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 112/323 (34%), Positives = 178/323 (55%), Gaps = 17/323 (5%) Query: 5 SCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NV 61 + K M+ HH V VLL + + +L+ P + +DAT G G+S S ++ Sbjct: 18 TIKVMTKEFHH-----VTVLLHETVDMLDIKPNGIYVDATLGGSGHSAYLLSKLSEQGHL 72 Query: 62 IALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSM 116 D+D A+ Q ++ Y K Q + + F L+ + GV DG+++DLGVSS Sbjct: 73 YCFDQDQKAIDNAQLILKPYIDKGQVTFIKDNFRHLKARLEALGVTEIDGILYDLGVSSP 132 Query: 117 QIDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175 Q+D +RGFS++++ PLDMRM ++A DVVN DL +I GE+K + +IA Sbjct: 133 QLDEKERGFSYKQNAPLDMRMDRQAPLTAYDVVNTYPFNDLVKIFFKYGEDKFSKQIARK 192 Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRS 234 I + R P +TT +L+ LI+ + + HPA + FQA+RI VN+E+ + ++ Sbjct: 193 IEQARAIKPIETTTELAELIKAAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQD 252 Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVV 293 A + L G + V++FHSLEDRL K+ F S V IP + P +F+ +++K + Sbjct: 253 AMELLALDGRISVITFHSLEDRLTKQLFKEVSTVDVPKGLPFIPEDMKP-IFELVSRKPI 311 Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316 +P+QE++A N R+ SAKLR + Sbjct: 312 LPSQEELAANNRAHSAKLRVAKK 334 >gi|148983740|ref|ZP_01817059.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae SP3-BS71] gi|149013058|ref|ZP_01833924.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae SP19-BS75] gi|168484209|ref|ZP_02709161.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae CDC1873-00] gi|194398555|ref|YP_002037018.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae G54] gi|225856075|ref|YP_002737586.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae P1031] gi|262825679|sp|C1CIJ8|RSMH_STRZP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262826787|sp|B5E6Z2|RSMH_STRP4 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|4009486|gb|AAC95454.1| YllC [Streptococcus pneumoniae G54] gi|147763093|gb|EDK70035.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae SP19-BS75] gi|147923887|gb|EDK74999.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae SP3-BS71] gi|172042545|gb|EDT50591.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae CDC1873-00] gi|194358222|gb|ACF56670.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae G54] gi|225724871|gb|ACO20723.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae P1031] gi|301799463|emb|CBW32003.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae OXC141] gi|332077620|gb|EGI88081.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae GA41301] gi|332202242|gb|EGJ16311.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae GA41317] Length = 316 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 112/309 (36%), Positives = 176/309 (56%), Gaps = 14/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 HV VLL + I +L+ P + +DAT G G+S S ++ A D+D A+ Q+ Sbjct: 7 HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66 Query: 77 TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y E+ + + F LQ + + GV DG+ +DLGVSS Q+D +RGFS++K Sbjct: 67 RLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ + ++A +VVN + DL RI GE+K + +IA I + R+ P +TT + Sbjct: 127 PLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186 Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ +I K V +K + HPA + FQA+RI VN+E+ + ++ A L G + V+ Sbjct: 187 LAEII-KLVKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVI 245 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F S +V IP + P + + +++K ++P+ E++ N RS Sbjct: 246 TFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKM-ELVSRKPILPSAEELEANNRSH 304 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 305 SAKLRVARK 313 >gi|322377105|ref|ZP_08051597.1| S-adenosyl-methyltransferase MraW [Streptococcus sp. M334] gi|321281818|gb|EFX58826.1| S-adenosyl-methyltransferase MraW [Streptococcus sp. M334] Length = 316 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 111/309 (35%), Positives = 176/309 (56%), Gaps = 14/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 HV VLL + I +L P + +DAT G G+S S ++ A D+D A+ Q+ Sbjct: 7 HVTVLLHETIDMLEVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQQ 66 Query: 77 TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y E+ + + F LQ + + GV DG+ +DLGVSS Q+D +RGFS++K Sbjct: 67 RLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ + ++A +VVN + DL RI GE+K + +IA I + R+ P +TT + Sbjct: 127 PLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186 Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ +I K+ +K + HPA + FQA+RI VN+E+ + ++ A + L G + V+ Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMEMLALDGRISVI 245 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F S +V IP + P + + +++K ++P+ E++ N RS Sbjct: 246 TFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKM-ELVSRKPILPSAEELEANNRSH 304 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 305 SAKLRVARK 313 >gi|309799924|ref|ZP_07694128.1| S-adenosyl-methyltransferase MraW [Streptococcus infantis SK1302] gi|308116451|gb|EFO53923.1| S-adenosyl-methyltransferase MraW [Streptococcus infantis SK1302] Length = 316 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 110/309 (35%), Positives = 178/309 (57%), Gaps = 14/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 HV V+L + I +L+ P + +DAT G G+S S ++ A D+D A+ Q+ Sbjct: 7 HVTVMLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66 Query: 77 TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y E+ + + F LQ + + GV DG+ +DLGVSS Q+D +RGFS++K Sbjct: 67 RLAPYIEKGMVTFIKDNFRHLQLRLQEAGVEEIDGICYDLGVSSPQLDQRERGFSYKKDA 126 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ + ++A +VVN + DL RI GE+K + +IA I + R+ P +TT + Sbjct: 127 PLDMRMNQEASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQARELKPIETTTE 186 Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ +I K+ +K + HPA + FQA+RI VN+E+ + ++ A + L G + V+ Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMELLAVDGRISVI 245 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F S +V IP + P + + +++K ++P++E++ N RS Sbjct: 246 TFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKM-ELVSRKPILPSKEELEANNRSH 304 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 305 SAKLRVARK 313 >gi|293610699|ref|ZP_06692999.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827043|gb|EFF85408.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 307 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 122/311 (39%), Positives = 175/311 (56%), Gaps = 26/311 (8%) Query: 20 HVPVLL-EKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDP----FAV 71 H+ VLL E V +LL V +DATFG GG++R K+ N V A D+DP A Sbjct: 3 HISVLLFETVESLLADRTTGVYIDATFGRGGHTRLLLSKLDENARVYAFDKDPQALEVAA 62 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQ 128 + QE R F++ A+F+ +++ + + GV DG++ DLGVSS Q+D +RGFSF Sbjct: 63 ALAQEDPR-----FTIIHASFADIKEKMQEIGVMSVDGIMADLGVSSPQLDQAERGFSFM 117 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM S G++A++ + + + L I+ GEE+ + RIA AI +Q+ T Sbjct: 118 QDGPLDMRMDNSKGLTAAEWLLEIEEEQLANIIYQYGEERYSRRIAKAI---KQAGKLDT 174 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T L+ L+ KT + HPATR+FQA+RI +N E++++ L A LK G L V Sbjct: 175 TAQLAELV-KTAHPKWEKHKHPATRTFQAIRIAINKELDDIEVFLPQAVDLLKPKGRLSV 233 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV--VVPTQEDVAFNRR 305 +SFHSLEDRL+K+F S + +P V KK+ V ++E+V N R Sbjct: 234 ISFHSLEDRLIKQFIQKESTLAEDIGWGMPQQ---QVDTRRLKKISRVRASEEEVKANPR 290 Query: 306 SRSAKLRAGMR 316 SRSA LR R Sbjct: 291 SRSAWLRVAER 301 >gi|213158956|ref|YP_002320954.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii AB0057] gi|301345409|ref|ZP_07226150.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii AB056] gi|301596009|ref|ZP_07241017.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii AB059] gi|263433709|sp|B7IAX1|RSMH_ACIB5 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|213058116|gb|ACJ43018.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii AB0057] Length = 307 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 122/311 (39%), Positives = 174/311 (55%), Gaps = 26/311 (8%) Query: 20 HVPVLL-EKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDP----FAV 71 H+ VLL E V +LL V +DATFG GG++R K+ N V A D+DP A Sbjct: 3 HISVLLFETVESLLADRTTGVYIDATFGRGGHTRLLLSKLDENARVYAFDKDPQALEVAA 62 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQ 128 + QE R F++ A+F+ +++ + + GV DG++ DLGVSS Q+D +RGFSF Sbjct: 63 ALAQEDPR-----FTIIHASFADIKEKMQEIGVQSVDGIMADLGVSSPQLDQAERGFSFM 117 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM S G++A + + + +DL I+ GEE+ + RIA AI +Q+ T Sbjct: 118 QDGPLDMRMDNSKGLTADEWLLEVEEEDLANIIYQYGEERYSRRIARAI---KQAGKLDT 174 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T L+ ++ KT + HPATR+FQA+RI +N E++++ L A LK G L V Sbjct: 175 TAQLAEIV-KTAHPKWEKHKHPATRTFQAIRIAINKELDDIEVFLPQAVDLLKPKGRLSV 233 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV--VVPTQEDVAFNRR 305 +SFHSLEDRL+K+F S +P V KK+ V ++E+V N R Sbjct: 234 ISFHSLEDRLIKQFIQKESTLAEDSGWGMPQQ---QVDTRRLKKISRVRASEEEVKANPR 290 Query: 306 SRSAKLRAGMR 316 SRSA LR R Sbjct: 291 SRSAWLRVAER 301 >gi|260905297|ref|ZP_05913619.1| S-adenosyl-methyltransferase MraW [Brevibacterium linens BL2] Length = 320 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 109/310 (35%), Positives = 174/310 (56%), Gaps = 19/310 (6%) Query: 20 HVPVLLEKVIALL---------NPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDP 68 HVPVLLE+V+ L+ N P +++D T G GG+S + +V I +DRD Sbjct: 5 HVPVLLERVVELIGVGVQAARDNGHP-PIVVDGTLGMGGHSEAVLTAFPDVHLIGVDRDT 63 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGF 125 A+ + + + ++ + A ++ + + D GVD V+ DLGVSS+Q+D +RGF Sbjct: 64 QAIDIATKRLAPFVDRTDIVHAVDDEIPEILDDLGVDRISAVLLDLGVSSLQLDEDERGF 123 Query: 126 SFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 S+ + PLDMRM ++A++V+ +L RIL GEEK A RIA+ IV R++ P Sbjct: 124 SYSRPAPLDMRMDRTQSLTAAEVLATYPEAELRRILREYGEEKMAGRIANIIVTDRETTP 183 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 ++T+Q L++++ + + +K + HPA R+FQALRI VN+E+ L L A +AL GG+ Sbjct: 184 WETSQQLAAMLSRVLPQTKK-KSHPAKRTFQALRIEVNDELGVLRTALPEALRALHLGGV 242 Query: 245 LIVVSFHSLEDRLVKKFF-ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 ++ S+ SLED +VKK F A S ++P P I + + ++ N Sbjct: 243 AVIESYQSLEDTIVKKIFRAGTSTSAPPDMPVVPEELQPW-LSEIIRGAELADSDEADRN 301 Query: 304 RRSRSAKLRA 313 R++S +LRA Sbjct: 302 PRAKSVRLRA 311 >gi|328906989|gb|EGG26755.1| S-adenosyl-methyltransferase MraW [Propionibacterium sp. P08] Length = 346 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 111/304 (36%), Positives = 169/304 (55%), Gaps = 11/304 (3%) Query: 20 HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCG 74 HVPV+ +++ LL P + +V +D T G GG++ + +V + +DRD A++ Sbjct: 23 HVPVMRARILDLLGPTLESGRRVHVDGTLGMGGHAEAVLTRFPDVQLVGIDRDQQALTMA 82 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++ + ++ L A +L + + D G VD V+ DLG+SS+QID +RGFS+ Sbjct: 83 GARLKPFVDRVHLVHAVHDELPEVLDDLGLGRVDSVLLDLGLSSLQIDEVNRGFSYSVDS 142 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S G +A+ V+N+++ DL RIL GEEK A RI AIV R P +T+ Sbjct: 143 PLDMRMDQSRGRTAAQVLNESDPGDLVRILHEYGEEKFADRIVRAIVTERDRQPIETSGR 202 Query: 191 LSSLIQKTVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L +I + + + ++ HPA R+FQALRI VN E+E L+ L A L GG + V+ Sbjct: 203 LVEIITRAIPVAVRHKRSGHPAKRTFQALRIAVNREMETLSAVLPRALDRLNVGGRIAVL 262 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 ++HSLEDR VK+ F I + A F +T+ P ++++ N RS S Sbjct: 263 AYHSLEDRPVKEVFREACDDTAPAGLPIVPESMAAKFSPVTRGAERPDADEMSANPRSAS 322 Query: 309 AKLR 312 A+LR Sbjct: 323 ARLR 326 >gi|293364229|ref|ZP_06610955.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus oralis ATCC 35037] gi|307702416|ref|ZP_07639372.1| S-adenosyl-methyltransferase MraW [Streptococcus oralis ATCC 35037] gi|291317075|gb|EFE57502.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus oralis ATCC 35037] gi|307623998|gb|EFO02979.1| S-adenosyl-methyltransferase MraW [Streptococcus oralis ATCC 35037] Length = 316 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 111/309 (35%), Positives = 176/309 (56%), Gaps = 14/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 HV VLL + I +L+ P + +DAT G G+S S ++ A D+D A+ Q+ Sbjct: 7 HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66 Query: 77 TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y E+ + + F LQ + + GV DG+ +DLGVSS Q+D +RGFS++K Sbjct: 67 RLAPYIEKGMVTFIKDNFRHLQARLQEAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ + ++A +VVN + DL RI GE+K + +IA I + R+ P +TT + Sbjct: 127 PLDMRMNQEASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186 Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ +I K+ +K + HPA + FQA+RI VN+E+ + ++ A L G + V+ Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVI 245 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F S +V IP + P + + +++K ++P+ E++ N RS Sbjct: 246 TFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKM-ELVSRKPILPSAEELEANNRSH 304 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 305 SAKLRVARK 313 >gi|227550453|ref|ZP_03980502.1| S-adenosyl-methyltransferase [Enterococcus faecium TX1330] gi|257897144|ref|ZP_05676797.1| methyltransferase [Enterococcus faecium Com12] gi|293377368|ref|ZP_06623572.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium PC4.1] gi|227180354|gb|EEI61326.1| S-adenosyl-methyltransferase [Enterococcus faecium TX1330] gi|257833709|gb|EEV60130.1| methyltransferase [Enterococcus faecium Com12] gi|292644060|gb|EFF62166.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium PC4.1] Length = 319 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 114/306 (37%), Positives = 176/306 (57%), Gaps = 16/306 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H V+L++ + LN V +D T G G+S S ++ A D+D A+ + Sbjct: 7 HYTVMLKETVDGLNIKSDGVYVDCTLGGAGHSEYLLSQLSSKGHLYAFDQDQKAIDHAKL 66 Query: 77 TMRDYKEQ--FSLFQATFSQLQD----YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + Y EQ + +A F +L++ YV DK VDG+++DLGVSS Q+D +RGFS+ + Sbjct: 67 RLASYVEQGMVTFIKANFRELEERLSEYV-DK-VDGILYDLGVSSPQLDEAERGFSYHQD 124 Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM S ++A V+N+ + +L +I GEEK + +IA I + R++ P QTT Sbjct: 125 APLDMRMDQSAPLTAYHVINEYSYHELVKIFFRYGEEKFSKQIAREIERVRKTKPIQTTG 184 Query: 190 DLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I++ + ++ HPA R FQA+RI VN+E+ L A + LK G + V+ Sbjct: 185 ELVEIIKQVIPAPARRKGGHPAKRIFQAVRIAVNDELGAEETSLEQAIRLLKVNGRISVI 244 Query: 249 SFHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 +FHSLEDR+VK F S + +IP P + + IT+K ++P++E++A N RS Sbjct: 245 TFHSLEDRIVKSMFKEYSTVQDLPPGLPVIPDEFQPEL-KVITRKPILPSEEELAENNRS 303 Query: 307 RSAKLR 312 RSAKLR Sbjct: 304 RSAKLR 309 >gi|119588675|gb|EAW68269.1| methyltransferase 5 domain containing 1, isoform CRA_d [Homo sapiens] Length = 345 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 112/323 (34%), Positives = 167/323 (51%), Gaps = 76/323 (23%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCGQET 77 H+PV++++V+ L+P G++ LD TFG+GG++++ + S+++ ALDRDP A + + Sbjct: 72 HIPVMVDEVVHCLSPQKGQIFLDMTFGSGGHTKAILQKESDIVLYALDRDPTAYALAEHL 131 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 Y +Q FSQ + + GV DGV+ DLG SSMQ+D +RGFS +K GP Sbjct: 132 SELYPKQIRAMLGQFSQAEALLMKAGVQPGTFDGVLMDLGCSSMQLDTPERGFSLRKDGP 191 Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 LDMRM + + AI R+ Sbjct: 192 LDMRMDGAFPPS------------------------------AIYTRK------------ 209 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 L+Q++ H AT++FQALRIFVNNE+ EL GL++A+K L+ GG L+ +SFHS Sbjct: 210 DLLQRST--------HIATKTFQALRIFVNNELNELYTGLKTAQKFLRPGGRLVALSFHS 261 Query: 253 LEDRLVKKFFASRSGKV---MAVRHMIPSNAH----------------PAVFQSITKKVV 293 LEDR+VK+F S ++VR + + P +++ I KKV+ Sbjct: 262 LEDRIVKRFLLGISMTERFNLSVRQQVMKTSQLGSDHENTEEVSMRRAPLMWELIHKKVL 321 Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316 P +DV N R RSAKLRA ++ Sbjct: 322 SPQDQDVQDNPRGRSAKLRAAIK 344 >gi|314929325|gb|EFS93156.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL044PA1] Length = 337 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 111/304 (36%), Positives = 169/304 (55%), Gaps = 11/304 (3%) Query: 20 HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCG 74 HVPV+ +++ LL P + +V +D T G GG++ + +V + +DRD A++ Sbjct: 14 HVPVMRARILDLLGPTLESGRRVHVDGTLGMGGHAEAVLTRFPDVQLVGIDRDQQALTMA 73 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++ + ++ L A +L + + D G VD V+ DLG+SS+QID +RGFS+ Sbjct: 74 GARLKPFVDRVHLVHAVHDELPEVLDDLGLGRVDSVLLDLGLSSLQIDEVNRGFSYSVDS 133 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S G +A+ V+N+++ DL RIL GEEK A RI AIV R P +T+ Sbjct: 134 PLDMRMDQSRGRTAAQVLNESDPGDLVRILHEYGEEKFADRIVRAIVTERDRQPIETSGR 193 Query: 191 LSSLIQKTVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L +I + + + ++ HPA R+FQALRI VN E+E L+ L A L GG + V+ Sbjct: 194 LVEIITRAIPVAVRHKRSGHPAKRTFQALRIAVNREMETLSAVLPRALDRLNVGGRIAVL 253 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 ++HSLEDR VK+ F I + A F +T+ P ++++ N RS S Sbjct: 254 AYHSLEDRPVKEVFREACDDTAPAGLPIVPESMAAKFSPVTRGAERPDADEMSANPRSAS 313 Query: 309 AKLR 312 A+LR Sbjct: 314 ARLR 317 >gi|315611782|ref|ZP_07886704.1| S-adenosyl-methyltransferase MraW [Streptococcus sanguinis ATCC 49296] gi|315316197|gb|EFU64227.1| S-adenosyl-methyltransferase MraW [Streptococcus sanguinis ATCC 49296] Length = 316 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 111/309 (35%), Positives = 176/309 (56%), Gaps = 14/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 HV VLL + I +L+ P + +DAT G G+S S ++ A D+D A+ Q+ Sbjct: 7 HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66 Query: 77 TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y E+ + + F LQ + + GV DG+ +DLGVSS Q+D +RGFS++K Sbjct: 67 RLAPYIEKGMVTFIKDNFRHLQARLQEAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ + ++A +VVN + DL RI GE+K + +IA I + R+ P +TT + Sbjct: 127 PLDMRMNQEASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTAE 186 Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ +I K+ +K + HPA + FQA+RI VN+E+ + ++ A L G + V+ Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVI 245 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F S +V IP + P + + +++K ++P+ E++ N RS Sbjct: 246 TFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKM-ELVSRKPILPSAEELEANNRSH 304 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 305 SAKLRVARK 313 >gi|194099359|ref|YP_002002459.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae NCCP11945] gi|239999615|ref|ZP_04719539.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae 35/02] gi|240014790|ref|ZP_04721703.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae DGI18] gi|240017238|ref|ZP_04723778.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae FA6140] gi|240081125|ref|ZP_04725668.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae FA19] gi|240113337|ref|ZP_04727827.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae MS11] gi|240121313|ref|ZP_04734275.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae PID24-1] gi|240124146|ref|ZP_04737102.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae PID332] gi|260439867|ref|ZP_05793683.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae DGI2] gi|193934649|gb|ACF30473.1| S-adenosyl-methyltransferase [Neisseria gonorrhoeae NCCP11945] gi|317164866|gb|ADV08407.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae TCDC-NG08107] Length = 306 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 112/292 (38%), Positives = 166/292 (56%), Gaps = 20/292 (6%) Query: 39 VILDATFGAGGYSR-SFCKMG--SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95 V +D TFG GG+SR ++G +I D+DP A++ +E R K + + F+ Sbjct: 16 VYVDGTFGRGGHSRLILSRLGDAGRLIVFDKDPQAIAVAEELARSDK-RVGVVHGGFASF 74 Query: 96 QDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQA 151 Q + G VDG +FDLG+SS QID G RGFSF+ PLDMRM + G+SA++ + A Sbjct: 75 QTALDGLGIGKVDGALFDLGISSPQIDDGSRGFSFRFDAPLDMRMDTTRGMSAAEWIAVA 134 Query: 152 NVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPAT 211 + +DL ++ GEE+ + +I AIV +R +P TT+ L+ ++ + V + + PAT Sbjct: 135 SEQDLHEVIKNYGEERFSRQIVRAIVAQRAESPIDTTRKLAQIVAQNVRTRERGQ-DPAT 193 Query: 212 RSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMA 271 R+FQA+RIF+N E+EE+ L LK GG L V++FHSLEDR+VK+F K + Sbjct: 194 RTFQAIRIFINRELEEVGAVLPQVMCRLKEGGRLAVIAFHSLEDRIVKQFV-----KKYS 248 Query: 272 VRHMIPSNAH------PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 +PS A P I + + P + ++A N R+RSA LR RT Sbjct: 249 QHEPLPSWAAVREADLPEPPLKIVGRALKPGEAEIAANPRARSAVLRVAERT 300 >gi|225858187|ref|YP_002739697.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae 70585] gi|298254744|ref|ZP_06978330.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502138|ref|YP_003724078.1| S-adenosyl-methyltransferase [Streptococcus pneumoniae TCH8431/19A] gi|262826820|sp|C1CBB2|RSMH_STRP7 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|225720978|gb|ACO16832.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae 70585] gi|298237733|gb|ADI68864.1| S-adenosyl-methyltransferase [Streptococcus pneumoniae TCH8431/19A] Length = 316 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 112/309 (36%), Positives = 176/309 (56%), Gaps = 14/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 HV VLL + I +L+ P + +DAT G G+S S ++ A D+D A+ Q+ Sbjct: 7 HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66 Query: 77 TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y E+ + + F LQ + + GV DG+ +DLGVSS Q+D +RGFS++K Sbjct: 67 RLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ + ++A +VVN + DL RI GE+K + +IA I + R+ P +TT + Sbjct: 127 PLDMRMNQDASLTAYEVVNNYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186 Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ +I K V +K + HPA + FQA+RI VN+E+ + ++ A L G + V+ Sbjct: 187 LAEII-KLVKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVI 245 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F S +V IP + P + + +++K ++P+ E++ N RS Sbjct: 246 TFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKM-ELVSRKPILPSAEELEANNRSH 304 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 305 SAKLRVARK 313 >gi|170781760|ref|YP_001710092.1| S-adenosyl-methyltransferase MraW [Clavibacter michiganensis subsp. sepedonicus] gi|263446044|sp|B0RI49|RSMH_CLAMS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|169156328|emb|CAQ01476.1| S-adenosyl-methyltransferase [Clavibacter michiganensis subsp. sepedonicus] Length = 318 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 110/298 (36%), Positives = 162/298 (54%), Gaps = 9/298 (3%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74 H PVLLE+ + LL PA G V++DAT G G+S +F G ++ LDRDP A++ Sbjct: 7 HTPVLLERCLELLAPALQGEGAVLVDATLGMAGHSEAFLDALPGLRLVGLDRDPDALAIA 66 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E + + ++ L + + + G V GV FDLGVSS+Q+D +RGFS+ + Sbjct: 67 GERLARFGDRVHLVHTVYDGIGRALDGLGIGEVQGVFFDLGVSSLQLDRVERGFSYSQDA 126 Query: 132 PLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM +G++A+ VV + + +L RI GEEK A R A IV+ R+ P T+ Sbjct: 127 PLDMRMDGTAGLTAAQVVAEYDELELRRIFYDYGEEKLAPRYASRIVQAREVEPITTSAR 186 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L +IQ+ + HPA R FQALRI VN E+ LA+ + +A L GG ++V S+ Sbjct: 187 LVEIIQQATPAAVQRAGHPAKRVFQALRIEVNQELSVLARAMPAAIDRLAVGGRVVVESY 246 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SLEDR+VK+ RS V + H + + + + Q ++A N R+ S Sbjct: 247 QSLEDRIVKRELRVRSTSTAPVGLPVELPEHRPELKLLVRGAELADQHEIAQNPRAAS 304 >gi|89898443|ref|YP_515553.1| S-adenosyl-methyltransferase MraW [Chlamydophila felis Fe/C-56] gi|123483153|sp|Q253Y0|RSMH_CHLFF RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|89331815|dbj|BAE81408.1| tRNA/rRNA methyltransferase [Chlamydophila felis Fe/C-56] Length = 298 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 116/300 (38%), Positives = 159/300 (53%), Gaps = 20/300 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALD---RDPFAVSCGQE 76 H+PVL+ + ++L K D T GAGG++ +F ++++ D RD A+S +E Sbjct: 7 HIPVLVNECLSLFADRNPKFFCDVTLGAGGHAEAFLSAYPSIVSYDGSDRDTMALSLAKE 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ-KSGPLDM 135 + + + L A+F L + DG++ DLGVSSMQ+D RGFSFQ LDM Sbjct: 67 RLEKFGNRVHLHHASFEDLAQNPRENVYDGILADLGVSSMQLDTLSRGFSFQGDDHDLDM 126 Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM S G +AS+V+N +DL RI GEE Q A AIV+ R+ T +DL Sbjct: 127 RMDTSKGTTASEVLNTLREEDLGRIFREYGEEPQWKNAAKAIVQFRRHKKIITVRDLKEA 186 Query: 195 IQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 + + +IHP T FQALR++VN E +L L SA + L G LI++SF S Sbjct: 187 TTRVFPSYRLRKKIHPLTLIFQALRVYVNQEDVQLKVFLESAMRWLAPEGRLIIISFCSS 246 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 EDR VK FF R + M V + +TKKVV+PT E+ N R RSAKLR Sbjct: 247 EDRPVKWFF--REAEAMGVGKI------------LTKKVVMPTYEETRKNPRCRSAKLRC 292 >gi|306824545|ref|ZP_07457891.1| S-adenosyl-methyltransferase MraW [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304433332|gb|EFM36302.1| S-adenosyl-methyltransferase MraW [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 316 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 111/309 (35%), Positives = 176/309 (56%), Gaps = 14/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 HV VLL + I +L+ P + +DAT G G+S S ++ A D+D A+ Q+ Sbjct: 7 HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66 Query: 77 TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y E+ + + F LQ + + GV DG+ +DLGVSS Q+D +RGFS++K Sbjct: 67 RLAPYIEKGMVTFIKDNFRHLQARLQEAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ + ++A +VVN + DL RI GE+K + +IA I + R+ P +TT + Sbjct: 127 PLDMRMNQEASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186 Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ +I K+ +K + HPA + FQA+RI VN+E+ + ++ A L G + V+ Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVI 245 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F S +V IP + P + + +++K ++P+ E++ N RS Sbjct: 246 TFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKM-ELVSRKPILPSAEELVANNRSH 304 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 305 SAKLRVARK 313 >gi|148988090|ref|ZP_01819553.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae SP6-BS73] gi|168494684|ref|ZP_02718827.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae CDC3059-06] gi|147926554|gb|EDK77627.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae SP6-BS73] gi|183575411|gb|EDT95939.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae CDC3059-06] Length = 316 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 111/309 (35%), Positives = 177/309 (57%), Gaps = 14/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 HV VLL + I +L+ P + +DAT G G+S S ++ A D+D A+ Q+ Sbjct: 7 HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66 Query: 77 TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y E+ + + F LQ + + GV DG+ +DLGVSS Q+D +RGFS++K Sbjct: 67 RLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ + ++A +VVN + DL RI GE+K + +IA I + R+ P +TT + Sbjct: 127 PLDMRMNQDASLTAYEVVNNYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186 Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ +I K+ +K + HPA + FQA+RI VN+E+ + ++ A + L G + V+ Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMEMLALDGRISVI 245 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F S +V IP + P + + +++K ++P+ E++ N RS Sbjct: 246 TFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLRPKM-ELVSRKPILPSAEELEANNRSH 304 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 305 SAKLRVARK 313 >gi|307704193|ref|ZP_07641116.1| S-adenosyl-methyltransferase MraW [Streptococcus mitis SK597] gi|307622224|gb|EFO01238.1| S-adenosyl-methyltransferase MraW [Streptococcus mitis SK597] Length = 316 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 111/309 (35%), Positives = 176/309 (56%), Gaps = 14/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 HV VLL + I +L+ P + +DAT G G+S S ++ A D+D A+ Q+ Sbjct: 7 HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQQ 66 Query: 77 TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y E+ + + F LQ + + GV DG+ +DLGVSS Q+D +RGFS++K Sbjct: 67 RLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ + ++A +VVN + DL RI GE+K + +IA I + R+ P +TT + Sbjct: 127 PLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186 Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ +I K+ +K + HPA + FQA+RI VN+E+ + ++ A L G + V+ Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVI 245 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F S +V IP + P + + +++K ++P+ E++ N RS Sbjct: 246 TFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKM-ELVSRKPILPSAEELEANNRSH 304 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 305 SAKLRVARK 313 >gi|148996748|ref|ZP_01824466.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae SP11-BS70] gi|168576735|ref|ZP_02722593.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae MLV-016] gi|307066994|ref|YP_003875960.1| putative S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Streptococcus pneumoniae AP200] gi|147757323|gb|EDK64362.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae SP11-BS70] gi|183577531|gb|EDT98059.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae MLV-016] gi|306408531|gb|ADM83958.1| Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Streptococcus pneumoniae AP200] Length = 316 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 112/309 (36%), Positives = 176/309 (56%), Gaps = 14/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 HV VLL + I +L+ P + +DAT G G+S S ++ A D+D A+ Q+ Sbjct: 7 HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66 Query: 77 TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y E+ + + F LQ + + GV DG+ +DLGVSS Q+D +RGFS++K Sbjct: 67 RLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ + ++A +VVN + DL RI GE+K + +IA I + R+ P +TT + Sbjct: 127 PLDMRMNQDASLTAYEVVNHYDYHDLIRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186 Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ +I K V +K + HPA + FQA+RI VN+E+ + ++ A L G + V+ Sbjct: 187 LAEII-KLVKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVI 245 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F S +V IP + P + + +++K ++P+ E++ N RS Sbjct: 246 TFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKM-ELVSRKPILPSAEELEANNRSH 304 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 305 SAKLRVARK 313 >gi|227503272|ref|ZP_03933321.1| S-adenosyl-methyltransferase MraW [Corynebacterium accolens ATCC 49725] gi|227075775|gb|EEI13738.1| S-adenosyl-methyltransferase MraW [Corynebacterium accolens ATCC 49725] Length = 346 Score = 177 bits (448), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 117/329 (35%), Positives = 177/329 (53%), Gaps = 27/329 (8%) Query: 10 SSAIHHTIGD---HVPVLLEKVIALLNP---APGK--VILDATFGAGGYSRSFCKM--GS 59 ++ +++ + D HVPV+ E++ LL P A G V++DAT GAGG+S F + + Sbjct: 3 TTNLNYDVADNHGHVPVMRERMAELLRPGVEAAGSQAVLVDATLGAGGHSEYFLQTFPQA 62 Query: 60 NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ-----------DYVPDKGVDGVV 108 VI +DRD A+ + + +F A F +L D G+ G + Sbjct: 63 RVIGVDRDEQALQNASARLEPFSPRFCAVNARFDELGTAIAQGEGDIFDAARAHGIAGAL 122 Query: 109 FDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEK 167 FDLGVSSMQ+D +RGF+++ PLDMRM S G++A+DV+N + DL RIL G+E+ Sbjct: 123 FDLGVSSMQLDQAERGFAYKTDAPLDMRMDPSHGLTAADVLNTYSHGDLARILKTYGDER 182 Query: 168 QASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIE 226 A +IA A++K R+ PF T+ L L+ T+ ++ HPA R+FQALR+ VN E+E Sbjct: 183 FAGKIASAVLKEREKEPFSTSGRLVELLYSTIPAATRRTGGHPAKRTFQALRVEVNRELE 242 Query: 227 ELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAV 284 + L AL G + +S+ SLEDRLVK F S S + +P A Sbjct: 243 AIENVLPVITSALSIGARAVFMSYQSLEDRLVKAAFKDLSTSTTPAGLPMDLPGTA--PE 300 Query: 285 FQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 F ++T+ + +V N R+ S ++RA Sbjct: 301 FATVTRGAEKASAAEVEENSRAASVRVRA 329 >gi|168486616|ref|ZP_02711124.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae CDC1087-00] gi|168490752|ref|ZP_02714895.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae CDC0288-04] gi|183570380|gb|EDT90908.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae CDC1087-00] gi|183574822|gb|EDT95350.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae CDC0288-04] gi|301801259|emb|CBW33934.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae INV200] gi|327390750|gb|EGE89090.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae GA04375] Length = 316 Score = 177 bits (448), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 112/305 (36%), Positives = 175/305 (57%), Gaps = 14/305 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 HV VLL + I +L+ P + +DAT G G+S S ++ A D+D A+ Q+ Sbjct: 7 HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66 Query: 77 TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y E+ + + F LQ + + GV DG+ +DLGVSS Q+D +RGFS++K Sbjct: 67 RLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ + ++A +VVN + DL RI GE+K + +IA I + R+ P +TT + Sbjct: 127 PLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186 Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ +I K V +K + HPA + FQA+RI VN+E+ + ++ A L G + V+ Sbjct: 187 LAEII-KLVKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVI 245 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F S +V IP + P + + +++K ++P+ E++ N RS Sbjct: 246 TFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKM-ELVSRKPILPSAEELEANNRSH 304 Query: 308 SAKLR 312 SAKLR Sbjct: 305 SAKLR 309 >gi|167586011|ref|ZP_02378399.1| S-adenosyl-methyltransferase MraW [Burkholderia ubonensis Bu] Length = 313 Score = 177 bits (448), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 117/312 (37%), Positives = 183/312 (58%), Gaps = 21/312 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGS--NVIALDRDPFAVSCGQE 76 H VLL++ + L P + +D TFG GG+SR+ ++G+ +IA D+DP A+ Q Sbjct: 7 HRTVLLDEAVDALVTRPDGIYVDGTFGRGGHSRAVLARLGAAGRLIAFDKDPRAIETAQ- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + D + F++ +F+ +Q + +G V GV+ DLGVSS Q+D RGFSF+ GPL Sbjct: 66 GIEDAR--FAIVHDSFASMQGALAARGIGKVSGVLLDLGVSSPQVDDPQRGFSFRADGPL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTT 188 DMRM + G SA++ + +A++++LT ++ GEE+ A +IA A+V RR + P +T Sbjct: 124 DMRMDPTRGESAAEWLARASLQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDST 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ ++ V + + PATR+FQA+RI VN E+ +L L +A L+ GG L+V+ Sbjct: 184 GELAQIVGHVVKTREKGK-DPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVI 242 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNRR 305 SFHSLEDR+VK+F + + AV +P A S K++ P+ +VA N R Sbjct: 243 SFHSLEDRIVKRFMQAHA-SAPAVDRRLPIRA--VDLPSPPLKIIGRKFPSDAEVAANPR 299 Query: 306 SRSAKLRAGMRT 317 +RSA +R R Sbjct: 300 ARSAVMRIAERV 311 >gi|123967726|ref|YP_001008584.1| S-adenosylmethionine-dependent methyltransferase [Prochlorococcus marinus str. AS9601] gi|262824992|sp|A2BNW6|RSMH_PROMS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|123197836|gb|ABM69477.1| Predicted S-adenosylmethionine-dependent methyltransferase [Prochlorococcus marinus str. AS9601] Length = 300 Score = 177 bits (448), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 112/310 (36%), Positives = 174/310 (56%), Gaps = 42/310 (13%) Query: 19 DHVPVLLEKVIALLNPAPGKVI-------LDATFGAGGYSRSFCKMGS--NVIALDRDPF 69 +H V+ ++++A L P +I +DAT G GG+S + S N+I LD+DPF Sbjct: 12 NHQSVMTDEIMASLEHYP--LIHNNQLKGIDATLGGGGHSYHLLRKYSDLNIIGLDQDPF 69 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 A + + ++K + + + F+ D+VP + V V+ DLGV+S QID RGFSFQK Sbjct: 70 ARKSASKKLDEFKNRIDIRASNFA---DFVPKEKVSFVIADLGVNSNQIDDPKRGFSFQK 126 Query: 130 SGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI-VKRRQSAPFQT 187 GPLDMRM+ + A ++ N KDL ++ GEE+ + +IA I + +++ + Sbjct: 127 DGPLDMRMNPFLDVDADKLIEALNEKDLANLIYKYGEERLSRKIARKIKLDLKENGKYSG 186 Query: 188 TQDLSSLIQ-----KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 T++L+ I K Y +IHPATR+FQALRI VN EIE L + L+ + L G Sbjct: 187 TKELAYSIAGCFPPKQRY----KKIHPATRTFQALRIAVNKEIEVLEKFLQVVPEWLLPG 242 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G++ ++SFHSLEDRLVK F + +++TKK + P+++++ Sbjct: 243 GIISIISFHSLEDRLVKSCFKNDQR-----------------LKNLTKKPITPSEQEIEL 285 Query: 303 NRRSRSAKLR 312 N+R+RS KLR Sbjct: 286 NKRARSGKLR 295 >gi|168490031|ref|ZP_02714230.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae SP195] gi|182683307|ref|YP_001835054.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae CGSP14] gi|221231213|ref|YP_002510365.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae ATCC 700669] gi|298230654|ref|ZP_06964335.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae str. Canada MDR_19F] gi|262827179|sp|B8ZL51|RSMH_STRPJ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262827224|sp|B2ISQ2|RSMH_STRPS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|182628641|gb|ACB89589.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae CGSP14] gi|183571591|gb|EDT92119.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae SP195] gi|220673673|emb|CAR68164.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae ATCC 700669] gi|332075180|gb|EGI85650.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae GA17570] Length = 316 Score = 177 bits (448), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 112/305 (36%), Positives = 175/305 (57%), Gaps = 14/305 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 HV VLL + I +L+ P + +DAT G G+S S ++ A D+D A+ Q+ Sbjct: 7 HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66 Query: 77 TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y E+ + + F LQ + + GV DG+ +DLGVSS Q+D +RGFS++K Sbjct: 67 RLAPYIEKGMVTFIKDNFRHLQARLRETGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ + ++A +VVN + DL RI GE+K + +IA I + R+ P +TT + Sbjct: 127 PLDMRMNQDASLTAYEVVNNYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186 Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ +I K V +K + HPA + FQA+RI VN+E+ + ++ A L G + V+ Sbjct: 187 LAEII-KLVKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVI 245 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F S +V IP + P + + +++K ++P+ E++ N RS Sbjct: 246 TFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKM-ELVSRKPILPSAEELEANNRSH 304 Query: 308 SAKLR 312 SAKLR Sbjct: 305 SAKLR 309 >gi|15902346|ref|NP_357896.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae R6] gi|116515442|ref|YP_815821.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae D39] gi|225853917|ref|YP_002735429.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae JJA] gi|30315982|sp|P59658|RSMH_STRR6 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|122279293|sp|Q04MC7|RSMH_STRP2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262825666|sp|C1CCA8|RSMH_STRZJ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|1524350|emb|CAB01927.1| OrfD [Streptococcus pneumoniae] gi|15457856|gb|AAK99106.1| YllC protein [Streptococcus pneumoniae R6] gi|116076018|gb|ABJ53738.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae D39] gi|225724201|gb|ACO20054.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae JJA] Length = 316 Score = 177 bits (448), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 112/305 (36%), Positives = 175/305 (57%), Gaps = 14/305 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 HV VLL + I +L+ P + +DAT G G+S S ++ A D+D A+ Q+ Sbjct: 7 HVTVLLHETIDMLDVKPEGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66 Query: 77 TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y E+ + + F LQ + + GV DG+ +DLGVSS Q+D +RGFS++K Sbjct: 67 RLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ + ++A +VVN + DL RI GE+K + +IA I + R+ P +TT + Sbjct: 127 PLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186 Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ +I K V +K + HPA + FQA+RI VN+E+ + ++ A L G + V+ Sbjct: 187 LAEII-KLVKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVI 245 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F S +V IP + P + + +++K ++P+ E++ N RS Sbjct: 246 TFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKM-ELVSRKPILPSAEELEANNRSH 304 Query: 308 SAKLR 312 SAKLR Sbjct: 305 SAKLR 309 >gi|229013103|ref|ZP_04170268.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus mycoides DSM 2048] gi|229134728|ref|ZP_04263537.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus BDRD-ST196] gi|228648774|gb|EEL04800.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus BDRD-ST196] gi|228748357|gb|EEL98217.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus mycoides DSM 2048] Length = 302 Score = 177 bits (448), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 108/298 (36%), Positives = 167/298 (56%), Gaps = 11/298 (3%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDY 81 +++ + L+ P +D T G GG+S G +IA D+D A+ +E Y Sbjct: 1 MKETVDGLDIKPSGTYVDCTLGGGGHSSYLLSQLTDGGKLIAFDQDEIAIQNAKEKFSSY 60 Query: 82 KEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138 EQF ++ F L + + + G VDG++FDLGVSS Q+D +RGFS+ PLDMRM Sbjct: 61 GEQFVTVKSNFRYLSEKLHELGITEVDGILFDLGVSSPQLDTPERGFSYHHDAPLDMRMD 120 Query: 139 CSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK 197 ++A DVVN + + L RI GEEK + +I I R++ +TT +L LI++ Sbjct: 121 QDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQITRKIEAYRENKAIETTGELVELIKE 180 Query: 198 TVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 + ++ HPA R FQA+RI VN+E++ + L SA +K GG + V++FHSLEDR Sbjct: 181 GIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIDMVKPGGRVSVITFHSLEDR 240 Query: 257 LVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 + K F S + ++ +IP P + + IT+K ++P+ ++ N R+RSAKLR Sbjct: 241 ICKTTFKRNSTTPQLPQGLPIIPDEFKPKL-KLITRKPILPSDIELEENNRARSAKLR 297 >gi|20138864|sp|O07665|RSMH_ENTHR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|2624083|emb|CAA74239.1| mraW [Enterococcus hirae] Length = 319 Score = 177 bits (448), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 114/309 (36%), Positives = 176/309 (56%), Gaps = 22/309 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQE 76 H V+L++ + LN P + +D T G G+S ++ +N + A D+D A+ + Sbjct: 7 HYTVMLKETVDGLNIKPDGIYVDCTLGGAGHSEYLLSQLNTNGHLYAFDQDQKAIDHAKV 66 Query: 77 TMRDYKEQ--FSLFQATFSQLQ----DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + Y E+ + +A F +L+ ++VP VDG+++DLGVSS Q+D +RGFS+ + Sbjct: 67 RLAPYIEKGMVTFIKANFRELEAKIKEHVPQ--VDGILYDLGVSSPQLDEAERGFSYHQD 124 Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM S +SA DVVN+ + +L +I GEEK + +IA I + R+ P QTT Sbjct: 125 APLDMRMDQSAPLSAYDVVNEYSYNELVKIFFRYGEEKFSKQIAREIERVRKIHPIQTTG 184 Query: 190 DLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I+ + ++ HPA R FQA+RI VN+E+ L A + LK G + V+ Sbjct: 185 ELVEIIKDVIPAPARRKGGHPAKRIFQAIRIAVNDELGAEEASLEQAIRLLKINGRISVI 244 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPS-NAHPAVFQS----ITKKVVVPTQEDVAFN 303 +FHSLEDR+VK F S V+ + P P FQ I +K ++P++E+++ N Sbjct: 245 TFHSLEDRIVKSMFKEYS----TVQDLPPGLPVVPEEFQPELKLINRKPILPSEEELSEN 300 Query: 304 RRSRSAKLR 312 RSRSAKLR Sbjct: 301 NRSRSAKLR 309 >gi|218133493|ref|ZP_03462297.1| hypothetical protein BACPEC_01360 [Bacteroides pectinophilus ATCC 43243] gi|217990868|gb|EEC56874.1| hypothetical protein BACPEC_01360 [Bacteroides pectinophilus ATCC 43243] Length = 312 Score = 177 bits (448), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 104/311 (33%), Positives = 172/311 (55%), Gaps = 19/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VLL++ I LN P + +D T G GG+S K G +I +D+D A+ +E Sbjct: 5 HKSVLLDETIESLNIKPNGIYVDGTLGGGGHSYEIAKRLTDGGRLIGIDQDEDAIRAAKE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + ++ ++ ++ + + + + + GV DG++ D+GVSS Q+D +RGF++++ PL Sbjct: 65 RLSEFADRVTIVRDNYCNMPKVLDELGVSKVDGILLDIGVSSYQLDEAERGFTYKQDAPL 124 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM ++A D+VN + +DL RI+ GE+K A IA IV+ RQ P +TT +L Sbjct: 125 DMRMDQRQEMTAKDIVNGYSEEDLYRIIRDYGEDKFAKNIAKHIVQARQIKPVETTFELD 184 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + + HPA ++FQA+RI +N E+E L + + + L G L +++FH Sbjct: 185 EIIKAAIPMKFRATGGHPAKKTFQAIRIELNRELEVLDESIDAMTDLLNDNGRLCIITFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF------QSITKKVVVPTQEDVAFNRR 305 SLEDR+VK F P + V + IT+K +VP +E++ N+R Sbjct: 245 SLEDRIVKTRFRKNENPCTC-----PPDFPVCVCGKKPKGKVITRKPIVPDEEELEENKR 299 Query: 306 SRSAKLRAGMR 316 ++S+KLR R Sbjct: 300 AKSSKLRVFER 310 >gi|256850925|ref|ZP_05556314.1| MraW methylase [Lactobacillus jensenii 27-2-CHN] gi|260661139|ref|ZP_05862053.1| MraW methylase [Lactobacillus jensenii 115-3-CHN] gi|282934162|ref|ZP_06339440.1| S-adenosyl-methyltransferase MraW [Lactobacillus jensenii 208-1] gi|297205805|ref|ZP_06923200.1| S-adenosyl-methyltransferase MraW [Lactobacillus jensenii JV-V16] gi|256615987|gb|EEU21175.1| MraW methylase [Lactobacillus jensenii 27-2-CHN] gi|260548076|gb|EEX24052.1| MraW methylase [Lactobacillus jensenii 115-3-CHN] gi|281301776|gb|EFA94042.1| S-adenosyl-methyltransferase MraW [Lactobacillus jensenii 208-1] gi|297148931|gb|EFH29229.1| S-adenosyl-methyltransferase MraW [Lactobacillus jensenii JV-V16] Length = 317 Score = 177 bits (448), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 114/312 (36%), Positives = 176/312 (56%), Gaps = 17/312 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSNV-IALDRDPFAVSCGQET 77 H VLL + I LN + +DATFG GG++R K+ + V + D+D +A++ ++ Sbjct: 7 HTSVLLRETIDNLNVKDEGLYVDATFGGGGHARYLLSKLNTGVLVGFDQDNYAINAAKDN 66 Query: 78 MRDY-----KEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 +Y + Q + FS L D + G+DG+ +DLGVSS Q D DRGFS++ Sbjct: 67 FSEYLSGNHQPQLIMVHDNFSHLTDNLNKLGIKDGIDGIYYDLGVSSPQFDQPDRGFSYR 126 Query: 129 KSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 LDMRM+ + A VVN + L +L G+EK + +IA IV+RRQ P +T Sbjct: 127 FDARLDMRMNQEQELDAYQVVNSYSQSQLADVLYQYGDEKFSRQIARKIVQRRQQKPIET 186 Query: 188 TQDLSSLIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T +L LI++ + +K HPA +SFQA+R+ VN+E++ L L+ A + L+ GG + Sbjct: 187 TFELVELIKEAIPAAKRRTGGHPAKKSFQAIRVEVNHELDSLKASLQEAIELLRPGGRIS 246 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 V++F S ED++VKK F S +V R +IP N P + + + +K ++ T ++A N Sbjct: 247 VITFQSHEDKIVKKIFKENS-EVDVPRGIPIIPDNLKPKL-KLVNRKPILATASELANNN 304 Query: 305 RSRSAKLRAGMR 316 RS SAKLR + Sbjct: 305 RSHSAKLRVAEK 316 >gi|325971088|ref|YP_004247279.1| ribosomal RNA small subunit methyltransferase H [Spirochaeta sp. Buddy] gi|324026326|gb|ADY13085.1| Ribosomal RNA small subunit methyltransferase H [Spirochaeta sp. Buddy] Length = 296 Score = 177 bits (448), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 122/305 (40%), Positives = 173/305 (56%), Gaps = 30/305 (9%) Query: 20 HVPVLLEKVIALLNPAPGK--VILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQ 75 H V+ ++V+ L G+ ++D T G GG++ F N VI LDRD Sbjct: 5 HYSVMAQEVLQYLVVPEGREATMVDCTCGEGGHTHLFLSTHPNLKVIGLDRDTTIQQKAI 64 Query: 76 ETMRDYKEQFS----LFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E M+++ +F F F+Q ++ V D ++FDLG+SS + RGFSF+K Sbjct: 65 ERMKEFGSRFEPKNIWFNDFFAQGEENV----YDLILFDLGISSFHYEESHRGFSFRKDE 120 Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMR+ S ISA DVVN + L ++ GEE+ + RIA +IV+RR+ A T+++ Sbjct: 121 VLDMRLDESASISAFDVVNGYQEERLADVIFNFGEERYSRRIARSIVERRKLAKISTSEE 180 Query: 191 LSSLIQKTVYFSKNNR---IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 L+S+I K V N R IHPATR+FQA+RI VN E++ + L+ A KALK+GG + V Sbjct: 181 LASIIYKAV--PPNYRYGHIHPATRTFQAIRIEVNRELDRIEPALKGAVKALKSGGRIAV 238 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +SFHSLEDR VK F K MA PA+ + +TKK ++PT ++ N SR Sbjct: 239 ISFHSLEDRQVKWLF-----KGMA------EGDEPAI-RILTKKPLIPTDQEREENAASR 286 Query: 308 SAKLR 312 SAKLR Sbjct: 287 SAKLR 291 >gi|150016452|ref|YP_001308706.1| S-adenosyl-methyltransferase MraW [Clostridium beijerinckii NCIMB 8052] gi|263446053|sp|A6LTS0|RSMH_CLOB8 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|149902917|gb|ABR33750.1| S-adenosyl-methyltransferase MraW [Clostridium beijerinckii NCIMB 8052] Length = 310 Score = 177 bits (448), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 110/303 (36%), Positives = 165/303 (54%), Gaps = 12/303 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 HV VLL + I LN + +D T G G+S S +I +D+D A+ +E Sbjct: 5 HVSVLLNECIEALNIKENGIYVDGTLGGAGHSSHILSNLSKDGMLIGIDQDQDALKAAKE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++D+ E + F + + D + VDG++ DLGVSS Q+D RGFS+ K PL Sbjct: 65 KLKDF-ENVKYVHSNFYNIDSILNDLDIEKVDGILMDLGVSSYQLDEASRGFSYMKDAPL 123 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ + SA ++VN + L +I+ GEE+ A RIA+ I+ RR P +TT +L Sbjct: 124 DMRMNRENDFSAYNIVNNYDEDSLYKIIKDYGEERFAKRIANFIINRRIEKPIETTFELV 183 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + + HPA R+FQA+RI VN+E++ L + + L GG + +++FH Sbjct: 184 DIIKAAIPAKMRREGPHPAKRTFQAIRIEVNSELKILNKTIEDGVNRLNKGGRMAIITFH 243 Query: 252 SLEDRLVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK F + M P V ++I KK + PT+E++ N RSRSA Sbjct: 244 SLEDRIVKLKFRELENPCTCPKEFPMCICGKSPLV-KNIAKKGIAPTKEEIEENPRSRSA 302 Query: 310 KLR 312 KLR Sbjct: 303 KLR 305 >gi|313837465|gb|EFS75179.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL037PA2] gi|314971672|gb|EFT15770.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL037PA3] Length = 337 Score = 177 bits (448), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 111/304 (36%), Positives = 169/304 (55%), Gaps = 11/304 (3%) Query: 20 HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCG 74 HVPV+ +++ LL P + +V +D T G GG++ + +V + +DRD A++ Sbjct: 14 HVPVMRARILDLLGPTLESGRRVHVDGTLGMGGHAEAVLTRFPDVQLVGIDRDRQALTMA 73 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++ + ++ L A +L + + D G VD V+ DLG+SS+QID +RGFS+ Sbjct: 74 GARLKPFVDRVHLVHAVHDELPEVLDDLGLGRVDSVLLDLGLSSLQIDEVNRGFSYSVDS 133 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S G +A+ V+N+++ DL RIL GEEK A RI AIV R P +T+ Sbjct: 134 PLDMRMDQSRGRTAAQVLNESDPGDLVRILHEYGEEKFADRIVRAIVTERDRQPIETSGR 193 Query: 191 LSSLIQKTVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L +I + + + ++ HPA R+FQALRI VN E+E L+ L A L GG + V+ Sbjct: 194 LVEIITRAIPVAVRHKRSGHPAKRTFQALRIAVNREMETLSAVLPRALDRLNVGGRIAVL 253 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 ++HSLEDR VK+ F I + A F +T+ P ++++ N RS S Sbjct: 254 AYHSLEDRPVKEVFREACDDTAPAGLPIVPESMAAKFSPVTRGAERPDADEMSANPRSAS 313 Query: 309 AKLR 312 A+LR Sbjct: 314 ARLR 317 >gi|306832860|ref|ZP_07465994.1| S-adenosyl-methyltransferase MraW [Streptococcus bovis ATCC 700338] gi|304424999|gb|EFM28131.1| S-adenosyl-methyltransferase MraW [Streptococcus bovis ATCC 700338] Length = 338 Score = 177 bits (448), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 115/323 (35%), Positives = 179/323 (55%), Gaps = 19/323 (5%) Query: 6 CKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMG--SNVI 62 K M++ HH + VLL + + +L+ P + +DAT G G+S K+G ++ Sbjct: 20 MKGMTTDFHH-----ITVLLHETVDMLDIKPDGIYVDATLGGAGHSEYLLSKLGPTGHLY 74 Query: 63 ALDRDPFAVSCGQETMRDYKE--QFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQ 117 A D+D A+ Q ++DY E Q + + F L + GV DG+++DLGVSS Q Sbjct: 75 AFDQDQTAIDNAQIRLKDYIEKGQVTFIKDNFRNLVSNLAMHGVTEIDGILYDLGVSSPQ 134 Query: 118 IDCGDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 +D +RGFS++K LDMRM+ +SA DVVN + DL RI GE+K + +IA I Sbjct: 135 LDERERGFSYKKDASLDMRMNRDQDLSAYDVVNTYDYHDLVRIFFKYGEDKFSKQIARKI 194 Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRS 234 + R P +TT +L+ +I K+ +K + HPA + FQA+RI VN+E+ + ++ Sbjct: 195 EQARTVKPIETTTELAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQ 253 Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVV 293 A + L G + V++FHSLEDRL K+ F S V IP + P + + +K + Sbjct: 254 AIELLAVDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPEDMQPKL-TLVNRKPI 312 Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316 +P++E++ N RS SAKLR + Sbjct: 313 LPSEEELEVNNRSHSAKLRVARK 335 >gi|229019122|ref|ZP_04175956.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus AH1273] gi|229025365|ref|ZP_04181783.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus AH1272] gi|228735950|gb|EEL86527.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus AH1272] gi|228742138|gb|EEL92304.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus AH1273] Length = 302 Score = 177 bits (448), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 108/298 (36%), Positives = 167/298 (56%), Gaps = 11/298 (3%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDY 81 +++ + L+ P +D T G GG+S G +IA D+D A+ +E Y Sbjct: 1 MKETVDGLDIKPSGTYVDCTLGGGGHSSYLLSQLTDGGKLIAFDQDEIAIQNAKEKFSSY 60 Query: 82 KEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138 EQF ++ F L + + + G VDG++FDLGVSS Q+D +RGFS+ PLDMRM Sbjct: 61 GEQFVTVKSNFRYLSEKLHELGITEVDGILFDLGVSSPQLDTPERGFSYHHDAPLDMRMD 120 Query: 139 CSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK 197 ++A DVVN + + L RI GEEK + +I I R++ +TT +L LI++ Sbjct: 121 QDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIVRKIEAYRENKAIETTGELVELIKE 180 Query: 198 TVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 + ++ HPA R FQA+RI VN+E++ + L SA +K GG + V++FHSLEDR Sbjct: 181 GIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIDMVKPGGRVSVITFHSLEDR 240 Query: 257 LVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 + K F S + ++ +IP P + + IT+K ++P+ ++ N R+RSAKLR Sbjct: 241 ICKTTFKRNSTTPQLPPGLPIIPDEFKPKL-KLITRKPILPSDIELEENNRARSAKLR 297 >gi|221202506|ref|ZP_03575536.1| S-adenosyl-methyltransferase MraW [Burkholderia multivorans CGD2M] gi|221208172|ref|ZP_03581177.1| S-adenosyl-methyltransferase MraW [Burkholderia multivorans CGD2] gi|221172075|gb|EEE04517.1| S-adenosyl-methyltransferase MraW [Burkholderia multivorans CGD2] gi|221177601|gb|EEE10018.1| S-adenosyl-methyltransferase MraW [Burkholderia multivorans CGD2M] Length = 313 Score = 177 bits (448), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 116/312 (37%), Positives = 183/312 (58%), Gaps = 21/312 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMG--SNVIALDRDPFAVSCGQE 76 H VLL++ + L P + +D TFG GG+SR+ ++G +IA D+DP A+ Q Sbjct: 7 HRTVLLDEAVESLVTRPDGIYVDGTFGRGGHSRAVLARLGPAGRLIAFDKDPRAIETAQ- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 M D + FS+ +F+ ++ + +G++ GV+ DLGVSS Q+D RGFSF+ GPL Sbjct: 66 AMADAR--FSIVHDSFASMRGALAARGIEKVSGVLLDLGVSSPQVDDPARGFSFRADGPL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTT 188 DMRM + G SA++ + +A++++LT ++ GEE+ A +IA A+V RR + P +T Sbjct: 124 DMRMDPTRGESAAEWLARASLQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDST 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ ++ V + + PATR+FQA+RI VN E+ +L L +A L+ GG L+V+ Sbjct: 184 GELAQIVGHVVKTREKGK-DPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVI 242 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNRR 305 SFHSLEDR+VK+F + + AV +P A S K++ P++ +V N R Sbjct: 243 SFHSLEDRIVKRFMQAHA-SAPAVDRRLPIRA--VDLPSPPLKIIGRQFPSEAEVVANPR 299 Query: 306 SRSAKLRAGMRT 317 +RSA +R R Sbjct: 300 ARSAVMRIAERV 311 >gi|159902730|ref|YP_001550074.1| S-adenosylmethionine-dependent methyltransferase [Prochlorococcus marinus str. MIT 9211] gi|226709923|sp|A9BD32|RSMH_PROM4 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|159887906|gb|ABX08120.1| Predicted S-adenosylmethionine-dependent methyltransferase [Prochlorococcus marinus str. MIT 9211] Length = 305 Score = 177 bits (448), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 115/312 (36%), Positives = 177/312 (56%), Gaps = 38/312 (12%) Query: 19 DHVPVLLEKVIALLNPAPGKVI-----LDATFGAGGYSRSFCKM--GSNVIALDRDPFAV 71 +H PVL ++I ++ P +I +DAT G GG+S + G +VI LD+DP AV Sbjct: 13 NHTPVLANELIEIIKKLPEDLIKNCLIIDATIGGGGHSSLVLETFPGISVIGLDQDPKAV 72 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + E ++ + ++ + FS ++ P K V V DLGVSS Q+D G RGFSF+ +G Sbjct: 73 AAASEHLKIFGDRAKIETTNFS---NFTPSKKVAMVFADLGVSSPQLDEGSRGFSFRLNG 129 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIA----HAIVKRRQSAPFQ 186 PLDMRM+ G +A++++++ + +L ++ GEE+ + RIA H + K+ P+ Sbjct: 130 PLDMRMNQIDGTNAAELIDRLSENELANLIFKYGEERFSRRIAKRIKHDLAKQ---GPYS 186 Query: 187 TTQDLSSLIQKTVYFSK--NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 T L+ I Y K N R+HPAT++FQALRI +N+E++ L+ L+ A + L GL Sbjct: 187 GTIALAYAIA-GCYPPKLRNRRVHPATKTFQALRIAINHELDVLSVLLKKAPEWLLDDGL 245 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 V+SFHSLEDRLVKK F + + + IT+K ++ T +++ N Sbjct: 246 FAVISFHSLEDRLVKKSFLTDTR-----------------LERITRKPLIATTNEISINP 288 Query: 305 RSRSAKLRAGMR 316 RSRSAK+R R Sbjct: 289 RSRSAKMRVARR 300 >gi|332686267|ref|YP_004456041.1| rRNA small subunit methyltransferase H [Melissococcus plutonius ATCC 35311] gi|332370276|dbj|BAK21232.1| rRNA small subunit methyltransferase H [Melissococcus plutonius ATCC 35311] Length = 316 Score = 177 bits (448), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 109/312 (34%), Positives = 175/312 (56%), Gaps = 13/312 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 +H VLL++ I LN P + +D T G GG+S+ S ++ D+D A++ Sbjct: 6 NHQTVLLKETINELNINPNGIYVDCTLGGGGHSQYLLSKLSEKGHLYVFDQDEMALTAAS 65 Query: 76 ETMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + Y K+ + +A F L++ + +K V DG+ +DLGVSS Q+D +RGFS+ Sbjct: 66 KRLAPYVEKQMVTFIKANFRLLKEKLFEKHVFQVDGIFYDLGVSSPQLDEAERGFSYHHD 125 Query: 131 GPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM S ++A ++VN + ++L ++ EEK + +IA I + R + QTT Sbjct: 126 APLDMRMDQTSSLTAYEIVNHYSYENLVKVFFRYSEEKFSKQIAREIERVRLNQTIQTTG 185 Query: 190 DLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I+K + ++ HPA R FQA+RI VN+E+ + L A + L G + V+ Sbjct: 186 ELVEIIKKVIPAPARRTGGHPAKRIFQAIRIAVNDELGAIEVSLEQAIELLNKNGRIGVI 245 Query: 249 SFHSLEDRLVKKFFASRS--GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 +FHSLEDR+VK F S S + ++P P + + ITKK ++P++E+ N RS Sbjct: 246 TFHSLEDRIVKNMFKSYSTPKDLPPGLPVVPEEYQP-ILKVITKKPIIPSEEEQKQNNRS 304 Query: 307 RSAKLRAGMRTV 318 RSAKLR + + Sbjct: 305 RSAKLRIAEKII 316 >gi|295092968|emb|CBK82059.1| S-adenosyl-methyltransferase MraW [Coprococcus sp. ART55/1] Length = 311 Score = 177 bits (448), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 101/302 (33%), Positives = 173/302 (57%), Gaps = 9/302 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VLLE+ I LN P + +D T G G+S K G +I +D+D A++ + Sbjct: 5 HKSVLLEETIDNLNIKPDGIYVDGTLGGAGHSEQIVKRLGEGGRLIGIDQDEDAIAAASK 64 Query: 77 TMRDYKEQFSLFQ---ATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + Y ++ ++ + F ++ D + + VDG++ DLGVSS Q+D DRGF+++ PL Sbjct: 65 RLEPYGDKVTIVRDNYQNFRRILDELNIQKVDGILLDLGVSSYQLDNADRGFTYRVDAPL 124 Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM +A D+VN + +L RIL GEE+ A IA+ I K R++ +TT++L+ Sbjct: 125 DMRMDNRQTKTAKDIVNDYSEAELFRILKDYGEERYAKSIAYHICKYRENKVIETTEELN 184 Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ ++ ++N + HP+ ++FQA+RI +N E++ L + +L GG L +++FH Sbjct: 185 DIIRGSIPAKARNGQGHPSKQTFQAIRIELNRELDVLRDSIDGMIASLNPGGRLCIITFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK F + + + + + + IT+K ++P + ++ N RS+S+K Sbjct: 245 SLEDRIVKLAFRKNENPCICPPNFPVCTCGRKPLGKVITRKPIIPGERELEENSRSKSSK 304 Query: 311 LR 312 LR Sbjct: 305 LR 306 >gi|307708181|ref|ZP_07644648.1| S-adenosyl-methyltransferase MraW [Streptococcus mitis NCTC 12261] gi|307615627|gb|EFN94833.1| S-adenosyl-methyltransferase MraW [Streptococcus mitis NCTC 12261] Length = 316 Score = 177 bits (448), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 111/309 (35%), Positives = 176/309 (56%), Gaps = 14/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 HV VLL + I +L+ P + +DAT G G+S S ++ A D+D A+ Q+ Sbjct: 7 HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66 Query: 77 TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y E+ + + F LQ + + GV DG+ +DLGVSS Q+D +RGFS++K Sbjct: 67 RLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ + ++A +VVN + DL RI GE+K + +IA I + R+ P +TT + Sbjct: 127 PLDMRMNQEASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186 Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ +I K+ +K + HPA + FQA+RI VN+E+ + ++ A L G + V+ Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVI 245 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F S +V IP + P + + +++K ++P+ E++ N RS Sbjct: 246 TFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKM-ELVSRKPILPSAEELEANNRSH 304 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 305 SAKLRVARK 313 >gi|301510055|ref|ZP_07235292.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii AB058] Length = 307 Score = 177 bits (448), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 122/311 (39%), Positives = 175/311 (56%), Gaps = 26/311 (8%) Query: 20 HVPVLL-EKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDP----FAV 71 H+ VLL E V +LL V +DATFG GG++R K+ N V A D+DP A Sbjct: 3 HISVLLFETVESLLADRTIGVYIDATFGRGGHTRLLLSKLDENARVYAFDKDPQALEVAA 62 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQ 128 + QE R F++ A+F+ +++ + + GV DG++ DLGVSS Q+D +RGFSF Sbjct: 63 ALAQEDPR-----FTIIHASFADIKEKMQEIGVQSVDGIMADLGVSSPQLDQAERGFSFM 117 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM S G++A++ + + +DL I+ GEE+ + RIA AI +Q+ T Sbjct: 118 QDGPLDMRMDNSKGLTAAEWLLEVEEEDLANIIYQYGEERYSRRIARAI---KQAGKLDT 174 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T L+ ++ KT + HPATR+FQA+RI +N E++++ L A LK G L V Sbjct: 175 TAQLAEIV-KTAHPKWEKHKHPATRTFQAIRIAINKELDDIEVFLPQAVDLLKPKGRLSV 233 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV--VVPTQEDVAFNRR 305 +SFHSLEDRL+K+F S +P V KK+ V ++E+V N R Sbjct: 234 ISFHSLEDRLIKQFIQKESTLAEDSGWGMPQQ---QVDTRRLKKISRVRASEEEVKANPR 290 Query: 306 SRSAKLRAGMR 316 SRSA LR R Sbjct: 291 SRSAWLRVAER 301 >gi|307126547|ref|YP_003878578.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae 670-6B] gi|306483609|gb|ADM90478.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae 670-6B] Length = 316 Score = 177 bits (448), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 111/309 (35%), Positives = 177/309 (57%), Gaps = 14/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 HV VLL + I +L+ P + +DAT G G+S S ++ A D+D A+ Q+ Sbjct: 7 HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66 Query: 77 TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y E+ + + F LQ + + GV DG+ +DLGVSS Q+D +RGFS++K Sbjct: 67 RLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ + ++A +VVN + DL RI GE+K + +IA I + R+ P +TT + Sbjct: 127 PLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQVREVKPIETTTE 186 Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ +I K+ +K + HPA + FQA+RI VN+E+ + ++ A + L G + V+ Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMEMLALDGRISVI 245 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F S +V IP + P + + +++K ++P+ E++ N RS Sbjct: 246 TFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKM-ELVSRKPILPSAEELEANNRSH 304 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 305 SAKLRVARK 313 >gi|194335059|ref|YP_002016919.1| S-adenosyl-methyltransferase MraW [Prosthecochloris aestuarii DSM 271] gi|262824884|sp|B4S6R7|RSMH_PROA2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|194312877|gb|ACF47272.1| S-adenosyl-methyltransferase MraW [Prosthecochloris aestuarii DSM 271] Length = 333 Score = 177 bits (448), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 118/318 (37%), Positives = 180/318 (56%), Gaps = 29/318 (9%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYS--------RSFCKMGSNVIALDRDPF 69 G H+PV++ +V LL PG + +D T G GG++ RS + S +I +D+D F Sbjct: 5 GYHLPVMVSEVTDLLARRPG-IYIDGTLGGGGHAFSVMSALRRSGFENDSLLIGIDQDSF 63 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KG----VDGVVFDLGVSSMQIDCG 121 A+ +R + + L + FS++ + +G V G++ DLGVSS QID Sbjct: 64 ALEEAAGRLRPFASRVRLERGNFSEMAAIIERIRLREGCRLPVMGILLDLGVSSFQIDTP 123 Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR- 179 DRGFS+ + GPLDMRM G SA+D+VN A +L I+ GEEK++ IA AI R Sbjct: 124 DRGFSYLRQGPLDMRMDPDGGWSAADIVNTAEESELAGIIYRYGEEKKSRAIARAIKARV 183 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 R+ F+ T +L++++ ++V + +I +R FQALRI VN+E+ L L L Sbjct: 184 REKGDFRETAELAAVV-RSVVAGHDRQIKSLSRVFQALRIAVNDELGVLESALEDGTACL 242 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSG-----KVMAVRHMIPSNAHPAVFQSITKKVVV 294 G + V+S+HSLEDR+VK+FF +S K + +R + S A F+ +T+K VV Sbjct: 243 APSGRMGVMSYHSLEDRMVKRFFRDKSEDDWGPKGVGLREPLRS----AGFKLVTRKSVV 298 Query: 295 PTQEDVAFNRRSRSAKLR 312 + ++V N R+RSA+LR Sbjct: 299 ASDDEVRINPRARSARLR 316 >gi|319938119|ref|ZP_08012517.1| S-adenosyl-methyltransferase mraW [Coprobacillus sp. 29_1] gi|319806640|gb|EFW03289.1| S-adenosyl-methyltransferase mraW [Coprobacillus sp. 29_1] Length = 315 Score = 177 bits (448), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 107/310 (34%), Positives = 169/310 (54%), Gaps = 10/310 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQE 76 +H+ VLLE+ I LN + +D T G GG+S+ K ++ D+D A+ + Sbjct: 3 NHISVLLEETIEGLNIKEDGIYVDCTLGGGGHSQEILKRLTTGHLYCFDQDQVAIEVAAK 62 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + F++ + F ++ + GV DG+VFDLGVSS Q D G+RGFS+ L Sbjct: 63 RLSQISDHFTIIYSNFKNMKSELNQLGVQKVDGIVFDLGVSSPQFDDGERGFSYNYDAKL 122 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM +SA ++VN +L +I +EK + +IA AI + RQ P +TT +L Sbjct: 123 DMRMDRNQTLSAYEIVNTYEFNELVKIFYKYADEKFSKQIARAIERHRQEKPIETTFELV 182 Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I++ + ++ HPA R+FQALRI VN+E+ + L + + GG + V++FH Sbjct: 183 EIIKEAIPAPARRKGGHPAKRTFQALRIAVNDELSVFEKALDDSLDCICVGGRIAVITFH 242 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLED++ K F ++ ++ ++P P FQ ITKK +V ++++ N RS SA Sbjct: 243 SLEDKICKYTFNEVTKQPQLPMGMPIVPEYLKPR-FQKITKKPIVAGEKELEENHRSHSA 301 Query: 310 KLRAGMRTVE 319 KLR R E Sbjct: 302 KLRIIERVYE 311 >gi|240116316|ref|ZP_04730378.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae PID18] gi|240118603|ref|ZP_04732665.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae PID1] gi|240128816|ref|ZP_04741477.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae SK-93-1035] Length = 306 Score = 176 bits (447), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 112/292 (38%), Positives = 166/292 (56%), Gaps = 20/292 (6%) Query: 39 VILDATFGAGGYSR-SFCKMG--SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95 V +D TFG GG+SR ++G +I D+DP A++ +E R K + + F+ Sbjct: 16 VYVDGTFGRGGHSRLILSRLGDAGRLIVFDKDPQAIAVAEELARSDK-RVGVVHGGFASF 74 Query: 96 QDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQA 151 Q + G VDG +FDLG+SS QID G RGFSF+ PLDMRM + G+SA++ + A Sbjct: 75 QTALDGLGIGKVDGALFDLGISSPQIDDGSRGFSFRFDAPLDMRMDTTRGMSAAEWIAVA 134 Query: 152 NVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPAT 211 + +DL ++ GEE+ + +I AIV +R +P TT+ L+ ++ + V + + PAT Sbjct: 135 SEQDLHEVIKNYGEERFSRQIVRAIVAQRAESPIDTTRKLAQIVAQNVRTRERGQ-DPAT 193 Query: 212 RSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMA 271 R+FQA+RIF+N E+EE+ L LK GG L V++FHSLEDR+VK+F K + Sbjct: 194 RTFQAIRIFINRELEEVGAVLPQVMCRLKEGGRLAVIAFHSLEDRIVKQFV-----KKYS 248 Query: 272 VRHMIPSNAH------PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 +PS A P I + + P + ++A N R+RSA LR RT Sbjct: 249 QHEPLPSWAAVREADLPDPPLKIVGRALKPGEAEIAANPRARSAVLRVAERT 300 >gi|300361452|ref|ZP_07057629.1| S-adenosyl-methyltransferase MraW [Lactobacillus gasseri JV-V03] gi|300354071|gb|EFJ69942.1| S-adenosyl-methyltransferase MraW [Lactobacillus gasseri JV-V03] Length = 315 Score = 176 bits (447), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 112/311 (36%), Positives = 179/311 (57%), Gaps = 15/311 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMG-SNVIALDRDPFAVSCGQET 77 H VLL + I LNP + +DATFG GG++R K+ VI D+D +A+S +E+ Sbjct: 5 HKSVLLHETIDNLNPKDDGLYVDATFGGGGHARYLLSKLNRGTVIGFDQDEYAISMAKES 64 Query: 78 MRDY-----KEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + + + L F L+ + + G+DG+ +DLGVSS Q D +RGFS++ Sbjct: 65 FAEELKPGAEPKLILVHDNFCHLKKNLVELGISDGIDGIYYDLGVSSPQFDQPERGFSYR 124 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 LDMRM S + A +VN + K+L+ IL G+EK + +IA IV RR+ P T Sbjct: 125 FDARLDMRMDQSQELDAYTIVNTWSQKELSDILYKYGDEKFSRQIARKIVDRRREKPIVT 184 Query: 188 TQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T DL +I+ + +++ + HPA +SFQA+R+ VNNE+ L + L A K L+ GG + Sbjct: 185 TFDLVDVIKDAIPAYARRSGGHPAKKSFQAIRVAVNNELGVLQESLEEAIKLLRPGGRIS 244 Query: 247 VVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V++F S ED++VKK F S ++ M+P+++ P + + I++K ++ + +++ N R Sbjct: 245 VITFQSHEDKIVKKIFKKYSEVEIPRGMPMVPADSKPTL-RLISRKPIMASSDELEENNR 303 Query: 306 SRSAKLRAGMR 316 S SAKLR + Sbjct: 304 SHSAKLRVAEK 314 >gi|53726017|ref|YP_104102.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei ATCC 23344] gi|67643637|ref|ZP_00442382.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei GB8 horse 4] gi|121598510|ref|YP_991829.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei SAVP1] gi|124386348|ref|YP_001027322.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei NCTC 10229] gi|126438415|ref|YP_001060543.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 668] gi|126449153|ref|YP_001082741.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei NCTC 10247] gi|162210064|ref|YP_334923.2| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 1710b] gi|166998645|ref|ZP_02264503.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei PRL-20] gi|167721351|ref|ZP_02404587.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei DM98] gi|254179030|ref|ZP_04885684.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei ATCC 10399] gi|254202823|ref|ZP_04909186.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei FMH] gi|254208165|ref|ZP_04914515.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei JHU] gi|254259496|ref|ZP_04950550.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 1710a] gi|254357631|ref|ZP_04973905.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei 2002721280] gi|88909189|sp|Q3JND0|RSMH_BURP1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|115311581|sp|Q62GR9|RSMH_BURMA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446914|sp|A3MR55|RSMH_BURM7 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446917|sp|A2S5V3|RSMH_BURM9 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446920|sp|A1V0S6|RSMH_BURMS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446928|sp|A3NDX2|RSMH_BURP6 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|52429440|gb|AAU50033.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei ATCC 23344] gi|121227320|gb|ABM49838.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei SAVP1] gi|124294368|gb|ABN03637.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei NCTC 10229] gi|126217908|gb|ABN81414.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 668] gi|126242023|gb|ABO05116.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei NCTC 10247] gi|147747070|gb|EDK54147.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei FMH] gi|147752059|gb|EDK59126.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei JHU] gi|148026695|gb|EDK84780.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei 2002721280] gi|160694944|gb|EDP84952.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei ATCC 10399] gi|238525016|gb|EEP88446.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei GB8 horse 4] gi|243065324|gb|EES47510.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei PRL-20] gi|254218185|gb|EET07569.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 1710a] Length = 313 Score = 176 bits (447), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 119/312 (38%), Positives = 182/312 (58%), Gaps = 21/312 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMG--SNVIALDRDPFAVSCGQE 76 H VLL++ + L P V +D TFG GG+SR+ ++G +IA D+DP A+ E Sbjct: 7 HRTVLLDEAVDALVTRPDGVYVDGTFGRGGHSRAVLARLGDAGRLIAFDKDPRAIETA-E 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ D + F + +F+ ++ + +GV GV+ DLGVSS Q+D RGFSF+ +GPL Sbjct: 66 SIEDAR--FEIVHDSFAAMKGALDARGVGRVSGVLLDLGVSSPQVDDPARGFSFRANGPL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTT 188 DMRM + G SA++ + +A+V++LT ++ GEE+ A +IA AIV RR + P +T Sbjct: 124 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRLGPLDST 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ ++ V + + PATR+FQA+RI VN E+ +L L +A L+ GG L+V+ Sbjct: 184 GELAQIVGHVVKTREKGK-DPATRTFQAIRIHVNQELADLQVVLEAALSLLEQGGRLVVI 242 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNRR 305 SFHSLEDR+VK+F + + AV +P A A K++ P +VA N R Sbjct: 243 SFHSLEDRIVKRFLQAHA-SAPAVDRRLPIRA--ADLPRPPLKLLGRMFPNDAEVAANPR 299 Query: 306 SRSAKLRAGMRT 317 +RSA +R R Sbjct: 300 ARSAVMRIAERV 311 >gi|281421043|ref|ZP_06252042.1| S-adenosyl-methyltransferase MraW [Prevotella copri DSM 18205] gi|281404961|gb|EFB35641.1| S-adenosyl-methyltransferase MraW [Prevotella copri DSM 18205] Length = 304 Score = 176 bits (447), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 115/300 (38%), Positives = 168/300 (56%), Gaps = 16/300 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76 HVPVLL++ + LN PG + +D TFG GG+SR S G+++ + D+D A E Sbjct: 9 HVPVLLKESVDGLNIQPGGIYVDVTFGGGGHSREILSRLTEGAHLYSFDQDADA-----E 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQKSGPL 133 E F+ + F L++++ GVDG+ + DLGVSS D RGFSF+ PL Sbjct: 64 RNVVANENFTFVCSNFRFLKNWMRYYGVDGLDGLLADLGVSSHHFDDETRGFSFRFDSPL 123 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +G +A+D+VN+ + L I + GE K + RIA A+VK R P TT+D Sbjct: 124 DMRMNKRAGKTAADIVNEYDEGALADIFYLYGELKNSRRIASALVKARAEKPILTTKDFM 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 + ++ F + + FQALRI VN+E++ L + LRSA LK GG L V+++HS Sbjct: 184 AAVEPL--FKREREKKDMAKLFQALRIEVNHEMDALKEMLRSATALLKPGGRLSVITYHS 241 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK + + + + P F+ + KV+VP ++ N RSRSAKLR Sbjct: 242 LEDRIVKNMMKAGNAEGKIEQDFFGRIETP--FKLVNNKVIVPDADEQERNPRSRSAKLR 299 >gi|126695529|ref|YP_001090415.1| S-adenosylmethionine-dependent methyltransferase [Prochlorococcus marinus str. MIT 9301] gi|262824906|sp|A3PAN9|RSMH_PROM0 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|126542572|gb|ABO16814.1| Predicted S-adenosylmethionine-dependent methyltransferase [Prochlorococcus marinus str. MIT 9301] Length = 300 Score = 176 bits (447), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 113/310 (36%), Positives = 174/310 (56%), Gaps = 42/310 (13%) Query: 19 DHVPVLLEKVIALLNPAPGKVI-------LDATFGAGGYSRSFCKMGS--NVIALDRDPF 69 +H V+ ++++A L P +I +DAT G GG+S + S N+I LD+DPF Sbjct: 12 NHKSVMTDEIMASLEHYP--LIHNNQLKGIDATLGGGGHSYHLLRKYSDLNIIGLDQDPF 69 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 A + + ++K + + + F+ D+VP + V V+ DLGV+S Q+D RGFSFQK Sbjct: 70 ARKSALKKLDEFKSRIDIRASNFA---DFVPKEKVSFVIADLGVNSNQLDDPKRGFSFQK 126 Query: 130 SGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI-VKRRQSAPFQT 187 GPLDMRM+ + A ++ N KDL ++ G+E+ + +IA I + +++ + Sbjct: 127 DGPLDMRMNPLLDVDAEKLIEVLNEKDLANLIYKYGDERLSRKIARKIKLDLKENGKYSG 186 Query: 188 TQDLSSLIQ-----KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 T++L+ I K Y +IHPATR+FQALRI VN EIE L + L+ + L G Sbjct: 187 TKELAYSIAGCFPPKQRY----KKIHPATRTFQALRIAVNKEIEVLEKFLQVVPEWLLPG 242 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G++ V+SFHSLEDRLVK F + +++TKK + P++E+V Sbjct: 243 GIISVISFHSLEDRLVKSCFKNDQR-----------------LKNLTKKPITPSEEEVEL 285 Query: 303 NRRSRSAKLR 312 N+R+RS KLR Sbjct: 286 NKRARSGKLR 295 >gi|317402444|gb|EFV83013.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Achromobacter xylosoxidans C54] Length = 365 Score = 176 bits (447), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 123/330 (37%), Positives = 180/330 (54%), Gaps = 35/330 (10%) Query: 19 DHVPVLLEKVI-ALL----------------NPAPGK-----VILDATFGAGGYSRSFC- 55 +H PVLLE + ALL PA V +D TFG GG+SR Sbjct: 4 EHRPVLLEPTVDALLLADFGGKGAARSQPGDEPAAATRAERGVFVDGTFGRGGHSRELLG 63 Query: 56 KMG--SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFD 110 ++G + ++ D+DP + + ++ F+ + + + G VDGV+ D Sbjct: 64 RLGPTARLVVFDKDP-EAIAVANALAAADSRVTVVHGGFATMAEELRQLGIDKVDGVMLD 122 Query: 111 LGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQA 169 LGVSS QID +RGFSF + GPLDMRM + G + +D + QA+V ++ ++ GEE+ A Sbjct: 123 LGVSSPQIDDAERGFSFMRDGPLDMRMDTTRGPTVADWLAQASVDEMREVIADYGEERFA 182 Query: 170 SRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELA 229 ++A AI RR + P +TT +L+ + V + + HPATR+FQALRI++N E+EELA Sbjct: 183 FQVAKAIAARRATRPLRTTLELAECVASAVRTREKGQ-HPATRTFQALRIYINRELEELA 241 Query: 230 QGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQS 287 + L SA L GG L V+SFHSLEDR+VK+ A+ + A + S V +S Sbjct: 242 RTLASALDLLAPGGRLAVISFHSLEDRMVKQCIAAAARPAAAHARLPLRESEMPQPVLRS 301 Query: 288 ITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 + + V+ E+VA N R+RSA LR RT Sbjct: 302 LGR--VLAEDEEVAANARARSAVLRVAERT 329 >gi|306830125|ref|ZP_07463309.1| S-adenosyl-methyltransferase MraW [Streptococcus mitis ATCC 6249] gi|304427651|gb|EFM30747.1| S-adenosyl-methyltransferase MraW [Streptococcus mitis ATCC 6249] Length = 316 Score = 176 bits (447), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 111/309 (35%), Positives = 176/309 (56%), Gaps = 14/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 HV VLL + I +L+ P + +DAT G G+S S ++ A D+D A+ Q+ Sbjct: 7 HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66 Query: 77 TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y E+ + + F LQ + + GV DG+ +DLGVSS Q+D +RGFS++K Sbjct: 67 RLAPYIEKGMVTFIKDNFRHLQARLLEAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ + ++A +VVN + DL RI GE+K + +IA I + R+ P +TT + Sbjct: 127 PLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186 Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ +I K+ +K + HPA + FQA+RI VN+E+ + ++ A L G + V+ Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVI 245 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F S +V IP + P + + +++K ++P+ E++ N RS Sbjct: 246 TFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKM-ELVSRKPILPSAEELEANNRSH 304 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 305 SAKLRVARK 313 >gi|301793586|emb|CBW35963.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae INV104] gi|332204336|gb|EGJ18401.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae GA47901] Length = 316 Score = 176 bits (447), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 112/309 (36%), Positives = 175/309 (56%), Gaps = 14/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 HV VLL + I +L+ P + +DAT G G+S S ++ A D+D A+ Q+ Sbjct: 7 HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66 Query: 77 TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y E+ + + F LQ + + GV DG+ +DLGVSS Q+D +RGFS++K Sbjct: 67 RLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ + ++A +VVN + DL RI GE+K + +IA I + R+ P +TT + Sbjct: 127 PLDMRMNQDASLTAYEVVNNYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186 Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ +I K V +K + HPA + FQA+RI VN+E+ + + A L G + V+ Sbjct: 187 LAEII-KLVKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIHQAMDMLALDGRISVI 245 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F S +V IP + P + + +++K ++P+ E++ N RS Sbjct: 246 TFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKM-ELVSRKPILPSAEELEANNRSH 304 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 305 SAKLRVARK 313 >gi|15900265|ref|NP_344869.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae TIGR4] gi|111657194|ref|ZP_01407969.1| hypothetical protein SpneT_02001591 [Streptococcus pneumoniae TIGR4] gi|262827209|sp|P0CB58|RSMH_STRPN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|14971807|gb|AAK74509.1| yllC protein [Streptococcus pneumoniae TIGR4] Length = 316 Score = 176 bits (447), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 112/305 (36%), Positives = 175/305 (57%), Gaps = 14/305 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 HV VLL + I +L+ P + +DAT G G+S S ++ A D+D A+ Q+ Sbjct: 7 HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66 Query: 77 TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y E+ + + F LQ + + GV DG+ +DLGVSS Q+D +RGFS++K Sbjct: 67 RLAPYIEKGMVTFIKDNFRHLQACLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ + ++A +VVN + DL RI GE+K + +IA I + R+ P +TT + Sbjct: 127 PLDMRMNQDASLTAYEVVNNYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186 Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ +I K V +K + HPA + FQA+RI VN+E+ + ++ A L G + V+ Sbjct: 187 LAEII-KLVKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVI 245 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F S +V IP + P + + +++K ++P+ E++ N RS Sbjct: 246 TFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKM-ELVSRKPILPSAEELEANNRSH 304 Query: 308 SAKLR 312 SAKLR Sbjct: 305 SAKLR 309 >gi|300933362|ref|ZP_07148618.1| S-adenosyl-methyltransferase MraW [Corynebacterium resistens DSM 45100] Length = 348 Score = 176 bits (447), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 110/326 (33%), Positives = 179/326 (54%), Gaps = 26/326 (7%) Query: 20 HVPVLLEKVIALL------NPAPG-KVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70 HVPV+ ++++ L+ + AP VI+D T GAGG+S +F S+ VI LDRDP A Sbjct: 17 HVPVMCDRMVELVGVGVTSDNAPSVPVIIDGTLGAGGHSEAFLSSFSDAIVIGLDRDPHA 76 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPD-------------KGVDGVVFDLGVSSMQ 117 + E + + ++F ++ F + + + D G+ + FDLGVSSMQ Sbjct: 77 LEEATERLAPFGDRFVPYRTRFDGITEAIEDLIALDRIPAEVRETGLSALFFDLGVSSMQ 136 Query: 118 IDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 +D +RGF+++ PLDMRM ++A++++N + DL RIL G+E+ A +IA A+ Sbjct: 137 LDQAERGFAYRVDAPLDMRMDPRLSLTAAEILNTYSHGDLARILKTYGDERFAGKIASAV 196 Query: 177 VKRRQSAPFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 ++ R+ PF T+ L L+ T+ ++ HPA R+FQALRI VN E+E L L A Sbjct: 197 LREREKEPFTTSARLVELLYATIPAATRRTGGHPAKRTFQALRIEVNAELEALENVLPLA 256 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFAS-RSGKVMAVRHMIPSNAHPAVFQSITKKVVV 294 GG+ + +S+ SLED++VK F+ + + A M P F+ IT++ Sbjct: 257 ASWTHVGGVNVYMSYQSLEDKIVKSAFSDLTTSQTPAGLPMELPGTEPE-FEMITRRAEK 315 Query: 295 PTQEDVAFNRRSRSAKLRAGMRTVER 320 T++++ N R+ ++RA R +R Sbjct: 316 ATEKEIEENSRAAPVRVRAARRVSDR 341 >gi|217425690|ref|ZP_03457180.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 576] gi|217391278|gb|EEC31310.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 576] Length = 313 Score = 176 bits (447), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 119/312 (38%), Positives = 182/312 (58%), Gaps = 21/312 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMG--SNVIALDRDPFAVSCGQE 76 H VLL++ + L P V +D TFG GG+SR+ ++G +IA D+DP A+ E Sbjct: 7 HRTVLLDEAVDALVTRPDGVYVDGTFGRGGHSRAVLARLGDAGRLIAFDKDPRAIETA-E 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ D + F + +F+ ++ + +G V GV+ DLGVSS Q+D RGFSF+ +GPL Sbjct: 66 SIEDAR--FEIVHDSFAAMKGALDARGIGRVSGVLLDLGVSSPQVDDPARGFSFRANGPL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTT 188 DMRM + G SA++ + +A+V++LT ++ GEE+ A +IA AIV RR + P +T Sbjct: 124 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRLGPLDST 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ ++ V + + PATR+FQA+RI VN E+ +L L +A L+ GG L+V+ Sbjct: 184 GELAQIVGHVVKTREKGK-DPATRTFQAIRIHVNQELADLQVVLEAALSLLEQGGRLVVI 242 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNRR 305 SFHSLEDR+VK+F + + AV +P A A K++ P +VA N R Sbjct: 243 SFHSLEDRIVKRFLQAHA-SAPAVDRRLPIRA--ADLPRPPLKLLGRMFPNDAEVAANPR 299 Query: 306 SRSAKLRAGMRT 317 +RSA +R R Sbjct: 300 ARSAVMRIAERV 311 >gi|152980341|ref|YP_001354713.1| S-adenosyl-methyltransferase MraW [Janthinobacterium sp. Marseille] gi|263456176|sp|A6T2G6|RSMH_JANMA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|151280418|gb|ABR88828.1| S-adenosyl-methyltransferase [Janthinobacterium sp. Marseille] Length = 322 Score = 176 bits (447), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 113/308 (36%), Positives = 179/308 (58%), Gaps = 16/308 (5%) Query: 20 HVPVLLEKVI---ALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73 H VLL++ + AL V +D TFG GG+SR + G+ ++A D+D A++ Sbjct: 11 HRTVLLDEAVDALALGGERANGVYVDGTFGRGGHSRKILQQLGSGARLLAFDKDTQAIAN 70 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 T+ D ++F + +F+ L + + +G VDGV+ DLG+SS Q+D RGFSF+ Sbjct: 71 AA-TIDD--QRFEIAHDSFATLSEALAVRGIKQVDGVLLDLGISSPQVDDATRGFSFRAD 127 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 GPLDMRM + G+SA++ + + + +++ GEE+ A +IA AIV RR P +T+ Sbjct: 128 GPLDMRMDTTRGMSAAEWLATETEQKIEKVIREYGEERFAFQIAKAIVARRAVEPISSTR 187 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ ++ +TV + + PATR+FQA+RIF+N E+EEL L A + L G L+V+S Sbjct: 188 QLAEIVARTVKTREKGK-DPATRTFQAIRIFINQELEELEVVLNEAYRYLAPHGRLVVIS 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK+F A ++ R + I + P + + V P+ +++ N R+RS Sbjct: 247 FHSLEDRIVKQFMAGKANVPQPDRRLPIRAIDLPQPEMKLLSR-VKPSAAEISENPRARS 305 Query: 309 AKLRAGMR 316 A +R R Sbjct: 306 AVMRVAER 313 >gi|288801599|ref|ZP_06407041.1| S-adenosyl-methyltransferase MraW [Prevotella melaninogenica D18] gi|288335641|gb|EFC74074.1| S-adenosyl-methyltransferase MraW [Prevotella melaninogenica D18] Length = 314 Score = 176 bits (447), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 115/303 (37%), Positives = 174/303 (57%), Gaps = 15/303 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76 H+PVLL + I LN V +D TFG GG+SR S GS++ + D+D A + Sbjct: 9 HIPVLLNESIEGLNLHANGVYVDVTFGGGGHSREILSRLAEGSHLYSFDQDADA-EQNID 67 Query: 77 TMRDYKEQ---FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130 M +EQ F+ ++ F L++++ GV DG++ DLGVSS D RGFSF+ Sbjct: 68 NMGLSEEQVDRFTFVRSNFRYLKNWMQYYGVEYIDGLLADLGVSSHHFDDETRGFSFRFE 127 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM+ +GI+A+D++N + + L IL + GE KQ+ RIA AIVK R ++TT Sbjct: 128 APLDMRMNKRAGITAADILNDYDEERLADILYLYGELKQSRRIASAIVKARGQKTYKTTN 187 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 DL + I+ +++ + + FQALRI VN+E++ L + L +A + L+ GG L V++ Sbjct: 188 DLLTTIEPFFQWAREKK--DMAKMFQALRIEVNHEMDALKEMLMAATELLRPGGRLSVIT 245 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 +HSLEDR+VK S + + + P F+ + KV+ + ++ N RSRSA Sbjct: 246 YHSLEDRMVKNIMKSGNIEGKVKQDFFGRTETP--FRLVNNKVITASNDEQERNPRSRSA 303 Query: 310 KLR 312 KLR Sbjct: 304 KLR 306 >gi|53720643|ref|YP_109629.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei K96243] gi|167817538|ref|ZP_02449218.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 91] gi|115311582|sp|Q63QI9|RSMH_BURPS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|52211057|emb|CAH37045.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei K96243] Length = 313 Score = 176 bits (447), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 119/312 (38%), Positives = 182/312 (58%), Gaps = 21/312 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMG--SNVIALDRDPFAVSCGQE 76 H VLL++ + L P V +D TFG GG+SR+ ++G +IA D+DP A+ E Sbjct: 7 HRTVLLDEAVDALVTRPDGVYVDGTFGRGGHSRAVLARLGYAGRLIAFDKDPRAIETA-E 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ D + F + +F+ ++ + +G V GV+ DLGVSS Q+D RGFSF+ +GPL Sbjct: 66 SIEDAR--FEIVHDSFAAMKGALDARGIGRVSGVLLDLGVSSPQVDDPARGFSFRANGPL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTT 188 DMRM + G SA++ + +A+V++LT ++ GEE+ A +IA AIV RR + P +T Sbjct: 124 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRLGPLDST 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ ++ V + + PATR+FQA+RI VN E+ +L L +A L+ GG L+V+ Sbjct: 184 GELAQIVGHVVKTREKGK-DPATRTFQAIRIHVNQELADLQVVLEAALSLLEQGGRLVVI 242 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNRR 305 SFHSLEDR+VK+F + + AV +P A A K++ P +VA N R Sbjct: 243 SFHSLEDRIVKRFLQAHA-SAPAVDRRLPIRA--ADLPRPPLKLLGRMFPNDAEVAANPR 299 Query: 306 SRSAKLRAGMRT 317 +RSA +R R Sbjct: 300 ARSAVMRIAERV 311 >gi|50086346|ref|YP_047856.1| S-adenosyl-methyltransferase MraW [Acinetobacter sp. ADP1] gi|54036183|sp|Q6F7D1|RSMH_ACIAD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|49532322|emb|CAG70034.1| S-adenosylmethionine methyltransferase [Acinetobacter sp. ADP1] Length = 303 Score = 176 bits (447), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 122/318 (38%), Positives = 177/318 (55%), Gaps = 36/318 (11%) Query: 20 HVPVLL-EKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCG- 74 H+ VLL E V ALL + +D TFG GG++R K+GS+ V D+DP A++ Sbjct: 3 HISVLLHETVDALLANRDTGIYIDGTFGRGGHTRLLLSKLGSDAQVYGFDKDPQALAVAH 62 Query: 75 ---QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQ 128 QE +R F + A+F+ +Q + +G V+GV+ DLGVSS Q+D +RGFSF Sbjct: 63 QLEQEDLR-----FKIIHASFADIQTELEQRGITQVEGVMADLGVSSPQLDQAERGFSFM 117 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM S G +A++ + + L I+ GEE+ + RIA AI +Q+ +T Sbjct: 118 QDGPLDMRMDNSQGKTAAEWLLSIEEEALANIIYQYGEERYSRRIARAI---KQAGALET 174 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T L+ L+ KT + HPATR+FQA+RI +N E+E++ L A LK G L V Sbjct: 175 TAQLAELV-KTAHPKWEKHKHPATRTFQAIRIAINKELEDIEIFLPQAVTLLKPEGRLAV 233 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT-----KKV--VVPTQEDV 300 ++FHSLEDRL+K+F S +P ++ + Q KK+ + ++E+V Sbjct: 234 ITFHSLEDRLIKQFIQKES--------TLPEDSGWGLPQKQVDSRRLKKISRIRASEEEV 285 Query: 301 AFNRRSRSAKLRAGMRTV 318 N RSRSA LR R V Sbjct: 286 KANPRSRSAWLRVAERLV 303 >gi|315655245|ref|ZP_07908146.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Mobiluncus curtisii ATCC 51333] gi|315490500|gb|EFU80124.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Mobiluncus curtisii ATCC 51333] Length = 378 Score = 176 bits (447), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 118/336 (35%), Positives = 182/336 (54%), Gaps = 36/336 (10%) Query: 20 HVPVLLEKVIALLNPA--------------------PGKVILDATFGAGGYSRSFCKMGS 59 H PVL E LL PA G V++DAT G GG+S + Sbjct: 8 HQPVLAEVCADLLAPALTPASESVNPLSSTADFHNVQGPVLVDATLGMGGHSAYLLERHP 67 Query: 60 N--VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVS 114 +I +DRDP A + D+ + S+ T+ +L D + G VDG++ DLGVS Sbjct: 68 QLRIIGIDRDPQARDLAASRLSDFANRLSIVGTTYGELDDVLAQHGLRQVDGILADLGVS 127 Query: 115 SMQIDCGDRGFSF-QKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRI 172 S+Q+D +RGF++ PLDMRM+ SG +A+D +N A +++ +L GEEK + + Sbjct: 128 SLQLDEAERGFAYAHPEAPLDMRMNQSSGFTAADFLNLAQAEEIAAVLHTYGEEKFSWPL 187 Query: 173 AHAIVKRRQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQG 231 A AIVK RQ+ P Q + L +I+ T+ ++ +PA R+FQALR+ VN+E+ +L + Sbjct: 188 AKAIVKARQNQPLQVSGQLVQIIRDTIPAPARRTGGNPAKRTFQALRVAVNDELGDLERF 247 Query: 232 LRSAEKALKAGGLLIVVSFHSLEDRLVKKFFAS----RSGKVMAVRHMIPSNAHPAVFQS 287 L A +++ GG ++V S+ SLEDRLVK+ FA+ + K + V +P A P + Sbjct: 248 LTKALASVRVGGRIVVESYQSLEDRLVKRAFAAGIHPAAPKGLPV---LPEQAQP-WLRD 303 Query: 288 ITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIE 323 +T + + +VA N R+ S +LRA ++T E E Sbjct: 304 LTHGSRLADESEVAQNPRAASLRLRAVVKTREPHPE 339 >gi|330444381|ref|YP_004377367.1| S-adenosyl-methyltransferase MraW [Chlamydophila pecorum E58] gi|328807491|gb|AEB41664.1| S-adenosyl-methyltransferase MraW [Chlamydophila pecorum E58] Length = 296 Score = 176 bits (447), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 112/300 (37%), Positives = 168/300 (56%), Gaps = 20/300 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI---ALDRDPFAVSCGQE 76 H+PVL+ + ++L + + + D T GAGG++++F ++ A DRDP A++ + Sbjct: 5 HIPVLVHECLSLFSQSTPRKFCDVTVGAGGHAKAFLTAYPSITSYDASDRDPLALTLSSQ 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ-KSGPLDM 135 + +KE+ L A+F L + + DGV+ DLGVSSMQ+D RGFSFQ + LDM Sbjct: 65 ALEPFKERVHLRHASFQDLSHSLEEHVYDGVIADLGVSSMQLDDLSRGFSFQGEEHYLDM 124 Query: 136 RMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM GISAS+V+ ++L +I GEE + A AIV R+ +T +DL Sbjct: 125 RMDPTQGISASEVLQCLREEELGKIFREYGEEPLWRQAAKAIVHFRKHKRIETVRDLKEA 184 Query: 195 IQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 + + +IHP T FQALR+FVN E ++L L SA + L G ++++SF S Sbjct: 185 TSRVFPSYRLRKKIHPLTLIFQALRVFVNGEDQQLRTLLESAMRWLAPQGRVVIISFCSS 244 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 EDR VK+FF RH + + + +TKKV++PT +++ N RSRSAKLR Sbjct: 245 EDRPVKQFF----------RHAEATG----LGRVVTKKVIMPTFQEIRRNPRSRSAKLRC 290 >gi|303240801|ref|ZP_07327314.1| S-adenosyl-methyltransferase MraW [Acetivibrio cellulolyticus CD2] gi|302591689|gb|EFL61424.1| S-adenosyl-methyltransferase MraW [Acetivibrio cellulolyticus CD2] Length = 313 Score = 176 bits (447), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 113/315 (35%), Positives = 175/315 (55%), Gaps = 31/315 (9%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQ 75 +H PVL E+ I L+ P V +D T G G+S + + K+G +I LD+D FA+ + Sbjct: 4 EHKPVLFEECIENLDIKPDGVYVDGTLGGAGHSSAIYQKLGEKGMLIGLDQDGFALETSK 63 Query: 76 ETMRDYKEQFSLFQAT--FSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + D + SL A F ++ + VDG++ DLGVSS Q+D +RGFS+ K Sbjct: 64 KRLEDQNGKGSLIFANTNFVNIKSVCFENKIACVDGILLDLGVSSHQLDEAERGFSYNKD 123 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM +A +VN+ + +++ +I+ GEE ASRIA IV+RR +TT Sbjct: 124 APLDMRMDRRQKFTAETIVNEYSKEEIKKIIREFGEENWASRIAEFIVQRRDEKRIETTG 183 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I+ + S + HPA R+FQALRI VN+E+ L++ + LK GG ++ Sbjct: 184 ELVEIIKAAIPSSARREGPHPAKRTFQALRIAVNDELGILSKAIEEGVNLLKPGGRFCII 243 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF-----------QSITKKVVVPTQ 297 +FHSLEDR+VK F +++ P P+ F +S+ +K +VP+ Sbjct: 244 TFHSLEDRIVKNEFN---------KYINPCTC-PSTFPVCVCGKKKLAESVHRKPIVPSV 293 Query: 298 EDVAFNRRSRSAKLR 312 +++ N R+RSAKLR Sbjct: 294 KELEENPRARSAKLR 308 >gi|237738334|ref|ZP_04568815.1| S-adenosyl-methyltransferase mraW [Fusobacterium mortiferum ATCC 9817] gi|229420214|gb|EEO35261.1| S-adenosyl-methyltransferase mraW [Fusobacterium mortiferum ATCC 9817] Length = 313 Score = 176 bits (447), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 113/310 (36%), Positives = 174/310 (56%), Gaps = 20/310 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+PVL + I L V LD T G GG+S K S+ +I++D+D A+ ++ Sbjct: 9 HIPVLYRECIDNLVINKDGVYLDCTLGGGGHSEGILKELSDKGHLISIDQDQQAIDFAKK 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + Y +++ +F+ F L + G VDG++ D+GVSS Q+D +RGFS++ L Sbjct: 69 RLEKYGKKWQVFKNNFENLDMVLYMAGYDKVDGILMDIGVSSTQLDDPERGFSYRYDTRL 128 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ S +SA +VVN+ + L +I+ GEE+ A +IA I + R +TT +L Sbjct: 129 DMRMNRSNPLSAYEVVNEYPEEKLAKIIFEYGEERNARKIAKFICEARTEKNIETTGELV 188 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++I++ + + + HPA ++FQA+RI VN E+E L + + A +LK GG L +++FHS Sbjct: 189 AIIKRA--YPERAQKHPAKKTFQAIRIEVNRELEVLEKAIDKAVDSLKVGGRLGIITFHS 246 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSN------AHPAVFQSITKKVVVPTQEDVAFNRRS 306 LEDRLVK F K +A P A + IT+K +VP E+V FN R+ Sbjct: 247 LEDRLVKTKF-----KDLATACKCPPGLPICVCGGKAKVKLITRKPIVPEGEEVEFNNRA 301 Query: 307 RSAKLRAGMR 316 S+KLR R Sbjct: 302 HSSKLRVVER 311 >gi|169832477|ref|YP_001693854.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae Hungary19A-6] gi|262826832|sp|B1I953|RSMH_STRPI RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|168994979|gb|ACA35591.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae Hungary19A-6] Length = 316 Score = 176 bits (446), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 110/309 (35%), Positives = 176/309 (56%), Gaps = 14/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 HV VLL + I +L+ P + +DAT G G+S S ++ A D+D A+ Q+ Sbjct: 7 HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66 Query: 77 TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y E+ + + F LQ + + GV DG+ +DLGVSS Q+D +RGFS++K Sbjct: 67 RLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ + ++A +VVN + DL RI GE+K + +IA I + R+ P +TT + Sbjct: 127 PLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQEREVKPIETTTE 186 Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ +I K+ +K + HPA + FQ++RI VN+E+ + ++ A L G + V+ Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQSIRIEVNDELGAADESIQQAMDMLALDGRISVI 245 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F S +V IP + P + + +++K ++P+ E++ N RS Sbjct: 246 TFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKM-ELVSRKPILPSAEELEANNRSH 304 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 305 SAKLRVARK 313 >gi|254299374|ref|ZP_04966824.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 406e] gi|157808911|gb|EDO86081.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 406e] Length = 319 Score = 176 bits (446), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 119/312 (38%), Positives = 182/312 (58%), Gaps = 21/312 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMG--SNVIALDRDPFAVSCGQE 76 H VLL++ + L P V +D TFG GG+SR+ ++G +IA D+DP A+ E Sbjct: 13 HRTVLLDEAVDALVTRPDGVYVDGTFGRGGHSRAVLARLGDAGRLIAFDKDPRAIETA-E 71 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ D + F + +F+ ++ + +GV GV+ DLGVSS Q+D RGFSF+ +GPL Sbjct: 72 SIEDAR--FEIVHDSFAAMKGALDARGVGRVSGVLLDLGVSSPQVDDPARGFSFRANGPL 129 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTT 188 DMRM + G SA++ + +A+V++LT ++ GEE+ A +IA AIV RR + P +T Sbjct: 130 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRLGPLDST 189 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ ++ V + + PATR+FQA+RI VN E+ +L L +A L+ GG L+V+ Sbjct: 190 GELAQIVGHVVKTREKGK-DPATRTFQAIRIHVNQELADLQVVLEAALSLLEQGGRLVVI 248 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNRR 305 SFHSLEDR+VK+F + + AV +P A A K++ P +VA N R Sbjct: 249 SFHSLEDRIVKRFLQAHA-SAPAVDRRLPIRA--ADLPRPPLKLLGRMFPNDAEVAANPR 305 Query: 306 SRSAKLRAGMRT 317 +RSA +R R Sbjct: 306 ARSAVMRIAERV 317 >gi|124003786|ref|ZP_01688634.1| S-adenosyl-methyltransferase MraW [Microscilla marina ATCC 23134] gi|123990841|gb|EAY30308.1| S-adenosyl-methyltransferase MraW [Microscilla marina ATCC 23134] Length = 303 Score = 176 bits (446), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 114/300 (38%), Positives = 167/300 (55%), Gaps = 14/300 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H PV+L++ I L P V +D TFG GG+S++ + S + A D+D QE Sbjct: 5 HQPVMLKECIEGLAINPDGVYVDVTFGGGGHSKAILEQLSEKGKLYAFDQD---ADAKQE 61 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 F L +A F L+ Y+ GV DG++ DLG+SS QID +RGFS + L Sbjct: 62 AKEIDHPGFYLIRANFRYLKKYLKMYGVSKVDGILADLGISSHQIDTPERGFSTRFDAYL 121 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRMS S ++A DVVN+ + +L +ILG+ GE K A +A IV+ RQ A T ++L Sbjct: 122 DMRMSESIEVTAQDVVNEYSESELHKILGMYGELKNAKTVASTIVRARQDAAINTVEELK 181 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 S +++ + + + FQALRI VN EI+ L L A + LK G L+V+S+HS Sbjct: 182 SAVKR--HAPRGREFKFFAQVFQALRIEVNEEIQVLEVMLEQAAEVLKPQGRLVVMSYHS 239 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR VK + + A + M + P ++I +K++ +E++A N R+RSAKLR Sbjct: 240 LEDRPVKNYIQKGRFRGEAEKDMFGNVLKP--LRAINRKIITAQEEEIALNNRARSAKLR 297 >gi|229817311|ref|ZP_04447593.1| hypothetical protein BIFANG_02572 [Bifidobacterium angulatum DSM 20098] gi|229785100|gb|EEP21214.1| hypothetical protein BIFANG_02572 [Bifidobacterium angulatum DSM 20098] Length = 354 Score = 176 bits (446), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 112/308 (36%), Positives = 169/308 (54%), Gaps = 15/308 (4%) Query: 20 HVPVLLEKVIAL----LNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73 H PVLLE + L L+ +I+D T G G++ +F K + ++ +DRD A++ Sbjct: 12 HQPVLLEDCVRLVTGGLSRKQSPIIVDCTLGLAGHATAFLKAAPQARLVGIDRDAEALAL 71 Query: 74 GQETMR--DYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQ 128 E M+ ++F A F + + D G VD DLG+SS+QID +RGFS+ Sbjct: 72 ATERMKAEGLADRFIPVHAPFDEFTRALDDNGIHHVDAAFMDLGLSSLQIDETERGFSYS 131 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR-QSAPFQ 186 PLDMRM S ++A V+ + + +DL RI + GEE+ A IA IV RR Q P Sbjct: 132 HDAPLDMRMDVSQALTAEQVLAEYDERDLARIFKVYGEERFARPIARRIVARRTQEGPLT 191 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T+ +L+ L+ + + + +PA R FQALRI VN E+++LA L L GG ++ Sbjct: 192 TSAELNELVDEVIPKAHRPAGNPAKRVFQALRIEVNGELDKLAGTLPQIALKLNKGGRIV 251 Query: 247 VVSFHSLEDRLVKKFFA-SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V S+HSLED+ VK F + +V A ++P A P F+ +T+ V ++++A N R Sbjct: 252 VESYHSLEDKTVKSFMTQGLTARVPANMPIVPPEAMP-FFKELTRGAVKADEQEIASNPR 310 Query: 306 SRSAKLRA 313 S S +LRA Sbjct: 311 SASVRLRA 318 >gi|322375922|ref|ZP_08050433.1| S-adenosyl-methyltransferase MraW [Streptococcus sp. C300] gi|321279190|gb|EFX56232.1| S-adenosyl-methyltransferase MraW [Streptococcus sp. C300] Length = 316 Score = 176 bits (446), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 111/309 (35%), Positives = 175/309 (56%), Gaps = 14/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 HV VLL + I +L+ P +DAT G G+S S ++ A D+D A+ Q+ Sbjct: 7 HVTVLLHETIDMLDVKPDGTYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66 Query: 77 TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y E+ + + F LQ + + GV DG+ +DLGVSS Q+D +RGFS++K Sbjct: 67 RLAPYIEKGMVTFIKDNFRHLQARLQEAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ + ++A +VVN + DL RI GE+K + +IA I + R+ P +TT + Sbjct: 127 PLDMRMNQEASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186 Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ +I K+ +K + HPA + FQA+RI VN+E+ + ++ A L G + V+ Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVI 245 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F S +V IP + P + + +++K ++P+ E++ N RS Sbjct: 246 TFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKM-ELVSRKPILPSAEELEANNRSH 304 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 305 SAKLRVARK 313 >gi|262831468|sp|C5WIJ4|RSMH_STRDG RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 316 Score = 176 bits (446), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 110/308 (35%), Positives = 171/308 (55%), Gaps = 12/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 HV VLL + + +L+ P + +DAT G G+S S ++ D+D A+ Q Sbjct: 7 HVTVLLHETVDMLDIKPNGIYVDATLGGSGHSAYLLSKLSEQGHLYCFDQDQKAIDNAQV 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSG 131 T++ Y K Q + + F L+ + GVD G+++DLGVSS Q+D +RGFS+ + Sbjct: 67 TLKSYIDKGQVTFIKDNFRHLKARLTALGVDEIDGILYDLGVSSPQLDERERGFSYNQDA 126 Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM ++A DVVN DL +I GE+K + +IA I + R P +TT + Sbjct: 127 PLDMRMDRQAPLTAYDVVNTYPFNDLVKIFFKYGEDKFSKQIARKIEQARAIKPIETTTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ LI+ + + HPA + FQA+RI VN+E+ + ++ A + L G + V++ Sbjct: 187 LAELIKAAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQDAMELLALDGRISVIT 246 Query: 250 FHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDRL K+ F S V IP + P F+ +++K ++P+QE++A N R+ S Sbjct: 247 FHSLEDRLTKQLFKEASTVDVPKGLPFIPEDMKP-TFELVSRKPILPSQEELAANNRAHS 305 Query: 309 AKLRAGMR 316 AKLR + Sbjct: 306 AKLRVAKK 313 >gi|154505717|ref|ZP_02042455.1| hypothetical protein RUMGNA_03257 [Ruminococcus gnavus ATCC 29149] gi|153794014|gb|EDN76434.1| hypothetical protein RUMGNA_03257 [Ruminococcus gnavus ATCC 29149] Length = 315 Score = 176 bits (446), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 103/303 (33%), Positives = 169/303 (55%), Gaps = 11/303 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H VLLE+ + L P + +DAT G GG++ S+ I +D+D A+ Sbjct: 9 HTSVLLEETVDGLKVKPDGIYVDATLGGGGHAYEVASRLSDKGRFIGIDQDADAIEAAGA 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + E+ ++ ++ + ++ + + G VDG+V DLGVSS Q+D +RGFS++ PL Sbjct: 69 RLSGFGEKVTIIRSNYCDMKPRLHEIGIDKVDGIVIDLGVSSYQLDTAERGFSYRTDAPL 128 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM +A D+VN + +L R++ GE+K A IA IV R P +TT L+ Sbjct: 129 DMRMDQRQTTTAKDIVNDYSEAELYRVIRDYGEDKFAKNIAKHIVMERGKHPIETTGQLN 188 Query: 193 SLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I++ + F K + HP+ R+FQA+RI +N E++ L + L L GG + +++F Sbjct: 189 EVIRRAIPMKFQKTSG-HPSKRTFQAIRIELNRELDVLRETLDDMIDMLNPGGRICIITF 247 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK F H + + + + IT+K ++P++E++ +N RS+SA Sbjct: 248 HSLEDRIVKSAFRKNENPCTCPSHFPVCVCGNISKGKVITRKPILPSEEELMYNSRSKSA 307 Query: 310 KLR 312 KLR Sbjct: 308 KLR 310 >gi|257438103|ref|ZP_05613858.1| S-adenosyl-methyltransferase MraW [Faecalibacterium prausnitzii A2-165] gi|257199434|gb|EEU97718.1| S-adenosyl-methyltransferase MraW [Faecalibacterium prausnitzii A2-165] Length = 322 Score = 176 bits (446), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 113/304 (37%), Positives = 169/304 (55%), Gaps = 12/304 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-----KMGSNVIALDRDPFAVSC 73 +HVPVLL + + L P LD T G G+SR + G +I+LD+DP AV Sbjct: 16 EHVPVLLNECLDGLKIDPAGTYLDGTAGGAGHSRQIALRLNGEQGGRLISLDQDPDAVQT 75 Query: 74 GQETMRDYKEQFSLFQATF---SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + ++ Q F Q + + + ++G + DLGVSS Q+D RGFS++ Sbjct: 76 ARARLAGLPA--TVVQINFRYAGQALEQLGIETINGALLDLGVSSHQLDDAARGFSYRAD 133 Query: 131 GPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRMS G +A+D+VN + ++L RIL GEE A +IA IV+ R++AP +TT Sbjct: 134 APLDMRMSQEGETAADLVNSESREELARILRDYGEEPFAWQIAGRIVEARETAPIETTLQ 193 Query: 191 LSSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ ++ + ++ + +P+ R+FQALRI VN+E++ L +GL + L GG L V++ Sbjct: 194 LADIVASAMPPAERRKNKNPSRRTFQALRIAVNHELDALEEGLDTIFAHLAPGGRLCVIT 253 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDRLVK F S + A + IT+K + +++ NRRSRS Sbjct: 254 FHSLEDRLVKNKFRRWSTACTCPPEFPVCVCGGKAKAKLITRKPIEANTQELEENRRSRS 313 Query: 309 AKLR 312 A LR Sbjct: 314 AHLR 317 >gi|299768536|ref|YP_003730562.1| S-adenosyl-methyltransferase MraW [Acinetobacter sp. DR1] gi|298698624|gb|ADI89189.1| S-adenosyl-methyltransferase MraW [Acinetobacter sp. DR1] Length = 307 Score = 176 bits (446), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 123/315 (39%), Positives = 175/315 (55%), Gaps = 26/315 (8%) Query: 20 HVPVLL-EKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDP----FAV 71 H+ VLL E V +LL V +DATFG GG++R K+ N V A D+DP A Sbjct: 3 HISVLLFETVESLLADRTTGVYIDATFGRGGHTRLLLSKLDENARVYAFDKDPQALEVAA 62 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQ 128 + QE R F++ A+F+ +++ + + GV DG++ DLGVSS Q+D +RGFSF Sbjct: 63 ALAQEDPR-----FTIIHASFADIKEKMQEIGVMSVDGIMADLGVSSPQLDQAERGFSFM 117 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM S G++A++ + + + L I+ GEE+ + RIA AI + + T Sbjct: 118 QDGPLDMRMDNSKGLTAAEWLLEIEEEQLANIIYQYGEERYSRRIAKAI---KNAGKLDT 174 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T L+ L+ KT + HPATR+FQA+RI +N E+E++ L A LK G L V Sbjct: 175 TAQLAELV-KTAHPKWEKHKHPATRTFQAIRIAINKELEDIEVFLPQAVDLLKPEGRLSV 233 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV--VVPTQEDVAFNRR 305 +SFHSLEDRL+K+F S +P V KK+ V ++E+V N R Sbjct: 234 ISFHSLEDRLIKQFIQKESTLAEDFGWGMPEQ---RVDTRRLKKISRVRASEEEVKANPR 290 Query: 306 SRSAKLRAGMRTVER 320 SRSA LR R E+ Sbjct: 291 SRSAWLRVAERLEEK 305 >gi|225860373|ref|YP_002741882.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae Taiwan19F-14] gi|303255210|ref|ZP_07341284.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae BS455] gi|262825688|sp|C1CPL0|RSMH_STRZT RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|225727237|gb|ACO23088.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae Taiwan19F-14] gi|302597843|gb|EFL64915.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae BS455] Length = 316 Score = 176 bits (446), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 111/309 (35%), Positives = 175/309 (56%), Gaps = 14/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 HV VLL + I +L+ P + +DAT G G+S S ++ A D+D A+ Q+ Sbjct: 7 HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66 Query: 77 TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y E+ + + F LQ + + GV DG+ +DLGVSS Q+D +RGFS++K Sbjct: 67 RLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ + ++A +VVN + DL RI GE+K + +IA I + R+ P +TT + Sbjct: 127 PLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186 Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ +I K+ +K + HPA + FQA+RI VN+E+ + ++ A L G + V+ Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVI 245 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F S +V IP + P + + + +K ++P+ E++ N RS Sbjct: 246 TFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKM-ELVARKPILPSAEELEANNRSH 304 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 305 SAKLRVARK 313 >gi|298346700|ref|YP_003719387.1| S-adenosyl-methyltransferase [Mobiluncus curtisii ATCC 43063] gi|304389591|ref|ZP_07371553.1| S-adenosyl-methyltransferase MraW [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|298236761|gb|ADI67893.1| S-adenosyl-methyltransferase [Mobiluncus curtisii ATCC 43063] gi|304327144|gb|EFL94380.1| S-adenosyl-methyltransferase MraW [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 379 Score = 176 bits (446), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 110/299 (36%), Positives = 173/299 (57%), Gaps = 16/299 (5%) Query: 37 GKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQ 94 G V++DAT G GG+S + +I +DRDP A + D+ + S+ T+ + Sbjct: 45 GPVLVDATLGMGGHSAYLLESHPQLRIIGIDRDPQARDLAATRLSDFANRLSIVGTTYGE 104 Query: 95 LQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSF-QKSGPLDMRMS-CSGISASDVVN 149 L D + G VDG++ DLGVSS+Q+D +RGF++ PLDMRM+ SG +A+D +N Sbjct: 105 LDDVLAQHGLSQVDGILADLGVSSLQLDEAERGFAYAHPEAPLDMRMNQSSGFTAADFLN 164 Query: 150 QANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYF-SKNNRIH 208 A V+++ +L GEEK + +A AIVK RQ+ P Q + L +I+ T+ ++ + Sbjct: 165 LAEVEEIAAVLHTYGEEKFSWPLAKAIVKARQNQPLQVSGQLVQIIRDTIPAPARRTGGN 224 Query: 209 PATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFAS---- 264 PA R+FQALR+ VN+E+ +L + L A +++ GG ++V S+ SLEDRLVK+ FA+ Sbjct: 225 PAKRTFQALRVAVNDELGDLERFLTKALASVRVGGRIVVESYQSLEDRLVKRAFAAGIHP 284 Query: 265 RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIE 323 + K + V +P A P + +T + + +VA N R+ S +LRA +T E E Sbjct: 285 AAPKGLPV---LPEQAQP-WLRDLTHGSRLADESEVAQNPRAASLRLRAVEKTREPHPE 339 >gi|88704092|ref|ZP_01101807.1| S-adenosyl-methyltransferase mraW [Congregibacter litoralis KT71] gi|88701919|gb|EAQ99023.1| S-adenosyl-methyltransferase mraW [Congregibacter litoralis KT71] Length = 308 Score = 176 bits (446), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 120/300 (40%), Positives = 174/300 (58%), Gaps = 9/300 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H VLL + + L +P + +D TFG GG+SR + N + A D+D A +E Sbjct: 5 HETVLLHEAVDALVGSPAGLYVDGTFGRGGHSREILRRLDNQGRLFACDKDEEAERDAEE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + ++FS + +F+ L ++ ++G VDG++ DLGVSS Q+D +RGFSFQ+ GPL Sbjct: 65 LLAG-DDRFSFARGSFAALPAFLEERGLGAVDGILLDLGVSSPQLDQAERGFSFQQDGPL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S G SA+D + A +++ +L GEE+ A RIA AIVK R P T L+ Sbjct: 124 DMRMDRSRGESAADWIAAAPEQEIIDVLREYGEERYARRIAAAIVKARSEKPLTRTAQLA 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 S++ + + ++ HPATRSFQA+RI VN E+++LA+ L A L GG L+V+SFHS Sbjct: 184 SIVSEAHPRWEKHK-HPATRSFQAIRIRVNRELDDLAELLSLALSVLAVGGRLVVISFHS 242 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDRLVK+ S R + + V + K V + ++VA N RSRSA +R Sbjct: 243 LEDRLVKRHLRDMSRGPQLPRDLPVRDVDVGVPMRLLGKAVRASDQEVAANPRSRSAIMR 302 >gi|315656834|ref|ZP_07909721.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492789|gb|EFU82393.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 378 Score = 176 bits (446), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 110/299 (36%), Positives = 173/299 (57%), Gaps = 16/299 (5%) Query: 37 GKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQ 94 G V++DAT G GG+S + +I +DRDP A + D+ + S+ T+ + Sbjct: 45 GPVLVDATLGMGGHSAYLLESHPQLRIIGIDRDPQARDLAATRLSDFANRLSIVGTTYGE 104 Query: 95 LQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSF-QKSGPLDMRMS-CSGISASDVVN 149 L D + G VDG++ DLGVSS+Q+D +RGF++ PLDMRM+ SG +A+D +N Sbjct: 105 LDDVLAQHGLSQVDGILADLGVSSLQLDEAERGFAYAHPEAPLDMRMNQSSGFTAADFLN 164 Query: 150 QANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYF-SKNNRIH 208 A V+++ +L GEEK + +A AIVK RQ+ P Q + L +I+ T+ ++ + Sbjct: 165 LAEVEEIAAVLHTYGEEKFSWPLAKAIVKARQNQPLQVSGQLVQIIRDTIPAPARRTGGN 224 Query: 209 PATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFAS---- 264 PA R+FQALR+ VN+E+ +L + L A +++ GG ++V S+ SLEDRLVK+ FA+ Sbjct: 225 PAKRTFQALRVAVNDELGDLERFLTKALASVRVGGRIVVESYQSLEDRLVKRAFAAGIHP 284 Query: 265 RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIE 323 + K + V +P A P + +T + + +VA N R+ S +LRA +T E E Sbjct: 285 AAPKGLPV---LPEQAQP-WLRDLTHGSRLADESEVAQNPRAASLRLRAVEKTREPHPE 339 >gi|83720235|ref|YP_441658.1| S-adenosyl-methyltransferase MraW [Burkholderia thailandensis E264] gi|167580465|ref|ZP_02373339.1| S-adenosyl-methyltransferase MraW [Burkholderia thailandensis TXDOH] gi|167618573|ref|ZP_02387204.1| S-adenosyl-methyltransferase MraW [Burkholderia thailandensis Bt4] gi|257137827|ref|ZP_05586089.1| S-adenosyl-methyltransferase MraW [Burkholderia thailandensis E264] gi|123537607|sp|Q2SZJ1|RSMH_BURTA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|83654060|gb|ABC38123.1| S-adenosyl-methyltransferase MraW [Burkholderia thailandensis E264] Length = 313 Score = 176 bits (446), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 119/313 (38%), Positives = 183/313 (58%), Gaps = 23/313 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAV--SCG 74 H VLL++ + L P V +D TFG GG+SR+ S+ +IA D+DP A+ + G Sbjct: 7 HRTVLLDEAVDALVTRPDGVYVDGTFGRGGHSRAVLARLSDAGRLIAFDKDPRAIETASG 66 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E R F + +F+ ++ + +GV GV+ DLGVSS Q+D +RGFSF+ +G Sbjct: 67 IEDAR-----FEIVHDSFAAMKGALDARGVGRVSGVLLDLGVSSPQVDDPERGFSFRANG 121 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQ 186 PLDMRM + G SA++ + +A+V++LT ++ GEE+ A +IA AIV RR + P Sbjct: 122 PLDMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRLGPLD 181 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 +T +L+ ++ V + + PATR+FQA+RI VN E+ +L L +A L+ GG L+ Sbjct: 182 STGELAQIVGHVVKTREKGK-DPATRTFQAIRIHVNQELADLQVVLEAALSLLEQGGRLV 240 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA--HPAVFQSITKKVVVPTQEDVAFNR 304 V+SFHSLEDR+VK+F + + AV +P A P+ + + + P+ +VA N Sbjct: 241 VISFHSLEDRIVKRFLQTHA-SAPAVDRRLPIRAVDLPSPPLKLLGR-MFPSDAEVAANP 298 Query: 305 RSRSAKLRAGMRT 317 R+RSA +R R Sbjct: 299 RARSAVMRIAERV 311 >gi|325106882|ref|YP_004267950.1| ribosomal RNA small subunit methyltransferase H [Planctomyces brasiliensis DSM 5305] gi|324967150|gb|ADY57928.1| Ribosomal RNA small subunit methyltransferase H [Planctomyces brasiliensis DSM 5305] Length = 307 Score = 176 bits (446), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 112/304 (36%), Positives = 161/304 (52%), Gaps = 24/304 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H PVLL + I + PG ++D T GA G+S K G +I LDRDP ++ Sbjct: 9 HRPVLLRETIQGMELKPGMTVIDGTVGAAGHSSEIWKRIQPGGRLIGLDRDPEMLARSSC 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + D + + + +++ + VD ++ DLG+SS Q+ RGF F G LDMR Sbjct: 69 RLGDSADLIHASYLDANGVLEHLGVEKVDRLLVDLGLSSDQLADDQRGFGFATEGQLDMR 128 Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 + G +N+A+V ++T++L GEE QA++IA +V R+S P + L +I Sbjct: 129 FDMTQGKPVHHWLNKADVAEITKVLSEYGEEPQAAQIAAKVVDARRSQPITSVAALREII 188 Query: 196 QKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLR-SAEKALKAGGLLIVVSFHS 252 +K + HPATR+FQALRIF N E+E L + L +A LK GGLL V++FHS Sbjct: 189 EKVAGGRGRAAGKSHPATRTFQALRIFANAELEHLQRFLTITAPYVLKPGGLLAVITFHS 248 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDRL K+ A R V+ +KK + PT ++ N RSRSAKLR Sbjct: 249 LEDRLTKQALADRE-----------------VWADSSKKPIGPTPLEIKMNPRSRSAKLR 291 Query: 313 AGMR 316 G+R Sbjct: 292 IGIR 295 >gi|262066020|ref|ZP_06025632.1| S-adenosyl-methyltransferase MraW [Fusobacterium periodonticum ATCC 33693] gi|291380270|gb|EFE87788.1| S-adenosyl-methyltransferase MraW [Fusobacterium periodonticum ATCC 33693] Length = 314 Score = 176 bits (446), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 105/313 (33%), Positives = 176/313 (56%), Gaps = 20/313 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+PVL + + L P V +D T G G +S + S+ ++++D+D A+ ++ Sbjct: 9 HIPVLYYETLDNLVINPDGVYIDCTLGGGSHSEGILERLSDKGLLLSIDQDSNAIEYSKK 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + Y ++ + + F + G VDG++ D+GVSS Q+D +RGFS++ L Sbjct: 69 RLEKYASKWKVLKGNFENIDTLAYMAGIDKVDGILMDIGVSSKQLDEAERGFSYRYDVKL 128 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +SA DVVN + ++L+RI+ GEE+ A +IA I + R++ P TT +L Sbjct: 129 DMRMNTEQKLSAYDVVNTYSEEELSRIIFEYGEERFARKIAKLICENRKTKPITTTFELV 188 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +LI++ + + HPA ++FQA+RI VN E+E L + A + LK GG L +++FHS Sbjct: 189 ALIRRA--YPERASKHPAKKTFQAIRIEVNRELEVLENAMSKAVELLKVGGRLGIITFHS 246 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV------FQSITKKVVVPTQEDVAFNRRS 306 LEDR+VK F K +A P + + F+ IT+K ++P ++++ N R+ Sbjct: 247 LEDRIVKNKF-----KDLATACKCPKDIPICICGGVKKFEVITRKPIIPVEDELKNNNRA 301 Query: 307 RSAKLRAGMRTVE 319 S+KLR R ++ Sbjct: 302 HSSKLRILERILD 314 >gi|309388985|gb|ADO76865.1| S-adenosyl-methyltransferase MraW [Halanaerobium praevalens DSM 2228] Length = 310 Score = 176 bits (446), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 118/311 (37%), Positives = 171/311 (54%), Gaps = 20/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCGQE 76 H VLL++ I L + LD T G G+S S + IALDRD A+ + Sbjct: 5 HQAVLLKEAIDYLEIKKDGIYLDGTLGRAGHSSEILHNLSEIGKLIALDRDTAAIKAVES 64 Query: 77 TMRDYKE---QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 K + S FQ Q+ D + K VDG++FDLGVSS Q+D +RGFS+QK+GPL Sbjct: 65 KFSKSKSLILKHSNFQ-DLDQVLDQLKIKAVDGMLFDLGVSSPQLDNPERGFSYQKNGPL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ S ++A +VN + +L +I+ GEE ++RIA IVK R+ +TT DL Sbjct: 124 DMRMNSSQSLTAKTIVNNYSAAELEKIITEYGEENWSARIAEFIVKMRKEKVIETTDDLV 183 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + + + + HPA R+FQALRI NNE+E+L + A LK GG L++++FH Sbjct: 184 EVIKAAIPKAVRRSGGHPARRTFQALRIETNNELEQLKNLIDKAVSYLKPGGRLVIITFH 243 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV------FQSITKKVVVPTQEDVAFNRR 305 SLEDR+VK F + +A P + V + ITK + ++ + N R Sbjct: 244 SLEDRIVKHKF-----RDLAKDCTCPPDFPICVCDKKSEVKVITKSPIQASEIEKEGNPR 298 Query: 306 SRSAKLRAGMR 316 SRSAK+R + Sbjct: 299 SRSAKMRVAEK 309 >gi|167564207|ref|ZP_02357123.1| S-adenosyl-methyltransferase MraW [Burkholderia oklahomensis EO147] gi|167571357|ref|ZP_02364231.1| S-adenosyl-methyltransferase MraW [Burkholderia oklahomensis C6786] Length = 313 Score = 176 bits (446), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 119/313 (38%), Positives = 186/313 (59%), Gaps = 23/313 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGS--NVIALDRDPFAVSCGQE 76 H VLL++ + L P V +D TFG GG+SR+ ++G+ +IA D+DP A+ E Sbjct: 7 HRTVLLDEAVDALVTRPDGVYVDGTFGRGGHSRAVLGRLGAAGRLIAFDKDPRAI----E 62 Query: 77 TMRDYKE-QFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 T + ++ +F + +F+ L+ + +GV GV+ DLGVSS Q+D +RGFSF+ +GP Sbjct: 63 TAKGIEDARFEIVHDSFAALKGALEARGVGRVSGVLLDLGVSSPQVDDPERGFSFRANGP 122 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQT 187 LDMRM + G SA++ + +A+V++LT ++ GEE+ A +IA AIV RR + P + Sbjct: 123 LDMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRLGPLDS 182 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T +L+ ++ V + + PATR+FQA+RI VN E+ +L L +A +L+ GG L+V Sbjct: 183 TGELAQIVGHVVKTREKGK-DPATRTFQAIRIHVNQELADLQVVLEAALSSLEQGGRLVV 241 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNR 304 +SFHSLEDR+VK+F + + AV +P A S K++ P+ +V N Sbjct: 242 ISFHSLEDRIVKRFMQTHA-SAPAVDRRLPIRA--VDLPSPPLKLLGRKFPSDAEVLANP 298 Query: 305 RSRSAKLRAGMRT 317 R+RSA +R R Sbjct: 299 RARSAVMRIAERV 311 >gi|317506606|ref|ZP_07964398.1| MraW methylase [Segniliparus rugosus ATCC BAA-974] gi|316255115|gb|EFV14393.1| MraW methylase [Segniliparus rugosus ATCC BAA-974] Length = 316 Score = 176 bits (445), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 105/298 (35%), Positives = 169/298 (56%), Gaps = 8/298 (2%) Query: 24 LLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETM 78 +L +V++LL PA P V++D T G GG++R+ + V+ +DRD A+ +E + Sbjct: 1 MLNRVVSLLAPAFDAPDPVLVDGTLGLGGHTRALLERFPTLRVVGMDRDAKAIEVAKERL 60 Query: 79 RDYKEQFSLFQATFSQLQDYVPD-KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 ++ A + +++ + D + V G + DLGVSSMQ+D +RGF++ K PLDMRM Sbjct: 61 GGLADRVRFVHARYDEVERALGDGENVQGYLLDLGVSSMQLDQAERGFAYSKDAPLDMRM 120 Query: 138 SCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 S ++A +V+ K+L R+L GEE+ A+RIA IV+RR + P ++ +L LI Sbjct: 121 DTSAELTAHEVLATYGEKELARVLRTYGEERFAARIAAEIVRRRATEPLASSAELVRLID 180 Query: 197 KTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + +K HPA R+FQALR+ VN+E+ L L A AL G ++V+++ SLED Sbjct: 181 DVIPAKAKRTGGHPAKRTFQALRVEVNDELGSLRAVLPKALAALAPQGRIVVLAYQSLED 240 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 R+VK FA + + + A F S+T+ + +E+ + N R+ S +LRA Sbjct: 241 RIVKDEFARATTSRTPIGLPVELPGFEAEFVSLTRGAELAGEEETSENPRAASVRLRA 298 >gi|76579862|gb|ABA49337.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 1710b] Length = 413 Score = 176 bits (445), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 118/311 (37%), Positives = 182/311 (58%), Gaps = 19/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMG--SNVIALDRDPFAVSCGQE 76 H VLL++ + L P V +D TFG GG+SR+ ++G +IA D+DP A+ E Sbjct: 107 HRTVLLDEAVDALVTRPDGVYVDGTFGRGGHSRAVLARLGDAGRLIAFDKDPRAIETA-E 165 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ D + F + +F+ ++ + +GV GV+ DLGVSS Q+D RGFSF+ +GPL Sbjct: 166 SIEDAR--FEIVHDSFAAMKGALDARGVGRVSGVLLDLGVSSPQVDDPARGFSFRANGPL 223 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTT 188 DMRM + G SA++ + +A+V++LT ++ GEE+ A +IA AIV RR + P +T Sbjct: 224 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRLGPLDST 283 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ ++ V + + PATR+FQA+RI VN E+ +L L +A L+ GG L+V+ Sbjct: 284 GELAQIVGHVVKTREKGK-DPATRTFQAIRIHVNQELADLQVVLEAALSLLEQGGRLVVI 342 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH--PAVFQSITKKVVVPTQEDVAFNRRS 306 SFHSLEDR+VK+F + + AV +P A P + + + P +VA N R+ Sbjct: 343 SFHSLEDRIVKRFLQAHA-SAPAVDRRLPIRAADLPRPPLKLLGR-MFPNDAEVAANPRA 400 Query: 307 RSAKLRAGMRT 317 RSA +R R Sbjct: 401 RSAVMRIAERV 411 >gi|260591737|ref|ZP_05857195.1| S-adenosyl-methyltransferase MraW [Prevotella veroralis F0319] gi|260536021|gb|EEX18638.1| S-adenosyl-methyltransferase MraW [Prevotella veroralis F0319] Length = 326 Score = 176 bits (445), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 114/306 (37%), Positives = 171/306 (55%), Gaps = 21/306 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFA------ 70 HVPVLL I LN P + +D TFG GG+SR S K G ++ + D+D A Sbjct: 21 HVPVLLNDSIEGLNIHPNGIYVDVTFGGGGHSREILSRLKKGCHLYSFDQDADAEQNVSK 80 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 + +E + ++F+ ++ F L++ Y +DG++ DLGVSS D RGFSF Sbjct: 81 MGLSEEQI----DRFTFIRSNFRYLKNWMRYYSIDHIDGLLADLGVSSHHFDDETRGFSF 136 Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + PLDMRM+ +G +A+D++N+ + + + IL + GE KQ+ RIA AIVK R+ F+ Sbjct: 137 RFEAPLDMRMNKRAGRTAADILNEYDEEQIADILYLYGEIKQSRRIAAAIVKAREKRTFK 196 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 TT+DL S+++ ++ + + FQALRI VN+E++ L + L A + L GG L Sbjct: 197 TTKDLLSIVEPFFLHAREKK--DMAKMFQALRIEVNHEMDALREMLLGATELLAPGGRLS 254 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+++HSLEDR+VK +SG V F+ I KV+ + + N RS Sbjct: 255 VITYHSLEDRMVKNIM--KSGNVEGKVKQDFYGRRETPFRLINNKVITASNAEQELNPRS 312 Query: 307 RSAKLR 312 RSAKLR Sbjct: 313 RSAKLR 318 >gi|312888802|ref|ZP_07748365.1| S-adenosyl-methyltransferase MraW [Mucilaginibacter paludis DSM 18603] gi|311298677|gb|EFQ75783.1| S-adenosyl-methyltransferase MraW [Mucilaginibacter paludis DSM 18603] Length = 300 Score = 176 bits (445), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 114/304 (37%), Positives = 164/304 (53%), Gaps = 16/304 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MG--SNVIALDRDPFAVSCGQE 76 H PV+L + I LN P +D TFG GG+SR K +G +IA D+D V Sbjct: 5 HNPVMLAECIEGLNINPEGTYVDVTFGGGGHSREILKHLGPQGKLIAFDQD---VDAQAN 61 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + D E+F F L+++ G VDG++ DLGVSS Q D +RGFS + L Sbjct: 62 AIDD--ERFVFVDQNFRYLKNFCRLHGAIPVDGILADLGVSSHQFDKAERGFSTRFDADL 119 Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S +A D+VN DL RI G+ GE + A +A IV R ++P T DL Sbjct: 120 DMRMDQSATQTAKDIVNTYAEADLHRIFGMYGEIQNAKTLARTIVTARLNSPINTIADLK 179 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 I + K N+ + FQALRI VN E+E L + L+ + L GG L+V+S+HS Sbjct: 180 GAIATLIPRGKENKY--LAQVFQALRIEVNQELEALQEFLKQTVEVLAPGGRLVVMSYHS 237 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDRLVK F A + + ++ P F+++++K + T++++ N R+RSAKLR Sbjct: 238 LEDRLVKSFIAKGKFSGELEKDIYGNDDRP--FEAVSRKAITATEDEIKLNNRARSAKLR 295 Query: 313 AGMR 316 ++ Sbjct: 296 IAVK 299 >gi|32266778|ref|NP_860810.1| S-adenosyl-methyltransferase MraW [Helicobacter hepaticus ATCC 51449] gi|42559453|sp|Q7VGP1|RSMH_HELHP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|32262830|gb|AAP77876.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449] Length = 317 Score = 176 bits (445), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 114/307 (37%), Positives = 175/307 (57%), Gaps = 18/307 (5%) Query: 20 HVPVLLEKVIALLNP-APGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76 H VL ++I L+ +++D T G GG++ + N V A D+D +A++ +E Sbjct: 3 HYSVLKNEMIQALDCLKEDSILIDCTLGFGGHTIGALQAYPNIEVYAFDKDIYALNLAKE 62 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ Y + FSQ D VP+ V G++ D+GVSSMQ+D RGFSF S L Sbjct: 63 RLKPYLQNIHFCHNAFSQFLDIVPNVVLPRVRGIIADIGVSSMQLDETQRGFSFV-SSTL 121 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + ++A+ V+N + L I I GE +Q+ ++A I R+ PF + +LS Sbjct: 122 DMRMDTRADLNATKVINTYSPIRLEEIFRIYGEVRQSKKLAEIIAYERKKKPFSSCLELS 181 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL----LIVV 248 +LI++ +F + IHPAT +FQALRI VN+E+ EL + L + E A G + + ++ Sbjct: 182 TLIEQ--HFPRVGGIHPATLAFQALRIEVNDELGELKRLLHNIELAFDEGKIASCRVGII 239 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI---PSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 SFHSLEDR++K+ F S + + N H A Q +TKK ++PT +++A N+R Sbjct: 240 SFHSLEDRIIKQCFKQWSKSCICAEESLRCECGNNH-AKGQILTKKPIIPTPQEIAQNKR 298 Query: 306 SRSAKLR 312 SRSAKLR Sbjct: 299 SRSAKLR 305 >gi|238022305|ref|ZP_04602731.1| hypothetical protein GCWU000324_02212 [Kingella oralis ATCC 51147] gi|237866919|gb|EEP67961.1| hypothetical protein GCWU000324_02212 [Kingella oralis ATCC 51147] Length = 324 Score = 176 bits (445), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 114/309 (36%), Positives = 169/309 (54%), Gaps = 10/309 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQE 76 H+ VLL + + LN + +D TFG GG+SR K+G ++ D+DP A++ ++ Sbjct: 12 HITVLLNEAVDALNIQENGIYVDGTFGRGGHSRLILSKLGEKGRLVVFDKDPQAIAVARD 71 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + S+ FS Q + + GV DG +FDLG+SS QID RGFSF+ PL Sbjct: 72 -LAAQDARVSVVHNGFSHFQAALDELGVAKIDGALFDLGISSPQIDDASRGFSFRFDAPL 130 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + G SA+D + A+ ++ ++ GEE+ + IA AIV +R P TT L+ Sbjct: 131 DMRMDTTRGQSAADWLAVASEDEINEVIKNYGEERFSRAIARAIVAQRGETPIDTTSKLA 190 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 + + V + + PATR+FQA+RIF+N E++E+ L A + L GG L V++FHS Sbjct: 191 KIAAQCVRTRERGQ-DPATRTFQAIRIFINRELDEIQAVLPQAVERLNLGGRLAVIAFHS 249 Query: 253 LEDRLVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDRLVK+F + + M+ P K + + E+VA N R+RSA L Sbjct: 250 LEDRLVKQFIRQYATHAPLPKWAMVREADLPQPPLRAIGKAIKASAEEVAANPRARSAVL 309 Query: 312 RAGMRTVER 320 R RT R Sbjct: 310 RVAERTAGR 318 >gi|191638270|ref|YP_001987436.1| S-adenosyl-methyltransferase MraW [Lactobacillus casei BL23] gi|239631645|ref|ZP_04674676.1| SAM-dependent methyltransferase for cell envelope biogenesis [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301066319|ref|YP_003788342.1| SAM-dependent methyltransferase for cell envelope biogenesis [Lactobacillus casei str. Zhang] gi|263456244|sp|B3WDX7|RSMH_LACCB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|190712572|emb|CAQ66578.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Lactobacillus casei BL23] gi|239526110|gb|EEQ65111.1| SAM-dependent methyltransferase for cell envelope biogenesis [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300438726|gb|ADK18492.1| SAM-dependent methyltransferase for cell envelope biogenesis [Lactobacillus casei str. Zhang] gi|327382302|gb|AEA53778.1| Ribosomal RNA small subunit methyltransferase H [Lactobacillus casei LC2W] gi|327385497|gb|AEA56971.1| Ribosomal RNA small subunit methyltransferase H [Lactobacillus casei BD-II] Length = 313 Score = 176 bits (445), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 113/303 (37%), Positives = 163/303 (53%), Gaps = 12/303 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H VLL++ A L P + +DAT G GG++R + +IA D+D A++ Sbjct: 6 HETVLLKEATAALAVKPAGIYVDATLGRGGHTRQILNQLTTGRLIAFDQDEAAIATVTAD 65 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 +Q +L F L D + G VDG+++DLGVSS Q D RGFS++ PLD Sbjct: 66 FGTLPKQLTLVHRNFRDLTDALTTLGITEVDGILYDLGVSSPQFDDSKRGFSYRFDAPLD 125 Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM + A +VN+ DL RI GEE + +IA I + R P TT L Sbjct: 126 MRMDQRQTLDAKTIVNEWPYADLVRIFSRYGEEHFSKQIARRIEQARTVQPITTTFQLVE 185 Query: 194 LIQKTVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 LI+ + +K R HPA + FQA+RI VN+E+ L L A K + GG + V++F Sbjct: 186 LIKAGIP-AKARRTGGHPAKKVFQAIRIAVNDELSALESSLEQALKLINVGGRISVITFQ 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDRLVK F S R + IP++A P ++ + +K ++P++E++A N R+ SA Sbjct: 245 SLEDRLVKTMFKEVSSVQDVPRGLPVIPASAQPN-YRLVNRKPILPSEEELAVNHRAHSA 303 Query: 310 KLR 312 KLR Sbjct: 304 KLR 306 >gi|50914761|ref|YP_060733.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes MGAS10394] gi|50903835|gb|AAT87550.1| S-adenosyl-methyltransferase [Streptococcus pyogenes MGAS10394] Length = 337 Score = 176 bits (445), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 112/323 (34%), Positives = 180/323 (55%), Gaps = 17/323 (5%) Query: 5 SCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGS--NV 61 + K M+ HH V VLL + + +L+ P + +DAT G G+S K+G ++ Sbjct: 18 TIKVMTKEFHH-----VTVLLHETVDMLDIKPDGIYVDATLGGSGHSAYLLSKLGEEGHL 72 Query: 62 IALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSM 116 D+D A+ Q T++ Y K Q + + F L+ + GVD G+++DLGVSS Sbjct: 73 YCFDQDQKAIDNAQVTLKSYIDKGQVTFIKDNFRHLKARLTALGVDEIDGILYDLGVSSP 132 Query: 117 QIDCGDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175 Q+D +RGFS+++ PLDMRM S ++A +VVN DL +I GE+K + +IA Sbjct: 133 QLDERERGFSYKQDAPLDMRMDRQSLLTAYEVVNTYPFNDLVKIFFKYGEDKFSKQIARK 192 Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRS 234 I + R P +TT +L+ LI+ + + HPA + FQA+RI VN+E+ + ++ Sbjct: 193 IEQARAIKPIETTTELAELIKAAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQE 252 Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVV 293 A + L G + V++FHSLEDRL K+ F S V +IP + P F+ +++K + Sbjct: 253 AMELLALDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPLIPEDMKPK-FELVSRKPI 311 Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316 +P+ ++A N+R+ SAKLR + Sbjct: 312 LPSHSELAANKRAHSAKLRVAKK 334 >gi|317496841|ref|ZP_07955171.1| MraW methylase [Lachnospiraceae bacterium 5_1_63FAA] gi|316895853|gb|EFV18005.1| MraW methylase [Lachnospiraceae bacterium 5_1_63FAA] Length = 312 Score = 176 bits (445), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 101/311 (32%), Positives = 173/311 (55%), Gaps = 19/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+ VLL++ I L+ P + +D T G GG++ C+ S I +D+D A++ + Sbjct: 5 HISVLLDETIEELHIKPDGIYVDGTLGGGGHAYHVCQKLSEKGRYIGIDQDADAIAASTK 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + +K++ ++ + + + + D G VDG++ DLGVSS Q+D +RGF++++ PL Sbjct: 65 RLESFKDKVTIVRDNYVNMPKVLHDLGIEHVDGILLDLGVSSFQLDDKERGFTYREDVPL 124 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM ++A D+VN+ + +L I+ GEEK A IA IV +R+ +P +TT L Sbjct: 125 DMRMDQRQSLTARDIVNEYSEMELFHIIRDYGEEKFAKNIAKHIVNKRKESPIETTGQLI 184 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + + HPA ++FQA+RI N E++ L + + L GG L +++FH Sbjct: 185 EVIKSAIPMKVRAVGGHPAKKTFQAIRIECNRELDVLKDSIDAMIDLLNPGGRLCIITFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF------QSITKKVVVPTQEDVAFNRR 305 SLEDR+VK+ F P N V + +T+K ++P +E++ +N+R Sbjct: 245 SLEDRIVKRAFKKNENPCTC-----PPNFPVCVCGNVSKGKQLTRKPIIPGEEELEYNKR 299 Query: 306 SRSAKLRAGMR 316 ++S+KLR R Sbjct: 300 AKSSKLRVFER 310 >gi|157692188|ref|YP_001486650.1| S-adenosyl-methyltransferase MraW [Bacillus pumilus SAFR-032] gi|263446003|sp|A8FCX3|RSMH_BACP2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|157680946|gb|ABV62090.1| S-adenosyl-methyltransferase [Bacillus pumilus SAFR-032] Length = 310 Score = 176 bits (445), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 111/304 (36%), Positives = 170/304 (55%), Gaps = 13/304 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H VLL++ + LN +D T G G+S S +I D+D A+ +E Sbjct: 4 HETVLLKETVDGLNVKEDGTYVDCTLGGAGHSSYLLSQLSEKGTLIGFDQDDAALDHARE 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + K ++ F L++ + ++G VDGV+FDLGVSS Q+D +RGFS+ PL Sbjct: 64 KLAGSKANILFIKSNFRYLKERLNEQGITSVDGVIFDLGVSSPQLDTPERGFSYHHDAPL 123 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S +SA VVN+ +DL RI GEEK + +IA I + R+ AP +TT +L Sbjct: 124 DMRMDQSAALSAKKVVNEWPFEDLVRIFYKYGEEKFSKQIARKIEEARKKAPIETTGELV 183 Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I++ + ++ HPA R FQA+RI VN+E++ + L A + L G + V++FH Sbjct: 184 DIIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALEQAIELLNPKGRISVITFH 243 Query: 252 SLEDRLVKKFFASRSGKVMAVRH---MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SLEDR+ K F S + + H +IP P + + IT+K +V +++++ N R+RS Sbjct: 244 SLEDRICKSTFREMSS-LPELPHGLPVIPEGLEPKL-KLITRKPIVASEQELEHNNRARS 301 Query: 309 AKLR 312 AKLR Sbjct: 302 AKLR 305 >gi|145296128|ref|YP_001138949.1| S-adenosyl-methyltransferase MraW [Corynebacterium glutamicum R] gi|263447419|sp|A4QFN1|RSMH_CORGB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|140846048|dbj|BAF55047.1| hypothetical protein [Corynebacterium glutamicum R] Length = 337 Score = 176 bits (445), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 113/326 (34%), Positives = 176/326 (53%), Gaps = 28/326 (8%) Query: 20 HVPVLLEKVIALLNP-----APGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVS 72 HVPV+ +++ AL+ VI+DAT GAGG++ F + +I LDRD A+ Sbjct: 12 HVPVMRDRMAALIAENVEALGENAVIVDATLGAGGHAEFFLNTFPKARLIGLDRDQNALR 71 Query: 73 CGQETMRDYKEQFSLFQATFSQLQ-----------DYVPDKGVDGVVFDLGVSSMQIDCG 121 + + + E+F Q F L+ D + G+ G +FDLGVSSMQ+D Sbjct: 72 DARARLAPFGERFIGVQTRFDGLREVLESVEGDIIDLAREHGIAGALFDLGVSSMQLDQV 131 Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGF+++ PLDMRM + GI+A+D++N + D+ RIL G+E+ A +IA A++K R Sbjct: 132 ERGFAYRTDAPLDMRMDATQGITAADILNTYSHGDIARILKTYGDERFAGKIASAVLKER 191 Query: 181 QSAPFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 + PF T+ L L+ + ++ HPA R+FQALR+ VNNE++ L L AL Sbjct: 192 EKEPFTTSARLVELLYDAIPAATRRTGGHPAKRTFQALRVEVNNELDSLKNVLPQITDAL 251 Query: 240 KAGGLLIVVSFHSLEDRLVKKFF----ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295 GG + +S+ S ED+LVKKFF S++ + V +P A F+ +T+ Sbjct: 252 NVGGRAVFMSYQSHEDKLVKKFFTDLTTSKTPPGLPVD--LPGTA--PQFKQVTRGAETA 307 Query: 296 TQEDVAFNRRSRSAKLRAGMRTVERS 321 ++ ++ N R+ K+RA R S Sbjct: 308 SEAEIEENPRAAPVKVRAIERIANNS 333 >gi|169632239|ref|YP_001705975.1| S-adenosylmethionine methyltransferase [Acinetobacter baumannii SDF] gi|263433355|sp|B0VPF9|RSMH_ACIBS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|169151031|emb|CAO99677.1| S-adenosylmethionine methyltransferase [Acinetobacter baumannii] Length = 307 Score = 176 bits (445), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 121/311 (38%), Positives = 174/311 (55%), Gaps = 26/311 (8%) Query: 20 HVPVLL-EKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDP----FAV 71 H+ VLL E V +LL V +DATFG GG++ K+ N V A D+DP A Sbjct: 3 HISVLLFETVESLLADRTTGVYIDATFGRGGHTHLLLSKLDENARVYAFDKDPQALEVAA 62 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQ 128 + QE R F++ A+F+ +++ + + GV DG++ DLGVSS Q+D +RGFSF Sbjct: 63 ALAQEDPR-----FTIIHASFADIKEKMQEIGVQSVDGIMADLGVSSPQLDQAERGFSFM 117 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM S G++A++ + + +DL I+ GEE+ + RIA AI +Q+ T Sbjct: 118 QDGPLDMRMDNSKGLTAAEWLLEVEEEDLANIIYQYGEERHSRRIARAI---KQAGKLDT 174 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T L+ ++ KT + HPATR+FQA+RI +N E++++ L A LK G L V Sbjct: 175 TAQLAEIV-KTAHPKWEKHKHPATRTFQAIRIAINKELDDIEVFLPQAVDLLKPKGRLSV 233 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV--VVPTQEDVAFNRR 305 +SFHSLEDRL+K+F S +P V KK+ V ++E+V N R Sbjct: 234 ISFHSLEDRLIKQFIQKESTLTEDSGWGMPQQ---QVDTRRLKKISRVRVSEEEVKANPR 290 Query: 306 SRSAKLRAGMR 316 SRSA LR R Sbjct: 291 SRSAWLRVAER 301 >gi|254880783|ref|ZP_05253493.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 4_3_47FAA] gi|319639793|ref|ZP_07994523.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 3_1_40A] gi|254833576|gb|EET13885.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 4_3_47FAA] gi|317388610|gb|EFV69459.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 3_1_40A] Length = 304 Score = 176 bits (445), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 113/300 (37%), Positives = 170/300 (56%), Gaps = 16/300 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76 HVPVLL + + +N PG + +DATFG GG+S+ S +++ + D+D + Sbjct: 9 HVPVLLNESVDGMNIQPGGIYVDATFGGGGHSKEILSRLDSTAHLYSFDQDE---DAEKN 65 Query: 77 TMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + D +F+ ++ F L + Y +GVD ++ DLGVSS D +RGFSF+ G L Sbjct: 66 IVSD--SRFTFVRSNFRYLPNFLRYYGVEGVDAILADLGVSSHHFDDSERGFSFRFEGKL 123 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +G++A+DVVN + + L I + GE K + ++A AIVK R T D Sbjct: 124 DMRMNKRAGMTAADVVNTYDEERLANIFYLYGELKNSRKLASAIVKARGVKQIVTIGDFL 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ +F + + FQALRI VN E+E L + L +A KALK GG L+V+++HS Sbjct: 184 EVIKP--FFGREREKKELAKVFQALRIEVNQEMEALKEMLYAATKALKPGGRLVVITYHS 241 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK + + + A + + P F+ + KV+V E+V N RSRSAKLR Sbjct: 242 LEDRMVKNIMKTGNIEGKAEQDFFGNVQTP--FKLVNNKVIVAGNEEVTRNPRSRSAKLR 299 >gi|269123556|ref|YP_003306133.1| S-adenosyl-methyltransferase MraW [Streptobacillus moniliformis DSM 12112] gi|268314882|gb|ACZ01256.1| S-adenosyl-methyltransferase MraW [Streptobacillus moniliformis DSM 12112] Length = 309 Score = 176 bits (445), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 108/307 (35%), Positives = 177/307 (57%), Gaps = 14/307 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76 H+PVL ++V+ + + +D T G GG+S S S +IA+D+D A+ E Sbjct: 4 HLPVLYDEVLENIIDKKDLIYMDCTLGGGGHSEGILSNSTDNSKLIAIDQDENAIKYASE 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVP-----DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++ + + S+F+ F L D V DK VD ++ D+GVSS Q+D RGFS++K Sbjct: 64 RLKKFGNKVSIFKNNFENL-DIVAYLAGFDK-VDRILMDIGVSSKQLDDDKRGFSYRKEA 121 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM S +SA +V+N +++ IL GEE ++ RIA IV+ R++ +TT + Sbjct: 122 KLDMRMDESQKLSAYEVINNYKEEEIADILYKYGEEPKSRRIAKYIVEYRKNKSIETTIE 181 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ ++ K + K+ + HPA R+FQA+RI+VN E+E L + L + + L GG L+V++F Sbjct: 182 LADIVIKAI--GKSMKKHPAKRTFQAIRIYVNRELEVLEKALDKSIELLNPGGRLLVITF 239 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK+ F + I + + + +T+K +V ++++ N R+ SA Sbjct: 240 HSLEDRIVKEKFRKYENPCTCPYDLPICKCGNKSKGKVLTRKPIVSKEKELEANNRAHSA 299 Query: 310 KLRAGMR 316 KLR ++ Sbjct: 300 KLRVFIK 306 >gi|282854266|ref|ZP_06263603.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes J139] gi|282583719|gb|EFB89099.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes J139] Length = 346 Score = 175 bits (444), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 110/304 (36%), Positives = 165/304 (54%), Gaps = 11/304 (3%) Query: 20 HVPVLLEKVIALLN---PAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCG 74 HVPV+ +++ LL + +V +D T G GG++ + + +V + +DRD A++ Sbjct: 23 HVPVMRARILDLLAVVLKSGRRVHVDGTLGMGGHAEAVLRRFPDVELVGIDRDQQALTMA 82 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + + ++ L A +L + + D G VD V+ DLG+SS QID +RGFS+ Sbjct: 83 EARLEPFADRVHLVHAVHDELPEVLDDLGLDYVDSVLLDLGLSSFQIDEVERGFSYSVDS 142 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM SG +A+ ++N+++ DL R+L GEEK A RI AIV R P +T+ Sbjct: 143 PLDMRMDQSSGRTAAQILNESDPGDLVRMLREYGEEKFADRIVRAIVTERDRQPIETSGR 202 Query: 191 LSSLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L +I + + + HPA R+FQALRI VN E+E L L A L GG + V+ Sbjct: 203 LVEIITEAIPATVRRKRHSHPAKRTFQALRIAVNREMETLPAVLPRALNRLDVGGRIAVL 262 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 S+HSLEDR VK+ F + + A F +T+ P ++VA N RS S Sbjct: 263 SYHSLEDRPVKEAFRDACADTAPTGLPMVPESMAAKFNPVTRGAERPDADEVATNPRSAS 322 Query: 309 AKLR 312 A+LR Sbjct: 323 ARLR 326 >gi|25028617|ref|NP_738671.1| S-adenosyl-methyltransferase MraW [Corynebacterium efficiens YS-314] gi|259507675|ref|ZP_05750575.1| S-adenosyl-methyltransferase MraW [Corynebacterium efficiens YS-314] gi|30173070|sp|Q8FNT2|RSMH_COREF RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|23493903|dbj|BAC18871.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] gi|259164722|gb|EEW49276.1| S-adenosyl-methyltransferase MraW [Corynebacterium efficiens YS-314] Length = 338 Score = 175 bits (444), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 112/326 (34%), Positives = 178/326 (54%), Gaps = 28/326 (8%) Query: 20 HVPVLLEKVIALL-----NPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVS 72 HVPV+ +++ AL+ VI+DAT GAGG++ F + ++VI LDRD A+ Sbjct: 12 HVPVMRDRMAALIADHVREMGDRAVIVDATLGAGGHAEHFLTVFPEAHVIGLDRDENALR 71 Query: 73 CGQETMRDYKEQFSLFQATFSQLQ-----------DYVPDKGVDGVVFDLGVSSMQIDCG 121 E + + ++F + F L D +G+ G +FDLGVSSMQ+D Sbjct: 72 DAGERLARFGDRFLGVKTRFDGLSQVLATGEGDILDLARKEGISGALFDLGVSSMQLDQV 131 Query: 122 DRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGF+++ PLDMRM GI+A+D++N + D+ R+L G+E+ A +IA A++K R Sbjct: 132 ERGFAYRTDAPLDMRMDPTQGITAADILNTYSHGDIARVLKTYGDERFAGKIASAVLKER 191 Query: 181 QSAPFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 + PF T+ L L+ T+ ++ HPA R+FQALR+ VN E+E L+ L AL Sbjct: 192 EKEPFTTSARLVELLYDTIPAATRRTGGHPAKRTFQALRVEVNRELESLSNVLPQITDAL 251 Query: 240 KAGGLLIVVSFHSLEDRLVKKFF----ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295 GG + +S+ S ED+LVK+FF S++ + V +P A F+ +T+ Sbjct: 252 NVGGRAVFMSYQSHEDKLVKRFFTELTTSKTPPGLPVD--LPGTA--PRFRQVTRGAETA 307 Query: 296 TQEDVAFNRRSRSAKLRAGMRTVERS 321 ++ ++ N R+ K+RA R E + Sbjct: 308 SEAEIEENPRAAPVKVRAIERIAEHT 333 >gi|323127869|gb|ADX25166.1| S-adenosyl-methyltransferase MraW [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 337 Score = 175 bits (444), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 112/323 (34%), Positives = 176/323 (54%), Gaps = 17/323 (5%) Query: 5 SCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NV 61 + K M+ HH V VLL + + +L+ P + +DAT G G+S S ++ Sbjct: 18 TIKVMTKEFHH-----VTVLLHETVDMLDIKPNGIYVDATLGGSGHSAYLLSKLSEQGHL 72 Query: 62 IALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSM 116 D+D A+ Q ++ Y K Q + + F L+ + GV DG+++DLGVSS Sbjct: 73 YCFDQDQKAIDNAQLILKPYIDKGQVTFIKDNFRNLKARLEALGVTKIDGILYDLGVSSP 132 Query: 117 QIDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175 Q+D +RGFS+++ PLDMRM ++A DVVN DL +I GE+K + +IA Sbjct: 133 QLDERERGFSYKQDAPLDMRMDRQAPLTAYDVVNTYPFNDLVKIFFKYGEDKFSKQIARK 192 Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRS 234 I + R P +TT +L+ LI+ + + HPA + FQA+RI VN+E+ + ++ Sbjct: 193 IEQARAIKPIETTTELAELIKAAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQD 252 Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVV 293 A + L G + V++FHSLEDRL K+ F S V IP + P F+ +++K + Sbjct: 253 AMELLALDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPEDMKP-TFELVSRKPI 311 Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316 +P+QE++A N R+ SAKLR + Sbjct: 312 LPSQEELAANNRAHSAKLRVAKK 334 >gi|307544543|ref|YP_003897022.1| S-adenosyl-methyltransferase MraW [Halomonas elongata DSM 2581] gi|307216567|emb|CBV41837.1| S-adenosyl-methyltransferase MraW [Halomonas elongata DSM 2581] Length = 318 Score = 175 bits (444), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 121/313 (38%), Positives = 173/313 (55%), Gaps = 33/313 (10%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H VLL+ + L P LD TFG GG+SR+ + S ++A+DRDP A+ QE Sbjct: 15 HASVLLDGAVETLVHDPSGRYLDGTFGRGGHSRAILERLSPQGRLLAIDRDPQAI---QE 71 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +F+ + F++L D+ + DG++ D+GVSS Q+D +RGFSF + GP Sbjct: 72 AAAIEDARFAFERGDFARLGDFARAHDLHGKLDGILLDVGVSSPQLDDPERGFSFLRDGP 131 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM G SA+ + +A+ ++ R+ GEE+ A R+A AIV RR F T DL Sbjct: 132 LDMRMDPEHGESAAAWIARADEGEIARVFKTYGEERFARRLARAIVARRGERAFTRTADL 191 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +I K + + HPATR+FQALRI VN E+E+L L +A +AL GG L+V+SFH Sbjct: 192 AEVI-KAAHPAWEKGKHPATRAFQALRIQVNGELEQLDLALEAALEALAPGGHLVVISFH 250 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVV------PTQEDV 300 SLEDR VK+F +R + + H P I +++ PT E+V Sbjct: 251 SLEDRRVKRF----------IRDHVRGDTHLPRGIPLRDDQIQRRLEALGKARRPTSEEV 300 Query: 301 AFNRRSRSAKLRA 313 N R+RSA +RA Sbjct: 301 EDNPRARSAVMRA 313 >gi|282897735|ref|ZP_06305734.1| methyltransferase [Raphidiopsis brookii D9] gi|281197414|gb|EFA72311.1| methyltransferase [Raphidiopsis brookii D9] Length = 305 Score = 175 bits (444), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 113/301 (37%), Positives = 164/301 (54%), Gaps = 26/301 (8%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H+PVL E++I LN G LD T G GG+SR + N V+A+D+D AV + Sbjct: 24 HIPVLGEELIRGLNIQAGGNYLDLTVGGGGHSRLILQAADNTKVMAVDQDLDAVIAAKTR 83 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 + ++ ++ F P DG++ DLGVSS +D +RGFSF+ + LDMRM Sbjct: 84 LSEFGDRVDFLHTNFVNFP--FPPNTYDGILADLGVSSYHLDNPERGFSFRHTANLDMRM 141 Query: 138 SCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 + I+A+D+VN + ++LT I GEE+ + +IA I++ R PF TT L+ I Sbjct: 142 NQQQSITAADIVNGWDEQELTHIFFEYGEERLSRKIARRIIENR---PFSTTTQLAESIS 198 Query: 197 KTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 V + RIHPATR FQALR+ VN+E++ L L A +L GG + ++SFHSLED Sbjct: 199 SCVPPKYRYGRIHPATRVFQALRLAVNDELQVLETLLHKAPPSLVPGGKIALISFHSLED 258 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 R+VK R+ ++ V +TKK + T ++ N RSRSAKLR Sbjct: 259 RIVKH--GLRNSDLLTV---------------MTKKPITATDPEIQHNPRSRSAKLRIAQ 301 Query: 316 R 316 + Sbjct: 302 K 302 >gi|19553366|ref|NP_601368.1| S-adenosyl-methyltransferase MraW [Corynebacterium glutamicum ATCC 13032] gi|62391005|ref|YP_226407.1| S-adenosyl-methyltransferase MraW [Corynebacterium glutamicum ATCC 13032] gi|24212026|sp|Q8NNM7|RSMH_CORGL RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|21324936|dbj|BAB99559.1| Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Corynebacterium glutamicum ATCC 13032] gi|41326344|emb|CAF20506.1| S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Corynebacterium glutamicum ATCC 13032] Length = 337 Score = 175 bits (444), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 111/318 (34%), Positives = 174/318 (54%), Gaps = 28/318 (8%) Query: 20 HVPVLLEKVIALLNP-----APGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVS 72 HVPV+ +++ AL+ VI+DAT GAGG++ F + +I LDRD A+ Sbjct: 12 HVPVMRDRMAALIAEHVEALGENAVIVDATLGAGGHAEFFLNTFPKARLIGLDRDQNALR 71 Query: 73 CGQETMRDYKEQFSLFQATFSQLQ-----------DYVPDKGVDGVVFDLGVSSMQIDCG 121 + + + E+F Q F L+ D + G+ G +FDLGVSSMQ+D Sbjct: 72 DARARLAPFGERFIGVQTRFDGLREVLESVEGDIIDLAREHGIAGALFDLGVSSMQLDQV 131 Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGF+++ PLDMRM + GI+A+D++N + D+ RIL G+E+ A +IA A++K R Sbjct: 132 ERGFAYRTDAPLDMRMDATQGITAADILNTYSHGDIARILKTYGDERFAGKIASAVLKER 191 Query: 181 QSAPFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 + PF T+ L L+ + ++ HPA R+FQALR+ VNNE++ L L AL Sbjct: 192 EKEPFTTSARLVELLYDAIPAATRRTGGHPAKRTFQALRVEVNNELDSLKNVLPQITDAL 251 Query: 240 KAGGLLIVVSFHSLEDRLVKKFF----ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295 GG + +S+ S ED+LVKKFF S++ + V +P A F+ +T+ Sbjct: 252 NVGGRAVFMSYQSHEDKLVKKFFTDLTTSKTPPGLPVD--LPGTA--PQFKQVTRGAETA 307 Query: 296 TQEDVAFNRRSRSAKLRA 313 ++ ++ N R+ K+RA Sbjct: 308 SEAEIEENPRAAPVKVRA 325 >gi|239917869|ref|YP_002957427.1| S-adenosyl-methyltransferase MraW [Micrococcus luteus NCTC 2665] gi|281413637|ref|ZP_06245379.1| S-adenosyl-methyltransferase MraW [Micrococcus luteus NCTC 2665] gi|263456502|sp|C5CA38|RSMH_MICLC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|239839076|gb|ACS30873.1| S-adenosyl-methyltransferase MraW [Micrococcus luteus NCTC 2665] Length = 331 Score = 175 bits (444), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 109/309 (35%), Positives = 173/309 (55%), Gaps = 15/309 (4%) Query: 20 HVPVLLEKVIALLNPA------PGK--VILDATFGAGGYSRSFCKMGSN--VIALDRDPF 69 H+PV+ ++V+ LL PA G+ V +D T G GG++ + + VI +DRD Sbjct: 12 HLPVMRDRVVDLLAPAVQAALEAGRTPVAVDGTLGMGGHTEALLTRFPHLRVIGIDRDAH 71 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFS 126 A + E + ++ F T+ ++ + + GV D ++DLGVSS Q+D +RGF+ Sbjct: 72 AQAMAAERLGPLADRVIPFHGTYDRVPEAMAAAGVTKVDAALYDLGVSSYQLDDRERGFA 131 Query: 127 FQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 + PLDMRM + SA+ +V + + ++L RI+ GEE+ A IA AIV+ R AP Sbjct: 132 YSYDAPLDMRMDDTAERSAATLVAELDEQELRRIIRRDGEERFAGPIARAIVRARAEAPI 191 Query: 186 QTTQDLSSLIQKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 +TT L +I+ V + HPA R+FQALRI VN E++ L + + AL GG Sbjct: 192 ETTGRLVEVIRSAVPVAAGATGGHPAKRTFQALRIAVNEELDILDAAVPAILDALHVGGR 251 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 L+V+S+HSLEDR+ K+ ++ + + H V + +T+ PT+E+++ NR Sbjct: 252 LVVMSYHSLEDRITKRHLSAWATSTAPPGFPVVLEEHEPVVRVLTRGTEKPTEEEISENR 311 Query: 305 RSRSAKLRA 313 R+ SAK+RA Sbjct: 312 RASSAKVRA 320 >gi|262280350|ref|ZP_06058134.1| S-adenosylmethionine-dependent methyltransferase [Acinetobacter calcoaceticus RUH2202] gi|262258128|gb|EEY76862.1| S-adenosylmethionine-dependent methyltransferase [Acinetobacter calcoaceticus RUH2202] Length = 307 Score = 175 bits (444), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 118/311 (37%), Positives = 176/311 (56%), Gaps = 18/311 (5%) Query: 20 HVPVLLEKVI-ALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQ 75 H+ VLL + I +LL V +DATFG GG++R K+ N V A D+DP A+ Sbjct: 3 HISVLLSETIESLLADRTTGVYIDATFGRGGHTRLLLSKLDENARVYAFDKDPQALEVAA 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 T+ +F++ A+F+ +++ + + GV DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 63 -TLAQEDSRFTIIHASFADIKEKMQEIGVMSVDGIMADLGVSSPQLDQAERGFSFMQDGP 121 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G++A++ + + + L ++ GEE+ + RIA AI + + +TT L Sbjct: 122 LDMRMDNSKGLTAAEWLLKIEEEQLANVIYQYGEERYSRRIAKAI---KLAGKLETTAQL 178 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ KT + HPATR+FQA+RI +N E+E++ L A LK G L V+SFH Sbjct: 179 AEVV-KTAHPKWEKHKHPATRAFQAIRIAINKELEDIEVFLPQAVDLLKPEGRLSVISFH 237 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV--VVPTQEDVAFNRRSRSA 309 SLEDRL+K+F S +P V KK+ V ++E+V N RSRSA Sbjct: 238 SLEDRLIKQFIQKESTLAEDFGWGMPEQ---RVDTRRLKKISRVRASEEEVKANPRSRSA 294 Query: 310 KLRAGMRTVER 320 LR R E+ Sbjct: 295 WLRVAERLEEK 305 >gi|255010082|ref|ZP_05282208.1| S-adenosyl-methyltransferase MraW [Bacteroides fragilis 3_1_12] gi|313147877|ref|ZP_07810070.1| S-adenosyl-methyltransferase mraW [Bacteroides fragilis 3_1_12] gi|313136644|gb|EFR54004.1| S-adenosyl-methyltransferase mraW [Bacteroides fragilis 3_1_12] Length = 304 Score = 175 bits (444), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 109/300 (36%), Positives = 165/300 (55%), Gaps = 16/300 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HVPVLL++ + +N P +D TFG GG+SR G ++ D+D + Sbjct: 9 HVPVLLKESVDAMNITPDGTYVDVTFGGGGHSREILSRLGNGGRLLGFDQDE---DAERN 65 Query: 77 TMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + D F+ ++ F L + Y +GVD ++ DLGVSS D +RGFSF+ G L Sbjct: 66 IVND--PHFTFVRSNFRYLHNFLRYHDIEGVDSILADLGVSSHHFDDSERGFSFRFDGKL 123 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +GI+A+DVVN + L I + GE K + ++A IVK R +T + Sbjct: 124 DMRMNKRAGITAADVVNTYEEERLADIFYLYGELKNSRKLASVIVKARSGQKIETIGEFL 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +++ F + + FQALRI VN E+E L + L +A +ALK GG L+V+++HS Sbjct: 184 EVVKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLMAATEALKPGGRLVVITYHS 241 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK + + + + + P F+ + KV+VP +E++A N RSRSAKLR Sbjct: 242 LEDRMVKNIMKTGNVEGKTTQDFFGNLQTP--FRLVNNKVIVPDEEEIARNPRSRSAKLR 299 >gi|295692684|ref|YP_003601294.1| s-adenosyl-l-methionine-dependent methyltransferase mraw [Lactobacillus crispatus ST1] gi|295030790|emb|CBL50269.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Lactobacillus crispatus ST1] Length = 315 Score = 175 bits (444), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 114/312 (36%), Positives = 170/312 (54%), Gaps = 17/312 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77 H VLL + I L P G + +DATFG GG++R ++ D+D +A+ + Sbjct: 5 HTSVLLHETIDNLKPKNGGLYVDATFGGGGHARYLLSKIDTGTLVGFDQDEYAIKSAKLN 64 Query: 78 MR-----DYKEQFSLFQATFSQLQ-DYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 D + + L FS L+ D V G+DG+ +DLGVSS Q D DRGFS++ Sbjct: 65 FANLLQPDSEPRLELVHDNFSNLEKDLVKLGYSDGIDGIYYDLGVSSPQFDQADRGFSYR 124 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 LDMRM S + A +VN + K+L IL G+EK + +IAH IV+RR+ P T Sbjct: 125 YDARLDMRMDQSQDLDAYQLVNTLSQKELADILYQYGDEKFSRQIAHRIVERRREKPIAT 184 Query: 188 TQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T +L +I+ + +++ HPA +SFQALR+ VN+E++ L L A K L+ GG + Sbjct: 185 TFELVDVIKDAIPAYARRTGGHPAKKSFQALRVAVNHELDVLQASLEEAIKILRPGGRIS 244 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 V++F S ED++VK+ F S +V R M IP P + + + K +V + ++ N Sbjct: 245 VITFQSHEDKIVKRIFKKYS-EVEVPRGMPFIPDGMKPTL-RLVNHKPIVASTSELENNN 302 Query: 305 RSRSAKLRAGMR 316 RS SAKLR + Sbjct: 303 RSHSAKLRVAEK 314 >gi|145220562|ref|YP_001131271.1| S-adenosyl-methyltransferase MraW [Prosthecochloris vibrioformis DSM 265] gi|262824996|sp|A4SH10|RSMH_PROVI RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|145206726|gb|ABP37769.1| S-adenosyl-methyltransferase MraW [Chlorobium phaeovibrioides DSM 265] Length = 327 Score = 175 bits (444), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 114/312 (36%), Positives = 170/312 (54%), Gaps = 21/312 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYS--------RSFCKMGSNVIALDRDPFAV 71 H PVL + +++L PG + LD T G GG+S RS GS ++ +D+D A+ Sbjct: 9 HEPVLAPESVSMLVRGPG-LYLDGTLGGGGHSLAILCELERSGWLEGSLLLGIDQDDEAL 67 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDY----VPDKGVD----GVVFDLGVSSMQIDCGDR 123 E + DY+E + F + +G++ G++ DLGVSS Q+D R Sbjct: 68 QEAGERLADYREHAVALKGNFGNIAALSAREAGSRGMEPQASGILLDLGVSSHQLDVPLR 127 Query: 124 GFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR-Q 181 GFS+ + GPLDMRM +A+D++N A +L I GEE + IA A+ RR + Sbjct: 128 GFSYMQPGPLDMRMDSGATGTAADILNTAPEAELASIFFRYGEEPLSRVIARAVTTRRVE 187 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 PF TT +L+ L+ ++V F + + +R FQALRI VN E+E L + L LK Sbjct: 188 KGPFHTTDELADLV-RSVVFGRERVMKSLSRVFQALRIAVNQELEVLERVLGDGVMLLKP 246 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDV 300 GG + V+S+HSLEDR+VK+FF+S + + + + PA ++T K V E+V Sbjct: 247 GGRMAVISYHSLEDRMVKRFFSSLTTADWGPKGVGLREPVRPAAAIAVTGKPVRAGAEEV 306 Query: 301 AFNRRSRSAKLR 312 A N R+RSAK+R Sbjct: 307 ARNPRARSAKMR 318 >gi|325478632|gb|EGC81744.1| S-adenosyl-methyltransferase MraW [Anaerococcus prevotii ACS-065-V-Col13] Length = 306 Score = 175 bits (444), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 109/311 (35%), Positives = 168/311 (54%), Gaps = 22/311 (7%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 +H+PV+ + I LN V LD T G GG+S+ + S+ +IALD+D A+ + Sbjct: 4 EHIPVIATETIENLNIKSDGVYLDLTLGKGGHSKMILERLSDEGTLIALDQDKEAIEAAK 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E ++D+ + F ++ + + D G +DG + D+GVSS QID DRGFS+ K GP Sbjct: 64 ENLKDFS-NVIFINSNFEKIDEVLRDLGFDYIDGALMDIGVSSYQIDNADRGFSYMKDGP 122 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ ++A +VN+ + +L +I GEEK + IA I+K R+ TT L Sbjct: 123 LDMRMNQENELTAEIIVNEYSQDELEKIFFEYGEEKFSKLIAKNIIKAREDYRIDTTFKL 182 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++ K++ K+N HP R FQALRI VN E++ L + L L +++FH Sbjct: 183 KDIVTKSI---KSNEAHPEKRVFQALRIEVNRELDVLKDTIDKVVDHLNKDERLAIITFH 239 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSN------AHPAVFQSITKKVVVPTQEDVAFNRR 305 SLEDR+VK F K +A + P H A + IT+K + +++++ N R Sbjct: 240 SLEDRIVKNKF-----KDLATDCICPPEFPVCVCNHKAKVKIITRKPITASKKELKENSR 294 Query: 306 SRSAKLRAGMR 316 ++ AKLR R Sbjct: 295 AKPAKLRVCQR 305 >gi|260589610|ref|ZP_05855523.1| S-adenosyl-methyltransferase MraW [Blautia hansenii DSM 20583] gi|331083033|ref|ZP_08332152.1| ribosomal RNA small subunit methyltransferase H 2 [Lachnospiraceae bacterium 6_1_63FAA] gi|260539850|gb|EEX20419.1| S-adenosyl-methyltransferase MraW [Blautia hansenii DSM 20583] gi|330399770|gb|EGG79431.1| ribosomal RNA small subunit methyltransferase H 2 [Lachnospiraceae bacterium 6_1_63FAA] Length = 313 Score = 175 bits (444), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 103/312 (33%), Positives = 173/312 (55%), Gaps = 27/312 (8%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H VLLE+ + L P + +D T G GG+S + C+ S ++I +D+D A++ Sbjct: 5 HQSVLLEETVGNLRVKPDGIYVDGTLGGGGHSYAICQQLSAKGSLIGIDQDEAAINAAGN 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++++KEQ ++ ++ + ++ + G VDG+V DLGVSS Q+D +RGF++++ PL Sbjct: 65 RLQEFKEQVTIIRSNYCNMKRELQKIGITSVDGIVLDLGVSSYQLDNSERGFTYREDVPL 124 Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM +A ++VN+ + +L RI+ GE+K A IA I RQ +TT +L Sbjct: 125 DMRMDQRNPRTAKNIVNEYSENELYRIIRDYGEDKFAKNIAKHICMARQEKEIETTGELI 184 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I++ + + HPA ++FQA+RI +N E++ L L + L G + +++FH Sbjct: 185 EIIKRAIPMKMRAVGGHPAKKTFQAIRIELNQELDVLRNSLDDMIELLNDQGRICIITFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV----------FQSITKKVVVPTQEDVA 301 SLEDR+VK F R+ P P + IT+K ++P++E++ Sbjct: 245 SLEDRIVKTIFK---------RNENPCTCPPGFPVCVCGNQSKGKVITRKPILPSEEELE 295 Query: 302 FNRRSRSAKLRA 313 N+RS+SAKLR Sbjct: 296 MNKRSKSAKLRV 307 >gi|313114876|ref|ZP_07800375.1| S-adenosyl-methyltransferase MraW [Faecalibacterium cf. prausnitzii KLE1255] gi|310622826|gb|EFQ06282.1| S-adenosyl-methyltransferase MraW [Faecalibacterium cf. prausnitzii KLE1255] Length = 321 Score = 175 bits (444), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 112/304 (36%), Positives = 168/304 (55%), Gaps = 12/304 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-----KMGSNVIALDRDPFAVSC 73 +H+PVLL + + L+ P LD T G G+SR + G +I+LD+DP AV Sbjct: 15 EHIPVLLNECLEGLSIDPAGTYLDGTAGGAGHSRQIALRLDAEKGGRLISLDQDPDAVQT 74 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKS 130 + + ++ Q F + G+D G + DLGVSS Q+D RGFS++ Sbjct: 75 ARARLAGLPA--TVVQINFRYAGQALESLGIDKVNGALLDLGVSSHQLDDAARGFSYRAD 132 Query: 131 GPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRMS G +A+D+VN + ++L RIL GEE A +IA IV+ R+++P +TT Sbjct: 133 APLDMRMSQQGETAADLVNTESREELARILRDYGEEPFAWQIAGRIVEARENSPIETTLQ 192 Query: 191 LSSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ ++ + ++ + +P+ R+FQALRI VN+E++ L +GL + L GG L V++ Sbjct: 193 LADIVASAMPPAERRKNKNPSRRTFQALRIAVNHELDALEEGLDTIFDHLAPGGRLCVIT 252 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDRLVK F S + A + IT+K + +++ NRRSRS Sbjct: 253 FHSLEDRLVKNKFRRWSTACTCPPEFPVCVCGGKAKAKLITRKPIEANSQELEENRRSRS 312 Query: 309 AKLR 312 A LR Sbjct: 313 AHLR 316 >gi|300726283|ref|ZP_07059736.1| S-adenosyl-methyltransferase MraW [Prevotella bryantii B14] gi|299776480|gb|EFI73037.1| S-adenosyl-methyltransferase MraW [Prevotella bryantii B14] Length = 318 Score = 175 bits (444), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 113/311 (36%), Positives = 173/311 (55%), Gaps = 24/311 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDP-------F 69 HVPVLLE+ + LN PG + +D TFG GG+S S +++ + D+D + Sbjct: 9 HVPVLLEQTVNGLNIQPGGIYIDVTFGGGGHSSKILSCLDSQAHLYSFDQDADAENNIYY 68 Query: 70 AVSCGQETMRDYK----EQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGD 122 A + E +D++ +F+ ++ F +++ Y +DG++ DLGVSS D D Sbjct: 69 AEAGSNE--KDHRFIDDPRFTFVRSNFRYIKNWMRYYHVDYIDGLLADLGVSSHHFDDKD 126 Query: 123 RGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF+ PLDMRM+ + ++A+D+VN L I + GE K + +IA+A+V+ RQ Sbjct: 127 RGFSFRFDSPLDMRMNKRADMTAADIVNNYPESQLADIFYLYGELKNSRKIANALVRYRQ 186 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 + TTQD + F + R FQALRI VN+E++ L + L SA + L+ Sbjct: 187 NQKILTTQDFIKATEPL--FKREKEKKDMARLFQALRIEVNHEMDALKEMLNSATELLRP 244 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 GG L V+++HSLEDR+VK S + + V+ + P ++ I KV++P QE+ Sbjct: 245 GGRLSVITYHSLEDRIVKNVMKSGNPEGKIVKDFFGKSETP--YKLINNKVIIPDQEEQE 302 Query: 302 FNRRSRSAKLR 312 N RSRSAKLR Sbjct: 303 NNPRSRSAKLR 313 >gi|289704963|ref|ZP_06501378.1| S-adenosyl-methyltransferase MraW [Micrococcus luteus SK58] gi|289558299|gb|EFD51575.1| S-adenosyl-methyltransferase MraW [Micrococcus luteus SK58] Length = 349 Score = 175 bits (444), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 109/309 (35%), Positives = 173/309 (55%), Gaps = 15/309 (4%) Query: 20 HVPVLLEKVIALLNPA------PGK--VILDATFGAGGYSRSFCKMGSN--VIALDRDPF 69 H+PV+ ++V+ LL PA G+ V +D T G GG++ + + VI +DRD Sbjct: 30 HLPVMRDRVVDLLAPAVQAALEAGRTPVAVDGTLGMGGHTEALLTRFPHLRVIGIDRDVH 89 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFS 126 A + E + ++ F T+ ++ + + GV D ++DLGVSS Q+D +RGF+ Sbjct: 90 AQAMAAERLGPLADRLIPFHGTYDRVPEAMAAAGVTKVDAALYDLGVSSYQLDDRERGFA 149 Query: 127 FQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 + PLDMRM + SA+ +V + + ++L RI+ GEE+ A IA AIV+ R AP Sbjct: 150 YSYDAPLDMRMDDTAERSAATLVAELDEQELRRIIRRDGEERFAGPIARAIVRARDEAPI 209 Query: 186 QTTQDLSSLIQKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 +TT L +I+ V + HPA R+FQALRI VN E++ L + + AL GG Sbjct: 210 ETTGRLVEVIRSAVPVAAGATGGHPAKRTFQALRIAVNEELDILDAAVPAILDALHVGGR 269 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 L+V+S+HSLEDR+ K+ ++ + + H V + +T+ PT+E+++ NR Sbjct: 270 LVVMSYHSLEDRITKRHLSAWATSTAPPGFPVVLEEHEPVVRVLTRGTEKPTEEEISENR 329 Query: 305 RSRSAKLRA 313 R+ SAK+RA Sbjct: 330 RASSAKVRA 338 >gi|292669650|ref|ZP_06603076.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Selenomonas noxia ATCC 43541] gi|292648447|gb|EFF66419.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Selenomonas noxia ATCC 43541] Length = 310 Score = 175 bits (444), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 117/304 (38%), Positives = 162/304 (53%), Gaps = 14/304 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 HV VL E+ + LN P +D T G G++ S +I +D+D A++ QE Sbjct: 5 HVSVLPEETLNALNITPNGTYVDCTLGGAGHAGRIAARLSPEGRLIGIDQDEAAIAAAQE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + D Q +L + F L + GVD GV+FDLG+SS QID +RGFS+ + PL Sbjct: 65 RLADAACQVTLVRDNFRNLSAILAGAGVDSTDGVLFDLGISSPQIDTAERGFSYMQDAPL 124 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM +G SA VVN+ +L I GEE+ A RIA I + R++ P +TT L Sbjct: 125 DMRMDRRAGRSARSVVNEYTAAELMEIFYNYGEERWAKRIAAFIEEERKAHPIETTGQLV 184 Query: 193 SLIQKTVYFSKNNRI---HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 ++I + V K R HPA R FQA+RI VN E+ L L +A +AL+ GG L V++ Sbjct: 185 AVIDRAV--PKKTRAKGGHPAKRVFQAIRIEVNEELTILEGALTAAVRALRPGGRLAVIT 242 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VKK + + H + H + I K + E A N R++S Sbjct: 243 FHSLEDRIVKKTLKRFAQGCICPPHTPVCVCGHTPELRLIGKPQMASAVE-CAENPRAKS 301 Query: 309 AKLR 312 AKLR Sbjct: 302 AKLR 305 >gi|303228441|ref|ZP_07315274.1| S-adenosyl-methyltransferase MraW [Veillonella atypica ACS-134-V-Col7a] gi|303230798|ref|ZP_07317545.1| S-adenosyl-methyltransferase MraW [Veillonella atypica ACS-049-V-Sch6] gi|302514558|gb|EFL56553.1| S-adenosyl-methyltransferase MraW [Veillonella atypica ACS-049-V-Sch6] gi|302516943|gb|EFL58852.1| S-adenosyl-methyltransferase MraW [Veillonella atypica ACS-134-V-Col7a] Length = 310 Score = 175 bits (444), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 109/306 (35%), Positives = 162/306 (52%), Gaps = 8/306 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 +HV VLL + + + P + +D T G G++ + + S+ +I LD+D A++ + Sbjct: 4 NHVSVLLNETVDSVVTNPDGIYVDCTLGGAGHAHAVGERLSSQGMIIGLDQDEDALAVAR 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + D Q FS L+ + ++G VDG +FDLGVSS Q+D +RGFS+ GP Sbjct: 64 QRLSDLTCQVMTIPTNFSDLKHALEEQGIYEVDGFIFDLGVSSYQLDTPERGFSYMNDGP 123 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM I+A VVN+ L +I+ GEE+ A RI IV R TT +L Sbjct: 124 LDMRMDKEAPITAEIVVNEYESDKLLQIIRDYGEERWAKRIVEFIVAARNEKRITTTGEL 183 Query: 192 SSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 S+I+K + ++ + HPA R+FQA+RI VN E+ L A LK G + V++F Sbjct: 184 VSIIKKAIPAKARQDGPHPAKRTFQAIRIEVNRELAILHDSFVDAVSMLKPKGRIGVITF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDR+ K+ F S + + H K + P+ +V N RSRSAK Sbjct: 244 HSLEDRITKQTFKELSTACICPPELPVCVCHHKAVLKAKNKAIEPSAGEVEMNPRSRSAK 303 Query: 311 LRAGMR 316 LR G++ Sbjct: 304 LRVGIK 309 >gi|237749177|ref|ZP_04579657.1| S-adenosyl-methyltransferase MraW [Oxalobacter formigenes OXCC13] gi|229380539|gb|EEO30630.1| S-adenosyl-methyltransferase MraW [Oxalobacter formigenes OXCC13] Length = 319 Score = 175 bits (444), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 117/310 (37%), Positives = 179/310 (57%), Gaps = 18/310 (5%) Query: 20 HVPVLLEKVIALLNPAPGKV---ILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSC 73 H VLL++ + L +V +D TFG GG+SR ++G +IA D+DP AVS Sbjct: 6 HDSVLLKEAVDALAIEGDRVNGIFIDGTFGRGGHSRLILERLGGEGRLIAFDKDPEAVSV 65 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130 + +F + +F+ L + + +KG+ DG++ DLG+SS Q++ RGFSF+ Sbjct: 66 AGKIT---DPRFEIVHKSFADLGEVLEEKGIEMIDGILLDLGISSPQVEDAARGFSFRLE 122 Query: 131 GPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 GPLDMRM S G+SA++ + + + ++ GEE+ A +IA AIV R P +T+ Sbjct: 123 GPLDMRMDSTRGLSAAEWLAVETEEKIAEVIHQYGEERFAFQIAKAIVACRTIKPIDSTK 182 Query: 190 DLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ ++ V F K +PATR+FQA+RIF+N E+EEL GL++A + L+ G + V+ Sbjct: 183 QLAEIVAGAVKTFEKGK--NPATRTFQAIRIFINRELEELEIGLQAAWQHLRLNGRMSVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 SFHSLEDR+VKKF + ++ M R + I + P + K P++ +V+ N RSR Sbjct: 241 SFHSLEDRIVKKFLSGKAKVDMPDRRLPIRAIDLPQPEMKLLGK-QKPSKAEVSKNARSR 299 Query: 308 SAKLRAGMRT 317 SA LR R Sbjct: 300 SAILRIATRV 309 >gi|58337113|ref|YP_193698.1| S-adenosyl-methyltransferase MraW [Lactobacillus acidophilus NCFM] gi|227903687|ref|ZP_04021492.1| S-adenosyl-methyltransferase [Lactobacillus acidophilus ATCC 4796] gi|68565411|sp|Q5FKV7|RSMH_LACAC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|58254430|gb|AAV42667.1| cell division protein [Lactobacillus acidophilus NCFM] gi|227868574|gb|EEJ75995.1| S-adenosyl-methyltransferase [Lactobacillus acidophilus ATCC 4796] Length = 315 Score = 175 bits (443), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 110/312 (35%), Positives = 172/312 (55%), Gaps = 17/312 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77 H VLL + I L P + +DATFG GG+++ +I D+D +A+ + Sbjct: 5 HTSVLLHETIDNLKPKNDGLYVDATFGGGGHAKYLLSKIDTGTLIGFDQDEYAIKSAELN 64 Query: 78 MR-----DYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 D + + L FS L++ + G+DG+ +DLGVSS Q D DRGFS++ Sbjct: 65 FANLLKPDSEPKLQLVHDNFSNLEENLVKLGYTDGIDGIYYDLGVSSPQFDQADRGFSYR 124 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + LDMRM+ + A +VN + K+L IL G+EK + +IAH IV++R+ P T Sbjct: 125 YNARLDMRMNQDQDLDAYQLVNTLSQKELADILYQYGDEKFSRQIAHKIVEKRKEKPIVT 184 Query: 188 TQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T +L +I+ + +++ HPA +SFQALR+ VN+E++ L L A K L+ GG + Sbjct: 185 TFELVDIIKDAIPAYARRTGGHPAKKSFQALRVAVNHELDVLQASLEEAIKVLRPGGRIS 244 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 V++F S ED++VKK F S +V R M IP + P + + + +K +V + ++ N Sbjct: 245 VITFQSHEDKIVKKIFKKYS-EVEVPRGMPFIPDDMKPTL-KLVNRKPIVASDSELENNN 302 Query: 305 RSRSAKLRAGMR 316 RS SAKLR + Sbjct: 303 RSHSAKLRVAEK 314 >gi|224436850|ref|ZP_03657839.1| S-adenosyl-methyltransferase MraW [Helicobacter cinaedi CCUG 18818] gi|313143328|ref|ZP_07805521.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Helicobacter cinaedi CCUG 18818] gi|313128359|gb|EFR45976.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Helicobacter cinaedi CCUG 18818] Length = 311 Score = 175 bits (443), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 114/305 (37%), Positives = 173/305 (56%), Gaps = 16/305 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 H VL +V+ LN G VI D T G GG++ S + N+ A DRD A+S ++ Sbjct: 3 HFSVLKNEVLEALNLESGAVI-DCTLGYGGHTLSLLEQNPNIHIYAFDRDESALSLAKQR 61 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + Y + + F+ D + ++ V G++ D+GVSSMQ+D RGFSF S LD Sbjct: 62 LAPYASRLHIQHCAFANALDSLGNEQLARVRGILADIGVSSMQLDDKHRGFSF-TSNNLD 120 Query: 135 MRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM S ++A+ V+N + L I I GE +Q+ ++ IV R+ PF++ +LS Sbjct: 121 MRMDSTQNLNAAKVINTYSAMRLEEIFRIYGEIRQSKKLTELIVSTREKKPFESALELSE 180 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL----LIVVS 249 LI++ +F + IHPAT +FQALRI VN E+E+L L+S E A G L + ++S Sbjct: 181 LIER--HFPRIGGIHPATLAFQALRIEVNGELEQLQTLLQSIESAFINGVLYDCKVAIIS 238 Query: 250 FHSLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 FHSLEDR++K+ F ++S K + A+ +TKK ++P++ ++ N+RSR Sbjct: 239 FHSLEDRIIKQTFKQWAKSCKCGENALKCECGNNNALGSILTKKPILPSETEIIQNKRSR 298 Query: 308 SAKLR 312 SAKLR Sbjct: 299 SAKLR 303 >gi|227824963|ref|ZP_03989795.1| S-adenosyl-methyltransferase mraW [Acidaminococcus sp. D21] gi|226905462|gb|EEH91380.1| S-adenosyl-methyltransferase mraW [Acidaminococcus sp. D21] Length = 311 Score = 175 bits (443), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 107/311 (34%), Positives = 173/311 (55%), Gaps = 21/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VLL + + + P + +D T G G+S + + +I +D+D A+ + Sbjct: 7 HKSVLLRESVDWIVTDPKGIYVDCTLGGAGHSHAIAEELDPEGLLIGIDQDEDAIMAASK 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + D + + + F L + + VDG+ FDLGVSS Q+D +RGFS+ GPL Sbjct: 67 RLEDAACKVKIVHSNFRNLGTILEGLNLQEVDGIFFDLGVSSYQLDTPERGFSYMHDGPL 126 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM G ++A+DVVN +DL ++ GEE+ + RIA IV++R+ P +TT DL Sbjct: 127 DMRMDQEGKLTAADVVNTYKEEDLADLIYKYGEERWSRRIAQFIVEKRKEKPLRTTSDLV 186 Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 S+I+ + ++ + HPA R+FQA+RI VN+E++ L + +A K LK GG + V++FH Sbjct: 187 SVIKAAIPKKARQDGPHPAKRTFQAIRIEVNDELKILDSTMETAVKHLKKGGRIGVITFH 246 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSN------AHPAVFQSITKKVVVPTQEDVAFNRR 305 SLEDR++K+ F K MA + P H + + K +P++ ++ N R Sbjct: 247 SLEDRIIKQSF-----KRMAKGCICPPELPVCVCGHKPELKKL--KEFIPSETELEDNPR 299 Query: 306 SRSAKLRAGMR 316 +RSA+LR ++ Sbjct: 300 ARSARLRGAIK 310 >gi|262831569|sp|A0PTJ6|RSMH_MYCUA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 345 Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 116/315 (36%), Positives = 174/315 (55%), Gaps = 18/315 (5%) Query: 20 HVPVLLEKVIALLNPAPGK--------VILDATFGAGGYSRSFCKM--GSNVIALDRDPF 69 HVPVL ++ + LL PA + V++DAT GAGG++ F G +I LDRDP Sbjct: 15 HVPVLAQRCVELLRPALTRHHADGSEAVLVDATIGAGGHAERFLTELPGLRLIGLDRDPS 74 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSSMQIDCGDR 123 A+ + + + ++ +L + L + + G +DG +FDLGVSSMQ+D +R Sbjct: 75 ALEIVRTRLARFTDRVTLVHTRYDGLASALTELGYGAAQSIDGALFDLGVSSMQLDQAER 134 Query: 124 GFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GF++ K PLDMRM+ S +S +D++N + L IL GEE+ A RIA I++RR Sbjct: 135 GFAYSKDAPLDMRMNPQSALSGADIINTYDEAALADILHRYGEERFARRIAARIIRRRAD 194 Query: 183 APFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 PF TT +L +L+ + + ++ HPA R+FQALRI VN+E+ L + +A AL Sbjct: 195 RPFTTTAELVALLYEAIPAAARRTGGHPAKRTFQALRIAVNDELGSLRSAVPAAMDALAV 254 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 GG ++V+++ SLEDR+VK+ FA V + H F+S+T +V Sbjct: 255 GGRIVVMAYQSLEDRIVKRVFADAVASRTPVDLPVELPGHGPRFRSLTHGAERADAAEVE 314 Query: 302 FNRRSRSAKLRAGMR 316 N RS +LRA R Sbjct: 315 HNPRSAPVRLRALQR 329 >gi|326693783|ref|ZP_08230788.1| 16S rRNA m(4)C1402 methyltranserfase [Leuconostoc argentinum KCTC 3773] Length = 313 Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 112/312 (35%), Positives = 173/312 (55%), Gaps = 18/312 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76 +HV VLL + +ALL+ P + +DAT G GG++ K + + D+D A+ Q Sbjct: 5 EHVTVLLHEAVALLDIKPDGLYVDATLGGGGHTGEILKQLTTGTLYSFDQDDTAI---QY 61 Query: 77 TMRDYKEQFS-----LFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQ 128 + Y ++ + L F L+ + ++GV DG+V+DLGVSS+Q D G RGFS+ Sbjct: 62 NTKQYADEIAAGKLVLIHQNFRTLKSALAERGVTAVDGIVYDLGVSSVQFDDGQRGFSYN 121 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 LDMRM ++A +VN DL RIL GE++ +IA I + R++ P T Sbjct: 122 YDAELDMRMDQRQTLTAKTIVNDWPFNDLLRILSRYGEDRFPKQIARKIEQHRENGPINT 181 Query: 188 TQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T +L +I++ + ++ HPA R+FQALRI VN+E+ L L A L G + Sbjct: 182 TFELVDIIKEAIPAPARRKGGHPAKRTFQALRIAVNDELGALEDSLTQAIDLLAPDGRIS 241 Query: 247 VVSFHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 V++F SLEDRLVK+ F ++ ++ A ++P A + +T+K ++P Q+++A N Sbjct: 242 VITFQSLEDRLVKQMFREKTTAPELPAGLPVLPGQFE-ADYTLLTRKPILPGQDEMADNH 300 Query: 305 RSRSAKLRAGMR 316 RS SAKLR R Sbjct: 301 RSESAKLRGIAR 312 >gi|163854995|ref|YP_001629293.1| S-adenosyl-methyltransferase MraW [Bordetella petrii DSM 12804] gi|263445873|sp|A9I4S5|RSMH_BORPD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|163258723|emb|CAP41022.1| methyltransferase [Bordetella petrii] Length = 363 Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 114/307 (37%), Positives = 182/307 (59%), Gaps = 15/307 (4%) Query: 39 VILDATFGAGGYSRSFCK-MG--SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95 V +D TFG GG+SR + +G + ++ D+DP A++ E + + ++ F+ + Sbjct: 46 VFVDGTFGRGGHSRELLRRLGPEARLVVFDKDPQAIAVANE-LAAGDARVTVVHGGFAAM 104 Query: 96 QDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQA 151 ++ + +G+ DGV+ DLGVSS Q+D RGFSF + GPLDMRM + G + +D + QA Sbjct: 105 REELAARGIESIDGVMLDLGVSSPQLDDAGRGFSFMREGPLDMRMDTTRGPTVADWLAQA 164 Query: 152 NVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPAT 211 +V ++ ++ GEE+ A ++A AI RR + P +TT +L+ + V + + HPAT Sbjct: 165 SVDEMREVIADYGEERFAFQVAKAIAARRATRPLRTTLELAECVASAVRTREKGQ-HPAT 223 Query: 212 RSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMA 271 R+FQALRI++N E+EEL++ L SA + L GG L V+SFHSLEDR+VK+ A+ + +A Sbjct: 224 RTFQALRIYINRELEELSRALASALELLAPGGRLAVISFHSLEDRMVKQCIAAAARPAVA 283 Query: 272 VRHMI--PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDDSFVH 329 + S +++S+ + V E++A N R+RSA LR RT E D + Sbjct: 284 HARLPLRESELPQPLYRSLGR--VQADDEEIAGNARARSAVLRVAERTTEPLGADGAAAF 341 Query: 330 LP--RLP 334 +P R+P Sbjct: 342 VPAMRVP 348 >gi|167765841|ref|ZP_02437894.1| hypothetical protein CLOSS21_00332 [Clostridium sp. SS2/1] gi|167712558|gb|EDS23137.1| hypothetical protein CLOSS21_00332 [Clostridium sp. SS2/1] gi|291559197|emb|CBL37997.1| S-adenosyl-methyltransferase MraW [butyrate-producing bacterium SSC/2] Length = 312 Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 101/311 (32%), Positives = 173/311 (55%), Gaps = 19/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+ VLL++ I L+ P + +D T G GG++ C+ S I +D+D A++ + Sbjct: 5 HISVLLDETIEELHIKPDGIYVDGTLGGGGHAYHVCQKLSEKGRYIGIDQDADAIAASTK 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + +K++ ++ + + + + D G VDG++ DLGVSS Q+D +RGF++++ PL Sbjct: 65 RLEPFKDKVTIVRDNYVNMPKVLHDLGIEHVDGILLDLGVSSFQLDEKERGFTYREDVPL 124 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM ++A D+VN+ + +L I+ GEEK A IA IV +R+ +P +TT L Sbjct: 125 DMRMDQRQSLTARDIVNEYSEMELFHIIRDYGEEKFAKNIAKHIVNKRKESPIETTGQLI 184 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + + HPA ++FQA+RI N E++ L + + L GG L +++FH Sbjct: 185 EVIKGAIPMKVRAVGGHPAKKTFQAIRIECNRELDVLKDSIDAMIDLLNPGGRLCIITFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF------QSITKKVVVPTQEDVAFNRR 305 SLEDR+VK+ F P N V + +T+K ++P +E++ +N+R Sbjct: 245 SLEDRIVKRAFKKNENPCTC-----PPNFPVCVCGNVSKGKQLTRKPIIPGEEELEYNKR 299 Query: 306 SRSAKLRAGMR 316 ++S+KLR R Sbjct: 300 AKSSKLRVFER 310 >gi|325684346|gb|EGD26515.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 314 Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 111/307 (36%), Positives = 171/307 (55%), Gaps = 16/307 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77 H VLL + I L P G +DATFG GG++R N+I D+D +A+ Q Sbjct: 5 HTSVLLHETIDNLAPQSGGTYVDATFGGGGHARYLLSKLDKGNLIGFDQDQYAIDTAQSN 64 Query: 78 M-----RDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 D + + L FS L++ + G+DG+ +DLGVSS Q+D +RGFS++ Sbjct: 65 FAAFLKEDSQPRLQLVHNNFSHLKEELAKLGISGIDGIYYDLGVSSPQLDQAERGFSYRF 124 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM S A +VNQ + K L +L G+EK + +IA IV+RR+ P +TT Sbjct: 125 DARLDMRMDQSQDFDAYQLVNQYDQKQLADVLYRYGDEKFSRQIARKIVERRRVKPIETT 184 Query: 189 QDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L +I++ + ++ + HPA +SFQA+R+ VN+E++ L L A L GG + V Sbjct: 185 FELVEIIKEAIPAAARRSGGHPAKKSFQAIRVEVNHELDVLRASLEEAISLLNPGGRISV 244 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 ++F S ED++VK+ F S +V R M +P P + + + +K + ++E++A N R Sbjct: 245 ITFQSSEDKIVKQTFKKYS-EVEIPRGMPVVPEGIKPTL-RLVNRKPITASEEELAENNR 302 Query: 306 SRSAKLR 312 S SAKLR Sbjct: 303 SHSAKLR 309 >gi|308807246|ref|XP_003080934.1| MRAW_PARUW S-adenosyl-methyltransferase mraW ref|YP_007310.1| probable S-ade (ISS) [Ostreococcus tauri] gi|116059395|emb|CAL55102.1| MRAW_PARUW S-adenosyl-methyltransferase mraW ref|YP_007310.1| probable S-ade (ISS) [Ostreococcus tauri] Length = 370 Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 112/318 (35%), Positives = 172/318 (54%), Gaps = 27/318 (8%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCGQE 76 H V+++++++ + +D T GAGG++++ + + I D D A + + Sbjct: 50 HYSVMMDEILSAFRDVELRAHVDGTLGAGGHAQAMIRTHPEMEHFIGFDVDASAHAIARP 109 Query: 77 TMRDYKE----------QFSLFQATFSQLQDY------VPDKGVDGVVFDLGVSSMQIDC 120 + +E + SL +A F Q+ + G+DGVV DLGVSSM +D Sbjct: 110 RLERAREDARGGEAGALKVSLVEANFRQMAQALEAMGGIHRAGIDGVVLDLGVSSMHLDR 169 Query: 121 GDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFSF GPLDMRM S SA ++VN +++ RIL GEE+ +A I +R Sbjct: 170 AERGFSFMNDGPLDMRMGPSAKTSAEEIVNAWPEEEIGRILRDYGEERHWRLLAKRICER 229 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 R + TT++L + K IHPATR+FQ +RI VN+E+ + + +A +AL Sbjct: 230 RAAKAITTTRELVDALGNVP--GKWGSIHPATRTFQGIRIAVNDELGAVEDVIPAAIEAL 287 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAV-----RHMIPSNAHPAVFQSITKKVVV 294 + GG L ++SFHSLED +VKK F +G+ + R+M P V + IT+K +V Sbjct: 288 RPGGRLAIISFHSLEDSIVKKKFRFYAGQAEPLGETFNRYMDQPEKPPKVVKLITRKPLV 347 Query: 295 PTQEDVAFNRRSRSAKLR 312 P+ ++V N RSRSAKLR Sbjct: 348 PSVDEVDENVRSRSAKLR 365 >gi|260550822|ref|ZP_05825029.1| S-adenosylmethionine-dependent methyltransferase [Acinetobacter sp. RUH2624] gi|260406132|gb|EEW99617.1| S-adenosylmethionine-dependent methyltransferase [Acinetobacter sp. RUH2624] Length = 307 Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 122/311 (39%), Positives = 175/311 (56%), Gaps = 26/311 (8%) Query: 20 HVPVLL-EKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAV---- 71 H+ VLL E V +LL V +DATFG GG++R K+ N V A D+DP A+ Sbjct: 3 HISVLLFETVESLLADRTTGVYIDATFGRGGHTRLLLSKLDENARVYAFDKDPQALEVAG 62 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQ 128 + QE R F++ A+F+ +++ + + GV DG++ DLGVSS Q+D +RGFSF Sbjct: 63 ALAQEDPR-----FTIIHASFADIKEKMQEIGVQSVDGIMADLGVSSPQLDQAERGFSFM 117 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM S G++A++ + + + L I+ GEE+ + RIA AI +Q+ T Sbjct: 118 QDGPLDMRMDNSKGLTAAEWLLEIEEEQLANIIYQYGEERYSRRIAKAI---KQAGKLDT 174 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T L+ L+ KT + HPATR+FQA+RI +N E++++ L A LK G L V Sbjct: 175 TAQLAELV-KTAHPKWEKHKHPATRTFQAIRIAINKELDDIEVFLPQAVDLLKPKGRLSV 233 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV--VVPTQEDVAFNRR 305 +SFHSLEDRL+K+F S +P V KK+ V ++E+V N R Sbjct: 234 ISFHSLEDRLIKQFIQKESTLAEDSGWGMPQQ---QVDTRRLKKISRVRASEEEVKANPR 290 Query: 306 SRSAKLRAGMR 316 SRSA LR R Sbjct: 291 SRSAWLRVAER 301 >gi|260102637|ref|ZP_05752874.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Lactobacillus helveticus DSM 20075] gi|260083561|gb|EEW67681.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Lactobacillus helveticus DSM 20075] Length = 330 Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 116/313 (37%), Positives = 173/313 (55%), Gaps = 19/313 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76 H VLL + I L P G + +DATFG GG+++ S + G+ ++ D+D +A+ + Sbjct: 20 HTSVLLHETIDNLKPKNGGLYVDATFGGGGHAKYLLSKIETGT-LVGFDQDEYAIKSAEL 78 Query: 77 TMRDY-----KEQFSLFQATFSQL-QDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSF 127 D + + L FS L QD V G+DG+ +DLGVSS Q D DRGFS+ Sbjct: 79 NFADLLQPDSEPRLKLVHDNFSNLEQDLVKLGYSDGIDGIYYDLGVSSPQFDQADRGFSY 138 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + + LDMRM S A +VN + K+L IL G+EK + +IAH IV+RR+ P Sbjct: 139 RYNARLDMRMDQSQDTDAYQLVNTLSQKELADILYQYGDEKFSRQIAHRIVERRKDKPIV 198 Query: 187 TTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT +L +I++ + +++ HPA +SFQALR+ VN+E++ L L A + L+ GG + Sbjct: 199 TTFELVDIIKEAIPAYARRTGGHPAKKSFQALRVAVNHELDVLQASLEEAIRILRPGGRI 258 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFN 303 V++F S ED++VKK F S +V R M +P + P + K + T E + N Sbjct: 259 SVITFQSHEDKIVKKIFKKYS-EVEVPRGMPFVPDDMKPTLRLENRKPITASTSE-LENN 316 Query: 304 RRSRSAKLRAGMR 316 RS SAKLR + Sbjct: 317 NRSHSAKLRVAEK 329 >gi|225028107|ref|ZP_03717299.1| hypothetical protein EUBHAL_02377 [Eubacterium hallii DSM 3353] gi|224954577|gb|EEG35786.1| hypothetical protein EUBHAL_02377 [Eubacterium hallii DSM 3353] Length = 315 Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 108/316 (34%), Positives = 176/316 (55%), Gaps = 25/316 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76 H ++LE+VI L P + +D T G G+S K +G + +I +D+D A+ + Sbjct: 5 HKSIMLEEVIESLAIKPNGIYVDGTLGGAGHSSEIVKRLGEDGRLIGIDQDGEAIEAATK 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ YK++ ++ ++ ++Q+++ + D G VDG++ DLGVSS Q+D +RGF++++ PL Sbjct: 65 RLKPYKDKVTIVRSNYAQMKEVLRDLGIPKVDGILLDLGVSSYQLDNAERGFTYREDVPL 124 Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM +A D+VN + +L I+ GE+K A IA IV+ RQ P +TT L Sbjct: 125 DMRMDQRQTKTAKDIVNDYSEMELYHIIRNYGEDKFAKNIAKHIVQARQKTPIETTGQLI 184 Query: 193 SLIQKTVYFSKNNRI---HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 +I+ + K R HPA ++FQA+RI +N+E++ L L L G + +++ Sbjct: 185 EVIKAAI--PKKVRATGGHPAKKTFQAIRIELNHELDVLKNNLEDMIDLLNDEGRIAIIT 242 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF-------QSITKKVVVPTQEDVAF 302 FHSLEDR+VK F + + R I P + IT+K +VP +E++ Sbjct: 243 FHSLEDRIVKNIFRT------SERPCICPPEFPVCVCGRVSKGKVITRKPIVPGKEELEE 296 Query: 303 NRRSRSAKLRAGMRTV 318 N RS+SAKLR R + Sbjct: 297 NSRSKSAKLRVFERRI 312 >gi|21672883|ref|NP_660948.1| hypothetical protein CT0042 [Chlorobium tepidum TLS] gi|25090698|sp|Q8KGC6|RSMH_CHLTE RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|21645935|gb|AAM71290.1| conserved hypothetical protein [Chlorobium tepidum TLS] Length = 318 Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 114/313 (36%), Positives = 174/313 (55%), Gaps = 26/313 (8%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM------GSNVIALDRDPFAVSC 73 H PVL + ++LL PG + +D T G GG+S + S ++ +D+D A+ Sbjct: 7 HEPVLARESVSLLVTLPG-IYIDGTLGGGGHSLQLLRHLQTLNGDSLLVGIDQDTHALEA 65 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD--KG------VDGVVFDLGVSSMQIDCGDRGF 125 + + ++ ++ L + F +++ V +G V G + DLGVSS QID +RGF Sbjct: 66 AGKKLGEFGDRRRLVRGNFGMVKELVEPMMRGAGNGLPVMGFLLDLGVSSFQIDTPERGF 125 Query: 126 SFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 S+ K GPLDMRM G ++A+D+VN L ++ GEE RIA AIV R SAP Sbjct: 126 SYLKDGPLDMRMDPDGPLTAADIVNGYEEAALAKLFFRYGEEPLGGRIARAIVSARSSAP 185 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 TT +L+ +I+ K+ I +R +QALRI VN+E+ L Q L + L +GG Sbjct: 186 LTTTGELAEVIRAACP-RKDLAIKTLSRIYQALRIEVNDELGVLEQALEDGFELLSSGGR 244 Query: 245 LIVVSFHSLEDRLVKKFFASRSG-----KVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 V+S+HSLEDR+VK+FFA+++ K +A+R + PA + +K + T E+ Sbjct: 245 FAVISYHSLEDRIVKRFFAAKTSADWGPKGLALREPL----KPAEAVLVVRKPLEATAEE 300 Query: 300 VAFNRRSRSAKLR 312 ++ N RSRSA+LR Sbjct: 301 ISRNPRSRSARLR 313 >gi|192361777|ref|YP_001983393.1| S-adenosyl-methyltransferase MraW [Cellvibrio japonicus Ueda107] gi|263445770|sp|B3PCM8|RSMH_CELJU RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|190687942|gb|ACE85620.1| S-adenosyl-methyltransferase MraW [Cellvibrio japonicus Ueda107] Length = 309 Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 111/301 (36%), Positives = 169/301 (56%), Gaps = 10/301 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 HV VLL + + L P +D TFG GG+S + ++ ++A+D+D A++ +E Sbjct: 6 HVTVLLGEAVEALVSNPEGTYIDGTFGRGGHSALILQHLASEGRLLAIDKDLAAIATARE 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +F++ +F+ L++ ++G V G++ DLGVSS Q+D +RGFSF + GP Sbjct: 66 KF-ATDARFAIAHDSFASLKNLAAERGLVGRVQGILLDLGVSSPQLDEAERGFSFMQDGP 124 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G SA++ VN A+ ++ +L GEE+ A R+A AI+ RQ PF T L Sbjct: 125 LDMRMDQTRGPSAAEWVNTASEDEIAWVLREYGEERFAKRMARAIIAERQKRPFVRTGHL 184 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +I+ + + HPATR+FQA+RI VN E+E+L L A L GG L+V+SFH Sbjct: 185 AEVIKAANPAWEKGK-HPATRAFQAIRIQVNRELEDLEAVLAQAVDVLAPGGRLVVISFH 243 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDRLVK+F + + + A K + + ++V N RSRSA + Sbjct: 244 SLEDRLVKRFIRQQEQGDPVPKGLPLREAQLNKTMRSLGKAMKASDQEVEANVRSRSAVM 303 Query: 312 R 312 R Sbjct: 304 R 304 >gi|163790543|ref|ZP_02184972.1| S-adenosyl-methyltransferase MraW [Carnobacterium sp. AT7] gi|159874146|gb|EDP68221.1| S-adenosyl-methyltransferase MraW [Carnobacterium sp. AT7] Length = 318 Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 110/309 (35%), Positives = 174/309 (56%), Gaps = 13/309 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVS 72 T +H VLL + + L+ +P + +D T G G+S S ++ A D+D A+ Sbjct: 2 TAFNHETVLLRETVDGLSLSPEGIYVDCTLGGAGHSEYLLSQLNEKGHLYAFDQDDRALE 61 Query: 73 CGQETMRDYKEQ--FSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSF 127 + + +Y E+ + +A F ++D + + G VDG+++DLGVSS Q+D +RGFS+ Sbjct: 62 NAKIRLAEYVEKGMVTFIKANFRYIKDELANLGIKEVDGILYDLGVSSPQLDEAERGFSY 121 Query: 128 QKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + PLDMRM ++A +V+N+ + DL RI GEEK + +IA I R+ + Sbjct: 122 HQDAPLDMRMDTDAPLTAKEVINEWSYHDLIRIFYRYGEEKFSKQIARKIEAAREIKLIE 181 Query: 187 TTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT +L LI+ + ++ HPA R FQA+RI VN+E+ + L A + L GG + Sbjct: 182 TTSELVELIKAGIPAPARRKGGHPAKRVFQAVRIAVNDELSSVEDSLEQAIELLAIGGRI 241 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFN 303 V+SFHSLEDR+VK F S R + +P P + + IT+K ++P+++++ N Sbjct: 242 SVISFHSLEDRIVKSIFKDHSKGPELPRGLPVVPDGFLPEL-KLITRKPILPSEQELEVN 300 Query: 304 RRSRSAKLR 312 RSRSAKLR Sbjct: 301 NRSRSAKLR 309 >gi|294506454|ref|YP_003570512.1| S-adenosyl-methyltransferase mraW [Salinibacter ruber M8] gi|294342782|emb|CBH23560.1| S-adenosyl-methyltransferase mraW [Salinibacter ruber M8] Length = 336 Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 115/324 (35%), Positives = 176/324 (54%), Gaps = 22/324 (6%) Query: 20 HVPVLLEKVIA-LLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 H PVL V A L+ A G+ + DAT G GG++R+ + V+ +DRDP A+ + Sbjct: 24 HAPVLSHDVQARLVTDASGRYV-DATLGGGGHARALLDVLDPDGVVLGIDRDPEALETAR 82 Query: 76 ETMRDYKE--QFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + D +E +F TF L+D + + +DG++ DLGVSS QID +RGFSF+ Sbjct: 83 DRLADEREAGRFWAVHGTFGNLRDVLAAEDLIPIDGLLLDLGVSSHQIDVPERGFSFRDE 142 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 GPLDMRM G++A +VN +DL +L GEE +A +IA A+ R P TT+ Sbjct: 143 GPLDMRMDPQRGLTAQQIVNGWGERDLRDVLREYGEESRAGQIARALCDAR---PLDTTR 199 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +++ V + + TR FQALRI VN E++EL Q L A + ++ GG + +S Sbjct: 200 ALAEVVEDCV--PPPDTVKTLTRVFQALRIAVNAELDELEQALEQATEVVRTGGRIAAIS 257 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 +HSLEDR VK++ + + R + + P + + + + +V N R+RSA Sbjct: 258 YHSLEDRRVKRYLRYGNFEGEPRRDLYGTLVAP--WAETPRGPIEAGESEVEANPRARSA 315 Query: 310 KLRAGMRTVERSIEDDSFVHLPRL 333 L R ER +D++ LP L Sbjct: 316 HL----RVAERRDDDEAGAPLPPL 335 >gi|257125535|ref|YP_003163649.1| S-adenosyl-methyltransferase MraW [Leptotrichia buccalis C-1013-b] gi|257049474|gb|ACV38658.1| S-adenosyl-methyltransferase MraW [Leptotrichia buccalis C-1013-b] Length = 308 Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 109/306 (35%), Positives = 173/306 (56%), Gaps = 10/306 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQE 76 H PVL ++V+ + V +D T G GG++ + S V+A+D+D A+ ++ Sbjct: 4 HKPVLFDEVMDNIITDKDAVYVDCTLGGGGHTEGILENSSKNSKVVAIDQDVQAIEFAKK 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + Y + +FQ F + V G VD ++ D+GVSS Q+D RGFS++ L Sbjct: 64 RLEKYANKLQIFQDNFRNIDTAVYLAGFEKVDRILMDIGVSSNQLDNAKRGFSYRFEARL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + ISA +V+N + K+L I+ GEE ++ +IA IV+ R+ +TT +L+ Sbjct: 124 DMRMDSNLKISAYEVINNFSEKELADIIYKYGEEPKSRKIAKKIVEYRKIKAIETTTELA 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++ K++ K+ + HPA R+FQA+RIFVN E+E L++ L A K L G L+V++FHS Sbjct: 184 DIVIKSI--GKSMKRHPAKRTFQAIRIFVNKELEILSETLDKAVKLLGKNGKLLVITFHS 241 Query: 253 LEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK+ F + I ++ + ITKK +V + ++A N R+ SAKL Sbjct: 242 LEDRIVKEKFREYENPCTCPPDIPICVCGKQSLGKVITKKPIVAKELELAENNRAHSAKL 301 Query: 312 RAGMRT 317 R R+ Sbjct: 302 RIFERS 307 >gi|73662901|ref|YP_301682.1| S-adenosyl-methyltransferase MraW [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|88909221|sp|Q49WW1|RSMH_STAS1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|72495416|dbj|BAE18737.1| putative methyltransferase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 311 Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 106/305 (34%), Positives = 168/305 (55%), Gaps = 11/305 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQE 76 HV V+L++ I LN V +D T G G++ ++G +IA+D+D A+ +E Sbjct: 4 HVSVMLKETIDYLNIKEDGVYVDCTLGGAGHALYLLNQLGDEGRLIAIDQDTTAIENAKE 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++++ + + F ++ + + D + VDG+ +DLGVSS Q+D +RGFS+ L Sbjct: 64 VLKEHLHKVTFVHNNFRKITEILNDLNIEKVDGIYYDLGVSSPQLDVPERGFSYHHDAKL 123 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM +SA +VVN+ + L RI GEEK + +IA I + R+ P +TT +L Sbjct: 124 DMRMDQTQSLSAFEVVNEWEFEKLVRIFHRYGEEKFSKQIARRIEQNREQKPIETTLELV 183 Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I++ + ++ HPA R FQA+RI VN+E+ L A A+K G + V++FH Sbjct: 184 DVIKEGIPAKARRKGGHPAKRIFQAIRIAVNDELSAFEDSLEQAIDAVKMDGRISVITFH 243 Query: 252 SLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDRL K+ F R + IP P + + + +K ++ T ED+ N R+RSA Sbjct: 244 SLEDRLCKQMFQEYEKGPDVPRGLPVIPEAYTPKL-KRVNRKPIIATDEDLEENNRARSA 302 Query: 310 KLRAG 314 KLR Sbjct: 303 KLRVA 307 >gi|282859045|ref|ZP_06268181.1| S-adenosyl-methyltransferase MraW [Prevotella bivia JCVIHMP010] gi|282588213|gb|EFB93382.1| S-adenosyl-methyltransferase MraW [Prevotella bivia JCVIHMP010] Length = 319 Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 112/304 (36%), Positives = 174/304 (57%), Gaps = 15/304 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYS---RSFCKMGSNVIALDRDPFA---VSC 73 H+PVLL + I LN G + +D TFG GG+S S +G ++ + D+D A ++ Sbjct: 9 HIPVLLNESIEGLNIHTGGIYVDVTFGGGGHSGEILSRLPVGCHLYSFDQDLDAEQNLNH 68 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQ-K 129 E ++ ++F+ ++ F L++++ GV DG++ DLGVSS D RGFSF+ + Sbjct: 69 LTEKSKELNDKFTFVRSNFRYLKNWMRYYGVEKIDGLLADLGVSSHHFDDETRGFSFRFE 128 Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM+ + +AS+++N+ DL + + GE KQ+ RIA AIVK R + +TT Sbjct: 129 EAPLDMRMNKNAHKTASNILNEYEEDDLANLFYLYGELKQSRRIASAIVKARTNQTIKTT 188 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 D +++ F + + FQALRI VN+E+E L + L SA + L GG L V+ Sbjct: 189 TDFLKIVEPL--FIRAREKKDMAKLFQALRIEVNHEMEALKEMLASATELLSPGGRLSVI 246 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 ++HSLEDR+VK F + + + + P F+ + KV+V T+E++ N RSRS Sbjct: 247 TYHSLEDRIVKNFMKAGNAEGKVTQDFFGRIETP--FKLVNNKVIVATEEELEKNPRSRS 304 Query: 309 AKLR 312 AKLR Sbjct: 305 AKLR 308 >gi|161507311|ref|YP_001577265.1| cell division protein MraW [Lactobacillus helveticus DPC 4571] gi|263458154|sp|A8YUN6|RSMH_LACH4 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|160348300|gb|ABX26974.1| Cell division protein MraW [Lactobacillus helveticus DPC 4571] Length = 315 Score = 174 bits (442), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 116/313 (37%), Positives = 173/313 (55%), Gaps = 19/313 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76 H VLL + I L P G + +DATFG GG+++ S + G+ ++ D+D +A+ + Sbjct: 5 HTSVLLHETIDNLKPKNGGLYVDATFGGGGHAKYLLSKIETGT-LVGFDQDEYAIKSAEL 63 Query: 77 TMRDY-----KEQFSLFQATFSQL-QDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSF 127 D + + L FS L QD V G+DG+ +DLGVSS Q D DRGFS+ Sbjct: 64 NFADLLQPDSEPRLKLVHDNFSNLEQDLVKLGYSDGIDGIYYDLGVSSPQFDQADRGFSY 123 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + + LDMRM S A +VN + K+L IL G+EK + +IAH IV+RR+ P Sbjct: 124 RYNARLDMRMDQSQDTDAYQLVNTLSQKELADILYQYGDEKFSRQIAHRIVERRKDKPIV 183 Query: 187 TTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT +L +I++ + +++ HPA +SFQALR+ VN+E++ L L A + L+ GG + Sbjct: 184 TTFELVDIIKEAIPAYARRTGGHPAKKSFQALRVAVNHELDVLQASLEEAIRILRPGGRI 243 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFN 303 V++F S ED++VKK F S +V R M +P + P + K + T E + N Sbjct: 244 SVITFQSHEDKIVKKIFKKYS-EVEVPRGMPFVPDDMKPTLRLENRKPITASTSE-LENN 301 Query: 304 RRSRSAKLRAGMR 316 RS SAKLR + Sbjct: 302 NRSHSAKLRVAEK 314 >gi|301165427|emb|CBW24998.1| putative S-adenosyl-methyltransferase [Bacteriovorax marinus SJ] Length = 325 Score = 174 bits (442), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 114/320 (35%), Positives = 175/320 (54%), Gaps = 35/320 (10%) Query: 20 HVPVLLEKVIALLNPAPGKV----ILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSC 73 H VL ++V+ +L ++ D TFGAGG++ + + NV ++D+DP A+ Sbjct: 6 HYSVLNKEVVDILMEDSEQLQNIKFADMTFGAGGHTFALAESAKNVSVYSVDQDPDALKN 65 Query: 74 GQETMRDY--KEQFSLFQATFSQLQDYV----PDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 G+E + + E+ L F Q +++ + +G+V DLGVSS D GDRGFSF Sbjct: 66 GKENINELGLSERVFLHDMNFEQFPEFIRSSDSEMKFNGIVADLGVSSHHFDEGDRGFSF 125 Query: 128 QKSGPLDMRMSCSGI---SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 + PLDMRM +A+D+VN + +DL +I GEEK RI +I++ R+SAP Sbjct: 126 RFDAPLDMRMDVDNDELETAADIVNNYSKEDLEKIFFTYGEEKFTHRIVKSILEHRESAP 185 Query: 185 FQTTQDLSSLI----QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 +TT+ L +I K + F K I+PAT+ FQALRI VN E++ L + + L+ Sbjct: 186 IETTKQLEKIIIDCYPKKLQFGK---INPATKCFQALRIKVNKELDVLENVIPGLLELLE 242 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300 G L +++FHSLEDR+VK F AV+ +P ++ KK ++P+ ++ Sbjct: 243 INGRLAIITFHSLEDRIVKNLFKD------AVQSDVP-------YELYNKKPILPSHGEL 289 Query: 301 AFNRRSRSAKLRAGMRTVER 320 N RSRSAKLR + E+ Sbjct: 290 EENPRSRSAKLRVITKINEK 309 >gi|15618336|ref|NP_224621.1| S-adenosyl-methyltransferase MraW [Chlamydophila pneumoniae CWL029] gi|15835954|ref|NP_300478.1| S-adenosyl-methyltransferase MraW [Chlamydophila pneumoniae J138] gi|16752618|ref|NP_444882.1| S-adenosyl-methyltransferase MraW [Chlamydophila pneumoniae AR39] gi|33241770|ref|NP_876711.1| S-adenosyl-methyltransferase MraW [Chlamydophila pneumoniae TW-183] gi|20139310|sp|Q9Z8C2|RSMH_CHLPN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|4376702|gb|AAD18565.1| SAM-Dependent Methytransferase [Chlamydophila pneumoniae CWL029] gi|7189261|gb|AAF38187.1| conserved hypothetical protein [Chlamydophila pneumoniae AR39] gi|8978793|dbj|BAA98629.1| SAM-dependent methytransferase [Chlamydophila pneumoniae J138] gi|33236279|gb|AAP98368.1| predicted S-adenosylmethionine-dependent methyltransferase [Chlamydophila pneumoniae TW-183] gi|269303297|gb|ACZ33397.1| S-adenosyl-methyltransferase MraW [Chlamydophila pneumoniae LPCoLN] Length = 297 Score = 174 bits (442), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 117/303 (38%), Positives = 166/303 (54%), Gaps = 28/303 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALD---RDPFAVSCGQE 76 H+PVL+E+ +AL P + D T GAGG++ +F + ++ D RD A++ ++ Sbjct: 6 HIPVLVEECLALFAQRPPQTFRDVTLGAGGHAYAFLEAYPSLTCYDGSDRDLQALAIAEK 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ-KSGPLDM 135 + ++++ S A+F L + + DGV+ DLGVSSMQ+D RGFSFQ + LDM Sbjct: 66 RLETFQDRVSFSHASFEDLANQPTPRLYDGVLADLGVSSMQLDTLSRGFSFQGEKEELDM 125 Query: 136 RM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL-SS 193 RM +SASDV+N ++L RI GEE Q A A+V R+ + QD+ + Sbjct: 126 RMDQTQELSASDVLNSLKEEELGRIFREYGEEPQWKSAAKAVVHFRKHKKILSIQDVKEA 185 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 L+ ++ + +IHP T FQALR++VN E +L L SA L G L+++SF S Sbjct: 186 LLGVFPHYRFHRKIHPLTLIFQALRVYVNGEDRQLKSLLTSAISWLAPQGRLVIISFCSS 245 Query: 254 EDRLVKKFF----ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 EDR VK FF AS GKV ITKKV+ PT ++V N RSRSA Sbjct: 246 EDRPVKWFFKEAEASGLGKV------------------ITKKVIQPTYQEVRRNPRSRSA 287 Query: 310 KLR 312 KLR Sbjct: 288 KLR 290 >gi|126663227|ref|ZP_01734225.1| S-adenosyl-methyltransferase MraW [Flavobacteria bacterium BAL38] gi|126624885|gb|EAZ95575.1| S-adenosyl-methyltransferase MraW [Flavobacteria bacterium BAL38] Length = 298 Score = 174 bits (442), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 115/300 (38%), Positives = 175/300 (58%), Gaps = 17/300 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H PVLL++ + LN P V +D TFG GG+SR ++G N + A D+D A+ Sbjct: 4 HNPVLLKETVDGLNIRPDGVYVDVTFGGGGHSREIMSRLGENGKLFAFDQDLDALKNAI- 62 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 Y E+F+L F ++ ++ G VDG++ DLGVSS Q D +RGFS + L Sbjct: 63 ----YDERFTLINENFRFIKRFLRFHGIKQVDGILADLGVSSHQFDVAERGFSTRFDAEL 118 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ G ISA VVN+ + ++++R+L GE K A +A+ IV R+ + + L Sbjct: 119 DMRMNQKGDISAYHVVNEYDEQEISRVLFNYGELKNARAMANVIVTARKDKEIRNSDQLK 178 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++ K + K N+I + +QA+RI VN E+E L + L + + LK GG L V+S+HS Sbjct: 179 QVLAKFLPGHKANKI--LAQIYQAIRIEVNQEMEVLKEFLEQSLEILKPGGRLSVISYHS 236 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDRLVK+F + + R + P F++I +K++VP++E++A N R+RSAKLR Sbjct: 237 LEDRLVKRFVKNGMFEGEPERDFFGNFEVP--FKTI-EKLIVPSEEEIAINNRARSAKLR 293 >gi|282902029|ref|ZP_06309927.1| methyltransferase [Cylindrospermopsis raciborskii CS-505] gi|281193116|gb|EFA68115.1| methyltransferase [Cylindrospermopsis raciborskii CS-505] Length = 299 Score = 174 bits (442), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 111/301 (36%), Positives = 165/301 (54%), Gaps = 26/301 (8%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H+PVL E++I L G LD T G GG+SR + N V+A+D+D A+ + Sbjct: 18 HIPVLGEELIRGLTIQAGGNYLDLTVGGGGHSRLILQAADNTKVMAVDQDLDALKAAKIN 77 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 + ++ ++ F+ P DG++ DLGVSS +D RGFSF+ + LDMRM Sbjct: 78 LSEFGDRVDFLHTNFANFP--FPPNTYDGILADLGVSSYHLDNPVRGFSFRNTANLDMRM 135 Query: 138 SCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 + ++A+D+VN N ++LT I GEE+ + +IA I++ R PF TT +L+ I Sbjct: 136 NQQQSLTAADIVNGWNEQELTHIFFHYGEERLSRKIARRIIENR---PFSTTTELAESIS 192 Query: 197 KTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 V + RIHPATR FQALR+ VN+E++ L L A +L GG + ++SFHSLED Sbjct: 193 SCVPPKYRYGRIHPATRVFQALRLAVNDELQVLETLLHKAPPSLVPGGKIALISFHSLED 252 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 R+VK R+ ++ V +TKK + T+ ++ N RSRSAKLR Sbjct: 253 RIVKH--GLRNSDLLTV---------------MTKKPITATESEIQHNPRSRSAKLRIAQ 295 Query: 316 R 316 + Sbjct: 296 K 296 >gi|118618804|ref|YP_907136.1| S-adenosyl-methyltransferase MraW [Mycobacterium ulcerans Agy99] gi|118570914|gb|ABL05665.1| methyltransferase [Mycobacterium ulcerans Agy99] Length = 395 Score = 174 bits (442), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 116/315 (36%), Positives = 174/315 (55%), Gaps = 18/315 (5%) Query: 20 HVPVLLEKVIALLNPAPGK--------VILDATFGAGGYSRSFCKM--GSNVIALDRDPF 69 HVPVL ++ + LL PA + V++DAT GAGG++ F G +I LDRDP Sbjct: 65 HVPVLAQRCVELLRPALTRHHADGSEAVLVDATIGAGGHAERFLTELPGLRLIGLDRDPS 124 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSSMQIDCGDR 123 A+ + + + ++ +L + L + + G +DG +FDLGVSSMQ+D +R Sbjct: 125 ALEIVRTRLARFTDRVTLVHTRYDGLASALTELGYGAAQSIDGALFDLGVSSMQLDQAER 184 Query: 124 GFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GF++ K PLDMRM+ S +S +D++N + L IL GEE+ A RIA I++RR Sbjct: 185 GFAYSKDAPLDMRMNPQSALSGADIINTYDEAALADILHRYGEERFARRIAARIIRRRAD 244 Query: 183 APFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 PF TT +L +L+ + + ++ HPA R+FQALRI VN+E+ L + +A AL Sbjct: 245 RPFTTTAELVALLYEAIPAAARRTGGHPAKRTFQALRIAVNDELGSLRSAVPAAMDALAV 304 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 GG ++V+++ SLEDR+VK+ FA V + H F+S+T +V Sbjct: 305 GGRIVVMAYQSLEDRIVKRVFADAVASRTPVDLPVELPGHGPRFRSLTHGAERADAAEVE 364 Query: 302 FNRRSRSAKLRAGMR 316 N RS +LRA R Sbjct: 365 HNPRSAPVRLRALQR 379 >gi|168333718|ref|ZP_02691971.1| S-adenosyl-methyltransferase MraW [Epulopiscium sp. 'N.t. morphotype B'] Length = 311 Score = 174 bits (442), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 109/311 (35%), Positives = 169/311 (54%), Gaps = 25/311 (8%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 +H+ VLL + I LN + +D T G G++ C+ ++ +D+D A++ + Sbjct: 4 NHISVLLNECIEGLNIKTNGIYVDGTLGGAGHATEICRHLNSEGTLVGIDQDAIAIATAE 63 Query: 76 ETMRDYKEQFSLFQATFSQ----LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + + + + F+ L++ DK +DG++ DLGVSS Q+D +RGFS+ + Sbjct: 64 ARLAEAANRVLVIKXNFANVDAVLEELEIDK-IDGMLLDLGVSSYQLDEAERGFSYMRDA 122 Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM+ SA DVVN +L ++ GEEK A RIA IV+ R S+ TT + Sbjct: 123 KLDMRMNQDAKFSAFDVVNSYTEDELAVVIKNFGEEKWARRIAKFIVEARASSSIDTTYE 182 Query: 191 LSSLIQKTVYFSKNNRI---HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 L +I+K + K R+ HPA R+FQA+RI VN EI+ +A ++ L GG L + Sbjct: 183 LVEIIKKAI--PKAARLEGGHPAKRTFQAIRIEVNKEIDIIAPAIKEIVAHLNVGGRLAI 240 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV------FQSITKKVVVPTQEDVA 301 ++FHSLEDR+VK F PSN V + ITKK ++P+++++ Sbjct: 241 ITFHSLEDRIVKHTFRELENPCTC-----PSNFPICVCNKKSQVKVITKKPILPSEQELE 295 Query: 302 FNRRSRSAKLR 312 N RS+SAKLR Sbjct: 296 NNSRSKSAKLR 306 >gi|257468236|ref|ZP_05632332.1| methyltransferase [Fusobacterium ulcerans ATCC 49185] gi|317062518|ref|ZP_07927003.1| S-adenosyl-methyltransferase mraW [Fusobacterium ulcerans ATCC 49185] gi|313688194|gb|EFS25029.1| S-adenosyl-methyltransferase mraW [Fusobacterium ulcerans ATCC 49185] Length = 313 Score = 174 bits (442), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 110/310 (35%), Positives = 172/310 (55%), Gaps = 20/310 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+PVL + I L + LD T G GG+S K S +I++D+D A+ ++ Sbjct: 9 HIPVLYRESIDNLVINKDGIYLDCTLGGGGHSEGILKELSEKGRLISIDQDQQAIDFAKK 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + Y ++ +F+ F L + G +DG++ D+GVSS Q+D +RGFS++ L Sbjct: 69 RLEKYGNKWQVFKNNFENLDTVIYMAGYDKIDGILMDIGVSSTQLDDPERGFSYRYDTKL 128 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ + +SA +VVN+ + + L +IL GEE+ + RIA I + R+ +TT +L Sbjct: 129 DMRMNQNNPLSAYEVVNEYSEEALMKILFEYGEERNSRRIAKFICEAREIKKIETTGELV 188 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++I++ + + HPA ++FQA+RI VN E+E L + + A +LK GG L +++FHS Sbjct: 189 AIIKRA--YPERAAKHPAKKTFQAIRIEVNRELEVLEKAIDKAVDSLKVGGRLGIITFHS 246 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSN------AHPAVFQSITKKVVVPTQEDVAFNRRS 306 LEDRLVK F K +A P A + ITKK ++P +V FN R+ Sbjct: 247 LEDRLVKTKF-----KDLATACKCPPGLPICVCGGKAKVKLITKKPIIPEGNEVEFNNRA 301 Query: 307 RSAKLRAGMR 316 S+KLR R Sbjct: 302 HSSKLRVVER 311 >gi|269792475|ref|YP_003317379.1| S-adenosyl-methyltransferase MraW [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100110|gb|ACZ19097.1| S-adenosyl-methyltransferase MraW [Thermanaerovibrio acidaminovorans DSM 6589] Length = 313 Score = 174 bits (442), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 106/306 (34%), Positives = 170/306 (55%), Gaps = 26/306 (8%) Query: 20 HVPVLLEKVIALLNPAPG-KVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQE 76 H+PV+L+K++ LL P +++D T GAGG+SR+ + G+++I +D+D + +E Sbjct: 4 HIPVMLDKILELLRPWEEVGLVVDGTLGAGGHSRAILERCQGASLIGIDQDQSILDIARE 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + ++ F + + D G V VFDLG+SS Q+D +RGFSF GPL Sbjct: 64 VLSPFGDRVRTVLGNFRDVGRILADLGSPRVSAFVFDLGISSWQVDTPERGFSFNYKGPL 123 Query: 134 DMRMSCSGI---SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ-SAPFQTTQ 189 DMRM + +A+D+VN ++ +L + GE+ A ++A AI + R+ P +T + Sbjct: 124 DMRMDMGRLGSRTAADIVNGWSMAELAALFRRYGEDPFAYQVARAICRHREKEGPIETCE 183 Query: 190 DLSSLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 L S+I+ + + R HPA R FQALRI VN+E+ L + L G +I Sbjct: 184 ALVSVIRSAIPAPAQRKMRGHPARRIFQALRIEVNDELGALEELLDQLPSMGSEGCKVIF 243 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +++HSLEDRLVK +G+ + V +T+K +VP++E+V NRR+R Sbjct: 244 ITYHSLEDRLVKGRMREWAGQDLGV--------------PLTRKPLVPSEEEVELNRRAR 289 Query: 308 SAKLRA 313 SAK+R Sbjct: 290 SAKVRC 295 >gi|255282562|ref|ZP_05347117.1| S-adenosyl-methyltransferase MraW [Bryantella formatexigens DSM 14469] gi|255266855|gb|EET60060.1| S-adenosyl-methyltransferase MraW [Bryantella formatexigens DSM 14469] Length = 312 Score = 174 bits (442), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 101/308 (32%), Positives = 174/308 (56%), Gaps = 9/308 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H VLL + I LN P + +D T G GG+S C+ S ++ +D+D A++ E Sbjct: 5 HTSVLLGETIDALNINPDGIYVDGTLGGGGHSYEICRRLSGRGRLVGIDQDAAAIAAASE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + ++K++ ++ ++ + ++++ + GV DG++ DLGVSS Q+D DRGF++++ PL Sbjct: 65 RLGEFKDKVTIIRSNYCEMRERLAGIGVTGADGIILDLGVSSYQLDTADRGFTYREDAPL 124 Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM +A D+VN + +L RI+ GE++ A IA IV+ R+ P +TT +L Sbjct: 125 DMRMDQRQTRTAKDIVNGYSEMELYRIIRDYGEDRFAKNIAKHIVQAREEKPLETTGELI 184 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + + HPA ++FQA+RI +NNE+ L+ L + L G + +++FH Sbjct: 185 HVIKAAIPMKVRAVGGHPAKKTFQAIRIELNNELGVLSDSLDDMIELLNNKGRICIITFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK F + + + + +T+K ++P +E++ N RS+SAK Sbjct: 245 SLEDRIVKNAFRKNENPCICPKEFPVCVCGRKPKGRVLTRKPILPGEEEMKENSRSKSAK 304 Query: 311 LRAGMRTV 318 LR R + Sbjct: 305 LRVFEREI 312 >gi|183221148|ref|YP_001839144.1| S-adenosyl-methyltransferase MraW [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911239|ref|YP_001962794.1| S-adenosylmethionine-dependentmethyltransferase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|263456288|sp|B0S989|RSMH_LEPBA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263456310|sp|B0SRS3|RSMH_LEPBP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|167775915|gb|ABZ94216.1| S-adenosylmethionine-dependentmethyltransferase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779570|gb|ABZ97868.1| S-adenosyl-methyltransferase MraW [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 314 Score = 174 bits (442), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 120/317 (37%), Positives = 171/317 (53%), Gaps = 39/317 (12%) Query: 20 HVPVLLEKVIALL----NPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73 H+PVL +VI+LL NP P + LD T G GG+S+ K + +I +DRD AV Sbjct: 6 HIPVLPSEVISLLQQTKNPNP-QWFLDGTAGEGGHSKLILKTFPEAKLILIDRD--AVML 62 Query: 74 GQETMRDYKEQFSL-----FQATFSQ----LQDYVPDKGVDGVVFDLGVSSMQIDCGDRG 124 + KE SL FQ FS+ L V +DG + DLGVS RG Sbjct: 63 ERAKKEILKEIGSLDRVHAFQMNFSEVDSELLQEVGCPSLDGALVDLGVSLFHFLHSGRG 122 Query: 125 FSFQKSGPLDMRMSCS--GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 F+F+ PLDMR+ + G +A+DVVN ++V L ++ GEE+ A +IA+ IV+ R Sbjct: 123 FTFKNDEPLDMRLEANIGGKTAADVVNYSSVLHLKKVFWEYGEERWALKIANNIVQTRHK 182 Query: 183 APFQTTQDLSSLIQKTV---YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 F T DL L++ ++ ++ K + HPATR FQALRI VN E+ +G+R+ + L Sbjct: 183 KKFGTNTDLVKLVEASIPRKFWPKES--HPATRIFQALRIEVNEELVHAEKGIRALAQCL 240 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 GG+L +SFHSLEDR+VK F F+ +TKK ++P++ + Sbjct: 241 GIGGVLTCISFHSLEDRIVKWTFRDLKDN--------------GPFEILTKKPILPSETE 286 Query: 300 VAFNRRSRSAKLRAGMR 316 + NR SRSAKLR M+ Sbjct: 287 IKENRASRSAKLRGLMK 303 >gi|256425920|ref|YP_003126573.1| S-adenosyl-methyltransferase MraW [Chitinophaga pinensis DSM 2588] gi|256040828|gb|ACU64372.1| S-adenosyl-methyltransferase MraW [Chitinophaga pinensis DSM 2588] Length = 302 Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 116/305 (38%), Positives = 165/305 (54%), Gaps = 23/305 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQE 76 H+PVLL++VI L P V +DATFG GG+SR+ K+ N +I D+D A + + Sbjct: 8 HLPVLLQEVITNLQIQPDGVYVDATFGGGGHSRAILEKLNENGRLIVFDQDEDAYNNRID 67 Query: 77 TMRDYKEQFSLFQATFSQLQDY------VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 R + Q F LQ + VP VDG++ DLGVSS Q D +RGFS + Sbjct: 68 DPR-----VTFVQQNFRHLQRFLRLYKSVP---VDGILADLGVSSWQFDTAERGFSTRFD 119 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 G LDMRM + ++A+ ++ + K+L + GE A +A IV+ R++ P +T Sbjct: 120 GDLDMRMDKRNALTAASLLQSSTEKELHLLFQNYGEVTNARTLAKTIVQERKARPMRTIN 179 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 + S+IQ V K N + FQALRI VN+E L L + + LK GG L +++ Sbjct: 180 EFKSVIQPIV---KGNPQKYLAQVFQALRIVVNDEFGALKDMLNQSAEVLKPGGKLAIIT 236 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRLVK F ++G+ A P +F+ +TKK V + E++ N RSRSA Sbjct: 237 FHSLEDRLVKNFM--KTGQFEAQEDTFSYETPPKLFRLVTKKPVTASPEELKRNTRSRSA 294 Query: 310 KLRAG 314 KLR Sbjct: 295 KLRVA 299 >gi|227875248|ref|ZP_03993390.1| S-adenosyl-methyltransferase [Mobiluncus mulieris ATCC 35243] gi|307700815|ref|ZP_07637840.1| S-adenosyl-methyltransferase MraW [Mobiluncus mulieris FB024-16] gi|227844153|gb|EEJ54320.1| S-adenosyl-methyltransferase [Mobiluncus mulieris ATCC 35243] gi|307613810|gb|EFN93054.1| S-adenosyl-methyltransferase MraW [Mobiluncus mulieris FB024-16] Length = 340 Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 116/316 (36%), Positives = 181/316 (57%), Gaps = 14/316 (4%) Query: 11 SAIHHTIGDHVPVLLEKVIALLNPA----PGKVILDATFGAGGYSRSFCKMGSN--VIAL 64 S I T H PVL+++ + LL PA V++DAT G GG+S + + + +I + Sbjct: 2 STITPTAAIHQPVLVQRCVELLAPALIPVERPVLVDATVGLGGHSEALLQRFPHLQIIGI 61 Query: 65 DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCG 121 DRD A + + + + + + AT+ QL + + ++G VDG++ DLGVSS+Q+D Sbjct: 62 DRDGEARALAGKRLSVFGSRIEIVAATYGQLAEILAERGLETVDGILADLGVSSLQLDET 121 Query: 122 DRGFSFQ-KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 RGF++ PLDMRM S GI+A+ + + ++ R+L GEEK A +IA IVK Sbjct: 122 ARGFAYAIPEAPLDMRMDQSRGITAAQFIATTSETEIARVLRTYGEEKFARQIARNIVKT 181 Query: 180 RQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R+ P +TT +L LI+ T+ ++ + +PA R+FQALR+ VN+E+ +L L +A A Sbjct: 182 REVTPLRTTGELVDLIRATIPAPARRHGGNPAKRTFQALRVAVNDELRDLEVFLTAALDA 241 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297 L+ GG L+V S+ SLEDRLVK+ F +V +IP+ P Q +T+ Sbjct: 242 LRVGGRLVVESYQSLEDRLVKQAFTPGIHPEVPRGLPVIPTGYEP-WLQDLTRGAEKADA 300 Query: 298 EDVAFNRRSRSAKLRA 313 ++ N RS+S +LRA Sbjct: 301 LELQRNSRSQSVRLRA 316 >gi|148994362|ref|ZP_01823605.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae SP9-BS68] gi|147927293|gb|EDK78326.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae SP9-BS68] Length = 316 Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 110/309 (35%), Positives = 175/309 (56%), Gaps = 14/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 HV VLL + I +L+ P + +DAT G G+S S ++ A D+D A+ Q+ Sbjct: 7 HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQQ 66 Query: 77 TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y E+ + + F LQ + + GV DG+ +DLGVSS Q+D +RGFS++K Sbjct: 67 RLAPYIEKGMVTFIKDNFRHLQVRLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ + ++A +VVN + DL RI GE+K + +IA I + R P +TT + Sbjct: 127 PLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQARDVKPIETTTE 186 Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ +I K+ +K + HPA + FQA+RI VN+E+ + ++ + L G + V+ Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQSMDMLTLDGRISVI 245 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F S +V IP + P + + +++K ++P+ E++ N RS Sbjct: 246 TFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKM-ELVSRKPILPSAEELEANNRSH 304 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 305 SAKLRVARK 313 >gi|218248877|ref|YP_002374248.1| S-adenosyl-methyltransferase MraW [Cyanothece sp. PCC 8801] gi|263447389|sp|B7K639|RSMH_CYAP8 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|218169355|gb|ACK68092.1| S-adenosyl-methyltransferase MraW [Cyanothece sp. PCC 8801] Length = 304 Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 120/304 (39%), Positives = 170/304 (55%), Gaps = 31/304 (10%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 H+ VL ++ IA LN PG LDAT G+GG+SR +V A+DRD A++ Sbjct: 22 HISVLSQETIAGLNIIPGGHYLDATVGSGGHSRLILATFPDVRITAIDRDSQAIAAAASN 81 Query: 78 MRDY-KEQFSLFQATFSQLQDYVPDKGVD--GVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + + E+ +Q F+ DY P K + G++ DLGVSS Q D +RGFSF+ G LD Sbjct: 82 LAELGSERLKFWQGNFA---DY-PGKIAEFSGIIADLGVSSPQFDFPERGFSFRHEGALD 137 Query: 135 MRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM ++A +++NQ + L + GEE+++ +A IV++R PF+TT L+ Sbjct: 138 MRMDQTQSLTAGEIINQWSETALADLFYQYGEERRSRSMAKHIVQQR---PFKTTTQLAE 194 Query: 194 LIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 I +TV + RIHPATR FQALRI VN E+ L + L A + L+ GG + ++SFHS Sbjct: 195 AIAQTVPPKYRYGRIHPATRVFQALRIAVNEELSSLERFLDQAPQWLQPGGRIGIISFHS 254 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK F R + V +TKK ++P +E+ N RSRSAKLR Sbjct: 255 LEDRIVKYRF--RDSSWLTV---------------MTKKPIIPQREEQLKNPRSRSAKLR 297 Query: 313 AGMR 316 R Sbjct: 298 LAER 301 >gi|313899190|ref|ZP_07832710.1| S-adenosyl-methyltransferase MraW [Clostridium sp. HGF2] gi|312956013|gb|EFR37661.1| S-adenosyl-methyltransferase MraW [Clostridium sp. HGF2] Length = 311 Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 118/303 (38%), Positives = 166/303 (54%), Gaps = 11/303 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77 H VLL + I L + +D T G GG+S ++ A DRD A+ +E Sbjct: 4 HYSVLLHESIDNLAIHSDGIYVDGTLGRGGHSAEILARIPQGHLYAFDRDASAIEKSRER 63 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + + +L + FS L+ + +GV DG+V DLGVSS Q D RGFS++ PLD Sbjct: 64 LAQIGDNVTLIHSNFSNLKRELTARGVTGIDGMVLDLGVSSPQFDEAQRGFSYRFDAPLD 123 Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM S +SA VVN+ ++L RI GEE A +IA I K R+ P +TT L Sbjct: 124 MRMDQSQKLSAYQVVNEWEYQELVRIFFQFGEESFAKQIARKIEKAREVKPIETTFALVD 183 Query: 194 LIQKTVYFSK--NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I K+ +K N + HPA + FQA+RI VN+E+ EL LR A + L GG L V+SF Sbjct: 184 VI-KSALPAKVLNKKGHPAKKVFQAIRIAVNDELGELQLVLRDALELLHVGGRLCVISFQ 242 Query: 252 SLEDRLVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK F+S S + ++P + A ++ + KK + T+E++ N RS SA Sbjct: 243 SLEDRIVKDTFSSCSKPKQYDKRIPILPQDMEAAPYRLLNKKPITATEEELRENMRSHSA 302 Query: 310 KLR 312 KLR Sbjct: 303 KLR 305 >gi|269978137|ref|ZP_06185087.1| S-adenosyl-methyltransferase MraW [Mobiluncus mulieris 28-1] gi|269933646|gb|EEZ90230.1| S-adenosyl-methyltransferase MraW [Mobiluncus mulieris 28-1] Length = 340 Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 116/316 (36%), Positives = 181/316 (57%), Gaps = 14/316 (4%) Query: 11 SAIHHTIGDHVPVLLEKVIALLNPA----PGKVILDATFGAGGYSRSFCKMGSN--VIAL 64 S I T H PVL+++ + LL PA V++DAT G GG+S + + + +I + Sbjct: 2 STITPTAAIHQPVLVQRCVELLAPALIPVERPVLVDATVGLGGHSEALLQRFPHLQIIGI 61 Query: 65 DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCG 121 DRD A + + + + + + AT+ QL + + ++G VDG++ DLGVSS+Q+D Sbjct: 62 DRDGEARALAGKRLSVFGSRIEIVAATYGQLAEILAERGLETVDGILADLGVSSLQLDET 121 Query: 122 DRGFSFQ-KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 RGF++ PLDMRM S GI+A+ + + ++ R+L GEEK A +IA IVK Sbjct: 122 ARGFAYAIPEAPLDMRMDQSRGITAAQFIATTSETEIARVLRTYGEEKFARQIARNIVKT 181 Query: 180 RQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R+ P +TT +L LI+ T+ ++ + +PA R+FQALR+ VN+E+ +L L +A A Sbjct: 182 REVTPLRTTGELVDLIRATIPAPARRHGGNPAKRTFQALRVAVNDELRDLEVFLTAALDA 241 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297 L+ GG L+V S+ SLEDRLVK+ F +V +IP+ P Q +T+ Sbjct: 242 LRVGGRLVVESYQSLEDRLVKQAFTPGIHPEVPRGLPVIPTGYEP-WLQDLTRGAEKADA 300 Query: 298 EDVAFNRRSRSAKLRA 313 ++ N RS+S +LRA Sbjct: 301 LELQRNSRSQSVRLRA 316 >gi|227877318|ref|ZP_03995391.1| S-adenosyl-methyltransferase [Lactobacillus crispatus JV-V01] gi|256842880|ref|ZP_05548368.1| methylase MraW [Lactobacillus crispatus 125-2-CHN] gi|256848746|ref|ZP_05554180.1| cell division protein MraW [Lactobacillus crispatus MV-1A-US] gi|262045846|ref|ZP_06018810.1| methylase MraW [Lactobacillus crispatus MV-3A-US] gi|312977602|ref|ZP_07789349.1| S-adenosyl-methyltransferase MraW [Lactobacillus crispatus CTV-05] gi|227863174|gb|EEJ70620.1| S-adenosyl-methyltransferase [Lactobacillus crispatus JV-V01] gi|256614300|gb|EEU19501.1| methylase MraW [Lactobacillus crispatus 125-2-CHN] gi|256714285|gb|EEU29272.1| cell division protein MraW [Lactobacillus crispatus MV-1A-US] gi|260573805|gb|EEX30361.1| methylase MraW [Lactobacillus crispatus MV-3A-US] gi|310895341|gb|EFQ44408.1| S-adenosyl-methyltransferase MraW [Lactobacillus crispatus CTV-05] Length = 315 Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 113/312 (36%), Positives = 170/312 (54%), Gaps = 17/312 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77 H VLL + I L P G + +DATFG GG+++ ++ D+D +A+ + Sbjct: 5 HTSVLLHETIDNLKPKNGGLYVDATFGGGGHAKYLLSKIDTGTLVGFDQDEYAIKSAKLN 64 Query: 78 MR-----DYKEQFSLFQATFSQLQ-DYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 D + + L FS L+ D V G+DG+ +DLGVSS Q D DRGFS++ Sbjct: 65 FANLLQLDSEPRLELVHDNFSNLEKDLVKLGYSDGIDGIYYDLGVSSPQFDQADRGFSYR 124 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 LDMRM S + A +VN + K+L IL G+EK + +IAH IV+RR+ P T Sbjct: 125 YDARLDMRMDQSQDLDAYQLVNTLSQKELADILYQYGDEKFSRQIAHRIVERRREKPIAT 184 Query: 188 TQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T +L +I+ + +++ HPA +SFQALR+ VN+E++ L L A K L+ GG + Sbjct: 185 TFELVDVIKDAIPAYARRTGGHPAKKSFQALRVAVNHELDVLQASLEEAIKILRPGGRIS 244 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 V++F S ED++VK+ F S +V R M IP P + + + K +V + ++ N Sbjct: 245 VITFQSHEDKIVKRIFKKYS-EVEVPRGMPFIPDGMKPTL-RLVNHKPIVASTSELENNN 302 Query: 305 RSRSAKLRAGMR 316 RS SAKLR + Sbjct: 303 RSHSAKLRVAEK 314 >gi|116494758|ref|YP_806492.1| SAM-dependent methyltransferase for cell envelope biogenesis [Lactobacillus casei ATCC 334] gi|122263824|sp|Q039S2|RSMH_LACC3 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|116104908|gb|ABJ70050.1| SAM-dependent methyltransferase for cell envelope biogenesis [Lactobacillus casei ATCC 334] Length = 313 Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 113/303 (37%), Positives = 161/303 (53%), Gaps = 12/303 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77 H VLL++ A L P +DAT G GG++R +IA D+D A++ Sbjct: 6 HETVLLKEATAALAVKPAGTYVDATLGRGGHTRQILNHLTTGRLIAFDQDEAAIATVTAD 65 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 +Q +L F L D + G VDG+++DLGVSS Q D RGFS++ PLD Sbjct: 66 FGTLPKQLTLVHRNFRDLTDALTTLGITEVDGILYDLGVSSPQFDDSKRGFSYRFDAPLD 125 Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM + A +VN+ DL RI GEE + +IA I + R P TT L Sbjct: 126 MRMDQRQTLDAKTIVNEWPYADLVRIFSRYGEEHFSKQIARRIEQARTVQPITTTFQLVE 185 Query: 194 LIQKTVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 LI+ + +K R HPA + FQA+RI VN+E+ L L A K + GG + V++F Sbjct: 186 LIKAGIP-AKARRTGGHPAKKVFQAIRIAVNDELSALESSLEQALKLINVGGRISVITFQ 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDRLVK F S R + IP++A P ++ + +K ++P++E++A N R+ SA Sbjct: 245 SLEDRLVKTMFKEVSSVQDVPRGLPVIPASAQPN-YRLVNRKPILPSEEELAVNHRAHSA 303 Query: 310 KLR 312 KLR Sbjct: 304 KLR 306 >gi|257413358|ref|ZP_04742795.2| S-adenosyl-methyltransferase MraW [Roseburia intestinalis L1-82] gi|257203798|gb|EEV02083.1| S-adenosyl-methyltransferase MraW [Roseburia intestinalis L1-82] Length = 315 Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 109/308 (35%), Positives = 172/308 (55%), Gaps = 20/308 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76 H VLL + I LN P + +D T G GG+S K +G N +I +D+D A+ E Sbjct: 8 HYSVLLNETIENLNIRPDGIYVDGTLGGGGHSYQILKRLGENGRLIGIDQDADAIQAAGE 67 Query: 77 TMRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK-SGP 132 + ++ + +L ++ ++ +++ + GVDG+V DLGVSS Q+D +RGF++++ P Sbjct: 68 RLAEFGNKATLIRSNYANMKEELHAIGVNGVDGIVLDLGVSSFQLDTPERGFTYREPDAP 127 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM +A D+VN + DL RI+ GE+K A IA IVK RQ +T +L Sbjct: 128 LDMRMDDRQSQTAKDIVNGYSEMDLYRIIRDYGEDKFAKNIAKHIVKERQKKTIETAGEL 187 Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 + +I+ + + HPA R+FQA+RI +N+E+E L+ L L GG + +++F Sbjct: 188 TDIIRAAIPMKVQVTGGHPAKRTFQAIRIELNHELEVLSDHLDEMIDLLNPGGRICIITF 247 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF------QSITKKVVVPTQEDVAFNR 304 HSLEDR+VK F PS+ V + IT+K ++P+++++ N Sbjct: 248 HSLEDRIVKSNFKRNENPCTC-----PSDFPVCVCGKVSKGKVITRKPILPSEKELEENS 302 Query: 305 RSRSAKLR 312 RS+SAKLR Sbjct: 303 RSKSAKLR 310 >gi|167838012|ref|ZP_02464871.1| S-adenosyl-methyltransferase MraW [Burkholderia thailandensis MSMB43] Length = 313 Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 118/311 (37%), Positives = 183/311 (58%), Gaps = 21/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H VLL++ + L P V +D TFG GG+SR+ S +IA D+DP A+ E Sbjct: 7 HRTVLLDEAVDALVTRPDGVYVDGTFGRGGHSRAVLARLSEAGRLIAFDKDPRAI----E 62 Query: 77 TMRDYKE-QFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 T + + +F + +F+ ++ + +GV GV+ DLGVSS Q+D RGFSF+ +GP Sbjct: 63 TAKGIADARFEIVHDSFAAMKGALDARGVARVSGVLLDLGVSSPQVDDPARGFSFRANGP 122 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQT 187 LDMRM + G SA++ + +A+V++LT ++ GEE+ A +IA AIV RR + P + Sbjct: 123 LDMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRLGPLDS 182 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T +L+ ++ V + + PATR+FQA+RI VN E+ +L L +A +L+ GG L+V Sbjct: 183 TGELAQIVGHVVKTREKGK-DPATRTFQAIRIHVNQELADLQVVLEAALSSLEQGGRLVV 241 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA--HPAVFQSITKKVVVPTQEDVAFNRR 305 +SFHSLEDR+VK+F + + AV +P A P+ + + + P+ +VA N R Sbjct: 242 ISFHSLEDRIVKRFLQTHA-SAPAVDRRLPIRAVDLPSPPLKLLGR-MFPSDAEVAANPR 299 Query: 306 SRSAKLRAGMR 316 +RSA +R R Sbjct: 300 ARSAVMRIAER 310 >gi|306818510|ref|ZP_07452233.1| S-adenosyl-methyltransferase MraW [Mobiluncus mulieris ATCC 35239] gi|304648683|gb|EFM45985.1| S-adenosyl-methyltransferase MraW [Mobiluncus mulieris ATCC 35239] Length = 340 Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 116/316 (36%), Positives = 181/316 (57%), Gaps = 14/316 (4%) Query: 11 SAIHHTIGDHVPVLLEKVIALLNPA----PGKVILDATFGAGGYSRSFCKMGSN--VIAL 64 S I T H PVL+++ + LL PA V++DAT G GG+S + + + +I + Sbjct: 2 STITPTAAIHQPVLVQRCVELLAPALIPVERPVLVDATVGLGGHSEALLQRFPHLQIIGI 61 Query: 65 DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCG 121 DRD A + + + + + + AT+ QL + + ++G VDG++ DLGVSS+Q+D Sbjct: 62 DRDGEARALAGKRLSVFGSRIEIVAATYGQLAEILAERGLETVDGILADLGVSSLQLDET 121 Query: 122 DRGFSFQ-KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 RGF++ PLDMRM S GI+A+ + + ++ R+L GEEK A +IA IVK Sbjct: 122 ARGFAYAIPEAPLDMRMDQSRGITAAQFIATTSETEIARVLRTYGEEKFARQIARNIVKT 181 Query: 180 RQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R+ P +TT +L LI+ T+ ++ + +PA R+FQALR+ VN+E+ +L L +A A Sbjct: 182 REVTPLRTTGELVDLIRATIPAPARRHGGNPAKRTFQALRVAVNDELRDLEVFLTAALDA 241 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297 L+ GG L+V S+ SLEDRLVK+ F +V +IP+ P Q +T+ Sbjct: 242 LRVGGRLVVESYQSLEDRLVKQAFTPGIHPEVPRGLPVIPTGYEP-WLQDLTRGAEKADA 300 Query: 298 EDVAFNRRSRSAKLRA 313 ++ N RS+S +LRA Sbjct: 301 LELQRNSRSQSVRLRA 316 >gi|15675533|ref|NP_269707.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes M1 GAS] gi|19746583|ref|NP_607719.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes MGAS8232] gi|21910939|ref|NP_665207.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes MGAS315] gi|28895371|ref|NP_801721.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes SSI-1] gi|71904072|ref|YP_280875.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes MGAS6180] gi|71911181|ref|YP_282731.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes MGAS5005] gi|94988995|ref|YP_597096.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes MGAS9429] gi|94990995|ref|YP_599095.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes MGAS10270] gi|94992888|ref|YP_600987.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes MGAS2096] gi|306826911|ref|ZP_07460211.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes ATCC 10782] gi|13622733|gb|AAK34428.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS] gi|19748798|gb|AAL98218.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232] gi|21905146|gb|AAM80010.1| putative S-adenosyl-methyltransferase MraW [Streptococcus pyogenes MGAS315] gi|28810617|dbj|BAC63554.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1] gi|71803167|gb|AAX72520.1| S-adenosyl-methyltransferase [Streptococcus pyogenes MGAS6180] gi|71853963|gb|AAZ51986.1| S-adenosyl-methyltransferase [Streptococcus pyogenes MGAS5005] gi|94542503|gb|ABF32552.1| S-adenosyl-methyltransferase [Streptococcus pyogenes MGAS9429] gi|94544503|gb|ABF34551.1| S-adenosyl-methyltransferase mraW [Streptococcus pyogenes MGAS10270] gi|94546396|gb|ABF36443.1| S-adenosyl-methyltransferase mraW [Streptococcus pyogenes MGAS2096] gi|304430929|gb|EFM33938.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes ATCC 10782] Length = 337 Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 111/323 (34%), Positives = 179/323 (55%), Gaps = 17/323 (5%) Query: 5 SCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGS--NV 61 + K M+ HH V VLL + + +L+ P + +DAT G G+S K+G ++ Sbjct: 18 TIKVMTKEFHH-----VTVLLHETVDMLDIKPDGIYVDATLGGSGHSAYLLSKLGEEGHL 72 Query: 62 IALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSM 116 D+D A+ Q T++ Y K Q + + F L+ + GVD G+++DLGVSS Sbjct: 73 YCFDQDQKAIDNAQVTLKSYIDKGQVTFIKDNFRHLKARLTALGVDEIDGILYDLGVSSP 132 Query: 117 QIDCGDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175 Q+D +RGFS+++ PLDMRM S ++A +VVN DL +I GE+K + +IA Sbjct: 133 QLDERERGFSYKQDAPLDMRMDRQSLLTAYEVVNTYPFNDLVKIFFKYGEDKFSKQIARK 192 Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRS 234 I + R P +TT +L+ LI+ + + HPA + FQA+RI VN+E+ + ++ Sbjct: 193 IEQARAIKPIETTTELAELIKAAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQD 252 Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVV 293 A + L G + V++FHSLEDRL K+ F S V +IP + P F+ +++K + Sbjct: 253 AMELLALDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPLIPEDMKPK-FELVSRKPI 311 Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316 +P+ ++ N+R+ SAKLR + Sbjct: 312 LPSHSELTANKRAHSAKLRVAKK 334 >gi|326204085|ref|ZP_08193946.1| S-adenosyl-methyltransferase MraW [Clostridium papyrosolvens DSM 2782] gi|325985852|gb|EGD46687.1| S-adenosyl-methyltransferase MraW [Clostridium papyrosolvens DSM 2782] Length = 313 Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 116/314 (36%), Positives = 169/314 (53%), Gaps = 31/314 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76 H VLL++ I LN + +D T G G+S K +G +I LD+D FAV + Sbjct: 5 HKSVLLDECIENLNINQDGIYVDGTIGGAGHSSEIYKRLGEKGCLIGLDQDSFAVETSVK 64 Query: 77 TMRDYKEQ--FSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + + Q F + F ++ + G VDG++ DLGVSS Q+D RGFS+Q Sbjct: 65 RLSEIESQADFKVVNTNFKNIRKACSELGIDEVDGILLDLGVSSHQLDEASRGFSYQHDA 124 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S +SA DVVN+ + +D+ RI+ GEEK +SRIA IV+ R + P +TT + Sbjct: 125 PLDMRMDTKSDLSAYDVVNKYSEQDIYRIIRDYGEEKWSSRIAKFIVEARSNKPVETTYE 184 Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I++ V S + + HPA R+FQA+RI VNNE+ L + + LK G L +++ Sbjct: 185 LVDIIKRAVPSSARRDGPHPAKRTFQAIRIEVNNELGILNKTIEDCVDLLKGEGRLCIIT 244 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF-----------QSITKKVVVPTQE 298 FHSLEDR+VK F M+ P F + + +K +V Sbjct: 245 FHSLEDRIVKLQF----------NKMVNPCTCPTSFPVCVCGKKPRAKLVNRKPIVSGVS 294 Query: 299 DVAFNRRSRSAKLR 312 ++ N R+RSAKLR Sbjct: 295 ELEENPRARSAKLR 308 >gi|227548905|ref|ZP_03978954.1| S-adenosyl-methyltransferase MraW [Corynebacterium lipophiloflavum DSM 44291] gi|227079033|gb|EEI16996.1| S-adenosyl-methyltransferase MraW [Corynebacterium lipophiloflavum DSM 44291] Length = 345 Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 112/321 (34%), Positives = 178/321 (55%), Gaps = 24/321 (7%) Query: 20 HVPVLLEKVIALLNPA-----PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVS 72 HVPV+ +++ LL PA G VI+DAT GAGG++ F + G++VI +DRDP A+ Sbjct: 23 HVPVMRDRMADLLAPAVEVFGAGAVIVDATLGAGGHTEHFLRRFPGASVIGVDRDPAALR 82 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDK-----------GVDGVVFDLGVSSMQIDCG 121 E + + ++F QA F + + D+ GV G +FDLGVSSMQ+D Sbjct: 83 DATERLAPFADRFVGVQARFDDIGTAIRDRDGAIFDAARTHGVAGALFDLGVSSMQLDQE 142 Query: 122 DRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGF+++ PLDMRM + ++A+DV+N + +L RIL G+E+ A +IA I+K R Sbjct: 143 ERGFAYKVDAPLDMRMDPTTTLTAADVLNTYSHGELARILKTYGDERFAGKIASHILKER 202 Query: 181 QSAPFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 + APF+ + L L+ + + ++ HPA R+FQALRI VN E++ L + L Sbjct: 203 EKAPFERSARLVELLYQAIPAATRRTGGHPAKRTFQALRIEVNGELDALRAVIPVITDLL 262 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 GG + +S+ SLED++VK S + + A F+ IT ++ + Sbjct: 263 GPGGRAVFMSYQSLEDKIVKNALTSLTTSTTPTGLPMDLPGTAATFRWITHGAEKASEAE 322 Query: 300 VAFNRRSRSAKLRAGMRTVER 320 + ++ SR+A +R +R VE+ Sbjct: 323 I--DQNSRAAPVR--VRGVEK 339 >gi|319786245|ref|YP_004145720.1| S-adenosyl-methyltransferase MraW [Pseudoxanthomonas suwonensis 11-1] gi|317464757|gb|ADV26489.1| S-adenosyl-methyltransferase MraW [Pseudoxanthomonas suwonensis 11-1] Length = 329 Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 120/313 (38%), Positives = 181/313 (57%), Gaps = 7/313 (2%) Query: 4 KSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSN 60 ++ + A T H+PVL +V+ L P LD TFG GG++R + G Sbjct: 7 RTAQPGHPADPSTPAAHLPVLFAEVLDGLRVVPEGRYLDGTFGRGGHARGVLERLGPGGR 66 Query: 61 VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDC 120 ++ +D+DP A++ + + S+ + +F+ + + + +DG++ DLGVSS Q+D Sbjct: 67 LLLMDKDPEAIAVAEAGF-GSDPRVSIRRGSFTGMAHWDEARDLDGILLDLGVSSPQLDV 125 Query: 121 GDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFSF K GPLDMRM SG SA+ + +A+ +++ +L I GEEKQ+ RIA AIV Sbjct: 126 AERGFSFGKDGPLDMRMDPDSGESAAQWLARADEREIADVLWIYGEEKQSRRIARAIVAA 185 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 R P T L++LI V K+ R +PATRSFQA+RI +N E+ +L GL +A AL Sbjct: 186 RAQEPLTRTAQLANLIGSVVPRGKD-RSNPATRSFQAIRIHINRELADLEAGLDAALAAL 244 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 + GG L V+SFHSLEDR+VK+F A S A R + ++ V ++ + +E+ Sbjct: 245 RPGGRLAVISFHSLEDRMVKQFIARHSKAPPANRRLPEASVFVPVLAALGGAIRA-GEEE 303 Query: 300 VAFNRRSRSAKLR 312 + N R+RSA LR Sbjct: 304 LQVNVRARSAVLR 316 >gi|253583641|ref|ZP_04860839.1| S-adenosyl-methyltransferase mraW [Fusobacterium varium ATCC 27725] gi|251834213|gb|EES62776.1| S-adenosyl-methyltransferase mraW [Fusobacterium varium ATCC 27725] Length = 313 Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 110/310 (35%), Positives = 172/310 (55%), Gaps = 20/310 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+PVL + I L + LD T G GG+S K S +I++D+D A+ ++ Sbjct: 9 HIPVLYRESIDNLVINKDGIYLDCTLGGGGHSEGILKELSEKGRLISIDQDQQAIDFAKK 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + Y ++ +F+ F L + G +DG++ D+GVSS Q+D +RGFS++ L Sbjct: 69 RLEKYGNKWQVFKNNFENLDTVIYMAGYDKIDGILMDIGVSSTQLDDPERGFSYRYDTKL 128 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ + +SA +VVN+ + + L +IL GEE+ + RIA I + R+ +TT +L Sbjct: 129 DMRMNQNNSLSAYEVVNEYSEEALMKILFEYGEERNSRRIAKFICEAREIKKIETTGELV 188 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++I++ + + HPA ++FQA+RI VN E+E L + + A +LK GG L +++FHS Sbjct: 189 AIIKRA--YPERAAKHPAKKTFQAIRIEVNRELEVLEKAIDKAVDSLKIGGRLGIITFHS 246 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSN------AHPAVFQSITKKVVVPTQEDVAFNRRS 306 LEDRLVK F K +A P A + ITKK ++P +V FN R+ Sbjct: 247 LEDRLVKTKF-----KDLATACKCPPGLPICVCGGKAKVKLITKKPIIPEGNEVEFNNRA 301 Query: 307 RSAKLRAGMR 316 S+KLR R Sbjct: 302 HSSKLRVVER 311 >gi|332829620|gb|EGK02266.1| ribosomal RNA small subunit methyltransferase H [Dysgonomonas gadei ATCC BAA-286] Length = 300 Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 111/301 (36%), Positives = 168/301 (55%), Gaps = 16/301 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+P LL + + +N G + +D TFG GG+S+ N + A D+D A++ QE Sbjct: 3 HIPALLHESVDGMNIRTGSICVDVTFGGGGHSKEILSHLGNKGHLYAFDQDEDAINNIQE 62 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQ-KSGP 132 + F+ ++ F L++++ GV D ++ DLGVSS D DRGFSF+ + Sbjct: 63 DSK-----FTFIRSNFRFLKNFIKYHGVEEVDAILADLGVSSHHFDAEDRGFSFRFEDSD 117 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ +G +A+ ++N + L I + GE K + RIA AIVK R+ P++ DL Sbjct: 118 LDMRMNQKAGKTAAQILNTYTEEQLADIFYLYGELKPSRRIASAIVKTRKEKPYRKVSDL 177 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + V + + ++FQALRI VN E+E L + L A LK GG L+V+++H Sbjct: 178 LDTLNSFVGRGEKEK-KVLAQAFQALRIEVNEEMETLKEMLEQALDILKPGGRLVVITYH 236 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDRLVK FF + + + + + P F+ I KV+VP++E+ N RSRSAKL Sbjct: 237 SLEDRLVKNFFKTGNFEGKVEKDFFGNFETP--FKLINNKVIVPSREEEERNPRSRSAKL 294 Query: 312 R 312 R Sbjct: 295 R 295 >gi|109914373|sp|Q5XAL3|RSMH_STRP6 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 316 Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 109/308 (35%), Positives = 175/308 (56%), Gaps = 12/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGS--NVIALDRDPFAVSCGQE 76 HV VLL + + +L+ P + +DAT G G+S K+G ++ D+D A+ Q Sbjct: 7 HVTVLLHETVDMLDIKPDGIYVDATLGGSGHSAYLLSKLGEEGHLYCFDQDQKAIDNAQV 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSG 131 T++ Y K Q + + F L+ + GVD G+++DLGVSS Q+D +RGFS+++ Sbjct: 67 TLKSYIDKGQVTFIKDNFRHLKARLTALGVDEIDGILYDLGVSSPQLDERERGFSYKQDA 126 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S ++A +VVN DL +I GE+K + +IA I + R P +TT + Sbjct: 127 PLDMRMDRQSLLTAYEVVNTYPFNDLVKIFFKYGEDKFSKQIARKIEQARAIKPIETTTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ LI+ + + HPA + FQA+RI VN+E+ + ++ A + L G + V++ Sbjct: 187 LAELIKAAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQEAMELLALDGRISVIT 246 Query: 250 FHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDRL K+ F S V +IP + P F+ +++K ++P+ ++A N+R+ S Sbjct: 247 FHSLEDRLTKQLFKEASTVDVPKGLPLIPEDMKPK-FELVSRKPILPSHSELAANKRAHS 305 Query: 309 AKLRAGMR 316 AKLR + Sbjct: 306 AKLRVAKK 313 >gi|55821677|ref|YP_140119.1| S-adenosyl-methyltransferase MraW [Streptococcus thermophilus LMG 18311] gi|55737662|gb|AAV61304.1| S-adenosylmethionine-dependent methyltransferase, putative [Streptococcus thermophilus LMG 18311] Length = 354 Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 114/323 (35%), Positives = 176/323 (54%), Gaps = 19/323 (5%) Query: 6 CKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVI 62 K M++ HH V VLL + + +L+ P + +DAT G G+S S ++ Sbjct: 36 IKIMTNEFHH-----VTVLLHETVDMLDIKPDGIYVDATLGGAGHSSYLLSQLSEKGHLY 90 Query: 63 ALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQ 117 D+D A+ Q ++DY K + + F L+ + GV DG+++DLGVSS Q Sbjct: 91 CFDQDQKAIDNAQVRLKDYIDKGMVTFIKDNFRNLKSNLEALGVSEIDGILYDLGVSSPQ 150 Query: 118 IDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 +D +RGFS+++ LDMRM+ + ++A DVVN DL RI GE+K + +IA I Sbjct: 151 LDERERGFSYKQDAKLDMRMNEEASLTAYDVVNTYPYNDLVRIFFKYGEDKFSKQIARKI 210 Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRS 234 + RQ P +TT +L+ +I K+ +K + HPA + FQA+RI VN+E+ + ++ Sbjct: 211 EQARQVKPIETTTELAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQE 269 Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVV 293 A L G + V++FHSLEDRL K+ F S V IP + P V + +K + Sbjct: 270 ALDLLAVNGRISVITFHSLEDRLTKQLFKEASTADVPKGLPFIPEDLQPKV-ALVNRKPI 328 Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316 +P+QE++ N RS SAKLR + Sbjct: 329 LPSQEELEANNRSHSAKLRVAKK 351 >gi|282857251|ref|ZP_06266491.1| S-adenosyl-methyltransferase MraW [Pyramidobacter piscolens W5455] gi|282584901|gb|EFB90229.1| S-adenosyl-methyltransferase MraW [Pyramidobacter piscolens W5455] Length = 313 Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 116/304 (38%), Positives = 164/304 (53%), Gaps = 23/304 (7%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76 +HVPVLL KV+ ++ +I+D T G GGYS +F K V+ +DRD A + + Sbjct: 4 EHVPVLLAKVVESMDLKADALIVDGTLGLGGYSEAFLKRSPRWRVVGIDRDERARNIACQ 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + E+F F + G VD VV DLGVS+MQ+ G RGFSF++ GPL Sbjct: 64 RLAPFGERFLALDGDFRNIGGLCASVGIRAVDCVVLDLGVSNMQLADGRRGFSFREDGPL 123 Query: 134 DMRMS-CSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 DMRM+ G SAS++VN+ + L I GEE+ A IA IVK R P +T +L Sbjct: 124 DMRMNPAEGTRSASELVNELPRESLADIFRKYGEERFAWSIAGEIVKERLKRPITSTAEL 183 Query: 192 SSLIQKTVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 +I++ + ++ HPA + FQALR+ VN+E+ L QGL A L G L+VV+ Sbjct: 184 VEVIRRGIPAPVMRKMNGHPARKVFQALRVAVNDELGALEQGLDEAFSLLAEEGRLLVVT 243 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 +HSLEDR+VK+ F + + V +K VP E+V N +SRSA Sbjct: 244 YHSLEDRIVKRRFREWNEEGKGVLE--------------PRKGQVPDDEEVERNPKSRSA 289 Query: 310 KLRA 313 +LR Sbjct: 290 RLRG 293 >gi|183983192|ref|YP_001851483.1| methyltransferase [Mycobacterium marinum M] gi|262825131|sp|B2HGS5|RSMH_MYCMM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|183176518|gb|ACC41628.1| methyltransferase [Mycobacterium marinum M] Length = 345 Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 115/312 (36%), Positives = 174/312 (55%), Gaps = 18/312 (5%) Query: 20 HVPVLLEKVIALLNPAPGK--------VILDATFGAGGYSRSFCKM--GSNVIALDRDPF 69 HVPVL ++ + LL PA + V++DAT GAGG++ F G +I LDRDP Sbjct: 15 HVPVLAQRCVELLRPALTRHHADGSEAVLVDATIGAGGHAERFLTELPGLRLIGLDRDPS 74 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSSMQIDCGDR 123 A+ + + + ++ +L + L + + G +DG +FDLGVSSMQ+D +R Sbjct: 75 ALEIVRTRLARFADRVTLVHTRYDGLASALTELGYGAAQSIDGALFDLGVSSMQLDQAER 134 Query: 124 GFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GF++ K PLDMRM+ S +SA+D++N + L IL GEE+ A RIA I++RR Sbjct: 135 GFAYSKDAPLDMRMNPQSALSAADIINTYDEAALADILHRYGEERFARRIAARIIRRRAD 194 Query: 183 APFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 PF TT +L +L+ + + ++ HPA R+FQALRI VN+E+ L + +A AL Sbjct: 195 KPFTTTAELVALLYEAIPAAARRTGGHPAKRTFQALRIAVNDELGSLRSAIPAAMDALAV 254 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 GG ++V+++ SLEDR+VK+ FA + + H F+S+T +V Sbjct: 255 GGRIVVMAYQSLEDRIVKRVFADAVASRTPMDLPVELPGHGPRFRSLTHGAERADAAEVE 314 Query: 302 FNRRSRSAKLRA 313 N RS +LRA Sbjct: 315 RNPRSAPVRLRA 326 >gi|150003970|ref|YP_001298714.1| S-adenosyl-methyltransferase MraW [Bacteroides vulgatus ATCC 8482] gi|294778005|ref|ZP_06743439.1| S-adenosyl-methyltransferase MraW [Bacteroides vulgatus PC510] gi|263445994|sp|A6L078|RSMH_BACV8 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|149932394|gb|ABR39092.1| S-adenosyl-methyltransferase MraW [Bacteroides vulgatus ATCC 8482] gi|294448063|gb|EFG16629.1| S-adenosyl-methyltransferase MraW [Bacteroides vulgatus PC510] Length = 304 Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 113/300 (37%), Positives = 169/300 (56%), Gaps = 16/300 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76 HVPVLL + + +N PG + +DATFG GG+S+ S +++ + D+D + Sbjct: 9 HVPVLLNESVDGMNIQPGGIYVDATFGGGGHSKEILSRLDSTAHLYSFDQDE---DAEKN 65 Query: 77 TMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + D +F+ ++ F L + Y +GVD ++ DLGVSS D +RGFSF+ G L Sbjct: 66 IVSD--SRFTFVRSNFRYLPNFLRYYGVEGVDAILADLGVSSHHFDDSERGFSFRFEGKL 123 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +G++A+DVVN + + L I + GE K + ++A AIVK R T D Sbjct: 124 DMRMNKRAGMTAADVVNTYDEERLANIFYLYGELKNSRKLASAIVKARGVKQIVTIGDFL 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ F + + FQALRI VN E+E L + L +A KALK GG L+V+++HS Sbjct: 184 EVIKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLYAATKALKPGGRLVVITYHS 241 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK + + + A + + P F+ + KV+V E+V N RSRSAKLR Sbjct: 242 LEDRMVKNIMKTGNIEGKAEQDFFGNVQTP--FKLVNNKVIVAGNEEVTRNPRSRSAKLR 299 >gi|227486691|ref|ZP_03917007.1| S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Anaerococcus lactolyticus ATCC 51172] gi|227235279|gb|EEI85294.1| S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Anaerococcus lactolyticus ATCC 51172] Length = 309 Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 108/306 (35%), Positives = 165/306 (53%), Gaps = 12/306 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 +H PVL + I LN P + D T G GG+S+ + S +I +D+D A+ Sbjct: 7 EHTPVLYRECIENLNIKPDGIYADLTLGKGGHSKLILEKLSAKGLLIGIDQDKAAIEAAS 66 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E ++DY + F F + + + G +DG + D+GVSS QID +RGFS+ GP Sbjct: 67 ENLKDYDNKV-FFNTNFENIGKVLTEAGFNKIDGALMDIGVSSYQIDNPERGFSYIHDGP 125 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ ++A +VN+ + +LTRI GEE+ + IA IVK R + TT L Sbjct: 126 LDMRMNRQNELTAEKIVNECSQDELTRIFFDYGEERFSKAIAKNIVKARANERINTTFKL 185 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +++ K+ F++ +HP R FQALRI VN E++ L + + + + G L +++FH Sbjct: 186 RNIVMKSARFTE---VHPEKRVFQALRIEVNRELDVLTKAIDTIIDFIDKDGRLAIITFH 242 Query: 252 SLEDRLVK-KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK KF +G + + H A + ITKK + +++ N RS+ AK Sbjct: 243 SLEDRIVKNKFKDLATGCICPPEIPVCVCNHVAKVKIITKKPITAKADELRENSRSKPAK 302 Query: 311 LRAGMR 316 LR R Sbjct: 303 LRVCQR 308 >gi|195953230|ref|YP_002121520.1| S-adenosyl-methyltransferase MraW [Hydrogenobaculum sp. Y04AAS1] gi|263456148|sp|B4U8T1|RSMH_HYDS0 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|195932842|gb|ACG57542.1| S-adenosyl-methyltransferase MraW [Hydrogenobaculum sp. Y04AAS1] Length = 296 Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 105/302 (34%), Positives = 174/302 (57%), Gaps = 28/302 (9%) Query: 20 HVPVLLEKVIALL-NPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++V L NP P K+ +DAT G GG++++ ++ + +I +D+D A+ +E Sbjct: 2 HKSVLLKEVTDFLSNPCP-KIHIDATLGLGGHAKALLEVCKDTFLIGIDKDENAIEIAKE 60 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ + F + +F + ++G+ D ++FD GVSS+Q+D + GFSFQ+ L Sbjct: 61 KLKGFNAVF--YHGSFKDFDIVLKEEGLLYFDSILFDFGVSSLQLD-EEEGFSFQREDFL 117 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM +A V+N K+L I GEE+ + +IA +IV++R+ P +TT++L Sbjct: 118 DMRMDKRQQKTAYIVINTYKEKELADIFYKYGEERLSKKIARSIVEKRKKKPIETTKELV 177 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++ + Y K ++I+PAT+ FQALRI VN+E+E++ L K G +SFHS Sbjct: 178 DIVS-SCYPYKYSKINPATKVFQALRIEVNSELEDIKIALSKLLDFAKEGSKFAFISFHS 236 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDRLVK+F + + K+ + +KK + P+ E++ +N+R+RSAKLR Sbjct: 237 LEDRLVKEFIKNNADKL----------------KVCSKKPITPSDEELLYNKRARSAKLR 280 Query: 313 AG 314 Sbjct: 281 CA 282 >gi|223933600|ref|ZP_03625580.1| S-adenosyl-methyltransferase MraW [Streptococcus suis 89/1591] gi|253752421|ref|YP_003025562.1| S-adenosyl-methyltransferase MraW [Streptococcus suis SC84] gi|253754247|ref|YP_003027388.1| S-adenosyl-methyltransferase MraW [Streptococcus suis P1/7] gi|253756181|ref|YP_003029321.1| S-adenosyl-methyltransferase MraW [Streptococcus suis BM407] gi|302024366|ref|ZP_07249577.1| S-adenosyl-methyltransferase MraW [Streptococcus suis 05HAS68] gi|330833363|ref|YP_004402188.1| S-adenosyl-methyltransferase MraW [Streptococcus suis ST3] gi|262827260|sp|C6GW75|RSMH_STRS4 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262827309|sp|C5VZR6|RSMH_STRSE RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262827338|sp|C6GPU1|RSMH_STRSX RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262831434|sp|A4VX71|RSMH_STRSY RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262831441|sp|A4W3H4|RSMH_STRS2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|223897726|gb|EEF64107.1| S-adenosyl-methyltransferase MraW [Streptococcus suis 89/1591] gi|251816710|emb|CAZ52352.1| S-adenosyl-methyltransferase MraW [Streptococcus suis SC84] gi|251818645|emb|CAZ56480.1| S-adenosyl-methyltransferase MraW [Streptococcus suis BM407] gi|251820493|emb|CAR47246.1| S-adenosyl-methyltransferase MraW [Streptococcus suis P1/7] gi|319758827|gb|ADV70769.1| S-adenosyl-methyltransferase MraW [Streptococcus suis JS14] gi|329307586|gb|AEB82002.1| S-adenosyl-methyltransferase MraW [Streptococcus suis ST3] Length = 316 Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 110/310 (35%), Positives = 171/310 (55%), Gaps = 14/310 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 +H VLL + + +L+ P + +DAT G G+S G ++ A D+D A+ Sbjct: 6 NHTTVLLHETVDMLDIKPNGIYVDATLGGAGHSEYLLSQLTDGGHLYAFDQDQTAIDHAH 65 Query: 76 ETMRDYKE--QFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130 + Y E Q + + F L+ + + GV DG+ +DLGVSS Q+D +RGFS+++ Sbjct: 66 IRLASYIEKGQVTFIRDNFRNLKTRLAELGVTEIDGICYDLGVSSPQLDERERGFSYKQD 125 Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM+ G ++A DVVN + DL RI GE+K + +IA I + R P +TT Sbjct: 126 APLDMRMNREGHLTAYDVVNNYDYHDLVRIFFKYGEDKFSKQIARKIEQARAVKPIETTT 185 Query: 190 DLSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L+ LI K+ +K + HPA + FQA+RI VN+E+ + ++ A L G + V Sbjct: 186 ELAELI-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDLLALDGRISV 244 Query: 248 VSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 ++FHSLEDRL K+ F S V IP + A + + +K ++P+QE++ N R+ Sbjct: 245 ITFHSLEDRLTKQLFKEASTIDVPKGLPFIPDDL-KAPLELVNRKPILPSQEELEANNRA 303 Query: 307 RSAKLRAGMR 316 SAKLR + Sbjct: 304 HSAKLRVAKK 313 >gi|169831601|ref|YP_001717583.1| S-adenosyl-methyltransferase MraW [Candidatus Desulforudis audaxviator MP104C] gi|263446209|sp|B1I4D9|RSMH_DESAP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|169638445|gb|ACA59951.1| S-adenosyl-methyltransferase MraW [Candidatus Desulforudis audaxviator MP104C] Length = 324 Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 113/308 (36%), Positives = 171/308 (55%), Gaps = 19/308 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQE 76 H PV+L +V+ L+P PG +D T G GG++ ++G ++ +DRD A++ Sbjct: 8 HQPVMLREVLEWLDPKPGGTYVDCTLGGGGHALGVLERIGGRGLLVGIDRDADALAAAAF 67 Query: 77 TMRDYKEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + Y + L QA F +L + V G+++DLGVSS Q+D RGF +Q+ PL Sbjct: 68 RLAGYGDGVRLVQADFRELAAVLRRLETGPVQGILYDLGVSSHQLDTASRGFGYQQDAPL 127 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM G++A+D+VN+ +L+ ++ GEE+ + RIA I + R+ P TT L+ Sbjct: 128 DMRMDPGGGVTAADLVNRLPEDELSDLIKAYGEERWSRRIAAFIARERKREPILTTGRLA 187 Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I++ V ++ HPA R+FQALRI VN+E+ L L A L AGG ++V+S+H Sbjct: 188 EVIKEAVPARARRTGPHPARRTFQALRIAVNDELGALKTSLHQAVDLLDAGGRVVVLSYH 247 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPA------VFQSITKKVVVPTQEDVAFNRR 305 SLEDRLVK F + AV P +T + VP ++++A N R Sbjct: 248 SLEDRLVKDTF-----REFAVHCKCPPGLPECRCGVVPRLDILTSRPRVPGEDEIAANPR 302 Query: 306 SRSAKLRA 313 +RSAKLRA Sbjct: 303 ARSAKLRA 310 >gi|146319398|ref|YP_001199110.1| S-adenosyl-methyltransferase MraW [Streptococcus suis 05ZYH33] gi|146321602|ref|YP_001201313.1| S-adenosyl-methyltransferase MraW [Streptococcus suis 98HAH33] gi|145690204|gb|ABP90710.1| Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Streptococcus suis 05ZYH33] gi|145692408|gb|ABP92913.1| Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Streptococcus suis 98HAH33] gi|292559026|gb|ADE32027.1| methyltransferase [Streptococcus suis GZ1] Length = 323 Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 110/310 (35%), Positives = 171/310 (55%), Gaps = 14/310 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 +H VLL + + +L+ P + +DAT G G+S G ++ A D+D A+ Sbjct: 13 NHTTVLLHETVDMLDIKPNGIYVDATLGGAGHSEYLLSQLTDGGHLYAFDQDQTAIDHAH 72 Query: 76 ETMRDYKE--QFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130 + Y E Q + + F L+ + + GV DG+ +DLGVSS Q+D +RGFS+++ Sbjct: 73 IRLASYIEKGQVTFIRDNFRNLKTRLAELGVTEIDGICYDLGVSSPQLDERERGFSYKQD 132 Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM+ G ++A DVVN + DL RI GE+K + +IA I + R P +TT Sbjct: 133 APLDMRMNREGHLTAYDVVNNYDYHDLVRIFFKYGEDKFSKQIARKIEQARAVKPIETTT 192 Query: 190 DLSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L+ LI K+ +K + HPA + FQA+RI VN+E+ + ++ A L G + V Sbjct: 193 ELAELI-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDLLALDGRISV 251 Query: 248 VSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 ++FHSLEDRL K+ F S V IP + A + + +K ++P+QE++ N R+ Sbjct: 252 ITFHSLEDRLTKQLFKEASTIDVPKGLPFIPDDL-KAPLELVNRKPILPSQEELEANNRA 310 Query: 307 RSAKLRAGMR 316 SAKLR + Sbjct: 311 HSAKLRVAKK 320 >gi|310287093|ref|YP_003938351.1| S-adenosyl-methyltransferase MraW [Bifidobacterium bifidum S17] gi|309251029|gb|ADO52777.1| S-adenosyl-methyltransferase MraW [Bifidobacterium bifidum S17] Length = 370 Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 114/306 (37%), Positives = 168/306 (54%), Gaps = 15/306 (4%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74 H PVLLE+ ++L+ PA PG + +D T G G++ +F K + V+ +DRD A++ Sbjct: 8 HQPVLLEQCVSLVAPALQDPGSIAVDCTLGLAGHTIAFLKAAPQARVLGIDRDAEALAMA 67 Query: 75 QETM--RDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQK 129 E + ++F A F + D+G+D V DLG+SS+QID DRGFS+ Sbjct: 68 TERIAGEGLSDRFIPVHAAFDAFGQVLDDQGIDRVNAVFMDLGLSSLQIDETDRGFSYAH 127 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM S ++A V+ + ++L RI GEE+ + +IA IV+RR P T+ Sbjct: 128 DAPLDMRMDVSQPLTAQRVLAEYPERELVRIFRAYGEERFSRQIAREIVRRRAQEPLTTS 187 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ L+ + V + +PA R FQALRI VN E+++LA L L G L+V Sbjct: 188 AQLNRLVDEVVPQAHRPAGNPAKRVFQALRIEVNGELDKLAGTLPQIACRLAPNGRLVVE 247 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 S+HSLED+ VK F + +V A M IP +A P F +T+ V +++A N RS Sbjct: 248 SYHSLEDKTVKSFM-NEGLRVDAPADMPVIPDDAQP-FFAPLTRGAVQSGPDEIAANPRS 305 Query: 307 RSAKLR 312 S +LR Sbjct: 306 ASVRLR 311 >gi|295104209|emb|CBL01753.1| S-adenosyl-methyltransferase MraW [Faecalibacterium prausnitzii SL3/3] Length = 321 Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 112/304 (36%), Positives = 167/304 (54%), Gaps = 12/304 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-----KMGSNVIALDRDPFAVSC 73 +H+PVLL + + L P LD T G G+SR G +I+LD+DP AV Sbjct: 15 EHIPVLLNECLTGLAIDPAGTYLDGTAGGAGHSRQIALRLDAAKGGRLISLDQDPDAVQT 74 Query: 74 GQETMRDYKEQFSLFQATF---SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + ++ Q F Q + + + ++G + DLGVSS Q+D RGFS++ Sbjct: 75 ARSRLAGLPA--TVVQINFRYAGQALEQLGIEKINGALLDLGVSSHQLDDAARGFSYRAD 132 Query: 131 GPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRMS G +A+D+VN + ++L RIL GEE A +IA IV+ R++AP TT Sbjct: 133 APLDMRMSQQGETAADLVNTESREELARILRDYGEEPYAWQIAGKIVETRETAPILTTLQ 192 Query: 191 LSSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ ++ + ++ + +P+ R+FQALRI VN+E++ L +GL + L GG L V++ Sbjct: 193 LADIVASAMPPAERRKNKNPSRRTFQALRIAVNHELDALEEGLDTIFDHLAPGGRLCVIT 252 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDRLVK F S + A + IT+K + +++ NRRSRS Sbjct: 253 FHSLEDRLVKNKFRRWSTACTCPPEFPVCVCGGKAKAKLITRKPIEADTQELEENRRSRS 312 Query: 309 AKLR 312 A LR Sbjct: 313 AHLR 316 >gi|332969039|gb|EGK08079.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Kingella kingae ATCC 23330] Length = 321 Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 114/311 (36%), Positives = 173/311 (55%), Gaps = 18/311 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQ 75 +H+ VLL + +A LN P V +D TFG GG+SR ++G +I D+DP A+ Q Sbjct: 7 EHITVLLHEAVAALNIQPNGVYVDGTFGRGGHSRLILSQLGEQGRLIVFDKDPQAIEVAQ 66 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + + S+ F+ + + G +DG +FDLG+SS Q+D G RGFSF+ P Sbjct: 67 K-LAQQDARVSVVHNGFATFEAACTNLGLDKIDGALFDLGISSPQVDDGSRGFSFRFDAP 125 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G SA++ + A+ +++ ++ GEE+ + +IA IV +R +P TT+ L Sbjct: 126 LDMRMDTTRGQSAAEWLAVASEQEIHEVIKNYGEERFSRQIARTIVAQRSESPINTTRQL 185 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +++ + V S+ ATR+FQA+RIF+N E++E+ Q L L GG L V++FH Sbjct: 186 AAITAQCVR-SRERGQDRATRTFQAIRIFINRELDEVEQVLPQVVNRLNVGGRLAVIAFH 244 Query: 252 SLEDRLVKKFFASRSG-----KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 SLEDR+VK+F S K A++ ++ Q I K QE V N R+ Sbjct: 245 SLEDRIVKQFMRQHSSHAPLPKWAAIKE---ADLPQPPLQLIGKASKASVQE-VQHNPRA 300 Query: 307 RSAKLRAGMRT 317 RSA LR RT Sbjct: 301 RSAVLRVAERT 311 >gi|237785335|ref|YP_002906040.1| S-adenosyl-methyltransferase [Corynebacterium kroppenstedtii DSM 44385] gi|263446144|sp|C4LI42|RSMH_CORK4 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|237758247|gb|ACR17497.1| S-adenosyl-methyltransferase [Corynebacterium kroppenstedtii DSM 44385] Length = 390 Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 116/324 (35%), Positives = 179/324 (55%), Gaps = 29/324 (8%) Query: 20 HVPVLLEKVIALLNP---------APGKVILDATFGAGGYSRSFCKM--GSNVIALDRDP 68 HVPV+LE+++ L+ P AP VILD T GAGG++ SF + + VI +DRD Sbjct: 11 HVPVMLERMVELIAPTVTESSENSAP-SVILDGTLGAGGHTESFLERFPSAMVIGVDRDK 69 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD-----------KGVDGVVFDLGVSSMQ 117 +S E + ++++F A F + + D G+ FDLGVSSMQ Sbjct: 70 KELSRTTERLSRFQDRFYPVHARFDNFDEALDDADHPVVDAFDAHGLSAGFFDLGVSSMQ 129 Query: 118 IDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 +D DRGF+++ GPLDMRM S G +A+DV+N + +L RIL G+E+ A +A AI Sbjct: 130 LDQVDRGFTYRDDGPLDMRMDTSTGKTAADVLNTYSHGELARILKTYGDERFAGPLARAI 189 Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 V+ R+ P+ T+Q L LI T+ S + + HPA R+FQALR+ VN E++ L + + Sbjct: 190 VREREKEPWSTSQRLVDLIYATIPASARRHGGHPAKRTFQALRVEVNAELDALRRVIPKV 249 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVV 293 L GG + +S+ SLED++VK+ A + S + +P++A F +T+ Sbjct: 250 CSYLHLGGRAVFMSYQSLEDKIVKRELAALTESKTPPGLPIDLPNSA--PDFHLVTRGSE 307 Query: 294 VPTQEDVAFNRRSRSAKLRAGMRT 317 +++ N R+ S ++RA RT Sbjct: 308 KADEQENNKNPRAHSVRVRAVERT 331 >gi|288553170|ref|YP_003425105.1| S-adenosyl-methyltransferase MraW [Bacillus pseudofirmus OF4] gi|288544330|gb|ADC48213.1| S-adenosyl-methyltransferase MraW [Bacillus pseudofirmus OF4] Length = 311 Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 110/303 (36%), Positives = 168/303 (55%), Gaps = 11/303 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 HV VL E+ + L P + +D T G G+S + ++ + A D+D A+S +E Sbjct: 4 HVTVLKEESVNGLAIKPDGIYVDCTLGGAGHSSLILEQLNDEGHLYAFDQDDTALSNAEE 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + YK +F+L ++ F L++ + G VDGV+FDLGVSS Q+D +RGFS+ + L Sbjct: 64 VLAPYKGKFTLIRSNFRFLREELAKHGISKVDGVLFDLGVSSPQLDEAERGFSYHQDAAL 123 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + ++A VVN+ L I+ GEEK A +IA I RR+ +TT +L Sbjct: 124 DMRMDQTAPLTAHQVVNEWEFNRLVSIISRYGEEKFAKQIARKIEARREIKTIETTGELV 183 Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + ++ HPA R+FQA+RI VN+E+ + L A G + V++FH Sbjct: 184 EIIKDAIPAPARRTGGHPAKRTFQAIRIAVNDELGSFEEALEDAITITNPKGRICVITFH 243 Query: 252 SLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDRL K+ F +S + +IP P + + IT+K +V E++ N R+RSA Sbjct: 244 SLEDRLCKEIFKEKSKGPDLPPGLPVIPEGFEPEL-KLITRKPIVAGNEELTANNRARSA 302 Query: 310 KLR 312 KLR Sbjct: 303 KLR 305 >gi|284039278|ref|YP_003389208.1| S-adenosyl-methyltransferase MraW [Spirosoma linguale DSM 74] gi|283818571|gb|ADB40409.1| S-adenosyl-methyltransferase MraW [Spirosoma linguale DSM 74] Length = 301 Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 114/299 (38%), Positives = 161/299 (53%), Gaps = 13/299 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77 H PVLL+ I LN PG +D TFG GG+SR G + D+D A + Q Sbjct: 5 HEPVLLQACIDGLNLQPGGTYVDITFGGGGHSREILNQLEGGKLFGFDQDADARANAQAI 64 Query: 78 MRDYKEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + + + F ++ Y+ + VDG++ DLG+SS QID +RGFS + LD Sbjct: 65 G---DSRLTFVASNFRNIKRYLRLYKAEQVDGILADLGISSHQIDTPERGFSTRFDADLD 121 Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM+ + +A VVN+ +L RILG+ GE A A A+V R + P +T DL + Sbjct: 122 MRMNQNADKTARQVVNEYPEAELHRILGMYGEITNARTAAAALVSARSNRPLKTVNDLKA 181 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 +Q+ K N+ + FQALRI VN E++ L + L LK GG L+V+S+HSL Sbjct: 182 ALQRLAPRGKENKYF--AQVFQALRIEVNEELQALEEFLEQVPDILKPGGRLVVMSYHSL 239 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 EDRLVK F + + + ++ P QSIT+K V T E++A N R+RSAKLR Sbjct: 240 EDRLVKNFINKGKFQGEVEKDLFGNDLKP--LQSITRKPVEATPEEIARNPRARSAKLR 296 >gi|237738955|ref|ZP_04569436.1| S-adenosyl-methyltransferase mraW [Fusobacterium sp. 2_1_31] gi|229423555|gb|EEO38602.1| S-adenosyl-methyltransferase mraW [Fusobacterium sp. 2_1_31] Length = 320 Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 105/309 (33%), Positives = 174/309 (56%), Gaps = 12/309 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+PVL + + L P V +D T G G +S + S+ ++++D+D A+ ++ Sbjct: 15 HIPVLYYETLDNLVINPDGVYIDCTLGGGSHSEGILERLSDKGLLLSIDQDSNAIEYSKK 74 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + Y ++ + + F + G VDG++ D+GVSS Q+D +RGFS++ L Sbjct: 75 RLEKYASKWKVLKGNFENIDTLAYMAGIDKVDGILMDIGVSSKQLDEAERGFSYRYDVKL 134 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +SA DVVN + ++L+RI+ GEE+ A +IA I + R+ P TT +L Sbjct: 135 DMRMNTDQKLSAYDVVNTYSEEELSRIIFEYGEERFARKIAKLICENRKIKPITTTFELV 194 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +LI++ + + HPA ++FQA+RI VN E+E L + A + LK GG L +++FHS Sbjct: 195 ALIRRA--YPERASKHPAKKTFQAIRIEVNRELEVLENAMSKAVELLKVGGRLGIITFHS 252 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRSAK 310 LEDR+VK F + + IP V F+ IT+K ++P ++++ N R+ S+K Sbjct: 253 LEDRIVKNKFKDLATACKCPKD-IPICMCGGVKKFEIITRKPIIPVEDELKNNNRAHSSK 311 Query: 311 LRAGMRTVE 319 LR R ++ Sbjct: 312 LRILERILD 320 >gi|282878018|ref|ZP_06286826.1| S-adenosyl-methyltransferase MraW [Prevotella buccalis ATCC 35310] gi|281299853|gb|EFA92214.1| S-adenosyl-methyltransferase MraW [Prevotella buccalis ATCC 35310] Length = 312 Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 115/305 (37%), Positives = 169/305 (55%), Gaps = 19/305 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVS---- 72 HVPVLL++ + LN P + +D TFG GG+S + +G N + + D+D A Sbjct: 10 HVPVLLQESVEGLNIQPDGIYVDVTFGGGGHSMQILRQLGENGHLFSFDQDLDAEKNIPQ 69 Query: 73 CGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 G E ++ ++ F+ ++ F L++ Y + +DG++ DLGVSS D RGFSF+ Sbjct: 70 AGNELLQ--QDNFTFVRSNFRYLKNWMRYYEIEQIDGLLADLGVSSHHFDDESRGFSFRF 127 Query: 130 SGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM+ + I+A+DVVN + + L + + GE K A RIA +VK R TT Sbjct: 128 DAPLDMRMNKTASITAADVVNTYSEERLADVFYLYGELKNARRIASLLVKARTEEMIVTT 187 Query: 189 QDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 QD IQ T F + + FQALRI VN+E+E L + L A++ L+ GG L V Sbjct: 188 QDF---IQATAPLFKREREKKDMAKLFQALRIEVNHEMESLKEMLEGAKQLLRPGGRLSV 244 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +++HSLEDR+VK + + + + P F I KKV+VP +++ N RSR Sbjct: 245 ITYHSLEDRIVKNMMKTGNVEGKMTQDFFGKITTP--FSLINKKVIVPAEDEQQRNPRSR 302 Query: 308 SAKLR 312 SAKLR Sbjct: 303 SAKLR 307 >gi|323466809|gb|ADX70496.1| Ribosomal RNA small subunit methyltransferase H [Lactobacillus helveticus H10] Length = 349 Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 116/311 (37%), Positives = 171/311 (54%), Gaps = 19/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76 H VLL + I L P G + +DATFG GG+++ S + G+ ++ D+D +A+ + Sbjct: 39 HTSVLLHETIDNLKPKNGGLYVDATFGGGGHAKYLLSKIETGT-LVGFDQDEYAIKSAEL 97 Query: 77 TMRDY-----KEQFSLFQATFSQL-QDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSF 127 D + + L FS L QD V G+DG+ +DLGVSS Q D DRGFS+ Sbjct: 98 NFADLLQPDSEPRLKLVHDNFSNLEQDLVKLGYSDGIDGIYYDLGVSSPQFDQADRGFSY 157 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + + LDMRM S A +VN + K+L IL G+EK + +IAH IV+RR+ P Sbjct: 158 RYNARLDMRMDQSQDTDAYQLVNTLSQKELADILYQYGDEKFSRQIAHRIVERRKDKPIV 217 Query: 187 TTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT L +I++ + +++ HPA +SFQALR+ VN+E++ L L A + L+ GG + Sbjct: 218 TTFQLVDIIKEAIPAYARRTGGHPAKKSFQALRVAVNHELDVLQASLEEAIRILRPGGRI 277 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFN 303 V++F S ED++VKK F S +V R M +P + P + K + T E + N Sbjct: 278 SVITFQSHEDKIVKKIFKKYS-EVEVPRGMPFVPDDMKPTLRLENRKPITASTSE-LENN 335 Query: 304 RRSRSAKLRAG 314 RS SAKLR Sbjct: 336 NRSHSAKLRVA 346 >gi|309776027|ref|ZP_07671019.1| S-adenosyl-methyltransferase MraW [Erysipelotrichaceae bacterium 3_1_53] gi|308916309|gb|EFP62057.1| S-adenosyl-methyltransferase MraW [Erysipelotrichaceae bacterium 3_1_53] Length = 311 Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 115/303 (37%), Positives = 166/303 (54%), Gaps = 11/303 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77 H VLL++ I L + +D T G GG+S ++ A DRD A+ +E Sbjct: 4 HYSVLLQESIDNLAIRSDGIYVDGTLGRGGHSAEILARIPQGHLYAFDRDASAIEESRER 63 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + +L + FS ++ + +GV DG+V DLGVSS Q D RGFS++ PLD Sbjct: 64 LTRIGSNVTLIHSNFSNVKSELEARGVTGIDGMVLDLGVSSPQFDEAQRGFSYRFDAPLD 123 Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM S +SA VVN+ ++L RI GEE A +IA I K R++ P +TT +L Sbjct: 124 MRMDQSQQLSAYQVVNEWEYQELVRIFFQFGEESFAKQIARKIEKARETKPIETTLELVD 183 Query: 194 LIQKTVYFSK--NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I K+ +K N + HPA + FQA+RI VN+E+ EL LR A L GG L V+SF Sbjct: 184 VI-KSALPAKVLNKKGHPAKKVFQAIRIAVNDELGELQMVLRDALALLHVGGRLCVISFQ 242 Query: 252 SLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK F + S + + +P + A ++ + KK + T++++ N RS SA Sbjct: 243 SLEDRIVKDTFVACSKPKQYDKRLPILPQDMEEAPYRLVNKKPITATEDELRENMRSHSA 302 Query: 310 KLR 312 KLR Sbjct: 303 KLR 305 >gi|116513827|ref|YP_812733.1| S-adenosyl-methyltransferase MraW [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116093142|gb|ABJ58295.1| SAM-dependent methyltransferase for cell envelope biogenesis [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 305 Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 109/302 (36%), Positives = 169/302 (55%), Gaps = 16/302 (5%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETM---- 78 + + I L P G +DATFG GG++R + N+I D+D +A+ Q Sbjct: 1 MHETIDNLAPQSGGTYVDATFGGGGHARYLLRKLDKGNLIGFDQDQYAIDTAQSNFAAFL 60 Query: 79 -RDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 D + + L FS L++ + G+DG+ +DLGVSS Q+D +RGFS++ LD Sbjct: 61 KEDSQPRLQLVHNNFSHLKEELAKLGISGIDGIYYDLGVSSPQLDQAERGFSYRFDARLD 120 Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM S A +VNQ + K L +L G+EK + +IA IV+RR+ P +TT +L Sbjct: 121 MRMDQSQDFDAYQLVNQYDQKQLADVLYRYGDEKFSRQIARKIVERRRGKPIETTFELVE 180 Query: 194 LIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I++ + + R HPA +SFQA+R+ VN+E++ L L A L GG + V++F S Sbjct: 181 IIKEAIPAAARRRGGHPAKKSFQAIRVEVNHELDVLRASLEEAISLLNPGGRISVITFQS 240 Query: 253 LEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 LED++VK+ F S +V R M +P P + + + +K + ++E++A N RS SAK Sbjct: 241 LEDKIVKQTFKKYS-EVEIPRGMPVVPEGIKPTL-RLVNRKSITASEEELAENNRSHSAK 298 Query: 311 LR 312 LR Sbjct: 299 LR 300 >gi|294784023|ref|ZP_06749345.1| S-adenosyl-methyltransferase MraW [Fusobacterium sp. 1_1_41FAA] gi|294479835|gb|EFG27614.1| S-adenosyl-methyltransferase MraW [Fusobacterium sp. 1_1_41FAA] Length = 314 Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 105/309 (33%), Positives = 174/309 (56%), Gaps = 12/309 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+PVL + + L P V +D T G G +S + S+ ++++D+D A+ ++ Sbjct: 9 HIPVLYYETLDNLVINPDGVYIDCTLGGGSHSEGILERLSDKGLLLSIDQDSNAIEYSKK 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + Y ++ + + F + G VDG++ D+GVSS Q+D +RGFS++ L Sbjct: 69 RLEKYASKWKVLKGNFENIDTLAYMAGIDKVDGILMDIGVSSKQLDEAERGFSYRYDVKL 128 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +SA DVVN + ++L+RI+ GEE+ A +IA I + R+ P TT +L Sbjct: 129 DMRMNTEQKLSAYDVVNTYSEEELSRIIFEYGEERFARKIAKLICENRKIKPITTTFELV 188 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +LI++ + + HPA ++FQA+RI VN E+E L + A + LK GG L +++FHS Sbjct: 189 ALIRRA--YPERASKHPAKKTFQAIRIEVNRELEVLENAMSKAVELLKVGGRLGIITFHS 246 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRSAK 310 LEDR+VK F + + IP V F+ IT+K ++P ++++ N R+ S+K Sbjct: 247 LEDRIVKNKFKDLATACKCPKD-IPICMCGGVKKFEIITRKPIIPIEDELKNNNRAHSSK 305 Query: 311 LRAGMRTVE 319 LR R ++ Sbjct: 306 LRILERILD 314 >gi|182417987|ref|ZP_02949294.1| S-adenosyl-methyltransferase MraW [Clostridium butyricum 5521] gi|237667344|ref|ZP_04527328.1| S-adenosyl-methyltransferase MraW [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378158|gb|EDT75693.1| S-adenosyl-methyltransferase MraW [Clostridium butyricum 5521] gi|237655692|gb|EEP53248.1| S-adenosyl-methyltransferase MraW [Clostridium butyricum E4 str. BoNT E BL5262] Length = 310 Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 108/303 (35%), Positives = 167/303 (55%), Gaps = 12/303 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 HV VLL + I LN + +D T G G+S K S +I +D+D A+ +E Sbjct: 5 HVSVLLNECIDGLNIKEDGIYVDCTLGGAGHSSHILKHLSKNGLLIGIDQDTDALKAAKE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++DY + + F + + + G VDG++ DLGVSS Q+D +RGFS+ + PL Sbjct: 65 RLKDY-DNVKYVHSNFYNIDSILNELGIEKVDGILMDLGVSSYQLDNAERGFSYMQDAPL 123 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ + SA ++N + ++L +I+ GEEK A RIA+ IV RR P +TT +L Sbjct: 124 DMRMNRDNDFSAYSIINDYSEEELYKIIRDYGEEKFAKRIANFIVNRRAEKPIETTFELV 183 Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + ++ HPA R+FQA+RI VN+E++ L + + L G + +++FH Sbjct: 184 DIIKAAIPAKARREGPHPAKRTFQAIRIEVNSELKILNKTIEDGVNRLNKDGRMAIITFH 243 Query: 252 SLEDRLVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK F R M P V + + KK + P++E++ N RSRSA Sbjct: 244 SLEDRIVKLKFRELENPCTCPREFPMCICGKKPLV-KVLNKKGIAPSKEEIEENPRSRSA 302 Query: 310 KLR 312 K+R Sbjct: 303 KVR 305 >gi|157364289|ref|YP_001471056.1| S-adenosyl-methyltransferase MraW [Thermotoga lettingae TMO] gi|262825835|sp|A8F758|RSMH_THELT RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|157314893|gb|ABV33992.1| S-adenosyl-methyltransferase MraW [Thermotoga lettingae TMO] Length = 292 Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 120/308 (38%), Positives = 174/308 (56%), Gaps = 32/308 (10%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77 HVPV++++V++ + G V LD T GAGG+S + + GS VI +D D +S ++ Sbjct: 5 HVPVMVKEVLSYFSNLRG-VFLDCTVGAGGHSEAILENIKGSVVIGIDVDEEILSVAKQR 63 Query: 78 MRDYKEQ--FSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 ++ Y+ + L +AT+ + Q + K V+G++ DLGVS++Q+ G+RGF+F GP Sbjct: 64 LKKYESEGRAKLLKATYVEAQRVLSQLGVKAVNGIIMDLGVSTLQLMKGERGFAFSSDGP 123 Query: 133 LDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQ-ASRIAHAIVKRRQSAPFQTTQD 190 LDMRM ++A D+VN L RI GEEK+ A RIA IVK R P +TT Sbjct: 124 LDMRMDKTQRLTAYDIVNFWQENQLRRIFFEYGEEKRYAGRIARFIVKNR---PVETTAK 180 Query: 191 LSSLIQKTVYFSKNN--RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L +I + + + R H ATR FQA+RI VNNE+E L L L G +IV+ Sbjct: 181 LVEVIARALPEKERRFRRRHFATRVFQAIRIAVNNELENLRNFLVQVPDILNQNGRIIVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDR+VK+ F RS + + V +T+K V P+ E+V N ++RS Sbjct: 241 SFHSLEDRIVKEAF--RSIQELDV---------------LTRKPVRPSLEEVRENPKARS 283 Query: 309 AKLRAGMR 316 AK+R R Sbjct: 284 AKMRIAER 291 >gi|313206538|ref|YP_004045715.1| s-adenosyl-methyltransferase mraw [Riemerella anatipestifer DSM 15868] gi|312445854|gb|ADQ82209.1| S-adenosyl-methyltransferase MraW [Riemerella anatipestifer DSM 15868] gi|315023521|gb|EFT36525.1| S-adenosyl-methyltransferase mraW [Riemerella anatipestifer RA-YM] gi|325336013|gb|ADZ12287.1| Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Riemerella anatipestifer RA-GD] Length = 297 Score = 173 bits (439), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 118/306 (38%), Positives = 172/306 (56%), Gaps = 19/306 (6%) Query: 20 HVPVLL-EKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCGQ 75 H VLL E V AL+ A G V +D TFG GG+SR S+ D+D A+ + Sbjct: 3 HQSVLLKESVDALVLNADG-VYVDCTFGGGGHSREIVSRLSSAGRHFGFDQDLDAL---E 58 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + D E+F++ F L++ + GV DG++ DLGVSS Q D +RGFS + P Sbjct: 59 NKLDD--ERFTIINQNFRFLENSLMLYGVTQVDGILADLGVSSHQFDAAERGFSTRSDAP 116 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ G++A VVN+ + L I GE ++A R+A +V R+S P +TT+DL Sbjct: 117 LDMRMNVMQGLNAQKVVNEYEEEHLADIFYHYGELREARRLARELVHYRKSKPIKTTEDL 176 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 S+ K + K N+ + FQA+RI VN E+E L + L A + LK GG L+V+S+H Sbjct: 177 KSVF-KYIPPHKQNKFF--AQLFQAIRIEVNQELEALKEMLEQAYRILKPGGRLVVISYH 233 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDRLVK+F ++G + F+ + K VPT+E++ N R+RSAK+ Sbjct: 234 SLEDRLVKRFL--KNGMFDGEPERDIYGNYTKAFELLQSKAFVPTEEEIEANSRARSAKM 291 Query: 312 RAGMRT 317 R G++ Sbjct: 292 RVGIKV 297 >gi|311063958|ref|YP_003970683.1| S-adenosyl-methyltransferase [Bifidobacterium bifidum PRL2010] gi|310866277|gb|ADP35646.1| MraW S-adenosyl-methyltransferase [Bifidobacterium bifidum PRL2010] Length = 370 Score = 173 bits (439), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 114/306 (37%), Positives = 168/306 (54%), Gaps = 15/306 (4%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74 H PVLLE+ ++L+ PA PG + +D T G G++ +F K + V+ +DRD A++ Sbjct: 8 HQPVLLEQCVSLVAPALQDPGSIAVDCTLGLAGHTIAFLKAAPQARVLGIDRDAEALAMA 67 Query: 75 QETM--RDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQK 129 E + ++F A F + D+G+D V DLG+SS+QID DRGFS+ Sbjct: 68 TERIAGEGLSDRFIPVHAAFDAFGQVLDDQGIDRVNAVFMDLGLSSLQIDETDRGFSYAH 127 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM S ++A V+ + ++L RI GEE+ + +IA IV+RR P T+ Sbjct: 128 DAPLDMRMDVSQPLTAQCVLAEYPERELVRIFRAYGEERFSRQIAREIVRRRAQEPLTTS 187 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ L+ + V + +PA R FQALRI VN E+++LA L L G L+V Sbjct: 188 AQLNRLVDEVVPQAHRPAGNPAKRVFQALRIEVNGELDKLAGTLPQIACRLAPNGRLVVE 247 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 S+HSLED+ VK F + +V A M IP +A P F +T+ V +++A N RS Sbjct: 248 SYHSLEDKTVKSFM-NEGLRVDAPADMPVIPDDAQP-FFAPLTRGAVQAGPDEIAANPRS 305 Query: 307 RSAKLR 312 S +LR Sbjct: 306 ASVRLR 311 >gi|160944903|ref|ZP_02092130.1| hypothetical protein FAEPRAM212_02419 [Faecalibacterium prausnitzii M21/2] gi|158444087|gb|EDP21091.1| hypothetical protein FAEPRAM212_02419 [Faecalibacterium prausnitzii M21/2] Length = 321 Score = 173 bits (439), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 112/304 (36%), Positives = 167/304 (54%), Gaps = 12/304 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-----KMGSNVIALDRDPFAVSC 73 +H+PVLL + + L P LD T G G+SR G +I+LD+DP AV Sbjct: 15 EHIPVLLNECLTGLAIDPAGTYLDGTAGGAGHSRQIALRLDAAKGGRLISLDQDPDAVQT 74 Query: 74 GQETMRDYKEQFSLFQATF---SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + ++ Q F Q + + + ++G + DLGVSS Q+D RGFS++ Sbjct: 75 ARSRLAGLPA--TVVQINFRYAGQALEQLGIEKINGALLDLGVSSHQLDDAARGFSYRAD 132 Query: 131 GPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRMS G +A+D+VN + ++L RIL GEE A +IA IV+ R++AP TT Sbjct: 133 APLDMRMSQQGETAADLVNTESREELARILRDYGEEPYAWQIAGKIVEARETAPILTTLQ 192 Query: 191 LSSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ ++ + ++ + +P+ R+FQALRI VN+E++ L +GL + L GG L V++ Sbjct: 193 LADIVASAMPPAERRKNKNPSRRTFQALRIAVNHELDALEEGLDTIFDHLAPGGRLCVIT 252 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDRLVK F S + A + IT+K + +++ NRRSRS Sbjct: 253 FHSLEDRLVKNKFRRWSTACTCPPEFPVCVCGGKAKAKLITRKPIEADTQELEENRRSRS 312 Query: 309 AKLR 312 A LR Sbjct: 313 AHLR 316 >gi|29840135|ref|NP_829241.1| S-adenosyl-methyltransferase MraW [Chlamydophila caviae GPIC] gi|33301363|sp|Q823N6|RSMH_CHLCV RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|29834483|gb|AAP05119.1| S-adenosyl-methyltransferase MraW [Chlamydophila caviae GPIC] Length = 297 Score = 173 bits (439), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 113/306 (36%), Positives = 166/306 (54%), Gaps = 24/306 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALD---RDPFAVSCGQE 76 H+PVL+ + ++ + + D T GAGG++ +F ++I+ D RD A+S +E Sbjct: 7 HIPVLVNECLSWFSDRNPRSFCDVTVGAGGHAEAFLSTYPSIISYDGSDRDATALSLARE 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ-KSGPLDM 135 + + ++ L A+F L + DG++ DLGVSSMQ+D RGFSFQ + LDM Sbjct: 67 RLEKFGDRVHLHHASFEDLAQDPKENVYDGILADLGVSSMQLDTLSRGFSFQGEDHDLDM 126 Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM S GI+AS+V+N ++L +I GEE +A+AIV R+ T +DL Sbjct: 127 RMDTSQGITASEVLNTLREEELGKIFREYGEEPHWKNVANAIVHFRRRKKIITVKDLKEA 186 Query: 195 IQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 + + +IHP T FQALR++VN E +L L SA + L G L+++SF S Sbjct: 187 TARVFPSYRLRKKIHPLTLIFQALRVYVNQEDVQLKVLLESAMRWLAPKGRLVIISFCSS 246 Query: 254 EDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 EDR VK FF A +SG + + +TKKVV+PT E++ N R RSAKL Sbjct: 247 EDRPVKWFFREAEKSG----------------LGKILTKKVVMPTYEEIRRNPRCRSAKL 290 Query: 312 RAGMRT 317 R +T Sbjct: 291 RCFEKT 296 >gi|228477291|ref|ZP_04061929.1| S-adenosyl-methyltransferase MraW [Streptococcus salivarius SK126] gi|228251310|gb|EEK10481.1| S-adenosyl-methyltransferase MraW [Streptococcus salivarius SK126] Length = 316 Score = 173 bits (439), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 112/309 (36%), Positives = 170/309 (55%), Gaps = 14/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 HV VLL + + +L+ P + +DAT G G+S S ++ D+D A+ Q Sbjct: 7 HVTVLLHETVDMLDIKPDGIYVDATLGGAGHSSYLLSQLSEKGHLYCFDQDQKAIDNAQV 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++DY K + + F L+ + GV DG+++DLGVSS Q+D DRGFS+++ Sbjct: 67 RLKDYIDKGMVTFIKDNFRNLKSNLEALGVSEIDGILYDLGVSSPQLDERDRGFSYKQDA 126 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM+ + ++A DVVN DL RI GE+K + +IA I + RQ P +TT + Sbjct: 127 KLDMRMNEEASLTAYDVVNTYPYNDLVRIFFKYGEDKFSKQIARKIEQARQVKPIETTTE 186 Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ +I K+ +K + HPA + FQA+RI VN+E+ + ++ A L G + V+ Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQEALDLLAVDGRISVI 245 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F S V IP P V + +K ++P+QE++ N RS Sbjct: 246 TFHSLEDRLTKQLFKEASTVDVPKGLPFIPEELQPKV-ALVNRKPILPSQEELEANNRSH 304 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 305 SAKLRVAKK 313 >gi|53711604|ref|YP_097596.1| S-adenosyl-methyltransferase MraW [Bacteroides fragilis YCH46] gi|253564345|ref|ZP_04841802.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 3_2_5] gi|115311579|sp|Q64ZL4|RSMH_BACFR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|52214469|dbj|BAD47062.1| S-adenosyl-methyltransferase MraW [Bacteroides fragilis YCH46] gi|251948121|gb|EES88403.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 3_2_5] gi|301161374|emb|CBW20914.1| putative S-adenosyl-methyltransferase [Bacteroides fragilis 638R] Length = 304 Score = 173 bits (439), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 109/300 (36%), Positives = 167/300 (55%), Gaps = 16/300 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HVPVLL++ + +N +P +D TFG GG+SR G ++ D+D + Sbjct: 9 HVPVLLKESVDAMNISPDGTYVDVTFGGGGHSREILSRLGDGGRLLGFDQDE---DAERN 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYV--PDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + D F+ ++ F L +++ D G VD ++ DLGVSS D +RGFSF+ G L Sbjct: 66 IVND--PHFTFVRSNFRYLHNFLRYHDIGEVDAILADLGVSSHHFDDSERGFSFRFDGKL 123 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +GI+A+DVVN + L I + GE K + ++A IVK R +T + Sbjct: 124 DMRMNKRAGITAADVVNTYEEERLADIFYLYGELKNSRKLASVIVKARTGQKIETIGEFL 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ F + + FQALRI VN E+E L + L +A +ALK GG L+V+++HS Sbjct: 184 EIIKP--LFGREREKKELAKVFQALRIEVNQEMEALKEMLMAATEALKPGGRLVVITYHS 241 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK + + + A + + P F+ + KV+VP ++++ N RSRSAKLR Sbjct: 242 LEDRMVKNIMKTGNVEGKATQDFFGNLQTP--FRLVNNKVIVPDEDEITRNPRSRSAKLR 299 >gi|68565437|sp|Q5M2U6|RSMH_STRT2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 316 Score = 173 bits (439), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 111/309 (35%), Positives = 171/309 (55%), Gaps = 14/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 HV VLL + + +L+ P + +DAT G G+S S ++ D+D A+ Q Sbjct: 7 HVTVLLHETVDMLDIKPDGIYVDATLGGAGHSSYLLSQLSEKGHLYCFDQDQKAIDNAQV 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++DY K + + F L+ + GV DG+++DLGVSS Q+D +RGFS+++ Sbjct: 67 RLKDYIDKGMVTFIKDNFRNLKSNLEALGVSEIDGILYDLGVSSPQLDERERGFSYKQDA 126 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM+ + ++A DVVN DL RI GE+K + +IA I + RQ P +TT + Sbjct: 127 KLDMRMNEEASLTAYDVVNTYPYNDLVRIFFKYGEDKFSKQIARKIEQARQVKPIETTTE 186 Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ +I K+ +K + HPA + FQA+RI VN+E+ + ++ A L G + V+ Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQEALDLLAVNGRISVI 245 Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F S V IP + P V + +K ++P+QE++ N RS Sbjct: 246 TFHSLEDRLTKQLFKEASTADVPKGLPFIPEDLQPKV-ALVNRKPILPSQEELEANNRSH 304 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 305 SAKLRVAKK 313 >gi|303259429|ref|ZP_07345406.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae SP-BS293] gi|303261184|ref|ZP_07347133.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae SP14-BS292] gi|303263511|ref|ZP_07349434.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae BS397] gi|303265804|ref|ZP_07351702.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae BS457] gi|303267765|ref|ZP_07353567.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae BS458] gi|302638021|gb|EFL68507.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae SP14-BS292] gi|302639363|gb|EFL69821.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae SP-BS293] gi|302642461|gb|EFL72806.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae BS458] gi|302644712|gb|EFL74961.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae BS457] gi|302647284|gb|EFL77508.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae BS397] Length = 316 Score = 173 bits (439), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 110/309 (35%), Positives = 176/309 (56%), Gaps = 14/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 HV VLL + I +L+ P + +DAT G G+S S ++ A D+D A+ Q+ Sbjct: 7 HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66 Query: 77 TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y E+ + + F LQ + + GV DG+ +DLGVSS Q+D +RGFS++K Sbjct: 67 RLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ + ++A +VVN + DL RI GE+K + +IA I + R+ P +TT + Sbjct: 127 PLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQVREVKPIETTTE 186 Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ +I K+ +K + HPA + FQA+RI VN+E+ + ++ A + L G + V+ Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMEMLALDGRISVI 245 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F S +V IP + + + +++K ++P+ E++ N RS Sbjct: 246 TFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDL-KSKMELVSRKPILPSAEELEANNRSH 304 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 305 SAKLRVARK 313 >gi|254415023|ref|ZP_05028786.1| S-adenosyl-methyltransferase MraW [Microcoleus chthonoplastes PCC 7420] gi|196178170|gb|EDX73171.1| S-adenosyl-methyltransferase MraW [Microcoleus chthonoplastes PCC 7420] Length = 291 Score = 173 bits (439), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 116/301 (38%), Positives = 159/301 (52%), Gaps = 26/301 (8%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H VL +++IA L PG LDAT G GG+S +V D A + R Sbjct: 12 HRSVLSQELIAGLAIRPGGHYLDATVGGGGHSELILSAAPDVRVTAIDQDAQAIAAAQTR 71 Query: 80 --DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 Y ++ ++ F Q P+ DG++ DLGVSS Q+D DRGFSF+ PLDMRM Sbjct: 72 LASYGDRIQFWRGNFVDYQP--PESLFDGIIADLGVSSAQLDIPDRGFSFRHQAPLDMRM 129 Query: 138 SC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 ++A+ ++N + L + GEE+ + RIA AIV+RR PF+TT L+ I Sbjct: 130 DQRQSLTAAQIINHWDETQLANTIYEYGEERLSRRIARAIVERR---PFETTTQLAEAIA 186 Query: 197 KTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 ++V + RIHPATR+FQALRI VN E+ L + L A + LK GG + ++SFHSLED Sbjct: 187 RSVPKKYRYGRIHPATRTFQALRIAVNQELSSLEKFLNCAPRWLKPGGRIGIISFHSLED 246 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 RLVK R ++ V +TKK + P + N R+RSAKLR Sbjct: 247 RLVKHHL--RDSPILRV---------------LTKKPITPQPTERDENPRARSAKLRLAE 289 Query: 316 R 316 R Sbjct: 290 R 290 >gi|55823597|ref|YP_142038.1| S-adenosyl-methyltransferase MraW [Streptococcus thermophilus CNRZ1066] gi|55739582|gb|AAV63223.1| S-adenosylmethionine-dependent methyltransferase, putative [Streptococcus thermophilus CNRZ1066] Length = 354 Score = 173 bits (439), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 114/323 (35%), Positives = 176/323 (54%), Gaps = 19/323 (5%) Query: 6 CKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVI 62 K M++ HH V VLL + + +L+ P + +DAT G G+S S ++ Sbjct: 36 IKIMTNEFHH-----VTVLLHETVDMLDIKPDGIYVDATLGGAGHSSYLLSQLSEKGHLY 90 Query: 63 ALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQ 117 D+D A+ Q ++DY K + + F L+ + GV DG+++DLGVSS Q Sbjct: 91 CFDQDQKAIDNAQVRLKDYIDKGMVTFIKDNFRNLKSNLEALGVSEIDGILYDLGVSSPQ 150 Query: 118 IDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 +D +RGFS+++ LDMRM+ + ++A DVVN DL RI GE+K + +IA I Sbjct: 151 LDERERGFSYKQDAKLDMRMNEEASLTAYDVVNTYPYNDLVRIFFKYGEDKFSKQIARKI 210 Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRS 234 + RQ P +TT +L+ +I K+ +K + HPA + FQA+RI VN+E+ + ++ Sbjct: 211 EQARQVKPIETTTELAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQE 269 Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVV 293 A L G + V++FHSLEDRL K+ F S V IP + P V + +K + Sbjct: 270 ALDLLAVDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPEDLQPKV-ALVNRKPI 328 Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316 +P+QE++ N RS SAKLR + Sbjct: 329 LPSQEELEANNRSHSAKLRVAKK 351 >gi|296110609|ref|YP_003620990.1| cell division protein MraW [Leuconostoc kimchii IMSNU 11154] gi|295832140|gb|ADG40021.1| cell division protein MraW [Leuconostoc kimchii IMSNU 11154] Length = 313 Score = 173 bits (439), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 107/305 (35%), Positives = 165/305 (54%), Gaps = 10/305 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76 +HV VLL + +ALLN P + +DAT G GG++ K + + D+D A+ +E Sbjct: 5 EHVTVLLHEAVALLNIKPDGLYVDATLGGGGHTGEILKQLTSGTLYSFDQDDLAIRYNRE 64 Query: 77 TMRDYKE--QFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 D + + L F L + ++GV DG+++DLGVSS+Q D G RGFS+ Sbjct: 65 QFADDIQAGKLVLIHQNFRTLTSALAERGVTQVDGIIYDLGVSSVQFDDGQRGFSYNYDA 124 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM ++A +VN + +L RIL GE++ +IA I R++ P TT + Sbjct: 125 DLDMRMDQRQNLTAKIIVNDWSFHELLRILSRYGEDRFPKQIARKIESHREAQPINTTFE 184 Query: 191 LSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I++ + ++ HPA R+FQALRI VN+E+ L L A L G + ++ Sbjct: 185 LVDIIKEAIPAPARRKGGHPAKRTFQALRIAVNDELGALEDSLTQAIALLAPSGRISAIT 244 Query: 250 FHSLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 F SLEDRLVK+ F + S + V + A + +T+K ++P++ ++ N RS S Sbjct: 245 FQSLEDRLVKQMFREKTSTPELPVGLPVLPGQFEADYTLLTRKPILPSEHEMTINHRSES 304 Query: 309 AKLRA 313 AKLR Sbjct: 305 AKLRG 309 >gi|256841653|ref|ZP_05547159.1| MraW methylase [Parabacteroides sp. D13] gi|301310871|ref|ZP_07216800.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 20_3] gi|256736547|gb|EEU49875.1| MraW methylase [Parabacteroides sp. D13] gi|300830934|gb|EFK61575.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 20_3] Length = 305 Score = 173 bits (439), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 110/301 (36%), Positives = 167/301 (55%), Gaps = 17/301 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HVPV+L + + L+ P + +D TFG GG+SR K G + D+D A E Sbjct: 9 HVPVMLRESLEGLDIRPDGIYVDVTFGGGGHSREILKRLGSGGELYGFDQDADA-----E 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +F+ ++ F L +++ G VDG++ DLGVSS D DRGFSF+ G Sbjct: 64 HNIPADPRFTFVRSNFRYLYNFMRYYGESGEVDGLLADLGVSSHHFDDKDRGFSFRFDGT 123 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ +G +A+D+VN + L + + GE K + ++A +VK R++ +T D Sbjct: 124 LDMRMNTRAGQTAADIVNNYTAEALADVFYLYGELKVSRKLASVLVKARETKKIETIGDF 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + K+ + FQALRI VN+E+ L + LRS + L+ GG L+V+++H Sbjct: 184 LEVIKP--FTGKDKEKKFLAQVFQALRIEVNDEMRALKEMLRSTLRVLRPGGRLVVITYH 241 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDRLVK F + + + + + P F+ + KV+VPT E+V N RSRSAKL Sbjct: 242 SLEDRLVKNFLKTGNFEGKCEQDFFGNVRSP--FRLVNNKVIVPTDEEVERNPRSRSAKL 299 Query: 312 R 312 R Sbjct: 300 R 300 >gi|224282633|ref|ZP_03645955.1| S-adenosyl-methyltransferase [Bifidobacterium bifidum NCIMB 41171] gi|313139792|ref|ZP_07801985.1| S-adenosyl-methyltransferase [Bifidobacterium bifidum NCIMB 41171] gi|313132302|gb|EFR49919.1| S-adenosyl-methyltransferase [Bifidobacterium bifidum NCIMB 41171] Length = 370 Score = 173 bits (439), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 113/306 (36%), Positives = 168/306 (54%), Gaps = 15/306 (4%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74 H PVLLE+ ++L+ PA PG + +D T G G++ +F K + V+ +DRD A++ Sbjct: 8 HQPVLLEQCVSLVAPALQDPGSIAVDCTLGLAGHTIAFLKAAPQARVLGIDRDAEALAMA 67 Query: 75 QETM--RDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQK 129 E + ++F A F + D+G+D V DLG+SS+QID DRGFS+ Sbjct: 68 TERIAGEGLSDRFIPVHAAFDAFGQVLDDQGIDRVNAVFMDLGLSSLQIDETDRGFSYAH 127 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM S ++A V+ + ++L RI GEE+ + +IA IV+RR P T+ Sbjct: 128 DAPLDMRMDVSQPLTAQRVLAEYPERELVRIFRAYGEERFSRQIAREIVRRRAQEPLTTS 187 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ L+ + V + +PA R FQALRI VN E+++LA L L G L+V Sbjct: 188 AQLNRLVDEVVPQAHRPAGNPAKRVFQALRIEVNGELDKLAGTLPQIACRLAPNGRLVVE 247 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 S+HSLED+ VK F + +V A M +P +A P F +T+ V +++A N RS Sbjct: 248 SYHSLEDKTVKSFM-NEGLRVDAPADMPVVPDDAQP-FFAPLTRGAVQAGPDEIAANPRS 305 Query: 307 RSAKLR 312 S +LR Sbjct: 306 ASVRLR 311 >gi|222153542|ref|YP_002562719.1| S-adenosyl-methyltransferase MraW [Streptococcus uberis 0140J] gi|262825652|sp|B9DV78|RSMH_STRU0 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|222114355|emb|CAR43080.1| S-adenosyl-methyltransferase MraW [Streptococcus uberis 0140J] Length = 316 Score = 173 bits (439), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 110/309 (35%), Positives = 175/309 (56%), Gaps = 14/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQE 76 H+ VLL + + +L+ P + +DAT G G+S K+ N + D+D A+ Q Sbjct: 7 HITVLLHETVDMLDIKPDGIYVDATLGGAGHSSYLLSKLNDNGHLYCFDQDQKAIDNAQV 66 Query: 77 TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++ Y ++ + +A F L+ + GV DG+++DLGVSS Q+D +RGFS+++ Sbjct: 67 FLKSYVDRGMVTFIKANFRHLKSELNALGVTEIDGILYDLGVSSPQLDERERGFSYKQDA 126 Query: 132 PLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S + ++A VVN +DL RI GE+K + +IA I + R P +TT + Sbjct: 127 PLDMRMDSDAALTAYHVVNDYPFQDLVRIFFKYGEDKFSKQIARKIEQARAIKPIETTAE 186 Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ +I K+ +K + HPA + FQA+RI VN+E+ + ++ A L G + V+ Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQEAMTMLALNGRISVI 245 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F S V IP + P F+ +T+K ++P+QE++ N R+ Sbjct: 246 TFHSLEDRLTKQLFKEASTVDVPKGIPFIPEDMQPK-FELVTRKPILPSQEELLANNRAH 304 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 305 SAKLRVARK 313 >gi|257092216|ref|YP_003165857.1| S-adenosyl-methyltransferase MraW [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044740|gb|ACV33928.1| S-adenosyl-methyltransferase MraW [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 316 Score = 173 bits (438), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 113/305 (37%), Positives = 171/305 (56%), Gaps = 17/305 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQE 76 H VLL++ + L P +D TFG GG+SR+ + G ++A DRDP AV+ Sbjct: 7 HQTVLLQEAVEALAIKPAGTYVDGTFGRGGHSRAILQRLGTGGRLLAFDRDPQAVAMASG 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVP------DKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + + F L D + ++G+DGV+ D+GVSS Q+D RGFSF+ Sbjct: 67 ---ETDARLLVMHERFGDLADALRRAGCAVEQGIDGVLLDIGVSSPQLDEHARGFSFRGD 123 Query: 131 GPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM + G +A+ + +A+ +++T ++ GEE+ A +IA IV R TT Sbjct: 124 APLDMRMDTTQGETAAQWLGRASEQEITEVIRNYGEERFAFQIAKKIVAARGERSVATTG 183 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 +L++L+++TV + + ATR+FQALRI +N E+E+LA L A LKAGG L+V+S Sbjct: 184 ELAALVRQTVRTREPGQ-DAATRTFQALRIHINQELEQLALVLPQAMTVLKAGGRLVVIS 242 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 FHSLEDR+VK+F + R + ++ P + I K V E +A N R+R Sbjct: 243 FHSLEDRIVKRFLRDEAAPDRLPRKLPLRAADLPPPRLRLIGKPVRASAAE-IAANPRAR 301 Query: 308 SAKLR 312 SA +R Sbjct: 302 SAIMR 306 >gi|94994874|ref|YP_602972.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes MGAS10750] gi|94548382|gb|ABF38428.1| S-adenosyl-methyltransferase mraW [Streptococcus pyogenes MGAS10750] Length = 337 Score = 173 bits (438), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 110/323 (34%), Positives = 177/323 (54%), Gaps = 17/323 (5%) Query: 5 SCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NV 61 + K M+ HH V VLL + + +L+ P + +DAT G G+S S ++ Sbjct: 18 TIKVMTKEFHH-----VTVLLHETVDMLDIKPNGIYVDATLGGSGHSAYLLSKLSEQGHL 72 Query: 62 IALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSM 116 D+D A+ Q T++ Y K Q + + F L+ + GVD G+++DLGVSS Sbjct: 73 YCFDQDQKAIDNAQVTLKSYIDKGQVTFIKDNFRHLKARLTALGVDEIDGILYDLGVSSP 132 Query: 117 QIDCGDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175 Q+D +RGFS+++ PLDMRM S ++A +VVN DL +I GE+K + +IA Sbjct: 133 QLDERERGFSYKQDAPLDMRMDRQSLLTAYEVVNTYPFNDLVKIFFKYGEDKFSKQIARK 192 Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRS 234 I + R P +TT +L+ LI+ + + HPA + FQA+RI VN+E+ + ++ Sbjct: 193 IEQARAIKPIETTTELAELIKAAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQD 252 Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVV 293 A + L G + V++FHSLEDRL K+ F S V +IP + P F+ +++K + Sbjct: 253 AMELLALDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPLIPEDMKP-TFELVSRKPI 311 Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316 +P+ ++ N+R+ SAKLR + Sbjct: 312 LPSHSELTANKRAHSAKLRVAKK 334 >gi|293363236|ref|ZP_06610120.1| S-adenosyl-methyltransferase MraW [Mycoplasma alligatoris A21JP2] gi|292553095|gb|EFF41844.1| S-adenosyl-methyltransferase MraW [Mycoplasma alligatoris A21JP2] Length = 302 Score = 173 bits (438), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 117/301 (38%), Positives = 164/301 (54%), Gaps = 18/301 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQE 76 H VLLE+ I LN P + +D T G GG+S K+ N +IA D+D +A+ Q Sbjct: 5 HYSVLLEETIKSLNLQPDGIYVDLTLGMGGHSAKILEKLNKNGMLIAFDKDDYALEISQR 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + ++F L ++ +SQL+ + + VDG++ DLG+SS QID +RGFS+ K L Sbjct: 65 RLSSISDKFILIKSDYSQLKSQLANHNIYKVDGIIADLGISSPQIDNANRGFSYNKDAKL 124 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S + A VVN +V+ L I + K AS++A AI K R P +T L Sbjct: 125 DMRMDTSQELDAEIVVNTYSVEHLRDIFLKYADVKHASQVAKAIEKNR---PIVSTMQLV 181 Query: 193 SLIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I K+ Y + R +PA FQALRI VNNE+ L L A LK L +++FH Sbjct: 182 EVI-KSAYPAALLRAKNPAKAVFQALRIEVNNELYSLKTMLDDAVSLLKTNASLSIITFH 240 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 S+EDRLVK FAS + IP+ A ++ K V P+ ++ N+RSRSAKL Sbjct: 241 SIEDRLVKHKFASLTAS------KIPAKMPIADKKTFLSKQVKPSSNEIQENKRSRSAKL 294 Query: 312 R 312 R Sbjct: 295 R 295 >gi|293381714|ref|ZP_06627695.1| S-adenosyl-methyltransferase MraW [Lactobacillus crispatus 214-1] gi|290921761|gb|EFD98782.1| S-adenosyl-methyltransferase MraW [Lactobacillus crispatus 214-1] Length = 315 Score = 173 bits (438), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 116/313 (37%), Positives = 171/313 (54%), Gaps = 19/313 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQE 76 H VLL + I L P G + +DATFG GG Y S G+ ++ D+D +A+ + Sbjct: 5 HTSVLLHETIDNLKPKNGGLYVDATFGGGGDAKYLLSKIDTGT-LVGFDQDEYAIKSAKL 63 Query: 77 TMR-----DYKEQFSLFQATFSQLQ-DYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSF 127 D + + L FS L+ D V G+DG+ +DLGVSS Q D DRGFS+ Sbjct: 64 NFANLLQLDSEPRLELVHDNFSNLEKDLVKLGYSDGIDGIYYDLGVSSPQFDQADRGFSY 123 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + LDMRM S + A +VN + K+L IL G+EK + +IAH IV+RR+ P Sbjct: 124 RYDARLDMRMDQSQDLDAYQLVNTLSQKELADILYQYGDEKFSRQIAHRIVERRREKPIA 183 Query: 187 TTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT +L +I+ + +++ HPA +SFQALR+ VN+E++ L L A K L+ GG + Sbjct: 184 TTFELVDVIKDAIPAYARRTGGHPAKKSFQALRVAVNHELDVLQASLEEAIKILRPGGRI 243 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFN 303 V++F S ED++VK+ F S +V R M IP P + + + K +V + ++ N Sbjct: 244 SVITFQSHEDKIVKRIFKKYS-EVEVPRGMPFIPDGMKPTL-RLVNHKPIVASTSELENN 301 Query: 304 RRSRSAKLRAGMR 316 RS SAKLR + Sbjct: 302 NRSHSAKLRVAEK 314 >gi|189461555|ref|ZP_03010340.1| hypothetical protein BACCOP_02214 [Bacteroides coprocola DSM 17136] gi|189431761|gb|EDV00746.1| hypothetical protein BACCOP_02214 [Bacteroides coprocola DSM 17136] Length = 306 Score = 173 bits (438), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 109/301 (36%), Positives = 169/301 (56%), Gaps = 18/301 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQE 76 H+PVLL + I +N P + D TFG GG+S+ + S++ + D+D A ++ Sbjct: 11 HIPVLLNESIDGMNLHPAGIYADMTFGGGGHSKEILRRMDKNSHLYSFDQDEDA----EK 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + D +F+ ++ F L +++ GV D ++ DLGVSS D +RGFSF+ G L Sbjct: 67 NIVD-DSRFTFVRSNFRYLHNFLRYYGVEEADAILADLGVSSHHFDDSERGFSFRFDGKL 125 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +G++A+D+VN + L + + GE K + ++A +VK R T D Sbjct: 126 DMRMNKRAGMTAADIVNNYEEERLANVFYLYGELKNSRKLASVLVKARAQKQIVTIGDFL 185 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ F K + FQALRI VN E+E L + L +A +ALK GG L+++++HS Sbjct: 186 EIIKPL--FGKEREKKELAKVFQALRIEVNQEMEALKEMLYAATEALKPGGRLVIITYHS 243 Query: 253 LEDRLVKKFFASRSGKVMA-VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK ++G V V N F+++ KV+VP+ E++A N RSRSAKL Sbjct: 244 LEDRIVKNLI--KTGNVEGKVEQDFFGNVQTP-FRAVNNKVIVPSDEEIARNPRSRSAKL 300 Query: 312 R 312 R Sbjct: 301 R 301 >gi|227535245|ref|ZP_03965294.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187129|gb|EEI67196.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 313 Score = 173 bits (438), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 112/303 (36%), Positives = 161/303 (53%), Gaps = 12/303 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H VLL++ A L P +DAT G GG++R + +IA D+D A++ Sbjct: 6 HETVLLKEATAALAVKPAGTYVDATLGRGGHTRQILNQLTTGRLIAFDQDEAAIATVTAD 65 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 +Q +L F L D + G VDG+++DLGVSS Q D RGFS++ PLD Sbjct: 66 FGTLPKQLTLVHRNFRDLTDALTTLGITEVDGILYDLGVSSPQFDDSKRGFSYRFDAPLD 125 Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM + A +VN+ DL RI GEE + +IA I + R P TT L Sbjct: 126 MRMDQRQTLDAKTIVNEWPYADLVRIFSRYGEEHFSKQIARRIEQARTVQPITTTFQLVE 185 Query: 194 LIQKTVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 LI+ + +K R HPA + FQA+RI VN+E+ L L A K + GG + V++F Sbjct: 186 LIKAGIP-AKARRTGGHPAKKVFQAIRIAVNDELSALESSLEQALKLINVGGRISVITFQ 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDRLVK F S R + IP++A P ++ + +K ++P++E++ N R+ SA Sbjct: 245 SLEDRLVKTMFKEVSSVQDVPRGLPVIPASAQPN-YRLVNRKPILPSEEELTVNHRAHSA 303 Query: 310 KLR 312 KLR Sbjct: 304 KLR 306 >gi|87300864|ref|ZP_01083706.1| methyltransferase [Synechococcus sp. WH 5701] gi|87284735|gb|EAQ76687.1| methyltransferase [Synechococcus sp. WH 5701] Length = 299 Score = 173 bits (438), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 114/307 (37%), Positives = 170/307 (55%), Gaps = 32/307 (10%) Query: 19 DHVPVLLEKVIALLNPAPGK-VILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQ 75 DH+PVL V+A PG+ +LD T G GG+S G +I LD+DP A++ Sbjct: 6 DHLPVLAAAVVAGFTDLPGEGTLLDVTVGGGGHSALLLAAHPGLRLIGLDQDPAALAAAA 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 E + + ++ +L + F+ +Y P + + GV+ DLGVSS Q+D +RGFSF+ GPLDM Sbjct: 66 ERLEPFADRVTLVPSNFA---NYAPSEPLVGVLADLGVSSPQLDRPERGFSFRLDGPLDM 122 Query: 136 RM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM S G +A++++++ KDL ++ GEE+ + RIA IV+ R P+ + ++ Sbjct: 123 RMNSAEGETAAELMDRVEEKDLADLIYAYGEERLSRRIARRIVEAR---PWHGSSRGTAA 179 Query: 195 IQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 + V +++ RIH ATR+FQALRI VN+E+ L + L +A L GGL V+S Sbjct: 180 LAYLVAGCYPPKARHGRIHAATRTFQALRIAVNDELGALERLLHNAPDWLMPGGLFGVIS 239 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDR VK F + + +T+K VV +++ N RSRSA Sbjct: 240 FHSLEDRRVKAAFLADD-----------------RLERLTRKPVVADEQEAERNPRSRSA 282 Query: 310 KLRAGMR 316 K R R Sbjct: 283 KFRLARR 289 >gi|329895271|ref|ZP_08270913.1| S-adenosyl-methyltransferase MraW [gamma proteobacterium IMCC3088] gi|328922393|gb|EGG29736.1| S-adenosyl-methyltransferase MraW [gamma proteobacterium IMCC3088] Length = 305 Score = 173 bits (438), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 118/305 (38%), Positives = 170/305 (55%), Gaps = 11/305 (3%) Query: 20 HVPVLLEKVI-ALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 H VLLE+ + L+ P G+ + D TFG GG++R+ + ++ V+ +D+DP A+ Q Sbjct: 2 HESVLLEESLQGLVGPLSGRYV-DGTFGRGGHTRALLALLNDDAAVLVMDKDPQAIEVAQ 60 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + S++ +F+ L D + GVDGV+ DLGVSS Q+D +RGFSFQ+ GP Sbjct: 61 -ALAAEDGRVSVYHGSFADLPDALRQLGWAGVDGVLLDLGVSSPQLDQDERGFSFQRQGP 119 Query: 133 LDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + SG + ++ + + DL +L GEE+ A RIA AIVK R +P TT L Sbjct: 120 LDMRMDNSSGQTVAEYLQGVSETDLISVLRDYGEERFARRIAAAIVKARADSPITTTLQL 179 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + L+ K + HPATR+FQALRI +N E+E+L L L G L V+SFH Sbjct: 180 AELV-KAAHPRWEKHKHPATRTFQALRIAINRELEDLDVLLDVVVDCLSPSGRLAVISFH 238 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR VK+F S R + ++ K + P++ +V N R+RSA L Sbjct: 239 SLEDRKVKQFMRKASQGPKVPRGVPVQGDTMRGPLALVGKAIKPSEREVQANVRARSAVL 298 Query: 312 RAGMR 316 R R Sbjct: 299 RIAER 303 >gi|284048645|ref|YP_003398984.1| S-adenosyl-methyltransferase MraW [Acidaminococcus fermentans DSM 20731] gi|283952866|gb|ADB47669.1| S-adenosyl-methyltransferase MraW [Acidaminococcus fermentans DSM 20731] Length = 309 Score = 173 bits (438), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 106/305 (34%), Positives = 169/305 (55%), Gaps = 9/305 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VLLE+ + + P + +D T G GG+S ++ +I +D+D A++ E Sbjct: 5 HKSVLLEESVQWVVTDPKGIYVDCTLGGGGHSHRITELLDPEGLLIGIDQDEDAIAAATE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++D + Q + F L + G VDG++FDLGVSS Q+D +RGFS+ GPL Sbjct: 65 RLKDARCQVKIVHNNFRNLDQILDQLGIPQVDGILFDLGVSSYQLDTPERGFSYMHDGPL 124 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + ++A VVN+ DL ++ GEE+ A RIA IV R+ P +TT +L Sbjct: 125 DMRMDQEASLTAEQVVNRYKEDDLAGLIYKYGEERWAKRIAQFIVAARKEHPIRTTGELV 184 Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + ++ + HPA R+FQA+RI VN+E++ L + +A LK+GG + V++FH Sbjct: 185 HIIKAAIPKGARQDGPHPAKRTFQAIRIEVNDELKILDATMEAAVHHLKSGGHIGVITFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR++K+ F R + +P + K P + ++A N R+RSA+L Sbjct: 245 SLEDRIIKQAF-KRLQRGCICPPELPVCVCGRKPELKKLKEFTPGEAELAENPRARSARL 303 Query: 312 RAGMR 316 R ++ Sbjct: 304 RGAVK 308 >gi|297181413|gb|ADI17602.1| predicted s-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [uncultured delta proteobacterium HF0130_19C20] Length = 314 Score = 173 bits (438), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 116/307 (37%), Positives = 174/307 (56%), Gaps = 20/307 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77 H+ VL ++V+ P+P + ILD T G GG+S + +++ +DRD AV + Sbjct: 7 HISVLQKEVVDFAPPSP-QTILDCTLGGGGHSYKLLEKYPKASLYGIDRDSIAVKAADQR 65 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++++++Q L A+FS+L + G D ++ D+GVSS QI C +RGFSF GPLD Sbjct: 66 LQNFRKQTCLIHASFSELPAMIDKWGNPIFDYIIADIGVSSEQISCPERGFSFLNEGPLD 125 Query: 135 MRMSCS--GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 MRM ++A ++VN AN +L IL GEE+ A RI I+ R+ F+TT +L+ Sbjct: 126 MRMDPERQHLTAENIVNNANEHELVNILRNFGEERFARRIVSTILVERRKKKFRTTLELA 185 Query: 193 SLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 L++ + R +PAT++FQALRI VNNE+ EL L + K LK G + V+SFH Sbjct: 186 ELVKNVIPNKMRKRGFNPATKTFQALRIAVNNELLELTTLLENVPKFLKNSGRMAVISFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI------TKKVVVPTQEDVAFNRR 305 SLEDR+VK+ F + P++ V I T++ V ++E++A N R Sbjct: 246 SLEDRIVKQKFRKWENPCVC-----PTDLPYCVCGGIPLGKVLTRRQVKASKEEIAKNPR 300 Query: 306 SRSAKLR 312 SRSA LR Sbjct: 301 SRSAHLR 307 >gi|206896128|ref|YP_002247018.1| S-adenosyl-methyltransferase MraW [Coprothermobacter proteolyticus DSM 5265] gi|263446122|sp|B5Y8C1|RSMH_COPPD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|206738745|gb|ACI17823.1| S-adenosyl-methyltransferase MraW [Coprothermobacter proteolyticus DSM 5265] Length = 299 Score = 173 bits (438), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 111/300 (37%), Positives = 164/300 (54%), Gaps = 23/300 (7%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76 +H PV+ ++V LL + +DAT G+GG+ ++ I +D DP AV E Sbjct: 6 EHKPVMAKQVAELLVSNEEGIYVDATAGSGGHLGLLANTYPEASFIGIDIDPEAVKFLTE 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + ++ L D + VDG++ DLG+S Q RGFS + GPL Sbjct: 66 KFAGVS-NVRIIRGNYADLPDILHSMEIGQVDGILLDLGISMHQALSAQRGFSIKNPGPL 124 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMR S ++A ++VN + + L I+ GEE++A +IA A+V+ R+ P +TT +L+ Sbjct: 125 DMRFSIDQKVTAYELVNSLSEEQLADIIYRYGEERRARKIAKAVVEARKVKPLETTDELA 184 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 L+ +TV + RIHPATR FQALRI N E++ L L + LK GG L V+S+HS Sbjct: 185 DLVARTVGY--RGRIHPATRVFQALRIATNRELDNLQVALPRIFQVLKEGGRLAVISYHS 242 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK+FF + + +R +TKKVV P+ E++ N SRSAKLR Sbjct: 243 LEDRIVKQFFKTWEEEGKGLR--------------LTKKVVKPSLEEINENPSSRSAKLR 288 >gi|213423591|ref|ZP_03356571.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 237 Score = 172 bits (437), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 100/236 (42%), Positives = 148/236 (62%), Gaps = 13/236 (5%) Query: 92 FSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASD 146 FS L DYV ++ +DG++ DLGVSS Q+D +RGFSF + GPLDMRM + G SA++ Sbjct: 3 FSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFMRDGPLDMRMDPTRGQSAAE 62 Query: 147 VVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNR 206 + A D+ +L GEE+ A RIAHAIV+R + P T++L+ ++ K+ Sbjct: 63 WLQTAEEADIAWVLKTFGEERFAKRIAHAIVERNREQPMTRTKELAEVVAAATPV-KDKF 121 Query: 207 IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF--AS 264 HPATR+FQA+RI+VN+E+EE+ Q L+S+ L +GG L ++SFHSLEDR+VK+F S Sbjct: 122 KHPATRTFQAVRIWVNSELEEIEQALKSSLSVLASGGRLSIISFHSLEDRIVKRFMREQS 181 Query: 265 RSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 R +V A M + +++ K ++P +++VA N R+RS+ LR RT Sbjct: 182 RGPQVPAGLPMTEAQLKKLGGRELRALGK--LMPGEKEVAENPRARSSVLRIAERT 235 >gi|312143945|ref|YP_003995391.1| S-adenosyl-methyltransferase MraW [Halanaerobium sp. 'sapolanicus'] gi|311904596|gb|ADQ15037.1| S-adenosyl-methyltransferase MraW [Halanaerobium sp. 'sapolanicus'] Length = 310 Score = 172 bits (437), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 118/313 (37%), Positives = 173/313 (55%), Gaps = 22/313 (7%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 +H VLL + I LN V LD T G GG+S K S +IA+DRD A+ + Sbjct: 4 EHKAVLLNEAIKYLNIKEDGVYLDGTLGRGGHSFEILKKLSEHGKLIAIDRDIEAIKAVR 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E + L A F D V +K VDG++FDLGVSS Q+D +RGFS+QK G Sbjct: 64 EKQPE-NSSLILEHANFLDF-DKVLNKHSISKVDGMLFDLGVSSPQLDNAERGFSYQKDG 121 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ + ++A+D+VN + K+L +I+ GEE A RIA IV+ R+ + T + Sbjct: 122 PLDMRMNQNQALTAADIVNNYSQKELIKIISDYGEENWAVRIAEFIVEARKKEEIERTSE 181 Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I+ V ++ HPA R+FQALRI N+E+ +L + ++ + L GG ++++S Sbjct: 182 LVEIIKAAVPKGARRGGGHPARRTFQALRIATNDELNQLQKLIKKSVSFLNKGGRIVIIS 241 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV------FQSITKKVVVPTQEDVAFN 303 FHSLEDR+VK F + +A P + V + IT+ + + +V N Sbjct: 242 FHSLEDRIVKHSF-----RELAKDCTCPPDFPICVCDKVSHVKVITRSPIEAKKNEVDSN 296 Query: 304 RRSRSAKLRAGMR 316 R+RSAKLRA + Sbjct: 297 PRARSAKLRAAEK 309 >gi|300780824|ref|ZP_07090678.1| S-adenosyl-methyltransferase MraW [Corynebacterium genitalium ATCC 33030] gi|300532531|gb|EFK53592.1| S-adenosyl-methyltransferase MraW [Corynebacterium genitalium ATCC 33030] Length = 333 Score = 172 bits (437), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 110/316 (34%), Positives = 174/316 (55%), Gaps = 24/316 (7%) Query: 20 HVPVLLEKVIALLNPA-----PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVS 72 H+PV+ +++ LL PA P VI+D T GAGG++ F ++VI +DRD A++ Sbjct: 13 HIPVMRDRMGELLRPAVERFGPHAVIVDGTLGAGGHTEYFLDTFPEASVIGIDRDGAALA 72 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD-----------KGVDGVVFDLGVSSMQIDCG 121 E + + ++F+ + F L + + D G+ G FDLGVSSMQ+D Sbjct: 73 QAGERLARFGDRFAPVRGRFDCLAESLRDGTGPVFETVRAHGLAGAFFDLGVSSMQLDQE 132 Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGF+++ PLDMRM S GI+A+DV+N + DL +L G+E+ A +IA A++ R Sbjct: 133 ERGFAYRVDAPLDMRMDPSAGITAADVLNTYSHGDLAHVLKAYGDERFAGKIASAVLDER 192 Query: 181 QSAPFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 + APF T+ L L+ + + ++ HPA R+FQALR+ VN E++ L L +AL Sbjct: 193 EKAPFDTSARLVELLYRVIPAATRRTGGHPAKRTFQALRVEVNRELDALTNVLPMVAEAL 252 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297 GG + +S+ S ED+LVK+ F + S + +P A A F+ +T + Sbjct: 253 GPGGRAVFMSYQSHEDKLVKRAFTEWTTSKTPAGLPTELPGMA--AEFRMVTHGAEKASV 310 Query: 298 EDVAFNRRSRSAKLRA 313 +V NRR+ ++RA Sbjct: 311 AEVEVNRRAAPVRVRA 326 >gi|167758763|ref|ZP_02430890.1| hypothetical protein CLOSCI_01105 [Clostridium scindens ATCC 35704] gi|167663503|gb|EDS07633.1| hypothetical protein CLOSCI_01105 [Clostridium scindens ATCC 35704] Length = 311 Score = 172 bits (437), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 107/310 (34%), Positives = 175/310 (56%), Gaps = 23/310 (7%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGS--NVIALDRDPFAVSCGQ 75 +H VLL++ I LN P + +D T G GG++ C ++G+ ++I +D+D A+ Sbjct: 4 EHKSVLLDETINGLNIKPDGIYVDGTLGGGGHAYEVCTRLGTKGSIIGIDQDAAAIEAAD 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + D+ E+ ++ ++ + ++ + + G VDG++ DLGVSS Q+D +RGFS+++ P Sbjct: 64 ARLNDFGEKVTIVRSNYCDMKSRLHELGIDKVDGIILDLGVSSYQLDTAERGFSYREDAP 123 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM ++A D+VN + DL R++ GE+K A IA IV +R P +TT L Sbjct: 124 LDMRMDTRQKMTARDIVNDYSEMDLYRVIRDYGEDKFAKNIAKHIVAQRGKGPIETTGQL 183 Query: 192 SSLIQKTV---YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 + +I+ + Y K+ HPA R+FQA+RI +N E+E L L + L GG L ++ Sbjct: 184 TEIIRGAIPMKYQKKSG--HPAKRTFQAIRIELNRELEVLRDTLDDMIELLNPGGRLCII 241 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS------ITKKVVVPTQEDVAF 302 +FHSLEDR+VK F P + V + +T+K ++P++ ++ Sbjct: 242 TFHSLEDRIVKSAFKKNENPCTC-----PPDFPVCVCGNVSKGSIVTRKPILPSKYEMEA 296 Query: 303 NRRSRSAKLR 312 N RS+SAKLR Sbjct: 297 NSRSKSAKLR 306 >gi|213965216|ref|ZP_03393413.1| S-adenosyl-methyltransferase MraW [Corynebacterium amycolatum SK46] gi|213952068|gb|EEB63453.1| S-adenosyl-methyltransferase MraW [Corynebacterium amycolatum SK46] Length = 346 Score = 172 bits (437), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 112/322 (34%), Positives = 164/322 (50%), Gaps = 29/322 (9%) Query: 20 HVPVLLEKVIALLNPA-----PGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVS 72 HVPVLL +V LL P V++D T GAGG++ + V+ LDRD A+ Sbjct: 17 HVPVLLHRVTDLLRPGIEALGDDAVVVDGTLGAGGHTEYLLEQFPKLCVVGLDRDDNALR 76 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYV--------------------PDKGVDGVVFDLG 112 +E + + +F F+ F L + + KG+ G +FDLG Sbjct: 77 GAEERLARFGNRFVAFRVRFDSLAEVLSGEIPAAAGGSGAENILARAAGKGIAGALFDLG 136 Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASR 171 VSSMQ+D +RGF+++ PLDMRM S GI+A+DV+N + D+ RIL G+E+ A + Sbjct: 137 VSSMQLDQVNRGFAYRVDAPLDMRMDASQGITAADVLNTYSHGDIARILSTYGDERFAGK 196 Query: 172 IAHAIVKRRQSAPFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQ 230 IA AI++ R+ PF + L L+ +T+ S+ HPA R+FQALRI VN E+E L Sbjct: 197 IASAILREREKEPFTNSGRLVELLYETIPAASRRKGGHPAKRTFQALRIEVNRELEALEN 256 Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK 290 L AL G + +S+ SLEDR+VKK F R + H F IT+ Sbjct: 257 VLPQVCDALAVDGRAVFMSYQSLEDRIVKKDFVERVKSTTPPGLPMELPGHEPHFALITR 316 Query: 291 KVVVPTQEDVAFNRRSRSAKLR 312 + ++ N R+ ++R Sbjct: 317 GAEKASASEIEDNPRAAPVRVR 338 >gi|313893629|ref|ZP_07827197.1| S-adenosyl-methyltransferase MraW [Veillonella sp. oral taxon 158 str. F0412] gi|313441773|gb|EFR60197.1| S-adenosyl-methyltransferase MraW [Veillonella sp. oral taxon 158 str. F0412] Length = 310 Score = 172 bits (437), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 106/307 (34%), Positives = 168/307 (54%), Gaps = 10/307 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 +H VLL + + + P + +D T G G++ + KM +I LD+D A+S + Sbjct: 4 NHTSVLLRETVDSVVTNPKGIYVDCTLGGAGHAHAVGKMLDPEGMIIGLDQDEDALSVAR 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + D Q FS L++ + + G VDG +FDLGVSS Q+D +RGFS+ GP Sbjct: 64 QRLSDLNCQVLTIPTNFSNLKEALQNAGIYEVDGFIFDLGVSSYQLDTPERGFSYMNDGP 123 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM ++A ++VN+ + + L +I+ GEE+ A RI IV RQ TT +L Sbjct: 124 LDMRMDKDAPLTAEEIVNEYDAEQLLQIIRDYGEERWAKRIVEFIVNARQENRITTTGEL 183 Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I++ + ++ + HPA R+FQA+RI VN E+ L A LK G + V++F Sbjct: 184 VRIIKQAIPAKARQDGPHPAKRTFQAIRIEVNRELAILHDSFVDAVSMLKPKGKIGVITF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+ K+ F S + + + + H AV ++ K + P+ ++ N R+RSA Sbjct: 244 HSLEDRITKQTFKELSTACICPPELPMCACNHKAVVKA-KNKAIEPSAGEIEVNPRARSA 302 Query: 310 KLRAGMR 316 KLR ++ Sbjct: 303 KLRVAIK 309 >gi|83816833|ref|YP_444696.1| S-adenosyl-methyltransferase MraW [Salinibacter ruber DSM 13855] gi|123529490|sp|Q2S535|RSMH_SALRD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|83758227|gb|ABC46340.1| S-adenosyl-methyltransferase MraW [Salinibacter ruber DSM 13855] Length = 336 Score = 172 bits (437), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 115/324 (35%), Positives = 175/324 (54%), Gaps = 22/324 (6%) Query: 20 HVPVLLEKVIA-LLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 H PVL V A L+ A G+ + DAT G GG++R+ + V+ +DRDP A+ + Sbjct: 24 HAPVLSHDVQARLVTDASGRYV-DATLGGGGHARALLDVLDPDGVVLGIDRDPEALETAR 82 Query: 76 ETMRDYKE--QFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + D +E +F TF L+D + + +DG++ DLGVSS QID +RGFSF+ Sbjct: 83 DRLADEREAGRFWAVHGTFGNLRDVLAAEDLIPIDGLLLDLGVSSHQIDVPERGFSFRDE 142 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 GPLDMRM G++A VVN +DL +L GEE +A +IA A+ R P TT+ Sbjct: 143 GPLDMRMDPQRGLTAQQVVNGWGERDLRDVLREYGEESRAGQIARALCDAR---PLDTTR 199 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +++ + + TR FQALRI VN E++EL Q L A + ++ GG + +S Sbjct: 200 ALAEVVEDCA--PPPDTVKTLTRVFQALRIVVNAELDELEQVLEQATEVVRTGGRIAAIS 257 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 +HSLEDR VK++ + + R + + P + + + + +V N R+RSA Sbjct: 258 YHSLEDRRVKRYLRYGNFEGEPRRDLYGTLVAP--WAETPRGPIEAGESEVEANPRARSA 315 Query: 310 KLRAGMRTVERSIEDDSFVHLPRL 333 L R ER +D++ LP L Sbjct: 316 HL----RVAERRDDDEAGAPLPPL 335 >gi|262276873|ref|ZP_06054666.1| S-adenosyl-methyltransferase MraW [alpha proteobacterium HIMB114] gi|262223976|gb|EEY74435.1| S-adenosyl-methyltransferase MraW [alpha proteobacterium HIMB114] Length = 329 Score = 172 bits (437), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 114/298 (38%), Positives = 166/298 (55%), Gaps = 9/298 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H PV+L +V L + K+ILD TFG GGYS K SN VIA+DRD + ++ Sbjct: 8 HYPVMLREVTNFL--SDNKLILDCTFGGGGYSSEILKNYSNSKVIAIDRDIEIIQFAKKL 65 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 + Y ++F FS++ +D +FDLGVS Q+ RGFSF L M M Sbjct: 66 EKKYLKRFVFKNLKFSEIHKVKEINQIDYFIFDLGVSHFQLKDMKRGFSFSSDDSLSMSM 125 Query: 138 SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK 197 + + A +++ + + KDL IL GEEK AS+IA+ I+ R++ + + L+ +I+ Sbjct: 126 GLTDLDAEELIRKVSEKDLKNILKFFGEEKFASKIANKIINVRKNKNISSGKKLAEIIE- 184 Query: 198 TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRL 257 TV F K N+ HP+T+SFQALR+ VN E+ E+ + L+ + K +I+V+FHSLED L Sbjct: 185 TVKFKK-NKTHPSTKSFQALRMIVNQELLEIYKSLKFIIENCKENSTIIIVTFHSLEDLL 243 Query: 258 VKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 VKK K R++ P S+ + +T K + P E+V N SRSAKLRA Sbjct: 244 VKKIINFYGKKTSTSRYL-PQDSDIKKMPIKILTNKAIKPNSEEVNVNPSSRSAKLRA 300 >gi|134095979|ref|YP_001101054.1| S-adenosyl-methyltransferase MraW [Herminiimonas arsenicoxydans] gi|263456141|sp|A4G8U6|RSMH_HERAR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|133739882|emb|CAL62933.1| S-adenosyl-dependent methyl transferase MraW [Herminiimonas arsenicoxydans] Length = 321 Score = 172 bits (437), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 112/308 (36%), Positives = 180/308 (58%), Gaps = 16/308 (5%) Query: 20 HVPVLLEKVI---ALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSC 73 H VLLE+ + AL + +D TFG GG+SR ++G N ++A D+D A++ Sbjct: 11 HRTVLLEEAVDALALDGERANGMYVDGTFGRGGHSRLILQRLGENGCLLAFDKDTQAIAN 70 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 T+ D ++F++ +F+ L + ++G V+GV+ DLG+SS Q+D RGFSF+ Sbjct: 71 AA-TIED--KRFAIVHDSFATLSTALAERGIAQVNGVLLDLGISSPQVDDAARGFSFRAD 127 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 GPLDMRM + GISA++ + + + +++ GEE+ A +IA AIV R P +T+ Sbjct: 128 GPLDMRMDTTRGISAAEWLATETEQKIEKVIREYGEERFAFQIAKAIVAGRAVQPISSTR 187 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ ++ + V + + PATR+FQA+RIF+N E+EEL L A + L G L+V+S Sbjct: 188 QLAEIVARAVKTREKGK-DPATRTFQAIRIFINQELEELEVVLNEAYRHLAPHGRLVVIS 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK+F AS++ R + I + P + + + P+ +++ N R+RS Sbjct: 247 FHSLEDRIVKQFMASKANVPQPDRRLPIRAVDLPQPEMKLIAR-IKPSAAEISANPRARS 305 Query: 309 AKLRAGMR 316 A +R R Sbjct: 306 AVMRVAER 313 >gi|319760278|ref|YP_004124216.1| S-adenosyl-L-methionine-dependent methyltransferase [Candidatus Blochmannia vafer str. BVAF] gi|318038992|gb|ADV33542.1| S-adenosyl-L-methionine-dependent methyltransferase [Candidatus Blochmannia vafer str. BVAF] Length = 330 Score = 172 bits (437), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 110/315 (34%), Positives = 175/315 (55%), Gaps = 24/315 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR----SFCKMGSNVIALDRDPFAVSCGQ 75 H VLL + I LN P + +D TFG+GG+SR K G +IA D+D +V G+ Sbjct: 3 HKSVLLHEAIEALNIDPSGIYIDGTFGSGGHSRLILSKLTKFG-RLIAFDKDHLSVEIGK 61 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 T+ + +FS+ +FS+ +YV + ++G++ DLG+ Q+ +RGFSF K G Sbjct: 62 -TIFNQDSRFSIVHMSFSKAMNYVHNVKLLGSINGILLDLGICENQLFDANRGFSFIKDG 120 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM +G +A+ + ++ + +T +L LGEE+ +IA +I+ R+ P T + Sbjct: 121 PLDMRMDITTGQTAAQWIAMSSQEHITWVLKNLGEERFCKKIAKSILFHRRIRPIVRTHE 180 Query: 191 LSSLIQKTVYFS--KNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 LS ++ + S K N HPATRSF A+R+ +N E+E +A+ L+ L G L+ Sbjct: 181 LSKIVSDIIVPSRIKKNSWNKHPATRSFLAIRMHINKELEAIAKVLKDMYNLLSNKGRLV 240 Query: 247 VVSFHSLEDRLVKKFFASRS-------GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 ++SF+SLEDRLVK F S + +I + F++I K ++PT+++ Sbjct: 241 IISFNSLEDRLVKHFIYKHSRIFPELPKLALTESQIINIFSSSCQFKNIGK--IIPTKQE 298 Query: 300 VAFNRRSRSAKLRAG 314 + N R+RSA LR Sbjct: 299 IKENIRARSAILRCA 313 >gi|172035001|ref|YP_001801502.1| S-adenosyl-methyltransferase MraW [Cyanothece sp. ATCC 51142] gi|263446171|sp|B1WZ70|RSMH_CYAA5 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|171696455|gb|ACB49436.1| putative methyltransferase [Cyanothece sp. ATCC 51142] Length = 315 Score = 172 bits (437), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 120/305 (39%), Positives = 167/305 (54%), Gaps = 33/305 (10%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 H PVL ++VI L P LDAT G GG+SR + +V +D D A++ QE Sbjct: 33 HTPVLCQEVIDGLAIEPNGHYLDATLGRGGHSRLILEAFPDVRVTGIDLDEEAIAITQEN 92 Query: 78 ---MRDYKEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 M D + Q ++Q F+ DY + G +G++ DLGVSS Q D +RGFSF+ PL Sbjct: 93 FSLMGDKRLQ--VWQGNFA---DYPGEIGEFNGIIADLGVSSPQFDVPERGFSFRHQAPL 147 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ ++A +++N + L + GEE+++ IA +V++R PF+TT +L+ Sbjct: 148 DMRMNREQSLTAGEIINHWDQTSLADLFYQYGEERRSRAIARRLVQQR---PFETTTELA 204 Query: 193 SLIQKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 I K + RIHPATR FQALRI VN+E+ L + L A LK GG + ++SFH Sbjct: 205 EAIAKCFPPKQRYGRIHPATRVFQALRIAVNDELGSLERFLEKAPHWLKPGGRIGIISFH 264 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR VK F R ++ V ITKK ++P E+ N RSRSAKL Sbjct: 265 SLEDRRVKYSF--RDSLLLDV---------------ITKKPIIPQPEEEEKNPRSRSAKL 307 Query: 312 RAGMR 316 R R Sbjct: 308 RFAQR 312 >gi|139473295|ref|YP_001128010.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes str. Manfredo] gi|54037825|sp|P65432|RSMH_STRP3 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|54037826|sp|P65433|RSMH_STRP8 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|54041488|sp|P65431|RSMH_STRP1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|88909223|sp|Q48RZ0|RSMH_STRPM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262826830|sp|A2RD40|RSMH_STRPG RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262831446|sp|Q1JAG5|RSMH_STRPB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262831450|sp|Q1JKL7|RSMH_STRPC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262831454|sp|Q1JFK8|RSMH_STRPD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|134271541|emb|CAM29765.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes str. Manfredo] Length = 316 Score = 172 bits (437), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 108/308 (35%), Positives = 174/308 (56%), Gaps = 12/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGS--NVIALDRDPFAVSCGQE 76 HV VLL + + +L+ P + +DAT G G+S K+G ++ D+D A+ Q Sbjct: 7 HVTVLLHETVDMLDIKPDGIYVDATLGGSGHSAYLLSKLGEEGHLYCFDQDQKAIDNAQV 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSG 131 T++ Y K Q + + F L+ + GVD G+++DLGVSS Q+D +RGFS+++ Sbjct: 67 TLKSYIDKGQVTFIKDNFRHLKARLTALGVDEIDGILYDLGVSSPQLDERERGFSYKQDA 126 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S ++A +VVN DL +I GE+K + +IA I + R P +TT + Sbjct: 127 PLDMRMDRQSLLTAYEVVNTYPFNDLVKIFFKYGEDKFSKQIARKIEQARAIKPIETTTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ LI+ + + HPA + FQA+RI VN+E+ + ++ A + L G + V++ Sbjct: 187 LAELIKAAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQDAMELLALDGRISVIT 246 Query: 250 FHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDRL K+ F S V +IP + P F+ +++K ++P+ ++ N+R+ S Sbjct: 247 FHSLEDRLTKQLFKEASTVDVPKGLPLIPEDMKPK-FELVSRKPILPSHSELTANKRAHS 305 Query: 309 AKLRAGMR 316 AKLR + Sbjct: 306 AKLRVAKK 313 >gi|81428357|ref|YP_395357.1| PutativeS-adenosylmethionine-dependent-methyltran sferase [Lactobacillus sakei subsp. sakei 23K] gi|88909201|sp|Q38XN3|RSMH_LACSS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|78609999|emb|CAI55047.1| PutativeS-adenosylmethionine-dependent-methyltransferase [Lactobacillus sakei subsp. sakei 23K] Length = 318 Score = 172 bits (436), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 102/310 (32%), Positives = 174/310 (56%), Gaps = 10/310 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77 H VLL++ + LN P + +DAT G GG+S ++ + D+D A+ ++ Sbjct: 7 HQSVLLKETVDALNVQPDGIYVDATLGGGGHSEYLLSQLTTGHLYSFDQDDHALESSRQR 66 Query: 78 MRDYKE--QFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + Y + Q + ++ F L+ + ++G+ DG+++DLGVSS Q D RGFS++K P Sbjct: 67 LAKYADAGQVTFIKSNFRFLKIALAEQGITKIDGILYDLGVSSPQFDDAQRGFSYKKEAP 126 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM ++A VVN+ + + L +I GEEK + ++A I ++R+ AP +TT L Sbjct: 127 LDMRMDQGAELTAYTVVNEWSYQQLIKIFFRYGEEKFSKQVARKIEQQREIAPIETTIQL 186 Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 + LI++ + ++ HPA R FQA+RI VN+E+ + + A +K GG + +++F Sbjct: 187 ADLIKEAIPAPARRTGGHPAKRIFQAIRIAVNDELGAIEDSVEQAIPLVKVGGRISIITF 246 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDRLVK F ++ + + I V + + +K ++PT++++ N R+ SA Sbjct: 247 QSLEDRLVKTMFKEQATLPDIPKGLPIMPGTEKTVLKLVNRKPILPTEDELTVNHRAHSA 306 Query: 310 KLRAGMRTVE 319 KLR + E Sbjct: 307 KLRVAEKQKE 316 >gi|260584184|ref|ZP_05851932.1| S-adenosyl-methyltransferase MraW [Granulicatella elegans ATCC 700633] gi|260158810|gb|EEW93878.1| S-adenosyl-methyltransferase MraW [Granulicatella elegans ATCC 700633] Length = 313 Score = 172 bits (436), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 104/304 (34%), Positives = 173/304 (56%), Gaps = 11/304 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77 HV VLL + + L P + +D T G G+S ++ D+D A+ + Sbjct: 4 HVTVLLHETVDNLEVKPDGIYVDCTLGGAGHSEYLLGQLTTGHLYCFDQDMNAIDNAKIR 63 Query: 78 MRDYKEQ--FSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 ++++ ++ + A F +Q + + G VDG+++DLGVSS Q+D +RGFS+ ++ Sbjct: 64 LKNFIDEGKVTFIHANFRMIQKKLNELGIKKVDGILYDLGVSSPQLDQIERGFSYHQNAI 123 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + ++A +++N+ + +L RI GEEK + +IA I + RQ +TT +L Sbjct: 124 LDMRMDQTAPLTAKEIINEWSYDELVRIFYRYGEEKFSKQIARNIERIRQDHGIETTGEL 183 Query: 192 SSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+ ++ ++ HPA R FQA+RI VN+E+ + L A L+ GG + V+SF Sbjct: 184 VDIIRDSIPAAARRKGGHPAKRIFQAVRIAVNDELAAVEDSLEQAFDLLEVGGRISVISF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 HSLEDR+VK F +S +++ +P A F+ IT+K ++PT+E++ N RS+S Sbjct: 244 HSLEDRIVKTMFKQQSTVEQGPKNLPILPGQLESANFKLITRKPILPTEEEMQENSRSQS 303 Query: 309 AKLR 312 AKLR Sbjct: 304 AKLR 307 >gi|152967151|ref|YP_001362935.1| S-adenosyl-methyltransferase MraW [Kineococcus radiotolerans SRS30216] gi|263456185|sp|A6WCY2|RSMH_KINRD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|151361668|gb|ABS04671.1| S-adenosyl-methyltransferase MraW [Kineococcus radiotolerans SRS30216] Length = 391 Score = 172 bits (436), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 111/324 (34%), Positives = 176/324 (54%), Gaps = 12/324 (3%) Query: 1 MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM 57 ++ ++ + H H V+LE+ +L+PA PG V +D T G GG++ + Sbjct: 9 VQGRAGEGAEERAHDAARRHASVMLERCTRVLSPALDHPGAVTVDVTLGMGGHAHELLRR 68 Query: 58 --GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLG 112 G ++ +DRDP A+ + ++ ++ +L + L + + D G VD V FDLG Sbjct: 69 HPGLRLVGMDRDPQALELAAHRLHEFADRITLVHSVSDGLGEALDDLGLDTVDAVFFDLG 128 Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASR 171 VSS+Q+D +RGFS+ + LDMRM +A+DV+N + LTRIL + GEE+ A R Sbjct: 129 VSSLQLDEAERGFSYARDTALDMRMDPGAPTTAADVLNTYSHSQLTRILRVYGEERFAPR 188 Query: 172 IAHAIVKRRQSAPFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQ 230 IA AIV+ R PF ++ L L++ V ++ +PA R+FQALRI VN+E+ + + Sbjct: 189 IASAIVRERALEPFTSSARLVDLVRANVPAATRRTGGNPAKRTFQALRIEVNDELGVVER 248 Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSIT 289 L A + L G L V++FHSLEDR+VK S +P+ + P + +T Sbjct: 249 SLPVAFERLAPEGRLAVLTFHSLEDRIVKNALRELSSSSAPPDLPFVPAGSGPRA-ELLT 307 Query: 290 KKVVVPTQEDVAFNRRSRSAKLRA 313 + + ++A N R+ SA+LRA Sbjct: 308 RGGETADEAELAENPRAASARLRA 331 >gi|62184992|ref|YP_219777.1| S-adenosyl-methyltransferase MraW [Chlamydophila abortus S26/3] gi|68565433|sp|Q5L6B5|RSMH_CHLAB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|62148059|emb|CAH63812.1| putative S-adenosyl-methyltransferase [Chlamydophila abortus S26/3] Length = 298 Score = 172 bits (436), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 115/302 (38%), Positives = 161/302 (53%), Gaps = 24/302 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI---ALDRDPFAVSCGQE 76 H+PVL+ + ++L K D T GAGG++ +F +++ A DRD A+S +E Sbjct: 7 HIPVLVNECLSLFADRHPKFFCDVTVGAGGHAEAFLSAYPSIVSYDASDRDVAALSMAKE 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ-KSGPLDM 135 + + ++ A+F L + DG++ DLGVSSMQ+D RGFSFQ LDM Sbjct: 67 HLEKFGDRVHFHHASFEDLSKDPREHVYDGILADLGVSSMQLDNLSRGFSFQGDDHALDM 126 Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM + GI+AS+V++ ++L +I GEE Q A AIV R+ T +DL Sbjct: 127 RMDVTKGITASEVLHTLREEELGKIFREYGEEPQWKNAAKAIVHFRRRKKIVTVRDLKEA 186 Query: 195 IQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 K + +IHP T FQALR++VN E +L L SA + L GG LI++SF S Sbjct: 187 TAKVFPSYRLRKKIHPLTLIFQALRVYVNQEDVQLKVLLESAMRWLAPGGRLIIISFCSS 246 Query: 254 EDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 EDR VK FF A +SG M +TKKV++PT E++ N R RSAKL Sbjct: 247 EDRPVKWFFREAEKSGLGMI----------------LTKKVIMPTYEEIRKNPRCRSAKL 290 Query: 312 RA 313 R Sbjct: 291 RC 292 >gi|56476234|ref|YP_157823.1| S-adenosyl-methyltransferase MraW [Aromatoleum aromaticum EbN1] gi|68565443|sp|Q5P6Y9|RSMH_AZOSE RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|56312277|emb|CAI06922.1| S-adenosyl-methyltransferase mraW [Aromatoleum aromaticum EbN1] Length = 312 Score = 172 bits (436), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 123/306 (40%), Positives = 172/306 (56%), Gaps = 12/306 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 HV VLL + + L PG V +D TFG GG+SR+ K+ ++ +IA DRDP A+ + Sbjct: 7 HVTVLLAEAVEALAIRPGGVYVDGTFGRGGHSRAILAKLDADGRLIAFDRDPRAIEVAR- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + D + + A FS + + G VDGV+ DLGVSS Q+D RG SF+ PL Sbjct: 66 ALPDPR--LTAVHAPFSAFAEELDRLGLEHVDGVLLDLGVSSPQLDEAARGMSFRFDAPL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S G + + + A+V +T +L GEE+ A IA AI R +T+ L+ Sbjct: 124 DMRMDTSRGQTVAQWLADASVAQITEVLRDYGEERFAYAIAKAIAAARAGGAVASTRQLA 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +++K V + + HPATRSFQALRIF+N E+EEL+ L +A + LK GG L+ +SFHS Sbjct: 184 EIVEKAVRTREPGQ-HPATRSFQALRIFINQELEELSLVLPAAVERLKPGGRLVAISFHS 242 Query: 253 LEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK+F S + R + + P + K P +VA N RSRSA + Sbjct: 243 LEDRIVKRFMRDESRPPQLPSRLPLRAAELPQPRLRLVGKSQRPGPGEVAANPRSRSAVM 302 Query: 312 RAGMRT 317 R RT Sbjct: 303 RVAERT 308 >gi|323142009|ref|ZP_08076860.1| S-adenosyl-methyltransferase MraW [Phascolarctobacterium sp. YIT 12067] gi|322413541|gb|EFY04409.1| S-adenosyl-methyltransferase MraW [Phascolarctobacterium sp. YIT 12067] Length = 310 Score = 172 bits (436), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 114/315 (36%), Positives = 174/315 (55%), Gaps = 28/315 (8%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPFAVSCGQE 76 H +LL + + L + +D T G G+S +F + G +I +D+D A++ G E Sbjct: 5 HTSILLAESVDFLITDKNGIYVDCTMGGAGHSSAFAAQLEAGGLLIGIDQDDDAIAAGSE 64 Query: 77 TMRDYKEQFSLFQAT-------FSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 + + +F+ A FSQ+ D + +DG+ FDLGVSS Q+D +RGFS+ Sbjct: 65 RLLN---KFTCKTAVAKSNFEIFSQVLDSMGIDEIDGIFFDLGVSSYQLDTPERGFSYMH 121 Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM+ + + A +VN ++L I+ GEE+ A RIA IV R+ P TT Sbjct: 122 DGPLDMRMNKEASLDAEYIVNHYKEEELADIIHRYGEERWAKRIAQFIVAARKEKPLTTT 181 Query: 189 QDLSSLIQKTVYFSKNNRI---HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 +L +I+K + K R+ HPA R+FQA+RI VNNE+ LA + A LK+GG + Sbjct: 182 FELVDVIKKAI--PKGARLDGPHPAKRTFQAIRIEVNNELGILADTMERAVNRLKSGGRI 239 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF--QSITKKV--VVPTQEDVA 301 V++FHSLEDR++K+ FA +A P V + + +K +VP++ +V Sbjct: 240 GVITFHSLEDRIIKQTFAK-----LAKGCTCPPQLPVCVCGKKPLLRKTGNIVPSKAEVE 294 Query: 302 FNRRSRSAKLRAGMR 316 N RSRSA+LR ++ Sbjct: 295 ENPRSRSARLRYAIK 309 >gi|150009093|ref|YP_001303836.1| S-adenosyl-methyltransferase MraW [Parabacteroides distasonis ATCC 8503] gi|167011834|sp|A6LEV0|RSMH_PARD8 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|149937517|gb|ABR44214.1| S-adenosyl-methyltransferase MraW [Parabacteroides distasonis ATCC 8503] Length = 305 Score = 172 bits (436), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 111/301 (36%), Positives = 169/301 (56%), Gaps = 17/301 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76 HVPV+L + + L+ P + +D TFG GG+SR K +GS + D+D A E Sbjct: 9 HVPVMLRESLEGLDIRPDGIYVDVTFGGGGHSREILKRLGSEGELYGFDQDADA-----E 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +F+ ++ F L +++ G VDG++ DLGVSS D DRGFSF+ G Sbjct: 64 HNVPADPRFTFVRSNFRYLYNFMRYYGESGEVDGLLADLGVSSHHFDDKDRGFSFRFDGT 123 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ +G +A+D+VN + L + + GE K + ++A +VK R++ +T D Sbjct: 124 LDMRMNTRAGQTAADIVNNYTAEALADVFYLYGELKVSRKLASVLVKARETKKIETIGDF 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + K+ + FQALRI VN+E+ L + LRS + L+ GG L+V+++H Sbjct: 184 LEVIKP--FTGKDKEKKFLAQVFQALRIEVNDEMRALKEMLRSTLRVLRPGGRLVVITYH 241 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDRLVK F + + + + + P F+ + KV+VPT E+V N RSRSAKL Sbjct: 242 SLEDRLVKNFLKTGNFEGKCEQDFFGNVRSP--FRLVNNKVIVPTDEEVERNPRSRSAKL 299 Query: 312 R 312 R Sbjct: 300 R 300 >gi|116628390|ref|YP_821009.1| S-adenosyl-methyltransferase MraW [Streptococcus thermophilus LMD-9] gi|68565436|sp|Q5LY91|RSMH_STRT1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|122267015|sp|Q03J09|RSMH_STRTD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|116101667|gb|ABJ66813.1| Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Streptococcus thermophilus LMD-9] gi|312279018|gb|ADQ63675.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Streptococcus thermophilus ND03] Length = 316 Score = 172 bits (436), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 111/309 (35%), Positives = 171/309 (55%), Gaps = 14/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 HV VLL + + +L+ P + +DAT G G+S S ++ D+D A+ Q Sbjct: 7 HVTVLLHETVDMLDIKPDGIYVDATLGGAGHSSYLLSQLSEKGHLYCFDQDQKAIDNAQV 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++DY K + + F L+ + GV DG+++DLGVSS Q+D +RGFS+++ Sbjct: 67 RLKDYIDKGMVTFIKDNFRNLKSNLEALGVSEIDGILYDLGVSSPQLDERERGFSYKQDA 126 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM+ + ++A DVVN DL RI GE+K + +IA I + RQ P +TT + Sbjct: 127 KLDMRMNEEASLTAYDVVNTYPYNDLVRIFFKYGEDKFSKQIARKIEQARQVKPIETTTE 186 Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ +I K+ +K + HPA + FQA+RI VN+E+ + ++ A L G + V+ Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQEALDLLAVDGRISVI 245 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F S V IP + P V + +K ++P+QE++ N RS Sbjct: 246 TFHSLEDRLTKQLFKEASTVDVPKGLPFIPEDLQPKV-ALVNRKPILPSQEELEANNRSH 304 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 305 SAKLRVAKK 313 >gi|167912660|ref|ZP_02499751.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 112] Length = 313 Score = 172 bits (436), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 117/311 (37%), Positives = 181/311 (58%), Gaps = 19/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMG--SNVIALDRDPFAVSCGQE 76 H VLL++ + L V +D TFG GG+SR+ ++G +IA D+DP A+ E Sbjct: 7 HRTVLLDEAVDALVTRLDGVYVDGTFGRGGHSRAVLARLGDAGRLIAFDKDPRAIETA-E 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ D + F + +F+ ++ + +G V GV+ DLGVSS Q+D RGFSF+ +GPL Sbjct: 66 SIEDAR--FEIVHDSFAAMKGALDARGIGRVSGVLLDLGVSSPQVDDPARGFSFRANGPL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTT 188 DMRM + G SA++ + +A+V++LT ++ GEE+ A +IA AIV RR + P +T Sbjct: 124 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRLGPLDST 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ ++ V + + PATR+FQA+RI VN E+ +L L +A L+ GG L+V+ Sbjct: 184 GELAQIVGHVVKTREKGK-DPATRTFQAIRIHVNQELADLQVVLEAALSLLEQGGRLVVI 242 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH--PAVFQSITKKVVVPTQEDVAFNRRS 306 SFHSLEDR+VK+F + + AV +P A P + + + P +VA N R+ Sbjct: 243 SFHSLEDRIVKRFLQAHA-SAPAVDRRLPIRAADLPRPPLKLLGR-MFPNDAEVAANPRA 300 Query: 307 RSAKLRAGMRT 317 RSA +R R Sbjct: 301 RSAVMRIAERV 311 >gi|116491168|ref|YP_810712.1| SAM-dependent methyltransferase for cell envelope biogenesis [Oenococcus oeni PSU-1] gi|290890684|ref|ZP_06553754.1| hypothetical protein AWRIB429_1144 [Oenococcus oeni AWRIB429] gi|122276650|sp|Q04ES5|RSMH_OENOB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|116091893|gb|ABJ57047.1| SAM-dependent methyltransferase for cell envelope biogenesis [Oenococcus oeni PSU-1] gi|290479659|gb|EFD88313.1| hypothetical protein AWRIB429_1144 [Oenococcus oeni AWRIB429] Length = 314 Score = 172 bits (436), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 109/303 (35%), Positives = 169/303 (55%), Gaps = 10/303 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77 HV V L + + L + +DAT G GG++ K + +V + D+D A+ ++ Sbjct: 7 HVTVFLRQAVENLAVKTNGIYVDATLGGGGHTDLLLKKALHGHVYSFDQDENAIDFNKKR 66 Query: 78 M-RDYKE-QFSLFQATFSQL---QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 ++ E + SL + F L + + +DG+VFDLGVSS Q D RGFS++ Sbjct: 67 FSKEISEGRLSLIHSNFQNLIKELNLLKVFAIDGIVFDLGVSSPQFDDEKRGFSYRSDAR 126 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S + A +VN KDL I+ GEEK AS IA I+KRR+ P TT++L Sbjct: 127 LDMRMDQSQSLDAYQIVNTWEYKDLASIINRYGEEKFASSIARKIIKRREVQPIITTEEL 186 Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 I++ + + + HPA ++FQA+RI VN+E+ L + L+ A + L +GG + V++F Sbjct: 187 VETIKEALPDKILHKKGHPAKKTFQAIRIAVNDELNVLQEALKQASQLLNSGGRISVITF 246 Query: 251 HSLEDRLVKKFFASRSGK-VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK FF + K + + +P F+ +TK ++P+ E++ N R+ SA Sbjct: 247 QSLEDRIVKHFFNQLATKNQLPSKLPVPDKFIQEEFKLLTKHPLIPSVEEIEENHRAHSA 306 Query: 310 KLR 312 KLR Sbjct: 307 KLR 309 >gi|323343877|ref|ZP_08084104.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Prevotella oralis ATCC 33269] gi|323095696|gb|EFZ38270.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Prevotella oralis ATCC 33269] Length = 304 Score = 172 bits (435), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 113/300 (37%), Positives = 163/300 (54%), Gaps = 16/300 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76 H+PVLL++ I LN P V +D TFG GG+SR + +G N + + D+D Q Sbjct: 9 HIPVLLKESIDGLNIQPEGVYVDVTFGGGGHSREILRRLGKNGRLYSFDQD---ADAEQN 65 Query: 77 TMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + D +F+ ++ F L++ Y +DG++ DLGVSS D RGFSF+ + PL Sbjct: 66 IVAD--SRFTFVRSNFRYLKNWMRYYKIDHIDGLLADLGVSSHHFDDESRGFSFRFNAPL 123 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +G +A+D+VN+ + + L + + GE K + RIA AIVK R + TT+ Sbjct: 124 DMRMNKRAGTTAADIVNKYDEETLANVFYLYGELKNSRRIAAAIVKARATYEIGTTRAFI 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 I+ F + + FQALRI VN+E+ L + L A K L GG L ++++HS Sbjct: 184 DAIEPL--FKREREKKDMAKLFQALRIEVNHEMRALKEMLEGASKCLGTGGRLSIITYHS 241 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK R+G V H F I KV+ P+ E+ N RSRSAKLR Sbjct: 242 LEDRMVKNMM--RTGNVEGKLHQDFYGHIETPFVLINSKVITPSHEEQEQNPRSRSAKLR 299 >gi|50365212|ref|YP_053637.1| cell membrane substrate S-adenosyl-methyltransferase [Mesoplasma florum L1] gi|54036182|sp|Q6F170|RSMH_MESFL RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|50363768|gb|AAT75753.1| cell membrane substrate S-adenosyl-methyltransferase [Mesoplasma florum L1] Length = 308 Score = 172 bits (435), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 109/306 (35%), Positives = 168/306 (54%), Gaps = 21/306 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77 H+PVLL++ I LN + +D T G G+S K + ++D+D A+ G E Sbjct: 4 HIPVLLKESIEYLNIKENGIYVDCTLGRAGHSSEILKKLKDGKLFSIDQDETAILEGTEK 63 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + F + + F + + +G VDG+++DLGVSS Q D +RGFS++ GPLD Sbjct: 64 LTKISNNFKILEGNFVNISAMLAMQGIFEVDGILYDLGVSSPQFDVAERGFSYRFDGPLD 123 Query: 135 MRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 MRM + + ++A +VN+ ++L +IL G+EK A IA I+ R P TT +L Sbjct: 124 MRMDRANNSLTAHKIVNEYTQEELEQILWNYGDEKFARSIAKNIILSR---PINTTFELV 180 Query: 193 SLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 S+I+K++ K + HPA ++FQALRI VNNE+E L L + LK G ++V++F Sbjct: 181 SVIKKSLPAKILKQQK-HPAKKTFQALRIRVNNEMETLESSLEQSLNLLKPKGRVVVITF 239 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305 HSLE+++VK F + + + SN + F+ + KK + PT +V N R Sbjct: 240 HSLEEKVVKNIFKKYT---LDEQQFYLSNLPYEIESSKDFKLLFKKPLKPTNTEVENNNR 296 Query: 306 SRSAKL 311 S SAKL Sbjct: 297 SHSAKL 302 >gi|317129306|ref|YP_004095588.1| S-adenosyl-methyltransferase MraW [Bacillus cellulosilyticus DSM 2522] gi|315474254|gb|ADU30857.1| S-adenosyl-methyltransferase MraW [Bacillus cellulosilyticus DSM 2522] Length = 310 Score = 172 bits (435), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 108/304 (35%), Positives = 170/304 (55%), Gaps = 11/304 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSN--VIALDRDPFAVSCGQ 75 +H VL E+ + LN V +D T G GG+S M G+N +I+ D+D A+S + Sbjct: 3 EHETVLKEETVKGLNIHEDGVYVDCTLGGGGHSERIASMLGANGKLISFDQDEVALSHAK 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + ++++ + F L+ + G VDG VFDLGVSS Q D +RGFS++ P Sbjct: 63 ERLAPFRDKIIFVHSNFQYLKQELTHLGYSSVDGFVFDLGVSSPQFDEPERGFSYRFDAP 122 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM ++A +VVN +D+ +++ GEE+ A IA I K R+ +P +TT +L Sbjct: 123 LDMRMDRGQSLTAYEVVNNWPFEDIMKVISRYGEERFAKHIARKIEKAREVSPIKTTFEL 182 Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+ + ++ HPA R+FQA+RI VN+E+ Q L A G + V++F Sbjct: 183 VDIIKDAIPAPARRKGGHPAKRTFQAIRIAVNDELNVFEQALYDAIDMTTEKGRIAVITF 242 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 HSLEDR+ K F ++S R + IP + P + + KK ++ ++E++ N R++S Sbjct: 243 HSLEDRICKHVFKNKSTPKDLPRGLPVIPESHKPELML-VNKKPILASEEELENNSRAQS 301 Query: 309 AKLR 312 AKLR Sbjct: 302 AKLR 305 >gi|303279384|ref|XP_003058985.1| predicted protein [Micromonas pusilla CCMP1545] gi|226460145|gb|EEH57440.1| predicted protein [Micromonas pusilla CCMP1545] Length = 295 Score = 172 bits (435), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 112/292 (38%), Positives = 159/292 (54%), Gaps = 20/292 (6%) Query: 38 KVILDATFGAGGYSRSFCKMGSNV-----IALDRDPFAVSCGQETMR--DYKEQFSLFQA 90 K +D T GAGG++ + +G ++ + D DP A + R + F+A Sbjct: 2 KTYVDGTMGAGGHACAV--IGEHLELVTFVGFDVDPLAHAIAPRGARVLELNTVLDNFRA 59 Query: 91 TFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM--SCSGISASDVV 148 +L + + VD ++ DLGVSSM +D +RGFSF GPLDMRM SC+ SA DVV Sbjct: 60 MRFRLDELELNGKVDAILLDLGVSSMHLDSPERGFSFGNDGPLDMRMGPSCA-FSAMDVV 118 Query: 149 NQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT--VYFSKNNR 206 N+ +D+ R++ GEEK IA I +RR AP TT L I + V ++ Sbjct: 119 NEWPEEDIARVIRDYGEEKHWRLIARRICERRAEAPILTTSALVRAIGRVPGVKKGRSGN 178 Query: 207 IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRS 266 +HPATR+FQ +RI VN+E+ + + +A AL GG L V+SFHSLED++VK F R+ Sbjct: 179 VHPATRTFQGIRIAVNDELGAIEDAIPAAIDALAPGGRLGVISFHSLEDKIVKDIFRERA 238 Query: 267 GKVM-----AVRHMIP-SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 G+ V P P V + IT+K + +++V N RSRSAKLR Sbjct: 239 GRAPPPDEGPVSAWAPQPEPPPKVVKLITRKPLSADEDEVRENARSRSAKLR 290 >gi|289426145|ref|ZP_06427891.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes SK187] gi|289153310|gb|EFD02025.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes SK187] Length = 337 Score = 172 bits (435), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 111/305 (36%), Positives = 167/305 (54%), Gaps = 13/305 (4%) Query: 20 HVPVLLEKVIALLN---PAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCG 74 H+PV+ +++ LL + +V +D T G GG++ + + +V + +DRD A++ Sbjct: 14 HIPVMRARILDLLAVVLKSGRRVHVDGTLGMGGHAEAVLRRFPDVELVGIDRDQQALTMA 73 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + + ++ L A +L + + D G VD V+ DLG+SS QID +RGFS+ Sbjct: 74 EARLESFADRVHLVHAVHDELPEVLDDLGLDYVDSVLLDLGLSSFQIDEVERGFSYSVDS 133 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM SG +A+ ++N+++ L R+L GEEK A RI AIV R P +T+ Sbjct: 134 PLDMRMDQSSGRTAAQILNESDPGALVRMLREYGEEKFADRIVRAIVTERDRQPIETSGR 193 Query: 191 LSSLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L +I + + + HPA R+FQALRI VN E+E L L A L GG + V+ Sbjct: 194 LVEIITEAIPATVRRKRHSHPAKRTFQALRIAVNREMETLPAVLPRALDRLDVGGRIAVL 253 Query: 249 SFHSLEDRLVKKFFASRSGKVM-AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 S+HSLEDR VK+ F A M+P + A F +T+ P ++VA N RS Sbjct: 254 SYHSLEDRPVKEAFRDACADTAPAGLPMVPESM-AAKFNPVTRGAERPDADEVATNPRSA 312 Query: 308 SAKLR 312 SA+LR Sbjct: 313 SARLR 317 >gi|260826594|ref|XP_002608250.1| hypothetical protein BRAFLDRAFT_87928 [Branchiostoma floridae] gi|229293601|gb|EEN64260.1| hypothetical protein BRAFLDRAFT_87928 [Branchiostoma floridae] Length = 280 Score = 172 bits (435), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 99/236 (41%), Positives = 136/236 (57%), Gaps = 20/236 (8%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H PV++ +V+ L+P PG+V +D TFGAGG++++ + V A+DRDP A + Q Sbjct: 3 HTPVMVREVLDCLDPQPGQVYVDMTFGAGGHTKAILAAQPDTVVYAIDRDPAAHNMAQNI 62 Query: 78 MRDYKEQFSLFQATFSQL-----QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + Y + FS+L V + VDG +FD+G SSMQ D G RGFS + GP Sbjct: 63 AKQYGKSIRPVLGRFSELLYLLSSQNVQENTVDGFLFDVGASSMQFDQGGRGFSLSQDGP 122 Query: 133 LDMRMSCSGI-----SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 LDMRM +A+DVVN DL I+ GEEK A +I+ AIV R P T Sbjct: 123 LDMRMDGERFGNKQPTAADVVNSLGEDDLYGIIKTYGEEKHARKISSAIVDARNKIPITT 182 Query: 188 TQDL-----SSLIQKTVYFSK---NNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 T+ L S+L V+F+ N +HPAT++FQALRIFVN+E+ EL QGL++A Sbjct: 183 TKQLAGVVASALAPPGVFFAHDKLNRAVHPATKTFQALRIFVNDELNELYQGLQAA 238 >gi|332885960|gb|EGK06204.1| ribosomal RNA small subunit methyltransferase H [Dysgonomonas mossii DSM 22836] Length = 303 Score = 172 bits (435), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 112/306 (36%), Positives = 172/306 (56%), Gaps = 18/306 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGS--NVIALDRDPFAVSCGQE 76 H+PVLL + I +N P + +D TFG GG+SR ++G ++ A D+D A+ + Sbjct: 6 HIPVLLHESIDGMNIHPDSICVDVTFGGGGHSREILSRLGDKGHLYAFDQDEDAIKNIEP 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQ-KSGP 132 + +F+ ++ F L++++ VDGV + DLGVSS D DRGFSF+ + Sbjct: 66 S-----NKFTFIRSNFRYLKNFIKYHNVDGVDAILADLGVSSHHFDAEDRGFSFRFEDSD 120 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ G +A+ ++N + L + + GE KQ+ RIA IVK R+ P++ T DL Sbjct: 121 LDMRMNRKGGKTAAQILNTYTEEKLADVFYLYGELKQSRRIASVIVKTRKEKPYKKTSDL 180 Query: 192 SSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 + + V K +I ++FQALRI VN E+E L + L A LK GG L V+++ Sbjct: 181 LATLNSFVGRGEKEKKI--LAQAFQALRIEVNEEMEVLKEMLTQALDILKPGGRLSVITY 238 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDR+VK FF + + + + + P F+ I KV+ P++++ N RSRSAK Sbjct: 239 HSLEDRIVKNFFKTGNFEGKVEKDFFGNFETP--FKLINNKVITPSKDEEERNPRSRSAK 296 Query: 311 LRAGMR 316 LR + Sbjct: 297 LRVAEK 302 >gi|320535363|ref|ZP_08035477.1| S-adenosyl-methyltransferase MraW [Treponema phagedenis F0421] gi|320147765|gb|EFW39267.1| S-adenosyl-methyltransferase MraW [Treponema phagedenis F0421] Length = 317 Score = 172 bits (435), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 112/304 (36%), Positives = 167/304 (54%), Gaps = 12/304 (3%) Query: 20 HVPVLLEKVIALLNPA-PGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76 H VLL++ ++LL PA + +D T G GG++ +F K + I +D DP + + Sbjct: 5 HKSVLLQESLSLLKPASEDTLFVDGTLGEGGHTEAFLKTYPQLSAIGIDADPTIQAKAKL 64 Query: 77 TMRDYKEQFSLFQAT----FSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 ++ + + F F P + ++FDLG+S RGFSFQ P Sbjct: 65 RLQPFASRVQYFSGWSDDFFKNYSTEYPKPNI--ILFDLGISMFHYIESGRGFSFQAEEP 122 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMR++ + +SA++++N ++L I GEE+ + +IA AI RR+ F+T DL Sbjct: 123 LDMRINPATSLSAAEIINTYKEEELASIFYTYGEERFSRKIAGAICLRRKEQEFKTAGDL 182 Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 + +I K V + ++ RIHPATRSFQALRI VN E++ L L+ A + L G L V+SF Sbjct: 183 AEVIFKAVPPAYRHGRIHPATRSFQALRIKVNGELDRLPDLLKLAFQRLALNGKLGVISF 242 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK++F + M I + Q +T K V+PT E++ N SRSA Sbjct: 243 HSLEDRIVKRYFRDLAKNCRCPPEMPICKCGGRPLAQLLTGKPVIPTDEEIRVNPASRSA 302 Query: 310 KLRA 313 KLRA Sbjct: 303 KLRA 306 >gi|299142294|ref|ZP_07035427.1| S-adenosyl-methyltransferase MraW [Prevotella oris C735] gi|298576383|gb|EFI48256.1| S-adenosyl-methyltransferase MraW [Prevotella oris C735] Length = 315 Score = 172 bits (435), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 114/306 (37%), Positives = 168/306 (54%), Gaps = 17/306 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSC--- 73 HVPVLL+ + LN G + +D TFG GG+SR N + + D+D A Sbjct: 9 HVPVLLKPSVDGLNIQSGGIYVDVTFGGGGHSREILSRLDNQAHLYSFDQDADAEQNVMH 68 Query: 74 --GQETMRDYKE-QFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSF 127 G R + +F+ ++ F L++++ GV DG++ DLGVSS D RGFSF Sbjct: 69 REGSTEKRFVDDARFTFVRSNFRYLKNWMRYYGVEKIDGLLADLGVSSHHFDDESRGFSF 128 Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + PLDMRM+ +G++A+DVVN N + L + + GE KQ+ RIA A++K R Sbjct: 129 RFDAPLDMRMNKRAGLTAADVVNDYNEEALANLFYLYGELKQSRRIAAALIKARAQQRIA 188 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 TTQD L F + + FQALRI VN+E++ L + L+SA + L++GG L Sbjct: 189 TTQDF--LKATEPLFKREREKKDMAKLFQALRIEVNHEMDALKEMLQSATELLRSGGRLS 246 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+++HSLEDR+VK + + + V+ P F + KV+VP+ ++ N RS Sbjct: 247 VITYHSLEDRIVKNMMKAGNAEGKKVQDFYGRIETP--FNLVNNKVIVPSADEQQENPRS 304 Query: 307 RSAKLR 312 RSAKLR Sbjct: 305 RSAKLR 310 >gi|255015714|ref|ZP_05287840.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 2_1_7] Length = 305 Score = 172 bits (435), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 111/301 (36%), Positives = 169/301 (56%), Gaps = 17/301 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76 HVPV+L + + L+ P + +D TFG GG+SR K +GS + D+D A E Sbjct: 9 HVPVMLRESLEGLDIRPDGIYVDVTFGGGGHSREILKRLGSEGELYGFDQDADA-----E 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +F+ ++ F L +++ G VDG++ DLGVSS D DRGFSF+ G Sbjct: 64 HNIPADPRFTFVRSNFRYLYNFMRYYGESGEVDGLLADLGVSSHHFDDKDRGFSFRFDGA 123 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ +G +A+D+VN + L + + GE K + ++A +VK R++ +T D Sbjct: 124 LDMRMNTRAGQTAADIVNNYTAEALADVFYLYGELKVSRKLASVLVKARETKKIETIGDF 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + K+ + FQALRI VN+E+ L + LRS + L+ GG L+V+++H Sbjct: 184 LEVIKP--FTGKDKEKKFLAQVFQALRIEVNDEMRALKEMLRSTLRVLRPGGRLVVITYH 241 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDRLVK F + + + + + P F+ + KV+VPT E+V N RSRSAKL Sbjct: 242 SLEDRLVKNFLKTGNFEGKCEQDFFGNVRSP--FRLVNNKVIVPTDEEVERNPRSRSAKL 299 Query: 312 R 312 R Sbjct: 300 R 300 >gi|262383993|ref|ZP_06077129.1| methylase MraW [Bacteroides sp. 2_1_33B] gi|262294891|gb|EEY82823.1| methylase MraW [Bacteroides sp. 2_1_33B] Length = 305 Score = 172 bits (435), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 110/301 (36%), Positives = 170/301 (56%), Gaps = 17/301 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76 HVPV+L + + L+ P + +D TFG GG+SR K +GS + D+D A E Sbjct: 9 HVPVMLRESLEGLDIRPDGIYVDVTFGGGGHSRKILKRLGSEGELYGFDQDADA-----E 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +F+ ++ F L +++ G VDG++ DLGVSS D DRGFSF+ G Sbjct: 64 HNVPADPRFTFVRSNFRYLYNFMRYYGESGEVDGLLADLGVSSHHFDDKDRGFSFRFDGA 123 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ +G +A+D+VN + L + + GE K + ++A +VK R++ +T ++ Sbjct: 124 LDMRMNTRAGQTAADIVNNYTAEALADVFYLYGELKVSRKLASVLVKARETKKIETIEEF 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + K+ + FQALRI VN+E+ L + LRS + L+ GG L+V+++H Sbjct: 184 LEVIKP--FTGKDKEKKFLAQVFQALRIEVNDEMRALKEMLRSTLRVLRPGGRLVVITYH 241 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDRLVK F + + + + + P F+ + KV+VPT E+V N RSRSAKL Sbjct: 242 SLEDRLVKNFLKTGNFEGKCEQDFFGNVRSP--FRLVNNKVIVPTDEEVERNPRSRSAKL 299 Query: 312 R 312 R Sbjct: 300 R 300 >gi|315604430|ref|ZP_07879496.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Actinomyces sp. oral taxon 180 str. F0310] gi|315314136|gb|EFU62187.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Actinomyces sp. oral taxon 180 str. F0310] Length = 341 Score = 172 bits (435), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 113/308 (36%), Positives = 175/308 (56%), Gaps = 18/308 (5%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCG 74 HVPVLL + + +L PA PG V++DAT G GG++ + + VI +DRDP A++ Sbjct: 25 HVPVLLSECLDMLAPAIGAPGAVLVDATLGMGGHTEGALERFEDLTVIGIDRDPQAIALA 84 Query: 75 QETMRDYKEQFSLFQATFSQLQDYV-----PDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 + + + +F AT+ + + P VDG++ DLGVSS+Q+D DRGF++ K Sbjct: 85 SDRLERFGARFRAVHATYDHIDRVIEEQCGPGSRVDGILMDLGVSSLQLDEADRGFAYSK 144 Query: 130 SGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM +G SA+D++ A+ ++ RIL GEE+ A RIA I++RR AP T Sbjct: 145 DAPLDMRMDPTTGPSAADLLASASEGEIVRILRTYGEERFAPRIARLIIRRRDEAPITRT 204 Query: 189 QDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L +++ + ++ + +PA R+FQALR+ VN+E+ L + L A +L+ GG L+V Sbjct: 205 GELVDIVRSAIPAPARRSGGNPAKRTFQALRVAVNDELTILERALPRALASLRVGGRLVV 264 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVR---HMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 ++ SLEDR+VK R G A ++P P+ + +TK Q + N Sbjct: 265 EAYQSLEDRIVKDVL--RRGATSAAPPGLPIVPDEMAPS-LRLLTKGANRADQAEQDHNP 321 Query: 305 RSRSAKLR 312 RS S +LR Sbjct: 322 RSASVRLR 329 >gi|312863799|ref|ZP_07724037.1| S-adenosyl-methyltransferase MraW [Streptococcus vestibularis F0396] gi|311101335|gb|EFQ59540.1| S-adenosyl-methyltransferase MraW [Streptococcus vestibularis F0396] Length = 316 Score = 172 bits (435), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 111/309 (35%), Positives = 171/309 (55%), Gaps = 14/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 HV VLL + + +L+ P + +DAT G G+S S ++ D+D A+ Q Sbjct: 7 HVTVLLHETVDMLDIKPDGIYVDATLGGAGHSSYLLSQLSEKGHLYCFDQDQKAIDNAQV 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++DY K + + F L+ + GV DG+++DLGVSS Q+D +RGFS+++ Sbjct: 67 RLKDYIDKGMVTFIKDNFRNLRSNLEALGVFEIDGILYDLGVSSPQLDERERGFSYKQDA 126 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM+ + ++A DVVN DL RI GE+K + +IA I + RQ P +TT + Sbjct: 127 KLDMRMNEEASLTAYDVVNTYPYNDLVRIFFKYGEDKFSKQIARKIEQARQVKPIETTTE 186 Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ +I K+ +K + HPA + FQA+RI VN+E+ + ++ A L G + V+ Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQEALDLLAVDGRISVI 245 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F S V IP + P V + +K ++P+QE++ N RS Sbjct: 246 TFHSLEDRLTKQLFKEASTVDVPKGLPFIPEDLQPKV-ALVNRKPILPSQEELEANNRSH 304 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 305 SAKLRVAKK 313 >gi|154509049|ref|ZP_02044691.1| hypothetical protein ACTODO_01566 [Actinomyces odontolyticus ATCC 17982] gi|153798683|gb|EDN81103.1| hypothetical protein ACTODO_01566 [Actinomyces odontolyticus ATCC 17982] Length = 335 Score = 172 bits (435), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 118/309 (38%), Positives = 173/309 (55%), Gaps = 18/309 (5%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74 HVPVLL + + +L PA PG V++D T G GG++ + G VI +DRDP A+ Sbjct: 19 HVPVLLRECLDMLAPAIKRPGAVLVDGTLGMGGHTEGALERFEGLTVIGIDRDPQAIELA 78 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRGFSFQK 129 + + +F T+ + V ++ VDGV+ DLGVSS+Q+D DRGF++ K Sbjct: 79 SARLERFGTRFRAVHTTYDNIDVAVEEQLGTGARVDGVLMDLGVSSLQLDEADRGFAYSK 138 Query: 130 SGPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM + SG SA+D++ ++ +L RIL GEEK A RIA I++RR AP T Sbjct: 139 DAPLDMRMDATSGQSAADLLATSSEGELIRILRTYGEEKFAPRIARLIIRRRDDAPITRT 198 Query: 189 QDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L +I++ + ++ +PA R+FQALR+ VN+E+ L + L A +L+ GG L+V Sbjct: 199 GELVGIIREAIPAPARRTGGNPAKRTFQALRVAVNDELTILERALPRALSSLRVGGRLVV 258 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVR---HMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 S+ SLEDR+VK R G A +IP P+ + +TK Q + N Sbjct: 259 ESYQSLEDRIVKDVL--RRGSTSAAPPGLPVIPDEMAPS-LRLLTKGANKADQAEQDHNP 315 Query: 305 RSRSAKLRA 313 RS S +LR Sbjct: 316 RSASVRLRG 324 >gi|260910904|ref|ZP_05917546.1| S-adenosyl-methyltransferase MraW [Prevotella sp. oral taxon 472 str. F0295] gi|260634961|gb|EEX53009.1| S-adenosyl-methyltransferase MraW [Prevotella sp. oral taxon 472 str. F0295] Length = 319 Score = 172 bits (435), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 113/309 (36%), Positives = 173/309 (55%), Gaps = 19/309 (6%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYS-RSFCKMGSN--VIALDRDPFAV--- 71 G HVPVLL + + LN G V +D TFG GG++ KM + + + D+D A Sbjct: 11 GYHVPVLLAESVDALNIFKGGVYVDVTFGGGGHTCHILSKMDATARLFSFDQDADAEENT 70 Query: 72 ----SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRG 124 S GQ + + +F+ ++ F L +++ GV DG++ DLGVSS D +RG Sbjct: 71 RREGSEGQSPLAN-DNRFTFVRSNFRYLDNWMRYYGVEHVDGILADLGVSSHHFDDQERG 129 Query: 125 FSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 FSF+ PLDMRM+ + ++A+ V+N + + L + + GE +Q+ RIA AIVK R A Sbjct: 130 FSFRFDAPLDMRMNKNATLTAAQVLNTYDEEKLADVFFLYGEIRQSRRIASAIVKARAKA 189 Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 TTQ+ +++++ +F + FQALRI VNNE++ L + L++A + L GG Sbjct: 190 AVHTTQEFAAIVEP--FFKLEREKKEMAKLFQALRIEVNNEMDALKEMLQAASEWLGKGG 247 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 L V+++HSLEDR+VK F + + + + P F + KV+VPT ++ N Sbjct: 248 RLSVITYHSLEDRMVKNFMKTGNVEGKLSQDFFGRAQTP--FTLVNNKVIVPTADEQLRN 305 Query: 304 RRSRSAKLR 312 RSRSAKLR Sbjct: 306 PRSRSAKLR 314 >gi|319440248|ref|ZP_07989404.1| 16S rRNA m(4)C1402 methyltranserfase [Corynebacterium variabile DSM 44702] Length = 340 Score = 172 bits (435), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 97/267 (36%), Positives = 157/267 (58%), Gaps = 23/267 (8%) Query: 20 HVPVLLEKVIALLNP------APGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAV 71 HVPV+ ++++ L+ A VI+D T GAGG++ F + + V+ LDRDP A+ Sbjct: 14 HVPVMRDRMVELVGAGVEGTGATRPVIVDGTLGAGGHTEVFLETFPDAVVVGLDRDPNAI 73 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPD-------------KGVDGVVFDLGVSSMQI 118 + Q+ + + ++F ++ F L D + D GV G +FDLGVSSMQ+ Sbjct: 74 AQAQDRLARFGDRFIAYRTRFDGLGDALDDLASDGRLPGEFATTGVSGYLFDLGVSSMQL 133 Query: 119 DCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177 D +RGF++ + PLDMRM S ++A++V+N + DL +L G+E+ A +IA A++ Sbjct: 134 DQAERGFAYSQDAPLDMRMDPDSPLTAAEVLNTYSHGDLAHVLSAYGDERFAGKIASAVL 193 Query: 178 KRRQSAPFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236 + R+ PF T+ L L+ +T+ ++ HPA R+FQALR+ VN E++ LA + +A Sbjct: 194 REREQEPFTTSGRLVELLYRTIPAATRRTGGHPAKRTFQALRVEVNAELDSLAAVIPAAT 253 Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFA 263 L GG+ + +S+ SLED++VKK A Sbjct: 254 ARLGLGGVAVFMSYQSLEDKIVKKALA 280 >gi|226226826|ref|YP_002760932.1| putative S-adenosyl-methyltransferase [Gemmatimonas aurantiaca T-27] gi|263447553|sp|C1A8A2|RSMH_GEMAT RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|226090017|dbj|BAH38462.1| putative S-adenosyl-methyltransferase [Gemmatimonas aurantiaca T-27] Length = 315 Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 109/300 (36%), Positives = 170/300 (56%), Gaps = 10/300 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 HVPVLL ++ +L A +LD T G GG++ +F + G V +DRDP A++ +E + Sbjct: 16 HVPVLLSEIETML--ANATTVLDCTLGGGGHTAAFLERGVRVTGVDRDPRALAAARERLG 73 Query: 80 DYKE--QFSLFQATFSQLQD--YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 +Y+ QF A ++ L++ + D DG++ DLGVSS Q D RGF+F++ PLDM Sbjct: 74 EYERSGQFRAVLANYAALEEAGFSTDDRFDGILLDLGVSSHQFDDASRGFTFREGAPLDM 133 Query: 136 RMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM + A +++N + DL+ +L +E +A+R+A IV+RR+ PF T DL Sbjct: 134 RMGTDADLDAGELLNTIDEVDLSALLRAYADEPRAARMAREIVRRRERRPFATADDLVDA 193 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 I+ + + R FQA+RI VN+E+ L + L + L GG+L ++S+HS E Sbjct: 194 IRAVL--GPRSGAPDFARIFQAVRIAVNDELSGLERALPALRDRLTPGGVLAIISYHSGE 251 Query: 255 DRLVKKFFASRSGK-VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 DRLVK F S V R + + + +IT+K V T++++ N R+RSA+LRA Sbjct: 252 DRLVKNAFRDWSASCVCPPRQFVCTCRGRPLGDTITRKPVSATEQEIDQNTRARSARLRA 311 >gi|302849292|ref|XP_002956176.1| hypothetical protein VOLCADRAFT_97159 [Volvox carteri f. nagariensis] gi|300258479|gb|EFJ42715.1| hypothetical protein VOLCADRAFT_97159 [Volvox carteri f. nagariensis] Length = 305 Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 113/320 (35%), Positives = 163/320 (50%), Gaps = 55/320 (17%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETMR- 79 +L +V+ P V LD T GAGG++ ++ +D DP A + +R Sbjct: 1 MLNEVLDAFQPVTLNVYLDCTLGAGGHAAKIASAHPEMQMLLGIDLDPTAHVVAEPRIRA 60 Query: 80 -----DYKEQFSLFQATFSQLQDYV-----PDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 + L + + L+ + P +G++ DLG+SSMQID DRGFSF + Sbjct: 61 EAAGRSARLDVRLLRGNYRDLKRLLATVSTPSPRPNGILMDLGISSMQIDTADRGFSFMR 120 Query: 130 SGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM + +SA +V+N + +L RI+ GEEK +A IV+ R+ AP +TT Sbjct: 121 DGPLDMRMDPTAALSAEEVLNTWSEAELGRIIRDFGEEKLWKVVARRIVQAREVAPIRTT 180 Query: 189 QDLSSLIQKTVYFSKNNR------IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 Q L + +T K+ R IHPATR+FQALRI VN+E+++L + L A AL G Sbjct: 181 QQLVKAVGQTQLVGKSPRKASAKGIHPATRTFQALRIAVNDELQKLEKTLPDAIDALAPG 240 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G L V+SFHSLEDR+VK F +G+ P+ P +E++ + Sbjct: 241 GRLAVISFHSLEDRIVKHAFMRAAGR--------PT----------------PEEENLVY 276 Query: 303 ----------NRRSRSAKLR 312 N R+RSAKLR Sbjct: 277 GQDNALETEANARARSAKLR 296 >gi|300864772|ref|ZP_07109623.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Oscillatoria sp. PCC 6506] gi|300337241|emb|CBN54771.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Oscillatoria sp. PCC 6506] Length = 306 Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 115/305 (37%), Positives = 161/305 (52%), Gaps = 26/305 (8%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVS-CGQE 76 H+PVL ++I L G LDAT G GG++R +V +A+D+D A++ C Q+ Sbjct: 22 HIPVLGPQLIEGLAVRAGGHYLDATVGGGGHTRLILAAAPDVTIVAIDQDLDAIAFCKQQ 81 Query: 77 TMRDYKEQFSLFQATFSQLQDY-VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + Q Y + DG++ DLGVSS Q+D RGFSF+ LDM Sbjct: 82 LAEFLAPNSARIQFWHGNFASYPAKESTFDGIIADLGVSSAQLDAPGRGFSFRHHANLDM 141 Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM+ ++A+++VN L I GEE+ + RIA IV R PFQTT +L+ Sbjct: 142 RMNQQQSLTAAEIVNHWEEVKLADIFYTYGEERLSRRIARRIVGDR---PFQTTTELAEA 198 Query: 195 IQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 I + V + RIHPATR+FQALRI VN+E+ + L+ A + LK GG + ++SFHSL Sbjct: 199 IARCVPPKYRYGRIHPATRTFQALRIAVNSELTAVETFLKQAPQWLKPGGRMGIISFHSL 258 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 EDRL K S + + +TKK + P E+VA N R+RSAKLR Sbjct: 259 EDRLAKHELKGSS-----------------LLRVLTKKPIQPATEEVAKNPRARSAKLRL 301 Query: 314 GMRTV 318 R + Sbjct: 302 AERLI 306 >gi|60679854|ref|YP_209998.1| S-adenosyl-methyltransferase MraW [Bacteroides fragilis NCTC 9343] gi|265764988|ref|ZP_06093263.1| MraW methylase [Bacteroides sp. 2_1_16] gi|81317074|sp|Q5LIJ0|RSMH_BACFN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|60491288|emb|CAH06036.1| putative S-adenosyl-methyltransferase [Bacteroides fragilis NCTC 9343] gi|263254372|gb|EEZ25806.1| MraW methylase [Bacteroides sp. 2_1_16] Length = 304 Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 108/300 (36%), Positives = 166/300 (55%), Gaps = 16/300 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HVPVLL++ + +N +P +D TFG GG+SR G ++ D+D + Sbjct: 9 HVPVLLKESVDAMNISPDGTYVDVTFGGGGHSREILSRLGDGGRLLGFDQDE---DAERN 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYV--PDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + D F+ ++ F L +++ D G VD ++ DLGVSS D +RGFSF+ G L Sbjct: 66 IVND--PHFTFVRSNFRYLHNFLRYHDIGEVDAILADLGVSSHHFDDSERGFSFRFDGKL 123 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +GI+A+DVVN + L I + GE K + ++A IVK R +T + Sbjct: 124 DMRMNKRAGITAADVVNTYEEERLADIFYLYGELKNSRKLASVIVKARTGQKIETIGEFL 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ F + + FQALRI VN E+E L + L +A +ALK GG L+V+++HS Sbjct: 184 EIIKP--LFGREREKKELAKIFQALRIEVNQEMEALKEMLMAATEALKPGGRLVVITYHS 241 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK + + + + + P F+ + KV+VP ++++ N RSRSAKLR Sbjct: 242 LEDRMVKNIMKTGNVEGKTTQDFFGNLQTP--FRLVNNKVIVPDEDEITRNPRSRSAKLR 299 >gi|227833499|ref|YP_002835206.1| S-adenosyl-methyltransferase [Corynebacterium aurimucosum ATCC 700975] gi|262184487|ref|ZP_06043908.1| S-adenosyl-methyltransferase MraW [Corynebacterium aurimucosum ATCC 700975] gi|263446134|sp|C3PHG4|RSMH_CORA7 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|227454515|gb|ACP33268.1| S-adenosyl-methyltransferase [Corynebacterium aurimucosum ATCC 700975] Length = 347 Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 111/316 (35%), Positives = 172/316 (54%), Gaps = 24/316 (7%) Query: 20 HVPVLLEKVIALLNPA-----PGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVS 72 HVPV+ ++ LL PA VI+D T GAGG+S F +V I +DRD ++S Sbjct: 17 HVPVMRARMAQLLAPAIEAAGENAVIVDGTLGAGGHSEYFLTTFPSVRIIGVDRDSASLS 76 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD-----------KGVDGVVFDLGVSSMQIDCG 121 + + ++F A F ++ + + G+ G +FDLGVSSMQ+D Sbjct: 77 SASRRLSPFADRFVGVNARFDEVGSAIAEGESEVFSIAREHGIAGALFDLGVSSMQLDQV 136 Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 DRGF+++ PLDMRM G++A+D++N + DL RIL G+E+ A +IA A+++ R Sbjct: 137 DRGFAYKTDAPLDMRMDPRQGMTAADILNTYSHGDLARILKTYGDERFAGKIASAVLRER 196 Query: 181 QSAPFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 + PF + L L+ T+ ++ HPA R+FQALR+ VN E+E + Q + AL Sbjct: 197 EKEPFGNSARLVDLLYATIPAATRRTGGHPAKRTFQALRVEVNRELEAIEQVIPVITDAL 256 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297 GG + +S+ SLEDR+VK F S S + +P A A + +T+ +Q Sbjct: 257 SIGGRAVFMSYQSLEDRIVKHAFTKLSTSTTPAGLPMDLPGTA--AHYSVVTRGAEKASQ 314 Query: 298 EDVAFNRRSRSAKLRA 313 E++A N R+ S ++RA Sbjct: 315 EEIAENPRAASVRVRA 330 >gi|297539600|ref|YP_003675369.1| S-adenosyl-methyltransferase MraW [Methylotenera sp. 301] gi|297258947|gb|ADI30792.1| S-adenosyl-methyltransferase MraW [Methylotenera sp. 301] Length = 316 Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 118/313 (37%), Positives = 171/313 (54%), Gaps = 25/313 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQE 76 H+ VLLE+ + L V +D TFG GG+SR K+GS+ +IA DRD A+ +E Sbjct: 11 HITVLLEEAVQALAIKADGVYVDGTFGRGGHSRKILEKLGSSGRLIAFDRDLKAIESSKE 70 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +FS+ + F+ +Q + + GV DG++ DLG+SS QID RGFSF+ PL Sbjct: 71 IT---DPRFSMVHSHFAGMQAELSEMGVSKVDGILLDLGISSPQIDDASRGFSFRYDAPL 127 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA-PFQTTQDL 191 DMRM SG +A+D + + L ++ GEE+ A +IA AI+ R TT L Sbjct: 128 DMRMDQSSGQTAADFLANTTEQHLGEVIKNYGEERFAKQIARAIITERNDGRAITTTGQL 187 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ V + + +PATR+FQALRI+VN E+EEL+ + L G L V+SFH Sbjct: 188 AKVVAGAVTRFEPGQ-NPATRTFQALRIYVNQELEELSLTMPQCLALLAPQGRLAVISFH 246 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK-------KVVVPTQEDVAFNR 304 SLEDR+VK+F + R +P+N P + + K + P+ ++V N Sbjct: 247 SLEDRIVKQFIRDQEN-----RDDLPAN-FPVRAADLPQPKLKGVGKTIKPSTKEVKANP 300 Query: 305 RSRSAKLRAGMRT 317 RSRSA LR RT Sbjct: 301 RSRSAVLRVAERT 313 >gi|261337512|ref|ZP_05965396.1| S-adenosyl-methyltransferase MraW [Bifidobacterium gallicum DSM 20093] gi|270277911|gb|EFA23765.1| S-adenosyl-methyltransferase MraW [Bifidobacterium gallicum DSM 20093] Length = 356 Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 114/313 (36%), Positives = 163/313 (52%), Gaps = 13/313 (4%) Query: 13 IHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSN--VIALDRD 67 + H H PVLLE+ + L+ PA PG V++D T G G++ +F K N ++ +DRD Sbjct: 1 MDHITQIHQPVLLEQCVDLVVPALNAPGSVVVDCTLGLAGHATAFLKAAPNATLLGIDRD 60 Query: 68 PFAVSCGQETMRD--YKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGD 122 A++ + M ++F A F V G V V DLG+SS+QID + Sbjct: 61 AEALALATQRMEHEGLADRFIAVHAAFDDFGQAVDAHGLGPVQAVFMDLGLSSLQIDETE 120 Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFS+ PLDMRM + ++A ++ + L RI GEE+ A +IA IV R Sbjct: 121 RGFSYSHDAPLDMRMDTTQPLTAQTILATYDEASLARIFKDYGEERFARQIARRIVSTRN 180 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 P T+ L+ L+ + + +PA R FQALRI VN E+++L + L L Sbjct: 181 REPLTTSAQLNRLVDAVIPQAHRASGNPAKRVFQALRIEVNGELDKLRRTLPQIANRLAV 240 Query: 242 GGLLIVVSFHSLEDRLVKKFF-ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300 GG L+V S+HSLEDR VK F S V A +IP +A P F ++TK + E++ Sbjct: 241 GGRLVVESYHSLEDRTVKTFMQQGLSIDVPADMPVIPDDAQP-FFSALTKGALKADAEEI 299 Query: 301 AFNRRSRSAKLRA 313 N RS S +LRA Sbjct: 300 EHNPRSASVRLRA 312 >gi|295130325|ref|YP_003580988.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes SK137] gi|291376254|gb|ADE00109.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes SK137] gi|313764743|gb|EFS36107.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL013PA1] gi|313791793|gb|EFS39904.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL110PA1] gi|313802120|gb|EFS43352.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL110PA2] gi|313807237|gb|EFS45724.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL087PA2] gi|313809743|gb|EFS47464.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL083PA1] gi|313813215|gb|EFS50929.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL025PA1] gi|313815808|gb|EFS53522.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL059PA1] gi|313818283|gb|EFS55997.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL046PA2] gi|313820045|gb|EFS57759.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL036PA1] gi|313823146|gb|EFS60860.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL036PA2] gi|313825577|gb|EFS63291.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL063PA1] gi|313827816|gb|EFS65530.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL063PA2] gi|313838452|gb|EFS76166.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL086PA1] gi|314915234|gb|EFS79065.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL005PA4] gi|314918537|gb|EFS82368.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL050PA1] gi|314919800|gb|EFS83631.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL050PA3] gi|314925467|gb|EFS89298.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL036PA3] gi|314931815|gb|EFS95646.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL067PA1] gi|314955971|gb|EFT00369.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL027PA1] gi|314958366|gb|EFT02469.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL002PA1] gi|314960282|gb|EFT04384.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL002PA2] gi|314963091|gb|EFT07191.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL082PA1] gi|314978268|gb|EFT22362.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL072PA2] gi|314987732|gb|EFT31823.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL005PA2] gi|314990211|gb|EFT34302.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL005PA3] gi|315077555|gb|EFT49613.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL053PA2] gi|315080339|gb|EFT52315.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL078PA1] gi|315084598|gb|EFT56574.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL027PA2] gi|315085934|gb|EFT57910.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL002PA3] gi|315088648|gb|EFT60624.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL072PA1] gi|315098257|gb|EFT70233.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL059PA2] gi|315101052|gb|EFT73028.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL046PA1] gi|315108244|gb|EFT80220.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL030PA2] gi|327332217|gb|EGE73954.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL096PA3] gi|327442839|gb|EGE89493.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL013PA2] gi|327451061|gb|EGE97715.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL087PA3] gi|327452857|gb|EGE99511.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL092PA1] gi|327453584|gb|EGF00239.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL083PA2] gi|328753094|gb|EGF66710.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL087PA1] gi|328753749|gb|EGF67365.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL020PA1] gi|328759161|gb|EGF72777.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL025PA2] gi|332675167|gb|AEE71983.1| ribosomal RNA small subunit methyltransferase H [Propionibacterium acnes 266] Length = 337 Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 111/305 (36%), Positives = 167/305 (54%), Gaps = 13/305 (4%) Query: 20 HVPVLLEKVIALLN---PAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCG 74 H+PV+ +++ LL + +V +D T G GG++ + + +V + +DRD A++ Sbjct: 14 HIPVMRARILDLLAVVLKSGRRVHVDGTLGMGGHAEAVLRRFPDVELVGIDRDQQALTMA 73 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + + ++ L A +L + + D G VD V+ DLG+SS QID +RGFS+ Sbjct: 74 EARLEPFADRVHLVHAVHDELPEVLDDLGLDYVDSVLLDLGLSSFQIDEVERGFSYSVDS 133 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM SG +A+ ++N+++ L R+L GEEK A RI AIV R P +T+ Sbjct: 134 PLDMRMDQSSGRTAAQILNESDPGALVRMLREYGEEKFADRIVRAIVTERDRQPIETSGR 193 Query: 191 LSSLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L +I + + + HPA R+FQALRI VN E+E L L A L GG + V+ Sbjct: 194 LVEIITEAIPATVRRKRHSHPAKRTFQALRIAVNREMETLPAVLPRALDRLDVGGRIAVL 253 Query: 249 SFHSLEDRLVKKFFASRSGKVM-AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 S+HSLEDR VK+ F A M+P + A F +T+ P ++VA N RS Sbjct: 254 SYHSLEDRPVKEAFRDACADTAPAGLPMVPESM-AAKFNPVTRGAERPDADEVATNPRSA 312 Query: 308 SAKLR 312 SA+LR Sbjct: 313 SARLR 317 >gi|332362961|gb|EGJ40750.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus sanguinis SK49] Length = 316 Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 106/309 (34%), Positives = 176/309 (56%), Gaps = 14/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGS--NVIALDRDPFAVSCGQE 76 H+ VLL + + L P + +DAT G G+S ++G ++ A D+D A+ ++ Sbjct: 7 HITVLLHETVDQLAVKPDGIYVDATLGGAGHSEYLLSQLGDEGHLYAFDQDQTAIDNAKK 66 Query: 77 TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y E+ + + F L+ + + GV DG+ +DLGVSS Q+D +RGFS+++ Sbjct: 67 RLAPYIERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQRERGFSYKQDA 126 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+C + ++A +VVN + +DL RI GE+K + +IA I + R P +TT + Sbjct: 127 PLDMRMNCDAALTAFEVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQARSVKPIETTTE 186 Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ +I K+ +K + HPA + FQA+RI VN+E+ + ++ A L G + V+ Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDLLAVDGRIAVI 245 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F S V IP P + + +++K ++P++E++ N R+ Sbjct: 246 TFHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKL-ELVSRKPILPSKEELESNNRAH 304 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 305 SAKLRVARK 313 >gi|257061938|ref|YP_003139826.1| S-adenosyl-methyltransferase MraW [Cyanothece sp. PCC 8802] gi|256592104|gb|ACV02991.1| S-adenosyl-methyltransferase MraW [Cyanothece sp. PCC 8802] Length = 304 Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 119/306 (38%), Positives = 172/306 (56%), Gaps = 31/306 (10%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 H+ VL +++IA LN PG LDAT G+GG+SR +V A+DRD A++ Sbjct: 22 HISVLSQEMIAGLNIIPGGHYLDATVGSGGHSRLILATFPDVRITAIDRDSQAIAAAASN 81 Query: 78 MRDY-KEQFSLFQATFSQLQDYVPDKGVD--GVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + + ++ +Q F+ DY P K + G++ DLGVSS Q D +RGFSF+ G LD Sbjct: 82 LAELGSDRLKFWQGNFA---DY-PGKIAEFSGIIADLGVSSPQFDFPERGFSFRHEGALD 137 Query: 135 MRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM ++A +++NQ + L + GEE+++ +A IV++R PF+TT L+ Sbjct: 138 MRMDQTQSLTAGEIINQWSETALADLFYQYGEERRSRSMAKHIVQQR---PFKTTTQLAE 194 Query: 194 LIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 I +TV + RIHPATR FQALRI VN E+ L + L A + L+ GG + ++SFHS Sbjct: 195 AIAQTVPPKYRYGRIHPATRVFQALRIAVNEELSSLERFLDRAPQWLQPGGRIGIISFHS 254 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK F R + V +TKK ++P +E+ N RSRSAKLR Sbjct: 255 LEDRIVKYRF--RDSCWLTV---------------MTKKPIIPQREEQLKNPRSRSAKLR 297 Query: 313 AGMRTV 318 R + Sbjct: 298 LAERNL 303 >gi|262282191|ref|ZP_06059960.1| S-adenosyl-methyltransferase MraW [Streptococcus sp. 2_1_36FAA] gi|262262645|gb|EEY81342.1| S-adenosyl-methyltransferase MraW [Streptococcus sp. 2_1_36FAA] Length = 316 Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 112/310 (36%), Positives = 171/310 (55%), Gaps = 14/310 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 HV VLL + I L+ P V +DAT G G+S S ++ A D+D A+ ++ Sbjct: 7 HVTVLLHETIDYLDVKPDGVYVDATLGGAGHSEYLLSKLSPKGHLYAFDQDATAIEHAKK 66 Query: 77 TMRDYKEQ--FSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y E+ + Q F L+ + GVD G+ +DLGVSS Q+D +RGFS+++ Sbjct: 67 RLAPYIEKGMVTFVQDNFRHLKLQLKKLGVDEIDGICYDLGVSSPQLDERERGFSYKQDA 126 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ + SA VVN + DL RI GE+K + +IA I + RQ P +TT + Sbjct: 127 PLDMRMNRHADFSAYQVVNDYDYHDLVRIFFKYGEDKFSKQIARKIEQARQIKPIETTTE 186 Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ +I K+ +K + HPA + FQA+RI VN+E+ + ++ A L G + V+ Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDMLAVDGRISVI 245 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F S V IP + P + + I++K ++P+ E++ N R+ Sbjct: 246 TFHSLEDRLTKQLFKEASTVDVPKGLPFIPDDLKPKL-ELISRKPILPSAEELELNNRAH 304 Query: 308 SAKLRAGMRT 317 SAKLR + Sbjct: 305 SAKLRVAKKV 314 >gi|153809802|ref|ZP_01962470.1| hypothetical protein RUMOBE_00183 [Ruminococcus obeum ATCC 29174] gi|149833980|gb|EDM89060.1| hypothetical protein RUMOBE_00183 [Ruminococcus obeum ATCC 29174] Length = 313 Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 103/302 (34%), Positives = 167/302 (55%), Gaps = 9/302 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H VLLE+ I L P +D T G G+++ C+ S I +D+D A+ E Sbjct: 5 HKSVLLEETIDGLRVKPDGTYVDGTLGGAGHAQEVCRRLSAKGRFIGIDQDQDAIVAASE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + Y ++ + ++ + + + + + G VDG+V DLGVSS Q+D +RGF+++ PL Sbjct: 65 RLSAYGDRVQIIRSNYCYMANELKNLGIQKVDGIVLDLGVSSYQLDNEERGFTYRVDAPL 124 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM +A+D+VN + ++L RI+ GE+K A IA IV R AP QTT +L+ Sbjct: 125 DMRMDQRQSRTAADIVNGYDERELYRIIRDYGEDKFAKNIAKHIVAARAKAPIQTTGELT 184 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I++++ + HPA R+FQA+RI +N E++ L + L L GG + +++FH Sbjct: 185 EIIRQSIPMKIQATGGHPAKRTFQAIRIELNRELDVLRESLDGMIDLLDDGGRICIITFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK F + + + IT+K ++P++ ++ N RS+SAK Sbjct: 245 SLEDRIVKTIFRKNENPCTCPPDFPVCVCGKKSKGKVITRKPILPSETEMEENPRSKSAK 304 Query: 311 LR 312 LR Sbjct: 305 LR 306 >gi|225574511|ref|ZP_03783121.1| hypothetical protein RUMHYD_02588 [Blautia hydrogenotrophica DSM 10507] gi|225038298|gb|EEG48544.1| hypothetical protein RUMHYD_02588 [Blautia hydrogenotrophica DSM 10507] Length = 336 Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 106/312 (33%), Positives = 170/312 (54%), Gaps = 19/312 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H VLLE+ I L P + +D T G G++ CK S I +D+D A+ E Sbjct: 27 HKSVLLEETIDGLRVKPDGIYVDGTLGGAGHAVEVCKKLSAKGRFIGIDQDQDAIIAANE 86 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +RD+ ++ ++ ++ + + ++G VDG++ DLGVSS Q+D +RGF+++ PL Sbjct: 87 RLRDFGDRITIIRSNYCYAVKELRERGIQQVDGILLDLGVSSYQLDNPERGFTYRVDAPL 146 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + +A D+VN ++L RI+ GE+K A IA IV R P +TT +L+ Sbjct: 147 DMRMDQRASQTAGDIVNGYEERELYRIIRDYGEDKFAKNIAKHIVMERARKPIETTGELT 206 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I++ + + HPA R+FQA+RI +N+E++ L L L G + +++FH Sbjct: 207 EVIRRAIPMKMQAAGGHPAKRTFQAIRIELNHELDVLRDSLDEMVDILSDRGRICIITFH 266 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF------QSITKKVVVPTQEDVAFNRR 305 SLEDR+VK F PSN V + IT+K ++P+++++ N R Sbjct: 267 SLEDRIVKTIFRKNENPCTC-----PSNFPVCVCGKKSKGKVITRKPILPSEDEMEENPR 321 Query: 306 SRSAKLRAGMRT 317 ++SAKLR RT Sbjct: 322 AKSAKLRIFERT 333 >gi|183602416|ref|ZP_02963782.1| S-adenosyl-methyltransferase [Bifidobacterium animalis subsp. lactis HN019] gi|219683269|ref|YP_002469652.1| S-adenosyl-methyltransferase MraW [Bifidobacterium animalis subsp. lactis AD011] gi|241191230|ref|YP_002968624.1| S-adenosyl-methyltransferase MraW [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196636|ref|YP_002970191.1| S-adenosyl-methyltransferase MraW [Bifidobacterium animalis subsp. lactis DSM 10140] gi|263445932|sp|C6A8W4|RSMH_BIFLB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263445940|sp|C6AJH2|RSMH_BIFAS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263447580|sp|B8DSU7|RSMH_BIFA0 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|183218335|gb|EDT88980.1| S-adenosyl-methyltransferase [Bifidobacterium animalis subsp. lactis HN019] gi|219620919|gb|ACL29076.1| S-adenosyl-methyltransferase MraW [Bifidobacterium animalis subsp. lactis AD011] gi|240249622|gb|ACS46562.1| S-adenosyl-methyltransferase [Bifidobacterium animalis subsp. lactis Bl-04] gi|240251190|gb|ACS48129.1| S-adenosyl-methyltransferase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|289177346|gb|ADC84592.1| MraW [Bifidobacterium animalis subsp. lactis BB-12] gi|295794223|gb|ADG33758.1| S-adenosyl-methyltransferase [Bifidobacterium animalis subsp. lactis V9] Length = 353 Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 116/309 (37%), Positives = 172/309 (55%), Gaps = 19/309 (6%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCG 74 H PVLL++ + L+ PA V +D T G G++ +F K N VI +DRD A+ Sbjct: 8 HKPVLLQECVDLVTPALHASDSVAVDCTLGLAGHTIAFLKAAPNATVIGIDRDEEALD-- 65 Query: 75 QETMRDYKE----QFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSF 127 + T R +E +F A F Q + + +GV V DLG+SS+QID +RGFS+ Sbjct: 66 KATARIAQEGLSARFVPVHAAFDQFDEVLRAQGVSRVQAVFMDLGLSSLQIDERERGFSY 125 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 PLDMRM S ++A +++ + L I GEE+ + IA IV++RQS+P + Sbjct: 126 AHDAPLDMRMDTSQALTAREILATYDADRLAHIFKEYGEERFSKPIAKRIVQQRQSSPLE 185 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T+ L++L+ + ++ +PA R FQALRI VN E+++L + L L GG L+ Sbjct: 186 TSSQLTALVDAVIPAARRGSGNPAKRVFQALRIEVNGELDKLRRTLPQIGLHLAVGGRLV 245 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 V S+HSLEDR VK F A + +V A M IP + P F+++TK V ++A+N Sbjct: 246 VESYHSLEDRTVKNFMA-QGLRVDAPADMPVIPPDMQP-FFKALTKGAVKADAGEIAYNP 303 Query: 305 RSRSAKLRA 313 RS S +LRA Sbjct: 304 RSASVRLRA 312 >gi|50842237|ref|YP_055464.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes KPA171202] gi|54036174|sp|Q6A9R0|RSMH_PROAC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|50839839|gb|AAT82506.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes KPA171202] gi|315107070|gb|EFT79046.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL030PA1] Length = 337 Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 111/305 (36%), Positives = 167/305 (54%), Gaps = 13/305 (4%) Query: 20 HVPVLLEKVIALLN---PAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCG 74 H+PV+ +++ LL + +V +D T G GG++ + + +V + +DRD A++ Sbjct: 14 HIPVMRARILDLLAVVLKSGRRVHVDGTLGMGGHAEAVLRRFPDVELVGIDRDQQALTMA 73 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + + ++ L A +L + + D G VD V+ DLG+SS QID +RGFS+ Sbjct: 74 EARLEPFADRVHLVHAVHDELPEVLDDLGLDYVDSVLLDLGLSSFQIDEVERGFSYSVDS 133 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM SG +A+ ++N+++ L R+L GEEK A RI AIV R P +T+ Sbjct: 134 PLDMRMDQSSGRTAAQILNESDPGALVRMLREYGEEKFADRIVRAIVTERDRQPIETSGR 193 Query: 191 LSSLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L +I + + + HPA R+FQALRI VN E+E L L A L GG + V+ Sbjct: 194 LVEIITEAIPATVRRKRHSHPAKRTFQALRIAVNREMETLPAVLPRALDRLDVGGRIAVL 253 Query: 249 SFHSLEDRLVKKFFASRSGKVM-AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 S+HSLEDR VK+ F A M+P + A F +T+ P ++VA N RS Sbjct: 254 SYHSLEDRPVKEAFRDACADTAPAGLPMVPESMA-AKFNPVTRGAERPDADEVATNPRSA 312 Query: 308 SAKLR 312 SA+LR Sbjct: 313 SARLR 317 >gi|262831458|sp|Q1J5F8|RSMH_STRPF RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 316 Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 107/308 (34%), Positives = 172/308 (55%), Gaps = 12/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 HV VLL + + +L+ P + +DAT G G+S S ++ D+D A+ Q Sbjct: 7 HVTVLLHETVDMLDIKPNGIYVDATLGGSGHSAYLLSKLSEQGHLYCFDQDQKAIDNAQV 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSG 131 T++ Y K Q + + F L+ + GVD G+++DLGVSS Q+D +RGFS+++ Sbjct: 67 TLKSYIDKGQVTFIKDNFRHLKARLTALGVDEIDGILYDLGVSSPQLDERERGFSYKQDA 126 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S ++A +VVN DL +I GE+K + +IA I + R P +TT + Sbjct: 127 PLDMRMDRQSLLTAYEVVNTYPFNDLVKIFFKYGEDKFSKQIARKIEQARAIKPIETTTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ LI+ + + HPA + FQA+RI VN+E+ + ++ A + L G + V++ Sbjct: 187 LAELIKAAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQDAMELLALDGRISVIT 246 Query: 250 FHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDRL K+ F S V +IP + P F+ +++K ++P+ ++ N+R+ S Sbjct: 247 FHSLEDRLTKQLFKEASTVDVPKGLPLIPEDMKP-TFELVSRKPILPSHSELTANKRAHS 305 Query: 309 AKLRAGMR 316 AKLR + Sbjct: 306 AKLRVAKK 313 >gi|2149901|gb|AAC45631.1| unknown [Enterococcus faecalis] Length = 319 Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 109/316 (34%), Positives = 173/316 (54%), Gaps = 19/316 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VLL++ + L P V +D TFG G+S ++ A D+D A++ + Sbjct: 8 HYTVLLKETVDGLQVKPDGVYVDCTFGGAGHSEYLLTQLNEHGHLYAFDQDQKALAHAKT 67 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++ Y K Q + ++ F +++ + + GV DG+++DLGVSS Q+D +RGFS+ + Sbjct: 68 RLQKYVDKGQVTFIKSNFRNIKEELAEHGVFHVDGILYDLGVSSPQLDEAERGFSYHQDA 127 Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM ++A +VVN + +L +I GEEK + +IA I + R+ P +TT + Sbjct: 128 PLDMRMDQDAPLTAREVVNTYSYSELVKIFFRYGEEKFSKQIAREIERVREKQPIETTGE 187 Query: 191 LSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I+ + ++ HPA R FQA+RI VN+E+ + + L A L G + V++ Sbjct: 188 LVEIIKTAIPAPARRKGGHPAKRIFQAIRIAVNDELGAVEESLEQAIDLLAKNGRISVIT 247 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPS-NAHPAVFQS----ITKKVVVPTQEDVAFNR 304 FHSLEDR+VK F S V+ + P P FQ IT+K ++P+ +++ N Sbjct: 248 FHSLEDRIVKTMFKEYS----TVQDLPPGIPVVPEEFQPELKVITRKPILPSDSELSENN 303 Query: 305 RSRSAKLRAGMRTVER 320 RSRSAKLR + R Sbjct: 304 RSRSAKLRIAEKIKSR 319 >gi|116329171|ref|YP_798891.1| S-adenosylmethionine-dependentmethyltransferase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|122283047|sp|Q04Y87|RSMH_LEPBL RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|116121915|gb|ABJ79958.1| S-adenosylmethionine-dependentmethyltransferase [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 316 Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 109/289 (37%), Positives = 162/289 (56%), Gaps = 25/289 (8%) Query: 39 VILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ 96 + LD T G GG+S F K S VI DRDP +S + D+KE+ Q FS++ Sbjct: 28 LFLDGTAGEGGHSLLFLKGFPNSKVILCDRDPVMLSRALARLVDFKERVVSIQTNFSEID 87 Query: 97 -DYVPDKGVD----GVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQ 150 + + G++ G++ DLG+S+ + RGFSF+++ PLDMR++ + GI+A DV+N Sbjct: 88 SNLLSSHGINDSPQGILLDLGISTFHLFHSGRGFSFKEAEPLDMRLTPNIGINAEDVINT 147 Query: 151 ANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV--YFSKNNRIH 208 + L I GEE+ + +IA IV+RR+ T +L+ LI K + R H Sbjct: 148 YSKDRLMHIFYTYGEERWSKKIAEVIVERRKQNLISYTSELADLISKIIPRKLWPPGR-H 206 Query: 209 PATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGK 268 PATR FQALRI VN E+ + +GL S L+ G++ V+SFHSLEDR+VK Sbjct: 207 PATRIFQALRIEVNQELTHIEKGLDSLLNLLRPEGVIQVISFHSLEDRIVKN-------- 258 Query: 269 VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 ++R+ N F+ +TKK ++P++E+ N SRSAKLR +T Sbjct: 259 --SLRNYAKQNG----FELLTKKPILPSEEETKENPASRSAKLRVLRKT 301 >gi|282850409|ref|ZP_06259788.1| S-adenosyl-methyltransferase MraW [Veillonella parvula ATCC 17745] gi|282579902|gb|EFB85306.1| S-adenosyl-methyltransferase MraW [Veillonella parvula ATCC 17745] Length = 310 Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 106/307 (34%), Positives = 168/307 (54%), Gaps = 10/307 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 +H VLL + + + P + +D T G G++ + +M +I LD+D A+S + Sbjct: 4 NHTSVLLRETVDSVVTNPKGIYVDCTLGGAGHAHAVGEMLDPEGMIIGLDQDEDALSVAR 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + D K Q FS L++ + + G VDG +FDLGVSS Q+D +RGFS+ GP Sbjct: 64 QRLSDLKCQVLTIPTNFSNLKEALQNAGIYEVDGFIFDLGVSSYQLDTPERGFSYMNDGP 123 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM ++A ++VN+ + + L +I+ GEE+ A RI IV+ RQ TT +L Sbjct: 124 LDMRMDKDAPLTAEEIVNEYDSEQLLQIIRDYGEERWAKRIVEFIVEARQEKRITTTGEL 183 Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+ + ++ + HPA R+FQA+RI VN E+ L A LK G + V++F Sbjct: 184 VRIIKNAIPAKARQDGPHPAKRTFQAIRIEVNRELAILHDSFVDAVSMLKPKGKIGVITF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+ K+ F S + + + H AV ++ K + P+ ++ N R+RSA Sbjct: 244 HSLEDRITKQTFKELSTACICPPQLPVCVCNHKAVVKA-KNKAIEPSIGEIEVNPRARSA 302 Query: 310 KLRAGMR 316 KLR ++ Sbjct: 303 KLRVAVK 309 >gi|294793912|ref|ZP_06759049.1| S-adenosyl-methyltransferase MraW [Veillonella sp. 3_1_44] gi|294455482|gb|EFG23854.1| S-adenosyl-methyltransferase MraW [Veillonella sp. 3_1_44] Length = 311 Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 106/307 (34%), Positives = 168/307 (54%), Gaps = 10/307 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 +H VLL + + + P + +D T G G++ + +M +I LD+D A+S + Sbjct: 5 NHTSVLLRETVDSVVTNPKGIYVDCTLGGAGHAHAVGEMLDPEGMIIGLDQDEDALSVAR 64 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + D K Q FS L++ + + G VDG +FDLGVSS Q+D +RGFS+ GP Sbjct: 65 QRLSDLKCQVLTIPTNFSNLKEALQNAGIYEVDGFIFDLGVSSYQLDTPERGFSYMNDGP 124 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM ++A ++VN+ + + L +I+ GEE+ A RI IV+ RQ TT +L Sbjct: 125 LDMRMDKDAPLTAEEIVNEYDSEQLLQIIRDYGEERWAKRIVEFIVEARQEKRITTTGEL 184 Query: 192 SSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+ + ++ + HPA R+FQA+RI VN E+ L A LK G + V++F Sbjct: 185 VRIIKNAIPAKARQDGPHPAKRTFQAIRIEVNRELAILHDSFVDAVSMLKPKGKIGVITF 244 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+ K+ F S + + + H AV ++ K + P+ ++ N R+RSA Sbjct: 245 HSLEDRITKQTFKELSTACICPPQLPVCVCNHKAVVKA-KNKAIEPSIGEIEVNPRARSA 303 Query: 310 KLRAGMR 316 KLR ++ Sbjct: 304 KLRVAVK 310 >gi|157151600|ref|YP_001449889.1| S-adenosyl-methyltransferase MraW [Streptococcus gordonii str. Challis substr. CH1] gi|262826721|sp|A8AVS9|RSMH_STRGC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|157076394|gb|ABV11077.1| S-adenosyl-methyltransferase MraW [Streptococcus gordonii str. Challis substr. CH1] Length = 316 Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 112/310 (36%), Positives = 171/310 (55%), Gaps = 14/310 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 HV VLL + I L+ P V +DAT G G+S S ++ A D+D A+ ++ Sbjct: 7 HVTVLLHETIDYLDVKPDGVYVDATLGGAGHSEYLLSKLSPKGHLYAFDQDATAIEHAKK 66 Query: 77 TMRDYKEQ--FSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y E+ + Q F L+ + GVD G+ +DLGVSS Q+D +RGFS+++ Sbjct: 67 RLAPYIEKGMVTFVQDNFRHLKLQLEKLGVDEIDGICYDLGVSSPQLDERERGFSYKQDA 126 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ + SA VVN + DL RI GE+K + +IA I + RQ P +TT + Sbjct: 127 PLDMRMNRHADFSAYQVVNDYDYHDLVRIFFKYGEDKFSKQIARKIEQARQIKPIETTTE 186 Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ +I K+ +K + HPA + FQA+RI VN+E+ + ++ A L G + V+ Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDLLAVDGRISVI 245 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F S V IP + P + + I++K ++P+ E++ N R+ Sbjct: 246 TFHSLEDRLTKQLFKEASTVDVPKGLPFIPDDLKPKL-ELISRKPILPSAEELELNNRAH 304 Query: 308 SAKLRAGMRT 317 SAKLR + Sbjct: 305 SAKLRVAKKV 314 >gi|116330221|ref|YP_799939.1| S-adenosylmethionine-dependentmethyltransferase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|122282016|sp|Q04V89|RSMH_LEPBJ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|116123910|gb|ABJ75181.1| S-adenosylmethionine-dependentmethyltransferase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 316 Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 109/289 (37%), Positives = 162/289 (56%), Gaps = 25/289 (8%) Query: 39 VILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ 96 + LD T G GG+S F K S VI DRDP +S + D+KE+ Q FS++ Sbjct: 28 LFLDGTAGEGGHSLLFLKGFPNSKVILCDRDPVMLSRALARLVDFKERVVSIQTNFSEID 87 Query: 97 -DYVPDKGVD----GVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQ 150 + + G++ G++ DLG+S+ + RGFSF+++ PLDMR++ + GI+A DV+N Sbjct: 88 SNLLSSHGINDSPQGILLDLGISTFHLFHSGRGFSFKEAEPLDMRLTPNIGINAEDVINT 147 Query: 151 ANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV--YFSKNNRIH 208 + L I GEE+ + +IA IV+RR+ T +L+ LI K + R H Sbjct: 148 YSKDRLMHIFYTYGEERWSKKIAEVIVERRKQNLISYTSELADLISKIIPRKLWPPGR-H 206 Query: 209 PATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGK 268 PATR FQALRI VN E+ + +GL S L+ G++ V+SFHSLEDR+VK Sbjct: 207 PATRIFQALRIEVNQELTHIEKGLDSLLNLLRPEGVIQVISFHSLEDRIVKN-------- 258 Query: 269 VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 ++R+ N F+ +TKK ++P++E+ N SRSAKLR +T Sbjct: 259 --SLRNYAKQNG----FELLTKKPILPSEEETKENPASRSAKLRVLRKT 301 >gi|312131313|ref|YP_003998653.1| s-adenosyl-methyltransferase mraw [Leadbetterella byssophila DSM 17132] gi|311907859|gb|ADQ18300.1| S-adenosyl-methyltransferase MraW [Leadbetterella byssophila DSM 17132] Length = 301 Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 112/301 (37%), Positives = 166/301 (55%), Gaps = 19/301 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77 H PV+L + + LN P + +D TFG GG+SR K ++ D+D ++ Sbjct: 6 HKPVMLTECLQGLNIRPDGIYVDVTFGGGGHSREILKHLTTGHLYGFDQD---ADAQEQA 62 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + F+ +A F ++ Y+ GV DG++ DLG+SS QID +RGFS + G LD Sbjct: 63 SKISSPNFTFIRANFRNIRKYLKIYGVSKVDGILADLGISSHQIDTPERGFSTRFDGELD 122 Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM+ S GISA +VVN+ +L +I G+ GE K A +A AI + + T QDL Sbjct: 123 MRMNTSTGISAKEVVNEYAEDELHKIFGMYGELKNARSVARAIALEKGN--IHTVQDLKD 180 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 ++ K N+ + + FQALRI VN E++ L + L + L GG L+V+S+HSL Sbjct: 181 TLKHLAPRGKENKFY--AQVFQALRIEVNEELKVLEEFLLQVPEVLAPGGRLVVMSYHSL 238 Query: 254 EDRLVKKFFASRSGKVMA--VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 EDR VK F RSGK + + + P Q++T+K V ++ ++A N R+RSAKL Sbjct: 239 EDRPVKNFI--RSGKFYGEVEKDLFGNEIKP--LQAVTRKAVEASEAEIAENPRARSAKL 294 Query: 312 R 312 R Sbjct: 295 R 295 >gi|237724902|ref|ZP_04555383.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. D4] gi|265754710|ref|ZP_06089762.1| methylase MraW [Bacteroides sp. 3_1_33FAA] gi|229436640|gb|EEO46717.1| S-adenosyl-methyltransferase MraW [Bacteroides dorei 5_1_36/D4] gi|263234824|gb|EEZ20392.1| methylase MraW [Bacteroides sp. 3_1_33FAA] Length = 304 Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 112/300 (37%), Positives = 167/300 (55%), Gaps = 16/300 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76 HVPVLL + + +N PG + +DATFG GG+S+ S +++ + D+D + Sbjct: 9 HVPVLLNESVDGMNIQPGGIYVDATFGGGGHSKEILSRLDSTAHLYSFDQDE---DAEKN 65 Query: 77 TMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + D +F+ ++ F L + Y + VD ++ DLGVSS D +RGFSF+ G L Sbjct: 66 IVSD--SRFTFVRSNFRYLSNFLRYYDVEEVDAILADLGVSSHHFDDSERGFSFRFEGKL 123 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +GI+A+DVVN + + L I + GE K + ++A IVK R T D Sbjct: 124 DMRMNKRAGITAADVVNTYDEERLANIFYLYGELKNSRKLASTIVKARGVKQIVTIGDFL 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ F + + FQALRI VN E+E L + L +A KALK GG L+V+++HS Sbjct: 184 EVIKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLYAATKALKPGGRLVVITYHS 241 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK + + + A + + P F+ + KV+V E+V N RSRSAKLR Sbjct: 242 LEDRMVKNIMKTGNIEGKAEQDFFGNVQTP--FKLVNSKVIVAGNEEVTCNPRSRSAKLR 299 >gi|262373648|ref|ZP_06066926.1| MraW methylase [Acinetobacter junii SH205] gi|262311401|gb|EEY92487.1| MraW methylase [Acinetobacter junii SH205] Length = 306 Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 117/307 (38%), Positives = 170/307 (55%), Gaps = 18/307 (5%) Query: 20 HVPVLL-EKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQ 75 H+ VLL E V +L + +DATFG GG+++ S + V A D+DP A+ Sbjct: 3 HISVLLHETVDGVLAGRDTGIYVDATFGRGGHTKLLLSKLDQNARVYAFDKDPQALEVAA 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + +F + A+F+ LQ + + G VDGV+ DLGVSS Q+D +RGFSF ++GP Sbjct: 63 Q-LEQEDPRFKIIHASFADLQSELANIGITEVDGVMADLGVSSPQLDQAERGFSFMQNGP 121 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G +A++ + + + L I+ GEE+ + RIA AI +Q+ TT L Sbjct: 122 LDMRMDNSKGPTAAEWLLEIEEEKLANIIYQYGEERYSRRIAKAI---KQAGELTTTAQL 178 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + L+ KT + HPATR+FQA+RI +N E+E++ L A + LK G L V+SFH Sbjct: 179 AELV-KTAHPKWEKHKHPATRTFQAIRIAINRELEDIEIFLPQAVELLKPKGQLAVISFH 237 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV--VVPTQEDVAFNRRSRSA 309 SLEDRL+K+F S +P + KKV + ++ +V N RSRSA Sbjct: 238 SLEDRLIKQFIQKESTLAEDTGWGMP---QAQIDTRRLKKVSRIRASEAEVKANPRSRSA 294 Query: 310 KLRAGMR 316 LR R Sbjct: 295 WLRVAER 301 >gi|314968074|gb|EFT12173.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL037PA1] Length = 337 Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 111/305 (36%), Positives = 167/305 (54%), Gaps = 13/305 (4%) Query: 20 HVPVLLEKVIALLN---PAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCG 74 H+PV+ +++ LL + +V +D T G GG++ + + +V + +DRD A++ Sbjct: 14 HIPVMRARILDLLAVVLKSGRRVHVDGTLGMGGHAEAVLRRFPDVELVGIDRDQQALTMA 73 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + + ++ L A +L + + D G VD V+ DLG+SS QID +RGFS+ Sbjct: 74 EARLEPFADRVHLVHAVHDELLEVLDDLGLDYVDSVLLDLGLSSFQIDEVERGFSYSVDS 133 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM SG +A+ ++N+++ L R+L GEEK A RI AIV R P +T+ Sbjct: 134 PLDMRMDQSSGRTAAQILNESDPGALVRMLREYGEEKFADRIVRAIVTERDRQPIETSGR 193 Query: 191 LSSLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L +I + + + HPA R+FQALRI VN E+E L L A L GG + V+ Sbjct: 194 LVEIITEAIPATVRRKRHSHPAKRTFQALRIAVNREMETLPAVLPRALDRLDVGGRIAVL 253 Query: 249 SFHSLEDRLVKKFFASRSGKVM-AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 S+HSLEDR VK+ F A M+P + A F +T+ P ++VA N RS Sbjct: 254 SYHSLEDRPVKEAFRDACADTAPAGLPMVPESM-AAKFNPVTRGAERPDADEVATNPRSA 312 Query: 308 SAKLR 312 SA+LR Sbjct: 313 SARLR 317 >gi|294792047|ref|ZP_06757195.1| S-adenosyl-methyltransferase MraW [Veillonella sp. 6_1_27] gi|294457277|gb|EFG25639.1| S-adenosyl-methyltransferase MraW [Veillonella sp. 6_1_27] Length = 311 Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 106/307 (34%), Positives = 168/307 (54%), Gaps = 10/307 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 +H VLL + + + P + +D T G G++ + ++ +I LD+D A+S + Sbjct: 5 NHTSVLLRETVDSVVTNPKGIYVDCTLGGAGHAHAVGEILDPEGMIIGLDQDEDALSVAR 64 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + D K Q FS L+D + + G VDG +FDLGVSS Q+D +RGFS+ GP Sbjct: 65 QRLSDLKCQVLTIPTNFSNLKDALQNAGIYEVDGFIFDLGVSSYQLDTPERGFSYMNDGP 124 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM ++A ++VN+ + + L +I+ GEE+ A RI IV+ RQ TT +L Sbjct: 125 LDMRMDKDAPLTAEEIVNEYDSEQLLQIIRDYGEERWAKRIVEFIVEARQEKRITTTGEL 184 Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+ + ++ + HPA R+FQA+RI VN E+ L A LK G + V++F Sbjct: 185 VRIIKNAIPAKARQDGPHPAKRTFQAIRIEVNRELAILHDSFVDAVSMLKPKGKIGVITF 244 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+ K+ F S + + + H AV ++ K + P+ ++ N R+RSA Sbjct: 245 HSLEDRITKQTFKELSTACICPPQLPVCVCNHKAVVKA-KNKAIEPSIGEIEVNPRARSA 303 Query: 310 KLRAGMR 316 KLR ++ Sbjct: 304 KLRVAVK 310 >gi|293192321|ref|ZP_06609432.1| S-adenosyl-methyltransferase MraW [Actinomyces odontolyticus F0309] gi|292820236|gb|EFF79230.1| S-adenosyl-methyltransferase MraW [Actinomyces odontolyticus F0309] Length = 335 Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 117/309 (37%), Positives = 173/309 (55%), Gaps = 18/309 (5%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74 HVPVLL + + +L PA PG V++D T G GG++ + G VI +DRDP A+ Sbjct: 19 HVPVLLRECLDMLAPAIKRPGAVLVDGTLGMGGHTEGALERFEGLTVIGIDRDPQAIELA 78 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRGFSFQK 129 + + +F T+ + V ++ VDGV+ DLGVSS+Q+D DRGF++ K Sbjct: 79 SARLERFGTRFRAVHTTYDNIDVAVEEQLGTGARVDGVLMDLGVSSLQLDEADRGFAYSK 138 Query: 130 SGPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM + SG SA+D++ ++ +L RIL GEEK A RIA I++RR AP T Sbjct: 139 DAPLDMRMDATSGQSAADLLATSSEGELIRILRTYGEEKFAPRIARLIIRRRDDAPITRT 198 Query: 189 QDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L +I++ + ++ +PA R+FQALR+ VN+E+ L + L A +L+ GG L+V Sbjct: 199 GELVDIIREAIPAPARRTGGNPAKRTFQALRVAVNDELTILERALPRALSSLRVGGRLVV 258 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVR---HMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 S+ SLEDR+VK R G A ++P P+ + +TK Q + N Sbjct: 259 ESYQSLEDRIVKDVL--RCGSTSAAPPGLPVVPDEMAPS-LRLLTKGANKADQAEQDHNP 315 Query: 305 RSRSAKLRA 313 RS S +LR Sbjct: 316 RSASVRLRG 324 >gi|194337867|ref|YP_002019661.1| S-adenosyl-methyltransferase MraW [Pelodictyon phaeoclathratiforme BU-1] gi|262824772|sp|B4SHF1|RSMH_PELPB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|194310344|gb|ACF45044.1| S-adenosyl-methyltransferase MraW [Pelodictyon phaeoclathratiforme BU-1] Length = 332 Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 110/316 (34%), Positives = 175/316 (55%), Gaps = 29/316 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--------GSNVIALDRDPFAV 71 H PVL+ +V+A L PG + +D T G GG+S + + GS +I +D+D A+ Sbjct: 9 HEPVLVNEVVAFLVRKPG-IYVDGTLGGGGHSSAMLRALFDAGFLAGSLLIGIDQDDAAL 67 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVP----DKGVD----GVVFDLGVSSMQIDCGDR 123 ET++++ L + F + + +KG++ G++ DLGVSS QI+ DR Sbjct: 68 RVAGETLKEFAASTVLVKGNFCDMGGLIASICAEKGLEPKVMGILLDLGVSSFQINTPDR 127 Query: 124 GFSFQKSGPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GFS+ + GPLDMRM S + SA+D+VN + ++L R+ GEE ++ IA AIV RQ Sbjct: 128 GFSYLREGPLDMRMDSNASRSAADIVNGYDEQELARLFYRYGEEPRSRSIARAIVAYRQK 187 Query: 183 -APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 TQ+L+++I+ + I +R FQALRI VN E++ L Q L L Sbjct: 188 HGAVTYTQELAAIIRGNAH-GGEKVIKTLSRVFQALRIEVNAELDVLRQALYDGIDCLDE 246 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRS-----GKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296 G + ++S+HSLEDR+VK+ FA ++ K + +R + + +T+K ++ Sbjct: 247 TGRMAIISYHSLEDRIVKRVFAEKARSDWGPKGVGLREPLSWGS----VAPVTRKPLIAA 302 Query: 297 QEDVAFNRRSRSAKLR 312 +++A N R+RSAKLR Sbjct: 303 PDEIALNSRARSAKLR 318 >gi|228474969|ref|ZP_04059697.1| S-adenosyl-methyltransferase MraW [Staphylococcus hominis SK119] gi|314936659|ref|ZP_07844006.1| S-adenosyl-methyltransferase MraW [Staphylococcus hominis subsp. hominis C80] gi|228270954|gb|EEK12342.1| S-adenosyl-methyltransferase MraW [Staphylococcus hominis SK119] gi|313655278|gb|EFS19023.1| S-adenosyl-methyltransferase MraW [Staphylococcus hominis subsp. hominis C80] Length = 311 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 103/304 (33%), Positives = 164/304 (53%), Gaps = 9/304 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 HV V+L++ I L+ + +D T G G++ ++ +IA+D+D A+ +E Sbjct: 4 HVSVMLKETIDELDIKEDGIYVDCTLGGAGHALYLLNQLNDDGRLIAIDQDTTALENAKE 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +RD+ + + F +L D + + G VDG+ +DLGVSS Q+D +RGFS+ L Sbjct: 64 VLRDHLHKVTFVHNNFRELTDILKNLGIEKVDGIYYDLGVSSPQLDIPERGFSYHHDAKL 123 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM ++A DVVN + L +I GEEK + +IA I R+ P +TT +L Sbjct: 124 DMRMDQTQELTAYDVVNDWPYEALVKIFYRYGEEKFSKQIARRIEAHREQQPIETTLELV 183 Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I++ + ++ HPA R FQA+RI VN+E+ + A + +K G + V++FH Sbjct: 184 DIIKEGIPAKARRKGGHPAKRIFQAIRIAVNDELSAFEDSIEQAIEHVKVKGRISVITFH 243 Query: 252 SLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDRL K+ F R + I A+ + + +K + T+ED+ N R+RSAK Sbjct: 244 SLEDRLCKQIFQEYEKGPDVPRGLPIIPEAYTPKLKRVNRKPITATEEDLDENNRARSAK 303 Query: 311 LRAG 314 LR Sbjct: 304 LRVA 307 >gi|148244441|ref|YP_001219135.1| S-adenosyl-methyltransferase [Candidatus Vesicomyosocius okutanii HA] gi|263504496|sp|A5CX97|RSMH_VESOH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|146326268|dbj|BAF61411.1| S-adenosyl-methyltransferase [Candidatus Vesicomyosocius okutanii HA] Length = 307 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 101/312 (32%), Positives = 172/312 (55%), Gaps = 24/312 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H V+ + + LN + +DATFG GG+++ S +IA D+D A+ + Sbjct: 6 HQSVMFNESMYALNIKTDGIYIDATFGRGGHAQGILNRLSKKGRLIAFDQDINAIEYANK 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + D + +L + FS++ + +G +DG++ DLGVSS Q++ RGFSF+ GP Sbjct: 66 NLVD--NRLTLIHSAFSKMLSIITKQGLIGRIDGILIDLGVSSPQLENAQRGFSFRVDGP 123 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ +G+SA+ + AN +++ ++ EK++ IA+ I K +++ +TT +L Sbjct: 124 LDMRMNQTTGMSATQWLKSANEEEIANVIYQFSNEKKSRHIANKIKKYQKNHVLETTLEL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++++ K V KN HPATR+FQA+RIF+N E+++L L ++ L G L ++SFH Sbjct: 184 ANIVSKVVKKQKNK--HPATRTFQAIRIFINQELKQLISVLEQSKDILSKNGRLSIISFH 241 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV------VPTQEDVAFNRR 305 S+EDR+VK+F S R P + I K + + ++ ++ N+R Sbjct: 242 SIEDRIVKRFIQKNS------RQKTLPKGLPIIENEIEKTYLKDLGKYLTSKAEIDNNKR 295 Query: 306 SRSAKLRAGMRT 317 +RSA LR + Sbjct: 296 ARSAILRVASKN 307 >gi|294791087|ref|ZP_06756245.1| S-adenosyl-methyltransferase MraW [Scardovia inopinata F0304] gi|294458984|gb|EFG27337.1| S-adenosyl-methyltransferase MraW [Scardovia inopinata F0304] Length = 342 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 112/311 (36%), Positives = 170/311 (54%), Gaps = 18/311 (5%) Query: 20 HVPVLLEKVIAL----LNPAPGK---VILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70 H PVLL++ L L+ A VI+D T G G++ +F S +I +DRD A Sbjct: 9 HTPVLLDECCQLVCGGLDQAAADRTPVIVDCTLGLAGHASAFLARASRARLIGIDRDREA 68 Query: 71 VSCGQETMRD--YKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGF 125 + + M++ + ++F A F + ++G VD V DLG+SS+QID DRGF Sbjct: 69 LDLATDRMKNLGFADRFIPLHAAFDDFSSLMENQGLDTVDAVFMDLGLSSLQIDESDRGF 128 Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA- 183 S+ PLDMRM ++A D++ +++ ++LTRI G+E+ + +IA A+V++R Sbjct: 129 SYSHDAPLDMRMDTDQTVTAQDILRESSKEELTRIFRHYGQERYSRQIASALVRQRDKGH 188 Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 P +TT L L+ + V S + +PA R FQALRI VN E+++LA L L GG Sbjct: 189 PVETTGQLVQLVDRVVPKSHRSGGNPAKRVFQALRIQVNGELDKLAATLPQIALHLSLGG 248 Query: 244 LLIVVSFHSLEDRLVKKFFA-SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 L+V S+HSLED++VK F A + +IP +A P F +T + Q++ Sbjct: 249 RLVVESYHSLEDKIVKSFMAQGLQANLPPGLPVIPDDAQP-FFTDLTHGAIKADQDEAEH 307 Query: 303 NRRSRSAKLRA 313 N RS S +LRA Sbjct: 308 NSRSTSVRLRA 318 >gi|313665282|ref|YP_004047153.1| S-adenosyl-methyltransferase MraW [Mycoplasma leachii PG50] gi|312950000|gb|ADR24596.1| S-adenosyl-methyltransferase MraW [Mycoplasma leachii PG50] Length = 309 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 112/307 (36%), Positives = 167/307 (54%), Gaps = 22/307 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSN--VIALDRDPFAVSCGQE 76 H+PVLL++ I LN P + +D T G G+ S ++ N + A+D+D A+ +E Sbjct: 4 HIPVLLDESIKYLNIKPNGIYVDCTLGRAGHASEILQRLSQNGFLYAIDQDKVAIDQAKE 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + F L Q FS L + VDG+++DLGVSS Q+D G RGFS++ GPL Sbjct: 64 KLEKISNNFFLIQGNFSNLSALLAINHVFNVDGILYDLGVSSPQLDIGSRGFSYKIDGPL 123 Query: 134 DMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 DMRM + ++A +VNQ + IL GEE A IA IV R P +T L Sbjct: 124 DMRMDITNNSLTADIIVNQYPETQIADILFKYGEESFAKNIAKKIVLSR---PINSTLKL 180 Query: 192 -----SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 S+L QK + K HPA ++FQALRIF+NNE+ L L+ A + L + G + Sbjct: 181 VEVIKSALPQKVLKQKK----HPAKKTFQALRIFINNELIVLENSLKQALELLNSKGRIC 236 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMA-VRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNR 304 V++FHSLE+++VK F + + + + +P A+ + F+ + KK + P+ ++ N Sbjct: 237 VITFHSLEEKIVKNIFNNSTNYFQEQLFNNLPIKANLNSQFKLVIKKPIKPSLLELENNY 296 Query: 305 RSRSAKL 311 RS SAKL Sbjct: 297 RSHSAKL 303 >gi|294787094|ref|ZP_06752348.1| S-adenosyl-methyltransferase MraW [Parascardovia denticolens F0305] gi|315226746|ref|ZP_07868534.1| S-adenosyl-methyltransferase MraW [Parascardovia denticolens DSM 10105] gi|294485927|gb|EFG33561.1| S-adenosyl-methyltransferase MraW [Parascardovia denticolens F0305] gi|315120878|gb|EFT84010.1| S-adenosyl-methyltransferase MraW [Parascardovia denticolens DSM 10105] Length = 348 Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 117/305 (38%), Positives = 166/305 (54%), Gaps = 12/305 (3%) Query: 20 HVPVLLEKVIALLNPA-PGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76 H PVLL+ + L+ +I+D T G G++ +F + + +I +DRD A++ E Sbjct: 8 HTPVLLDDCVRLITDGRQAPLIVDCTLGLAGHASAFLQADPQARLIGIDRDQEALTLATE 67 Query: 77 TMRDY--KEQFSLFQA---TFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 MRD ++F+ A +FSQ+ D K VD V DLG+SS+QID DRGFS+ Sbjct: 68 RMRDLGLSDRFTPVHAAFDSFSQVLDEQGIKTVDAVFMDLGLSSLQIDENDRGFSYSHDA 127 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF-QTTQ 189 PLDMRM ++A DV+ +DL RI G+E+ A IA +VK R+ ++T Sbjct: 128 PLDMRMDPGQSLTARDVLLTYGRQDLARIFREYGQERFAGPIASRLVKAREEGETPRSTG 187 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +L+ + + + +PA R FQALRI VN E+++L L A L GG L+V S Sbjct: 188 QLVALVDQVIPRAHRAPGNPAKRVFQALRIEVNGELDKLRMTLPQAACRLNLGGCLVVES 247 Query: 250 FHSLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 +HSLEDR+ K F AS V A +IP A P F +T+ V Q + A N RS S Sbjct: 248 YHSLEDRITKTFMASGIHADVPAGLPVIPQEAQP-FFADLTRGAVKAGQAEAAHNSRSTS 306 Query: 309 AKLRA 313 +LRA Sbjct: 307 VRLRA 311 >gi|57242049|ref|ZP_00369989.1| S-adenosyl-methyltransferase MraW [Campylobacter upsaliensis RM3195] gi|57017241|gb|EAL54022.1| S-adenosyl-methyltransferase MraW [Campylobacter upsaliensis RM3195] Length = 304 Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 106/299 (35%), Positives = 166/299 (55%), Gaps = 8/299 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 H+PVL ++V L + LD T G GG+S + KM N+ IA D+D A+ +E Sbjct: 5 HIPVLPKEVNHLFEKLNEGLFLDCTLGYGGHSENLLKMHPNLHLIACDQDEEALQFSKER 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 +R++ + L+ + FSQ+ + + K + G++ D+GVSS+ +D +RGFS +S LDMRM Sbjct: 65 LREFDARIRLYHSNFSQILEQIDLKNLRGILADIGVSSLHLDKDERGFSL-RSNFLDMRM 123 Query: 138 SCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 S +SA DV+N + + L I I GE K + +A I+K R + ++L ++ Sbjct: 124 DKSQSLSAFDVINTYSKEKLANIFKIYGELKDGAFLAEKIIKARAKKQIISAKELCEILS 183 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 T KN +I A +FQALRI VN E+E L L+ EKA +L ++ FHSLEDR Sbjct: 184 NTRL--KNRKISQAILAFQALRIEVNKELEVLELFLQKLEKAHLRDCILAIICFHSLEDR 241 Query: 257 LVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 +VK +F + + I A+ + + ++KK + P +E++ N RS AK+RA Sbjct: 242 IVKNYFKKWAKACICDERAIRCECGANHNLGEILSKKPITPDKEEIKANPRSSCAKMRA 300 >gi|195978690|ref|YP_002123934.1| S-adenosyl-methyltransferase MraW [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|262826706|sp|B4U4K4|RSMH_STREM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|195975395|gb|ACG62921.1| S-adenosyl-methyltransferase MraW [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 316 Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 108/309 (34%), Positives = 173/309 (55%), Gaps = 14/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HV VLL + + +L+ P + +DAT G G+S + ++ D+D A+ QE Sbjct: 7 HVTVLLHEAVDMLDIKPDGIYVDATLGGSGHSAYLLSLLGDKGHLYCFDQDQKAIDHAQE 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++ Y K Q + + F L+ + + GV DG+++DLGVSS Q+D +RGFS+++ Sbjct: 67 QLKPYIDKGQVTFIKDNFRHLKARLLEHGVTEIDGILYDLGVSSPQLDERERGFSYKQDA 126 Query: 132 PLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S + ++A +VVN + DL RI GE+K + +IA I + R P TT + Sbjct: 127 PLDMRMDSQAALTAYEVVNTYDFNDLVRIFFKYGEDKFSKQIARKIEQARAIKPISTTTE 186 Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L++LI K+ +K + HPA + FQA+RI VN+E+ ++ A + L G + V+ Sbjct: 187 LAALI-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADASIQQAIELLALDGRISVI 245 Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K F S IP P + + +++K ++P+Q+++ N R+ Sbjct: 246 TFHSLEDRLTKHLFKEASTADAPKGLPFIPDELKPKL-ELVSRKPILPSQKELMANNRAH 304 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 305 SAKLRVARK 313 >gi|145350048|ref|XP_001419435.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144579666|gb|ABO97728.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 314 Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 109/311 (35%), Positives = 166/311 (53%), Gaps = 25/311 (8%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCGQETMRDY 81 +++V+ + +D T GAGG++R+ + + + D D A + + + Sbjct: 1 MDEVLEAFRDVRARTHVDGTLGAGGHARAMIEAHEEMEHFVGFDVDASAHALARPRLERA 60 Query: 82 KE-----------QFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSF 127 + + SL +A F ++++ + GVD VV DLGVSSM +D +RGFSF Sbjct: 61 RAATRGDEATTTLRLSLVEANFRRMREALRALDVDGVDSVVLDLGVSSMHLDRAERGFSF 120 Query: 128 QKSGPLDMRMSCSGIS-ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 GPLDMRM S + A ++VN +++ RIL GEEK +A I +RR + Sbjct: 121 MNDGPLDMRMGESATTTAEEIVNAWPEEEIGRILREYGEEKHWRLLARRICERRAEKEIR 180 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 TT++L I K IHPATR+FQ +RI VN+E+ + + +A +AL+ GG L Sbjct: 181 TTRELVDAIGNVP--GKWGSIHPATRTFQGIRIAVNDELGAVEDVIPAAIEALRPGGRLA 238 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAV-----RHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 ++SFHSLED +VK+ F +G+ R+M A P + + IT+K VPT ++ Sbjct: 239 IISFHSLEDSIVKRRFRHFAGRAEPPSEEVNRYMPQPEAPPKIVKLITRKPKVPTSAEID 298 Query: 302 FNRRSRSAKLR 312 N RSRSAKLR Sbjct: 299 VNVRSRSAKLR 309 >gi|281424950|ref|ZP_06255863.1| S-adenosyl-methyltransferase MraW [Prevotella oris F0302] gi|281400794|gb|EFB31625.1| S-adenosyl-methyltransferase MraW [Prevotella oris F0302] Length = 315 Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 114/306 (37%), Positives = 168/306 (54%), Gaps = 17/306 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSC--- 73 HVPVLL+ + LN G + +D TFG GG+SR N + + D+D A Sbjct: 9 HVPVLLKPSVDGLNIQSGGIYVDVTFGGGGHSREILSRLDNQAHLYSFDQDADAEQNVMH 68 Query: 74 --GQETMRDYKE-QFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSF 127 G R + +F+ ++ F L++++ GV DG++ DLGVSS D RGFSF Sbjct: 69 REGSTEKRFVDDARFTFVRSNFRYLKNWMRYYGVEKIDGLLADLGVSSHHFDDESRGFSF 128 Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + PLDMRM+ +G++A+DVVN + + L + + GE KQ+ RIA A+VK R Sbjct: 129 RFDAPLDMRMNKRAGLTAADVVNDYDEEALANLFYLYGELKQSRRIAAALVKARAQQRIA 188 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 TTQD L F + + FQALRI VN+E++ L + L+SA + L++GG L Sbjct: 189 TTQDF--LKATEPLFKREREKKDMAKLFQALRIEVNHEMDALKEMLQSATELLRSGGRLS 246 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+++HSLEDR+VK + + + V+ P F + KV+VP+ ++ N RS Sbjct: 247 VITYHSLEDRIVKNMMKAGNAEGKKVQDFYGRIETP--FNLVNNKVIVPSADEQQENPRS 304 Query: 307 RSAKLR 312 RSAKLR Sbjct: 305 RSAKLR 310 >gi|296877054|ref|ZP_06901095.1| S-adenosyl-methyltransferase MraW [Streptococcus parasanguinis ATCC 15912] gi|296431915|gb|EFH17721.1| S-adenosyl-methyltransferase MraW [Streptococcus parasanguinis ATCC 15912] Length = 316 Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 111/320 (34%), Positives = 177/320 (55%), Gaps = 19/320 (5%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALD 65 MS HH V VLL + I +L+ P + +DAT G G+S ++ A D Sbjct: 1 MSKEFHH-----VTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLTKLNESGHLYAFD 55 Query: 66 RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120 +D A+ + + + E+ + + F L++ + D GV +G+ +DLGVSS Q+D Sbjct: 56 QDQHAIENAKIRLAPFIEKGMVTFIKDNFRHLKERLNDIGVTEINGICYDLGVSSPQLDE 115 Query: 121 GDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS++K PLDMRM+ + ++A +VVN + DL RI GE+K + +IA I + Sbjct: 116 RERGFSYKKDAPLDMRMNQEASLTAYEVVNTYDYHDLVRIFFKYGEDKFSKQIARKIEQA 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 R P +TT +L+ +I K+ +K + HPA + FQA+RI VN+E+ + ++ A Sbjct: 176 RAIKPIETTTELAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMD 234 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPT 296 L G + V++FHSLEDRL K+ F S +V IP + P + + I +K ++P+ Sbjct: 235 LLALDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKM-ELINRKPILPS 293 Query: 297 QEDVAFNRRSRSAKLRAGMR 316 +E++ N RS SAKLR + Sbjct: 294 EEELEENNRSHSAKLRVARK 313 >gi|327313078|ref|YP_004328515.1| S-adenosyl-methyltransferase MraW [Prevotella denticola F0289] gi|326945605|gb|AEA21490.1| S-adenosyl-methyltransferase MraW [Prevotella denticola F0289] Length = 314 Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 114/304 (37%), Positives = 174/304 (57%), Gaps = 17/304 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAV-SCGQ 75 HVPVLL + I LN G + +D TFG GG+SR S + GS++ + D+D A + G+ Sbjct: 9 HVPVLLNESIEGLNLHAGGIYVDVTFGGGGHSREILSRLEAGSHLYSFDQDADAEQNIGR 68 Query: 76 ETMRDYK-EQFSLFQATFSQLQDY-----VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 + + ++F+ ++ F L+++ VP +DG++ DLGVSS D RGFSF+ Sbjct: 69 MGLSSEQVDRFTFIRSNFRYLKNWMRYYSVPH--IDGLLADLGVSSHHFDDETRGFSFRF 126 Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM+ +G++A+D++N+ + + L IL + GE KQ+ RIA AIVK R+ ++TT Sbjct: 127 EAPLDMRMNKRAGMTAADILNEYDEEHLADILYLYGELKQSRRIAAAIVKGREQKAYKTT 186 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 DL L+ +F + + FQALRI VN E++ L + L +A L GG L V+ Sbjct: 187 NDL--LVITDPFFRRAREKKDMAKLFQALRIEVNYEMDALREMLLAAIGLLSPGGRLSVI 244 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 ++HSLEDR+VK S + + + P F+ + KV+ ++ N RSRS Sbjct: 245 TYHSLEDRMVKNVMKSGNIEGKVSQDFFGRIDTP--FRLVNSKVITANNDEQERNPRSRS 302 Query: 309 AKLR 312 AKLR Sbjct: 303 AKLR 306 >gi|15924169|ref|NP_371703.1| S-adenosyl-methyltransferase mraW [Staphylococcus aureus subsp. aureus Mu50] gi|15926762|ref|NP_374295.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus N315] gi|21282791|ref|NP_645879.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus MW2] gi|49483342|ref|YP_040566.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus MRSA252] gi|49486019|ref|YP_043240.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus MSSA476] gi|148267671|ref|YP_001246614.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus JH9] gi|150393729|ref|YP_001316404.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus JH1] gi|156979500|ref|YP_001441759.1| hypothetical protein SAHV_1169 [Staphylococcus aureus subsp. aureus Mu3] gi|161509356|ref|YP_001575015.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221140649|ref|ZP_03565142.1| S-adenosyl-methyltransferase [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253314966|ref|ZP_04838179.1| S-adenosyl-methyltransferase [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253733582|ref|ZP_04867747.1| S-adenosyl-methyltransferase [Staphylococcus aureus subsp. aureus TCH130] gi|255005966|ref|ZP_05144567.2| S-adenosyl-methyltransferase [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257425233|ref|ZP_05601658.1| methylase MraW [Staphylococcus aureus subsp. aureus 55/2053] gi|257427893|ref|ZP_05604291.1| methylase MraW [Staphylococcus aureus subsp. aureus 65-1322] gi|257430526|ref|ZP_05606908.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Staphylococcus aureus subsp. aureus 68-397] gi|257433287|ref|ZP_05609645.1| S-adenosyl-methyltransferase mraW [Staphylococcus aureus subsp. aureus E1410] gi|257436129|ref|ZP_05612176.1| methylase MraW [Staphylococcus aureus subsp. aureus M876] gi|257795765|ref|ZP_05644744.1| methylase MraW [Staphylococcus aureus A9781] gi|258415989|ref|ZP_05682259.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus A9763] gi|258419736|ref|ZP_05682703.1| methylase MraW [Staphylococcus aureus A9719] gi|258444516|ref|ZP_05692845.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus A8115] gi|258447651|ref|ZP_05695795.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Staphylococcus aureus A6300] gi|258449493|ref|ZP_05697596.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus A6224] gi|258451877|ref|ZP_05699898.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus A5948] gi|258454872|ref|ZP_05702836.1| S-adenosyl-methyltransferase mraW [Staphylococcus aureus A5937] gi|262048753|ref|ZP_06021635.1| hypothetical protein SAD30_1583 [Staphylococcus aureus D30] gi|262051681|ref|ZP_06023900.1| hypothetical protein SA930_1508 [Staphylococcus aureus 930918-3] gi|269202794|ref|YP_003282063.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus ED98] gi|282892665|ref|ZP_06300900.1| methylase MraW [Staphylococcus aureus A8117] gi|282903731|ref|ZP_06311619.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus C160] gi|282905495|ref|ZP_06313350.1| methylase MraW [Staphylococcus aureus subsp. aureus Btn1260] gi|282908470|ref|ZP_06316300.1| MraW methylase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910752|ref|ZP_06318555.1| MraW methylase [Staphylococcus aureus subsp. aureus WBG10049] gi|282913955|ref|ZP_06321742.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus M899] gi|282916429|ref|ZP_06324191.1| methylase MraW [Staphylococcus aureus subsp. aureus D139] gi|282918877|ref|ZP_06326612.1| methylase MraW [Staphylococcus aureus subsp. aureus C427] gi|282919960|ref|ZP_06327689.1| methylase MraW [Staphylococcus aureus A9765] gi|282924000|ref|ZP_06331676.1| methylase MraW [Staphylococcus aureus subsp. aureus C101] gi|282929224|ref|ZP_06336799.1| methylase MraW [Staphylococcus aureus A10102] gi|283770241|ref|ZP_06343133.1| S-adenosyl-methyltransferase [Staphylococcus aureus subsp. aureus H19] gi|283957922|ref|ZP_06375373.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus A017934/97] gi|284024103|ref|ZP_06378501.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus 132] gi|293500988|ref|ZP_06666839.1| methylase MraW [Staphylococcus aureus subsp. aureus 58-424] gi|293509946|ref|ZP_06668655.1| methylase MraW [Staphylococcus aureus subsp. aureus M809] gi|293526535|ref|ZP_06671220.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus M1015] gi|294848172|ref|ZP_06788919.1| methylase MraW [Staphylococcus aureus A9754] gi|295407117|ref|ZP_06816918.1| methylase MraW [Staphylococcus aureus A8819] gi|295427665|ref|ZP_06820297.1| methylase MraW [Staphylococcus aureus subsp. aureus EMRSA16] gi|296276145|ref|ZP_06858652.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus MR1] gi|297208179|ref|ZP_06924609.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297245997|ref|ZP_06929856.1| methylase MraW [Staphylococcus aureus A8796] gi|297591377|ref|ZP_06950015.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus MN8] gi|300912257|ref|ZP_07129700.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus TCH70] gi|304381261|ref|ZP_07363914.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|42560201|sp|P60392|RSMH_STAAN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|42560202|sp|P60393|RSMH_STAA8 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|42560203|sp|P60394|RSMH_STAAW RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|48474288|sp|P60485|RSMH_STAAM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|54036187|sp|Q6GA33|RSMH_STAAS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|54036188|sp|Q6GHQ6|RSMH_STAAR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262826623|sp|A7X1B8|RSMH_STAA1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262826627|sp|A6U0Z9|RSMH_STAA2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262826631|sp|A5IS65|RSMH_STAA9 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262826654|sp|A8Z3M0|RSMH_STAAT RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262831474|sp|Q2FHQ8|RSMH_STAA3 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|2149891|gb|AAC45622.1| unknown [Staphylococcus aureus] gi|13700978|dbj|BAB42274.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus N315] gi|14246949|dbj|BAB57341.1| S-adenosyl-methyltransferase mraW [Staphylococcus aureus subsp. aureus Mu50] gi|21204229|dbj|BAB94927.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MW2] gi|49241471|emb|CAG40157.1| MraW methylase family protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49244462|emb|CAG42890.1| MraW methylase family protein [Staphylococcus aureus subsp. aureus MSSA476] gi|147740740|gb|ABQ49038.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus JH9] gi|149946181|gb|ABR52117.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus JH1] gi|156721635|dbj|BAF78052.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|160368165|gb|ABX29136.1| S-adenosyl-methyltransferase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253728452|gb|EES97181.1| S-adenosyl-methyltransferase [Staphylococcus aureus subsp. aureus TCH130] gi|257271690|gb|EEV03828.1| methylase MraW [Staphylococcus aureus subsp. aureus 55/2053] gi|257274734|gb|EEV06221.1| methylase MraW [Staphylococcus aureus subsp. aureus 65-1322] gi|257278654|gb|EEV09273.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Staphylococcus aureus subsp. aureus 68-397] gi|257281380|gb|EEV11517.1| S-adenosyl-methyltransferase mraW [Staphylococcus aureus subsp. aureus E1410] gi|257284411|gb|EEV14531.1| methylase MraW [Staphylococcus aureus subsp. aureus M876] gi|257789737|gb|EEV28077.1| methylase MraW [Staphylococcus aureus A9781] gi|257839325|gb|EEV63799.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus A9763] gi|257844321|gb|EEV68703.1| methylase MraW [Staphylococcus aureus A9719] gi|257850009|gb|EEV73962.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus A8115] gi|257853842|gb|EEV76801.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Staphylococcus aureus A6300] gi|257857481|gb|EEV80379.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus A6224] gi|257860485|gb|EEV83312.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus A5948] gi|257863255|gb|EEV86019.1| S-adenosyl-methyltransferase mraW [Staphylococcus aureus A5937] gi|259160416|gb|EEW45441.1| hypothetical protein SA930_1508 [Staphylococcus aureus 930918-3] gi|259163209|gb|EEW47769.1| hypothetical protein SAD30_1583 [Staphylococcus aureus D30] gi|262075084|gb|ACY11057.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus ED98] gi|269940673|emb|CBI49052.1| MraW methylase family protein [Staphylococcus aureus subsp. aureus TW20] gi|282313972|gb|EFB44364.1| methylase MraW [Staphylococcus aureus subsp. aureus C101] gi|282316687|gb|EFB47061.1| methylase MraW [Staphylococcus aureus subsp. aureus C427] gi|282319869|gb|EFB50217.1| methylase MraW [Staphylococcus aureus subsp. aureus D139] gi|282322023|gb|EFB52347.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus M899] gi|282325357|gb|EFB55666.1| MraW methylase [Staphylococcus aureus subsp. aureus WBG10049] gi|282327532|gb|EFB57815.1| MraW methylase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330787|gb|EFB60301.1| methylase MraW [Staphylococcus aureus subsp. aureus Btn1260] gi|282589183|gb|EFB94280.1| methylase MraW [Staphylococcus aureus A10102] gi|282594676|gb|EFB99660.1| methylase MraW [Staphylococcus aureus A9765] gi|282595349|gb|EFC00313.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus C160] gi|282764662|gb|EFC04787.1| methylase MraW [Staphylococcus aureus A8117] gi|283460388|gb|EFC07478.1| S-adenosyl-methyltransferase [Staphylococcus aureus subsp. aureus H19] gi|283470389|emb|CAQ49600.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus ST398] gi|283790071|gb|EFC28888.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus A017934/97] gi|285816861|gb|ADC37348.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus 04-02981] gi|290920607|gb|EFD97670.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus M1015] gi|291095993|gb|EFE26254.1| methylase MraW [Staphylococcus aureus subsp. aureus 58-424] gi|291467396|gb|EFF09913.1| methylase MraW [Staphylococcus aureus subsp. aureus M809] gi|294824972|gb|EFG41394.1| methylase MraW [Staphylococcus aureus A9754] gi|294967970|gb|EFG43998.1| methylase MraW [Staphylococcus aureus A8819] gi|295128023|gb|EFG57657.1| methylase MraW [Staphylococcus aureus subsp. aureus EMRSA16] gi|296886918|gb|EFH25821.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297177161|gb|EFH36415.1| methylase MraW [Staphylococcus aureus A8796] gi|297576263|gb|EFH94979.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus MN8] gi|300886503|gb|EFK81705.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus TCH70] gi|304340244|gb|EFM06185.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312438444|gb|ADQ77515.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus TCH60] gi|312829573|emb|CBX34415.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315130970|gb|EFT86954.1| S-adenosyl-methyltransferase [Staphylococcus aureus subsp. aureus CGS03] gi|315196909|gb|EFU27252.1| S-adenosyl-methyltransferase [Staphylococcus aureus subsp. aureus CGS01] gi|329313847|gb|AEB88260.1| Ribosomal RNA small subunit methyltransferase H [Staphylococcus aureus subsp. aureus T0131] gi|329725033|gb|EGG61529.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus 21189] gi|329727402|gb|EGG63858.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus 21172] Length = 311 Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 104/306 (33%), Positives = 165/306 (53%), Gaps = 13/306 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+ V+L + I LN V +D T G G++ ++ +IA+D+D A+ +E Sbjct: 4 HISVMLNETIDYLNVKENGVYIDCTLGGAGHALYLLNQLNDDGRLIAIDQDQTAIDNAKE 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++D+ + + + F +L + D + VDG+ +DLGVSS Q+D +RGFS+ L Sbjct: 64 VLKDHLHKVTFVHSNFRELTQILKDLNIEKVDGIYYDLGVSSPQLDIPERGFSYHHDATL 123 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM ++A ++VN + + L +I GEEK + +IA I R+ P TT +L Sbjct: 124 DMRMDQTQELTAYEIVNNWSYEALVKIFYRYGEEKFSKQIARRIEAHREQQPITTTLELV 183 Query: 193 SLIQKTVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I++ + +K R HPA R FQALRI VN+E+ + A + +K G + V++F Sbjct: 184 DIIKEGIP-AKARRKGGHPAKRVFQALRIAVNDELSAFEDSIEQAIELVKVDGRISVITF 242 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 HSLEDRL K+ F R + IP P + + + +K + T+ED+ N R+RS Sbjct: 243 HSLEDRLCKQVFQEYEKGPEVPRGLPVIPEAYTPKL-KRVNRKPITATEEDLDDNNRARS 301 Query: 309 AKLRAG 314 AKLR Sbjct: 302 AKLRVA 307 >gi|315194065|gb|EFU24458.1| S-adenosyl-methyltransferase [Staphylococcus aureus subsp. aureus CGS00] Length = 311 Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 104/306 (33%), Positives = 165/306 (53%), Gaps = 13/306 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+ V+L + I LN V +D T G G++ ++ +IA+D+D A+ +E Sbjct: 4 HISVMLNETIDYLNIKENGVYIDCTLGGAGHALYLLNQLNDDGRLIAIDQDQTAIDNAKE 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++D+ + + + F +L + D + VDG+ +DLGVSS Q+D +RGFS+ L Sbjct: 64 VLKDHLHKVTFVHSNFRELTQILKDLNIEKVDGIYYDLGVSSPQLDIPERGFSYHHDATL 123 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM ++A ++VN + + L +I GEEK + +IA I R+ P TT +L Sbjct: 124 DMRMDQTQELTAYEIVNNWSYEALVKIFYRYGEEKFSKQIARRIEAHREQQPITTTLELV 183 Query: 193 SLIQKTVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I++ + +K R HPA R FQALRI VN+E+ + A + +K G + V++F Sbjct: 184 DIIKEGIP-AKARRKGGHPAKRVFQALRIAVNDELSAFEDSIEQAIELVKVDGRISVITF 242 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 HSLEDRL K+ F R + IP P + + + +K + T+ED+ N R+RS Sbjct: 243 HSLEDRLCKQVFQEYEKGPEVPRGLPVIPEAYTPKL-KRVNRKPITATEEDLDDNNRARS 301 Query: 309 AKLRAG 314 AKLR Sbjct: 302 AKLRVA 307 >gi|291278991|ref|YP_003495826.1| S-adenosyl-methyltransferase [Deferribacter desulfuricans SSM1] gi|290753693|dbj|BAI80070.1| S-adenosyl-methyltransferase [Deferribacter desulfuricans SSM1] Length = 306 Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 113/310 (36%), Positives = 168/310 (54%), Gaps = 17/310 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVS----- 72 H PVL ++I+ VI+D T G GG++ K +I LDRD A+ Sbjct: 2 HKPVLYNELISFFKGLKNGVIVDCTGGGGGHAEGILKEIKPERLIILDRDEDAIKRLNEK 61 Query: 73 -CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 G E + YK FS + L+ + V+G+ D GVS+ + RGFSF+++G Sbjct: 62 FKGMENVEIYKSNFSEIDSVLQSLKI----EKVNGLYADFGVSNFHLLDSKRGFSFRRNG 117 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S ++A VVN+ + + L I GEE+ AS+IA AIVK R+S TT + Sbjct: 118 PLDMRMDKSLYLTAEKVVNEYSAETLKNIFRKFGEERFASKIADAIVKTRKSKRITTTLE 177 Query: 191 LSSLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ +++ + F K +HPAT+ F ALRIF+NNE+E + L+ + GG++ + Sbjct: 178 LAEIVKNAIPERFHKPG-VHPATKVFMALRIFINNELESIESLLKKLPTIVDKGGIVAFI 236 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA-HPAVFQSITKKVVVPTQEDVAFNRRSR 307 SFHSLEDRLVK++ + N F+ +TKK + PT++++ N SR Sbjct: 237 SFHSLEDRLVKEYLQYYEKSCICPPDYPVCNCDKEKQFKILTKKPITPTEKEITENPLSR 296 Query: 308 SAKLRAGMRT 317 SAK+R G+R Sbjct: 297 SAKMRVGVRV 306 >gi|189502287|ref|YP_001958004.1| hypothetical protein Aasi_0908 [Candidatus Amoebophilus asiaticus 5a2] gi|263446692|sp|B3ESS3|RSMH_AMOA5 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|189497728|gb|ACE06275.1| hypothetical protein Aasi_0908 [Candidatus Amoebophilus asiaticus 5a2] Length = 310 Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 116/303 (38%), Positives = 166/303 (54%), Gaps = 11/303 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPFAVSCGQE 76 H PVLLE+ + L P + +D TFG GG++++ K G + A D+D A S Sbjct: 12 HQPVLLEESLQGLAIQPDGIYIDTTFGGGGHAKAILAQLKRG-KLFAFDQDEDAESIAS- 69 Query: 77 TMRDYKEQFSLFQATFSQ-LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 T D F + F Q Y + +DG++ DLGVSS QID RGFS + GPLDM Sbjct: 70 TWHDPNFTFIRANSRFIQRFLAYHQIEKIDGLIADLGVSSYQIDTALRGFSTRSEGPLDM 129 Query: 136 RMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM S ++AS +VN + + LT++ GE A +A A++ R P +TTQ L + Sbjct: 130 RMDQSSSLTASQIVNTYSFEALTQLFRTYGELHSAPALAKALIAARTKHPIETTQSLKEI 189 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 K+ + + FQALRI VN+E+ L L + + LK GG L+++S+HSLE Sbjct: 190 ALPFSPPRKSAKF--LAQVFQALRIEVNDELGALKSLLEQSLQLLKPGGRLVIISYHSLE 247 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 DRLVK+F + + + + M + P F + KK +VPT+E++ N RSRSAKLR G Sbjct: 248 DRLVKRFIKTGNFEGELDKDMYGNPLQP--FVPVYKKAIVPTEEELVINSRSRSAKLRVG 305 Query: 315 MRT 317 RT Sbjct: 306 ERT 308 >gi|34556618|ref|NP_906433.1| S-adenosyl-methyltransferase MraW [Wolinella succinogenes DSM 1740] gi|42559439|sp|Q7MSS6|RSMH_WOLSU RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|34482332|emb|CAE09333.1| conserved hypothetical protein CJ0693C [Wolinella succinogenes] Length = 303 Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 110/301 (36%), Positives = 172/301 (57%), Gaps = 14/301 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQET 77 H+ VL +V+ + P +D T G GG+S + K ++I +D+DP A+ Q+ Sbjct: 5 HLSVLKNEVLEIFAPLSEGYFIDCTLGFGGHSEAILKAHPKLSLIGIDQDPHALEFSQKR 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 + +K++FS + FS++ + + + G++ D+GVSS+Q+D RGFSF S LDMRM Sbjct: 65 LAPFKDRFSFREGRFSEVLPTLKELPIAGILADIGVSSLQLDDSSRGFSFH-SERLDMRM 123 Query: 138 SCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 + + +SA +VVN L RI GE K++ ++ I + R+ + + LS LI+ Sbjct: 124 NPNAQLSALEVVNSYPQDRLERIFKEYGEIKESKKLVSLISEERKKGRITSAEALSRLIE 183 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 + +F + IHPAT +FQA+RI VN+E+ E+ + L++ + K G + ++SFHSLEDR Sbjct: 184 R--HFKRVGNIHPATLAFQAIRIEVNDELGEIGRALQTIGEIAK--GRVSIISFHSLEDR 239 Query: 257 LVKKFFASRSGKVM----AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LVK FF S + A R +N Q +TKK +V T E+ N RSRSAK+R Sbjct: 240 LVKNFFKEWSNSCLCPPEAFRCTCGNNHEKG--QILTKKPLVATPEESKANPRSRSAKMR 297 Query: 313 A 313 A Sbjct: 298 A 298 >gi|27467772|ref|NP_764409.1| hypothetical protein SE0854 [Staphylococcus epidermidis ATCC 12228] gi|30173015|sp|Q8CSX7|RSMH_STAES RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|27315316|gb|AAO04451.1|AE016746_241 conserved hypothetical protein [Staphylococcus epidermidis ATCC 12228] gi|329730036|gb|EGG66427.1| S-adenosyl-methyltransferase MraW [Staphylococcus epidermidis VCU144] gi|329736180|gb|EGG72452.1| S-adenosyl-methyltransferase MraW [Staphylococcus epidermidis VCU028] Length = 311 Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 104/305 (34%), Positives = 167/305 (54%), Gaps = 11/305 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 HV V+L + I LN V +D T G G++ ++ +IA+D+D A+ +E Sbjct: 4 HVSVMLNETIDYLNIKEDGVYVDCTLGGAGHALYLLNQLNDKGRLIAIDQDLTAIENAKE 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++++ + + F +L + + + + VDG+ +DLGVSS Q+D +RGFS+ L Sbjct: 64 VLKEHLHKVTFVHNNFRELTNILNELEIEKVDGIYYDLGVSSPQLDVPERGFSYHNDAKL 123 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM +SA +VVNQ + + L RI GEEK + +IA I R+ P +TT +L Sbjct: 124 DMRMDQTQSLSAYEVVNQWSYEALVRIFFRYGEEKFSKQIARRIEAHREQQPIETTLELV 183 Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I++ + ++ HPA R FQA+RI VN+E+ + A + +K GG + V++FH Sbjct: 184 DVIKEGIPAKARRKGGHPAKRVFQAIRIAVNDELSAFEDSVEQAIECVKVGGRISVITFH 243 Query: 252 SLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDRL K+ F + V +IP P + + + +K + T +D+ N R+RSA Sbjct: 244 SLEDRLCKQIFQEFEKGPDVPRGLPVIPEAYTPKL-KRVNRKPITATDDDLNENNRARSA 302 Query: 310 KLRAG 314 KLR Sbjct: 303 KLRVA 307 >gi|251810609|ref|ZP_04825082.1| S-adenosyl-methyltransferase [Staphylococcus epidermidis BCM-HMP0060] gi|282876390|ref|ZP_06285257.1| S-adenosyl-methyltransferase MraW [Staphylococcus epidermidis SK135] gi|251805769|gb|EES58426.1| S-adenosyl-methyltransferase [Staphylococcus epidermidis BCM-HMP0060] gi|281295415|gb|EFA87942.1| S-adenosyl-methyltransferase MraW [Staphylococcus epidermidis SK135] gi|329734446|gb|EGG70759.1| S-adenosyl-methyltransferase MraW [Staphylococcus epidermidis VCU045] Length = 311 Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 104/305 (34%), Positives = 167/305 (54%), Gaps = 11/305 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 HV V+L + I LN V +D T G G++ ++ +IA+D+D A+ +E Sbjct: 4 HVSVMLNETIDYLNIKEDGVYVDCTLGGAGHALYLLNQLNDKGRLIAIDQDLTAIENAKE 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++++ + + F +L + + + + VDG+ +DLGVSS Q+D +RGFS+ L Sbjct: 64 VLKEHLHKVTFVHNNFRELTNILNELEIEKVDGIYYDLGVSSPQLDVPERGFSYHNDAKL 123 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM +SA +VVNQ + + L RI GEEK + +IA I R+ P +TT +L Sbjct: 124 DMRMDQTQSLSAYEVVNQWSYEALVRIFFRYGEEKFSKQIARRIEAHREQQPIETTLELV 183 Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I++ + ++ HPA R FQA+RI VN+E+ + A + +K GG + V++FH Sbjct: 184 DVIKEGIPAKARRKGGHPAKRVFQAIRIAVNDELSAFEDSVEQAIECVKVGGRISVITFH 243 Query: 252 SLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDRL K+ F + V +IP P + + + +K + T +D+ N R+RSA Sbjct: 244 SLEDRLCKQIFQEFEKGPDVPRGLPVIPEAYTPKL-KRVNRKPITATDDDLNDNNRARSA 302 Query: 310 KLRAG 314 KLR Sbjct: 303 KLRVA 307 >gi|313772507|gb|EFS38473.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL074PA1] gi|313830652|gb|EFS68366.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL007PA1] gi|313833872|gb|EFS71586.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL056PA1] gi|314973654|gb|EFT17750.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL053PA1] gi|314976247|gb|EFT20342.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL045PA1] gi|314983544|gb|EFT27636.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL005PA1] gi|315096274|gb|EFT68250.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL038PA1] gi|327325910|gb|EGE67700.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL096PA2] gi|327446210|gb|EGE92864.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL043PA2] gi|327447807|gb|EGE94461.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL043PA1] gi|328760593|gb|EGF74161.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL099PA1] Length = 337 Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 111/305 (36%), Positives = 166/305 (54%), Gaps = 13/305 (4%) Query: 20 HVPVLLEKVIALLN---PAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCG 74 H+PV+ +++ LL + +V +D T G GG++ + + +V + +DRD A++ Sbjct: 14 HIPVMRARILDLLAVVLKSGRRVHVDGTLGMGGHAEAVLRRFPDVELVGIDRDQQALTMA 73 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + + ++ L A +L + + D G VD V+ DLG+SS QID +RGFS+ Sbjct: 74 EARLEPFADRVHLVHAVHDELPEVLDDLGLDYVDSVLLDLGLSSFQIDEVERGFSYSVDS 133 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM SG +A+ ++N+++ L R+L GEEK A RI AIV R P +T+ Sbjct: 134 PLDMRMDQSSGRTAAQILNESDPGALVRMLREYGEEKFADRIVRAIVTERDRQPIETSGR 193 Query: 191 LSSLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L +I + + HPA R+FQALRI VN E+E L L A L GG + V+ Sbjct: 194 LVEIITGAIPATVRRKRHSHPAKRTFQALRIAVNREMETLPAVLPRALDRLDVGGRIAVL 253 Query: 249 SFHSLEDRLVKKFFASRSGKVM-AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 S+HSLEDR VK+ F A M+P + A F +T+ P ++VA N RS Sbjct: 254 SYHSLEDRPVKEAFRDACADTAPAGLPMVPESM-AAKFNPVTRGAERPDADEVATNPRSA 312 Query: 308 SAKLR 312 SA+LR Sbjct: 313 SARLR 317 >gi|172040893|ref|YP_001800607.1| S-adenosyl-methyltransferase MraW [Corynebacterium urealyticum DSM 7109] gi|263446151|sp|B1VHD2|RSMH_CORU7 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|171852197|emb|CAQ05173.1| S-adenosyl-methyltransferase [Corynebacterium urealyticum DSM 7109] Length = 353 Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 108/331 (32%), Positives = 183/331 (55%), Gaps = 44/331 (13%) Query: 20 HVPVLLEKVIALLN------PAPGK-VILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70 HVPV+ ++++ L+ AP + +I+D T GAGG++ +F + N VI LDRDP A Sbjct: 14 HVPVMRQRMVELVGIGVTAGSAPAQPIIVDGTLGAGGHTEAFLEAYPNAIVIGLDRDPNA 73 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYV------PD-------KGVDGVVFDLGVSSMQ 117 ++ + + + ++F +Q F + + + PD +G+ G +FDLGVSSMQ Sbjct: 74 LAEARARLERFGQRFFSYQTRFDGIGEALEHFSEDPDFPVDIREQGISGFLFDLGVSSMQ 133 Query: 118 IDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 +D DRGF+++ PLDMRM S ++A++++N +L RIL G+EK A +IA A+ Sbjct: 134 LDQEDRGFAYRVDAPLDMRMDPSSRLTAAEILNTYEHGELARILKRYGDEKFAGKIASAV 193 Query: 177 VKRRQSAPFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 ++ R+ PF+ + L L+ T+ ++ HPA R+FQALRI VN E+E L + +A Sbjct: 194 IREREKQPFENSARLVDLLYATIPAAARRTGGHPAKRTFQALRIEVNAELESLELVIPAA 253 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV----------F 285 L+ G + +S+ SLED++VK+ ++ M S+ P + F Sbjct: 254 FSWLRVDGAGVFMSYQSLEDKIVKQ----------QLKGMTESSTPPGLPVELPGTEPEF 303 Query: 286 QSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 + +T+ +++++A N RS ++RA R Sbjct: 304 ELLTRGAEKASEQEIAENSRSAPVRVRAARR 334 >gi|225871093|ref|YP_002747040.1| S-adenosyl-methyltransferase MraW [Streptococcus equi subsp. equi 4047] gi|262826692|sp|C0M7A8|RSMH_STRE4 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|225700497|emb|CAW94939.1| S-adenosyl-methyltransferase MraW [Streptococcus equi subsp. equi 4047] Length = 316 Score = 170 bits (431), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 108/309 (34%), Positives = 173/309 (55%), Gaps = 14/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HV VLL + + +L+ P + +DAT G G+S + ++ D+D A+ QE Sbjct: 7 HVTVLLHEAVDMLDIKPDGIYVDATLGGSGHSAYLLSLLGDKGHLYCFDQDQKAIDHAQE 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++ Y K Q + + F L+ + + GV DG+++DLGVSS Q+D +RGFS+++ Sbjct: 67 QLKPYIDKGQVTFIKDNFRHLKARLLEHGVTEIDGILYDLGVSSPQLDERERGFSYKQDA 126 Query: 132 PLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S + ++A +VVN + DL RI GE+K + +IA I + R P TT + Sbjct: 127 PLDMRMDSQAALTAYEVVNTYDFNDLVRIFFKYGEDKFSKQIARKIEQARAIKPISTTTE 186 Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L++LI K+ +K + HPA + FQA+RI VN+E+ ++ A + L G + V+ Sbjct: 187 LAALI-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADASIQRAIELLALDGRISVI 245 Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K F S IP P + + +++K ++P+Q+++ N R+ Sbjct: 246 TFHSLEDRLTKHLFKEASTADAPKGLPFIPDELKPKL-ELVSRKPILPSQKELMANNRAH 304 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 305 SAKLRVARK 313 >gi|163752984|ref|ZP_02160108.1| S-adenosylmethionine methyltransferase [Kordia algicida OT-1] gi|161326716|gb|EDP98041.1| S-adenosylmethionine methyltransferase [Kordia algicida OT-1] Length = 298 Score = 170 bits (431), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 116/310 (37%), Positives = 171/310 (55%), Gaps = 29/310 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQE 76 H PVLL++ + LN V +D TFG GG+S+ ++G N + A D+D A+ + Sbjct: 4 HNPVLLKETVDGLNIKEDGVYVDVTFGGGGHSKEILNRLGENGKLYAFDQDQDAL---EN 60 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 T+ D + F+L F L+ ++ G VDG++ D GVSS Q D +RGFS + L Sbjct: 61 TIDDSR--FTLIHQNFRHLKKFLRFYGIKKVDGILGDFGVSSHQFDVAERGFSLRFEADL 118 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM G ISA VVN+ + +DL IL + GE + A IA IV R P +TT++L Sbjct: 119 DMRMDQEGEISAYHVVNEYSEEDLRSILSLYGEVRNAKGIAAQIVSARSEEPIKTTEELR 178 Query: 193 SLIQKTVYFSKNNRIHPA-TRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +Q+ F +R H + +QA+RI VN EIE L + L ++ L+ GG L ++S+H Sbjct: 179 VALQR---FLPKHREHKVLAQIYQAIRIEVNQEIEVLKEFLLQTQELLEKGGRLSLISYH 235 Query: 252 SLEDRLVKKF-----FASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 SLEDRLVK++ F K R +P F+ + K+++P+ E++ N R+ Sbjct: 236 SLEDRLVKRYIRNGLFEGEPEKDFYGRVEVP-------FKKVG-KLIIPSNEEIKTNNRA 287 Query: 307 RSAKLRAGMR 316 RSAKLR R Sbjct: 288 RSAKLRIAER 297 >gi|322373647|ref|ZP_08048183.1| S-adenosyl-methyltransferase MraW [Streptococcus sp. C150] gi|321278689|gb|EFX55758.1| S-adenosyl-methyltransferase MraW [Streptococcus sp. C150] Length = 316 Score = 170 bits (431), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 110/309 (35%), Positives = 171/309 (55%), Gaps = 14/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 HV VLL + + +L+ P + +DAT G G+S S ++ D+D A+ Q Sbjct: 7 HVTVLLHETVDMLDIKPDGIYVDATLGGAGHSSYLLSQLSEKGHLYCFDQDQKAIDNAQG 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++DY K + + F L+ + GV DG+++DLGVSS Q+D +RGFS+++ Sbjct: 67 RLKDYIDKGMVTFIKDNFRNLRSNLEALGVSEIDGILYDLGVSSPQLDERERGFSYKQDA 126 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM+ + ++A +VVN DL RI GE+K + +IA I + RQ P +TT + Sbjct: 127 KLDMRMNEEASLTAYEVVNTYPYNDLVRIFFKYGEDKFSKQIARKIEQARQVKPIETTTE 186 Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ +I K+ +K + HPA + FQA+RI VN+E+ + ++ A L G + V+ Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQEALDLLAVDGRISVI 245 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F S V IP + P V + +K ++P+QE++ N RS Sbjct: 246 TFHSLEDRLTKQLFKEASTVDVPKGLPFIPEDLQPKV-ALVNRKPILPSQEELEANNRSH 304 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 305 SAKLRVAKK 313 >gi|269219541|ref|ZP_06163395.1| S-adenosyl-methyltransferase MraW [Actinomyces sp. oral taxon 848 str. F0332] gi|269210783|gb|EEZ77123.1| S-adenosyl-methyltransferase MraW [Actinomyces sp. oral taxon 848 str. F0332] Length = 335 Score = 170 bits (431), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 113/311 (36%), Positives = 174/311 (55%), Gaps = 11/311 (3%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCG 74 HVPVLLE+ + LL PA V++DAT G GG+S +F + +N V+ +DRDP A+ Sbjct: 20 HVPVLLEECVNLLGPALTAEAPVMIDATLGMGGHSFAFLERFANLTVVGIDRDPEAIELA 79 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 E + + ++F +AT+ + D + G D V+ DLGVSS+Q+D RGFS+ Sbjct: 80 GERLARFGKRFVAVRATYDDVSDVAAEYGRAGRADAVLMDLGVSSLQLDDEGRGFSYSGD 139 Query: 131 GPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 GPLDMRM G +A+DV+ A+ +LTRIL GEE+ ASRIA I+ R + P + T Sbjct: 140 GPLDMRMDKTGGPTAADVLASADKAELTRILREYGEERFASRIAARILAARAAEPIERTG 199 Query: 190 DLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ +++ + ++ +P R+FQALRI VN+E+ L + + A +A+ GG + V Sbjct: 200 QLADIVRDAIPAPARRTGGNPCKRTFQALRIAVNDELALLRRAIPRAIEAIAVGGRIAVE 259 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 S+ SLED++VK+ A + + + + +T+ V ++ N RS S Sbjct: 260 SYQSLEDKIVKREMAKGATSSTPAGLPVELDDRAPYLRLLTRGAVKADAAELQANPRSAS 319 Query: 309 AKLRAGMRTVE 319 +LRA R E Sbjct: 320 VRLRAAERLRE 330 >gi|322391027|ref|ZP_08064531.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus parasanguinis ATCC 903] gi|321142257|gb|EFX37731.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus parasanguinis ATCC 903] Length = 316 Score = 170 bits (431), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 110/320 (34%), Positives = 177/320 (55%), Gaps = 19/320 (5%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALD 65 MS HH V VLL + I +L+ P + +DAT G G+S ++ A D Sbjct: 1 MSKEFHH-----VTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLTKLNESGHLYAFD 55 Query: 66 RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120 +D A+ + + + E+ + + F L++ + + GV DG+ +DLGVSS Q+D Sbjct: 56 QDQHAIENAKIRLAPFIEKGMVTFIKDNFRHLKERLNELGVTEIDGICYDLGVSSPQLDE 115 Query: 121 GDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS++K PLDMRM+ + ++A +VVN + DL RI GE+K + +IA I + Sbjct: 116 RERGFSYKKDAPLDMRMNQEASLTAYEVVNSYDYHDLVRIFFKYGEDKFSKQIARKIEQA 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 R P +TT +L+ +I K+ +K + HPA + FQA+RI VN+E+ + ++ A Sbjct: 176 RAIKPIETTTELAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMD 234 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPT 296 L G + V++FHSLEDRL K+ F S +V IP + P + + + +K ++P+ Sbjct: 235 LLALDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKM-ELVNRKPILPS 293 Query: 297 QEDVAFNRRSRSAKLRAGMR 316 +E++ N RS SAKLR + Sbjct: 294 EEELEENNRSHSAKLRVARK 313 >gi|209559798|ref|YP_002286270.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes NZ131] gi|262827234|sp|B5XML3|RSMH_STRPZ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|209540999|gb|ACI61575.1| S-adenosyl-methyltransferase mraW [Streptococcus pyogenes NZ131] Length = 316 Score = 170 bits (431), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 107/308 (34%), Positives = 173/308 (56%), Gaps = 12/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGS--NVIALDRDPFAVSCGQE 76 HV VLL + + +L+ P + +DAT G G+S K+G ++ D+D A+ Q Sbjct: 7 HVTVLLHETVDMLDIKPDGIYVDATLGGSGHSAYLLSKLGEEGHLYCFDQDQKAIDNAQV 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSG 131 T++ Y K Q + + F L+ + GVD G+++DLGVSS Q+D +RGFS+++ Sbjct: 67 TLKSYIDKGQVTFIKDNFRHLKARLTALGVDEIDGILYDLGVSSPQLDERERGFSYKQDA 126 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S ++A +VVN DL +I GE+K + +IA I + R P + T + Sbjct: 127 PLDMRMDRQSLLTAYEVVNTYPFNDLVKIFFKYGEDKFSKQIARKIEQARAIKPIEATTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ LI+ + + HPA + FQA+RI VN+E+ + ++ A + L G + V++ Sbjct: 187 LAELIKAAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQDAMELLALDGRISVIT 246 Query: 250 FHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDRL K+ F S V +IP + P F+ +++K ++P+ ++ N+R+ S Sbjct: 247 FHSLEDRLTKQLFKEASTVDVPKGLPLIPEDMKPK-FELVSRKPILPSHSELTANKRAHS 305 Query: 309 AKLRAGMR 316 AKLR + Sbjct: 306 AKLRVAKK 313 >gi|119897167|ref|YP_932380.1| S-adenosyl-methyltransferase MraW [Azoarcus sp. BH72] gi|263446774|sp|A1K3T8|RSMH_AZOSB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|119669580|emb|CAL93493.1| SAM dependent methyltransferase [Azoarcus sp. BH72] Length = 312 Score = 170 bits (431), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 120/306 (39%), Positives = 171/306 (55%), Gaps = 14/306 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQE 76 HV VLL + + L P + +D TFG GG+SR+ G +IA DRDP A++ GQ Sbjct: 7 HVSVLLTEAVDALAIKPEGIYVDGTFGRGGHSRAVLARLGAGGRLIAFDRDPAAIAAGQA 66 Query: 77 TMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + L A FS+ D + VDGV+ DLGVSS Q+D RG SF+ PL Sbjct: 67 IA---DPRLELVHAPFSEFAVVLDRLGVSAVDGVLLDLGVSSPQLDDASRGMSFRFDAPL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S G + ++ + +A+V ++T ++ GEE+ A IA AI R TT L+ Sbjct: 124 DMRMDTSRGRTVAEWLAEASVAEITEVIRDYGEERFAYAIAKAIAAARTGGAIATTGQLA 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++++K V + + HPATRSFQALRIF+N E+EEL L L GG L+V+SFHS Sbjct: 184 AIVEKAVRTREPGQ-HPATRSFQALRIFINQELEELTTVLPDCVARLSEGGRLVVISFHS 242 Query: 253 LEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 LEDR+VK+F +R ++ + + ++ P Q + K P + +VA N R+RSA Sbjct: 243 LEDRIVKRFLRDEARPPQLPSRLPVRAADLPPPRLQ-LVGKAQRPGEAEVAANPRARSAV 301 Query: 311 LRAGMR 316 +R R Sbjct: 302 MRVAER 307 >gi|317968143|ref|ZP_07969533.1| 16S rRNA m(4)C1402 methyltranserfase [Synechococcus sp. CB0205] Length = 292 Score = 170 bits (431), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 113/309 (36%), Positives = 166/309 (53%), Gaps = 34/309 (11%) Query: 21 VPVLLEKVIA-------LLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAV 71 +PVL +V+A LL G +++D T G GG+S + G ++ LD+DP A Sbjct: 1 MPVLAAQVLASFTALEPLLQERGGGLLIDCTLGGGGHSALLLEAHPGLKLVGLDQDPTAR 60 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E + + ++ S+ F+ DY P + V+ DLGVSS Q+D +RGFSF+ G Sbjct: 61 QAAAERLEPFGDRVSIVATNFA---DYQPQEPALAVMADLGVSSPQLDVAERGFSFRHDG 117 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTTQ 189 PLDMRM+ +G +A++++ + +L ++ GEE+ + RIA I + + PF T Sbjct: 118 PLDMRMNPQAGETAAELIERLEETELADLIYAYGEERLSRRIARKIKQHLAEQGPFAGTD 177 Query: 190 DLSSLIQKTVYFSK--NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 L+ L+ Y K RIHPATR+FQALRI VN+E+ L + L+ A L+ GGL+ V Sbjct: 178 ALAYLV-AGCYAPKARRGRIHPATRTFQALRIAVNDELGVLDRLLQQAPDWLEPGGLMGV 236 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +SFHSLEDR VK F+S Q +T+K +E+ + N RSR Sbjct: 237 ISFHSLEDRRVKTAFSSDE-----------------RLQRVTRKPETAGEEEQSSNPRSR 279 Query: 308 SAKLRAGMR 316 SAK R R Sbjct: 280 SAKWRVARR 288 >gi|269798180|ref|YP_003312080.1| S-adenosyl-methyltransferase MraW [Veillonella parvula DSM 2008] gi|269094809|gb|ACZ24800.1| S-adenosyl-methyltransferase MraW [Veillonella parvula DSM 2008] Length = 310 Score = 170 bits (431), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 108/308 (35%), Positives = 168/308 (54%), Gaps = 12/308 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 +H VLL + + + P + +D T G G++ + +M +I LD+D A+S + Sbjct: 4 NHTSVLLHETVDSVVTNPKGIYVDCTLGGAGHAHAVGEMLDPEGMIIGLDQDEDALSVAR 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + D K Q FS L++ + + G VDG +FDLGVSS Q+D +RGFS+ GP Sbjct: 64 QRLSDLKCQVLTIPTNFSNLKEALRNAGIYEVDGFIFDLGVSSYQLDTPERGFSYMNDGP 123 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM ++A ++VN+ + + L +I+ GEE+ A RI IV+ RQ TT +L Sbjct: 124 LDMRMDKDAPLTAEEIVNEYDSEQLLQIIRDYGEERWAKRIVEFIVEARQEKRITTTGEL 183 Query: 192 SSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+ + ++ + HPA R+FQA+RI VN E+ L A LK G + V++F Sbjct: 184 VRIIKNAIPAKARQDGPHPAKRTFQAIRIEVNRELAILHDSFVDAVSMLKPKGKIGVITF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 HSLEDR+ K+ F S + M N H AV ++ K + P+ ++ N R+RS Sbjct: 244 HSLEDRITKQTFKELSTACICPPQLPMCVCN-HKAVVKA-KNKAIEPSIGEIEVNPRARS 301 Query: 309 AKLRAGMR 316 AKLR ++ Sbjct: 302 AKLRVAVK 309 >gi|57650291|ref|YP_186055.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus COL] gi|151221301|ref|YP_001332123.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus str. Newman] gi|68565417|sp|Q5HGQ2|RSMH_STAAC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262826643|sp|A6QG79|RSMH_STAAE RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|57284477|gb|AAW36571.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus COL] gi|150374101|dbj|BAF67361.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus str. Newman] Length = 311 Score = 170 bits (431), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 104/306 (33%), Positives = 165/306 (53%), Gaps = 13/306 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+ V+L + I LN V +D T G G++ ++ +IA+D+D A+ +E Sbjct: 4 HISVMLNETIDYLNVKENGVYIDCTLGGAGHALYLLNQLNDDGRLIAIDQDQTAIDNAKE 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++D+ + + + F +L + D + VDG+ +DLGVSS Q+D +RGFS+ L Sbjct: 64 VLKDHLHRVTFVHSNFRELTQILKDLNIEKVDGIYYDLGVSSPQLDIPERGFSYHHDATL 123 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM ++A ++VN + + L +I GEEK + +IA I R+ P TT +L Sbjct: 124 DMRMDQTQELTAYEIVNNWSYEALVKIFYRYGEEKFSKQIARRIEAHREQQPITTTLELV 183 Query: 193 SLIQKTVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I++ + +K R HPA R FQALRI VN+E+ + A + +K G + V++F Sbjct: 184 DIIKEGIP-AKARRKGGHPAKRVFQALRIAVNDELSAFEDSIEQAIELVKVDGRISVITF 242 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 HSLEDRL K+ F R + IP P + + + +K + T+ED+ N R+RS Sbjct: 243 HSLEDRLCKQVFQEYEKGPEVPRGLPVIPEAYTPKL-KRVNRKPITATEEDLDDNNRARS 301 Query: 309 AKLRAG 314 AKLR Sbjct: 302 AKLRVA 307 >gi|329942720|ref|ZP_08291499.1| S-adenosyl-methyltransferase MraW [Chlamydophila psittaci Cal10] gi|332287316|ref|YP_004422217.1| S-adenosyl-methyltransferase [Chlamydophila psittaci 6BC] gi|313847900|emb|CBY16895.1| putative S-adenosyl-methyltransferase [Chlamydophila psittaci RD1] gi|325506769|gb|ADZ18407.1| S-adenosyl-methyltransferase [Chlamydophila psittaci 6BC] gi|328814980|gb|EGF84969.1| S-adenosyl-methyltransferase MraW [Chlamydophila psittaci Cal10] gi|328914560|gb|AEB55393.1| S-adenosyl-methyltransferase MraW [Chlamydophila psittaci 6BC] Length = 298 Score = 170 bits (431), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 115/302 (38%), Positives = 160/302 (52%), Gaps = 24/302 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI---ALDRDPFAVSCGQE 76 H+PVL+ + ++L K D T GAGG++ +F +++ A DRD A+S +E Sbjct: 7 HIPVLVNECLSLFANRNPKFFCDVTVGAGGHAEAFLSEYPSIVSYDASDRDSAALSLAKE 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ-KSGPLDM 135 + + ++ A+F L + DG++ DLGVSSMQ+D RGFSFQ LDM Sbjct: 67 RLEKFGDRVHFRHASFEDLSKDSKEHVYDGILADLGVSSMQLDNLSRGFSFQGDDHDLDM 126 Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM + GI+AS+V+N ++L +I GEE Q A A+V R+ T +DL Sbjct: 127 RMDVTKGITASEVLNTLREEELGKIFREYGEEPQWKNAASAVVHFRKRKKIITVRDLKDA 186 Query: 195 IQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 K + +IHP T FQALR++VN E +L L SA + L GG LI++SF S Sbjct: 187 TAKVFPSYRLRKKIHPLTLIFQALRVYVNQEDLQLKVFLESAMRWLAPGGRLIIISFCSS 246 Query: 254 EDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 EDR VK FF A +SG + +TKKVV+PT E+ N R RSAKL Sbjct: 247 EDRPVKWFFREAEKSG----------------LGTILTKKVVMPTYEETRKNPRCRSAKL 290 Query: 312 RA 313 R Sbjct: 291 RC 292 >gi|227874385|ref|ZP_03992569.1| S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Oribacterium sinus F0268] gi|227839793|gb|EEJ50239.1| S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Oribacterium sinus F0268] Length = 311 Score = 170 bits (431), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 103/307 (33%), Positives = 169/307 (55%), Gaps = 9/307 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGS--NVIALDRDPFAVSCGQE 76 H +++E+ + LN + +D T G GG+S ++G +I +D+D A+ E Sbjct: 5 HKSIMVEECMEGLNIKKDGIYVDGTLGGGGHSFHILERLGEKGQLIGIDQDEDAILAATE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ + +Q + + + + + + VDG++ DLGVSS Q D +RGFS++ PL Sbjct: 65 RLKPFAKQLHIIRDNYEHFPEILSSLSIEKVDGILLDLGVSSHQFDEEERGFSYRFDAPL 124 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM SA D+VN + L I+ GE+K A IA IV RQ P +TT++L+ Sbjct: 125 DMRMDQRQDFSAKDLVNSYSESSLFHIIRDYGEDKFAKNIAKHIVLARQEKPIETTKELA 184 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I + + HPA R+FQA+RI +N E+E L L+S +AL GG + ++SFH Sbjct: 185 EIISHAIPMKFRLQGGHPAKRTFQAIRIALNRELEVLENSLKSMIEALNPGGRICIISFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK+ F + + + ++ + I++K + P++E++ N R++SAK Sbjct: 245 SLEDRIVKRSFKEAENPCICPPDFPVCTCGRKSLGKVISRKAICPSEEEMEENPRAKSAK 304 Query: 311 LRAGMRT 317 LR RT Sbjct: 305 LRIFERT 311 >gi|225867991|ref|YP_002743939.1| S-adenosyl-methyltransferase MraW [Streptococcus equi subsp. zooepidemicus] gi|262827289|sp|C0MGV8|RSMH_STRS7 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|225701267|emb|CAW98245.1| S-adenosyl-methyltransferase MraW [Streptococcus equi subsp. zooepidemicus] Length = 316 Score = 170 bits (431), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 108/309 (34%), Positives = 173/309 (55%), Gaps = 14/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HV VLL + + +L+ P + +DAT G G+S + ++ D+D A+ QE Sbjct: 7 HVTVLLHEAVDMLDIKPDGIYVDATLGGSGHSAYLLSLLGDKGHLYCFDQDQKAIDHAQE 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++ Y K Q + + F L+ + + GV DG+++DLGVSS Q+D +RGFS+++ Sbjct: 67 QLKPYIDKGQVTFIKDNFRHLKVRLLEHGVTEIDGILYDLGVSSPQLDERERGFSYKQDA 126 Query: 132 PLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S + ++A +VVN + DL RI GE+K + +IA I + R P TT + Sbjct: 127 PLDMRMDSQAALTAYEVVNTYDFNDLVRIFFKYGEDKFSKQIARKIEQARAIKPISTTTE 186 Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L++LI K+ +K + HPA + FQA+RI VN+E+ ++ A + L G + V+ Sbjct: 187 LAALI-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADASIQQAIELLALDGRISVI 245 Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K F S IP P + + +++K ++P+Q+++ N R+ Sbjct: 246 TFHSLEDRLTKHLFKEASTADAPKGLPFIPDELKPKL-ELVSRKPILPSQKELMANNRAH 304 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 305 SAKLRVARK 313 >gi|118587349|ref|ZP_01544775.1| cell division protein MraW [Oenococcus oeni ATCC BAA-1163] gi|118432173|gb|EAV38913.1| cell division protein MraW [Oenococcus oeni ATCC BAA-1163] Length = 314 Score = 170 bits (431), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 108/303 (35%), Positives = 167/303 (55%), Gaps = 10/303 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77 HV V L + + L + +DAT G GG++ K + +V + D+D A+ ++ Sbjct: 7 HVTVFLRQAVENLAVKTNGIYVDATLGGGGHTDLLLKKALHGHVYSFDQDENAIDFNKKR 66 Query: 78 M-RDYKE-QFSLFQATFSQL---QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 ++ E + SL + F L + + +DG+VFDLGVSS Q D RGFS++ Sbjct: 67 FSKEISEGRLSLIHSNFQNLIKELNLLKVFAIDGIVFDLGVSSPQFDDEKRGFSYRSDAR 126 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S + A +VN KDL I+ GEEK AS IA I+KRR+ P TT++L Sbjct: 127 LDMRMDQSQSLDAYQIVNTWEYKDLASIINRYGEEKFASSIARKIIKRREVQPIITTEEL 186 Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 I++ + + + HPA ++FQA+RI VN+E+ L + L+ A + L GG + V++F Sbjct: 187 VETIKEALPDKILHKKGHPAKKTFQAIRIAVNDELNVLQEALKQASQLLNRGGRISVITF 246 Query: 251 HSLEDRLVKKFFASRSGK-VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK FF + K + + +P F+ +TK ++P+ E++ N R+ SA Sbjct: 247 QSLEDRIVKHFFNQLATKNQLPSKLPVPDKFIQEEFKLLTKHPIIPSVEEIEENHRAHSA 306 Query: 310 KLR 312 K R Sbjct: 307 KFR 309 >gi|295111738|emb|CBL28488.1| S-adenosyl-methyltransferase MraW [Synergistetes bacterium SGP1] Length = 303 Score = 170 bits (431), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 110/306 (35%), Positives = 169/306 (55%), Gaps = 25/306 (8%) Query: 20 HVPVLLEKVIALLNPA--PGKV--ILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73 H PVLL +V++ L+ A P + I+D T G GGYS + + V +DRDP A+ Sbjct: 4 HEPVLLPEVLSFLSEASEPRRALRIVDGTLGLGGYSEAILRAFPDGRVWGVDRDPDALRL 63 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + + +F A F + + + D VFDLGVS++Q+ RGFSFQ+ GP Sbjct: 64 AKGRLSAFAPRFCAVHANFGDIAGVLEGEAPFDAFVFDLGVSNLQLTEAARGFSFQQDGP 123 Query: 133 LDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR-QSAPFQTTQ 189 LDMRM G SA++V++ + +L RI G+E+ + RIA+ I++RR + +TT Sbjct: 124 LDMRMDPGGGAPSAAEVLSGLSADELARIFWEYGDERYSRRIANGIIQRRARGLRLETTG 183 Query: 190 DLSSLIQKTVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L +LI++ + ++ HPA R FQALRIFVN+E+ + L + G + +V Sbjct: 184 ELVTLIREVLPAPVQRKMGTHPARRVFQALRIFVNDELSAIESMLATLPTLAGEGCVAVV 243 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 VS+HSLEDR+VK F S + +++T+ ++P +E+ N RSR Sbjct: 244 VSYHSLEDRIVKHRFRS-------------WEKEKGLGRALTRHPLLPQEEERTRNYRSR 290 Query: 308 SAKLRA 313 SAKLRA Sbjct: 291 SAKLRA 296 >gi|322516106|ref|ZP_08069041.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus vestibularis ATCC 49124] gi|322125401|gb|EFX96751.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus vestibularis ATCC 49124] Length = 316 Score = 170 bits (431), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 110/309 (35%), Positives = 171/309 (55%), Gaps = 14/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 HV VLL + + +L+ P + +DAT G G+S S ++ D+D A+ Q Sbjct: 7 HVTVLLHETVDMLDIKPDGIYVDATLGGAGHSSYLLSQLSEKGHLYCFDQDQKAIDNAQV 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++DY K + + F L+ + GV DG+++DLGVSS Q+D +RGFS+++ Sbjct: 67 RLKDYIDKGMVTFIKDNFRNLRSNLEALGVSEIDGILYDLGVSSPQLDERERGFSYKQDA 126 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM+ + ++A +VVN DL RI GE+K + +IA I + RQ P +TT + Sbjct: 127 KLDMRMNEEASLTAYEVVNTYPYNDLVRIFFKYGEDKFSKQIARKIEQARQVKPIETTTE 186 Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ +I K+ +K + HPA + FQA+RI VN+E+ + ++ A L G + V+ Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQEALDLLAVDGRISVI 245 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F S V IP + P V + +K ++P+QE++ N RS Sbjct: 246 TFHSLEDRLTKQLFKEASTVDVPKGLPFIPEDLQPKV-ALVNRKPILPSQEELEANNRSH 304 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 305 SAKLRVAKK 313 >gi|258654059|ref|YP_003203215.1| S-adenosyl-methyltransferase MraW [Nakamurella multipartita DSM 44233] gi|258557284|gb|ACV80226.1| S-adenosyl-methyltransferase MraW [Nakamurella multipartita DSM 44233] Length = 348 Score = 170 bits (431), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 106/303 (34%), Positives = 167/303 (55%), Gaps = 19/303 (6%) Query: 20 HVPVLLEKVIALLNPA---------PGKVILDATFGAGGYSRSFCKMGSN--VIALDRDP 68 H+PVL+++V LL PA V++DAT G GG++ + + V+ +DRDP Sbjct: 27 HIPVLVDRVDQLLAPAIEAATADGATDVVLVDATLGMGGHTLALLQAHPRLRVVGIDRDP 86 Query: 69 FAVSCGQE--TMRDYKEQFSLFQATFSQLQDY----VPDKGVDGVVFDLGVSSMQIDCGD 122 A+S ++ T ++ L A + ++ + V V V+FDLGVSS+Q+D D Sbjct: 87 QALSIAEQRITAAGLADRVELVHAVYDRIGEVIAATVASGRVQAVLFDLGVSSVQLDEAD 146 Query: 123 RGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGF++ + PLDMRM SGI+A++V+N ++TRIL GEE+ A RIA A+V R Sbjct: 147 RGFAYAQDAPLDMRMDPTSGITAAEVINTYPGAEITRILREYGEERFAQRIARAVVTERA 206 Query: 182 SAPFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 PF T+ L L++ + ++ +PA R+FQALRI VN+E+ L + + SA + L Sbjct: 207 KRPFTTSARLVELVRANIPAAARRTGGNPAKRTFQALRIEVNDELGALQRAIPSALQHLS 266 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300 G ++V+S+ SLEDR+VK+ A + + H F+ + + PT E++ Sbjct: 267 VAGRIVVMSYQSLEDRIVKRAIAPLTLSRTPLDLPTELPGHDPEFRWVVRGSQAPTDEEI 326 Query: 301 AFN 303 N Sbjct: 327 QAN 329 >gi|283769659|ref|ZP_06342555.1| S-adenosyl-methyltransferase MraW [Bulleidia extructa W1219] gi|283103927|gb|EFC05313.1| S-adenosyl-methyltransferase MraW [Bulleidia extructa W1219] Length = 318 Score = 170 bits (431), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 107/306 (34%), Positives = 169/306 (55%), Gaps = 11/306 (3%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCG 74 + +H+ VLLE+ + L P + +DAT G G+S K ++ + D+D A+ Sbjct: 1 MSEHISVLLEESLEALKILPEGIYVDATLGRAGHSVEILKKLTTGHLYSFDKDQQAIEEC 60 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++ Y E+ +L A FS++ + + GV DG++FDLGVSS Q D GDRGFS++ Sbjct: 61 SLKLKSYAEKVTLIHADFSKMMEKLQSLGVEKVDGILFDLGVSSPQFDQGDRGFSYRFEA 120 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM S + A VVN + K+L I EE+ A IA+ I + R+ P +TT + Sbjct: 121 RLDMRMDQSQDLDAYQVVNHYSAKELKDIFLKYSEERYAPMIANKICEIRERKPIETTFE 180 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L ++++ + + + HPA + FQA+R+ VN+E+ L Q L A LK GG L V+S Sbjct: 181 LVNIVKSCLPAKELRKKKHPAKQVFQAIRMEVNDELGTLEQALNQACSLLKEGGRLAVIS 240 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIP---SNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 FHS+EDR+VK + ++ +P + A F+ + KK ++ + ++ N R+ Sbjct: 241 FHSIEDRMVKTIL-KKHCEIEKPDPRLPIRFEDIQQADFRLVYKKPILAKEAELENNHRA 299 Query: 307 RSAKLR 312 SAKLR Sbjct: 300 HSAKLR 305 >gi|302344989|ref|YP_003813342.1| S-adenosyl-methyltransferase MraW [Prevotella melaninogenica ATCC 25845] gi|302149179|gb|ADK95441.1| S-adenosyl-methyltransferase MraW [Prevotella melaninogenica ATCC 25845] Length = 314 Score = 170 bits (431), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 113/302 (37%), Positives = 174/302 (57%), Gaps = 13/302 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAV-SCGQ 75 H+PVLL + I LN V +D TFG GG+SR S S++ + D+D A + Sbjct: 9 HIPVLLNESIEGLNLHANGVYVDVTFGGGGHSREILSRLAEDSHLYSFDQDADAEQNIDN 68 Query: 76 ETMRDYK-EQFSLFQATFSQLQDYVP--DKG-VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + D + ++F+ ++ F L++++ D G +DG++ DLGVSS D RGFSF+ Sbjct: 69 MGLSDEQVDRFTFVRSNFRYLKNWMRYYDVGYIDGLLADLGVSSHHFDDETRGFSFRFEA 128 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ +GI+A+D++N + + L IL + GE KQ+ RIA AIVK R ++TT D Sbjct: 129 PLDMRMNKRAGITAADILNDYDEERLADILYLYGELKQSRRIASAIVKARGQKTYKTTND 188 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L + I+ +F + + FQALRI VN+E++ L + L +A + L+ GG L V+++ Sbjct: 189 LLTTIEP--FFQRAREKKDMAKMFQALRIEVNHEMDALKEMLMAATELLRPGGRLSVITY 246 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDR+VK S + + + P F+ + KV+ + ++ N RSRSAK Sbjct: 247 HSLEDRMVKNIMKSGNIEGKVKQDFFGRIETP--FRLVNNKVITASNDEQERNPRSRSAK 304 Query: 311 LR 312 LR Sbjct: 305 LR 306 >gi|298491041|ref|YP_003721218.1| S-adenosyl-methyltransferase MraW ['Nostoc azollae' 0708] gi|298232959|gb|ADI64095.1| S-adenosyl-methyltransferase MraW ['Nostoc azollae' 0708] Length = 301 Score = 170 bits (431), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 111/299 (37%), Positives = 174/299 (58%), Gaps = 30/299 (10%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 HVPVL ++VI L +P LD T G GG+SR + +V A+D+D A+ + Sbjct: 18 HVPVLSQQVIGGLVVSPRGNYLDLTVGGGGHSRLILETAEDVKVTAVDQDEDALKAAKAN 77 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 + ++ ++ + + F+ D+ P+ G++ DLGVSS +D +RGFSF+ + LDMRM Sbjct: 78 LAEFGDRVNFIHSNFANY-DFPPNT-YHGILADLGVSSYHLDNPERGFSFRNTANLDMRM 135 Query: 138 SCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 + ++A D++N + +L I GEE+ + RIA IV++R PF TT +L+++I Sbjct: 136 NQQQFLTAGDIINNWDEGELADIFFKYGEERLSRRIARRIVEKR---PFHTTTELANVIA 192 Query: 197 KTV---YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 +V Y + R+HPATR FQALRI VN+E++ L + A +L GG + ++SFHSL Sbjct: 193 YSVPPKY--RYGRLHPATRVFQALRIVVNDELKVLETLIDKAPHSLVPGGRIAIISFHSL 250 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 EDRLVK +R++ ++ Q +TKK ++ T+ ++ N RSRSAKLR Sbjct: 251 EDRLVKH----------GLRNL-------SLLQVLTKKPILGTESEITENLRSRSAKLR 292 >gi|289810554|ref|ZP_06541183.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 231 Score = 170 bits (431), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 93/222 (41%), Positives = 139/222 (62%), Gaps = 12/222 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + LN P + +D TFG GG+SR ++G ++A+DRDP A++ Q Sbjct: 7 HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAQ- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 T+ D + FS+ FS L DYV ++ +DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 66 TINDPR--FSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G SA++ + A D+ +L GEE+ A RIAHAIV+R + P T++L Sbjct: 124 LDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIAHAIVERNREQPMTRTKEL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLR 233 + ++ K+ HPATR+FQA+RI+VN+E+EE+ Q + Sbjct: 184 AEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQATK 224 >gi|189485180|ref|YP_001956121.1| SAM-dependent methyltransferase [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|263504473|sp|B1GZH8|RSMH_UNCTG RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|170287139|dbj|BAG13660.1| SAM-dependent methyltransferase [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 291 Score = 170 bits (431), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 110/304 (36%), Positives = 166/304 (54%), Gaps = 23/304 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 H+PV+ + L PG + +D TFG GG++ ++ +A D D + E Sbjct: 3 HIPVMPLETSRYLIGKPGGLYVDCTFGGGGHALYLLDKFKDIKIVAFDWDEDSSKRFIER 62 Query: 78 MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 +++ + + + F ++ + VDG++ D+GVSS Q DRGFSF SG LD Sbjct: 63 EKEFSGRVTFIRDNFKNVKKALSALNISKVDGILADIGVSSKQFGDLDRGFSFN-SGTLD 121 Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM +G A +VVN + +DL I GEE+++ +IA AI+ RR+ T +L + Sbjct: 122 MRMDKRNGFEAKEVVNSYSYEDLADIFYKYGEERKSRQIASAILLRRKRGIINTASELQT 181 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 +I RI+PAT+ FQALRIFVN+E+E LA L A + L AGG +++SFHSL Sbjct: 182 VICSVK--RPEGRINPATKVFQALRIFVNSELENLAVLLSDAPELLNAGGRTVIISFHSL 239 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 EDR+VK+ F N+ +++ +TKKVV +E+V N SRSA++RA Sbjct: 240 EDRIVKQNF--------------KRNSECGIYKILTKKVVTALKEEVKINPGSRSARIRA 285 Query: 314 GMRT 317 +T Sbjct: 286 AEKT 289 >gi|258423777|ref|ZP_05686663.1| methylase MraW [Staphylococcus aureus A9635] gi|257846009|gb|EEV70037.1| methylase MraW [Staphylococcus aureus A9635] Length = 311 Score = 170 bits (431), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 104/306 (33%), Positives = 165/306 (53%), Gaps = 13/306 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+ V+L + I LN V +D T G G++ ++ +IA+D+D A+ +E Sbjct: 4 HISVMLNETIDYLNVKENGVYIDCTLGGAGHALYLLNQLNDDGRLIAIDQDQTAIDNAKE 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++D+ + + + F +L + D + VDG+ +DLGVSS Q+D +RGFS+ L Sbjct: 64 VLKDHLHKVTFVHSNFRELTQILKDLNIEKVDGIYYDLGVSSPQLDIPERGFSYHHDATL 123 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM ++A ++VN + + L +I GEEK + +IA I R+ P TT +L Sbjct: 124 DMRMDQTQELTAYEIVNNWSYEALVKIFYRYGEEKFSKQIARRIEAHREQQPITTTLELV 183 Query: 193 SLIQKTVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I++ + +K R HPA R FQALRI VN+E+ + A + +K G + V++F Sbjct: 184 DIIKEGIP-AKARRKGGHPAKRVFQALRIAVNDELSAFEDSIEQAIELVKVEGRISVITF 242 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 HSLEDRL K+ F R + IP P + + + +K + T+ED+ N R+RS Sbjct: 243 HSLEDRLCKQVFQEYEKGPEVPRGLPVIPEAYTPKL-KRVNRKPITATEEDLDDNNRARS 301 Query: 309 AKLRAG 314 AKLR Sbjct: 302 AKLRVA 307 >gi|329117643|ref|ZP_08246360.1| S-adenosyl-methyltransferase MraW [Streptococcus parauberis NCFD 2020] gi|326908048|gb|EGE54962.1| S-adenosyl-methyltransferase MraW [Streptococcus parauberis NCFD 2020] Length = 316 Score = 170 bits (430), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 108/309 (34%), Positives = 172/309 (55%), Gaps = 14/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQE 76 H+ VLL + + +LN P + +DAT G G+S ++ N + D+D A+ Q Sbjct: 7 HITVLLNETVDMLNVKPDGIYVDATLGGAGHSAYLLSQLNENGHLYCFDQDQKAIDNAQV 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++ + K Q + + F L+ + GV DG+++DLGVSS Q+D +RGFS+++ Sbjct: 67 FLKPFIDKGQVTFIKDNFRNLKSRLASLGVTEIDGILYDLGVSSPQLDERERGFSYRQDA 126 Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM ++A VVN DL RI GE+K + +IA I + R+ P +TT + Sbjct: 127 PLDMRMDTEAELTAYQVVNHYAFNDLVRIFFRYGEDKFSKQIARKIEQAREIKPIETTAE 186 Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ LI K+ +K + HPA + FQA+RI VN+E+ + ++ A L G + V+ Sbjct: 187 LAELI-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAAEESIQQAMDILALDGRISVI 245 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F S V +IP + P F+ +++K ++P+ E++ N R+ Sbjct: 246 TFHSLEDRLTKQLFKEASTVDVPKNIPIIPEHLQPK-FELVSRKPILPSLEELEANNRAH 304 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 305 SAKLRVARK 313 >gi|70726737|ref|YP_253651.1| S-adenosyl-methyltransferase MraW [Staphylococcus haemolyticus JCSC1435] gi|88909220|sp|Q4L5N0|RSMH_STAHJ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|68447461|dbj|BAE05045.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 311 Score = 170 bits (430), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 103/305 (33%), Positives = 165/305 (54%), Gaps = 11/305 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+ V+L + I L+ + +D T G G++ ++ +IA+D+D A+ +E Sbjct: 4 HISVMLNETIDYLDIKEDGIYVDCTLGGAGHALYLLNQLNDDGRLIAIDQDTTALDNAKE 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++D+ + + + F +L D + + + VDG+ +DLGVSS Q+D +RGFS+ L Sbjct: 64 VLKDHLHKVTFVHSNFRELTDILKNLNIEKVDGIYYDLGVSSPQLDVPERGFSYHHDAKL 123 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM +SA +VVNQ + L +I GEEK + +IA I R+ P +TT +L Sbjct: 124 DMRMDQTQQLSAYEVVNQWPYEALVKIFYRYGEEKFSKQIARRIETHREHQPIETTLELV 183 Query: 193 SLIQKTVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I++ + +K R HPA R FQA+RI VN+E+ + A + +K GG + V++F Sbjct: 184 DIIKEGIP-AKARRKGGHPAKRVFQAIRIAVNDELSAFEDSIEQAIELVKVGGRISVITF 242 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDRL K+ F R + I A+ + + +K + T D+ N R+RSA Sbjct: 243 HSLEDRLCKQMFQEYEKGPDVPRGLPIIPEAYTPKLKRVNRKPITATDTDLDENNRARSA 302 Query: 310 KLRAG 314 KLR Sbjct: 303 KLRVA 307 >gi|256384076|gb|ACU78646.1| S-adenosyl-methyltransferase MraW [Mycoplasma mycoides subsp. capri str. GM12] gi|256384908|gb|ACU79477.1| S-adenosyl-methyltransferase MraW [Mycoplasma mycoides subsp. capri str. GM12] gi|296455289|gb|ADH21524.1| S-adenosyl-methyltransferase MraW [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 308 Score = 170 bits (430), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 107/303 (35%), Positives = 165/303 (54%), Gaps = 15/303 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+PVLL++ I LN P + +D T G G+S K + + A+D+D A+ +E Sbjct: 4 HIPVLLKESIEYLNIKPDGIYVDCTLGRAGHSSEILKKLNQKGFLYAIDQDQIAIDQAKE 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + F L Q FS L + VDG+++DLGVSS QID RGFS++ GPL Sbjct: 64 KLEQINNNFLLIQGNFSNLSALLAINHVFNVDGILYDLGVSSPQIDIASRGFSYKMDGPL 123 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S ++A V+N + ++ IL GEE + I+ IV+ R P +T +L Sbjct: 124 DMRMDLNSTLTAHQVINTYSESQISEILFKYGEESFSKSISKKIVESR---PINSTLELV 180 Query: 193 SLIQKTVYFSK--NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I K+V K + HPA ++FQALRI++NNE+ L L+ A L + + V++F Sbjct: 181 EII-KSVLPQKVLKQKKHPAKKTFQALRIYINNELIALENSLKQALDLLNSKARICVITF 239 Query: 251 HSLEDRLVKKFFASRSGKVMA-VRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRS 308 HSLE+++VK F + + + +P A+ + F+ + KK + P+ ++ N RS S Sbjct: 240 HSLEEKIVKNIFNNSTNYYQEQLLSNLPIKANLNSKFKLVIKKPIKPSLLELEQNHRSHS 299 Query: 309 AKL 311 AKL Sbjct: 300 AKL 302 >gi|302332784|gb|ADL22977.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus JKD6159] Length = 311 Score = 170 bits (430), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 100/304 (32%), Positives = 163/304 (53%), Gaps = 9/304 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+ V+L + I LN V +D T G G++ ++ +IA+D+D A+ +E Sbjct: 4 HISVMLNETIDYLNVKENGVYIDCTLGGAGHALYLLNQLNDDGRLIAIDQDQAAIDNAKE 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++D+ + + + F +L + D + VDG+ +DLGVSS Q+D +RGFS+ L Sbjct: 64 VLKDHLHKVTFVHSNFRELTQILKDLNIEKVDGIYYDLGVSSPQLDIPERGFSYHHDATL 123 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM ++A ++VN + + L +I GEEK + +IA I R+ P TT +L Sbjct: 124 DMRMDQTQELTAYEIVNNWSYEALVKIFYRYGEEKFSKQIARRIEAHREQQPITTTLELV 183 Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I++ + ++ HPA R FQALRI VN+E+ + A + +K G + V++FH Sbjct: 184 DIIKEGIPAKARRKGGHPAKRVFQALRIAVNDELSAFEDSIEQAIELVKVDGRISVITFH 243 Query: 252 SLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDRL K+ F R + + A+ + + +K + T+ED+ N R+RSAK Sbjct: 244 SLEDRLCKQVFQEYEKGPEVPRGLPVVPEAYTPKLKRVNRKPITATEEDLDDNNRARSAK 303 Query: 311 LRAG 314 LR Sbjct: 304 LRVA 307 >gi|303235618|ref|ZP_07322225.1| S-adenosyl-methyltransferase MraW [Prevotella disiens FB035-09AN] gi|302484065|gb|EFL47053.1| S-adenosyl-methyltransferase MraW [Prevotella disiens FB035-09AN] Length = 310 Score = 170 bits (430), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 112/301 (37%), Positives = 167/301 (55%), Gaps = 12/301 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 HVPVLL++ I LN P V +D TFG GG+S+ S ++ + D+D A + Sbjct: 9 HVPVLLKESIDGLNINPDGVYVDVTFGGGGHSKEILSRLSKKGHLYSFDQDADAEQNIKG 68 Query: 77 TMRDYK-EQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 K E F+ ++ F L++++ GV DG++ DLGVSS D +RGFSF+ P Sbjct: 69 INNIEKLENFTFVRSNFRYLKNWLRYYGVEQIDGLLGDLGVSSHHFDDEERGFSFRFDAP 128 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ +G +A+D++ Q +DL + + GE K + +IA AIV R++ P TT+D Sbjct: 129 LDMRMNKRAGKTAADILLQYEEEDLANMFYLYGELKNSRKIAAAIVNSRKTKPILTTKDF 188 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 S+++ F + + FQALRI VN E+ L + L A + LK G L V+++H Sbjct: 189 QSVVEPL--FKREREKKEMAKLFQALRIEVNQEMAALKEMLIGASEVLKPNGRLSVITYH 246 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+VK + + + + P F+ I KV+VP+Q + N RSRSAKL Sbjct: 247 SLEDRIVKNIMKTGNIEGKVEQDFFGKINSP--FKLINNKVIVPSQSEQKENPRSRSAKL 304 Query: 312 R 312 R Sbjct: 305 R 305 >gi|328948458|ref|YP_004365795.1| ribosomal RNA small subunit methyltransferase H [Treponema succinifaciens DSM 2489] gi|328448782|gb|AEB14498.1| Ribosomal RNA small subunit methyltransferase H [Treponema succinifaciens DSM 2489] Length = 340 Score = 170 bits (430), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 104/305 (34%), Positives = 169/305 (55%), Gaps = 13/305 (4%) Query: 20 HVPVLLEKVIALLNP-----APGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVS 72 H PVLL + + L+P ++D+T G GG+S +F K ++ LD D + Sbjct: 18 HTPVLLNECLKFLSPIGEPFEKDAFMIDSTLGEGGHSFNFLKKFPTLKILGLDADSVIQA 77 Query: 73 CGQETMRDYKEQFSLFQATFSQLQ-DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +E + ++ E+ + F+ +Y ++ D ++FDLG+S + RGFSF+ Sbjct: 78 RAKERLSEFGERMKFYNGWFNDFYCNYSEERKPDLILFDLGISVFHYEKSGRGFSFRHDE 137 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMR++ + SA+D+VN+ +L ++ + +EK + RIA AIV R+S +T+ Sbjct: 138 ELDMRLNADTKESATDIVNEMPEDELANMIYLYSDEKYSRRIASAIVSARKSQKIVSTKA 197 Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I V K IHPATR+FQALRI VN+E++ L + + +A L GG + V++ Sbjct: 198 LADIIFNAVPSKYKYGNIHPATRTFQALRILVNSELKRLPEAIHAAFNVLAPGGKIGVIT 257 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 FHSLEDR+VK +F + + + R P + +T+K V P++E++ N SR Sbjct: 258 FHSLEDRIVKNYFRNLGKQCVCPREFPECVCGGTPCA-EILTRKPVEPSEEEIKANSPSR 316 Query: 308 SAKLR 312 SAKLR Sbjct: 317 SAKLR 321 >gi|301063241|ref|ZP_07203790.1| S-adenosyl-methyltransferase MraW [delta proteobacterium NaphS2] gi|300442669|gb|EFK06885.1| S-adenosyl-methyltransferase MraW [delta proteobacterium NaphS2] Length = 341 Score = 170 bits (430), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 107/309 (34%), Positives = 174/309 (56%), Gaps = 16/309 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76 HVPVLL++ + LN P + +D T G+GG+S S S+++ LD+DP A+ ++ Sbjct: 34 HVPVLLQEAVRYLNLKPEGIYVDGTVGSGGHSMEILSHLPENSSLVCLDQDPDAIRLSRK 93 Query: 77 TMR-DYKEQFSLFQATFSQL----QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +R D + QF A F+ L QD ++ +DG++ DLG+SS QI+ RGFSF + Sbjct: 94 RLRSDNRVQF--IHANFADLGRVMQDLAINR-IDGILLDLGMSSYQIEKSGRGFSFSREE 150 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ + D++N +++ L +L GEE++ +A AIV+ R+ +T Sbjct: 151 PLDMRMNPDHKPTGMDLINSLSLESLQALLREYGEEQKFKTLARAIVRARERETIKTASQ 210 Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I++ S + + HPAT++FQA+RI +N E+E L L+ + GG L+V+S Sbjct: 211 LAHIIEEATPKSHRPWKRHPATKTFQAVRIAINKEMESLETFLQEIPSLMAVGGRLVVIS 270 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNA--HPAVFQSITKKVVVPTQEDVAFNRRSR 307 +HSLEDR +K+ K P A +F+ + K+ + P + ++ FN R+R Sbjct: 271 YHSLEDRQIKRAMVQWE-KTCTCPPDFPVCACQKTRIFKRVFKRGLKPDEREIHFNPRAR 329 Query: 308 SAKLRAGMR 316 SA +R R Sbjct: 330 SAIMRVAER 338 >gi|261855063|ref|YP_003262346.1| S-adenosyl-methyltransferase MraW [Halothiobacillus neapolitanus c2] gi|261835532|gb|ACX95299.1| S-adenosyl-methyltransferase MraW [Halothiobacillus neapolitanus c2] Length = 317 Score = 170 bits (430), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 107/255 (41%), Positives = 152/255 (59%), Gaps = 10/255 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H VLL + + L V LDATFG GG+S + +N + A DRD A++ G E Sbjct: 17 HETVLLNEAVEALAVRADGVYLDATFGRGGHSAAILAKLNNHGRLFATDRDLRALAAG-E 75 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F + A FS ++ G VDGV+FDLGVSS QID +RGFSFQ++GP Sbjct: 76 ALASKDARFQIHHAAFSTAAQWLASMGLQGKVDGVLFDLGVSSPQIDEAERGFSFQQNGP 135 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ +G +A++ + +A +++ +L LG+EK + RIA IV+ R + P TT DL Sbjct: 136 LDMRMNQHAGETAAEWLAEAEEEEIANVLYRLGDEKFSRRIARRIVETRAAQPLATTFDL 195 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 I + ++ R HPATRSFQA+R+ +N E++E++ L L GG L+V+SFH Sbjct: 196 VRCIVEATP-RRDPRKHPATRSFQAIRLHINRELDEISAALSQVVDLLSIGGRLVVISFH 254 Query: 252 SLEDRLVKKFFASRS 266 SLEDR+VK F S Sbjct: 255 SLEDRIVKNFIRDES 269 >gi|289551038|ref|YP_003471942.1| S-adenosyl-methyltransferase MraW [Staphylococcus lugdunensis HKU09-01] gi|315658534|ref|ZP_07911406.1| S-adenosyl-methyltransferase MraW [Staphylococcus lugdunensis M23590] gi|289180570|gb|ADC87815.1| S-adenosyl-methyltransferase MraW [Staphylococcus lugdunensis HKU09-01] gi|315496863|gb|EFU85186.1| S-adenosyl-methyltransferase MraW [Staphylococcus lugdunensis M23590] Length = 311 Score = 170 bits (430), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 105/306 (34%), Positives = 165/306 (53%), Gaps = 13/306 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 HV V+L + I LN P V +D T G G++ ++ +IA+D+D A+ +E Sbjct: 4 HVSVMLNETIDYLNIKPDGVYVDCTLGGAGHALYLLNQLNDEGHLIAIDQDTTAIDNAKE 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ + + + F +L + + + VDG+ +DLGVSS Q+D +RGFS+ L Sbjct: 64 VLKAHLHKVTFVHNNFRELTHILKELNIEKVDGIYYDLGVSSPQLDVPERGFSYHHDAKL 123 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM +SA +VVN+ + + L +I GEEK + +IA I R+ P +TT L Sbjct: 124 DMRMDRTQTLSAYEVVNEWSYEALVKIFYRYGEEKFSKQIARRIEAHRELQPIETTLQLV 183 Query: 193 SLIQKTVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I++ + +K R HPA R FQA+RI VN+E+ + A + +K G + V++F Sbjct: 184 DVIKEGIP-AKARRKGGHPAKRVFQAIRIAVNDELSAFEDSIEQAIELVKVNGRISVITF 242 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 HSLEDRL K+ F R + IP P + + + +K + T+ED+ N R+RS Sbjct: 243 HSLEDRLCKQIFQEYEKGPEVPRGLPIIPEEYTPKL-KRVNRKPITATEEDLNQNNRARS 301 Query: 309 AKLRAG 314 AKLR Sbjct: 302 AKLRVA 307 >gi|270295456|ref|ZP_06201657.1| methylase MraW [Bacteroides sp. D20] gi|317478454|ref|ZP_07937614.1| MraW methylase [Bacteroides sp. 4_1_36] gi|270274703|gb|EFA20564.1| methylase MraW [Bacteroides sp. D20] gi|316905343|gb|EFV27137.1| MraW methylase [Bacteroides sp. 4_1_36] Length = 306 Score = 170 bits (430), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 108/306 (35%), Positives = 167/306 (54%), Gaps = 16/306 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76 H+PVLL + +N P +D TFG GG+SR S + G +++ D+D A E Sbjct: 8 HIPVLLMPSVDAMNIRPDGTYVDVTFGGGGHSREILSRLEDGGRLLSFDQDEDA-----E 62 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 F+ ++ F L +++ G VD ++ DLGVSS D +RGFSF+ G L Sbjct: 63 RNIVNNPHFTFVRSNFRYLHNFLRYHGIEKVDAILADLGVSSHHFDDSERGFSFRFDGAL 122 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +G++A+D+VN + L I + GE K + ++A IVK R + T + Sbjct: 123 DMRMNKRAGLTAADIVNTYEEEKLADIFYLYGELKNSRKLASVIVKARATQRIATIGEFL 182 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +++ F + + FQALRI VN E+E L + L +A +ALK GG L+V+++HS Sbjct: 183 EIVKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLYAATEALKPGGRLVVITYHS 240 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK + + + A + + P F+ + KV+VP +E++ N RSRSAKLR Sbjct: 241 LEDRMVKNIMKTGNVEGKAEKDFFGNVLTP--FRLVNNKVIVPDEEEIERNPRSRSAKLR 298 Query: 313 AGMRTV 318 R + Sbjct: 299 IAERVM 304 >gi|259047019|ref|ZP_05737420.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Granulicatella adiacens ATCC 49175] gi|259036338|gb|EEW37593.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Granulicatella adiacens ATCC 49175] Length = 314 Score = 170 bits (430), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 105/304 (34%), Positives = 173/304 (56%), Gaps = 11/304 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77 H+ VLL + + L+ P + +D T G G+S+ ++ D+D A+ + Sbjct: 4 HITVLLHETVDALSIKPDGIYVDCTLGGAGHSQYLLSQLTTGHLYCFDQDMQAIQHAKAR 63 Query: 78 M-RDYKE-QFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + ++ E + + A F QL+ + GV DG+++DLGVSS Q+D +RGFS+ ++ Sbjct: 64 LAKEVSEGKVTFIHANFRQLKIELGKLGVSKVDGILYDLGVSSPQLDQIERGFSYHQNAK 123 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S ++A ++VN+ + +L RI GEEK + +IA I + R +TT +L Sbjct: 124 LDMRMDQSAPLTAEEIVNEWSYDELVRIFYRYGEEKFSKQIARNIERIRAQHRIETTGEL 183 Query: 192 SSLIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+ ++ + + HPA R FQA+RI VN+E+ + L A + + GG + V+SF Sbjct: 184 VDIIRDSIPAAARRKGGHPAKRIFQAIRIAVNDELAAIEDSLEQAFEVVSVGGRISVISF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 HSLEDR+VK F +S A +++ +P+ A FQ + KK ++P+ E++ N RS+S Sbjct: 244 HSLEDRIVKTMFKQQSTVEKAPKNLPILPTEEEKAPFQLVNKKPILPSLEEITENSRSQS 303 Query: 309 AKLR 312 AKLR Sbjct: 304 AKLR 307 >gi|167754606|ref|ZP_02426733.1| hypothetical protein CLORAM_00108 [Clostridium ramosum DSM 1402] gi|237733759|ref|ZP_04564240.1| S-adenosyl-methyltransferase mraW [Mollicutes bacterium D7] gi|167705438|gb|EDS20017.1| hypothetical protein CLORAM_00108 [Clostridium ramosum DSM 1402] gi|229383097|gb|EEO33188.1| S-adenosyl-methyltransferase mraW [Coprobacillus sp. D7] Length = 314 Score = 170 bits (430), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 107/317 (33%), Positives = 172/317 (54%), Gaps = 14/317 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76 DHV VLL++ + LN + +D T G G+S + K ++ D+D A+ + Sbjct: 3 DHVTVLLKEAVEGLNIKADGIYVDCTLGGAGHSCAILKQLTTGHLYCFDQDQTAIEAARL 62 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + +++ + F +++ + + GV DG++FDLGVSS Q D G RGFS+ L Sbjct: 63 RLDAVGNNYTIIYSNFVNIKEKLNELGVTRVDGILFDLGVSSPQFDTGSRGFSYNYDARL 122 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S + A +VN + + IL +EK A +IA I ++RQ P +TT +L Sbjct: 123 DMRMDTSNPLDAYAIVNTWPYERIVEILYKYADEKFAKQIARKIEQKRQIRPIETTFELV 182 Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + F++ HPA R+FQALRI VN+E+ + L+ + L GG + V++FH Sbjct: 183 DIIKDAIPAFARRKGGHPAKRTFQALRIAVNDELNVFDRALKDSLDLLNVGGRISVITFH 242 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLED++ K F ++ V +IP P F+ I KK +V ++E++ N R+ SA Sbjct: 243 SLEDKICKYTFNDVTKLKDVPPGLPVIPDYLQPR-FKLINKKAMVASKEELEVNHRAHSA 301 Query: 310 KLRAGMRTVERSIEDDS 326 KL R +ER E+++ Sbjct: 302 KL----RIIEREFENET 314 >gi|198274315|ref|ZP_03206847.1| hypothetical protein BACPLE_00459 [Bacteroides plebeius DSM 17135] gi|198272805|gb|EDY97074.1| hypothetical protein BACPLE_00459 [Bacteroides plebeius DSM 17135] Length = 304 Score = 170 bits (430), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 105/300 (35%), Positives = 172/300 (57%), Gaps = 16/300 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H+PVLL + I ++ G +D TFG GG+SR + S + + D+D + Sbjct: 9 HIPVLLHESIEGMHLQSGGTYVDVTFGGGGHSREILRNMDDKSRLFSFDQD---ADAERN 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + D ++F+ ++ F L +++ GV D ++ DLGVSS D +RGFSF+ G L Sbjct: 66 IIND--KRFTFVRSNFRYLHNFLRYYGVEEVDAILADLGVSSHHFDDSERGFSFRFDGKL 123 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +GI+A+D++N + L + + GE K + ++A +VK R P +T + Sbjct: 124 DMRMNKRAGITAADIINTYEEEKLADLFYLYGELKNSRKLAATLVKARAQKPVETIGEFI 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++ K +Y + + A + FQALRI VN E+E L + L +A +ALK GG L+V+++HS Sbjct: 184 EIV-KPLYGREREKKEMA-KVFQALRIEVNQEMEALKEMLYAATEALKPGGRLVVITYHS 241 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK + + + A + + P F+ I KV++P+++++ N RSRSAKLR Sbjct: 242 LEDRMVKNIMKTGNIEGKAKQDFFGNVETP--FKLINNKVIIPSEDEIQRNPRSRSAKLR 299 >gi|329728859|gb|EGG65280.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus 21193] Length = 311 Score = 169 bits (429), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 103/306 (33%), Positives = 165/306 (53%), Gaps = 13/306 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+ V+L + I LN V +D T G G++ ++ ++A+D+D A+ +E Sbjct: 4 HISVMLNETIDYLNVKENGVYIDCTLGGAGHALYLLNQLNDDGRLLAIDQDQTAIDNAKE 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++D+ + + + F +L + D + VDG+ +DLGVSS Q+D +RGFS+ L Sbjct: 64 VLKDHLHKVTFVHSNFRELTQILKDLNIEKVDGIYYDLGVSSPQLDIPERGFSYHHDATL 123 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM ++A ++VN + + L +I GEEK + +IA I R+ P TT +L Sbjct: 124 DMRMDQTQELTAYEIVNNWSYEALVKIFYRYGEEKFSKQIARRIEAHREQQPITTTLELV 183 Query: 193 SLIQKTVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I++ + +K R HPA R FQALRI VN+E+ + A + +K G + V++F Sbjct: 184 DIIKEGIP-AKARRKGGHPAKRVFQALRIAVNDELSAFEDSIEQAIELVKVDGRISVITF 242 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 HSLEDRL K+ F R + IP P + + + +K + T+ED+ N R+RS Sbjct: 243 HSLEDRLCKQVFQEYEKGPEVPRGLPVIPEAYTPKL-KRVNRKPITATEEDLDDNNRARS 301 Query: 309 AKLRAG 314 AKLR Sbjct: 302 AKLRVA 307 >gi|119953105|ref|YP_945314.1| S-adenosyl-methyltransferase MraW [Borrelia turicatae 91E135] gi|263447569|sp|A1QZA2|RSMH_BORT9 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|119861876|gb|AAX17644.1| S-adenosyl-methyltransferase MraW [Borrelia turicatae 91E135] Length = 297 Score = 169 bits (429), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 106/308 (34%), Positives = 169/308 (54%), Gaps = 24/308 (7%) Query: 20 HVPVLLEKVIALL---NPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCG 74 H+PVLLE++I LL N + G V +D T G GG+S + K NVI +DRD ++ Sbjct: 6 HIPVLLEEIINLLEASNISDGFVFVDCTLGEGGHSSAVLKKYQNINVIGIDRDDVVLNRA 65 Query: 75 QETMRDYKEQFSLFQATFSQL-QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +E++ ++K + S F F +Y ++ ++ DLG+S RGFSF + L Sbjct: 66 KESLIEFKGRVSYFNTWFDDFFSEYPLSSKINFILADLGISMFHYKMSGRGFSFFEDERL 125 Query: 134 DMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 DMR+ G+SA D++N + K L ++ L E+ + RI +I++ R+ +T ++L Sbjct: 126 DMRLYPGAGGLSAYDIINTFDKKRLENLIYELSGERYSRRIVKSILEYRKIKKIETPREL 185 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++ K Y +I+PAT++FQALRI+VN+E+ L + L ++L G+L +V+FH Sbjct: 186 QDIVSKA-YPRIKLKINPATKTFQALRIYVNDELFRLKRSLPLWVESLSNNGVLAIVTFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLED++VK+FF S + +TKK ++P E+ FN SRSAKL Sbjct: 245 SLEDKIVKEFFKGLSKDQYCI---------------LTKKPIMPRCEEKRFNSASRSAKL 289 Query: 312 RAGMRTVE 319 R + E Sbjct: 290 RVIKKLYE 297 >gi|160891413|ref|ZP_02072416.1| hypothetical protein BACUNI_03863 [Bacteroides uniformis ATCC 8492] gi|156858820|gb|EDO52251.1| hypothetical protein BACUNI_03863 [Bacteroides uniformis ATCC 8492] Length = 307 Score = 169 bits (429), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 108/306 (35%), Positives = 167/306 (54%), Gaps = 16/306 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76 H+PVLL + +N P +D TFG GG+SR S + G +++ D+D A E Sbjct: 9 HIPVLLMPSVDAMNIRPDGTYVDVTFGGGGHSREILSRLEDGGRLLSFDQDEDA-----E 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 F+ ++ F L +++ G VD ++ DLGVSS D +RGFSF+ G L Sbjct: 64 RNIVNNPHFTFVRSNFRYLHNFLRYHGIEKVDAILADLGVSSHHFDDSERGFSFRFDGAL 123 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +G++A+D+VN + L I + GE K + ++A IVK R + T + Sbjct: 124 DMRMNKRAGLTAADIVNTYEEEKLADIFYLYGELKNSRKLASVIVKARATQRIATIGEFL 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +++ F + + FQALRI VN E+E L + L +A +ALK GG L+V+++HS Sbjct: 184 EIVKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLYAATEALKPGGRLVVITYHS 241 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK + + + A + + P F+ + KV+VP +E++ N RSRSAKLR Sbjct: 242 LEDRMVKNIMKTGNVEGKAEKDFFGNVLTP--FRLVNNKVIVPDEEEIERNPRSRSAKLR 299 Query: 313 AGMRTV 318 R + Sbjct: 300 IAERVM 305 >gi|169839498|ref|ZP_02872686.1| S-adenosyl-methyltransferase MraW [candidate division TM7 single-cell isolate TM7a] Length = 339 Score = 169 bits (429), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 121/306 (39%), Positives = 165/306 (53%), Gaps = 27/306 (8%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 HVPVLL + L P P + LD T G GG++ +F S+ + +DRD A++ E Sbjct: 18 HVPVLLSASLDLFKPQPKERYLDLTAGYGGHAEAFLNKTQSYSSAVLVDRDENAIA---E 74 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 R +L A F + G D ++ DLGVSS Q+D GDRGFSF GPLD Sbjct: 75 LGRFSALGATLINADFVSAAKQLVSVGEKFDVIMVDLGVSSPQLDNGDRGFSFMYDGPLD 134 Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQ--ASRIAHAIVKRRQSAPFQTTQDL 191 MRM SA+D+VN + L IL GEE+ A RIA I KRR PF T +L Sbjct: 135 MRMDQRQKFSAADIVNSYPKQKLIEILVRYGEERLSFAKRIADEIYKRR---PFTKTSEL 191 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +I + ++ +IHPATR+FQALRI VN E+ ++ L + L +GG + ++SFH Sbjct: 192 AKMIVE-IHRGGWQKIHPATRTFQALRIEVNQELAQIESLLPLLLQLLNSGGRVGIISFH 250 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDRLVK+FF SG + + + + KK + D A+N RSRSAKL Sbjct: 251 SLEDRLVKRFFKDNSGL-----------SFESELELLNKKPLDGATYD-AYNPRSRSAKL 298 Query: 312 RAGMRT 317 R ++ Sbjct: 299 RGALKN 304 >gi|260437306|ref|ZP_05791122.1| S-adenosyl-methyltransferase MraW [Butyrivibrio crossotus DSM 2876] gi|292810218|gb|EFF69423.1| S-adenosyl-methyltransferase MraW [Butyrivibrio crossotus DSM 2876] Length = 313 Score = 169 bits (429), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 105/311 (33%), Positives = 168/311 (54%), Gaps = 14/311 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H VLL + I LN P + +D T G G+S C+ S +I +D+D A+ Sbjct: 5 HKSVLLNECIENLNIKPDGIYVDGTLGGAGHSYHICERLSKKGRLIGIDQDEDAIRAATT 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSF-QKSGP 132 + +K++ ++ + +S +++ + G VDG++ D+GVSS Q+D +RGF++ ++ P Sbjct: 65 RLEPFKDRVTIVKDNYSNIKNVLVSLGIDKVDGILLDIGVSSYQLDNAERGFTYKEEDAP 124 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM SGI+A DVVN + +L R++ GEE+ A IA I R + TT L Sbjct: 125 LDMRMDRQSGITAQDVVNDYSEMELFRVIRDYGEEQFAKNIAKHICIERNKSRITTTGRL 184 Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 + +I+ + + N HPA ++FQA+RI VN E+ L + + + L G L +++F Sbjct: 185 TEIIKAAIPMKFRVNGGHPAKKTFQAIRIEVNRELYVLEESIDTMIDLLNDKGRLCIITF 244 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM---IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 HSLEDR+VK F + N V IT+K +VPT E++ N+R++ Sbjct: 245 HSLEDRIVKNKFRDNVNTCTCPPDFPVCVCGNRPKGVI--ITRKPIVPTDEEIEINKRAK 302 Query: 308 SAKLRAGMRTV 318 S+KLR R + Sbjct: 303 SSKLRVFERVI 313 >gi|33239648|ref|NP_874590.1| S-adenosylmethionine-dependent methyltransferase [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|42559452|sp|Q7VE18|RSMH_PROMA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|33237173|gb|AAP99242.1| Predicted S-adenosylmethionine-dependent methyltransferase [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 305 Score = 169 bits (429), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 116/305 (38%), Positives = 166/305 (54%), Gaps = 34/305 (11%) Query: 20 HVPVLLEKVIALLNPAPGKVIL-----DATFGAGGYSRSFCK--MGSNVIALDRDPFAVS 72 H PVL+ +V+ + P ++++ DAT G GG+S K ++ LD+DP A+ Sbjct: 14 HTPVLVNQVLEAIAKLPSELLIKGKLIDATIGGGGHSALILKGFPSLHITGLDQDPSAID 73 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + + + + + F+ D+VP + V V+ DLGVSS QID RGFSF+ +GP Sbjct: 74 AASKQLLHFGSRAEIISSNFA---DFVPQEEVAFVLADLGVSSPQIDEAKRGFSFRLNGP 130 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA--PFQTTQ 189 LDMRM+ G+ A +++ + K L ++ GEEK + RIA I K+ SA P++ T Sbjct: 131 LDMRMNPKKGLKADELLEKTEEKALADLIYKYGEEKFSRRIARRI-KQDLSANGPYEGTS 189 Query: 190 DLSSLIQKTVYFSK--NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 L+ I Y K N RIHPATR+FQALRI +NNE++ L L+ A L GG+ V Sbjct: 190 ALAYAIA-GCYPPKMRNGRIHPATRTFQALRIAINNELDALQHLLQKAPNWLLPGGVFAV 248 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +SFHSLEDRLVKK F + + IT+K + + N RSR Sbjct: 249 ISFHSLEDRLVKKSFLTDE-----------------RLERITRKPIQADSNEKLNNPRSR 291 Query: 308 SAKLR 312 SAKLR Sbjct: 292 SAKLR 296 >gi|47230508|emb|CAF99701.1| unnamed protein product [Tetraodon nigroviridis] Length = 437 Score = 169 bits (429), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 131/385 (34%), Positives = 188/385 (48%), Gaps = 93/385 (24%) Query: 20 HVPVLLEKVIALLNPAPGK----------VILDATFGAGGYSRSFCKMGSNV--IALDRD 67 H PV+L++V+ L+ PG+ V+LD TFG GG++++ M V +ALDRD Sbjct: 57 HTPVMLKEVLHYLDIQPGQGEGSRLSIFHVVLDMTFGGGGHTKAILSMVPEVKVLALDRD 116 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD-----KGVDGVVFDLGVSSMQIDCGD 122 P A+S ++ ++ Q + FSQL + D VD V+ D G SSMQ+D + Sbjct: 117 PTAISLAEKLAKESSGQVTPLLGRFSQLDVLLSDLKVKPGSVDAVLLDAGCSSMQMDQAE 176 Query: 123 RGFSFQKSGPLDMRM----------------------SCSGI----------SASDVVNQ 150 RGFS K GPLDMRM S G+ SA+DVVN Sbjct: 177 RGFSLSKDGPLDMRMDGESRISELSAFATVSKDMTSSSLIGLCFVRRYPEMPSAADVVNT 236 Query: 151 -ANVKDLTRILGILGEE-KQASRIAHA----------------------IVKRRQSAPFQ 186 + G+ G E + +R +H VKR + P Q Sbjct: 237 PGSTGSCIHHHGLRGGEMGRENRFSHCGGTSHQPHHPDAAAGQRGGSGQTVKRLR--PQQ 294 Query: 187 TTQDLSSLIQKTVYFSKNNRI----HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 + + SL V +++ +R+ H AT++FQAL IFVN+E++EL GLR+A +AL+ G Sbjct: 295 SARRFRSL-PAAVAYARKDRLRRPAHAATKTFQALCIFVNDELKELHAGLRAAREALRPG 353 Query: 243 GLLIVVSFHSLEDRLVKKFFAS-----------RSGKVMAVRHMIPSNAHPAVFQSITKK 291 G L V++FHSLEDRLVK+F R GK + + A A + + +K Sbjct: 354 GRLCVITFHSLEDRLVKRFLRGHDLAHSDQQLFRPGKRDLPKET--NTAESAHWLLLRRK 411 Query: 292 VVVPTQEDVAFNRRSRSAKLRAGMR 316 V+ P ++DV N R RSAKLRA +R Sbjct: 412 VIAPERDDVRDNPRGRSAKLRAALR 436 >gi|325856519|ref|ZP_08172208.1| S-adenosyl-methyltransferase MraW [Prevotella denticola CRIS 18C-A] gi|325483488|gb|EGC86461.1| S-adenosyl-methyltransferase MraW [Prevotella denticola CRIS 18C-A] Length = 314 Score = 169 bits (429), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 113/304 (37%), Positives = 174/304 (57%), Gaps = 17/304 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAV-SCGQ 75 HVPVLL + I LN G + +D TFG GG+SR S + GS++ + D+D A + G+ Sbjct: 9 HVPVLLNESIEGLNLHAGGIYVDVTFGGGGHSREILSRLEAGSHLYSFDQDADAEQNIGR 68 Query: 76 ETMRDYK-EQFSLFQATFSQLQDY-----VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 + + ++F+ ++ F L+++ VP +DG++ DLGVSS D RGFSF+ Sbjct: 69 MGLSSEQVDRFTFIRSNFRYLKNWMRYYSVPH--IDGLLADLGVSSHHFDDETRGFSFRF 126 Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM+ +G++A+D++N+ + + L IL + GE KQ+ RIA AIVK R+ ++TT Sbjct: 127 EAPLDMRMNKRAGMTAADILNEYDEEHLADILYLYGELKQSRRIAAAIVKGREQKAYKTT 186 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 DL ++ +F + + FQALRI VN E++ L + L +A L GG L V+ Sbjct: 187 NDLLAITDP--FFRRAREKKDMAKLFQALRIEVNYEMDALREMLLAAIGLLSPGGRLSVI 244 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 ++HSLEDR+VK S + + + P F+ + KV+ ++ N RSRS Sbjct: 245 TYHSLEDRMVKNVMKSGNIEGKVSQDFFGRIDTP--FRLVNSKVITANNDEQERNPRSRS 302 Query: 309 AKLR 312 AKLR Sbjct: 303 AKLR 306 >gi|297620593|ref|YP_003708730.1| S-adenosyl-methyltransferase [Waddlia chondrophila WSU 86-1044] gi|297375894|gb|ADI37724.1| S-adenosyl-methyltransferase [Waddlia chondrophila WSU 86-1044] Length = 306 Score = 169 bits (429), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 110/302 (36%), Positives = 167/302 (55%), Gaps = 13/302 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCGQE 76 H+ VLLE+V + K +D T GAGG+S + + +D+DP A+ +E Sbjct: 4 HLSVLLEEVAESFSDVDLKRFVDGTLGAGGHSAEILSAHPEIQRFLGIDQDPDALEIARE 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + E+ + FS L++++ G VDG++ DLGVSSMQ D +RGFS Q+ GPL Sbjct: 64 RLSKWSEKVMFQRGNFSDLKEHLAQNGLEKVDGILLDLGVSSMQFDRPERGFSLQQDGPL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ ++A+++VN +L + GEEK+ A A+ + P T +L Sbjct: 124 DMRMNPEEPLTAAEIVNTWPEAELGDLFKKYGEEKRWRAAARAVA---AARPISRTLELV 180 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++ + + +IHPAT FQALR+ VN EIE + + + A L GG L V+SFHS Sbjct: 181 EVLTSVLGRPRKGKIHPATLIFQALRLAVNREIERIEEVIPQAIGCLNPGGRLAVISFHS 240 Query: 253 LEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 LEDR+VK+ F + + R + + + P V IT+K +VP + +V N RSRS+K Sbjct: 241 LEDRIVKRQFRYLADDKESTRGVGGVFISKEPVV-NLITRKPIVPGKAEVERNPRSRSSK 299 Query: 311 LR 312 LR Sbjct: 300 LR 301 >gi|300173578|ref|YP_003772744.1| S-adenosyl-methyltransferase MraW [Leuconostoc gasicomitatum LMG 18811] gi|299887957|emb|CBL91925.1| S-adenosyl-methyltransferase MraW [Leuconostoc gasicomitatum LMG 18811] Length = 313 Score = 169 bits (429), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 109/308 (35%), Positives = 167/308 (54%), Gaps = 16/308 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCGQE 76 +HV VLL++ +ALLN P +DAT G GG++ K N I + D+D A+ +E Sbjct: 5 EHVTVLLKEAVALLNVKPDGNYVDATLGGGGHTGEILKQLDNGILYSFDQDDTAIKYNEE 64 Query: 77 TMRDYKEQFS-----LFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQ 128 Y + + L F L + + + GV DGV++DLGVSS+Q D G RGFS+ Sbjct: 65 ---QYAAEIASGKLVLIHQNFRTLTEALAELGVTQVDGVLYDLGVSSVQFDDGQRGFSYN 121 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 LDMRM ++A ++N+ + D+ RIL GE++ +IA I R++ T Sbjct: 122 YDADLDMRMDQRQTLTAKTIINEWSFNDILRILSRYGEDRFPKQIARKIEHHRENGVINT 181 Query: 188 TQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T +L +I++ + ++ HPA R+FQALRI VN+E+ L L + L GG + Sbjct: 182 TFELVDIIKEAIPAPARRKGGHPAKRTFQALRIAVNDELGALEDSLTQSLDLLAPGGRIS 241 Query: 247 VVSFHSLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 ++F SLEDRLVK+ F + S + V + A + +T+K ++PT ++ N R Sbjct: 242 AITFQSLEDRLVKQMFREKTSTPELPVGLPVLPGQFEADYTLLTRKPILPTNDETQTNHR 301 Query: 306 SRSAKLRA 313 S+SAKLR Sbjct: 302 SQSAKLRG 309 >gi|294674965|ref|YP_003575581.1| S-adenosyl-methyltransferase MraW [Prevotella ruminicola 23] gi|294473982|gb|ADE83371.1| S-adenosyl-methyltransferase MraW [Prevotella ruminicola 23] Length = 304 Score = 169 bits (429), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 111/300 (37%), Positives = 165/300 (55%), Gaps = 16/300 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HVPVLL + I L G + +D TFG GG+S+ + +++ + D+DP + Sbjct: 9 HVPVLLHESIDGLAIKSGGIYVDVTFGGGGHSKEILRRLDEKAHLYSFDQDP---DAEKN 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + D ++F+ ++ F L++++ GVD G++ DLGVSS D RGFSF+ PL Sbjct: 66 IVND--DRFTFVRSNFRYLKNWMRYYGVDHIDGLLADLGVSSHHFDDETRGFSFRFDAPL 123 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +G +A++++N + + L I I GE K A +IA I K R +TT DL Sbjct: 124 DMRMNKRAGTTAAEILNTYDEEQLADIFYIYGELKNARKIASIIAKTRNEKKIETTGDLM 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 S +K F + + FQALRI VN+E++ L + L A+ L GG L V+++HS Sbjct: 184 SATEKL--FQREREKKEMAKMFQALRIEVNHEMDALKEMLNGAKDLLGEGGRLSVITYHS 241 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK ++G V A F+ I KV+VP+ E+ N RSRSAKLR Sbjct: 242 LEDRIVKNMM--KAGNVEGKIKQDFFGRIEAPFRLINNKVIVPSDEEQQQNPRSRSAKLR 299 >gi|322386906|ref|ZP_08060530.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus cristatus ATCC 51100] gi|321269188|gb|EFX52124.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus cristatus ATCC 51100] Length = 316 Score = 169 bits (429), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 109/312 (34%), Positives = 177/312 (56%), Gaps = 14/312 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGS--NVIALDRDPFAVSCGQE 76 H+ VLL + I L+ + +DAT G G+S K+G ++ A D+D A+ ++ Sbjct: 7 HITVLLHETIDQLDVRSDGIYVDATLGGAGHSEYLLSKLGDKGHLYAFDQDQTAIDNAKK 66 Query: 77 TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y E+ + + F L+ + + GV DG+ +DLGVSS Q+D +RGFS+++ Sbjct: 67 RLAPYIERGMVTFIKDNFRNLKTRLNEVGVEKIDGICYDLGVSSPQLDERERGFSYKQDA 126 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ + ++A VVNQ DL RI GE+K + +IA I + R+ P +TT + Sbjct: 127 PLDMRMNQEAALTAYQVVNQYPYNDLVRIFFKYGEDKFSKQIARKIEQAREIKPIETTTE 186 Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ +I K+ +K + HPA + FQA+RI VN+E+ + ++ A L GG + V+ Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDLLAVGGRISVI 245 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F S V IP + P + + +++K ++P++E++ N R+ Sbjct: 246 TFHSLEDRLTKQLFKEASTVDVPKGLPFIPDDLQPKL-ELVSRKPILPSKEELEANNRAH 304 Query: 308 SAKLRAGMRTVE 319 SAKLR + E Sbjct: 305 SAKLRVARKVHE 316 >gi|229546836|ref|ZP_04435561.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX1322] gi|307290049|ref|ZP_07569973.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0411] gi|312901052|ref|ZP_07760343.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0470] gi|229308001|gb|EEN73988.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX1322] gi|306498891|gb|EFM68385.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0411] gi|311291878|gb|EFQ70434.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0470] gi|315029678|gb|EFT41610.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX4000] Length = 322 Score = 169 bits (429), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 107/308 (34%), Positives = 170/308 (55%), Gaps = 19/308 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VLL++ + L P V +D T G G+S ++ A D+D A++ + Sbjct: 11 HYTVLLKETVDGLQVKPDGVYVDCTLGGAGHSEYLLTQLNEHGHLYAFDQDQKALAHAKT 70 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++ Y K Q + ++ F +++ + + GV DG+++DLGVSS Q+D +RGFS+ + Sbjct: 71 RLQKYVDKGQVTFIKSNFRNIKEELAEHGVFHVDGILYDLGVSSPQLDEAERGFSYHQDA 130 Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM ++A +VVN + +L +I GEEK + +IA I + R+ P +TT + Sbjct: 131 PLDMRMDQDAPLTAREVVNTYSYSELVKIFFRYGEEKFSKQIAREIERVREKQPIETTGE 190 Query: 191 LSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I+ + ++ HPA R FQA+RI VN+E+ + + L A L G + V++ Sbjct: 191 LVEIIKTAIPAPARRKGGHPAKRIFQAIRIAVNDELGAVEESLEQAIDLLAKNGRISVIT 250 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPS-NAHPAVFQS----ITKKVVVPTQEDVAFNR 304 FHSLEDR+VK F S V+ + P P FQ IT+K ++P+ +++ N Sbjct: 251 FHSLEDRIVKTMFKEYS----TVQDLPPGIPVVPEEFQPELKVITRKPILPSDSELSENN 306 Query: 305 RSRSAKLR 312 RSRSAKLR Sbjct: 307 RSRSAKLR 314 >gi|29375571|ref|NP_814725.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis V583] gi|29343032|gb|AAO80795.1| conserved hypothetical protein TIGR00006 [Enterococcus faecalis V583] Length = 319 Score = 169 bits (429), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 108/316 (34%), Positives = 172/316 (54%), Gaps = 19/316 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VLL++ + L P V +D T G G+S ++ A D+D A++ + Sbjct: 8 HYTVLLKETVDGLQVKPDGVYVDCTLGGAGHSEYLLTQLNEHGHLYAFDQDQKALAHAKT 67 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++ Y K Q + ++ F +++ + + GV DG+++DLGVSS Q+D +RGFS+ + Sbjct: 68 RLQKYVDKGQVTFIKSNFRNIKEELAEHGVFHVDGILYDLGVSSPQLDEAERGFSYHQDA 127 Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM ++A +VVN + +L +I GEEK + +IA I + R+ P +TT + Sbjct: 128 PLDMRMDQDAPLTAREVVNTYSYSELVKIFFRYGEEKFSKQIAREIERVREKQPIETTGE 187 Query: 191 LSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I+ + ++ HPA R FQA+RI VN+E+ + + L A L G + V++ Sbjct: 188 LVEIIKTAIPAPARRKGGHPAKRIFQAIRIAVNDELGAVEESLEQAIDLLAKNGRISVIT 247 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPS-NAHPAVFQS----ITKKVVVPTQEDVAFNR 304 FHSLEDR+VK F S V+ + P P FQ IT+K ++P+ +++ N Sbjct: 248 FHSLEDRIVKTMFKEYS----TVQDLPPGIPVVPEEFQPELKVITRKPILPSDSELSENN 303 Query: 305 RSRSAKLRAGMRTVER 320 RSRSAKLR + R Sbjct: 304 RSRSAKLRIAEKIKSR 319 >gi|325123733|gb|ADY83256.1| S-adenosylmethionine methyltransferase [Acinetobacter calcoaceticus PHEA-2] Length = 285 Score = 169 bits (429), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 110/287 (38%), Positives = 165/287 (57%), Gaps = 17/287 (5%) Query: 39 VILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95 + +DATFG GG++R K+ N V A D+DP A+ ++ +F++ A+F+ + Sbjct: 1 MYIDATFGRGGHTRLLLSKLDENARVYAFDKDPQALEVASALAQE-DPRFTIIHASFADI 59 Query: 96 QDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQA 151 ++ + + GV DG++ DLGVSS Q+D +RGFSF + GPLDMRM S G++A++ + + Sbjct: 60 KEKMQEIGVMSVDGIMADLGVSSPQLDQAERGFSFMQDGPLDMRMDNSKGLTAAEWLLEI 119 Query: 152 NVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPAT 211 + L I+ GEE+ + RIA AI +Q+ TT L+ L+ KT + HPAT Sbjct: 120 EEEQLANIIYQYGEERYSRRIAKAI---KQAGKLDTTAQLAELV-KTAHPKWEKHKHPAT 175 Query: 212 RSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMA 271 R+FQA+RI +N E++++ L A LK G L V+SFHSLEDRL+K+F S Sbjct: 176 RTFQAIRIAINKELDDIEVFLPQAVDLLKPKGRLSVISFHSLEDRLIKQFIQKESTLAED 235 Query: 272 VRHMIPSNAHPAVFQSITKKV--VVPTQEDVAFNRRSRSAKLRAGMR 316 + +P V KK+ V ++E+V N RSRSA LR R Sbjct: 236 IGWGMPQQ---QVDTRRLKKISRVRASEEEVKANPRSRSAWLRVAER 279 >gi|296081823|emb|CBI20828.3| unnamed protein product [Vitis vinifera] Length = 324 Score = 169 bits (428), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 110/321 (34%), Positives = 168/321 (52%), Gaps = 38/321 (11%) Query: 20 HVPVLLEKVIALLNPA-------PGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPF 69 HVPV+L +V+ + + P + +D T GA G+S + + + + +D DP Sbjct: 9 HVPVMLGEVLEVFSSFSSSSSSSPLRSFVDCTLGAAGHSSAIIQAHPELELYVGMDVDPI 68 Query: 70 AVSCGQETMRD------------YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQ 117 A Q +R + F ++ ++ + + GVDG++ DLG+SSMQ Sbjct: 69 AHEKAQARIRSLCGDSSHLKAHTFMRNFKNIKSVLREVDEELLSSGVDGILMDLGMSSMQ 128 Query: 118 IDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 ++ +RGFS +GPLDMRM + ++A D++N ++ RIL GEE + + I Sbjct: 129 VNNAERGFSVLANGPLDMRMDPQASLTAEDILNSWPDTEVGRILREYGEESNWRSLQNKI 188 Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFSKNNR---IHPATRSFQALRIFVNNEIEELAQGLR 233 VK R +T +L LI+KT ++ R I ATR FQALRI VN+E++ L L Sbjct: 189 VKARLFGGLHSTGELVDLIRKTTPRTRGGRQGWIKTATRVFQALRIAVNDELKTLEDSLY 248 Query: 234 SAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS--ITKK 291 + + L GG L V+SFHSLEDR+VK+ F +I SN + +TK+ Sbjct: 249 ACFECLTPGGRLAVISFHSLEDRIVKQTFLD----------IINSNGEDERWNGTILTKR 298 Query: 292 VVVPTQEDVAFNRRSRSAKLR 312 + P++E+ NRRSRSAKLR Sbjct: 299 PITPSEEEERLNRRSRSAKLR 319 >gi|256852642|ref|ZP_05558013.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis T8] gi|256711987|gb|EEU27024.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis T8] Length = 319 Score = 169 bits (428), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 107/308 (34%), Positives = 170/308 (55%), Gaps = 19/308 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VLL++ + L P V +D T G G+S ++ A D+D A++ + Sbjct: 8 HYTVLLKETVDGLQVKPDGVYVDCTLGGAGHSEYLLTQLNEHGHLYAFDQDQKALAHAKT 67 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++ Y K Q + ++ F +++ + + GV DG+++DLGVSS Q+D +RGFS+ + Sbjct: 68 RLQKYVDKGQVTFIKSNFRNIKEELAEHGVFHVDGILYDLGVSSPQLDEAERGFSYHQDA 127 Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM ++A +VVN + +L +I GEEK + +IA I + R+ P +TT + Sbjct: 128 PLDMRMDQDAPLTAREVVNTYSYSELVKIFFRYGEEKFSKQIAREIERVREKQPIETTGE 187 Query: 191 LSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I+ + ++ HPA R FQA+RI VN+E+ + + L A L G + V++ Sbjct: 188 LVEIIKTAIPAPARRKGGHPAKRIFQAIRIAVNDELGAVEESLEQAIDLLAKNGRISVIT 247 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPS-NAHPAVFQS----ITKKVVVPTQEDVAFNR 304 FHSLEDR+VK F S V+ + P P FQ IT+K ++P+ +++ N Sbjct: 248 FHSLEDRIVKTMFKEYS----TVQDLPPGIPVVPEEFQPELKVITRKPILPSDSELSENN 303 Query: 305 RSRSAKLR 312 RSRSAKLR Sbjct: 304 RSRSAKLR 311 >gi|238019059|ref|ZP_04599485.1| hypothetical protein VEIDISOL_00921 [Veillonella dispar ATCC 17748] gi|237864314|gb|EEP65604.1| hypothetical protein VEIDISOL_00921 [Veillonella dispar ATCC 17748] Length = 310 Score = 169 bits (428), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 107/308 (34%), Positives = 167/308 (54%), Gaps = 12/308 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 +H VLL + + + P + +D T G G++ + +M +I LD+D A+S + Sbjct: 4 NHTSVLLRETVDSVVTNPKGIYVDCTLGGAGHAHAVGEMLDPEGMIIGLDQDEDALSVAR 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + D Q FS L++ + ++G VDG +FDLGVSS Q+D +RGFS+ GP Sbjct: 64 QRLSDLTCQVLTIPTNFSNLKEALHNEGIYEVDGFIFDLGVSSYQLDTPERGFSYMNDGP 123 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM ++A +VVN+ + L +I+ GEE+ A RI I+ RQ TT +L Sbjct: 124 LDMRMDKDAPLTAEEVVNEYDADALLQIIRDYGEERWAKRIVEFIINARQEKRITTTGEL 183 Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I++ + ++ + HPA R+FQA+RI VN E+ L A LK G + V++F Sbjct: 184 VRIIKQAIPAKARQDGPHPAKRTFQAIRIEVNRELAILHDSFVDAVSMLKPKGKIGVITF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 HSLEDR+ K+ F S + M N H AV ++ K + P+ ++ N R+RS Sbjct: 244 HSLEDRITKQTFKELSTACICPPELPMCVCN-HKAVVKA-KNKAIEPSAGEIEVNPRARS 301 Query: 309 AKLRAGMR 316 AKLR ++ Sbjct: 302 AKLRVAVK 309 >gi|24378941|ref|NP_720896.1| S-adenosyl-methyltransferase MraW [Streptococcus mutans UA159] gi|30173045|sp|Q8DVM7|RSMH_STRMU RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|24376827|gb|AAN58202.1|AE014891_6 conserved hypoyhetical protein [Streptococcus mutans UA159] Length = 316 Score = 169 bits (428), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 107/305 (35%), Positives = 170/305 (55%), Gaps = 14/305 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGS--NVIALDRDPFAVSCGQE 76 H+ VLL + I +L+ P + +DAT G G+S K+G ++ D+D A+ + Sbjct: 7 HITVLLHETIDMLDIKPDGIYVDATLGGAGHSECLLSKLGKEGHLYCFDQDQKAIDNAKI 66 Query: 77 TMRDYKE--QFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++ Y + Q S + F L+ + D+G+ DG+ +DLGVSS Q+D +RGFS++K Sbjct: 67 RLQQYVKTGQVSFIKDNFRHLKSRLADEGIYEIDGICYDLGVSSPQLDERERGFSYKKDA 126 Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ ++A DVVN + +DL R+ GE+K + +IA I R+ +TT + Sbjct: 127 PLDMRMNQDAQLTAFDVVNTYDYRDLVRLFFKYGEDKFSKQIARKIESARKEKLIETTAE 186 Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ +I K+ +K + HPA + FQA+RI VN+E+ + L A L G + V+ Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAAEESLTQALDLLALNGRIAVI 245 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F + V +P N P F + +K ++P +++ N R+ Sbjct: 246 TFHSLEDRLTKQLFKEVTTLDVPKGLPFVPENLQPK-FSLVNRKPILPNARELSENNRAH 304 Query: 308 SAKLR 312 SAKLR Sbjct: 305 SAKLR 309 >gi|149178739|ref|ZP_01857322.1| S-adenosyl-methyltransferase MraW [Planctomyces maris DSM 8797] gi|148842437|gb|EDL56817.1| S-adenosyl-methyltransferase MraW [Planctomyces maris DSM 8797] Length = 305 Score = 169 bits (428), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 112/313 (35%), Positives = 173/313 (55%), Gaps = 35/313 (11%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+PVLL +VI L+ +PG +++D T GAGG+S K +N +I LDRD A+ G Sbjct: 13 HLPVLLREVITQLDLSPGLIVVDGTVGAGGHSEHILKKINNEGTLIGLDRD--AMMLGFA 70 Query: 77 TMRDYKEQFS-----LFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 T + E L Q+++++L + + VD V+ DLG+SS Q+ +RGF F+ Sbjct: 71 TQKLKPESLPAGRCYLRQSSYAELPAVMEELQISSVDRVLLDLGLSSDQLSDDERGFGFE 130 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 +G LD+R G+ A ++ +L IL + GEE+ + RIA+ IVK+R++AP +T Sbjct: 131 SAGELDLRFDTRQGVPAWQLLESLPESELCEILEVYGEERFSQRIANQIVKQRKTAPVRT 190 Query: 188 TQDLSSLIQKTVYFS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRSA-EKALKAGGL 244 DL +Q+ + R +PATR FQALRI N E+E+L L + + L+ GG Sbjct: 191 AADLIKAVQQAIPGKALAAARKNPATRVFQALRIAANQELEQLETMLETVLPQVLQPGGR 250 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 +++SFHSLEDR M+ R + P + +++T K +V TQ + N Sbjct: 251 AVIISFHSLEDR-------------MSSRRLKPGD-----LKNLTAKPIVATQAEQRVNP 292 Query: 305 RSRSAKLRAGMRT 317 R R+AKLR ++T Sbjct: 293 RCRTAKLRVAVKT 305 >gi|212692815|ref|ZP_03300943.1| hypothetical protein BACDOR_02314 [Bacteroides dorei DSM 17855] gi|212664604|gb|EEB25176.1| hypothetical protein BACDOR_02314 [Bacteroides dorei DSM 17855] Length = 304 Score = 169 bits (428), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 110/300 (36%), Positives = 167/300 (55%), Gaps = 16/300 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76 H+PVLL + + +N PG + +DATFG GG+S+ S +++ + D+D + Sbjct: 9 HIPVLLNESVDGMNIQPGGIYVDATFGGGGHSKEILSRLDSTAHLYSFDQDE---DAEKN 65 Query: 77 TMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + D +F+ ++ F L + Y + VD ++ DLGVSS D +RGFSF+ G L Sbjct: 66 IVSD--SRFTFVRSNFRYLSNFLRYYDVEEVDAILADLGVSSHHFDDSERGFSFRFEGKL 123 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +G++A+DVVN + + L I + GE K + ++A IVK R T D Sbjct: 124 DMRMNKRAGMTAADVVNTYDEERLANIFYLYGELKNSHKLASTIVKARGVKQIITIGDFL 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ F + + FQALRI VN E+E L + L +A KALK GG L+V+++HS Sbjct: 184 EVIKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLYAAAKALKPGGRLVVITYHS 241 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK + + + A + + P F+ + KV+V E+V N RSRSAKLR Sbjct: 242 LEDRMVKNIMKTGNIEGKAEQDFFGNVQTP--FKLVNSKVIVAGNEEVTCNPRSRSAKLR 299 >gi|83319603|ref|YP_424368.1| S-adenosyl-methyltransferase MraW [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|123535772|sp|Q2SS95|RSMH_MYCCT RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|83283489|gb|ABC01421.1| S-adenosyl-methyltransferase MraW [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 309 Score = 169 bits (428), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 111/307 (36%), Positives = 165/307 (53%), Gaps = 22/307 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+PVLL++ I LN + +D T G G++ K S + A+D+D A+ +E Sbjct: 4 HIPVLLDESIKYLNIKLNGIYVDCTLGRAGHASEILKRLSQNGFLYAIDQDKTAIGQAKE 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + F L Q FS L + VDG+++DLGVSS Q+D G RGFS++ GPL Sbjct: 64 KLEKISNNFFLIQGNFSNLSALLAINHIFSVDGILYDLGVSSPQLDIGSRGFSYRIDGPL 123 Query: 134 DMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 DMRM + ++A ++NQ + + IL GEE A IA IV R P +T L Sbjct: 124 DMRMDITNNNLTADTIINQYSETQIEDILFKYGEESFAKSIAKKIVLSR---PINSTLQL 180 Query: 192 -----SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 S+L QK + K HPA ++FQALRIF+NNE+ L L+ A L + G + Sbjct: 181 VEVIKSALPQKVLKQKK----HPAKKTFQALRIFINNELIVLENSLKQALDLLNSKGRIC 236 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMA-VRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNR 304 V++FHSLE+++VK F S + + + +P A+ + F+ + KK + P+ ++ N Sbjct: 237 VITFHSLEEKIVKNIFNSSTNYFQEQLFNNLPIKANLNSQFKLVIKKPIKPSLLELENNH 296 Query: 305 RSRSAKL 311 RS SAKL Sbjct: 297 RSHSAKL 303 >gi|227555099|ref|ZP_03985146.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis HH22] gi|229548930|ref|ZP_04437655.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis ATCC 29200] gi|293382538|ref|ZP_06628472.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis R712] gi|293387861|ref|ZP_06632400.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis S613] gi|307268069|ref|ZP_07549457.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX4248] gi|307272003|ref|ZP_07553269.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0855] gi|307275472|ref|ZP_07556614.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX2134] gi|307278960|ref|ZP_07560019.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0860] gi|307289409|ref|ZP_07569363.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0109] gi|312904551|ref|ZP_07763709.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0635] gi|312906859|ref|ZP_07765856.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis DAPTO 512] gi|312952739|ref|ZP_07771601.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0102] gi|312978886|ref|ZP_07790612.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis DAPTO 516] gi|227175767|gb|EEI56739.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis HH22] gi|229305951|gb|EEN71947.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis ATCC 29200] gi|291080086|gb|EFE17450.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis R712] gi|291082708|gb|EFE19671.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis S613] gi|306499664|gb|EFM69027.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0109] gi|306504347|gb|EFM73558.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0860] gi|306507860|gb|EFM76988.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX2134] gi|306511298|gb|EFM80302.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0855] gi|306515710|gb|EFM84237.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX4248] gi|310627113|gb|EFQ10396.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis DAPTO 512] gi|310629255|gb|EFQ12538.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0102] gi|310632064|gb|EFQ15347.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0635] gi|311288323|gb|EFQ66879.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis DAPTO 516] gi|315031725|gb|EFT43657.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0017] gi|315034218|gb|EFT46150.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0027] gi|315144374|gb|EFT88390.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX2141] gi|315149512|gb|EFT93528.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0012] gi|315153065|gb|EFT97081.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0031] gi|315156838|gb|EFU00855.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0043] gi|315157624|gb|EFU01641.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0312] gi|315162946|gb|EFU06963.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0645] gi|315165146|gb|EFU09163.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX1302] gi|315168045|gb|EFU12062.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX1341] gi|315171926|gb|EFU15943.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX1342] gi|315173297|gb|EFU17314.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX1346] gi|315574267|gb|EFU86458.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0309B] gi|315577395|gb|EFU89586.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0630] gi|315581578|gb|EFU93769.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0309A] gi|327534575|gb|AEA93409.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis OG1RF] gi|329574359|gb|EGG55931.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX1467] Length = 322 Score = 169 bits (428), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 108/316 (34%), Positives = 172/316 (54%), Gaps = 19/316 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VLL++ + L P V +D T G G+S ++ A D+D A++ + Sbjct: 11 HYTVLLKETVDGLQVKPDGVYVDCTLGGAGHSEYLLTQLNEHGHLYAFDQDQKALAHAKT 70 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++ Y K Q + ++ F +++ + + GV DG+++DLGVSS Q+D +RGFS+ + Sbjct: 71 RLQKYVDKGQVTFIKSNFRNIKEELAEHGVFHVDGILYDLGVSSPQLDEAERGFSYHQDA 130 Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM ++A +VVN + +L +I GEEK + +IA I + R+ P +TT + Sbjct: 131 PLDMRMDQDAPLTAREVVNTYSYSELVKIFFRYGEEKFSKQIAREIERVREKQPIETTGE 190 Query: 191 LSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I+ + ++ HPA R FQA+RI VN+E+ + + L A L G + V++ Sbjct: 191 LVEIIKTAIPAPARRKGGHPAKRIFQAIRIAVNDELGAVEESLEQAIDLLAKNGRISVIT 250 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPS-NAHPAVFQS----ITKKVVVPTQEDVAFNR 304 FHSLEDR+VK F S V+ + P P FQ IT+K ++P+ +++ N Sbjct: 251 FHSLEDRIVKTMFKEYS----TVQDLPPGIPVVPEEFQPELKVITRKPILPSDSELSENN 306 Query: 305 RSRSAKLRAGMRTVER 320 RSRSAKLR + R Sbjct: 307 RSRSAKLRIAEKIKSR 322 >gi|255971443|ref|ZP_05422029.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Enterococcus faecalis T1] gi|255974058|ref|ZP_05424644.1| mraW [Enterococcus faecalis T2] gi|256617913|ref|ZP_05474759.1| mraW [Enterococcus faecalis ATCC 4200] gi|256761747|ref|ZP_05502327.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Enterococcus faecalis T3] gi|256957082|ref|ZP_05561253.1| mraW [Enterococcus faecalis DS5] gi|256960173|ref|ZP_05564344.1| mraW [Enterococcus faecalis Merz96] gi|256962585|ref|ZP_05566756.1| mraW [Enterococcus faecalis HIP11704] gi|257077878|ref|ZP_05572239.1| mraW [Enterococcus faecalis JH1] gi|257081242|ref|ZP_05575603.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis E1Sol] gi|257083900|ref|ZP_05578261.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis Fly1] gi|257086348|ref|ZP_05580709.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Enterococcus faecalis D6] gi|257089398|ref|ZP_05583759.1| S-adenosyl-methyltransferase mraW [Enterococcus faecalis CH188] gi|257415608|ref|ZP_05592602.1| mraW [Enterococcus faecalis AR01/DG] gi|257418579|ref|ZP_05595573.1| S-adenosyl-methyltransferase mraW [Enterococcus faecalis T11] gi|257421238|ref|ZP_05598228.1| S-adenosyl-methyltransferase mraW [Enterococcus faecalis X98] gi|294780578|ref|ZP_06745941.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis PC1.1] gi|300859663|ref|ZP_07105751.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TUSoD Ef11] gi|30179792|sp|O07104|RSMH_ENTFA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|255962461|gb|EET94937.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Enterococcus faecalis T1] gi|255966930|gb|EET97552.1| mraW [Enterococcus faecalis T2] gi|256597440|gb|EEU16616.1| mraW [Enterococcus faecalis ATCC 4200] gi|256682998|gb|EEU22693.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Enterococcus faecalis T3] gi|256947578|gb|EEU64210.1| mraW [Enterococcus faecalis DS5] gi|256950669|gb|EEU67301.1| mraW [Enterococcus faecalis Merz96] gi|256953081|gb|EEU69713.1| mraW [Enterococcus faecalis HIP11704] gi|256985908|gb|EEU73210.1| mraW [Enterococcus faecalis JH1] gi|256989272|gb|EEU76574.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis E1Sol] gi|256991930|gb|EEU79232.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis Fly1] gi|256994378|gb|EEU81680.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Enterococcus faecalis D6] gi|256998210|gb|EEU84730.1| S-adenosyl-methyltransferase mraW [Enterococcus faecalis CH188] gi|257157436|gb|EEU87396.1| mraW [Enterococcus faecalis ARO1/DG] gi|257160407|gb|EEU90367.1| S-adenosyl-methyltransferase mraW [Enterococcus faecalis T11] gi|257163062|gb|EEU93022.1| S-adenosyl-methyltransferase mraW [Enterococcus faecalis X98] gi|294452405|gb|EFG20844.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis PC1.1] gi|300850481|gb|EFK78230.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TUSoD Ef11] gi|323480228|gb|ADX79667.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis 62] Length = 318 Score = 169 bits (428), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 108/316 (34%), Positives = 172/316 (54%), Gaps = 19/316 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VLL++ + L P V +D T G G+S ++ A D+D A++ + Sbjct: 7 HYTVLLKETVDGLQVKPDGVYVDCTLGGAGHSEYLLTQLNEHGHLYAFDQDQKALAHAKT 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++ Y K Q + ++ F +++ + + GV DG+++DLGVSS Q+D +RGFS+ + Sbjct: 67 RLQKYVDKGQVTFIKSNFRNIKEELAEHGVFHVDGILYDLGVSSPQLDEAERGFSYHQDA 126 Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM ++A +VVN + +L +I GEEK + +IA I + R+ P +TT + Sbjct: 127 PLDMRMDQDAPLTAREVVNTYSYSELVKIFFRYGEEKFSKQIAREIERVREKQPIETTGE 186 Query: 191 LSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I+ + ++ HPA R FQA+RI VN+E+ + + L A L G + V++ Sbjct: 187 LVEIIKTAIPAPARRKGGHPAKRIFQAIRIAVNDELGAVEESLEQAIDLLAKNGRISVIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPS-NAHPAVFQS----ITKKVVVPTQEDVAFNR 304 FHSLEDR+VK F S V+ + P P FQ IT+K ++P+ +++ N Sbjct: 247 FHSLEDRIVKTMFKEYS----TVQDLPPGIPVVPEEFQPELKVITRKPILPSDSELSENN 302 Query: 305 RSRSAKLRAGMRTVER 320 RSRSAKLR + R Sbjct: 303 RSRSAKLRIAEKIKSR 318 >gi|237709504|ref|ZP_04539985.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 9_1_42FAA] gi|229456560|gb|EEO62281.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 9_1_42FAA] Length = 304 Score = 169 bits (428), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 110/300 (36%), Positives = 167/300 (55%), Gaps = 16/300 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76 H+PVLL + + +N PG + +DATFG GG+S+ S +++ + D+D + Sbjct: 9 HIPVLLNESVDGMNIQPGGIYVDATFGGGGHSKEILSRLDSTAHLYSFDQDE---DAEKN 65 Query: 77 TMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + D +F+ ++ F L + Y + VD ++ DLGVSS D +RGFSF+ G L Sbjct: 66 IVSD--SRFTFVRSNFRYLSNFLRYYDVEEVDAILADLGVSSHHFDDSERGFSFRFEGKL 123 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +G++A+DVVN + + L I + GE K + ++A IVK R T D Sbjct: 124 DMRMNKRAGMTAADVVNTYDEERLANIFYLYGELKNSRKLASTIVKARGVKQIITIGDFL 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ F + + FQALRI VN E+E L + L +A KALK GG L+V+++HS Sbjct: 184 EVIKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLYAATKALKPGGRLVVITYHS 241 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK + + + A + + P F+ + KV+V E+V N RSRSAKLR Sbjct: 242 LEDRMVKNIMKTGNIEGKAEQDFFGNVQTP--FKLVNSKVIVAGNEEVTCNPRSRSAKLR 299 >gi|299143950|ref|ZP_07037030.1| S-adenosyl-methyltransferase MraW [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518435|gb|EFI42174.1| S-adenosyl-methyltransferase MraW [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 312 Score = 169 bits (428), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 112/314 (35%), Positives = 166/314 (52%), Gaps = 22/314 (7%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 +H VL E I LLN + +D T G G+S K+ + +I +D+D A+ + Sbjct: 4 NHKSVLFEDTINLLNIKENGIYVDGTIGGAGHSSQILKILNGTGLLIGIDQDLAALEKSK 63 Query: 76 ETMRDY-KEQFSLFQAT---FSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E + + + LF + F+ + D + VDG + DLGVSS Q D GDRGFS+ Sbjct: 64 EVLGELGYNNYKLFNSNYKDFNVILDSLEIDKVDGFLLDLGVSSYQFDEGDRGFSYNYDA 123 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM + SA D+VN + +++ +IL EEK A RIA IVK R P TT + Sbjct: 124 KLDMRMDTNAAFSAWDIVNGYSKEEIAKILWDYSEEKWAGRIADFIVKSRIKKPIDTTFE 183 Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I+ + ++ + HPA ++FQALRI NNE++ L L L GG + V+S Sbjct: 184 LVEIIKNAIPAAARKKKGHPAKKTFQALRIETNNELDVLRNTLGRMIDRLNPGGRIAVIS 243 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-------FQSITKKVVVPTQEDVAF 302 FHSLEDR+VK+ F K + + P A P + IT+K +V +++++ Sbjct: 244 FHSLEDRIVKETF-----KYYYLDCICPEKA-PVCNCGKKREIEIITRKPIVASEKELIE 297 Query: 303 NRRSRSAKLRAGMR 316 N R+ SAKLR + Sbjct: 298 NNRAHSAKLRVAEK 311 >gi|226941977|ref|YP_002797051.1| S-adenosyl-methyltransferase MraW [Laribacter hongkongensis HLHK9] gi|263456276|sp|C1D5M5|RSMH_LARHH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|226716904|gb|ACO76042.1| MraW [Laribacter hongkongensis HLHK9] Length = 317 Score = 169 bits (428), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 117/308 (37%), Positives = 171/308 (55%), Gaps = 15/308 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMG--SNVIALDRDPFAVSCGQE 76 HV VLL++ + L P V +D TFG GG+SR ++G ++A D+DP A++ E Sbjct: 7 HVTVLLQEAVEALAIRPDGVYVDCTFGRGGHSRLVLSRLGPAGRLVAFDKDPQAIAVATE 66 Query: 77 TMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + ++ F+ L D + VDGV+ DLGVSS QID RGFSF+ PL Sbjct: 67 L---DDPRLTIVHEGFAGLDRELDRLGIDKVDGVLMDLGVSSPQIDDASRGFSFRFDAPL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF-QTTQDL 191 DMRM + G +A+D + +A+ ++ ++ GEE+ A+ IA AIV R F TT +L Sbjct: 124 DMRMDTTRGETAADWLARADEAEIRTVIRDYGEERFAASIARAIVANRLEGQFLTTTGEL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++L + V + + PATR+FQA+RIF+N E++EL L A + L+ GG L+V++FH Sbjct: 184 AALCARCVRTREKGQ-DPATRTFQAIRIFINRELDELQAVLPQAVRRLRPGGRLVVIAFH 242 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAH--PAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK F S R + P A P + K V E +A N R+RSA Sbjct: 243 SLEDRIVKLFLRDASSPPELPRGL-PVRAADLPEPPLRLVGKPVREGDEQLARNPRARSA 301 Query: 310 KLRAGMRT 317 +R R+ Sbjct: 302 IMRVAERS 309 >gi|19705032|ref|NP_602527.1| S-adenosyl-methyltransferase MraW [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|21759278|sp|Q8R6F5|RSMH_FUSNN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|19712944|gb|AAL93826.1| Methyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 314 Score = 169 bits (428), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 109/306 (35%), Positives = 173/306 (56%), Gaps = 20/306 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+PVL + + L P +D T G G +S + S+ +I++D+D A+ ++ Sbjct: 9 HIPVLYYETLDNLVINPDGTYIDCTLGGGSHSEGILERLSDKGLLISIDQDTNAIEYSKK 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + ++ +F+ F + GVD G++ D+GVSS Q+D DRGFS++ L Sbjct: 69 RLEKFGSKWKVFKGNFENIDTIAYMAGVDKVDGILMDIGVSSKQLDDPDRGFSYRYDVKL 128 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ ISA DVVN + + L++I+ GEE+ A +IA IV+ R+S+P + T DL Sbjct: 129 DMRMNTDQKISAYDVVNTYSEEQLSKIIFEYGEERHARKIAKLIVEERKSSPIEKTSDLI 188 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +LI++ + + HPA ++FQA+RI VN E+E L + A + LK GG L +++FHS Sbjct: 189 TLIKRA--YPERASKHPAKKTFQAIRIEVNRELEVLENAMSKAVELLKVGGRLAIITFHS 246 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV------FQSITKKVVVPTQEDVAFNRRS 306 LEDR+VK F K +A P + V F+ ITKK ++P +++ N R+ Sbjct: 247 LEDRIVKNKF-----KDLATACKCPKDIPICVCGGVKKFEIITKKPIIPIDDELKNNNRA 301 Query: 307 RSAKLR 312 S+KLR Sbjct: 302 HSSKLR 307 >gi|289449724|ref|YP_003474673.1| S-adenosyl-methyltransferase MraW [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184271|gb|ADC90696.1| S-adenosyl-methyltransferase MraW [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 362 Score = 169 bits (428), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 109/303 (35%), Positives = 168/303 (55%), Gaps = 10/303 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HVPVLL + + L+ +D T G G+S + + G + A D+DP A Sbjct: 40 HVPVLLTECLKALDLKANGTYVDCTAGGAGHSAAILQRLGSGGRLFAFDKDPTARQAAAA 99 Query: 77 TMRDYKE--QFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + K + L A F+ L++ + + VDG++ DLGVSS Q+D G+RGF+++ G Sbjct: 100 KLAQVKTAATYELIAADFASLREELSKRNVFAVDGILADLGVSSPQLDTGERGFAYRLEG 159 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ G +A+D++ + LTRI+ GEE+ A+RIA A+VK R++ P T + Sbjct: 160 PLDMRMNPTCGRTAADILRLEDQATLTRIMREYGEERYAARIAAAVVKTRETKPLTGTGE 219 Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L LI K V ++ + HPA R FQ+LRI VN+E+ L + L+ A LK G L++++ Sbjct: 220 LVDLICKAVPAAARREKQHPAKRVFQSLRIAVNDELGALRKLLQQAPGLLKPDGHLVIIT 279 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRLVK+ F + + ++ +V + ++A N RSRSA Sbjct: 280 FHSLEDRLVKQAFRRWERPCRCPSGLPCVCGLASQGKADPPHGLVAGKTELAENPRSRSA 339 Query: 310 KLR 312 ++R Sbjct: 340 RVR 342 >gi|57866678|ref|YP_188327.1| S-adenosyl-methyltransferase MraW [Staphylococcus epidermidis RP62A] gi|242242461|ref|ZP_04796906.1| S-adenosyl-methyltransferase MraW [Staphylococcus epidermidis W23144] gi|68565427|sp|Q5HQ13|RSMH_STAEQ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|57637336|gb|AAW54124.1| S-adenosyl-methyltransferase MraW [Staphylococcus epidermidis RP62A] gi|242234035|gb|EES36347.1| S-adenosyl-methyltransferase MraW [Staphylococcus epidermidis W23144] gi|319401527|gb|EFV89737.1| S-adenosyl-methyltransferase MraW [Staphylococcus epidermidis FRI909] Length = 311 Score = 169 bits (428), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 103/305 (33%), Positives = 166/305 (54%), Gaps = 11/305 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 HV V+L + I LN V +D T G G++ ++ +IA+D+D A+ +E Sbjct: 4 HVSVMLNETIDYLNIKEDGVYVDCTLGGAGHALYLLNQLNDKGRLIAIDQDLTAIENAKE 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++++ + + F +L + + + VDG+ +DLGVSS Q+D +RGFS+ L Sbjct: 64 VLKEHLHKVTFVHNNFRELTNILNELEIDKVDGIYYDLGVSSPQLDVPERGFSYHNDAKL 123 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM +SA +VVNQ + + L +I GEEK + +IA I R+ P +TT +L Sbjct: 124 DMRMDQTQSLSAYEVVNQWSYEALVKIFYRYGEEKFSKQIARRIEAHREQQPIETTLELV 183 Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I++ + ++ HPA R FQA+RI VN+E+ + A + +K GG + V++FH Sbjct: 184 DVIKEGIPAKARRKGGHPAKRVFQAIRIAVNDELSAFEDSVEQAIECVKVGGRISVITFH 243 Query: 252 SLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDRL K+ F + V +IP P + + + +K + T +D+ N R+RSA Sbjct: 244 SLEDRLCKQIFQEFEKGPDVPRGLPVIPEAYTPKL-KRVNRKPITATDDDLNENNRARSA 302 Query: 310 KLRAG 314 KLR Sbjct: 303 KLRVA 307 >gi|237743305|ref|ZP_04573786.1| methyltransferase [Fusobacterium sp. 7_1] gi|229433084|gb|EEO43296.1| methyltransferase [Fusobacterium sp. 7_1] Length = 314 Score = 169 bits (428), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 108/313 (34%), Positives = 175/313 (55%), Gaps = 20/313 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+PVL + + L P + +D T G G +S + S+ +I++D+D A+ ++ Sbjct: 9 HIPVLYYETLDNLVINPDGIYIDCTLGGGSHSEGILERLSDKGLLISIDQDSTAIEYSKK 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + ++ +F+ F + GVD G++ D+GVSS Q+D RGFS++ L Sbjct: 69 RLEKFGSKWKVFKGNFENIDTIAYTAGVDKVDGILMDIGVSSKQLDDPKRGFSYRYDVKL 128 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ ISA D+VN + L++I+ GEE+ A +IA IV+ R+S+P + T DL Sbjct: 129 DMRMNTDQKISAYDIVNTYTEEQLSKIIFEYGEERHARKIAKLIVEERKSSPIEKTSDLI 188 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +LI++ + + HPA ++FQA+RI VN E+E L + A + LK GG L +++FHS Sbjct: 189 TLIKRA--YPERASKHPAKKTFQAIRIEVNRELEVLGNAISKAAELLKVGGRLAIITFHS 246 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV------FQSITKKVVVPTQEDVAFNRRS 306 LEDR+VK F K +A P + V F+ ITKK ++P +++ N R+ Sbjct: 247 LEDRIVKNKF-----KDLATACKCPKDIPICVCGGVKKFEIITKKPIIPIDDELKNNNRA 301 Query: 307 RSAKLRAGMRTVE 319 S+KLR R ++ Sbjct: 302 HSSKLRILERILD 314 >gi|297170224|gb|ADI21262.1| predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [uncultured myxobacterium HF0010_08B07] Length = 285 Score = 169 bits (427), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 101/283 (35%), Positives = 157/283 (55%), Gaps = 22/283 (7%) Query: 39 VILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95 + LD TFG GG+++ K+ S +I+ D D A+ + D K F + FS + Sbjct: 11 LYLDCTFGRGGHTKKILDKLSSEGQLISFDLDDDAMKVAKNI--DNK-NFKFIKTNFSMI 67 Query: 96 QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVK 154 DYV D + GV+ D GVSS Q+D +RGFSFQ GPLDMR + ++ D++ + K Sbjct: 68 DDYVEDDSLSGVLIDCGVSSPQLDEPERGFSFQTKGPLDMRFNQEQKLTCKDIIENYSEK 127 Query: 155 DLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSF 214 ++ IL GEEK++ RIA IVK+R+ T L+ +I+ + + HPAT+SF Sbjct: 128 EIATILWKFGEEKESRRIAKLIVKQREQNVIDNTLVLAEIIKTAK--TVKTKKHPATKSF 185 Query: 215 QALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH 274 QALR+ VN+E E L L + L G L++++FHSLEDR+ K+ F + Sbjct: 186 QALRMAVNSEFENLTTCLDRIKDKLTKSGKLVIITFHSLEDRIAKQTFKPKIN------- 238 Query: 275 MIPSNAHPAVFQSITK-----KVVVPTQEDVAFNRRSRSAKLR 312 P +++ ++ K++ P+QE+++ N R+RSAK+R Sbjct: 239 -FHEKNLPLIYEDVSDKFKISKIIYPSQEEISMNPRARSAKMR 280 >gi|317504120|ref|ZP_07962122.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Prevotella salivae DSM 15606] gi|315664792|gb|EFV04457.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Prevotella salivae DSM 15606] Length = 316 Score = 169 bits (427), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 114/306 (37%), Positives = 168/306 (54%), Gaps = 17/306 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFA------ 70 HVPVLL++ + LN G V +D TFG GG+S S +++ + D+D A Sbjct: 9 HVPVLLKESVDGLNIQSGGVYVDVTFGGGGHSSEILSRLDEQAHLYSFDQDADAEQNVMR 68 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSF 127 G E +F+ ++ F L++++ GV DG++ DLGVSS D RGFSF Sbjct: 69 SEVGAERRFVDDSRFTFVRSNFRYLKNWMRYYGVESIDGLLADLGVSSHHFDDESRGFSF 128 Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + LDMRM+ +G +A+D+VN + + L + + GE KQ+ R+A A+VK R Sbjct: 129 RFDAQLDMRMNKRAGKTAADIVNDYDEEALANLFYLYGEIKQSRRLAAAVVKARSQQHIA 188 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 TTQDL +++ F + + FQALRI VN+E++ L + L+SA + LK GG L Sbjct: 189 TTQDLLGILEPI--FKREREKKDLAKVFQALRIEVNHEMDALKEMLKSATELLKPGGRLS 246 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+++HSLEDR+VK ++G V R F I KV+VP++ + N RS Sbjct: 247 VITYHSLEDRIVKNIM--KTGNVEGKRIQDFYGRIETPFTLINNKVIVPSENEQQENPRS 304 Query: 307 RSAKLR 312 RSAKLR Sbjct: 305 RSAKLR 310 >gi|290969165|ref|ZP_06560690.1| S-adenosyl-methyltransferase MraW [Megasphaera genomosp. type_1 str. 28L] gi|290780671|gb|EFD93274.1| S-adenosyl-methyltransferase MraW [Megasphaera genomosp. type_1 str. 28L] Length = 310 Score = 169 bits (427), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 116/307 (37%), Positives = 174/307 (56%), Gaps = 12/307 (3%) Query: 20 HVPVLLEKVIA-LLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPFAVSCGQ 75 HV VL E+ +A +L P G + +D T G GG++ + + + VI LDRD A+ Sbjct: 5 HVSVLREETVAAVLGPKNG-IYVDCTLGGGGHAATLAAQLQEEALVIGLDRDRDALRAAA 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 ++ + L Q F L D + + VDG++FDLGVS Q+D +RGFS+ + GP Sbjct: 64 ARLQGVPCRTRLVQRNFQYLADVLQELHLPYVDGIMFDLGVSGYQLDTPERGFSYMQDGP 123 Query: 133 LDMRMS--CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM C+ + AS VVN + + L ++ GEE+ A RIA IV+ R+ PF T + Sbjct: 124 LDMRMDQRCA-VPASTVVNTYSEEALYSLIKAYGEERWAKRIAAFIVRARRQKPFSRTAE 182 Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I++ + ++ + HPA R+FQALRI VNNE+ L L +A + LK GG + V++ Sbjct: 183 LVYVIKQAIPAGARRDGPHPAKRTFQALRIEVNNELGILHDALTTAVQHLKPGGKIGVIT 242 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDR+ K+ F + + + H + ++VV P+ ++VA N R+RSA Sbjct: 243 FHSLEDRITKQTFKELATDCICPPDLPVCTCHHRASIRVRRQVVTPSPQEVADNPRARSA 302 Query: 310 KLRAGMR 316 KLR R Sbjct: 303 KLRVAER 309 >gi|288800555|ref|ZP_06406013.1| S-adenosyl-methyltransferase MraW [Prevotella sp. oral taxon 299 str. F0039] gi|288332768|gb|EFC71248.1| S-adenosyl-methyltransferase MraW [Prevotella sp. oral taxon 299 str. F0039] Length = 312 Score = 169 bits (427), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 112/305 (36%), Positives = 166/305 (54%), Gaps = 18/305 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSC--- 73 H+PVLL + I LN PG + +D T G GG+S K + +++ + D+D A + Sbjct: 9 HIPVLLNESIDGLNIQPGGIYVDVTMGGGGHSHEILKRLDVNAHLYSFDQDADAEANLKQ 68 Query: 74 --GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQ 128 G + ++D E+F+ ++ F L++++ GV DG++ DLGVSS D RGFSF+ Sbjct: 69 NHGDDLLKD--ERFTFVRSNFRYLKNWMRYHGVEQIDGLLADLGVSSHHFDDESRGFSFR 126 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 PLDMRM+ S +A+D+VN + L I + GE K + +IA +VK RQ +T Sbjct: 127 FESPLDMRMNKRSSRTAADIVNNYAEEALADIFYLYGELKNSRKIASLLVKARQEKRIET 186 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T D ++++ F + + FQALRI VN E+ L + L S LK GG L V Sbjct: 187 TGDFIAVVEPL--FKREREKKDLAKLFQALRIEVNGEMSALKELLMSVVDMLKPGGRLSV 244 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +++HSLEDR+VK ++G + F+ I KV+VPT E+ N RSR Sbjct: 245 ITYHSLEDRIVKNIM--KAGNIEGKIEQDFFGCINTPFKLINNKVIVPTDEEQEQNPRSR 302 Query: 308 SAKLR 312 SAKLR Sbjct: 303 SAKLR 307 >gi|237742793|ref|ZP_04573274.1| S-adenosyl-methyltransferase mraW [Fusobacterium sp. 4_1_13] gi|229430441|gb|EEO40653.1| S-adenosyl-methyltransferase mraW [Fusobacterium sp. 4_1_13] Length = 314 Score = 169 bits (427), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 110/313 (35%), Positives = 176/313 (56%), Gaps = 20/313 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+PVL + + L P + +D T G G +S + S+ +I++D+D A+ ++ Sbjct: 9 HIPVLYYETLDNLVINPDGIYIDCTLGGGSHSEGILERLSDKGLLISIDQDTNAIEYSKK 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + ++ +F+ F + GVD G++ D+GVSS Q+D RGFS++ L Sbjct: 69 RLEKFGSKWKVFKGNFENIDTIAYMAGVDKVDGILMDIGVSSKQLDDPKRGFSYRYDVKL 128 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ ISA DVVN + + L++I+ GEE+ A +IA IV+ R+S+P + T DL Sbjct: 129 DMRMNTEQKISAYDVVNTYSEEQLSKIIFEYGEERHARKIAKLIVEERKSSPIEKTSDLI 188 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +LI++ + + HPA ++FQA+RI VN E+E L + A + LK GG L +++FHS Sbjct: 189 ALIKRA--YPERASKHPAKKTFQAIRIEVNRELEVLENAMSKAVELLKVGGRLAIITFHS 246 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV------FQSITKKVVVPTQEDVAFNRRS 306 LEDR+VK F K +A P + V F+ ITKK ++P +++ N RS Sbjct: 247 LEDRIVKNKF-----KDLATACKCPKDIPICVCGGVKKFEIITKKPIIPIDDELKNNNRS 301 Query: 307 RSAKLRAGMRTVE 319 S+KLR R ++ Sbjct: 302 HSSKLRILERILD 314 >gi|42561121|ref|NP_975572.1| S-adenosyl-methyltransferase MraW [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|115311585|sp|P62473|RSMH_MYCMS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|42492618|emb|CAE77214.1| MraW methylase family protein [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|301320523|gb|ADK69166.1| S-adenosyl-methyltransferase MraW [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 308 Score = 169 bits (427), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 108/306 (35%), Positives = 164/306 (53%), Gaps = 21/306 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+PVLL++ I LN P + +D T G G+S K + + A+D+D A+ +E Sbjct: 4 HIPVLLKESIEYLNIKPDGIYVDCTLGRAGHSSEILKKLNQKGFLYAIDQDQIAIDQAKE 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + F L Q FS L + VDG+++DLGVSS QID RGFS++ GPL Sbjct: 64 KLEQINNNFLLIQGNFSNLSALLAINHVFNVDGILYDLGVSSPQIDIASRGFSYKMDGPL 123 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL- 191 DMRM S ++A V+N + ++ IL GEE + I+ IV+ R P +T +L Sbjct: 124 DMRMDLNSTLTAHQVINTYSESQISEILFKYGEESFSKSISKKIVESR---PINSTLELV 180 Query: 192 ----SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 S+L QK + K HPA ++FQALRI++NNE+ L L+ A L + + V Sbjct: 181 EIIKSALPQKVLKQKK----HPAKKTFQALRIYINNELIALENSLKQALDLLNSKARICV 236 Query: 248 VSFHSLEDRLVKKFFASRSGKVMA-VRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRR 305 ++FHSLE+++VK F + + + +P A + F+ + KK + P+ ++ N R Sbjct: 237 ITFHSLEEKIVKNIFNNSTNYYQEQLLSNLPIKADLNSKFKLVIKKPIKPSLLELEQNHR 296 Query: 306 SRSAKL 311 S SAKL Sbjct: 297 SHSAKL 302 >gi|227517912|ref|ZP_03947961.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0104] gi|227074666|gb|EEI12629.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0104] Length = 322 Score = 169 bits (427), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 107/308 (34%), Positives = 170/308 (55%), Gaps = 19/308 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VLL++ + L P V +D T G G+S ++ A D+D A++ + Sbjct: 11 HYTVLLKETVDGLQVKPDGVYVDCTLGGAGHSEYLLTQLNEHGHLYAFDQDQKALAHAKT 70 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++ Y K Q + ++ F +++ + + GV DG+++DLGVSS Q+D +RGFS+ + Sbjct: 71 RLQKYVDKGQVTFIKSNFRNIKEELAEHGVFHVDGILYDLGVSSPQLDEAERGFSYHQDA 130 Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM ++A +VVN + +L +I GEEK + +IA I + R+ P +TT + Sbjct: 131 PLDMRMDQDAPLTAREVVNTYSYGELVKIFFRYGEEKFSKQIAREIERVREKQPIETTGE 190 Query: 191 LSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I+ + ++ HPA R FQA+RI VN+E+ + + L A L G + V++ Sbjct: 191 LVEIIKTAIPAPARRKGGHPAKRIFQAIRIAVNDELGAVEESLEQAIDLLAKNGRISVIT 250 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPS-NAHPAVFQS----ITKKVVVPTQEDVAFNR 304 FHSLEDR+VK F S V+ + P P FQ IT+K ++P+ +++ N Sbjct: 251 FHSLEDRIVKTMFKEYS----TVQDLPPGIPVVPEEFQPELKVITRKPILPSDSELSENN 306 Query: 305 RSRSAKLR 312 RSRSAKLR Sbjct: 307 RSRSAKLR 314 >gi|332358033|gb|EGJ35866.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus sanguinis SK1056] Length = 316 Score = 169 bits (427), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 106/309 (34%), Positives = 175/309 (56%), Gaps = 14/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGS--NVIALDRDPFAVSCGQE 76 H+ VLL + + L P + +DAT G G+S ++G ++ A D+D A+ ++ Sbjct: 7 HITVLLHETVDQLAVKPDGIYVDATLGGAGHSEYLLSQLGDEGHLYAFDQDQTAIDNAKK 66 Query: 77 TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y E+ + + F L+ + + GV DG+ +DLGVSS Q+D +RGFS+++ Sbjct: 67 RLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQRERGFSYKQDA 126 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ + ++A DVVN + +DL RI GE+K + +IA I + R P +TT + Sbjct: 127 PLDMRMNREAALTAFDVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQARSVKPIETTTE 186 Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ +I K+ +K + HPA + FQA+RI VN+E+ + ++ A L G + V+ Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGATDESIQQAIDLLAVDGRIAVI 245 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F S V IP P + + +++K ++P++E++ N R+ Sbjct: 246 TFHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKL-ELVSRKPILPSKEELESNNRAH 304 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 305 SAKLRVARK 313 >gi|261881137|ref|ZP_06007564.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Prevotella bergensis DSM 17361] gi|270332142|gb|EFA42928.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Prevotella bergensis DSM 17361] Length = 337 Score = 169 bits (427), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 113/303 (37%), Positives = 164/303 (54%), Gaps = 18/303 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFA---VSC 73 HVPVLL++ + L+ P +D TFG GG+SR S ++ + D+D A +S Sbjct: 38 HVPVLLKESVDGLDIKPDGTYVDVTFGGGGHSREILSRLHQDGHLYSFDQDADAEQNLSG 97 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130 ET+ + F+ ++ F L++++ GV DG++ DLGVSS D RGFSF+ Sbjct: 98 SGETL----DNFTFVRSNFRYLKNWMRYYGVEHIDGLLADLGVSSHHFDDEARGFSFRFD 153 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM+ G +A+DVVN + L I + GE K + RIA +VK R TTQ Sbjct: 154 APLDMRMNKRGGQTAADVVNNYEEEQLADIFYLYGELKSSRRIASVLVKERNQGKILTTQ 213 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 D + +Q F + + FQALRI VN E+ L + L +A L GG L V++ Sbjct: 214 DFVNAVQPL--FRRGREKKDMAKLFQALRIEVNQEMAALREMLTAATDLLAPGGRLSVIT 271 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 +HSLEDR+VK + + + + P F+ + KV+VP+ E++A N RSRSA Sbjct: 272 YHSLEDRMVKNMMKTGNAEGKLRQDFFGRVECP--FRLVNNKVIVPSDEELARNPRSRSA 329 Query: 310 KLR 312 KLR Sbjct: 330 KLR 332 >gi|262195180|ref|YP_003266389.1| S-adenosyl-methyltransferase MraW [Haliangium ochraceum DSM 14365] gi|262078527|gb|ACY14496.1| S-adenosyl-methyltransferase MraW [Haliangium ochraceum DSM 14365] Length = 319 Score = 169 bits (427), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 112/310 (36%), Positives = 179/310 (57%), Gaps = 21/310 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H+PVL E+V+A ++P PG V D T G GG++ + + + +DRD A++ Q Sbjct: 9 HLPVLKEEVLAHMSPRPGGVYCDGTLGGGGHAGAVLARANPDGRLYGIDRDATALAAAQR 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + D+ E+ + T+ + + + G +DG++ D+G SS Q D +RGFSF + GP+ Sbjct: 69 ALADFGERVQFLRGTYGYADELLAEAGAPPLDGILLDIGPSSPQFDRAERGFSFLRPGPI 128 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM SG +A D++ + +L IL GEE+ + RIA I + +TT DL+ Sbjct: 129 DMRMDQSSGETALDLMRRLGPGELADILWSFGEERFSKRIAARIKDAVRDHRLETTTDLA 188 Query: 193 SLIQKTVYFS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +L++ + S + + HPAT++FQALRI VN E+++LA+ LR L GG +++SF Sbjct: 189 ALVEDAIPASVRRQMKTHPATKTFQALRIAVNGELDQLARFLRVFPPLLAPGGRCVIISF 248 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI-------TKKVVVPTQEDVAFN 303 HSLEDRLVK+ F + +A +P + A + I T+K V +++++A N Sbjct: 249 HSLEDRLVKRAF-----RDLAWSSRLPPDLARAAGERIEPVCVPVTRKAVFASEDEIASN 303 Query: 304 RRSRSAKLRA 313 R+RSA+LRA Sbjct: 304 PRARSARLRA 313 >gi|25010349|ref|NP_734744.1| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae NEM316] gi|30173049|sp|Q8E782|RSMH_STRA3 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|23094701|emb|CAD45920.1| unknown [Streptococcus agalactiae NEM316] gi|319744247|gb|EFV96612.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus agalactiae ATCC 13813] Length = 315 Score = 169 bits (427), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 105/308 (34%), Positives = 171/308 (55%), Gaps = 12/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQE 76 H+ VLL + + +L+ P + +DAT G G+S ++G + + A D+D A+ Sbjct: 7 HITVLLHETVDMLDIKPDGIYVDATLGGAGHSEYLLSQLGPDGHLYAFDQDQKAIDNAHI 66 Query: 77 TMRDYKE--QFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++ Y + Q + + F L + GV +G+ +DLGVSS Q+D +RGFS+++ Sbjct: 67 RLKKYVDTGQVTFIKDNFRNLSSNLKALGVSEINGICYDLGVSSPQLDERERGFSYKQDA 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ ++A DVVN + DL RI GE+K + +IA I + R P TT + Sbjct: 127 PLDMRMNREQSLTAYDVVNTYSYHDLVRIFFKYGEDKFSKQIARKIEQVRAEKPISTTTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+ + + + HPA + FQA+RI VN+E+ + ++ A L G + V++ Sbjct: 187 LAEIIKSSKSAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDLLAVDGRISVIT 246 Query: 250 FHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDRL K+ F S +V IP + P + + + +K ++P+QE++ N R+ S Sbjct: 247 FHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLQPKM-ELVNRKPILPSQEELEANNRAHS 305 Query: 309 AKLRAGMR 316 AKLR R Sbjct: 306 AKLRVARR 313 >gi|290581041|ref|YP_003485433.1| hypothetical protein SmuNN2025_1515 [Streptococcus mutans NN2025] gi|254997940|dbj|BAH88541.1| conserved hypothetical protein [Streptococcus mutans NN2025] Length = 316 Score = 169 bits (427), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 107/305 (35%), Positives = 170/305 (55%), Gaps = 14/305 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGS--NVIALDRDPFAVSCGQE 76 H+ VLL + I +L+ P + +DAT G G+S K+G ++ D+D A+ + Sbjct: 7 HITVLLHETIDMLDIKPDGIYVDATLGGAGHSECLLSKLGKEGHLYCFDQDQKAIDNAKI 66 Query: 77 TMRDYKE--QFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++ Y + Q S + F L+ + D+G+ DG+ +DLGVSS Q+D +RGFS++K Sbjct: 67 RLQQYVKTGQVSFIKDNFRHLKSRLADEGIYEIDGICYDLGVSSPQLDERERGFSYKKDA 126 Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ ++A DVVN + +DL R+ GE+K + +IA I R+ +TT + Sbjct: 127 PLDMRMNQDAQLTAFDVVNTYDYRDLVRLFFKYGEDKFSKQIARKIESARKEKLIETTAE 186 Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ +I K+ +K + HPA + FQA+RI VN+E+ + L A L G + V+ Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAAEESLTQALDLLALNGRIAVI 245 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F + V +P N P F + +K ++P +++ N R+ Sbjct: 246 TFHSLEDRLTKQLFKEVTTLDVPKGLPFVPENLQPK-FSLVNRKPILPNVRELSENNRAH 304 Query: 308 SAKLR 312 SAKLR Sbjct: 305 SAKLR 309 >gi|326334986|ref|ZP_08201186.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692791|gb|EGD34730.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 314 Score = 169 bits (427), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 114/306 (37%), Positives = 167/306 (54%), Gaps = 19/306 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+PVLL + I L P +DATFG GG+SR+ S+ +IA D+DP A E Sbjct: 7 HIPVLLSQTIEGLALNPEGTYVDATFGGGGHSRAILAQLSHNGRLIAFDQDPQAQGNIIE 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 E+F L F ++ ++ GV +GV+ D GVSS Q D RGFS + PL Sbjct: 67 -----DERFMLIPQNFRYIKRFLRFYGVRQVEGVLADFGVSSYQFDTAQRGFSTRFEAPL 121 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +SA +VVN +L+ +L GE + A +IA ++ +RQ +P +TT DL Sbjct: 122 DMRMNQEQPLSAFEVVNTYTESELSELLYRYGELRNAKQIARTLIAQRQISPIRTTMDLR 181 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 + +Q + K N++ +QA+RI VN E+ L + L + +K GG + ++S+HS Sbjct: 182 NAVQAFLPKGKENKVLAPL--YQAIRIEVNQELAALEEFLLQLPEVVKQGGRIALISYHS 239 Query: 253 LEDRLVKKFFASRSGKVMA-VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDRLVK+F R G+ + N P + K +VP+ E++A N R+RSAKL Sbjct: 240 LEDRLVKRFI--RDGQCSGEPQKDFYGNTFPPFVK--IGKPIVPSPEEIALNNRARSAKL 295 Query: 312 RAGMRT 317 R RT Sbjct: 296 RIAERT 301 >gi|331703577|ref|YP_004400264.1| S adenosyl methyltransferase MraW [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328802132|emb|CBW54286.1| S adenosyl methyltransferase MraW [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 308 Score = 169 bits (427), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 108/306 (35%), Positives = 164/306 (53%), Gaps = 21/306 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+PVLL++ I LN P + +D T G G+S K + + A+D+D A+ +E Sbjct: 4 HIPVLLKESIEYLNIKPDGIYVDCTLGRAGHSSEILKRLNQKGFLYAIDQDQIAIDQAKE 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + F L Q FS L + VDG+++DLGVSS QID RGFS++ GPL Sbjct: 64 KLEQINNNFLLIQGNFSNLSALLAINHVFNVDGILYDLGVSSPQIDIASRGFSYKMDGPL 123 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL- 191 DMRM S ++A V+N + ++ IL GEE + I+ IV+ R P +T +L Sbjct: 124 DMRMDLNSTLTAHQVINTYSESQISEILFKYGEESFSKSISKKIVESR---PINSTLELV 180 Query: 192 ----SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 S+L QK + K HPA ++FQALRI++NNE+ L L+ A L + + V Sbjct: 181 EIIKSALPQKVLKQKK----HPAKKTFQALRIYINNELIALENSLKQALDLLNSKARICV 236 Query: 248 VSFHSLEDRLVKKFFASRSGKVMA-VRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRR 305 ++FHSLE+++VK F + + + +P A + F+ + KK + P+ ++ N R Sbjct: 237 ITFHSLEEKIVKNIFNNSTNYYQEQLLSNLPIKADLNSKFKLVIKKPIKPSLLELEQNHR 296 Query: 306 SRSAKL 311 S SAKL Sbjct: 297 SHSAKL 302 >gi|169348415|ref|ZP_02866353.1| hypothetical protein CLOSPI_00130 [Clostridium spiroforme DSM 1552] gi|169293884|gb|EDS76017.1| hypothetical protein CLOSPI_00130 [Clostridium spiroforme DSM 1552] Length = 309 Score = 168 bits (426), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 103/303 (33%), Positives = 166/303 (54%), Gaps = 10/303 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQE 76 DHV VLL + I LN + +D T G GG+S K ++ D+D A+ ++ Sbjct: 3 DHVTVLLNEAIEGLNINEDGIYVDCTLGGGGHSCEILKRLTTGHLYCFDQDYTAIEAAKK 62 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + + +++ + F +++ + + VDG++FDLGVSS Q D G RGFS+ L Sbjct: 63 RLSEISDNYTIIYSNFVNIKEKLEELNVHKVDGILFDLGVSSPQFDTGSRGFSYNYDARL 122 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + + A +VN + + L IL +EK A RIA I + R + P +TT +L Sbjct: 123 DMRMDINNPLDAYYIVNNWSYEQLVEILFKYADEKFAKRIARKIEQARSNKPIETTFELV 182 Query: 193 SLIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I++ + + + HPA R+FQALRI VN+E+ + L+ A L + G + V++FH Sbjct: 183 EIIKEAIPAAARRKGGHPAKRTFQALRIAVNDELNVFDRALKDALDLLNSKGRISVITFH 242 Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLED++ K F ++ V +IP + P ++ I KK +V + E++ N R+ SA Sbjct: 243 SLEDKICKYTFNDVTKLKDVPPGLPVIPEHLLPK-YKLINKKAIVASDEELEMNHRAHSA 301 Query: 310 KLR 312 KLR Sbjct: 302 KLR 304 >gi|329954177|ref|ZP_08295272.1| S-adenosyl-methyltransferase MraW [Bacteroides clarus YIT 12056] gi|328528154|gb|EGF55134.1| S-adenosyl-methyltransferase MraW [Bacteroides clarus YIT 12056] Length = 305 Score = 168 bits (426), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 106/307 (34%), Positives = 166/307 (54%), Gaps = 16/307 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H+PVLL + +N P +D TFG GG+SR G ++ D+D Q Sbjct: 8 HIPVLLMPSVDGMNIRPDGTYVDVTFGGGGHSREIVSRLGEGGRLLGFDQDE---DAEQN 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + D F+ ++ F L +++ G VD V+ DLGVSS D +RGFSF+ G L Sbjct: 65 IVND--PHFTFVRSNFRYLHNFLRYHGIGQVDAVLADLGVSSHHFDDSERGFSFRFDGAL 122 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +G++A+D+VN + + L I + GE K + ++A IVK R + T + Sbjct: 123 DMRMNKRAGLTAADIVNTYDEERLADIFYLYGELKNSRKLASVIVKARATRKIGTIGEFL 182 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ F + + FQALRI VN E+E L + L +A +ALK GG L+V+++HS Sbjct: 183 DIIKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLYAATEALKPGGRLVVITYHS 240 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK + + + A + + P F+ + KV++P +++ N RSRSAKLR Sbjct: 241 LEDRMVKNIMKTGNIEGKAEKDFFGNVQTP--FRLVNNKVIIPDDDEIERNPRSRSAKLR 298 Query: 313 AGMRTVE 319 + ++ Sbjct: 299 IAEKIIK 305 >gi|152990774|ref|YP_001356496.1| S-adenosyl-methyltransferase MraW [Nitratiruptor sp. SB155-2] gi|262824663|sp|A6Q3T0|RSMH_NITSB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|151422635|dbj|BAF70139.1| S-adenosyl-methyltransferase MraW [Nitratiruptor sp. SB155-2] Length = 302 Score = 168 bits (426), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 108/301 (35%), Positives = 172/301 (57%), Gaps = 17/301 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 H PVLL +V+ G I+DAT G GG+S + K ++ + +D+D A++ ++ Sbjct: 5 HKPVLLNEVLESFKDRKG-TIVDATLGYGGHSEALLKSNPDIKIVGIDQDSEAIAFSKQR 63 Query: 78 MRDYKEQFSLFQATFSQ-LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + Y ++ + Q F+ ++D + V GV+ D+GVSS+Q+D DRGFS S LDMR Sbjct: 64 LASYGDRVQIIQGRFADVIEDILQTHDVQGVLADIGVSSLQLDKKDRGFSIH-SENLDMR 122 Query: 137 MSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M + +SA VVN + ++L RI GE + + ++A AI+ R P Q+ L+ + Sbjct: 123 MDQNAELSAYHVVNTYDEEELKRIFKEYGEIRHSGKLAKAIIHNR---PIQSATQLAEIA 179 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 QK KN R+HPAT FQA+RI VN E+++L L + E+ G + +++FHSLED Sbjct: 180 QKI--LPKNKRVHPATTLFQAIRIEVNKELDQLKGLLDALERHKPKGAKVAIITFHSLED 237 Query: 256 RLVKKFFASRSGKVM----AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 R+VK+ F + + A+R A+ A+ +TKK +V + +++ N R+RSAKL Sbjct: 238 RIVKQHFKEWAKSCICPPEAMR--CTCGANHALGNIVTKKPIVASIDELEENPRARSAKL 295 Query: 312 R 312 R Sbjct: 296 R 296 >gi|291459281|ref|ZP_06598671.1| S-adenosyl-methyltransferase MraW [Oribacterium sp. oral taxon 078 str. F0262] gi|291418535|gb|EFE92254.1| S-adenosyl-methyltransferase MraW [Oribacterium sp. oral taxon 078 str. F0262] Length = 308 Score = 168 bits (426), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 109/299 (36%), Positives = 167/299 (55%), Gaps = 9/299 (3%) Query: 23 VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETMR 79 +LL + I L V +D T G GG++ S C+ S +I +D+D A+ E ++ Sbjct: 1 MLLRETIEGLAIRADGVYVDGTLGGGGHALSICERLSGRGRLIGIDQDGAAIEAASERLK 60 Query: 80 DYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 DY+++ + + + + + + + VDG+ DLGVSS Q+D G+RGFS++ LDMR Sbjct: 61 DYRDRAVIVRGNYEDIAEILMRLQIERVDGICLDLGVSSYQLDEGERGFSYRTDAALDMR 120 Query: 137 MSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M G +A+D+VN + + L RI+ GE+ A IA IV+ R+ +TT +LS +I Sbjct: 121 MDQRGERTAADIVNSYSEEALFRIIRDYGEDHFARNIAKHIVQYREKKRIETTLELSGII 180 Query: 196 QKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 + + HPA RSFQA+RI +N E+E L L L GG L V+SFHSLE Sbjct: 181 SGAIPARVRALSGHPAKRSFQAIRIELNRELEVLENTLDRMIDLLSEGGRLCVISFHSLE 240 Query: 255 DRLVK-KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 DR+VK KF + + + S + +TKK ++P++E++ NRRS+SAKLR Sbjct: 241 DRIVKSKFRTAEKPCICPPDFPVCSCGRKSRGIVLTKKPILPSEEELLENRRSQSAKLR 299 >gi|315638233|ref|ZP_07893415.1| S-adenosyl-methyltransferase MraW [Campylobacter upsaliensis JV21] gi|315481769|gb|EFU72391.1| S-adenosyl-methyltransferase MraW [Campylobacter upsaliensis JV21] Length = 304 Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 105/299 (35%), Positives = 166/299 (55%), Gaps = 8/299 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 H+PVL ++V L + LD T G GG+S + KM N+ IA D+D A+ +E Sbjct: 5 HIPVLPKEVNHLFEKLNEGLFLDCTLGYGGHSENLLKMHPNLHLIACDQDEEALQFSKER 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 ++++ + L+ + FSQ+ + + K + G++ D+GVSS+ +D +RGFS +S LDMRM Sbjct: 65 LKEFDARIRLYHSNFSQILEQIDLKNLRGILADIGVSSLHLDKDERGFSL-RSNFLDMRM 123 Query: 138 SCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 S +SA DV+N + + L I I GE K + +A I+K R + ++L ++ Sbjct: 124 DKSQSLSAFDVINTYSKEKLADIFKIYGELKDGAFLAEKIIKARAKKQIISAKELCEILG 183 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 T KN +I A +FQALRI VN E+E L L+ EKA +L ++ FHSLEDR Sbjct: 184 NTRL--KNRKISQAILAFQALRIEVNKELEVLELFLQKLEKAHLRDCILAIICFHSLEDR 241 Query: 257 LVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 +VK +F + + I A+ + + ++KK + P +E++ N RS AK+RA Sbjct: 242 IVKNYFKKWAKACICDERAIRCECGANHNLGEILSKKPITPDKEEIKANPRSSCAKMRA 300 >gi|242060440|ref|XP_002451509.1| hypothetical protein SORBIDRAFT_04g003030 [Sorghum bicolor] gi|241931340|gb|EES04485.1| hypothetical protein SORBIDRAFT_04g003030 [Sorghum bicolor] Length = 445 Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 121/346 (34%), Positives = 167/346 (48%), Gaps = 54/346 (15%) Query: 20 HVPVLLEKVIALLN-PAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCG- 74 HVPVLL +V+A P P + +D T GA G+S + + + I +D DP A+ G Sbjct: 96 HVPVLLGEVLAAFRRPRPLRSFVDCTLGAAGHSLAMMEAHPELELYIGMDVDPSALEIGR 155 Query: 75 ----------------------QETMRDYK--EQFSLFQATFSQLQD--YVPDKGVDGVV 108 QET+R Y + F + + + V GVDG++ Sbjct: 156 GHIETFLAGREREANGREEDVLQETLRAYTHVKNFKYIKQVLGSVDESLAVGSSGVDGIL 215 Query: 109 FDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEK 167 DLG+SSMQ++ +RGFS + GPLDMRM + A D++N +L RIL GEE Sbjct: 216 IDLGMSSMQVNRSNRGFSVLQDGPLDMRMDPKATLRAEDILNSWPEIELGRILREYGEES 275 Query: 168 QASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS--KNNRIHPATRSFQALRIFVNNEI 225 + IVK R + +T DL LIQ+ S + I ATR FQALRI VN+E+ Sbjct: 276 NWQSVQKQIVKARATGGLHSTGDLVKLIQRMCSISSGRQGWIKTATRVFQALRIAVNDEL 335 Query: 226 EELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF-----------ASRSGKVMAVRH 274 L L S L GG L V+SFHSLEDR+VKK F +A+ Sbjct: 336 RVLEDSLHSCFDCLATGGRLAVISFHSLEDRIVKKTFLELIHGGEADDEEDDKDDLALTD 395 Query: 275 MIPSNAHPAVFQSI--------TKKVVVPTQEDVAFNRRSRSAKLR 312 ++ + P Q + TK+ + P+QE+ N+R RSAKLR Sbjct: 396 IVNED-EPWFGQRVQGRNGTVLTKRPITPSQEEEKLNQRCRSAKLR 440 >gi|298377152|ref|ZP_06987106.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 3_1_19] gi|298266136|gb|EFI07795.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 3_1_19] Length = 305 Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 110/301 (36%), Positives = 168/301 (55%), Gaps = 17/301 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76 HVPV+L + + L+ P + +D TFG GG+S K +GS + D+D A E Sbjct: 9 HVPVMLRESLEGLDIRPDGIYVDVTFGGGGHSCEILKRLGSEGELYGFDQDADA-----E 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +F+ ++ F L +++ G VDG++ DLGVSS D DRGFSF+ G Sbjct: 64 HNIPADPRFTFVRSNFRYLYNFMRYYGESGEVDGLLADLGVSSHHFDDKDRGFSFRFDGA 123 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ +G +A+D+VN + L + + GE K + ++A +VK R++ +T D Sbjct: 124 LDMRMNTRAGQTAADIVNNYTAEALADVFYLYGELKVSRKLASVLVKARETKKIETIGDF 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + K+ + FQALRI VN+E+ L + LRS + L+ GG L+V+++H Sbjct: 184 LEVIKP--FTGKDKEKKFLAQVFQALRIEVNDEMRALKEMLRSTLRVLRPGGRLVVITYH 241 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDRLVK F + + + + + P F+ + KV+VPT E+V N RSRSAKL Sbjct: 242 SLEDRLVKNFLKTGNFEGKCEQDFFGNVRSP--FRLVNNKVIVPTDEEVERNPRSRSAKL 299 Query: 312 R 312 R Sbjct: 300 R 300 >gi|229829369|ref|ZP_04455438.1| hypothetical protein GCWU000342_01458 [Shuttleworthia satelles DSM 14600] gi|229792532|gb|EEP28646.1| hypothetical protein GCWU000342_01458 [Shuttleworthia satelles DSM 14600] Length = 318 Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 105/316 (33%), Positives = 177/316 (56%), Gaps = 14/316 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H V+L + I L + +D T G G+SR S +I +D+D A++ G+E Sbjct: 5 HYSVMLRETIDALAVKSDGIYVDGTMGGAGHSRQIASRLSGRGRLICIDQDADAIAAGKE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++D+ ++ ++ ++ + +++ + + G V+G++ DLGVSS Q+D +RGFS+ G L Sbjct: 65 KLKDFSDRVTIVRSNYERMRQILEELGIASVNGILLDLGVSSYQLDTPERGFSYMDEGAL 124 Query: 134 -DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 DMRM C +A D+VN+ + ++L R++ GE++ A IA IV RQ +T +L Sbjct: 125 LDMRMDCRNPRTARDIVNEYSERELFRMIRNYGEDRFAKNIAKNIVLARQEKTIETVGEL 184 Query: 192 SSLIQKTVYFSKNNRI---HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 + +I+++V + ++ HPA R++QA+RI +N E++ L + L GG V+ Sbjct: 185 NEVIRRSV--PRKIQVTGGHPAKRTYQAIRIELNRELDVLRDHIDEMIDLLADGGRFAVI 242 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 SFHSLEDR+VK F + + + + + IT+K ++P +E++A N RSR Sbjct: 243 SFHSLEDRIVKNAFQTAEDPCICPPEFPVCVCGRKSKGRVITRKPILPGKEELAENHRSR 302 Query: 308 SAKLRAGMRTVERSIE 323 SAKLR R V R E Sbjct: 303 SAKLRVFERRVVREEE 318 >gi|313106950|ref|ZP_07793153.1| putative methyltransferase [Pseudomonas aeruginosa 39016] gi|310879655|gb|EFQ38249.1| putative methyltransferase [Pseudomonas aeruginosa 39016] Length = 247 Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 102/238 (42%), Positives = 150/238 (63%), Gaps = 12/238 (5%) Query: 84 QFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS- 138 +F + Q +F++L D V +G VDGV+ DLGVSS Q+D +RGFSF GPLDMRM+ Sbjct: 7 RFVIVQRSFAELGDEVRARGLEGRVDGVLLDLGVSSPQLDDPERGFSFLNDGPLDMRMNP 66 Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198 GISA++ + A +++ R+ GEE+ A R+A AIV+RRQ PF+ T DL+ +I Sbjct: 67 GQGISAAEFIANAAEEEIARVFKEYGEERFAKRMARAIVQRRQERPFERTADLAEVITVA 126 Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258 + + +PATR+FQ LRI VNNE+ +L +GL +A ++L GG L+V+SFHSLEDR+V Sbjct: 127 NPAWEKGK-NPATRAFQGLRIHVNNELGDLERGLDAALESLAVGGRLVVISFHSLEDRIV 185 Query: 259 KKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVP---TQEDVAFNRRSRSAKLR 312 K F + G+ + +P + VF+ K + P ++E++ N RSRSA +R Sbjct: 186 KLFMRKHAKGEADNLPRDLPIRSK--VFEPRLKLLGKPQYASEEELKANPRSRSAVMR 241 >gi|295109202|emb|CBL23155.1| S-adenosyl-methyltransferase MraW [Ruminococcus obeum A2-162] Length = 314 Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 102/302 (33%), Positives = 169/302 (55%), Gaps = 9/302 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H VLL++ I L+ P + +D T G G++ C+ S I +D+D A+ E Sbjct: 5 HKSVLLDETIEGLSIRPDGIYVDGTLGGAGHASEVCQRLSAKGRFIGIDQDQDAIIAASE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + Y+++ ++ ++ + + + + + G V+G+V DLGVSS Q+D +RGF+++ PL Sbjct: 65 RLAAYEDRVTIIRSNYCYMVNELKNLGIQKVNGIVLDLGVSSYQLDNEERGFTYRVDAPL 124 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM +A+D+VN + K+L RI+ GE+K A IA IV R AP QTT +L+ Sbjct: 125 DMRMDQRQSRTAADIVNGYDEKELYRIIRDYGEDKFAKNIAKHIVAARAKAPIQTTGELT 184 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I++++ + HPA R+FQA+RI +N E++ L + L L GG + +++FH Sbjct: 185 EIIRQSIPMKIQATGGHPAKRTFQAIRIELNRELDVLRESLDGMIDLLDDGGRICIITFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK F + + + IT+K ++P+ ++ N RS+SAK Sbjct: 245 SLEDRIVKTIFRKNENPCTCPPDFPVCVCGKESKGKVITRKPILPSAVEMEENPRSKSAK 304 Query: 311 LR 312 LR Sbjct: 305 LR 306 >gi|325686943|gb|EGD28967.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus sanguinis SK72] Length = 316 Score = 168 bits (425), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 106/309 (34%), Positives = 175/309 (56%), Gaps = 14/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGS--NVIALDRDPFAVSCGQE 76 H+ VLL + + L P + +DAT G G+S ++G ++ A D+D A+ ++ Sbjct: 7 HITVLLHETVDQLAVKPDGIYVDATLGGAGHSEYLLSQLGDEGHLYAFDQDQTAIDNAKK 66 Query: 77 TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y E+ + + F L+ + + GV DG+ +DLGVSS Q+D +RGFS+++ Sbjct: 67 RLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQRERGFSYKQDA 126 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ + ++A DVVN + +DL RI GE+K + +IA I + R P +TT + Sbjct: 127 PLDMRMNREAALTAFDVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQARSIKPIETTTE 186 Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ +I K+ +K + HPA + FQA+RI VN+E+ + ++ A L G + V+ Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDLLAVDGRIAVI 245 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F S V IP P + + +++K ++P++E++ N R+ Sbjct: 246 TFHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKL-ELVSRKPILPSKEELESNNRAH 304 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 305 SAKLRVARK 313 >gi|253580157|ref|ZP_04857424.1| MraW methylase MraW [Ruminococcus sp. 5_1_39B_FAA] gi|251848676|gb|EES76639.1| MraW methylase MraW [Ruminococcus sp. 5_1_39BFAA] Length = 311 Score = 168 bits (425), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 108/307 (35%), Positives = 165/307 (53%), Gaps = 20/307 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H VLLE+ I L+ P + +D T G G++ C+ S I +D+D A+ E Sbjct: 5 HKSVLLEETIEGLDIKPDGIYVDGTLGGAGHAGEVCRKLSAKGRFIGIDQDQDAIIAASE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + YK Q ++ ++ + + + +G VDG++ DLGVSS Q+D +RGF+++ PL Sbjct: 65 RLAPYK-QATIIRSNYCYMVQELAARGIYKVDGILLDLGVSSYQLDNEERGFTYRVDAPL 123 Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM +A D+VN K+L RI+ GE+K A IA IV RQ P TT +L+ Sbjct: 124 DMRMDQRQTQTAGDIVNGYEEKELYRIIRDYGEDKFAKNIAKHIVAARQVKPITTTGELT 183 Query: 193 SLIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I++++ + HPA R+FQA+RI +N E++ L L L GG L +++FH Sbjct: 184 EIIRESIPMKMQVKSGHPAKRTFQAIRIELNRELDVLRDSLDGMIDILDDGGRLCIITFH 243 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF------QSITKKVVVPTQEDVAFNRR 305 SLEDR+VK F PS+ V + IT+K ++P + ++ N R Sbjct: 244 SLEDRIVKTIFRKNENPCTC-----PSDFPVCVCGKKSKGKVITRKPILPGETEMEENPR 298 Query: 306 SRSAKLR 312 S+SAKLR Sbjct: 299 SKSAKLR 305 >gi|78188031|ref|YP_378369.1| methyltransferase [Chlorobium chlorochromatii CaD3] gi|88909192|sp|Q3ANW1|RSMH_CHLCH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|78170230|gb|ABB27326.1| methyltransferase [Chlorobium chlorochromatii CaD3] Length = 328 Score = 168 bits (425), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 112/334 (33%), Positives = 186/334 (55%), Gaps = 30/334 (8%) Query: 12 AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--------GSNVIA 63 A+H T H PVL +V+A L G + +D T G G +S + + S +I Sbjct: 2 ALHDTY--HDPVLAAEVVATLVQRSG-IYVDGTLGGGSHSLALLQALQAQGLLESSLLIG 58 Query: 64 LDRDPFAVSCGQETMRDYKEQFSLFQATF----SQLQDYVPDKG----VDGVVFDLGVSS 115 +D+D A++ E ++ ++ L + F S +Q +G V GV+ DLGVSS Sbjct: 59 IDQDSDALAMAAERLQAWQPYTRLLKGNFRDMASLVQQLCDAEGRACAVTGVLLDLGVSS 118 Query: 116 MQIDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAH 174 Q+D +RGFS+ +SGPLDMRM + ++A++++N A+ +L RI GEE ++ +A Sbjct: 119 FQLDTAERGFSYMRSGPLDMRMDNTAPLTAAELINHADEAELARIFYHYGEEPRSRALAR 178 Query: 175 AIVKRRQS-APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLR 233 A+V++R+ F TT++L++L+++ + + I +R FQALRI VN+E+ L + L Sbjct: 179 AVVQQREKMGNFTTTEELAALVRRLTHGGEKAVIKTLSRLFQALRIAVNDELGALHEVLE 238 Query: 234 SAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSG-----KVMAVRHMIPSNAHPAVFQSI 288 A + L G L V+S+HSLEDR+VK FF + K +A+R + A + Sbjct: 239 GALELLDGNGRLAVMSYHSLEDRVVKHFFTHHAQCDWGPKGVALREPLSQGA----LTIV 294 Query: 289 TKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSI 322 TK+ ++ + +++ N R+RSAKLR + ++I Sbjct: 295 TKRPMLASADEIERNPRARSAKLRVAAKNQPKTI 328 >gi|300309670|ref|YP_003773762.1| S-adenosyl-methionine-dependent methyltransferase MraW protein [Herbaspirillum seropedicae SmR1] gi|300072455|gb|ADJ61854.1| S-adenosyl-methionine-dependent methyltransferase MraW protein [Herbaspirillum seropedicae SmR1] Length = 324 Score = 168 bits (425), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 115/304 (37%), Positives = 179/304 (58%), Gaps = 16/304 (5%) Query: 20 HVPVLLEKVI---ALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSC 73 H VLLE+ + A+ V LD TFG GG+SR+ ++G +IA D+DP A++ Sbjct: 11 HRTVLLEEAVDALAIEGERANGVYLDGTFGRGGHSRAILSRLGPQGRLIAFDKDPLAIAT 70 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 Q+ +F + +F+ + + ++G VDGV+ DLG+SS Q+D RGFSF+ Sbjct: 71 AQKI---ADPRFEIVHDSFATMDQALAERGIARVDGVLMDLGISSPQVDDAARGFSFRLD 127 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 GPLDMRM + G+SA++ + A+ + + +++ GEE+ A +IA IV R P +T+ Sbjct: 128 GPLDMRMDTTRGVSAAEWLATADEQQIAKVIRDYGEERFALQIAKKIVAGRAVEPISSTR 187 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L++L+ + V + + PATR+FQA+RIFVN E+EEL GL A + G L+V+S Sbjct: 188 QLAALVAQAVKTREKGK-DPATRTFQAVRIFVNQELEELEVGLEKAFAQMAQHGRLVVIS 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK+F AS++ R + I + P + + V+P+ +V N R+RS Sbjct: 247 FHSLEDRIVKQFMASKAHAPQPDRRLPIRAVDLPQAPARLLPR-VMPSAGEVEANPRARS 305 Query: 309 AKLR 312 A +R Sbjct: 306 AVMR 309 >gi|42559426|sp|P60397|RSMH_ONYPE RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 304 Score = 168 bits (425), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 105/306 (34%), Positives = 166/306 (54%), Gaps = 16/306 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76 +H+ VL ++ I L P + +DAT G G++ + + + D+D A + ++ Sbjct: 7 NHISVLKQEAIDFLKIKPEGIYVDATLGQCGHTIEIANLLQQGFLYSFDQDVEACTNAKK 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + + + FS L+ + + V DG++FDLG+SS QID RGFS+ + PL Sbjct: 67 ILPPHLP-IEIIHSNFSHLKTQLAQRNVFQLDGILFDLGLSSCQIDNPQRGFSYLHNTPL 125 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ + I+A ++N + L I + GE K A+ +A I+K+R P T+ DL Sbjct: 126 DMRMNVNQTITAQYILNNYSFAQLKNIFKVYGEVKNAALVASEIIKQR---PLCTSYDLV 182 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++ + F + H A + FQALRI VN E+E L Q L + LK +++V+SFHS Sbjct: 183 AITDR---FCNRQKGHSAKKIFQALRIEVNQELESLKQALEQSLDLLKPNAMIVVISFHS 239 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-FQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK FF S V+ + +P P ITKK +P++E++ N RS SAKL Sbjct: 240 LEDRIVKHFFKKNSTFVLPKK--MPITIMPQTPLSIITKKAFLPSEEEMQNNSRSISAKL 297 Query: 312 RAGMRT 317 R ++ Sbjct: 298 RVAVKN 303 >gi|39939221|ref|NP_950987.1| hypothetical protein PAM_735 [Onion yellows phytoplasma OY-M] gi|39722330|dbj|BAD04820.1| conserved hypothetical protein [Onion yellows phytoplasma OY-M] Length = 342 Score = 168 bits (425), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 106/313 (33%), Positives = 170/313 (54%), Gaps = 16/313 (5%) Query: 12 AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPF 69 +++ T +H+ VL ++ I L P + +DAT G G++ + + + D+D Sbjct: 38 SMNKTHFNHISVLKQEAIDFLKIKPEGIYVDATLGQCGHTIEIANLLQQGFLYSFDQDVE 97 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFS 126 A + ++ + + + + FS L+ + + V DG++FDLG+SS QID RGFS Sbjct: 98 ACTNAKKILPPHLP-IEIIHSNFSHLKTQLAQRNVFQLDGILFDLGLSSCQIDNPQRGFS 156 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 + + PLDMRM+ + I+A ++N + L I + GE K A+ +A I+K+R P Sbjct: 157 YLHNTPLDMRMNVNQTITAQYILNNYSFAQLKNIFKVYGEVKNAALVASEIIKQR---PL 213 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 T+ DL ++ + F + H A + FQALRI VN E+E L Q L + LK ++ Sbjct: 214 CTSYDLVAITDR---FCNRQKGHSAKKIFQALRIEVNQELESLKQALEQSLDLLKPNAMI 270 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-FQSITKKVVVPTQEDVAFNR 304 +V+SFHSLEDR+VK FF S V+ + +P P ITKK +P++E++ N Sbjct: 271 VVISFHSLEDRIVKHFFKKNSTFVLPKK--MPITIMPQTPLSIITKKAFLPSEEEMQNNS 328 Query: 305 RSRSAKLRAGMRT 317 RS SAKLR ++ Sbjct: 329 RSISAKLRVAVKN 341 >gi|78778559|ref|YP_396671.1| methyltransferase [Prochlorococcus marinus str. MIT 9312] gi|123554751|sp|Q31D10|RSMH_PROM9 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|78712058|gb|ABB49235.1| methyltransferase [Prochlorococcus marinus str. MIT 9312] Length = 300 Score = 168 bits (425), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 110/312 (35%), Positives = 170/312 (54%), Gaps = 42/312 (13%) Query: 19 DHVPVLLEKVIALLNPAPGKVI-------LDATFGAGGYSRSFCKMGSN--VIALDRDPF 69 +H V+ ++++A L P +I +DAT G GG+S + S+ +I LD+DPF Sbjct: 12 NHKSVMTDEILASLEHYP--LIHNNQLKGIDATLGGGGHSYHLLRKYSDLHIIGLDQDPF 69 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 A + + ++K + + A F+ D+ P + V V+ DLGV+S QID RGFSFQK Sbjct: 70 ARKSASKKLDEFKNRIDIRAANFA---DFEPKEKVSFVIADLGVNSNQIDDPKRGFSFQK 126 Query: 130 SGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI-VKRRQSAPFQT 187 GPLDMRM+ + A ++ KDL ++ G+E+ + +IA I + + + + Sbjct: 127 DGPLDMRMNPFLEVDAEKLIETLQEKDLANLIYKYGDERLSRKIARKIKMDLKVNGKYSG 186 Query: 188 TQDLSSLIQ-----KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 T++L+ I K Y +IHPATR+FQALRI VN EIE L + L+ L G Sbjct: 187 TKELAYSIAGCFPPKQRY----KKIHPATRTFQALRIAVNKEIEVLEKFLQIVPDWLLPG 242 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G++ ++SFHSLEDRLVK F + +++TKK + P++++V Sbjct: 243 GIISIISFHSLEDRLVKSSFKNDQR-----------------LKNLTKKPITPSEQEVEI 285 Query: 303 NRRSRSAKLRAG 314 N+R+RS KLR Sbjct: 286 NKRARSGKLRVA 297 >gi|323440951|gb|EGA98658.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus O11] gi|323442268|gb|EGA99898.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus O46] Length = 304 Score = 168 bits (425), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 101/301 (33%), Positives = 162/301 (53%), Gaps = 11/301 (3%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETMRD 80 +L + I LN V +D T G G++ ++ +IA+D+D A+ +E ++D Sbjct: 1 MLNETIDYLNVKENGVYIDCTLGGAGHALYLLNQLNDDGRLIAIDQDQTAIDNAKEVLKD 60 Query: 81 YKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 + + + + F +L + D + VDG+ +DLGVSS Q+D +RGFS+ LDMRM Sbjct: 61 HLHKVTFVHSNFRELTQILKDLNIEKVDGIYYDLGVSSPQLDIPERGFSYHHDATLDMRM 120 Query: 138 S-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 ++A ++VN + + L +I GEEK + +IA I R+ P TT +L +I+ Sbjct: 121 DQTQELTAYEIVNNWSYEALVKIFYRYGEEKFSKQIARRIEAHREQQPITTTLELVDIIK 180 Query: 197 KTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + + ++ HPA R FQALRI VN+E+ + A + +K GG + V++FHSLED Sbjct: 181 EGIPAKARRKGGHPAKRVFQALRIAVNDELSAFEDSIEQAIELVKVGGRISVITFHSLED 240 Query: 256 RLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 RL K+ F R + IP P + + + +K + T+ED+ N R+RSAKLR Sbjct: 241 RLCKQVFQEYEKGPEVPRGLPVIPEAYTPKL-KRVNRKPITATEEDLDDNNRARSAKLRV 299 Query: 314 G 314 Sbjct: 300 A 300 >gi|255320234|ref|ZP_05361419.1| S-adenosyl-methyltransferase MraW [Acinetobacter radioresistens SK82] gi|262380450|ref|ZP_06073604.1| MraW methylase [Acinetobacter radioresistens SH164] gi|255302673|gb|EET81905.1| S-adenosyl-methyltransferase MraW [Acinetobacter radioresistens SK82] gi|262297896|gb|EEY85811.1| MraW methylase [Acinetobacter radioresistens SH164] Length = 303 Score = 168 bits (425), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 115/310 (37%), Positives = 166/310 (53%), Gaps = 24/310 (7%) Query: 20 HVPVLL-EKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPFAVSCGQ 75 H+ VLL E V A+L + +DATFG GG+SR + V A D+DP A++ Sbjct: 3 HISVLLHETVAAVLAERNTGIYVDATFGRGGHSRELLAQLNTDAQVYAFDKDPQALAVAA 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + +F + A+F+ L+ + G VDG++ DLGVSS Q+D +RGFSF + GP Sbjct: 63 E-LEQQDARFKIIHASFADLKQELEKIGITEVDGIMADLGVSSPQLDQAERGFSFMQDGP 121 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G +A++ + + L I+ GEE+ + R+A AI +Q+ TT L Sbjct: 122 LDMRMDNSQGQTAAEWLVNIEEEALANIIYQYGEERYSRRLARAI---KQAGYIATTGQL 178 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + L+ K + HPATR+FQA+RI +N E+E++ L A LK G L V+SFH Sbjct: 179 AELV-KAAHPKWEKHKHPATRTFQAIRIAINKELEDIELFLPQAVDILKPHGRLAVISFH 237 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV-----VVPTQEDVAFNRRS 306 SLEDRL+K+F S +P Q T+++ + + +V N RS Sbjct: 238 SLEDRLIKQFIQKESSLAEDSGWGMPQ------IQQDTRRLKKISRIKASDAEVKENPRS 291 Query: 307 RSAKLRAGMR 316 RSA LR R Sbjct: 292 RSAWLRVAER 301 >gi|262377037|ref|ZP_06070263.1| MraW methylase [Acinetobacter lwoffii SH145] gi|262308075|gb|EEY89212.1| MraW methylase [Acinetobacter lwoffii SH145] Length = 303 Score = 168 bits (425), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 118/310 (38%), Positives = 168/310 (54%), Gaps = 24/310 (7%) Query: 20 HVPVLLEKVI-ALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQ 75 H+ VLL + I ALL +D TFG GG++R K+ N V A D+DP A++ Sbjct: 3 HISVLLHETIDALLAGRNTGTYVDGTFGRGGHTRLLLSKLDENARVYAFDKDPQALAVAA 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + +F + A+F+ L+D + + G VDGV+ DLGVSS Q+D +RGFSF K GP Sbjct: 63 E-LEQEDSRFKIIHASFADLKDALAELGIEHVDGVMADLGVSSPQLDQAERGFSFMKDGP 121 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G +A++ + Q + L I+ GEE+ + RIA AI + + TT L Sbjct: 122 LDMRMDNSQGPTAAEWLTQIEEEALANIIFKYGEERYSRRIAKAI---KAAGYIDTTAKL 178 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ K + H ATR+FQA+RI +N E+E++ L A + LK L V+SFH Sbjct: 179 AEIV-KVAHPKWEKNKHAATRTFQAIRIAINKELEDIEIFLPQAVEILKPEARLAVISFH 237 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV-----VVPTQEDVAFNRRS 306 SLEDRL+K+F S +P Q T+++ V + E+V N RS Sbjct: 238 SLEDRLIKQFIQKESTLEEDSGWGMPQQ------QKDTRRLKKVSRVKASDEEVKANPRS 291 Query: 307 RSAKLRAGMR 316 RSA LR R Sbjct: 292 RSAWLRVAER 301 >gi|323350327|ref|ZP_08085992.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus sanguinis VMC66] gi|322123512|gb|EFX95183.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus sanguinis VMC66] Length = 316 Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 105/309 (33%), Positives = 175/309 (56%), Gaps = 14/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGS--NVIALDRDPFAVSCGQE 76 H+ VLL + + L P + +DAT G G+S ++G ++ A D+D A+ ++ Sbjct: 7 HITVLLHETVDQLAVKPDGIYVDATLGGAGHSEYLLSQLGDEGHLYAFDQDQMAIDNAKK 66 Query: 77 TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y E+ + + F L+ + + GV DG+ +DLGVSS Q+D +RGFS+++ Sbjct: 67 RLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQRERGFSYKQDA 126 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ + ++A +VVN + +DL RI GE+K + +IA I + R P +TT + Sbjct: 127 PLDMRMNREAALTAFEVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQARSVKPIETTTE 186 Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ +I K+ +K + HPA + FQA+RI VN+E+ + ++ A L G + V+ Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDLLAVDGRIAVI 245 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F S V IP P + + +++K ++P++E++ N R+ Sbjct: 246 TFHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKL-ELVSRKPILPSKEELESNNRAH 304 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 305 SAKLRVARK 313 >gi|218281029|ref|ZP_03487608.1| hypothetical protein EUBIFOR_00167 [Eubacterium biforme DSM 3989] gi|218217710|gb|EEC91248.1| hypothetical protein EUBIFOR_00167 [Eubacterium biforme DSM 3989] Length = 308 Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 106/302 (35%), Positives = 161/302 (53%), Gaps = 7/302 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQE 76 +H+ VLL + I +L + +D T G GG+S K ++ A D D A+ Sbjct: 2 EHISVLLNESIDMLQIKEDGIYVDCTLGRGGHSSEILKRLTSGHLYAFDCDQNAIDESMP 61 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ +QF+L + F L+ + +GV DG+ DLGVSS Q D RGFS++ L Sbjct: 62 RLKAIGDQFTLIHSPFENLKSELAKRGVNFVDGIFMDLGVSSPQFDDAQRGFSYRWDARL 121 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S + A VVN + +DL RIL GEE A +IA I K R+ AP +TT +L Sbjct: 122 DMRMDQSQELDAYVVVNTYDKEDLIRILKRYGEEPFAQKIADKICKAREIAPIETTFELV 181 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + + + HPA ++FQA+RI VN+E+E+L L L G + V++FH Sbjct: 182 DVIKSALPAAVLRKKGHPAKQTFQAIRIEVNHELEQLETVLHDGLTMLNPHGRMAVITFH 241 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+VK+ F + + + +Q + +K V+ + E++ N R+ SAKL Sbjct: 242 SLEDRIVKEIFKEVAVAKKVNKRLPQVGTENLEYQLVNRKPVLASSEELEMNNRAHSAKL 301 Query: 312 RA 313 R Sbjct: 302 RG 303 >gi|227488521|ref|ZP_03918837.1| S-adenosyl-methyltransferase MraW [Corynebacterium glucuronolyticum ATCC 51867] gi|227091415|gb|EEI26727.1| S-adenosyl-methyltransferase MraW [Corynebacterium glucuronolyticum ATCC 51867] Length = 354 Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 107/321 (33%), Positives = 172/321 (53%), Gaps = 24/321 (7%) Query: 20 HVPVLLEKVIALL------NPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAV 71 HVPVL ++++ LL + A G +++D T GAGG++ N VI +DRD A+ Sbjct: 31 HVPVLRDRMVELLRRGIAVDGATG-IVVDGTLGAGGHTEHLLATDPNARVIGVDRDAQAL 89 Query: 72 SCGQETMRDYKEQFSLFQATFSQL------------QDYVPDKGVDGVVFDLGVSSMQID 119 + + ++F F + Q+ D G+ G +FDLGVSSMQ+D Sbjct: 90 KDATARLAPFGDRFVGLNVRFDEWMEAASCSSHPLCQEAAAD-GISGALFDLGVSSMQLD 148 Query: 120 CGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178 +RGF+++ PLDMRM S GI+A+DV+N + DL R+L GEEK A +IA A+++ Sbjct: 149 QEERGFAYKIDAPLDMRMDPSRGITAADVLNTYSHGDLARVLKTYGEEKFAGKIASAVIR 208 Query: 179 RRQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 R+ PF + L L+ T+ ++ + HPA R+FQALR+ VN E+ L Q + Sbjct: 209 EREKEPFTRSGRLVELLYDTIPAPARRHGGHPAKRTFQALRVEVNQELRALEQVIPVTAD 268 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297 AL GG+++ +S+ SLED++VKK A + + F +T+ ++ Sbjct: 269 ALHVGGVMVFMSYQSLEDKIVKKALAKLTTSTNPPGLPVDLPGTEPHFALVTRGSEKASK 328 Query: 298 EDVAFNRRSRSAKLRAGMRTV 318 +++ N R+ S ++RA R + Sbjct: 329 KEIDQNPRAASVRVRAAQRVL 349 >gi|289766581|ref|ZP_06525959.1| methyltransferase [Fusobacterium sp. D11] gi|289718136|gb|EFD82148.1| methyltransferase [Fusobacterium sp. D11] Length = 314 Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 109/313 (34%), Positives = 176/313 (56%), Gaps = 20/313 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+PVL + + L P + +D T G G +S + S+ +I++D+D A+ ++ Sbjct: 9 HIPVLYYETLDNLVINPDGIYIDCTLGGGSHSEGILERLSDKGLLISIDQDINAIEYSKK 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + ++ +F+ F + GVD G++ D+GVSS Q+D +RGFS++ L Sbjct: 69 RLEKFGSKWKVFKGNFENIDTIAYMAGVDKVDGILMDIGVSSKQLDDPERGFSYRYDVKL 128 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ ISA DVVN + + L++I+ GEE+ A +IA I++ R+S+P + T DL Sbjct: 129 DMRMNTEQKISAYDVVNTYSEEQLSKIIFEYGEERHARKIAKLILEERKSSPIEKTSDLI 188 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +LI++ + + HPA ++FQA+RI VN E+E L + A + LK GG L +++FHS Sbjct: 189 TLIKRA--YPERASKHPAKKTFQAIRIEVNRELEVLENAISKAAELLKVGGRLAIITFHS 246 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV------FQSITKKVVVPTQEDVAFNRRS 306 LEDR+VK F K +A P + V F+ ITKK ++P ++ N RS Sbjct: 247 LEDRIVKNKF-----KDLATACKCPKDIPICVCGGVKKFEIITKKPIIPIDNELKNNNRS 301 Query: 307 RSAKLRAGMRTVE 319 S+KLR R ++ Sbjct: 302 HSSKLRILERILD 314 >gi|212551099|ref|YP_002309416.1| S-adenosyl-methyltransferase MraW [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|226709918|sp|B6YS33|RSMH_AZOPC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|212549337|dbj|BAG84005.1| S-adenosyl-methyltransferase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 304 Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 110/309 (35%), Positives = 175/309 (56%), Gaps = 20/309 (6%) Query: 11 SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGS--NVIALDRD 67 ++++H H+PVLL++ + LN G + +D TFG GG+S+ ++G+ ++ D+D Sbjct: 4 TSVYH----HIPVLLKESVDGLNVCSGGIYVDVTFGGGGHSKEILVRLGNTGHLYGFDQD 59 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQL---QDYVPDKGVDGVVFDLGVSSMQIDCGDRG 124 + D + F+ ++ F L D+ K +DG++ DLGVSS+ D +RG Sbjct: 60 E---DSEKNIFSDIR--FTFVRSNFRYLAHFMDWHNVKEIDGLLADLGVSSIHFDDCNRG 114 Query: 125 FSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 FSF+ G LDMRM+ G +A+D++N + L + + GE K ++ IAHAIV+ R Sbjct: 115 FSFRFIGNLDMRMNQRKGETAADILNTYSENKLIDMFDLYGELKNSASIAHAIVQARMQR 174 Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 QT QD +++ V K + + FQALRI VN E++ L + L A++ L++GG Sbjct: 175 EIQTVQDFLDILKPFVRKGKVEK--QLAQIFQALRIEVNKELDALKEMLIQAKQLLRSGG 232 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 + ++++HSLEDRLVK FF + S R + P F+ I +V+V + E+V N Sbjct: 233 RIAIITYHSLEDRLVKFFFKTGSFYEKIERDFYGNFLSP--FKIINHRVIVASDEEVKRN 290 Query: 304 RRSRSAKLR 312 RSRSAKLR Sbjct: 291 PRSRSAKLR 299 >gi|319892166|ref|YP_004149041.1| rRNA small subunit methyltransferase H [Staphylococcus pseudintermedius HKU10-03] gi|317161862|gb|ADV05405.1| rRNA small subunit methyltransferase H [Staphylococcus pseudintermedius HKU10-03] gi|323464735|gb|ADX76888.1| S-adenosyl-methyltransferase MraW [Staphylococcus pseudintermedius ED99] Length = 311 Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 105/304 (34%), Positives = 164/304 (53%), Gaps = 9/304 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+ VLL++ + LN V +D T G G+S+ S+ +IA+D+D A++ +E Sbjct: 4 HISVLLKETVDQLNIKEDGVYVDCTLGGAGHSQYLLNQLSDEGRLIAIDQDMTAINHAKE 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ + + F L + + + VDG+++DLGVSS Q+D +RGFS+Q + L Sbjct: 64 KLQQDLHKVTFVHNNFRNLANILAELNIDKVDGILYDLGVSSPQLDVPERGFSYQHNAKL 123 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM +SA +VVN + + L +I GEEK + +IA I RRQ P +TT DL Sbjct: 124 DMRMDQTQPLSAYEVVNTWSYETLVKIFFRYGEEKFSKQIARKIEARRQQQPIETTFDLV 183 Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + I++ + ++ HPA R FQA+RI VN+E+ L A +K G + V++FH Sbjct: 184 ACIKEGIPAKARRKGGHPAKRVFQAIRIAVNDELAAFEDSLEQAIDHVKVNGRISVITFH 243 Query: 252 SLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDRL K+ F R + + A+ + + +K +V D+ N R+RSAK Sbjct: 244 SLEDRLCKQMFQEYEKGPDVPRGLPVLPEAYTPKLKRVNRKPIVADATDLEDNHRARSAK 303 Query: 311 LRAG 314 LR Sbjct: 304 LRVA 307 >gi|315147940|gb|EFT91956.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX4244] Length = 322 Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 107/316 (33%), Positives = 171/316 (54%), Gaps = 19/316 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VLL++ + L P V +D T G G+S ++ A D+D A++ + Sbjct: 11 HYTVLLKETVDGLQVKPDGVYVDCTLGGAGHSEYLLTQLNEHGHLYAFDQDQKALAHAKT 70 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++ Y K Q + ++ F +++ + + GV DG+++DLGVSS Q+D +RGFS+ + Sbjct: 71 RLQKYVDKGQVTFIKSNFRNIKEELAEHGVFHVDGILYDLGVSSPQLDEAERGFSYHQDA 130 Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM ++A +VVN + +L +I GEEK + +I I + R+ P +TT + Sbjct: 131 PLDMRMDQDAPLTAREVVNTYSYSELVKIFFRYGEEKFSKQITREIERVREKQPIETTGE 190 Query: 191 LSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I+ + ++ HPA R FQA+RI VN+E+ + + L A L G + V++ Sbjct: 191 LVEIIKTAIPAPARRKGGHPAKRIFQAIRIAVNDELGAVEESLEQAIDLLAKNGRISVIT 250 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPS-NAHPAVFQS----ITKKVVVPTQEDVAFNR 304 FHSLEDR+VK F S V+ + P P FQ IT+K ++P+ +++ N Sbjct: 251 FHSLEDRIVKTMFKEYS----TVQDLPPGIPVVPEEFQPELKVITRKPILPSDSELSENN 306 Query: 305 RSRSAKLRAGMRTVER 320 RSRSAKLR + R Sbjct: 307 RSRSAKLRIAEKIKSR 322 >gi|298480587|ref|ZP_06998784.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. D22] gi|298273408|gb|EFI14972.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. D22] Length = 304 Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 107/300 (35%), Positives = 163/300 (54%), Gaps = 16/300 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HVPVLL++ + +N PG +D TFG G+SR G ++ D+D + Sbjct: 9 HVPVLLKESVDGMNIQPGGTYVDVTFGGAGHSREILSRLGEGGRLLGFDQDE---DAERN 65 Query: 77 TMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + D F ++ F LQ+ Y + VD ++ DLGVSS D +RGFSF+ G L Sbjct: 66 IVND--PHFIFVRSNFRYLQNFLRYHDIEQVDAILADLGVSSHHFDDSERGFSFRFDGAL 123 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +GI+A+D+VN + L + + GE K + ++A IVK R +T + Sbjct: 124 DMRMNKRAGITAADIVNTYEEERLANLFYLYGELKNSRKLASVIVKARSGQNIRTIGEFL 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ F + + FQALRI VN E+E L + L++A +ALK GG L+V+++HS Sbjct: 184 EIIKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLQAATEALKPGGRLVVITYHS 241 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK + + + A + P F+ + KV+VP + ++ N RSRSAKLR Sbjct: 242 LEDRMVKNIMKTGNVEGKAESDFFGNLQTP--FRLVNNKVIVPDEAEIERNPRSRSAKLR 299 >gi|170016882|ref|YP_001727801.1| S-adenosyl-methyltransferase MraW [Leuconostoc citreum KM20] gi|263456317|sp|B1MXV5|RSMH_LEUCK RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|169803739|gb|ACA82357.1| S-adenosyl-methyltransferase MraW [Leuconostoc citreum KM20] Length = 313 Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 105/306 (34%), Positives = 165/306 (53%), Gaps = 12/306 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76 +HV VLL + +ALL P +DAT G GG++ K + + D+D A+ Q Sbjct: 5 EHVTVLLHEAVALLAINPTGTYVDATLGGGGHTGEILKQLTTGKLYSFDQDDTAIKYNQT 64 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 D + L F QL+ + ++ VDG+V+DLGVSS+Q D G RGFS+ Sbjct: 65 RYADEIAAGKLILIHQNFRQLKVALAEQHVTAVDGIVYDLGVSSVQFDDGQRGFSYNYDA 124 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM ++A +VN D+ R+L GE++ ++A I + R P TT + Sbjct: 125 ELDMRMDQRQTLTAKTIVNDWPFNDILRVLSRYGEDRFPKQVARKIEQHRDKGPINTTFE 184 Query: 191 LSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I++ + ++ HPA R+FQALR+ VN+E+ L L A + L G + V++ Sbjct: 185 LVDIIKEAIPAPARRKGGHPAKRTFQALRVAVNDELGALEDSLTQALELLAPSGRISVIT 244 Query: 250 FHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 F SLEDRLVK+ F ++ + A ++P P ++ +T+K ++P++ ++ N RS Sbjct: 245 FQSLEDRLVKQMFREKTSMPDLPAGLPVLPGQFEPD-YKLLTRKPILPSETEMTDNHRSE 303 Query: 308 SAKLRA 313 SAKLR Sbjct: 304 SAKLRG 309 >gi|126654823|ref|ZP_01726357.1| S-adenosyl-methyltransferase MraW [Cyanothece sp. CCY0110] gi|126623558|gb|EAZ94262.1| S-adenosyl-methyltransferase MraW [Cyanothece sp. CCY0110] Length = 304 Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 115/305 (37%), Positives = 167/305 (54%), Gaps = 29/305 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 H PVL ++VI L P LDAT G GG+SR + +V +D D A++ Q+ Sbjct: 16 HTPVLCQEVIEGLAIEPNGHYLDATLGRGGHSRLILEAFPDVRVTGIDLDGEAIATTQDN 75 Query: 78 MRDYKE-QFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + + E +F ++Q F+ DY + +G++ DLGVSS Q D +RGFSF+ LDM Sbjct: 76 LSEIAENRFQVWQGNFA---DYPGETAQFNGILADLGVSSPQFDVPERGFSFRHEAVLDM 132 Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM+ ++A++++N + L + GEE+++ IA IV++R PF+TT +L+ Sbjct: 133 RMNREQSLTAAEIINHWDQTSLADLFYQYGEERRSRPIARRIVQQR---PFETTTELAEA 189 Query: 195 IQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 I K + RIHPATR FQALRI VN+E+ L + L A LK GG + ++SFHSL Sbjct: 190 IAKCFPPKQRYGRIHPATRVFQALRIAVNDELGSLERFLEKAPHWLKPGGRIGIISFHSL 249 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 EDR VK F R ++ V +TKK ++ E+ N RSRSAKLR Sbjct: 250 EDRRVKYSF--RDSLLLDV---------------VTKKPMIAQPEEREKNPRSRSAKLRF 292 Query: 314 GMRTV 318 R + Sbjct: 293 AQRKL 297 >gi|67925208|ref|ZP_00518575.1| methyltransferase [Crocosphaera watsonii WH 8501] gi|67852944|gb|EAM48336.1| methyltransferase [Crocosphaera watsonii WH 8501] Length = 292 Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 115/305 (37%), Positives = 166/305 (54%), Gaps = 33/305 (10%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 H PVL + ++ L P LDAT G GG+SR +V +D D A++ Q Sbjct: 8 HTPVLPQALLDGLAIDPNGHYLDATLGRGGHSRLILATFPDVRVTGIDLDDEAIATTQGN 67 Query: 78 MRD-YKEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + + + ++ ++Q F+ DY G +G++ DLGVSS Q D +RGFSF+ PLDM Sbjct: 68 LSELFGDRLQVWQGNFA---DYSGKIGEFNGIIADLGVSSPQFDVAERGFSFRHQAPLDM 124 Query: 136 RMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM+ ++A++++N + L + GEE+++ IA IV++R PF+TT L+ Sbjct: 125 RMNRQQSLTAAEIINHWDQTSLADLFYQYGEERRSRVIARRIVQQR---PFETTTALAEA 181 Query: 195 IQKTVYF---SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 I + F + RIHPATR FQALRI VN+E+ L + L A LK GG + ++SFH Sbjct: 182 I--ALCFPPKQRYGRIHPATRVFQALRIAVNDELGSLERFLEKAPHWLKPGGRIGIISFH 239 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR VK F R ++ V +TKK ++P E+ A N RSRSAKL Sbjct: 240 SLEDRRVKYSF--RDSLLLDV---------------VTKKPIIPQAEEQANNPRSRSAKL 282 Query: 312 RAGMR 316 R R Sbjct: 283 RFAQR 287 >gi|328945057|gb|EGG39213.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus sanguinis SK1087] Length = 316 Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 105/309 (33%), Positives = 175/309 (56%), Gaps = 14/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGS--NVIALDRDPFAVSCGQE 76 H+ VLL + + L P + +DAT G G+S ++G ++ A D+D A+ ++ Sbjct: 7 HITVLLHETVDQLAVKPDGIYVDATLGGAGHSEYLLSQLGDEGHLYAFDQDQMAIDNAKK 66 Query: 77 TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y E+ + + F L+ + + GV DG+ +DLGVSS Q+D +RGFS+++ Sbjct: 67 RLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQRERGFSYKQDA 126 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ + ++A +VVN + +DL RI GE+K + +IA I + R P +TT + Sbjct: 127 PLDMRMNREAALTAFEVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQARSVKPIETTTE 186 Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ +I K+ +K + HPA + FQA+RI VN+E+ + ++ A L G + V+ Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDLLAVDGRIAVI 245 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F S V IP P + + +++K ++P++E++ N R+ Sbjct: 246 TFHSLEDRLTKQLFKDASTVDVPKGLPFIPDELQPKL-ELVSRKPILPSKEELESNNRAH 304 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 305 SAKLRVARK 313 >gi|325695197|gb|EGD37098.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus sanguinis SK150] Length = 316 Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 107/309 (34%), Positives = 174/309 (56%), Gaps = 14/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGS--NVIALDRDPFAVSCGQE 76 H+ VLL + + L P + +DAT G G+S ++G ++ A D+D A+ ++ Sbjct: 7 HITVLLHETVDQLAVKPDGIYVDATLGGAGHSEYLLSQLGDEGHLYAFDQDQTAIDNAKK 66 Query: 77 TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y E+ + + F L+ + + GV DG+ +DLGVSS Q+D +RGFS+++ Sbjct: 67 RLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQRERGFSYKQDA 126 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ + ++A DVVN + +DL RI GE+K + +IA I + R +TT + Sbjct: 127 PLDMRMNREAALTAFDVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQARSIKLIETTTE 186 Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ +I K+ +K + HPA + FQA+RI VNNE+ + ++ A L G + V+ Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNNELGAADESIQQAIDLLAVDGRIAVI 245 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F S V IP P + + +++K ++P+QE++ N R+ Sbjct: 246 TFHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKL-ELVSRKPILPSQEELESNNRAH 304 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 305 SAKLRVARK 313 >gi|82750786|ref|YP_416527.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus RF122] gi|123549021|sp|Q2YXE3|RSMH_STAAB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|82656317|emb|CAI80731.1| S-adenosyl-methyltransferase [Staphylococcus aureus RF122] Length = 311 Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 103/306 (33%), Positives = 165/306 (53%), Gaps = 13/306 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+ V+L + I LN V +D T G G++ ++ +IA+D+D A+ ++ Sbjct: 4 HISVMLNETIDYLNVKENGVYIDCTLGGAGHALYLLNQLNDDGRLIAIDQDQTAIDNAKK 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++++ + + + F +L + D + VDG+ +DLGVSS Q+D +RGFS+ L Sbjct: 64 VLKEHLHKVTFVHSNFRELTQILKDLNIEKVDGIYYDLGVSSPQLDIPERGFSYHHDATL 123 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM ++A ++VN + + L +I GEEK + +IA I R+ P TT +L Sbjct: 124 DMRMDQTQELTAYEIVNNWSYEALVKIFYRYGEEKFSKQIARRIEAHREQQPITTTLELV 183 Query: 193 SLIQKTVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I++ + +K R HPA R FQALRI VN+E+ + A + +K G + V++F Sbjct: 184 DIIKEGIP-AKARRKGGHPAKRVFQALRIAVNDELSAFEDSIEQAIELVKVDGRISVITF 242 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 HSLEDRL K+ F R + IP P + + I +K + T+ED+ N R+RS Sbjct: 243 HSLEDRLCKQVFQEYEKGPEVPRGLPVIPEAYTPKL-KRINRKPITATEEDLDDNNRARS 301 Query: 309 AKLRAG 314 AKLR Sbjct: 302 AKLRVA 307 >gi|256028668|ref|ZP_05442502.1| methyltransferase [Fusobacterium sp. D11] Length = 331 Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 109/313 (34%), Positives = 176/313 (56%), Gaps = 20/313 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+PVL + + L P + +D T G G +S + S+ +I++D+D A+ ++ Sbjct: 26 HIPVLYYETLDNLVINPDGIYIDCTLGGGSHSEGILERLSDKGLLISIDQDINAIEYSKK 85 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + ++ +F+ F + GVD G++ D+GVSS Q+D +RGFS++ L Sbjct: 86 RLEKFGSKWKVFKGNFENIDTIAYMAGVDKVDGILMDIGVSSKQLDDPERGFSYRYDVKL 145 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ ISA DVVN + + L++I+ GEE+ A +IA I++ R+S+P + T DL Sbjct: 146 DMRMNTEQKISAYDVVNTYSEEQLSKIIFEYGEERHARKIAKLILEERKSSPIEKTSDLI 205 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +LI++ + + HPA ++FQA+RI VN E+E L + A + LK GG L +++FHS Sbjct: 206 TLIKRA--YPERASKHPAKKTFQAIRIEVNRELEVLENAISKAAELLKVGGRLAIITFHS 263 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV------FQSITKKVVVPTQEDVAFNRRS 306 LEDR+VK F K +A P + V F+ ITKK ++P ++ N RS Sbjct: 264 LEDRIVKNKF-----KDLATACKCPKDIPICVCGGVKKFEIITKKPIIPIDNELKNNNRS 318 Query: 307 RSAKLRAGMRTVE 319 S+KLR R ++ Sbjct: 319 HSSKLRILERILD 331 >gi|294784753|ref|ZP_06750041.1| S-adenosyl-methyltransferase MraW [Fusobacterium sp. 3_1_27] gi|294486467|gb|EFG33829.1| S-adenosyl-methyltransferase MraW [Fusobacterium sp. 3_1_27] Length = 314 Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 109/313 (34%), Positives = 176/313 (56%), Gaps = 20/313 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+PVL + + L P + +D T G G +S + S+ +I++D+D A+ ++ Sbjct: 9 HIPVLYYETLDNLVINPDGIYIDCTLGGGSHSEGILERLSDKGLLISIDQDTNAIEYSKK 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + ++ +F+ F + GVD G++ D+GVSS Q+D RGFS++ L Sbjct: 69 RLEKFGSKWKVFKGNFENIDTIAYMAGVDKVDGILMDIGVSSKQLDDPKRGFSYRYDVKL 128 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ ISA DVVN + + L++I+ GEE+ A +IA IV+ R+S+P + T DL Sbjct: 129 DMRMNTEQKISAYDVVNTYSEEQLSKIIFEYGEERHARKIAKLIVEERKSSPIEKTSDLI 188 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +LI++ + + HPA ++FQA+RI VN E+E L + A + LK GG L +++FHS Sbjct: 189 ALIKRA--YPERASKHPAKKTFQAIRIEVNRELEVLENAMSKAVELLKVGGRLAIITFHS 246 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV------FQSITKKVVVPTQEDVAFNRRS 306 LEDR+VK F K +A P + V F+ ITKK ++P +++ N R+ Sbjct: 247 LEDRIVKNKF-----KDLATACKCPKDIPICVCGGVKKFEIITKKPIIPIDDELKNNNRA 301 Query: 307 RSAKLRAGMRTVE 319 S+KLR R ++ Sbjct: 302 HSSKLRILERILD 314 >gi|332297592|ref|YP_004439514.1| Ribosomal RNA small subunit methyltransferase H [Treponema brennaborense DSM 12168] gi|332180695|gb|AEE16383.1| Ribosomal RNA small subunit methyltransferase H [Treponema brennaborense DSM 12168] Length = 330 Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 111/307 (36%), Positives = 171/307 (55%), Gaps = 16/307 (5%) Query: 20 HVPVLLEKVIALLNPAPGK------VILDATFGAGGYSRSFCKMGSN--VIALDRDPFAV 71 H PVLL++ + L+P G+ ++D+T G GG+S +F S+ +I LD DP Sbjct: 5 HTPVLLQECLDALSPV-GEPFEREPFMIDSTLGEGGHSEAFLTKYSDLRIIGLDADPNIQ 63 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPD--KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 + +E + + + + F+ P D ++FDLG+S + RGFSF++ Sbjct: 64 ARAKERLAPFGSRMNFHLGWFNDFYANYPGDMPKPDLILFDLGISLFHYEKSGRGFSFRQ 123 Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMR++ +G SA D+VN + L I I GEE+ + RIA AI + R + +T Sbjct: 124 DEPLDMRLNPDAGPSAGDLVNSLSSAQLADIFYIYGEERYSRRIAAAIERERAQSKIETA 183 Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 L+ ++ ++V + ++ IHPAT++FQALRI VN E+ L + L +A LK GG + V Sbjct: 184 AALADIVYRSVPAAYRHGAIHPATKTFQALRIAVNRELNRLPEALPAAFNVLKCGGKMGV 243 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS--ITKKVVVPTQEDVAFNRR 305 ++FHSLEDR+VK +F + S KV P V + +T+K + P+ +VA N Sbjct: 244 ITFHSLEDRIVKNYFRNLS-KVCICPPEQPICICGGVPHAELLTRKPLGPSGAEVAVNSP 302 Query: 306 SRSAKLR 312 SRSAKLR Sbjct: 303 SRSAKLR 309 >gi|307720766|ref|YP_003891906.1| S-adenosyl-methyltransferase MraW [Sulfurimonas autotrophica DSM 16294] gi|306978859|gb|ADN08894.1| S-adenosyl-methyltransferase MraW [Sulfurimonas autotrophica DSM 16294] Length = 308 Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 110/305 (36%), Positives = 178/305 (58%), Gaps = 21/305 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 H+PVL ++VI +++D T G GG+S + N+ IA+D+D A+ + Sbjct: 6 HIPVLYKEVIEAFKDLKEGIVIDCTMGYGGHSSLLLEANQNIKLIAIDQDQTAIDFSSKR 65 Query: 78 MRDYKEQFSLFQATFSQ-----LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + Y E+ S+ + FS LQ+ P++ + G++ D+GVSS+Q+D +RGFS++ S Sbjct: 66 LEKYGERVSIRKGRFSAVIKEILQEVNPNE-IKGILADIGVSSLQLDQKERGFSYE-SDN 123 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM ++AS+VVN+ + +L RIL GE + +IA IV+ R PF + ++L Sbjct: 124 LDMRMDKDAQLNASNVVNEYSKTELERILLEYGELRNYKKIADVIVQNR---PFVSAKEL 180 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 S ++ + S+ +IHPAT QA+RI VN+E+ EL L+S E+A + ++SFH Sbjct: 181 SEAVRP--HMSRGKKIHPATLLMQAIRIEVNDELGELKSLLQSIEEAKLPEAKVAIISFH 238 Query: 252 SLEDRLVKKFFASRSGKVM----AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 SLEDR+VKK F+ S + A R +N + + +TKK ++ ++++ N RSR Sbjct: 239 SLEDRIVKKEFSKWSKSCICPPEAFRCSCGNNHQ--LGKILTKKPIMAQEDELKENVRSR 296 Query: 308 SAKLR 312 SAK+R Sbjct: 297 SAKMR 301 >gi|184201136|ref|YP_001855343.1| S-adenosyl-methyltransferase MraW [Kocuria rhizophila DC2201] gi|263456204|sp|B2GJQ6|RSMH_KOCRD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|183581366|dbj|BAG29837.1| methyltransferase MraW [Kocuria rhizophila DC2201] Length = 327 Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 117/311 (37%), Positives = 181/311 (58%), Gaps = 12/311 (3%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCG 74 HVPVLL++ + LL PA V+LDAT G GG++ + + + V+ +DRDP A+ Sbjct: 10 HVPVLLDRCLDLLAPALDTEAPVVLDATLGMGGHTHAMLERFPHLRVVGIDRDPQALELA 69 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++ + +F+ T+ + D GV DGV+FDLGVSS+Q+D +RGF++ Sbjct: 70 GRRLQRFGSRFASIHTTYDHIADAAAAAGVERVDGVLFDLGVSSLQLDERERGFAYSFDA 129 Query: 132 PLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S + +SA VVN+ + L I+ GE++ A RIA AIV R AP +TT Sbjct: 130 PLDMRMDSRAELSAYTVVNEYSEARLRDIIFRWGEDRFAPRIARAIVAARADAPLRTTAQ 189 Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L ++ V +++ + HPA ++FQALRI VN E++ L + + +A + ++ GG +I +S Sbjct: 190 LVDAVRSAVPAAAQHKKGHPAKQTFQALRIEVNEELDVLERAIPAAVETVRVGGRVIAMS 249 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 +HSLEDR+VK+ FA R + A R + H V + +T+ +++ N R+ S Sbjct: 250 YHSLEDRIVKQEFA-RGARSTAPRGFPVELPEHQPVLKVLTRGAERADEQETLENPRAAS 308 Query: 309 AKLRAGMRTVE 319 A+LRA R E Sbjct: 309 ARLRAVERLRE 319 >gi|199598136|ref|ZP_03211558.1| SAM-dependent methyltransferase for cell envelope biogenesis [Lactobacillus rhamnosus HN001] gi|199590897|gb|EDY98981.1| SAM-dependent methyltransferase for cell envelope biogenesis [Lactobacillus rhamnosus HN001] Length = 313 Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 112/303 (36%), Positives = 159/303 (52%), Gaps = 12/303 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H VLL++ A L +DAT G GG++R +N +IA D+D A++ + Sbjct: 6 HETVLLKEATAALAVKSDGTYVDATLGRGGHTRQILNQLTNGRLIAFDQDEAAIAAVKRQ 65 Query: 78 MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 Q +L F L + D + VDGV++DLGVSS Q D RGFS++ PLD Sbjct: 66 FGTLPPQLTLVHRNFRDLSAALADLDIRQVDGVLYDLGVSSPQFDDSKRGFSYRFDAPLD 125 Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM + A +VN+ +L RI GEE + +IA I + R AP TT L Sbjct: 126 MRMDQRQTLDAKTIVNEWPYAELVRIFSRYGEEHFSKQIARRIEQARAQAPITTTFQLVE 185 Query: 194 LIQKTVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 LI+ + +K R HPA + FQA+RI VN+E+ L L A K + GG + V++F Sbjct: 186 LIKAGIP-AKARRTGGHPAKKVFQAIRIAVNDELSALEASLEQALKLINVGGRISVITFQ 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDRLVK F S R + +P A P +Q + +K ++P+ ++A N R+ SA Sbjct: 245 SLEDRLVKTMFKEVSTVQDVPRGLPVVPEAAQPH-YQLVNRKPILPSAAELAENHRAHSA 303 Query: 310 KLR 312 KLR Sbjct: 304 KLR 306 >gi|324992001|gb|EGC23923.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus sanguinis SK405] gi|325688754|gb|EGD30763.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus sanguinis SK115] gi|327490522|gb|EGF22303.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus sanguinis SK1058] Length = 316 Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 105/309 (33%), Positives = 175/309 (56%), Gaps = 14/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGS--NVIALDRDPFAVSCGQE 76 H+ VLL + + L P + +DAT G G+S ++G ++ A D+D A+ ++ Sbjct: 7 HITVLLHETVDQLAVKPDGIYIDATLGGAGHSEYLLSQLGDEGHLYAFDQDQTAIDNAKK 66 Query: 77 TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y E+ + + F L+ + + GV DG+ +DLGVSS Q+D +RGFS+++ Sbjct: 67 RLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQRERGFSYKQDA 126 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ + ++A +VVN + +DL RI GE+K + +IA I + R P +TT + Sbjct: 127 PLDMRMNREAALTAFEVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQARSVKPIETTTE 186 Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ +I K+ +K + HPA + FQA+RI VN+E+ + ++ A L G + V+ Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDLLAVDGRIAVI 245 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F S V IP P + + +++K ++P++E++ N R+ Sbjct: 246 TFHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKL-ELVSRKPILPSKEELESNNRAH 304 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 305 SAKLRVARK 313 >gi|258508273|ref|YP_003171024.1| S-adenosyl-methyltransferase MraW [Lactobacillus rhamnosus GG] gi|257148200|emb|CAR87173.1| S-adenosyl-methyltransferase MraW [Lactobacillus rhamnosus GG] gi|259649590|dbj|BAI41752.1| methyltransferase [Lactobacillus rhamnosus GG] Length = 313 Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 112/303 (36%), Positives = 159/303 (52%), Gaps = 12/303 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H VLL++ A L +DAT G GG++R +N +IA D+D A++ + Sbjct: 6 HETVLLKEATAALAVKSDGTYVDATLGRGGHTRQIINQLTNGRLIAFDQDEAAIAAVKRQ 65 Query: 78 MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 Q +L F L + D + VDGV++DLGVSS Q D RGFS++ PLD Sbjct: 66 FGTLPPQLTLVHRNFRDLSAALADLDIRQVDGVLYDLGVSSPQFDDSKRGFSYRFDAPLD 125 Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM + A +VN+ +L RI GEE + +IA I + R AP TT L Sbjct: 126 MRMDQRQTLDAKTIVNEWPYAELVRIFSRYGEEHFSKQIARRIEQARAQAPITTTFQLVE 185 Query: 194 LIQKTVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 LI+ + +K R HPA + FQA+RI VN+E+ L L A K + GG + V++F Sbjct: 186 LIKAGIP-AKARRTGGHPAKKVFQAIRIAVNDELSALEASLEQALKLINVGGRISVITFQ 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDRLVK F S R + +P A P +Q + +K ++P+ ++A N R+ SA Sbjct: 245 SLEDRLVKTMFKEVSTVQDVPRGLPVVPEAAQPH-YQLVNRKPILPSAAELAENHRAHSA 303 Query: 310 KLR 312 KLR Sbjct: 304 KLR 306 >gi|224534257|ref|ZP_03674835.1| S-adenosyl-methyltransferase MraW [Borrelia spielmanii A14S] gi|224514359|gb|EEF84675.1| S-adenosyl-methyltransferase MraW [Borrelia spielmanii A14S] Length = 295 Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 105/302 (34%), Positives = 174/302 (57%), Gaps = 25/302 (8%) Query: 20 HVPVLLEKVIALLNPAPGK---VILDATFGAGGYSRSFC-KMGS-NVIALDRDPFAVSCG 74 H PVLL+ + L+ P K + +D+T G G ++++ K G +++ ++RD + Sbjct: 7 HFPVLLDAICKLIEDLPLKSNLIYIDSTLGEGVHAKAILEKYGFLSLVGIERDSQILERA 66 Query: 75 QETMRDYKEQFSLFQATFSQL-QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ +R ++ + + F F +Y + + ++ DLG+S +GFSF + PL Sbjct: 67 KQFLRIFEGRITYFNDWFDNFFANYPLNVKANFILVDLGISMFHYKGSKKGFSFFEDEPL 126 Query: 134 DMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 DMR+ SCS ISA+++VN + DL ++ L E + RI+ AIV+ R+ QTT++L Sbjct: 127 DMRLCSSCS-ISAAEIVNTFSRYDLESLIYNLSNEHYSRRISKAIVEYRKIKKIQTTKEL 185 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 S+I K FSK +I+PAT++FQALRI+VN+E+ L + L + L G+L +++FH Sbjct: 186 QSIISKVYPFSKF-KINPATKTFQALRIYVNDELARLKRSLPLWVENLAKDGILAIITFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 S+EDR+VK FF S S + A I+KK ++P+ +++ N+ SRSAKL Sbjct: 245 SIEDRIVKDFFKSLSCDLYA---------------KISKKPIIPSFDEIKKNKPSRSAKL 289 Query: 312 RA 313 RA Sbjct: 290 RA 291 >gi|152992227|ref|YP_001357948.1| S-adenosyl-methyltransferase MraW [Sulfurovum sp. NBC37-1] gi|262825720|sp|A6Q7Y2|RSMH_SULNB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|151424088|dbj|BAF71591.1| S-adenosyl-methyltransferase MraW [Sulfurovum sp. NBC37-1] Length = 307 Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 102/299 (34%), Positives = 170/299 (56%), Gaps = 8/299 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 H+PVLLE+V+ + P +D T G G+S K ++ I +DRD A++ ++ Sbjct: 5 HIPVLLEEVLESFSRVPEGYFVDCTLGYAGHSSEILKRYDHLKHIGIDRDDEALAFSKKR 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 + ++++ +L++ TF+ + + + V ++ D GVSS+Q+D +RGF+F S LDMRM Sbjct: 65 LEPFRDRSTLYKGTFATVLPTLKEAPVTALLADFGVSSLQLDKKERGFAFD-SETLDMRM 123 Query: 138 SCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 + +SA +VVN + L I GE + ++A A+V R AP ++ + LS + + Sbjct: 124 DANAPLSAYEVVNTYPKEKLEYIFDTYGEVRSYKKLASAVVDARAKAPIESAKALSEIAK 183 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 + +IHPAT FQA+RI VNNE+ E+ L + E G ++ +++FHSLEDR Sbjct: 184 GVI--PPGGKIHPATLMFQAIRIEVNNELGEIEGLLDAIEAKHYEGEVVSLITFHSLEDR 241 Query: 257 LVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 LVK F S + + H I A+ +++++K V ++E++ N RSRSAKLR+ Sbjct: 242 LVKNRFRKWSQECICDPHAIRCTCGKKHALGKALSRKPVTASKEELRVNPRSRSAKLRS 300 >gi|327459305|gb|EGF05651.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus sanguinis SK1] Length = 316 Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 105/309 (33%), Positives = 175/309 (56%), Gaps = 14/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGS--NVIALDRDPFAVSCGQE 76 H+ VLL + + L P + +DAT G G+S ++G ++ A D+D A+ ++ Sbjct: 7 HITVLLHETVDQLAVKPDGIYIDATLGGAGHSEYLLSQLGDEGHLYAFDQDQTAIDNAKK 66 Query: 77 TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y E+ + + F L+ + + GV DG+ +DLGVSS Q+D +RGFS+++ Sbjct: 67 RLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQRERGFSYKQDA 126 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ + ++A +VVN + +DL RI GE+K + +IA I + R P +TT + Sbjct: 127 PLDMRMNREAALTAFEVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQARSIKPIETTTE 186 Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ +I K+ +K + HPA + FQA+RI VN+E+ + ++ A L G + V+ Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDLLAVDGRIAVI 245 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F S V IP P + + +++K ++P++E++ N R+ Sbjct: 246 TFHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKL-ELVSRKPILPSKEELESNNRAH 304 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 305 SAKLRVARK 313 >gi|29348864|ref|NP_812367.1| S-adenosyl-methyltransferase MraW [Bacteroides thetaiotaomicron VPI-5482] gi|253568789|ref|ZP_04846199.1| S-adenosyl-methyltransferase mraW [Bacteroides sp. 1_1_6] gi|298387947|ref|ZP_06997496.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 1_1_14] gi|42558980|sp|Q8A251|RSMH_BACTN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|29340770|gb|AAO78561.1| S-adenosyl-methyltransferase mraW [Bacteroides thetaiotaomicron VPI-5482] gi|251840808|gb|EES68889.1| S-adenosyl-methyltransferase mraW [Bacteroides sp. 1_1_6] gi|298259354|gb|EFI02229.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 1_1_14] Length = 304 Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 107/300 (35%), Positives = 163/300 (54%), Gaps = 16/300 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HVPVLL++ + +N P +D TFG G+SR G ++ D+D + Sbjct: 9 HVPVLLKESVDGMNIHPDGTYVDVTFGGAGHSREILSRLGEGGRLLGFDQDE---DAERN 65 Query: 77 TMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + D F+ ++ F LQ+ Y + VD ++ DLGVSS D +RGFSF+ G L Sbjct: 66 IVND--PHFTFVRSNFRYLQNFLRYHDIEQVDAILADLGVSSHHFDDSERGFSFRFDGAL 123 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +G++A+D+VN + L I + GE K + ++A AIVK R +T + Sbjct: 124 DMRMNKRAGLTAADIVNTYEEERLANIFYLYGELKNSRKLASAIVKARNGQSIRTIGEFL 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ F + + FQALRI VN E+E L + L +A +ALK GG L+V+++HS Sbjct: 184 EIIKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLAAATEALKPGGRLVVITYHS 241 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK + + + A + P F+ + KV+VP + ++ N RSRSAKLR Sbjct: 242 LEDRMVKNIMKTGNVEGKAETDFFGNLQTP--FRLVNNKVIVPDEAEIERNPRSRSAKLR 299 >gi|313678556|ref|YP_004056296.1| S-adenosyl-methyltransferase MraW [Mycoplasma bovis PG45] gi|312950217|gb|ADR24812.1| S-adenosyl-methyltransferase MraW [Mycoplasma bovis PG45] Length = 300 Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 111/300 (37%), Positives = 160/300 (53%), Gaps = 17/300 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H+P+LL++ I LN + +D T G GG+S K N ++ D+D FA+ ++ Sbjct: 5 HIPILLKEAINSLNIKSNGIYVDLTVGMGGHSAEILKKLDNGMLVGFDKDLFAIEESRKR 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + F L + F + D + VDG++ DLG+SS Q+D +RGFS+ K LD Sbjct: 65 LSKIGLNFQLIHSDFVNVTDELAKLNITAVDGILVDLGISSPQVDNAERGFSYNKDARLD 124 Query: 135 MRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM+ + + A VVN + +L I E K A ++A+AI K R P TT +LS Sbjct: 125 MRMNTNQVLDAHFVVNNYDENNLISIFYNYAEVKLAKQVANAIAKNR---PINTTLELSE 181 Query: 194 LIQKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I K+ Y +K ++ +P FQA+RI VNNE + L A LK L V+SFHS Sbjct: 182 II-KSAYPAKLLSQKNPCKAVFQAIRIEVNNEFSSIESMLSQALNLLKKDSSLAVISFHS 240 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LED LVKKFF G ++ +H PS + KV P++ ++ N RSRSAKLR Sbjct: 241 LEDSLVKKFF----GNLIKSKH--PSKMPIKEDKKYIVKVYNPSKSEIELNNRSRSAKLR 294 >gi|320352815|ref|YP_004194154.1| S-adenosyl-methyltransferase MraW [Desulfobulbus propionicus DSM 2032] gi|320121317|gb|ADW16863.1| S-adenosyl-methyltransferase MraW [Desulfobulbus propionicus DSM 2032] Length = 306 Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 99/301 (32%), Positives = 171/301 (56%), Gaps = 25/301 (8%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRD 80 +L++V+ L P P + +D T G GG++++ + + V+ + D A ++ + Sbjct: 1 MLDEVLHWLQPRPNALYVDGTLGLGGHAQAILEQTAPSGRVVGFEWDDDAAQAARQRLSG 60 Query: 81 YKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 Y ++ S+ ++ L + GV +G++ DLGVSS+Q+D +RGFSF+ LDMRM Sbjct: 61 YGDRLSIVHGSYGDLVPELAKLGVVEIEGLLVDLGVSSLQLDRAERGFSFRTDSVLDMRM 120 Query: 138 SC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 S ++A+ ++ QA+ + L I GEE+QA RIA + + R+ P TT L++++ Sbjct: 121 DRRSPLTAASLIAQASEEQLADIFYHYGEERQARRIARFLAEAREKEPVATTGRLAAIVA 180 Query: 197 KTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + V + ++H AT+ FQALRI VN E+ L + L++A + L G + +++FHSLED Sbjct: 181 EAVPRKYHPAKVHVATKVFQALRIAVNGELNNLTRLLQTAPQVLAEGARVCIITFHSLED 240 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 R+VK+ F + +PA ++ +T++ V P+ E++ N R+RSAKLR Sbjct: 241 RIVKQAFQN----------------NPA-YEVVTRRPVEPSAEEIRRNPRARSAKLRVAR 283 Query: 316 R 316 R Sbjct: 284 R 284 >gi|34763068|ref|ZP_00144041.1| S-adenosyl-methyltransferase mraW [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887267|gb|EAA24365.1| S-adenosyl-methyltransferase mraW [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 331 Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 109/313 (34%), Positives = 176/313 (56%), Gaps = 20/313 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+PVL + + L P + +D T G G +S + S+ +I++D+D A+ ++ Sbjct: 26 HIPVLYYETLDNLVINPDGIYIDCTLGGGSHSEGILERLSDKGLLISIDQDTNAIEYSKK 85 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + ++ +F+ F + GVD G++ D+GVSS Q+D RGFS++ L Sbjct: 86 RLEKFGSKWKVFKGNFENIDTIAYMAGVDKVDGILMDIGVSSKQLDDPKRGFSYRYDVKL 145 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ ISA DVVN + + L++I+ GEE+ A +IA IV+ R+S+P + T DL Sbjct: 146 DMRMNIEQKISAYDVVNTYSEEQLSKIIFEYGEERHARKIAKLIVEERKSSPIEKTSDLI 205 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +LI++ + + HPA ++FQA+RI VN E+E L + A + LK GG L +++FHS Sbjct: 206 ALIKRA--YPERASKHPAKKTFQAIRIEVNRELEVLENAMSKAVELLKVGGRLAIITFHS 263 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV------FQSITKKVVVPTQEDVAFNRRS 306 LEDR+VK F K +A P + V F+ ITKK ++P +++ N R+ Sbjct: 264 LEDRIVKNKF-----KDLATACKCPKDIPICVCGGVKKFEIITKKPIIPIDDELKNNNRA 318 Query: 307 RSAKLRAGMRTVE 319 S+KLR R ++ Sbjct: 319 HSSKLRILERILD 331 >gi|327472730|gb|EGF18157.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus sanguinis SK408] Length = 316 Score = 167 bits (422), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 105/309 (33%), Positives = 175/309 (56%), Gaps = 14/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGS--NVIALDRDPFAVSCGQE 76 H+ VLL + + L P + +DAT G G+S ++G ++ A D+D A+ ++ Sbjct: 7 HITVLLHETVDQLAVKPDGIYIDATLGGAGHSEYLLSQLGDEGHLYAFDQDQTAIDNAKK 66 Query: 77 TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y E+ + + F L+ + + GV DG+ +DLGVSS Q+D +RGFS+++ Sbjct: 67 RLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQRERGFSYKQDA 126 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ + ++A +VVN + +DL RI GE+K + +IA I + R P +TT + Sbjct: 127 PLDMRMNRDAALTAFEVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQARSIKPIETTTE 186 Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ +I K+ +K + HPA + FQA+RI VN+E+ + ++ A L G + V+ Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDLLAVDGRIAVI 245 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F S V IP P + + +++K ++P++E++ N R+ Sbjct: 246 TFHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKL-ELVSRKPILPSKEELESNNRAH 304 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 305 SAKLRVARK 313 >gi|149275993|ref|ZP_01882138.1| S-adenosyl-methyltransferase MraW [Pedobacter sp. BAL39] gi|149233421|gb|EDM38795.1| S-adenosyl-methyltransferase MraW [Pedobacter sp. BAL39] Length = 301 Score = 167 bits (422), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 118/303 (38%), Positives = 158/303 (52%), Gaps = 14/303 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76 HVPV+L++ I LN P V +D TFG GG+SR K +G + +I+ D+DP A + Sbjct: 6 HVPVMLKECIDGLNIKPDGVYVDVTFGGGGHSREILKHLGKDGVLISFDQDPDAQLNKID 65 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 R Y + F+ + +L Y K VDG++ DLGVSS Q D +RGFS + LD Sbjct: 66 DPRFYFVDQNFAFLKNNL-RLLGY---KTVDGILADLGVSSHQFDVPERGFSTRFESLLD 121 Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM G + ASDV+N L +I GI GE K A +A+A+V R P + D Sbjct: 122 MRMDKQGALKASDVLNTYTEDQLHKIFGIYGEVKNAKSLANAVVTGRLERPIASLADFKR 181 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 + K + FQALRI VN EI L L LK GG L+V+S+HSL Sbjct: 182 --AAAAHIPKGKEHKYMAQVFQALRIEVNAEITVLESFLMQTADVLKEGGRLVVMSYHSL 239 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 EDR VK F A K + + P F+ IT+K +V ++V N R+RSAKLR Sbjct: 240 EDRPVKSFIAKGKFKGEVEKDFFGNELKP--FKVITRKAIVAEPDEVERNSRARSAKLRI 297 Query: 314 GMR 316 G + Sbjct: 298 GEK 300 >gi|88909214|sp|Q4FQ05|RSMH_PSYA2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 334 Score = 167 bits (422), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 108/287 (37%), Positives = 160/287 (55%), Gaps = 15/287 (5%) Query: 39 VILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95 + +DATFG GG+SR + +I D+DP A+ QE + + + +F+ L Sbjct: 45 IYVDATFGRGGHSRLLLSQLADNATLIVFDKDPTAIRVAQE-LASTDSRVQVVHDSFATL 103 Query: 96 QDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQA 151 D + G VDG++ DLG+SS QID G RGFSF + G +DMRM S G S ++ + Sbjct: 104 TDSLAAMGITQVDGLMADLGISSPQIDDGSRGFSFMRDGAVDMRMDTSRGQSVAEWLETV 163 Query: 152 NVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPAT 211 + L +L GEE+ + RIA AI +Q +++T +L+ +I K + + HPAT Sbjct: 164 DDDTLANVLYDFGEERHSRRIARAI---KQMDRYKSTLELAEVI-KVAHPNWQRGKHPAT 219 Query: 212 RSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRS-GKVM 270 +SFQA+RIF+NNE+ ++ L + LK GG L V+SFHSLEDR +K+F S G+ Sbjct: 220 QSFQAMRIFINNELGDVDNFLEQSIPILKVGGQLAVISFHSLEDRRIKQFLQRHSKGQYP 279 Query: 271 AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 ++ P F K V P++ +++ N RSRSA LR RT Sbjct: 280 EDENLPMPPKRPRYFSK--PKRVGPSKAEISNNPRSRSAWLRMATRT 324 >gi|125718671|ref|YP_001035804.1| S-adenosyl-methyltransferase MraW [Streptococcus sanguinis SK36] gi|262827313|sp|A3CPZ9|RSMH_STRSV RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|125498588|gb|ABN45254.1| S-adenosyl-methyltransferase mraW, putative [Streptococcus sanguinis SK36] gi|324994098|gb|EGC26012.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus sanguinis SK678] Length = 316 Score = 167 bits (422), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 105/309 (33%), Positives = 175/309 (56%), Gaps = 14/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGS--NVIALDRDPFAVSCGQE 76 H+ VLL + + L P + +DAT G G+S ++G ++ A D+D A+ ++ Sbjct: 7 HITVLLHETVDQLAVKPDGIYVDATLGGAGHSEYLLSQLGDEGHLYAFDQDQTAIDNAKK 66 Query: 77 TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y E+ + + F L+ + + GV DG+ +DLGVSS Q+D +RGFS+++ Sbjct: 67 RLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQRERGFSYKQDA 126 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ + ++A +VVN + +DL RI GE+K + +IA I + R P +TT + Sbjct: 127 PLDMRMNREAALTAFEVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQARSVKPIETTTE 186 Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ +I K+ +K + HPA + FQA+RI VN+E+ + ++ A L G + V+ Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDLLAVDGRIAVI 245 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F S V IP P + + +++K ++P++E++ N R+ Sbjct: 246 TFHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKL-ELVSRKPILPSKEELESNNRAH 304 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 305 SAKLRVARK 313 >gi|71066610|ref|YP_265337.1| S-adenosyl-methyltransferase MraW [Psychrobacter arcticus 273-4] gi|71039595|gb|AAZ19903.1| probable S-adenosyl-methyltransferase [Psychrobacter arcticus 273-4] Length = 384 Score = 167 bits (422), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 108/287 (37%), Positives = 160/287 (55%), Gaps = 15/287 (5%) Query: 39 VILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95 + +DATFG GG+SR + +I D+DP A+ QE + + + +F+ L Sbjct: 95 IYVDATFGRGGHSRLLLSQLADNATLIVFDKDPTAIRVAQE-LASTDSRVQVVHDSFATL 153 Query: 96 QDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQA 151 D + G VDG++ DLG+SS QID G RGFSF + G +DMRM S G S ++ + Sbjct: 154 TDSLAAMGITQVDGLMADLGISSPQIDDGSRGFSFMRDGAVDMRMDTSRGQSVAEWLETV 213 Query: 152 NVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPAT 211 + L +L GEE+ + RIA AI +Q +++T +L+ +I K + + HPAT Sbjct: 214 DDDTLANVLYDFGEERHSRRIARAI---KQMDRYKSTLELAEVI-KVAHPNWQRGKHPAT 269 Query: 212 RSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRS-GKVM 270 +SFQA+RIF+NNE+ ++ L + LK GG L V+SFHSLEDR +K+F S G+ Sbjct: 270 QSFQAMRIFINNELGDVDNFLEQSIPILKVGGQLAVISFHSLEDRRIKQFLQRHSKGQYP 329 Query: 271 AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 ++ P F K V P++ +++ N RSRSA LR RT Sbjct: 330 EDENLPMPPKRPRYFSK--PKRVGPSKAEISNNPRSRSAWLRMATRT 374 >gi|258438778|ref|ZP_05689931.1| S-adenosyl-methyltransferase mraW [Staphylococcus aureus A9299] gi|257848037|gb|EEV72030.1| S-adenosyl-methyltransferase mraW [Staphylococcus aureus A9299] Length = 311 Score = 167 bits (422), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 101/305 (33%), Positives = 163/305 (53%), Gaps = 11/305 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+ V+L + I LN V +D T G G++ ++ +IA+D+D A+ +E Sbjct: 4 HISVMLNETIDYLNVKENGVYIDCTLGGAGHALYLLNQLNDDGRLIAIDQDQTAIDNAKE 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++D+ + + + F +L + D + VDG+ +DLGVSS Q+D +RGFS+ L Sbjct: 64 VLKDHLHKVTFVHSNFRELTQILKDLNIEKVDGIYYDLGVSSPQLDIPERGFSYHHDATL 123 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM ++A ++VN + + L +I GEEK + +IA I + P TT +L Sbjct: 124 DMRMDQTQELTAYEIVNNWSYEALVKIFYRYGEEKFSKQIARRIEAHCEQQPITTTLELV 183 Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I++ + ++ HPA R FQALRI VN+E+ + A + +K G + V++FH Sbjct: 184 DIIKEGIPAKARRKGGHPAKRVFQALRIAVNDELSAFEDSIEQAIELVKVDGRISVITFH 243 Query: 252 SLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDRL K+ F R + IP P + + + +K + T+ED+ N R+RSA Sbjct: 244 SLEDRLCKQVFQEYEKGPEVPRGLPVIPEAYTPKL-KRVNRKPITATEEDLDDNNRARSA 302 Query: 310 KLRAG 314 KLR Sbjct: 303 KLRVA 307 >gi|260495075|ref|ZP_05815204.1| MraW methylase [Fusobacterium sp. 3_1_33] gi|260197518|gb|EEW95036.1| MraW methylase [Fusobacterium sp. 3_1_33] Length = 314 Score = 167 bits (422), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 109/313 (34%), Positives = 174/313 (55%), Gaps = 20/313 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+PVL + + L P V +D T G G +S + S+ +I++D+D A+ ++ Sbjct: 9 HIPVLYYETLDNLVINPDGVYIDCTLGGGSHSEGILERLSDKGLLISIDQDSTAIEYSKK 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + ++ +F+ F + GVD G++ D+GVSS Q+D RGFS++ L Sbjct: 69 RLEKFGSKWKVFKGNFENIDTIAYMAGVDKVDGILMDIGVSSKQLDDPKRGFSYRYDVKL 128 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ ISA D+VN + L++I+ GEE+ A +IA IV+ R+S+P T DL Sbjct: 129 DMRMNTDQKISAYDIVNTYTEEQLSKIIFEYGEERHARKIAKLIVEERKSSPIGKTSDLI 188 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +LI++ + + HPA ++FQA+RI VN E+E L + A + LK GG L +++FHS Sbjct: 189 TLIKRA--YPERASKHPAKKTFQAIRIEVNRELEVLGNAISKAAELLKVGGRLAIITFHS 246 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV------FQSITKKVVVPTQEDVAFNRRS 306 LEDR+VK F K +A P + V F+ ITKK ++P +++ N R+ Sbjct: 247 LEDRIVKNKF-----KDLATACKCPKDIPICVCGGVKKFEIITKKPIIPIDDELKNNNRA 301 Query: 307 RSAKLRAGMRTVE 319 S+KLR R ++ Sbjct: 302 HSSKLRILERILD 314 >gi|218131855|ref|ZP_03460659.1| hypothetical protein BACEGG_03477 [Bacteroides eggerthii DSM 20697] gi|217986158|gb|EEC52497.1| hypothetical protein BACEGG_03477 [Bacteroides eggerthii DSM 20697] Length = 305 Score = 167 bits (422), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 107/300 (35%), Positives = 161/300 (53%), Gaps = 16/300 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H+PVLL + +N P +D TFG GG+SR G ++ D+D Q Sbjct: 8 HIPVLLMPSVDGMNIRPDGTYVDMTFGGGGHSREILSRLGEGGRLLGFDQDE---DAEQN 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + D F+ ++ F L +++ G VD ++ DLGVSS D +RGFSF+ G L Sbjct: 65 IVND--PHFTFVRSNFRYLHNFLRYHGIEQVDAILADLGVSSHHFDDSERGFSFRFDGML 122 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +G +A+D+VN + L I + GE K + ++A IVK R + T D Sbjct: 123 DMRMNKRAGCTAADIVNTYEEERLADIFYLYGELKNSRKLASVIVKARATRQISTIGDFL 182 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ F + + FQALRI VN E+E L + L +A +ALK GG L+V+++HS Sbjct: 183 DIIKPL--FGREREKKELAKVFQALRIEVNREMEALKEMLYAATEALKPGGRLVVITYHS 240 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK + + + A + + P F+ + KV+VP + ++ N RSRSAKLR Sbjct: 241 LEDRMVKNIMKTGNIEGKAEKDFFGNIQTP--FRLVNNKVIVPDETEIERNPRSRSAKLR 298 >gi|256846119|ref|ZP_05551577.1| MraW methylase [Fusobacterium sp. 3_1_36A2] gi|256719678|gb|EEU33233.1| MraW methylase [Fusobacterium sp. 3_1_36A2] Length = 314 Score = 167 bits (422), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 111/314 (35%), Positives = 179/314 (57%), Gaps = 22/314 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+PVL + + L P + +D T G G +S + S+ +I++D+D A+ ++ Sbjct: 9 HIPVLYYETLDNLVINPDGIYIDCTLGGGSHSEGILERLSDKGLLISIDQDTNAIEYSKK 68 Query: 77 TMRDYKEQFSLFQATFSQLQD--YVP--DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + ++ +F+ F + Y+ DK VDG++ D+GVSS Q+D RGFS++ Sbjct: 69 RLEKFGSKWKVFKGNFENIDTIAYMASVDK-VDGILMDIGVSSKQLDDPKRGFSYRYDVK 127 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ ISA DVVN + + L++I+ GEE+ A +IA IV+ R+S+P + T DL Sbjct: 128 LDMRMNTEQKISAYDVVNTYSEEQLSKIIFEYGEERHARKIAKLIVEERKSSPIEKTSDL 187 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +LI++ + + HPA ++FQA+RI VN E+E L + A + LK GG L +++FH Sbjct: 188 IALIKRA--YPERASKHPAKKTFQAIRIEVNRELEVLENAMSKAVELLKVGGRLAIITFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV------FQSITKKVVVPTQEDVAFNRR 305 SLEDR+VK F K +A P + V F+ ITKK ++P +++ N R Sbjct: 246 SLEDRIVKNKF-----KDLATACKCPKDIPICVCGGVKKFEIITKKPIIPIDDELKNNNR 300 Query: 306 SRSAKLRAGMRTVE 319 + S+KLR R ++ Sbjct: 301 AHSSKLRILERILD 314 >gi|229552071|ref|ZP_04440796.1| S-adenosyl-methyltransferase [Lactobacillus rhamnosus LMS2-1] gi|229314504|gb|EEN80477.1| S-adenosyl-methyltransferase [Lactobacillus rhamnosus LMS2-1] Length = 313 Score = 167 bits (422), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 112/303 (36%), Positives = 159/303 (52%), Gaps = 12/303 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H VLL++ A L +DAT G GG++R +N +IA D+D A++ + Sbjct: 6 HETVLLKEATAALAVKSDGTYVDATLGRGGHTRQILNQLTNGRLIAFDQDEAAIAAVKRH 65 Query: 78 MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 Q +L F L + D + VDGV++DLGVSS Q D RGFS++ PLD Sbjct: 66 FGTLPPQLTLVHRNFRDLSAALADLDIRQVDGVLYDLGVSSPQFDDSKRGFSYRFDAPLD 125 Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM + A +VN+ +L RI GEE + +IA I + R AP TT L Sbjct: 126 MRMDQRQTLDAKTIVNEWPYAELVRIFSRYGEEHFSKQIARRIEQARAQAPITTTFQLVE 185 Query: 194 LIQKTVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 LI+ + +K R HPA + FQA+RI VN+E+ L L A K + GG + V++F Sbjct: 186 LIKAGIP-AKARRTGGHPAKKVFQAIRIAVNDELSALEASLEQALKLINVGGRISVITFQ 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDRLVK F S R + +P A P +Q + +K ++P+ ++A N R+ SA Sbjct: 245 SLEDRLVKTMFKEVSTVQDVPRGLPVVPEAAQPH-YQLVNRKPILPSAAELAENHRAHSA 303 Query: 310 KLR 312 KLR Sbjct: 304 KLR 306 >gi|317474530|ref|ZP_07933804.1| MraW methylase [Bacteroides eggerthii 1_2_48FAA] gi|316909211|gb|EFV30891.1| MraW methylase [Bacteroides eggerthii 1_2_48FAA] Length = 305 Score = 167 bits (422), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 107/300 (35%), Positives = 161/300 (53%), Gaps = 16/300 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H+PVLL + +N P +D TFG GG+SR G ++ D+D Q Sbjct: 8 HIPVLLMPSVDGMNIRPDGTYVDMTFGGGGHSREILSRLGEGGRLLGFDQDE---DAEQN 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + D F+ ++ F L +++ G VD ++ DLGVSS D +RGFSF+ G L Sbjct: 65 IVND--PHFTFVRSNFRYLHNFLRYHGIEQVDAILADLGVSSHHFDDSERGFSFRFDGML 122 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +G +A+D+VN + L I + GE K + ++A IVK R + T D Sbjct: 123 DMRMNKRAGCTAADIVNTYEEERLADIFYLYGELKNSRKLASVIVKARATRQISTIGDFL 182 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ F + + FQALRI VN E+E L + L +A +ALK GG L+V+++HS Sbjct: 183 DIIKPL--FGREREKKELAKVFQALRIEVNREMEALKEMLYAATEALKPGGRLVVITYHS 240 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK + + + A + + P F+ + KV+VP + ++ N RSRSAKLR Sbjct: 241 LEDRMVKNIMKTGNIEGKAEKDFFGNVQTP--FRLVNNKVIVPDETEIERNPRSRSAKLR 298 >gi|325697683|gb|EGD39568.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus sanguinis SK160] Length = 316 Score = 167 bits (422), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 105/309 (33%), Positives = 175/309 (56%), Gaps = 14/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGS--NVIALDRDPFAVSCGQE 76 H+ VLL + + L P + +DAT G G+S ++G ++ A D+D A+ ++ Sbjct: 7 HITVLLHETVDQLAVKPDGIYVDATLGGAGHSEYLLSQLGDEGHLYAFDQDQTAIDNAKK 66 Query: 77 TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y E+ + + F L+ + + GV DG+ +DLGVSS Q+D +RGFS+++ Sbjct: 67 RLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQRERGFSYKQDA 126 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ + ++A +VVN + +DL RI GE+K + +IA I + R P +TT + Sbjct: 127 PLDMRMNREAALTAFEVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQARSIKPIETTTE 186 Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ +I K+ +K + HPA + FQA+RI VN+E+ + ++ A L G + V+ Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDLLAVDGRIAVI 245 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F S V IP P + + +++K ++P++E++ N R+ Sbjct: 246 TFHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKL-ELVSRKPILPSKEELESNNRAH 304 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 305 SAKLRVARK 313 >gi|116515077|ref|YP_802706.1| S-adenosyl-dependent methyl transferase [Buchnera aphidicola str. Cc (Cinara cedri)] gi|122285527|sp|Q057T6|RSMH_BUCCC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|116256931|gb|ABJ90613.1| S-adenosyl-dependent methyl transferase [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 307 Score = 167 bits (422), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 100/267 (37%), Positives = 165/267 (61%), Gaps = 15/267 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H+PVLL++ I LN + +D TFG GG+++ K + ++D+D +V+ G++ Sbjct: 3 HIPVLLKETINALNIKKNGIYIDGTFGNGGHTKEILKYLGQSGKLYSIDQDIKSVNKGKK 62 Query: 77 TMRDYKEQFSLFQATFSQLQDYV----PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 ++D ++FS+ FS+ Y+ K +DG++ DLG+SS QI+ DRGFSF K+G Sbjct: 63 -IKD--KRFSIIFGKFSKKIPYIYKKNKKKKIDGILLDLGISSNQINQNDRGFSFMKNGL 119 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ +GI A + +++ K++ ++L GEE+ + +I++AI R + T DL Sbjct: 120 LDMRMNNTTGIPAWKWLKKSSQKEIEKVLRKYGEERYSKKISYAIYNRNKKKTITQTLDL 179 Query: 192 SSLIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+K + K ++ HPATR+FQA+RI +NNEI+EL + L+ + K LK L+++ F Sbjct: 180 VQIIKKAI--PKIDKYKHPATRTFQAIRIHINNEIKELKKTLKISIKILKKKRRLVIICF 237 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIP 277 HSLE+R+VK FF + GK + +P Sbjct: 238 HSLENRIVKNFF-KKHGKTFFIPRGLP 263 >gi|255527766|ref|ZP_05394619.1| S-adenosyl-methyltransferase MraW [Clostridium carboxidivorans P7] gi|296186678|ref|ZP_06855080.1| S-adenosyl-methyltransferase MraW [Clostridium carboxidivorans P7] gi|296187067|ref|ZP_06855466.1| S-adenosyl-methyltransferase MraW [Clostridium carboxidivorans P7] gi|255508553|gb|EET84940.1| S-adenosyl-methyltransferase MraW [Clostridium carboxidivorans P7] gi|296048354|gb|EFG87789.1| S-adenosyl-methyltransferase MraW [Clostridium carboxidivorans P7] gi|296048715|gb|EFG88147.1| S-adenosyl-methyltransferase MraW [Clostridium carboxidivorans P7] Length = 309 Score = 167 bits (422), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 109/308 (35%), Positives = 167/308 (54%), Gaps = 15/308 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 HV VLLE+ I LN + +D T G GG+S K S +I +D+D A+ + Sbjct: 5 HVSVLLEETIDALNVKEDGIYVDCTLGGGGHSYEILKRLSPKGRLIGIDQDTAALKAAGD 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ + + F + + + + + VDG++ DLGVSS Q+D +RGFS+ K PL Sbjct: 65 RLKQFN-NVTYVHNNFYNIDEILQELNIEKVDGIMMDLGVSSYQLDEAERGFSYMKDAPL 123 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ S SA D+VN + + + +I+ GE+ A RIA IV+RR+ +TT +L Sbjct: 124 DMRMNRDSSTSAYDIVNFYSEEQIFKIIKEYGEDNFAKRIAKFIVQRREKETIKTTLELV 183 Query: 193 SLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I++ + F K+ HPA R+FQA+RI VN E++ L + + + L GG + +++F Sbjct: 184 DIIRQAIPARFQKDG--HPAKRTFQAIRIEVNRELQILDKAVEDSVNRLNKGGRIAIITF 241 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 HSLEDR +K F M P V + I+KK + P+ E+ N RS+S Sbjct: 242 HSLEDRKIKVKFKQLENPCTCPPDFPMCVCGKKPLV-KLISKKPIEPSIEESENNSRSKS 300 Query: 309 AKLRAGMR 316 AKLR R Sbjct: 301 AKLRVAER 308 >gi|327462427|gb|EGF08752.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus sanguinis SK1057] Length = 316 Score = 167 bits (422), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 105/309 (33%), Positives = 175/309 (56%), Gaps = 14/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGS--NVIALDRDPFAVSCGQE 76 H+ VLL + + L P + +DAT G G+S ++G ++ A D+D A+ ++ Sbjct: 7 HITVLLHETVDQLAVKPEGIYVDATLGGAGHSEYLLSQLGDEGHLYAFDQDQTAIDNAKK 66 Query: 77 TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y E+ + + F L+ + + GV DG+ +DLGVSS Q+D +RGFS+++ Sbjct: 67 RLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQRERGFSYKQDA 126 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ + ++A +VVN + +DL RI GE+K + +IA I + R P +TT + Sbjct: 127 PLDMRMNRDAALTAFEVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQARSVKPIETTTE 186 Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ +I K+ +K + HPA + FQA+RI VN+E+ + ++ A L G + V+ Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDLLAVDGRIAVI 245 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F S V IP P + + +++K ++P++E++ N R+ Sbjct: 246 TFHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKL-ELVSRKPILPSKEELESNNRAH 304 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 305 SAKLRVARK 313 >gi|304383929|ref|ZP_07366386.1| S-adenosyl-methyltransferase MraW [Prevotella marshii DSM 16973] gi|304335007|gb|EFM01280.1| S-adenosyl-methyltransferase MraW [Prevotella marshii DSM 16973] Length = 305 Score = 167 bits (422), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 110/301 (36%), Positives = 160/301 (53%), Gaps = 18/301 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAV-SCGQ 75 HVPVLL + + L P V +D TFG GG+SR G + A D+D A +C Sbjct: 9 HVPVLLTESVDGLKIRPNGVYVDVTFGGGGHSREILARLGKGGQLYAFDQDADAEQNCPD 68 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + ++F+ ++ F L++++ G+ DG++ DLGVSS D RGFSF+ + P Sbjct: 69 D------DRFTFVRSNFRYLKNWIHYYGIEKIDGLLADLGVSSHHFDDETRGFSFRFNAP 122 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ + +A+D+VN L+ + GE K A R+A AIV+ R P TTQDL Sbjct: 123 LDMRMNKRAKTTAADIVNHYTETQLSDLFYGYGELKNARRMAAAIVRERAENPIVTTQDL 182 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ + K + R FQALRI VN E+ L + L SA + L GG L ++++H Sbjct: 183 TDCMRPLI--RKEHEKKDMARLFQALRIEVNQEMTALKEMLESATELLSDGGRLSIITYH 240 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+VK + + + P Q I K VP+ ++ N RSRSAKL Sbjct: 241 SLEDRMVKNLMKTGNTDGEQKKDFFGRMETP--LQPIGNKPTVPSDDEQQRNPRSRSAKL 298 Query: 312 R 312 R Sbjct: 299 R 299 >gi|148243357|ref|YP_001228514.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. RCC307] gi|262825772|sp|A5GWA2|RSMH_SYNR3 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|147851667|emb|CAK29161.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. RCC307] Length = 299 Score = 167 bits (422), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 114/318 (35%), Positives = 171/318 (53%), Gaps = 38/318 (11%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGK-VILDATFGAGGYSRSFCKM--GSNVIALD 65 MSS+ HH PVL ++V+ L P + V+LDAT G GG+S + G +I LD Sbjct: 1 MSSSFHHQ-----PVLPQQVLEALAELPDEGVLLDATVGGGGHSSLLLDVHPGWQLIGLD 55 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125 +DP A + + + + E+ L + F+ Y PD+ V V+ DLGVSS Q+D +RGF Sbjct: 56 QDPAARAAAAQQLERFGERVQLVASNFAA---YTPDQPVVAVLADLGVSSHQLDVPERGF 112 Query: 126 SFQKSGPLDMRMSCSGI--SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 SF+ GPLDMRM+ G +A+ ++++ L +L GEE+ + RIA + + Sbjct: 113 SFRADGPLDMRMNTEGDGETAAALIDRLEENALADLLFHYGEERLSRRIARRL---KTEG 169 Query: 184 PFQTTQDLSSLIQKTV---YFSK--NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 P+ + ++ + + Y K + RIH ATRSFQALRI VN+E+ L L A Sbjct: 170 PWDDGERGTAALAYAIAGCYPPKQRHGRIHAATRSFQALRIAVNDELGVLETLLNDAPNW 229 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L+ GG + V+SFHSLEDRLVK F + + I++K ++ +++ Sbjct: 230 LEPGGRIAVISFHSLEDRLVKNRFKADE-----------------RLRVISRKPLIASEQ 272 Query: 299 DVAFNRRSRSAKLRAGMR 316 + N R+RSAKLR R Sbjct: 273 EAEANPRARSAKLRVAER 290 >gi|332366385|gb|EGJ44136.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus sanguinis SK355] Length = 316 Score = 166 bits (421), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 105/309 (33%), Positives = 175/309 (56%), Gaps = 14/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGS--NVIALDRDPFAVSCGQE 76 H+ VLL + + L P + +DAT G G+S ++G ++ A D+D A+ ++ Sbjct: 7 HITVLLHETVDQLAVKPDGIYVDATLGGAGHSEYLLSQLGDEGHLYAFDQDQTAIDNAKK 66 Query: 77 TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y E+ + + F L+ + + GV DG+ +DLGVSS Q+D +RGFS+++ Sbjct: 67 RLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQRERGFSYKQDA 126 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ + ++A +VVN + +DL RI GE+K + +IA I + R P +TT + Sbjct: 127 PLDMRMNRDAALTAFEVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQARSVKPIETTTE 186 Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ +I K+ +K + HPA + FQA+RI VN+E+ + ++ A L G + V+ Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDLLAVDGRIAVI 245 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F S V IP P + + +++K ++P++E++ N R+ Sbjct: 246 TFHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKL-ELVSRKPILPSKEELESNNRAH 304 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 305 SAKLRVARK 313 >gi|124515896|gb|EAY57405.1| S-adenosyl-methyltransferase (MraW) [Leptospirillum rubarum] Length = 307 Score = 166 bits (421), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 109/301 (36%), Positives = 164/301 (54%), Gaps = 23/301 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQ-ETM 78 H+PV+ ++V+ +LN PG+ +DAT G GG++R+ + G +VIA+DRDP A+ + E + Sbjct: 17 HLPVMTKEVLEVLNVHPGQWYVDATLGQGGHARAILEAGGSVIAIDRDPKAIEKARLELL 76 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVD--GVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + E+ L + + +++P VD GVV D G S Q G SF GPLDMR Sbjct: 77 PIFGERLRLTCMNHAGMGEFLPSMRVDISGVVLDSGWSMAQASENGAGLSFDAEGPLDMR 136 Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF-QTTQDLSSL 194 M + +A D++ Q + ++L I GEE A I+ A+V+ R +T ++L++ Sbjct: 137 MDPTLERTAMDILEQQSAEELAAIFSNFGEEPLALPISRALVQSRSRGRLPRTPKELAAF 196 Query: 195 IQKTVYFSKN---NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + VY+ K +R HPATR F ALRI VN EI+ L +G+ L +G L V++FH Sbjct: 197 VS-GVYYRKGYRRSRRHPATRVFMALRIEVNGEIDSLVRGVSGVRSILGSGARLAVLTFH 255 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 S EDR +K F R + + QS K V+P + ++ N RSRSAKL Sbjct: 256 SREDREIKHLF----------REWV-REGWGRLLQS---KPVLPGKAEIEHNPRSRSAKL 301 Query: 312 R 312 R Sbjct: 302 R 302 >gi|330902009|gb|EGH33332.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv. japonica str. M301072PT] Length = 263 Score = 166 bits (421), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 101/261 (38%), Positives = 154/261 (59%), Gaps = 13/261 (4%) Query: 61 VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSM 116 ++ D+DP A++ GQ + +F + Q +F++L ++G V G++ DLGVSS Sbjct: 1 LLGFDKDPQAIATGQ-ALAAEDGRFVIVQRSFAELGSETQERGLAGKVSGILLDLGVSSP 59 Query: 117 QIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175 Q+D +RGFSF GPLDMRM + G+SA++ + A +++ R+ GEE+ A R+A+A Sbjct: 60 QLDDPERGFSFMNDGPLDMRMDPTCGVSAAEFIATAPAEEIARVFKEYGEERFAKRMANA 119 Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 +V RR+ PF+ T DL+ ++ K + +PATR+FQ LRI VNNE+ +L GL +A Sbjct: 120 VVARREVQPFERTADLAEVL-KVANPAWEKGKNPATRAFQGLRIHVNNELGDLEAGLEAA 178 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQ---SITKK 291 AL+ GG L+V+SFHSLEDR+VK F + G+ + +P P F+ I K Sbjct: 179 LDALEVGGRLVVISFHSLEDRIVKLFMRKLAKGEADNMPRNLPIQYKP--FEPKIKIHGK 236 Query: 292 VVVPTQEDVAFNRRSRSAKLR 312 + + N RSRSA +R Sbjct: 237 AQFASDVETKANPRSRSAVMR 257 >gi|332364602|gb|EGJ42371.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus sanguinis SK1059] Length = 316 Score = 166 bits (421), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 105/309 (33%), Positives = 175/309 (56%), Gaps = 14/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGS--NVIALDRDPFAVSCGQE 76 H+ VLL + + L P + +DAT G G+S ++G ++ A D+D A+ ++ Sbjct: 7 HITVLLHETVDQLAVKPDGIYVDATLGGAGHSEYLLSQLGDEGHLYAFDQDQTAIDNAKK 66 Query: 77 TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y E+ + + F L+ + + GV DG+ +DLGVSS Q+D +RGFS+++ Sbjct: 67 RLAPYIERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQRERGFSYKQDA 126 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ + ++A +VVN + +DL RI GE+K + +IA I + R P +TT + Sbjct: 127 PLDMRMNRDAALTAFEVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQARSVKPIETTTE 186 Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ +I K+ +K + HPA + FQA+RI VN+E+ + ++ A L G + V+ Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDLLAVDGRIAVI 245 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F S V IP P + + +++K ++P++E++ N R+ Sbjct: 246 TFHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKL-ELVSRKPILPSKEELESNNRAH 304 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 305 SAKLRVARK 313 >gi|327467238|gb|EGF12742.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus sanguinis SK330] Length = 316 Score = 166 bits (421), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 105/309 (33%), Positives = 175/309 (56%), Gaps = 14/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGS--NVIALDRDPFAVSCGQE 76 H+ VLL + + L P + +DAT G G+S ++G ++ A D+D A+ ++ Sbjct: 7 HITVLLHETVDQLAVKPDGIYVDATLGGAGHSEYLLSQLGDEGHLYAFDQDQTAIDNAKK 66 Query: 77 TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y E+ + + F L+ + + GV DG+ +DLGVSS Q+D +RGFS+++ Sbjct: 67 RLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQRERGFSYKQDA 126 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ + ++A +VVN + +DL RI GE+K + +IA I + R P +TT + Sbjct: 127 PLDMRMNREAALTAFEVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQARSVKPIETTTE 186 Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ +I K+ +K + HPA + FQA+RI VN+E+ + ++ A L G + V+ Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQRAIDLLAVDGRIAVI 245 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F S V IP P + + +++K ++P++E++ N R+ Sbjct: 246 TFHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKL-ELVSRKPILPSKEELESNNRAH 304 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 305 SAKLRVARK 313 >gi|149920500|ref|ZP_01908968.1| methyltransferase [Plesiocystis pacifica SIR-1] gi|149818681|gb|EDM78126.1| methyltransferase [Plesiocystis pacifica SIR-1] Length = 331 Score = 166 bits (421), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 118/317 (37%), Positives = 170/317 (53%), Gaps = 27/317 (8%) Query: 20 HVPVLLEKVIALLNPA----PGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSC 73 H VL E V+ L PA P ++D T GAGG++ + + V+ +DRDP A+ Sbjct: 5 HESVLAEAVVTALVPAIDSVPEGALVDVTCGAGGHTAALLARCTPNRVVLVDRDPAALEH 64 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQKS 130 + + A F+ + GV V + DLGVSS Q+D +RGFSF+ Sbjct: 65 ARRRLHGAACTVDFCHAPFADFAAELDRLGVGTVSALIADLGVSSHQLDTAERGFSFRAD 124 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM + G +A+ + V +L R+L GEE +A+RIA AI+ R QTT+ Sbjct: 125 APLDMRMDPTRGETAAARLAAMTVDELVRVLRRYGEEAEAARIAPAILAARP----QTTK 180 Query: 190 DLSSLIQKTVYF----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 L+ ++++ + + RIHPATR+FQALRI VN E+++L + L L GG + Sbjct: 181 VLAEVVEQAMSARSRRALGKRIHPATRTFQALRILVNGELDQLDRLLEDGPARLAVGGRM 240 Query: 246 IVVSFHSLEDRLVKKFFAS--RSGKVMAVRHMIPSN-------AHPAVFQSITKKVVVPT 296 V+SFHSLEDR VK+ FA R+ K+ A + + AH V I++K VV Sbjct: 241 GVISFHSLEDRPVKQRFAKLCRAPKLPASLPLTTAELEARGFRAHFGVPAEISRKGVVAD 300 Query: 297 QEDVAFNRRSRSAKLRA 313 + + N RSRSA+LRA Sbjct: 301 EAERERNPRSRSARLRA 317 >gi|315026965|gb|EFT38897.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX2137] Length = 322 Score = 166 bits (421), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 107/316 (33%), Positives = 171/316 (54%), Gaps = 19/316 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VLL++ + L P V +D T G G+S ++ A D+D A++ + Sbjct: 11 HYTVLLKETVDGLQVKPDGVYVDCTLGGAGHSEYLLTQLNEHGHLYAFDQDQKALAHAKT 70 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++ Y K Q + ++ F +++ + + GV DG+++DLGVSS Q+D +RGFS+ + Sbjct: 71 RLQKYVDKGQVTFIKSNFRNIKEELAEHGVFHVDGILYDLGVSSPQLDEAERGFSYHQDA 130 Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM ++A +V N + +L +I GEEK + +IA I + R+ P +TT + Sbjct: 131 PLDMRMDQDAPLTAREVGNTYSYSELVKIFFRYGEEKFSKQIAREIERVREKQPIETTGE 190 Query: 191 LSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I+ + ++ HPA R FQA+RI VN+E+ + + L A L G + V++ Sbjct: 191 LVEIIKTAIPAPARRKGGHPAKRIFQAIRIAVNDELGAVEESLEQAIDLLAKNGRISVIT 250 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPS-NAHPAVFQS----ITKKVVVPTQEDVAFNR 304 FHSLEDR+VK F S V+ + P P FQ IT+K ++P+ +++ N Sbjct: 251 FHSLEDRIVKTMFKEYS----TVQDLPPGIPVVPEEFQPELKVITRKPILPSDSELSENN 306 Query: 305 RSRSAKLRAGMRTVER 320 RSRSAKLR + R Sbjct: 307 RSRSAKLRIAEKIKSR 322 >gi|84999750|ref|XP_954596.1| s-adenosyl-methyltransferase [Theileria annulata] gi|65305594|emb|CAI73919.1| s-adenosyl-methyltransferase, putative [Theileria annulata] Length = 389 Score = 166 bits (421), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 108/323 (33%), Positives = 174/323 (53%), Gaps = 39/323 (12%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 +H+PVLL++ + L P + LD T G GG++ + +I++DRDP +V + Sbjct: 72 EHIPVLLKESMEYLITDPKGLYLDVTLGYGGHTEEILRRINPNGRLISIDRDPESVYFNR 131 Query: 76 ETMRDYKE--QFSLFQATFSQLQDYV-----PDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 ++ Y + + S+ FS + D + P++G G++ DLG+S+ Q++ RGFS+ Sbjct: 132 NRLKTYIDDSRLSVELGKFSGIIDLLKSLKLPNEGYTGIIADLGLSTHQLENSIRGFSYM 191 Query: 129 KSGPLDMRMSC----------------SGISASDVVNQANVKDLTRILGILGEEKQASRI 172 K+GPLDMRMS S +A +VN+++ L +I G+E +A+ I Sbjct: 192 KNGPLDMRMSSPLNDPFNPNFKIDVKSSENTAYQLVNKSDESTLRKIFKEFGQEPRAASI 251 Query: 173 AHAIV-KRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQG 231 A IV KRR TT L S++ ++ +++ +R FQALRI VN+E+ EL+ Sbjct: 252 AKKIVEKRRILGEIDTTDKLKSVVMDSLPMFHRSKMRTLSRIFQALRIKVNDELNELSSF 311 Query: 232 LRSAEKALKAGGLLIVVSFHSLEDRLVKKFFAS-RSGKVMAVRHMIPSNAHPAVFQSITK 290 L LK G + +++H+LEDRLVK F + R+ K V+ F +TK Sbjct: 312 LNMIPHLLKYNGRFVCITYHALEDRLVKNSFINLRNLKTSTVK-----------FNILTK 360 Query: 291 KVVVPTQEDVAFNRRSRSAKLRA 313 K ++PT+E+V N +SR+AKLR Sbjct: 361 KCILPTREEVESNIKSRTAKLRC 383 >gi|324991745|gb|EGC23677.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus sanguinis SK353] Length = 316 Score = 166 bits (420), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 105/309 (33%), Positives = 174/309 (56%), Gaps = 14/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76 H+ VLL + + L P + +DAT G G+S S + ++ A D+D A+ ++ Sbjct: 7 HITVLLHETVDQLAVKPDGIYVDATLGGAGHSEYLLSQLRDEGHLYAFDQDQTAIDNAKK 66 Query: 77 TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y E+ + + F L+ + + GV DG+ +DLGVSS Q+D +RGFS+++ Sbjct: 67 RLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQRERGFSYKQDA 126 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ + ++A +VVN + +DL RI GE+K + +IA I + R P +TT + Sbjct: 127 PLDMRMNREAALTAFEVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQARSIKPIETTTE 186 Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ +I K+ +K + HPA + FQA+RI VN+E+ + ++ A L G + V+ Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDLLAVDGRIAVI 245 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F S V IP P + + +++K ++P++E++ N R+ Sbjct: 246 TFHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKL-ELVSRKPILPSKEELESNNRAH 304 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 305 SAKLRVARK 313 >gi|313617974|gb|EFR90135.1| S-adenosyl-methyltransferase MraW [Listeria innocua FSL S4-378] Length = 274 Score = 166 bits (420), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 94/260 (36%), Positives = 157/260 (60%), Gaps = 8/260 (3%) Query: 60 NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSM 116 ++ A D+D A+ + + +Y ++ + ++ F +++ + ++G VDG+++DLGVSS Sbjct: 9 HLFAFDQDQTAIDNAKIKLAEYSDRVTFIKSNFRYMKEALNERGIEAVDGILYDLGVSSP 68 Query: 117 QIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175 Q+D +RGFS+ + LDMRM ++A VVN+ + +DL RI GEEK + +IA Sbjct: 69 QLDERERGFSYHQDAALDMRMDQEQELTAKKVVNEWSYQDLIRIFFQYGEEKFSKQIARE 128 Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234 I +RR+ P +TT +L +I+ + ++ HP R+FQA+RI VN+E+ + L + Sbjct: 129 IERRREVKPIETTGELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEN 188 Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKV 292 A LK GG + V++FHSLEDR+ K F A++ + +IP P F+ T+K Sbjct: 189 ALTLLKPGGRISVITFHSLEDRITKHLFQEATKGPDLPPGLPVIPDEYKPD-FKLATRKP 247 Query: 293 VVPTQEDVAFNRRSRSAKLR 312 +VP++E++ N R+RSAKLR Sbjct: 248 IVPSEEELEQNNRARSAKLR 267 >gi|260886497|ref|ZP_05897760.1| S-adenosyl-methyltransferase MraW [Selenomonas sputigena ATCC 35185] gi|330839659|ref|YP_004414239.1| S-adenosyl-methyltransferase MraW [Selenomonas sputigena ATCC 35185] gi|260863640|gb|EEX78140.1| S-adenosyl-methyltransferase MraW [Selenomonas sputigena ATCC 35185] gi|329747423|gb|AEC00780.1| S-adenosyl-methyltransferase MraW [Selenomonas sputigena ATCC 35185] Length = 311 Score = 166 bits (420), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 111/307 (36%), Positives = 160/307 (52%), Gaps = 19/307 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H V+ E+ +A L P +D T G G++R +I LD+D A+ +E Sbjct: 5 HTSVMPEETLAALAVKPAGTYIDCTLGGAGHARRIADRLSPAGRLIGLDQDEAAIRAAKE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + + + ++ F L + GV DGV+FDLGVSS QID +RGFS+ + PL Sbjct: 65 RLANVSCRVDVVRSNFRALDSVLQSLGVTSVDGVLFDLGVSSHQIDTAERGFSYMQDAPL 124 Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S + SA +VVN+ + +L I GEE+ A RIA IV RQ P +TT +L Sbjct: 125 DMRMDTSRLLSAHEVVNEYDEAELWHIFRDYGEERWAKRIAEFIVAARQEKPIETTGELV 184 Query: 193 SLIQKTVY--FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 ++ + V + HPA R FQA+RI VN+E+ L + +A AL GG + V++F Sbjct: 185 DIVCRAVPKGVRRAAGGHPAKRIFQAIRIEVNDELGILQASVENAVHALAPGGRIAVLTF 244 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK-----KVVVPTQEDVAFNRR 305 HSLEDR+VK+ K +A + P V K K P+ + A N R Sbjct: 245 HSLEDRIVKQAL-----KELARGCICPPGLPVCVCGHEPKVRLLGKAQKPSAAEAAENPR 299 Query: 306 SRSAKLR 312 ++SAKLR Sbjct: 300 AKSAKLR 306 >gi|319900359|ref|YP_004160087.1| S-adenosyl-methyltransferase MraW [Bacteroides helcogenes P 36-108] gi|319415390|gb|ADV42501.1| S-adenosyl-methyltransferase MraW [Bacteroides helcogenes P 36-108] Length = 306 Score = 166 bits (420), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 109/308 (35%), Positives = 166/308 (53%), Gaps = 17/308 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPFAVSCGQE 76 H+PVLL + +N P +D TFG GG+SR K G ++ D+D + Sbjct: 8 HIPVLLMPSVDGMNIRPDGTYVDVTFGGGGHSREILTRLKDGGRLLGFDQDE---DAERN 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + D F+ ++ F L +++ G VD ++ DLGVSS D RGFSF+ G L Sbjct: 65 IVND--PHFTFVRSNFRYLHNFLRYHGIGQVDAILADLGVSSHHFDDSQRGFSFRFDGEL 122 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +G +A+DVVN + + L I + GE K + ++A I K R + T + Sbjct: 123 DMRMNKRAGTTAADVVNNCSEEHLADIFYLYGELKNSRKLASVIAKARAAQKITTIGEFL 182 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ F + + FQALRI VN+E+E L + L +A +ALK GG L+V+++HS Sbjct: 183 DIIKPL--FGREREKKELAKVFQALRIEVNHEMEALKEMLYAATEALKPGGRLVVITYHS 240 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK + + + A + + P F+ + KV+VP + ++ N RSRSAKLR Sbjct: 241 LEDRMVKNIMKTGNVEGKAEKDFFGNVQTP--FRLVNNKVIVPDEAEIERNPRSRSAKLR 298 Query: 313 AGMRTVER 320 + VER Sbjct: 299 IAEK-VER 305 >gi|195941340|ref|ZP_03086722.1| hypothetical protein Bbur8_00460 [Borrelia burgdorferi 80a] gi|224533199|ref|ZP_03673799.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi WI91-23] gi|224511926|gb|EEF82327.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi WI91-23] gi|312148089|gb|ADQ30748.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi JD1] Length = 296 Score = 166 bits (420), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 100/302 (33%), Positives = 171/302 (56%), Gaps = 24/302 (7%) Query: 20 HVPVLLEKVIALLNPAPGK---VILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 H PVLL+ + L+ P K + +D+T G G ++++ + +++ ++RDP + Sbjct: 7 HFPVLLDAICKLIEDLPVKSDLIYIDSTLGEGVHAKAILEKYDFLSLVGIERDPQILERA 66 Query: 75 QETMRDYKEQFSLFQATFSQL-QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ + ++E+ + F F +Y + + ++ DLG+S +GFSF + PL Sbjct: 67 RQFLSIFEERITYFNDWFDNFFVNYPLNVKANFILVDLGISMFHYKGSKKGFSFLEDEPL 126 Query: 134 DMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 DMR+ S ISA+++VN + DL ++ L E + RI+ AIV+ R+ +TT++L Sbjct: 127 DMRLCSSSCKISAAEIVNTYSKYDLEALIYDLSNEHYSRRISKAIVEYRKIKKIETTKEL 186 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 S+I K FSK +I+PAT++FQALRI+VN+E+ L + L + L G+L +++FH Sbjct: 187 QSIISKVYPFSKV-KINPATKTFQALRIYVNDELTRLKRSLPFWVENLAKDGILAIITFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 S+EDR+VK FF S S + A I+KK ++P+ +++ N+ SRSAKL Sbjct: 246 SIEDRIVKDFFRSLSCDLYA---------------KISKKPIMPSFDEIKKNKPSRSAKL 290 Query: 312 RA 313 R Sbjct: 291 RV 292 >gi|154250452|ref|YP_001411277.1| S-adenosyl-methyltransferase MraW [Fervidobacterium nodosum Rt17-B1] gi|263447049|sp|A7HNY7|RSMH_FERNB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|154154388|gb|ABS61620.1| S-adenosyl-methyltransferase MraW [Fervidobacterium nodosum Rt17-B1] Length = 294 Score = 166 bits (420), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 110/308 (35%), Positives = 165/308 (53%), Gaps = 32/308 (10%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK----MGSNVIALDRDPFAVSCGQ 75 H+PVLL +V+ L P V +D T G GG++R+ + G VI +D D + + Sbjct: 9 HIPVLLNEVVENLIWKPDGVYVDCTVGEGGHTRAIAERVLPYGGRVIGIDVDSEVLQIAE 68 Query: 76 ETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + Y LF+ ++ +L + VDG++ DLGVS+ Q+ RGFSF + P Sbjct: 69 HNLLSYP-NVQLFKFSYVELPVLLSLLQVHKVDGLLVDLGVSTYQLKAEGRGFSFNQDEP 127 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ + ++A +VN + L I+ GEE + RIA AIV+ R P QTT+ L Sbjct: 128 LDMRMNLENNLTAYHIVNTYPEEKLADIIYNYGEENFSRRIARAIVQNR---PIQTTRQL 184 Query: 192 SSLIQKTVYFSK--NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 +I++ + + + N + H AT++FQA+RI VN EIE +++ L A L +GG L ++S Sbjct: 185 VEVIKRALPYKEVHNRKRHFATKTFQAIRIEVNKEIENISKFLEFAPDYLNSGGRLAIIS 244 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDR+VK F + + + P + PT +VA N R+RSA Sbjct: 245 FHSLEDRIVKHVFKND-------KRLKP-----------IGDFISPTTFEVAENPRARSA 286 Query: 310 KLRAGMRT 317 KLR R Sbjct: 287 KLRLAERV 294 >gi|227543126|ref|ZP_03973175.1| S-adenosyl-methyltransferase MraW [Corynebacterium glucuronolyticum ATCC 51866] gi|227181114|gb|EEI62086.1| S-adenosyl-methyltransferase MraW [Corynebacterium glucuronolyticum ATCC 51866] Length = 354 Score = 166 bits (420), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 107/321 (33%), Positives = 171/321 (53%), Gaps = 24/321 (7%) Query: 20 HVPVLLEKVIALL------NPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAV 71 HVPVL ++++ LL + A G + +D T GAGG++ N VI +DRD A+ Sbjct: 31 HVPVLRDRMVELLRRGIAVDGATG-IAVDGTLGAGGHTEHLLATDPNARVIGVDRDAQAL 89 Query: 72 SCGQETMRDYKEQFSLFQATFSQL------------QDYVPDKGVDGVVFDLGVSSMQID 119 + + ++F F + Q+ D G+ G +FDLGVSSMQ+D Sbjct: 90 KDATARLAPFGDRFVGLNVRFDEWMEAASCSSHPLCQEAAAD-GISGALFDLGVSSMQLD 148 Query: 120 CGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178 +RGF+++ PLDMRM S GI+A+DV+N + DL R+L GEEK A +IA A+++ Sbjct: 149 QEERGFAYKIDAPLDMRMDPSRGITAADVLNTYSHGDLARVLKTYGEEKFAGKIASAVIR 208 Query: 179 RRQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 R+ PF + L L+ T+ ++ + HPA R+FQALR+ VN E+ L Q + Sbjct: 209 EREKEPFTRSGRLVELLYDTIPAPARRHGGHPAKRTFQALRVEVNQELRALEQVIPVTAD 268 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297 AL GG+++ +S+ SLED++VKK A + + F +T+ ++ Sbjct: 269 ALHVGGVMVFMSYQSLEDKIVKKALARLTTSTNPPGLPVDLPGTEPHFALVTRGSEKASK 328 Query: 298 EDVAFNRRSRSAKLRAGMRTV 318 +++ N R+ S ++RA R + Sbjct: 329 KEIDQNPRAASVRVRAAQRVL 349 >gi|239636344|ref|ZP_04677346.1| S-adenosyl-methyltransferase MraW [Staphylococcus warneri L37603] gi|239597699|gb|EEQ80194.1| S-adenosyl-methyltransferase MraW [Staphylococcus warneri L37603] Length = 311 Score = 166 bits (420), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 103/304 (33%), Positives = 165/304 (54%), Gaps = 13/304 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+ V+L + I LN V +D T G G++ S+ +IA+D+D A+ ++ Sbjct: 4 HISVMLNETIDYLNIKEDGVYVDCTLGGAGHALYLLNQLSDEGRLIAIDQDLTAIENAKD 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++++ + + + F +L + + + VDG+ +DLGVSS Q+D +RGFS+ L Sbjct: 64 VLKEHLHKVTFIHSNFRELTQILNELNIEKVDGIYYDLGVSSPQLDVPERGFSYHHDAKL 123 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM +SA +VVN+ + L +I GEEK + +IA I R+ P +TT +L Sbjct: 124 DMRMDQTQSLSAYEVVNEWPYEALVKIFYRYGEEKFSKQIARRIEANREKQPIETTLELV 183 Query: 193 SLIQKTVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I++ + +K R HPA R FQA+RI VN+E+ + A + +K G + V++F Sbjct: 184 EVIKEGIP-AKARRKGGHPAKRVFQAIRIAVNDELSAFEDSIEQAIELVKVNGRISVITF 242 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 HSLEDRL K+ F R + IP P + + + +K + T ED+ N R+RS Sbjct: 243 HSLEDRLCKQMFQEYEKGPDVPRGLPVIPEAYTPKL-KRVNRKPITATDEDLDDNNRARS 301 Query: 309 AKLR 312 AKLR Sbjct: 302 AKLR 305 >gi|154500741|ref|ZP_02038779.1| hypothetical protein BACCAP_04419 [Bacteroides capillosus ATCC 29799] gi|150270630|gb|EDM97939.1| hypothetical protein BACCAP_04419 [Bacteroides capillosus ATCC 29799] Length = 313 Score = 166 bits (420), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 115/301 (38%), Positives = 167/301 (55%), Gaps = 8/301 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77 H PVLL++ I LN P +DAT G G+SR + +I +DRD A+ Sbjct: 8 HKPVLLQECIDGLNIDPTGTYVDATLGRAGHSREIARRLTTGRLICIDRDQAALDAAPGR 67 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + ++ +L F L D + +D GV+ DLGVSS Q+D RGFS+ PLD Sbjct: 68 LEGLMDRVTLVHGNFGDLADILDRLKLDKLSGVLADLGVSSPQLDDASRGFSYMADAPLD 127 Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM S ++A VVN+ +++ RIL GEE+ A IA AIV+ R+ AP +TT +L Sbjct: 128 MRMDQSEALTARTVVNEWPQEEIRRILFQFGEERYAPAIAAAIVRAREKAPIETTLELVD 187 Query: 194 LIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ + + + HPA RSFQA+RI VN+E+ + +++A AL GG L ++SFHS Sbjct: 188 IIRSAMPAHALCEKQHPAKRSFQAIRIAVNDELSAADKLIQAAVPALAPGGRLAIISFHS 247 Query: 253 LEDRLVKKFFAS-RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK FA+ G + V + + KK +V +E++ N R+RSAKL Sbjct: 248 LEDRIVKNAFAAFAKGCTCPPDFPVCVCGKKPVIRLVNKKPIVSGEEELNENARARSAKL 307 Query: 312 R 312 R Sbjct: 308 R 308 >gi|216264839|ref|ZP_03436831.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi 156a] gi|218249331|ref|YP_002374829.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi ZS7] gi|221217744|ref|ZP_03589212.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi 72a] gi|224533715|ref|ZP_03674303.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi CA-11.2a] gi|225550125|ref|ZP_03771085.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi 118a] gi|226321624|ref|ZP_03797150.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi Bol26] gi|226709919|sp|B7J1N4|RSMH_BORBZ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|215981312|gb|EEC22119.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi 156a] gi|218164519|gb|ACK74580.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi ZS7] gi|221192421|gb|EEE18640.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi 72a] gi|224513008|gb|EEF83371.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi CA-11.2a] gi|225369237|gb|EEG98690.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi 118a] gi|226232813|gb|EEH31566.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi Bol26] Length = 296 Score = 166 bits (420), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 100/302 (33%), Positives = 171/302 (56%), Gaps = 24/302 (7%) Query: 20 HVPVLLEKVIALLNPAPGK---VILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 H PVLL+ + L+ P K + +D+T G G ++++ + +++ ++RDP + Sbjct: 7 HFPVLLDAICKLIEDLPVKSDLIYIDSTLGEGVHAKAILEKYDFLSLVGIERDPQILERA 66 Query: 75 QETMRDYKEQFSLFQATFSQL-QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ + ++E+ + F F +Y + + ++ DLG+S +GFSF + PL Sbjct: 67 RQFLSIFEERITYFNDWFDNFFVNYPLNVKANFILVDLGISMFHYKGSKKGFSFLEDEPL 126 Query: 134 DMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 DMR+ S ISA+++VN + DL ++ L E + RI+ AIV+ R+ +TT++L Sbjct: 127 DMRLCSSSCKISAAEIVNTYSKYDLEALIYDLSNEHYSRRISKAIVEYRKIKKIETTKEL 186 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 S+I K FSK +I+PAT++FQALRI+VN+E+ L + L + L G+L +++FH Sbjct: 187 QSIISKVYPFSKV-KINPATKTFQALRIYVNDELARLKRSLPFWVENLAKDGILAIITFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 S+EDR+VK FF S S + A I+KK ++P+ +++ N+ SRSAKL Sbjct: 246 SIEDRIVKDFFRSLSCDLYA---------------KISKKPIMPSFDEIKKNKPSRSAKL 290 Query: 312 RA 313 R Sbjct: 291 RV 292 >gi|224082310|ref|XP_002306643.1| predicted protein [Populus trichocarpa] gi|222856092|gb|EEE93639.1| predicted protein [Populus trichocarpa] Length = 435 Score = 166 bits (420), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 117/347 (33%), Positives = 169/347 (48%), Gaps = 53/347 (15%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAV 71 H HVPV+L +V+ + + P + +D T GA G+S + K + I +D DP A Sbjct: 87 HETESHVPVMLGEVVDVFSSLPLRSFIDCTLGAAGHSSAIIKGHPELECYIGMDVDPVAH 146 Query: 72 SCG--------QETMRDYK-----EQFSLFQATFSQLQD--YVPDKGVDGVVFDLGVSSM 116 + Q T K + F ++ ++ D + GVDG++ DLG+SSM Sbjct: 147 AKARAHIDALLQSTRSSLKPHLLFKNFKYIKSVVGEIDDDCKLLSSGVDGILMDLGMSSM 206 Query: 117 QIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175 Q++ RGFS +GPLDMRM + + A D++N ++ RIL GEE + Sbjct: 207 QVNNPQRGFSVLANGPLDMRMDPRASVKAKDILNYWPDDEVGRILREYGEESNWRWLQKK 266 Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYFSKNNR---IHPATRSFQALRIFVNNEIEELAQGL 232 IV+ RQ +T +L LIQ + +K R I ATR FQALRI VN+E+ L + L Sbjct: 267 IVQARQQGGLHSTSELRDLIQGATHGTKGGRQGWIKTATRVFQALRIAVNDELNTLEKSL 326 Query: 233 RSAEKALKAGGLLIVVSFHSLEDRLVKKFF----ASRSG--------------------- 267 + + L GG L V+SFHSLEDR+VK+ F S G Sbjct: 327 HACFECLVPGGRLAVISFHSLEDRIVKQTFLKIIESNGGDGDVVEEEAGKRDLRKMRNDI 386 Query: 268 --KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 K +R M+ +TK+ + P++E+ NRRSRSAKLR Sbjct: 387 DAKETWIRQMVQGQNGTI----LTKRPITPSEEEERLNRRSRSAKLR 429 >gi|319957176|ref|YP_004168439.1| s-adenosyl-methyltransferase mraw [Nitratifractor salsuginis DSM 16511] gi|319419580|gb|ADV46690.1| S-adenosyl-methyltransferase MraW [Nitratifractor salsuginis DSM 16511] Length = 319 Score = 166 bits (420), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 111/302 (36%), Positives = 174/302 (57%), Gaps = 13/302 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 H+PVLL +V+ + V++D T G G+S + + + I +DRDP A+ + Sbjct: 14 HIPVLLPEVMESFSSLDEGVLIDCTLGYAGHSSALLEAHPKLKLIGIDRDPEALEFSAQR 73 Query: 78 MRDYKEQFSLFQATFSQ-LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + Y+++ L +FS+ L + + V G++ D GVSS+Q+D +RGFSF LDMR Sbjct: 74 LAPYRDRVRLEHGSFSERLPSLIDQEPVVGILADFGVSSLQLDKKERGFSFASEN-LDMR 132 Query: 137 MSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M+ + A DVVN ++ L + GE + A +A AIVK R +AP + Q+L+ L Sbjct: 133 MNPEAPLRAYDVVNGYPLERLEYLFREYGEIRPAGALAAAIVKARANAPISSAQELAEL- 191 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 KTV K + HPAT+ FQA+RI VN+E+ E+ + L + E AG ++ +++FHSLED Sbjct: 192 AKTVLRGKG-KTHPATQMFQAIRIEVNDELGEIERLLDTLEAKRPAGAIVSLITFHSLED 250 Query: 256 RLVKKFFASRSGKVM----AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 RLVK F + S K + A+R N A+ + +++K ++E++ N RSRSAKL Sbjct: 251 RLVKNRFRAWSQKCICPPEAIRCTCGGNH--ALGEMLSRKPRSASKEELRSNPRSRSAKL 308 Query: 312 RA 313 R+ Sbjct: 309 RS 310 >gi|237720371|ref|ZP_04550852.1| S-adenosyl-methyltransferase mraW [Bacteroides sp. 2_2_4] gi|229450122|gb|EEO55913.1| S-adenosyl-methyltransferase mraW [Bacteroides sp. 2_2_4] Length = 304 Score = 166 bits (420), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 107/300 (35%), Positives = 163/300 (54%), Gaps = 16/300 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HVPVLL++ + +N P +D TFG G+SR G ++ D+D + Sbjct: 9 HVPVLLKESVDGMNIQPDGTYVDVTFGGAGHSREILSRLGEGGRLLGFDQDE---DAERN 65 Query: 77 TMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + D F ++ F LQ+ Y + VD ++ DLGVSS D +RGFSF+ G L Sbjct: 66 IVND--PHFIFVRSNFRYLQNFLRYHDIEQVDAILADLGVSSHHFDDSERGFSFRFDGAL 123 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +GI+A+D+VN + L +L + GE K + ++A IVK R +T + Sbjct: 124 DMRMNKRAGITAADIVNTYEEERLANLLYLYGELKNSRKLASVIVKARSGQNIRTIGEFL 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ F + + FQALRI VN E+E L + L++A +ALK GG L+V+++HS Sbjct: 184 EIIKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLQAATEALKPGGRLVVITYHS 241 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK + + + A + P F+ + KV+VP + ++ N RSRSAKLR Sbjct: 242 LEDRMVKNIMKTGNVEGKAESDFFGNLQTP--FRLVNNKVIVPDEAEIERNPRSRSAKLR 299 >gi|15594651|ref|NP_212440.1| hypothetical protein BB0306 [Borrelia burgdorferi B31] gi|8134806|sp|O51286|RSMH_BORBU RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|2688161|gb|AAC66643.1| conserved hypothetical protein [Borrelia burgdorferi B31] gi|312149012|gb|ADQ29083.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi N40] Length = 296 Score = 166 bits (420), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 100/302 (33%), Positives = 171/302 (56%), Gaps = 24/302 (7%) Query: 20 HVPVLLEKVIALLNPAPGK---VILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 H PVLL+ + L+ P K + +D+T G G ++++ + +++ ++RDP + Sbjct: 7 HFPVLLDAICKLIEDLPVKSDLIYIDSTLGEGVHAKAILEKYDFLSLVGIERDPQILERA 66 Query: 75 QETMRDYKEQFSLFQATFSQL-QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ + ++E+ + F F +Y + + ++ DLG+S +GFSF + PL Sbjct: 67 RQFLSIFEERITYFNDWFDNFFVNYPLNVKANFILVDLGISMFHYKGSKKGFSFLEDEPL 126 Query: 134 DMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 DMR+ S ISA+++VN + DL ++ L E + RI+ AIV+ R+ +TT++L Sbjct: 127 DMRLCSSSCKISAAEIVNTYSKYDLEALIYDLSNEHYSRRISKAIVEYRKIKKIETTKEL 186 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 S+I K FSK +I+PAT++FQALRI+VN+E+ L + L + L G+L +++FH Sbjct: 187 QSIISKVYPFSKV-KINPATKTFQALRIYVNDELARLKRSLPFWVENLAKDGILAIITFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 S+EDR+VK FF S S + A I+KK ++P+ +++ N+ SRSAKL Sbjct: 246 SIEDRIVKDFFRSLSCDLYA---------------KISKKPIMPSFDEIKKNKPSRSAKL 290 Query: 312 RA 313 R Sbjct: 291 RV 292 >gi|254518688|ref|ZP_05130744.1| S-adenosyl-methyltransferase MraW [Clostridium sp. 7_2_43FAA] gi|226912437|gb|EEH97638.1| S-adenosyl-methyltransferase MraW [Clostridium sp. 7_2_43FAA] Length = 310 Score = 166 bits (419), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 111/302 (36%), Positives = 171/302 (56%), Gaps = 10/302 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 HV VLL + I LN + +D T G GG+S K S +I +D+D A+ E Sbjct: 5 HVSVLLNECIEGLNIKEDGIYVDGTLGGGGHSLEILKRLSKDGTLIGVDQDKDALKAAGE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++D+ + F + + + K +DG++ DLGVSS Q+D GDRGFS+ + PL Sbjct: 65 RLQDFA-NVKFVHSNFYNIDSVLNNLEIKKIDGMLMDLGVSSYQLDEGDRGFSYMQDAPL 123 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ S +SA +V+N+ +++ RI+ GEEK A RIA IV+ R++ P +TT +L Sbjct: 124 DMRMNRESSLSAYEVINEYEEEEIYRIIRDYGEEKFAKRIARFIVENRENKPIETTLELV 183 Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + ++ HPA R+FQA+RI VN+E+ L + + L GG + +++FH Sbjct: 184 EIIKAAIPAKARREGPHPAKRTFQAIRIEVNSELSILNKAIEDGVNRLNKGGRMAIITFH 243 Query: 252 SLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK F + + I A + I++K + P++E+V N RSRSAK Sbjct: 244 SLEDRIVKLKFKELATSCTCPKEFPICVCGGKAKVKLISRKAIEPSKEEVEENPRSRSAK 303 Query: 311 LR 312 LR Sbjct: 304 LR 305 >gi|226320608|ref|ZP_03796168.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi 29805] gi|226234027|gb|EEH32748.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi 29805] Length = 296 Score = 166 bits (419), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 100/302 (33%), Positives = 171/302 (56%), Gaps = 24/302 (7%) Query: 20 HVPVLLEKVIALLNPAPGK---VILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 H PVLL+ + L+ P K + +D+T G G ++++ + +++ ++RDP + Sbjct: 7 HFPVLLDAICKLIEDLPVKSDLIYIDSTLGEGVHAKAILEKYDFLSLVGIERDPQILERA 66 Query: 75 QETMRDYKEQFSLFQATFSQL-QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ + ++E+ + F F +Y + + ++ DLG+S +GFSF + PL Sbjct: 67 RQFLSIFEERITYFNDWFDNFFVNYPLNVKANFILVDLGISMFHYKGSKKGFSFLEDEPL 126 Query: 134 DMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 DMR+ S ISA+++VN + DL ++ L E + RI+ AIV+ R+ +TT++L Sbjct: 127 DMRLCSSSCKISAAEIVNTYSKYDLEALIYDLSNEYYSRRISKAIVEYRKIKKIETTKEL 186 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 S+I K FSK +I+PAT++FQALRI+VN+E+ L + L + L G+L +++FH Sbjct: 187 QSIISKVYPFSKV-KINPATKTFQALRIYVNDELARLKRSLPFWVENLAKDGILAIITFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 S+EDR+VK FF S S + A I+KK ++P+ +++ N+ SRSAKL Sbjct: 246 SIEDRIVKDFFRSLSCDLYA---------------KISKKPIMPSFDEIKKNKPSRSAKL 290 Query: 312 RA 313 R Sbjct: 291 RV 292 >gi|167764163|ref|ZP_02436290.1| hypothetical protein BACSTE_02547 [Bacteroides stercoris ATCC 43183] gi|167698279|gb|EDS14858.1| hypothetical protein BACSTE_02547 [Bacteroides stercoris ATCC 43183] Length = 303 Score = 166 bits (419), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 106/300 (35%), Positives = 162/300 (54%), Gaps = 16/300 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H+PVLL + +N P +D TFG GG+SR G ++ D+D + Sbjct: 8 HIPVLLMPSVDGMNIRPDGTYVDVTFGGGGHSREILSRLGDGGRLLGFDQDE---DAERN 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + D F+ ++ F L +++ G VD V+ DLGVSS D +RGFSF+ G L Sbjct: 65 IVND--PHFTFVRSNFRYLHNFLRYHGIEQVDAVLADLGVSSHHFDDSERGFSFRFDGAL 122 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +G++A+D+VN + + L I + GE K + ++A IVK R T + Sbjct: 123 DMRMNKRAGLTAADIVNTYDEERLADIFYLYGELKNSRKLASVIVKARAVQKIGTIGEFL 182 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ F + + FQALRI VN E+E L + L +A +ALK GG L+V+++HS Sbjct: 183 EIIKPL--FGREREKKELAKVFQALRIEVNREMEALKEMLYAATEALKPGGRLVVITYHS 240 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK + + + A + + P F+ + KV+VP +++ N RSRSAKLR Sbjct: 241 LEDRMVKNIMKTGNIEGKAEKDFFGNVQTP--FRLVNNKVIVPDNDEIERNPRSRSAKLR 298 >gi|283783556|ref|YP_003374310.1| S-adenosyl-methyltransferase MraW [Gardnerella vaginalis 409-05] gi|298252636|ref|ZP_06976430.1| S-adenosylmethionine-dependent methyltransferase [Gardnerella vaginalis 5-1] gi|283442079|gb|ADB14545.1| S-adenosyl-methyltransferase MraW [Gardnerella vaginalis 409-05] gi|297533000|gb|EFH71884.1| S-adenosylmethionine-dependent methyltransferase [Gardnerella vaginalis 5-1] Length = 345 Score = 166 bits (419), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 108/317 (34%), Positives = 174/317 (54%), Gaps = 13/317 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMG--SNVIA 63 M+ A+ H PVLL+ + L+ P+ G +++D T G G++ +F K + +I Sbjct: 1 MTDAMKDITAIHAPVLLQDCVDLVTPSLQHKGAIVVDCTLGLAGHATAFLKAAPFATLIG 60 Query: 64 LDRDPFAVSCGQETMRD--YKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQI 118 +DRD A+S + MR + +F A F ++ + + + +D + DLG+SS+QI Sbjct: 61 IDRDSEALSLATQRMRSEGLENRFIPAHAAFDEIDEVLQENSIDRIDAAFMDLGLSSLQI 120 Query: 119 DCGDRGFSFQKSGPLDMRMSCSGISASDVVNQA-NVKDLTRILGILGEEKQASRIAHAIV 177 D DRGFS+ LDMRM + + + + + ++LTRI GEE+ AS IA IV Sbjct: 121 DETDRGFSYSHDTALDMRMDTTQATTAATILATYDSRELTRIFREYGEERFASPIARRIV 180 Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 + R + P T+ L SL+ + + +PA R FQALRI VN E+++L++ L Sbjct: 181 EVRATEPIATSGQLVSLVDSVIPKAHRATGNPAKRVFQALRIEVNGELDKLSRTLPKIAL 240 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFF-ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296 L+ G L+V S+HSLED VK+F + V A +IP +A P F+++T+ + + Sbjct: 241 HLREHGRLVVESYHSLEDTAVKRFMNQGLTVDVPANMPVIPDDAQP-FFKALTRGAMKAS 299 Query: 297 QEDVAFNRRSRSAKLRA 313 +E++ N RS S +LRA Sbjct: 300 KEEIVHNTRSSSVRLRA 316 >gi|255536597|ref|YP_003096968.1| S-adenosyl-methyltransferase mraW [Flavobacteriaceae bacterium 3519-10] gi|255342793|gb|ACU08906.1| S-adenosyl-methyltransferase mraW [Flavobacteriaceae bacterium 3519-10] Length = 297 Score = 166 bits (419), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 106/304 (34%), Positives = 165/304 (54%), Gaps = 17/304 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H PVLL + + L P + +D TFG GG+S + + S+ + + D+D + + Sbjct: 3 HNPVLLTRSVDDLVTNPDGIYVDVTFGGGGHSAAILRKLSSKGRLFSFDQD---LDALKN 59 Query: 77 TMRDYKEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 T+ D ++F+L F L++ + KGVDGV+ DLGVSS Q D +RGFS + PL Sbjct: 60 TIED--DRFTLINQNFRFLENSLMVYGIKGVDGVLADLGVSSHQFDAAERGFSTRSDAPL 117 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ + A V+N+ + L I GE ++A ++A IV R+ P +TT+DL Sbjct: 118 DMRMNVLQPLDAKKVINEYEEEQLADIFYYYGELREARKLAREIVHHRKLKPIETTEDLK 177 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 L F +N + FQA+RI VN E+E L + L + LK G L+V+S+HS Sbjct: 178 KLFSYIPQFKQNKFF---AQVFQAVRIEVNQELEVLKEMLVQSYNILKPNGRLVVISYHS 234 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDRLVK++ + + R + + F+ + K V+P ++ N R+RSAK+R Sbjct: 235 LEDRLVKRYLKNGMFEGEPARDIYGN--FQKTFELLQTKAVIPDATEIEENSRARSAKMR 292 Query: 313 AGMR 316 G++ Sbjct: 293 VGIK 296 >gi|223043777|ref|ZP_03613820.1| S-adenosyl-methyltransferase MraW [Staphylococcus capitis SK14] gi|222442874|gb|EEE48976.1| S-adenosyl-methyltransferase MraW [Staphylococcus capitis SK14] Length = 311 Score = 166 bits (419), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 101/305 (33%), Positives = 164/305 (53%), Gaps = 11/305 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 HV V+L + I LN V +D T G G++ ++ +IA+D+D A+ + Sbjct: 4 HVSVMLNETIDYLNIKEDGVYVDCTLGGAGHALYLLNQLNDEGRLIAIDQDLTALENAKV 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++++ + + F +L + + D + VDG+ +DLGVSS Q+D +RGFS+ L Sbjct: 64 VLKEHLHKVTFVHNNFRELTNILKDLNIEKVDGIYYDLGVSSPQLDVPERGFSYHHDAKL 123 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM +SA +VVN+ + + L +I GEEK + +IA I R+ P +TT L Sbjct: 124 DMRMDQTQSLSAYEVVNEWSYEALVKIFYRYGEEKFSKQIARRIEANREQHPIETTLQLV 183 Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I++ + ++ HPA R FQA+RI VN+E+ + A +++ G + V++FH Sbjct: 184 DIIKEGIPAKARRKGGHPAKRVFQAIRIAVNDELSAFEDSIEQAIESVNVNGRISVITFH 243 Query: 252 SLEDRLVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDRL K+ F R +IP P + + + +K + T+ED+ N R+RSA Sbjct: 244 SLEDRLCKQIFQEYEKGPEVPRGIPIIPEGYSPKL-KRVNRKPITATEEDLDENNRARSA 302 Query: 310 KLRAG 314 KLR Sbjct: 303 KLRVA 307 >gi|291320327|ref|YP_003515589.1| S adenosyl methyltransferase [Mycoplasma agalactiae] gi|290752660|emb|CBH40633.1| S adenosyl methyltransferase [Mycoplasma agalactiae] Length = 300 Score = 166 bits (419), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 107/306 (34%), Positives = 164/306 (53%), Gaps = 17/306 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H+P+LL + I LN + LD T G GG+S K N ++ D+D FA+ ++ Sbjct: 5 HIPILLNEAIESLNIKSNGIYLDLTVGMGGHSSEILKRLKNGLLVGFDKDLFAIEESRKR 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + F L + F+ + D + VDG++ DLG+SS Q+D +RGFS+ K LD Sbjct: 65 LSKIGSNFQLIHSDFNNVADELAKLNISAVDGILVDLGISSPQVDNAERGFSYSKDARLD 124 Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM+ + + A VVN + +L I E K A ++A+AI+K+R P TT +L+ Sbjct: 125 MRMNTNQALDAHFVVNNYSEDELITIFYNYAEVKLAKQVANAIIKKR---PINTTLELAE 181 Query: 194 LIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I K+ Y +K + +P FQA+RI VNNE + L A LK L +++FHS Sbjct: 182 VI-KSAYPAKLLSLKNPCKAVFQAIRIEVNNEFSSINSMLVQALNLLKKDSSLAIITFHS 240 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LED ++KKFF G ++ +H PS + KV P++ +++ N RSRSAKLR Sbjct: 241 LEDSIIKKFF----GNLIKSKH--PSKMPINEEKKYIVKVYSPSKAEISENNRSRSAKLR 294 Query: 313 AGMRTV 318 + + Sbjct: 295 VLTKLI 300 >gi|291547133|emb|CBL20241.1| S-adenosyl-methyltransferase MraW [Ruminococcus sp. SR1/5] Length = 311 Score = 166 bits (419), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 104/302 (34%), Positives = 162/302 (53%), Gaps = 10/302 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H VLL + I L P + +D T G G++ CK S I +D+D A+ E Sbjct: 5 HKSVLLNETIDGLRVKPDGIYVDGTLGGAGHATEVCKKLSAKGRFIGIDQDQDAIIAASE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + Q ++ ++ + + D + +G VDG++ DLGVSS Q+D +RGFS++ PL Sbjct: 65 RLSAFN-QVTIIRSNYCYMADELRSRGIEKVDGILLDLGVSSYQLDNEERGFSYRYDSPL 123 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM +A D+VN ++L RI+ GE+K A IA IV R+ AP +TT +L+ Sbjct: 124 DMRMDRRQSRTAGDIVNGYEERELYRIIRDYGEDKFAKNIAKHIVAAREQAPIRTTGELT 183 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + + HPA R+FQA+RI +N E++ L L L GG + +++FH Sbjct: 184 EIIRGAIPMKIQATGGHPAKRTFQAIRIELNRELDVLRDSLDGMIDLLDDGGRICIITFH 243 Query: 252 SLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK F + + + IT+K ++P +E++ N RS+SAK Sbjct: 244 SLEDRIVKTIFRKNENPCTCPPDFPVCVCGKKSKGKVITRKPILPGKEEMEENPRSKSAK 303 Query: 311 LR 312 LR Sbjct: 304 LR 305 >gi|320527513|ref|ZP_08028693.1| S-adenosyl-methyltransferase MraW [Solobacterium moorei F0204] gi|320132070|gb|EFW24620.1| S-adenosyl-methyltransferase MraW [Solobacterium moorei F0204] Length = 311 Score = 166 bits (419), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 114/304 (37%), Positives = 165/304 (54%), Gaps = 13/304 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGS-NVIALDRDPFAVSCGQET 77 H VLL++ + LN + +D T G GG+S K+ S ++ A D+D A++ E Sbjct: 3 HTSVLLKETVDSLNVKEDGIYVDGTLGRGGHSGYLISKLKSGHLYAFDKDSQAIAESTEN 62 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++D ++ F +++ + +G V+G++ DLGVSS Q D RGFS++ LD Sbjct: 63 LKDVLPYITMIHNDFRSMKEELAKRGIYEVNGIMMDLGVSSPQFDDPTRGFSYRYDARLD 122 Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM+ + A VVN + ++L RIL GEEK IA AI K+R P +TT L Sbjct: 123 MRMNQEQELDAYQVVNTYSFEELCRILREYGEEKFTKSIARAIEKQRAIQPIETTFQLVD 182 Query: 194 LIQKTVYFSK--NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I K+ K + HPA ++FQALRI VN+E+ L +GL A LK G +++FH Sbjct: 183 VI-KSALPDKVLRQKGHPAKQTFQALRIEVNDELGALQKGLEEALSILKPNGRCAIITFH 241 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP---SNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SLEDR+VK F S + IP S+ A + ITKK + T E++ N RS S Sbjct: 242 SLEDRMVKNVFKEYSS-APYIDPRIPIKASDIKQADYNLITKKPITATDEELDENHRSHS 300 Query: 309 AKLR 312 AKLR Sbjct: 301 AKLR 304 >gi|167745322|ref|ZP_02417449.1| hypothetical protein ANACAC_00013 [Anaerostipes caccae DSM 14662] gi|167655043|gb|EDR99172.1| hypothetical protein ANACAC_00013 [Anaerostipes caccae DSM 14662] Length = 311 Score = 166 bits (419), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 102/307 (33%), Positives = 167/307 (54%), Gaps = 9/307 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 +H VLL++ I L P + +D T G GG++ S I +D+D A+ Sbjct: 4 EHASVLLDETIRELKIKPDGIYVDGTLGGGGHAFHVLNRLSEKGRYIGIDQDEDAIRAST 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + ++++ ++ + + + + D G VDG++ DLGVSS Q+D DRGF++++ P Sbjct: 64 KRLAPFQDKVTIVRDNYVNMPKVLKDLGISRVDGILLDLGVSSFQLDEKDRGFTYREDVP 123 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM SA D+VN + ++L I+ GE+K A IA I R+ AP +TT L Sbjct: 124 LDMRMDQRQTFSARDIVNGYSEQELFHIIRDYGEDKFAKNIAKHIAAEREKAPIETTGQL 183 Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+ + + HPA R+FQA+RI N E+E L L + L G L +++F Sbjct: 184 IEVIKHAIPMKVRAVGGHPAKRTFQAIRIECNRELEVLKTSLDQMIELLNPEGRLCIITF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK+ F + I + + + + IT+K ++PT+E++ N+R++S+ Sbjct: 244 HSLEDRIVKRAFRKNENPCTCPPNFPICTCGNESKGKVITRKPIIPTEEELMRNKRAKSS 303 Query: 310 KLRAGMR 316 KLR R Sbjct: 304 KLRVFER 310 >gi|332522739|ref|ZP_08398991.1| S-adenosyl-methyltransferase MraW [Streptococcus porcinus str. Jelinkova 176] gi|332314003|gb|EGJ26988.1| S-adenosyl-methyltransferase MraW [Streptococcus porcinus str. Jelinkova 176] Length = 316 Score = 166 bits (419), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 108/311 (34%), Positives = 173/311 (55%), Gaps = 18/311 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76 H+ VLL + + +L P + +DAT G G+S S ++ D+D A+ Q Sbjct: 7 HITVLLHETVDMLRVKPDGIYVDATLGGAGHSAYLLSQLNEHGHLYCFDQDQKAIDNAQI 66 Query: 77 TMRDYKEQ--FSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + E+ + + F L+ + GVD G+++DLGVSS Q+D +RGFS+++ Sbjct: 67 FLAPFIEKGMVTFIKDNFRHLKSQMQAHGVDSIDGILYDLGVSSPQLDERERGFSYRQDA 126 Query: 132 PLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S + ++A VVN + DL RI GE++ + +IA I + R P +TT + Sbjct: 127 PLDMRMDSDASLTAYHVVNDYSFNDLVRIFFRYGEDRFSKQIARKIEQARAIKPIETTTE 186 Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ LI K+ +K + HPA + FQA+RI VN+E+ + L+ A L G + V+ Sbjct: 187 LAELI-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAAEESLQQAMDLLAVEGHISVI 245 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH---MIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 +FHSLEDRL K+ F + V+ V IP P F+ +++K ++P++E++A N R Sbjct: 246 TFHSLEDRLTKQLF--KEASVVDVPKGIPFIPEEMQPK-FELVSRKPILPSKEELAENNR 302 Query: 306 SRSAKLRAGMR 316 + SAKLR + Sbjct: 303 AHSAKLRVARK 313 >gi|37522496|ref|NP_925873.1| hypothetical protein glr2927 [Gloeobacter violaceus PCC 7421] gi|42559444|sp|Q7NCQ1|RSMH_GLOVI RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|35213497|dbj|BAC90868.1| glr2927 [Gloeobacter violaceus PCC 7421] Length = 314 Score = 166 bits (419), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 100/243 (41%), Positives = 143/243 (58%), Gaps = 10/243 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETM 78 H VLLE+ I L PG + LDAT G GG+S + + S V+ALD+D A++ + + Sbjct: 30 HRSVLLEETIVGLQVHPGGLYLDATVGLGGHSEAILRTESTRVVALDQDEDALAQARLRL 89 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138 + E+ F++ + ++ DG+V DLGVSSMQ+D +RGFS++ PLDMRM Sbjct: 90 APFGERVRFEHINFAEFEPG--EERFDGIVADLGVSSMQLDSPERGFSWRFESPLDMRMD 147 Query: 139 CSGI--SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 G +A+D+VN + + L+ + GEE+ + RIA IV+RR P +TT +L++++ Sbjct: 148 GGGEAETAADLVNTCSAEQLSDLFWRYGEERFSRRIARRIVERR---PLRTTTELAAVVA 204 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 + IHPATR FQALRI VN E+ L L + L GG L V+SFHSLEDR Sbjct: 205 SAI--PTRQPIHPATRVFQALRIAVNGEVAALETFLERSPDWLVPGGRLAVISFHSLEDR 262 Query: 257 LVK 259 VK Sbjct: 263 PVK 265 >gi|311114349|ref|YP_003985570.1| S-adenosyl-methyltransferase MraW [Gardnerella vaginalis ATCC 14019] gi|310945843|gb|ADP38547.1| S-adenosyl-methyltransferase MraW [Gardnerella vaginalis ATCC 14019] Length = 358 Score = 165 bits (418), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 107/306 (34%), Positives = 168/306 (54%), Gaps = 13/306 (4%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74 H PVLL+ + L++PA V++D T G G++ +F K + ++ +DRD A+ Sbjct: 13 HAPVLLDDCVNLVSPALNHKNSVVVDCTLGLAGHATAFLKSAPLATLVGIDRDGEALELA 72 Query: 75 QETMRD--YKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQK 129 + MR+ E+F A F ++ + D + D DLG+SS+QID DRGFS+ Sbjct: 73 IKRMREEGLDERFIPVHAAFDEVDKVLEDLAIYHIDAAFMDLGLSSLQIDEEDRGFSYSH 132 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 + LDMRM + I+A+ ++ + L I G+E+ + IA IV+ R+ P T+ Sbjct: 133 NTALDMRMDTTQSITAATILATYDSHKLANIFREYGQERFSGPIARKIVQVREETPITTS 192 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L L+ + S +PA R FQALRI VN E+++LA+ L L GG ++V Sbjct: 193 GQLVELVDNVIPRSHRAPGNPAKRVFQALRIEVNGELDKLARTLPKLALRLNQGGRIVVE 252 Query: 249 SFHSLEDRLVKKFFAS-RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 S+HSLED VK+F + V A ++P++A P F+S+T+ V ++E++A N RS Sbjct: 253 SYHSLEDIAVKRFMNNGLEVDVPANMPIVPADAQP-FFRSLTRGAVKASKEEIANNTRSS 311 Query: 308 SAKLRA 313 S +LRA Sbjct: 312 SVRLRA 317 >gi|168023286|ref|XP_001764169.1| predicted protein [Physcomitrella patens subsp. patens] gi|162684609|gb|EDQ71010.1| predicted protein [Physcomitrella patens subsp. patens] Length = 329 Score = 165 bits (418), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 114/323 (35%), Positives = 165/323 (51%), Gaps = 30/323 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCGQ- 75 HV VLL +V+A +D T GA G++ + + + I D DP A S + Sbjct: 3 HVAVLLNEVLAKFRDRRILSFVDCTLGAAGHASAILREHPELESFIGFDVDPVAHSEAKP 62 Query: 76 --ETMRDYKEQFSLFQATFSQLQDYVP-------DKGVDGVVFDLGVSSMQIDCGDRGFS 126 + M Q L F ++ V +GV+G++ DLG+SSMQ+D +RGFS Sbjct: 63 RLQAMASSDVQLHLVLTNFRNIKKAVNGADAKLVHEGVNGILMDLGMSSMQVDMAERGFS 122 Query: 127 FQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 F K GP DMRM S ++A +++N+ ++ RIL GEEK+ +A IV +R + Sbjct: 123 FMKDGPADMRMDPSASLTAEEILNKWPEAEVARILRDYGEEKRWKHLARKIVDKRLAGGI 182 Query: 186 QTTQDLSSLIQKTVYF--SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 +T +L +I + K +HPATR+FQALRI VN+E+ L L A L G Sbjct: 183 HSTSELVKVIGGNTFGRPGKGKAVHPATRTFQALRIAVNDELRTLETALADAFDLLAPKG 242 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQ-------------SIT 289 L V+SFHSLEDR+VK+FF +G AV + + S F +T Sbjct: 243 RLAVISFHSLEDRIVKRFFLKAAGIGQAVEDNEMGSEPQGDDFSLRDKNVLEGSIGVVLT 302 Query: 290 KKVVVPTQEDVAFNRRSRSAKLR 312 K+ +V +++ N RSRSAKLR Sbjct: 303 KRPIVAEADEINTNPRSRSAKLR 325 >gi|313890654|ref|ZP_07824281.1| S-adenosyl-methyltransferase MraW [Streptococcus pseudoporcinus SPIN 20026] gi|313120965|gb|EFR44077.1| S-adenosyl-methyltransferase MraW [Streptococcus pseudoporcinus SPIN 20026] Length = 316 Score = 165 bits (418), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 106/311 (34%), Positives = 172/311 (55%), Gaps = 18/311 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H+ VLL + + +L P + +DAT G G+S ++ D+D A+ Q Sbjct: 7 HITVLLHETVDMLQVKPDGIYVDATLGGAGHSAYLLSQLNEHGHLYCFDQDQKAIDNAQV 66 Query: 77 TMRDYKEQ--FSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + E+ + + F L+ + GVD G+++DLGVSS Q+D +RGFS+++ Sbjct: 67 FLAPFIEKGMVTFIKDNFRHLKSQMQAHGVDFIDGILYDLGVSSPQLDERERGFSYRQDA 126 Query: 132 PLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S + ++A VVN + DL RI GE++ + ++A I + R P +TT + Sbjct: 127 PLDMRMDSDASLTAYQVVNDYSFNDLVRIFFRYGEDRFSKQVARKIEQARAIKPIETTAE 186 Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ LI K+ +K + HPA + FQA+RI VN+E+ + L+ A L G + V+ Sbjct: 187 LAELI-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAAEESLQQAMDVLALEGRISVI 245 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH---MIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 +FHSLEDRL K+ F + V+ V IP P F+ +++K ++P++E++A N R Sbjct: 246 TFHSLEDRLTKQLF--KEASVVDVPKGLPFIPEEMQPK-FELVSRKPILPSKEELAENNR 302 Query: 306 SRSAKLRAGMR 316 + SAKLR + Sbjct: 303 AHSAKLRVAKK 313 >gi|255348632|ref|ZP_05380639.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis 70] gi|255503172|ref|ZP_05381562.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis 70s] gi|255506850|ref|ZP_05382489.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis D(s)2923] gi|289525311|emb|CBJ14787.1| S-adenosyl-L-methionine-dependent methyltransferase [Chlamydia trachomatis Sweden2] gi|296434861|gb|ADH17039.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis E/150] gi|296438581|gb|ADH20734.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis E/11023] Length = 300 Score = 165 bits (418), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 112/311 (36%), Positives = 165/311 (53%), Gaps = 24/311 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALD---RDPFAVSCGQE 76 H+PVL+++ ++L V D T GAGG++ +F ++ D RD A++ + Sbjct: 7 HIPVLVKESLSLFRDRNPVVFCDVTVGAGGHAEAFLTEFPSIERYDGSDRDLSALALSEN 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ-KSGPLDM 135 + +K++ L A+F ++ D DGV+ DLGVSSMQ++ +RGFSFQ + PLDM Sbjct: 67 RLLPFKDRVRLRHASFEEVDTLTSDGTYDGVLADLGVSSMQLNNLERGFSFQGEDHPLDM 126 Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM S G++AS+V+N +++ I GEE A A+V R+ T +DL Sbjct: 127 RMDTSRGMTASEVLNSLREEEIGEIFRNYGEESLWRSAAAAVVHFRKKKKILTVKDLKDA 186 Query: 195 IQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 + +IHP T FQALRI+VN E +L L SA + L+ GG L V+SF SL Sbjct: 187 TSGVFPSYRLRKKIHPLTLIFQALRIYVNQEGAQLKVLLDSAFRWLRPGGRLAVISFCSL 246 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 +DR VK F + + + +TKKV++P+ E+ N RSRSAKLR Sbjct: 247 DDRPVKWAFREAEARGLG--------------KILTKKVIMPSYEETRMNPRSRSAKLRC 292 Query: 314 GMRTVERSIED 324 E+S ED Sbjct: 293 ----FEKSFED 299 >gi|228472692|ref|ZP_04057452.1| S-adenosyl-methyltransferase MraW [Capnocytophaga gingivalis ATCC 33624] gi|228276105|gb|EEK14861.1| S-adenosyl-methyltransferase MraW [Capnocytophaga gingivalis ATCC 33624] Length = 305 Score = 165 bits (418), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 115/309 (37%), Positives = 172/309 (55%), Gaps = 23/309 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H+PVLL++ I L+ P +D TFG GG+SR+ + S + A D+DP A + Sbjct: 7 HIPVLLQECIEGLSIDPAGTYVDVTFGGGGHSRAILERLSPQGRLFAFDQDPQAQA---N 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + D ++F+L F ++ ++ GV GV+ D GVSS Q D +RGFS + G L Sbjct: 64 AIAD--DRFTLIGQNFRHIKRFLRFYGVKEVSGVLGDFGVSSHQFDTAERGFSIRMEGEL 121 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +SA +VVN + ++L+ I GE Q+ ++A AIV+RR++AP TT DL Sbjct: 122 DMRMNPEQPLSAKEVVNGYSQEELSEIFFRYGELSQSRKLAQAIVQRRETAPIATTADLK 181 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++QK YF KN + +QA+RI VN E+ L + L +K G + ++S+HS Sbjct: 182 EVVQK--YFPKNQENKHLAQLYQAIRIEVNQELSALEELLLQLPDIVKPMGRIALISYHS 239 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV---VVPTQEDVAFNRRSRSA 309 LEDRL+K+F R G+ P Q +KV ++PT E++A N R+RSA Sbjct: 240 LEDRLIKRFI--RDGQFSGE----PEKDFYGNIQVPFRKVGKPILPTAEEIARNNRARSA 293 Query: 310 KLRAGMRTV 318 KLR R + Sbjct: 294 KLRVAERVL 302 >gi|314933355|ref|ZP_07840720.1| S-adenosyl-methyltransferase MraW [Staphylococcus caprae C87] gi|313653505|gb|EFS17262.1| S-adenosyl-methyltransferase MraW [Staphylococcus caprae C87] Length = 311 Score = 165 bits (418), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 101/305 (33%), Positives = 165/305 (54%), Gaps = 11/305 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 HV V+L + I LN V +D T G G++ ++ +IA+D+D A+ + Sbjct: 4 HVSVMLNETIDYLNIKEDGVYVDCTLGGAGHALYLLNQLNDEGRLIAIDQDLTALENAKV 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++++ + + + F +L + + D + VDG+ +DLGVSS Q+D +RGFS+ L Sbjct: 64 VLKEHLHKVTFVHSNFRELTNILKDLNIEKVDGIYYDLGVSSPQLDVPERGFSYHHDAKL 123 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM +SA +VVN+ + + L +I GEEK + +IA I R+ P +TT L Sbjct: 124 DMRMDQTQSLSAFEVVNEWSYEALVKIFYRYGEEKFSKQIARRIEANREQHPIETTLQLV 183 Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I++ + ++ HPA R FQA+RI VN+E+ + A +++ G + V++FH Sbjct: 184 DVIKEGIPAKARRKGGHPAKRVFQAIRIAVNDELSAFEDSIEQAIESVNINGRISVITFH 243 Query: 252 SLEDRLVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDRL K+ F R +IP P + + + +K + T+ED+ N R+RSA Sbjct: 244 SLEDRLCKQIFQEYEKGPEVPRGIPIIPEGYSPKL-KRVNRKPITATEEDLDENNRARSA 302 Query: 310 KLRAG 314 KLR Sbjct: 303 KLRVA 307 >gi|87161763|ref|YP_493770.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194885|ref|YP_499685.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus NCTC 8325] gi|253731798|ref|ZP_04865963.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|87127737|gb|ABD22251.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202443|gb|ABD30253.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus NCTC 8325] gi|253724469|gb|EES93198.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|298694470|gb|ADI97692.1| S-adenosyl-methyltransferase [Staphylococcus aureus subsp. aureus ED133] gi|302751002|gb|ADL65179.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus str. JKD6008] gi|320141006|gb|EFW32853.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus MRSA131] gi|320143062|gb|EFW34852.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus MRSA177] Length = 304 Score = 165 bits (418), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 100/301 (33%), Positives = 161/301 (53%), Gaps = 11/301 (3%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETMRD 80 +L + I LN V +D T G G++ ++ +IA+D+D A+ +E ++D Sbjct: 1 MLNETIDYLNVKENGVYIDCTLGGAGHALYLLNQLNDDGRLIAIDQDQTAIDNAKEVLKD 60 Query: 81 YKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 + + + + F +L + D + VDG+ +DLGVSS Q+D +RGFS+ LDMRM Sbjct: 61 HLHKVTFVHSNFRELTQILKDLNIEKVDGIYYDLGVSSPQLDIPERGFSYHHDATLDMRM 120 Query: 138 S-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 ++A ++VN + + L +I GEEK + +IA I R+ P TT +L +I+ Sbjct: 121 DQTQELTAYEIVNNWSYEALVKIFYRYGEEKFSKQIARRIEAHREQQPITTTLELVDIIK 180 Query: 197 KTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + + ++ HPA R FQALRI VN+E+ + A + +K G + V++FHSLED Sbjct: 181 EGIPAKARRKGGHPAKRVFQALRIAVNDELSAFEDSIEQAIELVKVDGRISVITFHSLED 240 Query: 256 RLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 RL K+ F R + IP A+ + + +K + T+ED+ N R+RSAKLR Sbjct: 241 RLCKQVFQEYEKGPEVPRGLPVIPE-AYTPKLKRVNRKPITATEEDLDDNNRARSAKLRV 299 Query: 314 G 314 Sbjct: 300 A 300 >gi|76788170|ref|YP_329009.1| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae A909] gi|161485617|ref|NP_687320.2| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae 2603V/R] gi|30173046|sp|Q8E1R8|RSMH_STRA5 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|88909222|sp|Q3K394|RSMH_STRA1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|76563227|gb|ABA45811.1| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae A909] Length = 315 Score = 165 bits (418), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 104/308 (33%), Positives = 170/308 (55%), Gaps = 12/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQE 76 H+ VLL + + +L+ P + +DAT G G+S ++G + + A D+D A+ Sbjct: 7 HITVLLHETVDMLDIKPDGIYVDATLGGAGHSEYLLSQLGPDGHLYAFDQDQKAIDNAHI 66 Query: 77 TMRDYKE--QFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++ Y + Q + + F L + GV +G+ +DLGVSS Q+D +RGFS+++ Sbjct: 67 RLKKYVDTGQVTFIKDNFRNLSSNLKALGVSEINGICYDLGVSSPQLDERERGFSYKQDA 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ ++A DVVN + DL RI GE+K + +IA I + R TT + Sbjct: 127 PLDMRMNREQSLTAYDVVNTYSYHDLVRIFFKYGEDKFSKQIARKIEQVRAEKTISTTTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+ + + + HPA + FQA+RI VN+E+ + ++ A L G + V++ Sbjct: 187 LAEIIKSSKSAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDLLAVDGRISVIT 246 Query: 250 FHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDRL K+ F S +V IP + P + + + +K ++P+QE++ N R+ S Sbjct: 247 FHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLQPKM-ELVNRKPILPSQEELEANNRAHS 305 Query: 309 AKLRAGMR 316 AKLR R Sbjct: 306 AKLRVARR 313 >gi|308235562|ref|ZP_07666299.1| S-adenosyl-methyltransferase MraW [Gardnerella vaginalis ATCC 14018] Length = 353 Score = 165 bits (418), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 107/306 (34%), Positives = 168/306 (54%), Gaps = 13/306 (4%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74 H PVLL+ + L++PA V++D T G G++ +F K + ++ +DRD A+ Sbjct: 8 HAPVLLDDCVNLVSPALNHKNSVVVDCTLGLAGHATAFLKSAPLATLVGIDRDGEALELA 67 Query: 75 QETMRD--YKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQK 129 + MR+ E+F A F ++ + D + D DLG+SS+QID DRGFS+ Sbjct: 68 IKRMREEGLDERFIPVHAAFDEVDKVLEDLAIYHIDAAFMDLGLSSLQIDEEDRGFSYSH 127 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 + LDMRM + I+A+ ++ + L I G+E+ + IA IV+ R+ P T+ Sbjct: 128 NTALDMRMDTTQSITAATILATYDSHKLANIFREYGQERFSGPIARKIVQVREETPITTS 187 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L L+ + S +PA R FQALRI VN E+++LA+ L L GG ++V Sbjct: 188 GQLVELVDNVIPRSHRAPGNPAKRVFQALRIEVNGELDKLARTLPKLALRLNQGGRIVVE 247 Query: 249 SFHSLEDRLVKKFFAS-RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 S+HSLED VK+F + V A ++P++A P F+S+T+ V ++E++A N RS Sbjct: 248 SYHSLEDIAVKRFMNNGLEVDVPANMPIVPADAQP-FFRSLTRGAVKASKEEIANNTRSS 306 Query: 308 SAKLRA 313 S +LRA Sbjct: 307 SVRLRA 312 >gi|150021597|ref|YP_001306951.1| S-adenosyl-methyltransferase MraW [Thermosipho melanesiensis BI429] gi|262825837|sp|A6LNR5|RSMH_THEM4 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|149794118|gb|ABR31566.1| S-adenosyl-methyltransferase MraW [Thermosipho melanesiensis BI429] Length = 291 Score = 165 bits (417), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 109/305 (35%), Positives = 169/305 (55%), Gaps = 30/305 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77 H+PVL +V+ L + +D T G GG++ K S VIA+D D + Q+ Sbjct: 8 HIPVLPNEVVEYLLWKDNGIYVDCTAGEGGHTFLIAKKCPNSRVIAIDVDLEVLEIAQKN 67 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++ + L +A++ L + G++ G++ DLG+S+ Q+ RGFSF + PLD Sbjct: 68 LKAF-HNVILLKASYVDLPVVLKSLGIERVSGILADLGISTYQLKAEGRGFSFNRDEPLD 126 Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM SA + N + + L++I+ GEE+ A RIA IVK R P TT++L Sbjct: 127 MRMDIQQDTSAHKITNFYSEEKLSKIIFKYGEERFARRIAKQIVKNR---PINTTKELVE 183 Query: 194 LIQKTVYFS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+K + S + + H AT++FQA+RI VN E++ + Q L++AE+ L+ GG L ++SFH Sbjct: 184 IIKKALPPSEIRKRKRHFATKTFQAIRIEVNKELKNIEQLLKNAEELLEIGGRLAIISFH 243 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+VK F + + ++H+ A P + PTQE+ N R+RSAKL Sbjct: 244 SLEDRIVKHFIKNSNN----LKHI----AGP----------IKPTQEETKNNPRARSAKL 285 Query: 312 RAGMR 316 R R Sbjct: 286 RVAER 290 >gi|15835162|ref|NP_296921.1| S-adenosyl-methyltransferase MraW [Chlamydia muridarum Nigg] gi|270285334|ref|ZP_06194728.1| S-adenosyl-methyltransferase MraW [Chlamydia muridarum Nigg] gi|270289350|ref|ZP_06195652.1| S-adenosyl-methyltransferase MraW [Chlamydia muridarum Weiss] gi|301336731|ref|ZP_07224933.1| S-adenosyl-methyltransferase MraW [Chlamydia muridarum MopnTet14] gi|20139249|sp|Q9PKC2|RSMH_CHLMU RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|7190584|gb|AAF39384.1| conserved hypothetical protein [Chlamydia muridarum Nigg] Length = 302 Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 114/314 (36%), Positives = 167/314 (53%), Gaps = 28/314 (8%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALD---RDPFAVSCGQE 76 H+PVL+++ ++L D T GAGG++ +F ++ D RD A++ ++ Sbjct: 7 HIPVLVKESLSLFQDQHPTTFCDVTVGAGGHAEAFLTSFPSIEHYDGSDRDLSALALSEK 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ-KSGPLDM 135 + +K + L A+F ++ PD DGV+ DLGVSSMQ+ +RGFSFQ + PLDM Sbjct: 67 RLLPFKGRVCLRHASFDEVNALTPDGMYDGVLADLGVSSMQLTDLERGFSFQGEDHPLDM 126 Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM S GI+AS+V+N +++ I GEE A+A+V R+ T +DL Sbjct: 127 RMDTSRGITASEVLNSLREEEIGEIFRKYGEEPLWRSAANAVVHFRKKKKILTVKDLKDA 186 Query: 195 IQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 + +IHP T FQALRI+VN E +L L SA + L+ GG L ++SF SL Sbjct: 187 TSGVFPSYRLRKKIHPLTLIFQALRIYVNQEGAQLKVLLDSALRWLRPGGRLAIISFCSL 246 Query: 254 EDRLVKKFF----ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 +DR VK F A G+V+ TKKV++PT E+ N RSRSA Sbjct: 247 DDRPVKWAFREAEARGEGRVL------------------TKKVIMPTYEETRKNPRSRSA 288 Query: 310 KLRAGMRTVERSIE 323 KLR ++++ S E Sbjct: 289 KLRCFEKSLKISDE 302 >gi|119358493|ref|YP_913137.1| S-adenosyl-methyltransferase MraW [Chlorobium phaeobacteroides DSM 266] gi|263446010|sp|A1BJY6|RSMH_CHLPD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|119355842|gb|ABL66713.1| S-adenosyl-methyltransferase MraW [Chlorobium phaeobacteroides DSM 266] Length = 329 Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 107/311 (34%), Positives = 163/311 (52%), Gaps = 19/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--------GSNVIALDRDPFAV 71 H PVL +V L PG + +D T G GG++ + + S +I +D+D A+ Sbjct: 7 HEPVLAAQVTDFLVLRPG-IYIDGTLGGGGHALAIMRALETAGFEKNSLLIGIDQDDEAL 65 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYV----PDKGV----DGVVFDLGVSSMQIDCGDR 123 T+ YKE L + FS ++ + +G+ G++ DLGVSS QID R Sbjct: 66 HAASTTLSWYKETTVLVKGNFSDVRSILGKVCKQRGLVSRAAGILLDLGVSSSQIDTAGR 125 Query: 124 GFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GFS+ + GPLDMRM CS +A+D+VN + K+L + GEE ++ IA IV R+ Sbjct: 126 GFSYLQKGPLDMRMDRCSSTTAADIVNTLDEKELAGLFFRYGEEPRSRMIARHIVNYREQ 185 Query: 183 APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 T ++ + I + + +I +R FQALRI VN E+E L Q L L Sbjct: 186 TGAVTGTEVLAAIIRNAERDPHKQIKTLSRVFQALRIEVNQELEVLKQALSDGVDCLDYH 245 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVA 301 G + V+S+HSLEDR+VK FF +S + + + H V +T+K ++ ++++ Sbjct: 246 GRMAVISYHSLEDRIVKSFFVEKSKSDWGPKGVGMREPLHKGVLGLVTRKPLIADEKEIQ 305 Query: 302 FNRRSRSAKLR 312 N R+RSAKLR Sbjct: 306 ENPRARSAKLR 316 >gi|331002506|ref|ZP_08326024.1| ribosomal RNA small subunit methyltransferase H 2 [Lachnospiraceae oral taxon 107 str. F0167] gi|330410322|gb|EGG89756.1| ribosomal RNA small subunit methyltransferase H 2 [Lachnospiraceae oral taxon 107 str. F0167] Length = 311 Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 102/303 (33%), Positives = 170/303 (56%), Gaps = 8/303 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQE 76 +H VLL++VI LN +D T G GG++ K +I +D+D A++ + Sbjct: 4 NHKSVLLDEVIESLNIKADGYYVDGTLGGGGHALEVVKRLKTGKLIGIDQDMDAINAATQ 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + DY + + + + +++ + + VDG+ DLGVSS Q+D +RGF+++ PL Sbjct: 64 RLIDYSKSVIIIRDNYVNIENILKKENIEKVDGIYIDLGVSSYQLDNAERGFTYRFDAPL 123 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + + ASD+VN+ + +L I+ GE++ A IA IV+ R +TT +L Sbjct: 124 DMRMDDRNELKASDIVNEYSESELFHIIRDYGEDRFAKNIAKHIVEYRNKKRIETTFELV 183 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ ++ + HPA R+FQA+RI +N E+E L + LK GG L V++FH Sbjct: 184 DIIKASIPMKIQVTGGHPAKRTFQAIRIELNKELEVLTDSINVMIDLLKPGGRLSVITFH 243 Query: 252 SLEDRLVKKFF-ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK+ F + S V + + + + + IT+K ++P +E++ N R++SAK Sbjct: 244 SLEDRIVKQAFKKAESPCVCPKKFPVCVCGNKSKGRVITRKAILPGEEELEENSRAKSAK 303 Query: 311 LRA 313 LR Sbjct: 304 LRV 306 >gi|15604993|ref|NP_219777.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis D/UW-3/CX] gi|76788994|ref|YP_328080.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis A/HAR-13] gi|237804617|ref|YP_002888771.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis B/TZ1A828/OT] gi|255311073|ref|ZP_05353643.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis 6276] gi|255317374|ref|ZP_05358620.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis 6276s] gi|20138894|sp|O84274|RSMH_CHLTR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|88909193|sp|Q3KM90|RSMH_CHLTA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|3328685|gb|AAC67865.1| PBP2B Family methyltransferase [Chlamydia trachomatis D/UW-3/CX] gi|76167524|gb|AAX50532.1| MraW [Chlamydia trachomatis A/HAR-13] gi|231272917|emb|CAX09828.1| S-adenosyl-L-methionine-dependent methyltransferase [Chlamydia trachomatis B/TZ1A828/OT] gi|296435788|gb|ADH17962.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis G/9768] gi|296436713|gb|ADH18883.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis G/11222] gi|296437648|gb|ADH19809.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis G/11074] gi|297140147|gb|ADH96905.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis G/9301] gi|297748402|gb|ADI50948.1| MraW [Chlamydia trachomatis D-EC] gi|297749282|gb|ADI51960.1| MraW [Chlamydia trachomatis D-LC] Length = 300 Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 112/311 (36%), Positives = 165/311 (53%), Gaps = 24/311 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALD---RDPFAVSCGQE 76 H+PVL+++ ++L V D T GAGG++ +F ++ D RD A++ + Sbjct: 7 HIPVLVKESLSLFRDRNPVVFCDVTVGAGGHAEAFLTEFPSIERYDGSDRDLSALALSEN 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ-KSGPLDM 135 + +K++ L A+F ++ D DGV+ DLGVSSMQ++ +RGFSFQ + PLDM Sbjct: 67 RLLPFKDRVRLRHASFEEVDTLTSDGTYDGVLADLGVSSMQLNNLERGFSFQGEDHPLDM 126 Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM S G++AS+V+N +++ I GEE A A+V R+ T +DL Sbjct: 127 RMDTSRGMTASEVLNSLREEEIGEIFRNYGEEPLWRSAAAAVVHFRKKKKILTVKDLKDA 186 Query: 195 IQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 + +IHP T FQALRI+VN E +L L SA + L+ GG L V+SF SL Sbjct: 187 TSGVFPSYRLRKKIHPLTLIFQALRIYVNQEGAQLKVLLDSAFRWLRPGGRLAVISFCSL 246 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 +DR VK F + + + +TKKV++P+ E+ N RSRSAKLR Sbjct: 247 DDRPVKWAFREAEARGLG--------------KILTKKVIMPSYEETRMNPRSRSAKLRC 292 Query: 314 GMRTVERSIED 324 E+S ED Sbjct: 293 ----FEKSFED 299 >gi|93007204|ref|YP_581641.1| methyltransferase [Psychrobacter cryohalolentis K5] gi|92394882|gb|ABE76157.1| methyltransferase [Psychrobacter cryohalolentis K5] Length = 383 Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 107/287 (37%), Positives = 160/287 (55%), Gaps = 15/287 (5%) Query: 39 VILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95 + +DATFG GG+SR + +I D+DP A+S +E + + + + +F+ L Sbjct: 94 IYVDATFGRGGHSRLLLSQLADDATLIVFDKDPTAISVARE-LANSDSRVKVVHDSFATL 152 Query: 96 QDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQA 151 D + VDG++ DLG+SS QID G RGFSF + G +DMRM S G S ++ + Sbjct: 153 TDSLAAMRITQVDGLMADLGISSPQIDDGSRGFSFMRDGAVDMRMDTSRGQSVAEWLETV 212 Query: 152 NVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPAT 211 + + L +L GEE+ + RIA AI +Q + +T L+ +I K + + HPAT Sbjct: 213 DDETLANVLYEFGEERHSRRIARAI---KQMDSYDSTLALAEVI-KVAHPNWQRGKHPAT 268 Query: 212 RSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRS-GKVM 270 +SFQA+RIF+NNE+ ++ L + LK GG L V+SFHSLEDR +K+F S G+ Sbjct: 269 QSFQAMRIFINNELGDVDNFLEQSIPILKVGGQLAVISFHSLEDRRIKQFLQRHSKGQYP 328 Query: 271 AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 ++ P F K V P++ +++ N RSRSA LR RT Sbjct: 329 EDENLPMPPKRPRYFSK--PKRVGPSKAEISHNPRSRSAWLRMATRT 373 >gi|237752673|ref|ZP_04583153.1| S-adenosyl-methyltransferase MraW [Helicobacter winghamensis ATCC BAA-430] gi|229376162|gb|EEO26253.1| S-adenosyl-methyltransferase MraW [Helicobacter winghamensis ATCC BAA-430] Length = 311 Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 108/306 (35%), Positives = 174/306 (56%), Gaps = 17/306 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H+PVLLE+V+ +++D T G GG++ + + N +I +D+D A++ + Sbjct: 5 HIPVLLEQVLDSFKTLKSGILIDCTLGFGGHTHALLEAYPNLEIIGIDQDSDALAFTAKR 64 Query: 78 MRDYKEQFSLFQATFSQ-----LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + E+FS + +S L + + + G++ D+GVSSMQ D +RGF F S Sbjct: 65 LSVFGERFSYKKGRYSAVVRELLSNKALQENIVGILADIGVSSMQFDNKERGFCFD-SYM 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM +SA ++VN A++ +L RI GE ++ ++A IV+ R++A F + + L Sbjct: 124 LDMRMDREQHLSAKEIVNGASLNELERIFRDFGEIREYKKLARLIVEERKNAKFTSAKHL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRS-AEKALKAGGLLIVVSF 250 S LI K K+ +IHPAT++FQALRI VN+E+ EL + L++ E LK G + V++F Sbjct: 184 SELIAKHF---KHPKIHPATQAFQALRIAVNDELGELERLLQTLGENPLKKGARVSVITF 240 Query: 251 HSLEDRLVKKFFASRSGKVMA---VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 HSLEDR+ K+ F + + I H +S+ KK + + ++ N RSR Sbjct: 241 HSLEDRITKQTFREWERDCICDCNIMRCICGGGHSKG-KSLYKKPLCADESELRENPRSR 299 Query: 308 SAKLRA 313 SAKLR+ Sbjct: 300 SAKLRS 305 >gi|223888788|ref|ZP_03623379.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi 64b] gi|223885604|gb|EEF56703.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi 64b] Length = 296 Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 99/302 (32%), Positives = 171/302 (56%), Gaps = 24/302 (7%) Query: 20 HVPVLLEKVIALLNPAPGK---VILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 H PVLL+ + L+ P K + +D+T G G ++++ + +++ ++RDP + Sbjct: 7 HFPVLLDAICKLIEDLPVKSDLIYIDSTLGEGVHAKAILEKYDFLSLVGIERDPQILERA 66 Query: 75 QETMRDYKEQFSLFQATFSQL-QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ + ++E+ + F F +Y + + ++ DLG+S +GFSF + PL Sbjct: 67 RQFLSIFEERITYFNDWFDNFFVNYPLNVKANFILVDLGISMFHYKGSKKGFSFLEDEPL 126 Query: 134 DMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 DMR+ S ISA+++VN + DL ++ L E + +I+ AIV+ R+ +TT++L Sbjct: 127 DMRLCSSSCKISAAEIVNTYSKYDLEALIYDLSNEHYSRKISKAIVEYRKIKKIETTKEL 186 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 S+I K FSK +I+PAT++FQALRI+VN+E+ L + L + L G+L +++FH Sbjct: 187 QSIISKVYPFSKV-KINPATKTFQALRIYVNDELARLKRSLPFWVENLAKDGILAIITFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 S+EDR+VK FF S S + A I+KK ++P+ +++ N+ SRSAKL Sbjct: 246 SIEDRIVKDFFRSLSCDLYA---------------KISKKPIMPSFDEIKKNKPSRSAKL 290 Query: 312 RA 313 R Sbjct: 291 RV 292 >gi|166154483|ref|YP_001654601.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis 434/Bu] gi|166155358|ref|YP_001653613.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335743|ref|ZP_07223987.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis L2tet1] gi|263446017|sp|B0B7I8|RSMH_CHLT2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446024|sp|B0BBQ3|RSMH_CHLTB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|165930471|emb|CAP03964.1| S-adenosyl-L-methionine-dependent methyltransferase [Chlamydia trachomatis 434/Bu] gi|165931346|emb|CAP06918.1| S-adenosyl-L-methionine-dependent methyltransferase [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 300 Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 112/311 (36%), Positives = 165/311 (53%), Gaps = 24/311 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALD---RDPFAVSCGQE 76 H+PVL+++ ++L V D T GAGG++ +F ++ D RD A++ + Sbjct: 7 HIPVLVKESLSLFRGRNPVVFCDVTVGAGGHAEAFLTEFPSIERYDGSDRDLSALALSEN 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ-KSGPLDM 135 + +K++ L A+F ++ D DGV+ DLGVSSMQ++ +RGFSFQ + PLDM Sbjct: 67 RLLPFKDRVRLRHASFEEVDTLTSDGTYDGVLADLGVSSMQLNNLERGFSFQGEDHPLDM 126 Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM S G++AS+V+N +++ I GEE A A+V R+ T +DL Sbjct: 127 RMDTSRGMTASEVLNSLREEEIGEIFRNYGEEPLWRSAAAAVVHFRKKKKILTVKDLKDA 186 Query: 195 IQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 + +IHP T FQALRI+VN E +L L SA + L+ GG L V+SF SL Sbjct: 187 TSGVFPSYRLRKKIHPLTLIFQALRIYVNQEGAQLKVLLDSAFRWLRPGGRLAVISFCSL 246 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 +DR VK F + + + +TKKV++P+ E+ N RSRSAKLR Sbjct: 247 DDRPVKWAFREAEARGLG--------------KILTKKVIMPSYEETRMNPRSRSAKLRC 292 Query: 314 GMRTVERSIED 324 E+S ED Sbjct: 293 ----FEKSFED 299 >gi|330686332|gb|EGG97937.1| S-adenosyl-methyltransferase MraW [Staphylococcus epidermidis VCU121] Length = 311 Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 101/303 (33%), Positives = 163/303 (53%), Gaps = 11/303 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+ V+L + I LN V +D T G G++ S+ +IA+D+D A+ ++ Sbjct: 4 HISVMLNETIDYLNIKEDGVYVDCTLGGAGHALYLLNQLSDEGRLIAIDQDLTAIENAKD 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++++ + + + F +L + + + VDG+ +DLGVSS Q+D +RGFS+ L Sbjct: 64 VLKEHLHKVTFIHSNFRELTQILNELNIEKVDGIYYDLGVSSPQLDVPERGFSYHHDAKL 123 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM +SA +VVN+ + L +I GEEK + +IA I R+ P +TT +L Sbjct: 124 DMRMDQTQSLSAYEVVNEWPYEALVKIFYRYGEEKFSKQIARRIEANREKQPIETTLELV 183 Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I++ + ++ HPA R FQA+RI VN+E+ + A +K G + V++FH Sbjct: 184 EVIKEGIPAKARRKGGHPAKRVFQAIRIAVNDELSAFEDSIEQAIGLVKVNGRISVITFH 243 Query: 252 SLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDRL K+ F R + IP P + + + +K + T ED+ N R+RSA Sbjct: 244 SLEDRLCKQMFQEYEKGPDVPRGLPVIPEAYTPKL-KRVNRKPITATDEDLDDNNRARSA 302 Query: 310 KLR 312 KLR Sbjct: 303 KLR 305 >gi|294646197|ref|ZP_06723851.1| S-adenosyl-methyltransferase MraW [Bacteroides ovatus SD CC 2a] gi|292638415|gb|EFF56779.1| S-adenosyl-methyltransferase MraW [Bacteroides ovatus SD CC 2a] Length = 309 Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 107/300 (35%), Positives = 162/300 (54%), Gaps = 16/300 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HVPVLL++ + +N P +D TFG G+SR G ++ D+D + Sbjct: 14 HVPVLLKESVDGMNIQPDGTYVDVTFGGAGHSREILSRLGEGGRLLGFDQDE---DAERN 70 Query: 77 TMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + D F ++ F LQ+ Y + VD ++ DLGVSS D +RGFSF+ G L Sbjct: 71 IVND--PHFIFVRSNFRYLQNFLRYHDIEQVDAILADLGVSSHHFDDSERGFSFRFDGAL 128 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +GI+A+D+VN + L +L + GE K + ++A IVK R +T + Sbjct: 129 DMRMNKRAGITAADIVNTYEEERLANLLYLYGELKNSRKLASVIVKARSGQYIRTIGEFL 188 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ F + + FQALRI VN E+E L + L +A +ALK GG L+V+++HS Sbjct: 189 EIIKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLLAATEALKPGGRLVVITYHS 246 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK + + + A + P F+ + KV+VP + ++ N RSRSAKLR Sbjct: 247 LEDRMVKNIMKTGNVEGKAESDFFGNLQTP--FRLVNNKVIVPDEAEIERNPRSRSAKLR 304 >gi|311103994|ref|YP_003976847.1| methyltransferase [Achromobacter xylosoxidans A8] gi|310758683|gb|ADP14132.1| S-adenosyl-methyltransferase MraW [Achromobacter xylosoxidans A8] Length = 364 Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 120/330 (36%), Positives = 180/330 (54%), Gaps = 35/330 (10%) Query: 19 DHVPVLLEKVI-ALLNP---------------------APGKVILDATFGAGGYSRSFC- 55 +H PVLLE + ALL P A V +D TFG GG+SR Sbjct: 4 EHRPVLLEPTVDALLLPDFGGKGATRSHQQAGPATATRAEDGVFVDGTFGRGGHSRELLG 63 Query: 56 KMG--SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFD 110 ++G + ++ D+DP + + ++ F+ + + + G VDGV+ D Sbjct: 64 RLGKAARLVVFDKDP-EAIAVANALAAADPRVTVVHGGFATMAEELEQLGIGKVDGVMLD 122 Query: 111 LGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQA 169 LGVSS QID +RGFSF + GPLDMRM + G + +D + QA+V ++ ++ GEE+ A Sbjct: 123 LGVSSPQIDDAERGFSFMRDGPLDMRMDTTRGPTVADWLAQASVDEMREVIADYGEERFA 182 Query: 170 SRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELA 229 ++A AI RR + P +TT +L+ + V + + HPATR+FQALRI++N E+EELA Sbjct: 183 FQVAKAIAARRATRPLRTTLELAECVASAVRTREKGQ-HPATRTFQALRIYINRELEELA 241 Query: 230 QGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQS 287 + L +A L GG L V+SFHSLEDR+VK+ A+ + A + S V +S Sbjct: 242 RTLAAALDLLAPGGRLAVISFHSLEDRMVKQCIAAAARPAAAHARLPLRESEMPQPVLRS 301 Query: 288 ITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 + + V+ ++V+ N R+RSA LR RT Sbjct: 302 LGR--VLAEDDEVSANARARSAVLRVAERT 329 >gi|225551942|ref|ZP_03772882.1| S-adenosyl-methyltransferase MraW [Borrelia sp. SV1] gi|225370940|gb|EEH00370.1| S-adenosyl-methyltransferase MraW [Borrelia sp. SV1] Length = 296 Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 99/302 (32%), Positives = 169/302 (55%), Gaps = 24/302 (7%) Query: 20 HVPVLLEKVIALLNPAPGK---VILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 H PVLL+ + L+ P K + +D+T G G ++++ + +++ ++RDP + Sbjct: 7 HFPVLLDAICKLIEDLPVKSDLIYIDSTLGEGVHAKAILEKYDFLSLVGIERDPQILERA 66 Query: 75 QETMRDYKEQFSLFQATFSQL-QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + ++E+ + F F +Y + + ++ DLG+S +GFSF + PL Sbjct: 67 KHFLSIFEERITYFNDWFDNFFVNYPLNVKANFILVDLGISMFHYKGSKKGFSFLEDEPL 126 Query: 134 DMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 DMR+ S ISAS++VN + DL ++ L E + RI+ AI++ R+ +TT++L Sbjct: 127 DMRLCSSSCKISASEIVNTFSKYDLEALIYDLSNEHYSRRISKAIIEYRKIKKIETTKEL 186 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 S+I K FSK +I+PAT++FQALRI+VN+E+ L + L + L G+L +++FH Sbjct: 187 QSIISKVYPFSKV-KINPATKTFQALRIYVNDELARLKRSLPFWVENLAKDGILAIITFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 S+EDR+VK FF S + A I+KK ++P+ +++ N+ SRSAKL Sbjct: 246 SIEDRIVKDFFGGLSCDLYA---------------KISKKPIMPSFDEIKKNKPSRSAKL 290 Query: 312 RA 313 R Sbjct: 291 RV 292 >gi|238809925|dbj|BAH69715.1| hypothetical protein [Mycoplasma fermentans PG18] Length = 320 Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 110/314 (35%), Positives = 168/314 (53%), Gaps = 18/314 (5%) Query: 7 KTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIAL 64 K + ++ H VLL++ I LN P + +D T G GG+S K +IA Sbjct: 11 KFLKEVVNKMENQHFSVLLQESIDALNIKPDGIYVDLTLGMGGHSSEILKRLDTGRLIAF 70 Query: 65 DRDPFAVSCGQETMRDYKE-QFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDC 120 D+D FA+ ++ + K F L + F ++ D + VDG++ DLG+SS Q+D Sbjct: 71 DKDTFAIEESRKRLSQIKSTNFQLIHSDFKNIKSELDKLNISQVDGIIADLGISSPQVDN 130 Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS+ K+ LDMRM S + A VVN + L ++L E K A ++A AI+ + Sbjct: 131 DERGFSYNKNARLDMRMDQSQKLDAYYVVNNYSESQLEQLLRNYAEVKLARQVAKAIISK 190 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R P TT +L+ ++ + Y +K ++ +P FQA+RI VNNE + L Q L+ A + Sbjct: 191 R---PITTTLELAQVV-RDAYPAKLVKLKNPNKAVFQAIRIEVNNEFDSLKQMLQDAIEL 246 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 LK L V++FHSLED +VK FF S ++ +P+ + KV +PT Sbjct: 247 LKPNTSLAVITFHSLEDSIVKHFFGS------LIKSKLPAKMPINEEKQYKVKVFLPTNN 300 Query: 299 DVAFNRRSRSAKLR 312 ++ N+RSRSAKLR Sbjct: 301 ELELNKRSRSAKLR 314 >gi|148240649|ref|YP_001226036.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. WH 7803] gi|262825757|sp|A5GP74|RSMH_SYNPW RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|147849188|emb|CAK24739.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. WH 7803] Length = 305 Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 112/311 (36%), Positives = 160/311 (51%), Gaps = 31/311 (9%) Query: 20 HVPVLLEKVIALLNPAPG-----KVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVS 72 HVPVL + ++ L+ P +++DAT G GG+S ++ I LD+DP A + Sbjct: 14 HVPVLADVLLNALDEEPSVHWQSGLVVDATLGGGGHSSLLLDRYPDLRLIGLDQDPTARA 73 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +KE+ S+ F+ DY P + V+ DLGVSS Q+D RGFSF+ GP Sbjct: 74 AAATRLSPWKERVSIVATNFA---DYSPPQSASLVLADLGVSSPQLDVAARGFSFRLDGP 130 Query: 133 LDMRMS--CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI-VKRRQSAPFQTTQ 189 LDMRM+ G +A +++ + DL ++ GEE+ + RIA I P+ T Sbjct: 131 LDMRMNPESDGETAGELIERMEESDLADLIYAYGEERLSRRIARRIKADLAAQGPYAGTA 190 Query: 190 DLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 + + ++ RIHPATR+FQALRI VN+E+ L Q L SA L+ GGLL ++ Sbjct: 191 SFAYAVAGCYPPKARRGRIHPATRTFQALRIAVNDELGVLDQLLSSAPGWLQPGGLLAII 250 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDR VK F IT++ +V + E+ N RSRS Sbjct: 251 SFHSLEDRRVKTAFLQDE-----------------RLDRITRRPLVASAEEQERNPRSRS 293 Query: 309 AKLRAGMRTVE 319 AKLR + E Sbjct: 294 AKLRIARKRSE 304 >gi|293366856|ref|ZP_06613532.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Staphylococcus epidermidis M23864:W2(grey)] gi|291319157|gb|EFE59527.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Staphylococcus epidermidis M23864:W2(grey)] Length = 304 Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 101/301 (33%), Positives = 164/301 (54%), Gaps = 11/301 (3%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETMRD 80 +L + I LN V +D T G G++ ++ +IA+D+D A+ +E +++ Sbjct: 1 MLNETIDYLNIKEDGVYVDCTLGGAGHALYLLNQLNDKGRLIAIDQDLTAIENAKEVLKE 60 Query: 81 YKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 + + + F +L + + + + VDG+ +DLGVSS Q+D +RGFS+ LDMRM Sbjct: 61 HLHKVTFVHNNFRELTNILNELEIEKVDGIYYDLGVSSPQLDVPERGFSYHNDAKLDMRM 120 Query: 138 S-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 +SA +VVNQ + + L RI GEEK + +IA I R+ P +TT +L +I+ Sbjct: 121 DQTQSLSAYEVVNQWSYEALVRIFFRYGEEKFSKQIARRIEAHREQQPIETTLELVDVIK 180 Query: 197 KTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + + ++ HPA R FQA+RI VN+E+ + A + +K GG + V++FHSLED Sbjct: 181 EGIPAKARRKGGHPAKRVFQAIRIAVNDELSAFEDSVEQAIECVKVGGRISVITFHSLED 240 Query: 256 RLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 RL K+ F + V +IP A+ + + +K + T +D+ N R+RSAKLR Sbjct: 241 RLCKQIFQEFEKGPDVPRGLPVIPE-AYTPKLKRVNRKPITATDDDLNDNNRARSAKLRV 299 Query: 314 G 314 Sbjct: 300 A 300 >gi|237747024|ref|ZP_04577504.1| S-adenosyl-methyltransferase MraW [Oxalobacter formigenes HOxBLS] gi|229378375|gb|EEO28466.1| S-adenosyl-methyltransferase MraW [Oxalobacter formigenes HOxBLS] Length = 321 Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 120/311 (38%), Positives = 178/311 (57%), Gaps = 20/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGK----VILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVS 72 H VLL + + L+ + GK V LD TFG GG+SR ++G ++A D+DP AV Sbjct: 8 HDSVLLNEAVDALDIS-GKRADGVYLDGTFGRGGHSRLILERLGEKGRLVAFDKDPEAVR 66 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 +E +F + TF+ L++ + + K +DG++ DLGVSS Q++ RGFSF+ Sbjct: 67 VAKEI---GDPRFEIVHGTFAALEEVLEERKIKAIDGILLDLGVSSPQVEDAKRGFSFRL 123 Query: 130 SGPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM S G+SA + + K + ++ GEE+ A +IA IV R P +T Sbjct: 124 DGPLDMRMDSTRGMSAREWLAVETEKKIAEVIYQYGEERFAFQIAKEIVAGRAIQPIDST 183 Query: 189 QDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 + L+ ++ + V F K +PATR+FQA+RI+VN E+EEL GL A + L G + V Sbjct: 184 KQLAQIVARAVKTFEKGK--NPATRTFQAIRIYVNRELEELEIGLEKAWQRLGLEGRMSV 241 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 +SFHSLEDR+VK+FFA ++ M R + I ++ P + K + P+ +V N R+ Sbjct: 242 ISFHSLEDRIVKRFFAGKATVKMPDRRLPIRASELPRPEMKLLGK-IKPSAAEVKRNVRA 300 Query: 307 RSAKLRAGMRT 317 RSA LR R Sbjct: 301 RSAILRVATRV 311 >gi|225549158|ref|ZP_03770133.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi 94a] gi|225370384|gb|EEG99822.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi 94a] Length = 296 Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 100/302 (33%), Positives = 170/302 (56%), Gaps = 24/302 (7%) Query: 20 HVPVLLEKVIALLNPAPGK---VILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 H PVLL+ + L+ P K + +D+T G G ++++ + +++ ++RDP + Sbjct: 7 HFPVLLDAICKLIEDLPVKSDLIYIDSTLGEGVHAKAILEKYDFLSLVGIERDPQILERA 66 Query: 75 QETMRDYKEQFSLFQATFSQL-QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ + ++E+ + F F +Y + + ++ DLG+S +GFSF + PL Sbjct: 67 RQFLSIFEERITYFNDWFDNFFVNYPLNVKANFILVDLGISMFHYKGSKKGFSFLEDEPL 126 Query: 134 DMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 DMR+ S ISA+++VN + DL ++ L E + RI+ AIV+ R+ +TT++L Sbjct: 127 DMRLCSSSCKISAAEIVNTYSKYDLEALIYDLSNEHYSRRISKAIVEYRKIKKIETTKEL 186 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 S+I K FSK +I+PAT++FQALRI+VN+E+ L + L + L G+L +++FH Sbjct: 187 QSIISKVYPFSKV-KINPATKTFQALRIYVNDELTRLKRSLPFWVENLAKDGILAIITFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 S+EDR+VK FF S S + A I+KK ++P+ ++ N+ SRSAKL Sbjct: 246 SIEDRIVKDFFRSLSCDLYA---------------KISKKPIMPSFGEIKKNKPSRSAKL 290 Query: 312 RA 313 R Sbjct: 291 RV 292 >gi|218258181|ref|ZP_03474583.1| hypothetical protein PRABACTJOHN_00237 [Parabacteroides johnsonii DSM 18315] gi|218225704|gb|EEC98354.1| hypothetical protein PRABACTJOHN_00237 [Parabacteroides johnsonii DSM 18315] Length = 310 Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 108/301 (35%), Positives = 163/301 (54%), Gaps = 17/301 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 HVPV+L + + L P V +D TFG GG+SR N + D+D A E Sbjct: 9 HVPVMLHESLEGLGIQPSGVYVDVTFGGGGHSREILNRLDNEGTLYGFDQDADA-----E 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +F ++ F L +++ GV DG++ DLGVSS D DRGFSF+ G Sbjct: 64 KNIPADSRFVFVRSNFRYLYNFMRYHGVAGEVDGLLADLGVSSHHFDDKDRGFSFRFDGA 123 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ +G +A+D+VN + L + + GE K A ++A +V+ R+ +T D Sbjct: 124 LDMRMNTRAGQTAADIVNTYTEEQLADLFYLYGELKVARKLASVLVRSREIKKIETIADF 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + K+ + FQALRI VN+E+ L + L+ + LK GG L+V+++H Sbjct: 184 LEVIKP--FTGKDKEKKFLAQVFQALRIEVNDEMRALREMLQQTLQVLKPGGRLVVITYH 241 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDRLVK F + + + A + + P F+ + KV+VP+ E++ N RSRSAKL Sbjct: 242 SLEDRLVKNFLKTGNFEGKAEQDFFGNIKSP--FRLVNNKVIVPSGEEIERNPRSRSAKL 299 Query: 312 R 312 R Sbjct: 300 R 300 >gi|237716641|ref|ZP_04547122.1| S-adenosyl-methyltransferase mraW [Bacteroides sp. D1] gi|262405416|ref|ZP_06081966.1| MraW methylase [Bacteroides sp. 2_1_22] gi|294809136|ref|ZP_06767854.1| S-adenosyl-methyltransferase MraW [Bacteroides xylanisolvens SD CC 1b] gi|229442624|gb|EEO48415.1| S-adenosyl-methyltransferase mraW [Bacteroides sp. D1] gi|262356291|gb|EEZ05381.1| MraW methylase [Bacteroides sp. 2_1_22] gi|294443690|gb|EFG12439.1| S-adenosyl-methyltransferase MraW [Bacteroides xylanisolvens SD CC 1b] Length = 304 Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 107/300 (35%), Positives = 162/300 (54%), Gaps = 16/300 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HVPVLL++ + +N P +D TFG G+SR G ++ D+D + Sbjct: 9 HVPVLLKESVDGMNIQPDGTYVDVTFGGAGHSREILSRLGEGGRLLGFDQDE---DAERN 65 Query: 77 TMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + D F ++ F LQ+ Y + VD ++ DLGVSS D +RGFSF+ G L Sbjct: 66 IVND--PHFIFVRSNFRYLQNFLRYHDIEQVDAILADLGVSSHHFDDSERGFSFRFDGAL 123 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +GI+A+D+VN + L +L + GE K + ++A IVK R +T + Sbjct: 124 DMRMNKRAGITAADIVNTYEEERLANLLYLYGELKNSRKLASVIVKARSGQYIRTIGEFL 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ F + + FQALRI VN E+E L + L +A +ALK GG L+V+++HS Sbjct: 184 EIIKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLLAATEALKPGGRLVVITYHS 241 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK + + + A + P F+ + KV+VP + ++ N RSRSAKLR Sbjct: 242 LEDRMVKNIMKTGNVEGKAESDFFGNLQTP--FRLVNNKVIVPDEAEIERNPRSRSAKLR 299 >gi|258645236|ref|ZP_05732705.1| S-adenosyl-methyltransferase MraW [Dialister invisus DSM 15470] gi|260402586|gb|EEW96133.1| S-adenosyl-methyltransferase MraW [Dialister invisus DSM 15470] Length = 310 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 106/302 (35%), Positives = 165/302 (54%), Gaps = 10/302 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H VL ++++ + +D T G GG+S + + SN +I +D+D A+ +E Sbjct: 5 HTTVLQNEMVSHVLTNTNGTYVDCTLGGGGHSLALAEGLSNLGCIIGVDQDGEAIEAAKE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +R + +F + FS + + + G VDG +FDLGVSS Q+D G RGFS+ +G L Sbjct: 65 RLRGAQCKFISVRDNFSNINGILKENGIEKVDGFIFDLGVSSHQLDDGARGFSYMNNGKL 124 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + ++A DV+N + L I+ GEE+ ASRI I + R P TT++L Sbjct: 125 DMRMDQRNSLTAYDVINTYTKEHLRNIIRDYGEERWASRIVDFIDRARMRRPISTTEELV 184 Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + ++ + HPA R+FQA+RI VNNE+ L + + L GG L V++FH Sbjct: 185 HVIKAAIPSAARRDGPHPAKRTFQAIRIEVNNELGILRKAMEDCINHLNKGGRLGVITFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR++K F S + + I H +S+ K + P+ ++V N R+RSA Sbjct: 245 SLEDRIIKNTFRDMSKDCICPSEIPICICNHRRQVRSVG-KAIRPSPQEVKENPRARSAV 303 Query: 311 LR 312 LR Sbjct: 304 LR 305 >gi|225375622|ref|ZP_03752843.1| hypothetical protein ROSEINA2194_01247 [Roseburia inulinivorans DSM 16841] gi|225212601|gb|EEG94955.1| hypothetical protein ROSEINA2194_01247 [Roseburia inulinivorans DSM 16841] Length = 312 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 105/310 (33%), Positives = 175/310 (56%), Gaps = 20/310 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 +H VLL + I LN P + +D T G GG++ S +I +D+D A++ Sbjct: 4 NHYSVLLNETIENLNIKPDGIYVDGTLGGGGHAYQVASRLSEKGRLIGIDQDADAIAAAG 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQ-KSG 131 E ++++ ++ ++ ++ ++ +++ + GV DG+V DLGVSS Q+D +RGF+++ ++ Sbjct: 64 ERLKEFGDKITIIRSNYANMKEELHRIGVEKVDGIVLDLGVSSFQLDTLERGFTYRDENA 123 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM ++A D+VN + DL RI+ GE+K A IA IV+ R P +TT + Sbjct: 124 PLDMRMDDRQSLTAKDIVNGYSEMDLYRIIRDYGEDKFAKNIAKHIVQERAKKPIETTGE 183 Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+ ++ + HPA R+FQA+RI +N E+E L L L GG + +++ Sbjct: 184 LTEIIRASIPMKVQVTGGHPAKRTFQAIRIELNKELEVLQNNLDDMIDLLNPGGRICIIT 243 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF------QSITKKVVVPTQEDVAFN 303 FHSLEDR+VK F PS+ V + +T+K ++P++E++ N Sbjct: 244 FHSLEDRIVKTNFKRNENPCTC-----PSDFPVCVCGKKSKGKVVTRKPILPSEEELEVN 298 Query: 304 RRSRSAKLRA 313 RS+SAKLR Sbjct: 299 SRSKSAKLRV 308 >gi|229827494|ref|ZP_04453563.1| hypothetical protein GCWU000182_02883 [Abiotrophia defectiva ATCC 49176] gi|229788432|gb|EEP24546.1| hypothetical protein GCWU000182_02883 [Abiotrophia defectiva ATCC 49176] Length = 322 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 101/316 (31%), Positives = 171/316 (54%), Gaps = 19/316 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H+P++LE+VI L+ P + +D T G GG+S K G +I +D+D A+ Sbjct: 11 HIPIMLEEVIEGLDIKPNGIYVDGTLGGGGHSYEIAKRLVSGGRLIGIDQDEAAIKAAGA 70 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + ++ ++ + ++ ++Q+ + G VDG++ DLGVSS Q+D +RGFS+ + L Sbjct: 71 RLSEFGDRVIIVRSNYAQMVSVLQSLGIEQVDGILLDLGVSSHQLDNAERGFSYMEDALL 130 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM +A D+VN + +LTRI+ GE++ A++I I+ R++ P +TT +L+ Sbjct: 131 DMRMDRRQEKTARDIVNYYSQAELTRIIRDYGEDRFAAKIVAKIIDFRENKPVETTGELA 190 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + + HPA R+FQA+RI +N E+ L + + L GG + V++FH Sbjct: 191 EIIKSAIPVKYRLTGGHPAKRTFQAIRIELNRELGVLEESIEGMLDILSDGGRMAVIAFH 250 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK------KVVVPTQEDVAFNRR 305 SLEDR+VK F P + V +K K ++P+ E+ N R Sbjct: 251 SLEDRIVKSAFKKAESPCTC-----PPDFPICVCGKKSKGFVASRKPLIPSDEETERNPR 305 Query: 306 SRSAKLRAGMRTVERS 321 ++S+KLR +R E + Sbjct: 306 AKSSKLRIFVRKREEN 321 >gi|148377639|ref|YP_001256515.1| S-adenosyl-methyltransferase [Mycoplasma agalactiae PG2] gi|263456537|sp|A5IYG2|RSMH_MYCAP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|148291685|emb|CAL59071.1| S adenosyl methyltransferase [Mycoplasma agalactiae PG2] Length = 300 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 107/306 (34%), Positives = 163/306 (53%), Gaps = 17/306 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H+P+LL + I LN + LD T G GG+S K N ++ D+D FA+ ++ Sbjct: 5 HIPILLNEAIKSLNIKSDGIYLDLTVGMGGHSSEILKRLKNGLLVGFDKDLFAIEESRKR 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + F L + F+ + D + VDG++ DLG+SS Q+D +RGFS+ K LD Sbjct: 65 LSKIGSNFQLIHSDFNNVADELAKLNINAVDGILVDLGISSPQVDNAERGFSYSKDARLD 124 Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM+ + + A VVN + +L I E K A ++A+AI+K R P TT +L+ Sbjct: 125 MRMNTNQALDAHFVVNTYSEDELITIFYNYAEVKLAKQVANAIIKNR---PINTTLELAE 181 Query: 194 LIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I K+ Y +K + +P FQA+RI VNNE + L A LK L +++FHS Sbjct: 182 VI-KSAYPAKLLSLKNPCKAVFQAIRIEVNNEFSSINSMLVQALNLLKKDSSLAIITFHS 240 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LED ++KKFF G ++ +H PS + KV P++ +++ N RSRSAKLR Sbjct: 241 LEDSIIKKFF----GNLIKSKH--PSKMPIKEEKKYIVKVYSPSKAEISENNRSRSAKLR 294 Query: 313 AGMRTV 318 + + Sbjct: 295 VLTKLI 300 >gi|262831581|sp|Q1Q846|RSMH_PSYCK RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 342 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 107/287 (37%), Positives = 160/287 (55%), Gaps = 15/287 (5%) Query: 39 VILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95 + +DATFG GG+SR + +I D+DP A+S +E + + + + +F+ L Sbjct: 53 IYVDATFGRGGHSRLLLSQLADDATLIVFDKDPTAISVARE-LANSDSRVKVVHDSFATL 111 Query: 96 QDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQA 151 D + VDG++ DLG+SS QID G RGFSF + G +DMRM S G S ++ + Sbjct: 112 TDSLAAMRITQVDGLMADLGISSPQIDDGSRGFSFMRDGAVDMRMDTSRGQSVAEWLETV 171 Query: 152 NVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPAT 211 + + L +L GEE+ + RIA AI +Q + +T L+ +I K + + HPAT Sbjct: 172 DDETLANVLYEFGEERHSRRIARAI---KQMDSYDSTLALAEVI-KVAHPNWQRGKHPAT 227 Query: 212 RSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRS-GKVM 270 +SFQA+RIF+NNE+ ++ L + LK GG L V+SFHSLEDR +K+F S G+ Sbjct: 228 QSFQAMRIFINNELGDVDNFLEQSIPILKVGGQLAVISFHSLEDRRIKQFLQRHSKGQYP 287 Query: 271 AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 ++ P F K V P++ +++ N RSRSA LR RT Sbjct: 288 EDENLPMPPKRPRYFSK--PKRVGPSKAEISHNPRSRSAWLRMATRT 332 >gi|307710487|ref|ZP_07646924.1| S-adenosyl-methyltransferase MraW [Streptococcus mitis SK564] gi|307618750|gb|EFN97889.1| S-adenosyl-methyltransferase MraW [Streptococcus mitis SK564] Length = 299 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 105/298 (35%), Positives = 168/298 (56%), Gaps = 14/298 (4%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDYKEQ--F 85 +L+ P + +DAT G G+S S ++ A D+D A+ Q+ + Y E+ Sbjct: 1 MLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQKRLAPYIEKGMV 60 Query: 86 SLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SG 141 + + F LQ + + GV DG+ +DLGVSS Q+D +RGFS++K PLDMRM+ + Sbjct: 61 TFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDAPLDMRMNQDAS 120 Query: 142 ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYF 201 ++A +VVN + DL RI GE+K + +IA I + R P +TT +L+ +I K+ Sbjct: 121 LTAYEVVNNYDYHDLVRIFFKYGEDKFSKQIARKIEQARDLKPIETTTELAEII-KSAKP 179 Query: 202 SKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259 +K + HPA + FQA+RI VN+E+ + ++ A L G + V++FHSLEDRL K Sbjct: 180 AKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVITFHSLEDRLTK 239 Query: 260 KFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 + F S +V IP + P + + +++K ++P+ E++ N RS SAKLR + Sbjct: 240 QLFKEASTVEVPKGLPFIPDDLKPKM-ELVSRKPILPSAEELEANNRSHSAKLRVARK 296 >gi|115444103|ref|NP_001045831.1| Os02g0137600 [Oryza sativa Japonica Group] gi|42409129|dbj|BAD10379.1| putative methyltransferase [Oryza sativa Japonica Group] gi|42409260|dbj|BAD10523.1| putative methyltransferase [Oryza sativa Japonica Group] gi|113535362|dbj|BAF07745.1| Os02g0137600 [Oryza sativa Japonica Group] gi|125538002|gb|EAY84397.1| hypothetical protein OsI_05773 [Oryza sativa Indica Group] Length = 436 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 119/345 (34%), Positives = 166/345 (48%), Gaps = 47/345 (13%) Query: 15 HTIGDHVPVLLEKVIALLN-PAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFA 70 H+ +HVPV+L +V+A P P + +D T GA G+S + + + I +D DP A Sbjct: 87 HSHAEHVPVMLGEVLAAFRRPLPLRSFVDCTLGAAGHSLAMMEAHPEMELYIGMDVDPSA 146 Query: 71 VSCG---------------------QETMRDYK--EQFSLFQATFSQLQDY--VPDKGVD 105 + G Q T+R Y + F + + + V GVD Sbjct: 147 LEIGRSRIEAFLANRETNGDDEDASQGTLRAYTHAKNFKYIKHVLGSVDENIAVGTSGVD 206 Query: 106 GVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILG 164 G++ DLG+SSMQ++ DRGFS + GPLDMRM + A D++N ++ RIL G Sbjct: 207 GILIDLGMSSMQVNRSDRGFSVLQDGPLDMRMDPKATLKAEDILNSWPDLEVGRILRDYG 266 Query: 165 EEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS--KNNRIHPATRSFQALRIFVN 222 EE + IVK R +T +L LIQ+T S + I ATR FQALRI VN Sbjct: 267 EESNWQSLQKRIVKARAMGGLHSTGELVKLIQRTCTSSGGRQGWIKTATRVFQALRIAVN 326 Query: 223 NEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF-------ASRSGKVMAVRHM 275 +E+ L L + L G L V+SFHSLEDR+VK+ F + V Sbjct: 327 DELRTLEDALHACFDCLATDGRLAVISFHSLEDRIVKQTFLELIHEDEIDDDEDDLVSAD 386 Query: 276 IPSNAHPAVFQSI--------TKKVVVPTQEDVAFNRRSRSAKLR 312 I S P Q + TK+ + P+QE+ N+R RSAKLR Sbjct: 387 IDSEDEPWFKQRVQGKNGTILTKRPISPSQEEEELNQRCRSAKLR 431 >gi|255558644|ref|XP_002520347.1| s-adenosyl-methyltransferase mraw, putative [Ricinus communis] gi|223540566|gb|EEF42133.1| s-adenosyl-methyltransferase mraw, putative [Ricinus communis] Length = 405 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 112/335 (33%), Positives = 171/335 (51%), Gaps = 45/335 (13%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 +HVPVLL +VI + + + +D T GA G+S + K N + +D DP A + + Sbjct: 70 NHVPVLLGEVIDVFSSLHLRSFVDCTLGAAGHSSAIIKGHPELENYVGMDVDPVAHAKAR 129 Query: 76 ETMRDYKEQFSL------FQATFSQLQDYVPD-------KGVDGVVFDLGVSSMQIDCGD 122 + D S F + F ++ + + GVD ++ DLG+SSMQ++ + Sbjct: 130 ACIDDLMHSHSCHLKVHTFLSNFKHVKPLLAEVDPNFFNSGVDAILMDLGMSSMQVNNPE 189 Query: 123 RGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFS +GPLDMRM + + A D++N ++ R+L GEE + + IV+ R Sbjct: 190 RGFSVLANGPLDMRMDPQASLKAEDILNSWPDTEVGRVLREYGEESNWHLLQNKIVQARL 249 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNR---IHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 TT DL LI+ + ++ R I ATR FQALRI VN+E+ L + L + + Sbjct: 250 RGGLHTTGDLVDLIRNMTHGTRGGRQGWIKTATRVFQALRIAVNDELGTLEKTLNACFEC 309 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFA---------------------SRSGKVMAVRHMIP 277 L GG L V+SFHSLEDR+VK+ F SR+ + M ++ ++ Sbjct: 310 LAPGGRLAVISFHSLEDRIVKQTFLKVIETGRGDGDADEEERFGRDSRNSEEMWIKSVVQ 369 Query: 278 SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 + +TK+ V P++E+ NRRSRSAKLR Sbjct: 370 GRNG----RILTKRPVTPSEEEERLNRRSRSAKLR 400 >gi|154494023|ref|ZP_02033343.1| hypothetical protein PARMER_03368 [Parabacteroides merdae ATCC 43184] gi|154086283|gb|EDN85328.1| hypothetical protein PARMER_03368 [Parabacteroides merdae ATCC 43184] Length = 308 Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 107/301 (35%), Positives = 165/301 (54%), Gaps = 17/301 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 HVPV+L + + L+ P V +D TFG GG+SR ++ + D+D A E Sbjct: 9 HVPVMLHESLEGLDIQPSGVYVDVTFGGGGHSREILNRLNDEGELYGFDQDADA-----E 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +F ++ F L +++ GV DG++ DLGVSS D DRGFSF+ G Sbjct: 64 KNIPADSRFVFVRSNFRYLYNFMRYHGVAGEVDGLLADLGVSSHHFDDKDRGFSFRFDGA 123 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ +G +A+D+VN + L + + GE K A ++A +V+ R+ +T D Sbjct: 124 LDMRMNTRAGQTAADIVNTYTEEQLADLFYLYGELKVARKLASVLVRSREIKKIETIADF 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + K+ + FQALRI VN+E+ L + L+ + LK GG L+V+++H Sbjct: 184 LEVIKP--FTGKDKEKKFLAQVFQALRIEVNDEMRALREMLQQTLQVLKPGGRLVVITYH 241 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDRLVK F + + + A + + P F+ + KV+VP+ E++ N RSRSAKL Sbjct: 242 SLEDRLVKNFLKTGNFEGKAEQDFFGNIRSP--FRLVNNKVIVPSDEEIERNPRSRSAKL 299 Query: 312 R 312 R Sbjct: 300 R 300 >gi|320102436|ref|YP_004178027.1| S-adenosyl-methyltransferase MraW [Isosphaera pallida ATCC 43644] gi|319749718|gb|ADV61478.1| S-adenosyl-methyltransferase MraW [Isosphaera pallida ATCC 43644] Length = 309 Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 114/305 (37%), Positives = 161/305 (52%), Gaps = 30/305 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQ 75 HVPVL + V+ L P ++LD T GAGG++ R G VI LDRDP + Sbjct: 27 HVPVLPQAVLEAL-PGGEVILLDGTVGAGGHAALLARRLTGRG-RVIGLDRDPAMLELAA 84 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSM---QIDCGDRGFSFQKSGP 132 L A++++ ++ + +G+ + L + Q+ RGFSFQ GP Sbjct: 85 RATHGLP--VELVHASYTEAREVLAARGLTAIDGLLLDLGLSSDQLAWTHRGFSFQNDGP 142 Query: 133 LDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMR + G +A+D+V Q + + L + GEE+ + R+A IV+ R+ AP TTQ L Sbjct: 143 LDMRFDTTQGETAADLVAQLDAEQLADLFYRYGEERFSRRVARRIVEERRLAPILTTQRL 202 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++++++ + + I PATR FQALRI VN E+E L + L + LK GG V+SFH Sbjct: 203 ATIVRRAIP-GRRGPIDPATRVFQALRIAVNRELEHLEEFLGGMAELLKPGGRAAVISFH 261 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR VK F R+ V ITKK +V T E+VA N R+RSAKL Sbjct: 262 SLEDRKVKHAF--RNDPRWTV---------------ITKKPIVATPEEVAANPRARSAKL 304 Query: 312 RAGMR 316 R R Sbjct: 305 RVAQR 309 >gi|257458293|ref|ZP_05623442.1| S-adenosyl-methyltransferase MraW [Treponema vincentii ATCC 35580] gi|257444320|gb|EEV19414.1| S-adenosyl-methyltransferase MraW [Treponema vincentii ATCC 35580] Length = 315 Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 108/307 (35%), Positives = 159/307 (51%), Gaps = 20/307 (6%) Query: 20 HVPVLLEKVIALLNP-APGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76 H PVLL++ + LL P P +++D T G GG+S +F VI +D DP + + Sbjct: 5 HTPVLLQECLQLLAPETPDPLLIDGTLGEGGHSEAFLNRFPQLKVIGIDADPAIQAKAKV 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVP--DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + + + F D P + ++FDLG+S RGFSF PLD Sbjct: 65 RLAPFGNRVRFFLGWSDDFFDQYPQDNPAPSLILFDLGISLFHYTESKRGFSFGADEPLD 124 Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MR++ ++A+D+VN + K L +L + EE+ + IA A+V R+ PF + LS Sbjct: 125 MRINPDESLTAADIVNTYSEKKLADVLYLYAEERFSRPIARAVVAEREKHPFTEARQLSE 184 Query: 194 LIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 + V ++ IHPAT++FQALRI VN+E++ L + L A L GG + V+SFHS Sbjct: 185 TVFHAVPARFRHGPIHPATKTFQALRIAVNSELDRLPRLLEKAFACLAEGGKMGVISFHS 244 Query: 253 LEDRLVKKFFASRSGKVMAVRHM-------IPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 LEDR+VK FF + + M +P A +TKK V P+ E+ A N Sbjct: 245 LEDRIVKLFFRDLAKSCICPPEMPICTCGGMPRAA------LLTKKPVCPSAEETAANAP 298 Query: 306 SRSAKLR 312 SRSA+LR Sbjct: 299 SRSARLR 305 >gi|256832298|ref|YP_003161025.1| S-adenosyl-methyltransferase MraW [Jonesia denitrificans DSM 20603] gi|256685829|gb|ACV08722.1| S-adenosyl-methyltransferase MraW [Jonesia denitrificans DSM 20603] Length = 334 Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 111/304 (36%), Positives = 176/304 (57%), Gaps = 10/304 (3%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSNVIAL--DRDPFAVSCG 74 H+PVL ++ + L+ PA P + +DAT G GG++R+ + NVIA+ DRD A++ Sbjct: 14 HIPVLRDRCLELMAPALNSPQALYVDATLGMGGHTRAVLEAFPNVIAIGIDRDAQALALA 73 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQKSG 131 E + + ++F T+ + + + G DG ++ DLGVSS+QID +RGF++ Sbjct: 74 SERLESFGQRFRAVHTTYDNIYRVIHEAGFDGAQAILMDLGVSSLQIDERERGFAYAHDA 133 Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S ++A+D++N + K L IL GEE+ A RIA AIV+RR+ P++ + + Sbjct: 134 PLDMRMDSSAPLTAADILNTYDEKRLATILKTYGEERFAPRIARAIVRRREERPWERSGE 193 Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L LI++++ ++ +PA R+FQALRI VN E++ LA L +A ++L GG L+V S Sbjct: 194 LVDLIRESIPAAARATGGNPAKRTFQALRIEVNEELDVLAHALPAAIESLVIGGRLLVES 253 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 +HSLEDR+ K F I H +++T+ + ++ N RS S Sbjct: 254 YHSLEDRMTKVEFTRGLQSSAPPDLPIEPETHRPYLRALTRGAEKADENELQSNPRSASV 313 Query: 310 KLRA 313 +LRA Sbjct: 314 RLRA 317 >gi|189347978|ref|YP_001944507.1| S-adenosyl-methyltransferase MraW [Chlorobium limicola DSM 245] gi|263445795|sp|B3EIL6|RSMH_CHLL2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|189342125|gb|ACD91528.1| S-adenosyl-methyltransferase MraW [Chlorobium limicola DSM 245] Length = 322 Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 112/313 (35%), Positives = 168/313 (53%), Gaps = 23/313 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--------MGSNVIALDRDPFAV 71 H PVL +V+ LL PG V +D T G GG+S + + S +I +D+D A+ Sbjct: 7 HEPVLAAEVLQLLVRMPG-VYVDGTLGGGGHSLAILEELERKGFLADSFLIGIDQDDHAL 65 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPD--------KGVDGVVFDLGVSSMQIDCGDR 123 E + + ++ + FS + V V G++ DLGVSS QID +R Sbjct: 66 KAASEKLSGFSGSTAIIKGNFSAIAAIVRKISAERHFTDSVAGILLDLGVSSAQIDTPER 125 Query: 124 GFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GFS+ +SGPLDMRM SA+D+VN + ++L + GEE ++ IA I+ R+ Sbjct: 126 GFSYMRSGPLDMRMDPEAESSAADLVNTLSERELVTLFFRYGEEPRSRSIARGIIDYREK 185 Query: 183 -APFQTTQDLSSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 T++L+ +I+ + ++ +R I +R FQALR+ VN E+E L Q L L Sbjct: 186 HGSILRTEELAEIIR--LREARPDRVIKTLSRVFQALRVEVNRELEVLEQVLADGASLLS 243 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQED 299 A G L V+S+HSLEDR+VK FF ++S R + + A F +T+K V Q++ Sbjct: 244 AQGRLAVISYHSLEDRMVKSFFTAQSSSDWGPRGVGLTEPLKKAEFAVVTRKPVASGQQE 303 Query: 300 VAFNRRSRSAKLR 312 ++ N RSRSAKLR Sbjct: 304 LSLNPRSRSAKLR 316 >gi|237802695|ref|YP_002887889.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis B/Jali20/OT] gi|231273929|emb|CAX10721.1| S-adenosyl-L-methionine-dependent methyltransferase [Chlamydia trachomatis B/Jali20/OT] Length = 300 Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 111/311 (35%), Positives = 165/311 (53%), Gaps = 24/311 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALD---RDPFAVSCGQE 76 H+PVL+++ ++L V D T GAGG++ +F ++ D RD A++ + Sbjct: 7 HIPVLVKESLSLFRDRNPVVFCDVTVGAGGHAEAFLTEFPSIERYDGSDRDLSALALSEN 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ-KSGPLDM 135 + +K++ L A+F ++ D DGV+ DLGVSSMQ++ +RGFSFQ + PLDM Sbjct: 67 RLLPFKDRVRLRHASFEEVDTLTSDGTYDGVLADLGVSSMQLNNLERGFSFQGEDHPLDM 126 Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM S G++AS+V+N +++ I GEE A A+V R+ T +DL Sbjct: 127 RMDTSRGMTASEVLNSLREEEIGEIFRNYGEEPLWRSAAAAVVHFRKKKKILTVKDLKDA 186 Query: 195 IQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 + +IHP T FQALRI+VN E +L L S+ + L+ GG L V+SF SL Sbjct: 187 TSGVFPSYRLRKKIHPLTLIFQALRIYVNQEGAQLKVLLDSSFRWLRPGGRLAVISFCSL 246 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 +DR VK F + + + +TKKV++P+ E+ N RSRSAKLR Sbjct: 247 DDRPVKWAFREAEARGLG--------------KILTKKVIMPSYEETRMNPRSRSAKLRC 292 Query: 314 GMRTVERSIED 324 E+S ED Sbjct: 293 ----FEKSFED 299 >gi|293370481|ref|ZP_06617034.1| S-adenosyl-methyltransferase MraW [Bacteroides ovatus SD CMC 3f] gi|299147137|ref|ZP_07040204.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 3_1_23] gi|292634473|gb|EFF53009.1| S-adenosyl-methyltransferase MraW [Bacteroides ovatus SD CMC 3f] gi|298515022|gb|EFI38904.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 3_1_23] Length = 304 Score = 164 bits (414), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 106/300 (35%), Positives = 162/300 (54%), Gaps = 16/300 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HVPVLL++ + +N P +D TFG G+SR G ++ D+D + Sbjct: 9 HVPVLLKESVDGMNIQPDGTYVDVTFGGAGHSREILSRLGEGGRLLGFDQDE---DAERN 65 Query: 77 TMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + D F ++ F L + Y + VD ++ DLGVSS D +RGFSF+ G L Sbjct: 66 IVND--THFIFVRSNFRYLHNFLRYHDIEQVDAILADLGVSSHHFDDSERGFSFRFDGAL 123 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +G++A+D+VN + + L IL + GE K + ++A IVK R +T + Sbjct: 124 DMRMNKRAGMTAADIVNTYDEERLANILYLYGELKNSRKLASVIVKARSGQNIRTIGEFL 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ F + + FQALRI VN E+E L + L +A +ALK GG L+V+++HS Sbjct: 184 EIIKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLLAATEALKPGGRLVVITYHS 241 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK + + + A + P F+ + KV+VP + ++ N RSRSAKLR Sbjct: 242 LEDRMVKNIMKTGNVEGKAETDFFGNLQTP--FRLVNNKVIVPDEAEIERNPRSRSAKLR 299 >gi|309804817|ref|ZP_07698881.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LactinV 09V1-c] gi|309806276|ref|ZP_07700289.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LactinV 03V1-b] gi|308165927|gb|EFO68146.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LactinV 09V1-c] gi|308167260|gb|EFO69426.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LactinV 03V1-b] Length = 280 Score = 163 bits (413), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 99/255 (38%), Positives = 147/255 (57%), Gaps = 13/255 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H VLL + I LN V +DATFG GG++ K SN +I D+D +A+ +++ Sbjct: 7 HYSVLLHETIDNLNLKNDGVYVDATFGGGGHASYLLKQLSNGHLIGFDQDEYAIELAKKS 66 Query: 78 MRDY-----KEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + K + SL F LQ + G+DG+ +DLGVSS Q D +RGFS++ Sbjct: 67 FSEVLKANSKPKLSLVHDNFGNLQQNLAKLGFIDGIDGIYYDLGVSSPQFDQPERGFSYR 126 Query: 129 KSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + LDMRM + A +VN + K+L+ IL G+EK A +IA IV +R P T Sbjct: 127 FNARLDMRMDQTKDLDAYKIVNTWSQKELSNILFKYGDEKYARQIAKNIVAKRAIKPITT 186 Query: 188 TQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T +L +I++ + F++ HPA +SFQA+RI VN+E+E L + L A + LK GG + Sbjct: 187 TFELVDIIKEAIPAFARRTGGHPAKKSFQAIRIAVNDELEVLEKSLLDAIEILKPGGRIC 246 Query: 247 VVSFHSLEDRLVKKF 261 V++F SLED++VKK+ Sbjct: 247 VITFQSLEDKIVKKY 261 >gi|120437110|ref|YP_862796.1| S-adenosyl-methyltransferase MraW [Gramella forsetii KT0803] gi|171460858|sp|A0M534|RSMH_GRAFK RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|117579260|emb|CAL67729.1| S-adenosyl-methyltransferase MraW [Gramella forsetii KT0803] Length = 302 Score = 163 bits (413), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 105/304 (34%), Positives = 173/304 (56%), Gaps = 17/304 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76 H PVLL++ + L+ P + +D TFG GG+S+ K +G + + A D+D A+ E Sbjct: 8 HNPVLLKESVDGLDVKPDGIYVDVTFGGGGHSKEILKRLGPDGKLYAFDQDKDALENKIE 67 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 R F+L F L+ ++ G VDGV+ D GVSS Q + +RGFS + L Sbjct: 68 DGR-----FTLINENFRYLKRFLRFYGIKKVDGVLGDFGVSSHQFNEAERGFSTRFDAKL 122 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +SA +V+N+ + L ++ + K A ++A IV R++ P +T++ L+ Sbjct: 123 DMRMNQGDKLSAYEVINEYEEEQLKKLFWAYADLKNAPKLARTIVSERKNNPIETSEQLN 182 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 L++ ++ K N+I + +QA+RI VN EIE L + L E+ LK GG L ++S+HS Sbjct: 183 DLLKPLLFKGKENKI--LAQIYQAIRIEVNQEIEVLKEFLLQTEEILKPGGRLSLISYHS 240 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDRLVK++ S + + M + + P F+ + +++P++E++ N R+RSAKLR Sbjct: 241 LEDRLVKRYIRSGLFEGEPEKDMYGNISVP--FKKVN-GLIIPSKEEIQQNNRARSAKLR 297 Query: 313 AGMR 316 + Sbjct: 298 VARK 301 >gi|308189974|ref|YP_003922905.1| S-adenosyl-methyltransferase [Mycoplasma fermentans JER] gi|319777256|ref|YP_004136907.1| s-adenosyl-methyltransferase mraw [Mycoplasma fermentans M64] gi|307624716|gb|ADN69021.1| S-adenosyl-methyltransferase [Mycoplasma fermentans JER] gi|318038331|gb|ADV34530.1| S-adenosyl-methyltransferase MraW [Mycoplasma fermentans M64] Length = 301 Score = 163 bits (413), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 109/301 (36%), Positives = 164/301 (54%), Gaps = 18/301 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77 H VLL++ I LN P + +D T G GG+S K +IA D+D FA+ ++ Sbjct: 5 HFSVLLQESIDALNIKPDGIYVDLTLGMGGHSSEILKRLDTGRLIAFDKDTFAIEESRKR 64 Query: 78 MRDYKE-QFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + K F L + F ++ D + VDG++ DLG+SS Q+D +RGFS+ K+ L Sbjct: 65 LSQIKSTNFQLIHSDFKNIKSELDKLNISQVDGIIADLGISSPQVDNDERGFSYNKNARL 124 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S + A VVN + L ++L E K A ++A AI+ +R P TT +L+ Sbjct: 125 DMRMDQSQKLDAYYVVNNYSESQLEQLLRNYAEVKLARQVAKAIISKR---PITTTLELA 181 Query: 193 SLIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++ + Y +K ++ +P FQA+RI VNNE + L Q L+ A + LK L V++FH Sbjct: 182 QVV-RDAYPAKLVKLKNPNKAVFQAIRIEVNNEFDSLKQMLQDAIELLKPNTSLAVITFH 240 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLED +VK FF S ++ +P+ + KV +PT ++ N+RSRSAKL Sbjct: 241 SLEDSIVKHFFGS------LIKSKLPAKMPINEEKQYKVKVFLPTNNELELNKRSRSAKL 294 Query: 312 R 312 R Sbjct: 295 R 295 >gi|224029029|gb|ACN33590.1| unknown [Zea mays] Length = 436 Score = 163 bits (413), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 120/349 (34%), Positives = 164/349 (46%), Gaps = 51/349 (14%) Query: 20 HVPVLLEKVIALLN-PAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCGQ 75 H+PVLL +V+A P P + +D T GA G+S + + + I +D DP A+ G Sbjct: 88 HIPVLLGEVLAAFRRPRPLRSFVDCTLGAAGHSLAMMEAHPELELYIGMDVDPSALGIGH 147 Query: 76 E-----------------------TMRDYK--EQFSLFQATFSQLQD--YVPDKGVDGVV 108 T+R Y + F + S + + V GVDG++ Sbjct: 148 GHIEAFLAGREREANGGEDDALLGTLRAYTHVKNFKYIKQVLSSVDESLVVGSSGVDGIL 207 Query: 109 FDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEK 167 DLG+SSMQ++ +RGFS + GPLDMRM + A D++N +L RIL GEE Sbjct: 208 IDLGMSSMQVNKSNRGFSVLQDGPLDMRMDPKATLRAEDILNSWPELELGRILREYGEES 267 Query: 168 QASRIAHAIVKRRQSAPFQTTQDLSSLIQK--TVYFSKNNRIHPATRSFQALRIFVNNEI 225 + IVK R +T DL LIQ+ T+ + I +TR FQALRI VN+E+ Sbjct: 268 NWQSVQKQIVKARSVGGLHSTGDLVKLIQRMCTISSGRQGWIKTSTRVFQALRIAVNDEL 327 Query: 226 EELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF---------ASRSGKVMAVRHMI 276 L L S L GG L V+SFHSLEDR+VKK F K I Sbjct: 328 RVLEDSLHSCFDCLATGGRLAVISFHSLEDRIVKKTFLELIHGGEANEEDDKDDQALTDI 387 Query: 277 PSNAHPAVFQSI--------TKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 P Q + TK+ + P+QE+ N+R RSAKLR +T Sbjct: 388 EDGDEPWSGQRVQGRNGTVLTKRPITPSQEEEKLNQRCRSAKLRVIQKT 436 >gi|160883877|ref|ZP_02064880.1| hypothetical protein BACOVA_01850 [Bacteroides ovatus ATCC 8483] gi|156110607|gb|EDO12352.1| hypothetical protein BACOVA_01850 [Bacteroides ovatus ATCC 8483] Length = 309 Score = 163 bits (413), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 105/300 (35%), Positives = 162/300 (54%), Gaps = 16/300 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HVPVLL++ + +N P +D TFG G+SR G ++ D+D + Sbjct: 14 HVPVLLKESVDGMNIQPDGTYVDVTFGGAGHSREILSRLGEGGRLLGFDQDE---DAERN 70 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + D F ++ F L +++ VD ++ DLGVSS D +RGFSF+ G L Sbjct: 71 IVND--THFIFVRSNFRYLHNFLRYHNIEQVDAILADLGVSSHHFDDSERGFSFRFDGAL 128 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +G++A+D+VN + + L IL + GE K + ++A IVK R +T + Sbjct: 129 DMRMNKRAGMTAADIVNTYDEERLANILYLYGELKNSRKLASVIVKARSGQNIRTIGEFL 188 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ F + + FQALRI VN E+E L + L +A +ALK GG L+V+++HS Sbjct: 189 EVIKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLLAATEALKPGGRLVVITYHS 246 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK + + + A + P F+ + KV+VP + ++ N RSRSAKLR Sbjct: 247 LEDRMVKNIMKTGNVEGKAETDFFGNLQTP--FRLVNNKVIVPDEAEIERNPRSRSAKLR 304 >gi|297243796|ref|ZP_06927726.1| S-adenosylmethionine-dependent methyltransferase [Gardnerella vaginalis AMD] gi|296888217|gb|EFH26959.1| S-adenosylmethionine-dependent methyltransferase [Gardnerella vaginalis AMD] Length = 345 Score = 163 bits (413), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 108/317 (34%), Positives = 172/317 (54%), Gaps = 13/317 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMG--SNVIA 63 M+ + H PVLL+ + L+ P+ G +++D T G G++ +F K + +I Sbjct: 1 MTDVMKDITAIHAPVLLQDCVDLVTPSLQHKGAIVVDCTLGLAGHATAFLKAAPFATLIG 60 Query: 64 LDRDPFAVSCGQETMRD--YKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQI 118 +DRD A+S + MR + +F A F ++ + + + +DG+ DLG+SS+QI Sbjct: 61 IDRDAEALSLATQRMRSEGLENRFIPAHAAFDEIDEVLRENRIDGIDAAFMDLGLSSLQI 120 Query: 119 DCGDRGFSFQKSGPLDMRMSCSGISASDVVNQA-NVKDLTRILGILGEEKQASRIAHAIV 177 D DRGFS+ LDMRM + + + + + + LTRI GEE+ AS IA IV Sbjct: 121 DETDRGFSYSHDTALDMRMDTTQATTAATILATYDSRGLTRIFREYGEERFASLIARRIV 180 Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 + R + P T+ L SL+ + + +PA R FQALRI VN E+++L+ L Sbjct: 181 EVRATEPIATSGQLVSLVDSVIPKAHRATGNPAKRVFQALRIEVNGELDKLSCTLPKIAL 240 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFF-ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296 L+ G L+V S+HSLED VK+F + V A +IP +A P F+++T+ + + Sbjct: 241 HLREHGRLVVESYHSLEDTAVKRFMNQGLTVDVPANMPVIPDDAQP-FFKALTRGAMKAS 299 Query: 297 QEDVAFNRRSRSAKLRA 313 +E++ N RS S +LRA Sbjct: 300 KEEIVHNTRSSSVRLRA 316 >gi|295086283|emb|CBK67806.1| S-adenosyl-methyltransferase MraW [Bacteroides xylanisolvens XB1A] Length = 304 Score = 163 bits (413), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 106/300 (35%), Positives = 161/300 (53%), Gaps = 16/300 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HVPVLL++ + +N P +D TFG G+SR G ++ D+D + Sbjct: 9 HVPVLLKESVDGMNIQPDGTYVDVTFGGAGHSREILSRLGEGGRLLGFDQDE---DAERN 65 Query: 77 TMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + D F ++ F LQ+ Y + VD ++ DLGVSS D +RGFSF+ G L Sbjct: 66 IVND--PHFIFVRSNFRYLQNFLRYHDIEQVDAILADLGVSSHHFDDSERGFSFRFDGAL 123 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +GI+A+D+VN + L + + GE K + ++A IVK R +T + Sbjct: 124 DMRMNKRAGITAADIVNTYEEERLANLFYLYGELKNSRKLASVIVKTRSGQNIRTIGEFL 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ F + + FQALRI VN E+E L + L +A +ALK GG L+V+++HS Sbjct: 184 EIIKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLLAATEALKPGGRLVVITYHS 241 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK + + + A + P F+ + KV+VP + ++ N RSRSAKLR Sbjct: 242 LEDRMVKNIMKTGNVEGKAESDFFGNLQTP--FRLVNNKVIVPDEAEIERNPRSRSAKLR 299 >gi|302788300|ref|XP_002975919.1| hypothetical protein SELMODRAFT_175313 [Selaginella moellendorffii] gi|300156195|gb|EFJ22824.1| hypothetical protein SELMODRAFT_175313 [Selaginella moellendorffii] Length = 373 Score = 163 bits (413), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 109/317 (34%), Positives = 163/317 (51%), Gaps = 26/317 (8%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCGQE 76 H PVL+ + + K LD T GAGG++ + + + +D DP A+ ++ Sbjct: 66 HTPVLVRQFLEHFEGRSVKTFLDCTVGAGGHAFEIIQAHPELETFVGMDVDPCALKLARQ 125 Query: 77 TMRDYK---EQFSLFQATFSQ----LQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFS 126 + D + LF A F L++ P+ +G DG++ DLG+SSMQ+D +RGFS Sbjct: 126 RLSDLSGSMAKVDLFHANFKNMKKDLKERNPELLERGFDGILLDLGLSSMQVDAPERGFS 185 Query: 127 FQKSGPLDMRMSCS---GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 + GPLDMRM S G++A + N + ++ RIL GEE + +A IV R + Sbjct: 186 YYLDGPLDMRMDSSDVLGLTAEAICNNWSAAEIGRILREYGEEMRWKFLASRIVDARLNG 245 Query: 184 PFQTTQDLSSLIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 +TT+DL+S++ + R HPA R+FQALRI VN+E++ L + A L G Sbjct: 246 GIKTTKDLASVVGGRFTSGRFKRARHPAARTFQALRIAVNDELKSLRSAIGHASSCLAPG 305 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G L V+SFHSLEDR+VK F S ++ A A F +T + ++ Sbjct: 306 GRLAVISFHSLEDRIVKYQFKELS--------LVFDKADLA-FMLLTTSPITADAAEIEK 356 Query: 303 NRRSRSAKLRAGMRTVE 319 N R RSAK+R R + Sbjct: 357 NSRCRSAKMRVIQRLCQ 373 >gi|291529266|emb|CBK94852.1| S-adenosyl-methyltransferase MraW [Eubacterium rectale M104/1] Length = 314 Score = 163 bits (413), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 101/305 (33%), Positives = 169/305 (55%), Gaps = 14/305 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H VL ++ I LN P + +D T G G+S K S+ +I +D+D A+ E Sbjct: 5 HYSVLRDETIENLNIRPDGIYVDGTLGGAGHSYEIAKRLSDKGRLIGIDQDADAIKAAGE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQ-KSGP 132 + ++ ++ ++ ++ +S +++ + G VDG++ DLGVSS Q+D RGF+++ + P Sbjct: 65 RLAEFGDRVTIVRSNYSDMKNVLHSLGIEKVDGIMLDLGVSSFQLDTPKRGFTYRSEDAP 124 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + ++A D+VN + DL RI+ GE+K A IA IV RQ TT +L Sbjct: 125 LDMRMDDRNALTARDIVNTYSENDLYRIIRDYGEDKFAKNIAKHIVAARQKQEITTTGEL 184 Query: 192 SSLIQKTVYFSKNNRI---HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 + +I+ + K R HP+ R++QA+RI +N+E++ L L L GG + ++ Sbjct: 185 NEIIKAAI--PKKVRATGGHPSKRTYQAIRIELNHELDVLRDNLDDMIDLLNPGGRICII 242 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+VK F + + + IT+K ++P+++++ N RS+ Sbjct: 243 TFHSLEDRIVKSNFKKNENPCTCPPSFPVCVCGNKSKGTVITRKPILPSEKELEENSRSK 302 Query: 308 SAKLR 312 SAKLR Sbjct: 303 SAKLR 307 >gi|312196214|ref|YP_004016275.1| S-adenosyl-methyltransferase MraW [Frankia sp. EuI1c] gi|311227550|gb|ADP80405.1| S-adenosyl-methyltransferase MraW [Frankia sp. EuI1c] Length = 341 Score = 163 bits (413), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 109/295 (36%), Positives = 169/295 (57%), Gaps = 12/295 (4%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCG 74 H+PVLL++V LL PA PG + +DAT G GG++ + + + + LDRDP A++ Sbjct: 5 HIPVLLDRVRTLLTPALTQPGAIAVDATLGLGGHAEAMLRALPELRLVGLDRDPQALAAS 64 Query: 75 QETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +E + + A + ++ D + V V+FDLGVSS+Q+D DRGF++ + Sbjct: 65 RERLAFAAGRVEFAHAVYDEIPAVLDRLGIPAVHAVLFDLGVSSLQLDLDDRGFAYSRDA 124 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM +G +A+DV+N + L R+L GEE A RIA A+V R F T+ Sbjct: 125 PLDMRMDPTTGRTAADVLNTYDEAALARVLRRYGEEPFARRIAAAVVAERAREAFTTSSR 184 Query: 191 LSSLIQKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ L++ + + +PA R+FQALRI VN E+E L + L +A + GG + V++ Sbjct: 185 LADLVRAAIPAAARRTGGNPAKRTFQALRIEVNAELEVLERALPAALDRIAVGGRIAVLA 244 Query: 250 FHSLEDRLVKKFFAS-RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 +HSLEDRLVK+ A + +V ++P+ A P F+ +T+ PT+ + A N Sbjct: 245 YHSLEDRLVKRALADVTTTRVPPDMPVVPAEAEP-TFRLLTRGSEPPTEAETAAN 298 >gi|242373465|ref|ZP_04819039.1| S-adenosyl-methyltransferase MraW [Staphylococcus epidermidis M23864:W1] gi|242348828|gb|EES40430.1| S-adenosyl-methyltransferase MraW [Staphylococcus epidermidis M23864:W1] Length = 304 Score = 163 bits (412), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 100/301 (33%), Positives = 162/301 (53%), Gaps = 11/301 (3%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETMRD 80 +L + I LN V +D T G G++ ++ +IA+D+D A+ +E +++ Sbjct: 1 MLNETIDYLNIKEDGVYVDCTLGGAGHALYLLNQLNDEGRLIAIDQDLTAIENAKEVLKE 60 Query: 81 YKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 + + + F +L + + + + VDG+ +DLGVSS Q+D +RGFS+ LDMRM Sbjct: 61 HLHKVTFVHNNFRELTNILKELNIEKVDGIYYDLGVSSPQLDVPERGFSYHHDAKLDMRM 120 Query: 138 S-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 +SA +VVN+ + + L +I GEEK + +IA I R+ P +TT L +I+ Sbjct: 121 DQTQSLSAYEVVNEWSYEALVKIFYRYGEEKFSKQIARRIEANREQQPIETTLQLVDIIK 180 Query: 197 KTVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 + + +K R HPA R FQA+RI VN+E+ + A + +K G + V++FHSLE Sbjct: 181 EGIP-AKARRKGGHPAKRVFQAIRIAVNDELSAFEDSIEQAIENVKVNGRISVITFHSLE 239 Query: 255 DRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 DRL K+ F R + I A+ + + +K + T+ED+ N R+RSAKLR Sbjct: 240 DRLCKQIFQEYEKGPEVPRGLPIIPEAYSPKLKRVNRKPITATEEDLDENNRARSAKLRV 299 Query: 314 G 314 Sbjct: 300 A 300 >gi|309809920|ref|ZP_07703768.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners SPIN 2503V10-D] gi|308169708|gb|EFO71753.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners SPIN 2503V10-D] Length = 280 Score = 163 bits (412), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 99/255 (38%), Positives = 147/255 (57%), Gaps = 13/255 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H VLL + I LN V +DATFG GG++ K SN +I D+D +A+ +++ Sbjct: 7 HYSVLLHETIDNLNLKNDGVYVDATFGGGGHASYLLKQLSNGHLIGFDQDEYAIELAKKS 66 Query: 78 MRDY-----KEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + K + SL F LQ + G+DG+ +DLGVSS Q D +RGFS++ Sbjct: 67 FLEVLKANSKPKLSLVHDNFGNLQQNLAKLGFIDGIDGIYYDLGVSSPQFDQPERGFSYR 126 Query: 129 KSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + LDMRM + A +VN + K+L+ IL G+EK A +IA IV +R P T Sbjct: 127 FNARLDMRMDQTKDLDAYKIVNTWSQKELSNILFKYGDEKYARQIAKNIVAKRAIKPITT 186 Query: 188 TQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T +L +I++ + F++ HPA +SFQA+RI VN+E+E L + L A + LK GG + Sbjct: 187 TFELVDIIKEAIPAFARRTGGHPAKKSFQAIRIAVNDELEVLEKSLLDAIEILKPGGRIC 246 Query: 247 VVSFHSLEDRLVKKF 261 V++F SLED++VKK+ Sbjct: 247 VITFQSLEDKIVKKY 261 >gi|298245975|ref|ZP_06969781.1| S-adenosyl-methyltransferase MraW [Ktedonobacter racemifer DSM 44963] gi|297553456|gb|EFH87321.1| S-adenosyl-methyltransferase MraW [Ktedonobacter racemifer DSM 44963] Length = 320 Score = 163 bits (412), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 108/298 (36%), Positives = 160/298 (53%), Gaps = 16/298 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 HV V+LE+V+ L P PG +D T G GG++ + + V+ +D D A + Q Sbjct: 8 HVSVMLEEVMEYLRPQPGGHYIDGTLGGGGHTSVLLERSAPDGKVLGIDTDSKAQARVQA 67 Query: 77 TM-RDYKE-QFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + ++ E + L FS ++ + VDG++ DLG SS Q+D RGFSF G Sbjct: 68 RLSKEVAEGRLILSHGNFSDMERLAQEAQFTSVDGILLDLGFSSDQMDDPQRGFSFSADG 127 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMR+S ++A+D+VN ++L I GEE+++ +IA I + RQ T Sbjct: 128 PLDMRLSQDLSLTAADLVNNTGEEELADIFWRYGEERRSRQIARRIGRERQKRAITRTSQ 187 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG---GLLIV 247 L+ + V + K IHPATR FQALRI VN E+E L L L+AG G +++ Sbjct: 188 LAEIAAAGVPY-KYGAIHPATRVFQALRIAVNQELESLETALPQMLSLLQAGGKQGRMVI 246 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDVAFN 303 ++FHSLEDR+VK+F R + IP H A + +T K +VP +++VA N Sbjct: 247 IAFHSLEDRIVKEFL-RREARDCLCPPRIPMCICGHKASLRILTNKPIVPGEQEVAAN 303 >gi|313896117|ref|ZP_07829671.1| S-adenosyl-methyltransferase MraW [Selenomonas sp. oral taxon 137 str. F0430] gi|312975542|gb|EFR41003.1| S-adenosyl-methyltransferase MraW [Selenomonas sp. oral taxon 137 str. F0430] Length = 310 Score = 163 bits (412), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 114/305 (37%), Positives = 156/305 (51%), Gaps = 16/305 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 HV VL + +A L P +D T G G++ S +I +D+D A++ Q Sbjct: 5 HVSVLPAETVAALAVVPEGTYVDCTLGGAGHAGRIAAQLSPAGRLIGIDQDETAIAAAQV 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + SL F L + +GV DG++FDLGVSS QID RGFS+ + PL Sbjct: 65 RLASAACRVSLVHDNFRNLTAILTAEGVSAVDGILFDLGVSSPQIDTAARGFSYMQDAPL 124 Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + SA VVN+ + LT I GEE+ A RIA I R+ P +TT +L Sbjct: 125 DMRMDRRAVRSAHTVVNEYSAARLTEIFYTYGEERWAKRIAAFIEAARKERPIETTGELV 184 Query: 193 SLIQKTVYFSKNNRI---HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 +I + V K R HPA R FQA+RI VN E+ L+ + +A ALK GG L V++ Sbjct: 185 EIIDRAV--PKKVRAKGGHPAKRVFQAIRIEVNEELTILSDAVTAAVHALKPGGRLAVIT 242 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 FHSLEDR+VK+ + + H P+ H + I K E A N R++ Sbjct: 243 FHSLEDRIVKRTMQQLARGCICPPHT-PACICGHTPELRLIGKAQTASLAE-CAVNARAK 300 Query: 308 SAKLR 312 SAKLR Sbjct: 301 SAKLR 305 >gi|291563991|emb|CBL42807.1| S-adenosyl-methyltransferase MraW [butyrate-producing bacterium SS3/4] Length = 311 Score = 163 bits (412), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 105/311 (33%), Positives = 179/311 (57%), Gaps = 11/311 (3%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGY----SRSFCKMGSNVIALDRDPFAVS 72 I +H VLL + + LN P + +D T G GG+ SR + G +I +D+D A++ Sbjct: 2 IFEHKSVLLMETVDSLNVKPDGIYVDGTLGGGGHAYEVSRRLGEKG-RLIGIDQDADAIA 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK 129 E + +K++ ++ ++ + +++ + + G VDG+ DLGVSS Q+D DRGFS+++ Sbjct: 61 AATERLLPFKDKVTIVRSNYKNIREVLFNLGIEKVDGIYLDLGVSSYQLDTADRGFSYRE 120 Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM + +A+D+VN + +L RI+ GE++ A IA IV+ R+ P +TT Sbjct: 121 DAPLDMRMDQRNDKTAADIVNGYSEMELYRIIRDYGEDRFAKNIAKHIVREREIHPIETT 180 Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 L+ +I+ + + HPA R+FQA+RI +N+E++ L + + L GG L + Sbjct: 181 LQLAEIIRGAIPAKIRAEGGHPAKRTFQAIRIELNHELDVLNDSIDTMIDLLNPGGRLSI 240 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 ++FHSLEDR+VK F + + + + + +T+K +VP+ E++ NRRS Sbjct: 241 ITFHSLEDRIVKTRFRTNENPCICPPDFPVCVCGRKSKGRVVTRKPIVPSDEELEENRRS 300 Query: 307 RSAKLRAGMRT 317 +S+KLR R+ Sbjct: 301 KSSKLRVFERS 311 >gi|42559428|sp|P60399|RSMH_SPIKU RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|37781879|gb|AAP42766.1| putative S-adenosylmethionine-dependent methyltransferase [Spiroplasma kunkelii CR2-3x] Length = 313 Score = 163 bits (412), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 112/304 (36%), Positives = 165/304 (54%), Gaps = 12/304 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H VLL++ I+ LN + +D T G G+S K N + ++D A+ +E Sbjct: 5 HQTVLLQEAISGLNVQNNGIYVDCTLGRAGHSLEILKHLPNGKLYCFEQDEAAIVVSEEI 64 Query: 78 MRDYK-EQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ K + + + F L + K V+G+++DLGVSS Q+D RGFS++ PL Sbjct: 65 LQKSKYRNYEIIKNNFVNLAAELQLRNVKAVNGILYDLGVSSPQLDDDKRGFSYRYDSPL 124 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ G++A VVN + + L ++ GEE A IA IV R TT L Sbjct: 125 DMRMNQHQGLTAKTVVNTYSQEALVKLFQDYGEEPFAKVIAKTIVIARNEQEIVTTFHLV 184 Query: 193 SLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+K++ K + HPA R FQALRI VN E+ L + LR A L G L+V+SF Sbjct: 185 EIIKKSLPQKILKKAK-HPAKRVFQALRIEVNQELFVLQESLRQATTLLAVHGRLVVISF 243 Query: 251 HSLEDRLVKKFFASRSGK-VMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRS 308 HSLEDR+VKK+F S + + +P+ ++ + + ITKKV+V + + N RSRS Sbjct: 244 HSLEDRIVKKYFQSLTKDPNYEINQQLPAISYFESDYHIITKKVIVSSVTEQTNNHRSRS 303 Query: 309 AKLR 312 AKLR Sbjct: 304 AKLR 307 >gi|329122136|ref|ZP_08250744.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Dialister micraerophilus DSM 19965] gi|327466943|gb|EGF12459.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Dialister micraerophilus DSM 19965] Length = 310 Score = 163 bits (412), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 105/309 (33%), Positives = 171/309 (55%), Gaps = 20/309 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQE 76 HV VL ++I+ + V D T G G+ + G+ +I +D+D A+ + Sbjct: 5 HVTVLRREMISAILTDKNGVYADCTLGGAGHLSLLSEKVENGALLIGIDQDLDALKAAEL 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 M+D + + FS +++ + +K ++G +FDLGVSS Q+D +RGFS+ G L Sbjct: 65 RMKDCTCNLNFVHSNFSNIKNILSEKNLNQINGFIFDLGVSSYQLDEANRGFSYMHEGRL 124 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ S ++A DVVN+ + + + I+ GEE+ A RIA IV R++ +TT +L Sbjct: 125 DMRMNQNSELTAHDVVNKYSEEKIAFIIKEYGEERWAKRIAEFIVDYRKNKIIETTGELV 184 Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 S+I+ + ++ N HPA R+FQA+RI VNNE+ + + L +GG + +++FH Sbjct: 185 SIIKAAIPLGARKNGPHPAKRTFQAIRIEVNNELGIIESTINDCVDCLVSGGRIGIITFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV------VVPTQEDVAFNRR 305 SLEDR+VK+ F K +A + + P P + +K+ + PT E++A N R Sbjct: 245 SLEDRIVKRTF-----KNLAKQCICPP-EFPLCVCNHQRKIKLLGNGIRPTDEEIAENPR 298 Query: 306 SRSAKLRAG 314 +RSA LR Sbjct: 299 ARSAILRVA 307 >gi|295398679|ref|ZP_06808703.1| S-adenosyl-methyltransferase MraW [Aerococcus viridans ATCC 11563] gi|294973114|gb|EFG48917.1| S-adenosyl-methyltransferase MraW [Aerococcus viridans ATCC 11563] Length = 316 Score = 162 bits (411), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 101/304 (33%), Positives = 164/304 (53%), Gaps = 11/304 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+ VLL + + L P + +D T G G+S S+ +IA D+D A+ ++ Sbjct: 7 HISVLLNESVDGLAIKPNGIYVDCTLGGAGHSSKIAAALSDEGRLIAFDQDLVAIGNAEK 66 Query: 77 TMRDYKE--QFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + E + +L F +Q + GVDG+++DLGVSS Q+D +RGFS+ + Sbjct: 67 VLAAEIESGKVTLVHNNFRHIQSELEKMGITGVDGILYDLGVSSPQLDEIERGFSYHQDA 126 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM ++A ++N DL RI GEEK + +IA I +RR T++ Sbjct: 127 PLDMRMDQTQALTAETIINDWEYNDLVRIFYRYGEEKFSKQIARKIEQRRADHRITRTEE 186 Query: 191 LSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L ++++ + ++ HPA R FQA+RI VN+E+ + L A L GG + +S Sbjct: 187 LVDIVKEAIPAPARRKGGHPAKRIFQAVRIAVNDELGAIEDSLEQALNLLNVGGRVSAIS 246 Query: 250 FHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 F SLEDR+VK+ F S G+ + + + A F+ + +K + ++E++A+N R++S Sbjct: 247 FQSLEDRIVKQMFKDASTGEELPANLPVINADIEAPFKLVNRKPIYASEEELAYNSRAQS 306 Query: 309 AKLR 312 AKLR Sbjct: 307 AKLR 310 >gi|315920696|ref|ZP_07916936.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313694571|gb|EFS31406.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 309 Score = 162 bits (411), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 105/300 (35%), Positives = 162/300 (54%), Gaps = 16/300 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HVPVLL++ + +N P +D TFG G+SR G ++ D+D + Sbjct: 14 HVPVLLKESVDGMNIQPDGTYVDVTFGGAGHSREILSRLGEGGRLLGFDQDE---DAERN 70 Query: 77 TMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + D F ++ F L + Y + VD ++ DLGVSS D +RGFSF+ G L Sbjct: 71 IVND--THFIFVRSNFRYLHNFLRYHNIEQVDAILADLGVSSHHFDDSERGFSFRFDGAL 128 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +G++A+D+VN + + L IL + GE K + ++A IVK R +T + Sbjct: 129 DMRMNKRAGMTAADIVNTYDEERLANILYLYGELKNSRKLASVIVKARSGQNIRTIGEFL 188 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +++ F + + FQALRI VN E+E L + L +A +ALK GG L+V+++HS Sbjct: 189 EVVKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLLAATEALKPGGRLVVITYHS 246 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK + + + A + P F+ + KV+VP + ++ N RSRSAKLR Sbjct: 247 LEDRMVKNIMKTGNVEGKAETDFFGNLQTP--FRLVNNKVIVPDEAEIERNPRSRSAKLR 304 >gi|263447803|sp|Q2NIH4|RSMH_AYWBP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 303 Score = 162 bits (411), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 106/305 (34%), Positives = 162/305 (53%), Gaps = 15/305 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H+ VL ++ I L P + +DAT G G++ + + + D+D A + ++T Sbjct: 8 HISVLKKEAIDFLKIKPEGIYVDATLGQCGHTIEIANLLQQGFLYSFDQDVEACTNAKKT 67 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + + + + F K +DG++FDLG+SS QID RGFS+ + PLDM Sbjct: 68 LSPHLP-IEIIHSIFRIXSPISTTKSFSLDGILFDLGLSSCQIDNPQRGFSYLHNTPLDM 126 Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM+ + I+A ++N + L I + GE K AS + I+K+R P QT+ DL S+ Sbjct: 127 RMNINQTITAQYILNNYSFAQLKNIFKLYGEVKNASLVVSEIIKQR---PLQTSYDLVSI 183 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 + F + H A + FQALRI VN E+E L Q L + LK ++V+SFHSLE Sbjct: 184 TDR---FCNLQKGHSAKKIFQALRIEVNQELESLKQALEQSLDLLKPNARIVVISFHSLE 240 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAV-FQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 DR++K FF S V+ + +P P ITKK +P++E++ N RS SAKLR Sbjct: 241 DRIIKHFFKKHSTFVLPKK--LPIAIIPQTPLSIITKKAFLPSEEEMQNNSRSISAKLRV 298 Query: 314 GMRTV 318 ++ V Sbjct: 299 AVKNV 303 >gi|291288111|ref|YP_003504927.1| S-adenosyl-methyltransferase MraW [Denitrovibrio acetiphilus DSM 12809] gi|290885271|gb|ADD68971.1| S-adenosyl-methyltransferase MraW [Denitrovibrio acetiphilus DSM 12809] Length = 308 Score = 162 bits (411), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 105/306 (34%), Positives = 168/306 (54%), Gaps = 10/306 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQE 76 H+PV++ +V+ L P + LD T G GG+S + + + ++ LDRD AV+ +E Sbjct: 3 HIPVMIREVLKYLPVDPDGITLDMTGGGGGHSAAMLEKISLKGRLVILDRDLDAVARLKE 62 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + ++ + FS + + G V V+ D GVS + +RGFSF+ GPL Sbjct: 63 RFKGTP-NVTIAHSNFSDFDRVLGELGISSVTSVLADFGVSLYHLKVAERGFSFRSEGPL 121 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +SA+DVVN + ++L+ I+ GEE A IA AI + R+ +TT L+ Sbjct: 122 DMRMNQDDTLSAADVVNSYSRENLSSIIKKYGEENFAWNIAGAIERAREVEKIETTTRLA 181 Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++ V ++ I+PAT++FQALRIFVN+E++ + + L E + GG + +SFH Sbjct: 182 EIVASAVPRKAQKPGINPATKTFQALRIFVNSELDSIEEMLGKLENYVDEGGRVAFISFH 241 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPA-VFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK F + + + N F+ IT+K + P ++++ N SRSAK Sbjct: 242 SLEDRIVKDAFREFEKECVCPPELPVCNCSKVRTFRQITRKPLEPREDELEMNPLSRSAK 301 Query: 311 LRAGMR 316 +R R Sbjct: 302 MRVAER 307 >gi|313891489|ref|ZP_07825102.1| S-adenosyl-methyltransferase MraW [Dialister microaerophilus UPII 345-E] gi|313120066|gb|EFR43245.1| S-adenosyl-methyltransferase MraW [Dialister microaerophilus UPII 345-E] Length = 310 Score = 162 bits (411), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 105/309 (33%), Positives = 171/309 (55%), Gaps = 20/309 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQE 76 HV VL ++I+ + V D T G G+ + G+ +I +D+D A+ + Sbjct: 5 HVTVLRREMISAVLTDKNGVYADCTLGGAGHLSLLSEKVENGALLIGIDQDLDALKAAEL 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 M+D + + FS +++ + +K ++G +FDLGVSS Q+D +RGFS+ G L Sbjct: 65 RMKDCTCNLNFVHSNFSNIKNILSEKNLNKINGFIFDLGVSSYQLDEANRGFSYMHEGRL 124 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ S ++A DVVN+ + + + I+ GEE+ A RIA IV R++ +TT +L Sbjct: 125 DMRMNQNSELTAHDVVNKYSEEKIAFIIKEYGEERWAKRIAEFIVDYRKNKIIETTGELV 184 Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 S+I+ + ++ N HPA R+FQA+RI VNNE+ + + L +GG + +++FH Sbjct: 185 SIIKAAIPLGARKNGPHPAKRTFQAIRIEVNNELGIIESTINDCVDCLVSGGRIGIITFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV------VVPTQEDVAFNRR 305 SLEDR+VK+ F K +A + + P P + +K+ + PT E++A N R Sbjct: 245 SLEDRIVKRTF-----KNLAKQCICPP-EFPLCVCNHQRKIKLLGNGIRPTDEEIAENPR 298 Query: 306 SRSAKLRAG 314 +RSA LR Sbjct: 299 ARSAILRVA 307 >gi|325280032|ref|YP_004252574.1| Ribosomal RNA small subunit methyltransferase H [Odoribacter splanchnicus DSM 20712] gi|324311841|gb|ADY32394.1| Ribosomal RNA small subunit methyltransferase H [Odoribacter splanchnicus DSM 20712] Length = 302 Score = 162 bits (411), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 104/300 (34%), Positives = 167/300 (55%), Gaps = 15/300 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQE 76 HVPVLL++ + L+ G V LD TFG GG+S K ++ D+D A++ E Sbjct: 5 HVPVLLKESVDGLDIRQGGVYLDLTFGGGGHSGEILKRLDAEGCLLGFDQDEDALANVPE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 R F F L++++ G DG++ DLGVSS + D RGFSF+ L Sbjct: 65 DDR-----FIFVNHNFRYLRNFMRYYGYEEADGILADLGVSSHEFDEAGRGFSFRFEAEL 119 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ S ++A+ V+N + + LT I GE + A R+ IVK R + +T++ Sbjct: 120 DMRMNQRSKLTAATVLNTYDAEQLTAIFRNYGEVENARRLVDLIVKARANQEIKTSEAFY 179 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I + K + + +QALRI VN E+E L + ++ A + LK GG L+++++HS Sbjct: 180 QIILPCIPKLKEKKY--LAKVYQALRIEVNGELEALEEMMQQAMEVLKPGGRLVIITYHS 237 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK F + + + + ++ + H F+ + +KV+VP++E++ N R+RSAKLR Sbjct: 238 LEDRIVKNFLKAGNAEGKLEKDLVFGHVHHN-FELVNRKVIVPSEEEIVRNPRARSAKLR 296 >gi|326406411|gb|ADZ63482.1| S-adenosyl-methyltransferase MraW [Lactococcus lactis subsp. lactis CV56] Length = 317 Score = 162 bits (411), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 106/307 (34%), Positives = 168/307 (54%), Gaps = 11/307 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H VLL + + +L P + +DAT G G+S +N + + D+D A + Sbjct: 9 HDTVLLHETVDMLEVKPNGIYVDATLGGAGHSEYLLSKLTNGHLYSFDQDETAHENAKVR 68 Query: 78 MRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + +++ +L ++ F L+ + + GV DG+++DLGVSS Q D RGFS++K Sbjct: 69 LSEQLAEDKVTLIKSNFRYLKSALAELGVTKIDGILYDLGVSSPQFDDSQRGFSYKKEAR 128 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + +SA +VVN + L RI GE+K + +IA I + R+ P +TT +L Sbjct: 129 LDMRMDQNQTLSAYEVVNDYPYETLVRIFFRYGEDKFSKQIARKIEQARKIKPIETTIEL 188 Query: 192 SSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 + LI+ + + + HPA R FQA+RI VN+E+ + + A LK G + V++F Sbjct: 189 ADLIKSALPQKELKKKGHPAKRIFQAIRIEVNDELGAAEESIEQAIDLLKVDGRISVITF 248 Query: 251 HSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDRL K F S V M+P + A + I +K V+ ++E++ FN R+ SA Sbjct: 249 HSLEDRLTKTIFKEYSTVNVPKGLPMLPKDME-AKLKLINRKPVLASEEELEFNNRAHSA 307 Query: 310 KLRAGMR 316 KLR + Sbjct: 308 KLRVAQK 314 >gi|238924611|ref|YP_002938127.1| S-adenosyl-methyltransferase MraW [Eubacterium rectale ATCC 33656] gi|263433305|sp|C4ZD30|RSMH2_EUBR3 RecName: Full=Ribosomal RNA small subunit methyltransferase H 2; AltName: Full=16S rRNA m(4)C1402 methyltransferase 2; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH 2 gi|238876286|gb|ACR75993.1| S-adenosyl-methyltransferase MraW [Eubacterium rectale ATCC 33656] Length = 314 Score = 162 bits (411), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 99/303 (32%), Positives = 168/303 (55%), Gaps = 10/303 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H VL ++ I LN P + +D T G G+S K S+ +I +D+D A+ E Sbjct: 5 HYSVLRDETIENLNIRPDGIYVDGTLGGAGHSYEIAKRLSDKGRLIGIDQDADAIKAAGE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQ-KSGP 132 + ++ ++ ++ ++ +S +++ + G VDG++ DLGVSS Q+D RGF+++ + P Sbjct: 65 RLAEFGDRVTIVRSNYSDMKNVLHSLGIEKVDGIMLDLGVSSFQLDTPKRGFTYRSEDAP 124 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + ++A D+VN + DL RI+ GE+K A IA IV RQ TT +L Sbjct: 125 LDMRMDDRNALTARDIVNTYSENDLYRIIRDYGEDKFAKNIAKHIVAARQKQEITTTGEL 184 Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 + +I+ + + HP+ R++QA+RI +N+E++ L L L GG + +++F Sbjct: 185 NEIIKAAIPQKVRATGGHPSKRTYQAIRIELNHELDVLRDNLDDMIDLLNPGGRICIITF 244 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK F + + + IT+K ++P+++++ N RS+SA Sbjct: 245 HSLEDRIVKSNFKKNENPCTCPPSFPVCVCGNKSKGTVITRKPILPSEKELEENSRSKSA 304 Query: 310 KLR 312 KLR Sbjct: 305 KLR 307 >gi|260172400|ref|ZP_05758812.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. D2] Length = 304 Score = 162 bits (410), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 104/300 (34%), Positives = 162/300 (54%), Gaps = 16/300 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HVPVLL++ + +N P +D TFG G+SR G ++ D+D + Sbjct: 9 HVPVLLKESVDGMNIQPDGTYVDVTFGGAGHSREILSRLGEGGRLLGFDQDE---DAERN 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + D F ++ F L +++ VD ++ DLGVSS D +RGFSF+ G L Sbjct: 66 IVND--THFIFVRSNFRYLHNFLRYHNIEQVDAILADLGVSSHHFDDSERGFSFRFDGAL 123 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +G++A+D+VN + + L IL + GE K + ++A IVK R +T + Sbjct: 124 DMRMNKRAGMTAADIVNTYDEERLANILYLYGELKNSRKLASVIVKARSGQNIRTIGEFL 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +++ F + + FQALRI VN E+E L + L +A +ALK GG L+V+++HS Sbjct: 184 EVVKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLLAATEALKPGGRLVVITYHS 241 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK + + + A + P F+ + KV+VP + ++ N RSRSAKLR Sbjct: 242 LEDRMVKNIMKTGNVEGKAETDFFGNLQTP--FRLVNNKVIVPDEAEIERNPRSRSAKLR 299 >gi|153809202|ref|ZP_01961870.1| hypothetical protein BACCAC_03513 [Bacteroides caccae ATCC 43185] gi|149128178|gb|EDM19398.1| hypothetical protein BACCAC_03513 [Bacteroides caccae ATCC 43185] Length = 304 Score = 162 bits (410), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 104/300 (34%), Positives = 161/300 (53%), Gaps = 16/300 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HVPVLL++ + +N P +D TFG G+SR G ++ D+D + Sbjct: 9 HVPVLLKESVDGMNIRPDGTYVDVTFGGAGHSREILSRLGEGGRLLGFDQDE---DAERN 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + D F+ ++ F L +++ VD ++ DLGVSS D +RGFSF+ G L Sbjct: 66 IVND--PHFTFVRSNFRYLHNFLRYHNIEQVDAILADLGVSSHHFDDSERGFSFRFDGDL 123 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +G++A+D++N + L I + GE K + ++A IVK R +T + Sbjct: 124 DMRMNKRAGLTAADILNTYEEERLADIFYLYGELKNSRKLASVIVKARNGQQIRTIGEFL 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ F + + FQALRI VN E+E L + L +A +ALK GG L+V+++HS Sbjct: 184 EIIKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLLAATEALKPGGRLVVITYHS 241 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK + + + A + P F+ + KV+VP Q ++ N RSRSAKLR Sbjct: 242 LEDRMVKNIMKTGNVEGKAESDFFGNLQTP--FRLVNNKVIVPDQAEIERNPRSRSAKLR 299 >gi|300774439|ref|ZP_07084302.1| S-adenosyl-methyltransferase MraW [Chryseobacterium gleum ATCC 35910] gi|300506254|gb|EFK37389.1| S-adenosyl-methyltransferase MraW [Chryseobacterium gleum ATCC 35910] Length = 297 Score = 162 bits (410), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 106/305 (34%), Positives = 168/305 (55%), Gaps = 17/305 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H PVLL++ + L P + +D TFG GG+SR S+ + + D+D A+ + Sbjct: 3 HNPVLLKQSVDDLVTNPDGIYVDCTFGGGGHSREILSRLSDKGRLFSFDQDLDAL---KN 59 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 T+ D +F+L F L++ + GV DG++ DLGVSS Q D DRGFS + + PL Sbjct: 60 TIDD--PRFTLVNQNFRFLENSLLMYGVSQVDGILADLGVSSHQFDEADRGFSTRSNAPL 117 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ + A V+N+ ++L + GE ++A ++A IV R++ +TT+DL Sbjct: 118 DMRMNVMQNLDAKRVINEYEEEELADLFYHYGELREARKLAREIVHHRKTKSIETTEDLK 177 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 L + K N+ + + FQA+RI VN E+E L + L A LK G L+V+S+HS Sbjct: 178 KLFS-YIPPHKVNKFY--AQLFQAIRIEVNQELEVLKEMLVQAYNVLKPEGRLVVISYHS 234 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDRLVK+F ++G + F+ + K ++P +++ N R+RSAK+R Sbjct: 235 LEDRLVKRFL--KNGMFEGEPERDIYGNYKKAFELVKSKAIIPDDKEIEENSRARSAKMR 292 Query: 313 AGMRT 317 G++ Sbjct: 293 TGIKV 297 >gi|302770288|ref|XP_002968563.1| hypothetical protein SELMODRAFT_89216 [Selaginella moellendorffii] gi|300164207|gb|EFJ30817.1| hypothetical protein SELMODRAFT_89216 [Selaginella moellendorffii] Length = 373 Score = 162 bits (410), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 106/310 (34%), Positives = 159/310 (51%), Gaps = 26/310 (8%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCGQE 76 H PVL+ + + K LD T GAGG++ + + + +D DP A+ ++ Sbjct: 66 HTPVLVRQFLEHFEGRSVKTFLDCTVGAGGHAFEIIQAHPELETFVGMDVDPCALKLARQ 125 Query: 77 TMRDYK---EQFSLFQATFSQ----LQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFS 126 + D + LF A F L++ P+ +G DG++ DLG+SSMQ+D +RGFS Sbjct: 126 RLSDLSGSMAKVDLFHANFKNMKKDLKERNPELLERGFDGILLDLGLSSMQVDAPERGFS 185 Query: 127 FQKSGPLDMRMSCS---GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 + GPLDMRM S G++A + N + ++ RIL GEE + +A IV R + Sbjct: 186 YYLDGPLDMRMDSSDVLGLTAEAICNNWSAAEIGRILREYGEEMRWKFLASRIVDARLNG 245 Query: 184 PFQTTQDLSSLIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 +TT+DL+S++ + R HPA R+FQALRI VN+E++ L + A L G Sbjct: 246 GIKTTKDLASVVGGRFTSGRFKRARHPAARTFQALRIAVNDELKSLRSAIGQASSCLAPG 305 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G L V+SFHSLEDR+VK F S + + F +T + ++ Sbjct: 306 GRLAVISFHSLEDRIVKYQFKELS---------LVFDKVDLAFMLLTTSPITADAAEIEK 356 Query: 303 NRRSRSAKLR 312 N R RSAK+R Sbjct: 357 NSRCRSAKMR 366 >gi|291525276|emb|CBK90863.1| S-adenosyl-methyltransferase MraW [Eubacterium rectale DSM 17629] Length = 314 Score = 162 bits (410), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 99/303 (32%), Positives = 168/303 (55%), Gaps = 10/303 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H VL ++ I LN P + +D T G G+S K S+ +I +D+D A+ E Sbjct: 5 HYSVLRDETIENLNIRPDGIYVDGTLGGAGHSYEIAKRLSDKGRLIGIDQDADAIKAAGE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQ-KSGP 132 + ++ ++ ++ ++ +S +++ + G VDG++ DLGVSS Q+D RGF+++ + P Sbjct: 65 RLAEFGDRVTIVRSNYSDMKNVLHSLGIEKVDGIMLDLGVSSFQLDTPKRGFTYRSEDAP 124 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + ++A D+VN + DL RI+ GE+K A IA IV RQ TT +L Sbjct: 125 LDMRMDDRNALTARDIVNTYSENDLYRIIRDYGEDKFAKNIAKHIVAARQKQEITTTGEL 184 Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 + +I+ + + HP+ R++QA+RI +N+E++ L L L GG + +++F Sbjct: 185 NEIIKAAIPQKVRATGGHPSKRTYQAIRIELNHELDVLRDSLDDMIDLLNPGGRICIITF 244 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK F + + + IT+K ++P+++++ N RS+SA Sbjct: 245 HSLEDRIVKSNFKKNENPCTCPPSFPVCVCGNKSKGTVITRKPILPSEKELEENSRSKSA 304 Query: 310 KLR 312 KLR Sbjct: 305 KLR 307 >gi|226953729|ref|ZP_03824193.1| S-adenosylmethionine methyltransferase [Acinetobacter sp. ATCC 27244] gi|294651784|ref|ZP_06729082.1| S-adenosylmethionine methyltransferase [Acinetobacter haemolyticus ATCC 19194] gi|226835517|gb|EEH67900.1| S-adenosylmethionine methyltransferase [Acinetobacter sp. ATCC 27244] gi|292822341|gb|EFF81246.1| S-adenosylmethionine methyltransferase [Acinetobacter haemolyticus ATCC 19194] Length = 307 Score = 162 bits (410), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 112/308 (36%), Positives = 171/308 (55%), Gaps = 20/308 (6%) Query: 20 HVPVLL-EKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQ 75 H+ VLL E V +L V +DATFG GG+++ K+ N V A D+DP A+ Sbjct: 3 HISVLLHETVDGVLAGRDTGVYVDATFGRGGHTKLLLSKLDPNARVYAFDKDPQALEVAA 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + +F + A+F+ +Q + G VDG++ DLGVSS Q+D +RGFSF + GP Sbjct: 63 Q-LEQEDSRFKIIHASFADIQAELAKIGIIEVDGIMADLGVSSPQLDQAERGFSFMQDGP 121 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G++A++ + + + L I+ GEE+ + RIA AI + + TT L Sbjct: 122 LDMRMDNSQGLTAAEWLLEIEEEKLANIIYQYGEERYSRRIAKAI---KLAGEITTTAQL 178 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ K + HPATR+FQA+RI +N E++++ L A + LK G L V+SFH Sbjct: 179 AEIV-KVAHPKWEKHKHPATRTFQAIRIAINKELDDIEIFLPQAVELLKPTGQLAVISFH 237 Query: 252 SLEDRLVKKFFASRSGKVMAVRH---MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SLEDRL+K+F S +A H M + + +++ + ++ +V N RSRS Sbjct: 238 SLEDRLIKQFIQKES--TLAEDHGWGMPQAQIDTRRLKKVSR--IRASEAEVKANPRSRS 293 Query: 309 AKLRAGMR 316 A LR R Sbjct: 294 AWLRVAER 301 >gi|15672847|ref|NP_267021.1| hypothetical protein L87561 [Lactococcus lactis subsp. lactis Il1403] gi|20139138|sp|Q9CH73|RSMH_LACLA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|12723794|gb|AAK04963.1|AE006321_1 hypothetical protein L87561 [Lactococcus lactis subsp. lactis Il1403] Length = 317 Score = 162 bits (410), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 106/307 (34%), Positives = 168/307 (54%), Gaps = 11/307 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H VLL + + +L P + +DAT G G+S +N + + D+D A + Sbjct: 9 HDTVLLHETVDMLEVKPNGIYVDATLGGAGHSEYLLSKLTNGHLYSFDQDETAHENAKVR 68 Query: 78 MRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + +++ +L ++ F L+ + + GV DG+++DLGVSS Q D RGFS++K Sbjct: 69 LSEQLAEDKVTLIKSNFRYLKSALAELGVTKIDGILYDLGVSSPQFDDSQRGFSYKKEAR 128 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + +SA +VVN + L RI GE+K + +IA I + R+ P +TT +L Sbjct: 129 LDMRMDQNQTLSAYEVVNDYPYEALVRIFFRYGEDKFSKQIARKIEQARKIKPIETTIEL 188 Query: 192 SSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 + LI+ + + + HPA R FQA+RI VN+E+ + + A LK G + V++F Sbjct: 189 ADLIKSALPQKELKKKGHPAKRIFQAIRIEVNDELGAAEESIEQAIDLLKVDGRISVITF 248 Query: 251 HSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDRL K F S V M+P + A + I +K V+ ++E++ FN R+ SA Sbjct: 249 HSLEDRLTKTIFKEYSTVNVPKGLPMLPKDME-AKLKLINRKPVLASEEELEFNNRAHSA 307 Query: 310 KLRAGMR 316 KLR + Sbjct: 308 KLRVAQK 314 >gi|332976677|gb|EGK13517.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Psychrobacter sp. 1501(2011)] Length = 347 Score = 162 bits (410), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 111/321 (34%), Positives = 172/321 (53%), Gaps = 30/321 (9%) Query: 20 HVPVLL-EKVIALLNPAPGK--------------VILDATFGAGGYSRSFCKMGSN---V 61 H VLL E V A+L P K + +DATFG GG+S+ + S+ + Sbjct: 21 HETVLLYETVAAVLGKNPTKKSSKATDSDPKVSGIFVDATFGRGGHSKLLLESLSDDGQL 80 Query: 62 IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQI 118 D+DP A++ +E + + ++ +F+ + + + G V+G++ DLGVSS Q+ Sbjct: 81 FVFDKDPEAIAVAEEIAKS-DNRVTVVHDSFANITHCLNEHGITQVNGIMADLGVSSPQL 139 Query: 119 DCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177 D G RGFSF + G +DMRM S G S + + + ++L +L GEE+ + RIA AI Sbjct: 140 DDGSRGFSFMRDGAIDMRMDTSRGQSVGEWLETVDEEELANVLYDFGEERHSRRIARAI- 198 Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 +Q + +T +L+ +I K + HPAT+SFQA+RIF+NNE+ ++ L+ + Sbjct: 199 --KQMERYTSTLELAEVI-KQAHPKWQKGKHPATQSFQAMRIFINNELGDIDSFLQQSLT 255 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296 L G L V+SFHSLEDR +K+F S G+ ++ P F K + P+ Sbjct: 256 LLAPEGQLAVISFHSLEDRRIKQFLQRHSRGQYPEDENLPMPPVRPRYFSK--PKRIAPS 313 Query: 297 QEDVAFNRRSRSAKLRAGMRT 317 + +V+ N RSRSA LR RT Sbjct: 314 KAEVSVNNRSRSAWLRVATRT 334 >gi|269469017|gb|EEZ80581.1| S-adenosylmethionine-dependent methyltransferase [uncultured SUP05 cluster bacterium] Length = 233 Score = 162 bits (410), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 90/217 (41%), Positives = 133/217 (61%), Gaps = 7/217 (3%) Query: 104 VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM-SCSGISASDVVNQANVKDLTRILGI 162 +DG++ DLGVSS Q+D RGFSF GPLDMRM G+SA+ + AN ++ +L Sbjct: 14 IDGILMDLGVSSPQLDNAQRGFSFNHDGPLDMRMDQTQGMSAAQWLTSANETEIADVLYQ 73 Query: 163 LGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVN 222 GEE+++ RIA AI + +Q TT L+++I + KN HPATRSFQA+RIF+N Sbjct: 74 YGEERKSRRIASAIKRYQQDKSIDTTLQLANIIASVIKTQKNK--HPATRSFQAIRIFIN 131 Query: 223 NEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNA 280 E+++L++ L + L GG L+V+SFHS+EDR+VK+F S + A + + + S Sbjct: 132 QELKQLSETLDQIIELLACGGRLVVISFHSIEDRIVKQFIQKHSRQKQAPKGLPVMDSEF 191 Query: 281 HPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 + + KK ++E++ N+RSRSA LR RT Sbjct: 192 KKTALKDLGKKFA--SKEELQTNKRSRSAILRTAQRT 226 >gi|146299563|ref|YP_001194154.1| S-adenosyl-methyltransferase MraW [Flavobacterium johnsoniae UW101] gi|189082215|sp|A5FIX6|RSMH_FLAJ1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|146153981|gb|ABQ04835.1| S-adenosyl-methyltransferase MraW [Flavobacterium johnsoniae UW101] Length = 302 Score = 162 bits (410), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 109/304 (35%), Positives = 169/304 (55%), Gaps = 17/304 (5%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVS 72 T+ H PVLL + L+ P + +D TFG GG+S+ + +G N + A D+D A++ Sbjct: 4 TMEYHNPVLLHPTVDGLDIKPDGIYVDVTFGGGGHSKEILRRLGPNGKLFAFDQDEDALA 63 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK 129 E+F+L F ++ ++ G VDG++ DLGVSS Q D +RGFS + Sbjct: 64 NALPD-----ERFTLINENFRFIKRFLRFHGIKAVDGILADLGVSSHQFDVPERGFSTRF 118 Query: 130 SGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRMS + ++A VVN+ +DL R+ GE K A +A IV+ R P +TT Sbjct: 119 DAELDMRMSQKNDLNAYRVVNEYEEQDLRRVFFDYGELKNAPVLARTIVEARHHRPIKTT 178 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +++K Y + R + +QA+RI VN E++ L + + + + LK GG V+ Sbjct: 179 DELKEVLKK--YLPEKVRNKILAQIYQAIRIEVNQEMDVLKEFIEQSLEILKPGGRFSVI 236 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 S+HSLEDRLVK+F + + R + + P F++I K++VP E++ N R+RS Sbjct: 237 SYHSLEDRLVKRFIKNGMFEGEPERDFYGNFSVP--FKTIG-KLIVPDDEEIKINNRARS 293 Query: 309 AKLR 312 AKLR Sbjct: 294 AKLR 297 >gi|325182849|emb|CCA17304.1| SadenosylLmethioninedependent methyltransferase mraWlike protein putative [Albugo laibachii Nc14] Length = 365 Score = 162 bits (410), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 109/333 (32%), Positives = 177/333 (53%), Gaps = 36/333 (10%) Query: 20 HVPVLLEKVIALLNPAPGKV---ILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCG 74 HVPVL++ V LL KV +DAT G G+++ + N+ + +DRDP +S Sbjct: 31 HVPVLIKSVTKLLVSEEMKVPRYFVDATVGCAGHAQKILESDPNIRMLCIDRDPEVLSIA 90 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + ++ + + +++ L++++ G V G++ DLGV+S+ D +RGFS+ + Sbjct: 91 TDNLKKFTSRVKFVNGSYADLENHLKVSGFPSEVSGILVDLGVNSLHYDKPERGFSWLRD 150 Query: 131 GPLDMRMSCSGIS---ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP--- 184 GPL+MR S + A+D++ ++ +LTRI GE K A A AIV++R++A Sbjct: 151 GPLNMRFDESDSTIDCAADILQTSSEVELTRIFREYGELKCAKEYAKAIVRKRETAAPGS 210 Query: 185 --FQTTQDLSSLIQKTV-----------YFSKNNR---IHPATRSFQALRIFVNNEIEEL 228 F+TT L I++ + SK NR P T FQALRI VN E+ + Sbjct: 211 RAFETTFHLRDAIEEVAAKWRPKRLSPSHASKTNRSSLARPITGCFQALRIQVNKELAHV 270 Query: 229 AQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFAS-----RSGKVMAVRHMIPSNAHPA 283 +G+ L G L+ ++FHSLEDR +K+ F + + G++ +++ + + Sbjct: 271 HEGVPVLANHLTPGARLVTIAFHSLEDRPIKQIFRTLAHELKDGQLDSLQCDLSKSLRGK 330 Query: 284 VFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 F+ I KKVV P +E+V N RSRSA+LR R Sbjct: 331 TFRFINKKVVKPCREEVVENPRSRSARLRCLER 363 >gi|260578096|ref|ZP_05846017.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Corynebacterium jeikeium ATCC 43734] gi|258603735|gb|EEW16991.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Corynebacterium jeikeium ATCC 43734] Length = 342 Score = 162 bits (410), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 102/325 (31%), Positives = 172/325 (52%), Gaps = 24/325 (7%) Query: 20 HVPVLLEKVIALL------NPAPGK-VILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70 H+PV+ ++++ L+ AP + VI+D T GAGG+S +F + V+ LDRDP A Sbjct: 7 HIPVMRDRMVELVGLGVNSENAPARPVIVDGTLGAGGHSEAFLDAFPHAIVVGLDRDPNA 66 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPD-------------KGVDGVVFDLGVSSMQ 117 ++ + + ++F +Q F + + + D G+ G +FDLGVSSMQ Sbjct: 67 LAEANARLARFGDRFVSYQTRFDGVTEALEDLMEQGKLPASVREHGISGFLFDLGVSSMQ 126 Query: 118 IDCGDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 +D +RGF++ PLDMRM S ++A++++N + ++ RIL G+E+ A +IA A+ Sbjct: 127 LDQPERGFAYAVDAPLDMRMDPSSPLTAAEILNTYSHGEIARILKTYGDERFAGKIASAV 186 Query: 177 VKRRQSAPFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 V+ R+ PF+ + L L+ T+ S+ HPA R+FQALR+ VN E+E L + Sbjct: 187 VREREKQPFENSARLVELLYATIPAASRRTGGHPAKRTFQALRVEVNAELESLENLIPEI 246 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295 + L G + + +S+ SLED++VKK S + A F+ T Sbjct: 247 SRWLHVGAVGVFMSYQSLEDKIVKKALVQLSTSKTPPGLPMELPGMEAEFELRTSGAEKA 306 Query: 296 TQEDVAFNRRSRSAKLRAGMRTVER 320 ++ ++ N R+ ++RA R +R Sbjct: 307 SEAEIEQNSRAAPVRVRAYSRVSDR 331 >gi|187251661|ref|YP_001876143.1| putative S-adenosylmethionine-dependent methyltransferase [Elusimicrobium minutum Pei191] gi|263447006|sp|B2KE60|RSMH_ELUMP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|186971821|gb|ACC98806.1| putative S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Elusimicrobium minutum Pei191] Length = 293 Score = 162 bits (410), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 109/299 (36%), Positives = 160/299 (53%), Gaps = 22/299 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H+PVL +++ +L V +D T G GG+++ + + +I D+D AV + Sbjct: 6 HIPVLTKEIGQMLITDINGVYIDGTLGLGGHTKYLLGLLGKEAKIIGFDKDYNAVKMAEA 65 Query: 77 TMRDYK-EQFSL-FQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + D + +L ++A L+D G DGV+ DLG+SS Q+D RGFSF GPLD Sbjct: 66 NVADGRLTAINLSYEAAPKVLKDLKIQGGADGVLLDLGLSSYQLDDASRGFSFMGGGPLD 125 Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MR SG +A+DVVN ++L RI GEE A A AIV+ R +TT +L++ Sbjct: 126 MRFDISGQKTAADVVNSYTAEELERIFANYGEETNARNAAAAIVRARVDKKIKTTSELAN 185 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 ++ + + H ATR FQALRI VN+E+ + + ++ + LK GG V++FHSL Sbjct: 186 ILAPV--LPRRGKTHGATRVFQALRIEVNDELGTVERFIKVLPEVLKPGGRAAVITFHSL 243 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 EDR+VK F S + + + K V+ P E+V NRRSRSAKLR Sbjct: 244 EDRIVKNIFKQMSAE--------------GEVKLVNKHVIEPEWEEVKNNRRSRSAKLR 288 >gi|325954324|ref|YP_004237984.1| ribosomal RNA small subunit methyltransferase H [Weeksella virosa DSM 16922] gi|323436942|gb|ADX67406.1| Ribosomal RNA small subunit methyltransferase H [Weeksella virosa DSM 16922] Length = 301 Score = 162 bits (410), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 106/304 (34%), Positives = 169/304 (55%), Gaps = 17/304 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H PVLL++ + L P V +D TFG GG+SR ++ N + A D+D Q Sbjct: 7 HNPVLLQESVDALVVNPSGVYVDCTFGGGGHSREILSRLDDNGRLYAFDQDE---DAKQN 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + D E+F L F L++ + +GV DG++ DLGVSS Q D +RGFS + G L Sbjct: 64 KIED--ERFELIDQNFRYLKNNLRFRGVKQVDGILADLGVSSHQFDTPERGFSIRFDGEL 121 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ S +SA ++VN+ + L I GE K + R+A I+K R + +T + L Sbjct: 122 DMRMNINSSLSAKNIVNEYDEDQLADIFYNYGELKGSRRLASEIIKARNNQSIETIEHLK 181 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 + + KN + FQALRI VN+E+ L + L + + ++ G L+V+S+HS Sbjct: 182 DIFS---FIPKNKENKFFAQVFQALRIEVNDEMAALREMLLQSGEIVRPEGRLVVISYHS 238 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDRLVK++ + + R + + + P F+ + KV+VP+++++ N R+RSAK+R Sbjct: 239 LEDRLVKRYMRNGVFEGEPERDIYGNWSAP--FKPLQSKVIVPSEKEIEENSRARSAKMR 296 Query: 313 AGMR 316 ++ Sbjct: 297 IAVK 300 >gi|68535817|ref|YP_250522.1| S-adenosyl-methyltransferase MraW [Corynebacterium jeikeium K411] gi|88909195|sp|Q4JWA3|RSMH_CORJK RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|68263416|emb|CAI36904.1| S-adenosyl-methyltransferase [Corynebacterium jeikeium K411] Length = 342 Score = 162 bits (409), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 102/325 (31%), Positives = 172/325 (52%), Gaps = 24/325 (7%) Query: 20 HVPVLLEKVIALL------NPAPGK-VILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70 H PV+ ++++ L+ AP + VI+D T GAGG+S +F + V+ LDRDP A Sbjct: 7 HTPVMRDRMVELVGLGVNSENAPARPVIVDGTLGAGGHSEAFLDAFPHAIVVGLDRDPNA 66 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPD-------------KGVDGVVFDLGVSSMQ 117 ++ + + ++F +Q F + + + D G+ G +FDLGVSSMQ Sbjct: 67 LAEANARLARFGDRFVSYQTRFDGVTEALEDLMEQGKLPASVREHGISGFLFDLGVSSMQ 126 Query: 118 IDCGDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 +D +RGF++ PLDMRM S ++A++++N + ++ RIL G+E+ A +IA A+ Sbjct: 127 LDQPERGFAYAVDAPLDMRMDPSSPLTAAEILNTYSHGEIARILKTYGDERFAGKIASAV 186 Query: 177 VKRRQSAPFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 V+ R+ PF+ + L L+ T+ S+ HPA R+FQALR+ VN E+E L + Sbjct: 187 VREREKQPFENSARLVELLYATIPAASRRTGGHPAKRTFQALRVEVNAELESLENLIPEI 246 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295 + L G + + +S+ SLED++VKK S + A F+ T+ Sbjct: 247 SRWLHVGAVGVFMSYQSLEDKIVKKALVQLSTSKTPPGLPMELPGMEAEFELRTRGAEKA 306 Query: 296 TQEDVAFNRRSRSAKLRAGMRTVER 320 ++ ++ N R+ ++RA R +R Sbjct: 307 SEAEIEQNSRAAPVRVRAYSRVSDR 331 >gi|88856505|ref|ZP_01131162.1| S-adenosyl-methyltransferase [marine actinobacterium PHSC20C1] gi|88814159|gb|EAR24024.1| S-adenosyl-methyltransferase [marine actinobacterium PHSC20C1] Length = 329 Score = 162 bits (409), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 100/303 (33%), Positives = 158/303 (52%), Gaps = 9/303 (2%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 H PVLLE+ I LL PA PG V++D T G G++ +F + ++ +DRD A++ Sbjct: 19 HTPVLLERSIELLAPALEAPGAVLVDGTLGMAGHAEAFLQRFPELTLVGIDRDEDALAIA 78 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + + + A + ++ + G V G+ FDLGVSS+Q+D +RGFS+ + Sbjct: 79 RRRLEPFASRTHFVHAVYEEIPTALASLGFPNVQGIFFDLGVSSLQLDRVERGFSYSQDA 138 Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S ++A ++ + +L RI G+EK A R A IV+ R+ P T+ Sbjct: 139 PLDMRMDASTPVTAEHILATYSELELRRIFYSYGDEKLAPRFASRIVQFREQQPLTTSAQ 198 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L LI + HPA R FQALRI VN E+ L + + +A +L GG ++V+++ Sbjct: 199 LVELIIAATPAAAQRAGHPAKRVFQALRIEVNQELSVLERAIPAAINSLALGGRMVVLAY 258 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK+ RS + H A + + + + + N R++ + Sbjct: 259 QSLEDRIVKRELQRRSRSTAPAGLPVELPEHKAELKLLVRGSEQASDAEQQTNPRAKPVR 318 Query: 311 LRA 313 LRA Sbjct: 319 LRA 321 >gi|225848381|ref|YP_002728544.1| S-adenosyl-methyltransferase MraW [Sulfurihydrogenibium azorense Az-Fu1] gi|262825703|sp|C1DTV7|RSMH_SULAA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|225643386|gb|ACN98436.1| S-adenosyl-methyltransferase MraW [Sulfurihydrogenibium azorense Az-Fu1] Length = 293 Score = 162 bits (409), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 109/306 (35%), Positives = 172/306 (56%), Gaps = 24/306 (7%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76 +H VL +V+ +DAT G GG+S K +I +D+D +A+ +E Sbjct: 3 EHYSVLHREVLEFTKDLKEGYFIDATVGGGGHSYLILKQNPKLKIIGVDKDDYALEVAKE 62 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++D++ +FSL +++F + V D V+ G++FD GVS Q+ RGFSFQ+ PL Sbjct: 63 RLKDFEGRFSLVKSSFKDIDKIVKDLDVNPVVGILFDFGVSHFQLKLP-RGFSFQREEPL 121 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S ++A VVN L I+ GEEK A RIA IV+ R+ +TT++L+ Sbjct: 122 DMRMDTSSELTAYYVVNYYPESRLFNIISKYGEEKFAKRIAKNIVEYRKKKKIETTKELA 181 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++ ++ + +++RIHPAT++FQA+RI VNNE+ E+ + L A + G++I +SFH Sbjct: 182 DIVYRSYPPNLRHSRIHPATKTFQAIRIEVNNELLEIEEALEKAIHIVSKEGIIITISFH 241 Query: 252 SLEDRLVKKFFAS-RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK F + K + + +TKK + P ++++ N SRSAK Sbjct: 242 SLEDRIVKNTFKKYKELKFLDI---------------LTKKPITPKEDEIRENPASRSAK 286 Query: 311 LRAGMR 316 +R R Sbjct: 287 MRVARR 292 >gi|206602140|gb|EDZ38622.1| S-adenosyl-methyltransferase (MraW) [Leptospirillum sp. Group II '5-way CG'] Length = 307 Score = 162 bits (409), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 108/301 (35%), Positives = 163/301 (54%), Gaps = 23/301 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQ-ETM 78 H+PV+ ++V+ +L+ PG+ +DAT G GG++R+ + G +VIA+DRDP A+ + E + Sbjct: 17 HLPVMTKEVLEVLDVQPGQWYVDATLGQGGHARAILEAGGSVIAIDRDPKAIEKARLELL 76 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVD--GVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + E+ L + + +++ GVD GVV D G S Q G SF GPLDMR Sbjct: 77 PVFGERLRLTCMNHAGMGEFLSSMGVDVSGVVLDSGWSMAQASESGAGLSFDAEGPLDMR 136 Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF-QTTQDLSSL 194 M + +A D++ + ++L I GEE A I+ A+V+ R +T ++L++ Sbjct: 137 MDPTLQRTAMDILEHQSAEELAEIFSNFGEEPLAMPISRALVQSRSRGRLPRTPKELAAF 196 Query: 195 IQKTVYFSKN---NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + VY+ K +R HPATR F ALRI VN EI+ L +G+ L +G L V++FH Sbjct: 197 V-SGVYYRKGYRRSRRHPATRVFMALRIEVNGEIDSLVRGVSGVRSILVSGARLAVLTFH 255 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 S EDR +K F G V + QS K V+P + ++ N RSRSAKL Sbjct: 256 SREDREIKHLF---RGWV--------REGWGRLLQS---KPVLPGKAEIEQNPRSRSAKL 301 Query: 312 R 312 R Sbjct: 302 R 302 >gi|255533217|ref|YP_003093589.1| S-adenosyl-methyltransferase MraW [Pedobacter heparinus DSM 2366] gi|255346201|gb|ACU05527.1| S-adenosyl-methyltransferase MraW [Pedobacter heparinus DSM 2366] Length = 301 Score = 162 bits (409), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 115/304 (37%), Positives = 159/304 (52%), Gaps = 16/304 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76 HVPVLL I LN P V +D TFG GG+S K +G +IA D+DP A + Sbjct: 6 HVPVLLAACIDGLNIRPEGVYVDVTFGGGGHSIEILKKLGDKGVLIAFDQDPDARRNEID 65 Query: 77 TMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 R F F+ L++ + K VDG++ DLGVSS Q + +RGFS + L Sbjct: 66 DPR-----FHFVDQNFAFLKNNLRLLGFKAVDGILADLGVSSHQFNEPERGFSTRFDAAL 120 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM G ++A++V+N L +I GI GE K A +A AIV R P T D Sbjct: 121 DMRMDKQGKLTAAEVLNTYTEDQLHKIFGIYGEVKNAKSLARAIVTGRVERPVLTLADFK 180 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++ + K ++ + FQALRI VN E+E L L +K GG L+V+S+HS Sbjct: 181 AVAAAHIPKGKEHKY--MAQVFQALRIEVNAEMEVLENFLSQTADVIKPGGRLVVMSYHS 238 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR VK F A + + + P F+++T+K +V E++ N R+RSAKLR Sbjct: 239 LEDRPVKNFIAKGKFRGEVDKDFFGNEQKP--FKAVTRKAIVADAEELERNSRARSAKLR 296 Query: 313 AGMR 316 G R Sbjct: 297 VGER 300 >gi|313203980|ref|YP_004042637.1| s-adenosyL-methyltransferase mraw [Paludibacter propionicigenes WB4] gi|312443296|gb|ADQ79652.1| S-adenosyl-methyltransferase MraW [Paludibacter propionicigenes WB4] Length = 319 Score = 162 bits (409), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 110/319 (34%), Positives = 171/319 (53%), Gaps = 16/319 (5%) Query: 1 MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGS 59 ++ K+ +S++ I H+P LL++ I LN P V +D TFG GG+SR K +G+ Sbjct: 3 IKKKNIDAVSTSGAEEIAYHIPALLDETITGLNIKPNGVYVDVTFGGGGHSREILKHLGA 62 Query: 60 N--VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVS 114 + ++ D+D A+ + T+ D +F ++ F +++++ G VDG++ DLGVS Sbjct: 63 DGKLLGFDQDEDAI---KNTIDD--PRFIFVRSNFRYMKNFLKYHGIDKVDGILADLGVS 117 Query: 115 SMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIA 173 S D +RGFSF+ G LDMRM+ S +A+ ++N + L + + GE + +IA Sbjct: 118 SHHFDEAERGFSFRFDGALDMRMNTKSSFTAAALLNTYTEEQLADVFYLYGELHNSRKIA 177 Query: 174 HAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLR 233 IV R SAPF +++ +F + R FQALRI VN E++ L L Sbjct: 178 RTIVAARNSAPFDRIFPFIEVLKP--FFGREKEKKDMARVFQALRIEVNKEMDVLKALLD 235 Query: 234 SAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV 293 + + L G L V+++HSLEDRLVK F RSG A +++ KV+ Sbjct: 236 QSIEVLNPQGRLAVLTYHSLEDRLVKNFI--RSGNFEGKLEKDFYGNILAPLKAVNTKVI 293 Query: 294 VPTQEDVAFNRRSRSAKLR 312 V + +VA N R+RSAKLR Sbjct: 294 VADEAEVARNPRARSAKLR 312 >gi|283780728|ref|YP_003371483.1| S-adenosyl-methyltransferase MraW [Pirellula staleyi DSM 6068] gi|283439181|gb|ADB17623.1| S-adenosyl-methyltransferase MraW [Pirellula staleyi DSM 6068] Length = 318 Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 110/318 (34%), Positives = 168/318 (52%), Gaps = 41/318 (12%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR----------SFCKMGSN-------VI 62 HV V+ ++I L P+ G ++LD T GAGG++R + K N V+ Sbjct: 20 HVSVMPREIIEWLRPSAGSILLDGTLGAGGHTRLLAEAIDAAENLAKSTGNTQFSPGYVL 79 Query: 63 ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQID 119 + DRD A++ + ++ L A F +L + + GV GV V DLG+SS Q+ Sbjct: 80 SSDRDEAALARAEVHLKGLP--VKLVHANFCELPSVLEELGVTGVQGCVLDLGLSSDQLA 137 Query: 120 CGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178 RGFSF +G LD+R S G A ++ + +++ I+ GEE+ + RIA I + Sbjct: 138 DDARGFSFDATGELDLRFDTSTGDPAWKLLEKLREEEIANIIYQFGEERLSRRIARKICE 197 Query: 179 RRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 +R P +T +L+ ++++ V + +I PATR+FQALRI VN E++ L + L + Sbjct: 198 QRIIKPIRTADELARIVRRCVPRG-DGKIDPATRTFQALRIAVNGELDALKKALEKIPEC 256 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L GG L ++SFHSLEDRLVK+ F S +R ++TKK + + Sbjct: 257 LAPGGRLAIISFHSLEDRLVKEAFRS------DLR-----------LNNLTKKPLTALDD 299 Query: 299 DVAFNRRSRSAKLRAGMR 316 ++A N RSRSAKLR R Sbjct: 300 ELASNPRSRSAKLRVAER 317 >gi|260642625|ref|ZP_05416656.2| S-adenosyl-methyltransferase MraW [Bacteroides finegoldii DSM 17565] gi|260621294|gb|EEX44165.1| S-adenosyl-methyltransferase MraW [Bacteroides finegoldii DSM 17565] Length = 309 Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 106/300 (35%), Positives = 161/300 (53%), Gaps = 16/300 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HVPVLL++ + +N P +D TFG G+SR G ++ D+D A + Sbjct: 14 HVPVLLKESVDGMNIRPDGTYVDVTFGGAGHSREILSRLGEGGRLLGFDQDEDA----ER 69 Query: 77 TMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + D F ++ F L + Y + VD ++ DLGVSS D +RGFSF+ G L Sbjct: 70 NIVD-DPHFIFVRSNFRYLHNFLRYHDIEQVDAILADLGVSSHHFDDSERGFSFRFDGDL 128 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +G++A+D+VN + L I + GE K + ++A IVK R +T + Sbjct: 129 DMRMNKRAGLTAADIVNTYEEERLANIFYLYGELKNSRKLASVIVKARNGQAIRTIGEFL 188 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ F + + FQALRI VN E+E L + L +A +ALK GG L+V+++HS Sbjct: 189 EVIKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLLAATEALKPGGRLVVITYHS 246 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK + + + A + P F+ + KV+VP + ++ N RSRSAKLR Sbjct: 247 LEDRMVKNIMKTGNVEGKAESDFFGNLNTP--FRLVNNKVIVPDETEIERNPRSRSAKLR 304 >gi|281491359|ref|YP_003353339.1| S-adenosyl-methyltransferase MraW [Lactococcus lactis subsp. lactis KF147] gi|281375100|gb|ADA64618.1| S-adenosyl-methyltransferase MraW [Lactococcus lactis subsp. lactis KF147] Length = 317 Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 105/307 (34%), Positives = 168/307 (54%), Gaps = 11/307 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77 H VLL + + +L P + +DAT G G+S ++ + D+D A + Sbjct: 9 HDTVLLHETVDMLEVKPNGIYVDATLGGAGHSEYLLSKLTDGHLYSFDQDETAHENAKVR 68 Query: 78 MRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + +++ +L ++ F L+ + + GV DG+++DLGVSS Q D RGFS++K Sbjct: 69 LSEQLAEDKVTLIKSNFRYLKSALAELGVTKIDGILYDLGVSSPQFDDSQRGFSYKKEAR 128 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + +SA +VVN+ + L RI GE+K + +IA I + R+ P +TT +L Sbjct: 129 LDMRMDQNQTLSAYEVVNEYPYEALVRIFFRYGEDKFSKQIARKIEQARKIKPIETTIEL 188 Query: 192 SSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 + LI+ + + + HPA R FQA+RI VN+E+ + + A LK G + V++F Sbjct: 189 ADLIKSALPQKELKKKGHPAKRIFQAIRIEVNDELGAAEESIEQAIDLLKVDGRISVITF 248 Query: 251 HSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDRL K F S V M+P + A + I +K V+ ++E++ FN R+ SA Sbjct: 249 HSLEDRLTKTIFKEYSTVNVPKGLPMLPKDME-AKLKLINRKPVLASEEELEFNNRAHSA 307 Query: 310 KLRAGMR 316 KLR + Sbjct: 308 KLRVAQK 314 >gi|78213939|ref|YP_382718.1| methyltransferase [Synechococcus sp. CC9605] gi|123577439|sp|Q3AGW9|RSMH_SYNSC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|78198398|gb|ABB36163.1| methyltransferase [Synechococcus sp. CC9605] Length = 294 Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 115/307 (37%), Positives = 167/307 (54%), Gaps = 32/307 (10%) Query: 20 HVPVLLEKVI--ALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQ 75 HVPVL + V+ A P P +++DAT G GG+S + G +I LD+D A + Sbjct: 6 HVPVLADAVLDAARRIPRPDGLLIDATLGGGGHSALLLEQHPGLRLIGLDQDATARAAAA 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 E + + ++ S+ F+ DYVP + V+ DLGVSS Q+D +RGFSF+ GPLDM Sbjct: 66 ERLASFGDRVSIVATNFA---DYVPPEPAVMVLADLGVSSPQLDVAERGFSFRLDGPLDM 122 Query: 136 RMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI---VKRRQSAPFQTTQD 190 RM+ G +A++++++ +L ++ GEE+ + RIA I +K R S + T Sbjct: 123 RMNAGGEGETAAELIDRLEENELADLIYGYGEERLSRRIARRIKADLKDRGS--YDGTAA 180 Query: 191 LSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ + S+ RIHPATR+FQALRI VN+E+ L + L+ A L+ GLL ++S Sbjct: 181 LAYAVAGCYPPKSRRGRIHPATRTFQALRIAVNDELGVLDRLLQQAPDWLEPDGLLGIIS 240 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDR VK F Q IT+K VV T+++ N R+RSA Sbjct: 241 FHSLEDRRVKTAFLRDE-----------------RLQRITRKPVVATEQEEEANPRTRSA 283 Query: 310 KLRAGMR 316 K R R Sbjct: 284 KWRVAQR 290 >gi|251772190|gb|EES52760.1| S-adenosyl-methyltransferase MraW [Leptospirillum ferrodiazotrophum] Length = 305 Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 111/303 (36%), Positives = 169/303 (55%), Gaps = 25/303 (8%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H PV+L + + L+ PG+ +DA G GG++R G +V+A+DRD AV +E + Sbjct: 12 HRPVMLAESMEWLDVRPGQWYVDANLGGGGHTREILARGGSVVAIDRDKGAVLAAREHLL 71 Query: 80 D-YKEQFSLFQATFSQLQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 Y ++ + + V +G V G++FDLG S++Q + +RG SF + GPLDMR Sbjct: 72 PLYPDRLRIIHGNNRNVASLVRQEGQHVSGILFDLGWSTIQGEDPERGLSFTEEGPLDMR 131 Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK-RRQSAPFQTTQDLSSL 194 + +A D++ + +L R+L G+E A+ IA A+V+ RR+ +TT L++ Sbjct: 132 LDTEQKETAEDLLESLSESELERVLS-EGDEPLAAPIARALVQARREGRLPRTTTALAAF 190 Query: 195 IQKTVYFSKN---NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA-GGLLIVVSF 250 + VY+ K +R HPATR F ALRI VN E E L + L A + L A GG LIV+SF Sbjct: 191 V-SGVYYRKGFRRSRRHPATRVFMALRIRVNREYENLEESLSGARELLSATGGRLIVLSF 249 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HS EDR+VK+ F G+ A F + ++ +VP E+V+ N R+RSA+ Sbjct: 250 HSGEDRIVKRCFRLWVGE------------GEAAF--LFRRSLVPGDEEVSLNPRARSAR 295 Query: 311 LRA 313 +R Sbjct: 296 MRG 298 >gi|86140630|ref|ZP_01059189.1| putative S-adenosyl-methyltransferase [Leeuwenhoekiella blandensis MED217] gi|85832572|gb|EAQ51021.1| putative S-adenosyl-methyltransferase [Leeuwenhoekiella blandensis MED217] Length = 298 Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 112/306 (36%), Positives = 166/306 (54%), Gaps = 29/306 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76 H PVLL++ + L P V +D TFG GG+SR K +G + A D+D A+ + Sbjct: 4 HNPVLLKETVDGLAIKPDGVYVDVTFGGGGHSREILKRLGDQGKLFAFDQDKDALDNALD 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 R F+L F + ++ G VDG++ D GVSS Q D +RGFS + L Sbjct: 64 DPR-----FTLINENFRFAKRFLRFYGAAKVDGILGDFGVSSHQFDVAERGFSTRFDAKL 118 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +SA VVN+ + +DL R+L GE + A ++A +V R+ +TT+DL Sbjct: 119 DMRMNQDDKLSAYHVVNEYSEEDLGRVLLQYGELRSAPKLARTLVSVRKDKAIETTEDLK 178 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +Q Y K + +QA+RI VN E+E L + L+ E+ LK GG L ++S+HS Sbjct: 179 QALQS--YLPKGREHKLLAQIYQAIRIEVNQELEVLKEFLQQTEEMLKPGGRLSLISYHS 236 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT---KKV---VVPTQEDVAFNRRS 306 LEDRLVK++ R+G + +F + T KKV +VP++E++ N R+ Sbjct: 237 LEDRLVKRYM--RNG-------LFEGEPEKDIFGNFTVPFKKVGGLIVPSKEEIKQNNRA 287 Query: 307 RSAKLR 312 RSAKLR Sbjct: 288 RSAKLR 293 >gi|203284227|ref|YP_002221967.1| S-adenosyl-methyltransferase [Borrelia duttonii Ly] gi|263445883|sp|B5RLD2|RSMH_BORDL RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|201083670|gb|ACH93261.1| S-adenosyl-methyltransferase [Borrelia duttonii Ly] Length = 297 Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 106/313 (33%), Positives = 170/313 (54%), Gaps = 26/313 (8%) Query: 17 IGD--HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPF 69 +GD H+PVLLE VI L+ G V +D T G GG+S++ NVI ++RD Sbjct: 1 MGDIFHIPVLLEDVINLVETIYLDDGFVFVDCTLGEGGHSKAVLSKYQNINVIGIERDDV 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQL-QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 ++ +E++ ++ ++ S F Y + + ++ DLG+S G RGFSF Sbjct: 61 VLNRAKESLVEFSKRISYSNTWFDDFFCKYSLHRRFNFILADLGISMFHYKVGGRGFSFL 120 Query: 129 KSGPLDMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + LDMR+ S GISA D+VN + + L ++ LG E + RI AI++ R+ Q Sbjct: 121 EDEKLDMRLFPSDGGISAYDIVNTFDKEMLENLIYELGGEYYSRRIVKAILEYRKINKIQ 180 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T+++L +I K Y + +I+PAT++FQALRI+VN+E++ L + L L G+L Sbjct: 181 TSRELQRIICKA-YPNVKFKINPATKTFQALRIYVNDELDRLKRSLPLWIANLSKNGILA 239 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 +++FHSLED++VK+FF + + +TKK + + ++ +N S Sbjct: 240 IITFHSLEDKIVKEFFKGLTKDQYCI---------------LTKKPITSSFKEKQYNNAS 284 Query: 307 RSAKLRAGMRTVE 319 RSAKLRA + E Sbjct: 285 RSAKLRAVKKLYE 297 >gi|219684724|ref|ZP_03539667.1| S-adenosyl-methyltransferase MraW [Borrelia garinii PBr] gi|219672086|gb|EED29140.1| S-adenosyl-methyltransferase MraW [Borrelia garinii PBr] Length = 296 Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 100/302 (33%), Positives = 170/302 (56%), Gaps = 24/302 (7%) Query: 20 HVPVLLEKVIALLNPAPGK---VILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 H PVLL+ + L+ P K + +D+T G G ++++ + +++ ++RDP + Sbjct: 7 HFPVLLDAICKLIEDLPVKSDLIYIDSTLGEGAHAKAILEKYDFLSLVGIERDPQILERA 66 Query: 75 QETMRDYKEQFSLFQATFSQL-QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ + +KE+ + F F +Y + + ++ DLG+S +GFSF + PL Sbjct: 67 KQFLLVFKERITYFNDWFDNFFVNYPLNVKANFILVDLGISMFHYKGSKKGFSFLEDEPL 126 Query: 134 DMRMSCSGISAS--DVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 DMR+ S S S ++VN + DL ++ L E + RI+ AIV+ R+ +TT++L Sbjct: 127 DMRLCSSSCSISAAEIVNTFSKYDLESLIYDLSNEHYSRRISKAIVEYRKIKKIETTKEL 186 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++I K FSK +I+PAT++FQALRI+VN+E+ L + L + L G+L +++FH Sbjct: 187 QAVINKVYPFSKA-KINPATKTFQALRIYVNDELARLKRSLPLWIENLAKDGILAIITFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 S+EDR+VK FF S S + A I+KK ++P+ +++ N+ SRSAKL Sbjct: 246 SIEDRIVKDFFRSLSCDLYA---------------KISKKPIIPSFDEIKKNKPSRSAKL 290 Query: 312 RA 313 RA Sbjct: 291 RA 292 >gi|213961666|ref|ZP_03389932.1| S-adenosyl-methyltransferase MraW [Capnocytophaga sputigena Capno] gi|213955455|gb|EEB66771.1| S-adenosyl-methyltransferase MraW [Capnocytophaga sputigena Capno] Length = 304 Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 109/304 (35%), Positives = 160/304 (52%), Gaps = 17/304 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+PVLL++ + L P +D TFG GG+SR K N + A D+D A + Sbjct: 8 HIPVLLQQSVEGLAIKPNGTYVDVTFGGGGHSREILKHLGNEGRLFAFDQDTDAAANAIA 67 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 R F+L Q F L+ Y+ GV DGV+ D GVSS Q D +RGFS + G L Sbjct: 68 DDR-----FTLIQQNFKYLRQYLRFYGVTQVDGVLGDFGVSSHQFDVAERGFSTRFEGTL 122 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ + +SA ++VN+ + +DL+R+ GE K A IA AI+ R P Q +L Sbjct: 123 DMRMNQNATVSAKEIVNEYDEEDLSRLFFNYGELKNAKAIARAIINYRAQKPIQLGSELQ 182 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++ + K N++ + +QA+RI VN E+E L L +K GG + ++S+HS Sbjct: 183 EAVKSFLPKFKENKV--LAQIYQAIRIEVNGEMEALESFLLQLPDVVKLGGRISLISYHS 240 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR VK+F R G++ F+ + ++ PT ++A N R+RSAKLR Sbjct: 241 LEDRAVKRFI--RDGQLEGTPEKDWFGNVSVPFKKVG-GLITPTDSEIAMNNRARSAKLR 297 Query: 313 AGMR 316 R Sbjct: 298 IAER 301 >gi|296273435|ref|YP_003656066.1| S-adenosyl-methyltransferase MraW [Arcobacter nitrofigilis DSM 7299] gi|296097609|gb|ADG93559.1| S-adenosyl-methyltransferase MraW [Arcobacter nitrofigilis DSM 7299] Length = 300 Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 101/299 (33%), Positives = 161/299 (53%), Gaps = 12/299 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 H+PVL ++ + + I+D T G G+S K SNV I D+D A+ ++ Sbjct: 5 HIPVLYKETLGVFENIDSGYIIDCTLGYAGHSEGLLKQNSNVKLICNDQDNEALEFSKKR 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 + + + + + F + + + + G++ D+GVSS+Q+D DRGF F S LDMRM Sbjct: 65 LEPFLNRATFNKGNFETVLNSFKEYDIRGILADIGVSSLQLDKEDRGFGFD-SESLDMRM 123 Query: 138 SCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 + + AS VVN + +L R+ GE K+ ++A IV R PF + ++LS+ I Sbjct: 124 NQEQSLDASVVVNTYSQSELERVFKECGEVKEYKKVASLIVNNR---PFTSAKELSTFIA 180 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 K ++ K +H AT FQ +RI VN+E+ L + S E+ L+ ++SFHSLEDR Sbjct: 181 KNMHKGK---LHAATLPFQGIRIEVNDELGVLERLFDSIEELKPKNCLIAIISFHSLEDR 237 Query: 257 LVKKFFASRSGKVMAVRHMIPSNA--HPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 +VK +F S + ++ A+ + ITKK ++PT E++ N RSRS+KLR Sbjct: 238 IVKNYFKKWSKNCICPSDVMRCTCGNDNALGKIITKKPIIPTNEEIKVNPRSRSSKLRV 296 >gi|315639624|ref|ZP_07894764.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Enterococcus italicus DSM 15952] gi|315484585|gb|EFU75041.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Enterococcus italicus DSM 15952] Length = 318 Score = 160 bits (406), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 104/305 (34%), Positives = 170/305 (55%), Gaps = 13/305 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQE 76 H VL ++ + L P + +D T G G+S ++G + + A D+D A+ ++ Sbjct: 5 HYTVLKKETVEGLAIKPDGIYVDCTLGGAGHSEYLLSQLGPDGHLYAFDQDQKALDFAKQ 64 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++ + K Q + ++ F +L+ + + VDG+++DLGVSS Q+D +RGFS+ + Sbjct: 65 RLQSFVDKGQVTFIKSNFRELKSKLAELDVMKVDGILYDLGVSSPQLDEAERGFSYHQDA 124 Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S SA D+VN + +L +I GEEK + +IA I + R + P +TT + Sbjct: 125 PLDMRMDQSASFSAHDLVNTYSYNELVKIFFRYGEEKFSKQIAREIERVRANQPIETTSE 184 Query: 191 LSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I+ + ++ HPA R FQA+RI VN+E+ + + L A + L G + V++ Sbjct: 185 LVEIIKTAIPAPARRKGGHPAKRIFQAIRIAVNDELGAVEESLEQAIELLAIHGRISVIT 244 Query: 250 FHSLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 FHSLEDRLVK F S+ ++ +IP P + I +K + ++ ++ N RSR Sbjct: 245 FHSLEDRLVKNMFKEYSQVKELPPGLPVIPDEYQP-MLTVINRKPITASELELEENNRSR 303 Query: 308 SAKLR 312 SAKLR Sbjct: 304 SAKLR 308 >gi|124024959|ref|YP_001014075.1| S-adenosylmethionine-dependent methyltransferase [Prochlorococcus marinus str. NATL1A] gi|262824926|sp|A2C000|RSMH_PROM1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|123960027|gb|ABM74810.1| Predicted S-adenosylmethionine-dependent methyltransferase [Prochlorococcus marinus str. NATL1A] Length = 304 Score = 160 bits (406), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 112/308 (36%), Positives = 167/308 (54%), Gaps = 38/308 (12%) Query: 19 DHVPVLLEKVIALLNPAPGKV-----ILDATFGAGGYSRSFCKM--GSNVIALDRDPFAV 71 +HVPV+ +++I L P ++ I+DAT G GG+S + G +I LD+DP A Sbjct: 13 NHVPVMGKEIIQSLKELPSELTKQGLIIDATIGGGGHSAQILENFPGIKIIGLDQDPMAR 72 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + + + + F+ D+ D+ V+ DLGVSS Q+D RGFSF+ +G Sbjct: 73 EAASKKLIKFGTRIKIISTNFA---DFSLDEQAICVLADLGVSSHQLDEPSRGFSFRLNG 129 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTTQ 189 P+DMRM+ G SA++++ + ++L ++ LGEEK++ RIA I ++ P+ TQ Sbjct: 130 PIDMRMNPKEGSSAAELIETLSEQNLADLIYELGEEKRSRRIARKIKNDLAENGPYSGTQ 189 Query: 190 DLSSLIQ-----KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 DLS I K Y RIHP+TR+FQALRI VNNE+ L L A L GL Sbjct: 190 DLSYAIAGCFPPKQRY----GRIHPSTRTFQALRIAVNNELGSLESLLLKAPNWLLENGL 245 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 +V+SFHSLEDR VK F + + + ++KK + + E++ N Sbjct: 246 FMVMSFHSLEDRRVKSSFKTDN-----------------RLKVLSKKPIRASPEEIELNP 288 Query: 305 RSRSAKLR 312 RS+SAKLR Sbjct: 289 RSKSAKLR 296 >gi|298207891|ref|YP_003716070.1| S-adenosyl-methyltransferase mraW [Croceibacter atlanticus HTCC2559] gi|83850532|gb|EAP88400.1| S-adenosyl-methyltransferase mraW [Croceibacter atlanticus HTCC2559] Length = 298 Score = 160 bits (406), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 109/304 (35%), Positives = 164/304 (53%), Gaps = 17/304 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQE 76 H PVLL + + LN P V +D TFG GG+S+ ++G N + A D+D A+ E Sbjct: 4 HNPVLLHETVDGLNIKPDGVYVDVTFGGGGHSKEILNRLGPNGKLFAFDQDQDALENALE 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 R F+L F + +V +G VDG++ D GVSS Q D +RGFS + L Sbjct: 64 DDR-----FTLIPQNFRYAKRFVRVQGYKTVDGILGDFGVSSHQFDVAERGFSTRFDSRL 118 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ + +SA +VVN L ++L GE + A ++A AI R+ P +T++ L Sbjct: 119 DMRMNQNDALSAYEVVNTYEEGKLRQVLSQYGELRNAPKLARAIYGARKDTPIETSEHLK 178 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I + K +++ + +QA+RI VN E+E L + L+ E L GG L ++S+HS Sbjct: 179 EVINSFLPRGKEHKM--LAQIYQAIRIEVNQELEVLKEFLKQTEDMLTTGGRLSLISYHS 236 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDRLVK++ RSG F+ + K++VP +++A N R+RSAKLR Sbjct: 237 LEDRLVKRYI--RSGLFEGEPEKDFYGNIEVPFKKVG-KLIVPNAKEIATNNRARSAKLR 293 Query: 313 AGMR 316 R Sbjct: 294 VAER 297 >gi|219685637|ref|ZP_03540452.1| S-adenosyl-methyltransferase MraW [Borrelia garinii Far04] gi|219672825|gb|EED29849.1| S-adenosyl-methyltransferase MraW [Borrelia garinii Far04] Length = 296 Score = 160 bits (406), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 100/302 (33%), Positives = 170/302 (56%), Gaps = 24/302 (7%) Query: 20 HVPVLLEKVIALLNPAPGK---VILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 H PVLL+ + L+ P K + +D+T G G ++++ + +++ ++RDP + Sbjct: 7 HFPVLLDAICKLIEDLPVKSDLIYIDSTLGEGAHAKAILEKYDFLSLVGIERDPQILERA 66 Query: 75 QETMRDYKEQFSLFQATFSQL-QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ + +KE+ + F F +Y + + ++ DLG+S +GFSF + PL Sbjct: 67 KQFLLVFKERITYFNDWFDNFFVNYPLNVKANFILVDLGISMFHYKGSKKGFSFLEDEPL 126 Query: 134 DMRMSCSGISAS--DVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 DMR+ S S S ++VN + DL ++ L E + RI+ AIV+ R+ +TT++L Sbjct: 127 DMRLCSSSCSISAAEIVNTFSKYDLESLIYDLSNEHYSRRISKAIVEYRKIKKIETTKEL 186 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++I K FSK +I+PAT++FQALRI+VN+E+ L + L + L G+L +++FH Sbjct: 187 QAVINKVYPFSKA-KINPATKTFQALRIYVNDELARLKRSLPLWIENLAKDGILAIITFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 S+EDR+VK FF S S + A I+KK ++P+ +++ N+ SRSAKL Sbjct: 246 SIEDRIVKDFFRSLSCDLYA---------------RISKKPIIPSFDEIKKNKPSRSAKL 290 Query: 312 RA 313 RA Sbjct: 291 RA 292 >gi|297569458|ref|YP_003690802.1| S-adenosyl-methyltransferase MraW [Desulfurivibrio alkaliphilus AHT2] gi|296925373|gb|ADH86183.1| S-adenosyl-methyltransferase MraW [Desulfurivibrio alkaliphilus AHT2] Length = 303 Score = 160 bits (406), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 108/315 (34%), Positives = 163/315 (51%), Gaps = 33/315 (10%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H PV+ +V+ L PA G + +D G GG++ + + +I D D A++ + Sbjct: 5 HQPVMPAEVLFWLAPAAGGIYVDGNLGLGGHAAAILEQSGPSGRLIGFDWDQEALARARS 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC------GDRGFSF 127 + + ++ L F +L+ + + + DG++ DLG+SS+Q+D RGFSF Sbjct: 65 NLARFGDRVHLQPCNFIELEATLAELAISRIDGILLDLGLSSLQLDSSGEAAGAGRGFSF 124 Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 ++ PLDMRM ++A+D++ + +L I GEE+QA RIA +VK+RQ P Sbjct: 125 RRPEPLDMRMDRRQELTAADLLRDLSAAELADIFYYYGEERQARRIAGWLVKQRQQTPIV 184 Query: 187 TTQDLSSLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 TT L+ L+ V F N IH ATR FQALRI VN E+E L + L A L Sbjct: 185 TTVQLAELVAAAVPRRFHPRN-IHVATRVFQALRIAVNRELENLEKILAVAPSFLSPKAR 243 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 +V+SFHSLEDRLVK+ F R + + +T + + P + ++ N Sbjct: 244 FVVISFHSLEDRLVKRAF--REDPRLKI---------------LTTRPLQPQEAELQRNP 286 Query: 305 RSRSAKLRAGMRTVE 319 R+RSAKLR R E Sbjct: 287 RARSAKLRVAERREE 301 >gi|116073986|ref|ZP_01471248.1| methyltransferase [Synechococcus sp. RS9916] gi|116069291|gb|EAU75043.1| methyltransferase [Synechococcus sp. RS9916] Length = 305 Score = 160 bits (406), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 111/308 (36%), Positives = 160/308 (51%), Gaps = 31/308 (10%) Query: 20 HVPVLLEKVIALLNPAPGK-----VILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVS 72 HVPVL E ++ L +P + +DAT G G+S + I LD+DP A S Sbjct: 14 HVPVLAEPLLEALAASPESPWEKGLFIDATLGGAGHSALLLDRYPQLRLIGLDQDPTARS 73 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 Q + Y ++ + F+ DY P+ D V+ DLGVSS Q+D RGFSF+ GP Sbjct: 74 AAQVRLEPYGDRAEIVATNFA---DYQPEAPADLVLADLGVSSPQLDVAARGFSFRLDGP 130 Query: 133 LDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI-VKRRQSAPFQTTQ 189 LDMRM+ G +A++++ + + L ++ GEE+ + RIA I +++ + T Sbjct: 131 LDMRMNPQGGGETAAELIERLEEEPLADLIYAYGEERLSRRIARRIKADLKENGGYAGTA 190 Query: 190 DLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 DL+ + ++ RIHPATR+FQALRI VN+E+ L + L+ A L GG+L ++ Sbjct: 191 DLAYAVAGCYPPKARRGRIHPATRTFQALRIAVNDELGVLDRLLQQAPDWLNPGGVLAII 250 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDR VK F IT+K +V + + A N RSRS Sbjct: 251 SFHSLEDRRVKTAFLQDD-----------------RLARITRKPLVAAEAEEAANPRSRS 293 Query: 309 AKLRAGMR 316 AKLR R Sbjct: 294 AKLRLARR 301 >gi|51246756|ref|YP_066640.1| hypothetical protein DP2904 [Desulfotalea psychrophila LSv54] gi|54036176|sp|Q6AJ47|RSMH_DESPS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|50877793|emb|CAG37633.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54] Length = 295 Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 107/303 (35%), Positives = 168/303 (55%), Gaps = 29/303 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H+ VLLE+ + L PG + +D T G GG++ + + + V+A + D A+ +E Sbjct: 7 HISVLLEETMEFLCLQPGGIYVDGTMGLGGHTSAILERTAPDGRVVAFEWDENAIKASRE 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + Y E+ +L + F+++ + + G+ DG++ D+G+SS+Q+D G RGFSFQ+ L Sbjct: 67 RLAPYGERLTLVRRNFAEIGVGLTEAGISHIDGLLIDIGLSSLQLDTGTRGFSFQRDDDL 126 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM G ++A+ ++ + L + GEE+QA IA AIV R+ P QTT+ L Sbjct: 127 DMRMDERGEMTAATIIATCTEEQLADLFYCYGEERQARPIAAAIVAARKLEPIQTTKQLV 186 Query: 193 SLIQKTV---YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 ++ + + + K +IH AT+ FQALRI VN E+E L++ + A + LK G ++S Sbjct: 187 RVVARAIPKRFHPK--KIHVATKVFQALRIAVNTELENLSKIIDDAGEFLKPGSRFCIIS 244 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDR+VK+ F F+ IT K V +E++ N RSRSA Sbjct: 245 FHSLEDRIVKRKFRENPN-----------------FKVITNKPVKAGEEELDRNYRSRSA 287 Query: 310 KLR 312 LR Sbjct: 288 LLR 290 >gi|83595986|gb|ABC25345.1| S-adenosyl-methyltransferase [uncultured marine bacterium Ant29B7] Length = 304 Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 110/300 (36%), Positives = 160/300 (53%), Gaps = 16/300 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMG--SNVIALDRDPFAVSCGQE 76 H PVLL+ I L+ P + +DATFG GG+SR+ ++G + D+DP + Sbjct: 4 HDPVLLDACIQHLHIQPHGIYVDATFGGGGHSRAILDQLGPEGKLFGFDQDP---DTSKN 60 Query: 77 TMRDYKEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 D ++F L F + + VDG++ DLGVSS Q+D G RGFSF++ L Sbjct: 61 APND--DRFQLLPFNFEHITRILRLHKVTAVDGILADLGVSSHQLDEGSRGFSFRQHAEL 118 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ SG A + + + L + L G+ QA R+A AI++ R + T+DL Sbjct: 119 DMRMNPQSGPGAREWLETVTWEQLAQTLREFGDVHQAGRVATAIIQARDAGQMTWTEDLY 178 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +Q + ++ PA + FQA+RI VN E+ L L LK GG +V+S+HS Sbjct: 179 ECLQPMCKGPRGKKL-PA-QVFQAIRIAVNRELAVLDSLLVDGANLLKTGGRYVVMSYHS 236 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR VK+FF + A R +F IT+K +V +QE++A N R+RSAKLR Sbjct: 237 LEDRRVKRFFKEGVLEGEAARD--DHGRRYEIFDRITRKPLVASQEEIAINPRARSAKLR 294 >gi|160902330|ref|YP_001567911.1| S-adenosyl-methyltransferase MraW [Petrotoga mobilis SJ95] gi|262824808|sp|A9BHH9|RSMH_PETMO RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|160359974|gb|ABX31588.1| S-adenosyl-methyltransferase MraW [Petrotoga mobilis SJ95] Length = 286 Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 106/300 (35%), Positives = 164/300 (54%), Gaps = 30/300 (10%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETMRD 80 ++E+V++ + + +D T G GG+ ++ +N VI +D D + +E ++D Sbjct: 1 MVEEVLSYMITNKDGIYVDCTAGEGGHIKAILGYTNNKAKVIGVDVDYEVLEIAEERLKD 60 Query: 81 YKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 + L ++++ + + G VDG + DLGVS+ Q+ +RGFSF K PLDMRM Sbjct: 61 LSDNVVLIKSSYKNIDMVLRGLGIDKVDGFLMDLGVSTFQLKGENRGFSFTKDEPLDMRM 120 Query: 138 SC-SGISASDVVNQANVKDLTRILGILGEEKQ-ASRIAHAIVKRRQSAPFQTTQDLSSLI 195 S A+ +VN + +DL RI+ GEEK+ A I+ +IVK R P TTQ+L I Sbjct: 121 DVQSEKDAAYIVNNYSQEDLRRIIFEYGEEKRFAHSISKSIVKNR---PINTTQELVDAI 177 Query: 196 QKTVYFSKNNRIHP--ATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 +K + S+ + H AT++FQALRI VN E++ + + L E LK + V++FHSL Sbjct: 178 RKGLPASQVHERHRHFATKTFQALRIEVNEELKNIEETLSKFESFLKVKARVAVITFHSL 237 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 EDR+VK FF + + +T K ++PTQE++ N RSRSAKLR Sbjct: 238 EDRIVKNFFKNNER-----------------YNFLTPKPILPTQEEIKHNPRSRSAKLRV 280 >gi|269120594|ref|YP_003308771.1| S-adenosyl-methyltransferase MraW [Sebaldella termitidis ATCC 33386] gi|268614472|gb|ACZ08840.1| S-adenosyl-methyltransferase MraW [Sebaldella termitidis ATCC 33386] Length = 308 Score = 160 bits (405), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 106/305 (34%), Positives = 174/305 (57%), Gaps = 10/305 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H PVL ++VI + V LD T G G+++ + S VIA+D+D A+ + Sbjct: 4 HKPVLFDEVIENIVTNKEGVYLDCTLGGAGHTQGILENTSEKGVVIAIDQDDDAIEFAGK 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + +YKE+ +F+ F L + G V G++ D+GVSS Q+D +RGFS++ L Sbjct: 64 KLENYKERIKIFKDNFKNLDTVLYMAGYEKVSGILMDIGVSSYQLDDPERGFSYKYEAKL 123 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ + ISA +V+N+ + +++ IL GEE ++ RIA I + R+ +TT +L+ Sbjct: 124 DMRMNKNAKISAYEVINEFSEQEIADILYKYGEEPKSRRIARKITEARKEKKIETTTELA 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++ + + K+ + HPA R+FQA+R++VN E+E L + L A + L+ G L+V++FHS Sbjct: 184 DIVIRAI--GKSMKRHPAKRTFQAVRMYVNQELEVLEEALEKAVELLEDRGRLLVITFHS 241 Query: 253 LEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK F ++ I ++ + ITKK +V + ++ N R+ SAKL Sbjct: 242 LEDRIVKNKFREFEKPCKCPPNIPICVCGKESLGKVITKKPIVAGELELNDNSRAHSAKL 301 Query: 312 RAGMR 316 R R Sbjct: 302 RVFER 306 >gi|293603437|ref|ZP_06685862.1| S-adenosyl-methyltransferase MraW [Achromobacter piechaudii ATCC 43553] gi|292818139|gb|EFF77195.1| S-adenosyl-methyltransferase MraW [Achromobacter piechaudii ATCC 43553] Length = 365 Score = 160 bits (405), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 121/331 (36%), Positives = 179/331 (54%), Gaps = 37/331 (11%) Query: 19 DHVPVLLEKVI-ALLNPAPGK---------------------VILDATFGAGGYSRSFC- 55 +H PVLLE + ALL P G V +D TFG GG+SR Sbjct: 4 EHRPVLLEPTVDALLLPDFGGKGAARSHSQIEPDTATRADRGVFVDGTFGRGGHSRELLG 63 Query: 56 KMG--SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFS----QLQDYVPDKGVDGVVF 109 ++G + ++ D+DP + + ++ F+ +LQ DK VDGV+ Sbjct: 64 RLGKSARLVVFDKDP-EAIAVANALAATDSRVTVVHGGFATMAEELQQLGIDK-VDGVML 121 Query: 110 DLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQ 168 DLGVSS QID +RGFSF + GPLDMRM + G + ++ + QA+V ++ ++ GEE+ Sbjct: 122 DLGVSSPQIDDAERGFSFMRDGPLDMRMDTTRGPTVAEWLAQASVDEMREVIADYGEERF 181 Query: 169 ASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEEL 228 A ++A AI RR + P TT +L+ + V + + HPATR+FQALRI++N E+EEL Sbjct: 182 AFQVAKAIAARRATRPLCTTLELAECVASAVRTREKGQ-HPATRTFQALRIYINRELEEL 240 Query: 229 AQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQ 286 A+ L +A + L GG L V+SFHSLEDR+VK+ + + A + S + + Sbjct: 241 ARTLAAALELLAPGGRLAVISFHSLEDRMVKQCIVAAARPAAAHARLPLRESEMPQPILR 300 Query: 287 SITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 S+ + V ++VA N R+RSA LR RT Sbjct: 301 SLGR--VQAEDDEVAGNARARSAVLRVAERT 329 >gi|189219430|ref|YP_001940071.1| SAM methyltransferase involved MraW [Methylacidiphilum infernorum V4] gi|263456445|sp|B3DVX0|RSMH_METI4 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|189186288|gb|ACD83473.1| SAM methyltransferase involved MraW [Methylacidiphilum infernorum V4] Length = 316 Score = 160 bits (405), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 103/313 (32%), Positives = 164/313 (52%), Gaps = 26/313 (8%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQE 76 + H+PV+L++ + +P + +D TFG GG++ + G V+ALD D A E Sbjct: 8 VESHIPVMLKEFLKHCSPKRDEQWIDGTFGYGGHTTALLDKGCKVLALDTDEDAQKRA-E 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQ-KSGP 132 +++ E+F F+ FS++ + G VDG++ DLGVS Q+ RGFSFQ P Sbjct: 67 ILKEKGEEFYFFRKNFSEMAEACFQMGWTAVDGILLDLGVSLGQLKDPKRGFSFQFPDAP 126 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + + ++N + + L ++ + K++ ++A+ IV+ R + P + D Sbjct: 127 LDMRMDRTRERTGAALLNTLSKEQLVQLFSVACNMKESQKLANEIVRFRSTGPIKKVGDF 186 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++ + ++I+ ATR F ALRI VN E+E L + LR K LK GG + V+SFH Sbjct: 187 LEIVTRARLL--KSKINAATRPFLALRIAVNEELEHLEKALREGTKLLKGGGRIAVISFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNA--------HPAVFQSITKKVVVPTQEDVAFN 303 S EDR+VK+F S H +P H +F ++V+V +E N Sbjct: 245 SAEDRIVKEFMRS---------HCLPKKGEGVAEEENHREMFFYKVERVLVSLEERKN-N 294 Query: 304 RRSRSAKLRAGMR 316 RSRSA+LR + Sbjct: 295 PRSRSARLRIAWK 307 >gi|262341157|ref|YP_003284012.1| S-adenosyl-methyltransferase MraW [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272494|gb|ACY40402.1| S-adenosyl-methyltransferase MraW [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 301 Score = 160 bits (405), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 112/305 (36%), Positives = 164/305 (53%), Gaps = 20/305 (6%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAV 71 H H PVLL++ I L + +DATFG GG+S + K + +IALD+D Sbjct: 5 HFYYHHEPVLLKESIENLITDKNGIYVDATFGGGGHSYAILKKLNKRGILIALDQDK--E 62 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQ 128 S + ++D ++F LF F ++D + ++ G++ DLG+SS+QID RGFS Q Sbjct: 63 SIKRNFIKD--KRFHLFHNNFIHIRDILNQNHIEKVSGILVDLGLSSLQIDNPTRGFSNQ 120 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + LDMRM+ S SA +V+N+ + K+L I GE K A +I I+K+R Sbjct: 121 WNCTLDMRMNQESSYSAQNVINECSKKELFHIFYEYGEFKNAKKIVEKILKKRFQKNITN 180 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T DLS+L F K R R FQ++RI VNNEI L L + K + GG + V Sbjct: 181 TLDLSNLFFIHGSFKKRKRF--LARLFQSIRIEVNNEINILKDFLLESSKIILPGGRIAV 238 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +S+HS+EDR+ K F ++ M N F+ I KKV+ P+ +++ N RSR Sbjct: 239 ISYHSIEDRITKYFLKEE----FLIKKM---NFKTLPFRMIHKKVIKPSFQEIIRNPRSR 291 Query: 308 SAKLR 312 SA+LR Sbjct: 292 SARLR 296 >gi|254432433|ref|ZP_05046136.1| S-adenosyl-methyltransferase MraW [Cyanobium sp. PCC 7001] gi|197626886|gb|EDY39445.1| S-adenosyl-methyltransferase MraW [Cyanobium sp. PCC 7001] Length = 317 Score = 160 bits (405), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 109/315 (34%), Positives = 165/315 (52%), Gaps = 41/315 (13%) Query: 20 HVPVLLEKVIALLNP--------APGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPF 69 H PVL + V+A P + G +++D T G GG+S + G +I LD+DP Sbjct: 24 HQPVLADAVLASFAPVETLLAEHSGGGLLIDCTLGGGGHSALLLEAHPGLRLIGLDQDPS 83 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 A + E + + ++ ++ F+ D+ P + V+ DLGVSS Q+D RGFSF+ Sbjct: 84 ARTAAAERLAPFGDRVTIVATNFA---DHRPSEPALAVLADLGVSSPQLDVAGRGFSFRA 140 Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF--- 185 GPLDMRM+ +G +A+ ++++ L ++ GEE+ + RIA I ++ P+ Sbjct: 141 EGPLDMRMNPEAGETAAALLDRLEEGALADLIYGYGEERLSRRIARRI---KEQGPWNDP 197 Query: 186 ---QTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 +TT +L+ L+ ++ R+HPATR+FQALRI VN+E+ L + L L+ Sbjct: 198 ARPRTTAELAWLVGGCYPPAARRGRLHPATRTFQALRIAVNDELGVLGRWLEQVPDWLRP 257 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 GGLL V+SFHSLEDRLVK F + +T+K +V E+ Sbjct: 258 GGLLGVISFHSLEDRLVKTAFLRDE-----------------RLERVTRKPLVAAAEEAE 300 Query: 302 FNRRSRSAKLRAGMR 316 N RSRSAK R R Sbjct: 301 ANPRSRSAKFRVARR 315 >gi|325473769|gb|EGC76957.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Treponema denticola F0402] Length = 315 Score = 160 bits (404), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 108/304 (35%), Positives = 165/304 (54%), Gaps = 14/304 (4%) Query: 20 HVPVLLEKVIALLNP-APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQE 76 H VLLE+ + L P + +D T G GG++ +F K N I +D D +E Sbjct: 5 HTSVLLEECLEFLKPDVSDNLFVDGTLGEGGHTEAFLKRYPQLNAIGVDADVSIQERAKE 64 Query: 77 TMRDYKEQFSLFQATFSQ--LQDYVPDKGVDGVVF-DLGVSSMQIDCGDRGFSFQKSGPL 133 ++ + E+ F +S ++Y D ++ DLG+S RGFSF PL Sbjct: 65 RLKPFGERIR-FHLGWSDEFFKNYPKDSAPPNLILLDLGISMFHYVKSGRGFSFSSDEPL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMR++ +SA+D+VN N KDL ++ GEE+ + +IA IV++R +A F T ++L+ Sbjct: 124 DMRLNPELRLSAADIVNSYNEKDLADLIFNYGEERYSRKIASRIVEQRAAAAFSTAKELA 183 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 I K V + ++ +IHPAT++FQALRI VN E++ L + L +A L G L +++FH Sbjct: 184 DCIYKAVPQNYRHGKIHPATKTFQALRIAVNGELDRLPRLLEAAFSVLAPNGRLGLITFH 243 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP---SNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SLEDR+V KF+ GK +P P + +TKK V + E++ N SRS Sbjct: 244 SLEDRIV-KFYFKELGKSCTCPENMPICKCGGRPRA-EVLTKKAVKASDEEIRLNPPSRS 301 Query: 309 AKLR 312 A+LR Sbjct: 302 ARLR 305 >gi|330718673|ref|ZP_08313273.1| 16S rRNA m(4)C1402 methyltranserfase [Leuconostoc fallax KCTC 3537] Length = 317 Score = 160 bits (404), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 107/316 (33%), Positives = 167/316 (52%), Gaps = 13/316 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76 +H VLL + IALL+ P + +DAT G GG++ K + + D+D A+ + Sbjct: 4 EHTTVLLHEAIALLDINPEGIYVDATLGGGGHTGEILKQLTTGKLYSFDQDDTAIHYNKA 63 Query: 77 TMRD--YKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 D + L F L + G V+G+V+DLGVSS+Q D G RGFS+ Sbjct: 64 QYADEITAGKLILVHQNFRNLTHVLHQDGITSVNGIVYDLGVSSVQFDDGQRGFSYNYDA 123 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM ++A +VN+ DL R+L GE++ A IA I + R+ +TT + Sbjct: 124 ELDMRMDQRQALTAKIIVNEWPFNDLLRVLSRYGEDRFAKSIARKIEQYREKQLIETTFE 183 Query: 191 LSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I+ + ++ HPA R+FQALR+ VN+E+ L L A L G + V++ Sbjct: 184 LVDIIKDAIPAPARRKGGHPAKRTFQALRVAVNDELGALEDSLTQAIDLLGINGKISVIT 243 Query: 250 FHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 F SLEDRLVK+ F + ++ A ++P ++ +K ++P+Q+++A N R+ Sbjct: 244 FQSLEDRLVKQMFREKVSLPELPAGLPLLPEQIE-VDYRLSNRKPILPSQQEIAHNHRAE 302 Query: 308 SAKLRAGMRTVERSIE 323 SAKLR G+ + S E Sbjct: 303 SAKLR-GIERIHMSDE 317 >gi|242309935|ref|ZP_04809090.1| S-adenosyl-methyltransferase MraW [Helicobacter pullorum MIT 98-5489] gi|239523232|gb|EEQ63098.1| S-adenosyl-methyltransferase MraW [Helicobacter pullorum MIT 98-5489] Length = 311 Score = 160 bits (404), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 100/306 (32%), Positives = 172/306 (56%), Gaps = 16/306 (5%) Query: 20 HVPVLLEKVIAL----LNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSC 73 H+ VL ++V+ L G +++D T G GG+S + + +I +D+D A++ Sbjct: 5 HISVLKQEVLETFENELITKNGGILIDCTLGFGGHSLALLEKYPKLKIIGIDQDNDAIAL 64 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYV--PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + ++K++FS+ FS+ + ++ + G++ D+GVSSMQ D +RGFSF+ S Sbjct: 65 ATKRLENFKDRFSIKYGKFSETLKTILSQEQNIVGILADIGVSSMQFDNKERGFSFE-SE 123 Query: 132 PLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM +A D++N ++ +L RI GE ++ ++AH I++ R+ + + Sbjct: 124 TLDMRMDKTKNFNAKDIINTYSLPELERIFKNFGEIREYKKLAHCIIELRKKEKITSAKM 183 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE-KALKAGGLLIVVS 249 LS I + K+ +IHPAT +FQALRI VNNE+ EL + L+ E ++ G L ++S Sbjct: 184 LSEFIARHF---KHPKIHPATLAFQALRIEVNNELGELERLLQIFETHKMQNGARLCIIS 240 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 FHSLEDR++K +F + + + + +++ KK + +++ N RSR Sbjct: 241 FHSLEDRIIKTYFKKWENPCICPQEAMLCKCGKNHQKGKNLYKKPLTAKAQEIQENPRSR 300 Query: 308 SAKLRA 313 SAKLRA Sbjct: 301 SAKLRA 306 >gi|255037275|ref|YP_003087896.1| S-adenosyl-methyltransferase MraW [Dyadobacter fermentans DSM 18053] gi|254950031|gb|ACT94731.1| S-adenosyl-methyltransferase MraW [Dyadobacter fermentans DSM 18053] Length = 305 Score = 160 bits (404), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 105/299 (35%), Positives = 163/299 (54%), Gaps = 12/299 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77 HVPV+L + + L P + +D TFG GG+SR+ + ++ D+DP A S E Sbjct: 8 HVPVMLSECLEGLQIQPDGIYVDVTFGGGGHSRAILEKLTTGRLLVFDQDPDAASNALEF 67 Query: 78 MRDYKEQFSLFQATFSQLQDYVP-DKG--VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 D ++F+ A F L+ Y+ +K V+G++ DLGVSS QI+ +RGFS + LD Sbjct: 68 KDD--QRFTFIPANFRHLKRYLKLNKAPLVNGILADLGVSSHQINTPERGFSTRFDADLD 125 Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM+ + +A +V+ + +L RILG+ GE A A AI+ R ++ +T DL Sbjct: 126 MRMNPNIEKTAREVLKTRSAAELQRILGMYGEVTNARTAAEAIIAARYNSQIETVNDLKG 185 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 ++ + + N+ + FQALRI VN+E+ L + L + L G L+V+S+HSL Sbjct: 186 ILMRYAPKHRENKYF--AQVFQALRIEVNDELAVLEEFLAQVPEVLAPDGRLVVMSYHSL 243 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 EDRLVK + + + P +S+T+K + T E++A N R+RSAKLR Sbjct: 244 EDRLVKNYIQKGKFYGEVEKDFYGNEIKP--LKSVTRKPIEATAEEIAVNPRARSAKLR 300 >gi|86134334|ref|ZP_01052916.1| MraW methylase family [Polaribacter sp. MED152] gi|85821197|gb|EAQ42344.1| MraW methylase family [Polaribacter sp. MED152] Length = 298 Score = 160 bits (404), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 107/301 (35%), Positives = 167/301 (55%), Gaps = 19/301 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76 H VLL++ + LN + +D TFG GG+S+ K +G N + A D+DP A++ + Sbjct: 4 HNAVLLQESVDGLNIKEDGIYVDVTFGGGGHSKEILKRLGKNGRLFAFDQDPDAINNAID 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 E+F L F + ++ K VDG++ DLGVSS Q D +RGFS + G L Sbjct: 64 D-----ERFVLIPENFRYISRFLRFHRVKKVDGILADLGVSSHQFDEAERGFSIRFDGDL 118 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ S ISA +++N + + L IL + GE + + ++A IV R+++P +T+ L Sbjct: 119 DMRMNQKSKISAKEIINNYSEEKLAEILFLYGELRNSRKLARTIVHERKNSPIETSFQLK 178 Query: 193 SLIQKTVYFSKNNRIHPA-TRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +++ F N R H + FQA+RI VN E+E L + L+ L G L V+S+H Sbjct: 179 EVLKA---FLPNAREHKILAQIFQAIRIEVNEELEVLKEFLQQVPNLLNDEGRLSVISYH 235 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDRLVK+F + + + + ++ P K++VP +E++ N R+RSAKL Sbjct: 236 SLEDRLVKRFIRTGLFEGEPEKDVFGNSNEPL---KKVGKLIVPPKEEIKINNRARSAKL 292 Query: 312 R 312 R Sbjct: 293 R 293 >gi|224536607|ref|ZP_03677146.1| hypothetical protein BACCELL_01482 [Bacteroides cellulosilyticus DSM 14838] gi|224521698|gb|EEF90803.1| hypothetical protein BACCELL_01482 [Bacteroides cellulosilyticus DSM 14838] Length = 306 Score = 160 bits (404), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 104/300 (34%), Positives = 161/300 (53%), Gaps = 16/300 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HVPVLL+ + +N P +D TFG GG+SR G ++ D+D A ++ Sbjct: 8 HVPVLLKPSVDGMNIRPDGTYVDVTFGGGGHSREILSRLGDGGRLLGFDQDEDA----EQ 63 Query: 77 TMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + D F ++ F L + Y + VD ++ DLGVSS D +RGFSF+ G L Sbjct: 64 NIVD-NPHFIFVRSNFRYLHNFLRYHDIEEVDAILADLGVSSHHFDDSERGFSFRFDGAL 122 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +G +A+D++N + + L I + GE K + ++A +VK R T + Sbjct: 123 DMRMNKRAGDTAADIINTYDEERLADIFYLYGELKNSRKLASVLVKARAGQKITTIGEFL 182 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ F + + FQALRI VN E+E L + L +A +ALK GG L+V+++HS Sbjct: 183 EIIKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLYAATEALKPGGRLVVITYHS 240 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK + + + + + P F+ + KV+VP + ++ N RSRSAKLR Sbjct: 241 LEDRMVKNMMKTGNVEGKMEKDFFGNVQTP--FRLVNNKVIVPDEAEIERNPRSRSAKLR 298 >gi|88811846|ref|ZP_01127099.1| S-adenosyl-methyltransferase [Nitrococcus mobilis Nb-231] gi|88790730|gb|EAR21844.1| S-adenosyl-methyltransferase [Nitrococcus mobilis Nb-231] Length = 303 Score = 160 bits (404), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 113/301 (37%), Positives = 159/301 (52%), Gaps = 15/301 (4%) Query: 23 VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMR 79 +LLE I L V +D TFG GG++ + K G + +D+DP A+S Q+ Sbjct: 1 MLLEAAIDALRIQANGVYVDGTFGCGGHAAAILKRLATGGRLGLIDKDPSAISRAQQKFA 60 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGV----DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 F + ++++L GV DGV+ DLG SS Q+D RGFSF + GPLDM Sbjct: 61 ADARCF-IHHGSYAELGVLADTCGVRGRIDGVLLDLGASSPQLDEARRGFSFLRDGPLDM 119 Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM S G+SA+ + + ++ ++ GEE+ A RIA AI RQ+ T + Sbjct: 120 RMDPSKGVSAAAWLADTPLSEIESVIRRYGEERYARRIAQAIDASRQAGRLPQTTGALAA 179 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 + + HPATRSFQA+RI +N+E+EEL L L GG L+V+SFHSLE Sbjct: 180 LIAAAVPRREVGKHPATRSFQAIRIAINDELEELRCFLAGICDLLCPGGRLVVISFHSLE 239 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAH---PAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 DRLVK+F S ++ + IP AH P + + K V P E++ N R+RSA L Sbjct: 240 DRLVKRFMRDHS-RIGDLPPGIPIVAHSMRPRLRR--PAKPVRPGAEEIRVNPRARSAVL 296 Query: 312 R 312 R Sbjct: 297 R 297 >gi|318040652|ref|ZP_07972608.1| 16S rRNA m(4)C1402 methyltranserfase [Synechococcus sp. CB0101] Length = 309 Score = 159 bits (403), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 116/315 (36%), Positives = 167/315 (53%), Gaps = 34/315 (10%) Query: 19 DHVPVLLEKVIA-------LLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPF 69 DHVPVL E V+A LL+ V++D T G GG+S + + I LD+DP Sbjct: 14 DHVPVLAEPVLAGFAELEGLLDQRGEGVLIDCTLGGGGHSALLLEAHPRLRLIGLDQDPT 73 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 A + + + + ++ + F+ Y P + V V+ DLGVSS Q+D +RGFSF+ Sbjct: 74 ARAAAAQRLAPFGDRVEIVATNFAT---YTPAEPVVAVLADLGVSSPQLDVAERGFSFRL 130 Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQT 187 GPLDMRM+ +G +A+ ++++ + +L ++ GEE+ + RIA I + + Sbjct: 131 DGPLDMRMNPDAGETAAALIDRLDETELADLIYAYGEERLSRRIARRIKHDLAEQGAYGG 190 Query: 188 TQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T L+ + ++ RIHPATR+FQALRI VN+E+ L + L SA L GGL Sbjct: 191 TAALAYAVAGCYPPKARRGRIHPATRTFQALRIAVNDELGVLDRLLSSAPDWLVPGGLFG 250 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+SFHSLEDR VK F S Q IT+K V+ T E+ N RS Sbjct: 251 VISFHSLEDRRVKTAFVSDE-----------------RLQRITRKAVMATTEEEERNPRS 293 Query: 307 RSAKLRAGMR--TVE 319 RSA+LR R T+E Sbjct: 294 RSARLRLAHRRCTIE 308 >gi|72383375|ref|YP_292730.1| S-adenosyl-methyltransferase MraW [Prochlorococcus marinus str. NATL2A] gi|88909209|sp|Q46HK1|RSMH_PROMT RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|72003225|gb|AAZ59027.1| bacterial methyltransferase [Prochlorococcus marinus str. NATL2A] Length = 304 Score = 159 bits (403), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 110/308 (35%), Positives = 167/308 (54%), Gaps = 38/308 (12%) Query: 19 DHVPVLLEKVIALLNPAPGKV-----ILDATFGAGGYSRSFCKM--GSNVIALDRDPFAV 71 +H+PV+ +++I L P ++ I+DAT G GG+S + G +I LD+DP A+ Sbjct: 13 NHIPVMGKEIIRSLKELPSELTKKGLIIDATIGGGGHSAQILENFPGIKIIGLDQDPMAI 72 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + + + + F+ D+ + V+ DLGVSS Q+D RGFSF+ +G Sbjct: 73 KAASKKLIKFGTRIEIISTNFA---DFSHHEQAICVLADLGVSSHQLDEPSRGFSFRLNG 129 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTTQ 189 P+DMRM+ G SA++++ + ++L ++ LGEEK++ RIA I ++ P+ TQ Sbjct: 130 PIDMRMNPKEGSSAAELIETLSEQNLADLIYELGEEKRSRRIARKIKNDLAENGPYSGTQ 189 Query: 190 DLSSLIQ-----KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 DLS I K Y RIHP+TR+FQALRI VNNE+ L L A L GL Sbjct: 190 DLSYAIAGCFPPKQRY----GRIHPSTRTFQALRIAVNNELGSLESLLLKAPNWLLENGL 245 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 +V+SFHSLEDR VK F + + + ++KK + + E++ N Sbjct: 246 FMVMSFHSLEDRRVKSSFKTDN-----------------RLKVLSKKPIRASPEEIELNP 288 Query: 305 RSRSAKLR 312 RS+SAKLR Sbjct: 289 RSKSAKLR 296 >gi|330997819|ref|ZP_08321654.1| S-adenosyl-methyltransferase MraW [Paraprevotella xylaniphila YIT 11841] gi|329569707|gb|EGG51472.1| S-adenosyl-methyltransferase MraW [Paraprevotella xylaniphila YIT 11841] Length = 302 Score = 159 bits (403), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 106/304 (34%), Positives = 166/304 (54%), Gaps = 24/304 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPFA----VS 72 HVPVLL++ + L P V D TFG GG+SR+ ++ + D+D A V+ Sbjct: 7 HVPVLLKECVDGLVVNPAGVYADVTFGGGGHSRAIVSRLDTAGHLYSFDQDEDAEANIVA 66 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQK 129 G+ F+ ++ F L++++ GV DG++ DLGVSS D +RGFSF+ Sbjct: 67 DGR---------FTFVRSNFRYLKNWMRYYGVGELDGLLADLGVSSHHFDDAERGFSFRF 117 Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 G LDMRM+ ++A+DV+N + L I + GE K A ++A +VK R +TT Sbjct: 118 DGRLDMRMNQRAQLTAADVLNDYAEERLADIFYLYGELKNARKLASWVVKARMHRRIETT 177 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 ++ +++ F ++ + FQALRI VN E++ L + L +A + L+ GG L+V+ Sbjct: 178 EEFMEVVKPL--FERDREKKELAKVFQALRIEVNQEMDALKEMLTAAVELLRPGGRLVVL 235 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 ++HSLEDR+VK ++G V R +++ KV+VP +E+ N RSRS Sbjct: 236 TYHSLEDRMVKNLV--KTGNVEGKRIQDFYGNVDCPLRAVHNKVIVPGEEEQRANPRSRS 293 Query: 309 AKLR 312 AKLR Sbjct: 294 AKLR 297 >gi|189464532|ref|ZP_03013317.1| hypothetical protein BACINT_00874 [Bacteroides intestinalis DSM 17393] gi|189438322|gb|EDV07307.1| hypothetical protein BACINT_00874 [Bacteroides intestinalis DSM 17393] Length = 304 Score = 159 bits (403), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 105/300 (35%), Positives = 159/300 (53%), Gaps = 16/300 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HVPVLL + +N P +D TFG GG+SR G ++ D+D A + Sbjct: 9 HVPVLLMPSVDGMNIRPDGTYIDVTFGGGGHSREILSRLGDGGRLLGFDQDEDA----ER 64 Query: 77 TMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + D F+ ++ F L + Y + VD ++ DLGVSS D +RGFSF+ G L Sbjct: 65 NIVD-NPHFTFVRSNFRYLHNFLRYHNIEEVDSILADLGVSSHHFDDSERGFSFRFDGAL 123 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +G +A+D++N + + L I + GE K + ++A IVK R T + Sbjct: 124 DMRMNKRAGDTAADIINNYDEERLADIFYLYGELKNSRKLASVIVKARAGQKITTIGEFL 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ F + + FQALRI VN E+E L + L +A +ALK GG L+V+++HS Sbjct: 184 EVIKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLYAATEALKPGGRLVVITYHS 241 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK + + + + + P F+ + KV+VP ++ N RSRSAKLR Sbjct: 242 LEDRMVKNIMKTGNVEGKMEKDFFGNVQTP--FRLVNNKVIVPDDAEIERNPRSRSAKLR 299 >gi|116626359|ref|YP_828515.1| S-adenosyl-methyltransferase MraW [Candidatus Solibacter usitatus Ellin6076] gi|122251651|sp|Q01Q40|RSMH_SOLUE RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|116229521|gb|ABJ88230.1| S-adenosyl-methyltransferase MraW [Candidatus Solibacter usitatus Ellin6076] Length = 286 Score = 159 bits (403), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 114/300 (38%), Positives = 165/300 (55%), Gaps = 25/300 (8%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77 HVPV+ + I LL P V LDAT G GG+S + VIA DRD ++ + Sbjct: 2 HVPVMPAEAIELLAIRPEGVYLDATAGLGGHSGLIARQLTTGTVIANDRDTRSLEMARAN 61 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++ ++ +F L D V G VDG++ DLGVS Q+ DRGFSF GPLD Sbjct: 62 TAEWSDRMCFHYGSFGSLSDAVSQAGFEKVDGLLADLGVSRYQLTAPDRGFSFMADGPLD 121 Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM S +A+D+VN + K L ++ +GEE++A RIA AIV+ + P ++T L+ Sbjct: 122 MRMDASIQTTAADLVNHTDEKTLADLIYQMGEERRARRIARAIVR---ARPLRSTLHLAD 178 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 ++++ V + R+HPAT++F ALR+ VN+E EL + L A LK+GG ++V+SF S Sbjct: 179 VVERAV--PRTGRLHPATKTFMALRMAVNDEPGELRRLLEIAPGLLKSGGRMVVISFMSS 236 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 +DR+VK+ F A +TK + P+ E+ N SRSAKLRA Sbjct: 237 DDRMVKEKFKELGQSKQAT--------------ILTKHPLQPSDEESFNNPASRSAKLRA 282 >gi|325299150|ref|YP_004259067.1| Ribosomal RNA small subunit methyltransferase H [Bacteroides salanitronis DSM 18170] gi|324318703|gb|ADY36594.1| Ribosomal RNA small subunit methyltransferase H [Bacteroides salanitronis DSM 18170] Length = 305 Score = 159 bits (403), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 105/300 (35%), Positives = 158/300 (52%), Gaps = 17/300 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQE 76 H+PVLL + + +N + +D T G GG+SR + GS + D+D A Sbjct: 9 HIPVLLHESVDGMNLHENGIYVDVTLGGGGHSREILRRMDKGSRLFGFDQDEDAERNAPA 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 R F+ ++ F L++++ GV D ++ DLGVSS +D RGFSF+ PL Sbjct: 69 DTR-----FTFVRSNFRYLRNFLRYYGVEQADAILADLGVSSHHLDDASRGFSFRFDAPL 123 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ + ++A+DVVN + L I + GE K + R+A +VK R P T DL Sbjct: 124 DMRMNKRAKLTAADVVNTYDESRLADIFYLYGEMKNSRRLASDLVKARAQKPVALTGDLI 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +++ Y K + FQALRI VN+E++ L + L +A LK GG L V+++HS Sbjct: 184 GIVKP--YCPKEREKKELAKIFQALRIEVNHEMDALKEMLEAAVDVLKPGGRLAVITYHS 241 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK + + + A + + P K +VP +E++ N RSRSAKLR Sbjct: 242 LEDRMVKNMMKAGNVEGKAEQDFYGNFRSPL---RTVGKPIVPGEEEIGRNPRSRSAKLR 298 >gi|289209369|ref|YP_003461435.1| S-adenosyl-methyltransferase MraW [Thioalkalivibrio sp. K90mix] gi|288945000|gb|ADC72699.1| S-adenosyl-methyltransferase MraW [Thioalkalivibrio sp. K90mix] Length = 309 Score = 159 bits (403), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 119/306 (38%), Positives = 166/306 (54%), Gaps = 11/306 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQE 76 H+PVL + V+ L +D TFG GG+SR+ G +++A+DRDP A + Sbjct: 7 HIPVLRDAVLEGLAVRADGFYVDGTFGRGGHSRAILDRLGAGGSLLAMDRDPEAAAAASS 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYV----PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 D + F FS + D + PD+ DGV DLGVSS Q+D +RGFSFQ GP Sbjct: 67 FADDPR--FVFEPGPFSTMADTLRRRFPDRAPDGVFLDLGVSSPQLDTPERGFSFQHDGP 124 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G SA+D + +A ++ ++ GEE+ + R+A AIV R AP T L Sbjct: 125 LDMRMDPTQGESAADWLARAEQDEIADVIYHYGEERHSRRVARAIVAARADAPITRTAQL 184 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++++ V + + HPATR+FQALRI VN E+EEL Q L + +AL G ++V+SFH Sbjct: 185 AEIVRRAVPGREPGK-HPATRTFQALRIHVNRELEELEQWLETIPEALHTGARMVVISFH 243 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+VK+ R + P K V E+ N R+RSA L Sbjct: 244 SLEDRMVKQALRGPRPDTRLPRGLPVMPETPERPWRPIGKPVRADAEEQRRNPRARSAVL 303 Query: 312 RAGMRT 317 R G RT Sbjct: 304 RVGERT 309 >gi|125624479|ref|YP_001032962.1| S-adenosyl-methyltransferase [Lactococcus lactis subsp. cremoris MG1363] gi|263458159|sp|A2RLT4|RSMH_LACLM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263460329|sp|Q02ZY9|RSMH_LACLS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|124493287|emb|CAL98255.1| S-adenosyl-methyltransferase [Lactococcus lactis subsp. cremoris MG1363] Length = 317 Score = 159 bits (403), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 105/307 (34%), Positives = 169/307 (55%), Gaps = 11/307 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGS-NVIALDRDPFAVSCGQET 77 H VLL + + +L P + +DAT G G+S K+ + ++ + D+D A + + Sbjct: 9 HDTVLLHETVDMLEVKPNGIYVDATLGGAGHSEYLLSKLTTGHLYSFDQDETAHANAKVR 68 Query: 78 MRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + +++ +L ++ F L+ + + +DG+++DLGVSS Q D RGFS++K Sbjct: 69 LSEQLAEDKVTLIKSNFRNLKSALAELDITKIDGILYDLGVSSPQFDDSQRGFSYKKEAR 128 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S +SA +VVN + L RI GE+K + +IA I + R+ P +TT +L Sbjct: 129 LDMRMDQSQTLSAYEVVNDYPYEALVRIFFRYGEDKFSKQIARKIEQSRKIKPIETTIEL 188 Query: 192 SSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 + LI+ + + + HPA R FQA+RI VN+E+ + + A LK G + V++F Sbjct: 189 ADLIKSALPQKELKKKGHPAKRIFQAIRIEVNDELGAAEESIEQAIDLLKVDGRISVITF 248 Query: 251 HSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDRL K F S V M+P A + I +K V+ ++E++ FN R+ SA Sbjct: 249 HSLEDRLTKSIFKEYSTVNVPKGLPMLPKEME-AKLKLINRKPVLASEEELEFNNRAHSA 307 Query: 310 KLRAGMR 316 KLR + Sbjct: 308 KLRVAQK 314 >gi|113954684|ref|YP_731835.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. CC9311] gi|123327560|sp|Q0I6T7|RSMH_SYNS3 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|113882035|gb|ABI46993.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. CC9311] Length = 310 Score = 159 bits (402), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 106/308 (34%), Positives = 165/308 (53%), Gaps = 31/308 (10%) Query: 20 HVPVLLEKVIALLNPAP-----GKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVS 72 HVPVL E ++ +L+ P ++DAT G GG+S+ + G ++ LD+DP A + Sbjct: 14 HVPVLAETLMQVLSEQPPILWQNTAVIDATLGGGGHSKLILERFPGVRLVGLDQDPSARA 73 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + ++ + F+ + P + V V+ DLGVSS Q+D RGFSF+ GP Sbjct: 74 AAASRLEPFLDRVQIVPVNFAAFE---PPEPVSLVLADLGVSSPQLDVASRGFSFRLDGP 130 Query: 133 LDMRMS--CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQTTQ 189 LDMRM+ G +A +++ + +V L ++ GEE+ + RIA I ++ + T Sbjct: 131 LDMRMNPVAGGETAEEMIARLDVNALADLIYAFGEERLSRRIARRIKADLEAEGAYAGTA 190 Query: 190 DLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ + ++ RIHPATR+FQALRI VN+E+ L + L++A LK GG+L ++ Sbjct: 191 ALAYAVAGCYPPKARRGRIHPATRTFQALRIAVNDELGVLDRLLQTAPGWLKPGGVLAII 250 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDR VK F + +T+K + ++++ A N RSRS Sbjct: 251 SFHSLEDRRVKTAFLQEE-----------------RLERVTRKPFMASEQEQADNPRSRS 293 Query: 309 AKLRAGMR 316 AKLR R Sbjct: 294 AKLRIARR 301 >gi|42526707|ref|NP_971805.1| S-adenosyl-methyltransferase MraW [Treponema denticola ATCC 35405] gi|85701364|sp|P62477|RSMH_TREDE RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|41817022|gb|AAS11716.1| S-adenosyl-methyltransferase MraW [Treponema denticola ATCC 35405] Length = 315 Score = 159 bits (402), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 106/306 (34%), Positives = 164/306 (53%), Gaps = 18/306 (5%) Query: 20 HVPVLLEKVIALLNP-APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQE 76 H VLLE+ + L P A + +D T G GG++ +F K N I +D D +E Sbjct: 5 HTSVLLEECLEFLKPDASDNLFVDGTLGEGGHTEAFLKRYPQLNAIGVDADVSIQERAKE 64 Query: 77 TMRDYKEQFSLFQATFSQL-----QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++ + E+ + +D+ P + ++ DLG+S RGFSF Sbjct: 65 RLKPFGERIRFHLGWSDEFFKNYPKDFAPP---NLILLDLGISMFHYVKSGRGFSFSSDE 121 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMR++ +SA+D+VN N KDL ++ GEE+ + +IA IV++R +A F ++ Sbjct: 122 PLDMRLNPELRLSAADIVNSYNEKDLADLIFNYGEERYSRKIASRIVEQRAAAAFSNAKE 181 Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ I K V + ++ +IHPAT++FQALRI VN E++ L + L +A L G L +++ Sbjct: 182 LADCIYKAVPQNYRHGKIHPATKTFQALRIAVNGELDRLPRLLEAAFSVLAPNGRLGLIT 241 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIP---SNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 FHSLEDR+V KF+ GK +P P + +TKK V + E++ N S Sbjct: 242 FHSLEDRIV-KFYFKELGKSCTCPENMPICKCGGRPRA-EVLTKKAVKASDEEIRLNPPS 299 Query: 307 RSAKLR 312 RSA+LR Sbjct: 300 RSARLR 305 >gi|111115132|ref|YP_709750.1| hypothetical protein BAPKO_0317 [Borrelia afzelii PKo] gi|216263935|ref|ZP_03435929.1| S-adenosyl-methyltransferase MraW [Borrelia afzelii ACA-1] gi|123145742|sp|Q0SNK4|RSMH_BORAP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|110890406|gb|ABH01574.1| conserved hypothetical protein [Borrelia afzelii PKo] gi|215979979|gb|EEC20801.1| S-adenosyl-methyltransferase MraW [Borrelia afzelii ACA-1] Length = 296 Score = 159 bits (402), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 99/302 (32%), Positives = 169/302 (55%), Gaps = 24/302 (7%) Query: 20 HVPVLLEKVIALLNPAPGK---VILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 H PVLL+ + L+ P K + +D+T G G ++++ + +++ ++RD + Sbjct: 7 HFPVLLDAICKLIEDLPVKSDLIYIDSTLGEGAHAKAILEKYDFLSLVGIERDSQILERA 66 Query: 75 QETMRDYKEQFSLFQATFSQL-QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ + +K++ + F F +Y + + ++ DLG+S +GFSF + PL Sbjct: 67 KQFLLIFKDRITYFNDWFDNFFANYPLNVKANFILVDLGISMFHYKDSKKGFSFLEDEPL 126 Query: 134 DMRMSCSGISAS--DVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 DMR+ S S S ++VN + DL ++ L E + RI+ AIV+ R+ QTT++L Sbjct: 127 DMRLCSSSCSISAAEIVNTFSKYDLESLIYNLSNEHYSRRISKAIVEYRKIKKIQTTKEL 186 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 S+I K FSK +I+PAT++FQALRI+VN+E+ L + L + L G+L +++FH Sbjct: 187 QSIINKVYPFSKV-KINPATKTFQALRIYVNDELARLKRSLPLWVENLAKDGILAIITFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 S+EDR+VK FF S S ++ I+KK ++P+ +++ N+ SRSAKL Sbjct: 246 SIEDRIVKDFFRSLSCD---------------LYVKISKKPIIPSSDEIKKNKPSRSAKL 290 Query: 312 RA 313 RA Sbjct: 291 RA 292 >gi|86132600|ref|ZP_01051193.1| S-adenosyl-methyltransferase [Dokdonia donghaensis MED134] gi|85816842|gb|EAQ38027.1| S-adenosyl-methyltransferase [Dokdonia donghaensis MED134] Length = 298 Score = 159 bits (402), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 107/305 (35%), Positives = 166/305 (54%), Gaps = 27/305 (8%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H PVLL++ + L+ P V +D TFG GG+SR ++G N + D+DP A + Sbjct: 4 HNPVLLKETVDGLDIKPDGVYVDVTFGGGGHSREILSRLGENGKLYGFDQDPDAAQNVPD 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 R F L F ++ ++ K VDG++ D GVSS Q D +RGFS + L Sbjct: 64 DSR-----FVLIPENFRFIKRFLRFHGHKKVDGILGDFGVSSHQFDVAERGFSTRFESDL 118 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +SA +VVN +DL ++ GE + A ++A AIV R +AP +T++ L Sbjct: 119 DMRMNQKDDLSAYNVVNDYAEEDLRQVFWQYGELRNAPKLASAIVVARGNAPIKTSEQLK 178 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++ + K+ + +QA+RI VN EIE L + L E+ L+ GG + ++S+HS Sbjct: 179 KVL--AAFLPKHREHKILAQIYQAIRIEVNQEIEVLKEFLLQTEQLLEPGGRISLISYHS 236 Query: 253 LEDRLVKKF-----FASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 LEDRLVK++ F K M +P F+ + +++VP++E++ N R+R Sbjct: 237 LEDRLVKRYIRNGLFEGEPEKDMYGNFEVP-------FKKVG-RLIVPSKEEIKSNNRAR 288 Query: 308 SAKLR 312 SAKLR Sbjct: 289 SAKLR 293 >gi|332881743|ref|ZP_08449391.1| S-adenosyl-methyltransferase MraW [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332680382|gb|EGJ53331.1| S-adenosyl-methyltransferase MraW [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 302 Score = 159 bits (402), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 105/304 (34%), Positives = 165/304 (54%), Gaps = 24/304 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPFA----VS 72 HVPVLL++ + L P + D TFG GG+SR+ ++ D+D A V+ Sbjct: 7 HVPVLLKECVDGLVVNPAGIYADVTFGGGGHSRAIVSRLDAAGHLYGFDQDADAEANIVA 66 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQK 129 G+ F+ ++ F L++++ GV DG++ DLGVSS D +RGFSF+ Sbjct: 67 DGR---------FTFVRSNFRYLKNWMRYYGVEQLDGLLADLGVSSHHFDDAERGFSFRF 117 Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 G LDMRM+ ++A+DV+N + L I + GE K A ++A +VK R +TT Sbjct: 118 DGKLDMRMNQRARLTAADVLNDYAEERLADIFYLYGELKNARKLASWVVKARMHRRIETT 177 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 ++ +++ F ++ + FQALRI VN E++ L + L +A + L+ GG L+V+ Sbjct: 178 EEFMEVVKPL--FERDREKKELAKVFQALRIEVNQEMDALKEMLTAAVELLRPGGRLVVL 235 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 ++HSLEDR+VK ++G V R +++ KV+VP +E+ N RSRS Sbjct: 236 TYHSLEDRMVKNLV--KTGNVEGKRIQDFYGNVDCPLRAVHNKVIVPGEEEQRANPRSRS 293 Query: 309 AKLR 312 AKLR Sbjct: 294 AKLR 297 >gi|77414796|ref|ZP_00790918.1| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae 515] gi|77159158|gb|EAO70347.1| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae 515] Length = 298 Score = 159 bits (402), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 101/297 (34%), Positives = 164/297 (55%), Gaps = 12/297 (4%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQETMRDYKE--QF 85 +L+ P + +DAT G G+S ++G + + A D+D A+ ++ Y + Q Sbjct: 1 MLDIKPDGIYVDATLGGAGHSEYLLSQLGPDGHLYAFDQDQKAIDNAHIRLKKYVDTGQV 60 Query: 86 SLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-G 141 + + F L + GV +G+ +DLGVSS Q+D +RGFS+++ PLDMRM+ Sbjct: 61 TFIKDNFRNLSSNLKALGVSEINGICYDLGVSSPQLDERERGFSYKQDAPLDMRMNREQS 120 Query: 142 ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYF 201 ++A DVVN + DL RI GE+K + +IA I + R P TT +L+ +I+ + Sbjct: 121 LTAYDVVNTYSYHDLVRIFFKYGEDKFSKQIARKIEQVRAEKPISTTTELAEIIKSSKSA 180 Query: 202 SK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKK 260 + + HPA + FQA+RI VN+E+ + ++ A L G + V++FHSLEDRL K+ Sbjct: 181 KELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDLLAVDGRISVITFHSLEDRLTKQ 240 Query: 261 FFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 F S +V IP + P + + + +K ++P+QE++ N R+ SAKLR R Sbjct: 241 LFKEASTVEVPKGLPFIPDDLQPKM-ELVNRKPILPSQEELEANNRAHSAKLRVARR 296 >gi|203287765|ref|YP_002222780.1| S-adenosyl-methyltransferase [Borrelia recurrentis A1] gi|263445859|sp|B5RRC5|RSMH_BORRA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|201084985|gb|ACH94559.1| S-adenosyl-methyltransferase [Borrelia recurrentis A1] Length = 297 Score = 159 bits (401), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 105/313 (33%), Positives = 169/313 (53%), Gaps = 26/313 (8%) Query: 17 IGD--HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPF 69 +GD H+PVLLE VI L+ G V +D T G GG+S++ NVI ++RD Sbjct: 1 MGDIFHIPVLLEDVINLVETIYLDDGFVFVDCTLGEGGHSKAVLSKYQNINVIGIERDDV 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQL-QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 ++ +E++ ++ ++ S F Y + + ++ DLG+S RGFSF Sbjct: 61 VLNRAKESLVEFSKRISYSNTWFDDFFCKYSLHRRFNFILADLGISMFHYKVAGRGFSFL 120 Query: 129 KSGPLDMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + LDMR+ S GISA D+VN + + L ++ LG E + RI AI++ R+ Q Sbjct: 121 EDEKLDMRLFPSDGGISAYDIVNTFDKEMLENLIYELGGEYYSRRIVKAILEYRKINKIQ 180 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T+++L +I K Y + +I+PAT++FQALRI+VN+E++ L + L L G+L Sbjct: 181 TSRELQRIICKA-YPNVKFKINPATKTFQALRIYVNDELDRLKRSLPLWIANLSKNGILA 239 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 +++FHSLED++VK+FF + + +TKK + + ++ +N S Sbjct: 240 IITFHSLEDKIVKEFFKGLTKDKYCI---------------LTKKPITSSFKEKQYNNAS 284 Query: 307 RSAKLRAGMRTVE 319 RSAKLRA + E Sbjct: 285 RSAKLRAVKKLYE 297 >gi|255322622|ref|ZP_05363766.1| S-adenosyl-methyltransferase MraW [Campylobacter showae RM3277] gi|255300183|gb|EET79456.1| S-adenosyl-methyltransferase MraW [Campylobacter showae RM3277] Length = 310 Score = 159 bits (401), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 104/300 (34%), Positives = 164/300 (54%), Gaps = 12/300 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 HVPVLL +V+ VI+D T G GG+S + + NV IA D+D A+ E Sbjct: 5 HVPVLLNEVLQAFEDIKSGVIVDCTLGYGGHSSAILEQNQNVNLIACDQDEEAIKFSSER 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 ++ + ++ +F++ FS++ V + G++ D+GVSS+Q+D +RGF KS LDMRM Sbjct: 65 LKKFGQRAQIFKSKFSEILGKVEQSQIRGILADIGVSSLQLDKNERGFGL-KSENLDMRM 123 Query: 138 SCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 SA D+VN + K+L RI GE ++ A I++ RQS ++ + L+ +I Sbjct: 124 DAQAKFSAYDIVNFYSAKELERIFADYGELPSPAKFAAKIIEARQSGEIKSAERLAQIIG 183 Query: 197 -KTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 K V N R + AT +FQA+RI VNNE+ EL L+S E + ++ ++SFHSLE Sbjct: 184 LKGV----NGRSVSAATLAFQAIRIEVNNELGELQNLLQSIEDSQIDECIVAIISFHSLE 239 Query: 255 DRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 DR+VK F + + + A+ + ++KK + P+ ++ N RS AK+R Sbjct: 240 DRIVKNKFRQWAQSCICPPQALRCTCGGDNALGKIVSKKAITPSAAEIKANPRSSCAKMR 299 >gi|257453541|ref|ZP_05618831.1| S-adenosyl-methyltransferase MraW [Enhydrobacter aerosaccus SK60] gi|257448999|gb|EEV23952.1| S-adenosyl-methyltransferase MraW [Enhydrobacter aerosaccus SK60] Length = 319 Score = 159 bits (401), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 106/288 (36%), Positives = 162/288 (56%), Gaps = 23/288 (7%) Query: 41 LDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD 97 +DATFG GG+SR ++ S ++ D+DP A+ Q + + + +F++LQD Sbjct: 42 VDATFGRGGHSRLLLTYLDKDSRLLVFDKDPQAIQTAQ-ALAASDARVIVIHDSFAKLQD 100 Query: 98 YVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANV 153 + G VDG++ DLGVSS Q+D G RGFSF + G +DMRM + G S + + + + Sbjct: 101 NLQRLGIEQVDGIMADLGVSSPQLDDGSRGFSFMRDGAVDMRMDTTRGESVAQWLKRVDE 160 Query: 154 KDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRS 213 L +L GEE+ + RIA AI +Q + +T L+ I K + + HPAT+S Sbjct: 161 TVLADVLYNYGEERHSRRIARAI---KQMEHYDSTLALAETI-KQAHPNWQKGKHPATQS 216 Query: 214 FQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVR 273 FQA+RIF+NNE+ ++ L + ALK GG L V+SFHSLEDR++K+F S + Sbjct: 217 FQAMRIFINNELGDIDSFLAQSLIALKVGGRLAVISFHSLEDRIIKQFLQKHS------K 270 Query: 274 HMIPSNAH----PAVFQSITK-KVVVPTQEDVAFNRRSRSAKLRAGMR 316 P +A+ P + ++K + V P ++ N R+RSA LR+ R Sbjct: 271 GQYPEDANLPMPPKRPKLLSKPERVAPLATEIKTNPRARSALLRSATR 318 >gi|262370681|ref|ZP_06064006.1| S-adenosylmethionine-dependent methyltransferase [Acinetobacter johnsonii SH046] gi|262314481|gb|EEY95523.1| S-adenosylmethionine-dependent methyltransferase [Acinetobacter johnsonii SH046] Length = 307 Score = 159 bits (401), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 113/305 (37%), Positives = 162/305 (53%), Gaps = 14/305 (4%) Query: 20 HVPVLL-EKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQ 75 H+ VLL E V AL+ + +D TFG GG++R K+ N V D+DP A+ Sbjct: 3 HISVLLHETVDALVADRNTGIFIDGTFGRGGHTRLLLSKLDENARVYGFDKDPQALETAA 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F + A+F+ L+ + +G VDGV+ DLGVSS Q+D +RGFSF K GP Sbjct: 63 -ILEQEDPRFKIIHASFADLKHELEVRGIGLVDGVMADLGVSSPQLDQAERGFSFMKDGP 121 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G +A+ + + L I+ GEE+ + RIA AI + + +TT L Sbjct: 122 LDMRMDNSKGPTAAQWLVNIEEEALANIIFQYGEERYSRRIAKAI---KAAGLIETTAQL 178 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ K + H ATR+FQA+RI +N E+E++ L A + LK G L V+SFH Sbjct: 179 AEIV-KVAHPKWEKNKHAATRTFQAIRIAINKELEDIEVFLPQAVEVLKPNGRLAVISFH 237 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDRL+K+F S + +P P + V + +V N RSRSA L Sbjct: 238 SLEDRLIKQFIQKESTLEEDMGWGMPQQ-RPDTRRLKKVSRVKASDAEVKANPRSRSAWL 296 Query: 312 RAGMR 316 R R Sbjct: 297 RVAER 301 >gi|224372899|ref|YP_002607271.1| S-adenosyl-methyltransferase MraW [Nautilia profundicola AmH] gi|262825192|sp|B9L9G3|RSMH_NAUPA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|223589436|gb|ACM93172.1| S-adenosyl-methyltransferase MraW [Nautilia profundicola AmH] Length = 306 Score = 159 bits (401), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 104/301 (34%), Positives = 167/301 (55%), Gaps = 15/301 (4%) Query: 20 HVPVLLEKVIALLNPAP-GKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76 H+PVLL + I L N P +D T G GG+S + + N+ I +D+D A+ + Sbjct: 8 HIPVLLNETIGLYNDMPENGYFIDCTLGFGGHSEAILEKYPNIKLIGIDQDAEAMHFAKN 67 Query: 77 TMRDYKEQFSLFQATFSQLQDYVP-DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + + ++ S + +P D V G++ D+GVSS Q+D +RGF+F+ S LDM Sbjct: 68 RLARFGDRVQFINKRASSALEELPEDLPVSGILADIGVSSYQLDNKERGFTFE-SEELDM 126 Query: 136 RMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM SA DVVN + +DL RI+ GE ++ ++ AI+ +R P ++ ++L+ + Sbjct: 127 RMDKTQDFSAKDVVNFYSKEDLERIIKNYGECRRFKKVVSAIISKR---PIKSNRELADI 183 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 + K + + FQA+RI VNNE+ EL + L++A+K K G +L +++FHSLE Sbjct: 184 LGHIGLRDKKD----LAKIFQAIRIEVNNELNELEKILKNAKKLAKNGTILGIITFHSLE 239 Query: 255 DRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 DR+VK F S K + I + + + +TKK +V ++E++ N RSRSAKLR Sbjct: 240 DRIVKNTFKEWSKKCICPPEAIRCECGGNNQLGKILTKKPLVASKEEIKMNPRSRSAKLR 299 Query: 313 A 313 Sbjct: 300 G 300 >gi|148926658|ref|ZP_01810339.1| hypothetical protein Cj8486_0712c [Campylobacter jejuni subsp. jejuni CG8486] gi|145845177|gb|EDK22272.1| hypothetical protein Cj8486_0712c [Campylobacter jejuni subsp. jejuni CG8486] Length = 312 Score = 158 bits (400), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 106/302 (35%), Positives = 166/302 (54%), Gaps = 13/302 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 H+PVLL +V + LD T G GG+S + K ++ IA D+D A+ ++ Sbjct: 7 HIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKNHPDLKFIACDQDQQALEFSKKR 66 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 ++D++ + + Q+ FS++ + + K + G++ D+GVSS Q+D +RGFS S LDMR Sbjct: 67 LKDFRNRITFMQSNFSEVLEKISHKEELRGILADIGVSSFQLDNNERGFSVN-SDFLDMR 125 Query: 137 MS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M+ S ISA +++N + LT I GE A IA I R P ++ ++L +I Sbjct: 126 MNQNSKISAYEIINTYTKEQLTSIFKDYGELHDAHFIAEKICLERSKNPIKSAKELYQII 185 Query: 196 QKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 K +N+R I AT +FQA+RI VN E++ L L E +L ++SFHSLE Sbjct: 186 GKG---KQNHRKISKATLAFQAIRIEVNQELKVLKDFLEHLENLKPKNCILAIISFHSLE 242 Query: 255 DRLVKKFFASRSGKVMAVRHMIPS---NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 DR+VK+FF S + ++ N H ++ Q ITKK + ++E++ N RS AK+ Sbjct: 243 DRIVKQFFKKWSKNCICNEKIMRCECGNNH-SLGQIITKKAISASKEELLKNSRSSCAKM 301 Query: 312 RA 313 RA Sbjct: 302 RA 303 >gi|224531783|ref|ZP_03672415.1| S-adenosyl-methyltransferase MraW [Borrelia valaisiana VS116] gi|224511248|gb|EEF81654.1| S-adenosyl-methyltransferase MraW [Borrelia valaisiana VS116] Length = 296 Score = 158 bits (400), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 100/302 (33%), Positives = 169/302 (55%), Gaps = 24/302 (7%) Query: 20 HVPVLLEKVIALLNPAPGK---VILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 H PVLL+ + L+ P K + +D+T G G ++++ + ++I ++RD + Sbjct: 7 HFPVLLDAICKLIEDLPVKSDSIYIDSTLGEGTHAKAILEKYDFLSLIGIERDFQILQRA 66 Query: 75 QETMRDYKEQFSLFQATFSQL-QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ + ++++ + F F +Y + + ++ DLG+S +GFSF + PL Sbjct: 67 KQFLLIFEDRITYFNDWFDNFFANYPLNAKANFILVDLGISMFHYKGSKKGFSFLEDEPL 126 Query: 134 DMRMSCSGISAS--DVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 DMR+ S S S ++VN + DL ++ L E + RI+ AIV+ R+ QTT++L Sbjct: 127 DMRLCSSSCSISAAEIVNTFSKYDLEELIYDLSNEHYSRRISKAIVEYRKIKKIQTTKEL 186 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 S+I K FSK +I+PAT++FQALRI+VN+E+ L + L + L G+L +++FH Sbjct: 187 QSIINKVYPFSKA-KINPATKTFQALRIYVNDELTRLKRSLPLWVENLAKDGILAIITFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 S+EDR+VK FF S S + A I+KK ++P+ +++ N+ SRSAKL Sbjct: 246 SIEDRIVKDFFRSLSFDLYA---------------KISKKPIIPSFDEIKKNKPSRSAKL 290 Query: 312 RA 313 RA Sbjct: 291 RA 292 >gi|298372234|ref|ZP_06982224.1| S-adenosyl-methyltransferase MraW [Bacteroidetes oral taxon 274 str. F0058] gi|298275138|gb|EFI16689.1| S-adenosyl-methyltransferase MraW [Bacteroidetes oral taxon 274 str. F0058] Length = 297 Score = 158 bits (400), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 107/300 (35%), Positives = 169/300 (56%), Gaps = 17/300 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 HVPVLLE+ I L P V +D TFG GG+SR+ ++G+ + D+D A + Sbjct: 3 HVPVLLEESIECLRIKPDGVYVDCTFGGGGHSRAILARLGNKGKLYGFDQDREAY---RN 59 Query: 77 TMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 T D E+F+ + F + + Y + VDG++ DLGVSS D +RGFS++ G L Sbjct: 60 TTDD--ERFTFVRGNFKYISNFLRYYGEDKVDGILADLGVSSHHFDEAERGFSYRFDGTL 117 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ + +A +++N + + L IL + GE + A RIA+AIV RRQ+ +T +L+ Sbjct: 118 DMRMNREASFTAEELINGYDEQALADILYLYGELRNARRIANAIVCRRQTKAIKTIFELT 177 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +++ + +K FQA+RI VN E++ L L + L++GG + V+S+HS Sbjct: 178 EVLRP--FCTKGKEYKELAPIFQAIRIEVNAELDSLKTLLCRSVDLLRSGGRIAVISYHS 235 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDRLVK F + + + + P F +++K +V +E +A N R+RSA+LR Sbjct: 236 LEDRLVKNFLKTGNFGGEPQKDFYGNQITP--FANVSKAIVSNDRE-IADNPRARSARLR 292 >gi|77408183|ref|ZP_00784928.1| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae COH1] gi|77173198|gb|EAO76322.1| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae COH1] Length = 298 Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 101/297 (34%), Positives = 163/297 (54%), Gaps = 12/297 (4%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQETMRDYKE--QF 85 +L+ P +DAT G G+S ++G + + A D+D A+ ++ Y + Q Sbjct: 1 MLDIKPDGTYVDATLGGAGHSEYLLSQLGPDGHLYAFDQDQKAIDIAHIRLKKYVDTGQV 60 Query: 86 SLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-G 141 + + F L + GV +G+ +DLGVSS Q+D +RGFS+++ PLDMRM+ Sbjct: 61 TFIKDNFRNLSSNLKALGVSEINGICYDLGVSSPQLDERERGFSYKQDAPLDMRMNREQS 120 Query: 142 ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYF 201 ++A DVVN + DL RI GE+K + +IA I + R P TT +L+ +I+ + Sbjct: 121 LTAYDVVNTYSYHDLVRIFFKYGEDKFSKQIARKIEQVRAEKPISTTTELAEIIKSSKSA 180 Query: 202 SK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKK 260 + + HPA + FQA+RI VN+E+ + ++ A L G + V++FHSLEDRL K+ Sbjct: 181 KELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDLLAVDGRISVITFHSLEDRLTKQ 240 Query: 261 FFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 F S +V IP + P + + + +K ++P+QE++ N R+ SAKLR R Sbjct: 241 LFKEASTVEVPKGLPFIPDDLQPKM-ELVNRKPILPSQEELEANNRAHSAKLRVARR 296 >gi|86149768|ref|ZP_01067997.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp. jejuni CF93-6] gi|88596954|ref|ZP_01100190.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp. jejuni 84-25] gi|85839586|gb|EAQ56846.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp. jejuni CF93-6] gi|88190643|gb|EAQ94616.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp. jejuni 84-25] gi|284925949|gb|ADC28301.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp. jejuni IA3902] gi|315929134|gb|EFV08361.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp. jejuni 305] Length = 310 Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 106/302 (35%), Positives = 166/302 (54%), Gaps = 13/302 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 H+PVLL +V + LD T G GG+S + K ++ IA D+D A+ ++ Sbjct: 5 HIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKNHPDLKFIACDQDQQALKFSKKR 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 ++D++ + + Q+ FS++ + + K + G++ D+GVSS Q+D +RGFS S LDMR Sbjct: 65 LKDFRNRITFMQSNFSEVLEKISHKEELRGILADIGVSSFQLDNNERGFSVN-SDFLDMR 123 Query: 137 MS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M+ S ISA +++N + LT I GE A IA I R P ++ ++L +I Sbjct: 124 MNQNSKISAYEIINTYTKEQLTSIFKDYGELHDAHFIAEKICLERSKNPIKSAKELYQII 183 Query: 196 QKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 K +N+R I AT +FQA+RI VN E++ L L E +L ++SFHSLE Sbjct: 184 GKG---KQNHRKISKATLAFQAIRIEVNQELKVLKDFLEHLENLKPKNCILAIISFHSLE 240 Query: 255 DRLVKKFFASRSGKVMAVRHMIPS---NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 DR+VK+FF S + ++ N H ++ Q ITKK + ++E++ N RS AK+ Sbjct: 241 DRIVKQFFKKWSKNCICNEKIMRCECGNNH-SLGQIITKKAISASKEELLKNSRSSCAKM 299 Query: 312 RA 313 RA Sbjct: 300 RA 301 >gi|254459393|ref|ZP_05072814.1| S-adenosyl-methyltransferase MraW [Campylobacterales bacterium GD 1] gi|207084006|gb|EDZ61297.1| S-adenosyl-methyltransferase MraW [Campylobacterales bacterium GD 1] Length = 307 Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 104/302 (34%), Positives = 170/302 (56%), Gaps = 15/302 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 H+PVL +V+ +I+D T G GG+S + N+ IA+D+D A+ + Sbjct: 6 HIPVLYREVVDTFKDIKNGIIIDCTMGYGGHSSMILESNPNIELIAIDQDQTAIDFSTKR 65 Query: 78 MRDYKEQFSLFQATFSQ-LQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + ++ ++ S+ + FS ++D + + GVD GV+ D+GVSS+Q+D DRGFS++ S L Sbjct: 66 LEEFGDRVSIRKGRFSSVIKDIIAEYGVDKIRGVLADIGVSSLQLDQKDRGFSYE-SENL 124 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM +SA +VVN+ + +L IL GE + +IA AIV R PF + ++LS Sbjct: 125 DMRMDKDAPLSAKNVVNEYSNSELENILLEYGELRNYKKIASAIVNSR---PFTSAKELS 181 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 + + K +IHPAT QA+RI VN+E+ EL L+S E + + V+SFHS Sbjct: 182 ERTKHLMPHGK--KIHPATLLMQAIRIEVNDELGELKSLLQSIEDSQFTDATVAVISFHS 239 Query: 253 LEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 LEDR+VK+ + + + + + ++ + ++KK + +++ N RSRSAK Sbjct: 240 LEDRIVKQTYTKWTKNCICPDEAMRCTCSRDNSLGRILSKKPITAQDDELKENPRSRSAK 299 Query: 311 LR 312 +R Sbjct: 300 MR 301 >gi|333029398|ref|ZP_08457459.1| Ribosomal RNA small subunit methyltransferase H [Bacteroides coprosuis DSM 18011] gi|332739995|gb|EGJ70477.1| Ribosomal RNA small subunit methyltransferase H [Bacteroides coprosuis DSM 18011] Length = 305 Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 106/300 (35%), Positives = 161/300 (53%), Gaps = 16/300 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76 H+PVLL + I LN P + +D TFG GG+S+ S ++ + D+D + Sbjct: 10 HIPVLLNESINGLNIDPQGIYVDVTFGGGGHSKEILSHLAPTGHLFSFDQDK---DAEKN 66 Query: 77 TMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + +D +F+ ++ F +++ Y V G++ DLGVSS D +RGFSF+ L Sbjct: 67 SFQD--SRFTFVRSNFRYIKNFLQYYHVTEVSGILADLGVSSHHFDESERGFSFRFDADL 124 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ + +A+D+VN + + L + + GE K + RIA IVK R P +T Sbjct: 125 DMRMNTRASKTAADIVNNYSQEQLADVFYLYGELKNSRRIASKIVKYRAENPIKTIAQFI 184 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I T F + + FQALRI VN E+E L + L SA LK GG L V+++HS Sbjct: 185 EVI--TPLFGPQRQKKDFAKVFQALRIEVNEEMEALREMLISAIGLLKPGGRLAVITYHS 242 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK F ++G + + + ++I KV++PT ++ N RSRSAKLR Sbjct: 243 LEDRMVKNLF--KTGNIEGKLNKDFYGKIISPIKAINNKVIIPTDQEQELNPRSRSAKLR 300 >gi|317473246|ref|ZP_07932543.1| MraW methylase [Anaerostipes sp. 3_2_56FAA] gi|316899341|gb|EFV21358.1| MraW methylase [Anaerostipes sp. 3_2_56FAA] Length = 303 Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 97/300 (32%), Positives = 162/300 (54%), Gaps = 9/300 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 +H VLL++ I L P + +D T G GG++ S I +D+D A+ Sbjct: 4 EHASVLLDETIRELKIKPDGIYVDGTLGGGGHAFHVLNRLSEKGRYIGIDQDEDAIRAST 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + ++++ ++ + + + + D G VDG++ DLGVSS Q+D DRGF++++ P Sbjct: 64 KRLAPFQDKVTIVRDNYVNMPKVLKDLGISRVDGILLDLGVSSFQLDEKDRGFTYREDVP 123 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM SA D+VN + ++L I+ GE+K A IA I R+ P +TT L Sbjct: 124 LDMRMDQRQTFSARDIVNGYSEQELFHIIRDYGEDKFAKNIAKHIAAEREKVPIETTGQL 183 Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+ + + HPA R+FQA+RI N E+E L L + L G L +++F Sbjct: 184 IEVIKHAIPMKVRAVGGHPAKRTFQAIRIECNRELEVLKTSLDQMIELLNPEGRLCIITF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK+ F + I + + + + IT+K ++PT+E++ N+R++S+ Sbjct: 244 HSLEDRIVKRAFRKNENPCTCPPNFPICTCGNESKGKVITRKPIIPTEEELMRNKRAKSS 303 >gi|315926807|gb|EFV06181.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 310 Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 106/302 (35%), Positives = 166/302 (54%), Gaps = 13/302 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 H+PVLL +V + LD T G GG+S + K ++ IA D+D A+ ++ Sbjct: 5 HIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKNHPDLKFIACDQDQQALEFSKKR 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 ++D++ + + Q+ FS++ + + K + G++ D+GVSS Q+D +RGFS S LDMR Sbjct: 65 LKDFRNRITFMQSNFSEVLEKISHKEELRGILADIGVSSFQLDNNERGFSVN-SDFLDMR 123 Query: 137 MS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M+ S ISA +++N + LT I GE A IA I R P ++ ++L +I Sbjct: 124 MNQNSKISAYEIINTYTKEQLTSIFKDYGELHDAHFIAEKICLERSKNPIKSAKELYQII 183 Query: 196 QKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 K +N+R I AT +FQA+RI VN E++ L L E +L ++SFHSLE Sbjct: 184 GKG---KQNHRKISKATLAFQAIRIEVNQELKVLKDFLEHLENLKPKNCILAIISFHSLE 240 Query: 255 DRLVKKFFASRSGKVMAVRHMIPS---NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 DR+VK+FF S + ++ N H ++ Q ITKK + ++E++ N RS AK+ Sbjct: 241 DRIVKQFFKKWSKNCICNEKIMRCECGNNH-SLGQIITKKAISASKEELLKNSRSSCAKM 299 Query: 312 RA 313 RA Sbjct: 300 RA 301 >gi|225429894|ref|XP_002283626.1| PREDICTED: similar to Os02g0137600 [Vitis vinifera] Length = 444 Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 110/344 (31%), Positives = 171/344 (49%), Gaps = 51/344 (14%) Query: 20 HVPVLLEKVIALLNPA-------PGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPF 69 HVPV+L +V+ + + P + +D T GA G+S + + + + +D DP Sbjct: 96 HVPVMLGEVLEVFSSFSSSSSSSPLRSFVDCTLGAAGHSSAIIQAHPELELYVGMDVDPI 155 Query: 70 AVSCGQETMRD------------YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQ 117 A Q +R + F ++ ++ + + GVDG++ DLG+SSMQ Sbjct: 156 AHEKAQARIRSLCGDSSHLKAHTFMRNFKNIKSVLREVDEELLSSGVDGILMDLGMSSMQ 215 Query: 118 IDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 ++ +RGFS +GPLDMRM + ++A D++N ++ RIL GEE + + I Sbjct: 216 VNNAERGFSVLANGPLDMRMDPQASLTAEDILNSWPDTEVGRILREYGEESNWRSLQNKI 275 Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFSKNNR---IHPATRSFQALRIFVNNEIEELAQGLR 233 VK R +T +L LI+KT ++ R I ATR FQALRI VN+E++ L L Sbjct: 276 VKARLFGGLHSTGELVDLIRKTTPRTRGGRQGWIKTATRVFQALRIAVNDELKTLEDSLY 335 Query: 234 SAEKALKAGGLLIVVSFHSLEDRLVKKFF---------------ASRSGKVMAVRHMIPS 278 + + L GG L V+SFHSLEDR+VK+ F + G +R++ Sbjct: 336 ACFECLTPGGRLAVISFHSLEDRIVKQTFLDIINSNGEDESGEGGGQEGCGKDLRNIRND 395 Query: 279 NAHPAVF----------QSITKKVVVPTQEDVAFNRRSRSAKLR 312 N + +TK+ + P++E+ NRRSRSAKLR Sbjct: 396 NDEKEAWIKQMVQGWNGTILTKRPITPSEEEERLNRRSRSAKLR 439 >gi|255994327|ref|ZP_05427462.1| S-adenosyl-methyltransferase MraW [Eubacterium saphenum ATCC 49989] gi|255993040|gb|EEU03129.1| S-adenosyl-methyltransferase MraW [Eubacterium saphenum ATCC 49989] Length = 311 Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 107/302 (35%), Positives = 168/302 (55%), Gaps = 10/302 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H PV+L + I LN +D T G GG+ K S +I +D+D A+ + Sbjct: 5 HSPVMLHECIEALNIKEDGTYIDCTLGGGGHFTEIAKRLSEDGRLIGIDKDADAIDAYRR 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + + + ++ F +++ G+DG ++ DLGVSS Q+D RGFS++ PL Sbjct: 65 RNVNTRCKVDIVKSDFKDIREVAAKTGIDGADGILMDLGVSSYQLDKASRGFSYKNDAPL 124 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM +A VVN+ + ++LTR++ +EK A+RIA AIV+ R+ A ++T LS Sbjct: 125 DMRMDREQKFTAKTVVNEYSKEELTRVIREYSDEKWAARIAAAIVREREEAEIESTARLS 184 Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I++ + ++ HPA R+FQA+RI VN E+ L + L+ A+ L G L V+SFH Sbjct: 185 EIIKEAIPAATRRTGPHPAKRTFQAIRIEVNGELGMLEKTLKDAKAILNKNGRLAVISFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT-KKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VKK+ + + IP A IT K++ P+ +++ N R+RSAK Sbjct: 245 SLEDRIVKKWIQDELHPCICPKD-IPVCACNRRSDIITVGKIICPSVDELDRNPRARSAK 303 Query: 311 LR 312 LR Sbjct: 304 LR 305 >gi|15828964|ref|NP_326324.1| methyltransferase [Mycoplasma pulmonis UAB CTIP] gi|20139101|sp|Q98Q75|RSMH_MYCPU RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|14089907|emb|CAC13666.1| METHYLTRANSFERASE [Mycoplasma pulmonis] Length = 299 Score = 158 bits (399), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 103/300 (34%), Positives = 159/300 (53%), Gaps = 16/300 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H PVLL+ VI L P + +D T G G+S K S+ +I D+D FA+ ++ Sbjct: 4 HKPVLLKDVIENLEINPEGIYVDLTLGYAGHSSEILKKLSSKGKLIGFDQDSFAIEKSRQ 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + F L F + Y+ VDG + DLGVSS+Q+D RGFS+ K GPL Sbjct: 64 RLSQISDNFVLINDNFVNFKVYLDKMNISFVDGFLLDLGVSSVQLDFAHRGFSYSKLGPL 123 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ + A D+VN + + L +I + K A ++A IV R P + T +L Sbjct: 124 DMRMNLDQPLKADDIVNGYDQESLCKIFIENADVKLAKQVAKGIVNNR---PIKDTLELV 180 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ ++ + + +PA FQA+RI VN+E+ L + L + LK +++++FHS Sbjct: 181 EVIRSSLPAALVRKKNPAKAVFQAIRIAVNDELIVLKKFLAQSLDFLKKDSKMLIITFHS 240 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 +EDR+VK FF + R I V K + PT+E++A NRR++S+KLR Sbjct: 241 IEDRIVKDFFKRQVKNKHDRRLPIMEQKDYQV------KTIKPTEEEIAQNRRAKSSKLR 294 >gi|260435603|ref|ZP_05789573.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. WH 8109] gi|260413477|gb|EEX06773.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. WH 8109] Length = 294 Score = 158 bits (399), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 111/305 (36%), Positives = 165/305 (54%), Gaps = 28/305 (9%) Query: 20 HVPVLLEKVI--ALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQ 75 H PVL + V+ A P P +++DAT G GG+S + ++ I LD+D A + Sbjct: 6 HEPVLADAVLDAARQIPRPDGLLIDATLGGGGHSARLLQQHPSLRLIGLDQDATARAAAA 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 E + + + S+ F+ DYVP + V+ DLGVSS Q+D +RGFSF+ GPLDM Sbjct: 66 ERLAPFGARVSIVATNFA---DYVPPEPAVMVLADLGVSSPQLDVAERGFSFRLDGPLDM 122 Query: 136 RMSCSGI--SASDVVNQANVKDLTRILGILGEEKQASRIAHAI-VKRRQSAPFQTTQDLS 192 RM+ SG +A++++++ +L ++ GEE+ + RIA I + ++ T L+ Sbjct: 123 RMNASGEGETAAELIDRLEENELADLIYGYGEERLSRRIARRIKADLKDKGSYEGTAALA 182 Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ RIHPATR+FQALRI VN+E+ L + L+ A L+ GLL ++SFH Sbjct: 183 YAVAGCYPPKARRGRIHPATRTFQALRIAVNDELGVLDRLLQQAPDWLEPEGLLGIISFH 242 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR VK F + IT+K VV T+++ N RSRSAKL Sbjct: 243 SLEDRRVKTAFLRDE-----------------RLKRITRKPVVATEQEEEANPRSRSAKL 285 Query: 312 RAGMR 316 R R Sbjct: 286 RVAQR 290 >gi|295116225|emb|CBL37072.1| S-adenosyl-methyltransferase MraW [butyrate-producing bacterium SM4/1] Length = 382 Score = 158 bits (399), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 104/321 (32%), Positives = 178/321 (55%), Gaps = 10/321 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76 H VLL + + LN P + +D T G GG++ S G +I LD+D A++ E Sbjct: 5 HTSVLLYETVDSLNIRPDGIYVDGTLGGGGHASLVLSRLGEGGRLIGLDQDADAIAAATE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS-GP 132 ++ Y ++ ++ + + +++ + G VDG+ DLGVSS Q+D +RGF++++ P Sbjct: 65 RLKPYGDRVTVIRTNYENIKEALASLGIAKVDGIYLDLGVSSYQLDTAERGFTYREDDAP 124 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM +A D+VN + +L RI+ GE++ A IA IVK RQ +T +L Sbjct: 125 LDMRMDQRRSETAKDIVNGYSEMELYRIIRDYGEDRFAKNIAKHIVKARQEKEIETAGEL 184 Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 + +I+ + + HPA R+FQA+RI +N E++ L + + + L GG L V++F Sbjct: 185 TEIIRAAIPAKIRATGGHPAKRTFQAIRIELNRELQVLENSIDTMIELLNPGGRLSVITF 244 Query: 251 HSLEDRLVK-KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK +F + + + + + +T+K ++P+ E+++ N+RS+SA Sbjct: 245 HSLEDRIVKNRFRINENPCTCPPEFPVCMCGKKSRGRVVTRKPILPSDEELSANKRSKSA 304 Query: 310 KLRAGMRTVERSIEDDSFVHL 330 KL + RS + ++F L Sbjct: 305 KLECSKKQAIRSSKPEAFRGL 325 >gi|320530962|ref|ZP_08031995.1| S-adenosyl-methyltransferase MraW [Selenomonas artemidis F0399] gi|320136827|gb|EFW28776.1| S-adenosyl-methyltransferase MraW [Selenomonas artemidis F0399] Length = 310 Score = 158 bits (399), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 111/304 (36%), Positives = 155/304 (50%), Gaps = 14/304 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 HV VL + +A L+ P +D T GA G++ S +I +D+D A++ Q Sbjct: 5 HVSVLPAETVAALSVVPEGTYVDCTLGAAGHAGRIAAQLSPAGRLIGIDQDETAIAAAQV 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + SL F L + +GV DG++FDLGVSS QID RGFS+ + PL Sbjct: 65 RLASAACRVSLVHDNFRNLTAILTAEGVSAVDGILFDLGVSSPQIDTAARGFSYMQDAPL 124 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + SA VVN+ + LT + GEE+ A RIA I R+ P +TT +L Sbjct: 125 DMRMDRRAARSAYTVVNEYSAARLTELFYDYGEERWAKRIAAFIEAARKERPIETTGELV 184 Query: 193 SLIQKTVYFSKNNRI---HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 +I + V K R HPA R FQA+RI VN E+ L + +A LK GG + V++ Sbjct: 185 EIIDRAV--PKKVRAKGGHPAKRVFQAIRIEVNEELTILPDAVTAAVHTLKPGGRIAVIT 242 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK+ + + H + H + I K E A N R++S Sbjct: 243 FHSLEDRIVKRTMQQLARGCICPPHTPVCICGHTPELRLIGKAQTASLAE-CAANARAKS 301 Query: 309 AKLR 312 AKLR Sbjct: 302 AKLR 305 >gi|328773130|gb|EGF83167.1| hypothetical protein BATDEDRAFT_21617 [Batrachochytrium dendrobatidis JAM81] Length = 434 Score = 158 bits (399), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 110/337 (32%), Positives = 160/337 (47%), Gaps = 68/337 (20%) Query: 16 TIGDHVPVLLEKVIALLNPA----------------PGKVILDATFGAGGYSRSFC-KMG 58 T DH PVLL V+ +L+P ++I DATFG GGY+++ KM Sbjct: 49 TKPDHKPVLLVPVVDILSPEFDLQSRERQSQRVRFQRPRLICDATFGNGGYTKALLDKMD 108 Query: 59 SNVIALDRDPFAVSCGQET--MRDYKEQFSLFQATFSQLQDYVP------DKGVDGVVFD 110 V +D+DP A+ + +YK + FS +Q+ + + +DG+VFD Sbjct: 109 CKVFCVDQDPLAIERAMDMSLKPEYKNRLIPIHGKFSDIQNLIAPYTASHEACLDGIVFD 168 Query: 111 LGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQAS 170 +G+SS Q+D RGFSF+K GPLD DL RIL GEEK A Sbjct: 169 IGISSNQLDDASRGFSFRKDGPLDY----------------PEMDLVRILQQYGEEKNAY 212 Query: 171 RIAHAIVKRRQSAPFQTTQDLSSLIQKTV----YFSKNNRIHPATRSFQALRIFVNNEIE 226 +I I R TT L+ +I K V ++ + ++ HPA ++ +RI++N+E++ Sbjct: 213 KIVRMIAAIRSKTYINTTTQLAQIIAKAVGKEEHWQQGHK-HPAMKT---IRIYINDELK 268 Query: 227 ELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ 286 +L QGL AE+ LK G +VV+FHSLEDR+VK+FF A Q Sbjct: 269 QLQQGLVMAERLLKPDGRCVVVTFHSLEDRIVKRFFQ-------------------ACAQ 309 Query: 287 SITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIE 323 +T + P R S K + + T ER E Sbjct: 310 GVTPDELPPPMTQQESRRESTRVKSQIALETAERKRE 346 Score = 36.2 bits (82), Expect = 7.6, Method: Compositional matrix adjust. Identities = 16/30 (53%), Positives = 23/30 (76%) Query: 288 ITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 ++KK +VP ++++ N RSRSAKLRA RT Sbjct: 395 LSKKAIVPDEKEMQENSRSRSAKLRAARRT 424 >gi|326559297|gb|EGE09724.1| S-adenosyl-methyltransferase MraW [Moraxella catarrhalis 7169] gi|326568235|gb|EGE18317.1| S-adenosyl-methyltransferase MraW [Moraxella catarrhalis BC8] gi|326569935|gb|EGE19982.1| S-adenosyl-methyltransferase MraW [Moraxella catarrhalis BC1] gi|326573681|gb|EGE23639.1| S-adenosyl-methyltransferase MraW [Moraxella catarrhalis O35E] Length = 330 Score = 158 bits (399), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 110/315 (34%), Positives = 174/315 (55%), Gaps = 24/315 (7%) Query: 20 HVPVLLEKVIAL------LNPAPGKV---ILDATFGAGGYSR---SFCKMGSNVIALDRD 67 H VLL + +A+ LN KV +DATFG GG+S+ + + + D+D Sbjct: 13 HTTVLLPETVAMVLGVKQLNDVTSKVSGVYVDATFGRGGHSQLLLEYLAPEATLAVFDKD 72 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRG 124 P A++ + ++ + + +F+ L + G+D G++ DLGVSS Q+D G RG Sbjct: 73 PEAIAVAK-SLAAQDTRIKVVHDSFAHLTKNLQALGIDKIDGLMADLGVSSPQLDDGTRG 131 Query: 125 FSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 FSF + G +DMRM + G S+ + + + +L +L GEE+ + +IA AI K Q+ Sbjct: 132 FSFMRDGVVDMRMDTTRGEPVSEWLQRVSADELADVLYEYGEERHSRKIARAI-KSMQN- 189 Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 + +T+ L+ +I K + + HPAT+SFQA+RIF+NNE+ ++ L + LKAGG Sbjct: 190 -YTSTRQLAEVI-KQAHPAWQKGKHPATQSFQAMRIFINNELGDVEAFLAQSIGVLKAGG 247 Query: 244 LLIVVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 +L V+SFHSLEDRL+K+F S G+ + P F K + P+ ++V Sbjct: 248 MLAVISFHSLEDRLIKQFLQRHSRGQYEEDARLPIIPKRPKYFGK--PKRIGPSDQEVKA 305 Query: 303 NRRSRSAKLRAGMRT 317 N R+RSA LR +R+ Sbjct: 306 NPRARSAWLRGAVRS 320 >gi|89895661|ref|YP_519148.1| hypothetical protein DSY2915 [Desulfitobacterium hafniense Y51] gi|219670081|ref|YP_002460516.1| S-adenosyl-methyltransferase MraW [Desulfitobacterium hafniense DCB-2] gi|122482071|sp|Q24TD8|RSMH_DESHY RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446217|sp|B8FT64|RSMH_DESHD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|89335109|dbj|BAE84704.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219540341|gb|ACL22080.1| S-adenosyl-methyltransferase MraW [Desulfitobacterium hafniense DCB-2] Length = 310 Score = 158 bits (399), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 107/305 (35%), Positives = 164/305 (53%), Gaps = 16/305 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQE 76 HV VLL++ + + P +D T G G Y S ++ D+DP A+ Q+ Sbjct: 5 HVTVLLKETVDGVVRDPSGTYVDCTLGGAGHSGYVLSRLSEKGKLVGFDQDPLAIKNAQD 64 Query: 77 TMRDYKEQFSL---FQATFSQLQ--DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 F + F+ LQ + +P V GV+FDLGVSS Q+D +RGFS+ + Sbjct: 65 KFAGDPRVFLVNRNFEGLEESLQSLELLP---VQGVLFDLGVSSPQLDEAERGFSYMQDA 121 Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM+ +SA +VN+ + L IL GEEK + RI IV+ R+ TT + Sbjct: 122 ELDMRMNPQNPLSAKTLVNEGKAEMLAEILWKYGEEKWSKRIVEFIVEARKQKSITTTGE 181 Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I++ + ++ HPA R+FQALRI VN+E+ L + L + L GG + V++ Sbjct: 182 LVDIIKRAIPAGARREGPHPAKRTFQALRIAVNDELGVLERALDQVIRCLAPGGRVGVIT 241 Query: 250 FHSLEDRLVKKFFASRSGKVMA--VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 FHSLEDR+VK+ F S G+ V + A A+ + + +K ++P+ +++ N R+R Sbjct: 242 FHSLEDRIVKETFNSWLGRCTCPPVFPVCQCGAR-AMARLVHRKPILPSPQEIEANPRAR 300 Query: 308 SAKLR 312 SAKLR Sbjct: 301 SAKLR 305 >gi|329964563|ref|ZP_08301617.1| S-adenosyl-methyltransferase MraW [Bacteroides fluxus YIT 12057] gi|328524963|gb|EGF52015.1| S-adenosyl-methyltransferase MraW [Bacteroides fluxus YIT 12057] Length = 319 Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 103/300 (34%), Positives = 159/300 (53%), Gaps = 16/300 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H+PVLL + +N P +D TFG GG+S+ G ++ D+D + Sbjct: 18 HIPVLLMPSVDGMNIRPDGTYVDVTFGGGGHSKEILSRLGDGGRLLGFDQDE---DAERN 74 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + D F ++ F L +++ G VD ++ DLGVSS D +RGFSF+ G L Sbjct: 75 IVND--PHFIFVRSNFRYLHNFLRYHGIGQVDAILADLGVSSHHFDDSERGFSFRFEGAL 132 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +G +A+D+VN + + L I + GE K + ++A IVK R T + Sbjct: 133 DMRMNKRAGTTAADIVNAYDEERLADIFYLYGELKNSRKLASVIVKARALQKISTIGEFL 192 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +++ F + + FQALRI VN E+E L + L +A +ALK GG L V+++HS Sbjct: 193 DIVKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLYAATEALKPGGRLAVITYHS 250 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK + + + A + + P F+ + KV+VP + ++ N RSRSAKLR Sbjct: 251 LEDRIVKNVMKTGNIEGKAEKDFYGNVRAP--FRLVNNKVIVPDESEIERNPRSRSAKLR 308 >gi|330938035|gb|EGH41807.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv. pisi str. 1704B] Length = 246 Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 95/238 (39%), Positives = 142/238 (59%), Gaps = 12/238 (5%) Query: 84 QFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 +F + Q +F++L ++G V G++ DLGVSS Q+D +RGFSF GPLDMRM Sbjct: 6 RFVIVQRSFAELGSETQERGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDGPLDMRMDP 65 Query: 140 S-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198 + G+SA++ + A +++ R+ GEE+ A R+A+A+V RR+ PF+ T DL+ ++ K Sbjct: 66 TCGVSAAEFIATAPAEEIARVFKEYGEERFAKRMANAVVARREVQPFERTADLAEVL-KV 124 Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258 + +PATR+FQ LRI VNNE+ +L GL +A AL+ GG L+V+SFHSLEDR+V Sbjct: 125 ANPAWEKGKNPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLVVISFHSLEDRIV 184 Query: 259 KKFFASRS-GKVMAVRHMIPSNAHPAVFQ---SITKKVVVPTQEDVAFNRRSRSAKLR 312 K F + G+ + +P P F+ I K + + N RSRSA +R Sbjct: 185 KLFMRKLAKGEADNMPRNLPIQYKP--FEPKIKIHGKAQFASDVETKANPRSRSAVMR 240 >gi|326564327|gb|EGE14557.1| S-adenosyl-methyltransferase MraW [Moraxella catarrhalis 103P14B1] gi|326565092|gb|EGE15285.1| S-adenosyl-methyltransferase MraW [Moraxella catarrhalis 46P47B1] gi|326570013|gb|EGE20059.1| S-adenosyl-methyltransferase MraW [Moraxella catarrhalis BC7] gi|326574697|gb|EGE24633.1| S-adenosyl-methyltransferase MraW [Moraxella catarrhalis 101P30B1] Length = 330 Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 111/315 (35%), Positives = 173/315 (54%), Gaps = 24/315 (7%) Query: 20 HVPVLLEKVIAL------LNPAPGKV---ILDATFGAGGYSR---SFCKMGSNVIALDRD 67 H VLL + +A+ LN KV +DATFG GG+S+ + + + D+D Sbjct: 13 HTTVLLPETVAMVLGVKQLNDVTSKVSGVYVDATFGRGGHSQLLLEYLAPEATLAVFDKD 72 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRG 124 P A++ + ++ + + +F+ L + G+D G++ DLGVSS Q+D G RG Sbjct: 73 PEAIAVAK-SLAAQDTRIKVVHDSFAHLTKNLQALGIDKIDGLMADLGVSSPQLDDGTRG 131 Query: 125 FSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 FSF + G +DMRM + G S+ + + + +L +L GEE+ + +IA AI K Q+ Sbjct: 132 FSFMRDGVVDMRMDTTRGEPVSEWLQRVSADELADVLYEYGEERHSRKIARAI-KSMQN- 189 Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 + +T+ L+ +I K + + HPAT+SFQA+RIF+NNE+ ++ L + LKAGG Sbjct: 190 -YTSTRQLAEVI-KQAHPAWQKGKHPATQSFQAMRIFINNELGDVEAFLAQSIGVLKAGG 247 Query: 244 LLIVVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 +L V+SFHSLEDRL+K+F S G+ + P F K V P ++V Sbjct: 248 MLAVISFHSLEDRLIKQFLQRHSRGQYEEDARLPIIPKRPKYFGK--PKRVGPCDQEVKA 305 Query: 303 NRRSRSAKLRAGMRT 317 N R+RSA LR +R+ Sbjct: 306 NPRARSAWLRGAVRS 320 >gi|302671225|ref|YP_003831185.1| S-adenosyl-methyltransferase MraW [Butyrivibrio proteoclasticus B316] gi|302395698|gb|ADL34603.1| S-adenosyl-methyltransferase MraW [Butyrivibrio proteoclasticus B316] Length = 313 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 97/307 (31%), Positives = 162/307 (52%), Gaps = 19/307 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQE 76 H VLL + + LN P + LD T G G+S + G ++ D+D A++ + Sbjct: 5 HYSVLLHECLDNLNIKPDGIYLDGTLGGAGHSFHIAERLDKGGHLYGTDQDEDAIAAATK 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + ++ ++ + + + + GVDG++ DLGVSS Q+D +RGF++++ PL Sbjct: 65 RLEPFSDRVTIIRDNYENAVTRLKNLGVTGVDGILLDLGVSSYQLDNAERGFTYKEDVPL 124 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM ++A D+VN + ++ I+ GE+K A IA I R AP +TT L+ Sbjct: 125 DMRMDQRQTLTARDIVNDYSETEIFHIIRDYGEDKFAKNIAKHICIERAKAPIETTFQLN 184 Query: 193 SLIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + + HP+ R++QA+RI +N E++ L L L GG L V++FH Sbjct: 185 DIIKAAIPAKMREKGGHPSKRTYQAIRIALNRELDVLQNSLDGFIDFLNPGGRLCVITFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF------QSITKKVVVPTQEDVAFNRR 305 SLEDR+ K F + P N V + +T+K ++P+ +++A N+R Sbjct: 245 SLEDRITKNNFRTNENPCTC-----PPNFPVCVCGKKSKGRVVTRKPILPSDQELAENKR 299 Query: 306 SRSAKLR 312 S+SAKLR Sbjct: 300 SQSAKLR 306 >gi|51598567|ref|YP_072755.1| hypothetical protein BG0310 [Borrelia garinii PBi] gi|108868281|sp|Q661V8|RSMH_BORGA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|51573138|gb|AAU07163.1| conserved hypothetical protein [Borrelia garinii PBi] Length = 296 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 100/302 (33%), Positives = 168/302 (55%), Gaps = 24/302 (7%) Query: 20 HVPVLLEKVIALLNPAPGK---VILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 H PVLL+ + L+ P K + +D+T G G ++++ + +++ ++RDP + Sbjct: 7 HFPVLLDAICKLIEDLPVKSDLIYIDSTLGEGAHAKAILEKYDFLSLVGIERDPQILERA 66 Query: 75 QETMRDYKEQFSLFQATFSQL-QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ + +K + + F F +Y + + ++ DLG+S +GFSF + PL Sbjct: 67 KQFLFAFKGRITYFNDWFDNFFVNYPLNAKANFILVDLGISMFHYKGSKKGFSFLEDEPL 126 Query: 134 DMRMSCSGISAS--DVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 DMR+ S S S D+VN + DL ++ L E + RI+ AIV+ R+ +TT++L Sbjct: 127 DMRLCSSSCSISAADIVNTFSKYDLESLIYDLSNEHYSRRISKAIVEYRKIKRIETTKEL 186 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++I K FSK +I+PAT++FQALRI VN+E+ L + L + L G+L +++FH Sbjct: 187 QAVINKVYPFSKA-KINPATKTFQALRICVNDELARLKRSLPLWIENLAKDGILAIITFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 S+EDR+VK FF S S + A I+KK ++P+ +++ N+ SRSAKL Sbjct: 246 SIEDRIVKDFFRSLSCDLYA---------------KISKKPIIPSFDEIKKNKPSRSAKL 290 Query: 312 RA 313 RA Sbjct: 291 RA 292 >gi|323486709|ref|ZP_08092030.1| hypothetical protein HMPREF9474_03781 [Clostridium symbiosum WAL-14163] gi|323400090|gb|EGA92467.1| hypothetical protein HMPREF9474_03781 [Clostridium symbiosum WAL-14163] Length = 314 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 98/303 (32%), Positives = 171/303 (56%), Gaps = 10/303 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76 H VLL++ I L+ P + +D T G GG++ C+ +G I +D+D A++ E Sbjct: 5 HKSVLLDETIESLDIKPDGIYVDGTLGGGGHASEVCRRLGDKGRFIGIDQDADAIAAASE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS-GP 132 ++++ ++ ++ ++ + + + + + G VDG+ DLGVSS Q+D +RGF++++ P Sbjct: 65 RLKEFGDKVTIVRSNYENIDEVLKELGISQVDGIYLDLGVSSYQLDTAERGFTYREDDAP 124 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM ++A D+VN + +L I+ GE++ A IA IV+ RQ +TT +L Sbjct: 125 LDMRMDQRNEMTAKDIVNTYSESELFHIIKNYGEDRFAKNIAKHIVRARQEKEIETTGEL 184 Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+ + + HPA R+FQA+RI +N E+E L + L GG L +++F Sbjct: 185 IEIIKAAIPAKVRATGGHPAKRTFQAIRIELNKELEVLENSIDKMTDLLAPGGRLSIITF 244 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK F + + + +T+K ++P++E+++ N+RS+SA Sbjct: 245 HSLEDRIVKNRFRINENPCTCPPDFPVCMCGKKSKGRVVTRKPILPSEEELSENKRSKSA 304 Query: 310 KLR 312 KLR Sbjct: 305 KLR 307 >gi|309807753|ref|ZP_07701687.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LactinV 01V1-a] gi|308169013|gb|EFO71097.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LactinV 01V1-a] Length = 288 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 97/249 (38%), Positives = 141/249 (56%), Gaps = 13/249 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H VLL + I LN V +DATFG GG++ K SN +I D+D +A+ +++ Sbjct: 7 HYSVLLHETIDNLNLKNDGVYVDATFGGGGHASYLLKQLSNGHLIGFDQDEYAIELAKKS 66 Query: 78 MRDY-----KEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + K + SL F LQ + G+DG+ +DLGVSS Q D +RGFS++ Sbjct: 67 FSEVLKANSKPKLSLVHDNFGNLQQNLAKLGFIDGIDGIYYDLGVSSPQFDQPERGFSYR 126 Query: 129 KSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + LDMRM + A +VN + K+L+ IL G+EK A +IA IV RR P T Sbjct: 127 FNARLDMRMDQTKDLDAYKIVNTWSQKELSNILFKYGDEKYARQIAKNIVARRAIKPITT 186 Query: 188 TQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T +L +I++ + F++ HPA +SFQA+RI VN+E+E L + L A + LK GG + Sbjct: 187 TFELVDIIKEAIPAFARRTGGHPAKKSFQAIRIAVNDELEVLEKSLLEAIEILKPGGRIC 246 Query: 247 VVSFHSLED 255 V++F SLED Sbjct: 247 VITFQSLED 255 >gi|57236996|ref|YP_178797.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni RM1221] gi|68565428|sp|Q5HV88|RSMH_CAMJR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|57165800|gb|AAW34579.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni RM1221] gi|315058156|gb|ADT72485.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp. jejuni S3] Length = 310 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 106/302 (35%), Positives = 166/302 (54%), Gaps = 13/302 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 H+PVLL +V + LD T G GG+S + K ++ IA D+D A+ ++ Sbjct: 5 HIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKNHPDLKFIACDQDQQALEFSKKR 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 ++D++ + + Q+ FS++ + + K + G++ D+GVSS Q+D +RGFS S LDMR Sbjct: 65 LKDFRNRITFMQSNFSEVLEKISHKEELRGILADIGVSSFQLDNNERGFSVN-SDFLDMR 123 Query: 137 MS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M+ S ISA +++N + LT I GE A IA I R P ++ ++L +I Sbjct: 124 MNQNSKISAYEIINTYTKEQLTSIFKDYGELHDAHFIAEKICLERSKNPIKSAKELYQII 183 Query: 196 QKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 K +N+R I AT +FQA+RI VN E++ L L E +L ++SFHSLE Sbjct: 184 GKG---KQNHRKISKATLAFQAIRIEVNQELKVLKDFLGHLENLKPKNCILAIISFHSLE 240 Query: 255 DRLVKKFFASRSGKVMAVRHMIPS---NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 DR+VK+FF S + ++ N H ++ Q ITKK + ++E++ N RS AK+ Sbjct: 241 DRIVKQFFKKWSKNCICNEKIMRCECGNNH-SLGQIITKKAISASKEELLKNSRSSCAKM 299 Query: 312 RA 313 RA Sbjct: 300 RA 301 >gi|305664541|ref|YP_003860828.1| S-adenosyl-methyltransferase MraW [Maribacter sp. HTCC2170] gi|88708558|gb|EAR00794.1| S-adenosyl-methyltransferase MraW [Maribacter sp. HTCC2170] Length = 297 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 110/310 (35%), Positives = 172/310 (55%), Gaps = 29/310 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MG--SNVIALDRDPFAVSCGQE 76 H PVLL++ + L+ V +D TFG GG+S+ K +G ++A D+D A+ Sbjct: 3 HNPVLLKESVEGLDVKKDGVYVDVTFGGGGHSKEILKRLGPKGRLLAFDQDEDALD---N 59 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + D E+F+L F ++ ++ G VDG++ D GVSS Q D +RGFS + L Sbjct: 60 KLGD--ERFTLINENFRYIRQFLKFYGIRKVDGILADFGVSSHQFDKAERGFSTRFDADL 117 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRMS + +SA DVVN DL ++L G+ + A+ +A+ I+ R+ AP +T+ L Sbjct: 118 DMRMSKKNSVSAYDVVNSYEFNDLRKVLFQYGDLRNANAMANKIITSREEAPIKTSAQLK 177 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++++ + K ++I + +QA+RI VN EI+ + + L + L GG L V+S+HS Sbjct: 178 EVLRQFLPKHKEHKI--LAQIYQAIRIEVNQEIQVIKELLEQVPELLNLGGRLSVISYHS 235 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT---KKV---VVPTQEDVAFNRRS 306 LEDRLVK+F R+G + + +I KKV +VP++E+ A N R+ Sbjct: 236 LEDRLVKRFI--RAG-------LFEGEPEKDFYGNIDVPLKKVGGLIVPSREETALNNRA 286 Query: 307 RSAKLRAGMR 316 RSAKLR R Sbjct: 287 RSAKLRIAER 296 >gi|323692152|ref|ZP_08106395.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Clostridium symbiosum WAL-14673] gi|323503726|gb|EGB19545.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Clostridium symbiosum WAL-14673] Length = 314 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 98/303 (32%), Positives = 173/303 (57%), Gaps = 10/303 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76 H VLL++ I L+ P + +D T G GG++ C+ +G I +D+D A++ E Sbjct: 5 HKSVLLDETIESLDIKPDGIYVDGTLGGGGHASEVCRRLGDKGRFIGIDQDADAIAAASE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS-GP 132 ++++ ++ ++ ++ + + + + + G VDG+ DLGVSS Q+D +RGF++++ P Sbjct: 65 RLKEFGDKVTIVRSNYENVDEVLKELGISQVDGIYLDLGVSSYQLDTAERGFTYREDDAP 124 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + ++A D+VN + +L I+ GE++ A IA IV+ RQ +TT +L Sbjct: 125 LDMRMDQRNEMTAKDIVNTYSESELFHIIKNYGEDRFAKNIAKHIVRARQEKEIETTGEL 184 Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+ + + HPA R+FQA+RI +N E+E L + + L GG L +++F Sbjct: 185 IEIIKAAIPAKVRATGGHPAKRTFQAIRIELNKELEVLEKSIDKMTDLLAPGGRLSIITF 244 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK F + + + +T+K ++P++E+++ N+RS+SA Sbjct: 245 HSLEDRIVKNRFRINENPCTCPPDFPVCMCGKKSKGRVVTRKPILPSEEELSENKRSKSA 304 Query: 310 KLR 312 KLR Sbjct: 305 KLR 307 >gi|123965435|ref|YP_001010516.1| S-adenosylmethionine-dependent methyltransferase [Prochlorococcus marinus str. MIT 9515] gi|262824968|sp|A2BUE8|RSMH_PROM5 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|123199801|gb|ABM71409.1| Predicted S-adenosylmethionine-dependent methyltransferase [Prochlorococcus marinus str. MIT 9515] Length = 300 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 104/277 (37%), Positives = 156/277 (56%), Gaps = 25/277 (9%) Query: 41 LDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDY 98 +DAT G GG+S K + +I LD DP A + ++K + + + FS + Sbjct: 39 IDATLGGGGHSYQLLKKYPDLKIIGLDHDPIARESALNKLEEFKSRIEIIPSNFSNFE-- 96 Query: 99 VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLT 157 P + V V+ DLGV+S QID +RGFSFQK GPLDMRM+ ++A +++ + KDL Sbjct: 97 -PKEKVSFVIADLGVNSNQIDSPERGFSFQKDGPLDMRMNPLIKMNAENLIETLSEKDLA 155 Query: 158 RILGILGEEKQASRIAHAIVKR-RQSAPFQTTQDLSSLIQKTVYFSKNNR-IHPATRSFQ 215 ++ G+E+ + +I+ I K ++ + T+DL+ I + R IHPATR+FQ Sbjct: 156 DLIFKFGDERLSRKISRKIKKDLKEKGKYSGTKDLAYSIAGCFPPKQRYRKIHPATRTFQ 215 Query: 216 ALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM 275 ALRI VNNEIE L + L+ A L GG++ ++SFHS+EDRLVK F Sbjct: 216 ALRIAVNNEIEALEKFLKIAPDWLLTGGIISIISFHSIEDRLVKNSFKGD---------- 265 Query: 276 IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 +++TKK + P ++++ N+RSRSAKLR Sbjct: 266 -------YRLKNLTKKPITPNKKEIENNKRSRSAKLR 295 >gi|91216023|ref|ZP_01252992.1| S-adenosyl-methyltransferase MraW [Psychroflexus torquis ATCC 700755] gi|91186000|gb|EAS72374.1| S-adenosyl-methyltransferase MraW [Psychroflexus torquis ATCC 700755] Length = 303 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 107/302 (35%), Positives = 166/302 (54%), Gaps = 17/302 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H+PVLL++ + ++ P +D TFG GG+S ++G + A D+D A E Sbjct: 9 HLPVLLKESVDGMSIQPEGTYVDVTFGGGGHSAEILSRLGEKGRLFAFDQDQDAQENSIE 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 R F+L A F ++ ++ +GV DG++ D GVSS Q D G+RGFS + L Sbjct: 69 DPR-----FTLIPANFRFIKRFLRLEGVNEVDGILGDFGVSSHQFDKGERGFSIRFEAEL 123 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM +G+ AS++VN + + L +++ GE K + ++A AIV+RR P ++T+DL+ Sbjct: 124 DMRMDQNTGLGASELVNTYSQEQLAQLIWQYGEIKMSRKLAKAIVERRIIEPIKSTKDLN 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 L+ T +F + +QA+RI VN E+E L + L + + GG L ++S+HS Sbjct: 184 DLL--TPFFPPTKVNKFLAQVYQAIRIEVNQEMEALKEFLLQTSELITKGGRLSLISYHS 241 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDRLVK+F R GK F+ + K++ P ++ N+RSRSAKLR Sbjct: 242 LEDRLVKRFI--RDGKFSGAPEKDFYGNMLVPFKKVG-KMITPGAAELQKNKRSRSAKLR 298 Query: 313 AG 314 G Sbjct: 299 IG 300 >gi|45657732|ref|YP_001818.1| S-adenosyl-methyltransferase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|88911699|sp|P62472|RSMH_LEPIC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|45600972|gb|AAS70455.1| S-adenosyl-methyltransferase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 334 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 119/336 (35%), Positives = 180/336 (53%), Gaps = 38/336 (11%) Query: 1 MESKSCKTMS--------SAIHHTI-GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYS 51 MES C+T++ +H+++ G + + ++ +P + LD T G GG+S Sbjct: 1 MES-PCRTITLEKNGTSLEPVHYSVQGKEILQIFKENFQKEDPV---LFLDGTAGEGGHS 56 Query: 52 RSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL-QDYVPDKGVD--- 105 F K S +I DRDP +S + D+ E+ Q FS++ Q + G+D Sbjct: 57 FLFLKEFPNSRIILCDRDPIMLSRALTRLSDFSERVVSIQTNFSEINQKLLTSYGIDQTP 116 Query: 106 -GVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGIL 163 G++ DLG+S+ + RGFSF++S PLDMR++ SG SA +++N L I Sbjct: 117 QGILLDLGISTFHLFHSGRGFSFRESEPLDMRLNPNSGQSAEEILNIYPKDRLMNIFYTY 176 Query: 164 GEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV--YFSKNNRIHPATRSFQALRIFV 221 GEE+ + +IA IV+ R+ TT +L++L+ K + F R HPATR FQALRI V Sbjct: 177 GEERWSKKIAEVIVETRKQNSISTTFELANLVSKIIPRKFWPPGR-HPATRIFQALRIEV 235 Query: 222 NNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH 281 N E+ + GL+ L+ GG++ V+SFHSLEDR+VK F R N Sbjct: 236 NQELAHIENGLKLLLDLLRLGGVIQVISFHSLEDRIVKNSF----------RDYAKQNG- 284 Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 F+ +TKK ++P+QE++ N SRSAKLR +T Sbjct: 285 ---FELLTKKPILPSQEEIDENPASRSAKLRILRKT 317 >gi|326567260|gb|EGE17380.1| S-adenosyl-methyltransferase MraW [Moraxella catarrhalis 12P80B1] gi|326572872|gb|EGE22857.1| S-adenosyl-methyltransferase MraW [Moraxella catarrhalis CO72] Length = 330 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 110/315 (34%), Positives = 173/315 (54%), Gaps = 24/315 (7%) Query: 20 HVPVLLEKVIAL------LNPAPGKV---ILDATFGAGGYSR---SFCKMGSNVIALDRD 67 H VLL + +A+ LN KV +DATFG GG+S+ + + + D+D Sbjct: 13 HTTVLLPETVAMVLGVKQLNDVTSKVSGVYVDATFGRGGHSQLLLEYLAPEATLAVFDKD 72 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRG 124 P A++ + ++ + + +F+ L + G+D G++ DLGVSS Q+D G RG Sbjct: 73 PEAIAVAK-SLAAQDTRIKVVHDSFAHLTKNLQALGIDKIDGLMADLGVSSPQLDDGTRG 131 Query: 125 FSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 FSF + G +DMRM + G S+ + + + +L +L GEE+ + +IA AI K Q+ Sbjct: 132 FSFMRDGVVDMRMDTTRGEPVSEWLQRVSADELADVLYEYGEERHSRKIARAI-KSMQN- 189 Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 + +T+ L+ +I K + + HPAT+SFQA+RIF+NNE+ ++ L + LKAGG Sbjct: 190 -YTSTRQLAEVI-KQAHPAWQKGKHPATQSFQAMRIFINNELGDVEAFLAQSIGVLKAGG 247 Query: 244 LLIVVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 +L V+SFHSLEDRL+K+F S G+ + P F K + P ++V Sbjct: 248 MLAVISFHSLEDRLIKQFLQRHSRGQYEEDARLPIIPKRPKYFGK--PKRIGPCDQEVKA 305 Query: 303 NRRSRSAKLRAGMRT 317 N R+RSA LR +R+ Sbjct: 306 NPRARSAWLRGAVRS 320 >gi|325286918|ref|YP_004262708.1| Ribosomal RNA small subunit methyltransferase H [Cellulophaga lytica DSM 7489] gi|324322372|gb|ADY29837.1| Ribosomal RNA small subunit methyltransferase H [Cellulophaga lytica DSM 7489] Length = 298 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 110/307 (35%), Positives = 164/307 (53%), Gaps = 23/307 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H PVLL++ + L+ V +D TFG GG+SR ++G +I D+D A++ + Sbjct: 4 HNPVLLKESVDGLSIKEDGVYVDVTFGGGGHSREILSRLGEKGRLIGFDQDEDALANALD 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 R F L F ++ ++ G VDG++ D GVSS Q D +RGFS + L Sbjct: 64 DDR-----FLLINENFRYIKQFLKFHGIRKVDGILGDFGVSSHQFDKAERGFSTRFDADL 118 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRMS +SA DVVN DL R+L G+ + A+ +A+ I+ RQ +TT L Sbjct: 119 DMRMSQKNTVSAFDVVNNYEYNDLRRVLFQYGDLRSANAMANTIIDYRQEGEIKTTDQLK 178 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +++K + K ++I + +QA+RI VN EI+ + + L L GG L ++S+HS Sbjct: 179 QVLKKFLPAFKEHKI--LAQIYQAIRIEVNQEIQVIKEFLEQTNDLLVEGGRLSLISYHS 236 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV---VVPTQEDVAFNRRSRSA 309 LEDRLVK++ R+GK P KKV +VP++E++A N R+RSA Sbjct: 237 LEDRLVKRYI--RAGKFEGE----PEKDFYGNIDVPFKKVGGLIVPSKEEIAVNNRARSA 290 Query: 310 KLRAGMR 316 KLR R Sbjct: 291 KLRIAER 297 >gi|304373145|ref|YP_003856354.1| Ribosomal RNA small subunit methyltransferase H [Mycoplasma hyorhinis HUB-1] gi|304309336|gb|ADM21816.1| Ribosomal RNA small subunit methyltransferase H [Mycoplasma hyorhinis HUB-1] Length = 298 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 104/310 (33%), Positives = 159/310 (51%), Gaps = 24/310 (7%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQE 76 DH+PVLL++VI LN + LD T G GG+S K +I D+D A+ +E Sbjct: 2 DHIPVLLDQVIDQLNIKEDGIYLDLTLGRGGHSSQILKKLTSGKLIVFDKDKQAIEQTKE 61 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + F + VDGV+ DLGVSS Q+D +RGFS+ K L Sbjct: 62 KLLKISSNIEFIWSDFKDFDQELKKLQINKVDGVLLDLGVSSPQLDQANRGFSYNKQARL 121 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ SA ++VN+ + + L I G+ A+ IA IVK R P T +L Sbjct: 122 DMRMNQAQSFSAYELVNEYSKEKLVNIFTNYGQVPFANNIAENIVKLR---PITYTTELV 178 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I++++ + +PA FQA+RI VN E+E L L +K LK G L +++FHS Sbjct: 179 DIIKQSLPNFVLRKKNPAKNVFQAIRIEVNQELESLNIFLSKIDKFLKKDGKLAIITFHS 238 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT----QEDVAFNRRSRS 308 LED++VK +F + ++ N F++ K +V T Q+++ N+R++S Sbjct: 239 LEDKIVKNYF----------KQLLKQN-QTLFFETTQAKYLVKTTWANQKEIDNNKRAKS 287 Query: 309 AKLRAGMRTV 318 AKLR + + Sbjct: 288 AKLRVLTKLI 297 >gi|121613568|ref|YP_001000389.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp. jejuni 81-176] gi|167005332|ref|ZP_02271090.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp. jejuni 81-176] gi|263445762|sp|A1VZ48|RSMH_CAMJJ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|87249530|gb|EAQ72490.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp. jejuni 81-176] Length = 310 Score = 157 bits (396), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 106/302 (35%), Positives = 165/302 (54%), Gaps = 13/302 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 H+PVLL +V + LD T G GG+S + K ++ IA D+D A+ ++ Sbjct: 5 HIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKNHPDLKFIACDQDQQALEFSKKR 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 ++D+ + + Q+ FS++ + + K + G++ D+GVSS Q+D +RGFS S LDMR Sbjct: 65 LKDFHNRITFVQSNFSEVLEKISHKEELRGILADIGVSSFQLDNNERGFSVN-SDFLDMR 123 Query: 137 MS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M+ S ISA +++N + LT I GE A IA I R P ++ ++L +I Sbjct: 124 MNQNSKISAYEIINTYTKEQLTSIFKDYGELHDAHFIAEKICLERSKNPIKSAKELYQII 183 Query: 196 QKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 K +N+R I AT +FQA+RI VN E++ L L E +L ++SFHSLE Sbjct: 184 GKG---KQNHRKISKATLAFQAIRIEVNQELKVLKDFLEHLENLKPKNCILAIISFHSLE 240 Query: 255 DRLVKKFFASRSGKVMAVRHMIPS---NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 DR+VK+FF S + ++ N H ++ Q ITKK + ++E++ N RS AK+ Sbjct: 241 DRIVKQFFKKWSKNCICNEKIMRCECGNNH-SLGQIITKKAISASKEELLKNSRSSCAKM 299 Query: 312 RA 313 RA Sbjct: 300 RA 301 >gi|296113990|ref|YP_003627928.1| S-adenosyl-methyltransferase MraW [Moraxella catarrhalis RH4] gi|295921684|gb|ADG62035.1| S-adenosyl-methyltransferase MraW [Moraxella catarrhalis RH4] Length = 333 Score = 157 bits (396), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 110/315 (34%), Positives = 173/315 (54%), Gaps = 24/315 (7%) Query: 20 HVPVLLEKVIAL------LNPAPGKV---ILDATFGAGGYSR---SFCKMGSNVIALDRD 67 H VLL + +A+ LN KV +DATFG GG+S+ + + + D+D Sbjct: 16 HTTVLLPETVAMVLGVKQLNDVTSKVSGVYVDATFGRGGHSQLLLEYLAPEATLAVFDKD 75 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRG 124 P A++ + ++ + + +F+ L + G+D G++ DLGVSS Q+D G RG Sbjct: 76 PEAIAVAK-SLAAQDTRIKVVHDSFAHLTKNLQALGIDKIDGLMADLGVSSPQLDDGTRG 134 Query: 125 FSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 FSF + G +DMRM + G S+ + + + +L +L GEE+ + +IA AI K Q+ Sbjct: 135 FSFMRDGVVDMRMDTTRGEPVSEWLQRVSADELADVLYEYGEERHSRKIARAI-KSMQN- 192 Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 + +T+ L+ +I K + + HPAT+SFQA+RIF+NNE+ ++ L + LKAGG Sbjct: 193 -YTSTRQLAEVI-KQAHPAWQKGKHPATQSFQAMRIFINNELGDVEAFLAQSIGVLKAGG 250 Query: 244 LLIVVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 +L V+SFHSLEDRL+K+F S G+ + P F K + P ++V Sbjct: 251 MLAVISFHSLEDRLIKQFLQRHSRGQYEEDARLPIIPKRPKYFGK--PKRIGPCDQEVKA 308 Query: 303 NRRSRSAKLRAGMRT 317 N R+RSA LR +R+ Sbjct: 309 NPRARSAWLRGAVRS 323 >gi|87123572|ref|ZP_01079423.1| methyltransferase [Synechococcus sp. RS9917] gi|86169292|gb|EAQ70548.1| methyltransferase [Synechococcus sp. RS9917] Length = 305 Score = 157 bits (396), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 109/308 (35%), Positives = 166/308 (53%), Gaps = 31/308 (10%) Query: 20 HVPVLLEKVIALL----NPAPGK-VILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVS 72 HVPVL + ++ L +P + ++LDAT G GG+SR + G ++I LD+D A + Sbjct: 14 HVPVLADVLLQALQEHADPRWQQGLLLDATLGGGGHSRLLLEHYPGLHLIGLDQDSTARA 73 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + E+ + F+ Y P++ V ++ DLGVSS Q+D +RGFSF+ +GP Sbjct: 74 AAAEHLLPCAERVRIVATNFAT---YRPEEPVALLLADLGVSSPQLDVAERGFSFRHNGP 130 Query: 133 LDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAI-VKRRQSAPFQTTQ 189 LDMRM+ G +A++++ + DL ++ GEE+ + RIA I + T Sbjct: 131 LDMRMNPEGGGETAAELIARLEESDLADLIYAYGEERLSRRIARRIKADLAAQGAYAGTA 190 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ I ++ RIHPATR+FQALRI +N+E+ L + L +A L+ GGLL ++ Sbjct: 191 ALAYAIAGCYPPKARRGRIHPATRTFQALRIAINDELGVLDKLLSAAPDWLQPGGLLAII 250 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDR VK F + IT++ +V ++++ N RSRS Sbjct: 251 SFHSLEDRRVKTAFLQDQ-----------------RLERITRRPLVASEQEQERNPRSRS 293 Query: 309 AKLRAGMR 316 AKLR R Sbjct: 294 AKLRIARR 301 >gi|295135641|ref|YP_003586317.1| S-adenosyl-methyltransferase MraW [Zunongwangia profunda SM-A87] gi|294983656|gb|ADF54121.1| S-adenosyl-methyltransferase MraW [Zunongwangia profunda SM-A87] Length = 298 Score = 157 bits (396), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 107/306 (34%), Positives = 171/306 (55%), Gaps = 29/306 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76 H PVLL++ + LN P V +D TFG GG+SR K +G + + A D+D A+ E Sbjct: 4 HNPVLLKESVDGLNIKPDGVYVDVTFGGGGHSREILKRLGEHGKLFAFDQDTDALQNKIE 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 R F+L F L+ ++ GV DG++ D GVSS Q + +RGFS + + L Sbjct: 64 DPR-----FTLINENFRFLKRFLRFYGVKKVDGILGDFGVSSHQFNEAERGFSTRFNAKL 118 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S +SA V+N+ + + L + + K A ++A IV R++ P + ++DL+ Sbjct: 119 DMRMDQSNSLSAYQVINEYDEEQLKSLFYQYADLKNAPKLARIIVSERKNKPIENSEDLN 178 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 L++ ++ K N+I + +QA+RI VN EIE L + L E ++ G + ++S+HS Sbjct: 179 ELLKPHLFKGKENKI--LAQIYQAIRIEVNQEIEVLKEFLLQTEDLVEKNGRISLISYHS 236 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT---KKV---VVPTQEDVAFNRRS 306 LEDRLVK++ RSG + + +I+ KKV +VP++++++ N R+ Sbjct: 237 LEDRLVKRYI--RSG-------LFEGEPEKDFYGNISVPFKKVGGLIVPSKQEISENNRA 287 Query: 307 RSAKLR 312 RSAKLR Sbjct: 288 RSAKLR 293 >gi|307108403|gb|EFN56643.1| hypothetical protein CHLNCDRAFT_144447 [Chlorella variabilis] Length = 468 Score = 157 bits (396), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 96/232 (41%), Positives = 127/232 (54%), Gaps = 24/232 (10%) Query: 104 VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGI 162 VD ++ DLG+SSMQ+D DRGFSF + GPLDMRM + +SA VN +L R++ Sbjct: 233 VDAILLDLGISSMQVDTADRGFSFLRDGPLDMRMDPAAPLSAELAVNTWPEGELGRVIRE 292 Query: 163 LGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRI--------------- 207 GEE+ IA IV R+ AP TTQ L I Sbjct: 293 YGEERHWRGIARRIVAAREEAPITTTQQLVRAIGSPGGGGGGGGGRGRGRRSGGGDARFK 352 Query: 208 HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSG 267 HPATR+FQALRI VN E++ +AQ L A + L GG L V++FHSLEDR+VK F + +G Sbjct: 353 HPATRTFQALRIAVNGELQSIAQALPDAIECLAPGGRLAVITFHSLEDRIVKWAFRAAAG 412 Query: 268 KVMAVRHMIPSNAHP-------AVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 + +PS P A + +T++ V P++E+ A N RSRSAKLR Sbjct: 413 MAPS-DEQLPSYCLPFEEAAAQASVRILTRRPVAPSEEEQAANVRSRSAKLR 463 >gi|156083547|ref|XP_001609257.1| S-adenosyl methyltransferase [Babesia bovis T2Bo] gi|154796508|gb|EDO05689.1| S-adenosyl methyltransferase, putative [Babesia bovis] Length = 420 Score = 157 bits (396), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 116/333 (34%), Positives = 172/333 (51%), Gaps = 43/333 (12%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H PVLL++ + +L P LD T G GG++ + K+ S ++ALDRDP +V + Sbjct: 98 HEPVLLKEALDMLVIDPDGRYLDLTLGYGGHTEAILKLLSPKGVLVALDRDPESVYYTSK 157 Query: 77 TMRDY--KEQFSLFQATFSQLQ-----DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 + Y +Q TFS L + +P K G++ DLG+S+ Q++ RGF++ Sbjct: 158 RLEQYVRSKQLVPVIGTFSNLNSVLESNNLPLKDYTGIIADLGISTHQLEDPKRGFAYNT 217 Query: 130 SGPLDMRMSC------------------SGISASDVVNQANVKDLTRILGILGEEKQASR 171 GPLDMRMS +G A ++N+ +D+ +L GEE +A Sbjct: 218 DGPLDMRMSNPLYDPFNPRDDIVKPNLDTGNIAFKLINKGREQDIAYVLREYGEEPRAII 277 Query: 172 IAHAIVKRRQS-APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQ 230 IA IV++RQ TT L ++ V + + +R FQALRI+VNNE++ELA Sbjct: 278 IARRIVEKRQRLGEIATTFQLRDIVLSCVRGNHKAGMKTLSRVFQALRIYVNNELDELAH 337 Query: 231 GLRSAEKALKAG-GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT 289 L A L G +V+S+HSLEDR VK F + ++ M SN ++ IT Sbjct: 338 LLDHAPSILNPKQGRFVVISYHSLEDRAVKHAFTG----LQKLKTM--SNDS---YKVIT 388 Query: 290 KKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSI 322 KK V PT E+ N+++RSAKLR +ERS+ Sbjct: 389 KKCVTPTLEECTSNQKARSAKLRC----LERSM 417 >gi|15238896|ref|NP_196652.1| mraW methylase family protein [Arabidopsis thaliana] gi|8979725|emb|CAB96846.1| putative protein [Arabidopsis thaliana] gi|16604434|gb|AAL24223.1| AT5g10910/T30N20_180 [Arabidopsis thaliana] gi|28416479|gb|AAO42770.1| At5g10910/T30N20_180 [Arabidopsis thaliana] gi|332004225|gb|AED91608.1| mraW methylase family protein [Arabidopsis thaliana] Length = 434 Score = 157 bits (396), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 112/335 (33%), Positives = 167/335 (49%), Gaps = 42/335 (12%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ- 75 HVPV+L +V+ + + + +D T GA G+S S + N + +D DP A G Sbjct: 95 HVPVMLGEVLDIFSSVRLRSFVDCTLGAAGHSSSIIQSHSELKNFVGMDVDPVARKLGHF 154 Query: 76 -------ETMRD--YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126 T++ + F ++ + Q + D GVDG++ DLG+SSMQ++ +RGFS Sbjct: 155 HIDSLMHPTLKASIVLKNFKYIKSVIADTQPELLDVGVDGILMDLGMSSMQVNNPERGFS 214 Query: 127 FQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 + GPLDMRM ++A D+VN +L R+L GEE + + IVK R + Sbjct: 215 VLQEGPLDMRMDPQATLTAEDIVNSWPESELGRVLRDYGEESNWYLLQNRIVKARLNGGL 274 Query: 186 QTTQDLSSLIQKTVYFSKNNR---IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 +T +L LI+ T S+ R I ATR FQ LRI VN+E++ L L S+ L G Sbjct: 275 HSTGELVDLIRGTSPASRGGRQGWIKTATRVFQGLRIAVNDELKTLQNSLYSSFDVLAPG 334 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSG-----------------KVMAVRHMIPSNAHPAVF 285 G L V+SFHSLEDR+VK+ F G ++ + Sbjct: 335 GRLAVISFHSLEDRVVKQTFLDILGFQREEINGEGSSVKPERQIEERVEKELKEKEEWIK 394 Query: 286 QSI--------TKKVVVPTQEDVAFNRRSRSAKLR 312 Q++ TK+ + P++E+ NRR+RSAKLR Sbjct: 395 QTVIASKGVILTKRPITPSEEEERLNRRARSAKLR 429 >gi|294660427|ref|NP_853182.2| S-adenosyl-L-methionine-dependent methyltransferase mraW [Mycoplasma gallisepticum str. R(low)] gi|298286859|sp|Q7NB79|RSMH_MYCGA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|284812086|gb|AAP56750.2| S-adenosyl-L-methionine-dependent methyltransferase mraW [Mycoplasma gallisepticum str. R(low)] gi|284930664|gb|ADC30603.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Mycoplasma gallisepticum str. R(high)] Length = 313 Score = 156 bits (395), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 105/304 (34%), Positives = 163/304 (53%), Gaps = 19/304 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H PVLL++VI L + LD T G GG+S + K+ + +I D+D A++ + Sbjct: 9 HYPVLLKEVIENLITTKDGIYLDLTIGFGGHSYNIIKILDQKARLIGFDQDLKAIAHCNQ 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ SL F L+ ++ +DG + DLGVSS Q+D DRGFS+ G L Sbjct: 69 LFSEF-NNVSLINDNFVNLKKHLQLMQIDNIDGCLIDLGVSSYQLDQADRGFSYHSLGRL 127 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + + A+ ++ + V +L +I+ GE K R+ A+ K + T + + Sbjct: 128 DMRMDQNKAVDATKLIQNSTVSELVKIMKNYGEIKDPYRVVVALKKAFEKKELNTLE-VV 186 Query: 193 SLIQKTV-----YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 LI+K V Y +K HPA R FQALRI VNNE+E L + L L GG + + Sbjct: 187 ELIKKHVNKAELYANK----HPARRYFQALRIAVNNELEVLEKLLSYLPSYLNKGGKIAI 242 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 ++FHSLE+++VKK F + + ++ ++ +N + + K + PTQ ++ NRRSR Sbjct: 243 ITFHSLEEKIVKKVFRHLAS-ISSLNNLPINNELLKKYHNHFNKGLSPTQSELETNRRSR 301 Query: 308 SAKL 311 SAKL Sbjct: 302 SAKL 305 >gi|283798338|ref|ZP_06347491.1| S-adenosyl-methyltransferase MraW [Clostridium sp. M62/1] gi|291073921|gb|EFE11285.1| S-adenosyl-methyltransferase MraW [Clostridium sp. M62/1] gi|295092799|emb|CBK78906.1| S-adenosyl-methyltransferase MraW [Clostridium cf. saccharolyticum K10] Length = 317 Score = 156 bits (395), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 101/303 (33%), Positives = 171/303 (56%), Gaps = 10/303 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76 H VLL + + LN P + +D T G GG++ S G +I LD+D A++ E Sbjct: 5 HTSVLLYETVDSLNIRPDGIYVDGTLGGGGHASLVLSRLGEGGRLIGLDQDADAIAAATE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS-GP 132 ++ Y ++ ++ + + +++ + G VDG+ DLGVSS Q+D +RGF++++ P Sbjct: 65 RLKPYGDRVTVIRTNYENIKEALASLGIAKVDGIYLDLGVSSYQLDTAERGFTYREDDAP 124 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM +A D+VN + +L RI+ GE++ A IA IVK RQ +T +L Sbjct: 125 LDMRMDQRRSETAKDIVNGYSEMELYRIIRDYGEDRFAKNIAKHIVKARQEKEIETAGEL 184 Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 + +I+ + + HPA R+FQA+RI +N E++ L + + + L GG L V++F Sbjct: 185 TEIIRAAIPAKIRATGGHPAKRTFQAIRIELNRELQVLENSIDTMIELLNPGGRLSVITF 244 Query: 251 HSLEDRLVK-KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK +F + + + + + +T+K ++P+ E+++ N+RS+SA Sbjct: 245 HSLEDRIVKNRFRINENPCTCPPEFPVCMCGKKSRGRVVTRKPILPSDEELSANKRSKSA 304 Query: 310 KLR 312 KLR Sbjct: 305 KLR 307 >gi|256820422|ref|YP_003141701.1| S-adenosyl-methyltransferase MraW [Capnocytophaga ochracea DSM 7271] gi|256582005|gb|ACU93140.1| S-adenosyl-methyltransferase MraW [Capnocytophaga ochracea DSM 7271] Length = 304 Score = 156 bits (395), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 112/304 (36%), Positives = 160/304 (52%), Gaps = 17/304 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76 H PVLL + I LN +D TFG GG+SR K +G N + A D+D A++ Sbjct: 8 HTPVLLTQSIEGLNIKDNGTYVDVTFGGGGHSREILKHLGKNGRLYAFDQDADALN---N 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 T+ D E+F+L Q F L+ Y+ GV DGV+ D GVSS Q D +RGFS + G L Sbjct: 65 TIDD--ERFTLIQQNFKYLRQYLRFYGVTQVDGVLGDFGVSSHQFDVAERGFSTRFEGTL 122 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +SA +VVN+ +LT I GE K A IA AI+ R+ P + +L Sbjct: 123 DMRMNQQAPLSAQEVVNEYGEIELTHIFFQYGELKNAKAIARAIISYREQKPIRLGSELQ 182 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++ + K N++ + +QA+RI VN EIE L L +K G + ++S+HS Sbjct: 183 EAVKALLPKFKENKV--LAQIYQAIRIEVNAEIEALESFLLQLPAVVKPQGRISLISYHS 240 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR VK+F R G++ F+ + ++ P ++A N R+RSAKLR Sbjct: 241 LEDRCVKRFI--RDGQLEGAPEKDWYGNVSVPFKKVG-GLITPDDTEIAQNSRARSAKLR 297 Query: 313 AGMR 316 R Sbjct: 298 IAER 301 >gi|161870663|ref|YP_001599836.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis 053442] gi|161596216|gb|ABX73876.1| S-adenosyl-methyltransferase mraW [Neisseria meningitidis 053442] Length = 264 Score = 156 bits (395), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 94/230 (40%), Positives = 135/230 (58%), Gaps = 3/230 (1%) Query: 90 ATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM-SCSGISASDVV 148 A+F D + VDG +FDLG+SS QID G RGFSF+ PLDMRM + G+SA++ + Sbjct: 20 ASFQTALDGLGIGKVDGALFDLGISSPQIDDGSRGFSFRFDAPLDMRMDTMRGMSAAEWI 79 Query: 149 NQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIH 208 A+ +DL ++ GEE+ + +IA AIV +R +P TT+ L+ ++ + V + + Sbjct: 80 AVASEQDLHEVIKNYGEERFSRQIARAIVAQRAESPIDTTRKLAQIVAQNVRTRERGQ-D 138 Query: 209 PATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGK 268 PATR+FQA+RIF+N E+EE+ L LK GG L V++FHSLEDR+VK+F S Sbjct: 139 PATRTFQAIRIFINRELEEVGAVLPQVMCRLKEGGRLAVIAFHSLEDRIVKQFVKKYSQH 198 Query: 269 VMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 R A P I + + P + ++A N R+RSA LR RT Sbjct: 199 APLPRWAAVREADLPEPPLKIAGRALKPGEAEIAANPRARSAVLRVAERT 248 >gi|24214745|ref|NP_712226.1| S-adenosyl-methyltransferase [Leptospira interrogans serovar Lai str. 56601] gi|42559478|sp|Q8F4J6|RSMH_LEPIN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|24195744|gb|AAN49244.1| S-adenosyl-methyltransferase [Leptospira interrogans serovar Lai str. 56601] Length = 334 Score = 156 bits (395), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 119/336 (35%), Positives = 179/336 (53%), Gaps = 38/336 (11%) Query: 1 MESKSCKTMS--------SAIHHTI-GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYS 51 MES C+T++ +H+++ G + + ++ +P + LD T G GG+S Sbjct: 1 MES-PCRTITLEKNGTSLEPVHYSVQGKEILQIFKENFQKEDPV---LFLDGTAGEGGHS 56 Query: 52 RSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL-QDYVPDKGVD--- 105 F K S +I DRDP +S + D+ E+ Q FS++ Q + G+D Sbjct: 57 FLFLKEFPNSRIILCDRDPIMLSRALTRLSDFSERVVSIQTNFSEINQKLLTSYGIDQTP 116 Query: 106 -GVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGIL 163 G++ DLG+S+ + RGFSF++S PLDMR++ SG SA +++N L I Sbjct: 117 QGILLDLGISTFHLFHSGRGFSFRESEPLDMRLNPNSGQSAEEILNIYPKDRLMNIFYTY 176 Query: 164 GEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV--YFSKNNRIHPATRSFQALRIFV 221 GEE+ + +IA IV+ R+ TT +L++L+ K + F R HPATR FQALRI V Sbjct: 177 GEERWSKKIAEVIVETRKQNSISTTFELANLVSKIIPRKFWPPGR-HPATRIFQALRIEV 235 Query: 222 NNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH 281 N E+ + GL+ L+ GG++ V+SFHSLEDR+VK F R N Sbjct: 236 NQELAHIENGLKLLLDLLRLGGVIQVISFHSLEDRIVKNSF----------RDYAKQNG- 284 Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 F+ +TKK + P+QE++ N SRSAKLR +T Sbjct: 285 ---FELLTKKPIFPSQEEIDENPASRSAKLRILRKT 317 >gi|223040364|ref|ZP_03610639.1| S-adenosyl-methyltransferase MraW [Campylobacter rectus RM3267] gi|222878322|gb|EEF13428.1| S-adenosyl-methyltransferase MraW [Campylobacter rectus RM3267] Length = 310 Score = 156 bits (394), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 102/300 (34%), Positives = 165/300 (55%), Gaps = 12/300 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 HVPVLL++V+ VI+D T G GG+S + + NV IA D+D A++ E Sbjct: 5 HVPVLLDEVLRAFEGIKSGVIVDCTLGYGGHSGAILEQNQNVNLIACDQDEEAINFSSER 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 ++ + ++ +F++ FS++ + + + G++ D+GVSS+Q+D +RGF KS LDMRM Sbjct: 65 LKKFGQRAQIFKSKFSEILNKIEQTQIRGILADIGVSSLQLDKNERGFGL-KSENLDMRM 123 Query: 138 SCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 SA DVVN + ++L RI GE ++ A IV+ RQ+ ++ + L+ +I Sbjct: 124 DAQAKFSAYDVVNSYSARELERIFEGYGELPNPAKFAAKIVEARQNGEIKSAERLAQIIG 183 Query: 197 -KTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 K V N R + AT +FQA+RI VNNE+ EL L+ E + ++ ++ FHSLE Sbjct: 184 LKGV----NGRSVSAATLAFQAIRIEVNNELGELQNLLQGIEDSQIDECVVAIIGFHSLE 239 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 DR+VK F + + + A+ + ++KK + P+ +V N RS AK+R Sbjct: 240 DRIVKNKFKQWAQSCICPPQALKCTCGGDNALGKIVSKKAITPSAAEVKANPRSSCAKMR 299 >gi|148651949|ref|YP_001279042.1| S-adenosyl-methyltransferase MraW [Psychrobacter sp. PRwf-1] gi|262825202|sp|A5WBQ1|RSMH_PSYWF RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|148571033|gb|ABQ93092.1| S-adenosyl-methyltransferase MraW [Psychrobacter sp. PRwf-1] Length = 339 Score = 156 bits (394), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 105/303 (34%), Positives = 160/303 (52%), Gaps = 15/303 (4%) Query: 23 VLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQETMR 79 VL EK + P + +DATFG GG+S+ ++ + + D+DP A+ + Sbjct: 31 VLGEKSLNDNTPKHDGIYVDATFGRGGHSKLLLNYLSDDAKLFVFDKDPEAIDVANDLAA 90 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + K + + +F+ + + +GV DG++ DLGVSS Q+D G RGFSF + G +DMR Sbjct: 91 EDK-RVIVVHDSFADMTQCLNSRGVSQVDGIMADLGVSSPQLDDGSRGFSFMRDGAIDMR 149 Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M S G + + + + L +L GEE+ + RIA AI Q + +T +L+ +I Sbjct: 150 MDTSRGQPVGEWLQTVDEETLADVLYDFGEERHSRRIARAIKGMTQ---YTSTLELAEVI 206 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 K + HPAT+SFQA+RIF+NNE+ ++ L + L G L V+SFHSLED Sbjct: 207 -KQAHPKWQKGKHPATQSFQAMRIFINNELGDIDSFLAQSLTLLAPQGQLAVISFHSLED 265 Query: 256 RLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 R +K+F S G+ ++ P F K + P++ +V N RSRSA LR Sbjct: 266 RRIKQFLQRHSRGQYPEDENLPMPPQRPRYFSK--PKRIAPSKAEVTVNNRSRSAWLRVA 323 Query: 315 MRT 317 RT Sbjct: 324 TRT 326 >gi|330723232|gb|AEC45602.1| Ribosomal RNA small subunit methyltransferase H [Mycoplasma hyorhinis MCLD] Length = 298 Score = 156 bits (394), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 104/310 (33%), Positives = 158/310 (50%), Gaps = 24/310 (7%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQE 76 DH+PVLL++VI LN + LD T G GG+S K +I D+D A+ +E Sbjct: 2 DHIPVLLDQVIDQLNIKEDGIYLDLTLGRGGHSSQILKKLTSGKLIVFDKDKQAIEQTKE 61 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + F + VDGV+ DLGVSS Q+D +RGFS+ K L Sbjct: 62 KLLKISSNIEFIWSDFKDFDQELKKLQINKVDGVLLDLGVSSPQLDQANRGFSYNKQARL 121 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ SA ++VN+ + + L I G+ A+ IA IVK R P T +L Sbjct: 122 DMRMNQAQSFSAYELVNEYSKEKLVNIFTNYGQVPFANNIAEDIVKLR---PITYTTELV 178 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ ++ + +PA FQA+RI VN E+E L L +K LK G L +++FHS Sbjct: 179 DIIKHSLPNFVLRKKNPAKNVFQAIRIEVNQELESLNIFLSKIDKFLKKDGKLAIITFHS 238 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT----QEDVAFNRRSRS 308 LED++VK +F + ++ N F++ K +V T Q+++ N+R++S Sbjct: 239 LEDKIVKNYF----------KQLLKQN-QTLFFETTQAKYLVKTTWANQKEIDNNKRAKS 287 Query: 309 AKLRAGMRTV 318 AKLR + + Sbjct: 288 AKLRVLTKLI 297 >gi|119599130|gb|EAW78724.1| hCG2022166, isoform CRA_b [Homo sapiens] Length = 333 Score = 156 bits (394), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 103/323 (31%), Positives = 155/323 (47%), Gaps = 88/323 (27%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCGQET 77 H+PV++++V+ L+P G++ LD TFG+GG++++ + S+++ ALDRDP A + + Sbjct: 72 HIPVMVDEVVHCLSPQKGQIFLDMTFGSGGHTKAILQKESDIVLYALDRDPTAYALAEHL 131 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 Y +Q FSQ + + GV DGV+ DLG SSMQ+D +RG S Sbjct: 132 SELYPKQIRAMLGQFSQAEALLMKAGVQPGTFDGVLMDLGCSSMQLDTPERGSSL----- 186 Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 R+ P D Sbjct: 187 -----------------------------------------------RKDGPLDIRMD-- 197 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 L+Q++ Y AT++FQALRIFVNNE+ EL GL++A+K L+ GG L+ +SFHS Sbjct: 198 DLLQQSTYI--------ATKTFQALRIFVNNELNELYTGLKTAQKFLRLGGRLVALSFHS 249 Query: 253 LEDRLVKKFFASRSGKV---MAVRHMIPSNAH----------------PAVFQSITKKVV 293 LEDR+VK+F S ++VR + + P +++ I KKV+ Sbjct: 250 LEDRIVKRFLLGISMTERFNLSVRQQVMKTSQLGSDHENTEEVSMRRAPLMWELIHKKVL 309 Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316 P +DV N R RSAKLRA ++ Sbjct: 310 SPQDQDVQDNPRGRSAKLRAAIK 332 >gi|187918180|ref|YP_001883743.1| S-adenosyl-methyltransferase MraW [Borrelia hermsii DAH] gi|263445877|sp|B2S017|RSMH_BORHD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|119861028|gb|AAX16823.1| S-adenosyl-methyltransferase MraW [Borrelia hermsii DAH] Length = 297 Score = 156 bits (394), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 101/308 (32%), Positives = 165/308 (53%), Gaps = 24/308 (7%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCG 74 H PVLL+++I LL G + +D T G GG+S + + N VI ++RD ++ Sbjct: 6 HTPVLLDEIINLLEIVYVNDGFIFVDCTLGEGGHSSAVLRKYQNISVIGIERDDIILNRA 65 Query: 75 QETMRDYKEQFSLFQATFSQL-QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +E + ++K + S F A F +Y + ++ DLG+S RGFSF + L Sbjct: 66 KEFLVEFKGKVSYFNAWFDDFFSEYSLSSKANFILADLGISMFHYKMSGRGFSFFEDERL 125 Query: 134 DMRMS--CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 DMR++ G+SA D+VN + L ++ G E + RI +I++ R+ +T+++L Sbjct: 126 DMRLNPGAGGLSAYDIVNTFDKVRLENLIYEFGGEHYSKRIVSSILEYRKIKKIKTSREL 185 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I K Y +I+PAT++FQALRI+VN+E+ L + L +L G+L +++FH Sbjct: 186 QGIISKA-YPRIKLKINPATKTFQALRIYVNDELFRLKRSLPLWVGSLSRNGILAIITFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLED++VK+FF S + + +TKK ++ + E+ N SRSAKL Sbjct: 245 SLEDKIVKEFFKGLSKEQYCI---------------LTKKPIIASFEEKRCNNASRSAKL 289 Query: 312 RAGMRTVE 319 RA + E Sbjct: 290 RAIRKLYE 297 >gi|291522688|emb|CBK80981.1| S-adenosyl-methyltransferase MraW [Coprococcus catus GD/7] Length = 313 Score = 156 bits (394), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 99/315 (31%), Positives = 168/315 (53%), Gaps = 21/315 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQE 76 H VLL + I L+ + +D T G GG++ + ++G +I +D+D A+ E Sbjct: 5 HYSVLLNETIEQLDIKENGIYVDGTLGGGGHASAVLQRLGETGRLIGIDQDAAAIEAAGE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + ++ ++ ++ +S + + D GVDG+V DLGVSS Q+D +RGF++++ L Sbjct: 65 RLAPFGDKVTIVRSNYSAMPQVLADLGIHGVDGIVLDLGVSSYQLDTVERGFTYREDTVL 124 Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM +A D+VN +L ++ GE+K A IA IV R+ P +TT +L+ Sbjct: 125 DMRMDQRQTKTARDIVNDYTETELFHMIRDYGEDKFARNIAKHIVMAREKKPIETTGELN 184 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + + HP+ +++QA+RI +N+E++ L L L G + V++FH Sbjct: 185 DIIRAAIPAKVRAKGGHPSKKTYQAIRIELNHELDVLKNTLDQMIDLLNDHGRICVITFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF-------QSITKKVVVPTQEDVAFNR 304 SLEDR+VK F + R + P + IT+K ++P++E++ N Sbjct: 245 SLEDRIVKNIFNTNE------RPCTCPPSFPVCVCGKKSKGRVITRKPILPSEEELEVNS 298 Query: 305 RSRSAKLRAGMRTVE 319 RS+SAKLR R E Sbjct: 299 RSKSAKLRVFERIRE 313 >gi|283956102|ref|ZP_06373589.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp. jejuni 1336] gi|283792422|gb|EFC31204.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp. jejuni 1336] Length = 310 Score = 156 bits (394), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 106/302 (35%), Positives = 164/302 (54%), Gaps = 13/302 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 H+PVLL +V + LD T G GG+S + K ++ IA D+D A+ ++ Sbjct: 5 HIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKNHPDLKFIACDQDQQALEFSKKR 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 ++D+ + + Q+ FS++ + + K + G++ D+GVSS Q+D +RGFS S LDMR Sbjct: 65 LKDFHNRITFIQSNFSEVLEKISHKEELRGILADIGVSSFQLDNNERGFSVN-SDFLDMR 123 Query: 137 MS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M+ S ISA +++N + LT I GE A IA I R P ++ ++L +I Sbjct: 124 MNQNSKISAYEIINTYTKEQLTSIFKDYGELHDAHFIAEKICLERSKNPIKSAKELYQII 183 Query: 196 QKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 K +N+R I AT +FQA+RI VN E++ L L E +L ++SFHSLE Sbjct: 184 GKG---KQNHRKISKATLAFQAIRIEVNQELKVLKDFLGHLENLKPKNCILTIISFHSLE 240 Query: 255 DRLVKKFFASRSGKVMAVRHMIPS---NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 DR+VK FF S + ++ N H ++ Q ITKK + ++E++ N RS AK+ Sbjct: 241 DRIVKNFFKKWSKNCICDEKIMRCECGNNH-SLGQIITKKAISASKEELLKNSRSSCAKM 299 Query: 312 RA 313 RA Sbjct: 300 RA 301 >gi|225011606|ref|ZP_03702044.1| S-adenosyl-methyltransferase MraW [Flavobacteria bacterium MS024-2A] gi|225004109|gb|EEG42081.1| S-adenosyl-methyltransferase MraW [Flavobacteria bacterium MS024-2A] Length = 299 Score = 156 bits (394), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 111/301 (36%), Positives = 161/301 (53%), Gaps = 19/301 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQE 76 H PVLL+ + L+ P + +DATFG GG+SR ++G ++ D+D A++ E Sbjct: 5 HNPVLLQASLEGLHIRPNGIYVDATFGGGGHSRVILDRLGKEGRLLGFDQDVDALANNIE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVP----DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 R F A FS L Y+ DK VDG++ D GVSS Q D +RGFS + Sbjct: 65 DSR-----FDFVAANFSHLTQYLKYHKIDK-VDGILADFGVSSHQFDTQERGFSIRTDAR 118 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ S + A V+N + L + GE K + I+ IV+ R+ TT DL Sbjct: 119 LDMRMNQSQDLDAHKVINTYSEDKLRMLFFAYGELKNSKTISRTIVEAREECEIITTMDL 178 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 L++ V N+I + FQALRI VN+E+E L L A + L GG L+ +S+H Sbjct: 179 IELVKPLVPKRIENKI--LAQLFQALRIEVNDELEALKSFLIQANEVLVQGGRLVCISYH 236 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDRLVK++F + S + + P + I K+++P+ ++V N R+RSAKL Sbjct: 237 SLEDRLVKRYFQTGSFDGELEKDFYGNPIKP--LKKIG-KLIIPSSDEVKENGRARSAKL 293 Query: 312 R 312 R Sbjct: 294 R 294 >gi|78187960|ref|YP_376003.1| methyltransferase [Chlorobium luteolum DSM 273] gi|123582409|sp|Q3B121|RSMH_PELLD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|78167862|gb|ABB24960.1| methyltransferase [Chlorobium luteolum DSM 273] Length = 327 Score = 155 bits (393), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 107/321 (33%), Positives = 173/321 (53%), Gaps = 29/321 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--------GSNVIALDRDPFAV 71 H PVLL + + L PG + +D T G GG+S + + GS ++ +D+D A+ Sbjct: 9 HDPVLLHECVDALVRGPG-LYVDGTLGGGGHSMAILRALESGGWLEGSLLVGIDQDDEAL 67 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD--------GVVFDLGVSSMQIDCGDR 123 + Y + + F + + V ++ DLGVSS QID +R Sbjct: 68 HEAGSRLAAYPGRAVAVKGNFQDIARLASREAVQKGLEPRARAILLDLGVSSRQIDRAER 127 Query: 124 GFSFQKSGPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR-Q 181 GFS+ ++GPLDMRM S + +A+D++N A+ ++L I GEE ++ IA A++ R + Sbjct: 128 GFSYMRTGPLDMRMDSSASTTAADILNDADERELAAIFFRYGEEPRSRAIARAVIAARMK 187 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 P +T+DL+ +++ V+ + I +R FQALRI VN E++ L + L L Sbjct: 188 HGPLSSTEDLADIVRSVVH-GRQPSIRSLSRVFQALRIAVNRELDVLQRVLEDGVSVLDE 246 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSG-----KVMAVRHMIPSNAHPAVFQSITKKVVVPT 296 GG + V+S+HSLEDR+VK++FA++S K + +R + +T+K VV + Sbjct: 247 GGRIAVISYHSLEDRMVKQYFAAQSKCDWGPKGVGLREPLSRG----TLVPVTRKAVVAS 302 Query: 297 QEDVAFNRRSRSAKLRAGMRT 317 +++V N RSRSAKLR +T Sbjct: 303 EDEVRVNPRSRSAKLRVAEKT 323 >gi|38047597|gb|AAR09701.1| similar to Drosophila melanogaster CG14683 [Drosophila yakuba] Length = 251 Score = 155 bits (393), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 95/253 (37%), Positives = 143/253 (56%), Gaps = 21/253 (8%) Query: 37 GKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMR--DYKEQFSLFQATF 92 G D TFGAGG++R + + V ALDRDP A ++ ++K + F Sbjct: 1 GGTYFDMTFGAGGHTRRLLEKCPEAKVYALDRDPLAHQLARDMSESEEFKGRLIPLLGKF 60 Query: 93 SQLQDYVPDKG-----VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS---CSGISA 144 S L + G VDG++FD G SSMQ D RGFS + GPLDMRM G++A Sbjct: 61 SDLPKLFKEHGLAKNSVDGMLFDFGCSSMQFDEAVRGFSISRDGPLDMRMDGGHSGGVTA 120 Query: 145 SDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA-PFQTTQDLSSLIQKTV-YFS 202 +DV+ DL +IL + GEEK A +IA ++ R + +TT+ L+ +I+ + S Sbjct: 121 ADVLANVEEGDLVKILRMYGEEKAAKKIARGLIDARNALFKIETTKQLADIIENIMDGGS 180 Query: 203 KNNRI----HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258 + +++ H AT++FQA+RIFVNNE+ E+ G+ A + L+ G L+ ++FHSLED +V Sbjct: 181 RKDKLRRHAHSATKTFQAIRIFVNNELNEINYGMVLANEILRVDGRLVTITFHSLEDTIV 240 Query: 259 KKFFASRSGKVMA 271 K+ +G V+A Sbjct: 241 KRHI---NGNVLA 250 >gi|315223498|ref|ZP_07865354.1| S-adenosyl-methyltransferase MraW [Capnocytophaga ochracea F0287] gi|314946533|gb|EFS98525.1| S-adenosyl-methyltransferase MraW [Capnocytophaga ochracea F0287] Length = 304 Score = 155 bits (393), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 112/304 (36%), Positives = 159/304 (52%), Gaps = 17/304 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76 H PVLL + I LN +D TFG GG+SR K +G N + A D+D A++ Sbjct: 8 HTPVLLTQSIEGLNIKDNGTYVDVTFGGGGHSREILKHLGKNGRLYAFDQDADALN---N 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 T+ D E+F+L Q F L+ Y+ GV DGV+ D GVSS Q D RGFS + G L Sbjct: 65 TIDD--ERFTLIQQNFKYLRQYLRFYGVTQVDGVLGDFGVSSHQFDVAQRGFSTRFEGTL 122 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +SA +VVN+ +LT I GE K A IA AI+ R+ P + +L Sbjct: 123 DMRMNQQAPLSAQEVVNEYGEIELTHIFFQYGELKNAKAIARAIISYREQKPIRLGSELQ 182 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++ + K N++ + +QA+RI VN EIE L L +K G + ++S+HS Sbjct: 183 EAVKTLLPKFKENKV--LAQIYQAIRIEVNAEIEALESFLLQLPAVVKPQGRISLISYHS 240 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR VK+F R G++ F+ + ++ P ++A N R+RSAKLR Sbjct: 241 LEDRCVKRFI--RDGQLEGAPEKDWYGNVSVPFKKVG-GLITPDDTEIAQNSRARSAKLR 297 Query: 313 AGMR 316 R Sbjct: 298 IAER 301 >gi|78185678|ref|YP_378112.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. CC9902] gi|123581009|sp|Q3AW00|RSMH_SYNS9 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|78169972|gb|ABB27069.1| methyltransferase [Synechococcus sp. CC9902] Length = 294 Score = 155 bits (393), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 110/305 (36%), Positives = 160/305 (52%), Gaps = 28/305 (9%) Query: 20 HVPVLLEKVIALLNPAP--GKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQ 75 HVPVL + V+A P V++DAT G GG+S + G +I LD+DP A + Sbjct: 6 HVPVLADAVVAGAEHLPHHNGVLIDATLGGGGHSALLLERFPGLRLIGLDQDPTARAAAA 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 E + + ++ + F+ Y P V V+ DLGVSS Q+D +RGFSF+ GPLDM Sbjct: 66 ERLAAFADRVEILATNFAS---YTPPAPVLMVLADLGVSSPQLDVAERGFSFRLDGPLDM 122 Query: 136 RMS--CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI-VKRRQSAPFQTTQDLS 192 RM+ G +A++++++ L ++ GEE+ + RIA I P++ T L+ Sbjct: 123 RMNPGSDGETAAELIDRLEENALADLIYGYGEERLSRRIARRIKADLAAQGPYEGTAALA 182 Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ RIHPATR+FQALRI VN+E+ L + L+ A L+ GG++ V+SFH Sbjct: 183 YAVAGCYPPKARRGRIHPATRTFQALRIAVNDELAVLDRLLQQAPDWLETGGVMGVISFH 242 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR VK F + IT+K V T ++ N RSRSAK Sbjct: 243 SLEDRRVKTAFLQDE-----------------RLERITRKPTVATDDEQNRNPRSRSAKW 285 Query: 312 RAGMR 316 R R Sbjct: 286 RLARR 290 >gi|218461400|ref|ZP_03501491.1| S-adenosyl-methyltransferase MraW [Rhizobium etli Kim 5] Length = 216 Score = 155 bits (392), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 95/220 (43%), Positives = 126/220 (57%), Gaps = 10/220 (4%) Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEK-----QASRIAHAIVKRRQS 182 QK+GPLDMR S + S + L + K R A+ K+ Sbjct: 1 QKNGPLDMRKSAARHFGSRRCQTRQGRRSHPHLSVFWARKAKRRVSRMRSRSAVPKK--- 57 Query: 183 APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 PF+TT+DL+ LI+ ++IHPATR FQALRIFVN+E+ ELAQ L +AE+ALK G Sbjct: 58 -PFETTRDLAGLIELVTPRKMKDKIHPATRVFQALRIFVNDELGELAQALFAAERALKPG 116 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G L+VV+FHSLEDR+VKKFF+ R+GK RH+ ++ A F I K +V ++ + Sbjct: 117 GRLVVVTFHSLEDRIVKKFFSDRAGKATGSRHLPAAHERAATFTVIGKPMVSASEAEAEV 176 Query: 303 NRRSRSAKLRAGMRT-VERSIEDDSFVHLPRLPTLSQFRG 341 N R+RSAKLRAG+RT D S P L TL + G Sbjct: 177 NPRARSAKLRAGLRTDAATEPADMSLFGFPNLATLGKLGG 216 >gi|76798783|ref|ZP_00780998.1| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae 18RS21] gi|77405004|ref|ZP_00782105.1| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae H36B] gi|77410569|ref|ZP_00786929.1| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae CJB111] gi|22533299|gb|AAM99192.1|AE014204_10 conserved hypothetical protein TIGR00006 [Streptococcus agalactiae 2603V/R] gi|76585867|gb|EAO62410.1| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae 18RS21] gi|77163284|gb|EAO74235.1| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae CJB111] gi|77176443|gb|EAO79211.1| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae H36B] Length = 298 Score = 155 bits (392), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 100/297 (33%), Positives = 163/297 (54%), Gaps = 12/297 (4%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQETMRDYKE--QF 85 +L+ P + +DAT G G+S ++G + + A D+D A+ ++ Y + Q Sbjct: 1 MLDIKPDGIYVDATLGGAGHSEYLLSQLGPDGHLYAFDQDQKAIDNAHIRLKKYVDTGQV 60 Query: 86 SLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-G 141 + + F L + GV +G+ +DLGVSS Q+D +RGFS+++ PLDMRM+ Sbjct: 61 TFIKDNFRNLSSNLKALGVSEINGICYDLGVSSPQLDERERGFSYKQDAPLDMRMNREQS 120 Query: 142 ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYF 201 ++A DVVN + DL RI GE+K + +IA I + R TT +L+ +I+ + Sbjct: 121 LTAYDVVNTYSYHDLVRIFFKYGEDKFSKQIARKIEQVRAEKTISTTTELAEIIKSSKSA 180 Query: 202 SK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKK 260 + + HPA + FQA+RI VN+E+ + ++ A L G + V++FHSLEDRL K+ Sbjct: 181 KELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDLLAVDGRISVITFHSLEDRLTKQ 240 Query: 261 FFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 F S +V IP + P + + + +K ++P+QE++ N R+ SAKLR R Sbjct: 241 LFKEASTVEVPKGLPFIPDDLQPKM-ELVNRKPILPSQEELEANNRAHSAKLRVARR 296 >gi|332292526|ref|YP_004431135.1| S-adenosyl-methyltransferase MraW [Krokinobacter diaphorus 4H-3-7-5] gi|332170612|gb|AEE19867.1| S-adenosyl-methyltransferase MraW [Krokinobacter diaphorus 4H-3-7-5] Length = 301 Score = 155 bits (391), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 105/303 (34%), Positives = 162/303 (53%), Gaps = 23/303 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMG--SNVIALDRDPFAVSCGQE 76 H PVLL++ + LN P V +D TFG GG+SR ++G + D+D V + Sbjct: 7 HNPVLLKETVDGLNIKPDGVYVDVTFGGGGHSREILSRLGPEGKLYGFDQD---VDAQEN 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + D E+F+L F ++ ++ GV DG++ D GVSS Q D +RGFS + L Sbjct: 64 IIED--ERFTLIPENFRYIKRFMRFHGVKKVDGILGDFGVSSHQFDVAERGFSTRFESDL 121 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +SA +V+N +DL ++ GE + A ++A IV+ R S +T++ L Sbjct: 122 DMRMNQKDTLSAYNVINDYEEEDLRQVFWQYGELRNAPKLASTIVQERNSQFIKTSEHLK 181 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++ + K+ + +QA+RI VN EIE L + L E+ L GG + ++S+HS Sbjct: 182 KVL--APFLPKHREHKILAQIYQAIRIEVNQEIEVLKEFLMQTEQLLDTGGRISLISYHS 239 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV---VVPTQEDVAFNRRSRSA 309 LEDRLVK++ RSG P F+ KKV ++P +++ N R+RSA Sbjct: 240 LEDRLVKRYI--RSGMFEGE----PEKDMYGNFEVPFKKVGKLIIPDSKEIKLNNRARSA 293 Query: 310 KLR 312 KLR Sbjct: 294 KLR 296 >gi|86151694|ref|ZP_01069908.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp. jejuni 260.94] gi|315124195|ref|YP_004066199.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85841323|gb|EAQ58571.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp. jejuni 260.94] gi|315017917|gb|ADT66010.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 310 Score = 155 bits (391), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 106/302 (35%), Positives = 164/302 (54%), Gaps = 13/302 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 H+PVLL +V + LD T G GG+S + K ++ IA D+D A+ ++ Sbjct: 5 HIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKNHPDLKFIACDQDQQALEFSKKR 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 ++D+ + + Q+ FS++ + + K + G++ D+GVSS Q+D +RGFS S LDMR Sbjct: 65 LKDFHNRITFVQSNFSEVLEKISHKEELRGILADIGVSSFQLDNNERGFSVN-SDFLDMR 123 Query: 137 MS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M+ S ISA +++N + LT I GE A IA I R P ++ ++L +I Sbjct: 124 MNQNSKISAYEIINTYTKEQLTSIFKDYGELHDAHFIAEKICLERSKNPIKSAKELYQII 183 Query: 196 QKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 K +N+R I AT +FQA+RI VN E++ L L E +L ++SFHSLE Sbjct: 184 GKG---KQNHRKISKATLAFQAIRIEVNQELKVLKDFLGHLENLKPKNCILAIISFHSLE 240 Query: 255 DRLVKKFFASRSGKVMAVRHMIPS---NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 DR+VK FF S + ++ N H ++ Q ITKK + ++E++ N RS AK+ Sbjct: 241 DRIVKNFFKKWSKNCICDEKIMRCECGNNH-SLGQIITKKAISASKEELLKNSRSSCAKM 299 Query: 312 RA 313 RA Sbjct: 300 RA 301 >gi|284931424|gb|ADC31362.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Mycoplasma gallisepticum str. F] Length = 313 Score = 155 bits (391), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 110/308 (35%), Positives = 167/308 (54%), Gaps = 27/308 (8%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H PVLL++VI L + LD T G GG+S + K+ + +I D+D A++ ++ Sbjct: 9 HYPVLLKEVIENLITIKDGIYLDLTIGFGGHSYNIIKILDQKARLIGFDQDLQAIAHCKQ 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVP----DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 ++ SL F L+ ++ DK +DG + DLGVSS Q+D DRGFS+ G Sbjct: 69 LFSEF-NNVSLINDNFVNLKKHLQLMQIDK-IDGCLIDLGVSSYQLDRADRGFSYHSLGR 126 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + + A+ ++ + V +L +I+ GE K R+ A+ K + T + + Sbjct: 127 LDMRMDQNKEVDATKLIQNSTVSELVKIMKNYGEIKDPYRVVVALKKAFEKKELNTLE-V 185 Query: 192 SSLIQKTV-----YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 LI+K V Y +K HPA R FQALRI VNNE+E L + L L GG + Sbjct: 186 VELIKKHVNKAELYANK----HPARRYFQALRIAVNNELEVLEKLLSYLPSYLNKGGKIA 241 Query: 247 VVSFHSLEDRLVKKFF---ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 +++FHSLE+++VKK F AS S ++ ++ +N + + K + PTQ ++ N Sbjct: 242 IITFHSLEEKIVKKVFRHLASTS----SLNNLPINNELLKKYHNHFNKGLSPTQSELETN 297 Query: 304 RRSRSAKL 311 RRSRSAKL Sbjct: 298 RRSRSAKL 305 >gi|330836624|ref|YP_004411265.1| Ribosomal RNA small subunit methyltransferase H [Spirochaeta coccoides DSM 17374] gi|329748527|gb|AEC01883.1| Ribosomal RNA small subunit methyltransferase H [Spirochaeta coccoides DSM 17374] Length = 314 Score = 155 bits (391), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 108/300 (36%), Positives = 159/300 (53%), Gaps = 9/300 (3%) Query: 20 HVPVLLEKVI-ALLNP--APGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCG 74 H PVL E+V+ AL+ P P +++D T G GG++ + N VI LDRD Sbjct: 6 HQPVLAEEVLDALVIPLDVPA-LMIDCTTGEGGHTGMMLERHPNLTVIGLDRDEAIQKKA 64 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + + Y +F F D ++FDLG+S RGFSFQK PLD Sbjct: 65 RTRLESYGGRFIPTLTWFDDFLTTYEGTAPDAILFDLGISMFHYVESGRGFSFQKPEPLD 124 Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MR+ IS +D+VN + L I+ GEE+ + +IA AI + R + L+ Sbjct: 125 MRLDAQDAISVADIVNTYEERRLADIIYAYGEERHSRKIAAAICRARAEERLTYSDRLAE 184 Query: 194 LIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 LI+ V + + RIHPAT++FQALRI VN+E++ + + +A K ++ GG + V++FHS Sbjct: 185 LIKSAVPPAYRFGRIHPATKTFQALRIEVNHELDRIKPAIEAALKIIRPGGRIAVITFHS 244 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR VK F + R ++ P F ITKK +VP++++ N +RSAKLR Sbjct: 245 LEDRKVKWIFKEAAWDTEETREKKTASTFPP-FAIITKKPIVPSEDECRRNPAARSAKLR 303 >gi|332663143|ref|YP_004445931.1| ribosomal RNA small subunit methyltransferase H [Haliscomenobacter hydrossis DSM 1100] gi|332331957|gb|AEE49058.1| Ribosomal RNA small subunit methyltransferase H [Haliscomenobacter hydrossis DSM 1100] Length = 298 Score = 155 bits (391), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 103/302 (34%), Positives = 164/302 (54%), Gaps = 13/302 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H PVL + I LN G +DATFG GG++R + + +I D+D + Sbjct: 4 HNPVLASEAIEALNIQAGGTYVDATFGGGGHARLILQALDENARLIGFDQDE---DAQRN 60 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK-GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + D + F F + + D VDG++ DLGVSS Q++ +RGFSF+ LDM Sbjct: 61 ALDDPRFTFVPHNFRFLRRFLRLHDAVEVDGILADLGVSSHQLNEAERGFSFRFDTQLDM 120 Query: 136 RMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM+ G SA+DV+ +L + G LGE + + +A AIV+ RQ P ++ DL ++ Sbjct: 121 RMNQQGERSAADVLATYTEAELQNMFGTLGEVRNSRTLAQAIVRERQVRPMRSISDLLAV 180 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 + V +N + + FQALR+ VN+E+ L L + + LK GG L+++++HS+E Sbjct: 181 LDPLVRGQRNRYL---AQVFQALRMEVNDEVGALQDFLEQSLQVLKPGGRLVIIAYHSIE 237 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 DR+VK F ++GKV F+ IT+K ++P++ ++ N RSRSAK+R Sbjct: 238 DRMVKNFI--KTGKVDGEMEQDFYGNITRPFEVITRKAMLPSEIEIKANPRSRSAKMRVA 295 Query: 315 MR 316 ++ Sbjct: 296 VK 297 >gi|209554330|ref|YP_002284822.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|263504480|sp|B5ZBN2|RSMH_UREU1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|209541831|gb|ACI60060.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 10 str. ATCC 33699] Length = 308 Score = 155 bits (391), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 108/309 (34%), Positives = 159/309 (51%), Gaps = 18/309 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI---ALDRDPFAVSCGQE 76 H VLL + I LL+ P + +D TFG GG+S+ K S +D+D A+ Sbjct: 6 HTTVLLNETIELLHVKPDGIYVDCTFGRGGHSQLILKKLSKKGKLICIDQDQQAIDFANN 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +D + + F L+ + D VDG VFDLG+SS Q+D +RGFS+ K L Sbjct: 66 LFKD-NPNVIVIKTNFKNLKSVLYDHQIFHVDGFVFDLGLSSPQLDDPERGFSYHKDALL 124 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM ++A +VN + L I GE K A IA+ IVK R + TT +L Sbjct: 125 DMRMDQEQKLNAHYIVNHYSFAKLVNIFTKYGEIKYAKTIANGIVKERSTKAINTTLELV 184 Query: 193 SLIQ----KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +I+ K + F K HPA FQA+RI VN+E+ L + A L G++ ++ Sbjct: 185 EIIKNYSPKKILFEKK---HPARLFFQAIRIEVNDELNILKKAFNDAISMLNPLGVVAII 241 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLED++VKK F + + + IP N + + + +K++ TQE + N RSRS Sbjct: 242 SFHSLEDKIVKKVFNNYAKNKLPKE--IPLNNYVNQYSLLNQKIMPSTQE-LNDNNRSRS 298 Query: 309 AKLRAGMRT 317 + LR ++ Sbjct: 299 SILRGLVKN 307 >gi|157414980|ref|YP_001482236.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp. jejuni 81116] gi|263445755|sp|A8FLC2|RSMH_CAMJ8 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|157385944|gb|ABV52259.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp. jejuni 81116] gi|307747617|gb|ADN90887.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Campylobacter jejuni subsp. jejuni M1] gi|315931891|gb|EFV10846.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp. jejuni 327] Length = 310 Score = 155 bits (391), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 106/302 (35%), Positives = 164/302 (54%), Gaps = 13/302 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 H+PVLL +V + LD T G GG+S + K ++ IA D+D A+ ++ Sbjct: 5 HIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKNHPDLKFIACDQDQQALEFSKKR 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 ++D+ + + Q+ FS++ + + K + G++ D+GVSS Q+D +RGFS S LDMR Sbjct: 65 LKDFHNRITFIQSNFSEVLEKISYKEELRGILADIGVSSFQLDNNERGFSVN-SDFLDMR 123 Query: 137 MS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M+ S ISA +++N + LT I GE A IA I R P ++ ++L +I Sbjct: 124 MNQNSKISAYEIINTYTKEQLTSIFKDYGELHDAHFIAEKICLERSKNPIKSAKELYQII 183 Query: 196 QKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 K +N+R I AT +FQA+RI VN E++ L L E +L ++SFHSLE Sbjct: 184 GKG---KQNHRKISKATLAFQAIRIEVNQELKVLKDFLGHLENLKPKNCILAIISFHSLE 240 Query: 255 DRLVKKFFASRSGKVMAVRHMIPS---NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 DR+VK FF S + ++ N H ++ Q ITKK + ++E++ N RS AK+ Sbjct: 241 DRIVKNFFKKWSKNCICDEKIMRCECGNNH-SLGQIITKKAISASKEELLKNSRSSCAKM 299 Query: 312 RA 313 RA Sbjct: 300 RA 301 >gi|167972765|ref|ZP_02555042.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|167973620|ref|ZP_02555897.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|167975916|ref|ZP_02558193.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|167987809|ref|ZP_02569480.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|168363028|ref|ZP_02696202.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|195867888|ref|ZP_03079887.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198273780|ref|ZP_03206314.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|225550865|ref|ZP_03771814.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225551533|ref|ZP_03772479.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|171903084|gb|EDT49373.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|184209218|gb|EDU06261.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188019063|gb|EDU57103.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188998230|gb|EDU67327.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195659727|gb|EDX53107.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195660465|gb|EDX53723.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198249535|gb|EDY74317.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|225379348|gb|EEH01713.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|225380019|gb|EEH02381.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 308 Score = 155 bits (391), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 108/309 (34%), Positives = 159/309 (51%), Gaps = 18/309 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI---ALDRDPFAVSCGQE 76 H VLL + I LL+ P + +D TFG GG+S+ K S +D+D A+ Sbjct: 6 HTTVLLNETIELLHVKPDGIYVDCTFGRGGHSQLILKKLSKKGKLICIDQDQQAIDFANN 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +D + + F L+ + D VDG VFDLG+SS Q+D +RGFS+ K L Sbjct: 66 LFKD-NPNVIVIKTNFKNLKSVLYDHQIFHVDGFVFDLGLSSPQLDDPERGFSYHKDALL 124 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM ++A +VN + L I GE K A IA+ IVK R + TT +L Sbjct: 125 DMRMDQEQKLNAHYIVNHYSFAKLVNIFTKYGEIKYAKTIANGIVKERSTKAINTTLELV 184 Query: 193 SLIQ----KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +I+ K + F K HPA FQA+RI VN+E+ L + A L G++ ++ Sbjct: 185 EIIKNYSPKKILFEKK---HPARLFFQAIRIEVNDELNILEKAFNDAISMLNPLGVVAII 241 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLED++VKK F + + + IP N + + + +K++ TQE + N RSRS Sbjct: 242 SFHSLEDKIVKKVFNNYAKNKLPKE--IPLNNYVNQYSLLNQKIMPSTQE-LNDNNRSRS 298 Query: 309 AKLRAGMRT 317 + LR ++ Sbjct: 299 SILRGLVKN 307 >gi|305433210|ref|ZP_07402366.1| S-adenosyl-methyltransferase MraW [Campylobacter coli JV20] gi|304443911|gb|EFM36568.1| S-adenosyl-methyltransferase MraW [Campylobacter coli JV20] Length = 311 Score = 155 bits (391), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 106/304 (34%), Positives = 161/304 (52%), Gaps = 17/304 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 H+PVLL +V LD T G GG+S S K N+ IA D+D A+ ++ Sbjct: 5 HIPVLLNEVNQAFEKLNSGYFLDCTLGFGGHSESLLKDHPNLKLIACDQDKEALEFSKKR 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVP-DKGVD--GVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + D+K++ + FSQ+ D + DK D G++ D+GVSS Q+D RGF+ S LD Sbjct: 65 LHDFKDRTEFVLSNFSQILDQISHDKLNDLKGILADIGVSSYQLDNNKRGFNLH-SDFLD 123 Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM+ ISA +++N + L+ I GE IA I + RQ ++ ++L Sbjct: 124 MRMNQDAKISAFEIINNYTQEQLSDIFKKYGELNDGYFIAQKICQERQKNKIKSAKELYE 183 Query: 194 LIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I KT +N+R + AT FQA+RI VN E+E L L EK +L ++ FHS Sbjct: 184 IIGKT---KQNHRSVSKATLVFQAIRIEVNQELEVLKNFLEKLEKIKLKNCILAIICFHS 240 Query: 253 LEDRLVKKFFASRSGKVM----AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 LEDR+VK +F + + A R +N ++ + I+KK + P++E++ N RS Sbjct: 241 LEDRIVKNYFKKWAKNCICDERAFRCECGNN--HSLGEIISKKAITPSKEEIMINSRSSC 298 Query: 309 AKLR 312 AK+R Sbjct: 299 AKMR 302 >gi|225375865|ref|ZP_03753086.1| hypothetical protein ROSEINA2194_01497 [Roseburia inulinivorans DSM 16841] gi|225212300|gb|EEG94654.1| hypothetical protein ROSEINA2194_01497 [Roseburia inulinivorans DSM 16841] Length = 355 Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 106/313 (33%), Positives = 164/313 (52%), Gaps = 28/313 (8%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF--CKMG-SNVIALDRDPFAVSCG 74 G H+ +++ ++I L PG+ DAT G G++++ C G ++ A D DP + Sbjct: 55 GMHISIMVREIIDFLQIKPGQTGFDATLGYSGHTKAMLECLKGQGHMYATDVDPIESAKT 114 Query: 75 QETMRDY---KEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 ++ + D ++ ++ F + + + G D V+ DLGVSSMQID DRGFSF+ Sbjct: 115 KKRLADAGFGEDILTIRLQNFCTIDEIAKEAGGFDFVLADLGVSSMQIDNPDRGFSFKVD 174 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV-KRRQSAPFQTT 188 GPLD+R++ GISA++ + Q + +L +L +E A +A AIV +R+ P TT Sbjct: 175 GPLDLRLNPEKGISAAERLAQIDEDELAGMLWENSDEPYAEELARAIVTERKHGKPIDTT 234 Query: 189 QDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 L +I++T+ F K+ R+FQALRI VNNE E L + + ALK GG Sbjct: 235 TRLREVIEETLSFLPEKEKKDTVKKTCQRTFQALRIDVNNEFEVLYEFMEKLPGALKPGG 294 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 +++FHS ED+LVKK + V+ I VV P+ E+ A N Sbjct: 295 RAAILTFHSGEDKLVKK--------------ALKQGYKEGVYSEIANDVVRPSAEECAQN 340 Query: 304 RRSRSAKLRAGMR 316 R+RS K+R +R Sbjct: 341 GRARSTKMRWAVR 353 >gi|294155677|ref|YP_003560061.1| S-adenosyl-methyltransferase [Mycoplasma crocodyli MP145] gi|291600063|gb|ADE19559.1| S-adenosyl-methyltransferase [Mycoplasma crocodyli MP145] Length = 300 Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 107/300 (35%), Positives = 160/300 (53%), Gaps = 17/300 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSNV-IALDRDPFAVSCGQET 77 H VLL + I LN P + +D T G GG+S K+ S + IA D+D +A+ Q+ Sbjct: 5 HYSVLLNETIDSLNIKPDGIYIDLTLGMGGHSTKILEKLKSGLLIAFDKDKYALEISQKR 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + ++F L + +S+L+ + VDG++ DLG+SS Q+D +RGFS+ K LD Sbjct: 65 LSQISDKFILVNSDYSKLKSELFKLNINKVDGIIADLGISSPQVDDANRGFSYNKDARLD 124 Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM + I A +VN + + L I + K A ++A I K R P T +L Sbjct: 125 MRMDTNQEIDAHYIVNNYSCEQLVDIFLKYADVKLAKQVAKVIEKNR---PINNTLELVE 181 Query: 194 LIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I K+ Y + R +PA FQALRI VNNE++ L L A + LK L +++FHS Sbjct: 182 II-KSAYPAAILRAKNPAKAVFQALRIEVNNELDSLKTMLDDAIELLKENSSLSIITFHS 240 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 +EDRLVK F M + +P N + + K + P+ +++ N+RSRSAKLR Sbjct: 241 IEDRLVKHKFTELCSSKMPAK--MPINE----IKYFSTKQIKPSAKELLENKRSRSAKLR 294 >gi|218562332|ref|YP_002344111.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|20139252|sp|Q9PPL4|RSMH_CAMJE RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|112360038|emb|CAL34830.1| S-adenosyl-methyltransferase [Campylobacter jejuni subsp. jejuni NCTC 11168] Length = 312 Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 105/302 (34%), Positives = 165/302 (54%), Gaps = 13/302 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 H+PVLL +V + LD T G GG+S + K ++ IA D+D A+ ++ Sbjct: 7 HIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKNHPDLKFIACDQDQQALKFSKKR 66 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 ++D++ + + Q+ FS++ + + K + G++ D+GVSS Q+D +RGFS S LDMR Sbjct: 67 LKDFRNRITFMQSNFSEVLEKISHKEELRGILADIGVSSFQLDNNERGFSVN-SDFLDMR 125 Query: 137 MS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M+ S ISA +++N + LT I GE A IA I R ++ ++L +I Sbjct: 126 MNQNSKISAYEIINTYTKEQLTSIFKDYGELHDAHFIAEKICLERSKNLIKSAKELYQII 185 Query: 196 QKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 K +N+R I AT +FQA+RI VN E++ L L E +L ++SFHSLE Sbjct: 186 GKG---KQNHRKISKATLAFQAIRIEVNQELKVLKDFLEHLENLKPKNCILAIISFHSLE 242 Query: 255 DRLVKKFFASRSGKVMAVRHMIPS---NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 DR+VK+FF S + ++ N H ++ Q ITKK + ++E++ N RS AK+ Sbjct: 243 DRIVKQFFKKWSKNCICNEKIMRCECGNNH-SLGQIITKKAISASKEELLKNSRSSCAKM 301 Query: 312 RA 313 RA Sbjct: 302 RA 303 >gi|315637346|ref|ZP_07892564.1| S-adenosyl-methyltransferase MraW [Arcobacter butzleri JV22] gi|315478389|gb|EFU69104.1| S-adenosyl-methyltransferase MraW [Arcobacter butzleri JV22] Length = 300 Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 100/300 (33%), Positives = 164/300 (54%), Gaps = 14/300 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 H+PVL +V+ I+D T G G+S N+ I D+D A++ ++ Sbjct: 5 HIPVLYNEVLETFKDTNEGYIIDCTTGFAGHSSGLLNQNQNIKLICNDQDDEALAFSKKR 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 + ++ + + F + + D + GV+ D+GVSS+Q+D +RGF F+ S LDMRM Sbjct: 65 VEKFENRVIFNKGNFEHVIETFKDYEIRGVLADIGVSSLQLDKLERGFGFE-SLTLDMRM 123 Query: 138 SCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 + + + A+ VVN + +L RI GE ++ ++A IV R PF ++++L+ + Sbjct: 124 NQNQSLDAATVVNTYSQTELERIFKDYGEVREYKKVASLIVNNR---PFNSSKELADFLS 180 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 K + ++HPAT FQA+RI VN+E+ L + S EKA ++ ++SFHSLEDR Sbjct: 181 KKM---SKGKLHPATLPFQAIRIEVNDELGVLERLFDSLEKAKLKDCIVAIISFHSLEDR 237 Query: 257 LVKKFFASRSGKVMAVRHMI---PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 +VK +F S + ++ N H A+ + ITKK ++PT ++ N RSRS+KLR Sbjct: 238 IVKNYFKKWSKSCICPDNVFRCECGNNH-ALGKIITKKPIIPTALEIKQNPRSRSSKLRV 296 >gi|313681992|ref|YP_004059730.1| s-adenosyl-methyltransferase mraw [Sulfuricurvum kujiense DSM 16994] gi|313154852|gb|ADR33530.1| S-adenosyl-methyltransferase MraW [Sulfuricurvum kujiense DSM 16994] Length = 307 Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 106/306 (34%), Positives = 174/306 (56%), Gaps = 24/306 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQET 77 H+PVL +VI +P +++D T G GG+S + ++I +D+DP A++ + Sbjct: 6 HIPVLYREVIEAFSPCKEGIVIDCTMGYGGHSSLLLENNPALSLIGIDQDPTAIAFSSKR 65 Query: 78 MRDYKEQFSLFQATFSQL-QDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + + + + + FS++ +D + +KG + G++ D+GVSS+Q+D +RGFS++ S LD Sbjct: 66 LEPFGNRVEIRRGRFSEVARDAIEEKGEKICGILADIGVSSLQLDQRERGFSYE-SDTLD 124 Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM+ +SA +VVN + L IL GE A ++A IV+RR PF + ++LS+ Sbjct: 125 MRMNPDAPLSAGEVVNDYSQGALETILREYGEVTNARKVAETIVQRR---PFSSAKELSN 181 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 I K +IHP+T QA+RI VN+E+ EL + L + E + + +++FHSL Sbjct: 182 AIFH--LMPKGKKIHPSTLVMQAIRIEVNDELGELTRLLDAIEASKLKHLRVAIITFHSL 239 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNA-------HPAVFQSITKKVVVPTQEDVAFNRRS 306 EDR+VK F ++ GK + P +A A+ + ITKK + +++ N RS Sbjct: 240 EDRIVKNRF-TKWGK----NCICPDDAMRCTCGNKNAIGKIITKKPLSAQDDELRANSRS 294 Query: 307 RSAKLR 312 RSAKLR Sbjct: 295 RSAKLR 300 >gi|33860731|ref|NP_892292.1| hypothetical protein PMM0171 [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|42559450|sp|Q7V3B1|RSMH_PROMP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|33633673|emb|CAE18630.1| conserved hypothetical protein [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 300 Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 106/277 (38%), Positives = 154/277 (55%), Gaps = 25/277 (9%) Query: 41 LDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDY 98 +DAT G GG+S K + +I LD DPFA + ++K + + + F+ ++ Sbjct: 39 IDATLGGGGHSYQLLKKYPDLKIIGLDHDPFARQSAFIKLEEFKSRIEICPSNFA---NF 95 Query: 99 VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLT 157 P + V V+ DLGV+S QID RGFSFQK GPLDMRM+ ++A D++ N KDL Sbjct: 96 EPKEKVSFVIADLGVNSNQIDNPQRGFSFQKDGPLDMRMNPLLEMNAEDLIETLNEKDLA 155 Query: 158 RILGILGEEKQASRIAHAIVKRRQS-APFQTTQDLSSLIQKTVYFSKNNR-IHPATRSFQ 215 ++ G+E+ + +I+ I K Q + T+DL+ I + R IHPATR+FQ Sbjct: 156 DLIFKFGDERLSRKISRRIKKDLQEKGKYSGTKDLAYSIAGCFPPKQRYRKIHPATRTFQ 215 Query: 216 ALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM 275 ALRI VN EIE L + L A L GG++ ++SFHS+EDRLVK F Sbjct: 216 ALRIAVNKEIEALERFLELAPNWLLPGGIISIISFHSIEDRLVKNSFKGDER-------- 267 Query: 276 IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 +++TKK + P ++++ N+RSRSAKLR Sbjct: 268 ---------LKNLTKKPITPNEKEIENNKRSRSAKLR 295 >gi|110004576|emb|CAK98913.1| probable s-adenosyl-methyltransferase mraw protein [Spiroplasma citri] Length = 313 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 109/304 (35%), Positives = 164/304 (53%), Gaps = 12/304 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H VLL++ IA LN + +D T G G+S K N + ++D A+ ++ Sbjct: 5 HQTVLLQEAIAGLNILNNGIYVDCTLGRAGHSLEILKHLPNGKLYCFEQDEAAIIASKQI 64 Query: 78 MRDYK-EQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +++ K + + + F L + K V+G+++DLGVSS Q+D +RGFS++ L Sbjct: 65 LQESKYHNYEIIKNNFVNLAAELQVRQVKAVNGILYDLGVSSPQLDDDNRGFSYRYDSLL 124 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ ++A +VN + + L ++ GEE A IA IV R + TT L Sbjct: 125 DMRMNQKQELTAKIIVNTYSQEALAKLFQDYGEEPFAKVIAKNIVIARNTQEIVTTFHLV 184 Query: 193 SLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+K++ K + HPA R FQALRI VN E+ L + L A L G L+V+SF Sbjct: 185 EIIKKSLPQKILKKAK-HPAKRVFQALRIEVNQELFVLQESLLQATTLLAVHGRLVVISF 243 Query: 251 HSLEDRLVKKFFASRSGK-VMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRS 308 HSLEDR+VKK+F S + + +P +H + +Q I KK +VP+ + A N RS S Sbjct: 244 HSLEDRIVKKYFQSLTKDPNYEINQQLPVISHFESNYQIIIKKAIVPSGTEQARNHRSTS 303 Query: 309 AKLR 312 AKLR Sbjct: 304 AKLR 307 >gi|13357947|ref|NP_078221.1| hypothetical protein UU386 [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170762354|ref|YP_001752469.1| S-adenosyl-methyltransferase MraW [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|20139253|sp|Q9PQA4|RSMH_UREPA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263504475|sp|B1AJ25|RSMH_UREP2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|11278383|pir||D82897 conserved hypothetical UU386 [imported] - Ureaplasma urealyticum gi|6899371|gb|AAF30796.1|AE002136_3 conserved hypothetical [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827931|gb|ACA33193.1| S-adenosyl-methyltransferase MraW [Ureaplasma parvum serovar 3 str. ATCC 27815] Length = 308 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 109/308 (35%), Positives = 161/308 (52%), Gaps = 16/308 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI---ALDRDPFAVSCGQE 76 H+ VLL + I LLN P + +D TFG GG+S+ K S LD+D A++ Sbjct: 6 HITVLLNETIELLNIKPDGIYVDCTFGRGGHSQLILKKLSKKGKLICLDQDQEAINFANN 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ + + F L+ + VDG +FDLG+SS Q+D RGFS+ K+ L Sbjct: 66 LFKN-NTNVIVIKTNFKNLKSALSAHKIFYVDGFIFDLGLSSPQLDDPKRGFSYHKNAWL 124 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S ++A +VN + L I GE K IA AIVK R TT +L Sbjct: 125 DMRMDQSQNLNAHYIVNNYSFAKLVSIFKRYGEIKYPKIIADAIVKERSIKEINTTLELV 184 Query: 193 SLIQKTVYFSKNN---RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 +I+K Y K N + HPA FQA+RI VN+E+ L + A L G++ ++S Sbjct: 185 EIIKK--YSPKKNLFEKKHPARLFFQAIRIEVNDELNILEKAFNDAISMLNPLGVVAIIS 242 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLED++VKK F + + + + +P N + + + +K++ TQE + N RSRS+ Sbjct: 243 FHSLEDKIVKKVFNNYAK--IKLPKEVPINNYVNKYSLLNQKIMPSTQE-LNDNNRSRSS 299 Query: 310 KLRAGMRT 317 LR +R Sbjct: 300 ILRGLIRN 307 >gi|258614830|ref|ZP_05712600.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium DO] Length = 234 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 88/213 (41%), Positives = 131/213 (61%), Gaps = 5/213 (2%) Query: 104 VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGI 162 VDG+++DLGVSS Q+D +RGFS+ + PLDMRM S +SA V+N+ + +L +I Sbjct: 13 VDGILYDLGVSSPQLDEAERGFSYHQDAPLDMRMDQSAPLSAYHVINEYSYHELVKIFFR 72 Query: 163 LGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRI-HPATRSFQALRIFV 221 GEEK + +IA I + R++ P QTT +L +I++ + + HPA R FQA+RI V Sbjct: 73 YGEEKFSKQIAREIERVRKTKPIQTTGELVEIIKQVIPAPARRKGGHPAKRIFQAVRIAV 132 Query: 222 NNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSG--KVMAVRHMIPSN 279 N+E+ L A + LK G + V++FHSLEDR+VK F S + +IP Sbjct: 133 NDELGAEEASLEQAIRLLKVNGRISVITFHSLEDRIVKSMFKEYSTVQDLPPGLPVIPDE 192 Query: 280 AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 P + + IT+K ++P++E++ N RSRSAKLR Sbjct: 193 FQPEL-KVITRKPILPSEEELTENNRSRSAKLR 224 >gi|86153556|ref|ZP_01071760.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp. jejuni HB93-13] gi|85843282|gb|EAQ60493.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp. jejuni HB93-13] Length = 310 Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 106/302 (35%), Positives = 164/302 (54%), Gaps = 13/302 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 H+PVLL +V + LD T G GG+S + K ++ IA D+D A+ ++ Sbjct: 5 HIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKNHPDLKFIACDQDQQALEFSKKR 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 ++D+ + + Q+ FS++ + + K + G++ D+GVSS Q+D +RGFS S LDMR Sbjct: 65 LKDFHNRITFVQSNFSEVLEKISHKEELRGILADIGVSSFQLDNNERGFSVN-SDFLDMR 123 Query: 137 MS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M+ S ISA +++N + LT I GE A IA I R P ++ ++L +I Sbjct: 124 MNQNSKISAYEIINTYTKEQLTSIFKDYGELHDAHFIAEKICLERSKNPIKSAKELYQII 183 Query: 196 QKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 K +N+R I AT +FQA+RI VN E++ L L E +L ++SFHSLE Sbjct: 184 GKG---KQNHRKISKATLAFQAIRIEVNQELKVLKDFLGHLENLKPKNCILAIISFHSLE 240 Query: 255 DRLVKKFFASRSGKVMAVRHMIPS---NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 DR+VK FF S + ++ N H ++ Q ITKK + ++E++ N RS AK+ Sbjct: 241 DRIVKIFFKKWSKNCICDEKIMRCECGNNH-SLGQIITKKAISASKEELLKNSRSSCAKM 299 Query: 312 RA 313 RA Sbjct: 300 RA 301 >gi|183508652|ref|ZP_02958151.1| S-adenosyl-methyltransferase MraW [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|182676119|gb|EDT88024.1| S-adenosyl-methyltransferase MraW [Ureaplasma parvum serovar 14 str. ATCC 33697] Length = 308 Score = 153 bits (387), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 109/308 (35%), Positives = 161/308 (52%), Gaps = 16/308 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI---ALDRDPFAVSCGQE 76 H+ VLL + I LLN P + +D TFG GG+S+ K S LD+D A++ Sbjct: 6 HITVLLNETIELLNIKPDGIYVDCTFGRGGHSQLILKKLSKKGKLICLDQDQEAINFANN 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ + + F L+ + VDG +FDLG+SS Q+D RGFS+ K+ L Sbjct: 66 LFKN-NTNVIVIKTNFKNLKSALSAHKIFYVDGFIFDLGLSSPQLDDPKRGFSYHKNAWL 124 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S ++A +VN + L I GE K IA AIVK R TT +L Sbjct: 125 DMRMDQSQNLNAHYIVNNYSFVKLVSIFKRYGEIKYPKIIADAIVKERSIKEINTTLELV 184 Query: 193 SLIQKTVYFSKNN---RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 +I+K Y K N + HPA FQA+RI VN+E+ L + A L G++ ++S Sbjct: 185 EIIKK--YSPKKNLFEKKHPARLFFQAIRIEVNDELNILEKAFNDAISMLNPLGVVAIIS 242 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLED++VKK F + + + + +P N + + + +K++ TQE + N RSRS+ Sbjct: 243 FHSLEDKIVKKVFNNYAK--IKLPKEVPINNYVNKYSLLNQKIMPSTQE-LNDNNRSRSS 299 Query: 310 KLRAGMRT 317 LR +R Sbjct: 300 ILRGLIRN 307 >gi|186701697|ref|ZP_02971391.1| S-adenosyl-methyltransferase MraW [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|186700956|gb|EDU19238.1| S-adenosyl-methyltransferase MraW [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 308 Score = 153 bits (387), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 109/308 (35%), Positives = 161/308 (52%), Gaps = 16/308 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI---ALDRDPFAVSCGQE 76 H+ VLL + I LLN P + +D TFG GG+S+ K S LD+D A++ Sbjct: 6 HITVLLNETIELLNIKPDGIYVDCTFGRGGHSQLILKKLSKKGKLICLDQDQEAINFANN 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ + + F L+ + VDG +FDLG+SS Q+D RGFS+ K+ L Sbjct: 66 LFKN-NTNVIVIKTNFKNLKSALGAHKIFYVDGFIFDLGLSSPQLDDPKRGFSYHKNAWL 124 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S ++A +VN + L I GE K IA AIVK R TT +L Sbjct: 125 DMRMDQSQNLNAHYIVNNYSFAKLVSIFKRYGEIKYPKIIADAIVKERSIKEINTTLELV 184 Query: 193 SLIQKTVYFSKNN---RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 +I+K Y K N + HPA FQA+RI VN+E+ L + A L G++ ++S Sbjct: 185 EIIKK--YSPKKNLFEKKHPARLFFQAIRIEVNDELNILEKAFNDAISMLNPLGVVAIIS 242 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLED++VKK F + + + + +P N + + + +K++ TQE + N RSRS+ Sbjct: 243 FHSLEDKIVKKVFNNYAK--IKLPKEVPINNYVNKYSLLNQKIMPSTQE-LNDNNRSRSS 299 Query: 310 KLRAGMRT 317 LR +R Sbjct: 300 ILRGLIRN 307 >gi|157737563|ref|YP_001490246.1| S-adenosyl-methyltransferase MraW [Arcobacter butzleri RM4018] gi|172045652|sp|A8EUF3|RSMH_ARCB4 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|157699417|gb|ABV67577.1| S-adenosyl-methyltransferase [Arcobacter butzleri RM4018] Length = 300 Score = 153 bits (387), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 100/300 (33%), Positives = 163/300 (54%), Gaps = 14/300 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 H+PVL +V+ I+D T G G+S N+ I D+D A++ ++ Sbjct: 5 HIPVLYNEVLETFKDINEGYIIDCTTGFAGHSSGLLNQNQNIKLICNDQDDEALAFSKKR 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 + ++ + F + + D + GV+ D+GVSS+Q+D +RGF F+ S LDMRM Sbjct: 65 LEKFENGVIFNKGNFEHVIETFKDYEIRGVLADIGVSSLQLDKLERGFGFE-SLTLDMRM 123 Query: 138 SCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 + + + A+ VVN + +L RI GE ++ ++A IV R PF ++++L+ + Sbjct: 124 NQNQSLDAATVVNTYSQTELERIFKDYGEVREYKKVASLIVNNR---PFNSSKELADFLS 180 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 K + ++HPAT FQA+RI VN+E+ L + S EKA ++ ++SFHSLEDR Sbjct: 181 KKM---SKGKLHPATLPFQAIRIEVNDELGVLERLFDSLEKAKLKDCIVAIISFHSLEDR 237 Query: 257 LVKKFFASRSGKVMAVRHMI---PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 +VK +F S + ++ N H A+ + ITKK ++PT ++ N RSRS+KLR Sbjct: 238 IVKNYFKKWSKSCICPDNVFRCECGNNH-ALGKIITKKPIIPTALEIKQNPRSRSSKLRV 296 >gi|313677372|ref|YP_004055368.1| s-adenosyl-methyltransferase mraw [Marivirga tractuosa DSM 4126] gi|312944070|gb|ADR23260.1| S-adenosyl-methyltransferase MraW [Marivirga tractuosa DSM 4126] Length = 301 Score = 153 bits (387), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 103/299 (34%), Positives = 164/299 (54%), Gaps = 13/299 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H PV+L++ + L P + +D TFG GG+S++ + ++ ++ D+D A E Sbjct: 5 HEPVMLQQCLDGLAIKPNGIYVDLTFGGGGHSKAILEKLTDGKLLGFDQDQDA-EVNAEA 63 Query: 78 MRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + F QA F ++ Y+ K VDGV+ DLGVSS Q + +RGFS + LD Sbjct: 64 IN--HPGFEFVQANFRFVKKYLKLYRIKQVDGVLADLGVSSHQFNKAERGFSTRFDAELD 121 Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM ++A +V+N+ + DL +I G+ GE + A +A AIV R ++P T +L Sbjct: 122 MRMDQHAPVTAKEVINEYSESDLHKIFGLYGEVRNAKTLASAIVSARAASPINTIGELKE 181 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 ++ + + N+ + + FQALRI VN E++ L + L E+ +K GG L+V+S+HSL Sbjct: 182 ILARFAKRGRENKYY--AQVFQALRIEVNEELKALEEALLQMEEVIKPGGRLVVMSYHSL 239 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 EDRLVK + GK+ F+S+ +K + +E++ N R+RSAKLR Sbjct: 240 EDRLVKNYI--NKGKLDGEEEKDFYGNVLKPFKSVNRKPITAEEEELENNNRARSAKLR 296 >gi|258649007|ref|ZP_05736476.1| S-adenosyl-methyltransferase MraW [Prevotella tannerae ATCC 51259] gi|260850623|gb|EEX70492.1| S-adenosyl-methyltransferase MraW [Prevotella tannerae ATCC 51259] Length = 312 Score = 153 bits (387), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 111/308 (36%), Positives = 165/308 (53%), Gaps = 15/308 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76 H+PVLL+ + LN P +D TFG GG+SR + +G N ++A D+D A Q Sbjct: 9 HIPVLLQTTVDGLNVRPDGCYVDCTFGGGGHSREILRRLGPNGRLLAFDQDADA----QR 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + +++ + Q+ F L +++ G VDG++ DLGVSS D DRGFSF+ G L Sbjct: 65 NIPAGEDRLTFVQSNFRYLPNWLHYYGYAQVDGILADLGVSSHHFDAADRGFSFRFEGAL 124 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ SA+ VVN + + L + + GE R+A AI+K R +AP + + L Sbjct: 125 DMRMNKRAHTSAAGVVNTYSEEQLANLFYLYGELNNGRRLAAAIIKARAAAPIERVEQLV 184 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++ T Y + FQALRI VN+E+E L L +A LK GG L ++++HS Sbjct: 185 DVV--TPYLGAARAKKDMAKVFQALRIEVNHEMEALEAMLTAALTLLKPGGRLAILTYHS 242 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDRLVK F + + + + P + + +V+ P + ++ N RSRSAKLR Sbjct: 243 LEDRLVKNFIKAGNATGKVEQDFYGNRLAP--MKPVNGRVIRPDEAEMNANPRSRSAKLR 300 Query: 313 AGMRTVER 320 G ER Sbjct: 301 IGECIAER 308 >gi|269115003|ref|YP_003302766.1| S-adenosyl-methyltransferase mraW [Mycoplasma hominis] gi|268322628|emb|CAX37363.1| S-adenosyl-methyltransferase mraW [Mycoplasma hominis ATCC 23114] Length = 300 Score = 153 bits (387), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 100/302 (33%), Positives = 166/302 (54%), Gaps = 16/302 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQE 76 +H+PVLL +VI L+ P + +D T G GG+S+ K +I D+D A++ +E Sbjct: 2 EHIPVLLNEVIEQLSIKPDGIYVDLTLGRGGHSQEILKRLTTGKLICFDKDIQAINESRE 61 Query: 77 TMRDYKEQFSLFQATF----SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + F L ++ F +L+ DK VDG++ DLGVSS Q+D +RGFS+ + Sbjct: 62 KLIKISQNFILIKSDFRNITCELKKLNIDK-VDGILADLGVSSPQLDDPNRGFSYSINSD 120 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM ++A +++N A K++ IL + K ++ IA AIVK R P + L Sbjct: 121 LDMRMDLDNTLTAKEIINNATEKEIIDILQSNADVKLSNLIAKAIVKNR---PISDSFTL 177 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +I+ ++ + +P+ FQA RI VN+E+ L++ L LK G + +++FH Sbjct: 178 NQIIKDSLPAKIVRQKNPSKAVFQAFRIAVNDELNALSEMLSQLPNLLKKDGKIAIITFH 237 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 S ED +VKKF+ + + ++ ++ H +KV+ P+ ++ N+RSRSAKL Sbjct: 238 SKEDVIVKKFYQNLNYFDPKLKKILIVETHKW-----HQKVIFPSSKEEEINKRSRSAKL 292 Query: 312 RA 313 R Sbjct: 293 RV 294 >gi|154482529|ref|ZP_02024977.1| hypothetical protein EUBVEN_00196 [Eubacterium ventriosum ATCC 27560] gi|149736554|gb|EDM52440.1| hypothetical protein EUBVEN_00196 [Eubacterium ventriosum ATCC 27560] Length = 365 Score = 153 bits (387), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 103/313 (32%), Positives = 162/313 (51%), Gaps = 28/313 (8%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCG 74 G H+ + +++++ L+ PG++ LDAT G GG++ K ++ LD DP + Sbjct: 66 GMHISICVKEILEFLDIKPGQIGLDATLGYGGHTLQMLKKLDRKGHIYGLDIDPIEIKKT 125 Query: 75 QETMRDY---KEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + D K+ + F + + G D ++ DLGVSSMQID +RGF+++ Sbjct: 126 TKRLADKGFGKDVLTTINTNFRNIDQVAKEHGPFDFILADLGVSSMQIDNPERGFTYKYE 185 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTT 188 GPLD+R++ GISA++ + +V +L + +E A IA AIV R R + +TT Sbjct: 186 GPLDLRLNPEKGISAAERLRDISVDELEGMFIENSDEPYAYEIAKAIVARNRTNNKIETT 245 Query: 189 QDLSSLIQKTVYFSKNNRIHPAT-----RSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 DL ++I+K++ A R FQALRI VNNE E L L AL +GG Sbjct: 246 TDLKNVIEKSLCVVPQKERKEAVKKSCARVFQALRIDVNNEFEVLYDFLEKLPDALASGG 305 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 + V++FHS EDRLVKK F + + V+ + K V+ P+ E+ N Sbjct: 306 RVAVLTFHSGEDRLVKKSFKALQKQ--------------GVYSEVAKDVIRPSAEECNTN 351 Query: 304 RRSRSAKLRAGMR 316 R+RS K+R ++ Sbjct: 352 PRARSTKMRWAIK 364 >gi|33864313|ref|NP_895873.1| S-adenosyl-methyltransferase MraW [Prochlorococcus marinus str. MIT 9313] gi|42559451|sp|Q7V4B2|RSMH_PROMM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|33641093|emb|CAE22222.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT 9313] Length = 310 Score = 153 bits (387), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 105/293 (35%), Positives = 161/293 (54%), Gaps = 25/293 (8%) Query: 37 GKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQ 94 G +I+DAT G GG+S + ++ I LD+DP A + E + + ++ ++ F Sbjct: 36 GGLIIDATLGGGGHSALLLERHPDLRLIGLDQDPTARAAAAERLALFGDRVTIVATNFV- 94 Query: 95 LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANV 153 D+ P + V+ DLGVSS Q+D RGFSF+ GPLDMRM+ G +A++++ + Sbjct: 95 --DFSPAEPAVVVMADLGVSSPQLDVAQRGFSFRLDGPLDMRMNPQVGETAAELIGRLEE 152 Query: 154 KDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPAT 211 +L ++ GEE+ + RIA I + P+ T L+ + +++ RIHPAT Sbjct: 153 TELADLIYAYGEERLSRRIARRIKHDLAEQGPYAGTAALAYAVAGCYPPKARHGRIHPAT 212 Query: 212 RSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMA 271 R+FQALRI VNNE++ L + L+ A L GGLL V+SFHSLEDR VK F R ++ Sbjct: 213 RTFQALRIAVNNELDALDRFLQKAPDWLVPGGLLAVISFHSLEDRRVKTAFL-RDQRL-- 269 Query: 272 VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIED 324 + +T+K +V ++ ++A N RSRSAK R R + + D Sbjct: 270 --------------ERLTRKPLVASEMEIAANPRSRSAKCRFARRLPQATTAD 308 >gi|261749334|ref|YP_003257019.1| S-adenosyl-methyltransferase MraW [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497426|gb|ACX83876.1| S-adenosyl-methyltransferase MraW [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 297 Score = 153 bits (387), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 110/301 (36%), Positives = 160/301 (53%), Gaps = 21/301 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H PVLL++ I L + +D TFG GG+S + K +++IA D+D A+ Sbjct: 5 HEPVLLKESIDNLVTDRNGIYVDVTFGGGGHSSAILKKLNENASLIAFDQDKEAIK--NN 62 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +RD + LF F L+ + + V GV+ DLG+SS QID RGFS Q + L Sbjct: 63 PIRD--RRLHLFHKNFIHLKPILKKLRIEKVSGVLADLGLSSSQIDNPIRGFSHQLNCIL 120 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ S SA D++N+ + ++L I GE K A IA I++ R P TT DL Sbjct: 121 DMRMNQESTHSAIDIINRYSKEELFHIFYKYGEFKNAIIIAEKILEERLRKPITTTWDLV 180 Query: 193 SLI-QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +K F K R +R FQ++RI VNNEI L L + + GG + ++S+H Sbjct: 181 KIFFRKKTSFKKRKRF--FSRLFQSIRIEVNNEINVLKNFLLESSTIILPGGRMAIISYH 238 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 S+EDR+ K FF + +++P F+ I KKV+ P +D+ N RSRSA+L Sbjct: 239 SIEDRITKYFFKKGVFHKKKMNNILP-------FKMIHKKVIQPRYQDIINNPRSRSARL 291 Query: 312 R 312 R Sbjct: 292 R 292 >gi|153952604|ref|YP_001398362.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp. doylei 269.97] gi|263445759|sp|A7H4D2|RSMH_CAMJD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|152940050|gb|ABS44791.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp. doylei 269.97] Length = 310 Score = 153 bits (386), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 108/302 (35%), Positives = 162/302 (53%), Gaps = 13/302 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77 H+PVLL +V + LD T G GG+S + K G IA D+D A+ ++ Sbjct: 5 HIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSETLLKNHPGLKFIACDQDQQALEFSKKR 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 ++D+ + + Q+ FS++ + + K + G++ D+GVSS Q+D +RGFS S LDMR Sbjct: 65 LKDFHNRITFIQSNFSEVLEKISHKEELRGILADIGVSSFQLDNNERGFSVN-SDFLDMR 123 Query: 137 MS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M+ S ISA +VVN + LT I GE A IA I R ++ ++L +I Sbjct: 124 MNQNSKISAYEVVNAYTKEQLTSIFKDYGELHDAHFIAEKICLERSKNLIKSAKELYQII 183 Query: 196 QKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 K +N+R I AT +FQA+RI VN E++ L L E +L ++SFHSLE Sbjct: 184 GKG---KQNHRKISKATLAFQAIRIEVNQELKVLKDFLGYLENLKPKNCILAIISFHSLE 240 Query: 255 DRLVKKFFASRSGKVMAVRHMIPS---NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 DR+VK FF S + ++ N H ++ Q ITKK + ++E++ N RS AK+ Sbjct: 241 DRIVKNFFKKWSKNCICDEKIMRCKCGNNH-SLGQIITKKSISASKEELLKNSRSSCAKM 299 Query: 312 RA 313 RA Sbjct: 300 RA 301 >gi|228469401|ref|ZP_04054415.1| S-adenosyl-methyltransferase MraW [Porphyromonas uenonis 60-3] gi|228309085|gb|EEK17715.1| S-adenosyl-methyltransferase MraW [Porphyromonas uenonis 60-3] Length = 310 Score = 153 bits (386), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 117/321 (36%), Positives = 168/321 (52%), Gaps = 36/321 (11%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 MS+ ++HT VL E + LL P + +D T G GG+SR+ + S I LD Sbjct: 1 MSTKLYHTA-----VLCEDSLNLLVTTPSGLYVDVTMGGGGHSRALLERLSPEGRCIGLD 55 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQAT----FSQLQDYVPDKG-VDGVVFDLGVSSMQIDC 120 +DP A++ + R + F AT Q DY G VDG++ DLGVSS D Sbjct: 56 QDPDAMANAPQDSRYH------FVATNFRYLGQWLDYWGLAGEVDGILADLGVSSHHFDS 109 Query: 121 GDRGFSFQKSGPL-DMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178 +RGFSF+ + DMRM S SG++A D++ + + L IL GE A RIA +V Sbjct: 110 EERGFSFRYEEAMPDMRMNSRSGVTARDLLLSYSEEQLADILYYYGELHDARRIAALLVS 169 Query: 179 RRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R + + T L ++ + + +R FQALRI VN+E+ L Q L + + Sbjct: 170 HR-AVGYPTIASLMEVLAPVLPKGGPQLRNKLSRIFQALRIEVNDELGALRQLLSDSVRL 228 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA-------HPAVFQSITKK 291 LK GG + ++S+HSLEDR+VK+FF R G PS A PA + +TKK Sbjct: 229 LKPGGRIAIISYHSLEDRMVKEFF--RLGSFEQ-----PSEALAGMPLSKPAPLRVVTKK 281 Query: 292 VVVPTQEDVAFNRRSRSAKLR 312 + P+ +++A N R+RSAKLR Sbjct: 282 AITPSADEIADNNRARSAKLR 302 >gi|331085870|ref|ZP_08334953.1| ribosomal RNA small subunit methyltransferase H 1 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406793|gb|EGG86298.1| ribosomal RNA small subunit methyltransferase H 1 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 374 Score = 153 bits (386), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 103/319 (32%), Positives = 169/319 (52%), Gaps = 32/319 (10%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF--CKMGS-NVIALDRDPFAVSC 73 +G H+ + +++++ L PG+ LDAT G GG+++ C G ++ ALD DP Sbjct: 72 VGMHISICVKEILDFLQIQPGQKGLDATLGYGGHTKEMLKCLQGQGHLYALDVDPIESVK 131 Query: 74 GQETMRD--YKEQ-FSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQK 129 +E + Y E+ ++ Q F+ + + G D V+ DLGVSSMQID +RGF+++K Sbjct: 132 TKERLEKAGYGEEILTIRQMNFADIDQIAREAGPFDFVLADLGVSSMQIDNPERGFTYKK 191 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQT 187 GPLD+R++ G+SA++ + + ++L +L +E A IA ++++ R+ P +T Sbjct: 192 EGPLDLRLNPQKGVSAAERLKEVTEEELAGMLWENSDEPYAEEIAATVMEKLRKGEPVET 251 Query: 188 TQDLSSLIQKTVYFSKNNRIHPAT-----RSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 T L I++ + F A R+FQALRI VN+E E L + AL G Sbjct: 252 TIQLQKAIEEALSFLPEREQKEAVKKSCQRTFQALRIDVNSEFEVLYAFMEKLPAALAPG 311 Query: 243 GLLIVVSFHSLEDRLVKKFFAS--RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300 G + +++FHS EDR+VKK F R+G ++ I + V+ P+ E+ Sbjct: 312 GRVAILTFHSGEDRIVKKAFKELKRAG----------------IYSEIAQDVIRPSAEEC 355 Query: 301 AFNRRSRSAKLRAGMRTVE 319 N R+RS K+R +R E Sbjct: 356 TRNSRARSTKMRWAVRAKE 374 >gi|57167704|ref|ZP_00366844.1| S-adenosyl-methyltransferase MraW [Campylobacter coli RM2228] gi|57020826|gb|EAL57490.1| S-adenosyl-methyltransferase MraW [Campylobacter coli RM2228] Length = 311 Score = 152 bits (385), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 105/303 (34%), Positives = 158/303 (52%), Gaps = 15/303 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 H+PVLL +V LD T G GG+S S K N+ IA D+D A+ ++ Sbjct: 5 HIPVLLNEVNQAFEKLNSGYFLDCTLGFGGHSESLLKDHPNLKLIACDQDKEALEFSKKR 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVP-DKGVD--GVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + D+K++ + FSQ+ D + DK D G++ D+GVSS Q+D RGF+ S LD Sbjct: 65 LHDFKDRTEFVLSNFSQILDQISHDKLNDLKGILADIGVSSYQLDNNKRGFNLH-SDFLD 123 Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM+ ISA +++N + L+ I GE IA I + RQ ++ ++L Sbjct: 124 MRMNQDVKISAFELINNYTQEQLSDIFKKYGELNDGYFIAQKICQERQKNKIKSAKELYE 183 Query: 194 LIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I KT +N+R + AT FQA+RI VN E+E L L EK +L ++ FHS Sbjct: 184 IIGKT---KQNHRSVSKATLVFQAIRIEVNQELEVLKNFLEKLEKIKLKNCILAIICFHS 240 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPS---NAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 LEDR+VK +F + + N H ++ + I KK + P++E++ N RS A Sbjct: 241 LEDRIVKNYFKKWAKNCICDERAFRCECGNNH-SLGEIINKKAITPSKEEIMINSRSSCA 299 Query: 310 KLR 312 K+R Sbjct: 300 KMR 302 >gi|283953941|ref|ZP_06371470.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp. jejuni 414] gi|283794546|gb|EFC33286.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp. jejuni 414] Length = 309 Score = 152 bits (385), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 103/302 (34%), Positives = 162/302 (53%), Gaps = 13/302 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 H+PVLL +V + LD T G GG+S + K N+ IA D+D A+ ++ Sbjct: 5 HIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKNHPNLKFIACDQDQQALEFSKKR 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDK-GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + + ++ + Q+ F ++ + + K + G++ D+GVSS Q+D +RGFS S LDMR Sbjct: 65 LEHFHDRITFIQSNFGEILEKISHKEDLRGILADIGVSSFQLDNNERGFSLN-SDFLDMR 123 Query: 137 MS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M+ S ISA ++VN + LT I GE A IA I R P ++ ++L +I Sbjct: 124 MNQNSKISAYEIVNTYTKEQLTSIFKEYGELHDAHFIAEKICLARNKNPIKSAKELCQII 183 Query: 196 QKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 K+ +N+R I AT FQA+RI VN E++ L + E +L +++FHSLE Sbjct: 184 GKS---KQNHRKISKATLVFQAIRIEVNQELKVLKDFFKYLENLKPKNCILAIINFHSLE 240 Query: 255 DRLVKKFFASRSGKVMAVRHMIPS---NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 DR+VK FF + + ++ N H ++ Q ITKK + ++E++ N RS AK+ Sbjct: 241 DRIVKNFFKKWAKNCICDEKIMRCECGNNH-SLGQIITKKAISASKEELLKNSRSSCAKM 299 Query: 312 RA 313 RA Sbjct: 300 RA 301 >gi|268680046|ref|YP_003304477.1| S-adenosyl-methyltransferase MraW [Sulfurospirillum deleyianum DSM 6946] gi|268618077|gb|ACZ12442.1| S-adenosyl-methyltransferase MraW [Sulfurospirillum deleyianum DSM 6946] Length = 304 Score = 152 bits (385), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 105/299 (35%), Positives = 163/299 (54%), Gaps = 11/299 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 H+PVLLE+V A + VI+D T G GG+S + + ++ I D+D A++ ++ Sbjct: 5 HIPVLLEEVKAAFSNISDGVIIDCTLGYGGHSEALLEQNPHIRLIGCDQDEEALAFSKKR 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 + + E+ F+ + + G++ D+GVSS+Q+D +RGF+F S LDMRM Sbjct: 65 LERFGERVMFHHGNFASVIAQYAHLPIRGILADIGVSSLQLDKKERGFAFD-SEVLDMRM 123 Query: 138 S-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 + +SA +VVN + L I GE ++A + + R AP Q+ ++LS L Q Sbjct: 124 NPHQSLSAYEVVNHYTKEQLEFIFREYGEIHAYQKMAQLMCEARLKAPIQSAKELSFLAQ 183 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 K IHPAT FQA+RI VNNE+ L Q L S + A ++ ++SFHSLEDR Sbjct: 184 K---IPGKKSIHPATLLFQAIRIEVNNELGVLTQLLESIQNAGFTQCIVGIISFHSLEDR 240 Query: 257 LVKKFFASRSGKVMAVRHM---IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 +VK+ F S + H+ + N H A+ + I+KK + + ++ N RSRSA+LR Sbjct: 241 IVKQTFKFWSQNCICPPHVMRCMCGNNH-ALGKIISKKPIEASPLELKKNPRSRSARLR 298 >gi|330950233|gb|EGH50493.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae Cit 7] Length = 187 Score = 152 bits (385), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 81/180 (45%), Positives = 117/180 (65%), Gaps = 6/180 (3%) Query: 88 FQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GI 142 Q +F++L ++G V G++ DLGVSS Q+D +RGFSF GPLDMRM + G+ Sbjct: 1 MQRSFAELGSETQERGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDGPLDMRMDPTRGV 60 Query: 143 SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS 202 SA++ + A +++ R+ GEE+ A R+A+A+V RR+ PF T DL+ ++ K + Sbjct: 61 SAAEFIATAPAEEIARVFKEYGEERFAKRMANAVVARREVQPFDRTADLAEVL-KVANPA 119 Query: 203 KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF 262 +PATR+FQ LRI VNNE+ +L GL +A AL+ GG L+V+SFHSLEDR+VK F Sbjct: 120 WEKGKNPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLVVISFHSLEDRIVKLFM 179 >gi|160878432|ref|YP_001557400.1| S-adenosyl-methyltransferase MraW [Clostridium phytofermentans ISDg] gi|263433271|sp|A9KS30|RSMH1_CLOPH RecName: Full=Ribosomal RNA small subunit methyltransferase H 1; AltName: Full=16S rRNA m(4)C1402 methyltransferase 1; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH 1 gi|160427098|gb|ABX40661.1| S-adenosyl-methyltransferase MraW [Clostridium phytofermentans ISDg] Length = 366 Score = 152 bits (384), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 106/315 (33%), Positives = 164/315 (52%), Gaps = 32/315 (10%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCG 74 G H+ + + +++ L PG+ LDAT G GG++R K ++ ALD DP + Sbjct: 67 GMHISICVNEILEFLQIKPGQKGLDATLGYGGHTREMLKCLESQGHMYALDVDPIEIVKT 126 Query: 75 QETMRDY---KEQFSLFQATFSQLQDYVPDKGV-DGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E +++ E ++ Q F+ + + V + G+ D V+ DLGVSSMQID DRGFSF+ Sbjct: 127 RERLQNLGFGPEILTIKQLNFANIDEVVEEAGLFDFVLADLGVSSMQIDDPDRGFSFKTD 186 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTT 188 GPLD+R++ GISA++ + + +L +L +E + I+ AIV ++ TT Sbjct: 187 GPLDLRLNPEKGISAAERLKTISQTELQGMLLENSDEPYSEEISKAIVNEIKRGNEIDTT 246 Query: 189 QDLSSLIQKTVYFSKNNRIHPAT-----RSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 L LI K + N A R+FQALRI VNNE E L L L GG Sbjct: 247 TKLRDLISKVLVTIPENEQKEAIKKTCQRTFQALRIDVNNEYEVLYSFLEKLPNVLAKGG 306 Query: 244 LLIVVSFHSLEDRLVKKFFAS--RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 + +++FHS EDRLVKK F + R+G ++ ++ V+ P+ E+ Sbjct: 307 RVAILTFHSGEDRLVKKSFKNLQRAG----------------IYSEVSDDVIRPSAEECN 350 Query: 302 FNRRSRSAKLRAGMR 316 N R+RS K+R ++ Sbjct: 351 RNPRARSTKMRWAIK 365 >gi|263447881|sp|A7ZD05|RSMH_CAMC1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 307 Score = 152 bits (384), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 106/304 (34%), Positives = 165/304 (54%), Gaps = 18/304 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 H+ VLL++V++ G I D T G G+S + N+ IA D+D A++ + Sbjct: 5 HISVLLDEVLSFFKDLRGNFI-DCTLGYAGHSSAILSQNENLNLIACDKDIEAINFSLKK 63 Query: 78 MRDYKEQFSLFQATFSQL-----QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + + ++++ FS+L D + + V G++ D+GVSS+QID DRGF S Sbjct: 64 LEPFGSRVKIYKSNFSELISKLSSDEISN--VRGILADIGVSSLQIDKDDRGFGLGSS-A 120 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM G SA DVVN + +L RI GE K AS IA+ I+ R + ++L Sbjct: 121 LDMRMDKERGFSAYDVVNGYSFDELVRIFRDYGELKNASGIANKIINARNLGEITSAKEL 180 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +++I + K + PA +FQA+RI VN E++EL L S EK L+ +++FH Sbjct: 181 ANII--GIAQIKGRGVSPAILAFQAIRIEVNGELDELTNLLDSIEKGGFKDCLVTIITFH 238 Query: 252 SLEDRLVKKFFASRSGKVM---AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SLEDR+VK+ F + + + N H + + +TKK + +Q ++A N RS+S Sbjct: 239 SLEDRIVKERFKKWANSCICPPGIYRCECGNNHE-LGEILTKKPLTASQSELAQNSRSKS 297 Query: 309 AKLR 312 AKLR Sbjct: 298 AKLR 301 >gi|47459215|ref|YP_016077.1| S-adenosylmethionine-dependent methyltransferase [Mycoplasma mobile 163K] gi|51316218|sp|Q6KHR2|RSMH_MYCMO RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|47458544|gb|AAT27866.1| S-adenosylmethionine-dependent methyltransferase [Mycoplasma mobile 163K] Length = 302 Score = 152 bits (384), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 98/308 (31%), Positives = 168/308 (54%), Gaps = 18/308 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H+P+LL +V++ N V++D T G G+S+ K +I +D+D A++ +E Sbjct: 6 HIPILLNEVLSAFNLKETDVVIDLTLGRAGHSQEMLKKIPKGLLIGIDKDKSAITFSKEK 65 Query: 78 MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + F LF + FS++ D + + V+ ++ DLG+SS QID +RGFS+ K LD Sbjct: 66 LEQIGSNFKLFHSDFSKISDLLKELKISKVNAILIDLGISSPQIDNANRGFSYNKESRLD 125 Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM+ + A +VN + + L +L E K + +IA I R P +TT LS Sbjct: 126 MRMNLDQKLDAHFIVNSYSEEQLKNLLYRNAEIKNSRQIAKIITSNR---PIETTLQLSV 182 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 +++K + + P+ FQALR+ VN+EI L L++ L+ G + +++F+S+ Sbjct: 183 ILKKYLPAFIVRKKDPSKAVFQALRVEVNDEINSLNFLLKNLVSILEENGKVAIITFNSI 242 Query: 254 EDRLVKKFFAS-RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 EDR+VKK+F S V+A +P+ + K +P+++++ N RS+SAK+R Sbjct: 243 EDRIVKKYFGSFIKDDVLA---FLPTKKE----KEFEVKTYLPSKKELEENPRSKSAKMR 295 Query: 313 AGMRTVER 320 ++ +ER Sbjct: 296 V-LKKIER 302 >gi|88809878|ref|ZP_01125384.1| methyltransferase [Synechococcus sp. WH 7805] gi|88786262|gb|EAR17423.1| methyltransferase [Synechococcus sp. WH 7805] Length = 312 Score = 152 bits (384), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 105/311 (33%), Positives = 160/311 (51%), Gaps = 37/311 (11%) Query: 20 HVPVLLEKVIALLNPAPGK-----VILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVS 72 HVPVL + ++ L+ P +++DAT G GG+S G +I LD+D A + Sbjct: 14 HVPVLADVLLKTLDQEPSDHWQSGLVVDATLGGGGHSSLLLDRYPGLRLIGLDQDATARA 73 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +R ++E+ ++ F+ DY P V+ DLGVSS Q+D RGFSF+ GP Sbjct: 74 AAAARLRPWQERVTIVATNFA---DYSPPGSASLVLADLGVSSPQLDVAQRGFSFRLDGP 130 Query: 133 LDMRMS--CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM+ G +A+ ++ + DL ++ GEE+ + RIA I + Q T Sbjct: 131 LDMRMNPEGGGETAAQLIERLKESDLADLIYAYGEERLSRRIARRI---KADLAVQGTYS 187 Query: 191 LSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 ++ + + ++ RIHPATR+FQALRI VN+E+ L + L + L+ GG+L Sbjct: 188 GTAALAYAIAGCYPPKARRGRIHPATRTFQALRIAVNHELAALDRLLEQSPDWLQPGGML 247 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 ++SFHSLEDR VK F + IT++ + ++++ N R Sbjct: 248 AIISFHSLEDRRVKTAF-----------------LQDERLERITRRPLTASEDEQERNAR 290 Query: 306 SRSAKLRAGMR 316 SRSAKLR R Sbjct: 291 SRSAKLRIARR 301 >gi|325662020|ref|ZP_08150639.1| ribosomal RNA small subunit methyltransferase H 1 [Lachnospiraceae bacterium 4_1_37FAA] gi|325471683|gb|EGC74902.1| ribosomal RNA small subunit methyltransferase H 1 [Lachnospiraceae bacterium 4_1_37FAA] Length = 374 Score = 152 bits (384), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 103/319 (32%), Positives = 169/319 (52%), Gaps = 32/319 (10%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF--CKMGS-NVIALDRDPFAVSC 73 +G H+ + +++++ L PG+ LDAT G GG+++ C G ++ ALD DP Sbjct: 72 VGMHISICVKEILDFLQIQPGQKGLDATLGYGGHTKEMLKCLQGQGHLYALDVDPIESVK 131 Query: 74 GQETMRD--YKEQ-FSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQK 129 +E + Y E+ ++ Q F+ + + G D V+ DLGVSSMQID +RGF+++K Sbjct: 132 TKERLEKAGYGEEILTIRQMNFADIDQIAREAGPFDFVLADLGVSSMQIDNPERGFTYKK 191 Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQT 187 GPLD+R++ G+SA++ + + ++L +L +E A IA ++++ R+ P +T Sbjct: 192 EGPLDLRLNPQKGVSAAERLKEVTEEELAGMLWENSDEPYAEEIAVTVMEKLRKGEPVET 251 Query: 188 TQDLSSLIQKTVYFSKNNRIHPAT-----RSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 T L I++ + F A R+FQALRI VN+E E L + AL G Sbjct: 252 TIQLQKAIEEALSFLPEREQKEAVKKSCQRTFQALRIDVNSEFEVLYAFMEKLPAALAPG 311 Query: 243 GLLIVVSFHSLEDRLVKKFFAS--RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300 G + +++FHS EDR+VKK F R+G ++ I + V+ P+ E+ Sbjct: 312 GRVAILTFHSGEDRIVKKAFKELKRAG----------------IYSEIAQDVIRPSAEEC 355 Query: 301 AFNRRSRSAKLRAGMRTVE 319 N R+RS K+R +R E Sbjct: 356 TRNSRARSTKMRWAVRAKE 374 >gi|302387032|ref|YP_003822854.1| S-adenosyl-methyltransferase MraW [Clostridium saccharolyticum WM1] gi|302197660|gb|ADL05231.1| S-adenosyl-methyltransferase MraW [Clostridium saccharolyticum WM1] Length = 349 Score = 152 bits (384), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 109/316 (34%), Positives = 166/316 (52%), Gaps = 32/316 (10%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCG 74 G H + +++++ L PG+ LDAT G GG++ K ++ A D D + Sbjct: 50 GMHRSICVKEILDFLQITPGQTGLDATLGYGGHTLEMLKCLNSKGHLYATDVDSIELPRT 109 Query: 75 QETMRDY---KEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E + E ++ Q FS + + G ++ ++ DLGVSSMQID +RGFSF+ Sbjct: 110 RERLEHLGYGSEILTIRQTNFSNIDQITSESGPLNFILADLGVSSMQIDNPERGFSFKTE 169 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTT 188 GPLD+R++ S GISA+D + + ++L +L +E A+ IA AIV ++ TT Sbjct: 170 GPLDLRLNPSKGISAADRLKTISQEELHGMLLENADEPHAAEIAGAIVTAIKKGTDITTT 229 Query: 189 QDLSSLIQKTVYF----SKNNRIHPAT-RSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 L +IQ + F +NN I + RSFQALRI VNNE E L + L AL GG Sbjct: 230 SQLQQIIQDALKFIPEKERNNEIKKSCQRSFQALRIDVNNEFEVLYEFLEKLPAALAEGG 289 Query: 244 LLIVVSFHSLEDRLVKKFFAS--RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 + +++FHS EDRLVKK F R G V++ IT + + P+ + + Sbjct: 290 RVAILTFHSGEDRLVKKSFQRFYREG----------------VYKEITPEAIRPSAAECS 333 Query: 302 FNRRSRSAKLRAGMRT 317 N R+R AKLR +++ Sbjct: 334 SNSRARCAKLRWAIKS 349 >gi|239624706|ref|ZP_04667737.1| S-adenosyl-methyltransferase MraW [Clostridiales bacterium 1_7_47_FAA] gi|239521092|gb|EEQ60958.1| S-adenosyl-methyltransferase MraW [Clostridiales bacterium 1_7_47FAA] Length = 362 Score = 152 bits (384), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 107/317 (33%), Positives = 168/317 (52%), Gaps = 32/317 (10%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF--CKMG-SNVIALDRDPFAVSC 73 +G H+ +++++++ L PG+ LDAT G GG+++ C G ++ ALD D ++ Sbjct: 62 VGMHISIMVKEILDFLEIQPGQTGLDATLGYGGHTQEMLKCLQGQGHLHALDVDTIEMAK 121 Query: 74 GQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQK 129 +E + E ++ Q F+ + + G D V+ DLGVSSMQID +RGFSF+K Sbjct: 122 TRERLGKLGYGLEILTIRQLNFADIDQLAAETGPFDFVLADLGVSSMQIDNPERGFSFKK 181 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQT 187 GPLD+R+ S GI AS+ + + ++LT +L +E A I+ A+V R ++ T Sbjct: 182 DGPLDLRLDSSRGIPASERLRHISREELTGMLIENSDEPYAEEISRAVVNRIKRGDGIDT 241 Query: 188 TQDLSSLIQKTVYFSKNNRIHPAT-----RSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 T L I++T+ F + A R+FQALRI +N+E E L Q L L G Sbjct: 242 TTQLRETIEQTLSFIPESDRKEAVKKSCQRTFQALRIDINSEFEVLYQFLEKLPDVLAKG 301 Query: 243 GLLIVVSFHSLEDRLVKKFFAS--RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300 G + V++FHS EDR+VKK F R G V+ I V+ P+ E+ Sbjct: 302 GRVAVLTFHSGEDRIVKKSFKDLYRQG----------------VYSEIAGDVIRPSAEEC 345 Query: 301 AFNRRSRSAKLRAGMRT 317 + N R+RS K+R +++ Sbjct: 346 SMNSRARSTKMRWAIKS 362 >gi|116511689|ref|YP_808905.1| SAM-dependent methyltransferase for cell envelope biogenesis [Lactococcus lactis subsp. cremoris SK11] gi|116107343|gb|ABJ72483.1| SAM-dependent methyltransferase for cell envelope biogenesis [Lactococcus lactis subsp. cremoris SK11] gi|300071267|gb|ADJ60667.1| S-adenosyl-methyltransferase MraW [Lactococcus lactis subsp. cremoris NZ9000] Length = 298 Score = 152 bits (383), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 101/296 (34%), Positives = 163/296 (55%), Gaps = 11/296 (3%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFC-KMGS-NVIALDRDPFAVSCGQETMRDY--KEQFS 86 +L P + +DAT G G+S K+ + ++ + D+D A + + + + +++ + Sbjct: 1 MLEVKPNGIYVDATLGGAGHSEYLLSKLTTGHLYSFDQDETAHANAKVRLSEQLAEDKVT 60 Query: 87 LFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GI 142 L ++ F L+ + + +DG+++DLGVSS Q D RGFS++K LDMRM S + Sbjct: 61 LIKSNFRNLKSALAELDITKIDGILYDLGVSSPQFDDSQRGFSYKKEARLDMRMDQSQTL 120 Query: 143 SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS 202 SA +VVN + L RI GE+K + +IA I + R+ P +TT +L+ LI+ + Sbjct: 121 SAYEVVNDYPYEALVRIFFRYGEDKFSKQIARKIEQSRKIKPIETTIELADLIKSALPQK 180 Query: 203 K-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKF 261 + + HPA R FQA+RI VN+E+ + + A LK G + V++FHSLEDRL K Sbjct: 181 ELKKKGHPAKRIFQAIRIEVNDELGAAEESIEQAIDLLKVDGRISVITFHSLEDRLTKSI 240 Query: 262 FASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 F S V M+P A + I +K V+ ++E++ FN R+ SAKLR + Sbjct: 241 FKEYSTVNVPKGLPMLPKEME-AKLKLINRKPVLASEEELEFNNRAHSAKLRVAQK 295 >gi|32475279|ref|NP_868273.1| methyltransferase [Rhodopirellula baltica SH 1] gi|42559448|sp|Q7UFX8|RSMH_RHOBA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|32445820|emb|CAD78551.1| conserved hypothetical protein-putative methyltransferase [Rhodopirellula baltica SH 1] Length = 325 Score = 152 bits (383), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 107/314 (34%), Positives = 164/314 (52%), Gaps = 33/314 (10%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM----GSN-----VIALDRDPF 69 +HV V+ +++ + I+D T+G GG++R ++ GS+ VIA+DRDP Sbjct: 27 EHVSVMPNEIVQWVREINPTTIIDGTYGGGGHTRLLAEVLADAGSDSDTPRVIAIDRDPA 86 Query: 70 AVSCG-QETMRDYKEQFSLFQATFS---QLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125 V Q++ + LF ++ + D + D +V DLG+SS Q+ +RGF Sbjct: 87 VVRRDEQKSWIKDDPRIELFLGSYESSPKALDALDLTHADALVLDLGLSSDQLADRNRGF 146 Query: 126 SFQ-KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQS 182 +F LD+R +G+ A + Q + K++ + GEE+ + RIA I R R+ Sbjct: 147 TFTIDDAELDLRFDPENGVPAHRWLQQHSEKEIADAIYRFGEERFSRRIAKQIFLRARER 206 Query: 183 APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 P +L + ++ V S+N+ IHPATR+FQALRI VN+E+ L + L+SA + G Sbjct: 207 NPVTKVGELVEICRRCVPRSRNHDIHPATRTFQALRIAVNDELGGLTRTLQSAPDWIAPG 266 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G + V+SFHSLEDR+VK F ++ +TKK + PT E+V Sbjct: 267 GRVAVISFHSLEDRIVKNAFREDHR-----------------WEILTKKPLRPTDEEVQA 309 Query: 303 NRRSRSAKLRAGMR 316 N RSRSAKLR R Sbjct: 310 NPRSRSAKLRVAKR 323 >gi|307297403|ref|ZP_07577209.1| S-adenosyl-methyltransferase MraW [Thermotogales bacterium mesG1.Ag.4.2] gi|306916663|gb|EFN47045.1| S-adenosyl-methyltransferase MraW [Thermotogales bacterium mesG1.Ag.4.2] Length = 299 Score = 152 bits (383), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 95/273 (34%), Positives = 151/273 (55%), Gaps = 28/273 (10%) Query: 41 LDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD 97 +D T G GG+ R+ + + +I LD D ++ ++ ++DY+E LF ++ + Sbjct: 31 IDCTAGEGGHIRAMLEATEGQAKIIGLDVDSEVLNIAEQNLKDYRESVELFNLSYVDFEI 90 Query: 98 YVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANV 153 + GV DG + D+GVS+ Q+ RGFS++ PLDMRM+ S +A+DVVN Sbjct: 91 ALRQAGVEKVDGFLLDVGVSTFQLKAKGRGFSYELDEPLDMRMNLSQKRTAADVVNSYRE 150 Query: 154 KDLTRILGILGEEKQ-ASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSK--NNRIHPA 210 +L+RI+ G+EK+ A +IA +IV RR P TT+DL I+ + ++ R H A Sbjct: 151 DELSRIIFEFGDEKRFARKIARSIVSRR---PLFTTKDLHDAIKAAIPPAERYKRRRHFA 207 Query: 211 TRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVM 270 T++FQA+RI VN E+E + LR L GG ++++SFHSLED + K+ F +S + Sbjct: 208 TKTFQAVRIEVNQELENIESTLRKIPGFLNQGGRIVIISFHSLEDGIAKRVFREKSESEL 267 Query: 271 AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 + +TKK V P++E+V N Sbjct: 268 KI---------------LTKKPVQPSKEEVELN 285 >gi|157164915|ref|YP_001466663.1| S-adenosyl-methyltransferase MraW [Campylobacter concisus 13826] gi|112800495|gb|EAT97839.1| S-adenosyl-methyltransferase MraW [Campylobacter concisus 13826] Length = 334 Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 105/302 (34%), Positives = 163/302 (53%), Gaps = 14/302 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 H+ VLL++V++ G I D T G G+S + N+ IA D+D A++ + Sbjct: 32 HISVLLDEVLSFFKDLRGNFI-DCTLGYAGHSSAILSQNENLNLIACDKDIEAINFSLKK 90 Query: 78 MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + + + ++++ FS+L + V G++ D+GVSS+QID DRGF S LD Sbjct: 91 LEPFGSRVKIYKSNFSELISKLSSDEISNVRGILADIGVSSLQIDKDDRGFGLGSS-ALD 149 Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM G SA DVVN + +L RI GE K AS IA+ I+ R + ++L++ Sbjct: 150 MRMDKERGFSAYDVVNGYSFDELVRIFRDYGELKNASGIANKIINARNLGEITSAKELAN 209 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 +I + K + PA +FQA+RI VN E++EL L S EK L+ +++FHSL Sbjct: 210 II--GIAQIKGRGVSPAILAFQAIRIEVNGELDELTNLLDSIEKGGFKDCLVTIITFHSL 267 Query: 254 EDRLVKKFFASRSGKVMA---VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 EDR+VK+ F + + + N H + + +TKK + +Q ++A N RS+SAK Sbjct: 268 EDRIVKERFKKWANSCICPPGIYRCECGNNHE-LGEILTKKPLTASQSELAQNSRSKSAK 326 Query: 311 LR 312 LR Sbjct: 327 LR 328 >gi|88801293|ref|ZP_01116821.1| S-adenosyl-methyltransferase MraW [Polaribacter irgensii 23-P] gi|88781951|gb|EAR13128.1| S-adenosyl-methyltransferase MraW [Polaribacter irgensii 23-P] Length = 299 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 109/306 (35%), Positives = 162/306 (52%), Gaps = 29/306 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H PVLL++ + L + +D TFG GG+S+ ++G + + D+DP A+ E Sbjct: 4 HSPVLLKESVDALAIKENGIYVDVTFGGGGHSKEILSRLGDSGRLFGFDQDPDALENIIE 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 R F+L F + ++ GV DG++ DLGVSS Q D DRGFS + G L Sbjct: 64 DAR-----FTLIPENFRYISRFLRFHGVKKVDGILADLGVSSHQFDEADRGFSTRFDGDL 118 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ S +SA +V+ + + L IL + GE + + IA IV++RQ +T+ L Sbjct: 119 DMRMNQKSKVSAKEVIGTYSEEKLAEILFLYGELRNSRNIAKTIVEKRQEEKIETSFQLK 178 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +QK + + ++I + FQA+RI VN E+E L + L LK G L V+S+HS Sbjct: 179 EALQKYLPNAVEHKI--LAQIFQAVRIEVNEELEVLKEFLLQTPNLLKEKGRLSVISYHS 236 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI------TKKVVVPTQEDVAFNRRS 306 LEDRLVK+F R+G + F +I K++VP ++V N R+ Sbjct: 237 LEDRLVKRFI--RTG-------LFIGEPEKDFFGNIEVPMQKVGKLIVPDAKEVKVNNRA 287 Query: 307 RSAKLR 312 RSAKLR Sbjct: 288 RSAKLR 293 >gi|94502345|ref|ZP_01308815.1| S-adenosyl-methyltransferase MraW [Candidatus Sulcia muelleri str. Hc (Homalodisca coagulata)] gi|161833845|ref|YP_001598041.1| S-adenosyl-methyltransferase MraW [Candidatus Sulcia muelleri GWSS] gi|259495905|sp|A8Z694|RSMH_SULMW RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|94451100|gb|EAT14055.1| S-adenosyl-methyltransferase MraW [Candidatus Sulcia muelleri str. Hc (Homalodisca coagulata)] gi|152206335|gb|ABS30645.1| S-adenosyl-methyltransferase MraW [Candidatus Sulcia muelleri GWSS] Length = 300 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 98/306 (32%), Positives = 166/306 (54%), Gaps = 17/306 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+PVLL+++++ L + +D TFG GG+S S SN VIA D+D S Sbjct: 5 HIPVLLDEILSFLVKEKNGIYIDTTFGGGGHSLSLLNKLSNKGRVIAFDKD--IDSIKNN 62 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + D +F+L + + ++ + V G++ DLG+SS QI+ RGFS + + L Sbjct: 63 NILD--ARFNLIKTNYRFIKKKIKLFNLNKVSGILADLGISSHQINSPKRGFSIRYNSIL 120 Query: 134 DMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + + I+A ++N + +L +L GE K A I+ I+K R+ ++T DL Sbjct: 121 DMRMDTYNKINAQHIINNYSYNELYNLLIRFGEVKNAKNISKLILKHRKKKYIKSTFDLI 180 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++ ++ K N+ ++ FQ+LRI VN+EI L L+++ LK GG + V+S+HS Sbjct: 181 KIL--NFFYKKKNKF--LSKIFQSLRIEVNDEINALKDLLKNSLSILKPGGRIAVISYHS 236 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 +EDR+VKKF + + + +N P + + +++ ++E+ N RSRSA LR Sbjct: 237 IEDRIVKKFLKTGNFNGIIPYDEYGNNLSPLIL--LEPRIIFSSKEEKKENNRSRSAILR 294 Query: 313 AGMRTV 318 + + Sbjct: 295 IAEKKI 300 >gi|154174311|ref|YP_001408418.1| S-adenosyl-methyltransferase MraW [Campylobacter curvus 525.92] gi|263445746|sp|A7GYX6|RSMH_CAMC5 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|112802943|gb|EAU00287.1| S-adenosyl-methyltransferase MraW [Campylobacter curvus 525.92] Length = 308 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 105/307 (34%), Positives = 170/307 (55%), Gaps = 24/307 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 H+ VLL++V+ + G I D T G GG+S + + N+ IA D+D A+ ++ Sbjct: 5 HISVLLDEVLDAFHGLSGTFI-DCTLGYGGHSGALLEQNKNLRLIACDKDDEAIEFSKKR 63 Query: 78 MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + ++ ++ ++++ FSQL + K V G++ D+GVSS+Q+D +RGFS S LD Sbjct: 64 LENFGDRVKIYKSDFSQLIKVLSTDELKNVRGILADIGVSSLQLDKNERGFSIN-SDTLD 122 Query: 135 MRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 MRM +C SA+DV+N + ++L I GE A +A IV R + ++L+ Sbjct: 123 MRMDRACE-FSAADVINSYSQQNLAEIFSKYGELSNAKALAAKIVSARNLKKITSAKELA 181 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 S+I ++ + PA +FQA+R+ VN+E+ EL + L S + A + ++SFHS Sbjct: 182 SIIGTGRVNGRS--VSPAILAFQAIRVEVNDELGELNRLLESIKSANLKECKVAIISFHS 239 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNA-------HPAVFQSITKKVVVPTQEDVAFNRR 305 LEDR+VK F S A + P NA A+ + +TKK +V +Q+++A N R Sbjct: 240 LEDRIVKNTFKS-----WAQSCICPPNAMRCKCGNDHAIGKILTKKAIVASQKEIAANPR 294 Query: 306 SRSAKLR 312 S SAK+R Sbjct: 295 SSSAKMR 301 >gi|332518989|ref|ZP_08395456.1| S-adenosyl-methyltransferase MraW [Lacinutrix algicola 5H-3-7-4] gi|332044837|gb|EGI81030.1| S-adenosyl-methyltransferase MraW [Lacinutrix algicola 5H-3-7-4] Length = 300 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 106/303 (34%), Positives = 166/303 (54%), Gaps = 23/303 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76 H PVLL + + L+ P V +D TFG GG+S+ K +G + + A D+D A+ + Sbjct: 6 HNPVLLNETVDGLDIKPNGVYVDVTFGGGGHSKEILKRLGEHGKLFAFDQDADALENKID 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 R F+L F ++ ++ GV DG++ D GVSS Q D +RGFS + + L Sbjct: 66 DPR-----FTLIHENFRYIKRFLRFHGVKEVDGILADFGVSSHQFDVAERGFSTRFAADL 120 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ + +SA VVN+ + + + ++L GE + A +A IV R++ +T+ L Sbjct: 121 DMRMNQKNDLSAFHVVNEYDEEQIKQVLLQYGELRAAPAMARLIVDYRKNEVIKTSDQLK 180 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++++K + N+I + +QA+RI VN EIE L + L + LK G L ++S+HS Sbjct: 181 TILKKFLSPKHENKI--LAQIYQAIRIEVNQEIEALKEFLSQTPEILKPNGRLSLISYHS 238 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV---VVPTQEDVAFNRRSRSA 309 LEDRLVK+F R+G P F+ KKV ++P+ E++ N R+RSA Sbjct: 239 LEDRLVKRFI--RNGLFEGE----PERDVFGRFEVPLKKVGKLIIPSAEEIKINNRARSA 292 Query: 310 KLR 312 KLR Sbjct: 293 KLR 295 >gi|293977957|ref|YP_003543387.1| S-adenosyl-methyltransferase MraW [Candidatus Sulcia muelleri DMIN] gi|292667888|gb|ADE35523.1| S-adenosyl-methyltransferase MraW [Candidatus Sulcia muelleri DMIN] Length = 300 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 98/306 (32%), Positives = 166/306 (54%), Gaps = 17/306 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+PVLL+++++ L + +D TFG GG+S S SN VIA D+D S Sbjct: 5 HIPVLLDEILSFLVKEKNGIYIDTTFGGGGHSLSLLNKLSNKGRVIAFDKD--IDSIKNN 62 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + D +F+L + + ++ + V G++ DLG+SS QI+ RGFS + + L Sbjct: 63 NILD--ARFNLIKTNYRFIKKKIKLFNLNKVSGILADLGISSHQINSPKRGFSIRYNSIL 120 Query: 134 DMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + + I+A ++N + +L +L GE K A I+ I+K R+ ++T DL Sbjct: 121 DMRMDTYNKINAQHIINNYSYNELYNLLIRFGEVKNAKNISKLILKHRKKKYIKSTFDLI 180 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++ ++ K N+ ++ FQ+LRI VN+EI L L+++ LK GG + V+S+HS Sbjct: 181 KIL--NFFYKKKNKY--LSKIFQSLRIEVNDEINALKDLLKNSLSILKPGGRIAVISYHS 236 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 +EDR+VKKF + + + +N P + + +++ ++E+ N RSRSA LR Sbjct: 237 IEDRIVKKFLKTGNFNGIIPYDEYGNNLSPLIL--LEPRIIFSSKEEKKENNRSRSAILR 294 Query: 313 AGMRTV 318 + + Sbjct: 295 IAEKKI 300 >gi|313886065|ref|ZP_07819803.1| S-adenosyl-methyltransferase MraW [Porphyromonas asaccharolytica PR426713P-I] gi|312924595|gb|EFR35366.1| S-adenosyl-methyltransferase MraW [Porphyromonas asaccharolytica PR426713P-I] Length = 310 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 116/322 (36%), Positives = 169/322 (52%), Gaps = 30/322 (9%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65 MS+ ++HT VL E + LL P + +D T G GG+SR+ + I LD Sbjct: 1 MSAKLYHTA-----VLCEDSLDLLVTTPTGLYVDVTMGGGGHSRALLERLAPEGRCIGLD 55 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQAT----FSQLQDYVPDKG-VDGVVFDLGVSSMQIDC 120 +DP AV R + F AT Q DY G VDG++ DLGVSS D Sbjct: 56 QDPDAVVNAPTDSRYH------FVATNFRYLGQWLDYWGLTGQVDGILADLGVSSHHFDS 109 Query: 121 GDRGFSFQKSGPL-DMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178 +RGFSF+ + DMRM S SG++A D++ + + L IL GE A RIA +V Sbjct: 110 EERGFSFRYEEAMPDMRMNSRSGVTARDILLSYSEEQLADILYYYGELHDARRIAALLVS 169 Query: 179 RRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R + + T L ++ + + +R FQALRI VN+E+ L Q L + + Sbjct: 170 HR-AVGYPTIAALMEVLTPVLPKGGPQLRNKLSRIFQALRIEVNDELGALRQLLSDSVRL 228 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFA----SRSGKVMAVRHMIPSNAHPAVFQSITKKVVV 294 LK GG + ++S+HSLEDR+VK+FF + + +A +P +A PA + +TKK + Sbjct: 229 LKPGGRIAIISYHSLEDRMVKEFFRLGCFEQPSEALA---GMPLSA-PAPLRVVTKKAIT 284 Query: 295 PTQEDVAFNRRSRSAKLRAGMR 316 P+ +++A N R+RSAKLR R Sbjct: 285 PSADEIADNNRARSAKLRVAER 306 >gi|150026102|ref|YP_001296928.1| S-adenosyl-methyltransferase MraW [Flavobacterium psychrophilum JIP02/86] gi|263447480|sp|A6H1A2|RSMH_FLAPJ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|149772643|emb|CAL44126.1| S-adenosyl-methyltransferase MraW [Flavobacterium psychrophilum JIP02/86] Length = 291 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 104/302 (34%), Positives = 165/302 (54%), Gaps = 29/302 (9%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMG--SNVIALDRDPFAVSCGQETMRD 80 +L++ + LN P V +D TFG GG+S+ ++G + D+D + + D Sbjct: 1 MLKETVDGLNIKPDGVYVDVTFGGGGHSKEILSRLGPEGKLFGFDQDE---DAWENALPD 57 Query: 81 YKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 E+F+L Q F ++ ++ G VDG++ DLGVSS Q D +RGFS + LDMRM Sbjct: 58 --ERFTLIQENFRYIKRFLRFNGIKKVDGILADLGVSSHQFDVPERGFSTRFDAELDMRM 115 Query: 138 SC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 S + ++A ++VN+ + +L RI GE A IA AI++ R+ T+DL ++ Sbjct: 116 SKKNDLTAFNIVNEYDETNLRRIFAEYGELGNALAIARAIIEAREKEKIVNTEDLKQVLA 175 Query: 197 KTVYFSKNNRIHPA-TRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + F NN+ H + +Q++RI VN E++ L + L + + L GG L V+S+HSLED Sbjct: 176 R---FLPNNKAHKILAQIYQSIRIEVNQEMDVLKEFLEQSLEVLDQGGRLSVISYHSLED 232 Query: 256 RLVKKF-----FASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 RLVK+F F K R +P F+ I K+++P+ +++ N R+RSAK Sbjct: 233 RLVKRFMKNGLFEGEPEKDFFGRFEVP-------FKLIG-KMIIPSNQEIKINNRARSAK 284 Query: 311 LR 312 LR Sbjct: 285 LR 286 >gi|171920499|ref|ZP_02931791.1| S-adenosyl-methyltransferase MraW [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|171902972|gb|EDT49261.1| S-adenosyl-methyltransferase MraW [Ureaplasma parvum serovar 1 str. ATCC 27813] Length = 308 Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 107/309 (34%), Positives = 161/309 (52%), Gaps = 18/309 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI---ALDRDPFAVSCGQE 76 H+ VLL + I LLN P + +D TFG GG+S+ K S LD+D A++ Sbjct: 6 HITVLLNETIELLNIKPDGIYVDCTFGRGGHSQLILKKLSKKGKLICLDQDQEAINFANN 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ + + F L+ + VDG +FDLG+SS Q+D RGFS+ K+ L Sbjct: 66 LFKN-NTNVIVIKTNFKNLKSALGAHKIFYVDGFIFDLGLSSPQLDDPKRGFSYHKNAWL 124 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S ++A +VN + L I GE K IA AIVK R TT +L Sbjct: 125 DMRMDQSQNLNAHYIVNNYSFAKLVSIFKRYGEIKYPKIIADAIVKERSIKEINTTLELV 184 Query: 193 SLIQKTVYFSKNNRI----HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +I+K +S ++ HPA FQA+RI VN+E+ L + A L G++ ++ Sbjct: 185 EIIKK---YSPKKKLFEKKHPARLFFQAIRIEVNDELNILEKAFNDAISMLNPLGVVAII 241 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLED++VKK F + + + + +P N + + + +K++ TQE + N RSRS Sbjct: 242 SFHSLEDKIVKKVFNNYAK--IKLPKEVPINNYVNKYSLLNQKIMPSTQE-LNDNNRSRS 298 Query: 309 AKLRAGMRT 317 + LR +R Sbjct: 299 SILRGLIRN 307 >gi|163787483|ref|ZP_02181930.1| S-adenosyl-methyltransferase MraW [Flavobacteriales bacterium ALC-1] gi|159877371|gb|EDP71428.1| S-adenosyl-methyltransferase MraW [Flavobacteriales bacterium ALC-1] Length = 298 Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 107/300 (35%), Positives = 163/300 (54%), Gaps = 17/300 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H VLL + + L+ P V +D TFG GG+SR ++G N + A D+D A++ Sbjct: 4 HNAVLLIETVDGLDIKPNGVYVDVTFGGGGHSREILSRLGPNGKLYAFDQDKDALAN--- 60 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 T+ D E+F L F ++ ++ GV DGV+ D GVSS Q D +RGFS + L Sbjct: 61 TIDD--ERFVLINENFRYIKRFLRFYGVKEVDGVLADFGVSSHQFDVAERGFSTRFEADL 118 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ S ISA VVN + + + +L GE +Q+ +A IV R +T++ L Sbjct: 119 DMRMNQDSKISAYQVVNNYSEEQIKNVLLQYGELRQSPAMARVIVTERAREEIKTSEQLK 178 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +++ + K N++ + +QA+RI VN EIE L + L + LK GG L +S+HS Sbjct: 179 KVLKPFLNHKKENKV--LAQIYQAIRIEVNQEIEVLKELLLQTPEILKEGGRLSFISYHS 236 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDRLVK+F + + R M + P K+++P++ ++ N R+RSAKLR Sbjct: 237 LEDRLVKRFIRNGLFEGEPERDMFGNFEVPL---RKVGKLIIPSRLEIKINNRARSAKLR 293 >gi|224419084|ref|ZP_03657090.1| S-adenosyl-methyltransferase MraW [Helicobacter canadensis MIT 98-5491] gi|253828022|ref|ZP_04870907.1| S-adenosyl-methyltransferase [Helicobacter canadensis MIT 98-5491] gi|313142594|ref|ZP_07804787.1| S-adenosyl-methyltransferase MraW [Helicobacter canadensis MIT 98-5491] gi|253511428|gb|EES90087.1| S-adenosyl-methyltransferase [Helicobacter canadensis MIT 98-5491] gi|313131625|gb|EFR49242.1| S-adenosyl-methyltransferase MraW [Helicobacter canadensis MIT 98-5491] Length = 311 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 102/308 (33%), Positives = 169/308 (54%), Gaps = 20/308 (6%) Query: 20 HVPVLLEKVIALLNPA----PGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSC 73 H+ VL ++V+ N G +++D T G GG+S + + VI +D+D A++ Sbjct: 5 HISVLKQEVLEAFNTEIINQKGGILIDCTLGFGGHSLALLEKYPKLKVIGIDQDDEAIAL 64 Query: 74 GQETMRDYKEQFSLFQATFSQL--QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++ + + ++FS+ FS + Q + + G++ D+GVSSMQ D +RGF F S Sbjct: 65 AKKRLEPFCDRFSIEYGCFSGVLKQILQRENNIVGILADIGVSSMQFDSKERGFCFD-SE 123 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM S +A D+VN + +L RI GE ++ ++A+ IV+ R+ + + Sbjct: 124 FLDMRMDQSQNFTAKDIVNSYPLTELERIFRDFGEIREYKKLAYCIVELRKKEKITSAKM 183 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE-KALKAGGLLIVVS 249 LS I K K+ +IHPAT +FQALRI VNNE+ EL L+ + + ++ L ++S Sbjct: 184 LSQFIAKHF---KHPKIHPATLAFQALRIEVNNELGELESMLKIFDSQTMQDCSRLCLIS 240 Query: 250 FHSLEDRLVKKFFASRSGKVM----AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 FHSLEDR++K F + A++ N +S+ KK ++P +E++ N R Sbjct: 241 FHSLEDRIIKNKFKQWENPCICPPQALKCECGRNHQKG--RSLYKKPIIPKEEEIKDNPR 298 Query: 306 SRSAKLRA 313 +RS+K+R Sbjct: 299 ARSSKMRV 306 >gi|260438648|ref|ZP_05792464.1| S-adenosyl-methyltransferase MraW [Butyrivibrio crossotus DSM 2876] gi|292809242|gb|EFF68447.1| S-adenosyl-methyltransferase MraW [Butyrivibrio crossotus DSM 2876] Length = 346 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 106/313 (33%), Positives = 165/313 (52%), Gaps = 29/313 (9%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPFAVSCG 74 G H+P+++E+++ +L PG V LDAT G GG+S K ++ +LD DP + Sbjct: 49 GMHIPIMVEEILDVLKVQPGDVGLDATLGYGGHSGKILEKLKGSGHLYSLDIDPIEIVRT 108 Query: 75 QETMRDY---KEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 ++ +RD ++ F++ + F + + G D ++ DLGVSSMQID +RGFS++ Sbjct: 109 EKRLRDKGFSEDVFTVIRTNFKNIDEVSGTAGKFDFLMADLGVSSMQIDNPERGFSYKNE 168 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTT 188 GPLD+R+ S G AS+ + + + T +L +E A IA + R+ TT Sbjct: 169 GPLDLRLDPSKGEPASERLKKLTKDEFTGMLIENSDEPYAKEIATEVFNEFRKKKEINTT 228 Query: 189 QDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 DL I+K + F K+ + R+FQALRI VN+E E L + L+ +K GG Sbjct: 229 TDLYKAIEKALSFIPEKERKDAVKKSSQRTFQALRIDVNSEFEVLEEFLQKLPDVMKEGG 288 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 + +++FHS EDRLVK++F M R V I+ V+ P+ + A N Sbjct: 289 RIAILTFHSGEDRLVKQYFK------MYKRD--------GVLSEIS-DVIRPSAAECARN 333 Query: 304 RRSRSAKLRAGMR 316 R+RS KLR +R Sbjct: 334 GRARSTKLRWAVR 346 >gi|327540391|gb|EGF26977.1| S-adenosyl-methyltransferase MraW [Rhodopirellula baltica WH47] Length = 325 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 105/314 (33%), Positives = 163/314 (51%), Gaps = 33/314 (10%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---------VIALDRDPF 69 +HV V+ +++ + I+D T+G GG++R ++ ++ VIA+DRDP Sbjct: 27 EHVSVMPNEIVQWVREINPTTIIDGTYGGGGHTRLLAEVLADAGADSDTPRVIAIDRDPA 86 Query: 70 AVSCG-QETMRDYKEQFSLFQATFS---QLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125 V Q++ + LF ++ + D + D +V DLG+SS Q+ +RGF Sbjct: 87 VVRRDEQKSWIKDDPRIELFLGSYESSPKALDALDLTHADALVLDLGLSSDQLADRNRGF 146 Query: 126 SFQ-KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQS 182 +F LD+R +G+ A + Q + K++ + GEE+ + RIA I R R+ Sbjct: 147 TFTIDDAELDLRFDPENGVPAYRWLQQHSEKEIADAIYQFGEERFSRRIAKQIFLRARER 206 Query: 183 APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 P +L + ++ V S+N+ IHPATR+FQALRI VN+E+ L + L+SA + G Sbjct: 207 NPVTKVGELVEICRRCVPRSRNHDIHPATRTFQALRIAVNDELGGLTRTLQSAPDWIAPG 266 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G + V+SFHSLEDR+VK F ++ +TKK + PT E+V Sbjct: 267 GRVAVISFHSLEDRIVKNAFREDHR-----------------WEILTKKPLRPTDEEVQA 309 Query: 303 NRRSRSAKLRAGMR 316 N RSRSAKLR R Sbjct: 310 NPRSRSAKLRVAKR 323 >gi|188994484|ref|YP_001928736.1| S-adenosyl-methyltransferase MraW [Porphyromonas gingivalis ATCC 33277] gi|262824880|sp|B2RIE4|RSMH_PORG3 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|188594164|dbj|BAG33139.1| putative S-adenosyl-methyltransferase MraW [Porphyromonas gingivalis ATCC 33277] Length = 311 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 107/303 (35%), Positives = 165/303 (54%), Gaps = 17/303 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+PV+L + + L P +D TFG GG+SR+ + S+ + D+D A +C + Sbjct: 11 HIPVMLGECLEGLRIDPDGCYVDVTFGGGGHSRAIVEKLSSKGRLYGFDQD--ADAC-RN 67 Query: 77 TMRDYKEQFSLFQATFSQL---QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++D E+F+ + F L DY + GVDG++ DLGVSS D +RGFSF+ PL Sbjct: 68 VLQD--ERFTFVPSNFRYLANFMDYYGEDGVDGILADLGVSSHHFDEEERGFSFRSESPL 125 Query: 134 -DMRMSCSGISASD-VVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS--APFQTTQ 189 DMRM+ + ++N+ + L+ + GE KQA R+A +IV R+S QT Sbjct: 126 LDMRMNARAGRNAAAILNEYDASSLSALFYHYGELKQARRLAASIVHYRESLSGGLQTVG 185 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L ++ + S FQALRI VN+E+ L Q L +A L++GG L+V++ Sbjct: 186 QLLEAVRGLI--SPREEKKQLACIFQALRIEVNDELGALQQMLEAALGCLRSGGRLVVMT 243 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 +HSLEDR+VK F + K + A + +Q IT+K + + ++++ N RSRSA Sbjct: 244 YHSLEDRMVKNFLRYGTVKAPDEDSLRLYGAPQSPWQQITRKPLTASTKELSDNPRSRSA 303 Query: 310 KLR 312 KLR Sbjct: 304 KLR 306 >gi|237750751|ref|ZP_04581231.1| S-adenosyl-methyltransferase MraW [Helicobacter bilis ATCC 43879] gi|229373841|gb|EEO24232.1| S-adenosyl-methyltransferase MraW [Helicobacter bilis ATCC 43879] Length = 374 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 109/322 (33%), Positives = 167/322 (51%), Gaps = 36/322 (11%) Query: 20 HVPVLLEKVIALLNP----------------APGKVILDATFGAGGYSRSFCKMGSN--V 61 H+PVLLE ++ + +V++D T G GG SR+ + SN + Sbjct: 57 HIPVLLEHMLDTFDRIFLSTHSHYIAKKSLIKNKEVLIDCTLGFGGMSRALLERYSNLHI 116 Query: 62 IALDRDPFAVSCGQETMRDYKEQFSLFQATFS----QLQDYVPDKG--VDGVVFDLGVSS 115 I +DRD +A+ +E+M +K++F F+ Q+ + G + G++ D+GVSS Sbjct: 117 IGIDRDSYALEYNRESMAKFKDRFQTRHGDFATLLPQIIKEIEANGDHLCGILADIGVSS 176 Query: 116 MQIDCGDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAH 174 Q+D DRGFSF S LDMRM + A +VN N +L I GE ++ ++ + Sbjct: 177 YQLDSIDRGFSFH-SNKLDMRMDRTQSLDADMIVNTYNKYELEEIFKNYGEIREYKKLVN 235 Query: 175 AIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234 IV+ RQ + T D SL + +IHPAT +QALRI VN+E+ +L L S Sbjct: 236 LIVQERQRG--RITAD--SLQNIALKLHSKAKIHPATLIYQALRIAVNDELGQLKSLLHS 291 Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVR---HMIPSNAHPAVFQSITKK 291 + + L V+SFHSLEDR++K+ F + + + N H F S+ KK Sbjct: 292 CQNLHEV--LFCVISFHSLEDRMIKESFKQFAKSCICDTTSFKCVCGNNHAKGF-SLYKK 348 Query: 292 VVVPTQEDVAFNRRSRSAKLRA 313 ++ +++A N+RSRSAKLRA Sbjct: 349 PLIADSKEIAQNKRSRSAKLRA 370 >gi|332299370|ref|YP_004441291.1| Ribosomal RNA small subunit methyltransferase H [Porphyromonas asaccharolytica DSM 20707] gi|332176433|gb|AEE12123.1| Ribosomal RNA small subunit methyltransferase H [Porphyromonas asaccharolytica DSM 20707] Length = 338 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 115/323 (35%), Positives = 170/323 (52%), Gaps = 30/323 (9%) Query: 8 TMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIAL 64 ++S+ ++HT VL E + LL P + +D T G GG+SR+ + I L Sbjct: 28 SLSAKLYHTA-----VLCEDSLDLLVTTPTGLYVDVTMGGGGHSRALLERLAPEGRCIGL 82 Query: 65 DRDPFAVSCGQETMRDYKEQFSLFQAT----FSQLQDYVPDKG-VDGVVFDLGVSSMQID 119 D+DP AV R + F AT Q DY G VDG++ DLGVSS D Sbjct: 83 DQDPDAVVNAPTDSRYH------FVATNFRYLGQWLDYWGLTGQVDGILADLGVSSHHFD 136 Query: 120 CGDRGFSFQKSGPL-DMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177 +RGFSF+ + DMRM S SG++A D++ + + L IL GE A RIA +V Sbjct: 137 SEERGFSFRYEEAMPDMRMNSRSGVTARDILLSYSEEQLADILYYYGELHDARRIAALLV 196 Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 R + + T L ++ + + +R FQALRI VN+E+ L Q L + + Sbjct: 197 SHR-AVGYPTIAALMEVLTPVLPKGGPQLRNKLSRIFQALRIEVNDELGALRQLLSDSVR 255 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFA----SRSGKVMAVRHMIPSNAHPAVFQSITKKVV 293 LK GG + ++S+HSLEDR+VK+FF + + +A +P +A PA + +TKK + Sbjct: 256 LLKPGGRIAIISYHSLEDRMVKEFFRLGCFEQPSEALA---GMPLSA-PAPLRVVTKKAI 311 Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316 P+ +++A N R+RSAKLR R Sbjct: 312 TPSADEIADNNRARSAKLRVAER 334 >gi|196231370|ref|ZP_03130229.1| S-adenosyl-methyltransferase MraW [Chthoniobacter flavus Ellin428] gi|196224706|gb|EDY19217.1| S-adenosyl-methyltransferase MraW [Chthoniobacter flavus Ellin428] Length = 351 Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 103/316 (32%), Positives = 162/316 (51%), Gaps = 30/316 (9%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCG 74 G H P+++ +++ +L P PG+ +DAT G GG+SR + G +I LD DP + Sbjct: 51 GMHRPIMVSEIMEILAPKPGEFAVDATLGYGGHSREILQRITPGGRLIGLDVDPLELPKT 110 Query: 75 QETMRDY---KEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + +R + F+ + ++ L + +G D ++ DLG+SSMQID RGF+F+ Sbjct: 111 EARLRALGFGPDVFTAQRVNYAGLPALIAREAPEGADIILADLGLSSMQIDNPSRGFTFK 170 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 GPLD+RM+ G AS ++ N L ++L +E A+ + AI+ + P T Sbjct: 171 VEGPLDLRMNPERGQPASALLATINAAKLEQLLTENADEPNAALLTRAILDAQARTPITT 230 Query: 188 TQDLSSLIQKTVYFSKNNRIHPAT---RSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 T L+++I+ + + RI P R FQALRI VN+E L LR + L+ GG Sbjct: 231 TTALATVIRTAL--ASLPRIEPNDTIRRVFQALRIAVNDEFSALDTFLRHLPQCLRPGGR 288 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 + +++FHS EDR VK H + ++ I + V+ P E++ N Sbjct: 289 IAILTFHSGEDRRVK--------------HAFKTGLQEGLYSEIARDVLRPGAEELRANP 334 Query: 305 RSRSAKLRAGM-RTVE 319 RS SAKLR + R VE Sbjct: 335 RSASAKLRWAVGRKVE 350 >gi|260063719|ref|YP_003196799.1| S-adenosyl-methyltransferase MraW [Robiginitalea biformata HTCC2501] gi|88783164|gb|EAR14337.1| S-adenosyl-methyltransferase MraW [Robiginitalea biformata HTCC2501] Length = 312 Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 110/305 (36%), Positives = 160/305 (52%), Gaps = 17/305 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMG--SNVIALDRDPFAVSCGQE 76 H PVLL + + L +D TFG GG+SR ++G +IA D+D A++ E Sbjct: 7 HKPVLLRESVDGLAIREDGTYVDVTFGGGGHSREILGRLGPKGRLIAFDQDEEALANKPE 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 E+F L F ++ ++ G VDG++ D GVSS Q D +RGFS + L Sbjct: 67 -----DERFLLIGENFRYIRQFLKFYGILKVDGILADFGVSSHQFDRAERGFSTRFDAGL 121 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRMS I+A DVVN + + L +L GE + A +IA +V+ R A QTT L+ Sbjct: 122 DMRMSRRAEITARDVVNTYSFEKLRSVLQRYGELRSAGKIAGELVRARDKASIQTTYGLN 181 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 + + K N++ R +QA+R+ VN E+ L L+ L GG L ++S+HS Sbjct: 182 EAVSAFLPRGKENKV--LARIYQAIRMEVNQELAALEAFLQQTAALLPTGGRLSLISYHS 239 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDRLVK+F R+GK A F+ + K++VP +++ N R+RSAKLR Sbjct: 240 LEDRLVKRFI--RTGKFEGEVDKDFYGNPLAPFRKVG-KLIVPGDDELEENPRARSAKLR 296 Query: 313 AGMRT 317 RT Sbjct: 297 IAERT 301 >gi|325989697|ref|YP_004249396.1| S-adenosyl-L-methionine-dependent methyltransferas [Mycoplasma suis KI3806] gi|323574782|emb|CBZ40442.1| S-adenosyl-L-methionine-dependent methyltransferas [Mycoplasma suis] Length = 304 Score = 150 bits (378), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 89/309 (28%), Positives = 156/309 (50%), Gaps = 15/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76 H+PV+L +V + + +D TFG GG+S+ + +G N +I +D DP + E Sbjct: 2 HIPVMLREVCENWLSSANGIYIDCTFGCGGHSKELLRSLGENSRLIGMDVDPKVIPYANE 61 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG-P 132 + +FS ++ +++Y + DG++FDLG+S++Q+ +R FS+ S Sbjct: 62 -LSSQDSRFSFLNVNYTSMRNYWKTNSLPPADGILFDLGLSTLQLKDEERTFSYNSSSST 120 Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 L++R G S +++N K L I G +A R+ I++ R++ P + L Sbjct: 121 LELRFGLEGKSVYEILNNYPPKKLNWIFKKYGNISEAERLTQTIIQFRKNTPITEVKQLK 180 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+++ +K +P FQ+LRI NNE+ + LR A + LK G L++++FHS Sbjct: 181 EIIERSKILNKRKNKNPMKLIFQSLRIECNNELNCFKEALRQAAELLKVNGKLLIITFHS 240 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAH--PAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 LED +V ++ S + IP P F + ++P++ ++ N SRSAK Sbjct: 241 LEDEIVLEWKRQNSSYI-----KIPEMGEIIPPRFTLKSNSPLLPSRAEIETNWASRSAK 295 Query: 311 LRAGMRTVE 319 L +T E Sbjct: 296 LWVFTKTRE 304 >gi|219128094|ref|XP_002184257.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217404488|gb|EEC44435.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 290 Score = 150 bits (378), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 109/298 (36%), Positives = 152/298 (51%), Gaps = 36/298 (12%) Query: 39 VILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE-TMRDYKEQFSLFQATFSQ 94 + +D T G GG+S + + G V D DP A++ E T D L Sbjct: 1 LFIDGTLGGGGHSAALLQRLQPGDVVFGCDVDPAALATASERTGNDATTNLVLPPTC--- 57 Query: 95 LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC----SGISASDVVNQ 150 GVDG++ DLGVSS QID +RGF+F K GPLDMRM +G++A+D+ N+ Sbjct: 58 -------PGVDGILLDLGVSSHQIDTAERGFAFMKDGPLDMRMGQQNLHTGLTAADICNE 110 Query: 151 ANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV-YFSKN----N 205 + +L RIL G+E +A IAH+IV QS P QTT DL + V F++ Sbjct: 111 FDEVELRRILKTYGDEPRAKSIAHSIV---QSRPLQTTNDLVEAVSAVVPQFARKGKRLG 167 Query: 206 RIHPATRSFQALRIFVNNEIEELAQGLRS-AEKALKAGGLLIVVSFHSLEDRLVKKFFAS 264 R+ R FQ+LRI VN E + L Q L A L+ GG L+V+S+ S+EDR K+ Sbjct: 168 RMSTLARVFQSLRIVVNQEDKVLEQALVDMAPTLLRPGGRLVVLSYQSMEDRSTKRVM-- 225 Query: 265 RSGKVMAVRHMIPSNAH------PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 R G H + + P F ++ K+ T+E++A N R+RSA LR R Sbjct: 226 RDGMTRKKTHSDEKDMYGNYCGAPRPFLALGKRQKA-TEEEIAGNPRARSATLRVAER 282 >gi|291519055|emb|CBK74276.1| S-adenosyl-methyltransferase MraW [Butyrivibrio fibrisolvens 16/4] Length = 289 Score = 150 bits (378), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 87/254 (34%), Positives = 142/254 (55%), Gaps = 12/254 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQE 76 +H VLL + + LN P + +D T G GG+S ++ D+D A+ E Sbjct: 4 NHYSVLLYETVDNLNIKPDGIYVDGTLGGGGHSFEIASRLTTGHLYGFDQDTDALKAAGE 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQ-KSGP 132 + Y ++ + + + +++ + + GV DG++ DLGVSS Q+D DRGF+++ P Sbjct: 64 RLACYGDKVTRIHSNYEFMKERLAELGVTKVDGIMLDLGVSSFQLDEADRGFTYRVDDAP 123 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM ++A+D+VN + +DLTR+L GEEK + +I I+K R+ AP T L Sbjct: 124 LDMRMDKDNPMTAADIVNTYSAEDLTRVLFTYGEEKFSKQIVKNIIKEREKAPILTAGQL 183 Query: 192 SSLIQKTVYFSKNNRI---HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 + +I +++ K ++ HP+ R++QALRI +N E+ L + L GG L ++ Sbjct: 184 NKIIAESI--PKKAQVGQGHPSKRTYQALRIELNRELTVLEDHIDDMIDLLNPGGRLCII 241 Query: 249 SFHSLEDRLVKKFF 262 +FHSLEDR+ K F Sbjct: 242 TFHSLEDRITKVAF 255 >gi|193216628|ref|YP_001999870.1| S-adenosyl-methyltransferase [Mycoplasma arthritidis 158L3-1] gi|263456519|sp|B3PMB4|RSMH_MYCA5 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|193001951|gb|ACF07166.1| S-adenosyl-methyltransferase [Mycoplasma arthritidis 158L3-1] Length = 286 Score = 150 bits (378), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 100/280 (35%), Positives = 154/280 (55%), Gaps = 18/280 (6%) Query: 41 LDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDY 98 +D T G G+S K + +I D+D A+ + ++ F+L Q F L+ Sbjct: 10 VDLTLGRAGHSLEILKKLINGRLICFDKDNEAIKESYKKLQKISPNFTLIQNDFRFLKAE 69 Query: 99 VPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVK 154 + G VDG++ DLGVSS QID RGFS+ + GPLDMRM+ + SA D+++ + Sbjct: 70 LEKLGINEVDGILADLGVSSPQIDDPTRGFSYSQEGPLDMRMNQQNSFSAKDIIDNFDES 129 Query: 155 DLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSF 214 +LT+IL + K A+ +A AIV +R P ++T +L +I+ + +PA F Sbjct: 130 ELTKILIKNADVKLANLVAKAIVAKR---PIKSTSELVEIIKNALPAKIVREKNPAKAVF 186 Query: 215 QALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH 274 QALRI VN+E+ L L A + LK G +++++FHS ED +VK FF ++ + Sbjct: 187 QALRIEVNDELGALTAMLADATQLLKKDGKILIITFHSKEDSIVKNFFQKQN-------Y 239 Query: 275 MIPS-NAHPAVFQSITK-KVVVPTQEDVAFNRRSRSAKLR 312 + P N P Q I K K++ P++++ N RSRSAKLR Sbjct: 240 VDPRLNKLPINIQKIWKQKIIFPSEDEKLQNNRSRSAKLR 279 >gi|260587648|ref|ZP_05853561.1| S-adenosyl-methyltransferase MraW [Blautia hansenii DSM 20583] gi|260541913|gb|EEX22482.1| S-adenosyl-methyltransferase MraW [Blautia hansenii DSM 20583] Length = 349 Score = 150 bits (378), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 107/315 (33%), Positives = 164/315 (52%), Gaps = 32/315 (10%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF--CKMGS-NVIALDRDPFAVSCG 74 G H+ + +++++ L PG++ LDAT G GG+S C G ++ ALD DP + Sbjct: 50 GMHISICVQEILDFLQIQPGQIGLDATLGYGGHSSKMLGCLEGKGHLYALDVDPIEIKKT 109 Query: 75 QETMR--DYKEQ-FSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E + DYKE ++ Q F+ + + G D V+ DLGVSSMQID +RGF+++ Sbjct: 110 KERLEKMDYKEDILTIKQMNFADVDQLKEEAGGFDFVLADLGVSSMQIDNPERGFTYKFE 169 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTT 188 GPLD+R++ GISA++ + + +L +L +E A I++ I+ R+ P TT Sbjct: 170 GPLDLRLNPEKGISAAERLKDISQPELEGMLIENSDEPYAKEISNTIISEIRRGNPITTT 229 Query: 189 QDLSSLIQKT-VYFSKNNRIH----PATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 L ++K V + R R+FQALRI VN+E E L + L G Sbjct: 230 TQLQKAVEKALVRIPEKERKEMVKKSCARTFQALRIDVNSEFEVLEAFMEKLPTVLNKGA 289 Query: 244 LLIVVSFHSLEDRLVKKFFAS--RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 + +++FHS EDRLVKK F R G V+ I+K V+ P+ E+ A Sbjct: 290 RVAILTFHSGEDRLVKKAFQRFYREG----------------VYSEISKDVIRPSAEECA 333 Query: 302 FNRRSRSAKLRAGMR 316 N RSRS K+R ++ Sbjct: 334 RNSRSRSTKMRWAIK 348 >gi|238916664|ref|YP_002930181.1| S-adenosyl-methyltransferase [Eubacterium eligens ATCC 27750] gi|263447037|sp|C4Z530|RSMH_EUBE2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|238872024|gb|ACR71734.1| S-adenosyl-methyltransferase [Eubacterium eligens ATCC 27750] Length = 315 Score = 149 bits (377), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 97/303 (32%), Positives = 165/303 (54%), Gaps = 9/303 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VLLE+ I LN P + +D T G G+S K G +I +D+D A++ E Sbjct: 9 HKSVLLEETIDNLNIKPDGIYVDGTLGGAGHSYQIAKRLTGGGRLIGIDQDADAIAAATE 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +++++E+ ++ + + + + + G VDG++ D+GVSS Q+D RGF++ L Sbjct: 69 RLKEFEERVTIVRNNYCNMDKVLDELGIDKVDGILLDIGVSSYQLDTASRGFTYNVDTAL 128 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM ++A D+VN + +L RI+ GE++ A IA IV R+ P +TT +L+ Sbjct: 129 DMRMDQRQEMTAKDLVNTYSEMELFRIIRDYGEDRFAKNIAKHIVAARKEKPIETTFELN 188 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ ++ + HP+ R++QA+RI +N E++ L + L G L +++FH Sbjct: 189 EIIKASIPAKVRATGGHPSKRTYQAIRIELNRELDVLENSIDMMIDRLNPQGRLCIITFH 248 Query: 252 SLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK F + + + + IT+K +VP E++ N+RS+S+K Sbjct: 249 SLEDRIVKARFRNNENPCTCPPDFPVCVCGKKSKGKVITRKPIVPGDEELNENQRSKSSK 308 Query: 311 LRA 313 LR Sbjct: 309 LRV 311 >gi|297807119|ref|XP_002871443.1| mraW methylase family protein [Arabidopsis lyrata subsp. lyrata] gi|297317280|gb|EFH47702.1| mraW methylase family protein [Arabidopsis lyrata subsp. lyrata] Length = 434 Score = 149 bits (377), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 110/335 (32%), Positives = 164/335 (48%), Gaps = 42/335 (12%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCGQ- 75 HVPV+L +V+ + + + +D T GA G+S S + S + + +D DP A G Sbjct: 95 HVPVMLGEVLDIFSSVRLRSFVDCTLGAAGHSSSIIQSHSELKHFVGMDVDPVARKLGHF 154 Query: 76 -------ETMRD--YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126 T++ + F ++ + Q + D GVDG++ DLG+SSMQ++ RGFS Sbjct: 155 HIDSLMHPTLKASIVLKNFKYIKSVVADTQPELLDVGVDGILMDLGMSSMQVNNPQRGFS 214 Query: 127 FQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 + GPLDMRM ++A D+VN +L R+L GEE + IVK R + Sbjct: 215 VLQEGPLDMRMDPQATLTAEDIVNSWPESELGRVLRDYGEESNWHLLQTRIVKARLNGGL 274 Query: 186 QTTQDLSSLIQKTVYFSKNNR---IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 +T +L LI+ + R I ATR FQ LRI VN+E++ L L S+ L G Sbjct: 275 HSTGELVDLIRGMSPAGRGGRQGWIKTATRVFQGLRIAVNDELKTLQNSLYSSFDVLGPG 334 Query: 243 GLLIVVSFHSLEDRLVKKFF----------ASRSGKVMAVRHMIPSNAHPAVFQS----- 287 G L V+SFHSLEDR+VK+ F + G + I + + Sbjct: 335 GRLAVISFHSLEDRVVKQTFLNILGFQREEINGEGNSVKPERQIEERVEKELKEKEAWIK 394 Query: 288 ----------ITKKVVVPTQEDVAFNRRSRSAKLR 312 +TK+ + P++E+ NRR+RSAKLR Sbjct: 395 QTVIGSKGVILTKRPITPSEEEERLNRRARSAKLR 429 >gi|89891774|ref|ZP_01203276.1| S-adenosyl-methyltransferase, MraW family [Flavobacteria bacterium BBFL7] gi|89515929|gb|EAS18594.1| S-adenosyl-methyltransferase, MraW family [Flavobacteria bacterium BBFL7] Length = 304 Score = 149 bits (376), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 112/309 (36%), Positives = 161/309 (52%), Gaps = 27/309 (8%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H PVLLE+ I L P V +D T+G GG+SR ++G + + A D+D A+ E Sbjct: 8 HSPVLLEESIDGLAINPSGVYVDVTYGGGGHSREILSRLGEDGKLFAFDQDLDALENVIE 67 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 R F+L F ++ ++ GV DG++ DLGVSS Q D DRGFS + L Sbjct: 68 DPR-----FTLINQNFRFMKRFLRMYGVKEVDGILADLGVSSHQFDEADRGFSTRFDARL 122 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ S + A VVN DL RI GE + A R+ AI+ +RQ +T L Sbjct: 123 DMRMNQESELDAVRVVNDYEEDDLNRIFKEYGELRIAPRLTRAIIAKRQEGLIETVAQLK 182 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 + V +++ + FQA+RI VN E++ L + L +++ LK GG L V+S+HS Sbjct: 183 EICAPFVPERIQHKM--LAQVFQAIRIEVNQEMDVLEEFLIQSKEILKTGGRLSVISYHS 240 Query: 253 LEDRLVKKF-----FASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 LEDR VK+F F K + R +P F+ + K+++PT + N R+R Sbjct: 241 LEDRPVKRFMRNGLFHGEPEKDVFGRASVP-------FKKVG-KLIIPTAAQIKENNRAR 292 Query: 308 SAKLRAGMR 316 SAKLR R Sbjct: 293 SAKLRIAQR 301 >gi|167043610|gb|ABZ08304.1| putative MraW methylase family protein [uncultured marine microorganism HF4000_APKG2M17] Length = 314 Score = 149 bits (376), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 103/305 (33%), Positives = 162/305 (53%), Gaps = 22/305 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H PVL VI L + +D T G GG++ + V+A+DRD A+ +E Sbjct: 8 HEPVLCNTVIQGLVSRTDGIYVDGTLGGGGHTAALLDALDSSGRVVAIDRDDDAI---RE 64 Query: 77 TMRDYKE-----QFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQ 128 T + + ++ + F+ ++ + + G V G + DLGVSS QID RGFS + Sbjct: 65 TSKRLSPDLASGRLTVLKGNFADVKLLLAEAGIAKVTGFLLDLGVSSHQIDEAGRGFSHR 124 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 K GPLDMRM S G+ A+++VNQ +V++L R+L GE+ R ++ P Sbjct: 125 KDGPLDMRMDRSQGVDANELVNQLDVEELARLLRRFGEQP---RSGRIARAIIRARPLSG 181 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T+DLS LI+ + +R FQA RI VN E++ L + L +E ++ G L V Sbjct: 182 TEDLSRLIRDLA--PRGQEAKTLSRVFQAFRIAVNEELDALDRVLLDSEAIMEVGARLAV 239 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +S+HSLEDR VK++ S + + R + + P ++ IT+K ++ + ++ N RSR Sbjct: 240 ISYHSLEDRRVKRYMRSGNLEGEVQRDVFGNQITP--WRMITRKPIMADEAEIRDNPRSR 297 Query: 308 SAKLR 312 SA+LR Sbjct: 298 SARLR 302 >gi|325973262|ref|YP_004250326.1| s-adenosyl-methyltransferase MraW [Mycoplasma suis str. Illinois] gi|323651864|gb|ADX97946.1| s-adenosyl-methyltransferase MraW [Mycoplasma suis str. Illinois] Length = 304 Score = 149 bits (376), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 88/309 (28%), Positives = 155/309 (50%), Gaps = 15/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQE 76 H+PV+L +V + + +D TFG GG+S+ F K + S +I +D DP + +E Sbjct: 2 HIPVMLREVCENWLSSANGIYIDCTFGCGGHSKEFLKSLGVNSRLIGMDVDPKVIPYAEE 61 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG-P 132 + +FS ++ +++Y + DG++FDLG+S++Q+ +R FS+ S Sbjct: 62 -LSSQDSRFSFLNVNYTSMRNYWKTNSLPPADGILFDLGLSTLQLKDEERTFSYNSSSST 120 Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 L++R G S +++N K L I G +A R+ I++ R++ P L Sbjct: 121 LELRFGLEGKSVYEILNNYPPKKLNWIFKKYGNISEAERLTQTIIQFRKNTPITEVNQLK 180 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+++ +K +P FQ+LRI NNE+ + LR A + LK G L++++F S Sbjct: 181 EIIERSKILNKRKNKNPMKLIFQSLRIECNNELNCFKEALRQAAELLKVNGKLLIITFQS 240 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAH--PAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 LED +V ++ S + IP P F + ++P++ ++ N SRSA+ Sbjct: 241 LEDEIVLEWKRQNSSYI-----KIPEMGEIIPPRFTLKSNSPLLPSRAEIETNWASRSAE 295 Query: 311 LRAGMRTVE 319 L +T E Sbjct: 296 LWVFTKTRE 304 >gi|256080680|ref|XP_002576606.1| S-adenosyl-methyltransferase mraW [Schistosoma mansoni] gi|238661881|emb|CAZ32843.1| S-adenosyl-methyltransferase mraW, putative [Schistosoma mansoni] Length = 260 Score = 149 bits (375), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 98/243 (40%), Positives = 128/243 (52%), Gaps = 48/243 (19%) Query: 102 KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILG 161 + VD ++ DLGVSS+Q+D RGF F+ + PLDMRM+ S NV Sbjct: 37 QSVDLILMDLGVSSLQLDIESRGFGFKHNAPLDMRMNQS----------PNVH------- 79 Query: 162 ILGEEKQASRIAHAIVKRRQS-APFQTTQDLSSLIQKTVYFSKNNR--IHPATRSFQALR 218 I GEE+ + RIA+AIV R QTT+ L+ LI V ++ R IHPATR FQALR Sbjct: 80 IYGEERLSKRIANAIVDYRNDVGSIQTTKQLADLIHSVVPMNREGRSSIHPATRVFQALR 139 Query: 219 IFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPS 278 IF+N+E+ EL GL AE LK GG L+V+SFHSLEDRLVK F S + +++ Sbjct: 140 IFINDELNELCIGLELAEFLLKPGGYLVVLSFHSLEDRLVKWSFHSDYKHLTLSKYLSQR 199 Query: 279 NAHPAVFQSITKK-------------------------VVVPTQEDVAFNRRSRSAKLRA 313 + H FQ I K+ + P+ ++ N RSRSAKLR Sbjct: 200 SRH---FQCINKRQEYEDDEISKESLGQIKSKWNCVIGPITPSDSEIDSNPRSRSAKLRI 256 Query: 314 GMR 316 R Sbjct: 257 AKR 259 >gi|149371570|ref|ZP_01890986.1| S-adenosyl-methyltransferase MraW [unidentified eubacterium SCB49] gi|149355197|gb|EDM43757.1| S-adenosyl-methyltransferase MraW [unidentified eubacterium SCB49] Length = 298 Score = 149 bits (375), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 107/305 (35%), Positives = 157/305 (51%), Gaps = 27/305 (8%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76 H PVLL + L P V +D TFG GG+SR K +G N +IA D+D A+ + Sbjct: 4 HNPVLLHPTVDGLAIKPDGVYVDVTFGGGGHSREILKRLGPNGKLIAFDQDKDALDNVID 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 R F L F L+ ++ K VDG++ D GVSS Q D +RGFS + L Sbjct: 64 DPR-----FVLVNENFRFLKRFLRFHGHKQVDGILADFGVSSHQFDVAERGFSTRFEAEL 118 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S SA DVVN L+ +L GE + + IA I ++R++ P +T+ L Sbjct: 119 DMRMDQGSAFSAYDVVNNYEESQLSSVLFQYGELRASKGIARVICEKRKNGPIKTSDQLK 178 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 + + + + ++I + +QA+RI VN E+E + + L+ + + L GG L V+S+HS Sbjct: 179 EAVARFLPKHREHKI--LAQIYQAIRIEVNQELEVIKEFLQQSIEVLPVGGRLSVISYHS 236 Query: 253 LEDRLVKKF-----FASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 LEDRLVK+F F K + R +P K ++P ++ N R+R Sbjct: 237 LEDRLVKRFMRNGMFEGEPEKDVFGRAEVPMKP--------VGKFIIPDAAEIKENNRAR 288 Query: 308 SAKLR 312 SAKLR Sbjct: 289 SAKLR 293 >gi|327404192|ref|YP_004345030.1| Ribosomal RNA small subunit methyltransferase H [Fluviicola taffensis DSM 16823] gi|327319700|gb|AEA44192.1| Ribosomal RNA small subunit methyltransferase H [Fluviicola taffensis DSM 16823] Length = 308 Score = 148 bits (374), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 105/305 (34%), Positives = 160/305 (52%), Gaps = 16/305 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMG--SNVIALDRDPFAVSCGQE 76 HVPV+L++ + L P + +D TFG GG+SR+ F K+ +I D+DP A + E Sbjct: 9 HVPVMLQECLDGLVINPDGIYVDVTFGGGGHSRAIFEKLSPKGKLIVFDQDPDARANAWE 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 F A F+ L++++ G VDG++ DLGVSS Q D RGFS + + L Sbjct: 69 A-----PNFHFVAANFAFLRNHLRVMGIPAVDGILADLGVSSHQFDDAKRGFSIRSNEVL 123 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +G +A+ +V + + L I GE + A +VK R + +TT +L Sbjct: 124 DMRMNQAGDFTAAKIVQTYDEEQLAAIFRKYGELDHPFKTAVELVKARNKSKIKTTGELM 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 + K+++ + FQALRI VN E++ L + L +LK G L+V+S+HS Sbjct: 184 EALMPVAPKFKDHKFF--AQVFQALRIEVNQEMDVLEKFLLQTADSLKPDGRLVVMSYHS 241 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDRLVK S + P F+ I +K ++P++E++ N R+RSAKLR Sbjct: 242 LEDRLVKNLMKRGSLDGSIEKDFFGKVLKP--FEEINRKPILPSEEEIQRNTRARSAKLR 299 Query: 313 AGMRT 317 R Sbjct: 300 IAKRV 304 >gi|331084062|ref|ZP_08333169.1| ribosomal RNA small subunit methyltransferase H 1 [Lachnospiraceae bacterium 6_1_63FAA] gi|330402424|gb|EGG81994.1| ribosomal RNA small subunit methyltransferase H 1 [Lachnospiraceae bacterium 6_1_63FAA] Length = 349 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 106/315 (33%), Positives = 163/315 (51%), Gaps = 32/315 (10%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF--CKMGS-NVIALDRDPFAVSCG 74 G H+ + +++++ L PG++ LDAT G GG+S C G ++ ALD DP + Sbjct: 50 GMHISICVQEILDFLQIQPGQIGLDATLGYGGHSSKMLGCLEGKGHLYALDVDPIEIKKT 109 Query: 75 QETMR--DYKEQ-FSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E + DYKE ++ Q F+ + + G D V+ DLGVSSMQID +RGF+++ Sbjct: 110 KERLEKMDYKEDILTIKQMNFADVDQLKEEAGGFDFVLADLGVSSMQIDNPERGFTYKFE 169 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTT 188 GPLD+R++ GIS ++ + + +L +L +E A I++ I+ R+ P TT Sbjct: 170 GPLDLRLNPEKGISVAERLKDISQPELEGMLIENSDEPYAKEISNTIISEIRRGNPITTT 229 Query: 189 QDLSSLIQKT-VYFSKNNRIH----PATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 L ++K V + R R+FQALRI VN+E E L + L G Sbjct: 230 TQLQKAVEKALVRIPEKERKEMVKKSCARTFQALRIDVNSEFEVLEAFMEKLPTVLNKGA 289 Query: 244 LLIVVSFHSLEDRLVKKFFAS--RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 + +++FHS EDRLVKK F R G V+ I+K V+ P+ E+ A Sbjct: 290 RVAILTFHSGEDRLVKKAFQRFYREG----------------VYSEISKDVIRPSAEECA 333 Query: 302 FNRRSRSAKLRAGMR 316 N RSRS K+R ++ Sbjct: 334 RNSRSRSTKMRWAIK 348 >gi|71893756|ref|YP_279202.1| putative S-adenosyl-methyltransferase [Mycoplasma hyopneumoniae J] gi|72080726|ref|YP_287784.1| S-adenosyl-methyltransferase [Mycoplasma hyopneumoniae 7448] gi|88909202|sp|Q4A7X8|RSMH_MYCH7 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|88909203|sp|Q4A9T0|RSMH_MYCHJ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|71851883|gb|AAZ44491.1| putative S-adenosyl-methyltransferase [Mycoplasma hyopneumoniae J] gi|71913850|gb|AAZ53761.1| S-adenosyl-methyltransferase [Mycoplasma hyopneumoniae 7448] Length = 296 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 112/309 (36%), Positives = 164/309 (53%), Gaps = 26/309 (8%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 HVPVLLE++I L P +D T G GG+S + + SN ++ D+D A+ + Sbjct: 2 HVPVLLEELILALEINPKGFYVDLTLGRGGHSLAILEKISNGKLVVFDKDQDALDQTRPK 61 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + YK+ + + FS+ Y+ + G VDG + DLGVSS QID +RGFS+ K G LD Sbjct: 62 LLAYKQNIEIIWSDFSRFDFYLENLGIQFVDGFIIDLGVSSPQIDDPERGFSYSKDGNLD 121 Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM S +SA V+N+ + L I G+ A IA AI+ R P +TT +L + Sbjct: 122 MRMDKSQKLSAFIVLNEYPYEKLVEIFFKYGQIPYAREIARAIINSR---PLKTTFELVN 178 Query: 194 LIQKTV---YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L++K + K N I FQA+RI VNNE++ L + L K LK G + +++F Sbjct: 179 LVKKVIPALVLVKKNFIK---NVFQAVRIEVNNELDSLQKLLEKLPKFLKQGSKVAIITF 235 Query: 251 HSLEDRLVKKFFAS--RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 HSLEDR+VKK F R K+ + +P + KV P ++ N R++S Sbjct: 236 HSLEDRIVKKAFLDLIRKDKLEFFQKGLP---------KFSMKVFRPKANELKSNPRAKS 286 Query: 309 AKLRAGMRT 317 AKLR ++ Sbjct: 287 AKLRLLLKN 295 >gi|291563183|emb|CBL41999.1| S-adenosyl-methyltransferase MraW [butyrate-producing bacterium SS3/4] Length = 360 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 102/318 (32%), Positives = 163/318 (51%), Gaps = 28/318 (8%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCG 74 G H+ + + +++ L+ PG LDAT G GG++ K ++ LD DP + Sbjct: 54 GMHISICVNEILDFLDIRPGMQGLDATLGYGGHTTEMLKKLEGQGHMYGLDVDPIEIVKT 113 Query: 75 QETMRDY---KEQFSLFQATFSQLQDYVPDKGV-DGVVFDLGVSSMQIDCGDRGFSFQKS 130 + +++ ++ ++ Q F+ + VP+ G+ D V+ DLGVSSMQID +RGF+++ Sbjct: 114 KARLKERGFDEDILTVKQMNFADIDKLVPETGLFDFVLADLGVSSMQIDNPERGFTYKAD 173 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTT 188 GPLD+R++ GISA++ + Q +++++ + +E A IA I KR R+ +TT Sbjct: 174 GPLDLRLNPEKGISAAERLKQMDMEEIAGMFVENSDEPYAEEIAREIAKRNRKRQYIETT 233 Query: 189 QDLSSLIQKTVYFSKNNRIHPAT-----RSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 L +I+ T+ F A R FQALRI VN E E L L L GG Sbjct: 234 TGLKEVIETTLSFIPEKERKEAVKKSCQRCFQALRIDVNQEFEVLESFLTKLPGILAPGG 293 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 +++FHS EDRLVK +F + GK ++ + V+ P+ E+ N Sbjct: 294 RAAILTFHSGEDRLVKYYF--KEGK------------KDGLYSDVANDVIRPSAEECQRN 339 Query: 304 RRSRSAKLRAGMRTVERS 321 R+RS K+R +R E S Sbjct: 340 PRARSTKMRWAIREGENS 357 >gi|332882630|ref|ZP_08450242.1| S-adenosyl-methyltransferase MraW [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332679430|gb|EGJ52415.1| S-adenosyl-methyltransferase MraW [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 304 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 111/308 (36%), Positives = 166/308 (53%), Gaps = 17/308 (5%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVS 72 +I H+PVLL++ I L PG +D TFG GG+SR ++G N + A D+D A++ Sbjct: 4 SISYHIPVLLKQSIDGLAIKPGGTYVDVTFGGGGHSREILNRLGENGRLYAFDQDADALN 63 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQK 129 T+ D +F+L F L+ Y+ GV DGV+ D GVSS Q D +RGFS + Sbjct: 64 ---NTIDD--PRFTLIHQNFKYLKQYLRFYGVSEVDGVLGDFGVSSHQFDVAERGFSTRF 118 Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 G LDMRM+ S ++A VVN+ + LTRI + GE K A IA AI+ RQ P + Sbjct: 119 EGALDMRMNQQSELTAQQVVNEYDEAALTRIFSLYGELKNARAIARAIIAFRQHTPIRLG 178 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L ++ + K N++ + +Q++RI VN E+E L L +K GG + ++ Sbjct: 179 STLQEAVRAFLPKFKENKV--LAQIYQSIRIEVNAEMEVLESFLLQLPAVVKVGGRISLI 236 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 S+HSLEDR VK+F R G++ F+ + +++P + ++ N R+RS Sbjct: 237 SYHSLEDRCVKRFI--RDGQMEGAPEKDWYGNVSVPFKKVG-GLILPDEAEITINNRARS 293 Query: 309 AKLRAGMR 316 AKLR R Sbjct: 294 AKLRIAER 301 >gi|124024411|ref|YP_001018718.1| S-adenosyl-methyltransferase MraW [Prochlorococcus marinus str. MIT 9303] gi|262824953|sp|A2CD93|RSMH_PROM3 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|123964697|gb|ABM79453.1| Predicted S-adenosylmethionine-dependent methyltransferase [Prochlorococcus marinus str. MIT 9303] Length = 310 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 102/285 (35%), Positives = 156/285 (54%), Gaps = 25/285 (8%) Query: 37 GKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQ 94 G +++DAT G GG+S + ++ I LD+DP A + E + + ++ + F Sbjct: 36 GGLMIDATLGGGGHSALLLERHPDLRLIGLDQDPTARAAAAERLALFGDRVKIVATNFV- 94 Query: 95 LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANV 153 D+ P + V+ DLGVSS Q+D RGFSF+ GPLDMRM+ G +A++++ + Sbjct: 95 --DFSPAEPAVVVMADLGVSSPQLDVAKRGFSFRLDGPLDMRMNPQVGETAAELIGRLEE 152 Query: 154 KDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPAT 211 +L ++ GEE+ + RIA I + P+ T L+ + ++ RIHPAT Sbjct: 153 TELADLIYAYGEERLSRRIARRIKHDLAEQGPYAGTAALAYAVAGCYPPKARRGRIHPAT 212 Query: 212 RSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMA 271 R+FQALRI VN+E++ L + L+ A L GGLL V+SFHSLEDR VK F R ++ Sbjct: 213 RTFQALRIAVNDELDALDRFLQKAPDWLVPGGLLAVISFHSLEDRRVKTAFL-RDQRL-- 269 Query: 272 VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 + +T+K +V ++ ++A N RSRSAK R R Sbjct: 270 --------------ERLTRKPLVASEMEIAANPRSRSAKCRFARR 300 >gi|34540382|ref|NP_904861.1| S-adenosyl-methyltransferase MraW [Porphyromonas gingivalis W83] gi|42559440|sp|Q7MWN0|RSMH_PORGI RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|34396695|gb|AAQ65760.1| S-adenosyl-methyltransferase MraW [Porphyromonas gingivalis W83] Length = 311 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 106/303 (34%), Positives = 163/303 (53%), Gaps = 17/303 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+PV+L + + L P +D TFG GG+SR+ + S+ + D+D A +C + Sbjct: 11 HIPVMLGECLEGLRIDPDGCYVDVTFGGGGHSRAIVEKLSSKGRLYGFDQD--ADAC-RN 67 Query: 77 TMRDYKEQFSLFQATFSQL---QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++D E+F+ + F L DY + GVDG++ DLGVSS D +RGFSF+ PL Sbjct: 68 ILQD--ERFTFVTSNFRYLANFMDYYGEDGVDGILADLGVSSHHFDEEERGFSFRSESPL 125 Query: 134 -DMRMSCSGISASD-VVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS--APFQTTQ 189 DMRM+ + ++N+ + L+ + GE KQA R A +IV R+S QT Sbjct: 126 LDMRMNARAGRNAAAILNEYDASSLSALFYHYGELKQARRFAASIVHYRESLSGGLQTVG 185 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L ++ + S FQALRI VN+E+ L Q L +A L++GG L+V++ Sbjct: 186 QLLEAVRGLI--SPREEKKQLACIFQALRIEVNDELGALQQMLEAALGCLRSGGRLVVMT 243 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 +HSLEDR+VK + K + A + +Q IT+K + + ++++ N RSRSA Sbjct: 244 YHSLEDRMVKNVLRYGTVKAPDEDSLRLYGAPQSPWQQITRKPLTASTKELSDNPRSRSA 303 Query: 310 KLR 312 KLR Sbjct: 304 KLR 306 >gi|226328337|ref|ZP_03803855.1| hypothetical protein PROPEN_02231 [Proteus penneri ATCC 35198] gi|225203070|gb|EEG85424.1| hypothetical protein PROPEN_02231 [Proteus penneri ATCC 35198] Length = 216 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 96/220 (43%), Positives = 127/220 (57%), Gaps = 12/220 (5%) Query: 108 VFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEE 166 + DLGVSS Q+D +RGFSF + GPLDMRM SG SA+ + A D+T +L GEE Sbjct: 1 MLDLGVSSPQLDDPERGFSFMRDGPLDMRMDPTSGQSAAQWLMTAEEDDITWVLKTFGEE 60 Query: 167 KQASRIAHAIVKRRQSA-PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEI 225 + A RIA AIV R ++ P T+ L+ LI + ++ HPATRSFQA+RI++N+E+ Sbjct: 61 RFAKRIARAIVARNKTEEPLTRTKQLADLISDASPVKERHK-HPATRSFQAIRIYINSEL 119 Query: 226 EELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP------SN 279 +E+ + L+ A L G L V+SFHSLEDRLVK+F S K V IP Sbjct: 120 DEIEKALKGAVSVLAPEGRLSVISFHSLEDRLVKRFIRDES-KGPVVPAGIPLTEAQIKE 178 Query: 280 AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319 A SI K + PT +V N R+RS+ LR R E Sbjct: 179 LGSARLSSIHK--MKPTGVEVEENPRARSSVLRVAQRIEE 216 >gi|225568788|ref|ZP_03777813.1| hypothetical protein CLOHYLEM_04867 [Clostridium hylemonae DSM 15053] gi|225162287|gb|EEG74906.1| hypothetical protein CLOHYLEM_04867 [Clostridium hylemonae DSM 15053] Length = 351 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 110/337 (32%), Positives = 171/337 (50%), Gaps = 43/337 (12%) Query: 3 SKSCKTMSSAIHH---TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF--CKM 57 K KT+S I G H+ + +++++ L PG+ LDAT G GG++ C Sbjct: 32 EKYAKTVSRVIQKGSTPAGMHISICVKEILEFLQIRPGQRGLDATLGYGGHTSKMLECLK 91 Query: 58 G-SNVIALDRDPFAVSCGQETMRDYK---------EQFSLFQATFSQLQDYVPDKGV-DG 106 G ++ ALD DP E++R K + ++ F+++ + G+ D Sbjct: 92 GQGHIYALDVDPI------ESVRTAKRLEKLGYGPDILTVKLQNFAKIDQVSREAGLFDF 145 Query: 107 VVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGE 165 V+ DLGVSSMQID DRGF+++ GPLD+RM+ GISA++ + ++L +L + Sbjct: 146 VLADLGVSSMQIDNPDRGFTYKAEGPLDLRMNPQKGISAAERLRDITKEELEGMLRENSD 205 Query: 166 EKQASRIAHAIVKR-RQSAPFQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRI 219 E + IA A+ ++ R+ +TT L I++ + F K + R+FQALRI Sbjct: 206 EPYGAEIAEAVTEKIRKGGEIETTTQLYKTIEEALAFLPEKDRKEAVKKSSQRTFQALRI 265 Query: 220 FVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSN 279 VN+E E L L L GG + +++FHS EDRLVKK F Sbjct: 266 DVNSEFEALYSFLEKLPDVLAPGGRVAILTFHSGEDRLVKKSFK--------------QF 311 Query: 280 AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 A V+ I+K+V+ P+QE+ N R+RS K+R +R Sbjct: 312 AKSGVYSEISKEVIRPSQEECRQNGRARSTKMRWAVR 348 >gi|295698684|ref|YP_003603339.1| S-adenosyl-methyltransferase MraW [Candidatus Riesia pediculicola USDA] gi|291157297|gb|ADD79742.1| S-adenosyl-methyltransferase MraW [Candidatus Riesia pediculicola USDA] Length = 310 Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 101/305 (33%), Positives = 171/305 (56%), Gaps = 18/305 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQ 75 +H+ VL E+VI LN +D TFG GG+S+ S + +IA+DRDP ++S + Sbjct: 5 NHIAVLPEEVIEGLNIKRDGTYIDCTFGQGGHSKLILSKLEKKGKLIAIDRDPKSISVAK 64 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + ++D +F + FS + + ++ V+G++ DLG+S +QI+ +RGFSF+++G Sbjct: 65 K-IKD--SRFIIKHGLFSDIYQFAKEEKIVGKVNGILLDLGISMIQINDENRGFSFRRNG 121 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ---T 187 LDMRM+ GI A + +A +++ IL GEEK++ +I+ +I ++ + + Sbjct: 122 SLDMRMNPEVGIPAKKWLEKAKREEIELILRRYGEEKKSRKISRSIFRQNHKKNLKKITS 181 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T+ L ++ + V + R HPATR+FQA+RI +NNE+EEL + L + L + V Sbjct: 182 TRQLVEIVSQIVSYK---RKHPATRTFQAIRIHINNELEELKEVLEKSLMVLAPLSRIAV 238 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +SFHSLE R++K F + + N + + +K + P + +V N +SR Sbjct: 239 ISFHSLESRIIKNFIKKYDSNSIINKKTFKKNIPEYIKLKLIEK-IKPKRSEVYKNPKSR 297 Query: 308 SAKLR 312 SA LR Sbjct: 298 SALLR 302 >gi|116072034|ref|ZP_01469302.1| methyltransferase [Synechococcus sp. BL107] gi|116065657|gb|EAU71415.1| methyltransferase [Synechococcus sp. BL107] Length = 285 Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 102/289 (35%), Positives = 151/289 (52%), Gaps = 26/289 (8%) Query: 34 PAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91 P V++DAT G GG+S + G ++I LD+DP A + E + + ++ + Sbjct: 13 PHQNGVLIDATLGGGGHSALLLERFPGFHLIGLDQDPTARAAAAERLAAFGDRVEILATN 72 Query: 92 FSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS--CSGISASDVVN 149 F+ Y P V V+ DLGVSS Q+D +RGFSF+ GPLDMRM+ +A+++++ Sbjct: 73 FAS---YTPPAPVLMVLADLGVSSPQLDVAERGFSFRLDGPLDMRMNPGSDAETAAELID 129 Query: 150 QANVKDLTRILGILGEEKQASRIAHAI-VKRRQSAPFQTTQDLSSLIQKTVYF-SKNNRI 207 + L ++ GEE+ + RIA I P++ T L+ + ++ RI Sbjct: 130 RLEENALADLIYGYGEERLSRRIARRIKADLAAQGPYEGTAALAYAVAGCYPPKARRGRI 189 Query: 208 HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSG 267 HPATR+FQALRI VN+E+ L + L A L+ GG++ V+SFHSLEDR VK F Sbjct: 190 HPATRTFQALRIAVNDELAVLDRLLDQAPDWLEPGGVMGVISFHSLEDRRVKTAFLQDE- 248 Query: 268 KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 + IT+K V T+++ N RSRSAK R R Sbjct: 249 ----------------RLERITRKPTVATEDEQDSNPRSRSAKWRLARR 281 >gi|266625237|ref|ZP_06118172.1| S-adenosyl-methyltransferase MraW [Clostridium hathewayi DSM 13479] gi|288862867|gb|EFC95165.1| S-adenosyl-methyltransferase MraW [Clostridium hathewayi DSM 13479] Length = 349 Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 104/313 (33%), Positives = 160/313 (51%), Gaps = 28/313 (8%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCG 74 G H+ + + +++ L PG+ LDAT G GG++R K ++ ALD DP ++ Sbjct: 50 GMHLSICVREILDFLQIKPGQKGLDATLGYGGHTREMLKCLQSQGHLYALDVDPIELAKT 109 Query: 75 QETMRDY---KEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E ++ E ++ Q F+ + + G D V+ DLGVSSMQID DRGFS++ Sbjct: 110 RERLQSQGFGPEILTIIQENFANIDRVAAEVGPFDFVLADLGVSSMQIDNPDRGFSYKTE 169 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTT 188 GPLD+R++ GI+A++ + ++L +L +E A IA A+V+ R+ P TT Sbjct: 170 GPLDLRLNPEKGITAAERLQTIEEEELRGMLLENADEPYAEEIARAVVQEIRRGNPIDTT 229 Query: 189 QDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 L +I+K + K R+FQALRI VN+E E L L L GG Sbjct: 230 TRLRQVIEKALSRVPAADRKEAVKKSCQRTFQALRIDVNSEFEVLYSFLEKLPDVLAPGG 289 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 + V++FHS EDRLVKK F + V+ I +V+ P+ E+ N Sbjct: 290 RVAVLTFHSGEDRLVKKSFKRLKKE--------------GVYSEIADEVIRPSAEECLRN 335 Query: 304 RRSRSAKLRAGMR 316 R+RS K+R ++ Sbjct: 336 GRARSTKMRWAVK 348 >gi|42559447|sp|Q7U3X9|RSMH_SYNPX RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 296 Score = 146 bits (369), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 108/302 (35%), Positives = 160/302 (52%), Gaps = 30/302 (9%) Query: 20 HVPVLLEKVI--ALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQ 75 HVPVL E V+ P +++DAT G GG+S + G +I LD+D A + Sbjct: 8 HVPVLSEAVMDAGRQMPRAEGLLIDATLGGGGHSALMLEQQPGLRLIGLDQDATARAAAA 67 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 E + + ++ ++ F++ Y P + V+ DLGVSS Q+D +RGFSF+ GPLDM Sbjct: 68 ERLAPFGDRVTIVATNFAE---YTPPEPALMVLADLGVSSPQLDVAERGFSFRLDGPLDM 124 Query: 136 RMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI-VKRRQSAPFQTTQDLS 192 RM+ G +A++++++ +L ++ GEE+ + RIA I + T L+ Sbjct: 125 RMNAVGDGATAAELIDRLEENELADLIYAYGEERLSRRIARRIKADLAVQGAYSGTAALA 184 Query: 193 SLIQKTVYFSKNN--RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 + Y + RIHPATR+FQALRI VN+E+ L + L+ A L+ GGL+ ++SF Sbjct: 185 YAV-AGCYPPQGTPRRIHPATRTFQALRIAVNDELGVLDRLLQQAPDWLEPGGLVGIISF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDR VK F + IT+K VV T+E+ N RSRSAK Sbjct: 244 HSLEDRRVKTAFLRDE-----------------RLERITRKPVVATEEEEEANPRSRSAK 286 Query: 311 LR 312 R Sbjct: 287 WR 288 >gi|171915286|ref|ZP_02930756.1| S-adenosyl-methyltransferase MraW [Verrucomicrobium spinosum DSM 4136] Length = 352 Score = 146 bits (368), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 102/317 (32%), Positives = 161/317 (50%), Gaps = 41/317 (12%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF----- 69 G H+P++L +++ +L P PG+ LD T G GG++ + + ++ LD+D Sbjct: 58 GQHIPIMLPEILEVLAPQPGERALDCTLGYGGHAEALLRAVQPDGCLMGLDQDAIEIEKT 117 Query: 70 -----AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRG 124 A+ + T+R + F+ + L + G D ++ DLGVSSMQID RG Sbjct: 118 GARLKALGFPEATLRVVRMNFAGLR---KALDEAAWSDGADVILADLGVSSMQIDNPARG 174 Query: 125 FSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 FSF+ GPLDMRM+ G+ A +++ + +V LT +L +E + +A A+ + Sbjct: 175 FSFKSDGPLDMRMNPLRGVPARELLRKISVPKLTALLEENADETNSILLAAALAGQD--- 231 Query: 184 PFQTTQDLSSLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 F T L++ +++ + + + R FQALRI VN+E L LR AL+ Sbjct: 232 -FAKTPTLAAAVKRALPRHLDEEEVTATTRRVFQALRIAVNDEFGALDSFLRVLPTALRP 290 Query: 242 GGLLIVVSFHSLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 GG + V++FHS EDR VKK F SR G F +I+ +V P+ E+ Sbjct: 291 GGRVAVLTFHSGEDRRVKKAFLAGSRDG----------------TFSAISDEVQRPSPEE 334 Query: 300 VAFNRRSRSAKLRAGMR 316 + N R+ SAKLR +R Sbjct: 335 IRLNTRAASAKLRWAVR 351 >gi|87309877|ref|ZP_01092011.1| hypothetical protein DSM3645_03658 [Blastopirellula marina DSM 3645] gi|87287641|gb|EAQ79541.1| hypothetical protein DSM3645_03658 [Blastopirellula marina DSM 3645] Length = 262 Score = 146 bits (368), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 106/281 (37%), Positives = 155/281 (55%), Gaps = 29/281 (10%) Query: 45 FGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD 101 G GG++R ++G VIA DRD A+ ++++R + Q F +L + D Sbjct: 1 MGGGGHTRQLAERVGDEGLVIACDRDLAAIERAEQSLRGLP--IKVTQRNFCELPSVLQD 58 Query: 102 ---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM-SCSGISASDVVNQANVKDLT 157 +DG++ DLG+SS Q+ +RGFSF GPLD+R G +A+D+VN + KDL Sbjct: 59 LEIDLIDGLLLDLGLSSDQLADRNRGFSFDSDGPLDLRFDETEGDTAADLVNLLSEKDLA 118 Query: 158 RILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKN--NRIHPATRSFQ 215 ++ GEE+ + RIA + RR+ PF DL+ L+ + Y + RIHPATR+FQ Sbjct: 119 DVIYQNGEERLSRRIAKKVCLRRKEKPFLLASDLAELVT-SCYPGRGARERIHPATRTFQ 177 Query: 216 ALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM 275 ALRI VN E+ L L+SA ++ GG + V+SFHSLEDR VK+ F Sbjct: 178 ALRIAVNRELSSLESILKSAPDFIRPGGKIAVISFHSLEDRRVKEAF------------- 224 Query: 276 IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 + +TKK ++P++E++ N RSRSAKLR R Sbjct: 225 ----REDERLEPMTKKPIIPSEEEIMRNPRSRSAKLRVARR 261 >gi|118474367|ref|YP_891757.1| S-adenosyl-methyltransferase MraW [Campylobacter fetus subsp. fetus 82-40] gi|263445750|sp|A0RNH4|RSMH_CAMFF RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|118413593|gb|ABK82013.1| S-adenosyl-methyltransferase MraW [Campylobacter fetus subsp. fetus 82-40] Length = 307 Score = 146 bits (368), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 93/299 (31%), Positives = 160/299 (53%), Gaps = 10/299 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H+PVLL+ V+ ILD T G GG+S + N +IA DRD ++S + Sbjct: 5 HIPVLLKPVLNSFKDIKNGTILDCTLGYGGHSEAILISNPNLKIIACDRDSESLSFCKAK 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 Y ++ ++++ F+ + + + + + G++ D+GVSS+Q+D +RGFS S LDMRM Sbjct: 65 FEKYSDRIKIYKSNFAGILNKIDHEDIRGILADIGVSSLQLDLDERGFSIN-SNNLDMRM 123 Query: 138 SCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 + SA +++N + L I E A +A IV R +P ++ ++LSS+I Sbjct: 124 DKNQTFSAKELINSYSKDQLADIFYKYAELPNAKSLAQKIVDARDKSPIKSAKELSSIIG 183 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 ++ KN + A +FQA+RI VN E++EL L + + +L ++SFHSLED+ Sbjct: 184 RSNL--KNRSVSIAILAFQAIRIEVNKELDELNNLLNLIKSSKINNAILDIISFHSLEDK 241 Query: 257 LVKKFFASRSGKVMAVRHMIPS---NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 + K F + ++ N H ++ + +TKK + P+++++ N RS AK+R Sbjct: 242 IAKSTFKEWEKSCICDNFVMKCECGNNH-SIGKILTKKPITPSEDEIKQNPRSSCAKMR 299 >gi|254468248|ref|ZP_05081654.1| S-adenosyl-methyltransferase MraW [beta proteobacterium KB13] gi|207087058|gb|EDZ64341.1| S-adenosyl-methyltransferase MraW [beta proteobacterium KB13] Length = 212 Score = 145 bits (367), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 90/212 (42%), Positives = 126/212 (59%), Gaps = 13/212 (6%) Query: 109 FDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEK 167 DLGVSS Q+D RGFSF +GPLDMRM S + A +VVN+ N DL +I GEEK Sbjct: 1 MDLGVSSPQLDDASRGFSFMHNGPLDMRMDQSQTLDACEVVNKYNESDLIKIFRDYGEEK 60 Query: 168 QASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEE 227 A RIA I K R +T +L+++++K+V ++ N+R HPAT+ FQALRI VN E+ E Sbjct: 61 FAKRIASNICKIRNEKNITSTLELANIVKKSVPYT-NSRKHPATKVFQALRIEVNQELNE 119 Query: 228 LAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSG-------KVMAVRHMIPSNA 280 L + L LK G L+ ++FHSLEDR+VK F + K + +R+ ++ Sbjct: 120 LKEALPLLFDVLKPQGRLLALTFHSLEDRIVKNFIKEITKLAPDTIPKFIPIRN---TDH 176 Query: 281 HPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 H ++ ++ T+E V N RSRSA+LR Sbjct: 177 HEKTKANVICNLIASTEE-VEANPRSRSARLR 207 >gi|225388291|ref|ZP_03758015.1| hypothetical protein CLOSTASPAR_02026 [Clostridium asparagiforme DSM 15981] gi|225045638|gb|EEG55884.1| hypothetical protein CLOSTASPAR_02026 [Clostridium asparagiforme DSM 15981] Length = 350 Score = 145 bits (367), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 106/315 (33%), Positives = 160/315 (50%), Gaps = 32/315 (10%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF--CKMGSNVI-ALDRDPFAVSCG 74 G H+ + +++++ L PG+ LDAT G GG++ C G I ALD DP Sbjct: 50 GMHISICVKEILDFLQIQPGQNGLDATLGYGGHTLEMLKCLEGKGHIHALDVDPIESEKT 109 Query: 75 QETMRDY---KEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + D E ++ F+++ + G D V+ DLGVSSMQID +RGF+F+ Sbjct: 110 KARLADLGYGPEILTVRLQNFAEIDQVAAEAGRFDFVLADLGVSSMQIDNPERGFTFKAE 169 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTT 188 GPLD+RM+ GISA+ + + +++LT +L +E A IA + R ++ TT Sbjct: 170 GPLDLRMNPERGISAAQRLKEITLEELTGMLTENADEPYAEEIAREVTGRLKRGEEIATT 229 Query: 189 QDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 L +I + F K + R+FQALRI VNNE E L L + L GG Sbjct: 230 TKLYQVIGDALAFLPEKDRKEAVKKSSQRTFQALRIDVNNEYEALYAFLEKLPEVLAPGG 289 Query: 244 LLIVVSFHSLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 +++FHS EDRLVKK F + G+ + I ++V+ P+QE+ A Sbjct: 290 RAAILTFHSGEDRLVKKSFKQYKKEGR----------------YSDICEEVIRPSQEECA 333 Query: 302 FNRRSRSAKLRAGMR 316 N R+RS K+R +R Sbjct: 334 RNSRARSTKMRWAVR 348 >gi|167745358|ref|ZP_02417485.1| hypothetical protein ANACAC_00049 [Anaerostipes caccae DSM 14662] gi|167655079|gb|EDR99208.1| hypothetical protein ANACAC_00049 [Anaerostipes caccae DSM 14662] Length = 367 Score = 145 bits (367), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 101/315 (32%), Positives = 161/315 (51%), Gaps = 32/315 (10%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCG 74 G H+ + +++++ L PG+ LDAT G GG+++ K ++ ALD D + Sbjct: 68 GMHISICVKEILEFLQIKPGQTGLDATLGYGGHTQEMLKCLDSKGHLYALDVDAIELEKT 127 Query: 75 QETMRDY---KEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 ++ + E ++ Q F+ + + G D V+ DLGVSSMQID DRGFS++ Sbjct: 128 RKRLEKLGYGPEILTIRQMNFADIDKIAEEAGPFDFVLADLGVSSMQIDNPDRGFSYKTE 187 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTT 188 GPLD+R++ G+SA++ + ++L +L +E A IA A+V + ++ TT Sbjct: 188 GPLDLRLNPEKGVSAAERLRTITRQELQGMLMENSDEPHADVIARAVVSKIKKGTAIDTT 247 Query: 189 QDLSSLIQKTVYFSKNNRIHPAT-----RSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 L +I++ + F + A R+FQALRI VN+E E L + L L GG Sbjct: 248 TKLREVIEEALEFLPEHEKKEAVKKTCQRTFQALRIDVNSEFEVLYEFLEKLPNVLAKGG 307 Query: 244 LLIVVSFHSLEDRLVKKFFAS--RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 +++FHS EDRLVKK F R G V+Q I+ V+ P+ E+ Sbjct: 308 RAAILTFHSGEDRLVKKSFKRLLREG----------------VYQEISTDVIRPSAEECR 351 Query: 302 FNRRSRSAKLRAGMR 316 N R+RS K+R ++ Sbjct: 352 MNSRARSTKMRWAIK 366 >gi|153855593|ref|ZP_01996709.1| hypothetical protein DORLON_02727 [Dorea longicatena DSM 13814] gi|149752014|gb|EDM61945.1| hypothetical protein DORLON_02727 [Dorea longicatena DSM 13814] Length = 354 Score = 145 bits (367), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 103/319 (32%), Positives = 162/319 (50%), Gaps = 34/319 (10%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCG 74 G H+ + + +++ + PG+ LDAT G GG++ + ++ LD DP + Sbjct: 53 GMHISICVNEILDFFDIQPGQQGLDATLGYGGHTSKMLEKLQGEGHIYGLDVDPIESA-- 110 Query: 75 QETMRDYKEQ------FSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSF 127 +T + +E+ ++ F+ + + G D V+ DLGVSSMQID DRGF+F Sbjct: 111 -KTKKRLEEKGFGPNILTVKLENFANIDKVAEEAGKFDFVLADLGVSSMQIDNPDRGFTF 169 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPF 185 + GPLD+RM+ GISA++ + + ++LT +L +E A IA AI ++ R+ Sbjct: 170 KAEGPLDLRMNPEKGISAAERLRDISKEELTGMLIENSDEPYAEEIAEAITEKIRKGGKI 229 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRS-----FQALRIFVNNEIEELAQGLRSAEKALK 240 +TT L +I++T+ F A R FQALRI VNNE E L L LK Sbjct: 230 ETTTGLHQVIEETLAFIPEKERKEAVRKSSQRVFQALRIDVNNEFEVLYDFLDKLPGVLK 289 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300 GG + +++FHS EDRLVKK F + ++ I K V+ P++E+ Sbjct: 290 PGGKVAILTFHSGEDRLVKKSFKQWKKE--------------GLYSEIAKDVIRPSKEEC 335 Query: 301 AFNRRSRSAKLRAGMRTVE 319 N R++ K+R +R E Sbjct: 336 FRNSRAKCTKMRWAIRAEE 354 >gi|313906115|ref|ZP_07839465.1| S-adenosyl-methyltransferase MraW [Eubacterium cellulosolvens 6] gi|313469055|gb|EFR64407.1| S-adenosyl-methyltransferase MraW [Eubacterium cellulosolvens 6] Length = 356 Score = 145 bits (366), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 106/333 (31%), Positives = 164/333 (49%), Gaps = 41/333 (12%) Query: 11 SAIHHTI-------GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSN 60 S I H I G H+P+++++++ L PG LD T G GG+S ++ + Sbjct: 38 SEIEHIISKGNTPAGMHIPIMVDEILDCLKIEPGMTGLDCTLGYGGHSSRMLELLQGSGH 97 Query: 61 VIALDRDPFAVSCGQETMRDY---KEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSM 116 + +LD DP + E MR +E ++ F+ + G D V+ DLGVSSM Sbjct: 98 LYSLDVDPIEIQKTTERMRAKGFSEEIWTPVHTNFANIDRVCEQYGPFDFVLADLGVSSM 157 Query: 117 QIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175 QID +RGFS++ GPLD+R + S G SA++ + + ++L +L +E A IA A Sbjct: 158 QIDNPERGFSYKTDGPLDLRFNPSKGESAAERLRSLDTEELIGLLIDNSDEPYAEEIAAA 217 Query: 176 IVKR-RQSAPFQTTQDLSSLIQKTVYFS-------KNNRIHPATRS----FQALRIFVNN 223 + R+ P TT L LI KT+ K ++ +S FQALRI VN+ Sbjct: 218 VASAFRKKEPLDTTTALRELITKTLLEDTPLRNALKTDQTEAVKKSCARVFQALRIDVNS 277 Query: 224 EIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPA 283 E E L + + LK GG +++FHS EDR+VKK F N Sbjct: 278 EFEVLVEFMDKLPHILKEGGRAAILTFHSGEDRIVKKEFK--------------RNQKDG 323 Query: 284 VFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 ++ +++ V+ P++E+ N R+ S KLR +R Sbjct: 324 LYTEVSRDVIRPSKEECFRNPRAHSTKLRWAIR 356 >gi|312601353|gb|ADQ90608.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Mycoplasma hyopneumoniae 168] Length = 291 Score = 145 bits (366), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 106/300 (35%), Positives = 157/300 (52%), Gaps = 26/300 (8%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDY 81 +LE++I L P +D T G GG+S + + SN ++ D+D A+ + + Sbjct: 1 MLEELILALEINPKGFYVDLTLGRGGHSLAILEKISNGKLVVFDKDQDALDQTRPKLLAL 60 Query: 82 KEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138 K+ + + FS+ Y+ + G VDG + DLGVSS QID +RGFS+ K G LDMRM Sbjct: 61 KQNIEIIWSDFSRFDFYLENLGIQFVDGFIIDLGVSSPQIDDPERGFSYSKDGNLDMRMD 120 Query: 139 CS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK 197 S +SA V+N+ + L I G+ A IA AI+ R P +TT +L +L++K Sbjct: 121 KSQKLSAFIVLNEYPYEKLVEIFFKYGQIPYAREIARAIINSR---PLKTTFELVNLVKK 177 Query: 198 TV---YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 + K N I FQA+RI VNNE++ L + L K LK G + +++FHSLE Sbjct: 178 VIPALVLVKKNFIKNV---FQAVRIEVNNELDSLQKLLEKLPKFLKQGSKVAIITFHSLE 234 Query: 255 DRLVKKFFAS--RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 DR+VKK F R K+ + +P + KV P ++ N R++SAKLR Sbjct: 235 DRIVKKAFLDLIRKDKLEFFQKGLP---------KFSMKVFRPKANELKSNPRAKSAKLR 285 >gi|217076157|ref|YP_002333873.1| S-adenosyl-methyltransferase MraW [Thermosipho africanus TCF52B] gi|262825832|sp|B7IEL8|RSMH_THEAB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|217036010|gb|ACJ74532.1| S-adenosyl-methyltransferase MraW [Thermosipho africanus TCF52B] Length = 291 Score = 145 bits (366), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 101/306 (33%), Positives = 162/306 (52%), Gaps = 32/306 (10%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H+PV+ ++VI L + +D T G GG++ + + VI LD D ++ ++ Sbjct: 8 HIPVMPKEVIEHLIWKKDGIYVDCTVGEGGHTLLLASISPDIFVIGLDIDSEVLNIAEKN 67 Query: 78 MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + + LF++++ L + + V G++ DLG+S+ Q+ RGF+F + PLD Sbjct: 68 LSSFT-NVKLFKSSYVDLPVVLKALNIEKVSGILIDLGISTYQLKAEGRGFTFNRDEPLD 126 Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM+ +A DVVN + K+L I+ GEE+ + RIA +IV R P +T +L Sbjct: 127 MRMNLEQKKTAYDVVNFYSEKELADIIFKYGEERFSRRIARSIVNSR---PINSTLELVE 183 Query: 194 LIQKTV---YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 I+K + K R H AT++FQA+RI VN E+ + L + L+ GG L V+SF Sbjct: 184 AIRKALPPQEIRKRKR-HFATKTFQAIRIEVNGELSNIENFLNNVPDLLEIGGRLAVISF 242 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDRLVK F + + +R ++ ++P++E++ N R+RSAK Sbjct: 243 HSLEDRLVKHFIKNSN----KLRQIVGP--------------IIPSKEEIDENPRARSAK 284 Query: 311 LRAGMR 316 LR R Sbjct: 285 LRIAER 290 >gi|222824174|ref|YP_002575748.1| S-adenosyl-methyltransferase MraW [Campylobacter lari RM2100] gi|263447001|sp|B9KD58|RSMH_CAMLR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|222539396|gb|ACM64497.1| S-adenosyl-methyltransferase MraW [Campylobacter lari RM2100] Length = 305 Score = 145 bits (366), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 96/299 (32%), Positives = 159/299 (53%), Gaps = 9/299 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 H+PVLL++V+ + LD T G GG+S++ + + IA D+D A++ +E Sbjct: 5 HIPVLLQEVLDAFDDFDSGDFLDCTLGYGGHSKALLQAHEKLRLIACDKDLEALNFSKEF 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 ++ ++++ S F + +P + + G++ D+GVSS+Q+D DRGFS S LDMRM Sbjct: 65 LKKFQDRISFNHIGFKDILTQIPTQNLRGILADIGVSSLQLDKNDRGFSLN-SDFLDMRM 123 Query: 138 SCSGI-SASDVVNQANVKDLTRILGILGE-EKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 + + SA +VVN + + L +I G+ AS + I+ R + ++LS +I Sbjct: 124 DQNNLLSAKEVVNSYSKEALEQIFKDYGDLAPVASMLTQKIINARSQKEITSAKELSQII 183 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 +N + A FQALRI VNNE+ EL L + EKA L ++SFHSLED Sbjct: 184 GNAKLKGRN--VSLALLVFQALRIEVNNELGELKSLLENIEKAKLKDCKLAIISFHSLED 241 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHP--AVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 R+VK F + I ++ + ++KK + ++E++++N RS AK+R Sbjct: 242 RIVKNTFKRWEKDCICDERAIKCECGKGHSLGKILSKKAISASKEEISYNSRSSCAKMR 300 >gi|319953733|ref|YP_004165000.1| ribosomal RNA small subunit methyltransferase h [Cellulophaga algicola DSM 14237] gi|319422393|gb|ADV49502.1| Ribosomal RNA small subunit methyltransferase H [Cellulophaga algicola DSM 14237] Length = 302 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 115/303 (37%), Positives = 161/303 (53%), Gaps = 23/303 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H PVLL++ I LN + +D TFG GG+S ++G+ + A D+D A+ + Sbjct: 4 HNPVLLKESIDGLNIKSDGIYVDVTFGGGGHSTEILSRLGAKGKLYAFDQDEDALKNAID 63 Query: 77 TMRDYKEQFSLFQATF---SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 E+F L F SQ + K VDG++ D GVSS Q D +RGFS + L Sbjct: 64 D-----ERFVLIHENFRFISQFLKFYGIKKVDGILGDFGVSSHQFDVAERGFSTRFDADL 118 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRMS + +SA DVVN DL R+L G+ + A+ IA AI+ R+ P +TT L Sbjct: 119 DMRMSKRNAVSAYDVVNTYAYDDLRRVLFQYGDLRNANAIATAIIANREETPIKTTDQLK 178 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 S +++ + ++I + +QA+RI VN EIE + + L L G L V+S+HS Sbjct: 179 SGLKQFLPARVEHKI--LAQIYQAIRIEVNQEIEVIKEFLLQVPDLLNEEGRLSVISYHS 236 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV---VVPTQEDVAFNRRSRSA 309 LEDRLVK FF RSGK P KKV VP+++++A N R+RSA Sbjct: 237 LEDRLVKNFF--RSGKFEGE----PDKDFYGNMSLPLKKVGGLTVPSKKEIAGNNRARSA 290 Query: 310 KLR 312 KLR Sbjct: 291 KLR 293 >gi|327330609|gb|EGE72355.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL097PA1] Length = 241 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 90/213 (42%), Positives = 122/213 (57%), Gaps = 5/213 (2%) Query: 104 VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGI 162 VD V+ DLG+SS QID +RGFS+ PLDMRM SG +A+ ++N+++ L R+L Sbjct: 10 VDSVLLDLGLSSFQIDEVERGFSYSVDSPLDMRMDQSSGRTAAQILNESDPGALVRMLRE 69 Query: 163 LGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV--YFSKNNRIHPATRSFQALRIF 220 GEEK A RI AIV R P +T+ L +I + + + HPA R+FQALRI Sbjct: 70 YGEEKFADRIVRAIVTERDRQPIETSGRLVEIITEAIPATVRRKRHSHPAKRTFQALRIA 129 Query: 221 VNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVM-AVRHMIPSN 279 VN E+E L L A L GG ++V+S+HSLEDR VK+ F A M+P + Sbjct: 130 VNREMETLPAVLPRALDRLDVGGRIVVLSYHSLEDRPVKEAFRDACADTAPAGLPMVPES 189 Query: 280 AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 A F +T+ P ++VA N RS SA+LR Sbjct: 190 MA-AKFNPVTRGAERPDADEVATNPRSASARLR 221 >gi|223935232|ref|ZP_03627150.1| S-adenosyl-methyltransferase MraW [bacterium Ellin514] gi|223896116|gb|EEF62559.1| S-adenosyl-methyltransferase MraW [bacterium Ellin514] Length = 353 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 98/314 (31%), Positives = 162/314 (51%), Gaps = 29/314 (9%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCG 74 G H + + +++ +L P PG++ +DAT G GG++ + G ++ LD DP + Sbjct: 53 GSHRSICVREIMEVLAPKPGEIAVDATLGYGGHALEILRAIQPGGRLVGLDVDPMEMPKT 112 Query: 75 QETMRDY---KEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQ 128 + +R E + ++ F+ L + +G+ G ++ DLG+SSMQID RGF+F+ Sbjct: 113 ETRLRSVGAPAESLIIRRSNFAGLPQVLAGEGIPGADIILADLGLSSMQIDNPARGFTFK 172 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 GPLD+R++ G AS ++ +L RIL +E A +A I++ + P T Sbjct: 173 FEGPLDLRLNPERGRPASALLATLKEPELIRILQDNADEPDAGLLAKGILQAQLRYPITT 232 Query: 188 TQDLSSLIQKTVYFSKNNRIHPAT-----RSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 T L+ +I++ + N+ R FQALRI VN+E L LR+ +G Sbjct: 233 TTGLAEVIREAFRSAHRNKTKDEANTSIRRVFQALRIAVNDEFGALDMFLRNLPGCSNSG 292 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G + +++FHS EDR VKK F + GK V+ SI ++++ P++E+ Sbjct: 293 GRVAILTFHSGEDRRVKKAF--QDGK------------RAGVYSSIAEEIIRPSREETRS 338 Query: 303 NRRSRSAKLRAGMR 316 N R+ SAKLR +R Sbjct: 339 NPRASSAKLRWAIR 352 >gi|255588801|ref|XP_002534724.1| UDP-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase, putative [Ricinus communis] gi|223524690|gb|EEF27660.1| UDP-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase, putative [Ricinus communis] Length = 850 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 95/239 (39%), Positives = 137/239 (57%), Gaps = 16/239 (6%) Query: 102 KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRIL 160 + VDG++ DLG+SS QID G RGFSF+ GPLDMRM S G +A++ + + K L ++ Sbjct: 11 QAVDGILLDLGISSPQIDEGVRGFSFRFDGPLDMRMDQSRGKTAAEWLATMSEKQLAEVI 70 Query: 161 GILGEEKQASRIAHAIVKRRQSA-PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRI 219 GEE+ A ++A AIVK R+ TT L+ ++ + ++ + +PATR+FQALRI Sbjct: 71 RDYGEERFAKQVARAIVKEREDGHAITTTGQLAKIVAGAIPKNEPGQ-NPATRTFQALRI 129 Query: 220 FVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSN 279 FVN E+EEL+ L + L+ G L V+SFHSLEDR+VK+F S R +P+ Sbjct: 130 FVNQELEELSLVLPDCLQLLRPQGRLAVISFHSLEDRIVKRFIQSEVD-----RDNLPAG 184 Query: 280 AHPAVFQSITK-------KVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDDSFVHLP 331 P + + + K + P + +VA N RSRSA LR RT + V +P Sbjct: 185 L-PVRAKDLPQPRLLAVGKAIKPGKAEVAANVRSRSAVLRVAERTQGEAFSRRKVVLMP 242 >gi|291539383|emb|CBL12494.1| S-adenosyl-methyltransferase MraW [Roseburia intestinalis XB6B4] Length = 350 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 100/313 (31%), Positives = 165/313 (52%), Gaps = 28/313 (8%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF--CKMG-SNVIALDRDPFAVSCG 74 G H+ +++++++ LN PG+ DAT G GG++++ C G ++ A D DP + Sbjct: 51 GMHISIMVQEILDTLNIQPGETGFDATLGYGGHTKAMLACLNGQGHIYATDVDPEESAKT 110 Query: 75 QETMRD--YKEQ-FSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 ++ + + Y E ++ F + + + G D ++ DLGVSSMQID RGFSF+ Sbjct: 111 KKRLEELGYGEDILTIRLQNFCTIDEIAKEAGGFDFILADLGVSSMQIDNPKRGFSFKVD 170 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTT 188 GPLD+R++ +GISA++ ++ ++L +L +E +A AI R+ + TT Sbjct: 171 GPLDLRLNQEAGISAAERLDTITREELAGMLYENSDEPYCEELAKAITDEIRKGSRIDTT 230 Query: 189 QDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 L +I+KT+ F K+ R+FQALRI VN E E L + + ALK GG Sbjct: 231 TKLREVIEKTLDFLPEKEKKDTIKKTCQRTFQALRIDVNREFEVLYEFMEKLPDALKPGG 290 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 + +++FHS ED+LVKK + ++ +K VV P+ ++ A N Sbjct: 291 RVAILTFHSGEDKLVKK--------------ALKEGCRAGIYADYSKDVVRPSAQECAQN 336 Query: 304 RRSRSAKLRAGMR 316 R+RS K+R +R Sbjct: 337 GRARSTKMRWAVR 349 >gi|326518102|dbj|BAK07303.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 272 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 96/260 (36%), Positives = 133/260 (51%), Gaps = 22/260 (8%) Query: 75 QETMRDYK--EQFSLFQATFSQLQDYVPDK--GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 Q T+R Y + F + + + + D GVDG++ DLG+SSMQ++ DRGFS Sbjct: 8 QGTLRAYTHVKNFKYIKHVLGGVDESLADGSCGVDGILIDLGMSSMQVNRSDRGFSVLND 67 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 GPLDMRM + ++A D++N ++ RIL GEE + IVK R++ +T Sbjct: 68 GPLDMRMDPRATLTAEDILNSWPELEVGRILRDYGEESNWQSLQRRIVKERKTGGLHSTG 127 Query: 190 DLSSLIQKTVYFS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L LIQ+T S + I ATR FQALRI VN+E+ L L S L G L V Sbjct: 128 ELVKLIQRTCTISGGRQGWIKTATRVFQALRIAVNDELRTLEDALHSCFDCLATDGRLAV 187 Query: 248 VSFHSLEDRLVKKFF-------ASRSGKVMAVRHMIPSNAHPAVFQSI--------TKKV 292 +SFHSLEDR+VK+ F + I P Q + TK+ Sbjct: 188 ISFHSLEDRIVKQTFLELIHGGEADGDDDDLAYADIDDEDEPWFKQRVQGTNGTVLTKRP 247 Query: 293 VVPTQEDVAFNRRSRSAKLR 312 + P+QE+ N+R RSAKLR Sbjct: 248 ITPSQEEEKLNQRCRSAKLR 267 >gi|126643217|ref|YP_001086201.1| S-adenosylmethionine methyltransferase [Acinetobacter baumannii ATCC 17978] Length = 223 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 90/218 (41%), Positives = 127/218 (58%), Gaps = 10/218 (4%) Query: 102 KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRIL 160 + VDG++ DLGVSS Q+D +RGFSF + GPLDMRM S G++A++ + + +DL I+ Sbjct: 7 QSVDGIMADLGVSSPQLDQAERGFSFMQDGPLDMRMDNSKGLTAAEWLLEVEEEDLANII 66 Query: 161 GILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIF 220 GEE+ + RIA AI +Q+ TT L+ ++ KT + HPATR+FQA+RI Sbjct: 67 YQYGEERYSRRIARAI---KQAGKLDTTAQLAEIV-KTAHPKWEKHKHPATRTFQAIRIA 122 Query: 221 VNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA 280 +N E++++ L A LK G L V+SFHSLEDRL+K+F S +P Sbjct: 123 INKELDDIEVFLPQAVDLLKPKGRLSVISFHSLEDRLIKQFIQKESTLAEDSGWGMPQQ- 181 Query: 281 HPAVFQSITKKV--VVPTQEDVAFNRRSRSAKLRAGMR 316 V KK+ V ++E+V N RSRSA LR R Sbjct: 182 --QVDTRRLKKISRVRASEEEVKANPRSRSAWLRVAER 217 >gi|197304029|ref|ZP_03169061.1| hypothetical protein RUMLAC_02766 [Ruminococcus lactaris ATCC 29176] gi|197296997|gb|EDY31565.1| hypothetical protein RUMLAC_02766 [Ruminococcus lactaris ATCC 29176] Length = 351 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 98/315 (31%), Positives = 169/315 (53%), Gaps = 31/315 (9%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF--CKMG-SNVIALDRDPFAVSCG 74 G H+ +++++++ L+ PG+ DAT G GG++++ C G ++ A D DP + Sbjct: 51 GMHISIMVKEILDFLDIQPGQTGFDATLGYGGHTKAMLECLKGQGHIYATDVDPEESAKT 110 Query: 75 QETMRDY---KEQFSLFQATFSQLQDYVPDK--GVDGVVFDLGVSSMQIDCGDRGFSFQK 129 ++ + + +E ++ F + D + +K G D ++ DLGVSSMQID RGFSF+ Sbjct: 111 KKRLEEQGFGEEILTVCLQNFCTI-DEIAEKVGGFDFILADLGVSSMQIDNPKRGFSFKA 169 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQT 187 GPLD+R++ GISA++ ++ + ++L +L +E +A AI R+ T Sbjct: 170 DGPLDLRLNQEKGISAAERLDTISREELAGMLYENSDEPYCEELAKAITDEIRRGNRIDT 229 Query: 188 TQDLSSLIQKTVYFSKNNR------IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 T L ++I+KT+ F +N+ R+FQALRI VNNE E L + + AL+ Sbjct: 230 TTKLRNVIEKTLSFLPDNKEKKDIVKKTCQRTFQALRIDVNNEFEVLYEFMEKLPDALRP 289 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 GG + +++FHS ED+LVKK + + ++ K V+ P+ ++ A Sbjct: 290 GGRVAILTFHSGEDKLVKK--------------ALKAGYKAGIYSDYAKDVIRPSAQECA 335 Query: 302 FNRRSRSAKLRAGMR 316 N R+RS K+R ++ Sbjct: 336 KNGRARSTKMRWAVK 350 >gi|315453816|ref|YP_004074086.1| putative S-adenosyl-L-methionine-dependent methyltransferase mraW [Helicobacter felis ATCC 49179] gi|315132868|emb|CBY83496.1| putative S-adenosyl-L-methionine-dependent methyltransferase mraW [Helicobacter felis ATCC 49179] Length = 288 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 105/303 (34%), Positives = 162/303 (53%), Gaps = 32/303 (10%) Query: 20 HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCG 74 H VLL++VI P A +++D T G GG+S + + + +I +DRD A S Sbjct: 2 HQSVLLQEVIQAFAPLAQARDPLLIDCTLGLGGHSLTLLQTYPHLRIIGIDRDLEASSIA 61 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGV----DGVVFDLGVSSMQIDCGDRGFSFQKS 130 ++ + + +F+ T++++ + D+G+ GV+ DLGVSS+Q+D RGF F S Sbjct: 62 EQRLALHASRFTYRYGTYAEVIAQLIDEGIWQNCHGVLADLGVSSLQLDNPSRGFGF-AS 120 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM + + A V+N ++ DL ++L GE + A +IAH IV RR FQ+ Sbjct: 121 HTLDMRMDTQASLDAFKVINHYSLYDLEQVLEK-GEVRGAKKIAHLIVNRRHKCLFQSGM 179 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 +L+ + + + + HPAT FQA+R+ VN EI+ L + L K L+ L I +S Sbjct: 180 ELAEFLSQHL---RRTHHHPATLVFQAVRMEVNAEIQNL-RALLEYSKQLQNAHLAI-IS 234 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDR VK F K V ++KK + P ++++ N RSRSA Sbjct: 235 FHSLEDREVKHTF-KEYAKSYGV--------------CLSKKPITPCKQEIQDNPRSRSA 279 Query: 310 KLR 312 K+R Sbjct: 280 KMR 282 >gi|291551135|emb|CBL27397.1| S-adenosyl-methyltransferase MraW [Ruminococcus torques L2-14] Length = 359 Score = 144 bits (362), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 98/314 (31%), Positives = 165/314 (52%), Gaps = 29/314 (9%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPFAVSCG 74 G H+ +++ +++ L PG+ DAT G GG++++ K ++ A D DP + Sbjct: 58 GMHISIMVNEILDFLKIQPGETGFDATLGYGGHTKAMLERLKGEGHIYATDVDPEESAKT 117 Query: 75 QETMRDY---KEQFSLFQATFSQLQDYVPD-KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 ++ + D ++ S+ F + + + G D ++ DLGVSSMQID RGFSF+ + Sbjct: 118 RKRLADQGFGEDILSIRLQNFCTIDEIAKEVGGFDFILADLGVSSMQIDNPKRGFSFKVN 177 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTT 188 GPLD+R++ GISA++ ++ + ++L +L +E +A AI R+ TT Sbjct: 178 GPLDLRLNQEKGISAAERLDNISEEELAGMLYENSDEPYCEELAKAITTEIRKGNRIDTT 237 Query: 189 QDLSSLIQKTVYFSKNNR------IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 L ++I+KT+ F NN+ R+FQALRI VNNE E L + + ALK G Sbjct: 238 TKLRNVIEKTLDFLPNNKEKKDIIKKTCQRTFQALRIDVNNEFEVLYEFMEKLPGALKPG 297 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G + +++FHS ED+LVKK + + ++ + VV P+ ++ A Sbjct: 298 GRVAILTFHSGEDKLVKK--------------ALKAGYKEGIYSEYARDVVRPSAQECAQ 343 Query: 303 NRRSRSAKLRAGMR 316 N R+RS K+R ++ Sbjct: 344 NGRARSTKMRWAVK 357 >gi|163814931|ref|ZP_02206319.1| hypothetical protein COPEUT_01082 [Coprococcus eutactus ATCC 27759] gi|158449870|gb|EDP26865.1| hypothetical protein COPEUT_01082 [Coprococcus eutactus ATCC 27759] Length = 348 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 98/313 (31%), Positives = 161/313 (51%), Gaps = 28/313 (8%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCG 74 G H+ + + +++ PG+ LDAT G GG++ + ++ ALD DP + Sbjct: 48 GMHISICVNEILDFFQIQPGQQGLDATLGYGGHTMRMLEQLHGEGHMYALDVDPIEIVKT 107 Query: 75 QETMRD--YKEQ-FSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 ++ + D Y E ++ Q F + + G D ++ DLGVSSMQID DRGF+++ Sbjct: 108 KQRLADAGYGEDILTIKQTNFRNIDKVAEEAGKFDFILADLGVSSMQIDNPDRGFTYKFD 167 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF-QTT 188 GPLD+R+ G SA++ + + + ++L + +E A IA I+KR ++ + +TT Sbjct: 168 GPLDLRLDPEKGESAAERLREVSYEELVGMFQENSDEPYAEEIATVIMKRNRTKNYVETT 227 Query: 189 QDLSSLIQKTVYFSKNNRIHPAT-----RSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 + I++ + F A R FQALRI VN+E E L L AL+ GG Sbjct: 228 IQMKEAIEEALSFVPEKERKEAVKKSCQRCFQALRIDVNSEFEVLYDFLDKLPDALRPGG 287 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 + +++FHS EDRLVK+ F + A V+ ++K V+ P+ E+ A N Sbjct: 288 RVAILTFHSGEDRLVKRAFK--------------AGAKAGVYSEVSKDVIRPSAEECARN 333 Query: 304 RRSRSAKLRAGMR 316 R+RS K+R ++ Sbjct: 334 PRARSTKMRWAVK 346 >gi|154148181|ref|YP_001406384.1| S-adenosyl-methyltransferase MraW [Campylobacter hominis ATCC BAA-381] gi|171769702|sp|A7I1J3|RSMH_CAMHC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|153804190|gb|ABS51197.1| S-adenosyl-methyltransferase MraW [Campylobacter hominis ATCC BAA-381] Length = 310 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 98/305 (32%), Positives = 160/305 (52%), Gaps = 17/305 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 H+PVL +V+ + G +++D T G G+S + N+ A D+D A+ ++ Sbjct: 5 HIPVLRNEVVDIFKDLQG-LLIDCTLGFAGHSSAILSANENIRIFACDKDDEALDFSKKR 63 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDK------GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +K + +F++ FS ++ V G++ D+GVSS+QID DRGFS KS Sbjct: 64 VEIFKNRIKIFKSGFSNFLPFLETNEILNLSNVVGILADIGVSSLQIDNNDRGFSL-KSD 122 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM + + A VVN + DL RI E A +IA I R + ++ Sbjct: 123 ALDMRMDKNASLDAKFVVNHYSRSDLERIFYEFAELTNAKQIAAKIANYRADKEITSAKE 182 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+++I + + KN I AT +FQA+RI VN E++EL + L S E + + +++F Sbjct: 183 LATIIGTSNF--KNRSISTATLAFQAIRIEVNKELDELNKLLDSIENSAIQNAKIAIITF 240 Query: 251 HSLEDRLVKKFFASRSGKVMA---VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 HSLED++VK F + + N H A+ + +TKK + + +++ N R++ Sbjct: 241 HSLEDKIVKNRFKKWAQSCICPPFFERCECGNNH-AIGKILTKKPITASADELKQNSRAK 299 Query: 308 SAKLR 312 SAKLR Sbjct: 300 SAKLR 304 >gi|260881478|ref|ZP_05404498.2| S-adenosyl-methyltransferase MraW [Mitsuokella multacida DSM 20544] gi|260848533|gb|EEX68540.1| S-adenosyl-methyltransferase MraW [Mitsuokella multacida DSM 20544] Length = 369 Score = 143 bits (361), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 96/321 (29%), Positives = 171/321 (53%), Gaps = 35/321 (10%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCG 74 G H+P+++++++ +L PG+ DAT G GG++ + + ++ D DP Sbjct: 62 GTHIPIMVKEILEVLAIKPGERGFDATLGYGGHTLAMLEKLEGKGHLYGGDVDPIESEKT 121 Query: 75 QETMRDY---KEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + +R + + Q F ++ + G D V+ DLGVSSMQID +RGF+++ Sbjct: 122 EARIRAKGFGPDIWERRQMNFCEIDKLAEEVGPFDFVLADLGVSSMQIDNPERGFTYKSD 181 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 GPLD+R++ +GISA+D + Q + ++L ++ +E A IA IV+ + P +TT+ Sbjct: 182 GPLDLRLNPQAGISAADRLRQLDYEELVGMMQENADEPYAEAIARQIVRAEKHRPIRTTR 241 Query: 190 DLSSLIQ---KTVYFSKN--NRI--------HPATRSFQALRIFVNNEIEELAQGLRSAE 236 +L ++I+ + V+ ++ +I + R FQALRI VN+E E L + + Sbjct: 242 ELYAVIEAALEKVHLPRDAAGKIPDRRDVIRKSSARVFQALRIDVNHEYEVLYEFMEKLP 301 Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296 AL GG + +++FHS EDR+VKK F + + +++ I ++V+ P+ Sbjct: 302 YALAPGGRVAILTFHSGEDRIVKKAFKAFHQQ--------------GIYRDIAREVIRPS 347 Query: 297 QEDVAFNRRSRSAKLRAGMRT 317 +E+ N R+ S KLR +R Sbjct: 348 REECYENSRAHSTKLRWAIRA 368 >gi|162447772|ref|YP_001620904.1| S-adenosylmethionine-dependent methyltransferase [Acholeplasma laidlawii PG-8A] gi|263433290|sp|A9NGP8|RSMH2_ACHLI RecName: Full=Ribosomal RNA small subunit methyltransferase H 2; AltName: Full=16S rRNA m(4)C1402 methyltransferase 2; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH 2 gi|161985879|gb|ABX81528.1| S-adenosylmethionine-dependent methyltransferase [Acholeplasma laidlawii PG-8A] Length = 344 Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 106/314 (33%), Positives = 168/314 (53%), Gaps = 33/314 (10%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCG 74 G H +++++++ + G+V +D T G GG+S+ K ++ +D+DP + Sbjct: 48 GMHRSIMVDEILHFFDIKLGQVGIDLTTGFGGHSKEILKKLNHTGHLHGIDQDPIELPKT 107 Query: 75 QETMRDY---KEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + Y K+ F+L Q F D + +G D ++ DLGVSSMQID DRGF+F++ G Sbjct: 108 RARLESYGFNKDNFTLHQLNFKDF-DAIDTEGFDFILADLGVSSMQIDNPDRGFTFREEG 166 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR-QSAPFQTTQ 189 PLD+RM+ + GI A + + + ++ +L +E A IA I K + Q +TT Sbjct: 167 PLDLRMNPNVGIPAYVRLLEMSEIEIEHMLIENADEIYAKEIAKEITKAKIQGRYIRTTL 226 Query: 190 DLSSLI-------QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 DL +I K VY + + ++R+FQALRI VN+E E L + L L G Sbjct: 227 DLHQVIASALQKVSKKVYEEELKK--ASSRTFQALRIDVNSEYEVLFEMLDKLPGKLNPG 284 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G + ++SFHS EDRLVKK F + VF S+T+ ++P++E+V Sbjct: 285 GKVAILSFHSGEDRLVKKAFKQY--------------LNDGVF-SMTEGPILPSKEEVFN 329 Query: 303 NRRSRSAKLRAGMR 316 N R+RSAKLR ++ Sbjct: 330 NPRARSAKLRIAIK 343 >gi|319936250|ref|ZP_08010669.1| S-adenosyl-methyltransferase MraW [Coprobacillus sp. 29_1] gi|319808682|gb|EFW05224.1| S-adenosyl-methyltransferase MraW [Coprobacillus sp. 29_1] Length = 346 Score = 142 bits (359), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 100/315 (31%), Positives = 167/315 (53%), Gaps = 30/315 (9%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73 +G H+ +++ +++ L+ G++ LD T G GG++ + ++ ALD DP Sbjct: 46 VGMHLSIMVNEILEFLDIQEGQIGLDCTLGYGGHTLKMLECLNHTGHMYALDIDPIESVK 105 Query: 74 GQETM--RDYKEQF-SLFQATFSQLQDYVPDK-GV-DGVVFDLGVSSMQIDCGDRGFSFQ 128 +E + + Y E+ ++ Q F + DYV + G+ D V+ DLGVSSMQID +RGFS++ Sbjct: 106 TKERLFNKGYGEELLTIKQCNFKDI-DYVSKEVGLFDFVLADLGVSSMQIDNPERGFSYK 164 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF-Q 186 K GPLD+R++ GI AS + + N L ++ +E A IA I ++ + Sbjct: 165 KEGPLDLRLNPEKGIPASQKLQELNKTQLEQLFIDNSDEPYAKEIAKNIDSFLKTGRLIE 224 Query: 187 TTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 TT DL +I+K++ F K + A R FQALRI VNNE + L + + LK+ Sbjct: 225 TTTDLYKIIEKSLSFIPVNERKESIKKSAARVFQALRIEVNNEFDVLIEFMEKLPNILKS 284 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 GG + +++FHS EDR+VKK F + ++ + V+ P++E+ Sbjct: 285 GGRVAILTFHSGEDRIVKKAFKEMK--------------NLGIYSDAARNVIRPSKEECH 330 Query: 302 FNRRSRSAKLRAGMR 316 N R++S K+R ++ Sbjct: 331 MNSRAKSTKMRWAIK 345 >gi|254671182|emb|CBA08306.1| S-adenosyl-methyltransferase [Neisseria meningitidis alpha153] Length = 249 Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 85/209 (40%), Positives = 123/209 (58%), Gaps = 3/209 (1%) Query: 111 LGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQA 169 G+SS QID G RGFSF+ PLDMRM + G+SA++ + A+ +DL ++ GEE+ + Sbjct: 26 WGISSPQIDDGSRGFSFRFDAPLDMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFS 85 Query: 170 SRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELA 229 +IA AIV +R +P TT+ L+ ++ + V + + PATR+FQA+RIF+N E+EE+ Sbjct: 86 RQIARAIVAQRAESPIDTTRKLAQIVAQNVRTRERGQ-DPATRTFQAVRIFINRELEEVG 144 Query: 230 QGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSI 288 L LK GG L V++FHSLEDR+VK+F S R A P I Sbjct: 145 AVLPQVMCRLKEGGRLAVIAFHSLEDRIVKQFVKKYSQHAPLPRWAAVREADLPEPPLKI 204 Query: 289 TKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 + + P + ++A N R+RSA LR RT Sbjct: 205 VGRALKPGEAEIAANPRARSAVLRVAERT 233 >gi|226322767|ref|ZP_03798285.1| hypothetical protein COPCOM_00539 [Coprococcus comes ATCC 27758] gi|225208748|gb|EEG91102.1| hypothetical protein COPCOM_00539 [Coprococcus comes ATCC 27758] Length = 356 Score = 142 bits (358), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 101/317 (31%), Positives = 166/317 (52%), Gaps = 35/317 (11%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF--CKMG-SNVIALDRDPFAVSCG 74 G H+ +++++++ L PG+V DAT G GG++++ C G ++ A D DP + Sbjct: 55 GMHISIMVQEILDFLKIQPGEVGFDATLGYGGHTKAMLQCLEGKGHIYATDVDPEESA-- 112 Query: 75 QETMRDYKEQ------FSLFQATFSQLQDYVPD-KGVDGVVFDLGVSSMQIDCGDRGFSF 127 +T + +EQ ++ F + + + G D ++ DLGVSSMQID RGFSF Sbjct: 113 -KTKKRLEEQGFGEDILTIRLQNFCTIDEIAKEVGGFDFILADLGVSSMQIDNPKRGFSF 171 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPF 185 + GPLD+R++ GISA++ ++ + ++L +L +E +A AI + R+ Sbjct: 172 KVDGPLDLRLNQEKGISAAERLDTISREELAGMLYENSDEPYCEELAKAITEEIRKGHRI 231 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHP------ATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 TT L +I++T+ F N+ R+FQALRI VN+E E L + + AL Sbjct: 232 DTTTKLRQVIEQTLSFLPENKEKKDIIRKTCQRTFQALRIDVNHEFEVLYEFMEKLPGAL 291 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 K GG + +++FHS ED+LVKK + + V+ K VV P+ E+ Sbjct: 292 KPGGRVAILTFHSGEDKLVKK--------------ALKAGYREGVYSEYAKDVVRPSAEE 337 Query: 300 VAFNRRSRSAKLRAGMR 316 A N R+RS K+R ++ Sbjct: 338 CAQNGRARSTKMRWAVK 354 >gi|54020186|ref|YP_115916.1| hypothetical protein mhp406 [Mycoplasma hyopneumoniae 232] gi|76363868|sp|Q600P9|RSMH_MYCH2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|53987359|gb|AAV27560.1| conserved hypothetical protein [Mycoplasma hyopneumoniae 232] Length = 296 Score = 142 bits (358), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 111/304 (36%), Positives = 160/304 (52%), Gaps = 26/304 (8%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 HVPVLLE++I L P +D T G GG+S + + SN ++ D+D A+ + Sbjct: 2 HVPVLLEELILALEINPKGFYVDLTLGRGGHSLAILEKISNGKLVVFDKDQDALDQTRPK 61 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + K+ + + FS+ Y+ + G VDG + DLGVSS QID RGFS+ K G LD Sbjct: 62 LLALKQNIEIIWSDFSRFDFYLENLGIQFVDGFIIDLGVSSPQIDDPARGFSYSKDGNLD 121 Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM S +SA V+N+ + L I G+ A IA AI+ R P +TT +L + Sbjct: 122 MRMDKSQKLSAFIVLNEYPYEKLVEIFFKYGQIPYAREIARAIINSR---PLKTTFELVN 178 Query: 194 LIQKTV---YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L++K + K N I FQA+RI VNNE++ L + L K LK G + +++F Sbjct: 179 LVKKVIPALVLVKKNFIK---NVFQAVRIEVNNELDSLQKLLEKLPKFLKQGSKVAIITF 235 Query: 251 HSLEDRLVKKFFAS--RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 HSLEDR+VKK F R K+ + +P + KV P ++ N R++S Sbjct: 236 HSLEDRIVKKAFLDLIRKDKLEFFQKGLP---------KFSMKVFRPKANELKSNPRAKS 286 Query: 309 AKLR 312 AKLR Sbjct: 287 AKLR 290 >gi|167932993|ref|ZP_02520080.1| S-adenosyl-methyltransferase MraW [candidate division TM7 single-cell isolate TM7b] Length = 242 Score = 142 bits (358), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 94/211 (44%), Positives = 124/211 (58%), Gaps = 19/211 (9%) Query: 105 DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGIL 163 D ++ DLGVSS Q+D GDRGFSF GPLDMRM SA+D+VN + L IL Sbjct: 45 DVIMVDLGVSSPQLDNGDRGFSFMYDGPLDMRMDQRQKFSAADIVNSYPKQKLIEILVRY 104 Query: 164 GEEKQ--ASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFV 221 GEE+ A RIA I KRR PF T +L+ +I + ++ +IHPATR+FQALRI V Sbjct: 105 GEERLSFAKRIADEIYKRR---PFTKTSELAKMIVE-IHRGGWQKIHPATRTFQALRIEV 160 Query: 222 NNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH 281 N E+ ++ L + L +GG + ++SFHSLEDRLVK+FF SG + Sbjct: 161 NQELAQIESLLPLLLQLLNSGGRVGIISFHSLEDRLVKRFFKDNSGL-----------SF 209 Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 + + + KK + D A+N RSRSAKLR Sbjct: 210 ESELELLNKKPLDGATYD-AYNPRSRSAKLR 239 >gi|325263876|ref|ZP_08130609.1| S-adenosyl-methyltransferase MraW [Clostridium sp. D5] gi|324030914|gb|EGB92196.1| S-adenosyl-methyltransferase MraW [Clostridium sp. D5] Length = 357 Score = 142 bits (358), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 99/313 (31%), Positives = 158/313 (50%), Gaps = 28/313 (8%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCG 74 G H+ + +++++ L PG+ LDAT G GG++ K N + ALD DP Sbjct: 58 GMHISICVQEILEFLQIKPGQKGLDATLGYGGHTLEMLKCLENQGHIYALDVDPIESQKT 117 Query: 75 QETMRDY---KEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E + + E ++ F+ + + G D ++ DLGVSSMQID +RGFS++ Sbjct: 118 KERLSNLGYGPEILTVRLLNFANIDQIAAEAGPFDFILADLGVSSMQIDNPERGFSYKTE 177 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV-KRRQSAPFQTT 188 GPLD+RM+ +GISA++ + ++L +L +E A IA A+V + ++ +TT Sbjct: 178 GPLDLRMNPEAGISAAERLGTITSEELQGMLVENADEPYAEEIADAVVLETKKGKKIETT 237 Query: 189 QDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 + L +I+ + F K R+FQALRI +NNE E L L L GG Sbjct: 238 RQLREVIESALSFLPAAERKEAVKKSCQRTFQALRIDINNEFEVLYAFLDKLPDVLAPGG 297 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 +++FHS EDRLVKK F + ++ +K V+ P+ E+ N Sbjct: 298 RAAILTFHSGEDRLVKKSFKRLYNE--------------GIYSDYSKDVIRPSAEECIRN 343 Query: 304 RRSRSAKLRAGMR 316 R+RS K+R ++ Sbjct: 344 SRARSTKMRWAVK 356 >gi|240145398|ref|ZP_04743999.1| S-adenosyl-methyltransferase MraW [Roseburia intestinalis L1-82] gi|257202523|gb|EEV00808.1| S-adenosyl-methyltransferase MraW [Roseburia intestinalis L1-82] Length = 350 Score = 142 bits (357), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 99/313 (31%), Positives = 164/313 (52%), Gaps = 28/313 (8%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF--CKMG-SNVIALDRDPFAVSCG 74 G H+ +++++++ L PG+ DAT G GG++++ C G ++ A D DP + Sbjct: 51 GMHISIMVQEILDTLKIQPGETGFDATLGYGGHTKAMLACLNGQGHIYATDVDPEESAKT 110 Query: 75 QETMRD--YKEQ-FSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 ++ + + Y E ++ F + + + G D ++ DLGVSSMQID RGFSF+ Sbjct: 111 KKRLEELGYGEDILTIRLQNFCTIDEIAKEAGGFDFILADLGVSSMQIDNPKRGFSFKVD 170 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTT 188 GPLD+R++ +GISA++ ++ ++L +L +E +A AI R+ + TT Sbjct: 171 GPLDLRLNQEAGISAAERLDTITREELAGMLYENSDEPYCEELAKAITDEIRKGSRIDTT 230 Query: 189 QDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 L +I+KT+ F K+ R+FQALRI VN E E L + + ALK GG Sbjct: 231 TKLREVIEKTLDFLPEKEKKDTIKKTCQRTFQALRIDVNREFEVLYEFMEKLPDALKPGG 290 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 + +++FHS ED+LVKK + ++ +K VV P+ ++ A N Sbjct: 291 RVAILTFHSGEDKLVKK--------------ALKEGCRAGIYADYSKDVVRPSAQECAQN 336 Query: 304 RRSRSAKLRAGMR 316 R+RS K+R +R Sbjct: 337 GRARSTKMRWAVR 349 >gi|315606646|ref|ZP_07881657.1| S-adenosyl-methyltransferase MraW [Prevotella buccae ATCC 33574] gi|315251656|gb|EFU31634.1| S-adenosyl-methyltransferase MraW [Prevotella buccae ATCC 33574] Length = 380 Score = 142 bits (357), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 88/232 (37%), Positives = 130/232 (56%), Gaps = 8/232 (3%) Query: 85 FSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-S 140 F+ ++ F L++++ GVD G++ DLGVSS D RGFSF+ PLDMRM+ Sbjct: 148 FTFVRSNFRYLKNWMRYYGVDHIDGLLADLGVSSHHFDDETRGFSFRFDAPLDMRMNKRG 207 Query: 141 GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVY 200 G +A+D+VN+ + L + + GE K + RIA A+VK R +TTQD ++ Sbjct: 208 GRTAADIVNEYDENRLADVFYLYGELKNSRRIAAALVKARAQGRIETTQDFVQAVEPL-- 265 Query: 201 FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKK 260 F + + FQALRI VNNE+ L + L +A + LK GG L V+++HSLEDR+VK Sbjct: 266 FRREREKKDMAKLFQALRIEVNNEMTALKEMLLAATELLKPGGRLSVITYHSLEDRIVKN 325 Query: 261 FFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 + + + + P F+ + KV+VP ++ N RSRSAKLR Sbjct: 326 VMKAGNPEGKVAQDFFGRIETP--FRPVNNKVIVPEDDEQQRNPRSRSAKLR 375 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 3/51 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRD 67 HVPVLL++ + LN PG + +D TFG GG+SR G+++ + D+D Sbjct: 9 HVPVLLKESVDGLNIRPGGIYVDVTFGGGGHSREILSRLTGGAHLYSFDQD 59 >gi|288925513|ref|ZP_06419446.1| S-adenosyl-methyltransferase MraW [Prevotella buccae D17] gi|288337729|gb|EFC76082.1| S-adenosyl-methyltransferase MraW [Prevotella buccae D17] Length = 393 Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 88/232 (37%), Positives = 130/232 (56%), Gaps = 8/232 (3%) Query: 85 FSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-S 140 F+ ++ F L++++ GVD G++ DLGVSS D RGFSF+ PLDMRM+ Sbjct: 161 FTFVRSNFRYLKNWMRYYGVDHIDGLLADLGVSSHHFDDETRGFSFRFDAPLDMRMNKRG 220 Query: 141 GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVY 200 G +A+D+VN+ + L + + GE K + RIA A+VK R +TTQD ++ Sbjct: 221 GRTAADIVNEYDENRLADVFYLYGELKNSRRIAAALVKARAQGRIETTQDFVQAVEPL-- 278 Query: 201 FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKK 260 F + + FQALRI VNNE+ L + L +A + LK GG L V+++HSLEDR+VK Sbjct: 279 FRREREKKDLAKLFQALRIEVNNEMTALKEMLLAATELLKPGGRLSVITYHSLEDRIVKN 338 Query: 261 FFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 + + + + P F+ + KV+VP ++ N RSRSAKLR Sbjct: 339 VMKAGNPEGKVAQDFFGRIETP--FRPVNNKVIVPEDDEQQRNPRSRSAKLR 388 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 3/50 (6%) Query: 21 VPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRD 67 +PVLL++ + LN PG + +D TFG GG+SR G+++ + D+D Sbjct: 1 MPVLLKESVDGLNIRPGGIYVDVTFGGGGHSREILSRLTGGAHLYSFDQD 50 >gi|94264627|ref|ZP_01288410.1| methyltransferase [delta proteobacterium MLMS-1] gi|93454922|gb|EAT05163.1| methyltransferase [delta proteobacterium MLMS-1] Length = 301 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 106/314 (33%), Positives = 156/314 (49%), Gaps = 35/314 (11%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M +AIH PVLLE+V+ L PA G +D G GG++ + ++ D Sbjct: 1 MEAAIHQ------PVLLEEVLHWLAPAAGGTYVDGNLGLGGHAAAILAASAPDGRLLGFD 54 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSM---QIDCGD 122 D A+ + + + + + FS+L+ + + + + L + Q+ G Sbjct: 55 WDQQALEQARRKLAPWGSRVITVRRNFSELEAVLAELAISKIDGLLLDLGLSSLQLAQGG 114 Query: 123 RGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSFQ PLDMRM G SA++++++ + +L I GEE+QA IA +V RQ Sbjct: 115 RGFSFQADEPLDMRMDQRGGESAAEMLHRLSAAELADIFYYYGEERQARPIAARVVAERQ 174 Query: 182 SAPFQTTQDLSSLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 ++ L+ L+ + V F N IH ATR FQALRI VN E+E L + L A L Sbjct: 175 RGMISSSGQLAELVAQAVPRRFHPRN-IHVATRVFQALRIAVNRELENLEKILAVAPPLL 233 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFAS-RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 AG V+SFHSLEDRLVK+ FA R +V+ T K V ++ Sbjct: 234 TAGARFCVISFHSLEDRLVKQAFAGDRRLRVL------------------TGKPVTAGEQ 275 Query: 299 DVAFNRRSRSAKLR 312 ++ N R+RSA+LR Sbjct: 276 ELGSNPRARSARLR 289 >gi|310658142|ref|YP_003935863.1| methyltransferase [Clostridium sticklandii DSM 519] gi|308824920|emb|CBH20958.1| Methyltransferase [Clostridium sticklandii] Length = 348 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 101/315 (32%), Positives = 159/315 (50%), Gaps = 32/315 (10%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFA---V 71 G H+ + + +++ PG++ DAT G GG++ K + + A D DP Sbjct: 49 GMHISIAVNEILEFFQIKPGQIGFDATLGYGGHTLEMLKCLEHQGCIFATDVDPIESQKT 108 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 E++ ++ + FS++ + G D ++ DLGVSSMQID DRGF++++ Sbjct: 109 KARLESLGYGEDMLKIRNMNFSEIDKISKEAGKFDFILADLGVSSMQIDNPDRGFTYKRE 168 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTT 188 GPLD+R++ GISA++ + + N ++ +L +E A I+ AI+KR + +TT Sbjct: 169 GPLDLRLNPEKGISAAERLKEMNQYEIEGMLLENSDEPHAEIISKAIIKRFEEGEKIETT 228 Query: 189 QDLSSLIQKTVYF--SKNNRIH---PATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 L LI+ T+ F SK+ R FQALRI VN E E L L L G Sbjct: 229 SQLRDLIEDTLSFIPSKDREQEIKKTCQRVFQALRIDVNQEFEVLYDFLEKLPAVLAPNG 288 Query: 244 LLIVVSFHSLEDRLVKKFFAS--RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 ++++SFHS EDRLVKK F + R G ++ I+ V+ P+ E+ Sbjct: 289 KVLIMSFHSGEDRLVKKSFKNYYREG----------------IYSEISTDVIRPSAEECN 332 Query: 302 FNRRSRSAKLRAGMR 316 N R+RS K+R +R Sbjct: 333 RNPRARSTKIRFAIR 347 >gi|331091351|ref|ZP_08340191.1| ribosomal RNA small subunit methyltransferase H 1 [Lachnospiraceae bacterium 2_1_46FAA] gi|330404512|gb|EGG84056.1| ribosomal RNA small subunit methyltransferase H 1 [Lachnospiraceae bacterium 2_1_46FAA] Length = 349 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 98/316 (31%), Positives = 164/316 (51%), Gaps = 32/316 (10%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF--CKMGS-NVIALDRDPFAVSC 73 +G H+ + +++++ L PG+ LDAT G GG++ C G ++ ALD D + Sbjct: 49 VGMHISICVKEILDFLQIQPGQRGLDATLGYGGHTLEMLKCLKGEGHLYALDVDTVESAK 108 Query: 74 GQETMRD--YKEQ-FSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQK 129 +E ++ Y E+ ++ F + + G D V+ DLGVSSMQID +RGF+++K Sbjct: 109 TKERLQKLGYGEEILTIKNINFRDIDKVCEEAGKFDFVLADLGVSSMQIDNPERGFTYKK 168 Query: 130 SGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI-VKRRQSAPFQT 187 GPLD+R++ G+SA++ + + +++L + +E A IA I K R+ T Sbjct: 169 EGPLDLRLNQKKGVSAAERLKEVTMEELEGMFVENADEPYAHEIAEKIFAKLRRGEAIDT 228 Query: 188 TQDLSSLIQKTVYFSKNNRIHPAT-----RSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 T L +I++ + F A R+FQALRI VN+E E L + + LK G Sbjct: 229 TTKLQQIIEEALKFIPEKERKEAVKKSCQRTFQALRIDVNSEFEVLYEFMEKLPNVLKEG 288 Query: 243 GLLIVVSFHSLEDRLVKKFFAS--RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300 G + +++FHS EDR+VK+ F R+G V+ I V+ P+ E+ Sbjct: 289 GRVAILTFHSGEDRIVKRAFKELKRAG----------------VYSDIANDVIRPSAEEC 332 Query: 301 AFNRRSRSAKLRAGMR 316 +N R++S K+R ++ Sbjct: 333 NYNSRAKSTKMRWAIK 348 >gi|68163389|ref|NP_001020152.1| hypothetical protein LOC295985 [Rattus norvegicus] gi|60551447|gb|AAH91215.1| Similar to RIKEN cDNA 0610027B03 [Rattus norvegicus] Length = 286 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 79/194 (40%), Positives = 113/194 (58%), Gaps = 11/194 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCGQET 77 H+PV++++V+ L P G+V LD TFG+GG+S++ + +V ALDRDP A + + Sbjct: 72 HIPVMVDEVVQCLTPQKGQVFLDMTFGSGGHSKAILQKEPDVTVYALDRDPVAFTLAERL 131 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 Y Q FSQ + + GV DGV+ DLG SSMQ+D +RGFS +K GP Sbjct: 132 SEMYPTQIHAMLGQFSQAETLLMKAGVQPGTVDGVLLDLGCSSMQLDAPERGFSLRKDGP 191 Query: 133 LDMRMSCSGI----SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM +A+DVVN + + L IL GEEK A +IA AI++ R + P T Sbjct: 192 LDMRMDGDRYPDMPTAADVVNALDQQALASILRAYGEEKHAKKIASAIIQARSTYPISRT 251 Query: 189 QDLSSLIQKTVYFS 202 Q L+S++ T++ S Sbjct: 252 QQLASIVAGTLFKS 265 >gi|145627903|ref|ZP_01783704.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae 22.1-21] gi|144979678|gb|EDJ89337.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae 22.1-21] Length = 223 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 89/216 (41%), Positives = 128/216 (59%), Gaps = 20/216 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQE 76 H+ VLL + + L + +D TFG GG+SR ++ SN +IA+DRDP A++ E Sbjct: 12 HITVLLHEAVNGLALKENGIYIDGTFGRGGHSRFILSQLSSNGRLIAVDRDPRAIA---E 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +F + +FS + + + DK ++G++ DLGVSS Q+D +RGFSF K G Sbjct: 69 AHKIQDSRFQIEHNSFSHIPE-ICDKLNLVGKINGILLDLGVSSPQLDEAERGFSFMKDG 127 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP------ 184 PLDMRM + G+SA + + Q +++DLT +L GEE+ A RIA AIV +SA Sbjct: 128 PLDMRMDTTQGLSAEEWLKQVSIEDLTWVLKTFGEERFAKRIATAIVDFNKSAVKNGTEF 187 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIF 220 T L+ LI + V F K+ HPATRSFQA+RIF Sbjct: 188 LSRTSQLAELISQAVPF-KDKHKHPATRSFQAIRIF 222 >gi|326792370|ref|YP_004310191.1| ribosomal RNA small subunit methyltransferase H [Clostridium lentocellum DSM 5427] gi|326543134|gb|ADZ84993.1| Ribosomal RNA small subunit methyltransferase H [Clostridium lentocellum DSM 5427] Length = 349 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 105/315 (33%), Positives = 163/315 (51%), Gaps = 32/315 (10%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCG 74 G H+ + +++++ L PG+ LDAT G GG++ K ++ ALD DP + Sbjct: 50 GMHISICVKEILEFLQIKPGQKGLDATLGYGGHTLEMLKCLEAKGHMYALDVDPIEIVKT 109 Query: 75 QETMRD--YKEQ-FSLFQATFSQLQDYVPDKGV-DGVVFDLGVSSMQIDCGDRGFSFQKS 130 ++ + D Y E+ ++ Q F + + G+ D ++ DLGVSSMQID DRGFSF+ Sbjct: 110 KKRLEDLGYGEEILTIKQLNFRDIDQVAAENGLFDFMLADLGVSSMQIDNPDRGFSFKYE 169 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTT 188 GPLD+R+ GISA++ + K+L +L +E A I+ AI+ + R+ TT Sbjct: 170 GPLDLRLDPEKGISAAERLKDMTQKELEGMLIENSDEPYAKEISEAIISKIRKKDYISTT 229 Query: 189 QDLSSLIQKTVYFSKNNRIHPAT-----RSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 L +I + + F ++ A R+FQALRI VN+E E L + L L GG Sbjct: 230 TKLQQVIGEALEFIPEDKRKEAIKKSCQRTFQALRIDVNSEFEVLEEFLEKLPNVLAKGG 289 Query: 244 LLIVVSFHSLEDRLVKKFFAS--RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 + +++FHS EDRLVKK F R G V+ I +V+ P+ E+ Sbjct: 290 RVAILTFHSGEDRLVKKSFKRLLREG----------------VYSEIATEVIRPSAEECN 333 Query: 302 FNRRSRSAKLRAGMR 316 N R+RS K+R ++ Sbjct: 334 MNGRARSTKMRWAIK 348 >gi|94266846|ref|ZP_01290506.1| methyltransferase [delta proteobacterium MLMS-1] gi|93452476|gb|EAT03075.1| methyltransferase [delta proteobacterium MLMS-1] Length = 301 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 106/314 (33%), Positives = 155/314 (49%), Gaps = 35/314 (11%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M +AIH PVLLE+V+ L PA G +D G GG++ + ++ D Sbjct: 1 MEAAIHQ------PVLLEEVLHWLAPAAGGTYVDGNLGLGGHAAAILAASAPDGRLLGFD 54 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSM---QIDCGD 122 D A+ + + + + + FS+L+ + + + + L + Q+ G Sbjct: 55 WDQQALEQARRKLAPWGSRVITVRRNFSELEAVLAELAISKIDGLLLDLGLSSLQLAQGG 114 Query: 123 RGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSFQ PLDMRM G SA++++++ + +L I GEE+QA IA +V RQ Sbjct: 115 RGFSFQADEPLDMRMDQRGKESAAELLHRLSAAELADIFYYYGEERQARPIAARVVAERQ 174 Query: 182 SAPFQTTQDLSSLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 ++ L+ L+ + V F N IH ATR FQALRI VN E+E L + L A L Sbjct: 175 RGMISSSGQLAELVAQAVPRRFHPRN-IHVATRVFQALRIAVNRELENLEKILAVAPPLL 233 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFAS-RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 AG V+SFHSLEDRLVK+ FA R +V+ T K V + Sbjct: 234 TAGARFCVISFHSLEDRLVKQAFAGDRRLRVL------------------TGKPVTAGDQ 275 Query: 299 DVAFNRRSRSAKLR 312 ++ N R+RSA+LR Sbjct: 276 ELGSNPRARSARLR 289 >gi|291534831|emb|CBL07943.1| S-adenosyl-methyltransferase MraW [Roseburia intestinalis M50/1] Length = 350 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 99/313 (31%), Positives = 163/313 (52%), Gaps = 28/313 (8%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF--CKMG-SNVIALDRDPFAVSCG 74 G H+ +++++++ L PG+ DAT G GG++++ C G ++ A D DP + Sbjct: 51 GMHISIMVQEILDTLKIQPGETGFDATLGYGGHTKAMLACLNGQGHIYATDVDPEESAKT 110 Query: 75 QETMRD--YKEQ-FSLFQATFSQLQDYVPD-KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 ++ + + Y E ++ F + + + G D ++ DLGVSSMQID RGFSF+ Sbjct: 111 KKRLEELGYGEDILTIRLQNFCTIDEIAKEVGGFDFILADLGVSSMQIDNPKRGFSFKVD 170 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTT 188 GPLD+R++ +GISA++ ++ ++L +L +E +A AI R+ TT Sbjct: 171 GPLDLRLNQEAGISAAERLDTITREELAGMLYENSDEPYCEELAKAITDEIRKGNRIDTT 230 Query: 189 QDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 L +I+KT+ F K+ R+FQALRI VN E E L + + ALK GG Sbjct: 231 TKLREVIEKTLDFLPEKEKKDTIKKTCQRTFQALRIDVNREFEVLYEFMEKLPDALKPGG 290 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 + +++FHS ED+LVKK + ++ +K VV P+ ++ A N Sbjct: 291 RVAILTFHSGEDKLVKK--------------ALKEGYRAGIYADYSKDVVRPSAQECAQN 336 Query: 304 RRSRSAKLRAGMR 316 R+RS K+R +R Sbjct: 337 GRARSTKMRWAVR 349 >gi|125580743|gb|EAZ21674.1| hypothetical protein OsJ_05305 [Oryza sativa Japonica Group] Length = 439 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 103/294 (35%), Positives = 139/294 (47%), Gaps = 43/294 (14%) Query: 62 IALDRDPFAVSCG---------------------QETMRDYK--EQFSLFQATFSQLQDY 98 I +D DP A+ G Q T+R Y + F + + + Sbjct: 141 IGMDVDPSALEIGRSRIEAFLANRETNGDDEDASQGTLRAYTHAKNFKYIKHVLGSVDEN 200 Query: 99 --VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKD 155 V GVDG++ DLG+SSMQ++ DRGFS + GPLDMRM + A D++N + Sbjct: 201 IAVGTSGVDGILIDLGMSSMQVNRSDRGFSVLQDGPLDMRMDPKATLKAEDILNSWPDLE 260 Query: 156 LTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS--KNNRIHPATRS 213 + RIL GEE + IVK R +T +L LIQ+T S + I ATR Sbjct: 261 VGRILRDYGEESNWQSLQKRIVKARAMGGLHSTGELVKLIQRTCTSSGGRQGWIKTATRV 320 Query: 214 FQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF-------ASRS 266 FQALRI VN+E+ L L + L G L V+SFHSLEDR+VK+ F Sbjct: 321 FQALRIAVNDELRTLEDALHACFDCLATDGRLAVISFHSLEDRIVKQTFLELIHEDEIDD 380 Query: 267 GKVMAVRHMIPSNAHPAVFQSI--------TKKVVVPTQEDVAFNRRSRSAKLR 312 + V I S P Q + TK+ + P+QE+ N+R RSAKLR Sbjct: 381 DEDDLVSADIDSEDEPWFKQRVQGKNGTILTKRPISPSQEEEELNQRCRSAKLR 434 >gi|291523548|emb|CBK81841.1| S-adenosyl-methyltransferase MraW [Coprococcus catus GD/7] Length = 352 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 99/314 (31%), Positives = 158/314 (50%), Gaps = 28/314 (8%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF--CKMGS-NVIALDRDPFAVSCG 74 G H+ +++++++ L PG+ LDAT G GG++ + C G ++ ALD D ++ Sbjct: 53 GMHISIMVQEILDFLQIQPGQRGLDATLGYGGHTSAMLRCLNGEGHLTALDVDAIEMAKT 112 Query: 75 QETMRDY---KEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E +R+ + ++ + F+ + + G D ++ DLGVSSMQID DRGFS++ Sbjct: 113 EERLRNQGFGPDILTVRKINFANIDEVAEKDGKFDFILADLGVSSMQIDNPDRGFSYKYD 172 Query: 131 GPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTT 188 GPLD+R+ G AS+ + + +L +E A+ IA +++ ++ P TT Sbjct: 173 GPLDLRLDQTKGEPASERLKHVTRDEFEGMLIENSDEPYAAEIASVVMQELKKGHPVDTT 232 Query: 189 QDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 L LI+K + K R+FQALRI VN+E E L L+ L GG Sbjct: 233 SKLRELIEKALVRVPAADRKEAVKKSCARTFQALRIDVNSEFEVLEAFLQKLPDVLNPGG 292 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 + V++FHS EDRLVKK F N ++ K V+ P+ E+ N Sbjct: 293 RVAVLTFHSGEDRLVKKSFK--------------ENVKAGIYSEAAKDVIRPSAEECRCN 338 Query: 304 RRSRSAKLRAGMRT 317 R+ S KLR +R+ Sbjct: 339 SRAHSTKLRWAVRS 352 >gi|225028745|ref|ZP_03717937.1| hypothetical protein EUBHAL_03024 [Eubacterium hallii DSM 3353] gi|224953936|gb|EEG35145.1| hypothetical protein EUBHAL_03024 [Eubacterium hallii DSM 3353] Length = 352 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 100/314 (31%), Positives = 165/314 (52%), Gaps = 29/314 (9%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF--CKMGS-NVIALDRDPFAVSCG 74 G H+ + +++++ L PG+ LD T G GG++R C G ++ LD DP + Sbjct: 53 GMHISICVQEILDFLQIQPGQKGLDCTLGYGGHTRKMLECLQGEGHIYGLDVDPIEIVKT 112 Query: 75 QETMRD--YKEQ-FSLFQATFSQLQDYVPDKGV-DGVVFDLGVSSMQIDCGDRGFSFQKS 130 + +R Y E ++ Q F + + G+ D V+ DLGVSSMQID +RGFS++ Sbjct: 113 TDRLRKAGYGEDILTIIQQNFRNIDLVAEEHGLFDFVLADLGVSSMQIDNPERGFSYKVE 172 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTT 188 GPLD+R++ GISA++ + + ++ +L +E A +IA I+K RQ TT Sbjct: 173 GPLDLRLNPDKGISAAERLRELTRDEIEGMLRENADEPYAEQIAKEIMKTFRQGEQIDTT 232 Query: 189 QDLSSLIQKTVYFSKNNRIHPAT------RSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 L +I++ + F +++ T R+FQALRI VN+E E L + L L G Sbjct: 233 GQLKEVIERALVFLPDDKEKKDTIKKTCQRTFQALRIDVNSEFEVLEEFLEKLPHILAPG 292 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G + +++FHS EDRLVKK + + + ++ + K V+ P++E+ Sbjct: 293 GRVAILTFHSGEDRLVKKIWKRQQKE--------------GLWSEVAKNVIRPSKEECHR 338 Query: 303 NRRSRSAKLRAGMR 316 N R+RS K+R ++ Sbjct: 339 NGRARSTKMRWAIK 352 >gi|240047424|ref|YP_002960812.1| S-adenosyl-L-methionine-dependent methyltransf [Mycoplasma conjunctivae HRC/581] gi|263458177|sp|C5J697|RSMH_MYCCR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|239984996|emb|CAT04989.1| S-adenosyl-L-methionine-dependent methyltransf [Mycoplasma conjunctivae] Length = 296 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 103/303 (33%), Positives = 157/303 (51%), Gaps = 24/303 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSNV-IALDRDPFAVSCGQET 77 H+PVL++ +I LN + +D T G GG++ + K+ + + I D+D A+ +E Sbjct: 2 HIPVLIDSLIENLNIREDGIYVDLTLGRGGHAAAILSKLTTGLLIVFDKDEKAIEESKER 61 Query: 78 MRDYK-------EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + E F F + Q Y VDG + DLGVSS QID G+RGFS+ K+ Sbjct: 62 LLAISKNVIFIWEDFRNFAVELEKRQIY----KVDGFIMDLGVSSPQIDQGERGFSYTKN 117 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM+ + + A VVN N LT++L GE K A + AI+ R P TT Sbjct: 118 ARLDMRMNQNQELDAHHVVNNYNQDLLTKVLQNYGELKNARSLTKAIIDSR---PINTTF 174 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 +L +LI+ + + + + FQA+RI VN+E+ L L LK + +++ Sbjct: 175 ELVNLIRSSSPAALLRKKNIVKNVFQAIRIEVNDELGALEAFLSLFISYLKQDSQVAIIT 234 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDR+VK F +S + + H+ A Q + K + P+ ++ N+RS+SA Sbjct: 235 FHSLEDRIVKMKF--KSLLISSKTHLFDPRA-----QQFSVKTIKPSTSEIQLNKRSKSA 287 Query: 310 KLR 312 KLR Sbjct: 288 KLR 290 >gi|224542006|ref|ZP_03682545.1| hypothetical protein CATMIT_01179 [Catenibacterium mitsuokai DSM 15897] gi|224525063|gb|EEF94168.1| hypothetical protein CATMIT_01179 [Catenibacterium mitsuokai DSM 15897] Length = 348 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 98/313 (31%), Positives = 164/313 (52%), Gaps = 28/313 (8%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCG 74 G H+ +++++++ L+ PG++ LD T G GG+S + ++ LD D + Sbjct: 48 GMHISIMVDEILEFLDIQPGQIGLDCTLGYGGHSSKMMEKLEGQGHLYGLDIDTIEIEKT 107 Query: 75 QETMRDYKEQFSLFQATFSQLQ--DYVPDK--GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 E +R+ +F + + D V +K D V+ DLGVSSMQID +RGFS++K+ Sbjct: 108 TERLRNKGYGEDIFTPILTNFRNIDQVSEKYGPFDFVLADLGVSSMQIDNPERGFSYKKN 167 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTT 188 GPLD+R++ +G A +++ + ++L IL +E A +A I R +TT Sbjct: 168 GPLDLRLNPKAGRPAYEILKDLSREELEHILTENSDEPYADILAKNIYSFIRSGMEVETT 227 Query: 189 QDLSSLIQKTVYF-SKNNRI----HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 Q L +I KT+ F + NR A R FQALRI VN E E L + LK GG Sbjct: 228 QQLYKIIDKTLSFVTDKNRKDIVNKTAARVFQALRIEVNQEFEVLYDFVEKLPLILKPGG 287 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 +++FHS EDR+VKK F ++++ +++ + + V+ P++E+ N Sbjct: 288 KAAILTFHSGEDRIVKKSFKE-------LKNL-------GIYEDVCRNVIRPSREECHRN 333 Query: 304 RRSRSAKLRAGMR 316 R++S K+R ++ Sbjct: 334 SRAKSTKMRWAIK 346 >gi|149193782|ref|ZP_01870880.1| S-adenosyl-methyltransferase MraW [Caminibacter mediatlanticus TB-2] gi|149135735|gb|EDM24213.1| S-adenosyl-methyltransferase MraW [Caminibacter mediatlanticus TB-2] Length = 302 Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 96/303 (31%), Positives = 158/303 (52%), Gaps = 17/303 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 HVPVLL + + L +D T G GG+S + + ++ I +D+D A++ + Sbjct: 5 HVPVLLNETVNLYKNIKKGYFIDCTLGFGGHSEAILEKYPHIKLIGIDQDIDALNFAKNR 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 ++ Y + S+ + + G++ D+GVSS Q+D +RGF+F S LDMRM Sbjct: 65 LKKYANRVEFINKRASEALSELKGLNIAGILADIGVSSFQLDNKERGFTFD-SNTLDMRM 123 Query: 138 SCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 + + SA DV+N + L I E ++ +IA I+K R P + ++LS ++ Sbjct: 124 NKNQEFSAKDVINFYDKNSLEEIFKKYAESRKYKKIADLIIKNR---PINSNKELSEILM 180 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 + +K + + P FQA+RI VNNE+ EL + L +E G +L +++FHSLEDR Sbjct: 181 QAGIKNKKD-LAPI---FQAIRIEVNNELNELEKILDLSEDIAIDGTILGIITFHSLEDR 236 Query: 257 LVKKFFASRSGKVM----AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 +VK F + + + A++ N + +TKK + + E++ N RSRSAKLR Sbjct: 237 IVKNRFKEWAKRCICPDEAIKCECGGNNQKG--KILTKKPITASNEEIKKNPRSRSAKLR 294 Query: 313 AGM 315 M Sbjct: 295 GFM 297 >gi|165377202|ref|NP_689849.2| probable methyltransferase-like protein 15 isoform 2 [Homo sapiens] gi|119588674|gb|EAW68268.1| methyltransferase 5 domain containing 1, isoform CRA_c [Homo sapiens] Length = 273 Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 76/187 (40%), Positives = 112/187 (59%), Gaps = 11/187 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCGQET 77 H+PV++++V+ L+P G++ LD TFG+GG++++ + S+++ ALDRDP A + + Sbjct: 72 HIPVMVDEVVHCLSPQKGQIFLDMTFGSGGHTKAILQKESDIVLYALDRDPTAYALAEHL 131 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 Y +Q FSQ + + GV DGV+ DLG SSMQ+D +RGFS +K GP Sbjct: 132 SELYPKQIRAMLGQFSQAEALLMKAGVQPGTFDGVLMDLGCSSMQLDTPERGFSLRKDGP 191 Query: 133 LDMRMSCSGI----SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM +A+DVVN + + L IL GEEK A +IA AIV+ R P T Sbjct: 192 LDMRMDGGRYPDMPTAADVVNALDQQALASILRTYGEEKHAKKIASAIVQARSIYPITRT 251 Query: 189 QDLSSLI 195 Q L+S++ Sbjct: 252 QQLASIV 258 >gi|118594404|ref|ZP_01551751.1| methyltransferase [Methylophilales bacterium HTCC2181] gi|118440182|gb|EAV46809.1| methyltransferase [Methylophilales bacterium HTCC2181] Length = 213 Score = 139 bits (350), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 90/215 (41%), Positives = 127/215 (59%), Gaps = 6/215 (2%) Query: 109 FDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEK 167 DLG+SS Q+D +RGFSF+ G LDMRM+ + +A+D+VN + +L IL + GEE+ Sbjct: 1 MDLGISSPQVDNAERGFSFRLDGQLDMRMNQDHLETAADIVNSYDEAELIYILKVYGEER 60 Query: 168 QASRIAHAIVKRRQS-APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIE 226 A RIA +IV R + T L+ +I K V + + PATR+FQALRI VN EIE Sbjct: 61 FAKRIARSIVAHRADVGRIEKTIQLAQIINKAVPKREPGK-DPATRTFQALRIKVNQEIE 119 Query: 227 ELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ 286 E+ + L A L G + V+SFHSLEDR+VK FA + + + IP A Sbjct: 120 EIEKALPIAFDLLNKNGRIAVISFHSLEDRVVKN-FAKQQLETDLIPKYIPIKASEIRKS 178 Query: 287 SITK--KVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319 ++ K K+++P++ ++ N RSRSAKLR R E Sbjct: 179 NLKKIGKLIIPSEIEIKENPRSRSAKLRVIERIEE 213 >gi|291528759|emb|CBK94345.1| S-adenosyl-methyltransferase MraW [Eubacterium rectale M104/1] Length = 349 Score = 139 bits (349), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 95/313 (30%), Positives = 166/313 (53%), Gaps = 28/313 (8%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCG 74 G H+ ++++++I L+ PG+ DAT G GG++R+ + ++ A D DP Sbjct: 49 GMHISIMVKEIIDFLDIKPGQTGFDATLGYGGHTRAMLEKLEGHGHMFATDVDPIESEKT 108 Query: 75 QETMRDY---KEQFSLFQATFSQLQDYVPD-KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 ++ + + ++ ++ F + + + G D ++ DLGVSSMQID +RGFSF+ Sbjct: 109 KKRLAEAGFGEDILTIKLQNFCTIDEIAKEVGGFDFILADLGVSSMQIDNPERGFSFKVD 168 Query: 131 GPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTT 188 GPLD+R++ +GISA++ ++ + ++L+ +L +E +A AI R+ TT Sbjct: 169 GPLDLRLNPNAGISAAERLDNISREELSGMLYENSDEPYCEELAKAITDEIRKGNRIDTT 228 Query: 189 QDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 L +I++T+ F K+ R+FQALRI VN+E E L + + ALK GG Sbjct: 229 TKLRHIIEQTLDFLPEKDKKDIIKKTCQRTFQALRIDVNHEFEVLYEFMEKLPGALKPGG 288 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 +++FHS ED+LVKK + + ++ +K V+ P+ ++ A N Sbjct: 289 RAAILTFHSGEDKLVKK--------------ALKAGYKAGIYSDYSKDVIRPSAQECAQN 334 Query: 304 RRSRSAKLRAGMR 316 R+RS K+R +R Sbjct: 335 GRARSTKMRWAVR 347 >gi|257458736|ref|ZP_05623859.1| S-adenosyl-methyltransferase MraW [Campylobacter gracilis RM3268] gi|257443724|gb|EEV18844.1| S-adenosyl-methyltransferase MraW [Campylobacter gracilis RM3268] Length = 311 Score = 138 bits (348), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 104/306 (33%), Positives = 165/306 (53%), Gaps = 17/306 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 H+PVL + IA + ++D T G GG+S ++ IA DRD A+ +E Sbjct: 5 HIPVLFSQTIAAFSQLEDGYVIDCTLGYGGHSEGILTANPHLKLIACDRDAEAIEFSRER 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + +K++ + +A FS++ +P+ + V G++ D+GVSS+Q+D RGFS KS LD Sbjct: 65 LSKFKDRIEIHKAKFSEILKILPEQKLRAVRGILADIGVSSLQLDKNCRGFS-TKSDALD 123 Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM S + A+ VVN+ + DL RI GE A+ IA I R +AP + + L++ Sbjct: 124 MRMDESAALDAAYVVNRYSQADLARIFREYGELTNANAIAAKIATARTNAPLTSAKALAN 183 Query: 194 LI-QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK----ALKAGGLLIVV 248 LI K V K I AT +FQA+RI VN+E+ EL + L E+ ++ + ++ Sbjct: 184 LIGTKPV---KGRSISTATLAFQAIRIEVNDELGELKRLLTLIEQKSRDSILTNATVAII 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 SFHSLEDR+VK+ F + + + ++ + +TK + +++A N R+ Sbjct: 241 SFHSLEDRIVKEQFKAWERDCVCPSEFMRCECGGDHSLGKILTKSPLTADAQELAQNSRA 300 Query: 307 RSAKLR 312 SAKLR Sbjct: 301 ASAKLR 306 >gi|323452900|gb|EGB08773.1| mraW bacterial methyltransferase-like protein [Aureococcus anophagefferens] Length = 357 Score = 138 bits (348), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 107/318 (33%), Positives = 161/318 (50%), Gaps = 31/318 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H PV+ + + L +D T G GG+S K+G ++ +DRD A+ + Sbjct: 46 HTPVMGNECVDWLVTKRDGFYVDGTLGGGGHSSLILAKLGDGGRLVGVDRDAAAIEAAGD 105 Query: 77 TMRDYKEQFSLFQATF-SQLQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + +FS A + + ++ V G DGV+ DLGVSS Q+D RGFSF+ GP+ Sbjct: 106 RLA-ADGRFSSVHANYDAGVRRAVEAAGRKADGVLLDLGVSSRQLDDAARGFSFRGDGPI 164 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM G +ASD+VN + +DL +L +E A R+A A+V R P +T + Sbjct: 165 DMRMDGRDGTTASDLVNGLDERDLAFLLRANADEPNAGRVARALVAAR---PLGSTT--A 219 Query: 193 SLIQKTVYFSKNNRIHPA----------TRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 + R PA R+FQALR+ VN+E L + L + G Sbjct: 220 LADAVAAAVPRQKRSAPAAHAQAQKKAVARAFQALRVEVNDEFGALERLLLDLPALVAEG 279 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHP---AVFQSITKKVVVPTQED 299 G ++V+++HSLEDR VK+ F R G+ +R P + + A F + +K + P++ + Sbjct: 280 GRVVVLTYHSLEDRRVKRIF--RDGR---LRGDAPRDDYGNKLAPFAPLHRKALPPSEGE 334 Query: 300 VAFNRRSRSAKLRAGMRT 317 V N R+RSAKLRA RT Sbjct: 335 VERNPRARSAKLRAAERT 352 >gi|78776996|ref|YP_393311.1| S-adenosyl-methyltransferase MraW [Sulfurimonas denitrificans DSM 1251] gi|123550493|sp|Q30SF5|RSMH_SULDN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|78497536|gb|ABB44076.1| methyltransferase [Sulfurimonas denitrificans DSM 1251] Length = 307 Score = 138 bits (348), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 102/305 (33%), Positives = 166/305 (54%), Gaps = 19/305 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 HVPVL +V+ +++D T G GG++ N+ IA+D+D A+ + Sbjct: 6 HVPVLYREVLEQFKNIKNGIVIDCTMGYGGHTSLILDANPNIKLIAIDQDQSAIDFSTKR 65 Query: 78 MRDYKEQFSLFQATFSQ-----LQDY-VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y ++ + + FS L++Y + D + G++ D+GVSS+Q+D +RGFSF S Sbjct: 66 LEPYGDRVVIKKGRFSTIIKEILKEYDISD--IRGILADIGVSSLQLDKKERGFSF-FSE 122 Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM ++A+ V+N+ + +L R+L GE + +IA IV R PF + ++ Sbjct: 123 NLDMRMDEDAPLNANIVINEYSSHELQRVLLEYGELRNYKQIASFIVSNR---PFYSAKE 179 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 LS ++ + K +IHPAT QA+RI VNNE+ EL L + ++ + ++SF Sbjct: 180 LSDALRHLMPSGK--KIHPATLLMQAIRIEVNNELGELESLLDTIQERKFLDTKVAIISF 237 Query: 251 HSLEDRLVK-KFFASRSGKVMAVRHMIPSNAHPAVFQSI-TKKVVVPTQEDVAFNRRSRS 308 HSLEDR+VK +F R+ + M + + +I TKK ++ +++ N RSRS Sbjct: 238 HSLEDRIVKNRFNEWRASCICPQEAMRCTCTNDNSLGNILTKKPIIAQMDEIQANPRSRS 297 Query: 309 AKLRA 313 AKLR Sbjct: 298 AKLRV 302 >gi|291523776|emb|CBK89363.1| S-adenosyl-methyltransferase MraW [Eubacterium rectale DSM 17629] Length = 349 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 95/313 (30%), Positives = 166/313 (53%), Gaps = 28/313 (8%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCG 74 G H+ ++++++I L+ PG+ DAT G GG++R+ + ++ A D DP Sbjct: 49 GMHISIMVKEIIDFLDIKPGQTGFDATLGYGGHTRAMLEKLEGQGHMFATDVDPIESEKT 108 Query: 75 QETMRDY---KEQFSLFQATFSQLQDYVPD-KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 ++ + + ++ ++ F + + + G D ++ DLGVSSMQID +RGFSF+ Sbjct: 109 KKRLAEAGFGEDILTIKLQNFCTIDEIAKEVGGFDFILADLGVSSMQIDNPERGFSFKVD 168 Query: 131 GPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTT 188 GPLD+R++ +GISA++ ++ + ++L+ +L +E +A AI R+ TT Sbjct: 169 GPLDLRLNPNAGISAAERLDNISREELSGMLYENSDEPYCEELAKAITDEIRKGNRIDTT 228 Query: 189 QDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 L +I++T+ F K+ R+FQALRI VN+E E L + + ALK GG Sbjct: 229 TKLRHIIEQTLDFLPEKDKKDIIKKTCQRTFQALRIDVNHEFEVLYEFMEKLPGALKPGG 288 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 +++FHS ED+LVKK + + ++ +K V+ P+ ++ A N Sbjct: 289 RAAILTFHSGEDKLVKK--------------ALKAGYKAGIYSDYSKDVIRPSAQECAQN 334 Query: 304 RRSRSAKLRAGMR 316 R+RS K+R +R Sbjct: 335 GRARSTKMRWAVR 347 >gi|85057932|ref|YP_456848.1| hypothetical protein AYWB_652 [Aster yellows witches'-broom phytoplasma AYWB] gi|84790037|gb|ABC65769.1| conserved hypothetical protein [Aster yellows witches'-broom phytoplasma AYWB] Length = 202 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 84/210 (40%), Positives = 119/210 (56%), Gaps = 10/210 (4%) Query: 111 LGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQA 169 +G+SS QID RGFS+ + PLDMRM+ + I+A ++N + L I + GE K A Sbjct: 1 MGLSSCQIDNPQRGFSYLHNTPLDMRMNINQTITAQYILNNYSFAQLKNIFKLYGEVKNA 60 Query: 170 SRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELA 229 S + I+K+R P QT+ DL S+ + K H A + FQALRI VN E+E L Sbjct: 61 SLVVSEIIKQR---PLQTSYDLVSITDRFCNLQKG---HSAKKIFQALRIEVNQELESLK 114 Query: 230 QGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-FQSI 288 Q L + LK ++V+SFHSLEDR++K FF S V+ + +P P I Sbjct: 115 QALEQSLDLLKPNARIVVISFHSLEDRIIKHFFKKHSTFVLPKK--LPIAIIPQTPLSII 172 Query: 289 TKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318 TKK +P++E++ N RS SAKLR ++ V Sbjct: 173 TKKAFLPSEEEMQNNSRSISAKLRVAVKNV 202 >gi|307128732|ref|YP_003880762.1| S-adenosyl-methyltransferase MraW [Candidatus Sulcia muelleri CARI] gi|306483194|gb|ADM90064.1| S-adenosyl-methyltransferase MraW [Candidatus Sulcia muelleri CARI] Length = 306 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 100/301 (33%), Positives = 166/301 (55%), Gaps = 17/301 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H PVLL++ + LL + +D TFG GG+S S K +N +IA D+D +++ + Sbjct: 9 HNPVLLDETLTLLVKEIDGIYIDTTFGGGGHSFSLLKKLNNKGRLIAFDQDIYSIK--KN 66 Query: 77 TMRDYKEQFSLFQATF----SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + D +F+L + + L+ Y +K V G++ DLG+SS QI+ RGFS + + Sbjct: 67 NIID--TRFNLVKTNYIFIKKILKRYNLNK-VSGILADLGISSHQINTPKRGFSIRSNSI 123 Query: 133 LDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + I+A ++N + +L I I G+ K + +A I+K+R+ + T DL Sbjct: 124 LDMRMDTFKKINAKYIINNYSYNELYNIFKIYGDRKNSKFLAKLIIKQRKKKIIKYTFDL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++++ +F K ++ FQ+LRI VN+EI L L ++ LK GG + V+S+H Sbjct: 184 INILK--FFFKKKIENKFLSKIFQSLRIEVNDEINALKYLLNNSLSILKPGGRIAVISYH 241 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 S+EDR+VKKF + + + +N P + + K + ++E++ N RSRSA L Sbjct: 242 SIEDRIVKKFLKTGNFNGVVSYDGYGNNLSPLIL--LKPKRIFSSKEEIKKNNRSRSAIL 299 Query: 312 R 312 R Sbjct: 300 R 300 >gi|238922879|ref|YP_002936392.1| methyltransferase [Eubacterium rectale ATCC 33656] gi|263433286|sp|C4ZBW8|RSMH1_EUBR3 RecName: Full=Ribosomal RNA small subunit methyltransferase H 1; AltName: Full=16S rRNA m(4)C1402 methyltransferase 1; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH 1 gi|238874551|gb|ACR74258.1| methyltransferase [Eubacterium rectale ATCC 33656] Length = 349 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 95/313 (30%), Positives = 166/313 (53%), Gaps = 28/313 (8%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCG 74 G H+ ++++++I L+ PG+ DAT G GG++R+ + ++ A D DP Sbjct: 49 GMHISIMVKEIIDFLDIKPGQTGFDATLGYGGHTRAMLEKLEGQGHMFATDVDPIESEKT 108 Query: 75 QETMRDY---KEQFSLFQATFSQLQDYVPD-KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 ++ + + ++ ++ F + + + G D ++ DLGVSSMQID +RGFSF+ Sbjct: 109 KKRLAEAGFGEDILTIKLQNFCTIDEIAKEVGGFDFILADLGVSSMQIDNPERGFSFKVD 168 Query: 131 GPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTT 188 GPLD+R++ +GISA++ ++ + ++L+ +L +E +A AI R+ TT Sbjct: 169 GPLDLRLNPNAGISAAERLDNISREELSGMLYENSDEPYCEELAKAITDEIRKGNRIGTT 228 Query: 189 QDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 L +I++T+ F K+ R+FQALRI VN+E E L + + ALK GG Sbjct: 229 TKLRHIIEQTLDFLPEKDKKDIIKKTCQRTFQALRIDVNHEFEVLYEFMEKLPGALKPGG 288 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 +++FHS ED+LVKK + + ++ +K V+ P+ ++ A N Sbjct: 289 RAAILTFHSGEDKLVKK--------------ALKAGYKAGIYSDYSKDVIRPSAQECAQN 334 Query: 304 RRSRSAKLRAGMR 316 R+RS K+R +R Sbjct: 335 GRARSTKMRWAVR 347 >gi|322379450|ref|ZP_08053820.1| S-adenosyl-methyltransferase MraW [Helicobacter suis HS1] gi|322380939|ref|ZP_08055005.1| S-adenosyl-methyltransferase MraW [Helicobacter suis HS5] gi|321146611|gb|EFX41445.1| S-adenosyl-methyltransferase MraW [Helicobacter suis HS5] gi|321148159|gb|EFX42689.1| S-adenosyl-methyltransferase MraW [Helicobacter suis HS1] Length = 303 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 102/302 (33%), Positives = 161/302 (53%), Gaps = 33/302 (10%) Query: 20 HVPVLLEKVIALLNPA----PGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSC 73 H VLLE+V+A+ V++D T G GG++ + + N V+ ++RD A Sbjct: 21 HQSVLLEEVVAIFQEVIQSHSEPVLIDCTLGLGGHTLALLQTYPNLRVVGIERDKEASEQ 80 Query: 74 GQETMRDYKEQFSLFQATFSQ-LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + + +FS F+ L + + + GV+ DLGVSS+Q+D DRGFSF + Sbjct: 81 ALEKLTPFAHRFSFKSGNFATILPSLLKENRICGVLADLGVSSLQLDHLDRGFSFN-APT 139 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + AS V+N + L +IL GE ++A+ IV+ R PF + +D Sbjct: 140 LDMRMDIDQSLDASKVINTYSAYALEKILQA-GEVYAPKKMANLIVQNR---PFYSAKDF 195 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + I + S++++ HPAT FQA+R+ VN+E+ L Q L + +A ++ ++SFH Sbjct: 196 ADFISQ---HSRHSKHHPATLIFQAIRMEVNSEMHNLDQLLECVQSLKEA--IVCIISFH 250 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR VK F + N +F KK ++P+++ + NRR+RSAK+ Sbjct: 251 SLEDRKVKHAFKEWA-----------QNRGVLLF----KKPIIPSKKAIQENRRARSAKM 295 Query: 312 RA 313 RA Sbjct: 296 RA 297 >gi|323485088|ref|ZP_08090441.1| hypothetical protein HMPREF9474_02192 [Clostridium symbiosum WAL-14163] gi|323401644|gb|EGA93989.1| hypothetical protein HMPREF9474_02192 [Clostridium symbiosum WAL-14163] Length = 348 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 104/318 (32%), Positives = 162/318 (50%), Gaps = 36/318 (11%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF--CKMGS-NVIALDRDPFAVSC 73 +G H+ + +++++ L PG+ LDAT G GG++++ C G ++ LD D + Sbjct: 48 VGMHISICVKEILEFLQIQPGQKGLDATLGYGGHTQAILECLQGKGHIYGLDVD----AV 103 Query: 74 GQETMRDY-------KEQFSLFQATFSQLQDYVPDKGV-DGVVFDLGVSSMQIDCGDRGF 125 QE R E ++ + F+ + + G D V+ DLGVSSMQID DRGF Sbjct: 104 EQEKTRKRLEALGYGPELLTVRKLNFANIDQVAAEAGTFDFVLADLGVSSMQIDNPDRGF 163 Query: 126 SFQKSGPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK-RRQSA 183 S++ GPLD+R+ S GISA++ + + ++L +L +E A+ I+ A++ RR+ Sbjct: 164 SYKNEGPLDLRLDSEKGISAAERLKDISREELEGMLAENSDEPYAAEISRAVISARRKGT 223 Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPAT-----RSFQALRIFVNNEIEELAQGLRSAEKA 238 TT L LI++ + F A R+FQALRI VN+E E L + L Sbjct: 224 AIDTTTKLRRLIEEALSFLPEGERKEAVKKSCQRTFQALRIDVNSEFEVLEEFLEKLPDI 283 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L GG +++FHS EDRLVKK F + V+ I +V+ PT E Sbjct: 284 LSPGGRAAILTFHSGEDRLVKKSFKRLKKQ--------------GVYSEIADEVIRPTAE 329 Query: 299 DVAFNRRSRSAKLRAGMR 316 + N R+RS K+R ++ Sbjct: 330 ECNMNSRARSTKMRWAVK 347 >gi|321310206|ref|YP_004192535.1| rRNA small subunit methyltransferase H [Mycoplasma haemofelis str. Langford 1] gi|319802050|emb|CBY92696.1| rRNA small subunit methyltransferase H [Mycoplasma haemofelis str. Langford 1] Length = 301 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 91/300 (30%), Positives = 165/300 (55%), Gaps = 23/300 (7%) Query: 26 EKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK 82 ++V++ L + + LD TFGAGG+SR S +I LD D AV G++ ++ Sbjct: 3 DEVVSYLLGSKDGLYLDCTFGAGGHSRQLLSKISSQSKLIGLDIDSVAVEMGKKLEQE-D 61 Query: 83 EQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS- 138 ++FS+ + F++L DY + + G++FDLG S MQ+ RGFS+ + LDMRM Sbjct: 62 DRFSMVRLNFARLSDYQKENNLPKARGIIFDLGTSMMQLRDPSRGFSYLEDAHLDMRMDQ 121 Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK-RRQSAPFQTTQDLSSLIQK 197 S +A+D++N + L I G+ + R+ + I R++ + +TT + LI++ Sbjct: 122 TSKTTAADILNYGSRMQLKDIFRKYGDIHNSDRLINLISDHRKKYSCIETTLEFRDLIEE 181 Query: 198 TVYFSKNNRIHPA------TRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ P +R+FQA+RI VN+EI+ + S + L+ GG+ +++FH Sbjct: 182 A-----HKKLDPVRLRKEISRTFQAIRIAVNDEIKSFEMAMNSLHEVLEVGGVACIITFH 236 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 S E+ ++K + S+ + +R + + F+ ++ +VPT++++A NR SRS+KL Sbjct: 237 SGEEDVLKT-WKSKYCDHIEIRDYSKNMVNK--FRFVSNGYIVPTEKEIAENRSSRSSKL 293 >gi|21749636|dbj|BAC03631.1| unnamed protein product [Homo sapiens] Length = 273 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 75/187 (40%), Positives = 112/187 (59%), Gaps = 11/187 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCGQET 77 H+PV++++V+ L+P G++ LD TFG+GG++++ + S+++ ALDRDP A + + Sbjct: 72 HIPVMVDEVVHCLSPQKGQIFLDMTFGSGGHTKAILQKESDIVLYALDRDPTAYALAEHL 131 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 Y +Q FSQ + + GV DGV+ DLG SSMQ+D +RGFS +K GP Sbjct: 132 SELYPKQIRAMLGQFSQAEALLMKAGVQPGTFDGVLMDLGCSSMQLDTPERGFSLRKDGP 191 Query: 133 LDMRMSCSGI----SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LD+RM +A+DVVN + + L IL GEEK A +IA AIV+ R P T Sbjct: 192 LDVRMDGGRYPDMPTAADVVNALDQQALASILRTYGEEKHAKKIASAIVQARSIYPITRT 251 Query: 189 QDLSSLI 195 Q L+S++ Sbjct: 252 QQLASIV 258 >gi|283797253|ref|ZP_06346406.1| S-adenosyl-methyltransferase MraW [Clostridium sp. M62/1] gi|291075103|gb|EFE12467.1| S-adenosyl-methyltransferase MraW [Clostridium sp. M62/1] gi|295092386|emb|CBK78493.1| S-adenosyl-methyltransferase MraW [Clostridium cf. saccharolyticum K10] Length = 383 Score = 137 bits (345), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 95/315 (30%), Positives = 161/315 (51%), Gaps = 32/315 (10%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCG 74 G H+ + +++++ + PG+V LDAT G GG++R K ++ LD DP Sbjct: 84 GMHISICVKEILDFFDIRPGQVGLDATLGYGGHTREMLKKLQGQGHIYGLDVDPIESEKT 143 Query: 75 QETMRDY---KEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 ++ + D + ++ F+ + + G D ++ DLGVSSMQID +RGF+++ Sbjct: 144 KKRLADAGFGPDILTVKLMNFADIDKVAEEAGPFDFILADLGVSSMQIDNPERGFTYKYE 203 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTT 188 GPLD+RM + G +A++ + + ++ +L +E A I+H + R ++ TT Sbjct: 204 GPLDLRMDPTRGETAAERLKGMDREEFCGMLMENSDEPYAEEISHTVFSRLKRGGRIDTT 263 Query: 189 QDLSSLIQKTVYFSKNNRIHPA-----TRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 L +++ + F A R+FQALRI VN+E E L L ALK+GG Sbjct: 264 TQLREAVEEALSFLPEKERKEAVKKSCARTFQALRIDVNSEFEVLYAFLEKLPSALKSGG 323 Query: 244 LLIVVSFHSLEDRLVKKFFAS--RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 +++FHS EDRLVKK F R+G ++ I ++V+ P+ E+ A Sbjct: 324 KAAILTFHSGEDRLVKKSFREYKRAG----------------LYSEIAQEVIRPSAEECA 367 Query: 302 FNRRSRSAKLRAGMR 316 N R++S K+R ++ Sbjct: 368 RNSRAKSTKMRWAVK 382 >gi|304163|gb|AAC36835.1| Putative product of orfB has significant sequence identity to putative product of orfB sequence upstream of pbpB gene in E.coli. putative [Bacillus subtilis] Length = 204 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 81/199 (40%), Positives = 118/199 (59%), Gaps = 5/199 (2%) Query: 118 IDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 +D +RGFS+ PLDMRM S +SA +VVN+ +DL RI GEEK + +IA I Sbjct: 1 LDTPERGFSYHHDAPLDMRMDQSATLSAKEVVNEWRYEDLVRIFFKYGEEKFSKQIARKI 60 Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 + R +P QTT L LI+ + ++ + HPA R FQA+RI VN+E+ + L A Sbjct: 61 EEARMKSPIQTTGQLVDLIKDAIPAPARRSGGHPAKRVFQAIRIAVNDELRVFEEALEQA 120 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVV 293 + LK GG + V++FHSLEDR+ K F +S ++ +IP P + + IT+K + Sbjct: 121 IEVLKPGGRVSVITFHSLEDRICKTTFKEKSSLPELPPGLPVIPEEFEPEL-KLITRKPI 179 Query: 294 VPTQEDVAFNRRSRSAKLR 312 +QE++ N R+RSAKLR Sbjct: 180 TASQEELEENNRARSAKLR 198 >gi|323693536|ref|ZP_08107740.1| S-adenosyl-methyltransferase MraW [Clostridium symbiosum WAL-14673] gi|323502391|gb|EGB18249.1| S-adenosyl-methyltransferase MraW [Clostridium symbiosum WAL-14673] Length = 348 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 103/318 (32%), Positives = 162/318 (50%), Gaps = 36/318 (11%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF--CKMGS-NVIALDRDPFAVSC 73 +G H+ + +++++ L PG+ LDAT G GG++++ C G ++ LD D + Sbjct: 48 VGMHISICVKEILEFLQIQPGQKGLDATLGYGGHTQAMLECLQGKGHIYGLDVD----AV 103 Query: 74 GQETMRDY-------KEQFSLFQATFSQLQDYVPDKGV-DGVVFDLGVSSMQIDCGDRGF 125 QE R E ++ + F+ + + G D V+ DLGVSSMQID DRGF Sbjct: 104 EQEKTRKRLEALGYGPELLTVRKLNFANIDQVAAEVGTFDFVLADLGVSSMQIDNPDRGF 163 Query: 126 SFQKSGPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK-RRQSA 183 S++ GPLD+R+ S GISA++ + + ++L +L +E A+ I+ A++ RR+ Sbjct: 164 SYKNEGPLDLRLDSEKGISAAERLKDISREELEGMLAENSDEPYAAEISRAVISARRKGT 223 Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPAT-----RSFQALRIFVNNEIEELAQGLRSAEKA 238 TT L L+++ + F A R+FQALRI VN+E E L + L Sbjct: 224 AIDTTTKLRRLVEEALSFLPEGERKEAVKKSCQRTFQALRIDVNSEFEVLEEFLEKLPDI 283 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L GG +++FHS EDRLVKK F + V+ I +V+ PT E Sbjct: 284 LSPGGRAAILTFHSGEDRLVKKSFKRLKKQ--------------GVYSEIADEVIRPTAE 329 Query: 299 DVAFNRRSRSAKLRAGMR 316 + N R+RS K+R ++ Sbjct: 330 ECNMNSRARSTKMRWAVK 347 >gi|253577924|ref|ZP_04855196.1| MraW methylase MraW [Ruminococcus sp. 5_1_39B_FAA] gi|251850242|gb|EES78200.1| MraW methylase MraW [Ruminococcus sp. 5_1_39BFAA] Length = 351 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 95/313 (30%), Positives = 163/313 (52%), Gaps = 28/313 (8%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF--CKMG-SNVIALDRDPFAVSCG 74 G H+ +++++++ LN PG+ DAT G GG++++ C G ++ A D DP + Sbjct: 51 GMHISIMVKEILDFLNIQPGETGFDATLGYGGHTKAMLQCLNGKGHIYATDVDPEESAKT 110 Query: 75 QETMRDY---KEQFSLFQATFSQLQDYVPD-KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 ++ + + +E ++ F + + + G D ++ DLGVSSMQID RGFSF+ Sbjct: 111 KKRLAEQGFGEELLTVKLQNFCTIDEIAKEVGGFDFILADLGVSSMQIDNPKRGFSFKTD 170 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTT 188 GPLD+R++ +GISA+ ++ + ++L +L +E +A AI R+ TT Sbjct: 171 GPLDLRLNQETGISAAQRLDTISREELAGMLCENSDEPYCEELAKAITDEIRRGNHIDTT 230 Query: 189 QDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 L +I+KT+ F K R+FQALRI VN+E E L + + AL+ GG Sbjct: 231 TKLRQVIEKTLDFLPEKEKKETIKKTCQRTFQALRIDVNHEFEVLYEFMEKLPDALRPGG 290 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 + +++FHS ED+LVKK + + ++ K V+ P+ ++ N Sbjct: 291 RVAILTFHSGEDKLVKK--------------ALKAGYKDGIYSDYAKDVIRPSAKECTQN 336 Query: 304 RRSRSAKLRAGMR 316 R+RS K+R ++ Sbjct: 337 PRARSTKMRWAIK 349 >gi|301633398|gb|ADK86952.1| S-adenosyl-methyltransferase MraW [Mycoplasma pneumoniae FH] Length = 308 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 97/300 (32%), Positives = 157/300 (52%), Gaps = 12/300 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H VLL++VI LN LD T G GG+S+ + + + D D +++ E Sbjct: 7 HKSVLLDEVIHNLNIKGDGNYLDLTVGFGGHSQHILEQLTTGTLTGNDMDKDSITFCTEL 66 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 +D K+ L F+ +++ V DG++ DLGVSS Q+D +RGFSF+ +GP D Sbjct: 67 FKD-KKNVVLVHDNFANFFNHLKQLKVTKFDGILIDLGVSSYQLDKPERGFSFKHAGPFD 125 Query: 135 MRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 MRM S +A D++ + + ++LT +L GE IA A+ + TT +++ Sbjct: 126 MRMHQSDRVPTALDILERLSEEELTHVLKKFGEIAHPKPIAKALKTLINNIKNPTTVEVA 185 Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++ F K + + FQA+RI++N E+E L L+ K L G +V+ FH Sbjct: 186 ETVKAAASNFEKYKSRNYLAKVFQAIRIYLNRELESLEIVLQHIPKLLNNKGRFLVIVFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLE++LV+ + + V +P P F+ ITKK ++PT++++ N R+RSAKL Sbjct: 246 SLEEKLVRNYIFKLTHFVQPPE--LPVKLTPP-FELITKKPILPTEQEIKTNPRARSAKL 302 >gi|150391505|ref|YP_001321554.1| S-adenosyl-methyltransferase MraW [Alkaliphilus metalliredigens QYMF] gi|263433292|sp|A6TUM7|RSMH2_ALKMQ RecName: Full=Ribosomal RNA small subunit methyltransferase H 2; AltName: Full=16S rRNA m(4)C1402 methyltransferase 2; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH 2 gi|149951367|gb|ABR49895.1| S-adenosyl-methyltransferase MraW [Alkaliphilus metalliredigens QYMF] Length = 349 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 102/315 (32%), Positives = 160/315 (50%), Gaps = 32/315 (10%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCG 74 G H + + +++ L PG+ LDAT G GG++ K ++ A+D D + Sbjct: 50 GMHRSICVNEILEFLKITPGQTGLDATLGYGGHTLEMLKRLNSKGHLYAIDVDSIELPRT 109 Query: 75 QETMRDY---KEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 QE + E ++ Q FS + + G ++ V+ DLGVSSMQID +RGFSF+ Sbjct: 110 QERLEGLGYGSEILTIKQMNFSNIDQIALESGPLNFVLADLGVSSMQIDNPERGFSFKSE 169 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTT 188 GPLD+R++ + GISA+ + + +L +L +E ++ I+ AI+ ++ TT Sbjct: 170 GPLDLRLNPNRGISAAARLKTISQDELQGMLLENADEPNSAAISRAIISEIKKGIDISTT 229 Query: 189 QDLSSLIQKTVYF----SKNNRIHPAT-RSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 L +I+ + F ++ + I + R FQALRI VN+E E L + L L GG Sbjct: 230 TQLQQIIKDALKFIPQNTRKDEIKKSCQRCFQALRIDVNDEFEMLYEFLEKLPATLAEGG 289 Query: 244 LLIVVSFHSLEDRLVKKFFAS--RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 + ++SFHS EDRLVKK F R G V++ I + P+ E+ Sbjct: 290 RVAILSFHSGEDRLVKKSFQRFFREG----------------VYREIAPNFIRPSTEECN 333 Query: 302 FNRRSRSAKLRAGMR 316 N R+RSAKLR ++ Sbjct: 334 TNGRARSAKLRWAIK 348 >gi|255026327|ref|ZP_05298313.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL J2-003] Length = 227 Score = 135 bits (341), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 74/214 (34%), Positives = 123/214 (57%), Gaps = 8/214 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VLL + + +L P + +DAT G G+S ++ A D+D A+ + Sbjct: 4 HETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDNAKI 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + DY ++ + +A F +++ + ++G VDG+++DLGVSS Q+D +RGFS+ + L Sbjct: 64 KLADYSDKVTFIKANFRDMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQDAAL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM ++A VVN+ + +DL RI GEEK + +IA I +RR+ P +TT +L Sbjct: 124 DMRMDQEQELTAKTVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTGELV 183 Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEI 225 +I+ + ++ HP R+FQA+RI VN+E+ Sbjct: 184 DIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDEL 217 >gi|13508054|ref|NP_110003.1| SAM-dependent methytransferase [Mycoplasma pneumoniae M129] gi|2496335|sp|P75466|RSMH_MYCPN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|1674216|gb|AAB96169.1| SAM-dependent methytransferase [Mycoplasma pneumoniae M129] Length = 308 Score = 135 bits (340), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 97/300 (32%), Positives = 156/300 (52%), Gaps = 12/300 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H VLL++VI LN LD T G GG+S+ + + + D D +++ E Sbjct: 7 HKSVLLDEVIHNLNIKGDGNYLDLTVGFGGHSQHILEQLTTGTLTGNDMDKDSITFCTEL 66 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 +D K+ L F+ +++ V DG++ DLGVSS Q+D +RGFSF+ +GP D Sbjct: 67 FKD-KKNVVLVHDNFANFFNHLKQLKVTKFDGILIDLGVSSYQLDKPERGFSFKHAGPFD 125 Query: 135 MRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 MRM S +A D++ + + ++LT +L GE IA A+ + TT +++ Sbjct: 126 MRMHQSDRVPTALDILERLSEEELTHVLKKFGEIAHPKPIAKALKTLINNTKNPTTVEVA 185 Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++ F K + + FQA+RI++N E+E L L+ K L G +V+ FH Sbjct: 186 ETVKAAASNFEKYKSRNYLAKVFQAIRIYLNRELESLEIVLQHIPKLLNNKGRFLVIVFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLE++LV+ + + V +P P F+ ITKK ++PT++++ N R RSAKL Sbjct: 246 SLEEKLVRNYIFKLTHFVQPPE--LPVKLTPP-FELITKKPILPTEQEIKTNPRVRSAKL 302 >gi|295109383|emb|CBL23336.1| S-adenosyl-methyltransferase MraW [Ruminococcus obeum A2-162] Length = 350 Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 99/316 (31%), Positives = 159/316 (50%), Gaps = 34/316 (10%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF--CKMGS-NVIALDRDPFAVSCG 74 G H+ +++++++ L PG+ DAT G GG++++ C G ++ A D DP + Sbjct: 51 GMHISIMVKEILDFLKIQPGETGFDATLGYGGHTKAMMECLHGEGHMYATDVDPEESA-- 108 Query: 75 QETMRDYKEQ------FSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSF 127 +T + EQ ++ F + + + G D ++ DLGVSSMQID RGFSF Sbjct: 109 -KTRKRLAEQGFGEDILTVKLQNFCTIDEIAKEAGGFDFILADLGVSSMQIDNPKRGFSF 167 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPF 185 + GPLD+R++ GISA++ ++ +L +L +E IA AI R+ Sbjct: 168 RADGPLDLRLNQEKGISAAERLDTIGRDELAGMLYENSDEPYCEEIAKAITDEIRRGNRV 227 Query: 186 QTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 TT L +I+KT+ F K+ R FQALRI VN E E L + + ALK Sbjct: 228 DTTTKLREIIEKTLSFIPEKERKDTVRKTCQRVFQALRIDVNREFEVLYEFMEKLPDALK 287 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300 GG + +++FHS ED+LVKK + + ++ K V+ P+ ++ Sbjct: 288 PGGRVAILTFHSGEDKLVKK--------------ALKAGYKAGIYSDYAKDVIRPSAQEC 333 Query: 301 AFNRRSRSAKLRAGMR 316 A N R+RS K+R ++ Sbjct: 334 AQNGRARSTKMRWAVK 349 >gi|160940252|ref|ZP_02087597.1| hypothetical protein CLOBOL_05141 [Clostridium bolteae ATCC BAA-613] gi|158436832|gb|EDP14599.1| hypothetical protein CLOBOL_05141 [Clostridium bolteae ATCC BAA-613] Length = 367 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 100/316 (31%), Positives = 159/316 (50%), Gaps = 32/316 (10%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGS--NVIALDRDPFAVSC 73 +G H+P+++ +++ L PG+ LDAT G GG+ SR ++ S ++ ALD D + Sbjct: 62 VGMHIPIMVNEILEFLQIQPGQTGLDATLGYGGHTSRMLERLESKGHIYALDVDSIEMEK 121 Query: 74 GQ---ETMRDYKEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQK 129 + E M E ++ + F+ + + G +D V+ DLGVSSMQID RGFSF+K Sbjct: 122 TRQRLEHMGYGPEILTIRKLNFANIDQIAGEFGPLDFVLADLGVSSMQIDNPSRGFSFKK 181 Query: 130 SGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQT 187 GPLD+R+ G AS+ + ++LT +L +E A IA ++ ++ T Sbjct: 182 EGPLDLRLDPLKGEPASERLKGLTQEELTGMLMENSDEPYAEEIARTVMGEIKRGREVAT 241 Query: 188 TQDLSSLIQKTVYFSKNNRIHPAT-----RSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 T L ++ + + F A R+FQALRI VN+E E L + L LK G Sbjct: 242 TTRLYEMVDRALAFIPEEERKEAVKKSCQRTFQALRIDVNSEFEVLYEFLDKLPGVLKPG 301 Query: 243 GLLIVVSFHSLEDRLVKKFFAS--RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300 G +++FHS EDR+VKK F R+G ++ + V+ P+ E+ Sbjct: 302 GRAAILTFHSGEDRIVKKSFKEMYRAG----------------LYSQVAGDVIRPSAEEC 345 Query: 301 AFNRRSRSAKLRAGMR 316 N R+ S K+R ++ Sbjct: 346 RMNSRAHSTKMRWAIK 361 >gi|153813493|ref|ZP_01966161.1| hypothetical protein RUMOBE_03913 [Ruminococcus obeum ATCC 29174] gi|149830437|gb|EDM85529.1| hypothetical protein RUMOBE_03913 [Ruminococcus obeum ATCC 29174] Length = 352 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 98/317 (30%), Positives = 161/317 (50%), Gaps = 34/317 (10%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF--CKMGS-NVIALDRDPFAVSCG 74 G H+ +++ +++ L PG+ DAT G GG++++ C G ++ A D DP + Sbjct: 51 GMHISIMVNEILDFLKIQPGETGFDATLGYGGHTKAMMECLHGEGHMYATDVDPEESA-- 108 Query: 75 QETMRDYKEQ------FSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSF 127 +T + EQ ++ F + + + G D ++ DLGVSSMQID RGFSF Sbjct: 109 -KTRKRLAEQGFGEDILTVKLQNFCTIDEIAKEAGGFDFILADLGVSSMQIDNPKRGFSF 167 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPF 185 + GPLD+R++ GISA++ +++ + +L +L +E IA AI R+ Sbjct: 168 RADGPLDLRLNQEKGISAAERLDKISRDELAGMLYENSDEPYCEEIAKAITDEIRKGNRV 227 Query: 186 QTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 TT L +I++T+ F K+ R FQALRI VN E E L + + ALK Sbjct: 228 DTTTKLREIIEETLDFLPEKEKKDTVRKTCQRVFQALRIDVNREFEVLYEFMEKLPDALK 287 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300 GG + +++FHS ED+LVKK + + ++ K V+ P+ ++ Sbjct: 288 PGGRVAILTFHSGEDKLVKK--------------ALKAGYKAGIYSDYAKDVIRPSAQEC 333 Query: 301 AFNRRSRSAKLRAGMRT 317 A N R+RS K+R +++ Sbjct: 334 AQNGRARSTKMRWAVKS 350 >gi|229495663|ref|ZP_04389392.1| S-adenosyl-methyltransferase MraW [Porphyromonas endodontalis ATCC 35406] gi|229317433|gb|EEN83337.1| S-adenosyl-methyltransferase MraW [Porphyromonas endodontalis ATCC 35406] Length = 307 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 104/306 (33%), Positives = 160/306 (52%), Gaps = 19/306 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQ 75 H+PVL + + L P V D T G G++ R + G ++ + DRD A++ Sbjct: 3 HLPVLCREAVEALLTRPNGVYADVTMGGAGHTCEILRHLGEKG-HLYSFDRDQDAMANAP 61 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 R F+ + F L ++ GV DGV+ DLGVSS D +RGFSF+ G Sbjct: 62 VDPR-----FTFVASDFRYLSRWMRYFGVEHLDGVLADLGVSSHHFDTAERGFSFRFEGA 116 Query: 133 L-DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 L DMRM+ +G +A+D++N +V+ L+ + GE K A RIA I K R S ++T + Sbjct: 117 LPDMRMNNRAGRTAADLLNTYSVEALSDLFYYYGELKDARRIAALIEKGRPSTGYRTIES 176 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L ++ + R ++ FQALRI VN+E+ L L S L GG L+V+++ Sbjct: 177 LLEVLAPVLPPQPPLRRKKLSQLFQALRIEVNDELGALRSLLTSLTSLLAPGGRLVVLTY 236 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNA----HPAVFQSITKKVVVPTQEDVAFNRRS 306 HSLEDRLVK++ G +V P A + + + +K ++P+ ++A N R+ Sbjct: 237 HSLEDRLVKEWGKGLLGTSQSVEDNDPMAAIYGQKRSEIEVVNRKPILPSDAEIAENPRA 296 Query: 307 RSAKLR 312 RSAK+R Sbjct: 297 RSAKMR 302 >gi|291519694|emb|CBK74915.1| S-adenosyl-methyltransferase MraW [Butyrivibrio fibrisolvens 16/4] Length = 347 Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 98/313 (31%), Positives = 151/313 (48%), Gaps = 28/313 (8%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVI-ALDRDPFAVSCG 74 G H+ +++++++ L PG+ LD T G GG++R + G I LD DP Sbjct: 48 GMHISIMVQEILDFLQIQPGQKGLDCTLGYGGHTRKMLEQLQGQGCIYGLDVDPIESKKT 107 Query: 75 QETMRDY---KEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 E +R + ++ F F+ + + G D V+ DLGVSSMQID +RGFS++ Sbjct: 108 VERLRGFGFGEDNFQFRLINFANIDKVAEEAGKFDFVLADLGVSSMQIDNPERGFSYKID 167 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK-RRQSAPFQTT 188 GPLD+R+ G SA++ ++ ++ ++ +E A IAH + + P TT Sbjct: 168 GPLDLRLDPEHGESAAERLHNITEEEFIGMMVENSDEPYAEEIAHKVFTLMAKGNPMDTT 227 Query: 189 QDLSSLIQKTVYFSKNNRIHPA-----TRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 L I + ++ A R FQALRI VN+E E L L LK GG Sbjct: 228 TALREAISEALWKVPKEEKEQAIKKSCARVFQALRIDVNSEFEVLYTFLEKLPGILKPGG 287 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 + +++FHS EDRLVKK F A V+ ++ VV P+ E+ N Sbjct: 288 RVAILTFHSGEDRLVKKSFKEL--------------AKEGVYSEVSSDVVRPSAEECRIN 333 Query: 304 RRSRSAKLRAGMR 316 RS+S K+R ++ Sbjct: 334 PRSKSTKMRWAVK 346 >gi|303278410|ref|XP_003058498.1| MraW methylase/RNA recognition motif protein [Micromonas pusilla CCMP1545] gi|226459658|gb|EEH56953.1| MraW methylase/RNA recognition motif protein [Micromonas pusilla CCMP1545] Length = 875 Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 102/322 (31%), Positives = 161/322 (50%), Gaps = 34/322 (10%) Query: 18 GDHVPVLLEKVI-ALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSC 73 G H P +L + I AL+ P V +D TFG GG+SR SN + A D DP A++ Sbjct: 487 GTHTPAMLRETIDALVAPNRDGVYVDGTFGRGGHSRGILAALSNRGRLHAFDMDPEAIAE 546 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGV--DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++ + +F++ A F + + KGV GV DLG+SS Q D RGF ++ G Sbjct: 547 AKK-LEAEDARFTIHHAPFGCMDTVLKPKGVVVAGVFLDLGISSPQFDDASRGFRPEQDG 605 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQAS---RIAHAIVKRRQSAPF-- 185 PLD+R + GI ASD + + DL R++ GE A+ R+A A+ R++ Sbjct: 606 PLDLRFDVTRGIPASDYLRRVERDDLARVIETYGETADATAARRVADAVCLARETGEGVP 665 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT+ +SL+ + + +HPA +FQALRI +N E +E+ +G+R+A + ++ GG L Sbjct: 666 STTKAFASLVAR-AKGQEYQAMHPAKLTFQALRIELNQEFDEMRRGMRAAVEVMEDGGRL 724 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP-----SNAHPAVFQSI-----------T 289 V+++ E ++ FF V R +P + HP+V + Sbjct: 725 GVLTWKHSECAILVDFFR----HVEETRPDLPLARFLEDRHPSVAAEVALANSDGWALTA 780 Query: 290 KKVVVPTQEDVAFNRRSRSAKL 311 P++++ N RSRSA L Sbjct: 781 DDAKRPSEKETRENSRSRSAIL 802 >gi|71031997|ref|XP_765640.1| S-adenosyl-methyltransferase mraW [Theileria parva strain Muguga] gi|68352597|gb|EAN33357.1| S-adenosyl-methyltransferase mraW, putative [Theileria parva] Length = 389 Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 94/309 (30%), Positives = 155/309 (50%), Gaps = 51/309 (16%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 +H+PV+L++ + L P + LD T G GG++ + +I++DRDP +V + Sbjct: 72 EHIPVMLKESMEYLITDPKGLYLDVTLGYGGHTEEILRRLNPKGKLISIDRDPESVYFNR 131 Query: 76 ETMRDYKEQ--FSLFQATFSQLQDYV-----PDKGVDG---------------------- 106 + ++ Y E+ S+ FS + D + P +G G Sbjct: 132 KRLKSYIEESRLSVEIGKFSGIIDLLKSHKLPTEGYTGFFLPILLFKLVISTLYLLYKEF 191 Query: 107 -VVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC----------------SGISASDVVN 149 +V DLG+S+ Q++ RGFS+ K+GPLDMRMS S +A +VN Sbjct: 192 RIVADLGLSTHQLENSKRGFSYMKNGPLDMRMSSPLNDPFNPNFKIDVKSSENTAYQLVN 251 Query: 150 QANVKDLTRILGILGEEKQASRIAHAIV-KRRQSAPFQTTQDLSSLIQKTVYFSKNNRIH 208 +++ L +I G+E +A+ IA I+ KRR +T+ L S++ ++ +++ Sbjct: 252 KSDESTLRKIFKEFGQEPRAASIAKKIIEKRRILGEIDSTEKLKSVVMDSLPMFHRSKMR 311 Query: 209 PATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFAS-RSG 267 +R FQALRI VN+E+ EL+ L + LK G + +S+H+LEDRLVK F + R+ Sbjct: 312 TLSRIFQALRIKVNDELNELSSFLNFIPQLLKYNGRFVCISYHALEDRLVKNSFINLRNF 371 Query: 268 KVMAVRHMI 276 K V+ I Sbjct: 372 KTPTVKFNI 380 >gi|291276974|ref|YP_003516746.1| putative S-adenosyl-L-methionine-dependent methyltransferase mraW [Helicobacter mustelae 12198] gi|290964168|emb|CBG40013.1| putative S-adenosyl-L-methionine-dependent methyltransferase mraW [Helicobacter mustelae 12198] Length = 303 Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 99/304 (32%), Positives = 169/304 (55%), Gaps = 20/304 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 H+PVLL +V+ + +I+D T G GG+S++ + ++ I +D+D A + + Sbjct: 6 HIPVLLHEVLDIFKDIKEGIIIDCTLGFGGHSKALLEQNQSIRIIGIDKDKDARAYATKL 65 Query: 78 MRDYKEQFSLFQATF-SQLQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + +KE+F + F Q++ + G + GV+ D+GVSS Q+D +GF F+ S LD Sbjct: 66 LSPFKERFCCVASGFGEQIEPLIAQYGREIKGVLADIGVSSYQLDTPKKGFGFE-SEVLD 124 Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM ISA ++N + L R+ GE +++ ++A + + R F + ++ Sbjct: 125 MRMDNDAHISAKTILNHYSAFALERVFREYGELRESKKLAQLLSQERTRTDFGDPKTFNA 184 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 ++ +F +N +I P +QALRI VN E+EEL + L A+K A L V++FHSL Sbjct: 185 FLK--AHF-RNPKILPLV--YQALRIEVNGELEELERLLLHAQKLKDAR--LCVITFHSL 237 Query: 254 EDRLVKKFFASRSGKVM----AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 EDR++K+ S + + A++ ++ V +TKK ++P+QE++ N RSRSA Sbjct: 238 EDRILKQALKSYTKSCICPLEALKCTCGNHHQKGVL--LTKKPIIPSQEEIKRNPRSRSA 295 Query: 310 KLRA 313 K+RA Sbjct: 296 KMRA 299 >gi|166033390|ref|ZP_02236219.1| hypothetical protein DORFOR_03116 [Dorea formicigenerans ATCC 27755] gi|166027747|gb|EDR46504.1| hypothetical protein DORFOR_03116 [Dorea formicigenerans ATCC 27755] Length = 358 Score = 132 bits (332), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 94/312 (30%), Positives = 159/312 (50%), Gaps = 28/312 (8%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCG 74 G H+ + +++++ L+ PG+ LDAT G GG++R + ++ LD DP Sbjct: 60 GMHISICVQEILDFLDIKPGQHGLDATLGYGGHTRKMLEKLEGHGHIYGLDVDPIESEKT 119 Query: 75 QETMRD--YKEQ-FSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 ++ +RD Y E ++ F+ + + G D V+ DLGVSSMQID +RGF+++ Sbjct: 120 KKRLRDLGYGEDILTVKLCNFADIDKVAEEHGKFDFVLADLGVSSMQIDNPERGFTYKFD 179 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK-RRQSAPFQTT 188 GPLD+RM+ G SA+ + + +++ +L +E A+ I ++ R+ +TT Sbjct: 180 GPLDLRMNPQKGESAAQRLKSMDAEEIEGMLVENSDEPYAAEITEVLMNWRKHGKSPETT 239 Query: 189 QDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 +L I++ + F K R+FQALRI VN E E L L + + GG Sbjct: 240 TELKEAIEEALTFLPEKEKKEAVKKSCQRTFQALRIDVNQEFEVLYAFLDKLPQVMNPGG 299 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 + +++FHS EDRLVK+ F + GK ++ I K V+ P+ ++ A N Sbjct: 300 RIAILTFHSGEDRLVKRAF--KEGK------------KAGIYSEICKDVIRPSAQECARN 345 Query: 304 RRSRSAKLRAGM 315 R++ K+R + Sbjct: 346 PRAKCTKMRWAI 357 >gi|261414983|ref|YP_003248666.1| S-adenosyl-methyltransferase MraW [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371439|gb|ACX74184.1| S-adenosyl-methyltransferase MraW [Fibrobacter succinogenes subsp. succinogenes S85] gi|302325451|gb|ADL24652.1| S-adenosyl-methyltransferase MraW [Fibrobacter succinogenes subsp. succinogenes S85] Length = 337 Score = 132 bits (332), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 92/304 (30%), Positives = 153/304 (50%), Gaps = 12/304 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H PV+L++ + LN P D T G GG+S + + + A DRD AV + Sbjct: 30 HDPVMLKECLEGLNIKPNGTYSDCTLGGGGHSYAIAQELNSEGTLHAFDRDDEAVQFATK 89 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + +F + FS+L + + +DGV++DLG+SS Q+D RGF+F PLD+R Sbjct: 90 RLAGVAPKFIVHPVPFSELGNEIEPNSLDGVLYDLGISSHQVDDSSRGFTFVGDNPLDLR 149 Query: 137 MS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M +SA + + + D L + +A ++A I ++ + L S I Sbjct: 150 MDRRENVSAQEWLRSVSEDDFAAALRKNADMDRAFKLATRIKEKVGEITTEGRDVLPSDI 209 Query: 196 QKTVYFSKNNRIHPAT----RSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + V ++ A R FQA+R+ VN E++++ LR+A LK GG L+V+S+H Sbjct: 210 KAVVEAVFPDKRREANSLLARVFQAIRMEVNGELKQIEDSLRAAVDCLKVGGRLVVMSYH 269 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP---SNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 S+EDR VK+ A+ K +P + + + +K ++P+ +++ N R+RS Sbjct: 270 SVEDRCVKE-TAAEFEKACICPENLPVCMCGGNHQRLKKVNRKPILPSADEINRNSRARS 328 Query: 309 AKLR 312 AKLR Sbjct: 329 AKLR 332 >gi|225009958|ref|ZP_03700430.1| S-adenosyl-methyltransferase MraW [Flavobacteria bacterium MS024-3C] gi|225005437|gb|EEG43387.1| S-adenosyl-methyltransferase MraW [Flavobacteria bacterium MS024-3C] Length = 308 Score = 132 bits (331), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 109/303 (35%), Positives = 160/303 (52%), Gaps = 23/303 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MG--SNVIALDRDPFAVSCGQE 76 H PV+L++ +A L P V +D TFG GG+S+ + +G + A D+D A++ Sbjct: 7 HNPVMLQETVAGLAIDPKGVYVDVTFGGGGHSKEILRQLGPQGRLFAFDQDKDALA---N 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 T+ D + F+L F ++ ++ G V G++ D GVSS Q D G RGFS + G L Sbjct: 64 TLADAR--FTLIPENFRFIKQFLRFHGIKQVHGILADFGVSSHQFDEGSRGFSTRFEGDL 121 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ SG I+A +VV DL + G+ + + IA AI+ R+ P +TT L Sbjct: 122 DMRMNQSGAITAKEVVGSYAHDDLANMFFQYGDLRNSKAIAAAIIAFREIQPIETTAQLK 181 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 + + + +I +QA+RI VN EI+ + + L L GG L V+S+HS Sbjct: 182 EALAPFLKGFNDAKILAPI--YQAIRIEVNQEIQVIKEFLAQVPDLLFPGGRLSVLSYHS 239 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV---VVPTQEDVAFNRRSRSA 309 LEDRLVK+F R+G+ P F+ KKV +PT+E+ N RSRSA Sbjct: 240 LEDRLVKRFI--RAGQFEGE----PEKDIFGHFEVPLKKVGGLQIPTKEEQRINTRSRSA 293 Query: 310 KLR 312 KLR Sbjct: 294 KLR 296 >gi|317498357|ref|ZP_07956653.1| MraW methylase [Lachnospiraceae bacterium 5_1_63FAA] gi|316894362|gb|EFV16548.1| MraW methylase [Lachnospiraceae bacterium 5_1_63FAA] Length = 398 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 95/313 (30%), Positives = 163/313 (52%), Gaps = 28/313 (8%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCG 74 G H+ + +++++ + PG+ LDAT G GG++R + ++ ALD DP Sbjct: 98 GMHISICVKEILEFFDIQPGQKGLDATLGYGGHTRKMLEKLQGKGHIYALDVDPIESVKT 157 Query: 75 QETMRDY---KEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 ++ + D ++ ++ F+ + + G D ++ DLGVSSMQID +RGFS++ Sbjct: 158 EKRLHDAGFGEDILTIKHINFANIDQVAEEVGPFDFILADLGVSSMQIDNPERGFSYKFE 217 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIA-HAIVKRRQSAPFQTT 188 GPLD+R++ GISA++ + + +L +E A +IA + ++ +TT Sbjct: 218 GPLDLRLNPEKGISAAERLEDITKAEFEGMLIENADEPYAKQIAKETVATMKRGKKIKTT 277 Query: 189 QDLSSLIQKTVYFSKNNRIHPAT-----RSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 DL +I++ + F A R+FQALRI VN+E E L + L AL GG Sbjct: 278 TDLKDVIERALNFLPEKERKEAVKKSCQRTFQALRIDVNSEFEVLEELLEKLPDALAPGG 337 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 + +++FHS EDRLVK F + GK + ++ + K V+ P++E+ A N Sbjct: 338 KVAILTFHSGEDRLVKHAF--KYGKKV------------GIYSDVAKDVIRPSKEECAQN 383 Query: 304 RRSRSAKLRAGMR 316 R++S K+R ++ Sbjct: 384 GRAKSTKMRWAIK 396 >gi|296124253|ref|YP_003632031.1| S-adenosyl-methyltransferase MraW [Planctomyces limnophilus DSM 3776] gi|296016593|gb|ADG69832.1| S-adenosyl-methyltransferase MraW [Planctomyces limnophilus DSM 3776] Length = 378 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 91/314 (28%), Positives = 161/314 (51%), Gaps = 28/314 (8%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCG 74 G H P+++++++ +L P G+ +D T G GG+++ + ++ +D DP + Sbjct: 77 GTHRPIMVDEILQVLAPQAGERGIDCTLGFGGHAQQLLRAIQPDGCLLGIDADPIELPKT 136 Query: 75 QETMRDY---KEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + +R E + + F+ L +P G D ++ DLG+SSMQID RGF+F+ Sbjct: 137 EARLRSAGFPAETLMVQRTNFAALPGLIPAFLPGGADFLMADLGLSSMQIDDPARGFTFK 196 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 PLDMRM+ S G SA++ + + + + L ++L +E A +A ++ +Q + F T Sbjct: 197 VDAPLDMRMNPSRGPSAAEFLAKIDERGLAKLLEDAADEPCAEPLARGLITAQQISAFIT 256 Query: 188 TQDLSSLIQKTVY----FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 T L+ +++ + + + R FQA+RI VN+E L L+S + +K GG Sbjct: 257 TGQLAEAVRRVLATIGSLDEEDVSSTIRRVFQAIRIAVNDEFSTLDILLKSIPQCVKPGG 316 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 + +++FHS EDR VKK F + V++ I+ +V+ T ++ N Sbjct: 317 RIAILTFHSGEDRRVKKAFQAGLAS--------------GVYREISSEVMRATPQERHDN 362 Query: 304 RRSRSAKLRAGMRT 317 RS AKLR +R+ Sbjct: 363 PRSIPAKLRWAIRS 376 >gi|167756448|ref|ZP_02428575.1| hypothetical protein CLORAM_01981 [Clostridium ramosum DSM 1402] gi|167703856|gb|EDS18435.1| hypothetical protein CLORAM_01981 [Clostridium ramosum DSM 1402] Length = 362 Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 94/314 (29%), Positives = 159/314 (50%), Gaps = 28/314 (8%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSC 73 +G H+ +++++++ L+ G++ LD T G GG++ + ++ ALD DP Sbjct: 62 VGMHLSIMVDEILEFLDIQEGQIGLDCTLGYGGHTLKMLECLNYTGHMYALDIDPIESIK 121 Query: 74 GQETM--RDYKEQ-FSLFQATFSQLQDYVPDKGV-DGVVFDLGVSSMQIDCGDRGFSFQK 129 +E + + Y E ++ F + + G+ D V+ DLGVSSMQID +RGFS++K Sbjct: 122 TKERLLGKGYGEDVLTIKNCNFKDIDIISKEVGLFDFVLADLGVSSMQIDNPERGFSYKK 181 Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF-QT 187 GPLD+R++ G+ AS + + N L ++ +E A IA I +S T Sbjct: 182 EGPLDLRLNPQKGVPASIKLQELNRDQLEQLFIENSDEPYAKEIARNIDSYLKSGQLITT 241 Query: 188 TQDLSSLIQKT-----VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 T L +I+K+ V K+ A R FQALRI VN E + L + + LK G Sbjct: 242 TTQLYKIIEKSLSSIPVTERKDIVKKSAARVFQALRIEVNREFDVLIEFMDKLPTILKPG 301 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G + +++FHS EDR+VKK F + ++ + + V+ P++E+ Sbjct: 302 GRVAILTFHSGEDRIVKKAFKEMK--------------NLGIYSDVARNVIRPSKEECHM 347 Query: 303 NRRSRSAKLRAGMR 316 N R++S K+R ++ Sbjct: 348 NSRAKSTKMRWAIK 361 >gi|291561054|emb|CBL39854.1| S-adenosyl-methyltransferase MraW [butyrate-producing bacterium SSC/2] Length = 352 Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 94/313 (30%), Positives = 158/313 (50%), Gaps = 28/313 (8%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCG 74 G H+ + +++++ + PG+ LDAT G GG++R + ++ ALD DP Sbjct: 52 GMHISICVKEILEFFDIQPGQKGLDATLGYGGHTRKMLEKLQGKGHIYALDVDPIESVKT 111 Query: 75 QETMRDY---KEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 ++ + D ++ ++ F+ + + G D ++ DLGVSSMQID +RGFS++ Sbjct: 112 EKRLHDAGFGEDILTIKHINFANIDQVAEEVGPFDFILADLGVSSMQIDNPERGFSYKFE 171 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIA-HAIVKRRQSAPFQTT 188 GPLD+R++ GISA++ + + +L +E A +IA + ++ +TT Sbjct: 172 GPLDLRLNPEKGISAAERLEDITKAEFEGMLIENADEPYAKQIAKETVATMKRGKKIKTT 231 Query: 189 QDLSSLIQKTVYFSKNNRIHPAT-----RSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 DL +I++ + F A R+FQALRI VN+E E L + L AL GG Sbjct: 232 TDLKDVIERALNFLPEKERKEAVKKSCQRTFQALRIDVNSEFEVLEELLEKLPDALAPGG 291 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 + ++ FHS EDRLVK H ++ I K V+ P++E+ A N Sbjct: 292 KVAILIFHSGEDRLVK--------------HAFKYGKKAGIYSDIAKDVIRPSKEECAQN 337 Query: 304 RRSRSAKLRAGMR 316 R++S K+R ++ Sbjct: 338 GRAKSTKMRWAIK 350 >gi|12045077|ref|NP_072888.1| S-adenosyl-methyltransferase MraW [Mycoplasma genitalium G37] gi|255660224|ref|ZP_05405633.1| S-adenosyl-methyltransferase MraW [Mycoplasma genitalium G37] gi|1351515|sp|P47464|RSMH_MYCGE RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|3844825|gb|AAC71443.1| S-adenosyl-methyltransferase MraW [Mycoplasma genitalium G37] gi|166078718|gb|ABY79336.1| S-adenosyl-methyltransferase MraW [synthetic Mycoplasma genitalium JCVI-1.0] Length = 309 Score = 129 bits (325), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 97/303 (32%), Positives = 155/303 (51%), Gaps = 18/303 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSNVIAL-DRDPFAVS-CGQE 76 H VL+ +VI LN P LD T G G+S+ K+ + + + D D +++ C + Sbjct: 8 HQSVLINEVIHNLNINPCGNYLDLTAGFAGHSQKILEKLTTGTLTINDVDKESINFCQKL 67 Query: 77 TMRDYK-----EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++ + F+ F QL DG++ DLGVSS Q++ +RGFSF+ G Sbjct: 68 FFKNNNVVIIHDNFANFPVHLKQLSI----TKFDGILMDLGVSSHQLNQPNRGFSFKNDG 123 Query: 132 PLDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 P+DMRM S +A V+ + L+ IL G+ K IA + K Q+ TT Sbjct: 124 PIDMRMDQSNQKNTALTVLKNLTEQKLSLILKKYGDIKHPKPIAIGLKKAVQTEKNLTTT 183 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ ++++ F K + + FQA+RI++N+EI L L LK +V+ Sbjct: 184 QLAKVVKECATGFEKYQSRNYLAKVFQAIRIYLNDEITNLKTALTFIPNLLKNNSRFLVI 243 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHS+E+++V+ F A + + +P PA +Q ITKK ++P+Q+++ N RSRS Sbjct: 244 VFHSIEEKIVRNFIAKLTSFIQP--EALPIKLTPA-YQLITKKPILPSQKELELNPRSRS 300 Query: 309 AKL 311 AKL Sbjct: 301 AKL 303 >gi|255076257|ref|XP_002501803.1| MraW methylase/RNA recognition motif protein [Micromonas sp. RCC299] gi|226517067|gb|ACO63061.1| MraW methylase/RNA recognition motif protein [Micromonas sp. RCC299] Length = 744 Score = 129 bits (324), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 103/336 (30%), Positives = 158/336 (47%), Gaps = 27/336 (8%) Query: 12 AIHHTIGDHVPVLL-EKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRD 67 A G H P +L E + AL+ P P +D TFG GG++R +G N + A D D Sbjct: 354 ATEQAFGTHTPAMLRETIAALVKPDPNGTYVDGTFGRGGHTRGILAALGPNGRLHAFDMD 413 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV--DGVVFDLGVSSMQIDCGDRGF 125 P A+ ++ + +F++ A F + + GV GV DLG+SS Q D RGF Sbjct: 414 PEAIKEAKK-LEAEDSRFTIHHAPFGCMDTVLKPLGVTCSGVFLDLGISSPQFDDESRGF 472 Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQ---ASRIAHAIVKRRQ 181 ++ GPLD+R + G+ AS+ + + + +L RIL GE A RIA A+ Sbjct: 473 RPEQDGPLDLRFDVTQGVPASEFLERVDRDELVRILHEYGETADPVAARRIADAVCLAVA 532 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 +T + + + +HPA +FQALRI +N E +E+ +G+R+A + + Sbjct: 533 EERLPSTTKAFAALVAAAKGKEYQAMHPAKLTFQALRIHLNQEFDEMRRGMRAAAEVMID 592 Query: 242 GGLLIVVSFHSLEDRLVKKFF--------ASRSGKVMAVRHMIPSNAHPAVFQSITKKVV 293 GG L V+++ E ++ F K M H NA P V+ Sbjct: 593 GGRLGVLTWKHSECAILVDFHRHFEVVQPTQPLLKWMRSNHPEKENALPTVWGLTMDDAQ 652 Query: 294 VPTQEDVAFNRRSRSA------KLRAGMR--TVERS 321 P++ ++ N RSRSA K+ AG R VER+ Sbjct: 653 RPSEREMRDNSRSRSAILHVLRKVDAGRRLADVERA 688 >gi|167768055|ref|ZP_02440108.1| hypothetical protein CLOSS21_02599 [Clostridium sp. SS2/1] gi|167710384|gb|EDS20963.1| hypothetical protein CLOSS21_02599 [Clostridium sp. SS2/1] Length = 352 Score = 129 bits (324), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 94/313 (30%), Positives = 162/313 (51%), Gaps = 28/313 (8%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCG 74 G H+ + +++++ + PG+ LDAT G GG++R + ++ ALD DP Sbjct: 52 GMHISICVKEILEFFDIQPGQKGLDATLGYGGHTRKMLEKLQGKGHIYALDVDPIESVKT 111 Query: 75 QETMRDY---KEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 ++ + D ++ ++ F+ + + G D ++ DLGVSSMQID +RGFS++ Sbjct: 112 EKRLHDAGFGEDILTIKHINFANIDQVAEEVGPFDFILADLGVSSMQIDNPERGFSYKFE 171 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIA-HAIVKRRQSAPFQTT 188 GPLD+R++ GISA++ + + +L +E A +IA + ++ +TT Sbjct: 172 GPLDLRLNPEKGISAAERLEDITKAEFEGMLIENADEPYAKQIAKETVATMKRGKKIKTT 231 Query: 189 QDLSSLIQKTVYFSKNNRIHPAT-----RSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 DL +I++ + F A R+FQALRI VN+E E L + L AL GG Sbjct: 232 TDLKDVIERALNFLPEKERKEAVKKSCQRTFQALRIDVNSEFEVLEELLEKLPDALAPGG 291 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 + +++FHS EDRLVK F + GK + ++ + K V+ P++E+ N Sbjct: 292 KVAILTFHSGEDRLVKHAF--KYGKKV------------GIYSDVAKDVIRPSKEECTQN 337 Query: 304 RRSRSAKLRAGMR 316 R++S K+R ++ Sbjct: 338 GRAKSTKMRWAIK 350 >gi|302669504|ref|YP_003829464.1| S-adenosyl-methyltransferase MraW family protein [Butyrivibrio proteoclasticus B316] gi|302393977|gb|ADL32882.1| S-adenosyl-methyltransferase MraW family [Butyrivibrio proteoclasticus B316] Length = 347 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 95/313 (30%), Positives = 152/313 (48%), Gaps = 28/313 (8%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCG 74 G H+ +++++++ +L PG+ LD T G GG++R + + + LD DP + Sbjct: 48 GMHISIMVKEILEVLKIQPGEQGLDCTLGYGGHTRKMLEQLTGKGCIYGLDVDPIESAKT 107 Query: 75 QETMRDY---KEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 E +R+ + F F+ + + G D V+ DLGVSSMQID RGFS++ Sbjct: 108 VERLRNAGFDENAFKFRLINFANIDKVAEEAGKFDFVLADLGVSSMQIDDPKRGFSYKID 167 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK-RRQSAPFQTT 188 GPLD+R+ G SA++ ++ + +L +E A IA + ++ P TT Sbjct: 168 GPLDLRLDPEHGESAAERLHNITRDEFVGMLVENSDEPYAEEIADKVFNLMKKGDPMDTT 227 Query: 189 QDLSSLIQKTVY----FSKNNRIHPA-TRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 L S I+ ++ K+ I + R FQALRI VN+E E L L L G Sbjct: 228 TALRSAIENALWKLPKEEKDQAIKKSCARVFQALRIDVNSEFEVLYSFLEKLPGILNPGA 287 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 + +++FHS EDRLVKK F +F I++ V+ P+ E+ N Sbjct: 288 RVAILTFHSGEDRLVKKAFK--------------ECKKAGLFSEISEDVIRPSAEECRVN 333 Query: 304 RRSRSAKLRAGMR 316 RS+S K+R ++ Sbjct: 334 PRSKSTKMRWAIK 346 >gi|26553777|ref|NP_757711.1| methyltransferase [Mycoplasma penetrans HF-2] gi|30173058|sp|Q8EW81|RSMH_MYCPE RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|26453784|dbj|BAC44115.1| methyltransferase [Mycoplasma penetrans HF-2] Length = 312 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 83/248 (33%), Positives = 127/248 (51%), Gaps = 9/248 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+ V LE + LN K+ +D TFG GG+S K S+ + D D A Sbjct: 9 HISVRLEDAVDSLNIQKDKIYVDCTFGRGGHSFEILKRLSSKGKLFVFDLDLDAKKYFDN 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +K F Q F L++ + VDG +FD GVSS +D +RGFSF+ L Sbjct: 69 NFSKFKNCF-FIQDNFKNLKENLAKFDISKVDGFLFDFGVSSPMLDNANRGFSFKLDARL 127 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ + +SA +V+N + + L +I GE + + I+K R + P +TT +L Sbjct: 128 DMRMNQNQELSAYEVINNYSKEKLIQIFWKYGEIRNPVPVVDEIIKYRSNKPIETTLELV 187 Query: 193 SLIQK-TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+K T + + H A FQA+RI VN+E+ + + L A L G ++ +SFH Sbjct: 188 DIIRKRTPIKIQREKKHFARTYFQAIRIEVNDELNSIRKALSDALNMLSKNGRIVTISFH 247 Query: 252 SLEDRLVK 259 SLE++ +K Sbjct: 248 SLEEKEIK 255 >gi|298711101|emb|CBJ32330.1| S-adenosyl-methyltransferase MraW [Ectocarpus siliculosus] Length = 332 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 98/329 (29%), Positives = 145/329 (44%), Gaps = 88/329 (26%) Query: 27 KVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKE 83 +V+ L P V +D T G GG+S + G+ VI LDRDP A+ + E Sbjct: 5 EVLEWLITKPDGVYVDCTLGGGGHSAALLSALGAGARVIGLDRDPDALREASARLAAEAE 64 Query: 84 --QFSLFQATFSQLQDYV-------------PDKG-------------------VDGVVF 109 +F ++ F+ + V P+ VDG++ Sbjct: 65 VGRFQAVRSNFAAVGRAVRECELMLQQPPLAPEASTAPAPAAGVPPRTTSAGPLVDGILV 124 Query: 110 DLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSG---------------------------- 141 DLGVSS QID RGFSF GPLDMRM +G Sbjct: 125 DLGVSSHQIDDEARGFSFSADGPLDMRMEGTGDGDSVGERSGFGGVASTSREHEDRAVEK 184 Query: 142 ------------------ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 +SA+DVVN A+ ++ ++ G+EK++++IA AIV+ R Sbjct: 185 GGRGEGGGGGDGRGGGGGVSAADVVNFADESEIREMVWRYGDEKRSTKIARAIVENR--- 241 Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 P TT L+ ++ + R+ R FQALRI VN E++ L L A+ ++ GG Sbjct: 242 PIATTGQLAEVVGRCA--PPKERVKTLARVFQALRIEVNGELDALEALLEQAKHLVRPGG 299 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAV 272 L+++S+HSLEDR VK+ A+ + K A Sbjct: 300 RLLILSYHSLEDRRVKRVLATGNLKFFAT 328 >gi|205355535|ref|ZP_03222306.1| hypothetical protein Cj8421_0691 [Campylobacter jejuni subsp. jejuni CG8421] gi|205346769|gb|EDZ33401.1| hypothetical protein Cj8421_0691 [Campylobacter jejuni subsp. jejuni CG8421] Length = 236 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 86/231 (37%), Positives = 129/231 (55%), Gaps = 11/231 (4%) Query: 89 QATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS-CSGISASD 146 Q+ FS++ + + K + G++ D+GVSS Q+D +RGFS S LDMRM+ S ISA + Sbjct: 2 QSNFSEVLEKISHKEELRGILADIGVSSFQLDNNERGFSVN-SDFLDMRMNQNSKISAYE 60 Query: 147 VVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNR 206 ++N + LT I GE A IA I R P ++ ++L +I K +N+R Sbjct: 61 IINTYTKEQLTSIFKDYGELHDAHFIAEKICLERSKNPIKSAKELYQIIGKG---KQNHR 117 Query: 207 -IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASR 265 I AT +FQA+RI VN E++ L L E +L ++SFHSLEDR+VK+FF Sbjct: 118 KISKATLAFQAIRIEVNQELKVLKDFLEHLENLKPKNCILAIISFHSLEDRIVKQFFKKW 177 Query: 266 SGKVMAVRHMIPS---NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 S + ++ N H ++ Q ITKK + ++E++ N RS AK+RA Sbjct: 178 SKNCICNEKIMRCECGNNH-SLGQIITKKAISASKEELLKNSRSSCAKMRA 227 >gi|145349365|ref|XP_001419106.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144579337|gb|ABO97399.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 254 Score = 123 bits (308), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 85/254 (33%), Positives = 133/254 (52%), Gaps = 13/254 (5%) Query: 20 HVPVLL-EKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H P +L E + AL+ P V +D TFG GG++R S + A D DP A+ G+ Sbjct: 1 HTPAMLAETIAALVAPDRSGVYVDGTFGRGGHTRGILAALSAEGRLHAFDMDPEAIKVGK 60 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGV--DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 E R+ +F + A F + D + GV GV DLG+SS Q D RGF ++ GPL Sbjct: 61 ELERE-DSRFKIHHAPFGCMADVLRPLGVKPSGVFLDLGISSPQFDDSSRGFRPEQDGPL 119 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQ---ASRIAHAIVKRRQSAPF-QTT 188 D+R G+ AS+ + + ++L R++ GE A RI AIV R++ TT Sbjct: 120 DLRFDVERGVPASEYLRLVSREELRRVIHEYGETTDPIAARRITDAIVLARENGSLPSTT 179 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 ++ ++L+ K + +HPA +FQALRI +N E +E+ +G+ +A + G L ++ Sbjct: 180 KEFAALVAKA-KGKEYQMMHPAKLTFQALRIALNQEFDEMRRGMHAAFDIMPEHGRLGIL 238 Query: 249 SFHSLEDRLVKKFF 262 ++ E +V FF Sbjct: 239 TWKHSECAIVVDFF 252 >gi|241998832|ref|XP_002434059.1| SAM dependent methyltransferase, putative [Ixodes scapularis] gi|215495818|gb|EEC05459.1| SAM dependent methyltransferase, putative [Ixodes scapularis] Length = 368 Score = 122 bits (305), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 104/350 (29%), Positives = 158/350 (45%), Gaps = 43/350 (12%) Query: 7 KTMSSAIHHTIGD---HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV-- 61 K MSSA+ + H PV+L +VI LN G+ ++D TFGAGG+S++ +V Sbjct: 20 KQMSSAVSQLETERFTHTPVMLTEVIDALNVQDGQTLIDFTFGAGGHSKALLSAAKDVKV 79 Query: 62 IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSM 116 +DRDP A +Y + + FS++++ + GV DG + D G SSM Sbjct: 80 FGVDRDPTAYRAACSIATEYPGRLFPVLSRFSEVEETLEQLGVQPNSVDGAILDCGCSSM 139 Query: 117 QIDCGDRG-------FSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQA 169 Q D RG F LD S ++ +++V +I A Sbjct: 140 QFDDPSRGSIHGIMKFPLNLCVKLDCLRHPSSYVIGTLLYKSSVDIKKQIQKYFSNASTA 199 Query: 170 SRIAHAIVK---------RRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIF 220 + + + R QS + SL ++ + H AT++F ALRIF Sbjct: 200 ETLCGNVFESLIVLSRNERHQSWVGAGQLYIGSLGERRDMLGRPT--HLATKTFMALRIF 257 Query: 221 VNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFAS------RSGKVMAVRH 274 VN+E+ EL L + L+ GG L V+SFHSLEDRLVK+ F SG + A ++ Sbjct: 258 VNDELNELNHALTVGRRLLRPGGRLAVLSFHSLEDRLVKRHFQGIDLDEPVSGSI-AQKY 316 Query: 275 MIPSNAHPAVFQSITKKVV--------VPTQEDVAFNRRSRSAKLRAGMR 316 + H + ++ V +P+ ++V N RSRSAKLR + Sbjct: 317 RNAATWHGREEMEVARRRVWEPIGTLGLPSAQEVERNPRSRSAKLRVAAK 366 >gi|330981226|gb|EGH79329.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 186 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 69/181 (38%), Positives = 109/181 (60%), Gaps = 9/181 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H+ VLLE+ + L LD TFG GG+SR ++G + ++ D+DP A++ GQ Sbjct: 7 HITVLLEEAVEALAVRADGCYLDGTFGRGGHSRLILSQLGPDGRLLGFDKDPQAIATGQ- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F + Q +F++L ++G V G++ DLGVSS Q+D +RGFSF GP Sbjct: 66 ALAAEDGRFVIVQRSFAELGSETQERGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDGP 125 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G+SA++ + A +++ R+ GEE+ A R+A+A+V RR+ PF+ T DL Sbjct: 126 LDMRMDPTRGVSAAEFIATAPAEEIARVFKEYGEERFAKRMANAVVARREVQPFERTADL 185 Query: 192 S 192 + Sbjct: 186 A 186 >gi|223993323|ref|XP_002286345.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220977660|gb|EED95986.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 495 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 117/391 (29%), Positives = 165/391 (42%), Gaps = 118/391 (30%) Query: 38 KVILDATFGAGGYSRSF------CKMGSNVIALDRDPFAVSCGQETMRDY---------- 81 ++ +D T G GG+S++ C + +I D DP A+S + DY Sbjct: 112 RLFIDGTLGGGGHSQAILQQLRPCDV---LIGCDVDPDALSTASNRLVDYLGTREYILGK 168 Query: 82 ----------------KEQFSLFQATFSQL--------------------QDYVPD---- 101 + F Q+ F L D + D Sbjct: 169 SSTVDAEEMACQWEEGRPMFIPVQSNFRNLINVLSKVRHPVSGRLLLGSRDDSIGDGQKD 228 Query: 102 -----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS------------CSGISA 144 G +G++ DLGVSS QID G+RGF+F K GPLDMRMS S ++A Sbjct: 229 AVEFPNGANGMLLDLGVSSHQIDTGERGFAFMKEGPLDMRMSGNTPQISTSATIGSSLTA 288 Query: 145 SDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK-TVYFSK 203 +D+ N+ + + IL G+E +A RIA AI+ R P TT DL I T F++ Sbjct: 289 ADICNEFDEPTIIDILSTYGDEPRAKRIASAIIASR---PLYTTTDLVHAINSVTPTFAR 345 Query: 204 NNR---IHPATRSFQALRIFVNNEIEELAQGL-RSAEKAL-KAGGL-------------L 245 R I + R FQALRI VN E L L R A L ++GGL L Sbjct: 346 QKRAGLIATSARVFQALRIVVNEEDGALKDVLERVAPWVLCRSGGLMNVGDDEKRDDGIL 405 Query: 246 IVVSFHSLEDRLVKKFF----------ASRSGKVMAVRHMIPS--NAHPAVFQSITKKVV 293 V+S+HS+ED++ K+ S+ G V+ R M + N V + + Sbjct: 406 AVLSYHSMEDKMAKRVMRDGSVDFLDGGSKGGSVLE-RDMFGNVINGDGIVDDAKSHLPF 464 Query: 294 VP-------TQEDVAFNRRSRSAKLRAGMRT 317 P T E++A N R+RSA LR G+R Sbjct: 465 EPVGKPRKATDEEIAVNSRARSATLRVGIRN 495 >gi|123225262|emb|CAM17437.1| methyltransferase 5 domain containing 1 [Mus musculus] gi|123231530|emb|CAM24680.1| methyltransferase 5 domain containing 1 [Mus musculus] Length = 230 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 67/159 (42%), Positives = 94/159 (59%), Gaps = 11/159 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCGQET 77 H+PV++++V+ L P G+V LD TFG+GG++R+ + +V+ ALDRDP A + ++ Sbjct: 72 HIPVMVDQVVHCLAPQKGQVFLDMTFGSGGHTRAILQKEPDVMVYALDRDPVAYAIAEQL 131 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 R Y Q FSQ + + GV DG++ DLG SSMQ+D +RGFS +K GP Sbjct: 132 SRLYPTQIQALLGQFSQAEALLMKAGVQPGTIDGILMDLGCSSMQLDAPERGFSLRKDGP 191 Query: 133 LDMRMSCSGI----SASDVVNQANVKDLTRILGILGEEK 167 LDMRM +ASDVVN + + L IL GEEK Sbjct: 192 LDMRMDGDRYPDTPTASDVVNALDQQALASILRAYGEEK 230 >gi|323455669|gb|EGB11537.1| mraW S-adenosyl-L-methionine-dependent methyltransferase-like protein [Aureococcus anophagefferens] Length = 404 Score = 119 bits (299), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 90/312 (28%), Positives = 153/312 (49%), Gaps = 27/312 (8%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRD--PFAVS 72 G HVP+++ + + L V +D T G GG+S + G+ ++ +DRD A + Sbjct: 106 GTHVPIMVAECLEHLRVGDAAVAVDCTLGYGGHSTALVAALPRGARLLGVDRDGEELAKT 165 Query: 73 CGQ--ETMRDYKEQFSLFQ--ATFSQLQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFS 126 + E R + +L Q + ++ + D + +G VD ++ DLG SSMQ+D +RGF+ Sbjct: 166 AARLAEAPRAASGEVTLEQMHSNYAAVGDELARRGLAVDALLADLGCSSMQVDDPERGFT 225 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 +++ GPLDMRM S G +A+D + +++ D+ + + A+ RR P Sbjct: 226 YKREGPLDMRMDTSRGETAADWLARSSTADVAAAFRTAADFGKRDARELAVAARRAPTPA 285 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT + ++ + R+ QALR+ VN+E L L S AL GG Sbjct: 286 TTTA-FAERVRGVALEEETADDDAVKRAMQALRVAVNDEFASLDALLASLPDALAPGGRA 344 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 +V++FHS EDR VK+ F + + +N V+ ++ ++ V + E+ N R Sbjct: 345 VVLTFHSGEDRRVKQAF----------KKGLAAN----VYSAVARRPVRASPEERRANSR 390 Query: 306 SRSAKLRAGMRT 317 S KLR +R+ Sbjct: 391 SGCCKLRWCVRS 402 >gi|325915801|ref|ZP_08178101.1| putative S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Xanthomonas vesicatoria ATCC 35937] gi|325537984|gb|EGD09680.1| putative S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Xanthomonas vesicatoria ATCC 35937] Length = 218 Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 78/187 (41%), Positives = 105/187 (56%), Gaps = 10/187 (5%) Query: 154 KDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRS 213 +D+ +L GEE+Q+ RIA AIV RR P T L+ LI +V +++ HPATRS Sbjct: 21 RDIADVLWTYGEERQSRRIARAIVARRAEQPLLRTAQLADLI-ASVMPRGDSKTHPATRS 79 Query: 214 FQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVR 273 FQA+RI++N E+++L GL +A ALK GG L V+SFHSLEDR+VK+F A R K Sbjct: 80 FQAIRIYINRELDDLQAGLDAALDALKPGGRLAVISFHSLEDRIVKQFMA-RYAKAPPSN 138 Query: 274 HMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRSAKLRA----GMRTVERSIEDDSF 327 +P A P V Q I+ + E + N R+RSA LR GM E + + Sbjct: 139 RRLP-EAQPFVPTLQLISGAIKADDAE-LNINPRARSAVLRVAEKLGMGNGESGMGKGNS 196 Query: 328 VHLPRLP 334 PR P Sbjct: 197 AAAPRFP 203 >gi|167752871|ref|ZP_02424998.1| hypothetical protein ALIPUT_01133 [Alistipes putredinis DSM 17216] gi|167659940|gb|EDS04070.1| hypothetical protein ALIPUT_01133 [Alistipes putredinis DSM 17216] Length = 183 Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 76/185 (41%), Positives = 104/185 (56%), Gaps = 5/185 (2%) Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM+ G +A+D+VN + LTRILG GE ++A IV+ R + P TT DL + Sbjct: 1 MRMNQRGGGTAADLVNTLDADALTRILGDWGEIDTPWKVAACIVRARTAQPILTTADLVA 60 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 + K + T+ FQALRI VN E+E L L + K L+ GG L+V+S+HSL Sbjct: 61 AVAPCT--PKKDESKFLTKLFQALRIEVNGEMEALKMALEQSLKVLRPGGRLVVISYHSL 118 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 EDRLVK F S + + + P F+ IT+K V P+ E++ N RSRSAKLRA Sbjct: 119 EDRLVKNFLRSGNFEGRIEKDFFGKPETP--FEIITRKAVTPSSEELVRNPRSRSAKLRA 176 Query: 314 GMRTV 318 + V Sbjct: 177 AAKIV 181 >gi|300175849|emb|CBK21845.2| unnamed protein product [Blastocystis hominis] Length = 221 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 70/193 (36%), Positives = 105/193 (54%), Gaps = 12/193 (6%) Query: 81 YKEQFSLFQATFSQLQDYVPDKG---------VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 Y+ + S+ TF+ Y+ +G + DLG +S+ +D DRGFSFQK G Sbjct: 12 YQSRVSIITDTFANTYKYLNQMNDSNASFATKANGTLLDLGFNSVHVDEADRGFSFQKDG 71 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILG-ILGEEKQASR-IAHAIVKRRQSAPFQTT 188 PLDMR S GI+A+D+VNQ + LT I GE + R +A I +RR+ F T Sbjct: 72 PLDMRYDPSQGITAADLVNQLDRDSLTAIFAEYSGETYRTCRHVASVICRRREKQQFTNT 131 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 D ++ + K + K +R P T FQALRI VNNE + L + + + + GG+ + + Sbjct: 132 IDFATCVNKALESGKRSRKTPCTGIFQALRISVNNEYDHLNKFMETLPAMMAPGGISVFL 191 Query: 249 SFHSLEDRLVKKF 261 F SLE ++VK++ Sbjct: 192 CFQSLEVQIVKRW 204 >gi|213025088|ref|ZP_03339535.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 165 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 68/162 (41%), Positives = 99/162 (61%), Gaps = 11/162 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + LN P + +D TFG GG+SR ++G ++A+DRDP A++ Q Sbjct: 7 HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAQ- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 T+ D + FS+ FS L DYV ++ +DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 66 TINDPR--FSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIA 173 LDMRM + G SA++ + A D+ +L GEE+ A RIA Sbjct: 124 LDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIA 165 >gi|13537286|dbj|BAB40632.1| hypothetical protein [Listonella pelagia] Length = 189 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 73/186 (39%), Positives = 103/186 (55%), Gaps = 14/186 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H+ VLL + I L P +D TFG GG+SR+ K+G N + ++DRDP A++ Q+ Sbjct: 7 HISVLLNESIDGLAIKPDGTYIDGTFGRGGHSRTILSKLGENGRLFSIDRDPQAIAEAQK 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +F++ FS + +Y VDGV+ DLGVSS Q+D +RGFSF K GP Sbjct: 67 I---DDPRFTIIHGPFSGMAEYAERYDLVGKVDGVLLDLGVSSPQLDDAERGFSFMKDGP 123 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR---QSAPFQTT 188 LDMRM SG+ S + A + D+T ++ GE+K A RIA IV R ++ P T Sbjct: 124 LDMRMDPTSGMPVSQWLMDAELDDITWVIREFGEDKHARRIAKGIVAYRENEENEPLTRT 183 Query: 189 QDLSSL 194 L+ L Sbjct: 184 GQLAKL 189 >gi|198431221|ref|XP_002121456.1| PREDICTED: similar to methyltransferase 5 domain containing 1 [Ciona intestinalis] Length = 343 Score = 116 bits (290), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 124/224 (55%), Gaps = 32/224 (14%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR------SFCKMGSNVIALDRDPFAVSC 73 H+PV+ E++++ LN G VI+D TFGAGG+++ CK VIALDRD A Sbjct: 36 HIPVMAEELVSGLNIKRGDVIIDMTFGAGGHTKFIMENYKHCK----VIALDRDEKAFEI 91 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQ 128 Q+ + +K + FS+L + + G+ + + D G SSMQ D +RGFS Sbjct: 92 AQDLSKKFKGRIIPLLGKFSELDKLLSENGIVENSLNAALLDAGCSSMQFDQPERGFSLV 151 Query: 129 KSGPLDMRM----SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 + GPLDMRM S I+A+DVVN + ++LT I+ G+E+ A I+ +I++ R P Sbjct: 152 RDGPLDMRMDGNRSEGQITAADVVNNLDEEELTEIIYKYGDERNARNISSSIIENR---P 208 Query: 185 FQTTQDLSSLIQKTVYFSKNN---RIHPATRSFQALRIFVNNEI 225 TT +L+ ++ ++ FS+ + R+ R R+F++N I Sbjct: 209 ISTTLELARVV--SMAFSQTSDVFRVDSLGR-----RLFLDNLI 245 >gi|15639375|ref|NP_218824.1| hypothetical protein TP0384 [Treponema pallidum subsp. pallidum str. Nichols] gi|189025617|ref|YP_001933389.1| hypothetical protein TPASS_0384 [Treponema pallidum subsp. pallidum SS14] gi|8134809|sp|O83399|RSMH_TREPA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262825951|sp|B2S2Y1|RSMH_TREPS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|3322662|gb|AAC65368.1| conserved hypothetical protein [Treponema pallidum subsp. pallidum str. Nichols] gi|189018192|gb|ACD70810.1| hypothetical protein TPASS_0384 [Treponema pallidum subsp. pallidum SS14] gi|291059774|gb|ADD72509.1| S-adenosyl-methyltransferase MraW [Treponema pallidum subsp. pallidum str. Chicago] Length = 379 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 95/330 (28%), Positives = 149/330 (45%), Gaps = 53/330 (16%) Query: 20 HVPVLLEKVIALLNPA--------------PGKVILDATFGAGGYSRSFCKMGSNVIAL- 64 H PVL+++ + LL PA G +D T G GG++++F + AL Sbjct: 29 HQPVLVQECLTLLEPAIVGISRGADSTRDGAGAFFIDGTLGDGGHTQAFLHAYPALRALG 88 Query: 65 -DRDPFAVSCGQETMRDYKEQFSLF----------------------QATFSQLQDYVPD 101 + DP ++ + + + ++ + Sbjct: 89 VEIDPSMLARARARLTPFGKRLRYVLGWSDVFFASAYASAPASPATGRTAAGAAGVPGAY 148 Query: 102 KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRIL 160 V+ DLG+S RGFSF + LDMR+ + +A+D++N+ L ++ Sbjct: 149 PAPQAVLLDLGISFFHYRGAMRGFSFAEEHMLDMRLDPQASQTAADLLNRLPQARLAQLF 208 Query: 161 GILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI------QKTVYFSKNN-------RI 207 GEE+ A RIA A+ +R+ APF + + + ++ +T F K ++ Sbjct: 209 FEGGEERYARRIAQAVCAQRRQAPFCSARAFAEVVARVVPPMRTARFGKRRGVLGVLPKL 268 Query: 208 HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSG 267 HPAT++FQALRI VN E+E L + L +A AL GG L V+SFHS EDR+VK F + Sbjct: 269 HPATKAFQALRIAVNRELERLPRLLTAAFTALAPGGRLAVISFHSREDRIVKVHFRHWAK 328 Query: 268 KV-MAVRHMIPSNAHPAVFQSITKKVVVPT 296 + R I S A ITKK +VP+ Sbjct: 329 RCSCPARVPICSCGGVARASLITKKPLVPS 358 >gi|320169060|gb|EFW45959.1| methyltransferase [Capsaspora owczarzaki ATCC 30864] Length = 642 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 67/184 (36%), Positives = 102/184 (55%), Gaps = 19/184 (10%) Query: 36 PGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS----CGQETMRDYKEQFSLF 88 P ++LDATFGAGG+S + + + + A+DRDP A+ GQ + +F Sbjct: 223 PPLILLDATFGAGGHSAALLRHAPPNTTLFAIDRDPDAIQRAEQLGQTNSLFHSSRFRPL 282 Query: 89 QATFSQLQDYVPDKG-----VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI- 142 Q +FSQ++ V D+G VDG++ D+G S Q+D RGFSF GPLDMRM Sbjct: 283 QGSFSQMRQLVADQGIQPGSVDGILMDIGFCSTQVDDATRGFSFLCDGPLDMRMGAGTAF 342 Query: 143 ------SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 +A+ V+ ++LT IL + GE +A IA AIV+ R++ P Q+T L+ + + Sbjct: 343 ELAAIPTAATVLATLRCEELTHILRLYGELPKARAIADAIVRTRKTTPIQSTLQLADIAR 402 Query: 197 KTVY 200 + V+ Sbjct: 403 RAVF 406 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 65/156 (41%), Gaps = 46/156 (29%) Query: 209 PATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFAS---- 264 PA + FQALR+FVN+EI EL GL A L+ GG L V++F E +++F S Sbjct: 487 PARQVFQALRVFVNDEISELRAGLGQAIALLRPGGRLAVITFQGAETTALRRFLQSPTAI 546 Query: 265 -------------------RSGKVMAVRHM----------------IPSNAHPAVFQ--- 286 RS RH+ + SN P F Sbjct: 547 LAADSVRSLDEDAPAASNARSADSSRPRHISLNDRFLAQKLQEFEQMQSNNDPTHFPTSR 606 Query: 287 ----SITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318 ++ K + P++ ++ N R+RSAKL R++ Sbjct: 607 ALPLTVLHKAIGPSEHEIHRNPRARSAKLHVFERSL 642 >gi|225166427|ref|ZP_03728086.1| S-adenosyl-methyltransferase MraW [Opitutaceae bacterium TAV2] gi|224799334|gb|EEG17902.1| S-adenosyl-methyltransferase MraW [Opitutaceae bacterium TAV2] Length = 192 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 69/186 (37%), Positives = 105/186 (56%), Gaps = 3/186 (1%) Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 P DMRM +G+ AS + A L R + GEE+ A+R+ AI R + T Sbjct: 3 APADMRMDPRTGVPASLWLETATDDMLLRAIRDYGEERHATRVVRAIKDARGTGTLSRTA 62 Query: 190 DLSSLIQKTVYFSK--NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 L+ LI + + +IHPATR+FQ +RI +N+E+ L + L +A L++GG+L Sbjct: 63 SLAELIANAIPARDRFSAKIHPATRAFQGIRIAINDELGALERALPAAFALLRSGGVLAA 122 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +SFHSLEDR VK+ F G+ + P++ + +T+K V P+ +++A N R+R Sbjct: 123 ISFHSLEDRPVKQAFRRFCGQPESHDDHRPADLREKFAEPLTRKPVTPSDDELAANPRAR 182 Query: 308 SAKLRA 313 SAKLRA Sbjct: 183 SAKLRA 188 >gi|323445745|gb|EGB02206.1| hypothetical protein AURANDRAFT_69098 [Aureococcus anophagefferens] Length = 335 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 85/244 (34%), Positives = 126/244 (51%), Gaps = 19/244 (7%) Query: 3 SKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPA--PGKVILDATFGAGGYSRSFC-KMG- 58 + +C TM ++ G H P + E+ + L P V +D TFG GG++R K+G Sbjct: 98 ATTCGTMQAS-----GTHTPAMFEECVEALGVEWNPDGVYVDGTFGRGGHTRKILEKLGP 152 Query: 59 -SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQ 117 + D DP AV+ G E +R +F + A FS + + VDGV+ D+G+SS Q Sbjct: 153 KGTLHGFDMDPEAVAVG-EQLRGEDPRFVIHHAPFSSMAAVLAGVAVDGVLLDIGISSPQ 211 Query: 118 IDCGDRGFSFQKSGPLDMRMSC-SGIS-ASDVVNQANVKDLTRILGILGEEKQAS--RIA 173 +D G RGF + GPLDMR G+ A + +A+ +L L G E+ A+ RIA Sbjct: 212 LD-GGRGFKPEVDGPLDMRFDVREGVEDAMGYLRRASRVELAAALEAYGGERPAAARRIA 270 Query: 174 HAI--VKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQG 231 A+ K+ S TT+ + L+++ + +HPA +FQALRI VN E EL +G Sbjct: 271 DAVALAKKDGSLARMTTRPFADLVERA-KGKEYQAMHPAKMTFQALRIVVNREYLELERG 329 Query: 232 LRSA 235 L A Sbjct: 330 LAGA 333 >gi|118354992|ref|XP_001010757.1| MraW methylase family protein [Tetrahymena thermophila] gi|89292524|gb|EAR90512.1| MraW methylase family protein [Tetrahymena thermophila SB210] Length = 422 Score = 112 bits (281), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 75/270 (27%), Positives = 137/270 (50%), Gaps = 29/270 (10%) Query: 20 HVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPF 69 H PVL++K+ +L K ++D T G+ G+++ F + ++ LD DP Sbjct: 100 HYPVLIDKITQVLQEEFYPHSSSHSEKCLVDCTLGSAGHAKHFLQKFPYLYILGLDLDPR 159 Query: 70 AVSCGQETMRDY-----KEQFSLFQATFSQL----------QDYVPDKGVDGVVFDLGVS 114 + + ++ + +F F+ + +++ K + DLG + Sbjct: 160 MLQYINDNVKSQLSHSDQNRFKTRNENFTNIDKINLYKIFEEEFPSYKNFHAIFADLGYN 219 Query: 115 SMQIDCGDRGFSFQKSGPLDMRMSCSGI--SASDVVNQANVKDLTRILGILGEEKQASRI 172 ++ ++ + GFS+ ++G LDMR + S SA+D++N+A+ +L I+ GE+ A I Sbjct: 220 TLHLENSEWGFSYLRNGKLDMRYNQSSQTNSAADILNKASYLELFEIIRQYGEDPNADVI 279 Query: 173 AHAIVKRRQSAPFQTTQDLSSLI--QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQ 230 + I+K+RQ PF+TT+D+ LI ++ Y K + T+ FQALRI N E+ L Sbjct: 280 SQMIIKQRQIKPFETTKDVVDLILEDQSGYSFKGGQYKAITKLFQALRIATNQELTNLQV 339 Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKK 260 + L GL I+++FHSLE+ +V++ Sbjct: 340 FMDKIYDKLLKDGLGIIITFHSLEENIVEQ 369 >gi|46203082|ref|ZP_00052107.2| COG0275: Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Magnetospirillum magnetotacticum MS-1] Length = 141 Score = 112 bits (280), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 60/141 (42%), Positives = 84/141 (59%), Gaps = 5/141 (3%) Query: 41 LDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDY 98 +D TFGAGGY+R+ + VIA+DRDP A+ G + + + L Q F L Sbjct: 1 MDGTFGAGGYTRALLDAAPEAQVIAIDRDPTAIRAGADLVAAANGRLRLIQGRFGDLDTL 60 Query: 99 VPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKD 155 + ++G D VV D+GVSSMQ+D RGFSF++ GPLDMRM G +A+D+VN+ Sbjct: 61 LAEQGEAQADWVVLDIGVSSMQLDEAHRGFSFRQDGPLDMRMGGEGPTAADLVNETEEGM 120 Query: 156 LTRILGILGEEKQASRIAHAI 176 L IL GEE+++ +A AI Sbjct: 121 LADILYHFGEERRSRAVARAI 141 >gi|56808163|ref|ZP_00365945.1| COG0275: Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Streptococcus pyogenes M49 591] Length = 215 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 72/206 (34%), Positives = 113/206 (54%), Gaps = 10/206 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGS--NVIALDRDPFAVSCGQE 76 HV VLL + + +L+ P + +DAT G G+S K+G ++ D+D A+ Q Sbjct: 7 HVTVLLHETVDMLDIKPDGIYVDATLGGSGHSAYLLSKLGEEGHLYCFDQDQKAIDNAQV 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSG 131 T++ Y K Q + + F L+ + GVD G+++DLGVSS Q+D +RGFS+++ Sbjct: 67 TLKSYIDKGQVTFIKDNFRHLKARLTALGVDEIDGILYDLGVSSPQLDERERGFSYKQDA 126 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S ++A +VVN DL +I GE+K + +IA I + R P + T + Sbjct: 127 PLDMRMDRQSLLTAYEVVNTYPFNDLVKIFFKYGEDKFSKQIARKIEQARAIKPIEATTE 186 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQ 215 L+ LI+ + + HPA + FQ Sbjct: 187 LAELIKAAKPAKELKKKGHPAKQIFQ 212 >gi|210610079|ref|ZP_03288258.1| hypothetical protein CLONEX_00444 [Clostridium nexile DSM 1787] gi|210152690|gb|EEA83696.1| hypothetical protein CLONEX_00444 [Clostridium nexile DSM 1787] Length = 211 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 73/219 (33%), Positives = 113/219 (51%), Gaps = 21/219 (9%) Query: 105 DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGIL 163 D ++ DLGVSSMQID DRGF+++ G LD+R++ G SA++ + +L +L Sbjct: 6 DFILADLGVSSMQIDNPDRGFTYKSEGSLDLRLNPEKGESAAERLKNVTEDELEGMLVEN 65 Query: 164 GEEKQASRIAHAIVKR-RQSAPFQTTQDLSSLIQKTVYFSKNNRIHPAT-----RSFQAL 217 +E A+ IA ++K+ RQ TT L I++ + F A R+FQAL Sbjct: 66 SDEPYAAEIAQQVMKKLRQGEMIDTTTKLYETIEEALSFIPEKERKEAVKKSCQRTFQAL 125 Query: 218 RIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP 277 RI VN+E E L + ALK+GG + +++FHS EDR+VKK F Sbjct: 126 RIDVNSEFEVLYALMEKLPSALKSGGKVAILTFHSGEDRIVKKAFKEWK----------- 174 Query: 278 SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 V+ I V+ P+ ++ N R++S K+R ++ Sbjct: 175 ---KAGVYSEIANDVIRPSAKECVRNSRAKSTKMRWAIK 210 >gi|148228894|ref|NP_001085383.1| methyltransferase like 15 [Xenopus laevis] gi|49258062|gb|AAH71163.1| MGC84490 protein [Xenopus laevis] Length = 191 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 58/125 (46%), Positives = 73/125 (58%), Gaps = 7/125 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 HVPV++ +VI L P G+ ILD TFGAGG++ S + SN+ +ALDRDP A + Q+ Sbjct: 45 HVPVMVNEVIECLAPQEGQTILDLTFGAGGHTTSILRQASNIKILALDRDPAAFAIAQQL 104 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 Y FS+ +D + GV DGV+ D G SSMQ D DRGFS K GP Sbjct: 105 AHGYGPNIQPLLGRFSEAEDLLKSAGVEPGSIDGVLLDAGCSSMQFDTPDRGFSLSKDGP 164 Query: 133 LDMRM 137 LDMRM Sbjct: 165 LDMRM 169 >gi|314923253|gb|EFS87084.1| MraW methylase family protein [Propionibacterium acnes HL001PA1] gi|314967020|gb|EFT11119.1| MraW methylase family protein [Propionibacterium acnes HL082PA2] gi|314980976|gb|EFT25070.1| MraW methylase family protein [Propionibacterium acnes HL110PA3] gi|315091635|gb|EFT63611.1| MraW methylase family protein [Propionibacterium acnes HL110PA4] gi|315093059|gb|EFT65035.1| MraW methylase family protein [Propionibacterium acnes HL060PA1] gi|315103167|gb|EFT75143.1| MraW methylase family protein [Propionibacterium acnes HL050PA2] gi|327327840|gb|EGE69616.1| MraW methylase family protein [Propionibacterium acnes HL103PA1] Length = 201 Score = 109 bits (272), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 72/182 (39%), Positives = 100/182 (54%), Gaps = 5/182 (2%) Query: 135 MRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM SG +A+ ++N+++ DL R+L GEEK A RI AIV R P +T+ L Sbjct: 1 MRMDQSSGRTAAQILNESDPGDLVRMLREYGEEKFADRIVRAIVTERDRQPIETSGRLVE 60 Query: 194 LIQKTVYFS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I + + + + HPA R+FQALRI VN E+E L L A L GG + V+S+H Sbjct: 61 IITEAIPATVRRKRHSHPAKRTFQALRIAVNREMETLPAVLPRALNRLDVGGRIAVLSYH 120 Query: 252 SLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR VK+ F M+P + A F +T+ P ++VA N RS SA+ Sbjct: 121 SLEDRPVKEAFRDACADTAPTGLPMVPESMA-AKFNPVTRGAERPDADEVATNPRSASAR 179 Query: 311 LR 312 LR Sbjct: 180 LR 181 >gi|332836125|ref|XP_508346.3| PREDICTED: methyltransferase like 15 isoform 2 [Pan troglodytes] Length = 279 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 55/142 (38%), Positives = 85/142 (59%), Gaps = 8/142 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCGQET 77 H+PV++++V+ L+P G++ LD TFG+GG++++ + S+++ ALDRDP A + + Sbjct: 72 HIPVMVDEVVHCLSPQKGQIFLDMTFGSGGHTKAILQKESDIVLYALDRDPTAYALAEHL 131 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 Y +Q FSQ + + GV DGV+ DLG SSMQ+D +RGFS +K GP Sbjct: 132 SELYPKQIRAMLGQFSQAEALLMKAGVQPGTFDGVLMDLGCSSMQLDTPERGFSLRKDGP 191 Query: 133 LDMRMSCSGISASDVVNQANVK 154 LDMRM G S + N++ Sbjct: 192 LDMRMD-GGRSTGTCIYPKNIR 212 >gi|119588673|gb|EAW68267.1| methyltransferase 5 domain containing 1, isoform CRA_b [Homo sapiens] Length = 279 Score = 106 bits (265), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 55/142 (38%), Positives = 85/142 (59%), Gaps = 8/142 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCGQET 77 H+PV++++V+ L+P G++ LD TFG+GG++++ + S+++ ALDRDP A + + Sbjct: 72 HIPVMVDEVVHCLSPQKGQIFLDMTFGSGGHTKAILQKESDIVLYALDRDPTAYALAEHL 131 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 Y +Q FSQ + + GV DGV+ DLG SSMQ+D +RGFS +K GP Sbjct: 132 SELYPKQIRAMLGQFSQAEALLMKAGVQPGTFDGVLMDLGCSSMQLDTPERGFSLRKDGP 191 Query: 133 LDMRMSCSGISASDVVNQANVK 154 LDMRM G S + N++ Sbjct: 192 LDMRMD-GGRSTGTCIYPKNIR 212 >gi|115727005|ref|XP_001191227.1| PREDICTED: similar to methyltransferase 5 domain containing 1, partial [Strongylocentrotus purpuratus] gi|115891754|ref|XP_001186015.1| PREDICTED: similar to methyltransferase 5 domain containing 1, partial [Strongylocentrotus purpuratus] Length = 194 Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 69/188 (36%), Positives = 106/188 (56%), Gaps = 14/188 (7%) Query: 143 SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQTTQDLSSLIQ--KTV 199 +A+DVVN + LT+IL GEE A +IA AI+ R + F +T +L+++I T Sbjct: 6 TAADVVNSLDHVTLTQILRTYGEESNAKKIAQAIIDYRTNFNTFSSTSELATVIACCHTH 65 Query: 200 YFSKNNR------IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 +K+NR H AT++FQALRIFVNNE+ ELA + +A ++ GG L V++FHSL Sbjct: 66 RDAKSNRDKLGRHAHTATKTFQALRIFVNNELNELAVAVEAAWDLMRPGGKLAVLTFHSL 125 Query: 254 EDRLVK-----KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 EDR+VK + A R + R + ++ + + + E++ N R+RS Sbjct: 126 EDRVVKRSLQGRHVAERGTSLRQKRVESHKDNGAQKWEVVKRNELCADDEEINMNPRARS 185 Query: 309 AKLRAGMR 316 AKLR ++ Sbjct: 186 AKLRTAIK 193 >gi|225708994|gb|ACO10343.1| S-adenosyl-L-methionine-dependent methyltransferase METT5D1 [Caligus rogercresseyi] Length = 366 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 85/260 (32%), Positives = 128/260 (49%), Gaps = 34/260 (13%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVSCGQET 77 H PV ++V+ +L P ++ LD T+G GG++ + + VIA DRD ++ Sbjct: 33 HTPVFFQEVLDILRPKKDQIFLDTTYGTGGHTNLILDHQPHARVIASDRDVSSIDLAMRM 92 Query: 78 MRDYKE-QFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y + A FS+L ++ G+ DGV+ D G+S +Q G+RGFS + G Sbjct: 93 GQKYPSGSLNAIVARFSELPRHLIRLGLRENTCDGVIIDCGISDIQWG-GERGFSLK--G 149 Query: 132 PLDMRMSCSGI----SASDVVNQANVKDLTRILGILGEEK-QASRIAHAIVKRRQS-APF 185 PLD+RM +AS+V+ L R L G+ K A +A+AIV+ R F Sbjct: 150 PLDLRMDPERYPETPTASEVLQSIRELPLLRPLKNYGKLKTNAKLVANAIVESRYMFNRF 209 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPAT-----------------RSFQALRIFVNNEIEEL 228 T ++L ++ V FS+ R T R+ ALR+FVN+EI +L Sbjct: 210 TTAEELYEVLLDAVKFSEVRRSLFLTTEEASSWEKAFTESLLHRTLTALRMFVNDEINQL 269 Query: 229 AQGLRSAEKALKAGGLLIVV 248 G+R A LK GGLL+VV Sbjct: 270 EYGVRIASHYLKPGGLLLVV 289 >gi|124806575|ref|XP_001350761.1| s-adenosyl-methyltransferase, putative [Plasmodium falciparum 3D7] gi|23496889|gb|AAN36441.1| s-adenosyl-methyltransferase, putative [Plasmodium falciparum 3D7] Length = 508 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 87/314 (27%), Positives = 148/314 (47%), Gaps = 62/314 (19%) Query: 41 LDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQ 96 +DAT G GG++ N +I +D+D A+ + ++ + + L + + Sbjct: 208 IDATLGGGGHTLEILNKIPNCRIIGIDKDIEALYYNKIKLKRFINNNKLKLIHGDYGNIL 267 Query: 97 DYVPD------KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS-------CSGIS 143 + G++ DLGVSS Q+ C DRGFS++ +G LDM M+ S + Sbjct: 268 HLLHLHSLPIFNYYSGILIDLGVSSHQLKCCDRGFSYKYNGILDMNMNKYTESQYLSKLF 327 Query: 144 ASD-----------------------VVNQANVKDLTRILGILGEEKQASRIAHAIVK-R 179 +D ++N ++K L I+ GEEK+A +IA I++ R Sbjct: 328 RNDNEHINDINDIKKNPKNSYNKLHNILNTYSLKKLKFIIDTYGEEKKALKIAKKIIQWR 387 Query: 180 RQSAPFQTTQDLSSLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 +++ TT L ++I T + NN++ +R FQA RI++N E++ L Q L S+ K Sbjct: 388 KENGMILTTFQLKNIILSTCKQNYKSNNKV--LSRVFQAFRIYINQELKTLKQLLISSHK 445 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297 LK G LIV+++HSLE + V+ F K + + V+P+ Sbjct: 446 LLKTGKKLIVITYHSLEKKCVELFIEKNKQKWTKLH-----------------QNVMPSD 488 Query: 298 EDVAFNRRSRSAKL 311 E++ N+ +RSAK+ Sbjct: 489 EEIKLNKSARSAKM 502 >gi|70953007|ref|XP_745633.1| hypothetical protein [Plasmodium chabaudi chabaudi] gi|56526017|emb|CAH81938.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi] Length = 318 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 98/340 (28%), Positives = 160/340 (47%), Gaps = 74/340 (21%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCG 74 DH P+LL + ++DAT G GG++ + F K+ VI++D+D A+ Sbjct: 4 DH-PILLH--------NQNEYMIDATLGGGGHTLEILKKFTKLK--VISIDKDIEAIYYN 52 Query: 75 QETMRDY--KEQFSLFQATFSQ---LQDY--VPD-KGVDGVVFDLGVSSMQIDCGDRGFS 126 + ++ Y + L + L +Y +P ++ DLGVS+ Q+ RGFS Sbjct: 53 KYKLKSYIDTNRLKLIHGNYKDILFLLNYHSLPLFNSYSAILVDLGVSTHQLKSSKRGFS 112 Query: 127 FQKSGPLDMRMSC-------------------------------SGISASDVVNQANVKD 155 ++ + LDM M+ G +++N N+K Sbjct: 113 YKYNNILDMNMNKYTEKEYVENYINKELKQDNEIKELYMTSEIEDGKKIHNILNTYNLKK 172 Query: 156 LTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV--YFSKNNRIHPATRS 213 L I+ GEEK+A +IA I++ R+ T L ++I T + NN++ +R Sbjct: 173 LKYIIQKFGEEKKAFKIAKKIIEWRKQNKEIVTTLLKNIILSTCKNNYKSNNKV--LSRV 230 Query: 214 FQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVR 273 FQA RI+VNNE+ L L S+ K LK GG+LIV+S+HSLE++ + F +++ + Sbjct: 231 FQAFRIYVNNELLSLKNLLLSSHKILKQGGVLIVISYHSLENKYIDLFVKNKTQLWKQI- 289 Query: 274 HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 N HP +VPT +++ N+ SRSAK+ A Sbjct: 290 -----NTHP----------IVPTDQEIKLNKSSRSAKMFA 314 >gi|198413504|ref|XP_002123312.1| PREDICTED: similar to methyltransferase 5 domain containing 1, partial [Ciona intestinalis] Length = 190 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 64/187 (34%), Positives = 110/187 (58%), Gaps = 17/187 (9%) Query: 142 ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYF 201 I+A+DVVN + ++LT I+ G+E+ A I+ +I++ R P TT +L+ ++ ++ F Sbjct: 5 ITAADVVNNLDEEELTEIIYKYGDERNARNISSSIIENR---PISTTLELARVV--SMAF 59 Query: 202 SKNN----------RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 S+ + R H AT++F A+RIFVN+E+ E+ G++++EK L GG + V++FH Sbjct: 60 SQTSDVFRVDSLGRRCHIATKTFMAIRIFVNDELNEICHGIKTSEKYLMNGGKMGVITFH 119 Query: 252 SLEDRLVKKFFAS-RSGKVMAVRHMIPSNAHPA-VFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK+ K V+ + + + + +++P+ E++ N RSRSA Sbjct: 120 SLEDRVVKRMLKQIEISKPFNVKMGVGKRSKTERRYWKREQSLLLPSGEEIEQNPRSRSA 179 Query: 310 KLRAGMR 316 KLR R Sbjct: 180 KLRIATR 186 >gi|205373087|ref|ZP_03225892.1| S-adenosyl-methyltransferase MraW [Bacillus coahuilensis m4-4] Length = 184 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 57/162 (35%), Positives = 89/162 (54%), Gaps = 7/162 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 +H VLL + + L P + +D T G G+S G ++ A D+D A+ Sbjct: 15 NHTTVLLRETVDELKIKPNGIYVDCTLGGAGHSEYLLSQLGEGGHLFAFDQDETALRHAA 74 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + Y ++ + ++ F L+ + + GVDG+++DLGVSS Q+D +RGFS+ P Sbjct: 75 EKLNAYSDKVTYVKSNFRYLKSELTNLGVMGVDGILYDLGVSSPQLDTPERGFSYHHDAP 134 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIA 173 LDMRM G +SA +VVN+ + + L RI GEEK + +IA Sbjct: 135 LDMRMDLQGAVSAYEVVNEWSYEKLVRIFFQYGEEKFSKQIA 176 >gi|323222501|gb|EGA06871.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] Length = 149 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 60/145 (41%), Positives = 89/145 (61%), Gaps = 11/145 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + LN P + +D TFG GG+SR ++G ++A+DRDP A++ Q Sbjct: 7 HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAQ- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 T+ D + FS+ FS L DYV ++ +DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 66 TINDPR--FSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDL 156 LDMRM + G SA++ + A D+ Sbjct: 124 LDMRMDPTRGQSAAEWLQTAEEADI 148 >gi|156095737|ref|XP_001613903.1| S-adenosyl-methyltransferase mraW [Plasmodium vivax SaI-1] gi|148802777|gb|EDL44176.1| S-adenosyl-methyltransferase mraW, putative [Plasmodium vivax] Length = 471 Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 92/331 (27%), Positives = 156/331 (47%), Gaps = 71/331 (21%) Query: 33 NPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDY--KEQFSL 87 NP P + +DAT G GG++ K S VIA+D+D ++ Q+ ++ Y + ++ Sbjct: 154 NP-PVEYFIDATLGGGGHTLEMLKKLAPTSKVIAIDKDIESIYYNQQKLQRYVDANKLTM 212 Query: 88 FQATFSQLQDYVPDKGV------DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS--- 138 + + + G+ G++ DLG S+ Q+ CG RGFS++ +G LDM M Sbjct: 213 IHGDYRYIIHLLHRYGLPLFGSYSGILLDLGASTHQLRCGRRGFSYKHNGLLDMSMDRYT 272 Query: 139 -------C--------SGISASDVVNQAN--------------------VKDLTRILGIL 163 C SG + V QAN + L I+ Sbjct: 273 DEEYARMCREGAERGGSGSNGGFQVKQANRANPQTEPPKRIGEILNTYSPQQLRHIMHTY 332 Query: 164 GEEKQASRIAHAIVKRRQS-APFQTTQDLSSLIQKTVY--FSKNNRIHPATRSFQALRIF 220 G+EK+AS+IA I + R+S TT L ++ T + N ++ +R FQ+ RI+ Sbjct: 333 GQEKKASKIAKKIAQWRKSRGTITTTHQLRDIVLSTCKQNYKANQKV--LSRVFQSFRIY 390 Query: 221 VNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA 280 VN+E++ L + L S+ K L+A L+V+S+HSLE + V++F SR Sbjct: 391 VNDEMKALKEFLLSSYKLLRARKRLVVISYHSLEYQCVERFVHSRKN------------- 437 Query: 281 HPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 +++ I + P++ ++ N+ +RSAK+ Sbjct: 438 ---LWEKINDVDITPSEGELKANKSARSAKM 465 >gi|323219910|gb|EGA04388.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] Length = 159 Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 64/160 (40%), Positives = 98/160 (61%), Gaps = 8/160 (5%) Query: 163 LGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVN 222 GEE+ A RIA AIV+R + P T++L+ ++ K+ HPATR+FQA+RI+VN Sbjct: 1 FGEERFAKRIARAIVERNREQPMTRTKELAEVVAAATPV-KDKFKHPATRTFQAVRIWVN 59 Query: 223 NEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF--ASRSGKVMAVRHMIPSNA 280 +E+EE+ Q L+S+ L GG L ++SFHSLEDR+VK+F SR ++ A M + Sbjct: 60 SELEEIEQALKSSLSVLAPGGRLSIISFHSLEDRIVKRFMREQSRGPQIPAGLPMTEAQL 119 Query: 281 HP---AVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 +++ K ++P +++VA N R+RS+ LR RT Sbjct: 120 KKLGGRELRALGK--LMPGEKEVAENPRARSSVLRIAERT 157 >gi|258539486|ref|YP_003173985.1| S-adenosyl-methyltransferase MraW [Lactobacillus rhamnosus Lc 705] gi|257151162|emb|CAR90134.1| S-adenosyl-methyltransferase MraW [Lactobacillus rhamnosus Lc 705] Length = 214 Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 72/203 (35%), Positives = 101/203 (49%), Gaps = 9/203 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H VLL++ A L +DAT G GG++R +N +IA D+D A++ + Sbjct: 6 HETVLLKEATAALAVKSDGTYVDATLGRGGHTRQILNQLTNGRLIAFDQDEAAIAAVKRH 65 Query: 78 MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 Q +L F L + D + VDGV++DLGVSS Q D RGFS++ PLD Sbjct: 66 FGTLPPQLTLVHRNFRDLSAALADLDIRQVDGVLYDLGVSSPQFDDSKRGFSYRFDAPLD 125 Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM + A +VN+ +L RI GEE + +IA I + R AP TT L Sbjct: 126 MRMDQRQTLDAKTIVNEWPYAELVRIFSRYGEEHFSKQIARRIEQARAQAPITTTFQLVE 185 Query: 194 LIQKTVYFSKNNRI--HPATRSF 214 LI+ + +K R HPA +S Sbjct: 186 LIKAGIP-AKARRTGGHPAKKSL 207 >gi|221061767|ref|XP_002262453.1| SAM dependent methyltransferase [Plasmodium knowlesi strain H] gi|193811603|emb|CAQ42331.1| SAM dependent methyltransferase, putative [Plasmodium knowlesi strain H] Length = 507 Score = 102 bits (254), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 87/342 (25%), Positives = 160/342 (46%), Gaps = 78/342 (22%) Query: 29 IALLNPAPGKVILDATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQETMRDY--K 82 ++L+ + +DAT G GG++ +SF + S V+A+D+D ++ ++ ++ Y Sbjct: 179 VSLMQNTSPEYYIDATLGGGGHTLEILKSFPRT-SRVVAIDKDIESIYYSKQKLQCYVDT 237 Query: 83 EQFSLFQATFSQLQDYVPDKGV------DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM- 135 + ++ + + + G+ G++ DLGVS+ Q+ CG RGFS+Q +G LDM Sbjct: 238 NKLTMIHGDYRYIIHLLHRHGLPLFGRYSGILLDLGVSTHQLKCGRRGFSYQHNGLLDMS 297 Query: 136 ----------RMSCSGISASD---------------------------------VVNQAN 152 RM I + ++N + Sbjct: 298 IDRYTDEEYDRMCRESIEREEGGSNEDYQYDQTNQIKRAKGESPQSEPKKGIGEILNTYS 357 Query: 153 VKDLTRILGILGEEKQASRIAHAIVK-RRQSAPFQTTQDLSSLIQKTV--YFSKNNRIHP 209 + L I+ G+EK+A +IA IV+ R+ S +TT L ++ T + N ++ Sbjct: 358 AQQLRFIMHTYGQEKKAYKIAKKIVQWRKSSGTIRTTYQLRDIVLSTCKKNYKANQKV-- 415 Query: 210 ATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKV 269 +R FQ+ RI++N+E++ L + L S+ K L+A L+V+S+HSLE + V+ F SR Sbjct: 416 LSRVFQSFRIYINDEMKALKEFLLSSYKLLRAKKRLVVISYHSLEYKCVEMFVHSRKN-- 473 Query: 270 MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 +++ I + P +E++ N+ +RSAK+ Sbjct: 474 --------------LWKKINDVDITPNEEELKANKSARSAKM 501 >gi|21410962|gb|AAH30997.1| METT5D1 protein [Homo sapiens] Length = 212 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 58/163 (35%), Positives = 91/163 (55%), Gaps = 16/163 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCGQET 77 H+PV++++V+ L+P G++ LD TFG+GG++++ + S+++ ALDRDP A + + Sbjct: 5 HIPVMVDEVVHCLSPQKGQIFLDMTFGSGGHTKAILQKESDIVLYALDRDPTAYALAEHL 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 Y +Q FSQ + + GV DGV+ DLG SSMQ+D +RGFS +K G Sbjct: 65 SELYPKQIRAMLGQFSQAEALLMKAGVQPGTFDGVLMDLGCSSMQLDTPERGFSLRKDGS 124 Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175 LDMRM G S + N++ GE Q +R ++ Sbjct: 125 LDMRMD-GGRSTGTCIYPKNIRG--------GEACQENRFSNC 158 >gi|82595835|ref|XP_726012.1| s-adenosyl-methyltransferase Mraw [Plasmodium yoelii yoelii str. 17XNL] gi|23481241|gb|EAA17577.1| s-adenosyl-methyltransferase mraw-related [Plasmodium yoelii yoelii] Length = 493 Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 92/329 (27%), Positives = 156/329 (47%), Gaps = 73/329 (22%) Query: 40 ILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQ- 94 ++DAT G GG++ K N VI++D+D A+ + +R Y K + + + Sbjct: 179 LIDATLGGGGHTLEMLKKFKNLKVISIDKDIEAIYYNKYKLRSYINKNRLKIIHGNYKDI 238 Query: 95 --LQDY--VPD-KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS----------- 138 L +Y +P ++ DLGVS+ QI RGFS++ + LDM M+ Sbjct: 239 LFLLNYYSLPIFNTYSAILVDLGVSTHQIKSSKRGFSYKYNDILDMNMNKYTEKEYIENH 298 Query: 139 -------------------------------CSGISASDVVNQANVKDLTRILGILGEEK 167 G +++N N+K L I+ GEEK Sbjct: 299 INKELKQDTKIKELYMINESHDDDKNIYHKNYDGKKIHNILNTYNLKKLKYIIQKFGEEK 358 Query: 168 QASRIAHAIVK-RRQSAPFQTTQDLSSLIQKTV--YFSKNNRIHPATRSFQALRIFVNNE 224 +A +IA I++ R+++ TT DL ++I T + NN++ +R FQ+ RI++NNE Sbjct: 359 KAYKIAKKIIEWRKKNGEIITTFDLKNIILSTCKNNYKSNNKV--LSRVFQSFRIYINNE 416 Query: 225 IEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV 284 + L L S+ K LK GG+LI++S+HSLE++ + F +++ + Sbjct: 417 LLSLKNLLLSSHKILKQGGVLILISYHSLENKYIDLFVKNKT----------------KL 460 Query: 285 FQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 + I + ++PT ++V N+ SRSAK+ A Sbjct: 461 WNQINIQPIIPTNQEVKLNKSSRSAKMFA 489 >gi|301102540|ref|XP_002900357.1| S-adenosyl-L-methionine-dependent methyltransferase mraW-like protein [Phytophthora infestans T30-4] gi|262102098|gb|EEY60150.1| S-adenosyl-L-methionine-dependent methyltransferase mraW-like protein [Phytophthora infestans T30-4] Length = 221 Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 65/195 (33%), Positives = 104/195 (53%), Gaps = 18/195 (9%) Query: 20 HVPVLLEKVIALLNPAPGKV-----ILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVS 72 H+PVLL++ + L+ V +D T G GG+SR+ + S+ ++ +D DP +S Sbjct: 19 HIPVLLQETVTALSRNVSDVSKPLYFVDGTAGFGGHSRAILQRFSDARLLCIDCDPEVLS 78 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYV-----PDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 Q + ++ + S +++ L ++ PD+ VDG++ DLG +S D RGFS Sbjct: 79 IAQANLSEFHGRVSFQNGSYADLAKHLEAARFPDE-VDGILVDLGANSFHFDAARRGFSV 137 Query: 128 QKSGPLDMR---MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 GPLDMR + S +A+D VN + LT+I GEE+ A A AIV+ R+ Sbjct: 138 LNDGPLDMRFNQLDASLSTAADAVNSLSEVQLTKIFRDYGEERLAKEFAKAIVREREEKG 197 Query: 185 --FQTTQDLSSLIQK 197 F+TT+DL I++ Sbjct: 198 KVFETTKDLRECIER 212 >gi|205830884|sp|P0C7V9|ME15P_HUMAN RecName: Full=Putative methyltransferase-like protein 15P1; AltName: Full=Methyltransferase 5 domain-containing protein 2; AltName: Full=Methyltransferase-like protein 15 pseudogene 1 gi|119599129|gb|EAW78723.1| hCG2022166, isoform CRA_a [Homo sapiens] Length = 234 Score = 99.4 bits (246), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 50/125 (40%), Positives = 78/125 (62%), Gaps = 7/125 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCGQET 77 H+PV++++V+ L+P G++ LD TFG+GG++++ + S+++ ALDRDP A + + Sbjct: 72 HIPVMVDEVVHCLSPQKGQIFLDMTFGSGGHTKAILQKESDIVLYALDRDPTAYALAEHL 131 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 Y +Q FSQ + + GV DGV+ DLG SSMQ+D +RG S +K GP Sbjct: 132 SELYPKQIRAMLGQFSQAEALLMKAGVQPGTFDGVLMDLGCSSMQLDTPERGSSLRKDGP 191 Query: 133 LDMRM 137 LD+RM Sbjct: 192 LDIRM 196 >gi|72384693|gb|AAZ67638.1| S-adenosyl-methyltransferase putative [Haemophilus parasuis 29755] Length = 187 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 64/173 (36%), Positives = 97/173 (56%), Gaps = 6/173 (3%) Query: 146 DVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNN 205 +VVNQ + + L RI GEEK + +IA I R+ P +TT +L +I++ + +K Sbjct: 10 EVVNQWSYEALVRIFFRYGEEKFSKQIARRIEAHREQQPIETTLELVDVIKEGIP-AKAR 68 Query: 206 RI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFA 263 R HPA R FQA+RI VN+E+ + A + +K GG + V++FHSLEDRL K+ F Sbjct: 69 RKGGHPAKRVFQAIRIAVNDELSAFEDSVEQAIECVKVGGRISVITFHSLEDRLCKQIFQ 128 Query: 264 --SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 + V +IP P + + + +K + T +D+ N R+RSAKLR Sbjct: 129 EFEKGPDVPRGLPVIPEAYTPKL-KRVNRKPITATDDDLNENNRARSAKLRVA 180 >gi|167947445|ref|ZP_02534519.1| S-adenosylmethyl transferase MraW [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 172 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 61/160 (38%), Positives = 90/160 (56%), Gaps = 5/160 (3%) Query: 159 ILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALR 218 +L G+E+ A RIA AIV RQ P TT L+ ++ + + HPATRSFQA+R Sbjct: 14 VLKRYGDERHARRIARAIVAARQVEPILTTGRLAEIVSAANPAWEKGK-HPATRSFQAIR 72 Query: 219 IFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF--ASRSGKVMAVRHMI 276 IF+N E+++L Q L + L+ GG L V+SFHSLEDR+VK+F ++ + A + Sbjct: 73 IFINRELDDLQQFLGQVLEVLRPGGRLAVISFHSLEDRIVKRFMRDQAKGDRFPAGVPVT 132 Query: 277 PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 + P + + K + P ++ N R+RSA LR R Sbjct: 133 QAQLQPRL--KLLGKAIRPGADETESNPRARSAVLRVAER 170 >gi|72025930|ref|XP_795360.1| PREDICTED: similar to methyltransferase 5 domain containing 1 [Strongylocentrotus purpuratus] gi|115727007|ref|XP_001191279.1| PREDICTED: similar to methyltransferase 5 domain containing 1 [Strongylocentrotus purpuratus] Length = 187 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 48/126 (38%), Positives = 72/126 (57%), Gaps = 5/126 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF--CKMGSNVIALDRDPFAVSCGQET 77 H PV++E+V++ P +V +D TFG GG++++ C G V LDRDPFA Q+ Sbjct: 61 HKPVMVEEVLSFFAPQANQVYIDMTFGGGGHTQALMKCAPGITVYGLDRDPFAHQIAQKL 120 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 +K Q FS+++D + + V DG++ D G SS Q D +RGF+ + GPLD Sbjct: 121 SLHHKGQLCPLLGKFSEVKDLLSQREVSMVDGILIDAGCSSFQFDSPERGFALSQDGPLD 180 Query: 135 MRMSCS 140 MRM + Sbjct: 181 MRMDAN 186 >gi|266624100|ref|ZP_06117035.1| S-adenosyl-methyltransferase MraW [Clostridium hathewayi DSM 13479] gi|288864078|gb|EFC96376.1| S-adenosyl-methyltransferase MraW [Clostridium hathewayi DSM 13479] Length = 167 Score = 95.9 bits (237), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 59/163 (36%), Positives = 98/163 (60%), Gaps = 8/163 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGS--NVIALDRDPFAVSCGQ 75 +H VLL + I LN P + +D T G GG++ C+ +G +I +D+D A++ Sbjct: 4 EHKSVLLYEAIDSLNVKPDGIYVDGTLGGGGHALEVCRRLGEYGRLIGIDQDADAIAAAS 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSF-QKSG 131 E +RDY+++ ++ ++ + ++Q + D G+ DG+ DLGVSS Q+D +RGF++ ++ Sbjct: 64 ERLRDYEDRVTIVRSNYEEIQSVLKDLGIEKADGIYLDLGVSSYQLDTPERGFTYREEDA 123 Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIA 173 PLDMRM +A+D+VN + DL RI+ GE+K A IA Sbjct: 124 PLDMRMDQRNTRTAADIVNTYSEFDLYRIIRDYGEDKFAKNIA 166 >gi|294670599|ref|ZP_06735478.1| hypothetical protein NEIELOOT_02324 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307724|gb|EFE48967.1| hypothetical protein NEIELOOT_02324 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 180 Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 66/172 (38%), Positives = 98/172 (56%), Gaps = 10/172 (5%) Query: 151 ANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPA 210 A+ ++ ++ GEE+ + +IA AIV +R TT L+ + + V + + PA Sbjct: 3 ADEDEIHEVIKNYGEERFSRQIARAIVAQRAVGSIDTTGKLAQIAAQNVRTRERGQ-DPA 61 Query: 211 TRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSG--- 267 TR+FQA+RIF+N E+EE+A L A LK+GG L V++FHSLEDR+VK+F S Sbjct: 62 TRTFQAIRIFINRELEEIAAVLPQAAGRLKSGGRLAVIAFHSLEDRIVKQFIKRYSTHAP 121 Query: 268 --KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 K AVR ++ +SI K + + ++VA N R+RSA LR RT Sbjct: 122 LPKWAAVRE---ADLPQPPLKSIGKAIKA-SADEVAANPRARSAVLRIAERT 169 >gi|210610097|ref|ZP_03288259.1| hypothetical protein CLONEX_00445 [Clostridium nexile DSM 1787] gi|210152609|gb|EEA83615.1| hypothetical protein CLONEX_00445 [Clostridium nexile DSM 1787] Length = 265 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 68/216 (31%), Positives = 111/216 (51%), Gaps = 14/216 (6%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF--CKMGS-NVIALDRDPFAVSCG 74 G H+ + +++++ PG+ LDAT G GG++ C G ++ ALD DP Sbjct: 50 GMHISICVKEILDFFQIEPGQKGLDATLGYGGHTLEMLKCLKGEGHLYALDIDPIESVKT 109 Query: 75 QETMRDY---KEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E +++ +E S+ F+ + V + G D ++ DLGVSSMQID DRGF+++ Sbjct: 110 KERLKNLGYGEEMLSIRHLNFADIDQVVEEAGPFDFILADLGVSSMQIDNPDRGFTYKSE 169 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTT 188 G LD+R++ G SA++ + +L +L +E A+ IA ++K+ RQ TT Sbjct: 170 GSLDLRLNPEKGESAAERLKNVTEDELEGMLVENSDEPYAAEIAQQVMKKLRQGEMIDTT 229 Query: 189 QDLSSLIQKTVYFSKNNRIHPAT-----RSFQALRI 219 L I++ + F A R+FQALRI Sbjct: 230 TKLYETIEEALSFIPEKERKEAVKKSCQRTFQALRI 265 >gi|42559483|sp|Q8KTR3|RSMH_TREPR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|21702588|gb|AAM75985.1|AF481102_21 putative protein YabC [Candidatus Tremblaya princeps] Length = 295 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 91/312 (29%), Positives = 141/312 (45%), Gaps = 47/312 (15%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MG--SNVIALDRDPFAVSCGQ 75 +H V++++V+ L + +DAT+G GG+S + +G VIALD C Q Sbjct: 5 EHRSVMIQEVVDNLLTNTSGLYIDATYGTGGHSTALLGCLGPQGKVIALD-------CDQ 57 Query: 76 ETMRDYKE--QFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 D+ + + A F +L Y+ G DG+V DLG S+ Q+ RG S+ Sbjct: 58 SIRFDHTSDPRAAAGHANFRELSGYLRCAEIYGADGIVADLGPSATQVHDAQRGLSYLHP 117 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDL---TRILGILGEEKQA-SRIAHAIVKRRQSAPF 185 GP+DMR+ + + S + + + L R G G K A SRI H + K R + Sbjct: 118 GPIDMRVDPTLRVPLSGRLMRTGLGTLHSSLRCHGFSGRTKAAASRILHIVRKAR----Y 173 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT D+++ N H A +F+ALR N+E + L +R A LK GG L Sbjct: 174 TTTLDVAT----AACGLHNQGKHMAADAFRALRSMANSEPQCLRSLVRHAPAVLKPGGRL 229 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 ++++F S +R+V+ S V+ + V PTQ +V N Sbjct: 230 LILTFDSFGERMVRASIEHASCLVL-------------------MRTVAPTQREVDTNPG 270 Query: 306 SRSAKLRAGMRT 317 +RS+ L RT Sbjct: 271 ARSSLLHVLRRT 282 >gi|289426915|ref|ZP_06428641.1| MraW methylase family protein [Propionibacterium acnes J165] gi|289160004|gb|EFD08182.1| MraW methylase family protein [Propionibacterium acnes J165] Length = 178 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 64/158 (40%), Positives = 85/158 (53%), Gaps = 4/158 (2%) Query: 158 RILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS--KNNRIHPATRSFQ 215 R+L GEEK A RI AIV R P +T+ L +I + + + + HPA R+FQ Sbjct: 2 RMLREYGEEKFADRIVRAIVTERDRQPIETSGRLVEIITEAIPATVRRKRHSHPAKRTFQ 61 Query: 216 ALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVM-AVRH 274 ALRI VN E+E L L A L GG + V+S+HSLEDR VK+ F A Sbjct: 62 ALRIAVNREMETLPAVLPRALDRLDVGGRIAVLSYHSLEDRPVKEAFRDACADTAPAGLP 121 Query: 275 MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 M+P + A F +T+ P ++VA N RS SA+LR Sbjct: 122 MVPESMA-AKFNPVTRGAERPDADEVATNPRSASARLR 158 >gi|312867867|ref|ZP_07728072.1| S-adenosyl-methyltransferase MraW [Streptococcus parasanguinis F0405] gi|311096622|gb|EFQ54861.1| S-adenosyl-methyltransferase MraW [Streptococcus parasanguinis F0405] Length = 186 Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 56/161 (34%), Positives = 87/161 (54%), Gaps = 14/161 (8%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALD 65 MS HH V VLL + I +L+ P + +DAT G G+S ++ A D Sbjct: 1 MSKEFHH-----VTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLTKLNESGHLYAFD 55 Query: 66 RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120 +D A+ + + + E+ + + F L++ + D GV DG+ +DLGVSS Q+D Sbjct: 56 QDQHAIENAKIRLAPFIEKGMVTFIKDNFRHLKERLNDLGVTEIDGICYDLGVSSPQLDE 115 Query: 121 GDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRIL 160 +RGFS++K PLDMRM+ + ++A +VVN + DL RI Sbjct: 116 RERGFSYKKDAPLDMRMNQEASLTAYEVVNSYDYHDLVRIF 156 >gi|325914208|ref|ZP_08176560.1| putative S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Xanthomonas vesicatoria ATCC 35937] gi|325539592|gb|EGD11236.1| putative S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Xanthomonas vesicatoria ATCC 35937] Length = 146 Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 50/121 (41%), Positives = 71/121 (58%), Gaps = 4/121 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HVPVL +V+ L G LD TFG GG++R + G ++ +D+DP A++ ++ Sbjct: 18 HVPVLYTQVLDGLQVTEGGAYLDGTFGRGGHARGVLQHLGPGGRLLVMDKDPEAIAVAEQ 77 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 T + S+ + +F+ L V VDG++ DLGVSS Q+D RGFSF K GPLDMR Sbjct: 78 TFGG-DARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLDVAGRGFSFGKDGPLDMR 136 Query: 137 M 137 M Sbjct: 137 M 137 >gi|198431217|ref|XP_002121381.1| PREDICTED: similar to MGC84490 protein [Ciona intestinalis] Length = 226 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 52/129 (40%), Positives = 73/129 (56%), Gaps = 15/129 (11%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR------SFCKMGSNVIALDRDPFAVSC 73 H+PV+ E++++ LN G VI+D TFGAGG+++ CK VIALDRD A Sbjct: 36 HIPVMAEELVSGLNIKRGDVIIDMTFGAGGHTKFIMENYKHCK----VIALDRDEKAFEI 91 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQ 128 Q+ + +K + FS+L + D G+ + V+ D G SSMQ D +RGFS Sbjct: 92 AQDLSKKFKGRIIPLLGKFSELDKLLSDHGIVENSLNAVLLDAGCSSMQFDQPERGFSLV 151 Query: 129 KSGPLDMRM 137 + GPLDMRM Sbjct: 152 RDGPLDMRM 160 >gi|2738256|gb|AAB94406.1| putative ipaD homolog [Rickettsia typhi str. Wilmington] Length = 124 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 51/126 (40%), Positives = 77/126 (61%), Gaps = 5/126 (3%) Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISAS 145 S F +F +L+ + DG+V DLGVSSMQ+D RGFSF GPLDMRMS G SA Sbjct: 4 SNFADSFGKLKQ----QKFDGIVMDLGVSSMQLDIAGRGFSFLYDGPLDMRMSAQGFSAE 59 Query: 146 DVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNN 205 + VN A+ ++++ ++ G E + RIA I+K R+ A +T+ L+ +++ ++ F K Sbjct: 60 EFVNTADEQEISDVIYKYGNESLSRRIAKNIIKYRKIARIDSTRKLAEIVRYSIGFRK-G 118 Query: 206 RIHPAT 211 +I AT Sbjct: 119 KIAFAT 124 >gi|291546845|emb|CBL19953.1| Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Ruminococcus sp. SR1/5] Length = 282 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 64/196 (32%), Positives = 105/196 (53%), Gaps = 15/196 (7%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF--CKMG-SNVIALDRDPFAVSCG 74 G H+ ++++++I L PG+V DAT G GG++++ C G ++ A D DP + Sbjct: 66 GMHISIMVKEIIDFLEIRPGQVGFDATLGYGGHTKAMLECLRGQGHMYATDVDPEESA-- 123 Query: 75 QETMRDYKEQ------FSLFQATFSQLQDYVPD-KGVDGVVFDLGVSSMQIDCGDRGFSF 127 +T + EQ ++ F + + + G D ++ DLGVSSMQID RGFSF Sbjct: 124 -KTRKRLAEQGFGEDILTIKLQNFCTIDEIAEEVGGFDFILADLGVSSMQIDNPKRGFSF 182 Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPF 185 + GPLD+R++ +GISA+ ++ + ++L +L +E IA AI R+ Sbjct: 183 KVDGPLDLRLNQETGISAAQRLDTISREELAGMLDENSDEPYCEEIAKAITDEIRRGNHI 242 Query: 186 QTTQDLSSLIQKTVYF 201 TT L +I+KT+ F Sbjct: 243 DTTTKLREVIEKTLSF 258 >gi|156329544|ref|XP_001619047.1| hypothetical protein NEMVEDRAFT_v1g152542 [Nematostella vectensis] gi|156201404|gb|EDO26947.1| predicted protein [Nematostella vectensis] Length = 150 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 60/151 (39%), Positives = 80/151 (52%), Gaps = 25/151 (16%) Query: 40 ILDATFGAGGYSRSF-----CKMGSNVIALDRDPFAVSCGQ--ETMRDYKEQFSLFQATF 92 +DATFGAGG++ + CK V A+DRDP AV Q T +YK Q Q F Sbjct: 1 FVDATFGAGGHTCAILNSAKCK----VFAVDRDPVAVEIAQVLSTRPEYKGQLIPLQGKF 56 Query: 93 SQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-------- 139 S L + + + G+ DG++ D+G SSMQ D RGFS K GPLDMRM Sbjct: 57 SDLFELLSNNGIKKESLDGMLLDIGPSSMQFDDPLRGFSLSKDGPLDMRMDSENDTKSSR 116 Query: 140 -SGISASDVVNQANVKDLTRILGILGEEKQA 169 S +A+DVVN + ++L +L G E+ A Sbjct: 117 NSSFTAADVVNSISERELISVLRHYGGERDA 147 >gi|153844085|ref|ZP_01993621.1| MraW methylase family [Vibrio parahaemolyticus AQ3810] gi|149745262|gb|EDM56513.1| MraW methylase family [Vibrio parahaemolyticus AQ3810] Length = 148 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 55/137 (40%), Positives = 78/137 (56%), Gaps = 6/137 (4%) Query: 181 QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 ++ P T L+ LI + S + HPATR+FQA RI++N+E+EE+ L+ A + L Sbjct: 8 ENEPMVRTGQLAKLISEAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAARILA 67 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSITKKVV----VP 295 G L V+SFHSLEDR+VK+F S K V H IP + A S K V P Sbjct: 68 PEGRLSVISFHSLEDRMVKRFIRKES-KGPEVPHGIPLTEAQIKELGSANMKTVGKAIKP 126 Query: 296 TQEDVAFNRRSRSAKLR 312 +++++ N RSRS+ LR Sbjct: 127 SKQEIDMNPRSRSSVLR 143 >gi|237843145|ref|XP_002370870.1| S-adenosyl-methyltransferase mraW, putative [Toxoplasma gondii ME49] gi|211968534|gb|EEB03730.1| S-adenosyl-methyltransferase mraW, putative [Toxoplasma gondii ME49] Length = 1062 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 58/159 (36%), Positives = 83/159 (52%), Gaps = 11/159 (6%) Query: 104 VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGIL 163 +DGV SS ++ G + G LD A+ VVN L I Sbjct: 769 IDGVAAANDSSSHGLENAPSGIGGSRGGNLD---------AAQVVNSLPQAALAYIFKTF 819 Query: 164 GEEKQASRIAHAIVKRRQ-SAPFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFV 221 GEE+ A IA IV+ R+ +TT++L +I+ Y + I +R FQALR++V Sbjct: 820 GEERLAGPIASCIVRYREIHGLLKTTEELRQIIEDCCRYRNPQFVIKTCSRVFQALRMYV 879 Query: 222 NNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKK 260 N E+E L L AE+ LK GG L+++S+HSLEDRL+K+ Sbjct: 880 NQELESLDSLLTHAERLLKPGGRLLILSYHSLEDRLIKQ 918 Score = 42.7 bits (99), Expect = 0.073, Method: Compositional matrix adjust. Identities = 19/34 (55%), Positives = 22/34 (64%) Query: 104 VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 VDG+ DLGVS+ Q+ RGFS GPLDMR Sbjct: 691 VDGIFADLGVSTHQLTAAHRGFSHSIDGPLDMRF 724 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 4/68 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCG 74 +HVPV++ +V+ L + + +D T G GG++ + + G ++A+DRD AV+ Sbjct: 421 EHVPVMVNEVLQYLITSKDGLYIDCTAGGGGHAEAIWRAVEFEGGRLLAIDRDEEAVAAT 480 Query: 75 QETMRDYK 82 + MR + Sbjct: 481 RNRMRQLR 488 >gi|328462958|gb|EGF34770.1| S-adenosyl-methyltransferase MraW [Lactobacillus rhamnosus MTCC 5462] Length = 231 Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 63/182 (34%), Positives = 89/182 (48%), Gaps = 9/182 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H VLL++ A L +DAT G GG++R +N +IA D+D A++ Sbjct: 52 HETVLLKEATAALAVKSDGTYVDATLGRGGHTRQILNQLTNGRLIAFDQDEAAIAAVTRQ 111 Query: 78 MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 Q +L F L + D + VDGV++DLGVSS Q D RGFS++ PLD Sbjct: 112 FGTLPPQLTLVHRNFRDLGAALADLDIRQVDGVLYDLGVSSPQFDDSKRGFSYRFDAPLD 171 Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM + A VN+ +L RI GEE SR+ V+ + P + Q LS+ Sbjct: 172 MRMDQRQTLDAKTXVNEWPYAELVRIFSRYGEEHFLSRLR---VELSKLVPKRRLQPLSN 228 Query: 194 LI 195 L+ Sbjct: 229 LL 230 >gi|221502434|gb|EEE28161.1| S-adenosyl-methyltransferase mraw, putative [Toxoplasma gondii VEG] Length = 1189 Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 58/159 (36%), Positives = 83/159 (52%), Gaps = 11/159 (6%) Query: 104 VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGIL 163 +DGV SS ++ G + G LD A+ VVN L I Sbjct: 896 IDGVAAANDSSSHGLENAPSGIGGSRGGNLD---------AAQVVNSLPQAALAYIFKTF 946 Query: 164 GEEKQASRIAHAIVKRRQ-SAPFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFV 221 GEE+ A IA IV+ R+ +TT++L +I+ Y + I +R FQALR++V Sbjct: 947 GEERLAGPIASCIVRYREIHGLLKTTEELRQIIEDCCRYRNPQFVIKTCSRVFQALRMYV 1006 Query: 222 NNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKK 260 N E+E L L AE+ LK GG L+++S+HSLEDRL+K+ Sbjct: 1007 NQELESLDSLLTHAERLLKPGGRLVILSYHSLEDRLIKQ 1045 Score = 43.1 bits (100), Expect = 0.059, Method: Compositional matrix adjust. Identities = 19/33 (57%), Positives = 22/33 (66%) Query: 104 VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 VDG+ DLGVS+ Q+ RGFS GPLDMR Sbjct: 818 VDGIFADLGVSTHQLTAAHRGFSHSIDGPLDMR 850 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 4/68 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCG 74 +HVPV++ +V+ L + + +D T G GG++ + + G ++A+DRD AV+ Sbjct: 548 EHVPVMVNEVLQYLITSKDGLYIDCTAGGGGHAEAIWRAVEFEGGRLLAIDRDEEAVAAT 607 Query: 75 QETMRDYK 82 + MR + Sbjct: 608 RNRMRQLR 615 >gi|221482188|gb|EEE20549.1| S-adenosyl-methyltransferase mraw, putative [Toxoplasma gondii GT1] Length = 1191 Score = 86.3 bits (212), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 58/159 (36%), Positives = 83/159 (52%), Gaps = 11/159 (6%) Query: 104 VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGIL 163 +DGV SS ++ G + G LD A+ VVN L I Sbjct: 896 IDGVAAANDSSSHGLENAPSGIGGSRGGNLD---------AAQVVNSLPQAALAYIFKTF 946 Query: 164 GEEKQASRIAHAIVKRRQ-SAPFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFV 221 GEE+ A IA IV+ R+ +TT++L +I+ Y + I +R FQALR++V Sbjct: 947 GEERLAGPIASCIVRYREIHGLLKTTEELRQIIEDCCRYRNPQFVIKTCSRVFQALRMYV 1006 Query: 222 NNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKK 260 N E+E L L AE+ LK GG L+++S+HSLEDRL+K+ Sbjct: 1007 NQELESLDSLLTHAERLLKPGGRLVILSYHSLEDRLIKQ 1045 Score = 43.1 bits (100), Expect = 0.064, Method: Compositional matrix adjust. Identities = 19/33 (57%), Positives = 22/33 (66%) Query: 104 VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 VDG+ DLGVS+ Q+ RGFS GPLDMR Sbjct: 818 VDGIFADLGVSTHQLTAAHRGFSHSIDGPLDMR 850 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 4/68 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCG 74 +HVPV++ +V+ L + + +D T G GG++ + + G ++A+DRD AV+ Sbjct: 548 EHVPVMVNEVLQYLITSKDGLYIDCTAGGGGHAEAIWRAVEFEGGRLLAIDRDEEAVAAT 607 Query: 75 QETMRDYK 82 + MR + Sbjct: 608 RNRMRQLR 615 >gi|207109224|ref|ZP_03243386.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori HPKX_438_CA4C1] Length = 158 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 53/154 (34%), Positives = 88/154 (57%), Gaps = 11/154 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVSCGQET 77 H VLL++V+ P V++D T G GG+S++ K +I +D+D FA +E Sbjct: 8 HQSVLLQEVLQAFAPLEKGVLIDCTLGLGGHSKAILSQKPHLKLIGIDKDKFAQEIAKER 67 Query: 78 MRDYKEQFSLFQATFSQ-----LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +++++ +++L F++ L+ + +K + GV+ DLGVSS+Q+D +RGF+F S Sbjct: 68 LKEFEGRYNLLSGGFAKRFKEALETH--NKEIKGVLVDLGVSSLQLDDDNRGFNFH-SHA 124 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGE 165 LDMRM S ++A V+N V L +I GE Sbjct: 125 LDMRMDLESELNAQKVINSYPVIALEKIFKDYGE 158 >gi|13924472|gb|AAK49020.1|AF195898_1 hypothetical protein [Synechococcus sp. PCC 7002] Length = 136 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 49/133 (36%), Positives = 77/133 (57%), Gaps = 7/133 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 H+ VL E+++A L P LD T G GG++ + +V +DRD A++ E Sbjct: 7 HISVLKEELVAGLGVKPEGHYLDVTLGGGGHTELILQQYPDVRVTGVDRDSQAIAAASER 66 Query: 78 MRDYKEQFSLFQATFSQLQDYVPD-KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 ++ + ++F ++ F + Y P + DG++ DLGVSS+Q D GDRGFSF+ PLDMR Sbjct: 67 LKSFGDRFRAVRSNFGE---YQPQGEKFDGIIADLGVSSVQFDQGDRGFSFRFDAPLDMR 123 Query: 137 MS-CSGISASDVV 148 M ++A+D+V Sbjct: 124 MDQQQTLTAADIV 136 >gi|317473098|ref|ZP_07932397.1| MraW methylase [Anaerostipes sp. 3_2_56FAA] gi|316899436|gb|EFV21451.1| MraW methylase [Anaerostipes sp. 3_2_56FAA] Length = 260 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 54/170 (31%), Positives = 92/170 (54%), Gaps = 8/170 (4%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCG 74 G H+ + +++++ L PG+ LDAT G GG+++ K ++ ALD D + Sbjct: 76 GMHISICVKEILEFLQIKPGQTGLDATLGYGGHTQEMLKCLDSKGHLYALDVDAIELEKT 135 Query: 75 QETMRDY---KEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 ++ + E ++ Q F+ + + G D V+ DLGVSSMQID DRGFS++ Sbjct: 136 RKRLEKLGYGPEILTIRQMNFADIDKIAEEAGPFDFVLADLGVSSMQIDNPDRGFSYKTE 195 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 GPLD+R++ G+SA++ + ++L +L +E A IA A+V + Sbjct: 196 GPLDLRLNPEKGVSAAERLRTITRQELQGMLMENSDEPHADVIARAVVSK 245 >gi|33866828|ref|NP_898387.1| hypothetical protein SYNW2298 [Synechococcus sp. WH 8102] gi|33639429|emb|CAE08813.1| conserved hypothetical protein [Synechococcus sp. WH 8102] Length = 215 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 56/163 (34%), Positives = 91/163 (55%), Gaps = 9/163 (5%) Query: 20 HVPVLLEKVI--ALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQ 75 HVPVL E V+ P +++DAT G GG+S + G +I LD+D A + Sbjct: 8 HVPVLSEAVMDAGRQMPRAEGLLIDATLGGGGHSALMLEQQPGLRLIGLDQDATARAAAA 67 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 E + + ++ ++ F++ Y P + V+ DLGVSS Q+D +RGFSF+ GPLDM Sbjct: 68 ERLAPFGDRVTIVATNFAE---YTPPEPALMVLADLGVSSPQLDVAERGFSFRLDGPLDM 124 Query: 136 RMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 RM+ G +A++++++ +L ++ GEE+ + RIA I Sbjct: 125 RMNAVGDGATAAELIDRLEENELADLIYAYGEERLSRRIARRI 167 >gi|255024442|ref|ZP_05296428.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL J1-208] Length = 126 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 45/107 (42%), Positives = 67/107 (62%), Gaps = 3/107 (2%) Query: 208 HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF--ASR 265 HP R+FQA+RI VN+E+ + L A LK GG + V++FHSLEDR+ K+ F A++ Sbjct: 14 HPGKRTFQAIRIAVNDELGAVEDSLEKALTLLKPGGRISVITFHSLEDRITKQLFQEATK 73 Query: 266 SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 + +IP P F+ T+K +VP++E++ N R+RSAKLR Sbjct: 74 RPDLPPGLPVIPDEYKPD-FKLATRKPIVPSEEELEQNNRARSAKLR 119 >gi|145502845|ref|XP_001437400.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124404550|emb|CAK70003.1| unnamed protein product [Paramecium tetraurelia] Length = 277 Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 76/294 (25%), Positives = 138/294 (46%), Gaps = 35/294 (11%) Query: 24 LLEKVIALLNPAPGKVI--LDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMR 79 +LE+V+A I +D T G G +S+ + N ++ LD D + + + Sbjct: 5 ILERVLAFQKKTLKNNIDMVDCTIGTGAHSQILLEHVKNLKILGLDIDERMIKNLPQNIT 64 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 ++ F F + + K D + DLG + Q+ G S++K+ LDMR S Sbjct: 65 AKQDNF----INFYKHKTLSDTKNFDIIFADLGYNINQVYDESYGLSYKKNSLLDMRYSQ 120 Query: 140 S-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198 S +A+D++N + ++L I G +A+++A I+ RQ F+ + ++ + Sbjct: 121 SIQHTAADLLNNRSQQELREIFYHYGNIHKANQLAKIIIDNRQKEKFERANQVVDILNE- 179 Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE-KALKAGGLLIVVSFHSLEDRL 257 S ++I ++FQALRI VN EI L L + + + L+++++FHSLE Sbjct: 180 --LSMGDQI---MKTFQALRIAVNQEINNLNLFLEKVQSQQIVDKQLILIITFHSLEAES 234 Query: 258 VKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 V+KF +M + + + K + P+++++ N RSRSA L Sbjct: 235 VQKF-------IMKFK------------KQFSMKTIKPSEDEIKENPRSRSALL 269 >gi|294670598|ref|ZP_06735477.1| hypothetical protein NEIELOOT_02323 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307723|gb|EFE48966.1| hypothetical protein NEIELOOT_02323 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 146 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 52/128 (40%), Positives = 71/128 (55%), Gaps = 9/128 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMG--SNVIALDRDPFAVSCGQE 76 HV VLL + + LN V +D TFG GG+SR ++G ++ D+DP A++ E Sbjct: 8 HVTVLLHEAVDGLNVVSDGVYVDGTFGRGGHSRLILSRLGEKGRLVVFDKDPQAIAVAHE 67 Query: 77 -TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 RD + S+ FS Q + G+ DG +FDLG+SS QID G RGFSF+ P Sbjct: 68 LAARDGR--VSVIHDGFSSFQTALDGLGIGQIDGTLFDLGISSPQIDDGSRGFSFRFDAP 125 Query: 133 LDMRMSCS 140 LDMRM + Sbjct: 126 LDMRMDTT 133 >gi|213861638|ref|ZP_03386108.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 88 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 41/87 (47%), Positives = 59/87 (67%), Gaps = 1/87 (1%) Query: 169 ASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEEL 228 A RIA AIV+R + P T++L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ Sbjct: 3 AKRIARAIVERNREQPMTRTKELAEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEI 61 Query: 229 AQGLRSAEKALKAGGLLIVVSFHSLED 255 Q L+S+ L GG L ++SFHSLED Sbjct: 62 EQALKSSLNVLAPGGRLSIISFHSLED 88 >gi|33322183|gb|AAQ06812.1|AF496152_1 hypothetical protein [Lactobacillus delbrueckii subsp. lactis] Length = 119 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 42/98 (42%), Positives = 63/98 (64%), Gaps = 1/98 (1%) Query: 103 GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILG 161 G+DG+ +DLGVSS Q+D +RGFS++ LDMRM S A +VNQ + K L +L Sbjct: 15 GIDGIYYDLGVSSPQLDQAERGFSYRFDARLDMRMDQSQDFDAYQLVNQYDQKQLADVLY 74 Query: 162 ILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199 G+EK + +IA IV+RR+ P +TT +L +I++ + Sbjct: 75 RYGDEKFSRQIARKIVERRRVKPIETTFELVEIIKEAI 112 >gi|266624101|ref|ZP_06117036.1| MraW methylase family protein [Clostridium hathewayi DSM 13479] gi|288864070|gb|EFC96368.1| MraW methylase family protein [Clostridium hathewayi DSM 13479] Length = 150 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 54/153 (35%), Positives = 87/153 (56%), Gaps = 14/153 (9%) Query: 172 IAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRI--HPATRSFQALRIFVNNEIEELA 229 IA IV+ R++ +TT +L+ +I++ V +K + HP+ ++FQA+RI +N E+E L Sbjct: 3 IAKHIVRARETKRIETTGELTEIIKEAVP-AKVRAVGGHPSKKTFQAIRIELNQELEVLN 61 Query: 230 QGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---- 285 + + L GG L V++FHSLEDR+VK F + P + V Sbjct: 62 NSIDTMIDLLNPGGRLAVITFHSLEDRIVKIRFRNNENPCTC-----PPDFPVCVCGKVS 116 Query: 286 --QSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 + IT+K VVP++E++ N+RS+S+KLR R Sbjct: 117 KGRVITRKPVVPSEEEINGNKRSKSSKLRVFER 149 >gi|261330354|emb|CBH13338.1| S-adenosyl-methyltransferase mraW-like protein,putative [Trypanosoma brucei gambiense DAL972] Length = 474 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 66/238 (27%), Positives = 122/238 (51%), Gaps = 21/238 (8%) Query: 40 ILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQL 95 +LD T G+G ++ + + G + V+ALD D A+ ++ + ++ ++F + S+ Sbjct: 130 VLDCTLGSGYHAGAVLENGGPYTRVVALDCDHDAMHAARDLVEEFGGDRFRFYCCKMSEA 189 Query: 96 QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP--LDMRMSCS-GISASDVVNQAN 152 + ++ D ++ D GVS Q++ +RGF G LDMR G+ A + +N + Sbjct: 190 KAMFGERSFDAIMIDGGVSDTQLEDPERGFLLDDEGGHRLDMRFGPQMGVGALEYLNTVS 249 Query: 153 VKDLTRILGILG--EEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV-------YFSK 203 L L + G E QA +++ AI +R+ PF ++++ + I++ + S+ Sbjct: 250 QHTLVSSLLVYGLLEYGQAMKMSRAITRRK---PFVDSREVLTCIEQAGDELPEGGWRSQ 306 Query: 204 NNRIH-PATRSF-QALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259 +R P + F +LR +NNE+ EL QG+ +A L+ G L+V S E+RLV+ Sbjct: 307 GSRRKSPMSWKFLTSLRCIINNEMYELRQGIENALLMLRDDGRLVVFSRLPWEERLVR 364 >gi|260889238|ref|ZP_05900501.1| MraW methylase family protein [Leptotrichia hofstadii F0254] gi|260860649|gb|EEX75149.1| MraW methylase family protein [Leptotrichia hofstadii F0254] Length = 129 Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 48/129 (37%), Positives = 78/129 (60%), Gaps = 3/129 (2%) Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 +L+ ++ K++ K+ + HPA R+FQA+RIFVN E+E L++ L A K L G L+V++ Sbjct: 2 ELADIVIKSI--GKSMKRHPAKRTFQAIRIFVNKELEVLSETLDKAVKLLNKNGRLLVIT 59 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK+ F + + I ++ + ITKK ++ + ++ N R+ S Sbjct: 60 FHSLEDRIVKEKFREYEDPCTCPKDIPICVCNKKSLGKIITKKPIIAKKIELEENNRAHS 119 Query: 309 AKLRAGMRT 317 AKLR R+ Sbjct: 120 AKLRIFERS 128 >gi|295115795|emb|CBL36642.1| Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [butyrate-producing bacterium SM4/1] Length = 299 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 92/174 (52%), Gaps = 8/174 (4%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCG 74 G H+ + +++++ + PG+V LDAT G GG++R K ++ LD DP Sbjct: 84 GMHISICVKEILDFFDIRPGQVGLDATLGYGGHTREMLKKLQGQGHIYGLDVDPIESEKT 143 Query: 75 QETMRDY---KEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 ++ + D + ++ F+ + + G D ++ DLGVSSMQID +RGF+++ Sbjct: 144 KKRLADAGFGPDILTVKLMNFADIDKVAEEAGPFDFILADLGVSSMQIDNPERGFTYKYE 203 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 GPLD+RM + G +A++ + + ++ +L +E A I+H + R ++ Sbjct: 204 GPLDLRMDPTRGETAAERLKGMDREEFCGMLMENSDEPYAEEISHTVFSRLETG 257 >gi|289426838|ref|ZP_06428564.1| MraW methylase family protein [Propionibacterium acnes J165] gi|289159927|gb|EFD08105.1| MraW methylase family protein [Propionibacterium acnes J165] Length = 165 Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 46/142 (32%), Positives = 82/142 (57%), Gaps = 9/142 (6%) Query: 20 HVPVLLEKVIALLN---PAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCG 74 H+PV+ +++ LL + +V +D T G GG++ + + +V + +DRD A++ Sbjct: 12 HIPVMRARILDLLAVVLKSGRRVHVDGTLGMGGHAEAVLRRFPDVELVGIDRDQQALTMA 71 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + + ++ L A +L + + D G VD V+ DLG+SS QID +RGFS+ Sbjct: 72 EARLEPFADRVHLVHAVHDELPEVLDDLGLDYVDSVLLDLGLSSFQIDEVERGFSYSVDS 131 Query: 132 PLDMRMS-CSGISASDVVNQAN 152 PLDMRM SG +A+ ++N+++ Sbjct: 132 PLDMRMDQSSGRTAAQILNESD 153 >gi|115691196|ref|XP_001203985.1| PREDICTED: similar to methyltransferase 5 domain containing 1, partial [Strongylocentrotus purpuratus] gi|115735657|ref|XP_001187798.1| PREDICTED: similar to methyltransferase 5 domain containing 1, partial [Strongylocentrotus purpuratus] Length = 140 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 43/114 (37%), Positives = 66/114 (57%), Gaps = 5/114 (4%) Query: 208 HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK-----KFF 262 H AT++FQALRIFVNNE+ ELA + +A ++ GG L V++FHSLEDR+VK + Sbjct: 26 HTATKTFQALRIFVNNELNELAVAVEAAWDLMRPGGKLAVLTFHSLEDRVVKRSLQGRHV 85 Query: 263 ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 A R + R + ++ + + + E++ N R+RSAKLR ++ Sbjct: 86 AERGTSLRQKRVESHKDNGAQKWEVVKRNELCADDEEINMNPRARSAKLRTAIK 139 >gi|218508136|ref|ZP_03506014.1| S-adenosyl-methyltransferase MraW [Rhizobium etli Brasil 5] Length = 71 Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 34/53 (64%), Positives = 43/53 (81%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVS 72 H+PVLLE+V+A L PAPGK+ILD TFGAGGY+ + G+ VIALDRDP A++ Sbjct: 19 HIPVLLEEVLAALAPAPGKLILDGTFGAGGYTSAILAAGAEVIALDRDPTAIA 71 >gi|72392687|ref|XP_847144.1| S-adenosyl-methyltransferase mraW-like protein [Trypanosoma brucei TREU927] gi|62176037|gb|AAX70159.1| S-adenosyl-methyltransferase mraW-like protein, putative [Trypanosoma brucei] gi|70803174|gb|AAZ13078.1| S-adenosyl-methyltransferase mraW-like protein, putative [Trypanosoma brucei brucei strain 927/4 GUTat10.1] Length = 474 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 65/238 (27%), Positives = 120/238 (50%), Gaps = 21/238 (8%) Query: 40 ILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQL 95 +LD T G+G ++ + + G + V+ALD D A+ ++ + ++ ++ + S+ Sbjct: 130 VLDCTLGSGYHAGAVLENGGPYTRVVALDCDHDAMHAARDLVEEFGGDRLRFYCCKMSEA 189 Query: 96 QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP--LDMRMSCS-GISASDVVNQAN 152 + ++ D ++ D GVS Q++ +RGF G LDMR G+ A + +N + Sbjct: 190 KAMFGERSFDAIMIDGGVSDTQLEDPERGFLLDDEGGHRLDMRFGPQMGVGALEYLNTVS 249 Query: 153 VKDLTRILGILG--EEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV-------YFSK 203 L L G E QA +++ AI +R+ PF ++++ + I++ + S+ Sbjct: 250 QHTLVSSLLAYGLLEYGQAMKMSRAITRRK---PFVDSREVLTCIEQAGDELPEGGWRSQ 306 Query: 204 NNRIH-PATRSF-QALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259 +R P + F +LR +NNE+ EL QG+ +A L+ G L+V S E+RLV+ Sbjct: 307 GSRRKSPMSWKFLTSLRCIINNEMYELRQGIENALLMLRDDGRLVVFSRLPWEERLVR 364 >gi|68065600|ref|XP_674783.1| hypothetical protein [Plasmodium berghei strain ANKA] gi|56493579|emb|CAH96215.1| conserved hypothetical protein [Plasmodium berghei] Length = 220 Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 98/169 (57%), Gaps = 21/169 (12%) Query: 146 DVVNQANVKDLTRILGILGEEKQASRIAHAIVK-RRQSAPFQTTQDLSSLIQKTV--YFS 202 D++N N+K L I+ GEEK+A +IA I++ R+++ TT DL ++I T + Sbjct: 64 DILNTYNLKKLKYIIQKFGEEKKAFKIAKKIIEWRKKNGEIITTFDLKNIILSTCKNNYK 123 Query: 203 KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF 262 NN++ +R FQ+ RI++N+E+ L L S+ K LK GG+LIV+S+HSLE++ + F Sbjct: 124 SNNKV--LSRVFQSFRIYINSELLSLKNLLLSSHKILKQGGVLIVISYHSLENKYIDLFV 181 Query: 263 ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 +++ ++ I + +VPT +++ N+ SRSAK+ Sbjct: 182 KNKT----------------KLWNQINIQPIVPTDQEIKLNKSSRSAKM 214 >gi|70927460|ref|XP_736113.1| hypothetical protein [Plasmodium chabaudi chabaudi] gi|56510372|emb|CAH87288.1| hypothetical protein PC302411.00.0 [Plasmodium chabaudi chabaudi] Length = 243 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 71/253 (28%), Positives = 117/253 (46%), Gaps = 59/253 (23%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCG 74 DH P+LL + ++DAT G GG++ + F K+ VI++D+D A+ Sbjct: 4 DH-PILLHN--------QNEYMIDATLGGGGHTLEILKKFTKLK--VISIDKDIEAIYYN 52 Query: 75 QETMRDY--KEQFSLFQATFSQ---LQDY--VPD-KGVDGVVFDLGVSSMQIDCGDRGFS 126 + ++ Y + L + L +Y +P ++ DLGVS+ Q+ RGFS Sbjct: 53 KYKLKSYIDTNRLKLIHGNYKDILFLLNYHSLPLFNSYSAILVDLGVSTHQLKSSKRGFS 112 Query: 127 FQKSGPLDMRMSC-------------------------------SGISASDVVNQANVKD 155 ++ + LDM M+ G +++N N+K Sbjct: 113 YKYNNILDMNMNKYTEKEYVENYINKELKQDNEIKELYMTSEIEDGKKIHNILNTYNLKK 172 Query: 156 LTRILGILGEEKQASRIAHAIVK-RRQSAPFQTTQDLSSLIQKTV--YFSKNNRIHPATR 212 L I+ GEEK+A +IA I++ R+Q+ TT DL ++I T + NN++ +R Sbjct: 173 LKYIIQKFGEEKKAFKIAKKIIEWRKQNKEIVTTFDLKNIILSTCKNNYKSNNKV--LSR 230 Query: 213 SFQALRIFVNNEI 225 FQA RI+VNNE+ Sbjct: 231 VFQAFRIYVNNEL 243 >gi|330981225|gb|EGH79328.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 122 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 47/109 (43%), Positives = 64/109 (58%), Gaps = 6/109 (5%) Query: 208 HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRS- 266 +PATR+FQ LRI VNNE+ +L GL +A AL+ GG L+V+SFHSLEDR+VK F + Sbjct: 10 NPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLVVISFHSLEDRIVKLFMRKLAK 69 Query: 267 GKVMAVRHMIPSNAHPAVFQ---SITKKVVVPTQEDVAFNRRSRSAKLR 312 G+ + +P P F+ I K + + N RSRSA +R Sbjct: 70 GEADNMPRNLPIQYKP--FEPKIKIHGKAQFASDVETKANPRSRSAVMR 116 >gi|307069557|ref|YP_003878034.1| S-adenosyl-methyltransferase MraW [Candidatus Zinderia insecticola CARI] gi|306482817|gb|ADM89688.1| S-adenosyl-methyltransferase MraW [Candidatus Zinderia insecticola CARI] Length = 285 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 60/258 (23%), Positives = 123/258 (47%), Gaps = 25/258 (9%) Query: 17 IGDHVPVLLEKVIALL-NPAPGK-VILDATFGAGGY--SRSFCKMGSNVIALDRDPFAVS 72 I + P+L+ ++ +L N K + +DAT G + + ++A ++D + Sbjct: 3 INNKFPILISEIFNILKNIKINKDIFIDATMGMAKHLKKINKKIEIKKILAFEKDNLIFN 62 Query: 73 CGQETMR-------DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125 + M+ ++K F + + + +++ +FDLG+S QI GF Sbjct: 63 RNKIKMKKIFIVNDNFKNIFKILKLLKIKKINFI--------LFDLGISLFQI-INKNGF 113 Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 S++K+ LDMR++ A ++N + + +I +K +I + I+ R+ Sbjct: 114 SYKKNSLLDMRINNKLNKPAYKILNNYKKEKILKIFNYYRNKKYFFKIVNLIIYNRKKKE 173 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 + T DL ++I+K +KN + ++ FQ +R ++N + L L++ G+ Sbjct: 174 IKKTFDLINIIKKVT--NKNKINNYISKIFQIIRNYINKD--NLKNILKNIILKYLYKGI 229 Query: 245 LIVVSFHSLEDRLVKKFF 262 +I++SFHS+ED ++K F Sbjct: 230 IIIISFHSIEDNIIKNMF 247 >gi|325119263|emb|CBZ54817.1| putative S-adenosyl-methyltransferase mraW [Neospora caninum Liverpool] Length = 1044 Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 44/121 (36%), Positives = 68/121 (56%), Gaps = 5/121 (4%) Query: 142 ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQTTQDLSSLIQKTV- 199 + A+ VVN L I + GEE A IA IV+ R++ + T++L +++ Sbjct: 780 LDAAQVVNGLPQAALASIFKLYGEEPLAELIAACIVRHRETRGTLRATEELREIVEGCCR 839 Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259 Y + I +R FQ ++VN E+E L L AE+ LK GG L+++S+HSLEDRL+K Sbjct: 840 YRNPQFIIKTCSRVFQ---MYVNQELEVLDLLLTHAERLLKPGGRLVILSYHSLEDRLIK 896 Query: 260 K 260 + Sbjct: 897 Q 897 Score = 43.5 bits (101), Expect = 0.042, Method: Compositional matrix adjust. Identities = 22/45 (48%), Positives = 26/45 (57%) Query: 104 VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVV 148 VDG+ DLGVS+ Q++ RGFS GPLDMR SA V Sbjct: 670 VDGIFADLGVSTHQLNAAHRGFSHSIPGPLDMRFGRDKSSACGAV 714 Score = 43.1 bits (100), Expect = 0.054, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 6/105 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGY----SRSFCKMGSNVIALDRDPFAVSCG 74 +HVPV++++V+ L A V +D T G GG+ R+ G ++A+DRD AV Sbjct: 402 EHVPVMVQEVLQYLITAKDGVYVDCTAGGGGHVEAIWRAVASEGGRLLAIDRDEEAVEAT 461 Query: 75 QETMRDY--KEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQ 117 + +R +E L T + ++ G + D G SS++ Sbjct: 462 RNRLRQLQAREGCDLGDTTCTNPREDKVVHGTESAKTDPGSSSVE 506 >gi|258539487|ref|YP_003173986.1| methyltransferase [Lactobacillus rhamnosus Lc 705] gi|257151163|emb|CAR90135.1| Methyltransferase [Lactobacillus rhamnosus Lc 705] Length = 115 Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 41/103 (39%), Positives = 60/103 (58%), Gaps = 3/103 (2%) Query: 212 RSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMA 271 + FQA+RI VN+E+ L L A K + GG + V++F SLEDRLVK F S Sbjct: 7 KVFQAIRIAVNDELSALEASLEQALKLINVGGRISVITFQSLEDRLVKTMFKEVSTVQDV 66 Query: 272 VRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 R + +P A P +Q + +K ++P+ ++A N R+ SAKLR Sbjct: 67 PRGLPVVPEAAQPH-YQLVNRKPILPSAAELAENHRAHSAKLR 108 >gi|322491999|emb|CBZ27273.1| S-adenosyl-methyltransferase mraW-like protein [Leishmania mexicana MHOM/GT/2001/U1103] Length = 489 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 66/256 (25%), Positives = 120/256 (46%), Gaps = 21/256 (8%) Query: 40 ILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDY-KEQFSLFQATFSQL 95 +LD TFG+G ++ + G + V+A+D D A +E + ++ ++F F S+ Sbjct: 144 VLDCTFGSGFHTGVVLENGRPYTRVVAMDCDLEATVSAREIVDEFGADRFRFFARPMSEA 203 Query: 96 QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF--QKSGPLDMRMSCS-GISASDVVNQAN 152 + ++ D V+ D G S Q++ +RGF + LDMR + G+ A + +N Sbjct: 204 KAMFGERSFDAVMIDPGPSLTQLENPERGFLLDDESDHALDMRYGPTHGLGALEYLNTVP 263 Query: 153 VKDLTRILGI--LGEEKQASRIAHAIVKRRQSAPFQTTQDL--------SSLIQKTVYFS 202 L+ L L +Q+ ++A AI +RR PF Q + + L ++ Sbjct: 264 QHALSSALASYELLTPQQSMKLARAIRQRR---PFDGAQRVLEAVEEAGNELPEEGWGTQ 320 Query: 203 KNNRIHPATRSFQ-ALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKF 261 + R + +F +LR VN+E EL++ L++A L+ G L+V S E+RL+ Sbjct: 321 GSRRKTSMSWNFMTSLRCIVNHERHELSEALQNALLLLRTDGRLVVFSRLPWEERLISTT 380 Query: 262 FASRSGKVMAVRHMIP 277 + +++ IP Sbjct: 381 VSQHPHALLSYSEAIP 396 >gi|157869826|ref|XP_001683464.1| S-adenosyl-methyltransferase mraW-like protein [Leishmania major] gi|68126529|emb|CAJ04793.1| S-adenosyl-methyltransferase mraW-like protein [Leishmania major strain Friedlin] Length = 489 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 65/256 (25%), Positives = 121/256 (47%), Gaps = 21/256 (8%) Query: 40 ILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDY-KEQFSLFQATFSQL 95 +LD TFG+G ++ + G + V+A+D D A +E + ++ ++F + S+ Sbjct: 144 VLDCTFGSGFHTGVVLENGRPYTRVVAMDCDVEATVSAREIVDEFGADRFRFYARPMSEA 203 Query: 96 QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF--QKSGPLDMRMSCS-GISASDVVNQAN 152 + ++ D V+ D G SS Q++ +RGF + LDMR + G+ A + +N Sbjct: 204 KAMFGERSFDAVMIDPGPSSTQLENPERGFLLNDESDHALDMRYGPTHGLGALEYLNTVP 263 Query: 153 VKDLTRILGI--LGEEKQASRIAHAIVKRRQSAPFQTTQDL--------SSLIQKTVYFS 202 L+ L L +Q+ ++A AI +RR PF Q + + L ++ Sbjct: 264 QHALSGALASYELLTPQQSMKLARAIRQRR---PFDGAQRVLEAVEEAGNELPEEGWGTQ 320 Query: 203 KNNRIHPATRSFQ-ALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKF 261 + R + +F +LR VN+E EL++ L++A L+ G L+V S E++L+ Sbjct: 321 GSRRKTSMSWNFMTSLRCIVNHERHELSEALQNALLLLRTDGRLVVFSRLPWEEKLISTT 380 Query: 262 FASRSGKVMAVRHMIP 277 + +++ IP Sbjct: 381 ISQHPHALLSYSEAIP 396 >gi|207111120|ref|ZP_03245282.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori HPKX_438_CA4C1] Length = 65 Score = 67.0 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 34/67 (50%), Positives = 45/67 (67%), Gaps = 3/67 (4%) Query: 164 GEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNN 223 GE K+ +IAH I +RR PF+ +DLS + FSKN +IHPAT FQA+RI VN+ Sbjct: 2 GEIKEYKKIAHKIAERRAKKPFKDAKDLSEFLSS---FSKNKKIHPATLVFQAVRIEVNS 58 Query: 224 EIEELAQ 230 E+EEL + Sbjct: 59 ELEELKE 65 >gi|163784407|ref|ZP_02179294.1| hypothetical protein HG1285_12402 [Hydrogenivirga sp. 128-5-R1-1] gi|159880321|gb|EDP73938.1| hypothetical protein HG1285_12402 [Hydrogenivirga sp. 128-5-R1-1] Length = 115 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 39/114 (34%), Positives = 65/114 (57%), Gaps = 8/114 (7%) Query: 19 DHVPVLLEKVIAL--LNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCG 74 +H PVL ++V+ L + + ILDAT G GG+S K N +I LD+D +A+ Sbjct: 3 EHYPVLKDEVVKFFTLIESGKEYILDATVGGGGHSYLILKNFPNRKIIGLDKDDYALKRA 62 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGF 125 +E ++++K ++ L ++ F L + + +D GV+FD GVS Q+ +RGF Sbjct: 63 EEKLKEFKGRYILIKSAFKDLDKVLENLNIDKLAGVLFDFGVSHFQLKL-ERGF 115 >gi|322499261|emb|CBZ34334.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 489 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 73/296 (24%), Positives = 132/296 (44%), Gaps = 40/296 (13%) Query: 40 ILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDY-KEQFSLFQATFSQL 95 +LD TFG+G ++ + G + V+A+D D A +E + ++ ++F + S+ Sbjct: 144 VLDCTFGSGFHTGVVLENGRPYTRVVAMDCDVEATVSAREIVDEFGADRFRFYARPMSEA 203 Query: 96 QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF--QKSGPLDMRMSCS-GISASDVVNQAN 152 + ++ D V+ D G S Q++ +RGF + LDMR + G+ A + +N Sbjct: 204 KAMFGERSFDAVMIDPGPSLTQLENPERGFLLDDESDHALDMRYGPTHGLGALEYLNTVP 263 Query: 153 VKDLTRILGI--LGEEKQASRIAHAIVKRRQSAPFQTTQDL--------SSLIQKTVYFS 202 L+ L L +Q+ ++A AI +RR PF Q + + L ++ Sbjct: 264 QHALSGALASYELLTPQQSMKLARAIRQRR---PFDGAQRVLEAVEEAGNELPEEGWGTQ 320 Query: 203 KNNRIHPATRSFQ-ALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKF 261 + R + +F +LR VN+E EL++ L++A L+ G L+V S E++L+ Sbjct: 321 DSRRKTSMSWNFMTSLRCIVNHERHELSEALQNALLLLRTDGRLVVFSRLPWEEKLISTT 380 Query: 262 FASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 + HP S ++ + + EDV + SR K+ RT Sbjct: 381 ISQ----------------HPHALLSYSEAIPI---EDVQDHGHSRHTKMWIATRT 417 >gi|146087428|ref|XP_001465817.1| S-adenosyl-methyltransferase mraW-like protein [Leishmania infantum JPCM5] gi|134069917|emb|CAM68246.1| S-adenosyl-methyltransferase mraW-like protein [Leishmania infantum JPCM5] Length = 489 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 73/296 (24%), Positives = 132/296 (44%), Gaps = 40/296 (13%) Query: 40 ILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDY-KEQFSLFQATFSQL 95 +LD TFG+G ++ + G + V+A+D D A +E + ++ ++F + S+ Sbjct: 144 VLDCTFGSGFHTGVVLENGRPYTRVVAMDCDVEATVSAREIVDEFGADRFRFYARPMSEA 203 Query: 96 QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF--QKSGPLDMRMSCS-GISASDVVNQAN 152 + ++ D V+ D G S Q++ +RGF + LDMR + G+ A + +N Sbjct: 204 KAMFGERSFDAVMIDPGPSLTQLENPERGFLLDDESDHALDMRYGPTHGLGALEYLNTVP 263 Query: 153 VKDLTRILGI--LGEEKQASRIAHAIVKRRQSAPFQTTQDL--------SSLIQKTVYFS 202 L+ L L +Q+ ++A AI +RR PF Q + + L ++ Sbjct: 264 QHALSGALASYELLTPQQSMKLARAIRQRR---PFDGAQRVLEAVEEAGNELPEEGWGTQ 320 Query: 203 KNNRIHPATRSFQ-ALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKF 261 + R + +F +LR VN+E EL++ L++A L+ G L+V S E++L+ Sbjct: 321 DSRRKTSMSWNFMTSLRCIVNHERHELSEALQNALLLLRTDGRLVVFSRLPWEEKLISTT 380 Query: 262 FASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 + HP S ++ + + EDV + SR K+ RT Sbjct: 381 ISQ----------------HPHALLSYSEAIPI---EDVQDHGHSRHTKMWIATRT 417 >gi|317473099|ref|ZP_07932398.1| S-adenosyl-methyltransferase MraW [Anaerostipes sp. 3_2_56FAA] gi|316899437|gb|EFV21452.1| S-adenosyl-methyltransferase MraW [Anaerostipes sp. 3_2_56FAA] Length = 115 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 41/107 (38%), Positives = 56/107 (52%), Gaps = 18/107 (16%) Query: 212 RSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFAS--RSGKV 269 R+FQALRI VN+E E L + L L GG +++FHS EDRLVKK F R G Sbjct: 24 RTFQALRIDVNSEFEVLYEFLEKLPNVLAKGGRAAILTFHSGEDRLVKKSFKRLLREG-- 81 Query: 270 MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 V+Q I+ V+ P+ E+ N R+RS K+R ++ Sbjct: 82 --------------VYQEISTDVIRPSAEECRMNSRARSTKMRWAIK 114 >gi|322505001|emb|CAM36637.2| S-adenosyl-methyltransferase mraW-like protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 491 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 62/257 (24%), Positives = 123/257 (47%), Gaps = 23/257 (8%) Query: 40 ILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDY-KEQFSLFQATFSQL 95 +LD TFG+G ++ + G + V+A+D D A ++ ++ ++F + S+ Sbjct: 146 VLDCTFGSGFHTGVVLENGRPYTRVVAMDCDVAATVSARKIADEFGAKRFRFYARPMSEA 205 Query: 96 QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF--QKSGPLDMRMSC-SGISASDVVNQAN 152 + ++ D V+ D G S Q++ +RGF + LDMR + A + +N Sbjct: 206 KAMFGERSFDAVMIDPGPSFTQLENPERGFLLGDESDHALDMRYGLMYKLGALEYLNTVP 265 Query: 153 VKDLTRILGI--LGEEKQASRIAHAIVKRRQSAPF-------QTTQDLSSLIQKTVYFSK 203 L+ L L +Q+ ++A AI +RR PF + ++ + + + + S+ Sbjct: 266 QHALSGALASYELLTPQQSMKLARAIRQRR---PFGGAHRVLEVVEEAGNELPEEGWMSQ 322 Query: 204 NNRIHPATRSFQ---ALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKK 260 +R + S+ +LR VN+E +EL++ L++A L+A G L+V S E++L+ Sbjct: 323 GSR-RKTSMSWNFITSLRCIVNHERQELSEALQNALLLLRADGRLVVFSRLLWEEKLISA 381 Query: 261 FFASRSGKVMAVRHMIP 277 + +++ +IP Sbjct: 382 TISQHPHALLSYSEVIP 398 >gi|322827176|gb|EFZ31465.1| S-adenosyl-methyltransferase mraW-like protein, putative [Trypanosoma cruzi] Length = 516 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 65/256 (25%), Positives = 121/256 (47%), Gaps = 21/256 (8%) Query: 40 ILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDY-KEQFSLFQATFSQL 95 +LD T G G ++ + + G + V+ALD D + E + ++ ++F F S+ Sbjct: 172 VLDCTLGGGYHAGAVLENGGPYTRVVALDCDHDVMQTAMELVDEFGADRFKFFCRQMSEA 231 Query: 96 QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF--QKSGPLDMRMSCS-GISASDVVNQAN 152 + ++ D V+ D G S Q++ +RGF + S LDMR GI A +N Sbjct: 232 KSLFGERSFDAVMIDPGPSETQLENPERGFLLDDENSHHLDMRYGSQLGIGALAYLNTVP 291 Query: 153 VKDLTRILGILG--EEKQASRIAHAIVKRRQSAPFQTTQDL-------SSLIQKTVYFSK 203 L+ L G +Q+ ++A + RR PF +++D+ ++ + V+ ++ Sbjct: 292 QHALSGALSAYGLLTPEQSMKMAREVRCRR---PFTSSRDVIGCVEAAGDMLPEEVWSTQ 348 Query: 204 NNRIHP--ATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKF 261 ++R + + F +LR +NNE+ EL + L +A L+ G L+V S E+RL++ Sbjct: 349 SSRRKTPMSWKFFTSLRCILNNEMYELREALENALLLLRDDGRLVVFSRLMWEERLIQST 408 Query: 262 FASRSGKVMAVRHMIP 277 S ++ +P Sbjct: 409 VESHPHALLCYTEDVP 424 >gi|71412140|ref|XP_808269.1| S-adenosyl-methyltransferase mraW-like protein [Trypanosoma cruzi strain CL Brener] gi|70872439|gb|EAN86418.1| S-adenosyl-methyltransferase mraW-like protein, putative [Trypanosoma cruzi] Length = 464 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 65/256 (25%), Positives = 121/256 (47%), Gaps = 21/256 (8%) Query: 40 ILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDY-KEQFSLFQATFSQL 95 +LD T G G ++ + + G + V+ALD D + E + ++ ++F F S+ Sbjct: 120 VLDCTLGGGYHAGAVLENGGPYTRVVALDCDHDVMQTAMELVDEFGADRFKFFCRQMSEA 179 Query: 96 QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF--QKSGPLDMRMSCS-GISASDVVNQAN 152 + ++ D V+ D G S Q++ +RGF + S LDMR GI A +N Sbjct: 180 KSLFGERSFDAVMIDPGPSETQLENPERGFLLDDENSHHLDMRYGPQLGIGALAYLNTVP 239 Query: 153 VKDLTRILGILG--EEKQASRIAHAIVKRRQSAPFQTTQDL-------SSLIQKTVYFSK 203 L+ L G +Q+ ++A + RR PF +++D+ ++ + V+ ++ Sbjct: 240 QHALSGALSAYGLLTPEQSMKMAREVRCRR---PFTSSRDVIGCVEAAGDMLPEEVWSTQ 296 Query: 204 NNRIHP--ATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKF 261 ++R + + F +LR +NNE+ EL + L +A L+ G L+V S E+RL++ Sbjct: 297 SSRRKTPMSWKFFTSLRCILNNEMYELREALENALLLLRDDGRLVVFSRLMWEERLIQST 356 Query: 262 FASRSGKVMAVRHMIP 277 S ++ +P Sbjct: 357 VESHPHALLCYTEDVP 372 >gi|154337952|ref|XP_001565202.1| S-adenosyl-methyltransferase mraW-like protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 491 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 62/257 (24%), Positives = 123/257 (47%), Gaps = 23/257 (8%) Query: 40 ILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDY-KEQFSLFQATFSQL 95 +LD TFG+G ++ + G + V+A+D D A ++ ++ ++F + S+ Sbjct: 146 VLDCTFGSGFHTGVVLENGRPYTRVVAMDCDVAATVSARKIADEFGAKRFRFYARPMSEA 205 Query: 96 QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF--QKSGPLDMRMSC-SGISASDVVNQAN 152 + ++ D V+ D G S Q++ +RGF + LDMR + A + +N Sbjct: 206 KAMFGERSFDAVMIDPGPSFTQLENPERGFLLGDESDHALDMRYGLMYKLGALEYLNTVP 265 Query: 153 VKDLTRILGI--LGEEKQASRIAHAIVKRRQSAPF-------QTTQDLSSLIQKTVYFSK 203 L+ L L +Q+ ++A AI +RR PF + ++ + + + + S+ Sbjct: 266 QHALSGALASYELLTPQQSMKLARAIRQRR---PFGGAHRVLEVVEEAGNELPEEGWMSQ 322 Query: 204 NNRIHPATRSFQ---ALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKK 260 +R + S+ +LR VN+E +EL++ L++A L+A G L+V S E++L+ Sbjct: 323 GSR-RKTSMSWNFITSLRCIVNHERQELSEPLQNALLLLRADGRLVVFSRLLWEEKLISA 381 Query: 261 FFASRSGKVMAVRHMIP 277 + +++ +IP Sbjct: 382 TISQHPHALLSYSEVIP 398 >gi|71424845|ref|XP_812929.1| S-adenosyl-methyltransferase mraW-like protein [Trypanosoma cruzi strain CL Brener] gi|70877764|gb|EAN91078.1| S-adenosyl-methyltransferase mraW-like protein, putative [Trypanosoma cruzi] Length = 464 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 65/256 (25%), Positives = 122/256 (47%), Gaps = 21/256 (8%) Query: 40 ILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDY-KEQFSLFQATFSQL 95 +LD T G G ++ + + G + V+ALD D + E + ++ ++F F S+ Sbjct: 120 VLDCTLGGGYHAGAVLENGGPYTRVVALDCDHDVMQTAMELVDEFGADRFKFFCRQMSEA 179 Query: 96 QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF--QKSGPLDMRMSCS-GISASDVVNQAN 152 + ++ D V+ D G S Q++ +RGF + S LDMR GI A +N Sbjct: 180 KSLFGERSFDAVMIDPGPSETQLENPERGFLLDDENSHHLDMRYGPQLGIGALAYLNTVP 239 Query: 153 VKDLTRILGI--LGEEKQASRIAHAIVKRRQSAPFQTTQDL-------SSLIQKTVYFSK 203 L+ L L +Q+ ++A + +RR PF +++D+ ++ + V+ ++ Sbjct: 240 QHALSGALSAYALLTPEQSMKMAREVRRRR---PFTSSRDVIGCVEAAGDMLPEEVWSTQ 296 Query: 204 NNRIHP--ATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKF 261 ++R + + F +LR +NNE+ EL + L +A L+ G L+V S E+RL++ Sbjct: 297 SSRRKTPMSWKFFTSLRCILNNEMYELREALENALLLLRDDGRLVVFSRLVWEERLIQST 356 Query: 262 FASRSGKVMAVRHMIP 277 S ++ +P Sbjct: 357 VESHPHALLCYTEDVP 372 >gi|159470611|ref|XP_001693450.1| predicted protein [Chlamydomonas reinhardtii] gi|158282953|gb|EDP08704.1| predicted protein [Chlamydomonas reinhardtii] Length = 74 Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/76 (44%), Positives = 45/76 (59%), Gaps = 8/76 (10%) Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI--TKKVVVPT 296 L GG L V+SFHSLEDRLVK FA +G+ P + H + +K V+P+ Sbjct: 1 LAPGGRLAVISFHSLEDRLVKHAFARAAGR------PTPEDEHRTRVAVLVGNQKPVLPS 54 Query: 297 QEDVAFNRRSRSAKLR 312 +E+ A N R+RSAKLR Sbjct: 55 EEETARNPRARSAKLR 70 >gi|213026454|ref|ZP_03340901.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 58 Score = 55.5 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 27/58 (46%), Positives = 41/58 (70%), Gaps = 1/58 (1%) Query: 171 RIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEEL 228 RIAHAIV+R + P T++L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ Sbjct: 1 RIAHAIVERNREQPMTRTKELAEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEI 57 >gi|295099855|emb|CBK88944.1| Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Eubacterium cylindroides T2-87] Length = 107 Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 31/93 (33%), Positives = 51/93 (54%) Query: 221 VNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA 280 VN E+ +L L+ K LK G + V++FHSLEDR+VKK F + + + Sbjct: 3 VNQELPQLEVVLKEGLKRLKPHGRMCVITFHSLEDRIVKKIFKEVAVPKKVDKRLPSLGI 62 Query: 281 HPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 +Q + +K V+ +++++ N R+ SAKLR Sbjct: 63 ENLEYQLVNRKPVLASKQELDTNYRAHSAKLRG 95 >gi|169841872|ref|ZP_02874981.1| Methyltransferase [candidate division TM7 single-cell isolate TM7a] Length = 78 Score = 54.7 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 31/70 (44%), Positives = 45/70 (64%), Gaps = 1/70 (1%) Query: 104 VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGI 162 VD ++ D+GVSS Q+D RGFS++ LDMRM S ISA +VVN + K++ I+ Sbjct: 9 VDRILMDIGVSSNQLDNAKRGFSYRFEARLDMRMDSSLKISAYEVVNDFSEKEIADIIYK 68 Query: 163 LGEEKQASRI 172 GEE ++ +I Sbjct: 69 YGEEPKSRKI 78 >gi|261885262|ref|ZP_06009301.1| S-adenosyl-methyltransferase MraW [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 111 Score = 53.5 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 33/103 (32%), Positives = 58/103 (56%), Gaps = 4/103 (3%) Query: 213 SFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAV 272 +FQA+RI VN E++EL L + + +L ++SFHSLED++ K F + Sbjct: 2 AFQAIRIEVNKELDELNNLLNLIKSSKINNAILDIISFHSLEDKIAKSTFKEWEKSCICD 61 Query: 273 RHMIP---SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 ++ N H ++ + +TKK + P+++++ N RS AK+R Sbjct: 62 NFVMKCECGNNH-SIGKILTKKPITPSEDEIKQNPRSSCAKMR 103 >gi|167951237|ref|ZP_02538311.1| S-adenosyl-methyltransferase MraW [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 119 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 4/82 (4%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MG--SNVIALDRDPFAVSC 73 I H PVLLE+ + LN + +D TFG GG+SR K +G +I +D+DP A+ Sbjct: 4 ITTHRPVLLEEAVTALNITAEGIYIDGTFGRGGHSRRILKVLGERGRLIGIDKDPQAIVH 63 Query: 74 GQETMRDYKEQFSLFQATFSQL 95 G+E + +F++ Q +F+ + Sbjct: 64 GREQLGG-DARFTIVQQSFAMI 84 >gi|56808162|ref|ZP_00365944.1| COG0275: Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Streptococcus pyogenes M49 591] Length = 95 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 2/88 (2%) Query: 230 QGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSI 288 + ++ A + L G + V++FHSLEDRL K+ F S V +IP + P F+ + Sbjct: 6 EYIQDAMELLALDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPLIPEDMKPK-FELV 64 Query: 289 TKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 ++K ++P+ ++ N+R+ SAKLR + Sbjct: 65 SRKPILPSHSELTANKRAHSAKLRVAKK 92 >gi|225389940|ref|ZP_03759664.1| hypothetical protein CLOSTASPAR_03690 [Clostridium asparagiforme DSM 15981] gi|225043994|gb|EEG54240.1| hypothetical protein CLOSTASPAR_03690 [Clostridium asparagiforme DSM 15981] Length = 111 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 29/104 (27%), Positives = 55/104 (52%), Gaps = 5/104 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MG-SNVIALDRDPFAVSCGQET 77 H VLL + + LN PG +D T G GG++ K +G +I +D+D A+ + Sbjct: 8 HTSVLLYETVGSLNIIPGGCYVDGTLGGGGHALEVLKRLGHGRLIGIDQDEDAIRAAGQR 67 Query: 78 MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQI 118 ++ + ++ ++ + + ++ + + VDG+ DLGVSS Q+ Sbjct: 68 LKAFADKVTIVRDNYRNIRSVLEQLSVEKVDGIYLDLGVSSYQL 111 >gi|118594403|ref|ZP_01551750.1| S-adenosyl-methyltransferase MraW [Methylophilales bacterium HTCC2181] gi|118440181|gb|EAV46808.1| S-adenosyl-methyltransferase MraW [Methylophilales bacterium HTCC2181] Length = 98 Score = 50.4 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 6/86 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQE 76 H+PVLL + I LN P LD TFG GG+S+ K ++A+D+D AV+ G++ Sbjct: 8 HIPVLLNESIDGLNINPAGTYLDCTFGRGGHSKEILKRLNQNGRLVAIDQDLAAVAEGKK 67 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK 102 ++F ++ FS + + V K Sbjct: 68 I---NDKRFDIYHGKFSSMDEIVKKK 90 >gi|312867849|ref|ZP_07728054.1| S-adenosyl-methyltransferase MraW [Streptococcus parasanguinis F0405] gi|311096604|gb|EFQ54843.1| S-adenosyl-methyltransferase MraW [Streptococcus parasanguinis F0405] Length = 84 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 2/79 (2%) Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297 L G + V++FHSLEDRL K+ F S +V IP + P + + + +K ++P+ Sbjct: 4 LAIDGRISVITFHSLEDRLTKQLFKEVSTVEVPKGLPFIPDDLKPKM-ELVNRKPILPSD 62 Query: 298 EDVAFNRRSRSAKLRAGMR 316 E++ N RS SAKLR + Sbjct: 63 EELEDNNRSHSAKLRVARK 81 >gi|153864731|ref|ZP_01997531.1| Bacterial methyltransferase [Beggiatoa sp. SS] gi|152145773|gb|EDN72468.1| Bacterial methyltransferase [Beggiatoa sp. SS] Length = 95 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 3/60 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQ 75 +H PVLL +VI LN +D TFG GG++R+ + V+ALD DP AV GQ Sbjct: 11 EHQPVLLSEVIHALNIHADGTYIDCTFGRGGHTRAILNHLEASGRVLALDTDPQAVQAGQ 70 >gi|226328338|ref|ZP_03803856.1| hypothetical protein PROPEN_02232 [Proteus penneri ATCC 35198] gi|225203071|gb|EEG85425.1| hypothetical protein PROPEN_02232 [Proteus penneri ATCC 35198] Length = 89 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 6/80 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ + LN P + +D TFG GG+SR ++G +IA+DRDP A++ E Sbjct: 8 HTSVLLDEAVNGLNIKPSGIYIDGTFGRGGHSRLILSQLGEQGRLIAIDRDPQAIAVANE 67 Query: 77 TMRDYKEQFSLFQATFSQLQ 96 +FS+ F L Sbjct: 68 I---DDARFSIVHGPFQILN 84 >gi|33866827|ref|NP_898386.1| hypothetical protein SYNW2297 [Synechococcus sp. WH 8102] gi|33639428|emb|CAE08812.1| conserved hypothetical protein [Synechococcus sp. WH 8102] Length = 83 Score = 47.4 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 35/92 (38%), Positives = 48/92 (52%), Gaps = 17/92 (18%) Query: 221 VNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA 280 +N+E+ L + L+ A L+ GGL+ ++SFHSLEDR VK F Sbjct: 1 MNDELGVLDRLLQQAPDWLEPGGLVGIISFHSLEDRRVKTAFLRDER------------- 47 Query: 281 HPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 + IT+K VV T+E+ N RSRSAK R Sbjct: 48 ----LERITRKPVVATEEEEEANPRSRSAKWR 75 >gi|225159221|ref|ZP_03725523.1| S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis-like protein [Opitutaceae bacterium TAV2] gi|224802168|gb|EEG20438.1| S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis-like protein [Opitutaceae bacterium TAV2] Length = 125 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 3/81 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H+ VLL+ + LL P G LD TFG GG++R+ + V+ALDRDP A+ Sbjct: 34 HISVLLQPTLELLAPRAGGRYLDCTFGGGGHTRALLNAAPDTRVVALDRDPAALPRAAAL 93 Query: 78 MRDY-KEQFSLFQATFSQLQD 97 +Y ++F L F +L + Sbjct: 94 AAEYGSDRFQLIDRDFGRLAE 114 >gi|299143951|ref|ZP_07037031.1| S-adenosyl-methyltransferase MraW [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518436|gb|EFI42175.1| S-adenosyl-methyltransferase MraW [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 83 Score = 45.4 bits (106), Expect = 0.011, Method: Composition-based stats. Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 11/84 (13%) Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA------HPAVFQSITKKV 292 L GG + V+SFHSLEDR+VK+ F K + + P A + IT+K Sbjct: 4 LNPGGRIAVISFHSLEDRIVKETF-----KYYYLDCICPEKAPVCNCGKKREIEIITRKP 58 Query: 293 VVPTQEDVAFNRRSRSAKLRAGMR 316 +V +++++ N R+ SAKLR + Sbjct: 59 IVASEKELIENNRAHSAKLRVAEK 82 >gi|119509472|ref|ZP_01628620.1| Ribosomal L11 methyltransferase [Nodularia spumigena CCY9414] gi|119465878|gb|EAW46767.1| Ribosomal L11 methyltransferase [Nodularia spumigena CCY9414] Length = 315 Score = 43.5 bits (101), Expect = 0.043, Method: Compositional matrix adjust. Identities = 37/128 (28%), Positives = 62/128 (48%), Gaps = 28/128 (21%) Query: 17 IGDHVPVLLEKVIAL---LNPA-------------PGKVILDATFGAGGYSRSFCKMGSN 60 I D + + L+K +A L+PA P +LD G+G S + K+G+N Sbjct: 120 IADKITLKLQKTLAFGSGLHPATIVSLRLVERYITPQMQVLDFGSGSGILSVAMAKLGAN 179 Query: 61 VIALDRDPFAVSCGQET--MRDYKEQFSLFQATF---SQLQDYVPDKGVDGV-------V 108 V+ALD D AV+ QET + + ++Q + Q + S+L ++ V+ V Sbjct: 180 VLALDNDSVAVAATQETVSLNNVEQQVQVIQGSLGCGSELGHWMGVNTVNDVSKVEAKDT 239 Query: 109 FDLGVSSM 116 FDL V+++ Sbjct: 240 FDLIVANI 247 >gi|198284531|ref|YP_002220852.1| TrmA family RNA methyltransferase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667266|ref|YP_002427198.1| 23S rRNA (uracil-5-)-methyltransferase [Acidithiobacillus ferrooxidans ATCC 23270] gi|254766918|sp|B7J921|RUMA_ACIF2 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|254766919|sp|B5EPA4|RUMA_ACIF5 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|198249052|gb|ACH84645.1| RNA methyltransferase, TrmA family [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519479|gb|ACK80065.1| 23S rRNA (uracil-5-)-methyltransferase [Acidithiobacillus ferrooxidans ATCC 23270] Length = 440 Score = 43.5 bits (101), Expect = 0.044, Method: Compositional matrix adjust. Identities = 23/92 (25%), Positives = 49/92 (53%), Gaps = 4/92 (4%) Query: 23 VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY- 81 V++ + +ALL P PG+ ILD G G ++ ++G+ V+ ++ D V+ E Sbjct: 281 VMVRRAMALLQPQPGEHILDLFCGLGNFTLPIARLGAQVLGIEGDARLVALAAENAAANG 340 Query: 82 ---KEQFSLFQATFSQLQDYVPDKGVDGVVFD 110 K ++++ T ++++D+ P +D ++ D Sbjct: 341 LADKARYAVADLTQARMEDFAPAGAIDKMLID 372 >gi|229091804|ref|ZP_04223002.1| Methylase [Bacillus cereus Rock3-42] gi|228691532|gb|EEL45287.1| Methylase [Bacillus cereus Rock3-42] Length = 238 Score = 43.5 bits (101), Expect = 0.050, Method: Compositional matrix adjust. Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 16/99 (16%) Query: 22 PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81 P ++E + L GK ILDA AG Y+ F + G+NV A+D V +E+M + Sbjct: 36 PAMMEMIPKNLE---GKNILDAGCAAGWYTSQFIERGANVTAIDVSSEMVKAAKESMDN- 91 Query: 82 KEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQI 118 +ATF LQD +P + FD+ VSS+ + Sbjct: 92 -------KATFLCHDLQDVLP---FEDNTFDIIVSSLTL 120 >gi|196043260|ref|ZP_03110498.1| ubiquinone/menaquinone biosynthesis methyltransferase [Bacillus cereus 03BB108] gi|225864774|ref|YP_002750152.1| ubiquinone/menaquinone biosynthesis methyltransferase [Bacillus cereus 03BB102] gi|196025569|gb|EDX64238.1| ubiquinone/menaquinone biosynthesis methyltransferase [Bacillus cereus 03BB108] gi|225788114|gb|ACO28331.1| ubiquinone/menaquinone biosynthesis methyltransferase [Bacillus cereus 03BB102] Length = 236 Score = 43.5 bits (101), Expect = 0.051, Method: Compositional matrix adjust. Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 16/99 (16%) Query: 22 PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81 P ++E + L GK ILDA AG Y+ F + G+NV A+D V +E+M + Sbjct: 34 PAMMEMIPKNLE---GKNILDAGCAAGWYTSQFIERGANVTAIDVSSEMVKAAKESMDN- 89 Query: 82 KEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQI 118 +ATF LQD +P + FD+ VSS+ + Sbjct: 90 -------KATFLCHDLQDVLP---FEDNTFDIIVSSLTL 118 >gi|118478155|ref|YP_895306.1| ubiquinone/menaquinone biosynthesis methyltransferase [Bacillus thuringiensis str. Al Hakam] gi|228915398|ref|ZP_04078991.1| Methylase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229185016|ref|ZP_04312206.1| Methylase [Bacillus cereus BGSC 6E1] gi|118417380|gb|ABK85799.1| ubiquinone/menaquinone biosynthesis methyltransferase [Bacillus thuringiensis str. Al Hakam] gi|228598491|gb|EEK56121.1| Methylase [Bacillus cereus BGSC 6E1] gi|228844341|gb|EEM89399.1| Methylase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 238 Score = 43.5 bits (101), Expect = 0.052, Method: Compositional matrix adjust. Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 16/99 (16%) Query: 22 PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81 P ++E + L GK ILDA AG Y+ F + G+NV A+D V +E+M + Sbjct: 36 PAMMEMIPKNLE---GKNILDAGCAAGWYTSQFIERGANVTAIDVSSEMVKAAKESMDN- 91 Query: 82 KEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQI 118 +ATF LQD +P + FD+ VSS+ + Sbjct: 92 -------KATFLCHDLQDVLP---FEDNTFDIIVSSLTL 120 >gi|324326768|gb|ADY22028.1| ubiquinone/menaquinone biosynthesis methyltransferase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 235 Score = 43.5 bits (101), Expect = 0.052, Method: Compositional matrix adjust. Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 16/99 (16%) Query: 22 PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81 P ++E V L GK ILDA AG Y+ F + G+NV A+D V +E+M D Sbjct: 33 PAMMEMVPKKLE---GKSILDAGCAAGWYTSQFVERGANVTAIDVSYEMVKAAKESMGD- 88 Query: 82 KEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQI 118 +ATF LQ+ +P + FD+ VSS+ + Sbjct: 89 -------KATFLCHDLQEILP---FEDHTFDVIVSSLTL 117 >gi|217960240|ref|YP_002338800.1| methylase [Bacillus cereus AH187] gi|217064854|gb|ACJ79104.1| methylase [Bacillus cereus AH187] Length = 235 Score = 43.1 bits (100), Expect = 0.056, Method: Compositional matrix adjust. Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 16/99 (16%) Query: 22 PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81 P ++E V L GK ILDA AG Y+ F + G+NV A+D V +E+M D Sbjct: 33 PAMMEMVPKKLE---GKSILDAGCAAGWYTSQFVERGANVTAIDVSYEMVKAAKESMGD- 88 Query: 82 KEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQI 118 +ATF LQ+ +P + FD+ VSS+ + Sbjct: 89 -------KATFLCHDLQEVLP---FEDHTFDVIVSSLTL 117 >gi|301054319|ref|YP_003792530.1| ubiquinone/menaquinone biosynthesis methyltransferase [Bacillus anthracis CI] gi|300376488|gb|ADK05392.1| ubiquinone/menaquinone biosynthesis methyltransferase [Bacillus cereus biovar anthracis str. CI] Length = 235 Score = 43.1 bits (100), Expect = 0.058, Method: Compositional matrix adjust. Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 16/99 (16%) Query: 22 PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81 P ++E V L GK ILDA AG Y+ F + G+NV A+D V +E+M D Sbjct: 33 PAMMEMVPKKLE---GKSILDAGCAAGWYTSQFVERGANVTAIDVSYEMVKAAKESMGD- 88 Query: 82 KEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQI 118 +ATF LQ+ +P + FD+ VSS+ + Sbjct: 89 -------KATFLCHDLQEVLP---FEDHTFDVIVSSLTL 117 >gi|228985893|ref|ZP_04146041.1| Methylase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228773822|gb|EEM22240.1| Methylase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 238 Score = 43.1 bits (100), Expect = 0.061, Method: Compositional matrix adjust. Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 16/99 (16%) Query: 22 PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81 P ++E V L GK ILDA AG Y+ F + G+NV A+D V +E+M D Sbjct: 36 PAMMEMVPKKLE---GKSILDAGCAAGWYTSQFVERGANVTAIDVSYEMVKAAKESMGD- 91 Query: 82 KEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQI 118 +ATF LQ+ +P + FD+ VSS+ + Sbjct: 92 -------KATFLCHDLQEVLP---FEDHTFDVIVSSLTL 120 >gi|229139436|ref|ZP_04268007.1| Methyltransferase type 11 [Bacillus cereus BDRD-ST26] gi|228643983|gb|EEL00244.1| Methyltransferase type 11 [Bacillus cereus BDRD-ST26] Length = 238 Score = 43.1 bits (100), Expect = 0.063, Method: Compositional matrix adjust. Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 16/99 (16%) Query: 22 PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81 P ++E V L GK ILDA AG Y+ F + G+NV A+D V +E+M D Sbjct: 36 PAMMEMVPKKLE---GKSILDAGCAAGWYTSQFVERGANVTAIDVSYEMVKAAKESMGD- 91 Query: 82 KEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQI 118 +ATF LQ+ +P + FD+ VSS+ + Sbjct: 92 -------KATFLCHDLQEVLP---FEDHTFDVIVSSLTL 120 >gi|228959032|ref|ZP_04120733.1| Methyltransferase type 11 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228800693|gb|EEM47609.1| Methyltransferase type 11 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 235 Score = 43.1 bits (100), Expect = 0.063, Method: Compositional matrix adjust. Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 16/99 (16%) Query: 22 PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81 P ++E + L GK ILDA AG Y+ F K G+NV A+D P V +E + + Sbjct: 33 PAMMELIPKELE---GKKILDAGCAAGWYTSQFIKRGANVTAIDVSPEMVKAAKENIGE- 88 Query: 82 KEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQI 118 +ATF LQ+ +P + +D+ VSS+ + Sbjct: 89 -------EATFLCHDLQETLP---FEDNTYDVIVSSLTL 117 >gi|30020924|ref|NP_832555.1| ubiquinone/menaquinone biosynthesis methyltransferase UBIE [Bacillus cereus ATCC 14579] gi|229128141|ref|ZP_04257123.1| Methyltransferase type 11 [Bacillus cereus BDRD-Cer4] gi|29896477|gb|AAP09756.1| Ubiquinone/menaquinone biosynthesis methyltransferase UBIE [Bacillus cereus ATCC 14579] gi|228655416|gb|EEL11272.1| Methyltransferase type 11 [Bacillus cereus BDRD-Cer4] Length = 235 Score = 43.1 bits (100), Expect = 0.065, Method: Compositional matrix adjust. Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 16/99 (16%) Query: 22 PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81 P ++E + L GK ILDA AG Y+ F K G+NV A+D P V +E + + Sbjct: 33 PAMMELIPKELE---GKKILDAGCAAGWYTSQFIKRGANVTAIDVSPEMVKAAKENIGE- 88 Query: 82 KEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQI 118 +ATF LQ+ +P K +D+ VSS+ + Sbjct: 89 -------EATFLCHDLQETLPFK---DNTYDVIVSSLTL 117 >gi|229046498|ref|ZP_04192153.1| Methyltransferase type 11 [Bacillus cereus AH676] gi|229145375|ref|ZP_04273764.1| Methyltransferase type 11 [Bacillus cereus BDRD-ST24] gi|228638214|gb|EEK94655.1| Methyltransferase type 11 [Bacillus cereus BDRD-ST24] gi|228724860|gb|EEL76162.1| Methyltransferase type 11 [Bacillus cereus AH676] Length = 235 Score = 43.1 bits (100), Expect = 0.066, Method: Compositional matrix adjust. Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 16/99 (16%) Query: 22 PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81 P ++E + L GK ILDA AG Y+ F K G+NV A+D P V +E + + Sbjct: 33 PAMMELIPKELE---GKKILDAGCAAGWYTSQFIKRGANVTAIDVSPEMVKAAKENIGE- 88 Query: 82 KEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQI 118 +ATF LQ+ +P K +D+ VSS+ + Sbjct: 89 -------EATFLCHDLQETLPFK---DNTYDVIVSSLTL 117 >gi|229110250|ref|ZP_04239824.1| Methyltransferase type 11 [Bacillus cereus Rock1-15] gi|228673236|gb|EEL28506.1| Methyltransferase type 11 [Bacillus cereus Rock1-15] Length = 235 Score = 43.1 bits (100), Expect = 0.067, Method: Compositional matrix adjust. Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 16/99 (16%) Query: 22 PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81 P ++E + L GK ILDA AG Y+ F K G+NV A+D P V +E + + Sbjct: 33 PAMMELIPKELE---GKKILDAGCAAGWYTSQFIKRGANVTAIDVSPEMVKAAKENIGE- 88 Query: 82 KEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQI 118 +ATF LQ+ +P K +D+ VSS+ + Sbjct: 89 -------EATFLCHDLQETLPFK---DNTYDVIVSSLTL 117 >gi|239611583|gb|EEQ88570.1| methyltransferase [Ajellomyces dermatitidis ER-3] Length = 279 Score = 42.7 bits (99), Expect = 0.070, Method: Compositional matrix adjust. Identities = 32/131 (24%), Positives = 55/131 (41%), Gaps = 6/131 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDP 68 S+ +HT VP L +KV+ LNP P +LD G G ++ SF +V+ +D Sbjct: 15 WSAEAYHTSAAFVPKLTQKVLQYLNPQPTDRVLDIGCGDGKFTGSFIPHVGSVLGIDASA 74 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 +S + K +F + + + + ++ D VV + + + D R Sbjct: 75 SMISSAKADYGSPKAEFRVVDCRYLDRELDIVERAWDKVVSNAALHWILRDASTR----- 129 Query: 129 KSGPLDMRMSC 139 G L+ SC Sbjct: 130 -VGVLETIYSC 139 >gi|327348403|gb|EGE77260.1| methyltransferase [Ajellomyces dermatitidis ATCC 18188] Length = 279 Score = 42.7 bits (99), Expect = 0.079, Method: Compositional matrix adjust. Identities = 32/131 (24%), Positives = 55/131 (41%), Gaps = 6/131 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDP 68 S+ +HT VP L +KV+ LNP P +LD G G ++ SF +V+ +D Sbjct: 15 WSAEAYHTSAAFVPKLTQKVLQYLNPQPTDRVLDIGCGDGKFTGSFIPHVGSVLGIDASA 74 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 +S + K +F + + + + ++ D VV + + + D R Sbjct: 75 SMISSAKADYGSPKAEFRVVDCRYLDRELDIVERAWDKVVSNAALHWILRDASTR----- 129 Query: 129 KSGPLDMRMSC 139 G L+ SC Sbjct: 130 -VGVLETIYSC 139 >gi|154279200|ref|XP_001540413.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1] gi|150412356|gb|EDN07743.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1] Length = 259 Score = 42.7 bits (99), Expect = 0.082, Method: Compositional matrix adjust. Identities = 27/103 (26%), Positives = 45/103 (43%) Query: 21 VPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRD 80 VP L KV+ LNP P +LD G G ++ SF +V+ +D P +S ++ Sbjct: 26 VPKLAHKVLQYLNPQPTDRVLDVGCGDGKFTSSFIPHIKSVLGVDASPSMISSAKQHYGV 85 Query: 81 YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDR 123 K F + + L+ + + D VV + + + D R Sbjct: 86 PKADFRVVDCRYLDLEQDILNGAWDKVVSNAALHWILKDASTR 128 >gi|74026300|ref|XP_829716.1| hypothetical protein [Trypanosoma brucei TREU927] gi|70835102|gb|EAN80604.1| RNA-binding protein, putative [Trypanosoma brucei] Length = 457 Score = 42.7 bits (99), Expect = 0.082, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 13/114 (11%) Query: 92 FSQLQDYVPDKGVDGVVFDLGVSSMQ-------------IDCGDRGFSFQKSGPLDMRMS 138 FS Q ++PD VDG+ + L V ++ I DR SF + L M Sbjct: 337 FSHHQSFIPDVVVDGLPYWLTVDQLRACFSEYGTVVDVRISIDDRSGSFTGAALLGMSSV 396 Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 I+AS+ +N A +K T + G+L + H +V RR DLS Sbjct: 397 EEAIAASEGLNGATLKGHTLVSGVLDARLNIVSLRHGMVVRRADEMLPEDYDLS 450 >gi|261335754|emb|CBH18748.1| RBP37 [Trypanosoma brucei gambiense DAL972] Length = 458 Score = 42.7 bits (99), Expect = 0.082, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 13/114 (11%) Query: 92 FSQLQDYVPDKGVDGVVFDLGVSSMQ-------------IDCGDRGFSFQKSGPLDMRMS 138 FS Q ++PD VDG+ + L V ++ I DR SF + L M Sbjct: 338 FSHHQSFIPDVVVDGLPYWLTVDQLRACFSEYGTVVDVRISIDDRSGSFTGAALLGMSSV 397 Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 I+AS+ +N A +K T + G+L + H +V RR DLS Sbjct: 398 EEAIAASEGLNGATLKGHTLVSGVLDARLNIVSLRHGMVVRRADEMLPEDYDLS 451 >gi|229156377|ref|ZP_04284472.1| Methylase [Bacillus cereus ATCC 4342] gi|228627100|gb|EEK83832.1| Methylase [Bacillus cereus ATCC 4342] Length = 238 Score = 42.7 bits (99), Expect = 0.087, Method: Compositional matrix adjust. Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 16/99 (16%) Query: 22 PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81 P ++E V L GK ILDA AG Y+ F + G+NV A+D + +E+M D Sbjct: 36 PAMMEMVPKKLE---GKSILDAGCAAGWYTSQFVERGANVTAIDVSYEMIKAAKESMGD- 91 Query: 82 KEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQI 118 +ATF LQ+ +P + FD+ VSS+ + Sbjct: 92 -------KATFLCHDLQEVLP---FEDHTFDVIVSSLTL 120 >gi|300709794|ref|YP_003735608.1| hypothetical protein HacjB3_02115 [Halalkalicoccus jeotgali B3] gi|299123477|gb|ADJ13816.1| hypothetical protein HacjB3_02115 [Halalkalicoccus jeotgali B3] Length = 318 Score = 42.4 bits (98), Expect = 0.093, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 2/89 (2%) Query: 22 PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81 P+L + + PG ILD G GG G+ VI D +E + Y Sbjct: 162 PLLARAIANIAGAGPGATILDPMCGTGGVLVEAGLAGARVIGADAQWKMTHGARENLAHY 221 Query: 82 KEQFSLFQATFSQLQDYVPDKGVDGVVFD 110 +F LF+ +++ + D +DGVVFD Sbjct: 222 DVEFDLFRGDATRIP--LRDGTIDGVVFD 248 >gi|261204928|ref|XP_002627201.1| methyltransferase [Ajellomyces dermatitidis SLH14081] gi|239592260|gb|EEQ74841.1| methyltransferase [Ajellomyces dermatitidis SLH14081] Length = 279 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 32/131 (24%), Positives = 54/131 (41%), Gaps = 6/131 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDP 68 S +HT VP L +KV+ LNP P +LD G G ++ SF +V+ +D Sbjct: 15 WSEEAYHTSAAFVPKLTQKVLQYLNPQPTDRVLDIGCGDGKFTGSFIPHVGSVLGIDASA 74 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 +S + K +F + + + + ++ D VV + + + D R Sbjct: 75 SMISSAKADYGSPKAEFRVVDCRYLDRELDIVERAWDKVVSNAALHWILRDASTR----- 129 Query: 129 KSGPLDMRMSC 139 G L+ SC Sbjct: 130 -VGVLETIYSC 139 >gi|228908546|ref|ZP_04072386.1| Methyltransferase type 11 [Bacillus thuringiensis IBL 200] gi|228851099|gb|EEM95913.1| Methyltransferase type 11 [Bacillus thuringiensis IBL 200] Length = 235 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 16/99 (16%) Query: 22 PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81 P ++E + L GK ILDA AG Y+ F G+NV A+D P V +E++ D Sbjct: 33 PAMMELIPKELE---GKKILDAGCAAGWYTSQFIGRGANVTAIDVSPEMVKAAKESIGD- 88 Query: 82 KEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQI 118 +ATF LQ+ +P + +D+ VSS+ + Sbjct: 89 -------KATFLCHDLQETLP---FEDSTYDVIVSSLTL 117 >gi|42781887|ref|NP_979134.1| methylase [Bacillus cereus ATCC 10987] gi|42737811|gb|AAS41742.1| methylase [Bacillus cereus ATCC 10987] Length = 238 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 16/99 (16%) Query: 22 PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81 P ++E + L GK +LDA AG Y+ F + G+NV A+D V +E+M D Sbjct: 36 PAMMEMIPKRLE---GKSVLDAGCAAGWYTSQFVESGANVTAIDVSSEMVKAAKESMGD- 91 Query: 82 KEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQI 118 +ATF LQ+ +P + FD+ VSS+ + Sbjct: 92 -------KATFLCHDLQEILP---FEDHTFDVIVSSLTL 120 >gi|296817461|ref|XP_002849067.1| cyclopropane-fatty-acyl-phospholipid synthase [Arthroderma otae CBS 113480] gi|238839520|gb|EEQ29182.1| cyclopropane-fatty-acyl-phospholipid synthase [Arthroderma otae CBS 113480] Length = 277 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 3/84 (3%) Query: 26 EKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY--KE 83 EKV LN PG +LDA G+G + K G NV A+D PF V ++ ++ Y ++ Sbjct: 60 EKVYNKLNLKPGARVLDAGAGSGFVAMYMAKKGLNVDAIDLLPFHVEDAKQNVKQYDLED 119 Query: 84 QFSLFQATFSQLQDYVPDKGVDGV 107 + ++ A + L + D DGV Sbjct: 120 KVAVSLADYHNLTQFA-DNSFDGV 142 >gi|206973940|ref|ZP_03234858.1| ubiquinone/menaquinone biosynthesis methyltransferase [Bacillus cereus H3081.97] gi|206748096|gb|EDZ59485.1| ubiquinone/menaquinone biosynthesis methyltransferase [Bacillus cereus H3081.97] Length = 235 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 16/99 (16%) Query: 22 PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81 P ++E V L GK ILDA AG Y+ F + G+NV A+D V +++M D Sbjct: 33 PAMMEMVPKKLE---GKSILDAGCAAGWYTSQFVERGANVTAIDVSYEMVKAAKDSMGD- 88 Query: 82 KEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQI 118 +ATF LQ+ +P + FD+ VSS+ + Sbjct: 89 -------KATFLCHDLQEVLP---FEDHTFDIIVSSLTL 117 >gi|209447527|pdb|3EGE|A Chain A, Crystal Structure Of Putative Methyltransferase From Antibiotic Biosynthesis Pathway (Yp_324569.1) From Anabaena Variabilis Atcc 29413 At 2.40 A Resolution Length = 261 Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 7/90 (7%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83 ++ +I LLN G VI D G GGYS + G V A+ +P V Q + E Sbjct: 22 IVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGLFVYAV--EPSIVXRQQAVVHPQVE 79 Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 F+ + + +PDK VDGV+ L + Sbjct: 80 WFTGYAENLA-----LPDKSVDGVISILAI 104 >gi|222096300|ref|YP_002530357.1| methylase [Bacillus cereus Q1] gi|221240358|gb|ACM13068.1| methylase [Bacillus cereus Q1] Length = 238 Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust. Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 16/99 (16%) Query: 22 PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81 P ++E V L GK ILDA AG Y+ F + G+NV A+D V +++M D Sbjct: 36 PAMMEMVPKKLE---GKSILDAGCAAGWYTSQFVERGANVTAIDVSYEMVKAAKDSMGD- 91 Query: 82 KEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQI 118 +ATF LQ+ +P + FD+ VSS+ + Sbjct: 92 -------KATFLCHDLQEVLP---FEDHTFDIIVSSLTL 120 >gi|213409922|ref|XP_002175731.1| hexaprenyldihydroxybenzoate methyltransferase [Schizosaccharomyces japonicus yFS275] gi|212003778|gb|EEB09438.1| hexaprenyldihydroxybenzoate methyltransferase [Schizosaccharomyces japonicus yFS275] Length = 268 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 27/47 (57%) Query: 33 NPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 N PGK ILD GAG S S ++G++V+ LD P + Q+ M+ Sbjct: 71 NWFPGKRILDVGCGAGILSESLARLGAHVVGLDASPGTIEAAQQHMK 117 >gi|169610059|ref|XP_001798448.1| hypothetical protein SNOG_08123 [Phaeosphaeria nodorum SN15] gi|111063279|gb|EAT84399.1| hypothetical protein SNOG_08123 [Phaeosphaeria nodorum SN15] Length = 222 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 3/107 (2%) Query: 3 SKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI 62 + S + S++ IG + + + LL PG +LDA G+G + + + G NV Sbjct: 40 APSVEAYYSSLESRIGYWLVLGNARHCGLLGLKPGDRVLDAGAGSGYVAMTMARHGLNVQ 99 Query: 63 ALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGVDGV 107 A+D P V+ ++ +R Y +++ + A + L + PD DG+ Sbjct: 100 AIDITPHHVANAKKNVRGYGLQDRIKVDYANYHNLSQF-PDASFDGI 145 >gi|75910273|ref|YP_324569.1| MerR family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75703998|gb|ABA23674.1| putative MerR-family transcriptional regulator [Anabaena variabilis ATCC 29413] Length = 260 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 7/90 (7%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83 ++ +I LLN G VI D G GGYS + G V A+ +P V Q + E Sbjct: 21 IVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGLFVYAV--EPSIVMRQQAVVHPQVE 78 Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 F+ + + +PDK VDGV+ L + Sbjct: 79 WFTGYAENLA-----LPDKSVDGVISILAI 103 >gi|225574953|ref|ZP_03783563.1| hypothetical protein RUMHYD_03032 [Blautia hydrogenotrophica DSM 10507] gi|225037800|gb|EEG48046.1| hypothetical protein RUMHYD_03032 [Blautia hydrogenotrophica DSM 10507] Length = 187 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 5/82 (6%) Query: 36 PGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMR--DYKEQFSLFQA 90 PG + +DAT G G ++ C++ G V+A D A+ +E +R E + L+ Sbjct: 20 PGDLCIDATMGNGKDTQVLCELTGKGGKVLAFDIQECALQATRERLRRAGVPENYELYCR 79 Query: 91 TFSQLQDYVPDKGVDGVVFDLG 112 + + +Y + V +VF+LG Sbjct: 80 SHVHMDEYAKEGSVSCIVFNLG 101 >gi|229196971|ref|ZP_04323711.1| Methylase [Bacillus cereus m1293] gi|228586528|gb|EEK44606.1| Methylase [Bacillus cereus m1293] Length = 238 Score = 41.6 bits (96), Expect = 0.20, Method: Compositional matrix adjust. Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 16/99 (16%) Query: 22 PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81 P ++E V L GK ILDA AG Y+ F + G+NV A+D V +++M D Sbjct: 36 PAMMEMVPKKLE---GKSILDAGCAAGWYTSQFVERGANVTAIDVSYEMVKAAKDSMGD- 91 Query: 82 KEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQI 118 +ATF LQ+ +P + FD+ VSS+ + Sbjct: 92 -------KATFLCHDLQEVLP---FEDHTFDVIVSSLTL 120 >gi|47569063|ref|ZP_00239753.1| ubiquinone/menaquinone biosynthesis methyltransferase UBIE [Bacillus cereus G9241] gi|47554332|gb|EAL12693.1| ubiquinone/menaquinone biosynthesis methyltransferase UBIE [Bacillus cereus G9241] Length = 238 Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust. Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 16/99 (16%) Query: 22 PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81 P ++E V L GK ILDA AG Y+ F + G+NV A+D V +E+M + Sbjct: 36 PAMMEMVPKKLE---GKSILDAGCAAGWYTSQFVERGANVTAIDVSYEMVKAAKESMGE- 91 Query: 82 KEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQI 118 +ATF LQ+ +P + FD+ VSS+ + Sbjct: 92 -------KATFLCHDLQEVLP---FEDHTFDVIVSSLTL 120 >gi|229097318|ref|ZP_04228280.1| Methyltransferase type 11 [Bacillus cereus Rock3-29] gi|228686129|gb|EEL40045.1| Methyltransferase type 11 [Bacillus cereus Rock3-29] Length = 235 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 13/84 (15%) Query: 37 GKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATF--SQ 94 GK ILDA AG Y+ F G+NV A+D P V +E+M + +ATF Sbjct: 45 GKRILDAGCAAGWYTSQFVGRGANVTAIDISPEMVKAVKESMGE--------KATFLCHD 96 Query: 95 LQDYVPDKGVDGVVFDLGVSSMQI 118 LQ+ +P + +D+ VSS+ + Sbjct: 97 LQETLP---FENNTYDIIVSSLTL 117 >gi|116753346|ref|YP_842464.1| protein of unknown function Met10 [Methanosaeta thermophila PT] gi|116664797|gb|ABK13824.1| methyltransferase [Methanosaeta thermophila PT] Length = 328 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 1/76 (1%) Query: 36 PGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95 PG +++D G G +S K G+ VIA+D++P A +E R + + + S L Sbjct: 166 PGDLVVDMFAGVGPFSLLMAKRGARVIAIDKNPCAAKLLKENARMNRLDVEIREGDASSL 225 Query: 96 QDYVPDKGVDGVVFDL 111 + + DK D VV +L Sbjct: 226 TEDLADKA-DHVVMNL 240 >gi|229116314|ref|ZP_04245704.1| Methyltransferase type 11 [Bacillus cereus Rock1-3] gi|228667146|gb|EEL22598.1| Methyltransferase type 11 [Bacillus cereus Rock1-3] Length = 235 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 13/84 (15%) Query: 37 GKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATF--SQ 94 GK ILDA AG Y+ F G+NV A+D P V +E+M + +ATF Sbjct: 45 GKRILDAGCAAGWYTSQFVGRGANVTAIDISPEMVKAVKESMGE--------KATFLCHD 96 Query: 95 LQDYVPDKGVDGVVFDLGVSSMQI 118 LQ+ +P + +D+ VSS+ + Sbjct: 97 LQETLP---FENNTYDIIVSSLTL 117 >gi|229103406|ref|ZP_04234088.1| Methyltransferase type 11 [Bacillus cereus Rock3-28] gi|228679902|gb|EEL34097.1| Methyltransferase type 11 [Bacillus cereus Rock3-28] Length = 235 Score = 41.2 bits (95), Expect = 0.26, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 13/84 (15%) Query: 37 GKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATF--SQ 94 GK ILDA AG Y+ F G+NV A+D P V +E+M + +ATF Sbjct: 45 GKRILDAGCAAGWYTSQFVGRGANVTAIDISPEMVKVVKESMGE--------KATFLCHD 96 Query: 95 LQDYVPDKGVDGVVFDLGVSSMQI 118 LQ+ +P + +D+ VSS+ + Sbjct: 97 LQETLP---FENNTYDIIVSSLTL 117 >gi|328948779|ref|YP_004366116.1| methyltransferase type 11 [Treponema succinifaciens DSM 2489] gi|328449103|gb|AEB14819.1| Methyltransferase type 11 [Treponema succinifaciens DSM 2489] Length = 141 Score = 41.2 bits (95), Expect = 0.26, Method: Compositional matrix adjust. Identities = 21/68 (30%), Positives = 30/68 (44%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H V+ KV LL+P P ILD G G YS + G++V+A D + + Sbjct: 50 HREVVRPKVTELLSPNPADYILDIACGNGNYSSYLAQRGASVVAFDYSKKMIELAKRRQS 109 Query: 80 DYKEQFSL 87 Y +Q Sbjct: 110 QYAKQIEF 117 >gi|242764673|ref|XP_002340822.1| RNA methylase family protein, putative [Talaromyces stipitatus ATCC 10500] gi|218724018|gb|EED23435.1| RNA methylase family protein, putative [Talaromyces stipitatus ATCC 10500] Length = 242 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 5/86 (5%) Query: 29 IALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMRDY--KEQ 84 I+ P V++DA GAGG S +F K G V A+++DP ++C + + Y + + Sbjct: 67 ISTSTPKDKVVLIDAFAGAGGNSIAFAKSGRWKRVYAIEKDPAVLACAKHNAKIYGVQSK 126 Query: 85 FSLFQA-TFSQLQDYVPDKGVDGVVF 109 + F+ F L+ ++ D G VVF Sbjct: 127 ITWFEGDCFEILKTHLKDLGFYSVVF 152 >gi|83416467|gb|ABC18246.1| unknown [Selenomonas ruminantium] gi|83416473|gb|ABC18251.1| unknown [Selenomonas ruminantium] gi|83416479|gb|ABC18256.1| unknown [Selenomonas ruminantium] Length = 184 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 21/68 (30%), Positives = 30/68 (44%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H V+ KV LL+P P ILD G G YS + G++V+A D + + Sbjct: 50 HREVVRPKVTELLSPNPADYILDIACGNGNYSSYLAQRGASVVAFDYSKKMIELAKRRQS 109 Query: 80 DYKEQFSL 87 Y +Q Sbjct: 110 QYAKQIEF 117 >gi|290961780|ref|YP_003492962.1| SAM-dependent methyltransferase [Streptomyces scabiei 87.22] gi|260651306|emb|CBG74428.1| putative SAM-dependent methyltransferase [Streptomyces scabiei 87.22] Length = 403 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 4/78 (5%) Query: 29 IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETM--RDYKEQFS 86 +A L P G ++ D G+G ++ + G+ VIA+D DP A CG+ T+ R + Q Sbjct: 247 LACLGPRVGDLVWDIGSGSGAFATEAARCGAAVIAVDHDPEA--CGRTTLAARRFGVQLQ 304 Query: 87 LFQATFSQLQDYVPDKGV 104 + + + +P+ V Sbjct: 305 VVHGAAPHVLENLPEPDV 322 >gi|255071427|ref|XP_002499387.1| sterol methytransferase [Micromonas sp. RCC299] gi|226514650|gb|ACO60646.1| sterol methytransferase [Micromonas sp. RCC299] Length = 346 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 50/195 (25%), Positives = 78/195 (40%), Gaps = 14/195 (7%) Query: 32 LNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETMR--DYKEQFSLF 88 LN PGK +LD G GG R G++V L+ + F +S G+E R + Sbjct: 94 LNVGPGKKVLDVGCGVGGPLREIAAFTGASVTGLNNNAFQISRGEELNRRTGRHDHCDFI 153 Query: 89 QATFSQLQDYVPDKGVDGVVFDLGVSSMQID---CGDRGFSFQKSGPLDMRMSCSGISAS 145 +A F + VPD D V+ + + D C F K G + Sbjct: 154 KADFMNIP--VPDATYD-AVYQIEATCHAPDAVGCYSEIFRVLKPGGVFASYEWCLTDEY 210 Query: 146 DVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNN 205 D N+ + K IL +G +R H ++ + A F+ T++ + KT S Sbjct: 211 DPQNEEHRKIRQEIL--IGNGLPTARHTHEVLDALKKAGFEVTEEQD--LVKTADVSWYE 266 Query: 206 RIHPATRSFQALRIF 220 I P R+++ R F Sbjct: 267 PIDP-DRAWRPWRDF 280 >gi|315656323|ref|ZP_07909214.1| methyltransferase domain protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315493325|gb|EFU82925.1| methyltransferase domain protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 255 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 21/68 (30%), Positives = 30/68 (44%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H V+ KV LL+P P ILD G G YS + G++V+A D + + Sbjct: 50 HREVVRPKVTELLSPNPADYILDIACGNGNYSSYLAQRGASVVAFDYSKKMIELAKRRQS 109 Query: 80 DYKEQFSL 87 Y +Q Sbjct: 110 QYAKQIEF 117 >gi|269976671|ref|ZP_06183648.1| SAM independent family methyltransferase [Mobiluncus mulieris 28-1] gi|269935145|gb|EEZ91702.1| SAM independent family methyltransferase [Mobiluncus mulieris 28-1] Length = 247 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 21/68 (30%), Positives = 30/68 (44%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H V+ KV LL+P P ILD G G YS + G++V+A D + + Sbjct: 42 HREVVRPKVTELLSPNPADYILDIACGNGNYSSYLAQRGASVVAFDYSKKMIELAKRRQS 101 Query: 80 DYKEQFSL 87 Y +Q Sbjct: 102 QYAKQIEF 109 >gi|237745702|ref|ZP_04576182.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS] gi|229377053|gb|EEO27144.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS] Length = 255 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 21/68 (30%), Positives = 30/68 (44%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H V+ KV LL+P P ILD G G YS + G++V+A D + + Sbjct: 50 HREVVRPKVTELLSPNPADYILDIACGNGNYSSYLAQRGASVVAFDYSKKMIELAKRRQS 109 Query: 80 DYKEQFSL 87 Y +Q Sbjct: 110 QYAKQIEF 117 >gi|168259009|gb|ACA23190.1| SAM independent family methyltransferase [Bifidobacterium thermophilum] Length = 255 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 21/68 (30%), Positives = 30/68 (44%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H V+ KV LL+P P ILD G G YS + G++V+A D + + Sbjct: 50 HREVVRPKVTELLSPNPADYILDIACGNGNYSSYLAQRGASVVAFDYSKKMIELAKRRQS 109 Query: 80 DYKEQFSL 87 Y +Q Sbjct: 110 QYAKQIEF 117 >gi|237748134|ref|ZP_04578614.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13] gi|229379496|gb|EEO29587.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13] Length = 250 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 29/51 (56%) Query: 26 EKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQE 76 E V+ LL+P PG+ ILD G G + KMG V+A+D + AV ++ Sbjct: 25 EPVLKLLDPKPGERILDMGCGLGVLAEEMVKMGCEVVAIDVNSQAVEATRQ 75 >gi|160944450|ref|ZP_02091678.1| hypothetical protein FAEPRAM212_01960 [Faecalibacterium prausnitzii M21/2] gi|225019542|ref|ZP_03708734.1| hypothetical protein CLOSTMETH_03495 [Clostridium methylpentosum DSM 5476] gi|226325675|ref|ZP_03801193.1| hypothetical protein COPCOM_03488 [Coprococcus comes ATCC 27758] gi|261366542|ref|ZP_05979425.1| methyltransferase domain protein [Subdoligranulum variabile DSM 15176] gi|283796490|ref|ZP_06345643.1| methyltransferase domain protein [Clostridium sp. M62/1] gi|290969249|ref|ZP_06560774.1| methyltransferase domain protein [Megasphaera genomosp. type_1 str. 28L] gi|323141251|ref|ZP_08076150.1| methyltransferase domain protein [Phascolarctobacterium sp. YIT 12067] gi|331004537|ref|ZP_08328006.1| hypothetical protein HMPREF0491_02868 [Lachnospiraceae oral taxon 107 str. F0167] gi|82470801|gb|ABB77439.1| unknown [Mitsuokella multacida] gi|82523583|emb|CAJ43595.1| hypothetical protein [Roseburia sp. A2-183] gi|94016157|emb|CAJ97449.1| hypothetical protein [Butyrivibrio fibrisolvens] gi|158444232|gb|EDP21236.1| hypothetical protein FAEPRAM212_01960 [Faecalibacterium prausnitzii M21/2] gi|224947687|gb|EEG28896.1| hypothetical protein CLOSTMETH_03495 [Clostridium methylpentosum DSM 5476] gi|225205799|gb|EEG88153.1| hypothetical protein COPCOM_03488 [Coprococcus comes ATCC 27758] gi|282571357|gb|EFB76892.1| methyltransferase domain protein [Subdoligranulum variabile DSM 15176] gi|290780755|gb|EFD93358.1| methyltransferase domain protein [Megasphaera genomosp. type_1 str. 28L] gi|291075903|gb|EFE13267.1| methyltransferase domain protein [Clostridium sp. M62/1] gi|291530480|emb|CBK96065.1| Methylase involved in ubiquinone/menaquinone biosynthesis [Eubacterium siraeum 70/3] gi|291557364|emb|CBL34481.1| Methylase involved in ubiquinone/menaquinone biosynthesis [Eubacterium siraeum V10Sc8a] gi|295090343|emb|CBK76450.1| Methylase involved in ubiquinone/menaquinone biosynthesis [Clostridium cf. saccharolyticum K10] gi|295100568|emb|CBK98113.1| Methylase involved in ubiquinone/menaquinone biosynthesis [Faecalibacterium prausnitzii L2-6] gi|295115489|emb|CBL36336.1| Methylase involved in ubiquinone/menaquinone biosynthesis [butyrate-producing bacterium SM4/1] gi|322414290|gb|EFY05110.1| methyltransferase domain protein [Phascolarctobacterium sp. YIT 12067] gi|330410645|gb|EGG90069.1| hypothetical protein HMPREF0491_02868 [Lachnospiraceae oral taxon 107 str. F0167] Length = 255 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 21/68 (30%), Positives = 30/68 (44%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H V+ KV LL+P P ILD G G YS + G++V+A D + + Sbjct: 50 HREVVRPKVTELLSPNPADYILDIACGNGNYSSYLAQRGASVVAFDYSKKMIELAKRRQS 109 Query: 80 DYKEQFSL 87 Y +Q Sbjct: 110 QYAKQIEF 117 >gi|158520955|ref|YP_001528825.1| putative RNA methylase [Desulfococcus oleovorans Hxd3] gi|158509781|gb|ABW66748.1| putative RNA methylase [Desulfococcus oleovorans Hxd3] Length = 461 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 14/85 (16%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFA------- 70 G P +++ +I ++ PG +LD G+G MG N I +D PF Sbjct: 115 GKFHPQMIKGLINIMGLKPGDTVLDPMMGSGTVLVEASLMGINSIGIDASPFCRFMAQTK 174 Query: 71 -------VSCGQETMRDYKEQFSLF 88 +S Q+T+ +YKE F+ F Sbjct: 175 IDALTVPLSRAQKTLNNYKEVFNYF 199 >gi|154497882|ref|ZP_02036260.1| hypothetical protein BACCAP_01860 [Bacteroides capillosus ATCC 29799] gi|150272872|gb|EDN00029.1| hypothetical protein BACCAP_01860 [Bacteroides capillosus ATCC 29799] Length = 255 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 21/68 (30%), Positives = 30/68 (44%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H V+ KV LL+P P ILD G G YS + G++V+A D + + Sbjct: 50 HREVVRPKVTELLSPNPADYILDIACGNGNYSSYLAQRGASVVAFDYSKKMIELAKRRQS 109 Query: 80 DYKEQFSL 87 Y +Q Sbjct: 110 QYAKQIEF 117 >gi|145627902|ref|ZP_01783703.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae 22.1-21] gi|144979677|gb|EDJ89336.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae 22.1-21] Length = 82 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 41/84 (48%), Gaps = 10/84 (11%) Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSG-----KVMAVRH-MIPSNAHPAVFQSITKKV 292 L G L ++SFHSLEDR+VK F +S K + +R I N I K Sbjct: 2 LAPEGRLSIISFHSLEDRMVKHFMKKQSKGEDIPKGLPLREDQIQRNQK----LRIIGKA 57 Query: 293 VVPTQEDVAFNRRSRSAKLRAGMR 316 + P+ ++ N RSRSA LR R Sbjct: 58 IQPSDAEIQANPRSRSAILRVAER 81 >gi|82470773|gb|ABB77424.1| unknown protein [Clostridiaceae bacterium K10] Length = 246 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 21/68 (30%), Positives = 30/68 (44%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H V+ KV LL+P P ILD G G YS + G++V+A D + + Sbjct: 50 HREVVRPKVTELLSPNPADYILDIACGNGNYSSYLAQRGASVVAFDYSKKMIELAKRRQS 109 Query: 80 DYKEQFSL 87 Y +Q Sbjct: 110 QYAKQIEF 117 >gi|259486894|tpe|CBF85124.1| TPA: conserved hypothetical protein [Aspergillus nidulans FGSC A4] Length = 279 Score = 40.8 bits (94), Expect = 0.34, Method: Compositional matrix adjust. Identities = 23/88 (26%), Positives = 38/88 (43%) Query: 21 VPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRD 80 VP L + ++ L+P P +LD G G ++ F S V+ +D P + ++ Sbjct: 27 VPKLTQTLLQYLDPQPSDSVLDIGCGDGKFTELFLPYVSKVLGVDSSPAMIEAARKGYGS 86 Query: 81 YKEQFSLFQATFSQLQDYVPDKGVDGVV 108 K +F + F + V D D VV Sbjct: 87 EKAEFQVLDCCFLEQNSDVADGTWDKVV 114 >gi|332652414|ref|ZP_08418159.1| methyltransferase domain protein [Ruminococcaceae bacterium D16] gi|332517560|gb|EGJ47163.1| methyltransferase domain protein [Ruminococcaceae bacterium D16] Length = 243 Score = 40.4 bits (93), Expect = 0.36, Method: Compositional matrix adjust. Identities = 21/68 (30%), Positives = 30/68 (44%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H V+ KV LL+P P ILD G G YS + G++V+A D + + Sbjct: 50 HREVVRPKVTELLSPNPADYILDIACGNGNYSSYLAQRGASVVAFDYSKKMIELAKRRQS 109 Query: 80 DYKEQFSL 87 Y +Q Sbjct: 110 QYAKQIEF 117 >gi|229030481|ref|ZP_04186519.1| Methyltransferase type 11 [Bacillus cereus AH1271] gi|228730825|gb|EEL81767.1| Methyltransferase type 11 [Bacillus cereus AH1271] Length = 238 Score = 40.4 bits (93), Expect = 0.37, Method: Compositional matrix adjust. Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 16/99 (16%) Query: 22 PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81 P ++E + L GK ILDA AG Y+ F + G+NV A+D V +E+M Sbjct: 36 PAMMEMIPKKLE---GKSILDAGCAAGWYTSQFVERGANVTAIDVSSEMVKAAKESMGG- 91 Query: 82 KEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQI 118 +ATF LQ+ +P + FD+ VSS+ + Sbjct: 92 -------KATFLCHDLQEVLP---FEDNTFDIIVSSLTL 120 >gi|307325493|ref|ZP_07604695.1| precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit [Streptomyces violaceusniger Tu 4113] gi|306888962|gb|EFN19946.1| precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit [Streptomyces violaceusniger Tu 4113] Length = 417 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 2/95 (2%) Query: 29 IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLF 88 +A + P PG ++ D G+G + G+ VI +DRDP A R + Q + Sbjct: 263 LARIGPRPGDLVWDIGAGSGAAAVETAGFGAAVITVDRDPDACERTDTLARRFGVQLQVV 322 Query: 89 QATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDR 123 Q ++ + +P+ D V G +S+ C R Sbjct: 323 QGVAPEVLEDLPEP--DAVRIGGGGASVVAACAAR 355 >gi|219848992|ref|YP_002463425.1| methyltransferase type 11 [Chloroflexus aggregans DSM 9485] gi|219543251|gb|ACL24989.1| Methyltransferase type 11 [Chloroflexus aggregans DSM 9485] Length = 241 Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 8/92 (8%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSL 87 +++LL GK +LDA G G YS G+ VIA+D +P V + +++ + + Sbjct: 39 MLSLLPDVRGKRVLDAGCGPGVYSELLLDRGAEVIAIDANPKMVQLAHQRLQNRAQ---V 95 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGVSSMQID 119 QA Q ++P FDL +S + +D Sbjct: 96 LQADLGQPLTFLPTAS-----FDLVISPLVLD 122 >gi|330938026|gb|EGH41806.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv. pisi str. 1704B] Length = 76 Score = 40.4 bits (93), Expect = 0.40, Method: Composition-based stats. Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 3/59 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQ 75 H+ VLLE+ + L LD TFG GG+SR ++G + ++ D+DP A++ GQ Sbjct: 7 HITVLLEEAVEALAVRADGCYLDGTFGRGGHSRLILSQLGPDGRLLGFDKDPQAIATGQ 65 >gi|206971860|ref|ZP_03232809.1| ubiquinone/menaquinone biosynthesis methyltransferase ubie [Bacillus cereus AH1134] gi|228953134|ref|ZP_04115193.1| Methyltransferase type 11 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229070279|ref|ZP_04203529.1| Methyltransferase type 11 [Bacillus cereus F65185] gi|229079990|ref|ZP_04212521.1| Methyltransferase type 11 [Bacillus cereus Rock4-2] gi|229151011|ref|ZP_04279222.1| Methyltransferase type 11 [Bacillus cereus m1550] gi|229179085|ref|ZP_04306442.1| Methyltransferase type 11 [Bacillus cereus 172560W] gi|229190898|ref|ZP_04317889.1| Methyltransferase type 11 [Bacillus cereus ATCC 10876] gi|206733245|gb|EDZ50418.1| ubiquinone/menaquinone biosynthesis methyltransferase ubie [Bacillus cereus AH1134] gi|228592566|gb|EEK50394.1| Methyltransferase type 11 [Bacillus cereus ATCC 10876] gi|228604453|gb|EEK61917.1| Methyltransferase type 11 [Bacillus cereus 172560W] gi|228632571|gb|EEK89189.1| Methyltransferase type 11 [Bacillus cereus m1550] gi|228703369|gb|EEL55824.1| Methyltransferase type 11 [Bacillus cereus Rock4-2] gi|228712843|gb|EEL64768.1| Methyltransferase type 11 [Bacillus cereus F65185] gi|228806549|gb|EEM53109.1| Methyltransferase type 11 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 235 Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust. Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 16/99 (16%) Query: 22 PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81 P ++E + L GK ILDA AG Y+ F G+NV A+D P V +E + + Sbjct: 33 PAMMELIPKELE---GKKILDAGCAAGWYTSQFIGRGANVTAIDVSPEMVKAAKENIGE- 88 Query: 82 KEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQI 118 +ATF LQ+ +P + +D+ VSS+ + Sbjct: 89 -------EATFLCHDLQETLP---FEDNTYDVIVSSLTL 117 >gi|78066871|ref|YP_369640.1| hypothetical protein Bcep18194_A5402 [Burkholderia sp. 383] gi|77967616|gb|ABB08996.1| hypothetical protein Bcep18194_A5402 [Burkholderia sp. 383] Length = 200 Score = 40.4 bits (93), Expect = 0.41, Method: Compositional matrix adjust. Identities = 17/38 (44%), Positives = 23/38 (60%) Query: 36 PGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSC 73 PG +LD G G ++R F G V+ALDRDP A++ Sbjct: 31 PGGAVLDVAAGGGRHARWFASHGHPVVALDRDPTALAA 68 >gi|118595122|ref|ZP_01552469.1| 23S rRNA (uracil-5-)-methyltransferase [Methylophilales bacterium HTCC2181] gi|118440900|gb|EAV47527.1| 23S rRNA (uracil-5-)-methyltransferase [Methylophilales bacterium HTCC2181] Length = 441 Score = 40.4 bits (93), Expect = 0.42, Method: Compositional matrix adjust. Identities = 17/45 (37%), Positives = 25/45 (55%) Query: 23 VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRD 67 VL+ +V+ LNP P +VI D G G ++ GSNV+ + D Sbjct: 277 VLIRRVMNFLNPKPTEVIFDFFCGLGNFTLPIASYGSNVVGFESD 321 >gi|28898142|ref|NP_797747.1| hypothetical protein VP1368 [Vibrio parahaemolyticus RIMD 2210633] gi|153836563|ref|ZP_01989230.1| methyltransferase domain family [Vibrio parahaemolyticus AQ3810] gi|260366443|ref|ZP_05778882.1| methyltransferase family protein [Vibrio parahaemolyticus K5030] gi|260878489|ref|ZP_05890844.1| methyltransferase family protein [Vibrio parahaemolyticus AN-5034] gi|260897070|ref|ZP_05905566.1| methyltransferase family protein [Vibrio parahaemolyticus Peru-466] gi|260901866|ref|ZP_05910261.1| methyltransferase family protein [Vibrio parahaemolyticus AQ4037] gi|28806356|dbj|BAC59631.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi|149750161|gb|EDM60906.1| methyltransferase domain family [Vibrio parahaemolyticus AQ3810] gi|308087784|gb|EFO37479.1| methyltransferase family protein [Vibrio parahaemolyticus Peru-466] gi|308091071|gb|EFO40766.1| methyltransferase family protein [Vibrio parahaemolyticus AN-5034] gi|308108049|gb|EFO45589.1| methyltransferase family protein [Vibrio parahaemolyticus AQ4037] gi|308113173|gb|EFO50713.1| methyltransferase family protein [Vibrio parahaemolyticus K5030] Length = 215 Score = 40.4 bits (93), Expect = 0.42, Method: Compositional matrix adjust. Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 8/100 (8%) Query: 22 PVLLEKVIALLN-PAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRD 80 +L+++ I L P GK +L+ G G + R+F K+G V +D P A+S +E RD Sbjct: 34 AILVQRFIELEGAPTFGK-LLEVGCGEGHHCRAFFKLGFEVTGIDISPTAISWAKEKARD 92 Query: 81 YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDC 120 Q + + A ++ +P+ ++D+ + + C Sbjct: 93 TGIQGAFYVADLTEKTLEIPE------IYDVVIDGNCLHC 126 >gi|319936229|ref|ZP_08010649.1| SAM independent family methyltransferase [Coprobacillus sp. 29_1] gi|319808803|gb|EFW05336.1| SAM independent family methyltransferase [Coprobacillus sp. 29_1] Length = 255 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 20/68 (29%), Positives = 30/68 (44%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H V+ KV LL+P P ILD G G YS + G++++A D + + Sbjct: 50 HREVVRPKVTELLSPNPADYILDIACGNGNYSSYLAQRGASIVAFDYSKKMIELAKRRQS 109 Query: 80 DYKEQFSL 87 Y +Q Sbjct: 110 QYAKQIEF 117 >gi|269929255|ref|YP_003321576.1| methyltransferase type 11 [Sphaerobacter thermophilus DSM 20745] gi|269788612|gb|ACZ40754.1| Methyltransferase type 11 [Sphaerobacter thermophilus DSM 20745] Length = 258 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 30/53 (56%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRD 80 +I LL P PG+ ILD G G +R+ G++V ++DRDP ++ + D Sbjct: 31 LIDLLAPQPGERILDLGCGTGHLTRAIADHGAHVTSIDRDPAMIAHARANYPD 83 >gi|167757784|ref|ZP_02429911.1| hypothetical protein CLOSCI_00115 [Clostridium scindens ATCC 35704] gi|167769822|ref|ZP_02441875.1| hypothetical protein ANACOL_01156 [Anaerotruncus colihominis DSM 17241] gi|317500622|ref|ZP_07958841.1| SAM independent family methyltransferase [Lachnospiraceae bacterium 8_1_57FAA] gi|323487600|ref|ZP_08092890.1| SAM independent family methyltransferase [Clostridium symbiosum WAL-14163] gi|167664666|gb|EDS08796.1| hypothetical protein CLOSCI_00115 [Clostridium scindens ATCC 35704] gi|167668183|gb|EDS12313.1| hypothetical protein ANACOL_01156 [Anaerotruncus colihominis DSM 17241] gi|316897940|gb|EFV19992.1| SAM independent family methyltransferase [Lachnospiraceae bacterium 8_1_57FAA] gi|323399099|gb|EGA91507.1| SAM independent family methyltransferase [Clostridium symbiosum WAL-14163] Length = 255 Score = 40.4 bits (93), Expect = 0.44, Method: Compositional matrix adjust. Identities = 20/68 (29%), Positives = 30/68 (44%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H V+ KV LL+P P ILD G G YS + G++++A D + + Sbjct: 50 HREVVRPKVTELLSPNPADYILDIACGNGNYSSYLAQRGASIVAFDYSKKMIELAKRRQS 109 Query: 80 DYKEQFSL 87 Y +Q Sbjct: 110 QYAKQIEF 117 >gi|323693236|ref|ZP_08107454.1| SAM independent family methyltransferase [Clostridium symbiosum WAL-14673] gi|323502719|gb|EGB18563.1| SAM independent family methyltransferase [Clostridium symbiosum WAL-14673] Length = 240 Score = 40.0 bits (92), Expect = 0.46, Method: Compositional matrix adjust. Identities = 20/68 (29%), Positives = 30/68 (44%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H V+ KV LL+P P ILD G G YS + G++++A D + + Sbjct: 35 HREVVRPKVTELLSPNPADYILDIACGNGNYSSYLAQRGASIVAFDYSKKMIELAKRRQS 94 Query: 80 DYKEQFSL 87 Y +Q Sbjct: 95 QYAKQIEF 102 >gi|228921468|ref|ZP_04084791.1| Methyltransferase type 11 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228838241|gb|EEM83559.1| Methyltransferase type 11 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 235 Score = 40.0 bits (92), Expect = 0.46, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 13/84 (15%) Query: 37 GKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATF--SQ 94 GK ILDA AG Y+ F G+NV A+D P V +E + + +ATF Sbjct: 45 GKKILDAGCAAGWYTSQFIGRGANVTAIDVSPEMVKAAKENIGE--------EATFLCHD 96 Query: 95 LQDYVPDKGVDGVVFDLGVSSMQI 118 LQ+ +P + +D+ VSS+ + Sbjct: 97 LQETLP---FEDNTYDVIVSSLTL 117 >gi|218235557|ref|YP_002367517.1| ubiquinone/menaquinone biosynthesis methyltransferase ubie [Bacillus cereus B4264] gi|218163514|gb|ACK63506.1| ubiquinone/menaquinone biosynthesis methyltransferase ubie [Bacillus cereus B4264] Length = 235 Score = 40.0 bits (92), Expect = 0.46, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 13/84 (15%) Query: 37 GKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATF--SQ 94 GK ILDA AG Y+ F G+NV A+D P V +E + + +ATF Sbjct: 45 GKKILDAGCAAGWYTSQFIGRGANVTAIDVSPEMVKAAKENIGE--------EATFLCHD 96 Query: 95 LQDYVPDKGVDGVVFDLGVSSMQI 118 LQ+ +P + +D+ VSS+ + Sbjct: 97 LQETLP---FEDNTYDVIVSSLTL 117 >gi|225562401|gb|EEH10680.1| S-adenosylmethionine (SAM)-dependent methyltransferase [Ajellomyces capsulatus G186AR] Length = 278 Score = 40.0 bits (92), Expect = 0.48, Method: Compositional matrix adjust. Identities = 26/103 (25%), Positives = 44/103 (42%) Query: 21 VPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRD 80 VP L KV+ LNP P +LD G G ++ SF +V+ +D P +S ++ Sbjct: 26 VPKLAHKVLQYLNPQPTDRVLDVGCGDGKFTSSFIPHIKSVLGVDASPSMISSAKQHYGI 85 Query: 81 YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDR 123 K F + + + + + D VV + + + D R Sbjct: 86 PKADFRVVDCRYLDREQDILNGAWDKVVSNAALHWILKDASTR 128 >gi|206560530|ref|YP_002231295.1| putative methyltransferase [Burkholderia cenocepacia J2315] gi|198036572|emb|CAR52469.1| putative methyltransferase [Burkholderia cenocepacia J2315] Length = 200 Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 5/69 (7%) Query: 9 MSSAIHHTIGDHV----PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIAL 64 MS ++ G HV P A L PA G +LD G G ++R F G V+AL Sbjct: 1 MSESVIAAAGGHVGQAGPSRWVAQWARLVPA-GGAVLDVAAGGGRHARWFASRGHPVVAL 59 Query: 65 DRDPFAVSC 73 DRDP A++ Sbjct: 60 DRDPAALAA 68 >gi|298248160|ref|ZP_06971965.1| Methyltransferase type 11 [Ktedonobacter racemifer DSM 44963] gi|297550819|gb|EFH84685.1| Methyltransferase type 11 [Ktedonobacter racemifer DSM 44963] Length = 300 Score = 40.0 bits (92), Expect = 0.56, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 3/77 (3%) Query: 7 KTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIA 63 T SSA H + L ++++A L PG +LDA G GG +R G V+A Sbjct: 21 HTESSAFLHLFDRFLAPLDKQIVAWLQLTPGSRVLDAGCGGGGMTRLLAGAVGSGGEVVA 80 Query: 64 LDRDPFAVSCGQETMRD 80 LD +P + + ++D Sbjct: 81 LDANPQLIEWNRSHVKD 97 >gi|196041674|ref|ZP_03108965.1| ubiquinone/menaquinone biosynthesis methyltransferase [Bacillus cereus NVH0597-99] gi|196027443|gb|EDX66059.1| ubiquinone/menaquinone biosynthesis methyltransferase [Bacillus cereus NVH0597-99] Length = 236 Score = 40.0 bits (92), Expect = 0.56, Method: Compositional matrix adjust. Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 16/99 (16%) Query: 22 PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81 P ++E + L+ GK ILDA AG Y+ F + G+NV A+D V +E D Sbjct: 34 PAMMEMIPKNLD---GKSILDAGCAAGWYTSQFIERGANVTAIDVSSEMVKAAKERTGD- 89 Query: 82 KEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQI 118 +ATF LQ+ +P + FD+ VSS+ + Sbjct: 90 -------KATFLCHDLQEILP---FEDNTFDVIVSSLTL 118 >gi|238027991|ref|YP_002912222.1| hypothetical protein bglu_1g24400 [Burkholderia glumae BGR1] gi|237877185|gb|ACR29518.1| Hypothetical protein bglu_1g24400 [Burkholderia glumae BGR1] Length = 186 Score = 40.0 bits (92), Expect = 0.57, Method: Compositional matrix adjust. Identities = 18/38 (47%), Positives = 24/38 (63%) Query: 35 APGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVS 72 APG +LD G G ++R F G V+ALDRDP A++ Sbjct: 17 APGGAVLDVAAGQGRHARWFASRGHPVLALDRDPAALA 54 >gi|331084540|ref|ZP_08333640.1| hypothetical protein HMPREF0992_02564 [Lachnospiraceae bacterium 6_1_63FAA] gi|330401090|gb|EGG80684.1| hypothetical protein HMPREF0992_02564 [Lachnospiraceae bacterium 6_1_63FAA] Length = 198 Score = 39.7 bits (91), Expect = 0.60, Method: Compositional matrix adjust. Identities = 21/68 (30%), Positives = 30/68 (44%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H V+ KV LL+P P ILD G G YS + G++V+A D + + Sbjct: 50 HREVVRPKVTELLSPDPSDYILDIACGNGNYSSYLAQRGASVVAFDYSKKMIELAKRRRS 109 Query: 80 DYKEQFSL 87 Y +Q Sbjct: 110 QYAKQIEF 117 >gi|223983685|ref|ZP_03633861.1| hypothetical protein HOLDEFILI_01142 [Holdemania filiformis DSM 12042] gi|225572812|ref|ZP_03781567.1| hypothetical protein RUMHYD_01003 [Blautia hydrogenotrophica DSM 10507] gi|227824269|ref|ZP_03989101.1| conserved hypothetical protein [Acidaminococcus sp. D21] gi|229827136|ref|ZP_04453205.1| hypothetical protein GCWU000182_02521 [Abiotrophia defectiva ATCC 49176] gi|291459465|ref|ZP_06598855.1| methyltransferase domain protein [Oribacterium sp. oral taxon 078 str. F0262] gi|223964382|gb|EEF68718.1| hypothetical protein HOLDEFILI_01142 [Holdemania filiformis DSM 12042] gi|225039869|gb|EEG50115.1| hypothetical protein RUMHYD_01003 [Blautia hydrogenotrophica DSM 10507] gi|226904768|gb|EEH90686.1| conserved hypothetical protein [Acidaminococcus sp. D21] gi|229788754|gb|EEP24868.1| hypothetical protein GCWU000182_02521 [Abiotrophia defectiva ATCC 49176] gi|291417922|gb|EFE91641.1| methyltransferase domain protein [Oribacterium sp. oral taxon 078 str. F0262] Length = 255 Score = 39.7 bits (91), Expect = 0.62, Method: Compositional matrix adjust. Identities = 21/68 (30%), Positives = 30/68 (44%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H V+ KV LL+P P ILD G G YS + G++V+A D + + Sbjct: 50 HREVVRPKVTELLSPDPSDYILDIACGNGNYSSYLAQRGASVVAFDYSKKMIELAKRRRS 109 Query: 80 DYKEQFSL 87 Y +Q Sbjct: 110 QYAKQIEF 117 >gi|228939919|ref|ZP_04102496.1| Methyltransferase type 11 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228972811|ref|ZP_04133409.1| Methyltransferase type 11 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228979393|ref|ZP_04139728.1| Methyltransferase type 11 [Bacillus thuringiensis Bt407] gi|228780327|gb|EEM28559.1| Methyltransferase type 11 [Bacillus thuringiensis Bt407] gi|228786897|gb|EEM34878.1| Methyltransferase type 11 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228819850|gb|EEM65898.1| Methyltransferase type 11 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326940569|gb|AEA16465.1| ubiquinone/menaquinone biosynthesis methyltransferase UBIE [Bacillus thuringiensis serovar chinensis CT-43] Length = 235 Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust. Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 16/99 (16%) Query: 22 PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81 P ++E + L GK ILDA AG Y+ F G+NV A+D P V +E + + Sbjct: 33 PAMMELISKELE---GKKILDAGCAAGWYTSQFIGRGANVTAIDVSPEMVKAAKEYIGE- 88 Query: 82 KEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQI 118 +ATF LQ+ +P + +D+ VSS+ + Sbjct: 89 -------EATFLCHDLQETLP---FEDNTYDVIVSSLTL 117 >gi|218903922|ref|YP_002451756.1| ubiquinone/menaquinone biosynthesis methyltransferase [Bacillus cereus AH820] gi|218537665|gb|ACK90063.1| ubiquinone/menaquinone biosynthesis methyltransferase [Bacillus cereus AH820] Length = 236 Score = 39.7 bits (91), Expect = 0.65, Method: Compositional matrix adjust. Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 16/99 (16%) Query: 22 PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81 P ++E + L+ GK ILDA AG Y+ F + G+NV A+D V +E D Sbjct: 34 PAMMEMIPKNLD---GKSILDAGCAAGWYTSQFIERGANVTAIDVSSEMVKAAKERTGD- 89 Query: 82 KEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQI 118 +ATF LQ+ +P + FD+ VSS+ + Sbjct: 90 -------KATFLCHDLQEILP---FEDNTFDVIVSSLTL 118 >gi|228927849|ref|ZP_04090897.1| Methyltransferase type 11 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228934075|ref|ZP_04096916.1| Methyltransferase type 11 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228946410|ref|ZP_04108731.1| Methyltransferase type 11 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229122346|ref|ZP_04251560.1| Methyltransferase type 11 [Bacillus cereus 95/8201] gi|228661195|gb|EEL16821.1| Methyltransferase type 11 [Bacillus cereus 95/8201] gi|228813273|gb|EEM59573.1| Methyltransferase type 11 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228825589|gb|EEM71381.1| Methyltransferase type 11 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228831912|gb|EEM77501.1| Methyltransferase type 11 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 238 Score = 39.7 bits (91), Expect = 0.69, Method: Compositional matrix adjust. Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 16/99 (16%) Query: 22 PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81 P ++E + L+ GK ILDA AG Y+ F + G+NV A+D V +E D Sbjct: 36 PAMMEMIPKNLD---GKSILDAGCAAGWYTSQFIERGANVTAIDVSSEMVKAAKERTGD- 91 Query: 82 KEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQI 118 +ATF LQ+ +P + FD+ VSS+ + Sbjct: 92 -------KATFLCHDLQEILP---FEDNTFDVIVSSLTL 120 >gi|240281250|gb|EER44753.1| s-adenosylmethionine (SAM)-dependent methyltransferase [Ajellomyces capsulatus H143] gi|325092258|gb|EGC45568.1| s-adenosylmethionine (SAM)-dependent methyltransferase [Ajellomyces capsulatus H88] Length = 288 Score = 39.7 bits (91), Expect = 0.70, Method: Compositional matrix adjust. Identities = 24/91 (26%), Positives = 40/91 (43%) Query: 21 VPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRD 80 VP L KV+ LNP P +LD G G ++ SF +V+ +D P +S ++ Sbjct: 26 VPKLAHKVLQYLNPQPTDRVLDVGCGDGKFTSSFIPHIKSVLGVDASPSMISSAKQHYGI 85 Query: 81 YKEQFSLFQATFSQLQDYVPDKGVDGVVFDL 111 K F + + + + + D V +L Sbjct: 86 PKADFRVVDCRYLDREQDILNGAWDKVSLEL 116 >gi|256371699|ref|YP_003109523.1| tRNA methyltransferase complex GCD14 subunit [Acidimicrobium ferrooxidans DSM 10331] gi|256008283|gb|ACU53850.1| tRNA methyltransferase complex GCD14 subunit [Acidimicrobium ferrooxidans DSM 10331] Length = 296 Score = 39.3 bits (90), Expect = 0.84, Method: Compositional matrix adjust. Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 5/86 (5%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDP-FAVSCGQETMR-DYKEQF 85 ++ L+ APG+ +L+ G+GG + ++G++V+A++R P FA + E+ Sbjct: 89 ILGALDVAPGQRVLECGVGSGGLTVWLARLGASVVAVERRPDFARRAEKNVAHLGGSERV 148 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDL 111 S+ +L D P D VV D+ Sbjct: 149 SII---VGELADVAPPGPYDRVVLDM 171 >gi|52142713|ref|YP_084116.1| ubiquinone/menaquinone biosynthesis methyltransferase [Bacillus cereus E33L] gi|51976182|gb|AAU17732.1| ubiquinone/menaquinone biosynthesis methyltransferase [Bacillus cereus E33L] Length = 238 Score = 39.3 bits (90), Expect = 0.90, Method: Compositional matrix adjust. Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 16/99 (16%) Query: 22 PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81 P ++E + L+ GK ILDA AG Y+ F + G+NV A+D V +E D Sbjct: 36 PAMMEIIPKNLD---GKSILDAGCAAGWYTSQFIERGANVTAIDVSSEMVKAAKERTGD- 91 Query: 82 KEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQI 118 +ATF LQ+ +P + FD+ VSS+ + Sbjct: 92 -------KATFLCHDLQEILP---FEDNTFDVIVSSLTL 120 >gi|323347375|gb|EGA81647.1| Met17p [Saccharomyces cerevisiae Lalvin QA23] Length = 383 Score = 39.3 bits (90), Expect = 0.93, Method: Compositional matrix adjust. Identities = 37/135 (27%), Positives = 60/135 (44%), Gaps = 30/135 (22%) Query: 16 TIGD---HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPF 69 TIG+ +VP EK++A+ + V++D TFGAGGY FC K G++++ + Sbjct: 155 TIGNPKYNVPDF-EKIVAIAHKHGIPVVVDNTFGAGGY---FCQPIKYGADIVTHSATKW 210 Query: 70 -----------AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQI 118 V G+ +DY E+F FSQ P +G G +++ ++ Sbjct: 211 IGGHGTTIGGIIVDSGKFPWKDYPEKF----PQFSQ-----PAEGYHGTIYNEAYGNLAY 261 Query: 119 DCGDRGFSFQKSGPL 133 R + GPL Sbjct: 262 IVHVRTELLRDLGPL 276 >gi|190405358|gb|EDV08625.1| O-acetylhomoserine (thiol)-lyase [Saccharomyces cerevisiae RM11-1a] Length = 444 Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust. Identities = 35/132 (26%), Positives = 58/132 (43%), Gaps = 24/132 (18%) Query: 16 TIGD---HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPF--- 69 TIG+ +VP EK++A+ + V++D TFGAGGY K G++++ + Sbjct: 155 TIGNPKYNVPDF-EKIVAIAHKHGIPVVVDNTFGAGGYFCQPIKYGADIVTHSATKWIGG 213 Query: 70 --------AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCG 121 V G+ +DY E+F FSQ P +G G +++ ++ Sbjct: 214 HGTTIGGIIVDSGKFPWKDYPEKF----PQFSQ-----PAEGYHGTIYNEAYGNLAYIVH 264 Query: 122 DRGFSFQKSGPL 133 R + GPL Sbjct: 265 VRTELLRDLGPL 276 >gi|6323333|ref|NP_013406.1| Met17p [Saccharomyces cerevisiae S288c] gi|127027|sp|P06106|MET17_YEAST RecName: Full=Protein MET17; Includes: RecName: Full=O-acetylhomoserine sulfhydrylase; Short=OAH sulfhydrylase; AltName: Full=Homocysteine synthase; Includes: RecName: Full=O-acetylserine sulfhydrylase; Short=OAS sulfhydrylase gi|4080|emb|CAA28181.1| unnamed protein product [Saccharomyces cerevisiae] gi|596031|gb|AAB67347.1| Met17p: O-acetylhomoserine-O-Acetylserine sulfhydrylase [Saccharomyces cerevisiae] gi|51830472|gb|AAU09765.1| YLR303W [Saccharomyces cerevisiae] gi|151940833|gb|EDN59215.1| O-acetylhomoserine (thiol)-lyase [Saccharomyces cerevisiae YJM789] gi|207342855|gb|EDZ70489.1| YLR303Wp-like protein [Saccharomyces cerevisiae AWRI1631] gi|259148285|emb|CAY81532.1| Met17p [Saccharomyces cerevisiae EC1118] gi|285813716|tpg|DAA09612.1| TPA: Met17p [Saccharomyces cerevisiae S288c] gi|323332388|gb|EGA73797.1| Met17p [Saccharomyces cerevisiae AWRI796] gi|323336355|gb|EGA77623.1| Met17p [Saccharomyces cerevisiae Vin13] gi|323353842|gb|EGA85697.1| Met17p [Saccharomyces cerevisiae VL3] Length = 444 Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust. Identities = 35/132 (26%), Positives = 58/132 (43%), Gaps = 24/132 (18%) Query: 16 TIGD---HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPF--- 69 TIG+ +VP EK++A+ + V++D TFGAGGY K G++++ + Sbjct: 155 TIGNPKYNVPDF-EKIVAIAHKHGIPVVVDNTFGAGGYFCQPIKYGADIVTHSATKWIGG 213 Query: 70 --------AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCG 121 V G+ +DY E+F FSQ P +G G +++ ++ Sbjct: 214 HGTTIGGIIVDSGKFPWKDYPEKF----PQFSQ-----PAEGYHGTIYNEAYGNLAYIVH 264 Query: 122 DRGFSFQKSGPL 133 R + GPL Sbjct: 265 VRTELLRDLGPL 276 >gi|328472842|gb|EGF43690.1| hypothetical protein VP10329_19200 [Vibrio parahaemolyticus 10329] Length = 216 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 7/87 (8%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFS 93 P GK +L+ G G + R+F K+G V +D P A+S +E RD Q + + A + Sbjct: 47 PTFGK-LLEVGCGEGHHCRAFFKLGFEVTGIDISPTAISWAKEKARDTGIQGAFYVADLT 105 Query: 94 QLQDYVPDKGVDGVVFDLGVSSMQIDC 120 + +P+ ++D+ + + C Sbjct: 106 EKTLEIPE------IYDVVIDGNCLHC 126 >gi|332654338|ref|ZP_08420082.1| methyltransferase domain protein [Ruminococcaceae bacterium D16] gi|332517424|gb|EGJ47029.1| methyltransferase domain protein [Ruminococcaceae bacterium D16] Length = 359 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 2/74 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H V+ KV LLNP P ILD G G YS + +V+A D V ++ + Sbjct: 159 HREVVRPKVTELLNPDPTDYILDIACGNGNYSAYLAEKAVSVLAFDYSEKMVELAKKRQK 218 Query: 80 DYKE--QFSLFQAT 91 Y + +F + AT Sbjct: 219 RYADHIEFCVADAT 232 >gi|323303833|gb|EGA57616.1| Met17p [Saccharomyces cerevisiae FostersB] gi|323307951|gb|EGA61208.1| Met17p [Saccharomyces cerevisiae FostersO] Length = 444 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 35/132 (26%), Positives = 58/132 (43%), Gaps = 24/132 (18%) Query: 16 TIGD---HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPF--- 69 TIG+ +VP EK++A+ + V++D TFGAGGY K G++++ + Sbjct: 155 TIGNPKYNVPDF-EKIVAIAHKHGIPVVVDNTFGAGGYFCQPIKYGADIVTHSATKWIGG 213 Query: 70 --------AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCG 121 V G+ +DY E+F FSQ P +G G +++ ++ Sbjct: 214 HGTTIGGIIVDSGKFPWKDYPEKF----PQFSQ-----PAEGYHGTIYNEAYGNLAYIVH 264 Query: 122 DRGFSFQKSGPL 133 R + GPL Sbjct: 265 VRTELLRDLGPL 276 >gi|237746404|ref|ZP_04576884.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS] gi|229377755|gb|EEO27846.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS] Length = 283 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 31/56 (55%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83 V+ LL P G+ ILD GAG ++ K G V+ +D +P AV+ +E D ++ Sbjct: 59 VLELLAPKAGERILDLGCGAGVWAEEMMKRGCEVVGVDINPQAVAAARERGVDARQ 114 >gi|145592777|ref|YP_001157074.1| methyltransferase type 11 [Salinispora tropica CNB-440] gi|145302114|gb|ABP52696.1| Methyltransferase type 11 [Salinispora tropica CNB-440] Length = 266 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 6/87 (6%) Query: 29 IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLF 88 + LL G+ +LD G G Y+ G+ VI LD+ P V +E + +F Sbjct: 67 LRLLGEVAGRTVLDVACGPGLYAEELVARGARVIGLDQSPRMVHLCRERV-----PSGVF 121 Query: 89 QA-TFSQLQDYVPDKGVDGVVFDLGVS 114 ++ ++PD+ VD V+F L + Sbjct: 122 HVHDLAERLHWLPDESVDLVLFALALE 148 >gi|210614221|ref|ZP_03290116.1| hypothetical protein CLONEX_02329 [Clostridium nexile DSM 1787] gi|210150798|gb|EEA81806.1| hypothetical protein CLONEX_02329 [Clostridium nexile DSM 1787] Length = 311 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 2/74 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H V+ KV LLNP P ILD G G YS + +V+A D V ++ + Sbjct: 111 HREVVRPKVTELLNPDPTDYILDIACGNGNYSAYLAEKAVSVLAFDYSEKMVELAKKRQK 170 Query: 80 DYKE--QFSLFQAT 91 Y + +F + AT Sbjct: 171 RYADHIEFCVADAT 184 >gi|229173451|ref|ZP_04300995.1| Methylase [Bacillus cereus MM3] gi|228610145|gb|EEK67423.1| Methylase [Bacillus cereus MM3] Length = 238 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 16/99 (16%) Query: 22 PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81 P ++E + L GK ILDA AG Y+ F + G+NV A+D V +E+ + Sbjct: 36 PAMMEMISKNLE---GKSILDAGCAAGWYTTQFVERGANVTAIDISSEMVKAAKESTGN- 91 Query: 82 KEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQI 118 +ATF LQ+ +P + FD+ VSS+ + Sbjct: 92 -------KATFLCHDLQEVLP---FEDNTFDVIVSSLTL 120 >gi|297155859|gb|ADI05571.1| precorrin-6Y C5,15-methyltransferase [Streptomyces bingchenggensis BCW-1] Length = 417 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 2/102 (1%) Query: 22 PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81 P L +A L P G ++ D G+G + G+ VIA+DRD A R + Sbjct: 256 PQLRATQLARLGPRVGDLVWDIGVGSGAAAVETAGFGAAVIAVDRDRDACERAAALARRF 315 Query: 82 KEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDR 123 Q + T Q+ + +P+ D V G ++ C DR Sbjct: 316 GVQLQVVHGTAPQVLEDLPEP--DVVRVGAGGPAVVAACADR 355 >gi|229060475|ref|ZP_04197838.1| Methyltransferase type 11 [Bacillus cereus AH603] gi|228718858|gb|EEL70479.1| Methyltransferase type 11 [Bacillus cereus AH603] Length = 239 Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust. Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 16/99 (16%) Query: 22 PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81 P ++E + L GK ILDA AG Y+ F G+NV A+D V +E+ D Sbjct: 36 PAMMEIIPKKLE---GKRILDAGCAAGWYTSQFVGRGANVTAIDVSSEMVKAAKESTGD- 91 Query: 82 KEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQI 118 +ATF LQ+ +P + FD+ VSS+ + Sbjct: 92 -------KATFLCHDLQETLP---FEDNAFDMIVSSLTL 120 >gi|251771272|gb|EES51853.1| Methyltransferase type 11 [Leptospirillum ferrodiazotrophum] Length = 214 Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust. Identities = 16/36 (44%), Positives = 24/36 (66%) Query: 32 LNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRD 67 L P PG+++LDA G G +SR F G +V+ LD++ Sbjct: 31 LRPLPGEIVLDAGCGTGWFSRRFNLEGIHVVGLDKN 66 >gi|159108485|ref|XP_001704513.1| Hypothetical protein GL50803_5613 [Giardia lamblia ATCC 50803] gi|157432578|gb|EDO76839.1| hypothetical protein GL50803_5613 [Giardia lamblia ATCC 50803] Length = 258 Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust. Identities = 38/162 (23%), Positives = 64/162 (39%), Gaps = 40/162 (24%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77 D V ++ V+ALL P VI D T GG +R K +A++RDP Sbjct: 45 ADEVARMMRTVLALLGKPPYAVI-DGTACVGGDTRLLAKHFDMTVAIERDP--------- 94 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGVDG----------------VVFDLGVSSMQIDCG 121 T++ LQD + GVD ++ + S+ +D Sbjct: 95 ------------ETYALLQDNLTTWGVDAKTISGDTAALIPQFWTLIGAVATFSLYLDPP 142 Query: 122 DRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGIL 163 G ++ D++++ ++ DVVN+A L+ L +L Sbjct: 143 WGGVDYRSQ--TDIQLTLGSLAVEDVVNRAFEAHLSMKLAVL 182 >gi|296131397|ref|YP_003638647.1| Methyltransferase type 11 [Cellulomonas flavigena DSM 20109] gi|296023212|gb|ADG76448.1| Methyltransferase type 11 [Cellulomonas flavigena DSM 20109] Length = 457 Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 4/62 (6%) Query: 22 PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDP----FAVSCGQET 77 P LE ++A + APG+ +LD G G Y+ + G +V+ LDR P A S G T Sbjct: 30 PATLEPLLAAIAAAPGRDVLDVGGGTGNYAAALADAGYDVLVLDRSPDMLAVAASKGLRT 89 Query: 78 MR 79 R Sbjct: 90 RR 91 >gi|317490258|ref|ZP_07948746.1| dimethyladenosine transferase [Eggerthella sp. 1_3_56FAA] gi|325833365|ref|ZP_08165814.1| putative dimethyladenosine transferase [Eggerthella sp. HGA1] gi|316910752|gb|EFV32373.1| dimethyladenosine transferase [Eggerthella sp. 1_3_56FAA] gi|325485289|gb|EGC87758.1| putative dimethyladenosine transferase [Eggerthella sp. HGA1] Length = 347 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 18/66 (27%), Positives = 37/66 (56%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83 +L+K++AL + AP +L+ G G + + K V++++RDP + ET+ + + Sbjct: 38 ILQKIVALADLAPDDYVLEVGPGIGTLTIALLKSAGRVLSVERDPDLPAVLVETLAPWSD 97 Query: 84 QFSLFQ 89 +F+L Sbjct: 98 RFALLN 103 >gi|269839204|ref|YP_003323896.1| methyltransferase type 11 [Thermobaculum terrenum ATCC BAA-798] gi|269790934|gb|ACZ43074.1| Methyltransferase type 11 [Thermobaculum terrenum ATCC BAA-798] Length = 252 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 7/90 (7%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSL 87 +I LL PAPG+ +LD G G + + G+ V+ +D P V+ + ++ Sbjct: 23 LIELLAPAPGERVLDLGCGTGDLAHRIAQRGAEVVGIDISPEMVAMA-------RSKYPH 75 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGVSSMQ 117 + + +QDY D D V + + M+ Sbjct: 76 IRFEVADVQDYRSDGSFDAVFSNAALHWMR 105 >gi|315505979|ref|YP_004084866.1| methyltransferase type 11 [Micromonospora sp. L5] gi|315412598|gb|ADU10715.1| Methyltransferase type 11 [Micromonospora sp. L5] Length = 258 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 13/94 (13%) Query: 32 LNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91 L PAPG +LD G G + + ++ +V A++ DP ++ + T+ D + +A Sbjct: 36 LEPAPGVRVLDLGAGTGKLTATLAEVSDDVTAVEPDPAMLAELRRTLPDVRALAGSAEAI 95 Query: 92 FSQLQDYVPDKGVDGVV-------FDLGVSSMQI 118 +PD VD VV FD+ V+ +I Sbjct: 96 ------PLPDSSVDAVVAGNAMHWFDMAVAGPEI 123 >gi|283853586|ref|ZP_06370823.1| ribosomal L11 methyltransferase [Desulfovibrio sp. FW1012B] gi|283571011|gb|EFC19034.1| ribosomal L11 methyltransferase [Desulfovibrio sp. FW1012B] Length = 286 Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust. Identities = 18/44 (40%), Positives = 22/44 (50%) Query: 36 PGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 PG LD G+G CK+G + LD DP AV C E +R Sbjct: 151 PGNRFLDLGTGSGILGIGLCKLGLTGVGLDIDPQAVWCAAENLR 194 >gi|302867621|ref|YP_003836258.1| methyltransferase [Micromonospora aurantiaca ATCC 27029] gi|302570480|gb|ADL46682.1| Methyltransferase type 11 [Micromonospora aurantiaca ATCC 27029] Length = 258 Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust. Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 13/94 (13%) Query: 32 LNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91 L PAPG +LD G G + + ++ +V A++ DP ++ + T+ D + +A Sbjct: 36 LEPAPGVRVLDLGAGTGKLTATLAEVSDDVTAVEPDPAMLAELRRTLPDVRALAGSAEAI 95 Query: 92 FSQLQDYVPDKGVDGVV-------FDLGVSSMQI 118 +PD VD VV FD+ V+ +I Sbjct: 96 ------PLPDSSVDAVVAGNAMHWFDMAVAGPEI 123 >gi|85058883|ref|YP_454585.1| biotin synthesis protein BioC [Sodalis glossinidius str. 'morsitans'] gi|84779403|dbj|BAE74180.1| biotin synthesis protein BioC [Sodalis glossinidius str. 'morsitans'] Length = 259 Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust. Identities = 17/40 (42%), Positives = 25/40 (62%) Query: 26 EKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALD 65 +++ AL P G+ ILDA G G +SR + G+ V+ALD Sbjct: 40 DRLCALTGPVEGRRILDAGCGTGWFSRRWQAQGNQVVALD 79 >gi|289620473|emb|CBI53046.1| unnamed protein product [Sordaria macrospora] Length = 466 Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust. Identities = 27/108 (25%), Positives = 55/108 (50%), Gaps = 4/108 (3%) Query: 92 FSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQA 151 F+ ++D + +++ L ++ + GDR F Q GP ++ MS G+ SDV+ + Sbjct: 278 FANMRDTKVYTTLARILYSLRTATRRTIWGDRLF-LQFRGPTNILMSSRGVRVSDVLTRD 336 Query: 152 NVKDLTRI-LGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198 ++ ++ G++G+ SRI A K+ A + ++L L+ +T Sbjct: 337 DINEIADTEAGVVGKALGTSRIEKA--KKEAKALEEKKKELKPLVSET 382 >gi|212529036|ref|XP_002144675.1| RNA methylase family protein, putative [Penicillium marneffei ATCC 18224] gi|210074073|gb|EEA28160.1| RNA methylase family protein, putative [Penicillium marneffei ATCC 18224] Length = 242 Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust. Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 5/76 (6%) Query: 39 VILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMRDY--KEQFSLFQA-TFS 93 V++DA GAGG S +F K G V A++++P ++C + + Y + + + F+ F Sbjct: 77 VLIDAFAGAGGNSIAFAKSGRWKRVYAIEKNPAVLTCAKHNAKIYGVESKITWFEGDCFE 136 Query: 94 QLQDYVPDKGVDGVVF 109 L+ ++ D G VVF Sbjct: 137 ILKTHLKDLGPYSVVF 152 >gi|159035910|ref|YP_001535163.1| methyltransferase type 11 [Salinispora arenicola CNS-205] gi|157914745|gb|ABV96172.1| Methyltransferase type 11 [Salinispora arenicola CNS-205] Length = 259 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 6/87 (6%) Query: 29 IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVS-CGQETMRDYKEQFSL 87 + LL G+ +LD G G Y+ G+ VI LD+ P V C Q R +F + Sbjct: 60 LRLLGEVAGRTVLDVACGPGLYAEELVGRGARVIGLDQSPRMVQLCRQ---RVPSGEFRV 116 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGVS 114 + ++PD VD V+F LG+ Sbjct: 117 HD--LADRLHWLPDDSVDLVLFALGLE 141 >gi|327259278|ref|XP_003214465.1| PREDICTED: tyrosine-protein phosphatase non-receptor type 21-like [Anolis carolinensis] Length = 1174 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 12/112 (10%) Query: 187 TTQDLSSLIQKTVYFSKNN------RIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL- 239 +T DLS + +Y S +N R+H + ++FQ + V + ++E+++ L SA A Sbjct: 565 STPDLS----RHLYISSSNPDLITRRVHHSVQTFQEDSLPVAHSLQEVSEPLTSARHAQL 620 Query: 240 -KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK 290 K + I HS E +K+ S S +A+ ++P+ + P VF TK Sbjct: 621 QKRNSIEIAGLAHSFEAMRMKERTMSASAADVALTRVVPAGSQPTVFLERTK 672 >gi|317401458|gb|EFV82090.1| hypothetical protein HMPREF0005_00929 [Achromobacter xylosoxidans C54] Length = 295 Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 4/77 (5%) Query: 37 GKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ 96 GK ILDA G G ++ +F ++G+NV+A+D+ G + +R E+F F+ L Sbjct: 101 GKSILDAGCGNGRWAYAFSRLGANVMAVDQS----EHGLQNVRRLCEEFPGFRHQAVNLL 156 Query: 97 DYVPDKGVDGVVFDLGV 113 + +P +V+ GV Sbjct: 157 EPLPFDDQFDLVWSYGV 173 >gi|253687896|ref|YP_003017086.1| biotin biosynthesis protein BioC [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251754474|gb|ACT12550.1| biotin biosynthesis protein BioC [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 253 Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust. Identities = 17/40 (42%), Positives = 26/40 (65%) Query: 26 EKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALD 65 E+++ L+ P G ++LDA G G +SR + + G VIALD Sbjct: 34 ERLLTLMPPHGGLLVLDAGCGTGHFSRHWRQRGKTVIALD 73 >gi|332193122|gb|AEE31243.1| S-adenosyl-L-methionine-dependent methyltransferase domain-containing protein [Arabidopsis thaliana] Length = 221 Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust. Identities = 17/45 (37%), Positives = 26/45 (57%) Query: 37 GKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81 GKV++D G GG + F K+ S+VIA+D DP ++ + Y Sbjct: 62 GKVVIDCFSGVGGNTIQFAKVCSSVIAIDIDPMKIALAMNNAKVY 106 >gi|238478691|ref|NP_001154386.1| unknown protein [Arabidopsis thaliana] Length = 239 Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust. Identities = 17/45 (37%), Positives = 26/45 (57%) Query: 37 GKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81 GKV++D G GG + F K+ S+VIA+D DP ++ + Y Sbjct: 80 GKVVIDCFSGVGGNTIQFAKVCSSVIAIDIDPMKIALAMNNAKVY 124 >gi|295672598|ref|XP_002796845.1| methyltransferase [Paracoccidioides brasiliensis Pb01] gi|226282217|gb|EEH37783.1| methyltransferase [Paracoccidioides brasiliensis Pb01] Length = 318 Score = 37.7 bits (86), Expect = 2.2, Method: Compositional matrix adjust. Identities = 25/118 (21%), Positives = 49/118 (41%) Query: 11 SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFA 70 S ++T VP L EKV+ L+P P +LD G G ++ ++ V+ +D P Sbjct: 31 SEAYNTSAAFVPKLAEKVLQYLDPQPADHVLDVGCGDGKFTGNYISDVGMVLGIDASPSM 90 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + ++ + +F + T + + D V+ + + + D R F + Sbjct: 91 IGSAKQDYGSSRAEFRVVDCTHLDREPAIVSGTWDKVISNAALHWILRDSSTRMFVLE 148 >gi|313224857|emb|CBY20649.1| unnamed protein product [Oikopleura dioica] Length = 1437 Score = 37.7 bits (86), Expect = 2.3, Method: Compositional matrix adjust. Identities = 24/48 (50%), Positives = 30/48 (62%), Gaps = 1/48 (2%) Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEEL-AQGLRSA 235 Q L L QK V F++ N PATR F+ L + VN I+EL A GLR+A Sbjct: 1387 QVLGELQQKIVQFTQLNPRDPATRGFKMLNMSVNGIIKELGATGLRNA 1434 >gi|67522218|ref|XP_659170.1| hypothetical protein AN1566.2 [Aspergillus nidulans FGSC A4] gi|40745117|gb|EAA64273.1| hypothetical protein AN1566.2 [Aspergillus nidulans FGSC A4] Length = 121 Score = 37.7 bits (86), Expect = 2.3, Method: Compositional matrix adjust. Identities = 22/88 (25%), Positives = 38/88 (43%) Query: 21 VPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRD 80 VP L + ++ L+P P +LD G G ++ F S V+ +D P + ++ Sbjct: 27 VPKLTQTLLQYLDPQPSDSVLDIGCGDGKFTELFLPYVSKVLGVDSSPAMIEAARKGYGS 86 Query: 81 YKEQFSLFQATFSQLQDYVPDKGVDGVV 108 K +F + F + V D D V+ Sbjct: 87 EKAEFQVLDCCFLEQNSDVADGTWDKVL 114 >gi|186684991|ref|YP_001868187.1| N-6 DNA methylase [Nostoc punctiforme PCC 73102] gi|186467443|gb|ACC83244.1| N-6 DNA methylase [Nostoc punctiforme PCC 73102] Length = 489 Score = 37.7 bits (86), Expect = 2.4, Method: Compositional matrix adjust. Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 4/64 (6%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83 L++ ++AL+ P PG++I D G GG F G I DPF + Q++ + Y+ Sbjct: 152 LIDCMVALIKPQPGELIQDPAAGTGG----FLIAGDRYIRQYHDPFEWTEAQQSFQQYQA 207 Query: 84 QFSL 87 + + Sbjct: 208 FYGM 211 >gi|222481034|ref|YP_002567271.1| putative RNA methylase [Halorubrum lacusprofundi ATCC 49239] gi|222453936|gb|ACM58201.1| putative RNA methylase [Halorubrum lacusprofundi ATCC 49239] Length = 356 Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 10/88 (11%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY--------K 82 L APG+ +LD G GG +GS+VIA D V +E +R+Y Sbjct: 198 LAGAAPGRTLLDPMCGTGGLPLEAGIVGSDVIACDAQTKMVRGTRENLREYLNTALDDSG 257 Query: 83 EQFSLFQATFSQLQDYVPDKGVDGVVFD 110 + + + + L + D VDGV FD Sbjct: 258 PDWHVARGDATALP--LRDDAVDGVAFD 283 >gi|313212703|emb|CBY36640.1| unnamed protein product [Oikopleura dioica] Length = 266 Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust. Identities = 24/48 (50%), Positives = 30/48 (62%), Gaps = 1/48 (2%) Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEEL-AQGLRSA 235 Q L L QK V F++ N PATR F+ L + VN I+EL A GLR+A Sbjct: 216 QVLGELQQKIVQFTQLNPRDPATRGFKMLNMSVNGIIKELGATGLRNA 263 >gi|255620758|ref|XP_002540147.1| conserved hypothetical protein [Ricinus communis] gi|223498816|gb|EEF22236.1| conserved hypothetical protein [Ricinus communis] Length = 217 Score = 37.7 bits (86), Expect = 2.9, Method: Compositional matrix adjust. Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 4/87 (4%) Query: 7 KTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDR 66 + S++++ + V L + + LLNP PG+ ILD G G + G+ +I +D Sbjct: 14 QQWSTSLYESNARFVGDLAARAVELLNPQPGERILDIGCGDGYLTEKIAATGAVMIGVDY 73 Query: 67 DPFAVSCGQETMRDYK----EQFSLFQ 89 P V+ + D + E+ FQ Sbjct: 74 SPELVATARARNLDVRVGNAEELDFFQ 100 >gi|118468434|ref|YP_887597.1| methyltransferase [Mycobacterium smegmatis str. MC2 155] gi|118169721|gb|ABK70617.1| methyltransferase [Mycobacterium smegmatis str. MC2 155] Length = 243 Score = 37.7 bits (86), Expect = 2.9, Method: Compositional matrix adjust. Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 8/88 (9%) Query: 29 IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR--DYKEQFS 86 +AL+ G+ ILDA G G Y+ K G+++I D+ P V + + D++ Sbjct: 37 LALIGDVAGRTILDAACGPGLYAEELAKRGASLIGFDQSPRMVELARARVPSGDFRVH-- 94 Query: 87 LFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + D++P + VD V+ L + Sbjct: 95 ----DLAGPLDWLPSQSVDAVLLALALE 118 >gi|317153229|ref|YP_004121277.1| ribosomal L11 methyltransferase [Desulfovibrio aespoeensis Aspo-2] gi|316943480|gb|ADU62531.1| ribosomal L11 methyltransferase [Desulfovibrio aespoeensis Aspo-2] Length = 291 Score = 37.4 bits (85), Expect = 2.9, Method: Compositional matrix adjust. Identities = 17/41 (41%), Positives = 22/41 (53%) Query: 36 PGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQE 76 PG+ LD G+G CK+G I LD DP A+ C +E Sbjct: 147 PGQSFLDLGTGSGILGIGLCKLGLTGIGLDIDPQAIECARE 187 >gi|255020470|ref|ZP_05292535.1| 23S rRNA (uracil-5-) -methyltransferase rumA [Acidithiobacillus caldus ATCC 51756] gi|254970080|gb|EET27577.1| 23S rRNA (uracil-5-) -methyltransferase rumA [Acidithiobacillus caldus ATCC 51756] Length = 440 Score = 37.4 bits (85), Expect = 2.9, Method: Compositional matrix adjust. Identities = 15/46 (32%), Positives = 28/46 (60%) Query: 22 PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRD 67 PVL+ + +ALL P PG+ I+D G G ++ ++G+ + ++ D Sbjct: 280 PVLVRRAMALLAPEPGEEIVDLFCGLGNFTLPMARLGARALGVEGD 325 >gi|15835248|ref|NP_297007.1| dimethyladenosine transferase [Chlamydia muridarum Nigg] gi|270285420|ref|ZP_06194814.1| dimethyladenosine transferase [Chlamydia muridarum Nigg] gi|270289434|ref|ZP_06195736.1| dimethyladenosine transferase [Chlamydia muridarum Weiss] gi|301336817|ref|ZP_07225019.1| dimethyladenosine transferase [Chlamydia muridarum MopnTet14] gi|27151610|sp|Q9PK40|RSMA_CHLMU RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|7190672|gb|AAF39462.1| dimethyladenosine transferase [Chlamydia muridarum Nigg] Length = 277 Score = 37.4 bits (85), Expect = 3.0, Method: Compositional matrix adjust. Identities = 17/45 (37%), Positives = 26/45 (57%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDP 68 +L K++A + PG +L+ G G S G+NVIAL++DP Sbjct: 34 ILRKILATADVQPGDWVLEIGPGFGALSEVLVSQGANVIALEKDP 78 >gi|303316107|ref|XP_003068058.1| hypothetical protein CPC735_043570 [Coccidioides posadasii C735 delta SOWgp] gi|240107734|gb|EER25913.1| hypothetical protein CPC735_043570 [Coccidioides posadasii C735 delta SOWgp] gi|320032424|gb|EFW14377.1| conserved hypothetical protein [Coccidioides posadasii str. Silveira] Length = 283 Score = 37.4 bits (85), Expect = 3.0, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 31/57 (54%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALD 65 S+ +HT VP+L +KV+A ++P +LD G G ++ + S+V+ LD Sbjct: 15 WSAEAYHTSASFVPLLTQKVLAYIDPHSTDQVLDIGCGDGKFTAKYMDRVSHVLGLD 71 >gi|220905791|ref|YP_002481102.1| ribosomal L11 methyltransferase [Cyanothece sp. PCC 7425] gi|219862402|gb|ACL42741.1| ribosomal L11 methyltransferase [Cyanothece sp. PCC 7425] Length = 336 Score = 37.4 bits (85), Expect = 3.2, Method: Compositional matrix adjust. Identities = 17/40 (42%), Positives = 23/40 (57%) Query: 36 PGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQ 75 PG LD G+G S + ++G+ V+ALD DP AV Q Sbjct: 166 PGMTALDLGCGSGILSVAMARLGATVLALDNDPLAVQATQ 205 >gi|222831815|gb|EEE70292.1| predicted protein [Populus trichocarpa] Length = 81 Score = 37.4 bits (85), Expect = 3.6, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 3/56 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMG--SNVIALDRDPFAVS 72 H VLL++ + L P +D TFG GG+SR+ ++G ++A D+DP A++ Sbjct: 14 HRTVLLDEAVDALVWRPDGAYVDGTFGRGGHSRAVLARLGPAGTLVAFDKDPAAIA 69 >gi|115401608|ref|XP_001216392.1| conserved hypothetical protein [Aspergillus terreus NIH2624] gi|114190333|gb|EAU32033.1| conserved hypothetical protein [Aspergillus terreus NIH2624] Length = 281 Score = 37.4 bits (85), Expect = 3.8, Method: Compositional matrix adjust. Identities = 25/106 (23%), Positives = 43/106 (40%) Query: 3 SKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI 62 S+S SS + T VP L + V+ L+P P +LD G G ++ +F V+ Sbjct: 2 SQSKDHWSSEAYATSASFVPKLTQTVLRYLDPKPTDRVLDVGCGDGKFTEAFIPAVEYVL 61 Query: 63 ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVV 108 +D P + + K F + + + V + D V+ Sbjct: 62 GVDSSPAMIESANKDYAGPKAAFRVLDCCYLEQDPSVVNGQWDKVI 107 >gi|332288379|ref|YP_004419231.1| 3-demethylubiquinone-9 3-methyltransferase [Gallibacterium anatis UMN179] gi|330431275|gb|AEC16334.1| 3-demethylubiquinone-9 3-methyltransferase [Gallibacterium anatis UMN179] Length = 247 Score = 37.0 bits (84), Expect = 4.0, Method: Compositional matrix adjust. Identities = 27/100 (27%), Positives = 41/100 (41%), Gaps = 20/100 (20%) Query: 22 PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDP------------- 68 P+ L ++ N GK +LD G G S S K G+NV +D P Sbjct: 41 PLRLNYILQHSNGLNGKKVLDVGCGGGILSESMAKSGANVTGIDMSPQPLAVAKQHAQDN 100 Query: 69 -FAVSCGQETMRDYKEQFSLFQA------TFSQLQDYVPD 101 + Q T+ D+ +Q QA T ++ ++VPD Sbjct: 101 NLIIDYQQSTIEDFLQQHQQLQAEKFDVITCMEMLEHVPD 140 >gi|119177221|ref|XP_001240414.1| hypothetical protein CIMG_07577 [Coccidioides immitis RS] Length = 291 Score = 37.0 bits (84), Expect = 4.1, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 31/57 (54%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALD 65 S+ +HT VP+L +KV+A ++P +LD G G ++ + S+V+ LD Sbjct: 15 WSAEAYHTSASFVPLLTQKVLAYIDPHSTDQVLDIGCGDGKFTAKYMDRVSHVLGLD 71 >gi|308177784|ref|YP_003917190.1| RNA methyltransferase [Arthrobacter arilaitensis Re117] gi|307745247|emb|CBT76219.1| putative RNA methyltransferase [Arthrobacter arilaitensis Re117] Length = 440 Score = 37.0 bits (84), Expect = 4.3, Method: Compositional matrix adjust. Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 3/91 (3%) Query: 23 VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMR 79 +L +VI L PA G+ I D GAG +S K G V +++ P + ++ +R Sbjct: 280 LLSSRVIELTEPAAGEQIADLYAGAGLFSVPLAKAVGTGGRVFSIEGAPGTHADAKKNLR 339 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFD 110 DY + + L+ D +D VV D Sbjct: 340 DYSQATVIRGRVERVLRQVAHDATLDAVVLD 370 >gi|75859106|ref|XP_868893.1| hypothetical protein AN9511.2 [Aspergillus nidulans FGSC A4] gi|40747596|gb|EAA66752.1| hypothetical protein AN9511.2 [Aspergillus nidulans FGSC A4] Length = 187 Score = 37.0 bits (84), Expect = 4.4, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 9/81 (11%) Query: 29 IALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMRDY--KEQ 84 +A +P K+++D GAGG + +F + G V A+++DP + C Q Y ++ Sbjct: 83 VAHASPPERKILVDVFAGAGGNTIAFARSGHWKRVYAIEKDPATLRCAQHNAEVYGVADK 142 Query: 85 FSLFQATF-----SQLQDYVP 100 + FQ SQL+D P Sbjct: 143 ITWFQGDCFDILKSQLKDLAP 163 >gi|23016143|ref|ZP_00055902.1| COG0863: DNA modification methylase [Magnetospirillum magnetotacticum MS-1] Length = 358 Score = 37.0 bits (84), Expect = 4.6, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQE 76 LL +VI + + PG V+LD FG G K+G N I +RDP ++ +E Sbjct: 195 LLYRVI-MASTKPGDVVLDPFFGTGTTGAVAKKLGRNFIGCERDPDYIAAAKE 246 >gi|295676911|ref|YP_003605435.1| hypothetical protein BC1002_1861 [Burkholderia sp. CCGE1002] gi|295436754|gb|ADG15924.1| conserved hypothetical protein [Burkholderia sp. CCGE1002] Length = 200 Score = 36.6 bits (83), Expect = 5.2, Method: Compositional matrix adjust. Identities = 16/33 (48%), Positives = 21/33 (63%) Query: 35 APGKVILDATFGAGGYSRSFCKMGSNVIALDRD 67 APG +LD GAG ++R F +G V A+DRD Sbjct: 27 APGGAVLDVASGAGRHARFFASLGHPVTAIDRD 59 >gi|292654335|ref|YP_003534232.1| N2-methylguanosine tRNA methyltransferase [Haloferax volcanii DS2] gi|291370624|gb|ADE02851.1| N2-methylguanosine tRNA methyltransferase [Haloferax volcanii DS2] Length = 321 Score = 36.6 bits (83), Expect = 5.3, Method: Compositional matrix adjust. Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 2/93 (2%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77 G PV + + PG ILD G GG +G++V+ +D V +E Sbjct: 159 GSMAPVDARAFVNMAGAEPGARILDPMCGTGGVLLEAGLVGADVVGVDAQAKMVGGAREN 218 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFD 110 +R Y + + + L + D +DG VFD Sbjct: 219 LRHYVGSGDVVRGDATALP--LRDDSMDGAVFD 249 >gi|21243111|ref|NP_642693.1| 3-demethylubiquinone-9 3-methyltransferase [Xanthomonas axonopodis pv. citri str. 306] gi|24418725|sp|Q8PK00|UBIG_XANAC RecName: Full=3-demethylubiquinone-9 3-methyltransferase; AltName: Full=3,4-dihydroxy-5-hexaprenylbenzoate methyltransferase; Short=DHHB methyltransferase gi|21108628|gb|AAM37229.1| 3-demethylubiquinone-9 3-methyltransferase [Xanthomonas axonopodis pv. citri str. 306] Length = 239 Score = 36.6 bits (83), Expect = 5.6, Method: Compositional matrix adjust. Identities = 33/96 (34%), Positives = 43/96 (44%), Gaps = 17/96 (17%) Query: 22 PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAV------SCGQ 75 PV LE V A L PA G +LD G G S S ++G+ V A+D P V S Sbjct: 42 PVRLEYVSARLEPA-GARVLDVGCGGGLLSESMARLGAQVTAIDLAPELVKVARLHSLES 100 Query: 76 ETMRDYK---------EQFSLFQA-TFSQLQDYVPD 101 DY+ EQ F A T ++ ++VPD Sbjct: 101 GVQVDYRVQSVEDLAAEQAGSFDAVTCMEMLEHVPD 136 >gi|196009009|ref|XP_002114370.1| hypothetical protein TRIADDRAFT_58107 [Trichoplax adhaerens] gi|190583389|gb|EDV23460.1| hypothetical protein TRIADDRAFT_58107 [Trichoplax adhaerens] Length = 725 Score = 36.6 bits (83), Expect = 6.0, Method: Compositional matrix adjust. Identities = 16/44 (36%), Positives = 23/44 (52%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82 +I+DA G GG F K +VIA+D DP + C + + Y Sbjct: 564 IIIDAFCGVGGNCIQFAKTCDHVIAIDIDPNKIKCARHNAKIYN 607 >gi|17508967|ref|NP_492400.1| hypothetical protein T08G11.4 [Caenorhabditis elegans] gi|5824602|emb|CAB02307.2| C. elegans protein T08G11.4a, confirmed by transcript evidence [Caenorhabditis elegans] Length = 566 Score = 36.6 bits (83), Expect = 6.1, Method: Compositional matrix adjust. Identities = 17/40 (42%), Positives = 23/40 (57%) Query: 42 DATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81 DA G GG + F G++VIA+D DP + C +E R Y Sbjct: 396 DAFTGVGGNAIQFALRGAHVIAIDMDPVRLKCARENARVY 435 >gi|193203170|ref|NP_001122517.1| hypothetical protein T08G11.4 [Caenorhabditis elegans] gi|159572236|emb|CAP19342.1| C. elegans protein T08G11.4b, confirmed by transcript evidence [Caenorhabditis elegans] Length = 495 Score = 36.6 bits (83), Expect = 6.2, Method: Compositional matrix adjust. Identities = 17/40 (42%), Positives = 23/40 (57%) Query: 42 DATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81 DA G GG + F G++VIA+D DP + C +E R Y Sbjct: 325 DAFTGVGGNAIQFALRGAHVIAIDMDPVRLKCARENARVY 364 >gi|126657899|ref|ZP_01729052.1| hypothetical protein CY0110_13581 [Cyanothece sp. CCY0110] gi|126620839|gb|EAZ91555.1| hypothetical protein CY0110_13581 [Cyanothece sp. CCY0110] Length = 250 Score = 36.6 bits (83), Expect = 6.5, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 24/49 (48%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQE 76 V++LLNP P + ILD G G + + VI +D P V QE Sbjct: 25 VLSLLNPQPDESILDLGCGNGTLTEKIASVAREVIGIDSSPSMVQATQE 73 >gi|308500069|ref|XP_003112220.1| hypothetical protein CRE_29769 [Caenorhabditis remanei] gi|308268701|gb|EFP12654.1| hypothetical protein CRE_29769 [Caenorhabditis remanei] Length = 571 Score = 36.2 bits (82), Expect = 6.5, Method: Compositional matrix adjust. Identities = 17/40 (42%), Positives = 23/40 (57%) Query: 42 DATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81 DA G GG + F G++VIA+D DP + C +E R Y Sbjct: 399 DAFTGVGGNAIQFALRGAHVIAIDMDPVRLKCARENARVY 438 >gi|330905924|ref|XP_003295285.1| hypothetical protein PTT_00269 [Pyrenophora teres f. teres 0-1] gi|311333539|gb|EFQ96620.1| hypothetical protein PTT_00269 [Pyrenophora teres f. teres 0-1] Length = 305 Score = 36.2 bits (82), Expect = 6.6, Method: Compositional matrix adjust. Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 3/84 (3%) Query: 26 EKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY--KE 83 +K+ L PG +LDA G+G + + + G NV A+D P V+ ++ + Y ++ Sbjct: 88 DKLYTRLGLKPGDRVLDAGAGSGYVAMTMARHGLNVQAIDITPHHVADAKKNVVKYGLQD 147 Query: 84 QFSLFQATFSQLQDYVPDKGVDGV 107 + + A + L + PD+ DG+ Sbjct: 148 RIKVDYANYHDLSQF-PDESFDGI 170 >gi|268566247|ref|XP_002639672.1| Hypothetical protein CBG12390 [Caenorhabditis briggsae] gi|187029521|emb|CAP31376.1| hypothetical protein CBG_12390 [Caenorhabditis briggsae AF16] Length = 573 Score = 36.2 bits (82), Expect = 6.8, Method: Compositional matrix adjust. Identities = 43/173 (24%), Positives = 69/173 (39%), Gaps = 26/173 (15%) Query: 42 DATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR-----DYKE----QFSLFQATF 92 DA G GG + F G++VIA+D DP + C +E R DY + F AT+ Sbjct: 404 DAFTGVGGNAIQFALRGAHVIAIDMDPVRLKCARENARVYGVADYIDFICADFFDVSATW 463 Query: 93 SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC--SGISASDVVNQ 150 + + P VD V G S+ K+ D+ C +G+ DV Sbjct: 464 AADKKLAP--KVDAVFLSPPWG---------GPSYLKAKEFDLATGCCPNGVDIFDV--- 509 Query: 151 ANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSK 203 ++K I L + S++ +K + + + S + TVY+ K Sbjct: 510 -SLKISPNIAYFLPRNTKVSQLTELAIKAKSRMEIEQSSLNSKIKTITVYYGK 561 >gi|220910008|ref|YP_002485319.1| type 11 methyltransferase [Cyanothece sp. PCC 7425] gi|219866619|gb|ACL46958.1| Methyltransferase type 11 [Cyanothece sp. PCC 7425] Length = 254 Score = 36.2 bits (82), Expect = 7.0, Method: Compositional matrix adjust. Identities = 16/51 (31%), Positives = 28/51 (54%) Query: 26 EKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQE 76 E ++ LL+P G+ ILD G G + G++V+ +D DP ++ Q+ Sbjct: 23 ESLLQLLDPQSGEDILDLGCGTGHLTAKIASSGASVLGIDADPAMIAAAQQ 73 >gi|209964251|ref|YP_002297166.1| SAM-dependent methyltransferase, putative [Rhodospirillum centenum SW] gi|209957717|gb|ACI98353.1| SAM-dependent methyltransferase, putative [Rhodospirillum centenum SW] Length = 257 Score = 36.2 bits (82), Expect = 7.2, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 25/48 (52%) Query: 21 VPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDP 68 V L V+ LL+P PG+ ILD G G + G +V+A D DP Sbjct: 25 VAALGRPVLDLLDPCPGERILDLGCGDGALTAELAARGVDVVAADADP 72 >gi|152978309|ref|YP_001343938.1| methyltransferase type 11 [Actinobacillus succinogenes 130Z] gi|150840032|gb|ABR74003.1| Methyltransferase type 11 [Actinobacillus succinogenes 130Z] Length = 257 Score = 36.2 bits (82), Expect = 7.2, Method: Compositional matrix adjust. Identities = 21/74 (28%), Positives = 41/74 (55%), Gaps = 4/74 (5%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYKEQFS 86 +++LL GK +LD G G + R + + G++ V +D + ++ + D++ F+ Sbjct: 36 MLSLLPDLTGKKLLDLACGTGEHLRLYLERGADFVTGMDLSAAMLRQAEKNLADFRPHFT 95 Query: 87 LFQAT---FSQLQD 97 L+QA+ FSQL + Sbjct: 96 LYQASMEDFSQLAE 109 >gi|312878905|ref|ZP_07738705.1| precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit [Aminomonas paucivorans DSM 12260] gi|310782196|gb|EFQ22594.1| precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit [Aminomonas paucivorans DSM 12260] Length = 429 Score = 36.2 bits (82), Expect = 7.9, Method: Compositional matrix adjust. Identities = 18/43 (41%), Positives = 26/43 (60%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFA 70 V+ALL P G IL+ G GG + + GS V++L+R+P A Sbjct: 265 VLALLAPLEGSRILEIGTGTGGVTAELARAGSRVVSLERNPEA 307 >gi|119897391|ref|YP_932604.1| 23S rRNA 5-methyluridine methyltransferase [Azoarcus sp. BH72] gi|143580584|sp|A1K4G2|RUMA_AZOSB RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|119669804|emb|CAL93717.1| putative 23S rRNA (Uracil-5-) methyltransferase [Azoarcus sp. BH72] Length = 433 Score = 36.2 bits (82), Expect = 8.4, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 7/85 (8%) Query: 23 VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR--- 79 +L+ + + LL PAPG+ I D G G +S + G+ V+ ++ V+ E R Sbjct: 271 LLIRRAMQLLQPAPGERIADLFCGLGNFSLPIARRGATVVGVEGSEALVARALENARRNG 330 Query: 80 -DYKEQF---SLFQATFSQLQDYVP 100 D + +F +LF AT L P Sbjct: 331 LDSRTEFHAANLFDATEDSLAALGP 355 >gi|323697914|ref|ZP_08109826.1| ribosomal L11 methyltransferase [Desulfovibrio sp. ND132] gi|323457846|gb|EGB13711.1| ribosomal L11 methyltransferase [Desulfovibrio desulfuricans ND132] Length = 287 Score = 35.8 bits (81), Expect = 8.7, Method: Compositional matrix adjust. Identities = 42/156 (26%), Positives = 59/156 (37%), Gaps = 38/156 (24%) Query: 35 APGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQ 94 A GK LD G+G K+G I LD DP AV C E + Sbjct: 146 AEGKTFLDLGTGSGILGIGLSKLGLTGIGLDIDPQAVVCAVENV---------------- 189 Query: 95 LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ------KSGPLDMRMSCSGISASDVV 148 +GV + ++ IDC + G +F SGPL + M A D+V Sbjct: 190 --------AANGVTESMRLAVGSIDCVEPGRTFDLVVANILSGPL-IEM------AGDIV 234 Query: 149 NQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 + + GIL +KQ+ +A A +R P Sbjct: 235 ARVRPGGTLVLSGILA-DKQSDAVAEAYGRRGLGEP 269 >gi|254251994|ref|ZP_04945312.1| SAM-dependent methyltransferase [Burkholderia dolosa AUO158] gi|124894603|gb|EAY68483.1| SAM-dependent methyltransferase [Burkholderia dolosa AUO158] Length = 200 Score = 35.8 bits (81), Expect = 8.7, Method: Compositional matrix adjust. Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%) Query: 32 LNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDP 68 L PA G +LD G G ++R F G V+ALDRDP Sbjct: 28 LVPA-GGAVLDVAAGGGRHARWFASRGHPVVALDRDP 63 >gi|326201088|ref|ZP_08190960.1| Methyltransferase type 11 [Clostridium papyrosolvens DSM 2782] gi|325988656|gb|EGD49480.1| Methyltransferase type 11 [Clostridium papyrosolvens DSM 2782] Length = 241 Score = 35.8 bits (81), Expect = 9.3, Method: Compositional matrix adjust. Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 2/84 (2%) Query: 36 PGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95 P K +LD G GGYS + G NV A+D D V + ++ + Q +L Sbjct: 32 PPKSVLDIACGTGGYSLELDRRGYNVTAVDLDKEMVRRLEVKAKENNQSVKFMQGNMLEL 91 Query: 96 QDYVPDKGVDGVVFDLGVSSMQID 119 Q+ + D +VF +G S + ++ Sbjct: 92 QNKISDSF--DLVFCIGNSIVHLE 113 Searching..................................................done Results from round 2 >gi|255764511|ref|YP_003065518.2| S-adenosyl-methyltransferase MraW [Candidatus Liberibacter asiaticus str. psy62] gi|254547862|gb|ACT57578.2| S-adenosyl-methyltransferase MraW [Candidatus Liberibacter asiaticus str. psy62] Length = 341 Score = 491 bits (1264), Expect = e-137, Method: Composition-based stats. Identities = 341/341 (100%), Positives = 341/341 (100%) Query: 1 MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN 60 MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN Sbjct: 1 MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN 60 Query: 61 VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDC 120 VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDC Sbjct: 61 VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDC 120 Query: 121 GDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 GDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR Sbjct: 121 GDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 Query: 181 QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK Sbjct: 181 QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV Sbjct: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300 Query: 301 AFNRRSRSAKLRAGMRTVERSIEDDSFVHLPRLPTLSQFRG 341 AFNRRSRSAKLRAGMRTVERSIEDDSFVHLPRLPTLSQFRG Sbjct: 301 AFNRRSRSAKLRAGMRTVERSIEDDSFVHLPRLPTLSQFRG 341 >gi|315122411|ref|YP_004062900.1| S-adenosyl-methyltransferase MraW [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495813|gb|ADR52412.1| S-adenosyl-methyltransferase MraW [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 348 Score = 433 bits (1114), Expect = e-119, Method: Composition-based stats. Identities = 264/342 (77%), Positives = 298/342 (87%), Gaps = 1/342 (0%) Query: 1 MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN 60 M+S+ K SS I T H+PVLLE+VIALL P+PGK+I+DATFGAGGYS SFC+MGS+ Sbjct: 1 MKSRYLKETSSPIDSTTNGHIPVLLEEVIALLKPSPGKIIVDATFGAGGYSHSFCQMGSS 60 Query: 61 VIALDRDPFAVSCGQETMRDY-KEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQID 119 VIALDRDP AV+ GQE M+DY K++ SLF+ATFS+L+DYVPD GVDG+VFDLGVSSMQID Sbjct: 61 VIALDRDPLAVAAGQEIMKDYIKKKISLFEATFSRLKDYVPDNGVDGIVFDLGVSSMQID 120 Query: 120 CGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 CGDRGFSFQK GPLDMRMSCSG+SASDVVN A+VKDL RILGILGEEKQASRIAHAIVKR Sbjct: 121 CGDRGFSFQKHGPLDMRMSCSGVSASDVVNHADVKDLIRILGILGEEKQASRIAHAIVKR 180 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 R+ PFQTT+DLSSLIQ TVY NNRIHPATRSFQALRIFVN+EI EL +GL SAEKAL Sbjct: 181 RKHLPFQTTEDLSSLIQNTVYIRNNNRIHPATRSFQALRIFVNDEIRELEKGLLSAEKAL 240 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 K GG+LIVVSFHSLEDRLVKKFFASRSGKV AVRHMIPS+ HPAVFQS+TKKVV+PTQ D Sbjct: 241 KDGGVLIVVSFHSLEDRLVKKFFASRSGKVTAVRHMIPSHIHPAVFQSLTKKVVIPTQSD 300 Query: 300 VAFNRRSRSAKLRAGMRTVERSIEDDSFVHLPRLPTLSQFRG 341 +A NRR+RSAKLR G+RT + ++D SF +L LP LSQFRG Sbjct: 301 IAKNRRARSAKLRVGIRTSAQPMKDLSFEYLAHLPALSQFRG 342 >gi|323701280|ref|ZP_08112955.1| S-adenosyl-methyltransferase MraW [Desulfotomaculum nigrificans DSM 574] gi|323533882|gb|EGB23746.1| S-adenosyl-methyltransferase MraW [Desulfotomaculum nigrificans DSM 574] Length = 311 Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats. Identities = 113/307 (36%), Positives = 171/307 (55%), Gaps = 9/307 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 H+ VLL++ I LN P + +D T G G+S + G +I LD+DP A++ + Sbjct: 4 KHISVLLKESINGLNINPQGIYVDCTLGGAGHSTEILRRLGPGGRLIGLDQDPAAIANAE 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + ++ + +F +A F ++ + + G VDGV+FDLGVSS Q+D +RGFS+ Sbjct: 64 QRLQRFAGRFQAVRANFVGIKQVLAELGISTVDGVLFDLGVSSYQLDTPERGFSYMHDAE 123 Query: 133 LDMRMSCSGIS-ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + A ++VN ++LT I+ GEE+ A RIA IV+ RQ P TT L Sbjct: 124 LDMRMDPDQPTSAKELVNDLPEEELTNIIRKYGEERWAKRIASFIVRERQRRPITTTGQL 183 Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+ V ++ HPA R+FQALRI VNNE+ L ++ A + LK GG + V++F Sbjct: 184 VEIIKAAVPANARREGPHPAKRTFQALRIAVNNELGILKGAIQGAVQVLKPGGRICVITF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR++K F + + + + IT K + P E++A+N R+RSA Sbjct: 244 HSLEDRIIKDTFKELANPCTCPPSFPVCNCGKQPQVKIITNKPIEPGAEELAYNPRARSA 303 Query: 310 KLRAGMR 316 KLR + Sbjct: 304 KLRIAEK 310 >gi|254976251|ref|ZP_05272723.1| S-adenosyl-methyltransferase [Clostridium difficile QCD-66c26] gi|255093637|ref|ZP_05323115.1| S-adenosyl-methyltransferase [Clostridium difficile CIP 107932] gi|255315386|ref|ZP_05356969.1| S-adenosyl-methyltransferase [Clostridium difficile QCD-76w55] gi|255518051|ref|ZP_05385727.1| S-adenosyl-methyltransferase [Clostridium difficile QCD-97b34] gi|255651167|ref|ZP_05398069.1| S-adenosyl-methyltransferase [Clostridium difficile QCD-37x79] gi|260684233|ref|YP_003215518.1| S-adenosyl-methyltransferase MraW [Clostridium difficile CD196] gi|260687892|ref|YP_003219026.1| S-adenosyl-methyltransferase MraW [Clostridium difficile R20291] gi|306521014|ref|ZP_07407361.1| S-adenosyl-methyltransferase MraW [Clostridium difficile QCD-32g58] gi|260210396|emb|CBA64792.1| S-adenosyl-methyltransferase [Clostridium difficile CD196] gi|260213909|emb|CBE05954.1| S-adenosyl-methyltransferase [Clostridium difficile R20291] Length = 311 Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats. Identities = 115/308 (37%), Positives = 172/308 (55%), Gaps = 9/308 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 HV VLL + I LN P V +D T G G+S+ K S+ I D+D A+S + Sbjct: 4 HHVSVLLNECIENLNIKPDGVYVDCTMGGAGHSKEIVKKLSDKGLFIGFDQDKNAISTAK 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + +Y+ + + F +++ + GV DGV+ DLGVSS Q+D DRGFS+ + P Sbjct: 64 ERLSEYESRVKFVHSNFENIKEELEKIGVYKIDGVLADLGVSSHQLDEADRGFSYMQDAP 123 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM SA DVVN +LT+I+ GE+ A RIA IV+ R + P +TT L Sbjct: 124 LDMRMDVRCEFSAYDVVNTYTEDELTKIIKDYGEDNWAKRIAKFIVEERANKPIETTGKL 183 Query: 192 SSLIQKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+K + + HPA R+FQA+RI VNNE+ + + + A + GG + +++F Sbjct: 184 VDIIKKAIPKKARIDGPHPAKRTFQAIRIEVNNELGVITKMINDASSIMNKGGRICIITF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK F + + +H I + + IT+K ++P++E++ N RSRSA Sbjct: 244 HSLEDRIVKNAFKHLASDCICPQHLPICQCDKESEVKIITRKPILPSEEEIEVNPRSRSA 303 Query: 310 KLRAGMRT 317 KLR + Sbjct: 304 KLRVAEKI 311 >gi|255101826|ref|ZP_05330803.1| S-adenosyl-methyltransferase [Clostridium difficile QCD-63q42] gi|255307693|ref|ZP_05351864.1| S-adenosyl-methyltransferase [Clostridium difficile ATCC 43255] Length = 311 Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats. Identities = 115/308 (37%), Positives = 173/308 (56%), Gaps = 9/308 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 HV VLL + I LN P V +D T G G+S+ K S+ I D+D A+S + Sbjct: 4 HHVSVLLNECIENLNIKPDGVYVDCTMGGAGHSKEIVKKLSDKGLFIGFDQDKNAISTAK 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + +Y+ + + F +++ + GV DGV+ DLGVSS Q+D DRGFS+ + P Sbjct: 64 ERLSEYESRVKFVHSNFENIKEELEKIGVYKIDGVLADLGVSSHQLDEADRGFSYMQDAP 123 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM SA DVVN +LT+I+ GE+ A RIA IV+ R + P +TT +L Sbjct: 124 LDMRMDVRCEFSAYDVVNTYTEDELTKIIKDYGEDNWAKRIAKFIVEERANKPIETTGEL 183 Query: 192 SSLIQKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+K + + HPA R+FQA+RI VNNE+ + + + A + GG + +++F Sbjct: 184 VDVIKKAIPKKARIDGPHPAKRTFQAIRIEVNNELGVITKMINDASSIMNEGGRICIITF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK F + + +H I + + IT+K ++P++E++ N RSRSA Sbjct: 244 HSLEDRIVKNAFKHLASDCICPQHLPICQCDKESEVKIITRKPILPSEEEIEVNPRSRSA 303 Query: 310 KLRAGMRT 317 KLR + Sbjct: 304 KLRVAEKI 311 >gi|210622330|ref|ZP_03293099.1| hypothetical protein CLOHIR_01047 [Clostridium hiranonis DSM 13275] gi|210154318|gb|EEA85324.1| hypothetical protein CLOHIR_01047 [Clostridium hiranonis DSM 13275] Length = 311 Score = 411 bits (1056), Expect = e-112, Method: Composition-based stats. Identities = 112/307 (36%), Positives = 171/307 (55%), Gaps = 9/307 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 +HV VLL + I LN P V +D T G G+S+ K S+ I D+D A++ + Sbjct: 4 NHVSVLLNECIDNLNIKPDGVYVDCTMGGAGHSKEIVKRLSSDGLFIGFDQDKNAIATAK 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + +Y ++ + F +++ + GV DGV+ DLGVSS Q+D DRGFS+ + P Sbjct: 64 ERLAEYSDRVKFVHSNFENIKEELEKIGVHKIDGVLADLGVSSHQLDEADRGFSYMQDAP 123 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM SA +VVN+ ++L +I+ GE+ A RIA IV+ R P +TT +L Sbjct: 124 LDMRMDVRKDFSAYNVVNEYTEEELAKIIKDYGEDNWAKRIAKFIVEGRAEKPIETTGEL 183 Query: 192 SSLIQKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+K + + HPA R+FQA+RI VNNE+ + + + A + GG + +++F Sbjct: 184 VDIIKKAIPKKARIDGPHPAKRTFQAIRIEVNNELGVITKMIDDACSIMNPGGRICIITF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK F S + M + + IT+K ++P+ E++ N RSRSA Sbjct: 244 HSLEDRIVKNEFKYLSLDCVCPPEMPFCQCDKVSEVKVITRKPILPSAEEIEMNPRSRSA 303 Query: 310 KLRAGMR 316 KLR + Sbjct: 304 KLRVAEK 310 >gi|126700272|ref|YP_001089169.1| S-adenosyl-methyltransferase MraW [Clostridium difficile 630] gi|123174036|sp|Q182Z2|RSMH_CLOD6 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|115251709|emb|CAJ69544.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Clostridium difficile] Length = 311 Score = 411 bits (1056), Expect = e-112, Method: Composition-based stats. Identities = 115/308 (37%), Positives = 172/308 (55%), Gaps = 9/308 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 HV VLL + I LN P V +D T G G+S+ K S+ I D+D A+S + Sbjct: 4 HHVSVLLNECIENLNIKPDGVYVDCTMGGAGHSKEIVKKLSDKGLFIGFDQDKNAISTAK 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + +Y+ + + F +++ + GV DGV+ DLGVSS Q+D DRGFS+ + P Sbjct: 64 ERLSEYESRVKFVHSNFENIKEELEKIGVYKIDGVLADLGVSSHQLDEADRGFSYMQDAP 123 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM SA DVVN +LT+I+ GE+ A RIA IV+ R + P +TT +L Sbjct: 124 LDMRMDVRCEFSAYDVVNTYTEDELTKIIKDYGEDNWAKRIAKFIVEERANKPIETTGEL 183 Query: 192 SSLIQKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+K + HPA R+FQA+RI VNNE+ + + + A + GG + +++F Sbjct: 184 VDVIKKAIPKKARIVGPHPAKRTFQAIRIEVNNELGVITKMINDASSIMNEGGRICIITF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK F + + +H I + + IT+K ++P++E++ N RSRSA Sbjct: 244 HSLEDRIVKNAFKHLASDCICPQHLPICQCDKESEVKIITRKPILPSEEEIEVNPRSRSA 303 Query: 310 KLRAGMRT 317 KLR + Sbjct: 304 KLRVAEKI 311 >gi|255656635|ref|ZP_05402044.1| S-adenosyl-methyltransferase [Clostridium difficile QCD-23m63] gi|296449909|ref|ZP_06891673.1| S-adenosyl-methyltransferase MraW [Clostridium difficile NAP08] gi|296878290|ref|ZP_06902299.1| S-adenosyl-methyltransferase MraW [Clostridium difficile NAP07] gi|296261179|gb|EFH08010.1| S-adenosyl-methyltransferase MraW [Clostridium difficile NAP08] gi|296430738|gb|EFH16576.1| S-adenosyl-methyltransferase MraW [Clostridium difficile NAP07] Length = 311 Score = 410 bits (1055), Expect = e-112, Method: Composition-based stats. Identities = 114/308 (37%), Positives = 172/308 (55%), Gaps = 9/308 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 HV VLL + I LN P V +D T G G+S+ K S+ I D+D A++ + Sbjct: 4 HHVSVLLNECIENLNIKPDGVYVDCTMGGAGHSKEIVKKLSDKGLFIGFDQDKNAINTAK 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + +Y+ + + F +++ + GV DGV+ DLGVSS Q+D DRGFS+ + P Sbjct: 64 ERLSEYEGRVKFVHSNFENIKEELEKIGVYKIDGVLADLGVSSHQLDEADRGFSYMQDAP 123 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM SA DVVN +LT+I+ GE+ A RIA IV+ R + +TT +L Sbjct: 124 LDMRMDVRCEFSAYDVVNTYTEDELTKIIKDYGEDNWAKRIAKFIVEERANKTIETTGEL 183 Query: 192 SSLIQKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+K + + HPA R+FQA+RI VNNE+ + + + A + GG + +++F Sbjct: 184 VDIIKKAIPKKARIDGPHPAKRTFQAIRIEVNNELGVITKMINDASSIMNEGGRICIITF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK F + + +H I + + IT+K ++P++E+V N RSRSA Sbjct: 244 HSLEDRIVKNAFKYLASDCICPQHLPICQCDKESEVKIITRKPILPSEEEVEANPRSRSA 303 Query: 310 KLRAGMRT 317 KLR + Sbjct: 304 KLRVAEKI 311 >gi|78043538|ref|YP_360897.1| S-adenosyl-methyltransferase MraW [Carboxydothermus hydrogenoformans Z-2901] gi|88909191|sp|Q3AAD7|RSMH_CARHZ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|77995653|gb|ABB14552.1| S-adenosyl-methyltransferase MraW [Carboxydothermus hydrogenoformans Z-2901] Length = 311 Score = 410 bits (1055), Expect = e-112, Method: Composition-based stats. Identities = 128/303 (42%), Positives = 177/303 (58%), Gaps = 6/303 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQETM 78 HVPVLL + I LN G V +DAT G GG+S K V+ LD+D A++ + + Sbjct: 5 HVPVLLNETIEHLNLKAGGVYVDATLGGGGHSEEILKRADCRVVGLDQDEDALNHAAKRL 64 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + ++F ++ F ++ V G VDGV+ DLGVSS Q+D +GFSFQ GPLDM Sbjct: 65 APFGDRFIPVKSNFRNIRKVVYRLGLDAVDGVLMDLGVSSFQLDNPLKGFSFQHDGPLDM 124 Query: 136 RMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM +A+DVVN K+L RI GEE+ A +IA AIVKRR+ PF +T +L+ Sbjct: 125 RMDPQNPKTAADVVNTYPEKELIRIFYEYGEERYAPQIARAIVKRREKKPFTSTLELAEE 184 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 I + V HPA R FQA+RI VN+E+ L +GL A + LK GG ++V++FHSLE Sbjct: 185 IIRAVPAKARREKHPAKRVFQAIRIEVNDELSSLEEGLVGAVEVLKPGGRIVVITFHSLE 244 Query: 255 DRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 DRLVK FF + + + + ITKK +VP++E++ NRR+ SAKLRA Sbjct: 245 DRLVKNFFRREENPCICPKDFPMCVCGKKPRLKVITKKPLVPSEEEIEKNRRAHSAKLRA 304 Query: 314 GMR 316 + Sbjct: 305 AEK 307 >gi|229086483|ref|ZP_04218655.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus Rock3-44] gi|228696800|gb|EEL49613.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus Rock3-44] Length = 332 Score = 409 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 114/310 (36%), Positives = 174/310 (56%), Gaps = 9/310 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72 T+ HV VLL++ + L+ PG +D T G GG+S G +IA D+D A+ Sbjct: 22 TMFKHVTVLLKETVDGLDIKPGGTYVDCTLGGGGHSSYLLSRLTEGGKLIAFDQDEIAIQ 81 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK 129 +E Y +QF ++ F L + + + G VDG++FDLGVSS Q+D +RGFS+ Sbjct: 82 NAKEKFSSYGDQFVTVKSNFRYLSEKLQELGITEVDGILFDLGVSSPQLDTPERGFSYHH 141 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM ++A +VVN + + L RI GEEK + +IA I R++ +TT Sbjct: 142 DAPLDMRMDQDASLTAYEVVNNWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKTIETT 201 Query: 189 QDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L LI++ + ++ HPA R FQA+RI VN+E++ + L SA K +K GG + V Sbjct: 202 GELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIKMVKPGGRVSV 261 Query: 248 VSFHSLEDRLVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 ++FHSLEDR+ K F S + I + + IT+K ++P++E++ N R+ Sbjct: 262 ITFHSLEDRICKTTFKRNSSTPQLPPGLPIIPDEFKPKLKLITRKPILPSEEELEENNRA 321 Query: 307 RSAKLRAGMR 316 RSAKLR + Sbjct: 322 RSAKLRIAEK 331 >gi|226313432|ref|YP_002773326.1| S-adenosyl-methyltransferase MraW [Brevibacillus brevis NBRC 100599] gi|263445821|sp|C0ZGB3|RSMH_BREBN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|226096380|dbj|BAH44822.1| S-adenosyl-methyltransferase [Brevibacillus brevis NBRC 100599] Length = 314 Score = 409 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 116/317 (36%), Positives = 191/317 (60%), Gaps = 13/317 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALD 65 M++ H HV VL+++ + LN PG + +D T G G+S G +IA+D Sbjct: 1 MTTLSFH----HVTVLMDEAVQGLNIRPGGIYVDCTLGGAGHSSLIASKLTEGGRLIAID 56 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGD 122 +D +A+ +E + Y ++ +L ++ F ++D V D GVDGV+FDLGVSS Q+D G+ Sbjct: 57 QDDWALDNARERLASYMDRVTLVKSNFRHIKDIVKDLGLSGVDGVLFDLGVSSPQLDEGE 116 Query: 123 RGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFS+ PLDMRM +SA D++N+ + +++ +I+ + GEEK + RIA IV++R+ Sbjct: 117 RGFSYNADAPLDMRMDQQAPLSAYDIINEWDEEEIAKIIWLYGEEKFSRRIARQIVQQRK 176 Query: 182 SAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 P QTT +L LI++ + + + HPA R+FQA+RI VN+E++ + + A + L Sbjct: 177 KQPIQTTGELVELIKEGIPAAARRTGPHPAKRTFQAIRIAVNDELDAFKEAVVDAIEVLN 236 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQED 299 G + V++FHSLEDR+ K+ + S I + + AV + IT+K ++P++E+ Sbjct: 237 PEGRVSVITFHSLEDRICKQIYQDFSKGCTCPPAFPICTCGNKAVVKVITRKPILPSEEE 296 Query: 300 VAFNRRSRSAKLRAGMR 316 + N+R+RSAKLR + Sbjct: 297 LEANKRARSAKLRVAEK 313 >gi|228992654|ref|ZP_04152580.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus pseudomycoides DSM 12442] gi|228766986|gb|EEM15623.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus pseudomycoides DSM 12442] Length = 317 Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats. Identities = 114/310 (36%), Positives = 173/310 (55%), Gaps = 9/310 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72 T+ HV VLL++ + L+ PG +D T G GG+S G +IA D+D A+ Sbjct: 7 TMFKHVTVLLKETVDGLDIKPGGTYVDCTLGGGGHSSYLLSQLTEGGKLIAFDQDEIAIQ 66 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK 129 +E Y +QF ++ F L + + + G VDG++FDLGVSS Q+D +RGFS+ Sbjct: 67 NAKERFSSYGDQFITVKSNFRYLSEKLHELGITEVDGILFDLGVSSPQLDTPERGFSYHH 126 Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM ++A DVVN + + L RI GEEK + +IA I R++ +TT Sbjct: 127 DAPLDMRMDQDAPLTAYDVVNNWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETT 186 Query: 189 QDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L LI++ + ++ HPA R FQA+RI VN+E++ + L SA + +K GG + V Sbjct: 187 GELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRISV 246 Query: 248 VSFHSLEDRLVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 ++FHSLEDR+ K F S + I + + IT+K ++P+ E++ N R+ Sbjct: 247 ITFHSLEDRICKTTFKRNSTTPQLPPGLPIIPDEFKPKLKLITRKPILPSDEELEENNRA 306 Query: 307 RSAKLRAGMR 316 RSAKLR + Sbjct: 307 RSAKLRIAEK 316 >gi|164686379|ref|ZP_02210409.1| hypothetical protein CLOBAR_02817 [Clostridium bartlettii DSM 16795] gi|164601981|gb|EDQ95446.1| hypothetical protein CLOBAR_02817 [Clostridium bartlettii DSM 16795] Length = 311 Score = 408 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 113/307 (36%), Positives = 169/307 (55%), Gaps = 9/307 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 +HV VLL++ I LN V +D T G G+S+ K S I D+D A++ + Sbjct: 4 NHVSVLLDECIDNLNIKEDGVYVDCTMGGAGHSKEIVKRLSKDGLFIGFDQDKNAIATAK 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + +Y ++ + FS +++ + GV DGV+ DLGVSS Q+D DRGFS+ P Sbjct: 64 ERLAEYSDRVRFVHSNFSNIKEELEKIGVYKIDGVLADLGVSSHQLDEADRGFSYMHDAP 123 Query: 133 LDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM SA DVVN + L +I+ GE+ A RIA IV+ R+ P + T +L Sbjct: 124 LDMRMDIRKPFSAYDVVNTYTEEQLAKIIKDYGEDNWAKRIAKFIVETREEKPIEKTGEL 183 Query: 192 SSLIQKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+K + + HPA R+FQA+RI VNNE+ + + + A + GG + +++F Sbjct: 184 VDIIKKAIPKKARIDGPHPAKRTFQAIRIEVNNELGVINKMIDDAVSMMNKGGRICIITF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK F S + I + + IT+K ++P++E+V N RSRSA Sbjct: 244 HSLEDRIVKNEFKELSLSCVCPPELPICRCDKVSEVKVITRKPILPSKEEVEANPRSRSA 303 Query: 310 KLRAGMR 316 KLR + Sbjct: 304 KLRVAEK 310 >gi|251797883|ref|YP_003012614.1| S-adenosyl-methyltransferase MraW [Paenibacillus sp. JDR-2] gi|262824736|sp|C6D563|RSMH_PAESJ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|247545509|gb|ACT02528.1| S-adenosyl-methyltransferase MraW [Paenibacillus sp. JDR-2] Length = 316 Score = 408 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 114/315 (36%), Positives = 176/315 (55%), Gaps = 15/315 (4%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSC 73 + H+ VLLE+ + L PG + +D T G G+S G +IA D+D A+ Sbjct: 1 MFQHITVLLEEAVDGLAIKPGGIYVDCTLGGAGHSERIVSQLSGGGRLIAFDQDDAALDN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---------DGVVFDLGVSSMQIDCGDRG 124 + + Y ++ +L ++ F L++ + V DG++FDLGVSS Q+D +RG Sbjct: 61 ARVRLAPYMDRVTLVKSNFRYLEEMLLTCDVPTVDGVPQVDGILFDLGVSSPQLDEAERG 120 Query: 125 FSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 FS+ PLDMRM G ++A D+VN ++++RIL + GEEK A IA IV+ R++A Sbjct: 121 FSYNHDAPLDMRMDQGGALTAYDIVNSWEEREISRILHVYGEEKFARSIARKIVQARENA 180 Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 P +TT +L+ L++ + + + HPA RSFQALRI VN+E+ L A K ++ G Sbjct: 181 PIETTGELAELVKTGIPAAARRTGGHPAKRSFQALRIAVNDELGAEEDALEEAVKCIRPG 240 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVA 301 G + V++FHSLEDR+ K+ FAS K + + +K +VPT++++ Sbjct: 241 GRISVITFHSLEDRICKQLFASYVEKCTCPPDFPKCVCGGTGKLRLVNRKPIVPTEQELE 300 Query: 302 FNRRSRSAKLRAGMR 316 N RSRSAKLR + Sbjct: 301 VNPRSRSAKLRVAEK 315 >gi|228998700|ref|ZP_04158287.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus mycoides Rock3-17] gi|229006202|ref|ZP_04163888.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus mycoides Rock1-4] gi|228755043|gb|EEM04402.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus mycoides Rock1-4] gi|228761168|gb|EEM10127.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus mycoides Rock3-17] Length = 317 Score = 408 bits (1049), Expect = e-112, Method: Composition-based stats. Identities = 113/310 (36%), Positives = 172/310 (55%), Gaps = 9/310 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72 T+ HV VLL++ + L+ PG +D T G GG+S G +IA D+D A+ Sbjct: 7 TMFKHVTVLLKETVDGLDIKPGGTYVDCTLGGGGHSSYLLSQLTEGGKLIAFDQDEIAIQ 66 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK 129 +E Y +QF ++ F L + + + G VDG++FDLGVSS Q+D +RGFS+ Sbjct: 67 NAKERFSSYGDQFITVKSNFRYLSEKLHELGITEVDGILFDLGVSSPQLDTPERGFSYHH 126 Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM ++A DVVN + + L RI GEEK + +I I R++ +TT Sbjct: 127 DAPLDMRMDQDAPLTAYDVVNNWSYEQLVRIFFQYGEEKFSKQITRKIEAYRENKAIETT 186 Query: 189 QDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L LI++ + ++ HPA R FQA+RI VN+E++ + L SA + +K GG + V Sbjct: 187 GELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRISV 246 Query: 248 VSFHSLEDRLVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 ++FHSLEDR+ K F S + I + + IT+K ++P+ E++ N R+ Sbjct: 247 ITFHSLEDRICKTTFKRNSTTPQLPPGLPIIPDEFKPKLKLITRKPILPSDEELEENNRA 306 Query: 307 RSAKLRAGMR 316 RSAKLR + Sbjct: 307 RSAKLRIAEK 316 >gi|20808080|ref|NP_623251.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter tengcongensis MB4] gi|254479532|ref|ZP_05092851.1| S-adenosyl-methyltransferase MraW [Carboxydibrachium pacificum DSM 12653] gi|21759279|sp|Q8R9F9|RSMH_THETN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|20516663|gb|AAM24855.1| predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Thermoanaerobacter tengcongensis MB4] gi|214034534|gb|EEB75289.1| S-adenosyl-methyltransferase MraW [Carboxydibrachium pacificum DSM 12653] Length = 308 Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats. Identities = 118/304 (38%), Positives = 176/304 (57%), Gaps = 8/304 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77 H VLL++ I LN P + +D T G GG+S K +IA+DRD A+ +E Sbjct: 5 HKSVLLKETIEHLNINPEGIYVDGTLGGGGHSEEILKRLTTGKLIAIDRDEEAILAAKER 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++DYK + F +++ + + G VDG++ DLGVSS Q++ +RGFS+ K PLD Sbjct: 65 LKDYK-NVIYIKDNFKNIKEILRNLGIEKVDGILLDLGVSSYQLEEVERGFSYMKDAPLD 123 Query: 135 MRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM + SA DVVN+ + K+L R++ GEEK ASRIA IV+ R+ +TT L Sbjct: 124 MRMDKTSPFSAYDVVNRYSEKELERVIREYGEEKWASRIAKFIVEERKKGDIKTTSQLVE 183 Query: 194 LIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+K + ++ HPA R+FQA+RI VN E+++L + L + L+ G + V++FHS Sbjct: 184 IIKKAIPASARRTGPHPAKRTFQAIRIEVNEELKDLDRALEDMVEVLRGKGRIAVITFHS 243 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK F + + V + ITKK ++P++E+V N RSRSAKLR Sbjct: 244 LEDRIVKNTFKKLENPCTCPPGLPCTCGKQPVIKIITKKPILPSKEEVEENPRSRSAKLR 303 Query: 313 AGMR 316 + Sbjct: 304 VAEK 307 >gi|253576122|ref|ZP_04853454.1| MraW methylase MraW [Paenibacillus sp. oral taxon 786 str. D14] gi|251844465|gb|EES72481.1| MraW methylase MraW [Paenibacillus sp. oral taxon 786 str. D14] Length = 324 Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats. Identities = 113/316 (35%), Positives = 172/316 (54%), Gaps = 16/316 (5%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73 + H+ VL E+ L P + +D T G GG+S G +IA D+D +A+ Sbjct: 1 MFHHITVLKEEATEGLRIKPDGIYVDCTLGGGGHSSVILSKLGPGGRLIAFDQDDWALDN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD----------KGVDGVVFDLGVSSMQIDCGDR 123 +E + Y ++ +L ++ F ++ + + VDGV+FDLGVSS Q D G+R Sbjct: 61 AKERLAAYADKLTLVKSNFRYIEQKLREIEGVPQLNGVPQVDGVLFDLGVSSPQFDEGER 120 Query: 124 GFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GFS+ PLDMRM S ++A ++VN +++ RIL GEEK + IA I RR Sbjct: 121 GFSYNADAPLDMRMDQSAALTAREIVNTWPEREIARILFQYGEEKFSRWIAKVIADRRAQ 180 Query: 183 APFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 P +TT L LI++ + + + HPA RSFQALRI VN+E+ +GL +A + L Sbjct: 181 EPIETTGQLVELIKEGIPAAARRTGGHPAKRSFQALRIAVNDELGAFEEGLHAAIRCLAP 240 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDV 300 G + V++FHSLEDR+ K+ FAS K + + I +K +VP+++++ Sbjct: 241 EGRVSVITFHSLEDRICKQIFASYVEKCTCPPDFPMCVCGGKGSLKLINRKPIVPSEQEL 300 Query: 301 AFNRRSRSAKLRAGMR 316 A N R+RSAKLR + Sbjct: 301 ADNPRARSAKLRVAEK 316 >gi|319649673|ref|ZP_08003829.1| S-adenosyl-methyltransferase MraW [Bacillus sp. 2_A_57_CT2] gi|317398835|gb|EFV79517.1| S-adenosyl-methyltransferase MraW [Bacillus sp. 2_A_57_CT2] Length = 310 Score = 406 bits (1044), Expect = e-111, Method: Composition-based stats. Identities = 108/309 (34%), Positives = 171/309 (55%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + +H VLL++ + LN P V +D T G G+S + A D+D A++ Sbjct: 1 MFEHTTVLLKETVEGLNIHPDGVYVDCTLGGAGHSELILSQLSEKGKLYAFDQDDTAIAH 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E + +Y ++ ++ ++ F LQ+ + + GV DGV++DLGVSS Q+D +RGFS+ Sbjct: 61 AKEKLAEYGDRITIIKSNFKYLQEELANLGVSKVDGVLYDLGVSSPQLDTPERGFSYHND 120 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM + ISA DVVN+ +L +I GEEK + +IA I R+ +P +TT Sbjct: 121 APLDMRMDTGADISAYDVVNRWEYGELVKIFFRYGEEKFSKQIARKIEAAREVSPIETTG 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L LI++ + ++ HPA R FQA+RI VN+E+ L A L G + V+ Sbjct: 181 QLVELIKEAIPAPARRKGGHPAKRVFQAIRIAVNDELGVFEDSLHQAIDILNPNGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F S + I + + + + I +K ++P++E++ N R+R Sbjct: 241 TFHSLEDRICKAAFKKASETPNLPPGLPIIPDEYKPILKLINRKPILPSEEELEHNNRAR 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRIAEK 309 >gi|15965937|ref|NP_386290.1| S-adenosyl-methyltransferase MraW [Sinorhizobium meliloti 1021] gi|307308247|ref|ZP_07587956.1| S-adenosyl-methyltransferase MraW [Sinorhizobium meliloti BL225C] gi|307319714|ref|ZP_07599139.1| S-adenosyl-methyltransferase MraW [Sinorhizobium meliloti AK83] gi|20139051|sp|Q92NL4|RSMH_RHIME RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|15075206|emb|CAC46763.1| Probable SAM-dependent methytransferase [Sinorhizobium meliloti 1021] gi|306894645|gb|EFN25406.1| S-adenosyl-methyltransferase MraW [Sinorhizobium meliloti AK83] gi|306901245|gb|EFN31851.1| S-adenosyl-methyltransferase MraW [Sinorhizobium meliloti BL225C] Length = 341 Score = 406 bits (1043), Expect = e-111, Method: Composition-based stats. Identities = 179/323 (55%), Positives = 231/323 (71%), Gaps = 1/323 (0%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+PVLL++V+A L+PAPGK+ILD TFGAGGY+ + G++V+ALDRDP A++ GQ M Sbjct: 19 HIPVLLKEVLAALDPAPGKIILDGTFGAGGYASAILDAGADVVALDRDPTAIAAGQSMMH 78 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 + L + FS L ++ P +G+DGVV D+GVSSMQID +RGFSFQK GPLDMRMS Sbjct: 79 ASGGRLKLVHSRFSDLAEHAPAQGLDGVVLDIGVSSMQIDEAERGFSFQKKGPLDMRMSA 138 Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199 +G+SA+DVVN+A V DL RI G LGEEKQA RIA AI KRR PF+TT+DL++LI+ Sbjct: 139 AGVSAADVVNRAKVSDLIRIFGFLGEEKQAGRIARAIEKRRAETPFETTRDLANLIETVT 198 Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259 ++IHPATR FQALRIFVN+E+ ELA L +AE+ALK GG L+VV+FHSLEDR+VK Sbjct: 199 PRKAKDKIHPATRVFQALRIFVNDELGELAHALFAAERALKPGGRLVVVTFHSLEDRIVK 258 Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319 FF RSGK RH+ A A F + K +V ++E+ + N R+RSAKLRAG+RT Sbjct: 259 TFFQDRSGKAGGSRHLPLVTARAATFTPVGKPMVAASEEEASRNPRARSAKLRAGVRTEA 318 Query: 320 RSIEDD-SFVHLPRLPTLSQFRG 341 S D S +LP L +L++ G Sbjct: 319 PSPGADLSIFNLPELASLARLGG 341 >gi|325293473|ref|YP_004279337.1| S-adenosyl-methyltransferase MraW [Agrobacterium sp. H13-3] gi|325061326|gb|ADY65017.1| S-adenosyl-methyltransferase MraW [Agrobacterium sp. H13-3] Length = 341 Score = 405 bits (1041), Expect = e-111, Method: Composition-based stats. Identities = 185/333 (55%), Positives = 233/333 (69%), Gaps = 1/333 (0%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPF 69 SS H+PVLL +VIA L PA GKVILD TFGAGGY+++ G+NVIALDRDP Sbjct: 9 SSDAGEGPQRHIPVLLREVIAALEPASGKVILDGTFGAGGYTQAILDQGANVIALDRDPN 68 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 A++ GQ + + +L Q+ FS L + P+ G+DGVV D+GVSSMQID +RGFSFQK Sbjct: 69 AIAGGQAMVAANGGRLTLIQSQFSDLARHAPEGGLDGVVLDIGVSSMQIDEAERGFSFQK 128 Query: 130 SGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 +GPLDMRMS SG+SA+DVVN+A V DL RI G LGEEKQ RIA AI KRR PF+TT+ Sbjct: 129 NGPLDMRMSSSGVSAADVVNRAKVGDLIRIFGFLGEEKQPGRIARAIEKRRAEEPFRTTR 188 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 DL+ LI+ ++IHPATR FQALR+FVN+E+ ELAQ L +AE+ALK GG L+VV+ Sbjct: 189 DLAGLIEIVTPRKAKDKIHPATRVFQALRVFVNDELGELAQALFAAERALKPGGRLVVVT 248 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDR+VKKFF+ RSGK RH+ PA+F++I K +V + E+ N R+RSA Sbjct: 249 FHSLEDRIVKKFFSERSGKAAGSRHLPMVEDKPAIFENIGKPMVAASDEEAEINPRARSA 308 Query: 310 KLRAGMRTVERSI-EDDSFVHLPRLPTLSQFRG 341 KLRAG+RT + D S LP L +L + G Sbjct: 309 KLRAGLRTAAPARAADFSIFELPDLASLEKMGG 341 >gi|257870252|ref|ZP_05649905.1| methyltransferase [Enterococcus gallinarum EG2] gi|257804416|gb|EEV33238.1| methyltransferase [Enterococcus gallinarum EG2] Length = 319 Score = 404 bits (1040), Expect = e-111, Method: Composition-based stats. Identities = 112/312 (35%), Positives = 175/312 (56%), Gaps = 13/312 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H V+L++ + L P + +D T G G+S ++ A D+D A+ +E Sbjct: 6 HYTVMLKETVDGLAIRPDGIYVDCTLGGAGHSEYLLSQLSEEGHLYAFDQDQKAIDHAKE 65 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y K + ++ F L++ + +GVD GV++DLGVSS Q+D +RGFS+ + Sbjct: 66 RLAPYVAKGMVTFIKSNFRYLKEALQQQGVDQVSGVLYDLGVSSPQLDEAERGFSYHQDA 125 Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S ++A +VVNQ + L +I GEEK + +IA I + R + P +TT + Sbjct: 126 PLDMRMDQSAALTAYEVVNQFDYHQLVKIFFRYGEEKFSKQIAREIERTRANKPIETTGE 185 Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I+ + ++ HPA R FQA+RI VN+E+ + + L A L+ G + V++ Sbjct: 186 LVEIIKTAIPAPARRKGGHPAKRIFQAIRIAVNDELGVIEESLEQAIDLLEKNGRISVIT 245 Query: 250 FHSLEDRLVKKFFASRS--GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 FHSLEDR+VK F + S V +IP P V + IT+K ++P++E+V+ N RSR Sbjct: 246 FHSLEDRIVKSTFKAYSTPKDVPPGLPIIPEEFQP-VLKLITRKPLLPSEEEVSENNRSR 304 Query: 308 SAKLRAGMRTVE 319 SAKLR + E Sbjct: 305 SAKLRIAEKMKE 316 >gi|16078578|ref|NP_389397.1| S-adenosyl-methyltransferase MraW [Bacillus subtilis subsp. subtilis str. 168] gi|221309385|ref|ZP_03591232.1| S-adenosyl-methyltransferase MraW [Bacillus subtilis subsp. subtilis str. 168] gi|221313712|ref|ZP_03595517.1| S-adenosyl-methyltransferase MraW [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318634|ref|ZP_03599928.1| S-adenosyl-methyltransferase MraW [Bacillus subtilis subsp. subtilis str. JH642] gi|221322908|ref|ZP_03604202.1| S-adenosyl-methyltransferase MraW [Bacillus subtilis subsp. subtilis str. SMY] gi|1730600|sp|Q07876|RSMH_BACSU RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|1122760|emb|CAA92525.1| unknown [Bacillus subtilis subsp. subtilis str. 168] gi|2633885|emb|CAB13387.1| S-adenosyl-dependent methyltransferase active on membrane-located substrates [Bacillus subtilis subsp. subtilis str. 168] Length = 311 Score = 404 bits (1039), Expect = e-111, Method: Composition-based stats. Identities = 116/309 (37%), Positives = 172/309 (55%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H VLL + + LN P +D T G G+S + +IA D+D A+ Sbjct: 1 MFQHKTVLLRETVDGLNIKPDGTYVDCTLGGAGHSTYLLQQLSEKGRLIAFDQDDTALQH 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E + DYK Q L ++ F L++Y+ ++GV DG++FDLGVSS Q+D +RGFS+ Sbjct: 61 AKEVLSDYKGQLILIKSNFRYLKEYLNEQGVTEVDGILFDLGVSSPQLDTPERGFSYHHD 120 Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM S +SA +VVN+ +DL RI GEEK + +IA I + R +P QTT Sbjct: 121 APLDMRMDQSATLSAKEVVNEWRYEDLVRIFFKYGEEKFSKQIARKIEEARMKSPIQTTG 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L LI+ + ++ + HPA R FQA+RI VN+E+ + L A + LK GG + V+ Sbjct: 181 QLVDLIKDAIPAPARRSGGHPAKRVFQAIRIAVNDELRVFEEALEQAIEVLKPGGRVSVI 240 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F +S + + + IT+K + +QE++ N R+R Sbjct: 241 TFHSLEDRICKTTFKEKSSLPELPPGLPVIPEEFEPELKLITRKPITASQEELEENNRAR 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRIAEK 309 >gi|323489493|ref|ZP_08094720.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Planococcus donghaensis MPA1U2] gi|323396624|gb|EGA89443.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Planococcus donghaensis MPA1U2] Length = 312 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 110/312 (35%), Positives = 169/312 (54%), Gaps = 9/312 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSC 73 + +H VLL + + LN P + +D T G G+S ++ D+D A++ Sbjct: 1 MFNHTTVLLHETVDGLNVRPDGIYVDCTLGGAGHSEYLVQQLSDQGHLYCFDQDATAIAH 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E +++Y + + A F L++ + GV DG+++DLGVSS Q+D +RGFS+ Sbjct: 61 AKEKLQEYLHRITFIHANFKFLKEELEMHGVEKVDGILYDLGVSSPQLDTPERGFSYHND 120 Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM S +SA VVN+ + +DL RI GEEK + +IA I R+ P +TT Sbjct: 121 APLDMRMDQSAELSAYHVVNEWSFEDLVRIFYRYGEEKFSKQIARKIEAAREKQPIETTG 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L I+ + F++ HPA R FQA+RI VN+E+ L+ A L GG + V+ Sbjct: 181 QLVECIKDGIPAFARRKGGHPAKRVFQAIRIAVNDELGAAETSLQDAVSLLAIGGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K F S + + + + + IT+K ++P++E++ N RSR Sbjct: 241 TFHSLEDRLCKAIFKEASSLPELPPNLPVIPDGMEPILKLITRKPILPSEEELEHNNRSR 300 Query: 308 SAKLRAGMRTVE 319 SAKLR + E Sbjct: 301 SAKLRIAEKINE 312 >gi|227822659|ref|YP_002826631.1| S-adenosyl-methyltransferase MraW [Sinorhizobium fredii NGR234] gi|262825425|sp|C3MEN7|RSMH_RHISN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|227341660|gb|ACP25878.1| S-adenosyl-methyltransferase MraW [Sinorhizobium fredii NGR234] Length = 341 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 179/323 (55%), Positives = 233/323 (72%), Gaps = 1/323 (0%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+PV+L +V+A L PAPGKVILD TFGAGGY+ + G++VIALDRDP A++ GQ + Sbjct: 19 HIPVMLAEVLAALEPAPGKVILDGTFGAGGYTSAILDAGADVIALDRDPTAIAAGQPMVA 78 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 + L + FS+L D+VP+ G+DG+VFD+GVSSMQID +RGFSFQK GPLDMRMS Sbjct: 79 AAGGRLRLIHSRFSELADHVPEGGLDGIVFDIGVSSMQIDEAERGFSFQKKGPLDMRMSA 138 Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199 +G+SA+DVVN+A V DL RI G LGEEKQA RIA AI KRR APF+TT++L++LI+ Sbjct: 139 AGVSAADVVNRAKVSDLIRIFGFLGEEKQAGRIARAIEKRRAEAPFETTRNLANLIETVT 198 Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259 ++IHPATR FQALRIFVN+E+ ELA L +AE+ LK GG L+VV+FHSLEDR+VK Sbjct: 199 PRKAKDKIHPATRVFQALRIFVNDELGELANALFAAERVLKPGGRLVVVTFHSLEDRIVK 258 Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319 FF RSGK RH+ A A F + K +V ++++ + N R+RSAKLRAG+RT Sbjct: 259 TFFQDRSGKAGGSRHLPLVTARDATFTPVGKPMVAASEDEASRNPRARSAKLRAGVRTPA 318 Query: 320 RSIEDD-SFVHLPRLPTLSQFRG 341 S +D S +LP L +L++ G Sbjct: 319 ASPGNDLSIFNLPELASLARLGG 341 >gi|289578681|ref|YP_003477308.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter italicus Ab9] gi|289528394|gb|ADD02746.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter italicus Ab9] Length = 308 Score = 403 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 116/304 (38%), Positives = 173/304 (56%), Gaps = 8/304 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77 H VLL++ I LN P + +D T G GG+S K +IA+DRD A+ G+E Sbjct: 5 HKSVLLKETIEYLNIKPEGIYVDGTLGGGGHSEEILKRLTKGKLIAIDRDLDAIKAGKER 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 +++YK F +++ + GVD G++ DLGVSS Q++ +RGFS+ K PLD Sbjct: 65 LKNYK-NVKYINNNFKNIKEILKSLGVDKVDGIILDLGVSSFQLEEVERGFSYMKDAPLD 123 Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM + SA DVVN+ + ++L +++ GEEK ASRIA IVK R+ +TT L Sbjct: 124 MRMDKNSTFSAYDVVNKYSQQELEKVIREYGEEKWASRIAKFIVKEREKGEIKTTFQLVE 183 Query: 194 LIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ + ++ HPA R+FQA+RI VN E++ L + + + L+ G + +++FHS Sbjct: 184 IIKNAIPASARRKGPHPAKRTFQAIRIEVNEELKGLGKAIEDMVEVLRGKGRIAIITFHS 243 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK F +M V + ITKK VVP++E++ N RSRSAKLR Sbjct: 244 LEDRIVKNTFKKLENPCTCPPNMPCICGKKPVVKIITKKPVVPSKEEIETNSRSRSAKLR 303 Query: 313 AGMR 316 + Sbjct: 304 VAEK 307 >gi|159185048|ref|NP_355067.2| S-adenosyl-methyltransferase MraW [Agrobacterium tumefaciens str. C58] gi|20138929|sp|P58745|RSMH_AGRT5 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|159140322|gb|AAK87852.2| S-adenosyl methionine-dependent methytransferase [Agrobacterium tumefaciens str. C58] Length = 341 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 182/333 (54%), Positives = 234/333 (70%), Gaps = 1/333 (0%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPF 69 SS H+PVLL +VIA L PAPGK+ILD TFGAGGY+++ G+NVIALDRDP Sbjct: 9 SSDADGGPQRHIPVLLREVIAALEPAPGKIILDGTFGAGGYTQAILDQGANVIALDRDPT 68 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 A++ G+ + + SL Q+ FS L + P+ G+DGVV D+GVSSMQID +RGFSFQK Sbjct: 69 AIAGGEAMVVANGGRLSLIQSQFSDLAKHAPEDGLDGVVLDIGVSSMQIDEAERGFSFQK 128 Query: 130 SGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 +GPLDMRMS SG+SA+DVVN+A V DL RI G LGEEKQ RIA AI K+R PF+TT+ Sbjct: 129 NGPLDMRMSASGVSAADVVNRAKVGDLIRIFGFLGEEKQPGRIARAIEKKRAEEPFRTTR 188 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 DL+ LI+ ++IHPATR FQALR+FVN+E+ ELAQ L +AE++LK GG L+VV+ Sbjct: 189 DLAGLIEIVTPRKAKDKIHPATRVFQALRVFVNDELGELAQALFAAERSLKPGGRLVVVT 248 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDR+VKKFF+ RSGK RH+ PA+F++I K ++ + E+ N R+RSA Sbjct: 249 FHSLEDRIVKKFFSDRSGKAAGSRHLPMVEDKPAIFENIGKPMIAASDEEAELNPRARSA 308 Query: 310 KLRAGMRTVERSI-EDDSFVHLPRLPTLSQFRG 341 KLRAG+RT + D S LP L +L + G Sbjct: 309 KLRAGLRTTAPARAADFSIFELPDLASLEKMGG 341 >gi|329924124|ref|ZP_08279357.1| S-adenosyl-methyltransferase MraW [Paenibacillus sp. HGF5] gi|328940856|gb|EGG37166.1| S-adenosyl-methyltransferase MraW [Paenibacillus sp. HGF5] Length = 317 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 111/316 (35%), Positives = 172/316 (54%), Gaps = 16/316 (5%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSC 73 + H+ VL ++ L P + +D T G G+S +IALD+D +A++ Sbjct: 1 MFHHITVLKQEATEGLRIKPDGIYVDCTLGGAGHSSLIASQLSSEGRLIALDQDDWALNN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVP---------DKGVDGVVFDLGVSSMQIDCGDRG 124 +E M+ Y ++ +L + F L++ + VDG++FDLGVSS Q D G+RG Sbjct: 61 AREAMKPYADRITLVKTNFRDLEEVLRSEVGAGENGQPQVDGILFDLGVSSPQFDEGERG 120 Query: 125 FSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 FS+ PLDMRM S ++A+ +VN+ +++ RIL GEEK + RIA IV+RR + Sbjct: 121 FSYNHDAPLDMRMDQSAELTAAKIVNEWPEQEIARILYQYGEEKFSRRIAKVIVERRAQS 180 Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 P QTT +L +I++ + + + HPA RSFQA RI VN+E+ L A + L G Sbjct: 181 PIQTTGELVEMIKEGIPAAARRTGGHPAKRSFQAFRIAVNDELGAFEDALHQAVRCLAPG 240 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDV 300 G + V++FHSLEDR+ K+ F S K M + + +K ++P+ E++ Sbjct: 241 GRVSVITFHSLEDRICKQIFNSYIPKCTCPPDFPMCVCGGGQGDLKLVNRKPLIPSAEEI 300 Query: 301 AFNRRSRSAKLRAGMR 316 N R+RSAKLR + Sbjct: 301 ESNPRARSAKLRIAEK 316 >gi|308173479|ref|YP_003920184.1| S-adenosyl-dependent methyltransferase [Bacillus amyloliquefaciens DSM 7] gi|307606343|emb|CBI42714.1| S-adenosyl-dependent methyltransferase active on membrane-located substrates [Bacillus amyloliquefaciens DSM 7] gi|328553591|gb|AEB24083.1| 16S rRNA m(4)C1402 methyltranserfase [Bacillus amyloliquefaciens TA208] gi|328911615|gb|AEB63211.1| S-adenosyl-dependent methyltransferase active on membrane-located substrates [Bacillus amyloliquefaciens LL3] Length = 311 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 112/309 (36%), Positives = 173/309 (55%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H VLL + + LN P +D T G G+S + +IA D+D A+ Sbjct: 1 MFQHKTVLLRETVDGLNIKPDGTYVDCTLGGAGHSTYLLQQLSEKGRLIAFDQDDTALEN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 ++T+ +YK Q L ++ F L++ + + G VDG++FDLGVSS Q+D +RGFS+ Sbjct: 61 AKQTLSEYKGQLILVKSNFRYLKECLHEHGITSVDGILFDLGVSSPQLDTPERGFSYHHD 120 Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM S ++A +VVN+ +DL RI GEEK + +IA I + R+ +P QTT Sbjct: 121 APLDMRMDQSAALTAKEVVNEWRYEDLVRIFFKYGEEKFSKQIARKIEEAREKSPIQTTG 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L LI+ + ++ + HPA R FQA+RI VN+E++ + L A + LK GG + V+ Sbjct: 181 QLVDLIKDAIPAPARRSGGHPAKRVFQAIRIAVNDELQVFEEALLQAIEVLKPGGRVSVI 240 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F +S + + + IT+K + ++E++ N R+R Sbjct: 241 TFHSLEDRMCKTTFKEKSSLPELPPGLPVIPEEFEPELKLITRKPITASKEELEENNRAR 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRIAEK 309 >gi|118444716|ref|YP_878007.1| S-adenosyl-methyltransferase MraW [Clostridium novyi NT] gi|263446115|sp|A0Q055|RSMH_CLONN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|118135172|gb|ABK62216.1| S-adenosyl-methyltransferase MraW [Clostridium novyi NT] Length = 309 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 112/307 (36%), Positives = 165/307 (53%), Gaps = 9/307 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 +HVPVLLE+ I LN + +D T G G+S K +I +D+D A+ + Sbjct: 4 NHVPVLLEETIDSLNIKEDGIYVDCTLGGAGHSSEILKKLSKKGRLIGIDQDINAIKAAK 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E ++DY E + F L + + VDG++ DLGVSS Q+D +RGFS+ K Sbjct: 64 ERLKDY-ENVTYVHNNFYNLASILDELNVDKVDGILMDLGVSSYQLDTPERGFSYMKDAM 122 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ +GISA DVVN + DL RI+ GEE+ + +IA AIVK R P +TT +L Sbjct: 123 LDMRMNTENGISAYDVVNGYSEDDLFRIIKDYGEERFSRKIAKAIVKERNEKPVETTLEL 182 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + HPA ++FQA+RI VN+E+E L + + L G + V++FH Sbjct: 183 VKIIKDVIPMKFQQGGHPAKKTFQAIRIEVNHELEILNKTVEDGVNYLNPNGRISVITFH 242 Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR++K F + I V + +T+K + P + + N RSRS+K Sbjct: 243 SLEDRIIKTKFKELENPCTCPKEFPICVCGKKPVVKVVTRKPIEPNEFERENNSRSRSSK 302 Query: 311 LRAGMRT 317 LR + Sbjct: 303 LRVAQKI 309 >gi|158320404|ref|YP_001512911.1| S-adenosyl-methyltransferase MraW [Alkaliphilus oremlandii OhILAs] gi|263446681|sp|A8MH28|RSMH_ALKOO RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|158140603|gb|ABW18915.1| S-adenosyl-methyltransferase MraW [Alkaliphilus oremlandii OhILAs] Length = 311 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 117/308 (37%), Positives = 170/308 (55%), Gaps = 9/308 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 HV VLLE+ I LN + +D T G G+S K S+ +I +D+D A+ Sbjct: 4 KHVSVLLEECIENLNIKENGIYVDGTLGGAGHSSEIAKRLSDKGLLIGIDQDENAIKAAG 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + KE+ L + FS + + + G+DG++ DLGVSS Q+D DRGFS+ P Sbjct: 64 EKLTPMKERIKLVRDNFSNIDAILQNLEIDGIDGILLDLGVSSHQLDEADRGFSYMHDAP 123 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM +SA +VVN KDL I+ GEEK A RIA+ IV R+ P TT L Sbjct: 124 LDMRMDTRQAVSAMEVVNSYTEKDLENIIKNYGEEKWAKRIANFIVDFRKEEPITTTHQL 183 Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I++ + ++ + HPA R+FQA+RI VN E+E + + + A + L GG + +++F Sbjct: 184 VDVIKRAIPKGARIDGPHPAKRTFQAIRIEVNGELEIINKTIDDAVRNLNPGGRICIITF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK F S + I + IT+K +VPT+E++ N R+RSA Sbjct: 244 HSLEDRIVKNAFRDLSNPCICPPEFPICRCDRKPAVKIITRKPIVPTEEELELNPRARSA 303 Query: 310 KLRAGMRT 317 KLR + Sbjct: 304 KLRVAEKI 311 >gi|321315277|ref|YP_004207564.1| 16S rRNA m(4)C1402 methyltranserfase [Bacillus subtilis BSn5] gi|320021551|gb|ADV96537.1| 16S rRNA m(4)C1402 methyltranserfase [Bacillus subtilis BSn5] Length = 311 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 114/309 (36%), Positives = 171/309 (55%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H VLL + + LN P +D T G G+S + +IA D+D A+ Sbjct: 1 MFQHKTVLLRETVDGLNIKPDGTYVDCTLGGAGHSTYLLQQLSEKGRLIAFDQDDTALQH 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E + DYK Q L ++ F L++ + ++G VDG++FDLGVSS Q+D +RGFS+ Sbjct: 61 AKEVLSDYKGQLILIKSNFRYLKECLNEQGITEVDGILFDLGVSSPQLDTPERGFSYHHD 120 Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM S ++A +VVN+ +DL RI GEEK + +IA I + R +P QTT Sbjct: 121 APLDMRMDQSATLTAKEVVNEWRYEDLVRIFFKYGEEKFSKQIARKIEEARMKSPIQTTG 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L LI+ + ++ + HPA R FQA+RI VN+E+ + L A + LK GG + V+ Sbjct: 181 QLVDLIKDAIPAPARRSGGHPAKRVFQAIRIAVNDELRVFEEALEQAIEVLKPGGRVSVI 240 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F +S + + + IT+K + +QE++ N R+R Sbjct: 241 TFHSLEDRICKTTFKEKSSLPELPPGLPVIPEEFEPELKLITRKPITASQEELEENNRAR 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRIAEK 309 >gi|297544901|ref|YP_003677203.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842676|gb|ADH61192.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 308 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 115/304 (37%), Positives = 172/304 (56%), Gaps = 8/304 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77 H VLL++ I LN P + +D T G GG+S K +IA+DRD A+ +E Sbjct: 5 HKSVLLKETIEYLNIKPEGIYVDGTLGGGGHSEQILKRLTKGKLIAIDRDLDAIKASKER 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 +++YK F +++ + GVD G++ DLGVSS Q++ +RGFS+ K PLD Sbjct: 65 LKNYK-NVKYINNNFKNIKEILKSLGVDKVDGIILDLGVSSFQLEEVERGFSYMKDAPLD 123 Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM + SA DVVN+ + ++L +++ GEEK ASRIA IVK R+ +TT L Sbjct: 124 MRMDKNSTFSAYDVVNKYSQQELEKVIREYGEEKWASRIAKFIVKEREKGEIKTTFQLVE 183 Query: 194 LIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ + ++ HPA R+FQA+RI VN E++ L + + + L+ G + +++FHS Sbjct: 184 IIKNAIPASARRKGPHPAKRTFQAIRIEVNEELKGLGKAIEDMVEVLRGKGRIAIITFHS 243 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK F +M V + ITKK VVP++E++ N RSRSAKLR Sbjct: 244 LEDRIVKNTFKKLENPCTCPPNMPCICGKKPVVKIITKKPVVPSKEEIETNSRSRSAKLR 303 Query: 313 AGMR 316 + Sbjct: 304 VAEK 307 >gi|326791423|ref|YP_004309244.1| S-adenosyl-methyltransferase MraW [Clostridium lentocellum DSM 5427] gi|326542187|gb|ADZ84046.1| S-adenosyl-methyltransferase MraW [Clostridium lentocellum DSM 5427] Length = 311 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 112/307 (36%), Positives = 173/307 (56%), Gaps = 9/307 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQ 75 +HV VLL + I L P +D T G G++R + I +D+D A++ Sbjct: 4 EHVSVLLNECIEGLAIKPNGTYVDGTLGGAGHARVVCNYLTEEGHFIGIDQDKNALAVST 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E ++D K + S+ + F ++ + + +GVDG++ DLGVSS Q+D RGFS+ P Sbjct: 64 ERLKDVKPKVSIVNSNFEKVAEVLEVLGIEGVDGMLIDLGVSSHQLDEPSRGFSYMHDAP 123 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM G +A +VVN ++L RI+ GEEK A RIA IV+ R+ P +TT +L Sbjct: 124 LDMRMDQDGAYTAYEVVNDMAEEELFRIIKEYGEEKWAKRIAQFIVEERKQKPIETTYEL 183 Query: 192 SSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+K + ++ + HPA R+FQA+RI VN E+E + +++ L +GG L +++F Sbjct: 184 VEVIKKAIPQGARKDGPHPAKRTFQAIRIAVNRELEIIEPTIKAIVDKLNSGGRLCIITF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK F + H I + + IT+K ++P+ E++ N RSRSA Sbjct: 244 HSLEDRIVKHAFRNLENPCTCAPHIPICVCGKKPLVKVITRKPILPSDEEIEINPRSRSA 303 Query: 310 KLRAGMR 316 KLR + Sbjct: 304 KLRIIEK 310 >gi|167636587|ref|ZP_02394881.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0442] gi|170688833|ref|ZP_02880036.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0465] gi|254683371|ref|ZP_05147231.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. CNEVA-9066] gi|254743854|ref|ZP_05201537.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. Kruger B] gi|167528010|gb|EDR90816.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0442] gi|170667188|gb|EDT17948.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0465] Length = 310 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 112/309 (36%), Positives = 171/309 (55%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73 + +HV VLL++ + L+ P +D T G GG+S G +IA D+D A+ Sbjct: 1 MFNHVTVLLKETVDGLDIKPDGTYVDCTLGGGGHSSYLLSQLTEGGRLIAFDQDEIAIQN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E Y EQF ++ F L + + + G VDG++FDLGVSS Q+D +RGFS+ Sbjct: 61 AKEKFSSYGEQFITVKSNFRYLSEKLQELGITEVDGILFDLGVSSPQLDTPERGFSYHHD 120 Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM ++A DVVN + + L RI GEEK + +IA I R++ +TT Sbjct: 121 APLDMRMDQDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTG 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L LI++ + ++ HPA R FQA+RI VN+E++ + L SA + +K GG + V+ Sbjct: 181 ELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRVSVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F S + I + + IT+K ++P+ ++ N R+R Sbjct: 241 TFHSLEDRICKTTFKRNSTTPQLPPGLPITPDEFKPKLKLITRKPILPSDIELEENNRAR 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRIAEK 309 >gi|218235035|ref|YP_002368718.1| S-adenosyl-methyltransferase MraW [Bacillus cereus B4264] gi|263446873|sp|B7H6Q4|RSMH_BACC4 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|218162992|gb|ACK62984.1| S-adenosyl-methyltransferase MraW [Bacillus cereus B4264] Length = 310 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 113/309 (36%), Positives = 170/309 (55%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73 + HV VLL++ + LN P +D T G GG+S G +IA D+D A+ Sbjct: 1 MFKHVTVLLKETVDGLNIKPDGTYVDCTLGGGGHSSYLLSQLTEGGKLIAFDQDEIAIQN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E Y EQF ++ F L + + + G VDG++FDLGVSS Q+D +RGFS+ Sbjct: 61 AKEKFSSYGEQFITVKSNFRYLAEKLQEIGITEVDGILFDLGVSSPQLDTPERGFSYHHD 120 Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM ++A DVVN + + L RI GEEK + +IA I R++ +TT Sbjct: 121 APLDMRMDQDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTG 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L LI++ + ++ HPA R FQA+RI VN+E++ + L SA + +K GG + V+ Sbjct: 181 ELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRVSVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F S + I + + IT+K ++P+ ++ N R+R Sbjct: 241 TFHSLEDRICKTTFKRNSTTPQLPPGLPIIPDEFKPKLKLITRKPILPSDIELEENNRAR 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRIAEK 309 >gi|42783012|ref|NP_980259.1| S-adenosyl-methyltransferase MraW [Bacillus cereus ATCC 10987] gi|47565791|ref|ZP_00236830.1| S-adenosyl-methyltransferase MraW [Bacillus cereus G9241] gi|222097364|ref|YP_002531421.1| s-adenosyl-methyltransferase mraw [Bacillus cereus Q1] gi|228987063|ref|ZP_04147188.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229157497|ref|ZP_04285574.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus ATCC 4342] gi|88911698|sp|P62468|RSMH_BACC1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263447274|sp|B9IVZ5|RSMH_BACCQ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|42738939|gb|AAS42867.1| S-adenosyl-methyltransferase MraW [Bacillus cereus ATCC 10987] gi|47557071|gb|EAL15400.1| S-adenosyl-methyltransferase MraW [Bacillus cereus G9241] gi|221241422|gb|ACM14132.1| S-adenosyl-methyltransferase MraW [Bacillus cereus Q1] gi|228625947|gb|EEK82697.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus ATCC 4342] gi|228772657|gb|EEM21098.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|324327818|gb|ADY23078.1| 16S rRNA m(4)C1402 methyltranserfase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 310 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 113/309 (36%), Positives = 172/309 (55%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73 + +HV VLL++ + L+ PG +D T G GG+S G +IA D+D A+ Sbjct: 1 MFNHVTVLLKETVDGLDIKPGGTYVDCTLGGGGHSSYLLSQLTEGGRLIAFDQDEIAIQN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E Y EQF ++ F L + + + G VDG++FDLGVSS Q+D +RGFS+ Sbjct: 61 AKEKFSSYGEQFITVKSNFRYLSEKLQELGITEVDGILFDLGVSSPQLDTPERGFSYHHD 120 Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM ++A DVVN + + L RI GEEK + +IA I R++ +TT Sbjct: 121 APLDMRMDQDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTG 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L LI++ + ++ HPA R FQA+RI VN+E++ + L SA + +K GG + V+ Sbjct: 181 ELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRVSVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F S + I + + IT+K ++P+ ++ N R+R Sbjct: 241 TFHSLEDRICKTTFKRNSTTPQLPPGLPIIPDEFKPKLKLITRKPILPSDIELEENNRAR 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRIAEK 309 >gi|291484065|dbj|BAI85140.1| S-adenosyl-methyltransferase MraW [Bacillus subtilis subsp. natto BEST195] Length = 311 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 115/309 (37%), Positives = 171/309 (55%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H VLL + + LN P +D T G G+S + +IA D+D A+ Sbjct: 1 MFQHKTVLLRETVDGLNIKPDGTYVDCTLGGAGHSTYLLQQLSEKGRLIAFDQDDTALQH 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E + DYK Q L ++ F L++ + ++G VDG++FDLGVSS Q+D +RGFS+ Sbjct: 61 AKEVLSDYKGQLILIKSNFRYLKECLNEQGITEVDGILFDLGVSSPQLDTPERGFSYHHD 120 Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM S +SA +VVN+ +DL RI GEEK + +IA I + R +P QTT Sbjct: 121 APLDMRMDQSATLSAKEVVNEWRYEDLVRIFFKYGEEKFSKQIARKIEEARMKSPIQTTG 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L LI+ + ++ + HPA R FQA+RI VN+E+ + L A + LK GG + V+ Sbjct: 181 QLVDLIKDAIPAPARRSGGHPAKRVFQAIRIAVNDELRVFEEALEQAIEVLKPGGRVSVI 240 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F +S + + + IT+K + +QE++ N R+R Sbjct: 241 TFHSLEDRICKTTFKEKSSLPELPPGLPVIPEEFEPELKLITRKPITASQEELEENNRAR 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRIAEK 309 >gi|229092966|ref|ZP_04224098.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus Rock3-42] gi|228690420|gb|EEL44205.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus Rock3-42] Length = 310 Score = 401 bits (1032), Expect = e-110, Method: Composition-based stats. Identities = 112/309 (36%), Positives = 171/309 (55%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73 + +HV VLL++ + L+ P +D T G GG+S G +IA D+D A+ Sbjct: 1 MFNHVTVLLKETVDGLDIKPDGTYVDCTLGGGGHSSYLLSQLTEGGRLIAFDQDEIAIQN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E Y EQF ++ F L + + + G VDG++FDLGVSS Q+D +RGFS+ Sbjct: 61 AKEKFSSYGEQFITVKSNFRYLSEKLQELGITEVDGILFDLGVSSPQLDTPERGFSYHHD 120 Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM ++A DVVN + + L RI GEEK + +IA I R++ +TT Sbjct: 121 APLDMRMDQDAPLTAYDVVNNWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTG 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L LI++ + ++ HPA R FQA+RI VN+E++ + L SA + +K GG + V+ Sbjct: 181 ELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRVSVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F S + I + + IT+K ++P+ ++ N R+R Sbjct: 241 TFHSLEDRICKTTFKRNSTTPQLPPGLPIIPDEFKPKLKLITRKPILPSDIELEENNRAR 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRIAEK 309 >gi|206976726|ref|ZP_03237630.1| S-adenosyl-methyltransferase MraW [Bacillus cereus H3081.97] gi|217961340|ref|YP_002339908.1| S-adenosyl-methyltransferase MraW [Bacillus cereus AH187] gi|229140568|ref|ZP_04269123.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus BDRD-ST26] gi|229198030|ref|ZP_04324744.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus m1293] gi|263447288|sp|B7HM39|RSMH_BACC7 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|206745036|gb|EDZ56439.1| S-adenosyl-methyltransferase MraW [Bacillus cereus H3081.97] gi|217067703|gb|ACJ81953.1| S-adenosyl-methyltransferase MraW [Bacillus cereus AH187] gi|228585509|gb|EEK43613.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus m1293] gi|228643129|gb|EEK99405.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus BDRD-ST26] Length = 310 Score = 401 bits (1032), Expect = e-110, Method: Composition-based stats. Identities = 113/309 (36%), Positives = 172/309 (55%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73 + +HV VLL++ + L+ PG +D T G GG+S G +IA D+D A+ Sbjct: 1 MFNHVTVLLKETVDGLDIKPGGTYVDCTLGGGGHSSYLLSQLTEGGRLIAFDQDEIAIQN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E Y EQF ++ F L + + + G VDG++FDLGVSS Q+D +RGFS+ Sbjct: 61 AKEKFSSYGEQFITVRSNFRYLSEKLQELGITEVDGILFDLGVSSPQLDTPERGFSYHHD 120 Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM ++A DVVN + + L RI GEEK + +IA I R++ +TT Sbjct: 121 APLDMRMDQDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTG 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L LI++ + ++ HPA R FQA+RI VN+E++ + L SA + +K GG + V+ Sbjct: 181 ELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRVSVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F S + I + + IT+K ++P+ ++ N R+R Sbjct: 241 TFHSLEDRICKTTFKRNSTTPQLPPGLPIIPDEFKPKLKLITRKPILPSDIELEENNRAR 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRIAEK 309 >gi|153854700|ref|ZP_01995950.1| hypothetical protein DORLON_01948 [Dorea longicatena DSM 13814] gi|149752804|gb|EDM62735.1| hypothetical protein DORLON_01948 [Dorea longicatena DSM 13814] Length = 311 Score = 401 bits (1032), Expect = e-110, Method: Composition-based stats. Identities = 104/307 (33%), Positives = 171/307 (55%), Gaps = 9/307 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 +H VLL + I LN P + +D T G GG++ C+ +I +D+D A+ Sbjct: 4 EHKSVLLNETIEGLNIKPDGIYVDGTLGGGGHAYEVCRRLGEKGSIIGIDQDEAAIEAAS 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 ++D+ E+ ++ ++ + ++ + + G VDG+V DLGVSS Q+D +RGFS+++ P Sbjct: 64 VRLKDFGEKVTIIRSNYCDMKSKLHELGIDKVDGIVLDLGVSSYQLDTAERGFSYREDAP 123 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM ++A D+VN + DL R++ GE+K A IA IV R + P +TT L Sbjct: 124 LDMRMDRRQKMTARDIVNDYSEMDLYRVIRDYGEDKFAKNIAKHIVAARGTNPIETTGQL 183 Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 + +I+ ++ + HPA R+FQA+RI +N E++ L L + L GG L +++F Sbjct: 184 TEIIRASIPMKYQKKSGHPAKRTFQAIRIELNRELDVLKNSLDDMIEILNPGGRLCIITF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK F + + +T+K ++P++E++ +N RS+SA Sbjct: 244 HSLEDRIVKSAFKKNENPCTCPPDFPVCVCGKVSKGCVVTRKPILPSEEELEYNSRSKSA 303 Query: 310 KLRAGMR 316 KLR R Sbjct: 304 KLRIFER 310 >gi|49478448|ref|YP_037980.1| S-adenosyl-methyltransferase MraW [Bacillus thuringiensis serovar konkukian str. 97-27] gi|54036189|sp|Q6HEP6|RSMH_BACHK RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|49330004|gb|AAT60650.1| S-adenosyl-methyltransferase [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 310 Score = 401 bits (1032), Expect = e-110, Method: Composition-based stats. Identities = 112/309 (36%), Positives = 171/309 (55%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73 + +HV VLL++ + L+ P +D T G GG+S G +IA D+D A+ Sbjct: 1 MFNHVTVLLKETVDGLDIKPDGTYVDCTLGGGGHSSYLLSQLTEGGRLIAFDQDEIAIQN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E Y EQF ++ F L + + + G VDG++FDLGVSS Q+D +RGFS+ Sbjct: 61 AKEKFSSYGEQFITVKSNFRYLSEKLQELGITEVDGILFDLGVSSPQLDTPERGFSYHHD 120 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM ++A DVVN + + L RI GEEK + +IA I R++ +TT Sbjct: 121 APLDMRMDQDASLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTG 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L LI++ + ++ HPA R FQA+RI VN+E++ + L SA + +K GG + V+ Sbjct: 181 ELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRVSVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F S + I + + IT+K ++P+ ++ N R+R Sbjct: 241 TFHSLEDRICKTTFKRNSTTPQLPPGLPIIPDEFKPKLKLITRKPILPSDIELEENNRAR 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRIAEK 309 >gi|168186149|ref|ZP_02620784.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum C str. Eklund] gi|169295776|gb|EDS77909.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum C str. Eklund] Length = 309 Score = 401 bits (1032), Expect = e-110, Method: Composition-based stats. Identities = 111/307 (36%), Positives = 163/307 (53%), Gaps = 9/307 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 +HVPVLLE+ I LN + +D T G G+S K +I +D+D A+ + Sbjct: 4 NHVPVLLEETIDSLNIKKDGIYVDCTLGGAGHSSEILKKLSKKGRLIGIDQDINAIKAAK 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 ++ Y E + F L + + + VDG++ DLGVSS Q+D +RGFS+ Sbjct: 64 NRLKGY-ENITYVHNNFYNLAGILDELNVEKVDGILMDLGVSSYQLDTPERGFSYMNDAM 122 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ SGISA DVVN + DL RI+ GEE+ A +IA AIVK R P +TT L Sbjct: 123 LDMRMNTESGISAYDVVNGYSEDDLFRIIKNYGEERFARKIARAIVKERNEKPIETTLQL 182 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + HPA ++FQA+RI VN+E+E L + + L G + V++FH Sbjct: 183 VKIIRNVIPMKFQQGGHPAKKTFQAIRIEVNHELEILNKTVEDGVNYLNKDGRISVITFH 242 Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR++K F + I + + IT+K + P++ + N RSRS+K Sbjct: 243 SLEDRIIKTKFKELENPCTCPKEFPICVCGKKPIVKVITRKPIEPSEVERENNSRSRSSK 302 Query: 311 LRAGMRT 317 LR + Sbjct: 303 LRVAQKI 309 >gi|212639664|ref|YP_002316184.1| putative S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Anoxybacillus flavithermus WK1] gi|263446761|sp|B7GGJ0|RSMH_ANOFW RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|212561144|gb|ACJ34199.1| Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Anoxybacillus flavithermus WK1] Length = 313 Score = 401 bits (1032), Expect = e-110, Method: Composition-based stats. Identities = 113/317 (35%), Positives = 172/317 (54%), Gaps = 14/317 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M+S H HV VLL++ + LN +D T G G+S + A D Sbjct: 1 MTSLFH-----HVTVLLKETVDGLNIKKDGTYVDCTLGGAGHSEYLLSQLSPEGRLFAFD 55 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGD 122 +D A+ Q+ + Y+ QF++ ++ F L+ + GV DG++FDLGVSS Q+D + Sbjct: 56 QDDIAIRHAQQRLERYRGQFTIIKSNFRYLKQQLALYGVHEVDGILFDLGVSSPQLDMPE 115 Query: 123 RGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFS+Q PLDMRM ++A DVVN + L +I GEEK + IA I + R+ Sbjct: 116 RGFSYQHEAPLDMRMDREQTLTAYDVVNTWPYEQLVKIFFQYGEEKFSKAIARKIEQTRK 175 Query: 182 SAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 P +TT +L+ +I++ + ++ HPA R FQA+RI VN+E+ + + A LK Sbjct: 176 QKPIETTTELAEVIKEAIPAPARRTGGHPAKRVFQAIRIAVNDELRAFEEAIEQAIDLLK 235 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 GG + V++FHSLEDR+ K F S + I + + + ITKK +VP++E+ Sbjct: 236 PGGRISVITFHSLEDRICKIAFKQASETPHLPPGLPIIPDEYKPKLKIITKKPIVPSEEE 295 Query: 300 VAFNRRSRSAKLRAGMR 316 + N R+RSAKLR + Sbjct: 296 LQHNHRARSAKLRIAEK 312 >gi|261405657|ref|YP_003241898.1| S-adenosyl-methyltransferase MraW [Paenibacillus sp. Y412MC10] gi|261282120|gb|ACX64091.1| S-adenosyl-methyltransferase MraW [Paenibacillus sp. Y412MC10] Length = 317 Score = 401 bits (1032), Expect = e-110, Method: Composition-based stats. Identities = 112/316 (35%), Positives = 172/316 (54%), Gaps = 16/316 (5%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSC 73 + H+ VL ++ L P + +D T G G+S +IALD+D +A++ Sbjct: 1 MFHHITVLKQEATEGLRIKPDGIYVDCTLGGAGHSSLIASQLSSEGRLIALDQDDWALNN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVP---------DKGVDGVVFDLGVSSMQIDCGDRG 124 +E M+ Y ++ SL + F L++ + VDG++FDLGVSS Q D G+RG Sbjct: 61 AREAMKPYADRISLVKTNFRDLEEVLRREVGAGENGQPQVDGILFDLGVSSPQFDEGERG 120 Query: 125 FSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 FS+ PLDMRM S ++A+ +VN+ +++ RIL GEEK + RIA IV+RR + Sbjct: 121 FSYNHDAPLDMRMDQSAELTAAKIVNEWPEQEIARILYQYGEEKFSRRIAKVIVERRAQS 180 Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 P QTT +L +I++ + + + HPA RSFQA RI VN+E+ L A + L G Sbjct: 181 PIQTTGELVEMIKEGIPAAARRTGGHPAKRSFQAFRIAVNDELGAFEDALHQAVRCLAPG 240 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDV 300 G + V++FHSLEDR+ K+ F S K M + + +K ++P+ E++ Sbjct: 241 GRISVITFHSLEDRICKQIFNSYIPKCTCPPDFPMCVCGGGQGDLKLVNRKPLIPSAEEI 300 Query: 301 AFNRRSRSAKLRAGMR 316 N R+RSAKLR + Sbjct: 301 ESNPRARSAKLRIAEK 316 >gi|229162854|ref|ZP_04290811.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus R309803] gi|228620736|gb|EEK77605.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus R309803] Length = 310 Score = 401 bits (1031), Expect = e-110, Method: Composition-based stats. Identities = 113/309 (36%), Positives = 169/309 (54%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73 + HV VLL++ + L+ PG +D T G GG+S G +IA D+D A+ Sbjct: 1 MFKHVTVLLKETVDGLDIKPGGTYVDCTLGGGGHSSYLLSQLTDGGKLIAFDQDEIAIQN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E Y EQF ++ F L + + + G VDG++FDLGVSS Q+D +RGFS+ Sbjct: 61 AKEKFASYGEQFVTVKSNFRYLSEKLQELGIAEVDGILFDLGVSSPQLDTPERGFSYHHD 120 Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM ++A DVVN + + L RI GEEK + +IA I R++ +TT Sbjct: 121 APLDMRMDQDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTG 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L LI++ + ++ HPA R FQA+RI VN+E++ + L SA +K GG + V+ Sbjct: 181 ELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAISMVKPGGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F S + I + IT+K ++P+ ++ N R+R Sbjct: 241 TFHSLEDRICKTTFKRNSTTPQLPPGLPIIPEEFKPKLKLITRKPILPSDIELEENNRAR 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRIAEK 309 >gi|296331089|ref|ZP_06873563.1| S-adenosyl-methyltransferase MraW [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674244|ref|YP_003865916.1| S-adenosyl-dependent methyltransferase active on membrane-located substrates [Bacillus subtilis subsp. spizizenii str. W23] gi|296151733|gb|EFG92608.1| S-adenosyl-methyltransferase MraW [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412488|gb|ADM37607.1| S-adenosyl-dependent methyltransferase active on membrane-located substrates [Bacillus subtilis subsp. spizizenii str. W23] Length = 311 Score = 401 bits (1031), Expect = e-110, Method: Composition-based stats. Identities = 114/309 (36%), Positives = 171/309 (55%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H VLL + + LN P +D T G G+S + +IA D+D A+ Sbjct: 1 MFQHKTVLLRETVDGLNIKPDGTYVDCTLGGAGHSTYLLQQLSEKGRLIAFDQDDMALQH 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E + DYK Q L ++ F L++ + ++G VDG++FDLGVSS Q+D +RGFS+ Sbjct: 61 AKEALSDYKGQLILIKSNFRYLKECLKEQGITEVDGILFDLGVSSPQLDTPERGFSYHHD 120 Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM S ++A +VVN +DL RI GEEK + +IA I + R +P QTT Sbjct: 121 APLDMRMDQSATLTAKEVVNDWRYEDLVRIFFKYGEEKFSKQIARKIEEARIKSPIQTTG 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L LI+ + ++ + HPA R FQA+RI VN+E++ + L A + LK GG + V+ Sbjct: 181 QLVDLIKDAIPAPARRSGGHPAKRVFQAIRIAVNDELKVFEEALEQAIEVLKPGGRVSVI 240 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F +S + + + IT+K + +QE++ N R+R Sbjct: 241 TFHSLEDRICKSTFKEKSSLPELPPGLPVIPEEFEPELKLITRKPITASQEELEENNRAR 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRIAEK 309 >gi|154685933|ref|YP_001421094.1| S-adenosyl-methyltransferase MraW [Bacillus amyloliquefaciens FZB42] gi|263446791|sp|A7Z4D7|RSMH_BACA2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|154351784|gb|ABS73863.1| YlxA [Bacillus amyloliquefaciens FZB42] Length = 311 Score = 401 bits (1031), Expect = e-110, Method: Composition-based stats. Identities = 112/309 (36%), Positives = 173/309 (55%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H VLL + + LN P +D T G G+S + +IA D+D A+ Sbjct: 1 MFQHKTVLLRETVDGLNIKPDGTYVDCTLGGAGHSTYLLQQLSEKGRLIAFDQDDTALEN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 ++T+ +YK Q L ++ F L++ + + G VDG++FDLGVSS Q+D +RGFS+ Sbjct: 61 AKKTLSEYKGQLILVKSNFRYLKECLHEHGITSVDGILFDLGVSSPQLDTPERGFSYHHD 120 Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM S ++A +VVN+ +DL RI GEEK + +IA I + R+ +P QTT Sbjct: 121 APLDMRMDQSAALTAKEVVNEWRYEDLVRIFFKYGEEKFSKQIARKIEEAREKSPIQTTG 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L LI+ + ++ + HPA R FQA+RI VN+E++ + L A + LK GG + V+ Sbjct: 181 QLVDLIKDAIPAPARRSGGHPAKRVFQAIRIAVNDELQVFEEALLQAIEVLKPGGRVSVI 240 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F +S + + + IT+K + ++E++ N R+R Sbjct: 241 TFHSLEDRMCKMTFKEKSSLPELPPGLPVIPEEFEPELKLITRKPITASKEELEENNRAR 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRIAEK 309 >gi|30263920|ref|NP_846297.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. Ames] gi|47529351|ref|YP_020700.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. 'Ames Ancestor'] gi|52141570|ref|YP_085259.1| S-adenosyl-methyltransferase MraW [Bacillus cereus E33L] gi|65321245|ref|ZP_00394204.1| COG0275: Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Bacillus anthracis str. A2012] gi|118479138|ref|YP_896289.1| S-adenosyl-methyltransferase MraW [Bacillus thuringiensis str. Al Hakam] gi|165872265|ref|ZP_02216902.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0488] gi|167641107|ref|ZP_02399362.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0193] gi|170709248|ref|ZP_02899669.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0389] gi|177655554|ref|ZP_02936964.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0174] gi|190566055|ref|ZP_03018974.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis Tsiankovskii-I] gi|196035938|ref|ZP_03103340.1| S-adenosyl-methyltransferase MraW [Bacillus cereus W] gi|196038800|ref|ZP_03106108.1| S-adenosyl-methyltransferase MraW [Bacillus cereus NVH0597-99] gi|196045790|ref|ZP_03113019.1| S-adenosyl-methyltransferase MraW [Bacillus cereus 03BB108] gi|218905049|ref|YP_002452883.1| S-adenosyl-methyltransferase MraW [Bacillus cereus AH820] gi|225865900|ref|YP_002751278.1| S-adenosyl-methyltransferase MraW [Bacillus cereus 03BB102] gi|227813172|ref|YP_002813181.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. CDC 684] gi|228916556|ref|ZP_04080122.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228928967|ref|ZP_04091999.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935234|ref|ZP_04098060.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228947638|ref|ZP_04109928.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229123432|ref|ZP_04252636.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus 95/8201] gi|229186159|ref|ZP_04313328.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus BGSC 6E1] gi|229603937|ref|YP_002868154.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0248] gi|254721453|ref|ZP_05183242.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A1055] gi|254735959|ref|ZP_05193665.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. Western North America USA6153] gi|254754371|ref|ZP_05206406.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. Vollum] gi|254756738|ref|ZP_05208767.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. Australia 94] gi|301055409|ref|YP_003793620.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis CI] gi|33301354|sp|Q81WC3|RSMH_BACAN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|77416580|sp|Q636A8|RSMH_BACCZ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446803|sp|C3P688|RSMH_BACAA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446820|sp|C3L6F3|RSMH_BACAC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446828|sp|A0RHT9|RSMH_BACAH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446838|sp|B7JK06|RSMH_BACC0 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446859|sp|C1EPT2|RSMH_BACC3 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|30258564|gb|AAP27783.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. Ames] gi|47504499|gb|AAT33175.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. 'Ames Ancestor'] gi|51975039|gb|AAU16589.1| S-adenosyl-methyltransferase [Bacillus cereus E33L] gi|118418363|gb|ABK86782.1| S-adenosyl-methyltransferase [Bacillus thuringiensis str. Al Hakam] gi|164711941|gb|EDR17481.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0488] gi|167510887|gb|EDR86278.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0193] gi|170125855|gb|EDS94761.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0389] gi|172080083|gb|EDT65180.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0174] gi|190562974|gb|EDV16940.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis Tsiankovskii-I] gi|195991587|gb|EDX55553.1| S-adenosyl-methyltransferase MraW [Bacillus cereus W] gi|196023230|gb|EDX61908.1| S-adenosyl-methyltransferase MraW [Bacillus cereus 03BB108] gi|196030523|gb|EDX69122.1| S-adenosyl-methyltransferase MraW [Bacillus cereus NVH0597-99] gi|218537984|gb|ACK90382.1| S-adenosyl-methyltransferase MraW [Bacillus cereus AH820] gi|225790748|gb|ACO30965.1| S-adenosyl-methyltransferase MraW [Bacillus cereus 03BB102] gi|227005932|gb|ACP15675.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. CDC 684] gi|228597335|gb|EEK54986.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus BGSC 6E1] gi|228660208|gb|EEL15844.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus 95/8201] gi|228812158|gb|EEM58489.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228824399|gb|EEM70205.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830774|gb|EEM76379.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228843135|gb|EEM88217.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229268345|gb|ACQ49982.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0248] gi|300377578|gb|ADK06482.1| S-adenosyl-methyltransferase MraW [Bacillus cereus biovar anthracis str. CI] Length = 310 Score = 401 bits (1031), Expect = e-110, Method: Composition-based stats. Identities = 112/309 (36%), Positives = 171/309 (55%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73 + +HV VLL++ + L+ P +D T G GG+S G +IA D+D A+ Sbjct: 1 MFNHVTVLLKETVDGLDIKPDGTYVDCTLGGGGHSSYLLSQLTEGGRLIAFDQDEIAIQN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E Y EQF ++ F L + + + G VDG++FDLGVSS Q+D +RGFS+ Sbjct: 61 AKEKFSSYGEQFITVKSNFRYLSEKLQELGITEVDGILFDLGVSSPQLDTPERGFSYHHD 120 Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM ++A DVVN + + L RI GEEK + +IA I R++ +TT Sbjct: 121 APLDMRMDQDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTG 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L LI++ + ++ HPA R FQA+RI VN+E++ + L SA + +K GG + V+ Sbjct: 181 ELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRVSVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F S + I + + IT+K ++P+ ++ N R+R Sbjct: 241 TFHSLEDRICKTTFKRNSTTPQLPPGLPIIPDEFKPKLKLITRKPILPSDIELEENNRAR 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRIAEK 309 >gi|30022007|ref|NP_833638.1| S-adenosyl-methyltransferase MraW [Bacillus cereus ATCC 14579] gi|75762006|ref|ZP_00741921.1| S-adenosyl-methyltransferase mraW [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|206971097|ref|ZP_03232048.1| S-adenosyl-methyltransferase MraW [Bacillus cereus AH1134] gi|218899072|ref|YP_002447483.1| S-adenosyl-methyltransferase MraW [Bacillus cereus G9842] gi|228902424|ref|ZP_04066578.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis IBL 4222] gi|228909744|ref|ZP_04073567.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis IBL 200] gi|228922671|ref|ZP_04085971.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228941007|ref|ZP_04103565.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228954195|ref|ZP_04116223.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228960136|ref|ZP_04121800.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis serovar pakistani str. T13001] gi|228966872|ref|ZP_04127916.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis serovar sotto str. T04001] gi|228973938|ref|ZP_04134513.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980527|ref|ZP_04140837.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis Bt407] gi|229047603|ref|ZP_04193193.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus AH676] gi|229071418|ref|ZP_04204640.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus F65185] gi|229081171|ref|ZP_04213681.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus Rock4-2] gi|229111388|ref|ZP_04240941.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus Rock1-15] gi|229129196|ref|ZP_04258169.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus BDRD-Cer4] gi|229146490|ref|ZP_04274861.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus BDRD-ST24] gi|229152116|ref|ZP_04280311.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus m1550] gi|229180194|ref|ZP_04307538.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus 172560W] gi|229192088|ref|ZP_04319057.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus ATCC 10876] gi|296504412|ref|YP_003666112.1| S-adenosyl-methyltransferase MraW [Bacillus thuringiensis BMB171] gi|33301351|sp|Q819P8|RSMH_BACCR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446850|sp|B7IVF3|RSMH_BACC2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|29897563|gb|AAP10839.1| S-adenosyl-methyltransferase mraW [Bacillus cereus ATCC 14579] gi|74490508|gb|EAO53809.1| S-adenosyl-methyltransferase mraW [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|206733869|gb|EDZ51040.1| S-adenosyl-methyltransferase MraW [Bacillus cereus AH1134] gi|218540802|gb|ACK93196.1| S-adenosyl-methyltransferase MraW [Bacillus cereus G9842] gi|228591414|gb|EEK49264.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus ATCC 10876] gi|228603403|gb|EEK60880.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus 172560W] gi|228631465|gb|EEK88099.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus m1550] gi|228637123|gb|EEK93582.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus BDRD-ST24] gi|228654433|gb|EEL10298.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus BDRD-Cer4] gi|228672164|gb|EEL27455.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus Rock1-15] gi|228702215|gb|EEL54691.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus Rock4-2] gi|228711709|gb|EEL63662.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus F65185] gi|228723850|gb|EEL75205.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus AH676] gi|228779347|gb|EEM27604.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis Bt407] gi|228785804|gb|EEM33808.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228792971|gb|EEM40529.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis serovar sotto str. T04001] gi|228799652|gb|EEM46605.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis serovar pakistani str. T13001] gi|228805515|gb|EEM52106.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228818686|gb|EEM64753.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228837100|gb|EEM82441.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228850033|gb|EEM94864.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis IBL 200] gi|228857168|gb|EEN01674.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus thuringiensis IBL 4222] gi|296325464|gb|ADH08392.1| S-adenosyl-methyltransferase MraW [Bacillus thuringiensis BMB171] gi|326941688|gb|AEA17584.1| S-adenosyl-methyltransferase MraW [Bacillus thuringiensis serovar chinensis CT-43] Length = 310 Score = 401 bits (1030), Expect = e-109, Method: Composition-based stats. Identities = 112/309 (36%), Positives = 170/309 (55%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73 + HV VLL++ + L+ P +D T G GG+S G +IA D+D A+ Sbjct: 1 MFKHVTVLLKETVDGLDIKPDGTYVDCTLGGGGHSSYLLSQLTEGGKLIAFDQDEIAIQN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E Y EQF ++ F L + + + G VDG++FDLGVSS Q+D +RGFS+ Sbjct: 61 AKEKFSSYGEQFITVKSNFRYLAEKLQEIGITEVDGILFDLGVSSPQLDTPERGFSYHHD 120 Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM ++A DVVN + + L RI GEEK + +IA I R++ +TT Sbjct: 121 APLDMRMDQDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTG 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L LI++ + ++ HPA R FQA+RI VN+E++ + L SA + +K GG + V+ Sbjct: 181 ELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRVSVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F S + I + + IT+K ++P+ ++ N R+R Sbjct: 241 TFHSLEDRICKTTFKRNSTTPQLPPGLPIIPDEFKPKLKLITRKPILPSDIELEENNRAR 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRIAEK 309 >gi|226948790|ref|YP_002803881.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum A2 str. Kyoto] gi|263446084|sp|C1FME6|RSMH_CLOBJ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|226843346|gb|ACO86012.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum A2 str. Kyoto] Length = 309 Score = 401 bits (1030), Expect = e-109, Method: Composition-based stats. Identities = 113/307 (36%), Positives = 165/307 (53%), Gaps = 9/307 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 H+ VLLE+ I LN V +D T G GG+S+ K S+ +I +D+D A+ + Sbjct: 4 KHISVLLEETIDSLNIKEDGVYVDCTLGGGGHSKEILKKLSHKGKLIGIDQDTSAIKAAK 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E ++DY E F + + + VDG++ DLGVSS Q+D RGFS+ K P Sbjct: 64 ERLKDY-ENVIYVHNNFYNIDSILEELDIDKVDGIIMDLGVSSYQLDEASRGFSYMKDAP 122 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ +SA +VVN ++L +IL GEEK + +IA IV++R P +TT +L Sbjct: 123 LDMRMNREENLSAYNVVNSYEEEELFKILKNYGEEKFSRKIARFIVEKRTENPIETTGEL 182 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+K + HPA R+FQA+RI VN E++ L + + + L G L +++FH Sbjct: 183 VEIIRKAIPAKFQREGHPAKRTFQAIRIEVNKELQILNKAIEDSVNRLNKDGRLSIITFH 242 Query: 252 SLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK F I + ITKK + P++E+ N RSRSAK Sbjct: 243 SLEDRIVKVKFKELEKPCTCPPSFPICVCGKEPQIKIITKKPIEPSKEEKEINSRSRSAK 302 Query: 311 LRAGMRT 317 LR + Sbjct: 303 LRVCRKI 309 >gi|168180112|ref|ZP_02614776.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum NCTC 2916] gi|182668973|gb|EDT80949.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum NCTC 2916] Length = 309 Score = 400 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 113/307 (36%), Positives = 164/307 (53%), Gaps = 9/307 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 H+ VLLE+ I LN V +D T G GG+S+ K S+ +I +D+D A+ + Sbjct: 4 KHISVLLEETIDSLNIKEDGVYVDCTLGGGGHSKEILKKLSHKGKLIGIDQDTSAIKAAK 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E ++DY E F + + + VDG++ DLGVSS Q+D RGFS+ K P Sbjct: 64 ERLKDY-ENVIYVHNNFYNIDSILEELDIDKVDGIIMDLGVSSYQLDEASRGFSYMKDAP 122 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ SA +VVN ++L +IL GEEK + +IA IV++R P +TT +L Sbjct: 123 LDMRMNREENFSAYNVVNNYEEEELFKILKNYGEEKFSRKIARFIVEKRTENPIETTGEL 182 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+K + HPA R+FQA+RI VN E++ L + + + L G L +++FH Sbjct: 183 VEIIRKAIPAKFQREGHPAKRTFQAIRIEVNKELQILNKAIEDSVNRLNKDGRLSIITFH 242 Query: 252 SLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK F I + ITKK + P++E+ N RSRSAK Sbjct: 243 SLEDRIVKVKFKELEKPCTCPPSFPICVCGKEPQIKIITKKPIEPSKEEKEINSRSRSAK 302 Query: 311 LRAGMRT 317 LR + Sbjct: 303 LRVCRKI 309 >gi|325571379|ref|ZP_08146879.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Enterococcus casseliflavus ATCC 12755] gi|325155855|gb|EGC68051.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Enterococcus casseliflavus ATCC 12755] Length = 331 Score = 400 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 114/330 (34%), Positives = 175/330 (53%), Gaps = 17/330 (5%) Query: 1 MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-- 58 ++ K K M+ H V+L++ + L+ P V +D T G G+S Sbjct: 5 LDRKRKKHMAD------FQHYTVMLQETVDGLSIRPEGVYVDCTLGGAGHSEYLLSQLSE 58 Query: 59 -SNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLG 112 ++ A D+D A+ +E + Y K + ++ F L++ + GV DG+++DLG Sbjct: 59 EGHLFAFDQDQTAIDHAKERLAPYVAKGMVTFIKSNFRYLKEALNQHGVSRVDGILYDLG 118 Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASR 171 VSS Q+D +RGFS+ + PLDMRM + ++A +VVNQ + L +I GEEK + + Sbjct: 119 VSSPQLDEAERGFSYHQDAPLDMRMDQTAALTAYEVVNQFDYHQLVKIFFRYGEEKFSKQ 178 Query: 172 IAHAIVKRRQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQ 230 IA I + RQ P +TT +L +I+ + ++ HPA R FQA+RI VN+E+ + Sbjct: 179 IAREIERVRQDHPIETTGELVDIIKTAIPAPARRKGGHPAKRVFQAIRIAVNDELGVIED 238 Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSIT 289 L A L G + V++FHSLEDR+VK F S K M + + IT Sbjct: 239 SLEQAIHLLAVNGRVSVITFHSLEDRIVKSMFKEYSTPKDMPPGLPMIPEEFQPTLKLIT 298 Query: 290 KKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319 +K ++PT+E+VA N RSRSAKLR + E Sbjct: 299 RKPLLPTEEEVAENNRSRSAKLRIAEKIKE 328 >gi|307244139|ref|ZP_07526257.1| S-adenosyl-methyltransferase MraW [Peptostreptococcus stomatis DSM 17678] gi|306492510|gb|EFM64545.1| S-adenosyl-methyltransferase MraW [Peptostreptococcus stomatis DSM 17678] Length = 311 Score = 400 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 115/307 (37%), Positives = 176/307 (57%), Gaps = 9/307 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 +HV VLL + I LN P V +D T G G+SR K ++ D+D A++ + Sbjct: 4 NHVSVLLNECIENLNIKPDGVYVDCTMGGAGHSREIAKRLSDKGRLVCFDQDINAINVAK 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +++Y ++ L + F L++ + +G+ DGV+ DLGVSS Q+D DRGFS+ Sbjct: 64 DRLKEYNDRVVLVHSNFENLKEELESRGIFKIDGVLADLGVSSHQLDEADRGFSYMHDAR 123 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + +SA VVN+ + +DL I+ GEEK A RIA IVK R TT DL Sbjct: 124 LDMRMDDRASMSAWQVVNEYSQEDLYTIIKDYGEEKWAKRIAEFIVKERADHSIDTTFDL 183 Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+K + ++ + HPA R+FQA+RI VNNE+ + + +R A + GG + +++F Sbjct: 184 VDVIKKAIPKGARIDGPHPAKRTFQAIRIEVNNELGVINKMIRDAVSMMNKGGRICIITF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK F + + + + IT+K ++P++E+V FN RSRS+ Sbjct: 244 HSLEDRIVKNEFRDLNKDCICPPELPFCQCNKKSELKIITRKPILPSEEEVDFNPRSRSS 303 Query: 310 KLRAGMR 316 KLR G + Sbjct: 304 KLRVGEK 310 >gi|116253056|ref|YP_768894.1| S-adenosyl-methyltransferase MraW [Rhizobium leguminosarum bv. viciae 3841] gi|262825308|sp|Q1ME25|RSMH_RHIL3 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|115257704|emb|CAK08802.1| putative S-adenosyl-methyltransferase [Rhizobium leguminosarum bv. viciae 3841] Length = 341 Score = 400 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 177/323 (54%), Positives = 226/323 (69%), Gaps = 1/323 (0%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+PVLL++V+A L PAPGK ILD TFGAGGYS + G+ VIALDRDP A++ GQ + Sbjct: 19 HIPVLLDEVLAALAPAPGKFILDGTFGAGGYSSAILAAGAEVIALDRDPTAIAAGQAMVA 78 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 + + L + FS L D+ P G+DGVV D+GVSSMQID +RGFSFQK+GPLDMRMS Sbjct: 79 AHGGRLRLVHSQFSHLADHAPQGGLDGVVLDIGVSSMQIDEAERGFSFQKNGPLDMRMSA 138 Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199 G+SA+DVVN+A V DL RI LGEE QA RIAHAI KRR PF+TT+DL+ LI+ Sbjct: 139 EGVSAADVVNRAKVADLIRIFHFLGEESQAPRIAHAIEKRRAEKPFETTRDLAGLIELVT 198 Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259 ++IHPATR FQALRIFVN+E+ ELAQ L +AE ALK GG L+VV+FHSLEDR+VK Sbjct: 199 PRKMKDKIHPATRVFQALRIFVNDELGELAQALFAAETALKPGGRLVVVTFHSLEDRIVK 258 Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319 KFF+ R+GK RH+ ++ A F+++ K +V ++ + N R+RSAKLRAG+RT Sbjct: 259 KFFSDRAGKASGSRHLPVAHERAATFEAVGKPMVSASEAEAEINPRARSAKLRAGLRTYA 318 Query: 320 RS-IEDDSFVHLPRLPTLSQFRG 341 + D S P L +L + G Sbjct: 319 AAEAADMSLFGFPNLASLGKLGG 341 >gi|170759536|ref|YP_001786877.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum A3 str. Loch Maree] gi|263446098|sp|B1L164|RSMH_CLOBM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|169406525|gb|ACA54936.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum A3 str. Loch Maree] Length = 309 Score = 400 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 113/307 (36%), Positives = 163/307 (53%), Gaps = 9/307 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 H+ VLLE+ I LN V +D T G GG+S+ K S+ +I +D+D A+ + Sbjct: 4 KHISVLLEETIDSLNIKEDGVYVDCTLGGGGHSKEILKKLSHKGKLIGIDQDTSAIKAAK 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E ++DY E F + + + VDG++ DLGVSS Q+D RGFS+ K P Sbjct: 64 ERLKDY-ENVIYVHNNFYNIDSILEELDIDKVDGIIMDLGVSSYQLDEASRGFSYMKDAP 122 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ SA +VVN ++L RI GEEK + +IA IV++R P +TT +L Sbjct: 123 LDMRMNREENFSAYNVVNSYEEEELFRIFKNYGEEKFSRKIARFIVEKRTENPIETTGEL 182 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+K + HPA R+FQA+RI VN E++ L + + + L G L +++FH Sbjct: 183 VEIIRKAIPAKFQREGHPAKRTFQAIRIEVNKELQILNKAIEDSVNRLNKDGRLSIITFH 242 Query: 252 SLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK F I + ITKK + P++E+ N RSRSAK Sbjct: 243 SLEDRIVKVKFKELEKPCTCPPSFPICVCGKEPQIKIITKKPIEPSKEEKEINSRSRSAK 302 Query: 311 LRAGMRT 317 LR + Sbjct: 303 LRVCRKI 309 >gi|134298535|ref|YP_001112031.1| S-adenosyl-methyltransferase MraW [Desulfotomaculum reducens MI-1] gi|263446306|sp|A4J2A3|RSMH_DESRM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|134051235|gb|ABO49206.1| S-adenosyl-methyltransferase MraW [Desulfotomaculum reducens MI-1] Length = 313 Score = 400 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 112/307 (36%), Positives = 172/307 (56%), Gaps = 9/307 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 HV VLL + I L PG + +D T G G+S + ++ +D+DP A++ Sbjct: 4 KHVSVLLHESIDGLKIKPGGIYVDCTLGGAGHSLEILRRLGPEGKLVGIDQDPAAIANAA 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E ++++ QF Q F Q++ + + VDG++FDLGVSS Q+D +RGFS+ Sbjct: 64 EKLQEFPGQFHAVQRNFFQIKQILREMAISEVDGILFDLGVSSYQLDTPERGFSYMHDAE 123 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM ISA ++VN + ++L I+ GE++ A RIA IVK R+ TT +L Sbjct: 124 LDMRMGPDQTISAKELVNDISEEELATIIRRYGEDRWAKRIASFIVKERKKRAIHTTGEL 183 Query: 192 SSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+ V ++ HPA R+FQALRI VNNE+E L Q ++ A ALK+GG + V++F Sbjct: 184 VDIIKAAVPVGARREGPHPAKRTFQALRIAVNNELEILEQTMKDAVTALKSGGRISVITF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR++K F + + + + +T K + P++E++ N R+RSA Sbjct: 244 HSLEDRIIKDTFKELANPCTCPPAFPVCACGKQPQIKIVTGKPIQPSKEELEHNPRARSA 303 Query: 310 KLRAGMR 316 KLR + Sbjct: 304 KLRIAEK 310 >gi|152976280|ref|YP_001375797.1| S-adenosyl-methyltransferase MraW [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|263446007|sp|A7GRP4|RSMH_BACCN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|152025032|gb|ABS22802.1| S-adenosyl-methyltransferase MraW [Bacillus cytotoxicus NVH 391-98] Length = 310 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 111/309 (35%), Positives = 168/309 (54%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73 + HV VLLE+ + L+ P +D T G GG+S G +IA D+D A+ Sbjct: 1 MFKHVTVLLEETVDGLDIKPNGTYVDCTLGGGGHSSYLLSQLTEGGKLIAFDQDEIAIQN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 ++ Y EQF ++ F L + + + G VDG++FDLGVSS Q+D +RGFS+ Sbjct: 61 AKDKFSSYGEQFIAVKSNFRYLSEKLHELGITEVDGILFDLGVSSPQLDTPERGFSYHHD 120 Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM ++A DVVN + + L RI GEEK + +IA I R+ +TT Sbjct: 121 APLDMRMDQEAPLTAYDVVNNWSYEQLVRIFFQYGEEKFSKQIARKIEAYREKKKIETTG 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L LI++ + ++ HPA R FQA+RI VN+E++ + L +A + +K GG + V+ Sbjct: 181 ELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALEAAIEIVKPGGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F S + I + IT+K ++P+ ++ N R+R Sbjct: 241 TFHSLEDRICKTTFKRNSTTPELPPGLPIIPEEFKPKLKLITRKPILPSDVELEENNRAR 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRIAEK 309 >gi|192292422|ref|YP_001993027.1| S-adenosyl-methyltransferase MraW [Rhodopseudomonas palustris TIE-1] gi|262825558|sp|B3QFN9|RSMH_RHOPT RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|192286171|gb|ACF02552.1| S-adenosyl-methyltransferase MraW [Rhodopseudomonas palustris TIE-1] Length = 332 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 151/332 (45%), Positives = 199/332 (59%), Gaps = 8/332 (2%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAV 71 + + H+PVL + + LL P G + +D TFGAGGY+R + GS VIA+DRDP A+ Sbjct: 1 MKPSDTRHIPVLGPEAVGLLAPRAGGIYVDGTFGAGGYTRLILETAGSRVIAIDRDPTAI 60 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQ 128 + G + + D + +L Q FS L D +G VDGVV D+GVSSMQ+D +RGFSF+ Sbjct: 61 AGGADLVADAGHRLTLVQDRFSNLADVCAAQGAATVDGVVMDIGVSSMQLDQAERGFSFR 120 Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM G SA+DVV +A+ DL I+ I GEE+ + +A AIV R AP TT Sbjct: 121 FDGPLDMRMGRDGPSAADVVARASETDLANIIYIFGEERYSRHVARAIVAARSDAPITTT 180 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 + L+ ++ K V +K IHPATR+FQ LRIFVN E++EL Q L +AE+ LK GG L VV Sbjct: 181 KALADIVAKVV-RAKPGEIHPATRTFQGLRIFVNEELDELHQALDAAERVLKPGGRLAVV 239 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDR+VK F RS RH+ F ++K+ +V +VA N R+RS Sbjct: 240 SFHSLEDRIVKTFLTERSKTGGGSRHLPEVAQAAPSFTLLSKRPIVAGDAEVAANPRARS 299 Query: 309 AKLRAGMRTVERSIEDDSFVHLPRLPTLSQFR 340 AKLR RT + LP PTL+ Sbjct: 300 AKLRGAERTEAPAHAAGD---LPGWPTLASVM 328 >gi|169827004|ref|YP_001697162.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Lysinibacillus sphaericus C3-41] gi|263456365|sp|B1HPY0|RSMH_LYSSC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|168991492|gb|ACA39032.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Lysinibacillus sphaericus C3-41] Length = 316 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 111/316 (35%), Positives = 170/316 (53%), Gaps = 9/316 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSC 73 + DH VLL++ + LN P V +D T G G+S +I D+D A+ Sbjct: 1 MFDHTTVLLKETVDGLNIDPDGVYVDCTLGGAGHSEYLVQQLSDKGRLICFDQDMTAIEN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + Y E+ + + F L++ + G VDG+++DLGVSS Q+D +RGFS+ Sbjct: 61 AKIRLAPYIERVTFIHSNFRYLKEELLAHGFEQVDGILYDLGVSSPQLDTPERGFSYHHD 120 Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM + ++A +VVNQ +DL RI GEEK + ++A I + R+SAP +TT Sbjct: 121 APLDMRMDQTATLTAFEVVNQWAYEDLVRIFFRYGEEKFSKQVARKIEEARKSAPIETTG 180 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L LI++ + + + HPA R FQA+RI VN+E+ L A + GG + V+ Sbjct: 181 QLVELIKEGIPAAARRKGGHPAKRIFQAIRIAVNDELGAAEDSLVDAIDMINVGGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K F S + + + + IT+K +VP+ E++ N R+R Sbjct: 241 TFHSLEDRLCKTIFKEASSLPELPPNLPVIPDDMKPTLKLITRKPIVPSDEELEVNNRAR 300 Query: 308 SAKLRAGMRTVERSIE 323 SAKLR + ++ E Sbjct: 301 SAKLRVVEKINDKGRE 316 >gi|299534665|ref|ZP_07047997.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Lysinibacillus fusiformis ZC1] gi|298730038|gb|EFI70581.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Lysinibacillus fusiformis ZC1] Length = 316 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 112/316 (35%), Positives = 171/316 (54%), Gaps = 9/316 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSC 73 + DH VLL++ + LN P V +D T G G+S +I D+D A+ Sbjct: 1 MFDHTTVLLKETVDGLNIDPDGVYVDCTLGGAGHSEYLVQQLSDKGRLICFDQDMTAIEN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + Y E+ + + F L++ + G VDG+++DLGVSS Q+D +RGFS+ Sbjct: 61 AKIRLAPYIERVTFIHSNFRYLKEELLAHGIKQVDGILYDLGVSSPQLDTPERGFSYHHD 120 Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM + ++ASDVVNQ +DL RI GEEK + ++A I + R+ AP +TT Sbjct: 121 APLDMRMDQTATLTASDVVNQWAYEDLVRIFFRYGEEKFSKQVARKIEEARKIAPIETTG 180 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L LI++ + + + HPA R FQA+RI VN+E+ L A + GG + V+ Sbjct: 181 QLVELIKEGIPAAARRKGGHPAKRIFQAIRIAVNDELGAAEDSLVDAIDMINVGGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K F S + + + + IT+K ++P+ E++A N R+R Sbjct: 241 TFHSLEDRLCKTIFKEASSLPELPPNLPVIPDDMKPTLKLITRKPIIPSDEELAVNNRAR 300 Query: 308 SAKLRAGMRTVERSIE 323 SAKLR + ++ E Sbjct: 301 SAKLRVVEKINDKGRE 316 >gi|316933178|ref|YP_004108160.1| S-adenosyl-methyltransferase MraW [Rhodopseudomonas palustris DX-1] gi|315600892|gb|ADU43427.1| S-adenosyl-methyltransferase MraW [Rhodopseudomonas palustris DX-1] Length = 332 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 153/331 (46%), Positives = 197/331 (59%), Gaps = 8/331 (2%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAV 71 + H+ HVPVL + + LL P G V +D TFGAGGY+R + GS VIA+DRDP A+ Sbjct: 1 MSHSDSRHVPVLGPEAVGLLAPRDGGVYVDGTFGAGGYTRLILQTAGSRVIAIDRDPTAI 60 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQ 128 G + + + +L Q FS L D +G VDGVV D+GVSSMQ+D +RGFSF+ Sbjct: 61 VGGAGLVAEAGGRLTLVQDRFSNLADVCAAQGAATVDGVVIDIGVSSMQLDQAERGFSFR 120 Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM G SA+DVV +A+ DL I+ I GEE+ + +A AIV R P TT Sbjct: 121 FDGPLDMRMGRDGPSAADVVARASETDLANIIYIFGEERYSRHVARAIVAARSETPITTT 180 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 + L+ ++ K V +K IHPATR+FQ LRIFVN E++EL Q L +AE+ LK GG L VV Sbjct: 181 KALADIVAKVV-RAKPGEIHPATRTFQGLRIFVNEELDELHQALDAAERVLKPGGRLAVV 239 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDR+VK F A RS RH+ F + K+ +V +VA N R+RS Sbjct: 240 SFHSLEDRIVKTFLAERSKTGGGSRHLPEVAQAAPSFTLLAKRPIVAGDAEVAANPRARS 299 Query: 309 AKLRAGMRTVERSIEDDSFVHLPRLPTLSQF 339 AKLR RT + LP PTL+ Sbjct: 300 AKLRGAERTEAPAHAAGD---LPGWPTLASV 327 >gi|229117415|ref|ZP_04246791.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus Rock1-3] gi|228666025|gb|EEL21491.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus Rock1-3] Length = 310 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 111/309 (35%), Positives = 170/309 (55%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73 + HV VLL++ + L+ P +D T G GG+S G +IA D+D A+ Sbjct: 1 MFKHVTVLLKETVDGLDIKPDGTYVDCTLGGGGHSSYLLSQLTDGGKLIAFDQDEIAIQN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E Y EQF ++ F L + + + G VDG++FDLGVSS Q+D +RGFS+ Sbjct: 61 AKEKFSSYGEQFITVKSNFRYLSEKLQELGITEVDGILFDLGVSSPQLDTPERGFSYHHD 120 Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM ++A DV+N + + L RI GEEK + +IA I R++ +TT Sbjct: 121 APLDMRMDQDAPLTAYDVINSWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTG 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L LI++ + ++ HPA R FQA+RI VN+E++ + L SA + +K GG + V+ Sbjct: 181 ELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIELVKPGGRVSVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F S + I + + IT+K ++P+ ++ N R+R Sbjct: 241 TFHSLEDRICKTTFKRNSTTPQLPPGLPIIPDEFKPKLKLITRKPILPSDIELEENNRAR 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRIAEK 309 >gi|148379426|ref|YP_001253967.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum A str. ATCC 3502] gi|153932097|ref|YP_001383805.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum A str. ATCC 19397] gi|153935599|ref|YP_001387355.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum A str. Hall] gi|263446050|sp|A7FTX8|RSMH_CLOB1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446073|sp|A5I1T3|RSMH_CLOBH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|148288910|emb|CAL82997.1| S-adenosyl-methyltransferase [Clostridium botulinum A str. ATCC 3502] gi|152928141|gb|ABS33641.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum A str. ATCC 19397] gi|152931513|gb|ABS37012.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum A str. Hall] Length = 309 Score = 399 bits (1027), Expect = e-109, Method: Composition-based stats. Identities = 112/307 (36%), Positives = 164/307 (53%), Gaps = 9/307 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 H+ VLLE+ I LN V +D T G GG+S+ K S+ +I +D+D A+ + Sbjct: 4 KHISVLLEETIDSLNIKEDGVYVDCTLGGGGHSKEILKKLSHKGKLIGIDQDTSAIKAAK 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E ++DY E F + + + VDG++ DLGVSS Q+D RGFS+ K P Sbjct: 64 ERLKDY-ENVIYVHNNFYNIDSILEELDIDKVDGIIMDLGVSSYQLDEASRGFSYMKDAP 122 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ +SA V+N ++L +IL GEEK + +IA IV++R P +TT +L Sbjct: 123 LDMRMNREENLSAYGVINNYEEEELFKILKNYGEEKFSRKIARFIVEKRTENPIETTGEL 182 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+K + HPA R+FQA+RI VN E++ L + + + L G L +++FH Sbjct: 183 VEIIRKAIPAKFQREGHPAKRTFQAIRIEVNKELQILNKAIEDSVNRLNKDGRLSIITFH 242 Query: 252 SLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK F I + ITKK + P++E+ N RSRSAK Sbjct: 243 SLEDRIVKVKFKELEKPCTCPPSFPICVCGKEPQIKIITKKPIEPSKEEKEINSRSRSAK 302 Query: 311 LRAGMRT 317 LR + Sbjct: 303 LRVCRKI 309 >gi|150390647|ref|YP_001320696.1| S-adenosyl-methyltransferase MraW [Alkaliphilus metalliredigens QYMF] gi|263433264|sp|A6TS69|RSMH1_ALKMQ RecName: Full=Ribosomal RNA small subunit methyltransferase H 1; AltName: Full=16S rRNA m(4)C1402 methyltransferase 1; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH 1 gi|149950509|gb|ABR49037.1| S-adenosyl-methyltransferase MraW [Alkaliphilus metalliredigens QYMF] Length = 311 Score = 399 bits (1027), Expect = e-109, Method: Composition-based stats. Identities = 111/308 (36%), Positives = 174/308 (56%), Gaps = 9/308 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 +H VLL++ I L+ + +D T G G+S+ K+ +I +D+D A+S Sbjct: 4 EHTSVLLKECIEALDIKENGIYVDGTLGGAGHSQEILKVLGKEGLLIGIDQDENALSAAG 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + ++ + L F L + + +DGV+ DLGVSS Q+D +RGFS+ + P Sbjct: 64 ERLEEHGTKVKLVHDNFHNLDKILENLEITTIDGVLLDLGVSSHQLDERERGFSYMQDAP 123 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM SG SA D+VN + K+L RI+ GE++ A RIA IV+ R+ AP +TT + Sbjct: 124 LDMRMDRRSGFSARDIVNDYSEKELERIIKEYGEDRWARRIAQFIVQERELAPIETTHQM 183 Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+K V ++ + HPA R+FQA+RI VN E+E + + +A K +K GG + ++SF Sbjct: 184 VEVIKKAVPKGARKDGPHPAKRTFQAIRIEVNQELEIIEATIEAAAKHMKPGGRIAIISF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK F + + + + +T+K ++P++ ++ N RSRSA Sbjct: 244 HSLEDRIVKNVFRRLQNPCVCPPQFPVCKCEKEQMVKIVTRKPILPSEAELEVNPRSRSA 303 Query: 310 KLRAGMRT 317 KLR R Sbjct: 304 KLRVAERV 311 >gi|229174585|ref|ZP_04302115.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus MM3] gi|228608890|gb|EEK66182.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus MM3] Length = 310 Score = 399 bits (1027), Expect = e-109, Method: Composition-based stats. Identities = 111/309 (35%), Positives = 168/309 (54%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73 + HV VLL++ + L+ P +D T G GG+S G +IA D+D A+ Sbjct: 1 MFKHVTVLLKETVDGLDIKPDGTYVDCTLGGGGHSSYLLSQLTEGGRLIAFDQDEIAIQN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E Y EQF ++ F L + + + G VDG++FDLGVSS Q+D +RGFS+ Sbjct: 61 AKEKFSSYGEQFITVKSNFRYLSEKLQELGITEVDGILFDLGVSSPQLDTPERGFSYHHD 120 Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM ++A DVVN + + L RI GEEK + +I I R++ +TT Sbjct: 121 APLDMRMDQDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIVRKIEAYRENKAIETTG 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L LI++ + ++ HPA R FQA+RI VN+E++ + L SA +K GG + V+ Sbjct: 181 ELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIDMVKPGGRVSVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F S + I + + IT+K ++P+ ++ N R+R Sbjct: 241 TFHSLEDRICKTTFKRNSTTPQLPPGLPIIPDEFKPKLKLITRKPILPSDIELEENNRAR 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRIAEK 309 >gi|302874623|ref|YP_003843256.1| S-adenosyl-methyltransferase MraW [Clostridium cellulovorans 743B] gi|307690766|ref|ZP_07633212.1| S-adenosyl-methyltransferase MraW [Clostridium cellulovorans 743B] gi|302577480|gb|ADL51492.1| S-adenosyl-methyltransferase MraW [Clostridium cellulovorans 743B] Length = 311 Score = 399 bits (1027), Expect = e-109, Method: Composition-based stats. Identities = 106/308 (34%), Positives = 163/308 (52%), Gaps = 10/308 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 HV VLLE+ I L+ P + +D T G G+S K +I +D+D A++ + Sbjct: 4 KHVSVLLEECIEGLSIKPDGIYVDCTLGGAGHSFEIVKQLTSEGRLIGIDQDTNAINAAK 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E ++DY + F + + + + VDG++ DLGVSS Q+D +RGFS+ K P Sbjct: 64 EKLKDY-NNVTYVHDNFHNIGEILENLNIDKVDGILMDLGVSSHQLDVAERGFSYMKDAP 122 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ SA D+VN + + L +I+ GEEK A RIA IVK R +TT L Sbjct: 123 LDMRMNQERDFSAYDIVNTYSEEQLFKIIRDYGEEKFAKRIASFIVKNRNEKTIETTFQL 182 Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+ + + HPA R+FQA+RI VN E+E L + + L G + +++F Sbjct: 183 VEIIKNAIPAKARREGPHPAKRTFQAIRIEVNKELEILDKAINDGIDKLALDGRICIITF 242 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK + ++ + I + I++K + + E++ +N RSRSA Sbjct: 243 HSLEDRIVKNIYKEQANPCTCPKEFPICICNRKPKVKIISRKPIEASAEELEYNPRSRSA 302 Query: 310 KLRAGMRT 317 KLR + Sbjct: 303 KLRVAEKI 310 >gi|168182383|ref|ZP_02617047.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum Bf] gi|237794792|ref|YP_002862344.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum Ba4 str. 657] gi|263446362|sp|C3KV90|RSMH_CLOB6 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|182674378|gb|EDT86339.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum Bf] gi|229262949|gb|ACQ53982.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum Ba4 str. 657] Length = 309 Score = 399 bits (1027), Expect = e-109, Method: Composition-based stats. Identities = 112/307 (36%), Positives = 164/307 (53%), Gaps = 9/307 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 H+ VLLE+ I LN V +D T G GG+S+ K S+ +I +D+D A+ + Sbjct: 4 KHISVLLEETIDSLNIKEDGVYVDCTLGGGGHSKEILKKLSHKGKLIGIDQDTSAIKAAK 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E ++DY E F + + + VDG++ DLGVSS Q+D RGFS+ K P Sbjct: 64 ERLKDY-ENVIYVHNNFYNIDSILEELDIDKVDGIIMDLGVSSYQLDEASRGFSYMKDAP 122 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ +SA V+N ++L +IL GEEK + +IA IV++R P +TT +L Sbjct: 123 LDMRMNREENLSAYGVINNYKEEELFKILKNYGEEKFSRKIARFIVEKRTENPIETTGEL 182 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+K + HPA R+FQA+RI VN E++ L + + + L G L +++FH Sbjct: 183 VEIIRKAIPAKFQREGHPAKRTFQAIRIEVNKELQILNKAIEDSVNRLNKDGRLSIITFH 242 Query: 252 SLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK F I + ITKK + P++E+ N RSRSAK Sbjct: 243 SLEDRIVKVKFKELEKPCTCPPSFPICVCGKEPQIKIITKKPIEPSKEEKEINSRSRSAK 302 Query: 311 LRAGMRT 317 LR + Sbjct: 303 LRVCRKI 309 >gi|49186768|ref|YP_030020.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. Sterne] gi|49180695|gb|AAT56071.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. Sterne] Length = 310 Score = 399 bits (1027), Expect = e-109, Method: Composition-based stats. Identities = 111/309 (35%), Positives = 170/309 (55%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73 + +HV VLL++ + L+ P +D T G GG+S G +IA D+D A+ Sbjct: 1 MFNHVTVLLKETVDGLDIKPDGTYVDCTLGGGGHSSYLLSQLTEGGRLIAFDQDEIAIQN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E Y EQF ++ F L + + + G VDG++FDLGVSS Q+D +RGFS+ Sbjct: 61 AKEKFSSYGEQFITVKSNFRYLSEKLQELGITEVDGILFDLGVSSPQLDTPERGFSYHHD 120 Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM ++A D VN + + L RI GEEK + +IA I R++ +TT Sbjct: 121 APLDMRMDQDAPLTAYDAVNSWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTG 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L LI++ + ++ HPA R FQA+RI VN+E++ + L SA + +K GG + V+ Sbjct: 181 ELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRVSVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F S + I + + IT+K ++P+ ++ N R+R Sbjct: 241 TFHSLEDRICKTTFKRNSTTPQLPPGLPIIPDEFKPKLKLITRKPILPSDIELEENNRAR 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRIAEK 309 >gi|229075675|ref|ZP_04208657.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus Rock4-18] gi|229098389|ref|ZP_04229334.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus Rock3-29] gi|228685006|gb|EEL38939.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus Rock3-29] gi|228707451|gb|EEL59642.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus Rock4-18] Length = 310 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 111/309 (35%), Positives = 170/309 (55%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73 + HV VLL++ + L+ P +D T G GG+S G +IA D+D A+ Sbjct: 1 MFKHVTVLLKETVDGLDIKPDGTYVDCTLGGGGHSSYLLSQLTDGGKLIAFDQDEIAIQN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E Y EQF ++ F L + + + G VDG++FDLGVSS Q+D +RGFS+ Sbjct: 61 AKEKFSSYGEQFITVKSNFRYLSEKLQELGITEVDGILFDLGVSSPQLDTPERGFSYHHD 120 Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM ++A DV+N + + L RI GEEK + +IA I R++ +TT Sbjct: 121 APLDMRMDQDAPLTAYDVINSWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTG 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L LI++ + ++ HPA R FQA+RI VN+E++ + L SA + +K GG + V+ Sbjct: 181 ELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRVSVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F S + I + + IT+K ++P+ ++ N R+R Sbjct: 241 TFHSLEDRICKTTFKRNSTTPQLPPGLPIIPDEFKPKLKLITRKPILPSDIELEENNRAR 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRIAEK 309 >gi|190892591|ref|YP_001979133.1| S-adenosyl-methyltransferase [Rhizobium etli CIAT 652] gi|262825238|sp|B3PTW8|RSMH_RHIE6 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|190697870|gb|ACE91955.1| S-adenosyl-methyltransferase protein [Rhizobium etli CIAT 652] Length = 341 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 174/323 (53%), Positives = 224/323 (69%), Gaps = 1/323 (0%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+PVLLE+V+A L PAPGK+ILD TFGAGGY+ + G+ VIALDRDP A++ GQ + Sbjct: 19 HIPVLLEEVLAALAPAPGKLILDGTFGAGGYTSAILAAGAEVIALDRDPTAIAAGQAMVA 78 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 + + L + FS L D+ P G+DGVV D+GVSSMQ+D +RGFSFQK+GPLDMRMS Sbjct: 79 AHGGRLKLVHSQFSHLADHAPQGGLDGVVLDIGVSSMQLDEAERGFSFQKNGPLDMRMSA 138 Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199 +G+SA+DV+N+A V DL RI LGEE QA RIAHAI KRR PF+TT+DL+ LI+ Sbjct: 139 TGVSAADVLNRAKVADLIRIFHFLGEESQAPRIAHAIEKRRAEKPFETTRDLAGLIELVT 198 Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259 ++IHPATR FQALRIFVN+E+ ELAQ L +AE LK GG L+VV+FHSLEDR+VK Sbjct: 199 PRKMKDKIHPATRVFQALRIFVNDELGELAQALFAAETVLKPGGRLVVVTFHSLEDRIVK 258 Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT-V 318 KFF+ R+GK RH+ ++ A F ++ K +V ++ + N R+RSAKLRAG RT Sbjct: 259 KFFSDRAGKASGSRHLPAAHERAATFTAVGKSMVSASEAEAESNPRARSAKLRAGQRTAA 318 Query: 319 ERSIEDDSFVHLPRLPTLSQFRG 341 D S P L +L + G Sbjct: 319 AAEAADMSLFGFPNLASLGKLGG 341 >gi|315646023|ref|ZP_07899144.1| S-adenosyl-methyltransferase MraW [Paenibacillus vortex V453] gi|315278784|gb|EFU42098.1| S-adenosyl-methyltransferase MraW [Paenibacillus vortex V453] Length = 317 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 110/316 (34%), Positives = 170/316 (53%), Gaps = 16/316 (5%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSC 73 + H+ VL ++ L P + +D T G G+S +IALD+D +A++ Sbjct: 1 MFHHITVLKQEATEGLRIKPDGIYVDCTLGGAGHSSLIASQLSSNGRLIALDQDDWALNN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVP---------DKGVDGVVFDLGVSSMQIDCGDRG 124 +E M+ Y ++ +L + F L++ + VDG++FDLGVSS Q D G+RG Sbjct: 61 AREVMKPYVDRITLVKTNFRDLEEVLRIEVGVDENGQPQVDGILFDLGVSSPQFDEGERG 120 Query: 125 FSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 FS+ PLDMRM S ++A+ +VN+ +++ RIL GEEK + RIA IV+RR Sbjct: 121 FSYNHDAPLDMRMDQSAELTAAKIVNEWPEQEIARILYEYGEEKFSRRIAKVIVERRVQG 180 Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 P TT +L +I++ + + + HPA RSFQA RI VN+E+ L A + L G Sbjct: 181 PIHTTGELVEMIKEGIPAAARRTGGHPAKRSFQAFRIAVNDELGAFKDALHQAVRCLAPG 240 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDV 300 G + V++FHSLEDR+ K+ F S K M + + +K ++P+ E++ Sbjct: 241 GRVSVITFHSLEDRICKQIFNSYIPKCTCPPDFPMCVCGGGQGDLKLVNRKPLIPSVEEI 300 Query: 301 AFNRRSRSAKLRAGMR 316 N R+RSAKLR + Sbjct: 301 ESNPRARSAKLRIAEK 316 >gi|257867494|ref|ZP_05647147.1| methyltransferase [Enterococcus casseliflavus EC30] gi|257873823|ref|ZP_05653476.1| methyltransferase [Enterococcus casseliflavus EC10] gi|257877573|ref|ZP_05657226.1| methyltransferase [Enterococcus casseliflavus EC20] gi|257801550|gb|EEV30480.1| methyltransferase [Enterococcus casseliflavus EC30] gi|257807987|gb|EEV36809.1| methyltransferase [Enterococcus casseliflavus EC10] gi|257811739|gb|EEV40559.1| methyltransferase [Enterococcus casseliflavus EC20] Length = 319 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 111/311 (35%), Positives = 169/311 (54%), Gaps = 11/311 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H V+L++ + L P V +D T G G+S ++ A D+D A+ +E Sbjct: 6 HYTVMLQETVDGLKIRPEGVYVDCTLGGAGHSEYLLSQLSEEGHLFAFDQDQTAIDHAKE 65 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y K + ++ F L++ + GV DG+++DLGVSS Q+D +RGFS+ + Sbjct: 66 RLAPYVAKGMVTFIKSNFRYLKEALHQHGVSRVDGILYDLGVSSPQLDEAERGFSYHQDA 125 Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + ++A +VVNQ + L +I GEEK + +IA I + RQ P +TT + Sbjct: 126 PLDMRMDQTAALTAYEVVNQFDYHQLVKIFFRYGEEKFSKQIAREIERVRQDHPIETTGE 185 Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I+ + ++ HPA R FQA+RI VN+E+ + + L A L G + V++ Sbjct: 186 LVDIIKTAIPAPARRKGGHPAKRVFQAIRIAVNDELGVIEESLEQAIHLLAVNGRVSVIT 245 Query: 250 FHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK F S K M + + IT+K ++PT+E+VA N RSRS Sbjct: 246 FHSLEDRIVKSMFKEYSTPKDMPPGLPMIPEEFQPTLKLITRKPLLPTEEEVAENNRSRS 305 Query: 309 AKLRAGMRTVE 319 AKLR + E Sbjct: 306 AKLRIAEKIKE 316 >gi|167040640|ref|YP_001663625.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter sp. X514] gi|256752962|ref|ZP_05493788.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter ethanolicus CCSD1] gi|300914681|ref|ZP_07131997.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter sp. X561] gi|307724085|ref|YP_003903836.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter sp. X513] gi|262825863|sp|B0K3H8|RSMH_THEPX RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|166854880|gb|ABY93289.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter sp. X514] gi|256748157|gb|EEU61235.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter ethanolicus CCSD1] gi|300889616|gb|EFK84762.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter sp. X561] gi|307581146|gb|ADN54545.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter sp. X513] Length = 308 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 113/304 (37%), Positives = 171/304 (56%), Gaps = 8/304 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77 H VLL++ I LN P + +D T G GG+S K +IA+DRD A+ +E Sbjct: 5 HKSVLLKETIEYLNIKPEGIYVDGTLGGGGHSEEILKRLTTGKLIAIDRDLDAIKASKER 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 +++YK F +++ + VDG++ DLGVSS Q++ RGFS+ K P+D Sbjct: 65 LKNYK-NVEYINDNFKNIKEILKSLNIDKVDGILLDLGVSSYQLEEVKRGFSYMKDAPMD 123 Query: 135 MRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM + SA DVVN+ + ++L R++ GEEK ASRIA IVK R+ +TT L Sbjct: 124 MRMDKNSPFSAYDVVNKYSQQELERVIREYGEEKWASRIAKFIVKEREKGEIKTTFQLVE 183 Query: 194 LIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ + ++ HPA R+FQA+RI VN E++ L + + + L+ G + +++FHS Sbjct: 184 IIKNAIPASARREGPHPAKRTFQAIRIEVNEELKGLDKAIEDMVEVLRGKGRIAIITFHS 243 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK F +M + V + ITKK V+P++E++ N RSRSAKLR Sbjct: 244 LEDRIVKNTFKKLENPCTCPPNMPCTCGKKPVVKIITKKPVLPSKEEIETNSRSRSAKLR 303 Query: 313 AGMR 316 + Sbjct: 304 VAEK 307 >gi|289423186|ref|ZP_06425001.1| S-adenosyl-methyltransferase MraW [Peptostreptococcus anaerobius 653-L] gi|289156517|gb|EFD05167.1| S-adenosyl-methyltransferase MraW [Peptostreptococcus anaerobius 653-L] Length = 311 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 108/307 (35%), Positives = 172/307 (56%), Gaps = 9/307 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 HV VLL++ I LN P +D T G G+S+ K +I D+D A++ + Sbjct: 4 KHVSVLLDECIDNLNINPDGTYVDCTMGGAGHSKEIAKRLGENGRLICFDQDINAINVAK 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + ++K++ L + F +++ + ++ +D GV+ DLGVSS Q+D RGFS+ Sbjct: 64 ERLAEFKDRVILVHSNFENIKEELLERNIDSIDGVLADLGVSSHQLDEAFRGFSYMNDAS 123 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + +SA DVVN + +DL RI+ GEE ASRIA IV+ R+ TT +L Sbjct: 124 LDMRMDDRNSMSAWDVVNTYSQEDLHRIIKDYGEENWASRIAQFIVEERKEKDINTTFEL 183 Query: 192 SSLIQKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+K + + HPA R+FQA+RI VNNE+ + + + + + GG + +++F Sbjct: 184 VDIIKKAIPKKARIDGPHPAKRTFQAIRIEVNNELGVIKKMIDDSVSMMNPGGRICIITF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK + S + S + + IT+K ++P+++++ N RSRSA Sbjct: 244 HSLEDRIVKNEYKYLSLDCICPPELPFCSCDKVSEVKIITRKPILPSKQEIEVNPRSRSA 303 Query: 310 KLRAGMR 316 KLR + Sbjct: 304 KLRVAEK 310 >gi|257888481|ref|ZP_05668134.1| methyltransferase [Enterococcus faecium 1,141,733] gi|257824535|gb|EEV51467.1| methyltransferase [Enterococcus faecium 1,141,733] Length = 319 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 107/313 (34%), Positives = 172/313 (54%), Gaps = 10/313 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H V+L++ + LN P V +D T G G+S ++ A D+D A+ Sbjct: 3 ETFQHYTVMLKETVDGLNIKPDGVYVDCTLGGAGHSEYLLSQLSSKGHLYAFDQDQKAID 62 Query: 73 CGQETMRDYKEQ--FSLFQATFSQLQDYVPDK--GVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + + Y EQ + +A F +L++ + + VDG+++DLGVSS Q+D +RGFS+ Sbjct: 63 HAKLRLASYVEQGMVTFIKANFRELEERLSEYVDKVDGILYDLGVSSPQLDEAERGFSYH 122 Query: 129 KSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + PLDMRM S ++A V+N+ +L +I GEEK + +IA I + R++ P QT Sbjct: 123 QDAPLDMRMDQSAPLTAYHVINEYPYHELVKIFFRYGEEKFSKQIAREIERVRKTKPIQT 182 Query: 188 TQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T +L +I++ + ++ HPA R FQA+RI VN+E+ L A + LK G + Sbjct: 183 TGELVEIIKQVIPAPARRKGGHPAKRIFQAVRIAVNDELGAEETSLEQAIRLLKVNGRIS 242 Query: 247 VVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V++FHSLEDR+VK F S + + + + + IT+K ++P++E++A N R Sbjct: 243 VITFHSLEDRIVKSMFKEYSTVQDLPPGLPVIPDEFQPELKVITRKPILPSEEELAENNR 302 Query: 306 SRSAKLRAGMRTV 318 SRSAKLR + Sbjct: 303 SRSAKLRIAEKIR 315 >gi|229031550|ref|ZP_04187550.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus AH1271] gi|228729839|gb|EEL80819.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus AH1271] Length = 310 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 113/309 (36%), Positives = 171/309 (55%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73 + HV VLL++ + L+ PG +D T G GG+S G +IA D+D A+ Sbjct: 1 MFKHVTVLLKETVDGLDIKPGGTYVDCTLGGGGHSSYLLSQLTEGGKLIAFDQDEIAIQN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E Y EQF ++ F L + + + G VDG++FDLGVSS Q+D +RGFS+ Sbjct: 61 AKEKFSSYGEQFITVKSNFRYLSEKLQELGITEVDGILFDLGVSSPQLDTPERGFSYHHD 120 Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM ++A DVVN + + L RI GEEK + +IA I R++ +TT Sbjct: 121 APLDMRMDQDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTA 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L LI++ + ++ HPA R FQA+RI VN+E++ + L SA + +K GG + V+ Sbjct: 181 ELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRVSVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F S + I + + IT+K ++P+ ++ N R+R Sbjct: 241 TFHSLEDRICKTTFKRNSTTPQLPQGLPIIPDEFKPKLKLITRKPILPSDIELEENNRAR 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRIAEK 309 >gi|218133493|ref|ZP_03462297.1| hypothetical protein BACPEC_01360 [Bacteroides pectinophilus ATCC 43243] gi|217990868|gb|EEC56874.1| hypothetical protein BACPEC_01360 [Bacteroides pectinophilus ATCC 43243] Length = 312 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 102/307 (33%), Positives = 170/307 (55%), Gaps = 9/307 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 H VLL++ I LN P + +D T G GG+S K G +I +D+D A+ + Sbjct: 4 KHKSVLLDETIESLNIKPNGIYVDGTLGGGGHSYEIAKRLTDGGRLIGIDQDEDAIRAAK 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + ++ ++ ++ + + + + + GV DG++ D+GVSS Q+D +RGF++++ P Sbjct: 64 ERLSEFADRVTIVRDNYCNMPKVLDELGVSKVDGILLDIGVSSYQLDEAERGFTYKQDAP 123 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM ++A D+VN + +DL RI+ GE+K A IA IV+ RQ P +TT +L Sbjct: 124 LDMRMDQRQEMTAKDIVNGYSEEDLYRIIRDYGEDKFAKNIAKHIVQARQIKPVETTFEL 183 Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+ + + HPA ++FQA+RI +N E+E L + + + L G L +++F Sbjct: 184 DEIIKAAIPMKFRATGGHPAKKTFQAIRIELNRELEVLDESIDAMTDLLNDNGRLCIITF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK F + + IT+K +VP +E++ N+R++S+ Sbjct: 244 HSLEDRIVKTRFRKNENPCTCPPDFPVCVCGKKPKGKVITRKPIVPDEEELEENKRAKSS 303 Query: 310 KLRAGMR 316 KLR R Sbjct: 304 KLRVFER 310 >gi|257899142|ref|ZP_05678795.1| methyltransferase [Enterococcus faecium Com15] gi|293571737|ref|ZP_06682756.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium E980] gi|257837054|gb|EEV62128.1| methyltransferase [Enterococcus faecium Com15] gi|291608194|gb|EFF37497.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium E980] Length = 319 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 107/313 (34%), Positives = 173/313 (55%), Gaps = 10/313 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H V+L++ + LN P V +D T G G+S ++ A D+D A+ Sbjct: 3 ETFQHYTVMLKETVDGLNIKPDGVYVDCTLGGAGHSEYLLSQLSSKGHLYAFDQDQKAID 62 Query: 73 CGQETMRDYKEQ--FSLFQATFSQLQDYVPDK--GVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + + Y EQ + +A F +L++ + + VDG+++DLGVSS Q+D +RGFS+ Sbjct: 63 HAKLRLASYVEQGMVTFIKANFRELEERLSEYVDKVDGILYDLGVSSPQLDEAERGFSYH 122 Query: 129 KSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + PLDMRM S ++A V+N+ + +L +I GEEK + +IA I + R++ P QT Sbjct: 123 QDAPLDMRMDQSAPLTAYHVINEYSYHELVKIFFRYGEEKFSKQIAREIERVRKTKPIQT 182 Query: 188 TQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T +L +I++ + ++ HPA R FQA+RI VN+E+ L A + LK G + Sbjct: 183 TGELVEIIKQVIPAPARRKGGHPAKRIFQAVRIAVNDELGAEEASLEQAIRLLKVNGRIS 242 Query: 247 VVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V++FHSLEDR+VK F S + + + + + IT+K ++P++E++A N R Sbjct: 243 VITFHSLEDRIVKSMFKEYSTVQDLPPGLPVIPDEFQPELKVITRKPILPSEEELAENNR 302 Query: 306 SRSAKLRAGMRTV 318 SRSAKLR + Sbjct: 303 SRSAKLRIAEKIR 315 >gi|226323690|ref|ZP_03799208.1| hypothetical protein COPCOM_01465 [Coprococcus comes ATCC 27758] gi|225207874|gb|EEG90228.1| hypothetical protein COPCOM_01465 [Coprococcus comes ATCC 27758] Length = 311 Score = 398 bits (1024), Expect = e-109, Method: Composition-based stats. Identities = 109/308 (35%), Positives = 168/308 (54%), Gaps = 9/308 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H VLL++ I LN P + +D T G GG++ C+ + I +D+D A+ Sbjct: 4 KHKSVLLDETIEGLNIKPDGIYVDGTLGGGGHAYEVCRRLNNKGSFIGIDQDAAAIEAAG 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + D+ E+ ++ ++ + ++ + +KG VDG+V DLGVSS Q+D DRGFS++ P Sbjct: 64 TRLSDFGERVTIIRSNYCDMKSRLHEKGIDKVDGIVLDLGVSSYQLDTADRGFSYRVDAP 123 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM +SA ++VN + DL RI+ GE+K A IA IV R+ P +TT L Sbjct: 124 LDMRMDTRQTLSAKEIVNGYSEMDLFRIIRDYGEDKFAKNIAKHIVMAREKGPIETTGQL 183 Query: 192 SSLIQKTVYFSKNN-RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 + +I++++ HPA R+FQA+RI N E+E L L L GG + +++F Sbjct: 184 AEIIRQSIPMKFQKMSGHPAKRTFQAIRIECNRELEVLRDSLDDMIDILNPGGRICIITF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK F + + + ITKK ++P++E++ N RS+SA Sbjct: 244 HSLEDRIVKGIFKKNENPCTCPSTFPVCVCGKVSKGKVITKKPILPSEEEMEVNSRSKSA 303 Query: 310 KLRAGMRT 317 KLR R Sbjct: 304 KLRIFERV 311 >gi|323706128|ref|ZP_08117697.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacterium xylanolyticum LX-11] gi|323534572|gb|EGB24354.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacterium xylanolyticum LX-11] Length = 310 Score = 398 bits (1024), Expect = e-109, Method: Composition-based stats. Identities = 104/305 (34%), Positives = 163/305 (53%), Gaps = 8/305 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76 H VLL++ I L P + +D T G GG+S + +IA+DRD A+ Sbjct: 4 KHESVLLQETIEYLEIKPDGIYVDGTLGGGGHSYEILRRLDKGKLIAIDRDMDAIKAASI 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++D+ + + ++D + G+ DG + DLGVSS Q+D RGFS+ PL Sbjct: 64 RLKDF-NNTTYIHDNYKNIKDILKKCGIESIDGALLDLGVSSYQLDEAQRGFSYMHDAPL 122 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S I+A VVN + ++ +++ GEE A RIA IV+ R+ P +TT +L Sbjct: 123 DMRMDKESDITAEYVVNNYSEDEIAKVISDYGEELWAKRIAKFIVEERRRKPIKTTFELV 182 Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+K + + HPA R+FQA+RI VN E++ L + + GG + +++FH Sbjct: 183 DIIKKAIPASKRRTGPHPAKRTFQAIRIEVNEELKGLGDAIADFVDVMNPGGRIAIITFH 242 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+VK + +++ + V + ITKK +VP++ ++ N RSRSAKL Sbjct: 243 SLEDRIVKNAYKKLEDPCTCPKNLPCTCGKKPVIKIITKKPIVPSEVEIKVNPRSRSAKL 302 Query: 312 RAGMR 316 R + Sbjct: 303 RVAEK 307 >gi|210608682|ref|ZP_03287959.1| hypothetical protein CLONEX_00138 [Clostridium nexile DSM 1787] gi|210152939|gb|EEA83945.1| hypothetical protein CLONEX_00138 [Clostridium nexile DSM 1787] Length = 311 Score = 398 bits (1024), Expect = e-109, Method: Composition-based stats. Identities = 108/310 (34%), Positives = 172/310 (55%), Gaps = 9/310 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + +H VLLE+ + LN P + +D T G GG++ CK I +D+D A+ Sbjct: 2 VFEHKSVLLEETVNGLNIKPDGIYVDGTLGGGGHAYEVCKHLNNKGRFIGIDQDEAAIEA 61 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + D+ E+ ++ ++ + ++ + + G VDG+V DLGVSS Q+D +RGFS++ Sbjct: 62 AGSRLIDFGERVTIVRSNYCDMKSKLQELGIDKVDGIVLDLGVSSYQLDTAERGFSYRVD 121 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM ++A D+VN+ + DL RI+ GE+K A IA IV R+ P +TT Sbjct: 122 APLDMRMDRRQKMTAKDIVNEYSEMDLFRIIRDYGEDKFAKNIAKHIVLEREKGPIETTG 181 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L +I++ + + HPA R+FQA+RI +N E+E L + L + L G + ++ Sbjct: 182 QLIEIIKRAIPMKFQKTAGHPAKRTFQAIRIELNRELEVLRESLDDMIELLNKDGRICII 241 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+VK F H + + + + IT+K ++P+ E++ N RS+ Sbjct: 242 TFHSLEDRIVKGIFRKNENPCTCPPHFPVCVCGNESKGRVITRKPILPSAEELEENSRSK 301 Query: 308 SAKLRAGMRT 317 SAKLR RT Sbjct: 302 SAKLRIFERT 311 >gi|317501224|ref|ZP_07959429.1| S-adenosyl-L-methionine-dependent methyltransferase mraW 2 [Lachnospiraceae bacterium 8_1_57FAA] gi|331090030|ref|ZP_08338919.1| ribosomal RNA small subunit methyltransferase H 2 [Lachnospiraceae bacterium 3_1_46FAA] gi|316897400|gb|EFV19466.1| S-adenosyl-L-methionine-dependent methyltransferase mraW 2 [Lachnospiraceae bacterium 8_1_57FAA] gi|330402492|gb|EGG82061.1| ribosomal RNA small subunit methyltransferase H 2 [Lachnospiraceae bacterium 3_1_46FAA] Length = 311 Score = 398 bits (1024), Expect = e-109, Method: Composition-based stats. Identities = 104/307 (33%), Positives = 172/307 (56%), Gaps = 9/307 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 +HV VLL + + LN P V +DAT G GG++ C+ I +D+D A+ Sbjct: 4 EHVSVLLNETVDGLNVKPDGVYVDATLGGGGHAYEVCRRLGSKGRFIGIDQDADAIKAAG 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E ++ + E+ ++ ++ + ++ + + GVD G+V DLGVSS Q+D +RGFS++ P Sbjct: 64 ERLKGFGEKVTIIRSNYRDMKPQLQNIGVDKVDGIVIDLGVSSYQLDTAERGFSYRVDAP 123 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM ++A D+VN+ + +L R++ GE+K A IA IV+ R+ P +TT L Sbjct: 124 LDMRMDQRQKMTARDIVNEYSESELYRVIRDYGEDKFAKNIAKHIVEERRKNPIETTGQL 183 Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 + +I + + HP+ R+FQA+RI +N+E++ L + L + L GG + +++F Sbjct: 184 NEIISHAIPMKFRKTSGHPSKRTFQAIRIELNHELDVLRESLDDMIEMLNPGGRICIITF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK F H + + + IT+K ++P++ + N RS+SA Sbjct: 244 HSLEDRIVKSAFRKNENPCTCPSHFPVCVCGKISKGKVITRKPILPSEAETESNSRSKSA 303 Query: 310 KLRAGMR 316 KLR R Sbjct: 304 KLRIFER 310 >gi|52080116|ref|YP_078907.1| S-adenosyl-methyltransferase MraW [Bacillus licheniformis ATCC 14580] gi|52785490|ref|YP_091319.1| S-adenosyl-methyltransferase MraW [Bacillus licheniformis ATCC 14580] gi|319646109|ref|ZP_08000339.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus sp. BT1B_CT2] gi|59799852|sp|Q65JY8|RSMH_BACLD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|52003327|gb|AAU23269.1| putative methyltransferase [Bacillus licheniformis ATCC 14580] gi|52347992|gb|AAU40626.1| YlxA [Bacillus licheniformis ATCC 14580] gi|317391859|gb|EFV72656.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus sp. BT1B_CT2] Length = 312 Score = 398 bits (1024), Expect = e-109, Method: Composition-based stats. Identities = 113/313 (36%), Positives = 173/313 (55%), Gaps = 11/313 (3%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + +H VLL++ + LN +D T G G+S ++A D+D A+ Sbjct: 1 MFEHTTVLLKETVDGLNVKEDGTYVDCTLGGAGHSEYLLSQLSEKGKLVAFDQDETALRH 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E + DY+ Q ++ F L+D + + G VDGV+FDLGVSS Q+D +RGFS+ Sbjct: 61 AKEKLADYEGQVVFIKSNFRYLKDRLNEIGITKVDGVLFDLGVSSPQLDTPERGFSYHHD 120 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM S G+SA +VVN+ +DL +I GEEK + +IA I K R+ +P +TT Sbjct: 121 APLDMRMDQSAGLSAKEVVNEWPYEDLVKIFFKYGEEKFSKQIARKIEKAREQSPIETTG 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L +I++ + ++ + HPA R FQA+RI VN+E+ + L A + LK GG + V+ Sbjct: 181 QLVDIIKEAIPAPARRSGGHPAKRIFQAIRIAVNDELRVFEEALLQAIEVLKPGGRVSVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAV--RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 +FHSLEDR+ K F S +IP P + + +K + ++E++ N R+ Sbjct: 241 TFHSLEDRICKSTFKDMSSPPELPHGLPVIPKEFEPK-LKLVNRKPITASEEELEHNNRA 299 Query: 307 RSAKLRAGMRTVE 319 RSAKLR + E Sbjct: 300 RSAKLRIAEKARE 312 >gi|153938691|ref|YP_001390802.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum F str. Langeland] gi|263446093|sp|A7GDE2|RSMH_CLOBL RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|152934587|gb|ABS40085.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum F str. Langeland] gi|295318872|gb|ADF99249.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum F str. 230613] Length = 309 Score = 398 bits (1024), Expect = e-109, Method: Composition-based stats. Identities = 113/307 (36%), Positives = 164/307 (53%), Gaps = 9/307 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 H+ VLLE+ I LN V +D T G GG+S+ K S+ +I +D+D A+ + Sbjct: 4 KHISVLLEETIDSLNIKEDGVYVDCTLGGGGHSKEILKKLSHKGKLIGIDQDTSAIKAAK 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E ++DY E F + + + VDG++ DLGVSS Q+D RGFS+ K P Sbjct: 64 EKLKDY-ENIIYVHNNFYNIDSILEELDIDKVDGIIMDLGVSSYQLDEASRGFSYMKDAP 122 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ SA +VVN ++L +IL GEEK + +IA IV++R P +TT +L Sbjct: 123 LDMRMNREENFSAYNVVNSYEEEELFKILKNYGEEKFSRKIARFIVEKRTENPIETTGEL 182 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+K + HPA R+FQA+RI VN E++ L + + + L G L +++FH Sbjct: 183 VEIIRKAIPAKFQREGHPAKRTFQAIRIEVNKELQILNKAIEDSVNRLNKDGRLSIITFH 242 Query: 252 SLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK F I + ITKK + P++E+ N RSRSAK Sbjct: 243 SLEDRIVKVKFKELEKPCTCPPSFPICVCGKEPQIKIITKKPIEPSKEEKEINSRSRSAK 302 Query: 311 LRAGMRT 317 LR + Sbjct: 303 LRVCRKI 309 >gi|170755383|ref|YP_001781092.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum B1 str. Okra] gi|263446089|sp|B1IKR0|RSMH_CLOBK RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|169120595|gb|ACA44431.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum B1 str. Okra] Length = 309 Score = 398 bits (1024), Expect = e-109, Method: Composition-based stats. Identities = 112/307 (36%), Positives = 164/307 (53%), Gaps = 9/307 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 H+ VLLE+ I LN V +D T G GG+S+ K S+ +I +D+D A+ + Sbjct: 4 KHISVLLEETIDSLNIKEDGVYVDCTLGGGGHSKEILKKLSHKGKLIGIDQDTSAIKAAK 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E ++DY E F + + + VDG++ DLGVSS Q+D RGFS+ K P Sbjct: 64 EKLKDY-ENIIYVHNNFYNIDSILEELDIDKVDGIIMDLGVSSYQLDEASRGFSYMKDAP 122 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ +SA V+N ++L +IL GEEK + +IA IV++R P +TT +L Sbjct: 123 LDMRMNREENLSAYGVINNYEEEELFKILKNYGEEKFSRKIARFIVEKRTENPIETTGEL 182 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+K + HPA R+FQA+RI VN E++ L + + + L G L +++FH Sbjct: 183 VEIIRKAIPAKFQREGHPAKRTFQAIRIEVNKELQILNKAIEDSVNRLNKDGRLSIITFH 242 Query: 252 SLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK F I + ITKK + P++E+ N RSRSAK Sbjct: 243 SLEDRIVKVKFKELEKPCTCPPSFPICVCGKEPQIKIITKKPIEPSKEEKEINSRSRSAK 302 Query: 311 LRAGMRT 317 LR + Sbjct: 303 LRVCRKI 309 >gi|304404001|ref|ZP_07385663.1| S-adenosyl-methyltransferase MraW [Paenibacillus curdlanolyticus YK9] gi|304346979|gb|EFM12811.1| S-adenosyl-methyltransferase MraW [Paenibacillus curdlanolyticus YK9] Length = 317 Score = 398 bits (1023), Expect = e-109, Method: Composition-based stats. Identities = 111/316 (35%), Positives = 169/316 (53%), Gaps = 16/316 (5%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73 + HV VL+E+ I L P + +D T G G+S G +IA D+D +A Sbjct: 1 MFQHVTVLMEEAIDGLAVKPDGIYVDCTLGGAGHSSGIVSRLGGGGRLIAFDQDDWAHDN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDK----------GVDGVVFDLGVSSMQIDCGDR 123 + + ++ +L ++ F L+ + + VDG++FDLGVSS Q+D +R Sbjct: 61 ARIRLASSMDKVTLIKSNFRYLEQRLLECEGVPQKDGIPQVDGILFDLGVSSPQLDEAER 120 Query: 124 GFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GFS+ PLDMRM ++A D+VN + +D+ RIL GEEK A +IA I R + Sbjct: 121 GFSYNHDAPLDMRMDRDIALTAGDIVNTWDERDIARILMEYGEEKFARKIAREIGAARAN 180 Query: 183 APFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 AP +TT +L LI+ + + + HPA R+FQALRI VN+E++ L A + LK Sbjct: 181 APIETTGELVELIKAGIPAAARRTGGHPAKRTFQALRIAVNDELDAEEDALEQAIRCLKP 240 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDV 300 GG V++FHSLEDR+ K+ FA K + + + +K +VP++E++ Sbjct: 241 GGRASVITFHSLEDRICKQTFAKYLEKCSCPPDFPLCVCGGQGALKLVNRKPIVPSEEEL 300 Query: 301 AFNRRSRSAKLRAGMR 316 N R+RSAKLR + Sbjct: 301 EANPRARSAKLRVAEK 316 >gi|319938119|ref|ZP_08012517.1| S-adenosyl-methyltransferase mraW [Coprobacillus sp. 29_1] gi|319806640|gb|EFW03289.1| S-adenosyl-methyltransferase mraW [Coprobacillus sp. 29_1] Length = 315 Score = 398 bits (1023), Expect = e-109, Method: Composition-based stats. Identities = 106/311 (34%), Positives = 168/311 (54%), Gaps = 8/311 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74 + +H+ VLLE+ I LN + +D T G GG+S+ K ++ D+D A+ Sbjct: 1 MFNHISVLLEETIEGLNIKEDGIYVDCTLGGGGHSQEILKRLTTGHLYCFDQDQVAIEVA 60 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + + F++ + F ++ + GV DG+VFDLGVSS Q D G+RGFS+ Sbjct: 61 AKRLSQISDHFTIIYSNFKNMKSELNQLGVQKVDGIVFDLGVSSPQFDDGERGFSYNYDA 120 Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM + +SA ++VN +L +I +EK + +IA AI + RQ P +TT + Sbjct: 121 KLDMRMDRNQTLSAYEIVNTYEFNELVKIFYKYADEKFSKQIARAIERHRQEKPIETTFE 180 Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I++ + ++ HPA R+FQALRI VN+E+ + L + + GG + V++ Sbjct: 181 LVEIIKEAIPAPARRKGGHPAKRTFQALRIAVNDELSVFEKALDDSLDCICVGGRIAVIT 240 Query: 250 FHSLEDRLVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLED++ K F + + + + I FQ ITKK +V ++++ N RS S Sbjct: 241 FHSLEDKICKYTFNEVTKQPQLPMGMPIVPEYLKPRFQKITKKPIVAGEKELEENHRSHS 300 Query: 309 AKLRAGMRTVE 319 AKLR R E Sbjct: 301 AKLRIIERVYE 311 >gi|311068034|ref|YP_003972957.1| S-adenosyl-methyltransferase MraW [Bacillus atrophaeus 1942] gi|310868551|gb|ADP32026.1| S-adenosyl-methyltransferase MraW [Bacillus atrophaeus 1942] Length = 311 Score = 398 bits (1022), Expect = e-109, Method: Composition-based stats. Identities = 112/309 (36%), Positives = 170/309 (55%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H VLL + + L+ P +D T G G+S + +IA D+D A+ Sbjct: 1 MFQHKTVLLRETVDGLDIKPDGTYVDCTLGGAGHSTYLLQQLSEKGRLIAFDQDDTALQH 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E + YK Q L ++ F L+D + ++G+ DGV+FDLGVSS Q+D +RGFS+ Sbjct: 61 AKEKLSGYKGQLILIKSNFRYLKDCLNEQGITEIDGVLFDLGVSSPQLDTPERGFSYHHD 120 Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM S ++A +VVN+ +DL RI GEEK + +IA I + R +P QTT Sbjct: 121 APLDMRMDQSAPLTAKEVVNEWRYEDLVRIFFRYGEEKFSKQIARKIEEARSKSPIQTTG 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L LI+ + ++ + HPA R FQA+RI VN+E++ + L A + LK GG + V+ Sbjct: 181 QLVDLIKDAIPAPARRSGGHPAKRVFQAIRIAVNDELKVFEEALLQAIEVLKPGGRVSVI 240 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F S + + + IT+K + ++E++ N R+R Sbjct: 241 TFHSLEDRICKATFKEMSSLPELPPGLPVIPEEFEPELKLITRKPITASEEELEENNRAR 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRIAEK 309 >gi|197302579|ref|ZP_03167634.1| hypothetical protein RUMLAC_01308 [Ruminococcus lactaris ATCC 29176] gi|197298477|gb|EDY33022.1| hypothetical protein RUMLAC_01308 [Ruminococcus lactaris ATCC 29176] Length = 326 Score = 398 bits (1022), Expect = e-109, Method: Composition-based stats. Identities = 101/307 (32%), Positives = 170/307 (55%), Gaps = 9/307 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 +H+ VLL + + LN P + +DAT G GG++ C +I +D+D A+ Sbjct: 19 EHISVLLYETVDGLNVKPDGIYVDATLGGGGHAYEVCSRLGSQGRLIGIDQDADAIRAAG 78 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + + E+ ++ ++ + ++ + G VDG+ DLGVSS Q+D +RGFS++ P Sbjct: 79 KRLECFGEKVTIVRSNYCDMKQQLQKLGIDKVDGITVDLGVSSYQLDTAERGFSYRVDAP 138 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM ++A D++N + +L R++ GE++ A IA IV R+ AP +TT L Sbjct: 139 LDMRMDQRQKMTARDIINDYSESELYRVIRDYGEDRFAKNIAKHIVAERKKAPIETTGQL 198 Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 + +I + + HP+ R+FQA+RI +N+E++ L L + L GG L +++F Sbjct: 199 NEIISHAIPMKVRKTSGHPSKRTFQAIRIELNHELDVLRDTLDDMIELLNPGGRLCIITF 258 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK F H + + + + IT+K ++P++E++ N RS+SA Sbjct: 259 HSLEDRIVKSSFRKNENPCTCPSHFPVCVCGNVSKGKVITRKPILPSEEELEVNSRSKSA 318 Query: 310 KLRAGMR 316 KLR R Sbjct: 319 KLRIFER 325 >gi|15895401|ref|NP_348750.1| S-adenosyl-methyltransferase MraW [Clostridium acetobutylicum ATCC 824] gi|20139082|sp|Q97H81|RSMH_CLOAB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|15025123|gb|AAK80090.1|AE007714_3 Predicted S-adenosylmethionine-dependent methyltransferase, involved in cell envelope biogenesis YLXA B.subtilis ortholog [Clostridium acetobutylicum ATCC 824] gi|325509547|gb|ADZ21183.1| S-adenosyl-methyltransferase MraW [Clostridium acetobutylicum EA 2018] Length = 312 Score = 398 bits (1022), Expect = e-109, Method: Composition-based stats. Identities = 108/308 (35%), Positives = 166/308 (53%), Gaps = 10/308 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 +HVPVLLE+ I LN + +D T G G+S K +I +D+D A+ Sbjct: 4 NHVPVLLEETIENLNIKEDGIYVDCTLGGAGHSSEILKRLSSKGRLIGIDQDKDALKAAS 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E +++YK + FS +++ + + VDG++ DLGVSS Q+D +RGFS+ P Sbjct: 64 ERLKEYK-NLTFVHDNFSNIKNILEELKIDKVDGILADLGVSSYQLDEPERGFSYMNDAP 122 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ S SA DV+N + + L I+ GEEK A RIA IV++R TT +L Sbjct: 123 LDMRMNRDSEFSAYDVINGYDEEKLYSIIKNYGEEKFAKRIAKFIVEKRSEEAINTTFEL 182 Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+ + + HPA R+FQA+RI VN E+E L + + + LK+ G + +++F Sbjct: 183 VDIIKAAIPAKFRRQGPHPAKRTFQAIRIEVNQELEILNKTIEDSVDKLKSEGRICIITF 242 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK + M + + + IT+K + + ++ +N RSRSA Sbjct: 243 HSLEDRIVKNKYRELQDPCMCPKDIPMCVCGKKPKIKIITRKPIEASSYELEYNPRSRSA 302 Query: 310 KLRAGMRT 317 KLR + Sbjct: 303 KLRVAEKI 310 >gi|225028107|ref|ZP_03717299.1| hypothetical protein EUBHAL_02377 [Eubacterium hallii DSM 3353] gi|224954577|gb|EEG35786.1| hypothetical protein EUBHAL_02377 [Eubacterium hallii DSM 3353] Length = 315 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 102/306 (33%), Positives = 170/306 (55%), Gaps = 9/306 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H ++LE+VI L P + +D T G G+S K +I +D+D A+ + Sbjct: 5 HKSIMLEEVIESLAIKPNGIYVDGTLGGAGHSSEIVKRLGEDGRLIGIDQDGEAIEAATK 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ YK++ ++ ++ ++Q+++ + D G VDG++ DLGVSS Q+D +RGF++++ PL Sbjct: 65 RLKPYKDKVTIVRSNYAQMKEVLRDLGIPKVDGILLDLGVSSYQLDNAERGFTYREDVPL 124 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM +A D+VN + +L I+ GE+K A IA IV+ RQ P +TT L Sbjct: 125 DMRMDQRQTKTAKDIVNDYSEMELYHIIRNYGEDKFAKNIAKHIVQARQKTPIETTGQLI 184 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + + HPA ++FQA+RI +N+E++ L L L G + +++FH Sbjct: 185 EVIKAAIPKKVRATGGHPAKKTFQAIRIELNHELDVLKNNLEDMIDLLNDEGRIAIITFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK F + + + + + IT+K +VP +E++ N RS+SAK Sbjct: 245 SLEDRIVKNIFRTSERPCICPPEFPVCVCGRVSKGKVITRKPIVPGKEELEENSRSKSAK 304 Query: 311 LRAGMR 316 LR R Sbjct: 305 LRVFER 310 >gi|86358458|ref|YP_470350.1| S-adenosyl-methyltransferase MraW [Rhizobium etli CFN 42] gi|123511371|sp|Q2K6B3|RSMH_RHIEC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|86282560|gb|ABC91623.1| S-adenosyl-methyltransferase protein [Rhizobium etli CFN 42] Length = 341 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 178/323 (55%), Positives = 227/323 (70%), Gaps = 1/323 (0%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+PVLL +V+A L+PAPGK+ILD TFGAGGYS + G+ VIALDRDP A++ GQ + Sbjct: 19 HIPVLLNEVLAALSPAPGKLILDGTFGAGGYSAAILAAGAEVIALDRDPSAIAAGQAMVA 78 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 + + L A FS L D+ P G+DGVV D+GVSSMQID +RGFSFQKSGPLDMRMS Sbjct: 79 AHAGRLRLIHAQFSNLGDHAPQGGLDGVVLDIGVSSMQIDEPERGFSFQKSGPLDMRMSA 138 Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199 +G+SA+DVVN+A V DL RI LGEE QA RIAHAI KRR+ PF+TT+DL+ LI+ Sbjct: 139 TGVSAADVVNRAKVADLIRIFHFLGEENQAPRIAHAIEKRREEKPFETTRDLAGLIELVT 198 Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259 ++IHPATR FQALRIFVN+E+ ELAQ L +AE+ LK GG L+VV+FHSLEDR+VK Sbjct: 199 PRKMKDKIHPATRVFQALRIFVNDELGELAQALFAAERTLKPGGRLVVVTFHSLEDRIVK 258 Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT-V 318 KFF+ R+G+ RH+ ++ A F +I K +V ++ + N R+RSAKLRAG+RT Sbjct: 259 KFFSDRAGRATGSRHLPAAHERAATFTAIGKPMVSASEAEAEANPRARSAKLRAGLRTDA 318 Query: 319 ERSIEDDSFVHLPRLPTLSQFRG 341 D S P L +L + G Sbjct: 319 AAEAADMSLFGFPNLASLGKLGG 341 >gi|2149901|gb|AAC45631.1| unknown [Enterococcus faecalis] Length = 319 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 104/312 (33%), Positives = 170/312 (54%), Gaps = 11/312 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPFAVSCGQE 76 H VLL++ + L P V +D TFG G+S ++ A D+D A++ + Sbjct: 8 HYTVLLKETVDGLQVKPDGVYVDCTFGGAGHSEYLLTQLNEHGHLYAFDQDQKALAHAKT 67 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++ Y K Q + ++ F +++ + + GV DG+++DLGVSS Q+D +RGFS+ + Sbjct: 68 RLQKYVDKGQVTFIKSNFRNIKEELAEHGVFHVDGILYDLGVSSPQLDEAERGFSYHQDA 127 Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM ++A +VVN + +L +I GEEK + +IA I + R+ P +TT + Sbjct: 128 PLDMRMDQDAPLTAREVVNTYSYSELVKIFFRYGEEKFSKQIAREIERVREKQPIETTGE 187 Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I+ + ++ HPA R FQA+RI VN+E+ + + L A L G + V++ Sbjct: 188 LVEIIKTAIPAPARRKGGHPAKRIFQAIRIAVNDELGAVEESLEQAIDLLAKNGRISVIT 247 Query: 250 FHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK F S + + + + IT+K ++P+ +++ N RSRS Sbjct: 248 FHSLEDRIVKTMFKEYSTVQDLPPGIPVVPEEFQPELKVITRKPILPSDSELSENNRSRS 307 Query: 309 AKLRAGMRTVER 320 AKLR + R Sbjct: 308 AKLRIAEKIKSR 319 >gi|222149144|ref|YP_002550101.1| S-adenosyl-methyltransferase MraW [Agrobacterium vitis S4] gi|263446656|sp|B9JY62|RSMH_AGRVS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|221736130|gb|ACM37093.1| S-adenosyl-methyltransferase MraW [Agrobacterium vitis S4] Length = 341 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 175/322 (54%), Positives = 229/322 (71%), Gaps = 1/322 (0%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+PVLLE VI L P+ GKVILD TFGAGGY+ + G++VIALDRDP A++ GQ + Sbjct: 19 HIPVLLEPVIEALEPSAGKVILDGTFGAGGYTSAILDTGADVIALDRDPNAIAGGQAMVA 78 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 + +L FS L ++ P+ G+DG+V D+GVSSMQID +RGFSFQ++GPLDMRMS Sbjct: 79 ARAGRLTLHHTRFSTLDNFAPEGGLDGIVLDIGVSSMQIDEAERGFSFQRNGPLDMRMSG 138 Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199 +G+SA+DVVN+A V DL RI G LGEEKQ+ RIA AI KRR + PFQTT+DL+ +I+ Sbjct: 139 TGVSAADVVNRAKVGDLIRIFGFLGEEKQSGRIARAIEKRRVNHPFQTTRDLAGMIEIVT 198 Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259 ++IHPATR FQALR+FVN+E+ ELA+ L +AE+ALK GG L+VV+FHSLEDR+VK Sbjct: 199 PRKAKDKIHPATRVFQALRVFVNDELGELAEALFAAERALKPGGRLVVVTFHSLEDRIVK 258 Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319 KFF+ RSGK RHM + PA F+ + K +V T+E+ N R+RSAKLRAG+RT Sbjct: 259 KFFSDRSGKAAGSRHMPMAFERPATFEPVGKGMVTATEEEAEINPRARSAKLRAGIRTAH 318 Query: 320 RSI-EDDSFVHLPRLPTLSQFR 340 ++ D S LP L + + Sbjct: 319 PAMKADFSIFDLPDLAEIERLG 340 >gi|257885174|ref|ZP_05664827.1| methyltransferase [Enterococcus faecium 1,231,501] gi|261206514|ref|ZP_05921214.1| methyltransferase [Enterococcus faecium TC 6] gi|289565424|ref|ZP_06445873.1| methylase MraW [Enterococcus faecium D344SRF] gi|294614715|ref|ZP_06694617.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium E1636] gi|294618987|ref|ZP_06698482.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium E1679] gi|257821026|gb|EEV48160.1| methyltransferase [Enterococcus faecium 1,231,501] gi|260079224|gb|EEW66915.1| methyltransferase [Enterococcus faecium TC 6] gi|289162753|gb|EFD10604.1| methylase MraW [Enterococcus faecium D344SRF] gi|291592453|gb|EFF24060.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium E1636] gi|291594648|gb|EFF26030.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium E1679] Length = 319 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 108/313 (34%), Positives = 173/313 (55%), Gaps = 10/313 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H V+L++ + LN P V +D T G G+S ++ A D+D A+ Sbjct: 3 ETFQHYTVMLKETVDGLNIKPDGVYVDCTLGGAGHSEYLLSQLSSKGHLYAFDQDQKAID 62 Query: 73 CGQETMRDYKEQ--FSLFQATFSQLQDYVPDK--GVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + + Y EQ + +A F +L++ + + VDG+++DLGVSS Q+D +RGFS+ Sbjct: 63 HAKLRLASYVEQGMVTFIKANFRELEERLSEHVDKVDGILYDLGVSSPQLDEAERGFSYH 122 Query: 129 KSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + PLDMRM S +SA V+N+ + +L +I GEEK + +IA I + R++ P QT Sbjct: 123 QDAPLDMRMDQSAPLSAYHVINEYSYHELVKIFFRYGEEKFSKQIAREIERVRKTKPIQT 182 Query: 188 TQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T +L +I++ + ++ HPA R FQA+RI VN+E+ L A + LK G + Sbjct: 183 TGELVEIIKQVIPAPARRKGGHPAKRIFQAVRIAVNDELGAEEASLEQAIRLLKVNGRIS 242 Query: 247 VVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V++FHSLEDR+VK F S + + + + + IT+K ++P++E++A N R Sbjct: 243 VITFHSLEDRIVKSMFKEYSTVQDLPPGLPVIPDEFQPELKVITRKPILPSEEELAENNR 302 Query: 306 SRSAKLRAGMRTV 318 SRSAKLR + Sbjct: 303 SRSAKLRIAEKIR 315 >gi|222086453|ref|YP_002544986.1| S-adenosyl-methyltransferase protein [Agrobacterium radiobacter K84] gi|263446643|sp|B9JH59|RSMH_AGRRK RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|221723901|gb|ACM27057.1| S-adenosyl-methyltransferase protein [Agrobacterium radiobacter K84] Length = 341 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 180/323 (55%), Positives = 229/323 (70%), Gaps = 1/323 (0%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+PVLL++V+ L PAPGK+ILD TFGAGGY+ + G+++IALDRDP A++ GQ + Sbjct: 19 HIPVLLKEVLEALAPAPGKLILDGTFGAGGYTSAILAAGADMIALDRDPTAIAAGQSMVA 78 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 + + +L Q+ FSQL D+ P G+DGVV D+GVSSMQ+D +RGFSF K+GPLDMRMS Sbjct: 79 AHAGRLTLIQSQFSQLADHAPQGGLDGVVLDIGVSSMQLDEAERGFSFSKNGPLDMRMSA 138 Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199 SG+SA+DVVN A + DL RI LGEEKQA RIAHAI KRR APF TT+DL+ LI+ Sbjct: 139 SGVSAADVVNHAKLADLIRIFVFLGEEKQAPRIAHAIEKRRAEAPFVTTRDLAGLIEIVT 198 Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259 ++IHPATR FQALRIFVN+E+ ELAQ L +AE+ALK GG L+VV+FHSLEDR+VK Sbjct: 199 PRKAKDKIHPATRVFQALRIFVNDELGELAQALFAAERALKPGGRLVVVTFHSLEDRIVK 258 Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT-V 318 KFFA RSG+ RHM + A F I K ++ + + N R+RSAKLRAG+RT V Sbjct: 259 KFFADRSGRAGGSRHMPMVHERLATFDPIGKPMISASDAEAEINPRARSAKLRAGLRTSV 318 Query: 319 ERSIEDDSFVHLPRLPTLSQFRG 341 + D S LP L +L + G Sbjct: 319 QAEAADLSIFDLPNLASLGKLGG 341 >gi|126649733|ref|ZP_01721969.1| S-adenosyl-methyltransferase MraW [Bacillus sp. B14905] gi|126593452|gb|EAZ87397.1| S-adenosyl-methyltransferase MraW [Bacillus sp. B14905] Length = 316 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 109/316 (34%), Positives = 170/316 (53%), Gaps = 9/316 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSC 73 + DH VLL++ + LN P V +D T G G+S +I D+D A+ Sbjct: 1 MFDHTTVLLKETVDGLNIDPDGVYVDCTLGGAGHSEYLVHQLSDKGRLICFDQDMTAIEN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + Y E+ + + F L++ + G VDG+++DLGVSS Q+D +RGFS+ Sbjct: 61 AKIRLAPYIERVTFIHSNFRYLKEELLAHGFEQVDGILYDLGVSSPQLDTPERGFSYHHD 120 Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM + ++A +VVNQ +DL RI GEEK + ++A I + R+SAP +TT Sbjct: 121 APLDMRMDQTATLTAFEVVNQWAYEDLVRIFFRYGEEKFSKQVARKIEEARKSAPIETTG 180 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L LI++ + + + HPA R FQA+RI VN+E+ L A + GG + V+ Sbjct: 181 QLVELIKEGIPAAARRKGGHPAKRIFQAIRIAVNDELGAAEDSLVDAIDMINVGGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K F S + + + + I++K ++P+ E++ N R+R Sbjct: 241 TFHSLEDRLCKTIFKEASSLPELPPNLPVIPDDMKPTLKLISRKPILPSDEELEVNNRAR 300 Query: 308 SAKLRAGMRTVERSIE 323 SAKLR + ++ E Sbjct: 301 SAKLRVVEKINDKGRE 316 >gi|160933348|ref|ZP_02080736.1| hypothetical protein CLOLEP_02193 [Clostridium leptum DSM 753] gi|156867225|gb|EDO60597.1| hypothetical protein CLOLEP_02193 [Clostridium leptum DSM 753] Length = 308 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 120/303 (39%), Positives = 174/303 (57%), Gaps = 7/303 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77 H+PVLL + I L P V +D T G GG+S + K +IA+D+DP A++ + Sbjct: 5 HLPVLLRETIEGLAVKPDGVYVDGTAGGGGHSEAIAKRLSTGRLIAIDQDPDAIAAVTKR 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + DY ++ +A FSQ+++ V GVD GV+ D+GVSS Q+D +RGFS+ PLD Sbjct: 65 LADYPG-VTVCRANFSQMEEVVRSLGVDSVDGVLMDIGVSSHQLDTPERGFSYHSDAPLD 123 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRMS G A D+VN ++L IL GEE+ + RIA I R+ AP +TT L+ + Sbjct: 124 MRMSQEGPGAGDLVNSLPWQELAEILSRYGEERFSKRIAQGIAAAREQAPIETTFQLAEI 183 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 ++ + HPA ++FQALRI VN E++ L++GL +A LK GG L V++FHSLE Sbjct: 184 VKNAYPAAARRDGHPARKTFQALRIAVNGELDRLSEGLDAAFSLLKPGGRLAVITFHSLE 243 Query: 255 DRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 DRLVK+ AS + + +T+K V ++ ++ N RSRSAKLR Sbjct: 244 DRLVKRRMASWCQGCTCPPDFPVCVCGKTPSAELVTRKPVKASETELEKNPRSRSAKLRV 303 Query: 314 GMR 316 +R Sbjct: 304 CIR 306 >gi|89099599|ref|ZP_01172474.1| S-adenosyl-methyltransferase MraW [Bacillus sp. NRRL B-14911] gi|89085752|gb|EAR64878.1| S-adenosyl-methyltransferase MraW [Bacillus sp. NRRL B-14911] Length = 310 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 113/309 (36%), Positives = 169/309 (54%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + DH VLLE+ +A L+ P V +D T G G+S + A D+D A+ Sbjct: 1 MFDHKTVLLEETVAGLDIKPDGVYVDCTMGGAGHSELILTQLSSRGKLYAFDQDETAIEN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130 QE + Y ++ ++ ++ F L++ + GV DGV++DLGVSS Q+D +RGFS+ Sbjct: 61 AQEKLSKYGDKITIIKSNFLHLKEELEKAGVTEVDGVLYDLGVSSPQLDTPERGFSYHHD 120 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM +SA +VVN +DL RI GEEK + +IA I R+ AP +TT Sbjct: 121 APLDMRMDKDASLSAYEVVNDWPYEDLVRIFFRYGEEKFSKQIARKIEAAREKAPIETTS 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L LI+ + ++ HPA R FQA+RI VN+E+ + L A LK GG + V+ Sbjct: 181 QLVELIKDGIPAPARRKGGHPAKRVFQAIRIAVNDELGVFEKSLEQAIDILKPGGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F S + I + V + + +K ++P++E++ N R+R Sbjct: 241 TFHSLEDRICKATFKKASETPPLPPGLPIIPDEFKPVLKLVARKPILPSEEELEENNRAR 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRVAEK 309 >gi|29375571|ref|NP_814725.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis V583] gi|29343032|gb|AAO80795.1| conserved hypothetical protein TIGR00006 [Enterococcus faecalis V583] Length = 319 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 103/312 (33%), Positives = 169/312 (54%), Gaps = 11/312 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPFAVSCGQE 76 H VLL++ + L P V +D T G G+S ++ A D+D A++ + Sbjct: 8 HYTVLLKETVDGLQVKPDGVYVDCTLGGAGHSEYLLTQLNEHGHLYAFDQDQKALAHAKT 67 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++ Y K Q + ++ F +++ + + GV DG+++DLGVSS Q+D +RGFS+ + Sbjct: 68 RLQKYVDKGQVTFIKSNFRNIKEELAEHGVFHVDGILYDLGVSSPQLDEAERGFSYHQDA 127 Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM ++A +VVN + +L +I GEEK + +IA I + R+ P +TT + Sbjct: 128 PLDMRMDQDAPLTAREVVNTYSYSELVKIFFRYGEEKFSKQIAREIERVREKQPIETTGE 187 Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I+ + ++ HPA R FQA+RI VN+E+ + + L A L G + V++ Sbjct: 188 LVEIIKTAIPAPARRKGGHPAKRIFQAIRIAVNDELGAVEESLEQAIDLLAKNGRISVIT 247 Query: 250 FHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK F S + + + + IT+K ++P+ +++ N RSRS Sbjct: 248 FHSLEDRIVKTMFKEYSTVQDLPPGIPVVPEEFQPELKVITRKPILPSDSELSENNRSRS 307 Query: 309 AKLRAGMRTVER 320 AKLR + R Sbjct: 308 AKLRIAEKIKSR 319 >gi|167037220|ref|YP_001664798.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320115639|ref|YP_004185798.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|262825860|sp|B0K8J9|RSMH_THEP3 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|166856054|gb|ABY94462.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319928730|gb|ADV79415.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 308 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 114/304 (37%), Positives = 171/304 (56%), Gaps = 8/304 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77 H VLL++ I LN P + +D T G GG+S K +IA+DRD A+ +E Sbjct: 5 HKSVLLKETIEYLNIKPEGIYVDGTLGGGGHSEEILKRLTTGKLIAIDRDLDAIKASKER 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 +++YK F +++ + VDG++ DLGVSS Q++ RGFS+ K P+D Sbjct: 65 LKNYK-NAEYINDNFKNIKEILKSLNIDKVDGILLDLGVSSYQLEEVKRGFSYMKDAPMD 123 Query: 135 MRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM + SA DVVN+ + ++L R++ GEEK ASRIA IVK R+ +TT L Sbjct: 124 MRMDKNSPFSAYDVVNKYSQQELERVIREYGEEKWASRIAKFIVKEREKGEIKTTFQLVE 183 Query: 194 LIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ V ++ HPA R+FQA+RI VN E++ L + + + L+ G + +++FHS Sbjct: 184 IIKNAVPASARREGPHPAKRTFQAIRIEVNEELKGLDKAIEDMVEVLRGKGRIAIITFHS 243 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK F +M + V + ITKK V+P++E++ N RSRSAKLR Sbjct: 244 LEDRIVKNTFKKLENPCTCPPNMPCTCGKKPVVKIITKKPVLPSKEEIETNSRSRSAKLR 303 Query: 313 AGMR 316 + Sbjct: 304 VAEK 307 >gi|28211297|ref|NP_782241.1| S-adenosyl-methyltransferase MraW [Clostridium tetani E88] gi|42559471|sp|Q894B4|RSMH_CLOTE RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|28203737|gb|AAO36178.1| S-adenosyl-methyltransferase mraW [Clostridium tetani E88] Length = 310 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 109/307 (35%), Positives = 175/307 (57%), Gaps = 10/307 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQ 75 H+ VLL++ I LN + +D T G G+S K +I +D+D A+ Sbjct: 4 KHISVLLDECIEGLNIKENGIYVDCTLGGAGHSSEILKNLSKEGKLIGIDQDEEALKAAS 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E +++Y E + F ++D + + VDG++ DLGVSS Q+D RGFS+ ++ P Sbjct: 64 EKLKEY-ENVLYKHSNFYHIKDILEELEVGKVDGILMDLGVSSYQLDEKSRGFSYMQNAP 122 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ S + A +VVN + L RI+ GEE+ A RI++ IV+ R++ +TT +L Sbjct: 123 LDMRMNKKSSLDAYEVVNFYDESKLARIIKDYGEERFAKRISNFIVESRENKKIETTGEL 182 Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I++ + + HPA R+FQA+RI VN E+E L + + + K+LK+GG + +++F Sbjct: 183 VDIIKRAIPAKFRREGPHPAKRTFQAIRIEVNGELEILNKAIEDSVKSLKSGGRIAIITF 242 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK F + + I + + + IT+K + P++E+V N RSRSA Sbjct: 243 HSLEDRIVKNKFKELEDPCICPKDFPICTCGKEPLVKIITRKPIDPSKEEVEINPRSRSA 302 Query: 310 KLRAGMR 316 KLR + Sbjct: 303 KLRIAEK 309 >gi|255971443|ref|ZP_05422029.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Enterococcus faecalis T1] gi|255974058|ref|ZP_05424644.1| mraW [Enterococcus faecalis T2] gi|256617913|ref|ZP_05474759.1| mraW [Enterococcus faecalis ATCC 4200] gi|256761747|ref|ZP_05502327.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Enterococcus faecalis T3] gi|256957082|ref|ZP_05561253.1| mraW [Enterococcus faecalis DS5] gi|256960173|ref|ZP_05564344.1| mraW [Enterococcus faecalis Merz96] gi|256962585|ref|ZP_05566756.1| mraW [Enterococcus faecalis HIP11704] gi|257077878|ref|ZP_05572239.1| mraW [Enterococcus faecalis JH1] gi|257081242|ref|ZP_05575603.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis E1Sol] gi|257083900|ref|ZP_05578261.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis Fly1] gi|257086348|ref|ZP_05580709.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Enterococcus faecalis D6] gi|257089398|ref|ZP_05583759.1| S-adenosyl-methyltransferase mraW [Enterococcus faecalis CH188] gi|257415608|ref|ZP_05592602.1| mraW [Enterococcus faecalis AR01/DG] gi|257418579|ref|ZP_05595573.1| S-adenosyl-methyltransferase mraW [Enterococcus faecalis T11] gi|257421238|ref|ZP_05598228.1| S-adenosyl-methyltransferase mraW [Enterococcus faecalis X98] gi|294780578|ref|ZP_06745941.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis PC1.1] gi|300859663|ref|ZP_07105751.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TUSoD Ef11] gi|30179792|sp|O07104|RSMH_ENTFA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|255962461|gb|EET94937.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Enterococcus faecalis T1] gi|255966930|gb|EET97552.1| mraW [Enterococcus faecalis T2] gi|256597440|gb|EEU16616.1| mraW [Enterococcus faecalis ATCC 4200] gi|256682998|gb|EEU22693.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Enterococcus faecalis T3] gi|256947578|gb|EEU64210.1| mraW [Enterococcus faecalis DS5] gi|256950669|gb|EEU67301.1| mraW [Enterococcus faecalis Merz96] gi|256953081|gb|EEU69713.1| mraW [Enterococcus faecalis HIP11704] gi|256985908|gb|EEU73210.1| mraW [Enterococcus faecalis JH1] gi|256989272|gb|EEU76574.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis E1Sol] gi|256991930|gb|EEU79232.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis Fly1] gi|256994378|gb|EEU81680.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Enterococcus faecalis D6] gi|256998210|gb|EEU84730.1| S-adenosyl-methyltransferase mraW [Enterococcus faecalis CH188] gi|257157436|gb|EEU87396.1| mraW [Enterococcus faecalis ARO1/DG] gi|257160407|gb|EEU90367.1| S-adenosyl-methyltransferase mraW [Enterococcus faecalis T11] gi|257163062|gb|EEU93022.1| S-adenosyl-methyltransferase mraW [Enterococcus faecalis X98] gi|294452405|gb|EFG20844.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis PC1.1] gi|300850481|gb|EFK78230.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TUSoD Ef11] gi|323480228|gb|ADX79667.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis 62] Length = 318 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 103/312 (33%), Positives = 169/312 (54%), Gaps = 11/312 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPFAVSCGQE 76 H VLL++ + L P V +D T G G+S ++ A D+D A++ + Sbjct: 7 HYTVLLKETVDGLQVKPDGVYVDCTLGGAGHSEYLLTQLNEHGHLYAFDQDQKALAHAKT 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++ Y K Q + ++ F +++ + + GV DG+++DLGVSS Q+D +RGFS+ + Sbjct: 67 RLQKYVDKGQVTFIKSNFRNIKEELAEHGVFHVDGILYDLGVSSPQLDEAERGFSYHQDA 126 Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM ++A +VVN + +L +I GEEK + +IA I + R+ P +TT + Sbjct: 127 PLDMRMDQDAPLTAREVVNTYSYSELVKIFFRYGEEKFSKQIAREIERVREKQPIETTGE 186 Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I+ + ++ HPA R FQA+RI VN+E+ + + L A L G + V++ Sbjct: 187 LVEIIKTAIPAPARRKGGHPAKRIFQAIRIAVNDELGAVEESLEQAIDLLAKNGRISVIT 246 Query: 250 FHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK F S + + + + IT+K ++P+ +++ N RSRS Sbjct: 247 FHSLEDRIVKTMFKEYSTVQDLPPGIPVVPEEFQPELKVITRKPILPSDSELSENNRSRS 306 Query: 309 AKLRAGMRTVER 320 AKLR + R Sbjct: 307 AKLRIAEKIKSR 318 >gi|291550007|emb|CBL26269.1| S-adenosyl-methyltransferase MraW [Ruminococcus torques L2-14] Length = 311 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 103/307 (33%), Positives = 169/307 (55%), Gaps = 9/307 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 +HV VLL + + LN P + +DAT G GG++ C +I +D+D A+ Sbjct: 4 EHVSVLLHETVDGLNVKPDGIYVDATLGGGGHAYEVCTKLGEQGRLIGIDQDADAIKAAG 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + + E+ ++ ++ + ++ + + G VDG+ DLGVSS Q+D +RGFS++ P Sbjct: 64 KRLEGFGEKVTIIRSNYCDMKPRLHEIGIDKVDGITVDLGVSSYQLDTAERGFSYRVDAP 123 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM ++A D+VN + +L R++ GE++ A IA IV R P +TT L Sbjct: 124 LDMRMDQRQKMTARDIVNDYSESELYRVIRDYGEDRFAKNIAKHIVAERAKGPIETTGQL 183 Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 + +I + + HP+ R+FQALRI +N+E++ L L L GG L +++F Sbjct: 184 NEIISHAIPMKIQKTSGHPSKRTFQALRIELNHELDVLRDTLDDMIDLLNPGGRLCIITF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK F + H + + + + IT+K ++P++E++ N RS+SA Sbjct: 244 HSLEDRIVKSSFRKNENPCICPSHFPVCVCGNVSKGKVITRKPILPSEEELTVNSRSKSA 303 Query: 310 KLRAGMR 316 KLR R Sbjct: 304 KLRIFER 310 >gi|227555099|ref|ZP_03985146.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis HH22] gi|229548930|ref|ZP_04437655.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis ATCC 29200] gi|293382538|ref|ZP_06628472.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis R712] gi|293387861|ref|ZP_06632400.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis S613] gi|307268069|ref|ZP_07549457.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX4248] gi|307272003|ref|ZP_07553269.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0855] gi|307275472|ref|ZP_07556614.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX2134] gi|307278960|ref|ZP_07560019.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0860] gi|307289409|ref|ZP_07569363.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0109] gi|312904551|ref|ZP_07763709.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0635] gi|312906859|ref|ZP_07765856.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis DAPTO 512] gi|312952739|ref|ZP_07771601.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0102] gi|312978886|ref|ZP_07790612.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis DAPTO 516] gi|227175767|gb|EEI56739.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis HH22] gi|229305951|gb|EEN71947.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis ATCC 29200] gi|291080086|gb|EFE17450.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis R712] gi|291082708|gb|EFE19671.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis S613] gi|306499664|gb|EFM69027.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0109] gi|306504347|gb|EFM73558.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0860] gi|306507860|gb|EFM76988.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX2134] gi|306511298|gb|EFM80302.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0855] gi|306515710|gb|EFM84237.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX4248] gi|310627113|gb|EFQ10396.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis DAPTO 512] gi|310629255|gb|EFQ12538.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0102] gi|310632064|gb|EFQ15347.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0635] gi|311288323|gb|EFQ66879.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis DAPTO 516] gi|315031725|gb|EFT43657.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0017] gi|315034218|gb|EFT46150.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0027] gi|315144374|gb|EFT88390.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX2141] gi|315149512|gb|EFT93528.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0012] gi|315153065|gb|EFT97081.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0031] gi|315156838|gb|EFU00855.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0043] gi|315157624|gb|EFU01641.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0312] gi|315162946|gb|EFU06963.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0645] gi|315165146|gb|EFU09163.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX1302] gi|315168045|gb|EFU12062.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX1341] gi|315171926|gb|EFU15943.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX1342] gi|315173297|gb|EFU17314.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX1346] gi|315574267|gb|EFU86458.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0309B] gi|315577395|gb|EFU89586.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0630] gi|315581578|gb|EFU93769.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0309A] gi|327534575|gb|AEA93409.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis OG1RF] gi|329574359|gb|EGG55931.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX1467] Length = 322 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 103/312 (33%), Positives = 169/312 (54%), Gaps = 11/312 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPFAVSCGQE 76 H VLL++ + L P V +D T G G+S ++ A D+D A++ + Sbjct: 11 HYTVLLKETVDGLQVKPDGVYVDCTLGGAGHSEYLLTQLNEHGHLYAFDQDQKALAHAKT 70 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++ Y K Q + ++ F +++ + + GV DG+++DLGVSS Q+D +RGFS+ + Sbjct: 71 RLQKYVDKGQVTFIKSNFRNIKEELAEHGVFHVDGILYDLGVSSPQLDEAERGFSYHQDA 130 Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM ++A +VVN + +L +I GEEK + +IA I + R+ P +TT + Sbjct: 131 PLDMRMDQDAPLTAREVVNTYSYSELVKIFFRYGEEKFSKQIAREIERVREKQPIETTGE 190 Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I+ + ++ HPA R FQA+RI VN+E+ + + L A L G + V++ Sbjct: 191 LVEIIKTAIPAPARRKGGHPAKRIFQAIRIAVNDELGAVEESLEQAIDLLAKNGRISVIT 250 Query: 250 FHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK F S + + + + IT+K ++P+ +++ N RSRS Sbjct: 251 FHSLEDRIVKTMFKEYSTVQDLPPGIPVVPEEFQPELKVITRKPILPSDSELSENNRSRS 310 Query: 309 AKLRAGMRTVER 320 AKLR + R Sbjct: 311 AKLRIAEKIKSR 322 >gi|322805771|emb|CBZ03336.1| rRNAsmall subunit methyltransferase H [Clostridium botulinum H04402 065] Length = 309 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 113/307 (36%), Positives = 164/307 (53%), Gaps = 9/307 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 H+ VLLE+ I LN V +D T G GG+S+ K S+ +I +D+D A+ + Sbjct: 4 KHISVLLEETIDSLNIKEDGVYVDCTLGGGGHSKEILKKLSHKGKLIGIDQDTSAIKAAK 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E ++DY E F + + + VDG++ DLGVSS Q+D RGFS+ K P Sbjct: 64 EKLKDY-ENIIYVHNNFYNIDSILEELDIDKVDGIIMDLGVSSYQLDEASRGFSYMKDAP 122 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ SA +VVN ++L +IL GEEK + +IA IV++R P +TT +L Sbjct: 123 LDMRMNREENFSAYNVVNSYEEEELFKILKNYGEEKFSRKIARFIVEKRTENPIETTGEL 182 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+K + HPA R+FQA+RI VN E++ L + + + L G L +++FH Sbjct: 183 VEIIRKAIPAKFQREGHPAKRTFQAIRIEVNKELQILNKAIEDSVNRLNKDGRLSIITFH 242 Query: 252 SLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK F I + ITKK + P++E+ N RSRSAK Sbjct: 243 SLEDRIVKVKFKELEKPCTCPPSFPICVCRKEPQIKIITKKPIEPSKEEKEINSRSRSAK 302 Query: 311 LRAGMRT 317 LR + Sbjct: 303 LRVCRKI 309 >gi|256852642|ref|ZP_05558013.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis T8] gi|256711987|gb|EEU27024.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis T8] Length = 319 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 102/309 (33%), Positives = 168/309 (54%), Gaps = 11/309 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPFAVSCGQE 76 H VLL++ + L P V +D T G G+S ++ A D+D A++ + Sbjct: 8 HYTVLLKETVDGLQVKPDGVYVDCTLGGAGHSEYLLTQLNEHGHLYAFDQDQKALAHAKT 67 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++ Y K Q + ++ F +++ + + GV DG+++DLGVSS Q+D +RGFS+ + Sbjct: 68 RLQKYVDKGQVTFIKSNFRNIKEELAEHGVFHVDGILYDLGVSSPQLDEAERGFSYHQDA 127 Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM ++A +VVN + +L +I GEEK + +IA I + R+ P +TT + Sbjct: 128 PLDMRMDQDAPLTAREVVNTYSYSELVKIFFRYGEEKFSKQIAREIERVREKQPIETTGE 187 Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I+ + ++ HPA R FQA+RI VN+E+ + + L A L G + V++ Sbjct: 188 LVEIIKTAIPAPARRKGGHPAKRIFQAIRIAVNDELGAVEESLEQAIDLLAKNGRISVIT 247 Query: 250 FHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK F S + + + + IT+K ++P+ +++ N RSRS Sbjct: 248 FHSLEDRIVKTMFKEYSTVQDLPPGIPVVPEEFQPELKVITRKPILPSDSELSENNRSRS 307 Query: 309 AKLRAGMRT 317 AKLR + Sbjct: 308 AKLRIAEKI 316 >gi|227550453|ref|ZP_03980502.1| S-adenosyl-methyltransferase [Enterococcus faecium TX1330] gi|257897144|ref|ZP_05676797.1| methyltransferase [Enterococcus faecium Com12] gi|293377368|ref|ZP_06623572.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium PC4.1] gi|227180354|gb|EEI61326.1| S-adenosyl-methyltransferase [Enterococcus faecium TX1330] gi|257833709|gb|EEV60130.1| methyltransferase [Enterococcus faecium Com12] gi|292644060|gb|EFF62166.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium PC4.1] Length = 319 Score = 396 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 106/313 (33%), Positives = 172/313 (54%), Gaps = 10/313 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H V+L++ + LN V +D T G G+S ++ A D+D A+ Sbjct: 3 ETFQHYTVMLKETVDGLNIKSDGVYVDCTLGGAGHSEYLLSQLSSKGHLYAFDQDQKAID 62 Query: 73 CGQETMRDYKEQ--FSLFQATFSQLQDYVPDK--GVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + + Y EQ + +A F +L++ + + VDG+++DLGVSS Q+D +RGFS+ Sbjct: 63 HAKLRLASYVEQGMVTFIKANFRELEERLSEYVDKVDGILYDLGVSSPQLDEAERGFSYH 122 Query: 129 KSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + PLDMRM S ++A V+N+ + +L +I GEEK + +IA I + R++ P QT Sbjct: 123 QDAPLDMRMDQSAPLTAYHVINEYSYHELVKIFFRYGEEKFSKQIAREIERVRKTKPIQT 182 Query: 188 TQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T +L +I++ + ++ HPA R FQA+RI VN+E+ L A + LK G + Sbjct: 183 TGELVEIIKQVIPAPARRKGGHPAKRIFQAVRIAVNDELGAEETSLEQAIRLLKVNGRIS 242 Query: 247 VVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V++FHSLEDR+VK F S + + + + + IT+K ++P++E++A N R Sbjct: 243 VITFHSLEDRIVKSMFKEYSTVQDLPPGLPVIPDEFQPELKVITRKPILPSEEELAENNR 302 Query: 306 SRSAKLRAGMRTV 318 SRSAKLR + Sbjct: 303 SRSAKLRIAEKIR 315 >gi|187779894|ref|ZP_02996367.1| hypothetical protein CLOSPO_03490 [Clostridium sporogenes ATCC 15579] gi|187773519|gb|EDU37321.1| hypothetical protein CLOSPO_03490 [Clostridium sporogenes ATCC 15579] Length = 309 Score = 396 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 115/307 (37%), Positives = 164/307 (53%), Gaps = 9/307 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 H+ VLLE+ I LN + +D T G GG+S+ K S+ +I +D+D A+ + Sbjct: 4 KHISVLLEETIDSLNIKEDGIYVDCTLGGGGHSKEILKKLSHKGKLIGIDQDTSALKAAK 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E ++DY E F + + + + VDG+V DLGVSS Q+D RGFS+ K P Sbjct: 64 ERLKDY-ENVIYVHNNFYNIDSILEELDIEKVDGIVMDLGVSSYQLDEASRGFSYMKDAP 122 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ SA DVVN ++L +IL GEEK + +IA IV+RR +TT +L Sbjct: 123 LDMRMNRDENFSAYDVVNSYGEEELFKILKNYGEEKFSRKIARFIVERRTEKSIETTGEL 182 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+K + HPA R+FQA+RI VN E++ L + + + L G L +++FH Sbjct: 183 VEIIKKAIPAKFQREGHPAKRTFQAIRIEVNKELQILNKAIEDSVNRLNKDGRLSIITFH 242 Query: 252 SLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK F I + ITKK + P++E+ N RSRSAK Sbjct: 243 SLEDRIVKVKFKELEKPCTCPPSFPICVCGKKPQIKIITKKPMEPSKEEKEINSRSRSAK 302 Query: 311 LRAGMRT 317 LR R Sbjct: 303 LRVCRRI 309 >gi|163941658|ref|YP_001646542.1| S-adenosyl-methyltransferase MraW [Bacillus weihenstephanensis KBAB4] gi|229061524|ref|ZP_04198868.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus AH603] gi|229168659|ref|ZP_04296381.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus AH621] gi|263447259|sp|A9VU80|RSMH_BACWK RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|163863855|gb|ABY44914.1| S-adenosyl-methyltransferase MraW [Bacillus weihenstephanensis KBAB4] gi|228614815|gb|EEK71918.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus AH621] gi|228717758|gb|EEL69408.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus AH603] Length = 310 Score = 396 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 111/309 (35%), Positives = 168/309 (54%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73 + HV VLL++ + L+ P +D T G GG+S G +IA D+D A+ Sbjct: 1 MFKHVTVLLKETVDGLDIKPSGTYVDCTLGGGGHSSYLLSQLTDGGKLIAFDQDEIAIQN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E Y EQF ++ F L + + + G VDG++FDLGVSS Q+D +RGFS+ Sbjct: 61 AKEKFSSYGEQFVTVKSNFRYLSEKLHELGITEVDGILFDLGVSSPQLDTPERGFSYHHD 120 Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM ++A DVVN + + L RI GEEK + +I I R++ +TT Sbjct: 121 APLDMRMDQDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQITRKIEAYRENKAIETTG 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L LI++ + ++ HPA R FQA+RI VN+E++ + L SA +K GG + V+ Sbjct: 181 ELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIDMVKPGGRVSVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F S + I + + IT+K ++P+ ++ N R+R Sbjct: 241 TFHSLEDRICKTTFKRNSTTPQLPQGLPIIPDEFKPKLKLITRKPILPSDIELEENNRAR 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRIAEK 309 >gi|229546836|ref|ZP_04435561.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX1322] gi|307290049|ref|ZP_07569973.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0411] gi|312901052|ref|ZP_07760343.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0470] gi|229308001|gb|EEN73988.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX1322] gi|306498891|gb|EFM68385.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0411] gi|311291878|gb|EFQ70434.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0470] gi|315029678|gb|EFT41610.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX4000] Length = 322 Score = 396 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 102/309 (33%), Positives = 168/309 (54%), Gaps = 11/309 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPFAVSCGQE 76 H VLL++ + L P V +D T G G+S ++ A D+D A++ + Sbjct: 11 HYTVLLKETVDGLQVKPDGVYVDCTLGGAGHSEYLLTQLNEHGHLYAFDQDQKALAHAKT 70 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++ Y K Q + ++ F +++ + + GV DG+++DLGVSS Q+D +RGFS+ + Sbjct: 71 RLQKYVDKGQVTFIKSNFRNIKEELAEHGVFHVDGILYDLGVSSPQLDEAERGFSYHQDA 130 Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM ++A +VVN + +L +I GEEK + +IA I + R+ P +TT + Sbjct: 131 PLDMRMDQDAPLTAREVVNTYSYSELVKIFFRYGEEKFSKQIAREIERVREKQPIETTGE 190 Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I+ + ++ HPA R FQA+RI VN+E+ + + L A L G + V++ Sbjct: 191 LVEIIKTAIPAPARRKGGHPAKRIFQAIRIAVNDELGAVEESLEQAIDLLAKNGRISVIT 250 Query: 250 FHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK F S + + + + IT+K ++P+ +++ N RSRS Sbjct: 251 FHSLEDRIVKTMFKEYSTVQDLPPGIPVVPEEFQPELKVITRKPILPSDSELSENNRSRS 310 Query: 309 AKLRAGMRT 317 AKLR + Sbjct: 311 AKLRIAEKI 319 >gi|307266529|ref|ZP_07548062.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter wiegelii Rt8.B1] gi|306918448|gb|EFN48689.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter wiegelii Rt8.B1] Length = 308 Score = 396 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 113/304 (37%), Positives = 171/304 (56%), Gaps = 8/304 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQET 77 H VLL++ I LN P + +D T G GG+S K +IA+DRD A+ +E Sbjct: 5 HKSVLLKETIEYLNIKPEGIYVDGTLGGGGHSEEILKRLPTGKLIAIDRDLDAIKASKER 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 +++YK F +++ + VDG++ DLGVSS Q++ +RGFS+ K PLD Sbjct: 65 LKNYK-NVEYINDNFKNIKEILKSLDIDKVDGILLDLGVSSYQLEEVERGFSYMKDAPLD 123 Query: 135 MRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM + SA DVVN+ + ++L R++ GEEK ASRIA I K R+ +TT L Sbjct: 124 MRMDKNSPFSAYDVVNKYSQQELERVIREYGEEKWASRIAKFIAKEREKGEIKTTFQLVE 183 Query: 194 LIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ V ++ HPA R+FQA+RI VN E++ L + + + L+ G + +++FHS Sbjct: 184 IIKNAVPASARREGPHPAKRTFQAIRIEVNEELKGLDKAIEDMVEVLRGKGRIAIITFHS 243 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK F +M + + + ITKK V+P++E++ N RSRSAKLR Sbjct: 244 LEDRIVKNTFKKLENPCTCPHNMPCTCGKEPLIKIITKKPVLPSKEEIETNSRSRSAKLR 303 Query: 313 AGMR 316 + Sbjct: 304 VAEK 307 >gi|227517912|ref|ZP_03947961.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0104] gi|227074666|gb|EEI12629.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0104] Length = 322 Score = 396 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 102/309 (33%), Positives = 168/309 (54%), Gaps = 11/309 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPFAVSCGQE 76 H VLL++ + L P V +D T G G+S ++ A D+D A++ + Sbjct: 11 HYTVLLKETVDGLQVKPDGVYVDCTLGGAGHSEYLLTQLNEHGHLYAFDQDQKALAHAKT 70 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++ Y K Q + ++ F +++ + + GV DG+++DLGVSS Q+D +RGFS+ + Sbjct: 71 RLQKYVDKGQVTFIKSNFRNIKEELAEHGVFHVDGILYDLGVSSPQLDEAERGFSYHQDA 130 Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM ++A +VVN + +L +I GEEK + +IA I + R+ P +TT + Sbjct: 131 PLDMRMDQDAPLTAREVVNTYSYGELVKIFFRYGEEKFSKQIAREIERVREKQPIETTGE 190 Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I+ + ++ HPA R FQA+RI VN+E+ + + L A L G + V++ Sbjct: 191 LVEIIKTAIPAPARRKGGHPAKRIFQAIRIAVNDELGAVEESLEQAIDLLAKNGRISVIT 250 Query: 250 FHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK F S + + + + IT+K ++P+ +++ N RSRS Sbjct: 251 FHSLEDRIVKTMFKEYSTVQDLPPGIPVVPEEFQPELKVITRKPILPSDSELSENNRSRS 310 Query: 309 AKLRAGMRT 317 AKLR + Sbjct: 311 AKLRIAEKI 319 >gi|205373089|ref|ZP_03225894.1| S-adenosyl-methyltransferase MraW [Bacillus coahuilensis m4-4] Length = 311 Score = 396 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 107/311 (34%), Positives = 168/311 (54%), Gaps = 9/311 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73 + +H VLL + + L P + +D T G G+S G ++ A D+D A+ Sbjct: 1 MFNHTTVLLRETVDELKIKPNGIYVDCTLGGAGHSEYLLSQLGEGGHLFAFDQDETALRH 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 E + Y ++ + ++ F L+ + + GVDG+++DLGVSS Q+D +RGFS+ Sbjct: 61 AAEKLNAYSDKVTYVKSNFRYLKSELTNLGVMGVDGILYDLGVSSPQLDTPERGFSYHHD 120 Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM G +SA +VVN+ + + L RI GEEK + +IA I R+ P +TT Sbjct: 121 APLDMRMDLQGAVSAYEVVNEWSYEKLVRIFFQYGEEKFSKQIARKIEAAREVNPIETTG 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L LI++ + ++ HPA R FQA+RI VN+E+ + + L GG + V+ Sbjct: 181 ELVELIKEGIPAPARRKGGHPAKRIFQAIRIAVNDELTAFEDSAKDGIQLLHKGGRMSVI 240 Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F S G + I + + +T+K ++P+ E++A N RSR Sbjct: 241 TFHSLEDRICKNLFKEYSKGPELPPGLPIIPEGYEPKLKIVTRKPILPSDEELAHNNRSR 300 Query: 308 SAKLRAGMRTV 318 SAKLR + Sbjct: 301 SAKLRVAEKNR 311 >gi|310659206|ref|YP_003936927.1| s-adenosyl-dependent methyltransferase activity on membrane-located substrates [Clostridium sticklandii DSM 519] gi|308825984|emb|CBH22022.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Clostridium sticklandii] Length = 310 Score = 396 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 111/306 (36%), Positives = 173/306 (56%), Gaps = 8/306 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76 HV VLL + + +L+ P + +D T G G+S K +I D+D A+S +E Sbjct: 4 KHVTVLLNEAVDILDIKPDGIYVDGTLGGAGHSLEIVKKLTSGKLICFDQDINAISAAKE 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++D+ ++ L + F L++ + G+ DG + DLGVSS Q+D +RGFS+ + PL Sbjct: 64 KLKDFMDKTILVHSNFENLREELNKLGIETIDGFLVDLGVSSHQLDVPERGFSYMQDAPL 123 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + +SA DVVN + +L R++ GEE ++RIA IV+RR + P +TT +L Sbjct: 124 DMRMDNNAELSAYDVVNTYSEAELKRVIKDYGEENWSARIAKIIVERRTTMPIRTTFELV 183 Query: 193 SLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 I+ + + HPA R+FQA+RI VN E++ + + L +A + GG+L V++FH Sbjct: 184 DAIKAAIPKKMRDENQHPAKRTFQAIRIEVNRELDVIEKTLLAAVDMMNEGGVLAVITFH 243 Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK F + V + IT+K ++P++ +V N RSRSAK Sbjct: 244 SLEDRIVKNVFKKLQYSCTCPPEFPVCICNSKQVVEIITRKPILPSENEVEMNPRSRSAK 303 Query: 311 LRAGMR 316 LRA + Sbjct: 304 LRAARK 309 >gi|326391684|ref|ZP_08213209.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter ethanolicus JW 200] gi|325992262|gb|EGD50729.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter ethanolicus JW 200] Length = 308 Score = 396 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 113/304 (37%), Positives = 171/304 (56%), Gaps = 8/304 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77 H VLL++ I LN P + +D T G GG+S K +IA+DRD A+ +E Sbjct: 5 HKSVLLKETIEYLNIKPEGIYVDGTLGGGGHSEEILKRLTTGKLIAIDRDLDAIKASKER 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 +++YK F +++ + VDG++ DLGVSS Q++ +RGFS+ K PLD Sbjct: 65 LKNYK-NVEYINDNFKNIKEILKSLDIDKVDGILLDLGVSSYQLEEVERGFSYMKDAPLD 123 Query: 135 MRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM + SA DVVN+ + ++L R++ GEEK ASRIA I K R+ +TT L Sbjct: 124 MRMDKNSPFSAYDVVNKYSQQELERVIREYGEEKWASRIAKFIAKEREKGEIKTTFQLVE 183 Query: 194 LIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ V ++ HPA R+FQA+RI VN E++ L + + + L+ G + +++FHS Sbjct: 184 IIKNAVPASARREGPHPAKRTFQAIRIEVNEELKGLDKAIEDMVEVLRGKGRIAIITFHS 243 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK F +M + + + ITKK V+P++E++ N RSRSAKLR Sbjct: 244 LEDRIVKNTFKKLENPCTCPHNMPCTCGKEPLIKIITKKPVLPSKEEIETNSRSRSAKLR 303 Query: 313 AGMR 316 + Sbjct: 304 VAEK 307 >gi|110800523|ref|YP_696548.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens ATCC 13124] gi|110803229|ref|YP_699148.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens SM101] gi|168206081|ref|ZP_02632086.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens E str. JGS1987] gi|168210772|ref|ZP_02636397.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens B str. ATCC 3626] gi|168215224|ref|ZP_02640849.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens CPE str. F4969] gi|168215494|ref|ZP_02641119.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens NCTC 8239] gi|169343521|ref|ZP_02864520.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens C str. JGS1495] gi|122958788|sp|Q0TP92|RSMH_CLOP1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|123047275|sp|Q0SRV9|RSMH_CLOPS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|110675170|gb|ABG84157.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens ATCC 13124] gi|110683730|gb|ABG87100.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens SM101] gi|169298081|gb|EDS80171.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens C str. JGS1495] gi|170662388|gb|EDT15071.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens E str. JGS1987] gi|170711095|gb|EDT23277.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens B str. ATCC 3626] gi|170713370|gb|EDT25552.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens CPE str. F4969] gi|182382153|gb|EDT79632.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens NCTC 8239] Length = 310 Score = 396 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 111/307 (36%), Positives = 169/307 (55%), Gaps = 10/307 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 HV VLL++ I LN + +D T G G+S K +I D+D A+ Sbjct: 4 KHVSVLLDECINALNIKEDGIYVDCTLGGAGHSSEIVKRLSSDGRLIGFDQDKDALKAAG 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E ++DYK + + F + D + D GVDG++ DLGVSS Q+D G+RGFS+ + P Sbjct: 64 ERLKDYK-NVTYVHSNFYAIYDVLTDLGIDGVDGILMDLGVSSYQLDNGERGFSYMQDAP 122 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ + SA ++VN + ++L RI+ GEEK A RIA IVK R+ +TT +L Sbjct: 123 LDMRMNRENEFSAYEIVNTYSEEELYRIIKEYGEEKFAKRIASFIVKNREEKNIETTLEL 182 Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+ + + HPA R+FQA+RI VN E+E +++ + K L GG + +++F Sbjct: 183 VEIIKAAIPAKARREGPHPAKRTFQAIRIEVNKELEIISKTILDGVKKLNKGGRMAIITF 242 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK F + + + I++K + ++E++ FN RSRSA Sbjct: 243 HSLEDRIVKNTFKELANPCTCPSEFPVCVCNRKPEVKLISRKPIEASKEELEFNPRSRSA 302 Query: 310 KLRAGMR 316 KLR + Sbjct: 303 KLRIIEK 309 >gi|182417987|ref|ZP_02949294.1| S-adenosyl-methyltransferase MraW [Clostridium butyricum 5521] gi|237667344|ref|ZP_04527328.1| S-adenosyl-methyltransferase MraW [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378158|gb|EDT75693.1| S-adenosyl-methyltransferase MraW [Clostridium butyricum 5521] gi|237655692|gb|EEP53248.1| S-adenosyl-methyltransferase MraW [Clostridium butyricum E4 str. BoNT E BL5262] Length = 310 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 105/308 (34%), Positives = 166/308 (53%), Gaps = 10/308 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 HV VLL + I LN + +D T G G+S K S +I +D+D A+ + Sbjct: 4 KHVSVLLNECIDGLNIKEDGIYVDCTLGGAGHSSHILKHLSKNGLLIGIDQDTDALKAAK 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E ++DY + + F + + + G VDG++ DLGVSS Q+D +RGFS+ + P Sbjct: 64 ERLKDY-DNVKYVHSNFYNIDSILNELGIEKVDGILMDLGVSSYQLDNAERGFSYMQDAP 122 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ + SA ++N + ++L +I+ GEEK A RIA+ IV RR P +TT +L Sbjct: 123 LDMRMNRDNDFSAYSIINDYSEEELYKIIRDYGEEKFAKRIANFIVNRRAEKPIETTFEL 182 Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+ + + HPA R+FQA+RI VN+E++ L + + L G + +++F Sbjct: 183 VDIIKAAIPAKARREGPHPAKRTFQAIRIEVNSELKILNKTIEDGVNRLNKDGRMAIITF 242 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK F R + + + + KK + P++E++ N RSRSA Sbjct: 243 HSLEDRIVKLKFRELENPCTCPREFPMCICGKKPLVKVLNKKGIAPSKEEIEENPRSRSA 302 Query: 310 KLRAGMRT 317 K+R + Sbjct: 303 KVRVVEKV 310 >gi|297588285|ref|ZP_06946928.1| S-adenosyl-methyltransferase MraW [Finegoldia magna ATCC 53516] gi|297573658|gb|EFH92379.1| S-adenosyl-methyltransferase MraW [Finegoldia magna ATCC 53516] Length = 312 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 104/309 (33%), Positives = 163/309 (52%), Gaps = 9/309 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76 HVP+LL + I LN GK+ +D T G G+SR K +I D+D A++ +E Sbjct: 4 KHVPILLNECIENLNIRDGKIYVDCTVGGAGHSREIAKRIGNGKLICFDQDEDALTVAKE 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +++Y ++ + F ++ + + G VDG++ D+GVSS QID RGFS+ L Sbjct: 64 RLKEYGDKVIFIKDNFKNIKSDLQNIGIEKVDGILMDIGVSSYQIDEDSRGFSYMHDAVL 123 Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + +A D+VN + +DL I+ EEK A RIA I R+ P TT +L Sbjct: 124 DMRMDQTNPITAKDIVNTYSQEDLENIIFKYSEEKWAKRIAEFICNEREVKPINTTFELV 183 Query: 193 SLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+K + + H A ++FQA+RI VN E++ L Q + L G + +++F Sbjct: 184 EVIEKAIPKKVRMNQKGHSAKKTFQAIRIEVNKELDVLEQAVGDCIDLLNPEGRICIITF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLED++ K F R + + H + IT+K + P+ E++ N R+RSA Sbjct: 244 HSLEDKICKDIFKQRQKGCICPPEIPVCVCNHKPEIKIITRKPIEPSTEELKQNSRARSA 303 Query: 310 KLRAGMRTV 318 KLR + + Sbjct: 304 KLRVAEKII 312 >gi|227874385|ref|ZP_03992569.1| S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Oribacterium sinus F0268] gi|227839793|gb|EEJ50239.1| S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Oribacterium sinus F0268] Length = 311 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 102/307 (33%), Positives = 166/307 (54%), Gaps = 9/307 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H +++E+ + LN + +D T G GG+S + +I +D+D A+ E Sbjct: 5 HKSIMVEECMEGLNIKKDGIYVDGTLGGGGHSFHILERLGEKGQLIGIDQDEDAILAATE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ + +Q + + + + + + VDG++ DLGVSS Q D +RGFS++ PL Sbjct: 65 RLKPFAKQLHIIRDNYEHFPEILSSLSIEKVDGILLDLGVSSHQFDEEERGFSYRFDAPL 124 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM SA D+VN + L I+ GE+K A IA IV RQ P +TT++L+ Sbjct: 125 DMRMDQRQDFSAKDLVNSYSESSLFHIIRDYGEDKFAKNIAKHIVLARQEKPIETTKELA 184 Query: 193 SLIQKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I + HPA R+FQA+RI +N E+E L L+S +AL GG + ++SFH Sbjct: 185 EIISHAIPMKFRLQGGHPAKRTFQAIRIALNRELEVLENSLKSMIEALNPGGRICIISFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK+ F + + + ++ + I++K + P++E++ N R++SAK Sbjct: 245 SLEDRIVKRSFKEAENPCICPPDFPVCTCGRKSLGKVISRKAICPSEEEMEENPRAKSAK 304 Query: 311 LRAGMRT 317 LR RT Sbjct: 305 LRIFERT 311 >gi|315147940|gb|EFT91956.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX4244] Length = 322 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 102/312 (32%), Positives = 168/312 (53%), Gaps = 11/312 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPFAVSCGQE 76 H VLL++ + L P V +D T G G+S ++ A D+D A++ + Sbjct: 11 HYTVLLKETVDGLQVKPDGVYVDCTLGGAGHSEYLLTQLNEHGHLYAFDQDQKALAHAKT 70 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++ Y K Q + ++ F +++ + + GV DG+++DLGVSS Q+D +RGFS+ + Sbjct: 71 RLQKYVDKGQVTFIKSNFRNIKEELAEHGVFHVDGILYDLGVSSPQLDEAERGFSYHQDA 130 Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM ++A +VVN + +L +I GEEK + +I I + R+ P +TT + Sbjct: 131 PLDMRMDQDAPLTAREVVNTYSYSELVKIFFRYGEEKFSKQITREIERVREKQPIETTGE 190 Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I+ + ++ HPA R FQA+RI VN+E+ + + L A L G + V++ Sbjct: 191 LVEIIKTAIPAPARRKGGHPAKRIFQAIRIAVNDELGAVEESLEQAIDLLAKNGRISVIT 250 Query: 250 FHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK F S + + + + IT+K ++P+ +++ N RSRS Sbjct: 251 FHSLEDRIVKTMFKEYSTVQDLPPGIPVVPEEFQPELKVITRKPILPSDSELSENNRSRS 310 Query: 309 AKLRAGMRTVER 320 AKLR + R Sbjct: 311 AKLRIAEKIKSR 322 >gi|39936600|ref|NP_948876.1| S-adenosyl-methyltransferase MraW [Rhodopseudomonas palustris CGA009] gi|42559427|sp|P60398|RSMH_RHOPA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|39650456|emb|CAE28979.1| Bacterial methyltransferase [Rhodopseudomonas palustris CGA009] Length = 332 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 149/332 (44%), Positives = 198/332 (59%), Gaps = 8/332 (2%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAV 71 + + H+PVL + + LL P G + +D TFGAGGY+R + GS VIA+DRDP A+ Sbjct: 1 MKPSDARHIPVLGPEAVGLLAPRAGGIYVDGTFGAGGYTRLILETAGSRVIAIDRDPSAI 60 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQ 128 + G + + + + +L Q FS L D +G VDGVV D+GVSSMQ+D +RGFSF+ Sbjct: 61 AGGADLVTEAGGRLTLVQDRFSNLADVCAAQGAATVDGVVMDIGVSSMQLDQAERGFSFR 120 Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM G SA+DVV +A+ DL I+ I GEE+ + +A AIV R P TT Sbjct: 121 FDGPLDMRMGRDGPSAADVVARASETDLANIIYIFGEERYSRHVARAIVAARSETPITTT 180 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 + L+ ++ K V +K IHPATR+FQ LRIFVN E++EL Q L +AE+ LK G L VV Sbjct: 181 KALADIVAKVV-RAKPGEIHPATRTFQGLRIFVNEELDELHQALDAAERVLKPSGRLAVV 239 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDR+VK F A RS RH+ F ++K+ +V +VA N R+RS Sbjct: 240 SFHSLEDRIVKTFLAERSKTGGGSRHLPEVAQAAPSFTLLSKRPIVAGDAEVAANPRARS 299 Query: 309 AKLRAGMRTVERSIEDDSFVHLPRLPTLSQFR 340 AKLR RT + LP PTL+ Sbjct: 300 AKLRGAERTESPAHAAGD---LPGWPTLASVM 328 >gi|229918544|ref|YP_002887190.1| S-adenosyl-methyltransferase MraW [Exiguobacterium sp. AT1b] gi|263447045|sp|C4L5T9|RSMH_EXISA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|229469973|gb|ACQ71745.1| S-adenosyl-methyltransferase MraW [Exiguobacterium sp. AT1b] Length = 310 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 110/308 (35%), Positives = 168/308 (54%), Gaps = 8/308 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74 + +H VL + I LN P V +D T G G+S K + A D+D A++ Sbjct: 1 MFEHETVLKMESIEGLNIKPDGVYVDCTLGGAGHSEEIAKRLTTGQLYAFDQDDVALAHA 60 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +E + Y+ + + ++ F L++ + +GV DGV+FDLGVSS Q+D +RGFS+ Sbjct: 61 KERLAPYEGRVTFIKSNFVHLKEELAQRGVTKVDGVLFDLGVSSPQLDEAERGFSYNYDA 120 Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S SA VVN+ + +L RI GEEK + +IA I + R P +TT + Sbjct: 121 PLDMRMDRSRDFSAYHVVNEWSFGELARIFFTYGEEKFSKQIARKIEQARADKPIETTFE 180 Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L LI++ + ++ HPA R+FQA+RI VN+E+ + ++ A L G + V++ Sbjct: 181 LVDLIKEAIPAPARRKGGHPAKRTFQAIRIAVNDELNVFDRAVQDAIDLLAVNGRICVIT 240 Query: 250 FHSLEDRLVKKFFASRSGKVM-AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+ K+ F RS + + IT+K +V ++ ++ NRRSRS Sbjct: 241 FHSLEDRICKQVFKERSQHPPLPPGLPVIPKEFEPELKLITRKPIVASEGELEDNRRSRS 300 Query: 309 AKLRAGMR 316 AKLR + Sbjct: 301 AKLRVAEK 308 >gi|160895291|ref|ZP_02076062.1| hypothetical protein CLOL250_02850 [Clostridium sp. L2-50] gi|156862984|gb|EDO56415.1| hypothetical protein CLOL250_02850 [Clostridium sp. L2-50] Length = 314 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 105/307 (34%), Positives = 176/307 (57%), Gaps = 9/307 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H VLL++ I LN P V +D T G G+SR K ++I +D+D A++ + Sbjct: 4 KHTSVLLDETIENLNIKPNGVYMDGTLGGAGHSREIAKRLGSDGHLIGIDQDGEAIATAK 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + +Y ++ ++ + + + + + VDG++ DLGVSS Q+D DRGF+++ P Sbjct: 64 ERLAEYGDRITVVRDNYQNFKSILDELNISQVDGILLDLGVSSYQLDNADRGFTYRVDAP 123 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM +A D+VN ++L IL GEE+ A IA+ IVK R++ +TT++L Sbjct: 124 LDMRMDDRQTKTAKDIVNGYTEQELFHILKEYGEERFAKSIAYHIVKYRENKEIETTEEL 183 Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 + +I+ ++ +N + HP+ ++FQA+RI +N+E+E L + LK GG L +++F Sbjct: 184 NDIIRGSIPAKVRNAQGHPSKQTFQAIRIELNHELEVLTNSIDGMIDCLKPGGRLCIITF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK F + + + + + IT+K ++PT+E++ N RS+SA Sbjct: 244 HSLEDRIVKNAFRKNENPCICPPNFPVCTCGRKSKGKVITRKPILPTEEEMEINSRSKSA 303 Query: 310 KLRAGMR 316 KLR + Sbjct: 304 KLRVFEK 310 >gi|260589610|ref|ZP_05855523.1| S-adenosyl-methyltransferase MraW [Blautia hansenii DSM 20583] gi|331083033|ref|ZP_08332152.1| ribosomal RNA small subunit methyltransferase H 2 [Lachnospiraceae bacterium 6_1_63FAA] gi|260539850|gb|EEX20419.1| S-adenosyl-methyltransferase MraW [Blautia hansenii DSM 20583] gi|330399770|gb|EGG79431.1| ribosomal RNA small subunit methyltransferase H 2 [Lachnospiraceae bacterium 6_1_63FAA] Length = 313 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 100/310 (32%), Positives = 173/310 (55%), Gaps = 9/310 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H VLLE+ + L P + +D T G GG+S + C+ ++I +D+D A++ Sbjct: 4 KHQSVLLEETVGNLRVKPDGIYVDGTLGGGGHSYAICQQLSAKGSLIGIDQDEAAINAAG 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 ++++KEQ ++ ++ + ++ + G VDG+V DLGVSS Q+D +RGF++++ P Sbjct: 64 NRLQEFKEQVTIIRSNYCNMKRELQKIGITSVDGIVLDLGVSSYQLDNSERGFTYREDVP 123 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + +A ++VN+ + +L RI+ GE+K A IA I RQ +TT +L Sbjct: 124 LDMRMDQRNPRTAKNIVNEYSENELYRIIRDYGEDKFAKNIAKHICMARQEKEIETTGEL 183 Query: 192 SSLIQKTVYFSKNN-RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I++ + HPA ++FQA+RI +N E++ L L + L G + +++F Sbjct: 184 IEIIKRAIPMKMRAVGGHPAKKTFQAIRIELNQELDVLRNSLDDMIELLNDQGRICIITF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK F + + + + IT+K ++P++E++ N+RS+SA Sbjct: 244 HSLEDRIVKTIFKRNENPCTCPPGFPVCVCGNQSKGKVITRKPILPSEEELEMNKRSKSA 303 Query: 310 KLRAGMRTVE 319 KLR R + Sbjct: 304 KLRVFERVKQ 313 >gi|229541208|ref|ZP_04430268.1| S-adenosyl-methyltransferase MraW [Bacillus coagulans 36D1] gi|229325628|gb|EEN91303.1| S-adenosyl-methyltransferase MraW [Bacillus coagulans 36D1] Length = 309 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 113/309 (36%), Positives = 171/309 (55%), Gaps = 10/309 (3%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74 + H VLL++ + L+ P + +D T G GG+S + G ++ A D+D A+ Sbjct: 1 MFQHKTVLLKETVDGLHIKPDGIYVDCTLGGGGHSAYLLQQLTGGHLYAFDQDETAIQHA 60 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +E + + + ++ F L+ + +GV DG+++DLGVSS Q+D +RGFS+Q Sbjct: 61 KEKFAHDQNRITFIKSNFRYLKSELNARGVQAVDGILYDLGVSSPQLDTPERGFSYQHDA 120 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + ++A +VVN+ + L RI GEEK + +IA I R P +TT + Sbjct: 121 PLDMRMDLDTPLTAYEVVNEWPYEKLVRIFFRYGEEKFSKQIARKIEASRAKKPIETTGE 180 Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ LI++ + ++ HPA R FQA+RI VN+E+ L A LK GG + V++ Sbjct: 181 LADLIKEAIPAPARRKGGHPAKRVFQAIRIAVNDELSAFETSLTDAISLLKPGGRVSVIT 240 Query: 250 FHSLEDRLVKKFFASRS--GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 FHSLEDR+ K S G + +IP P V + IT+K +VP E+V N RSR Sbjct: 241 FHSLEDRICKNILKEYSSAGDLPHGLPVIPKEYEP-VLKLITRKPIVPNDEEVGENNRSR 299 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 300 SAKLRIAEK 308 >gi|69244718|ref|ZP_00602982.1| methyltransferase [Enterococcus faecium DO] gi|257879362|ref|ZP_05659015.1| methyltransferase [Enterococcus faecium 1,230,933] gi|257881772|ref|ZP_05661425.1| methyltransferase [Enterococcus faecium 1,231,502] gi|257890188|ref|ZP_05669841.1| methyltransferase [Enterococcus faecium 1,231,410] gi|257893516|ref|ZP_05673169.1| methyltransferase [Enterococcus faecium 1,231,408] gi|260558804|ref|ZP_05830993.1| methyltransferase [Enterococcus faecium C68] gi|293553181|ref|ZP_06673818.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium E1039] gi|293560478|ref|ZP_06676970.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium E1162] gi|293568304|ref|ZP_06679628.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium E1071] gi|294621599|ref|ZP_06700764.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium U0317] gi|314937875|ref|ZP_07845191.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium TX0133a04] gi|314941366|ref|ZP_07848259.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium TX0133C] gi|314950125|ref|ZP_07853411.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium TX0082] gi|314951334|ref|ZP_07854388.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium TX0133A] gi|314992835|ref|ZP_07858236.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium TX0133B] gi|314997995|ref|ZP_07862890.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium TX0133a01] gi|68196309|gb|EAN10738.1| methyltransferase [Enterococcus faecium DO] gi|257813590|gb|EEV42348.1| methyltransferase [Enterococcus faecium 1,230,933] gi|257817430|gb|EEV44758.1| methyltransferase [Enterococcus faecium 1,231,502] gi|257826548|gb|EEV53174.1| methyltransferase [Enterococcus faecium 1,231,410] gi|257829895|gb|EEV56502.1| methyltransferase [Enterococcus faecium 1,231,408] gi|260075263|gb|EEW63576.1| methyltransferase [Enterococcus faecium C68] gi|291589016|gb|EFF20840.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium E1071] gi|291598764|gb|EFF29816.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium U0317] gi|291602591|gb|EFF32806.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium E1039] gi|291605626|gb|EFF35068.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium E1162] gi|313588007|gb|EFR66852.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium TX0133a01] gi|313592639|gb|EFR71484.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium TX0133B] gi|313596551|gb|EFR75396.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium TX0133A] gi|313599789|gb|EFR78632.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium TX0133C] gi|313642733|gb|EFS07313.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium TX0133a04] gi|313643566|gb|EFS08146.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium TX0082] Length = 319 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 107/313 (34%), Positives = 172/313 (54%), Gaps = 10/313 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H V+L++ + LN P V +D T G G+S ++ A D+D A+ Sbjct: 3 ETFQHYTVMLKETVDGLNIKPDGVYVDCTLGGAGHSEYLLSQLSSKGHLYAFDQDQKAID 62 Query: 73 CGQETMRDYKEQ--FSLFQATFSQLQDYVPDK--GVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + + Y EQ + +A F +L++ + + VDG+++DLGVSS Q+D +RGFS+ Sbjct: 63 HAKLRLASYVEQGMVTFIKANFRELEERLSEHVDKVDGILYDLGVSSPQLDEAERGFSYH 122 Query: 129 KSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + PLDMRM S +SA V+N+ + +L +I GEEK + +IA I + R++ P QT Sbjct: 123 QDAPLDMRMDQSAPLSAYHVINEYSYHELVKIFFRYGEEKFSKQIAREIERVRKTKPIQT 182 Query: 188 TQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T +L +I++ + ++ HPA R FQA+RI VN+E+ L A + LK G + Sbjct: 183 TGELVEIIKQVIPAPARRKGGHPAKRIFQAVRIAVNDELGAEEASLEQAIRLLKVNGRIS 242 Query: 247 VVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V++FHSLEDR+VK F S + + + + + IT+K ++P++E++ N R Sbjct: 243 VITFHSLEDRIVKSMFKEYSTVQDLPPGLPVIPDEFQPELKVITRKPILPSEEELTENNR 302 Query: 306 SRSAKLRAGMRTV 318 SRSAKLR + Sbjct: 303 SRSAKLRIAEKIR 315 >gi|154485082|ref|ZP_02027530.1| hypothetical protein EUBVEN_02805 [Eubacterium ventriosum ATCC 27560] gi|149734035|gb|EDM50154.1| hypothetical protein EUBVEN_02805 [Eubacterium ventriosum ATCC 27560] Length = 311 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 108/307 (35%), Positives = 174/307 (56%), Gaps = 9/307 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 HV VLL + I LN P + +D T G GG+S CK +I +D+D A+ + Sbjct: 4 KHVSVLLNETIDGLNINPDGIYVDGTLGGGGHSYEICKRLSDKGRLIGIDQDGEALEAAR 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E +++++++ +L ++ + ++ + D + VDG+V DLGVSS Q+D +RGFS++ P Sbjct: 64 ERLKEFEDKITLVRSNYCEIDTILKDLEIEKVDGIVLDLGVSSYQLDNLERGFSYKSDAP 123 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM +A+DVVN + +L RI+ GE+K A IA IV R+ P +TT +L Sbjct: 124 LDMRMDQRQNKTAADVVNNYSENELFRIIRDYGEDKFAKNIAKHIVMARKEKPLETTAEL 183 Query: 192 SSLIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 S +I+ ++ + HPA ++FQA+RI VN E+ L + L + L GG + V++F Sbjct: 184 SEIIKASIPMKFQAKGGHPAKKTFQAIRIEVNQELTVLKESLDTMIDHLNPGGRICVITF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+ K F + + + IT+K ++P++E++ N+RS+S+ Sbjct: 244 HSLEDRITKIKFRENENPCTCPPDFPVCVCGKVSKGKVITRKPIIPSEEEMTENKRSKSS 303 Query: 310 KLRAGMR 316 KLR R Sbjct: 304 KLRIFER 310 >gi|331269345|ref|YP_004395837.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum BKT015925] gi|329125895|gb|AEB75840.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum BKT015925] Length = 309 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 110/307 (35%), Positives = 170/307 (55%), Gaps = 9/307 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 +HVPVLLE+ I LN + +D T G G+S K +I +D+D A+ + Sbjct: 4 NHVPVLLEETIDSLNIKEDGIYVDCTLGGAGHSSHILKRLSKRGKLIGIDQDVNALKAAK 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E +++Y + F L + + + VDG++ DLGVSS Q+D +RGFS+ + Sbjct: 64 ERLKNY-DNVIYVHNNFYNLASVLDELNIEKVDGILMDLGVSSYQLDTAERGFSYMQDAM 122 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ ISA +VVN+ + ++L RI+ GEE+ A +IA AIVK+R+ P +TT DL Sbjct: 123 LDMRMNTEESISAYNVVNEYSEEELFRIIKEYGEERFARKIAKAIVKQREIEPVKTTLDL 182 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + HPA ++FQA+RI VN+E+E L + + K L G + V++FH Sbjct: 183 VKIIKNVIPMKFQQGGHPAKKTFQAIRIEVNHELEILNKTIEDGVKHLNLDGRISVITFH 242 Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK F + + V + IT+K + P++++ N RSRS+K Sbjct: 243 SLEDRIVKTKFKKLENPCTCPKEFPVCICGMKPVVKVITRKPLEPSEDEKENNSRSRSSK 302 Query: 311 LRAGMRT 317 LR + Sbjct: 303 LRVAQKI 309 >gi|327441162|dbj|BAK17527.1| predicted S-adenosylmethionine-dependent methyltransferase [Solibacillus silvestris StLB046] Length = 316 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 106/316 (33%), Positives = 168/316 (53%), Gaps = 9/316 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSC 73 + DH VLL++ + LN P + +D T G G+S +I D+D A+ Sbjct: 1 MFDHTTVLLKETVDGLNINPDGIYVDCTLGGAGHSEYLVQQLSEKGRLICFDQDTTAIEN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + DY ++ + F L++ + +DG+++DLGVSS Q+D +RGFS+ Sbjct: 61 AKVRLADYLDRVIFVHSNFRYLKEELHKLNIHQIDGILYDLGVSSPQLDTPERGFSYHHD 120 Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM + +SA VVN+ + ++L RI GEEK + ++A I + R+ AP +TT Sbjct: 121 APLDMRMDQTAELSAYHVVNEWSYENLVRIFFRYGEEKFSKQVARKIEQAREIAPVETTG 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L LI+ + ++ HPA R FQA+RI VN+E+ L A LK GG + V+ Sbjct: 181 QLVELIKDGIPAPARRKGGHPAKRIFQAIRIAVNDELGAAEDSLVDAIDLLKIGGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K F S + + + + +++K ++P+ E++A N RSR Sbjct: 241 TFHSLEDRLTKTLFKEASSLPDLPPGLPVIPEHMKPILKLVSRKPILPSDEELAANNRSR 300 Query: 308 SAKLRAGMRTVERSIE 323 SAKLR + ++ Sbjct: 301 SAKLRIAEKINDKGRG 316 >gi|329770446|ref|ZP_08261828.1| ribosomal RNA small subunit methyltransferase H [Gemella sanguinis M325] gi|328836569|gb|EGF86229.1| ribosomal RNA small subunit methyltransferase H [Gemella sanguinis M325] Length = 310 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 113/307 (36%), Positives = 170/307 (55%), Gaps = 8/307 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74 + H VLLE+ I LN + +D T G G+S K + A D+D A+ Sbjct: 1 MFKHYSVLLEEAIEGLNIKDDGIYVDCTLGGAGHSLEILKKLTTGKLYAFDQDNVALENA 60 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + +Y ++ ++ F L++ + ++ V DGV++DLGVSS Q+D +RGFS+ Sbjct: 61 KIKLSEYADKVVFIKSNFENLKEKLAEQNVYEVDGVLYDLGVSSPQLDTPERGFSYNYDT 120 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM ISA +VVN+ + DL RI GEEK + +IA I K+R+ AP +TT Sbjct: 121 RLDMRMDTDASISAYEVVNEYSYHDLVRIFYRYGEEKFSKQIARNIEKKRELAPIETTFQ 180 Query: 191 LSSLIQKTVYFSKNN-RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I++++ +K HPA R FQA+RI VNNE+ L A +K GG + V++ Sbjct: 181 LVDIIKESIPAAKRRTGGHPAKRVFQAIRIAVNNELSVFENSLEQAIDIVKVGGRISVIT 240 Query: 250 FHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+ K+ F S + K + I N + + IT+K + P+ +++ N RSRS Sbjct: 241 FHSLEDRICKQIFNSYAKNKEIPKNLPILPNESLSKLKLITRKPICPSDKELEENNRSRS 300 Query: 309 AKLRAGM 315 AKLR Sbjct: 301 AKLRVAE 307 >gi|332686267|ref|YP_004456041.1| rRNA small subunit methyltransferase H [Melissococcus plutonius ATCC 35311] gi|332370276|dbj|BAK21232.1| rRNA small subunit methyltransferase H [Melissococcus plutonius ATCC 35311] Length = 316 Score = 395 bits (1015), Expect = e-108, Method: Composition-based stats. Identities = 106/314 (33%), Positives = 172/314 (54%), Gaps = 11/314 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 +H VLL++ I LN P + +D T G GG+S+ ++ D+D A++ Sbjct: 3 ETFNHQTVLLKETINELNINPNGIYVDCTLGGGGHSQYLLSKLSEKGHLYVFDQDEMALT 62 Query: 73 CGQETMRDYKEQ--FSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSF 127 + + Y E+ + +A F L++ + + VDG+ +DLGVSS Q+D +RGFS+ Sbjct: 63 AASKRLAPYVEKQMVTFIKANFRLLKEKLFEKHVFQVDGIFYDLGVSSPQLDEAERGFSY 122 Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 PLDMRM S ++A ++VN + ++L ++ EEK + +IA I + R + Q Sbjct: 123 HHDAPLDMRMDQTSSLTAYEIVNHYSYENLVKVFFRYSEEKFSKQIAREIERVRLNQTIQ 182 Query: 187 TTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT +L +I+K + ++ HPA R FQA+RI VN+E+ + L A + L G + Sbjct: 183 TTGELVEIIKKVIPAPARRTGGHPAKRIFQAIRIAVNDELGAIEVSLEQAIELLNKNGRI 242 Query: 246 IVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 V++FHSLEDR+VK F S S K + + + + + ITKK ++P++E+ N Sbjct: 243 GVITFHSLEDRIVKNMFKSYSTPKDLPPGLPVVPEEYQPILKVITKKPIIPSEEEQKQNN 302 Query: 305 RSRSAKLRAGMRTV 318 RSRSAKLR + + Sbjct: 303 RSRSAKLRIAEKII 316 >gi|310828121|ref|YP_003960478.1| hypothetical protein ELI_2533 [Eubacterium limosum KIST612] gi|308739855|gb|ADO37515.1| hypothetical protein ELI_2533 [Eubacterium limosum KIST612] Length = 311 Score = 395 bits (1015), Expect = e-108, Method: Composition-based stats. Identities = 114/306 (37%), Positives = 169/306 (55%), Gaps = 9/306 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H VLL + + L P +D T G GG+S CK +I +D+D FA+ Sbjct: 5 HTTVLLHETVDGLMIRPDGTYVDGTLGGGGHSELICKRLSADGTLIGIDQDDFALDYAGR 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + Y + L + F L++ + + GV DG+++DLGVSS Q D RGFS+ GPL Sbjct: 65 RLAPYACRKQLVKNNFVHLKEVLGEAGVSQIDGIIYDLGVSSFQFDDETRGFSYHHDGPL 124 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + +SA +VVN + L ++L + GEE+ A RI +AI+K R++ P +TT +LS Sbjct: 125 DMRMDSGAELSAYEVVNAYPPERLKKVLQVYGEERFAGRIVNAIIKERETKPIETTLELS 184 Query: 193 SLIQKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 LI+ + HPA +SFQA+R+ VN+E++ L + +ALK GG + +++FH Sbjct: 185 ELIKAAYPAKERFKEKHPARKSFQAIRLEVNHELDILEDAFSAGIEALKPGGRMCIITFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK FF + + IT+K V+P E++ NRRSRSAK Sbjct: 245 SLEDRIVKHFFKDKQNPCTCPPEFPACVCGKKPEVRIITRKPVLPAPEEIEANRRSRSAK 304 Query: 311 LRAGMR 316 LR + Sbjct: 305 LRIAEK 310 >gi|302386836|ref|YP_003822658.1| S-adenosyl-methyltransferase MraW [Clostridium saccharolyticum WM1] gi|302197464|gb|ADL05035.1| S-adenosyl-methyltransferase MraW [Clostridium saccharolyticum WM1] Length = 312 Score = 395 bits (1015), Expect = e-108, Method: Composition-based stats. Identities = 108/311 (34%), Positives = 180/311 (57%), Gaps = 10/311 (3%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSC 73 + +H VLL + I LN P + +D T G GG++ CK +I +D+D A+ Sbjct: 2 MFEHKSVLLYETIDSLNVKPDGIYVDGTLGGGGHALEVCKRLGTYGRLIGIDQDGDAIKA 61 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 E ++DY+++ ++ ++ + +Q + D G VDG+ DLGVSS Q+D +RGF++++ Sbjct: 62 AAERLKDYEDKVTVVRSNYENIQTVLKDLGIEKVDGIYLDLGVSSYQLDKPERGFTYRED 121 Query: 131 -GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM + +A+D++N + DL RI+ GE+K A IA IV+ RQ P +TT Sbjct: 122 DAPLDMRMDQRNEQTAADIINSYSEFDLYRIIRDYGEDKFAKNIAKHIVRARQGKPIETT 181 Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L+ +I++ + + HP+ R+FQA+RI +N E+E L + L + L GG L + Sbjct: 182 GELTEIIKEAIPARVRAVGGHPSKRTFQAIRIELNKELEVLNKSLDTMIDLLNPGGRLSI 241 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 ++FHSLEDR+VK F + + + + + IT+K +VP++E++ N+RS Sbjct: 242 ITFHSLEDRMVKTRFRTNENPCICPSDFPVCVCGRKSKGKVITRKPIVPSEEEIEENKRS 301 Query: 307 RSAKLRAGMRT 317 +S+KLR R Sbjct: 302 KSSKLRVFERI 312 >gi|311029920|ref|ZP_07708010.1| S-adenosyl-methyltransferase MraW [Bacillus sp. m3-13] Length = 312 Score = 394 bits (1014), Expect = e-108, Method: Composition-based stats. Identities = 112/310 (36%), Positives = 175/310 (56%), Gaps = 11/310 (3%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + HV VLL + + LN +D T G G+S K +IA D+D A+ Sbjct: 1 MFHHVTVLLNEAVEGLNIKEDGTYVDCTLGGAGHSSEIVKQLSDKGRLIAFDQDDHALEH 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + +Y ++ ++ F L++ + ++G VDGV+FDLGVSS Q+D +RGFS+ Sbjct: 61 AKNVLHNYLDRVIFIKSNFKHLKEKLYEQGITKVDGVLFDLGVSSPQLDTPERGFSYHHE 120 Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM + +SA DVVN+ + + L RI GEEK + +IA I + R+S P +TT Sbjct: 121 APLDMRMDMNSPLSAYDVVNEWSYEKLVRIFFQYGEEKFSKQIARKIEEYRKSKPIETTL 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I+ + ++ HPA R FQA+RI VN+E+ + A LK GG + V+ Sbjct: 181 ELVEIIKDGIPAPARRTGGHPAKRVFQAIRIAVNDELGVFEDAIHQAIDVLKVGGRVSVI 240 Query: 249 SFHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 +FHSLEDR+ K F +S ++ +IP P + + IT+K ++P++E++ N R+ Sbjct: 241 TFHSLEDRMCKVAFKEKSQLPQLPPGLPIIPEEFQP-ILKLITRKPILPSEEELETNNRA 299 Query: 307 RSAKLRAGMR 316 RSAKLR + Sbjct: 300 RSAKLRIAEK 309 >gi|253681660|ref|ZP_04862457.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum D str. 1873] gi|253561372|gb|EES90824.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum D str. 1873] Length = 309 Score = 394 bits (1014), Expect = e-108, Method: Composition-based stats. Identities = 110/307 (35%), Positives = 172/307 (56%), Gaps = 9/307 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 +HVPVLLE+ I LN + +D T G G+S K +I +D+D A+ + Sbjct: 4 NHVPVLLEETIDSLNIKEDGIYVDCTLGGAGHSSYILKRLSKKGKLIGIDQDINALKAAK 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E +++Y + F L + + + VDG++ DLGVSS Q+D +RGFS+ + Sbjct: 64 EKLKNY-DNVIYVHNNFYNLASVLDELNIEKVDGILMDLGVSSYQLDTAERGFSYMQDAV 122 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ +SA ++VN+ + ++L RI+ GEE+ A +IA AIVK+R+ P +TT +L Sbjct: 123 LDMRMNTEESVSAYNIVNEYSEEELFRIIKEYGEERFARKIAKAIVKQREIEPVKTTLEL 182 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+K + HPA ++FQA+RI VN+E+E L + + K L + G + +++FH Sbjct: 183 VKIIKKVIPMKFQQGGHPAKKTFQAIRIEVNHELEILNKTIEDGVKHLNSHGRISIITFH 242 Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK F + I V + IT+K + P+QE+ N RS+S+K Sbjct: 243 SLEDRIVKNKFKELENPCTCPKEFPICICGMKPVVKVITRKPLEPSQEEKENNSRSKSSK 302 Query: 311 LRAGMRT 317 LR R Sbjct: 303 LRVAQRI 309 >gi|291525276|emb|CBK90863.1| S-adenosyl-methyltransferase MraW [Eubacterium rectale DSM 17629] Length = 314 Score = 394 bits (1014), Expect = e-108, Method: Composition-based stats. Identities = 98/309 (31%), Positives = 166/309 (53%), Gaps = 10/309 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H VL ++ I LN P + +D T G G+S K +I +D+D A+ Sbjct: 4 KHYSVLRDETIENLNIRPDGIYVDGTLGGAGHSYEIAKRLSDKGRLIGIDQDADAIKAAG 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK-SG 131 E + ++ ++ ++ ++ +S +++ + G VDG++ DLGVSS Q+D RGF+++ Sbjct: 64 ERLAEFGDRVTIVRSNYSDMKNVLHSLGIEKVDGIMLDLGVSSFQLDTPKRGFTYRSEDA 123 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + ++A D+VN + DL RI+ GE+K A IA IV RQ TT + Sbjct: 124 PLDMRMDDRNALTARDIVNTYSENDLYRIIRDYGEDKFAKNIAKHIVAARQKQEITTTGE 183 Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+ + + HP+ R++QA+RI +N+E++ L L L GG + +++ Sbjct: 184 LNEIIKAAIPQKVRATGGHPSKRTYQAIRIELNHELDVLRDSLDDMIDLLNPGGRICIIT 243 Query: 250 FHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK F + + + IT+K ++P+++++ N RS+S Sbjct: 244 FHSLEDRIVKSNFKKNENPCTCPPSFPVCVCGNKSKGTVITRKPILPSEKELEENSRSKS 303 Query: 309 AKLRAGMRT 317 AKLR + Sbjct: 304 AKLRVFEKN 312 >gi|169824308|ref|YP_001691919.1| S-adenosyl-methyltransferase [Finegoldia magna ATCC 29328] gi|263447055|sp|B0S0Y9|RSMH_FINM2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|167831113|dbj|BAG08029.1| S-adenosyl-methyltransferase [Finegoldia magna ATCC 29328] Length = 312 Score = 394 bits (1014), Expect = e-108, Method: Composition-based stats. Identities = 102/309 (33%), Positives = 165/309 (53%), Gaps = 9/309 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76 HVP+LL + I LN GK+ +D T G G+SR K +I D+D A+ ++ Sbjct: 4 KHVPILLNECIENLNIRDGKIYVDCTVGGAGHSREIAKRIGNGKLICFDQDEDALKVAKQ 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + ++ ++ + F +++ + + G VDG++ D+GVSS QID RGFS+ L Sbjct: 64 RLEEFGDKIIFIKDNFKNIKNDLHNLGIEKVDGILMDIGVSSYQIDEDSRGFSYMHDADL 123 Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S SA D+VN + +DL ++ +EK A RIA I R++ P TT +L Sbjct: 124 DMRMDQSNPISAKDIVNTYSKEDLENVIFKYSDEKWAKRIAEFICNARETKPINTTFELV 183 Query: 193 SLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+K + + H A ++FQA+RI VN E++ L Q + + L G + +++F Sbjct: 184 EVIEKAIPKKVRMNQKGHSAKKTFQAIRIEVNKELDVLEQAVGDSIDLLNPEGRICIITF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLED++ K F R + + H + IT+K + P++E++ N R+RSA Sbjct: 244 HSLEDKICKDIFRQRQKGCICPPEIPVCVCNHKPEIKIITRKPIEPSKEELEQNSRARSA 303 Query: 310 KLRAGMRTV 318 KLR + + Sbjct: 304 KLRVAEKII 312 >gi|20138864|sp|O07665|RSMH_ENTHR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|2624083|emb|CAA74239.1| mraW [Enterococcus hirae] Length = 319 Score = 394 bits (1013), Expect = e-108, Method: Composition-based stats. Identities = 108/314 (34%), Positives = 171/314 (54%), Gaps = 12/314 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H V+L++ + LN P + +D T G G+S ++ A D+D A+ Sbjct: 3 ETFQHYTVMLKETVDGLNIKPDGIYVDCTLGGAGHSEYLLSQLNTNGHLYAFDQDQKAID 62 Query: 73 CGQETMRDYKEQ--FSLFQATFSQLQDYVPDK--GVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + + Y E+ + +A F +L+ + + VDG+++DLGVSS Q+D +RGFS+ Sbjct: 63 HAKVRLAPYIEKGMVTFIKANFRELEAKIKEHVPQVDGILYDLGVSSPQLDEAERGFSYH 122 Query: 129 KSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + PLDMRM S +SA DVVN+ + +L +I GEEK + +IA I + R+ P QT Sbjct: 123 QDAPLDMRMDQSAPLSAYDVVNEYSYNELVKIFFRYGEEKFSKQIAREIERVRKIHPIQT 182 Query: 188 TQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T +L +I+ + ++ HPA R FQA+RI VN+E+ L A + LK G + Sbjct: 183 TGELVEIIKDVIPAPARRKGGHPAKRIFQAIRIAVNDELGAEEASLEQAIRLLKINGRIS 242 Query: 247 VVSFHSLEDRLVKKFFASRS--GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 V++FHSLEDR+VK F S + ++P P + I +K ++P++E+++ N Sbjct: 243 VITFHSLEDRIVKSMFKEYSTVQDLPPGLPVVPEEFQP-ELKLINRKPILPSEEELSENN 301 Query: 305 RSRSAKLRAGMRTV 318 RSRSAKLR + Sbjct: 302 RSRSAKLRIAEKIR 315 >gi|182626151|ref|ZP_02953911.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens D str. JGS1721] gi|177908588|gb|EDT71113.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens D str. JGS1721] Length = 310 Score = 394 bits (1013), Expect = e-108, Method: Composition-based stats. Identities = 110/307 (35%), Positives = 169/307 (55%), Gaps = 10/307 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 HV VLL++ I LN + +D T G G+S K +I D+D A+ Sbjct: 4 KHVSVLLDECINALNIKEDGIYVDCTLGGAGHSSEIVKRLSSDGRLIGFDQDKDALKAAG 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E ++DYK + + F + D + D GVDG++ DLGVSS Q+D G+RGFS+ + P Sbjct: 64 ERLKDYK-NVTYVHSNFYAIYDVLTDLGIDGVDGILMDLGVSSYQLDNGERGFSYMQDAP 122 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ + SA ++VN + ++L RI+ GEEK A RIA IVK R+ ++T +L Sbjct: 123 LDMRMNRENEFSAYEIVNTYSEEELYRIIKEYGEEKFAKRIASFIVKNREEKNIESTLEL 182 Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+ + + HPA R+FQA+RI VN E+E +++ + K L GG + +++F Sbjct: 183 VEIIKAAIPAKARREGPHPAKRTFQAIRIEVNKELEIISKTILDGVKKLNKGGRMAIITF 242 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK F + + + I++K + ++E++ FN RSRSA Sbjct: 243 HSLEDRIVKNTFKELANPCTCPSEFPVCVCNRKPEVKLISRKPIEASKEELEFNPRSRSA 302 Query: 310 KLRAGMR 316 KLR + Sbjct: 303 KLRIIEK 309 >gi|304317210|ref|YP_003852355.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778712|gb|ADL69271.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 310 Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 107/305 (35%), Positives = 160/305 (52%), Gaps = 8/305 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76 H VLL + I L P V +D T G GG+S + +IA+DRD A+ Sbjct: 4 KHESVLLNETIEYLKVKPDGVYVDGTLGGGGHSYEILRRLPRGRLIAIDRDMDALYAASV 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++D+ + + +++ + + + DG + DLGVSS Q+D RGFS+ PL Sbjct: 64 RLKDF-NNVTYVHDNYKNIKNILKNIDIERIDGAILDLGVSSYQLDEVKRGFSYMHDAPL 122 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S ++A VVN + D+ RIL GEEK A RIA IV+ R+ +TT L Sbjct: 123 DMRMDKGSALTAEHVVNNYSEDDIARILFDYGEEKWAKRIAKFIVEERKKRSIKTTFQLV 182 Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+K V + HPA R+FQA+RI VN+E++ L + + G + +++FH Sbjct: 183 DIIKKAVPASKRRTGPHPAKRTFQAIRIEVNDELKGLDSAIDDFIDVMNPNGRIAIITFH 242 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+VK + +++ + V + ITKK V P +E++ N RSRSAKL Sbjct: 243 SLEDRIVKNMYKKLENPCTCPKNLPCTCGKKPVIKIITKKPVTPNKEELKTNPRSRSAKL 302 Query: 312 RAGMR 316 R + Sbjct: 303 RVAEK 307 >gi|300768848|ref|ZP_07078742.1| S-adenosyl-methyltransferase MraW [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300493581|gb|EFK28755.1| S-adenosyl-methyltransferase MraW [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 319 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 118/313 (37%), Positives = 170/313 (54%), Gaps = 13/313 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVS 72 +H VLL + IA LN P + +D T G GG+SR + +G ++ + D+D A+ Sbjct: 2 ATFEHTTVLLHEAIAALNVRPDGIYVDCTLGGGGHSREILQQLGLGGHLYSFDQDQTAID 61 Query: 73 CGQETMRDYKEQ--FSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSF 127 Q + Y E+ + ++ F+ L+ + +G VDGVV+DLGVSS Q D RGFS+ Sbjct: 62 YNQSNLATYLERGQVTFIKSNFANLKTELNARGLDHVDGVVYDLGVSSPQFDDAARGFSY 121 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 Q PLDMRM S ++A VVN DL RI GEEK + ++A I + R P Sbjct: 122 QHDAPLDMRMDQSQKLTAQTVVNTWPYADLVRIFYRYGEEKFSKQVARLIERERAVQPIV 181 Query: 187 TTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT L +I+ + + HPA R FQA+RI VNNE+ L L A + G + Sbjct: 182 TTGQLVEIIKNAIPARARRTGGHPAKRVFQAIRIAVNNELGVLETSLEQAIDLINVHGRV 241 Query: 246 IVVSFHSLEDRLVKKFFASRS--GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 V++F SLEDRLVK F S ++ +IP+ P ++ +++K VVP+ ++ N Sbjct: 242 SVITFQSLEDRLVKTIFKEHSDLPELPPGLPVIPAEMQP-DYRLVSRKPVVPSDAEIEAN 300 Query: 304 RRSRSAKLRAGMR 316 RR+RSAKLRA R Sbjct: 301 RRARSAKLRAIER 313 >gi|313123436|ref|YP_004033695.1| s-adenosyl-l-methionine-dependent methyltransferase mraw [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312279999|gb|ADQ60718.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 314 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 106/310 (34%), Positives = 167/310 (53%), Gaps = 12/310 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76 H VLL + I L P G +DATFG GG++R N+I D+D +A+ Q Sbjct: 4 KHTSVLLHETIDNLAPQSGGTYVDATFGGGGHARYLLSKLDKGNLIGFDQDQYAIDTAQS 63 Query: 77 TMRDY-----KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + + + L FS L++ + G+DG+ +DLGVSS Q+D +RGFS++ Sbjct: 64 NFAAFLKEDSQPRLQLVHNNFSHLKEELAKLGISGIDGIYYDLGVSSPQLDQAERGFSYR 123 Query: 129 KSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 LDMRM S A +VNQ + K L +L G+EK + +IA IV+RR+ P +T Sbjct: 124 FDARLDMRMDQSQDFDAYQLVNQYDQKQLADVLYRYGDEKFSRQIARKIVERRRVKPIET 183 Query: 188 TQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T +L +I++ + + + + HPA +SFQA+R+ VN+E++ L L A L GG + Sbjct: 184 TFELVEIIKEAIPAAARRSGGHPAKKSFQAIRVEVNHELDVLRASLEEAISLLNPGGRIS 243 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V++F SLED++VK+ F S + + + + +K + ++E++A N RS Sbjct: 244 VITFQSLEDKIVKQTFKKYSEVEIPRGMPVVPEGIKPTLRLVNRKPITASEEELAENNRS 303 Query: 307 RSAKLRAGMR 316 SAKLR + Sbjct: 304 HSAKLRVAEK 313 >gi|331090606|ref|ZP_08339457.1| ribosomal RNA small subunit methyltransferase H 2 [Lachnospiraceae bacterium 2_1_46FAA] gi|330401046|gb|EGG80641.1| ribosomal RNA small subunit methyltransferase H 2 [Lachnospiraceae bacterium 2_1_46FAA] Length = 311 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 106/309 (34%), Positives = 169/309 (54%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSC 73 +H VLLE+ + LN P + +D T G GG++ CK S+ I +D+D A+ Sbjct: 2 TFEHKSVLLEETVNGLNIKPDGIYVDGTLGGGGHAFEVCKQLSDKGSFIGIDQDEAAIEA 61 Query: 74 GQETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +RD+ E+ ++ ++ + ++ + VDG+V DLGVSS Q+D +RGFS++ Sbjct: 62 AGIRLRDFGERVTIVRSNYCDMKLQLQKLGIDKVDGIVLDLGVSSYQLDTAERGFSYRVD 121 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM ++A D+VN + +L RI+ GE+K A IA IV R+ +TT Sbjct: 122 VPLDMRMDRRQEMTAKDIVNTYSEMELYRIIRDYGEDKFAKNIAKHIVLEREKGSIETTG 181 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L +I++ + + N HPA R+FQA+RI +N E++ L L L G + ++ Sbjct: 182 QLIEIIKRAIPMKFQKNGGHPAKRTFQAIRIELNRELDVLRDSLDEMIDMLNENGRICII 241 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+VK F H + + + + IT+K ++P+ E++ +N RS+ Sbjct: 242 TFHSLEDRIVKSIFRRNENPCTCPSHFPVCVCGNESKGKVITRKPILPSAEELEYNSRSK 301 Query: 308 SAKLRAGMR 316 SAKLR R Sbjct: 302 SAKLRIFER 310 >gi|146295951|ref|YP_001179722.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor saccharolyticus DSM 8903] gi|263446954|sp|A4XHZ6|RSMH_CALS8 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|145409527|gb|ABP66531.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 307 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 121/309 (39%), Positives = 187/309 (60%), Gaps = 10/309 (3%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSC 73 + +H+PVLLE+ + L P + +DATFG GG+S+ + S+ ++A+D+D A+ Sbjct: 1 MYEHIPVLLEESTSYLVTKPDGIYVDATFGLGGHSKKILEKLSSNGFLVAIDKDEEAIEL 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 G+E + + + FS+L + + +DG++FDLGVSS+Q+D +RGFS+ Sbjct: 61 GKEKFKKC-NNIKIVHSPFSRLDEVLNFLKIDKIDGILFDLGVSSLQLDKPERGFSYNSD 119 Query: 131 GPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM S ++A DVVN+ + K+L RI+ GEE+ A +IA IVKRR+ P TT+ Sbjct: 120 SFLDMRMDKTSKLTAYDVVNKYSEKELERIIREYGEERYAKKIAKEIVKRREQKPITTTK 179 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 +L+ LI V K+ +PA R+FQA+RI VN E+EE+ L + + LK+GG + V+S Sbjct: 180 ELNDLINSVVPRPKDG-SNPAKRTFQAIRIEVNGELEEIKVALEKSIRFLKSGGRICVIS 238 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK+FF S + + + + +TKK + PT+E++ N+RS S Sbjct: 239 FHSLEDRIVKEFFKYHSLECICPKDIPVCVCGKKKELNILTKKPITPTKEEIERNKRSHS 298 Query: 309 AKLRAGMRT 317 AKLR + Sbjct: 299 AKLRVAEKI 307 >gi|315026965|gb|EFT38897.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX2137] Length = 322 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 102/312 (32%), Positives = 168/312 (53%), Gaps = 11/312 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPFAVSCGQE 76 H VLL++ + L P V +D T G G+S ++ A D+D A++ + Sbjct: 11 HYTVLLKETVDGLQVKPDGVYVDCTLGGAGHSEYLLTQLNEHGHLYAFDQDQKALAHAKT 70 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++ Y K Q + ++ F +++ + + GV DG+++DLGVSS Q+D +RGFS+ + Sbjct: 71 RLQKYVDKGQVTFIKSNFRNIKEELAEHGVFHVDGILYDLGVSSPQLDEAERGFSYHQDA 130 Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM ++A +V N + +L +I GEEK + +IA I + R+ P +TT + Sbjct: 131 PLDMRMDQDAPLTAREVGNTYSYSELVKIFFRYGEEKFSKQIAREIERVREKQPIETTGE 190 Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I+ + ++ HPA R FQA+RI VN+E+ + + L A L G + V++ Sbjct: 191 LVEIIKTAIPAPARRKGGHPAKRIFQAIRIAVNDELGAVEESLEQAIDLLAKNGRISVIT 250 Query: 250 FHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK F S + + + + IT+K ++P+ +++ N RSRS Sbjct: 251 FHSLEDRIVKTMFKEYSTVQDLPPGIPVVPEEFQPELKVITRKPILPSDSELSENNRSRS 310 Query: 309 AKLRAGMRTVER 320 AKLR + R Sbjct: 311 AKLRIAEKIKSR 322 >gi|295706376|ref|YP_003599451.1| S-adenosyl-methyltransferase MraW [Bacillus megaterium DSM 319] gi|294804035|gb|ADF41101.1| S-adenosyl-methyltransferase MraW [Bacillus megaterium DSM 319] Length = 311 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 114/312 (36%), Positives = 178/312 (57%), Gaps = 11/312 (3%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSC 73 + +H VLL++ LN P V +D T G G+S +IA D+D A++ Sbjct: 1 MFNHTTVLLKEAAEGLNIKPDGVYVDCTLGGAGHSEYIVKQLSEKGKLIAFDQDDVALAN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E + Y ++ L ++ F L++ + + G VDGV+FDLGVSS Q+D +RGFSF Sbjct: 61 AKEKLAPYLDRVILIKSNFRYLKEQLMEHGIEEVDGVLFDLGVSSPQLDTPERGFSFHHD 120 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM + + SA +VVN+ + L +I GEEK + +IA I R+S P +TT Sbjct: 121 APLDMRMDQNSMFSAYNVVNEWPYEKLVKIFFQYGEEKFSKQIARKIEAYRESKPIETTL 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L LI+ + ++ HPA R FQA+RI VN+E++ + A +K GG + V+ Sbjct: 181 ELVDLIKDGIPAPARRTGGHPAKRIFQAIRIAVNDELQVFEDAIEQAMDVIKKGGRVSVI 240 Query: 249 SFHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 +FHSLEDR+ K F + S ++ +IP P + + IT+K ++P++E++ N+R+ Sbjct: 241 TFHSLEDRICKVAFKNASTVPQLPHGLPIIPEEFKPKM-KVITRKPILPSEEEIEENKRA 299 Query: 307 RSAKLRAGMRTV 318 RSAKLR + V Sbjct: 300 RSAKLRIVEKLV 311 >gi|153814616|ref|ZP_01967284.1| hypothetical protein RUMTOR_00830 [Ruminococcus torques ATCC 27756] gi|145848110|gb|EDK25028.1| hypothetical protein RUMTOR_00830 [Ruminococcus torques ATCC 27756] Length = 311 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 103/307 (33%), Positives = 170/307 (55%), Gaps = 9/307 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 +HV VLL + + LN V +DAT G GG++ C+ I +D+D A+ Sbjct: 4 EHVSVLLNETVDGLNVKLDGVYVDATLGGGGHAYEVCRRLGSKGRFIGIDQDADAIKAAG 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E ++ + E+ ++ ++ + ++ + + GVD G+V DLGVSS Q+D +RGFS++ P Sbjct: 64 ERLKGFGEKVTIIRSNYRDMKPQLQNIGVDKVDGIVIDLGVSSYQLDTAERGFSYRVDAP 123 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM ++A D+VN+ + +L R++ GE+K A IA IV R+ P +TT L Sbjct: 124 LDMRMDQRQKMTARDIVNEYSESELYRVIRDYGEDKFAKNIAKHIVAERRKNPIETTGQL 183 Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 + +I + + HP+ R+FQA+RI +N+E++ L + L + L GG + +++F Sbjct: 184 NEIISHAIPMKFRKTSGHPSKRTFQAIRIELNHELDVLRESLDDMIEMLNPGGRICIITF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK F H + + + IT+K ++P++ + N RS+SA Sbjct: 244 HSLEDRIVKSAFRKNENPCTCPSHFPVCVCGKISKGKVITRKPILPSEAETESNSRSKSA 303 Query: 310 KLRAGMR 316 KLR R Sbjct: 304 KLRIFER 310 >gi|296133667|ref|YP_003640914.1| S-adenosyl-methyltransferase MraW [Thermincola sp. JR] gi|296032245|gb|ADG83013.1| S-adenosyl-methyltransferase MraW [Thermincola potens JR] Length = 319 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 111/316 (35%), Positives = 178/316 (56%), Gaps = 9/316 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 HVPV+L++ I+ LN P + +D T G G+S K ++ +D+D A++ G+ Sbjct: 4 HHVPVMLDESISHLNIKPDGIYVDCTLGGAGHSAEILKKIQPNGFLVGIDQDINAIAAGE 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +++ + L + F++++D + + G VDGV+FDLGVSS Q+D RGFS++ P Sbjct: 64 KRLKNIGSNYRLVHSNFNRIRDILEELGIYRVDGVLFDLGVSSYQLDQIQRGFSYKVDAP 123 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ ++A +VN +L +I+ GEE+ A RIA IV+ R TT L Sbjct: 124 LDMRMNPLEPVTARILVNGLTEDELAKIISEYGEERWARRIAKFIVEARAREEISTTGQL 183 Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+ V ++ HPA R+FQALRI VN+E+ + LR A + L GG + V+SF Sbjct: 184 VEIIKNAVPAGARKEGPHPAKRTFQALRIAVNDELNKFKSALRDAIEVLAPGGRICVISF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+ K+ F + + + + + + + IT K + P+ ++ N R+RSA Sbjct: 244 HSLEDRITKEMFRDLAKECVCPPEFPVCTCGTVPMLKIITNKPIEPSAAEIERNPRARSA 303 Query: 310 KLRAGMRTVERSIEDD 325 KLR R V ++ E + Sbjct: 304 KLRVAERLVLKNGEAE 319 >gi|322384129|ref|ZP_08057847.1| S-adenosyl-methyltransferase MraW-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321151209|gb|EFX44518.1| S-adenosyl-methyltransferase MraW-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 317 Score = 393 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 104/315 (33%), Positives = 178/315 (56%), Gaps = 15/315 (4%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSC 73 + H+ VL E+ + L+ P + +D T G G+S ++ALD+D A++ Sbjct: 1 MFHHITVLKEEAVEGLDIKPDGLYVDCTLGGAGHSVRIASQLSKEGLLLALDQDASALAN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVP---------DKGVDGVVFDLGVSSMQIDCGDRG 124 Q + +Y+++ + + F +L+ + VDG++FDLGVSS Q+D +RG Sbjct: 61 AQNVLAEYEDRVRIVKTNFRELKHVLQLEPRTVKNGTPQVDGILFDLGVSSPQLDEAERG 120 Query: 125 FSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 FS+ LDMRM S ++A +VN+ +++ RIL + GEEK + +IA +IVK R++ Sbjct: 121 FSYNHDAELDMRMDRSSPLTAKTIVNEWAPEEIARILFVYGEEKFSRKIASSIVKARENK 180 Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 +TT +L +I++ + + + + HPA RSFQALRI VN+E+ L A + L G Sbjct: 181 TIETTGELVEIIKQAIPAAARRSGPHPAKRSFQALRIAVNDELGAFENALEQAIECLAPG 240 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVA 301 G + V++FHSLEDR+ K+ FA GK + + ++ + + +K + +++++A Sbjct: 241 GRVAVITFHSLEDRICKQMFAKFVGKCTCPPDFPMCVCNNKSILKLVNRKPITASEKELA 300 Query: 302 FNRRSRSAKLRAGMR 316 +N R+RSAKLR + Sbjct: 301 YNPRARSAKLRIAEK 315 >gi|291529266|emb|CBK94852.1| S-adenosyl-methyltransferase MraW [Eubacterium rectale M104/1] Length = 314 Score = 393 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 98/309 (31%), Positives = 166/309 (53%), Gaps = 10/309 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H VL ++ I LN P + +D T G G+S K +I +D+D A+ Sbjct: 4 KHYSVLRDETIENLNIRPDGIYVDGTLGGAGHSYEIAKRLSDKGRLIGIDQDADAIKAAG 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK-SG 131 E + ++ ++ ++ ++ +S +++ + G VDG++ DLGVSS Q+D RGF+++ Sbjct: 64 ERLAEFGDRVTIVRSNYSDMKNVLHSLGIEKVDGIMLDLGVSSFQLDTPKRGFTYRSEDA 123 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + ++A D+VN + DL RI+ GE+K A IA IV RQ TT + Sbjct: 124 PLDMRMDDRNALTARDIVNTYSENDLYRIIRDYGEDKFAKNIAKHIVAARQKQEITTTGE 183 Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+ + + HP+ R++QA+RI +N+E++ L L L GG + +++ Sbjct: 184 LNEIIKAAIPKKVRATGGHPSKRTYQAIRIELNHELDVLRDNLDDMIDLLNPGGRICIIT 243 Query: 250 FHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK F + + + IT+K ++P+++++ N RS+S Sbjct: 244 FHSLEDRIVKSNFKKNENPCTCPPSFPVCVCGNKSKGTVITRKPILPSEKELEENSRSKS 303 Query: 309 AKLRAGMRT 317 AKLR + Sbjct: 304 AKLRVFEKN 312 >gi|167461086|ref|ZP_02326175.1| hypothetical protein Plarl_00698 [Paenibacillus larvae subsp. larvae BRL-230010] Length = 317 Score = 393 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 104/315 (33%), Positives = 177/315 (56%), Gaps = 15/315 (4%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSC 73 + H+ VL E+ + L+ P + +D T G G+S ++ALD+D A++ Sbjct: 1 MFHHITVLKEEAVEGLDIKPDGLYVDCTLGGAGHSVRIASQLSKEGLLLALDQDASALAN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVP---------DKGVDGVVFDLGVSSMQIDCGDRG 124 Q + +Y+++ + + F +L+ + VDG++FDLGVSS Q+D +RG Sbjct: 61 AQNVLAEYEDRVRIVKTNFRELKHVLQLEPRTVKNGTPQVDGILFDLGVSSPQLDEAERG 120 Query: 125 FSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 FS+ LDMRM S ++A +VN+ +++ RIL + GEEK + +IA +IVK R++ Sbjct: 121 FSYNHDAELDMRMDRSSPLTAKTIVNEWAPEEIARILFVYGEEKFSRKIASSIVKARENK 180 Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 +TT +L +I++ + + + + HPA RSFQALRI VN+E+ L A + L G Sbjct: 181 TIETTGELVEIIKQAIPAAARRSGPHPAKRSFQALRIAVNDELGAFENALEQAIECLAPG 240 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVA 301 G + V++FHSLEDR+ K+ FA GK + + + + + +K + +++++A Sbjct: 241 GRVAVITFHSLEDRICKQMFAKFVGKCTCPPDFPMCVCNNKGILKLVNRKPITASEKELA 300 Query: 302 FNRRSRSAKLRAGMR 316 +N R+RSAKLR + Sbjct: 301 YNPRARSAKLRIAEK 315 >gi|293376042|ref|ZP_06622295.1| S-adenosyl-methyltransferase MraW [Turicibacter sanguinis PC909] gi|325844610|ref|ZP_08168253.1| S-adenosyl-methyltransferase MraW [Turicibacter sp. HGF1] gi|292645343|gb|EFF63400.1| S-adenosyl-methyltransferase MraW [Turicibacter sanguinis PC909] gi|325489035|gb|EGC91422.1| S-adenosyl-methyltransferase MraW [Turicibacter sp. HGF1] Length = 310 Score = 393 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 107/309 (34%), Positives = 172/309 (55%), Gaps = 10/309 (3%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74 + +H VLL + I L + +D T G GG+S K ++ + D+D FA+ Sbjct: 1 MFNHYSVLLRESIENLEIKEDGIYVDCTLGGGGHSSEILKRLTTGHLYSFDQDSFAIENA 60 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +++ + F++ ++ F L++ + +GV DG++FDLGVSS Q D +RGFS+ Sbjct: 61 TKRLKEIGDNFTIIKSNFVHLKEELNARGVMKIDGIIFDLGVSSPQFDTPERGFSYNHDA 120 Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM +SA ++VN+ K+L I + +EK + +IA AI + R+ P +TT + Sbjct: 121 KLDMRMDQEAELSAYEIVNEWEYKNLEYIFRVYSDEKFSKQIARAIERYREKQPIETTFE 180 Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I+ + ++ HPA R+FQALRI VN+E++ + L+ A L G + V++ Sbjct: 181 LVEIIKSAIPAPARRKGGHPAKRTFQALRIAVNDELKVFEKALKDAMDMLNVEGRVAVIT 240 Query: 250 FHSLEDRLVKKFFASRS--GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 FHSLEDR+ K F RS + +IP P F+ IT+K +V + ++ N RS Sbjct: 241 FHSLEDRICKHMFKERSEAKDLPRGLPVIPQEFQP-EFKLITRKPIVADETELTENNRSH 299 Query: 308 SAKLRAGMR 316 SAKLR M+ Sbjct: 300 SAKLRVAMK 308 >gi|153953806|ref|YP_001394571.1| S-adenosyl-methyltransferase MraW [Clostridium kluyveri DSM 555] gi|219854422|ref|YP_002471544.1| hypothetical protein CKR_1079 [Clostridium kluyveri NBRC 12016] gi|263447433|sp|B9E0V5|RSMH_CLOK1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|146346687|gb|EDK33223.1| MraW [Clostridium kluyveri DSM 555] gi|219568146|dbj|BAH06130.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 309 Score = 393 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 114/307 (37%), Positives = 172/307 (56%), Gaps = 9/307 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 H+PVLL++ I LN V +D T G GG+S K S+ +IA+D+D A++ + Sbjct: 4 KHIPVLLKETIDSLNIKQDGVYVDCTLGGGGHSLEILKRLSDKGKLIAIDQDISAINWSE 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E ++++K F +Q + + VDG++ DLGVSS Q+D G RGFS+ K P Sbjct: 64 ERLKNFK-NIIYVHDNFYNIQQILKELKIDKVDGIIMDLGVSSYQLDEGKRGFSYMKDAP 122 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ S +SA ++VNQ N ++L RI+ GEE + RI+ IVK R+ +P TT L Sbjct: 123 LDMRMNRDSSLSAYEIVNQYNEEELCRIIRDYGEENFSRRISKFIVKAREESPISTTLQL 182 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+K + HPA R+FQA+RI VN E++ L + + L GG + +++FH Sbjct: 183 VGIIKKAIPLKFQKEGHPAKRTFQAIRIEVNEELKILDKAVEDGVANLNTGGRIAIITFH 242 Query: 252 SLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR++K F I + + + KK +VPT+E+ + N RS+S+K Sbjct: 243 SLEDRIIKSKFKMLENPCTCPADFPICICGKKPIVKIVNKKPIVPTEEEKSINPRSKSSK 302 Query: 311 LRAGMRT 317 LR R Sbjct: 303 LRIAERI 309 >gi|238924611|ref|YP_002938127.1| S-adenosyl-methyltransferase MraW [Eubacterium rectale ATCC 33656] gi|263433305|sp|C4ZD30|RSMH2_EUBR3 RecName: Full=Ribosomal RNA small subunit methyltransferase H 2; AltName: Full=16S rRNA m(4)C1402 methyltransferase 2; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH 2 gi|238876286|gb|ACR75993.1| S-adenosyl-methyltransferase MraW [Eubacterium rectale ATCC 33656] Length = 314 Score = 393 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 98/309 (31%), Positives = 166/309 (53%), Gaps = 10/309 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H VL ++ I LN P + +D T G G+S K +I +D+D A+ Sbjct: 4 KHYSVLRDETIENLNIRPDGIYVDGTLGGAGHSYEIAKRLSDKGRLIGIDQDADAIKAAG 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK-SG 131 E + ++ ++ ++ ++ +S +++ + G VDG++ DLGVSS Q+D RGF+++ Sbjct: 64 ERLAEFGDRVTIVRSNYSDMKNVLHSLGIEKVDGIMLDLGVSSFQLDTPKRGFTYRSEDA 123 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + ++A D+VN + DL RI+ GE+K A IA IV RQ TT + Sbjct: 124 PLDMRMDDRNALTARDIVNTYSENDLYRIIRDYGEDKFAKNIAKHIVAARQKQEITTTGE 183 Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+ + + HP+ R++QA+RI +N+E++ L L L GG + +++ Sbjct: 184 LNEIIKAAIPQKVRATGGHPSKRTYQAIRIELNHELDVLRDNLDDMIDLLNPGGRICIIT 243 Query: 250 FHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK F + + + IT+K ++P+++++ N RS+S Sbjct: 244 FHSLEDRIVKSNFKKNENPCTCPPSFPVCVCGNKSKGTVITRKPILPSEKELEENSRSKS 303 Query: 309 AKLRAGMRT 317 AKLR + Sbjct: 304 AKLRVFEKN 312 >gi|270291462|ref|ZP_06197684.1| methylase MraW [Pediococcus acidilactici 7_4] gi|304385176|ref|ZP_07367522.1| S-adenosyl-methyltransferase MraW [Pediococcus acidilactici DSM 20284] gi|270280308|gb|EFA26144.1| methylase MraW [Pediococcus acidilactici 7_4] gi|304329370|gb|EFL96590.1| S-adenosyl-methyltransferase MraW [Pediococcus acidilactici DSM 20284] Length = 317 Score = 393 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 116/316 (36%), Positives = 179/316 (56%), Gaps = 13/316 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72 T H VLLE+ +A LN V +D T G GG+S+ ++ + D+D A+ Sbjct: 2 TEFKHTTVLLEETVAGLNIRKDGVYVDCTLGGGGHSQLILSKLGSTGHLYSFDQDQTAID 61 Query: 73 CGQETMRDY--KEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSF 127 Q+ + Y +Q + +A F L++ + +G VDG+++DLGVSS Q D RGFS+ Sbjct: 62 YNQDHLAPYIANQQVTFIKANFRNLKNELNQRGIDHVDGILYDLGVSSPQFDDAQRGFSY 121 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + PLDMRM S ++A VVN+ + DL RI GEEK A ++A I K R+ P Sbjct: 122 RYDAPLDMRMDQSQELTAQAVVNEWSYNDLVRIFFRYGEEKYAKQVARRIEKVREQHPIV 181 Query: 187 TTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT +L +I++ + + + HPA R FQA+RI VN+E+ L + L A L G + Sbjct: 182 TTGELVEIIKEAIPAAARRTGGHPAKRVFQAIRIAVNDELGALEESLEQALDLLNDNGRI 241 Query: 246 IVVSFHSLEDRLVKKFFASRS--GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 V++F SLEDRLVK+ F ++ G + A +IP++ P F+ + +K +VP+++++ N Sbjct: 242 SVITFQSLEDRLVKRMFKEKTEIGDLPAGLPVIPADKKPH-FKLVNRKPIVPSEDELKEN 300 Query: 304 RRSRSAKLRAGMRTVE 319 RR+ SAKLR + E Sbjct: 301 RRAHSAKLRIIEKLQE 316 >gi|229104481|ref|ZP_04235148.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus Rock3-28] gi|228678923|gb|EEL33133.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus Rock3-28] Length = 310 Score = 393 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 111/309 (35%), Positives = 170/309 (55%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73 + HV VLL++ + L+ P +D T G GG+S G +IA D+D A+ Sbjct: 1 MFKHVTVLLKETVDGLDIKPDGTYVDCTLGGGGHSSYLLSQLTDGGKLIAFDQDEIAIQN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E Y EQF ++ F L + + + G VDG++FDLGVSS Q+D +RGFS+ Sbjct: 61 AKEKFSSYGEQFITVKSNFRYLSEKLQELGITEVDGILFDLGVSSPQLDTPERGFSYHHD 120 Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM ++A DV+N + + L RI GEEK + +IA I R++ +TT Sbjct: 121 APLDMRMDQDAPLTAYDVINSWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTG 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L LI++ + ++ HPA R FQA+RI VN+E++ + L SA + +K GG + V+ Sbjct: 181 ELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRVSVI 240 Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F S + I + + IT+K ++P+ ++ N R+R Sbjct: 241 TFHSLEDRICKTTFKRNSTTPPLPPGLPIIPDEFKPKLKLITRKPILPSDIELEENNRAR 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRIAEK 309 >gi|149181747|ref|ZP_01860239.1| S-adenosyl-methyltransferase MraW [Bacillus sp. SG-1] gi|148850595|gb|EDL64753.1| S-adenosyl-methyltransferase MraW [Bacillus sp. SG-1] Length = 310 Score = 393 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 104/309 (33%), Positives = 175/309 (56%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSC 73 + +H VLL++ + L+ V +D T G G+S + + D+D A+ Sbjct: 1 MFEHTTVLLKETVDGLDIKEDGVYVDCTLGGAGHSEYLVSQLGVTGKLYCFDQDQTAIDH 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E + Y ++ + ++ F +++ + ++GV DGV+FDLGVSS Q+D +RGFS+ Sbjct: 61 AKEKLAPYLDRVTFIRSNFRFIKEELAERGVHQVDGVMFDLGVSSPQLDTPERGFSYHHD 120 Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM G ++A +VVNQ + L RI GEEK + +IA I R+ +TT Sbjct: 121 APLDMRMDLEGDLTAHEVVNQWPYEKLVRIFFRYGEEKFSKQIARKIEAAREIKSIETTG 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L LI++ + ++ HPA R FQA+RI VN+E++ + + L + + LK G + V+ Sbjct: 181 ELVDLIKEGIPAPARRKGGHPAKRVFQAIRIAVNDELDAVEEALEKSIEILKPSGRISVI 240 Query: 249 SFHSLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F + SG + + +A+ + +T+K ++P++E++ N R+R Sbjct: 241 TFHSLEDRITKTLFKEKASGPDLPHGLPVIPDAYKPELKLVTRKPILPSEEELERNNRAR 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRVAEK 309 >gi|291522688|emb|CBK80981.1| S-adenosyl-methyltransferase MraW [Coprococcus catus GD/7] Length = 313 Score = 393 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 96/312 (30%), Positives = 165/312 (52%), Gaps = 9/312 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSC 73 H VLL + I L+ + +D T G GG++ + + +I +D+D A+ Sbjct: 2 TFQHYSVLLNETIEQLDIKENGIYVDGTLGGGGHASAVLQRLGETGRLIGIDQDAAAIEA 61 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 E + + ++ ++ ++ +S + + D GVDG+V DLGVSS Q+D +RGF++++ Sbjct: 62 AGERLAPFGDKVTIVRSNYSAMPQVLADLGIHGVDGIVLDLGVSSYQLDTVERGFTYRED 121 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM +A D+VN +L ++ GE+K A IA IV R+ P +TT Sbjct: 122 TVLDMRMDQRQTKTARDIVNDYTETELFHMIRDYGEDKFARNIAKHIVMAREKKPIETTG 181 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ +I+ + + HP+ +++QA+RI +N+E++ L L L G + V+ Sbjct: 182 ELNDIIRAAIPAKVRAKGGHPSKKTYQAIRIELNHELDVLKNTLDQMIDLLNDHGRICVI 241 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+VK F + + + + IT+K ++P++E++ N RS+ Sbjct: 242 TFHSLEDRIVKNIFNTNERPCTCPPSFPVCVCGKKSKGRVITRKPILPSEEELEVNSRSK 301 Query: 308 SAKLRAGMRTVE 319 SAKLR R E Sbjct: 302 SAKLRVFERIRE 313 >gi|160935714|ref|ZP_02083089.1| hypothetical protein CLOBOL_00604 [Clostridium bolteae ATCC BAA-613] gi|158441458|gb|EDP19168.1| hypothetical protein CLOBOL_00604 [Clostridium bolteae ATCC BAA-613] Length = 315 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 98/312 (31%), Positives = 176/312 (56%), Gaps = 8/312 (2%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFA 70 + + H VLL + + LN PG + +D T G GG++ CK +I +D+D A Sbjct: 1 MEESTFVHKSVLLYETVGSLNIKPGGLYVDGTLGGGGHAYEVCKRLGSGKLIGIDQDADA 60 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSF 127 + + + ++++ ++ ++ ++ +++ + + +GVDG+ DLGVSS Q+D RGF++ Sbjct: 61 IEAAGKRLLPFQDKVTIVRSNYANIKEVLKELEIEGVDGIYLDLGVSSYQLDTASRGFTY 120 Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 ++ PLDMRM + ++A+ ++N + +L RI+ GE+ A IA IV+ R P + Sbjct: 121 REDAPLDMRMDQRNDVTAAHIINTYSEMELYRIIRDYGEDNFAKNIAKHIVRARGEHPIE 180 Query: 187 TTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT +L+ +I+ + + HPA R+FQA+RI N+E+E L Q + + L GG L Sbjct: 181 TTGELAEIIKGAIPARVRATGGHPAKRTFQAIRIECNHELEVLEQSIDTMIDLLNPGGRL 240 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 +++FHSLEDR+VK F + + + + +++K ++P++E++ N Sbjct: 241 SIITFHSLEDRIVKSRFRLNENPCICPHDFPVCVCGRKSKGKVVSRKPILPSEEELEENS 300 Query: 305 RSRSAKLRAGMR 316 RS+SAKLR R Sbjct: 301 RSKSAKLRVFER 312 >gi|225019362|ref|ZP_03708554.1| hypothetical protein CLOSTMETH_03315 [Clostridium methylpentosum DSM 5476] gi|224947993|gb|EEG29202.1| hypothetical protein CLOSTMETH_03315 [Clostridium methylpentosum DSM 5476] Length = 307 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 118/303 (38%), Positives = 177/303 (58%), Gaps = 7/303 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77 H VLLE+ + LN P + +D T G G+SR K + + DRDP A++ E Sbjct: 5 HTSVLLEECLEGLNIRPDGIYVDGTTGGAGHSREIAKRLTTGRLYSFDRDPDAIAVASER 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + Y L A FS + + +GV DGV+ DLGVSS Q+D +RGFS+ G LD Sbjct: 65 LAQYPCS-ELVHANFSTMDAELAKRGVNQVDGVLLDLGVSSFQLDTAERGFSYLNDGILD 123 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRMS SG+SA ++VN ++L RI+ GEEK IA IV++R+ P +TT+ LS + Sbjct: 124 MRMSKSGLSAREMVNTYPAEELARIIRDYGEEKYYYSIAKNIVRQREVQPIETTRQLSEI 183 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 + ++ +P+ R+FQA+RI VN E++ L+QGL +A L +GG L+V++FHSLE Sbjct: 184 VNSSMPAKARREKNPSKRTFQAIRIAVNEELDSLSQGLENAFSVLSSGGRLVVITFHSLE 243 Query: 255 DRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 DR+VK+F A + I + + + KK ++P+++++A NRRS+SAKLR Sbjct: 244 DRIVKQFNAKMCQGCICPPDFPICVCNNRPKARLVNKKPILPSEQELAHNRRSQSAKLRI 303 Query: 314 GMR 316 + Sbjct: 304 LEK 306 >gi|160880611|ref|YP_001559579.1| S-adenosyl-methyltransferase MraW [Clostridium phytofermentans ISDg] gi|263433295|sp|A9KM86|RSMH2_CLOPH RecName: Full=Ribosomal RNA small subunit methyltransferase H 2; AltName: Full=16S rRNA m(4)C1402 methyltransferase 2; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH 2 gi|160429277|gb|ABX42840.1| S-adenosyl-methyltransferase MraW [Clostridium phytofermentans ISDg] Length = 317 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 103/314 (32%), Positives = 178/314 (56%), Gaps = 9/314 (2%) Query: 12 AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDP 68 ++ H+ VLL++ I LN P + +D T G GG++ K I +D+D Sbjct: 2 SLEEKEFKHISVLLQETIDSLNIKPDGIYVDGTLGGGGHAYEVLKRLSPKGRYIGIDQDE 61 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGF 125 A++ + + ++ +Q ++ ++ + ++ + D G VDG++ DLGVSS Q+D +RGF Sbjct: 62 DAIAAAGKRLSEFSDQVTIVRSNYCNMKQVLKDLGIDKVDGILLDLGVSSYQLDTPERGF 121 Query: 126 SFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 S++++ PLDMRM + ++A D+VN+ + +++ RI+ GE+K A IA IV+ R P Sbjct: 122 SYRENAPLDMRMDNRNSLTARDIVNEYSEQEIYRIIRDYGEDKFAKNIAKHIVRMRSEKP 181 Query: 185 FQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 +TT +L+ I+ + + N HPA ++FQA+RI +N+E+E L L LK G Sbjct: 182 LETTDELTEAIKAAIPMKIRMNTGHPAKKTFQAIRIELNHELEVLTNTLEDMIDLLKEDG 241 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 L +++FHSLEDR+VK F + + ITKK ++P+++++ + Sbjct: 242 RLSIITFHSLEDRIVKAAFRKNENPCVCPPNFPVCVCNRKPKGIHITKKPILPSEQELEY 301 Query: 303 NRRSRSAKLRAGMR 316 N+RS+SAKLR + Sbjct: 302 NKRSKSAKLRVFEK 315 >gi|18310847|ref|NP_562781.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens str. 13] gi|20138978|sp|Q8XJ96|RSMH_CLOPE RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|18145529|dbj|BAB81571.1| conserved hypothetical protein [Clostridium perfringens str. 13] Length = 310 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 111/307 (36%), Positives = 169/307 (55%), Gaps = 10/307 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 HV VLL++ I LN + +D T G G+S K +I D+D A+ Sbjct: 4 KHVSVLLDECINALNIKEDGIYVDCTLGGAGHSSEIVKRLSSDGRLIRFDQDKDALKAAG 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E ++DYK + + F + D + D GVDG++ DLGVSS Q+D G+RGFS+ + P Sbjct: 64 ERLKDYK-NVTYVHSNFYAIYDVLTDLGIDGVDGILMDLGVSSYQLDNGERGFSYMQDAP 122 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ + SA ++VN + ++L RI+ GEEK A RIA IVK R+ +TT +L Sbjct: 123 LDMRMNRENEFSAYEIVNTYSEEELYRIIKEYGEEKFAKRIASFIVKNREEKNIETTLEL 182 Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+ + + HPA R+FQA+RI VN E+E +++ + K L GG + +++F Sbjct: 183 VEIIKAAIPAKARREGPHPAKRTFQAIRIEVNKELEIISKTILDGVKKLNKGGRMAIITF 242 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK F + + + I++K + ++E++ FN RSRSA Sbjct: 243 HSLEDRIVKNTFKELANPCTCPSEFPVCVCNRKPEVKLISRKPIEASKEELEFNPRSRSA 302 Query: 310 KLRAGMR 316 KLR + Sbjct: 303 KLRIIEK 309 >gi|239826514|ref|YP_002949138.1| S-adenosyl-methyltransferase MraW [Geobacillus sp. WCH70] gi|263455972|sp|C5D8L5|RSMH_GEOSW RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|239806807|gb|ACS23872.1| S-adenosyl-methyltransferase MraW [Geobacillus sp. WCH70] Length = 310 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 107/310 (34%), Positives = 174/310 (56%), Gaps = 11/310 (3%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H VLL++ + L+ P + +D T G GG+S + A D+D A+ Sbjct: 1 MFQHTTVLLKEAVDGLHIKPDGIYVDCTLGGGGHSEYLLSQLSEDGRLFAFDQDDMAIEY 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130 ++ + Y++Q + + F L + + +GV DG++FDLGVSS Q+D +RGFS+ Sbjct: 61 AKKRLARYEKQVTFIRRNFRFLAEELTARGVHRVDGILFDLGVSSPQLDTPERGFSYHHD 120 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM+ ++A D+VN ++L I GEEK + ++A I + R+ +TT Sbjct: 121 APLDMRMNREQSLTAYDIVNHWPYEELVHIFFHYGEEKFSKQVARKIEEVRKEKRIETTG 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L +I++ + ++ + HPA R FQA+RI VN+E++ + + A LK+GG + V+ Sbjct: 181 QLVDIIKEAIPAPARRSGGHPAKRIFQAIRIAVNDELQAFKEAITQAIDLLKSGGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 +FHSLEDR+ K F S ++ +IP PA + ITKK +VP++E++ N R+ Sbjct: 241 TFHSLEDRICKVAFKEASQGPQLPPGLPLIPDQYRPA-LKIITKKPIVPSEEEIEHNHRA 299 Query: 307 RSAKLRAGMR 316 RSAKLR + Sbjct: 300 RSAKLRIAEK 309 >gi|294501027|ref|YP_003564727.1| S-adenosyl-methyltransferase MraW [Bacillus megaterium QM B1551] gi|294350964|gb|ADE71293.1| S-adenosyl-methyltransferase MraW [Bacillus megaterium QM B1551] Length = 311 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 114/312 (36%), Positives = 177/312 (56%), Gaps = 11/312 (3%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSC 73 + +H VLL++ LN P V +D T G G+S +IA D+D A++ Sbjct: 1 MFNHTTVLLKEAAEGLNIKPDGVYVDCTLGGAGHSEYIVKQLSEKGKLIAFDQDDVALAN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E + Y ++ L ++ F L++ + G VDGV+FDLGVSS Q+D +RGFSF Sbjct: 61 AKEKLAPYLDRVILIKSNFRYLKEQLMKHGIEEVDGVLFDLGVSSPQLDTPERGFSFHHD 120 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM + + SA +VVN+ + L +I GEEK + +IA I R+S P +TT Sbjct: 121 APLDMRMDQNSMFSAYNVVNEWPYEKLVKIFFQYGEEKFSKQIARKIEAYRESKPIETTL 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L LI+ + ++ HPA R FQA+RI VN+E++ + A +K GG + V+ Sbjct: 181 ELVDLIKDGIPAPARRTGGHPAKRIFQAIRIAVNDELQVFEDAIEQAMDVIKKGGRVSVI 240 Query: 249 SFHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 +FHSLEDR+ K F + S ++ +IP P + + IT+K ++P++E++ N+R+ Sbjct: 241 TFHSLEDRICKVAFKNASTVPQLPHGLPIIPEEFKPKM-KVITRKPILPSEEEIEENKRA 299 Query: 307 RSAKLRAGMRTV 318 RSAKLR + V Sbjct: 300 RSAKLRIVEKLV 311 >gi|300811319|ref|ZP_07091816.1| S-adenosyl-methyltransferase MraW [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497683|gb|EFK32708.1| S-adenosyl-methyltransferase MraW [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 314 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 106/310 (34%), Positives = 168/310 (54%), Gaps = 12/310 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76 H VLL + I L P G +DATFG GG++R N+I D+D +A+ Q Sbjct: 4 KHTSVLLHETIDNLAPQSGGTYVDATFGGGGHARYLLSKLDKGNLIGFDQDQYAIDTAQS 63 Query: 77 TMRDY-----KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + + + L FS L++ + G+DG+ +DLGVSS Q+D +RGFS++ Sbjct: 64 NFAAFLKEDSQPRLQLVHNNFSHLKEELAKLRISGIDGIYYDLGVSSPQLDQAERGFSYR 123 Query: 129 KSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 LDMRM S A +VNQ + K L +L G+EK + +IA IV+RR++ P +T Sbjct: 124 FDARLDMRMDQSQDFDAYQLVNQYDQKQLADVLYRYGDEKFSRQIARKIVERRRAKPIET 183 Query: 188 TQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T +L +I++ + + + + HPA +SFQA+R+ VN+E++ L L A L GG + Sbjct: 184 TFELVEIIKEAIPAAARRSGGHPAKKSFQAIRVEVNHELDVLRASLEEAISLLNPGGRIS 243 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V++F SLED++VK+ F S + + + + +K + ++E++A N RS Sbjct: 244 VITFQSLEDKIVKQTFKKYSEVEIPRGMPVVPEGIKPTLRLVNRKPITASEEELAENNRS 303 Query: 307 RSAKLRAGMR 316 SAKLR + Sbjct: 304 HSAKLRVAEK 313 >gi|302671225|ref|YP_003831185.1| S-adenosyl-methyltransferase MraW [Butyrivibrio proteoclasticus B316] gi|302395698|gb|ADL34603.1| S-adenosyl-methyltransferase MraW [Butyrivibrio proteoclasticus B316] Length = 313 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 95/310 (30%), Positives = 162/310 (52%), Gaps = 9/310 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQ 75 H VLL + + LN P + LD T G G+S G ++ D+D A++ Sbjct: 4 KHYSVLLHECLDNLNIKPDGIYLDGTLGGAGHSFHIAERLDKGGHLYGTDQDEDAIAAAT 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + + ++ ++ + + + + GVDG++ DLGVSS Q+D +RGF++++ P Sbjct: 64 KRLEPFSDRVTIIRDNYENAVTRLKNLGVTGVDGILLDLGVSSYQLDNAERGFTYKEDVP 123 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM ++A D+VN + ++ I+ GE+K A IA I R AP +TT L Sbjct: 124 LDMRMDQRQTLTARDIVNDYSETEIFHIIRDYGEDKFAKNIAKHICIERAKAPIETTFQL 183 Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 + +I+ + + HP+ R++QA+RI +N E++ L L L GG L V++F Sbjct: 184 NDIIKAAIPAKMREKGGHPSKRTYQAIRIALNRELDVLQNSLDGFIDFLNPGGRLCVITF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+ K F + + + + +T+K ++P+ +++A N+RS+SA Sbjct: 244 HSLEDRITKNNFRTNENPCTCPPNFPVCVCGKKSKGRVVTRKPILPSDQELAENKRSQSA 303 Query: 310 KLRAGMRTVE 319 KLR + E Sbjct: 304 KLRVFEKVSE 313 >gi|308181002|ref|YP_003925130.1| cell division protein MraW [Lactobacillus plantarum subsp. plantarum ST-III] gi|308046493|gb|ADN99036.1| cell division protein MraW [Lactobacillus plantarum subsp. plantarum ST-III] Length = 319 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 117/313 (37%), Positives = 168/313 (53%), Gaps = 13/313 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72 +H VLL + IA LN P + +D T G GG+SR + ++ + D+D A+ Sbjct: 2 ATFEHTTVLLHEAIAALNVRPDGIYVDCTLGGGGHSREILQQLGPEGHLYSFDQDQTAID 61 Query: 73 CGQETMRDYKEQ--FSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSF 127 Q + Y E+ + ++ F+ L+ + +G VDGVV+DLGVSS Q D RGFS+ Sbjct: 62 YNQSNLATYLERGQVTFIKSNFANLKTELNARGLDHVDGVVYDLGVSSPQFDDAARGFSY 121 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 Q PLDMRM S ++A VVN DL RI GEEK + ++A I + R P Sbjct: 122 QHDAPLDMRMDQSQKLTAQTVVNTWPYADLVRIFYRYGEEKFSKQVARLIERERAVQPIV 181 Query: 187 TTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT L +I+ + + HPA R FQA+RI VNNE+ L L A + G + Sbjct: 182 TTGQLVEIIKNAIPARARRTGGHPAKRVFQAIRIAVNNELGVLETSLEQAIDLINVHGRV 241 Query: 246 IVVSFHSLEDRLVKKFFASRS--GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 V++F SLEDRLVK F S ++ +IP+ P ++ +++K VVP+ ++ N Sbjct: 242 SVITFQSLEDRLVKTIFKEHSDLPELPPGLPVIPAEMQP-DYRLVSRKPVVPSDAEIEAN 300 Query: 304 RRSRSAKLRAGMR 316 RR+RSAKLRA R Sbjct: 301 RRARSAKLRAIER 313 >gi|28378805|ref|NP_785697.1| cell division protein MraW [Lactobacillus plantarum WCFS1] gi|38258035|sp|Q88V76|RSMH_LACPL RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|28271642|emb|CAD64548.1| cell division protein MraW [Lactobacillus plantarum WCFS1] Length = 319 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 117/313 (37%), Positives = 168/313 (53%), Gaps = 13/313 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72 +H VLL + IA LN P + +D T G GG+SR + ++ + D+D A+ Sbjct: 2 ATFEHTTVLLHEAIAALNVRPDGIYVDCTLGGGGHSREILQQLGLEGHLYSFDQDQTAID 61 Query: 73 CGQETMRDYKEQ--FSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSF 127 Q + Y E+ + ++ F+ L+ + +G VDGVV+DLGVSS Q D RGFS+ Sbjct: 62 YNQSNLATYLERGQVTFIKSNFANLKTELNARGLDHVDGVVYDLGVSSPQFDDAARGFSY 121 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 Q PLDMRM S ++A VVN DL RI GEEK + ++A I + R P Sbjct: 122 QHDAPLDMRMDQSQKLTAQTVVNTWPYADLVRIFYRYGEEKFSKQVARLIERERAVQPIV 181 Query: 187 TTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT L +I+ + + HPA R FQA+RI VNNE+ L L A + G + Sbjct: 182 TTGQLVEIIKNAIPARARRTGGHPAKRVFQAIRIAVNNELGVLETSLEQAIDLINVHGRV 241 Query: 246 IVVSFHSLEDRLVKKFFASRS--GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 V++F SLEDRLVK F S ++ +IP+ P ++ +++K VVP+ ++ N Sbjct: 242 SVITFQSLEDRLVKTIFKEHSDLPELPPGLPVIPAEMQP-DYRLVSRKPVVPSDAEIEAN 300 Query: 304 RRSRSAKLRAGMR 316 RR+RSAKLRA R Sbjct: 301 RRARSAKLRAIER 313 >gi|153809802|ref|ZP_01962470.1| hypothetical protein RUMOBE_00183 [Ruminococcus obeum ATCC 29174] gi|149833980|gb|EDM89060.1| hypothetical protein RUMOBE_00183 [Ruminococcus obeum ATCC 29174] Length = 313 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 103/307 (33%), Positives = 167/307 (54%), Gaps = 9/307 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H VLLE+ I L P +D T G G+++ C+ I +D+D A+ Sbjct: 4 KHKSVLLEETIDGLRVKPDGTYVDGTLGGAGHAQEVCRRLSAKGRFIGIDQDQDAIVAAS 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + Y ++ + ++ + + + + + G VDG+V DLGVSS Q+D +RGF+++ P Sbjct: 64 ERLSAYGDRVQIIRSNYCYMANELKNLGIQKVDGIVLDLGVSSYQLDNEERGFTYRVDAP 123 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM +A+D+VN + ++L RI+ GE+K A IA IV R AP QTT +L Sbjct: 124 LDMRMDQRQSRTAADIVNGYDERELYRIIRDYGEDKFAKNIAKHIVAARAKAPIQTTGEL 183 Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 + +I++++ + HPA R+FQA+RI +N E++ L + L L GG + +++F Sbjct: 184 TEIIRQSIPMKIQATGGHPAKRTFQAIRIELNRELDVLRESLDGMIDLLDDGGRICIITF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK F + + + IT+K ++P++ ++ N RS+SA Sbjct: 244 HSLEDRIVKTIFRKNENPCTCPPDFPVCVCGKKSKGKVITRKPILPSETEMEENPRSKSA 303 Query: 310 KLRAGMR 316 KLR R Sbjct: 304 KLRIFER 310 >gi|39998167|ref|NP_954118.1| S-adenosyl-methyltransferase MraW [Geobacter sulfurreducens PCA] gi|42559425|sp|P60396|RSMH_GEOSL RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|39985113|gb|AAR36468.1| S-adenosyl-methyltransferase MraW [Geobacter sulfurreducens PCA] gi|298507105|gb|ADI85828.1| SAM-dependent membrane protein methyltransferase MraW [Geobacter sulfurreducens KN400] Length = 311 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 122/306 (39%), Positives = 173/306 (56%), Gaps = 9/306 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H PV+ +V+ L+P PG V +D T G G++R + S +I DRDP A+ +E Sbjct: 5 HRPVMPAEVLEYLSPRPGGVYVDGTLGGAGHARLILEATSPDGMLIGFDRDPAALEVARE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + E+F FS++ + + GVDGV + D+GVSS Q+D +RGFSF PL Sbjct: 65 RLALFGERFRPVPGNFSEMGRVLAELGVDGVDGFLLDVGVSSHQLDTAERGFSFLTDAPL 124 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +A+D+VN N +L RI+ GEE+ A RIA IVK R P + T L Sbjct: 125 DMRMNTLVPGTAADLVNDLNEHELARIIKEYGEERWARRIASFIVKARVDGPIERTLQLV 184 Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + + RIHPATR+FQALRI VN+E+ L +GL SA L+ GG +V+SFH Sbjct: 185 DIIKGAIPRGAWEERIHPATRTFQALRIAVNDELGSLERGLESALGLLRPGGRGVVISFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK F + + + + +T + VV +VA N R+RSAK Sbjct: 245 SLEDRIVKTMFRRYAQGCTCPKELPRCVCGGVPRLRILTGRPVVAGDVEVAENPRARSAK 304 Query: 311 LRAGMR 316 LRA + Sbjct: 305 LRAAEK 310 >gi|241888447|ref|ZP_04775758.1| S-adenosyl-methyltransferase MraW [Gemella haemolysans ATCC 10379] gi|241864889|gb|EER69260.1| S-adenosyl-methyltransferase MraW [Gemella haemolysans ATCC 10379] Length = 311 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 108/307 (35%), Positives = 166/307 (54%), Gaps = 8/307 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74 + H VLL + + L+ + +D T G G+S K + A D+D A+ Sbjct: 1 MFKHYSVLLNEAVEGLDIKEDGIYVDCTLGGAGHSLEILKRLKNGKLYAFDQDNVALENA 60 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +E + +Y ++ ++ F L++ + + GV DGV++DLGVSS Q+D +RGFS+ Sbjct: 61 KEKLAEYSDKVVFIKSNFVNLKEKLAEHGVNEVDGVLYDLGVSSPQLDTPERGFSYNYDT 120 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM ISA +VVN+ + DL +I GEE + +IA I K+R+ P +TT + Sbjct: 121 RLDMRMDTDAKISAYEVVNEYSYHDLVKIFYRYGEENFSKQIARNIEKKREQKPIETTFE 180 Query: 191 LSSLIQKTVYFSKNN-RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I++++ +K HPA R FQA+RI VNNE+ L A + GG + V++ Sbjct: 181 LVEIIKESIPAAKRRTGGHPAKRVFQAIRIAVNNELSVFEDSLEQAIDIVSVGGRISVIT 240 Query: 250 FHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+ K+ F S S K + I + + IT+K + P+ ++ N RSRS Sbjct: 241 FHSLEDRICKQIFNSYSKSKDIPKNLPIMPEESLSKLKVITRKPIYPSDIELEENNRSRS 300 Query: 309 AKLRAGM 315 AKLR Sbjct: 301 AKLRVAQ 307 >gi|253699149|ref|YP_003020338.1| S-adenosyl-methyltransferase MraW [Geobacter sp. M21] gi|263455964|sp|C6DZJ8|RSMH_GEOSM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|251773999|gb|ACT16580.1| S-adenosyl-methyltransferase MraW [Geobacter sp. M21] Length = 312 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 116/308 (37%), Positives = 171/308 (55%), Gaps = 9/308 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 H+ VL ++V+ L+P G V +D T G G++ +I DRD A++ + Sbjct: 5 HHISVLPDEVLQALSPKSGGVYVDGTLGGAGHAGLILTASAPEGRLIGFDRDEEAIAVAR 64 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVV---FDLGVSSMQIDCGDRGFSFQKSGP 132 + + + + + F+ + + + GVDG+ DLGVSS Q+D +RGFSF P Sbjct: 65 QRLSVFGGRVRIIHRNFAGIAQALAEIGVDGIDGFVLDLGVSSHQLDRDERGFSFMHDAP 124 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM SG SA+D+VN +L RI+ GEE+ A R+A IVK R P +TT +L Sbjct: 125 LDMRMDRSSGQSAADLVNTLPEAELYRIISEYGEERWAKRVASFIVKARDERPIETTLEL 184 Query: 192 SSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+ + +K R+HPATR+FQALRI VN E++ L +GL+ LK GG V+SF Sbjct: 185 VDVIKGAIPKAKWEERLHPATRTFQALRIAVNEELKSLEEGLQGLLSLLKQGGRGAVISF 244 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK+ F + + + I F+ +T+K + + +VA N RSRSA Sbjct: 245 HSLEDRIVKEGFRAAATGCTCPKELPICVCGRVPRFKLVTRKPITAGESEVAANPRSRSA 304 Query: 310 KLRAGMRT 317 KLR + Sbjct: 305 KLRVVEKI 312 >gi|254557010|ref|YP_003063427.1| cell division protein MraW [Lactobacillus plantarum JDM1] gi|254045937|gb|ACT62730.1| cell division protein MraW [Lactobacillus plantarum JDM1] Length = 319 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 117/313 (37%), Positives = 168/313 (53%), Gaps = 13/313 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72 +H VLL + IA LN P + +D T G GG+SR + ++ + D+D A+ Sbjct: 2 ATFEHTTVLLHEAIAALNVRPDGIYVDCTLGGGGHSREILQQLGPEGHLYSFDQDQTAID 61 Query: 73 CGQETMRDYKEQ--FSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSF 127 Q + Y E+ + ++ F+ L+ + +G VDGVV+DLGVSS Q D RGFS+ Sbjct: 62 YNQSNLATYLERGQVTFIKSNFANLKTELNARGLDHVDGVVYDLGVSSPQFDDAARGFSY 121 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 Q PLDMRM S ++A VVN DL RI GEEK + ++A I + R P Sbjct: 122 QHDAPLDMRMDQSQKLTAQTVVNTWPYADLVRIFYRYGEEKFSKQVARLIERERVVQPIV 181 Query: 187 TTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT L +I+ + + HPA R FQA+RI VNNE+ L L A + G + Sbjct: 182 TTGQLVEIIKNAIPARARRTGGHPAKRVFQAIRIAVNNELGVLETSLEQAIDLINVHGRV 241 Query: 246 IVVSFHSLEDRLVKKFFASRS--GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 V++F SLEDRLVK F S ++ +IP+ P ++ +++K VVP+ ++ N Sbjct: 242 SVITFQSLEDRLVKTIFKEHSDLPELPPGLPVIPAEMQP-DYRLVSRKPVVPSDAEIEAN 300 Query: 304 RRSRSAKLRAGMR 316 RR+RSAKLRA R Sbjct: 301 RRARSAKLRAIER 313 >gi|51892339|ref|YP_075030.1| S-adenosyl-methyltransferase MraW [Symbiobacterium thermophilum IAM 14863] gi|116241373|sp|Q67Q57|RSMH_SYMTH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|51856028|dbj|BAD40186.1| putative S-adenosylmethionine-dependent methyltransferase [Symbiobacterium thermophilum IAM 14863] Length = 318 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 108/307 (35%), Positives = 173/307 (56%), Gaps = 9/307 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 H+PVLL++ + L PG +D T G GG++ + +I LD+D A+ Sbjct: 4 HHIPVLLQETMEALAVRPGGTYIDCTVGGGGHAAEILRRSSPDGRLIGLDQDENALRAAG 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + + ++ +L + F + D G+ DGV+ D+GVSS Q D G+RGFS+ P Sbjct: 64 DRLAPFGDRVTLVRTNFEHVADVADRLGLGAADGVLMDIGVSSHQFDEGERGFSYHHDAP 123 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + ++A+ +VN+ +++ R++ GEE+ ASRIA IV+ R+ P +TT L Sbjct: 124 LDMRMDRTRPLTAAVLVNEWEEEEIARVIREYGEERWASRIAQFIVRARRQRPIETTGQL 183 Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+ + ++ HPA R+FQA+RI VN+E+ L +GL A + L+ GG L V++F Sbjct: 184 VEIIKAAIPASARREGGHPARRTFQAIRIAVNDELGALERGLEGALRVLRPGGRLAVITF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK+ FA + + + + +T+K V + +V N RSRSA Sbjct: 244 HSLEDRIVKQTFARWAKPCTCPPDLPVCVCGKAPLAEPVTRKPVRASGAEVKANPRSRSA 303 Query: 310 KLRAGMR 316 LRA ++ Sbjct: 304 TLRAVVK 310 >gi|329766778|ref|ZP_08258308.1| ribosomal RNA small subunit methyltransferase H [Gemella haemolysans M341] gi|328839289|gb|EGF88871.1| ribosomal RNA small subunit methyltransferase H [Gemella haemolysans M341] Length = 311 Score = 391 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 108/307 (35%), Positives = 166/307 (54%), Gaps = 8/307 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74 + H VLL + + LN + +D T G G+S K + A D+D A+ Sbjct: 1 MFKHYSVLLNEAVEGLNIIEDGIYVDCTLGGAGHSLEILKQLKNGKLYAFDQDNIALENA 60 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + +Y ++ ++ F L++ + + GV DGV++DLGVSS Q+D +RGFS+ Sbjct: 61 KNKLAEYSDKVVFIKSNFVNLKEKLAEHGVHEVDGVLYDLGVSSPQLDTPERGFSYNYDT 120 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM ISA +VVN+ + DL +I GEE + +IA I K+R+ P +TT + Sbjct: 121 KLDMRMDTDAKISAYEVVNEYSYHDLVKIFYRYGEENFSKQIARNIEKKREQKPIETTFE 180 Query: 191 LSSLIQKTVYFSKNN-RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I++++ +K HPA R FQA+RI VNNE+ L A +K GG + V++ Sbjct: 181 LVEIIKESIPAAKRRTGGHPAKRVFQAIRIAVNNELSVFEDSLEQAIDIVKVGGRISVIT 240 Query: 250 FHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+ K+ F S + K + I + + IT+K + P+ ++ N RSRS Sbjct: 241 FHSLEDRICKQIFNSYAKAKDIPKNLPIMPEESLSKLKVITRKPIYPSDIELEENNRSRS 300 Query: 309 AKLRAGM 315 AKLR Sbjct: 301 AKLRVAE 307 >gi|217963812|ref|YP_002349490.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes HCC23] gi|290892188|ref|ZP_06555184.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL J2-071] gi|263456353|sp|B8DH88|RSMH_LISMH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|217333082|gb|ACK38876.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes HCC23] gi|290558311|gb|EFD91829.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL J2-071] gi|307571615|emb|CAR84794.1| S-adenosyl-methyltransferase [Listeria monocytogenes L99] Length = 312 Score = 391 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 105/311 (33%), Positives = 176/311 (56%), Gaps = 9/311 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H VLL + + +L P + +DAT G G+S ++ A D+D A+ Sbjct: 1 MFKHETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + DY ++ + +A F +++ + ++G VDG+++DLGVSS Q+D +RGFS+ + Sbjct: 61 AKIKLADYSDKVTFIKANFRDMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQD 120 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM ++A VVN+ + +DL RI GEEK + +IA I +RR+ P +TT Sbjct: 121 AALDMRMDQEQELTAKTVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTG 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I+ + ++ HP R+FQA+RI VN+E+ + L A LK GG + V+ Sbjct: 181 ELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLLKPGGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K+ F + G + + + + F+ T+K +VP++E++ N R+R Sbjct: 241 TFHSLEDRITKQLFQEATKGPDLPPGLPVIPDEYKPDFKLATRKPIVPSEEELEQNNRAR 300 Query: 308 SAKLRAGMRTV 318 SAKLR + + Sbjct: 301 SAKLRVIEKII 311 >gi|15615138|ref|NP_243441.1| hypothetical protein BH2575 [Bacillus halodurans C-125] gi|20139210|sp|Q9K9S0|RSMH_BACHD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|10175196|dbj|BAB06294.1| BH2575 [Bacillus halodurans C-125] Length = 310 Score = 391 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 115/309 (37%), Positives = 183/309 (59%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73 + +HV VL + + LN P + +D T G G+S+ K G ++ A D+D +A+S Sbjct: 1 MFEHVTVLKNESVIGLNIKPDGIYVDCTLGGAGHSQEIVKQLTGGGHLYAFDQDQYALSH 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130 +ET+ Y+ F+L ++ F +++ + + GV DGV+FDLGVSS Q+D +RGFS+ + Sbjct: 61 AKETLSPYRGSFTLIESNFRYMREKLEELGVHHVDGVLFDLGVSSPQLDEDERGFSYHRD 120 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM+ S +SA +VVNQ + +L +I+ GEE+ A +IA I + R+ P +TT Sbjct: 121 APLDMRMNRSQSLSAYEVVNQWDFIELMKIISRYGEERFAKQIARKIEQSREKKPIRTTG 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I++ + ++ HPA R+FQA+RI VN+E+ + L +A G + V+ Sbjct: 181 ELVDIIKEAIPAPARRTGGHPAKRTFQAIRIAVNDELGAFEEALEAAIDLTAPKGRICVI 240 Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K+ F S G + + + A + ITKK +VPT E++ N R+R Sbjct: 241 TFHSLEDRICKEMFREASKGPDVPPGLPVIPEEYKATLKLITKKPIVPTAEEIELNNRAR 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRIAEK 309 >gi|16801213|ref|NP_471481.1| S-adenosyl-methyltransferase MraW [Listeria innocua Clip11262] gi|20139025|sp|Q929X6|RSMH_LISIN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|16414661|emb|CAC97377.1| lin2147 [Listeria innocua Clip11262] Length = 312 Score = 391 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 103/311 (33%), Positives = 176/311 (56%), Gaps = 9/311 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H VLL + + +L P + +DAT G G+S ++ A D+D A+ Sbjct: 1 MFKHETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEQGHLFAFDQDQTAIDN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + +Y ++ + ++ F +++ + ++G VDG+++DLGVSS Q+D +RGFS+ + Sbjct: 61 AKIKLAEYSDRVTFIKSNFRYMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQD 120 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM ++A VVN+ + +DL RI GEEK + +IA I +RR+ P +TT Sbjct: 121 AALDMRMDQEQELTAKKVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTG 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I+ + ++ HP R+FQA+RI VN+E+ + L +A LK GG + V+ Sbjct: 181 ELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLENALTLLKPGGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F + G + + + + F+ T+K +VP++E++ N R+R Sbjct: 241 TFHSLEDRITKYLFQEATKGPDLPPGLPVIPDEYKPDFKLATRKPIVPSEEELEQNNRAR 300 Query: 308 SAKLRAGMRTV 318 SAKLR + + Sbjct: 301 SAKLRVIEKII 311 >gi|116492952|ref|YP_804687.1| S-adenosyl-methyltransferase MraW [Pediococcus pentosaceus ATCC 25745] gi|122265584|sp|Q03EX7|RSMH_PEDPA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|116103102|gb|ABJ68245.1| SAM-dependent methyltransferase for cell envelope biogenesis [Pediococcus pentosaceus ATCC 25745] Length = 314 Score = 391 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 111/313 (35%), Positives = 179/313 (57%), Gaps = 13/313 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72 T H VLLE+ + L+ + +D T G GG+SR ++ + D+D A+ Sbjct: 2 TEFKHTTVLLEETVNGLDVKEDGIYVDCTLGGGGHSRLILSKLGENGHLYSFDQDQTAID 61 Query: 73 CGQETMRDY--KEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 Q+ + +Y K Q + ++ F L++ ++ GVDGV++DLGVSS Q D RGFS+ Sbjct: 62 YNQKNLAEYVAKGQVTFVKSNFRNLKNELNHLGIDGVDGVLYDLGVSSPQFDDAGRGFSY 121 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + PLDMRM + ++A +VVN+ + DL RI GEEK + ++A I R+ P + Sbjct: 122 RFDAPLDMRMDQTQKLNAREVVNEWSYNDLVRIFFRYGEEKYSKQVARKIESTREEKPIE 181 Query: 187 TTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT +L+ LI+ + + + HPA + FQA+RI VN+E+ L + L A + L G + Sbjct: 182 TTGELADLIKSAIPAAARRTGGHPAKKIFQAIRIAVNDELGALEESLEQALQILNPAGRI 241 Query: 246 IVVSFHSLEDRLVKKFFASRS--GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 V++F SLEDRLVK+ F ++ G + A +IP + P ++ I +K ++P+++++ N Sbjct: 242 SVITFQSLEDRLVKRMFKEQTEIGDLPAGLPIIPDDMKPK-YKLINRKPIIPSEDELEEN 300 Query: 304 RRSRSAKLRAGMR 316 RRS SAKLR + Sbjct: 301 RRSHSAKLRIIEK 313 >gi|325684346|gb|EGD26515.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 314 Score = 391 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 105/310 (33%), Positives = 166/310 (53%), Gaps = 12/310 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76 H VLL + I L P G +DATFG GG++R N+I D+D +A+ Q Sbjct: 4 KHTSVLLHETIDNLAPQSGGTYVDATFGGGGHARYLLSKLDKGNLIGFDQDQYAIDTAQS 63 Query: 77 TMRDY-----KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + + + L FS L++ + G+DG+ +DLGVSS Q+D +RGFS++ Sbjct: 64 NFAAFLKEDSQPRLQLVHNNFSHLKEELAKLGISGIDGIYYDLGVSSPQLDQAERGFSYR 123 Query: 129 KSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 LDMRM S A +VNQ + K L +L G+EK + +IA IV+RR+ P +T Sbjct: 124 FDARLDMRMDQSQDFDAYQLVNQYDQKQLADVLYRYGDEKFSRQIARKIVERRRVKPIET 183 Query: 188 TQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T +L +I++ + + + + HPA +SFQA+R+ VN+E++ L L A L GG + Sbjct: 184 TFELVEIIKEAIPAAARRSGGHPAKKSFQAIRVEVNHELDVLRASLEEAISLLNPGGRIS 243 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V++F S ED++VK+ F S + + + + +K + ++E++A N RS Sbjct: 244 VITFQSSEDKIVKQTFKKYSEVEIPRGMPVVPEGIKPTLRLVNRKPITASEEELAENNRS 303 Query: 307 RSAKLRAGMR 316 SAKLR + Sbjct: 304 HSAKLRVAEK 313 >gi|239623438|ref|ZP_04666469.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239521469|gb|EEQ61335.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 315 Score = 391 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 100/312 (32%), Positives = 172/312 (55%), Gaps = 8/312 (2%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFA 70 + H VLL + + LN PG + +D T G GG++ CK +I +D+D A Sbjct: 1 MEEQAFVHKSVLLYETVGSLNIKPGGIYVDGTLGGGGHAYEVCKRLGSGRLIGIDQDADA 60 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSF 127 + + +K++ ++ ++ + ++ + + G VDG+ DLGVSS Q+D RGF++ Sbjct: 61 IEAAGRRLEHFKDKVTIVRSNYENIRTVLNELGLLKVDGIYLDLGVSSYQLDTASRGFTY 120 Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 ++ PLDMRM + +A+D+VN +L RI+ GE+ A IA IV+ R P + Sbjct: 121 REDAPLDMRMDQRNTTTAADIVNTYTEMELYRIIRDYGEDNFAKNIAKHIVRARGEHPIE 180 Query: 187 TTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT +L+ +I+ + + HPA R+FQA+RI N+E++ L Q + + + L GG L Sbjct: 181 TTGELAEIIKAAIPARVRATGGHPAKRTFQAIRIECNHELDVLEQSIDTMIELLNPGGRL 240 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 +++FHSLEDR+VK F + + + + + +++K ++P++E++ N Sbjct: 241 SIITFHSLEDRIVKNRFRTNENPCICPHEFPVCVCGRKSKGKVVSRKPILPSKEELEENS 300 Query: 305 RSRSAKLRAGMR 316 RS+SAKLR R Sbjct: 301 RSKSAKLRVFER 312 >gi|300854240|ref|YP_003779224.1| putative S-adenosyl-methyltransferase [Clostridium ljungdahlii DSM 13528] gi|300434355|gb|ADK14122.1| predicted S-adenosyl-methyltransferase [Clostridium ljungdahlii DSM 13528] Length = 309 Score = 391 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 106/307 (34%), Positives = 165/307 (53%), Gaps = 9/307 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 HVPVLL + I LN + +D T G GG+S K +I +D D A++ + Sbjct: 4 KHVPVLLNETINSLNIKEDGIYVDCTLGGGGHSFEILKRLSDKGRLIGIDEDTSAINATR 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + ++K + F + + + + VDG++ DLGVSS Q+D +RGFS+ K P Sbjct: 64 ERLNEFK-NITYVHNNFYYIDEILEELKIDKVDGILMDLGVSSYQLDESERGFSYMKDAP 122 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ S +SA +V+N + ++L ++ GEE + RIA IV R+ AP QTT L Sbjct: 123 LDMRMNRDSSLSAYEVINNYSEENLYNVIRDYGEENFSKRIAKFIVAEREKAPIQTTLQL 182 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + HPA R+FQA+RI VN E++ L + + + K L GG + +++FH Sbjct: 183 VDIIRNAIPARFQKEGHPAKRTFQAIRIEVNGELKILNKAVEDSVKRLNTGGRISIITFH 242 Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR++K F + + + I KK ++PT+E+ N RS+S+K Sbjct: 243 SLEDRIIKTKFKKLENPCTCPPDFPLCVCGKKPIVKIINKKPIIPTKEEKEKNSRSKSSK 302 Query: 311 LRAGMRT 317 LR + Sbjct: 303 LRTAEKI 309 >gi|325662359|ref|ZP_08150968.1| ribosomal RNA small subunit methyltransferase H 2 [Lachnospiraceae bacterium 4_1_37FAA] gi|331086162|ref|ZP_08335244.1| ribosomal RNA small subunit methyltransferase H 2 [Lachnospiraceae bacterium 9_1_43BFAA] gi|325471361|gb|EGC74584.1| ribosomal RNA small subunit methyltransferase H 2 [Lachnospiraceae bacterium 4_1_37FAA] gi|330406321|gb|EGG85835.1| ribosomal RNA small subunit methyltransferase H 2 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 316 Score = 391 bits (1005), Expect = e-107, Method: Composition-based stats. Identities = 106/307 (34%), Positives = 168/307 (54%), Gaps = 9/307 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H VLLE+ + LN P + +D T G GG++ CK + I +D+D A+ Sbjct: 4 KHKSVLLEETVNGLNIKPDGIYVDGTLGGGGHAEEVCKQLNDKGSFIGIDQDAAAIEAAS 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + E+ ++ ++ + ++ + ++G VDG++ DLGVSS Q+D +RGFS++ P Sbjct: 64 VRLAGFGERVTIIRSNYCDMKSRLRERGIDKVDGIILDLGVSSYQLDTAERGFSYRVDAP 123 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM +A D+VN + +L RI+ GE+K A IA IV R+ AP +TT L Sbjct: 124 LDMRMDRRQEKTARDIVNTYSEMELFRIIRDYGEDKFAKNIAKHIVMEREKAPIETTGQL 183 Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+ + + N HPA R+FQA+RI +N E+E L L + L G + +++F Sbjct: 184 CEIIRHAIPMKFQKNTGHPAKRTFQAIRIELNRELEVLRDTLDEMIELLNDNGRICIITF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK F H + + + + ITKK ++P ++++ N RS+SA Sbjct: 244 HSLEDRIVKGIFKKNENPCTCPSHFPVCVCGNVSKGKVITKKPILPGEQELEENSRSKSA 303 Query: 310 KLRAGMR 316 KLR R Sbjct: 304 KLRIFER 310 >gi|315924810|ref|ZP_07921027.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Pseudoramibacter alactolyticus ATCC 23263] gi|315621709|gb|EFV01673.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Pseudoramibacter alactolyticus ATCC 23263] Length = 314 Score = 391 bits (1005), Expect = e-107, Method: Composition-based stats. Identities = 117/308 (37%), Positives = 174/308 (56%), Gaps = 8/308 (2%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCG 74 G H+ VL ++ IA L G + +D T G GG+S + C+ + +I +D+D +A+S Sbjct: 7 GKHITVLRDEAIAGLGIVRGGIYVDCTLGGGGHSEAICRALGHQGTLIGIDQDQYALSRA 66 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +R + + F L+ + + G+ DG +FDLGVSS Q D +RGFS+ G Sbjct: 67 ETRLRSQRCHKIFVRNNFVDLETVLDNAGIEKADGFLFDLGVSSFQFDQAERGFSYHHDG 126 Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S ++A VVN + +DL RIL GEEK + R+A AIVK R AP T Sbjct: 127 PLDMRMDRSRPLTAERVVNTYSQEDLKRILWGYGEEKMSGRVAAAIVKARAQAPITRTGQ 186 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ +I+ + HPA ++FQALRI VN E+ L L++A L GG + V++F Sbjct: 187 LAEIIKAAYPEKLKRKGHPAKKTFQALRIEVNGELRILNDALKAAIDRLNPGGRICVITF 246 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLED+LVK+ F ++ + + + IT+K +VP++ ++A NRR+RSA Sbjct: 247 HSLEDQLVKRLFTEQADPCICPPELPQCVCGRVPTIKKITRKPIVPSETELAANRRARSA 306 Query: 310 KLRAGMRT 317 KLR R Sbjct: 307 KLRIAERI 314 >gi|184155045|ref|YP_001843385.1| cell division protein [Lactobacillus fermentum IFO 3956] gi|227514829|ref|ZP_03944878.1| S-adenosyl-methyltransferase [Lactobacillus fermentum ATCC 14931] gi|260663589|ref|ZP_05864478.1| methylase MraW [Lactobacillus fermentum 28-3-CHN] gi|263458139|sp|B2GB73|RSMH_LACF3 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|183226389|dbj|BAG26905.1| cell division protein [Lactobacillus fermentum IFO 3956] gi|227086819|gb|EEI22131.1| S-adenosyl-methyltransferase [Lactobacillus fermentum ATCC 14931] gi|260551815|gb|EEX24930.1| methylase MraW [Lactobacillus fermentum 28-3-CHN] Length = 314 Score = 391 bits (1005), Expect = e-107, Method: Composition-based stats. Identities = 124/309 (40%), Positives = 182/309 (58%), Gaps = 12/309 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76 +HV VLL + +A L P V +DAT G GG+S K ++ + D+D A+ Q Sbjct: 5 NHVTVLLHEAVAGLAIQPAGVYVDATLGGGGHSGEILKQLTSGHLYSFDQDETAIHYNQA 64 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + + +L Q F L+ + D+GV DG+V+DLGVSS Q D RGFS+Q Sbjct: 65 NLGPAIEEGKLTLMQTNFRNLKQALADQGVTAIDGIVYDLGVSSPQFDDAKRGFSYQHDA 124 Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ +SA VVN+ + ++L RIL GEEK A +IA AI + RQ P QTT + Sbjct: 125 PLDMRMNQDQPLSAYQVVNEWSYQELVRILYRYGEEKFAKQIARAIERARQKQPIQTTME 184 Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L++++++ + + + + HPA +SFQA+RI VN+E+ L L A LK GG + V++ Sbjct: 185 LANIVKEAIPAAARRHGGHPAKKSFQAIRIAVNDELGALEDSLEQALALLKVGGRISVIT 244 Query: 250 FHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 F SLEDRLVK F + + +IP++A P F+ I KK V+PT++++ N R+ Sbjct: 245 FQSLEDRLVKTMFKEATSLPDLPPGLPVIPADAQP-DFKLINKKPVLPTEDELKVNHRAH 303 Query: 308 SAKLRAGMR 316 SAKLR R Sbjct: 304 SAKLRVIER 312 >gi|302380517|ref|ZP_07268982.1| S-adenosyl-methyltransferase MraW [Finegoldia magna ACS-171-V-Col3] gi|303234081|ref|ZP_07320730.1| S-adenosyl-methyltransferase MraW [Finegoldia magna BVS033A4] gi|302311460|gb|EFK93476.1| S-adenosyl-methyltransferase MraW [Finegoldia magna ACS-171-V-Col3] gi|302495006|gb|EFL54763.1| S-adenosyl-methyltransferase MraW [Finegoldia magna BVS033A4] Length = 312 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 101/309 (32%), Positives = 165/309 (53%), Gaps = 9/309 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76 HVP+LL + I LN GK+ +D T G G+SR K +I D+D A+ ++ Sbjct: 4 KHVPILLNECIENLNIRDGKIYVDCTVGGAGHSREIAKRIGNGKLICFDQDEDALKVAKQ 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + ++ ++ + F +++ + + G VDG++ D+GVSS QID RGFS+ L Sbjct: 64 RLEEFGDKIIFIKDNFKNIKNDLHNLGIEKVDGILMDIGVSSYQIDEDSRGFSYMHDADL 123 Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S SA D+VN + +DL ++ +EK A RIA I R++ P TT +L Sbjct: 124 DMRMDQSNPISAKDIVNTYSKEDLENVIFKYSDEKWAKRIAEFICNARETKPINTTFELV 183 Query: 193 SLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+K + + H A ++FQA+RI VN E++ L Q + + L G + +++F Sbjct: 184 EVIEKAIPKKVRVNQKGHSAKKTFQAIRIEVNKELDVLEQAVGDSIDLLNPEGRICIITF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLED++ K F R + + H + IT+K + P+++++ N R+RSA Sbjct: 244 HSLEDKICKDIFRQRQKGCICPPEIPVCVCNHKPEIKIITRKPIEPSKDELMQNSRARSA 303 Query: 310 KLRAGMRTV 318 KLR + + Sbjct: 304 KLRVAEKII 312 >gi|46908277|ref|YP_014666.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes serotype 4b str. F2365] gi|254826203|ref|ZP_05231204.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL J1-194] gi|255520499|ref|ZP_05387736.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL J1-175] gi|51316263|sp|Q71XX2|RSMH_LISMF RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|46881548|gb|AAT04843.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes serotype 4b str. F2365] gi|293595444|gb|EFG03205.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL J1-194] Length = 312 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 105/311 (33%), Positives = 176/311 (56%), Gaps = 9/311 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H VLL + + +L P + +DAT G G+S ++ A D+D A+ Sbjct: 1 MFKHETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + DY ++ + +A F +++ + ++G VDG+++DLGVSS Q+D +RGFS+ + Sbjct: 61 AKIKLADYSDKVTFIKANFRDMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQD 120 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM ++A VVN+ + +DL RI GEEK + +IA I +RR+ P +TT Sbjct: 121 AALDMRMDQEQELTAKIVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTG 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I+ + ++ HP R+FQA+RI VN+E+ + L A LK GG + V+ Sbjct: 181 ELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLLKPGGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K+ F + G + + + + F+ T+K +VP++E++ N R+R Sbjct: 241 TFHSLEDRITKQLFQEATKGPDLPPGLPVIPDEYKPDFKLATRKPIVPSEEELEQNNRAR 300 Query: 308 SAKLRAGMRTV 318 SAKLR + + Sbjct: 301 SAKLRVIEKII 311 >gi|304439975|ref|ZP_07399868.1| S-adenosyl-methyltransferase MraW [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371467|gb|EFM25080.1| S-adenosyl-methyltransferase MraW [Peptoniphilus duerdenii ATCC BAA-1640] Length = 314 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 109/310 (35%), Positives = 167/310 (53%), Gaps = 9/310 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 T +H+PVL + I LN + +D T G G+S K ++ +D+D FA+ Sbjct: 2 TNFEHIPVLFNETIEGLNIRENHIYMDCTIGGAGHSSEILKRLNGTGLLVGIDQDEFALY 61 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK 129 ++ +R+ + F LF F ++ + G VDG++ DLGVSS Q D RGFS+ Sbjct: 62 TSEKRLREIGDNFKLFNNNFELFRENLDSLGISKVDGILLDLGVSSHQFDEASRGFSYNY 121 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM+ S I+A D+VN + + L +I GEEK + R+A IVK R S +TT Sbjct: 122 DAPLDMRMNKSTRITAKDIVNTYSKEALMKIFYEYGEEKWSKRVAEFIVKARNSKTIETT 181 Query: 189 QDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L +I+ + +++ HPA R FQALRI N+E+ L + L ++L GG + V Sbjct: 182 FELVEIIKAAIPKGARSGGPHPAKRIFQALRIETNDELGVLRRSLGDMIESLNPGGRICV 241 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 +SFHSLEDR+VK F + + + + IT+K + ++E++A N R+ Sbjct: 242 ISFHSLEDRIVKDTFKYYYLDCICPPEVPVCTCNKKREIEIITRKPITASKEELAINNRA 301 Query: 307 RSAKLRAGMR 316 SAKLR + Sbjct: 302 HSAKLRIAEK 311 >gi|163761063|ref|ZP_02168140.1| S-adenosyl-methyltransferase protein [Hoeflea phototrophica DFL-43] gi|162281614|gb|EDQ31908.1| S-adenosyl-methyltransferase protein [Hoeflea phototrophica DFL-43] Length = 338 Score = 390 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 164/322 (50%), Positives = 215/322 (66%), Gaps = 2/322 (0%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+PVLL +V+A L AP ++I+D TFGAGGY+ + + G++VI DRDP A++ G E Sbjct: 19 HIPVLLREVLAALEAAPSQLIVDGTFGAGGYTAAILEAGASVIGFDRDPEAIANGAEMAA 78 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 + L A FS L ++V + +DG+V D+GVSSMQID +RGFSF + GPLDMRM+ Sbjct: 79 ASGGRLKLIHAQFSHLLEHVEEASLDGLVLDIGVSSMQIDEAERGFSFMRDGPLDMRMAQ 138 Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199 +GISA+DVVN+A DLTRI GILGEE+ A RIA AI R PF TT+ L+ LI+K Sbjct: 139 AGISAADVVNRAKASDLTRIFGILGEERHAGRIARAIEAERAKHPFSTTRQLAGLIEKVS 198 Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259 ++IHPATR FQALR +VN+E+ ELA L +AEKALK GG L+VV+FHSLEDR+VK Sbjct: 199 PRRPQDKIHPATRVFQALRTYVNDELGELATALFAAEKALKPGGRLVVVTFHSLEDRIVK 258 Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319 +FF RSGK RH+ A F +I K+ VV +E+ N R+RSAKLRAG+R+ Sbjct: 259 RFFQDRSGKASGSRHLPAVQERKATFTAIGKQPVVAGEEECEANPRARSAKLRAGLRSDA 318 Query: 320 RSIEDDSFVHLPRLPTLSQFRG 341 + S + LP +P L G Sbjct: 319 PAGPTGSDI-LP-VPNLVALGG 338 >gi|315639624|ref|ZP_07894764.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Enterococcus italicus DSM 15952] gi|315484585|gb|EFU75041.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Enterococcus italicus DSM 15952] Length = 318 Score = 390 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 102/311 (32%), Positives = 167/311 (53%), Gaps = 11/311 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H VL ++ + L P + +D T G G+S ++ A D+D A+ ++ Sbjct: 5 HYTVLKKETVEGLAIKPDGIYVDCTLGGAGHSEYLLSQLGPDGHLYAFDQDQKALDFAKQ 64 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++ + K Q + ++ F +L+ + + VDG+++DLGVSS Q+D +RGFS+ + Sbjct: 65 RLQSFVDKGQVTFIKSNFRELKSKLAELDVMKVDGILYDLGVSSPQLDEAERGFSYHQDA 124 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S SA D+VN + +L +I GEEK + +IA I + R + P +TT + Sbjct: 125 PLDMRMDQSASFSAHDLVNTYSYNELVKIFFRYGEEKFSKQIAREIERVRANQPIETTSE 184 Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I+ + ++ HPA R FQA+RI VN+E+ + + L A + L G + V++ Sbjct: 185 LVEIIKTAIPAPARRKGGHPAKRIFQAIRIAVNDELGAVEESLEQAIELLAIHGRISVIT 244 Query: 250 FHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDRLVK F S K + + + + + I +K + ++ ++ N RSRS Sbjct: 245 FHSLEDRLVKNMFKEYSQVKELPPGLPVIPDEYQPMLTVINRKPITASELELEENNRSRS 304 Query: 309 AKLRAGMRTVE 319 AKLR + E Sbjct: 305 AKLRIVEKVKE 315 >gi|166031196|ref|ZP_02234025.1| hypothetical protein DORFOR_00882 [Dorea formicigenerans ATCC 27755] gi|166029043|gb|EDR47800.1| hypothetical protein DORFOR_00882 [Dorea formicigenerans ATCC 27755] Length = 311 Score = 390 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 105/306 (34%), Positives = 168/306 (54%), Gaps = 9/306 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 H VLL + I LN P + +D T G GG++ C+ ++ +D+D A+ Sbjct: 4 KHKSVLLNETIDGLNIKPDGIYVDGTLGGGGHAYEVCRRLGEKGSIVGIDQDAAAIEAAS 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 ++D+ E+ ++ ++ + ++ + + G VDG+V DLGVSS Q+D +RGFS+++ P Sbjct: 64 ARLKDFGEKVTIVRSNYCDMKSKLHELGIDKVDGIVLDLGVSSYQLDTAERGFSYREDAP 123 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM ++A D+VN DL R++ GE+K A IA IV+ R P +TT +L Sbjct: 124 LDMRMDTRQKMTARDIVNDYTEADLYRVIRDYGEDKFAKNIAKHIVQARAVKPVETTAEL 183 Query: 192 SSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 S +I+ ++ + HPA R+FQA+RI +N E++ L L L GG L +++F Sbjct: 184 SEIIRASIPMKFQKKSGHPAKRTFQAIRIELNRELDVLRDSLDDMIDLLNPGGRLCIITF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK F + + ITKK ++P++E++ +N RS+SA Sbjct: 244 HSLEDRIVKSAFRKNENPCTCPPDFPVCVCGKKSKGSIITKKPILPSEEELEYNSRSKSA 303 Query: 310 KLRAGM 315 KLR Sbjct: 304 KLRIFE 309 >gi|263460426|sp|A5G8K8|RSMH_GEOUR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 312 Score = 390 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 124/308 (40%), Positives = 179/308 (58%), Gaps = 9/308 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 H+ V+ +VI L P G + +D T G GG++R + + +I DRD A++ Sbjct: 5 HHISVMAAEVIQYLAPRAGGIYVDGTLGGGGHARQILEASAPDGLLIGFDRDREAIAIAA 64 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQKSGP 132 E + Y E+ L Q F+ L + + + G+D + + D+GVSS Q+D RGFSFQ P Sbjct: 65 ERLAPYGERVRLVQRNFACLAETLDEMGIDAIDGFLLDVGVSSHQLDTAARGFSFQHDAP 124 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM SG SASD+VN + DL RI+ GEE+ A RIA IVKRR+ +P +TT L Sbjct: 125 LDMRMDVSSGQSASDLVNTLSEADLARIIWDYGEERWAKRIAAFIVKRREESPIETTMQL 184 Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+ V + + R+HPATR+FQALRI VN+E+ L + L + + LK GG +V+SF Sbjct: 185 VDVIKGAVPRGAWDVRLHPATRTFQALRIAVNDELASLEKALAAGVRFLKKGGRGVVISF 244 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK F S + + + + + IT K V+ + +V+ N RSRSA Sbjct: 245 HSLEDRIVKTSFRSFAQGCTCPKSIPRCVCGKLPLVKVITGKPVMANEAEVSMNPRSRSA 304 Query: 310 KLRAGMRT 317 +LRA + Sbjct: 305 RLRAAEKI 312 >gi|295399706|ref|ZP_06809687.1| S-adenosyl-methyltransferase MraW [Geobacillus thermoglucosidasius C56-YS93] gi|312111775|ref|YP_003990091.1| S-adenosyl-methyltransferase MraW [Geobacillus sp. Y4.1MC1] gi|294978109|gb|EFG53706.1| S-adenosyl-methyltransferase MraW [Geobacillus thermoglucosidasius C56-YS93] gi|311216876|gb|ADP75480.1| S-adenosyl-methyltransferase MraW [Geobacillus sp. Y4.1MC1] Length = 310 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 105/309 (33%), Positives = 171/309 (55%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H VLL++ + L+ P +D T G GG+S + A D+D A+ Sbjct: 1 MFQHTTVLLKEAVDGLHINPDGTYVDCTLGGGGHSEYLLSQLSEKGRLFAFDQDDMAIEY 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130 ++ + Y++Q + + F L + + +GV DG++FDLGVSS Q+D +RGFS+ Sbjct: 61 AKKRLARYEKQVTFIRRNFRFLAEELAARGVHKVDGILFDLGVSSPQLDTPERGFSYHHD 120 Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM+ ++A D+VN + L I GEEK + ++A I + R+ +TT Sbjct: 121 APLDMRMNREQPLTAYDIVNHWPYEKLVHIFFHYGEEKFSKQVARKIEEVRKEKRIETTG 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L ++I++ + ++ + HPA R FQA+RI VN+E++ + + A LK+GG + V+ Sbjct: 181 ELVNIIKEAIPAPARRSGGHPAKRIFQAIRIAVNDELQAFQEAITQAIDVLKSGGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F S + + + + ITKK +VP++E+VA N R+R Sbjct: 241 TFHSLEDRICKATFKKASQSPQLPPGLPLIPEQYRPTLKMITKKPIVPSEEEVAHNHRAR 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRIAEK 309 >gi|328957120|ref|YP_004374506.1| S-adenosyl-methyltransferase MraW [Carnobacterium sp. 17-4] gi|328673444|gb|AEB29490.1| S-adenosyl-methyltransferase MraW [Carnobacterium sp. 17-4] Length = 318 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 111/312 (35%), Positives = 174/312 (55%), Gaps = 11/312 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 T +H VLL + + L+ +P + +D T G G+S ++ A D+D A+ Sbjct: 2 TAFNHETVLLRETVDGLSLSPEGIYVDCTLGGAGHSEYLLSQLDENGHLFAFDQDERAIE 61 Query: 73 CGQETMRDYKEQ--FSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSF 127 + + +Y E+ + +A F +++ + ++G VDG+++DLGVSS Q+D +RGFS+ Sbjct: 62 NAKVRLAEYVEKGMVTFIKANFRNIKEELTERGINEVDGILYDLGVSSPQLDEAERGFSY 121 Query: 128 QKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + PLDMRM ++A DVVN+ + DL RI GEEK + +IA I R+ P + Sbjct: 122 HQDAPLDMRMDTDAPLTAKDVVNEWSYHDLIRIFYRYGEEKFSKQIARKIEAAREIKPIE 181 Query: 187 TTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT +L LI+ + ++ HPA R FQA+RI VN+E+ + L A + L GG + Sbjct: 182 TTSELVELIKSGIPAPARRKGGHPAKRVFQAIRIAVNDELSSVEDSLEQAIELLAIGGRI 241 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 V+SFHSLEDR+VK F S R + + + IT+K ++P++E++A N Sbjct: 242 SVISFHSLEDRIVKTIFKDHSKGPELPRGLPVIPDGFLPELKLITRKPILPSEEELAVNN 301 Query: 305 RSRSAKLRAGMR 316 RSRSAKLR + Sbjct: 302 RSRSAKLRIAEK 313 >gi|104773820|ref|YP_618800.1| S-adenosyl-methyltransferase MraW [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|122983974|sp|Q1GAU0|RSMH_LACDA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263460423|sp|Q04B77|RSMH_LACDB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|103422901|emb|CAI97563.1| S-adenosyl-methyltransferase MraW [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|325125484|gb|ADY84814.1| S-adenosyl-methyltransferase mraW [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 314 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 106/310 (34%), Positives = 167/310 (53%), Gaps = 12/310 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76 H VLL + I L P G +DATFG GG++R + N+I D+D +A+ Q Sbjct: 4 KHTSVLLHETIDNLAPQSGGTYVDATFGGGGHARYLLRKLDKGNLIGFDQDQYAIDTAQS 63 Query: 77 TMRDY-----KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + + + L FS L++ + G+DG+ +DLGVSS Q+D +RGFS++ Sbjct: 64 NFAAFLKEDSQPRLQLVHNNFSHLKEELAKLGISGIDGIYYDLGVSSPQLDQAERGFSYR 123 Query: 129 KSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 LDMRM S A +VNQ + K L +L G+EK + +IA IV+RR+ P +T Sbjct: 124 FDARLDMRMDQSQDFDAYQLVNQYDQKQLADVLYRYGDEKFSRQIARKIVERRRGKPIET 183 Query: 188 TQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T +L +I++ + + + HPA +SFQA+R+ VN+E++ L L A L GG + Sbjct: 184 TFELVEIIKEAIPAAARRRGGHPAKKSFQAIRVEVNHELDVLRASLEEAISLLNPGGRIS 243 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V++F SLED++VK+ F S + + + + +K + ++E++A N RS Sbjct: 244 VITFQSLEDKIVKQTFKKYSEVEIPRGMPVVPEGIKPTLRLVNRKSITASEEELAENNRS 303 Query: 307 RSAKLRAGMR 316 SAKLR + Sbjct: 304 HSAKLRVAEK 313 >gi|138894646|ref|YP_001125099.1| S-adenosyl-methyltransferase MraW [Geobacillus thermodenitrificans NG80-2] gi|196247745|ref|ZP_03146447.1| S-adenosyl-methyltransferase MraW [Geobacillus sp. G11MC16] gi|263455979|sp|A4IM00|RSMH_GEOTN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|134266159|gb|ABO66354.1| S-adenosyl-methyltransferase MraW [Geobacillus thermodenitrificans NG80-2] gi|196212529|gb|EDY07286.1| S-adenosyl-methyltransferase MraW [Geobacillus sp. G11MC16] Length = 310 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 114/309 (36%), Positives = 172/309 (55%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H VLL++ + LN P V +D T G GG+S + A D+D A+ Sbjct: 1 MFQHTTVLLKEAVDGLNVRPDGVYVDCTLGGGGHSEYLLSRLSKRGKLFAFDQDETAILH 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 E + Y+EQ F LQ+ + G VDG++FDLGVSS Q+D +RGFS+Q Sbjct: 61 ASERLARYREQVQFINRNFRFLQEELSALGIHAVDGILFDLGVSSPQLDEPERGFSYQHD 120 Query: 131 GPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM ++A+++VN+ ++L RI GEEK + ++A I + R+ P +TT Sbjct: 121 APLDMRMDRKQRLTAAEIVNRWPYEELVRIFFRYGEEKFSKQVARKIEEVRRKRPIETTG 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I+ + ++ + HPA R FQALRI VN+E+E + L A + L GG + V+ Sbjct: 181 ELVEVIKAAIPAPARRSGGHPAKRIFQALRIAVNDELEAFREALEQAIELLAPGGRVSVI 240 Query: 249 SFHSLEDRLVKKFFASRSGK-VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K+ F S + + + + V + ITKK VVP+ E++ N R+R Sbjct: 241 TFHSLEDRICKETFKKASESPPLPPGLPVLPDDYRPVLKIITKKPVVPSAEELERNNRAR 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRIAEK 309 >gi|116873471|ref|YP_850252.1| S-adenosyl-methyltransferase MraW [Listeria welshimeri serovar 6b str. SLCC5334] gi|123461323|sp|A0AKE1|RSMH_LISW6 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|116742349|emb|CAK21473.1| S-adenosyl-methyltransferase [Listeria welshimeri serovar 6b str. SLCC5334] Length = 312 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 105/311 (33%), Positives = 175/311 (56%), Gaps = 9/311 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H VLL + + +L P + +DAT G G+S ++ A D+D A+ Sbjct: 1 MFKHETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEQGHLFAFDQDQTAIDN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + DY ++ + +A F +++ + ++G VDG+++DLGVSS Q+D +RGFS+ + Sbjct: 61 AKMKLADYSDKVTFIKANFRYMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQD 120 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM ++A VVN+ + +DL RI GEEK + +IA I +RR+ P +TT Sbjct: 121 AALDMRMDQEQELTAKIVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTG 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I+ + ++ HP R+FQA+RI VN+E+ + L A LK GG + V+ Sbjct: 181 ELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLLKPGGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F + G + + + + F+ T+K +VP++E++ N R+R Sbjct: 241 TFHSLEDRITKHLFQEATKGPELPPGLPVIPDEYKPDFKLATRKPIVPSEEELEQNNRAR 300 Query: 308 SAKLRAGMRTV 318 SAKLR + + Sbjct: 301 SAKLRVIEKII 311 >gi|257413358|ref|ZP_04742795.2| S-adenosyl-methyltransferase MraW [Roseburia intestinalis L1-82] gi|257203798|gb|EEV02083.1| S-adenosyl-methyltransferase MraW [Roseburia intestinalis L1-82] Length = 315 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 105/308 (34%), Positives = 168/308 (54%), Gaps = 10/308 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H VLL + I LN P + +D T G GG+S K +I +D+D A+ Sbjct: 7 HHYSVLLNETIENLNIRPDGIYVDGTLGGGGHSYQILKRLGENGRLIGIDQDADAIQAAG 66 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK-SG 131 E + ++ + +L ++ ++ +++ + GVDG+V DLGVSS Q+D +RGF++++ Sbjct: 67 ERLAEFGNKATLIRSNYANMKEELHAIGVNGVDGIVLDLGVSSFQLDTPERGFTYREPDA 126 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM +A D+VN + DL RI+ GE+K A IA IVK RQ +T + Sbjct: 127 PLDMRMDDRQSQTAKDIVNGYSEMDLYRIIRDYGEDKFAKNIAKHIVKERQKKTIETAGE 186 Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+ + + HPA R+FQA+RI +N+E+E L+ L L GG + +++ Sbjct: 187 LTDIIRAAIPMKVQVTGGHPAKRTFQAIRIELNHELEVLSDHLDEMIDLLNPGGRICIIT 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK F + + + IT+K ++P+++++ N RS+S Sbjct: 247 FHSLEDRIVKSNFKRNENPCTCPSDFPVCVCGKVSKGKVITRKPILPSEKELEENSRSKS 306 Query: 309 AKLRAGMR 316 AKLR R Sbjct: 307 AKLRVFER 314 >gi|47093593|ref|ZP_00231351.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes str. 4b H7858] gi|47018017|gb|EAL08792.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes str. 4b H7858] gi|328466075|gb|EGF37248.1| 16S rRNA m(4)C1402 methyltranserfase [Listeria monocytogenes 1816] Length = 312 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 105/311 (33%), Positives = 176/311 (56%), Gaps = 9/311 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H VLL + + +L P + +DAT G G+S ++ A D+D A++ Sbjct: 1 MFKHETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAINN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + DY ++ + +A F +++ + ++G VDG+++DLGVSS Q+D +RGFS+ + Sbjct: 61 AKIKLADYSDKVTFIKANFRDMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQD 120 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM ++A VVN+ + +DL RI GEEK + +IA I +RR+ P +TT Sbjct: 121 AALDMRMDQEQELTAKIVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTG 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I+ + ++ HP R+FQA+RI VN+E+ + L A LK GG + V+ Sbjct: 181 ELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLLKPGGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F + G + + + + F+ T+K +VP++E++ N R+R Sbjct: 241 TFHSLEDRITKHLFQEATKGPDLPPGLPVIPDEYKPDFKLATRKPIVPSEEELEQNNRAR 300 Query: 308 SAKLRAGMRTV 318 SAKLR + + Sbjct: 301 SAKLRVIEKII 311 >gi|226224647|ref|YP_002758754.1| hypothetical protein Lm4b_02062 [Listeria monocytogenes Clip81459] gi|254854022|ref|ZP_05243370.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL R2-503] gi|254933469|ref|ZP_05266828.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes HPB2262] gi|300765476|ref|ZP_07075457.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL N1-017] gi|263456339|sp|C1KWZ4|RSMH_LISMC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|225877109|emb|CAS05821.1| Hypothetical protein of unknown function [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258607414|gb|EEW20022.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL R2-503] gi|293585031|gb|EFF97063.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes HPB2262] gi|300513787|gb|EFK40853.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL N1-017] gi|332312491|gb|EGJ25586.1| Ribosomal RNA small subunit methyltransferase H [Listeria monocytogenes str. Scott A] Length = 312 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 105/311 (33%), Positives = 175/311 (56%), Gaps = 9/311 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H VLL + + +L P + +DAT G G+S ++ A D+D A+ Sbjct: 1 MFKHETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + DY ++ + +A F +++ + ++G VDG+++DLGVSS Q+D +RGFS+ + Sbjct: 61 AKIKLADYSDKVTFIKANFRDMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQD 120 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM ++A VVN+ + +DL RI GEEK + +IA I +RR+ P +TT Sbjct: 121 AALDMRMDQEQELTAKIVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTG 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I+ + ++ HP R+FQA+RI VN+E+ + L A LK GG + V+ Sbjct: 181 ELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLLKPGGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F + G + + + + F+ T+K +VP++E++ N R+R Sbjct: 241 TFHSLEDRITKHLFQEATKGPDLPPGLPVIPDEYKPDFKLATRKPIVPSEEELEQNNRAR 300 Query: 308 SAKLRAGMRTV 318 SAKLR + + Sbjct: 301 SAKLRVIEKII 311 >gi|320547904|ref|ZP_08042187.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus equinus ATCC 9812] gi|320447444|gb|EFW88204.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus equinus ATCC 9812] Length = 319 Score = 389 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 109/323 (33%), Positives = 170/323 (52%), Gaps = 15/323 (4%) Query: 6 CKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVI 62 K M+ H H+ VLL + + +L+ P + +DAT G G+S ++ Sbjct: 1 MKGMTKDFH-----HITVLLHETVDMLDIKPDGIYVDATLGGAGHSEYLLSKLGPNGHLY 55 Query: 63 ALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQ 117 A D+D A+ Q ++DY K Q + + F L + GV DG+++DLGVSS Q Sbjct: 56 AFDQDQTAIDNAQIRLKDYIEKGQVTFIKDNFRNLASNLAMHGVTEIDGILYDLGVSSPQ 115 Query: 118 IDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 +D +RGFS++K PLDMRM+ ++A DVVN + DL RI GE+K + +IA I Sbjct: 116 LDERERGFSYKKDAPLDMRMNREQDLTAYDVVNTYDYHDLVRIFYKYGEDKFSKQIARKI 175 Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 + RQ P +TT +L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A Sbjct: 176 EQARQVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQA 235 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295 L G + V++FHSLEDRL K+ F S + + + +K ++P Sbjct: 236 IDLLVVDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDMQPKLALVNRKPILP 295 Query: 296 TQEDVAFNRRSRSAKLRAGMRTV 318 +QE++ N RS SAKLR + Sbjct: 296 SQEELEANNRSHSAKLRVARKVR 318 >gi|325977602|ref|YP_004287318.1| S-adenosyl-methyltransferase MraW [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325177530|emb|CBZ47574.1| S-adenosyl-methyltransferase MraW [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 324 Score = 389 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 113/324 (34%), Positives = 175/324 (54%), Gaps = 17/324 (5%) Query: 6 CKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVI 62 K M++ H H+ VLL + + +L+ P V +DAT G G+S ++ Sbjct: 6 MKGMTTDFH-----HITVLLHETVDMLDIKPDGVYVDATLGGAGHSEYLLSKLGPTGHLY 60 Query: 63 ALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQ 117 A D+D A+ Q ++DY K Q + + F L + GV DG+++DLGVSS Q Sbjct: 61 AFDQDQTAIDNAQIRLKDYIEKGQVTFIKDNFRNLASNLASHGVTEIDGILYDLGVSSPQ 120 Query: 118 IDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 +D +RGFS++K PLDMRM+ +SA DVVN + DL RI GE+K + +IA I Sbjct: 121 LDERERGFSYKKDAPLDMRMNRDQDLSAYDVVNTYDYHDLVRIFFKYGEDKFSKQIARKI 180 Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 + R+ P +TT +L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A Sbjct: 181 EQARKVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQA 240 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVV 294 + L G + V++FHSLEDRL K+ F S V IP + P + +K ++ Sbjct: 241 IELLAVDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPEDMQPK-LALVNRKPIL 299 Query: 295 PTQEDVAFNRRSRSAKLRAGMRTV 318 P++E++ N RS SAKLR + Sbjct: 300 PSEEELEVNNRSHSAKLRVARKVR 323 >gi|313622989|gb|EFR93285.1| S-adenosyl-methyltransferase MraW [Listeria innocua FSL J1-023] Length = 312 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 103/311 (33%), Positives = 176/311 (56%), Gaps = 9/311 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H VLL + + +L P + +DAT G G+S ++ A D+D A+ Sbjct: 1 MFKHETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + +Y ++ + ++ F +++ + ++G VDG+++DLGVSS Q+D +RGFS+ + Sbjct: 61 AKIKLAEYSDKVTFIKSNFRYMKETLNERGIEAVDGILYDLGVSSPQLDERERGFSYHQD 120 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM ++A VVN+ + +DL RI GEEK + +IA I +RR+ P +TT Sbjct: 121 AALDMRMDQEQELTAKKVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTG 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I+ + ++ HP R+FQA+RI VN+E+ + L +A LK GG + V+ Sbjct: 181 ELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLENALTLLKPGGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F + G + + + + F+ T+K +VP++E++ N R+R Sbjct: 241 TFHSLEDRITKHLFQEATKGPDLPPGLPVIPDEYKPDFKLATRKPIVPSEEELEQNNRAR 300 Query: 308 SAKLRAGMRTV 318 SAKLR + + Sbjct: 301 SAKLRVIEKII 311 >gi|16804080|ref|NP_465565.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes EGD-e] gi|224498509|ref|ZP_03666858.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes Finland 1988] gi|224501159|ref|ZP_03669466.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL R2-561] gi|254827071|ref|ZP_05231758.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL N3-165] gi|284802488|ref|YP_003414353.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes 08-5578] gi|284995630|ref|YP_003417398.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes 08-5923] gi|20138988|sp|Q8Y5L7|RSMH_LISMO RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|16411511|emb|CAD00119.1| lmo2041 [Listeria monocytogenes EGD-e] gi|258599454|gb|EEW12779.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL N3-165] gi|284058050|gb|ADB68991.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes 08-5578] gi|284061097|gb|ADB72036.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes 08-5923] Length = 312 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 104/311 (33%), Positives = 176/311 (56%), Gaps = 9/311 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H VLL + + +L P + +DAT G G+S ++ A D+D A+ Sbjct: 1 MFKHETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + DY ++ + +A F +++ + ++G VDG+++DLGVSS Q+D +RGFS+ + Sbjct: 61 AKIKLADYSDKVTFIKANFRDMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQD 120 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM ++A VVN+ + +DL RI GEEK + +IA I +RR+ P +TT Sbjct: 121 AALDMRMDQEQELTAKTVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTG 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I+ + ++ HP R+FQA+RI VN+E+ + L A +K GG + V+ Sbjct: 181 ELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLIKPGGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K+ F + G + + + + F+ T+K +VP++E++ N R+R Sbjct: 241 TFHSLEDRITKQLFQEATKGPDLPPGLPVIPDEYKPDFKLATRKPIVPSEEELEQNNRAR 300 Query: 308 SAKLRAGMRTV 318 SAKLR + + Sbjct: 301 SAKLRVIEKII 311 >gi|313905185|ref|ZP_07838553.1| S-adenosyl-methyltransferase MraW [Eubacterium cellulosolvens 6] gi|313469938|gb|EFR65272.1| S-adenosyl-methyltransferase MraW [Eubacterium cellulosolvens 6] Length = 326 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 111/316 (35%), Positives = 166/316 (52%), Gaps = 9/316 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 H VLL + I L P + +D T G GG+S CK G +I +D+D A+ Q Sbjct: 4 KHKSVLLTETIDHLAIKPEGIYVDGTLGGGGHSYEICKRLSGGGRLIGIDQDEDAIRAAQ 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + YK++ ++ + + + + + GV DG++ DLGVSS Q+D +RGF++++ Sbjct: 64 ARLAKYKDRVTILRGNYRNMVQMLAEIGVTSVDGILLDLGVSSYQLDTAERGFTYREDTR 123 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM SA DVVN + L +++ GEEK A IA I RQ P +TT +L Sbjct: 124 LDMRMDRRQPFSAFDVVNSYTKEKLYQVIRDYGEEKFAENIAKHICLERQKKPVETTGEL 183 Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 + +I+ + + N HPA R+FQA+RI VN E++ L L L GG L V++F Sbjct: 184 AEIIKGAIPAKLRANGGHPAKRTFQAIRIEVNAELDVLKDSLDGMIDILNDGGRLCVITF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK F + + + ++T+K +VPT E++ FN RS+S+ Sbjct: 244 HSLEDRIVKNNFRRNENPCICPPQFPVCVCGKKSKGSTVTRKPIVPTAEEMEFNPRSKSS 303 Query: 310 KLRAGMRTVERSIEDD 325 KLR R D Sbjct: 304 KLRVFERKRVPDSGGD 319 >gi|332799086|ref|YP_004460585.1| Ribosomal RNA small subunit methyltransferase H [Tepidanaerobacter sp. Re1] gi|332696821|gb|AEE91278.1| Ribosomal RNA small subunit methyltransferase H [Tepidanaerobacter sp. Re1] Length = 320 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 119/307 (38%), Positives = 172/307 (56%), Gaps = 9/307 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 HVP+LL K I +L+P PG V +DAT G GG+ R K I +D+D A+S + Sbjct: 4 HHVPILLHKTIEMLDPKPGGVYVDATLGGGGHFRELLKKAEYEGTFIGIDQDEVAISTAK 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + L F L+ + + +DG++FDLGVSS Q D G RGFS+ K P Sbjct: 64 ENFSKFSYDIRLIHDNFYNLKKIIKENKLSEIDGILFDLGVSSYQFDEGSRGFSYNKDAP 123 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM +SA DVVN+ + +L +I+ GEE A RIA I + R TT +L Sbjct: 124 LDMRMDQRKTLSAKDVVNKMSRDELKQIISEYGEESWAGRIADFICEARSRKEITTTGEL 183 Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+ + + HPA ++FQALRI+VN E+E L ++ A + LK GG + V++F Sbjct: 184 VEIIKNAIPARARRKGGHPARKTFQALRIYVNEELEILDSSIKDAVELLKPGGRICVITF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK F + + + +I + H V + +T K + P+QE++ N R+RSA Sbjct: 244 HSLEDRIVKNAFKLLATACICPKEALICTCNHTKVLKVLTSKPIYPSQEEIESNPRARSA 303 Query: 310 KLRAGMR 316 KLR + Sbjct: 304 KLRVAQK 310 >gi|291544487|emb|CBL17596.1| S-adenosyl-methyltransferase MraW [Ruminococcus sp. 18P13] Length = 307 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 125/305 (40%), Positives = 170/305 (55%), Gaps = 9/305 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 H+ VL E+ I L P + +D T G G++ K+ G +IALDRDP AV Sbjct: 4 HHISVLPEETIEGLGVKPDGIYVDGTVGGAGHALRIAKLLTDGGKLIALDRDPDAVKTAD 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + Y Q+ FSQ++ + G VDGV+ DLGVSS Q+D G RGFS+ P Sbjct: 64 KRLAQYPAVV--VQSNFSQIRQVLDSLGISLVDGVLLDLGVSSHQLDTGSRGFSYHVDAP 121 Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 LDMRMS +G+SA D+VN A+ ++L RIL GEEK A RI IV+ RQ P +TT L+ Sbjct: 122 LDMRMSQTGVSARDLVNTASPEELVRILFEYGEEKFARRIVAEIVEARQKEPIETTLQLA 181 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 LI+ V +P ++FQA+RI VN E++ L GL +A LK GG L V++FHS Sbjct: 182 ELIKAGVPAKARREKNPCKKTFQAIRIAVNGELDHLTSGLDAAFACLKPGGRLAVITFHS 241 Query: 253 LEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDRLVK+ FA + + H + + +K + E++ N RSRSAKL Sbjct: 242 LEDRLVKQKFAGWCKGCICPPDFPVCVCGHTPQGRLVNRKPIEAKPEELEENNRSRSAKL 301 Query: 312 RAGMR 316 R R Sbjct: 302 RIIER 306 >gi|332654098|ref|ZP_08419842.1| S-adenosyl-methyltransferase MraW [Ruminococcaceae bacterium D16] gi|332517184|gb|EGJ46789.1| S-adenosyl-methyltransferase MraW [Ruminococcaceae bacterium D16] Length = 327 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 121/315 (38%), Positives = 179/315 (56%), Gaps = 8/315 (2%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVS 72 H PVLL++ I LN P + LD T G G+SR + +I +DRD A+ Sbjct: 2 SETFTHRPVLLDECIEALNIRPDGIYLDGTLGRAGHSREIARRLTTGRLICVDRDQAALD 61 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 Q+ ++D+ ++ +L + F QL + GVDG++FDLGVSS Q+D G RGFS+ Sbjct: 62 AAQDRLKDWMDRVTLVHSNFDQLDAILDRLGLAGVDGMLFDLGVSSPQLDDGSRGFSYMA 121 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM S G++A+DVVNQ + ++L RIL GEE+ A IA AIV+RRQ P +TT Sbjct: 122 DAPLDMRMDRSEGLTAADVVNQWSQEELRRILSQYGEERYAPSIAAAIVRRRQDKPIETT 181 Query: 189 QDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L +I+ + + HPA RSFQA+RI VN+E+ + + +R+A L GG L V Sbjct: 182 LELVDIIKSAMPARALKEKQHPAKRSFQAIRIAVNDELASVDRMVRAAIPRLNKGGRLAV 241 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 ++FHSLEDR+VK A + + + +K ++P++ +V N R+ Sbjct: 242 ITFHSLEDRIVKTDLAEFAKGCTCPPDFPVCVCGKTPDVKLTPRKPILPSEREVEENPRA 301 Query: 307 RSAKLRAGMRTVERS 321 RSAKLR + + + Sbjct: 302 RSAKLRVAEKLKDPT 316 >gi|313884959|ref|ZP_07818711.1| S-adenosyl-methyltransferase MraW [Eremococcus coleocola ACS-139-V-Col8] gi|312619650|gb|EFR31087.1| S-adenosyl-methyltransferase MraW [Eremococcus coleocola ACS-139-V-Col8] Length = 318 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 111/310 (35%), Positives = 182/310 (58%), Gaps = 11/310 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H VLL + I L+ P + +D T G G++ + ++ A D+D A+ Q Sbjct: 5 KHTSVLLHETIDQLDINPNGIYVDCTLGGAGHAAYLLSLLSPKGHLYAFDQDMNAIKNAQ 64 Query: 76 ETMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + DY K+Q + A F+QL++ + ++GV DG+ +DLGVSS Q+D +RGFS++K Sbjct: 65 DRLHDYIEKDQVTFIHANFAQLKEQLAERGVSYVDGIYYDLGVSSPQLDQAERGFSYKKE 124 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM+ ++A ++VN+ + + +I+ GEE+ A RI AI + R++ P +TT Sbjct: 125 APLDMRMNQEDKLTAYEIVNEWPYEKIVKIIDHYGEERFAKRITRAIEQARKNKPIETTL 184 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ ++++ + + + + HPA R+FQA+RI VN+E+ + L A LK GG + V+ Sbjct: 185 ELAEIVKEAIPAATRRSGGHPAKRTFQAIRIAVNDELNVIETSLNQAFTLLKVGGRISVI 244 Query: 249 SFHSLEDRLVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 SFHSLEDR+VK+ F +S + + I A F + +K ++ +QE++ N RSR Sbjct: 245 SFHSLEDRIVKQLFRDKSSRPDLPPNLPILPERTEADFALVNRKPILASQEELDENNRSR 304 Query: 308 SAKLRAGMRT 317 SAKLR R Sbjct: 305 SAKLRVIQRN 314 >gi|313607742|gb|EFR83963.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL F2-208] Length = 312 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 104/311 (33%), Positives = 175/311 (56%), Gaps = 9/311 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H VLL + + +L + +DAT G G+S ++ A D+D A+ Sbjct: 1 MFKHETVLLHETVDMLEVKSDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + DY ++ + +A F +++ + ++G VDG+++DLGVSS Q+D +RGFS+ + Sbjct: 61 AKIKLADYSDKVTFIKANFRDMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQD 120 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM ++A VVN+ + +DL RI GEEK + +IA I +RR+ P +TT Sbjct: 121 AALDMRMDQEQELTAKTVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTG 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I+ + ++ HP R+FQA+RI VN+E+ + L A LK GG + V+ Sbjct: 181 ELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLLKPGGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K+ F + G + + + + F+ T+K +VP++E++ N R+R Sbjct: 241 TFHSLEDRITKQLFQEATKGPDLPPGLPVIPDEYKPDFKLATRKPIVPSEEELEQNNRAR 300 Query: 308 SAKLRAGMRTV 318 SAKLR + + Sbjct: 301 SAKLRVIEKII 311 >gi|154505717|ref|ZP_02042455.1| hypothetical protein RUMGNA_03257 [Ruminococcus gnavus ATCC 29149] gi|153794014|gb|EDN76434.1| hypothetical protein RUMGNA_03257 [Ruminococcus gnavus ATCC 29149] Length = 315 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 102/317 (32%), Positives = 169/317 (53%), Gaps = 12/317 (3%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALD 65 M ++ H VLLE+ + L P + +DAT G GG++ I +D Sbjct: 1 MEDSM---AFKHTSVLLEETVDGLKVKPDGIYVDATLGGGGHAYEVASRLSDKGRFIGID 57 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGD 122 +D A+ + + E+ ++ ++ + ++ + + G VDG+V DLGVSS Q+D + Sbjct: 58 QDADAIEAAGARLSGFGEKVTIIRSNYCDMKPRLHEIGIDKVDGIVIDLGVSSYQLDTAE 117 Query: 123 RGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFS++ PLDMRM +A D+VN + +L R++ GE+K A IA IV R Sbjct: 118 RGFSYRTDAPLDMRMDQRQTTTAKDIVNDYSEAELYRVIRDYGEDKFAKNIAKHIVMERG 177 Query: 182 SAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 P +TT L+ +I++ + + HP+ R+FQA+RI +N E++ L + L L Sbjct: 178 KHPIETTGQLNEVIRRAIPMKFQKTSGHPSKRTFQAIRIELNRELDVLRETLDDMIDMLN 237 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQED 299 GG + +++FHSLEDR+VK F H + + + + IT+K ++P++E+ Sbjct: 238 PGGRICIITFHSLEDRIVKSAFRKNENPCTCPSHFPVCVCGNISKGKVITRKPILPSEEE 297 Query: 300 VAFNRRSRSAKLRAGMR 316 + +N RS+SAKLR R Sbjct: 298 LMYNSRSKSAKLRIFER 314 >gi|268610557|ref|ZP_06144284.1| S-adenosyl-methyltransferase MraW [Ruminococcus flavefaciens FD-1] Length = 313 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 117/308 (37%), Positives = 173/308 (56%), Gaps = 8/308 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQ 75 H+PV+L + I L P + +D T G G+S + +IALDRDP AV+ Sbjct: 4 HHIPVMLTECIEGLAIDPDGIYVDGTAGGAGHSSAIAAKLSEKGRLIALDRDPDAVAVAT 63 Query: 76 ETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + + + + +S+++ D + VDG++ DLGVSS Q+D G RGFS+ P Sbjct: 64 ERLSKF-SNAQVIHSNYSEIRSVLDRLEIDSVDGILMDLGVSSFQLDEGSRGFSYHTDAP 122 Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 LDMRMS G SA+D+VN + +L RI+ GEEK + RIA I+K R+ AP +TT L+ Sbjct: 123 LDMRMSKVGTSAADIVNTYSEAELARIMFEYGEEKFSRRIASNIIKAREKAPVETTLQLA 182 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+++V +P ++FQALRI VN+E + L++GL A LK G L V++FHS Sbjct: 183 DIIRESVPQKARRDKNPCKKTFQALRIAVNSEFDHLSKGLEDAFYCLKPQGRLAVITFHS 242 Query: 253 LEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDRLVK+ FA+ + + + +K + +E++ N RSRSAKL Sbjct: 243 LEDRLVKQKFAAWCKGCICPPDFPQCVCGRKPEGRLVNRKPIEAGEEELENNNRSRSAKL 302 Query: 312 RAGMRTVE 319 R R+ E Sbjct: 303 RIIERSGE 310 >gi|315283083|ref|ZP_07871351.1| S-adenosyl-methyltransferase MraW [Listeria marthii FSL S4-120] gi|313613270|gb|EFR87146.1| S-adenosyl-methyltransferase MraW [Listeria marthii FSL S4-120] Length = 312 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 103/311 (33%), Positives = 176/311 (56%), Gaps = 9/311 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H VLL + + +L P + +DAT G G+S ++ A D+D A+ Sbjct: 1 MFKHETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + DY ++ + +A F +++ + ++G VDG+++DLGVSS Q+D +RGFS+ + Sbjct: 61 AEIKLADYSDKVTFIKANFRDMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQD 120 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM ++A +VN+ + +DL RI GEEK + +IA I +RR+ P +TT Sbjct: 121 AALDMRMDQEQELTAKTIVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTG 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I+ + ++ HP R+FQA+RI VN+E+ + L A +K GG + V+ Sbjct: 181 ELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLIKPGGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K+ F + G + + + + F+ T+K +VP++E++ N R+R Sbjct: 241 TFHSLEDRITKQLFQEATKGPDLPPGLPVIPDEYKPDFKLATRKPIVPSEEELEQNNRAR 300 Query: 308 SAKLRAGMRTV 318 SAKLR + + Sbjct: 301 SAKLRVIEKII 311 >gi|224541552|ref|ZP_03682091.1| hypothetical protein CATMIT_00722 [Catenibacterium mitsuokai DSM 15897] gi|224525519|gb|EEF94624.1| hypothetical protein CATMIT_00722 [Catenibacterium mitsuokai DSM 15897] Length = 315 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 110/314 (35%), Positives = 171/314 (54%), Gaps = 10/314 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73 + +H VLL++ I LN + +D T G GG+S + ++ D+D A+ Sbjct: 3 NMFEHYSVLLDETIDALNIKEDGIYVDCTLGGGGHSSRILEKLTTGHLYCFDQDAHAIEA 62 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E M + F++ A F +++ + +GV DG+VFDLGVSS Q D +RGFS+ Sbjct: 63 ARERMSQISDNFTIIHANFKEIKARLSMEGVYKVDGIVFDLGVSSPQFDNAERGFSYNTD 122 Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM+ +SA +VVN + +DL IL +EK A IA I K RQ P +TT Sbjct: 123 ARLDMRMNQEQPLSAYEVVNNYSYQDLVTILYKYADEKFAKSIARMIEKERQVKPIETTF 182 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +++K + + HPA R+FQA+RI VN+E+ + L + L GG + V+ Sbjct: 183 ELVEIVKKAIPARARRTGGHPAKRTFQAIRIEVNDELNVFERALTDSLDLLNVGGRVAVI 242 Query: 249 SFHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 SFHSLED++ K F ++ + +IP P F+ +T+K +V +++++ NRRS Sbjct: 243 SFHSLEDKITKYMFNEKTAVPDLPMGMPVIPEEYQPH-FKKVTRKPIVADEKELSENRRS 301 Query: 307 RSAKLRAGMRTVER 320 SAKLR R + Sbjct: 302 HSAKLRVIERIRDE 315 >gi|301300385|ref|ZP_07206587.1| S-adenosyl-methyltransferase MraW [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851987|gb|EFK79669.1| S-adenosyl-methyltransferase MraW [Lactobacillus salivarius ACS-116-V-Col5a] Length = 314 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 107/309 (34%), Positives = 168/309 (54%), Gaps = 11/309 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H+ VLL + + LN P +D T G GG+S + + D+D A++ + Sbjct: 5 KHITVLLNEAVDGLNIKPDGTYVDCTLGGGGHSGLILSKLSENGKLYSFDQDITAINFNK 64 Query: 76 ETMRDYKE--QFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + ++ E + + ++ F + + + + GVDG+++DLGVSS Q D DRGFS+ Sbjct: 65 DKFKEENELGKINFIKSNFRNISEELNKRNILGVDGILYDLGVSSPQFDNADRGFSYNYD 124 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM S ++A DVVN + + L RI GEEK A IA I K RQ P +TT Sbjct: 125 APLDMRMDQSQSLTARDVVNDWSYEQLVRIFFRYGEEKFAKSIARRIEKVRQQTPIETTG 184 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L LI++ + + HPA ++FQA+RI VN+E+ L + L A L GG + V+ Sbjct: 185 QLVDLIKEAIPAKARRKGGHPAKKTFQAIRIAVNDELGALEESLEQALDLLNPGGRISVI 244 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +F SLEDRLVK F ++ + + ++ ++ IT+K +VP+++++ N R+ Sbjct: 245 TFQSLEDRLVKVMFKQKTNLPELPPGLPVIPDSQKVEYKLITRKPIVPSEDEITHNNRAH 304 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 305 SAKLRIIEK 313 >gi|317496841|ref|ZP_07955171.1| MraW methylase [Lachnospiraceae bacterium 5_1_63FAA] gi|316895853|gb|EFV18005.1| MraW methylase [Lachnospiraceae bacterium 5_1_63FAA] Length = 312 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 97/307 (31%), Positives = 172/307 (56%), Gaps = 9/307 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H+ VLL++ I L+ P + +D T G GG++ C+ I +D+D A++ Sbjct: 4 KHISVLLDETIEELHIKPDGIYVDGTLGGGGHAYHVCQKLSEKGRYIGIDQDADAIAAST 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + +K++ ++ + + + + D G VDG++ DLGVSS Q+D +RGF++++ P Sbjct: 64 KRLESFKDKVTIVRDNYVNMPKVLHDLGIEHVDGILLDLGVSSFQLDDKERGFTYREDVP 123 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM ++A D+VN+ + +L I+ GEEK A IA IV +R+ +P +TT L Sbjct: 124 LDMRMDQRQSLTARDIVNEYSEMELFHIIRDYGEEKFAKNIAKHIVNKRKESPIETTGQL 183 Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+ + + HPA ++FQA+RI N E++ L + + L GG L +++F Sbjct: 184 IEVIKSAIPMKVRAVGGHPAKKTFQAIRIECNRELDVLKDSIDAMIDLLNPGGRLCIITF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK+ F + + + + +T+K ++P +E++ +N+R++S+ Sbjct: 244 HSLEDRIVKRAFKKNENPCTCPPNFPVCVCGNVSKGKQLTRKPIIPGEEELEYNKRAKSS 303 Query: 310 KLRAGMR 316 KLR R Sbjct: 304 KLRVFER 310 >gi|306830621|ref|ZP_07463786.1| S-adenosyl-methyltransferase MraW [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304427129|gb|EFM30236.1| S-adenosyl-methyltransferase MraW [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 324 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 112/324 (34%), Positives = 175/324 (54%), Gaps = 17/324 (5%) Query: 6 CKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVI 62 K M++ H H+ VLL + + +L+ P V +DAT G G+S ++ Sbjct: 6 MKGMTTDFH-----HITVLLHETVDMLDIKPDGVYVDATLGGAGHSEYLLSKLGTTGHLY 60 Query: 63 ALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQ 117 A D+D A+ Q ++DY K Q + + F L + GV DG+++DLGVSS Q Sbjct: 61 AFDQDQTAIDNAQIRLKDYIEKGQVTFIKDNFRNLASNLASHGVTEIDGILYDLGVSSPQ 120 Query: 118 IDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 +D +RGFS++K PLDMRM+ +SA +VVN + DL RI GE+K + +IA I Sbjct: 121 LDERERGFSYKKDAPLDMRMNRDQDLSAYNVVNTYDYHDLVRIFFKYGEDKFSKQIARKI 180 Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 + R+ P +TT +L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A Sbjct: 181 EQARKVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQA 240 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVV 294 + L G + V++FHSLEDRL K+ F S V IP + P + +K ++ Sbjct: 241 IELLAVDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPEDMQPK-LALVNRKPIL 299 Query: 295 PTQEDVAFNRRSRSAKLRAGMRTV 318 P++E++ N RS SAKLR + Sbjct: 300 PSEEELEVNNRSHSAKLRVARKVR 323 >gi|227891048|ref|ZP_04008853.1| S-adenosyl-methyltransferase [Lactobacillus salivarius ATCC 11741] gi|227867137|gb|EEJ74558.1| S-adenosyl-methyltransferase [Lactobacillus salivarius ATCC 11741] Length = 323 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 108/309 (34%), Positives = 168/309 (54%), Gaps = 11/309 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H+ VLL + + LN P +D T G GG+S + + D+D A++ + Sbjct: 14 KHITVLLNEAVDGLNIKPDGTYVDCTLGGGGHSGLILSKLSENGKLYSFDQDITAINFNK 73 Query: 76 ETMRDYKE--QFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + ++ E + + ++ F + + + + GVDG+++DLGVSS Q D DRGFS+ Sbjct: 74 DKFKEENELGKINFIKSNFRNISEELNKRNILGVDGILYDLGVSSPQFDNADRGFSYNYD 133 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM S ++A DVVN + + L RI GEEK A IA I K RQ P +TT Sbjct: 134 APLDMRMDQSQSLTARDVVNDWSYEQLVRIFFRYGEEKFAKSIARRIEKVRQQTPIETTG 193 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L LI++ + + HPA ++FQA+RI VN+E+ L + L A L GG + V+ Sbjct: 194 QLVDLIKEAIPAKARRKGGHPAKKTFQAIRIAVNDELGALEESLEQALDLLNPGGRISVI 253 Query: 249 SFHSLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +F SLEDRLVK F + S + + ++ ++ IT+K +VP+++++ N R+ Sbjct: 254 TFQSLEDRLVKVMFKQKTSLPELPPGLPVIPDSQKVEYKLITRKPIVPSEDEITHNNRAH 313 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 314 SAKLRIIEK 322 >gi|328472688|gb|EGF43546.1| 16S rRNA m(4)C1402 methyltranserfase [Listeria monocytogenes 220] Length = 315 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 105/309 (33%), Positives = 174/309 (56%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H VLL + + +L P + +DAT G G+S ++ A D+D A+ Sbjct: 1 MFKHETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + DY ++ + +A F +++ + ++G VDG+++DLGVSS Q+D +RGFS+ + Sbjct: 61 AKIKLADYSDKVTFIKANFRDMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQD 120 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM ++A VVN+ + +DL RI GEEK + +IA I +RR+ P +TT Sbjct: 121 AALDMRMDQEQELTAKIVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTG 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I+ + ++ HP R+FQA+RI VN+E+ + L A LK GG + V+ Sbjct: 181 ELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLLKPGGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F + G + + + + F+ T+K +VP++E++ N R+R Sbjct: 241 TFHSLEDRITKHLFQEATKGPDLPPGLPVIPDEYKPDFKLATRKPIVPSEEELEQNNRAR 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRVIEK 309 >gi|258514333|ref|YP_003190555.1| S-adenosyl-methyltransferase MraW [Desulfotomaculum acetoxidans DSM 771] gi|257778038|gb|ACV61932.1| S-adenosyl-methyltransferase MraW [Desulfotomaculum acetoxidans DSM 771] Length = 311 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 120/306 (39%), Positives = 172/306 (56%), Gaps = 9/306 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H PV+L +VI LN PG + +D T G G+S + + +I LD+DP A++ E Sbjct: 5 HKPVMLAEVIDGLNIRPGGIYVDCTLGGAGHSSAIAQKLDGRGLLIGLDQDPEALAAASE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + Y FS++ + VDG+++DLGVSS Q+D RGFS+ PL Sbjct: 65 RLAVYGALVKTVGRNFSEIASVLSSLNIESVDGILYDLGVSSYQLDNPSRGFSYMHEAPL 124 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ SGI+A D+VN + + L I+ GEE+ ASRIA I++ R+ TT L Sbjct: 125 DMRMNPQSGITAGDLVNSLSQEKLAEIIQSYGEERWASRIAGFIIEERRHKNICTTGQLV 184 Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+K + ++ + HPA R+FQALRI VN E+E L Q LR K L+ GG + V++FH Sbjct: 185 QIIKKAIPAGARRDGPHPAKRTFQALRIAVNRELEILQQALRDGIKFLRTGGRICVITFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDRLVK+ F S + + + + IT K +VPT+ ++ N R+RSAK Sbjct: 245 SLEDRLVKEVFKSVAKGCICPPRLPVCLCGKQKELKIITGKPLVPTETELKDNPRARSAK 304 Query: 311 LRAGMR 316 LR R Sbjct: 305 LRIAER 310 >gi|56419646|ref|YP_146964.1| S-adenosyl-methyltransferase MraW [Geobacillus kaustophilus HTA426] gi|68565432|sp|Q5L0Y4|RSMH_GEOKA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|56379488|dbj|BAD75396.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426] Length = 310 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 111/309 (35%), Positives = 174/309 (56%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73 + H VLL++ + LN P + +D T G+GG+S + A D+D A+ Sbjct: 1 MFQHTTVLLKEAVDGLNIRPDGIYVDCTLGSGGHSEYLLSRLSEHGKLFAFDQDEAAIMH 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E + Y Q F LQ+ + GV DGV+FDLGVSS Q+D +RGFS+Q Sbjct: 61 ARERLARYGRQVQFVHRNFRFLQEELSALGVKSVDGVLFDLGVSSPQLDEPERGFSYQHD 120 Query: 131 GPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM+ ++A+++VN ++L RI GEE+ + ++A I + R++ P +TT Sbjct: 121 APLDMRMNRKQRLTAAEIVNCWPYEELVRIFFRYGEERFSKQVARKIEEVRRTRPIKTTG 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I+ + ++ + HPA R FQALRI VN+E+E + L A + L GG + V+ Sbjct: 181 ELVDVIKAAIPAPARRSGGHPAKRIFQALRIAVNDELEAFREALEQAIELLAPGGRVSVI 240 Query: 249 SFHSLEDRLVKKFFASRSGK-VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K+ F S + + + + V + ITKK +VP++E++ N R+R Sbjct: 241 TFHSLEDRICKETFKKASESPPLPPGLPVLPDDYRPVLKIITKKPIVPSEEELERNHRAR 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRIAEK 309 >gi|255527766|ref|ZP_05394619.1| S-adenosyl-methyltransferase MraW [Clostridium carboxidivorans P7] gi|296186678|ref|ZP_06855080.1| S-adenosyl-methyltransferase MraW [Clostridium carboxidivorans P7] gi|296187067|ref|ZP_06855466.1| S-adenosyl-methyltransferase MraW [Clostridium carboxidivorans P7] gi|255508553|gb|EET84940.1| S-adenosyl-methyltransferase MraW [Clostridium carboxidivorans P7] gi|296048354|gb|EFG87789.1| S-adenosyl-methyltransferase MraW [Clostridium carboxidivorans P7] gi|296048715|gb|EFG88147.1| S-adenosyl-methyltransferase MraW [Clostridium carboxidivorans P7] Length = 309 Score = 388 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 103/307 (33%), Positives = 162/307 (52%), Gaps = 9/307 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 HV VLLE+ I LN + +D T G GG+S K +I +D+D A+ Sbjct: 4 KHVSVLLEETIDALNVKEDGIYVDCTLGGGGHSYEILKRLSPKGRLIGIDQDTAALKAAG 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + ++ + + F + + + + + VDG++ DLGVSS Q+D +RGFS+ K P Sbjct: 64 DRLKQF-NNVTYVHNNFYNIDEILQELNIEKVDGIMMDLGVSSYQLDEAERGFSYMKDAP 122 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ S SA D+VN + + + +I+ GE+ A RIA IV+RR+ +TT +L Sbjct: 123 LDMRMNRDSSTSAYDIVNFYSEEQIFKIIKEYGEDNFAKRIAKFIVQRREKETIKTTLEL 182 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I++ + HPA R+FQA+RI VN E++ L + + + L GG + +++FH Sbjct: 183 VDIIRQAIPARFQKDGHPAKRTFQAIRIEVNRELQILDKAVEDSVNRLNKGGRIAIITFH 242 Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR +K F + + + I+KK + P+ E+ N RS+SAK Sbjct: 243 SLEDRKIKVKFKQLENPCTCPPDFPMCVCGKKPLVKLISKKPIEPSIEESENNSRSKSAK 302 Query: 311 LRAGMRT 317 LR R Sbjct: 303 LRVAERI 309 >gi|187934997|ref|YP_001886637.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum B str. Eklund 17B] gi|263446060|sp|B2TS30|RSMH_CLOBB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|187723150|gb|ACD24371.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum B str. Eklund 17B] Length = 310 Score = 388 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 107/307 (34%), Positives = 170/307 (55%), Gaps = 10/307 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 H+ VLL + + L+ + +D T G G+S + SN +I +D+D A+ + Sbjct: 4 KHISVLLNECLDALDIKDNGIYVDCTLGGAGHSSHILERLSNEGLLIGIDQDRDALKAAK 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E ++ + E + F + + + + VDG++ DLGVSS Q+D G RGFS+ K P Sbjct: 64 ERLKRF-ENVKYVHSNFYDIDNILQNLDIPKVDGILMDLGVSSYQLDEGARGFSYMKDAP 122 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ + SA ++VN+ + +L +I+ GEE+ A RI++ IV RR P +TT +L Sbjct: 123 LDMRMNRDNDFSAYEIVNEYSEDELYKIIRNYGEERFAKRISNCIVNRRSDKPIETTMEL 182 Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+ + + HPA R+FQA+RI VN+E++ L Q + LK GG + +++F Sbjct: 183 VDIIKAAIPAKARREGPHPAKRTFQAIRIEVNSELKILNQTIEDGVNRLKPGGRMAIITF 242 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK F + R + + I++K + PT+E+V N RSRSA Sbjct: 243 HSLEDRIVKLKFRELNDPCTCPREFPMCICGKKPSVRLISRKGIEPTKEEVEENPRSRSA 302 Query: 310 KLRAGMR 316 KLR + Sbjct: 303 KLRIIEK 309 >gi|167765841|ref|ZP_02437894.1| hypothetical protein CLOSS21_00332 [Clostridium sp. SS2/1] gi|167712558|gb|EDS23137.1| hypothetical protein CLOSS21_00332 [Clostridium sp. SS2/1] gi|291559197|emb|CBL37997.1| S-adenosyl-methyltransferase MraW [butyrate-producing bacterium SSC/2] Length = 312 Score = 388 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 97/307 (31%), Positives = 172/307 (56%), Gaps = 9/307 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H+ VLL++ I L+ P + +D T G GG++ C+ I +D+D A++ Sbjct: 4 KHISVLLDETIEELHIKPDGIYVDGTLGGGGHAYHVCQKLSEKGRYIGIDQDADAIAAST 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + +K++ ++ + + + + D G VDG++ DLGVSS Q+D +RGF++++ P Sbjct: 64 KRLEPFKDKVTIVRDNYVNMPKVLHDLGIEHVDGILLDLGVSSFQLDEKERGFTYREDVP 123 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM ++A D+VN+ + +L I+ GEEK A IA IV +R+ +P +TT L Sbjct: 124 LDMRMDQRQSLTARDIVNEYSEMELFHIIRDYGEEKFAKNIAKHIVNKRKESPIETTGQL 183 Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+ + + HPA ++FQA+RI N E++ L + + L GG L +++F Sbjct: 184 IEVIKGAIPMKVRAVGGHPAKKTFQAIRIECNRELDVLKDSIDAMIDLLNPGGRLCIITF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK+ F + + + + +T+K ++P +E++ +N+R++S+ Sbjct: 244 HSLEDRIVKRAFKKNENPCTCPPNFPVCVCGNVSKGKQLTRKPIIPGEEELEYNKRAKSS 303 Query: 310 KLRAGMR 316 KLR R Sbjct: 304 KLRVFER 310 >gi|91977868|ref|YP_570527.1| methyltransferase [Rhodopseudomonas palustris BisB5] gi|91684324|gb|ABE40626.1| methyltransferase [Rhodopseudomonas palustris BisB5] Length = 398 Score = 388 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 150/332 (45%), Positives = 199/332 (59%), Gaps = 8/332 (2%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAV 71 + + H+PVL + + LL P G V +D TFGAGGY+R + + VIA+DRD A+ Sbjct: 67 MTESGPRHIPVLGVEAVGLLAPRDGGVYVDGTFGAGGYTRLILEAADTRVIAIDRDRNAI 126 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQ 128 + G + ++ + +L + FS L D +G VDGVV D+GVSSMQ+D DRGFSF+ Sbjct: 127 ADGFDLVQSTSGRLTLVEDRFSNLADVCEAQGAESVDGVVMDIGVSSMQVDQADRGFSFR 186 Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM G +A+DVV A+ DL I+ I GEEK + +A AI+ R+ AP TT Sbjct: 187 LDGPLDMRMGNDGPTAADVVAHASEADLANIIYIFGEEKYSRHVARAIIAARKDAPIVTT 246 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 + L+ ++ V SK +IHPATR+FQALRIFVN E++EL Q L +AE+ LK GG L VV Sbjct: 247 KALADIVATVV-RSKPGQIHPATRTFQALRIFVNEELDELYQALSAAERVLKPGGRLAVV 305 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDR+VK F RS RH+ F +TK+ +V +VA N R+RS Sbjct: 306 SFHSLEDRIVKTFLGDRSRTGGGSRHLPELTQAAPSFTVLTKRPIVAGDAEVAANPRARS 365 Query: 309 AKLRAGMRTVERSIEDDSFVHLPRLPTLSQFR 340 AKLR RT + D LP PTL+ Sbjct: 366 AKLRGAERTAAPAHRPDD---LPGWPTLASVM 394 >gi|188587754|ref|YP_001921594.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum E3 str. Alaska E43] gi|251777689|ref|ZP_04820609.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|263446056|sp|B2V4W0|RSMH_CLOBA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|188498035|gb|ACD51171.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum E3 str. Alaska E43] gi|243082004|gb|EES47894.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 310 Score = 388 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 106/307 (34%), Positives = 170/307 (55%), Gaps = 10/307 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 H+ VLL + + L+ + +D T G G+S + SN +I +D+D A+ + Sbjct: 4 KHISVLLNECLDALDIKDNGIYVDCTLGGAGHSSHILERLSNEGLLIGIDQDRDALKAAK 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E ++ + E + F + + + + VDG++ DLGVSS Q+D G RGFS+ K P Sbjct: 64 ERLKRF-ENVKYVHSNFYDIDNILQNLDIPKVDGILMDLGVSSYQLDEGARGFSYMKDAP 122 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ + SA ++VN+ + +L +I+ GEE+ A RI++ IV RR P +TT +L Sbjct: 123 LDMRMNRDNDFSAYEIVNEYSEDELYKIIRNYGEERFAKRISNCIVNRRSDKPIETTMEL 182 Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+ + + HPA R+FQA+RI VN+E++ L Q + LK GG + +++F Sbjct: 183 VDIIKAAIPAKARREGPHPAKRTFQAIRIEVNSELKILNQTIEDGVNRLKPGGRMAIITF 242 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK F + R + + +++K + PT+E+V N RSRSA Sbjct: 243 HSLEDRIVKLKFRELNDPCTCPREFPMCICGKKPSVRLVSRKGIEPTKEEVEENPRSRSA 302 Query: 310 KLRAGMR 316 KLR + Sbjct: 303 KLRIIEK 309 >gi|262831532|sp|Q133W3|RSMH_RHOPS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 332 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 150/332 (45%), Positives = 199/332 (59%), Gaps = 8/332 (2%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAV 71 + + H+PVL + + LL P G V +D TFGAGGY+R + + VIA+DRD A+ Sbjct: 1 MTESGPRHIPVLGVEAVGLLAPRDGGVYVDGTFGAGGYTRLILEAADTRVIAIDRDRNAI 60 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQ 128 + G + ++ + +L + FS L D +G VDGVV D+GVSSMQ+D DRGFSF+ Sbjct: 61 ADGFDLVQSTSGRLTLVEDRFSNLADVCEAQGAESVDGVVMDIGVSSMQVDQADRGFSFR 120 Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM G +A+DVV A+ DL I+ I GEEK + +A AI+ R+ AP TT Sbjct: 121 LDGPLDMRMGNDGPTAADVVAHASEADLANIIYIFGEEKYSRHVARAIIAARKDAPIVTT 180 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 + L+ ++ V SK +IHPATR+FQALRIFVN E++EL Q L +AE+ LK GG L VV Sbjct: 181 KALADIVATVV-RSKPGQIHPATRTFQALRIFVNEELDELYQALSAAERVLKPGGRLAVV 239 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDR+VK F RS RH+ F +TK+ +V +VA N R+RS Sbjct: 240 SFHSLEDRIVKTFLGDRSRTGGGSRHLPELTQAAPSFTVLTKRPIVAGDAEVAANPRARS 299 Query: 309 AKLRAGMRTVERSIEDDSFVHLPRLPTLSQFR 340 AKLR RT + D LP PTL+ Sbjct: 300 AKLRGAERTAAPAHRPDD---LPGWPTLASVM 328 >gi|317057677|ref|YP_004106144.1| S-adenosyl-methyltransferase MraW [Ruminococcus albus 7] gi|315449946|gb|ADU23510.1| S-adenosyl-methyltransferase MraW [Ruminococcus albus 7] Length = 311 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 112/305 (36%), Positives = 168/305 (55%), Gaps = 8/305 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76 H+PVLL + I L+ P + D T G G+SR K +I++DRDP AV+ E Sbjct: 4 KHIPVLLNECIEGLDIKPDGIYCDGTAGGAGHSREIAKRLTTGRLISVDRDPEAVAVATE 63 Query: 77 TMRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + ++ + +S+L + + +G DG++ DLGVSS Q+D +RGFS+ PL Sbjct: 64 RLSGLPA--TVVRGNYSELDEIFARLGIEGADGILMDLGVSSYQLDNAERGFSYHTDAPL 121 Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 DMRMS G+SA DVVN + + L RI+ G+EK + IA IV+ R+ P +TT +L+ Sbjct: 122 DMRMSSEGLSARDVVNSYDERTLARIIFEYGDEKFSRNIAKKIVQVREDKPIETTLELAE 181 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 +I+ V +P ++FQA+RI VN E+E L+ L A L AGG L +++FHSL Sbjct: 182 VIKSAVPQKVRREKNPCKKTFQAIRIEVNAELEHLSIALDKAFDLLNAGGRLCIITFHSL 241 Query: 254 EDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 EDRLVK+ F S + + + IT+K + P+ + N+R+ SAKLR Sbjct: 242 EDRLVKQRFKSFCQGCICPPDFPVCVCGRTPRGKLITRKPIEPSDSENEENKRAHSAKLR 301 Query: 313 AGMRT 317 + Sbjct: 302 IIEKI 306 >gi|254831717|ref|ZP_05236372.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes 10403S] Length = 312 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 103/311 (33%), Positives = 175/311 (56%), Gaps = 9/311 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H VLL + + +L P + +DAT G G+S ++ A D+D A+ Sbjct: 1 MFKHETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + DY ++ + +A F +++ + ++G VDG+++DLGVSS Q+D +RGFS+ + Sbjct: 61 AKIKLADYSDKVTFIKANFRDMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQD 120 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM ++A VVN+ + +DL RI GEEK + +IA I + R+ P +TT Sbjct: 121 AALDMRMDQEQELTAKTVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERHREVKPIETTG 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I+ + ++ HP R+FQA+RI VN+E+ + L A +K GG + V+ Sbjct: 181 ELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLIKPGGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K+ F + G + + + + F+ T+K +VP++E++ N R+R Sbjct: 241 TFHSLEDRITKQLFQEATKGPDLPPGLPVIPDEYKPDFKLATRKPIVPSEEELEQNNRAR 300 Query: 308 SAKLRAGMRTV 318 SAKLR + + Sbjct: 301 SAKLRVIEKII 311 >gi|254689633|ref|ZP_05152887.1| S-adenosyl-methyltransferase MraW [Brucella abortus bv. 6 str. 870] gi|256257883|ref|ZP_05463419.1| S-adenosyl-methyltransferase MraW [Brucella abortus bv. 9 str. C68] gi|260755162|ref|ZP_05867510.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella abortus bv. 6 str. 870] gi|260884175|ref|ZP_05895789.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella abortus bv. 9 str. C68] gi|297248720|ref|ZP_06932438.1| methylase MraW [Brucella abortus bv. 5 str. B3196] gi|260675270|gb|EEX62091.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella abortus bv. 6 str. 870] gi|260873703|gb|EEX80772.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella abortus bv. 9 str. C68] gi|297175889|gb|EFH35236.1| methylase MraW [Brucella abortus bv. 5 str. B3196] Length = 346 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 167/326 (51%), Positives = 217/326 (66%), Gaps = 6/326 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 HVPVL+ +VI L PAPG VI+D TFGAGGY+R + G++VIA+DRDP A+ G+ + Sbjct: 18 HVPVLIAEVIDALKPAPGAVIVDGTFGAGGYTRRILETGADVIAIDRDPTAIEAGRAMEK 77 Query: 80 DYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++ + +L ++ FS L + V VDGVV D+GVSSMQID +RGFSFQK GPLD Sbjct: 78 EFPGRLNLVESRFSALDEAVARMSGAGKKVDGVVLDIGVSSMQIDEAERGFSFQKDGPLD 137 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRMS G SA+D VN+ DL RI LGEE+ A RIA I KRR + PF T DL++ Sbjct: 138 MRMSSRGPSAADAVNRLKTGDLARIFNFLGEERHAGRIARMIEKRRAAKPFTRTLDLANA 197 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 I+ V + +RIHPATR FQALR++VN+E+ ELA+ L +AE+ LK GG L+VV+FHSLE Sbjct: 198 IETLVGRNPKDRIHPATRVFQALRVYVNDELGELARALLAAERILKPGGRLVVVTFHSLE 257 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 DR+VK+FFA R+G RHM ++ F K V PT E+ N R+RSAKLRAG Sbjct: 258 DRMVKRFFADRAGGSAGSRHMPETHMRLPSFTPAVKGPVGPTPEEEERNPRARSAKLRAG 317 Query: 315 MRTVERSIEDD-SFVHLPRLPTLSQF 339 +RT +EDD S LP+LP ++ Sbjct: 318 IRTENPPLEDDLSLFGLPKLPETNEL 343 >gi|194014300|ref|ZP_03052917.1| S-adenosyl-methyltransferase MraW [Bacillus pumilus ATCC 7061] gi|194013326|gb|EDW22891.1| S-adenosyl-methyltransferase MraW [Bacillus pumilus ATCC 7061] Length = 310 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 108/309 (34%), Positives = 167/309 (54%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSC 73 + H VLL++ + LN +D T G G+S S +I D+D A+ Sbjct: 1 MFQHETVLLKETVDGLNVKEDGTYVDCTLGGAGHSSYLLSQLSEKGTLIGFDQDDAALDH 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E + D K ++ F L++ + ++G VDGV+FDLGVSS Q+D +RGFS+ Sbjct: 61 AREKLADSKANILFIKSNFRYLKERLNEQGITSVDGVIFDLGVSSPQLDTPERGFSYHHD 120 Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM S +SA VVN+ +DL RI GEEK + +IA I + R+ AP +TT Sbjct: 121 APLDMRMDQSAALSAKKVVNEWPFEDLVRIFYKYGEEKFSKQIARKIEEARKKAPIETTG 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I++ + ++ HPA R FQA+RI VN+E++ + L A + L G + V+ Sbjct: 181 ELVDIIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALEQAIELLNPKGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F S + + + IT+K +V +++++ N R+R Sbjct: 241 TFHSLEDRICKSTFREMSSLPELPHGLPVIPEGLEPKLKLITRKPIVASEQELEHNNRAR 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRIAEK 309 >gi|261419308|ref|YP_003252990.1| S-adenosyl-methyltransferase MraW [Geobacillus sp. Y412MC61] gi|297530722|ref|YP_003671997.1| S-adenosyl-methyltransferase MraW [Geobacillus sp. C56-T3] gi|319766124|ref|YP_004131625.1| S-adenosyl-methyltransferase MraW [Geobacillus sp. Y412MC52] gi|261375765|gb|ACX78508.1| S-adenosyl-methyltransferase MraW [Geobacillus sp. Y412MC61] gi|297253974|gb|ADI27420.1| S-adenosyl-methyltransferase MraW [Geobacillus sp. C56-T3] gi|317110990|gb|ADU93482.1| S-adenosyl-methyltransferase MraW [Geobacillus sp. Y412MC52] Length = 310 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 113/309 (36%), Positives = 176/309 (56%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H VLL++ + LN P + +D T G GG+S + A D+D A+ Sbjct: 1 MFQHTTVLLKEAVDGLNIRPDGIYVDCTLGGGGHSEYLLSRLSARGKLFAFDQDEAAIMH 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E + Y Q F LQ+ + GV DGV+FDLGVSS Q+D +RGFS+Q Sbjct: 61 ARERLARYGRQVQFVHRNFRFLQEELSALGVKSVDGVLFDLGVSSPQLDEPERGFSYQHD 120 Query: 131 GPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM ++A+++VN+ ++L RI GEEK + ++A I + R++ P +TT Sbjct: 121 APLDMRMDRKQRLTAAEIVNRWPYEELVRIFFRYGEEKFSKQVARKIEEVRRTRPIKTTG 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I++ + ++ + HPA R FQALRI VN+E+E + L A + L +GG + V+ Sbjct: 181 ELVDVIKEAIPAPARRSGGHPAKRIFQALRIAVNDELEAFREALEQAIELLASGGRVSVI 240 Query: 249 SFHSLEDRLVKKFFASRSGK-VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K+ F S + + + + V + ITKK +VP++E++ NRR+R Sbjct: 241 TFHSLEDRICKETFKKASESPPLPPGLPVLPDDYRPVLKIITKKPIVPSEEELERNRRAR 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRIAEK 309 >gi|258511253|ref|YP_003184687.1| S-adenosyl-methyltransferase MraW [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477979|gb|ACV58298.1| S-adenosyl-methyltransferase MraW [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 316 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 115/306 (37%), Positives = 185/306 (60%), Gaps = 9/306 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VLLE+ + L P PG V +DAT G GG++ + VIA D+D A++ + Sbjct: 5 HETVLLEEAVEALRPQPGGVYVDATLGGGGHTARLLERSVPDGAVIAFDQDETAIAHAEP 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 R Y + +L +A F+++++ + GV DGV+FDLGVSS Q D +RGFS+ GPL Sbjct: 65 LKRQYPGRLTLVKANFAEMEERLRALGVTAVDGVLFDLGVSSPQFDLPERGFSYWHEGPL 124 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM ++A ++VN+ + ++L RI+ GEE+ A+ IA AI + R P +TT +L+ Sbjct: 125 DMRMDRHQPLTAREIVNEWDEQELARIIREYGEERFATAIARAITRARSKKPIETTTELA 184 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +++ + + + + HPA R+FQA+RI VN+E+ L +G+ +A +AL+ GG L V++FH Sbjct: 185 EIVKSAIPAAARRSGPHPARRTFQAIRIAVNDELGALERGMEAAFRALRPGGRLSVITFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR VK+ F + + + + + + +++K V P+ E++ N R+RSAK Sbjct: 245 SLEDRAVKRLFQTWAQGCICPPEFPVCQCGRKPLGRMVSRKPVTPSSEELERNPRARSAK 304 Query: 311 LRAGMR 316 LRA + Sbjct: 305 LRAFEK 310 >gi|90962030|ref|YP_535946.1| S-adenosyl-methyltransferase MraW [Lactobacillus salivarius UCC118] gi|122448863|sp|Q1WT95|RSMH_LACS1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|90821224|gb|ABD99863.1| S-adenosyl-methyltransferase [Lactobacillus salivarius UCC118] gi|300214731|gb|ADJ79147.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Lactobacillus salivarius CECT 5713] Length = 314 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 108/309 (34%), Positives = 167/309 (54%), Gaps = 11/309 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H+ VLL + + LN P +D T G GG+S + + D+D A++ + Sbjct: 5 KHITVLLNEAVDGLNIKPDGTYVDCTLGGGGHSGLILSKLSENGKLYSFDQDITAINFNK 64 Query: 76 ETMRDYKE--QFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + E + + ++ F + + + + GVDG+++DLGVSS Q D DRGFS+ Sbjct: 65 DKFEEENELGKINFIKSNFRNISEELNKRNILGVDGILYDLGVSSPQFDNADRGFSYNYD 124 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM S ++A DVVN + + L RI GEEK A IA I K RQ P +TT Sbjct: 125 APLDMRMDQSQSLTARDVVNDWSYEQLVRIFFRYGEEKFAKSIARRIEKVRQQTPIETTG 184 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L LI++ + + HPA ++FQA+RI VN+E+ L + L A L GG + V+ Sbjct: 185 QLVDLIKEAIPAKARRKGGHPAKKTFQAIRIAVNDELGALEESLEQALDLLNPGGRISVI 244 Query: 249 SFHSLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +F SLEDRLVK F + S + + ++ ++ IT+K +VP+++++ N R+ Sbjct: 245 TFQSLEDRLVKVMFKQKTSLPELPPGLPVIPDSQKVEYKLITRKPIVPSEDEITHNNRAH 304 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 305 SAKLRIIEK 313 >gi|291166340|gb|EFE28386.1| S-adenosyl-methyltransferase MraW [Filifactor alocis ATCC 35896] Length = 310 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 113/305 (37%), Positives = 174/305 (57%), Gaps = 8/305 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77 H PV+L + I +LN P + +D T G G+S K +IA D+D A+ + Sbjct: 5 HKPVMLNECIDMLNIVPSGIYVDGTLGGAGHSLEIVKRLDSGKLIAFDQDIEAIKNAKIK 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++ Y+++ L F ++ + D + +G++ DLGVSS Q+D +RGFS++ PLD Sbjct: 65 LKSYEDKVILIHDNFRNIKKSLEDIDIFRINGLLLDLGVSSYQLDSPERGFSYRYDAPLD 124 Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM+ S ISA +VN + +DL RI+ GEEK ASRIA IV+ R P TT +L Sbjct: 125 MRMNQSSQISAKYIVNTYSEEDLKRIIRDYGEEKWASRIAQFIVEERMKKPIDTTGELVQ 184 Query: 194 LIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ + + HPA R+FQA+RI N+E++ + L SA + L GG++ V++FHS Sbjct: 185 IIKAAIPKKAREEEQHPAKRTFQAIRIETNHELDVIHDVLESAVELLLPGGVISVITFHS 244 Query: 253 LEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK FF S + + H A + +K +VP++E++ N RSRSAK+ Sbjct: 245 LEDRIVKNFFRDESTGCICSPEIPVCVCNHQARLRLAHRKPLVPSEEELRENPRSRSAKV 304 Query: 312 RAGMR 316 R ++ Sbjct: 305 RGAIK 309 >gi|260437306|ref|ZP_05791122.1| S-adenosyl-methyltransferase MraW [Butyrivibrio crossotus DSM 2876] gi|292810218|gb|EFF69423.1| S-adenosyl-methyltransferase MraW [Butyrivibrio crossotus DSM 2876] Length = 313 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 102/309 (33%), Positives = 166/309 (53%), Gaps = 10/309 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H VLL + I LN P + +D T G G+S C+ +I +D+D A+ Sbjct: 5 HKSVLLNECIENLNIKPDGIYVDGTLGGAGHSYHICERLSKKGRLIGIDQDEDAIRAATT 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK-SGP 132 + +K++ ++ + +S +++ + G VDG++ D+GVSS Q+D +RGF++++ P Sbjct: 65 RLEPFKDRVTIVKDNYSNIKNVLVSLGIDKVDGILLDIGVSSYQLDNAERGFTYKEEDAP 124 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM SGI+A DVVN + +L R++ GEE+ A IA I R + TT L Sbjct: 125 LDMRMDRQSGITAQDVVNDYSEMELFRVIRDYGEEQFAKNIAKHICIERNKSRITTTGRL 184 Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 + +I+ + + N HPA ++FQA+RI VN E+ L + + + L G L +++F Sbjct: 185 TEIIKAAIPMKFRVNGGHPAKKTFQAIRIEVNRELYVLEESIDTMIDLLNDKGRLCIITF 244 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK F + + IT+K +VPT E++ N+R++S+ Sbjct: 245 HSLEDRIVKNKFRDNVNTCTCPPDFPVCVCGNRPKGVIITRKPIVPTDEEIEINKRAKSS 304 Query: 310 KLRAGMRTV 318 KLR R + Sbjct: 305 KLRVFERVI 313 >gi|171778125|ref|ZP_02919382.1| hypothetical protein STRINF_00217 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171283107|gb|EDT48531.1| hypothetical protein STRINF_00217 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 339 Score = 387 bits (996), Expect = e-106, Method: Composition-based stats. Identities = 109/323 (33%), Positives = 169/323 (52%), Gaps = 15/323 (4%) Query: 6 CKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVI 62 K M+ H H+ VLL + + +L+ P + +DAT G G+S ++ Sbjct: 21 MKGMTKDFH-----HITVLLHETVDMLDIEPDGIYVDATLGGAGHSEYLLSKLGPNGHLY 75 Query: 63 ALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQ 117 A D+D A+ Q ++DY K Q + + F L + GV DG+++DLGVSS Q Sbjct: 76 AFDQDQTAIDNAQIRLKDYIEKGQVTFIKDNFRNLASNLAMHGVTEIDGILYDLGVSSPQ 135 Query: 118 IDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 +D +RGFS++K PLDMRM+ ++A DVVN + DL RI GE+K + +IA I Sbjct: 136 LDERERGFSYKKDAPLDMRMNREQDLTAYDVVNTYDYYDLVRIFYKYGEDKFSKQIARKI 195 Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 + RQ P +TT +L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A Sbjct: 196 EQARQEKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQA 255 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295 L G + V++FHSLEDRL K+ F S + + + +K ++P Sbjct: 256 IDLLAVDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDMQPKLTLVNRKPILP 315 Query: 296 TQEDVAFNRRSRSAKLRAGMRTV 318 QE++ N RS SAKLR + Sbjct: 316 RQEELEANNRSHSAKLRVARKVR 338 >gi|295696471|ref|YP_003589709.1| S-adenosyl-methyltransferase MraW [Bacillus tusciae DSM 2912] gi|295412073|gb|ADG06565.1| S-adenosyl-methyltransferase MraW [Bacillus tusciae DSM 2912] Length = 315 Score = 387 bits (996), Expect = e-106, Method: Composition-based stats. Identities = 113/311 (36%), Positives = 190/311 (61%), Gaps = 10/311 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H PVLL +V+A+L P PG + +D T G GG++++ + +I +D+D A++ +E Sbjct: 5 HEPVLLHEVLAILQPRPGGLYVDGTLGGGGHAQAILEAAAPDGRLIGIDQDDEALTASKE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVP----DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + Y + + + F ++++ + +GVDG++ D+G+SS Q+D +RGFS++ P Sbjct: 65 RLTPYGGRVTTVKGNFRRIKEILWGLGVIEGVDGILLDVGLSSPQVDEAERGFSYRSDAP 124 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM SG ++A D+VN +L R++ GEE+ A+RIA AIV+RRQ +TT +L Sbjct: 125 LDMRMDLSGTLTARDIVNSWPEGELARVVRDYGEERWAARIAKAIVRRRQRQAIETTGEL 184 Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 + L+++ + + + + HPA R+FQALRI VN+E+ L +G++ A + L+ GG L V++F Sbjct: 185 AELVKEAIPAAARRHGPHPARRTFQALRIAVNDELGALEEGVKGALEVLRPGGRLAVIAF 244 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK+ A + + + + + I ++ +VP E++A N R+RSA Sbjct: 245 HSLEDRIVKRILAEEARSCICPPEAPVCTCGRRPRVRLIGRRPIVPGPEELARNPRARSA 304 Query: 310 KLRAGMRTVER 320 KLR R + Sbjct: 305 KLRGAERLAQE 315 >gi|295109202|emb|CBL23155.1| S-adenosyl-methyltransferase MraW [Ruminococcus obeum A2-162] Length = 314 Score = 387 bits (996), Expect = e-106, Method: Composition-based stats. Identities = 102/307 (33%), Positives = 169/307 (55%), Gaps = 9/307 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H VLL++ I L+ P + +D T G G++ C+ I +D+D A+ Sbjct: 4 KHKSVLLDETIEGLSIRPDGIYVDGTLGGAGHASEVCQRLSAKGRFIGIDQDQDAIIAAS 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + Y+++ ++ ++ + + + + + G V+G+V DLGVSS Q+D +RGF+++ P Sbjct: 64 ERLAAYEDRVTIIRSNYCYMVNELKNLGIQKVNGIVLDLGVSSYQLDNEERGFTYRVDAP 123 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM +A+D+VN + K+L RI+ GE+K A IA IV R AP QTT +L Sbjct: 124 LDMRMDQRQSRTAADIVNGYDEKELYRIIRDYGEDKFAKNIAKHIVAARAKAPIQTTGEL 183 Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 + +I++++ + HPA R+FQA+RI +N E++ L + L L GG + +++F Sbjct: 184 TEIIRQSIPMKIQATGGHPAKRTFQAIRIELNRELDVLRESLDGMIDLLDDGGRICIITF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK F + + + IT+K ++P+ ++ N RS+SA Sbjct: 244 HSLEDRIVKTIFRKNENPCTCPPDFPVCVCGKESKGKVITRKPILPSAVEMEENPRSKSA 303 Query: 310 KLRAGMR 316 KLR R Sbjct: 304 KLRIFER 310 >gi|310642996|ref|YP_003947754.1| ribosomal RNA small subunit methyltransferase h [Paenibacillus polymyxa SC2] gi|309247946|gb|ADO57513.1| Ribosomal RNA small subunit methyltransferase H [Paenibacillus polymyxa SC2] Length = 316 Score = 387 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 111/315 (35%), Positives = 172/315 (54%), Gaps = 15/315 (4%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSC 73 + H+ VL E+ LN + +D T G G+S +IA D+D +A++ Sbjct: 1 MFHHITVLKEEATQALNIRQDGIYVDCTLGGAGHSSVIASQLGPEGRLIAFDQDDWALNN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---------VDGVVFDLGVSSMQIDCGDRG 124 +E + Y+ + SL ++ F LQD + + G V G++FDLGVSS Q D G+RG Sbjct: 61 AREKLSAYEGKISLVKSNFRHLQDKLAELGLPEKDGVPQVQGILFDLGVSSPQFDEGERG 120 Query: 125 FSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 FS+ PLDMRM S ++A ++VN+ ++ RIL GEEK + RIA +V+RR + Sbjct: 121 FSYNHDAPLDMRMDQSSSLTAYEIVNEWPEAEIARILFQYGEEKFSRRIAKIMVERRMNK 180 Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 P TT +L +I++ + + + HPA RSFQALRI VN+E+ L L A + L G Sbjct: 181 PIHTTGELVDIIKEGIPAAARRTGGHPAKRSFQALRIAVNDELGALEDTLHQAVRCLAPG 240 Query: 243 GLLIVVSFHSLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 G + V++FHSLEDR+ K F + + I + + + +K +V +++++ Sbjct: 241 GRISVITFHSLEDRICKHIFKEYLAKSIYPSDLPILDDKMVGDLKLVNRKPIVASEQELE 300 Query: 302 FNRRSRSAKLRAGMR 316 N RSRSAKLR + Sbjct: 301 LNPRSRSAKLRVAEK 315 >gi|163843695|ref|YP_001628099.1| S-adenosyl-methyltransferase MraW [Brucella suis ATCC 23445] gi|263446883|sp|B0CHM8|RSMH_BRUSI RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|163674418|gb|ABY38529.1| S-adenosyl-methyltransferase MraW [Brucella suis ATCC 23445] Length = 346 Score = 387 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 167/326 (51%), Positives = 217/326 (66%), Gaps = 6/326 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 HVPVL+ +VI L PAPG VI+D TFGAGGY+R + G++VIA+DRDP A+ G+ + Sbjct: 18 HVPVLIAEVIDALKPAPGAVIVDGTFGAGGYTRRILETGADVIAIDRDPTAIEAGRAMEK 77 Query: 80 DYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++ + +L ++ FS L + V VDGVV D+GVSSMQID +RGFSFQK GPLD Sbjct: 78 EFPGRLNLVESRFSALDEAVARMSGAGKKVDGVVLDIGVSSMQIDEAERGFSFQKDGPLD 137 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRMS G SA+D VN+ DL RI LGEE+ A RIA I KRR + PF T DL++ Sbjct: 138 MRMSSGGPSAADAVNRLKTGDLARIFNFLGEERHAGRIARMIEKRRAAKPFTRTLDLANA 197 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 I+ V + +RIHPATR FQALR++VN+E+ ELA+ L +AE+ LK GG L+VV+FHSLE Sbjct: 198 IETLVGRNPKDRIHPATRVFQALRVYVNDELGELARALLAAERILKPGGRLVVVTFHSLE 257 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 DR+VK+FFA R+G RHM ++ F K V PT E+ N R+RSAKLRAG Sbjct: 258 DRMVKRFFADRAGGSAGSRHMPETHMRLPSFTPAVKGAVGPTPEEEERNPRARSAKLRAG 317 Query: 315 MRTVERSIEDD-SFVHLPRLPTLSQF 339 +RT +EDD S LP+LP ++ Sbjct: 318 IRTENPPLEDDLSLFGLPKLPETNEL 343 >gi|291557117|emb|CBL34234.1| S-adenosyl-methyltransferase MraW [Eubacterium siraeum V10Sc8a] Length = 308 Score = 387 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 118/303 (38%), Positives = 176/303 (58%), Gaps = 8/303 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77 H+PVLL + I L+ P + +D T G G+S K +I DRDP AV +E Sbjct: 7 HIPVLLSETIESLDIKPDGIYVDCTTGFAGHSSEIAKRLTTGRLIGFDRDPDAVKAAEEK 66 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++DY +L FS + + + GV DGV+ DLGVSS Q+D +RGFS+ + PLD Sbjct: 67 LKDYPH--TLINRKFSTFDESLDEIGVGKVDGVLMDLGVSSYQLDTAERGFSYHEDAPLD 124 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRMS SG+SA DVVN+ + + L +IL GEEK A I I+K R++AP +TT +L+ + Sbjct: 125 MRMSKSGLSAYDVVNEYSKEQLEKILFEYGEEKFAHGIVSGILKARETAPIKTTLELAEI 184 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 +++ V +P ++FQA+RI VN E++EL +G+ A + LKAGG L +++FHS+E Sbjct: 185 VKRNVPLKVRKEKNPCKKTFQAIRIEVNGELDELKKGMSEAFERLKAGGRLAIITFHSIE 244 Query: 255 DRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 DR+VK F + +++ +K V ++E++A N RSRSAKLR Sbjct: 245 DRIVKNTFREYCTGCTCPPDFPVCVCGKKPRGRTVYRKPVTASEEELAVNNRSRSAKLRV 304 Query: 314 GMR 316 + Sbjct: 305 IEK 307 >gi|47097273|ref|ZP_00234832.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes str. 1/2a F6854] gi|254899261|ref|ZP_05259185.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes J0161] gi|254912599|ref|ZP_05262611.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Listeria monocytogenes J2818] gi|254936926|ref|ZP_05268623.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes F6900] gi|47014346|gb|EAL05320.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes str. 1/2a F6854] gi|258609526|gb|EEW22134.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes F6900] gi|293590591|gb|EFF98925.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Listeria monocytogenes J2818] Length = 312 Score = 387 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 104/311 (33%), Positives = 176/311 (56%), Gaps = 9/311 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H VLL + + +L P + +DAT G G+S ++ A D+D A+ Sbjct: 1 MFKHETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + DY ++ + +A F +++ + ++G VDG+++DLGVSS Q+D +RGFS+ + Sbjct: 61 AKIKLADYSDKVTFIKANFRDMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQD 120 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM ++A VVN+ + +DL RI GEEK + +IA I +RR+ P +TT Sbjct: 121 AALDMRMDQEQELTAKTVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTG 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I+ + ++ HP R+FQA+RI VN+E+ + L A +K GG + V+ Sbjct: 181 ELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLIKPGGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K+ F + G + + + + F+ T+K +VP++E++ N R+R Sbjct: 241 TFHSLEDRITKQLFQEATKGPDLPPGLPVIPDEYKPDFKLATRKPIVPSEEELEQNNRAR 300 Query: 308 SAKLRAGMRTV 318 SAKLR + + Sbjct: 301 SAKLRVIKKII 311 >gi|325264796|ref|ZP_08131525.1| S-adenosyl-methyltransferase MraW [Clostridium sp. D5] gi|324030088|gb|EGB91374.1| S-adenosyl-methyltransferase MraW [Clostridium sp. D5] Length = 315 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 104/306 (33%), Positives = 171/306 (55%), Gaps = 9/306 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H VLLE+ + L P + +DAT G GG++ C + I +D+D A+ Sbjct: 9 HTSVLLEETVDGLAVKPDGIYVDATLGGGGHAFEVCSKLSSKGSFIGIDQDAAAIEAASA 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + D+ E+ ++ ++ + ++ + + G VDG+V DLGVSS Q+D +RGFS++ PL Sbjct: 69 RLLDFGERVTIIRSNYCDMKPRLHEIGIDKVDGIVLDLGVSSYQLDTAERGFSYRTDAPL 128 Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + +A D+VN + DL R++ GE++ A IA IV R P +TT L+ Sbjct: 129 DMRMDQRQMMTAKDIVNDYSESDLYRVIRDYGEDRFAKNIAKHIVIARGKGPIETTGQLN 188 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+K + + HP+ R++QA+RI +N E++ L + L + LK GG + +++FH Sbjct: 189 EIIRKAIPMKIQKTSGHPSKRTYQAIRIELNRELDVLRETLDDMIELLKPGGRICIITFH 248 Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK F H + + + + IT+K ++P++E++ N RS+SAK Sbjct: 249 SLEDRIVKSAFRKNENPCTCPSHFPVCVCGNVSKGKVITRKPILPSEEELEENSRSKSAK 308 Query: 311 LRAGMR 316 LR R Sbjct: 309 LRIFER 314 >gi|225574511|ref|ZP_03783121.1| hypothetical protein RUMHYD_02588 [Blautia hydrogenotrophica DSM 10507] gi|225038298|gb|EEG48544.1| hypothetical protein RUMHYD_02588 [Blautia hydrogenotrophica DSM 10507] Length = 336 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 101/314 (32%), Positives = 169/314 (53%), Gaps = 9/314 (2%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70 ++ H VLLE+ I L P + +D T G G++ CK I +D+D A Sbjct: 21 NNMEFKHKSVLLEETIDGLRVKPDGIYVDGTLGGAGHAVEVCKKLSAKGRFIGIDQDQDA 80 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSF 127 + E +RD+ ++ ++ ++ + + ++G VDG++ DLGVSS Q+D +RGF++ Sbjct: 81 IIAANERLRDFGDRITIIRSNYCYAVKELRERGIQQVDGILLDLGVSSYQLDNPERGFTY 140 Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + PLDMRM + +A D+VN ++L RI+ GE+K A IA IV R P + Sbjct: 141 RVDAPLDMRMDQRASQTAGDIVNGYEERELYRIIRDYGEDKFAKNIAKHIVMERARKPIE 200 Query: 187 TTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT +L+ +I++ + + HPA R+FQA+RI +N+E++ L L L G + Sbjct: 201 TTGELTEVIRRAIPMKMQAAGGHPAKRTFQAIRIELNHELDVLRDSLDEMVDILSDRGRI 260 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 +++FHSLEDR+VK F + + + IT+K ++P+++++ N Sbjct: 261 CIITFHSLEDRIVKTIFRKNENPCTCPSNFPVCVCGKKSKGKVITRKPILPSEDEMEENP 320 Query: 305 RSRSAKLRAGMRTV 318 R++SAKLR RT Sbjct: 321 RAKSAKLRIFERTR 334 >gi|237815839|ref|ZP_04594836.1| S-adenosyl-methyltransferase MraW [Brucella abortus str. 2308 A] gi|237789137|gb|EEP63348.1| S-adenosyl-methyltransferase MraW [Brucella abortus str. 2308 A] gi|326409463|gb|ADZ66528.1| Bacterial methyltransferase [Brucella melitensis M28] gi|326539169|gb|ADZ87384.1| S-adenosyl-methyltransferase MraW [Brucella melitensis M5-90] Length = 347 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 167/326 (51%), Positives = 217/326 (66%), Gaps = 6/326 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 HVPVL+ +VI L PAPG VI+D TFGAGGY+R + G++VIA+DRDP A+ G+ + Sbjct: 19 HVPVLIAEVIDALKPAPGAVIVDGTFGAGGYTRRILETGADVIAIDRDPTAIEAGRAMEK 78 Query: 80 DYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++ + +L ++ FS L + V VDGVV D+GVSSMQID +RGFSFQK GPLD Sbjct: 79 EFPGRLNLVESRFSALDEAVARMSGAGKKVDGVVLDIGVSSMQIDEAERGFSFQKDGPLD 138 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRMS G SA+D VN+ DL RI LGEE+ A RIA I KRR + PF T DL++ Sbjct: 139 MRMSSRGPSAADAVNRLKTGDLARIFNFLGEERHAGRIARMIEKRRAAKPFTRTLDLANA 198 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 I+ V + +RIHPATR FQALR++VN+E+ ELA+ L +AE+ LK GG L+VV+FHSLE Sbjct: 199 IETLVGRNPKDRIHPATRVFQALRVYVNDELGELARALLAAERILKPGGRLVVVTFHSLE 258 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 DR+VK+FFA R+G RHM ++ F K V PT E+ N R+RSAKLRAG Sbjct: 259 DRMVKRFFADRAGGSAGSRHMPETHMRLPSFTPAVKGAVGPTPEEEERNPRARSAKLRAG 318 Query: 315 MRTVERSIEDD-SFVHLPRLPTLSQF 339 +RT +EDD S LP+LP ++ Sbjct: 319 IRTENPPLEDDLSLFGLPKLPETNEL 344 >gi|17986854|ref|NP_539488.1| S-adenosyl-methyltransferase MraW [Brucella melitensis bv. 1 str. 16M] gi|23502310|ref|NP_698437.1| S-adenosyl-methyltransferase MraW [Brucella suis 1330] gi|62290332|ref|YP_222125.1| S-adenosyl-methyltransferase MraW [Brucella abortus bv. 1 str. 9-941] gi|82700256|ref|YP_414830.1| S-adenosyl-methyltransferase MraW [Brucella melitensis biovar Abortus 2308] gi|161619387|ref|YP_001593274.1| S-adenosyl-methyltransferase MraW [Brucella canis ATCC 23365] gi|189024565|ref|YP_001935333.1| S-adenosyl-methyltransferase MraW [Brucella abortus S19] gi|225852921|ref|YP_002733154.1| S-adenosyl-methyltransferase MraW [Brucella melitensis ATCC 23457] gi|254694123|ref|ZP_05155951.1| S-adenosyl-methyltransferase MraW [Brucella abortus bv. 3 str. Tulya] gi|254697775|ref|ZP_05159603.1| S-adenosyl-methyltransferase MraW [Brucella abortus bv. 2 str. 86/8/59] gi|254702160|ref|ZP_05163988.1| S-adenosyl-methyltransferase MraW [Brucella suis bv. 5 str. 513] gi|254704697|ref|ZP_05166525.1| S-adenosyl-methyltransferase MraW [Brucella suis bv. 3 str. 686] gi|254708111|ref|ZP_05169939.1| S-adenosyl-methyltransferase MraW [Brucella pinnipedialis M163/99/10] gi|254710480|ref|ZP_05172291.1| S-adenosyl-methyltransferase MraW [Brucella pinnipedialis B2/94] gi|254730664|ref|ZP_05189242.1| S-adenosyl-methyltransferase MraW [Brucella abortus bv. 4 str. 292] gi|256031974|ref|ZP_05445588.1| S-adenosyl-methyltransferase MraW [Brucella pinnipedialis M292/94/1] gi|256045069|ref|ZP_05447970.1| S-adenosyl-methyltransferase MraW [Brucella melitensis bv. 1 str. Rev.1] gi|256160173|ref|ZP_05457867.1| S-adenosyl-methyltransferase MraW [Brucella ceti M490/95/1] gi|256255379|ref|ZP_05460915.1| S-adenosyl-methyltransferase MraW [Brucella ceti B1/94] gi|256263598|ref|ZP_05466130.1| bacterial methyltransferase [Brucella melitensis bv. 2 str. 63/9] gi|256369855|ref|YP_003107366.1| S-adenosyl-methyltransferase [Brucella microti CCM 4915] gi|260169111|ref|ZP_05755922.1| S-adenosyl-methyltransferase MraW [Brucella sp. F5/99] gi|260546874|ref|ZP_05822613.1| bacterial methyltransferase [Brucella abortus NCTC 8038] gi|260565332|ref|ZP_05835816.1| bacterial methyltransferase [Brucella melitensis bv. 1 str. 16M] gi|260566056|ref|ZP_05836526.1| bacterial methyltransferase [Brucella suis bv. 4 str. 40] gi|260758381|ref|ZP_05870729.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella abortus bv. 4 str. 292] gi|260762207|ref|ZP_05874550.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella abortus bv. 2 str. 86/8/59] gi|261214424|ref|ZP_05928705.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella abortus bv. 3 str. Tulya] gi|261222582|ref|ZP_05936863.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella ceti B1/94] gi|261315615|ref|ZP_05954812.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella pinnipedialis M163/99/10] gi|261318052|ref|ZP_05957249.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella pinnipedialis B2/94] gi|261752731|ref|ZP_05996440.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella suis bv. 5 str. 513] gi|261755390|ref|ZP_05999099.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella suis bv. 3 str. 686] gi|261758618|ref|ZP_06002327.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella sp. F5/99] gi|265989084|ref|ZP_06101641.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella pinnipedialis M292/94/1] gi|265991497|ref|ZP_06104054.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella melitensis bv. 1 str. Rev.1] gi|265998547|ref|ZP_06111104.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella ceti M490/95/1] gi|54037823|sp|P65428|RSMH_BRUSU RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|54041486|sp|P65427|RSMH_BRUME RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|68565395|sp|Q57C70|RSMH_BRUAB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|88909188|sp|Q2YM63|RSMH_BRUA2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263445807|sp|A9M698|RSMH_BRUC2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263445814|sp|B2S6R2|RSMH_BRUA1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263447062|sp|C0RE78|RSMH_BRUMB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|17982491|gb|AAL51752.1| sam-dependent methytransferase [Brucella melitensis bv. 1 str. 16M] gi|23348287|gb|AAN30352.1| conserved hypothetical protein TIGR00006 [Brucella suis 1330] gi|62196464|gb|AAX74764.1| conserved hypothetical protein TIGR00006 [Brucella abortus bv. 1 str. 9-941] gi|82616357|emb|CAJ11414.1| Bacterial methyltransferase [Brucella melitensis biovar Abortus 2308] gi|161336198|gb|ABX62503.1| S-adenosyl-methyltransferase MraW [Brucella canis ATCC 23365] gi|189020137|gb|ACD72859.1| Bacterial methyltransferase [Brucella abortus S19] gi|225641286|gb|ACO01200.1| S-adenosyl-methyltransferase MraW [Brucella melitensis ATCC 23457] gi|256000018|gb|ACU48417.1| S-adenosyl-methyltransferase [Brucella microti CCM 4915] gi|260095924|gb|EEW79801.1| bacterial methyltransferase [Brucella abortus NCTC 8038] gi|260151400|gb|EEW86494.1| bacterial methyltransferase [Brucella melitensis bv. 1 str. 16M] gi|260155574|gb|EEW90654.1| bacterial methyltransferase [Brucella suis bv. 4 str. 40] gi|260668699|gb|EEX55639.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella abortus bv. 4 str. 292] gi|260672639|gb|EEX59460.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella abortus bv. 2 str. 86/8/59] gi|260916031|gb|EEX82892.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella abortus bv. 3 str. Tulya] gi|260921166|gb|EEX87819.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella ceti B1/94] gi|261297275|gb|EEY00772.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella pinnipedialis B2/94] gi|261304641|gb|EEY08138.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella pinnipedialis M163/99/10] gi|261738602|gb|EEY26598.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella sp. F5/99] gi|261742484|gb|EEY30410.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella suis bv. 5 str. 513] gi|261745143|gb|EEY33069.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella suis bv. 3 str. 686] gi|262553171|gb|EEZ09005.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella ceti M490/95/1] gi|263002281|gb|EEZ14856.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella melitensis bv. 1 str. Rev.1] gi|263093648|gb|EEZ17653.1| bacterial methyltransferase [Brucella melitensis bv. 2 str. 63/9] gi|264661281|gb|EEZ31542.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella pinnipedialis M292/94/1] Length = 346 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 167/326 (51%), Positives = 217/326 (66%), Gaps = 6/326 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 HVPVL+ +VI L PAPG VI+D TFGAGGY+R + G++VIA+DRDP A+ G+ + Sbjct: 18 HVPVLIAEVIDALKPAPGAVIVDGTFGAGGYTRRILETGADVIAIDRDPTAIEAGRAMEK 77 Query: 80 DYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++ + +L ++ FS L + V VDGVV D+GVSSMQID +RGFSFQK GPLD Sbjct: 78 EFPGRLNLVESRFSALDEAVARMSGAGKKVDGVVLDIGVSSMQIDEAERGFSFQKDGPLD 137 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRMS G SA+D VN+ DL RI LGEE+ A RIA I KRR + PF T DL++ Sbjct: 138 MRMSSRGPSAADAVNRLKTGDLARIFNFLGEERHAGRIARMIEKRRAAKPFTRTLDLANA 197 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 I+ V + +RIHPATR FQALR++VN+E+ ELA+ L +AE+ LK GG L+VV+FHSLE Sbjct: 198 IETLVGRNPKDRIHPATRVFQALRVYVNDELGELARALLAAERILKPGGRLVVVTFHSLE 257 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 DR+VK+FFA R+G RHM ++ F K V PT E+ N R+RSAKLRAG Sbjct: 258 DRMVKRFFADRAGGSAGSRHMPETHMRLPSFTPAVKGAVGPTPEEEERNPRARSAKLRAG 317 Query: 315 MRTVERSIEDD-SFVHLPRLPTLSQF 339 +RT +EDD S LP+LP ++ Sbjct: 318 IRTENPPLEDDLSLFGLPKLPETNEL 343 >gi|254714473|ref|ZP_05176284.1| S-adenosyl-methyltransferase MraW [Brucella ceti M644/93/1] gi|254717371|ref|ZP_05179182.1| S-adenosyl-methyltransferase MraW [Brucella ceti M13/05/1] gi|261219203|ref|ZP_05933484.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella ceti M13/05/1] gi|261322263|ref|ZP_05961460.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella ceti M644/93/1] gi|260924292|gb|EEX90860.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella ceti M13/05/1] gi|261294953|gb|EEX98449.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella ceti M644/93/1] Length = 346 Score = 386 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 167/326 (51%), Positives = 217/326 (66%), Gaps = 6/326 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 HVPVL+ +VI L PAPG VI+D TFGAGGY+R + G++VIA+DRDP A+ G+ + Sbjct: 18 HVPVLIAEVIDALKPAPGAVIVDGTFGAGGYTRRILETGADVIAIDRDPTAIEAGRAMEK 77 Query: 80 DYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++ + +L ++ FS L + V VDGVV D+GVSSMQID +RGFSFQK GPLD Sbjct: 78 EFPGRLNLVESRFSALDEAVARMSGAGKKVDGVVLDIGVSSMQIDEAERGFSFQKDGPLD 137 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRMS G SA+D VN+ DL RI LGEE+ A RIA I KRR + PF T DL++ Sbjct: 138 MRMSSRGPSAADAVNRLKTGDLARIFNFLGEERHAGRIARMIEKRRAAKPFTRTLDLTNA 197 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 I+ V + +RIHPATR FQALR++VN+E+ ELA+ L +AE+ LK GG L+VV+FHSLE Sbjct: 198 IETLVGRNPKDRIHPATRVFQALRVYVNDELGELARALLAAERILKPGGRLVVVTFHSLE 257 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 DR+VK+FFA R+G RHM ++ F K V PT E+ N R+RSAKLRAG Sbjct: 258 DRMVKRFFADRAGGSAGSRHMPETHMRLPSFTPAVKGAVGPTPEEEERNPRARSAKLRAG 317 Query: 315 MRTVERSIEDD-SFVHLPRLPTLSQF 339 +RT +EDD S LP+LP ++ Sbjct: 318 IRTENPPLEDDLSLFGLPKLPETNEL 343 >gi|73748191|ref|YP_307430.1| S-adenosyl-methyltransferase MraW [Dehalococcoides sp. CBDB1] gi|147668966|ref|YP_001213784.1| S-adenosyl-methyltransferase MraW [Dehalococcoides sp. BAV1] gi|289432241|ref|YP_003462114.1| S-adenosyl-methyltransferase MraW [Dehalococcoides sp. GT] gi|88909198|sp|Q3ZZA4|RSMH_DEHSC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446194|sp|A5FSB7|RSMH_DEHSB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|73659907|emb|CAI82514.1| S-adenosyl-methyltransferase MraW [Dehalococcoides sp. CBDB1] gi|146269914|gb|ABQ16906.1| S-adenosyl-methyltransferase MraW [Dehalococcoides sp. BAV1] gi|288945961|gb|ADC73658.1| S-adenosyl-methyltransferase MraW [Dehalococcoides sp. GT] Length = 349 Score = 386 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 123/329 (37%), Positives = 190/329 (57%), Gaps = 19/329 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 H+PV+LE+ I L PG +D T GAGG+S + + G ++++D DP A++ Sbjct: 5 PHIPVMLEESIQGLGVIPGGRYVDCTLGAGGHSEAILEHSYPGGQLLSIDADPSAITLAA 64 Query: 76 ETMRDYKEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E ++ + L F+ L+D V G++FDLG+SSMQ+D + GFSFQ P Sbjct: 65 ERLKSFGSSVLLVNDNFANLKDICQRYEYMPVHGILFDLGLSSMQLDRQESGFSFQTEAP 124 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMR S ++A+D++N +V +L+ ++ GEE + RIA AI ++R PF+TT +L Sbjct: 125 LDMRFSPEQELTAADIINGYDVTELSDLIWKYGEEPFSRRIARAIAEKR---PFKTTTEL 181 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++ I++ V ++ RIHPATR+FQALRI VN E+ L L A L GG L+V+S+H Sbjct: 182 AAAIERAV-GGRHGRIHPATRTFQALRIAVNEELSHLESALSQAHSLLGHGGRLVVISYH 240 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK++F + + + H + I ++V+ P+ E+++ N RSRSAK Sbjct: 241 SLEDRIVKQYFQKEAKGCICPDDIPQCVCDHQPSLRIINRRVITPSDEEISRNPRSRSAK 300 Query: 311 LRAGMRTVER-------SIEDDSFVHLPR 332 +R R +E S ED+ H+ R Sbjct: 301 MRVAERIIEPGEGRFFSSREDELVNHVSR 329 >gi|288904625|ref|YP_003429846.1| S-adenosyl-dependent methyltransferase MraW [Streptococcus gallolyticus UCN34] gi|288731350|emb|CBI12901.1| S-adenosyl-dependent methyltransferase MraW [Streptococcus gallolyticus UCN34] Length = 316 Score = 386 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 112/321 (34%), Positives = 174/321 (54%), Gaps = 17/321 (5%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 M++ H H+ VLL + + +L+ P V +DAT G G+S ++ A D Sbjct: 1 MTTDFH-----HITVLLHETVDMLDIKPDGVYVDATLGGAGHSEYLLSKLGPTGHLYAFD 55 Query: 66 RDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120 +D A+ Q ++DY K Q + + F L + GV DG+++DLGVSS Q+D Sbjct: 56 QDQTAIDNAQIRLKDYIEKGQVTFIKDNFRNLASNLASHGVTEIDGILYDLGVSSPQLDE 115 Query: 121 GDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS++K PLDMRM+ +SA DVVN + DL RI GE+K + +IA I + Sbjct: 116 RERGFSYKKDAPLDMRMNRDQDLSAYDVVNTYDYHDLVRIFFKYGEDKFSKQIARKIEQA 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R+ P +TT +L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A + Sbjct: 176 RKVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIEL 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297 L G + V++FHSLEDRL K+ F S V IP + P + +K ++P++ Sbjct: 236 LAVDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPEDMQPK-LALVNRKPILPSE 294 Query: 298 EDVAFNRRSRSAKLRAGMRTV 318 E++ N RS SAKLR + Sbjct: 295 EELEVNNRSHSAKLRVARKVR 315 >gi|157692188|ref|YP_001486650.1| S-adenosyl-methyltransferase MraW [Bacillus pumilus SAFR-032] gi|263446003|sp|A8FCX3|RSMH_BACP2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|157680946|gb|ABV62090.1| S-adenosyl-methyltransferase [Bacillus pumilus SAFR-032] Length = 310 Score = 386 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 107/309 (34%), Positives = 166/309 (53%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSC 73 + H VLL++ + LN +D T G G+S S +I D+D A+ Sbjct: 1 MFQHETVLLKETVDGLNVKEDGTYVDCTLGGAGHSSYLLSQLSEKGTLIGFDQDDAALDH 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E + K ++ F L++ + ++G VDGV+FDLGVSS Q+D +RGFS+ Sbjct: 61 AREKLAGSKANILFIKSNFRYLKERLNEQGITSVDGVIFDLGVSSPQLDTPERGFSYHHD 120 Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM S +SA VVN+ +DL RI GEEK + +IA I + R+ AP +TT Sbjct: 121 APLDMRMDQSAALSAKKVVNEWPFEDLVRIFYKYGEEKFSKQIARKIEEARKKAPIETTG 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I++ + ++ HPA R FQA+RI VN+E++ + L A + L G + V+ Sbjct: 181 ELVDIIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALEQAIELLNPKGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F S + + + IT+K +V +++++ N R+R Sbjct: 241 TFHSLEDRICKSTFREMSSLPELPHGLPVIPEGLEPKLKLITRKPIVASEQELEHNNRAR 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRIAEK 309 >gi|167751501|ref|ZP_02423628.1| hypothetical protein EUBSIR_02502 [Eubacterium siraeum DSM 15702] gi|167655309|gb|EDR99438.1| hypothetical protein EUBSIR_02502 [Eubacterium siraeum DSM 15702] Length = 308 Score = 386 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 116/303 (38%), Positives = 174/303 (57%), Gaps = 8/303 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77 H+PVLL + I L+ P + +D T G G+S K +I DRDP AV +E Sbjct: 7 HIPVLLSETIESLDIKPDGIYVDCTTGFAGHSSEIAKRLTTGRLIGFDRDPDAVKAAEEK 66 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++DY +L FS + + + GV DGV+ DLGVSS Q+D +RGFS+ + PLD Sbjct: 67 LKDYPH--TLINRKFSTFDESLDEIGVGKVDGVLMDLGVSSYQLDTAERGFSYHEDAPLD 124 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRMS SG+SA DVVN+ + + L +IL GEEK A I I+K R++AP +TT +L+ + Sbjct: 125 MRMSKSGLSAYDVVNEYSKEQLEKILFEYGEEKFAHGIVSGILKARETAPIKTTLELAEI 184 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 +++ V +P ++FQA+RI VN E++EL +G+ A + L GG L +++FHS+E Sbjct: 185 VKRNVPLKVRKEKNPCKKTFQAIRIEVNGELDELKKGMSEAFERLSQGGRLAIITFHSIE 244 Query: 255 DRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 DR+VK F + +++ +K V ++E++A N RSRSAKLR Sbjct: 245 DRIVKNTFREYCTGCTCPPDFPVCVCGKKPRGRTVYRKPVTASEEELAVNNRSRSAKLRV 304 Query: 314 GMR 316 + Sbjct: 305 IEK 307 >gi|306832860|ref|ZP_07465994.1| S-adenosyl-methyltransferase MraW [Streptococcus bovis ATCC 700338] gi|304424999|gb|EFM28131.1| S-adenosyl-methyltransferase MraW [Streptococcus bovis ATCC 700338] Length = 338 Score = 386 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 111/324 (34%), Positives = 173/324 (53%), Gaps = 17/324 (5%) Query: 6 CKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVI 62 K M++ H H+ VLL + + +L+ P + +DAT G G+S ++ Sbjct: 20 MKGMTTDFH-----HITVLLHETVDMLDIKPDGIYVDATLGGAGHSEYLLSKLGPTGHLY 74 Query: 63 ALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQ 117 A D+D A+ Q ++DY K Q + + F L + GV DG+++DLGVSS Q Sbjct: 75 AFDQDQTAIDNAQIRLKDYIEKGQVTFIKDNFRNLVSNLAMHGVTEIDGILYDLGVSSPQ 134 Query: 118 IDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 +D +RGFS++K LDMRM+ +SA DVVN + DL RI GE+K + +IA I Sbjct: 135 LDERERGFSYKKDASLDMRMNRDQDLSAYDVVNTYDYHDLVRIFFKYGEDKFSKQIARKI 194 Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 + R P +TT +L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A Sbjct: 195 EQARTVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQA 254 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVV 294 + L G + V++FHSLEDRL K+ F S V IP + P + +K ++ Sbjct: 255 IELLAVDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPEDMQPK-LTLVNRKPIL 313 Query: 295 PTQEDVAFNRRSRSAKLRAGMRTV 318 P++E++ N RS SAKLR + Sbjct: 314 PSEEELEVNNRSHSAKLRVARKVR 337 >gi|172057976|ref|YP_001814436.1| S-adenosyl-methyltransferase MraW [Exiguobacterium sibiricum 255-15] gi|263447041|sp|B1YIU3|RSMH_EXIS2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|171990497|gb|ACB61419.1| S-adenosyl-methyltransferase MraW [Exiguobacterium sibiricum 255-15] Length = 312 Score = 386 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 116/312 (37%), Positives = 176/312 (56%), Gaps = 10/312 (3%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74 + +H VL + I LN P + +D T G G+S K ++ A D+D A++ Sbjct: 1 MFEHETVLKWESIKGLNIKPDGIYVDCTLGGAGHSEEIVKQLTTGHLYAFDQDDVALAHA 60 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E + Y+ +F+L ++ F L++ + + VDG++FDLGVSS Q+D G+RGFS+ Sbjct: 61 AERLAAYEGRFTLIKSNFVHLKEELEARSVTKVDGILFDLGVSSPQLDEGERGFSYNFDA 120 Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM + +SA +VVN+ DL RIL GEEK + +IA I K R+ AP +TT + Sbjct: 121 RLDMRMDQTSPLSAYEVVNEWPYNDLVRILFTYGEEKFSKQIARKIEKAREIAPIETTFE 180 Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L LI+ + ++ HPA R+FQA+RI VN+E+ + + A L GG L V++ Sbjct: 181 LVELIKDAIPAPARRKGGHPAKRTFQAIRIAVNDELNVFDRAVYQAIDLLAVGGRLCVIT 240 Query: 250 FHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 FHSLEDR+ K+ F +S ++ MIP P + +T+K + +++ NRRSR Sbjct: 241 FHSLEDRMCKQAFKEKSSLPELPQGLPMIPKEFEP-ELRLVTRKPITAGDDELDDNRRSR 299 Query: 308 SAKLRAGMRTVE 319 SAKLR + E Sbjct: 300 SAKLRIVEKMKE 311 >gi|256061496|ref|ZP_05451640.1| S-adenosyl-methyltransferase MraW [Brucella neotomae 5K33] gi|261325503|ref|ZP_05964700.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella neotomae 5K33] gi|261301483|gb|EEY04980.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella neotomae 5K33] Length = 346 Score = 386 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 167/326 (51%), Positives = 216/326 (66%), Gaps = 6/326 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 HVPVL+ +VI L PAPG VI+D TFGAGGY+R + G++VIA+DRDP A+ G+ + Sbjct: 18 HVPVLIAEVIDALKPAPGAVIVDGTFGAGGYTRRILETGADVIAIDRDPTAIEAGRAMEK 77 Query: 80 DYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++ + L ++ FS L + V VDGVV D+GVSSMQID +RGFSFQK GPLD Sbjct: 78 EFPGRLILVESRFSALDEAVARMSGAGKKVDGVVLDIGVSSMQIDEAERGFSFQKDGPLD 137 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRMS G SA+D VN+ DL RI LGEE+ A RIA I KRR + PF T DL++ Sbjct: 138 MRMSSRGPSAADAVNRLKTGDLARIFNFLGEERHAGRIARMIEKRRAAKPFTRTLDLANA 197 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 I+ V + +RIHPATR FQALR++VN+E+ ELA+ L +AE+ LK GG L+VV+FHSLE Sbjct: 198 IETLVGRNPKDRIHPATRVFQALRVYVNDELGELARALLAAERILKPGGRLVVVTFHSLE 257 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 DR+VK+FFA R+G RHM ++ F K V PT E+ N R+RSAKLRAG Sbjct: 258 DRMVKRFFADRAGGSAGSRHMPETHMRLPSFTPAVKGAVGPTPEEEERNPRARSAKLRAG 317 Query: 315 MRTVERSIEDD-SFVHLPRLPTLSQF 339 +RT +EDD S LP+LP ++ Sbjct: 318 IRTENPPLEDDLSLFGLPKLPETNEL 343 >gi|317495032|ref|ZP_07953404.1| MraW methylase [Gemella moribillum M424] gi|316914804|gb|EFV36278.1| MraW methylase [Gemella moribillum M424] Length = 312 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 110/307 (35%), Positives = 169/307 (55%), Gaps = 8/307 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74 + H VLL + +A LN V +D T G G+S K + A D+D A+ Sbjct: 1 MFKHYSVLLNEAVAGLNIKENGVYVDCTLGGAGHSLEILKQLTDGKLYAFDQDSVALENA 60 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++ ++DY ++ ++ F L++ + + GV DGV++DLGVSS Q+D +RGFS+ Sbjct: 61 KDKLKDYADKVVFIKSNFKNLREKLLEHGVTEVDGVLYDLGVSSPQLDTPERGFSYNYDT 120 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM ISA ++VN+ + +L +I GEEK + +IA + K+R P +TT + Sbjct: 121 RLDMRMDTDAKISAYEIVNEYDYNELVKIFYRYGEEKFSKQIARNVEKKRLEKPIETTFE 180 Query: 191 LSSLIQKTVYFSKNN-RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I++++ +K HPA R FQA+RI VNNE+ L A +K G + V++ Sbjct: 181 LVDIIKESIPAAKRRTGGHPAKRVFQAIRIAVNNELSVFEDSLEQAIDIVKKDGRISVIT 240 Query: 250 FHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+ K+ F S + K + I A + IT+K + PT +++ N RSRS Sbjct: 241 FHSLEDRICKQIFNSYAKRKEIPKNLPILPEESLAKLKIITRKPIYPTDKELEENNRSRS 300 Query: 309 AKLRAGM 315 AKLR Sbjct: 301 AKLRIAE 307 >gi|86749109|ref|YP_485605.1| methyltransferase [Rhodopseudomonas palustris HaA2] gi|123292796|sp|Q2IYL6|RSMH_RHOP2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|86572137|gb|ABD06694.1| methyltransferase [Rhodopseudomonas palustris HaA2] Length = 337 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 145/332 (43%), Positives = 198/332 (59%), Gaps = 5/332 (1%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAV 71 + H+PVL + + LL P G + LD TFGAGGYSR + + VIA+DRD A+ Sbjct: 1 MSEARPRHIPVLGPEAVTLLAPRDGGIYLDGTFGAGGYSRLILEAAATRVIAIDRDRSAI 60 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQ 128 + G + ++ + +L + FS L + +G VDGVV D+GVSSMQ+D DRGFSF+ Sbjct: 61 AGGFDLVQGAGGRLTLVEDRFSNLAEVCAAQGAPAVDGVVMDIGVSSMQVDQADRGFSFR 120 Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 + GPLDMRM G +A+DVV +A+ DL I+ I GEEK + +A A++ R+ AP TT Sbjct: 121 QDGPLDMRMGTDGPTAADVVARASETDLANIIYIFGEEKFSRHVARAVIAARKEAPITTT 180 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 + L+ ++ V +K +IHPATR+FQALRIFVN E++EL Q L +AE+ LK GG L VV Sbjct: 181 KALADIVASVV-RAKPGQIHPATRTFQALRIFVNEELDELYQALAAAERVLKPGGRLAVV 239 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 +FHSLEDR+VK F A RS RH+ F +TK+ +VA N R+RS Sbjct: 240 TFHSLEDRIVKTFLAERSRVGGGSRHLPELAQAAPSFTVLTKRPTTAGDAEVAANPRARS 299 Query: 309 AKLRAGMRTVERSIEDDSFVHLPRLPTLSQFR 340 AKLR G RT + D P L + + Sbjct: 300 AKLRGGERTAAPAHRPDDLPGWPTLAGVMKAG 331 >gi|57234909|ref|YP_181088.1| S-adenosyl-methyltransferase MraW [Dehalococcoides ethenogenes 195] gi|88909197|sp|Q3Z9L1|RSMH_DEHE1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|57225357|gb|AAW40414.1| S-adenosyl-methyltransferase MraW [Dehalococcoides ethenogenes 195] Length = 349 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 121/313 (38%), Positives = 186/313 (59%), Gaps = 12/313 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72 T H+PV+LE+ I L PG +D T GAGG+S + + G ++++D DP A++ Sbjct: 2 TEYPHIPVMLEESIQGLGVIPGGRYVDCTLGAGGHSEAILEHSYPGGQLLSIDADPKAIA 61 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 E ++ + L F+ L+D V G++FDLG+SSMQ+D + GFSFQ Sbjct: 62 LAAERLKCFGSSVLLVNDNFANLKDICQRYEYMPVHGILFDLGLSSMQLDREESGFSFQT 121 Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMR S +SA+D+VN ++ L+ ++ GEE + RIA AI+++R PF+TT Sbjct: 122 EAPLDMRFSPGQELSAADIVNTYDLAGLSDLIWKYGEEPFSRRIARAILEKR---PFKTT 178 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+S+I+K V ++ RIHPATR+FQALRI VN E+ L L A+ L GG L+V+ Sbjct: 179 TELASVIEKAV-GGRHGRIHPATRTFQALRIAVNEELSHLESALAQAQSLLGHGGRLVVI 237 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 S+HSLEDR+VK++F + + + H + I ++V+ P+ E+++ N RSR Sbjct: 238 SYHSLEDRIVKQYFQKEAKGCICPDDIPQCVCNHKPSLRLINRRVITPSDEEISRNPRSR 297 Query: 308 SAKLRAGMRTVER 320 SAK+R R ++ Sbjct: 298 SAKMRVAERIIQP 310 >gi|313637016|gb|EFS02589.1| S-adenosyl-methyltransferase MraW [Listeria seeligeri FSL S4-171] Length = 312 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 102/311 (32%), Positives = 173/311 (55%), Gaps = 9/311 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H VLL + + +L P + +DAT G G+S ++ A D+D A+ Sbjct: 1 MFKHETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + Y ++ + ++ F +++ + + G VDG+++DLGVSS Q+D +RGFS+ + Sbjct: 61 AKIKLAAYSDKVTFVKSNFRYMKEALNEHGISEVDGILYDLGVSSPQLDERERGFSYHQD 120 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM ++A VVN+ + +DL RI GEEK + +IA I +RR+ P +TT Sbjct: 121 AALDMRMDREQELTAKIVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTG 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I+ + ++ HP R+FQA+RI VN+E+ + L A +K GG + V+ Sbjct: 181 ELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLIKPGGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F + G + + + + F+ T+K +VP++E++ N R+R Sbjct: 241 TFHSLEDRITKHLFQEATKGPDLPPGLPVIPDEYKPDFKLATRKPIVPSEEELEQNNRAR 300 Query: 308 SAKLRAGMRTV 318 SAKLR + + Sbjct: 301 SAKLRVIEKII 311 >gi|169334628|ref|ZP_02861821.1| hypothetical protein ANASTE_01031 [Anaerofustis stercorihominis DSM 17244] gi|169259345|gb|EDS73311.1| hypothetical protein ANASTE_01031 [Anaerofustis stercorihominis DSM 17244] Length = 308 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 111/306 (36%), Positives = 170/306 (55%), Gaps = 8/306 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 H+ VL ++ I +LN + +D T G G+S CK S I +D+D F + Sbjct: 2 KHISVLYQETIDMLNIKEDGIYVDGTMGGAGHSLGICKKLSEEGIFIGIDQDDFVFDRAK 61 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + + F +++ + D G+D G++ DLGVSS QID RGFSF+K GP Sbjct: 62 VRLESTDCKKEFVKGNFHDIKEILMDLGIDKIDGMMADLGVSSFQIDDETRGFSFKKDGP 121 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S SA ++VN + +DL R++ GEE+ A IA I+K R+ P +TT +L Sbjct: 122 LDMRMDKSKSFSAKELVNTYSYEDLRRVISEYGEEQFAGNIAKHILKNREEKPIETTYEL 181 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + + HPA ++FQA+RI VN+EI+ L Q + L GG L V++FH Sbjct: 182 VEIIKNAIPKKFHQMKHPAKKTFQAIRIEVNDEIDALKQSVEDMIDVLDKGGRLAVITFH 241 Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VKK F+ + + + + + +T+K ++PT+E++ N RSRSAK Sbjct: 242 SLEDRIVKKVFSEYAKGCTCPKEFPVCVCGNTPKVKVLTRKPLLPTEEEIEANPRSRSAK 301 Query: 311 LRAGMR 316 LR + Sbjct: 302 LRVIEK 307 >gi|289435382|ref|YP_003465254.1| S-adenosyl-methyltransferase [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171626|emb|CBH28172.1| S-adenosyl-methyltransferase [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 312 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 102/311 (32%), Positives = 174/311 (55%), Gaps = 9/311 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H VLL + + +L P + +DAT G G+S ++ A D+D A+ Sbjct: 1 MFKHETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + Y ++ + ++ F +++ + ++G VDG+++DLGVSS Q+D +RGFS+ + Sbjct: 61 AKIKLAAYSDKVTFVKSNFRYMKEALNERGISEVDGILYDLGVSSPQLDERERGFSYHQD 120 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM ++A VVN+ + +DL RI GEEK + +IA I +RR+ P +TT Sbjct: 121 AALDMRMDREQELTAKIVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTG 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I+ + ++ HP R+FQA+RI VN+E+ + L A +K GG + V+ Sbjct: 181 ELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALSLIKPGGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F + G + + + + F+ T+K +VP++E++ N R+R Sbjct: 241 TFHSLEDRITKHLFQEATKGPDLPPGLPVIPDEYKPDFKLATRKPIVPSEEELEQNNRAR 300 Query: 308 SAKLRAGMRTV 318 SAKLR + + Sbjct: 301 SAKLRVIEKII 311 >gi|254512159|ref|ZP_05124226.1| S-adenosyl-methyltransferase MraW [Rhodobacteraceae bacterium KLH11] gi|221535870|gb|EEE38858.1| S-adenosyl-methyltransferase MraW [Rhodobacteraceae bacterium KLH11] Length = 330 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 151/333 (45%), Positives = 202/333 (60%), Gaps = 6/333 (1%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRD 67 M+ A + H+PVLL ++A + P V LD TFGAGGY+R + G+ VI +DRD Sbjct: 1 MAGAQTSSDKPHIPVLLRPLLAAVAPVS-GVWLDGTFGAGGYTRGLLEAGAEKVIGVDRD 59 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 P A + Y ++ + Q FS + +Y D +DGVV DLGVSSMQ+D +RGFSF Sbjct: 60 PLAFEMAADWAGGYGDRLVMQQGVFSCMDEYARD--LDGVVLDLGVSSMQLDQAERGFSF 117 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 K GPLDMRMS G SA+D+VN+A L IL GEE+ + RIA AIV+ R P T Sbjct: 118 MKDGPLDMRMSQQGDSAADLVNEATEAQLADILFHYGEERASRRIARAIVRARAEDPITT 177 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T L+ +I+ + K + HPATRSFQ LRI VN E EEL QGL +AE+ALK GG L V Sbjct: 178 TLRLAEIIESCLPRPKPGQSHPATRSFQGLRIAVNAEYEELFQGLMAAERALKPGGQLAV 237 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRS 306 V+FHS+EDR+VK+FF SR+GK P A F T+K V P +++ N R+ Sbjct: 238 VTFHSIEDRMVKRFFQSRAGKTGRANRYAPEMAQEQPQFTLKTRKAVGPDDQELEENPRA 297 Query: 307 RSAKLRAGMRTVERSIEDDSF-VHLPRLPTLSQ 338 RSAKLR +RT + E ++ + +P+L + + Sbjct: 298 RSAKLRVAVRTDAPAGEIEARAIGMPQLGGMGR 330 >gi|259501653|ref|ZP_05744555.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Lactobacillus iners DSM 13335] gi|302191140|ref|ZP_07267394.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners AB-1] gi|259166938|gb|EEW51433.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Lactobacillus iners DSM 13335] Length = 315 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 111/311 (35%), Positives = 171/311 (54%), Gaps = 13/311 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76 H VLL + I LN V +DATFG GG++ K ++I D+D +A+ ++ Sbjct: 4 KHYSVLLHETIDNLNLKNDGVYVDATFGGGGHASYLLKQLSNGHLIGFDQDEYAIELAKK 63 Query: 77 TM-----RDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSF 127 + + K + SL F LQ + G+DG+ +DLGVSS Q D +RGFS+ Sbjct: 64 SFSEVLKANSKPKLSLVHDNFGNLQQNLAKLGFIDGIDGIYYDLGVSSPQFDQPERGFSY 123 Query: 128 QKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + + LDMRM + + A +VN + K+L+ IL G+EK A +IA IV +R P Sbjct: 124 RFNARLDMRMDQTKDLDAYKIVNTWSQKELSNILFKYGDEKYARQIAKNIVAKRAIKPIT 183 Query: 187 TTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT +L +I++ + F++ HPA +SFQA+RI VN+E+E L + L A + LK GG + Sbjct: 184 TTFELVDIIKEAIPAFARRTGGHPAKKSFQAIRIAVNDELEVLEKSLLDAIEILKPGGRI 243 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V++F SLED++VKK F S + ++ + I++K +V T +++ N R Sbjct: 244 CVITFQSLEDKIVKKIFKKYSDVDIPRGMPQIPDSLKPTLKIISRKPIVATDKELEENNR 303 Query: 306 SRSAKLRAGMR 316 S SAKLR + Sbjct: 304 SHSAKLRVAEK 314 >gi|302389508|ref|YP_003825329.1| S-adenosyl-methyltransferase MraW [Thermosediminibacter oceani DSM 16646] gi|302200136|gb|ADL07706.1| S-adenosyl-methyltransferase MraW [Thermosediminibacter oceani DSM 16646] Length = 313 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 121/306 (39%), Positives = 173/306 (56%), Gaps = 10/306 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H PVLLE+ I LL+P PG V +DAT G GG+ K VI +DRD AV +E Sbjct: 5 HKPVLLEETINLLDPKPGGVYVDATLGGGGHFSEILKRVGENGTVIGIDRDEDAVVNARE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ F ++ + +GVDGV+FDLGVSS Q+D RGFS+ K PL Sbjct: 65 RFSQSPA-ATIVHDNFKNIKRIVYSLGLEGVDGVIFDLGVSSYQLDEESRGFSYIKDAPL 123 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + ++A DVVN+ +L +I+ GEE+ A RIA I ++R+ P +TT +L Sbjct: 124 DMRMDRNQDLTAKDVVNKMTKSELAKIIKEYGEERWADRIAEFICEKRKKKPIETTGELV 183 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + + HPA R+FQALRI+VN E+E L+ L+ A L GG + V++FH Sbjct: 184 EIIKAAIPARARRGGPHPAKRTFQALRIYVNGELEILSASLKDAVDILNPGGRICVITFH 243 Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK F + + + + + +T K V PTQ+++ N R+RSAK Sbjct: 244 SLEDRIVKHTFRELAKGCTCPKDSPLCTCKSERALKILTPKPVCPTQDEIDANPRARSAK 303 Query: 311 LRAGMR 316 LRA + Sbjct: 304 LRACEK 309 >gi|118590900|ref|ZP_01548300.1| S-adenosyl-methyltransferase MraW [Stappia aggregata IAM 12614] gi|118436422|gb|EAV43063.1| S-adenosyl-methyltransferase MraW [Stappia aggregata IAM 12614] Length = 346 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 162/327 (49%), Positives = 223/327 (68%), Gaps = 7/327 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 HVPVLL++V+ L P PG VI+D TFGAGGYSR+ ++G+ V+ +DRDP A++ GQE ++ Sbjct: 19 HVPVLLKEVLEWLAPQPGDVIVDGTFGAGGYSRAILELGARVVGIDRDPDAIAGGQELVK 78 Query: 80 DYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + + L F+ L+ + G VDGVV DLGVSSMQ+D +RGFSF + GPLDMR Sbjct: 79 ASEGRLMLVPGQFADLETHARSCGFEGVDGVVLDLGVSSMQLDEAERGFSFLRDGPLDMR 138 Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 M +G SA+DVVN+ VKDL R++G+LGEEK+A+ +AHAI K R+ PF T +L++LI+ Sbjct: 139 MEQAGPSAADVVNELPVKDLIRVIGLLGEEKRATTVAHAIDKARKEKPFTRTLELANLIE 198 Query: 197 KTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 K + K +IHPATR+FQALRI+VN E+ + A+ L +AE+ LK GG L++VSFHSLED Sbjct: 199 KVLGRSPKKAQIHPATRTFQALRIYVNGELHQAAEALGAAERILKPGGRLVLVSFHSLED 258 Query: 256 RLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 R+VK+FF R+ + RHM + PA F+ +T+K V + N R+RSAKLRAG Sbjct: 259 RIVKRFFQDRTRTRGGGSRHMPEEDVPPATFELLTRKAVEAASAETDINPRARSAKLRAG 318 Query: 315 MRTVERSIEDDSFVHLPRLPTLSQFRG 341 RT + E D +H +P L+ F G Sbjct: 319 RRTEAEARELD--IHQAGVPRLAAFHG 343 >gi|312622933|ref|YP_004024546.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor kronotskyensis 2002] gi|312203400|gb|ADQ46727.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor kronotskyensis 2002] Length = 307 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 128/309 (41%), Positives = 189/309 (61%), Gaps = 10/309 (3%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSC 73 + +H+PVLLE+ ++ L P + +DATFG GG+S+ + SN +IA+DRD A+ Sbjct: 1 MFEHIPVLLEESVSFLITNPDGIYVDATFGLGGHSKRILEKISNKGFLIAIDRDLEAIEL 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130 G+ + YK + ++FS++ + + G+ DG++FD GVSS+Q+D +RGFS+ K Sbjct: 61 GKRKLEAYK-NVKIVHSSFSKVDEVLECLGIEKIDGILFDFGVSSLQLDKQERGFSYNKE 119 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM S ++A DVVN + +DL RI+ GEE+ A RIA AIV+RR P +TT Sbjct: 120 AFLDMRMDTTSKLTAYDVVNYYSQEDLERIIREYGEERFARRIAKAIVERRSKKPIETTT 179 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 DLS LI V K+ HPA R+FQA+RI VN E+EE+ L + + LK+GG + +S Sbjct: 180 DLSRLISSVVPKPKDGS-HPAQRTFQAIRIEVNRELEEIKIALEKSLRFLKSGGRICAIS 238 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK+FF S + + + + ITKK + P++E++ N+RS S Sbjct: 239 FHSLEDRIVKEFFKFHSLECICPKDIPVCRCGKKKELNIITKKPITPSKEEIESNKRSHS 298 Query: 309 AKLRAGMRT 317 AKLR + Sbjct: 299 AKLRVAEKV 307 >gi|297583942|ref|YP_003699722.1| S-adenosyl-methyltransferase MraW [Bacillus selenitireducens MLS10] gi|297142399|gb|ADH99156.1| S-adenosyl-methyltransferase MraW [Bacillus selenitireducens MLS10] Length = 317 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 107/309 (34%), Positives = 168/309 (54%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSC 73 + +H VL E+ + L PG V +D T G GG+S + +IA D+D A++ Sbjct: 1 MFEHDTVLREETVEGLAIRPGGVYVDCTLGGGGHSERILQELGEDGKLIAFDQDESAIAH 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E ++ Y ++ + + F L++ + G VDG++FDLGVSS Q D +RGFS++ Sbjct: 61 AKERLKPYGDRLHIVKRNFRFLKEELEKLGYREVDGIIFDLGVSSPQFDVPERGFSYRFD 120 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM S ++A V+N+ + +DL +I GEEK A IA I K R++ P +TT Sbjct: 121 APLDMRMDQTSELTAHKVINEWSFEDLMKIFSRYGEEKFAKYIARKIEKYRETKPVETTF 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I+ + ++ HPA R+FQA+RI VN+E+ + L A GG + V+ Sbjct: 181 ELVEIIKDAIPAPARRKGGHPAKRTFQAIRIAVNDELGVFEKALEDAVTMTAPGGRIAVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K+ F S R + + V + I +K + +++ N RS Sbjct: 241 TFHSLEDRICKQLFRKLSQPPELPRGMPVVPEGYEPVLKLINRKPITANVDELDDNHRSH 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRIAEK 309 >gi|295092968|emb|CBK82059.1| S-adenosyl-methyltransferase MraW [Coprococcus sp. ART55/1] Length = 311 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 101/305 (33%), Positives = 171/305 (56%), Gaps = 9/305 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VLLE+ I LN P + +D T G G+S K G +I +D+D A++ + Sbjct: 5 HKSVLLEETIDNLNIKPDGIYVDGTLGGAGHSEQIVKRLGEGGRLIGIDQDEDAIAAASK 64 Query: 77 TMRDYKEQFSLFQAT---FSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + Y ++ ++ + F ++ D + + VDG++ DLGVSS Q+D DRGF+++ PL Sbjct: 65 RLEPYGDKVTIVRDNYQNFRRILDELNIQKVDGILLDLGVSSYQLDNADRGFTYRVDAPL 124 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM +A D+VN + +L RIL GEE+ A IA+ I K R++ +TT++L+ Sbjct: 125 DMRMDNRQTKTAKDIVNDYSEAELFRILKDYGEERYAKSIAYHICKYRENKVIETTEELN 184 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ ++ +N + HP+ ++FQA+RI +N E++ L + +L GG L +++FH Sbjct: 185 DIIRGSIPAKARNGQGHPSKQTFQAIRIELNRELDVLRDSIDGMIASLNPGGRLCIITFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK F + + + + + IT+K ++P + ++ N RS+S+K Sbjct: 245 SLEDRIVKLAFRKNENPCICPPNFPVCTCGRKPLGKVITRKPIIPGERELEENSRSKSSK 304 Query: 311 LRAGM 315 LR Sbjct: 305 LRVFE 309 >gi|312794111|ref|YP_004027034.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181251|gb|ADQ41421.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor kristjanssonii 177R1B] Length = 307 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 126/309 (40%), Positives = 194/309 (62%), Gaps = 10/309 (3%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSC 73 + +H+PVLLE+ ++ L P + +DATFG GG+S+ + SN ++A+D+D A+ Sbjct: 1 MFEHIPVLLEESVSFLITNPDGIYVDATFGLGGHSKRILEKLSNKGFLVAIDKDLEAIEL 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130 G+ + YK + ++FS++ + + G+ DG++FD GVSS+Q+D +RGFS+ K Sbjct: 61 GKRRLEGYK-NIKIVHSSFSKVDEVLESLGIEKIDGILFDFGVSSLQLDKQERGFSYSKE 119 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM S ++A DV+N + +DL RI+ GEE+ A RIA AIV+RR++ P +TT Sbjct: 120 AFLDMRMDTTSKLTAYDVINFYSQEDLERIIREYGEERFARRIAKAIVERRRNKPIETTT 179 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 +LSSLI V K+ HPA R+FQA+RI VN E+EE+ L + + LK+GG + +S Sbjct: 180 ELSSLISSVVPKPKDGS-HPAQRTFQAIRIEVNRELEEIKIALEKSLRFLKSGGRICAIS 238 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK+FF S + + + + + ITKK +VP++E++ N+RS S Sbjct: 239 FHSLEDRIVKEFFKFHSLECICPKDIPVCRCGKKKELEIITKKPIVPSKEEIERNKRSHS 298 Query: 309 AKLRAGMRT 317 AKLR + Sbjct: 299 AKLRVAQKV 307 >gi|294852766|ref|ZP_06793439.1| methylase MraW [Brucella sp. NVSL 07-0026] gi|294821355|gb|EFG38354.1| methylase MraW [Brucella sp. NVSL 07-0026] Length = 346 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 166/326 (50%), Positives = 215/326 (65%), Gaps = 6/326 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 HVPVL+ +VI L PAPG VI+D TFGAGGY+R + G++VIA+DRDP A+ G+ + Sbjct: 18 HVPVLIAEVIDALKPAPGAVIVDGTFGAGGYTRRILETGADVIAIDRDPTAIEAGRAMEK 77 Query: 80 DYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++ + +L ++ FS L + V VDGVV D+GVSSMQID +RGFSFQK GPLD Sbjct: 78 EFPGRLNLVESRFSALDEAVARMSGAGKKVDGVVLDIGVSSMQIDEAERGFSFQKDGPLD 137 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRMS G SA+D VN+ DL RI LGEE+ A RIA I KRR PF T DL++ Sbjct: 138 MRMSSRGPSAADAVNRLKTGDLARIFNFLGEERHAGRIARMIEKRRAPKPFTRTLDLANA 197 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 I+ V + +RIH ATR FQALR++VN+E+ ELA+ L +AE+ LK GG L+VV+FHSLE Sbjct: 198 IETLVGRNPKDRIHSATRVFQALRVYVNDELGELARALLAAERILKPGGRLVVVTFHSLE 257 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 DR+VK+FFA R+G RHM ++ F K V PT E+ N R+RSAKLRAG Sbjct: 258 DRMVKRFFADRAGGSAGSRHMPETHMRLPSFTPAVKGAVGPTPEEEERNPRARSAKLRAG 317 Query: 315 MRTVERSIEDD-SFVHLPRLPTLSQF 339 +RT +EDD S LP+LP ++ Sbjct: 318 IRTENPPLEDDLSLFGLPKLPETNEL 343 >gi|256113992|ref|ZP_05454775.1| S-adenosyl-methyltransferase MraW [Brucella melitensis bv. 3 str. Ether] gi|265995335|ref|ZP_06107892.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella melitensis bv. 3 str. Ether] gi|262766448|gb|EEZ12237.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella melitensis bv. 3 str. Ether] Length = 346 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 167/326 (51%), Positives = 217/326 (66%), Gaps = 6/326 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 HVPVL+ +VI L PAPG VI+D TFGAGGY+R + G++VIA+DRDP A+ G+ + Sbjct: 18 HVPVLIAEVIDALKPAPGAVIVDGTFGAGGYTRRILETGADVIAIDRDPTAIEAGRAMEK 77 Query: 80 DYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++ + +L ++ FS L + V VDGVV D+GVSSMQID +RGFSFQK GPLD Sbjct: 78 EFPGRLNLVESRFSALDEAVARMSGAGKKVDGVVLDIGVSSMQIDEAERGFSFQKDGPLD 137 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRMS G SA+D VN+ DL RI LGEE+ A RIA I KRR + PF T DL++ Sbjct: 138 MRMSSRGPSAADAVNRLKTGDLARIFNFLGEERHAGRIARMIEKRRAAKPFTRTLDLANA 197 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 I+ V + +RIHPATR FQALR++VN+E+ ELA+ L +AE+ LK GG L+VV+FHSLE Sbjct: 198 IETLVGRNPKDRIHPATRVFQALRVYVNDELGELARALLAAERILKPGGRLVVVTFHSLE 257 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 DR+VK+FFA R+G RHM ++ F K V PT E+ N R+RSAKLRAG Sbjct: 258 DRMVKRFFADRAGGSAGSRHMPETHMRLPSFTPAVKGAVGPTPEEEERNPRARSAKLRAG 317 Query: 315 MRTVERSIEDD-SFVHLPRLPTLSQF 339 +RT +EDD S LP+LP ++ Sbjct: 318 IRTENAPLEDDLSLFGLPKLPETNEL 343 >gi|312128123|ref|YP_003992997.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor hydrothermalis 108] gi|311778142|gb|ADQ07628.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor hydrothermalis 108] Length = 307 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 129/309 (41%), Positives = 191/309 (61%), Gaps = 10/309 (3%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSC 73 + +H+PVLLE+ ++ L P + +DATFG GG+S+ + SN ++A+D+D A+ Sbjct: 1 MFEHIPVLLEESVSFLITNPDGIYVDATFGLGGHSKRILEKLSNKGFLVAIDKDLEAIEL 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130 G+ + YK + ++FS++ + + G+ DG++FD GVSS+Q+D +RGFS+ K Sbjct: 61 GKRRLEAYK-NIKIVHSSFSKVDEVLESLGIAKIDGILFDFGVSSLQLDKQERGFSYSKE 119 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM S ++A DVVN + +DL RI+ GEE+ A RIA AIV+RR P +TT Sbjct: 120 AFLDMRMDTTSKLTAYDVVNFYSQEDLERIIREYGEERFARRIAKAIVERRSKKPIETTT 179 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 DLSSLI V K+ HPA R+FQA+RI VN E+EE+ L + LK+GG + +S Sbjct: 180 DLSSLISSLVPKPKDGS-HPAQRTFQAIRIEVNRELEEIKVALEKSLGFLKSGGRICAIS 238 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK+FF S + + + + + ITKK +VP++E++ NRRS S Sbjct: 239 FHSLEDRIVKEFFKFHSLECICPKDIPVCRCGKKKQLEIITKKPIVPSKEEIERNRRSHS 298 Query: 309 AKLRAGMRT 317 AKLR + Sbjct: 299 AKLRVAQKV 307 >gi|313632482|gb|EFR99498.1| S-adenosyl-methyltransferase MraW [Listeria seeligeri FSL N1-067] Length = 312 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 102/311 (32%), Positives = 174/311 (55%), Gaps = 9/311 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H VLL + + +L P + +DAT G G+S ++ A D+D A+ Sbjct: 1 MFKHETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + Y ++ + ++ F +++ + ++G VDG+++DLGVSS Q+D +RGFS+ + Sbjct: 61 AKIKLAAYSDKVTFVKSNFRYMKEALNERGISEVDGILYDLGVSSPQLDERERGFSYHQD 120 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM ++A VVN+ + +DL RI GEEK + +IA I +RR+ P +TT Sbjct: 121 AALDMRMDREQELTAKIVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTG 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I+ + ++ HP R+FQA+RI VN+E+ + L A +K GG + V+ Sbjct: 181 ELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLIKPGGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F + G + + + + F+ T+K +VP++E++ N R+R Sbjct: 241 TFHSLEDRITKHLFQEATKGPDLPPGLPVIPDEYKPDFKLATRKPIVPSEEELEQNNRAR 300 Query: 308 SAKLRAGMRTV 318 SAKLR + + Sbjct: 301 SAKLRVIEKII 311 >gi|254993138|ref|ZP_05275328.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL J2-064] Length = 308 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 104/306 (33%), Positives = 173/306 (56%), Gaps = 9/306 (2%) Query: 22 PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETM 78 VLL + + +L P + +DAT G G+S ++ A D+D A+ + + Sbjct: 2 TVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDNAKIKL 61 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 DY ++ + +A F +++ + ++G VDG+++DLGVSS Q+D +RGFS+ + LDM Sbjct: 62 ADYSDKVTFIKANFRDMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQDAALDM 121 Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM ++A VVN+ + +DL RI GEEK + +IA I +RR+ P +TT +L + Sbjct: 122 RMDQEQELTAKIVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTGELVDI 181 Query: 195 IQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 I+ + ++ HP R+FQA+RI VN+E+ + L A LK GG + V++FHSL Sbjct: 182 IKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLLKPGGRISVITFHSL 241 Query: 254 EDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 EDR+ K F + G + + + + F+ T+K +VP++E++ N R+RSAKLR Sbjct: 242 EDRITKHLFQEATKGPDLPPGLPVIPDEYKPDFKLATRKPIVPSEEELEQNNRARSAKLR 301 Query: 313 AGMRTV 318 + + Sbjct: 302 VIEKII 307 >gi|270307713|ref|YP_003329771.1| S-adenosyl-methyltransferase [Dehalococcoides sp. VS] gi|270153605|gb|ACZ61443.1| S-adenosyl-methyltransferase [Dehalococcoides sp. VS] Length = 349 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 122/313 (38%), Positives = 185/313 (59%), Gaps = 12/313 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72 T H+PV+LE+ I L PG +D T GAGG+S + + G ++++D DP A++ Sbjct: 2 TEYPHIPVMLEESIQGLGVIPGGRYVDCTLGAGGHSEAILEHSYPGGQLLSIDADPKAIA 61 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 E ++ + L F+ L+D V G++FDLG+SSMQ+D + GFSFQ Sbjct: 62 LAAERLKGFGSSVLLVNDNFANLKDICQRYEYMPVHGILFDLGLSSMQLDREESGFSFQT 121 Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMR S +SA+D+VN + L+ ++ GEE + RIA AI+++R PF+TT Sbjct: 122 EAPLDMRFSPGQELSAADIVNTYGLAGLSDLIWKYGEEPFSRRIARAILEKR---PFKTT 178 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+S+I+K V ++ RIHPATR+FQALRI VN E+ L L A+ L GG L+V+ Sbjct: 179 TELASVIEKAV-GGRHGRIHPATRTFQALRIAVNEELSHLESALAQAQSLLGHGGRLVVI 237 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 S+HSLEDR+VK++F + + + H + I ++V+ P+ E+++ N RSR Sbjct: 238 SYHSLEDRIVKQYFQREAKGCICPDDIPQCVCDHQPSLRIINRRVITPSDEEISRNPRSR 297 Query: 308 SAKLRAGMRTVER 320 SAK+R R +E Sbjct: 298 SAKMRVAERIIEP 310 >gi|291547133|emb|CBL20241.1| S-adenosyl-methyltransferase MraW [Ruminococcus sp. SR1/5] Length = 311 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 104/307 (33%), Positives = 162/307 (52%), Gaps = 10/307 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H VLL + I L P + +D T G G++ CK I +D+D A+ Sbjct: 4 KHKSVLLNETIDGLRVKPDGIYVDGTLGGAGHATEVCKKLSAKGRFIGIDQDQDAIIAAS 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + + Q ++ ++ + + D + +G VDG++ DLGVSS Q+D +RGFS++ P Sbjct: 64 ERLSAF-NQVTIIRSNYCYMADELRSRGIEKVDGILLDLGVSSYQLDNEERGFSYRYDSP 122 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM +A D+VN ++L RI+ GE+K A IA IV R+ AP +TT +L Sbjct: 123 LDMRMDRRQSRTAGDIVNGYEERELYRIIRDYGEDKFAKNIAKHIVAAREQAPIRTTGEL 182 Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 + +I+ + + HPA R+FQA+RI +N E++ L L L GG + +++F Sbjct: 183 TEIIRGAIPMKIQATGGHPAKRTFQAIRIELNRELDVLRDSLDGMIDLLDDGGRICIITF 242 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK F + + + IT+K ++P +E++ N RS+SA Sbjct: 243 HSLEDRIVKTIFRKNENPCTCPPDFPVCVCGKKSKGKVITRKPILPGKEEMEENPRSKSA 302 Query: 310 KLRAGMR 316 KLR R Sbjct: 303 KLRIFER 309 >gi|308069889|ref|YP_003871494.1| S-adenosyl-methyltransferase mraW [Paenibacillus polymyxa E681] gi|305859168|gb|ADM70956.1| S-adenosyl-methyltransferase mraW [Paenibacillus polymyxa E681] Length = 316 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 109/315 (34%), Positives = 173/315 (54%), Gaps = 15/315 (4%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSC 73 + H+ VL E+ LN + +D T G G+S +IA D+D +A++ Sbjct: 1 MFHHITVLKEEATQALNIRQDGIYVDCTLGGAGHSSVIASQLGPEGRLIAFDQDDWALNN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---------VDGVVFDLGVSSMQIDCGDRG 124 +E + Y+ + SL ++ F LQD + + G V G++FDLGVSS Q D G+RG Sbjct: 61 AREKLSAYEGKISLVKSNFRHLQDKLTELGLPEKDGVPQVQGILFDLGVSSPQFDEGERG 120 Query: 125 FSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 FS+ PLDMRM S ++A ++VN+ + ++ RIL GEEK + RIA +++RR + Sbjct: 121 FSYNHDAPLDMRMDQSSSLTAYEIVNEWSEAEIARILFHYGEEKFSRRIAKIMIERRLNK 180 Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 P TT +L +I++ + + + HPA RSFQALRI VN+E+ L L A + L G Sbjct: 181 PIHTTGELVDIIKEGIPAAARRTGGHPAKRSFQALRIAVNDELGALEDSLHQAIRCLAPG 240 Query: 243 GLLIVVSFHSLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 G + V++FHSLEDR+ K F + + I + + + +K ++ +++++ Sbjct: 241 GRISVITFHSLEDRICKHIFKEYLAKSIYPSDLPILEDKMEGDLKLVNRKPIMASEQELE 300 Query: 302 FNRRSRSAKLRAGMR 316 N RSRSAKLR + Sbjct: 301 LNPRSRSAKLRVAEK 315 >gi|146319398|ref|YP_001199110.1| S-adenosyl-methyltransferase MraW [Streptococcus suis 05ZYH33] gi|146321602|ref|YP_001201313.1| S-adenosyl-methyltransferase MraW [Streptococcus suis 98HAH33] gi|145690204|gb|ABP90710.1| Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Streptococcus suis 05ZYH33] gi|145692408|gb|ABP92913.1| Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Streptococcus suis 98HAH33] gi|292559026|gb|ADE32027.1| methyltransferase [Streptococcus suis GZ1] Length = 323 Score = 384 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 107/323 (33%), Positives = 171/323 (52%), Gaps = 15/323 (4%) Query: 5 SCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNV 61 + K M+ +H VLL + + +L+ P + +DAT G G+S G ++ Sbjct: 4 NGKDMTKEF-----NHTTVLLHETVDMLDIKPNGIYVDATLGGAGHSEYLLSQLTDGGHL 58 Query: 62 IALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSM 116 A D+D A+ + Y K Q + + F L+ + + GV DG+ +DLGVSS Sbjct: 59 YAFDQDQTAIDHAHIRLASYIEKGQVTFIRDNFRNLKTRLAELGVTEIDGICYDLGVSSP 118 Query: 117 QIDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175 Q+D +RGFS+++ PLDMRM+ G ++A DVVN + DL RI GE+K + +IA Sbjct: 119 QLDERERGFSYKQDAPLDMRMNREGHLTAYDVVNNYDYHDLVRIFFKYGEDKFSKQIARK 178 Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRS 234 I + R P +TT +L+ LI+ + + HPA + FQA+RI VN+E+ + ++ Sbjct: 179 IEQARAVKPIETTTELAELIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQ 238 Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVV 294 A L G + V++FHSLEDRL K+ F S + + A + + +K ++ Sbjct: 239 AIDLLALDGRISVITFHSLEDRLTKQLFKEASTIDVPKGLPFIPDDLKAPLELVNRKPIL 298 Query: 295 PTQEDVAFNRRSRSAKLRAGMRT 317 P+QE++ N R+ SAKLR + Sbjct: 299 PSQEELEANNRAHSAKLRVAKKV 321 >gi|55821677|ref|YP_140119.1| S-adenosyl-methyltransferase MraW [Streptococcus thermophilus LMG 18311] gi|55737662|gb|AAV61304.1| S-adenosylmethionine-dependent methyltransferase, putative [Streptococcus thermophilus LMG 18311] Length = 354 Score = 384 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 110/324 (33%), Positives = 173/324 (53%), Gaps = 17/324 (5%) Query: 6 CKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVI 62 K M++ H HV VLL + + +L+ P + +DAT G G+S ++ Sbjct: 36 IKIMTNEFH-----HVTVLLHETVDMLDIKPDGIYVDATLGGAGHSSYLLSQLSEKGHLY 90 Query: 63 ALDRDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQ 117 D+D A+ Q ++DY ++ + + F L+ + GV DG+++DLGVSS Q Sbjct: 91 CFDQDQKAIDNAQVRLKDYIDKGMVTFIKDNFRNLKSNLEALGVSEIDGILYDLGVSSPQ 150 Query: 118 IDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 +D +RGFS+++ LDMRM+ ++A DVVN DL RI GE+K + +IA I Sbjct: 151 LDERERGFSYKQDAKLDMRMNEEASLTAYDVVNTYPYNDLVRIFFKYGEDKFSKQIARKI 210 Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 + RQ P +TT +L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A Sbjct: 211 EQARQVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQEA 270 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVV 294 L G + V++FHSLEDRL K+ F S V IP + P V + +K ++ Sbjct: 271 LDLLAVNGRISVITFHSLEDRLTKQLFKEASTADVPKGLPFIPEDLQPKV-ALVNRKPIL 329 Query: 295 PTQEDVAFNRRSRSAKLRAGMRTV 318 P+QE++ N RS SAKLR + Sbjct: 330 PSQEELEANNRSHSAKLRVAKKIR 353 >gi|322386906|ref|ZP_08060530.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus cristatus ATCC 51100] gi|321269188|gb|EFX52124.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus cristatus ATCC 51100] Length = 316 Score = 384 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 103/321 (32%), Positives = 170/321 (52%), Gaps = 15/321 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 M+ H H+ VLL + I L+ + +DAT G G+S ++ A D Sbjct: 1 MTKEFH-----HITVLLHETIDQLDVRSDGIYVDATLGGAGHSEYLLSKLGDKGHLYAFD 55 Query: 66 RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120 +D A+ ++ + Y E+ + + F L+ + + GV DG+ +DLGVSS Q+D Sbjct: 56 QDQTAIDNAKKRLAPYIERGMVTFIKDNFRNLKTRLNEVGVEKIDGICYDLGVSSPQLDE 115 Query: 121 GDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS+++ PLDMRM+ ++A VVNQ DL RI GE+K + +IA I + Sbjct: 116 RERGFSYKQDAPLDMRMNQEAALTAYQVVNQYPYNDLVRIFFKYGEDKFSKQIARKIEQA 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R+ P +TT +L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A Sbjct: 176 REIKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDL 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L GG + V++FHSLEDRL K+ F S + + + +++K ++P++E Sbjct: 236 LAVGGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPDDLQPKLELVSRKPILPSKE 295 Query: 299 DVAFNRRSRSAKLRAGMRTVE 319 ++ N R+ SAKLR + E Sbjct: 296 ELEANNRAHSAKLRVARKVHE 316 >gi|312876343|ref|ZP_07736328.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor lactoaceticus 6A] gi|311796837|gb|EFR13181.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor lactoaceticus 6A] Length = 307 Score = 384 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 126/309 (40%), Positives = 193/309 (62%), Gaps = 10/309 (3%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSC 73 + +H+PVLLE+ ++ L P + +DATFG GG+S+ + SN ++A+D+D A+ Sbjct: 1 MFEHIPVLLEESVSFLITNPDGIYVDATFGLGGHSKRILEKLSNKGFLVAIDKDLEAIEL 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130 G+ + YK + ++FS++ + + G+ DG++FD GVSS+Q+D +RGFS+ K Sbjct: 61 GKRRLEGYK-NIKIVHSSFSKVDEVLESLGIEKIDGILFDFGVSSLQLDKQERGFSYSKE 119 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM S ++A DV+N + +DL RI+ GEE+ A RIA AIV+RR++ P +TT Sbjct: 120 AFLDMRMDTTSKLTAYDVINFYSQEDLERIIREYGEERFARRIAKAIVERRRNKPIETTT 179 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 +LSSLI V K+ HPA R+FQA+RI VN E+EE+ L + + LK+GG + +S Sbjct: 180 ELSSLISSVVPKPKDGS-HPAQRTFQAIRIEVNRELEEIKIALEKSLRFLKSGGRICAIS 238 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK FF S + + + + + ITKK +VP++E++ N+RS S Sbjct: 239 FHSLEDRIVKGFFKFHSLECICPKDIPVCRCGKKKELEIITKKPIVPSKEEIERNKRSHS 298 Query: 309 AKLRAGMRT 317 AKLR + Sbjct: 299 AKLRVAQKV 307 >gi|121535927|ref|ZP_01667723.1| S-adenosyl-methyltransferase MraW [Thermosinus carboxydivorans Nor1] gi|121305498|gb|EAX46444.1| S-adenosyl-methyltransferase MraW [Thermosinus carboxydivorans Nor1] Length = 313 Score = 384 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 119/307 (38%), Positives = 168/307 (54%), Gaps = 8/307 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQ 75 H VLLE+ +A L P + +D T G GG+S +I +D+DP A++ GQ Sbjct: 7 HHKTVLLEESVAALVTNPAGIYVDCTLGGGGHSALIASRLSPEGWLIGIDQDPAAIAAGQ 66 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + L + FS L + G VDGV+FDLGVSS Q+D RGFS+ + P Sbjct: 67 ARLAGASCRIDLVRDNFSNLSRILTTLGIESVDGVLFDLGVSSHQLDVAQRGFSYMQDAP 126 Query: 133 LDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S SA DVVN + DLTRI+ GEE+ A RIA IV+ R +AP TT L Sbjct: 127 LDMRMDPSAPISAYDVVNTYSEDDLTRIIRDYGEERWARRIAQFIVQARMTAPICTTGQL 186 Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 + +I++ + + + + HPA R+FQA+RI VNNE+ L +A + LK GG + +++F Sbjct: 187 TDIIKRAIPAAARRDGPHPAKRTFQAIRIEVNNELSILQDAFITAVQFLKCGGRICIITF 246 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDR+ K S + + + H I K + PT E++ N R+RSAK Sbjct: 247 HSLEDRIAKHTLQSLAKGCVCPPQLPICVCHNKPKLKILGKPITPTAEELDDNHRARSAK 306 Query: 311 LRAGMRT 317 LR + Sbjct: 307 LRVAEKV 313 >gi|147678204|ref|YP_001212419.1| S-adenosyl-methyltransferase MraW [Pelotomaculum thermopropionicum SI] gi|262824781|sp|A5D113|RSMH_PELTS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|146274301|dbj|BAF60050.1| predicted S-adenosylmethionine-dependent methyltransferase [Pelotomaculum thermopropionicum SI] Length = 311 Score = 384 bits (987), Expect = e-105, Method: Composition-based stats. Identities = 116/306 (37%), Positives = 175/306 (57%), Gaps = 9/306 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H PV+L++V+ LN PG V +D T G G+ + K +I +DRDP A++ + Sbjct: 5 HRPVMLDEVLEGLNLKPGGVYVDCTVGGAGHGEAILKRTGAEGRLIGIDRDPEALAAAER 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + Y ++ L +A F + + GVDG++FDLGVSS Q+D RGFS+++ L Sbjct: 65 RLVPYGKRVDLVRANFEDIGKVLERLGQTGVDGILFDLGVSSYQLDNPARGFSYKRDSLL 124 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM G SA ++VN ++L RI+ GEE+ A RIA IV+ R+ +P +TT L+ Sbjct: 125 DMRMDPERGPSARELVNTLTAEELARIIKDYGEERWAFRIAAFIVEERKRSPIETTGRLA 184 Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+K + ++ HPA R+FQALRI VN E+E L LRSA + L+ GG + V+++H Sbjct: 185 EIIKKAIPAGARREGPHPARRTFQALRIAVNRELEVLGGALRSAVRVLRPGGRICVITYH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK+ F + + + +T + VVP+ +V N R+RSAK Sbjct: 245 SLEDRIVKETFRRLASPCTCPKEFPACVCGGKKEIKIVTARPVVPSAGEVEENPRARSAK 304 Query: 311 LRAGMR 316 LR + Sbjct: 305 LRIAEK 310 >gi|253580157|ref|ZP_04857424.1| MraW methylase MraW [Ruminococcus sp. 5_1_39B_FAA] gi|251848676|gb|EES76639.1| MraW methylase MraW [Ruminococcus sp. 5_1_39BFAA] Length = 311 Score = 384 bits (987), Expect = e-105, Method: Composition-based stats. Identities = 105/309 (33%), Positives = 164/309 (53%), Gaps = 10/309 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H VLLE+ I L+ P + +D T G G++ C+ I +D+D A+ Sbjct: 4 KHKSVLLEETIEGLDIKPDGIYVDGTLGGAGHAGEVCRKLSAKGRFIGIDQDQDAIIAAS 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + YK Q ++ ++ + + + +G VDG++ DLGVSS Q+D +RGF+++ P Sbjct: 64 ERLAPYK-QATIIRSNYCYMVQELAARGIYKVDGILLDLGVSSYQLDNEERGFTYRVDAP 122 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM +A D+VN K+L RI+ GE+K A IA IV RQ P TT +L Sbjct: 123 LDMRMDQRQTQTAGDIVNGYEEKELYRIIRDYGEDKFAKNIAKHIVAARQVKPITTTGEL 182 Query: 192 SSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 + +I++++ + HPA R+FQA+RI +N E++ L L L GG L +++F Sbjct: 183 TEIIRESIPMKMQVKSGHPAKRTFQAIRIELNRELDVLRDSLDGMIDILDDGGRLCIITF 242 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK F + + + IT+K ++P + ++ N RS+SA Sbjct: 243 HSLEDRIVKTIFRKNENPCTCPSDFPVCVCGKKSKGKVITRKPILPGETEMEENPRSKSA 302 Query: 310 KLRAGMRTV 318 KLR R + Sbjct: 303 KLRIFERVL 311 >gi|55823597|ref|YP_142038.1| S-adenosyl-methyltransferase MraW [Streptococcus thermophilus CNRZ1066] gi|55739582|gb|AAV63223.1| S-adenosylmethionine-dependent methyltransferase, putative [Streptococcus thermophilus CNRZ1066] Length = 354 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 110/324 (33%), Positives = 173/324 (53%), Gaps = 17/324 (5%) Query: 6 CKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVI 62 K M++ H HV VLL + + +L+ P + +DAT G G+S ++ Sbjct: 36 IKIMTNEFH-----HVTVLLHETVDMLDIKPDGIYVDATLGGAGHSSYLLSQLSEKGHLY 90 Query: 63 ALDRDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQ 117 D+D A+ Q ++DY ++ + + F L+ + GV DG+++DLGVSS Q Sbjct: 91 CFDQDQKAIDNAQVRLKDYIDKGMVTFIKDNFRNLKSNLEALGVSEIDGILYDLGVSSPQ 150 Query: 118 IDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 +D +RGFS+++ LDMRM+ ++A DVVN DL RI GE+K + +IA I Sbjct: 151 LDERERGFSYKQDAKLDMRMNEEASLTAYDVVNTYPYNDLVRIFFKYGEDKFSKQIARKI 210 Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 + RQ P +TT +L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A Sbjct: 211 EQARQVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQEA 270 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVV 294 L G + V++FHSLEDRL K+ F S V IP + P V + +K ++ Sbjct: 271 LDLLAVDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPEDLQPKV-ALVNRKPIL 329 Query: 295 PTQEDVAFNRRSRSAKLRAGMRTV 318 P+QE++ N RS SAKLR + Sbjct: 330 PSQEELEANNRSHSAKLRVAKKIR 353 >gi|160915591|ref|ZP_02077802.1| hypothetical protein EUBDOL_01601 [Eubacterium dolichum DSM 3991] gi|158432711|gb|EDP11000.1| hypothetical protein EUBDOL_01601 [Eubacterium dolichum DSM 3991] Length = 311 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 115/310 (37%), Positives = 172/310 (55%), Gaps = 9/310 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74 + H VLL + + L + +D T G GG+S + ++ A DRD A+ Sbjct: 1 MSKHYSVLLSECLEGLAIRADGIYVDGTLGRGGHSAQILQRIPKGHLYAFDRDETAIKES 60 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +E + F+L FS L++ + ++G+ DG++ DLGVSS Q D G+RGFS++ Sbjct: 61 KERLLSIASNFTLIHNQFSMLKEELSNRGIYQIDGMLLDLGVSSPQFDDGERGFSYRYDA 120 Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S +A DVVN + +L RI GEEK A +IA I K+R P TT + Sbjct: 121 PLDMRMDQSQQKNAYDVVNSYDYHELVRIFYQYGEEKFAKQIAKNIEKQRAIKPIATTFE 180 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I+ ++ N + HPA + FQA+RI VN+E++E+ L+ A L GG L V+S Sbjct: 181 LVEVIKASLPAKVLNKKGHPAKKVFQAIRIEVNDELKEIETVLQDAMDMLAVGGRLCVIS 240 Query: 250 FHSLEDRLVKKFFASRS--GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 F SLEDR+VK+ F RS KV M+P + ++ + +K ++ ++E++ N RS Sbjct: 241 FQSLEDRIVKEAFHERSTPKKVDKRIPMLPQDIETVDYRLVNRKPIIASEEELEENNRSH 300 Query: 308 SAKLRAGMRT 317 SAKLR R Sbjct: 301 SAKLRIIERV 310 >gi|148559451|ref|YP_001259332.1| S-adenosyl-methyltransferase MraW [Brucella ovis ATCC 25840] gi|263446879|sp|A5VRI5|RSMH_BRUO2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|148370708|gb|ABQ60687.1| S-adenosyl-methyltransferase MraW [Brucella ovis ATCC 25840] Length = 346 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 167/326 (51%), Positives = 217/326 (66%), Gaps = 6/326 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 HVPVL+ +VI L PAPG VI+D TFGAGGY+R + G++VIA+DRDP A+ G+ + Sbjct: 18 HVPVLIAEVIDALKPAPGAVIVDGTFGAGGYTRRILETGADVIAIDRDPTAIEAGRAMEK 77 Query: 80 DYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++ + +L ++ FS L + V VDGVV D+GVSSMQID +RGFSFQK GPLD Sbjct: 78 EFPGRLNLVESRFSALDEAVARMSGAGKKVDGVVLDIGVSSMQIDEAERGFSFQKDGPLD 137 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRMS G SA+D VN+ DL RI LGEE+ A RIA I KRR + PF T DL++ Sbjct: 138 MRMSSRGSSAADAVNRLKTGDLARIFNFLGEERHAGRIARMIEKRRAAKPFTRTLDLANA 197 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 I+ V + +RIHPATR FQALR++VN+E+ ELA+ L +AE+ LK GG L+VV+FHSLE Sbjct: 198 IETLVGRNPKDRIHPATRVFQALRVYVNDELGELARALLAAERILKPGGRLVVVTFHSLE 257 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 DR+VK+FFA R+G RHM ++ F K V PT E+ N R+RSAKLRAG Sbjct: 258 DRMVKRFFADRAGGSAGSRHMPETHMRLPSFTPAVKGAVGPTPEEEERNPRARSAKLRAG 317 Query: 315 MRTVERSIEDD-SFVHLPRLPTLSQF 339 +RT +EDD S LP+LP ++ Sbjct: 318 IRTENSPLEDDLSLFGLPKLPETNEL 343 >gi|227889751|ref|ZP_04007556.1| S-adenosyl-methyltransferase [Lactobacillus johnsonii ATCC 33200] gi|227849615|gb|EEJ59701.1| S-adenosyl-methyltransferase [Lactobacillus johnsonii ATCC 33200] Length = 322 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 111/321 (34%), Positives = 173/321 (53%), Gaps = 13/321 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDR 66 M+S+ H VLL + I LNP G + +DATFG GG++R VI D+ Sbjct: 1 MTSSYKIMKFKHKSVLLHETIDNLNPKDGGLYVDATFGGGGHARYLLSKLNKGTVIGFDQ 60 Query: 67 DPFAVSCGQETMRD-----YKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQ 117 D +A+S +E+ + + L F L++ + + G+DG+ +DLGVSS Q Sbjct: 61 DEYAISMAKESFAKELQVGAEPRLILVHDNFCHLKENLVELGISDGIDGIYYDLGVSSPQ 120 Query: 118 IDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 D +RGFS++ LDMRM S + A +VN + K+L+ +L G+EK + +IA I Sbjct: 121 FDQPERGFSYRFDARLDMRMDQSQELDAYTIVNTWSQKELSDVLYKYGDEKFSRQIARKI 180 Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 V RR+ P TT DL +I+ + ++ + HPA +SFQA+R+ VNNE+ L + L A Sbjct: 181 VDRRKEKPIVTTFDLVDVIKDAIPAYARRSGGHPAKKSFQAIRVAVNNELGVLQESLEEA 240 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295 K LK GG + V++F S ED++VKK F S + + + I++K ++ Sbjct: 241 IKLLKPGGRISVITFQSHEDKIVKKIFKKYSEVEIPRGMPMVPADSKPTLRLISRKPIMA 300 Query: 296 TQEDVAFNRRSRSAKLRAGMR 316 + +++ N RS SAKLR + Sbjct: 301 SSDELEENNRSHSAKLRVAEK 321 >gi|229822998|ref|ZP_04449068.1| hypothetical protein GCWU000282_00291 [Catonella morbi ATCC 51271] gi|229787811|gb|EEP23925.1| hypothetical protein GCWU000282_00291 [Catonella morbi ATCC 51271] Length = 314 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 113/310 (36%), Positives = 169/310 (54%), Gaps = 11/310 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H VLL + + L+ P V +D T G G+++ ++ A D+D A++ + Sbjct: 4 KHETVLLHETVDGLDIKPDGVYVDCTLGGAGHAQYLLGQLGPQGHLYAFDQDMTAINNAK 63 Query: 76 ETMRDY--KEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + DY K Q + F L+ + + G VDG+ +DLGVSS Q+D +RGFS+ + Sbjct: 64 LKLADYVEKGQVTFIHQNFRHLKQALEELGISQVDGIYYDLGVSSPQLDVAERGFSYGQE 123 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM+ +SA +VVN+ +DL IL GEEK A RIA AI +RR P +TT Sbjct: 124 ARLDMRMNQEQALSAYEVVNEWPYEDLVHILYRYGEEKFAKRIARAIEERRAQRPIETTT 183 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ +++ + + + HPA RSFQA+RI VN+E+ + L A LK G + V+ Sbjct: 184 ELAEIVKMAIPAATRRTGGHPAKRSFQAIRIAVNDELGAVEDSLEQALTLLKPEGRVSVI 243 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRLVK+ F S + R + A F + +K +V + E++ N RSR Sbjct: 244 TFHSLEDRLVKQLFKEVSQEPEVPRGLPVLPGQMQAPFTLVNRKPIVASPEELEANNRSR 303 Query: 308 SAKLRAGMRT 317 SAKLR + Sbjct: 304 SAKLRILRKN 313 >gi|329667562|gb|AEB93510.1| S-adenosyl-methyltransferase MraW [Lactobacillus johnsonii DPC 6026] Length = 322 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 111/321 (34%), Positives = 173/321 (53%), Gaps = 13/321 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDR 66 M+S+ H VLL + I LNP G + +DATFG GG++R VI D+ Sbjct: 1 MTSSYKIMKFKHKSVLLHETIDNLNPKDGGLYVDATFGGGGHARYLLSKLNKGTVIGFDQ 60 Query: 67 DPFAVSCGQETMRD-----YKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQ 117 D +A+S +E+ + + L F L++ + + G+DG+ +DLGVSS Q Sbjct: 61 DEYAISMAKESFAKELQVGAEPRLMLVHDNFCHLKENLVELGISDGIDGIYYDLGVSSPQ 120 Query: 118 IDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 D +RGFS++ LDMRM S + A +VN + K+L+ +L G+EK + +IA I Sbjct: 121 FDQPERGFSYRFDARLDMRMDQSQELDAYTIVNTWSQKELSDVLYKYGDEKFSRQIARKI 180 Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 V RR+ P TT DL +I+ + ++ + HPA +SFQA+R+ VNNE+ L + L A Sbjct: 181 VDRRKEKPIVTTFDLVDVIKDAIPAYARRSGGHPAKKSFQAIRVAVNNELGVLQESLEEA 240 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295 K LK GG + V++F S ED++VKK F S + + + I++K ++ Sbjct: 241 IKLLKPGGRISVITFQSHEDKIVKKIFKKYSEVKIPRGMPMVPADSKPTLRLISRKPIMA 300 Query: 296 TQEDVAFNRRSRSAKLRAGMR 316 + +++ N RS SAKLR + Sbjct: 301 SSDELEENNRSHSAKLRVAEK 321 >gi|242278175|ref|YP_002990304.1| S-adenosyl-methyltransferase MraW [Desulfovibrio salexigens DSM 2638] gi|263446206|sp|C6BYH4|RSMH_DESAD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|242121069|gb|ACS78765.1| S-adenosyl-methyltransferase MraW [Desulfovibrio salexigens DSM 2638] Length = 324 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 128/311 (41%), Positives = 178/311 (57%), Gaps = 11/311 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQE 76 H VLL +VI L P PG LD T G G+S + K G+ + LDRD A+ E Sbjct: 12 HTSVLLNEVIEWLAPKPGGRYLDGTLGMAGHSSAILKIAGEGAELAGLDRDEQALELAGE 71 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + ++ F FS+ + + + G VDGVV DLGVSS+ +D +RGFSF K GPL Sbjct: 72 RLAPFGDRAHRFHLAFSKFEAALDELGWDTVDGVVLDLGVSSLHLDHAERGFSFIKDGPL 131 Query: 134 DMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 DMRM +G AS +VN+ + DL RIL + GEE AS+I AI+ R+ TT L Sbjct: 132 DMRMDPAGGMPPASSIVNKGSYSDLNRILKLYGEEPLASKITKAIIAAREEEKITTTLQL 191 Query: 192 SSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 +S+++K + +R HPAT++FQ LRI VN+E+EEL L + L G + ++S Sbjct: 192 ASIVEKAYPAKRRALSRTHPATKTFQGLRIAVNSELEELKTFLDRIPERLSPGARVAIIS 251 Query: 250 FHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VKK F ++S I + + +T+K V+PT+E++ N RSRS Sbjct: 252 FHSLEDRIVKKTFKAQSQSCDCPPMQPICTCGKVKLMNVLTRKPVLPTEEEMKVNTRSRS 311 Query: 309 AKLRAGMRTVE 319 AKLR RT E Sbjct: 312 AKLRVAERTGE 322 >gi|313888490|ref|ZP_07822157.1| S-adenosyl-methyltransferase MraW [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845519|gb|EFR32913.1| S-adenosyl-methyltransferase MraW [Peptoniphilus harei ACS-146-V-Sch2b] Length = 312 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 110/306 (35%), Positives = 167/306 (54%), Gaps = 10/306 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H VLL++ I LN GK+ LD T G G+SR K +I +D+D A+ +E Sbjct: 5 HKSVLLDETIEGLNIREGKIYLDGTLGGAGHSREILKKLKGTGLLIGIDQDIEALEVAKE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + +YK F + + + + G+D GV+ D+GVSS Q D +RGFS++ PL Sbjct: 65 RLSNYK-NVEFFNLNYINFEKALDELGIDKIDGVLLDIGVSSYQFDNPERGFSYRFDAPL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM ISA D+VN + ++TRI+ GEEK A+RIA IV R++ +TT +L Sbjct: 124 DMRMDQELEISARDIVNTYSESEITRIIKEYGEEKWAARIAKFIVDERKTKNIETTFELV 183 Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + ++ N HPA R+FQALRI VN E++ L + L GG + +++FH Sbjct: 184 EIIKNAIPASARRNGPHPAKRTFQALRIEVNRELDVLEDSIERFVHRLNPGGRIAIITFH 243 Query: 252 SLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK F + I + + +T+K + ++E++ N+RS SAK Sbjct: 244 SLEDRIVKNAFKYLEKDCICPPSSPICTCDKKKEIKILTRKPITASEEELKENKRSHSAK 303 Query: 311 LRAGMR 316 LR + Sbjct: 304 LRIAEK 309 >gi|163790543|ref|ZP_02184972.1| S-adenosyl-methyltransferase MraW [Carnobacterium sp. AT7] gi|159874146|gb|EDP68221.1| S-adenosyl-methyltransferase MraW [Carnobacterium sp. AT7] Length = 318 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 107/312 (34%), Positives = 171/312 (54%), Gaps = 11/312 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 T +H VLL + + L+ +P + +D T G G+S ++ A D+D A+ Sbjct: 2 TAFNHETVLLRETVDGLSLSPEGIYVDCTLGGAGHSEYLLSQLNEKGHLYAFDQDDRALE 61 Query: 73 CGQETMRDYKEQ--FSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSF 127 + + +Y E+ + +A F ++D + + G VDG+++DLGVSS Q+D +RGFS+ Sbjct: 62 NAKIRLAEYVEKGMVTFIKANFRYIKDELANLGIKEVDGILYDLGVSSPQLDEAERGFSY 121 Query: 128 QKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + PLDMRM ++A +V+N+ + DL RI GEEK + +IA I R+ + Sbjct: 122 HQDAPLDMRMDTDAPLTAKEVINEWSYHDLIRIFYRYGEEKFSKQIARKIEAAREIKLIE 181 Query: 187 TTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT +L LI+ + ++ HPA R FQA+RI VN+E+ + L A + L GG + Sbjct: 182 TTSELVELIKAGIPAPARRKGGHPAKRVFQAVRIAVNDELSSVEDSLEQAIELLAIGGRI 241 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 V+SFHSLEDR+VK F S R + + + IT+K ++P+++++ N Sbjct: 242 SVISFHSLEDRIVKSIFKDHSKGPELPRGLPVVPDGFLPELKLITRKPILPSEQELEVNN 301 Query: 305 RSRSAKLRAGMR 316 RSRSAKLR + Sbjct: 302 RSRSAKLRIAEK 313 >gi|150016452|ref|YP_001308706.1| S-adenosyl-methyltransferase MraW [Clostridium beijerinckii NCIMB 8052] gi|263446053|sp|A6LTS0|RSMH_CLOB8 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|149902917|gb|ABR33750.1| S-adenosyl-methyltransferase MraW [Clostridium beijerinckii NCIMB 8052] Length = 310 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 107/307 (34%), Positives = 165/307 (53%), Gaps = 10/307 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 HV VLL + I LN + +D T G G+S S +I +D+D A+ + Sbjct: 4 KHVSVLLNECIEALNIKENGIYVDGTLGGAGHSSHILSNLSKDGMLIGIDQDQDALKAAK 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E ++D+ E + F + + D + VDG++ DLGVSS Q+D RGFS+ K P Sbjct: 64 EKLKDF-ENVKYVHSNFYNIDSILNDLDIEKVDGILMDLGVSSYQLDEASRGFSYMKDAP 122 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ + SA ++VN + L +I+ GEE+ A RIA+ I+ RR P +TT +L Sbjct: 123 LDMRMNRENDFSAYNIVNNYDEDSLYKIIKDYGEERFAKRIANFIINRRIEKPIETTFEL 182 Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+ + + HPA R+FQA+RI VN+E++ L + + L GG + +++F Sbjct: 183 VDIIKAAIPAKMRREGPHPAKRTFQAIRIEVNSELKILNKTIEDGVNRLNKGGRMAIITF 242 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK F + + + ++I KK + PT+E++ N RSRSA Sbjct: 243 HSLEDRIVKLKFRELENPCTCPKEFPMCICGKSPLVKNIAKKGIAPTKEEIEENPRSRSA 302 Query: 310 KLRAGMR 316 KLR + Sbjct: 303 KLRVIEK 309 >gi|329921076|ref|ZP_08277599.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners SPIN 1401G] gi|328934983|gb|EGG31472.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners SPIN 1401G] Length = 315 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 111/310 (35%), Positives = 171/310 (55%), Gaps = 13/310 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77 H VLL + I LN V +DATFG GG++ K ++I D+D +A+ +++ Sbjct: 5 HYSVLLHETIDNLNLKNDGVYVDATFGGGGHASYLLKQLSNGHLIGFDQDEYAIELAKKS 64 Query: 78 M-----RDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + K + SL F LQ + G+DG+ +DLGVSS Q D +RGFS++ Sbjct: 65 FSEVLKANSKPKLSLVHDNFGNLQQNLAKLGFIDGIDGIYYDLGVSSPQFDQPERGFSYR 124 Query: 129 KSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + LDMRM + + A +VN + K+L+ IL G+EK A +IA IV +R P T Sbjct: 125 FNARLDMRMDQTKDLDAYKIVNTWSQKELSNILFKYGDEKYARQIAKNIVAKRAIKPITT 184 Query: 188 TQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T +L +I++ + F++ HPA +SFQA+RI VN+E+E L + L A + LK GG + Sbjct: 185 TFELVDIIKEAIPAFARRTGGHPAKKSFQAIRIAVNDELEVLEKSLLEAIEILKPGGRIC 244 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V++F SLED++VKK F S + ++ + I++K +V T +++ N RS Sbjct: 245 VITFQSLEDKIVKKIFKKYSDVDIPRGMPQIPDSLKPTLKIISRKPIVATDKELEENNRS 304 Query: 307 RSAKLRAGMR 316 SAKLR + Sbjct: 305 HSAKLRVAEK 314 >gi|312871660|ref|ZP_07731752.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LEAF 3008A-a] gi|311092885|gb|EFQ51237.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LEAF 3008A-a] Length = 315 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 112/311 (36%), Positives = 171/311 (54%), Gaps = 13/311 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76 H VLL + I LN V +DATFG GG++ K ++I D+D +A+ ++ Sbjct: 4 KHYSVLLHETIDNLNLKNDGVYVDATFGGGGHASYLLKQLSNGHLIGFDQDEYAIELAKK 63 Query: 77 TM-----RDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSF 127 + + K Q SL F LQ + G+DG+ +DLGVSS Q D +RGFS+ Sbjct: 64 SFSEVLKANSKPQLSLVHDNFGNLQQNLAKLGFIDGIDGIYYDLGVSSPQFDQPERGFSY 123 Query: 128 QKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + + LDMRM + + A +VN + K+L+ IL G+EK A +IA IV +R P Sbjct: 124 RFNARLDMRMDQTKDLDAYKIVNTWSQKELSNILFKYGDEKYARQIAKNIVAKRAIKPIT 183 Query: 187 TTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT +L +I++ + F++ HPA +SFQA+RI VN+E+E L + L A + LK GG + Sbjct: 184 TTFELVDIIKEAIPAFARRTGGHPAKKSFQAIRIAVNDELEVLEKSLLEAIEILKPGGRI 243 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V++F SLED++VKK F S + ++ + I++K +V T +++ N R Sbjct: 244 CVITFQSLEDKIVKKIFKKYSDVDIPRGMPQVPDSLKPTLKIISRKPIVATNKELEENNR 303 Query: 306 SRSAKLRAGMR 316 S SAKLR + Sbjct: 304 SHSAKLRVAEK 314 >gi|309803099|ref|ZP_07697196.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LactinV 11V1-d] gi|308164607|gb|EFO66857.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LactinV 11V1-d] Length = 315 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 111/311 (35%), Positives = 171/311 (54%), Gaps = 13/311 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76 H VLL + I LN V +DATFG GG++ K ++I D+D +A+ ++ Sbjct: 4 KHYSVLLHETIDNLNLKNDGVYVDATFGGGGHASYLLKQLSNGHLIGFDQDEYAIELAKK 63 Query: 77 TM-----RDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSF 127 + + K + SL F LQ + G+DG+ +DLGVSS Q D +RGFS+ Sbjct: 64 SFSEVLKANSKPKLSLVHDNFGNLQQNLAKLGFIDGIDGIYYDLGVSSPQFDQPERGFSY 123 Query: 128 QKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + + LDMRM + + A +VN + K+L+ IL G+EK A +IA IV +R P Sbjct: 124 RFNARLDMRMDQTKDLDAYKIVNTWSQKELSNILFKYGDEKYARQIAKNIVAKRAIKPIT 183 Query: 187 TTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT +L +I++ + F++ HPA +SFQA+RI VN+E+E L + L A + LK GG + Sbjct: 184 TTFELVDIIKEAIPAFARRTGGHPAKKSFQAIRIAVNDELEVLEKSLLDAIEILKPGGRI 243 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V++F SLED++VKK F S + ++ + I++K +V T +++ N R Sbjct: 244 CVITFQSLEDKIVKKIFKKYSDVDIPRGMPQIPDSLRPTLKIISRKPIVATDKELEENNR 303 Query: 306 SRSAKLRAGMR 316 S SAKLR + Sbjct: 304 SHSAKLRVAEK 314 >gi|23098917|ref|NP_692383.1| hypothetical protein OB1462 [Oceanobacillus iheyensis HTE831] gi|22777145|dbj|BAC13418.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 329 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 112/313 (35%), Positives = 166/313 (53%), Gaps = 9/313 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVS 72 + +H VL E+ I L P + +D T G GG+S + A D+D A++ Sbjct: 4 EMFEHYSVLKEESIKGLAIKPDGIYVDCTTGGGGHSLEIASRLNENGQLFAFDQDKDALA 63 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK 129 ++ + Y ++ Q+ F L++ + G VDG++FDLGVSS Q+D GDRGFS+ Sbjct: 64 AARDRLSTYADRIVFVQSNFRGLEEQLKKHGIEQVDGILFDLGVSSPQLDRGDRGFSYNH 123 Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM S +SA +VVN+ + + L I GEEK + +IA I R+ +TT Sbjct: 124 DALLDMRMDQSQHLSAYEVVNEWSYERLVSIFFSYGEEKFSKQIARKIEAYREQQDIKTT 183 Query: 189 QDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 L +I+ + ++ HPA R FQALRI VN+E+E L A + + G + V Sbjct: 184 HQLVEIIKDAIPAPARRKGGHPAKRIFQALRIAVNDELEVFNNALHQAARLIAVNGRIAV 243 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 ++FHSLEDR+ K+ F S RH I +H A F+ +T+K + ++ NRRS Sbjct: 244 ITFHSLEDRICKQAFKKWSTDKPTPRHLPIVPESHQAPFKLVTRKPITADTSELDENRRS 303 Query: 307 RSAKLRAGMRTVE 319 RSAKLR + E Sbjct: 304 RSAKLRVIEKVSE 316 >gi|312871981|ref|ZP_07732063.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LEAF 2062A-h1] gi|311092558|gb|EFQ50920.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LEAF 2062A-h1] Length = 315 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 111/311 (35%), Positives = 171/311 (54%), Gaps = 13/311 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76 H VLL + I LN V +DATFG GG++ K ++I D+D +A+ ++ Sbjct: 4 KHYSVLLHETIDNLNLKNDGVYVDATFGGGGHASYLLKQLSNGHLIGFDQDEYAIELAKK 63 Query: 77 TM-----RDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSF 127 + + K + SL F LQ + G+DG+ +DLGVSS Q D +RGFS+ Sbjct: 64 SFSEVLKANSKPKLSLVHDNFGNLQQNLAKLGFIDGIDGIYYDLGVSSPQFDQPERGFSY 123 Query: 128 QKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + + LDMRM + + A +VN + K+L+ IL G+EK A +IA IV +R P Sbjct: 124 RFNARLDMRMDQTKDLDAYKIVNTWSQKELSNILFKYGDEKYARQIAKNIVAKRAIKPIT 183 Query: 187 TTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT +L +I++ + F++ HPA +SFQA+RI VN+E+E L + L A + LK GG + Sbjct: 184 TTFELVDIIKEAIPAFARRTGGHPAKKSFQAIRIAVNDELEVLEKSLLDAIEILKPGGRI 243 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V++F SLED++VKK F S + ++ + I++K +V T +++ N R Sbjct: 244 CVITFQSLEDKIVKKIFKKYSDVDIPRGMPQIPDSLKPTLKIISRKPIVATNKELEENNR 303 Query: 306 SRSAKLRAGMR 316 S SAKLR + Sbjct: 304 SHSAKLRVAEK 314 >gi|268319710|ref|YP_003293366.1| S-adenosyl-methyltransferase MraW [Lactobacillus johnsonii FI9785] gi|262398085|emb|CAX67099.1| S-adenosyl-methyltransferase MraW [Lactobacillus johnsonii FI9785] Length = 340 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 111/321 (34%), Positives = 173/321 (53%), Gaps = 13/321 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDR 66 M+S+ H VLL + I LNP G + +DATFG GG++R VI D+ Sbjct: 19 MTSSYKIMKFKHKSVLLHETIDNLNPKDGGLYVDATFGGGGHARYLLSKLNKGTVIGFDQ 78 Query: 67 DPFAVSCGQETMRD-----YKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQ 117 D +A+S +E+ + + L F L++ + + G+DG+ +DLGVSS Q Sbjct: 79 DEYAISMAKESFAKELQVGAEPRLMLVHDNFCHLKENLVELGISDGIDGIYYDLGVSSPQ 138 Query: 118 IDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 D +RGFS++ LDMRM S + A +VN + K+L+ +L G+EK + +IA I Sbjct: 139 FDQPERGFSYRFDARLDMRMDQSQELDAYTMVNTWSQKELSDVLYKYGDEKFSRQIARKI 198 Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 V RR+ P TT DL +I+ + ++ + HPA +SFQA+R+ VNNE+ L + L A Sbjct: 199 VDRRKEKPIVTTFDLVDVIKDAIPAYARRSGGHPAKKSFQAIRVAVNNELVVLQESLEEA 258 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295 K LK GG + V++F S ED++VKK F S + + + I++K ++ Sbjct: 259 IKLLKPGGRISVITFQSHEDKIVKKIFKKYSEVEIPRGMPMVPADSKPTLRLISRKPIMA 318 Query: 296 TQEDVAFNRRSRSAKLRAGMR 316 + +++ N RS SAKLR + Sbjct: 319 SSDELEENNRSHSAKLRVAEK 339 >gi|312873217|ref|ZP_07733273.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LEAF 2052A-d] gi|312874604|ref|ZP_07734628.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LEAF 2053A-b] gi|325911728|ref|ZP_08174135.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners UPII 143-D] gi|311089834|gb|EFQ48254.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LEAF 2053A-b] gi|311091228|gb|EFQ49616.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LEAF 2052A-d] gi|325476494|gb|EGC79653.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners UPII 143-D] Length = 317 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 111/311 (35%), Positives = 171/311 (54%), Gaps = 13/311 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76 H VLL + I LN V +DATFG GG++ K ++I D+D +A+ ++ Sbjct: 6 KHYSVLLHETIDNLNLKNDGVYVDATFGGGGHASYLLKQLSNGHLIGFDQDEYAIELAKK 65 Query: 77 TM-----RDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSF 127 + + K + SL F LQ + G+DG+ +DLGVSS Q D +RGFS+ Sbjct: 66 SFSEVLKANSKPKLSLVHDNFGNLQQNLAKLGFIDGIDGIYYDLGVSSPQFDQPERGFSY 125 Query: 128 QKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + + LDMRM + + A +VN + K+L+ IL G+EK A +IA IV +R P Sbjct: 126 RFNARLDMRMDQTKDLDAYKIVNTWSQKELSNILFKYGDEKYARQIAKNIVAKRAIKPIT 185 Query: 187 TTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT +L +I++ + F++ HPA +SFQA+RI VN+E+E L + L A + LK GG + Sbjct: 186 TTFELVDIIKEAIPAFARRTGGHPAKKSFQAIRIAVNDELEVLEKSLLDAIEILKPGGRI 245 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V++F SLED++VKK F S + ++ + I++K +V T +++ N R Sbjct: 246 CVITFQSLEDKIVKKIFKKYSDVDIPRGMPQIPDSLKPTLKIISRKPIVATNKELEENNR 305 Query: 306 SRSAKLRAGMR 316 S SAKLR + Sbjct: 306 SHSAKLRVAEK 316 >gi|225568665|ref|ZP_03777690.1| hypothetical protein CLOHYLEM_04743 [Clostridium hylemonae DSM 15053] gi|225162593|gb|EEG75212.1| hypothetical protein CLOHYLEM_04743 [Clostridium hylemonae DSM 15053] Length = 311 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 102/307 (33%), Positives = 169/307 (55%), Gaps = 9/307 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 +H VLL++ I LN P +D T G GG++ C+ N ++ +D+D A++ Sbjct: 4 EHKSVLLDETINGLNIRPDGTYVDGTLGGGGHAYEICRHLGNKGSIVGIDQDAAAITAAG 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 ++D+ E+ ++ ++ + ++ + G VDG+V DLGVSS Q+D +RGFS+++ P Sbjct: 64 ARLKDFGEKVTIVRSNYCDMKSQLHKLGIDRVDGIVLDLGVSSYQLDTAERGFSYREDAP 123 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM ++A D+VN + DL R++ GE+K A IA I R+ +TT L Sbjct: 124 LDMRMDTRQKMTARDIVNDYSEMDLYRVIRDYGEDKFAKNIAKHIAAARRERSIETTGQL 183 Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 + +I++ + + HP+ R+FQA+RI +N E+E L L LK GG L +++F Sbjct: 184 TEIIRQAIPMKYQKKSGHPSKRTFQAIRIELNRELEVLRDSLDEMIDLLKPGGRLCIITF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK F + + +T+K ++P +E++ +N R++SA Sbjct: 244 HSLEDRIVKSAFKKNENPCTCPSDFPVCVCGKESKGSILTRKPILPGEEELEYNSRAKSA 303 Query: 310 KLRAGMR 316 KLR R Sbjct: 304 KLRIFER 310 >gi|325679058|ref|ZP_08158652.1| S-adenosyl-methyltransferase MraW [Ruminococcus albus 8] gi|324109182|gb|EGC03404.1| S-adenosyl-methyltransferase MraW [Ruminococcus albus 8] Length = 319 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 115/311 (36%), Positives = 169/311 (54%), Gaps = 8/311 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77 HVPVLLE+ I L+ P + D T G G+S+ K +I++DRDP AV+ E Sbjct: 5 HVPVLLEECIEGLDIKPDGIYCDGTAGGAGHSKEIAKRLTTGRLISVDRDPEAVAVATER 64 Query: 78 MRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + ++ + +S+L + + G DG++ DLGVSS Q+D +RGFS+ PLD Sbjct: 65 LAGLPA--TVVRGNYSELDEIFERLGLSGADGILMDLGVSSYQLDNAERGFSYHADAPLD 122 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRMS G+SA DVVN + K L RI+ GEEK + IA IV+ RQ P +TT +L+ + Sbjct: 123 MRMSSEGLSARDVVNGYDEKTLARIIFEYGEEKYSRSIARRIVEARQVRPIETTLELAEI 182 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 I+ V +P ++FQA+RI VN E+E L+ L A L GG L +++FHSLE Sbjct: 183 IKTGVPQKVRREKNPCKKTFQAIRIEVNAELEHLSVALDKAFDLLNVGGRLCIITFHSLE 242 Query: 255 DRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 DRLVK+ F + + + +T+K + PT+ + N+R+ SAKLR Sbjct: 243 DRLVKQRFRGFCQGCVCPPDFPVCVCGRTPRGRLVTRKPIEPTERENTENKRAHSAKLRI 302 Query: 314 GMRTVERSIED 324 + E + Sbjct: 303 IEKIKEEKDPN 313 >gi|227529006|ref|ZP_03959055.1| S-adenosyl-methyltransferase [Lactobacillus vaginalis ATCC 49540] gi|227351018|gb|EEJ41309.1| S-adenosyl-methyltransferase [Lactobacillus vaginalis ATCC 49540] Length = 316 Score = 383 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 117/314 (37%), Positives = 177/314 (56%), Gaps = 13/314 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73 T HV VLL + +A LN P +DAT G GG+S + + + D+D A+ Sbjct: 2 TEFKHVTVLLNEAVAGLNIRPDGTYVDATLGGGGHSSAILNQLTTGRLYSFDQDQTAIRY 61 Query: 74 GQETMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQ 128 Q+ ++ + + L + F L + GV DG+V+DLGVSS Q D RGFS++ Sbjct: 62 NQQHLKKFIDDGRSILIEDNFRNLGTALAKNGVKSVDGIVYDLGVSSPQFDDAQRGFSYK 121 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 PLDMRM+ +SA +VVN+ + L +IL GEE+ A +IA I +RR+S P +T Sbjct: 122 LDAPLDMRMNQQQALSAMNVVNEWPYEKLVKILYRYGEERFAKQIARKIERRRESKPIKT 181 Query: 188 TQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T +L +I++ + + + + HPA ++FQA+RI VN+E+ L L A + L GG + Sbjct: 182 TFELVDVIKEAIPAAARRHGGHPAKKTFQAIRIAVNDELGALEDSLEQALELLNVGGRIS 241 Query: 247 VVSFHSLEDRLVKKFFASR---SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 V++F SLEDRLVK F + + ++ +IP P F+ I KK ++P+QE++A N Sbjct: 242 VITFQSLEDRLVKTMFHEKVSLADELPPGLPVIPPEMQPK-FKLINKKPILPSQEELANN 300 Query: 304 RRSRSAKLRAGMRT 317 R+ SAKLR R Sbjct: 301 HRAHSAKLRIIERI 314 >gi|315653716|ref|ZP_07906636.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Lactobacillus iners ATCC 55195] gi|315489078|gb|EFU78720.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Lactobacillus iners ATCC 55195] Length = 315 Score = 383 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 112/311 (36%), Positives = 172/311 (55%), Gaps = 13/311 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQE 76 H VLL + I LN V +DATFG GG++ K S ++I D+D +A+ ++ Sbjct: 4 KHYSVLLHETIDNLNLKSDGVYVDATFGGGGHASYLLKQLSNVHLIGFDQDEYAIELAKK 63 Query: 77 TM-----RDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSF 127 + + K + SL F LQ + G+DG+ +DLGVSS Q D +RGFS+ Sbjct: 64 SFSEVLKANSKPKLSLVHDNFGNLQQNLAKLGFIDGIDGIYYDLGVSSPQFDQPERGFSY 123 Query: 128 QKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + + LDMRM + + A +VN + K+L+ IL G+EK A +IA IV +R P Sbjct: 124 RFNARLDMRMDQTKDLDAYKIVNTWSQKELSNILFKYGDEKYARQIAKNIVAKRAIKPIT 183 Query: 187 TTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT +L +I++ + F++ HPA +SFQA+RI VN+E+E L + L A + LK GG + Sbjct: 184 TTFELVDIIKEAIPAFARRTGGHPAKKSFQAIRIAVNDELEVLEKSLLDAIEILKPGGRI 243 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V++F SLED++VKK F S + ++ + I++K +V T +++ N R Sbjct: 244 CVITFQSLEDKIVKKIFKKYSDVDIPRGMPQIPDSLKPTLKIISRKPIVATNKELEENNR 303 Query: 306 SRSAKLRAGMR 316 S SAKLR + Sbjct: 304 SHSAKLRVAEK 314 >gi|209550182|ref|YP_002282099.1| S-adenosyl-methyltransferase MraW [Rhizobium leguminosarum bv. trifolii WSM2304] gi|262825400|sp|B5ZWK2|RSMH_RHILW RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|209535938|gb|ACI55873.1| S-adenosyl-methyltransferase MraW [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 341 Score = 383 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 177/323 (54%), Positives = 228/323 (70%), Gaps = 1/323 (0%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+PVLL++V++ L PAPGK+ILD TFGAGGYS + G+ VIALDRDP A++ GQ + Sbjct: 19 HIPVLLDEVLSALAPAPGKLILDGTFGAGGYSSAILAAGAEVIALDRDPTAIASGQAMVA 78 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 + + L + FS L D+ P G+DGVV D+GVSSMQID +RGFSFQK+GPLDMRMS Sbjct: 79 AHGGRLKLVHSQFSHLADHAPQGGLDGVVLDIGVSSMQIDEAERGFSFQKNGPLDMRMSA 138 Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199 +G+SA+DVVN+A V DL RI LGEE QA RIAHAI KRR+ PF+TT+DL+ LI+ Sbjct: 139 AGVSAADVVNRAKVADLIRIFHFLGEESQAPRIAHAIEKRREEKPFETTRDLAGLIELVT 198 Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259 ++IHPATR FQALRIFVN+E+ ELAQ L +AE ALK GG L+VV+FHSLEDR+VK Sbjct: 199 PRKMKDKIHPATRVFQALRIFVNDELGELAQALFAAEAALKPGGRLVVVTFHSLEDRIVK 258 Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319 KFF+ R+GK RH+ ++ A F +I K +V ++ + N R+RSAKLRAG+RT Sbjct: 259 KFFSDRAGKASGSRHLPVAHERAATFAAIGKPMVSASEAEAEINPRARSAKLRAGLRTEA 318 Query: 320 RS-IEDDSFVHLPRLPTLSQFRG 341 + D S P L +L + G Sbjct: 319 AAEAADMSLFGFPNLASLGKLGG 341 >gi|291530304|emb|CBK95889.1| S-adenosyl-methyltransferase MraW [Eubacterium siraeum 70/3] Length = 308 Score = 383 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 116/303 (38%), Positives = 174/303 (57%), Gaps = 8/303 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77 H+PVLL + I L+ P + +D T G G+S K +I DRDP AV +E Sbjct: 7 HIPVLLSETIESLDIKPDGIYVDCTTGFAGHSSEIAKRLTTGRLIGFDRDPDAVKAAEEK 66 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++DY +L FS + + + GV DGV+ DLGVSS Q+D +RGFS+ + PLD Sbjct: 67 LKDYPH--TLINRKFSTFDESLDEIGVGKVDGVLMDLGVSSYQLDTAERGFSYHEDAPLD 124 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRMS SG+SA DVVN+ + + L +IL GEEK A I I+K R++AP +TT +L+ + Sbjct: 125 MRMSKSGLSAYDVVNEYSKEQLEKILFEYGEEKFAHGIVSGILKARETAPIKTTLELAEI 184 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 +++ V +P ++FQA+RI VN E++EL +G+ A + L AGG L +++FHS+E Sbjct: 185 VKRNVPLKVRKEKNPCKKTFQAIRIEVNGELDELKKGMSEAFERLSAGGRLAIITFHSIE 244 Query: 255 DRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 DR+VK F + +++ +K V ++E++ N RSRSAKLR Sbjct: 245 DRIVKNTFREYCTGCTCPPDFPVCVCGKKPRGRTVYRKTVTASEEELEVNNRSRSAKLRV 304 Query: 314 GMR 316 + Sbjct: 305 IEK 307 >gi|33301401|sp|Q8ER53|RSMH_OCEIH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 325 Score = 383 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 112/312 (35%), Positives = 166/312 (53%), Gaps = 9/312 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSC 73 + +H VL E+ I L P + +D T G GG+S + A D+D A++ Sbjct: 1 MFEHYSVLKEESIKGLAIKPDGIYVDCTTGGGGHSLEIASRLNENGQLFAFDQDKDALAA 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 ++ + Y ++ Q+ F L++ + G VDG++FDLGVSS Q+D GDRGFS+ Sbjct: 61 ARDRLSTYADRIVFVQSNFRGLEEQLKKHGIEQVDGILFDLGVSSPQLDRGDRGFSYNHD 120 Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM S +SA +VVN+ + + L I GEEK + +IA I R+ +TT Sbjct: 121 ALLDMRMDQSQHLSAYEVVNEWSYERLVSIFFSYGEEKFSKQIARKIEAYREQQDIKTTH 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L +I+ + ++ HPA R FQALRI VN+E+E L A + + G + V+ Sbjct: 181 QLVEIIKDAIPAPARRKGGHPAKRIFQALRIAVNDELEVFNNALHQAARLIAVNGRIAVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K+ F S RH I +H A F+ +T+K + ++ NRRSR Sbjct: 241 TFHSLEDRICKQAFKKWSTDKPTPRHLPIVPESHQAPFKLVTRKPITADTSELDENRRSR 300 Query: 308 SAKLRAGMRTVE 319 SAKLR + E Sbjct: 301 SAKLRVIEKVSE 312 >gi|229019122|ref|ZP_04175956.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus AH1273] gi|229025365|ref|ZP_04181783.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus AH1272] gi|228735950|gb|EEL86527.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus AH1272] gi|228742138|gb|EEL92304.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus AH1273] Length = 302 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 106/301 (35%), Positives = 163/301 (54%), Gaps = 9/301 (2%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDY 81 +++ + L+ P +D T G GG+S G +IA D+D A+ +E Y Sbjct: 1 MKETVDGLDIKPSGTYVDCTLGGGGHSSYLLSQLTDGGKLIAFDQDEIAIQNAKEKFSSY 60 Query: 82 KEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138 EQF ++ F L + + + G VDG++FDLGVSS Q+D +RGFS+ PLDMRM Sbjct: 61 GEQFVTVKSNFRYLSEKLHELGITEVDGILFDLGVSSPQLDTPERGFSYHHDAPLDMRMD 120 Query: 139 CSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK 197 ++A DVVN + + L RI GEEK + +I I R++ +TT +L LI++ Sbjct: 121 QDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIVRKIEAYRENKAIETTGELVELIKE 180 Query: 198 TVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 + ++ HPA R FQA+RI VN+E++ + L SA +K GG + V++FHSLEDR Sbjct: 181 GIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIDMVKPGGRVSVITFHSLEDR 240 Query: 257 LVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 + K F S + I + + IT+K ++P+ ++ N R+RSAKLR Sbjct: 241 ICKTTFKRNSTTPQLPPGLPIIPDEFKPKLKLITRKPILPSDIELEENNRARSAKLRIAE 300 Query: 316 R 316 + Sbjct: 301 K 301 >gi|315652174|ref|ZP_07905171.1| exopolyphosphatase [Eubacterium saburreum DSM 3986] gi|315485569|gb|EFU75954.1| exopolyphosphatase [Eubacterium saburreum DSM 3986] Length = 311 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 106/306 (34%), Positives = 171/306 (55%), Gaps = 8/306 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76 +H VLL++VI LN P +D T G G++ K G +I +D+D A+ E Sbjct: 4 NHKSVLLDEVIESLNIKPDGYYVDGTLGGAGHALEVIKRLKGGRLIGIDQDADAIKAATE 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + DYK + + + + ++D + +G VDG+ DLGVSS Q+D DRGF+++ PL Sbjct: 64 RLIDYKNRVIIVRDNYVNIEDILKREGIDKVDGIYVDLGVSSYQLDTADRGFTYRFDAPL 123 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + + ASD+VN + +L ++ GE++ A IA IV+ R +TT +L Sbjct: 124 DMRMDDRNELKASDIVNNYSEAELFHVIRDYGEDRFAKNIAKHIVEYRNKKKIETTFELV 183 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + + HPA R+FQA+RI +N E+E L + + LK GG L V++FH Sbjct: 184 DIIKSAIPMKIQVTGGHPAKRTFQAIRIELNKELEVLKDSIDVMIELLKPGGRLSVITFH 243 Query: 252 SLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK+ F + + + + + + IT+K V+P++E++ N R++SAK Sbjct: 244 SLEDRIVKQAFKKAESPCVCPKKFPVCVCGNKSKGRVITRKAVLPSKEELEENSRAKSAK 303 Query: 311 LRAGMR 316 LR + Sbjct: 304 LRVFEK 309 >gi|42518892|ref|NP_964822.1| S-adenosyl-methyltransferase MraW [Lactobacillus johnsonii NCC 533] gi|41583178|gb|AAS08788.1| S-adenosyl-methyltransferase MraW [Lactobacillus johnsonii NCC 533] Length = 322 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 110/321 (34%), Positives = 173/321 (53%), Gaps = 13/321 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDR 66 M+S+ H VLL + I LNP G + +DATFG GG++R VI D+ Sbjct: 1 MTSSYKIMKFKHKSVLLHETIDNLNPKDGGLYVDATFGGGGHARYLLSKLNKGTVIGFDQ 60 Query: 67 DPFAVSCGQETMRD-----YKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQ 117 D +A+S +E+ + + L F L++ + + G+DG+ +DLGVSS Q Sbjct: 61 DEYAISMAKESFAKELQVGAEPRLMLVHDNFCHLKENLVELGISDGIDGIYYDLGVSSPQ 120 Query: 118 IDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 D +RGFS++ LDMRM S + A +VN + K+L+ +L G+EK + +IA I Sbjct: 121 FDQPERGFSYRFDARLDMRMDQSQELDAYTIVNTWSQKELSDVLYKYGDEKFSRQIARKI 180 Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 V RR+ P TT DL +I+ + ++ + HPA +SFQA+R+ VN+E+ L + L A Sbjct: 181 VDRRKEKPIVTTFDLVDVIKDAIPAYARRSGGHPAKKSFQAIRVAVNDELGVLQESLEEA 240 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295 K LK GG + V++F S ED++VKK F S + + + I++K ++ Sbjct: 241 IKLLKPGGRISVITFQSHEDKIVKKIFKKYSEVEIPRGMPMVPADSKPTLRLISRKPIMA 300 Query: 296 TQEDVAFNRRSRSAKLRAGMR 316 + +++ N RS SAKLR + Sbjct: 301 SSDELEENNRSHSAKLRVAEK 321 >gi|306844338|ref|ZP_07476930.1| S-adenosyl-methyltransferase MraW [Brucella sp. BO1] gi|306275410|gb|EFM57151.1| S-adenosyl-methyltransferase MraW [Brucella sp. BO1] Length = 346 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 164/326 (50%), Positives = 216/326 (66%), Gaps = 6/326 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 HVPVL+ +VI L PAPG VI+D TFGAGGY+R + G++VIA+D DP A+ G+ + Sbjct: 18 HVPVLIAEVIDALKPAPGAVIVDGTFGAGGYTRRILETGADVIAIDCDPTAIEAGRAMEK 77 Query: 80 DYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++ + +L ++ FS L + V VDGVV D+GVSSMQID +RGFSFQK GPLD Sbjct: 78 EFPGRLNLVESRFSALDEAVARMSGAGKKVDGVVLDIGVSSMQIDEAERGFSFQKDGPLD 137 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRMS G SA+D VN+ DL RI LGEE+ A RIA I KRR + PF T DL++ Sbjct: 138 MRMSSRGPSAADAVNRLKTGDLARIFNFLGEERHAGRIARMIEKRRAAKPFTRTLDLANA 197 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 I+ V + +RIHPATR FQALR++VN+E+ ELA+ L +AE+ +K GG L++V+FHSLE Sbjct: 198 IETLVGRNPKDRIHPATRVFQALRVYVNDELGELARALLAAERIIKPGGRLVIVTFHSLE 257 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 DR+VK+FFA R+G RHM ++ F K V PT E+ N R+RSAKLRAG Sbjct: 258 DRMVKRFFADRAGGSAGSRHMPETHMRLPSFTPAVKGAVGPTPEEEERNPRARSAKLRAG 317 Query: 315 MRTVERSIEDD-SFVHLPRLPTLSQF 339 +RT +EDD S LP+LP ++ Sbjct: 318 IRTENPPLEDDLSLFGLPKLPETNEL 343 >gi|254500690|ref|ZP_05112841.1| S-adenosyl-methyltransferase MraW [Labrenzia alexandrii DFL-11] gi|222436761|gb|EEE43440.1| S-adenosyl-methyltransferase MraW [Labrenzia alexandrii DFL-11] Length = 346 Score = 382 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 160/327 (48%), Positives = 218/327 (66%), Gaps = 7/327 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 HVPVLL +V+ L+P PG+V++D TFGAGGYSR + + V+ +DRDP A++ GQE + Sbjct: 19 HVPVLLNEVLEWLDPQPGEVMVDGTFGAGGYSRKLLERDATVVGIDRDPDAIAGGQELVT 78 Query: 80 DYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + L F+ L+ + + GVDGVV DLGVSSMQ+D +RGFSF + GPLDMR Sbjct: 79 QSDGRLILVPGQFADLETHARESGFDGVDGVVLDLGVSSMQLDQAERGFSFLRDGPLDMR 138 Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 M +G SA+DVVN+ V+DL RI+G+LGEEK+A +AHAI R+ PF T +L++LI+ Sbjct: 139 MEQAGPSAADVVNELPVRDLIRIIGVLGEEKRAPSVAHAIDNARKEKPFSRTLELANLIE 198 Query: 197 KTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 K + K +IHPATR+FQALRI+VN E+ + AQ L +AE+ LK GG L++VSFHSLED Sbjct: 199 KVLGRSPKKAQIHPATRTFQALRIYVNGELHQAAQALGAAERILKPGGRLVLVSFHSLED 258 Query: 256 RLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 R+VK+FF R+ + RHM PA F+ +T+K V + N R+RSAKLRAG Sbjct: 259 RIVKRFFQDRTKTRGGGSRHMPEEEVPPATFEILTRKAVEARDMETDANPRARSAKLRAG 318 Query: 315 MRTVERSIEDDSFVHLPRLPTLSQFRG 341 RT + E D +H+ +P L+ F G Sbjct: 319 RRTEAPARELD--IHVAGVPRLAAFHG 343 >gi|153009066|ref|YP_001370281.1| S-adenosyl-methyltransferase MraW [Ochrobactrum anthropi ATCC 49188] gi|262824676|sp|A6WZP8|RSMH_OCHA4 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|151560954|gb|ABS14452.1| S-adenosyl-methyltransferase MraW [Ochrobactrum anthropi ATCC 49188] Length = 347 Score = 382 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 164/326 (50%), Positives = 214/326 (65%), Gaps = 6/326 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 HVPVL+ +VI L P G VI+D TFGAGGY+R + G++VIA+DRDP A+ G+ + Sbjct: 19 HVPVLIAEVIDALKPVSGAVIVDGTFGAGGYTRRILEAGADVIAIDRDPTAIEAGRAMEK 78 Query: 80 DYKEQFSLFQATFSQLQDYV-----PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + + L ++ FS L + V VDGVV D+GVSSMQID +RGFSFQK GPLD Sbjct: 79 QFPGRLDLVESRFSALDEAVSKVKGAGSKVDGVVLDIGVSSMQIDEAERGFSFQKDGPLD 138 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRMS G SA+DVVN+ DL RI LGEE+ A RIA I KRR + PF T DL++ Sbjct: 139 MRMSKKGPSAADVVNRLKTGDLARIFNFLGEERHAGRIARMIDKRRTAQPFTRTLDLANA 198 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 I+ V + +RIHPATR FQALR++VN+E+ ELA+ L +AE+ LK GG L+VV+FHSLE Sbjct: 199 IETLVGRNPKDRIHPATRVFQALRVYVNDELGELARALLAAERILKPGGRLVVVTFHSLE 258 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 DR+VK++FA R+G RH+ ++ F K V PT E+ N R+RSAKLRAG Sbjct: 259 DRMVKRYFADRAGGSAGSRHLPETHVRLPSFTPAVKGAVGPTAEEEERNPRARSAKLRAG 318 Query: 315 MRTVERSIEDD-SFVHLPRLPTLSQF 339 +RT +EDD S LP+LP ++ Sbjct: 319 IRTENPPLEDDLSLFGLPKLPETNEL 344 >gi|307944902|ref|ZP_07660239.1| S-adenosyl-methyltransferase MraW [Roseibium sp. TrichSKD4] gi|307771826|gb|EFO31050.1| S-adenosyl-methyltransferase MraW [Roseibium sp. TrichSKD4] Length = 346 Score = 382 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 162/327 (49%), Positives = 220/327 (67%), Gaps = 7/327 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 HVPVLL+ V+ L P PG+VI+D TFGAGGYSR+ + G++VI +DRDP A++ GQ + Sbjct: 19 HVPVLLDLVLEYLAPNPGEVIIDGTFGAGGYSRALLERGASVIGVDRDPDAIAGGQPLVE 78 Query: 80 DYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + +L F+ L+ + G VDGVV DLGVSSMQ+D +RGFSF + GPLDMR Sbjct: 79 ASDGRLTLVPGCFADLETHARSLGHDAVDGVVLDLGVSSMQLDEAERGFSFLRDGPLDMR 138 Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 M G SA+DVVN+ +V+DL RI+G+LGEEK+A+ +AHAI R+ PF T +L++L++ Sbjct: 139 MEQEGPSAADVVNELSVRDLIRIIGVLGEEKRATTVAHAIDNARKEGPFTRTGELAALVE 198 Query: 197 KTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 K + K +IHPATR+FQALRI+VN E+ + AQ L +AE LK GG L+VVSFHSLED Sbjct: 199 KVLGRSPKKAQIHPATRTFQALRIYVNGELHQAAQALGAAENILKPGGRLVVVSFHSLED 258 Query: 256 RLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 R+VK+F A RS RHM + P F+ +T+K + T ++A N R+RSAKLRAG Sbjct: 259 RIVKRFLADRSKTHAGGSRHMPETEVEPPTFELLTRKAIDGTDAEIAGNPRARSAKLRAG 318 Query: 315 MRTVERSIEDDSFVHLPRLPTLSQFRG 341 RT + D +H +P L+ F+G Sbjct: 319 RRTTNPARSLD--IHAAGVPRLADFKG 343 >gi|169348415|ref|ZP_02866353.1| hypothetical protein CLOSPI_00130 [Clostridium spiroforme DSM 1552] gi|169293884|gb|EDS76017.1| hypothetical protein CLOSPI_00130 [Clostridium spiroforme DSM 1552] Length = 309 Score = 382 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 104/310 (33%), Positives = 167/310 (53%), Gaps = 10/310 (3%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74 + DHV VLL + I LN + +D T G GG+S K ++ D+D A+ Sbjct: 1 MFDHVTVLLNEAIEGLNINEDGIYVDCTLGGGGHSCEILKRLTTGHLYCFDQDYTAIEAA 60 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++ + + + +++ + F +++ + + VDG++FDLGVSS Q D G RGFS+ Sbjct: 61 KKRLSEISDNYTIIYSNFVNIKEKLEELNVHKVDGILFDLGVSSPQFDTGSRGFSYNYDA 120 Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM + + A +VN + + L IL +EK A RIA I + R + P +TT + Sbjct: 121 RLDMRMDINNPLDAYYIVNNWSYEQLVEILFKYADEKFAKRIARKIEQARSNKPIETTFE 180 Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I++ + + + HPA R+FQALRI VN+E+ + L+ A L + G + V++ Sbjct: 181 LVEIIKEAIPAAARRKGGHPAKRTFQALRIAVNDELNVFDRALKDALDLLNSKGRISVIT 240 Query: 250 FHSLEDRLVKKFFAS--RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 FHSLED++ K F + V +IP + P ++ I KK +V + E++ N R+ Sbjct: 241 FHSLEDKICKYTFNDVTKLKDVPPGLPVIPEHLLPK-YKLINKKAIVASDEELEMNHRAH 299 Query: 308 SAKLRAGMRT 317 SAKLR R Sbjct: 300 SAKLRIIERV 309 >gi|325912968|ref|ZP_08175341.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners UPII 60-B] gi|325477648|gb|EGC80787.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners UPII 60-B] Length = 317 Score = 382 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 111/311 (35%), Positives = 171/311 (54%), Gaps = 13/311 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76 H VLL + I LN V +DATFG GG++ K ++I D+D +A+ ++ Sbjct: 6 KHYSVLLHETIDNLNLKNDGVYVDATFGGGGHASYLLKQLSNGHLIGFDQDEYAIELAKK 65 Query: 77 TM-----RDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSF 127 + + K + SL F LQ + G+DG+ +DLGVSS Q D +RGFS+ Sbjct: 66 SFSEVLKANSKPKLSLVHDNFGNLQQNLAKLGFIDGIDGIYYDLGVSSPQFDQPERGFSY 125 Query: 128 QKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + + LDMRM + + A +VN + K+L+ IL G+EK A +IA IV +R P Sbjct: 126 RFNARLDMRMDQTKDLDAYKIVNTWSQKELSNILFKYGDEKYARQIAKNIVAKRAIKPIT 185 Query: 187 TTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT +L +I++ + F++ HPA +SFQA+RI VN+E+E L + L A + LK GG + Sbjct: 186 TTFELVDIIKEAIPAFARRTGGHPAKKSFQAIRIAVNDELEVLEKSLLEAIEILKPGGRI 245 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V++F SLED++VKK F S + ++ + I++K +V T +++ N R Sbjct: 246 CVITFQSLEDKIVKKIFKKYSDVDIPRGMPQIPDSLKPTLKIISRKPIVATNKELEENNR 305 Query: 306 SRSAKLRAGMR 316 S SAKLR + Sbjct: 306 SHSAKLRVAEK 316 >gi|288553170|ref|YP_003425105.1| S-adenosyl-methyltransferase MraW [Bacillus pseudofirmus OF4] gi|288544330|gb|ADC48213.1| S-adenosyl-methyltransferase MraW [Bacillus pseudofirmus OF4] Length = 311 Score = 382 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 108/309 (34%), Positives = 166/309 (53%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + HV VL E+ + L P + +D T G G+S + ++ A D+D A+S Sbjct: 1 MFTHVTVLKEESVNGLAIKPDGIYVDCTLGGAGHSSLILEQLNDEGHLYAFDQDDTALSN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E + YK +F+L ++ F L++ + G VDGV+FDLGVSS Q+D +RGFS+ + Sbjct: 61 AEEVLAPYKGKFTLIRSNFRFLREELAKHGISKVDGVLFDLGVSSPQLDEAERGFSYHQD 120 Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM + ++A VVN+ L I+ GEEK A +IA I RR+ +TT Sbjct: 121 AALDMRMDQTAPLTAHQVVNEWEFNRLVSIISRYGEEKFAKQIARKIEARREIKTIETTG 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I+ + ++ HPA R+FQA+RI VN+E+ + L A G + V+ Sbjct: 181 ELVEIIKDAIPAPARRTGGHPAKRTFQAIRIAVNDELGSFEEALEDAITITNPKGRICVI 240 Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F +S G + + + IT+K +V E++ N R+R Sbjct: 241 TFHSLEDRLCKEIFKEKSKGPDLPPGLPVIPEGFEPELKLITRKPIVAGNEELTANNRAR 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRIAEK 309 >gi|158426170|ref|YP_001527462.1| S-adenosyl-methyltransferase MraW [Azorhizobium caulinodans ORS 571] gi|263446764|sp|A8HZ68|RSMH_AZOC5 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|158333059|dbj|BAF90544.1| methyltransferase [Azorhizobium caulinodans ORS 571] Length = 346 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 147/328 (44%), Positives = 199/328 (60%), Gaps = 6/328 (1%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQE 76 H+PV+L +V+A L P LD TFGAGGY+R+ + VIA+DRDP A++ GQ Sbjct: 17 ARHLPVMLAEVLAHLAPKDAGTCLDGTFGAGGYTRAILEAANGRVIAIDRDPTAIAGGQA 76 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + + +L FS L D G +DGVV D+GVSSMQ+D DRGFSF++ GPL Sbjct: 77 LVEETGGRLTLVHERFSHLDQVAQDLGAAPLDGVVLDIGVSSMQLDEADRGFSFRRDGPL 136 Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 DMRM+ G SA+D+V + +L ++ LGEE+ + +IA AIV R +P T L+ Sbjct: 137 DMRMANDGPSAADLVADLDEVELAHVIWTLGEERFSRQIARAIVNARAESPITRTTQLAD 196 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 ++ K V+ +K +HPATR+FQALRI VN E++EL L +AE+ LK GG L+VV+FHSL Sbjct: 197 IVSKVVW-AKPGEMHPATRTFQALRIAVNEELQELVGALAAAERVLKPGGRLVVVTFHSL 255 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 EDR+VK F + RS A RHM + F+ + K V P ++VA N R+RSAKLRA Sbjct: 256 EDRIVKNFLSHRSKAPSASRHMPQAEGPAPSFRLVAKGAVEPGSDEVAGNPRARSAKLRA 315 Query: 314 GMRTVERSIEDDSFVHLPRLPTLSQFRG 341 RT + D L LSQ RG Sbjct: 316 AERTDAPAHPDGDLAGLLP-ADLSQRRG 342 >gi|222528776|ref|YP_002572658.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor bescii DSM 6725] gi|263446717|sp|B9MQ93|RSMH_ANATD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|222455623|gb|ACM59885.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor bescii DSM 6725] Length = 307 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 125/309 (40%), Positives = 190/309 (61%), Gaps = 10/309 (3%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSC 73 + +H+PVLLE+ ++ L P + +DATFG GG+S+ + SN +IA+DRD A+ Sbjct: 1 MFEHIPVLLEESVSFLITNPDGIYVDATFGLGGHSKRILEKISNKGFLIAIDRDLEAIEL 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130 G+ + YK + ++FS++ + + G+ DG++FD GVSS+Q+D +RGFS+ K Sbjct: 61 GKRKLEAYK-NVKIVHSSFSKVDELLECLGIEKIDGILFDFGVSSLQLDKQERGFSYNKE 119 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM S ++A DVVN + +DL +I+ GEE+ A RIA AIV+RR P +TT Sbjct: 120 AFLDMRMDTTSKLTAYDVVNFYSQEDLEKIIREYGEERFARRIAKAIVERRSKKPIETTT 179 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 +LSSLI V K+ HPA R+FQA+RI VN E++E+ L + + L++GG + +S Sbjct: 180 ELSSLISSLVPRPKDGS-HPAQRTFQAIRIEVNGELDEIKIALEKSLRFLRSGGRICAIS 238 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK+FF S + + + + ITKK + P++E++ N+RS S Sbjct: 239 FHSLEDRIVKEFFKFHSLECVCPKDIPVCRCGKKKELNIITKKPITPSKEEIESNKRSHS 298 Query: 309 AKLRAGMRT 317 AKLR + Sbjct: 299 AKLRVAEKV 307 >gi|56964129|ref|YP_175860.1| S-adenosyl-methyltransferase MraW [Bacillus clausii KSM-K16] gi|115311580|sp|Q5WFG1|RSMH_BACSK RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|56910372|dbj|BAD64899.1| S-adenosyl-methyltransferase MraW [Bacillus clausii KSM-K16] Length = 314 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 110/309 (35%), Positives = 166/309 (53%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H+ VL E+ + L PG V +D T G GG+S ++ A D+D A+S Sbjct: 1 MFSHITVLKEESVNGLAVKPGGVYVDCTLGGGGHSERILTALAGEGHLYAFDQDEAALSF 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKS 130 E + +KE + ++ F +++ + +GVD G++FDLGVSS Q+D RGFS+ + Sbjct: 61 AAEKLSRFKENITFIRSNFRHIKEELRMRGVDKVDGILFDLGVSSPQLDEASRGFSYHQD 120 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM S ++A +VVN L I+ GEEK + +IA I R P +TT Sbjct: 121 APLDMRMDQSASLTAREVVNTWPFAKLHSIISRYGEEKFSKQIARKIEAYRLKQPIETTG 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I++ + ++ HPA R+FQA+RI VN+E+ L + L GG + V+ Sbjct: 181 ELVDIIKEAIPAPARRAGGHPAKRTFQAIRIAVNDELGAFEDALTDGFELLNEGGRMAVI 240 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F ++ + I A F ITKK +V E++ N R+R Sbjct: 241 TFHSLEDRLCKQMFKEKTKLPDLPKGLPIIPADQKAPFALITKKPIVANDEEIKANNRAR 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRIIEK 309 >gi|27381721|ref|NP_773250.1| S-adenosyl-methyltransferase MraW [Bradyrhizobium japonicum USDA 110] gi|27354890|dbj|BAC51875.1| S-adenosyl-methyltransferase [Bradyrhizobium japonicum USDA 110] Length = 387 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 151/327 (46%), Positives = 202/327 (61%), Gaps = 5/327 (1%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCG 74 + H+PVL + I L P G + +DATFGAGGYSR+ G+ +IA+DRD A++ G Sbjct: 60 SSAPHIPVLGREAIDHLAPREGGIYVDATFGAGGYSRAILDVPGTRLIAIDRDRTAIAGG 119 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV---SSMQIDCGDRGFSFQKSG 131 E + + +L + FS L D +GVD V + SSMQ+D RGFSF+ G Sbjct: 120 AELVERSAGRLTLVEDRFSHLADVCAAQGVDAVDGVVMDVGVSSMQLDQAGRGFSFRLDG 179 Query: 132 PLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 PLDMRM +G +A+DVV +A+ DL I+ +LGEE+ + R+A AIV RQ PF TT+ L Sbjct: 180 PLDMRMGQAGPTAADVVARASEADLADIIYLLGEERHSRRVARAIVADRQETPFTTTRAL 239 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + L+ + V SK IHPATR+FQALRIFVN E+EEL L +AE+ LK GG L+VVSFH Sbjct: 240 ADLVGRVV-RSKPGDIHPATRTFQALRIFVNEELEELQTALTAAERVLKPGGRLVVVSFH 298 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+VK F A RS RH+ FQ +T++ VV +++VA N R+RSAKL Sbjct: 299 SLEDRIVKNFLAERSKTGGGSRHLPEVAQTAPSFQLLTRRPVVAGEDEVAHNPRARSAKL 358 Query: 312 RAGMRTVERSIEDDSFVHLPRLPTLSQ 338 RA RT + +DD PRL + + Sbjct: 359 RAAERTSAPAHKDDQSSSWPRLSDVMR 385 >gi|209884374|ref|YP_002288231.1| S-adenosyl-methyltransferase MraW [Oligotropha carboxidovorans OM5] gi|262824708|sp|B6JCF0|RSMH_OLICO RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|209872570|gb|ACI92366.1| S-adenosyl-methyltransferase MraW [Oligotropha carboxidovorans OM5] Length = 333 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 147/334 (44%), Positives = 207/334 (61%), Gaps = 9/334 (2%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRD 67 MS+A+ H+ VL + + L P G + +DATFGAGGYSR G+ VI +DRD Sbjct: 1 MSAAVS----RHISVLGREAVEFLAPRAGGIYVDATFGAGGYSRRILAVAGARVIGIDRD 56 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRG 124 A++ + + + + +L Q FSQL + + VDG+V D+GVSSMQ+D +RG Sbjct: 57 RTAIAEAFDLVEQAEGRLTLVQDRFSQLDEVCASQNAPQVDGIVMDIGVSSMQLDRAERG 116 Query: 125 FSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 FSF++ GPLDMRM G SA+DVV A+ KDL I+ I GEE+ + +A AIV+ RQ P Sbjct: 117 FSFRQDGPLDMRMGQEGASAADVVAVASEKDLANIIYIFGEERHSRAVARAIVRARQEKP 176 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 TT+ L+ ++ V+ N+ IHPATR+FQALRIFVN E++EL L ++E+ LK GG Sbjct: 177 ILTTKVLADIVASVVHTRPND-IHPATRTFQALRIFVNEELDELQSALHASERTLKPGGR 235 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 L+VV+FHSLEDR+VK F +R+ + RHM F+ +TK+ VV + ++A N Sbjct: 236 LVVVTFHSLEDRIVKNFINARASRGGGSRHMPDVERTAPSFEILTKRPVVADENEIAANP 295 Query: 305 RSRSAKLRAGMRTVERSIEDDSFVHLPRLPTLSQ 338 R+RSAKLRA RT S + D+ P L T+ + Sbjct: 296 RARSAKLRAAERTANASHDADTSFDWPTLRTVMK 329 >gi|302871361|ref|YP_003839997.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor obsidiansis OB47] gi|302574220|gb|ADL42011.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor obsidiansis OB47] Length = 307 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 126/309 (40%), Positives = 190/309 (61%), Gaps = 10/309 (3%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSC 73 + +H+PVLLE+ + L P + +DATFG GG+S+ + SN +IA+DRD A+ Sbjct: 1 MYEHMPVLLEESVFFLVTNPDGIYVDATFGLGGHSKRILEKLSNKGFLIAIDRDLEAIEL 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130 G+ + +K + ++FS+L + + G+ DG++FD GVSS+Q+D +RGFS+ + Sbjct: 61 GKRKLEVHK-NVKIVHSSFSKLDEVLKGLGIEKIDGILFDFGVSSLQLDKQERGFSYNQE 119 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM S ++A DVVN + KDL RI+ GEE+ A RIA AIV+RR P +TT Sbjct: 120 AFLDMRMDTTSKLTAYDVVNFYSEKDLERIIREYGEERFARRIAKAIVERRSKKPIETTT 179 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 +LS+LI V K+ HPA R+FQA+RI VN+E++E+ L + + L++GG + +S Sbjct: 180 ELSNLISSLVPRPKDGS-HPAQRTFQAIRIEVNSELDEIKIALEKSLRFLRSGGRICAIS 238 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK+FF S + + + I ITKK + P++E++ N+RS S Sbjct: 239 FHSLEDRIVKEFFKFHSLECVCPKDIPICVCGKKKELNIITKKPITPSKEEIEKNKRSHS 298 Query: 309 AKLRAGMRT 317 AKLR + Sbjct: 299 AKLRVAEKV 307 >gi|229013103|ref|ZP_04170268.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus mycoides DSM 2048] gi|229134728|ref|ZP_04263537.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus BDRD-ST196] gi|228648774|gb|EEL04800.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus cereus BDRD-ST196] gi|228748357|gb|EEL98217.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus mycoides DSM 2048] Length = 302 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 106/301 (35%), Positives = 163/301 (54%), Gaps = 9/301 (2%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDY 81 +++ + L+ P +D T G GG+S G +IA D+D A+ +E Y Sbjct: 1 MKETVDGLDIKPSGTYVDCTLGGGGHSSYLLSQLTDGGKLIAFDQDEIAIQNAKEKFSSY 60 Query: 82 KEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138 EQF ++ F L + + + G VDG++FDLGVSS Q+D +RGFS+ PLDMRM Sbjct: 61 GEQFVTVKSNFRYLSEKLHELGITEVDGILFDLGVSSPQLDTPERGFSYHHDAPLDMRMD 120 Query: 139 CSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK 197 ++A DVVN + + L RI GEEK + +I I R++ +TT +L LI++ Sbjct: 121 QDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQITRKIEAYRENKAIETTGELVELIKE 180 Query: 198 TVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 + ++ HPA R FQA+RI VN+E++ + L SA +K GG + V++FHSLEDR Sbjct: 181 GIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIDMVKPGGRVSVITFHSLEDR 240 Query: 257 LVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 + K F S + I + + IT+K ++P+ ++ N R+RSAKLR Sbjct: 241 ICKTTFKRNSTTPQLPQGLPIIPDEFKPKLKLITRKPILPSDIELEENNRARSAKLRIAE 300 Query: 316 R 316 + Sbjct: 301 K 301 >gi|315304096|ref|ZP_07874497.1| S-adenosyl-methyltransferase MraW [Listeria ivanovii FSL F6-596] gi|313627537|gb|EFR96269.1| S-adenosyl-methyltransferase MraW [Listeria ivanovii FSL F6-596] Length = 312 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 101/311 (32%), Positives = 174/311 (55%), Gaps = 9/311 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H VLL + + +L P + +DAT G G+S ++ A D+D A+ Sbjct: 1 MFKHETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + Y ++ + ++ F +++ + ++G VDG+++DLGVSS Q+D +RGFS+ + Sbjct: 61 AKIKLAAYSDKVTFVKSNFRYMKEALNERGISEVDGILYDLGVSSPQLDERERGFSYHQD 120 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM ++A VVN+ + +DL RI GEEK + +IA I +RR+ P +TT Sbjct: 121 AALDMRMDREQELTAKIVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTG 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I+ + ++ HP R+FQA+RI VN+E+ + L A + GG + V+ Sbjct: 181 ELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLITPGGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F + G + + + + + F+ T+K +VP++E++ N R+R Sbjct: 241 TFHSLEDRITKHLFQEATKGPDLPLGLPVIPDEYKPDFKLATRKPIVPSEEELEQNNRAR 300 Query: 308 SAKLRAGMRTV 318 SAKLR + + Sbjct: 301 SAKLRVIEKII 311 >gi|254719470|ref|ZP_05181281.1| S-adenosyl-methyltransferase MraW [Brucella sp. 83/13] gi|265984477|ref|ZP_06097212.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella sp. 83/13] gi|306839249|ref|ZP_07472066.1| S-adenosyl-methyltransferase MraW [Brucella sp. NF 2653] gi|264663069|gb|EEZ33330.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella sp. 83/13] gi|306405796|gb|EFM62058.1| S-adenosyl-methyltransferase MraW [Brucella sp. NF 2653] Length = 346 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 165/326 (50%), Positives = 217/326 (66%), Gaps = 6/326 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 HVPVL+ ++I L PAPG VI+D TFGAGGY+R + G++VIA+DRDP A+ G+ + Sbjct: 18 HVPVLIAEMIDALKPAPGAVIVDGTFGAGGYTRRILETGADVIAIDRDPTAIEAGRAMEK 77 Query: 80 DYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++ + +L ++ FS L + V VDGVV D+GVSSMQID +RGFSFQK GPLD Sbjct: 78 EFPGRLNLVESRFSALDEAVARMSGAGKKVDGVVLDIGVSSMQIDEAERGFSFQKDGPLD 137 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRMS G SA+D VN+ DL RI LGEE+ A RIA I KRR + PF T DL++ Sbjct: 138 MRMSSRGASAADAVNRLKTGDLARIFNFLGEERHAGRIARMIEKRRAAKPFTRTLDLANA 197 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 I+ V + +RIHPATR FQALR++VN+E+ ELA+ L +AE+ +K GG L+VV+FHSLE Sbjct: 198 IETLVGRNPKDRIHPATRVFQALRVYVNDELGELARALLAAERIIKPGGRLVVVTFHSLE 257 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 DR+VK+FFA R+G RHM ++ F K V PT E+ N R+RSAKLRAG Sbjct: 258 DRMVKRFFADRAGGSAGSRHMPETHMRLPSFTPAVKGAVGPTPEEEERNPRARSAKLRAG 317 Query: 315 MRTVERSIEDD-SFVHLPRLPTLSQF 339 +RT +EDD S LP+LP ++ Sbjct: 318 IRTENPPLEDDLSLFGLPKLPETNEL 343 >gi|312134653|ref|YP_004001991.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor owensensis OL] gi|311774704|gb|ADQ04191.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor owensensis OL] Length = 307 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 123/309 (39%), Positives = 190/309 (61%), Gaps = 10/309 (3%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSC 73 + +H+PVLLE+ + L P + +DATFG GG+S+ + S+ +IA+DRD A+ Sbjct: 1 MYEHIPVLLEESVFFLVTNPDGIYVDATFGLGGHSKRILEKLSDKGFLIAIDRDLEAIEL 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130 G+ ++ +K + ++FS++ + + G+ DG++FD GVSS+Q+D +RGFS+ K Sbjct: 61 GKRKLKVHK-NVKIVHSSFSKVDEVLKGLGIEKIDGILFDFGVSSLQLDKQERGFSYNKE 119 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM S ++A DVVN + KDL +I+ GEE+ A RIA AIV+RR P +TT Sbjct: 120 AFLDMRMDTTSKLTAYDVVNFYSQKDLEKIIREYGEERFARRIAKAIVERRSKKPIETTT 179 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 +LS+LI V K+ HPA R+FQA+RI VN E++E+ L + + L++GG + +S Sbjct: 180 ELSNLISSLVPRPKDGS-HPAQRTFQAIRIEVNGELDEIKIALEKSLRFLRSGGRICAIS 238 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK+FF S + + + + ITKK + P++E++ N+RS S Sbjct: 239 FHSLEDRIVKEFFKFHSLECVCPKDIPVCVCGKKKELNIITKKPITPSKEEIEKNKRSHS 298 Query: 309 AKLRAGMRT 317 AKLR + Sbjct: 299 AKLRVAEKV 307 >gi|150397291|ref|YP_001327758.1| S-adenosyl-methyltransferase MraW [Sinorhizobium medicae WSM419] gi|150028806|gb|ABR60923.1| S-adenosyl-methyltransferase MraW [Sinorhizobium medicae WSM419] Length = 362 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 183/323 (56%), Positives = 229/323 (70%), Gaps = 1/323 (0%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+PVLLE+V+A L PAPGKVILD TFGAGGY+ + G+ VIALDRDP A++ GQ + Sbjct: 40 HIPVLLEEVLAALEPAPGKVILDGTFGAGGYASAILDAGAEVIALDRDPTAIAAGQSMVS 99 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 + SL + FS L ++ P +G+DGVV D+GVSSMQID +RGFSFQK GPLDMRMS Sbjct: 100 ASGGRLSLIHSRFSGLAEHAPAEGLDGVVLDVGVSSMQIDEAERGFSFQKKGPLDMRMSA 159 Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199 +G+SA+DVVN+A V DL RI G LGEEKQA RIA I KRR APF+TT+DL++LI+ Sbjct: 160 AGVSAADVVNRAKVSDLIRIFGFLGEEKQAGRIARTIEKRRAEAPFETTRDLANLIETVT 219 Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259 ++IHPATR FQALRIFVN+E+ ELA L +AE+ALK GG L+VVSFHSLEDR+VK Sbjct: 220 PRKAKDKIHPATRVFQALRIFVNDELGELAAALFAAERALKPGGRLVVVSFHSLEDRIVK 279 Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319 FF RSGK RH+ A A F + K +V + E+ + N R+RSAKLRAG+RT Sbjct: 280 TFFQDRSGKAGGSRHLPLVTARAATFAPVGKPMVSASDEEASRNPRARSAKLRAGIRTAA 339 Query: 320 RSIEDD-SFVHLPRLPTLSQFRG 341 S D S +LP L +L++ G Sbjct: 340 PSPGADLSIFNLPELASLARLGG 362 >gi|332982167|ref|YP_004463608.1| S-adenosyl-methyltransferase MraW [Mahella australiensis 50-1 BON] gi|332699845|gb|AEE96786.1| S-adenosyl-methyltransferase MraW [Mahella australiensis 50-1 BON] Length = 312 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 117/306 (38%), Positives = 168/306 (54%), Gaps = 9/306 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H PVL+E+V+ ++ G + +D T G GG++ C+ +I +D+D A++ E Sbjct: 6 HKPVLVEEVMQYMSCRKGGIYIDGTIGGGGHALEICRRIDGDGLLIGIDKDDEALAHAAE 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 T+++Y L + F ++ V VDGV+ DLGVSS Q+D RGFS+ L Sbjct: 66 TLKEYSSCVRLIKGDFRYMKALVNGIEVNEVDGVLLDLGVSSHQLDDAGRGFSYNAEAVL 125 Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + +A DVVN + K L I+ GEE+ A RIA IVK RQ P +TT L Sbjct: 126 DMRMDKQQLLTAKDVVNTYDEKRLYEIIKDYGEERWAKRIASFIVKERQRYPIETTGQLV 185 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I++ + + + HPA R+FQA+RI VN+E+ + +GL A LK GG L V+SFH Sbjct: 186 EVIKRAIPAAARREGPHPARRTFQAIRIEVNDELNSIKEGLIQAMDCLKPGGRLCVISFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDRLVK F + + V +TKK V+ T ++V N R+RSAK Sbjct: 246 SLEDRLVKDTFRRWQNPCTCPPDTPLCVCGNKPVAAIVTKKPVIATPDEVESNPRARSAK 305 Query: 311 LRAGMR 316 LR + Sbjct: 306 LRVCEK 311 >gi|237738334|ref|ZP_04568815.1| S-adenosyl-methyltransferase mraW [Fusobacterium mortiferum ATCC 9817] gi|229420214|gb|EEO35261.1| S-adenosyl-methyltransferase mraW [Fusobacterium mortiferum ATCC 9817] Length = 313 Score = 381 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 110/306 (35%), Positives = 170/306 (55%), Gaps = 10/306 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H+PVL + I L V LD T G GG+S K ++I++D+D A+ ++ Sbjct: 9 HIPVLYRECIDNLVINKDGVYLDCTLGGGGHSEGILKELSDKGHLISIDQDQQAIDFAKK 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + Y +++ +F+ F L + G VDG++ D+GVSS Q+D +RGFS++ L Sbjct: 69 RLEKYGKKWQVFKNNFENLDMVLYMAGYDKVDGILMDIGVSSTQLDDPERGFSYRYDTRL 128 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ S +SA +VVN+ + L +I+ GEE+ A +IA I + R +TT +L Sbjct: 129 DMRMNRSNPLSAYEVVNEYPEEKLAKIIFEYGEERNARKIAKFICEARTEKNIETTGELV 188 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++I++ + + HPA ++FQA+RI VN E+E L + + A +LK GG L +++FHS Sbjct: 189 AIIKRAYP--ERAQKHPAKKTFQAIRIEVNRELEVLEKAIDKAVDSLKVGGRLGIITFHS 246 Query: 253 LEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDRLVK F + I A + IT+K +VP E+V FN R+ S+KL Sbjct: 247 LEDRLVKTKFKDLATACKCPPGLPICVCGGKAKVKLITRKPIVPEGEEVEFNNRAHSSKL 306 Query: 312 RAGMRT 317 R R Sbjct: 307 RVVERI 312 >gi|260584184|ref|ZP_05851932.1| S-adenosyl-methyltransferase MraW [Granulicatella elegans ATCC 700633] gi|260158810|gb|EEW93878.1| S-adenosyl-methyltransferase MraW [Granulicatella elegans ATCC 700633] Length = 313 Score = 381 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 105/312 (33%), Positives = 174/312 (55%), Gaps = 11/312 (3%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74 + HV VLL + + L P + +D T G G+S ++ D+D A+ Sbjct: 1 MFKHVTVLLHETVDNLEVKPDGIYVDCTLGGAGHSEYLLGQLTTGHLYCFDQDMNAIDNA 60 Query: 75 QETMRDYKE--QFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK 129 + ++++ + + + A F +Q + + G VDG+++DLGVSS Q+D +RGFS+ + Sbjct: 61 KIRLKNFIDEGKVTFIHANFRMIQKKLNELGIKKVDGILYDLGVSSPQLDQIERGFSYHQ 120 Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 + LDMRM + ++A +++N+ + +L RI GEEK + +IA I + RQ +TT Sbjct: 121 NAILDMRMDQTAPLTAKEIINEWSYDELVRIFYRYGEEKFSKQIARNIERIRQDHGIETT 180 Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L +I+ ++ + + HPA R FQA+RI VN+E+ + L A L+ GG + V Sbjct: 181 GELVDIIRDSIPAAARRKGGHPAKRIFQAVRIAVNDELAAVEDSLEQAFDLLEVGGRISV 240 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 +SFHSLEDR+VK F +S + ++P A F+ IT+K ++PT+E++ N R Sbjct: 241 ISFHSLEDRIVKTMFKQQSTVEQGPKNLPILPGQLESANFKLITRKPILPTEEEMQENSR 300 Query: 306 SRSAKLRAGMRT 317 S+SAKLR R Sbjct: 301 SQSAKLRVIERV 312 >gi|90418202|ref|ZP_01226114.1| putative S-adenosyl-methyltransferase mraW [Aurantimonas manganoxydans SI85-9A1] gi|90337874|gb|EAS51525.1| putative S-adenosyl-methyltransferase mraW [Aurantimonas manganoxydans SI85-9A1] Length = 348 Score = 381 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 158/328 (48%), Positives = 209/328 (63%), Gaps = 7/328 (2%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77 H+PVLL +V+ L P PG+VI+D TFGAGGY+R+ G++VIA+DRDP A++ + Sbjct: 17 ARHIPVLLAEVLEALAPKPGEVIVDGTFGAGGYTRAILDAGADVIAIDRDPAAIATARGL 76 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 Y + + + F LQ V + VDG+V D+GVSSMQ+D +RGFSFQK G Sbjct: 77 AEGYDGRLAPVEGRFGDLQRIVETQAEAAGGRVDGIVLDVGVSSMQLDEAERGFSFQKDG 136 Query: 132 PLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 PLDMRMS +G SA+DVVN+ V DL R++GILGEEKQA R+A AI RR PF T DL Sbjct: 137 PLDMRMSGAGPSAADVVNRLKVGDLLRVIGILGEEKQAGRVARAIEARRLEQPFTRTLDL 196 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +I K V ++I PATRSFQ LRIFVN+E+ ELA+ L +AE+ LK GG L++VSFH Sbjct: 197 AGVIGKVVGRGPKDKIDPATRSFQGLRIFVNDELGELARALVAAERVLKPGGRLVIVSFH 256 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+VK+F RS RH+ F + + V T + N R+RSAKL Sbjct: 257 SLEDRIVKRFLRDRSSPPSGSRHLPDMAPATQTFVARNR-AVGATDAEAERNPRARSAKL 315 Query: 312 RAGMRTVERSIEDDSFVHLPRLPTLSQF 339 RAG+RT E + +D + LP+L+ Sbjct: 316 RAGIRTAEPARQDADELGFAGLPSLADL 343 >gi|262831477|sp|A6UB93|RSMH_SINMW RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 341 Score = 381 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 183/323 (56%), Positives = 229/323 (70%), Gaps = 1/323 (0%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+PVLLE+V+A L PAPGKVILD TFGAGGY+ + G+ VIALDRDP A++ GQ + Sbjct: 19 HIPVLLEEVLAALEPAPGKVILDGTFGAGGYASAILDAGAEVIALDRDPTAIAAGQSMVS 78 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 + SL + FS L ++ P +G+DGVV D+GVSSMQID +RGFSFQK GPLDMRMS Sbjct: 79 ASGGRLSLIHSRFSGLAEHAPAEGLDGVVLDVGVSSMQIDEAERGFSFQKKGPLDMRMSA 138 Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199 +G+SA+DVVN+A V DL RI G LGEEKQA RIA I KRR APF+TT+DL++LI+ Sbjct: 139 AGVSAADVVNRAKVSDLIRIFGFLGEEKQAGRIARTIEKRRAEAPFETTRDLANLIETVT 198 Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259 ++IHPATR FQALRIFVN+E+ ELA L +AE+ALK GG L+VVSFHSLEDR+VK Sbjct: 199 PRKAKDKIHPATRVFQALRIFVNDELGELAAALFAAERALKPGGRLVVVSFHSLEDRIVK 258 Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319 FF RSGK RH+ A A F + K +V + E+ + N R+RSAKLRAG+RT Sbjct: 259 TFFQDRSGKAGGSRHLPLVTARAATFAPVGKPMVSASDEEASRNPRARSAKLRAGIRTAA 318 Query: 320 RSIEDD-SFVHLPRLPTLSQFRG 341 S D S +LP L +L++ G Sbjct: 319 PSPGADLSIFNLPELASLARLGG 341 >gi|332362961|gb|EGJ40750.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus sanguinis SK49] Length = 316 Score = 381 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 101/319 (31%), Positives = 171/319 (53%), Gaps = 15/319 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 M++ H H+ VLL + + L P + +DAT G G+S ++ A D Sbjct: 1 MTNEFH-----HITVLLHETVDQLAVKPDGIYVDATLGGAGHSEYLLSQLGDEGHLYAFD 55 Query: 66 RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120 +D A+ ++ + Y E+ + + F L+ + + GV DG+ +DLGVSS Q+D Sbjct: 56 QDQTAIDNAKKRLAPYIERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQ 115 Query: 121 GDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS+++ PLDMRM+C ++A +VVN + +DL RI GE+K + +IA I + Sbjct: 116 RERGFSYKQDAPLDMRMNCDAALTAFEVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQA 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R P +TT +L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A Sbjct: 176 RSVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDL 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L G + V++FHSLEDRL K+ F S + + + +++K ++P++E Sbjct: 236 LAVDGRIAVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKLELVSRKPILPSKE 295 Query: 299 DVAFNRRSRSAKLRAGMRT 317 ++ N R+ SAKLR + Sbjct: 296 ELESNNRAHSAKLRVARKI 314 >gi|167647637|ref|YP_001685300.1| S-adenosyl-methyltransferase MraW [Caulobacter sp. K31] gi|263445765|sp|B0T839|RSMH_CAUSK RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|167350067|gb|ABZ72802.1| S-adenosyl-methyltransferase MraW [Caulobacter sp. K31] Length = 322 Score = 381 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 146/320 (45%), Positives = 198/320 (61%), Gaps = 3/320 (0%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDP 68 + A + HV VLL +V+A L PG +++D TFGAGGY+R+ G++V A DRDP Sbjct: 4 LEPAKNPEGASHVSVLLGEVVAALASGPGDMVIDGTFGAGGYTRAILATGASVTAFDRDP 63 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 E +F L Q FSQ+ +Y+ D VDGV DLGVSSMQ+D +RGFSF Sbjct: 64 SVQRFAAE-FSATDGRFRLIQDRFSQITEYLEDASVDGVTLDLGVSSMQLDEAERGFSFM 122 Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 + GPLDMRM G +A+D+VN + +L RIL + GEE + RIA I+KRR+ PF T Sbjct: 123 RDGPLDMRMGADGPTAADLVNDLDHTELARILYVYGEEHASRRIASFIIKRREERPFTRT 182 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 DL+ +I++ + K ++HPATRSFQ LRI VN E++EL GL +AE+ LK GG L VV Sbjct: 183 LDLAHVIERALGGRKGAKVHPATRSFQGLRIAVNAELDELEAGLLAAERVLKPGGRLAVV 242 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 +FHSLEDR+VK F A R+G+ +P P FQ I+ K + P + ++A N R+ Sbjct: 243 TFHSLEDRIVKNFLAERAGRTPGGSRHLPPVEAGAPPSFQLISSKAIAPGEAELAVNPRA 302 Query: 307 RSAKLRAGMRTVERSIEDDS 326 RS+KLRA +RT + S Sbjct: 303 RSSKLRAAVRTTAPVWSEAS 322 >gi|223933600|ref|ZP_03625580.1| S-adenosyl-methyltransferase MraW [Streptococcus suis 89/1591] gi|253752421|ref|YP_003025562.1| S-adenosyl-methyltransferase MraW [Streptococcus suis SC84] gi|253754247|ref|YP_003027388.1| S-adenosyl-methyltransferase MraW [Streptococcus suis P1/7] gi|253756181|ref|YP_003029321.1| S-adenosyl-methyltransferase MraW [Streptococcus suis BM407] gi|302024366|ref|ZP_07249577.1| S-adenosyl-methyltransferase MraW [Streptococcus suis 05HAS68] gi|330833363|ref|YP_004402188.1| S-adenosyl-methyltransferase MraW [Streptococcus suis ST3] gi|262827260|sp|C6GW75|RSMH_STRS4 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262827309|sp|C5VZR6|RSMH_STRSE RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262827338|sp|C6GPU1|RSMH_STRSX RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262831434|sp|A4VX71|RSMH_STRSY RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262831441|sp|A4W3H4|RSMH_STRS2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|223897726|gb|EEF64107.1| S-adenosyl-methyltransferase MraW [Streptococcus suis 89/1591] gi|251816710|emb|CAZ52352.1| S-adenosyl-methyltransferase MraW [Streptococcus suis SC84] gi|251818645|emb|CAZ56480.1| S-adenosyl-methyltransferase MraW [Streptococcus suis BM407] gi|251820493|emb|CAR47246.1| S-adenosyl-methyltransferase MraW [Streptococcus suis P1/7] gi|319758827|gb|ADV70769.1| S-adenosyl-methyltransferase MraW [Streptococcus suis JS14] gi|329307586|gb|AEB82002.1| S-adenosyl-methyltransferase MraW [Streptococcus suis ST3] Length = 316 Score = 381 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 105/309 (33%), Positives = 167/309 (54%), Gaps = 10/309 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 +H VLL + + +L+ P + +DAT G G+S G ++ A D+D A+ Sbjct: 6 NHTTVLLHETVDMLDIKPNGIYVDATLGGAGHSEYLLSQLTDGGHLYAFDQDQTAIDHAH 65 Query: 76 ETMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130 + Y K Q + + F L+ + + GV DG+ +DLGVSS Q+D +RGFS+++ Sbjct: 66 IRLASYIEKGQVTFIRDNFRNLKTRLAELGVTEIDGICYDLGVSSPQLDERERGFSYKQD 125 Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM+ G ++A DVVN + DL RI GE+K + +IA I + R P +TT Sbjct: 126 APLDMRMNREGHLTAYDVVNNYDYHDLVRIFFKYGEDKFSKQIARKIEQARAVKPIETTT 185 Query: 190 DLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ LI+ + + HPA + FQA+RI VN+E+ + ++ A L G + V+ Sbjct: 186 ELAELIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDLLALDGRISVI 245 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 +FHSLEDRL K+ F S + + A + + +K ++P+QE++ N R+ S Sbjct: 246 TFHSLEDRLTKQLFKEASTIDVPKGLPFIPDDLKAPLELVNRKPILPSQEELEANNRAHS 305 Query: 309 AKLRAGMRT 317 AKLR + Sbjct: 306 AKLRVAKKV 314 >gi|222151001|ref|YP_002560154.1| S-adenosyl-methyltransferase MraW [Macrococcus caseolyticus JCSC5402] gi|263456379|sp|B9EB47|RSMH_MACCJ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|222120123|dbj|BAH17458.1| S-adenosyl-methyltransferase MraW [Macrococcus caseolyticus JCSC5402] Length = 310 Score = 381 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 108/308 (35%), Positives = 168/308 (54%), Gaps = 10/308 (3%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74 + HV VLLE+ + LN P + +D T G G+S K ++I++D+D A+ Sbjct: 1 MFHHVTVLLEETVDQLNIDPNGIYVDCTLGGAGHSLYLVKQLQEGHLISIDQDQTAIDNA 60 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++DY ++ + + F L D + + VDG+++DLGVSS Q+D G+RGFS+ + Sbjct: 61 HIILKDYLDKVTFVKDNFRNLSDILAHLDIQKVDGILYDLGVSSPQLDVGERGFSYHQEA 120 Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM + +SA +VVN + L I GEEK + +IA I R+ P +TT + Sbjct: 121 KLDMRMDQTQTLSAYEVVNTWPYEKLVSIFFRYGEEKFSKQIARKIEAERELKPIETTTE 180 Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I+ + ++ HPA R FQA+RI VN+E+ + A ++K GG + V++ Sbjct: 181 LVEIIKAAIPAPARRTGGHPAKRVFQAIRIAVNDELGAFESSIEQAIDSVKPGGRISVIT 240 Query: 250 FHSLEDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 FHSLEDRL K+ F S R ++P P + IT+K + + E++ N R+R Sbjct: 241 FHSLEDRLCKQVFQEYSKGPDIPRGLPVVPPEYQPK-LKKITRKPITSSNEELEHNNRAR 299 Query: 308 SAKLRAGM 315 SAKLR Sbjct: 300 SAKLRVVE 307 >gi|254476257|ref|ZP_05089643.1| S-adenosyl-methyltransferase MraW [Ruegeria sp. R11] gi|214030500|gb|EEB71335.1| S-adenosyl-methyltransferase MraW [Ruegeria sp. R11] Length = 330 Score = 381 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 157/328 (47%), Positives = 210/328 (64%), Gaps = 6/328 (1%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRD 67 M++ + G HVPVLL ++A + P G+ LD TFGAGGYSR + G+ +VI +DRD Sbjct: 1 MTTDRQTSSGPHVPVLLRPLLAAVAPVSGR-WLDGTFGAGGYSRGLLEAGADHVIGVDRD 59 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 P A Q+ + DY + + Q FS++ +Y D +DGVV DLGVSSMQ+D +RGFSF Sbjct: 60 PLAFEMAQDWIGDYDGRLTFQQGVFSRMDEYAQD--LDGVVLDLGVSSMQLDMAERGFSF 117 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRMS G SA+D+V + + L IL + GEE+ + RIA AIVK R AP T Sbjct: 118 MRDGPLDMRMSQDGPSAADLVAELDEAALADILFMFGEERASRRIARAIVKARTEAPITT 177 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T L+ +I+ + SK + HPATRSFQ LRI VN E EEL +GL +AE+ALK GGLL V Sbjct: 178 TLQLAGIIESCLPRSKPGQSHPATRSFQGLRIAVNAEYEELFEGLLAAERALKPGGLLAV 237 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPS-NAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+FHS+EDR+VK+FF R+GK P P+ F +T+K V P E++A N RS Sbjct: 238 VTFHSIEDRMVKRFFQHRAGKTGRANRYAPEQEETPSQFTLVTRKAVGPDDEELAENPRS 297 Query: 307 RSAKLRAGMRTVERSIEDDSF-VHLPRL 333 RSA+LR G RT +E + + +P+L Sbjct: 298 RSARLRVGRRTDAAPVEISAKDIGMPQL 325 >gi|319947571|ref|ZP_08021801.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus australis ATCC 700641] gi|319746259|gb|EFV98522.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus australis ATCC 700641] Length = 316 Score = 381 bits (979), Expect = e-104, Method: Composition-based stats. Identities = 108/319 (33%), Positives = 169/319 (52%), Gaps = 15/319 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 MS H HV VLL + I +L+ P + +DAT G G+S ++ A D Sbjct: 1 MSKEFH-----HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSQLSEKGHLYAFD 55 Query: 66 RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120 +D A+ ++ + Y E+ + + F LQ + + GV DG+ +DLGVSS Q+D Sbjct: 56 QDQHAIDNAEKRLAPYVEKGMVTFIKDNFRNLQARLQELGVNEIDGICYDLGVSSPQLDE 115 Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 RGFS++K PLDMRM+ ++A DVVN + DL RI GE+K + +IA I + Sbjct: 116 RSRGFSYKKDAPLDMRMNQEASLTAYDVVNNYDYHDLVRIFFKYGEDKFSKQIARKIEQA 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R P +TT +L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A Sbjct: 176 RAVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDL 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L GG + V++FHSLEDRL K+ F S + + +++K ++P+QE Sbjct: 236 LAVGGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPEDLKPKMELVSRKPILPSQE 295 Query: 299 DVAFNRRSRSAKLRAGMRT 317 ++ N R+ SAKLR + Sbjct: 296 ELEKNNRAHSAKLRVARKI 314 >gi|255282562|ref|ZP_05347117.1| S-adenosyl-methyltransferase MraW [Bryantella formatexigens DSM 14469] gi|255266855|gb|EET60060.1| S-adenosyl-methyltransferase MraW [Bryantella formatexigens DSM 14469] Length = 312 Score = 381 bits (979), Expect = e-104, Method: Composition-based stats. Identities = 100/307 (32%), Positives = 172/307 (56%), Gaps = 9/307 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H VLL + I LN P + +D T G GG+S C+ ++ +D+D A++ Sbjct: 4 KHTSVLLGETIDALNINPDGIYVDGTLGGGGHSYEICRRLSGRGRLVGIDQDAAAIAAAS 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + ++K++ ++ ++ + ++++ + GV DG++ DLGVSS Q+D DRGF++++ P Sbjct: 64 ERLGEFKDKVTIIRSNYCEMRERLAGIGVTGADGIILDLGVSSYQLDTADRGFTYREDAP 123 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM +A D+VN + +L RI+ GE++ A IA IV+ R+ P +TT +L Sbjct: 124 LDMRMDQRQTRTAKDIVNGYSEMELYRIIRDYGEDRFAKNIAKHIVQAREEKPLETTGEL 183 Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+ + + HPA ++FQA+RI +NNE+ L+ L + L G + +++F Sbjct: 184 IHVIKAAIPMKVRAVGGHPAKKTFQAIRIELNNELGVLSDSLDDMIELLNNKGRICIITF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK F + + + + +T+K ++P +E++ N RS+SA Sbjct: 244 HSLEDRIVKNAFRKNENPCICPKEFPVCVCGRKPKGRVLTRKPILPGEEEMKENSRSKSA 303 Query: 310 KLRAGMR 316 KLR R Sbjct: 304 KLRVFER 310 >gi|331265736|ref|YP_004325366.1| S-adenosyl-methyltransferase [Streptococcus oralis Uo5] gi|326682408|emb|CBZ00025.1| S-adenosyl-methyltransferase [Streptococcus oralis Uo5] Length = 316 Score = 381 bits (979), Expect = e-104, Method: Composition-based stats. Identities = 106/319 (33%), Positives = 172/319 (53%), Gaps = 15/319 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M+ H HV VLL + I +L+ P + +DAT G G+S ++ A D Sbjct: 1 MTKEFH-----HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFD 55 Query: 66 RDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120 +D A+ Q+ + Y KE + + F LQ + + GV DG+ +DLGVSS Q+D Sbjct: 56 QDQNAIDNAQKRLAPYIEKEMVTFIKDNFRHLQARLQEAGVQEIDGICYDLGVSSPQLDQ 115 Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS++K PLDMRM+ ++A +VVN + DL RI GE+K + ++A I + Sbjct: 116 RERGFSYKKDAPLDMRMNQEASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQVARKIEQA 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R+ P +TT +L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A + Sbjct: 176 RELKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMEL 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L G + V++FHSLEDRL K+ F S + + + +++K ++P++E Sbjct: 236 LAVDGRISVITFHSLEDRLTKQLFKEASTVEIPKGLPFIPDELKPKMELVSRKPILPSKE 295 Query: 299 DVAFNRRSRSAKLRAGMRT 317 ++ N RS SAKLR + Sbjct: 296 ELEANNRSHSAKLRVARKI 314 >gi|220931744|ref|YP_002508652.1| S-adenosyl-methyltransferase MraW [Halothermothrix orenii H 168] gi|263456084|sp|B8CWI8|RSMH_HALOH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|219993054|gb|ACL69657.1| S-adenosyl-methyltransferase MraW [Halothermothrix orenii H 168] Length = 311 Score = 381 bits (979), Expect = e-104, Method: Composition-based stats. Identities = 114/310 (36%), Positives = 173/310 (55%), Gaps = 10/310 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 +H PVLL++ + L + +DAT G GG++ K ++ VI +DRD A+ + Sbjct: 3 EHKPVLLKESLDYLKCKENGIYIDATLGRGGHTEEIIKAINDRGLVIGIDRDHEAIESVK 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + ++ Y F+ + + VDG++FDLGVSS Q D +RGFS++K GP Sbjct: 63 KRLKKYSS-LRTVHDNFTNIPFILEQFNIKAVDGMLFDLGVSSPQFDNPERGFSYRKEGP 121 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + ++A +VN + ++LT I GEE+ ASRIA+ I+K RQ P +TT L Sbjct: 122 LDMRMDKNQELTAEYIVNNFSHEELTNIFKEYGEERWASRIANFIIKSRQHKPIKTTLQL 181 Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +++I+ + ++ HPA R+FQALRI N+E+ L + + K LK GG + ++SF Sbjct: 182 TTIIKDAIPASARRKGGHPARRTFQALRIATNDELNILKKTINHVVKFLKPGGRICIISF 241 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VKK F + + H + ITKK V P + +V N R+RSA Sbjct: 242 HSLEDRIVKKTFRELARDCVCPPDFPECVCDHKRKLKIITKKPVKPGENEVENNPRARSA 301 Query: 310 KLRAGMRTVE 319 +LR R + Sbjct: 302 RLRVAERVLN 311 >gi|239832317|ref|ZP_04680646.1| S-adenosyl-methyltransferase MraW [Ochrobactrum intermedium LMG 3301] gi|239824584|gb|EEQ96152.1| S-adenosyl-methyltransferase MraW [Ochrobactrum intermedium LMG 3301] Length = 347 Score = 381 bits (979), Expect = e-103, Method: Composition-based stats. Identities = 166/326 (50%), Positives = 215/326 (65%), Gaps = 6/326 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 HVPVL+ +VI L P G VI+D TFGAGGY+R + G++VIA+DRDP A+ G+ + Sbjct: 19 HVPVLIAEVIDALKPVAGAVIVDGTFGAGGYTRRILEAGADVIAIDRDPTAIEAGRVMEK 78 Query: 80 DYKEQFSLFQATFSQLQDYV-----PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + + +L ++ FS L D V VDGVV D+GVSSMQID +RGFSFQK GPLD Sbjct: 79 QFPGRLNLVESRFSALDDAVSTVKGAGSKVDGVVLDIGVSSMQIDEAERGFSFQKDGPLD 138 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRMS G SA+DVVN+ DL RI LGEE+ A RIA I KRR + PF T DL++ Sbjct: 139 MRMSKKGPSAADVVNRLKTGDLARIFNFLGEERHAGRIARMIDKRRTAQPFTRTLDLANA 198 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 I+ V + +RIHPATR FQALR++VN+E+ ELA+ L +AE+ LK GG L+VV+FHSLE Sbjct: 199 IETLVGRNPKDRIHPATRVFQALRVYVNDELGELARALLAAERILKPGGRLVVVTFHSLE 258 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 DR+VK++FA R+G RH+ ++ A F K V PT E+ N R+RSAKLRAG Sbjct: 259 DRMVKRYFADRAGGSAGSRHLPETHVRLASFTPAIKGAVGPTAEEEERNPRARSAKLRAG 318 Query: 315 MRTVERSIEDD-SFVHLPRLPTLSQF 339 RT +EDD S LP+LP ++ Sbjct: 319 TRTENPPLEDDLSLFGLPKLPETNEL 344 >gi|332638186|ref|ZP_08417049.1| 16S rRNA m(4)C1402 methyltranserfase [Weissella cibaria KACC 11862] Length = 314 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 123/312 (39%), Positives = 179/312 (57%), Gaps = 12/312 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73 T +HV VLL + I LN P V +DAT G GG+S+ + + D+D A++ Sbjct: 2 TEFNHVTVLLNEAIDNLNVKPDGVYVDATLGGGGHSQLLASRLTTGKLWSFDQDITAINY 61 Query: 74 GQETMRD--YKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQ 128 E + + + Q F L+ + + GV DG+V+DLGVSS Q D G RGFS+ Sbjct: 62 NTEHLAAELAAGKVAFIQNNFRNLKAALAEVGVTEIDGIVYDLGVSSPQFDDGQRGFSYN 121 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 PLDMRM S ++A VVN+ + DL RIL GEEK A +IA AI ++R P +T Sbjct: 122 YDAPLDMRMDQSQELNARTVVNEWDFHDLLRILSRYGEEKFAKQIARAIERQRAIKPIET 181 Query: 188 TQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T +L +I+ + + + HPA RSFQA+RI VN+E+ + + L A LK GG + Sbjct: 182 TFELVEVIKSAIPAAARRTGGHPAKRSFQAIRIAVNDELGVVEESLAQALDMLKVGGRIS 241 Query: 247 VVSFHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 V++FHSLEDRLVK F ++ +V A +IP P F+ +++K ++P++E++A N Sbjct: 242 VITFHSLEDRLVKTMFKEKTALPEVPAGLPIIPDEMQP-DFKLVSRKPILPSEEEMAENH 300 Query: 305 RSRSAKLRAGMR 316 R+ SAKLR R Sbjct: 301 RAHSAKLRVIER 312 >gi|315222117|ref|ZP_07864026.1| S-adenosyl-methyltransferase MraW [Streptococcus anginosus F0211] gi|315188743|gb|EFU22449.1| S-adenosyl-methyltransferase MraW [Streptococcus anginosus F0211] Length = 316 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 111/320 (34%), Positives = 175/320 (54%), Gaps = 17/320 (5%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 M++ H HV VLL + I L+ P V +DAT G G+S + A D Sbjct: 1 MTNEFH-----HVTVLLHETIDQLDIKPNGVYVDATLGGAGHSEYLLSKLGENGRLYAFD 55 Query: 66 RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120 +D A+ Q+ + Y EQ + F L+ + + GV DG+ +DLGVSS Q+D Sbjct: 56 QDQTAIEHAQKRLASYVEQGMVTFINDNFRHLKARLNELGVEEIDGICYDLGVSSPQLDE 115 Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS+++ PLDMRM+ ++A +VVNQ + DL RI GE+K + +IA I + Sbjct: 116 RERGFSYKQDAPLDMRMNREAKLTAYEVVNQYSYHDLVRIFFKYGEDKFSKQIARKIEQM 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R+ P +TT +L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A Sbjct: 176 REKKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDL 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297 L G + V++FHSLEDRL K+ F S +V IP + P + + +T+K ++P++ Sbjct: 236 LAVDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPEDLQPKM-KLVTRKPILPSK 294 Query: 298 EDVAFNRRSRSAKLRAGMRT 317 E++ N R+ SAKLR + Sbjct: 295 EELDNNNRAHSAKLRVAQKV 314 >gi|323127869|gb|ADX25166.1| S-adenosyl-methyltransferase MraW [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 337 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 107/328 (32%), Positives = 174/328 (53%), Gaps = 15/328 (4%) Query: 1 MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-- 58 ++ + K M+ H HV VLL + + +L+ P + +DAT G G+S Sbjct: 14 LKYGTIKVMTKEFH-----HVTVLLHETVDMLDIKPNGIYVDATLGGSGHSAYLLSKLSE 68 Query: 59 -SNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLG 112 ++ D+D A+ Q ++ Y K Q + + F L+ + GV DG+++DLG Sbjct: 69 QGHLYCFDQDQKAIDNAQLILKPYIDKGQVTFIKDNFRNLKARLEALGVTKIDGILYDLG 128 Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASR 171 VSS Q+D +RGFS+++ PLDMRM + ++A DVVN DL +I GE+K + + Sbjct: 129 VSSPQLDERERGFSYKQDAPLDMRMDRQAPLTAYDVVNTYPFNDLVKIFFKYGEDKFSKQ 188 Query: 172 IAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQ 230 IA I + R P +TT +L+ LI+ + + HPA + FQA+RI VN+E+ + Sbjct: 189 IARKIEQARAIKPIETTTELAELIKAAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADE 248 Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK 290 ++ A + L G + V++FHSLEDRL K+ F S + F+ +++ Sbjct: 249 SIQDAMELLALDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPEDMKPTFELVSR 308 Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMRTV 318 K ++P+QE++A N R+ SAKLR + Sbjct: 309 KPILPSQEELAANNRAHSAKLRVAKKIR 336 >gi|168333718|ref|ZP_02691971.1| S-adenosyl-methyltransferase MraW [Epulopiscium sp. 'N.t. morphotype B'] Length = 311 Score = 380 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 101/308 (32%), Positives = 165/308 (53%), Gaps = 9/308 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 +H+ VLL + I LN + +D T G G++ C+ ++ +D+D A++ + Sbjct: 4 NHISVLLNECIEGLNIKTNGIYVDGTLGGAGHATEICRHLNSEGTLVGIDQDAIAIATAE 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + + + + F+ + + + +DG++ DLGVSS Q+D +RGFS+ + Sbjct: 64 ARLAEAANRVLVIKXNFANVDAVLEELEIDKIDGMLLDLGVSSYQLDEAERGFSYMRDAK 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ SA DVVN +L ++ GEEK A RIA IV+ R S+ TT +L Sbjct: 124 LDMRMNQDAKFSAFDVVNSYTEDELAVVIKNFGEEKWARRIAKFIVEARASSSIDTTYEL 183 Query: 192 SSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+K + ++ HPA R+FQA+RI VN EI+ +A ++ L GG L +++F Sbjct: 184 VEIIKKAIPKAARLEGGHPAKRTFQAIRIEVNKEIDIIAPAIKEIVAHLNVGGRLAIITF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK F I + + ITKK ++P+++++ N RS+SA Sbjct: 244 HSLEDRIVKHTFRELENPCTCPSNFPICVCNKKSQVKVITKKPILPSEQELENNSRSKSA 303 Query: 310 KLRAGMRT 317 KLR + Sbjct: 304 KLRIVEKI 311 >gi|116334056|ref|YP_795583.1| SAM-dependent methyltransferase for cell envelope biogenesis [Lactobacillus brevis ATCC 367] gi|122269260|sp|Q03QH0|RSMH_LACBA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|116099403|gb|ABJ64552.1| SAM-dependent methyltransferase for cell envelope biogenesis [Lactobacillus brevis ATCC 367] Length = 314 Score = 380 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 117/310 (37%), Positives = 178/310 (57%), Gaps = 12/310 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76 HV VLL++ +A L P V +D T G GG+S+ + ++ A D+D A++ +E Sbjct: 5 HHVTVLLKEAVAGLAIKPTGVYVDCTLGGGGHSQRILEQLTTGHLYAFDQDQTAITYNEE 64 Query: 77 TMRDYKE--QFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++ Y + + + ++ F Q+Q + ++G VDG+++DLGVSS Q D DRGFS+Q Sbjct: 65 HLKTYLDAGKLTFIKSNFRQIQTELTERGITQVDGILYDLGVSSPQFDEADRGFSYQHDA 124 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S +SA VVN+ + DL RI GEEK A IA AI + R+ AP TT Sbjct: 125 PLDMRMDQSQKLSAWIVVNEWSFNDLLRIFHRYGEEKFAKPIARAIERHREQAPIDTTGQ 184 Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I++ + + + + HPA + FQA+RI VN+E+ L L A L G + V++ Sbjct: 185 LVEIIKEGIPAAARRHGGHPAKKVFQAIRIAVNDELGALEDSLEQAVSLLDVNGRISVIT 244 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 F SLEDRLVK F +S + + H IP + F+ + K ++P++E++A N R+ Sbjct: 245 FQSLEDRLVKTMFREQS-SLPELPHGIPVIPDNLQPDFKLVNHKPILPSEEELAVNHRAH 303 Query: 308 SAKLRAGMRT 317 SAKLR + Sbjct: 304 SAKLRILEKI 313 >gi|332358033|gb|EGJ35866.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus sanguinis SK1056] Length = 316 Score = 380 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 101/319 (31%), Positives = 170/319 (53%), Gaps = 15/319 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 M++ H H+ VLL + + L P + +DAT G G+S ++ A D Sbjct: 1 MTNEFH-----HITVLLHETVDQLAVKPDGIYVDATLGGAGHSEYLLSQLGDEGHLYAFD 55 Query: 66 RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120 +D A+ ++ + Y E+ + + F L+ + + GV DG+ +DLGVSS Q+D Sbjct: 56 QDQTAIDNAKKRLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQ 115 Query: 121 GDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS+++ PLDMRM+ ++A DVVN + +DL RI GE+K + +IA I + Sbjct: 116 RERGFSYKQDAPLDMRMNREAALTAFDVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQA 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R P +TT +L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A Sbjct: 176 RSVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGATDESIQQAIDL 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L G + V++FHSLEDRL K+ F S + + + +++K ++P++E Sbjct: 236 LAVDGRIAVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKLELVSRKPILPSKE 295 Query: 299 DVAFNRRSRSAKLRAGMRT 317 ++ N R+ SAKLR + Sbjct: 296 ELESNNRAHSAKLRVARKI 314 >gi|325686943|gb|EGD28967.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus sanguinis SK72] Length = 316 Score = 380 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 101/319 (31%), Positives = 170/319 (53%), Gaps = 15/319 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 M++ H H+ VLL + + L P + +DAT G G+S ++ A D Sbjct: 1 MTNEFH-----HITVLLHETVDQLAVKPDGIYVDATLGGAGHSEYLLSQLGDEGHLYAFD 55 Query: 66 RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120 +D A+ ++ + Y E+ + + F L+ + + GV DG+ +DLGVSS Q+D Sbjct: 56 QDQTAIDNAKKRLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQ 115 Query: 121 GDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS+++ PLDMRM+ ++A DVVN + +DL RI GE+K + +IA I + Sbjct: 116 RERGFSYKQDAPLDMRMNREAALTAFDVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQA 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R P +TT +L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A Sbjct: 176 RSIKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDL 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L G + V++FHSLEDRL K+ F S + + + +++K ++P++E Sbjct: 236 LAVDGRIAVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKLELVSRKPILPSKE 295 Query: 299 DVAFNRRSRSAKLRAGMRT 317 ++ N R+ SAKLR + Sbjct: 296 ELESNNRAHSAKLRVARKI 314 >gi|332976270|gb|EGK13132.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Desmospora sp. 8437] Length = 317 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 112/316 (35%), Positives = 179/316 (56%), Gaps = 9/316 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSC 73 + H V+ E+ + L PG + +D T G G+S + +I LD+D A+ Sbjct: 1 MFRHETVMREEAVDGLLVRPGGIYVDCTLGGAGHSLLIAERLGKDGILIGLDQDDRALQA 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + ++ Q L ++ F +L++ + G VDGV+FD+GVSS Q+D G+RGFS+Q Sbjct: 61 ASDRLKGADCQVHLIKSNFRRLEEVLGRLGLDRVDGVLFDIGVSSPQLDEGERGFSYQHD 120 Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM G ++A DVVN + +++ IL GEEK + RIA IV+ R P +TT Sbjct: 121 APLDMRMDPDGELTARDVVNDWSEEEIAHILFRYGEEKFSRRIARKIVETRSQYPIETTG 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+++I++ + ++ HPA RSFQA+RI VN+E+ +GL A ++L +GG + V+ Sbjct: 181 ELAAVIKEGIPAPARRKGPHPARRSFQAIRIAVNDELNAFEEGLEQAVRSLNSGGRVSVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K+FF ++ + + + + ITKK + P+ + N R+R Sbjct: 241 TFHSLEDRICKRFFQEKARGCICPPDFPVCTCGKTPELRIITKKSLQPSAAETGRNPRAR 300 Query: 308 SAKLRAGMRTVERSIE 323 SA+LR + E E Sbjct: 301 SARLRIAEKCEEGQRE 316 >gi|125718671|ref|YP_001035804.1| S-adenosyl-methyltransferase MraW [Streptococcus sanguinis SK36] gi|262827313|sp|A3CPZ9|RSMH_STRSV RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|125498588|gb|ABN45254.1| S-adenosyl-methyltransferase mraW, putative [Streptococcus sanguinis SK36] gi|324994098|gb|EGC26012.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus sanguinis SK678] Length = 316 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 100/319 (31%), Positives = 170/319 (53%), Gaps = 15/319 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 M++ H H+ VLL + + L P + +DAT G G+S ++ A D Sbjct: 1 MTNEFH-----HITVLLHETVDQLAVKPDGIYVDATLGGAGHSEYLLSQLGDEGHLYAFD 55 Query: 66 RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120 +D A+ ++ + Y E+ + + F L+ + + GV DG+ +DLGVSS Q+D Sbjct: 56 QDQTAIDNAKKRLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQ 115 Query: 121 GDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS+++ PLDMRM+ ++A +VVN + +DL RI GE+K + +IA I + Sbjct: 116 RERGFSYKQDAPLDMRMNREAALTAFEVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQA 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R P +TT +L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A Sbjct: 176 RSVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDL 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L G + V++FHSLEDRL K+ F S + + + +++K ++P++E Sbjct: 236 LAVDGRIAVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKLELVSRKPILPSKE 295 Query: 299 DVAFNRRSRSAKLRAGMRT 317 ++ N R+ SAKLR + Sbjct: 296 ELESNNRAHSAKLRVARKI 314 >gi|332366385|gb|EGJ44136.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus sanguinis SK355] Length = 316 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 100/319 (31%), Positives = 170/319 (53%), Gaps = 15/319 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 M++ H H+ VLL + + L P + +DAT G G+S ++ A D Sbjct: 1 MTNEFH-----HITVLLHETVDQLAVKPDGIYVDATLGGAGHSEYLLSQLGDEGHLYAFD 55 Query: 66 RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120 +D A+ ++ + Y E+ + + F L+ + + GV DG+ +DLGVSS Q+D Sbjct: 56 QDQTAIDNAKKRLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQ 115 Query: 121 GDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS+++ PLDMRM+ ++A +VVN + +DL RI GE+K + +IA I + Sbjct: 116 RERGFSYKQDAPLDMRMNRDAALTAFEVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQA 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R P +TT +L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A Sbjct: 176 RSVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDL 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L G + V++FHSLEDRL K+ F S + + + +++K ++P++E Sbjct: 236 LAVDGRIAVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKLELVSRKPILPSKE 295 Query: 299 DVAFNRRSRSAKLRAGMRT 317 ++ N R+ SAKLR + Sbjct: 296 ELESNNRAHSAKLRVARKI 314 >gi|322387149|ref|ZP_08060759.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus infantis ATCC 700779] gi|321141678|gb|EFX37173.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus infantis ATCC 700779] Length = 316 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 106/319 (33%), Positives = 173/319 (54%), Gaps = 15/319 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M+ H HV V+L + I +L+ P + +DAT G G+S ++ A D Sbjct: 1 MTKEFH-----HVTVMLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFD 55 Query: 66 RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120 +D A+ Q+ + Y E+ + + F L+D + D GV DG+ +DLGVSS Q+D Sbjct: 56 QDQNAIDNAQKRLAPYIEKGMVTFIKDNFRHLKDRLHDLGVTEIDGICYDLGVSSPQLDQ 115 Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS++K+ PLDMRM+ ++A +VVN + DL RI GE+K + +IA I + Sbjct: 116 RERGFSYKKNAPLDMRMNQEASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQA 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R+ P +TT +L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A Sbjct: 176 REQKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDM 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L G + V++FHSLEDRL K+ F S + + + +++K ++P++E Sbjct: 236 LALDGRISVITFHSLEDRLTKQLFKEVSTVKVPKGLPFIPDDLKPKMELVSRKPILPSKE 295 Query: 299 DVAFNRRSRSAKLRAGMRT 317 ++ N RS SAKLR + Sbjct: 296 ELEANNRSHSAKLRVARKI 314 >gi|167754606|ref|ZP_02426733.1| hypothetical protein CLORAM_00108 [Clostridium ramosum DSM 1402] gi|237733759|ref|ZP_04564240.1| S-adenosyl-methyltransferase mraW [Mollicutes bacterium D7] gi|167705438|gb|EDS20017.1| hypothetical protein CLORAM_00108 [Clostridium ramosum DSM 1402] gi|229383097|gb|EEO33188.1| S-adenosyl-methyltransferase mraW [Coprobacillus sp. D7] Length = 314 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 103/311 (33%), Positives = 166/311 (53%), Gaps = 8/311 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74 + DHV VLL++ + LN + +D T G G+S + K ++ D+D A+ Sbjct: 1 MFDHVTVLLKEAVEGLNIKADGIYVDCTLGGAGHSCAILKQLTTGHLYCFDQDQTAIEAA 60 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + +++ + F +++ + + GV DG++FDLGVSS Q D G RGFS+ Sbjct: 61 RLRLDAVGNNYTIIYSNFVNIKEKLNELGVTRVDGILFDLGVSSPQFDTGSRGFSYNYDA 120 Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM S + A +VN + + IL +EK A +IA I ++RQ P +TT + Sbjct: 121 RLDMRMDTSNPLDAYAIVNTWPYERIVEILYKYADEKFAKQIARKIEQKRQIRPIETTFE 180 Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I+ + F++ HPA R+FQALRI VN+E+ + L+ + L GG + V++ Sbjct: 181 LVDIIKDAIPAFARRKGGHPAKRTFQALRIAVNDELNVFDRALKDSLDLLNVGGRISVIT 240 Query: 250 FHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLED++ K F + K + + + F+ I KK +V ++E++ N R+ S Sbjct: 241 FHSLEDKICKYTFNDVTKLKDVPPGLPVIPDYLQPRFKLINKKAMVASKEELEVNHRAHS 300 Query: 309 AKLRAGMRTVE 319 AKLR R E Sbjct: 301 AKLRIIEREFE 311 >gi|291542210|emb|CBL15320.1| S-adenosyl-methyltransferase MraW [Ruminococcus bromii L2-63] Length = 307 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 113/304 (37%), Positives = 170/304 (55%), Gaps = 7/304 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77 H+PVLLE+ + L + +D T G GG+S +I++D+DP A+ E Sbjct: 5 HIPVLLEQAVDALAVKENGIYVDGTAGGGGHSSEILSRLTTGKLISIDQDPDAILTLTER 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + E + + F+ + + +GV DGV+ D+GVSS Q+D +RGFSF + PLD Sbjct: 65 FKK-NENSIIIKGNFADMVSLLHSRGVGRVDGVLLDIGVSSHQLDTAERGFSFHEDAPLD 123 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRMS SG +A+++VN +L RIL + GEEK A I + IVK R P +TT +L+ + Sbjct: 124 MRMSQSGTTAAELVNTLPAGELRRILSVYGEEKFAVAIVNGIVKARAEKPIETTLELAEI 183 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 I++ V HPA +SFQALRI VN+E+ L +GL A + L +GG L V++FHSLE Sbjct: 184 IKENVPQRVRRDGHPARKSFQALRIAVNDELGVLERGLDGAFELLGSGGRLAVITFHSLE 243 Query: 255 DRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 DR+VK+ AS + + + + + +K V + ++ N R+RSAKLR Sbjct: 244 DRIVKQKMASWCQGCTCPKDFPVCVCGNKPKAKLVVRKPVCANETELRNNPRARSAKLRI 303 Query: 314 GMRT 317 + Sbjct: 304 CEKI 307 >gi|325697683|gb|EGD39568.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus sanguinis SK160] Length = 316 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 100/319 (31%), Positives = 170/319 (53%), Gaps = 15/319 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 M++ H H+ VLL + + L P + +DAT G G+S ++ A D Sbjct: 1 MTNEFH-----HITVLLHETVDQLAVKPDGIYVDATLGGAGHSEYLLSQLGDEGHLYAFD 55 Query: 66 RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120 +D A+ ++ + Y E+ + + F L+ + + GV DG+ +DLGVSS Q+D Sbjct: 56 QDQTAIDNAKKRLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQ 115 Query: 121 GDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS+++ PLDMRM+ ++A +VVN + +DL RI GE+K + +IA I + Sbjct: 116 RERGFSYKQDAPLDMRMNREAALTAFEVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQA 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R P +TT +L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A Sbjct: 176 RSIKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDL 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L G + V++FHSLEDRL K+ F S + + + +++K ++P++E Sbjct: 236 LAVDGRIAVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKLELVSRKPILPSKE 295 Query: 299 DVAFNRRSRSAKLRAGMRT 317 ++ N R+ SAKLR + Sbjct: 296 ELESNNRAHSAKLRVARKI 314 >gi|68565437|sp|Q5M2U6|RSMH_STRT2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 316 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 104/320 (32%), Positives = 167/320 (52%), Gaps = 15/320 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M++ H HV VLL + + +L+ P + +DAT G G+S ++ D Sbjct: 1 MTNEFH-----HVTVLLHETVDMLDIKPDGIYVDATLGGAGHSSYLLSQLSEKGHLYCFD 55 Query: 66 RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120 +D A+ Q ++DY ++ + + F L+ + GV DG+++DLGVSS Q+D Sbjct: 56 QDQKAIDNAQVRLKDYIDKGMVTFIKDNFRNLKSNLEALGVSEIDGILYDLGVSSPQLDE 115 Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS+++ LDMRM+ ++A DVVN DL RI GE+K + +IA I + Sbjct: 116 RERGFSYKQDAKLDMRMNEEASLTAYDVVNTYPYNDLVRIFFKYGEDKFSKQIARKIEQA 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 RQ P +TT +L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A Sbjct: 176 RQVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQEALDL 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L G + V++FHSLEDRL K+ F S + + +K ++P+QE Sbjct: 236 LAVNGRISVITFHSLEDRLTKQLFKEASTADVPKGLPFIPEDLQPKVALVNRKPILPSQE 295 Query: 299 DVAFNRRSRSAKLRAGMRTV 318 ++ N RS SAKLR + Sbjct: 296 ELEANNRSHSAKLRVAKKIR 315 >gi|148265993|ref|YP_001232699.1| S-adenosyl-methyltransferase MraW [Geobacter uraniireducens Rf4] gi|146399493|gb|ABQ28126.1| S-adenosyl-methyltransferase MraW [Geobacter uraniireducens Rf4] Length = 303 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 122/303 (40%), Positives = 176/303 (58%), Gaps = 9/303 (2%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETMRD 80 + +VI L P G + +D T G GG++R + + +I DRD A++ E + Sbjct: 1 MAAEVIQYLAPRAGGIYVDGTLGGGGHARQILEASAPDGLLIGFDRDREAIAIAAERLAP 60 Query: 81 YKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 Y E+ L Q F+ L + + + G+D + + D+GVSS Q+D RGFSFQ PLDMRM Sbjct: 61 YGERVRLVQRNFACLAETLDEMGIDAIDGFLLDVGVSSHQLDTAARGFSFQHDAPLDMRM 120 Query: 138 S-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 SG SASD+VN + DL RI+ GEE+ A RIA IVKRR+ +P +TT L +I+ Sbjct: 121 DVSSGQSASDLVNTLSEADLARIIWDYGEERWAKRIAAFIVKRREESPIETTMQLVDVIK 180 Query: 197 KTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 V + + R+HPATR+FQALRI VN+E+ L + L + + LK GG +V+SFHSLED Sbjct: 181 GAVPRGAWDVRLHPATRTFQALRIAVNDELASLEKALAAGVRFLKKGGRGVVISFHSLED 240 Query: 256 RLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 R+VK F S + + + + + IT K V+ + +V+ N RSRSA+LRA Sbjct: 241 RIVKTSFRSFAQGCTCPKSIPRCVCGKLPLVKVITGKPVMANEAEVSMNPRSRSARLRAA 300 Query: 315 MRT 317 + Sbjct: 301 EKI 303 >gi|332364602|gb|EGJ42371.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus sanguinis SK1059] Length = 316 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 100/319 (31%), Positives = 170/319 (53%), Gaps = 15/319 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 M++ H H+ VLL + + L P + +DAT G G+S ++ A D Sbjct: 1 MTNEFH-----HITVLLHETVDQLAVKPDGIYVDATLGGAGHSEYLLSQLGDEGHLYAFD 55 Query: 66 RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120 +D A+ ++ + Y E+ + + F L+ + + GV DG+ +DLGVSS Q+D Sbjct: 56 QDQTAIDNAKKRLAPYIERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQ 115 Query: 121 GDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS+++ PLDMRM+ ++A +VVN + +DL RI GE+K + +IA I + Sbjct: 116 RERGFSYKQDAPLDMRMNRDAALTAFEVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQA 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R P +TT +L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A Sbjct: 176 RSVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDL 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L G + V++FHSLEDRL K+ F S + + + +++K ++P++E Sbjct: 236 LAVDGRIAVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKLELVSRKPILPSKE 295 Query: 299 DVAFNRRSRSAKLRAGMRT 317 ++ N R+ SAKLR + Sbjct: 296 ELESNNRAHSAKLRVARKI 314 >gi|227544880|ref|ZP_03974929.1| S-adenosyl-methyltransferase [Lactobacillus reuteri CF48-3A] gi|300909900|ref|ZP_07127360.1| S-adenosyl-methyltransferase MraW [Lactobacillus reuteri SD2112] gi|154705578|gb|ABS84215.1| S-adenosyl-methyltransferase MraW [Lactobacillus reuteri] gi|227185154|gb|EEI65225.1| S-adenosyl-methyltransferase [Lactobacillus reuteri CF48-3A] gi|300892548|gb|EFK85908.1| S-adenosyl-methyltransferase MraW [Lactobacillus reuteri SD2112] Length = 318 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 119/313 (38%), Positives = 183/313 (58%), Gaps = 13/313 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76 HV VLL++ +A LN P +DAT G GG++++ + ++ + D+D A++ +E Sbjct: 5 KHVTVLLKEAVAGLNVQPTGTYVDATLGGGGHTQAILQQLVDGHLYSFDQDQTAINYNKE 64 Query: 77 TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++ EQ +L + F L+ + V +G+++DLGVSS Q D RGFS+Q Sbjct: 65 QLKTAIEQQKLTLIEDNFRNLKAELDSYNVKHVNGILYDLGVSSPQFDDAKRGFSYQHDA 124 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ +SA +VVN+ + + L +IL GEEK A IA I +RR+ AP +TT + Sbjct: 125 PLDMRMNQEQKLSAMEVVNEWSYERLVKILYRYGEEKFAKSIARKIEQRRKIAPIKTTFE 184 Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I++ + + + + HPA +SFQA+RI VN+E+ L + L A L GG + V++ Sbjct: 185 LVDVIKEGIPAAARRHGGHPAKKSFQAIRIAVNDELGALEESLEQALDLLDVGGRISVIT 244 Query: 250 FHSLEDRLVKKFFASR---SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 F SLEDRLVK F + SG V +IP+ P F+ I KK +V ++E++A N R+ Sbjct: 245 FQSLEDRLVKTMFREKTSLSGDVPQGLPVIPAGMEPN-FKLINKKPIVASEEELAANHRA 303 Query: 307 RSAKLRAGMRTVE 319 SAKLR + E Sbjct: 304 HSAKLRIIEKIRE 316 >gi|81428357|ref|YP_395357.1| PutativeS-adenosylmethionine-dependent-methyltran sferase [Lactobacillus sakei subsp. sakei 23K] gi|88909201|sp|Q38XN3|RSMH_LACSS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|78609999|emb|CAI55047.1| PutativeS-adenosylmethionine-dependent-methyltransferase [Lactobacillus sakei subsp. sakei 23K] Length = 318 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 102/314 (32%), Positives = 174/314 (55%), Gaps = 10/314 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73 H VLL++ + LN P + +DAT G GG+S ++ + D+D A+ Sbjct: 3 ETFKHQSVLLKETVDALNVQPDGIYVDATLGGGGHSEYLLSQLTTGHLYSFDQDDHALES 62 Query: 74 GQETMRDYKE--QFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQ 128 ++ + Y + Q + ++ F L+ + ++G+ DG+++DLGVSS Q D RGFS++ Sbjct: 63 SRQRLAKYADAGQVTFIKSNFRFLKIALAEQGITKIDGILYDLGVSSPQFDDAQRGFSYK 122 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 K PLDMRM + ++A VVN+ + + L +I GEEK + ++A I ++R+ AP +T Sbjct: 123 KEAPLDMRMDQGAELTAYTVVNEWSYQQLIKIFFRYGEEKFSKQVARKIEQQREIAPIET 182 Query: 188 TQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T L+ LI++ + ++ HPA R FQA+RI VN+E+ + + A +K GG + Sbjct: 183 TIQLADLIKEAIPAPARRTGGHPAKRIFQAIRIAVNDELGAIEDSVEQAIPLVKVGGRIS 242 Query: 247 VVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 +++F SLEDRLVK F ++ + I V + + +K ++PT++++ N R Sbjct: 243 IITFQSLEDRLVKTMFKEQATLPDIPKGLPIMPGTEKTVLKLVNRKPILPTEDELTVNHR 302 Query: 306 SRSAKLRAGMRTVE 319 + SAKLR + E Sbjct: 303 AHSAKLRVAEKQKE 316 >gi|295106887|emb|CBL04430.1| S-adenosyl-methyltransferase MraW [Gordonibacter pamelaeae 7-10-1-b] Length = 323 Score = 379 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 115/322 (35%), Positives = 181/322 (56%), Gaps = 14/322 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65 M+S H PVLL + + N P + +DAT G G+S K+ G +I +D Sbjct: 1 MTSEYQQQEFQHTPVLLAECLEQSNLKPQQTFVDATLGGAGHSLEMAKLIGPGGTLIGID 60 Query: 66 RDPFAVSCGQETMRDYKE----QFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQI 118 +D A++ + + + L + F + D + GVD +FDLGVSS+QI Sbjct: 61 QDEVALAAARSRLESLPDGQRPNLELLRGNFGDMDDLLVSAEVPGVDAFLFDLGVSSVQI 120 Query: 119 DCGDRGFSFQKSGPLDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 D RGFSF+++GPLDMRM + ++A+++VN N DLTRI+ +EK ASRIA I Sbjct: 121 DTPSRGFSFKENGPLDMRMDPGKTTLTAAEIVNTYNAADLTRIIRAYSDEKWASRIADFI 180 Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 V+ R + +T++ L +I+ + ++ HPA R+FQALRI VN+E++ L +GL +A Sbjct: 181 VRSRANGRIETSEQLVDVIKAAIPASARRAGGHPAKRTFQALRIEVNSELDVLRRGLDAA 240 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVV 294 + L GG L+V+S+HSLEDR+VK+ F + + + + + +T+K ++ Sbjct: 241 VRWLNPGGRLVVISYHSLEDRIVKETFNAYANRCTCPPDLPVCVCGKEPILDLVTRKPLL 300 Query: 295 PTQEDVAFNRRSRSAKLRAGMR 316 PT ++ N R+RSAKLR + Sbjct: 301 PTAGEIERNPRARSAKLRVARK 322 >gi|251783120|ref|YP_002997423.1| S-adenosyl-methyltransferase MraW [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391750|dbj|BAH82209.1| S-adenosyl-methyltransferase mraW [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 337 Score = 379 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 108/328 (32%), Positives = 174/328 (53%), Gaps = 15/328 (4%) Query: 1 MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-- 58 ++ + K M+ H HV VLL + + +L+ P + +DAT G G+S Sbjct: 14 LKYGTIKVMTKEFH-----HVTVLLHETVDMLDIKPNGIYVDATLGGSGHSAYLLSKLSE 68 Query: 59 -SNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGVD---GVVFDLG 112 ++ D+D A+ Q T++ Y K Q + + F L+ + GVD G+++DLG Sbjct: 69 QGHLYCFDQDQKAIDNAQVTLKSYIDKGQVTFIKDNFRHLKARLTALGVDEIDGILYDLG 128 Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASR 171 VSS Q+D +RGFS+ + PLDMRM + ++A DVVN DL +I GE+K + + Sbjct: 129 VSSPQLDERERGFSYNQDAPLDMRMDRQAPLTAYDVVNTYPFNDLVKIFFKYGEDKFSKQ 188 Query: 172 IAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQ 230 IA I + R P +TT +L+ LI+ + + HPA + FQA+RI VN+E+ + Sbjct: 189 IARKIEQARAIKPIETTTELAELIKAAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADE 248 Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK 290 ++ A + L G + V++FHSLEDRL K+ F S + F+ +++ Sbjct: 249 SIQDAMELLALDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPEDMKPTFELVSR 308 Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMRTV 318 K ++P+QE++A N R+ SAKLR + Sbjct: 309 KPILPSQEELAANNRAHSAKLRVAKKIR 336 >gi|42558979|sp|Q89FT9|RSMH_BRAJA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 329 Score = 379 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 151/327 (46%), Positives = 202/327 (61%), Gaps = 5/327 (1%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCG 74 + H+PVL + I L P G + +DATFGAGGYSR+ G+ +IA+DRD A++ G Sbjct: 2 SSAPHIPVLGREAIDHLAPREGGIYVDATFGAGGYSRAILDVPGTRLIAIDRDRTAIAGG 61 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV---SSMQIDCGDRGFSFQKSG 131 E + + +L + FS L D +GVD V + SSMQ+D RGFSF+ G Sbjct: 62 AELVERSAGRLTLVEDRFSHLADVCAAQGVDAVDGVVMDVGVSSMQLDQAGRGFSFRLDG 121 Query: 132 PLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 PLDMRM +G +A+DVV +A+ DL I+ +LGEE+ + R+A AIV RQ PF TT+ L Sbjct: 122 PLDMRMGQAGPTAADVVARASEADLADIIYLLGEERHSRRVARAIVADRQETPFTTTRAL 181 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + L+ + V SK IHPATR+FQALRIFVN E+EEL L +AE+ LK GG L+VVSFH Sbjct: 182 ADLVGRVV-RSKPGDIHPATRTFQALRIFVNEELEELQTALTAAERVLKPGGRLVVVSFH 240 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+VK F A RS RH+ FQ +T++ VV +++VA N R+RSAKL Sbjct: 241 SLEDRIVKNFLAERSKTGGGSRHLPEVAQTAPSFQLLTRRPVVAGEDEVAHNPRARSAKL 300 Query: 312 RAGMRTVERSIEDDSFVHLPRLPTLSQ 338 RA RT + +DD PRL + + Sbjct: 301 RAAERTSAPAHKDDQSSSWPRLSDVMR 327 >gi|116628390|ref|YP_821009.1| S-adenosyl-methyltransferase MraW [Streptococcus thermophilus LMD-9] gi|68565436|sp|Q5LY91|RSMH_STRT1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|122267015|sp|Q03J09|RSMH_STRTD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|116101667|gb|ABJ66813.1| Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Streptococcus thermophilus LMD-9] gi|312279018|gb|ADQ63675.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Streptococcus thermophilus ND03] Length = 316 Score = 379 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 109/321 (33%), Positives = 172/321 (53%), Gaps = 17/321 (5%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M++ H HV VLL + + +L+ P + +DAT G G+S ++ D Sbjct: 1 MTNEFH-----HVTVLLHETVDMLDIKPDGIYVDATLGGAGHSSYLLSQLSEKGHLYCFD 55 Query: 66 RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120 +D A+ Q ++DY ++ + + F L+ + GV DG+++DLGVSS Q+D Sbjct: 56 QDQKAIDNAQVRLKDYIDKGMVTFIKDNFRNLKSNLEALGVSEIDGILYDLGVSSPQLDE 115 Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS+++ LDMRM+ ++A DVVN DL RI GE+K + +IA I + Sbjct: 116 RERGFSYKQDAKLDMRMNEEASLTAYDVVNTYPYNDLVRIFFKYGEDKFSKQIARKIEQA 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 RQ P +TT +L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A Sbjct: 176 RQVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQEALDL 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297 L G + V++FHSLEDRL K+ F S V IP + P V + +K ++P+Q Sbjct: 236 LAVDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPEDLQPKV-ALVNRKPILPSQ 294 Query: 298 EDVAFNRRSRSAKLRAGMRTV 318 E++ N RS SAKLR + Sbjct: 295 EELEANNRSHSAKLRVAKKIR 315 >gi|323350327|ref|ZP_08085992.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus sanguinis VMC66] gi|322123512|gb|EFX95183.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus sanguinis VMC66] Length = 316 Score = 379 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 100/319 (31%), Positives = 170/319 (53%), Gaps = 15/319 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 M++ H H+ VLL + + L P + +DAT G G+S ++ A D Sbjct: 1 MTNEFH-----HITVLLHETVDQLAVKPDGIYVDATLGGAGHSEYLLSQLGDEGHLYAFD 55 Query: 66 RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120 +D A+ ++ + Y E+ + + F L+ + + GV DG+ +DLGVSS Q+D Sbjct: 56 QDQMAIDNAKKRLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQ 115 Query: 121 GDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS+++ PLDMRM+ ++A +VVN + +DL RI GE+K + +IA I + Sbjct: 116 RERGFSYKQDAPLDMRMNREAALTAFEVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQA 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R P +TT +L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A Sbjct: 176 RSVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDL 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L G + V++FHSLEDRL K+ F S + + + +++K ++P++E Sbjct: 236 LAVDGRIAVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKLELVSRKPILPSKE 295 Query: 299 DVAFNRRSRSAKLRAGMRT 317 ++ N R+ SAKLR + Sbjct: 296 ELESNNRAHSAKLRVARKI 314 >gi|293364229|ref|ZP_06610955.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus oralis ATCC 35037] gi|307702416|ref|ZP_07639372.1| S-adenosyl-methyltransferase MraW [Streptococcus oralis ATCC 35037] gi|291317075|gb|EFE57502.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus oralis ATCC 35037] gi|307623998|gb|EFO02979.1| S-adenosyl-methyltransferase MraW [Streptococcus oralis ATCC 35037] Length = 316 Score = 379 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 106/319 (33%), Positives = 170/319 (53%), Gaps = 15/319 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M+ H HV VLL + I +L+ P + +DAT G G+S ++ A D Sbjct: 1 MTKEFH-----HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFD 55 Query: 66 RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120 +D A+ Q+ + Y E+ + + F LQ + + GV DG+ +DLGVSS Q+D Sbjct: 56 QDQNAIDNAQKRLAPYIEKGMVTFIKDNFRHLQARLQEAGVQEIDGICYDLGVSSPQLDQ 115 Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS++K PLDMRM+ ++A +VVN + DL RI GE+K + +IA I + Sbjct: 116 RERGFSYKKDAPLDMRMNQEASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQA 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R+ P +TT +L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A Sbjct: 176 REVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDM 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L G + V++FHSLEDRL K+ F S + + + +++K ++P+ E Sbjct: 236 LALDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAE 295 Query: 299 DVAFNRRSRSAKLRAGMRT 317 ++ N RS SAKLR + Sbjct: 296 ELEANNRSHSAKLRVARKI 314 >gi|163816702|ref|ZP_02208065.1| hypothetical protein COPEUT_02892 [Coprococcus eutactus ATCC 27759] gi|158447959|gb|EDP24954.1| hypothetical protein COPEUT_02892 [Coprococcus eutactus ATCC 27759] Length = 311 Score = 379 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 102/305 (33%), Positives = 169/305 (55%), Gaps = 9/305 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQE 76 H VLLE+ I LN P + +D T G G+S G +I +D+D A++ + Sbjct: 5 HKSVLLEETIDNLNIKPDGIYVDGTLGGAGHSEQIVRRLGEGGKLIGIDQDEDAIAAATK 64 Query: 77 TMRDYKEQFSLFQAT---FSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + YK++ ++ + F ++ D + + VDG++ DLGVSS Q+D DRGF+++ PL Sbjct: 65 RLEPYKDKVTIVRDNYQNFRRILDELNIQKVDGILLDLGVSSYQLDNADRGFTYRVDAPL 124 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM +A D+VN+ +L RIL GEE+ A IA+ I K RQ TT++L+ Sbjct: 125 DMRMDNRQSKTAKDIVNEYPEAELFRILRDYGEERYAKSIAYHICKYRQDKEIDTTEELN 184 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ ++ +N + HP+ ++FQA+RI +N E++ L + +L GG L +++FH Sbjct: 185 DIIRGSIPAKARNGQGHPSKQTFQAIRIELNRELDVLRDSIDGMIASLNPGGRLCIITFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK F + + + + + IT+K ++P + ++ N RS+S+K Sbjct: 245 SLEDRIVKTAFRKNENPCICPPNFPVCTCGRKSRGRVITRKPIIPGERELIENSRSKSSK 304 Query: 311 LRAGM 315 LR Sbjct: 305 LRVFE 309 >gi|296877054|ref|ZP_06901095.1| S-adenosyl-methyltransferase MraW [Streptococcus parasanguinis ATCC 15912] gi|296431915|gb|EFH17721.1| S-adenosyl-methyltransferase MraW [Streptococcus parasanguinis ATCC 15912] Length = 316 Score = 379 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 105/319 (32%), Positives = 169/319 (52%), Gaps = 15/319 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 MS H HV VLL + I +L+ P + +DAT G G+S ++ A D Sbjct: 1 MSKEFH-----HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLTKLNESGHLYAFD 55 Query: 66 RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120 +D A+ + + + E+ + + F L++ + D GV +G+ +DLGVSS Q+D Sbjct: 56 QDQHAIENAKIRLAPFIEKGMVTFIKDNFRHLKERLNDIGVTEINGICYDLGVSSPQLDE 115 Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS++K PLDMRM+ ++A +VVN + DL RI GE+K + +IA I + Sbjct: 116 RERGFSYKKDAPLDMRMNQEASLTAYEVVNTYDYHDLVRIFFKYGEDKFSKQIARKIEQA 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R P +TT +L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A Sbjct: 176 RAIKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDL 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L G + V++FHSLEDRL K+ F S + + + I +K ++P++E Sbjct: 236 LALDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELINRKPILPSEE 295 Query: 299 DVAFNRRSRSAKLRAGMRT 317 ++ N RS SAKLR + Sbjct: 296 ELEENNRSHSAKLRVARKI 314 >gi|240850900|ref|YP_002972300.1| S-adenosyl-methyltransferase MraW [Bartonella grahamii as4aup] gi|263445977|sp|C6AEK6|RSMH_BARGA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|240268023|gb|ACS51611.1| S-adenosyl-methyltransferase MraW [Bartonella grahamii as4aup] Length = 332 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 162/322 (50%), Positives = 213/322 (66%), Gaps = 3/322 (0%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+PVLL+ V+A L P G ++D TFGAGGY+ + K G+ VIALDRDP A+S GQ + Sbjct: 11 HIPVLLQPVLAGLMPLVGAKVIDGTFGAGGYTCALLKAGAEVIALDRDPHAISAGQSLVE 70 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 ++ + L Q FSQL V + VD V+ D+GVSSMQ+D +RGFSFQK GPLDMRM+ Sbjct: 71 EFFPRLRLVQMEFSQLDRVVEE-KVDAVILDIGVSSMQLDEAERGFSFQKDGPLDMRMAQ 129 Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199 +G +A DVVN +DL RI ILGEE+ A RIA I KRR PF T DL+ I+ + Sbjct: 130 TGFTAGDVVNHLKARDLARIFKILGEERYAGRIARMIEKRRVVQPFLRTGDLAYAIEALI 189 Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259 +RIHPATR FQALRI+VN+EI ELA+GL +AE+ LK GG L VVSFHSLEDR+VK Sbjct: 190 GRKPGDRIHPATRVFQALRIYVNDEIGELARGLFAAERILKPGGRLGVVSFHSLEDRMVK 249 Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319 +FF+ RSG+ M R++ PA F + K + ++E++ N RSRSA+LR G+RT Sbjct: 250 RFFSFRSGECMRSRYLPEIKTAPATFFPLFKGGITASEEELQQNPRSRSARLRIGVRTEA 309 Query: 320 RSIEDDSFVHLPRLPTLSQFRG 341 ++ D + L L ++ F G Sbjct: 310 EALAAD--MKLFGLAEIASFEG 329 >gi|313899190|ref|ZP_07832710.1| S-adenosyl-methyltransferase MraW [Clostridium sp. HGF2] gi|312956013|gb|EFR37661.1| S-adenosyl-methyltransferase MraW [Clostridium sp. HGF2] Length = 311 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 117/311 (37%), Positives = 166/311 (53%), Gaps = 9/311 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 + H VLL + I L + +D T G GG+S ++ A DRD A+ Sbjct: 1 MMKHYSVLLHESIDNLAIHSDGIYVDGTLGRGGHSAEILARIPQGHLYAFDRDASAIEKS 60 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +E + + +L + FS L+ + +GV DG+V DLGVSS Q D RGFS++ Sbjct: 61 RERLAQIGDNVTLIHSNFSNLKRELTARGVTGIDGMVLDLGVSSPQFDEAQRGFSYRFDA 120 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S +SA VVN+ ++L RI GEE A +IA I K R+ P +TT Sbjct: 121 PLDMRMDQSQKLSAYQVVNEWEYQELVRIFFQFGEESFAKQIARKIEKAREVKPIETTFA 180 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I+ + N + HPA + FQA+RI VN+E+ EL LR A + L GG L V+S Sbjct: 181 LVDVIKSALPAKVLNKKGHPAKKVFQAIRIAVNDELGELQLVLRDALELLHVGGRLCVIS 240 Query: 250 FHSLEDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 F SLEDR+VK F+S S + ++P + A ++ + KK + T+E++ N RS Sbjct: 241 FQSLEDRIVKDTFSSCSKPKQYDKRIPILPQDMEAAPYRLLNKKPITATEEELRENMRSH 300 Query: 308 SAKLRAGMRTV 318 SAKLR R Sbjct: 301 SAKLRCIERIR 311 >gi|322391027|ref|ZP_08064531.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus parasanguinis ATCC 903] gi|321142257|gb|EFX37731.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus parasanguinis ATCC 903] Length = 316 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 104/319 (32%), Positives = 169/319 (52%), Gaps = 15/319 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 MS H HV VLL + I +L+ P + +DAT G G+S ++ A D Sbjct: 1 MSKEFH-----HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLTKLNESGHLYAFD 55 Query: 66 RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120 +D A+ + + + E+ + + F L++ + + GV DG+ +DLGVSS Q+D Sbjct: 56 QDQHAIENAKIRLAPFIEKGMVTFIKDNFRHLKERLNELGVTEIDGICYDLGVSSPQLDE 115 Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS++K PLDMRM+ ++A +VVN + DL RI GE+K + +IA I + Sbjct: 116 RERGFSYKKDAPLDMRMNQEASLTAYEVVNSYDYHDLVRIFFKYGEDKFSKQIARKIEQA 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R P +TT +L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A Sbjct: 176 RAIKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDL 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L G + V++FHSLEDRL K+ F S + + + + +K ++P++E Sbjct: 236 LALDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVNRKPILPSEE 295 Query: 299 DVAFNRRSRSAKLRAGMRT 317 ++ N RS SAKLR + Sbjct: 296 ELEENNRSHSAKLRVARKI 314 >gi|270292146|ref|ZP_06198361.1| S-adenosyl-methyltransferase MraW [Streptococcus sp. M143] gi|270279674|gb|EFA25516.1| S-adenosyl-methyltransferase MraW [Streptococcus sp. M143] Length = 316 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 107/319 (33%), Positives = 171/319 (53%), Gaps = 15/319 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M+ H HV VLL + I +L+ P + +DAT G G+S ++ A D Sbjct: 1 MTKEFH-----HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFD 55 Query: 66 RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120 +D A+ Q+ + Y E+ + + F LQ + D GV DG+ +DLGVSS Q+D Sbjct: 56 QDQNAIDNAQKRLAPYIEKGMVTFIKDNFRHLQARLQDAGVQEIDGICYDLGVSSPQLDQ 115 Query: 121 GDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS++K PLDMRM+ + ++A +VVN + DL RI GE+K + +IA I + Sbjct: 116 RERGFSYKKDAPLDMRMNQGASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQA 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R+ P +TT +L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A Sbjct: 176 REVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDM 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L G + V++FHSLEDRL K+ F S + + + +++K ++P+ E Sbjct: 236 LALDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAE 295 Query: 299 DVAFNRRSRSAKLRAGMRT 317 ++ N RS SAKLR + Sbjct: 296 ELEANNRSHSAKLRVARKI 314 >gi|324991745|gb|EGC23677.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus sanguinis SK353] Length = 316 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 100/319 (31%), Positives = 170/319 (53%), Gaps = 15/319 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M++ H H+ VLL + + L P + +DAT G G+S ++ A D Sbjct: 1 MTNEFH-----HITVLLHETVDQLAVKPDGIYVDATLGGAGHSEYLLSQLRDEGHLYAFD 55 Query: 66 RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120 +D A+ ++ + Y E+ + + F L+ + + GV DG+ +DLGVSS Q+D Sbjct: 56 QDQTAIDNAKKRLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQ 115 Query: 121 GDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS+++ PLDMRM+ ++A +VVN + +DL RI GE+K + +IA I + Sbjct: 116 RERGFSYKQDAPLDMRMNREAALTAFEVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQA 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R P +TT +L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A Sbjct: 176 RSIKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDL 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L G + V++FHSLEDRL K+ F S + + + +++K ++P++E Sbjct: 236 LAVDGRIAVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKLELVSRKPILPSKE 295 Query: 299 DVAFNRRSRSAKLRAGMRT 317 ++ N R+ SAKLR + Sbjct: 296 ELESNNRAHSAKLRVARKI 314 >gi|260430921|ref|ZP_05784892.1| S-adenosyl-methyltransferase MraW [Silicibacter lacuscaerulensis ITI-1157] gi|260414749|gb|EEX08008.1| S-adenosyl-methyltransferase MraW [Silicibacter lacuscaerulensis ITI-1157] Length = 331 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 148/327 (45%), Positives = 198/327 (60%), Gaps = 7/327 (2%) Query: 9 MSSAIH-HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDR 66 M+ A H T H+PVLL ++ + P LD TFGAGGY+R + G+ VI +DR Sbjct: 1 MAGADHTPTDKPHIPVLLRPLLDAVRPVS-GTWLDGTFGAGGYTRGLLEAGADRVIGVDR 59 Query: 67 DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126 DP A + +Y ++ + FS++ +Y D +DGVV DLGVSSMQ+D +RGFS Sbjct: 60 DPLAFEMAADWAAEYGDRLVMQPGVFSRMDEYASD--LDGVVLDLGVSSMQLDQAERGFS 117 Query: 127 FQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 F K GPLDMRMS G SA+D+VN A L IL GEE+ + RIA AIVK R AP Sbjct: 118 FMKDGPLDMRMSQEGESAADLVNTATEAQLADILFHYGEERASRRIARAIVKARAEAPIT 177 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 TT L+ +++ + +K + HPATRSFQALRI VN E EEL QGL +AE+ALK GG L Sbjct: 178 TTLRLAEIVESCLPRAKPGQSHPATRSFQALRIAVNAEYEELFQGLMAAERALKPGGKLA 237 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPS-NAHPAVFQSITKKVVVPTQEDVAFNRR 305 VV+FHS+EDR+VK+F +R+GK P F T+K + P +++ N R Sbjct: 238 VVTFHSVEDRMVKRFLQARAGKTGRANRYAPEIQQDQPQFTLKTRKAIGPDAQELQDNPR 297 Query: 306 SRSAKLRAGMRTVERSIEDDSF-VHLP 331 +RSAKLR +RT + E D+ + +P Sbjct: 298 ARSAKLRVAVRTDAPAGEIDARAIGMP 324 >gi|324992001|gb|EGC23923.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus sanguinis SK405] gi|325688754|gb|EGD30763.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus sanguinis SK115] gi|327490522|gb|EGF22303.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus sanguinis SK1058] Length = 316 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 100/319 (31%), Positives = 170/319 (53%), Gaps = 15/319 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 M++ H H+ VLL + + L P + +DAT G G+S ++ A D Sbjct: 1 MTNEFH-----HITVLLHETVDQLAVKPDGIYIDATLGGAGHSEYLLSQLGDEGHLYAFD 55 Query: 66 RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120 +D A+ ++ + Y E+ + + F L+ + + GV DG+ +DLGVSS Q+D Sbjct: 56 QDQTAIDNAKKRLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQ 115 Query: 121 GDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS+++ PLDMRM+ ++A +VVN + +DL RI GE+K + +IA I + Sbjct: 116 RERGFSYKQDAPLDMRMNREAALTAFEVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQA 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R P +TT +L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A Sbjct: 176 RSVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDL 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L G + V++FHSLEDRL K+ F S + + + +++K ++P++E Sbjct: 236 LAVDGRIAVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKLELVSRKPILPSKE 295 Query: 299 DVAFNRRSRSAKLRAGMRT 317 ++ N R+ SAKLR + Sbjct: 296 ELESNNRAHSAKLRVARKI 314 >gi|148543819|ref|YP_001271189.1| S-adenosyl-methyltransferase MraW [Lactobacillus reuteri DSM 20016] gi|184153222|ref|YP_001841563.1| hypothetical protein LAR_0567 [Lactobacillus reuteri JCM 1112] gi|227364723|ref|ZP_03848772.1| S-adenosyl-methyltransferase [Lactobacillus reuteri MM2-3] gi|325682650|ref|ZP_08162167.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Lactobacillus reuteri MM4-1A] gi|263456253|sp|A5VJ28|RSMH_LACRD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263456260|sp|B2G6K1|RSMH_LACRJ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|148530853|gb|ABQ82852.1| S-adenosyl-methyltransferase MraW [Lactobacillus reuteri DSM 20016] gi|183224566|dbj|BAG25083.1| conserved hypothetical protein [Lactobacillus reuteri JCM 1112] gi|227070182|gb|EEI08556.1| S-adenosyl-methyltransferase [Lactobacillus reuteri MM2-3] gi|324978489|gb|EGC15439.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Lactobacillus reuteri MM4-1A] Length = 318 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 119/313 (38%), Positives = 180/313 (57%), Gaps = 13/313 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76 HV VLL++ +A LN P +DAT G GG++++ + ++ + D+D A+ +E Sbjct: 5 KHVTVLLKEAVAGLNVQPTGTYVDATLGGGGHTQAILQQLVDGHLYSFDQDQTAIDYNKE 64 Query: 77 TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++ EQ +L + F L+ + V +G+++DLGVSS Q D RGFS+Q Sbjct: 65 HLKTAIEQQKLTLVEDNFRNLKAELNSYNVKHVNGILYDLGVSSPQFDDAKRGFSYQHDA 124 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ +SA +VVN+ + L +IL GEEK A IA I +RR+ AP +TT + Sbjct: 125 PLDMRMNQEQKLSAMEVVNEWPYERLVKILYRYGEEKFAKSIARKIEQRRKVAPIKTTFE 184 Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I++ + + + + HPA +SFQA+RI VN+E+ L + L A L GG + V++ Sbjct: 185 LVDVIKEGIPAAARRHGGHPAKKSFQAIRIAVNDELGALEESLEQALDLLDVGGRISVIT 244 Query: 250 FHSLEDRLVKKFFASR---SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 F SLEDRLVK F + SG V +IP+ P F+ I KK +V + E++A N R+ Sbjct: 245 FQSLEDRLVKTMFREKTSLSGDVPQGLPVIPAGMEPN-FKLINKKPIVASDEELAANHRA 303 Query: 307 RSAKLRAGMRTVE 319 SAKLR + E Sbjct: 304 HSAKLRIIEKIRE 316 >gi|327472730|gb|EGF18157.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus sanguinis SK408] Length = 316 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 100/319 (31%), Positives = 170/319 (53%), Gaps = 15/319 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 M++ H H+ VLL + + L P + +DAT G G+S ++ A D Sbjct: 1 MTNEFH-----HITVLLHETVDQLAVKPDGIYIDATLGGAGHSEYLLSQLGDEGHLYAFD 55 Query: 66 RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120 +D A+ ++ + Y E+ + + F L+ + + GV DG+ +DLGVSS Q+D Sbjct: 56 QDQTAIDNAKKRLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQ 115 Query: 121 GDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS+++ PLDMRM+ ++A +VVN + +DL RI GE+K + +IA I + Sbjct: 116 RERGFSYKQDAPLDMRMNRDAALTAFEVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQA 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R P +TT +L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A Sbjct: 176 RSIKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDL 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L G + V++FHSLEDRL K+ F S + + + +++K ++P++E Sbjct: 236 LAVDGRIAVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKLELVSRKPILPSKE 295 Query: 299 DVAFNRRSRSAKLRAGMRT 317 ++ N R+ SAKLR + Sbjct: 296 ELESNNRAHSAKLRVARKI 314 >gi|262527565|sp|P62471|RSMH_LACJO RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 315 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 108/311 (34%), Positives = 169/311 (54%), Gaps = 13/311 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76 H VLL + I LNP G + +DATFG GG++R VI D+D +A+S +E Sbjct: 4 KHKSVLLHETIDNLNPKDGGLYVDATFGGGGHARYLLSKLNKGTVIGFDQDEYAISMAKE 63 Query: 77 TMRD-----YKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSF 127 + + + L F L++ + + G+DG+ +DLGVSS Q D +RGFS+ Sbjct: 64 SFAKELQVGAEPRLMLVHDNFCHLKENLVELGISDGIDGIYYDLGVSSPQFDQPERGFSY 123 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + LDMRM S + A +VN + K+L+ +L G+EK + +IA IV RR+ P Sbjct: 124 RFDARLDMRMDQSQELDAYTIVNTWSQKELSDVLYKYGDEKFSRQIARKIVDRRKEKPIV 183 Query: 187 TTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT DL +I+ + ++ + HPA +SFQA+R+ VN+E+ L + L A K LK GG + Sbjct: 184 TTFDLVDVIKDAIPAYARRSGGHPAKKSFQAIRVAVNDELGVLQESLEEAIKLLKPGGRI 243 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V++F S ED++VKK F S + + + I++K ++ + +++ N R Sbjct: 244 SVITFQSHEDKIVKKIFKKYSEVEIPRGMPMVPADSKPTLRLISRKPIMASSDELEENNR 303 Query: 306 SRSAKLRAGMR 316 S SAKLR + Sbjct: 304 SHSAKLRVAEK 314 >gi|327459305|gb|EGF05651.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus sanguinis SK1] Length = 316 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 100/319 (31%), Positives = 170/319 (53%), Gaps = 15/319 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 M++ H H+ VLL + + L P + +DAT G G+S ++ A D Sbjct: 1 MTNEFH-----HITVLLHETVDQLAVKPDGIYIDATLGGAGHSEYLLSQLGDEGHLYAFD 55 Query: 66 RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120 +D A+ ++ + Y E+ + + F L+ + + GV DG+ +DLGVSS Q+D Sbjct: 56 QDQTAIDNAKKRLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQ 115 Query: 121 GDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS+++ PLDMRM+ ++A +VVN + +DL RI GE+K + +IA I + Sbjct: 116 RERGFSYKQDAPLDMRMNREAALTAFEVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQA 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R P +TT +L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A Sbjct: 176 RSIKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDL 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L G + V++FHSLEDRL K+ F S + + + +++K ++P++E Sbjct: 236 LAVDGRIAVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKLELVSRKPILPSKE 295 Query: 299 DVAFNRRSRSAKLRAGMRT 317 ++ N R+ SAKLR + Sbjct: 296 ELESNNRAHSAKLRVARKI 314 >gi|322391390|ref|ZP_08064860.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus peroris ATCC 700780] gi|321145816|gb|EFX41207.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus peroris ATCC 700780] Length = 316 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 106/319 (33%), Positives = 172/319 (53%), Gaps = 15/319 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M+ H HV V+L + I +L+ P + +DAT G G+S ++ A D Sbjct: 1 MTKEFH-----HVTVMLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFD 55 Query: 66 RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120 +D A+ Q+ + Y E+ + + F L+D + D GV DG+ +DLGVSS Q+D Sbjct: 56 QDQNAIDNAQKRLAPYIEKGMVTFIKDNFRHLKDRLHDLGVTEIDGICYDLGVSSPQLDQ 115 Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS++K PLDMRM+ ++A +VVN + DL RI GE+K + +IA I + Sbjct: 116 RERGFSYKKDAPLDMRMNQEASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQA 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R+ P +TT +L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A + Sbjct: 176 RELKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIEL 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L G + V++FHSLEDRL K+ F S + + +++K ++P++E Sbjct: 236 LALDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMGLVSRKPILPSKE 295 Query: 299 DVAFNRRSRSAKLRAGMRT 317 ++ N RS SAKLR + Sbjct: 296 ELEANNRSHSAKLRVARKI 314 >gi|307704193|ref|ZP_07641116.1| S-adenosyl-methyltransferase MraW [Streptococcus mitis SK597] gi|307622224|gb|EFO01238.1| S-adenosyl-methyltransferase MraW [Streptococcus mitis SK597] Length = 316 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 106/319 (33%), Positives = 170/319 (53%), Gaps = 15/319 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M+ H HV VLL + I +L+ P + +DAT G G+S ++ A D Sbjct: 1 MTKEFH-----HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFD 55 Query: 66 RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120 +D A+ Q+ + Y E+ + + F LQ + + GV DG+ +DLGVSS Q+D Sbjct: 56 QDQNAIDNAQQRLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQ 115 Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS++K PLDMRM+ ++A +VVN + DL RI GE+K + +IA I + Sbjct: 116 RERGFSYKKDAPLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQA 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R+ P +TT +L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A Sbjct: 176 REVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDM 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L G + V++FHSLEDRL K+ F S + + + +++K ++P+ E Sbjct: 236 LALDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAE 295 Query: 299 DVAFNRRSRSAKLRAGMRT 317 ++ N RS SAKLR + Sbjct: 296 ELEANNRSHSAKLRVARKI 314 >gi|257063602|ref|YP_003143274.1| S-adenosyl-methyltransferase MraW [Slackia heliotrinireducens DSM 20476] gi|256791255|gb|ACV21925.1| S-adenosyl-methyltransferase MraW [Slackia heliotrinireducens DSM 20476] Length = 318 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 114/311 (36%), Positives = 174/311 (55%), Gaps = 14/311 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS---FCKMGSNVIALDRDPFAVSCGQE 76 H PVLL + + L+ +D+T G G+S S +I +D+D A+ ++ Sbjct: 7 HTPVLLAECLEHLHLQTQHTFVDSTLGGAGHSYEAAKLLGPDSLLIGIDQDQMALDAARK 66 Query: 77 TMR----DYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 + D + L + F L D + + G+D ++FDLGVSS QID RGFSF++ Sbjct: 67 RLETLGEDAAPKLKLLRGNFGNLDDLLVEACVPGIDAILFDLGVSSPQIDFVSRGFSFKE 126 Query: 130 SGPLDMRMSCSGIS--ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 PLDMRM + A++++N N ++LTRI+ +E+ ASRIA IV R++AP +T Sbjct: 127 DAPLDMRMDPGNQTINAAELINTLNEQELTRIIYENSDERWASRIASFIVAARETAPIET 186 Query: 188 TQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 + L +I+ + ++ HPA R+FQALRI VN+E+ L GL +A + L GG + Sbjct: 187 SGQLVDIIKAAIPASARRAGGHPAKRTFQALRIEVNSELTVLKSGLEAAIRWLNPGGRVA 246 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V+S+HSLEDR+VK FA S + V + IT+K ++PT+E++A N R Sbjct: 247 VISYHSLEDRIVKNMFAEHSRTCTCPPELPVCVCGAKPVLKVITRKPILPTEEEIANNPR 306 Query: 306 SRSAKLRAGMR 316 +RSAKLR + Sbjct: 307 ARSAKLRVAEK 317 >gi|328945057|gb|EGG39213.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus sanguinis SK1087] Length = 316 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 100/319 (31%), Positives = 170/319 (53%), Gaps = 15/319 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 M++ H H+ VLL + + L P + +DAT G G+S ++ A D Sbjct: 1 MTNEFH-----HITVLLHETVDQLAVKPDGIYVDATLGGAGHSEYLLSQLGDEGHLYAFD 55 Query: 66 RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120 +D A+ ++ + Y E+ + + F L+ + + GV DG+ +DLGVSS Q+D Sbjct: 56 QDQMAIDNAKKRLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQ 115 Query: 121 GDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS+++ PLDMRM+ ++A +VVN + +DL RI GE+K + +IA I + Sbjct: 116 RERGFSYKQDAPLDMRMNREAALTAFEVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQA 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R P +TT +L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A Sbjct: 176 RSVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDL 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L G + V++FHSLEDRL K+ F S + + + +++K ++P++E Sbjct: 236 LAVDGRIAVITFHSLEDRLTKQLFKDASTVDVPKGLPFIPDELQPKLELVSRKPILPSKE 295 Query: 299 DVAFNRRSRSAKLRAGMRT 317 ++ N R+ SAKLR + Sbjct: 296 ELESNNRAHSAKLRVARKI 314 >gi|259047019|ref|ZP_05737420.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Granulicatella adiacens ATCC 49175] gi|259036338|gb|EEW37593.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Granulicatella adiacens ATCC 49175] Length = 314 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 104/312 (33%), Positives = 171/312 (54%), Gaps = 11/312 (3%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74 + H+ VLL + + L+ P + +D T G G+S+ ++ D+D A+ Sbjct: 1 MFKHITVLLHETVDALSIKPDGIYVDCTLGGAGHSQYLLSQLTTGHLYCFDQDMQAIQHA 60 Query: 75 QETMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQK 129 + + + + + A F QL+ + GV DG+++DLGVSS Q+D +RGFS+ + Sbjct: 61 KARLAKEVSEGKVTFIHANFRQLKIELGKLGVSKVDGILYDLGVSSPQLDQIERGFSYHQ 120 Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 + LDMRM S ++A ++VN+ + +L RI GEEK + +IA I + R +TT Sbjct: 121 NAKLDMRMDQSAPLTAEEIVNEWSYDELVRIFYRYGEEKFSKQIARNIERIRAQHRIETT 180 Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L +I+ ++ + + HPA R FQA+RI VN+E+ + L A + + GG + V Sbjct: 181 GELVDIIRDSIPAAARRKGGHPAKRIFQAIRIAVNDELAAIEDSLEQAFEVVSVGGRISV 240 Query: 248 VSFHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 +SFHSLEDR+VK F +S K ++P+ A FQ + KK ++P+ E++ N R Sbjct: 241 ISFHSLEDRIVKTMFKQQSTVEKAPKNLPILPTEEEKAPFQLVNKKPILPSLEEITENSR 300 Query: 306 SRSAKLRAGMRT 317 S+SAKLR + Sbjct: 301 SQSAKLRVIEKI 312 >gi|261367518|ref|ZP_05980401.1| S-adenosyl-methyltransferase MraW [Subdoligranulum variabile DSM 15176] gi|282570299|gb|EFB75834.1| S-adenosyl-methyltransferase MraW [Subdoligranulum variabile DSM 15176] Length = 307 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 116/305 (38%), Positives = 165/305 (54%), Gaps = 9/305 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77 H+PVLL+ + L P + LD T G G+S K +I+LD+DP AV+ E Sbjct: 5 HIPVLLQPCLDGLAIDPTGIYLDGTAGGAGHSMQIAKRLTTGRLISLDQDPDAVAVATER 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++ Q QA F + + V+G + DLGVSS Q+D RGFS+ PLD Sbjct: 65 LKGLPAQV--VQANFRDAARVLAELSIPAVNGALLDLGVSSHQLDDAARGFSYHADAPLD 122 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRMS G +A+D+VN + ++LTRIL GEE A +IA IV R P TT L+ L Sbjct: 123 MRMSQQGPTAADLVNTLDREELTRILRDYGEEPYAWQIAGKIVATRAEQPITTTLQLADL 182 Query: 195 IQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 + V ++ + +PA R+FQA+RI VN+E++ L +GL + L GG L V++FHSL Sbjct: 183 VASAVPPAERRKAKNPARRTFQAIRIAVNSELDVLNEGLDAIFNCLAPGGRLCVITFHSL 242 Query: 254 EDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 EDRLVK F + + I + + IT+K + E++ NRR+RSAKLR Sbjct: 243 EDRLVKNKFRRWAQRCTCPPEQPICTCGGVPKAKLITRKPIEADAEELEHNRRARSAKLR 302 Query: 313 AGMRT 317 + Sbjct: 303 VLEKV 307 >gi|309799924|ref|ZP_07694128.1| S-adenosyl-methyltransferase MraW [Streptococcus infantis SK1302] gi|308116451|gb|EFO53923.1| S-adenosyl-methyltransferase MraW [Streptococcus infantis SK1302] Length = 316 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 105/319 (32%), Positives = 172/319 (53%), Gaps = 15/319 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M+ H HV V+L + I +L+ P + +DAT G G+S ++ A D Sbjct: 1 MTKEFH-----HVTVMLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFD 55 Query: 66 RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120 +D A+ Q+ + Y E+ + + F LQ + + GV DG+ +DLGVSS Q+D Sbjct: 56 QDQNAIDNAQKRLAPYIEKGMVTFIKDNFRHLQLRLQEAGVEEIDGICYDLGVSSPQLDQ 115 Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS++K PLDMRM+ ++A +VVN + DL RI GE+K + +IA I + Sbjct: 116 RERGFSYKKDAPLDMRMNQEASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQA 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R+ P +TT +L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A + Sbjct: 176 RELKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMEL 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L G + V++FHSLEDRL K+ F S + + + +++K ++P++E Sbjct: 236 LAVDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSKE 295 Query: 299 DVAFNRRSRSAKLRAGMRT 317 ++ N RS SAKLR + Sbjct: 296 ELEANNRSHSAKLRVARKI 314 >gi|315611782|ref|ZP_07886704.1| S-adenosyl-methyltransferase MraW [Streptococcus sanguinis ATCC 49296] gi|315316197|gb|EFU64227.1| S-adenosyl-methyltransferase MraW [Streptococcus sanguinis ATCC 49296] Length = 316 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 106/319 (33%), Positives = 170/319 (53%), Gaps = 15/319 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M+ H HV VLL + I +L+ P + +DAT G G+S ++ A D Sbjct: 1 MTKEFH-----HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFD 55 Query: 66 RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120 +D A+ Q+ + Y E+ + + F LQ + + GV DG+ +DLGVSS Q+D Sbjct: 56 QDQNAIDNAQKRLAPYIEKGMVTFIKDNFRHLQARLQEAGVQEIDGICYDLGVSSPQLDQ 115 Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS++K PLDMRM+ ++A +VVN + DL RI GE+K + +IA I + Sbjct: 116 RERGFSYKKDAPLDMRMNQEASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQA 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R+ P +TT +L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A Sbjct: 176 REVKPIETTAELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDM 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L G + V++FHSLEDRL K+ F S + + + +++K ++P+ E Sbjct: 236 LALDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAE 295 Query: 299 DVAFNRRSRSAKLRAGMRT 317 ++ N RS SAKLR + Sbjct: 296 ELEANNRSHSAKLRVARKI 314 >gi|256003312|ref|ZP_05428303.1| S-adenosyl-methyltransferase MraW [Clostridium thermocellum DSM 2360] gi|281417697|ref|ZP_06248717.1| S-adenosyl-methyltransferase MraW [Clostridium thermocellum JW20] gi|255992602|gb|EEU02693.1| S-adenosyl-methyltransferase MraW [Clostridium thermocellum DSM 2360] gi|281409099|gb|EFB39357.1| S-adenosyl-methyltransferase MraW [Clostridium thermocellum JW20] gi|316940267|gb|ADU74301.1| S-adenosyl-methyltransferase MraW [Clostridium thermocellum DSM 1313] Length = 313 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 112/309 (36%), Positives = 169/309 (54%), Gaps = 11/309 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H PVLLE+ I+ L P V +D T G G+S K +I LD+D FA+ QE Sbjct: 5 HKPVLLEETISNLAIKPDGVYIDGTVGGAGHSGEILKRLDESGTLIGLDQDEFAIKTSQE 64 Query: 77 TMR--DYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + K + L F +++ VDG++ DLGVSS Q+D RGFS+ K Sbjct: 65 KLAQINSKAKIILVNTNFVNIKEVCQKNNIESVDGILLDLGVSSHQLDEASRGFSYNKDA 124 Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM G ++A +VN+ +++ RI+ GEEK ASRIA IV+ R+ +TT + Sbjct: 125 PLDMRMDRRGELTAKKIVNEYGREEIKRIIRDYGEEKWASRIAEFIVEARKKKEIETTGE 184 Query: 191 LSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I+ + ++ HPA R+FQALRI VNNE+ LA+ + + LK GG +++ Sbjct: 185 LVDIIKAAIPSSARRGGPHPAKRTFQALRIAVNNELGILAKTIEDGTELLKPGGRFCIIT 244 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK F + + + + + + +K +VP ++++ N R+RS Sbjct: 245 FHSLEDRIVKDEFNKKVNPCICPKQFPVCTCGRKPEGVLVNRKPIVPKEKELEENPRARS 304 Query: 309 AKLRAGMRT 317 AKLR + Sbjct: 305 AKLRVLEKI 313 >gi|57650291|ref|YP_186055.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus COL] gi|151221301|ref|YP_001332123.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus str. Newman] gi|68565417|sp|Q5HGQ2|RSMH_STAAC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262826643|sp|A6QG79|RSMH_STAAE RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|57284477|gb|AAW36571.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus COL] gi|150374101|dbj|BAF67361.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus str. Newman] Length = 311 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 100/308 (32%), Positives = 161/308 (52%), Gaps = 9/308 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H+ V+L + I LN V +D T G G++ +IA+D+D A+ Sbjct: 1 MFHHISVMLNETIDYLNVKENGVYIDCTLGGAGHALYLLNQLNDDGRLIAIDQDQTAIDN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E ++D+ + + + F +L + D + VDG+ +DLGVSS Q+D +RGFS+ Sbjct: 61 AKEVLKDHLHRVTFVHSNFRELTQILKDLNIEKVDGIYYDLGVSSPQLDIPERGFSYHHD 120 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM + ++A ++VN + + L +I GEEK + +IA I R+ P TT Sbjct: 121 ATLDMRMDQTQELTAYEIVNNWSYEALVKIFYRYGEEKFSKQIARRIEAHREQQPITTTL 180 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I++ + + HPA R FQALRI VN+E+ + A + +K G + V+ Sbjct: 181 ELVDIIKEGIPAKARRKGGHPAKRVFQALRIAVNDELSAFEDSIEQAIELVKVDGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F R + A+ + + +K + T+ED+ N R+R Sbjct: 241 TFHSLEDRLCKQVFQEYEKGPEVPRGLPVIPEAYTPKLKRVNRKPITATEEDLDDNNRAR 300 Query: 308 SAKLRAGM 315 SAKLR Sbjct: 301 SAKLRVAE 308 >gi|310779075|ref|YP_003967408.1| S-adenosyl-methyltransferase MraW [Ilyobacter polytropus DSM 2926] gi|309748398|gb|ADO83060.1| S-adenosyl-methyltransferase MraW [Ilyobacter polytropus DSM 2926] Length = 314 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 108/305 (35%), Positives = 168/305 (55%), Gaps = 10/305 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H+PVL + I L G V LD T G GG+S K +I++D+D A+ E Sbjct: 10 HIPVLYRETIENLVKNEGGVYLDCTLGGGGHSEGILKALSEKGKLISIDQDQQALDFAGE 69 Query: 77 TMRDYKEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + Y +++ ++ F L + +DG++ D+GVSS Q+D +RGFS++ L Sbjct: 70 RLGKYGKKWESYKDNFENLDTVLYLAGYDKIDGILMDIGVSSTQLDDPERGFSYRFDTKL 129 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ + +SA +VVNQ L++I+ GEE+ A +IA I + R P +TT DL Sbjct: 130 DMRMNKNAKVSAYEVVNQYEEGRLSKIIYDYGEERHARKIARLICEIRAEKPIETTGDLV 189 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I++ HPA ++FQA+RI VN E++ L + + A ALK GG L +++FHS Sbjct: 190 EIIKRAYKGKSP--KHPAMKTFQAIRIEVNRELDVLERSIDKAINALKPGGRLAIITFHS 247 Query: 253 LEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK F S + + + A + IT+K + P +++ FN+R+RS+KL Sbjct: 248 LEDRMVKNKFKEMSVDCICPPELPVCRCDNKAKVKIITRKPITPKDDELKFNKRARSSKL 307 Query: 312 RAGMR 316 R R Sbjct: 308 RVVER 312 >gi|322375922|ref|ZP_08050433.1| S-adenosyl-methyltransferase MraW [Streptococcus sp. C300] gi|321279190|gb|EFX56232.1| S-adenosyl-methyltransferase MraW [Streptococcus sp. C300] Length = 316 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 106/319 (33%), Positives = 169/319 (52%), Gaps = 15/319 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M+ H HV VLL + I +L+ P +DAT G G+S ++ A D Sbjct: 1 MTKEFH-----HVTVLLHETIDMLDVKPDGTYVDATLGGAGHSEYLLSKLSEKGHLYAFD 55 Query: 66 RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120 +D A+ Q+ + Y E+ + + F LQ + + GV DG+ +DLGVSS Q+D Sbjct: 56 QDQNAIDNAQKRLAPYIEKGMVTFIKDNFRHLQARLQEAGVQEIDGICYDLGVSSPQLDQ 115 Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS++K PLDMRM+ ++A +VVN + DL RI GE+K + +IA I + Sbjct: 116 RERGFSYKKDAPLDMRMNQEASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQA 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R+ P +TT +L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A Sbjct: 176 REVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDM 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L G + V++FHSLEDRL K+ F S + + + +++K ++P+ E Sbjct: 236 LALDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAE 295 Query: 299 DVAFNRRSRSAKLRAGMRT 317 ++ N RS SAKLR + Sbjct: 296 ELEANNRSHSAKLRVARKI 314 >gi|306821091|ref|ZP_07454707.1| S-adenosyl-methyltransferase MraW [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550784|gb|EFM38759.1| S-adenosyl-methyltransferase MraW [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 309 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 113/307 (36%), Positives = 162/307 (52%), Gaps = 9/307 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76 +H VLL + + LN G +DATFG GG+S +N + D+D A+ G Sbjct: 4 NHKSVLLYETVDSLNVKEGNTYVDATFGGGGHSGYLLSKANNINLYVFDQDEEAIKNGMN 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 F ++ + ++ + DG++ DLGVSS Q+D +RGFS+ PL Sbjct: 64 NFAG-NNNIHFINTNFVNIKSALYERKITKIDGLIADLGVSSYQLDNAERGFSYMNDAPL 122 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + ++A DVVN + + L+ I+ GEE A +IA IV RR TT +L Sbjct: 123 DMRMDKNSPLTAYDVVNNYSKEQLSDIIRRYGEENWADKIAQVIVDRRGQKSIDTTFELV 182 Query: 193 SLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+K + ++ HPA R+FQA+RI VNNEI+ L + L A + L +GG L V++FH Sbjct: 183 DVIEKAIPKKLRDKNKHPAKRTFQAIRIEVNNEIKILEKFLCDAFELLSSGGRLSVITFH 242 Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR VK F G + + I ITKK +VP+ E++ N RSRSAK Sbjct: 243 SLEDRAVKNIFKELVGGCICPKEFPICMCNRKEEATIITKKPIVPSDEELKNNPRSRSAK 302 Query: 311 LRAGMRT 317 LR + Sbjct: 303 LRVIEKI 309 >gi|312866364|ref|ZP_07726582.1| S-adenosyl-methyltransferase MraW [Streptococcus downei F0415] gi|311098058|gb|EFQ56284.1| S-adenosyl-methyltransferase MraW [Streptococcus downei F0415] Length = 316 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 108/321 (33%), Positives = 178/321 (55%), Gaps = 17/321 (5%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 M++ H HV VLL + + +L P P + +DAT G G+S ++ D Sbjct: 1 MTNEFH-----HVSVLLHETVDMLAPKPDGIYVDATLGGAGHSAYLLSKLGPKGHLYCFD 55 Query: 66 RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120 +D A+ Q ++DY ++ + + F L+ + ++GV DG+++DLGVSS Q+D Sbjct: 56 QDQSAIDNAQVKLKDYVDRGMVTFIKDNFRNLKADLAEEGVTQIDGILYDLGVSSPQLDQ 115 Query: 121 GDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS+++ PLDMRM+ +SA DVVN + +DL +I GE+K + +IA I + Sbjct: 116 RERGFSYKQDAPLDMRMNQEADLSAYDVVNTYSYQDLVKIFFKYGEDKFSKQIARKIEQA 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R+S P +TT +L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A + Sbjct: 176 RKSKPIETTTELTEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQALEL 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297 L G + V++FHSLEDRL K+ F S V IP P + + +K ++P+Q Sbjct: 236 LALDGRISVITFHSLEDRLTKQIFKEASSVDVPKGLPFIPEEMQPKI-ALVNRKPILPSQ 294 Query: 298 EDVAFNRRSRSAKLRAGMRTV 318 +++ N R+ SAKLR + Sbjct: 295 GELSVNNRAHSAKLRVAKKIR 315 >gi|307708181|ref|ZP_07644648.1| S-adenosyl-methyltransferase MraW [Streptococcus mitis NCTC 12261] gi|307615627|gb|EFN94833.1| S-adenosyl-methyltransferase MraW [Streptococcus mitis NCTC 12261] Length = 316 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 106/319 (33%), Positives = 170/319 (53%), Gaps = 15/319 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M+ H HV VLL + I +L+ P + +DAT G G+S ++ A D Sbjct: 1 MTKEFH-----HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFD 55 Query: 66 RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120 +D A+ Q+ + Y E+ + + F LQ + + GV DG+ +DLGVSS Q+D Sbjct: 56 QDQNAIDNAQKRLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQ 115 Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS++K PLDMRM+ ++A +VVN + DL RI GE+K + +IA I + Sbjct: 116 RERGFSYKKDAPLDMRMNQEASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQA 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R+ P +TT +L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A Sbjct: 176 REVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDM 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L G + V++FHSLEDRL K+ F S + + + +++K ++P+ E Sbjct: 236 LALDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAE 295 Query: 299 DVAFNRRSRSAKLRAGMRT 317 ++ N RS SAKLR + Sbjct: 296 ELEANNRSHSAKLRVARKI 314 >gi|289168599|ref|YP_003446868.1| S-adenosyl-methyltransferase mraW [Streptococcus mitis B6] gi|288908166|emb|CBJ23008.1| S-adenosyl-methyltransferase mraW [Streptococcus mitis B6] Length = 316 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 107/319 (33%), Positives = 171/319 (53%), Gaps = 15/319 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M+ H HV VLL + I +L+ P + +DAT G G+S ++ A D Sbjct: 1 MTKEFH-----HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFD 55 Query: 66 RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120 +D A+ Q+ + Y E+ + + F LQ + + GV DG+ +DLGVSS Q+D Sbjct: 56 QDQNAIDNAQKRLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQ 115 Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS++K PLDMRM+ ++A +VVN + DL RI GE+K + +IA I + Sbjct: 116 RERGFSYKKDAPLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQA 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R+ P +TT +L+ +I+ + N+ HPA + FQA+RI VN+E+ + ++ A Sbjct: 176 REVKPIETTTELAEIIKSAKPAKELKNKGHPAKQIFQAIRIEVNDELGAADESIQQAMDM 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L G + V++FHSLEDRL K+ F S + + + +++K ++P+ E Sbjct: 236 LALDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAE 295 Query: 299 DVAFNRRSRSAKLRAGMRT 317 ++ N RS SAKLR + Sbjct: 296 ELEANNRSHSAKLRVARKI 314 >gi|114773347|ref|ZP_01450551.1| S-adenosyl-methyltransferase MraW [alpha proteobacterium HTCC2255] gi|114546281|gb|EAU49192.1| S-adenosyl-methyltransferase MraW [alpha proteobacterium HTCC2255] Length = 337 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 143/332 (43%), Positives = 204/332 (61%), Gaps = 8/332 (2%) Query: 9 MSSAIHHTIG-DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDR 66 MS A + H+PVLL ++ + P + +D TFGAGGYSR+ G++ + A+DR Sbjct: 1 MSIAQSYPPSSPHIPVLLTPILDSVKPIS-GIWVDGTFGAGGYSRAILDAGADTLYAIDR 59 Query: 67 DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDR 123 DP + ++ +DY + L TFS L +V + G +DGVV D+GVSSMQ+D +R Sbjct: 60 DPEVFARAKKWAKDYDGRLKLIHGTFSDLDTHVKNAGTDLIDGVVLDIGVSSMQLDQAER 119 Query: 124 GFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 GFSF K GPLDMRM SG+SA+D+VN K L ++ + GEE+ + RIA IVK R++ Sbjct: 120 GFSFMKDGPLDMRMGQSGMSAADIVNSVEEKVLADLIYLYGEERASRRIARNIVKSRENL 179 Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 F+TT L +I+ ++ K + HPATR+FQALRI VN+E+ +L GLR+AE L+ GG Sbjct: 180 KFETTFQLVKVIEASLPRPKPGQTHPATRTFQALRIAVNDELGQLVSGLRAAENILREGG 239 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHP-AVFQSITKKVVVPTQEDVAF 302 LL VV+FHSLEDR+VK+F +RSG P + A F+ I +K + ++++ Sbjct: 240 LLAVVTFHSLEDRIVKRFIQARSGNNPRGNRYQPEKTNDIATFEKIGRKAIAANKDEINS 299 Query: 303 NRRSRSAKLRAGMRTVERSIEDDSF-VHLPRL 333 N R+RSAKLR R S E +F + LP+ Sbjct: 300 NPRARSAKLRLARRLNTTSGEFSAFDIGLPKF 331 >gi|327462427|gb|EGF08752.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus sanguinis SK1057] Length = 316 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 100/319 (31%), Positives = 170/319 (53%), Gaps = 15/319 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 M++ H H+ VLL + + L P + +DAT G G+S ++ A D Sbjct: 1 MTNEFH-----HITVLLHETVDQLAVKPEGIYVDATLGGAGHSEYLLSQLGDEGHLYAFD 55 Query: 66 RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120 +D A+ ++ + Y E+ + + F L+ + + GV DG+ +DLGVSS Q+D Sbjct: 56 QDQTAIDNAKKRLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQ 115 Query: 121 GDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS+++ PLDMRM+ ++A +VVN + +DL RI GE+K + +IA I + Sbjct: 116 RERGFSYKQDAPLDMRMNRDAALTAFEVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQA 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R P +TT +L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A Sbjct: 176 RSVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDL 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L G + V++FHSLEDRL K+ F S + + + +++K ++P++E Sbjct: 236 LAVDGRIAVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKLELVSRKPILPSKE 295 Query: 299 DVAFNRRSRSAKLRAGMRT 317 ++ N R+ SAKLR + Sbjct: 296 ELESNNRAHSAKLRVARKI 314 >gi|307711383|ref|ZP_07647801.1| S-adenosyl-methyltransferase MraW [Streptococcus mitis SK321] gi|307616801|gb|EFN95983.1| S-adenosyl-methyltransferase MraW [Streptococcus mitis SK321] Length = 316 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 106/319 (33%), Positives = 171/319 (53%), Gaps = 15/319 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M+ H HV VLL + I +L+ P + +DAT G G+S ++ A D Sbjct: 1 MTKEFH-----HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFD 55 Query: 66 RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120 +D A+ Q+ + Y E+ + + F LQ + + GV DG+ +DLGVSS Q+D Sbjct: 56 QDQNAIDNAQKRLAPYIEKGMVTFIKDNFRHLQTRLHEAGVQEIDGICYDLGVSSPQLDQ 115 Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS++K PLDMRM+ ++A +VVN + DL RI GE+K + +IA I + Sbjct: 116 RERGFSYKKDAPLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQA 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R+ P +TT +L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A + Sbjct: 176 REVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMEM 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L G + V++FHSLEDRL K+ F S + + + +++K ++P+ E Sbjct: 236 LALDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAE 295 Query: 299 DVAFNRRSRSAKLRAGMRT 317 ++ N RS SAKLR + Sbjct: 296 ELEANNRSHSAKLRVARKI 314 >gi|306830125|ref|ZP_07463309.1| S-adenosyl-methyltransferase MraW [Streptococcus mitis ATCC 6249] gi|304427651|gb|EFM30747.1| S-adenosyl-methyltransferase MraW [Streptococcus mitis ATCC 6249] Length = 316 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 106/319 (33%), Positives = 170/319 (53%), Gaps = 15/319 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M+ H HV VLL + I +L+ P + +DAT G G+S ++ A D Sbjct: 1 MTKEFH-----HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFD 55 Query: 66 RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120 +D A+ Q+ + Y E+ + + F LQ + + GV DG+ +DLGVSS Q+D Sbjct: 56 QDQNAIDNAQKRLAPYIEKGMVTFIKDNFRHLQARLLEAGVQEIDGICYDLGVSSPQLDQ 115 Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS++K PLDMRM+ ++A +VVN + DL RI GE+K + +IA I + Sbjct: 116 RERGFSYKKDAPLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQA 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R+ P +TT +L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A Sbjct: 176 REVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDM 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L G + V++FHSLEDRL K+ F S + + + +++K ++P+ E Sbjct: 236 LALDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAE 295 Query: 299 DVAFNRRSRSAKLRAGMRT 317 ++ N RS SAKLR + Sbjct: 296 ELEANNRSHSAKLRVARKI 314 >gi|322412440|gb|EFY03348.1| S-adenosyl-methyltransferase MraW [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 337 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 107/328 (32%), Positives = 176/328 (53%), Gaps = 15/328 (4%) Query: 1 MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-- 58 ++ + K M+ H HV VLL + + +L+ P + +DAT G G+S Sbjct: 14 LKYGTIKVMTKEFH-----HVTVLLHETVDMLDIKPNGIYVDATLGGSGHSAYLLSKLSE 68 Query: 59 -SNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLG 112 ++ D+D A+ Q ++ Y K Q + + F L+ + GV DG+++DLG Sbjct: 69 QGHLYCFDQDQKAIDNAQLILKPYIDKGQVTFIKDNFRHLKARLEALGVTEIDGILYDLG 128 Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASR 171 VSS Q+D +RGFS++++ PLDMRM + ++A DVVN DL +I GE+K + + Sbjct: 129 VSSPQLDEKERGFSYKQNAPLDMRMDRQAPLTAYDVVNTYPFNDLVKIFFKYGEDKFSKQ 188 Query: 172 IAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQ 230 IA I + R P +TT +L+ LI+ + + HPA + FQA+RI VN+E+ + Sbjct: 189 IARKIEQARAIKPIETTTELAELIKAAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADE 248 Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK 290 ++ A + L G + V++FHSLEDRL K+ F S + +F+ +++ Sbjct: 249 SIQDAMELLALDGRISVITFHSLEDRLTKQLFKEVSTVDVPKGLPFIPEDMKPIFELVSR 308 Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMRTV 318 K ++P+QE++A N R+ SAKLR + Sbjct: 309 KPILPSQEELAANNRAHSAKLRVAKKIR 336 >gi|218289891|ref|ZP_03494081.1| S-adenosyl-methyltransferase MraW [Alicyclobacillus acidocaldarius LAA1] gi|218240031|gb|EED07217.1| S-adenosyl-methyltransferase MraW [Alicyclobacillus acidocaldarius LAA1] Length = 316 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 116/306 (37%), Positives = 186/306 (60%), Gaps = 9/306 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VLLE+ + L P PG V +DAT G GG++ + G VIA D+D A++ + Sbjct: 5 HETVLLEEAVEALRPRPGGVYVDATLGGGGHTARLLERSAPGGAVIAFDQDETAIAHAEP 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 R Y + +L +A F+++++ + GV DGV+FDLGVSS Q D +RGFS+ GPL Sbjct: 65 LKRQYPGRLTLVKANFAEMEERLRALGVTAVDGVLFDLGVSSPQFDLPERGFSYWHEGPL 124 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM ++A ++VN+ + ++L RI+ GEE+ A+ IA AI + R P +TT +L+ Sbjct: 125 DMRMDRHQPLTAREIVNEWDEQELARIIREYGEERFATAIARAIARARSKKPIETTTELA 184 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +++ + + + + HPA R+FQA+RI VN+E+ L +G+ +A +AL+ GG L V++FH Sbjct: 185 EIVKSAIPAAARRSGPHPARRTFQAIRIAVNDELGALERGMEAAFRALRPGGRLSVITFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR VK+ F + + + + + + +++K V P+ E++ N R+RSAK Sbjct: 245 SLEDRAVKRLFQTWAQGCICPPEFPVCQCGRKPLGRMVSRKPVTPSSEELERNPRARSAK 304 Query: 311 LRAGMR 316 LRA + Sbjct: 305 LRAFEK 310 >gi|223984258|ref|ZP_03634404.1| hypothetical protein HOLDEFILI_01698 [Holdemania filiformis DSM 12042] gi|223963789|gb|EEF68155.1| hypothetical protein HOLDEFILI_01698 [Holdemania filiformis DSM 12042] Length = 312 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 118/310 (38%), Positives = 179/310 (57%), Gaps = 9/310 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74 + H VLL++ I LN + +D T G GG+S + ++ A D D A++ Sbjct: 1 MTRHYSVLLQESIDALNCQSDGIYVDGTLGRGGHSLEIARRLQNGHLYAFDLDEQALAES 60 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + + + +L +A F+Q+++ + +GV DGVV DLGVSS Q D G+RGFS++ Sbjct: 61 AQRLAEVSGRVTLIRANFAQMREELNARGVMSVDGVVMDLGVSSPQFDDGERGFSYRYDA 120 Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM S SA ++VN+ + K+L+ +L GEE + IA IV+ R P TT + Sbjct: 121 RLDMRMDQSQPRSAWNLVNELDEKELSALLWKYGEESYSRPIARQIVRARTLHPIDTTFE 180 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I+K + N + HPA ++FQALRI VN E+E L GLR+A +K GG + V++ Sbjct: 181 LVDVIKKALPAKVLNKKGHPAKQTFQALRIAVNGELESLETGLRAAMSLVKPGGRIAVIT 240 Query: 250 FHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 FHSLEDR+VK+ F S K ++PS F+ +++K ++P +E++A N RS Sbjct: 241 FHSLEDRIVKETFRQASSVEKTDPRIPLLPSQIRQPDFRLVSRKPILPGEEELAENNRSH 300 Query: 308 SAKLRAGMRT 317 SAKLR R Sbjct: 301 SAKLRVLERI 310 >gi|315194065|gb|EFU24458.1| S-adenosyl-methyltransferase [Staphylococcus aureus subsp. aureus CGS00] Length = 311 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 100/308 (32%), Positives = 161/308 (52%), Gaps = 9/308 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H+ V+L + I LN V +D T G G++ +IA+D+D A+ Sbjct: 1 MFHHISVMLNETIDYLNIKENGVYIDCTLGGAGHALYLLNQLNDDGRLIAIDQDQTAIDN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E ++D+ + + + F +L + D + VDG+ +DLGVSS Q+D +RGFS+ Sbjct: 61 AKEVLKDHLHKVTFVHSNFRELTQILKDLNIEKVDGIYYDLGVSSPQLDIPERGFSYHHD 120 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM + ++A ++VN + + L +I GEEK + +IA I R+ P TT Sbjct: 121 ATLDMRMDQTQELTAYEIVNNWSYEALVKIFYRYGEEKFSKQIARRIEAHREQQPITTTL 180 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I++ + + HPA R FQALRI VN+E+ + A + +K G + V+ Sbjct: 181 ELVDIIKEGIPAKARRKGGHPAKRVFQALRIAVNDELSAFEDSIEQAIELVKVDGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F R + A+ + + +K + T+ED+ N R+R Sbjct: 241 TFHSLEDRLCKQVFQEYEKGPEVPRGLPVIPEAYTPKLKRVNRKPITATEEDLDDNNRAR 300 Query: 308 SAKLRAGM 315 SAKLR Sbjct: 301 SAKLRVAE 308 >gi|282851645|ref|ZP_06261010.1| S-adenosyl-methyltransferase MraW [Lactobacillus gasseri 224-1] gi|282557613|gb|EFB63210.1| S-adenosyl-methyltransferase MraW [Lactobacillus gasseri 224-1] Length = 315 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 109/311 (35%), Positives = 170/311 (54%), Gaps = 13/311 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76 H VLL + I LNP + +DATFG GG++R + VI D+D +A+S +E Sbjct: 4 KHKSVLLHETIDNLNPKDDGLYVDATFGGGGHARYLLSKLNRGTVIGFDQDEYAISMAKE 63 Query: 77 TMRD-----YKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSF 127 + + + + L F L++ + + G+DG+ +DLGVSS Q D +RGFS+ Sbjct: 64 SFAEELKPGAEPRLILVHDNFCHLKENLVELGISDGIDGIYYDLGVSSPQFDQPERGFSY 123 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + LDMRM S + A +VN + K+L+ IL G+EK + +IA IV RR+ P Sbjct: 124 RFDARLDMRMDQSQELDAYTIVNTWSQKELSDILYKYGDEKFSRQIARKIVDRRREKPIV 183 Query: 187 TTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT DL +I+ + ++ + HPA +SFQA+R+ VNNE+ L + L A K LK GG + Sbjct: 184 TTFDLVDVIKDAIPAYARRSGGHPAKKSFQAIRVAVNNELGVLQESLEEAIKLLKPGGRI 243 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V++F S ED++VKK F S + + + I++K ++ + +++ N R Sbjct: 244 SVITFQSHEDKIVKKIFKKYSEVEIPRGMPMIPADSKPTLRLISRKPIMASSDELEENNR 303 Query: 306 SRSAKLRAGMR 316 S SAKLR + Sbjct: 304 SHSAKLRVAEK 314 >gi|319939729|ref|ZP_08014086.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Streptococcus anginosus 1_2_62CV] gi|319811067|gb|EFW07378.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Streptococcus anginosus 1_2_62CV] Length = 316 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 106/319 (33%), Positives = 169/319 (52%), Gaps = 15/319 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 M++ H HV VLL + I L+ P V +DAT G G+S ++ A D Sbjct: 1 MTNEFH-----HVTVLLHETIDQLDIKPNGVYVDATLGGAGHSEYLLSKLGKNGHLYAFD 55 Query: 66 RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120 +D A+ Q+ + Y EQ + F L+ + + GV DG+ +DLGVSS Q+D Sbjct: 56 QDQTAIEHAQKRLASYVEQGMVTFINDNFRHLKARLNELGVEEIDGICYDLGVSSPQLDE 115 Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS+++ PLDMRM+ ++A +VVNQ + DL RI GE+K + +IA I + Sbjct: 116 RERGFSYKQDAPLDMRMNREAKLTAYEVVNQYSYHDLVRIFFKYGEDKFSKQIARKIEQM 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R+ +TT +L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A Sbjct: 176 REKKLIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDL 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L G + V++FHSLEDRL K+ F S + + +T+K ++P++E Sbjct: 236 LAVDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPENLQPKMKLVTRKPILPSKE 295 Query: 299 DVAFNRRSRSAKLRAGMRT 317 ++ N R+ SAKLR + Sbjct: 296 ELDNNNRAHSAKLRVAQKV 314 >gi|312863799|ref|ZP_07724037.1| S-adenosyl-methyltransferase MraW [Streptococcus vestibularis F0396] gi|311101335|gb|EFQ59540.1| S-adenosyl-methyltransferase MraW [Streptococcus vestibularis F0396] Length = 316 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 109/321 (33%), Positives = 172/321 (53%), Gaps = 17/321 (5%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M++ H HV VLL + + +L+ P + +DAT G G+S ++ D Sbjct: 1 MTNEFH-----HVTVLLHETVDMLDIKPDGIYVDATLGGAGHSSYLLSQLSEKGHLYCFD 55 Query: 66 RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120 +D A+ Q ++DY ++ + + F L+ + GV DG+++DLGVSS Q+D Sbjct: 56 QDQKAIDNAQVRLKDYIDKGMVTFIKDNFRNLRSNLEALGVFEIDGILYDLGVSSPQLDE 115 Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS+++ LDMRM+ ++A DVVN DL RI GE+K + +IA I + Sbjct: 116 RERGFSYKQDAKLDMRMNEEASLTAYDVVNTYPYNDLVRIFFKYGEDKFSKQIARKIEQA 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 RQ P +TT +L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A Sbjct: 176 RQVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQEALDL 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297 L G + V++FHSLEDRL K+ F S V IP + P V + +K ++P+Q Sbjct: 236 LAVDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPEDLQPKV-ALVNRKPILPSQ 294 Query: 298 EDVAFNRRSRSAKLRAGMRTV 318 E++ N RS SAKLR + Sbjct: 295 EELEANNRSHSAKLRVAKKIR 315 >gi|194468375|ref|ZP_03074361.1| S-adenosyl-methyltransferase MraW [Lactobacillus reuteri 100-23] gi|194453228|gb|EDX42126.1| S-adenosyl-methyltransferase MraW [Lactobacillus reuteri 100-23] Length = 318 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 118/313 (37%), Positives = 180/313 (57%), Gaps = 13/313 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76 HV VLL++ +A LN P +DAT G GG++++ + ++ + D+D A+ +E Sbjct: 5 KHVTVLLKEAVAGLNVQPTGTYVDATLGGGGHTQAILQQLVDGHLYSFDQDQTAIDYNKE 64 Query: 77 TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++ EQ +L + F ++ + V +G+++DLGVSS Q D RGFS+Q Sbjct: 65 HLKTAIEQQKLTLVEDNFRNIKTELNSYNVKRVNGILYDLGVSSPQFDDAKRGFSYQHDA 124 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ +SA +VVN+ + L +IL GEEK A IA I +RR+ AP +TT + Sbjct: 125 PLDMRMNQEQKLSAMEVVNEWPYERLVKILYRYGEEKFAKSIARKIEQRRKIAPIKTTFE 184 Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I++ + + + + HPA +SFQA+RI VN+E+ L + L A L GG + V++ Sbjct: 185 LVDVIKEGIPAAARRHGGHPAKKSFQAIRIAVNDELGALEESLEQALDLLDVGGRISVIT 244 Query: 250 FHSLEDRLVKKFFASR---SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 F SLEDRLVK F + SG V +IP+ P F+ I KK +V + E++A N R+ Sbjct: 245 FQSLEDRLVKTMFREKTSLSGDVPQGLPVIPAGMEP-DFKLINKKPIVASDEELAANHRA 303 Query: 307 RSAKLRAGMRTVE 319 SAKLR + E Sbjct: 304 HSAKLRIIEKIRE 316 >gi|114763021|ref|ZP_01442451.1| S-adenosyl-methyltransferase MraW [Pelagibaca bermudensis HTCC2601] gi|114544345|gb|EAU47353.1| S-adenosyl-methyltransferase MraW [Roseovarius sp. HTCC2601] Length = 330 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 147/329 (44%), Positives = 204/329 (62%), Gaps = 7/329 (2%) Query: 9 MSSAIHHTIG-DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDR 66 M+ A G HVPVLL ++ + P +D TFGAGGY+R + G++ VI +DR Sbjct: 1 MAPAADQDNGAPHVPVLLRPLLKAVAPVS-GTWVDGTFGAGGYARGLLEAGADKVIGIDR 59 Query: 67 DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126 DP A Q + DY ++ L + F+ + + G DGVV DLGVSSMQ+D +RGFS Sbjct: 60 DPLAHQMAQAWIGDYGDRLELVEGNFADMDKVI--SGADGVVLDLGVSSMQLDIAERGFS 117 Query: 127 FQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 F K GPLDMRM SG SA+D+V + + L +L GEE+ + RIA AIVK R P + Sbjct: 118 FMKDGPLDMRMEQSGESAADLVKRLDETALADVLYTYGEERASRRIARAIVKARDQEPIE 177 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 TT LSS+++ + K + HPATRSFQALRI VN+E L +GL +AE+ALK GG L Sbjct: 178 TTARLSSIVEACLPRPKPGQSHPATRSFQALRIAVNDEYGALWRGLMAAERALKPGGWLC 237 Query: 247 VVSFHSLEDRLVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 VV+FHS+EDR+VK+FF +R+G++ RH + F+ +T+K V P E++A N R Sbjct: 238 VVTFHSVEDRMVKRFFQARTGRLDTVSRHAPVTETEAPRFELLTRKAVGPDDEELAANPR 297 Query: 306 SRSAKLRAGMRTVERSIEDDS-FVHLPRL 333 +RSA+LR G RT E + +++P+L Sbjct: 298 ARSARLRIGKRTDAAPGEIGADKLNMPQL 326 >gi|228477291|ref|ZP_04061929.1| S-adenosyl-methyltransferase MraW [Streptococcus salivarius SK126] gi|228251310|gb|EEK10481.1| S-adenosyl-methyltransferase MraW [Streptococcus salivarius SK126] Length = 316 Score = 377 bits (970), Expect = e-103, Method: Composition-based stats. Identities = 110/321 (34%), Positives = 171/321 (53%), Gaps = 17/321 (5%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M++ H HV VLL + + +L+ P + +DAT G G+S ++ D Sbjct: 1 MTNEFH-----HVTVLLHETVDMLDIKPDGIYVDATLGGAGHSSYLLSQLSEKGHLYCFD 55 Query: 66 RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120 +D A+ Q ++DY ++ + + F L+ + GV DG+++DLGVSS Q+D Sbjct: 56 QDQKAIDNAQVRLKDYIDKGMVTFIKDNFRNLKSNLEALGVSEIDGILYDLGVSSPQLDE 115 Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 DRGFS+++ LDMRM+ ++A DVVN DL RI GE+K + +IA I + Sbjct: 116 RDRGFSYKQDAKLDMRMNEEASLTAYDVVNTYPYNDLVRIFFKYGEDKFSKQIARKIEQA 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 RQ P +TT +L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A Sbjct: 176 RQVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQEALDL 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297 L G + V++FHSLEDRL K+ F S V IP P V + +K ++P+Q Sbjct: 236 LAVDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPEELQPKV-ALVNRKPILPSQ 294 Query: 298 EDVAFNRRSRSAKLRAGMRTV 318 E++ N RS SAKLR + Sbjct: 295 EELEANNRSHSAKLRVAKKIR 315 >gi|327467238|gb|EGF12742.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus sanguinis SK330] Length = 316 Score = 377 bits (970), Expect = e-103, Method: Composition-based stats. Identities = 100/319 (31%), Positives = 170/319 (53%), Gaps = 15/319 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 M++ H H+ VLL + + L P + +DAT G G+S ++ A D Sbjct: 1 MTNEFH-----HITVLLHETVDQLAVKPDGIYVDATLGGAGHSEYLLSQLGDEGHLYAFD 55 Query: 66 RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120 +D A+ ++ + Y E+ + + F L+ + + GV DG+ +DLGVSS Q+D Sbjct: 56 QDQTAIDNAKKRLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQ 115 Query: 121 GDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS+++ PLDMRM+ ++A +VVN + +DL RI GE+K + +IA I + Sbjct: 116 RERGFSYKQDAPLDMRMNREAALTAFEVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQA 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R P +TT +L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A Sbjct: 176 RSVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQRAIDL 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L G + V++FHSLEDRL K+ F S + + + +++K ++P++E Sbjct: 236 LAVDGRIAVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKLELVSRKPILPSKE 295 Query: 299 DVAFNRRSRSAKLRAGMRT 317 ++ N R+ SAKLR + Sbjct: 296 ELESNNRAHSAKLRVARKI 314 >gi|225858187|ref|YP_002739697.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae 70585] gi|298254744|ref|ZP_06978330.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502138|ref|YP_003724078.1| S-adenosyl-methyltransferase [Streptococcus pneumoniae TCH8431/19A] gi|262826820|sp|C1CBB2|RSMH_STRP7 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|225720978|gb|ACO16832.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae 70585] gi|298237733|gb|ADI68864.1| S-adenosyl-methyltransferase [Streptococcus pneumoniae TCH8431/19A] Length = 316 Score = 377 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 106/319 (33%), Positives = 170/319 (53%), Gaps = 15/319 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M+ H HV VLL + I +L+ P + +DAT G G+S ++ A D Sbjct: 1 MTKEFH-----HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFD 55 Query: 66 RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120 +D A+ Q+ + Y E+ + + F LQ + + GV DG+ +DLGVSS Q+D Sbjct: 56 QDQNAIDNAQKRLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQ 115 Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS++K PLDMRM+ ++A +VVN + DL RI GE+K + +IA I + Sbjct: 116 RERGFSYKKDAPLDMRMNQDASLTAYEVVNNYDYHDLVRIFFKYGEDKFSKQIARKIEQA 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R+ P +TT +L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A Sbjct: 176 REVKPIETTTELAEIIKLVKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDM 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L G + V++FHSLEDRL K+ F S + + + +++K ++P+ E Sbjct: 236 LALDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAE 295 Query: 299 DVAFNRRSRSAKLRAGMRT 317 ++ N RS SAKLR + Sbjct: 296 ELEANNRSHSAKLRVARKI 314 >gi|322377105|ref|ZP_08051597.1| S-adenosyl-methyltransferase MraW [Streptococcus sp. M334] gi|321281818|gb|EFX58826.1| S-adenosyl-methyltransferase MraW [Streptococcus sp. M334] Length = 316 Score = 377 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 106/319 (33%), Positives = 170/319 (53%), Gaps = 15/319 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M+ H HV VLL + I +L P + +DAT G G+S ++ A D Sbjct: 1 MTKEFH-----HVTVLLHETIDMLEVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFD 55 Query: 66 RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120 +D A+ Q+ + Y E+ + + F LQ + + GV DG+ +DLGVSS Q+D Sbjct: 56 QDQNAIDNAQQRLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQ 115 Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS++K PLDMRM+ ++A +VVN + DL RI GE+K + +IA I + Sbjct: 116 RERGFSYKKDAPLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQA 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R+ P +TT +L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A + Sbjct: 176 REVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMEM 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L G + V++FHSLEDRL K+ F S + + + +++K ++P+ E Sbjct: 236 LALDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAE 295 Query: 299 DVAFNRRSRSAKLRAGMRT 317 ++ N RS SAKLR + Sbjct: 296 ELEANNRSHSAKLRVARKI 314 >gi|257468236|ref|ZP_05632332.1| methyltransferase [Fusobacterium ulcerans ATCC 49185] gi|317062518|ref|ZP_07927003.1| S-adenosyl-methyltransferase mraW [Fusobacterium ulcerans ATCC 49185] gi|313688194|gb|EFS25029.1| S-adenosyl-methyltransferase mraW [Fusobacterium ulcerans ATCC 49185] Length = 313 Score = 377 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 107/306 (34%), Positives = 168/306 (54%), Gaps = 10/306 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H+PVL + I L + LD T G GG+S K +I++D+D A+ ++ Sbjct: 9 HIPVLYRESIDNLVINKDGIYLDCTLGGGGHSEGILKELSEKGRLISIDQDQQAIDFAKK 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + Y ++ +F+ F L + G +DG++ D+GVSS Q+D +RGFS++ L Sbjct: 69 RLEKYGNKWQVFKNNFENLDTVIYMAGYDKIDGILMDIGVSSTQLDDPERGFSYRYDTKL 128 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ + +SA +VVN+ + + L +IL GEE+ + RIA I + R+ +TT +L Sbjct: 129 DMRMNQNNPLSAYEVVNEYSEEALMKILFEYGEERNSRRIAKFICEAREIKKIETTGELV 188 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++I++ + HPA ++FQA+RI VN E+E L + + A +LK GG L +++FHS Sbjct: 189 AIIKRAYP--ERAAKHPAKKTFQAIRIEVNRELEVLEKAIDKAVDSLKVGGRLGIITFHS 246 Query: 253 LEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDRLVK F + I A + ITKK ++P +V FN R+ S+KL Sbjct: 247 LEDRLVKTKFKDLATACKCPPGLPICVCGGKAKVKLITKKPIIPEGNEVEFNNRAHSSKL 306 Query: 312 RAGMRT 317 R R Sbjct: 307 RVVERI 312 >gi|322516106|ref|ZP_08069041.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus vestibularis ATCC 49124] gi|322125401|gb|EFX96751.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus vestibularis ATCC 49124] Length = 316 Score = 377 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 108/321 (33%), Positives = 172/321 (53%), Gaps = 17/321 (5%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M++ H HV VLL + + +L+ P + +DAT G G+S ++ D Sbjct: 1 MTNEFH-----HVTVLLHETVDMLDIKPDGIYVDATLGGAGHSSYLLSQLSEKGHLYCFD 55 Query: 66 RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120 +D A+ Q ++DY ++ + + F L+ + GV DG+++DLGVSS Q+D Sbjct: 56 QDQKAIDNAQVRLKDYIDKGMVTFIKDNFRNLRSNLEALGVSEIDGILYDLGVSSPQLDE 115 Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS+++ LDMRM+ ++A +VVN DL RI GE+K + +IA I + Sbjct: 116 RERGFSYKQDAKLDMRMNEEASLTAYEVVNTYPYNDLVRIFFKYGEDKFSKQIARKIEQA 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 RQ P +TT +L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A Sbjct: 176 RQVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQEALDL 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297 L G + V++FHSLEDRL K+ F S V IP + P V + +K ++P+Q Sbjct: 236 LAVDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPEDLQPKV-ALVNRKPILPSQ 294 Query: 298 EDVAFNRRSRSAKLRAGMRTV 318 E++ N RS SAKLR + Sbjct: 295 EELEANNRSHSAKLRVAKKIR 315 >gi|322373647|ref|ZP_08048183.1| S-adenosyl-methyltransferase MraW [Streptococcus sp. C150] gi|321278689|gb|EFX55758.1| S-adenosyl-methyltransferase MraW [Streptococcus sp. C150] Length = 316 Score = 377 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 108/321 (33%), Positives = 172/321 (53%), Gaps = 17/321 (5%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M++ H HV VLL + + +L+ P + +DAT G G+S ++ D Sbjct: 1 MTNEFH-----HVTVLLHETVDMLDIKPDGIYVDATLGGAGHSSYLLSQLSEKGHLYCFD 55 Query: 66 RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120 +D A+ Q ++DY ++ + + F L+ + GV DG+++DLGVSS Q+D Sbjct: 56 QDQKAIDNAQGRLKDYIDKGMVTFIKDNFRNLRSNLEALGVSEIDGILYDLGVSSPQLDE 115 Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS+++ LDMRM+ ++A +VVN DL RI GE+K + +IA I + Sbjct: 116 RERGFSYKQDAKLDMRMNEEASLTAYEVVNTYPYNDLVRIFFKYGEDKFSKQIARKIEQA 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 RQ P +TT +L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A Sbjct: 176 RQVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQEALDL 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297 L G + V++FHSLEDRL K+ F S V IP + P V + +K ++P+Q Sbjct: 236 LAVDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPEDLQPKV-ALVNRKPILPSQ 294 Query: 298 EDVAFNRRSRSAKLRAGMRTV 318 E++ N RS SAKLR + Sbjct: 295 EELEANNRSHSAKLRVAKKIR 315 >gi|139437204|ref|ZP_01771364.1| Hypothetical protein COLAER_00343 [Collinsella aerofaciens ATCC 25986] gi|133776851|gb|EBA40671.1| Hypothetical protein COLAER_00343 [Collinsella aerofaciens ATCC 25986] Length = 321 Score = 377 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 113/320 (35%), Positives = 170/320 (53%), Gaps = 12/320 (3%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALD 65 M I H PV+L +V+ L G V+ D T G G+S ++ +D Sbjct: 1 MERGILTQEYRHEPVMLGEVLESLRLKSGSVVCDCTLGGAGHSVKMAAQVGETGLLLGVD 60 Query: 66 RDPFAVSCGQETMRDYKEQF--SLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDC 120 +D A+ + L + F L + + GVDG +FDLGVSS Q+D Sbjct: 61 QDDMALEAAGARLDREVPGVPHQLLKGNFGDLDELLCSAEVPGVDGFLFDLGVSSPQLDI 120 Query: 121 GDRGFSFQKSGPLDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178 RGFS+ + PLDMRM + ++A++V+N N DL RIL + GEEK AS+IA IV+ Sbjct: 121 PGRGFSYNEDAPLDMRMDPGNNTLNAAEVINTYNEHDLARILRVYGEEKFASQIAREIVR 180 Query: 179 RRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 RR+ P +TT +I+ + + + + HPA +SFQA+RI VN+E++ L +GL +A + Sbjct: 181 RREQEPIETTGQFVEIIKAGIPAAARRHGGHPAKKSFQAIRIEVNHELDVLERGLDAATR 240 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPT 296 L GG + V+S+HSLEDR+VK F S + + + + IT+K +V Sbjct: 241 WLNPGGRICVISYHSLEDRIVKNHFKEMSQGCTCPPEIPVCVCGNVPILKVITRKPLVAQ 300 Query: 297 QEDVAFNRRSRSAKLRAGMR 316 ++V N R+RSAK+R R Sbjct: 301 PDEVERNPRARSAKIRVAQR 320 >gi|299821551|ref|ZP_07053439.1| S-adenosyl-methyltransferase [Listeria grayi DSM 20601] gi|299817216|gb|EFI84452.1| S-adenosyl-methyltransferase [Listeria grayi DSM 20601] Length = 313 Score = 377 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 104/308 (33%), Positives = 173/308 (56%), Gaps = 11/308 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H VLL + + +L+ P + +DAT G G+S ++ A D+D A+ + Sbjct: 6 KHDTVLLHETVDMLDIKPDGIYVDATLGGAGHSEYLLSKLNKKGHLYAFDQDQTAIDHAK 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + Y + ++ F +++ + + GV DG+++DLGVSS Q+D +RGFS+ + Sbjct: 66 ERLAPYTGSVTFVKSNFRFMKEALAEHGVTEVDGILYDLGVSSPQLDVRERGFSYHQDAE 125 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM ++A +VVN+ +DL RI GEEK + +IA I +RR +TT +L Sbjct: 126 LDMRMDQEQSLTAKEVVNEWRYEDLVRIFFQYGEEKFSKQIAREIERRRSEKTIETTGEL 185 Query: 192 SSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+ + ++ HP R FQA+RI VN+E++ +++ L A LK G + V++F Sbjct: 186 VDIIKTAIPAPARRKGGHPGKRVFQAIRIAVNDELDAVSESLEKALLLLKTNGRISVITF 245 Query: 251 HSLEDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 HSLEDR+ K+ F ++ R +IP P F+ +T+K ++P++ ++A N R+RS Sbjct: 246 HSLEDRITKQLFKQKTTAQETPRGLPVIPDEYQP-DFELVTRKPILPSEAEMATNNRARS 304 Query: 309 AKLRAGMR 316 AKLR + Sbjct: 305 AKLRVIAK 312 >gi|331002506|ref|ZP_08326024.1| ribosomal RNA small subunit methyltransferase H 2 [Lachnospiraceae oral taxon 107 str. F0167] gi|330410322|gb|EGG89756.1| ribosomal RNA small subunit methyltransferase H 2 [Lachnospiraceae oral taxon 107 str. F0167] Length = 311 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 100/308 (32%), Positives = 169/308 (54%), Gaps = 8/308 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74 +H VLL++VI LN +D T G GG++ K +I +D+D A++ Sbjct: 2 TFNHKSVLLDEVIESLNIKADGYYVDGTLGGGGHALEVVKRLKTGKLIGIDQDMDAINAA 61 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + DY + + + + +++ + + VDG+ DLGVSS Q+D +RGF+++ Sbjct: 62 TQRLIDYSKSVIIIRDNYVNIENILKKENIEKVDGIYIDLGVSSYQLDNAERGFTYRFDA 121 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + + ASD+VN+ + +L I+ GE++ A IA IV+ R +TT + Sbjct: 122 PLDMRMDDRNELKASDIVNEYSESELFHIIRDYGEDRFAKNIAKHIVEYRNKKRIETTFE 181 Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I+ ++ + HPA R+FQA+RI +N E+E L + LK GG L V++ Sbjct: 182 LVDIIKASIPMKIQVTGGHPAKRTFQAIRIELNKELEVLTDSINVMIDLLKPGGRLSVIT 241 Query: 250 FHSLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK+ F + + + + + + IT+K ++P +E++ N R++S Sbjct: 242 FHSLEDRIVKQAFKKAESPCVCPKKFPVCVCGNKSKGRVITRKAILPGEEELEENSRAKS 301 Query: 309 AKLRAGMR 316 AKLR + Sbjct: 302 AKLRVFEK 309 >gi|169832477|ref|YP_001693854.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae Hungary19A-6] gi|262826832|sp|B1I953|RSMH_STRPI RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|168994979|gb|ACA35591.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae Hungary19A-6] Length = 316 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 105/319 (32%), Positives = 170/319 (53%), Gaps = 15/319 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M+ H HV VLL + I +L+ P + +DAT G G+S ++ A D Sbjct: 1 MTKEFH-----HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFD 55 Query: 66 RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120 +D A+ Q+ + Y E+ + + F LQ + + GV DG+ +DLGVSS Q+D Sbjct: 56 QDQNAIDNAQKRLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQ 115 Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS++K PLDMRM+ ++A +VVN + DL RI GE+K + +IA I + Sbjct: 116 RERGFSYKKDAPLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQE 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R+ P +TT +L+ +I+ + + HPA + FQ++RI VN+E+ + ++ A Sbjct: 176 REVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQSIRIEVNDELGAADESIQQAMDM 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L G + V++FHSLEDRL K+ F S + + + +++K ++P+ E Sbjct: 236 LALDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAE 295 Query: 299 DVAFNRRSRSAKLRAGMRT 317 ++ N RS SAKLR + Sbjct: 296 ELEANNRSHSAKLRVARKI 314 >gi|332203501|gb|EGJ17568.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae GA47368] Length = 316 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 107/319 (33%), Positives = 170/319 (53%), Gaps = 15/319 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M+ H HV VLL + I +L+ P + +DAT G G+S ++ A D Sbjct: 1 MTKEFH-----HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFD 55 Query: 66 RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120 +D A+ QE + Y E+ + + F LQ + + GV DG+ +DLGVSS Q+D Sbjct: 56 QDQNAIDNAQERLALYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQ 115 Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS++K PLDMRM+ ++A +VVN + DL RI GE+K + +IA I + Sbjct: 116 RERGFSYKKDAPLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQA 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R+ P +TT +L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A Sbjct: 176 REVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDM 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L G + V++FHSLEDRL K+ F S + + + +++K ++P+ E Sbjct: 236 LALDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAE 295 Query: 299 DVAFNRRSRSAKLRAGMRT 317 ++ N RS SAKLR + Sbjct: 296 ELEANNRSHSAKLRVARKI 314 >gi|225860373|ref|YP_002741882.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae Taiwan19F-14] gi|303255210|ref|ZP_07341284.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae BS455] gi|262825688|sp|C1CPL0|RSMH_STRZT RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|225727237|gb|ACO23088.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae Taiwan19F-14] gi|302597843|gb|EFL64915.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae BS455] Length = 316 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 106/319 (33%), Positives = 169/319 (52%), Gaps = 15/319 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M+ H HV VLL + I +L+ P + +DAT G G+S ++ A D Sbjct: 1 MTKEFH-----HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFD 55 Query: 66 RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120 +D A+ Q+ + Y E+ + + F LQ + + GV DG+ +DLGVSS Q+D Sbjct: 56 QDQNAIDNAQKRLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQ 115 Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS++K PLDMRM+ ++A +VVN + DL RI GE+K + +IA I + Sbjct: 116 RERGFSYKKDAPLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQA 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R+ P +TT +L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A Sbjct: 176 REVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDM 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L G + V++FHSLEDRL K+ F S + + + + +K ++P+ E Sbjct: 236 LALDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVARKPILPSAE 295 Query: 299 DVAFNRRSRSAKLRAGMRT 317 ++ N RS SAKLR + Sbjct: 296 ELEANNRSHSAKLRVARKI 314 >gi|325695197|gb|EGD37098.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus sanguinis SK150] Length = 316 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 102/319 (31%), Positives = 169/319 (52%), Gaps = 15/319 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 M++ H H+ VLL + + L P + +DAT G G+S ++ A D Sbjct: 1 MTNEFH-----HITVLLHETVDQLAVKPDGIYVDATLGGAGHSEYLLSQLGDEGHLYAFD 55 Query: 66 RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120 +D A+ ++ + Y E+ + + F L+ + + GV DG+ +DLGVSS Q+D Sbjct: 56 QDQTAIDNAKKRLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQ 115 Query: 121 GDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS+++ PLDMRM+ ++A DVVN + +DL RI GE+K + +IA I + Sbjct: 116 RERGFSYKQDAPLDMRMNREAALTAFDVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQA 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R +TT +L+ +I+ + + HPA + FQA+RI VNNE+ + ++ A Sbjct: 176 RSIKLIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNNELGAADESIQQAIDL 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L G + V++FHSLEDRL K+ F S + + + +++K ++P+QE Sbjct: 236 LAVDGRIAVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKLELVSRKPILPSQE 295 Query: 299 DVAFNRRSRSAKLRAGMRT 317 ++ N R+ SAKLR + Sbjct: 296 ELESNNRAHSAKLRVARKI 314 >gi|229827494|ref|ZP_04453563.1| hypothetical protein GCWU000182_02883 [Abiotrophia defectiva ATCC 49176] gi|229788432|gb|EEP24546.1| hypothetical protein GCWU000182_02883 [Abiotrophia defectiva ATCC 49176] Length = 322 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 102/322 (31%), Positives = 173/322 (53%), Gaps = 12/322 (3%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65 MS I H+P++LE+VI L+ P + +D T G GG+S K G +I +D Sbjct: 3 MSENIE---FKHIPIMLEEVIEGLDIKPNGIYVDGTLGGGGHSYEIAKRLVSGGRLIGID 59 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGD 122 +D A+ + ++ ++ + ++ ++Q+ + G VDG++ DLGVSS Q+D + Sbjct: 60 QDEAAIKAAGARLSEFGDRVIIVRSNYAQMVSVLQSLGIEQVDGILLDLGVSSHQLDNAE 119 Query: 123 RGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFS+ + LDMRM +A D+VN + +LTRI+ GE++ A++I I+ R+ Sbjct: 120 RGFSYMEDALLDMRMDRRQEKTARDIVNYYSQAELTRIIRDYGEDRFAAKIVAKIIDFRE 179 Query: 182 SAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 + P +TT +L+ +I+ + + HPA R+FQA+RI +N E+ L + + L Sbjct: 180 NKPVETTGELAEIIKSAIPVKYRLTGGHPAKRTFQAIRIELNRELGVLEESIEGMLDILS 239 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQED 299 GG + V++FHSLEDR+VK F I + ++K ++P+ E+ Sbjct: 240 DGGRMAVIAFHSLEDRIVKSAFKKAESPCTCPPDFPICVCGKKSKGFVASRKPLIPSDEE 299 Query: 300 VAFNRRSRSAKLRAGMRTVERS 321 N R++S+KLR +R E + Sbjct: 300 TERNPRAKSSKLRIFVRKREEN 321 >gi|306824545|ref|ZP_07457891.1| S-adenosyl-methyltransferase MraW [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304433332|gb|EFM36302.1| S-adenosyl-methyltransferase MraW [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 316 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 106/319 (33%), Positives = 170/319 (53%), Gaps = 15/319 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M+ H HV VLL + I +L+ P + +DAT G G+S ++ A D Sbjct: 1 MTKEFH-----HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFD 55 Query: 66 RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120 +D A+ Q+ + Y E+ + + F LQ + + GV DG+ +DLGVSS Q+D Sbjct: 56 QDQNAIDNAQKRLAPYIEKGMVTFIKDNFRHLQARLQEAGVQEIDGICYDLGVSSPQLDQ 115 Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS++K PLDMRM+ ++A +VVN + DL RI GE+K + +IA I + Sbjct: 116 RERGFSYKKDAPLDMRMNQEASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQA 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R+ P +TT +L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A Sbjct: 176 REVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDM 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L G + V++FHSLEDRL K+ F S + + + +++K ++P+ E Sbjct: 236 LALDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAE 295 Query: 299 DVAFNRRSRSAKLRAGMRT 317 ++ N RS SAKLR + Sbjct: 296 ELVANNRSHSAKLRVARKI 314 >gi|148988090|ref|ZP_01819553.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae SP6-BS73] gi|168494684|ref|ZP_02718827.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae CDC3059-06] gi|147926554|gb|EDK77627.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae SP6-BS73] gi|183575411|gb|EDT95939.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae CDC3059-06] Length = 316 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 106/319 (33%), Positives = 171/319 (53%), Gaps = 15/319 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M+ H HV VLL + I +L+ P + +DAT G G+S ++ A D Sbjct: 1 MTKEFH-----HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFD 55 Query: 66 RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120 +D A+ Q+ + Y E+ + + F LQ + + GV DG+ +DLGVSS Q+D Sbjct: 56 QDQNAIDNAQKRLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQ 115 Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS++K PLDMRM+ ++A +VVN + DL RI GE+K + +IA I + Sbjct: 116 RERGFSYKKDAPLDMRMNQDASLTAYEVVNNYDYHDLVRIFFKYGEDKFSKQIARKIEQA 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R+ P +TT +L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A + Sbjct: 176 REVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMEM 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L G + V++FHSLEDRL K+ F S + + + +++K ++P+ E Sbjct: 236 LALDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLRPKMELVSRKPILPSAE 295 Query: 299 DVAFNRRSRSAKLRAGMRT 317 ++ N RS SAKLR + Sbjct: 296 ELEANNRSHSAKLRVARKI 314 >gi|15924169|ref|NP_371703.1| S-adenosyl-methyltransferase mraW [Staphylococcus aureus subsp. aureus Mu50] gi|15926762|ref|NP_374295.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus N315] gi|21282791|ref|NP_645879.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus MW2] gi|49483342|ref|YP_040566.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus MRSA252] gi|49486019|ref|YP_043240.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus MSSA476] gi|148267671|ref|YP_001246614.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus JH9] gi|150393729|ref|YP_001316404.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus JH1] gi|156979500|ref|YP_001441759.1| hypothetical protein SAHV_1169 [Staphylococcus aureus subsp. aureus Mu3] gi|161509356|ref|YP_001575015.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221140649|ref|ZP_03565142.1| S-adenosyl-methyltransferase [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253314966|ref|ZP_04838179.1| S-adenosyl-methyltransferase [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253733582|ref|ZP_04867747.1| S-adenosyl-methyltransferase [Staphylococcus aureus subsp. aureus TCH130] gi|255005966|ref|ZP_05144567.2| S-adenosyl-methyltransferase [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257425233|ref|ZP_05601658.1| methylase MraW [Staphylococcus aureus subsp. aureus 55/2053] gi|257427893|ref|ZP_05604291.1| methylase MraW [Staphylococcus aureus subsp. aureus 65-1322] gi|257430526|ref|ZP_05606908.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Staphylococcus aureus subsp. aureus 68-397] gi|257433287|ref|ZP_05609645.1| S-adenosyl-methyltransferase mraW [Staphylococcus aureus subsp. aureus E1410] gi|257436129|ref|ZP_05612176.1| methylase MraW [Staphylococcus aureus subsp. aureus M876] gi|257795765|ref|ZP_05644744.1| methylase MraW [Staphylococcus aureus A9781] gi|258415989|ref|ZP_05682259.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus A9763] gi|258419736|ref|ZP_05682703.1| methylase MraW [Staphylococcus aureus A9719] gi|258444516|ref|ZP_05692845.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus A8115] gi|258447651|ref|ZP_05695795.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Staphylococcus aureus A6300] gi|258449493|ref|ZP_05697596.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus A6224] gi|258451877|ref|ZP_05699898.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus A5948] gi|258454872|ref|ZP_05702836.1| S-adenosyl-methyltransferase mraW [Staphylococcus aureus A5937] gi|262048753|ref|ZP_06021635.1| hypothetical protein SAD30_1583 [Staphylococcus aureus D30] gi|262051681|ref|ZP_06023900.1| hypothetical protein SA930_1508 [Staphylococcus aureus 930918-3] gi|269202794|ref|YP_003282063.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus ED98] gi|282892665|ref|ZP_06300900.1| methylase MraW [Staphylococcus aureus A8117] gi|282903731|ref|ZP_06311619.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus C160] gi|282905495|ref|ZP_06313350.1| methylase MraW [Staphylococcus aureus subsp. aureus Btn1260] gi|282908470|ref|ZP_06316300.1| MraW methylase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910752|ref|ZP_06318555.1| MraW methylase [Staphylococcus aureus subsp. aureus WBG10049] gi|282913955|ref|ZP_06321742.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus M899] gi|282916429|ref|ZP_06324191.1| methylase MraW [Staphylococcus aureus subsp. aureus D139] gi|282918877|ref|ZP_06326612.1| methylase MraW [Staphylococcus aureus subsp. aureus C427] gi|282919960|ref|ZP_06327689.1| methylase MraW [Staphylococcus aureus A9765] gi|282924000|ref|ZP_06331676.1| methylase MraW [Staphylococcus aureus subsp. aureus C101] gi|282929224|ref|ZP_06336799.1| methylase MraW [Staphylococcus aureus A10102] gi|283770241|ref|ZP_06343133.1| S-adenosyl-methyltransferase [Staphylococcus aureus subsp. aureus H19] gi|283957922|ref|ZP_06375373.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus A017934/97] gi|284024103|ref|ZP_06378501.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus 132] gi|293500988|ref|ZP_06666839.1| methylase MraW [Staphylococcus aureus subsp. aureus 58-424] gi|293509946|ref|ZP_06668655.1| methylase MraW [Staphylococcus aureus subsp. aureus M809] gi|293526535|ref|ZP_06671220.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus M1015] gi|294848172|ref|ZP_06788919.1| methylase MraW [Staphylococcus aureus A9754] gi|295407117|ref|ZP_06816918.1| methylase MraW [Staphylococcus aureus A8819] gi|295427665|ref|ZP_06820297.1| methylase MraW [Staphylococcus aureus subsp. aureus EMRSA16] gi|296276145|ref|ZP_06858652.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus MR1] gi|297208179|ref|ZP_06924609.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297245997|ref|ZP_06929856.1| methylase MraW [Staphylococcus aureus A8796] gi|297591377|ref|ZP_06950015.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus MN8] gi|300912257|ref|ZP_07129700.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus TCH70] gi|304381261|ref|ZP_07363914.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|42560201|sp|P60392|RSMH_STAAN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|42560202|sp|P60393|RSMH_STAA8 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|42560203|sp|P60394|RSMH_STAAW RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|48474288|sp|P60485|RSMH_STAAM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|54036187|sp|Q6GA33|RSMH_STAAS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|54036188|sp|Q6GHQ6|RSMH_STAAR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262826623|sp|A7X1B8|RSMH_STAA1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262826627|sp|A6U0Z9|RSMH_STAA2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262826631|sp|A5IS65|RSMH_STAA9 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262826654|sp|A8Z3M0|RSMH_STAAT RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262831474|sp|Q2FHQ8|RSMH_STAA3 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|2149891|gb|AAC45622.1| unknown [Staphylococcus aureus] gi|13700978|dbj|BAB42274.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus N315] gi|14246949|dbj|BAB57341.1| S-adenosyl-methyltransferase mraW [Staphylococcus aureus subsp. aureus Mu50] gi|21204229|dbj|BAB94927.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MW2] gi|49241471|emb|CAG40157.1| MraW methylase family protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49244462|emb|CAG42890.1| MraW methylase family protein [Staphylococcus aureus subsp. aureus MSSA476] gi|147740740|gb|ABQ49038.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus JH9] gi|149946181|gb|ABR52117.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus JH1] gi|156721635|dbj|BAF78052.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|160368165|gb|ABX29136.1| S-adenosyl-methyltransferase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253728452|gb|EES97181.1| S-adenosyl-methyltransferase [Staphylococcus aureus subsp. aureus TCH130] gi|257271690|gb|EEV03828.1| methylase MraW [Staphylococcus aureus subsp. aureus 55/2053] gi|257274734|gb|EEV06221.1| methylase MraW [Staphylococcus aureus subsp. aureus 65-1322] gi|257278654|gb|EEV09273.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Staphylococcus aureus subsp. aureus 68-397] gi|257281380|gb|EEV11517.1| S-adenosyl-methyltransferase mraW [Staphylococcus aureus subsp. aureus E1410] gi|257284411|gb|EEV14531.1| methylase MraW [Staphylococcus aureus subsp. aureus M876] gi|257789737|gb|EEV28077.1| methylase MraW [Staphylococcus aureus A9781] gi|257839325|gb|EEV63799.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus A9763] gi|257844321|gb|EEV68703.1| methylase MraW [Staphylococcus aureus A9719] gi|257850009|gb|EEV73962.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus A8115] gi|257853842|gb|EEV76801.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Staphylococcus aureus A6300] gi|257857481|gb|EEV80379.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus A6224] gi|257860485|gb|EEV83312.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus A5948] gi|257863255|gb|EEV86019.1| S-adenosyl-methyltransferase mraW [Staphylococcus aureus A5937] gi|259160416|gb|EEW45441.1| hypothetical protein SA930_1508 [Staphylococcus aureus 930918-3] gi|259163209|gb|EEW47769.1| hypothetical protein SAD30_1583 [Staphylococcus aureus D30] gi|262075084|gb|ACY11057.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus ED98] gi|269940673|emb|CBI49052.1| MraW methylase family protein [Staphylococcus aureus subsp. aureus TW20] gi|282313972|gb|EFB44364.1| methylase MraW [Staphylococcus aureus subsp. aureus C101] gi|282316687|gb|EFB47061.1| methylase MraW [Staphylococcus aureus subsp. aureus C427] gi|282319869|gb|EFB50217.1| methylase MraW [Staphylococcus aureus subsp. aureus D139] gi|282322023|gb|EFB52347.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus M899] gi|282325357|gb|EFB55666.1| MraW methylase [Staphylococcus aureus subsp. aureus WBG10049] gi|282327532|gb|EFB57815.1| MraW methylase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330787|gb|EFB60301.1| methylase MraW [Staphylococcus aureus subsp. aureus Btn1260] gi|282589183|gb|EFB94280.1| methylase MraW [Staphylococcus aureus A10102] gi|282594676|gb|EFB99660.1| methylase MraW [Staphylococcus aureus A9765] gi|282595349|gb|EFC00313.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus C160] gi|282764662|gb|EFC04787.1| methylase MraW [Staphylococcus aureus A8117] gi|283460388|gb|EFC07478.1| S-adenosyl-methyltransferase [Staphylococcus aureus subsp. aureus H19] gi|283470389|emb|CAQ49600.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus ST398] gi|283790071|gb|EFC28888.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus A017934/97] gi|285816861|gb|ADC37348.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus 04-02981] gi|290920607|gb|EFD97670.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus M1015] gi|291095993|gb|EFE26254.1| methylase MraW [Staphylococcus aureus subsp. aureus 58-424] gi|291467396|gb|EFF09913.1| methylase MraW [Staphylococcus aureus subsp. aureus M809] gi|294824972|gb|EFG41394.1| methylase MraW [Staphylococcus aureus A9754] gi|294967970|gb|EFG43998.1| methylase MraW [Staphylococcus aureus A8819] gi|295128023|gb|EFG57657.1| methylase MraW [Staphylococcus aureus subsp. aureus EMRSA16] gi|296886918|gb|EFH25821.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297177161|gb|EFH36415.1| methylase MraW [Staphylococcus aureus A8796] gi|297576263|gb|EFH94979.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus MN8] gi|300886503|gb|EFK81705.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus TCH70] gi|304340244|gb|EFM06185.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312438444|gb|ADQ77515.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus TCH60] gi|312829573|emb|CBX34415.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315130970|gb|EFT86954.1| S-adenosyl-methyltransferase [Staphylococcus aureus subsp. aureus CGS03] gi|315196909|gb|EFU27252.1| S-adenosyl-methyltransferase [Staphylococcus aureus subsp. aureus CGS01] gi|329313847|gb|AEB88260.1| Ribosomal RNA small subunit methyltransferase H [Staphylococcus aureus subsp. aureus T0131] gi|329725033|gb|EGG61529.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus 21189] gi|329727402|gb|EGG63858.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus 21172] Length = 311 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 100/308 (32%), Positives = 161/308 (52%), Gaps = 9/308 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H+ V+L + I LN V +D T G G++ +IA+D+D A+ Sbjct: 1 MFHHISVMLNETIDYLNVKENGVYIDCTLGGAGHALYLLNQLNDDGRLIAIDQDQTAIDN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E ++D+ + + + F +L + D + VDG+ +DLGVSS Q+D +RGFS+ Sbjct: 61 AKEVLKDHLHKVTFVHSNFRELTQILKDLNIEKVDGIYYDLGVSSPQLDIPERGFSYHHD 120 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM + ++A ++VN + + L +I GEEK + +IA I R+ P TT Sbjct: 121 ATLDMRMDQTQELTAYEIVNNWSYEALVKIFYRYGEEKFSKQIARRIEAHREQQPITTTL 180 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I++ + + HPA R FQALRI VN+E+ + A + +K G + V+ Sbjct: 181 ELVDIIKEGIPAKARRKGGHPAKRVFQALRIAVNDELSAFEDSIEQAIELVKVDGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F R + A+ + + +K + T+ED+ N R+R Sbjct: 241 TFHSLEDRLCKQVFQEYEKGPEVPRGLPVIPEAYTPKLKRVNRKPITATEEDLDDNNRAR 300 Query: 308 SAKLRAGM 315 SAKLR Sbjct: 301 SAKLRVAE 308 >gi|163738706|ref|ZP_02146120.1| methyltransferase [Phaeobacter gallaeciensis BS107] gi|163741583|ref|ZP_02148974.1| S-adenosyl-methyltransferase MraW [Phaeobacter gallaeciensis 2.10] gi|161385317|gb|EDQ09695.1| S-adenosyl-methyltransferase MraW [Phaeobacter gallaeciensis 2.10] gi|161388034|gb|EDQ12389.1| S-adenosyl-L-methionine-dependent methyltransferase [Phaeobacter gallaeciensis BS107] Length = 335 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 157/328 (47%), Positives = 209/328 (63%), Gaps = 6/328 (1%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRD 67 M++ + G HVPVLL ++ + P G+ LD TFGAGGYSR + G+ +VI +DRD Sbjct: 1 MTTDRPTSTGPHVPVLLRPLLKAVAPVSGR-WLDGTFGAGGYSRGLLEAGADHVIGVDRD 59 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 P A + + DY + +L Q FS++ +Y D +DGVV DLGVSSMQ+D +RGFSF Sbjct: 60 PLAFEMAESWIGDYAGRLTLQQGVFSRMDEYAQD--LDGVVLDLGVSSMQLDLAERGFSF 117 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRMS G SA+D+V + + L IL + GEE+ + RIA AIVK R AP T Sbjct: 118 MRDGPLDMRMSQDGPSAADLVAELDEAALADILFLFGEERASRRIARAIVKARTEAPITT 177 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T L+ +I+ + SK + HPATRSFQ LRI VN E EEL +GL +AE+ALK GGLL V Sbjct: 178 TLQLAGIIEHCLPRSKPGQSHPATRSFQGLRIAVNAEYEELFEGLLAAERALKPGGLLAV 237 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPS-NAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+FHS+EDR+VK+FF R+GK P P+ F +T+K V P E++A N RS Sbjct: 238 VTFHSIEDRMVKRFFQHRAGKTGRANRYAPEVEETPSQFALVTRKAVGPDDEELAENPRS 297 Query: 307 RSAKLRAGMRTVERSIEDDSF-VHLPRL 333 RSA+LR G RT IE + + +P+L Sbjct: 298 RSARLRVGRRTEATPIEISAKDIGMPQL 325 >gi|148983740|ref|ZP_01817059.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae SP3-BS71] gi|149013058|ref|ZP_01833924.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae SP19-BS75] gi|168484209|ref|ZP_02709161.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae CDC1873-00] gi|194398555|ref|YP_002037018.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae G54] gi|225856075|ref|YP_002737586.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae P1031] gi|262825679|sp|C1CIJ8|RSMH_STRZP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262826787|sp|B5E6Z2|RSMH_STRP4 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|4009486|gb|AAC95454.1| YllC [Streptococcus pneumoniae G54] gi|147763093|gb|EDK70035.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae SP19-BS75] gi|147923887|gb|EDK74999.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae SP3-BS71] gi|172042545|gb|EDT50591.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae CDC1873-00] gi|194358222|gb|ACF56670.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae G54] gi|225724871|gb|ACO20723.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae P1031] gi|301799463|emb|CBW32003.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae OXC141] gi|332077620|gb|EGI88081.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae GA41301] gi|332202242|gb|EGJ16311.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae GA41317] Length = 316 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 106/319 (33%), Positives = 170/319 (53%), Gaps = 15/319 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M+ H HV VLL + I +L+ P + +DAT G G+S ++ A D Sbjct: 1 MTKEFH-----HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFD 55 Query: 66 RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120 +D A+ Q+ + Y E+ + + F LQ + + GV DG+ +DLGVSS Q+D Sbjct: 56 QDQNAIDNAQKRLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQ 115 Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS++K PLDMRM+ ++A +VVN + DL RI GE+K + +IA I + Sbjct: 116 RERGFSYKKDAPLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQA 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R+ P +TT +L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A Sbjct: 176 REVKPIETTTELAEIIKLVKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDM 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L G + V++FHSLEDRL K+ F S + + + +++K ++P+ E Sbjct: 236 LALDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAE 295 Query: 299 DVAFNRRSRSAKLRAGMRT 317 ++ N RS SAKLR + Sbjct: 296 ELEANNRSHSAKLRVARKI 314 >gi|56696072|ref|YP_166426.1| S-adenosyl-methyltransferase MraW [Ruegeria pomeroyi DSS-3] gi|68565435|sp|Q5LU79|RSMH_SILPO RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|56677809|gb|AAV94475.1| S-adenosyl-methyltransferase MraW [Ruegeria pomeroyi DSS-3] Length = 331 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 150/329 (45%), Positives = 206/329 (62%), Gaps = 7/329 (2%) Query: 9 MS-SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDR 66 MS +A + H+PVLL ++A + P + LD TFGAGGY+R G+ VIA+DR Sbjct: 1 MSRTAAPPSDDPHIPVLLRPLLAAVAPVS-GIWLDGTFGAGGYTRGLLAAGADRVIAVDR 59 Query: 67 DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126 DP A +DY ++ + Q FS++ +Y D +DGVV DLGVSSMQ+D +RGFS Sbjct: 60 DPLAFELAAGWAKDYGDRLVMQQGVFSRMDEYASD--LDGVVLDLGVSSMQLDLAERGFS 117 Query: 127 FQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 F K GPLDMRMS G SA+D+VN A DL IL GEE+ + RIA AIVK R AP + Sbjct: 118 FMKDGPLDMRMSQEGPSAADLVNTATEADLADILFHYGEERASRRIARAIVKARAEAPIE 177 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 TT L++L++ + K + HPATRSFQALRI VN E +EL +GL +AE+ALK GG L Sbjct: 178 TTLQLAALVESCLPRPKPGQSHPATRSFQALRIAVNAEYDELFEGLMAAERALKPGGKLA 237 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSN-AHPAVFQSITKKVVVPTQEDVAFNRR 305 VV+FHS+EDR+VK+F +R+G+ P F+ +++K + P +++A N R Sbjct: 238 VVTFHSIEDRMVKRFLQARAGRSGRANRYAPETVEDAPQFELLSRKAIGPDDQELAENPR 297 Query: 306 SRSAKLRAGMRTVERSIE-DDSFVHLPRL 333 +RSAKLR +RT + D + +P+L Sbjct: 298 ARSAKLRVALRTDAPAGAVDAKSIGMPQL 326 >gi|125973496|ref|YP_001037406.1| S-adenosyl-methyltransferase MraW [Clostridium thermocellum ATCC 27405] gi|263446119|sp|A3DE34|RSMH_CLOTH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|125713721|gb|ABN52213.1| S-adenosyl-methyltransferase MraW [Clostridium thermocellum ATCC 27405] Length = 313 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 112/309 (36%), Positives = 169/309 (54%), Gaps = 11/309 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H PVLLE+ I+ L P V +D T G G+S K +I LD+D FA+ QE Sbjct: 5 HKPVLLEETISNLAIKPDGVYIDGTVGGAGHSGEILKRLDESGTLIGLDQDEFAIKTSQE 64 Query: 77 TMR--DYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + K + L F +++ VDG++ DLGVSS Q+D RGFS+ K Sbjct: 65 KLVQINSKAKIILVNTNFVNIKEVCQKNNIESVDGILLDLGVSSHQLDEASRGFSYNKDA 124 Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM G ++A +VN+ +++ RI+ GEEK ASRIA IV+ R+ +TT + Sbjct: 125 PLDMRMDRRGELTAKKIVNEYGREEIKRIIRDYGEEKWASRIAEFIVEARKKKEIETTGE 184 Query: 191 LSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I+ + ++ HPA R+FQALRI VNNE+ LA+ + + LK GG +++ Sbjct: 185 LVDIIKAAIPSSARRGGPHPAKRTFQALRIAVNNELGILAKTIEDGTELLKPGGRFCIIT 244 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK F + + + + + + +K +VP ++++ N R+RS Sbjct: 245 FHSLEDRIVKDEFNKKVNPCICPKQFPVCTCGRKPEGVLVNRKPIVPKEKELEENPRARS 304 Query: 309 AKLRAGMRT 317 AKLR + Sbjct: 305 AKLRVLEKI 313 >gi|253583641|ref|ZP_04860839.1| S-adenosyl-methyltransferase mraW [Fusobacterium varium ATCC 27725] gi|251834213|gb|EES62776.1| S-adenosyl-methyltransferase mraW [Fusobacterium varium ATCC 27725] Length = 313 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 107/306 (34%), Positives = 168/306 (54%), Gaps = 10/306 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H+PVL + I L + LD T G GG+S K +I++D+D A+ ++ Sbjct: 9 HIPVLYRESIDNLVINKDGIYLDCTLGGGGHSEGILKELSEKGRLISIDQDQQAIDFAKK 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + Y ++ +F+ F L + G +DG++ D+GVSS Q+D +RGFS++ L Sbjct: 69 RLEKYGNKWQVFKNNFENLDTVIYMAGYDKIDGILMDIGVSSTQLDDPERGFSYRYDTKL 128 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ + +SA +VVN+ + + L +IL GEE+ + RIA I + R+ +TT +L Sbjct: 129 DMRMNQNNSLSAYEVVNEYSEEALMKILFEYGEERNSRRIAKFICEAREIKKIETTGELV 188 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++I++ + HPA ++FQA+RI VN E+E L + + A +LK GG L +++FHS Sbjct: 189 AIIKRAYP--ERAAKHPAKKTFQAIRIEVNRELEVLEKAIDKAVDSLKIGGRLGIITFHS 246 Query: 253 LEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDRLVK F + I A + ITKK ++P +V FN R+ S+KL Sbjct: 247 LEDRLVKTKFKDLATACKCPPGLPICVCGGKAKVKLITKKPIIPEGNEVEFNNRAHSSKL 306 Query: 312 RAGMRT 317 R R Sbjct: 307 RVVERI 312 >gi|116513827|ref|YP_812733.1| S-adenosyl-methyltransferase MraW [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116093142|gb|ABJ58295.1| SAM-dependent methyltransferase for cell envelope biogenesis [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 305 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 102/304 (33%), Positives = 164/304 (53%), Gaps = 12/304 (3%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMRDY- 81 + + I L P G +DATFG GG++R + N+I D+D +A+ Q + Sbjct: 1 MHETIDNLAPQSGGTYVDATFGGGGHARYLLRKLDKGNLIGFDQDQYAIDTAQSNFAAFL 60 Query: 82 ----KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + + L FS L++ + G+DG+ +DLGVSS Q+D +RGFS++ LD Sbjct: 61 KEDSQPRLQLVHNNFSHLKEELAKLGISGIDGIYYDLGVSSPQLDQAERGFSYRFDARLD 120 Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM S A +VNQ + K L +L G+EK + +IA IV+RR+ P +TT +L Sbjct: 121 MRMDQSQDFDAYQLVNQYDQKQLADVLYRYGDEKFSRQIARKIVERRRGKPIETTFELVE 180 Query: 194 LIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I++ + + + HPA +SFQA+R+ VN+E++ L L A L GG + V++F S Sbjct: 181 IIKEAIPAAARRRGGHPAKKSFQAIRVEVNHELDVLRASLEEAISLLNPGGRISVITFQS 240 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LED++VK+ F S + + + + +K + ++E++A N RS SAKLR Sbjct: 241 LEDKIVKQTFKKYSEVEIPRGMPVVPEGIKPTLRLVNRKSITASEEELAENNRSHSAKLR 300 Query: 313 AGMR 316 + Sbjct: 301 VAEK 304 >gi|289551038|ref|YP_003471942.1| S-adenosyl-methyltransferase MraW [Staphylococcus lugdunensis HKU09-01] gi|315658534|ref|ZP_07911406.1| S-adenosyl-methyltransferase MraW [Staphylococcus lugdunensis M23590] gi|289180570|gb|ADC87815.1| S-adenosyl-methyltransferase MraW [Staphylococcus lugdunensis HKU09-01] gi|315496863|gb|EFU85186.1| S-adenosyl-methyltransferase MraW [Staphylococcus lugdunensis M23590] Length = 311 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 103/309 (33%), Positives = 162/309 (52%), Gaps = 11/309 (3%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + HV V+L + I LN P V +D T G G++ ++IA+D+D A+ Sbjct: 1 MFHHVSVMLNETIDYLNIKPDGVYVDCTLGGAGHALYLLNQLNDEGHLIAIDQDTTAIDN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E ++ + + + F +L + + + VDG+ +DLGVSS Q+D +RGFS+ Sbjct: 61 AKEVLKAHLHKVTFVHNNFRELTHILKELNIEKVDGIYYDLGVSSPQLDVPERGFSYHHD 120 Query: 131 GPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM +SA +VVN+ + + L +I GEEK + +IA I R+ P +TT Sbjct: 121 AKLDMRMDRTQTLSAYEVVNEWSYEALVKIFYRYGEEKFSKQIARRIEAHRELQPIETTL 180 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L +I++ + + HPA R FQA+RI VN+E+ + A + +K G + V+ Sbjct: 181 QLVDVIKEGIPAKARRKGGHPAKRVFQAIRIAVNDELSAFEDSIEQAIELVKVNGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 +FHSLEDRL K+ F R +IP P + + +K + T+ED+ N R+ Sbjct: 241 TFHSLEDRLCKQIFQEYEKGPEVPRGLPIIPEEYTPK-LKRVNRKPITATEEDLNQNNRA 299 Query: 307 RSAKLRAGM 315 RSAKLR Sbjct: 300 RSAKLRVAE 308 >gi|298369646|ref|ZP_06980963.1| S-adenosyl-methyltransferase MraW [Neisseria sp. oral taxon 014 str. F0314] gi|298282203|gb|EFI23691.1| S-adenosyl-methyltransferase MraW [Neisseria sp. oral taxon 014 str. F0314] Length = 323 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 124/318 (38%), Positives = 178/318 (55%), Gaps = 13/318 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 MS A + H+ VLL + + LN P V +D TFG GG+SR +I D Sbjct: 1 MSEAGEY---KHITVLLNEAVDALNIRPDGVYVDGTFGRGGHSRLILSRLGEEGRLIVFD 57 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGD 122 +DP A+ ++ + Y + S+ FS Q + + G VDG +FDLGVSS QID G Sbjct: 58 KDPQAIVAARK-LAAYDMRVSVVHDGFSVFQTALDELGIGKVDGALFDLGVSSPQIDEGG 116 Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF+ PLDMRM + G+SA++ + A+ +DL ++ GEE+ + +IA AIV +R+ Sbjct: 117 RGFSFRFDAPLDMRMDPTRGMSAAEWIATASEQDLNEVIKNYGEERFSRQIARAIVAQRE 176 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 +P TT+ L+ L+ + V + + PATR+FQA+RIF+N E+EE+ L A LK Sbjct: 177 ESPIDTTRKLAQLVAQNVRTRERGQ-DPATRTFQAVRIFINRELEEIEAVLPQATGRLKE 235 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDV 300 GG L V++FHSLEDR+VK+F +S R + + P K V P+ ++ Sbjct: 236 GGRLAVIAFHSLEDRIVKQFIKKQSQHAPLPRWVAVKEADLPQPPLRPVGKAVRPSDAEI 295 Query: 301 AFNRRSRSAKLRAGMRTV 318 N RSRSA LR RT Sbjct: 296 QANPRSRSAVLRVAERTA 313 >gi|149018026|ref|ZP_01834485.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae SP23-BS72] gi|147931590|gb|EDK82568.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae SP23-BS72] Length = 316 Score = 376 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 106/319 (33%), Positives = 170/319 (53%), Gaps = 15/319 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M+ H HV VLL + I +L+ P + +DAT G G+S ++ A D Sbjct: 1 MTKKFH-----HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFD 55 Query: 66 RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120 +D A+ Q+ + Y E+ + + F LQ + + GV DG+ +DLGVSS Q+D Sbjct: 56 QDQNAIDNAQKRLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQ 115 Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS++K PLDMRM+ ++A +VVN + DL RI GE+K + +IA I + Sbjct: 116 RERGFSYKKDAPLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQA 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R+ P +TT +L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A Sbjct: 176 REVKPIETTTELAEIIKLVKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDM 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L G + V++FHSLEDRL K+ F S + + + +++K ++P+ E Sbjct: 236 LALDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAE 295 Query: 299 DVAFNRRSRSAKLRAGMRT 317 ++ N RS SAKLR + Sbjct: 296 ELEANNRSHSAKLRVARKI 314 >gi|83858922|ref|ZP_00952444.1| hypothetical protein OA2633_05446 [Oceanicaulis alexandrii HTCC2633] gi|83853745|gb|EAP91597.1| hypothetical protein OA2633_05446 [Oceanicaulis alexandrii HTCC2633] Length = 334 Score = 376 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 144/331 (43%), Positives = 196/331 (59%), Gaps = 9/331 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSNVIALDRDPFAVSCG 74 + H+PV+L++V+ L P G + +D TFGAGGY+R V+ +DRDP A Sbjct: 2 SDQPHIPVMLDEVLTHLQPRDGGLYVDGTFGAGGYTRGILGAADCRVLGIDRDPSARETA 61 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + YK +F+ FS ++D + GVDGVV DLGVSSMQ+D +RGFSFQK G Sbjct: 62 ERMKPAYKGRFAFGFGPFSMMEDIIEAAGSSGVDGVVLDLGVSSMQLDQAERGFSFQKDG 121 Query: 132 PLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 PLDMRMS SG +A+D VN +L I + GEE+ A R A+AIV+ R+ P T L Sbjct: 122 PLDMRMSQSGPTAADAVNHLEAHELAAIFKVYGEERHARRAANAIVRAREVEPITRTLVL 181 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +I + V K RIHPATRSFQ LRI+VN+E+ EL +GL++AE+ L+ G L+VV+FH Sbjct: 182 ADIIGRAV-GGKPGRIHPATRSFQGLRIYVNDELGELVRGLQAAERVLRPAGRLVVVTFH 240 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK F R+G P F ++KK + T+ + A N RSRSA Sbjct: 241 SLEDRIVKTFLRERAGLTGGGSRHQPEIQAERDPSFALVSKKALSATEAEAAENPRSRSA 300 Query: 310 KLRAGMRTVERSI--EDDSFVHLPRLPTLSQ 338 KLRA +R + ED+ F +P L + Sbjct: 301 KLRAAIRNEHEAWPREDEGFAGVPSYRRLEE 331 >gi|222053873|ref|YP_002536235.1| S-adenosyl-methyltransferase MraW [Geobacter sp. FRC-32] gi|263455960|sp|B9M164|RSMH_GEOSF RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|221563162|gb|ACM19134.1| S-adenosyl-methyltransferase MraW [Geobacter sp. FRC-32] Length = 312 Score = 376 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 119/308 (38%), Positives = 178/308 (57%), Gaps = 9/308 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 HV VL +VIA L P PG + +D T G G++R + + +I D+D A++ Sbjct: 5 KHVSVLPAEVIAYLAPRPGGIYVDGTLGGAGHARLILEASAPDGLLIGFDQDGQALASAG 64 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + + ++ L + F+ L++ + + G+ DG + D+GVSS Q+D +RGFSFQ P Sbjct: 65 ERLAPFGKRVVLVKRNFAFLEEALAEIGIEAIDGFLLDVGVSSHQLDTVERGFSFQHDAP 124 Query: 133 LDMRMSCSGIS-ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S + A+++VN + +DL R++ GEE+ A RIA I+KRR+ P TT L Sbjct: 125 LDMRMDLSAETTAAELVNTLSEEDLCRVIREYGEERWAKRIAAFIIKRREETPIATTLQL 184 Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+ V + R+HPATR+FQALRI VN+E+ L +GL + LK GG +V+SF Sbjct: 185 VDVIKAAVPKGAWEVRLHPATRTFQALRIAVNDELASLEKGLSGGVRLLKKGGRGVVISF 244 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+ K F S + R + + + +T K VV + +V+ N RSRSA Sbjct: 245 HSLEDRIAKTTFRSLAQGCKCPREIPRCVCGNLPQVKVLTGKPVVANEVEVSSNPRSRSA 304 Query: 310 KLRAGMRT 317 +LRA + Sbjct: 305 RLRAVEKI 312 >gi|148996748|ref|ZP_01824466.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae SP11-BS70] gi|168576735|ref|ZP_02722593.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae MLV-016] gi|307066994|ref|YP_003875960.1| putative S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Streptococcus pneumoniae AP200] gi|147757323|gb|EDK64362.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae SP11-BS70] gi|183577531|gb|EDT98059.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae MLV-016] gi|306408531|gb|ADM83958.1| Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Streptococcus pneumoniae AP200] Length = 316 Score = 376 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 106/319 (33%), Positives = 170/319 (53%), Gaps = 15/319 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M+ H HV VLL + I +L+ P + +DAT G G+S ++ A D Sbjct: 1 MTKEFH-----HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFD 55 Query: 66 RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120 +D A+ Q+ + Y E+ + + F LQ + + GV DG+ +DLGVSS Q+D Sbjct: 56 QDQNAIDNAQKRLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQ 115 Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS++K PLDMRM+ ++A +VVN + DL RI GE+K + +IA I + Sbjct: 116 RERGFSYKKDAPLDMRMNQDASLTAYEVVNHYDYHDLIRIFFKYGEDKFSKQIARKIEQA 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R+ P +TT +L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A Sbjct: 176 REVKPIETTTELAEIIKLVKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDM 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L G + V++FHSLEDRL K+ F S + + + +++K ++P+ E Sbjct: 236 LALDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAE 295 Query: 299 DVAFNRRSRSAKLRAGMRT 317 ++ N RS SAKLR + Sbjct: 296 ELEANNRSHSAKLRVARKI 314 >gi|301793586|emb|CBW35963.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae INV104] gi|332204336|gb|EGJ18401.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae GA47901] Length = 316 Score = 376 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 106/319 (33%), Positives = 169/319 (52%), Gaps = 15/319 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M+ H HV VLL + I +L+ P + +DAT G G+S ++ A D Sbjct: 1 MTKEFH-----HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFD 55 Query: 66 RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120 +D A+ Q+ + Y E+ + + F LQ + + GV DG+ +DLGVSS Q+D Sbjct: 56 QDQNAIDNAQKRLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQ 115 Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS++K PLDMRM+ ++A +VVN + DL RI GE+K + +IA I + Sbjct: 116 RERGFSYKKDAPLDMRMNQDASLTAYEVVNNYDYHDLVRIFFKYGEDKFSKQIARKIEQA 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R+ P +TT +L+ +I+ + + HPA + FQA+RI VN+E+ + + A Sbjct: 176 REVKPIETTTELAEIIKLVKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIHQAMDM 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L G + V++FHSLEDRL K+ F S + + + +++K ++P+ E Sbjct: 236 LALDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAE 295 Query: 299 DVAFNRRSRSAKLRAGMRT 317 ++ N RS SAKLR + Sbjct: 296 ELEANNRSHSAKLRVARKI 314 >gi|307126547|ref|YP_003878578.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae 670-6B] gi|306483609|gb|ADM90478.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae 670-6B] Length = 316 Score = 376 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 106/319 (33%), Positives = 171/319 (53%), Gaps = 15/319 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M+ H HV VLL + I +L+ P + +DAT G G+S ++ A D Sbjct: 1 MTKEFH-----HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFD 55 Query: 66 RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120 +D A+ Q+ + Y E+ + + F LQ + + GV DG+ +DLGVSS Q+D Sbjct: 56 QDQNAIDNAQKRLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQ 115 Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS++K PLDMRM+ ++A +VVN + DL RI GE+K + +IA I + Sbjct: 116 RERGFSYKKDAPLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQV 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R+ P +TT +L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A + Sbjct: 176 REVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMEM 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L G + V++FHSLEDRL K+ F S + + + +++K ++P+ E Sbjct: 236 LALDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAE 295 Query: 299 DVAFNRRSRSAKLRAGMRT 317 ++ N RS SAKLR + Sbjct: 296 ELEANNRSHSAKLRVARKI 314 >gi|78221625|ref|YP_383372.1| S-adenosyl-methyltransferase MraW [Geobacter metallireducens GS-15] gi|123572785|sp|Q39YM7|RSMH_GEOMG RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|78192880|gb|ABB30647.1| methyltransferase [Geobacter metallireducens GS-15] Length = 313 Score = 376 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 114/307 (37%), Positives = 180/307 (58%), Gaps = 10/307 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+ V+ +V+ALL+P PG V +D T G G++R + S ++ DRDP A++ + Sbjct: 6 HLSVMPAEVLALLSPRPGGVYVDGTLGGAGHARMILEASSPDGVLVGFDRDPEALAAASK 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + ++ L ++ F+ + + + G+D G + DLGVSS Q+D +RGFSFQ PL Sbjct: 66 RIASFGDRVRLVRSNFAAMDESLATLGIDTIDGFLLDLGVSSHQLDTAERGFSFQVDAPL 125 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQTTQDL 191 DMRM +G +A+D+VN+ + +L RI+ GEE+ A RIA +VK R+ P ++T L Sbjct: 126 DMRMDPETGETAADLVNELSADELARIIREYGEERWAKRIASFVVKAREQHGPIESTLQL 185 Query: 192 SSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 ++ + + RIHPATR+FQALRI VN+E+ L +GL + + L GG +V+SF Sbjct: 186 VDCVKGAIPRAAWEERIHPATRTFQALRIAVNDELGSLERGLVAGIERLAPGGRGVVISF 245 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK F + + + + + +T K V+ ++VA N R+RSA Sbjct: 246 HSLEDRIVKTVFRRYAQGCTCPKMLPRCVCGNKPRVRILTGKPVMAGGDEVATNPRARSA 305 Query: 310 KLRAGMR 316 K+RA + Sbjct: 306 KVRAVEK 312 >gi|116629844|ref|YP_815016.1| SAM-dependent methyltransferase for cell envelope biogenesis [Lactobacillus gasseri ATCC 33323] gi|238853964|ref|ZP_04644321.1| S-adenosyl-methyltransferase MraW [Lactobacillus gasseri 202-4] gi|311110516|ref|ZP_07711913.1| S-adenosyl-methyltransferase MraW [Lactobacillus gasseri MV-22] gi|122273218|sp|Q042P4|RSMH_LACGA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|116095426|gb|ABJ60578.1| SAM-dependent methyltransferase for cell envelope biogenesis [Lactobacillus gasseri ATCC 33323] gi|238833409|gb|EEQ25689.1| S-adenosyl-methyltransferase MraW [Lactobacillus gasseri 202-4] gi|311065670|gb|EFQ46010.1| S-adenosyl-methyltransferase MraW [Lactobacillus gasseri MV-22] Length = 315 Score = 376 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 109/311 (35%), Positives = 170/311 (54%), Gaps = 13/311 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76 H VLL + I LNP + +DATFG GG++R + VI D+D +A+S +E Sbjct: 4 KHKSVLLHETIDNLNPKDDGLYVDATFGGGGHARYLLSKLNRGTVIGFDQDEYAISMAKE 63 Query: 77 TMRD-----YKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSF 127 + + + + L F L++ + + G+DG+ +DLGVSS Q D +RGFS+ Sbjct: 64 SFAEELKPGAEPKLILVHDNFCHLKENLVELGISDGIDGIYYDLGVSSPQFDQPERGFSY 123 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + LDMRM S + A +VN + K+L+ IL G+EK + +IA IV RR+ P Sbjct: 124 RFDARLDMRMDQSQELDAYTIVNTWSQKELSDILYKYGDEKFSRQIARKIVDRRREKPIV 183 Query: 187 TTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT DL +I+ + ++ + HPA +SFQA+R+ VNNE+ L + L A K LK GG + Sbjct: 184 TTFDLVDVIKDAIPAYARRSGGHPAKKSFQAIRVAVNNELGVLQESLEEAIKLLKPGGRI 243 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V++F S ED++VKK F S + + + I++K ++ + +++ N R Sbjct: 244 SVITFQSHEDKIVKKIFKKYSEVEIPRGMPMIPADSKPTLRLISRKPIMASSDELEENNR 303 Query: 306 SRSAKLRAGMR 316 S SAKLR + Sbjct: 304 SHSAKLRVAEK 314 >gi|15900265|ref|NP_344869.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae TIGR4] gi|111657194|ref|ZP_01407969.1| hypothetical protein SpneT_02001591 [Streptococcus pneumoniae TIGR4] gi|262827209|sp|P0CB58|RSMH_STRPN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|14971807|gb|AAK74509.1| yllC protein [Streptococcus pneumoniae TIGR4] Length = 316 Score = 376 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 106/319 (33%), Positives = 170/319 (53%), Gaps = 15/319 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M+ H HV VLL + I +L+ P + +DAT G G+S ++ A D Sbjct: 1 MTKEFH-----HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFD 55 Query: 66 RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120 +D A+ Q+ + Y E+ + + F LQ + + GV DG+ +DLGVSS Q+D Sbjct: 56 QDQNAIDNAQKRLAPYIEKGMVTFIKDNFRHLQACLREAGVQEIDGICYDLGVSSPQLDQ 115 Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS++K PLDMRM+ ++A +VVN + DL RI GE+K + +IA I + Sbjct: 116 RERGFSYKKDAPLDMRMNQDASLTAYEVVNNYDYHDLVRIFFKYGEDKFSKQIARKIEQA 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R+ P +TT +L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A Sbjct: 176 REVKPIETTTELAEIIKLVKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDM 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L G + V++FHSLEDRL K+ F S + + + +++K ++P+ E Sbjct: 236 LALDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAE 295 Query: 299 DVAFNRRSRSAKLRAGMRT 317 ++ N RS SAKLR + Sbjct: 296 ELEANNRSHSAKLRVVRKI 314 >gi|302332784|gb|ADL22977.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus JKD6159] Length = 311 Score = 376 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 100/308 (32%), Positives = 161/308 (52%), Gaps = 9/308 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H+ V+L + I LN V +D T G G++ +IA+D+D A+ Sbjct: 1 MFHHISVMLNETIDYLNVKENGVYIDCTLGGAGHALYLLNQLNDDGRLIAIDQDQAAIDN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E ++D+ + + + F +L + D + VDG+ +DLGVSS Q+D +RGFS+ Sbjct: 61 AKEVLKDHLHKVTFVHSNFRELTQILKDLNIEKVDGIYYDLGVSSPQLDIPERGFSYHHD 120 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM + ++A ++VN + + L +I GEEK + +IA I R+ P TT Sbjct: 121 ATLDMRMDQTQELTAYEIVNNWSYEALVKIFYRYGEEKFSKQIARRIEAHREQQPITTTL 180 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I++ + + HPA R FQALRI VN+E+ + A + +K G + V+ Sbjct: 181 ELVDIIKEGIPAKARRKGGHPAKRVFQALRIAVNDELSAFEDSIEQAIELVKVDGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F R + A+ + + +K + T+ED+ N R+R Sbjct: 241 TFHSLEDRLCKQVFQEYEKGPEVPRGLPVVPEAYTPKLKRVNRKPITATEEDLDDNNRAR 300 Query: 308 SAKLRAGM 315 SAKLR Sbjct: 301 SAKLRVAE 308 >gi|309776027|ref|ZP_07671019.1| S-adenosyl-methyltransferase MraW [Erysipelotrichaceae bacterium 3_1_53] gi|308916309|gb|EFP62057.1| S-adenosyl-methyltransferase MraW [Erysipelotrichaceae bacterium 3_1_53] Length = 311 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 114/311 (36%), Positives = 166/311 (53%), Gaps = 9/311 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 + H VLL++ I L + +D T G GG+S ++ A DRD A+ Sbjct: 1 MMKHYSVLLQESIDNLAIRSDGIYVDGTLGRGGHSAEILARIPQGHLYAFDRDASAIEES 60 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +E + +L + FS ++ + +GV DG+V DLGVSS Q D RGFS++ Sbjct: 61 RERLTRIGSNVTLIHSNFSNVKSELEARGVTGIDGMVLDLGVSSPQFDEAQRGFSYRFDA 120 Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S +SA VVN+ ++L RI GEE A +IA I K R++ P +TT + Sbjct: 121 PLDMRMDQSQQLSAYQVVNEWEYQELVRIFFQFGEESFAKQIARKIEKARETKPIETTLE 180 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I+ + N + HPA + FQA+RI VN+E+ EL LR A L GG L V+S Sbjct: 181 LVDVIKSALPAKVLNKKGHPAKKVFQAIRIAVNDELGELQMVLRDALALLHVGGRLCVIS 240 Query: 250 FHSLEDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 F SLEDR+VK F + S + ++P + A ++ + KK + T++++ N RS Sbjct: 241 FQSLEDRIVKDTFVACSKPKQYDKRLPILPQDMEEAPYRLVNKKPITATEDELRENMRSH 300 Query: 308 SAKLRAGMRTV 318 SAKLR R Sbjct: 301 SAKLRCIERIR 311 >gi|197116881|ref|YP_002137308.1| S-adenosyl-methyltransferase MraW [Geobacter bemidjiensis Bem] gi|263447558|sp|B5EBP3|RSMH_GEOBB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|197086241|gb|ACH37512.1| SAM-dependent membrane protein methyltransferase MraW [Geobacter bemidjiensis Bem] Length = 312 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 117/308 (37%), Positives = 171/308 (55%), Gaps = 9/308 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 H+ VL ++V+ L+P G V +D T G G++ +I DRD A++ + Sbjct: 5 HHISVLPDEVLQALSPRSGGVYVDGTLGGAGHAGLILTASAPDGQLIGFDRDEEAIAVAR 64 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVV---FDLGVSSMQIDCGDRGFSFQKSGP 132 E ++ + + + F+ + + + GVDG+ DLGVSS Q+D +RGFSF P Sbjct: 65 ERLQVFGGRVRIIHRNFAGIAQALAEIGVDGIDGFVLDLGVSSHQLDRDERGFSFMHDAP 124 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM SG SA+D+VN +L RI+ GEE+ A R+A IVK R P +TT L Sbjct: 125 LDMRMDRSSGQSAADLVNTLPEGELYRIISEYGEERWAKRVASFIVKARDERPIETTLQL 184 Query: 192 SSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+ ++ +K R+HPATR+FQALRI VN E++ L +GL LK GG V+SF Sbjct: 185 VDVIKGSIPKAKWEERLHPATRTFQALRIAVNEELKSLEEGLEGLLSLLKQGGRGAVISF 244 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK+ F + + + I F+ +T+K + + +VA N RSRSA Sbjct: 245 HSLEDRIVKEGFRAAATGCTCPKELPICICGRVPRFKLVTRKPITAGEAEVAANPRSRSA 304 Query: 310 KLRAGMRT 317 KLR + Sbjct: 305 KLRVVEKI 312 >gi|269838022|ref|YP_003320250.1| S-adenosyl-methyltransferase MraW [Sphaerobacter thermophilus DSM 20745] gi|269787285|gb|ACZ39428.1| S-adenosyl-methyltransferase MraW [Sphaerobacter thermophilus DSM 20745] Length = 326 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 129/305 (42%), Positives = 182/305 (59%), Gaps = 8/305 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H PV+L + + LL PG +DATFG GG++R+ + V+ALD DP AV+ + Sbjct: 20 HQPVMLAESLNLLQVRPGGRYIDATFGGGGHTRAILEASSPDGRVLALDADPAAVARAEA 79 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + ++ F+Q+ G VDGV+ DLG SS QID RGFSFQ+ GPL Sbjct: 80 LAEEVGPRLTVRHGNFAQIARLARAAGFDAVDGVLMDLGFSSFQIDEPSRGFSFQRPGPL 139 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMR + G SA ++VN + DL+RI+ GEE +A RIA AIV R+ P +TT L+ Sbjct: 140 DMRFDPTTGSSAREIVNTWDEADLSRIIFEYGEEPKARRIARAIVAARRERPIETTDHLA 199 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +++++ V + IHPATR+FQALRI VN E+E L QGL A L GG L+V++FHS Sbjct: 200 AIVEQAVGGRRGRAIHPATRTFQALRIAVNRELEVLEQGLAGALDVLAPGGRLVVIAFHS 259 Query: 253 LEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK++F + + + + H A + +T K + PT+ + A N RSRSA+L Sbjct: 260 LEDRIVKQYFRTEARDCICPPETPVCVCGHRARLRVVTPKPLRPTEAEQALNPRSRSARL 319 Query: 312 RAGMR 316 RA R Sbjct: 320 RAAER 324 >gi|114327101|ref|YP_744258.1| S-adenosyl-methyltransferase MraW [Granulibacter bethesdensis CGDNIH1] gi|122327917|sp|Q0BV17|RSMH_GRABC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|114315275|gb|ABI61335.1| S-adenosyl-methyltransferase mraW [Granulibacter bethesdensis CGDNIH1] Length = 334 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 140/310 (45%), Positives = 189/310 (60%), Gaps = 9/310 (2%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAV 71 H + G HVPVLL +V+ L+PAPG V LD TFG GGY+R+ + V A+DRDP A+ Sbjct: 18 HSSTGTHVPVLLNEVLETLSPAPGGVFLDGTFGGGGYTRAILDTAEDSTVWAVDRDPAAI 77 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQ 128 + G+ Y+ + L Q FSQ+ + D+GV DG+V D+GVSS QID DRGFSF+ Sbjct: 78 TRGEALAARYRGRLHLIQGNFSQMASLLTDRGVNALDGIVLDIGVSSFQIDDPDRGFSFR 137 Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM+ G SA+D++ + ++ IL LGEE+++ +IA AIV R P TT Sbjct: 138 TDGPLDMRMAGEGTSAADLIARLPEAEIANILYELGEERKSRQIARAIVSARAEEPITTT 197 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+S+I+ V + + I PATRSFQALRI VN+E+ EL + L+ A L+ GG L++V Sbjct: 198 GRLASIIRCVVPPDR-SGIDPATRSFQALRIAVNDELGELERALQQATNLLQPGGRLVIV 256 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA---HPAVFQSITKKVVVPTQEDVAFNRR 305 SFHSLEDR+VK+F +G + P F+ IT K V P + N R Sbjct: 257 SFHSLEDRIVKRFMNDAAGNAPSPSRYDPRGLVARTEPRFRLITSKAVRPGTAEQNANPR 316 Query: 306 SRSAKLRAGM 315 SRSA+LRA Sbjct: 317 SRSARLRAIE 326 >gi|227824963|ref|ZP_03989795.1| S-adenosyl-methyltransferase mraW [Acidaminococcus sp. D21] gi|226905462|gb|EEH91380.1| S-adenosyl-methyltransferase mraW [Acidaminococcus sp. D21] Length = 311 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 103/307 (33%), Positives = 168/307 (54%), Gaps = 11/307 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQE 76 H VLL + + + P + +D T G G+S + +I +D+D A+ + Sbjct: 7 HKSVLLRESVDWIVTDPKGIYVDCTLGGAGHSHAIAEELDPEGLLIGIDQDEDAIMAASK 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + D + + + F L + VDG+ FDLGVSS Q+D +RGFS+ GPL Sbjct: 67 RLEDAACKVKIVHSNFRNLGTILEGLNLQEVDGIFFDLGVSSYQLDTPERGFSYMHDGPL 126 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM G ++A+DVVN +DL ++ GEE+ + RIA IV++R+ P +TT DL Sbjct: 127 DMRMDQEGKLTAADVVNTYKEEDLADLIYKYGEERWSRRIAQFIVEKRKEKPLRTTSDLV 186 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 S+I+ + + + HPA R+FQA+RI VN+E++ L + +A K LK GG + V++FH Sbjct: 187 SVIKAAIPKKARQDGPHPAKRTFQAIRIEVNDELKILDSTMETAVKHLKKGGRIGVITFH 246 Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR++K+ F + + + H + + K +P++ ++ N R+RSA+ Sbjct: 247 SLEDRIIKQSFKRMAKGCICPPELPVCVCGHKPELKKL--KEFIPSETELEDNPRARSAR 304 Query: 311 LRAGMRT 317 LR ++ Sbjct: 305 LRGAIKI 311 >gi|257463543|ref|ZP_05627936.1| methyltransferase [Fusobacterium sp. D12] gi|317061098|ref|ZP_07925583.1| S-adenosyl-methyltransferase mraW [Fusobacterium sp. D12] gi|313686774|gb|EFS23609.1| S-adenosyl-methyltransferase mraW [Fusobacterium sp. D12] Length = 313 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 110/307 (35%), Positives = 174/307 (56%), Gaps = 10/307 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H+PVL E+ + L P + +D T G G +S K +I++D+D A++ ++ Sbjct: 9 HIPVLYEETLENLLWNPDGIYIDCTLGGGSHSEGILKRLSEKGRLISIDQDASAIAFCKK 68 Query: 77 TMRDYKEQFSLFQATFSQLQ--DYVPD-KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + Y +Q+S+FQ F + Y+ VDG++ D+GVSS Q+D G+RGFS++ L Sbjct: 69 RLEKYGKQWSVFQNNFENIDIVSYLAGLDKVDGILMDIGVSSTQLDDGERGFSYRYDAKL 128 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +SA +VVNQ +DL RIL GEE+ A +IA I + R+ P +TT +L Sbjct: 129 DMRMNAEQELSAYEVVNQYAEQDLVRILFEYGEERYAKKIAAFICENRKEKPIETTGELV 188 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++I++ + HPA ++FQA+R+ VN E+E L ++ + + LK G L +++FHS Sbjct: 189 AIIKRAYP--ERAAKHPAKKTFQAIRMEVNRELEVLETAIQKSVELLKPKGRLAIITFHS 246 Query: 253 LEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDRLVK F + + A + ITKK ++P++E+V N R+ S+KL Sbjct: 247 LEDRLVKTVFKDLARACKCPPELPVCVCGGKAKVKIITKKPILPSEEEVGKNNRAHSSKL 306 Query: 312 RAGMRTV 318 R R Sbjct: 307 RIVERLA 313 >gi|317129306|ref|YP_004095588.1| S-adenosyl-methyltransferase MraW [Bacillus cellulosilyticus DSM 2522] gi|315474254|gb|ADU30857.1| S-adenosyl-methyltransferase MraW [Bacillus cellulosilyticus DSM 2522] Length = 310 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 103/309 (33%), Positives = 165/309 (53%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSC 73 + +H VL E+ + LN V +D T G GG+S +I+ D+D A+S Sbjct: 1 MFEHETVLKEETVKGLNIHEDGVYVDCTLGGGGHSERIASMLGANGKLISFDQDEVALSH 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E + ++++ + F L+ + G VDG VFDLGVSS Q D +RGFS++ Sbjct: 61 AKERLAPFRDKIIFVHSNFQYLKQELTHLGYSSVDGFVFDLGVSSPQFDEPERGFSYRFD 120 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM ++A +VVN +D+ +++ GEE+ A IA I K R+ +P +TT Sbjct: 121 APLDMRMDRGQSLTAYEVVNNWPFEDIMKVISRYGEERFAKHIARKIEKAREVSPIKTTF 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I+ + ++ HPA R+FQA+RI VN+E+ Q L A G + V+ Sbjct: 181 ELVDIIKDAIPAPARRKGGHPAKRTFQAIRIAVNDELNVFEQALYDAIDMTTEKGRIAVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+ K F ++S R + +H + KK ++ ++E++ N R++ Sbjct: 241 TFHSLEDRICKHVFKNKSTPKDLPRGLPVIPESHKPELMLVNKKPILASEEELENNSRAQ 300 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 301 SAKLRIAEK 309 >gi|160946332|ref|ZP_02093541.1| hypothetical protein PEPMIC_00292 [Parvimonas micra ATCC 33270] gi|158447448|gb|EDP24443.1| hypothetical protein PEPMIC_00292 [Parvimonas micra ATCC 33270] Length = 310 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 105/307 (34%), Positives = 167/307 (54%), Gaps = 8/307 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76 +H+P++L +VI L+ P + +D T G G+S K +I +D+D A+S ++ Sbjct: 4 NHIPIMLNEVIDNLDIKPNGIYVDLTVGGAGHSTEILKRIKNGKLICVDQDEEALSVARD 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + +++ F ++ + G VDGV+ D+GVSS QID G RGFS+ PL Sbjct: 64 RLLKISDNVLFYKSNFENFKEILDYFGIDKVDGVLLDIGVSSYQIDNGQRGFSYMIDAPL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM SA DVVN N +DL I GEEK RI IV R+ +TT +L Sbjct: 124 DMRMDRDLKKSAFDVVNYYNSEDLEYIFYNYGEEKWTKRIVEFIVNYRKEKLIETTFELV 183 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I++ + + + HPA R FQA+RI VN E+E + + + + L G L +++FH Sbjct: 184 DIIERAIPKAVRAKGGHPAKRVFQAIRIEVNRELEVIKKVIPDIVERLNKNGRLCIITFH 243 Query: 252 SLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK F + + + + + + + +TKK +VP++E++ N RS+S+K Sbjct: 244 SLEDRIVKDSFKELARGCICPKELYVCVCNNKPKIKILTKKPLVPSEEEMNRNPRSKSSK 303 Query: 311 LRAGMRT 317 LR + Sbjct: 304 LRICSKI 310 >gi|258423777|ref|ZP_05686663.1| methylase MraW [Staphylococcus aureus A9635] gi|257846009|gb|EEV70037.1| methylase MraW [Staphylococcus aureus A9635] Length = 311 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 100/308 (32%), Positives = 161/308 (52%), Gaps = 9/308 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H+ V+L + I LN V +D T G G++ +IA+D+D A+ Sbjct: 1 MFHHISVMLNETIDYLNVKENGVYIDCTLGGAGHALYLLNQLNDDGRLIAIDQDQTAIDN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E ++D+ + + + F +L + D + VDG+ +DLGVSS Q+D +RGFS+ Sbjct: 61 AKEVLKDHLHKVTFVHSNFRELTQILKDLNIEKVDGIYYDLGVSSPQLDIPERGFSYHHD 120 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM + ++A ++VN + + L +I GEEK + +IA I R+ P TT Sbjct: 121 ATLDMRMDQTQELTAYEIVNNWSYEALVKIFYRYGEEKFSKQIARRIEAHREQQPITTTL 180 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I++ + + HPA R FQALRI VN+E+ + A + +K G + V+ Sbjct: 181 ELVDIIKEGIPAKARRKGGHPAKRVFQALRIAVNDELSAFEDSIEQAIELVKVEGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F R + A+ + + +K + T+ED+ N R+R Sbjct: 241 TFHSLEDRLCKQVFQEYEKGPEVPRGLPVIPEAYTPKLKRVNRKPITATEEDLDDNNRAR 300 Query: 308 SAKLRAGM 315 SAKLR Sbjct: 301 SAKLRVAE 308 >gi|238855278|ref|ZP_04645597.1| S-adenosyl-methyltransferase MraW [Lactobacillus jensenii 269-3] gi|260664637|ref|ZP_05865489.1| MraW methylase [Lactobacillus jensenii SJ-7A-US] gi|282932429|ref|ZP_06337854.1| S-adenosyl-methyltransferase MraW [Lactobacillus jensenii 208-1] gi|313471907|ref|ZP_07812399.1| S-adenosyl-methyltransferase MraW [Lactobacillus jensenii 1153] gi|238832170|gb|EEQ24488.1| S-adenosyl-methyltransferase MraW [Lactobacillus jensenii 269-3] gi|239529171|gb|EEQ68172.1| S-adenosyl-methyltransferase MraW [Lactobacillus jensenii 1153] gi|260561702|gb|EEX27674.1| MraW methylase [Lactobacillus jensenii SJ-7A-US] gi|281303378|gb|EFA95555.1| S-adenosyl-methyltransferase MraW [Lactobacillus jensenii 208-1] Length = 317 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 108/314 (34%), Positives = 170/314 (54%), Gaps = 13/314 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSC 73 T H VLL + I LN + +DATFG GG++R +N ++ D+D +A++ Sbjct: 3 TNFKHTSVLLRETIDNLNVKDNGLYVDATFGGGGHARYLLSKLNNGILVGFDQDNYAINA 62 Query: 74 GQETMRDY-----KEQFSLFQATFSQLQDYVP----DKGVDGVVFDLGVSSMQIDCGDRG 124 ++ DY + + FS + + + + G+DG+ +DLGVSS Q D DRG Sbjct: 63 AKDNFYDYLSDNHQPHLIMVHDNFSHVTENLNKLGFNDGIDGIYYDLGVSSPQFDQPDRG 122 Query: 125 FSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 FS++ LDMRM+ + A VVN + L IL G+EK + +IA IV+RRQ Sbjct: 123 FSYRFDARLDMRMNQEQELDAYQVVNSYSQSQLADILYQYGDEKFSRQIARKIVQRRQQK 182 Query: 184 PFQTTQDLSSLIQKTVYFSKNN-RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 P +TT +L LI++ + +K HPA +SFQA+R+ VN+E++ L L+ A + LK G Sbjct: 183 PIETTFELVELIKEAIPAAKRRTGGHPAKKSFQAIRVEVNHELDSLKASLQEAIELLKPG 242 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G + V++F S ED++VKK F S + + + + + +K ++ T ++A Sbjct: 243 GRISVITFQSHEDKIVKKIFKQNSEVEVPRGIPVIPDNLKPKLKLVNRKPILATASELAD 302 Query: 303 NRRSRSAKLRAGMR 316 N RS SAKLR + Sbjct: 303 NNRSHSAKLRVAEK 316 >gi|218281029|ref|ZP_03487608.1| hypothetical protein EUBIFOR_00167 [Eubacterium biforme DSM 3989] gi|218217710|gb|EEC91248.1| hypothetical protein EUBIFOR_00167 [Eubacterium biforme DSM 3989] Length = 308 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 106/305 (34%), Positives = 162/305 (53%), Gaps = 7/305 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76 +H+ VLL + I +L + +D T G GG+S K ++ A D D A+ Sbjct: 2 EHISVLLNESIDMLQIKEDGIYVDCTLGRGGHSSEILKRLTSGHLYAFDCDQNAIDESMP 61 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ +QF+L + F L+ + +GV DG+ DLGVSS Q D RGFS++ L Sbjct: 62 RLKAIGDQFTLIHSPFENLKSELAKRGVNFVDGIFMDLGVSSPQFDDAQRGFSYRWDARL 121 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S + A VVN + +DL RIL GEE A +IA I K R+ AP +TT +L Sbjct: 122 DMRMDQSQELDAYVVVNTYDKEDLIRILKRYGEEPFAQKIADKICKAREIAPIETTFELV 181 Query: 193 SLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + + + HPA ++FQA+RI VN+E+E+L L L G + V++FH Sbjct: 182 DVIKSALPAAVLRKKGHPAKQTFQAIRIEVNHELEQLETVLHDGLTMLNPHGRMAVITFH 241 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+VK+ F + + + +Q + +K V+ + E++ N R+ SAKL Sbjct: 242 SLEDRIVKEIFKEVAVAKKVNKRLPQVGTENLEYQLVNRKPVLASSEELEMNNRAHSAKL 301 Query: 312 RAGMR 316 R + Sbjct: 302 RGIEK 306 >gi|225175505|ref|ZP_03729499.1| S-adenosyl-methyltransferase MraW [Dethiobacter alkaliphilus AHT 1] gi|225168834|gb|EEG77634.1| S-adenosyl-methyltransferase MraW [Dethiobacter alkaliphilus AHT 1] Length = 320 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 122/310 (39%), Positives = 187/310 (60%), Gaps = 10/310 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H PVLL++ ++ L P PG+V +D T G GG+SR+ + +IA+D+D A++ +E Sbjct: 6 HEPVLLQETLSALAPRPGEVFVDGTVGGGGHSRAILEKITPHGRLIAIDQDKNALAAAKE 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 T+ ++E + F+ LQD + +GV DG++ D+GVSS Q+D G+RGFSF PL Sbjct: 66 TLAPWREHVTFVHNNFANLQDVLESEGVQKVDGILLDIGVSSHQLDEGERGFSFNTEAPL 125 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQTTQDL 191 DMRM+ G++A+ +VN+ + ++LTRIL GEE A RIA +V RR++ P +TT L Sbjct: 126 DMRMNRDKGVTAAQLVNELDAEELTRILRDYGEELWARRIAEFMVARRKNHGPIETTGQL 185 Query: 192 SSLIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+ + R HPA R+FQALRI VN+E+ L + + LK GG L V++F Sbjct: 186 VDVIKAAIPARARRRGPHPARRTFQALRIAVNDELGVLERAVNDGIDCLKTGGRLAVITF 245 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VKK F R+ + + + A + +T K V ++++ N R+RSA Sbjct: 246 HSLEDRMVKKIFQHRAAGCQCPPGLPQCACGNQAHVKILTGKPVQAKEDELERNPRARSA 305 Query: 310 KLRAGMRTVE 319 KLRA ++ + Sbjct: 306 KLRAVIKVLN 315 >gi|49474464|ref|YP_032506.1| S-adenosyl-methyltransferase MraW [Bartonella quintana str. Toulouse] gi|54036185|sp|Q6G116|RSMH_BARQU RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|49239968|emb|CAF26373.1| hypothetical protein BQ08940 [Bartonella quintana str. Toulouse] Length = 332 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 163/322 (50%), Positives = 209/322 (64%), Gaps = 3/322 (0%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+PVLL+ V+A L P G ++D TFGAGGY+R+ G+ VIALDRDP AV GQ + Sbjct: 11 HIPVLLQPVLAGLMPLIGAKVIDGTFGAGGYTRALLNAGAQVIALDRDPHAVREGQSLVD 70 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 ++ + L Q FSQL V + VD V+ D+GVSSMQ D +RGFSFQK GPLDMRM+ Sbjct: 71 EFFPRLRLMQMEFSQLDRVVEE-KVDAVILDIGVSSMQFDEAERGFSFQKDGPLDMRMAQ 129 Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199 +G +A DVVN+ DL RI ILGEE+ A RIA I KRR PF T DL+ I+ V Sbjct: 130 TGFTAGDVVNRLKKDDLARIFKILGEERYAGRIARMIEKRRCVQPFLRTGDLAHAIEALV 189 Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259 +RIHPATR FQALRI+VN+EI ELA+GL +AE LK GG L VVSFHSLEDR+VK Sbjct: 190 GRKPGDRIHPATRVFQALRIYVNDEIGELARGLFAAESVLKPGGRLGVVSFHSLEDRMVK 249 Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319 +FF++RSG R++ A PA F S+ K + ++E++ N RSRSA+LR G+RT Sbjct: 250 RFFSARSGGCRRSRYLPEIEAVPATFFSLFKGAITASKEELQQNPRSRSARLRIGIRTEA 309 Query: 320 RSIEDDSFVHLPRLPTLSQFRG 341 + D + L ++ F G Sbjct: 310 ECLAKD--IKLFDFAEIASFEG 329 >gi|168490031|ref|ZP_02714230.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae SP195] gi|182683307|ref|YP_001835054.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae CGSP14] gi|221231213|ref|YP_002510365.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae ATCC 700669] gi|298230654|ref|ZP_06964335.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae str. Canada MDR_19F] gi|262827179|sp|B8ZL51|RSMH_STRPJ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262827224|sp|B2ISQ2|RSMH_STRPS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|182628641|gb|ACB89589.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae CGSP14] gi|183571591|gb|EDT92119.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae SP195] gi|220673673|emb|CAR68164.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae ATCC 700669] gi|332075180|gb|EGI85650.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae GA17570] Length = 316 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 106/319 (33%), Positives = 170/319 (53%), Gaps = 15/319 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M+ H HV VLL + I +L+ P + +DAT G G+S ++ A D Sbjct: 1 MTKEFH-----HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFD 55 Query: 66 RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120 +D A+ Q+ + Y E+ + + F LQ + + GV DG+ +DLGVSS Q+D Sbjct: 56 QDQNAIDNAQKRLAPYIEKGMVTFIKDNFRHLQARLRETGVQEIDGICYDLGVSSPQLDQ 115 Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS++K PLDMRM+ ++A +VVN + DL RI GE+K + +IA I + Sbjct: 116 RERGFSYKKDAPLDMRMNQDASLTAYEVVNNYDYHDLVRIFFKYGEDKFSKQIARKIEQA 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R+ P +TT +L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A Sbjct: 176 REVKPIETTTELAEIIKLVKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDM 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L G + V++FHSLEDRL K+ F S + + + +++K ++P+ E Sbjct: 236 LALDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAE 295 Query: 299 DVAFNRRSRSAKLRAGMRT 317 ++ N RS SAKLR + Sbjct: 296 ELEANNRSHSAKLRVVRKI 314 >gi|167758763|ref|ZP_02430890.1| hypothetical protein CLOSCI_01105 [Clostridium scindens ATCC 35704] gi|167663503|gb|EDS07633.1| hypothetical protein CLOSCI_01105 [Clostridium scindens ATCC 35704] Length = 311 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 103/307 (33%), Positives = 169/307 (55%), Gaps = 9/307 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 +H VLL++ I LN P + +D T G GG++ C ++I +D+D A+ Sbjct: 4 EHKSVLLDETINGLNIKPDGIYVDGTLGGGGHAYEVCTRLGTKGSIIGIDQDAAAIEAAD 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + D+ E+ ++ ++ + ++ + + G VDG++ DLGVSS Q+D +RGFS+++ P Sbjct: 64 ARLNDFGEKVTIVRSNYCDMKSRLHELGIDKVDGIILDLGVSSYQLDTAERGFSYREDAP 123 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM ++A D+VN + DL R++ GE+K A IA IV +R P +TT L Sbjct: 124 LDMRMDTRQKMTARDIVNDYSEMDLYRVIRDYGEDKFAKNIAKHIVAQRGKGPIETTGQL 183 Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 + +I+ + + HPA R+FQA+RI +N E+E L L + L GG L +++F Sbjct: 184 TEIIRGAIPMKYQKKSGHPAKRTFQAIRIELNRELEVLRDTLDDMIELLNPGGRLCIITF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK F + + + +T+K ++P++ ++ N RS+SA Sbjct: 244 HSLEDRIVKSAFKKNENPCTCPPDFPVCVCGNVSKGSIVTRKPILPSKYEMEANSRSKSA 303 Query: 310 KLRAGMR 316 KLR R Sbjct: 304 KLRIFER 310 >gi|293402027|ref|ZP_06646166.1| S-adenosyl-methyltransferase MraW [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304419|gb|EFE45669.1| S-adenosyl-methyltransferase MraW [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 311 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 112/311 (36%), Positives = 171/311 (54%), Gaps = 9/311 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74 + H VLL++ I L+ + +D T G GG+S K ++ A DRD A+ Sbjct: 1 MNKHYSVLLQESIEGLHIQHDGIYVDGTLGRGGHSCEILKQIPDGHLYAFDRDASAIEES 60 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + F+ + FS L++ + GV DG+V DLGVSS Q D +RGFS++ Sbjct: 61 TPRLLQVADNFTCIHSPFSHLKEELSAYGVNRIDGLVLDLGVSSPQFDEAERGFSYRFDA 120 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S ++A ++VN + +DL +I GEE A +IA I K+R P +TT + Sbjct: 121 PLDMRMDQSQALNAYEIVNTWSYQDLVKIFYTYGEETFAKQIARNIEKKRIDKPIRTTFE 180 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I+ ++ N + HPA + FQA+RI VN+E+ EL + L+ A + L G + V+S Sbjct: 181 LVDVIKASLPAKVLNKKGHPAKKVFQAIRIAVNDELRELEEVLQEALQMLNPHGRICVIS 240 Query: 250 FHSLEDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 F SLEDR+VK+ F + S + ++PS+ A ++ I KK + +E++ N RS Sbjct: 241 FQSLEDRIVKEAFQTASRPKQYDKRIPILPSDMEEAPYKLINKKPITAQEEELMENNRSH 300 Query: 308 SAKLRAGMRTV 318 SAKLR R Sbjct: 301 SAKLRIIERIR 311 >gi|317058284|ref|ZP_07922769.1| S-adenosyl-methyltransferase mraW [Fusobacterium sp. 3_1_5R] gi|313683960|gb|EFS20795.1| S-adenosyl-methyltransferase mraW [Fusobacterium sp. 3_1_5R] Length = 318 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 111/320 (34%), Positives = 179/320 (55%), Gaps = 12/320 (3%) Query: 9 MSSAIHHTIGD--HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIA 63 M IG+ H+PVL E+ + L P + +D T G G +S K +I+ Sbjct: 1 MGEKDMQEIGNEYHIPVLYEETLDQLVWNPDGIYIDCTLGGGSHSEGILKRLSEKGRLIS 60 Query: 64 LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ--DYVPD-KGVDGVVFDLGVSSMQIDC 120 +D+D A++ ++ + Y +Q+S+FQ F + Y+ VDG++ D+GVSS Q+D Sbjct: 61 IDQDANAIAFCKKRLEKYGKQWSVFQNNFENIDIVSYLAGVDKVDGILMDIGVSSTQLDD 120 Query: 121 GDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 G+RGFS++ LDMRM+ +SA +VVN +DL RIL GEE+ A +IA I + Sbjct: 121 GERGFSYRYDAKLDMRMNKEQDLSAYEVVNTYAEQDLVRILFEYGEERHAKKIASFICEN 180 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 R+ P +TT +L ++I++ +S+ HPA ++FQA+RI VN E+E L + ++ + L Sbjct: 181 RKEKPIETTGELVAIIKRA--YSERASKHPAKKTFQAIRIEVNRELEVLEKAIKKSVDLL 238 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQE 298 K G L +++FHSLEDRLVK F + + A + +TKK ++P+++ Sbjct: 239 KPKGHLAIITFHSLEDRLVKTVFKDLATACKCPPELPVCVCGGKAKVKILTKKPIIPSED 298 Query: 299 DVAFNRRSRSAKLRAGMRTV 318 ++ N R+ S+KLR R Sbjct: 299 ELGKNNRAHSSKLRVVERLA 318 >gi|82750786|ref|YP_416527.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus RF122] gi|123549021|sp|Q2YXE3|RSMH_STAAB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|82656317|emb|CAI80731.1| S-adenosyl-methyltransferase [Staphylococcus aureus RF122] Length = 311 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 99/308 (32%), Positives = 161/308 (52%), Gaps = 9/308 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H+ V+L + I LN V +D T G G++ +IA+D+D A+ Sbjct: 1 MFHHISVMLNETIDYLNVKENGVYIDCTLGGAGHALYLLNQLNDDGRLIAIDQDQTAIDN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 ++ ++++ + + + F +L + D + VDG+ +DLGVSS Q+D +RGFS+ Sbjct: 61 AKKVLKEHLHKVTFVHSNFRELTQILKDLNIEKVDGIYYDLGVSSPQLDIPERGFSYHHD 120 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM + ++A ++VN + + L +I GEEK + +IA I R+ P TT Sbjct: 121 ATLDMRMDQTQELTAYEIVNNWSYEALVKIFYRYGEEKFSKQIARRIEAHREQQPITTTL 180 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I++ + + HPA R FQALRI VN+E+ + A + +K G + V+ Sbjct: 181 ELVDIIKEGIPAKARRKGGHPAKRVFQALRIAVNDELSAFEDSIEQAIELVKVDGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F R + A+ + I +K + T+ED+ N R+R Sbjct: 241 TFHSLEDRLCKQVFQEYEKGPEVPRGLPVIPEAYTPKLKRINRKPITATEEDLDDNNRAR 300 Query: 308 SAKLRAGM 315 SAKLR Sbjct: 301 SAKLRVAE 308 >gi|157151600|ref|YP_001449889.1| S-adenosyl-methyltransferase MraW [Streptococcus gordonii str. Challis substr. CH1] gi|262826721|sp|A8AVS9|RSMH_STRGC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|157076394|gb|ABV11077.1| S-adenosyl-methyltransferase MraW [Streptococcus gordonii str. Challis substr. CH1] Length = 316 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 107/319 (33%), Positives = 168/319 (52%), Gaps = 15/319 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M++ H HV VLL + I L+ P V +DAT G G+S ++ A D Sbjct: 1 MTNEFH-----HVTVLLHETIDYLDVKPDGVYVDATLGGAGHSEYLLSKLSPKGHLYAFD 55 Query: 66 RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDC 120 +D A+ ++ + Y E+ + Q F L+ + GVD G+ +DLGVSS Q+D Sbjct: 56 QDATAIEHAKKRLAPYIEKGMVTFVQDNFRHLKLQLEKLGVDEIDGICYDLGVSSPQLDE 115 Query: 121 GDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS+++ PLDMRM+ + SA VVN + DL RI GE+K + +IA I + Sbjct: 116 RERGFSYKQDAPLDMRMNRHADFSAYQVVNDYDYHDLVRIFFKYGEDKFSKQIARKIEQA 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 RQ P +TT +L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A Sbjct: 176 RQIKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDL 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L G + V++FHSLEDRL K+ F S + + + I++K ++P+ E Sbjct: 236 LAVDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPDDLKPKLELISRKPILPSAE 295 Query: 299 DVAFNRRSRSAKLRAGMRT 317 ++ N R+ SAKLR + Sbjct: 296 ELELNNRAHSAKLRVAKKV 314 >gi|303259429|ref|ZP_07345406.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae SP-BS293] gi|303261184|ref|ZP_07347133.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae SP14-BS292] gi|303263511|ref|ZP_07349434.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae BS397] gi|303265804|ref|ZP_07351702.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae BS457] gi|303267765|ref|ZP_07353567.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae BS458] gi|302638021|gb|EFL68507.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae SP14-BS292] gi|302639363|gb|EFL69821.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae SP-BS293] gi|302642461|gb|EFL72806.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae BS458] gi|302644712|gb|EFL74961.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae BS457] gi|302647284|gb|EFL77508.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae BS397] Length = 316 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 106/319 (33%), Positives = 172/319 (53%), Gaps = 15/319 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M+ H HV VLL + I +L+ P + +DAT G G+S ++ A D Sbjct: 1 MTKEFH-----HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFD 55 Query: 66 RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120 +D A+ Q+ + Y E+ + + F LQ + + GV DG+ +DLGVSS Q+D Sbjct: 56 QDQNAIDNAQKRLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQ 115 Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS++K PLDMRM+ ++A +VVN + DL RI GE+K + +IA I + Sbjct: 116 RERGFSYKKDAPLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQV 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R+ P +TT +L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A + Sbjct: 176 REVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMEM 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L G + V++FHSLEDRL K+ F S + + + + +++K ++P+ E Sbjct: 236 LALDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKSKMELVSRKPILPSAE 295 Query: 299 DVAFNRRSRSAKLRAGMRT 317 ++ N RS SAKLR + Sbjct: 296 ELEANNRSHSAKLRVARKI 314 >gi|154245796|ref|YP_001416754.1| S-adenosyl-methyltransferase MraW [Xanthobacter autotrophicus Py2] gi|263504945|sp|A7IGF4|RSMH_XANP2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|154159881|gb|ABS67097.1| S-adenosyl-methyltransferase MraW [Xanthobacter autotrophicus Py2] Length = 345 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 136/321 (42%), Positives = 192/321 (59%), Gaps = 5/321 (1%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQE 76 H+PV+L +V+A L P +D TFGAGGY+R V+A+DRDP A++ G + Sbjct: 17 ARHLPVMLAEVLAHLAPKDAGRYVDGTFGAGGYTRGILNAADCRVLAIDRDPTAIAAGAD 76 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + + +L FS+L + DGVV D+GVSSMQ+D +RGFSF++ GPL Sbjct: 77 LVAEAAGRLTLVNDRFSRLDAVAQEHDFSPLDGVVLDIGVSSMQLDQAERGFSFRRDGPL 136 Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 DMRM +G SA+D+V + L ++ LGEE+ + IA AIVK R +P T L+ Sbjct: 137 DMRMGDTGPSAADLVATLDEVQLAHLIWSLGEERHSRPIARAIVKARDESPITRTAQLAE 196 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 ++ + V+ K +HPATR+FQALRI VN E+ EL Q L +AE+AL GG L+VV+FHSL Sbjct: 197 IVSRIVW-QKPGEMHPATRTFQALRIAVNEELSELVQALVAAERALAPGGRLVVVTFHSL 255 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 EDR+VK F ++R+ A RH+ + F+ + K VV P ++VA N R+RSAKLRA Sbjct: 256 EDRIVKTFLSNRAKAPSASRHLPQAEGPEPAFRLVAKGVVEPGPDEVAGNPRARSAKLRA 315 Query: 314 GMRTVERSIEDDSFVHLPRLP 334 RT + + L P Sbjct: 316 AERTNAPAHPGGDLMGLLPAP 336 >gi|319892166|ref|YP_004149041.1| rRNA small subunit methyltransferase H [Staphylococcus pseudintermedius HKU10-03] gi|317161862|gb|ADV05405.1| rRNA small subunit methyltransferase H [Staphylococcus pseudintermedius HKU10-03] gi|323464735|gb|ADX76888.1| S-adenosyl-methyltransferase MraW [Staphylococcus pseudintermedius ED99] Length = 311 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 104/308 (33%), Positives = 162/308 (52%), Gaps = 9/308 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H+ VLL++ + LN V +D T G G+S+ +IA+D+D A++ Sbjct: 1 MFHHISVLLKETVDQLNIKEDGVYVDCTLGGAGHSQYLLNQLSDEGRLIAIDQDMTAINH 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E ++ + + F L + + + VDG+++DLGVSS Q+D +RGFS+Q + Sbjct: 61 AKEKLQQDLHKVTFVHNNFRNLANILAELNIDKVDGILYDLGVSSPQLDVPERGFSYQHN 120 Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM + +SA +VVN + + L +I GEEK + +IA I RRQ P +TT Sbjct: 121 AKLDMRMDQTQPLSAYEVVNTWSYETLVKIFFRYGEEKFSKQIARKIEARRQQQPIETTF 180 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 DL + I++ + + HPA R FQA+RI VN+E+ L A +K G + V+ Sbjct: 181 DLVACIKEGIPAKARRKGGHPAKRVFQAIRIAVNDELAAFEDSLEQAIDHVKVNGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F R + A+ + + +K +V D+ N R+R Sbjct: 241 TFHSLEDRLCKQMFQEYEKGPDVPRGLPVLPEAYTPKLKRVNRKPIVADATDLEDNHRAR 300 Query: 308 SAKLRAGM 315 SAKLR Sbjct: 301 SAKLRVAE 308 >gi|126741287|ref|ZP_01756965.1| S-adenosyl-methyltransferase MraW [Roseobacter sp. SK209-2-6] gi|126717605|gb|EBA14329.1| S-adenosyl-methyltransferase MraW [Roseobacter sp. SK209-2-6] Length = 330 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 154/330 (46%), Positives = 204/330 (61%), Gaps = 6/330 (1%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRD 67 M++ + G H+PVLL ++A + P G+ LD TFGAGGY+R + G++ VI +DRD Sbjct: 1 MTTDQNTANGPHIPVLLRPLLAAVAPVSGR-WLDGTFGAGGYTRGLLEEGASQVIGVDRD 59 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 P A Q +Y ++ L + FS++ +Y D +DGVV DLGVSSMQ+D +RGFSF Sbjct: 60 PLAFELAQPWATEYGDRLLLQEGVFSRMDEYAQD--LDGVVLDLGVSSMQLDLAERGFSF 117 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRMS SG SA+D+V L IL GEE+ + RIA AIVK R P T Sbjct: 118 MRDGPLDMRMSQSGPSAADLVANLEEAQLADILFQFGEERASRRIAKAIVKARAEEPITT 177 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T L+S+++ + SK + HPATRSFQALRI VN E EEL GL +AE+ALK GGLL V Sbjct: 178 TLQLASIVEGCLPRSKPGQSHPATRSFQALRIAVNAEYEELFNGLLAAERALKPGGLLAV 237 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPS-NAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+FHS+EDR+VK+FF R+GK P F+ +T+K V P E++A N RS Sbjct: 238 VTFHSVEDRMVKRFFQHRAGKTGRANRYAPELEEVETQFELVTRKAVGPDDEELAENPRS 297 Query: 307 RSAKLRAGMRT-VERSIEDDSFVHLPRLPT 335 RSA+LR G RT E + +P+L Sbjct: 298 RSARLRVGRRTMAEPVAISGKELGMPQLKE 327 >gi|329728859|gb|EGG65280.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus 21193] Length = 311 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 99/308 (32%), Positives = 161/308 (52%), Gaps = 9/308 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H+ V+L + I LN V +D T G G++ ++A+D+D A+ Sbjct: 1 MFHHISVMLNETIDYLNVKENGVYIDCTLGGAGHALYLLNQLNDDGRLLAIDQDQTAIDN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E ++D+ + + + F +L + D + VDG+ +DLGVSS Q+D +RGFS+ Sbjct: 61 AKEVLKDHLHKVTFVHSNFRELTQILKDLNIEKVDGIYYDLGVSSPQLDIPERGFSYHHD 120 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM + ++A ++VN + + L +I GEEK + +IA I R+ P TT Sbjct: 121 ATLDMRMDQTQELTAYEIVNNWSYEALVKIFYRYGEEKFSKQIARRIEAHREQQPITTTL 180 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I++ + + HPA R FQALRI VN+E+ + A + +K G + V+ Sbjct: 181 ELVDIIKEGIPAKARRKGGHPAKRVFQALRIAVNDELSAFEDSIEQAIELVKVDGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F R + A+ + + +K + T+ED+ N R+R Sbjct: 241 TFHSLEDRLCKQVFQEYEKGPEVPRGLPVIPEAYTPKLKRVNRKPITATEEDLDDNNRAR 300 Query: 308 SAKLRAGM 315 SAKLR Sbjct: 301 SAKLRVAE 308 >gi|256846968|ref|ZP_05552414.1| MraW methylase [Lactobacillus coleohominis 101-4-CHN] gi|256715632|gb|EEU30607.1| MraW methylase [Lactobacillus coleohominis 101-4-CHN] Length = 313 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 119/310 (38%), Positives = 171/310 (55%), Gaps = 12/310 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76 DHV VLL + +A LN P +DAT G GG+S G ++ A D+D A+ QE Sbjct: 4 DHVTVLLHEAVAGLNVQPDGQYVDATLGGGGHSGLILSKLHGGHLYAFDQDRTAIEYNQE 63 Query: 77 TMRDYKEQ--FSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + DY + + + F LQ + + VDG+V+DLGVSS Q D G RGFS+Q Sbjct: 64 HLADYLARHQLTFIKDNFKNLQVDLNKLGVTKVDGIVYDLGVSSPQFDDGQRGFSYQHDA 123 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM+ +SA ++VNQ L +IL GEEK A IA AI + R+ P TT + Sbjct: 124 KLDMRMNQEQSLSAYEIVNQWPYDRLVKILYRYGEEKFAKSIARAIERHREERPITTTFE 183 Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I++ + + + HPA ++FQA+RI VN+E+ L L A + L GG + V++ Sbjct: 184 LVDVIKEAIPARARRHGGHPAKKTFQAIRIAVNDELGVLEASLEQAFEMLNVGGRISVIT 243 Query: 250 FHSLEDRLVKKFFASRS--GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 F SLEDRLVK F R+ V A +IP P F+ + +K + P+ +++A N R+ Sbjct: 244 FQSLEDRLVKTMFRERTTLKDVPAGLPVIPKEQQP-DFKLVNRKAIEPSPQELASNHRAH 302 Query: 308 SAKLRAGMRT 317 SA LR + Sbjct: 303 SAHLRVIEKV 312 >gi|326803777|ref|YP_004321595.1| S-adenosyl-methyltransferase MraW [Aerococcus urinae ACS-120-V-Col10a] gi|326650961|gb|AEA01144.1| S-adenosyl-methyltransferase MraW [Aerococcus urinae ACS-120-V-Col10a] Length = 318 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 116/323 (35%), Positives = 176/323 (54%), Gaps = 17/323 (5%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M+ H H+ VLL++ + LN +D T G GG++ + A D Sbjct: 1 MTETFH-----HITVLLKETVDDLNVKEDGSYVDCTLGGGGHTSYLLSKLSAKGRLYAFD 55 Query: 66 RDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120 +D A++ +E D Q +L A F+QL++ + +GV DG+++DLGVSS Q+D Sbjct: 56 QDIQAINHAKERFADAIAAGQLTLIHANFAQLEEQLAQRGVKQVDGILYDLGVSSPQLDD 115 Query: 121 GDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS+++ PLDMRM S ++A ++VN + DL RIL GEEK A IA I R Sbjct: 116 RERGFSYKQDAPLDMRMDQSQTLTAKEIVNDWSYVDLVRILKRYGEEKFAKAIARNIENR 175 Query: 180 RQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 RQ A T +L +I++ + ++ HPA RSFQA+RI VN+E+ + L A + Sbjct: 176 RQKAAITRTSELVEIIKEAIPAPARRKGGHPAKRSFQAIRIAVNDELGAIESSLSQALQL 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPT 296 +K G + +SF SLEDR+VK F S + + ++ S A F+ + KK + P+ Sbjct: 236 IKVEGRIAAISFQSLEDRIVKVMFKEASTVDNLPSQLPLLESQLPQAKFRLVNKKPIYPS 295 Query: 297 QEDVAFNRRSRSAKLRAGMRTVE 319 QE++ N R++SAKLR R E Sbjct: 296 QEELDKNSRAQSAKLRVIERVSE 318 >gi|332076775|gb|EGI87237.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae GA17545] Length = 316 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 106/319 (33%), Positives = 170/319 (53%), Gaps = 15/319 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M+ H HV VLL + I +L+ P + +DAT G G+S ++ A D Sbjct: 1 MTKEFH-----HVTVLLHETIDMLDVKPEGIYVDATLGGAGHSEYLLSKLSEKGHLYAFD 55 Query: 66 RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120 +D A+ Q+ + Y E+ + + F LQ + + GV DG+ +DLGVSS Q+D Sbjct: 56 QDQNAIDNAQKRLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQ 115 Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS++K PLDMRM+ ++A +VVN + DL RI GE+K + +IA I + Sbjct: 116 RERGFSYKKDAPLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQA 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R+ P +TT +L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A Sbjct: 176 REVKPIETTTELAEIIKLVKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDM 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L G + V++FHSLEDRL K+ F S + + + +++K ++P+ E Sbjct: 236 LALDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAE 295 Query: 299 DVAFNRRSRSAKLRAGMRT 317 ++ N RS SAKLR + Sbjct: 296 ELEANNRSHSAKLRVARKI 314 >gi|254518688|ref|ZP_05130744.1| S-adenosyl-methyltransferase MraW [Clostridium sp. 7_2_43FAA] gi|226912437|gb|EEH97638.1| S-adenosyl-methyltransferase MraW [Clostridium sp. 7_2_43FAA] Length = 310 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 112/308 (36%), Positives = 171/308 (55%), Gaps = 10/308 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 HV VLL + I LN + +D T G GG+S K S +I +D+D A+ Sbjct: 4 KHVSVLLNECIEGLNIKEDGIYVDGTLGGGGHSLEILKRLSKDGTLIGVDQDKDALKAAG 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E ++D+ + F + + + K +DG++ DLGVSS Q+D GDRGFS+ + P Sbjct: 64 ERLQDFA-NVKFVHSNFYNIDSVLNNLEIKKIDGMLMDLGVSSYQLDEGDRGFSYMQDAP 122 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ S +SA +V+N+ +++ RI+ GEEK A RIA IV+ R++ P +TT +L Sbjct: 123 LDMRMNRESSLSAYEVINEYEEEEIYRIIRDYGEEKFAKRIARFIVENRENKPIETTLEL 182 Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+ + + HPA R+FQA+RI VN+E+ L + + L GG + +++F Sbjct: 183 VEIIKAAIPAKARREGPHPAKRTFQAIRIEVNSELSILNKAIEDGVNRLNKGGRMAIITF 242 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK F + + I A + I++K + P++E+V N RSRSA Sbjct: 243 HSLEDRIVKLKFKELATSCTCPKEFPICVCGGKAKVKLISRKAIEPSKEEVEENPRSRSA 302 Query: 310 KLRAGMRT 317 KLR R Sbjct: 303 KLRVIERI 310 >gi|313114876|ref|ZP_07800375.1| S-adenosyl-methyltransferase MraW [Faecalibacterium cf. prausnitzii KLE1255] gi|310622826|gb|EFQ06282.1| S-adenosyl-methyltransferase MraW [Faecalibacterium cf. prausnitzii KLE1255] Length = 321 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 113/316 (35%), Positives = 171/316 (54%), Gaps = 12/316 (3%) Query: 11 SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-----KMGSNVIALD 65 +A +H+PVLL + + L+ P LD T G G+SR + G +I+LD Sbjct: 7 AAFDPASFEHIPVLLNECLEGLSIDPAGTYLDGTAGGAGHSRQIALRLDAEKGGRLISLD 66 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGD 122 +DP AV + + ++ Q F + G+D G + DLGVSS Q+D Sbjct: 67 QDPDAVQTARARLAGLPA--TVVQINFRYAGQALESLGIDKVNGALLDLGVSSHQLDDAA 124 Query: 123 RGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 RGFS++ PLDMRMS G +A+D+VN + ++L RIL GEE A +IA IV+ R++ Sbjct: 125 RGFSYRADAPLDMRMSQQGETAADLVNTESREELARILRDYGEEPFAWQIAGRIVEAREN 184 Query: 183 APFQTTQDLSSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 +P +TT L+ ++ + ++ + +P+ R+FQALRI VN+E++ L +GL + L Sbjct: 185 SPIETTLQLADIVASAMPPAERRKNKNPSRRTFQALRIAVNHELDALEEGLDTIFDHLAP 244 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDV 300 GG L V++FHSLEDRLVK F S + A + IT+K + +++ Sbjct: 245 GGRLCVITFHSLEDRLVKNKFRRWSTACTCPPEFPVCVCGGKAKAKLITRKPIEANSQEL 304 Query: 301 AFNRRSRSAKLRAGMR 316 NRRSRSA LR + Sbjct: 305 EENRRSRSAHLRVLEK 320 >gi|256850925|ref|ZP_05556314.1| MraW methylase [Lactobacillus jensenii 27-2-CHN] gi|260661139|ref|ZP_05862053.1| MraW methylase [Lactobacillus jensenii 115-3-CHN] gi|282934162|ref|ZP_06339440.1| S-adenosyl-methyltransferase MraW [Lactobacillus jensenii 208-1] gi|297205805|ref|ZP_06923200.1| S-adenosyl-methyltransferase MraW [Lactobacillus jensenii JV-V16] gi|256615987|gb|EEU21175.1| MraW methylase [Lactobacillus jensenii 27-2-CHN] gi|260548076|gb|EEX24052.1| MraW methylase [Lactobacillus jensenii 115-3-CHN] gi|281301776|gb|EFA94042.1| S-adenosyl-methyltransferase MraW [Lactobacillus jensenii 208-1] gi|297148931|gb|EFH29229.1| S-adenosyl-methyltransferase MraW [Lactobacillus jensenii JV-V16] Length = 317 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 108/314 (34%), Positives = 169/314 (53%), Gaps = 13/314 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSC 73 T H VLL + I LN + +DATFG GG++R + ++ D+D +A++ Sbjct: 3 TNFKHTSVLLRETIDNLNVKDEGLYVDATFGGGGHARYLLSKLNTGVLVGFDQDNYAINA 62 Query: 74 GQETMRDY-----KEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRG 124 ++ +Y + Q + FS L D + G+DG+ +DLGVSS Q D DRG Sbjct: 63 AKDNFSEYLSGNHQPQLIMVHDNFSHLTDNLNKLGIKDGIDGIYYDLGVSSPQFDQPDRG 122 Query: 125 FSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 FS++ LDMRM+ + A VVN + L +L G+EK + +IA IV+RRQ Sbjct: 123 FSYRFDARLDMRMNQEQELDAYQVVNSYSQSQLADVLYQYGDEKFSRQIARKIVQRRQQK 182 Query: 184 PFQTTQDLSSLIQKTVYFSKNN-RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 P +TT +L LI++ + +K HPA +SFQA+R+ VN+E++ L L+ A + L+ G Sbjct: 183 PIETTFELVELIKEAIPAAKRRTGGHPAKKSFQAIRVEVNHELDSLKASLQEAIELLRPG 242 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G + V++F S ED++VKK F S + I + + + +K ++ T ++A Sbjct: 243 GRISVITFQSHEDKIVKKIFKENSEVDVPRGIPIIPDNLKPKLKLVNRKPILATASELAN 302 Query: 303 NRRSRSAKLRAGMR 316 N RS SAKLR + Sbjct: 303 NNRSHSAKLRVAEK 316 >gi|148994362|ref|ZP_01823605.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae SP9-BS68] gi|147927293|gb|EDK78326.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae SP9-BS68] Length = 316 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 105/319 (32%), Positives = 169/319 (52%), Gaps = 15/319 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M+ H HV VLL + I +L+ P + +DAT G G+S ++ A D Sbjct: 1 MTKEFH-----HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFD 55 Query: 66 RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120 +D A+ Q+ + Y E+ + + F LQ + + GV DG+ +DLGVSS Q+D Sbjct: 56 QDQNAIDNAQQRLAPYIEKGMVTFIKDNFRHLQVRLREAGVQEIDGICYDLGVSSPQLDQ 115 Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS++K PLDMRM+ ++A +VVN + DL RI GE+K + +IA I + Sbjct: 116 RERGFSYKKDAPLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQA 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R P +TT +L+ +I+ + + HPA + FQA+RI VN+E+ + ++ + Sbjct: 176 RDVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQSMDM 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L G + V++FHSLEDRL K+ F S + + + +++K ++P+ E Sbjct: 236 LTLDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAE 295 Query: 299 DVAFNRRSRSAKLRAGMRT 317 ++ N RS SAKLR + Sbjct: 296 ELEANNRSHSAKLRVARKI 314 >gi|83942761|ref|ZP_00955222.1| S-adenosyl-methyltransferase MraW [Sulfitobacter sp. EE-36] gi|83846854|gb|EAP84730.1| S-adenosyl-methyltransferase MraW [Sulfitobacter sp. EE-36] Length = 330 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 148/332 (44%), Positives = 202/332 (60%), Gaps = 6/332 (1%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRD 67 MS H PVLL ++A + P G+ LD TFGAGGY+R G+ V+A+DRD Sbjct: 1 MSGPSDTPSAPHTPVLLRPLLAAVAPVSGR-WLDGTFGAGGYTRGLLDAGAAQVVAVDRD 59 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 P A Q DY ++ + + FS++ DY D +DG+V DLGVSSMQ+D +RGFSF Sbjct: 60 PLAFEMAQAWAGDYGDRIVMQRGVFSKMDDYAQD--LDGIVLDLGVSSMQLDLAERGFSF 117 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRMS G SA+D+VN+A + + IL GEE+ + RIA AIV+ R+ AP T Sbjct: 118 MRDGPLDMRMSQDGPSAADIVNEAEEEVIANILFQYGEERASRRIAKAIVRAREEAPITT 177 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T L+ L++ + SK + HPATRSFQALRI VNNE EL GL +AE+ALK GG L V Sbjct: 178 TLALAGLVESCLPRSKPGQSHPATRSFQALRIAVNNEYGELFNGLMAAERALKPGGQLAV 237 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPS-NAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+FHS+EDR+VK+F +R+G P A F+ + +K + P +++ N RS Sbjct: 238 VTFHSVEDRMVKRFLTARAGAGGNANRFAPEIEAPEPQFKILKRKAIGPDAQELEENPRS 297 Query: 307 RSAKLRAGMRTVERSIE-DDSFVHLPRLPTLS 337 RSAKLR +RT + D + +P + L+ Sbjct: 298 RSAKLRVAIRTDAPAGSIDAKALGMPMVRGLT 329 >gi|331701055|ref|YP_004398014.1| ribosomal RNA small subunit methyltransferase H [Lactobacillus buchneri NRRL B-30929] gi|329128398|gb|AEB72951.1| Ribosomal RNA small subunit methyltransferase H [Lactobacillus buchneri NRRL B-30929] Length = 315 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 110/312 (35%), Positives = 164/312 (52%), Gaps = 10/312 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73 + HV VLL + + LN P +DAT G GG++ + ++ + D+D A++ Sbjct: 2 SEFKHVTVLLNEAVKGLNINPDGTYVDATLGGGGHTTKILEQLTNGHLYSFDQDEEAIAY 61 Query: 74 GQETMRDY--KEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQ 128 ++ + +Y + +L F L+ + + G+DG+V+DLGVSS Q D RGFS++ Sbjct: 62 NRQHLAEYIEAGKLTLIHDNFRHLKSALQNVDVSGIDGIVYDLGVSSPQFDEAGRGFSYR 121 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 LDMRM + I A +VN+ + L RI GEEK A IA I R+ P T Sbjct: 122 FDARLDMRMDQDNPIDAWKIVNEWPYEKLVRIFYRYGEEKFAKSIARRIETVRREHPIDT 181 Query: 188 TQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T DL +I++ + + + + HPA + FQA+RI VN+E+ L L A L G + Sbjct: 182 TNDLVEVIKEGIPAAARRHGGHPAKKVFQAVRIAVNDELSALEDSLEQALDLLNVNGRIS 241 Query: 247 VVSFHSLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V++F SLEDRLVK F + S + I F+SIT+K +VPT+ ++ N R Sbjct: 242 VITFQSLEDRLVKTMFKEKTSLPELPPNLPIIPEGIKPKFKSITRKPIVPTEAELEENHR 301 Query: 306 SRSAKLRAGMRT 317 S SAKLR R Sbjct: 302 SHSAKLRIIERI 313 >gi|167745322|ref|ZP_02417449.1| hypothetical protein ANACAC_00013 [Anaerostipes caccae DSM 14662] gi|167655043|gb|EDR99172.1| hypothetical protein ANACAC_00013 [Anaerostipes caccae DSM 14662] Length = 311 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 101/307 (32%), Positives = 165/307 (53%), Gaps = 9/307 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 +H VLL++ I L P + +D T G GG++ I +D+D A+ Sbjct: 4 EHASVLLDETIRELKIKPDGIYVDGTLGGGGHAFHVLNRLSEKGRYIGIDQDEDAIRAST 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + ++++ ++ + + + + D G VDG++ DLGVSS Q+D DRGF++++ P Sbjct: 64 KRLAPFQDKVTIVRDNYVNMPKVLKDLGISRVDGILLDLGVSSFQLDEKDRGFTYREDVP 123 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM SA D+VN + ++L I+ GE+K A IA I R+ AP +TT L Sbjct: 124 LDMRMDQRQTFSARDIVNGYSEQELFHIIRDYGEDKFAKNIAKHIAAEREKAPIETTGQL 183 Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+ + + HPA R+FQA+RI N E+E L L + L G L +++F Sbjct: 184 IEVIKHAIPMKVRAVGGHPAKRTFQAIRIECNRELEVLKTSLDQMIELLNPEGRLCIITF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK+ F I + + + + IT+K ++PT+E++ N+R++S+ Sbjct: 244 HSLEDRIVKRAFRKNENPCTCPPNFPICTCGNESKGKVITRKPIIPTEEELMRNKRAKSS 303 Query: 310 KLRAGMR 316 KLR R Sbjct: 304 KLRVFER 310 >gi|269926721|ref|YP_003323344.1| S-adenosyl-methyltransferase MraW [Thermobaculum terrenum ATCC BAA-798] gi|269790381|gb|ACZ42522.1| S-adenosyl-methyltransferase MraW [Thermobaculum terrenum ATCC BAA-798] Length = 304 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 123/306 (40%), Positives = 184/306 (60%), Gaps = 11/306 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H VLL++ IALL+ P +DAT GAGG++ + V+ LD DP A+ Q Sbjct: 1 MHTSVLLDESIALLDIHPNGKYIDATLGAGGHAEKMLERSSPSGRVLGLDADPRAIELAQ 60 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + + ++ L F ++ + DGV+FDLG+SSMQ+D GFSF++ P Sbjct: 61 QRLGRFVGRYVLVHTNFRYIEQAATEHDFNPCDGVLFDLGISSMQVDAWAAGFSFRRDEP 120 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMR SG +A+D++ +++ ++L RI+ GEE ++ +IA AI R+ P TT L Sbjct: 121 LDMRFDPTSGKTAADIIRESSEQELARIIWEYGEEPKSRQIARAIKSSRE--PIITTVQL 178 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++ VY K +RIHPATR+FQALRI VN+E++ L +GL A + L+ GG L+V+SFH Sbjct: 179 VQAVES-VYKGKRSRIHPATRTFQALRIAVNDELDALQEGLAGALRVLRVGGRLVVISFH 237 Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK F RS + ++ + H + +T+K +VP++E+V N RSRSAK Sbjct: 238 SLEDRIVKHFMRERSKGCICPPEQLVCTCNHRPEIKVLTRKPIVPSEEEVKVNPRSRSAK 297 Query: 311 LRAGMR 316 LRA + Sbjct: 298 LRAAEK 303 >gi|262282191|ref|ZP_06059960.1| S-adenosyl-methyltransferase MraW [Streptococcus sp. 2_1_36FAA] gi|262262645|gb|EEY81342.1| S-adenosyl-methyltransferase MraW [Streptococcus sp. 2_1_36FAA] Length = 316 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 107/319 (33%), Positives = 168/319 (52%), Gaps = 15/319 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M++ H HV VLL + I L+ P V +DAT G G+S ++ A D Sbjct: 1 MTNEFH-----HVTVLLHETIDYLDVKPDGVYVDATLGGAGHSEYLLSKLSPKGHLYAFD 55 Query: 66 RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDC 120 +D A+ ++ + Y E+ + Q F L+ + GVD G+ +DLGVSS Q+D Sbjct: 56 QDATAIEHAKKRLAPYIEKGMVTFVQDNFRHLKLQLKKLGVDEIDGICYDLGVSSPQLDE 115 Query: 121 GDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS+++ PLDMRM+ + SA VVN + DL RI GE+K + +IA I + Sbjct: 116 RERGFSYKQDAPLDMRMNRHADFSAYQVVNDYDYHDLVRIFFKYGEDKFSKQIARKIEQA 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 RQ P +TT +L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A Sbjct: 176 RQIKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDM 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L G + V++FHSLEDRL K+ F S + + + I++K ++P+ E Sbjct: 236 LAVDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPDDLKPKLELISRKPILPSAE 295 Query: 299 DVAFNRRSRSAKLRAGMRT 317 ++ N R+ SAKLR + Sbjct: 296 ELELNNRAHSAKLRVAKKV 314 >gi|165975468|ref|YP_001651061.1| S-adenosyl-methyltransferase MraW [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|263446591|sp|B0BRG9|RSMH_ACTPJ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|165875569|gb|ABY68617.1| S-adenosyl-methyltransferase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 313 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 118/316 (37%), Positives = 175/316 (55%), Gaps = 16/316 (5%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69 ++ T+ H+ VLL + + L P + +D TFG GG+SR +IA DRDP Sbjct: 1 MNDTVHKHITVLLHEAVDGLAIKPNGIYIDGTFGRGGHSRLILSKLSEQGRLIATDRDPR 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGF 125 A++ +F + FS + D G +DG++ DLGVSS Q+D +RGF Sbjct: 61 AIAEANTI---DDTRFQIVHTAFSAIPDVCEQLGLTGKIDGILLDLGVSSPQLDDAERGF 117 Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ--S 182 SF + GPLDMRM + G+SA++ + Q + DL +L GEE+ A RIA A+V + + Sbjct: 118 SFMRDGPLDMRMDTTKGLSAAEWLAQVSADDLAWVLKTFGEERFAKRIAQAVVSYNKSVT 177 Query: 183 APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 T L+ +I V F K+ HPATRSFQA+RIF+N+E++EL + L+SA L Sbjct: 178 DKISRTLQLAQIIADAVPF-KDKHKHPATRSFQAIRIFINSELDELEKALQSALSVLAPE 236 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300 G L ++SFHSLEDR+VK+F S V ++ S + + I K ++P++ ++ Sbjct: 237 GRLSIISFHSLEDRMVKQFMKKNSKGMDVPKGLPILESELNKNIPLKIIGKAIMPSEAEI 296 Query: 301 AFNRRSRSAKLRAGMR 316 N RSRSA LR + Sbjct: 297 EANPRSRSAVLRIAEK 312 >gi|284048645|ref|YP_003398984.1| S-adenosyl-methyltransferase MraW [Acidaminococcus fermentans DSM 20731] gi|283952866|gb|ADB47669.1| S-adenosyl-methyltransferase MraW [Acidaminococcus fermentans DSM 20731] Length = 309 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 104/307 (33%), Positives = 165/307 (53%), Gaps = 11/307 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76 H VLLE+ + + P + +D T G GG+S +I +D+D A++ E Sbjct: 5 HKSVLLEESVQWVVTDPKGIYVDCTLGGGGHSHRITELLDPEGLLIGIDQDEDAIAAATE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++D + Q + F L + G VDG++FDLGVSS Q+D +RGFS+ GPL Sbjct: 65 RLKDARCQVKIVHNNFRNLDQILDQLGIPQVDGILFDLGVSSYQLDTPERGFSYMHDGPL 124 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM ++A VVN+ DL ++ GEE+ A RIA IV R+ P +TT +L Sbjct: 125 DMRMDQEASLTAEQVVNRYKEDDLAGLIYKYGEERWAKRIAQFIVAARKEHPIRTTGELV 184 Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + ++ + HPA R+FQA+RI VN+E++ L + +A LK+GG + V++FH Sbjct: 185 HIIKAAIPKGARQDGPHPAKRTFQAIRIEVNDELKILDATMEAAVHHLKSGGHIGVITFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR++K+ F + + + + K P + ++A N R+RSA+ Sbjct: 245 SLEDRIIKQAFKRLQRGCICPPELPVCVCGRKPELKKL--KEFTPGEAELAENPRARSAR 302 Query: 311 LRAGMRT 317 LR ++ Sbjct: 303 LRGAVKI 309 >gi|99081855|ref|YP_614009.1| methyltransferase [Ruegeria sp. TM1040] gi|123378785|sp|Q1GF19|RSMH_SILST RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|99038135|gb|ABF64747.1| methyltransferase [Ruegeria sp. TM1040] Length = 329 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 150/330 (45%), Positives = 205/330 (62%), Gaps = 6/330 (1%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRD 67 M+ G H+PVLL+ ++A + P G+ LD TFGAGGY++ G++ VI +DRD Sbjct: 1 MTDRTAAPSGPHIPVLLKPLLAAVAPVTGR-WLDGTFGAGGYTKGLLAAGADQVIGVDRD 59 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 P A Q +Y ++ L Q FS++ +Y + +DGVV DLGVSSMQ+D +RGFSF Sbjct: 60 PLAFEMAQPWAAEYGDRLVLQQGVFSRMDEYAQE--LDGVVLDLGVSSMQLDLAERGFSF 117 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 K GPLDMRMS G SA+D+V + + L +L GEE+ + RIA AIVK R P T Sbjct: 118 MKEGPLDMRMSQDGPSAADLVAELSEVQLADVLYSFGEERASRRIAKAIVKERAQEPITT 177 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T L+ +I+ + K + HPATRSFQALRI VN E EEL GL +AE+ALK GGLL V Sbjct: 178 TLRLAEIIEGCLPRPKPGQSHPATRSFQALRIAVNGEYEELMGGLLAAERALKPGGLLAV 237 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPS-NAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+FHS+EDR+VK+FF R+ K P+ P+ F+ +T+K V P ++++A N RS Sbjct: 238 VTFHSVEDRMVKRFFQHRANKTGNANRYAPAMEEQPSQFELVTRKAVGPDKDELAQNPRS 297 Query: 307 RSAKLRAGMRTVERSIEDDSF-VHLPRLPT 335 RSA LR G RT +E + + +P+L Sbjct: 298 RSALLRVGRRTDAAPVEITAKELSMPQLKE 327 >gi|237738955|ref|ZP_04569436.1| S-adenosyl-methyltransferase mraW [Fusobacterium sp. 2_1_31] gi|229423555|gb|EEO38602.1| S-adenosyl-methyltransferase mraW [Fusobacterium sp. 2_1_31] Length = 320 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 105/324 (32%), Positives = 175/324 (54%), Gaps = 13/324 (4%) Query: 4 KSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--- 60 K+ M + H+PVL + + L P V +D T G G +S + S+ Sbjct: 2 KNGDFMEKIGND---YHIPVLYYETLDNLVINPDGVYIDCTLGGGSHSEGILERLSDKGL 58 Query: 61 VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQ 117 ++++D+D A+ ++ + Y ++ + + F + G VDG++ D+GVSS Q Sbjct: 59 LLSIDQDSNAIEYSKKRLEKYASKWKVLKGNFENIDTLAYMAGIDKVDGILMDIGVSSKQ 118 Query: 118 IDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 +D +RGFS++ LDMRM+ +SA DVVN + ++L+RI+ GEE+ A +IA I Sbjct: 119 LDEAERGFSYRYDVKLDMRMNTDQKLSAYDVVNTYSEEELSRIIFEYGEERFARKIAKLI 178 Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236 + R+ P TT +L +LI++ + HPA ++FQA+RI VN E+E L + A Sbjct: 179 CENRKIKPITTTFELVALIRRAYP--ERASKHPAKKTFQAIRIEVNRELEVLENAMSKAV 236 Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVP 295 + LK GG L +++FHSLEDR+VK F + + I F+ IT+K ++P Sbjct: 237 ELLKVGGRLGIITFHSLEDRIVKNKFKDLATACKCPKDIPICMCGGVKKFEIITRKPIIP 296 Query: 296 TQEDVAFNRRSRSAKLRAGMRTVE 319 ++++ N R+ S+KLR R ++ Sbjct: 297 VEDELKNNNRAHSSKLRILERILD 320 >gi|303250489|ref|ZP_07336686.1| S-adenosyl-methyltransferase MraW [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303251832|ref|ZP_07338003.1| S-adenosyl-methyltransferase MraW [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307249133|ref|ZP_07531140.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307249209|ref|ZP_07531206.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307251531|ref|ZP_07533438.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307260461|ref|ZP_07542156.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|302649262|gb|EFL79447.1| S-adenosyl-methyltransferase MraW [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302650477|gb|EFL80636.1| S-adenosyl-methyltransferase MraW [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306854421|gb|EFM86617.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306858733|gb|EFM90792.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306860995|gb|EFM93001.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306869864|gb|EFN01646.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 313 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 120/316 (37%), Positives = 176/316 (55%), Gaps = 16/316 (5%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69 ++ T+ H+ VLL + + L P + +D TFG GG+SR +IA DRDP Sbjct: 1 MNDTVHKHITVLLHEAVDGLAIKPNGIYIDGTFGRGGHSRLILSKLSEQGRLIATDRDPR 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGF 125 A++ +F + FS + D G +DG++ DLGVSS Q+D +RGF Sbjct: 61 AIAEANTI---DDTRFQIVHTAFSAIPDVCEQLGLTGKIDGILLDLGVSSPQLDDAERGF 117 Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA- 183 SF + GPLDMRM + G+SA++ + Q + DL +L GEE+ A RIA A+V +SA Sbjct: 118 SFMRDGPLDMRMDTTKGLSAAEWLAQVSADDLAWVLKTFGEERFAKRIAQAVVSYNKSAT 177 Query: 184 -PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 T L+ +I V F K+ HPATRSFQA+RIF+N+E++EL + L+SA L Sbjct: 178 DKISRTLQLAQIIADAVPF-KDKHKHPATRSFQAIRIFINSELDELEKALQSALSVLAPE 236 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300 G L ++SFHSLEDR+VK+F S V ++ S + + I K ++P++ ++ Sbjct: 237 GRLSIISFHSLEDRMVKQFMKKNSKGMDVPKGLPILESELNKNIPLKIIGKAIMPSEAEI 296 Query: 301 AFNRRSRSAKLRAGMR 316 N RSRSA LR + Sbjct: 297 EANPRSRSAVLRIAEK 312 >gi|25010349|ref|NP_734744.1| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae NEM316] gi|30173049|sp|Q8E782|RSMH_STRA3 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|23094701|emb|CAD45920.1| unknown [Streptococcus agalactiae NEM316] gi|319744247|gb|EFV96612.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Streptococcus agalactiae ATCC 13813] Length = 315 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 102/320 (31%), Positives = 167/320 (52%), Gaps = 15/320 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 M++ H H+ VLL + + +L+ P + +DAT G G+S ++ A D Sbjct: 1 MTNDFH-----HITVLLHETVDMLDIKPDGIYVDATLGGAGHSEYLLSQLGPDGHLYAFD 55 Query: 66 RDPFAVSCGQETMRDYKE--QFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120 +D A+ ++ Y + Q + + F L + GV +G+ +DLGVSS Q+D Sbjct: 56 QDQKAIDNAHIRLKKYVDTGQVTFIKDNFRNLSSNLKALGVSEINGICYDLGVSSPQLDE 115 Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS+++ PLDMRM+ ++A DVVN + DL RI GE+K + +IA I + Sbjct: 116 RERGFSYKQDAPLDMRMNREQSLTAYDVVNTYSYHDLVRIFFKYGEDKFSKQIARKIEQV 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R P TT +L+ +I+ + + + HPA + FQA+RI VN+E+ + ++ A Sbjct: 176 RAEKPISTTTELAEIIKSSKSAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDL 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L G + V++FHSLEDRL K+ F S + + + + +K ++P+QE Sbjct: 236 LAVDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLQPKMELVNRKPILPSQE 295 Query: 299 DVAFNRRSRSAKLRAGMRTV 318 ++ N R+ SAKLR R Sbjct: 296 ELEANNRAHSAKLRVARRIR 315 >gi|260881846|ref|ZP_05405354.2| S-adenosyl-methyltransferase MraW [Mitsuokella multacida DSM 20544] gi|260847818|gb|EEX67825.1| S-adenosyl-methyltransferase MraW [Mitsuokella multacida DSM 20544] Length = 330 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 111/321 (34%), Positives = 169/321 (52%), Gaps = 11/321 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H+ V+LE+ + L + +D T G G+S ++ +I +D+D A+ + Sbjct: 9 HHISVMLEETVKGLVTNKEGIYVDCTLGGAGHSHRIAELLSPKGRIIGIDQDEEAIEAAK 68 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E ++D K + + + FS L++ + +G VDGVVFDLGVSS QID +RGFS+ P Sbjct: 69 ERLKDVKCRVDIVHSNFSHLEEILEAQGAPLVDGVVFDLGVSSHQIDTAERGFSYMHDAP 128 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM SA DVVN + K+L RI GEE+ RIA IVK R P + T +L Sbjct: 129 LDMRMDPEAKFSAYDVVNTYSEKELDRIFHDYGEERWGRRIAQFIVKERMKKPIERTGEL 188 Query: 192 SSLIQKTVYFSKNNR--IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 +I K V + HPA R FQA+RI VN+E+ L + R+A LK GG + +++ Sbjct: 189 VDIICKAVPKAVRQAANGHPAKRIFQAIRIEVNDELGILEKAFRTAVHHLKPGGRIAIIT 248 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+ K+ + + + H + + K T +++A N RS+S Sbjct: 249 FHSLEDRIAKQTLKEMARGCICPPELPVCVCHHKPEIRLL-GKPKQATADELAHNSRSKS 307 Query: 309 AKLRAGMRTVERSIEDDSFVH 329 AKLR + + ++++ Sbjct: 308 AKLRIAEKLATDNNQEETRKG 328 >gi|262066020|ref|ZP_06025632.1| S-adenosyl-methyltransferase MraW [Fusobacterium periodonticum ATCC 33693] gi|291380270|gb|EFE87788.1| S-adenosyl-methyltransferase MraW [Fusobacterium periodonticum ATCC 33693] Length = 314 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 103/308 (33%), Positives = 172/308 (55%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+PVL + + L P V +D T G G +S + S+ ++++D+D A+ ++ Sbjct: 9 HIPVLYYETLDNLVINPDGVYIDCTLGGGSHSEGILERLSDKGLLLSIDQDSNAIEYSKK 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + Y ++ + + F + G VDG++ D+GVSS Q+D +RGFS++ L Sbjct: 69 RLEKYASKWKVLKGNFENIDTLAYMAGIDKVDGILMDIGVSSKQLDEAERGFSYRYDVKL 128 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +SA DVVN + ++L+RI+ GEE+ A +IA I + R++ P TT +L Sbjct: 129 DMRMNTEQKLSAYDVVNTYSEEELSRIIFEYGEERFARKIAKLICENRKTKPITTTFELV 188 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +LI++ + HPA ++FQA+RI VN E+E L + A + LK GG L +++FHS Sbjct: 189 ALIRRAYP--ERASKHPAKKTFQAIRIEVNRELEVLENAMSKAVELLKVGGRLGIITFHS 246 Query: 253 LEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK F + + I F+ IT+K ++P ++++ N R+ S+KL Sbjct: 247 LEDRIVKNKFKDLATACKCPKDIPICICGGVKKFEVITRKPIIPVEDELKNNNRAHSSKL 306 Query: 312 RAGMRTVE 319 R R ++ Sbjct: 307 RILERILD 314 >gi|83954000|ref|ZP_00962721.1| S-adenosyl-methyltransferase MraW [Sulfitobacter sp. NAS-14.1] gi|83841945|gb|EAP81114.1| S-adenosyl-methyltransferase MraW [Sulfitobacter sp. NAS-14.1] Length = 333 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 148/332 (44%), Positives = 202/332 (60%), Gaps = 6/332 (1%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRD 67 MS H PVLL ++A + P G+ LD TFGAGGY+R G+ V+A+DRD Sbjct: 4 MSGPSDTPSAPHTPVLLRPLLAAVAPVSGR-WLDGTFGAGGYTRGLLDAGAAQVVAVDRD 62 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 P A Q DY ++ + + FS++ DY D +DG+V DLGVSSMQ+D +RGFSF Sbjct: 63 PLAFEMAQAWAGDYGDRIVMQRGVFSKMDDYAQD--LDGIVLDLGVSSMQLDLAERGFSF 120 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRMS G SA+D+VN+A + + IL GEE+ + RIA AIV+ R+ AP T Sbjct: 121 MRDGPLDMRMSQDGPSAADIVNEAEEEVIANILFQYGEERASRRIAKAIVRAREEAPITT 180 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T L+ L++ + SK + HPATRSFQALRI VNNE EL GL +AE+ALK GG L V Sbjct: 181 TLALAGLVEGCLPRSKPGQSHPATRSFQALRIAVNNEYGELFNGLMAAERALKPGGQLAV 240 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPS-NAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+FHS+EDR+VK+F +R+G P A F+ + +K + P +++ N RS Sbjct: 241 VTFHSVEDRMVKRFLTARAGAGGNANRFAPEIEAPEPQFKILKRKAIGPDAQELEENPRS 300 Query: 307 RSAKLRAGMRTVERSIE-DDSFVHLPRLPTLS 337 RSAKLR +RT + D + +P + L+ Sbjct: 301 RSAKLRVAIRTDAPAGSIDAKALGMPMVRGLT 332 >gi|57866678|ref|YP_188327.1| S-adenosyl-methyltransferase MraW [Staphylococcus epidermidis RP62A] gi|242242461|ref|ZP_04796906.1| S-adenosyl-methyltransferase MraW [Staphylococcus epidermidis W23144] gi|68565427|sp|Q5HQ13|RSMH_STAEQ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|57637336|gb|AAW54124.1| S-adenosyl-methyltransferase MraW [Staphylococcus epidermidis RP62A] gi|242234035|gb|EES36347.1| S-adenosyl-methyltransferase MraW [Staphylococcus epidermidis W23144] gi|319401527|gb|EFV89737.1| S-adenosyl-methyltransferase MraW [Staphylococcus epidermidis FRI909] Length = 311 Score = 374 bits (962), Expect = e-102, Method: Composition-based stats. Identities = 101/308 (32%), Positives = 162/308 (52%), Gaps = 9/308 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + HV V+L + I LN V +D T G G++ +IA+D+D A+ Sbjct: 1 MFHHVSVMLNETIDYLNIKEDGVYVDCTLGGAGHALYLLNQLNDKGRLIAIDQDLTAIEN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E ++++ + + F +L + + + VDG+ +DLGVSS Q+D +RGFS+ Sbjct: 61 AKEVLKEHLHKVTFVHNNFRELTNILNELEIDKVDGIYYDLGVSSPQLDVPERGFSYHND 120 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM + +SA +VVNQ + + L +I GEEK + +IA I R+ P +TT Sbjct: 121 AKLDMRMDQTQSLSAYEVVNQWSYEALVKIFYRYGEEKFSKQIARRIEAHREQQPIETTL 180 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I++ + + HPA R FQA+RI VN+E+ + A + +K GG + V+ Sbjct: 181 ELVDVIKEGIPAKARRKGGHPAKRVFQAIRIAVNDELSAFEDSVEQAIECVKVGGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F R + A+ + + +K + T +D+ N R+R Sbjct: 241 TFHSLEDRLCKQIFQEFEKGPDVPRGLPVIPEAYTPKLKRVNRKPITATDDDLNENNRAR 300 Query: 308 SAKLRAGM 315 SAKLR Sbjct: 301 SAKLRVAE 308 >gi|329117643|ref|ZP_08246360.1| S-adenosyl-methyltransferase MraW [Streptococcus parauberis NCFD 2020] gi|326908048|gb|EGE54962.1| S-adenosyl-methyltransferase MraW [Streptococcus parauberis NCFD 2020] Length = 316 Score = 374 bits (962), Expect = e-102, Method: Composition-based stats. Identities = 104/320 (32%), Positives = 167/320 (52%), Gaps = 15/320 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M+ H H+ VLL + + +LN P + +DAT G G+S ++ D Sbjct: 1 MTKEFH-----HITVLLNETVDMLNVKPDGIYVDATLGGAGHSAYLLSQLNENGHLYCFD 55 Query: 66 RDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120 +D A+ Q ++ + K Q + + F L+ + GV DG+++DLGVSS Q+D Sbjct: 56 QDQKAIDNAQVFLKPFIDKGQVTFIKDNFRNLKSRLASLGVTEIDGILYDLGVSSPQLDE 115 Query: 121 GDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS+++ PLDMRM ++A VVN DL RI GE+K + +IA I + Sbjct: 116 RERGFSYRQDAPLDMRMDTEAELTAYQVVNHYAFNDLVRIFFRYGEDKFSKQIARKIEQA 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R+ P +TT +L+ LI+ + + HPA + FQA+RI VN+E+ + ++ A Sbjct: 176 REIKPIETTAELAELIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAAEESIQQAMDI 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L G + V++FHSLEDRL K+ F S + I F+ +++K ++P+ E Sbjct: 236 LALDGRISVITFHSLEDRLTKQLFKEASTVDVPKNIPIIPEHLQPKFELVSRKPILPSLE 295 Query: 299 DVAFNRRSRSAKLRAGMRTV 318 ++ N R+ SAKLR + Sbjct: 296 ELEANNRAHSAKLRVARKIR 315 >gi|168486616|ref|ZP_02711124.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae CDC1087-00] gi|168490752|ref|ZP_02714895.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae CDC0288-04] gi|183570380|gb|EDT90908.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae CDC1087-00] gi|183574822|gb|EDT95350.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae CDC0288-04] gi|301801259|emb|CBW33934.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae INV200] gi|327390750|gb|EGE89090.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae GA04375] Length = 316 Score = 374 bits (962), Expect = e-102, Method: Composition-based stats. Identities = 106/319 (33%), Positives = 170/319 (53%), Gaps = 15/319 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M+ H HV VLL + I +L+ P + +DAT G G+S ++ A D Sbjct: 1 MTKEFH-----HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFD 55 Query: 66 RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120 +D A+ Q+ + Y E+ + + F LQ + + GV DG+ +DLGVSS Q+D Sbjct: 56 QDQNAIDNAQKRLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQ 115 Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS++K PLDMRM+ ++A +VVN + DL RI GE+K + +IA I + Sbjct: 116 RERGFSYKKDAPLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQA 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R+ P +TT +L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A Sbjct: 176 REVKPIETTTELAEIIKLVKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDM 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L G + V++FHSLEDRL K+ F S + + + +++K ++P+ E Sbjct: 236 LALDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAE 295 Query: 299 DVAFNRRSRSAKLRAGMRT 317 ++ N RS SAKLR + Sbjct: 296 ELEANNRSHSAKLRVVRKI 314 >gi|149001556|ref|ZP_01826529.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae SP14-BS69] gi|149006085|ref|ZP_01829814.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae SP18-BS74] gi|237649375|ref|ZP_04523627.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae CCRI 1974] gi|237821592|ref|ZP_04597437.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae CCRI 1974M2] gi|147760014|gb|EDK67003.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae SP14-BS69] gi|147762441|gb|EDK69402.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae SP18-BS74] Length = 316 Score = 374 bits (962), Expect = e-102, Method: Composition-based stats. Identities = 106/319 (33%), Positives = 171/319 (53%), Gaps = 15/319 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M+ H HV VLL + I +L+ P + +DAT G G+S ++ A D Sbjct: 1 MTKEFH-----HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFD 55 Query: 66 RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120 +D A+ Q+ + Y E+ + + F LQ + + GV DG+ +DLGVSS Q+D Sbjct: 56 QDQNAIDNAQKRLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQ 115 Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS++K PLDMRM+ ++A +VVN + +DL RI GE+K + +IA I + Sbjct: 116 RERGFSYKKDAPLDMRMNQDASLTAYEVVNNYDYRDLVRIFFKYGEDKFSKQIARKIEQA 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R+ P +TT +L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A Sbjct: 176 REVKPIETTTELAEIIKLVKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDM 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L G + V++FHSLEDRL K+ F S + + + +++K ++P+ E Sbjct: 236 LALDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAE 295 Query: 299 DVAFNRRSRSAKLRAGMRT 317 ++ N RS SAKLR + Sbjct: 296 ELEANNRSHSAKLRVVRKI 314 >gi|302391523|ref|YP_003827343.1| S-adenosyl-methyltransferase MraW [Acetohalobium arabaticum DSM 5501] gi|302203600|gb|ADL12278.1| S-adenosyl-methyltransferase MraW [Acetohalobium arabaticum DSM 5501] Length = 311 Score = 374 bits (962), Expect = e-102, Method: Composition-based stats. Identities = 114/307 (37%), Positives = 173/307 (56%), Gaps = 9/307 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQ 75 +H+PVLL + I LL+ + +D T G GG++ +I +D+D A+ + Sbjct: 4 EHIPVLLTETIELLDCKEDGIYVDCTVGGGGHAVEIADKLTTDGTLIGIDQDLAAIEAAK 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E++ + + + L + + + + G VDG++FDLG SS QID RGFS+Q P Sbjct: 64 ESLSNAECKVELVRDNYKNIDRVLNRFGIDSVDGLLFDLGFSSHQIDTAQRGFSYQYEAP 123 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + +A+D+VN + +LT I+ GEEK ASRIA IV+ RQ PF+ T +L Sbjct: 124 LDMRMDQRASRTAADLVNDLSQSELTDIIAEYGEEKWASRIAEFIVRYRQDKPFKLTTEL 183 Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 I+ + ++ + HPA R+FQALRI VNNE+E L + L LK+GG + ++F Sbjct: 184 VETIKAAIPAGARRSGPHPAKRTFQALRIAVNNELEVLTKTLDKIVPLLKSGGRMAFITF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK F + + + + A + ITKK + Q+++ N R+RSA Sbjct: 244 HSLEDRIVKHKFKELAQDCICPPDFPVCACDEEAEVEIITKKPITAQQKEIDDNPRARSA 303 Query: 310 KLRAGMR 316 KLRA + Sbjct: 304 KLRAAEK 310 >gi|70726737|ref|YP_253651.1| S-adenosyl-methyltransferase MraW [Staphylococcus haemolyticus JCSC1435] gi|88909220|sp|Q4L5N0|RSMH_STAHJ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|68447461|dbj|BAE05045.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 311 Score = 374 bits (962), Expect = e-102, Method: Composition-based stats. Identities = 101/308 (32%), Positives = 162/308 (52%), Gaps = 9/308 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H+ V+L + I L+ + +D T G G++ +IA+D+D A+ Sbjct: 1 MFHHISVMLNETIDYLDIKEDGIYVDCTLGGAGHALYLLNQLNDDGRLIAIDQDTTALDN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E ++D+ + + + F +L D + + + VDG+ +DLGVSS Q+D +RGFS+ Sbjct: 61 AKEVLKDHLHKVTFVHSNFRELTDILKNLNIEKVDGIYYDLGVSSPQLDVPERGFSYHHD 120 Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM + +SA +VVNQ + L +I GEEK + +IA I R+ P +TT Sbjct: 121 AKLDMRMDQTQQLSAYEVVNQWPYEALVKIFYRYGEEKFSKQIARRIETHREHQPIETTL 180 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I++ + + HPA R FQA+RI VN+E+ + A + +K GG + V+ Sbjct: 181 ELVDIIKEGIPAKARRKGGHPAKRVFQAIRIAVNDELSAFEDSIEQAIELVKVGGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F R I A+ + + +K + T D+ N R+R Sbjct: 241 TFHSLEDRLCKQMFQEYEKGPDVPRGLPIIPEAYTPKLKRVNRKPITATDTDLDENNRAR 300 Query: 308 SAKLRAGM 315 SAKLR Sbjct: 301 SAKLRVAE 308 >gi|307256031|ref|ZP_07537819.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306865453|gb|EFM97348.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 313 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 120/316 (37%), Positives = 175/316 (55%), Gaps = 16/316 (5%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69 ++ T+ H+ VLL + + L P + +D TFG GG+SR +IA DRDP Sbjct: 1 MNDTVHKHITVLLHEAVDGLAIKPNGIYIDGTFGRGGHSRLILSKLSEQGRLIATDRDPR 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGF 125 A++ +F + FS + D G +DG++ DLGVSS Q+D +RGF Sbjct: 61 AIAEANTI---DDTRFQIVHTAFSAIPDVCEQLGLTGKIDGILLDLGVSSPQLDDAERGF 117 Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA- 183 SF + GPLDMRM + G+SA++ + Q + DL +L GEE+ A RIA A+V +SA Sbjct: 118 SFMRDGPLDMRMDTTKGLSAAEWLAQVSADDLAWVLKTFGEERFAKRIAQAVVSYNKSAT 177 Query: 184 -PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 T L+ +I V F K+ HPATRSFQA+RIF+N+E++EL + L+SA L Sbjct: 178 DKISRTLQLAQIIADAVPF-KDKHKHPATRSFQAIRIFINSELDELEKALQSALSVLAPE 236 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300 G L ++SFHSLEDR+VK+F S V + S + + I K ++P++ ++ Sbjct: 237 GRLSIISFHSLEDRMVKQFMKKNSKGMGVPKGLPIFESELNKNIPLKIIGKAIMPSEAEI 296 Query: 301 AFNRRSRSAKLRAGMR 316 N RSRSA LR + Sbjct: 297 EANPRSRSAVLRIAEK 312 >gi|325288822|ref|YP_004265003.1| Ribosomal RNA small subunit methyltransferase H [Syntrophobotulus glycolicus DSM 8271] gi|324964223|gb|ADY55002.1| Ribosomal RNA small subunit methyltransferase H [Syntrophobotulus glycolicus DSM 8271] Length = 310 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 115/308 (37%), Positives = 174/308 (56%), Gaps = 10/308 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 +H VLL++ + + +D TFG GG+SR + S+ +IA D+D A + Sbjct: 4 EHTSVLLKETVDSVLTKADGTYVDCTFGGGGHSRLLLEKLSDQAKLIAFDQDEKAYLNAR 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 ++ F+ F +++ + +G V G++FDLGVSS Q+D +RGFS++ P Sbjct: 64 CRFAG-DKRVIFFRRNFVHMENTLDTEGLLPVTGIMFDLGVSSPQLDEAERGFSYRHDAP 122 Query: 133 LDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S SA+++VN + +LTRI+ GEEK ASRI+ IV+ R+ +TT L Sbjct: 123 LDMRMDRSAEFSAAELVNGWDEAELTRIIRAYGEEKWASRISKFIVEARKEQEIKTTGRL 182 Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+ V ++ HPA R+FQALRI VN E++ LA+ L A + L +GG L V++F Sbjct: 183 VEIIKAAVPAGARKEGPHPAKRTFQALRIAVNRELDVLAEALDQALRCLDSGGRLAVITF 242 Query: 251 HSLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR VK+ G+ + + A + IT+K V+P+ E++ N RSRSA Sbjct: 243 HSLEDRTVKEKILEWLGRCTCPQGFPVCTCGARAQVKQITRKPVIPSNEEIENNPRSRSA 302 Query: 310 KLRAGMRT 317 KLR + Sbjct: 303 KLRVVEKI 310 >gi|91205355|ref|YP_537710.1| S-adenosyl-methyltransferase MraW [Rickettsia bellii RML369-C] gi|122425755|sp|Q1RJ43|RSMH_RICBR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|91068899|gb|ABE04621.1| S-adenosyl-methyltransferase MraW [Rickettsia bellii RML369-C] Length = 305 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 127/304 (41%), Positives = 183/304 (60%), Gaps = 5/304 (1%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQE 76 H+PV+L +++ L P G+ LD TFGAGGYS++ + V ALDRDP + +E Sbjct: 3 QPHIPVMLNEMLKFLAPKAGESYLDCTFGAGGYSKALLENCDCYVTALDRDPNVIKKAEE 62 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 +YK++F + F + K DG+V DLGVSSMQ+D DRGFSF GPLDMR Sbjct: 63 IKHNYKDRFDFVETNFGNCFAKLESKKFDGIVLDLGVSSMQLDIPDRGFSFLHDGPLDMR 122 Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 MS G+SA + +N A KDL ++ G+E + RIA IV+ R++A +T L+ +++ Sbjct: 123 MSGQGLSAEEFINTAEEKDLADVIYKYGDETFSRRIAKKIVEVRKAARIDSTGKLADIVR 182 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 + F K +I PAT++FQA+RI++NNE+ EL Q L + + LK G L+VVSFHSLEDR Sbjct: 183 SCIGFRK-GKIDPATKTFQAIRIYINNELGELEQFLANVKNILKKDGRLVVVSFHSLEDR 241 Query: 257 LVKKFFASRSGKVMAVRHMIPSN---AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 +VK FF S K +A + + IT K +P+ ++++ N R+RSAKLRA Sbjct: 242 IVKNFFKENSEKPVARSKYAKEDIMLNPDKWLKIITNKAEIPSDKEISLNVRARSAKLRA 301 Query: 314 GMRT 317 + Sbjct: 302 AKKI 305 >gi|163868721|ref|YP_001609933.1| S-adenosyl-methyltransferase MraW [Bartonella tribocorum CIP 105476] gi|263445963|sp|A9IWB6|RSMH_BART1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|161018380|emb|CAK01938.1| S-adenosyl-methyltransferase [Bartonella tribocorum CIP 105476] Length = 332 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 168/322 (52%), Positives = 215/322 (66%), Gaps = 3/322 (0%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+PVLL+ V+A L P G ++D TFGAGGY+R+ K G+ VIALDRDP A++ GQ + Sbjct: 11 HIPVLLQPVLAGLMPLVGAKVIDGTFGAGGYTRALLKAGAQVIALDRDPHAIAAGQSLVD 70 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 ++ + L FSQL V + VD V+ D+GVSSMQ+D +RGFSFQK GPLDMRM+ Sbjct: 71 EFFPRLRLVHMEFSQLDRVVEE-KVDAVILDIGVSSMQLDEAERGFSFQKDGPLDMRMAQ 129 Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199 +G SASDVVN KDL RI ILGEE+ A RIA I KRR PF T DL+ I+ V Sbjct: 130 TGFSASDVVNHLKAKDLARIFKILGEERYAGRIARMIEKRRAVQPFLRTGDLAYAIEALV 189 Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259 +RIHPATR FQALRI+VN+EI ELA+GL +AE+ LKAGG L VVSFHSLEDR+VK Sbjct: 190 GRKPGDRIHPATRVFQALRIYVNDEIGELARGLFAAERVLKAGGRLGVVSFHSLEDRMVK 249 Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319 +FF SRSG+ M RH+ PA F + K + +E++ N RSRSA+LR G+RT Sbjct: 250 RFFVSRSGEGMRSRHLPEIKHSPATFFPLFKGGITANKEELQQNPRSRSARLRMGVRTNA 309 Query: 320 RSIEDDSFVHLPRLPTLSQFRG 341 ++ +D + L L ++ F G Sbjct: 310 EALAED--MKLFGLAEIASFEG 329 >gi|110634365|ref|YP_674573.1| S-adenosyl-methyltransferase MraW [Mesorhizobium sp. BNC1] gi|123353547|sp|Q11GR7|RSMH_MESSB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|110285349|gb|ABG63408.1| S-adenosyl-methyltransferase MraW [Chelativorans sp. BNC1] Length = 339 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 152/324 (46%), Positives = 214/324 (66%), Gaps = 3/324 (0%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77 H+PVLL +V+ L PA GK+ILD TFGAGGY+R+ + G++VIA+D+DP A++ G+ Sbjct: 14 APHLPVLLAEVLEALEPARGKLILDGTFGAGGYTRALLEAGADVIAIDQDPDAIAGGKPL 73 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 +++ + L + FS++++ + +DG+V D+GVSSMQ+D +RGFSF++ GPLDMRM Sbjct: 74 AQEFAPRLRLERGRFSEMEEIAGEM-LDGIVLDVGVSSMQLDQAERGFSFRREGPLDMRM 132 Query: 138 SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK 197 G SA+DVVN+ DL RI G+LGEE+ A RIA AI K R PF+TT DL+ L+++ Sbjct: 133 GQEGTSAADVVNKFKAGDLARIFGLLGEERHAGRIARAIEKGRAEKPFRTTGDLAELVER 192 Query: 198 TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRL 257 + ++IHPATR FQ LRIFVN+E+ ELA+ L +AE+ LK GG+L VV+FHSLEDR+ Sbjct: 193 VIGHRPTDKIHPATRVFQGLRIFVNDELGELARALFAAERLLKPGGILAVVTFHSLEDRI 252 Query: 258 VKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 VK+F +RSG RH+ A VF+ K V P + + A N R+RSA LRA RT Sbjct: 253 VKRFLQARSGPQAQSRHLPEKAAAQPVFEKP-MKPVSPGEAETAENPRARSAHLRAARRT 311 Query: 318 VERS-IEDDSFVHLPRLPTLSQFR 340 + ++D +P L Q Sbjct: 312 AHPAGVQDFKLFGVPALFVTEQLG 335 >gi|224476281|ref|YP_002633887.1| S-adenosyl-methyltransferase MraW [Staphylococcus carnosus subsp. carnosus TM300] gi|262826678|sp|B9DPQ9|RSMH_STACT RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|222420888|emb|CAL27702.1| putative MraW methylase family S-adenosyl-methyltransferase [Staphylococcus carnosus subsp. carnosus TM300] Length = 311 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 109/309 (35%), Positives = 169/309 (54%), Gaps = 11/309 (3%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + HV V+L + I LN V +D T G G++ ++IA+D+D A+ Sbjct: 1 MFHHVSVMLRETIDELNVKKDGVYVDCTLGGAGHALYLLNQLDENGHLIAIDQDLTAIEN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E ++D+ +Q + + F Q+ + D VDG+ +DLGVSS Q+D +RGFS+ + Sbjct: 61 AKEVLKDHLDQVTFVHSNFRQINQILDDLDIDKVDGIYYDLGVSSPQLDVPERGFSYHQD 120 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM + +SA +VVN+ +DL RI GEEK + +IA I K R++ P +TT Sbjct: 121 ARLDMRMDQTQELSAYEVVNEWPYEDLVRIFYRYGEEKFSKQIARRIEKTRENEPIETTL 180 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L +I++ + + HPA R FQA+RI VN+E++ L A + +K G + V+ Sbjct: 181 QLVDVIKEGIPAKARRKGGHPAKRVFQAIRIAVNDELKAFEDSLEQAIERVKVHGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 +FHSLEDRL K+ F R +IP P + + +K + ++ED+A N R+ Sbjct: 241 TFHSLEDRLCKQIFQEYEKGPEVPRGLPIIPEEYTPK-LKRVNRKPISASEEDLAENNRA 299 Query: 307 RSAKLRAGM 315 RSAKLR Sbjct: 300 RSAKLRVAE 308 >gi|146342506|ref|YP_001207554.1| S-adenosyl-methyltransferase MraW [Bradyrhizobium sp. ORS278] gi|263445831|sp|A4YZL1|RSMH_BRASO RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|146195312|emb|CAL79337.1| S-adenosyl-dependent methyl transferase [Bradyrhizobium sp. ORS278] Length = 331 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 144/334 (43%), Positives = 199/334 (59%), Gaps = 9/334 (2%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRD 67 MS+A H+PVL + +A+L P G +DATFGAGGY+R G+ VIA+DRD Sbjct: 1 MSTADP----RHIPVLGPEAVAMLAPRDGGTYVDATFGAGGYTRLILATPGTRVIAIDRD 56 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRG 124 A++ G + + + + +L ++ FS L + + V DG+V D+GVSSMQ+D RG Sbjct: 57 STAIAGGADLVGEANGRLTLVESRFSALAEICAAQAVGQVDGIVMDVGVSSMQLDTAARG 116 Query: 125 FSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 FSF+ GPLDMRM+ +G SA+DV+ QA+ +DL ++ I GEE+ + IA AIV R+ Sbjct: 117 FSFRFDGPLDMRMADTGPSAADVIAQASERDLADVIYIFGEERHSRGIARAIVAARKEQQ 176 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 TT+ L+ ++ + V SK IHPATR+FQALRI VN E++EL Q L +AE+ L G Sbjct: 177 ITTTRQLADIVARVV-RSKPGDIHPATRTFQALRILVNEELDELEQALSAAERILPPSGR 235 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 L VVSFHSLEDR+VK F A RS RH+ FQ + +K VV + + N Sbjct: 236 LAVVSFHSLEDRIVKTFLAERSKIGGGSRHLPEIAQQAPSFQLLNRKPVVADEAETVANP 295 Query: 305 RSRSAKLRAGMRTVERSIEDDSFVHLPRLPTLSQ 338 R+RSAKLR RT + S PRL + + Sbjct: 296 RARSAKLRGAARTTAPAHPPSSSSAWPRLADVMR 329 >gi|300361452|ref|ZP_07057629.1| S-adenosyl-methyltransferase MraW [Lactobacillus gasseri JV-V03] gi|300354071|gb|EFJ69942.1| S-adenosyl-methyltransferase MraW [Lactobacillus gasseri JV-V03] Length = 315 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 108/311 (34%), Positives = 169/311 (54%), Gaps = 13/311 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76 H VLL + I LNP + +DATFG GG++R + VI D+D +A+S +E Sbjct: 4 KHKSVLLHETIDNLNPKDDGLYVDATFGGGGHARYLLSKLNRGTVIGFDQDEYAISMAKE 63 Query: 77 TMRD-----YKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSF 127 + + + + L F L+ + + G+DG+ +DLGVSS Q D +RGFS+ Sbjct: 64 SFAEELKPGAEPKLILVHDNFCHLKKNLVELGISDGIDGIYYDLGVSSPQFDQPERGFSY 123 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + LDMRM S + A +VN + K+L+ IL G+EK + +IA IV RR+ P Sbjct: 124 RFDARLDMRMDQSQELDAYTIVNTWSQKELSDILYKYGDEKFSRQIARKIVDRRREKPIV 183 Query: 187 TTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT DL +I+ + ++ + HPA +SFQA+R+ VNNE+ L + L A K L+ GG + Sbjct: 184 TTFDLVDVIKDAIPAYARRSGGHPAKKSFQAIRVAVNNELGVLQESLEEAIKLLRPGGRI 243 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V++F S ED++VKK F S + + + I++K ++ + +++ N R Sbjct: 244 SVITFQSHEDKIVKKIFKKYSEVEIPRGMPMVPADSKPTLRLISRKPIMASSDELEENNR 303 Query: 306 SRSAKLRAGMR 316 S SAKLR + Sbjct: 304 SHSAKLRVAEK 314 >gi|89895661|ref|YP_519148.1| hypothetical protein DSY2915 [Desulfitobacterium hafniense Y51] gi|219670081|ref|YP_002460516.1| S-adenosyl-methyltransferase MraW [Desulfitobacterium hafniense DCB-2] gi|122482071|sp|Q24TD8|RSMH_DESHY RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446217|sp|B8FT64|RSMH_DESHD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|89335109|dbj|BAE84704.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219540341|gb|ACL22080.1| S-adenosyl-methyltransferase MraW [Desulfitobacterium hafniense DCB-2] Length = 310 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 102/307 (33%), Positives = 162/307 (52%), Gaps = 10/307 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 HV VLL++ + + P +D T G G+S ++ D+DP A+ Q Sbjct: 4 HHVTVLLKETVDGVVRDPSGTYVDCTLGGAGHSGYVLSRLSEKGKLVGFDQDPLAIKNAQ 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + L F L++ + V GV+FDLGVSS Q+D +RGFS+ + Sbjct: 64 DKFAG-DPRVFLVNRNFEGLEESLQSLELLPVQGVLFDLGVSSPQLDEAERGFSYMQDAE 122 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ + +SA +VN+ + L IL GEEK + RI IV+ R+ TT +L Sbjct: 123 LDMRMNPQNPLSAKTLVNEGKAEMLAEILWKYGEEKWSKRIVEFIVEARKQKSITTTGEL 182 Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I++ + ++ HPA R+FQALRI VN+E+ L + L + L GG + V++F Sbjct: 183 VDIIKRAIPAGARREGPHPAKRTFQALRIAVNDELGVLERALDQVIRCLAPGGRVGVITF 242 Query: 251 HSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK+ F S G+ + A+ + + +K ++P+ +++ N R+RSA Sbjct: 243 HSLEDRIVKETFNSWLGRCTCPPVFPVCQCGARAMARLVHRKPILPSPQEIEANPRARSA 302 Query: 310 KLRAGMR 316 KLR + Sbjct: 303 KLRIAEK 309 >gi|239636344|ref|ZP_04677346.1| S-adenosyl-methyltransferase MraW [Staphylococcus warneri L37603] gi|239597699|gb|EEQ80194.1| S-adenosyl-methyltransferase MraW [Staphylococcus warneri L37603] Length = 311 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 98/308 (31%), Positives = 161/308 (52%), Gaps = 9/308 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H+ V+L + I LN V +D T G G++ +IA+D+D A+ Sbjct: 1 MFHHISVMLNETIDYLNIKEDGVYVDCTLGGAGHALYLLNQLSDEGRLIAIDQDLTAIEN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 ++ ++++ + + + F +L + + + VDG+ +DLGVSS Q+D +RGFS+ Sbjct: 61 AKDVLKEHLHKVTFIHSNFRELTQILNELNIEKVDGIYYDLGVSSPQLDVPERGFSYHHD 120 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM + +SA +VVN+ + L +I GEEK + +IA I R+ P +TT Sbjct: 121 AKLDMRMDQTQSLSAYEVVNEWPYEALVKIFYRYGEEKFSKQIARRIEANREKQPIETTL 180 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I++ + + HPA R FQA+RI VN+E+ + A + +K G + V+ Sbjct: 181 ELVEVIKEGIPAKARRKGGHPAKRVFQAIRIAVNDELSAFEDSIEQAIELVKVNGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F R + A+ + + +K + T ED+ N R+R Sbjct: 241 TFHSLEDRLCKQMFQEYEKGPDVPRGLPVIPEAYTPKLKRVNRKPITATDEDLDDNNRAR 300 Query: 308 SAKLRAGM 315 SAKLR Sbjct: 301 SAKLRIAE 308 >gi|163746120|ref|ZP_02153479.1| S-adenosyl-methyltransferase MraW [Oceanibulbus indolifex HEL-45] gi|161380865|gb|EDQ05275.1| S-adenosyl-methyltransferase MraW [Oceanibulbus indolifex HEL-45] Length = 327 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 148/320 (46%), Positives = 201/320 (62%), Gaps = 6/320 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78 H PVLL ++ + P V LD TFGAGGY+R F + G+ VIA+DRDP A E Sbjct: 11 HTPVLLRPILTAVAPVE-GVWLDGTFGAGGYTRGFLEAGAARVIAVDRDPLAFEMAAEWA 69 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138 D+ ++ ++ Q FS++ +Y D +DGVV DLGVSSMQ+D +RGFSF K GPLDMRMS Sbjct: 70 GDFGDRITMQQGVFSRMDEYAQD--LDGVVLDLGVSSMQLDQAERGFSFMKDGPLDMRMS 127 Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198 G SA+D+VN+A + + IL GEE+ + RIA +IV+ R+ AP TT +L+ L++ Sbjct: 128 QDGPSAADLVNEAEEEIIANILFQYGEERASRRIAKSIVRAREVAPITTTLELAKLVEGC 187 Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258 + SK + HPATRSFQALRI VNNE EL QGL +AE+ALK GG L VV+FHS+EDR+V Sbjct: 188 LPRSKPGQSHPATRSFQALRIAVNNEYGELFQGLMAAERALKPGGKLAVVTFHSVEDRMV 247 Query: 259 KKFFASRSGKVMAVRHMIPS-NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 K+F +R+G P+ F ++K + P +++ N RSRSAKLR RT Sbjct: 248 KRFLTARAGAGGNANRFAPALEQEAPQFTLKSRKAIGPDAQELDENPRSRSAKLRVATRT 307 Query: 318 VERSIE-DDSFVHLPRLPTL 336 S E D + +P + + Sbjct: 308 DAPSGEIDAKSIGMPMVRGI 327 >gi|86137691|ref|ZP_01056268.1| S-adenosyl-methyltransferase MraW [Roseobacter sp. MED193] gi|85826026|gb|EAQ46224.1| S-adenosyl-methyltransferase MraW [Roseobacter sp. MED193] Length = 330 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 153/330 (46%), Positives = 206/330 (62%), Gaps = 6/330 (1%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRD 67 M++ G HVPVLL ++ + P G+ LD TFGAGGY+R + G+ VI +DRD Sbjct: 1 MTTDRPTPSGPHVPVLLRPLLKAVAPVSGR-WLDGTFGAGGYTRGLLEAGAEQVIGVDRD 59 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 P A Q DY ++ L + FS++ +Y D +DGVV DLGVSSMQ+D +RGFSF Sbjct: 60 PLAFELAQPWAADYGDRLVLQEGVFSKMDEYAQD--LDGVVLDLGVSSMQLDLAERGFSF 117 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRMS SG SA+D+V + + L IL GEE+ + RIA +IVK R+ P T Sbjct: 118 MRDGPLDMRMSQSGPSAADLVAELSEVQLADILFHFGEERASRRIAKSIVKTRELEPITT 177 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T L+ LI+ + +K + HPATRSFQALRI VN E EEL GL +AE+ALK GGLL V Sbjct: 178 TLQLAKLIEGCLPRAKPGKSHPATRSFQALRIAVNAEYEELFNGLLAAERALKPGGLLAV 237 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRS 306 V+FHS+EDR+VK+FF R+ K P A P+ F+ +T+K V P +++A N RS Sbjct: 238 VTFHSVEDRMVKRFFQHRANKTGRANRYAPEVAEIPSQFELVTRKAVGPDDDELAENPRS 297 Query: 307 RSAKLRAGMRTVERSIEDDSF-VHLPRLPT 335 RSA+LR G RT + + + +P+L Sbjct: 298 RSARLRVGRRTDAAPVPISAKDLSMPQLKE 327 >gi|118581697|ref|YP_902947.1| S-adenosyl-methyltransferase MraW [Pelobacter propionicus DSM 2379] gi|262824775|sp|A1AU69|RSMH_PELPD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|118504407|gb|ABL00890.1| S-adenosyl-methyltransferase MraW [Pelobacter propionicus DSM 2379] Length = 313 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 125/307 (40%), Positives = 176/307 (57%), Gaps = 10/307 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQ 75 H+ V+ E+V+ L+P PG LD T G GG++ + G +I +DRD A+ Sbjct: 6 HLSVMPEEVLRFLSPRPGGCYLDGTLGGGGHAALVAERCAPGGGTLIGMDRDLEALKAAA 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + + + L F+ + + GVD G V DLGVSS Q+D RGFSFQ+ G Sbjct: 66 ERLSRFGDAVRLLHGNFADIATRLDSLGVDALDGFVLDLGVSSHQLDTARRGFSFQQEGA 125 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM SG +A+D+VN+ +L RI+ GEE+ A RIA IV+ R AP + T L Sbjct: 126 LDMRMDGDSGETAADLVNRLPEHELERIIREYGEERWAKRIASFIVRARSEAPIENTLRL 185 Query: 192 SSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+ + +K R+HPATR+FQALRI VN+E+E L +GL+SA LK GG +V+SF Sbjct: 186 VDIIKGAIPKAKWEERLHPATRTFQALRIAVNHELESLERGLKSAIDRLKPGGRGVVISF 245 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK F + R+ + + +T + V T+E++ N RSRSA Sbjct: 246 HSLEDRIVKHVFREYAAGCTCPRNLPVCVCGRQPRVRVLTGRPVTATEEELRDNPRSRSA 305 Query: 310 KLRAGMR 316 KLRA + Sbjct: 306 KLRAVEK 312 >gi|257451725|ref|ZP_05617024.1| methyltransferase [Fusobacterium sp. 3_1_5R] Length = 313 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 108/307 (35%), Positives = 175/307 (57%), Gaps = 10/307 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H+PVL E+ + L P + +D T G G +S K +I++D+D A++ ++ Sbjct: 9 HIPVLYEETLDQLVWNPDGIYIDCTLGGGSHSEGILKRLSEKGRLISIDQDANAIAFCKK 68 Query: 77 TMRDYKEQFSLFQATFSQLQ--DYVPD-KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + Y +Q+S+FQ F + Y+ VDG++ D+GVSS Q+D G+RGFS++ L Sbjct: 69 RLEKYGKQWSVFQNNFENIDIVSYLAGVDKVDGILMDIGVSSTQLDDGERGFSYRYDAKL 128 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +SA +VVN +DL RIL GEE+ A +IA I + R+ P +TT +L Sbjct: 129 DMRMNKEQDLSAYEVVNTYAEQDLVRILFEYGEERHAKKIASFICENRKEKPIETTGELV 188 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++I++ +S+ HPA ++FQA+RI VN E+E L + ++ + LK G L +++FHS Sbjct: 189 AIIKRA--YSERASKHPAKKTFQAIRIEVNRELEVLEKAIKKSVDLLKPKGHLAIITFHS 246 Query: 253 LEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDRLVK F + + A + +TKK ++P+++++ N R+ S+KL Sbjct: 247 LEDRLVKTVFKDLATACKCPPELPVCVCGGKAKVKILTKKPIIPSEDELGKNNRAHSSKL 306 Query: 312 RAGMRTV 318 R R Sbjct: 307 RVVERLA 313 >gi|294085909|ref|YP_003552669.1| S-adenosyl-methyltransferase MraW [Candidatus Puniceispirillum marinum IMCC1322] gi|292665484|gb|ADE40585.1| S-adenosyl-methyltransferase MraW [Candidatus Puniceispirillum marinum IMCC1322] Length = 334 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 149/326 (45%), Positives = 194/326 (59%), Gaps = 17/326 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQETM 78 H VLL +V+ L P GKV LDATFG GGYSR+ VIA+DRDP A++ GQ+ + Sbjct: 7 HQSVLLNEVVDALRPTNGKVYLDATFGNGGYSRALLDAADCTVIAIDRDPDAIARGQKMV 66 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGV---------------DGVVFDLGVSSMQIDCGDR 123 +YK +F+L + FS++Q V V DG FDLGV S Q+D DR Sbjct: 67 AEYKPRFTLVEGCFSEMQSLVQSALVSTGSGSTSHADVPVLDGAAFDLGVCSTQLDQADR 126 Query: 124 GFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 GFSF++ GPLDMRMS SGISA+D+V D+ +IL GEEK + RIA AIVK R Sbjct: 127 GFSFRQDGPLDMRMSQSGISAADIVMTHEEHDIAQILWEYGEEKASRRIAKAIVKARSET 186 Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 +T L+++I + + +I PATRSFQALRI+VN E++EL L ++E LK GG Sbjct: 187 AISSTSQLAAIIHSVMPAKRPGQIDPATRSFQALRIYVNRELDELKSALTTSEAMLKPGG 246 Query: 244 LLIVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 +L VVSFHSLEDR+VK+F ASRS RH PSN F+ +T+K + + Sbjct: 247 ILAVVSFHSLEDRIVKRFLASRSQIASQPSRHRPPSNGPAPTFELLTRKALQAGTRERED 306 Query: 303 NRRSRSAKLRAGMRTVERSIEDDSFV 328 N R+RSAKLR MRT + + Sbjct: 307 NSRARSAKLRVAMRTNAPYPGQEDAL 332 >gi|53729126|ref|ZP_00134091.2| COG0275: Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207498|ref|YP_001052723.1| S-adenosyl-methyltransferase MraW [Actinobacillus pleuropneumoniae L20] gi|263440608|sp|A3MY82|RSMH_ACTP2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|126096290|gb|ABN73118.1| S-adenosyl-methyltransferase MraW [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 313 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 120/316 (37%), Positives = 177/316 (56%), Gaps = 16/316 (5%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69 ++ T+ H+ VLL + + L P + +D TFG GG+SR +IA DRDP Sbjct: 1 MNDTVHKHITVLLHEAVDGLAIKPNGIYIDGTFGRGGHSRLILSKLSEQGRLIATDRDPR 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGF 125 A++ +F + FS + + G +DG++ DLGVSS Q+D +RGF Sbjct: 61 AIAEANTI---NDARFQIVHTAFSAIPEVCEQLGLTGKIDGILLDLGVSSPQLDDAERGF 117 Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA- 183 SF + GPLDMRM + G+SA++ + Q +V DL +L GEE+ A RIA A+V +SA Sbjct: 118 SFMRDGPLDMRMDTTKGLSAAEWLAQVSVDDLAWVLKTFGEERFAKRIAQAVVSYNKSAT 177 Query: 184 -PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 T L+ +I V F K+ HPATRSFQA+RIF+N+E++EL + L+SA L Sbjct: 178 DKISRTLQLAQIIADAVPF-KDKHKHPATRSFQAIRIFINSELDELEKALQSALSVLAPE 236 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300 G L ++SFHSLEDR+VK+F S V ++ S + + I K ++P++ ++ Sbjct: 237 GRLSIISFHSLEDRMVKQFMKKNSKGMGVPKGLPILESELNKNIPLKIIGKAIMPSEAEI 296 Query: 301 AFNRRSRSAKLRAGMR 316 N RSRSA LR + Sbjct: 297 EANPRSRSAVLRIAEK 312 >gi|262831468|sp|C5WIJ4|RSMH_STRDG RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 316 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 107/320 (33%), Positives = 170/320 (53%), Gaps = 15/320 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M+ H HV VLL + + +L+ P + +DAT G G+S ++ D Sbjct: 1 MTKEFH-----HVTVLLHETVDMLDIKPNGIYVDATLGGSGHSAYLLSKLSEQGHLYCFD 55 Query: 66 RDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDC 120 +D A+ Q T++ Y K Q + + F L+ + GVD G+++DLGVSS Q+D Sbjct: 56 QDQKAIDNAQVTLKSYIDKGQVTFIKDNFRHLKARLTALGVDEIDGILYDLGVSSPQLDE 115 Query: 121 GDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS+ + PLDMRM + ++A DVVN DL +I GE+K + +IA I + Sbjct: 116 RERGFSYNQDAPLDMRMDRQAPLTAYDVVNTYPFNDLVKIFFKYGEDKFSKQIARKIEQA 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R P +TT +L+ LI+ + + HPA + FQA+RI VN+E+ + ++ A + Sbjct: 176 RAIKPIETTTELAELIKAAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQDAMEL 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L G + V++FHSLEDRL K+ F S + F+ +++K ++P+QE Sbjct: 236 LALDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPEDMKPTFELVSRKPILPSQE 295 Query: 299 DVAFNRRSRSAKLRAGMRTV 318 ++A N R+ SAKLR + Sbjct: 296 ELAANNRAHSAKLRVAKKIR 315 >gi|238927330|ref|ZP_04659090.1| S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Selenomonas flueggei ATCC 43531] gi|238884612|gb|EEQ48250.1| S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Selenomonas flueggei ATCC 43531] Length = 312 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 122/311 (39%), Positives = 168/311 (54%), Gaps = 10/311 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVS 72 T HV VLLE+ + LN P + +DAT G G++R +I +D+D A++ Sbjct: 2 TEFHHVSVLLEETVGALNVMPDGIYVDATLGGAGHARRIAAHLSEHGRLIGIDQDETAIA 61 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQK 129 E + D + Q SL + F L + +GV DGV+FDLGVSS QID +RGFS+ + Sbjct: 62 AAHERLADVRCQVSLVRDNFRNLSAILAAEGVFSVDGVLFDLGVSSPQIDTPERGFSYMQ 121 Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM + +SA DVVN + LT I GEE+ A RIA I K RQ+ P TT Sbjct: 122 DAPLDMRMDQRARLSAYDVVNAYTAEQLTEIFYTYGEERWAKRIAAFIEKERQAHPIATT 181 Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 DL ++I + V + HPA R FQA+RI VN+E+ L L +A AL+ GG L V Sbjct: 182 GDLVAVIDRAVPKEVRARGGHPAKRVFQAIRIEVNDELGILEGALSAAVNALRIGGRLAV 241 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 ++FHSLEDR+VK + + H + H + + K +E+ A N R+ Sbjct: 242 ITFHSLEDRIVKNTLRRLAQGCICPPHTPVCVCGHTPEVRLV-GKAKAAGKEECAANTRA 300 Query: 307 RSAKLRAGMRT 317 RSAKLR + Sbjct: 301 RSAKLRVAEKI 311 >gi|312869527|ref|ZP_07729682.1| S-adenosyl-methyltransferase MraW [Lactobacillus oris PB013-T2-3] gi|311094974|gb|EFQ53263.1| S-adenosyl-methyltransferase MraW [Lactobacillus oris PB013-T2-3] Length = 317 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 112/313 (35%), Positives = 173/313 (55%), Gaps = 11/313 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73 HV VLL++ +A LN P +D T G GG++ + ++ + D+D A+ Sbjct: 4 ATFKHVTVLLQEAVAGLNVQPAGTYVDGTLGGGGHTSAILGQLTTGHLYSFDQDETAIDY 63 Query: 74 GQETMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQ 128 ++ ++D + +L + F LQ + +GV DGV++DLGVSS Q D RGFS+Q Sbjct: 64 NRDRLKDALAAGKLTLIEDNFRHLQKDLAAQGVHKVDGVLYDLGVSSPQFDDAQRGFSYQ 123 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 PLDMRM+ +SA +VVN+ + L RIL GEE+ A +IA I +RRQ P +T Sbjct: 124 LDAPLDMRMNQGQSLSAMEVVNEWPYERLVRILYRYGEERFAKQIARKIEQRRQREPIRT 183 Query: 188 TQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T +L +I++ + + + + HPA +SFQA+RI VN+E+ L + L A L GG + Sbjct: 184 TFELVDVIKEAIPAAARRHGGHPAKKSFQAIRIAVNDELGALEESLEQALAMLAVGGRIS 243 Query: 247 VVSFHSLEDRLVKKFFASRS--GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 V++F SLEDRLVK F +S + + F+ I +K ++P +++A N Sbjct: 244 VITFQSLEDRLVKTMFKEKSSISDDLPQGLPVIPEGMSPDFKLINRKPILPGTQELAENH 303 Query: 305 RSRSAKLRAGMRT 317 R+ SAKLR + Sbjct: 304 RAHSAKLRIIEKI 316 >gi|258438778|ref|ZP_05689931.1| S-adenosyl-methyltransferase mraW [Staphylococcus aureus A9299] gi|257848037|gb|EEV72030.1| S-adenosyl-methyltransferase mraW [Staphylococcus aureus A9299] Length = 311 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 99/308 (32%), Positives = 160/308 (51%), Gaps = 9/308 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H+ V+L + I LN V +D T G G++ +IA+D+D A+ Sbjct: 1 MFHHISVMLNETIDYLNVKENGVYIDCTLGGAGHALYLLNQLNDDGRLIAIDQDQTAIDN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E ++D+ + + + F +L + D + VDG+ +DLGVSS Q+D +RGFS+ Sbjct: 61 AKEVLKDHLHKVTFVHSNFRELTQILKDLNIEKVDGIYYDLGVSSPQLDIPERGFSYHHD 120 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM + ++A ++VN + + L +I GEEK + +IA I + P TT Sbjct: 121 ATLDMRMDQTQELTAYEIVNNWSYEALVKIFYRYGEEKFSKQIARRIEAHCEQQPITTTL 180 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I++ + + HPA R FQALRI VN+E+ + A + +K G + V+ Sbjct: 181 ELVDIIKEGIPAKARRKGGHPAKRVFQALRIAVNDELSAFEDSIEQAIELVKVDGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F R + A+ + + +K + T+ED+ N R+R Sbjct: 241 TFHSLEDRLCKQVFQEYEKGPEVPRGLPVIPEAYTPKLKRVNRKPITATEEDLDDNNRAR 300 Query: 308 SAKLRAGM 315 SAKLR Sbjct: 301 SAKLRVAE 308 >gi|294784023|ref|ZP_06749345.1| S-adenosyl-methyltransferase MraW [Fusobacterium sp. 1_1_41FAA] gi|294479835|gb|EFG27614.1| S-adenosyl-methyltransferase MraW [Fusobacterium sp. 1_1_41FAA] Length = 314 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 103/308 (33%), Positives = 171/308 (55%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+PVL + + L P V +D T G G +S + S+ ++++D+D A+ ++ Sbjct: 9 HIPVLYYETLDNLVINPDGVYIDCTLGGGSHSEGILERLSDKGLLLSIDQDSNAIEYSKK 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + Y ++ + + F + G VDG++ D+GVSS Q+D +RGFS++ L Sbjct: 69 RLEKYASKWKVLKGNFENIDTLAYMAGIDKVDGILMDIGVSSKQLDEAERGFSYRYDVKL 128 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +SA DVVN + ++L+RI+ GEE+ A +IA I + R+ P TT +L Sbjct: 129 DMRMNTEQKLSAYDVVNTYSEEELSRIIFEYGEERFARKIAKLICENRKIKPITTTFELV 188 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +LI++ + HPA ++FQA+RI VN E+E L + A + LK GG L +++FHS Sbjct: 189 ALIRRAYP--ERASKHPAKKTFQAIRIEVNRELEVLENAMSKAVELLKVGGRLGIITFHS 246 Query: 253 LEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK F + + I F+ IT+K ++P ++++ N R+ S+KL Sbjct: 247 LEDRIVKNKFKDLATACKCPKDIPICMCGGVKKFEIITRKPIIPIEDELKNNNRAHSSKL 306 Query: 312 RAGMRTVE 319 R R ++ Sbjct: 307 RILERILD 314 >gi|254467183|ref|ZP_05080594.1| S-adenosyl-methyltransferase MraW [Rhodobacterales bacterium Y4I] gi|206688091|gb|EDZ48573.1| S-adenosyl-methyltransferase MraW [Rhodobacterales bacterium Y4I] Length = 330 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 149/333 (44%), Positives = 205/333 (61%), Gaps = 6/333 (1%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRD 67 M+ G H+PVLL ++ + P G+ LD TFGAGGY+R G++ VIA+DRD Sbjct: 1 MTDRPSAPSGPHIPVLLRPLLKAVAPVSGR-WLDGTFGAGGYTRGLLDAGADQVIAVDRD 59 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 P A + Y ++ L Q FS++ +Y D +DGVV DLGVSSMQ+D +RGFSF Sbjct: 60 PLAFELAKPWAGQYGDRLILQQGVFSRMDEYAQD--LDGVVLDLGVSSMQLDLAERGFSF 117 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 K GPLDMRMS SG SA+D++ + + IL GEE+ + RIA AIV+ R++ P T Sbjct: 118 MKDGPLDMRMSQSGPSAADLIAELTEAQIADILYHYGEERASRRIARAIVREREAEPITT 177 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T L+ +I+ + K + HPATRSFQ LRI VN E EEL +GL +AE+ALK GGLL V Sbjct: 178 TLRLAGIIESCLPRPKPGQSHPATRSFQGLRIAVNAEYEELFEGLLAAERALKPGGLLAV 237 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPS-NAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+FHS+EDR+VK+FF R+GK P PA F+ +T+K V P ++++A N R+ Sbjct: 238 VTFHSVEDRMVKRFFQHRAGKTGRANRYAPEQEETPAQFELVTRKAVGPDEQELAENPRA 297 Query: 307 RSAKLRAGMRTVERSIEDDSF-VHLPRLPTLSQ 338 RSA+LR G RT + + +P+L + Sbjct: 298 RSARLRVGRRTNAAPGPISAKELGMPQLKETPK 330 >gi|313890654|ref|ZP_07824281.1| S-adenosyl-methyltransferase MraW [Streptococcus pseudoporcinus SPIN 20026] gi|313120965|gb|EFR44077.1| S-adenosyl-methyltransferase MraW [Streptococcus pseudoporcinus SPIN 20026] Length = 316 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 101/320 (31%), Positives = 166/320 (51%), Gaps = 15/320 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65 M+ H H+ VLL + + +L P + +DAT G G+S ++ D Sbjct: 1 MTKEFH-----HITVLLHETVDMLQVKPDGIYVDATLGGAGHSAYLLSQLNEHGHLYCFD 55 Query: 66 RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDC 120 +D A+ Q + + E+ + + F L+ + GVD G+++DLGVSS Q+D Sbjct: 56 QDQKAIDNAQVFLAPFIEKGMVTFIKDNFRHLKSQMQAHGVDFIDGILYDLGVSSPQLDE 115 Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS+++ PLDMRM ++A VVN + DL RI GE++ + ++A I + Sbjct: 116 RERGFSYRQDAPLDMRMDSDASLTAYQVVNDYSFNDLVRIFFRYGEDRFSKQVARKIEQA 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R P +TT +L+ LI+ + + HPA + FQA+RI VN+E+ + L+ A Sbjct: 176 RAIKPIETTAELAELIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAAEESLQQAMDV 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L G + V++FHSLEDRL K+ F S + F+ +++K ++P++E Sbjct: 236 LALEGRISVITFHSLEDRLTKQLFKEASVVDVPKGLPFIPEEMQPKFELVSRKPILPSKE 295 Query: 299 DVAFNRRSRSAKLRAGMRTV 318 ++A N R+ SAKLR + Sbjct: 296 ELAENNRAHSAKLRVAKKIR 315 >gi|223041547|ref|ZP_03611748.1| S-adenosyl-methyltransferase MraW [Actinobacillus minor 202] gi|223017642|gb|EEF16052.1| S-adenosyl-methyltransferase MraW [Actinobacillus minor 202] Length = 314 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 121/320 (37%), Positives = 177/320 (55%), Gaps = 20/320 (6%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 MS +H H+ VLL + + L P + +D TFG GG+SR +IA D Sbjct: 1 MSDTLH----KHITVLLHEAVEGLAIKPNGIYIDGTFGRGGHSRLILSKLNEQGRLIATD 56 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCG 121 RDP A++ +F + FS + D G +DG++ DLGVSS Q+D Sbjct: 57 RDPRAIAEAHTI---TDPRFQIVHTAFSAIPQVCEDLGLIGKIDGILLDLGVSSPQLDDA 113 Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF + GPLDMRM S G+SA++ ++Q +V+DL +L GEE+ A RIA AIV Sbjct: 114 ERGFSFMRDGPLDMRMDTSKGLSAAEWLDQVSVEDLAWVLKEFGEERFAKRIATAIVNFN 173 Query: 181 QS--APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 ++ T L+ +I V F K+ HPATRSFQA+RIF+N+E++EL + L SA Sbjct: 174 KTSGQKITRTLQLAQIISDAVPF-KDKHKHPATRSFQAIRIFINSELDELEKALNSALSV 232 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPT 296 L G L ++SFHSLEDR+VK+F S R ++ ++ + + K ++P+ Sbjct: 233 LAPEGRLSIISFHSLEDRMVKQFMKKNSKGKEVPRGLPILEADLNKDIPLKTIGKAIMPS 292 Query: 297 QEDVAFNRRSRSAKLRAGMR 316 + ++ N RSRSA LR + Sbjct: 293 EAEIEANPRSRSAVLRVAEK 312 >gi|221133797|ref|ZP_03560102.1| S-adenosyl-methyltransferase MraW [Glaciecola sp. HTCC2999] Length = 310 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 119/307 (38%), Positives = 176/307 (57%), Gaps = 13/307 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VLL + I L P + +DATFG GG+S +IA DRDP A+ Q+ Sbjct: 6 HTSVLLHECIEGLAIKPDGIYIDATFGRGGHSSYILNALGEHGRLIAFDRDPAAIEAAQK 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + D +F++ + F+Q+ + G VDGV+ DLGVSS Q+D RGFSF + GP Sbjct: 66 FVND--PRFTIVHSAFAQMDEVPLTAGLIDQVDGVLMDLGVSSPQLDDSSRGFSFLRDGP 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G+SA + A+ +D+ +++ GEEK RIAHAIV R P +T L Sbjct: 124 LDMRMDTSTGVSAEQWLAHADEQDIAQVIKEFGEEKFGKRIAHAIVNTRVHTPINSTLQL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +++I + + K+ HPATR+FQ +RI++N+E+++L GL++A K LK G L +SFH Sbjct: 184 AAIIAEAMPV-KDKHKHPATRAFQGIRIYINSELDQLRDGLKAAVKLLKPTGRLAAISFH 242 Query: 252 SLEDRLVKKFFASRS--GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK+F +S V ++ + + K + P+ E+V+ N RSRS+ Sbjct: 243 SLEDRMVKRFMREQSKGKNVPHNMPILQAEIDADKVLKLIGKAIKPSDEEVSNNPRSRSS 302 Query: 310 KLRAGMR 316 LR + Sbjct: 303 VLRVAEK 309 >gi|295102284|emb|CBK99829.1| S-adenosyl-methyltransferase MraW [Faecalibacterium prausnitzii L2-6] Length = 322 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 113/316 (35%), Positives = 172/316 (54%), Gaps = 12/316 (3%) Query: 11 SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-----KMGSNVIALD 65 + +H+PVLL + + LN P LD T G G+SR G +++LD Sbjct: 8 AQFDPASFEHIPVLLNECLDGLNIDPAGTYLDGTAGGAGHSRQIALRLDGAKGGRLVSLD 67 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGD 122 +DP AV + + ++ Q F + G+ +G + DLGVSS Q+D Sbjct: 68 QDPDAVQTARARLAGLPA--TVVQINFRYAGQALESLGIEKINGALLDLGVSSHQLDDAA 125 Query: 123 RGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 RGFS++ PLDMRMS G +A+D+VN A+ ++L+RIL GEE A +IA IV+ R++ Sbjct: 126 RGFSYRADAPLDMRMSQQGETAADLVNTASREELSRILRDYGEEPYAWQIAGRIVEARET 185 Query: 183 APFQTTQDLSSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 AP +TT L+ ++ + ++ + +P+ R+FQALRI VN+E++ L +GL + L Sbjct: 186 APIETTLQLADIVAGAMPPAERRKNKNPSRRTFQALRIAVNHELDALEEGLDTIFDHLAP 245 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDV 300 GG L V++FHSLEDRLVK F S + A + IT+K + ++++ Sbjct: 246 GGRLCVITFHSLEDRLVKNKFRRWSTACTCPPEFPVCVCGGKAKAKLITRKPIEADKQEL 305 Query: 301 AFNRRSRSAKLRAGMR 316 NRRSRSA LR + Sbjct: 306 EENRRSRSAHLRVLEK 321 >gi|190149279|ref|YP_001967804.1| S-adenosyl-methyltransferase MraW [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307262590|ref|ZP_07544221.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|263446582|sp|B3GZK0|RSMH_ACTP7 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|189914410|gb|ACE60662.1| S-adenosyl-methyltransferase MraW [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306872088|gb|EFN03801.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 313 Score = 373 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 120/316 (37%), Positives = 176/316 (55%), Gaps = 16/316 (5%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69 ++ T+ H+ VLL + + L P + +D TFG GG+SR +IA DRDP Sbjct: 1 MNDTVHKHITVLLHEAVDGLAIKPSGIYIDGTFGRGGHSRLILSKLSEQGRLIATDRDPR 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGF 125 A++ +F + FS + D G +DG++ DLGVSS Q+D +RGF Sbjct: 61 AIAEANTI---DDTRFQIVHTAFSAIPDVCEQLGLTGKIDGILLDLGVSSPQLDDAERGF 117 Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA- 183 SF + GPLDMRM + G+SA++ + Q + DL +L GEE+ A RIA A+V +SA Sbjct: 118 SFMRDGPLDMRMDTTKGLSAAEWLAQVSADDLAWVLKTFGEERFAKRIAQAVVSYNKSAT 177 Query: 184 -PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 T L+ +I V F K+ HPATRSFQA+RIF+N+E++EL + L+SA L Sbjct: 178 DKISRTLQLAQIIADAVPF-KDKHKHPATRSFQAIRIFINSELDELEKALQSALSVLAPE 236 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300 G L ++SFHSLEDR+VK+F S V ++ S + + I K ++P++ ++ Sbjct: 237 GRLSIISFHSLEDRMVKQFMKKNSKGMDVPKGLPILESELNKNIPLKIIGKAIMPSEAEI 296 Query: 301 AFNRRSRSAKLRAGMR 316 N RSRSA LR + Sbjct: 297 EANPRSRSAVLRIAEK 312 >gi|144897763|emb|CAM74627.1| Bacterial methyltransferase [Magnetospirillum gryphiswaldense MSR-1] Length = 328 Score = 373 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 139/319 (43%), Positives = 188/319 (58%), Gaps = 7/319 (2%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDP 68 + H+PVLL +V+ L P G V++D TFGAGGYS + V +DRDP Sbjct: 5 AQTPDSDSRPHIPVLLAEVVQALAPQDGDVMVDGTFGAGGYSLALLDCARIRVFGIDRDP 64 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGF 125 A++ GQ + + S+ + + + +P G VDG+ D+GVSSMQID +RGF Sbjct: 65 SAIAAGQRLPQAADGRLSVIEGRYGDMDLLLPQAGIARVDGIALDIGVSSMQIDQAERGF 124 Query: 126 SFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 SF K GPLDMRM SG SA+DVVN A+ +L I+ LGEEK A R+A AIV R PF Sbjct: 125 SFAKDGPLDMRMEQSGPSAADVVNTASEAELADIIYHLGEEKYARRVARAIVAARLDTPF 184 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 T L+++I+ V + I P+TR+FQALRI VN+E+ EL +GL +AE+ L GG L Sbjct: 185 TRTLQLANVIRGAV-RKSGDGIDPSTRTFQALRIHVNDELGELERGLEAAERLLAPGGRL 243 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITKKVVVPTQEDVAFN 303 VV+FHSLEDR+VK F RSG + A +P+ F I++K + P+ + N Sbjct: 244 AVVTFHSLEDRVVKTFLKKRSGDMPAPSRHLPAQAAGPAPTFSLISRKAIAPSDAECRAN 303 Query: 304 RRSRSAKLRAGMRTVERSI 322 R+RSAKLRA +RT Sbjct: 304 PRARSAKLRAALRTDAAPW 322 >gi|27467772|ref|NP_764409.1| hypothetical protein SE0854 [Staphylococcus epidermidis ATCC 12228] gi|30173015|sp|Q8CSX7|RSMH_STAES RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|27315316|gb|AAO04451.1|AE016746_241 conserved hypothetical protein [Staphylococcus epidermidis ATCC 12228] gi|329730036|gb|EGG66427.1| S-adenosyl-methyltransferase MraW [Staphylococcus epidermidis VCU144] gi|329736180|gb|EGG72452.1| S-adenosyl-methyltransferase MraW [Staphylococcus epidermidis VCU028] Length = 311 Score = 373 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 102/308 (33%), Positives = 163/308 (52%), Gaps = 9/308 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + HV V+L + I LN V +D T G G++ +IA+D+D A+ Sbjct: 1 MFHHVSVMLNETIDYLNIKEDGVYVDCTLGGAGHALYLLNQLNDKGRLIAIDQDLTAIEN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E ++++ + + F +L + + + + VDG+ +DLGVSS Q+D +RGFS+ Sbjct: 61 AKEVLKEHLHKVTFVHNNFRELTNILNELEIEKVDGIYYDLGVSSPQLDVPERGFSYHND 120 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM + +SA +VVNQ + + L RI GEEK + +IA I R+ P +TT Sbjct: 121 AKLDMRMDQTQSLSAYEVVNQWSYEALVRIFFRYGEEKFSKQIARRIEAHREQQPIETTL 180 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I++ + + HPA R FQA+RI VN+E+ + A + +K GG + V+ Sbjct: 181 ELVDVIKEGIPAKARRKGGHPAKRVFQAIRIAVNDELSAFEDSVEQAIECVKVGGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F R + A+ + + +K + T +D+ N R+R Sbjct: 241 TFHSLEDRLCKQIFQEFEKGPDVPRGLPVIPEAYTPKLKRVNRKPITATDDDLNENNRAR 300 Query: 308 SAKLRAGM 315 SAKLR Sbjct: 301 SAKLRVAE 308 >gi|261338924|ref|ZP_05966782.1| hypothetical protein ENTCAN_05122 [Enterobacter cancerogenus ATCC 35316] gi|288318749|gb|EFC57687.1| S-adenosyl-methyltransferase MraW [Enterobacter cancerogenus ATCC 35316] Length = 313 Score = 373 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 120/312 (38%), Positives = 181/312 (58%), Gaps = 19/312 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ Q Sbjct: 6 KHTTVLLDEAVNGLNIRPDGIYVDGTFGRGGHSRLILSQLGAEGRLLAIDRDPQAIAVAQ 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +FS+ FS L DYV ++G +DG++ DLGVSS Q+D +RGFSF + G Sbjct: 66 TI---DDPRFSIVHGPFSALADYVAERGLTGKIDGILLDLGVSSPQLDDAERGFSFMRDG 122 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + G SA++ + A+ D+ ++ GEE+ RIA AIV+R + P T++ Sbjct: 123 PLDMRMDPTRGQSAAEWLQTADEADIAWVIKTFGEERFGKRIARAIVERNRIEPMTRTKE 182 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ +I K+ HPATR+FQA+RI+VN+E+EE+ L+S+ L GG L V+SF Sbjct: 183 LAEVIAAATPV-KDKHKHPATRTFQAVRIWVNSELEEIELALKSSLDVLAPGGRLSVISF 241 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305 HSLEDR+VK+F +S + + + +++ K ++P +E+VA N R Sbjct: 242 HSLEDRIVKRFMREQSRGPQVPAGLPMTEEQLSKLGGRQLRALGK--LMPGEEEVAENPR 299 Query: 306 SRSAKLRAGMRT 317 +RS+ LR RT Sbjct: 300 ARSSVLRVAERT 311 >gi|260428345|ref|ZP_05782324.1| S-adenosyl-methyltransferase MraW [Citreicella sp. SE45] gi|260422837|gb|EEX16088.1| S-adenosyl-methyltransferase MraW [Citreicella sp. SE45] Length = 330 Score = 373 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 145/326 (44%), Positives = 201/326 (61%), Gaps = 6/326 (1%) Query: 11 SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPF 69 +A HVPVLL ++ + P +D TFGAGGYSR + G+ VI +DRDP Sbjct: 4 AADTSDNAPHVPVLLRPLLDAVAPVS-GTWVDGTFGAGGYSRGLLEAGADRVIGIDRDPL 62 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 A E + Y + L + F+ + YV G DGVV DLGVSSMQ+D +RGFSFQ+ Sbjct: 63 AHRMAAEWIGSYGGRLELVEGNFADMDQYV--SGADGVVLDLGVSSMQLDIAERGFSFQR 120 Query: 130 SGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 GPLDMRM +G SA+++V + + L +L GEE+ + RIA AIVK R+ P +TT Sbjct: 121 DGPLDMRMEQAGESAAELVKRLDETTLADVLYTYGEERASRRIARAIVKAREQEPIETTA 180 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 LS++++ + K + HPATRSFQALRI VN+E L +GL +AEKALK GG L VV+ Sbjct: 181 RLSAIVEACLPRPKPGQSHPATRSFQALRIAVNDEYGALWRGLMAAEKALKPGGFLCVVT 240 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHS+EDR+VK+F +RSG++ AV P A F ++T+K + P +++A N RSRS Sbjct: 241 FHSVEDRMVKRFLQARSGRLGAVSRYAPVVEAEEPQFVTMTRKAIGPDDDELAANPRSRS 300 Query: 309 AKLRAGMRTVERSIE-DDSFVHLPRL 333 A+LR G RT + +++P+L Sbjct: 301 ARLRIGQRTSADPGDVSPDTLNMPQL 326 >gi|330686332|gb|EGG97937.1| S-adenosyl-methyltransferase MraW [Staphylococcus epidermidis VCU121] Length = 311 Score = 373 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 98/308 (31%), Positives = 160/308 (51%), Gaps = 9/308 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H+ V+L + I LN V +D T G G++ +IA+D+D A+ Sbjct: 1 MFHHISVMLNETIDYLNIKEDGVYVDCTLGGAGHALYLLNQLSDEGRLIAIDQDLTAIEN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 ++ ++++ + + + F +L + + + VDG+ +DLGVSS Q+D +RGFS+ Sbjct: 61 AKDVLKEHLHKVTFIHSNFRELTQILNELNIEKVDGIYYDLGVSSPQLDVPERGFSYHHD 120 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM + +SA +VVN+ + L +I GEEK + +IA I R+ P +TT Sbjct: 121 AKLDMRMDQTQSLSAYEVVNEWPYEALVKIFYRYGEEKFSKQIARRIEANREKQPIETTL 180 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I++ + + HPA R FQA+RI VN+E+ + A +K G + V+ Sbjct: 181 ELVEVIKEGIPAKARRKGGHPAKRVFQAIRIAVNDELSAFEDSIEQAIGLVKVNGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F R + A+ + + +K + T ED+ N R+R Sbjct: 241 TFHSLEDRLCKQMFQEYEKGPDVPRGLPVIPEAYTPKLKRVNRKPITATDEDLDDNNRAR 300 Query: 308 SAKLRAGM 315 SAKLR Sbjct: 301 SAKLRIAE 308 >gi|157826956|ref|YP_001496020.1| S-adenosyl-methyltransferase MraW [Rickettsia bellii OSU 85-389] gi|167011836|sp|A8GVV6|RSMH_RICB8 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|157802260|gb|ABV78983.1| S-adenosyl-methyltransferase MraW [Rickettsia bellii OSU 85-389] Length = 305 Score = 373 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 127/304 (41%), Positives = 182/304 (59%), Gaps = 5/304 (1%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQE 76 H+PV+L +++ L P G+ LD TFGAGGYS++ + V ALDRDP + +E Sbjct: 3 QPHIPVMLNEMLKFLAPKAGESYLDCTFGAGGYSKALLENCDCYVTALDRDPNVIKKAEE 62 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 +YK++F + F + K DG+V DLGVSSMQ+D DRGFSF GPLDMR Sbjct: 63 IKHNYKDRFDFVETNFGNCFAKLESKKFDGIVLDLGVSSMQLDIPDRGFSFLHDGPLDMR 122 Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 MS G+SA + +N A KDL ++ G+E + RIA IV+ R++A +T L+ ++ Sbjct: 123 MSGQGLSAEEFINTAEEKDLADVIYKYGDETFSRRIAKKIVEVRKAARIDSTGKLADIVH 182 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 + F K +I PAT++FQA+RI++NNE+ EL Q L + + LK G L+VVSFHSLEDR Sbjct: 183 SCIGFRK-GKIDPATKTFQAIRIYINNELGELEQFLANVKNILKKDGRLVVVSFHSLEDR 241 Query: 257 LVKKFFASRSGKVMAVRHMIPSN---AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 +VK FF S K +A + + IT K +P+ ++++ N R+RSAKLRA Sbjct: 242 IVKNFFKENSEKPVARSKYAKEDIMLNPDKWLKIITNKAEIPSDKEISLNVRARSAKLRA 301 Query: 314 GMRT 317 + Sbjct: 302 AKKI 305 >gi|307244811|ref|ZP_07526910.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307253765|ref|ZP_07535619.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258222|ref|ZP_07539965.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306854256|gb|EFM86462.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306863249|gb|EFM95189.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867682|gb|EFM99527.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 313 Score = 373 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 118/316 (37%), Positives = 175/316 (55%), Gaps = 16/316 (5%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69 ++ T+ H+ VLL + + L P + +D TFG GG+SR +IA DRDP Sbjct: 1 MNDTVHKHITVLLHEAVDGLAIKPNGIYIDGTFGRGGHSRLILSKLSEQGRLIATDRDPR 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGF 125 A++ +F + FS + D G +DG++ DLGVSS Q+D +RGF Sbjct: 61 AIAEANTI---DDTRFQIEHTAFSAIPDVCEQLGLTGKIDGILLDLGVSSPQLDDAERGF 117 Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ--S 182 SF + GPLDMRM + G+SA++ + Q + DL +L GEE+ A RIA A+V + + Sbjct: 118 SFMRDGPLDMRMDTTKGLSAAEWLAQVSADDLAWVLKTFGEERFAKRIAQAVVSYNKSAT 177 Query: 183 APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 T L+ +I V F K+ HPATRSFQA+RIF+N+E++EL + L+SA L Sbjct: 178 NKISRTLQLAQIIADAVPF-KDKHKHPATRSFQAIRIFINSELDELEKALQSALSVLAPE 236 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300 G L ++SFHSLEDR+VK+F S V ++ S + + I K ++P++ ++ Sbjct: 237 GRLSIISFHSLEDRMVKQFMKKNSKGMDVPKGLPILESELNKNIPLKIIGKAIMPSEAEI 296 Query: 301 AFNRRSRSAKLRAGMR 316 N RSRSA LR + Sbjct: 297 EANPRSRSAVLRIAEK 312 >gi|303240801|ref|ZP_07327314.1| S-adenosyl-methyltransferase MraW [Acetivibrio cellulolyticus CD2] gi|302591689|gb|EFL61424.1| S-adenosyl-methyltransferase MraW [Acetivibrio cellulolyticus CD2] Length = 313 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 104/309 (33%), Positives = 165/309 (53%), Gaps = 11/309 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 +H PVL E+ I L+ P V +D T G G+S + + +I LD+D FA+ + Sbjct: 4 EHKPVLFEECIENLDIKPDGVYVDGTLGGAGHSSAIYQKLGEKGMLIGLDQDGFALETSK 63 Query: 76 ETMRDYKEQ--FSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + D + F ++ + VDG++ DLGVSS Q+D +RGFS+ K Sbjct: 64 KRLEDQNGKGSLIFANTNFVNIKSVCFENKIACVDGILLDLGVSSHQLDEAERGFSYNKD 123 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM +A +VN+ + +++ +I+ GEE ASRIA IV+RR +TT Sbjct: 124 APLDMRMDRRQKFTAETIVNEYSKEEIKKIIREFGEENWASRIAEFIVQRRDEKRIETTG 183 Query: 190 DLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I+ + ++ HPA R+FQALRI VN+E+ L++ + LK GG ++ Sbjct: 184 ELVEIIKAAIPSSARREGPHPAKRTFQALRIAVNDELGILSKAIEEGVNLLKPGGRFCII 243 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+VK F + + +S+ +K +VP+ +++ N R+R Sbjct: 244 TFHSLEDRIVKNEFNKYINPCTCPSTFPVCVCGKKKLAESVHRKPIVPSVKELEENPRAR 303 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 304 SAKLRVLEK 312 >gi|299131933|ref|ZP_07025128.1| S-adenosyl-methyltransferase MraW [Afipia sp. 1NLS2] gi|298592070|gb|EFI52270.1| S-adenosyl-methyltransferase MraW [Afipia sp. 1NLS2] Length = 333 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 144/330 (43%), Positives = 201/330 (60%), Gaps = 5/330 (1%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAV 71 + H+ VL + + L P G + +DATFGAGGYS+ + G+ VI +DRD AV Sbjct: 1 MSTASSRHISVLGREAVEFLAPHAGGIYVDATFGAGGYSKRILEVAGTRVIGIDRDRTAV 60 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQ 128 + + + + + ++ Q FS L + +G VDG+V D+GVSSMQ+D +RGFSF+ Sbjct: 61 AEAFDLVERAEGRLTVVQDRFSNLAEVCAAEGAPQVDGIVMDIGVSSMQLDRAERGFSFR 120 Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 G LDMRM G SA+DVV A+ KDL I+ I GEE+ + +A AIVK RQ P TT Sbjct: 121 HDGALDMRMGQEGASAADVVAVASEKDLANIIYIFGEERHSRAVARAIVKARQDNPIVTT 180 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 + L+ ++ V ++ N IHPATR+FQALRIF+N E++EL L ++E+ALK GG L+VV Sbjct: 181 KALADIVSSVV-RARPNEIHPATRTFQALRIFINEELDELQTALHASERALKPGGRLVVV 239 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDR+VK F ASR+ + RH+ F+ +TK+ VV + A N R+RS Sbjct: 240 SFHSLEDRIVKNFLASRAKQGGGSRHLPEVEQIAPSFEILTKRPVVANDNETAVNPRARS 299 Query: 309 AKLRAGMRTVERSIEDDSFVHLPRLPTLSQ 338 AKLRA RT S +D P L ++ + Sbjct: 300 AKLRAAQRTANPSHHEDMSFDWPTLRSVMK 329 >gi|315918163|ref|ZP_07914403.1| S-adenosyl-methyltransferase mraW [Fusobacterium gonidiaformans ATCC 25563] gi|313692038|gb|EFS28873.1| S-adenosyl-methyltransferase mraW [Fusobacterium gonidiaformans ATCC 25563] Length = 318 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 110/320 (34%), Positives = 179/320 (55%), Gaps = 12/320 (3%) Query: 9 MSSAIHHTIGD--HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIA 63 M IG+ H+PVL E+ + L P + +D T G G +S K +I+ Sbjct: 1 MGEKDMQEIGNEYHIPVLYEETLDQLVWNPDGIYIDCTLGGGSHSEGILKRLSEKGRLIS 60 Query: 64 LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ--DYVPD-KGVDGVVFDLGVSSMQIDC 120 +D+D A++ ++ + + +Q+S+FQ F + Y+ VDG++ D+GVSS Q+D Sbjct: 61 IDQDANAIAFCKKRLEKHGKQWSVFQNNFENIDIVSYLAGVDKVDGILMDIGVSSTQLDD 120 Query: 121 GDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 G+RGFS++ LDMRM+ +SA +VVN +DL RIL GEE+ A +IA I + Sbjct: 121 GERGFSYRYDAKLDMRMNKEQDLSAYEVVNTYAEQDLVRILFEYGEERHAKKIASFICEN 180 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 R+ P +TT +L ++I++ +S+ HPA ++FQA+RI VN E+E L + ++ + L Sbjct: 181 RKEKPIETTGELVAIIKRA--YSERASKHPAKKTFQAIRIEVNRELEVLEKAIQKSVDLL 238 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQE 298 K G L +++FHSLEDRLVK F + + A + +TKK ++P+++ Sbjct: 239 KPKGHLAIITFHSLEDRLVKTVFKDLATACKCPPELPVCVCGGKAKVKILTKKPIIPSED 298 Query: 299 DVAFNRRSRSAKLRAGMRTV 318 ++ N R+ S+KLR R Sbjct: 299 ELGKNNRAHSSKLRVVERLA 318 >gi|222153542|ref|YP_002562719.1| S-adenosyl-methyltransferase MraW [Streptococcus uberis 0140J] gi|262825652|sp|B9DV78|RSMH_STRU0 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|222114355|emb|CAR43080.1| S-adenosyl-methyltransferase MraW [Streptococcus uberis 0140J] Length = 316 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 103/320 (32%), Positives = 168/320 (52%), Gaps = 15/320 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M+ H H+ VLL + + +L+ P + +DAT G G+S ++ D Sbjct: 1 MTKEFH-----HITVLLHETVDMLDIKPDGIYVDATLGGAGHSSYLLSKLNDNGHLYCFD 55 Query: 66 RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120 +D A+ Q ++ Y ++ + +A F L+ + GV DG+++DLGVSS Q+D Sbjct: 56 QDQKAIDNAQVFLKSYVDRGMVTFIKANFRHLKSELNALGVTEIDGILYDLGVSSPQLDE 115 Query: 121 GDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS+++ PLDMRM ++A VVN +DL RI GE+K + +IA I + Sbjct: 116 RERGFSYKQDAPLDMRMDSDAALTAYHVVNDYPFQDLVRIFFKYGEDKFSKQIARKIEQA 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R P +TT +L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A Sbjct: 176 RAIKPIETTAELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQEAMTM 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L G + V++FHSLEDRL K+ F S + F+ +T+K ++P+QE Sbjct: 236 LALNGRISVITFHSLEDRLTKQLFKEASTVDVPKGIPFIPEDMQPKFELVTRKPILPSQE 295 Query: 299 DVAFNRRSRSAKLRAGMRTV 318 ++ N R+ SAKLR + Sbjct: 296 ELLANNRAHSAKLRVARKVR 315 >gi|171913327|ref|ZP_02928797.1| S-adenosyl-methyltransferase MraW [Verrucomicrobium spinosum DSM 4136] Length = 331 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 132/304 (43%), Positives = 178/304 (58%), Gaps = 9/304 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+PVL +V+A L PAPGKVILD T G GG++ + G+ VI LD+D A+S E ++ Sbjct: 27 HLPVLPAEVVAALAPAPGKVILDGTLGGGGHTSLLLQAGAEVIGLDQDTDALSHAGERLK 86 Query: 80 DYK--EQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 Y QF Q+ F + G+ DG++ DLGVSS Q+D RGFSF GPLD Sbjct: 87 AYAATGQFRSVQSNFRDFPAVLQALGITALDGLLVDLGVSSYQLDVASRGFSFMHEGPLD 146 Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM+ G +A+D+VN+ +L RIL GEE+Q+ RI A+V+RR+ PF TT DL+S Sbjct: 147 MRMNTGGGRTAADLVNEDEPAELERILWEYGEERQSRRIVRALVQRREQRPFTTTSDLAS 206 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 I + + + HPAT +FQ LRI VN+E+ LA L +A LK GG L V+SFHSL Sbjct: 207 AIAGVIP--RRGKTHPATLTFQGLRIAVNDELAALADFLHAAPAWLKPGGRLAVISFHSL 264 Query: 254 EDRLVKKFFASRSGKVM-AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 EDR+VK+ F S + + P + + +K T E+V N RSRSAKLR Sbjct: 265 EDRMVKQAFQRLSTEWLDRPEWPEPRRNPEHCLRLLHRKPQEATDEEVKRNPRSRSAKLR 324 Query: 313 AGMR 316 + Sbjct: 325 TAEK 328 >gi|282882847|ref|ZP_06291452.1| S-adenosyl-methyltransferase MraW [Peptoniphilus lacrimalis 315-B] gi|281297258|gb|EFA89749.1| S-adenosyl-methyltransferase MraW [Peptoniphilus lacrimalis 315-B] Length = 320 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 117/317 (36%), Positives = 177/317 (55%), Gaps = 10/317 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 HV VL +V+ LN K+ +DAT G G+S+ K+ +N +I +D+D A+ Q Sbjct: 4 KHVSVLYNEVLENLNIRENKIYMDATIGGAGHSKGIAKILNNSGLLIGIDQDKDAIKKSQ 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + +Y E LF + ++ + K VDG++ DLGVSS Q D G+RGFS++ Sbjct: 64 EVLSEY-ENVKLFNTNYKNFEEILDSLHIKKVDGILLDLGVSSYQFDKGERGFSYRFDSE 122 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S ++A +VN+ + +L RI+ GEE A RI+ IV+ R+ TT DL Sbjct: 123 LDMRMDKSSPLTAKTIVNEYSKDELYRIIKEYGEENWAKRISEFIVQERKIKKINTTFDL 182 Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+K V ++ + HPA R+FQALRI VN+E+ L + + + L GG L ++SF Sbjct: 183 VEVIKKAVPKGARRDGPHPAKRAFQALRIEVNDELNVLKKSIYKFVERLNPGGRLAIISF 242 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK F + +I + + IT+K +VPT+E++ N RS SA Sbjct: 243 HSLEDRIVKNAFRYLYSDCVCPPEQIICTCDKKREIEIITRKPIVPTKEEIKNNNRSHSA 302 Query: 310 KLRAGMRTVERSIEDDS 326 KLR + E+++ Sbjct: 303 KLRVAEKLEVSHDEENN 319 >gi|257791849|ref|YP_003182455.1| S-adenosyl-methyltransferase MraW [Eggerthella lenta DSM 2243] gi|257475746|gb|ACV56066.1| S-adenosyl-methyltransferase MraW [Eggerthella lenta DSM 2243] Length = 318 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 117/311 (37%), Positives = 179/311 (57%), Gaps = 14/311 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H PVLL + + N P +DAT G G+S K+ G +I +D+D A++ + Sbjct: 7 HTPVLLAECLEYSNLKPQHTFVDATLGGAGHSFEAAKLIGSGGTLIGIDQDEVALAAARR 66 Query: 77 TM----RDYKEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 + D + + L + F + + + GVD V+FDLGVSS+QID RGFSF++ Sbjct: 67 KLGTLPDDVRPRLELVRGNFGNMDEALLSTEVPGVDAVLFDLGVSSVQIDTPSRGFSFKE 126 Query: 130 SGPLDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 +GPLDMRM ++A++++N DLTRI+ +EK ASRIA V+ RQ+AP +T Sbjct: 127 NGPLDMRMDPGKQTLTAAEIINTYTAADLTRIIRTYSDEKWASRIADFAVRARQTAPIET 186 Query: 188 TQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 ++ L +I+ + ++ HPA R+FQALRI VN E++ L GL +A + L GG L+ Sbjct: 187 SEQLVDIIKAAIPASARRAGGHPAKRTFQALRIEVNGELDVLRSGLDAAIRWLNPGGRLV 246 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V+S+HSLEDR+VK+ FA + + + + +T+K V+PT E++ N R Sbjct: 247 VISYHSLEDRIVKETFAKFANRCTCPPDLPVCMCGKQPILDIVTRKPVLPTAEEIERNAR 306 Query: 306 SRSAKLRAGMR 316 +RSAKLR + Sbjct: 307 ARSAKLRVAQK 317 >gi|225375622|ref|ZP_03752843.1| hypothetical protein ROSEINA2194_01247 [Roseburia inulinivorans DSM 16841] gi|225212601|gb|EEG94955.1| hypothetical protein ROSEINA2194_01247 [Roseburia inulinivorans DSM 16841] Length = 312 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 102/309 (33%), Positives = 173/309 (55%), Gaps = 10/309 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQ 75 +H VLL + I LN P + +D T G GG++ +I +D+D A++ Sbjct: 4 NHYSVLLNETIENLNIKPDGIYVDGTLGGGGHAYQVASRLSEKGRLIGIDQDADAIAAAG 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQ-KSG 131 E ++++ ++ ++ ++ ++ +++ + GV DG+V DLGVSS Q+D +RGF+++ ++ Sbjct: 64 ERLKEFGDKITIIRSNYANMKEELHRIGVEKVDGIVLDLGVSSFQLDTLERGFTYRDENA 123 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM ++A D+VN + DL RI+ GE+K A IA IV+ R P +TT + Sbjct: 124 PLDMRMDDRQSLTAKDIVNGYSEMDLYRIIRDYGEDKFAKNIAKHIVQERAKKPIETTGE 183 Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+ ++ + HPA R+FQA+RI +N E+E L L L GG + +++ Sbjct: 184 LTEIIRASIPMKVQVTGGHPAKRTFQAIRIELNKELEVLQNNLDDMIDLLNPGGRICIIT 243 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK F + + + +T+K ++P++E++ N RS+S Sbjct: 244 FHSLEDRIVKTNFKRNENPCTCPSDFPVCVCGKKSKGKVVTRKPILPSEEELEVNSRSKS 303 Query: 309 AKLRAGMRT 317 AKLR R Sbjct: 304 AKLRVFERV 312 >gi|15902346|ref|NP_357896.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae R6] gi|116515442|ref|YP_815821.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae D39] gi|225853917|ref|YP_002735429.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae JJA] gi|30315982|sp|P59658|RSMH_STRR6 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|122279293|sp|Q04MC7|RSMH_STRP2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262825666|sp|C1CCA8|RSMH_STRZJ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|1524350|emb|CAB01927.1| OrfD [Streptococcus pneumoniae] gi|15457856|gb|AAK99106.1| YllC protein [Streptococcus pneumoniae R6] gi|116076018|gb|ABJ53738.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae D39] gi|225724201|gb|ACO20054.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae JJA] Length = 316 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 106/319 (33%), Positives = 170/319 (53%), Gaps = 15/319 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M+ H HV VLL + I +L+ P + +DAT G G+S ++ A D Sbjct: 1 MTKEFH-----HVTVLLHETIDMLDVKPEGIYVDATLGGAGHSEYLLSKLSEKGHLYAFD 55 Query: 66 RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120 +D A+ Q+ + Y E+ + + F LQ + + GV DG+ +DLGVSS Q+D Sbjct: 56 QDQNAIDNAQKRLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQ 115 Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS++K PLDMRM+ ++A +VVN + DL RI GE+K + +IA I + Sbjct: 116 RERGFSYKKDAPLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQA 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R+ P +TT +L+ +I+ + + HPA + FQA+RI VN+E+ + ++ A Sbjct: 176 REVKPIETTTELAEIIKLVKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDM 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L G + V++FHSLEDRL K+ F S + + + +++K ++P+ E Sbjct: 236 LALDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAE 295 Query: 299 DVAFNRRSRSAKLRAGMRT 317 ++ N RS SAKLR + Sbjct: 296 ELEANNRSHSAKLRVVRKI 314 >gi|251810609|ref|ZP_04825082.1| S-adenosyl-methyltransferase [Staphylococcus epidermidis BCM-HMP0060] gi|282876390|ref|ZP_06285257.1| S-adenosyl-methyltransferase MraW [Staphylococcus epidermidis SK135] gi|251805769|gb|EES58426.1| S-adenosyl-methyltransferase [Staphylococcus epidermidis BCM-HMP0060] gi|281295415|gb|EFA87942.1| S-adenosyl-methyltransferase MraW [Staphylococcus epidermidis SK135] gi|329734446|gb|EGG70759.1| S-adenosyl-methyltransferase MraW [Staphylococcus epidermidis VCU045] Length = 311 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 102/308 (33%), Positives = 163/308 (52%), Gaps = 9/308 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + HV V+L + I LN V +D T G G++ +IA+D+D A+ Sbjct: 1 MFHHVSVMLNETIDYLNIKEDGVYVDCTLGGAGHALYLLNQLNDKGRLIAIDQDLTAIEN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E ++++ + + F +L + + + + VDG+ +DLGVSS Q+D +RGFS+ Sbjct: 61 AKEVLKEHLHKVTFVHNNFRELTNILNELEIEKVDGIYYDLGVSSPQLDVPERGFSYHND 120 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM + +SA +VVNQ + + L RI GEEK + +IA I R+ P +TT Sbjct: 121 AKLDMRMDQTQSLSAYEVVNQWSYEALVRIFFRYGEEKFSKQIARRIEAHREQQPIETTL 180 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I++ + + HPA R FQA+RI VN+E+ + A + +K GG + V+ Sbjct: 181 ELVDVIKEGIPAKARRKGGHPAKRVFQAIRIAVNDELSAFEDSVEQAIECVKVGGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F R + A+ + + +K + T +D+ N R+R Sbjct: 241 TFHSLEDRLCKQIFQEFEKGPDVPRGLPVIPEAYTPKLKRVNRKPITATDDDLNDNNRAR 300 Query: 308 SAKLRAGM 315 SAKLR Sbjct: 301 SAKLRVAE 308 >gi|296329280|ref|ZP_06871781.1| S-adenosyl-methyltransferase MraW [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296153636|gb|EFG94453.1| S-adenosyl-methyltransferase MraW [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 314 Score = 372 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 106/308 (34%), Positives = 172/308 (55%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+PVL + + L P +D T G G +S + S+ +I++D+D A+ ++ Sbjct: 9 HIPVLYYETLDNLVINPDGTYIDCTLGGGSHSEGILERLSDKGLLISIDQDTNAIVYSKK 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + ++ +F+ F + GVD G++ D+GVSS Q+D +RGFS++ L Sbjct: 69 RLEKFGSKWKVFKGNFENIDTIAYMAGVDKVDGILMDIGVSSKQLDDPERGFSYRYDVKL 128 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ ISA DVVN + + L++I+ GEE+ A +IA IV+ R+S+P + T DL Sbjct: 129 DMRMNTDQKISAYDVVNTYSEEQLSKIIFEYGEERHARKIAKLIVEERKSSPIEKTSDLI 188 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +LI++ + HPA ++FQA+RI VN E+E L + A + LK GG L +++FHS Sbjct: 189 ALIKRAYP--ERASKHPAKKTFQAIRIEVNRELEVLENAMSKATELLKVGGRLAIITFHS 246 Query: 253 LEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK F + + I F+ ITKK ++P +++ N R+ S+KL Sbjct: 247 LEDRIVKNKFKDLATACKCPKDIPICVCGGVKKFEVITKKPIIPIDDELKNNNRAHSSKL 306 Query: 312 RAGMRTVE 319 R R ++ Sbjct: 307 RILERILD 314 >gi|256545404|ref|ZP_05472767.1| S-adenosyl-methyltransferase MraW [Anaerococcus vaginalis ATCC 51170] gi|256398965|gb|EEU12579.1| S-adenosyl-methyltransferase MraW [Anaerococcus vaginalis ATCC 51170] Length = 306 Score = 372 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 114/306 (37%), Positives = 166/306 (54%), Gaps = 12/306 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H VLL + I LN + D T G GG+S+ K S +I LD+D A+ +E Sbjct: 5 HKSVLLNETIENLNIKEDGIYADLTLGKGGHSKEILKKLSPNGLLIGLDQDKDAIKAARE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++D+ F F +++ + + G +DG + D+GVSS QID GDRGFS+ K GPL Sbjct: 65 NLKDF-SNVLYFNENFENIENVLDEAGFNRIDGALMDIGVSSYQIDNGDRGFSYMKDGPL 123 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ + ++A +VN ++ +L +I GEE+ + IA AIV R+ TT L Sbjct: 124 DMRMNKDNELTAKQIVNDYSLDELWKIFSEYGEERYSKTIAKAIVDYRKMHEINTTLQLR 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +++ K+V S+ HP R FQALRI VN E+E L L L G L V++FHS Sbjct: 184 NIVMKSVNTSEA---HPEKRVFQALRIEVNRELEVLENTLEKIVDRLNKNGRLCVITFHS 240 Query: 253 LEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK F S K + + H + I+KK ++P+++++ N RS SAKL Sbjct: 241 LEDRIVKNKFKEMSKKCICPPDFPVCVCNHEKKVKLISKKPILPSKDELKNNNRSHSAKL 300 Query: 312 RAGMRT 317 R R Sbjct: 301 RVCERI 306 >gi|223043777|ref|ZP_03613820.1| S-adenosyl-methyltransferase MraW [Staphylococcus capitis SK14] gi|222442874|gb|EEE48976.1| S-adenosyl-methyltransferase MraW [Staphylococcus capitis SK14] Length = 311 Score = 372 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 99/308 (32%), Positives = 160/308 (51%), Gaps = 9/308 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + HV V+L + I LN V +D T G G++ +IA+D+D A+ Sbjct: 1 MFHHVSVMLNETIDYLNIKEDGVYVDCTLGGAGHALYLLNQLNDEGRLIAIDQDLTALEN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + ++++ + + F +L + + D + VDG+ +DLGVSS Q+D +RGFS+ Sbjct: 61 AKVVLKEHLHKVTFVHNNFRELTNILKDLNIEKVDGIYYDLGVSSPQLDVPERGFSYHHD 120 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM + +SA +VVN+ + + L +I GEEK + +IA I R+ P +TT Sbjct: 121 AKLDMRMDQTQSLSAYEVVNEWSYEALVKIFYRYGEEKFSKQIARRIEANREQHPIETTL 180 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L +I++ + + HPA R FQA+RI VN+E+ + A +++ G + V+ Sbjct: 181 QLVDIIKEGIPAKARRKGGHPAKRVFQAIRIAVNDELSAFEDSIEQAIESVNVNGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F R I + + + +K + T+ED+ N R+R Sbjct: 241 TFHSLEDRLCKQIFQEYEKGPEVPRGIPIIPEGYSPKLKRVNRKPITATEEDLDENNRAR 300 Query: 308 SAKLRAGM 315 SAKLR Sbjct: 301 SAKLRVAE 308 >gi|229815097|ref|ZP_04445434.1| hypothetical protein COLINT_02139 [Collinsella intestinalis DSM 13280] gi|229809327|gb|EEP45092.1| hypothetical protein COLINT_02139 [Collinsella intestinalis DSM 13280] Length = 325 Score = 372 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 113/309 (36%), Positives = 173/309 (55%), Gaps = 12/309 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H PV+L++V+ L PG V+ D T G G+S + + ++ +D+D A++ + Sbjct: 16 HEPVMLQEVLEQLQLKPGSVVCDCTLGGAGHSVRMAERVGSEGLLLGVDQDDMALAAAGK 75 Query: 77 TM--RDYKEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + L + F L + + GVDG +FDLGVSS Q+D RGFS+ + Sbjct: 76 RLDAEAPDTPHKLLKGNFGDLDELLCSAQVPGVDGFLFDLGVSSPQLDIPGRGFSYNEDA 135 Query: 132 PLDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM + ++A++V+N DL RIL I GEEK A +IA +V+RRQ +P +T Sbjct: 136 PLDMRMDPGTNTLNAAEVLNTYTEADLARILRIYGEEKFARQIAREVVRRRQESPLVSTG 195 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 D I+ + + + + HPA RSFQA+RI VN+E++ L +GL +A + L GG + V+ Sbjct: 196 DFVDAIKAGIPAAARRHGGHPAKRSFQAIRIEVNHELDVLERGLEAAIRWLNPGGRVCVI 255 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 S+HSLEDR+VK+ F S + + + + T+K +V T E+V N R+R Sbjct: 256 SYHSLEDRIVKRLFQELSKGCTCPPDIPVCVCGNVPIVKVTTRKPLVATAEEVERNPRAR 315 Query: 308 SAKLRAGMR 316 SAK+R R Sbjct: 316 SAKIRCAER 324 >gi|42559481|sp|Q8GE08|RSMH_HELMO RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|27262272|gb|AAN87417.1| methyltransferase [Heliobacillus mobilis] Length = 312 Score = 372 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 116/309 (37%), Positives = 179/309 (57%), Gaps = 10/309 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H+PVLLE+V+ L P P + LD T G GG+S + + +I LD+DP A++ + Sbjct: 4 HHIPVLLEEVLEALQPRPDGLYLDGTVGGGGHSAAILEKTAGQGRLIGLDQDPRALAAAR 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + +Q +L ++ F QL V + G +DG++ D+GVSS Q+D +RGF+++ Sbjct: 64 IKLEKFADQVTLVRSNFRQLGSVVEELGQKGKIDGILLDIGVSSHQLDEAERGFTYRAEA 123 Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ G ++A+ ++N+ ++ RIL GEE+ + RIA IV RR P +T D Sbjct: 124 PLDMRMNPDGAVTAAQILNEYPEGEIFRILWEYGEERWSKRIAQFIVNRRTEQPLASTTD 183 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I+ + + HPA R+FQALRI VN+E+ L + L +A AL G L V+S Sbjct: 184 LVDVIRAAIPAAARQEGGHPAKRTFQALRIAVNDELGALQEALPAALDALAPSGRLAVIS 243 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK FFA ++ + A + IT+K + ++E++ N RS+S Sbjct: 244 FHSLEDRIVKNFFAEQAKGCTCPPDMPVCGCGKKARLKIITRKPITGSEEELKINPRSQS 303 Query: 309 AKLRAGMRT 317 AKLR + Sbjct: 304 AKLRVAQKI 312 >gi|148257427|ref|YP_001242012.1| S-adenosyl-methyltransferase MraW [Bradyrhizobium sp. BTAi1] gi|263445839|sp|A5EPL2|RSMH_BRASB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|146409600|gb|ABQ38106.1| S-adenosyl-dependent methyl transferase [Bradyrhizobium sp. BTAi1] Length = 331 Score = 372 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 146/332 (43%), Positives = 196/332 (59%), Gaps = 9/332 (2%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRD 67 MS+A HVPVL + +A+L P G +DATFGAGGY+R + G+ VI +DRD Sbjct: 1 MSTADP----RHVPVLGPEAVAMLAPREGGTYIDATFGAGGYTRLILQSPGTRVIGIDRD 56 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRG 124 A++ G + + + +L + FS + D G VDG+V D+GVSSMQ+D RG Sbjct: 57 STAIAGGAALVAEAGARLTLVENRFSAIADICASLGLSQVDGIVMDVGVSSMQLDSAARG 116 Query: 125 FSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 FSF+ GPLDMRM +G +A+DVV QA +DL I+ I GEE+ + +A AIV R+ P Sbjct: 117 FSFRFDGPLDMRMGETGPTAADVVAQAAERDLADIIYIFGEERHSRAVARAIVAARKEQP 176 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 TT+ L+ ++ + V SK IHPATR+FQ LRI VN E++EL Q L +AE+ L GG Sbjct: 177 ITTTRQLADIVARVV-RSKPGDIHPATRTFQGLRILVNEELDELEQALSAAEQVLAPGGR 235 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 L VVSFHSLEDR+VK F A RS RH+ FQ + +K VV Q ++ N Sbjct: 236 LAVVSFHSLEDRIVKTFLAERSKTGGGSRHLPEIAQETPTFQLLNRKPVVADQSEIEANP 295 Query: 305 RSRSAKLRAGMRTVERSIEDDSFVHLPRLPTL 336 R+RSAKLR RT + + PRL + Sbjct: 296 RARSAKLRGAERTAAPARLPPASSSWPRLADV 327 >gi|319408832|emb|CBI82489.1| S-adenosyl-methyltransferase [Bartonella schoenbuchensis R1] Length = 356 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 166/332 (50%), Positives = 222/332 (66%), Gaps = 6/332 (1%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCG 74 + H+PVLL+ V+A L P G ++D TFGAGGY+R+ G++VIALDRDP A+ G Sbjct: 23 NETESHIPVLLQPVLAALVPLAGAKVIDGTFGAGGYTRALLDAGADVIALDRDPHAIREG 82 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 Q + + + L Q FSQL D V ++ VD V+ D+GVSSMQ+D +RGFSFQK GPLD Sbjct: 83 QLLVDQFFPRLRLVQMEFSQL-DCVVEEKVDAVILDIGVSSMQLDEAERGFSFQKDGPLD 141 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRM+ +G +ASDVVN V +L+ + +LGEE+ A RIA I KRR+ PF T DL++ Sbjct: 142 MRMAQTGFTASDVVNCLKVNELSHMFRVLGEERHAGRIARMIEKRRRIRPFLRTCDLANA 201 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 I+ V +RIHPATR FQALRI+VN+E+ EL +GL +AEK LKAGG L VVSFHSLE Sbjct: 202 IEVLVGRKPGDRIHPATRVFQALRIYVNDELGELTRGLLAAEKVLKAGGRLGVVSFHSLE 261 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 DR+VKKFF++RSG+ R++ + PA F + K V +E+V N R+RSAKLR G Sbjct: 262 DRIVKKFFSARSGEGGRSRYLPEIKSSPATFLPLFKGVKTANEEEVQKNPRARSAKLRVG 321 Query: 315 MRTVE---RSIED--DSFVHLPRLPTLSQFRG 341 +RT E R+ ED + + L L ++ F+G Sbjct: 322 IRTQEDVIRTQEDVIKADMELFGLAEITSFKG 353 >gi|117620544|ref|YP_858331.1| S-adenosyl-methyltransferase MraW [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|263446603|sp|A0KPY0|RSMH_AERHH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|117561951|gb|ABK38899.1| S-adenosyl-methyltransferase MraW [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 312 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 120/313 (38%), Positives = 175/313 (55%), Gaps = 14/313 (4%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSC 73 +H+ VLL + + L P + +D TFG GG+SR + +IA+DRDP A++ Sbjct: 4 AAEHITVLLHEAVEGLAIKPDGIYVDGTFGRGGHSRLILQQLGPNGRLIAIDRDPQAIA- 62 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQK 129 E + +F + FS + Y+ ++G VDG + DLGVSS Q+D +RGFSF K Sbjct: 63 --EAAKIQDPRFEIVHGPFSGIASYLDERGLLGKVDGFLLDLGVSSPQLDDAERGFSFMK 120 Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM SG SA++ + +A+V D+ +L GEE+ A +IA AIV R + P+ T Sbjct: 121 DGPLDMRMDPTSGQSAAEWLARADVDDIAWVLKTFGEERFAKKIARAIVHDRVTEPYVRT 180 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 + L+ +I + SK H ATRSFQA+RI++N+E++E+ L A + L G L V+ Sbjct: 181 RQLAEMIARVNP-SKEKGKHAATRSFQAIRIYINSELDEIETALNGALQVLAPEGRLSVI 239 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI--TKKVVVPTQEDVAFNRRS 306 SFHSLEDRLVK F + + A A + + K + P++ +V N RS Sbjct: 240 SFHSLEDRLVKHFIRKHEKGPEVPHGIPLTEAQLAGGRKLKSVGKALKPSEHEVNENSRS 299 Query: 307 RSAKLRAGMRTVE 319 RS+ LR R E Sbjct: 300 RSSVLRVAQRLAE 312 >gi|325829899|ref|ZP_08163357.1| S-adenosyl-methyltransferase MraW [Eggerthella sp. HGA1] gi|325488066|gb|EGC90503.1| S-adenosyl-methyltransferase MraW [Eggerthella sp. HGA1] Length = 318 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 117/311 (37%), Positives = 179/311 (57%), Gaps = 14/311 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H PVLL + + N P +DAT G G+S K+ G +I +D+D A++ + Sbjct: 7 HTPVLLAECLEYSNLKPQHTFVDATLGGAGHSFEAAKLIGSGGTLIGIDQDEVALAAARL 66 Query: 77 TM----RDYKEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 + D + + L + F + + + GVD V+FDLGVSS+QID RGFSF++ Sbjct: 67 KLGTLPDDVRPRLELVRGNFGNMDEALLSTEVPGVDAVLFDLGVSSVQIDTPSRGFSFKE 126 Query: 130 SGPLDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 +GPLDMRM ++A++++N DLTRI+ +EK ASRIA V+ RQ+AP +T Sbjct: 127 NGPLDMRMDPGKQTLTAAEIINTYTAADLTRIIRTYSDEKWASRIADFAVRARQNAPIET 186 Query: 188 TQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 ++ L +I+ + ++ HPA R+FQALRI VN E++ L GL +A + L GG L+ Sbjct: 187 SEQLVDIIKAAIPASARRAGGHPAKRTFQALRIEVNGELDVLRSGLDAAIRWLNPGGRLV 246 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V+S+HSLEDR+VK+ FA + + + + +T+K V+PT E++ N R Sbjct: 247 VISYHSLEDRIVKETFAKFANRCTCPPDLPVCMCGKQPILDIVTRKPVLPTAEEIERNAR 306 Query: 306 SRSAKLRAGMR 316 +RSAKLR + Sbjct: 307 ARSAKLRVAQK 317 >gi|117622368|ref|YP_851281.1| S-adenosyl-methyltransferase MraW [Escherichia coli APEC O1] gi|331640535|ref|ZP_08341683.1| S-adenosyl-methyltransferase MraW [Escherichia coli H736] gi|331645192|ref|ZP_08346303.1| S-adenosyl-methyltransferase MraW [Escherichia coli M605] gi|331650979|ref|ZP_08352007.1| S-adenosyl-methyltransferase MraW [Escherichia coli M718] gi|331671601|ref|ZP_08372399.1| S-adenosyl-methyltransferase MraW [Escherichia coli TA280] gi|331680655|ref|ZP_08381314.1| S-adenosyl-methyltransferase MraW [Escherichia coli H591] gi|115511492|gb|ABI99566.1| S-adenosyl-methyltransferase [Escherichia coli APEC O1] gi|331040281|gb|EGI12488.1| S-adenosyl-methyltransferase MraW [Escherichia coli H736] gi|331045949|gb|EGI18068.1| S-adenosyl-methyltransferase MraW [Escherichia coli M605] gi|331051433|gb|EGI23482.1| S-adenosyl-methyltransferase MraW [Escherichia coli M718] gi|331071446|gb|EGI42803.1| S-adenosyl-methyltransferase MraW [Escherichia coli TA280] gi|331072118|gb|EGI43454.1| S-adenosyl-methyltransferase MraW [Escherichia coli H591] Length = 346 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 118/312 (37%), Positives = 179/312 (57%), Gaps = 19/312 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ + Sbjct: 39 KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK 98 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +FS+ FS L +YV ++ +DG++ DLGVSS Q+D +RGFSF + G Sbjct: 99 TI---DDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDG 155 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + G SA++ + A D+ +L GEE+ A RIA AIV+R + P T++ Sbjct: 156 PLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKE 215 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L ++SF Sbjct: 216 LAEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISF 274 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305 HSLEDR+VK+F S + + +++ K ++P +E+VA N R Sbjct: 275 HSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGK--LMPGEEEVAENPR 332 Query: 306 SRSAKLRAGMRT 317 +RS+ LR RT Sbjct: 333 ARSSVLRIAERT 344 >gi|149910619|ref|ZP_01899257.1| S-adenosyl-methyltransferase [Moritella sp. PE36] gi|149806347|gb|EDM66322.1| S-adenosyl-methyltransferase [Moritella sp. PE36] Length = 313 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 127/307 (41%), Positives = 185/307 (60%), Gaps = 11/307 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 HV VLL + +A L+ P + +D TFG GG+SR +IA+DRDP A++ G E Sbjct: 7 HVSVLLNETVAGLDLKPDGIYIDGTFGRGGHSRFILSQLGENGRLIAIDRDPEAIAVG-E 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 ++ +F + FS + DY+ +KG +DGV+ DLGVSS Q+D RGFSF + GP Sbjct: 66 ALKLEDPRFDIVHGPFSGIADYMENKGLTGHIDGVLLDLGVSSPQLDDASRGFSFLRDGP 125 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM SGISA+ + A+ D+ +L + GEE+ A +IA A+V R PF+TT L Sbjct: 126 LDMRMDPTSGISAAKWLATADYDDIVWVLKVFGEERFARKIARAVVFDRDDKPFETTSQL 185 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +SLI + V SK HPATRSFQA+RI++N+E+EE+ + L A + LK+GG L V+SFH Sbjct: 186 ASLICRVVPKSKKETKHPATRSFQAIRIYINSELEEIERALAGALQCLKSGGRLSVISFH 245 Query: 252 SLEDRLVKKFFAS--RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK+F R +V ++ K++ P+++++ N R+RS+ Sbjct: 246 SLEDRIVKQFIRKQARGKEVPYGLPIMQEEIDKTRTMKAIGKMLKPSEDELELNPRARSS 305 Query: 310 KLRAGMR 316 LR + Sbjct: 306 VLRVAEK 312 >gi|332704509|ref|ZP_08424597.1| Ribosomal RNA small subunit methyltransferase H [Desulfovibrio africanus str. Walvis Bay] gi|332554658|gb|EGJ51702.1| Ribosomal RNA small subunit methyltransferase H [Desulfovibrio africanus str. Walvis Bay] Length = 328 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 127/324 (39%), Positives = 182/324 (56%), Gaps = 13/324 (4%) Query: 9 MSSAIHHTIGDH--VPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIA 63 M H G+H + VLL + + L P PG LD T G GG+S + ++ G+ ++ Sbjct: 2 MRELAHKEQGEHGHISVLLAETLEFLAPRPGGRYLDGTLGLGGHSEAILELAGQGAELLG 61 Query: 64 LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDC 120 LDRD A+ + + + + L QA +S + + + G +DG V DLG+SS+Q+D Sbjct: 62 LDRDAQALERARTRLARFGQAAHLVQAPYSSFEAEMENLGWDLLDGAVLDLGISSLQVDL 121 Query: 121 GDRGFSFQKSGPLDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178 +RGFSF GPLDMRM AS +VN+A+ + L I+ LGEE A RIA AIV+ Sbjct: 122 AERGFSFMAEGPLDMRMDPDSGAAPASQIVNKASCERLKEIIRDLGEEPMAGRIARAIVE 181 Query: 179 RRQSAPFQTTQDLSSLIQKTVYFSKNN--RIHPATRSFQALRIFVNNEIEELAQGLRSAE 236 RQ +TT +L++++ + R HPATR+FQALR+ VN+E+EEL L Sbjct: 182 ARQDKEIETTLELAAIVARAYPAKWRRTARNHPATRTFQALRMAVNSELEELESFLSRIT 241 Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVP 295 L+ GG ++V+SFHSLEDRLVK F + K R + +TKK + P Sbjct: 242 DRLRPGGRVVVISFHSLEDRLVKWAFREDARKCRCPRTQPFCDCGGQPRLKLLTKKPLAP 301 Query: 296 TQEDVAFNRRSRSAKLRAGMRTVE 319 +++++A N RSRSAKLRA R E Sbjct: 302 SEQEMAANPRSRSAKLRAAERVGE 325 >gi|320527513|ref|ZP_08028693.1| S-adenosyl-methyltransferase MraW [Solobacterium moorei F0204] gi|320132070|gb|EFW24620.1| S-adenosyl-methyltransferase MraW [Solobacterium moorei F0204] Length = 311 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 109/309 (35%), Positives = 161/309 (52%), Gaps = 9/309 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77 H VLL++ + LN + +D T G GG+S ++ A D+D A++ E Sbjct: 3 HTSVLLKETVDSLNVKEDGIYVDGTLGRGGHSGYLISKLKSGHLYAFDKDSQAIAESTEN 62 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++D ++ F +++ + +G V+G++ DLGVSS Q D RGFS++ LD Sbjct: 63 LKDVLPYITMIHNDFRSMKEELAKRGIYEVNGIMMDLGVSSPQFDDPTRGFSYRYDARLD 122 Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM+ + A VVN + ++L RIL GEEK IA AI K+R P +TT L Sbjct: 123 MRMNQEQELDAYQVVNTYSFEELCRILREYGEEKFTKSIARAIEKQRAIQPIETTFQLVD 182 Query: 194 LIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ + + HPA ++FQALRI VN+E+ L +GL A LK G +++FHS Sbjct: 183 VIKSALPDKVLRQKGHPAKQTFQALRIEVNDELGALQKGLEEALSILKPNGRCAIITFHS 242 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 LEDR+VK F S + S+ A + ITKK + T E++ N RS SAK Sbjct: 243 LEDRMVKNVFKEYSSAPYIDPRIPIKASDIKQADYNLITKKPITATDEELDENHRSHSAK 302 Query: 311 LRAGMRTVE 319 LR + E Sbjct: 303 LRVIEKKGE 311 >gi|260886497|ref|ZP_05897760.1| S-adenosyl-methyltransferase MraW [Selenomonas sputigena ATCC 35185] gi|330839659|ref|YP_004414239.1| S-adenosyl-methyltransferase MraW [Selenomonas sputigena ATCC 35185] gi|260863640|gb|EEX78140.1| S-adenosyl-methyltransferase MraW [Selenomonas sputigena ATCC 35185] gi|329747423|gb|AEC00780.1| S-adenosyl-methyltransferase MraW [Selenomonas sputigena ATCC 35185] Length = 311 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 107/307 (34%), Positives = 160/307 (52%), Gaps = 11/307 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQE 76 H V+ E+ +A L P +D T G G++R +I LD+D A+ +E Sbjct: 5 HTSVMPEETLAALAVKPAGTYIDCTLGGAGHARRIADRLSPAGRLIGLDQDEAAIRAAKE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + + + ++ F L + GV DGV+FDLGVSS QID +RGFS+ + PL Sbjct: 65 RLANVSCRVDVVRSNFRALDSVLQSLGVTSVDGVLFDLGVSSHQIDTAERGFSYMQDAPL 124 Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S + SA +VVN+ + +L I GEE+ A RIA IV RQ P +TT +L Sbjct: 125 DMRMDTSRLLSAHEVVNEYDEAELWHIFRDYGEERWAKRIAEFIVAARQEKPIETTGELV 184 Query: 193 SLIQKTVYF--SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 ++ + V + HPA R FQA+RI VN+E+ L + +A AL GG + V++F Sbjct: 185 DIVCRAVPKGVRRAAGGHPAKRIFQAIRIEVNDELGILQASVENAVHALAPGGRIAVLTF 244 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK+ + + + H + + K P+ + A N R++SA Sbjct: 245 HSLEDRIVKQALKELARGCICPPGLPVCVCGHEPKVRLL-GKAQKPSAAEAAENPRAKSA 303 Query: 310 KLRAGMR 316 KLR + Sbjct: 304 KLRVAEK 310 >gi|76788170|ref|YP_329009.1| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae A909] gi|161485617|ref|NP_687320.2| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae 2603V/R] gi|30173046|sp|Q8E1R8|RSMH_STRA5 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|88909222|sp|Q3K394|RSMH_STRA1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|76563227|gb|ABA45811.1| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae A909] Length = 315 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 101/320 (31%), Positives = 166/320 (51%), Gaps = 15/320 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 M++ H H+ VLL + + +L+ P + +DAT G G+S ++ A D Sbjct: 1 MTNDFH-----HITVLLHETVDMLDIKPDGIYVDATLGGAGHSEYLLSQLGPDGHLYAFD 55 Query: 66 RDPFAVSCGQETMRDYKE--QFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120 +D A+ ++ Y + Q + + F L + GV +G+ +DLGVSS Q+D Sbjct: 56 QDQKAIDNAHIRLKKYVDTGQVTFIKDNFRNLSSNLKALGVSEINGICYDLGVSSPQLDE 115 Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS+++ PLDMRM+ ++A DVVN + DL RI GE+K + +IA I + Sbjct: 116 RERGFSYKQDAPLDMRMNREQSLTAYDVVNTYSYHDLVRIFFKYGEDKFSKQIARKIEQV 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R TT +L+ +I+ + + + HPA + FQA+RI VN+E+ + ++ A Sbjct: 176 RAEKTISTTTELAEIIKSSKSAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDL 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L G + V++FHSLEDRL K+ F S + + + + +K ++P+QE Sbjct: 236 LAVDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLQPKMELVNRKPILPSQE 295 Query: 299 DVAFNRRSRSAKLRAGMRTV 318 ++ N R+ SAKLR R Sbjct: 296 ELEANNRAHSAKLRVARRIR 315 >gi|320161732|ref|YP_004174957.1| S-adenosyl-methyltransferase MraW [Anaerolinea thermophila UNI-1] gi|319995586|dbj|BAJ64357.1| S-adenosyl-methyltransferase MraW [Anaerolinea thermophila UNI-1] Length = 312 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 127/314 (40%), Positives = 179/314 (57%), Gaps = 12/314 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69 + H PVL +++I L P +DAT GAGG++ + ++ LD DP Sbjct: 1 MSEASVPHRPVLYQEIILALRPHSPGRYVDATVGAGGHAAGILEASSPKGELLGLDPDPQ 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFS 126 A++ + + + E+ L QA++ L++ + G VDG+VFDLGVSSMQ+D +RGFS Sbjct: 61 ALALASQRLSIFGERVHLVQASYVTLKEQLAVLGWQEVDGIVFDLGVSSMQLDTPERGFS 120 Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 F G LDMR +A D+VN ++L RIL GEE+ A RIA AIV+ R P Sbjct: 121 FSAEGKLDMRFDPCQDTTAEDLVNHLPEEELARILWEYGEERYARRIARAIVQAR---PL 177 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT++L+ L+ + V K RIHPATR+FQALRI VN E+E + L A + LKAGG L Sbjct: 178 HTTRELAELVARIV-GGKRERIHPATRTFQALRIAVNRELEAIETVLPQAVECLKAGGRL 236 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 V+SFHSLEDRLVK FF S + + + H A + +T+ + + E+V N Sbjct: 237 AVISFHSLEDRLVKHFFRRESRDCLCPPEQPVCTCGHKASLREVTRHPIEASDEEVRENP 296 Query: 305 RSRSAKLRAGMRTV 318 R+RSA+LR + Sbjct: 297 RARSARLRVAEKIA 310 >gi|300813315|ref|ZP_07093670.1| S-adenosyl-methyltransferase MraW [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512586|gb|EFK39731.1| S-adenosyl-methyltransferase MraW [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 320 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 115/307 (37%), Positives = 171/307 (55%), Gaps = 10/307 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 HV VL +V+ LN K+ +DAT G G+S+ K+ +N +I +D+D A+ Sbjct: 4 KHVSVLYNEVLENLNIRENKIYMDATIGGAGHSKGIAKILNNSGLLIGIDQDKDAIKKSH 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + +Y E LF + ++ + K VDG++ DLGVSS Q D G RGFS++ Sbjct: 64 EVLSEY-ENVKLFNTNYKNFEEILDSLHIKKVDGILLDLGVSSYQFDKGKRGFSYRFDSE 122 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + ++A +VN+ + +L RI+ GEE A RIA IV+ R+ TT DL Sbjct: 123 LDMRMDKTLPLTAKTIVNEYSKDELYRIIKEYGEENWAKRIAEFIVQERKIKKINTTFDL 182 Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+K V ++ + HPA R+FQALRI VN+E+ L + + + L GG L ++SF Sbjct: 183 VEVIKKAVPKGARRDGPHPAKRTFQALRIEVNDELNVLKKSIYKFVERLNPGGRLAIISF 242 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK F + +I + + IT+K +VPT+E++ N RS SA Sbjct: 243 HSLEDRIVKNAFRYLYSDCVCPPEQIICTCDKKREIEIITRKPIVPTKEEIKNNNRSHSA 302 Query: 310 KLRAGMR 316 KLR + Sbjct: 303 KLRVAEK 309 >gi|332288560|ref|YP_004419412.1| S-adenosyl-methyltransferase MraW [Gallibacterium anatis UMN179] gi|330431456|gb|AEC16515.1| S-adenosyl-methyltransferase MraW [Gallibacterium anatis UMN179] Length = 321 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 120/320 (37%), Positives = 178/320 (55%), Gaps = 20/320 (6%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69 + ++ H VLL + + L P + +D TFG GG+SR + +IA+DRDP Sbjct: 4 VTYSDPSHFTVLLNEAVDGLAIKPNGIYIDGTFGRGGHSRRILSLLGEHGRLIAIDRDPQ 63 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGF 125 A++ Q +FS+ FS++ + +DG++ DLGVSS Q+D +RGF Sbjct: 64 AIAAAQSI---QDPRFSIEHHNFSEINEICEKYQLIGKIDGILLDLGVSSPQLDQAERGF 120 Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-- 182 SF + GPLDMRM + G+SA+ + Q + DL +L GEE+ A RIA IV+ Q Sbjct: 121 SFMQDGPLDMRMDTTKGLSAAQWLQQVSESDLAWVLKTFGEERFAKRIARNIVQFNQQAK 180 Query: 183 ----APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 P T L+ LI +++ + ++ HPATRSFQA+RIF+N+E+EEL + L +A Sbjct: 181 LNGTEPLTRTLQLAQLIAQSIPLKEKHK-HPATRSFQAIRIFINSELEELEKILTAAIDV 239 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ--SITKKVVVPT 296 L G L ++SFHSLEDRLVK+F +S R + + Q I K ++P+ Sbjct: 240 LAPQGRLSIISFHSLEDRLVKRFMKKQSKGDDIPRGLPLTEDQIERNQKLKIIGKAIMPS 299 Query: 297 QEDVAFNRRSRSAKLRAGMR 316 ++++A N RSRSA LR R Sbjct: 300 EQEIAVNSRSRSAVLRVAER 319 >gi|73662901|ref|YP_301682.1| S-adenosyl-methyltransferase MraW [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|88909221|sp|Q49WW1|RSMH_STAS1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|72495416|dbj|BAE18737.1| putative methyltransferase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 311 Score = 371 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 103/308 (33%), Positives = 164/308 (53%), Gaps = 9/308 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSC 73 + HV V+L++ I LN V +D T G G++ +IA+D+D A+ Sbjct: 1 MFHHVSVMLKETIDYLNIKEDGVYVDCTLGGAGHALYLLNQLGDEGRLIAIDQDTTAIEN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E ++++ + + F ++ + + D + VDG+ +DLGVSS Q+D +RGFS+ Sbjct: 61 AKEVLKEHLHKVTFVHNNFRKITEILNDLNIEKVDGIYYDLGVSSPQLDVPERGFSYHHD 120 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM + +SA +VVN+ + L RI GEEK + +IA I + R+ P +TT Sbjct: 121 AKLDMRMDQTQSLSAFEVVNEWEFEKLVRIFHRYGEEKFSKQIARRIEQNREQKPIETTL 180 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I++ + + HPA R FQA+RI VN+E+ L A A+K G + V+ Sbjct: 181 ELVDVIKEGIPAKARRKGGHPAKRIFQAIRIAVNDELSAFEDSLEQAIDAVKMDGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F R + A+ + + +K ++ T ED+ N R+R Sbjct: 241 TFHSLEDRLCKQMFQEYEKGPDVPRGLPVIPEAYTPKLKRVNRKPIIATDEDLEENNRAR 300 Query: 308 SAKLRAGM 315 SAKLR Sbjct: 301 SAKLRVAE 308 >gi|257467026|ref|ZP_05631337.1| methyltransferase [Fusobacterium gonidiaformans ATCC 25563] Length = 313 Score = 371 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 107/307 (34%), Positives = 175/307 (57%), Gaps = 10/307 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H+PVL E+ + L P + +D T G G +S K +I++D+D A++ ++ Sbjct: 9 HIPVLYEETLDQLVWNPDGIYIDCTLGGGSHSEGILKRLSEKGRLISIDQDANAIAFCKK 68 Query: 77 TMRDYKEQFSLFQATFSQLQ--DYVPD-KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + +Q+S+FQ F + Y+ VDG++ D+GVSS Q+D G+RGFS++ L Sbjct: 69 RLEKHGKQWSVFQNNFENIDIVSYLAGVDKVDGILMDIGVSSTQLDDGERGFSYRYDAKL 128 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +SA +VVN +DL RIL GEE+ A +IA I + R+ P +TT +L Sbjct: 129 DMRMNKEQDLSAYEVVNTYAEQDLVRILFEYGEERHAKKIASFICENRKEKPIETTGELV 188 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++I++ +S+ HPA ++FQA+RI VN E+E L + ++ + LK G L +++FHS Sbjct: 189 AIIKRA--YSERASKHPAKKTFQAIRIEVNRELEVLEKAIQKSVDLLKPKGHLAIITFHS 246 Query: 253 LEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDRLVK F + + A + +TKK ++P+++++ N R+ S+KL Sbjct: 247 LEDRLVKTVFKDLATACKCPPELPVCVCGGKAKVKILTKKPIIPSEDELGKNNRAHSSKL 306 Query: 312 RAGMRTV 318 R R Sbjct: 307 RVVERLA 313 >gi|326204085|ref|ZP_08193946.1| S-adenosyl-methyltransferase MraW [Clostridium papyrosolvens DSM 2782] gi|325985852|gb|EGD46687.1| S-adenosyl-methyltransferase MraW [Clostridium papyrosolvens DSM 2782] Length = 313 Score = 371 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 111/310 (35%), Positives = 165/310 (53%), Gaps = 11/310 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 H VLL++ I LN + +D T G G+S K +I LD+D FAV Sbjct: 4 KHKSVLLDECIENLNINQDGIYVDGTIGGAGHSSEIYKRLGEKGCLIGLDQDSFAVETSV 63 Query: 76 ETMRDYKEQ--FSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + + + Q F + F ++ + G VDG++ DLGVSS Q+D RGFS+Q Sbjct: 64 KRLSEIESQADFKVVNTNFKNIRKACSELGIDEVDGILLDLGVSSHQLDEASRGFSYQHD 123 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM S +SA DVVN+ + +D+ RI+ GEEK +SRIA IV+ R + P +TT Sbjct: 124 APLDMRMDTKSDLSAYDVVNKYSEQDIYRIIRDYGEEKWSSRIAKFIVEARSNKPVETTY 183 Query: 190 DLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I++ V ++ + HPA R+FQA+RI VNNE+ L + + LK G L ++ Sbjct: 184 ELVDIIKRAVPSSARRDGPHPAKRTFQAIRIEVNNELGILNKTIEDCVDLLKGEGRLCII 243 Query: 249 SFHSLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+VK F + + + +K +V ++ N R+R Sbjct: 244 TFHSLEDRIVKLQFNKMVNPCTCPTSFPVCVCGKKPRAKLVNRKPIVSGVSELEENPRAR 303 Query: 308 SAKLRAGMRT 317 SAKLR + Sbjct: 304 SAKLRVLQKI 313 >gi|94987539|ref|YP_595472.1| S-adenosyl-methyltransferase MraW [Lawsonia intracellularis PHE/MN1-00] gi|172046236|sp|Q1MPC6|RSMH_LAWIP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|94731788|emb|CAJ55151.1| predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Lawsonia intracellularis PHE/MN1-00] Length = 312 Score = 371 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 114/311 (36%), Positives = 182/311 (58%), Gaps = 11/311 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 H PV+LE+ IA+L P LD T G GG+S + + G+ + LD+D A++ + Sbjct: 1 MHQPVMLEETIAMLKPHAKGRYLDGTVGLGGHSFAILQSAGDGAELCGLDQDKKALAIAE 60 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 T++ +K++ L +S + G +DG + D+GVSS+Q+D +RGFSF GP Sbjct: 61 MTLKPFKKRVHLVHTKYSSFPLILKALGWKLLDGALIDIGVSSLQLDNAERGFSFLYDGP 120 Query: 133 LDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM + S ++VN++ + L I+ GEE QA+RIA AIV++R++ P TT++ Sbjct: 121 LDMRMDQDANNNSLFEIVNKSRQEYLKDIISRYGEEPQANRIAKAIVQKRRTKPITTTKE 180 Query: 191 LSSLIQKTVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ LI++ + + HPAT++FQA RI VN+E+ EL + L + GG + V+ Sbjct: 181 LADLIEQAYPAAWRAKSRHHPATKTFQAFRIVVNSELNELEKFLNMIMGWIAPGGRVAVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 SFHSLEDR+VK++ S + + + + H ITKK + P++++++ N RSR Sbjct: 241 SFHSLEDRIVKQYMKSWTRSCICPPYVPVCKCFHKPEAILITKKPIRPSEKEISENIRSR 300 Query: 308 SAKLRAGMRTV 318 SAKLR + + Sbjct: 301 SAKLRVAEKVL 311 >gi|295425110|ref|ZP_06817815.1| S-adenosyl-methyltransferase MraW [Lactobacillus amylolyticus DSM 11664] gi|295065169|gb|EFG56072.1| S-adenosyl-methyltransferase MraW [Lactobacillus amylolyticus DSM 11664] Length = 315 Score = 371 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 105/312 (33%), Positives = 166/312 (53%), Gaps = 13/312 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76 H VLL + I L P G + +DATFG GG+++ +I D+D +A+ + Sbjct: 4 KHTSVLLHETIDNLKPKDGGLYVDATFGGGGHAKYLLSKLNTGTLIGFDQDEYAIKAAKL 63 Query: 77 TM-----RDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSF 127 D + L FS L+ + G+DG+ +DLGVSS Q D +RGFS+ Sbjct: 64 NFTDLLQEDSNPRLQLVHDNFSHLEQDLVKLGYPDGIDGIYYDLGVSSPQFDQAERGFSY 123 Query: 128 QKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + + LDMRM S + A +VNQ++ +DL IL G+EK + +IAH IV++R+ P + Sbjct: 124 RYNARLDMRMDQSKELDAYQLVNQSSQRDLANILYKYGDEKFSRQIAHRIVEKRREKPIE 183 Query: 187 TTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT +L +I++ + ++ HPA +SFQALR+ VN+E+E L L A K L+ G + Sbjct: 184 TTFELVDIIKEAIPAYARRTGGHPAKKSFQALRVAVNHELEVLQTSLEEAVKLLRPKGRI 243 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V++F S ED++VKK F S + + + + + +K + + ++ N R Sbjct: 244 SVITFQSDEDKIVKKIFKKYSEVEVPRGMPMIPDGMKPTLRLVNRKPITASALELENNNR 303 Query: 306 SRSAKLRAGMRT 317 S SAKLR + Sbjct: 304 SHSAKLRVAEKI 315 >gi|227524041|ref|ZP_03954090.1| S-adenosyl-methyltransferase [Lactobacillus hilgardii ATCC 8290] gi|227088780|gb|EEI24092.1| S-adenosyl-methyltransferase [Lactobacillus hilgardii ATCC 8290] Length = 315 Score = 371 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 110/310 (35%), Positives = 173/310 (55%), Gaps = 12/310 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76 HV VLL + + L+ P +DAT G GG++ K ++ + D+D A+S Q+ Sbjct: 5 KHVTVLLHEAVDGLDVDPNGTYVDATLGGGGHTTEILKRIDKGHLYSFDQDEEAISYNQQ 64 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +R Y ++ +L F ++ + D+G+ DG+V+DLGVSS Q D RGFS++ Sbjct: 65 HLRQYVENDKLTLIHDNFRNIKVALADQGISKIDGIVYDLGVSSPQFDEAGRGFSYRFEA 124 Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM A V+N+ + L RI GEEK + +IA I + R+ P TT D Sbjct: 125 HLDMRMDQDNPVDAWKVINEWPYEKLVRIFYRYGEEKFSKQIARRIERTREDHPINTTTD 184 Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +LI++ + + + + HPA + FQA+RI VN+E+ L L + + L GG + V++ Sbjct: 185 LVTLIKEAIPAAARRHGGHPAKKVFQAVRIAVNDELSALEDSLEQSLELLAVGGRISVIT 244 Query: 250 FHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 F SLEDRLVK F ++ ++ +IP P ++ IT+K ++P ++++A N R+ Sbjct: 245 FQSLEDRLVKTMFKEKASLPELPPNLPVIPKELQPK-YKLITRKPIIPNEDELADNHRAH 303 Query: 308 SAKLRAGMRT 317 SAKLR RT Sbjct: 304 SAKLRIIERT 313 >gi|78484904|ref|YP_390829.1| methyltransferase [Thiomicrospira crunogena XCL-2] gi|123555855|sp|Q31I68|RSMH_THICR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|78363190|gb|ABB41155.1| S-adenosyl-methyltransferase MraW [Thiomicrospira crunogena XCL-2] Length = 314 Score = 371 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 122/318 (38%), Positives = 178/318 (55%), Gaps = 13/318 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 MS +H PV+L + +A LN P + +D TFG GG+SR+ ++A+D Sbjct: 1 MSEIEQTGQSNHYPVMLSESVAGLNIDPNGIYIDCTFGRGGHSRAILNELGEQGRLLAID 60 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCG 121 +DP A+ D +F + +F LQ Y + +DG++ DLGVSS Q+D Sbjct: 61 QDPEAIRYADANFDD--PRFEIQHGSFEALQQYCEARDWVGKIDGILIDLGVSSPQLDEA 118 Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF +SGPLDMRM+ +G+SA + + Q + K L ++L GEE+ + RIA I + Sbjct: 119 ERGFSFMRSGPLDMRMNPQTGLSAKEWLTQVDEKTLAQVLKQYGEERFSGRIARHIKEAV 178 Query: 181 QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 Q QTT DL+ ++ K ++ ++ HPATR+FQA+RI VN E++ L L + LK Sbjct: 179 QEQKLQTTLDLAQVVTKASPKTEKHK-HPATRTFQAIRIAVNRELDVLKTVLEVSVAVLK 237 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 GG L V+SFHSLEDR+VK+F +S K + I V + + K V P++E+ Sbjct: 238 TGGRLSVISFHSLEDRIVKQFIRDQSRIKDLFPDSPIQLEVVEPVIKKV-GKPVFPSKEE 296 Query: 300 VAFNRRSRSAKLRAGMRT 317 N RSRSA LR R Sbjct: 297 CQENPRSRSAVLRIAERI 314 >gi|58337113|ref|YP_193698.1| S-adenosyl-methyltransferase MraW [Lactobacillus acidophilus NCFM] gi|227903687|ref|ZP_04021492.1| S-adenosyl-methyltransferase [Lactobacillus acidophilus ATCC 4796] gi|68565411|sp|Q5FKV7|RSMH_LACAC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|58254430|gb|AAV42667.1| cell division protein [Lactobacillus acidophilus NCFM] gi|227868574|gb|EEJ75995.1| S-adenosyl-methyltransferase [Lactobacillus acidophilus ATCC 4796] Length = 315 Score = 371 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 104/311 (33%), Positives = 164/311 (52%), Gaps = 13/311 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76 H VLL + I L P + +DATFG GG+++ +I D+D +A+ + Sbjct: 4 KHTSVLLHETIDNLKPKNDGLYVDATFGGGGHAKYLLSKIDTGTLIGFDQDEYAIKSAEL 63 Query: 77 TMR-----DYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSF 127 D + + L FS L++ + G+DG+ +DLGVSS Q D DRGFS+ Sbjct: 64 NFANLLKPDSEPKLQLVHDNFSNLEENLVKLGYTDGIDGIYYDLGVSSPQFDQADRGFSY 123 Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + + LDMRM+ + A +VN + K+L IL G+EK + +IAH IV++R+ P Sbjct: 124 RYNARLDMRMNQDQDLDAYQLVNTLSQKELADILYQYGDEKFSRQIAHKIVEKRKEKPIV 183 Query: 187 TTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT +L +I+ + ++ HPA +SFQALR+ VN+E++ L L A K L+ GG + Sbjct: 184 TTFELVDIIKDAIPAYARRTGGHPAKKSFQALRVAVNHELDVLQASLEEAIKVLRPGGRI 243 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V++F S ED++VKK F S + + + + +K +V + ++ N R Sbjct: 244 SVITFQSHEDKIVKKIFKKYSEVEVPRGMPFIPDDMKPTLKLVNRKPIVASDSELENNNR 303 Query: 306 SRSAKLRAGMR 316 S SAKLR + Sbjct: 304 SHSAKLRVAEK 314 >gi|330828037|ref|YP_004390989.1| ribosomal RNA small subunit methyltransferase H [Aeromonas veronii B565] gi|328803173|gb|AEB48372.1| Ribosomal RNA small subunit methyltransferase H [Aeromonas veronii B565] Length = 312 Score = 371 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 121/313 (38%), Positives = 175/313 (55%), Gaps = 14/313 (4%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSC 73 +H+ VLL + + L P V +D TFG GG+SR + +IA+DRDP A++ Sbjct: 4 AAEHITVLLHEAVEGLAIKPDGVYVDGTFGRGGHSRLILQHLGPNGRLIAIDRDPQAIA- 62 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQK 129 E + +F + FS + Y+ ++G VDG + DLGVSS Q+D +RGFSF K Sbjct: 63 --EAAKIQDPRFEIVHGPFSGIASYLDERGLLGKVDGFLLDLGVSSPQLDDAERGFSFMK 120 Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM SG SA++ + +A+V D+ +L GEE+ A +IA AIV R + P+ T Sbjct: 121 DGPLDMRMDPTSGQSAAEWLAKADVDDIAWVLKTFGEERFAKKIARAIVHDRVTEPYVRT 180 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 + L+ +I + SK H ATRSFQA+RI++N+E++E+ L A + L G L V+ Sbjct: 181 RQLAEMIARVNP-SKEKGKHAATRSFQAIRIYINSELDEIETALNGALEVLAPHGRLSVI 239 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI--TKKVVVPTQEDVAFNRRS 306 SFHSLEDRLVK F + + A A + + K + P+ +V+ N RS Sbjct: 240 SFHSLEDRLVKHFIRKHEKGPEVPYGIPLTEAQLAGGRKLKSVGKALKPSDHEVSENSRS 299 Query: 307 RSAKLRAGMRTVE 319 RS+ LR R E Sbjct: 300 RSSVLRVAERLAE 312 >gi|317489854|ref|ZP_07948347.1| MraW methylase [Eggerthella sp. 1_3_56FAA] gi|316911009|gb|EFV32625.1| MraW methylase [Eggerthella sp. 1_3_56FAA] Length = 318 Score = 371 bits (953), Expect = e-101, Method: Composition-based stats. Identities = 117/311 (37%), Positives = 179/311 (57%), Gaps = 14/311 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H PVLL + + N P +DAT G G+S K+ G +I +D+D A++ + Sbjct: 7 HTPVLLAECLEYSNLKPQHTFVDATLGGAGHSFEAAKLIGSGGTLIGIDQDEVALAAARL 66 Query: 77 TM----RDYKEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 + D + + L + F + + + GVD V+FDLGVSS+QID RGFSF++ Sbjct: 67 KLGTLPDDVRPRLELVRGNFGNMDEALLSTEVPGVDAVLFDLGVSSVQIDTPSRGFSFKE 126 Query: 130 SGPLDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 +GPLDMRM ++A++++N DLTRI+ +EK ASRIA V+ RQ+AP +T Sbjct: 127 NGPLDMRMDPGKQTLTAAEIINTYTAADLTRIIRTYSDEKWASRIADFAVRARQNAPIET 186 Query: 188 TQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 ++ L +I+ + ++ HPA R+FQALRI VN E++ L GL +A + L GG L+ Sbjct: 187 SEQLVDIIKAAIPASARRAGGHPAKRTFQALRIEVNGELDVLRSGLDAAIRWLNPGGRLV 246 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V+S+HSLEDR+VK+ FA + + + + +T+K V+PT E++ N R Sbjct: 247 VISYHSLEDRIVKETFAKFANRCTCPPDLPACMCGKQPILDIVTRKPVLPTAEEIERNAR 306 Query: 306 SRSAKLRAGMR 316 +RSAKLR + Sbjct: 307 ARSAKLRVAQK 317 >gi|240948415|ref|ZP_04752793.1| S-adenosyl-methyltransferase MraW [Actinobacillus minor NM305] gi|240297241|gb|EER47799.1| S-adenosyl-methyltransferase MraW [Actinobacillus minor NM305] Length = 314 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 120/320 (37%), Positives = 177/320 (55%), Gaps = 20/320 (6%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 MS +H H+ VLL + + L P + +D TFG GG+SR +IA D Sbjct: 1 MSDTLH----KHITVLLHEAVEGLAIKPNGIYIDGTFGRGGHSRLILSKLNEQGRLIATD 56 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCG 121 RDP A++ +F + FS + D +DG++ DLGVSS Q+D Sbjct: 57 RDPRAIAEAHTI---TDPRFQIIHTAFSAIPQVCEDLDLTGKIDGILLDLGVSSPQLDDA 113 Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF + GPLDMRM S G+SA++ ++Q +++DLT +L GEE+ A RIA AIV Sbjct: 114 ERGFSFMRDGPLDMRMDTSKGLSAAEWLDQVSIEDLTWVLKEFGEERFAKRIATAIVNFN 173 Query: 181 QS--APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 ++ T L+ +I V F K+ HPATRSFQA+RIF+N+E++EL + L SA Sbjct: 174 KTSSQKITRTLQLAQIISDAVPF-KDKHKHPATRSFQAIRIFINSELDELEKALNSALSV 232 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPT 296 L G L ++SFHSLEDR+VK+F S R ++ ++ + + K ++P+ Sbjct: 233 LAPEGRLSIISFHSLEDRMVKQFMKKNSKGKEVPRGLPILEADLNKDIPLKTIGKAIMPS 292 Query: 297 QEDVAFNRRSRSAKLRAGMR 316 + ++ N RSRSA LR + Sbjct: 293 EAEIEANPRSRSAVLRVAEK 312 >gi|257438103|ref|ZP_05613858.1| S-adenosyl-methyltransferase MraW [Faecalibacterium prausnitzii A2-165] gi|257199434|gb|EEU97718.1| S-adenosyl-methyltransferase MraW [Faecalibacterium prausnitzii A2-165] Length = 322 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 113/318 (35%), Positives = 169/318 (53%), Gaps = 12/318 (3%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-----KMGSNVIAL 64 + +HVPVLL + + L P LD T G G+SR + G +I+L Sbjct: 7 AQPFDPASFEHVPVLLNECLDGLKIDPAGTYLDGTAGGAGHSRQIALRLNGEQGGRLISL 66 Query: 65 DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCG 121 D+DP AV + + ++ Q F + G+ +G + DLGVSS Q+D Sbjct: 67 DQDPDAVQTARARLAGLPA--TVVQINFRYAGQALEQLGIETINGALLDLGVSSHQLDDA 124 Query: 122 DRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFS++ PLDMRMS G +A+D+VN + ++L RIL GEE A +IA IV+ R+ Sbjct: 125 ARGFSYRADAPLDMRMSQEGETAADLVNSESREELARILRDYGEEPFAWQIAGRIVEARE 184 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 +AP +TT L+ ++ + ++ + +P+ R+FQALRI VN+E++ L +GL + L Sbjct: 185 TAPIETTLQLADIVASAMPPAERRKNKNPSRRTFQALRIAVNHELDALEEGLDTIFAHLA 244 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQED 299 GG L V++FHSLEDRLVK F S + A + IT+K + ++ Sbjct: 245 PGGRLCVITFHSLEDRLVKNKFRRWSTACTCPPEFPVCVCGGKAKAKLITRKPIEANTQE 304 Query: 300 VAFNRRSRSAKLRAGMRT 317 + NRRSRSA LR + Sbjct: 305 LEENRRSRSAHLRVLEKI 322 >gi|94994874|ref|YP_602972.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes MGAS10750] gi|94548382|gb|ABF38428.1| S-adenosyl-methyltransferase mraW [Streptococcus pyogenes MGAS10750] Length = 337 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 104/328 (31%), Positives = 173/328 (52%), Gaps = 15/328 (4%) Query: 1 MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-- 58 ++ + K M+ H HV VLL + + +L+ P + +DAT G G+S Sbjct: 14 LKYGTIKVMTKEFH-----HVTVLLHETVDMLDIKPNGIYVDATLGGSGHSAYLLSKLSE 68 Query: 59 -SNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGVD---GVVFDLG 112 ++ D+D A+ Q T++ Y K Q + + F L+ + GVD G+++DLG Sbjct: 69 QGHLYCFDQDQKAIDNAQVTLKSYIDKGQVTFIKDNFRHLKARLTALGVDEIDGILYDLG 128 Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASR 171 VSS Q+D +RGFS+++ PLDMRM + +A +VVN DL +I GE+K + + Sbjct: 129 VSSPQLDERERGFSYKQDAPLDMRMDRQSLLTAYEVVNTYPFNDLVKIFFKYGEDKFSKQ 188 Query: 172 IAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQ 230 IA I + R P +TT +L+ LI+ + + HPA + FQA+RI VN+E+ + Sbjct: 189 IARKIEQARAIKPIETTTELAELIKAAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADE 248 Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK 290 ++ A + L G + V++FHSLEDRL K+ F S + + F+ +++ Sbjct: 249 SIQDAMELLALDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPLIPEDMKPTFELVSR 308 Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMRTV 318 K ++P+ ++ N+R+ SAKLR + Sbjct: 309 KPILPSHSELTANKRAHSAKLRVAKKIR 336 >gi|259416349|ref|ZP_05740269.1| S-adenosyl-methyltransferase MraW [Silicibacter sp. TrichCH4B] gi|259347788|gb|EEW59565.1| S-adenosyl-methyltransferase MraW [Silicibacter sp. TrichCH4B] Length = 329 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 149/317 (47%), Positives = 196/317 (61%), Gaps = 5/317 (1%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRD 67 M+ G HVPVLL+ ++ + P G+ LD TFGAGGY++ G+ VI +DRD Sbjct: 1 MTDRTAAPSGPHVPVLLKPLLEAVAPVTGR-WLDGTFGAGGYTKGLLAAGAEQVIGVDRD 59 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 P A Q+ +Y + L Q FS++ +Y D +DGVV DLGVSSMQ+D +RGFSF Sbjct: 60 PLAFEMAQDWAEEYGARLVLQQGVFSRMDEYASD--LDGVVLDLGVSSMQLDLAERGFSF 117 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 K GPLDMRMS G SA+D+V + L IL GEE+ + RIA AIV+ R P T Sbjct: 118 MKDGPLDMRMSQDGSSAADLVAELTEVQLADILYSFGEERASRRIAKAIVRERALEPITT 177 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T L+ +I+ + K + HPATRSFQALRI VN E EEL GL +AE+ALK GGLL V Sbjct: 178 TLRLAEIIESCLPRPKPGQSHPATRSFQALRIAVNGEYEELMGGLLAAERALKPGGLLAV 237 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPS-NAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+FHS+EDR+VK+FF R+ K P+ P+ F+ +T+K V P ++++A N RS Sbjct: 238 VTFHSVEDRMVKRFFQHRANKTGNANRFAPAMEEQPSQFELVTRKAVGPDKDELAQNPRS 297 Query: 307 RSAKLRAGMRTVERSIE 323 RSA LR G RT +E Sbjct: 298 RSALLRVGRRTDAAPVE 314 >gi|152968667|ref|YP_001333776.1| S-adenosyl-methyltransferase MraW [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238893062|ref|YP_002917796.1| S-adenosyl-methyltransferase MraW [Klebsiella pneumoniae NTUH-K2044] gi|262044874|ref|ZP_06017917.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330012015|ref|ZP_08307232.1| S-adenosyl-methyltransferase MraW [Klebsiella sp. MS 92-3] gi|263456196|sp|A6T4M5|RSMH_KLEP7 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|150953516|gb|ABR75546.1| S-adenosyl-methyltransferase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238545378|dbj|BAH61729.1| S-adenosyl-methyltransferase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259037843|gb|EEW39071.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328534004|gb|EGF60656.1| S-adenosyl-methyltransferase MraW [Klebsiella sp. MS 92-3] Length = 313 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 120/312 (38%), Positives = 182/312 (58%), Gaps = 19/312 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ Q Sbjct: 6 KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSRLGAEGRLLAIDRDPQAIAVAQ 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +FS+ FSQL +YV ++ +DG++ DLGVSS Q+D +RGFSF + G Sbjct: 66 TI---DDPRFSIVHGPFSQLAEYVGERNLTGKIDGILLDLGVSSPQLDDAERGFSFMRDG 122 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + G SA++ + A D+ ++ GEE+ RIA AIV+R + P T++ Sbjct: 123 PLDMRMDPTRGQSAAEWLQTAEEDDIAWVIKTFGEERFGKRIARAIVERNRIQPMTRTKE 182 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ +I + K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L ++SF Sbjct: 183 LAEVIAAAMPV-KDKHKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSIISF 241 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305 HSLEDR+VK+F +S + + A +++ K ++P +E+VA N R Sbjct: 242 HSLEDRIVKRFMREQSRGPQVPAGIPMTEAQLKKLGGRELRALGK--LMPGEEEVAENPR 299 Query: 306 SRSAKLRAGMRT 317 +RS+ LR RT Sbjct: 300 ARSSVLRIAERT 311 >gi|50914761|ref|YP_060733.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes MGAS10394] gi|50903835|gb|AAT87550.1| S-adenosyl-methyltransferase [Streptococcus pyogenes MGAS10394] Length = 337 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 105/328 (32%), Positives = 174/328 (53%), Gaps = 15/328 (4%) Query: 1 MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS- 59 ++ + K M+ H HV VLL + + +L+ P + +DAT G G+S Sbjct: 14 LKYGTIKVMTKEFH-----HVTVLLHETVDMLDIKPDGIYVDATLGGSGHSAYLLSKLGE 68 Query: 60 --NVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGVD---GVVFDLG 112 ++ D+D A+ Q T++ Y K Q + + F L+ + GVD G+++DLG Sbjct: 69 EGHLYCFDQDQKAIDNAQVTLKSYIDKGQVTFIKDNFRHLKARLTALGVDEIDGILYDLG 128 Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASR 171 VSS Q+D +RGFS+++ PLDMRM + +A +VVN DL +I GE+K + + Sbjct: 129 VSSPQLDERERGFSYKQDAPLDMRMDRQSLLTAYEVVNTYPFNDLVKIFFKYGEDKFSKQ 188 Query: 172 IAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQ 230 IA I + R P +TT +L+ LI+ + + HPA + FQA+RI VN+E+ + Sbjct: 189 IARKIEQARAIKPIETTTELAELIKAAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADE 248 Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK 290 ++ A + L G + V++FHSLEDRL K+ F S + + F+ +++ Sbjct: 249 SIQEAMELLALDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPLIPEDMKPKFELVSR 308 Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMRTV 318 K ++P+ ++A N+R+ SAKLR + Sbjct: 309 KPILPSHSELAANKRAHSAKLRVAKKIR 336 >gi|228474969|ref|ZP_04059697.1| S-adenosyl-methyltransferase MraW [Staphylococcus hominis SK119] gi|314936659|ref|ZP_07844006.1| S-adenosyl-methyltransferase MraW [Staphylococcus hominis subsp. hominis C80] gi|228270954|gb|EEK12342.1| S-adenosyl-methyltransferase MraW [Staphylococcus hominis SK119] gi|313655278|gb|EFS19023.1| S-adenosyl-methyltransferase MraW [Staphylococcus hominis subsp. hominis C80] Length = 311 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 103/308 (33%), Positives = 162/308 (52%), Gaps = 9/308 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + HV V+L++ I L+ + +D T G G++ +IA+D+D A+ Sbjct: 1 MFHHVSVMLKETIDELDIKEDGIYVDCTLGGAGHALYLLNQLNDDGRLIAIDQDTTALEN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E +RD+ + + F +L D + + G VDG+ +DLGVSS Q+D +RGFS+ Sbjct: 61 AKEVLRDHLHKVTFVHNNFRELTDILKNLGIEKVDGIYYDLGVSSPQLDIPERGFSYHHD 120 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM + ++A DVVN + L +I GEEK + +IA I R+ P +TT Sbjct: 121 AKLDMRMDQTQELTAYDVVNDWPYEALVKIFYRYGEEKFSKQIARRIEAHREQQPIETTL 180 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I++ + + HPA R FQA+RI VN+E+ + A + +K G + V+ Sbjct: 181 ELVDIIKEGIPAKARRKGGHPAKRIFQAIRIAVNDELSAFEDSIEQAIEHVKVKGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F R I A+ + + +K + T+ED+ N R+R Sbjct: 241 TFHSLEDRLCKQIFQEYEKGPDVPRGLPIIPEAYTPKLKRVNRKPITATEEDLDENNRAR 300 Query: 308 SAKLRAGM 315 SAKLR Sbjct: 301 SAKLRVAE 308 >gi|323340611|ref|ZP_08080863.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Lactobacillus ruminis ATCC 25644] gi|323091734|gb|EFZ34354.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Lactobacillus ruminis ATCC 25644] Length = 316 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 112/313 (35%), Positives = 171/313 (54%), Gaps = 13/313 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 T +HV VLL + + LN P V +D T G GG+++ + + D+D A+ Sbjct: 2 TEFEHVTVLLNEAVEGLNIKPDGVYVDCTLGGGGHTKKILSELSEKGRLYSFDQDQTAID 61 Query: 73 CGQETMRDY--KEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSF 127 +E +++ K + +L ++ F + + + VDG+V+DLGVSS Q D G+RGFS+ Sbjct: 62 YNEEQLKNEIEKGRLTLIKSNFRNIASELEKRDVLSVDGIVYDLGVSSPQFDVGERGFSY 121 Query: 128 QKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 Q LDMRM + ++A +VN+ + DL RI GEEK A IA I K RQ+ + Sbjct: 122 QHDAVLDMRMDQTNDLTAETIVNEWSYNDLVRIFVRYGEEKFAKSIARRIEKDRQNERIK 181 Query: 187 TTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT L LI++ + + HPA + FQA+RI VN+E+ L + L A L G + Sbjct: 182 TTGQLVELIKEGIPAKARRKGGHPAKKVFQAIRIAVNDELGVLEESLEEAFGLLSLHGRI 241 Query: 246 IVVSFHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 V++F SLEDRLVK F ++ ++ +IP P F+ I KK ++PT+E++ N Sbjct: 242 SVITFQSLEDRLVKSMFREKTSLPELPPGLPVIPREMQP-EFKLINKKPILPTEEELENN 300 Query: 304 RRSRSAKLRAGMR 316 R+ SAKLR + Sbjct: 301 HRAHSAKLRIIEK 313 >gi|49475863|ref|YP_033904.1| S-adenosyl-methyltransferase MraW [Bartonella henselae str. Houston-1] gi|54036186|sp|Q6G2P7|RSMH_BARHE RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|49238671|emb|CAF27917.1| hypothetical protein BH11320 [Bartonella henselae str. Houston-1] Length = 346 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 161/322 (50%), Positives = 213/322 (66%), Gaps = 3/322 (0%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+PVLL+ V+A L P G ++D TFGAGGY+R+ G+ VIALDRDP A+ GQ + Sbjct: 25 HIPVLLQPVLAGLIPLVGAKVIDGTFGAGGYTRALLNAGAQVIALDRDPHAIREGQSLVD 84 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 ++ + L Q FSQL D V ++ VD V+ D+GVSSMQ+D +RGFSFQK GPLDMRM+ Sbjct: 85 EFFPRLRLVQGNFSQL-DCVVEEKVDAVILDIGVSSMQLDEAERGFSFQKDGPLDMRMAQ 143 Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199 +G +A+DVVN+ +L RI ILGEE+ A RIA I KRR PF T DL+ I+ V Sbjct: 144 TGFTAADVVNRLKSDELARIFKILGEERYARRIARMIEKRRCVQPFLRTGDLAHAIEVLV 203 Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259 RIHPATR FQALRI+VN+EI ELA+GL +AE+ LK GG L VVSFHSLEDR+VK Sbjct: 204 GRKSGERIHPATRVFQALRIYVNDEIGELARGLFAAERVLKPGGRLGVVSFHSLEDRMVK 263 Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319 +FF++RSG+ + R++ PA F + K + +E++ N RSRSA+LR G+RT Sbjct: 264 RFFSARSGESVRSRYLPEIEMAPATFFPLFKGGITANKEELERNPRSRSARLRIGVRTEA 323 Query: 320 RSIEDDSFVHLPRLPTLSQFRG 341 + D + L L ++ F G Sbjct: 324 ECLFAD--MKLFGLAKIASFEG 343 >gi|254303471|ref|ZP_04970829.1| cell envelope biogenesis S-adenosylmethionine (SAM)-dependent methyltransferase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323663|gb|EDK88913.1| cell envelope biogenesis S-adenosylmethionine (SAM)-dependent methyltransferase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 314 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 106/308 (34%), Positives = 173/308 (56%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+PVL + + L P + +D T G G +S + S+ +I++D+D A+ ++ Sbjct: 9 HIPVLYYETLDNLVKNPDGIYIDCTLGGGSHSEGILERLSDKGLLISIDQDTNAIEYSKK 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + ++ +F+ F + GVD G++ D+GVSS Q+D DRGFS++ L Sbjct: 69 RLEKFGSKWKVFKGNFENIDTIAYMAGVDKVDGILMDIGVSSKQLDDPDRGFSYRYDVKL 128 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ ISA DVVN + + L++I+ GEE+ A +IA IV+ R+S+P + T DL Sbjct: 129 DMRMNTEQKISAYDVVNTYSEEQLSKIIFEYGEERHARKIAKLIVEERKSSPIEKTSDLI 188 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +LI++ + HPA ++FQA+RI VN E+E L + A + LK GG L +++FHS Sbjct: 189 TLIKRAYP--ERASKHPAKKTFQAIRIEVNRELEVLENAMSKAVELLKVGGRLAIITFHS 246 Query: 253 LEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK F + + I F+ +TKK ++P +++ N R+ S+KL Sbjct: 247 LEDRIVKNKFKDLATACKCPKDIPICVCGGVKKFEIVTKKPIIPIDDELKNNNRAHSSKL 306 Query: 312 RAGMRTVE 319 R R ++ Sbjct: 307 RILERILD 314 >gi|23012863|ref|ZP_00052852.1| COG0275: Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Magnetospirillum magnetotacticum MS-1] Length = 319 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 142/319 (44%), Positives = 195/319 (61%), Gaps = 8/319 (2%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSC 73 ++ H+PVLL +VIA L P G +D TFGAGGYSR+ + +V A+DRDP AV+ Sbjct: 2 SSLPPHIPVLLTEVIAALAPRDGGAYVDGTFGAGGYSRAILSAAACHVHAIDRDPSAVAR 61 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130 G+ +FS+ + F + + ++GV DG+ D+GVSSMQID +RGFSF K Sbjct: 62 GKTLEEASAGRFSMIEGRFGDMAALLRERGVNQVDGIALDIGVSSMQIDQPERGFSFAKD 121 Query: 131 GPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 GPLDMRM G SA+D+VN +L I+ GEE+ + R+A AIV+ R+ F+ T + Sbjct: 122 GPLDMRMETKGPSAADMVNDTPEGELANIIYRYGEERLSRRVAKAIVEARRIKRFERTGE 181 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ +I++ V S + I PATR+FQALRI VN+E+ EL +GL +AE L GG L VV+F Sbjct: 182 LAEVIRRVVPRS-GDGIDPATRTFQALRIAVNDELGELERGLEAAEHLLAPGGHLAVVTF 240 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPS---NAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 HSLEDR+VK F SRSG+ +P N A F +++K + P QE+ N R+R Sbjct: 241 HSLEDRVVKSFLKSRSGEASRPSRHVPQAQDNGPAASFTLLSRKAIAPGQEESRANPRAR 300 Query: 308 SAKLRAGMRTVERSIEDDS 326 SAKLRA RT + S Sbjct: 301 SAKLRAAARTEAPAWGAAS 319 >gi|259503028|ref|ZP_05745930.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Lactobacillus antri DSM 16041] gi|259168894|gb|EEW53389.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Lactobacillus antri DSM 16041] Length = 317 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 114/311 (36%), Positives = 177/311 (56%), Gaps = 13/311 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76 +HV VLL++ +A LN P +D T G GG++ + ++ + D+D A+ ++ Sbjct: 7 NHVTVLLKEAVAGLNIRPTGTYVDGTLGGGGHTSAILGQLTTGHLYSFDQDETAIDYNRD 66 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + D + +L + F LQ + GV DGV++DLGVSS Q D RGFS++ Sbjct: 67 QLNDAIAAGKLTLVEDNFRHLQQALAAHGVRRVDGVLYDLGVSSPQFDDAQRGFSYKLDA 126 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ +SA +VVN+ + L RIL GEE+ A +IA I +RRQ P +TT + Sbjct: 127 PLDMRMNQDQSLSAMEVVNEWPYERLVRILYRYGEERFAKQIARKIEQRRQREPIRTTFE 186 Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I++ + + + + HPA +SFQA+RI VN+E+ L + L A L GG + V++ Sbjct: 187 LVDVIKEAIPAAARRHGGHPAKKSFQAVRIAVNDELGALEESLEQALAMLTVGGRISVIT 246 Query: 250 FHSLEDRLVKKFFASRSG---KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 F SLEDRLVK F +S + +IP+ P F+ I +K ++P+ +++A N R+ Sbjct: 247 FQSLEDRLVKTLFREKSSLSADLPQGLPVIPAGMSP-DFKLINRKPILPSAQELAANHRA 305 Query: 307 RSAKLRAGMRT 317 SAKLR + Sbjct: 306 HSAKLRIIEKI 316 >gi|227512227|ref|ZP_03942276.1| S-adenosyl-methyltransferase [Lactobacillus buchneri ATCC 11577] gi|227084621|gb|EEI19933.1| S-adenosyl-methyltransferase [Lactobacillus buchneri ATCC 11577] Length = 315 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 111/310 (35%), Positives = 173/310 (55%), Gaps = 12/310 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76 HV VLL + + L+ P +DAT G GG++ K ++ + D+D A+S Q+ Sbjct: 5 KHVTVLLHEAVDGLDVDPNGTYVDATLGGGGHTTEILKRIDKGHLYSFDQDEEAISYNQQ 64 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +R Y ++ SL F ++ + D+G+ DG+V+DLGVSS Q D RGFS++ Sbjct: 65 HLRQYVENDKLSLIHDNFRNIKVALADQGISKIDGIVYDLGVSSPQFDEAGRGFSYRFEA 124 Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM A V+N+ + L RI GEEK + +IA I + R+ P TT D Sbjct: 125 RLDMRMDQDNPVDAWKVINEWPYEKLVRIFYRYGEEKFSKQIARRIERTREDHPINTTTD 184 Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +LI++ + + + + HPA + FQA+RI VN+E+ L L + + L GG + V++ Sbjct: 185 LVTLIKEAIPAAARRHGGHPAKKVFQAVRIAVNDELSALEDSLEQSLELLAVGGRISVIT 244 Query: 250 FHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 F SLEDRLVK F ++ ++ +IP P ++ IT+K ++P ++++A N R+ Sbjct: 245 FQSLEDRLVKTMFKEKASLPELPPNLPVIPKELQPK-YKLITRKPIIPNEDELADNHRAH 303 Query: 308 SAKLRAGMRT 317 SAKLR RT Sbjct: 304 SAKLRIIERT 313 >gi|314933355|ref|ZP_07840720.1| S-adenosyl-methyltransferase MraW [Staphylococcus caprae C87] gi|313653505|gb|EFS17262.1| S-adenosyl-methyltransferase MraW [Staphylococcus caprae C87] Length = 311 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 99/308 (32%), Positives = 161/308 (52%), Gaps = 9/308 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + HV V+L + I LN V +D T G G++ +IA+D+D A+ Sbjct: 1 MFHHVSVMLNETIDYLNIKEDGVYVDCTLGGAGHALYLLNQLNDEGRLIAIDQDLTALEN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + ++++ + + + F +L + + D + VDG+ +DLGVSS Q+D +RGFS+ Sbjct: 61 AKVVLKEHLHKVTFVHSNFRELTNILKDLNIEKVDGIYYDLGVSSPQLDVPERGFSYHHD 120 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM + +SA +VVN+ + + L +I GEEK + +IA I R+ P +TT Sbjct: 121 AKLDMRMDQTQSLSAFEVVNEWSYEALVKIFYRYGEEKFSKQIARRIEANREQHPIETTL 180 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L +I++ + + HPA R FQA+RI VN+E+ + A +++ G + V+ Sbjct: 181 QLVDVIKEGIPAKARRKGGHPAKRVFQAIRIAVNDELSAFEDSIEQAIESVNINGRISVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDRL K+ F R I + + + +K + T+ED+ N R+R Sbjct: 241 TFHSLEDRLCKQIFQEYEKGPEVPRGIPIIPEGYSPKLKRVNRKPITATEEDLDENNRAR 300 Query: 308 SAKLRAGM 315 SAKLR Sbjct: 301 SAKLRVAE 308 >gi|227509375|ref|ZP_03939424.1| S-adenosyl-methyltransferase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227191087|gb|EEI71154.1| S-adenosyl-methyltransferase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 315 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 110/310 (35%), Positives = 173/310 (55%), Gaps = 12/310 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76 HV VLL + + L+ P +DAT G GG++ K ++ + D+D A+S Q+ Sbjct: 5 KHVTVLLHEAVDGLDVDPNGTYVDATLGGGGHTTEILKRIDKGHLYSFDQDEEAISYNQQ 64 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +R Y ++ +L F ++ + D+G+ DG+V+DLGVSS Q D RGFS++ Sbjct: 65 HLRQYVENDKLTLIHDNFRNIKGALADRGISKIDGIVYDLGVSSPQFDEAGRGFSYRFEA 124 Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM A V+N+ + L RI GEEK + +IA I + R+ P TT D Sbjct: 125 RLDMRMDQDNPVDAWKVINEWPYEKLVRIFYRYGEEKFSKQIARRIERTREDHPINTTTD 184 Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +LI++ + + + + HPA + FQA+RI VN+E+ L L + + L GG + V++ Sbjct: 185 LVTLIKEAIPAAARRHGGHPAKKVFQAVRIAVNDELSALEDSLEQSLELLAVGGRISVIT 244 Query: 250 FHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 F SLEDRLVK F ++ ++ +IP P ++ IT+K ++P ++++A N R+ Sbjct: 245 FQSLEDRLVKTMFKEKASLPELPPNLPVIPKELQPK-YKLITRKPIIPNEDELADNHRAH 303 Query: 308 SAKLRAGMRT 317 SAKLR RT Sbjct: 304 SAKLRIIERT 313 >gi|254486962|ref|ZP_05100167.1| S-adenosyl-methyltransferase MraW [Roseobacter sp. GAI101] gi|214043831|gb|EEB84469.1| S-adenosyl-methyltransferase MraW [Roseobacter sp. GAI101] Length = 330 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 145/326 (44%), Positives = 201/326 (61%), Gaps = 6/326 (1%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRD 67 M++A H PVLL ++A + P LD TFGAGGY+R G++ VIA+DRD Sbjct: 1 MTAASDTPSAPHTPVLLRPLLAAVAPV-YGRWLDGTFGAGGYTRGLLDAGADQVIAVDRD 59 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 P A +Y ++ + Q FS++ +Y + +DGVV DLGVSSMQ+D +RGFSF Sbjct: 60 PLAFEMAASWAGEYGDRLIMQQGVFSRMDEYA--QNLDGVVLDLGVSSMQLDLAERGFSF 117 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRMS G SA+D+VN+A + + IL GEE+ + RIA AIV++R+ AP T Sbjct: 118 MRDGPLDMRMSQEGPSAADIVNEAEEEIIANILFQFGEERASRRIAKAIVRQREEAPITT 177 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T +L+ L++ + SK + HPATRSFQALRI VNNE EL +GL +AE+ALK GG L V Sbjct: 178 TLELARLVESCLPRSKPGQSHPATRSFQALRIAVNNEYGELFEGLMAAERALKPGGQLAV 237 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPS-NAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+FHS+EDR+VK+F +R+G P + P F +K + P +++ N RS Sbjct: 238 VTFHSVEDRMVKRFLTARAGAGGNANRFAPEMESEPPQFIVKKRKAIGPDAQELEENPRS 297 Query: 307 RSAKLRAGMRTVERSIE-DDSFVHLP 331 RSAKLR +RT + D + +P Sbjct: 298 RSAKLRVAIRTDAPAGAVDAKSIGMP 323 >gi|145297477|ref|YP_001140318.1| S-adenosyl-methyltransferase MraW [Aeromonas salmonicida subsp. salmonicida A449] gi|263446607|sp|A4SI48|RSMH_AERS4 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|142850249|gb|ABO88570.1| S-adenosyl-methyltransferase MraW [Aeromonas salmonicida subsp. salmonicida A449] Length = 312 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 122/313 (38%), Positives = 176/313 (56%), Gaps = 14/313 (4%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSC 73 +H+ VLL + + L P + +D TFG GG+SR + +IA+DRDP A++ Sbjct: 4 AAEHITVLLHEAVEGLAIKPDGIYVDGTFGRGGHSRLILQHLGPNGRLIAIDRDPQAIA- 62 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQK 129 E + +F + FS + Y+ ++G VDG + DLGVSS Q+D +RGFSF K Sbjct: 63 --EAAKIQDPRFEIVHGPFSGIVSYLDERGLLGKVDGFLLDLGVSSPQLDDAERGFSFMK 120 Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM SG SA+ + +A+V D+ +L GEE+ A +IA AIV R + P+ T Sbjct: 121 DGPLDMRMDPTSGQSAAQWLARADVDDIAWVLKTFGEERFAKKIARAIVHDRVTEPYVRT 180 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 + L+ +I + SK H ATRSFQA+RI++N+E++E+ L A +AL G L V+ Sbjct: 181 RQLAEMIARVNP-SKEKGKHAATRSFQAIRIYINSELDEIETALNGALQALAPEGRLSVI 239 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI--TKKVVVPTQEDVAFNRRS 306 SFHSLEDRLVK F R + + A A + + K + P++ +V N RS Sbjct: 240 SFHSLEDRLVKHFIRKHEKGPEVPRGIPLTEAQLAGGRKLKSVGKALKPSEHEVTENSRS 299 Query: 307 RSAKLRAGMRTVE 319 RS+ LR R E Sbjct: 300 RSSVLRVAQRLAE 312 >gi|317050381|ref|YP_004111497.1| S-adenosyl-methyltransferase MraW [Desulfurispirillum indicum S5] gi|316945465|gb|ADU64941.1| S-adenosyl-methyltransferase MraW [Desulfurispirillum indicum S5] Length = 316 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 123/324 (37%), Positives = 185/324 (57%), Gaps = 21/324 (6%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGK---VILDATFGAGGYSRSFCKMGS--NVIA 63 MS+ H H+PVL + V++ L PA +++D T G GG+S + +I Sbjct: 1 MSTTFH-----HIPVLADAVLSSLGPALNAEQPLLVDCTVGGGGHSSLILEHCPSVRIIG 55 Query: 64 LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQI 118 +D+DP A+ + + E+F+ + F+QL + V +G ++DLGVSS Q+ Sbjct: 56 IDQDPAALQACSDRL---GERFTPLRGNFAQLHRLLKQANVAPSSVNGFLYDLGVSSHQL 112 Query: 119 DCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177 D +RGFSF GPLDMRM S +SA+DVVN + ++L RI+ GEE+ + R+A I Sbjct: 113 DTPERGFSFLSDGPLDMRMDPSAPLSAADVVNTYSEEELARIIHAYGEERHSRRVARVIA 172 Query: 178 KRRQSAPFQTTQDLSSLI-QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236 R+ PF TT++L+ LI + F +N IHPATR+FQALRI VN E++ + L SA Sbjct: 173 ACRREKPFTTTKELADLIHRDIAKFYRNESIHPATRTFQALRIEVNGELDAITTSLESAL 232 Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVP 295 L+ GG+L V+SFHSLEDR++K+FF + + + H + + +T+K ++ Sbjct: 233 TYLRPGGILAVISFHSLEDRIIKQFFRQHASTCICPPEVWQCRCQHQPLLEILTRKPLIA 292 Query: 296 TQEDVAFNRRSRSAKLRAGMRTVE 319 + + N RSRSAKLR RT Sbjct: 293 DEAEKQLNPRSRSAKLRVARRTSA 316 >gi|82775489|ref|YP_401836.1| S-adenosyl-methyltransferase MraW [Shigella dysenteriae Sd197] gi|309787242|ref|ZP_07681854.1| S-adenosyl-methyltransferase MraW [Shigella dysenteriae 1617] gi|88909218|sp|Q32K10|RSMH_SHIDS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|81239637|gb|ABB60347.1| putative apolipoprotein [Shigella dysenteriae Sd197] gi|308924820|gb|EFP70315.1| S-adenosyl-methyltransferase MraW [Shigella dysenteriae 1617] Length = 313 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 118/312 (37%), Positives = 179/312 (57%), Gaps = 19/312 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ + Sbjct: 6 KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +FS+ FS L +YV ++ +DG++ DLGVSS Q+D +RGFSF + G Sbjct: 66 TI---DDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDG 122 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + G SA++ + A D+ +L GEE+ A RIA AIV+R + P T++ Sbjct: 123 PLDMRMDPTCGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKE 182 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L ++SF Sbjct: 183 LAEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISF 241 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305 HSLEDR+VK+F S + + +++ K ++P +E+VA N R Sbjct: 242 HSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGK--LMPGEEEVAENPR 299 Query: 306 SRSAKLRAGMRT 317 +RS+ LR RT Sbjct: 300 ARSSVLRIAERT 311 >gi|195978690|ref|YP_002123934.1| S-adenosyl-methyltransferase MraW [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|262826706|sp|B4U4K4|RSMH_STREM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|195975395|gb|ACG62921.1| S-adenosyl-methyltransferase MraW [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 316 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 104/320 (32%), Positives = 171/320 (53%), Gaps = 15/320 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 M++ H HV VLL + + +L+ P + +DAT G G+S + ++ D Sbjct: 1 MTNEFH-----HVTVLLHEAVDMLDIKPDGIYVDATLGGSGHSAYLLSLLGDKGHLYCFD 55 Query: 66 RDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120 +D A+ QE ++ Y K Q + + F L+ + + GV DG+++DLGVSS Q+D Sbjct: 56 QDQKAIDHAQEQLKPYIDKGQVTFIKDNFRHLKARLLEHGVTEIDGILYDLGVSSPQLDE 115 Query: 121 GDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS+++ PLDMRM + ++A +VVN + DL RI GE+K + +IA I + Sbjct: 116 RERGFSYKQDAPLDMRMDSQAALTAYEVVNTYDFNDLVRIFFKYGEDKFSKQIARKIEQA 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R P TT +L++LI+ + + HPA + FQA+RI VN+E+ ++ A + Sbjct: 176 RAIKPISTTTELAALIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADASIQQAIEL 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L G + V++FHSLEDRL K F S + + +++K ++P+Q+ Sbjct: 236 LALDGRISVITFHSLEDRLTKHLFKEASTADAPKGLPFIPDELKPKLELVSRKPILPSQK 295 Query: 299 DVAFNRRSRSAKLRAGMRTV 318 ++ N R+ SAKLR + Sbjct: 296 ELMANNRAHSAKLRVARKVR 315 >gi|295098586|emb|CBK87676.1| S-adenosyl-methyltransferase MraW [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 313 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 119/312 (38%), Positives = 180/312 (57%), Gaps = 19/312 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ Q Sbjct: 6 KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGAEGRLLAIDRDPQAIAVAQ 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +FS+ FS L DYV ++G +DG++ DLGVSS Q+D +RGFSF + G Sbjct: 66 TI---DDPRFSIVHGPFSALADYVAERGLTGKIDGILLDLGVSSPQLDDAERGFSFMRDG 122 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + G SA++ + A+ D+ ++ GEE+ RIA AIV+R + P T++ Sbjct: 123 PLDMRMDPTRGQSAAEWLQTADEADIAWVIKTFGEERFGKRIARAIVERNRVEPMTRTKE 182 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ +I K+ HPATR+FQA+RI+VN+E+EE+ L+S+ L GG L ++SF Sbjct: 183 LAEVIAAATPV-KDKHKHPATRTFQAVRIWVNSELEEIELALKSSLDVLAPGGRLSIISF 241 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNRR 305 HSLEDR+VK+F +S + + +++ K ++P +E+VA N R Sbjct: 242 HSLEDRIVKRFMREQSRGPQVPAGLPMTEEQLRKLGGRQLRALGK--LMPGEEEVAENPR 299 Query: 306 SRSAKLRAGMRT 317 +RS+ LR RT Sbjct: 300 ARSSVLRIAERT 311 >gi|292669650|ref|ZP_06603076.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Selenomonas noxia ATCC 43541] gi|292648447|gb|EFF66419.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Selenomonas noxia ATCC 43541] Length = 310 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 113/307 (36%), Positives = 162/307 (52%), Gaps = 10/307 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQ 75 HV VL E+ + LN P +D T G G++ +I +D+D A++ Q Sbjct: 4 HHVSVLPEETLNALNITPNGTYVDCTLGGAGHAGRIAARLSPEGRLIGIDQDEAAIAAAQ 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + D Q +L + F L + GVD GV+FDLG+SS QID +RGFS+ + P Sbjct: 64 ERLADAACQVTLVRDNFRNLSAILAGAGVDSTDGVLFDLGISSPQIDTAERGFSYMQDAP 123 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM +G SA VVN+ +L I GEE+ A RIA I + R++ P +TT L Sbjct: 124 LDMRMDRRAGRSARSVVNEYTAAELMEIFYNYGEERWAKRIAAFIEEERKAHPIETTGQL 183 Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 ++I + V + HPA R FQA+RI VN E+ L L +A +AL+ GG L V++F Sbjct: 184 VAVIDRAVPKKTRAKGGHPAKRVFQAIRIEVNEELTILEGALTAAVRALRPGGRLAVITF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VKK + + H + H + I K + + + A N R++SA Sbjct: 244 HSLEDRIVKKTLKRFAQGCICPPHTPVCVCGHTPELRLI-GKPQMASAVECAENPRAKSA 302 Query: 310 KLRAGMR 316 KLR + Sbjct: 303 KLRTAEK 309 >gi|332522739|ref|ZP_08398991.1| S-adenosyl-methyltransferase MraW [Streptococcus porcinus str. Jelinkova 176] gi|332314003|gb|EGJ26988.1| S-adenosyl-methyltransferase MraW [Streptococcus porcinus str. Jelinkova 176] Length = 316 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 102/320 (31%), Positives = 166/320 (51%), Gaps = 15/320 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65 M+ H H+ VLL + + +L P + +DAT G G+S ++ D Sbjct: 1 MTKEFH-----HITVLLHETVDMLRVKPDGIYVDATLGGAGHSAYLLSQLNEHGHLYCFD 55 Query: 66 RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDC 120 +D A+ Q + + E+ + + F L+ + GVD G+++DLGVSS Q+D Sbjct: 56 QDQKAIDNAQIFLAPFIEKGMVTFIKDNFRHLKSQMQAHGVDSIDGILYDLGVSSPQLDE 115 Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS+++ PLDMRM ++A VVN + DL RI GE++ + +IA I + Sbjct: 116 RERGFSYRQDAPLDMRMDSDASLTAYHVVNDYSFNDLVRIFFRYGEDRFSKQIARKIEQA 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R P +TT +L+ LI+ + + HPA + FQA+RI VN+E+ + L+ A Sbjct: 176 RAIKPIETTTELAELIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAAEESLQQAMDL 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L G + V++FHSLEDRL K+ F S + F+ +++K ++P++E Sbjct: 236 LAVEGHISVITFHSLEDRLTKQLFKEASVVDVPKGIPFIPEEMQPKFELVSRKPILPSKE 295 Query: 299 DVAFNRRSRSAKLRAGMRTV 318 ++A N R+ SAKLR + Sbjct: 296 ELAENNRAHSAKLRVARKIR 315 >gi|323144058|ref|ZP_08078702.1| S-adenosyl-methyltransferase MraW [Succinatimonas hippei YIT 12066] gi|322416171|gb|EFY06861.1| S-adenosyl-methyltransferase MraW [Succinatimonas hippei YIT 12066] Length = 316 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 128/311 (41%), Positives = 173/311 (55%), Gaps = 18/311 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H+PVLL + +A LN P + +DATFG GG+SR K + ALDRD A+ + Sbjct: 5 HIPVLLNETLAGLNINPDGIYVDATFGRGGHSREILKRLNKNGRLYALDRDLSAIEAAKS 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E+FS+ A FSQL++ D G V+G++ D+GVSS Q+D RGFSF K GP Sbjct: 65 IA---DERFSIVHARFSQLKEVCEDFGILGKVNGILMDIGVSSPQLDDASRGFSFDKDGP 121 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S I A+ +VN + KDL I GEE+ A ++A+AIV++R+ PF TT L Sbjct: 122 LDMRMDQSAKIDAALIVNTYDAKDLAYIFKTYGEERFAGKVANAIVRQREKTPFTTTLAL 181 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI ++ K H ATR FQALRI VN+E+EEL L + L G L V+SFH Sbjct: 182 ADLISASIP-GKPGPKHKATRCFQALRIAVNSELEELKSALDGSIDVLDKDGRLCVISFH 240 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT------KKVVVPTQEDVAFNRR 305 SLEDR+VK F S R + ++ A + + + T +++ N R Sbjct: 241 SLEDRIVKTFIRENSEGPKLPRGLPITDEELAELKLKSCTLQKISGAIKATDAEISQNPR 300 Query: 306 SRSAKLRAGMR 316 SRSA LR R Sbjct: 301 SRSAVLRVAAR 311 >gi|322421370|ref|YP_004200593.1| S-adenosyl-methyltransferase MraW [Geobacter sp. M18] gi|320127757|gb|ADW15317.1| S-adenosyl-methyltransferase MraW [Geobacter sp. M18] Length = 312 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 117/308 (37%), Positives = 172/308 (55%), Gaps = 9/308 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H+ VL ++V+ LL P G + +D T G G++ +I DRD A++ + Sbjct: 5 HHISVLPDEVLGLLAPKSGGIYVDGTLGGAGHAGLILAASAPQGQLIGFDRDAEAIAVAK 64 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVV---FDLGVSSMQIDCGDRGFSFQKSGP 132 E + + ++ +FQ FS + + + GVD + DLGVSS Q+D +RGFSFQ P Sbjct: 65 ERLAPFGDRVRIFQRNFSSIAQTLAEIGVDAIDGFVLDLGVSSHQLDKDERGFSFQADAP 124 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM SG SA+D+VN + +L RI+ GEE+ A R+A IVK R+ P +TT L Sbjct: 125 LDMRMDRSSGPSAADLVNTLSEAELNRIIAEYGEERWAKRVASFIVKAREERPIETTMQL 184 Query: 192 SSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+ + +K R+HPATR+FQ LRI VN E++ L GL K LK GG V+SF Sbjct: 185 VDIIKGAIPKAKWEERLHPATRTFQGLRIAVNEELKSLQLGLTDLLKLLKRGGRGAVISF 244 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK+ F + + I ++ +TKK + ++++ N RSRSA Sbjct: 245 HSLEDRIVKEAFRDAAAGCTCPKELPICVCGRVPQYKVLTKKALKAGEKELNANPRSRSA 304 Query: 310 KLRAGMRT 317 +LR + Sbjct: 305 RLRGIEKI 312 >gi|15675533|ref|NP_269707.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes M1 GAS] gi|19746583|ref|NP_607719.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes MGAS8232] gi|21910939|ref|NP_665207.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes MGAS315] gi|28895371|ref|NP_801721.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes SSI-1] gi|71904072|ref|YP_280875.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes MGAS6180] gi|71911181|ref|YP_282731.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes MGAS5005] gi|94988995|ref|YP_597096.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes MGAS9429] gi|94990995|ref|YP_599095.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes MGAS10270] gi|94992888|ref|YP_600987.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes MGAS2096] gi|306826911|ref|ZP_07460211.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes ATCC 10782] gi|13622733|gb|AAK34428.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS] gi|19748798|gb|AAL98218.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232] gi|21905146|gb|AAM80010.1| putative S-adenosyl-methyltransferase MraW [Streptococcus pyogenes MGAS315] gi|28810617|dbj|BAC63554.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1] gi|71803167|gb|AAX72520.1| S-adenosyl-methyltransferase [Streptococcus pyogenes MGAS6180] gi|71853963|gb|AAZ51986.1| S-adenosyl-methyltransferase [Streptococcus pyogenes MGAS5005] gi|94542503|gb|ABF32552.1| S-adenosyl-methyltransferase [Streptococcus pyogenes MGAS9429] gi|94544503|gb|ABF34551.1| S-adenosyl-methyltransferase mraW [Streptococcus pyogenes MGAS10270] gi|94546396|gb|ABF36443.1| S-adenosyl-methyltransferase mraW [Streptococcus pyogenes MGAS2096] gi|304430929|gb|EFM33938.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes ATCC 10782] Length = 337 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 104/328 (31%), Positives = 173/328 (52%), Gaps = 15/328 (4%) Query: 1 MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS- 59 ++ + K M+ H HV VLL + + +L+ P + +DAT G G+S Sbjct: 14 LKYGTIKVMTKEFH-----HVTVLLHETVDMLDIKPDGIYVDATLGGSGHSAYLLSKLGE 68 Query: 60 --NVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGVD---GVVFDLG 112 ++ D+D A+ Q T++ Y K Q + + F L+ + GVD G+++DLG Sbjct: 69 EGHLYCFDQDQKAIDNAQVTLKSYIDKGQVTFIKDNFRHLKARLTALGVDEIDGILYDLG 128 Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASR 171 VSS Q+D +RGFS+++ PLDMRM + +A +VVN DL +I GE+K + + Sbjct: 129 VSSPQLDERERGFSYKQDAPLDMRMDRQSLLTAYEVVNTYPFNDLVKIFFKYGEDKFSKQ 188 Query: 172 IAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQ 230 IA I + R P +TT +L+ LI+ + + HPA + FQA+RI VN+E+ + Sbjct: 189 IARKIEQARAIKPIETTTELAELIKAAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADE 248 Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK 290 ++ A + L G + V++FHSLEDRL K+ F S + + F+ +++ Sbjct: 249 SIQDAMELLALDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPLIPEDMKPKFELVSR 308 Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMRTV 318 K ++P+ ++ N+R+ SAKLR + Sbjct: 309 KPILPSHSELTANKRAHSAKLRVAKKIR 336 >gi|304437331|ref|ZP_07397290.1| S-adenosyl-methyltransferase MraW [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369587|gb|EFM23253.1| S-adenosyl-methyltransferase MraW [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 313 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 123/311 (39%), Positives = 167/311 (53%), Gaps = 10/311 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVS 72 T HV VL E+V+A LN PG + +DAT G G+++ +I +D+D A++ Sbjct: 2 TEFHHVSVLPEEVVAALNVVPGGIYVDATLGGAGHAQRIAAQLSEQGRLIGIDQDETAIA 61 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQK 129 +E + D + Q SL + F L + +GV DG +FDLGVSS QID +RGFS+ + Sbjct: 62 AARERLADVRCQVSLVRDNFRHLTAILAAEGVSSVDGALFDLGVSSPQIDTPERGFSYMQ 121 Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM + SA DVVN + LT I GEE+ A RIA I K RQ+ P TT Sbjct: 122 DAPLDMRMDQRARRSAYDVVNTYTAERLTEIFYTYGEERWAKRIASFIEKERQTHPITTT 181 Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 DL ++I + V + HPA R FQALRI VN+E+ L L +A AL+ GG L V Sbjct: 182 GDLVAVIDRAVPKEVRARGGHPAKRVFQALRIEVNDELGILEGALTAAVDALRIGGRLAV 241 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 ++FHSLEDR+VK + + H I H + I K + + N R+ Sbjct: 242 ITFHSLEDRIVKNTLRRLAQGCICPPHTPICVCGHTPEVRLI-GKARAASAAECRVNTRA 300 Query: 307 RSAKLRAGMRT 317 RSAKLR + Sbjct: 301 RSAKLRVAEKI 311 >gi|296101245|ref|YP_003611391.1| hypothetical protein ECL_00879 [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055704|gb|ADF60442.1| hypothetical protein ECL_00879 [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 313 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 119/312 (38%), Positives = 180/312 (57%), Gaps = 19/312 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ Q Sbjct: 6 KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGAEGRLLAIDRDPQAIAVAQ 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +FS+ FS L DYV ++G +DG++ DLGVSS Q+D +RGFSF + G Sbjct: 66 TI---DDPRFSIVHGPFSALADYVAERGLTGKIDGILLDLGVSSPQLDDAERGFSFMRDG 122 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + G SA++ + A+ D+ ++ GEE+ RIA AIV+R + P T++ Sbjct: 123 PLDMRMDPTRGQSAAEWLQTADEADIAWVIKTFGEERFGKRIARAIVERNRIEPMTRTKE 182 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ +I K+ HPATR+FQA+RI+VN+E+EE+ L+S+ L GG L ++SF Sbjct: 183 LAEVIAAATPV-KDKHKHPATRTFQAVRIWVNSELEEIELALKSSLDVLAPGGRLSIISF 241 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNRR 305 HSLEDR+VK+F +S + + +++ K ++P +E+VA N R Sbjct: 242 HSLEDRIVKRFMREQSRGPQVPAGLPMTEEQLRKLGGRQLRALGK--LMPGEEEVAENPR 299 Query: 306 SRSAKLRAGMRT 317 +RS+ LR RT Sbjct: 300 ARSSVLRIAERT 311 >gi|241895696|ref|ZP_04782992.1| S-adenosyl-methyltransferase [Weissella paramesenteroides ATCC 33313] gi|241871063|gb|EER74814.1| S-adenosyl-methyltransferase [Weissella paramesenteroides ATCC 33313] Length = 314 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 119/313 (38%), Positives = 173/313 (55%), Gaps = 12/313 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73 T HV VLL + I LN P V +DAT G GG+S+ + + D+D A++ Sbjct: 2 TEFKHVTVLLREAIDGLNVQPDGVYVDATLGGGGHSKLLASRLSTGKLWSFDQDETAITY 61 Query: 74 GQETMRD--YKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQ 128 QE + D + + Q F L D + + V DG+V+DLGVSS Q D G RGFS+ Sbjct: 62 NQEHLADEIAAGKVAFIQDNFRHLHDALMAEDVSTIDGIVYDLGVSSPQFDDGQRGFSYN 121 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 PLDMRM S ++A VVN+ + +L RI GEEK A +IA I R+ P +T Sbjct: 122 YDAPLDMRMDQSQSLTARTVVNEWSFHELLRIFSRYGEEKFAKQIARKIEHEREIKPIET 181 Query: 188 TQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T +L ++I+ ++ + + HPA R+FQA+RI VN+E+ + + L A L G + Sbjct: 182 TFELVNIIKDSIPAAARRKGGHPAKRTFQAIRIAVNDELGAVEESLAQALDMLNVHGRIA 241 Query: 247 VVSFHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 V++FHSLEDRLVK F + + A +IP P F+ + +K ++P+ E++A NR Sbjct: 242 VITFHSLEDRLVKTMFKEKVSIPDLPAGLPIIPEEMQP-DFKLVVRKPILPSDEELATNR 300 Query: 305 RSRSAKLRAGMRT 317 R+ SAKLR R Sbjct: 301 RAHSAKLRIIERI 313 >gi|34581504|ref|ZP_00142984.1| hypothetical protein [Rickettsia sibirica 246] gi|28262889|gb|EAA26393.1| unknown [Rickettsia sibirica 246] Length = 307 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 129/307 (42%), Positives = 185/307 (60%), Gaps = 5/307 (1%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQ 75 I HV V+L +++ L+P G+ LD TFGAGGYS++ + V ALDRDP + + Sbjct: 2 IQSHVSVMLNEMLEALSPKAGESYLDCTFGAGGYSKAILESCNCYVTALDRDPNVIKRAE 61 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 E ++Y E+F + F+ + +K DG+V DLGVSSMQ+D DRGFSF GPLDM Sbjct: 62 EIQQNYGERFDFVETNFADSFAKLKEKKFDGIVLDLGVSSMQLDIADRGFSFLHDGPLDM 121 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RMS G+SA + VN A K+L ++ G+E + RIA IV+ R++A +T L+ ++ Sbjct: 122 RMSGQGLSAEEFVNAAEEKELADVIYKYGDESFSRRIAKRIVEYRKTARIDSTTKLAEIV 181 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + ++ F K +I PAT++FQA+RI+VN+E+ EL Q L + + LK G L+VVSFHSLED Sbjct: 182 RSSIGFRK-GKIDPATKTFQAIRIYVNDELGELEQFLVNVKNILKKDGRLVVVSFHSLED 240 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNA---HPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 R+VK FF S K + + + IT K + P+ ++V N R+RSAKLR Sbjct: 241 RIVKNFFKENSEKPVVRSKYAKEDMTIDPNKWLKIITNKALAPSDKEVGLNIRARSAKLR 300 Query: 313 AGMRTVE 319 A E Sbjct: 301 AAKAIYE 307 >gi|152996635|ref|YP_001341470.1| S-adenosyl-methyltransferase MraW [Marinomonas sp. MWYL1] gi|263456400|sp|A6VYK6|RSMH_MARMS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|150837559|gb|ABR71535.1| S-adenosyl-methyltransferase MraW [Marinomonas sp. MWYL1] Length = 312 Score = 369 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 117/312 (37%), Positives = 181/312 (58%), Gaps = 9/312 (2%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFA 70 + T+ +H+ V+L + + +L + +D TFG GG++R ++ D+DP A Sbjct: 1 MTKTMAEHISVMLNESVDMLVTDTNGLYVDGTFGRGGHTRLVLDRLDKGRLLGFDKDPVA 60 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFS 126 + G + + +FS+ Q +F+ + +++ + VDGV+ DLGVSS QID +RGFS Sbjct: 61 IGHG-KLLEQEDARFSIVQDSFANMAEHITNVFGVDRVDGVMMDLGVSSPQIDDAERGFS 119 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 F GPLDMRM+ G SA++ + + KD+ ++ GEE+ + RIA AI + R P Sbjct: 120 FMNDGPLDMRMNPDKGQSAAEWIATVSEKDMADVMYQYGEERFSRRIAKAICEYRSHTPI 179 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT LS +I + + + +PATR+FQ +RI++NNE+ +L GL +A +ALK GG L Sbjct: 180 LTTLQLSKIIAEANPAWEKGK-NPATRAFQGIRIYINNELGDLEIGLEAAAQALKVGGRL 238 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V+SFHSLEDR+VK+F ++ RH+ NAH + K + P+Q +V+ N R Sbjct: 239 AVISFHSLEDRIVKRFMKLQAKGPELPRHLPIRNAHLDIKFKTVGKAIKPSQSEVSENVR 298 Query: 306 SRSAKLRAGMRT 317 SRSA LR R Sbjct: 299 SRSAVLRVLERV 310 >gi|288818267|ref|YP_003432615.1| S-adenosyl-methyltransferase [Hydrogenobacter thermophilus TK-6] gi|288787667|dbj|BAI69414.1| S-adenosyl-methyltransferase [Hydrogenobacter thermophilus TK-6] gi|308751864|gb|ADO45347.1| S-adenosyl-methyltransferase MraW [Hydrogenobacter thermophilus TK-6] Length = 287 Score = 369 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 130/305 (42%), Positives = 182/305 (59%), Gaps = 24/305 (7%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76 H+PVLL++ + LL G V +DAT G GG+++ + VI +DRDP A+ +E Sbjct: 1 MHIPVLLKESVDLLVWRTGGVYVDATVGLGGHTKGILERDPRAFVIGIDRDPHALKLAEE 60 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++D++ +F L+QA F L + + +G VDG +FDLGVS +Q+ RGFSFQ+ PL Sbjct: 61 NLKDFEGRFCLYQANFRYLDEVLKQEGIKEVDGFLFDLGVSMLQLKSP-RGFSFQRDEPL 119 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +A V+N + +DL RIL GEE ASRIA AIV R P +TT +L Sbjct: 120 DMRMNPEDKKTAYQVINTYSERDLVRILKEYGEEPNASRIARAIVMHRTKKPIETTGELV 179 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 S+I + + + R+HPATR FQA+RI VN E+ L + L + LK GG L+V+SFHS Sbjct: 180 SIITSLIPY-RRGRVHPATRIFQAIRIEVNEELISLEEALEKTPRFLKKGGRLVVISFHS 238 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK FF + +F+ +TKK + PT +++ N SRSAKLR Sbjct: 239 LEDRIVKNFFKRHTD----------------IFKLLTKKPIRPTLQEMKKNPASRSAKLR 282 Query: 313 AGMRT 317 AG R Sbjct: 283 AGERI 287 >gi|94501904|ref|ZP_01308414.1| S-adenosyl-methyltransferase [Oceanobacter sp. RED65] gi|94425957|gb|EAT10955.1| S-adenosyl-methyltransferase [Oceanobacter sp. RED65] Length = 308 Score = 369 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 115/308 (37%), Positives = 175/308 (56%), Gaps = 10/308 (3%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H+ VLL + + LN P + +D TFG GG+++ VI +D+DP A++ Sbjct: 1 MSKHITVLLHEAVEALNQDPDGLYVDCTFGRGGHTKLLLDQLSEQGRVIGIDKDPRAIAT 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQK 129 GQE M ++F + +F+QL+++V G + GV+ DLGVSS Q+D +RGFSF + Sbjct: 61 GQELMAQ-DQRFQICHGSFAQLREFVEAHGQGKELSGVLMDLGVSSPQLDEAERGFSFMQ 119 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM+ GI+A + + A+ +++ + GEE+ + R+A AIV+RR PF T Sbjct: 120 DGPLDMRMNTEAGITAQEWIATASEEEIANVFYEFGEERASRRLARAIVERRAIEPFTRT 179 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 DL+ +I+ + N+ HPATRSFQ LRIF+NNE+ +L L + L GG L+V+ Sbjct: 180 LDLAEVIKHAHPRWEKNK-HPATRSFQGLRIFLNNELGDLESVLDETVEMLAKGGRLVVI 238 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDR+VK+F + + K + ++E+V N RSRS Sbjct: 239 SFHSLEDRIVKRFIRDKEKGPQLPPDLPIMEQDAPRPLKHIGKAIKASKEEVEQNVRSRS 298 Query: 309 AKLRAGMR 316 A +R + Sbjct: 299 AIMRVAEK 306 >gi|304392263|ref|ZP_07374205.1| S-adenosyl-methyltransferase MraW [Ahrensia sp. R2A130] gi|303296492|gb|EFL90850.1| S-adenosyl-methyltransferase MraW [Ahrensia sp. R2A130] Length = 394 Score = 369 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 159/338 (47%), Positives = 210/338 (62%), Gaps = 8/338 (2%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPF 69 + + H+PV+LE+V+ L P G I+DATFGAGGYSR+ G+ VI +DRDP Sbjct: 54 APNMSTPDQPHIPVMLEEVLRALRPLDGSTIVDATFGAGGYSRAMLGGGATVIGIDRDPD 113 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFS 126 AV+ Q + ++ +L FSQL G VDGVV D+GVSSMQID +RGFS Sbjct: 114 AVAAAQPMLAEFDGSLTLHHGRFSQLDKICRSAGHETVDGVVADIGVSSMQIDQAERGFS 173 Query: 127 FQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 F + GPLDMRM SG SA+DVVN DLTR++GILGEE+QASR++ IV+ R PF+ Sbjct: 174 FLRDGPLDMRMEQSGPSAADVVNLLPRNDLTRVIGILGEERQASRVSAQIVEDRAKRPFE 233 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 TT L+SL++K + ++IHPATR+FQALRIFVN E+++LAQ L +AE+ L GG L+ Sbjct: 234 TTLQLASLVEKVLSRKAKDKIHPATRTFQALRIFVNGELDQLAQALLAAERVLVPGGRLV 293 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 VV+FHSLEDRLVK F R+ + RHM + F I + + + + N R+ Sbjct: 294 VVTFHSLEDRLVKIFLKDRAEQASGSRHMPVVDITTPTFNQIKRGAISASAAEAEINPRA 353 Query: 307 RSAKLRAGMRTVERSI-----EDDSFVHLPRLPTLSQF 339 RSAKLR +RT E +D S LPRLP + Sbjct: 354 RSAKLRWAVRTEEPPRVNSNGDDLSIFGLPRLPDPASI 391 >gi|320450513|ref|YP_004202609.1| S-adenosyl-methyltransferase MraW [Thermus scotoductus SA-01] gi|320150682|gb|ADW22060.1| S-adenosyl-methyltransferase MraW [Thermus scotoductus SA-01] Length = 286 Score = 369 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 132/305 (43%), Positives = 190/305 (62%), Gaps = 26/305 (8%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCG 74 + I +H+PVL E+V+ LL PG+V +DAT G G+++ + G VI LD+DP AV+ Sbjct: 2 NAITEHIPVLYEEVLNLLQVRPGQVYVDATLGGAGHTKGILERGGLVIGLDQDPEAVARA 61 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +FQ F L++ + + GV G++ DLGVSS ++ RGFS+Q+ G Sbjct: 62 RAL---GLPGLRVFQQNFRHLKEVLQEAGVSQVAGILADLGVSSFHLEDPKRGFSYQREG 118 Query: 132 PLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 PLDMRM G +A +VVN ++DL RIL LGEEKQA RIA AIV+RR+ AP +TT +L Sbjct: 119 PLDMRMGEEGPTAYEVVNTLPLEDLRRILRDLGEEKQAHRIAKAIVERRRKAPIRTTLEL 178 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++++ V F K HPA ++FQA+R++VN+E+ L + LR AE+ L GG L+V++FH Sbjct: 179 AEVVRQAVGFRKAG--HPARKTFQAIRMYVNDELGALEEFLRQAEEVLAPGGRLLVITFH 236 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+VK+F S + +TKK + P+ E+VA N RSRSAKL Sbjct: 237 SLEDRVVKRFLKESS------------------LKVLTKKPITPSPEEVAKNPRSRSAKL 278 Query: 312 RAGMR 316 RA + Sbjct: 279 RAAEK 283 >gi|218532980|ref|YP_002423796.1| S-adenosyl-methyltransferase MraW [Methylobacterium chloromethanicum CM4] gi|263456414|sp|B7KU77|RSMH_METC4 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|218525283|gb|ACK85868.1| S-adenosyl-methyltransferase MraW [Methylobacterium chloromethanicum CM4] Length = 353 Score = 369 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 148/326 (45%), Positives = 199/326 (61%), Gaps = 8/326 (2%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQ 75 HVPVLL +V+A L+ + +D TFGAGGY+R+ + G VIA+DRDP A+ G Sbjct: 20 ARHVPVLLAEVLAALSLDRPGLAVDGTFGAGGYTRALLEAGPEVRVIAIDRDPTAIRGGA 79 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + + + L Q F +L + D+ D VV D+GVSSMQID RGFSF++ GP Sbjct: 80 DLVNAFGGRLRLVQGRFGELDTLIADQNEAQADWVVLDIGVSSMQIDEAQRGFSFRQDGP 139 Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 LDMRM G SA+D+VN L IL GEE+++ +A AIV+ R+ AP TT L+ Sbjct: 140 LDMRMGGEGPSAADLVNGEEETTLADILYHFGEERRSRAVARAIVEARRRAPIVTTAQLA 199 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 L+ V + IHPATRSFQ LRI VN+E+ EL +GL +AE+ LK GG L VV+FHS Sbjct: 200 DLVAGVVRPEPGSPIHPATRSFQGLRIAVNDELGELVRGLHAAERVLKPGGRLAVVTFHS 259 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRSAK 310 LEDR+VK+FF++RSG+ +P PA F+ +TK V+P++ + N RSRSAK Sbjct: 260 LEDRIVKQFFSARSGRAAQASRHVPGVERPAPKSFKLVTKGPVLPSEAETDVNPRSRSAK 319 Query: 311 LRAGMRTVERSIEDDSFVH-LPRLPT 335 LRAG RT + S + L LP Sbjct: 320 LRAGERTDAPAPPPLSAIETLASLPA 345 >gi|313680156|ref|YP_004057895.1| S-adenosyl-methyltransferase mraw [Oceanithermus profundus DSM 14977] gi|313152871|gb|ADR36722.1| S-adenosyl-methyltransferase MraW [Oceanithermus profundus DSM 14977] Length = 286 Score = 369 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 125/304 (41%), Positives = 178/304 (58%), Gaps = 25/304 (8%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQ 75 T H PVLL + + LLN P V +DATFG GG++R + G V+A+D+DP A Sbjct: 4 TETTHEPVLLHESLDLLNVQPEGVYVDATFGGGGHTRGIVERGGQVVAIDQDPDAHERA- 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + +F ++ F L+ + GV G++ DLGVSS D +RGFS+Q+ GP Sbjct: 63 ERLGGVAIRF--VRSNFRDLEAVLDALGVPSVQGILADLGVSSYHFDDPERGFSYQREGP 120 Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 LDMRM G +A++VVN ++L ++ GEE+Q+ RIA AIV+ R+ AP TT L+ Sbjct: 121 LDMRMGHEGPTAAEVVNTLGEEELAELIWRYGEERQSRRIARAIVEARKEAPIATTTQLA 180 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++++ V F K HPA ++FQALRI+VN+E+ L L +A + L GG L+V+SFHS Sbjct: 181 EIVRRAVGFRKAG--HPARKTFQALRIYVNDELGALEALLEAAGRVLAPGGRLVVISFHS 238 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 +EDR+VK F F+ +TKK ++P E+ A N R+RSAKLR Sbjct: 239 MEDRIVKHFLKGD-----------------PRFRVLTKKPLMPGPEEAARNPRARSAKLR 281 Query: 313 AGMR 316 AG R Sbjct: 282 AGER 285 >gi|165933443|ref|YP_001650232.1| 16S rRNA m(4)C1402 methyltranserfase [Rickettsia rickettsii str. Iowa] gi|189082216|sp|B0BYA0|RSMH_RICRO RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262831529|sp|A8GSS6|RSMH_RICRS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|165908530|gb|ABY72826.1| S-adenosyl-methyltransferase [Rickettsia rickettsii str. Iowa] Length = 307 Score = 369 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 129/307 (42%), Positives = 185/307 (60%), Gaps = 5/307 (1%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQ 75 I HV V+L +++ L+P G+ LD TFGAGGYS++ + V ALDRDP + + Sbjct: 2 IQSHVSVMLNEMLEALSPKAGESYLDCTFGAGGYSKAILESCNCYVTALDRDPNVIKRAE 61 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 E ++Y E+F + F+ + +K DG+V DLGVSSMQ+D DRGFSF GPLDM Sbjct: 62 EIQQNYGERFDFVETNFADSFAKLKEKKFDGIVLDLGVSSMQLDIADRGFSFLHDGPLDM 121 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RMS G+SA + VN A K+L ++ G+E + RIA IV+ R++A +T L+ ++ Sbjct: 122 RMSGQGLSAEEFVNAAEEKELADVIYKYGDESFSRRIAKRIVEYRKTARIDSTGKLAEIV 181 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + ++ F K +I PAT++FQA+RI+VN+E+ EL Q L + + LK G L+VVSFHSLED Sbjct: 182 RSSIGFRK-GKIDPATKTFQAIRIYVNDELGELEQFLVNVKNILKKDGRLVVVSFHSLED 240 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNA---HPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 R+VK FF S K + + + IT K + P+ ++V N R+RSAKLR Sbjct: 241 RIVKNFFKENSEKPVVRSKYAKDDMTIDPNKWLKIITNKALAPSDKEVGLNIRARSAKLR 300 Query: 313 AGMRTVE 319 A E Sbjct: 301 AAKAIYE 307 >gi|319404518|emb|CBI78123.1| S-adenosyl-methyltransferase [Bartonella rochalimae ATCC BAA-1498] Length = 349 Score = 369 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 162/325 (49%), Positives = 209/325 (64%), Gaps = 3/325 (0%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQE 76 + H+PVLL+ V+A L P G ++D TFGAGGYS + G+ VIALDRDP A+ GQ Sbjct: 25 VERHIPVLLQSVLAELAPLAGSKVIDGTFGAGGYSCALLNAGAEVIALDRDPHAIREGQA 84 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + + + L QA FSQL V + VD V+ D+GVSSMQ+D +RGFSFQK GPLDMR Sbjct: 85 LVDQFFPRLRLVQAEFSQLDHIVEE-KVDAVILDIGVSSMQLDEPERGFSFQKDGPLDMR 143 Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 M G +A+DVVN DL ++ GEE+ A RIA I KRR PF T DL+ ++ Sbjct: 144 MGQIGFTAADVVNYLKADDLAQLFKTFGEERYAVRIARMIEKRRCIRPFLRTIDLAHAVE 203 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 + + IHPATR FQALRI+VNNE+ ELA GL +AE+ LKAGG L VVSFHSLEDR Sbjct: 204 SLIGRKPGDHIHPATRVFQALRIYVNNELAELACGLFAAERVLKAGGRLAVVSFHSLEDR 263 Query: 257 LVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 +VKKFF++RSG R++ + PA F + K V PTQE++ N R+RSA+LR G+R Sbjct: 264 MVKKFFSARSGHKKGSRYLPEIKSAPATFIPLFKGVKTPTQEELQQNPRARSARLRMGVR 323 Query: 317 TVERSIEDDSFVHLPRLPTLSQFRG 341 T E +I D + L L + +F G Sbjct: 324 TQEVAIAAD--MKLFGLAEIVRFEG 346 >gi|219870383|ref|YP_002474758.1| S-adenosyl-methyltransferase MraW [Haemophilus parasuis SH0165] gi|263456048|sp|B8F3A8|RSMH_HAEPS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|219690587|gb|ACL31810.1| S-adenosyl-methyltransferase MraW involved in cell envelope biogenesis [Haemophilus parasuis SH0165] Length = 312 Score = 369 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 114/310 (36%), Positives = 172/310 (55%), Gaps = 16/310 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H+ VLL + + L P + +D TFG GG+SR +IA+DRDP A++ Sbjct: 6 KHITVLLHEAVDGLAIKPNGIYVDGTFGRGGHSRLILSKLGEQGRLIAIDRDPRAIAEAN 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +F + + FS + D + +DG++ DLGVSS Q+D +RGFSF + G Sbjct: 66 TI---TDPRFQIVHSAFSSIPDICDELNLVGKIDGILLDLGVSSPQLDEAERGFSFMRDG 122 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ--SAPFQTT 188 PLDMRM + G+SA + + Q +V DL +L GEE+ A RIA A+V + + T Sbjct: 123 PLDMRMDTTKGLSAMEWLAQVSVDDLAWVLKEFGEERFAKRIAQAVVSYNKSATEKISRT 182 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ +I V F K+ HPATRSFQA+RI++N+E++EL + L SA L G L ++ Sbjct: 183 LQLAQIIADVVPF-KDKHKHPATRSFQAIRIYINSELDELEKALNSALTVLAPEGRLSII 241 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 SFHSLEDR+VK+F +S + ++ S + + K ++P++ ++ N RS Sbjct: 242 SFHSLEDRMVKQFMRKQSKGETVPKGLPILESELNKNIPLKTVGKAIMPSEAEIEANPRS 301 Query: 307 RSAKLRAGMR 316 RSA LR + Sbjct: 302 RSAVLRVAEK 311 >gi|78356081|ref|YP_387530.1| S-adenosyl-methyltransferase MraW [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|88909199|sp|Q313R1|RSMH_DESDG RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|78218486|gb|ABB37835.1| methyltransferase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 325 Score = 369 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 119/325 (36%), Positives = 170/325 (52%), Gaps = 11/325 (3%) Query: 4 KSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSN 60 + H HVPVLL++V+ L+P G LD T G GG+S + + Sbjct: 1 MTADNGHDNNRHQYTAHVPVLLDEVLHYLSPVRGGRYLDGTLGLGGHSEAIMNRCGGDAW 60 Query: 61 VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQ 117 ++ LDRD A++ + + ++ + A +SQ + + G +DG + D+GVSSMQ Sbjct: 61 LLGLDRDREALAAASGRLAPFGDRVTTRYACYSQFAAIMDEIGWTGLDGALIDIGVSSMQ 120 Query: 118 IDCGDRGFSFQKSGPLDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175 ID RGFSF GPLDMRM SG SA +VN +V+ L I+ GE+ A RIA A Sbjct: 121 IDTPSRGFSFYADGPLDMRMDPSGDMPSAGVLVNTGSVERLKEIISTYGEDPMAGRIARA 180 Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLR 233 IV R P +TT L+ +++ + HPATR+FQALR+ VN E+EEL L Sbjct: 181 IVDARARNPIETTARLAEVVESAYPAKWRAKSRNHPATRTFQALRMAVNGELEELETFLA 240 Query: 234 SAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKV 292 + + GG ++V++FHSLEDRLVK F + + RH + +T+K Sbjct: 241 AIVDRMNPGGRIVVITFHSLEDRLVKNAFRDEAKGCLCPRHIPVCVCGKKPRVNVLTRKP 300 Query: 293 VVPTQEDVAFNRRSRSAKLRAGMRT 317 V Q ++ N R+ SAKLRA R Sbjct: 301 VTAGQAELQANSRASSAKLRAAERI 325 >gi|225867991|ref|YP_002743939.1| S-adenosyl-methyltransferase MraW [Streptococcus equi subsp. zooepidemicus] gi|262827289|sp|C0MGV8|RSMH_STRS7 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|225701267|emb|CAW98245.1| S-adenosyl-methyltransferase MraW [Streptococcus equi subsp. zooepidemicus] Length = 316 Score = 369 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 104/320 (32%), Positives = 171/320 (53%), Gaps = 15/320 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 M++ H HV VLL + + +L+ P + +DAT G G+S + ++ D Sbjct: 1 MTNEFH-----HVTVLLHEAVDMLDIKPDGIYVDATLGGSGHSAYLLSLLGDKGHLYCFD 55 Query: 66 RDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120 +D A+ QE ++ Y K Q + + F L+ + + GV DG+++DLGVSS Q+D Sbjct: 56 QDQKAIDHAQEQLKPYIDKGQVTFIKDNFRHLKVRLLEHGVTEIDGILYDLGVSSPQLDE 115 Query: 121 GDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS+++ PLDMRM + ++A +VVN + DL RI GE+K + +IA I + Sbjct: 116 RERGFSYKQDAPLDMRMDSQAALTAYEVVNTYDFNDLVRIFFKYGEDKFSKQIARKIEQA 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R P TT +L++LI+ + + HPA + FQA+RI VN+E+ ++ A + Sbjct: 176 RAIKPISTTTELAALIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADASIQQAIEL 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L G + V++FHSLEDRL K F S + + +++K ++P+Q+ Sbjct: 236 LALDGRISVITFHSLEDRLTKHLFKEASTADAPKGLPFIPDELKPKLELVSRKPILPSQK 295 Query: 299 DVAFNRRSRSAKLRAGMRTV 318 ++ N R+ SAKLR + Sbjct: 296 ELMANNRAHSAKLRVARKVR 315 >gi|157964706|ref|YP_001499530.1| S-adenosyl-methyltransferase MraW [Rickettsia massiliae MTU5] gi|167011838|sp|A8F247|RSMH_RICM5 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|157844482|gb|ABV84983.1| S-adenosyl-methyltransferase MraW [Rickettsia massiliae MTU5] Length = 307 Score = 369 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 129/307 (42%), Positives = 185/307 (60%), Gaps = 5/307 (1%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQ 75 I HVPV+L +++ L+P G+ LD TFGAGGYS++ + V ALDRDP + + Sbjct: 2 IQSHVPVMLNEMLEALSPKDGESYLDCTFGAGGYSKAILESCNCYVTALDRDPNVIKRAE 61 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 E ++Y E+F + F+ + +K DG+V DLGVSSMQ+D DRGFSF GPLDM Sbjct: 62 EIQQNYGERFDFVETNFADSFAKLKEKKFDGIVLDLGVSSMQLDIADRGFSFLHDGPLDM 121 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RMS G+SA + VN A K+L ++ G+E + RIA IV+ R++A +T L+ ++ Sbjct: 122 RMSGQGLSAEEFVNTAEEKELADVIYKYGDESFSRRIAKRIVEYRKTARIDSTGKLAEIV 181 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + ++ F K +I PAT++FQA+RI+VN+E+ EL Q L + + LK G L+VVSFHSLED Sbjct: 182 RSSIGFRK-GKIDPATKTFQAIRIYVNDELGELEQFLVNVKNILKKDGRLVVVSFHSLED 240 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNA---HPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 R+VK FF S K + + + IT K + + ++V N R+RSAKLR Sbjct: 241 RIVKNFFKENSEKPVVRSKYAKDDMTIDPNKWLKIITNKALASSDKEVGLNIRARSAKLR 300 Query: 313 AGMRTVE 319 A E Sbjct: 301 AAKAIYE 307 >gi|167854991|ref|ZP_02477765.1| S-adenosyl-methyltransferase MraW [Haemophilus parasuis 29755] gi|167853839|gb|EDS25079.1| S-adenosyl-methyltransferase MraW [Haemophilus parasuis 29755] Length = 312 Score = 369 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 114/310 (36%), Positives = 171/310 (55%), Gaps = 16/310 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H+ VLL + + L P + +D TFG GG+SR +IA+DRDP A++ Sbjct: 6 KHITVLLHEAVDGLAIKPNGIYVDGTFGRGGHSRLILSKLGEQGRLIAIDRDPRAIAEAN 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +F + + FS + D + +DG++ DLGVSS Q+D +RGFSF + G Sbjct: 66 TI---TDPRFQIVHSAFSSIPDICDELNLVGKIDGILLDLGVSSPQLDEAERGFSFMRDG 122 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ--SAPFQTT 188 PLDMRM + G+SA + + Q +V DL +L GEE+ A RIA A+V + + T Sbjct: 123 PLDMRMDTTKGLSAMEWLAQVSVDDLAWVLKEFGEERFAKRIAQAVVSYNKSATEKISRT 182 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L +I V F K+ HPATRSFQA+RI++N+E++EL + L SA L G L ++ Sbjct: 183 LQLVQIIADVVPF-KDKHKHPATRSFQAIRIYINSELDELEKALNSALTVLAPEGRLSII 241 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 SFHSLEDR+VK+F +S + ++ S + + K ++P++ ++ N RS Sbjct: 242 SFHSLEDRMVKQFMRKQSKGETVPKGLPILESELNKNIPLKTVGKAIMPSEAEIEANPRS 301 Query: 307 RSAKLRAGMR 316 RSA LR + Sbjct: 302 RSAVLRVAEK 311 >gi|317132992|ref|YP_004092306.1| S-adenosyl-methyltransferase MraW [Ethanoligenens harbinense YUAN-3] gi|315470971|gb|ADU27575.1| S-adenosyl-methyltransferase MraW [Ethanoligenens harbinense YUAN-3] Length = 312 Score = 369 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 117/303 (38%), Positives = 172/303 (56%), Gaps = 6/303 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77 H VLL + I L P V +D T G GG+S + +IALD DP AV E Sbjct: 6 HQSVLLHESIEALAIRPDGVYVDGTAGGGGHSAAIAAGLESGRLIALDADPDAVRAAGER 65 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + + + + Q+ F ++ + D G VDG++ DLGVSS Q D RGFS++ PLD Sbjct: 66 LAPFGSKACVVQSNFRDMKRVLADLGIAEVDGILLDLGVSSHQFDTPARGFSYRADAPLD 125 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRMS SG+ A +++ A+ +L RIL GEE+ A RIA AI KRR++ P +TT +LS L Sbjct: 126 MRMSQSGLGARELLATASYAELVRILREYGEERFAPRIAAAICKRRETKPLETTFELSEL 185 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 +++ HPA ++FQALR+ VN E+E L+ L A L+ GG L +++FHSLE Sbjct: 186 VREAYPAPARRSGHPARKTFQALRMAVNGELESLSVLLDDALALLRPGGRLCIITFHSLE 245 Query: 255 DRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 DR+VK+ F S + + + + + K+ V+P+ E++ N+RSRSA+LR Sbjct: 246 DRMVKQRFLSWAQGCICPPDFPVCVCGRKPQVRVVYKRGVLPSAEEIEANQRSRSARLRV 305 Query: 314 GMR 316 + Sbjct: 306 AEK 308 >gi|320179644|gb|EFW54593.1| rRNA small subunit methyltransferase H [Shigella boydii ATCC 9905] Length = 313 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 119/312 (38%), Positives = 180/312 (57%), Gaps = 19/312 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H VLL++ + LN PG + +D TFG GG+SR ++A+DRDP A++ + Sbjct: 6 KHTTVLLDEAVNGLNIRPGGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +FS+ FS L +YV ++ +DG++ DLGVSS Q+D +RGFSF + G Sbjct: 66 TI---DDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDG 122 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + G SA++ + A D+ +L GEE+ A RIA AIV+R + P T++ Sbjct: 123 PLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKE 182 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L ++SF Sbjct: 183 LAEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISF 241 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305 HSLEDR+VK+F S + + +++ K ++P +E+VA N R Sbjct: 242 HSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGK--LMPGEEEVAENPR 299 Query: 306 SRSAKLRAGMRT 317 +RS+ LR RT Sbjct: 300 ARSSVLRIAERT 311 >gi|237807292|ref|YP_002891732.1| S-adenosyl-methyltransferase MraW [Tolumonas auensis DSM 9187] gi|262825943|sp|C4LA17|RSMH_TOLAT RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|237499553|gb|ACQ92146.1| S-adenosyl-methyltransferase MraW [Tolumonas auensis DSM 9187] Length = 308 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 120/308 (38%), Positives = 180/308 (58%), Gaps = 14/308 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 +H+ VLL++ + L P + +D TFG GG+SR + + A+DRDP AV+ + Sbjct: 2 EHITVLLQEAVDGLAIRPDGIYVDGTFGRGGHSRLILQQLGPQGRLYAIDRDPQAVAVAK 61 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E +F + FS L +Y+ ++G VDG++ DLGVSS Q+D +RGFSF G Sbjct: 62 EW---QDPRFEIISGPFSSLHEYMAERGLLGKVDGLLLDLGVSSPQLDEAERGFSFMNDG 118 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM G SA++ + A+V D+ +L GEE+ A+RIA AIV R + P+ T+ Sbjct: 119 PLDMRMDPLHGESAAEWLLHADVDDIAWVLRTYGEERFANRIARAIVADRVTTPYTRTRQ 178 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ +I + V + ++ HPATRSFQALRI VN E++E+ + L+++ L GG L V+SF Sbjct: 179 LAEMIARVVPNKEKHK-HPATRSFQALRIHVNQELKEIEETLKASLSVLAPGGRLAVISF 237 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT--KKVVVPTQEDVAFNRRSRS 308 HSLEDR+VK+F + + R + + Q++ K + P +V+ N RSRS Sbjct: 238 HSLEDRIVKQFIRQQEKGIQPPRGLPITEDQIRKTQTLHSVGKAIKPADSEVSDNVRSRS 297 Query: 309 AKLRAGMR 316 + LR R Sbjct: 298 SVLRVAER 305 >gi|206580699|ref|YP_002240446.1| S-adenosyl-methyltransferase MraW [Klebsiella pneumoniae 342] gi|288937146|ref|YP_003441205.1| S-adenosyl-methyltransferase MraW [Klebsiella variicola At-22] gi|290512569|ref|ZP_06551935.1| S-adenosyl-methyltransferase MraW [Klebsiella sp. 1_1_55] gi|263456192|sp|B5Y1V5|RSMH_KLEP3 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|206569757|gb|ACI11533.1| S-adenosyl-methyltransferase MraW [Klebsiella pneumoniae 342] gi|288891855|gb|ADC60173.1| S-adenosyl-methyltransferase MraW [Klebsiella variicola At-22] gi|289774910|gb|EFD82912.1| S-adenosyl-methyltransferase MraW [Klebsiella sp. 1_1_55] Length = 313 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 120/312 (38%), Positives = 182/312 (58%), Gaps = 19/312 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ + Sbjct: 6 KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSRLGAEGRLLAIDRDPQAIAVAK 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +FS+ FSQL DYV ++ +DG++ DLGVSS Q+D +RGFSF + G Sbjct: 66 TI---DDPRFSIVHGPFSQLADYVDERNLTGKIDGILLDLGVSSPQLDDAERGFSFMRDG 122 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + G SA++ + A D+ ++ GEE+ RIA AIV+R + P T++ Sbjct: 123 PLDMRMDPTRGQSAAEWLQTAEEADIAWVIKTFGEERFGKRIARAIVERNRIEPMTRTKE 182 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ +I + K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L ++SF Sbjct: 183 LAEVIAAAMPV-KDKHKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSIISF 241 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305 HSLEDR+VK+F +S + + A +++ K ++P +E+VA N R Sbjct: 242 HSLEDRIVKRFMREQSRGPQVPAGIPMTEAQLKKLGGRELRALGK--LMPGEEEVAENPR 299 Query: 306 SRSAKLRAGMRT 317 +RS+ LR RT Sbjct: 300 ARSSVLRIAERT 311 >gi|319406014|emb|CBI79645.1| S-adenosyl-methyltransferase [Bartonella sp. AR 15-3] Length = 332 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 164/322 (50%), Positives = 209/322 (64%), Gaps = 3/322 (0%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+PVLL+ V+A L P G ++D TFGAGGYSR+ G+ VIALDRDP AV GQ + Sbjct: 11 HIPVLLQSVLAGLAPLAGAKVIDGTFGAGGYSRALLNAGAEVIALDRDPQAVREGQALVD 70 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 + + L QA FSQL V + VD V+ D+GVSSMQ+D +RGFSFQK GPLDMRM+ Sbjct: 71 QFFPRLRLVQAEFSQLDHIV-EGLVDAVILDIGVSSMQLDEAERGFSFQKDGPLDMRMAQ 129 Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199 +G +A+DVVN V DL ++ LGEE+ A RIA I KRR PF T DL+ I+ + Sbjct: 130 TGFTAADVVNYLKVDDLAQLFKTLGEERYAVRIARMIEKRRCIRPFLRTIDLAHAIEALI 189 Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259 N IHPATR FQALRI+VNNE+ ELA L + E+ LKAGG L VVSFHSLEDR+VK Sbjct: 190 GRKPGNHIHPATRVFQALRIYVNNELNELACALFAVERVLKAGGRLAVVSFHSLEDRMVK 249 Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319 KF ++RSG R++ + PA F + K V TQE++ N R+RSA+LR G+RT E Sbjct: 250 KFLSARSGHKKGSRYLPEIKSVPATFIPLYKGVKTATQEELQKNPRARSARLRIGVRTQE 309 Query: 320 RSIEDDSFVHLPRLPTLSQFRG 341 +I D + L L ++ F G Sbjct: 310 AAIAAD--MKLFGLAEIAHFEG 329 >gi|315038044|ref|YP_004031612.1| S-adenosyl-methyltransferase MraW [Lactobacillus amylovorus GRL 1112] gi|312276177|gb|ADQ58817.1| S-adenosyl-methyltransferase MraW [Lactobacillus amylovorus GRL 1112] gi|327183324|gb|AEA31771.1| 16S rRNA m(4)C1402 methyltranserfase [Lactobacillus amylovorus GRL 1118] Length = 315 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 106/311 (34%), Positives = 164/311 (52%), Gaps = 13/311 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76 H VLL + I L P G + +DATFG GG++R +I D+D +A+ + Sbjct: 4 KHTSVLLHETIDNLKPKNGGLYVDATFGGGGHARYLLSKIDTGTLIGFDQDEYAIKSAKL 63 Query: 77 TMRDY-----KEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSF 127 D + + L F+ LQ + + G+DG+ +DLGVSS Q D DRGFS+ Sbjct: 64 NFADLLEPDSEPKLKLVHDNFTNLQRDLVELGYSDGIDGIYYDLGVSSPQFDQADRGFSY 123 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + + LDMRM S + A +VN + K+L IL G+EK + +IA IV+RR+ P Sbjct: 124 RYNARLDMRMDQSQSLDAYQLVNTLSQKELADILYKYGDEKFSRQIARKIVERRKDKPIV 183 Query: 187 TTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT +L +I++ + ++ HPA +SFQALR+ VN+E++ L L A K L+ GG + Sbjct: 184 TTFELVDIIKEAIPAYARRTGGHPAKKSFQALRVAVNHELDVLQASLEEAIKVLRPGGRI 243 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V++F S ED++VKK F S + + + + +K + + ++ N R Sbjct: 244 SVITFQSHEDKIVKKIFKKYSEVEVPRGMPFVPDDMKPTLRLVNRKPITASTSELEKNNR 303 Query: 306 SRSAKLRAGMR 316 S SAKLR + Sbjct: 304 SHSAKLRVAEK 314 >gi|237729380|ref|ZP_04559861.1| S-adenosyl-methyltransferase MraW [Citrobacter sp. 30_2] gi|226909109|gb|EEH95027.1| S-adenosyl-methyltransferase MraW [Citrobacter sp. 30_2] Length = 313 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 120/312 (38%), Positives = 183/312 (58%), Gaps = 19/312 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ + Sbjct: 6 KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +FS+ FS L DYV ++G +DG++ DLGVSS Q+D +RGFSF + G Sbjct: 66 TI---TDPRFSIVHGPFSALADYVAERGLTGKIDGILLDLGVSSPQLDDAERGFSFMRDG 122 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + G SA++ + A+ D+ ++ GEE+ RIA AIV+R + P T++ Sbjct: 123 PLDMRMDPTRGQSAAEWLQTADEADIAWVIKTFGEERFGKRIARAIVERNRIEPMTRTKE 182 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ +I + K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L ++SF Sbjct: 183 LAEVIAAAMPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSIISF 241 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305 HSLEDR+VK+F +S + + A +++ K ++P +E+VA N R Sbjct: 242 HSLEDRIVKRFMREQSRGPQVPAGIPMTEAQIKKLGGRELRALGK--MMPGEEEVAENPR 299 Query: 306 SRSAKLRAGMRT 317 +RS+ LR RT Sbjct: 300 ARSSVLRIAERT 311 >gi|325956496|ref|YP_004291908.1| 16S rRNA m(4)C1402 methyltranserfase [Lactobacillus acidophilus 30SC] gi|325333061|gb|ADZ06969.1| 16S rRNA m(4)C1402 methyltranserfase [Lactobacillus acidophilus 30SC] Length = 315 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 107/311 (34%), Positives = 165/311 (53%), Gaps = 13/311 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76 H VLL + I L P G + +DATFG GG++R +I D+D +A+ + Sbjct: 4 KHTSVLLHETIDNLKPKNGGLYVDATFGGGGHARYLLSKIDTGTLIGFDQDEYAIKSAKL 63 Query: 77 TMRDY-----KEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSF 127 D + + L F+ LQ + + G+DG+ +DLGVSS Q D DRGFS+ Sbjct: 64 NFADLLEPDSEPKLKLVHDNFTNLQRDLVELGYSDGIDGIYYDLGVSSPQFDQADRGFSY 123 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + + LDMRM S + A +VN + K+L IL G+EK + +IAH IV+RR+ P Sbjct: 124 RYNARLDMRMDQSQSLDAYQLVNTLSQKELADILYKYGDEKFSRQIAHKIVERRKDKPIV 183 Query: 187 TTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT +L +I++ + ++ HPA +SFQALR+ VN+E++ L L A K L+ GG + Sbjct: 184 TTFELVDIIKEAIPAYARRTGGHPAKKSFQALRVAVNHELDVLQASLEEAIKVLRPGGRI 243 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V++F S ED++VKK F S + + + + +K + + ++ N R Sbjct: 244 SVITFQSHEDKIVKKIFKKYSEVEVPRGMPFVPDDMKPTLRLVNRKPITASTSELEKNNR 303 Query: 306 SRSAKLRAGMR 316 S SAKLR + Sbjct: 304 SHSAKLRVAEK 314 >gi|326797507|ref|YP_004315326.1| ribosomal RNA small subunit methyltransferase H [Sphingobacterium sp. 21] gi|326548271|gb|ADZ76656.1| Ribosomal RNA small subunit methyltransferase H [Sphingobacterium sp. 21] Length = 303 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 116/306 (37%), Positives = 169/306 (55%), Gaps = 16/306 (5%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCG 74 G H+PV+L++ I L P V +D TFG GG+S + +IA D+DP A++ Sbjct: 4 GYHLPVMLQECIEALAIKPNGVYVDVTFGGGGHSSAIIQHLGEEGRLIAFDQDPDALNNA 63 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E+F+L F L++ + +G VDG++ DLGVSS Q D +RGFS + Sbjct: 64 L-----PDERFTLIHQNFRYLKNNLRLQGLKQVDGILADLGVSSHQFDEAERGFSIRFDA 118 Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM G + A ++N + +DL RI G+ GE + A +A IV R S P T D Sbjct: 119 DLDMRMDRVGELDAKGILNSYSEEDLHRIFGMYGEVQNAKSLAKVIVTSRLSRPINTVSD 178 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L S++ K V K N+ + FQALRI VN E+E L + L A+ LK GG L+V+S+ Sbjct: 179 LKSIVSKLVPRGKENK--YYAQLFQALRIEVNKELEALQEFLVQAQAVLKPGGRLVVMSY 236 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDRLVK F A K + + P F +++K ++ +++++ N R+RSAK Sbjct: 237 HSLEDRLVKNFMAKGKFKGEVEKDFYGNEIKP--FMLVSRKAIIASEDEIRQNNRARSAK 294 Query: 311 LRAGMR 316 LR + Sbjct: 295 LRVAEK 300 >gi|283835144|ref|ZP_06354885.1| S-adenosyl-methyltransferase MraW [Citrobacter youngae ATCC 29220] gi|291069444|gb|EFE07553.1| S-adenosyl-methyltransferase MraW [Citrobacter youngae ATCC 29220] Length = 313 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 120/312 (38%), Positives = 183/312 (58%), Gaps = 19/312 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ + Sbjct: 6 KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +FS+ FS L DYV ++G +DG++ DLGVSS Q+D +RGFSF + G Sbjct: 66 TI---TDPRFSIVHGPFSALADYVAERGLTGKIDGILLDLGVSSPQLDDAERGFSFMRDG 122 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + G SA++ + A+ D+ ++ GEE+ RIA AIV+R + P T++ Sbjct: 123 PLDMRMDPTRGQSAAEWLQTADEADIAWVIKTFGEERFGKRIARAIVERNRIEPMTRTKE 182 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ +I + K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L ++SF Sbjct: 183 LAEVIAAAMPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSIISF 241 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305 HSLEDR+VK+F +S + + A +++ K ++P +E+VA N R Sbjct: 242 HSLEDRIVKRFMREQSRGPQVPAGIPMTEAQIKKLGGRELRALGK--MMPGEEEVAENPR 299 Query: 306 SRSAKLRAGMRT 317 +RS+ LR RT Sbjct: 300 ARSSVLRIAERT 311 >gi|170768458|ref|ZP_02902911.1| S-adenosyl-methyltransferase MraW [Escherichia albertii TW07627] gi|170122562|gb|EDS91493.1| S-adenosyl-methyltransferase MraW [Escherichia albertii TW07627] Length = 313 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 119/312 (38%), Positives = 179/312 (57%), Gaps = 19/312 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ + Sbjct: 6 KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLSEEGRLLAIDRDPQAIAVAK 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +FS+ FS L +YV ++ +DG++ DLGVSS Q+D +RGFSF + G Sbjct: 66 TI---DDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDG 122 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + G SA++ + A D+ +L GEE+ A RIA AIV+R + P T++ Sbjct: 123 PLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKE 182 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L V+SF Sbjct: 183 LAEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSVISF 241 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305 HSLEDR+VK+F S + + +++ K ++P +E+VA N R Sbjct: 242 HSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGK--LMPGEEEVAENPR 299 Query: 306 SRSAKLRAGMRT 317 +RS+ LR RT Sbjct: 300 ARSSVLRIAERT 311 >gi|209746624|gb|ACI71619.1| putative apolipoprotein [Escherichia coli] gi|320647484|gb|EFX16279.1| 16S rRNA m(4)C1402 methyltranserfase [Escherichia coli O157:H- str. 493-89] gi|320652818|gb|EFX21056.1| 16S rRNA m(4)C1402 methyltranserfase [Escherichia coli O157:H- str. H 2687] Length = 313 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 118/312 (37%), Positives = 179/312 (57%), Gaps = 19/312 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ + Sbjct: 6 KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +FS+ FS L +YV ++ +DG++ DLGVSS Q+D +RGFSF + G Sbjct: 66 TI---DDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDG 122 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + G SA++ + A D+ +L GEE+ A RIA AIV+R + P T++ Sbjct: 123 PLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNRKQPMTRTKE 182 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L ++SF Sbjct: 183 LAEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISF 241 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305 HSLEDR+VK+F S + + +++ K ++P +E+VA N R Sbjct: 242 HSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGK--LMPGEEEVAENPR 299 Query: 306 SRSAKLRAGMRT 317 +RS+ LR RT Sbjct: 300 ARSSVLRIAERT 311 >gi|239996439|ref|ZP_04716963.1| S-adenosyl-methyltransferase MraW [Alteromonas macleodii ATCC 27126] Length = 313 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 125/314 (39%), Positives = 181/314 (57%), Gaps = 15/314 (4%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFA 70 + H+ VLL++ I L P + +DATFG GG+S +IA DRDP A Sbjct: 3 QPSEFKHISVLLDECIEALAIKPNGIYIDATFGRGGHSAHILDALGEHGRLIAFDRDPQA 62 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFS 126 + E D ++FS+ + F + + + G +DGV+ DLGVSS Q+D +RGFS Sbjct: 63 IKAA-ERFAD-DKRFSIIHSPFGDMAEEIEALGLTGKIDGVLMDLGVSSPQLDDAERGFS 120 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 F + GPLDMRM S G SA+D + A +D+T+++ GEEK RIAHAIV R+ P Sbjct: 121 FLRDGPLDMRMDTSRGQSAADWLANAEEQDITQVIKEFGEEKFGKRIAHAIVNTRKETPI 180 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 T L+ +I + V K+ HPATR+FQ +RI++N E+E+L GL++A + L G L Sbjct: 181 TRTAQLAKIIDEAVPV-KDKFKHPATRAFQGIRIYINAELEQLRVGLKAATQVLAKEGRL 239 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK---KVVVPTQEDVAF 302 V+SFHSLEDRLVK+F +S K +V H +P + K K + P+++++A Sbjct: 240 AVISFHSLEDRLVKRFIKDQS-KGKSVPHNLPITQAEIDADKVLKALGKAIKPSEQEIAN 298 Query: 303 NRRSRSAKLRAGMR 316 N RSRS+ LR + Sbjct: 299 NVRSRSSVLRVAEK 312 >gi|15799766|ref|NP_285778.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 EDL933] gi|15829340|ref|NP_308113.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. Sakai] gi|16128075|ref|NP_414624.1| 16S rRNA m(4)C1402 methyltranserfase, SAM-dependent [Escherichia coli str. K-12 substr. MG1655] gi|82542686|ref|YP_406633.1| S-adenosyl-methyltransferase MraW [Shigella boydii Sb227] gi|89106965|ref|AP_000745.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Escherichia coli str. K-12 substr. W3110] gi|91209146|ref|YP_539132.1| S-adenosyl-methyltransferase MraW [Escherichia coli UTI89] gi|110640295|ref|YP_668023.1| S-adenosyl-methyltransferase MraW [Escherichia coli 536] gi|157154775|ref|YP_001461252.1| S-adenosyl-methyltransferase MraW [Escherichia coli E24377A] gi|157159553|ref|YP_001456871.1| S-adenosyl-methyltransferase MraW [Escherichia coli HS] gi|168751408|ref|ZP_02776430.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4113] gi|168755690|ref|ZP_02780697.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4401] gi|168764039|ref|ZP_02789046.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4501] gi|168771306|ref|ZP_02796313.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4486] gi|168776926|ref|ZP_02801933.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4196] gi|168781967|ref|ZP_02806974.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4076] gi|168789609|ref|ZP_02814616.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC869] gi|168801509|ref|ZP_02826516.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC508] gi|170021562|ref|YP_001726516.1| S-adenosyl-methyltransferase MraW [Escherichia coli ATCC 8739] gi|170079721|ref|YP_001729041.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Escherichia coli str. K-12 substr. DH10B] gi|170679711|ref|YP_001742204.1| S-adenosyl-methyltransferase MraW [Escherichia coli SMS-3-5] gi|187731396|ref|YP_001878892.1| S-adenosyl-methyltransferase MraW [Shigella boydii CDC 3083-94] gi|188494231|ref|ZP_03001501.1| S-adenosyl-methyltransferase MraW [Escherichia coli 53638] gi|191167757|ref|ZP_03029564.1| S-adenosyl-methyltransferase MraW [Escherichia coli B7A] gi|191174644|ref|ZP_03036126.1| S-adenosyl-methyltransferase MraW [Escherichia coli F11] gi|193065897|ref|ZP_03046958.1| S-adenosyl-methyltransferase MraW [Escherichia coli E22] gi|193070829|ref|ZP_03051762.1| S-adenosyl-methyltransferase MraW [Escherichia coli E110019] gi|194429383|ref|ZP_03061908.1| S-adenosyl-methyltransferase MraW [Escherichia coli B171] gi|194439418|ref|ZP_03071495.1| S-adenosyl-methyltransferase MraW [Escherichia coli 101-1] gi|195939298|ref|ZP_03084680.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4024] gi|208807673|ref|ZP_03250010.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4206] gi|208812612|ref|ZP_03253941.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4045] gi|208821818|ref|ZP_03262138.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4042] gi|209400403|ref|YP_002268690.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4115] gi|209917275|ref|YP_002291359.1| S-adenosyl-methyltransferase MraW [Escherichia coli SE11] gi|217324681|ref|ZP_03440765.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. TW14588] gi|218547539|ref|YP_002381330.1| S-adenosyl-methyltransferase MraW [Escherichia fergusonii ATCC 35469] gi|218552665|ref|YP_002385578.1| S-adenosyl-methyltransferase MraW [Escherichia coli IAI1] gi|218557022|ref|YP_002389935.1| S-adenosyl-methyltransferase MraW [Escherichia coli S88] gi|218693551|ref|YP_002401218.1| S-adenosyl-methyltransferase MraW [Escherichia coli 55989] gi|218703342|ref|YP_002410861.1| S-adenosyl-methyltransferase MraW [Escherichia coli UMN026] gi|237704231|ref|ZP_04534712.1| S-adenosyl-methyltransferase MraW [Escherichia sp. 3_2_53FAA] gi|238899483|ref|YP_002925279.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Escherichia coli BW2952] gi|253774888|ref|YP_003037719.1| S-adenosyl-methyltransferase MraW [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254037497|ref|ZP_04871574.1| S-adenosyl-methyltransferase MraW [Escherichia sp. 1_1_43] gi|254160204|ref|YP_003043312.1| S-adenosyl-methyltransferase MraW [Escherichia coli B str. REL606] gi|254791219|ref|YP_003076056.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. TW14359] gi|256020080|ref|ZP_05433945.1| S-adenosyl-methyltransferase MraW [Shigella sp. D9] gi|256025396|ref|ZP_05439261.1| S-adenosyl-methyltransferase MraW [Escherichia sp. 4_1_40B] gi|260842318|ref|YP_003220096.1| S-adenosyl-dependent methyltransferase [Escherichia coli O103:H2 str. 12009] gi|260853295|ref|YP_003227186.1| S-adenosyl-dependent methyltransferase [Escherichia coli O26:H11 str. 11368] gi|260866235|ref|YP_003232637.1| S-adenosyl-dependent methyltransferase [Escherichia coli O111:H- str. 11128] gi|261226839|ref|ZP_05941120.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. FRIK2000] gi|261255243|ref|ZP_05947776.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. FRIK966] gi|291280907|ref|YP_003497725.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Escherichia coli O55:H7 str. CB9615] gi|293403154|ref|ZP_06647251.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Escherichia coli FVEC1412] gi|293408175|ref|ZP_06652015.1| S-adenosyl-methyltransferase MraW [Escherichia coli B354] gi|293417958|ref|ZP_06660580.1| S-adenosyl-methyltransferase MraW [Escherichia coli B185] gi|293476742|ref|ZP_06665150.1| S-adenosyl-methyltransferase MraW [Escherichia coli B088] gi|297516902|ref|ZP_06935288.1| S-adenosyl-methyltransferase MraW [Escherichia coli OP50] gi|298378684|ref|ZP_06988568.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Escherichia coli FVEC1302] gi|300816120|ref|ZP_07096343.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 107-1] gi|300821913|ref|ZP_07102057.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 119-7] gi|300900887|ref|ZP_07119024.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 198-1] gi|300905491|ref|ZP_07123255.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 84-1] gi|300919637|ref|ZP_07136128.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 115-1] gi|300923135|ref|ZP_07139195.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 182-1] gi|300931791|ref|ZP_07147091.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 187-1] gi|300938477|ref|ZP_07153217.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 21-1] gi|300949900|ref|ZP_07163863.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 116-1] gi|300955948|ref|ZP_07168281.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 175-1] gi|300984504|ref|ZP_07176996.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 200-1] gi|301028563|ref|ZP_07191794.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 196-1] gi|301303818|ref|ZP_07209938.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 124-1] gi|301330140|ref|ZP_07222807.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 78-1] gi|301646394|ref|ZP_07246276.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 146-1] gi|306815320|ref|ZP_07449469.1| S-adenosyl-methyltransferase MraW [Escherichia coli NC101] gi|307136683|ref|ZP_07496039.1| S-adenosyl-methyltransferase MraW [Escherichia coli H736] gi|307311467|ref|ZP_07591109.1| S-adenosyl-methyltransferase MraW [Escherichia coli W] gi|309796072|ref|ZP_07690484.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 145-7] gi|312970176|ref|ZP_07784358.1| S-adenosyl-methyltransferase MraW [Escherichia coli 1827-70] gi|331661128|ref|ZP_08362060.1| S-adenosyl-methyltransferase MraW [Escherichia coli TA206] gi|331661456|ref|ZP_08362380.1| S-adenosyl-methyltransferase MraW [Escherichia coli TA143] gi|331666319|ref|ZP_08367200.1| S-adenosyl-methyltransferase MraW [Escherichia coli TA271] gi|331681467|ref|ZP_08382104.1| S-adenosyl-methyltransferase MraW [Escherichia coli H299] gi|332281230|ref|ZP_08393643.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Shigella sp. D9] gi|42559423|sp|P60391|RSMH_ECO57 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|42560200|sp|P60390|RSMH_ECOLI RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|88909217|sp|Q326F3|RSMH_SHIBS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|122425027|sp|Q1RGB3|RSMH_ECOUT RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|122958600|sp|Q0TLQ7|RSMH_ECOL5 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262826583|sp|B2U287|RSMH_SHIB3 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446391|sp|A7ZHH3|RSMH_ECO24 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446421|sp|B7LFV2|RSMH_ECO55 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446425|sp|B5YZB8|RSMH_ECO5E RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446445|sp|B7M125|RSMH_ECO8A RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446449|sp|C5W331|RSMH_ECOBB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446457|sp|C6UM45|RSMH_ECOBR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446461|sp|C4ZQ04|RSMH_ECOBW RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446465|sp|B1XC59|RSMH_ECODH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446468|sp|A7ZW34|RSMH_ECOHS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446964|sp|B1IR96|RSMH_ECOLC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446972|sp|B7N7V5|RSMH_ECOLU RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446978|sp|B6HZ59|RSMH_ECOSE RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446983|sp|B1LG19|RSMH_ECOSM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263447462|sp|B7MAK5|RSMH_ECO45 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263447500|sp|B7LWH0|RSMH_ESCF3 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263447897|sp|A1A7C7|RSMH_ECOK1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|12512785|gb|AAG54386.1|AE005185_3 putative apolipoprotein [Escherichia coli O157:H7 str. EDL933] gi|40850|emb|CAA38859.1| unnamed protein product [Escherichia coli] gi|42318|emb|CAA36283.1| unnamed protein product [Escherichia coli str. K-12 substr. W3110] gi|1786270|gb|AAC73193.1| 16S rRNA m(4)C1402 methyltranserfase, SAM-dependent [Escherichia coli str. K-12 substr. MG1655] gi|13359542|dbj|BAB33509.1| putative apolipoprotein [Escherichia coli O157:H7 str. Sakai] gi|21321963|dbj|BAB96650.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Escherichia coli str. K12 substr. W3110] gi|81244097|gb|ABB64805.1| putative apolipoprotein [Shigella boydii Sb227] gi|91070720|gb|ABE05601.1| S-adenosyl-dependent methyltransferase MraW [Escherichia coli UTI89] gi|110341887|gb|ABG68124.1| S-adenosyl-methyltransferase MraW [Escherichia coli 536] gi|157065233|gb|ABV04488.1| S-adenosyl-methyltransferase MraW [Escherichia coli HS] gi|157076805|gb|ABV16513.1| S-adenosyl-methyltransferase MraW [Escherichia coli E24377A] gi|169756490|gb|ACA79189.1| S-adenosyl-methyltransferase MraW [Escherichia coli ATCC 8739] gi|169887556|gb|ACB01263.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Escherichia coli str. K-12 substr. DH10B] gi|170517429|gb|ACB15607.1| S-adenosyl-methyltransferase MraW [Escherichia coli SMS-3-5] gi|187428388|gb|ACD07662.1| S-adenosyl-methyltransferase MraW [Shigella boydii CDC 3083-94] gi|187767771|gb|EDU31615.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4196] gi|188014531|gb|EDU52653.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4113] gi|188489430|gb|EDU64533.1| S-adenosyl-methyltransferase MraW [Escherichia coli 53638] gi|189000502|gb|EDU69488.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4076] gi|189356993|gb|EDU75412.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4401] gi|189359899|gb|EDU78318.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4486] gi|189365898|gb|EDU84314.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4501] gi|189370778|gb|EDU89194.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC869] gi|189376342|gb|EDU94758.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC508] gi|190902183|gb|EDV61925.1| S-adenosyl-methyltransferase MraW [Escherichia coli B7A] gi|190905079|gb|EDV64736.1| S-adenosyl-methyltransferase MraW [Escherichia coli F11] gi|192926484|gb|EDV81117.1| S-adenosyl-methyltransferase MraW [Escherichia coli E22] gi|192955859|gb|EDV86329.1| S-adenosyl-methyltransferase MraW [Escherichia coli E110019] gi|194412603|gb|EDX28900.1| S-adenosyl-methyltransferase MraW [Escherichia coli B171] gi|194421677|gb|EDX37687.1| S-adenosyl-methyltransferase MraW [Escherichia coli 101-1] gi|208727474|gb|EDZ77075.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4206] gi|208733889|gb|EDZ82576.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4045] gi|208741941|gb|EDZ89623.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4042] gi|209161803|gb|ACI39236.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4115] gi|209746626|gb|ACI71620.1| putative apolipoprotein [Escherichia coli] gi|209746628|gb|ACI71621.1| putative apolipoprotein [Escherichia coli] gi|209746630|gb|ACI71622.1| putative apolipoprotein [Escherichia coli] gi|209746632|gb|ACI71623.1| putative apolipoprotein [Escherichia coli] gi|209910534|dbj|BAG75608.1| S-adenosyl-methyltransferase [Escherichia coli SE11] gi|217320902|gb|EEC29326.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. TW14588] gi|218350283|emb|CAU95966.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Escherichia coli 55989] gi|218355080|emb|CAQ87687.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Escherichia fergusonii ATCC 35469] gi|218359433|emb|CAQ96971.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Escherichia coli IAI1] gi|218363791|emb|CAR01451.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Escherichia coli S88] gi|218430439|emb|CAR11305.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Escherichia coli UMN026] gi|226840603|gb|EEH72605.1| S-adenosyl-methyltransferase MraW [Escherichia sp. 1_1_43] gi|226902143|gb|EEH88402.1| S-adenosyl-methyltransferase MraW [Escherichia sp. 3_2_53FAA] gi|238863507|gb|ACR65505.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Escherichia coli BW2952] gi|242375918|emb|CAQ30599.1| 16S rRNA m[4]C1402 methyltransferase [Escherichia coli BL21(DE3)] gi|253325932|gb|ACT30534.1| S-adenosyl-methyltransferase MraW [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972105|gb|ACT37776.1| S-adenosyl-methyltransferase [Escherichia coli B str. REL606] gi|253976314|gb|ACT41984.1| S-adenosyl-methyltransferase [Escherichia coli BL21(DE3)] gi|254590619|gb|ACT69980.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Escherichia coli O157:H7 str. TW14359] gi|257751944|dbj|BAI23446.1| S-adenosyl-dependent methyltransferase [Escherichia coli O26:H11 str. 11368] gi|257757465|dbj|BAI28962.1| S-adenosyl-dependent methyltransferase [Escherichia coli O103:H2 str. 12009] gi|257762591|dbj|BAI34086.1| S-adenosyl-dependent methyltransferase [Escherichia coli O111:H- str. 11128] gi|260450711|gb|ACX41133.1| S-adenosyl-methyltransferase MraW [Escherichia coli DH1] gi|281177302|dbj|BAI53632.1| S-adenosyl-methyltransferase [Escherichia coli SE15] gi|290760780|gb|ADD54741.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Escherichia coli O55:H7 str. CB9615] gi|291321195|gb|EFE60637.1| S-adenosyl-methyltransferase MraW [Escherichia coli B088] gi|291430069|gb|EFF03083.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Escherichia coli FVEC1412] gi|291430676|gb|EFF03674.1| S-adenosyl-methyltransferase MraW [Escherichia coli B185] gi|291472426|gb|EFF14908.1| S-adenosyl-methyltransferase MraW [Escherichia coli B354] gi|294492092|gb|ADE90848.1| S-adenosyl-methyltransferase MraW [Escherichia coli IHE3034] gi|298281018|gb|EFI22519.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Escherichia coli FVEC1302] gi|299878407|gb|EFI86618.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 196-1] gi|300306673|gb|EFJ61193.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 200-1] gi|300317168|gb|EFJ66952.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 175-1] gi|300355651|gb|EFJ71521.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 198-1] gi|300402641|gb|EFJ86179.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 84-1] gi|300413277|gb|EFJ96587.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 115-1] gi|300420590|gb|EFK03901.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 182-1] gi|300450732|gb|EFK14352.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 116-1] gi|300456546|gb|EFK20039.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 21-1] gi|300460451|gb|EFK23944.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 187-1] gi|300525513|gb|EFK46582.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 119-7] gi|300531327|gb|EFK52389.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 107-1] gi|300840945|gb|EFK68705.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 124-1] gi|300843845|gb|EFK71605.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 78-1] gi|301075364|gb|EFK90170.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 146-1] gi|305850982|gb|EFM51437.1| S-adenosyl-methyltransferase MraW [Escherichia coli NC101] gi|306908446|gb|EFN38944.1| S-adenosyl-methyltransferase MraW [Escherichia coli W] gi|307629656|gb|ADN73960.1| S-adenosyl-methyltransferase MraW [Escherichia coli UM146] gi|308120314|gb|EFO57576.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 145-7] gi|309700293|emb|CBI99581.1| S-adenosyl-L-methionine-dependent methyltransferase [Escherichia coli ETEC H10407] gi|310337674|gb|EFQ02785.1| S-adenosyl-methyltransferase MraW [Escherichia coli 1827-70] gi|315059305|gb|ADT73632.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Escherichia coli W] gi|315134776|dbj|BAJ41935.1| S-adenosyl-methyltransferase MraW [Escherichia coli DH1] gi|315253156|gb|EFU33124.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 85-1] gi|315285172|gb|EFU44617.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 110-3] gi|315300017|gb|EFU59255.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 16-3] gi|315616139|gb|EFU96758.1| S-adenosyl-methyltransferase MraW [Escherichia coli 3431] gi|320172827|gb|EFW48059.1| rRNA small subunit methyltransferase H [Shigella dysenteriae CDC 74-1112] gi|320183631|gb|EFW58474.1| rRNA small subunit methyltransferase H [Shigella flexneri CDC 796-83] gi|320190395|gb|EFW65045.1| rRNA small subunit methyltransferase H [Escherichia coli O157:H7 str. EC1212] gi|320197467|gb|EFW72081.1| rRNA small subunit methyltransferase H [Escherichia coli WV_060327] gi|320200399|gb|EFW74985.1| rRNA small subunit methyltransferase H [Escherichia coli EC4100B] gi|320642121|gb|EFX11472.1| 16S rRNA m(4)C1402 methyltranserfase [Escherichia coli O157:H7 str. G5101] gi|320658207|gb|EFX25936.1| 16S rRNA m(4)C1402 methyltranserfase [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320663516|gb|EFX30800.1| 16S rRNA m(4)C1402 methyltranserfase [Escherichia coli O55:H7 str. USDA 5905] gi|320668828|gb|EFX35623.1| 16S rRNA m(4)C1402 methyltranserfase [Escherichia coli O157:H7 str. LSU-61] gi|323157851|gb|EFZ43954.1| S-adenosyl-methyltransferase MraW [Escherichia coli EPECa14] gi|323160120|gb|EFZ46081.1| S-adenosyl-methyltransferase MraW [Escherichia coli E128010] gi|323176390|gb|EFZ61982.1| S-adenosyl-methyltransferase MraW [Escherichia coli 1180] gi|323181779|gb|EFZ67192.1| S-adenosyl-methyltransferase MraW [Escherichia coli 1357] gi|323190236|gb|EFZ75512.1| S-adenosyl-methyltransferase MraW [Escherichia coli RN587/1] gi|323380137|gb|ADX52405.1| S-adenosyl-methyltransferase MraW [Escherichia coli KO11] gi|323935134|gb|EGB31501.1| S-adenosyl-methyltransferase MraW [Escherichia coli E1520] gi|323939878|gb|EGB36078.1| S-adenosyl-methyltransferase MraW [Escherichia coli E482] gi|323945711|gb|EGB41759.1| S-adenosyl-methyltransferase MraW [Escherichia coli H120] gi|323950922|gb|EGB46799.1| S-adenosyl-methyltransferase MraW [Escherichia coli H252] gi|323955280|gb|EGB51053.1| S-adenosyl-methyltransferase MraW [Escherichia coli H263] gi|323960028|gb|EGB55674.1| S-adenosyl-methyltransferase MraW [Escherichia coli H489] gi|323964822|gb|EGB60289.1| S-adenosyl-methyltransferase MraW [Escherichia coli M863] gi|323970754|gb|EGB66008.1| S-adenosyl-methyltransferase MraW [Escherichia coli TA007] gi|323975754|gb|EGB70850.1| S-adenosyl-methyltransferase MraW [Escherichia coli TW10509] gi|324012284|gb|EGB81503.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 60-1] gi|324017757|gb|EGB86976.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 117-3] gi|324112505|gb|EGC06482.1| S-adenosyl-methyltransferase MraW [Escherichia fergusonii B253] gi|324118432|gb|EGC12326.1| S-adenosyl-methyltransferase MraW [Escherichia coli E1167] gi|325496018|gb|EGC93877.1| S-adenosyl-methyltransferase MraW [Escherichia fergusonii ECD227] gi|326345198|gb|EGD68941.1| rRNA small subunit methyltransferase H [Escherichia coli O157:H7 str. 1125] gi|326346948|gb|EGD70682.1| rRNA small subunit methyltransferase H [Escherichia coli O157:H7 str. 1044] gi|327255060|gb|EGE66663.1| S-adenosyl-methyltransferase MraW [Escherichia coli STEC_7v] gi|330909929|gb|EGH38439.1| rRNA small subunit methyltransferase H [Escherichia coli AA86] gi|331052170|gb|EGI24209.1| S-adenosyl-methyltransferase MraW [Escherichia coli TA206] gi|331061371|gb|EGI33334.1| S-adenosyl-methyltransferase MraW [Escherichia coli TA143] gi|331066530|gb|EGI38407.1| S-adenosyl-methyltransferase MraW [Escherichia coli TA271] gi|331081688|gb|EGI52849.1| S-adenosyl-methyltransferase MraW [Escherichia coli H299] gi|332095373|gb|EGJ00396.1| S-adenosyl-methyltransferase MraW [Shigella boydii 5216-82] gi|332098926|gb|EGJ03877.1| S-adenosyl-methyltransferase MraW [Shigella boydii 3594-74] gi|332103582|gb|EGJ06928.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Shigella sp. D9] gi|332341414|gb|AEE54748.1| S-adenosyl-methyltransferase MraW [Escherichia coli UMNK88] gi|333010578|gb|EGK30011.1| S-adenosyl-methyltransferase MraW [Shigella flexneri VA-6] gi|333011470|gb|EGK30884.1| S-adenosyl-methyltransferase MraW [Shigella flexneri K-272] gi|333021712|gb|EGK40961.1| S-adenosyl-methyltransferase MraW [Shigella flexneri K-227] Length = 313 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 118/312 (37%), Positives = 179/312 (57%), Gaps = 19/312 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ + Sbjct: 6 KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +FS+ FS L +YV ++ +DG++ DLGVSS Q+D +RGFSF + G Sbjct: 66 TI---DDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDG 122 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + G SA++ + A D+ +L GEE+ A RIA AIV+R + P T++ Sbjct: 123 PLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKE 182 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L ++SF Sbjct: 183 LAEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISF 241 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305 HSLEDR+VK+F S + + +++ K ++P +E+VA N R Sbjct: 242 HSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGK--LMPGEEEVAENPR 299 Query: 306 SRSAKLRAGMRT 317 +RS+ LR RT Sbjct: 300 ARSSVLRIAERT 311 >gi|160944903|ref|ZP_02092130.1| hypothetical protein FAEPRAM212_02419 [Faecalibacterium prausnitzii M21/2] gi|158444087|gb|EDP21091.1| hypothetical protein FAEPRAM212_02419 [Faecalibacterium prausnitzii M21/2] Length = 321 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 112/315 (35%), Positives = 166/315 (52%), Gaps = 12/315 (3%) Query: 12 AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-----KMGSNVIALDR 66 +H+PVLL + + L P LD T G G+SR G +I+LD+ Sbjct: 8 PFDPASFEHIPVLLNECLTGLAIDPAGTYLDGTAGGAGHSRQIALRLDAAKGGRLISLDQ 67 Query: 67 DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDR 123 DP AV + + ++ Q F + G+ +G + DLGVSS Q+D R Sbjct: 68 DPDAVQTARSRLAGLPA--TVVQINFRYAGQALEQLGIEKINGALLDLGVSSHQLDDAAR 125 Query: 124 GFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 GFS++ PLDMRMS G +A+D+VN + ++L RIL GEE A +IA IV+ R++A Sbjct: 126 GFSYRADAPLDMRMSQQGETAADLVNTESREELARILRDYGEEPYAWQIAGKIVEARETA 185 Query: 184 PFQTTQDLSSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 P TT L+ ++ + ++ + +P+ R+FQALRI VN+E++ L +GL + L G Sbjct: 186 PILTTLQLADIVASAMPPAERRKNKNPSRRTFQALRIAVNHELDALEEGLDTIFDHLAPG 245 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVA 301 G L V++FHSLEDRLVK F S + A + IT+K + +++ Sbjct: 246 GRLCVITFHSLEDRLVKNKFRRWSTACTCPPEFPVCVCGGKAKAKLITRKPIEADTQELE 305 Query: 302 FNRRSRSAKLRAGMR 316 NRRSRSA LR + Sbjct: 306 ENRRSRSAHLRVLEK 320 >gi|298293108|ref|YP_003695047.1| S-adenosyl-methyltransferase MraW [Starkeya novella DSM 506] gi|296929619|gb|ADH90428.1| S-adenosyl-methyltransferase MraW [Starkeya novella DSM 506] Length = 345 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 143/323 (44%), Positives = 203/323 (62%), Gaps = 6/323 (1%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQE 76 H+PVLL +V+ L P G + +D TFGAGGY+ + G++VIA+DRDP A+ GQ Sbjct: 17 ARHLPVLLAEVVEHLAPKDGGLYIDGTFGAGGYTSAILNAAGTSVIAIDRDPTAIEGGQG 76 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + +L FS L + +G VDGVV D+GVSSMQID G+RGFSF++ GPL Sbjct: 77 LVAASGGRLTLVHERFSALDEVAAAQGIDAVDGVVLDIGVSSMQIDEGERGFSFRRDGPL 136 Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 DMRMS G SA+D+V + + DL ++ GEE+ + +A AIV R+ AP + T L+ Sbjct: 137 DMRMSSEGPSAADLVAKLSETDLANLIFRFGEERHSRAVARAIVAARKEAPIERTLQLAD 196 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 ++ K V+ +K + HPATR+FQALRI VN+E+ ELA+ L +AE+ LK GG L+VV+FHSL Sbjct: 197 IVAKVVW-AKPHEPHPATRTFQALRIAVNDELGELARALSAAERVLKPGGRLVVVTFHSL 255 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 EDR+VK F A+R+ RHM + P F+ + + V P +E++A N R+RS++LRA Sbjct: 256 EDRIVKTFLANRAKAAAGSRHMPALQSAPPSFKLVARGAVEPGEEELARNPRARSSRLRA 315 Query: 314 GMRTVERSIEDDSFVH-LPRLPT 335 RT + LP +P Sbjct: 316 AERTEAPAHPAGDLSSLLPPVPD 338 >gi|284919862|emb|CBG32917.1| S-adenosyl-L-methionine-dependent methyltransferase [Escherichia coli 042] Length = 312 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 118/312 (37%), Positives = 179/312 (57%), Gaps = 19/312 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ + Sbjct: 5 KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK 64 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +FS+ FS L +YV ++ +DG++ DLGVSS Q+D +RGFSF + G Sbjct: 65 TI---DDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDG 121 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + G SA++ + A D+ +L GEE+ A RIA AIV+R + P T++ Sbjct: 122 PLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKE 181 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L ++SF Sbjct: 182 LAEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISF 240 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305 HSLEDR+VK+F S + + +++ K ++P +E+VA N R Sbjct: 241 HSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGK--LMPGEEEVAENPR 298 Query: 306 SRSAKLRAGMRT 317 +RS+ LR RT Sbjct: 299 ARSSVLRIAERT 310 >gi|218698505|ref|YP_002406134.1| S-adenosyl-methyltransferase MraW [Escherichia coli IAI39] gi|263446431|sp|B7NHI8|RSMH_ECO7I RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|218368491|emb|CAR16226.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Escherichia coli IAI39] Length = 313 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 119/312 (38%), Positives = 179/312 (57%), Gaps = 19/312 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ + Sbjct: 6 KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQFGEEGRLLAIDRDPQAIAVAK 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +FS+ FS L DYV ++ +DG++ DLGVSS Q+D +RGFSF + G Sbjct: 66 TI---DDPRFSIIHGPFSALGDYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDG 122 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + G SA++ + A D+ +L GEE+ A RIA AIV+R + P T++ Sbjct: 123 PLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKE 182 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L ++SF Sbjct: 183 LAEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISF 241 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305 HSLEDR+VK+F S + + +++ K ++P +E+VA N R Sbjct: 242 HSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGK--LMPGEEEVAENPR 299 Query: 306 SRSAKLRAGMRT 317 +RS+ LR RT Sbjct: 300 ARSSVLRIAERT 311 >gi|191638270|ref|YP_001987436.1| S-adenosyl-methyltransferase MraW [Lactobacillus casei BL23] gi|239631645|ref|ZP_04674676.1| SAM-dependent methyltransferase for cell envelope biogenesis [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301066319|ref|YP_003788342.1| SAM-dependent methyltransferase for cell envelope biogenesis [Lactobacillus casei str. Zhang] gi|263456244|sp|B3WDX7|RSMH_LACCB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|190712572|emb|CAQ66578.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Lactobacillus casei BL23] gi|239526110|gb|EEQ65111.1| SAM-dependent methyltransferase for cell envelope biogenesis [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300438726|gb|ADK18492.1| SAM-dependent methyltransferase for cell envelope biogenesis [Lactobacillus casei str. Zhang] gi|327382302|gb|AEA53778.1| Ribosomal RNA small subunit methyltransferase H [Lactobacillus casei LC2W] gi|327385497|gb|AEA56971.1| Ribosomal RNA small subunit methyltransferase H [Lactobacillus casei BD-II] Length = 313 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 112/311 (36%), Positives = 162/311 (52%), Gaps = 10/311 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73 T H VLL++ A L P + +DAT G GG++R +IA D+D A++ Sbjct: 2 TEFKHETVLLKEATAALAVKPAGIYVDATLGRGGHTRQILNQLTTGRLIAFDQDEAAIAT 61 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +Q +L F L D + G VDG+++DLGVSS Q D RGFS++ Sbjct: 62 VTADFGTLPKQLTLVHRNFRDLTDALTTLGITEVDGILYDLGVSSPQFDDSKRGFSYRFD 121 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM + A +VN+ DL RI GEE + +IA I + R P TT Sbjct: 122 APLDMRMDQRQTLDAKTIVNEWPYADLVRIFSRYGEEHFSKQIARRIEQARTVQPITTTF 181 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L LI+ + + HPA + FQA+RI VN+E+ L L A K + GG + V+ Sbjct: 182 QLVELIKAGIPAKARRTGGHPAKKVFQAIRIAVNDELSALESSLEQALKLINVGGRISVI 241 Query: 249 SFHSLEDRLVKKFFASRS--GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 +F SLEDRLVK F S V +IP++A P ++ + +K ++P++E++A N R+ Sbjct: 242 TFQSLEDRLVKTMFKEVSSVQDVPRGLPVIPASAQPN-YRLVNRKPILPSEEELAVNHRA 300 Query: 307 RSAKLRAGMRT 317 SAKLR + Sbjct: 301 HSAKLRVIEKI 311 >gi|295104209|emb|CBL01753.1| S-adenosyl-methyltransferase MraW [Faecalibacterium prausnitzii SL3/3] Length = 321 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 112/315 (35%), Positives = 166/315 (52%), Gaps = 12/315 (3%) Query: 12 AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-----KMGSNVIALDR 66 +H+PVLL + + L P LD T G G+SR G +I+LD+ Sbjct: 8 PFDPASFEHIPVLLNECLTGLAIDPAGTYLDGTAGGAGHSRQIALRLDAAKGGRLISLDQ 67 Query: 67 DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDR 123 DP AV + + ++ Q F + G+ +G + DLGVSS Q+D R Sbjct: 68 DPDAVQTARSRLAGLPA--TVVQINFRYAGQALEQLGIEKINGALLDLGVSSHQLDDAAR 125 Query: 124 GFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 GFS++ PLDMRMS G +A+D+VN + ++L RIL GEE A +IA IV+ R++A Sbjct: 126 GFSYRADAPLDMRMSQQGETAADLVNTESREELARILRDYGEEPYAWQIAGKIVETRETA 185 Query: 184 PFQTTQDLSSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 P TT L+ ++ + ++ + +P+ R+FQALRI VN+E++ L +GL + L G Sbjct: 186 PILTTLQLADIVASAMPPAERRKNKNPSRRTFQALRIAVNHELDALEEGLDTIFDHLAPG 245 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVA 301 G L V++FHSLEDRLVK F S + A + IT+K + +++ Sbjct: 246 GRLCVITFHSLEDRLVKNKFRRWSTACTCPPEFPVCVCGGKAKAKLITRKPIEADTQELE 305 Query: 302 FNRRSRSAKLRAGMR 316 NRRSRSA LR + Sbjct: 306 ENRRSRSAHLRVLEK 320 >gi|323466809|gb|ADX70496.1| Ribosomal RNA small subunit methyltransferase H [Lactobacillus helveticus H10] Length = 349 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 109/337 (32%), Positives = 173/337 (51%), Gaps = 21/337 (6%) Query: 1 MESKSCKTMSS------AIHHTI--GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSR 52 ++ K KTM + +++ I H VLL + I L P G + +DATFG GG+++ Sbjct: 12 LKKKLTKTMMTLLKIWTTLNYKIMKFKHTSVLLHETIDNLKPKNGGLYVDATFGGGGHAK 71 Query: 53 SFCKM--GSNVIALDRDPFAVSCGQETMRDY-----KEQFSLFQATFSQLQDYVPD---- 101 ++ D+D +A+ + D + + L FS L+ + Sbjct: 72 YLLSKIETGTLVGFDQDEYAIKSAELNFADLLQPDSEPRLKLVHDNFSNLEQDLVKLGYS 131 Query: 102 KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGIS-ASDVVNQANVKDLTRIL 160 G+DG+ +DLGVSS Q D DRGFS++ + LDMRM S + A +VN + K+L IL Sbjct: 132 DGIDGIYYDLGVSSPQFDQADRGFSYRYNARLDMRMDQSQDTDAYQLVNTLSQKELADIL 191 Query: 161 GILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRI 219 G+EK + +IAH IV+RR+ P TT L +I++ + ++ HPA +SFQALR+ Sbjct: 192 YQYGDEKFSRQIAHRIVERRKDKPIVTTFQLVDIIKEAIPAYARRTGGHPAKKSFQALRV 251 Query: 220 FVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSN 279 VN+E++ L L A + L+ GG + V++F S ED++VKK F S + + Sbjct: 252 AVNHELDVLQASLEEAIRILRPGGRISVITFQSHEDKIVKKIFKKYSEVEVPRGMPFVPD 311 Query: 280 AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 + +K + + ++ N RS SAKLR + Sbjct: 312 DMKPTLRLENRKPITASTSELENNNRSHSAKLRVAEK 348 >gi|146276735|ref|YP_001166894.1| S-adenosyl-methyltransferase MraW [Rhodobacter sphaeroides ATCC 17025] gi|262825577|sp|A4WQC5|RSMH_RHOS5 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|145554976|gb|ABP69589.1| S-adenosyl-methyltransferase MraW [Rhodobacter sphaeroides ATCC 17025] Length = 331 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 148/331 (44%), Positives = 205/331 (61%), Gaps = 5/331 (1%) Query: 11 SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPF 69 +A H+PVLL ++A + P V LD TFGAGGY+R + G+ VI +DRDP Sbjct: 2 AAAETGRRPHIPVLLRPLLAAVAPVS-GVWLDGTFGAGGYARGLLEAGADRVIGVDRDPL 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 A+ Q+ Y ++ L TFSQL + + +DGVV DLGVSSMQ+D DRGFSFQK Sbjct: 61 ALEMAQDWAGAYGDRLRLVAGTFSQLDVHAGEP-LDGVVLDLGVSSMQLDQADRGFSFQK 119 Query: 130 SGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 GPLDMRMS G SA+D+VN+A+ + L IL GEE+ + RIA AIV+ R + P T Sbjct: 120 DGPLDMRMSQQGESAADLVNEASEETLADILYHYGEERASRRIARAIVEARAAGPITRTL 179 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ ++ + + K ++HPATRSFQA+RI VN E EL +GL +AE+ALK GG L VV+ Sbjct: 180 HLAEIVARCLPRPKPGQMHPATRSFQAIRIAVNAEFSELVEGLEAAERALKPGGRLAVVT 239 Query: 250 FHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK+F RS G+ R+ + A A F ++ + P + ++A N R+RS Sbjct: 240 FHSLEDRIVKRFLQLRSGGEGQGNRYAPETRAEAARFTLPLRRAISPDEAELADNPRARS 299 Query: 309 AKLRAGMRTVERSIE-DDSFVHLPRLPTLSQ 338 A+LR G+RT + D + +P +P + Sbjct: 300 ARLRVGVRTDAPAGPVDPQVLGMPLIPKKGR 330 >gi|238916664|ref|YP_002930181.1| S-adenosyl-methyltransferase [Eubacterium eligens ATCC 27750] gi|263447037|sp|C4Z530|RSMH_EUBE2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|238872024|gb|ACR71734.1| S-adenosyl-methyltransferase [Eubacterium eligens ATCC 27750] Length = 315 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 98/308 (31%), Positives = 166/308 (53%), Gaps = 9/308 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 H VLLE+ I LN P + +D T G G+S K G +I +D+D A++ Sbjct: 8 KHKSVLLEETIDNLNIKPDGIYVDGTLGGAGHSYQIAKRLTGGGRLIGIDQDADAIAAAT 67 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E +++++E+ ++ + + + + + G VDG++ D+GVSS Q+D RGF++ Sbjct: 68 ERLKEFEERVTIVRNNYCNMDKVLDELGIDKVDGILLDIGVSSYQLDTASRGFTYNVDTA 127 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM ++A D+VN + +L RI+ GE++ A IA IV R+ P +TT +L Sbjct: 128 LDMRMDQRQEMTAKDLVNTYSEMELFRIIRDYGEDRFAKNIAKHIVAARKEKPIETTFEL 187 Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 + +I+ ++ + HP+ R++QA+RI +N E++ L + L G L +++F Sbjct: 188 NEIIKASIPAKVRATGGHPSKRTYQAIRIELNRELDVLENSIDMMIDRLNPQGRLCIITF 247 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK F + + + + IT+K +VP E++ N+RS+S+ Sbjct: 248 HSLEDRIVKARFRNNENPCTCPPDFPVCVCGKKSKGKVITRKPIVPGDEELNENQRSKSS 307 Query: 310 KLRAGMRT 317 KLR R Sbjct: 308 KLRVFERI 315 >gi|24111527|ref|NP_706037.1| S-adenosyl-methyltransferase MraW [Shigella flexneri 2a str. 301] gi|30061649|ref|NP_835820.1| S-adenosyl-methyltransferase MraW [Shigella flexneri 2a str. 2457T] gi|42559469|sp|Q83SN7|RSMH_SHIFL RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|24050285|gb|AAN41744.1| putative apolipoprotein [Shigella flexneri 2a str. 301] gi|30039891|gb|AAP15625.1| putative apolipoprotein [Shigella flexneri 2a str. 2457T] gi|281599444|gb|ADA72428.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Shigella flexneri 2002017] gi|313646535|gb|EFS10996.1| S-adenosyl-methyltransferase MraW [Shigella flexneri 2a str. 2457T] gi|332762256|gb|EGJ92523.1| S-adenosyl-methyltransferase MraW [Shigella flexneri 2747-71] gi|332762643|gb|EGJ92908.1| S-adenosyl-methyltransferase MraW [Shigella flexneri 4343-70] gi|332764928|gb|EGJ95156.1| S-adenosyl-methyltransferase MraW [Shigella flexneri K-671] gi|333009116|gb|EGK28572.1| S-adenosyl-methyltransferase MraW [Shigella flexneri K-218] gi|333022474|gb|EGK41712.1| S-adenosyl-methyltransferase MraW [Shigella flexneri K-304] Length = 313 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 118/312 (37%), Positives = 178/312 (57%), Gaps = 19/312 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ + Sbjct: 6 KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +FS+ FS L +YV ++ +DG++ DLGVSS Q+D +RGFSF + G Sbjct: 66 TI---DDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDG 122 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + G SA++ + A D+ +L GEE A RIA AIV+R + P T++ Sbjct: 123 PLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEEHFAKRIARAIVERNREQPMTRTKE 182 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L ++SF Sbjct: 183 LAEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISF 241 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305 HSLEDR+VK+F S + + +++ K ++P +E+VA N R Sbjct: 242 HSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGK--LMPGEEEVAENPR 299 Query: 306 SRSAKLRAGMRT 317 +RS+ LR RT Sbjct: 300 ARSSVLRIAERT 311 >gi|323486709|ref|ZP_08092030.1| hypothetical protein HMPREF9474_03781 [Clostridium symbiosum WAL-14163] gi|323400090|gb|EGA92467.1| hypothetical protein HMPREF9474_03781 [Clostridium symbiosum WAL-14163] Length = 314 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 98/312 (31%), Positives = 173/312 (55%), Gaps = 10/312 (3%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSC 73 I H VLL++ I L+ P + +D T G GG++ C+ I +D+D A++ Sbjct: 2 IFGHKSVLLDETIESLDIKPDGIYVDGTLGGGGHASEVCRRLGDKGRFIGIDQDADAIAA 61 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 E ++++ ++ ++ ++ + + + + + G VDG+ DLGVSS Q+D +RGF++++ Sbjct: 62 ASERLKEFGDKVTIVRSNYENIDEVLKELGISQVDGIYLDLGVSSYQLDTAERGFTYRED 121 Query: 131 -GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM + ++A D+VN + +L I+ GE++ A IA IV+ RQ +TT Sbjct: 122 DAPLDMRMDQRNEMTAKDIVNTYSESELFHIIKNYGEDRFAKNIAKHIVRARQEKEIETT 181 Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L +I+ + + HPA R+FQA+RI +N E+E L + L GG L + Sbjct: 182 GELIEIIKAAIPAKVRATGGHPAKRTFQAIRIELNKELEVLENSIDKMTDLLAPGGRLSI 241 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 ++FHSLEDR+VK F + + + +T+K ++P++E+++ N+RS Sbjct: 242 ITFHSLEDRIVKNRFRINENPCTCPPDFPVCMCGKKSKGRVVTRKPILPSEEELSENKRS 301 Query: 307 RSAKLRAGMRTV 318 +SAKLR ++ Sbjct: 302 KSAKLRVFEKSR 313 >gi|240141491|ref|YP_002965971.1| S-adenosyl-dependent methyltransferase [Methylobacterium extorquens AM1] gi|263456428|sp|C5ATZ5|RSMH_METEA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|240011468|gb|ACS42694.1| S-adenosyl-dependent methyltransferase [Methylobacterium extorquens AM1] Length = 351 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 147/331 (44%), Positives = 201/331 (60%), Gaps = 9/331 (2%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQ 75 HVPVLL +V+A L+ + +D TFGAGGY+R+ + G VIA+DRDP A+ G Sbjct: 18 ARHVPVLLAEVLAALSLDRPGLAVDGTFGAGGYTRALLEAGPEVRVIAIDRDPTAIRGGA 77 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + + L Q F L + D+ D +V D+GVSSMQID RGFSF++ GP Sbjct: 78 DLVTASGGRLRLVQGRFGDLDTLIADQDEAQADWIVLDIGVSSMQIDEAQRGFSFRQDGP 137 Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 LDMRM G SA+D+VN L IL GEE+++ +A AIV+ R+ AP +TT L+ Sbjct: 138 LDMRMGGEGPSAADLVNGEEETTLADILYHFGEERRSRAVARAIVEARRRAPIETTAQLA 197 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 L+ V + IHPATRSFQ LRI VN+E+ EL +GL +AE+ LK GG L VV+FHS Sbjct: 198 DLVAGVVRPEPGSPIHPATRSFQGLRIAVNDELGELVRGLHAAERVLKPGGRLAVVTFHS 257 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRSAK 310 LEDR+VK+FF++RSG+ +P PA F+ +TK V+P++ + N RSRSAK Sbjct: 258 LEDRIVKQFFSARSGRAAQASRHVPGVERPAPKSFKLVTKGPVLPSEAETDVNPRSRSAK 317 Query: 311 LRAGMRTVERSIEDDSFVHLPRLPTLSQFRG 341 LRAG RT + S + + L +L +G Sbjct: 318 LRAGERTDAPAPPPLSAIEM--LASLPAPQG 346 >gi|196230915|ref|ZP_03129776.1| S-adenosyl-methyltransferase MraW [Chthoniobacter flavus Ellin428] gi|196225256|gb|EDY19765.1| S-adenosyl-methyltransferase MraW [Chthoniobacter flavus Ellin428] Length = 332 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 125/303 (41%), Positives = 177/303 (58%), Gaps = 7/303 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H VLL + + L PAPGKVI+D T G GG++ + G+ VI D+DP A++ + Sbjct: 28 HESVLLAETVERLAPAPGKVIVDGTLGGGGHTAALLAAGAQVIGFDQDPEALAFAGRKLA 87 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 ++ QF +F++ + + GV DG + DLGVSS Q+D +RGFSF GPLDMR Sbjct: 88 EFGGQFRPVHTSFAKAGEALDQLGVEKIDGAMLDLGVSSRQLDAPERGFSFMHDGPLDMR 147 Query: 137 MSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M + + SA+D+VN L +I GEE A +IA +V+ R APF+TT L+ + Sbjct: 148 MDPTNLISAADLVNTMAGDQLEKIFRNYGEEPAARKIAAHLVRDRLVAPFRTTLQLAQAV 207 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 ++ V +++R HPATR FQALRI VN E+E L GL + L GG L +++FHSLED Sbjct: 208 ERVVP--RHSRTHPATRVFQALRIAVNRELEALTLGLEQFSQRLAPGGRLAIITFHSLED 265 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHP-AVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 R+VK FF R+ + + +P +F++IT K VV + + N RSRSAKLR Sbjct: 266 RIVKVFFKERAAAFIDRPEWPEARPNPIHIFKAITGKPVVASDAEQRANPRSRSAKLRVV 325 Query: 315 MRT 317 R Sbjct: 326 ERI 328 >gi|332768872|gb|EGJ99051.1| S-adenosyl-methyltransferase MraW [Shigella flexneri 2930-71] Length = 312 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 118/312 (37%), Positives = 178/312 (57%), Gaps = 19/312 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ + Sbjct: 5 KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK 64 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +FS+ FS L +YV ++ +DG++ DLGVSS Q+D +RGFSF + G Sbjct: 65 TI---DDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDG 121 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + G SA++ + A D+ +L GEE A RIA AIV+R + P T++ Sbjct: 122 PLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEEHFAKRIARAIVERNREQPMTRTKE 181 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L ++SF Sbjct: 182 LAEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISF 240 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305 HSLEDR+VK+F S + + +++ K ++P +E+VA N R Sbjct: 241 HSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGK--LMPGEEEVAENPR 298 Query: 306 SRSAKLRAGMRT 317 +RS+ LR RT Sbjct: 299 ARSSVLRIAERT 310 >gi|323440951|gb|EGA98658.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus O11] gi|323442268|gb|EGA99898.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus O46] Length = 304 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 99/301 (32%), Positives = 158/301 (52%), Gaps = 9/301 (2%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRD 80 +L + I LN V +D T G G++ +IA+D+D A+ +E ++D Sbjct: 1 MLNETIDYLNVKENGVYIDCTLGGAGHALYLLNQLNDDGRLIAIDQDQTAIDNAKEVLKD 60 Query: 81 YKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 + + + + F +L + D + VDG+ +DLGVSS Q+D +RGFS+ LDMRM Sbjct: 61 HLHKVTFVHSNFRELTQILKDLNIEKVDGIYYDLGVSSPQLDIPERGFSYHHDATLDMRM 120 Query: 138 SCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 + ++A ++VN + + L +I GEEK + +IA I R+ P TT +L +I+ Sbjct: 121 DQTQELTAYEIVNNWSYEALVKIFYRYGEEKFSKQIARRIEAHREQQPITTTLELVDIIK 180 Query: 197 KTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + + + HPA R FQALRI VN+E+ + A + +K GG + V++FHSLED Sbjct: 181 EGIPAKARRKGGHPAKRVFQALRIAVNDELSAFEDSIEQAIELVKVGGRISVITFHSLED 240 Query: 256 RLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 RL K+ F R + A+ + + +K + T+ED+ N R+RSAKLR Sbjct: 241 RLCKQVFQEYEKGPEVPRGLPVIPEAYTPKLKRVNRKPITATEEDLDDNNRARSAKLRVA 300 Query: 315 M 315 Sbjct: 301 E 301 >gi|301026110|ref|ZP_07189585.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 69-1] gi|300395681|gb|EFJ79219.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 69-1] Length = 313 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 119/312 (38%), Positives = 179/312 (57%), Gaps = 19/312 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A+S + Sbjct: 6 KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAISVAK 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +FS+ FS L +YV ++ +DG++ DLGVSS Q+D +RGFSF + G Sbjct: 66 TI---DDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDG 122 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + G SA++ + A D+ +L GEE+ A RIA AIV+R + P T++ Sbjct: 123 PLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKE 182 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L ++SF Sbjct: 183 LAEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISF 241 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305 HSLEDR+VK+F S + + +++ K ++P +E+VA N R Sbjct: 242 HSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGK--LMPGEEEVAENPR 299 Query: 306 SRSAKLRAGMRT 317 +RS+ LR RT Sbjct: 300 ARSSVLRIAERT 311 >gi|15606908|ref|NP_214289.1| hypothetical protein aq_1875 [Aquifex aeolicus VF5] gi|8134826|sp|O67721|RSMH_AQUAE RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|2984161|gb|AAC07695.1| hypothetical protein aq_1875 [Aquifex aeolicus VF5] Length = 294 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 122/305 (40%), Positives = 181/305 (59%), Gaps = 22/305 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H PVLL + + L GK+ +D T G GG+++ K + +I +DRD A+ +E Sbjct: 5 HKPVLLRESVEFLTENGGKIYVDCTLGGGGHAKEILKKRKDIFLIGIDRDEEAIEIAKEN 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 +++++ +FS+++A F L + ++G VDG +FDLGVS Q+ G+RGF+FQ+ PLD Sbjct: 65 LKEFEGRFSIYKANFKDLDLVLKEEGIDKVDGFLFDLGVSMYQLK-GERGFTFQEDQPLD 123 Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM ++A VVN ++L RIL GEEK A RIA AIV+RR+ P +TT +L Sbjct: 124 MRMDKEQTLTACKVVNNYPERELIRILKEYGEEKFAVRIAKAIVQRRKKKPIETTGELVD 183 Query: 194 LIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I V + K+ +IHPATR+FQA+RI VN E+E L + L + G L+V++FHS Sbjct: 184 VILSVVPEYYKHGKIHPATRTFQAIRIEVNKELESLKEALEKTPYHFNSKGRLVVITFHS 243 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK F + + + F+ ITKK V P++E++ N SRSAKLR Sbjct: 244 LEDRIVKHFIKEKEKEGI--------------FRIITKKPVTPSEEEIRENPASRSAKLR 289 Query: 313 AGMRT 317 + Sbjct: 290 VAEKI 294 >gi|319407511|emb|CBI81159.1| S-adenosyl-methyltransferase [Bartonella sp. 1-1C] Length = 349 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 163/325 (50%), Positives = 209/325 (64%), Gaps = 3/325 (0%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQE 76 + H+PVLL+ V+A L P G ++D TFGAGGYS + G+ VIALDRDP A+ GQ Sbjct: 25 VERHIPVLLQSVLAELAPLAGAKVIDGTFGAGGYSCALLNAGAEVIALDRDPHAIREGQA 84 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + + + L QA FSQL V + VD V+ D+GVSSMQ+D +RGFSFQK GPLDMR Sbjct: 85 LVDQFFPRLRLVQAEFSQLDHIVEE-KVDAVILDIGVSSMQLDEPERGFSFQKDGPLDMR 143 Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 M G +A+DVVN DL ++ GEE+ A RIA I KRR PF T DL+ I+ Sbjct: 144 MGQIGFTAADVVNYLRADDLAQLFKTFGEERYAVRIARMIEKRRCIRPFLRTIDLAHAIE 203 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 + + IHPATR FQALRI+VNNE+ ELA GL +AE+ LKAGG L VVSFHSLEDR Sbjct: 204 SLIGRKLGDHIHPATRVFQALRIYVNNELGELACGLFAAERVLKAGGRLAVVSFHSLEDR 263 Query: 257 LVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 +VKKFF++RSG R++ + PA F + K V PTQE++ N R+RSA+LR G+R Sbjct: 264 MVKKFFSARSGHKKGSRYLPEIKSAPATFIPLFKGVKTPTQEELQHNPRARSARLRMGVR 323 Query: 317 TVERSIEDDSFVHLPRLPTLSQFRG 341 T E +I D + L L + +F G Sbjct: 324 TQEVAIAAD--MKLFGLAEIVRFEG 346 >gi|229829369|ref|ZP_04455438.1| hypothetical protein GCWU000342_01458 [Shuttleworthia satelles DSM 14600] gi|229792532|gb|EEP28646.1| hypothetical protein GCWU000342_01458 [Shuttleworthia satelles DSM 14600] Length = 318 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 104/315 (33%), Positives = 175/315 (55%), Gaps = 10/315 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H V+L + I L + +D T G G+SR +I +D+D A++ G+ Sbjct: 4 KHYSVMLRETIDALAVKSDGIYVDGTMGGAGHSRQIASRLSGRGRLICIDQDADAIAAGK 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E ++D+ ++ ++ ++ + +++ + + G V+G++ DLGVSS Q+D +RGFS+ G Sbjct: 64 EKLKDFSDRVTIVRSNYERMRQILEELGIASVNGILLDLGVSSYQLDTPERGFSYMDEGA 123 Query: 133 L-DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 L DMRM C + +A D+VN+ + ++L R++ GE++ A IA IV RQ +T + Sbjct: 124 LLDMRMDCRNPRTARDIVNEYSERELFRMIRNYGEDRFAKNIAKNIVLARQEKTIETVGE 183 Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I+++V + HPA R++QA+RI +N E++ L + L GG V+S Sbjct: 184 LNEVIRRSVPRKIQVTGGHPAKRTYQAIRIELNRELDVLRDHIDEMIDLLADGGRFAVIS 243 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK F + + + + + IT+K ++P +E++A N RSRS Sbjct: 244 FHSLEDRIVKNAFQTAEDPCICPPEFPVCVCGRKSKGRVITRKPILPGKEELAENHRSRS 303 Query: 309 AKLRAGMRTVERSIE 323 AKLR R V R E Sbjct: 304 AKLRVFERRVVREEE 318 >gi|295692684|ref|YP_003601294.1| s-adenosyl-l-methionine-dependent methyltransferase mraw [Lactobacillus crispatus ST1] gi|295030790|emb|CBL50269.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Lactobacillus crispatus ST1] Length = 315 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 106/311 (34%), Positives = 162/311 (52%), Gaps = 13/311 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76 H VLL + I L P G + +DATFG GG++R ++ D+D +A+ + Sbjct: 4 KHTSVLLHETIDNLKPKNGGLYVDATFGGGGHARYLLSKIDTGTLVGFDQDEYAIKSAKL 63 Query: 77 TMR-----DYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSF 127 D + + L FS L+ + G+DG+ +DLGVSS Q D DRGFS+ Sbjct: 64 NFANLLQPDSEPRLELVHDNFSNLEKDLVKLGYSDGIDGIYYDLGVSSPQFDQADRGFSY 123 Query: 128 QKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + LDMRM S + A +VN + K+L IL G+EK + +IAH IV+RR+ P Sbjct: 124 RYDARLDMRMDQSQDLDAYQLVNTLSQKELADILYQYGDEKFSRQIAHRIVERRREKPIA 183 Query: 187 TTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT +L +I+ + ++ HPA +SFQALR+ VN+E++ L L A K L+ GG + Sbjct: 184 TTFELVDVIKDAIPAYARRTGGHPAKKSFQALRVAVNHELDVLQASLEEAIKILRPGGRI 243 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V++F S ED++VK+ F S + + + + K +V + ++ N R Sbjct: 244 SVITFQSHEDKIVKRIFKKYSEVEVPRGMPFIPDGMKPTLRLVNHKPIVASTSELENNNR 303 Query: 306 SRSAKLRAGMR 316 S SAKLR + Sbjct: 304 SHSAKLRVAEK 314 >gi|281421043|ref|ZP_06252042.1| S-adenosyl-methyltransferase MraW [Prevotella copri DSM 18205] gi|281404961|gb|EFB35641.1| S-adenosyl-methyltransferase MraW [Prevotella copri DSM 18205] Length = 304 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 114/304 (37%), Positives = 168/304 (55%), Gaps = 16/304 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HVPVLL++ + LN PG + +D TFG GG+SR G+++ + D+D A E Sbjct: 9 HVPVLLKESVDGLNIQPGGIYVDVTFGGGGHSREILSRLTEGAHLYSFDQDADA-----E 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQKSGPL 133 E F+ + F L++++ GVDG+ + DLGVSS D RGFSF+ PL Sbjct: 64 RNVVANENFTFVCSNFRFLKNWMRYYGVDGLDGLLADLGVSSHHFDDETRGFSFRFDSPL 123 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +G +A+D+VN+ + L I + GE K + RIA A+VK R P TT+D Sbjct: 124 DMRMNKRAGKTAADIVNEYDEGALADIFYLYGELKNSRRIASALVKARAEKPILTTKDFM 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 + ++ F + + FQALRI VN+E++ L + LRSA LK GG L V+++HS Sbjct: 184 AAVEPL--FKREREKKDMAKLFQALRIEVNHEMDALKEMLRSATALLKPGGRLSVITYHS 241 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK + + + + P F+ + KV+VP ++ N RSRSAKLR Sbjct: 242 LEDRIVKNMMKAGNAEGKIEQDFFGRIETP--FKLVNNKVIVPDADEQERNPRSRSAKLR 299 Query: 313 AGMR 316 + Sbjct: 300 IAEK 303 >gi|225871093|ref|YP_002747040.1| S-adenosyl-methyltransferase MraW [Streptococcus equi subsp. equi 4047] gi|262826692|sp|C0M7A8|RSMH_STRE4 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|225700497|emb|CAW94939.1| S-adenosyl-methyltransferase MraW [Streptococcus equi subsp. equi 4047] Length = 316 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 104/320 (32%), Positives = 171/320 (53%), Gaps = 15/320 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 M++ H HV VLL + + +L+ P + +DAT G G+S + ++ D Sbjct: 1 MTNEFH-----HVTVLLHEAVDMLDIKPDGIYVDATLGGSGHSAYLLSLLGDKGHLYCFD 55 Query: 66 RDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120 +D A+ QE ++ Y K Q + + F L+ + + GV DG+++DLGVSS Q+D Sbjct: 56 QDQKAIDHAQEQLKPYIDKGQVTFIKDNFRHLKARLLEHGVTEIDGILYDLGVSSPQLDE 115 Query: 121 GDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS+++ PLDMRM + ++A +VVN + DL RI GE+K + +IA I + Sbjct: 116 RERGFSYKQDAPLDMRMDSQAALTAYEVVNTYDFNDLVRIFFKYGEDKFSKQIARKIEQA 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R P TT +L++LI+ + + HPA + FQA+RI VN+E+ ++ A + Sbjct: 176 RAIKPISTTTELAALIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADASIQRAIEL 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L G + V++FHSLEDRL K F S + + +++K ++P+Q+ Sbjct: 236 LALDGRISVITFHSLEDRLTKHLFKEASTADAPKGLPFIPDELKPKLELVSRKPILPSQK 295 Query: 299 DVAFNRRSRSAKLRAGMRTV 318 ++ N R+ SAKLR + Sbjct: 296 ELMANNRAHSAKLRVARKVR 315 >gi|300715300|ref|YP_003740103.1| S-adenosyl-methyltransferase MraW [Erwinia billingiae Eb661] gi|299061136|emb|CAX58243.1| S-adenosyl-methyltransferase MraW [Erwinia billingiae Eb661] Length = 313 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 125/315 (39%), Positives = 172/315 (54%), Gaps = 15/315 (4%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAV 71 H VLL++ + LN + LD TFG GG+SR + A+DRDP A+ Sbjct: 2 QDNFKHTTVLLDEAVNGLNIKSDGIYLDGTFGRGGHSRLILSQLGEHGRLYAIDRDPQAI 61 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSF 127 + E +F + FS L DY + G +DG++ DLGVSS Q+D +RGFSF Sbjct: 62 AAAAEI---TDPRFQIIHGPFSALADYADELGLTGKIDGILLDLGVSSPQLDDAERGFSF 118 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + GPLDMRM + G SAS + QA D+ +L GEE+ A RIA AIV+R + P Sbjct: 119 MRDGPLDMRMDPTKGQSASQWLLQAEESDIAFVLKTFGEERFAKRIARAIVERNREQPMT 178 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T++L+ +I K+ HPATRSFQA+RI+VN+E+EE+ Q L+ A AL G L Sbjct: 179 RTKELADVIYAATPV-KDKFKHPATRSFQAIRIWVNSELEEIEQALKGALTALAPEGRLS 237 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV---VVPTQEDVAFN 303 V+SFHSLEDR+VK+F +S + + A A K ++P E+V N Sbjct: 238 VISFHSLEDRIVKRFMREQSRGPQVPAGIPMTEAQLAKLGGRHLKAFGKMMPGDEEVKEN 297 Query: 304 RRSRSAKLRAGMRTV 318 R+RS+ LR RT Sbjct: 298 PRARSSVLRVAERTA 312 >gi|218687959|ref|YP_002396171.1| S-adenosyl-methyltransferase MraW [Escherichia coli ED1a] gi|263446439|sp|B7MNU1|RSMH_ECO81 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|218425523|emb|CAR06306.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Escherichia coli ED1a] Length = 313 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 118/312 (37%), Positives = 178/312 (57%), Gaps = 19/312 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H VLL++ + LN P +D TFG GG+SR ++A+DRDP A++ + Sbjct: 6 KHTTVLLDEAVNGLNIRPDGTYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +FS+ FS L +YV ++ +DG++ DLGVSS Q+D +RGFSF + G Sbjct: 66 TI---DDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDG 122 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + G SA++ + A D+ +L GEE+ A RIA AIV+R + P T++ Sbjct: 123 PLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKE 182 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L ++SF Sbjct: 183 LAEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISF 241 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305 HSLEDR+VK+F S + + +++ K ++P +E+VA N R Sbjct: 242 HSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGK--LMPGEEEVAENPR 299 Query: 306 SRSAKLRAGMRT 317 +RS+ LR RT Sbjct: 300 ARSSVLRIAERT 311 >gi|74310701|ref|YP_309120.1| S-adenosyl-methyltransferase MraW [Shigella sonnei Ss046] gi|88909219|sp|Q3Z5S7|RSMH_SHISS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|73854178|gb|AAZ86885.1| putative apolipoprotein [Shigella sonnei Ss046] gi|323165965|gb|EFZ51745.1| S-adenosyl-methyltransferase MraW [Shigella sonnei 53G] Length = 313 Score = 367 bits (944), Expect = e-100, Method: Composition-based stats. Identities = 118/312 (37%), Positives = 179/312 (57%), Gaps = 19/312 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ + Sbjct: 6 KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +FS+ FS L +YV ++ +DG++ DLGVSS Q+D +RGFSF + G Sbjct: 66 TI---DDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDG 122 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + G SA++ + A D+ +L GEE+ A RIA AIV+R + P T++ Sbjct: 123 PLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKE 182 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L ++SF Sbjct: 183 LAEVVAVATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISF 241 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305 HSLEDR+VK+F S + + +++ K ++P +E+VA N R Sbjct: 242 HSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGK--LMPGEEEVAENPR 299 Query: 306 SRSAKLRAGMRT 317 +RS+ LR RT Sbjct: 300 ARSSVLRIAERT 311 >gi|254880783|ref|ZP_05253493.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 4_3_47FAA] gi|319639793|ref|ZP_07994523.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 3_1_40A] gi|254833576|gb|EET13885.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 4_3_47FAA] gi|317388610|gb|EFV69459.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 3_1_40A] Length = 304 Score = 367 bits (944), Expect = e-100, Method: Composition-based stats. Identities = 111/304 (36%), Positives = 168/304 (55%), Gaps = 16/304 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 HVPVLL + + +N PG + +DATFG GG+S+ +++ + D+D A Sbjct: 9 HVPVLLNESVDGMNIQPGGIYVDATFGGGGHSKEILSRLDSTAHLYSFDQDEDAEKNIVS 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +F+ ++ F L +++ GV D ++ DLGVSS D +RGFSF+ G L Sbjct: 69 -----DSRFTFVRSNFRYLPNFLRYYGVEGVDAILADLGVSSHHFDDSERGFSFRFEGKL 123 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +G++A+DVVN + + L I + GE K + ++A AIVK R T D Sbjct: 124 DMRMNKRAGMTAADVVNTYDEERLANIFYLYGELKNSRKLASAIVKARGVKQIVTIGDFL 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ +F + + FQALRI VN E+E L + L +A KALK GG L+V+++HS Sbjct: 184 EVIKP--FFGREREKKELAKVFQALRIEVNQEMEALKEMLYAATKALKPGGRLVVITYHS 241 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK + + + A + + P F+ + KV+V E+V N RSRSAKLR Sbjct: 242 LEDRMVKNIMKTGNIEGKAEQDFFGNVQTP--FKLVNNKVIVAGNEEVTRNPRSRSAKLR 299 Query: 313 AGMR 316 + Sbjct: 300 IAEK 303 >gi|303327356|ref|ZP_07357797.1| S-adenosyl-methyltransferase MraW [Desulfovibrio sp. 3_1_syn3] gi|302862296|gb|EFL85229.1| S-adenosyl-methyltransferase MraW [Desulfovibrio sp. 3_1_syn3] Length = 328 Score = 367 bits (944), Expect = e-99, Method: Composition-based stats. Identities = 116/327 (35%), Positives = 171/327 (52%), Gaps = 10/327 (3%) Query: 6 CKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIA 63 + M HVPVL + + L P G LD T G GG++ + GS + Sbjct: 2 AQVMQDTEERASTRHVPVLPAETLEALAPRAGGRYLDGTLGMGGHAAAVLSAAPGSELCG 61 Query: 64 LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDC 120 LDRD A+ + + + + F +S+ + + + VDG + D+GVSS+Q+D Sbjct: 62 LDRDEQALDLARARLAPFGGRAHFFHCRYSRFAEALKELQWDKVDGALLDIGVSSLQLDE 121 Query: 121 GDRGFSFQKSGPLDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178 +RGFSF GPLDMRM +SA VN+ + L + LGEE QA RIA IV+ Sbjct: 122 NERGFSFYGDGPLDMRMDQHSGELSAWHWVNRESFARLKECIATLGEEPQAGRIARVIVE 181 Query: 179 RRQSAPFQTTQDLSSLIQKTVYFSKNNR--IHPATRSFQALRIFVNNEIEELAQGLRSAE 236 RQ AP +T +L++L++K + + HPATR+FQALR+ VN+E+ EL + L Sbjct: 182 ARQKAPIDSTAELAALVEKAYPPAWRAKARRHPATRTFQALRMAVNDELGELRRFLDQIL 241 Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVP 295 L GG L V++FHSLEDR+VK+ + RH + H + + KK + Sbjct: 242 AWLPVGGRLAVITFHSLEDRMVKQAMRHWAEGCRCPRHVPVCVCRHQPEVRILHKKPLQA 301 Query: 296 TQEDVAFNRRSRSAKLRAGMRTVERSI 322 E++A N R+ SAKLRA + E ++ Sbjct: 302 GSEELAVNPRAGSAKLRAVEKIAEAAV 328 >gi|15892780|ref|NP_360494.1| S-adenosyl-methyltransferase MraW [Rickettsia conorii str. Malish 7] gi|20139037|sp|Q92HB4|RSMH_RICCN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|15619960|gb|AAL03395.1| unknown [Rickettsia conorii str. Malish 7] Length = 307 Score = 367 bits (944), Expect = e-99, Method: Composition-based stats. Identities = 129/307 (42%), Positives = 184/307 (59%), Gaps = 5/307 (1%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQ 75 I HV V+L +++ L+P G+ LD TFGAGGYS++ + V ALDRDP + + Sbjct: 2 IQSHVSVMLNEMLEALSPKAGESYLDCTFGAGGYSKAILESCNCYVTALDRDPNVIKRAE 61 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 E + Y E+F + F+ + +K DG+V DLGVSSMQ+D DRGFSF GPLDM Sbjct: 62 EIQQHYGERFDFVETNFADSFAKLKEKKFDGIVLDLGVSSMQLDIADRGFSFLHDGPLDM 121 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RMS G+SA + VN A K+L ++ G+E + RIA IV+ R++A +T L+ ++ Sbjct: 122 RMSGQGLSAEEFVNAAEEKELADVIYKYGDESFSRRIAKRIVEYRKTARIDSTSKLAEIV 181 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + ++ F K +I PAT++FQA+RI+VN+E+ EL Q L + + LK G L+VVSFHSLED Sbjct: 182 RSSIGFRK-GKIDPATKTFQAIRIYVNDELGELEQFLVNVKNILKKDGRLVVVSFHSLED 240 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNA---HPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 R+VK FF S K + + + IT K + P+ ++V N R+RSAKLR Sbjct: 241 RIVKNFFKENSEKPVVRSKYAKDDMTIDPNKWLKIITNKALAPSDKEVGLNIRARSAKLR 300 Query: 313 AGMRTVE 319 A E Sbjct: 301 AAKAIYE 307 >gi|332142432|ref|YP_004428170.1| 16S rRNA m(4)C1402 methyltranserfase [Alteromonas macleodii str. 'Deep ecotype'] gi|263446686|sp|B4RWY7|RSMH_ALTMD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|327552454|gb|AEA99172.1| 16S rRNA m(4)C1402 methyltranserfase [Alteromonas macleodii str. 'Deep ecotype'] Length = 313 Score = 367 bits (944), Expect = e-99, Method: Composition-based stats. Identities = 121/308 (39%), Positives = 179/308 (58%), Gaps = 13/308 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H+ VLL++ I L P + +DATFG GG+S +IA DRDP A+ Sbjct: 8 KHISVLLDECIEALAIKPNGIYIDATFGRGGHSAHILDALGEKGRLIAFDRDPQAIKAA- 66 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E D ++FS+ + F + + + G +DGV+ DLGVSS Q+D +RGFSF + G Sbjct: 67 ERFAD-DKRFSIIHSPFGDMAEEIEALGLTGKIDGVLMDLGVSSPQLDDAERGFSFLRDG 125 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S G SA+D + A +D+T+++ GEEK RIAHAIV R+ P T Sbjct: 126 PLDMRMDTSRGQSAADWLASAEEQDITQVIKEFGEEKFGKRIAHAIVNTRKDTPITRTAQ 185 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ +I + V K+ HPATR+FQ +RI++N E+E+L GL++A + L G L V+SF Sbjct: 186 LAKIIDEAVPV-KDKFKHPATRAFQGIRIYINAELEQLRVGLKAATQVLAKEGRLAVISF 244 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI--TKKVVVPTQEDVAFNRRSRS 308 HSLEDRLVK+F +S + ++ + A + + K + P+++++A N RSRS Sbjct: 245 HSLEDRLVKRFIKDQSKGKVVPHNLPITQAEIDADKVLKALGKAIKPSEQEIANNVRSRS 304 Query: 309 AKLRAGMR 316 + LR + Sbjct: 305 SVLRVAEK 312 >gi|326406411|gb|ADZ63482.1| S-adenosyl-methyltransferase MraW [Lactococcus lactis subsp. lactis CV56] Length = 317 Score = 367 bits (944), Expect = e-99, Method: Composition-based stats. Identities = 102/307 (33%), Positives = 164/307 (53%), Gaps = 9/307 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76 H VLL + + +L P + +DAT G G+S ++ + D+D A + Sbjct: 8 KHDTVLLHETVDMLEVKPNGIYVDATLGGAGHSEYLLSKLTNGHLYSFDQDETAHENAKV 67 Query: 77 TMRD--YKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + +++ +L ++ F L+ + + GV DG+++DLGVSS Q D RGFS++K Sbjct: 68 RLSEQLAEDKVTLIKSNFRYLKSALAELGVTKIDGILYDLGVSSPQFDDSQRGFSYKKEA 127 Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM + +SA +VVN + L RI GE+K + +IA I + R+ P +TT + Sbjct: 128 RLDMRMDQNQTLSAYEVVNDYPYETLVRIFFRYGEDKFSKQIARKIEQARKIKPIETTIE 187 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ LI+ + + + HPA R FQA+RI VN+E+ + + A LK G + V++ Sbjct: 188 LADLIKSALPQKELKKKGHPAKRIFQAIRIEVNDELGAAEESIEQAIDLLKVDGRISVIT 247 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K F S + + A + I +K V+ ++E++ FN R+ SA Sbjct: 248 FHSLEDRLTKTIFKEYSTVNVPKGLPMLPKDMEAKLKLINRKPVLASEEELEFNNRAHSA 307 Query: 310 KLRAGMR 316 KLR + Sbjct: 308 KLRVAQK 314 >gi|261823024|ref|YP_003261130.1| S-adenosyl-methyltransferase MraW [Pectobacterium wasabiae WPP163] gi|261607037|gb|ACX89523.1| S-adenosyl-methyltransferase MraW [Pectobacterium wasabiae WPP163] Length = 314 Score = 367 bits (944), Expect = e-99, Method: Composition-based stats. Identities = 121/311 (38%), Positives = 181/311 (58%), Gaps = 18/311 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H VLL++ + LN G +D TFG GG+SR ++A+DRDP A+ + Sbjct: 6 KHTSVLLDEAVNGLNIRSGGTYIDGTFGRGGHSRLILSQLGPEGRLLAIDRDPQAIEAAK 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +FS+ FS + DYV ++G +DGV+ DLGVSS Q+D +RGFSF + G Sbjct: 66 ---AIDDPRFSIIHGPFSAMADYVAERGLTGQIDGVLLDLGVSSPQLDDPERGFSFMRDG 122 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + G+SA++ + +A D+ +L GEE+ A RIA AIV+R ++ P T++ Sbjct: 123 PLDMRMDPTRGLSAAEWLMKAEADDIVWVLKTFGEERFAKRIARAIVERNRTEPMTRTKE 182 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ LI + ++ HPATRSFQA+RI++N+E+EE+ + L A L G L V+SF Sbjct: 183 LAELIAAASPVREKHK-HPATRSFQAIRIYINSELEEIERALEGALSVLAPQGRLSVISF 241 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNRR 305 HSLEDR+VK+F +S + + A + + KK ++P++E+VA N R Sbjct: 242 HSLEDRIVKRFIRHQSRGPQVPAGLPLTEAQLRSQGGQTLKPVGKK-LMPSEEEVAENPR 300 Query: 306 SRSAKLRAGMR 316 +RS+ LR R Sbjct: 301 ARSSVLRFAER 311 >gi|260102637|ref|ZP_05752874.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Lactobacillus helveticus DSM 20075] gi|260083561|gb|EEW67681.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Lactobacillus helveticus DSM 20075] Length = 330 Score = 367 bits (944), Expect = 1e-99, Method: Composition-based stats. Identities = 104/311 (33%), Positives = 163/311 (52%), Gaps = 13/311 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76 H VLL + I L P G + +DATFG GG+++ ++ D+D +A+ + Sbjct: 19 KHTSVLLHETIDNLKPKNGGLYVDATFGGGGHAKYLLSKIETGTLVGFDQDEYAIKSAEL 78 Query: 77 TMRDY-----KEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSF 127 D + + L FS L+ + G+DG+ +DLGVSS Q D DRGFS+ Sbjct: 79 NFADLLQPDSEPRLKLVHDNFSNLEQDLVKLGYSDGIDGIYYDLGVSSPQFDQADRGFSY 138 Query: 128 QKSGPLDMRMSCSGIS-ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + + LDMRM S + A +VN + K+L IL G+EK + +IAH IV+RR+ P Sbjct: 139 RYNARLDMRMDQSQDTDAYQLVNTLSQKELADILYQYGDEKFSRQIAHRIVERRKDKPIV 198 Query: 187 TTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT +L +I++ + ++ HPA +SFQALR+ VN+E++ L L A + L+ GG + Sbjct: 199 TTFELVDIIKEAIPAYARRTGGHPAKKSFQALRVAVNHELDVLQASLEEAIRILRPGGRI 258 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V++F S ED++VKK F S + + + +K + + ++ N R Sbjct: 259 SVITFQSHEDKIVKKIFKKYSEVEVPRGMPFVPDDMKPTLRLENRKPITASTSELENNNR 318 Query: 306 SRSAKLRAGMR 316 S SAKLR + Sbjct: 319 SHSAKLRVAEK 329 >gi|163854037|ref|YP_001642080.1| S-adenosyl-methyltransferase MraW [Methylobacterium extorquens PA1] gi|263456431|sp|A9VW37|RSMH_METEP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|163665642|gb|ABY33009.1| S-adenosyl-methyltransferase MraW [Methylobacterium extorquens PA1] Length = 351 Score = 367 bits (944), Expect = 1e-99, Method: Composition-based stats. Identities = 148/326 (45%), Positives = 198/326 (60%), Gaps = 8/326 (2%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQ 75 HVPVLL +V+A L+ + +D TFGAGGY+R+ + G VIA+DRDP A+ G Sbjct: 18 ARHVPVLLAEVLAALSLDRPGLAVDGTFGAGGYTRALLEAGPEVRVIAIDRDPTAIRGGA 77 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + + L Q F L + D+ D VV D+GVSSMQID RGFSF++ GP Sbjct: 78 DLVTASGGRLRLVQGRFGDLDTLIADQDEPQADWVVLDIGVSSMQIDEAQRGFSFRQDGP 137 Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 LDMRM G SA+D+VN L IL GEE+++ +A AIV+ R+ AP +TT L+ Sbjct: 138 LDMRMGGEGPSAADLVNGEEETTLADILYHFGEERRSRAVARAIVEARRRAPIETTAQLA 197 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 L+ V + IHPATRSFQ LRI VN+E+ EL +GL +AE+ LK GG L VV+FHS Sbjct: 198 DLVAGVVRPEPGSPIHPATRSFQGLRIAVNDELGELVRGLHAAERVLKPGGRLAVVTFHS 257 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRSAK 310 LEDR+VK+FF++RSG+ +P PA F+ +TK V+P++ + N RSRSAK Sbjct: 258 LEDRIVKQFFSARSGRAAQASRHVPGVERPAPKSFKLVTKGPVLPSEAETDVNPRSRSAK 317 Query: 311 LRAGMRTVERSIEDDSFVH-LPRLPT 335 LRAG RT + S + L LP Sbjct: 318 LRAGERTDAPAPPPLSAIETLASLPA 343 >gi|295398679|ref|ZP_06808703.1| S-adenosyl-methyltransferase MraW [Aerococcus viridans ATCC 11563] gi|294973114|gb|EFG48917.1| S-adenosyl-methyltransferase MraW [Aerococcus viridans ATCC 11563] Length = 316 Score = 367 bits (944), Expect = 1e-99, Method: Composition-based stats. Identities = 102/320 (31%), Positives = 167/320 (52%), Gaps = 16/320 (5%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALD 65 M++ H H+ VLL + + L P + +D T G G+S +IA D Sbjct: 1 MANEFH-----HISVLLNESVDGLAIKPNGIYVDCTLGGAGHSSKIAAALSDEGRLIAFD 55 Query: 66 RDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDC 120 +D A+ ++ + + +L F +Q + G VDG+++DLGVSS Q+D Sbjct: 56 QDLVAIGNAEKVLAAEIESGKVTLVHNNFRHIQSELEKMGITGVDGILYDLGVSSPQLDE 115 Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS+ + PLDMRM + ++A ++N DL RI GEEK + +IA I +R Sbjct: 116 IERGFSYHQDAPLDMRMDQTQALTAETIINDWEYNDLVRIFYRYGEEKFSKQIARKIEQR 175 Query: 180 RQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R T++L ++++ + ++ HPA R FQA+RI VN+E+ + L A Sbjct: 176 RADHRITRTEELVDIVKEAIPAPARRKGGHPAKRIFQAVRIAVNDELGAIEDSLEQALNL 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297 L GG + +SF SLEDR+VK+ F S G+ + + + A F+ + +K + ++ Sbjct: 236 LNVGGRVSAISFQSLEDRIVKQMFKDASTGEELPANLPVINADIEAPFKLVNRKPIYASE 295 Query: 298 EDVAFNRRSRSAKLRAGMRT 317 E++A+N R++SAKLR R Sbjct: 296 EELAYNSRAQSAKLRIIERI 315 >gi|283798338|ref|ZP_06347491.1| S-adenosyl-methyltransferase MraW [Clostridium sp. M62/1] gi|291073921|gb|EFE11285.1| S-adenosyl-methyltransferase MraW [Clostridium sp. M62/1] gi|295092799|emb|CBK78906.1| S-adenosyl-methyltransferase MraW [Clostridium cf. saccharolyticum K10] Length = 317 Score = 367 bits (943), Expect = 1e-99, Method: Composition-based stats. Identities = 100/307 (32%), Positives = 168/307 (54%), Gaps = 10/307 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VLL + + LN P + +D T G GG++ G +I LD+D A++ E Sbjct: 5 HTSVLLYETVDSLNIRPDGIYVDGTLGGGGHASLVLSRLGEGGRLIGLDQDADAIAAATE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS-GP 132 ++ Y ++ ++ + + +++ + G VDG+ DLGVSS Q+D +RGF++++ P Sbjct: 65 RLKPYGDRVTVIRTNYENIKEALASLGIAKVDGIYLDLGVSSYQLDTAERGFTYREDDAP 124 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM +A D+VN + +L RI+ GE++ A IA IVK RQ +T +L Sbjct: 125 LDMRMDQRRSETAKDIVNGYSEMELYRIIRDYGEDRFAKNIAKHIVKARQEKEIETAGEL 184 Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 + +I+ + + HPA R+FQA+RI +N E++ L + + + L GG L V++F Sbjct: 185 TEIIRAAIPAKIRATGGHPAKRTFQAIRIELNRELQVLENSIDTMIELLNPGGRLSVITF 244 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK F + + + +T+K ++P+ E+++ N+RS+SA Sbjct: 245 HSLEDRIVKNRFRINENPCTCPPEFPVCMCGKKSRGRVVTRKPILPSDEELSANKRSKSA 304 Query: 310 KLRAGMR 316 KLR + Sbjct: 305 KLRVFEK 311 >gi|150003970|ref|YP_001298714.1| S-adenosyl-methyltransferase MraW [Bacteroides vulgatus ATCC 8482] gi|294778005|ref|ZP_06743439.1| S-adenosyl-methyltransferase MraW [Bacteroides vulgatus PC510] gi|263445994|sp|A6L078|RSMH_BACV8 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|149932394|gb|ABR39092.1| S-adenosyl-methyltransferase MraW [Bacteroides vulgatus ATCC 8482] gi|294448063|gb|EFG16629.1| S-adenosyl-methyltransferase MraW [Bacteroides vulgatus PC510] Length = 304 Score = 367 bits (943), Expect = 1e-99, Method: Composition-based stats. Identities = 111/304 (36%), Positives = 167/304 (54%), Gaps = 16/304 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 HVPVLL + + +N PG + +DATFG GG+S+ +++ + D+D A Sbjct: 9 HVPVLLNESVDGMNIQPGGIYVDATFGGGGHSKEILSRLDSTAHLYSFDQDEDAEKNIVS 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +F+ ++ F L +++ GV D ++ DLGVSS D +RGFSF+ G L Sbjct: 69 -----DSRFTFVRSNFRYLPNFLRYYGVEGVDAILADLGVSSHHFDDSERGFSFRFEGKL 123 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +G++A+DVVN + + L I + GE K + ++A AIVK R T D Sbjct: 124 DMRMNKRAGMTAADVVNTYDEERLANIFYLYGELKNSRKLASAIVKARGVKQIVTIGDFL 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ F + + FQALRI VN E+E L + L +A KALK GG L+V+++HS Sbjct: 184 EVIKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLYAATKALKPGGRLVVITYHS 241 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK + + + A + + P F+ + KV+V E+V N RSRSAKLR Sbjct: 242 LEDRMVKNIMKTGNIEGKAEQDFFGNVQTP--FKLVNNKVIVAGNEEVTRNPRSRSAKLR 299 Query: 313 AGMR 316 + Sbjct: 300 IAEK 303 >gi|295688554|ref|YP_003592247.1| S-adenosyl-methyltransferase MraW [Caulobacter segnis ATCC 21756] gi|295430457|gb|ADG09629.1| S-adenosyl-methyltransferase MraW [Caulobacter segnis ATCC 21756] Length = 311 Score = 367 bits (943), Expect = 1e-99, Method: Composition-based stats. Identities = 141/313 (45%), Positives = 199/313 (63%), Gaps = 5/313 (1%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQ 75 + H+ VLL++V+ L PG V++D TFGAGGY+R+ G++VI DRDP + Sbjct: 2 SAAPHISVLLDEVVEALGAGPGDVVVDGTFGAGGYTRAVLATGASVIGFDRDPTVQRFTE 61 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 ++F L QA FS++ D + + VDGV+ DLGVSSMQ+D +RGFSF + GPLDM Sbjct: 62 GL---PADRFRLIQARFSEMLDELGPESVDGVMLDLGVSSMQLDQAERGFSFMRDGPLDM 118 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RM +G +A+D+VN + +L RIL + GEE + RIA I++RR+ PF+ T DL+ +I Sbjct: 119 RMGDTGPTAADLVNTLDHAELARILYVYGEEHASRRIASFILRRREERPFERTLDLAEVI 178 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 ++ V K ++HPATRSFQ LRI VN+E+ EL GL +AE+ LK GG L+VV+FHSLED Sbjct: 179 ERAVGGRKGAKVHPATRSFQGLRIAVNDELGELEAGLAAAERVLKPGGRLVVVTFHSLED 238 Query: 256 RLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 R+VK F A R+G+ P FQ I+ K + P + ++A N R+RS+KLRA Sbjct: 239 RIVKAFLAERAGRTPGGSRHAPPVQAGAQPSFQLISNKAIAPGEAELAANPRARSSKLRA 298 Query: 314 GMRTVERSIEDDS 326 +RT E + Sbjct: 299 AVRTEAPVWEAAA 311 >gi|227877318|ref|ZP_03995391.1| S-adenosyl-methyltransferase [Lactobacillus crispatus JV-V01] gi|256842880|ref|ZP_05548368.1| methylase MraW [Lactobacillus crispatus 125-2-CHN] gi|256848746|ref|ZP_05554180.1| cell division protein MraW [Lactobacillus crispatus MV-1A-US] gi|262045846|ref|ZP_06018810.1| methylase MraW [Lactobacillus crispatus MV-3A-US] gi|312977602|ref|ZP_07789349.1| S-adenosyl-methyltransferase MraW [Lactobacillus crispatus CTV-05] gi|227863174|gb|EEJ70620.1| S-adenosyl-methyltransferase [Lactobacillus crispatus JV-V01] gi|256614300|gb|EEU19501.1| methylase MraW [Lactobacillus crispatus 125-2-CHN] gi|256714285|gb|EEU29272.1| cell division protein MraW [Lactobacillus crispatus MV-1A-US] gi|260573805|gb|EEX30361.1| methylase MraW [Lactobacillus crispatus MV-3A-US] gi|310895341|gb|EFQ44408.1| S-adenosyl-methyltransferase MraW [Lactobacillus crispatus CTV-05] Length = 315 Score = 367 bits (943), Expect = 1e-99, Method: Composition-based stats. Identities = 105/311 (33%), Positives = 162/311 (52%), Gaps = 13/311 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76 H VLL + I L P G + +DATFG GG+++ ++ D+D +A+ + Sbjct: 4 KHTSVLLHETIDNLKPKNGGLYVDATFGGGGHAKYLLSKIDTGTLVGFDQDEYAIKSAKL 63 Query: 77 TMR-----DYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSF 127 D + + L FS L+ + G+DG+ +DLGVSS Q D DRGFS+ Sbjct: 64 NFANLLQLDSEPRLELVHDNFSNLEKDLVKLGYSDGIDGIYYDLGVSSPQFDQADRGFSY 123 Query: 128 QKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + LDMRM S + A +VN + K+L IL G+EK + +IAH IV+RR+ P Sbjct: 124 RYDARLDMRMDQSQDLDAYQLVNTLSQKELADILYQYGDEKFSRQIAHRIVERRREKPIA 183 Query: 187 TTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT +L +I+ + ++ HPA +SFQALR+ VN+E++ L L A K L+ GG + Sbjct: 184 TTFELVDVIKDAIPAYARRTGGHPAKKSFQALRVAVNHELDVLQASLEEAIKILRPGGRI 243 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V++F S ED++VK+ F S + + + + K +V + ++ N R Sbjct: 244 SVITFQSHEDKIVKRIFKKYSEVEVPRGMPFIPDGMKPTLRLVNHKPIVASTSELENNNR 303 Query: 306 SRSAKLRAGMR 316 S SAKLR + Sbjct: 304 SHSAKLRVAEK 314 >gi|323692152|ref|ZP_08106395.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Clostridium symbiosum WAL-14673] gi|323503726|gb|EGB19545.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Clostridium symbiosum WAL-14673] Length = 314 Score = 367 bits (943), Expect = 1e-99, Method: Composition-based stats. Identities = 98/312 (31%), Positives = 174/312 (55%), Gaps = 10/312 (3%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSC 73 I H VLL++ I L+ P + +D T G GG++ C+ I +D+D A++ Sbjct: 2 IFGHKSVLLDETIESLDIKPDGIYVDGTLGGGGHASEVCRRLGDKGRFIGIDQDADAIAA 61 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 E ++++ ++ ++ ++ + + + + + G VDG+ DLGVSS Q+D +RGF++++ Sbjct: 62 ASERLKEFGDKVTIVRSNYENVDEVLKELGISQVDGIYLDLGVSSYQLDTAERGFTYRED 121 Query: 131 -GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM + ++A D+VN + +L I+ GE++ A IA IV+ RQ +TT Sbjct: 122 DAPLDMRMDQRNEMTAKDIVNTYSESELFHIIKNYGEDRFAKNIAKHIVRARQEKEIETT 181 Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L +I+ + + HPA R+FQA+RI +N E+E L + + L GG L + Sbjct: 182 GELIEIIKAAIPAKVRATGGHPAKRTFQAIRIELNKELEVLEKSIDKMTDLLAPGGRLSI 241 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 ++FHSLEDR+VK F + + + +T+K ++P++E+++ N+RS Sbjct: 242 ITFHSLEDRIVKNRFRINENPCTCPPDFPVCMCGKKSKGRVVTRKPILPSEEELSENKRS 301 Query: 307 RSAKLRAGMRTV 318 +SAKLR ++ Sbjct: 302 KSAKLRVFEKSR 313 >gi|323171245|gb|EFZ56893.1| S-adenosyl-methyltransferase MraW [Escherichia coli LT-68] Length = 313 Score = 367 bits (943), Expect = 1e-99, Method: Composition-based stats. Identities = 117/312 (37%), Positives = 179/312 (57%), Gaps = 19/312 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ + Sbjct: 6 KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +FS+ FS L +YV ++ +DG++ DLGVSS Q+D +RGFSF + G Sbjct: 66 TI---DDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDG 122 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + G SA++ + A D+ +L GEE+ A RIA AIV+R + P T++ Sbjct: 123 PLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKE 182 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L ++SF Sbjct: 183 LAEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISF 241 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305 HSLEDR+VK+F S + + +++ K ++P +E++A N R Sbjct: 242 HSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGK--LMPGEEEMAENPR 299 Query: 306 SRSAKLRAGMRT 317 +RS+ LR RT Sbjct: 300 ARSSVLRIAERT 311 >gi|312898967|ref|ZP_07758355.1| S-adenosyl-methyltransferase MraW [Megasphaera micronuciformis F0359] gi|310620129|gb|EFQ03701.1| S-adenosyl-methyltransferase MraW [Megasphaera micronuciformis F0359] Length = 310 Score = 367 bits (943), Expect = 1e-99, Method: Composition-based stats. Identities = 118/307 (38%), Positives = 173/307 (56%), Gaps = 8/307 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQ 75 HV VL E+ I + P + +D T G GG+SR+ +I LD+D A+ Sbjct: 4 HHVSVLREETIHAVLGDPAGIYVDCTLGGGGHSRALADLLVKDGLIIGLDQDEDAIRAAT 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E M+D +F+ Q F L + + D VDG++FDLGVSS Q+D +RGFS+Q GP Sbjct: 64 ERMQDAPCRFTAVQRNFRYLGEVLDDLNIPTVDGIMFDLGVSSYQLDNPERGFSYQHDGP 123 Query: 133 LDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM G SA DV+N + DL RI+ GEE+ A RIA IVK R+ PF+ T++L Sbjct: 124 LDMRMDRHGKKSAYDVINAYDEADLYRIIKDYGEERWAKRIASFIVKARREKPFERTEEL 183 Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I++ + ++ + HPA R+FQA+RI VN+E++ L A LK GG + +++F Sbjct: 184 VRVIKQAIPAGARKDGPHPAKRTFQAVRIEVNDELKILQDTFEIAANRLKPGGHIGIITF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDR+ K+ + + H+ H + K + P++E++ N R+RSAK Sbjct: 244 HSLEDRIAKQTLRKLATGCICPPHIPVCTCHHEAILKVKGKGIGPSKEELELNPRARSAK 303 Query: 311 LRAGMRT 317 LR G R Sbjct: 304 LRVGTRI 310 >gi|319899165|ref|YP_004159258.1| S-adenosyl-methyltransferase [Bartonella clarridgeiae 73] gi|319403129|emb|CBI76687.1| S-adenosyl-methyltransferase [Bartonella clarridgeiae 73] Length = 346 Score = 367 bits (943), Expect = 1e-99, Method: Composition-based stats. Identities = 162/325 (49%), Positives = 212/325 (65%), Gaps = 3/325 (0%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQE 76 + H+PVLL+ V+A + P G ++D TFGAGGYSR+ G+ VIALDRDP A+ GQ Sbjct: 22 VERHIPVLLQSVLAGIAPLAGARVIDGTFGAGGYSRALLNAGAEVIALDRDPLAIREGQA 81 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + + + L QA FSQL V + VD V+ D+GVSSMQ+D +RGFSFQK GPLDMR Sbjct: 82 LVDQFFPRLHLIQAKFSQLDRIV-EGEVDAVILDIGVSSMQLDEAERGFSFQKDGPLDMR 140 Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 M+ +G +A+DVVN V DL ++ LGEE+ A RIA I KRR PF T DL+ I+ Sbjct: 141 MAQTGFTAADVVNYLKVDDLAQLFKTLGEERYAGRIARMIDKRRYVRPFLRTIDLAHAIE 200 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 + + IHPATR FQALRI+VNNE+ ELA GL +AE+ LKA G L VVSFHSLEDR Sbjct: 201 TLIGRKPGDHIHPATRVFQALRIYVNNELGELACGLFAAERVLKAEGRLAVVSFHSLEDR 260 Query: 257 LVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 +VKKF ++RSG R++ + PA F + K V TQE++ N R+RSA+LR G+R Sbjct: 261 MVKKFLSARSGYKKGSRYLPEIKSVPATFVPLFKGVKTATQEELQQNPRARSARLRIGVR 320 Query: 317 TVERSIEDDSFVHLPRLPTLSQFRG 341 T E +I D + L L +++F G Sbjct: 321 TQEAAIAAD--MKLFGLAEIARFEG 343 >gi|229586901|ref|YP_002845402.1| S-adenosyl-methyltransferase MraW [Rickettsia africae ESF-5] gi|259495903|sp|C3PNZ9|RSMH_RICAE RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|228021951|gb|ACP53659.1| S-adenosyl-methyltransferase MraW [Rickettsia africae ESF-5] Length = 307 Score = 367 bits (943), Expect = 1e-99, Method: Composition-based stats. Identities = 129/307 (42%), Positives = 185/307 (60%), Gaps = 5/307 (1%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQ 75 I HV V+L +++ L+P G+ LD TFGAGGYS++ + V ALDRDP + + Sbjct: 2 IQSHVSVMLNEMLEALSPKAGESYLDCTFGAGGYSKAILESCNCYVTALDRDPNVIKRAE 61 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 E + Y E+F + F+ + +K DG+V DLGVSSMQ+D DRGFSF +GPLDM Sbjct: 62 EIQQSYGERFDFVETNFADSFAKLKEKKFDGIVLDLGVSSMQLDIADRGFSFLHNGPLDM 121 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RMS G+SA + VN A K+L ++ G+E + RIA IV+ R++A +T L+ ++ Sbjct: 122 RMSGQGLSAEEFVNAAEEKELADVIYKYGDESFSRRIAKRIVEYRKTARIDSTSKLAEIV 181 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + ++ F K +I PAT++FQA+RI+VN+E+ EL Q L + + LK G L+VVSFHSLED Sbjct: 182 RSSIGFRK-GKIDPATKTFQAIRIYVNDELGELEQFLVNVKNILKKDGRLVVVSFHSLED 240 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNA---HPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 R+VK FF S K + + + IT K + P+ ++V N R+RSAKLR Sbjct: 241 RIVKNFFKENSEKPVVRSKYAKDDMTIDPNKWLKIITNKALAPSDKEVGLNIRARSAKLR 300 Query: 313 AGMRTVE 319 A E Sbjct: 301 AAKAIYE 307 >gi|281491359|ref|YP_003353339.1| S-adenosyl-methyltransferase MraW [Lactococcus lactis subsp. lactis KF147] gi|281375100|gb|ADA64618.1| S-adenosyl-methyltransferase MraW [Lactococcus lactis subsp. lactis KF147] Length = 317 Score = 367 bits (943), Expect = 1e-99, Method: Composition-based stats. Identities = 102/307 (33%), Positives = 165/307 (53%), Gaps = 9/307 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76 H VLL + + +L P + +DAT G G+S ++ + D+D A + Sbjct: 8 KHDTVLLHETVDMLEVKPNGIYVDATLGGAGHSEYLLSKLTDGHLYSFDQDETAHENAKV 67 Query: 77 TMRD--YKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + +++ +L ++ F L+ + + GV DG+++DLGVSS Q D RGFS++K Sbjct: 68 RLSEQLAEDKVTLIKSNFRYLKSALAELGVTKIDGILYDLGVSSPQFDDSQRGFSYKKEA 127 Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM + +SA +VVN+ + L RI GE+K + +IA I + R+ P +TT + Sbjct: 128 RLDMRMDQNQTLSAYEVVNEYPYEALVRIFFRYGEDKFSKQIARKIEQARKIKPIETTIE 187 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ LI+ + + + HPA R FQA+RI VN+E+ + + A LK G + V++ Sbjct: 188 LADLIKSALPQKELKKKGHPAKRIFQAIRIEVNDELGAAEESIEQAIDLLKVDGRISVIT 247 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K F S + + A + I +K V+ ++E++ FN R+ SA Sbjct: 248 FHSLEDRLTKTIFKEYSTVNVPKGLPMLPKDMEAKLKLINRKPVLASEEELEFNNRAHSA 307 Query: 310 KLRAGMR 316 KLR + Sbjct: 308 KLRVAQK 314 >gi|84501746|ref|ZP_00999918.1| S-adenosyl-methyltransferase MraW [Oceanicola batsensis HTCC2597] gi|84390367|gb|EAQ02926.1| S-adenosyl-methyltransferase MraW [Oceanicola batsensis HTCC2597] Length = 331 Score = 367 bits (943), Expect = 1e-99, Method: Composition-based stats. Identities = 138/326 (42%), Positives = 195/326 (59%), Gaps = 5/326 (1%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRD 67 M+++ H+PVLL +I + P LD TFGAGGY+R + G+ VI +DRD Sbjct: 1 MAASAPSPDAPHIPVLLRPLIDRVAPVA-GTWLDGTFGAGGYARGLLEAGAEKVIGVDRD 59 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 P A+ + D + + Q F++L + +DGVV DLGVSSMQ+D +RGFSF Sbjct: 60 PLALEMAGGWIGDCAGKLEIRQGNFAELDRIAGEM-LDGVVLDLGVSSMQLDLAERGFSF 118 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 K GPLDMRMS G SA+D+VN DL ++ + GEE+ + RIA AIV+ R AP T Sbjct: 119 MKDGPLDMRMSQEGPSAADLVNTMAEGDLADVIYLYGEERASRRIARAIVRERAEAPIAT 178 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T L+ +++ + +K + HPATR+FQALRI VN+E LA+GL +AE+AL+ GG L V Sbjct: 179 TLRLAGIVEGCLPRAKPGQSHPATRTFQALRIAVNDEYGALAEGLMAAERALRPGGQLAV 238 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPS-NAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+FHS+EDR+VK+F RSG+ P F +T+K V P ++++ N R+ Sbjct: 239 VTFHSVEDRMVKRFLQLRSGRAGRANRFAPEAPEDKPRFTIVTRKAVGPDEDELEVNPRA 298 Query: 307 RSAKLRAGMRTVERSIE-DDSFVHLP 331 RSA+LR RT E + D + +P Sbjct: 299 RSARLRVARRTEEPAEPIDRKALGMP 324 >gi|15672847|ref|NP_267021.1| hypothetical protein L87561 [Lactococcus lactis subsp. lactis Il1403] gi|20139138|sp|Q9CH73|RSMH_LACLA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|12723794|gb|AAK04963.1|AE006321_1 hypothetical protein L87561 [Lactococcus lactis subsp. lactis Il1403] Length = 317 Score = 367 bits (943), Expect = 1e-99, Method: Composition-based stats. Identities = 102/307 (33%), Positives = 164/307 (53%), Gaps = 9/307 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76 H VLL + + +L P + +DAT G G+S ++ + D+D A + Sbjct: 8 KHDTVLLHETVDMLEVKPNGIYVDATLGGAGHSEYLLSKLTNGHLYSFDQDETAHENAKV 67 Query: 77 TMRD--YKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + +++ +L ++ F L+ + + GV DG+++DLGVSS Q D RGFS++K Sbjct: 68 RLSEQLAEDKVTLIKSNFRYLKSALAELGVTKIDGILYDLGVSSPQFDDSQRGFSYKKEA 127 Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM + +SA +VVN + L RI GE+K + +IA I + R+ P +TT + Sbjct: 128 RLDMRMDQNQTLSAYEVVNDYPYEALVRIFFRYGEDKFSKQIARKIEQARKIKPIETTIE 187 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ LI+ + + + HPA R FQA+RI VN+E+ + + A LK G + V++ Sbjct: 188 LADLIKSALPQKELKKKGHPAKRIFQAIRIEVNDELGAAEESIEQAIDLLKVDGRISVIT 247 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K F S + + A + I +K V+ ++E++ FN R+ SA Sbjct: 248 FHSLEDRLTKTIFKEYSTVNVPKGLPMLPKDMEAKLKLINRKPVLASEEELEFNNRAHSA 307 Query: 310 KLRAGMR 316 KLR + Sbjct: 308 KLRVAQK 314 >gi|254564005|ref|YP_003071100.1| S-adenosyl-dependent methyltransferase [Methylobacterium extorquens DM4] gi|254271283|emb|CAX27295.1| S-adenosyl-dependent methyltransferase [Methylobacterium extorquens DM4] Length = 351 Score = 367 bits (943), Expect = 1e-99, Method: Composition-based stats. Identities = 148/326 (45%), Positives = 198/326 (60%), Gaps = 8/326 (2%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQ 75 HVPVLL +V+A L+ + +D TFGAGGY+R+ + G VIA+DRDP A+ G Sbjct: 18 ARHVPVLLAEVLAALSLDRPGLAVDGTFGAGGYTRALLEAGPEVRVIAIDRDPTAIRGGA 77 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + + L Q F L + D+ D VV D+GVSSMQID RGFSF++ GP Sbjct: 78 DLVTASGGRLRLVQGRFGDLDTLIADQDEAQADWVVLDIGVSSMQIDEAQRGFSFRQDGP 137 Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 LDMRM G SA+D+VN L IL GEE+++ +A AIV+ R+ AP +TT L+ Sbjct: 138 LDMRMGGEGPSAADLVNGEEETTLADILYHFGEERRSRAVARAIVEARRRAPIETTAQLA 197 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 L+ V + IHPATRSFQ LRI VN+E+ EL +GL +AE+ LK GG L VV+FHS Sbjct: 198 DLVAGVVRPEPGSPIHPATRSFQGLRIAVNDELGELVRGLHAAERVLKPGGRLAVVTFHS 257 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRSAK 310 LEDR+VK+FF++RSG+ +P PA F+ +TK V+P++ + N RSRSAK Sbjct: 258 LEDRIVKQFFSARSGRAAQASRHVPGVERPAPKSFKLVTKGPVLPSEAETDVNPRSRSAK 317 Query: 311 LRAGMRTVERSIEDDSFVH-LPRLPT 335 LRAG RT + S + L LP Sbjct: 318 LRAGERTDAPAPPPLSAIETLASLPA 343 >gi|313673691|ref|YP_004051802.1| s-adenosyl-methyltransferase mraw [Calditerrivibrio nitroreducens DSM 19672] gi|312940447|gb|ADR19639.1| S-adenosyl-methyltransferase MraW [Calditerrivibrio nitroreducens DSM 19672] Length = 312 Score = 367 bits (943), Expect = 1e-99, Method: Composition-based stats. Identities = 120/311 (38%), Positives = 171/311 (54%), Gaps = 8/311 (2%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAV 71 H H+PVLLE+ + LN G V +D T G GG+S + + +I LDRDP A Sbjct: 3 HKVEMAHIPVLLEEALHYLNVISGGVYVDCTGGGGGHSAAILEKINEGRLIILDRDPDAC 62 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV--DGVVFDLGVSSMQIDCGDRGFSFQK 129 + + FS ++ + G+ +G++ D GVSS QI RGFSF+ Sbjct: 63 ERLFIRFKGV-PNVDIINDNFSNIEKILDSMGLKANGILADFGVSSFQISNTGRGFSFRY 121 Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM + +SA DVVN + + L I+ GE+ A RIA+ IVK R TT Sbjct: 122 DEPLDMRMDKKTDLSAYDVVNNLSQETLENIIKKYGEDPFAKRIAYVIVKYRNLKKITTT 181 Query: 189 QDLSSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 ++L+ +I V + + IHPATR+FQA+RIFVN E+E + L+S E L + G + Sbjct: 182 KELAEIIANAVPVKFHKKGIHPATRTFQAIRIFVNKELEAIESLLKSLENILVSKGRGVF 241 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 +SFHSLEDR+VK F + + + I + F+ +TKK V+P++++V N S Sbjct: 242 ISFHSLEDRMVKDFLNYYAKQCICPPGQPICTCGKKQTFKVLTKKPVLPSKDEVIKNPYS 301 Query: 307 RSAKLRAGMRT 317 RSAKLRAG R Sbjct: 302 RSAKLRAGERV 312 >gi|218780979|ref|YP_002432297.1| S-adenosyl-methyltransferase MraW [Desulfatibacillum alkenivorans AK-01] gi|263447357|sp|B8FBS6|RSMH_DESAA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|218762363|gb|ACL04829.1| S-adenosyl-methyltransferase MraW [Desulfatibacillum alkenivorans AK-01] Length = 326 Score = 367 bits (943), Expect = 1e-99, Method: Composition-based stats. Identities = 127/309 (41%), Positives = 178/309 (57%), Gaps = 10/309 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 HV V+ ++V++LL+PAPG V++D TFG GG++R+ + +I D D AV+ Q Sbjct: 4 HHVSVMKQEVLSLLSPAPGHVVVDGTFGGGGHARAILERILPDGLLIGTDLDEDAVTNAQ 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 D + F +F FS ++ + G+ +G+V DLGVS ++ RGFSFQ+ P Sbjct: 64 ACFADVQNNFRIFHDNFSNIRAVLDQCGLAGANGIVLDLGVSLHLLEKSGRGFSFQREEP 123 Query: 133 LDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM SG A DVVN + +L RI GEE+QA RIA IV+RR+ P T+ Sbjct: 124 LDMRMDGSGGGPKAMDVVNAYSQDELARIFLEYGEERQAKRIARRIVQRREDEPITTSGR 183 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ ++ V K RIHPATR FQALRI VNNE+ L + L + L GG L ++SF Sbjct: 184 LADIVASAVK-GKPGRIHPATRVFQALRIHVNNELAHLEKFLETCLDCLLPGGRLCIISF 242 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK+ FA+ + + + + +TKKVV P+Q +V N SRSA Sbjct: 243 HSLEDRIVKRRFAALAQGCTCPPDFPVCICGNQPKVKILTKKVVKPSQAEVEKNPMSRSA 302 Query: 310 KLRAGMRTV 318 K+RA + Sbjct: 303 KIRAMEKLA 311 >gi|110804146|ref|YP_687666.1| S-adenosyl-methyltransferase MraW [Shigella flexneri 5 str. 8401] gi|123147294|sp|Q0T8B5|RSMH_SHIF8 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|110613694|gb|ABF02361.1| putative apolipoprotein [Shigella flexneri 5 str. 8401] Length = 313 Score = 367 bits (942), Expect = 1e-99, Method: Composition-based stats. Identities = 117/312 (37%), Positives = 178/312 (57%), Gaps = 19/312 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ + Sbjct: 6 KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +FS+ FS L +YV ++ +DG++ DLGVSS Q+D +RGFSF + G Sbjct: 66 TI---DDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDG 122 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + G SA++ + A D+ +L GEE A RIA AIV+R + P T++ Sbjct: 123 PLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEEHFAKRIARAIVERNREQPMTRTKE 182 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L ++SF Sbjct: 183 LAEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISF 241 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305 HSLEDR+VK+F S + + +++ K ++P +++VA N R Sbjct: 242 HSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGK--LMPGEDEVAENPR 299 Query: 306 SRSAKLRAGMRT 317 +RS+ LR RT Sbjct: 300 ARSSVLRIAERT 311 >gi|322513875|ref|ZP_08066954.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Actinobacillus ureae ATCC 25976] gi|322120274|gb|EFX92221.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Actinobacillus ureae ATCC 25976] Length = 313 Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats. Identities = 116/316 (36%), Positives = 172/316 (54%), Gaps = 16/316 (5%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69 ++ T H+ VLL + + L P + +D TFG GG+SR +IA DRDP Sbjct: 1 MNDTAHKHITVLLHEAVDGLAIKPNGIYIDGTFGRGGHSRLILSKLSERGRLIATDRDPS 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGF 125 A++ +F + FS + + G +DG++ DLGVSS Q+D +RGF Sbjct: 61 AIAEANTI---TDARFQIVHTAFSAIPEVCEQLGLTGKIDGILLDLGVSSPQLDDAERGF 117 Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA- 183 SF + G LDMRM + G+SA++ + Q +V DL +L GEE+ A RIA A+ +S Sbjct: 118 SFMRDGSLDMRMDTTKGLSAAEWLAQVSVDDLAWVLKTFGEERFAKRIAQAVFSYNKSTT 177 Query: 184 -PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 T L+ +I V F K+ HPATRSFQA+RIF+N+E++EL + L+SA L Sbjct: 178 DKISRTLQLAQIIADAVPF-KDKHKHPATRSFQAIRIFINSELDELEKALQSALSVLAPE 236 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300 G L ++SFHSLEDR+VK+F S V ++ S + + K ++P++ ++ Sbjct: 237 GRLSIISFHSLEDRMVKQFMKKNSKGMDVPKGLPILESELNKNIPLKTIGKAIMPSEAEI 296 Query: 301 AFNRRSRSAKLRAGMR 316 N RSRSA LR + Sbjct: 297 EANPRSRSAVLRIAEK 312 >gi|320084363|emb|CBY94156.1| putative S-adenosyl methionine adenyltransferase [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 346 Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats. Identities = 120/312 (38%), Positives = 181/312 (58%), Gaps = 19/312 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ Q Sbjct: 39 KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAQ 98 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +FS+ FS L DYV ++ +DG++ DLGVSS Q+D +RGFSF + G Sbjct: 99 TI---NDPRFSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFMRDG 155 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + G SA++ + A D+ +L GEE+ A RIA AIV+R + P T++ Sbjct: 156 PLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIARAIVERNREQPMTRTKE 215 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L ++SF Sbjct: 216 LAEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSIISF 274 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305 HSLEDR+VK+F +S + + A +++ K ++P +++VA N R Sbjct: 275 HSLEDRIVKRFMREQSRGPQVPAGLPMTEAQLKKLGGRELRALGK--LMPGEKEVAENPR 332 Query: 306 SRSAKLRAGMRT 317 +RS+ LR RT Sbjct: 333 ARSSVLRIAERT 344 >gi|85703617|ref|ZP_01034721.1| S-adenosyl-methyltransferase MraW [Roseovarius sp. 217] gi|85672545|gb|EAQ27402.1| S-adenosyl-methyltransferase MraW [Roseovarius sp. 217] Length = 330 Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats. Identities = 139/321 (43%), Positives = 201/321 (62%), Gaps = 6/321 (1%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCG 74 H+PVLL ++A + P V LD T GAGGY+R + G++ V+ +DRDP A+ Sbjct: 9 NTAPHIPVLLRPLLAAVAPVR-GVWLDGTLGAGGYARGLLEAGADQVVGVDRDPLALEMA 67 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 +E +Y ++ L Q F+Q+ DY D +DGVV DLGVSSMQ+D +RGFSF + GPLD Sbjct: 68 REWGAEYGDRLRLVQGNFAQMDDYAAD--LDGVVLDLGVSSMQLDRAERGFSFMRDGPLD 125 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRMS G +A+D+VN + +L IL + GEE+ + RIA AIVK R+ P ++T L+ + Sbjct: 126 MRMSQDGPTAADLVNTTDEAELADILYLYGEERASRRIARAIVKAREVTPIESTLQLTGI 185 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 +++ + SK + H ATRSFQA+RI VN+E L +GL +AE+AL+ GG L VV+FHS+E Sbjct: 186 VERCLPRSKPGQAHVATRSFQAIRIAVNDEYGSLIEGLEAAERALRPGGQLAVVTFHSIE 245 Query: 255 DRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 DR+VK+F RS G RH F ++K + P +++A N R+RSA+LR Sbjct: 246 DRMVKRFMQLRSGGGGTGSRHAPEIEREAPQFSLKSRKAIGPDDDELAVNPRARSARLRV 305 Query: 314 GMRTVERS-IEDDSFVHLPRL 333 +RT R+ + S + +P L Sbjct: 306 AVRTDVRAGRTERSQLGMPML 326 >gi|306843215|ref|ZP_07475826.1| S-adenosyl-methyltransferase MraW [Brucella sp. BO2] gi|306286580|gb|EFM58157.1| S-adenosyl-methyltransferase MraW [Brucella sp. BO2] Length = 321 Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats. Identities = 160/318 (50%), Positives = 210/318 (66%), Gaps = 6/318 (1%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSL 87 +I L PAPG VI+D TFGAGGY+R + G++VIA+DRDP A+ G+ +++ + +L Sbjct: 1 MIDALKPAPGAVIVDGTFGAGGYTRRILETGADVIAIDRDPTAIEAGRAMEKEFPGRLNL 60 Query: 88 FQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI 142 ++ FS L + V VDGVV D+GVSSMQID +RGFSFQK GPLDMRMS G Sbjct: 61 VESRFSALDEAVARMSGAGKKVDGVVLDIGVSSMQIDEAERGFSFQKDGPLDMRMSSRGP 120 Query: 143 SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS 202 SA+D VN+ DL RI LGEE+ A RIA I KRR + PF T DL++ I+ V + Sbjct: 121 SAADAVNRLKTGDLARIFNFLGEERHAGRIARMIEKRRAAKPFTRTLDLANAIETLVGRN 180 Query: 203 KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF 262 +RIHPATR FQALR++VN+E+ ELA+ L +AE+ +K GG L+VV+FHSLEDR+VK+FF Sbjct: 181 PKDRIHPATRVFQALRVYVNDELGELARALLAAERIIKPGGRLVVVTFHSLEDRMVKRFF 240 Query: 263 ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSI 322 A R+G RHM ++ F K V PT E+ N R+RSAKLRAG+RT + Sbjct: 241 ADRAGGSAGSRHMPETHMRLPSFTPAVKGAVGPTPEEEERNPRARSAKLRAGIRTENPPL 300 Query: 323 EDD-SFVHLPRLPTLSQF 339 EDD S LP+LP ++ Sbjct: 301 EDDLSLFGLPKLPETNEL 318 >gi|220904376|ref|YP_002479688.1| S-adenosyl-methyltransferase MraW [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|263447319|sp|B8IZT3|RSMH_DESDA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|219868675|gb|ACL49010.1| S-adenosyl-methyltransferase MraW [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 327 Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats. Identities = 120/327 (36%), Positives = 170/327 (51%), Gaps = 12/327 (3%) Query: 6 CKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIA 63 +TMS T HV VL + +A L+P G LD T G GG++ + + Sbjct: 2 IQTMSDTTEPT--RHVSVLPVETLAALDPRAGGRYLDGTLGMGGHASAILSSAPGIELCG 59 Query: 64 LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDC 120 LDRD A++ + + + + LF +S + + + G VDG + D+GVSS+Q+D Sbjct: 60 LDRDEEALALAGQRLSSFGGRAHLFHCRYSDFAEALNELGWDKVDGALLDIGVSSLQLDE 119 Query: 121 GDRGFSFQKSGPLDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178 +RGFSF GPLDMRM + SA VN+ + L + LGEE QA RIA AIV Sbjct: 120 AERGFSFYGDGPLDMRMDQNSAQPSAWHWVNRESFDKLKDCIATLGEEPQAGRIARAIVD 179 Query: 179 RRQSAPFQTTQDLSSLIQKTVYFSKNNR--IHPATRSFQALRIFVNNEIEELAQGLRSAE 236 RQ TT L++L+++ + + HPATR+FQALR+ VN+E+ EL + L Sbjct: 180 ARQKNTIDTTGQLAALVERAYPAAWRAKARRHPATRTFQALRMAVNDELGELRRFLDQIL 239 Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVP 295 L GG L V++FHSLEDR+VK+ RH+ H + + KK V Sbjct: 240 TWLPIGGRLAVITFHSLEDRMVKQAMRHWVEGCRCPRHIPRCICGHQPEVRILHKKPVQA 299 Query: 296 TQEDVAFNRRSRSAKLRAGMRTVERSI 322 E++A N R+ SAKLRA + E S Sbjct: 300 GPEELAANSRAGSAKLRAVEKIAEDSG 326 >gi|149201994|ref|ZP_01878968.1| S-adenosyl-methyltransferase MraW [Roseovarius sp. TM1035] gi|149145042|gb|EDM33071.1| S-adenosyl-methyltransferase MraW [Roseovarius sp. TM1035] Length = 330 Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats. Identities = 148/319 (46%), Positives = 197/319 (61%), Gaps = 6/319 (1%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQE 76 H+PVLL +IA + P V LD T GAGGY+R+ G++ VI +DRDP A Q Sbjct: 11 APHIPVLLRPLIAAVAPVQ-GVWLDGTLGAGGYARALLDAGADQVIGVDRDPLAHDMAQG 69 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 +Y ++ L F+Q+ DY D +DGVV DLGVSSMQ+D +RGFSF K GPLDMR Sbjct: 70 WGAEYGDRLRLVLGNFAQMDDYATD--LDGVVLDLGVSSMQLDLAERGFSFMKDGPLDMR 127 Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 MS G SA+D+VN A DL IL + GEE+ + RIA AIVK R AP +TT L+ LI+ Sbjct: 128 MSQEGPSAADLVNTAEESDLADILYLYGEERASRRIARAIVKARTEAPIETTLHLAGLIE 187 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 + + SK + H ATRSFQA+RI VN+E L GL +AE+ALK GG L VV+FHS+EDR Sbjct: 188 RCLPRSKPGQAHAATRSFQAIRIAVNDEYGALIAGLEAAERALKEGGQLAVVTFHSIEDR 247 Query: 257 LVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 +VK+F +RS G RH F ++K + P E++A N R+RSA+LR Sbjct: 248 IVKRFLTARSGGGGTGSRHAPEITREEPQFTLKSRKAIGPDDEELAVNPRARSARLRVAT 307 Query: 316 RTVERSIEDD-SFVHLPRL 333 RT + + + + + +P L Sbjct: 308 RTDAPAGQSERAALGVPML 326 >gi|161504759|ref|YP_001571871.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|262826357|sp|A9MQD1|RSMH_SALAR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|160866106|gb|ABX22729.1| hypothetical protein SARI_02882 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 313 Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats. Identities = 120/312 (38%), Positives = 180/312 (57%), Gaps = 19/312 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ Q Sbjct: 6 KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAQ 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +FS+ FS L DYV ++ +DG++ DLGVSS Q+D +RGFSF + G Sbjct: 66 ---AINDPRFSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFMRDG 122 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + G SA++ + A D+ +L GEE+ A RIA AIV+R + P T++ Sbjct: 123 PLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIARAIVERNREQPMTRTKE 182 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L ++SF Sbjct: 183 LAEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSIISF 241 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305 HSLEDR+VK+F +S + + A + + K ++P +++VA N R Sbjct: 242 HSLEDRIVKRFMREQSRGPQVPAGLPMTEAQLKKLGGRELRVLGK--LMPGEKEVAENPR 299 Query: 306 SRSAKLRAGMRT 317 +RS+ LR RT Sbjct: 300 ARSSVLRIAERT 311 >gi|297616973|ref|YP_003702132.1| S-adenosyl-methyltransferase MraW [Syntrophothermus lipocalidus DSM 12680] gi|297144810|gb|ADI01567.1| S-adenosyl-methyltransferase MraW [Syntrophothermus lipocalidus DSM 12680] Length = 307 Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats. Identities = 118/307 (38%), Positives = 174/307 (56%), Gaps = 8/307 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 HVPVLLE+ +++L P V +D T G GG+ + +I +D+D A+ + Sbjct: 1 MHVPVLLEEAVSMLALQPDGVYVDCTVGGGGHLACLVQKLGEKATIIGIDKDAKALEEAR 60 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + + + L F +LQ + G+ G+V DLGVSS Q+D RGFS+Q+ GP Sbjct: 61 KKLANVSSKLILIHGDFRRLQVILKMHGISEIHGIVLDLGVSSFQLDDASRGFSYQEEGP 120 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ +SA +VN+ + + L I+ LGEE+ A RIA IV+ RQ P TT +L Sbjct: 121 LDMRMNTDQQLSAWHLVNEWSEERLALIIRELGEERYARRIAREIVRERQQRPINTTFEL 180 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I++ V HPA R+FQALRI VN E+E L + L A + L + G + V++FH Sbjct: 181 VEVIKRAVPAQAKKDKHPARRTFQALRIAVNEELEALEEVLPQAVEVLASEGRIAVITFH 240 Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK FF S + + + H A + +TK+ + PT+ ++A N RSRSAK Sbjct: 241 SLEDRIVKTFFKRESLGCLCPSDQPVCTCNHRARLKIVTKRPITPTEAELARNPRSRSAK 300 Query: 311 LRAGMRT 317 LR + Sbjct: 301 LRIAEKI 307 >gi|167772169|ref|ZP_02444222.1| hypothetical protein ANACOL_03544 [Anaerotruncus colihominis DSM 17241] gi|167665967|gb|EDS10097.1| hypothetical protein ANACOL_03544 [Anaerotruncus colihominis DSM 17241] Length = 311 Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats. Identities = 114/311 (36%), Positives = 174/311 (55%), Gaps = 8/311 (2%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFA 70 + HVPVLL+ + LN P + +D T G G+SR+ + G +IALD+DP A Sbjct: 1 MDELHFSHVPVLLDACLEGLNIRPDGIYVDGTAGGAGHSRAIAERLDGGRLIALDKDPDA 60 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSF 127 V+ + + ++ Q+ FS+L + G VDG++ DLGVSS Q+D +RGFS+ Sbjct: 61 VAVASSRLAPFGC-ATVVQSDFSELCTVLDKLGIEAVDGILLDLGVSSYQLDTPERGFSY 119 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 PLDMRM+ +G+SA DVVN + KDL R+ GEEK A IA I+K R P T Sbjct: 120 AHDAPLDMRMTKTGLSARDVVNTYSFKDLCRVFRDYGEEKFAPAIAKNILKSRTQRPIAT 179 Query: 188 TQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T +L+++I ++ + +PA R FQA+RI VN E+ L+ L A + L+ GG + Sbjct: 180 TAELAAIIGASIPARARREGGNPAKRVFQAIRIEVNGELSSLSVFLGEAFERLRIGGRMA 239 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 +++FHSLEDR+VK+ FA+ + + + + +K + + ++A N R Sbjct: 240 IITFHSLEDRMVKQRFAALCRGCTCPPDFPVCICGNQPRGRLLNRKPIEAGERELAANSR 299 Query: 306 SRSAKLRAGMR 316 S+SAKLR + Sbjct: 300 SKSAKLRVIEK 310 >gi|309388985|gb|ADO76865.1| S-adenosyl-methyltransferase MraW [Halanaerobium praevalens DSM 2228] Length = 310 Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats. Identities = 113/308 (36%), Positives = 164/308 (53%), Gaps = 10/308 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H VLL++ I L + LD T G G+S +IALDRD A+ + Sbjct: 4 KHQAVLLKEAIDYLEIKKDGIYLDGTLGRAGHSSEILHNLSEIGKLIALDRDTAAIKAVE 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 K L + F L + K VDG++FDLGVSS Q+D +RGFS+QK+GP Sbjct: 64 SKFSKSKS-LILKHSNFQDLDQVLDQLKIKAVDGMLFDLGVSSPQLDNPERGFSYQKNGP 122 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ S ++A +VN + +L +I+ GEE ++RIA IVK R+ +TT DL Sbjct: 123 LDMRMNSSQSLTAKTIVNNYSAAELEKIITEYGEENWSARIAEFIVKMRKEKVIETTDDL 182 Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+ + + + + HPA R+FQALRI NNE+E+L + A LK GG L++++F Sbjct: 183 VEVIKAAIPKAVRRSGGHPARRTFQALRIETNNELEQLKNLIDKAVSYLKPGGRLVIITF 242 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK F + I + + ITK + ++ + N RSRSA Sbjct: 243 HSLEDRIVKHKFRDLAKDCTCPPDFPICVCDKKSEVKVITKSPIQASEIEKEGNPRSRSA 302 Query: 310 KLRAGMRT 317 K+R + Sbjct: 303 KMRVAEKI 310 >gi|242373465|ref|ZP_04819039.1| S-adenosyl-methyltransferase MraW [Staphylococcus epidermidis M23864:W1] gi|242348828|gb|EES40430.1| S-adenosyl-methyltransferase MraW [Staphylococcus epidermidis M23864:W1] Length = 304 Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats. Identities = 98/301 (32%), Positives = 158/301 (52%), Gaps = 9/301 (2%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRD 80 +L + I LN V +D T G G++ +IA+D+D A+ +E +++ Sbjct: 1 MLNETIDYLNIKEDGVYVDCTLGGAGHALYLLNQLNDEGRLIAIDQDLTAIENAKEVLKE 60 Query: 81 YKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 + + + F +L + + + + VDG+ +DLGVSS Q+D +RGFS+ LDMRM Sbjct: 61 HLHKVTFVHNNFRELTNILKELNIEKVDGIYYDLGVSSPQLDVPERGFSYHHDAKLDMRM 120 Query: 138 SCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 + +SA +VVN+ + + L +I GEEK + +IA I R+ P +TT L +I+ Sbjct: 121 DQTQSLSAYEVVNEWSYEALVKIFYRYGEEKFSKQIARRIEANREQQPIETTLQLVDIIK 180 Query: 197 KTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + + + HPA R FQA+RI VN+E+ + A + +K G + V++FHSLED Sbjct: 181 EGIPAKARRKGGHPAKRVFQAIRIAVNDELSAFEDSIEQAIENVKVNGRISVITFHSLED 240 Query: 256 RLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 RL K+ F R I A+ + + +K + T+ED+ N R+RSAKLR Sbjct: 241 RLCKQIFQEYEKGPEVPRGLPIIPEAYSPKLKRVNRKPITATEEDLDENNRARSAKLRVA 300 Query: 315 M 315 Sbjct: 301 E 301 >gi|222031913|emb|CAP74651.1| S-adenosyl-L-methionine-dependent methyltransferase [Escherichia coli LF82] gi|312944688|gb|ADR25515.1| S-adenosyl-methyltransferase MraW [Escherichia coli O83:H1 str. NRG 857C] Length = 313 Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats. Identities = 118/312 (37%), Positives = 179/312 (57%), Gaps = 19/312 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ + Sbjct: 6 KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +FS+ FS L +YV ++ +DG++ DLGVSS Q+D +RGFSF + G Sbjct: 66 TI---DDPRFSIIYGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDG 122 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + G SA++ + A D+ +L GEE+ A RIA AIV+R + P T++ Sbjct: 123 PLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKE 182 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L ++SF Sbjct: 183 LAEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISF 241 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305 HSLEDR+VK+F S + + +++ K ++P +E+VA N R Sbjct: 242 HSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGK--LMPGEEEVAENPR 299 Query: 306 SRSAKLRAGMRT 317 +RS+ LR RT Sbjct: 300 ARSSVLRIAERT 311 >gi|119944895|ref|YP_942575.1| S-adenosyl-methyltransferase MraW [Psychromonas ingrahamii 37] gi|262825199|sp|A1SU11|RSMH_PSYIN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|119863499|gb|ABM02976.1| S-adenosyl-methyltransferase MraW [Psychromonas ingrahamii 37] Length = 315 Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats. Identities = 128/318 (40%), Positives = 183/318 (57%), Gaps = 14/318 (4%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSC 73 + H VLL++ + L + +D TFG GG+SR +IA+DRDP A+ Sbjct: 1 MAKHTTVLLDEAVNGLGLKTDGIYVDGTFGRGGHSRHILGQLGAQGRLIAIDRDPRAIET 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQK 129 G+ M++ +F++ FS L +Y+ + G +DGV+ DLGVSS QID DRGFSF + Sbjct: 61 GEALMKE-DPRFTIIHGPFSGLAEYIKELGLAGQIDGVLLDLGVSSPQIDDADRGFSFMR 119 Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM SGISA+ + +A+V D+ +L GEEK A RIA AIV R PF T Sbjct: 120 DGPLDMRMDPTSGISAAQWLAKADVDDIGWVLKTFGEEKFAFRIARAIVADRTETPFLRT 179 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ LI++ + + HPATRSFQA+RI+VN+E+EE+ + L A + L GG L V+ Sbjct: 180 LQLAQLIERLCP-KREKKKHPATRSFQAIRIYVNSELEEIHKVLDGALEILAIGGQLSVI 238 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA---HPAVFQSITKKVVVPTQEDVAFNRR 305 SFHSLEDR+VK+F + + + A H +S+ K + P+ E++ N R Sbjct: 239 SFHSLEDRIVKRFIRKQEKGREYPPGLPLTEAQMQHGKTLKSLA-KALKPSAEEINENTR 297 Query: 306 SRSAKLRAGMRTVERSIE 323 +RS+ LR + E E Sbjct: 298 ARSSVLRVAQKIAEPESE 315 >gi|260912995|ref|ZP_05919480.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Pasteurella dagmatis ATCC 43325] gi|260632985|gb|EEX51151.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Pasteurella dagmatis ATCC 43325] Length = 321 Score = 366 bits (941), Expect = 2e-99, Method: Composition-based stats. Identities = 122/325 (37%), Positives = 177/325 (54%), Gaps = 20/325 (6%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M+ + +H+ VLL + + L + +D TFG GG+SR +IA+D Sbjct: 1 MNKQNTFSSPEHITVLLNEAVDGLALKERGIYIDGTFGRGGHSRLILSKLSDNGRLIAID 60 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCG 121 RDP A++ + +F + +FS + + G +DG++ DLGVSS Q+D Sbjct: 61 RDPRAIAEANKI---QDARFHIEHNSFSAIPEICEKLGLTGKIDGILLDLGVSSPQLDEA 117 Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF K GPLDMRM + G+SAS+ + Q + DL +L GEE+ A RIA AIV Sbjct: 118 ERGFSFMKDGPLDMRMDTTQGLSASEWLQQVSESDLAWVLKTFGEERFAKRIASAIVNYN 177 Query: 181 QS------APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234 +S P T L+ LI ++V F K+ HPATRSFQA+RIF+N E++EL L+S Sbjct: 178 KSAQQNGSGPLTRTLQLAELIAQSVPF-KDKHKHPATRSFQAIRIFINAELDELESVLQS 236 Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI--TKKV 292 A L G L ++SFHSLEDR+VK F +S + + Q++ K Sbjct: 237 ALSVLAPEGRLSIISFHSLEDRMVKHFMRKQSKGESLPKGLPLREDQIKRSQTLKTIGKA 296 Query: 293 VVPTQEDVAFNRRSRSAKLRAGMRT 317 ++P++E+ A N RSRSA LR + Sbjct: 297 IMPSEEEQANNPRSRSAVLRVAEKI 321 >gi|255010082|ref|ZP_05282208.1| S-adenosyl-methyltransferase MraW [Bacteroides fragilis 3_1_12] gi|313147877|ref|ZP_07810070.1| S-adenosyl-methyltransferase mraW [Bacteroides fragilis 3_1_12] gi|313136644|gb|EFR54004.1| S-adenosyl-methyltransferase mraW [Bacteroides fragilis 3_1_12] Length = 304 Score = 366 bits (941), Expect = 2e-99, Method: Composition-based stats. Identities = 110/310 (35%), Positives = 166/310 (53%), Gaps = 16/310 (5%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFA 70 I HVPVLL++ + +N P +D TFG GG+SR G ++ D+D A Sbjct: 3 EEEITYHVPVLLKESVDAMNITPDGTYVDVTFGGGGHSREILSRLGNGGRLLGFDQDEDA 62 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSF 127 E F+ ++ F L +++ GVD ++ DLGVSS D +RGFSF Sbjct: 63 -----ERNIVNDPHFTFVRSNFRYLHNFLRYHDIEGVDSILADLGVSSHHFDDSERGFSF 117 Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + G LDMRM+ +GI+A+DVVN + L I + GE K + ++A IVK R + Sbjct: 118 RFDGKLDMRMNKRAGITAADVVNTYEEERLADIFYLYGELKNSRKLASVIVKARSGQKIE 177 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T + +++ F + + FQALRI VN E+E L + L +A +ALK GG L+ Sbjct: 178 TIGEFLEVVKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLMAATEALKPGGRLV 235 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+++HSLEDR+VK + + + + + P F+ + KV+VP +E++A N RS Sbjct: 236 VITYHSLEDRMVKNIMKTGNVEGKTTQDFFGNLQTP--FRLVNNKVIVPDEEEIARNPRS 293 Query: 307 RSAKLRAGMR 316 RSAKLR + Sbjct: 294 RSAKLRIAEK 303 >gi|331703577|ref|YP_004400264.1| S adenosyl methyltransferase MraW [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328802132|emb|CBW54286.1| S adenosyl methyltransferase MraW [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 308 Score = 366 bits (941), Expect = 2e-99, Method: Composition-based stats. Identities = 102/310 (32%), Positives = 164/310 (52%), Gaps = 15/310 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 H+PVLL++ I LN P + +D T G G+S K + + A+D+D A+ + Sbjct: 3 KHIPVLLKESIEYLNIKPDGIYVDCTLGRAGHSSEILKRLNQKGFLYAIDQDQIAIDQAK 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + F L Q FS L + VDG+++DLGVSS QID RGFS++ GP Sbjct: 63 EKLEQINNNFLLIQGNFSNLSALLAINHVFNVDGILYDLGVSSPQIDIASRGFSYKMDGP 122 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + ++A V+N + ++ IL GEE + I+ IV+ R P +T +L Sbjct: 123 LDMRMDLNSTLTAHQVINTYSESQISEILFKYGEESFSKSISKKIVESR---PINSTLEL 179 Query: 192 SSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+ + + HPA ++FQALRI++NNE+ L L+ A L + + V++F Sbjct: 180 VEIIKSALPQKVLKQKKHPAKKTFQALRIYINNELIALENSLKQALDLLNSKARICVITF 239 Query: 251 HSLEDRLVKKFF---ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 HSLE+++VK F + + + I ++ + + F+ + KK + P+ ++ N RS Sbjct: 240 HSLEEKIVKNIFNNSTNYYQEQLLSNLPIKADLN-SKFKLVIKKPIKPSLLELEQNHRSH 298 Query: 308 SAKLRAGMRT 317 SAKL + Sbjct: 299 SAKLWVIEKN 308 >gi|324008349|gb|EGB77568.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 57-2] Length = 313 Score = 366 bits (941), Expect = 2e-99, Method: Composition-based stats. Identities = 118/312 (37%), Positives = 179/312 (57%), Gaps = 19/312 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ + Sbjct: 6 KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +FS+ FS L +YV ++ +DG++ DLGVSS Q+D +RGFSF + G Sbjct: 66 TI---DDRRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDG 122 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + G SA++ + A D+ +L GEE+ A RIA AIV+R + P T++ Sbjct: 123 PLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKE 182 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L ++SF Sbjct: 183 LAEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISF 241 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305 HSLEDR+VK+F S + + +++ K ++P +E+VA N R Sbjct: 242 HSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGK--LMPGEEEVAENPR 299 Query: 306 SRSAKLRAGMRT 317 +RS+ LR RT Sbjct: 300 ARSSVLRIAERT 311 >gi|119469206|ref|ZP_01612190.1| S-adenosyl-methyltransferase MraW [Alteromonadales bacterium TW-7] gi|119447458|gb|EAW28726.1| S-adenosyl-methyltransferase MraW [Alteromonadales bacterium TW-7] Length = 312 Score = 366 bits (941), Expect = 2e-99, Method: Composition-based stats. Identities = 125/308 (40%), Positives = 182/308 (59%), Gaps = 13/308 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 +HV VL+++ I L P + +D TFG GG+S + A+D+DP A+ Sbjct: 6 EHVSVLMDETIDALAIKPDGIYMDGTFGRGGHSGQILARLGDAGRLQAIDQDPQAIKSA- 64 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E D +F++ FS+L D VDG++ D+GVSS Q+D +RGFSF K G Sbjct: 65 EKFAD-DSRFAIAHTRFSKLYDVAEQNDLIGKVDGILLDIGVSSPQLDDAERGFSFMKDG 123 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM SG SA+ + +A + D+T ++ LGEEK RIAH I++ R+ P TT+ Sbjct: 124 PLDMRMDPTSGRSAAQWLAEAELDDITHVIKKLGEEKFGKRIAHKILETREHTPITTTKQ 183 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ L+ + V K+ HPATR+FQA+RI++N+E+EE+ L+SA K LK GG L+V+SF Sbjct: 184 LADLVDEAVPV-KDKFKHPATRTFQAIRIYINSELEEIQTALQSAVKVLKPGGRLVVISF 242 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI--TKKVVVPTQEDVAFNRRSRS 308 HSLEDR+VK+F +S R + ++A ++ K + P+ E+VA N RSRS Sbjct: 243 HSLEDRIVKQFIRKQSKGEALPRGLPLTDAQINQNLTLKAVGKAIKPSTEEVARNPRSRS 302 Query: 309 AKLRAGMR 316 + LR R Sbjct: 303 SVLRVAQR 310 >gi|24378941|ref|NP_720896.1| S-adenosyl-methyltransferase MraW [Streptococcus mutans UA159] gi|30173045|sp|Q8DVM7|RSMH_STRMU RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|24376827|gb|AAN58202.1|AE014891_6 conserved hypoyhetical protein [Streptococcus mutans UA159] Length = 316 Score = 366 bits (941), Expect = 2e-99, Method: Composition-based stats. Identities = 101/321 (31%), Positives = 165/321 (51%), Gaps = 15/321 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 M++ H H+ VLL + I +L+ P + +DAT G G+S ++ D Sbjct: 1 MTNDFH-----HITVLLHETIDMLDIKPDGIYVDATLGGAGHSECLLSKLGKEGHLYCFD 55 Query: 66 RDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120 +D A+ + ++ Y Q S + F L+ + D+G+ DG+ +DLGVSS Q+D Sbjct: 56 QDQKAIDNAKIRLQQYVKTGQVSFIKDNFRHLKSRLADEGIYEIDGICYDLGVSSPQLDE 115 Query: 121 GDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS++K PLDMRM+ ++A DVVN + +DL R+ GE+K + +IA I Sbjct: 116 RERGFSYKKDAPLDMRMNQDAQLTAFDVVNTYDYRDLVRLFFKYGEDKFSKQIARKIESA 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R+ +TT +L+ +I+ + + HPA + FQA+RI VN+E+ + L A Sbjct: 176 RKEKLIETTAELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAAEESLTQALDL 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L G + V++FHSLEDRL K+ F + + F + +K ++P Sbjct: 236 LALNGRIAVITFHSLEDRLTKQLFKEVTTLDVPKGLPFVPENLQPKFSLVNRKPILPNAR 295 Query: 299 DVAFNRRSRSAKLRAGMRTVE 319 +++ N R+ SAKLR + Sbjct: 296 ELSENNRAHSAKLRVIQKIRN 316 >gi|227499845|ref|ZP_03929938.1| S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Anaerococcus tetradius ATCC 35098] gi|227217954|gb|EEI83227.1| S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Anaerococcus tetradius ATCC 35098] Length = 309 Score = 366 bits (941), Expect = 2e-99, Method: Composition-based stats. Identities = 109/313 (34%), Positives = 173/313 (55%), Gaps = 12/313 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69 +++ +H+PVL I LN V +D T G GG+S+ + +IA+D+D Sbjct: 1 MNNMKFEHIPVLATDTIKNLNIKKDGVYVDLTLGKGGHSKMILENLSDKGRLIAIDQDKE 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFS 126 A+ +E ++D+ + + F + ++ + + G +DG + D+GVSS QID +RGFS Sbjct: 61 AIEAAKENLKDF-SNVTFINSNFEKFEEVLANLGLDLIDGALMDIGVSSYQIDNAERGFS 119 Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 + K GPLDMRM+ + ++A VVN+ + +L RI GEE+ + +A I+K+R Sbjct: 120 YMKDGPLDMRMNQDNELTAEIVVNEYSQDELERIFFEYGEERFSKSVARNIIKQRSEGRI 179 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 +T L +I+K++ K+N HP R FQALRI VN E+E L + + LK GG + Sbjct: 180 DSTIKLRDIIRKSI---KSNETHPEKRVFQALRIEVNRELEVLENTIETVVDHLKVGGRI 236 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 ++SFHSLEDR+VK F + + + H A + IT+K + T +++ N Sbjct: 237 AIISFHSLEDRIVKNKFKDLATSCICPPELPVCVCNHKAKIKVITRKPITATMKELKMNS 296 Query: 305 RSRSAKLRAGMRT 317 RS+ AKLR G R Sbjct: 297 RSKPAKLRVGERI 309 >gi|194434429|ref|ZP_03066691.1| S-adenosyl-methyltransferase MraW [Shigella dysenteriae 1012] gi|194417345|gb|EDX33452.1| S-adenosyl-methyltransferase MraW [Shigella dysenteriae 1012] gi|332098043|gb|EGJ03016.1| S-adenosyl-methyltransferase MraW [Shigella dysenteriae 155-74] Length = 313 Score = 366 bits (941), Expect = 2e-99, Method: Composition-based stats. Identities = 118/312 (37%), Positives = 179/312 (57%), Gaps = 19/312 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ + Sbjct: 6 KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +FS+ FS L +YV ++ +DG++ DLGVSS Q+D +RGFSF + G Sbjct: 66 TI---DDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDG 122 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + G SA++ + A D+ +L GEE+ A RIA AIV+R + P T++ Sbjct: 123 PLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKE 182 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L ++SF Sbjct: 183 LAEVVAAATSV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISF 241 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305 HSLEDR+VK+F S + + +++ K ++P +E+VA N R Sbjct: 242 HSLEDRIVKRFMRENSRGPQVPVGLPMTEEQLKKLGGRQLRALGK--LMPGEEEVAENPR 299 Query: 306 SRSAKLRAGMRT 317 +RS+ LR RT Sbjct: 300 ARSSVLRIAERT 311 >gi|288800555|ref|ZP_06406013.1| S-adenosyl-methyltransferase MraW [Prevotella sp. oral taxon 299 str. F0039] gi|288332768|gb|EFC71248.1| S-adenosyl-methyltransferase MraW [Prevotella sp. oral taxon 299 str. F0039] Length = 312 Score = 366 bits (941), Expect = 2e-99, Method: Composition-based stats. Identities = 112/309 (36%), Positives = 167/309 (54%), Gaps = 18/309 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA-----V 71 H+PVLL + I LN PG + +D T G GG+S K +++ + D+D A Sbjct: 9 HIPVLLNESIDGLNIQPGGIYVDVTMGGGGHSHEILKRLDVNAHLYSFDQDADAEANLKQ 68 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQ 128 + G + ++D E+F+ ++ F L++++ GV DG++ DLGVSS D RGFSF+ Sbjct: 69 NHGDDLLKD--ERFTFVRSNFRYLKNWMRYHGVEQIDGLLADLGVSSHHFDDESRGFSFR 126 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 PLDMRM+ S +A+D+VN + L I + GE K + +IA +VK RQ +T Sbjct: 127 FESPLDMRMNKRSSRTAADIVNNYAEEALADIFYLYGELKNSRKIASLLVKARQEKRIET 186 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T D ++++ F + + FQALRI VN E+ L + L S LK GG L V Sbjct: 187 TGDFIAVVEPL--FKREREKKDLAKLFQALRIEVNGEMSALKELLMSVVDMLKPGGRLSV 244 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +++HSLEDR+VK + + + + P F+ I KV+VPT E+ N RSR Sbjct: 245 ITYHSLEDRIVKNIMKAGNIEGKIEQDFFGCINTP--FKLINNKVIVPTDEEQEQNPRSR 302 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 303 SAKLRIAEK 311 >gi|116494758|ref|YP_806492.1| SAM-dependent methyltransferase for cell envelope biogenesis [Lactobacillus casei ATCC 334] gi|122263824|sp|Q039S2|RSMH_LACC3 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|116104908|gb|ABJ70050.1| SAM-dependent methyltransferase for cell envelope biogenesis [Lactobacillus casei ATCC 334] Length = 313 Score = 366 bits (941), Expect = 2e-99, Method: Composition-based stats. Identities = 112/311 (36%), Positives = 161/311 (51%), Gaps = 10/311 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73 T H VLL++ A L P +DAT G GG++R +IA D+D A++ Sbjct: 2 TEFKHETVLLKEATAALAVKPAGTYVDATLGRGGHTRQILNHLTTGRLIAFDQDEAAIAT 61 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +Q +L F L D + G VDG+++DLGVSS Q D RGFS++ Sbjct: 62 VTADFGTLPKQLTLVHRNFRDLTDALTTLGITEVDGILYDLGVSSPQFDDSKRGFSYRFD 121 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM + A +VN+ DL RI GEE + +IA I + R P TT Sbjct: 122 APLDMRMDQRQTLDAKTIVNEWPYADLVRIFSRYGEEHFSKQIARRIEQARTVQPITTTF 181 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L LI+ + + HPA + FQA+RI VN+E+ L L A K + GG + V+ Sbjct: 182 QLVELIKAGIPAKARRTGGHPAKKVFQAIRIAVNDELSALESSLEQALKLINVGGRISVI 241 Query: 249 SFHSLEDRLVKKFFASRS--GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 +F SLEDRLVK F S V +IP++A P ++ + +K ++P++E++A N R+ Sbjct: 242 TFQSLEDRLVKTMFKEVSSVQDVPRGLPVIPASAQPN-YRLVNRKPILPSEEELAVNHRA 300 Query: 307 RSAKLRAGMRT 317 SAKLR + Sbjct: 301 HSAKLRVIEKI 311 >gi|215485248|ref|YP_002327679.1| S-adenosyl-methyltransferase MraW [Escherichia coli O127:H6 str. E2348/69] gi|312966210|ref|ZP_07780436.1| S-adenosyl-methyltransferase MraW [Escherichia coli 2362-75] gi|263447451|sp|B7UID2|RSMH_ECO27 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|215263320|emb|CAS07635.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Escherichia coli O127:H6 str. E2348/69] gi|312289453|gb|EFR17347.1| S-adenosyl-methyltransferase MraW [Escherichia coli 2362-75] Length = 313 Score = 366 bits (941), Expect = 3e-99, Method: Composition-based stats. Identities = 118/312 (37%), Positives = 180/312 (57%), Gaps = 19/312 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ + Sbjct: 6 KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +FS+ FS L +YV ++ +DG++ DLGVSS Q+D +RGFSF + G Sbjct: 66 TI---DDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDG 122 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + G SA++ + A D+ +L GEE+ A RIA AIV+R + P T++ Sbjct: 123 PLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKE 182 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L +GG L ++SF Sbjct: 183 LAEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLASGGRLSIISF 241 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305 HSLEDR+VK+F S + + +++ K ++P +E+VA N R Sbjct: 242 HSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGK--LMPGEEEVAENPR 299 Query: 306 SRSAKLRAGMRT 317 +RS+ LR RT Sbjct: 300 ARSSVLRIAERT 311 >gi|227885013|ref|ZP_04002818.1| S-adenosyl-methyltransferase MraW [Escherichia coli 83972] gi|301048472|ref|ZP_07195498.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 185-1] gi|227837842|gb|EEJ48308.1| S-adenosyl-methyltransferase MraW [Escherichia coli 83972] gi|300299686|gb|EFJ56071.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 185-1] gi|307551926|gb|ADN44701.1| S-adenosyl-dependent methyltransferase MraW [Escherichia coli ABU 83972] Length = 313 Score = 366 bits (941), Expect = 3e-99, Method: Composition-based stats. Identities = 119/312 (38%), Positives = 179/312 (57%), Gaps = 19/312 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ + Sbjct: 6 KHFTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +FS+ FS L +YV D+ +DG++ DLGVSS Q+D +RGFSF + G Sbjct: 66 TI---DDPRFSIIHGPFSALGEYVADRDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDG 122 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + G SA++ + A D+ +L GEE+ A RIA AIV+R + P T++ Sbjct: 123 PLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKE 182 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L ++SF Sbjct: 183 LAEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLHVLAPGGRLSIISF 241 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305 HSLEDR+VK+F S + + +++ K ++P +E+VA N R Sbjct: 242 HSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGK--LMPGEEEVAENPR 299 Query: 306 SRSAKLRAGMRT 317 +RS+ LR RT Sbjct: 300 ARSSVLRIAERT 311 >gi|56412392|ref|YP_149467.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197361328|ref|YP_002140963.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|68565445|sp|Q5PDH4|RSMH_SALPA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262826422|sp|B5BLG4|RSMH_SALPK RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|56126649|gb|AAV76155.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197092803|emb|CAR58229.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 313 Score = 366 bits (940), Expect = 3e-99, Method: Composition-based stats. Identities = 120/312 (38%), Positives = 181/312 (58%), Gaps = 19/312 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ Q Sbjct: 6 KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAQ 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +FS+ FS L DYV ++ +DG++ DLGVSS Q+D +RGFSF + G Sbjct: 66 ---AISDPRFSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFMRDG 122 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + G SA++ + A D+ +L GEE+ A RIA AIV+R + P T++ Sbjct: 123 PLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIARAIVERNREQPMTRTKE 182 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L ++SF Sbjct: 183 LAEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSIISF 241 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305 HSLEDR+VK+F +S + + A +++ K ++P +++VA N R Sbjct: 242 HSLEDRIVKRFMREQSRGPQVPAGLPMTEAQLKKLGGRELRALGK--LMPGEKEVAENPR 299 Query: 306 SRSAKLRAGMRT 317 +RS+ LR RT Sbjct: 300 ARSSVLRIAERT 311 >gi|87161763|ref|YP_493770.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194885|ref|YP_499685.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus NCTC 8325] gi|253731798|ref|ZP_04865963.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|87127737|gb|ABD22251.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202443|gb|ABD30253.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus NCTC 8325] gi|253724469|gb|EES93198.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|298694470|gb|ADI97692.1| S-adenosyl-methyltransferase [Staphylococcus aureus subsp. aureus ED133] gi|302751002|gb|ADL65179.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus str. JKD6008] gi|320141006|gb|EFW32853.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus MRSA131] gi|320143062|gb|EFW34852.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp. aureus MRSA177] Length = 304 Score = 366 bits (940), Expect = 3e-99, Method: Composition-based stats. Identities = 98/301 (32%), Positives = 157/301 (52%), Gaps = 9/301 (2%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRD 80 +L + I LN V +D T G G++ +IA+D+D A+ +E ++D Sbjct: 1 MLNETIDYLNVKENGVYIDCTLGGAGHALYLLNQLNDDGRLIAIDQDQTAIDNAKEVLKD 60 Query: 81 YKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 + + + + F +L + D + VDG+ +DLGVSS Q+D +RGFS+ LDMRM Sbjct: 61 HLHKVTFVHSNFRELTQILKDLNIEKVDGIYYDLGVSSPQLDIPERGFSYHHDATLDMRM 120 Query: 138 SCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 + ++A ++VN + + L +I GEEK + +IA I R+ P TT +L +I+ Sbjct: 121 DQTQELTAYEIVNNWSYEALVKIFYRYGEEKFSKQIARRIEAHREQQPITTTLELVDIIK 180 Query: 197 KTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + + + HPA R FQALRI VN+E+ + A + +K G + V++FHSLED Sbjct: 181 EGIPAKARRKGGHPAKRVFQALRIAVNDELSAFEDSIEQAIELVKVDGRISVITFHSLED 240 Query: 256 RLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 RL K+ F R + A+ + + +K + T+ED+ N R+RSAKLR Sbjct: 241 RLCKQVFQEYEKGPEVPRGLPVIPEAYTPKLKRVNRKPITATEEDLDDNNRARSAKLRVA 300 Query: 315 M 315 Sbjct: 301 E 301 >gi|42561121|ref|NP_975572.1| S-adenosyl-methyltransferase MraW [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|115311585|sp|P62473|RSMH_MYCMS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|42492618|emb|CAE77214.1| MraW methylase family protein [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|301320523|gb|ADK69166.1| S-adenosyl-methyltransferase MraW [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 308 Score = 366 bits (940), Expect = 3e-99, Method: Composition-based stats. Identities = 102/310 (32%), Positives = 164/310 (52%), Gaps = 15/310 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 H+PVLL++ I LN P + +D T G G+S K + + A+D+D A+ + Sbjct: 3 KHIPVLLKESIEYLNIKPDGIYVDCTLGRAGHSSEILKKLNQKGFLYAIDQDQIAIDQAK 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + F L Q FS L + VDG+++DLGVSS QID RGFS++ GP Sbjct: 63 EKLEQINNNFLLIQGNFSNLSALLAINHVFNVDGILYDLGVSSPQIDIASRGFSYKMDGP 122 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + ++A V+N + ++ IL GEE + I+ IV+ R P +T +L Sbjct: 123 LDMRMDLNSTLTAHQVINTYSESQISEILFKYGEESFSKSISKKIVESR---PINSTLEL 179 Query: 192 SSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+ + + HPA ++FQALRI++NNE+ L L+ A L + + V++F Sbjct: 180 VEIIKSALPQKVLKQKKHPAKKTFQALRIYINNELIALENSLKQALDLLNSKARICVITF 239 Query: 251 HSLEDRLVKKFF---ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 HSLE+++VK F + + + I ++ + + F+ + KK + P+ ++ N RS Sbjct: 240 HSLEEKIVKNIFNNSTNYYQEQLLSNLPIKADLN-SKFKLVIKKPIKPSLLELEQNHRSH 298 Query: 308 SAKLRAGMRT 317 SAKL + Sbjct: 299 SAKLWVIEKN 308 >gi|85858517|ref|YP_460719.1| S-adenosyl-methyltransferase mraW [Syntrophus aciditrophicus SB] gi|123515897|sp|Q2LR39|RSMH_SYNAS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|85721608|gb|ABC76551.1| S-adenosyl-methyltransferase mraW [Syntrophus aciditrophicus SB] Length = 315 Score = 366 bits (940), Expect = 3e-99, Method: Composition-based stats. Identities = 112/307 (36%), Positives = 175/307 (57%), Gaps = 9/307 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H PVLLE+ IA LN G + +D T G GG++ + + ++ +D D A+ ++ Sbjct: 9 HEPVLLEEAIASLNCRGGGIYVDGTVGGGGHAALILERSAPDGFLLGMDVDGDALQAAEK 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + + +L +A ++ ++ + D VDG++ DLGVSS Q+D +RGFS K PL Sbjct: 69 RLMPFGRRKTLVKANYADMRKVLADLKILQVDGILLDLGVSSHQLDAAERGFSLLKDAPL 128 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM G SA DVVN + ++L I+ GEE A RIA AI ++R+ P ++T L+ Sbjct: 129 DMRMDSEAGRSAYDVVNTCSERELKDIIRKYGEEIMAGRIARAIAEKRKDTPIKSTTQLA 188 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +++ + ++ +IHPATR+FQALRI++NNE+ L + + + LK GG ++SFH Sbjct: 189 AIVAGALPGGFRHKKIHPATRTFQALRIYINNELSNLHRAIFDSTDCLKPGGRFSIISFH 248 Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLED LVK F S + + + + IT+K + P +++V N RSRSA+ Sbjct: 249 SLEDSLVKNGFRSLEKGCICPADMPVCACGQSPRLKVITRKPISPCRDEVEANPRSRSAR 308 Query: 311 LRAGMRT 317 LR R Sbjct: 309 LRTAERI 315 >gi|34499806|ref|NP_904021.1| S-adenosyl-methyltransferase MraW [Chromobacterium violaceum ATCC 12472] gi|42559445|sp|Q7NPZ1|RSMH_CHRVO RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|34105656|gb|AAQ62010.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 320 Score = 366 bits (940), Expect = 3e-99, Method: Composition-based stats. Identities = 118/322 (36%), Positives = 172/322 (53%), Gaps = 10/322 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPF 69 + H VLL + + L P V +D TFG GG+SR +IA D+DP Sbjct: 1 MSTPTFVHRTVLLTEAVDALAIRPDGVYVDCTFGRGGHSRLILSKLGPSGRLIAFDKDPE 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFS 126 A++ + + +F++ F L + GVDGV+ DLGVSS QID G RGFS Sbjct: 61 AIAVA-DRLAAEDSRFNIVHNGFETLSAELARLGVAGVDGVLMDLGVSSPQIDDGSRGFS 119 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 F+ PLDMRM + G++A++ + A+ D+ ++ GEE+ A +IA AIV +R +P Sbjct: 120 FRFDAPLDMRMDTTRGVTAAEWLATADEADIREVIKTYGEERFARKIAAAIVAQRDESPI 179 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT++L+ L+ + V + + PATR+FQA+RIFVN E++EL L A + L GG L Sbjct: 180 TTTRELAVLVGQNVRTREPGQ-DPATRTFQAIRIFVNRELDELKAVLPQAARLLNEGGRL 238 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFNR 304 V+SFHSLEDR+VK + S + + A A + K + E+V N Sbjct: 239 AVISFHSLEDRIVKLYLRDVSSEEKLPAWAMVRAADMAQPPIDLVGKAIRAGDEEVRENP 298 Query: 305 RSRSAKLRAGMRTVERSIEDDS 326 R+RSA +R RT E D+ Sbjct: 299 RARSAIMRVAQRTAAPWREGDA 320 >gi|87122635|ref|ZP_01078512.1| hypothetical protein MED121_20371 [Marinomonas sp. MED121] gi|86162093|gb|EAQ63381.1| hypothetical protein MED121_20371 [Marinomonas sp. MED121] Length = 313 Score = 366 bits (940), Expect = 3e-99, Method: Composition-based stats. Identities = 114/313 (36%), Positives = 177/313 (56%), Gaps = 10/313 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFA 70 + +I H+ V+L + + L P +D TFG GG+SR + ++ D+DP A Sbjct: 1 MTESIPVHISVMLNESVEDLITDPNGNYIDGTFGRGGHSRLVLQKLENGKLLGFDKDPVA 60 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRGF 125 + G + + +F + Q +F+ + Y+ +DGV+ DLGVSS Q+D +RGF Sbjct: 61 IEYG-KALEGEDARFQIVQDSFASMDQYIASHLDESGKLDGVLMDLGVSSPQLDDAERGF 119 Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF GPLDMRM+ G+SA+ + QA K++ ++ GEE+ + RIA AI + R Sbjct: 120 SFMNDGPLDMRMNPGVGLSAAQWIAQAKEKEIADVMYQYGEERFSRRIAKAICEYRAHTE 179 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 TT L+++++ + + +PATR+FQ +RIF+NNE+ +L GL SA ALK GG Sbjct: 180 ILTTLQLANIVKDANPAWEKGK-NPATRAFQGIRIFINNELGDLETGLESAANALKVGGR 238 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 L+V+SFHSLEDR+VK+F + S RH+ N ++ K + P++++V N Sbjct: 239 LVVISFHSLEDRIVKRFMKTMSKGPDLPRHLPIRNTELSIKFKTIGKAIKPSKQEVDDNV 298 Query: 305 RSRSAKLRAGMRT 317 RSRSA +R R Sbjct: 299 RSRSAVMRVLERV 311 >gi|168464328|ref|ZP_02698231.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|194443193|ref|YP_002039352.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|262826395|sp|B4SU42|RSMH_SALNS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|194401856|gb|ACF62078.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|195632559|gb|EDX51013.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 313 Score = 366 bits (940), Expect = 3e-99, Method: Composition-based stats. Identities = 120/312 (38%), Positives = 181/312 (58%), Gaps = 19/312 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ Q Sbjct: 6 KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAQ 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +FS+ FS L DYV ++ +DG++ DLGVSS Q+D +RGFSF + G Sbjct: 66 ---AINDPRFSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFMRDG 122 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + G SA++ + A D+ +L GEE+ A RIA AIV+R + P T++ Sbjct: 123 PLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIARAIVERNREQPMTRTKE 182 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L ++SF Sbjct: 183 LAEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSIISF 241 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305 HSLEDR+VK+F +S + + A +++ K ++P +++VA N R Sbjct: 242 HSLEDRIVKRFMREQSRGPQVPAGLPMTEAQLKKLGGRELRALGK--LMPGEKEVAENPR 299 Query: 306 SRSAKLRAGMRT 317 +RS+ LR RT Sbjct: 300 ARSSVLRIAERT 311 >gi|323699047|ref|ZP_08110959.1| S-adenosyl-methyltransferase MraW [Desulfovibrio sp. ND132] gi|323458979|gb|EGB14844.1| S-adenosyl-methyltransferase MraW [Desulfovibrio desulfuricans ND132] Length = 326 Score = 366 bits (940), Expect = 3e-99, Method: Composition-based stats. Identities = 118/318 (37%), Positives = 167/318 (52%), Gaps = 10/318 (3%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65 M S H VLL +V+ L P PG +D T G GG+S + + G+ ++ LD Sbjct: 1 MKSGEVSPASLHTTVLLHEVVRWLQPRPGGRYMDGTLGMGGHSLALLEAAGEGAELVGLD 60 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGD 122 RD A++ + + + LF FS+ ++ + + G +DG V DLGVSS+Q+D D Sbjct: 61 RDQEALALATRRLEPFAGRVHLFHLPFSRFEEALDEVGWERIDGAVLDLGVSSLQLDEAD 120 Query: 123 RGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF GPLDMRM SG SA ++VN +L RI+ + GE+ A +IA AIV+ R+ Sbjct: 121 RGFSFIHDGPLDMRMDPDSGPSAEELVNTLKHGELARIIRVYGEDPLAGKIASAIVRERE 180 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNN--RIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 T L+ +++ + R HPATR+FQ LRI VN E EEL L + L Sbjct: 181 KGAITRTLQLAEIVRLAYPPKMRHTARNHPATRTFQGLRIAVNRETEELEHYLATIVGRL 240 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQE 298 K G L ++SFHSLEDR VK F + H + + + +T+K V + Sbjct: 241 KPGARLAIISFHSLEDRAVKHAFRDAAKGCKCPPHQLHCTCGGVPEMKVLTRKPVAASDA 300 Query: 299 DVAFNRRSRSAKLRAGMR 316 + N R+RSAKLR R Sbjct: 301 ERDANPRARSAKLRVAER 318 >gi|220927929|ref|YP_002504838.1| S-adenosyl-methyltransferase MraW [Clostridium cellulolyticum H10] gi|263447445|sp|B8I6G6|RSMH_CLOCE RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|219998257|gb|ACL74858.1| S-adenosyl-methyltransferase MraW [Clostridium cellulolyticum H10] Length = 313 Score = 366 bits (940), Expect = 3e-99, Method: Composition-based stats. Identities = 114/310 (36%), Positives = 165/310 (53%), Gaps = 11/310 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 H VLL++ I LN + +D T G G+S K ++ LD+D FAV Sbjct: 4 KHTSVLLDECIEYLNINQEGIYVDGTIGGAGHSSEIYKRLGEKGCLVGLDQDSFAVETSI 63 Query: 76 ETMRDYKEQ--FSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + + K F + F ++ + VDG++ DLGVSS Q+D RGFS+Q Sbjct: 64 KRLDEIKSNADFKVVNTNFKNIKSACSGLGINEVDGILLDLGVSSHQLDEASRGFSYQHD 123 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM+ S +SA DVVN+ + +D+ RI+ GEEK ASRIA I + RQ+ P +TT Sbjct: 124 APLDMRMNTKSELSAYDVVNKYSEQDIYRIIRDFGEEKWASRIAKFITEARQNEPVETTY 183 Query: 190 DLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 DL +I+K V ++ + HPA R+FQA+RI VNNE+ L + + LK GG L ++ Sbjct: 184 DLVDIIKKAVPSSARRDGPHPAKRTFQAIRIEVNNELGILNKTIEDCVDLLKRGGRLCII 243 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+VK + + + I KK +V ++ N R+R Sbjct: 244 TFHSLEDRIVKMQYNKMVNPCTCPPAFPVCACGKKPKAVLINKKPIVSDIRELDKNPRAR 303 Query: 308 SAKLRAGMRT 317 SAKLR + Sbjct: 304 SAKLRVLQKI 313 >gi|37527526|ref|NP_930870.1| S-adenosyl-methyltransferase MraW [Photorhabdus luminescens subsp. laumondii TTO1] gi|42559441|sp|Q7N139|RSMH_PHOLL RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|36786961|emb|CAE16035.1| S-adenosyl-methyltransferase MraW [Photorhabdus luminescens subsp. laumondii TTO1] Length = 314 Score = 366 bits (940), Expect = 3e-99, Method: Composition-based stats. Identities = 120/320 (37%), Positives = 175/320 (54%), Gaps = 19/320 (5%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPF 69 + ++ H VLL++ + LN + +D TFG GG+SR +IA+DRDP Sbjct: 1 MANSHFKHTSVLLDEAVNGLNIRENGIYIDGTFGRGGHSRLILSQLGTEGRLIAIDRDPQ 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGF 125 A+ + +FS+ FS+L Y G +DGV+ DLGVSS Q+D +RGF Sbjct: 61 AIEVAK---AITDPRFSIVHGPFSKLAHYTEKAGLIGKIDGVLLDLGVSSPQLDDPERGF 117 Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF + GPLDMRM + G SA++ + A D+ +L GEE+ A RIA AIV Q P Sbjct: 118 SFMRDGPLDMRMDPTRGQSAAEWLMNATADDIAWVLKTFGEERFAKRIARAIVACNQEEP 177 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 T+ L+ LI + + ++ HPAT+SFQA+RI++N+E+EE+ Q L A + L G Sbjct: 178 ITRTKALADLIAQASPIKEKHK-HPATKSFQAIRIYINSELEEIEQALEGALQVLAPQGR 236 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQED 299 L V+SFHSLEDR+VK+F S + + +SI K + P++E+ Sbjct: 237 LSVISFHSLEDRIVKRFIRQNSRGPQVPAGLPLTEEQLKARGGRSLKSIGK--MKPSEEE 294 Query: 300 VAFNRRSRSAKLRAGMRTVE 319 VA N R+RS+ LR + E Sbjct: 295 VADNPRARSSVLRFAEKVSE 314 >gi|227535245|ref|ZP_03965294.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187129|gb|EEI67196.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 313 Score = 366 bits (940), Expect = 3e-99, Method: Composition-based stats. Identities = 111/311 (35%), Positives = 160/311 (51%), Gaps = 10/311 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73 T H VLL++ A L P +DAT G GG++R +IA D+D A++ Sbjct: 2 TEFKHETVLLKEATAALAVKPAGTYVDATLGRGGHTRQILNQLTTGRLIAFDQDEAAIAT 61 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +Q +L F L D + G VDG+++DLGVSS Q D RGFS++ Sbjct: 62 VTADFGTLPKQLTLVHRNFRDLTDALTTLGITEVDGILYDLGVSSPQFDDSKRGFSYRFD 121 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM + A +VN+ DL RI GEE + +IA I + R P TT Sbjct: 122 APLDMRMDQRQTLDAKTIVNEWPYADLVRIFSRYGEEHFSKQIARRIEQARTVQPITTTF 181 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L LI+ + + HPA + FQA+RI VN+E+ L L A K + GG + V+ Sbjct: 182 QLVELIKAGIPAKARRTGGHPAKKVFQAIRIAVNDELSALESSLEQALKLINVGGRISVI 241 Query: 249 SFHSLEDRLVKKFFASRS--GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 +F SLEDRLVK F S V +IP++A P ++ + +K ++P++E++ N R+ Sbjct: 242 TFQSLEDRLVKTMFKEVSSVQDVPRGLPVIPASAQPN-YRLVNRKPILPSEEELTVNHRA 300 Query: 307 RSAKLRAGMRT 317 SAKLR + Sbjct: 301 HSAKLRVIEKI 311 >gi|154252855|ref|YP_001413679.1| S-adenosyl-methyltransferase MraW [Parvibaculum lavamentivorans DS-1] gi|262824741|sp|A7HVT9|RSMH_PARL1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|154156805|gb|ABS64022.1| S-adenosyl-methyltransferase MraW [Parvibaculum lavamentivorans DS-1] Length = 339 Score = 366 bits (940), Expect = 3e-99, Method: Composition-based stats. Identities = 147/335 (43%), Positives = 207/335 (61%), Gaps = 6/335 (1%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSNVIALDRD 67 MS ++ H+PV+L V+ +L P G V +D TFGAGGY+R+ V+A+DRD Sbjct: 1 MSDNGQNSASPHIPVMLADVLDVLKPRDGGVYVDGTFGAGGYTRAILGSADCAVLAIDRD 60 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRG 124 P A+ G+ ++ + +L + F ++ V + G VDGVV D+GVSSMQ+D +RG Sbjct: 61 PTAILRGRALATEFAGRLTLIEGRFGDMKRLVRELGHGTVDGVVLDIGVSSMQLDQAERG 120 Query: 125 FSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 FSFQ+ GPLDMRM G SA+DVVN + DL RI+ + GEEK+A +A AIV RQ+A Sbjct: 121 FSFQQDGPLDMRMGGEGPSAADVVNHFDEADLARIIAVYGEEKRARAVARAIVAARQTAE 180 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 T +L+ L+ ++ +RIHPATR+FQALRIFVN+E+ ELA+GL AE L GG Sbjct: 181 LHRTLELADLVASVIHRKPQDRIHPATRTFQALRIFVNDELGELARGLSGAEDLLHEGGR 240 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFN 303 L VV+FHSLEDR+VK+F +R+G+ +P F+ I K + ++E+V N Sbjct: 241 LAVVAFHSLEDRIVKRFLTARTGRAGRANRYMPERDEVAPSFREIAHKAMKASEEEVEIN 300 Query: 304 RRSRSAKLRAGMRTVERSIE-DDSFVHLPRLPTLS 337 R+RSAKLRA RT ++ D + + +PTL Sbjct: 301 VRARSAKLRAAERTAAPALPLDLAALGFRAVPTLD 335 >gi|293391350|ref|ZP_06635684.1| S-adenosyl-methyltransferase MraW [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951884|gb|EFE02003.1| S-adenosyl-methyltransferase MraW [Aggregatibacter actinomycetemcomitans D7S-1] Length = 322 Score = 366 bits (940), Expect = 3e-99, Method: Composition-based stats. Identities = 123/325 (37%), Positives = 177/325 (54%), Gaps = 20/325 (6%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M+ + +H+ VLL + + L + +D TFG GG+SR +IA+D Sbjct: 1 MTHLNTFSSTEHLTVLLHETVDGLALKENGIYIDGTFGRGGHSRLILSQLSVNGKLIAID 60 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCG 121 RDP AV+ Q+ +F + TFS++ G VDG++ DLGVSS Q+D Sbjct: 61 RDPQAVAEAQKI---QDPRFHIEHNTFSEILPICEKFGLVGKVDGILLDLGVSSPQLDDA 117 Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF K GPLDMRM S GISA++ + Q + +DL +L GEE+ A RIA IV Sbjct: 118 ERGFSFMKDGPLDMRMDSSKGISAAEWLAQVSEQDLAWVLKTFGEERFAKRIAKVIVDYN 177 Query: 181 QSAP------FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234 +SA T L+ LI + V F K+ HPATRSFQA+RI++N E++EL L+S Sbjct: 178 KSAVQNGGEFLARTLQLAELIAQAVPF-KDKYKHPATRSFQAIRIYINAELDELENVLQS 236 Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ--SITKKV 292 A L G L V+SFHSLEDR+VK+F +S + + + + + K Sbjct: 237 ALSVLAPKGRLSVISFHSLEDRMVKQFMRKQSQGEVIPKGLPLREDQIQRNRRLKVIGKA 296 Query: 293 VVPTQEDVAFNRRSRSAKLRAGMRT 317 ++P++ ++ N R+RSA LR R Sbjct: 297 IMPSEAEIVQNPRARSAVLRVAERI 321 >gi|291296375|ref|YP_003507773.1| S-adenosyl-methyltransferase MraW [Meiothermus ruber DSM 1279] gi|290471334|gb|ADD28753.1| S-adenosyl-methyltransferase MraW [Meiothermus ruber DSM 1279] Length = 283 Score = 366 bits (940), Expect = 3e-99, Method: Composition-based stats. Identities = 123/302 (40%), Positives = 171/302 (56%), Gaps = 28/302 (9%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETM 78 +H PVL + + L+ PG + +DAT G G++R + G V+A D+DP A++ Q Sbjct: 2 NHTPVLYHEALDWLSIRPGGLYVDATLGGAGHTRGILERGGQVVAFDQDPAAIARAQAL- 60 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 +L QA F +L + +G VDG++ DLGVSS +D RGFS+Q GPLDM Sbjct: 61 --GLPNLTLIQANFRELVPELAKRGTPQVDGLLADLGVSSFHLDDAGRGFSYQHEGPLDM 118 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RM ++A +VVN + L IL GEE +A RIA IV+ R P TT L+ +I Sbjct: 119 RMGQGELTAHEVVNTYPEEALAEILFRYGEEPRARRIARFIVEHR---PIHTTTQLAEVI 175 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 ++ F + HPA +SFQALRI++N+E+ L Q LRSAE LK GG L+V+SFHSLED Sbjct: 176 RRATGF--RSAGHPARKSFQALRIYINDELGALEQLLRSAEAVLKPGGRLVVISFHSLED 233 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 RLVK F + +S+TKK +VP++ + N R+RSAK+R Sbjct: 234 RLVKHFLRESTA-----------------LRSLTKKPIVPSEAEQRENPRARSAKMRVAE 276 Query: 316 RT 317 R Sbjct: 277 RI 278 >gi|253689961|ref|YP_003019151.1| S-adenosyl-methyltransferase MraW [Pectobacterium carotovorum subsp. carotovorum PC1] gi|262824751|sp|C6DEV1|RSMH_PECCP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|251756539|gb|ACT14615.1| S-adenosyl-methyltransferase MraW [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 314 Score = 366 bits (939), Expect = 3e-99, Method: Composition-based stats. Identities = 118/311 (37%), Positives = 180/311 (57%), Gaps = 18/311 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H VLL++ + LN G + +D TFG GG+SR ++A+DRDP A+ + Sbjct: 6 KHTTVLLDEAVNGLNIRSGGIYIDGTFGRGGHSRLILSQLGPEGRLLAIDRDPQAIEAAK 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +FS+ FS + +YV + G +DGV+ DLGVSS Q+D +RGFSF + G Sbjct: 66 ---AIDDPRFSIIHGPFSAMAEYVAELGLTGQIDGVLLDLGVSSPQLDDPERGFSFMRDG 122 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + G+SA++ + +A D+ +L GEE+ A RIA AIV+R ++ P T++ Sbjct: 123 PLDMRMDPTRGLSAAEWLMKAEADDIVWVLKTFGEERFAKRIARAIVERNRTEPMTRTKE 182 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ LI + ++ HPATRSFQA+RI++N+E+EE+ + L A L G L V+SF Sbjct: 183 LAELIAAASPVREKHK-HPATRSFQAIRIYINSELEEIERALEGALSVLAPQGRLSVISF 241 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNRR 305 HSLEDR+VK+F +S + + +++ KK ++P++ +VA N R Sbjct: 242 HSLEDRIVKRFIRHQSRGPQVPAGLPLTEEQLRSQGGQTLKAVGKK-LMPSEAEVAENPR 300 Query: 306 SRSAKLRAGMR 316 +RS+ LR R Sbjct: 301 ARSSVLRFAER 311 >gi|303235618|ref|ZP_07322225.1| S-adenosyl-methyltransferase MraW [Prevotella disiens FB035-09AN] gi|302484065|gb|EFL47053.1| S-adenosyl-methyltransferase MraW [Prevotella disiens FB035-09AN] Length = 310 Score = 366 bits (939), Expect = 3e-99, Method: Composition-based stats. Identities = 111/307 (36%), Positives = 167/307 (54%), Gaps = 14/307 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC--G 74 HVPVLL++ I LN P V +D TFG GG+S+ ++ + D+D A G Sbjct: 9 HVPVLLKESIDGLNINPDGVYVDVTFGGGGHSKEILSRLSKKGHLYSFDQDADAEQNIKG 68 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + E F+ ++ F L++++ GV DG++ DLGVSS D +RGFSF+ Sbjct: 69 INNIEKL-ENFTFVRSNFRYLKNWLRYYGVEQIDGLLGDLGVSSHHFDDEERGFSFRFDA 127 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ +G +A+D++ Q +DL + + GE K + +IA AIV R++ P TT+D Sbjct: 128 PLDMRMNKRAGKTAADILLQYEEEDLANMFYLYGELKNSRKIAAAIVNSRKTKPILTTKD 187 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 S+++ F + + FQALRI VN E+ L + L A + LK G L V+++ Sbjct: 188 FQSVVEPL--FKREREKKEMAKLFQALRIEVNQEMAALKEMLIGASEVLKPNGRLSVITY 245 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDR+VK + + + + P F+ I KV+VP+Q + N RSRSAK Sbjct: 246 HSLEDRIVKNIMKTGNIEGKVEQDFFGKINSP--FKLINNKVIVPSQSEQKENPRSRSAK 303 Query: 311 LRAGMRT 317 LR + Sbjct: 304 LRIAEKI 310 >gi|311280938|ref|YP_003943169.1| S-adenosyl-methyltransferase MraW [Enterobacter cloacae SCF1] gi|308750133|gb|ADO49885.1| S-adenosyl-methyltransferase MraW [Enterobacter cloacae SCF1] Length = 313 Score = 366 bits (939), Expect = 4e-99, Method: Composition-based stats. Identities = 117/312 (37%), Positives = 177/312 (56%), Gaps = 19/312 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A + Sbjct: 6 KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGAEGRLLAIDRDPEATAVAN 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +FS+ FS L DY ++ +DG++ DLGVSS Q+D +RGFSF + G Sbjct: 66 TI---DDPRFSIVHGPFSALADYAAERSLTGKIDGILLDLGVSSPQLDDAERGFSFMRDG 122 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + G SA++ + A+ D+ ++ GEE+ RIA AIV+R + P T++ Sbjct: 123 PLDMRMDPTRGQSAAEWLQTADEADIAWVIKTFGEERFGKRIARAIVERNRIEPMTRTKE 182 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ +I K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L ++SF Sbjct: 183 LAEVIAAATPV-KDKHKHPATRTFQAVRIWVNSELEEIEQALKSSLDVLAPGGRLSIISF 241 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNRR 305 HSLEDR+VK+F +S + + +++ K ++P +E+VA N R Sbjct: 242 HSLEDRIVKRFMREQSRGPQVPAGLPMTEEQLRKLGGRQLRALGK--LMPGEEEVAENPR 299 Query: 306 SRSAKLRAGMRT 317 +RS+ LR RT Sbjct: 300 ARSSVLRIAERT 311 >gi|255262076|ref|ZP_05341418.1| S-adenosyl-methyltransferase MraW [Thalassiobium sp. R2A62] gi|255104411|gb|EET47085.1| S-adenosyl-methyltransferase MraW [Thalassiobium sp. R2A62] Length = 326 Score = 366 bits (939), Expect = 4e-99, Method: Composition-based stats. Identities = 154/327 (47%), Positives = 203/327 (62%), Gaps = 9/327 (2%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV-IALDRD 67 +++A H+PVLL ++ P G+ LD TFGAGGY+R G++V +DRD Sbjct: 2 VAAASSPNDAPHIPVLLRPLLVACAPVSGR-WLDGTFGAGGYTRGLIDDGADVVYGVDRD 60 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 P A + +Y ++ L + TFS L Y D +DGVV DLGVSSMQ+D +RGFSF Sbjct: 61 PLAFDMAAPWVGEYGDKIKLVEGTFSALDTYADD--LDGVVLDLGVSSMQLDLAERGFSF 118 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRMS SG SA+D+VN A+ L IL GEE+ + RIA AIVK R P T Sbjct: 119 MRDGPLDMRMSQSGPSAADIVNNADETALANILYDFGEERASRRIARAIVKAR---PLNT 175 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T +L+++I+ + K N+ HPATRSFQA+RI VN+E ELA+GL +AE+ALK GGLL V Sbjct: 176 TLELAAVIESCLPRPKPNQSHPATRSFQAIRIAVNDEYGELAEGLMAAERALKPGGLLAV 235 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPS-NAHPAVFQSITKKVVVPTQEDVAFNRRS 306 VSFHS+EDR+VK+F R+GK P A A F+ +T+K V P +++ N RS Sbjct: 236 VSFHSVEDRMVKRFMQERAGKTGRGSRYAPETEAIEAAFEIVTRKAVGPDDDELQENPRS 295 Query: 307 RSAKLRAGMRTVERSIE-DDSFVHLPR 332 RSAKLR RT S E D + +P Sbjct: 296 RSAKLRVARRTDAPSGEIDRKTIGMPG 322 >gi|256384076|gb|ACU78646.1| S-adenosyl-methyltransferase MraW [Mycoplasma mycoides subsp. capri str. GM12] gi|256384908|gb|ACU79477.1| S-adenosyl-methyltransferase MraW [Mycoplasma mycoides subsp. capri str. GM12] gi|296455289|gb|ADH21524.1| S-adenosyl-methyltransferase MraW [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 308 Score = 366 bits (939), Expect = 4e-99, Method: Composition-based stats. Identities = 103/310 (33%), Positives = 164/310 (52%), Gaps = 15/310 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 H+PVLL++ I LN P + +D T G G+S K + + A+D+D A+ + Sbjct: 3 KHIPVLLKESIEYLNIKPDGIYVDCTLGRAGHSSEILKKLNQKGFLYAIDQDQIAIDQAK 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + F L Q FS L + VDG+++DLGVSS QID RGFS++ GP Sbjct: 63 EKLEQINNNFLLIQGNFSNLSALLAINHVFNVDGILYDLGVSSPQIDIASRGFSYKMDGP 122 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + ++A V+N + ++ IL GEE + I+ IV+ R P +T +L Sbjct: 123 LDMRMDLNSTLTAHQVINTYSESQISEILFKYGEESFSKSISKKIVESR---PINSTLEL 179 Query: 192 SSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+ + + HPA ++FQALRI++NNE+ L L+ A L + + V++F Sbjct: 180 VEIIKSVLPQKVLKQKKHPAKKTFQALRIYINNELIALENSLKQALDLLNSKARICVITF 239 Query: 251 HSLEDRLVKKFF---ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 HSLE+++VK F + + + I +N + + F+ + KK + P+ ++ N RS Sbjct: 240 HSLEEKIVKNIFNNSTNYYQEQLLSNLPIKANLN-SKFKLVIKKPIKPSLLELEQNHRSH 298 Query: 308 SAKLRAGMRT 317 SAKL + Sbjct: 299 SAKLWVIEKN 308 >gi|259907409|ref|YP_002647765.1| S-adenosyl-methyltransferase MraW [Erwinia pyrifoliae Ep1/96] gi|224963031|emb|CAX54514.1| S-adenosyl-methyltransferase MraW [Erwinia pyrifoliae Ep1/96] gi|283477242|emb|CAY73151.1| S-adenosyl methionine adenyltransferase [Erwinia pyrifoliae DSM 12163] Length = 313 Score = 366 bits (939), Expect = 4e-99, Method: Composition-based stats. Identities = 123/317 (38%), Positives = 182/317 (57%), Gaps = 19/317 (5%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAV 71 H VLL++ + LN P + +D TFG GG+SR + A+DRDP A+ Sbjct: 2 QDTFKHTTVLLDEAVNGLNIKPDGIYIDGTFGRGGHSRLILSQLGEHGRLFAIDRDPQAI 61 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSF 127 + E +F++ FS L +Y +G +DG++ DLGVSS Q+D +RGFSF Sbjct: 62 AAAAEI---TDPRFTIIHGPFSALAEYAEQRGLTGKIDGILLDLGVSSPQLDDAERGFSF 118 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + GPLDMRM + G+SA++ + +A D++ +L GEE+ A RIA AIV+R + P Sbjct: 119 MRDGPLDMRMDPTRGLSAAEWLLKAEESDISFVLKTFGEERFARRIARAIVERNREQPMT 178 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T++L+ +I K+ HPATRSFQA+RI+VN+E+EE+ Q L+ A AL AGG L Sbjct: 179 RTKELADVIYAATPV-KDKFKHPATRSFQAIRIWVNSELEEIEQALKGALSALAAGGRLS 237 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVA 301 V+SFHSLEDR+VK+F +S + + A +++ K ++P + +VA Sbjct: 238 VISFHSLEDRIVKRFMREQSRGPQVPHGLPMTEAQLSSMGGRQLKALGK--MMPGESEVA 295 Query: 302 FNRRSRSAKLRAGMRTV 318 N R+RS+ LR RT Sbjct: 296 DNPRARSSVLRIAERTA 312 >gi|163782688|ref|ZP_02177685.1| hypothetical protein HG1285_17430 [Hydrogenivirga sp. 128-5-R1-1] gi|159882261|gb|EDP75768.1| hypothetical protein HG1285_17430 [Hydrogenivirga sp. 128-5-R1-1] Length = 289 Score = 366 bits (939), Expect = 4e-99, Method: Composition-based stats. Identities = 123/306 (40%), Positives = 182/306 (59%), Gaps = 24/306 (7%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76 H PVLLE+ LL G++ LD T G GG+++ + VI +DRD A+ +E Sbjct: 1 MHTPVLLEESTDLLLENSGELYLDCTLGLGGHTKRILEKNPQAFVIGIDRDEEAIEIAKE 60 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +++++ + ++++A F+ L + + +GV DG++ DLGVS Q+ +RGFSFQ PL Sbjct: 61 NLKEFEGRIAIYKADFADLDEVLRAEGVERVDGILLDLGVSMFQLK-SERGFSFQIDAPL 119 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM ++A VVN+ + K+L RIL GEE+ + +IA AIV+ R+ P +TT++L+ Sbjct: 120 DMRMDKDQKLTAYKVVNEYSEKELARILWEYGEERLSRKIARAIVQHRREKPIETTKELA 179 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 L+ ++ R HPAT++FQA+RI VN E+E L L L G L+V+SFH Sbjct: 180 ELVSSLYPARMRHGRTHPATKTFQAIRIEVNRELESLKTALGKTPDLLNPKGRLVVISFH 239 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+VK FF RS F+ +TKK ++P+QE++A N SRSAKL Sbjct: 240 SLEDRIVKNFFRDRSDA----------------FRILTKKPIIPSQEEIAMNPASRSAKL 283 Query: 312 RAGMRT 317 RAG R Sbjct: 284 RAGERI 289 >gi|157147494|ref|YP_001454813.1| S-adenosyl-methyltransferase MraW [Citrobacter koseri ATCC BAA-895] gi|263446032|sp|A8ALL4|RSMH_CITK8 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|157084699|gb|ABV14377.1| hypothetical protein CKO_03293 [Citrobacter koseri ATCC BAA-895] Length = 314 Score = 366 bits (939), Expect = 4e-99, Method: Composition-based stats. Identities = 120/312 (38%), Positives = 180/312 (57%), Gaps = 19/312 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ Q Sbjct: 7 KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSRLGEEGRLLAIDRDPQAIAEAQ 66 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +FS+ FS L DYV ++ +DG++ DLGVSS Q+D +RGFSF + G Sbjct: 67 ---AINDPRFSIIHGPFSALADYVSERELIGKIDGILLDLGVSSPQLDDAERGFSFMRDG 123 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + G SA++ + A D+ +L GEE+ A RIA AIV+R + P T++ Sbjct: 124 PLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIARAIVERNREQPMTRTKE 183 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L ++SF Sbjct: 184 LAEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSIISF 242 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305 HSLEDR+VK+F +S + + +++ K ++P +E+VA N R Sbjct: 243 HSLEDRIVKRFMREQSRGPQVPAGLPMTEEQLKKLGGRELRALGK--LMPGEEEVAENPR 300 Query: 306 SRSAKLRAGMRT 317 +RS+ LR RT Sbjct: 301 ARSSVLRIAERT 312 >gi|256827376|ref|YP_003151335.1| S-adenosyl-methyltransferase MraW [Cryptobacterium curtum DSM 15641] gi|256583519|gb|ACU94653.1| S-adenosyl-methyltransferase MraW [Cryptobacterium curtum DSM 15641] Length = 321 Score = 366 bits (939), Expect = 4e-99, Method: Composition-based stats. Identities = 114/322 (35%), Positives = 179/322 (55%), Gaps = 16/322 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALD 65 MS+ + H+PVLL + + L G+ +DAT G G+S K ++ +D Sbjct: 1 MSAVTNE--YRHIPVLLTECLDYLRLETGRTYVDATLGGAGHSIEAAKHIQTAGTLVGID 58 Query: 66 RDPFAVSCGQETM----RDYKEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQI 118 +D A++ + + D + + L + F + + + VD +FDLGVSS+QI Sbjct: 59 QDEVALTAARTRLLALPTDKRPELCLLRGNFGDMDELLLQADIPSVDAFLFDLGVSSVQI 118 Query: 119 DCGDRGFSFQKSGPLDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 D RGFSF++ PLDMRM S ++A++++N N DL RI+ +E+ A+RIA I Sbjct: 119 DTPSRGFSFKEKAPLDMRMDPGKSTLTAAEIINTYNAADLARIIRTYSDERWATRIADFI 178 Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 V+ R A +T+ L +I+ + ++ + HPA R+FQALRI VN+E++ L QGL +A Sbjct: 179 VQARTHARIETSDQLVDIIKAAIPASARRSGGHPAKRTFQALRIEVNSELDVLQQGLEAA 238 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVV 294 + L GG L V+S+HSLEDR+VK+ F S + + + + IT+K V+ Sbjct: 239 IRWLAPGGRLAVISYHSLEDRIVKETFLRFSRGCTCPPDLPVCVCGNVPIIKVITRKPVL 298 Query: 295 PTQEDVAFNRRSRSAKLRAGMR 316 PT E++ N R+RSAKLR + Sbjct: 299 PTPEEIERNPRARSAKLRVAEK 320 >gi|315125595|ref|YP_004067598.1| S-adenosyl-methyltransferase MraW [Pseudoalteromonas sp. SM9913] gi|315014108|gb|ADT67446.1| S-adenosyl-methyltransferase MraW [Pseudoalteromonas sp. SM9913] Length = 312 Score = 366 bits (939), Expect = 4e-99, Method: Composition-based stats. Identities = 123/308 (39%), Positives = 182/308 (59%), Gaps = 13/308 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 +HV VL+++ I L P + +D TFG GG+S + A+D+DP A+ Sbjct: 6 EHVSVLMDETIDALAIKPDGIYMDGTFGRGGHSGQILARLGESGRLQAIDQDPQAIKSA- 64 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E D +FS+ + FS+L + VDG++ D+GVSS Q+D RGFSF K G Sbjct: 65 EKFAD-DPRFSIAHSRFSKLYEVAEQNDLIGQVDGILLDIGVSSPQLDDAARGFSFMKDG 123 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S G SA+ + +A + D+T ++ LGEEK RIAH I++ R+ P TT+ Sbjct: 124 PLDMRMDPSTGRSAAQWLAEAELDDITHVIKKLGEEKFGKRIAHKILEVREHTPITTTKQ 183 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ L+ + V K+ HPATR+FQA+RI++N+E+EE+ L++A K LK GG L+V+SF Sbjct: 184 LADLVDEAVPV-KDKFKHPATRTFQAIRIYINSELEEIQTALQAAIKVLKPGGRLVVISF 242 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI--TKKVVVPTQEDVAFNRRSRS 308 HSLEDR+VK+F +S R + ++A ++ K + P+ ++VA N RSRS Sbjct: 243 HSLEDRIVKQFIKKQSKGEAIPRGLPLTDAQINKNLTLKAVGKAIKPSADEVARNPRSRS 302 Query: 309 AKLRAGMR 316 + LR R Sbjct: 303 SVLRIAQR 310 >gi|310765090|gb|ADP10040.1| S-adenosyl-methyltransferase MraW [Erwinia sp. Ejp617] Length = 313 Score = 366 bits (939), Expect = 4e-99, Method: Composition-based stats. Identities = 123/317 (38%), Positives = 182/317 (57%), Gaps = 19/317 (5%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAV 71 H VLL++ + LN P + +D TFG GG+SR + A+DRDP A+ Sbjct: 2 QDTFKHTTVLLDEAVNGLNIKPDGIYIDGTFGRGGHSRLILSQLGEHGRLFAIDRDPQAI 61 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSF 127 + E +F++ FS L +Y +G +DG++ DLGVSS Q+D +RGFSF Sbjct: 62 AAAAEI---TDPRFTIIHGPFSALAEYAEQRGLTGKIDGILLDLGVSSPQLDDAERGFSF 118 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + GPLDMRM + G+SA++ + +A D++ +L GEE+ A RIA AIV+R + P Sbjct: 119 MRDGPLDMRMDPTRGLSAAEWLLKAEESDISFVLKTFGEERFARRIARAIVERNREQPMT 178 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T++L+ +I K+ HPATRSFQA+RI+VN+E+EE+ Q L+ A AL AGG L Sbjct: 179 RTKELADVIYAATPV-KDKFKHPATRSFQAIRIWVNSELEEIEQALKGALSALAAGGRLS 237 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVA 301 V+SFHSLEDR+VK+F +S + + A +++ K ++P + +VA Sbjct: 238 VISFHSLEDRIVKRFMREQSRGPQVPHGLPMTEAQLSSMGGRQLKALGK--MMPGESEVA 295 Query: 302 FNRRSRSAKLRAGMRTV 318 N R+RS+ LR RT Sbjct: 296 DNPRARSSVLRIAERTA 312 >gi|269123556|ref|YP_003306133.1| S-adenosyl-methyltransferase MraW [Streptobacillus moniliformis DSM 12112] gi|268314882|gb|ACZ01256.1| S-adenosyl-methyltransferase MraW [Streptobacillus moniliformis DSM 12112] Length = 309 Score = 366 bits (939), Expect = 4e-99, Method: Composition-based stats. Identities = 104/305 (34%), Positives = 173/305 (56%), Gaps = 10/305 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H+PVL ++V+ + + +D T G GG+S S +IA+D+D A+ E Sbjct: 4 HLPVLYDEVLENIIDKKDLIYMDCTLGGGGHSEGILSNSTDNSKLIAIDQDENAIKYASE 63 Query: 77 TMRDYKEQFSLFQATFSQLQ--DYVPDK-GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ + + S+F+ F L Y+ VD ++ D+GVSS Q+D RGFS++K L Sbjct: 64 RLKKFGNKVSIFKNNFENLDIVAYLAGFDKVDRILMDIGVSSKQLDDDKRGFSYRKEAKL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S +SA +V+N +++ IL GEE ++ RIA IV+ R++ +TT +L+ Sbjct: 124 DMRMDESQKLSAYEVINNYKEEEIADILYKYGEEPKSRRIAKYIVEYRKNKSIETTIELA 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++ K + K+ + HPA R+FQA+RI+VN E+E L + L + + L GG L+V++FHS Sbjct: 184 DIVIKAI--GKSMKKHPAKRTFQAIRIYVNRELEVLEKALDKSIELLNPGGRLLVITFHS 241 Query: 253 LEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK+ F I + + + +T+K +V ++++ N R+ SAKL Sbjct: 242 LEDRIVKEKFRKYENPCTCPYDLPICKCGNKSKGKVLTRKPIVSKEKELEANNRAHSAKL 301 Query: 312 RAGMR 316 R ++ Sbjct: 302 RVFIK 306 >gi|83648530|ref|YP_436965.1| S-adenosyl-methyltransferase MraW [Hahella chejuensis KCTC 2396] gi|123530830|sp|Q2S9Y4|RSMH_HAHCH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|83636573|gb|ABC32540.1| S-adenosyl-methyltransferase MraW [Hahella chejuensis KCTC 2396] Length = 309 Score = 365 bits (938), Expect = 5e-99, Method: Composition-based stats. Identities = 116/304 (38%), Positives = 172/304 (56%), Gaps = 10/304 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 HV VLL + + L + +D TFG GG+S K ++ +D+DP A E Sbjct: 8 HVTVLLAEAVEALGVKADGLYIDGTFGRGGHSAEILKALGPQGRLLGIDKDPRARRTAME 67 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++F Q +F+ + +V + GVDGV+ DLGVSS Q+D +RGFSF + GPL Sbjct: 68 RFSG-DDRFLFRQGSFADMASFVSELQWPGVDGVLLDLGVSSPQLDEAERGFSFMQDGPL 126 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM SG+SAS+ VN A ++++++L LGEE+ A R+A AIV RQ+ P T L+ Sbjct: 127 DMRMDPDSGLSASEWVNTAKEEEISKVLWDLGEERFARRMAKAIVAARQTQPITRTLQLA 186 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++ +PATR+FQA+RIF+N E+++LAQGL A LK GG L V+SFHS Sbjct: 187 EIVAAANP-RWEKGKNPATRAFQAIRIFINRELDDLAQGLEQAFGVLKPGGRLTVISFHS 245 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK++ + + + P + + KK + + +V N R+RSA +R Sbjct: 246 LEDRMVKQYMRDIVRGPKTPKWLPVVDDAPPKAKLVGKK-IRAGETEVVANVRARSAVMR 304 Query: 313 AGMR 316 + Sbjct: 305 VLEK 308 >gi|212697080|ref|ZP_03305208.1| hypothetical protein ANHYDRO_01645 [Anaerococcus hydrogenalis DSM 7454] gi|212675855|gb|EEB35462.1| hypothetical protein ANHYDRO_01645 [Anaerococcus hydrogenalis DSM 7454] Length = 306 Score = 365 bits (938), Expect = 5e-99, Method: Composition-based stats. Identities = 116/306 (37%), Positives = 164/306 (53%), Gaps = 12/306 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H VLL + I LN + D T G GG+S+ K S +I LD+D A+ +E Sbjct: 5 HKSVLLNETIKNLNIKEDGIYADLTLGKGGHSKEILKNLSPEGLLIGLDQDKDAIKAARE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++D+ F F ++ D + +DG + D+GVSS QID GDRGFS+ K GPL Sbjct: 65 NLKDF-SNVLFFNENFEKISDVLDKASLKMIDGALMDIGVSSYQIDNGDRGFSYMKDGPL 123 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ + ++A +VN ++ +L I GEE+ + IA AIV R+ TT L Sbjct: 124 DMRMNKDNELTAKQIVNDYSLDELWEIFSKYGEERYSKTIAKAIVDYRKLHEINTTLQLR 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +++ K+V N HP R FQALRI VN E+E L L L GG L V++FHS Sbjct: 184 NIVMKSVVT---NEAHPEKRVFQALRIEVNRELEVLENTLEKIVDRLNKGGRLCVITFHS 240 Query: 253 LEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK F S K + + H + I+KK ++P+++++ NRRS SAKL Sbjct: 241 LEDRIVKNKFKEMSKKCICPPEFPVCVCNHEKKVKIISKKPILPSKDELKTNRRSHSAKL 300 Query: 312 RAGMRT 317 R R Sbjct: 301 RVCERV 306 >gi|322713140|gb|EFZ04711.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 312 Score = 365 bits (938), Expect = 5e-99, Method: Composition-based stats. Identities = 120/312 (38%), Positives = 181/312 (58%), Gaps = 19/312 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ Q Sbjct: 5 KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAQ 64 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +FS+ FS L DYV ++ +DG++ DLGVSS Q+D +RGFSF + G Sbjct: 65 TI---NDPRFSIIHGPFSALADYVAEREFTGKIDGILLDLGVSSPQLDDAERGFSFMRDG 121 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + G SA++ + A D+ +L GEE+ A RIA AIV+R + P T++ Sbjct: 122 PLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIARAIVERNREQPMTRTKE 181 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L ++SF Sbjct: 182 LAEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSIISF 240 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305 HSLEDR+VK+F +S + + A +++ K ++P +++VA N R Sbjct: 241 HSLEDRIVKRFMREQSRGPQVPAGLPMTEAQLKKLGGRELRALGK--LMPGEKEVAENPR 298 Query: 306 SRSAKLRAGMRT 317 +RS+ LR RT Sbjct: 299 ARSSVLRIAERT 310 >gi|161507311|ref|YP_001577265.1| cell division protein MraW [Lactobacillus helveticus DPC 4571] gi|263458154|sp|A8YUN6|RSMH_LACH4 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|160348300|gb|ABX26974.1| Cell division protein MraW [Lactobacillus helveticus DPC 4571] Length = 315 Score = 365 bits (938), Expect = 5e-99, Method: Composition-based stats. Identities = 104/311 (33%), Positives = 163/311 (52%), Gaps = 13/311 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76 H VLL + I L P G + +DATFG GG+++ ++ D+D +A+ + Sbjct: 4 KHTSVLLHETIDNLKPKNGGLYVDATFGGGGHAKYLLSKIETGTLVGFDQDEYAIKSAEL 63 Query: 77 TMRDY-----KEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSF 127 D + + L FS L+ + G+DG+ +DLGVSS Q D DRGFS+ Sbjct: 64 NFADLLQPDSEPRLKLVHDNFSNLEQDLVKLGYSDGIDGIYYDLGVSSPQFDQADRGFSY 123 Query: 128 QKSGPLDMRMSCSGIS-ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + + LDMRM S + A +VN + K+L IL G+EK + +IAH IV+RR+ P Sbjct: 124 RYNARLDMRMDQSQDTDAYQLVNTLSQKELADILYQYGDEKFSRQIAHRIVERRKDKPIV 183 Query: 187 TTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT +L +I++ + ++ HPA +SFQALR+ VN+E++ L L A + L+ GG + Sbjct: 184 TTFELVDIIKEAIPAYARRTGGHPAKKSFQALRVAVNHELDVLQASLEEAIRILRPGGRI 243 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V++F S ED++VKK F S + + + +K + + ++ N R Sbjct: 244 SVITFQSHEDKIVKKIFKKYSEVEVPRGMPFVPDDMKPTLRLENRKPITASTSELENNNR 303 Query: 306 SRSAKLRAGMR 316 S SAKLR + Sbjct: 304 SHSAKLRVAEK 314 >gi|84516398|ref|ZP_01003757.1| S-adenosyl-methyltransferase MraW [Loktanella vestfoldensis SKA53] gi|84509434|gb|EAQ05892.1| S-adenosyl-methyltransferase MraW [Loktanella vestfoldensis SKA53] Length = 326 Score = 365 bits (938), Expect = 5e-99, Method: Composition-based stats. Identities = 148/326 (45%), Positives = 202/326 (61%), Gaps = 11/326 (3%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRD 67 MS+A T H+PVL+ +IA + P V LD TFG GGY+R+ G++ VIA+DRD Sbjct: 1 MSAAADQT--PHIPVLIRPLIAAVGPVT-GVWLDGTFGNGGYTRALLAAGAHKVIAVDRD 57 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 P A + DY ++ + + FSQL Y D +DGVV DLGVSSMQ+D +RGFSF Sbjct: 58 PLAFQMAAGWVADYGDRIVMQEGVFSQLDTYAQD--LDGVVLDLGVSSMQLDLAERGFSF 115 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRMS SG+SA+D+ N A +L I+ + GEE+ + RIA AIV R P T Sbjct: 116 MRDGPLDMRMSQSGLSAADLCNDAEEAELADIIYLYGEERASRRIAKAIVAAR---PLTT 172 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T L+ +++ + +K N+ HPATR+FQALRI VNNE ELA GL +AE+ALK GG L V Sbjct: 173 TGQLAKIVESCLPRAKPNQSHPATRTFQALRIAVNNEYGELAMGLMAAERALKPGGQLAV 232 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRS 306 V+FHS+EDR+ K+F +RSG P F+ +K + P ++++A N RS Sbjct: 233 VTFHSVEDRMAKRFLQARSGNNANANRYAPETTQVTPAFRIDKRKAIGPDEQELAENPRS 292 Query: 307 RSAKLRAGMRTVERSIE-DDSFVHLP 331 RSAKLR +RT + D + + +P Sbjct: 293 RSAKLRVAIRTDAPAQSLDPADLGMP 318 >gi|262831458|sp|Q1J5F8|RSMH_STRPF RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 316 Score = 365 bits (938), Expect = 5e-99, Method: Composition-based stats. Identities = 103/320 (32%), Positives = 169/320 (52%), Gaps = 15/320 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M+ H HV VLL + + +L+ P + +DAT G G+S ++ D Sbjct: 1 MTKEFH-----HVTVLLHETVDMLDIKPNGIYVDATLGGSGHSAYLLSKLSEQGHLYCFD 55 Query: 66 RDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDC 120 +D A+ Q T++ Y K Q + + F L+ + GVD G+++DLGVSS Q+D Sbjct: 56 QDQKAIDNAQVTLKSYIDKGQVTFIKDNFRHLKARLTALGVDEIDGILYDLGVSSPQLDE 115 Query: 121 GDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS+++ PLDMRM + +A +VVN DL +I GE+K + +IA I + Sbjct: 116 RERGFSYKQDAPLDMRMDRQSLLTAYEVVNTYPFNDLVKIFFKYGEDKFSKQIARKIEQA 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R P +TT +L+ LI+ + + HPA + FQA+RI VN+E+ + ++ A + Sbjct: 176 RAIKPIETTTELAELIKAAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQDAMEL 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L G + V++FHSLEDRL K+ F S + + F+ +++K ++P+ Sbjct: 236 LALDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPLIPEDMKPTFELVSRKPILPSHS 295 Query: 299 DVAFNRRSRSAKLRAGMRTV 318 ++ N+R+ SAKLR + Sbjct: 296 ELTANKRAHSAKLRVAKKIR 315 >gi|16763510|ref|NP_459125.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167550685|ref|ZP_02344442.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167989993|ref|ZP_02571093.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168230399|ref|ZP_02655457.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168234884|ref|ZP_02659942.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168243465|ref|ZP_02668397.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168262195|ref|ZP_02684168.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168820886|ref|ZP_02832886.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194449989|ref|YP_002044090.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194469862|ref|ZP_03075846.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194735661|ref|YP_002113138.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197248687|ref|YP_002145106.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|198243393|ref|YP_002214072.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200386674|ref|ZP_03213286.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205351459|ref|YP_002225260.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207855634|ref|YP_002242285.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224581963|ref|YP_002635761.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238911177|ref|ZP_04655014.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|20139016|sp|Q8ZRU8|RSMH_SALTY RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262826349|sp|B5F7V6|RSMH_SALA4 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262826360|sp|B5FI64|RSMH_SALDC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262826371|sp|B5R2L6|RSMH_SALEP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262826385|sp|B5RH56|RSMH_SALG2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262826391|sp|B4TJ79|RSMH_SALHS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262826413|sp|C0Q5H8|RSMH_SALPC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262826460|sp|B4TXH0|RSMH_SALSV RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|16418619|gb|AAL19084.1| putative S-adenosyl methionine adenyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|194408293|gb|ACF68512.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194456226|gb|EDX45065.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194711163|gb|ACF90384.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197212390|gb|ACH49787.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197292032|gb|EDY31382.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197937909|gb|ACH75242.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199603772|gb|EDZ02317.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205271240|emb|CAR36028.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205324445|gb|EDZ12284.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205331448|gb|EDZ18212.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205335013|gb|EDZ21777.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205337535|gb|EDZ24299.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205342387|gb|EDZ29151.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205348778|gb|EDZ35409.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206707437|emb|CAR31710.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224466490|gb|ACN44320.1| S-adenosyl-methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261245353|emb|CBG23142.1| S-adenosyl-methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267991798|gb|ACY86683.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301156748|emb|CBW16223.1| S-adenosyl-methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911089|dbj|BAJ35063.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321222306|gb|EFX47378.1| rRNA small subunit methyltransferase H [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323128440|gb|ADX15870.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|326621816|gb|EGE28161.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326626486|gb|EGE32829.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332987073|gb|AEF06056.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 313 Score = 365 bits (938), Expect = 5e-99, Method: Composition-based stats. Identities = 120/312 (38%), Positives = 181/312 (58%), Gaps = 19/312 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ Q Sbjct: 6 KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAQ 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +FS+ FS L DYV ++ +DG++ DLGVSS Q+D +RGFSF + G Sbjct: 66 TI---NDPRFSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFMRDG 122 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + G SA++ + A D+ +L GEE+ A RIA AIV+R + P T++ Sbjct: 123 PLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIARAIVERNREQPMTRTKE 182 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L ++SF Sbjct: 183 LAEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSIISF 241 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305 HSLEDR+VK+F +S + + A +++ K ++P +++VA N R Sbjct: 242 HSLEDRIVKRFMREQSRGPQVPAGLPMTEAQLKKLGGRELRALGK--LMPGEKEVAENPR 299 Query: 306 SRSAKLRAGMRT 317 +RS+ LR RT Sbjct: 300 ARSSVLRIAERT 311 >gi|77460902|ref|YP_350409.1| S-adenosyl-methyltransferase MraW [Pseudomonas fluorescens Pf0-1] gi|88909213|sp|Q3K736|RSMH_PSEPF RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|77384905|gb|ABA76418.1| S-adenosyl-methyltransferase [Pseudomonas fluorescens Pf0-1] Length = 315 Score = 365 bits (938), Expect = 5e-99, Method: Composition-based stats. Identities = 117/308 (37%), Positives = 178/308 (57%), Gaps = 12/308 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 +H+ VLL++ + L P LD TFG GG+SR +I D+DP A++ G Sbjct: 8 NHITVLLDEAVEALAVRPDGCYLDGTFGRGGHSRLILSKLGPDGRLIGFDKDPQAIATG- 66 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +T+ +F + Q +F++L V ++G V G++ DLGVSS Q+D +RGFSF G Sbjct: 67 QTLAAEDGRFVVVQRSFAELGSVVAERGLTGKVSGILLDLGVSSPQLDDAERGFSFLNDG 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S GISA++ VN A V+++ R+ GEE+ + R+A A+V+RR PF+ T D Sbjct: 127 PLDMRMDPSRGISAAEFVNTAPVEEIARVFKEYGEERFSGRMARAVVERRDVTPFERTAD 186 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ +++ + + +PATR+FQ LRI VNNE+ +L GL +A + L+ GG L+V+SF Sbjct: 187 LAEVLKVANPAWEKGK-NPATRAFQGLRIQVNNELGDLEAGLEAALECLEVGGRLVVISF 245 Query: 251 HSLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFNRRSRS 308 HSLEDR+VK F G+ + +P + + K + ++ N RSRS Sbjct: 246 HSLEDRIVKLFMRKLVKGEADNLPRNLPVRHVAFEPKIKVHGKAQTASDAELKANPRSRS 305 Query: 309 AKLRAGMR 316 A +R + Sbjct: 306 AVMRVAEK 313 >gi|91791714|ref|YP_561365.1| S-adenosyl-methyltransferase MraW [Shewanella denitrificans OS217] gi|123061331|sp|Q12SD4|RSMH_SHEDO RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|91713716|gb|ABE53642.1| methyltransferase [Shewanella denitrificans OS217] Length = 313 Score = 365 bits (938), Expect = 5e-99, Method: Composition-based stats. Identities = 116/307 (37%), Positives = 173/307 (56%), Gaps = 13/307 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H+ VLL++ + LN P + +D TFG GG+SR +IA+DRDP A+ ++ Sbjct: 7 HLSVLLKETVDGLNIQPDGIYIDGTFGRGGHSRHVLSHLGPNGRLIAIDRDPQAIEAAKQ 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 D +F + F QL DYV + G +DGV+ DLGVSS Q+D +RGFSF + GP Sbjct: 67 FADD--PRFQIVHGGFGQLADYVAELGLVGKIDGVLLDLGVSSPQLDDAERGFSFLRDGP 124 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G +A+ + +A ++D+ + GEEK + IA I R+ PF T+DL Sbjct: 125 LDMRMDNSQGQTAAQWIARAEIEDMAWVFKTYGEEKNSRHIARCIAADREKTPFLRTKDL 184 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI + + N+ HPATR FQA+RI++N+E+E++ Q L A L G + ++SFH Sbjct: 185 ADLIARITKNKERNK-HPATRVFQAIRIYINSELEQIDQALEGAVNVLAPHGRMSIISFH 243 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI--TKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK+F S + + A + + K + P++ +V N R+RS+ Sbjct: 244 SLEDRMVKRFMRRHSQGESVPHGLPITEAEINKSKKLKTLGKAMKPSEIEVEQNPRARSS 303 Query: 310 KLRAGMR 316 LR R Sbjct: 304 VLRVAER 310 >gi|292490616|ref|YP_003526055.1| S-adenosyl-methyltransferase MraW [Nitrosococcus halophilus Nc4] gi|291579211|gb|ADE13668.1| S-adenosyl-methyltransferase MraW [Nitrosococcus halophilus Nc4] Length = 317 Score = 365 bits (938), Expect = 5e-99, Method: Composition-based stats. Identities = 121/316 (38%), Positives = 179/316 (56%), Gaps = 10/316 (3%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M+ H PVLL +VI L + +DATFG GG++++ ++ +D Sbjct: 1 MAPMDEKETLTHQPVLLREVIQALAIRRDGLYVDATFGRGGHAQAILDALSSEGRLLGVD 60 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCG 121 +DP A+ + +FS+ QA+ +L V ++G V+GV+FDLGVSS Q++ Sbjct: 61 KDPEAI-AAGRILAQQDRRFSIVQASIGELARVVAEQGWLKRVNGVLFDLGVSSPQLENA 119 Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 RGFSF + GPLDMRM+ + G SA++ + A K++ +L GEE+ RIA AIV+ R Sbjct: 120 KRGFSFLQDGPLDMRMNPAVGQSAAEWLASATEKEIAAVLKTYGEERFCRRIARAIVQAR 179 Query: 181 QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 + P T+ L+ ++ K + R HPATRSFQA+RIF+NNE+EEL L A L Sbjct: 180 EINPLTRTKQLAEVVAKANPSWEPGR-HPATRSFQAIRIFINNELEELRAALEQAVTVLA 238 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300 G L+V+SFHSLEDR+VK+FF +S + H + K++ PT E+V Sbjct: 239 VKGRLVVISFHSLEDRMVKRFFRQKSRGEDLPPDLPVMQDHFQASLQVLGKLIWPTPEEV 298 Query: 301 AFNRRSRSAKLRAGMR 316 + N R+RSA+LR + Sbjct: 299 SRNPRARSARLRVAEK 314 >gi|188532894|ref|YP_001906691.1| S-adenosyl-methyltransferase MraW [Erwinia tasmaniensis Et1/99] gi|263447020|sp|B2VD83|RSMH_ERWT9 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|188027936|emb|CAO95793.1| S-adenosyl-methyltransferase MraW [Erwinia tasmaniensis Et1/99] Length = 313 Score = 365 bits (938), Expect = 5e-99, Method: Composition-based stats. Identities = 122/317 (38%), Positives = 181/317 (57%), Gaps = 19/317 (5%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAV 71 H H VLL++ + LN + +D TFG GG+SR + A+DRDP A+ Sbjct: 2 HDTFKHTTVLLDEAVNGLNIKSDGIYIDGTFGRGGHSRLILSQLGEHGRLYAIDRDPQAI 61 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSF 127 + E +F++ FS L +Y ++G +DG++ DLGVSS Q+D +RGFSF Sbjct: 62 AAAAEI---TDPRFTIIHGPFSALAEYAEERGLKGKIDGILLDLGVSSPQLDDAERGFSF 118 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + GPLDMRM + G SA++ + +A D+ +L GEE+ A RIA AIV+R + P Sbjct: 119 MRDGPLDMRMDPTRGQSAAEWLLKAEESDIAFVLKTFGEERFAKRIARAIVERNREQPMT 178 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T++L+ +I K+ HPATRSFQA+RI+VN+E+EE+ Q L+ A AL AGG L Sbjct: 179 RTKELADVIYAATPV-KDKFKHPATRSFQAIRIWVNSELEEIEQALKGALSALTAGGRLS 237 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVA 301 ++SFHSLEDR+VK+F +S + + A +++ K ++P + +VA Sbjct: 238 IISFHSLEDRIVKRFMREQSRGPQIPHGLPMTEAQLSSLGGRQLKALGK--MMPGESEVA 295 Query: 302 FNRRSRSAKLRAGMRTV 318 N R+RS+ LR RT Sbjct: 296 DNPRARSSVLRIAERTA 312 >gi|227893331|ref|ZP_04011136.1| S-adenosyl-methyltransferase [Lactobacillus ultunensis DSM 16047] gi|227864746|gb|EEJ72167.1| S-adenosyl-methyltransferase [Lactobacillus ultunensis DSM 16047] Length = 330 Score = 365 bits (938), Expect = 5e-99, Method: Composition-based stats. Identities = 107/311 (34%), Positives = 165/311 (53%), Gaps = 13/311 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76 H VLL + I L P G + +DATFG GG++R ++ D+D +A+ + Sbjct: 19 KHTSVLLHETIDNLKPKDGGLYVDATFGGGGHARYLLSKIDSGTLVGFDQDEYAIKSAKL 78 Query: 77 TMRDY-----KEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSF 127 D + + L FS LQ+ + + G+DG+ +DLGVSS Q D DRGFS+ Sbjct: 79 NFADLLEPDSEPKLKLVHDNFSNLQNDLVELGYTDGIDGIYYDLGVSSPQFDQADRGFSY 138 Query: 128 QKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + + LDMRM S + A +VN + K+L IL G+EK + +IAH I++RR+ P Sbjct: 139 RYNARLDMRMDQSQDLDAYQLVNDLSQKELADILYQYGDEKFSRQIAHRIIERRKDKPIV 198 Query: 187 TTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT +L +I+ + ++ HPA +SFQALR+ VN E++ L L A K L+ GG + Sbjct: 199 TTFELVDIIKDAIPAYARRTGGHPAKKSFQALRVAVNRELDVLQASLEEAIKILRPGGRI 258 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V++F S ED++VKK F S + + + + +K + + ++ N R Sbjct: 259 SVITFQSHEDKIVKKIFKKYSEVEIPRGMPFVPDDLKPMLCLVNRKPITASTSELENNNR 318 Query: 306 SRSAKLRAGMR 316 SRSAKLR + Sbjct: 319 SRSAKLRIAKK 329 >gi|332187132|ref|ZP_08388872.1| S-adenosyl-methyltransferase MraW [Sphingomonas sp. S17] gi|332012832|gb|EGI54897.1| S-adenosyl-methyltransferase MraW [Sphingomonas sp. S17] Length = 326 Score = 365 bits (938), Expect = 5e-99, Method: Composition-based stats. Identities = 136/316 (43%), Positives = 199/316 (62%), Gaps = 10/316 (3%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDP 68 MS A++ H+PVLL++V+ L PG+ +D TFGAGGY+R+ G+ VIA DRDP Sbjct: 1 MSPAVND--APHIPVLLDEVLDALAILPGETHVDGTFGAGGYTRAMLGRGAKVIAFDRDP 58 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 A++ GQ ++ +L FS L + + VDGVV D+GVSSMQ+D +RGFSFQ Sbjct: 59 DAIANGQALIQAEPG-LALVHREFSGLDQALEAQ-VDGVVLDIGVSSMQLDQAERGFSFQ 116 Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM+ +G SA+D +N A+ + +L GEE ++ R+A AIV R P T Sbjct: 117 GDGPLDMRMAQAGESAADFLNTADEAAIADVLYHYGEEPRSRRVAQAIVAAR---PLMRT 173 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L++++++ + + +++ PATR+FQA+RI VN E+EELA+GL +AE+ALK GG L +V Sbjct: 174 GELAAVVRRALGYRPHDKKDPATRTFQAIRIHVNRELEELAEGLAAAERALKPGGRLAIV 233 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITKKVVVPTQEDVAFNRRS 306 +FHSLEDR+VK+FF R+G++ +P A F ++ K V ++A N R+ Sbjct: 234 TFHSLEDRMVKRFFRERAGQLPGGSRHLPQQVAAQAPSFTAV-GKAVRAGAAELARNPRA 292 Query: 307 RSAKLRAGMRTVERSI 322 RSA LR RT + Sbjct: 293 RSATLRFATRTESPAW 308 >gi|49084936|gb|AAT51240.1| PA4420 [synthetic construct] Length = 314 Score = 365 bits (938), Expect = 5e-99, Method: Composition-based stats. Identities = 121/313 (38%), Positives = 181/313 (57%), Gaps = 14/313 (4%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAV 71 + H+ VLLE+ ++ L P LD TFG GG+SR+ + G ++ D+DP A+ Sbjct: 2 NATYRHITVLLEEAVSALAPREDGCYLDGTFGRGGHSRALLEKLGAGGRLLGFDKDPQAI 61 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSF 127 G + + +F + Q +F++L D V +G VDGV+ DLGVSS Q+D +RGFSF Sbjct: 62 QTG-KALAAEDGRFVIVQRSFAELGDEVRARGLEGRVDGVLLDLGVSSPQLDDPERGFSF 120 Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 GPLDMRM+ GISA++ + A +++ R+ GEE+ A R+A AIV+RRQ PF+ Sbjct: 121 LNDGPLDMRMNPGQGISAAEFIANATEEEIARVFKEYGEERFAKRMARAIVQRRQERPFE 180 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T DL+ +I + + +PATR+FQ LRI VNNE+ +L +GL +A ++L GG L+ Sbjct: 181 RTADLAEVITVANPAWEKGK-NPATRAFQGLRIHVNNELGDLERGLDAALESLAVGGRLV 239 Query: 247 VVSFHSLEDRLVKKFFASRSG---KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 V+SFHSLEDR+VK F + + I S + + K ++E++ N Sbjct: 240 VISFHSLEDRIVKLFMRKHAKGEADNLPRDLPIRSKVFEPRLKLL-GKPQYASEEELKAN 298 Query: 304 RRSRSAKLRAGMR 316 RSRSA +R + Sbjct: 299 PRSRSAVMRVAEK 311 >gi|239947593|ref|ZP_04699346.1| S-adenosyl-methyltransferase MraW [Rickettsia endosymbiont of Ixodes scapularis] gi|241068474|ref|XP_002408444.1| S-adenosyl-methyltransferase mraw, putative [Ixodes scapularis] gi|215492432|gb|EEC02073.1| S-adenosyl-methyltransferase mraw, putative [Ixodes scapularis] gi|239921869|gb|EER21893.1| S-adenosyl-methyltransferase MraW [Rickettsia endosymbiont of Ixodes scapularis] Length = 307 Score = 365 bits (938), Expect = 5e-99, Method: Composition-based stats. Identities = 127/307 (41%), Positives = 185/307 (60%), Gaps = 5/307 (1%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI-ALDRDPFAVSCGQ 75 I HV V+L +++ L+P G+ LD TFGAGGYS++ + I ALDRDP + + Sbjct: 2 IQSHVSVMLNEMLEALSPKDGESYLDCTFGAGGYSKAILESYDCYITALDRDPNVIKRAE 61 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 E ++Y E+F + F+ + K DG+V DLGVSSMQ+D DRGFSF GPLDM Sbjct: 62 EIKQNYGERFDFIETNFADSFTKLKKKKFDGIVLDLGVSSMQLDIADRGFSFLHDGPLDM 121 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RMS G++A + VN A K+L ++ G+E + RIA IV+ R++A +T L+ ++ Sbjct: 122 RMSGQGLNAEEFVNTAEEKELADVIYKYGDESFSRRIARRIVEYRKTARIDSTDKLAEIV 181 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + ++ F K +I PAT++FQA+RI++N+E+ EL + L + + LK G L+VVSFHSLED Sbjct: 182 RNSIGFRK-GKIDPATKTFQAIRIYINDELGELERFLANVKNILKKDGRLVVVSFHSLED 240 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNA---HPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 R+VK FF S K +A + + IT K + P+ ++V N R+RSAKLR Sbjct: 241 RIVKNFFKENSEKPVARSKYAKDDMAIDPDKWLKIITNKALAPSDKEVGLNIRARSAKLR 300 Query: 313 AGMRTVE 319 A E Sbjct: 301 AAKAIYE 307 >gi|109914373|sp|Q5XAL3|RSMH_STRP6 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 316 Score = 365 bits (938), Expect = 6e-99, Method: Composition-based stats. Identities = 104/320 (32%), Positives = 170/320 (53%), Gaps = 15/320 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 M+ H HV VLL + + +L+ P + +DAT G G+S ++ D Sbjct: 1 MTKEFH-----HVTVLLHETVDMLDIKPDGIYVDATLGGSGHSAYLLSKLGEEGHLYCFD 55 Query: 66 RDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDC 120 +D A+ Q T++ Y K Q + + F L+ + GVD G+++DLGVSS Q+D Sbjct: 56 QDQKAIDNAQVTLKSYIDKGQVTFIKDNFRHLKARLTALGVDEIDGILYDLGVSSPQLDE 115 Query: 121 GDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS+++ PLDMRM + +A +VVN DL +I GE+K + +IA I + Sbjct: 116 RERGFSYKQDAPLDMRMDRQSLLTAYEVVNTYPFNDLVKIFFKYGEDKFSKQIARKIEQA 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R P +TT +L+ LI+ + + HPA + FQA+RI VN+E+ + ++ A + Sbjct: 176 RAIKPIETTTELAELIKAAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQEAMEL 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L G + V++FHSLEDRL K+ F S + + F+ +++K ++P+ Sbjct: 236 LALDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPLIPEDMKPKFELVSRKPILPSHS 295 Query: 299 DVAFNRRSRSAKLRAGMRTV 318 ++A N+R+ SAKLR + Sbjct: 296 ELAANKRAHSAKLRVAKKIR 315 >gi|226355756|ref|YP_002785496.1| S-adenosyl-methyltransferase MraW [Deinococcus deserti VCD115] gi|263447379|sp|C1D1L8|RSMH_DEIDV RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|226317746|gb|ACO45742.1| putative Methyltransferase [Deinococcus deserti VCD115] Length = 300 Score = 365 bits (938), Expect = 6e-99, Method: Composition-based stats. Identities = 128/316 (40%), Positives = 179/316 (56%), Gaps = 27/316 (8%) Query: 9 MSSAIHHTIGD---HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALD 65 M+ T + H VL +V+ L P PGK I+D T G G++R + G++V +D Sbjct: 1 MTLPEDTTTAESLIHTSVLSAEVLEALAPTPGKTIVDGTLGGAGHTRLLLEAGAHVYGID 60 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGD 122 +DPFA+ +E ++ Q + + + GV DG++ D+GVSS Q+D Sbjct: 61 QDPFALDRARE---AGLPNLTVLQGNYRDMVSLLEQAGVSQVDGILLDIGVSSFQLDDAG 117 Query: 123 RGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 RGFS+ PLDMRMS SG SA+DVVN +DL I+ GE++ + RIA AI + RQ Sbjct: 118 RGFSYHTEAPLDMRMSQSGESAADVVNTYEEEDLAAIIYEYGEDRLSRRIARAIGQARQK 177 Query: 183 APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 AP +TT L+ ++++ + IHPA R+FQALRI VN+E+ L GL++AE L+ G Sbjct: 178 APIETTVQLAEIVKRAYP-GFSKGIHPARRTFQALRIHVNDELGALRDGLQAAETLLRPG 236 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G L V+SFHSLEDR+VK+F V Q +TK+ VV + E+ A Sbjct: 237 GRLAVISFHSLEDRIVKRFLLGSE-----------------VLQPLTKRPVVASDEEQAI 279 Query: 303 NRRSRSAKLRAGMRTV 318 N RSRSAKLRA R V Sbjct: 280 NPRSRSAKLRAAERVV 295 >gi|256841653|ref|ZP_05547159.1| MraW methylase [Parabacteroides sp. D13] gi|301310871|ref|ZP_07216800.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 20_3] gi|256736547|gb|EEU49875.1| MraW methylase [Parabacteroides sp. D13] gi|300830934|gb|EFK61575.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 20_3] Length = 305 Score = 365 bits (937), Expect = 6e-99, Method: Composition-based stats. Identities = 109/306 (35%), Positives = 166/306 (54%), Gaps = 17/306 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HVPV+L + + L+ P + +D TFG GG+SR K G + D+D A Sbjct: 9 HVPVMLRESLEGLDIRPDGIYVDVTFGGGGHSREILKRLGSGGELYGFDQDADAEHNI-- 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +F+ ++ F L +++ G VDG++ DLGVSS D DRGFSF+ G Sbjct: 67 ---PADPRFTFVRSNFRYLYNFMRYYGESGEVDGLLADLGVSSHHFDDKDRGFSFRFDGT 123 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ +G +A+D+VN + L + + GE K + ++A +VK R++ +T D Sbjct: 124 LDMRMNTRAGQTAADIVNNYTAEALADVFYLYGELKVSRKLASVLVKARETKKIETIGDF 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ K+ + FQALRI VN+E+ L + LRS + L+ GG L+V+++H Sbjct: 184 LEVIKPFT--GKDKEKKFLAQVFQALRIEVNDEMRALKEMLRSTLRVLRPGGRLVVITYH 241 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDRLVK F + + + + + P F+ + KV+VPT E+V N RSRSAKL Sbjct: 242 SLEDRLVKNFLKTGNFEGKCEQDFFGNVRSP--FRLVNNKVIVPTDEEVERNPRSRSAKL 299 Query: 312 RAGMRT 317 R + Sbjct: 300 RIAEKV 305 >gi|197265544|ref|ZP_03165618.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197243799|gb|EDY26419.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 313 Score = 365 bits (937), Expect = 6e-99, Method: Composition-based stats. Identities = 121/312 (38%), Positives = 182/312 (58%), Gaps = 19/312 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ Q Sbjct: 6 KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAQ 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +FS+ FS L DYV ++ +DG++ DLGVSS Q+D +RGFSF + G Sbjct: 66 TI---NDPRFSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFMRDG 122 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + G SA++ + A D+ +L GEE+ A RIAHAIV+R + P T++ Sbjct: 123 PLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIAHAIVERNREQPMTRTKE 182 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L ++SF Sbjct: 183 LAEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSIISF 241 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305 HSLEDR+VK+F +S + + A +++ K ++P +++VA N R Sbjct: 242 HSLEDRIVKRFMREQSRGPQVPAGLPMTEAQLKKLGGRELRALGK--LMPGEKEVAENPR 299 Query: 306 SRSAKLRAGMRT 317 +RS+ LR RT Sbjct: 300 ARSSVLRIAERT 311 >gi|26246015|ref|NP_752054.1| S-adenosyl-methyltransferase MraW [Escherichia coli CFT073] gi|300981119|ref|ZP_07175365.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 45-1] gi|30173069|sp|Q8FL68|RSMH_ECOL6 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|26106412|gb|AAN78598.1|AE016755_98 S-adenosyl-methyltransferase mraW [Escherichia coli CFT073] gi|300409021|gb|EFJ92559.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 45-1] gi|315294723|gb|EFU54066.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 153-1] Length = 313 Score = 365 bits (937), Expect = 6e-99, Method: Composition-based stats. Identities = 118/312 (37%), Positives = 178/312 (57%), Gaps = 19/312 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ + Sbjct: 6 KHFTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +FS+ FS L +YV D+ +DG++ DLGVSS Q+D +RGFSF + G Sbjct: 66 TI---DDPRFSIIHGPFSALGEYVADRDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDG 122 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + G SA++ + A D+ +L GEE+ A RIA AIV+ + P T++ Sbjct: 123 PLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVEHNREQPMTRTKE 182 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L ++SF Sbjct: 183 LAEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLHVLAPGGRLSIISF 241 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305 HSLEDR+VK+F S + + +++ K ++P +E+VA N R Sbjct: 242 HSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGK--LMPGEEEVAENPR 299 Query: 306 SRSAKLRAGMRT 317 +RS+ LR RT Sbjct: 300 ARSSVLRIAERT 311 >gi|161612464|ref|YP_001586429.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|204927221|ref|ZP_03218423.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|262826399|sp|A9MZL1|RSMH_SALPB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|161361828|gb|ABX65596.1| hypothetical protein SPAB_00154 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|204323886|gb|EDZ09081.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|322615941|gb|EFY12858.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620725|gb|EFY17585.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623923|gb|EFY20760.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627371|gb|EFY24162.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322630678|gb|EFY27442.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638102|gb|EFY34803.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640588|gb|EFY37239.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647729|gb|EFY44214.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648078|gb|EFY44545.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656890|gb|EFY53176.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657400|gb|EFY53672.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663719|gb|EFY59919.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666552|gb|EFY62730.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672289|gb|EFY68401.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676399|gb|EFY72470.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322679508|gb|EFY75553.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686163|gb|EFY82147.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195007|gb|EFZ80193.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200084|gb|EFZ85171.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201095|gb|EFZ86164.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323209492|gb|EFZ94425.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212256|gb|EFZ97080.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216561|gb|EGA01287.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323225810|gb|EGA10030.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323228648|gb|EGA12777.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236738|gb|EGA20814.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239761|gb|EGA23808.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242191|gb|EGA26220.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249385|gb|EGA33301.1| 16S rRNA m(4)C1402 methyltranserfase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252282|gb|EGA36133.1| 16S rRNA m(4)C1402 methyltranserfase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256628|gb|EGA40358.1| 16S rRNA m(4)C1402 methyltranserfase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262997|gb|EGA46547.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265482|gb|EGA48978.1| 16S rRNA m(4)C1402 methyltranserfase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271730|gb|EGA55148.1| 16S rRNA m(4)C1402 methyltranserfase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 313 Score = 365 bits (937), Expect = 6e-99, Method: Composition-based stats. Identities = 120/312 (38%), Positives = 181/312 (58%), Gaps = 19/312 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ Q Sbjct: 6 KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAQ 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +FS+ FS L DYV ++ +DG++ DLGVSS Q+D +RGFSF + G Sbjct: 66 TI---NDPRFSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFMRDG 122 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + G SA++ + A D+ +L GEE+ A RIA AIV+R + P T++ Sbjct: 123 PLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIARAIVERNREQPMTRTKE 182 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L ++SF Sbjct: 183 LAEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSIISF 241 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305 HSLEDR+VK+F +S + + A +++ K ++P +++VA N R Sbjct: 242 HSLEDRIVKRFMREQSRGPQIPAGLPMTEAQLKKLGGRELRALGK--LMPGEKEVAENPR 299 Query: 306 SRSAKLRAGMRT 317 +RS+ LR RT Sbjct: 300 ARSSVLRIAERT 311 >gi|300774256|ref|ZP_07084123.1| S-adenosyl-methyltransferase MraW [Sphingobacterium spiritivorum ATCC 33861] gi|300758935|gb|EFK55764.1| S-adenosyl-methyltransferase MraW [Sphingobacterium spiritivorum ATCC 33861] Length = 303 Score = 365 bits (937), Expect = 6e-99, Method: Composition-based stats. Identities = 121/304 (39%), Positives = 165/304 (54%), Gaps = 16/304 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 HVPV+L++ I L+ P V +D TFG GG+SR K + A D+DP A+ Sbjct: 6 HVPVMLKECIDALSIKPDGVYVDVTFGGGGHSREILKHLGPKGRLFAFDQDPDALENTIA 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 E+F+L F L++ + GV DG++ DLGVSS Q D DRGFS + L Sbjct: 66 -----DERFTLIHQNFRFLKNNLRLNGVKEVDGILADLGVSSHQFDAADRGFSIRFDADL 120 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S + A V+N +DL RI G+ GE A +A +V R SAP +T L Sbjct: 121 DMRMDQVSDLDAKKVLNTYAEEDLHRIFGMYGEIMNAKSLAKTVVTARLSAPIETVAGLK 180 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+K V K ++ H + FQALRI VN E+E L + L LK G L+V+S+HS Sbjct: 181 EVIRKLVPKGKEHKYH--AQVFQALRIEVNKELEALQEFLLQTVSTLKPSGKLVVMSYHS 238 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDRLVK F A K + + P FQ IT+K + ++E+++ N RSRSAKLR Sbjct: 239 LEDRLVKNFMAKGKFKGEVEKDFFGNEIKP--FQVITRKAITASEEELSTNNRSRSAKLR 296 Query: 313 AGMR 316 + Sbjct: 297 VAEK 300 >gi|294674965|ref|YP_003575581.1| S-adenosyl-methyltransferase MraW [Prevotella ruminicola 23] gi|294473982|gb|ADE83371.1| S-adenosyl-methyltransferase MraW [Prevotella ruminicola 23] Length = 304 Score = 365 bits (937), Expect = 6e-99, Method: Composition-based stats. Identities = 109/305 (35%), Positives = 164/305 (53%), Gaps = 16/305 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 HVPVLL + I L G + +D TFG GG+S+ + +++ + D+DP A Sbjct: 9 HVPVLLHESIDGLAIKSGGIYVDVTFGGGGHSKEILRRLDEKAHLYSFDQDPDAEKNIVN 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++F+ ++ F L++++ GVD G++ DLGVSS D RGFSF+ PL Sbjct: 69 -----DDRFTFVRSNFRYLKNWMRYYGVDHIDGLLADLGVSSHHFDDETRGFSFRFDAPL 123 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +G +A++++N + + L I I GE K A +IA I K R +TT DL Sbjct: 124 DMRMNKRAGTTAAEILNTYDEEQLADIFYIYGELKNARKIASIIAKTRNEKKIETTGDLM 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 S +K F + + FQALRI VN+E++ L + L A+ L GG L V+++HS Sbjct: 184 SATEKL--FQREREKKEMAKMFQALRIEVNHEMDALKEMLNGAKDLLGEGGRLSVITYHS 241 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK + + + + P F+ I KV+VP+ E+ N RSRSAKLR Sbjct: 242 LEDRIVKNMMKAGNVEGKIKQDFFGRIEAP--FRLINNKVIVPSDEEQQQNPRSRSAKLR 299 Query: 313 AGMRT 317 + Sbjct: 300 IAEKI 304 >gi|116052453|ref|YP_792766.1| S-adenosyl-methyltransferase MraW [Pseudomonas aeruginosa UCBPP-PA14] gi|122257540|sp|Q02H20|RSMH_PSEAB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|115587674|gb|ABJ13689.1| putative methyltransferase [Pseudomonas aeruginosa UCBPP-PA14] Length = 313 Score = 365 bits (937), Expect = 6e-99, Method: Composition-based stats. Identities = 121/313 (38%), Positives = 182/313 (58%), Gaps = 14/313 (4%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAV 71 + H+ VLLE+ ++ L P LD TFG GG+SR+ + G ++ D+DP A+ Sbjct: 2 NATYRHITVLLEEAVSALAPREDGCYLDGTFGRGGHSRALLEKLGTGGRLLGFDKDPQAI 61 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSF 127 G + + +F + Q +F++L D V +G VDGV+ DLGVSS Q+D +RGFSF Sbjct: 62 QTG-KALAAEDGRFVIVQRSFAELGDEVRARGLEGRVDGVLLDLGVSSPQLDDPERGFSF 120 Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 GPLDMRM+ GISA++ + A +++ R+ + GEE+ A R+A AIV+RRQ PF+ Sbjct: 121 LNDGPLDMRMNPGQGISAAEFIANATEEEIARVFKVYGEERFAKRMARAIVQRRQERPFE 180 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T DL+ +I + + +PATR+FQ LRI VNNE+ +L +GL +A ++L GG L+ Sbjct: 181 RTADLAEVITVANPAWEKGK-NPATRAFQGLRIHVNNELGDLERGLDAALESLAVGGRLV 239 Query: 247 VVSFHSLEDRLVKKFFASRSG---KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 V+SFHSLEDR+VK F + + I S + + K ++E++ N Sbjct: 240 VISFHSLEDRIVKLFMRKHAKGEADNLPRDLPIRSKVFEPRLKLL-GKPQYASEEELKAN 298 Query: 304 RRSRSAKLRAGMR 316 RSRSA +R + Sbjct: 299 PRSRSAVMRVAEK 311 >gi|157803594|ref|YP_001492143.1| S-adenosyl-methyltransferase MraW [Rickettsia canadensis str. McKiel] gi|167011837|sp|A8EYC5|RSMH_RICCK RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|157784857|gb|ABV73358.1| S-adenosyl-methyltransferase MraW [Rickettsia canadensis str. McKiel] Length = 308 Score = 365 bits (937), Expect = 6e-99, Method: Composition-based stats. Identities = 124/304 (40%), Positives = 180/304 (59%), Gaps = 5/304 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETM 78 H+PV+L +++A L P GK LD TFGAGGYS++ + V ALDRDP + + Sbjct: 5 HIPVMLNEMLANLAPQDGKSYLDCTFGAGGYSKAILESCNCYVTALDRDPNVIKRAERIK 64 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138 ++Y +F + F+ + +K DG+V DLGVSSMQ+D DRGFSF PLDMRMS Sbjct: 65 QNYSTRFDFIETNFADSFAKLKEKKFDGIVLDLGVSSMQLDIADRGFSFLHDSPLDMRMS 124 Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198 G+SA + +N K+L I+ G+E + RIA IV+ R++A +T L+ +++ + Sbjct: 125 GQGLSAEEFINTVEEKELADIIYKYGDESFSRRIAKRIVEYRKTARINSTGKLAEIVRNS 184 Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258 + F K +I PAT++FQA+RI++N+E+ EL + L + + L G L++VSFHSLEDR+V Sbjct: 185 IGFRK-GKIDPATKTFQAIRIYINDELRELERFLANVQNILNKDGRLVIVSFHSLEDRIV 243 Query: 259 KKFFASRSGKVMA---VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 K FF S K +A P + IT K P+ ++V N R+RSAKLRA Sbjct: 244 KHFFKENSEKPVARSKYSKDNPVIDPNKWLKIITNKAEAPSDKEVELNVRARSAKLRAAK 303 Query: 316 RTVE 319 E Sbjct: 304 AIYE 307 >gi|299143950|ref|ZP_07037030.1| S-adenosyl-methyltransferase MraW [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518435|gb|EFI42174.1| S-adenosyl-methyltransferase MraW [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 312 Score = 365 bits (937), Expect = 6e-99, Method: Composition-based stats. Identities = 108/308 (35%), Positives = 163/308 (52%), Gaps = 10/308 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 +H VL E I LLN + +D T G G+S K+ +I +D+D A+ + Sbjct: 4 NHKSVLFEDTINLLNIKENGIYVDGTIGGAGHSSQILKILNGTGLLIGIDQDLAALEKSK 63 Query: 76 ETMRDYK-EQFSLFQAT---FSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E + + + LF + F+ + D + VDG + DLGVSS Q D GDRGFS+ Sbjct: 64 EVLGELGYNNYKLFNSNYKDFNVILDSLEIDKVDGFLLDLGVSSYQFDEGDRGFSYNYDA 123 Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM + SA D+VN + +++ +IL EEK A RIA IVK R P TT + Sbjct: 124 KLDMRMDTNAAFSAWDIVNGYSKEEIAKILWDYSEEKWAGRIADFIVKSRIKKPIDTTFE 183 Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I+ + + + + HPA ++FQALRI NNE++ L L L GG + V+S Sbjct: 184 LVEIIKNAIPAAARKKKGHPAKKTFQALRIETNNELDVLRNTLGRMIDRLNPGGRIAVIS 243 Query: 250 FHSLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK+ F + + + + + IT+K +V +++++ N R+ S Sbjct: 244 FHSLEDRIVKETFKYYYLDCICPEKAPVCNCGKKREIEIITRKPIVASEKELIENNRAHS 303 Query: 309 AKLRAGMR 316 AKLR + Sbjct: 304 AKLRVAEK 311 >gi|15599616|ref|NP_253110.1| S-adenosyl-methyltransferase MraW [Pseudomonas aeruginosa PAO1] gi|107099995|ref|ZP_01363913.1| hypothetical protein PaerPA_01001016 [Pseudomonas aeruginosa PACS2] gi|254244769|ref|ZP_04938091.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|296391129|ref|ZP_06880604.1| S-adenosyl-methyltransferase MraW [Pseudomonas aeruginosa PAb1] gi|20139184|sp|Q9HVZ5|RSMH_PSEAE RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|9950652|gb|AAG07808.1|AE004856_19 conserved hypothetical protein [Pseudomonas aeruginosa PAO1] gi|126198147|gb|EAZ62210.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] Length = 313 Score = 365 bits (937), Expect = 7e-99, Method: Composition-based stats. Identities = 121/313 (38%), Positives = 181/313 (57%), Gaps = 14/313 (4%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAV 71 + H+ VLLE+ ++ L P LD TFG GG+SR+ + G ++ D+DP A+ Sbjct: 2 NATYRHITVLLEEAVSALAPREDGCYLDGTFGRGGHSRALLEKLGAGGRLLGFDKDPQAI 61 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSF 127 G + + +F + Q +F++L D V +G VDGV+ DLGVSS Q+D +RGFSF Sbjct: 62 QTG-KALAAEDGRFVIVQRSFAELGDEVRARGLEGRVDGVLLDLGVSSPQLDDPERGFSF 120 Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 GPLDMRM+ GISA++ + A +++ R+ GEE+ A R+A AIV+RRQ PF+ Sbjct: 121 LNDGPLDMRMNPGQGISAAEFIANATEEEIARVFKEYGEERFAKRMARAIVQRRQERPFE 180 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T DL+ +I + + +PATR+FQ LRI VNNE+ +L +GL +A ++L GG L+ Sbjct: 181 RTADLAEVITVANPAWEKGK-NPATRAFQGLRIHVNNELGDLERGLDAALESLAVGGRLV 239 Query: 247 VVSFHSLEDRLVKKFFASRSG---KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 V+SFHSLEDR+VK F + + I S + + K ++E++ N Sbjct: 240 VISFHSLEDRIVKLFMRKHAKGEADNLPRDLPIRSKVFEPRLKLL-GKPQYASEEELKAN 298 Query: 304 RRSRSAKLRAGMR 316 RSRSA +R + Sbjct: 299 PRSRSAVMRVAEK 311 >gi|313200234|ref|YP_004038892.1| s-adenosyl-methyltransferase mraw [Methylovorus sp. MP688] gi|312439550|gb|ADQ83656.1| S-adenosyl-methyltransferase MraW [Methylovorus sp. MP688] Length = 321 Score = 365 bits (937), Expect = 7e-99, Method: Composition-based stats. Identities = 120/310 (38%), Positives = 172/310 (55%), Gaps = 13/310 (4%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSC 73 + HV VLLE+ +A L P + +D TFG GG+SR + ++ LDRD AVS Sbjct: 13 VSPHVSVLLEEAVAALAIKPNGIYVDGTFGRGGHSRKILEQLGADGRLLGLDRDLAAVSA 72 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 Q +FS+ FS+L + + + VDGV+ DLG+SS QID G+RGFSF+ Sbjct: 73 AQSI---QDPRFSIHHHHFSELGEVLRAQDIQQVDGVLLDLGISSPQIDEGERGFSFRFD 129 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA-PFQTT 188 GPLDMRM S G +A++ + +A+ + LT ++ GEE+ A ++A AIV R TT Sbjct: 130 GPLDMRMDQSRGQTAAEFLAEASEQQLTGVIKEYGEERFAKQVARAIVAARTGGNALTTT 189 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ ++ + + + PATR+FQALRIF+N E+EEL+ L AL GG L V+ Sbjct: 190 GQLAKVVAGAIPKVEPGQ-DPATRTFQALRIFLNQELEELSLVLPQCLDALAPGGRLAVI 248 Query: 249 SFHSLEDRLVKKFFA-SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 SFHSLEDR+VK+F + + + + P K + P+ ++ N RSR Sbjct: 249 SFHSLEDRIVKRFVRSEQDRDDLPANFPVLAKDLPQPRMMAVGKPIKPSAAEIKRNPRSR 308 Query: 308 SAKLRAGMRT 317 SA LR RT Sbjct: 309 SAVLRVAERT 318 >gi|224024612|ref|ZP_03642978.1| hypothetical protein BACCOPRO_01339 [Bacteroides coprophilus DSM 18228] gi|224017834|gb|EEF75846.1| hypothetical protein BACCOPRO_01339 [Bacteroides coprophilus DSM 18228] Length = 304 Score = 365 bits (937), Expect = 7e-99, Method: Composition-based stats. Identities = 110/304 (36%), Positives = 171/304 (56%), Gaps = 16/304 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H+PVLLE+ I +N PG + +D TFG GG+S+ + S + + D+D A E Sbjct: 9 HIPVLLEESIDGMNIQPGGIYVDMTFGGGGHSKEILRRMDKDSRLFSFDQDEDA-----E 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 E+F+ ++ F L +++ GV D ++ DLGVSS D +RGFSF+ G L Sbjct: 64 RNIVNDERFTFVRSNFRYLHNFLRYYGVEKVDAILADLGVSSHHFDDSERGFSFRFDGNL 123 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +GI+A+D+VN + L + + GE K + ++A +VK R S T D Sbjct: 124 DMRMNKRAGITAADIVNTYEEERLADLFYLYGELKNSRKLAATLVKARSSKKIVTIGDFL 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +++ + + + FQALRI VN E+E L + L +A +ALK GG L V+++HS Sbjct: 184 DIVKPL--YGREREKKELAKVFQALRIEVNQEMEALKEMLYAATEALKPGGRLSVITYHS 241 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK + + + +V+ + P F+ + KV+VPT+E++ N RSRSAKLR Sbjct: 242 LEDRIVKNVMKTGNAEGKSVQDFYGNVQSP--FRLVNNKVIVPTEEEIIRNPRSRSAKLR 299 Query: 313 AGMR 316 + Sbjct: 300 IAEK 303 >gi|62178687|ref|YP_215104.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|68565397|sp|Q57TD8|RSMH_SALCH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|62126320|gb|AAX64023.1| putative S-adenosyl methionine adenyltransferase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] Length = 312 Score = 365 bits (937), Expect = 7e-99, Method: Composition-based stats. Identities = 120/312 (38%), Positives = 181/312 (58%), Gaps = 19/312 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ Q Sbjct: 5 KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAQ 64 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +FS+ FS L DYV ++ +DG++ DLGVSS Q+D +RGFSF + G Sbjct: 65 TI---NDPRFSIIHGPFSALADYVAEREFTGKIDGILLDLGVSSPQLDDAERGFSFMRDG 121 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + G SA++ + A D+ +L GEE+ A RIA AIV+R + P T++ Sbjct: 122 PLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIARAIVERNREQPMTRTKE 181 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L ++SF Sbjct: 182 LAEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSIISF 240 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305 HSLEDR+VK+F +S + + A +++ K ++P +++VA N R Sbjct: 241 HSLEDRIVKRFMREQSRGPQVPAGLPMTEAQRKKLGGRELRALGK--LMPGEKEVAENPR 298 Query: 306 SRSAKLRAGMRT 317 +RS+ LR RT Sbjct: 299 ARSSVLRIAERT 310 >gi|238022305|ref|ZP_04602731.1| hypothetical protein GCWU000324_02212 [Kingella oralis ATCC 51147] gi|237866919|gb|EEP67961.1| hypothetical protein GCWU000324_02212 [Kingella oralis ATCC 51147] Length = 324 Score = 365 bits (937), Expect = 7e-99, Method: Composition-based stats. Identities = 113/321 (35%), Positives = 172/321 (53%), Gaps = 12/321 (3%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 M+ A H+ VLL + + LN + +D TFG GG+SR ++ D Sbjct: 1 MNLAAKPKSFQHITVLLNEAVDALNIQENGIYVDGTFGRGGHSRLILSKLGEKGRLVVFD 60 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGD 122 +DP A++ ++ + + S+ FS Q + + GV DG +FDLG+SS QID Sbjct: 61 KDPQAIAVARD-LAAQDARVSVVHNGFSHFQAALDELGVAKIDGALFDLGISSPQIDDAS 119 Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF+ PLDMRM + G SA+D + A+ ++ ++ GEE+ + IA AIV +R Sbjct: 120 RGFSFRFDAPLDMRMDTTRGQSAADWLAVASEDEINEVIKNYGEERFSRAIARAIVAQRG 179 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 P TT L+ + + V + + PATR+FQA+RIF+N E++E+ L A + L Sbjct: 180 ETPIDTTSKLAKIAAQCVRTRERGQ-DPATRTFQAIRIFINRELDEIQAVLPQAVERLNL 238 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQED 299 GG L V++FHSLEDRLVK+F + + + ++ ++I K + + E+ Sbjct: 239 GGRLAVIAFHSLEDRLVKQFIRQYATHAPLPKWAMVREADLPQPPLRAI-GKAIKASAEE 297 Query: 300 VAFNRRSRSAKLRAGMRTVER 320 VA N R+RSA LR RT R Sbjct: 298 VAANPRARSAVLRVAERTAGR 318 >gi|16126800|ref|NP_421364.1| hypothetical protein CC_2562 [Caulobacter crescentus CB15] gi|221235581|ref|YP_002518018.1| S-adenosyl-methyltransferase MraW [Caulobacter crescentus NA1000] gi|20139272|sp|Q9RQJ6|RSMH_CAUCR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446411|sp|B8H0A2|RSMH_CAUCN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|6318314|gb|AAF06834.1|AF099190_2 unknown [Caulobacter crescentus CB15] gi|13424128|gb|AAK24532.1| conserved hypothetical protein [Caulobacter crescentus CB15] gi|220964754|gb|ACL96110.1| S-adenosyl-methyltransferase mraW [Caulobacter crescentus NA1000] Length = 311 Score = 365 bits (937), Expect = 7e-99, Method: Composition-based stats. Identities = 139/311 (44%), Positives = 200/311 (64%), Gaps = 5/311 (1%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQ 75 + H+ VLL++V+ L+ PG V++D TFGAGGY+R+ G++V+A DRDP Sbjct: 2 SAAPHISVLLDEVVEALDAKPGDVVVDGTFGAGGYTRAVLPTGASVVAFDRDPTVRQFAA 61 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 ++F L QA FS++ D + + V+GV+ DLGVSSMQ+D +RGFSF + GPLDM Sbjct: 62 NL---PADRFRLVQARFSEMLDELGPESVEGVMLDLGVSSMQLDQAERGFSFMRDGPLDM 118 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RM +G +A+D+VN + +L +IL + GEE + RIA I++RR+ PF+ T DL+ +I Sbjct: 119 RMGDTGPTAADLVNTLDHAELAKILYVYGEEHASRRIASFILRRREERPFERTLDLAEVI 178 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 ++ V K ++HPATRSFQ LRI VN+E+ EL GL +AE+ LK GG L+VV+FHSLED Sbjct: 179 ERAVGGRKGAKVHPATRSFQGLRIAVNDELGELEAGLAAAERVLKPGGRLVVVTFHSLED 238 Query: 256 RLVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 R+VK F A R+GK + FQ I+ K + P++ ++A N R+RS+KLRA Sbjct: 239 RIVKAFLAERAGKAPGGSRHAPPVAAGAAPSFQLISNKAIAPSEAELAVNPRARSSKLRA 298 Query: 314 GMRTVERSIED 324 +RT E Sbjct: 299 AVRTDAPVWEA 309 >gi|90407776|ref|ZP_01215954.1| S-adenosyl-methyltransferase [Psychromonas sp. CNPT3] gi|90311136|gb|EAS39243.1| S-adenosyl-methyltransferase [Psychromonas sp. CNPT3] Length = 313 Score = 365 bits (937), Expect = 7e-99, Method: Composition-based stats. Identities = 126/312 (40%), Positives = 186/312 (59%), Gaps = 12/312 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 +H+ VLL++ + L + +DATFG GG+SR K +IA+DRDP A+ Sbjct: 3 EHITVLLDEAVNGLAIKEEGIYIDATFGRGGHSRHILKQLGPKGRLIAIDRDPRAIVTA- 61 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E + +FS+ FS L +YV + G +DGV+ DLGVSS Q+D +RGFSF + G Sbjct: 62 ELLMQEDARFSIIHGPFSDLANYVKELGLAGQIDGVLLDLGVSSPQLDEAERGFSFMRDG 121 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + GISA+ + +A+V+D++ +L GEEK A RIA AIV R+ PF T D Sbjct: 122 PLDMRMDPTTGISAAQWLAKADVEDISWVLKTFGEEKFAYRIARAIVADREETPFLRTLD 181 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L++LI + + + HPATRSFQA+RI+VN+E+EE+ + L A L GLL V+SF Sbjct: 182 LANLISRLCP-KREKKKHPATRSFQAIRIYVNSELEEIHKVLDGALDILAIDGLLSVISF 240 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT--KKVVVPTQEDVAFNRRSRS 308 HSLEDR+VK+F + + ++A +++ K + P+ ++ N+RSRS Sbjct: 241 HSLEDRIVKRFIRKQEKGREYPPGLPLTDAQMQSGKTMKAQGKALKPSAGEIEQNKRSRS 300 Query: 309 AKLRAGMRTVER 320 + LR +T + Sbjct: 301 SVLRVAKKTAQP 312 >gi|261365120|ref|ZP_05978003.1| S-adenosyl-methyltransferase MraW [Neisseria mucosa ATCC 25996] gi|288566552|gb|EFC88112.1| S-adenosyl-methyltransferase MraW [Neisseria mucosa ATCC 25996] Length = 317 Score = 365 bits (937), Expect = 7e-99, Method: Composition-based stats. Identities = 117/317 (36%), Positives = 170/317 (53%), Gaps = 14/317 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 MS+A + H+ VLL + + L + +D TFG GG+SR +I D Sbjct: 1 MSNAEYQ----HITVLLNEAVDALAVREDGIYVDGTFGRGGHSRLILSRLGSQGRLIVFD 56 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGD 122 +DP A+ + + + + ++ FS Q + G+ DG +FDLG+SS QID G Sbjct: 57 KDPQAIEAA-QKLAEQDGRVTVVHDGFSSFQTTLDKLGIEEIDGALFDLGISSPQIDDGA 115 Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF+ PLDMRM + G+SA+D + A+ +DL ++ GEE+ + +IA AIV +R Sbjct: 116 RGFSFRFDAPLDMRMDPTRGMSAADWIATASEQDLHEVIKNYGEERFSRQIARAIVAQRA 175 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 P TT+ L+ L+ + V + + PATR+FQA+RIF+N E+EE+ L LK Sbjct: 176 ENPIDTTRKLAQLVAQNVRTRERGQ-DPATRTFQAVRIFINRELEEVEAVLPQVMGRLKE 234 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDV 300 GG L V++FHSLEDR+VK+F S R + P K + P E+ Sbjct: 235 GGRLAVIAFHSLEDRIVKQFVKKYSQHPPLPRWAAVKEADLPLPPLKAVGKAIKPGVEET 294 Query: 301 AFNRRSRSAKLRAGMRT 317 A N R+RSA LR RT Sbjct: 295 ASNPRARSAVLRVAERT 311 >gi|290581041|ref|YP_003485433.1| hypothetical protein SmuNN2025_1515 [Streptococcus mutans NN2025] gi|254997940|dbj|BAH88541.1| conserved hypothetical protein [Streptococcus mutans NN2025] Length = 316 Score = 365 bits (937), Expect = 7e-99, Method: Composition-based stats. Identities = 101/321 (31%), Positives = 165/321 (51%), Gaps = 15/321 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 M++ H H+ VLL + I +L+ P + +DAT G G+S ++ D Sbjct: 1 MTNDFH-----HITVLLHETIDMLDIKPDGIYVDATLGGAGHSECLLSKLGKEGHLYCFD 55 Query: 66 RDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120 +D A+ + ++ Y Q S + F L+ + D+G+ DG+ +DLGVSS Q+D Sbjct: 56 QDQKAIDNAKIRLQQYVKTGQVSFIKDNFRHLKSRLADEGIYEIDGICYDLGVSSPQLDE 115 Query: 121 GDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS++K PLDMRM+ ++A DVVN + +DL R+ GE+K + +IA I Sbjct: 116 RERGFSYKKDAPLDMRMNQDAQLTAFDVVNTYDYRDLVRLFFKYGEDKFSKQIARKIESA 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R+ +TT +L+ +I+ + + HPA + FQA+RI VN+E+ + L A Sbjct: 176 RKEKLIETTAELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAAEESLTQALDL 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L G + V++FHSLEDRL K+ F + + F + +K ++P Sbjct: 236 LALNGRIAVITFHSLEDRLTKQLFKEVTTLDVPKGLPFVPENLQPKFSLVNRKPILPNVR 295 Query: 299 DVAFNRRSRSAKLRAGMRTVE 319 +++ N R+ SAKLR + Sbjct: 296 ELSENNRAHSAKLRVIQKIRN 316 >gi|227327098|ref|ZP_03831122.1| S-adenosyl-methyltransferase MraW [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 314 Score = 364 bits (936), Expect = 8e-99, Method: Composition-based stats. Identities = 119/311 (38%), Positives = 180/311 (57%), Gaps = 18/311 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H VLL++ + LN G + +D TFG GG+SR ++A+DRDP A+ + Sbjct: 6 KHTTVLLDEAVNGLNIRSGGIYIDGTFGRGGHSRLILSQLGPEGRLLAIDRDPQAIEAAR 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +FS+ FS + +YV + G +DGV+ DLGVSS Q+D +RGFSF + G Sbjct: 66 ---AIDDPRFSIIHGPFSAMAEYVAELGLTGQIDGVLLDLGVSSPQLDDPERGFSFMRDG 122 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + G+SA++ + +A D+ +L GEE+ A RIA AIV+R + P T++ Sbjct: 123 PLDMRMDPTRGLSAAEWLMKAEADDIVWVLKTFGEERFAKRIARAIVERNRLDPMTRTKE 182 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ LI + ++ HPATRSFQA+RI++N+E+EE+ + L A L G L V+SF Sbjct: 183 LAELIAAASPIREKHK-HPATRSFQAIRIYINSELEEIERALEGALSVLAPQGRLSVISF 241 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNRR 305 HSLEDR+VK+F +S + + +++ KK ++P++E+VA N R Sbjct: 242 HSLEDRIVKRFIRHQSRGPQVPAGLPLTEEQLRSQGGQTLKAVGKK-LMPSEEEVAENPR 300 Query: 306 SRSAKLRAGMR 316 +RS+ LR R Sbjct: 301 ARSSVLRFAER 311 >gi|227538294|ref|ZP_03968343.1| S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Sphingobacterium spiritivorum ATCC 33300] gi|227241809|gb|EEI91824.1| S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Sphingobacterium spiritivorum ATCC 33300] Length = 303 Score = 364 bits (936), Expect = 9e-99, Method: Composition-based stats. Identities = 121/304 (39%), Positives = 165/304 (54%), Gaps = 16/304 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 HVPV+L++ I L+ P V +D TFG GG+SR K + A D+DP A+ Sbjct: 6 HVPVMLKECIDALSIKPDGVYVDVTFGGGGHSREILKHLGPKGRLFAFDQDPDALENTIA 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 E+F+L F L++ + GV DG++ DLGVSS Q D DRGFS + L Sbjct: 66 -----DERFTLIHQNFRFLKNNLRLNGVKEVDGILADLGVSSHQFDAADRGFSIRFDADL 120 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S + A V+N +DL RI G+ GE A +A +V R SAP +T L Sbjct: 121 DMRMDQVSDLDAKKVLNTYAEEDLHRIFGMYGEIMNAKSLAKTVVTARLSAPIETVAGLK 180 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+K V K ++ H + FQALRI VN E+E L + L LK G L+V+S+HS Sbjct: 181 EVIRKLVPKGKEHKYH--AQVFQALRIEVNKELEALQEFLLQTVSTLKPSGKLVVMSYHS 238 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDRLVK F A K + + P FQ IT+K + ++E+++ N RSRSAKLR Sbjct: 239 LEDRLVKNFMAKGKFKGEVEKDFFGNEIKP--FQVITRKAITASEEELSTNNRSRSAKLR 296 Query: 313 AGMR 316 + Sbjct: 297 VAEK 300 >gi|332305217|ref|YP_004433068.1| S-adenosyl-methyltransferase MraW [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172546|gb|AEE21800.1| S-adenosyl-methyltransferase MraW [Glaciecola agarilytica 4H-3-7+YE-5] Length = 311 Score = 364 bits (936), Expect = 9e-99, Method: Composition-based stats. Identities = 125/311 (40%), Positives = 182/311 (58%), Gaps = 13/311 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 T H+ VLL++ + L+ P V LDATFG GG+S+ +IALDRDP A+ Sbjct: 3 TQTSHLSVLLQESLDGLSIKPDGVYLDATFGRGGHSKQILTQLSDKGRLIALDRDPSAIK 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + D +FS+ FS+++D + VDG++ DLGVSS Q+D +RGFSF Sbjct: 63 SAKALAND--PRFSIHHCNFSEMEDVLTSLELHGKVDGILMDLGVSSPQLDEPERGFSFM 120 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM+ + G SA+ + A +D+ +++ GEEK RIAH IV RQ AP T Sbjct: 121 REGPLDMRMNPTKGQSAAQWLAHAEEQDIAQVIKEFGEEKFGKRIAHGIVNARQQAPITT 180 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T L+ +I V K+ HPATRSFQ +RI++N+E++E+ GL+SA +L +GG L V Sbjct: 181 TAQLAEIIDIAVPV-KDKFKHPATRSFQGIRIYINSELDEIRTGLKSALNSLNSGGRLSV 239 Query: 248 VSFHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 +SFHSLEDRLVK+F +S +V ++ S K + P+ E+++ N R Sbjct: 240 ISFHSLEDRLVKRFIREQSRGLQVPHGLPIMQSEIDSHKALKAIGKAIKPSSEELSRNVR 299 Query: 306 SRSAKLRAGMR 316 +RS+ LR + Sbjct: 300 ARSSVLRVAEK 310 >gi|114570636|ref|YP_757316.1| S-adenosyl-methyltransferase MraW [Maricaulis maris MCS10] gi|123127593|sp|Q0AMV9|RSMH_MARMM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|114341098|gb|ABI66378.1| S-adenosyl-methyltransferase MraW [Maricaulis maris MCS10] Length = 334 Score = 364 bits (936), Expect = 9e-99, Method: Composition-based stats. Identities = 130/332 (39%), Positives = 195/332 (58%), Gaps = 9/332 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCG 74 ++ H+PV++ +V+ L P G + +D TFGAGGYSR +I +DRDP Sbjct: 2 SVAPHIPVMMSEVLHALEPRSGALYIDGTFGAGGYSRGILSAADCKLIGIDRDPAVQPTA 61 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + ++ +F+ +A FS + + + +G VDG+V D+GVSSMQID +RGFSF + G Sbjct: 62 TQLVQASGGRFAFAEAPFSAMGEVLASRGIDQVDGIVLDIGVSSMQIDQAERGFSFMRKG 121 Query: 132 PLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 PLDMRM+ SG +A+D VN+ +L I + GEE+++ RIA I R A +TT L Sbjct: 122 PLDMRMAASGPTAADAVNRLKEAELADIFYVYGEERRSRRIAKFICTARAEAKIETTDRL 181 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ + K+++IHPAT+ FQALRIFVN+E+ ELA+ L ++E+ L G L+VV+FH Sbjct: 182 AEIVTRAT-GGKHSKIHPATKVFQALRIFVNDELGELARALEASERLLAPLGRLVVVTFH 240 Query: 252 SLEDRLVKKFFASRSGKVMAVR---HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SLEDR+VK F SR+G F +T++ V + E+ A N R+RS Sbjct: 241 SLEDRMVKTFLRSRAGLAGGGGSRYEPAVEAGPAPSFSLLTRRAVSASDEEAAENPRARS 300 Query: 309 AKLRAGMRTVERSIEDDSFVHLPRLPTLSQFR 340 AKLRA +R + D +H +P L++ Sbjct: 301 AKLRAAIRNEAPAWSDSPSLHTSIVP-LARLE 331 >gi|139473295|ref|YP_001128010.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes str. Manfredo] gi|54037825|sp|P65432|RSMH_STRP3 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|54037826|sp|P65433|RSMH_STRP8 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|54041488|sp|P65431|RSMH_STRP1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|88909223|sp|Q48RZ0|RSMH_STRPM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262826830|sp|A2RD40|RSMH_STRPG RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262831446|sp|Q1JAG5|RSMH_STRPB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262831450|sp|Q1JKL7|RSMH_STRPC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262831454|sp|Q1JFK8|RSMH_STRPD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|134271541|emb|CAM29765.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes str. Manfredo] Length = 316 Score = 364 bits (936), Expect = 9e-99, Method: Composition-based stats. Identities = 103/320 (32%), Positives = 169/320 (52%), Gaps = 15/320 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 M+ H HV VLL + + +L+ P + +DAT G G+S ++ D Sbjct: 1 MTKEFH-----HVTVLLHETVDMLDIKPDGIYVDATLGGSGHSAYLLSKLGEEGHLYCFD 55 Query: 66 RDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDC 120 +D A+ Q T++ Y K Q + + F L+ + GVD G+++DLGVSS Q+D Sbjct: 56 QDQKAIDNAQVTLKSYIDKGQVTFIKDNFRHLKARLTALGVDEIDGILYDLGVSSPQLDE 115 Query: 121 GDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS+++ PLDMRM + +A +VVN DL +I GE+K + +IA I + Sbjct: 116 RERGFSYKQDAPLDMRMDRQSLLTAYEVVNTYPFNDLVKIFFKYGEDKFSKQIARKIEQA 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R P +TT +L+ LI+ + + HPA + FQA+RI VN+E+ + ++ A + Sbjct: 176 RAIKPIETTTELAELIKAAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQDAMEL 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L G + V++FHSLEDRL K+ F S + + F+ +++K ++P+ Sbjct: 236 LALDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPLIPEDMKPKFELVSRKPILPSHS 295 Query: 299 DVAFNRRSRSAKLRAGMRTV 318 ++ N+R+ SAKLR + Sbjct: 296 ELTANKRAHSAKLRVAKKIR 315 >gi|291563991|emb|CBL42807.1| S-adenosyl-methyltransferase MraW [butyrate-producing bacterium SS3/4] Length = 311 Score = 364 bits (936), Expect = 9e-99, Method: Composition-based stats. Identities = 102/309 (33%), Positives = 176/309 (56%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSC 73 I +H VLL + + LN P + +D T G GG++ + +I +D+D A++ Sbjct: 2 IFEHKSVLLMETVDSLNVKPDGIYVDGTLGGGGHAYEVSRRLGEKGRLIGIDQDADAIAA 61 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 E + +K++ ++ ++ + +++ + + G VDG+ DLGVSS Q+D DRGFS+++ Sbjct: 62 ATERLLPFKDKVTIVRSNYKNIREVLFNLGIEKVDGIYLDLGVSSYQLDTADRGFSYRED 121 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM + +A+D+VN + +L RI+ GE++ A IA IV+ R+ P +TT Sbjct: 122 APLDMRMDQRNDKTAADIVNGYSEMELYRIIRDYGEDRFAKNIAKHIVREREIHPIETTL 181 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ +I+ + + HPA R+FQA+RI +N+E++ L + + L GG L ++ Sbjct: 182 QLAEIIRGAIPAKIRAEGGHPAKRTFQAIRIELNHELDVLNDSIDTMIDLLNPGGRLSII 241 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+VK F + + + + + +T+K +VP+ E++ NRRS+ Sbjct: 242 TFHSLEDRIVKTRFRTNENPCICPPDFPVCVCGRKSKGRVVTRKPIVPSDEELEENRRSK 301 Query: 308 SAKLRAGMR 316 S+KLR R Sbjct: 302 SSKLRVFER 310 >gi|330811587|ref|YP_004356049.1| S-adenosyl-methyltransferase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379695|gb|AEA71045.1| S-adenosyl-methyltransferase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 315 Score = 364 bits (936), Expect = 1e-98, Method: Composition-based stats. Identities = 120/308 (38%), Positives = 182/308 (59%), Gaps = 12/308 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 +H+ VLL++ + L P LD TFG GG+SR G ++ D+DP A++ GQ Sbjct: 8 NHITVLLDEAVEALAVRPDGCYLDGTFGRGGHSRLILSKLGPGGRLLGFDKDPQAIATGQ 67 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +F + Q +F++L V ++G V GV+ DLGVSS Q+D +RGFSF G Sbjct: 68 A-LAAEDGRFVIVQRSFAELASEVAERGLAGKVSGVLLDLGVSSPQLDDPERGFSFLNDG 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S GISA++ VN A V+++ R+ GEE+ + R+A A+V+RR PF+ T D Sbjct: 127 PLDMRMDPSRGISAAEFVNTAPVEEIARVFKEYGEERFSGRMARAVVERRDIKPFERTGD 186 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ +++ + + +PATR+FQ LRI VNNE+ +L GL +A +AL+ GG L+V+SF Sbjct: 187 LAEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEVGLEAALEALEIGGRLVVISF 245 Query: 251 HSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFNRRSRS 308 HSLEDR+VK F + G+ + +P V + I K ++ ++ N R+RS Sbjct: 246 HSLEDRIVKLFMRKLTKGEADNLPRNLPVRFEAFVPKIKIHGKAQFASEAELKANPRARS 305 Query: 309 AKLRAGMR 316 A +R + Sbjct: 306 AVMRVAEK 313 >gi|302383891|ref|YP_003819714.1| S-adenosyl-methyltransferase MraW [Brevundimonas subvibrioides ATCC 15264] gi|302194519|gb|ADL02091.1| S-adenosyl-methyltransferase MraW [Brevundimonas subvibrioides ATCC 15264] Length = 317 Score = 364 bits (935), Expect = 1e-98, Method: Composition-based stats. Identities = 142/316 (44%), Positives = 190/316 (60%), Gaps = 5/316 (1%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQ 75 + H PVLL +V+ L P G VI+DATFGAGGY+R+ G+ VIALDRDP Sbjct: 2 SPAPHAPVLLAEVLEALAPKAGDVIIDATFGAGGYTRAILATGATVIALDRDPTVQPHAD 61 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 D+ +F+L + FS L D D G +DG+VFD+GVSSMQ+D +RGFSF + GP Sbjct: 62 AVANDHPGRFTLVRTPFSGLADAFADSGAARLDGIVFDIGVSSMQLDEAERGFSFMRDGP 121 Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 LDMRMS G SA+D+VN + L IL G+E+Q+ RIA AI++RR PF T DL+ Sbjct: 122 LDMRMSRDGDSAADIVNTWDHGPLAHILKQYGDERQSGRIATAILRRRTVQPFTRTLDLA 181 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++++ + + HPATR+FQALRI VN+E+ EL GL++AE AL GG L VV+FHS Sbjct: 182 DVVERALGGRRGAPTHPATRTFQALRIAVNDELGELTAGLQAAEAALSPGGRLAVVTFHS 241 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 LEDR+VK F R+G P F K + ++A N R+RSAK Sbjct: 242 LEDRIVKAFLTERTGNAPGGSRHAPMAVETRKPSFTLSFKGAREAGEAELAANPRARSAK 301 Query: 311 LRAGMRTVERSIEDDS 326 LRA +RT + + + Sbjct: 302 LRAAVRTDAPAWKAAA 317 >gi|325847850|ref|ZP_08170072.1| S-adenosyl-methyltransferase MraW [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480868|gb|EGC83921.1| S-adenosyl-methyltransferase MraW [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 306 Score = 364 bits (935), Expect = 1e-98, Method: Composition-based stats. Identities = 115/306 (37%), Positives = 164/306 (53%), Gaps = 12/306 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H VLL + I LN + D T G GG+S+ K S ++ LD+D A+ +E Sbjct: 5 HKSVLLNETIKNLNIKEDGIYADLTLGKGGHSKEILKNLSPEGLLVGLDQDKDAIKAAKE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++D+ F F ++ D + +DG + D+GVSS QID GDRGFS+ K GPL Sbjct: 65 NLKDF-SNVLYFNENFEKISDVLDKASLKMIDGALMDIGVSSYQIDNGDRGFSYMKDGPL 123 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ + ++A +VN ++ +L I GEE+ + IA AIV R+ TT L Sbjct: 124 DMRMNKDNELTAKQIVNDYSLDELWEIFSKYGEERYSKTIAKAIVDYRKLHEINTTLQLR 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +++ K+V N HP R FQALRI VN E+E L L L GG L V++FHS Sbjct: 184 NIVMKSVVT---NEAHPEKRVFQALRIEVNRELEVLENTLEKIVDRLNKGGRLCVITFHS 240 Query: 253 LEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK F S K + + H + I+KK ++P+++++ NRRS SAKL Sbjct: 241 LEDRIVKNKFKEMSKKCICPPEFPVCVCNHEKKVKIISKKPILPSKDELKTNRRSHSAKL 300 Query: 312 RAGMRT 317 R R Sbjct: 301 RVCERV 306 >gi|67459296|ref|YP_246920.1| S-adenosyl-methyltransferase MraW [Rickettsia felis URRWXCal2] gi|75536274|sp|Q4UL18|RSMH_RICFE RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|67004829|gb|AAY61755.1| S-adenosyl-methyltransferase MraW [Rickettsia felis URRWXCal2] Length = 306 Score = 364 bits (935), Expect = 1e-98, Method: Composition-based stats. Identities = 126/303 (41%), Positives = 185/303 (61%), Gaps = 5/303 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETM 78 H+PV+L +++A L P G+ LD TFGAGGYS++ + + ALDRDP + +E Sbjct: 5 HIPVMLNEMLANLAPKDGEFYLDCTFGAGGYSKAILESCDCYITALDRDPNVIKKAEEIK 64 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138 ++Y E+F + F+ + +K DGVV DLGVSSMQ+D DRGFSF GPLDMRMS Sbjct: 65 QNYGERFDFIETNFADSFAKLKEKKFDGVVLDLGVSSMQLDIADRGFSFLHDGPLDMRMS 124 Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198 G+SA + VN A K+L ++ G+E + RIA IV+ R++ +T L+ +++ + Sbjct: 125 GQGLSAEEFVNIAEEKELADVIYKYGDESFSRRIAKRIVEYRKTTRIDSTGKLAQIVRSS 184 Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258 + F K +I PAT++FQA+RI++NNE+ EL + L + + LK G L+VVSFHSLEDR+V Sbjct: 185 IGFRK-GKIDPATKTFQAIRIYINNELGELERFLANVKNILKKDGRLVVVSFHSLEDRIV 243 Query: 259 KKFFASRSGKVMAVRHMIPSN---AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 K FF S K +A + + IT K + + ++V N R+RSAKLRA Sbjct: 244 KNFFKENSEKPVARSKYAKDDIAIDPDKWLKIITNKALATSDKEVGLNIRARSAKLRAAK 303 Query: 316 RTV 318 + + Sbjct: 304 KIL 306 >gi|183599909|ref|ZP_02961402.1| hypothetical protein PROSTU_03430 [Providencia stuartii ATCC 25827] gi|188022184|gb|EDU60224.1| hypothetical protein PROSTU_03430 [Providencia stuartii ATCC 25827] Length = 316 Score = 364 bits (935), Expect = 1e-98, Method: Composition-based stats. Identities = 124/322 (38%), Positives = 177/322 (54%), Gaps = 22/322 (6%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69 + HV VLL++ + LN P + +D TFG GG+SR +IA+DRDP Sbjct: 1 MTQQQFKHVTVLLDEAVNGLNIKPNGIYIDGTFGRGGHSRLILSQLNEQGRLIAIDRDPE 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGF 125 A+ QE +F + FS + +YV ++G +DGV+ DLGVSS Q+D +RGF Sbjct: 61 AIKAAQEI---DDPRFMIKHGPFSAIAEYVEEEGLVGKIDGVLLDLGVSSPQLDDPERGF 117 Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR---Q 181 SF + GPLDMRM + G SA + A D+ +L GEE+ A RIA AIV+R + Sbjct: 118 SFMRDGPLDMRMDPTKGQSAQQWLMNAQADDIAWVLKTFGEERFAKRIAKAIVERNHNPE 177 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 P T++L+ LI K + ++ HPATRSFQA+RI++N+E+EE+ Q L A L Sbjct: 178 ETPLTRTRELAELIAKVSPIKERHK-HPATRSFQAIRIYINSELEEIEQALEGAVSVLAP 236 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPT 296 G L V+SFHSLEDRLVK+F S + + A A + + K + P+ Sbjct: 237 EGRLSVISFHSLEDRLVKRFIRQNSKGPSVPAGIPLTEAQIRELGVAKLREVGK--MKPS 294 Query: 297 QEDVAFNRRSRSAKLRAGMRTV 318 ++ N R+RS+ LR RT+ Sbjct: 295 DAEIDENPRARSSVLRFAQRTL 316 >gi|150009093|ref|YP_001303836.1| S-adenosyl-methyltransferase MraW [Parabacteroides distasonis ATCC 8503] gi|167011834|sp|A6LEV0|RSMH_PARD8 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|149937517|gb|ABR44214.1| S-adenosyl-methyltransferase MraW [Parabacteroides distasonis ATCC 8503] Length = 305 Score = 364 bits (935), Expect = 1e-98, Method: Composition-based stats. Identities = 108/306 (35%), Positives = 165/306 (53%), Gaps = 17/306 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 HVPV+L + + L+ P + +D TFG GG+SR K + D+D A Sbjct: 9 HVPVMLRESLEGLDIRPDGIYVDVTFGGGGHSREILKRLGSEGELYGFDQDADAEHNV-- 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +F+ ++ F L +++ G VDG++ DLGVSS D DRGFSF+ G Sbjct: 67 ---PADPRFTFVRSNFRYLYNFMRYYGESGEVDGLLADLGVSSHHFDDKDRGFSFRFDGT 123 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ +G +A+D+VN + L + + GE K + ++A +VK R++ +T D Sbjct: 124 LDMRMNTRAGQTAADIVNNYTAEALADVFYLYGELKVSRKLASVLVKARETKKIETIGDF 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ K+ + FQALRI VN+E+ L + LRS + L+ GG L+V+++H Sbjct: 184 LEVIKPFT--GKDKEKKFLAQVFQALRIEVNDEMRALKEMLRSTLRVLRPGGRLVVITYH 241 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDRLVK F + + + + + P F+ + KV+VPT E+V N RSRSAKL Sbjct: 242 SLEDRLVKNFLKTGNFEGKCEQDFFGNVRSP--FRLVNNKVIVPTDEEVERNPRSRSAKL 299 Query: 312 RAGMRT 317 R + Sbjct: 300 RIAEKV 305 >gi|149914518|ref|ZP_01903048.1| S-adenosyl-methyltransferase MraW [Roseobacter sp. AzwK-3b] gi|149811311|gb|EDM71146.1| S-adenosyl-methyltransferase MraW [Roseobacter sp. AzwK-3b] Length = 331 Score = 364 bits (935), Expect = 1e-98, Method: Composition-based stats. Identities = 143/330 (43%), Positives = 196/330 (59%), Gaps = 8/330 (2%) Query: 9 MSSAIH--HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALD 65 M++A H+PVLL ++ + P V +D T GAGGY+R + G+ VI +D Sbjct: 1 MAAAAQAPDPSAPHIPVLLRPLLEAVAPVE-GVWIDGTLGAGGYTRGLLEAGAQTVIGVD 59 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125 RDP A+ Y ++ L Q FS + + D VDGVV DLGVSSMQ+D +RGF Sbjct: 60 RDPLALEMAALWGAAYGDRLVLVQDIFSNMDAHASD--VDGVVLDLGVSSMQLDRAERGF 117 Query: 126 SFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 SF + GPLDMRMS G +A+D+VN A+ +L IL + GEE+ + RIA AI++ R S Sbjct: 118 SFMRDGPLDMRMSQQGPTAADLVNTADEGELADILYLYGEERASRRIARAILRERASGDI 177 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT L+ +I+ + K ++HPATRSFQALRI VN+E EL GL +AE+ALK GG L Sbjct: 178 DTTLHLARIIESCLPRPKPGQVHPATRSFQALRIAVNDEFGELVAGLEAAERALKPGGKL 237 Query: 246 IVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 VV+FHS+EDR+VK+F ++S RH PA F +K + P + ++A N Sbjct: 238 AVVTFHSIEDRMVKRFLQAKSAGGGGGSRHAPAMRPEPAEFDVTQRKAIGPDKSELAENP 297 Query: 305 RSRSAKLRAGMRT-VERSIEDDSFVHLPRL 333 RSRSAKLR +RT + D + +P L Sbjct: 298 RSRSAKLRVAIRTDAAATPADRKAIGMPLL 327 >gi|307824823|ref|ZP_07655046.1| S-adenosyl-methyltransferase MraW [Methylobacter tundripaludum SV96] gi|307734181|gb|EFO05035.1| S-adenosyl-methyltransferase MraW [Methylobacter tundripaludum SV96] Length = 308 Score = 364 bits (935), Expect = 1e-98, Method: Composition-based stats. Identities = 122/310 (39%), Positives = 181/310 (58%), Gaps = 14/310 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAV--SC 73 +H+PV+ + + L V LD TFG GG+S+ + ++A DRD A+ Sbjct: 2 EHLPVMFAEALQQLAIKEDGVYLDCTFGRGGHSQGILNLLGPSGRLLAFDRDLDAINSDY 61 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQK 129 Q + D ++F L FS L++ V +G VDG++ DLGVSS Q+D +RGFSF + Sbjct: 62 AQAMLED--KRFKLKHTHFSALENIVVSEGLAGKVDGILMDLGVSSPQLDNPERGFSFLR 119 Query: 130 SGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM SG++A + + K L ++L GEE+ A RIA AIV++R +P TT Sbjct: 120 DGPLDMRMDGNSGVTAEQWLAGVDEKALVKVLFEYGEERFARRIARAIVEKRAVSPITTT 179 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 ++L+ LI+ V + ++ HPATRSFQA+RI +N+E++EL L+ + + LK GG L+V+ Sbjct: 180 RELAKLIEDVVPGKEKHK-HPATRSFQAIRIEINSELDELKAVLQQSARILKPGGRLVVI 238 Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 SFHSLEDR+VK+F + SG K + I IT K + +++A N R+R Sbjct: 239 SFHSLEDRIVKRFIRAESGAKYNPGKLPIKEIDIAKGILKITGKALKAGAQEIAQNPRAR 298 Query: 308 SAKLRAGMRT 317 SA +R R Sbjct: 299 SAVMRVAERV 308 >gi|89095267|ref|ZP_01168188.1| S-adenosyl-methyltransferase [Oceanospirillum sp. MED92] gi|89080474|gb|EAR59725.1| S-adenosyl-methyltransferase [Oceanospirillum sp. MED92] Length = 312 Score = 364 bits (935), Expect = 1e-98, Method: Composition-based stats. Identities = 111/309 (35%), Positives = 168/309 (54%), Gaps = 11/309 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQ 75 H+ VLL++ + L +D TFG GG+S + ++ +D+DP A++ Sbjct: 6 KHITVLLDEAVDALVQDKSGFYVDGTFGRGGHSSLVLQGLDENGRLMGIDKDPTAIAHAH 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E +D +E+FS+ +F+QLQ +V ++G VDGV+ DLGVSS Q+D RGFSF G Sbjct: 66 ERFKD-EERFSIAHGSFAQLQQFVTERGMDGKVDGVLLDLGVSSPQLDDASRGFSFLNDG 124 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S G SA++ + +A ++ ++ GEEK + R+A AIV R P TT Sbjct: 125 PLDMRMDTSSGESAAEWIARAEESEIADVIYTYGEEKFSRRMAKAIVNYRAETPITTTAQ 184 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ +I + + + +PATR+FQ +RI +N E+E+L + L A LK GG L+V+SF Sbjct: 185 LAKIIAEANPAWEKGK-NPATRAFQGIRIHINKELEDLEKCLDQALDMLKVGGRLVVISF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT-KKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK+F + IP + K + + N R+RSA Sbjct: 244 HSLEDRIVKRFIRQHVKGDEHLPPGIPFTNDMLKIRMKNVGKAKKASAGETKDNVRARSA 303 Query: 310 KLRAGMRTV 318 +R + Sbjct: 304 VMRVAEKVA 312 >gi|325265585|ref|ZP_08132276.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Kingella denitrificans ATCC 33394] gi|324982933|gb|EGC18554.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Kingella denitrificans ATCC 33394] Length = 323 Score = 364 bits (934), Expect = 1e-98, Method: Composition-based stats. Identities = 114/313 (36%), Positives = 170/313 (54%), Gaps = 10/313 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69 + +H+ VLL + + LN P + +D TFG GG+SR +I D+DP Sbjct: 1 MTTQSFEHITVLLNEAVDALNVRPSGIYVDGTFGRGGHSRLILSRLNEQGRLIVFDKDPA 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFS 126 A++ QE + ++ S+F FS + G+ DG +FDLG+SS QID RGFS Sbjct: 61 AIAVAQE-LARQDQRVSVFHQGFSHFDAACTELGISQIDGALFDLGISSPQIDDASRGFS 119 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 F+ PLDMRM + G SA++ + A+ +++ ++ GEE+ + +IA AIV +R AP Sbjct: 120 FRFDAPLDMRMDTTRGESAAEWLMHADEQEIHEVIKNYGEERFSRQIARAIVAKRIEAPI 179 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT L+ + + V S+ HPATR+FQA+RI++N E++E+AQ L L G L Sbjct: 180 HTTGQLAEIAAQCV-RSREKGQHPATRTFQAIRIYINRELDEVAQVLPQVTTRLNTHGRL 238 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNR 304 V++FHSLEDR+VK+F S + A P I K + E++ +N Sbjct: 239 AVIAFHSLEDRIVKQFMREYSTHAPLPKWAAVREADLPKPPLRIVGKPIKAGAEELNYNP 298 Query: 305 RSRSAKLRAGMRT 317 R+RSA LR RT Sbjct: 299 RARSAILRVAERT 311 >gi|125624479|ref|YP_001032962.1| S-adenosyl-methyltransferase [Lactococcus lactis subsp. cremoris MG1363] gi|263458159|sp|A2RLT4|RSMH_LACLM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263460329|sp|Q02ZY9|RSMH_LACLS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|124493287|emb|CAL98255.1| S-adenosyl-methyltransferase [Lactococcus lactis subsp. cremoris MG1363] Length = 317 Score = 364 bits (934), Expect = 1e-98, Method: Composition-based stats. Identities = 101/307 (32%), Positives = 164/307 (53%), Gaps = 9/307 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76 H VLL + + +L P + +DAT G G+S ++ + D+D A + + Sbjct: 8 KHDTVLLHETVDMLEVKPNGIYVDATLGGAGHSEYLLSKLTTGHLYSFDQDETAHANAKV 67 Query: 77 TMRD--YKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + +++ +L ++ F L+ + + +DG+++DLGVSS Q D RGFS++K Sbjct: 68 RLSEQLAEDKVTLIKSNFRNLKSALAELDITKIDGILYDLGVSSPQFDDSQRGFSYKKEA 127 Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM S +SA +VVN + L RI GE+K + +IA I + R+ P +TT + Sbjct: 128 RLDMRMDQSQTLSAYEVVNDYPYEALVRIFFRYGEDKFSKQIARKIEQSRKIKPIETTIE 187 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ LI+ + + + HPA R FQA+RI VN+E+ + + A LK G + V++ Sbjct: 188 LADLIKSALPQKELKKKGHPAKRIFQAIRIEVNDELGAAEESIEQAIDLLKVDGRISVIT 247 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K F S + + A + I +K V+ ++E++ FN R+ SA Sbjct: 248 FHSLEDRLTKSIFKEYSTVNVPKGLPMLPKEMEAKLKLINRKPVLASEEELEFNNRAHSA 307 Query: 310 KLRAGMR 316 KLR + Sbjct: 308 KLRVAQK 314 >gi|254238917|ref|ZP_04932240.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|126170848|gb|EAZ56359.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] Length = 313 Score = 364 bits (934), Expect = 1e-98, Method: Composition-based stats. Identities = 121/313 (38%), Positives = 181/313 (57%), Gaps = 14/313 (4%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAV 71 + H+ VLLE+ ++ L P LD TFG GG+SR+ + G ++ D+DP A+ Sbjct: 2 NATYRHITVLLEEAVSALAPREDGCYLDGTFGRGGHSRALLEKLGAGGRLLGFDKDPQAI 61 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSF 127 G + + +F + Q +F++L D V +G VDGV+ DLGVSS Q+D +RGFSF Sbjct: 62 QTG-KALAAEDGRFVIVQRSFAELGDEVRARGLEGRVDGVLLDLGVSSPQLDDPERGFSF 120 Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 GPLDMRM+ GISA++ + A +++ R+ GEE+ A R+A AIV+RRQ PF+ Sbjct: 121 LNDGPLDMRMNPGQGISAAEFIANAAEEEIARVFKEYGEERFAKRMARAIVQRRQERPFE 180 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T DL+ +I + + +PATR+FQ LRI VNNE+ +L +GL +A ++L GG L+ Sbjct: 181 RTADLAEVITVANPAWEKGK-NPATRAFQGLRIHVNNELGDLERGLDAALESLAVGGRLV 239 Query: 247 VVSFHSLEDRLVKKFFASRSG---KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 V+SFHSLEDR+VK F + + I S + + K ++E++ N Sbjct: 240 VISFHSLEDRIVKLFMRKHAKGEADNLPRDLPIRSKVFEPRLKLL-GKPQYASEEELKAN 298 Query: 304 RRSRSAKLRAGMR 316 RSRSA +R + Sbjct: 299 PRSRSAVMRVAEK 311 >gi|109899828|ref|YP_663083.1| S-adenosyl-methyltransferase MraW [Pseudoalteromonas atlantica T6c] gi|123170716|sp|Q15Q09|RSMH_PSEA6 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|109702109|gb|ABG42029.1| S-adenosyl-methyltransferase MraW [Pseudoalteromonas atlantica T6c] Length = 311 Score = 364 bits (934), Expect = 1e-98, Method: Composition-based stats. Identities = 122/311 (39%), Positives = 181/311 (58%), Gaps = 13/311 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 T H+ VLL++ I L P V LDATFG GG+++ +IALDRDP A+ Sbjct: 3 TQPSHLSVLLQESIDGLAIKPDGVYLDATFGRGGHTKQILSQLSPNGRLIALDRDPSAIE 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + D +FS+ FS+++D + VDG++ DLGVSS Q+D +RGFSF Sbjct: 63 AAKALADDA--RFSIHHCNFSEMEDVLTSLELHGKVDGILMDLGVSSPQLDEPERGFSFM 120 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM+ + G SA+ + A +D+ +++ GEEK RIAH IV RQ AP T Sbjct: 121 REGPLDMRMNPTKGQSAAQWLAHAEEQDIAQVIKEFGEEKFGKRIAHGIVNARQEAPITT 180 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T L+ +I V K+ HPATRSFQ +RI++N+E++E+ GL++A +L +GG L V Sbjct: 181 TAQLAEIIDLAVPV-KDKFKHPATRSFQGIRIYINSELDEIRTGLKAALNSLNSGGRLSV 239 Query: 248 VSFHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 +SFHSLEDRLVK+F +S +V ++ + K + P+ ++++ N R Sbjct: 240 ISFHSLEDRLVKRFIREQSRGLQVPHGLPIMQAEIDSHKAMKAIGKAIKPSSDELSRNVR 299 Query: 306 SRSAKLRAGMR 316 +RS+ LR + Sbjct: 300 ARSSVLRVAEK 310 >gi|319639028|ref|ZP_07993786.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Neisseria mucosa C102] gi|317399932|gb|EFV80595.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Neisseria mucosa C102] Length = 320 Score = 364 bits (934), Expect = 1e-98, Method: Composition-based stats. Identities = 112/317 (35%), Positives = 173/317 (54%), Gaps = 15/317 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 MS ++ HV VLL + + L + +D TFG GG+SR ++ D Sbjct: 1 MSKVENYQ---HVTVLLHEAVDALAIREDGIYVDGTFGRGGHSRLILSRLGEQGRLVVFD 57 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGD 122 +DP A++ E + ++ S+ F Q + + G+D G +FDLG+SS QID G Sbjct: 58 KDPEAIAVANE-LAAQDKRVSVVHNGFETFQTALDELGIDKIDGALFDLGISSPQIDDGS 116 Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF+ PLDMRM + G+SA++ + A+ +DL ++ GEE+ + +IA AIV +R+ Sbjct: 117 RGFSFRFDAPLDMRMDPTRGMSAAEWIATASEQDLHEVIKNYGEERFSRQIARAIVAQRE 176 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 +P TT+ L+ L+ + V + + PATR+FQA+RIF+N E+EE+ L LK Sbjct: 177 ESPIDTTRKLAQLVAQNVRTRERGQ-DPATRTFQAVRIFINRELEEVEAVLPQVAGRLKE 235 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQED 299 GG L V++FHSLEDR+VK+F S R + ++ +++ K + P + Sbjct: 236 GGRLAVIAFHSLEDRIVKQFIKKYSQHAPLPRWAVVKEADLPQPPLKAV-GKAIKPGSAE 294 Query: 300 VAFNRRSRSAKLRAGMR 316 N R+RSA LR R Sbjct: 295 TEANPRARSAVLRVAER 311 >gi|55981045|ref|YP_144342.1| S-adenosyl-methyltransferase MraW [Thermus thermophilus HB8] gi|68565453|sp|Q5SJD8|RSMH_THET8 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|56966831|pdb|1WG8|A Chain A, Crystal Structure Of A Predicted S-Adenosylmethionine- Dependent Methyltransferase Tt1512 From Thermus Thermophilus Hb8. gi|56966832|pdb|1WG8|B Chain B, Crystal Structure Of A Predicted S-Adenosylmethionine- Dependent Methyltransferase Tt1512 From Thermus Thermophilus Hb8. gi|55772458|dbj|BAD70899.1| conserved hypothetical protein [Thermus thermophilus HB8] Length = 285 Score = 364 bits (934), Expect = 1e-98, Method: Composition-based stats. Identities = 126/300 (42%), Positives = 181/300 (60%), Gaps = 26/300 (8%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 HVPVL ++ + LL PG V +DAT G G++R + G VI LD+DP AV+ + Sbjct: 6 HVPVLYQEALDLLAVRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKGL-- 63 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + ++ Q F L+ ++ GV DG++ DLGVSS +D RGFS+QK GPLDMR Sbjct: 64 -HLPGLTVVQGNFRHLKRHLAALGVERVDGILADLGVSSFHLDDPSRGFSYQKEGPLDMR 122 Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 M G +A +VVN+ ++ L R+L LGEE QA RIA AIV R+ AP +TT L+ +++ Sbjct: 123 MGLEGPTAKEVVNRLPLEALARLLRELGEEPQAYRIARAIVAAREKAPIETTTQLAEIVR 182 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 K V F + HPA ++FQALRI+VN+E+ L + L A + L GG L+V++FHSLEDR Sbjct: 183 KAVGFRRAG--HPARKTFQALRIYVNDELNALKEFLEQAAEVLAPGGRLVVIAFHSLEDR 240 Query: 257 LVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 +VK+F + + +TKK +VP++++ A N R+RSAKLRA + Sbjct: 241 VVKRFLRE------------------SGLKVLTKKPLVPSEKEAAQNPRARSAKLRAAEK 282 >gi|256830379|ref|YP_003159107.1| S-adenosyl-methyltransferase MraW [Desulfomicrobium baculatum DSM 4028] gi|256579555|gb|ACU90691.1| S-adenosyl-methyltransferase MraW [Desulfomicrobium baculatum DSM 4028] Length = 320 Score = 364 bits (934), Expect = 1e-98, Method: Composition-based stats. Identities = 118/314 (37%), Positives = 177/314 (56%), Gaps = 11/314 (3%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAV 71 DH+PV+LE+V+ + P PG +DAT G GG++ ++ + ++ LDRD A+ Sbjct: 2 DAYSDHIPVMLEEVMHWIAPRPGGFYMDATLGLGGHAARLMELTNGQARLLGLDRDEQAL 61 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQ 128 + E + Y E L +F + + G +DGV+ DLGVSS+Q+D +RGFSF Sbjct: 62 AKAGERLAQYGENVQLAHTSFQHFSRALREVGWDKLDGVIADLGVSSLQLDSPERGFSFL 121 Query: 129 KSGPLDMRMSCS--GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + GPLDMRM G AS +VN A+ + L ++L GEE A RIA AIVK R++A Sbjct: 122 QDGPLDMRMDPGSGGEPASVIVNGASFERLRQLLWDYGEEPMAGRIAGAIVKIRETARID 181 Query: 187 TTQDLSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 +T +L+ ++ + +R HPAT++FQALR+ VN E+ E+ L L+ G Sbjct: 182 STLELARIVAAAYPAKRRALSRNHPATKTFQALRLEVNQELREVEFFLERIVDHLRPGAR 241 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 + V+SFHSLEDR+VK+ F S + R + H + +K ++PT++++ N Sbjct: 242 ICVISFHSLEDRIVKRAFRKESSACLCPREYPVCQCGHTQKLRLPFRKPLIPTEDEMRAN 301 Query: 304 RRSRSAKLRAGMRT 317 RSRSAKLR R Sbjct: 302 SRSRSAKLRVAERV 315 >gi|227113994|ref|ZP_03827650.1| S-adenosyl-methyltransferase MraW [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 314 Score = 364 bits (934), Expect = 1e-98, Method: Composition-based stats. Identities = 118/311 (37%), Positives = 179/311 (57%), Gaps = 18/311 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H VLL++ + LN G + +D TFG GG+SR ++A+DRDP A+ + Sbjct: 6 KHTTVLLDEAVNGLNIRSGGIYIDGTFGRGGHSRLILSQLGPEGRLLAIDRDPQAIEAAK 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +FS+ FS + +YV + G +DGV+ DLGVSS Q+D +RGFSF + G Sbjct: 66 ---AIDDPRFSIIHGPFSAMAEYVAELGLTGQIDGVLLDLGVSSPQLDDPERGFSFMRDG 122 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + G+SA++ + +A D+ +L GEE+ A RIA AIV+R + P T++ Sbjct: 123 PLDMRMDPTRGLSAAEWLMKAEADDIVWVLKTFGEERFAKRIARAIVERNRLDPMTRTKE 182 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ LI + ++ HPATRSFQA+RI++N+E+EE+ + L A L G L V+SF Sbjct: 183 LAELIAAASPIREKHK-HPATRSFQAIRIYINSELEEIERALEGALSVLAPQGRLSVISF 241 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNRR 305 HSLEDR+VK+F +S + + +++ KK ++P++ +VA N R Sbjct: 242 HSLEDRIVKRFIRHQSRGPQVPAGLPLTEEQLRSQGGQTLKAVGKK-LMPSEAEVAENPR 300 Query: 306 SRSAKLRAGMR 316 +RS+ LR R Sbjct: 301 ARSSVLRFAER 311 >gi|221638505|ref|YP_002524767.1| S-adenosyl-methyltransferase MraW [Rhodobacter sphaeroides KD131] gi|262825605|sp|B9KNI8|RSMH_RHOSK RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|221159286|gb|ACM00266.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Rhodobacter sphaeroides KD131] Length = 331 Score = 364 bits (934), Expect = 1e-98, Method: Composition-based stats. Identities = 144/331 (43%), Positives = 200/331 (60%), Gaps = 5/331 (1%) Query: 11 SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPF 69 + H+PVLL ++A + P LD TFGAGGY+R + G+ VI +DRDP Sbjct: 2 AEADTERRPHIPVLLRPLLAAVAPVE-GTWLDGTFGAGGYARGLLEAGADRVIGVDRDPL 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 A+ DY ++ L TFSQL + +DGVV DLGVSSMQ+D +RGFSFQK Sbjct: 61 ALEMASGWAGDYGDRLRLVAGTFSQLDSHAGAP-LDGVVLDLGVSSMQLDLAERGFSFQK 119 Query: 130 SGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 GPLDMRMS G SA+D+VN A+ + L IL GEE+ + RIA AIV+ R +AP T Sbjct: 120 DGPLDMRMSQEGESAADLVNTASEETLADILYHYGEERASRRIARAIVEARAAAPITRTL 179 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ ++ + + K ++HPATRSFQA+RI VN E EL +GL +AE+AL+ GG L VV+ Sbjct: 180 ALAEIVARCLPRPKPGQMHPATRSFQAIRIAVNAEFSELVEGLEAAERALRPGGRLAVVT 239 Query: 250 FHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK+F RS G+ R+ + A F ++ + P + ++A N R+RS Sbjct: 240 FHSLEDRIVKRFLQLRSGGEGQGNRYAPETRADAPRFTLPLRRAISPDEAELAENPRARS 299 Query: 309 AKLRAGMRTVERSIE-DDSFVHLPRLPTLSQ 338 A+LR G+RT + + D + P +P + Sbjct: 300 ARLRVGVRTDAPAGKVDPQALGTPLIPKKGR 330 >gi|46445945|ref|YP_007310.1| S-adenosyl-methyltransferase [Candidatus Protochlamydia amoebophila UWE25] gi|51316230|sp|Q6MEG4|RSMH_PARUW RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|46399586|emb|CAF23035.1| probable S-adenosyl-methyltransferase [Candidatus Protochlamydia amoebophila UWE25] Length = 316 Score = 364 bits (934), Expect = 1e-98, Method: Composition-based stats. Identities = 113/307 (36%), Positives = 170/307 (55%), Gaps = 9/307 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCGQ 75 H VLLE+VI P KV +D T GAGG++ + + + + +D+DP A++ Sbjct: 7 PHRSVLLEEVIEAFQPVQLKVFIDGTLGAGGHAEAILEHHPEIELYLGIDQDPNALNIAN 66 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + +K++ L Q FSQ ++ + G DG++ DLGVSSMQ+D +RGFSF K GP Sbjct: 67 KRLEKWKQKILLKQGNFSQFDIFLKEIGFSSMDGLLVDLGVSSMQLDQPERGFSFSKDGP 126 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ G ++A+D+VN + DL +I GEEK+ A IV+ RQ TT DL Sbjct: 127 LDMRMNPEGKLTAADIVNTWSEHDLGKIFRDYGEEKKWRLAARTIVQARQVKQILTTTDL 186 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++L++ ++ I+P T FQALRI VN E++ L Q + LK GG + V+SFH Sbjct: 187 ANLLKPAFAWNPKKGINPLTLIFQALRICVNRELDVLEQLVSKTFDYLKPGGRVAVISFH 246 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK + + V + + +K + P ++++ N RSRSA Sbjct: 247 SLEDRIVKNELRLAASDKWETTGLGSGLFRDKKPVAKLVNRKPICPHEKEIKENPRSRSA 306 Query: 310 KLRAGMR 316 K R + Sbjct: 307 KFRIAEK 313 >gi|126461541|ref|YP_001042655.1| S-adenosyl-methyltransferase MraW [Rhodobacter sphaeroides ATCC 17029] gi|262825567|sp|A3PHR7|RSMH_RHOS1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|126103205|gb|ABN75883.1| S-adenosyl-methyltransferase MraW [Rhodobacter sphaeroides ATCC 17029] Length = 331 Score = 364 bits (934), Expect = 1e-98, Method: Composition-based stats. Identities = 144/331 (43%), Positives = 201/331 (60%), Gaps = 5/331 (1%) Query: 11 SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPF 69 + H+PVLL ++A + P LD TFGAGGY+R + G+ VI +DRDP Sbjct: 2 AEADTERRPHIPVLLRPLLAAVAPVE-GTWLDGTFGAGGYARGLLEAGADRVIGVDRDPL 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 A+ DY ++ L TFSQL + +DGVV DLGVSSMQ+D +RGFSFQK Sbjct: 61 ALKMASGWAGDYGDRLRLVAGTFSQLDSHAGAP-LDGVVLDLGVSSMQLDLAERGFSFQK 119 Query: 130 SGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 GPLDMRMS G SA+D+VN A+ + L IL GEE+ + RIA AIV+ R +AP T Sbjct: 120 DGPLDMRMSQEGESAADLVNTASEESLADILYHYGEERASRRIARAIVEARAAAPITRTL 179 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ ++ + + K ++HPATRSFQA+RI VN E EL +GL +AE+AL+ GG L VV+ Sbjct: 180 ALAEIVARCLPRPKPGQMHPATRSFQAIRIAVNAEFSELVEGLEAAERALRPGGRLAVVT 239 Query: 250 FHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK+F RS G+ R+ + A+ F ++ + P + ++A N R+RS Sbjct: 240 FHSLEDRIVKRFLQLRSGGEGQGNRYAPETRAYAPRFTLPLRRAISPDEAELAENPRARS 299 Query: 309 AKLRAGMRTVERSIE-DDSFVHLPRLPTLSQ 338 A+LR G+RT + + D + P +P + Sbjct: 300 ARLRVGVRTDAPAGKVDPQALGTPLIPKKGR 330 >gi|68171490|ref|ZP_00544874.1| methyltransferase [Ehrlichia chaffeensis str. Sapulpa] gi|67999096|gb|EAM85763.1| methyltransferase [Ehrlichia chaffeensis str. Sapulpa] Length = 297 Score = 364 bits (934), Expect = 1e-98, Method: Composition-based stats. Identities = 133/305 (43%), Positives = 189/305 (61%), Gaps = 14/305 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQET 77 H PVLL +++ +LNP GKV +DATFGAGGY+R+ K V A+D+D ++ Sbjct: 1 MHTPVLLNEMLDILNPQDGKVYVDATFGAGGYTRAILKSANCQVYAIDQDECTNVFYEKL 60 Query: 78 MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + D+ + + FS+++ + K VDG+VFD+GVSSMQ++ RGFSF K GPLD Sbjct: 61 VNDFPGKVHFCVSKFSKIKQILHGAQLKKVDGIVFDIGVSSMQLEDASRGFSFSKDGPLD 120 Query: 135 MRMSCS--GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 MRMS S + AS VN A +++ ++ G EK + +IA AI + R+ P +TT +L+ Sbjct: 121 MRMSTSTSNVDASVFVNTAFEEEIANVIYQYGGEKYSRKIAKAIAESRKKKPIKTTGELA 180 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 S+++ + SKN+ I PATR+FQA+RI+VN E+EEL QG+ + L GG +IVVSFHS Sbjct: 181 SIVRSVISRSKNHSIDPATRTFQAIRIWVNKELEELEQGIIDSADLLNPGGKIIVVSFHS 240 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK F S + P FQ I KKV+ P+ E++ N RSRSAKLR Sbjct: 241 LEDRIVKVMFKSLCSGSSVIS--------PIGFQLINKKVIRPSFEEILNNPRSRSAKLR 292 Query: 313 AGMRT 317 A ++ Sbjct: 293 AILKI 297 >gi|197105793|ref|YP_002131170.1| S-adenosyl-methyltransferase [Phenylobacterium zucineum HLK1] gi|262824815|sp|B4RFS8|RSMH_PHEZH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|196479213|gb|ACG78741.1| S-adenosyl-methyltransferase [Phenylobacterium zucineum HLK1] Length = 310 Score = 364 bits (934), Expect = 2e-98, Method: Composition-based stats. Identities = 140/310 (45%), Positives = 195/310 (62%), Gaps = 5/310 (1%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETM 78 HVPVL+++V+ L PAPG+ I+D TFGAGGY+R+ G++V+A DRDP + Sbjct: 4 PHVPVLMQEVVDALAPAPGRTIIDGTFGAGGYTRAILATGASVVAFDRDPTVRRFAEGL- 62 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138 ++F L +A FS++ + + + DGV DLGVSSMQ+D +RGFSF + GPLDMRM Sbjct: 63 --PADRFRLVEARFSEMDEVLGEGAADGVALDLGVSSMQLDQAERGFSFMQDGPLDMRMG 120 Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198 SG +A+D+VN A +L RI + GEE+++ RIA AI +RR+ PF T +L+ I+K Sbjct: 121 ASGPTAADLVNTAEPAELARIFFVYGEERESRRIARAIARRREEQPFTRTLELADFIEKA 180 Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258 + + +IHPATR+FQ LRI VN E+ EL GL +AE+ LK G L VV+FHSLEDR+V Sbjct: 181 LGGRRGAKIHPATRAFQGLRIAVNEELSELEAGLAAAERVLKPEGRLCVVTFHSLEDRIV 240 Query: 259 KKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 K F + R+G+ A P FQ + P++ +VA N R+RSAKLRA +R Sbjct: 241 KSFLSVRAGRTPAGSRHAPPVRQGPAPSFQLLFNGARGPSETEVAANPRARSAKLRAAVR 300 Query: 317 TVERSIEDDS 326 T D + Sbjct: 301 TDAPVWRDAA 310 >gi|253988586|ref|YP_003039942.1| S-adenosyl-methyltransferase MraW [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780036|emb|CAQ83197.1| s-adenosyl-l-methionine-dependent methyltransferase [Photorhabdus asymbiotica] Length = 314 Score = 364 bits (934), Expect = 2e-98, Method: Composition-based stats. Identities = 123/320 (38%), Positives = 176/320 (55%), Gaps = 19/320 (5%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPF 69 + ++ H VLL++ + LN + +D TFG GG+SR +IA+DRDP Sbjct: 1 MANSHFKHTSVLLDEAVNGLNIRKDGIYIDGTFGRGGHSRLILSQLGMEGRLIAIDRDPQ 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGF 125 A+ + +FS+ FS+L YV + G +DGV+ DLGVSS Q+D +RGF Sbjct: 61 AIETAKSI---TDPRFSIIHGPFSELAHYVENAGLTGKIDGVLLDLGVSSPQLDDPERGF 117 Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF + GPLDMRM + G SA++ + +A D+ +L GEE+ A RIA AIV R Q P Sbjct: 118 SFMRDGPLDMRMDPTHGQSAAEWLMKAEADDIAWVLKTFGEERFAKRIAKAIVTRNQEEP 177 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 T+ L+ LI + K HPATRSFQA+RI++N+E+EE+ Q L A + L G Sbjct: 178 ITRTKVLADLIAQASPV-KEKYKHPATRSFQAIRIYINSELEEIEQALDGALQVLAPRGR 236 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQED 299 L V+SFHSLEDR+VK+F S + + +SI K + P++ + Sbjct: 237 LSVISFHSLEDRIVKRFIRHNSRGPQVPAGLPLTEEQLKAQGGRSLKSIGK--MKPSENE 294 Query: 300 VAFNRRSRSAKLRAGMRTVE 319 VA N R+RS+ LR + E Sbjct: 295 VADNPRARSSVLRFAEKVSE 314 >gi|326795778|ref|YP_004313598.1| ribosomal RNA small subunit methyltransferase H [Marinomonas mediterranea MMB-1] gi|326546542|gb|ADZ91762.1| Ribosomal RNA small subunit methyltransferase H [Marinomonas mediterranea MMB-1] Length = 312 Score = 364 bits (934), Expect = 2e-98, Method: Composition-based stats. Identities = 117/318 (36%), Positives = 187/318 (58%), Gaps = 13/318 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDR 66 M+S+ H +H+ V+L++ + +L +D TFG GG++R ++ D+ Sbjct: 1 MTSSEH----EHISVMLDESVEMLVTNESGQYVDGTFGRGGHTRLVLSKLRDGKLLGFDK 56 Query: 67 DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGD 122 DP A+ G++ + +F + Q +F+ + D++P + +DG++ DLGVSS Q+D + Sbjct: 57 DPVAIEFGRK-LEAEDSRFEIVQDSFANMLDHIPAVFGTEKIDGIMMDLGVSSPQLDDAE 115 Query: 123 RGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF GPLDMRM+ G+SA++ + A K++ ++ GEE+ + RIA AI ++R Sbjct: 116 RGFSFMNDGPLDMRMNPDQGMSAAEWIAVAAEKEIADVMYQYGEERFSRRIAKAICEKRL 175 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 AP TT LS ++ + + + +PATR+FQ +RI++NNE+ +L +GL A +LK Sbjct: 176 EAPITTTAQLSKIVAEANPAWEKGK-NPATRAFQGIRIYINNELGDLEKGLEVAADSLKV 234 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 GG L+V+SFHSLEDR+VK+F S RH+ NAH + K P++++V Sbjct: 235 GGRLVVISFHSLEDRIVKRFMKKMSKGPDLPRHLPIQNAHLDIKFKTVGKATKPSKDEVT 294 Query: 302 FNRRSRSAKLRAGMRTVE 319 N RSRSA LR RT + Sbjct: 295 SNVRSRSAVLRVLERTRD 312 >gi|50122745|ref|YP_051912.1| S-adenosyl-methyltransferase MraW [Pectobacterium atrosepticum SCRI1043] gi|54036180|sp|Q6D0H5|RSMH_ERWCT RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|49613271|emb|CAG76722.1| S-adenosyl-methyltransferase [Pectobacterium atrosepticum SCRI1043] Length = 314 Score = 364 bits (934), Expect = 2e-98, Method: Composition-based stats. Identities = 120/311 (38%), Positives = 179/311 (57%), Gaps = 18/311 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H VLL++ + LN G + +D TFG GG+SR ++A+DRDP A+ + Sbjct: 6 KHTTVLLDEAVNGLNIRSGGIYIDGTFGRGGHSRLILSQLGPEGRLLAIDRDPQAIEAAK 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +FS+ FS + DYV + G +DGV+ DLGVSS Q+D +RGFSF + G Sbjct: 66 ---AIDDSRFSIIHGPFSAMADYVAELGLTGQIDGVLLDLGVSSPQLDDPERGFSFMRDG 122 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + G SA++ + +A D+ +L GEE+ A RIA AIV+R ++ P T++ Sbjct: 123 PLDMRMDPTRGSSAAEWLMKAEADDIVWVLKTFGEERFAKRIARAIVERNRTEPMTRTKE 182 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+SLI + ++ HPATRSFQA+RI++N+E+EE+ + L A L G L V+SF Sbjct: 183 LASLIAAASPIREKHK-HPATRSFQAIRIYINSELEEIERALEGALSVLAPQGRLSVISF 241 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNRR 305 HSLEDR+VK+F +S + + + + KK ++P++ +VA N R Sbjct: 242 HSLEDRIVKRFIRHQSRGPQVPAGLPLTEEQLRSQGGQTLKPVGKK-LMPSEAEVAENPR 300 Query: 306 SRSAKLRAGMR 316 +RS+ LR R Sbjct: 301 ARSSVLRFAER 311 >gi|110680542|ref|YP_683549.1| S-adenosyl-methyltransferase, putative [Roseobacter denitrificans OCh 114] gi|123172199|sp|Q163I0|RSMH_ROSDO RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|109456658|gb|ABG32863.1| S-adenosyl-methyltransferase, putative [Roseobacter denitrificans OCh 114] Length = 330 Score = 363 bits (933), Expect = 2e-98, Method: Composition-based stats. Identities = 144/325 (44%), Positives = 194/325 (59%), Gaps = 6/325 (1%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDP 68 ++A T H+PVLL ++ + P V LD TFGAGGY+R + G+ VIA+DRDP Sbjct: 3 AAATADTTSPHIPVLLPAILDAVAPVQ-GVWLDGTFGAGGYTRGLLEAGADRVIAVDRDP 61 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 A + Y + FS++ Y +DGVV DLGVSSMQ+D +RGFSF Sbjct: 62 LAFEMAADWAGSYGTRLVQQPGVFSEMDTYA--VALDGVVLDLGVSSMQLDLAERGFSFM 119 Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 + GPLDMRMS G SA+D+VN+A+ + L IL GEE+ + RIA AI+ R AP TT Sbjct: 120 RDGPLDMRMSQEGPSAADIVNEASAETLANILFQYGEERASRRIAKAILTERALAPITTT 179 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ +I++ + +K + HPATRSFQALRI VN+E EL QGL +AE+ALK GG L VV Sbjct: 180 LHLAGIIERCLPRAKPGQSHPATRSFQALRIAVNDEYGELYQGLMAAERALKPGGQLAVV 239 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPS-NAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHS+EDR+VK+F +R+G P F ++K +V +VA N R+R Sbjct: 240 TFHSVEDRMVKRFLTARAGAGGNANRFAPEVQRDAPAFTLRSRKAIVADDAEVAANPRAR 299 Query: 308 SAKLRAGMRTVERSIE-DDSFVHLP 331 SAKLR +RT + D V +P Sbjct: 300 SAKLRIAVRTQAPAGVIDAKSVGMP 324 >gi|261867472|ref|YP_003255394.1| S-adenosyl-methyltransferase MraW [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412804|gb|ACX82175.1| S-adenosyl-methyltransferase MraW [Aggregatibacter actinomycetemcomitans D11S-1] Length = 322 Score = 363 bits (933), Expect = 2e-98, Method: Composition-based stats. Identities = 123/325 (37%), Positives = 177/325 (54%), Gaps = 20/325 (6%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M+ + +H+ VLL + + L + +D TFG GG+SR +IA+D Sbjct: 1 MTHLNTFSSTEHLTVLLHETVDGLALKENGIYIDGTFGRGGHSRLILSQLSVNGKLIAID 60 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCG 121 RDP AV+ Q+ +F + TFS++ G VDG++ DLGVSS Q+D Sbjct: 61 RDPQAVAEAQKI---QDSRFHIEHNTFSEILPICEKFGLVGKVDGILLDLGVSSPQLDDA 117 Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF K GPLDMRM S GISA++ + Q + +DL +L GEE+ A RIA IV Sbjct: 118 ERGFSFMKDGPLDMRMDSSKGISAAEWLAQVSEQDLAWVLKTFGEERFAKRIAKVIVDYN 177 Query: 181 QSAP------FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234 +SA T L+ LI + V F K+ HPATRSFQA+RI++N E++EL L+S Sbjct: 178 KSAVQNGGEFLARTLQLAELITQAVPF-KDKYKHPATRSFQAIRIYINAELDELENVLQS 236 Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ--SITKKV 292 A L G L V+SFHSLEDR+VK+F +S + + + + + K Sbjct: 237 ALSVLAPKGRLSVISFHSLEDRMVKQFMRKQSQGEVIPKGLPLREDQIQRNRRLKVIGKA 296 Query: 293 VVPTQEDVAFNRRSRSAKLRAGMRT 317 ++P++ ++ N R+RSA LR R Sbjct: 297 IMPSEAEIVQNPRARSAVLRIAERI 321 >gi|53711604|ref|YP_097596.1| S-adenosyl-methyltransferase MraW [Bacteroides fragilis YCH46] gi|253564345|ref|ZP_04841802.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 3_2_5] gi|115311579|sp|Q64ZL4|RSMH_BACFR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|52214469|dbj|BAD47062.1| S-adenosyl-methyltransferase MraW [Bacteroides fragilis YCH46] gi|251948121|gb|EES88403.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 3_2_5] gi|301161374|emb|CBW20914.1| putative S-adenosyl-methyltransferase [Bacteroides fragilis 638R] Length = 304 Score = 363 bits (933), Expect = 2e-98, Method: Composition-based stats. Identities = 108/310 (34%), Positives = 165/310 (53%), Gaps = 16/310 (5%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFA 70 HVPVLL++ + +N +P +D TFG GG+SR G ++ D+D A Sbjct: 3 EEETTYHVPVLLKESVDAMNISPDGTYVDVTFGGGGHSREILSRLGDGGRLLGFDQDEDA 62 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSF 127 E F+ ++ F L +++ VD ++ DLGVSS D +RGFSF Sbjct: 63 -----ERNIVNDPHFTFVRSNFRYLHNFLRYHDIGEVDAILADLGVSSHHFDDSERGFSF 117 Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + G LDMRM+ +GI+A+DVVN + L I + GE K + ++A IVK R + Sbjct: 118 RFDGKLDMRMNKRAGITAADVVNTYEEERLADIFYLYGELKNSRKLASVIVKARTGQKIE 177 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T + +I+ F + + FQALRI VN E+E L + L +A +ALK GG L+ Sbjct: 178 TIGEFLEIIKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLMAATEALKPGGRLV 235 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+++HSLEDR+VK + + + A + + P F+ + KV+VP ++++ N RS Sbjct: 236 VITYHSLEDRMVKNIMKTGNVEGKATQDFFGNLQTP--FRLVNNKVIVPDEDEITRNPRS 293 Query: 307 RSAKLRAGMR 316 RSAKLR + Sbjct: 294 RSAKLRIAEK 303 >gi|261211507|ref|ZP_05925795.1| S-adenosyl-methyltransferase MraW [Vibrio sp. RC341] gi|262404723|ref|ZP_06081278.1| S-adenosyl-methyltransferase MraW [Vibrio sp. RC586] gi|260839462|gb|EEX66088.1| S-adenosyl-methyltransferase MraW [Vibrio sp. RC341] gi|262349755|gb|EEY98893.1| S-adenosyl-methyltransferase MraW [Vibrio sp. RC586] Length = 316 Score = 363 bits (933), Expect = 2e-98, Method: Composition-based stats. Identities = 120/323 (37%), Positives = 175/323 (54%), Gaps = 23/323 (7%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 M+++ H+ VLL + I L P + +D TFG GG+SR+ + ++D Sbjct: 1 MTASFQ-----HISVLLNESIEGLAIKPDGIYIDGTFGRGGHSRTILAQLGPQGRLYSID 55 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCG 121 RDP A++ Q+ +F++ FS + +Y VDGV+FDLGVSS Q+D Sbjct: 56 RDPQAIAEAQKI---DDPRFTIVHGPFSGIAEYAQRYDLVGKVDGVLFDLGVSSPQLDDA 112 Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF K GPLDMRM SG+ S+ + QA++ D+T ++ GE+K A RIA AIV+ R Sbjct: 113 ERGFSFMKDGPLDMRMDPTSGMPVSEWLAQADLDDITWVIREFGEDKHARRIAKAIVEYR 172 Query: 181 QSA---PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 ++ P T L+ LI S + HPATR+FQA RI++N+E+EE+ LR A Sbjct: 173 ENELNEPLTRTSQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALRGASD 232 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSIT-KKVV 293 L G L V+SFHSLEDR+VK+F S + + + T K + Sbjct: 233 ILAPQGRLSVISFHSLEDRMVKRFMRKESQGPQVPHGIPLTQDQIRALGSAKMKTVGKAL 292 Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316 P+ ++V N RSRS+ LR + Sbjct: 293 KPSDQEVELNPRSRSSVLRVAEK 315 >gi|224826070|ref|ZP_03699173.1| S-adenosyl-methyltransferase MraW [Lutiella nitroferrum 2002] gi|224601707|gb|EEG07887.1| S-adenosyl-methyltransferase MraW [Lutiella nitroferrum 2002] Length = 320 Score = 363 bits (933), Expect = 2e-98, Method: Composition-based stats. Identities = 121/320 (37%), Positives = 174/320 (54%), Gaps = 10/320 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPF 69 + + H+ VLL + +A L P V +D TFG GG+SR ++A D+DP Sbjct: 1 MSAPVFSHLTVLLSEAVAALAVRPDGVYVDCTFGRGGHSRLILSQLGPAGRLVAFDKDPE 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFS 126 A+ E + +F+L F L + G VDGV+ DLGVSS QID RGFS Sbjct: 61 AI-AAGERLAAEDPRFTLVHEGFETLARELDRLGIARVDGVLMDLGVSSPQIDDARRGFS 119 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 F+ PLDMRM S G++A++ + A +D+ ++ GEE+ A +IA AIV +R+ AP Sbjct: 120 FRFDAPLDMRMDTSRGLTAAEWLATAAEEDIREVIKTYGEERFARKIAAAIVAQRELAPL 179 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 +TT+ L+ L+ + V + + PATR+FQA+RI++N E+EEL L A + L GG L Sbjct: 180 ETTRQLAQLVGQNVRTREPGQ-DPATRTFQAIRIYINRELEELKAVLPQAAQRLAEGGRL 238 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT-KKVVVPTQEDVAFNR 304 V+SFHSLEDR+VK F S ++ +A T K V + ++V N Sbjct: 239 AVISFHSLEDRIVKNFMRDASSDAKLPSWVMVRSADLPEPPLRTVGKPVRASDDEVNGNP 298 Query: 305 RSRSAKLRAGMRTVERSIED 324 RSRSA +R RT E+ Sbjct: 299 RSRSAIMRIAERTAGAWREE 318 >gi|88657585|ref|YP_507355.1| S-adenosyl-methyltransferase MraW [Ehrlichia chaffeensis str. Arkansas] gi|123493393|sp|Q2GGS8|RSMH_EHRCR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|88599042|gb|ABD44511.1| S-adenosyl-methyltransferase MraW [Ehrlichia chaffeensis str. Arkansas] Length = 297 Score = 363 bits (933), Expect = 2e-98, Method: Composition-based stats. Identities = 133/305 (43%), Positives = 189/305 (61%), Gaps = 14/305 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQET 77 H PVLL +++ +LNP GKV +DATFGAGGY+R+ K V A+D+D ++ Sbjct: 1 MHTPVLLNEMLDILNPQDGKVYVDATFGAGGYTRAILKSANCQVYAIDQDECTNVFYEKL 60 Query: 78 MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + D+ + + FS+++ + K VDG+VFD+GVSSMQ++ RGFSF K GPLD Sbjct: 61 VNDFPGKVHFCVSKFSKIKQILHGAQLKKVDGIVFDIGVSSMQLEDASRGFSFSKDGPLD 120 Query: 135 MRMSCS--GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 MRMS S + AS VN A +++ ++ G EK + +IA AI + R+ P +TT +L+ Sbjct: 121 MRMSTSISNVDASVFVNTAFEEEIANVIYQYGGEKYSRKIAKAIAESRKKKPIKTTGELA 180 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 S+++ + SKN+ I PATR+FQA+RI+VN E+EEL QG+ + L GG +IVVSFHS Sbjct: 181 SIVRSVISRSKNHSIDPATRTFQAIRIWVNKELEELEQGIIDSADLLNPGGKIIVVSFHS 240 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK F S + P FQ I KKV+ P+ E++ N RSRSAKLR Sbjct: 241 LEDRIVKVMFKSLCSGSSVIS--------PIGFQLINKKVIRPSFEEILNNPRSRSAKLR 292 Query: 313 AGMRT 317 A ++ Sbjct: 293 AILKI 297 >gi|160891413|ref|ZP_02072416.1| hypothetical protein BACUNI_03863 [Bacteroides uniformis ATCC 8492] gi|156858820|gb|EDO52251.1| hypothetical protein BACUNI_03863 [Bacteroides uniformis ATCC 8492] Length = 307 Score = 363 bits (933), Expect = 2e-98, Method: Composition-based stats. Identities = 107/312 (34%), Positives = 165/312 (52%), Gaps = 16/312 (5%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69 + H+PVLL + +N P +D TFG GG+SR G +++ D+D Sbjct: 2 MKEETTYHIPVLLMPSVDAMNIRPDGTYVDVTFGGGGHSREILSRLEDGGRLLSFDQDED 61 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFS 126 A E F+ ++ F L +++ G VD ++ DLGVSS D +RGFS Sbjct: 62 A-----ERNIVNNPHFTFVRSNFRYLHNFLRYHGIEKVDAILADLGVSSHHFDDSERGFS 116 Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 F+ G LDMRM+ +G++A+D+VN + L I + GE K + ++A IVK R + Sbjct: 117 FRFDGALDMRMNKRAGLTAADIVNTYEEEKLADIFYLYGELKNSRKLASVIVKARATQRI 176 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 T + +++ F + + FQALRI VN E+E L + L +A +ALK GG L Sbjct: 177 ATIGEFLEIVKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLYAATEALKPGGRL 234 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 +V+++HSLEDR+VK + + + A + + P F+ + KV+VP +E++ N R Sbjct: 235 VVITYHSLEDRMVKNIMKTGNVEGKAEKDFFGNVLTP--FRLVNNKVIVPDEEEIERNPR 292 Query: 306 SRSAKLRAGMRT 317 SRSAKLR R Sbjct: 293 SRSAKLRIAERV 304 >gi|77462648|ref|YP_352152.1| methyltransferase MraW/YabC [Rhodobacter sphaeroides 2.4.1] gi|88909216|sp|Q3J4N3|RSMH_RHOS4 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|77387066|gb|ABA78251.1| methyltransferase MraW/YabC [Rhodobacter sphaeroides 2.4.1] Length = 331 Score = 363 bits (933), Expect = 2e-98, Method: Composition-based stats. Identities = 144/331 (43%), Positives = 200/331 (60%), Gaps = 5/331 (1%) Query: 11 SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPF 69 + H+PVLL ++A + P LD TFGAGGY+R + G+ VI +DRDP Sbjct: 2 AEADTERRPHIPVLLRPLLAAVAPVE-GTWLDGTFGAGGYARGLLEAGADRVIGVDRDPL 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 A+ DY ++ L TFSQL + +DGVV DLGVSSMQ+D +RGFSFQK Sbjct: 61 ALKMASGWAGDYGDRLRLVAGTFSQLDSHAGAP-LDGVVLDLGVSSMQLDLAERGFSFQK 119 Query: 130 SGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 GPLDMRMS G SA+D+VN A+ + L IL GEE+ + RIA AIV+ R +AP T Sbjct: 120 DGPLDMRMSQEGESAADLVNTASEETLADILYHYGEERASRRIARAIVEARAAAPITRTL 179 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ ++ + + K ++HPATRSFQA+RI VN E EL +GL +AE+AL+ GG L VV+ Sbjct: 180 ALAEIVARCLPRPKPGQMHPATRSFQAIRIAVNAEFSELVEGLEAAERALRPGGRLAVVT 239 Query: 250 FHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK+F RS G+ R+ + A F ++ + P + ++A N R+RS Sbjct: 240 FHSLEDRIVKRFLQLRSGGEGQGNRYAPETRADAPRFTLPLRRAISPDEAELAENPRARS 299 Query: 309 AKLRAGMRTVERSIE-DDSFVHLPRLPTLSQ 338 A+LR G+RT + + D + P +P + Sbjct: 300 ARLRVGVRTDAPAGKVDPQALGTPLIPKKGR 330 >gi|332969039|gb|EGK08079.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Kingella kingae ATCC 23330] Length = 321 Score = 363 bits (933), Expect = 2e-98, Method: Composition-based stats. Identities = 108/313 (34%), Positives = 168/313 (53%), Gaps = 10/313 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPF 69 ++ +H+ VLL + +A LN P V +D TFG GG+SR +I D+DP Sbjct: 1 MNTQTFEHITVLLHEAVAALNIQPNGVYVDGTFGRGGHSRLILSQLGEQGRLIVFDKDPQ 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFS 126 A+ + + + S+ F+ + + G +DG +FDLG+SS Q+D G RGFS Sbjct: 61 AIEVA-QKLAQQDARVSVVHNGFATFEAACTNLGLDKIDGALFDLGISSPQVDDGSRGFS 119 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 F+ PLDMRM + G SA++ + A+ +++ ++ GEE+ + +IA IV +R +P Sbjct: 120 FRFDAPLDMRMDTTRGQSAAEWLAVASEQEIHEVIKNYGEERFSRQIARTIVAQRSESPI 179 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT+ L+++ + V S+ ATR+FQA+RIF+N E++E+ Q L L GG L Sbjct: 180 NTTRQLAAITAQCV-RSRERGQDRATRTFQAIRIFINRELDEVEQVLPQVVNRLNVGGRL 238 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 V++FHSLEDR+VK+F S + I P + K + ++V N Sbjct: 239 AVIAFHSLEDRIVKQFMRQHSSHAPLPKWAAIKEADLPQPPLQLIGKASKASVQEVQHNP 298 Query: 305 RSRSAKLRAGMRT 317 R+RSA LR RT Sbjct: 299 RARSAVLRVAERT 311 >gi|283783869|ref|YP_003363734.1| S-adenosyl-L-methionine-dependent methyltransferase [Citrobacter rodentium ICC168] gi|282947323|emb|CBG86868.1| S-adenosyl-L-methionine-dependent methyltransferase [Citrobacter rodentium ICC168] Length = 313 Score = 363 bits (933), Expect = 2e-98, Method: Composition-based stats. Identities = 118/312 (37%), Positives = 180/312 (57%), Gaps = 19/312 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ Q Sbjct: 6 KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAQ 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +FS+ FS L +YV ++ +DG++ DLGVSS Q+D +RGFSF + G Sbjct: 66 TI---NDPRFSIIHGPFSALAEYVAERNLTGRIDGILLDLGVSSPQLDDAERGFSFMRDG 122 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + G SA++ + A D+ +L GEE+ A RIA AIV+R + P T++ Sbjct: 123 PLDMRMDPTRGQSAAEWLQSAEEADIAWVLKTFGEERFAKRIARAIVERNREQPMTRTKE 182 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L GG L ++SF Sbjct: 183 LAEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSIISF 241 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNRR 305 HSLEDR+VK+F +S + + +++ K ++P +++VA N R Sbjct: 242 HSLEDRIVKRFMREQSRGPKVPAGIPMTEEQLSKLGGRELRALGK--LMPGEKEVAENPR 299 Query: 306 SRSAKLRAGMRT 317 +RS+ LR RT Sbjct: 300 ARSSVLRIAERT 311 >gi|315633809|ref|ZP_07889098.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Aggregatibacter segnis ATCC 33393] gi|315477059|gb|EFU67802.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Aggregatibacter segnis ATCC 33393] Length = 322 Score = 363 bits (933), Expect = 2e-98, Method: Composition-based stats. Identities = 124/324 (38%), Positives = 176/324 (54%), Gaps = 20/324 (6%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 MS + +H VLL + + L + +D TFG GG+SR +IA+D Sbjct: 1 MSHLNAFSSAEHATVLLHETVDGLALKENGIYIDGTFGRGGHSRLILSKLSANGRLIAID 60 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCG 121 RDP AV Q+ +F + + FS + +DG++ DLGVSS Q+D Sbjct: 61 RDPKAVVEAQKI---QDSRFHIEHSAFSDILPICEKLNLVGKIDGILLDLGVSSPQLDDA 117 Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF K GPLDMRM S G+SA++ + + +DL +L GEE+ A +IA AIV Sbjct: 118 ERGFSFMKDGPLDMRMDDSKGMSAAEWLQHVSEQDLAWVLKTFGEERFAKKIASAIVNYN 177 Query: 181 QSAP------FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234 +SA T L+ LI +TV F K+ HPATRSFQA+RIF+N+E++EL + L+S Sbjct: 178 KSAVQNGGECLTRTLQLAELIAQTVPF-KDKHKHPATRSFQAIRIFINSELDELEKVLQS 236 Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ--SITKKV 292 A L GG L ++SFHSLEDR+VK F +S + + Q + K Sbjct: 237 ALTVLAPGGRLSIISFHSLEDRMVKHFMRKQSQGEDIPKGLPLREDQIQRNQTLKVIGKA 296 Query: 293 VVPTQEDVAFNRRSRSAKLRAGMR 316 ++P+ E++A N R+RSA LR R Sbjct: 297 IMPSDEEIAQNPRARSAVLRIAER 320 >gi|303228441|ref|ZP_07315274.1| S-adenosyl-methyltransferase MraW [Veillonella atypica ACS-134-V-Col7a] gi|303230798|ref|ZP_07317545.1| S-adenosyl-methyltransferase MraW [Veillonella atypica ACS-049-V-Sch6] gi|302514558|gb|EFL56553.1| S-adenosyl-methyltransferase MraW [Veillonella atypica ACS-049-V-Sch6] gi|302516943|gb|EFL58852.1| S-adenosyl-methyltransferase MraW [Veillonella atypica ACS-134-V-Col7a] Length = 310 Score = 363 bits (933), Expect = 2e-98, Method: Composition-based stats. Identities = 109/307 (35%), Positives = 161/307 (52%), Gaps = 10/307 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQ 75 +HV VLL + + + P + +D T G G++ + +I LD+D A++ + Sbjct: 4 NHVSVLLNETVDSVVTNPDGIYVDCTLGGAGHAHAVGERLSSQGMIIGLDQDEDALAVAR 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + D Q FS L+ + ++G VDG +FDLGVSS Q+D +RGFS+ GP Sbjct: 64 QRLSDLTCQVMTIPTNFSDLKHALEEQGIYEVDGFIFDLGVSSYQLDTPERGFSYMNDGP 123 Query: 133 LDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM +A VVN+ L +I+ GEE+ A RI IV R TT +L Sbjct: 124 LDMRMDKEAPITAEIVVNEYESDKLLQIIRDYGEERWAKRIVEFIVAARNEKRITTTGEL 183 Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 S+I+K + + + HPA R+FQA+RI VN E+ L A LK G + V++F Sbjct: 184 VSIIKKAIPAKARQDGPHPAKRTFQAIRIEVNRELAILHDSFVDAVSMLKPKGRIGVITF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+ K+ F S + + H AV ++ K + P+ +V N RSRSA Sbjct: 244 HSLEDRITKQTFKELSTACICPPELPVCVCHHKAVLKAKN-KAIEPSAGEVEMNPRSRSA 302 Query: 310 KLRAGMR 316 KLR G++ Sbjct: 303 KLRVGIK 309 >gi|152988306|ref|YP_001350328.1| S-adenosyl-methyltransferase MraW [Pseudomonas aeruginosa PA7] gi|262825003|sp|A6VB93|RSMH_PSEA7 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|150963464|gb|ABR85489.1| S-adenosyl-methyltransferase MraW [Pseudomonas aeruginosa PA7] Length = 313 Score = 363 bits (933), Expect = 2e-98, Method: Composition-based stats. Identities = 120/313 (38%), Positives = 180/313 (57%), Gaps = 14/313 (4%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAV 71 + H+ VLLE+ ++ L P LD TFG GG+SR+ + G ++ D+DP A+ Sbjct: 2 NATYRHITVLLEEAVSALAPREDGCYLDGTFGRGGHSRALLEKLGTGGRLLGFDKDPQAI 61 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSF 127 G + + +F + Q +F++L D V +G VDGV+ DLGVSS Q+D +RGFSF Sbjct: 62 QTG-KALAAEDGRFVIVQRSFAELGDEVRARGLEGRVDGVLLDLGVSSPQLDDPERGFSF 120 Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 GPLDMRM+ GISA++ + A +++ R+ GEE+ A R+A AIV+RRQ PF+ Sbjct: 121 LNDGPLDMRMNPGQGISAAEFIASAAEEEIARVFKEYGEERFAKRMARAIVQRRQERPFE 180 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T DL+ +I + + +PATR+FQ LRI VNNE+ +L +GL +A ++L GG L+ Sbjct: 181 RTADLAEVITVANPAWEKGK-NPATRAFQGLRIHVNNELGDLERGLDAALESLAVGGRLV 239 Query: 247 VVSFHSLEDRLVKKFFASRSG---KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 V+SFHSLEDR+VK F + + I S + + K ++ ++ N Sbjct: 240 VISFHSLEDRIVKLFMRKHAKGEADNLPRDLPIRSKVFEPRLKLL-GKPQYASEAELKAN 298 Query: 304 RRSRSAKLRAGMR 316 RSRSA +R + Sbjct: 299 PRSRSAVMRVAEK 311 >gi|218893511|ref|YP_002442380.1| S-adenosyl-methyltransferase MraW [Pseudomonas aeruginosa LESB58] gi|262825031|sp|B7UZJ8|RSMH_PSEA8 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|218773739|emb|CAW29553.1| putative methyltransferase [Pseudomonas aeruginosa LESB58] Length = 313 Score = 363 bits (933), Expect = 2e-98, Method: Composition-based stats. Identities = 120/313 (38%), Positives = 181/313 (57%), Gaps = 14/313 (4%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAV 71 + H+ VLLE+ ++ L P LD TFG GG+SR+ + G ++ D+DP A+ Sbjct: 2 NATYRHITVLLEEAVSALAPREDGCYLDGTFGRGGHSRALLEKLGAGGRLLGFDKDPQAI 61 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSF 127 G + + +F + Q +F++L D V +G +DGV+ DLGVSS Q+D +RGFSF Sbjct: 62 QTG-KALAAEDGRFVIVQRSFAELGDEVRARGLEGRIDGVLLDLGVSSPQLDDPERGFSF 120 Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 GPLDMRM+ GISA++ + A +++ R+ GEE+ A R+A AIV+RRQ PF+ Sbjct: 121 LNDGPLDMRMNPGQGISAAEFIANAAEEEIARVFKEYGEERFAKRMARAIVQRRQERPFE 180 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T DL+ +I + + +PATR+FQ LRI VNNE+ +L +GL +A ++L GG L+ Sbjct: 181 RTADLAEVITVANPAWEKGK-NPATRAFQGLRIHVNNELGDLERGLDAALESLAVGGRLV 239 Query: 247 VVSFHSLEDRLVKKFFASRSG---KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 V+SFHSLEDR+VK F + + I S + + K ++E++ N Sbjct: 240 VISFHSLEDRIVKLFMRKHAKGEADNLPRDLPIRSKVFEPRLKLL-GKPQYASEEELKAN 298 Query: 304 RRSRSAKLRAGMR 316 RSRSA +R + Sbjct: 299 PRSRSAVMRVAEK 311 >gi|270295456|ref|ZP_06201657.1| methylase MraW [Bacteroides sp. D20] gi|317478454|ref|ZP_07937614.1| MraW methylase [Bacteroides sp. 4_1_36] gi|270274703|gb|EFA20564.1| methylase MraW [Bacteroides sp. D20] gi|316905343|gb|EFV27137.1| MraW methylase [Bacteroides sp. 4_1_36] Length = 306 Score = 363 bits (932), Expect = 2e-98, Method: Composition-based stats. Identities = 107/312 (34%), Positives = 165/312 (52%), Gaps = 16/312 (5%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69 + H+PVLL + +N P +D TFG GG+SR G +++ D+D Sbjct: 1 MKEETTYHIPVLLMPSVDAMNIRPDGTYVDVTFGGGGHSREILSRLEDGGRLLSFDQDED 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFS 126 A E F+ ++ F L +++ G VD ++ DLGVSS D +RGFS Sbjct: 61 A-----ERNIVNNPHFTFVRSNFRYLHNFLRYHGIEKVDAILADLGVSSHHFDDSERGFS 115 Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 F+ G LDMRM+ +G++A+D+VN + L I + GE K + ++A IVK R + Sbjct: 116 FRFDGALDMRMNKRAGLTAADIVNTYEEEKLADIFYLYGELKNSRKLASVIVKARATQRI 175 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 T + +++ F + + FQALRI VN E+E L + L +A +ALK GG L Sbjct: 176 ATIGEFLEIVKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLYAATEALKPGGRL 233 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 +V+++HSLEDR+VK + + + A + + P F+ + KV+VP +E++ N R Sbjct: 234 VVITYHSLEDRMVKNIMKTGNVEGKAEKDFFGNVLTP--FRLVNNKVIVPDEEEIERNPR 291 Query: 306 SRSAKLRAGMRT 317 SRSAKLR R Sbjct: 292 SRSAKLRIAERV 303 >gi|238797714|ref|ZP_04641209.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia mollaretii ATCC 43969] gi|238718466|gb|EEQ10287.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia mollaretii ATCC 43969] Length = 320 Score = 363 bits (932), Expect = 2e-98, Method: Composition-based stats. Identities = 121/312 (38%), Positives = 176/312 (56%), Gaps = 15/312 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H VLL++ + LN + +D TFG GG+SR +IA+DRDP A+ + Sbjct: 13 KHTSVLLDEAVNGLNIRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDRDPQAIEAAK 72 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +FS+ FS+L YV + +DG++ DLGVSS Q+D +RGFSF + G Sbjct: 73 SI---TDPRFSIVHGPFSELAHYVRELDLVGRIDGILLDLGVSSPQLDDPERGFSFMRDG 129 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S G+SA++ + +A+ D+ +L GEE+ A R+A AIV+R + P T++ Sbjct: 130 PLDMRMDPSRGLSAAEWLMKASADDIAWVLKTFGEERFAKRLAKAIVERNLTQPMTRTKE 189 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ LI F + ++ HPATRSFQA+RI++N+E+EE+ + L A + L G L V+SF Sbjct: 190 LADLIANASPFREKHK-HPATRSFQAIRIYINSELEEIERALDGAHEVLAPEGRLSVISF 248 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNRRSR 307 HSLEDR+VK F RS + + A T K + +P +VA N R+R Sbjct: 249 HSLEDRIVKNFIRQRSRGPQVPAGLPLTEAQLRSMGGRTMKSIGKMMPADAEVAENPRAR 308 Query: 308 SAKLRAGMRTVE 319 S+ LR R E Sbjct: 309 SSVLRFAERIKE 320 >gi|199598136|ref|ZP_03211558.1| SAM-dependent methyltransferase for cell envelope biogenesis [Lactobacillus rhamnosus HN001] gi|199590897|gb|EDY98981.1| SAM-dependent methyltransferase for cell envelope biogenesis [Lactobacillus rhamnosus HN001] Length = 313 Score = 363 bits (932), Expect = 2e-98, Method: Composition-based stats. Identities = 110/313 (35%), Positives = 156/313 (49%), Gaps = 10/313 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73 T H VLL++ A L +DAT G GG++R +IA D+D A++ Sbjct: 2 TEFKHETVLLKEATAALAVKSDGTYVDATLGRGGHTRQILNQLTNGRLIAFDQDEAAIAA 61 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + Q +L F L + D VDGV++DLGVSS Q D RGFS++ Sbjct: 62 VKRQFGTLPPQLTLVHRNFRDLSAALADLDIRQVDGVLYDLGVSSPQFDDSKRGFSYRFD 121 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM + A +VN+ +L RI GEE + +IA I + R AP TT Sbjct: 122 APLDMRMDQRQTLDAKTIVNEWPYAELVRIFSRYGEEHFSKQIARRIEQARAQAPITTTF 181 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L LI+ + + HPA + FQA+RI VN+E+ L L A K + GG + V+ Sbjct: 182 QLVELIKAGIPAKARRTGGHPAKKVFQAIRIAVNDELSALEASLEQALKLINVGGRISVI 241 Query: 249 SFHSLEDRLVKKFFASRS--GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 +F SLEDRLVK F S V ++P A P +Q + +K ++P+ ++A N R+ Sbjct: 242 TFQSLEDRLVKTMFKEVSTVQDVPRGLPVVPEAAQPH-YQLVNRKPILPSAAELAENHRA 300 Query: 307 RSAKLRAGMRTVE 319 SAKLR + Sbjct: 301 HSAKLRVIEKIRN 313 >gi|238650666|ref|YP_002916519.1| S-adenosyl-methyltransferase MraW [Rickettsia peacockii str. Rustic] gi|259495904|sp|C4K1M0|RSMH_RICPU RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|238624764|gb|ACR47470.1| S-adenosyl-methyltransferase MraW [Rickettsia peacockii str. Rustic] Length = 307 Score = 363 bits (932), Expect = 2e-98, Method: Composition-based stats. Identities = 130/307 (42%), Positives = 185/307 (60%), Gaps = 5/307 (1%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQ 75 I HV V+L K++ L+P G+ LD TFGAGGYS++ + V ALDRDP + + Sbjct: 2 IQSHVSVMLNKMLEALSPKAGESYLDCTFGAGGYSKAILESCNCYVTALDRDPNVIKRAE 61 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 E ++Y E+F + F+ + +K DG+V DLGVSSMQ+D DRGFSF GPLDM Sbjct: 62 EIQQNYGERFDFVETNFAGSFAKLKEKKFDGIVLDLGVSSMQLDIADRGFSFLHDGPLDM 121 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RMS G+SA + VN A K+L ++ G+E + RIA IV+ R++A +T L+ ++ Sbjct: 122 RMSGQGLSAEEFVNAAEAKELADVIYKYGDESFSRRIAKRIVEYRKTARIDSTGKLAEIV 181 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + ++ F K +I PAT++FQA+RI+VN+E+ EL Q L + + LK G L+VVSFHSLED Sbjct: 182 RSSIGFRK-GKIDPATKTFQAIRIYVNDELGELEQFLVNVKNILKKDGRLVVVSFHSLED 240 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNA---HPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 R+VK FF S K + + + IT K + P+ ++V N R+RSAKLR Sbjct: 241 RIVKNFFKENSEKPVVRSKYAKDDMTIDPNKWLKIITNKALAPSDKEVGLNIRARSAKLR 300 Query: 313 AGMRTVE 319 A E Sbjct: 301 AAKAIYE 307 >gi|60679854|ref|YP_209998.1| S-adenosyl-methyltransferase MraW [Bacteroides fragilis NCTC 9343] gi|265764988|ref|ZP_06093263.1| MraW methylase [Bacteroides sp. 2_1_16] gi|81317074|sp|Q5LIJ0|RSMH_BACFN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|60491288|emb|CAH06036.1| putative S-adenosyl-methyltransferase [Bacteroides fragilis NCTC 9343] gi|263254372|gb|EEZ25806.1| MraW methylase [Bacteroides sp. 2_1_16] Length = 304 Score = 363 bits (932), Expect = 2e-98, Method: Composition-based stats. Identities = 107/310 (34%), Positives = 164/310 (52%), Gaps = 16/310 (5%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFA 70 HVPVLL++ + +N +P +D TFG GG+SR G ++ D+D A Sbjct: 3 EEETTYHVPVLLKESVDAMNISPDGTYVDVTFGGGGHSREILSRLGDGGRLLGFDQDEDA 62 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSF 127 E F+ ++ F L +++ VD ++ DLGVSS D +RGFSF Sbjct: 63 -----ERNIVNDPHFTFVRSNFRYLHNFLRYHDIGEVDAILADLGVSSHHFDDSERGFSF 117 Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + G LDMRM+ +GI+A+DVVN + L I + GE K + ++A IVK R + Sbjct: 118 RFDGKLDMRMNKRAGITAADVVNTYEEERLADIFYLYGELKNSRKLASVIVKARTGQKIE 177 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T + +I+ F + + FQALRI VN E+E L + L +A +ALK GG L+ Sbjct: 178 TIGEFLEIIKPL--FGREREKKELAKIFQALRIEVNQEMEALKEMLMAATEALKPGGRLV 235 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+++HSLEDR+VK + + + + + P F+ + KV+VP ++++ N RS Sbjct: 236 VITYHSLEDRMVKNIMKTGNVEGKTTQDFFGNLQTP--FRLVNNKVIVPDEDEITRNPRS 293 Query: 307 RSAKLRAGMR 316 RSAKLR + Sbjct: 294 RSAKLRIAEK 303 >gi|126172646|ref|YP_001048795.1| S-adenosyl-methyltransferase MraW [Shewanella baltica OS155] gi|152998944|ref|YP_001364625.1| S-adenosyl-methyltransferase MraW [Shewanella baltica OS185] gi|160873530|ref|YP_001552846.1| S-adenosyl-methyltransferase MraW [Shewanella baltica OS195] gi|217971625|ref|YP_002356376.1| S-adenosyl-methyltransferase MraW [Shewanella baltica OS223] gi|304411651|ref|ZP_07393263.1| S-adenosyl-methyltransferase MraW [Shewanella baltica OS183] gi|307306297|ref|ZP_07586042.1| S-adenosyl-methyltransferase MraW [Shewanella baltica BA175] gi|262826489|sp|B8E4L2|RSMH_SHEB2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262826490|sp|A3CZL3|RSMH_SHEB5 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262826491|sp|A6WIC3|RSMH_SHEB8 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262826492|sp|A9KY21|RSMH_SHEB9 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|125995851|gb|ABN59926.1| S-adenosyl-methyltransferase MraW [Shewanella baltica OS155] gi|151363562|gb|ABS06562.1| S-adenosyl-methyltransferase MraW [Shewanella baltica OS185] gi|160859052|gb|ABX47586.1| S-adenosyl-methyltransferase MraW [Shewanella baltica OS195] gi|217496760|gb|ACK44953.1| S-adenosyl-methyltransferase MraW [Shewanella baltica OS223] gi|304349839|gb|EFM14245.1| S-adenosyl-methyltransferase MraW [Shewanella baltica OS183] gi|306911170|gb|EFN41597.1| S-adenosyl-methyltransferase MraW [Shewanella baltica BA175] gi|315265760|gb|ADT92613.1| S-adenosyl-methyltransferase MraW [Shewanella baltica OS678] Length = 313 Score = 363 bits (932), Expect = 2e-98, Method: Composition-based stats. Identities = 116/307 (37%), Positives = 170/307 (55%), Gaps = 13/307 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H+ VLL + + LN + +D TFG GG+SR + +IA+DRDP A+ ++ Sbjct: 7 HLSVLLAETVGGLNIKDDGIYIDGTFGRGGHSRQVLQQLGENGRLIAIDRDPQAIEAAKQ 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 D +F + F QL DYV + G +DGV+ DLGVSS Q+D +RGFSF + GP Sbjct: 67 FADD--PRFQIVHGGFGQLADYVEELGLVGKIDGVLLDLGVSSPQLDDAERGFSFMRDGP 124 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G +A+ + +A ++D+ + GEEK A IA I R PF T+DL Sbjct: 125 LDMRMDNSQGQTAAQWLARAEIEDMAWVFKTYGEEKNARHIARCIAADRDKTPFLRTKDL 184 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI + + N+ HPATR FQA+RI++N+E++++ Q L A L G L V+SFH Sbjct: 185 ADLIARITKSKERNK-HPATRVFQAIRIYINSELDQIDQALEGAVNVLAPQGRLSVISFH 243 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI--TKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK+F S + + + K ++P+ E++ N R+RS+ Sbjct: 244 SLEDRIVKRFIRRHSQGESVPHGFPVTEDQINKSRKLRAVGKAIMPSDEEIERNARARSS 303 Query: 310 KLRAGMR 316 LR R Sbjct: 304 VLRIAER 310 >gi|328955350|ref|YP_004372683.1| S-adenosyl-methyltransferase MraW [Coriobacterium glomerans PW2] gi|328455674|gb|AEB06868.1| S-adenosyl-methyltransferase MraW [Coriobacterium glomerans PW2] Length = 321 Score = 363 bits (932), Expect = 2e-98, Method: Composition-based stats. Identities = 118/320 (36%), Positives = 175/320 (54%), Gaps = 12/320 (3%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65 M++ H PV++ +V+ L P VI+D T G G++ + +I +D Sbjct: 1 MANGTLTPEYQHEPVMVAEVLEALRPEESSVIVDCTLGGAGHAVRLAREMGPEGQLIGID 60 Query: 66 RDPFAVSCGQETMRDYKEQF--SLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDC 120 +D A++ + L + F L + + GVDG +FDLGVSS Q+D Sbjct: 61 QDDMALNSAAARLDREVPGVAHRLMKGNFRDLDELLCAAEVPGVDGFLFDLGVSSPQLDI 120 Query: 121 GDRGFSFQKSGPLDMRMSCS--GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178 +RGFS+ + PLDMRM G SA+DVVN + +L RIL GEE+ A IA IV+ Sbjct: 121 PNRGFSYHEDAPLDMRMDPQSGGPSAADVVNGYSEAELIRILHAFGEERFAGAIAREIVR 180 Query: 179 RRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 RR++ P TT +L +I+ + + + HPA RSFQA+RI VN+E++ L GL++A + Sbjct: 181 RRKTKPISTTTELVEVIKAAIPAAARRQGPHPARRSFQAIRIEVNHELDALLIGLQAALR 240 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPT 296 L G + V+S+HSLEDR+VK+ F S S + + + + ITKK +V T Sbjct: 241 WLNPAGRICVISYHSLEDRIVKRLFQSASRGCTCPPDIPVCVCGNVPILKVITKKPLVAT 300 Query: 297 QEDVAFNRRSRSAKLRAGMR 316 E+V N RSRSAK+R M+ Sbjct: 301 TEEVERNPRSRSAKIRVAMK 320 >gi|229552071|ref|ZP_04440796.1| S-adenosyl-methyltransferase [Lactobacillus rhamnosus LMS2-1] gi|229314504|gb|EEN80477.1| S-adenosyl-methyltransferase [Lactobacillus rhamnosus LMS2-1] Length = 313 Score = 363 bits (932), Expect = 3e-98, Method: Composition-based stats. Identities = 110/313 (35%), Positives = 156/313 (49%), Gaps = 10/313 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73 T H VLL++ A L +DAT G GG++R +IA D+D A++ Sbjct: 2 TEFKHETVLLKEATAALAVKSDGTYVDATLGRGGHTRQILNQLTNGRLIAFDQDEAAIAA 61 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + Q +L F L + D VDGV++DLGVSS Q D RGFS++ Sbjct: 62 VKRHFGTLPPQLTLVHRNFRDLSAALADLDIRQVDGVLYDLGVSSPQFDDSKRGFSYRFD 121 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM + A +VN+ +L RI GEE + +IA I + R AP TT Sbjct: 122 APLDMRMDQRQTLDAKTIVNEWPYAELVRIFSRYGEEHFSKQIARRIEQARAQAPITTTF 181 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L LI+ + + HPA + FQA+RI VN+E+ L L A K + GG + V+ Sbjct: 182 QLVELIKAGIPAKARRTGGHPAKKVFQAIRIAVNDELSALEASLEQALKLINVGGRISVI 241 Query: 249 SFHSLEDRLVKKFFASRS--GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 +F SLEDRLVK F S V ++P A P +Q + +K ++P+ ++A N R+ Sbjct: 242 TFQSLEDRLVKTMFKEVSTVQDVPRGLPVVPEAAQPH-YQLVNRKPILPSAAELAENHRA 300 Query: 307 RSAKLRAGMRTVE 319 SAKLR + Sbjct: 301 HSAKLRVIEKIRN 313 >gi|22299615|ref|NP_682862.1| putative methyltransferase [Thermosynechococcus elongatus BP-1] gi|30173039|sp|Q8DH87|RSMH_THEEB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|22295799|dbj|BAC09624.1| tlr2072 [Thermosynechococcus elongatus BP-1] Length = 290 Score = 363 bits (932), Expect = 3e-98, Method: Composition-based stats. Identities = 117/303 (38%), Positives = 169/303 (55%), Gaps = 25/303 (8%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQET 77 H PVL V+ L P G + LDAT G GG++ + V+A+D+DP A++ QE Sbjct: 10 HQPVLAPAVLEALQPKAGGLYLDATVGGGGHTALLLRREPTCRVLAIDQDPMALAAAQEF 69 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 + + ++ + F+ L V + DG++ DLGVSS Q+D +RGFSF+ PLDMRM Sbjct: 70 LAPFGDRVQFWHGNFADLP--VAEPMFDGILADLGVSSAQLDRPERGFSFRFDAPLDMRM 127 Query: 138 SC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 + + ++A+ V+N + ++L I GEE+ A RIA IV RR P TQ+L+ L+ Sbjct: 128 NPANPLTAATVINHYSEQELADIFYEYGEERFARRIARQIVARR---PLNRTQELAQLVA 184 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 + S RIHPATR FQALRI+VN E+ L Q L + LK G + V+SFHSLEDR Sbjct: 185 HCLKASPRQRIHPATRVFQALRIYVNQELAVLDQFLARSPHWLKPTGRIAVISFHSLEDR 244 Query: 257 LVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 VK+ + + + + +T+K +V +V+ N RSRSAKLR +R Sbjct: 245 RVKQAWRAN-----------------PLLEVVTRKPIVADAVEVSLNPRSRSAKLRIAVR 287 Query: 317 TVE 319 T Sbjct: 288 TSA 290 >gi|91228506|ref|ZP_01262428.1| S-adenosyl-methyltransferase [Vibrio alginolyticus 12G01] gi|269967393|ref|ZP_06181453.1| S-adenosyl-methyltransferase mraW [Vibrio alginolyticus 40B] gi|91187940|gb|EAS74250.1| S-adenosyl-methyltransferase [Vibrio alginolyticus 12G01] gi|269827981|gb|EEZ82255.1| S-adenosyl-methyltransferase mraW [Vibrio alginolyticus 40B] Length = 316 Score = 363 bits (932), Expect = 3e-98, Method: Composition-based stats. Identities = 116/316 (36%), Positives = 169/316 (53%), Gaps = 18/316 (5%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72 H+ VLL + I L P V +D TFG GG+SR+ + ++DRDP A++ Sbjct: 3 ETFQHISVLLNESIDGLAIKPDGVYIDGTFGRGGHSRTILSKLGENGRLYSIDRDPQAIA 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128 + +F++ FS + +Y + G VDGV+ DLGVSS Q+D +RGFSF Sbjct: 63 EAGKI---NDPRFTIIHGPFSGIAEYAEEYGLVGKVDGVLLDLGVSSPQLDDAERGFSFM 119 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ---SAP 184 K GPLDMRM SG+ S + +A++ D+T ++ GE+K A RIA AIV R+ + P Sbjct: 120 KDGPLDMRMDPTSGVPVSQWLMEADLDDITWVIREFGEDKHARRIAKAIVAYREDEENEP 179 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 T L+ LI S + HPATR+FQA RI++N+E+EE+ L+ A L G Sbjct: 180 MVRTGQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAASILAPEGR 239 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK----KVVVPTQEDV 300 L V+SFHSLEDR+VK+F S + + S K + P+++++ Sbjct: 240 LSVISFHSLEDRMVKRFIRKESKGPEVPHGIPMTEEQIRALGSANMKAVSKAIKPSKQEI 299 Query: 301 AFNRRSRSAKLRAGMR 316 N RSRS+ LR + Sbjct: 300 EMNPRSRSSVLRIAEK 315 >gi|51473750|ref|YP_067507.1| S-adenosyl-methyltransferase MraW [Rickettsia typhi str. Wilmington] gi|116241372|sp|Q68WG7|RSMH_RICTY RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|51460062|gb|AAU04025.1| S-adenosyl-methyltransferase MraW [Rickettsia typhi str. Wilmington] Length = 306 Score = 363 bits (932), Expect = 3e-98, Method: Composition-based stats. Identities = 122/303 (40%), Positives = 183/303 (60%), Gaps = 5/303 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETM 78 H+PV+L +V+ +L P + LD TFGAGGYS + K +V +LD DP + ++ Sbjct: 5 HIPVMLSEVLEVLAPKGYESYLDCTFGAGGYSNAILKSCYCSVTSLDCDPHVIERVEQIK 64 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138 +DY E+FS + F+ + + DG+V DLGVSSMQ+D RGFSF GPLDMRMS Sbjct: 65 QDYGERFSFIKTNFADSFGKLKQQKFDGIVMDLGVSSMQLDIAGRGFSFLYDGPLDMRMS 124 Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198 G SA + VN A+ ++++ ++ G E + RIA I+K R+ A +T+ L+ +++ + Sbjct: 125 AQGFSAEEFVNTADEEEISDVIYKYGNESLSRRIAKNIIKYRKIARIDSTRKLAEIVRYS 184 Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258 + F K +I AT++FQA+RI++NNE+ EL + L + + LK G L+VVSFHSLEDR+V Sbjct: 185 IGFRK-GKIDSATKTFQAIRIYINNELGELERFLANVKNILKKNGRLVVVSFHSLEDRIV 243 Query: 259 KKFFASRSGKVMAVRHMIPSN---AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 K FF S K +A + IT KV+ P+ +++ N R+RSAKLRA Sbjct: 244 KNFFKENSAKPVARSKYAKDEIKIDQNKWLEIITHKVLTPSSQEIRLNVRARSAKLRAAK 303 Query: 316 RTV 318 + + Sbjct: 304 KIL 306 >gi|119512962|ref|ZP_01632023.1| S-adenosyl-methyltransferase [Nodularia spumigena CCY9414] gi|119462375|gb|EAW43351.1| S-adenosyl-methyltransferase [Nodularia spumigena CCY9414] Length = 302 Score = 363 bits (932), Expect = 3e-98, Method: Composition-based stats. Identities = 116/302 (38%), Positives = 171/302 (56%), Gaps = 26/302 (8%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCGQET 77 HVPVL ++V+ L PG LDAT G GG+SR + ++V A+D+D A+ Q+ Sbjct: 15 HVPVLSQEVVEGLAVRPGGHYLDATVGGGGHSRLILEAATDVRLTAIDQDEDALGAAQKH 74 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 + ++ ++ + FS + DG++ DLGVSS +D +RGFSF+ + LDMRM Sbjct: 75 LAEFGDRVEFIHSNFSAYK--YSPNTFDGILADLGVSSYHLDQPERGFSFRHAANLDMRM 132 Query: 138 SCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 + ++A+DV+N+ + +L I GEE+ + RIA IV++R PF+TT +L+ I Sbjct: 133 NQQQSLTAADVINEWDEAELADIFFKYGEERLSRRIARRIVEKR---PFETTTELAEAIA 189 Query: 197 KTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 +V + RIHPATR FQALRI VN+E++ L L A AL GG + ++SFHSLED Sbjct: 190 YSVPRQYRYGRIHPATRVFQALRIVVNDELKALETFLDQAPNALVPGGRIAIISFHSLED 249 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 R VK + S + + +TKK + +E++A N RSRSAKLR Sbjct: 250 RPVKHGLRNSS-----------------LLKVLTKKPITAKEEELANNPRSRSAKLRIAQ 292 Query: 316 RT 317 R Sbjct: 293 RV 294 >gi|253998164|ref|YP_003050227.1| S-adenosyl-methyltransferase MraW [Methylovorus sp. SIP3-4] gi|253984843|gb|ACT49700.1| S-adenosyl-methyltransferase MraW [Methylovorus sp. SIP3-4] Length = 321 Score = 363 bits (932), Expect = 3e-98, Method: Composition-based stats. Identities = 119/311 (38%), Positives = 172/311 (55%), Gaps = 13/311 (4%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSC 73 + HV VLLE+ +A L P + +D TFG GG+SR + ++ LDRD AVS Sbjct: 13 VSPHVSVLLEEAVAALAIKPNGIYVDGTFGRGGHSRKILEQLGADGRLLGLDRDLAAVSA 72 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + +FS+ FS+L + + + VDGV+ DLG+SS QID G+RGFSF+ Sbjct: 73 ARSI---QDPRFSIHHHHFSELGEVLRAQDIQQVDGVLLDLGISSPQIDEGERGFSFRFD 129 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA-PFQTT 188 GPLDMRM S G +A++ + +A+ + LT ++ GEE+ A ++A AIV R TT Sbjct: 130 GPLDMRMDQSRGQTAAEFLAEASEQQLTGVIKEYGEERFAKQVARAIVAARTGGDALTTT 189 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ ++ + + + PATR+FQALRIF+N E+EEL+ L AL GG L V+ Sbjct: 190 GQLAKVVAGAIPKVEPGQ-DPATRTFQALRIFLNQELEELSLVLPQCLDALAPGGRLAVI 248 Query: 249 SFHSLEDRLVKKFFA-SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 SFHSLEDR+VK+F + + + + P K + P+ ++ N RSR Sbjct: 249 SFHSLEDRIVKRFVRSEQDRDDLPANFPVLAKDLPQPRMMAVGKPIKPSAAEIKRNPRSR 308 Query: 308 SAKLRAGMRTV 318 SA LR RT Sbjct: 309 SAVLRVAERTE 319 >gi|260767165|ref|ZP_05876108.1| S-adenosyl-methyltransferase MraW [Vibrio furnissii CIP 102972] gi|260617839|gb|EEX43015.1| S-adenosyl-methyltransferase MraW [Vibrio furnissii CIP 102972] Length = 316 Score = 363 bits (932), Expect = 3e-98, Method: Composition-based stats. Identities = 125/314 (39%), Positives = 176/314 (56%), Gaps = 22/314 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H+ VLL + I L P + +D TFG GG+SR+ + ++DRDP A++ Q+ Sbjct: 7 HISVLLHESIDGLAIKPDGIYIDGTFGRGGHSRTILSQLGPNGRLYSIDRDPQAIAEAQK 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +F++ FS + +Y VDGV+FDLGVSS Q+D +RGFSF K GP Sbjct: 67 I---DDPRFTIVHGPFSGIAEYAARYELVGKVDGVLFDLGVSSPQLDDAERGFSFMKDGP 123 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---PFQTT 188 LDMRM SG+ SD + QA++ D+T ++ GE+K A RIA AIV R++ P T Sbjct: 124 LDMRMDPTSGMPVSDWLAQADLDDITWVIREFGEDKHARRIAKAIVAYRENEENEPLTRT 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ LI S + HPATR+FQA RI++N+E+EE+ L+ A L G L V+ Sbjct: 184 SQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAASILAPQGRLSVI 243 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHP------AVFQSITKKVVVPTQEDVAF 302 SFHSLEDR+VK+F S K V H IP A +++ K + P++ +VA Sbjct: 244 SFHSLEDRMVKRFMRKES-KGPEVPHGIPLTQEQIRALGSADLKTV-GKAIKPSEHEVAM 301 Query: 303 NRRSRSAKLRAGMR 316 N RSRS+ LR + Sbjct: 302 NPRSRSSVLRIAEK 315 >gi|146305949|ref|YP_001186414.1| S-adenosyl-methyltransferase MraW [Pseudomonas mendocina ymp] gi|262825105|sp|A4XQR6|RSMH_PSEMY RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|145574150|gb|ABP83682.1| S-adenosyl-methyltransferase MraW [Pseudomonas mendocina ymp] Length = 314 Score = 363 bits (932), Expect = 3e-98, Method: Composition-based stats. Identities = 116/315 (36%), Positives = 179/315 (56%), Gaps = 14/315 (4%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69 + + H+ VLL++ + L +D TFG GG+SR G ++ D+DP Sbjct: 1 MTDSTLRHITVLLDEAVEGLAVRADGCYIDGTFGRGGHSRLILHKLGPGGRLLGFDKDPL 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGF 125 A++ G E + +F + Q +F++L D +G V GV+ DLGVSS Q+D +RGF Sbjct: 61 AIATG-EALAAEDGRFVVVQRSFAELGDEAVVRGISGQVSGVLLDLGVSSPQLDDPERGF 119 Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF GPLDMRM+ G+SA+D + A ++ R+L GEE+ A R+A A+V+RR+ P Sbjct: 120 SFLNDGPLDMRMNPDVGVSAADWIATAEEDEIARVLKDYGEERFAKRMARAVVQRREQQP 179 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 F T DL+ ++ + + + +PATR+FQ +RI+VNNE+ +L +GL +A +AL+ GG Sbjct: 180 FTRTADLAKVLTEANPAWEKGK-NPATRAFQGIRIYVNNELGDLERGLDAALEALEVGGR 238 Query: 245 LIVVSFHSLEDRLVKKFFASRSG---KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 L+V+SFHSLEDR+VK+F ++ + I A + I K V ++ Sbjct: 239 LVVISFHSLEDRIVKQFMKRQAKGEADKLPRDLPIIPKAFEPRLKLI-GKPVYAGDAELK 297 Query: 302 FNRRSRSAKLRAGMR 316 N RSRSA +R + Sbjct: 298 ANPRSRSAVMRIAEK 312 >gi|255068190|ref|ZP_05320045.1| S-adenosyl-methyltransferase MraW [Neisseria sicca ATCC 29256] gi|255047532|gb|EET42996.1| S-adenosyl-methyltransferase MraW [Neisseria sicca ATCC 29256] Length = 317 Score = 363 bits (932), Expect = 3e-98, Method: Composition-based stats. Identities = 116/317 (36%), Positives = 172/317 (54%), Gaps = 14/317 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 MS+A + H+ VLL + + L + +D TFG GG+SR +I D Sbjct: 1 MSNAEYQ----HITVLLNEAVDALAVREDGIYVDGTFGRGGHSRLILSRLGSQGRLIVFD 56 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGD 122 +DP A+ + + + + ++ FS Q D + + +DG +FDLG+SS QID G Sbjct: 57 KDPQAIEAA-QKLAEQDGRVTVVHDRFSSFQTTLDKLDIEEIDGALFDLGISSPQIDDGA 115 Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF+ PLDMRM + G+SA++ + A+ +DL ++ GEE+ + +IA AIV +R Sbjct: 116 RGFSFRFDAPLDMRMDPTRGMSAAEWIATASEQDLHEVIKNYGEERFSRQIARAIVAQRT 175 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 +P TT+ L+ L+ + V + + PATR+FQA+RIF+N E+EE+ L LK Sbjct: 176 ESPIDTTRKLAQLVAQNVRTRERGQ-DPATRTFQAVRIFINRELEEVEAVLPQVMGRLKQ 234 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDV 300 GG L V++FHSLEDR+VK+F S R + P K + P E+ Sbjct: 235 GGRLAVIAFHSLEDRIVKQFVKKYSQHPPLPRWAAVKEADLPLPPLKAVGKAIKPGVEET 294 Query: 301 AFNRRSRSAKLRAGMRT 317 A N R+RSA LR RT Sbjct: 295 ASNPRARSAVLRVAERT 311 >gi|255015714|ref|ZP_05287840.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 2_1_7] Length = 305 Score = 363 bits (932), Expect = 3e-98, Method: Composition-based stats. Identities = 108/306 (35%), Positives = 165/306 (53%), Gaps = 17/306 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 HVPV+L + + L+ P + +D TFG GG+SR K + D+D A Sbjct: 9 HVPVMLRESLEGLDIRPDGIYVDVTFGGGGHSREILKRLGSEGELYGFDQDADAEHNI-- 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +F+ ++ F L +++ G VDG++ DLGVSS D DRGFSF+ G Sbjct: 67 ---PADPRFTFVRSNFRYLYNFMRYYGESGEVDGLLADLGVSSHHFDDKDRGFSFRFDGA 123 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ +G +A+D+VN + L + + GE K + ++A +VK R++ +T D Sbjct: 124 LDMRMNTRAGQTAADIVNNYTAEALADVFYLYGELKVSRKLASVLVKARETKKIETIGDF 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ K+ + FQALRI VN+E+ L + LRS + L+ GG L+V+++H Sbjct: 184 LEVIKPFT--GKDKEKKFLAQVFQALRIEVNDEMRALKEMLRSTLRVLRPGGRLVVITYH 241 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDRLVK F + + + + + P F+ + KV+VPT E+V N RSRSAKL Sbjct: 242 SLEDRLVKNFLKTGNFEGKCEQDFFGNVRSP--FRLVNNKVIVPTDEEVERNPRSRSAKL 299 Query: 312 RAGMRT 317 R + Sbjct: 300 RIAEKV 305 >gi|16759115|ref|NP_454732.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29140665|ref|NP_804007.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213052857|ref|ZP_03345735.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213426162|ref|ZP_03358912.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213585689|ref|ZP_03367515.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213858022|ref|ZP_03384993.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|20139004|sp|Q8Z9H4|RSMH_SALTI RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|25302091|pir||AE0517 conserved hypothetical protein STY0140 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16501405|emb|CAD01277.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29136289|gb|AAO67856.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 313 Score = 363 bits (932), Expect = 3e-98, Method: Composition-based stats. Identities = 121/312 (38%), Positives = 183/312 (58%), Gaps = 19/312 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ Q Sbjct: 6 KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAQ 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +FS+ FS L DYV ++ +DG++ DLGVSS Q+D +RGFSF + G Sbjct: 66 TI---NDPRFSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFMRDG 122 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + G SA++ + A D+ +L GEE+ A RIAHAIV+R + P T++ Sbjct: 123 PLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIAHAIVERNREQPMTRTKE 182 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L +GG L ++SF Sbjct: 183 LAEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLASGGRLSIISF 241 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305 HSLEDR+VK+F +S + + A +++ K ++P +++VA N R Sbjct: 242 HSLEDRIVKRFMREQSRGPQVPAGLPMTEAQLKKLGGRELRALGK--LMPGEKEVAENPR 299 Query: 306 SRSAKLRAGMRT 317 +RS+ LR RT Sbjct: 300 ARSSVLRIAERT 311 >gi|262831542|sp|Q07PU1|RSMH_RHOP5 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 332 Score = 363 bits (932), Expect = 3e-98, Method: Composition-based stats. Identities = 152/326 (46%), Positives = 198/326 (60%), Gaps = 8/326 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQETM 78 H+ VL + + L P G V +DATFGAGGYSR+ G+ VI +DRD A++ G + + Sbjct: 9 HISVLGREAVDWLAPRDGGVYVDATFGAGGYSRAILTIDGTRVIGIDRDRTAIAGGFDLV 68 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + +L ++ FSQL + +GV DGVV D+GVSSMQ+D +RGFSF+ GPLDM Sbjct: 69 EQSDGRLTLVESRFSQLAEVCASQGVGQVDGVVMDVGVSSMQLDQAERGFSFRFDGPLDM 128 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RM G SA++V+ A+ DL I I GEE+ + +A AIV R P TT+ L+ L+ Sbjct: 129 RMGHDGFSAAEVIAAASEADLANIFYIFGEERHSRAVARAIVAARAETPIVTTKALADLV 188 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 K V+ SK IHPATRSFQ LRIFVN E++EL L +AE+ LK GG L+VVSFHSLED Sbjct: 189 SKVVH-SKPGEIHPATRSFQGLRIFVNAELDELHLALTAAERVLKPGGRLVVVSFHSLED 247 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 R+VK FFA R RH F +TK+ V P+ E+ A N R+RSAKLRAG Sbjct: 248 RIVKNFFAERGKASSGSRHRPEMAQQQPSFAILTKRPVTPSDEETAANPRARSAKLRAGE 307 Query: 316 RTVERSIEDDSFVHLPRLPTLSQFRG 341 RT + + LP PTL+ G Sbjct: 308 RTAAPAQPE---APLPHWPTLASVMG 330 >gi|115524112|ref|YP_781023.1| methyltransferase [Rhodopseudomonas palustris BisA53] gi|115518059|gb|ABJ06043.1| S-adenosyl-methyltransferase MraW [Rhodopseudomonas palustris BisA53] Length = 400 Score = 362 bits (931), Expect = 3e-98, Method: Composition-based stats. Identities = 152/326 (46%), Positives = 198/326 (60%), Gaps = 8/326 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQETM 78 H+ VL + + L P G V +DATFGAGGYSR+ G+ VI +DRD A++ G + + Sbjct: 77 HISVLGREAVDWLAPRDGGVYVDATFGAGGYSRAILTIDGTRVIGIDRDRTAIAGGFDLV 136 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + +L ++ FSQL + +GV DGVV D+GVSSMQ+D +RGFSF+ GPLDM Sbjct: 137 EQSDGRLTLVESRFSQLAEVCASQGVGQVDGVVMDVGVSSMQLDQAERGFSFRFDGPLDM 196 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RM G SA++V+ A+ DL I I GEE+ + +A AIV R P TT+ L+ L+ Sbjct: 197 RMGHDGFSAAEVIAAASEADLANIFYIFGEERHSRAVARAIVAARAETPIVTTKALADLV 256 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 K V+ SK IHPATRSFQ LRIFVN E++EL L +AE+ LK GG L+VVSFHSLED Sbjct: 257 SKVVH-SKPGEIHPATRSFQGLRIFVNAELDELHLALTAAERVLKPGGRLVVVSFHSLED 315 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 R+VK FFA R RH F +TK+ V P+ E+ A N R+RSAKLRAG Sbjct: 316 RIVKNFFAERGKASSGSRHRPEMAQQQPSFAILTKRPVTPSDEETAANPRARSAKLRAGE 375 Query: 316 RTVERSIEDDSFVHLPRLPTLSQFRG 341 RT + + LP PTL+ G Sbjct: 376 RTAAPAQPE---APLPHWPTLASVMG 398 >gi|292572190|gb|ADE30105.1| S-adenosyl-methyltransferase MraW [Rickettsia prowazekii Rp22] Length = 306 Score = 362 bits (931), Expect = 3e-98, Method: Composition-based stats. Identities = 125/303 (41%), Positives = 186/303 (61%), Gaps = 5/303 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETM 78 H+PV+L +V+A+L P + LD TFGAGGYS + +V +LDRDP + ++ Sbjct: 5 HIPVMLSEVLAVLAPKGYESYLDCTFGAGGYSNAILNSCYCSVTSLDRDPNVIESVEKIK 64 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138 +DY E+F+ + F+ + K DG+V DLGVSSMQ+D DRGFSF GPLDMRMS Sbjct: 65 QDYGERFNFIKTNFADSFRKLKHKKFDGIVMDLGVSSMQLDIADRGFSFLYDGPLDMRMS 124 Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198 G SA + VN A+ +++ ++ G E + RIA +IV+ R++A +T+ L+ +++ + Sbjct: 125 VQGFSAEEFVNTADEEEIADVIYKYGNESLSRRIAKSIVEYRKTARIDSTRKLAEIVRYS 184 Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258 + F K +I AT++FQA+RI++NNE+ EL Q L + + LK G L+VVSFHSLEDR+V Sbjct: 185 IGFRK-GKIDSATKTFQAIRIYINNELGELEQFLANVKNILKKDGRLVVVSFHSLEDRIV 243 Query: 259 KKFFASRSGKVMAVRHMIPSNAH---PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 K FF S K +A + IT KV+ P+ +++ N R+RSAKLRA Sbjct: 244 KNFFKENSEKQVARSKYAKDEIKIDPNKWLKIITPKVLTPSSQEIRLNVRARSAKLRAAK 303 Query: 316 RTV 318 + + Sbjct: 304 KII 306 >gi|317046889|ref|YP_004114537.1| S-adenosyl-methyltransferase MraW [Pantoea sp. At-9b] gi|316948506|gb|ADU67981.1| S-adenosyl-methyltransferase MraW [Pantoea sp. At-9b] Length = 313 Score = 362 bits (931), Expect = 3e-98, Method: Composition-based stats. Identities = 122/315 (38%), Positives = 174/315 (55%), Gaps = 15/315 (4%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAV 71 H VLL++ + LN + +D TFG GG+SR ++A+DRDP A+ Sbjct: 2 QENFKHTTVLLDEAVNALNIREDGIYIDGTFGRGGHSRLILAQLGANGQLLAIDRDPQAI 61 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSF 127 + E +FS+ FS L +YV ++G +DGV+ DLGVSS Q+D +RGFSF Sbjct: 62 AAAAEI---KDSRFSIVHGPFSALAEYVSERGLNGKIDGVLLDLGVSSPQLDDAERGFSF 118 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + GPLDMRM + G SA++ + A D+ +L GEE+ A RIA AIV+R + P Sbjct: 119 MRDGPLDMRMDPTRGQSAAEWLLSAEEADIAFVLKTYGEERFAKRIARAIVERNREQPMT 178 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T++L+ +I K+ HPATRSFQA+RI++N+E+EE+ L+ A L GG L Sbjct: 179 RTKELAEVIAAATPV-KDKFKHPATRSFQAIRIWINSELEEIDIALKGALSVLAPGGRLS 237 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFN 303 V+SFHSLEDRLVK+F +S + + + T +VP +VA N Sbjct: 238 VISFHSLEDRLVKRFMRDQSRGPQVPAGIPMTETQLKALGGRELKTLGKMVPGDAEVADN 297 Query: 304 RRSRSAKLRAGMRTV 318 R+RS+ LR RT Sbjct: 298 PRARSSVLRIAERTA 312 >gi|92116827|ref|YP_576556.1| methyltransferase [Nitrobacter hamburgensis X14] gi|91799721|gb|ABE62096.1| methyltransferase [Nitrobacter hamburgensis X14] Length = 399 Score = 362 bits (931), Expect = 3e-98, Method: Composition-based stats. Identities = 150/325 (46%), Positives = 201/325 (61%), Gaps = 7/325 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQETM 78 HVPVL + +A+L P G V +DATFGAGGYSR+ + VI +DRD A++ G + Sbjct: 75 HVPVLGREAVAMLAPRAGGVYVDATFGAGGYSRAILAVADTRVIGIDRDRSAIAGGFALV 134 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + + +L + FS L +G VDG+V D+GVSSMQ+D DRGFSF+ GPLDM Sbjct: 135 EESGGRLTLVEDRFSNLAAVCAAEGADVVDGIVMDVGVSSMQLDEADRGFSFRLDGPLDM 194 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RMS G +A+DVV +A+ DL I+ I GEE+++ +A AIV R+ AP TT+ L+ ++ Sbjct: 195 RMSGHGPTAADVVARASETDLANIIYIFGEERRSRAVARAIVAARRDAPVATTRALADIV 254 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 K V +K + IHPATR+FQALRIFVN E++EL L +AE+ L+ GG L VVSFHSLED Sbjct: 255 SKVV-RAKPHEIHPATRTFQALRIFVNEELDELIAALAAAERVLRPGGRLAVVSFHSLED 313 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 R+VK FFA R RH F +T++ V QE+V+ N R+RSAKLRA Sbjct: 314 RIVKNFFALRGKTGGGSRHRPEIERAAPSFAILTRRPVTAGQEEVSANPRARSAKLRAAE 373 Query: 316 RTVERSIEDDSFVHLPRLPTLSQFR 340 RT + DD P P+L+ Sbjct: 374 RTAAPATADDGES--PGWPSLANVM 396 >gi|15806866|ref|NP_295589.1| S-adenosyl-methyltransferase MraW [Deinococcus radiodurans R1] gi|20139273|sp|Q9RT99|RSMH_DEIRA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|6459646|gb|AAF11419.1|AE002026_7 conserved hypothetical protein [Deinococcus radiodurans R1] Length = 312 Score = 362 bits (931), Expect = 3e-98, Method: Composition-based stats. Identities = 121/318 (38%), Positives = 173/318 (54%), Gaps = 24/318 (7%) Query: 8 TMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRD 67 S HVPVL +++ L PAPGKV +D T G G++R G+ V +D+D Sbjct: 15 QTESEASPPTFSHVPVLATEIVEALAPAPGKVFVDGTLGGAGHTRLLLGRGATVYGIDQD 74 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRG 124 P+A+ ++ + Q + + + +P G VDG++ D+GVSS Q+D RG Sbjct: 75 PYALDRARQ---AALPGLHVLQGNYRDMAELLPAAGVTQVDGILLDIGVSSFQLDDAGRG 131 Query: 125 FSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 FS+ PLDMRMS SG SA+DVVN + +L ++ GEE+ + RIA IV+ R+ AP Sbjct: 132 FSYHTEAPLDMRMSQSGESAADVVNDLDETELAALIYEYGEERHSRRIARFIVQAREKAP 191 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 +TT L+ +I++ + IHPA R+FQALRI+VN+E+ L GL +AE L GG Sbjct: 192 IETTVQLAEIIKRAYP-GFSKGIHPARRTFQALRIYVNDELGALRDGLSAAEGLLAPGGR 250 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 L V+SFHSLEDR+VK+F V +TK+ +V + + N Sbjct: 251 LAVISFHSLEDRIVKRFLLGSD-----------------VLTPLTKRPIVAAESEQVDNP 293 Query: 305 RSRSAKLRAGMRTVERSI 322 R+RSAKLR G R Sbjct: 294 RARSAKLRVGERAAAPEG 311 >gi|15604423|ref|NP_220941.1| S-adenosyl-methyltransferase MraW [Rickettsia prowazekii str. Madrid E] gi|8134811|sp|Q9ZCY2|RSMH_RICPR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|3861117|emb|CAA15017.1| unknown [Rickettsia prowazekii] Length = 306 Score = 362 bits (931), Expect = 3e-98, Method: Composition-based stats. Identities = 126/303 (41%), Positives = 187/303 (61%), Gaps = 5/303 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETM 78 H+PV+L +V+A+L P + LD TFGAGGYS + +V +LDRDP + ++ Sbjct: 5 HIPVMLSEVLAVLAPKGYESYLDCTFGAGGYSNAILNSCYCSVTSLDRDPNVIESVEKIK 64 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138 +DY E+F+ + F+ + K DG+V DLGVSSMQ+D DRGFSF GPLDMRMS Sbjct: 65 QDYGERFNFIKTNFADSFRKLKHKKFDGIVMDLGVSSMQLDIADRGFSFLYDGPLDMRMS 124 Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198 G SA + VN A+ +++ ++ G E + RIA +IV+ R++A +T+ L+ +++ + Sbjct: 125 VQGFSAEEFVNTADEEEIADVIYKYGNESLSRRIAKSIVEYRKTARIDSTRKLAEIVRYS 184 Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258 + F K +I AT++FQA+RI++NNE+EEL Q L + + LK G L+VVSFHSLEDR+V Sbjct: 185 IGFRK-GKIDSATKTFQAIRIYINNELEELEQFLANVKNILKKDGRLVVVSFHSLEDRIV 243 Query: 259 KKFFASRSGKVMAVRHMIPSNAH---PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 K FF S K +A + IT KV+ P+ +++ N R+RSAKLRA Sbjct: 244 KNFFKENSEKQVARSKYAKDEIKIDPNKWLKIITPKVLTPSSQEIRLNVRARSAKLRAAK 303 Query: 316 RTV 318 + + Sbjct: 304 KII 306 >gi|28897226|ref|NP_796831.1| S-adenosyl-methyltransferase MraW [Vibrio parahaemolyticus RIMD 2210633] gi|153839039|ref|ZP_01991706.1| S-adenosyl-methyltransferase MraW [Vibrio parahaemolyticus AQ3810] gi|260366064|ref|ZP_05778530.1| S-adenosyl-methyltransferase MraW [Vibrio parahaemolyticus K5030] gi|260878319|ref|ZP_05890674.1| S-adenosyl-methyltransferase MraW [Vibrio parahaemolyticus AN-5034] gi|260896408|ref|ZP_05904904.1| S-adenosyl-methyltransferase MraW [Vibrio parahaemolyticus Peru-466] gi|260899187|ref|ZP_05907582.1| S-adenosyl-methyltransferase MraW [Vibrio parahaemolyticus AQ4037] gi|33301414|sp|Q9AJH1|RSMH_VIBPA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|13537263|dbj|BAB40616.1| hypothetical protein [Vibrio parahaemolyticus] gi|28805435|dbj|BAC58715.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi|149747467|gb|EDM58415.1| S-adenosyl-methyltransferase MraW [Vibrio parahaemolyticus AQ3810] gi|308087564|gb|EFO37259.1| S-adenosyl-methyltransferase MraW [Vibrio parahaemolyticus Peru-466] gi|308093183|gb|EFO42878.1| S-adenosyl-methyltransferase MraW [Vibrio parahaemolyticus AN-5034] gi|308107133|gb|EFO44673.1| S-adenosyl-methyltransferase MraW [Vibrio parahaemolyticus AQ4037] gi|308111365|gb|EFO48905.1| S-adenosyl-methyltransferase MraW [Vibrio parahaemolyticus K5030] Length = 316 Score = 362 bits (931), Expect = 3e-98, Method: Composition-based stats. Identities = 116/316 (36%), Positives = 171/316 (54%), Gaps = 18/316 (5%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72 H+ VLL + I L P + +D TFG GG+SR+ + ++DRDP A++ Sbjct: 3 ETFQHISVLLNESIDGLAIKPDGIYIDGTFGRGGHSRTILSKLGPNGRLYSIDRDPQAIA 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + +F++ FS + Y + VDGV+ DLGVSS Q+D +RGFSF Sbjct: 63 EAGKI---DDPRFTIIHGPFSGMAQYAEEYDLVGKVDGVLLDLGVSSPQLDDAERGFSFM 119 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---P 184 K GPLDMRM SGI S + +A++ D+T ++ GE+K A RIA AIV+ R++ P Sbjct: 120 KDGPLDMRMDPTSGIPVSQWLMEADLDDITWVIREFGEDKHARRIARAIVEYRENEENEP 179 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 T L+ LI + S + HPATR+FQA RI++N+E+EE+ L+ A + L G Sbjct: 180 MVRTGQLAKLISEAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAARILAPEGR 239 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT----KKVVVPTQEDV 300 L V+SFHSLEDR+VK+F S + + A S K + P+++++ Sbjct: 240 LSVISFHSLEDRMVKRFIRKESKGPEVPHGIPLTEAQIKELGSANMKTVGKAIKPSKQEI 299 Query: 301 AFNRRSRSAKLRAGMR 316 N RSRS+ LR + Sbjct: 300 DMNPRSRSSVLRIAEK 315 >gi|313203980|ref|YP_004042637.1| s-adenosyL-methyltransferase mraw [Paludibacter propionicigenes WB4] gi|312443296|gb|ADQ79652.1| S-adenosyl-methyltransferase MraW [Paludibacter propionicigenes WB4] Length = 319 Score = 362 bits (931), Expect = 3e-98, Method: Composition-based stats. Identities = 105/322 (32%), Positives = 166/322 (51%), Gaps = 16/322 (4%) Query: 1 MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---M 57 ++ K+ +S++ I H+P LL++ I LN P V +D TFG GG+SR K Sbjct: 3 IKKKNIDAVSTSGAEEIAYHIPALLDETITGLNIKPNGVYVDVTFGGGGHSREILKHLGA 62 Query: 58 GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVS 114 ++ D+D A+ + +F ++ F +++++ G VDG++ DLGVS Sbjct: 63 DGKLLGFDQDEDAIKNTID-----DPRFIFVRSNFRYMKNFLKYHGIDKVDGILADLGVS 117 Query: 115 SMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIA 173 S D +RGFSF+ G LDMRM+ S +A+ ++N + L + + GE + +IA Sbjct: 118 SHHFDEAERGFSFRFDGALDMRMNTKSSFTAAALLNTYTEEQLADVFYLYGELHNSRKIA 177 Query: 174 HAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLR 233 IV R SAPF +++ +F + R FQALRI VN E++ L L Sbjct: 178 RTIVAARNSAPFDRIFPFIEVLKP--FFGREKEKKDMARVFQALRIEVNKEMDVLKALLD 235 Query: 234 SAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV 293 + + L G L V+++HSLEDRLVK F S + + + + P +++ KV+ Sbjct: 236 QSIEVLNPQGRLAVLTYHSLEDRLVKNFIRSGNFEGKLEKDFYGNILAP--LKAVNTKVI 293 Query: 294 VPTQEDVAFNRRSRSAKLRAGM 315 V + +VA N R+RSAKLR Sbjct: 294 VADEAEVARNPRARSAKLRVAE 315 >gi|20139121|sp|Q9AJG9|RSMH_VIBPR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|13537266|dbj|BAB40618.1| hypothetical protein [Vibrio proteolyticus] Length = 316 Score = 362 bits (931), Expect = 3e-98, Method: Composition-based stats. Identities = 118/312 (37%), Positives = 171/312 (54%), Gaps = 18/312 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H+ VLL + I L P + +D TFG GG+SR+ + ++DRDP A++ + Sbjct: 7 HISVLLHESIEGLAIKPDGIYIDGTFGRGGHSRTILSQLGENGRLYSIDRDPQAIAEAKT 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +F++ FS + Y G VDGV+FDLGVSS Q+D +RGFSF K GP Sbjct: 67 I---DDPRFTIVHGPFSGIAHYAKQHGLAGKVDGVLFDLGVSSPQLDDAERGFSFMKDGP 123 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---PFQTT 188 LDMRM SGI S + +A++ D+T ++ GE+K A RIA AIV R++ P + T Sbjct: 124 LDMRMDPTSGIPVSQWLMEADLDDITWVIREFGEDKHARRIAKAIVAYRENEENEPLKRT 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ LI S + HPATR+FQA RI++N+E+EE+ L+ A + L G L V+ Sbjct: 184 SQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAAEILAPQGRLSVI 243 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT----KKVVVPTQEDVAFNR 304 SFHSLEDR+VK+F S + + A S K + P+++++ N Sbjct: 244 SFHSLEDRMVKRFIRKESQGPQVPHGIPMTEAQIQALGSANMKAIGKAIKPSKQEIELNP 303 Query: 305 RSRSAKLRAGMR 316 RSRS+ LR + Sbjct: 304 RSRSSVLRIAEK 315 >gi|313893629|ref|ZP_07827197.1| S-adenosyl-methyltransferase MraW [Veillonella sp. oral taxon 158 str. F0412] gi|313441773|gb|EFR60197.1| S-adenosyl-methyltransferase MraW [Veillonella sp. oral taxon 158 str. F0412] Length = 310 Score = 362 bits (931), Expect = 3e-98, Method: Composition-based stats. Identities = 104/307 (33%), Positives = 164/307 (53%), Gaps = 10/307 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS---FCKMGSNVIALDRDPFAVSCGQ 75 +H VLL + + + P + +D T G G++ + +I LD+D A+S + Sbjct: 4 NHTSVLLRETVDSVVTNPKGIYVDCTLGGAGHAHAVGKMLDPEGMIIGLDQDEDALSVAR 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + D Q FS L++ + + G VDG +FDLGVSS Q+D +RGFS+ GP Sbjct: 64 QRLSDLNCQVLTIPTNFSNLKEALQNAGIYEVDGFIFDLGVSSYQLDTPERGFSYMNDGP 123 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM ++A ++VN+ + + L +I+ GEE+ A RI IV RQ TT +L Sbjct: 124 LDMRMDKDAPLTAEEIVNEYDAEQLLQIIRDYGEERWAKRIVEFIVNARQENRITTTGEL 183 Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I++ + + + HPA R+FQA+RI VN E+ L A LK G + V++F Sbjct: 184 VRIIKQAIPAKARQDGPHPAKRTFQAIRIEVNRELAILHDSFVDAVSMLKPKGKIGVITF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+ K+ F S + + + H AV ++ K + P+ ++ N R+RSA Sbjct: 244 HSLEDRITKQTFKELSTACICPPELPMCACNHKAVVKAKN-KAIEPSAGEIEVNPRARSA 302 Query: 310 KLRAGMR 316 KLR ++ Sbjct: 303 KLRVAIK 309 >gi|297717878|gb|ADI50082.1| S-adenosyl-methyltransferase MraW [Candidatus Odyssella thessalonicensis L13] Length = 314 Score = 362 bits (931), Expect = 3e-98, Method: Composition-based stats. Identities = 133/304 (43%), Positives = 189/304 (62%), Gaps = 7/304 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQET 77 H+PVLL+++ L G + +DATFG GGY+R+ + VIA+DRDP A+ ++ Sbjct: 1 MHIPVLLKEMQEALAIRDGALYIDATFGGGGYTRAILEQANCQVIAVDRDPEAIQRAEQL 60 Query: 78 MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 Y ++ +FQ FS L V + VDGVVFD GVSS QID +RGFSF+ GPLD Sbjct: 61 KAQYPDRLFVFQGVFSDLPSIVEKVPVEKVDGVVFDFGVSSYQIDTPERGFSFRFEGPLD 120 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRMS G SA+D+VN + +DL ++ GEE ++ RIA AIV+ R+ P QTT +L++L Sbjct: 121 MRMSGEGESAADIVNTYSEEDLANVIYTYGEEYRSRRIARAIVELRKVKPIQTTLELANL 180 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 I+ V + + HPAT +FQALRI VNNE+ E+ +GL+ AE L G L+ V+FHSLE Sbjct: 181 IKSRV-GGRPDAQHPATLTFQALRIKVNNELIEIERGLKFAEDFLSTDGRLVAVTFHSLE 239 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNA--HPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 DR+VK F +S + ++P P F + K + P++ +++ N RSRSA+LR Sbjct: 240 DRVVKSFLRQKSVRKQKQSRLLPGEKVPSPPSFHDLYPKGIAPSETEISANPRSRSARLR 299 Query: 313 AGMR 316 A +R Sbjct: 300 AAVR 303 >gi|229514038|ref|ZP_04403500.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae TMA 21] gi|229349219|gb|EEO14176.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae TMA 21] Length = 316 Score = 362 bits (931), Expect = 3e-98, Method: Composition-based stats. Identities = 119/323 (36%), Positives = 173/323 (53%), Gaps = 23/323 (7%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 M+++ H+ VLL + I L P + +D TFG GG+SR+ + ++D Sbjct: 1 MTASFQ-----HISVLLNESIEGLAIKPDGIYIDGTFGRGGHSRTILAQLGPEGRLYSID 55 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCG 121 RDP A++ Q+ +F++ FS + +Y VDGV+FDLGVSS Q+D Sbjct: 56 RDPQAIAEAQKI---DDPRFTIVHGPFSGIAEYAQRYDLVGKVDGVLFDLGVSSPQLDDA 112 Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF K GPLDMRM SG+ S + QA++ D+T ++ GE+K A RIA AIV+ R Sbjct: 113 ERGFSFMKDGPLDMRMDPTSGMPVSAWLAQADLDDITWVIREFGEDKHARRIAKAIVEYR 172 Query: 181 QSA---PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 ++ P T L+ LI S + HPATR+FQA RI++N+E+EE+ L A Sbjct: 173 ENELNEPLTRTSQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALCGASD 232 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSIT-KKVV 293 L G L V+SFHSLEDR+VK+F S + + + T K + Sbjct: 233 ILAPQGRLSVISFHSLEDRMVKRFMRKESQGPQVPHGIPLTQDQIRALGSAKMKTVGKAL 292 Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316 P+ ++V N RSRS+ LR + Sbjct: 293 KPSDQEVELNPRSRSSVLRVAEK 315 >gi|83592294|ref|YP_426046.1| s-adenosyl-methyltransferase MraW [Rhodospirillum rubrum ATCC 11170] gi|123753270|sp|Q2RVT6|RSMH_RHORT RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|83575208|gb|ABC21759.1| methyltransferase [Rhodospirillum rubrum ATCC 11170] Length = 326 Score = 362 bits (931), Expect = 3e-98, Method: Composition-based stats. Identities = 137/318 (43%), Positives = 195/318 (61%), Gaps = 11/318 (3%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSC 73 + + H PV+L++V++ L P + +D TFG GGYSR + VIA+DRDP A Sbjct: 2 NALTPHFPVMLDEVLSALEPHADGLYVDGTFGNGGYSRGLLERADCRVIAIDRDPAARVR 61 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130 G ++ +F+L F ++ + +G+ DGV DLGVSSMQ+D +RGFSFQK Sbjct: 62 GAALEAEFPGRFTLLSGCFGDMEQLLAAEGISRIDGVALDLGVSSMQLDQAERGFSFQKD 121 Query: 131 GPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 GPLDMRM G +A+D+VN + L IL GEE+++ +AHAIV+RR PF T D Sbjct: 122 GPLDMRMGQQGQTAADLVNTLDEDRLADILYHYGEERKSRWVAHAIVERRAETPFSRTAD 181 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+++I+ V S++ I PATRSFQALRI VN+E+ EL + L ++E+ L+AGG L+VV+F Sbjct: 182 LATVIRGVVRKSRDG-IDPATRSFQALRIVVNDELGELERALGASERLLRAGGRLVVVAF 240 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIP------SNAHPAVFQSITKKVVVPTQEDVAFNR 304 HSLEDR+VK F R G+ V +P + P FQ+++++ V P + N Sbjct: 241 HSLEDRIVKAFVRQRCGESEGVSRHLPQASNAGAGNPPPSFQAVSRRAVKPLDAETRVNP 300 Query: 305 RSRSAKLRAGMRTVERSI 322 RSRSA+LRA RT + Sbjct: 301 RSRSARLRAVERTEFPAW 318 >gi|121602081|ref|YP_989236.1| S-adenosyl-methyltransferase MraW [Bartonella bacilliformis KC583] gi|263445982|sp|A1UTD3|RSMH_BARBK RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|120614258|gb|ABM44859.1| S-adenosyl-methyltransferase MraW [Bartonella bacilliformis KC583] Length = 331 Score = 362 bits (931), Expect = 3e-98, Method: Composition-based stats. Identities = 158/321 (49%), Positives = 213/321 (66%), Gaps = 3/321 (0%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+PVLLE V+A L P G ++D TFGAGGY+R+ G+NV ALDRDP A+ G+ + Sbjct: 11 HIPVLLEPVLAGLAPLSGATVIDGTFGAGGYTRALLNAGANVTALDRDPHAIREGKPLVD 70 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 + + L Q FSQL + + VD V+ D+GVSSMQ+D +RGFSFQK GPLDMRM+ Sbjct: 71 QFFPRLRLVQTEFSQLDRVIEE-KVDAVILDIGVSSMQLDEAERGFSFQKDGPLDMRMAQ 129 Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199 +G+SASDVVN + DL +I ILGEE+ +SRIA I KRR+ PF T+DL+ I+ + Sbjct: 130 TGLSASDVVNHLKIDDLIQIFRILGEERHSSRIAKMIEKRRRIRPFLRTRDLAHEIEVLI 189 Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259 +RIHPATR FQALRI+VN+E+ EL +GL +AE+ LKAGG L VVSFHSLEDR+VK Sbjct: 190 GRKPGDRIHPATRVFQALRIYVNDELNELTRGLFAAERVLKAGGRLGVVSFHSLEDRIVK 249 Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319 KFF+ SG R++ + PA F + K ++E++ N R+RSA+LR G+RT Sbjct: 250 KFFSFCSGNRKGSRYLPEVESAPATFFPLFKGGKTASEEELQKNPRARSARLRIGIRTQV 309 Query: 320 RSIEDDSFVHLPRLPTLSQFR 340 ++E D + L L ++ F Sbjct: 310 DAMEAD--MKLFGLKEIANFE 328 >gi|91776629|ref|YP_546385.1| methyltransferase [Methylobacillus flagellatus KT] gi|123078758|sp|Q1GYZ3|RSMH_METFK RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|91710616|gb|ABE50544.1| methyltransferase [Methylobacillus flagellatus KT] Length = 321 Score = 362 bits (931), Expect = 3e-98, Method: Composition-based stats. Identities = 122/323 (37%), Positives = 175/323 (54%), Gaps = 17/323 (5%) Query: 9 MSSAIHH----TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NV 61 MS+ I H + HV VLLE+ + L+ P V +D TFG GG+SR + + Sbjct: 1 MSAGISHVPAAQVSQHVTVLLEEAVEALSIKPDGVYVDGTFGRGGHSRKILEKLGAQGRL 60 Query: 62 IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQI 118 +ALDRD A+ Q +F + + F+ + + VDGV+ DLG+SS QI Sbjct: 61 VALDRDLAAIQAAQ---GIQDARFKIVHSHFAAMAQVLASLNIQQVDGVLLDLGISSPQI 117 Query: 119 DCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177 D G+RGFSF+ GPLDMRM S G +A++ + A ++LTR++ GEE+ A +IA AIV Sbjct: 118 DEGERGFSFRFDGPLDMRMDQSRGQTAAEFIATATEQELTRVIKEYGEERFAKQIARAIV 177 Query: 178 KRRQSAP-FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236 +R TT L+ ++ V + + PATR+FQALRIF+N E+EEL+ L Sbjct: 178 AQRAGGMDISTTGQLAKIVAGAVPKVEPGQ-DPATRTFQALRIFINQELEELSLTLPQCL 236 Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI-TKKVVVP 295 L G L V+SFHSLEDR+VK+F + H + + + + V P Sbjct: 237 SLLAPQGRLAVISFHSLEDRIVKRFIRGEQDRDNLPAHFPVRASDLPQPRLVAIGRAVRP 296 Query: 296 TQEDVAFNRRSRSAKLRAGMRTV 318 ++++V N RSRSA LR RT Sbjct: 297 SEDEVRRNPRSRSAVLRVAERTA 319 >gi|33151483|ref|NP_872836.1| S-adenosyl-methyltransferase MraW [Haemophilus ducreyi 35000HP] gi|42559455|sp|Q7VP62|RSMH_HAEDU RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|33147703|gb|AAP95225.1| S-adenosyl-methyltransferase MraW [Haemophilus ducreyi 35000HP] Length = 313 Score = 362 bits (931), Expect = 3e-98, Method: Composition-based stats. Identities = 115/316 (36%), Positives = 177/316 (56%), Gaps = 16/316 (5%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69 ++ T H+ VLL + + L P + +D TFG GG+SR +IA+DRDP Sbjct: 1 MNETDHKHITVLLHEAVDGLAIKPNGIYIDGTFGRGGHSRLILSRLATNGRLIAIDRDPC 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGF 125 A++ +F + FS + + G +DG++ DLGVSS Q+D +RGF Sbjct: 61 AIAEANTI---SDARFQIIHTAFSAIPEVCESLGLMGKIDGILLDLGVSSPQLDDAERGF 117 Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-- 182 SF + GPLDMRM + G+SA++ + Q +++DL +L GEE+ A RIA A+V ++ Sbjct: 118 SFMRDGPLDMRMDTTKGLSAAEWLAQVSIEDLAWVLKTFGEERFAKRIAQAVVSYNKTNS 177 Query: 183 APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 T L+ +I V F K+ HPATRSFQA+RIF+N E++EL + L +A + L Sbjct: 178 EKITRTLQLAKIIADAVPF-KDKHKHPATRSFQAIRIFINRELDELEKALTNALRVLAPE 236 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGK--VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300 G L ++SFHSLEDR+VK+F S V ++ + + + +I K ++P++ ++ Sbjct: 237 GRLSIISFHSLEDRMVKQFMKKNSKGEVVPKGLPILEAELNKNIPLNIIGKAIMPSEAEI 296 Query: 301 AFNRRSRSAKLRAGMR 316 N RSRSA LR + Sbjct: 297 VANARSRSAVLRIAAK 312 >gi|312143945|ref|YP_003995391.1| S-adenosyl-methyltransferase MraW [Halanaerobium sp. 'sapolanicus'] gi|311904596|gb|ADQ15037.1| S-adenosyl-methyltransferase MraW [Halanaerobium sp. 'sapolanicus'] Length = 310 Score = 362 bits (931), Expect = 3e-98, Method: Composition-based stats. Identities = 112/308 (36%), Positives = 166/308 (53%), Gaps = 10/308 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 +H VLL + I LN V LD T G GG+S K +IA+DRD A+ + Sbjct: 4 EHKAVLLNEAIKYLNIKEDGVYLDGTLGRGGHSFEILKKLSEHGKLIAIDRDIEAIKAVR 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + L A F + VDG++FDLGVSS Q+D +RGFS+QK GP Sbjct: 64 EK-QPENSSLILEHANFLDFDKVLNKHSISKVDGMLFDLGVSSPQLDNAERGFSYQKDGP 122 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ + ++A+D+VN + K+L +I+ GEE A RIA IV+ R+ + T +L Sbjct: 123 LDMRMNQNQALTAADIVNNYSQKELIKIISDYGEENWAVRIAEFIVEARKKEEIERTSEL 182 Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+ V ++ HPA R+FQALRI N+E+ +L + ++ + L GG ++++SF Sbjct: 183 VEIIKAAVPKGARRGGGHPARRTFQALRIATNDELNQLQKLIKKSVSFLNKGGRIVIISF 242 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK F + I + + IT+ + + +V N R+RSA Sbjct: 243 HSLEDRIVKHSFRELAKDCTCPPDFPICVCDKVSHVKVITRSPIEAKKNEVDSNPRARSA 302 Query: 310 KLRAGMRT 317 KLRA + Sbjct: 303 KLRAAEKI 310 >gi|313901510|ref|ZP_07834958.1| S-adenosyl-methyltransferase MraW [Thermaerobacter subterraneus DSM 13965] gi|313468223|gb|EFR63689.1| S-adenosyl-methyltransferase MraW [Thermaerobacter subterraneus DSM 13965] Length = 383 Score = 362 bits (931), Expect = 3e-98, Method: Composition-based stats. Identities = 123/307 (40%), Positives = 172/307 (56%), Gaps = 15/307 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H+PVLL +V+A L P G +D T GAGG++ + + ++ +DRDP A++ Sbjct: 66 HIPVLLAEVLAYLQPERGGRFVDGTVGAGGHAAAILEAAGEAGRLLGIDRDPQALALAAA 125 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + ++ L F L ++ G VDG++ DLGVSSMQ+D RGFS+Q PL Sbjct: 126 RLAPFGDRVRLVHGDFRDLGRHLAAAGWKAVDGILLDLGVSSMQLDDPARGFSYQVDAPL 185 Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S +A+D+VN A+ L R + GEE+ A RIA IV RQ P TT L Sbjct: 186 DMRMDPSQPVTAADLVNTASRDQLARWIAEYGEERWAGRIADFIVAARQRRPITTTLQLV 245 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ V + HPA R+FQALRI VNNE+E L L+ A L+ GG L+V+SFH Sbjct: 246 EVIKDAVPARARRRGGHPARRTFQALRIAVNNELEGLEAFLQEAAGYLRPGGRLVVISFH 305 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR VK+ F + + + + A F+ +T++ V P E+ N R+RSAKL Sbjct: 306 SLEDRAVKRAFRALAAPQVGGKEG-------AAFRILTRRPVTPGDEEERRNPRARSAKL 358 Query: 312 RAGMRTV 318 RA R Sbjct: 359 RALERVA 365 >gi|293366856|ref|ZP_06613532.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Staphylococcus epidermidis M23864:W2(grey)] gi|291319157|gb|EFE59527.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Staphylococcus epidermidis M23864:W2(grey)] Length = 304 Score = 362 bits (931), Expect = 4e-98, Method: Composition-based stats. Identities = 99/301 (32%), Positives = 159/301 (52%), Gaps = 9/301 (2%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRD 80 +L + I LN V +D T G G++ +IA+D+D A+ +E +++ Sbjct: 1 MLNETIDYLNIKEDGVYVDCTLGGAGHALYLLNQLNDKGRLIAIDQDLTAIENAKEVLKE 60 Query: 81 YKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 + + + F +L + + + + VDG+ +DLGVSS Q+D +RGFS+ LDMRM Sbjct: 61 HLHKVTFVHNNFRELTNILNELEIEKVDGIYYDLGVSSPQLDVPERGFSYHNDAKLDMRM 120 Query: 138 SCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 + +SA +VVNQ + + L RI GEEK + +IA I R+ P +TT +L +I+ Sbjct: 121 DQTQSLSAYEVVNQWSYEALVRIFFRYGEEKFSKQIARRIEAHREQQPIETTLELVDVIK 180 Query: 197 KTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + + + HPA R FQA+RI VN+E+ + A + +K GG + V++FHSLED Sbjct: 181 EGIPAKARRKGGHPAKRVFQAIRIAVNDELSAFEDSVEQAIECVKVGGRISVITFHSLED 240 Query: 256 RLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 RL K+ F R + A+ + + +K + T +D+ N R+RSAKLR Sbjct: 241 RLCKQIFQEFEKGPDVPRGLPVIPEAYTPKLKRVNRKPITATDDDLNDNNRARSAKLRVA 300 Query: 315 M 315 Sbjct: 301 E 301 >gi|269960233|ref|ZP_06174608.1| S-adenosyl-methyltransferase mraW [Vibrio harveyi 1DA3] gi|269835040|gb|EEZ89124.1| S-adenosyl-methyltransferase mraW [Vibrio harveyi 1DA3] Length = 316 Score = 362 bits (931), Expect = 4e-98, Method: Composition-based stats. Identities = 119/316 (37%), Positives = 169/316 (53%), Gaps = 18/316 (5%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72 H+ VLL + I L P + +D TFG GG+SR+ + ++DRDP A++ Sbjct: 3 ETFQHISVLLNESIDGLAIKPDGIYIDGTFGRGGHSRTILSKLGENGRLYSIDRDPQAIA 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128 E + +F++ FS + Y D G VDGV+ DLGVSS Q+D +RGFSF Sbjct: 63 ---EAAKIDDPRFTIIHGPFSGMAQYAEDYGLVGKVDGVLLDLGVSSPQLDDAERGFSFM 119 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ---SAP 184 K GPLDMRM SGI S + +A++ D+T ++ GE+K A RIA AIV R+ + P Sbjct: 120 KDGPLDMRMDPTSGIPVSQWLMEADLDDITWVIREFGEDKHARRIAKAIVAYREDEENEP 179 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 T L+ LI S + HPATR+FQA RI++N+E+EE+ L+ A L G Sbjct: 180 MVRTGQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAASILAPEGR 239 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV----VPTQEDV 300 L V+SFHSLEDR+VK+F S + + S K + PT++++ Sbjct: 240 LSVISFHSLEDRMVKRFIRKESKGPEVPHGIPMTEEQIRALGSANMKPIGKANKPTKQEI 299 Query: 301 AFNRRSRSAKLRAGMR 316 N RSRS+ LR + Sbjct: 300 DMNPRSRSSVLRIAEK 315 >gi|15601999|ref|NP_245071.1| S-adenosyl-methyltransferase MraW [Pasteurella multocida subsp. multocida str. Pm70] gi|20139143|sp|Q9CPB4|RSMH_PASMU RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|12720349|gb|AAK02218.1| unknown [Pasteurella multocida subsp. multocida str. Pm70] Length = 321 Score = 362 bits (931), Expect = 4e-98, Method: Composition-based stats. Identities = 122/324 (37%), Positives = 174/324 (53%), Gaps = 20/324 (6%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M+ H + H+ VLL + +A L + +D TFG GG+SR +IA+D Sbjct: 1 MNDKDHFSSPAHITVLLNEAVAGLALKEKGIYIDGTFGRGGHSRLILSRLADNGRLIAID 60 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCG 121 RDP A++ + +F + +FS + VDG++ DLGVSS Q+D Sbjct: 61 RDPRAIAEAKTI---QDPRFHIEHRSFSDIPRICERLNLVGKVDGILLDLGVSSPQLDEA 117 Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF K GPLDMRM + G+SAS+ + Q + +DL +L GEE+ A RIA AIV Sbjct: 118 ERGFSFMKDGPLDMRMDTTQGLSASEWLQQVSEQDLAWVLKTFGEERFAKRIAQAIVNYN 177 Query: 181 QS------APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234 + P T L+ LI V F K+ HPATRSFQA+RIF+N E++EL L+S Sbjct: 178 KQALQHGTEPLSRTLQLAELIANAVPF-KDKHKHPATRSFQAIRIFINAELDELESVLKS 236 Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ--SITKKV 292 A + L G L ++SFHSLEDR+VK F +S + + + Q + K Sbjct: 237 AVQVLAPQGRLAIISFHSLEDRMVKHFMRKQSKGEDIPKGLPLRDDQIQRTQTLKVIGKA 296 Query: 293 VVPTQEDVAFNRRSRSAKLRAGMR 316 ++PT+++ N RSRSA LR + Sbjct: 297 IMPTEQEQQQNPRSRSAVLRVAEK 320 >gi|218886065|ref|YP_002435386.1| S-adenosyl-methyltransferase MraW [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|263446322|sp|B8DP86|RSMH_DESVM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|218757019|gb|ACL07918.1| S-adenosyl-methyltransferase MraW [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 361 Score = 362 bits (930), Expect = 4e-98, Method: Composition-based stats. Identities = 123/323 (38%), Positives = 173/323 (53%), Gaps = 11/323 (3%) Query: 8 TMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIAL 64 ++S+ HVPVLL++V+ L P PG LD T G GG+S + + + L Sbjct: 14 SVSTEGARAATLHVPVLLDEVLEALAPRPGGRYLDGTVGLGGHSAAIMERIGPDGELCCL 73 Query: 65 DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCG 121 DRD A+ ++ + + + F ++ + + G VDG + D+GVSSMQID Sbjct: 74 DRDTTALGLARQRLAPWGGRVHFFHTRYADFEAALDQLGWDKVDGALIDIGVSSMQIDMA 133 Query: 122 DRGFSFQKSGPLDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 DRGFSF GPLDMRM G AS +VN+A V L I+ GE+ A RIA AIV Sbjct: 134 DRGFSFHADGPLDMRMDRDGDEAPASRLVNRATVDVLKDIILRYGEDPMAGRIARAIVDA 193 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 R + P +TT L++++ + +R HPATR+FQALR+ VN+E+ +L + L Sbjct: 194 RAAGPIETTAQLAAIVDRAYPAKWRATSRNHPATRTFQALRMAVNDELGQLERFLDRILD 253 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPT 296 L GG L V++FHSLEDR+VK S + R + H A +T+K V T Sbjct: 254 RLNPGGRLAVITFHSLEDRIVKHRLRDESQGCVCPRSVSRCECGHKARVDVLTRKPVTAT 313 Query: 297 QEDVAFNRRSRSAKLRAGMRTVE 319 ++A N R+ SAKLRA R E Sbjct: 314 DAELARNSRASSAKLRAAQRLAE 336 >gi|241760229|ref|ZP_04758325.1| S-adenosyl-methyltransferase MraW [Neisseria flavescens SK114] gi|241319340|gb|EER55805.1| S-adenosyl-methyltransferase MraW [Neisseria flavescens SK114] Length = 320 Score = 362 bits (930), Expect = 4e-98, Method: Composition-based stats. Identities = 112/317 (35%), Positives = 173/317 (54%), Gaps = 15/317 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 MS ++ HV VLL + + L + +D TFG GG+SR ++ D Sbjct: 1 MSKVENYQ---HVTVLLHEAVDALAIRKDGIYVDGTFGRGGHSRLILSRLSEQGRLVVFD 57 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGD 122 +DP A++ E + ++ S+ F Q + + G+D G +FDLG+SS QID G Sbjct: 58 KDPEAIAVANE-LAKQDKRVSVVHNGFETFQTALDELGIDKIDGALFDLGISSPQIDDGS 116 Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF+ PLDMRM + G+SA++ + A+ +DL ++ GEE+ + +IA AIV +R+ Sbjct: 117 RGFSFRFDAPLDMRMDPTRGMSAAEWIATASEQDLHEVIKNYGEERFSRQIARAIVAQRE 176 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 +P TT+ L+ L+ + V + + PATR+FQA+RIF+N E+EE+ L LK Sbjct: 177 ESPIDTTRKLAQLVAQNVRTRERGQ-DPATRTFQAVRIFINRELEEVEAVLPQVAGRLKE 235 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQED 299 GG L V++FHSLEDR+VK+F S R + ++ +++ K + P + Sbjct: 236 GGRLAVIAFHSLEDRIVKQFIKKYSQHAPLPRWAVVKEADLPQPPLKAV-GKAIKPGSTE 294 Query: 300 VAFNRRSRSAKLRAGMR 316 N R+RSA LR R Sbjct: 295 TEANPRARSAVLRVAER 311 >gi|58617225|ref|YP_196424.1| S-adenosyl-methyltransferase MraW [Ehrlichia ruminantium str. Gardel] gi|68565410|sp|Q5FH93|RSMH_EHRRG RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|58416837|emb|CAI27950.1| S-adenosyl-methyltransferase mraW [Ehrlichia ruminantium str. Gardel] Length = 301 Score = 362 bits (930), Expect = 4e-98, Method: Composition-based stats. Identities = 129/303 (42%), Positives = 187/303 (61%), Gaps = 11/303 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQETM 78 H PVLL++++ +L+P G + +DATFG+GGYSR+ V A+D+D + + ++ Sbjct: 3 HTPVLLKEMLDILSPQNGGIYVDATFGSGGYSRAILNSADCQVYAIDQDEYTYTFYEKLS 62 Query: 79 RDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 D+ + F FS++Q + + K VDGVVFD+GVSSMQ++ RGFSF K+GPLDM Sbjct: 63 HDFPNRIHFFINKFSKIQQILNNVQIKKVDGVVFDIGVSSMQLEDASRGFSFSKNGPLDM 122 Query: 136 RMSCS--GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 RMS S G+ A VN + ++ ++ G EK + +IA AIV R TT +L+S Sbjct: 123 RMSTSLSGVDARMFVNTVSEVEIANVIYQYGGEKYSRKIARAIVNARNKNMINTTGELAS 182 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 +I+ V SKN+ I PATR+FQA+RI+VN E+EEL +G+ A L GG +IV+SFHSL Sbjct: 183 IIRSVVSRSKNHSIDPATRTFQAIRIWVNKELEELEKGIACAANILNQGGKIIVISFHSL 242 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 EDR+VK F ++ + FQ I KK++ PT E++ N R+RSAKLRA Sbjct: 243 EDRIVKVMFK-----LLCDGKSVNLLNLGLGFQLINKKIIRPTAEEIHSNPRARSAKLRA 297 Query: 314 GMR 316 ++ Sbjct: 298 ILK 300 >gi|225077130|ref|ZP_03720329.1| hypothetical protein NEIFLAOT_02185 [Neisseria flavescens NRL30031/H210] gi|224951541|gb|EEG32750.1| hypothetical protein NEIFLAOT_02185 [Neisseria flavescens NRL30031/H210] Length = 320 Score = 362 bits (930), Expect = 4e-98, Method: Composition-based stats. Identities = 112/317 (35%), Positives = 172/317 (54%), Gaps = 15/317 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 MS ++ HV VLL + + L + +D TFG GG+SR ++ D Sbjct: 1 MSKVENYQ---HVTVLLHEAVDALAIREDGIYVDGTFGRGGHSRLILSRLGEQGRLVVFD 57 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGD 122 +DP A++ E + ++ S+ F Q + + G+D G +FDLG+SS QID G Sbjct: 58 KDPEAIAVANE-LAAQDKRVSVVHNGFETFQTALDELGIDKIDGALFDLGISSPQIDDGS 116 Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF+ PLDMRM + G+SA++ + A+ +DL ++ GEE+ + +IA AIV +R+ Sbjct: 117 RGFSFRFDAPLDMRMDPTRGMSAAEWIATASEQDLHEVIKNYGEERFSRQIARAIVAQRE 176 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 +P TT L+ L+ + V + + PATR+FQA+RIF+N E+EE+ L LK Sbjct: 177 ESPIDTTHKLAQLVAQNVRTRERGQ-DPATRTFQAVRIFINRELEEVEAVLPQVAGRLKE 235 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQED 299 GG L V++FHSLEDR+VK+F S R + ++ +++ K + P + Sbjct: 236 GGRLAVIAFHSLEDRIVKQFIKKYSQHAPLPRWAVVKEADLPQPPLKAV-GKAIKPGSTE 294 Query: 300 VAFNRRSRSAKLRAGMR 316 N R+RSA LR R Sbjct: 295 TEANPRARSAVLRVAER 311 >gi|57239214|ref|YP_180350.1| S-adenosyl-methyltransferase MraW [Ehrlichia ruminantium str. Welgevonden] gi|58579172|ref|YP_197384.1| S-adenosyl-methyltransferase MraW [Ehrlichia ruminantium str. Welgevonden] gi|68565416|sp|Q5HB44|RSMH_EHRRW RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|57161293|emb|CAH58214.1| putative S-adenosyl-methyltransferase MraW [Ehrlichia ruminantium str. Welgevonden] gi|58417798|emb|CAI27002.1| S-adenosyl-methyltransferase mraW [Ehrlichia ruminantium str. Welgevonden] Length = 301 Score = 362 bits (930), Expect = 4e-98, Method: Composition-based stats. Identities = 129/303 (42%), Positives = 187/303 (61%), Gaps = 11/303 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQETM 78 H PVLL++++ +L+P G + +DATFG+GGYSR+ V A+D+D + + ++ Sbjct: 3 HTPVLLKEMLDILSPQNGGIYVDATFGSGGYSRAILNSADCQVYAIDQDEYTYTFYEKLS 62 Query: 79 RDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 D+ + F FS++Q + + K VDGVVFD+GVSSMQ++ RGFSF K+GPLDM Sbjct: 63 NDFPNRIHFFINKFSKIQQILNNVQIKKVDGVVFDIGVSSMQLEDASRGFSFSKNGPLDM 122 Query: 136 RMSCS--GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 RMS S G+ A VN + ++ ++ G EK + +IA AIV R TT +L+S Sbjct: 123 RMSTSLSGVDARMFVNTVSEVEMANVIYQYGGEKYSRKIARAIVNARNKNMINTTGELAS 182 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 +I+ V SKN+ I PATR+FQA+RI+VN E+EEL +G+ A L GG +IV+SFHSL Sbjct: 183 IIRSVVSRSKNHSIDPATRTFQAIRIWVNKELEELEKGIACAANILNQGGKIIVISFHSL 242 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 EDR+VK F ++ + FQ I KK++ PT E++ N R+RSAKLRA Sbjct: 243 EDRIVKVIFK-----LLCDGKSVNLLNLGLGFQLINKKIIRPTAEEIHSNPRARSAKLRA 297 Query: 314 GMR 316 ++ Sbjct: 298 ILK 300 >gi|159900036|ref|YP_001546283.1| S-adenosyl-methyltransferase MraW [Herpetosiphon aurantiacus ATCC 23779] gi|263456121|sp|A9B518|RSMH_HERA2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|159893075|gb|ABX06155.1| S-adenosyl-methyltransferase MraW [Herpetosiphon aurantiacus ATCC 23779] Length = 337 Score = 362 bits (930), Expect = 4e-98, Method: Composition-based stats. Identities = 113/336 (33%), Positives = 184/336 (54%), Gaps = 30/336 (8%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSC 73 + H+PVL + +A LN P +D T G G+S + ++A+D+DP A++ Sbjct: 2 VSMHIPVLYDAALAALNLRPDGRYIDGTLGWAGHSSGILEGSGPTGRLLAIDQDPMALAA 61 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E + Y E+ ++ + Q+ G VDG++ D+GVSS Q+D +RGFSFQ Sbjct: 62 ARERLAPYGERATIVHGNYRQMASLAAQHGWQQVDGILLDIGVSSPQLDLPERGFSFQYD 121 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM+ + G SA+D++ Q + L ++ GEE+ + RIA IV++R +P +T Sbjct: 122 APLDMRMNPTRGESAADLIAQLDETSLANLIYEYGEERLSRRIARRIVEQRSKSPITSTA 181 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+SL++ V + + HPATR+FQALRI VN+E+ L +GL +A L GG L V++ Sbjct: 182 QLASLVKSAV-GGQAGKTHPATRTFQALRIAVNDELGALREGLAAATNLLAPGGRLAVIT 240 Query: 250 FHSLEDRLVKKFFASRSGKVMAV--------RHMIPSNAHP--------------AVFQS 287 FHSLEDR+VK++ ++ + + H +N P + Sbjct: 241 FHSLEDRIVKEWMRDQASECLIPAKLEILACPHNCAANTGPRSCIYPVGRDCDYVPTLEV 300 Query: 288 ITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIE 323 +++K + T E++ N R+RSAKLR R + +++ Sbjct: 301 LSRKPIEATPEELKANPRARSAKLRVAERRLTKTLA 336 >gi|291616264|ref|YP_003519006.1| MraW [Pantoea ananatis LMG 20103] gi|291151294|gb|ADD75878.1| MraW [Pantoea ananatis LMG 20103] gi|327392716|dbj|BAK10138.1| S-adenosyl-methyltransferase MraW [Pantoea ananatis AJ13355] Length = 313 Score = 362 bits (930), Expect = 4e-98, Method: Composition-based stats. Identities = 122/312 (39%), Positives = 174/312 (55%), Gaps = 19/312 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H VLL++ + LN + +D TFG GG+SR +IA+DRDP A++ Sbjct: 6 KHTTVLLDEAVNGLNIKEDGIYIDGTFGRGGHSRLILAQLGASGKLIAIDRDPQAIAAAA 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E +FS+ FS L DYV ++ +DG++ DLGVSS Q+D +RGFSF + G Sbjct: 66 EI---KDPRFSIVHGPFSALADYVAERELVGRIDGILLDLGVSSPQLDDAERGFSFMRDG 122 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + G SA++ + QA D+ +L GEE+ A RIA AIV+R + P T++ Sbjct: 123 PLDMRMDPTRGHSAAEWLKQAEEADIAFVLKTYGEERFAKRIARAIVERNREQPMTRTKE 182 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ +I K+ HPATRSFQA+RI++N+E+EE+ L+ A + L G L V+SF Sbjct: 183 LAEVIAAATPI-KDKFKHPATRSFQAIRIWINSELEEIDTALKGAVEVLAPQGRLSVISF 241 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNRR 305 HSLEDRLVK+F +S R + + + K +VP +V N R Sbjct: 242 HSLEDRLVKRFMRDQSRGPQVPRGLPMTEQQLNALGGRQLTLLGK--MVPGDAEVKENPR 299 Query: 306 SRSAKLRAGMRT 317 +RS+ LR RT Sbjct: 300 ARSSVLRIAERT 311 >gi|261253815|ref|ZP_05946388.1| S-adenosyl-methyltransferase MraW [Vibrio orientalis CIP 102891] gi|260937206|gb|EEX93195.1| S-adenosyl-methyltransferase MraW [Vibrio orientalis CIP 102891] Length = 324 Score = 362 bits (930), Expect = 4e-98, Method: Composition-based stats. Identities = 120/324 (37%), Positives = 171/324 (52%), Gaps = 23/324 (7%) Query: 8 TMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIAL 64 TM+ A H+ VLL + I L P + +D TFG GG+SR+ + ++ Sbjct: 8 TMTEAF-----KHISVLLHESIDGLAIKPDGIYIDGTFGRGGHSRTILSKLGDNGRLYSI 62 Query: 65 DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDC 120 DRDP A++ + +F++ FS + Y + VDGV+ DLGVSS Q+D Sbjct: 63 DRDPQAIAEAGKI---DDPRFTIIHGPFSGMAQYAAEYDLVGKVDGVLLDLGVSSPQLDD 119 Query: 121 GDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFSF K GPLDMRM SGI S + +A++ D+T ++ GE+K A RIA AIV Sbjct: 120 AERGFSFMKDGPLDMRMDPTSGIPVSQWLMEADLDDITWVIREFGEDKHARRIAKAIVAY 179 Query: 180 RQSA---PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236 R++ P T L+ LI S + HPATRSFQA RI++N+E+EE+ L+ A Sbjct: 180 RENEENEPMTRTGQLAKLISDAAPKSFKEKKHPATRSFQAFRIYINSELEEIDTALKGAA 239 Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT----KKV 292 L G L V+SFHSLEDR+VK+F S + + S K Sbjct: 240 SILAPEGRLSVISFHSLEDRMVKRFIRKESKGPEVPHGIPMTEDQIKALGSANLKPVGKA 299 Query: 293 VVPTQEDVAFNRRSRSAKLRAGMR 316 + P++++V N RSRS+ LR + Sbjct: 300 IKPSKQEVEENTRSRSSVLRIAEK 323 >gi|27364047|ref|NP_759575.1| 16S rRNA m(4)C1402 methyltranserfase [Vibrio vulnificus CMCP6] gi|37678790|ref|NP_933399.1| S-adenosyl-methyltransferase MraW [Vibrio vulnificus YJ016] gi|320157431|ref|YP_004189810.1| rRNA small subunit methyltransferase H [Vibrio vulnificus MO6-24/O] gi|30173038|sp|Q8DEK2|RSMH_VIBVU RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|42559438|sp|Q7MNV9|RSMH_VIBVY RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|27360164|gb|AAO09102.1| S-adenosyl-methyltransferase MraW [Vibrio vulnificus CMCP6] gi|37197531|dbj|BAC93370.1| predicted S-adenosylmethionine-dependent methyltransferase [Vibrio vulnificus YJ016] gi|319932743|gb|ADV87607.1| rRNA small subunit methyltransferase H [Vibrio vulnificus MO6-24/O] Length = 316 Score = 362 bits (930), Expect = 4e-98, Method: Composition-based stats. Identities = 117/316 (37%), Positives = 168/316 (53%), Gaps = 18/316 (5%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72 H+ VLL + I L P + +D TFG GG+SR+ + ++DRDP A++ Sbjct: 3 DTFQHISVLLHESIDGLAIKPDGIYIDGTFGRGGHSRTILSKLGEHGRLYSIDRDPQAIA 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + +F++ FS + +Y VDGV+ DLGVSS Q+D +RGFSF Sbjct: 63 EAGKI---DDPRFTIIHGPFSGMANYAEQYDLVGKVDGVLLDLGVSSPQLDDAERGFSFM 119 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ---SAP 184 K GPLDMRM SGI S + +A++ D+T ++ GE+K A RIA AIV R+ P Sbjct: 120 KDGPLDMRMDPTSGIPVSQWLMEADLDDITWVIREFGEDKHARRIAKAIVAHREDETKEP 179 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 T L+ LI + S + HPATR+FQA RI++N+E+EE+ L+ A L G Sbjct: 180 LTRTSQLAKLISEAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAASILAPEGR 239 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT----KKVVVPTQEDV 300 L V+SFHSLEDR+VK+F S + + A S K ++PT +++ Sbjct: 240 LSVISFHSLEDRMVKRFMRKESKGPEVPHGIPLTEAQIKALGSANMKTVGKAIMPTAQEI 299 Query: 301 AFNRRSRSAKLRAGMR 316 N RSRS+ LR + Sbjct: 300 ELNPRSRSSVLRIAEK 315 >gi|329954177|ref|ZP_08295272.1| S-adenosyl-methyltransferase MraW [Bacteroides clarus YIT 12056] gi|328528154|gb|EGF55134.1| S-adenosyl-methyltransferase MraW [Bacteroides clarus YIT 12056] Length = 305 Score = 362 bits (930), Expect = 5e-98, Method: Composition-based stats. Identities = 105/313 (33%), Positives = 164/313 (52%), Gaps = 16/313 (5%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPF 69 + H+PVLL + +N P +D TFG GG+SR G ++ D+D Sbjct: 1 MKEETTYHIPVLLMPSVDGMNIRPDGTYVDVTFGGGGHSREIVSRLGEGGRLLGFDQDED 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFS 126 A F+ ++ F L +++ G VD V+ DLGVSS D +RGFS Sbjct: 61 AEQNIVN-----DPHFTFVRSNFRYLHNFLRYHGIGQVDAVLADLGVSSHHFDDSERGFS 115 Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 F+ G LDMRM+ +G++A+D+VN + + L I + GE K + ++A IVK R + Sbjct: 116 FRFDGALDMRMNKRAGLTAADIVNTYDEERLADIFYLYGELKNSRKLASVIVKARATRKI 175 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 T + +I+ F + + FQALRI VN E+E L + L +A +ALK GG L Sbjct: 176 GTIGEFLDIIKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLYAATEALKPGGRL 233 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 +V+++HSLEDR+VK + + + A + + P F+ + KV++P +++ N R Sbjct: 234 VVITYHSLEDRMVKNIMKTGNIEGKAEKDFFGNVQTP--FRLVNNKVIIPDDDEIERNPR 291 Query: 306 SRSAKLRAGMRTV 318 SRSAKLR + + Sbjct: 292 SRSAKLRIAEKII 304 >gi|262273821|ref|ZP_06051634.1| S-adenosyl-methyltransferase MraW [Grimontia hollisae CIP 101886] gi|262222236|gb|EEY73548.1| S-adenosyl-methyltransferase MraW [Grimontia hollisae CIP 101886] Length = 317 Score = 362 bits (930), Expect = 5e-98, Method: Composition-based stats. Identities = 121/317 (38%), Positives = 178/317 (56%), Gaps = 23/317 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H+ VLL + I L P + +D TFG GG++R + + ++DRDP A+ + Sbjct: 7 HISVLLHESIDGLALKPDGIYVDGTFGRGGHTREILRRLGENGRLYSIDRDPQAIEEAGK 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +F++ FS +Q Y+ +G +DGV+ DLGVSS Q+D +RGFSF + GP Sbjct: 67 I---DDPRFNIIHGPFSGIQQYMEARGLSGKIDGVLLDLGVSSPQLDDPERGFSFMRDGP 123 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ---SAPFQTT 188 LDMRM SGI AS + +A+ D+ +L GEE+ A RIA AIV R+ P T Sbjct: 124 LDMRMDPTSGIPASQWLAEADADDIAWVLKEFGEERFAKRIARAIVAHREDETKEPLTRT 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L++LI S++ + HPATR FQA+RI++N+E+EE+ ++ A + L GG L ++ Sbjct: 184 LQLANLIASVSP-SRDRKKHPATRCFQAIRIYINSELEEIETAMQGALEVLAPGGRLSII 242 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH------PAVFQSITKKVVVPTQEDVAF 302 SFHSLEDRLVK+F +S K V H +P A + + K + P+ +V+ Sbjct: 243 SFHSLEDRLVKRFIRKQS-KGPDVPHGVPLTEEQIRALGQAKMKPV-GKALKPSDVEVSD 300 Query: 303 NRRSRSAKLRAGMRTVE 319 N RSRS+ LR + E Sbjct: 301 NTRSRSSVLRVAEKLGE 317 >gi|261881137|ref|ZP_06007564.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Prevotella bergensis DSM 17361] gi|270332142|gb|EFA42928.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Prevotella bergensis DSM 17361] Length = 337 Score = 362 bits (930), Expect = 5e-98, Method: Composition-based stats. Identities = 112/307 (36%), Positives = 164/307 (53%), Gaps = 18/307 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA---VSC 73 HVPVLL++ + L+ P +D TFG GG+SR ++ + D+D A +S Sbjct: 38 HVPVLLKESVDGLDIKPDGTYVDVTFGGGGHSREILSRLHQDGHLYSFDQDADAEQNLSG 97 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130 ET+ + F+ ++ F L++++ GV DG++ DLGVSS D RGFSF+ Sbjct: 98 SGETL----DNFTFVRSNFRYLKNWMRYYGVEHIDGLLADLGVSSHHFDDEARGFSFRFD 153 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM+ G +A+DVVN + L I + GE K + RIA +VK R TTQ Sbjct: 154 APLDMRMNKRGGQTAADVVNNYEEEQLADIFYLYGELKSSRRIASVLVKERNQGKILTTQ 213 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 D + +Q F + + FQALRI VN E+ L + L +A L GG L V++ Sbjct: 214 DFVNAVQPL--FRRGREKKDMAKLFQALRIEVNQEMAALREMLTAATDLLAPGGRLSVIT 271 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 +HSLEDR+VK + + + + P F+ + KV+VP+ E++A N RSRSA Sbjct: 272 YHSLEDRMVKNMMKTGNAEGKLRQDFFGRVECP--FRLVNNKVIVPSDEELARNPRSRSA 329 Query: 310 KLRAGMR 316 KLR + Sbjct: 330 KLRIAEK 336 >gi|22127508|ref|NP_670931.1| S-adenosyl-methyltransferase MraW [Yersinia pestis KIM 10] gi|45443369|ref|NP_994908.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar Microtus str. 91001] gi|51595030|ref|YP_069221.1| S-adenosyl-methyltransferase MraW [Yersinia pseudotuberculosis IP 32953] gi|108809545|ref|YP_653461.1| S-adenosyl-methyltransferase MraW [Yersinia pestis Antiqua] gi|108810578|ref|YP_646345.1| S-adenosyl-methyltransferase MraW [Yersinia pestis Nepal516] gi|150260418|ref|ZP_01917146.1| S-adenosyl-methyltransferase [Yersinia pestis CA88-4125] gi|153947578|ref|YP_001402352.1| S-adenosyl-methyltransferase MraW [Yersinia pseudotuberculosis IP 31758] gi|162419065|ref|YP_001607303.1| S-adenosyl-methyltransferase MraW [Yersinia pestis Angola] gi|165928201|ref|ZP_02224033.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar Orientalis str. F1991016] gi|165937803|ref|ZP_02226364.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar Orientalis str. IP275] gi|166008805|ref|ZP_02229703.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar Antiqua str. E1979001] gi|166212069|ref|ZP_02238104.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar Antiqua str. B42003004] gi|167401265|ref|ZP_02306765.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167422048|ref|ZP_02313801.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426442|ref|ZP_02318195.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167470126|ref|ZP_02334830.1| S-adenosyl-methyltransferase MraW [Yersinia pestis FV-1] gi|170025741|ref|YP_001722246.1| S-adenosyl-methyltransferase MraW [Yersinia pseudotuberculosis YPIII] gi|186894036|ref|YP_001871148.1| S-adenosyl-methyltransferase MraW [Yersinia pseudotuberculosis PB1/+] gi|218927743|ref|YP_002345618.1| S-adenosyl-methyltransferase MraW [Yersinia pestis CO92] gi|229837062|ref|ZP_04457227.1| S-adenosyl-dependent methyltransferase protein with activity on membrane-located substrates [Yersinia pestis Pestoides A] gi|229840435|ref|ZP_04460594.1| S-adenosyl-dependent methyltransferase protein with activity on membrane-located substrates [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843023|ref|ZP_04463173.1| S-adenosyl-dependent methyltransferase protein with activity on membrane-located substrates [Yersinia pestis biovar Orientalis str. India 195] gi|229900770|ref|ZP_04515894.1| S-adenosyl-dependent methyltransferase protein with activity on membrane-located substrates [Yersinia pestis Nepal516] gi|270487860|ref|ZP_06204934.1| S-adenosyl-methyltransferase MraW [Yersinia pestis KIM D27] gi|294502635|ref|YP_003566697.1| S-adenosyl-methyltransferase [Yersinia pestis Z176003] gi|20139012|sp|Q8ZIF7|RSMH_YERPE RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|85542907|sp|Q66EL3|RSMH_YERPS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|122979342|sp|Q1C206|RSMH_YERPA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|123246757|sp|Q1CMN5|RSMH_YERPN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263504671|sp|A7FM74|RSMH_YERP3 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263504678|sp|B2K4D8|RSMH_YERPB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263504680|sp|A9R132|RSMH_YERPG RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263504693|sp|B1JK89|RSMH_YERPY RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|21960606|gb|AAM87182.1|AE013965_9 putative apolipoprotein [Yersinia pestis KIM 10] gi|45438238|gb|AAS63785.1| Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Yersinia pestis biovar Microtus str. 91001] gi|51588312|emb|CAH19920.1| S-adenosyl-dependent methyl transferase [Yersinia pseudotuberculosis IP 32953] gi|108774226|gb|ABG16745.1| hypothetical protein YPN_0413 [Yersinia pestis Nepal516] gi|108781458|gb|ABG15516.1| hypothetical protein YPA_3554 [Yersinia pestis Antiqua] gi|115346354|emb|CAL19226.1| conserved hypothetical protein [Yersinia pestis CO92] gi|149289826|gb|EDM39903.1| S-adenosyl-methyltransferase [Yersinia pestis CA88-4125] gi|152959073|gb|ABS46534.1| S-adenosyl-methyltransferase MraW [Yersinia pseudotuberculosis IP 31758] gi|162351880|gb|ABX85828.1| S-adenosyl-methyltransferase MraW [Yersinia pestis Angola] gi|165914215|gb|EDR32831.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar Orientalis str. IP275] gi|165919812|gb|EDR37113.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar Orientalis str. F1991016] gi|165992144|gb|EDR44445.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar Antiqua str. E1979001] gi|166206815|gb|EDR51295.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar Antiqua str. B42003004] gi|166960185|gb|EDR56206.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049290|gb|EDR60698.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054540|gb|EDR64348.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169752275|gb|ACA69793.1| S-adenosyl-methyltransferase MraW [Yersinia pseudotuberculosis YPIII] gi|186697062|gb|ACC87691.1| S-adenosyl-methyltransferase MraW [Yersinia pseudotuberculosis PB1/+] gi|229682109|gb|EEO78201.1| S-adenosyl-dependent methyltransferase protein with activity on membrane-located substrates [Yersinia pestis Nepal516] gi|229689899|gb|EEO81958.1| S-adenosyl-dependent methyltransferase protein with activity on membrane-located substrates [Yersinia pestis biovar Orientalis str. India 195] gi|229696801|gb|EEO86848.1| S-adenosyl-dependent methyltransferase protein with activity on membrane-located substrates [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706005|gb|EEO92014.1| S-adenosyl-dependent methyltransferase protein with activity on membrane-located substrates [Yersinia pestis Pestoides A] gi|262360665|gb|ACY57386.1| S-adenosyl-methyltransferase [Yersinia pestis D106004] gi|262364611|gb|ACY61168.1| S-adenosyl-methyltransferase [Yersinia pestis D182038] gi|270336364|gb|EFA47141.1| S-adenosyl-methyltransferase MraW [Yersinia pestis KIM D27] gi|294353094|gb|ADE63435.1| S-adenosyl-methyltransferase [Yersinia pestis Z176003] gi|320016913|gb|ADW00485.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 320 Score = 362 bits (929), Expect = 5e-98, Method: Composition-based stats. Identities = 120/314 (38%), Positives = 176/314 (56%), Gaps = 19/314 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H VLL++ + LN + +D TFG GG+SR +IA+DRDP A+ + Sbjct: 13 KHTSVLLDEAVKGLNIRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDRDPEAIEAAK 72 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +FS+ FS L YV D +DG++ DLGVSS Q+D +RGFSF + G Sbjct: 73 QI---TDPRFSIVHGPFSDLAHYVRDLDLVGRIDGILLDLGVSSPQLDDAERGFSFMRDG 129 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S G+SA++ + +A+ D+ +L GEE+ A R+A AIV+R + P T++ Sbjct: 130 PLDMRMDPSRGLSAAEWLMKASADDIAWVLKTFGEERFAKRLAKAIVERNLTQPMTRTKE 189 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ LI F ++ HPATRSFQA+RI++N+E+EE+ + L A + L G L V+SF Sbjct: 190 LADLIANASPF-RDKHKHPATRSFQAIRIYINSELEEIERALDGAHEVLAPEGRLSVISF 248 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNRR 305 HSLEDR+VK F S + + A +S+ K ++P ++A N R Sbjct: 249 HSLEDRIVKNFIRHHSRGPQVPAGLPLTEAQLRSMGGRTLKSVGK--MMPGDAEIAENPR 306 Query: 306 SRSAKLRAGMRTVE 319 +RS+ LR R E Sbjct: 307 ARSSVLRFAERIGE 320 >gi|257784283|ref|YP_003179500.1| S-adenosyl-methyltransferase MraW [Atopobium parvulum DSM 20469] gi|257472790|gb|ACV50909.1| S-adenosyl-methyltransferase MraW [Atopobium parvulum DSM 20469] Length = 327 Score = 362 bits (929), Expect = 5e-98, Method: Composition-based stats. Identities = 115/309 (37%), Positives = 171/309 (55%), Gaps = 12/309 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H PV+L +V+ L+P PG+V+ D T G G++ K+ I +D+D A Sbjct: 14 HQPVMLAEVLRELDPKPGEVVCDCTLGGAGHTVEMAKLIAPDGLSIGIDQDAMAHQAAAA 73 Query: 77 TMRDYKEQ--FSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++ F + F L + + GVD +FD+GVSS Q+D +RGFS+ + Sbjct: 74 RLKQEVPNAEFLPLKGNFGDLDELLVSAEVPGVDCFLFDIGVSSPQLDIPERGFSYHEDA 133 Query: 132 PLDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM +A +V+N N DL RIL I G+EK ASRIA IV+ R+ P QTT Sbjct: 134 PLDMRMDPGKQTPTAQEVINTYNEADLARILRIYGDEKFASRIARRIVQTREKRPIQTTF 193 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L +I+ + + + + HPA ++FQALRI VN+E+E L +GLRSA GG + V+ Sbjct: 194 ELVEVIKAAIPAAARRHGGHPARKTFQALRIEVNHELEVLERGLRSAIAWANPGGRICVI 253 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 S+HSLEDR+VK F+ S + + + IT+K +V T E++ N R+R Sbjct: 254 SYHSLEDRIVKHVFSELSQGCICPPDLPVCMCGQVPIVDVITRKPLVATPEEIERNPRAR 313 Query: 308 SAKLRAGMR 316 SA +R ++ Sbjct: 314 SALMRVAVK 322 >gi|261379351|ref|ZP_05983924.1| S-adenosyl-methyltransferase MraW [Neisseria subflava NJ9703] gi|284797791|gb|EFC53138.1| S-adenosyl-methyltransferase MraW [Neisseria subflava NJ9703] Length = 320 Score = 362 bits (929), Expect = 5e-98, Method: Composition-based stats. Identities = 112/317 (35%), Positives = 173/317 (54%), Gaps = 15/317 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 MS ++ HV VLL + + L + +D TFG GG+SR ++ D Sbjct: 1 MSKVENYQ---HVTVLLHEAVDALAIREDGIYVDGTFGRGGHSRLILSRLGKQGRLVVFD 57 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGD 122 +DP A++ E + ++ S+ F Q + + G+D G +FDLG+SS QID G Sbjct: 58 KDPEAIAVANE-LAVQDKRVSVVHNGFETFQTALDELGIDKIDGALFDLGISSPQIDDGS 116 Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF+ PLDMRM + G+SA++ + A+ +DL ++ GEE+ + +IA AIV +R+ Sbjct: 117 RGFSFRFDAPLDMRMDPTRGMSAAEWIATASEQDLHEVIKNYGEERFSRQIARAIVAQRE 176 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 +P TT+ L+ L+ + V + + PATR+FQA+RIF+N E+EE+ L LK Sbjct: 177 ESPIDTTRKLAQLVAQNVRTRERGQ-DPATRTFQAVRIFINRELEEVEAVLPQVAGRLKE 235 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQED 299 GG L V++FHSLEDR+VK+F S R + ++ +++ K + P + Sbjct: 236 GGRLAVIAFHSLEDRIVKQFIKKYSQHAPLPRWAVVKEADLPQPPLKAV-GKAIKPGSTE 294 Query: 300 VAFNRRSRSAKLRAGMR 316 N R+RSA LR R Sbjct: 295 TETNPRARSAVLRVAER 311 >gi|219849709|ref|YP_002464142.1| S-adenosyl-methyltransferase MraW [Chloroflexus aggregans DSM 9485] gi|263445784|sp|B8G5X3|RSMH_CHLAD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|219543968|gb|ACL25706.1| S-adenosyl-methyltransferase MraW [Chloroflexus aggregans DSM 9485] Length = 301 Score = 362 bits (929), Expect = 5e-98, Method: Composition-based stats. Identities = 126/311 (40%), Positives = 180/311 (57%), Gaps = 22/311 (7%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73 HVPV++ +V+A L P PG +DAT G GG++ + + G ++ +D DP A+ Sbjct: 4 TFQHVPVMVAEVVAALAPRPGGRYIDATVGGGGHALAVLQAARPGGRLLGIDADPAALVA 63 Query: 74 GQETMRDYKEQFSLF--QATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQ 128 + + + + +F+ L + G VDG++FDLGVSS Q+D +RGFSF Sbjct: 64 TADRLAEAGLREHAVLCHGSFADLAVIAGETGFINVDGILFDLGVSSYQLDTPERGFSFA 123 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 GPLDMR+ + G +A+D+VN + ++L ++ GEE A RIA AIV+RR++ PFQ Sbjct: 124 ADGPLDMRLDPTQGPTAADLVNTLSERELADVIFQYGEEHAARRIARAIVERRRTQPFQR 183 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T DL+++I + V + RIHPATR+FQALRI VN E++ LA L A L GG L+V Sbjct: 184 TADLAAVIARVV-GGRRGRIHPATRTFQALRIAVNRELDRLAAALPQAVHLLAPGGRLVV 242 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +SFHSLEDR+VK+F + + TKK V T ++VA N R+R Sbjct: 243 ISFHSLEDRIVKQFMRAEA------------EGATPRLVINTKKPVAATDDEVATNPRAR 290 Query: 308 SAKLRAGMRTV 318 SAKLR R V Sbjct: 291 SAKLRVATRIV 301 >gi|315498857|ref|YP_004087661.1| s-adenosyl-methyltransferase mraw [Asticcacaulis excentricus CB 48] gi|315416869|gb|ADU13510.1| S-adenosyl-methyltransferase MraW [Asticcacaulis excentricus CB 48] Length = 327 Score = 362 bits (929), Expect = 5e-98, Method: Composition-based stats. Identities = 131/313 (41%), Positives = 200/313 (63%), Gaps = 5/313 (1%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQ 75 + H+ VLL +VIA + P G++++D TFGAGGY+R+F G+ VIA DRD + Sbjct: 2 SEAPHISVLLNEVIAAVAPESGRLVVDGTFGAGGYTRAFLSRGAEVIAFDRDARVQPFVE 61 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGP 132 D+ ++F FS++ + + GVD +V D+GVSSMQ+D DRGFSF + GP Sbjct: 62 AVRGDFGDRFRFVNRPFSEMAAGLAELGVDRVDAIVLDIGVSSMQLDEADRGFSFMRDGP 121 Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 LDMRM+ G+SA+D+VN+ D+ I+ + GEE ++ IA AIVKRR+ APF+ T DL+ Sbjct: 122 LDMRMAVDGLSAADIVNEWAEADIAHIIWLYGEEHRSRAIAAAIVKRRKEAPFERTLDLA 181 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++++K V + +++HPAT++FQALRI VN+E+ EL L ++E+ LK G+L VV+FHS Sbjct: 182 AVVEKAVGGRRGDKVHPATKTFQALRIAVNDELGELESALEASERLLKPEGVLAVVTFHS 241 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 LEDR+VK F A R+G+ + P ++ + + + P++ +++ N R+RSAK Sbjct: 242 LEDRMVKSFLAERAGRTPSGSRHAPQIQTGPAPTYRLDSTRAIAPSEAELSGNPRARSAK 301 Query: 311 LRAGMRTVERSIE 323 LRA RT + Sbjct: 302 LRAARRTGHPPFD 314 >gi|17230846|ref|NP_487394.1| S-adenosyl-methyltransferase MraW [Nostoc sp. PCC 7120] gi|20138995|sp|Q8YRT9|RSMH_ANASP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|17132449|dbj|BAB75053.1| all3354 [Nostoc sp. PCC 7120] Length = 302 Score = 362 bits (929), Expect = 5e-98, Method: Composition-based stats. Identities = 121/318 (38%), Positives = 175/318 (55%), Gaps = 26/318 (8%) Query: 12 AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPF 69 I I H+PVL ++VI L PG LD T G GG+SR + + + A+D+D Sbjct: 7 TIEEPIFSHLPVLPQEVITGLVVRPGGRYLDVTVGGGGHSRLILEAAPDVKLTAVDQDGD 66 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 A++ ++ + ++ EQ ++ F+ P DGV+ DLGVSS +D +RGFSF+ Sbjct: 67 ALTAAKQELAEFGEQVKFVRSNFAAYD--FPSTSFDGVLADLGVSSYHLDTPERGFSFRH 124 Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM +SA+DV+N + +L I GEE+ + RIA IV++R PF TT Sbjct: 125 QASLDMRMDQRQSLSAADVINDWDEVELANIFFKYGEERLSRRIARRIVEKR---PFHTT 181 Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L+ I +V + RIHPATR FQALRI VN+E++ L + A KAL GG + + Sbjct: 182 TELAEAIASSVPPKYRYGRIHPATRVFQALRIVVNDELKSLETFIEKAPKALVPGGRIAI 241 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +SFHSLEDRLVK + + + +TKK ++ T +++A N RSR Sbjct: 242 ISFHSLEDRLVKHGLRNS-----------------PLLKVLTKKPIIATDDEIANNPRSR 284 Query: 308 SAKLRAGMRTVERSIEDD 325 SAKLR + E ED+ Sbjct: 285 SAKLRIAEKQAETGDEDN 302 >gi|88858794|ref|ZP_01133435.1| S-adenosyl-methyltransferase [Pseudoalteromonas tunicata D2] gi|88819020|gb|EAR28834.1| S-adenosyl-methyltransferase [Pseudoalteromonas tunicata D2] Length = 312 Score = 362 bits (929), Expect = 6e-98, Method: Composition-based stats. Identities = 121/308 (39%), Positives = 185/308 (60%), Gaps = 15/308 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H+ VL+E+ I L+ P + +D TFG GG+S K + A+DRDP A+ + Sbjct: 7 HISVLMEETIDALDIKPDGIYIDGTFGRGGHSGEILKKLGENGRLQAIDRDPQAIKAA-Q 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 D +FS+ TFS+++ + VDG++ D+GVSS Q+D +RGFSF K GP Sbjct: 66 RFAD-DARFSIAHNTFSEIKLVAEEADLIGKVDGILLDIGVSSPQLDDAERGFSFMKDGP 124 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ S G SA++ + A+++++T ++ GEEK RIAH I++ R P +T L Sbjct: 125 LDMRMNPSAGRSAAEWLAVADLEEITWVIKTYGEEKFGRRIAHKILETRVHTPITSTAQL 184 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI + V K+ HPATR+FQA+RI++N+E+EE+ L ++ + LK GG L+V+SFH Sbjct: 185 AKLIDEAVPV-KDKHKHPATRAFQAIRIYINSELEEITTALSASLEVLKPGGRLVVISFH 243 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNA---HPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SLEDR+VK+F +S R + +NA ++I K + P +E++A N R+RS Sbjct: 244 SLEDRIVKQFIKKQSKGEALPRGLPLTNAQLQQKLTLKAI-GKAIKPGEEELARNSRARS 302 Query: 309 AKLRAGMR 316 + LR R Sbjct: 303 SVLRIAER 310 >gi|332991932|gb|AEF01987.1| 16S rRNA m(4)C1402 methyltranserfase [Alteromonas sp. SN2] Length = 313 Score = 362 bits (929), Expect = 6e-98, Method: Composition-based stats. Identities = 124/315 (39%), Positives = 185/315 (58%), Gaps = 17/315 (5%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFA 70 + HV VLL++ I L P + +DATFG GG+S + +IA DRDP A Sbjct: 3 QSSEFKHVSVLLDECIEALAIKPNGIYIDATFGRGGHSAHILDALGSDGTLIAFDRDPQA 62 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFS 126 + + D +F + + F + + + G +DGV+ DLGVSS Q+D +RGFS Sbjct: 63 IEAA-KRFAD-DSRFRIIHSPFGDMAEEIEALGLTGKIDGVLMDLGVSSPQLDDAERGFS 120 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 F + GPLDMRM S G SA+D + +A +D+T+++ GEEK RIAHAIV R++ P Sbjct: 121 FLRDGPLDMRMDTSRGESAADWLARAEEQDITQVIKEFGEEKFGKRIAHAIVNTRETTPI 180 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 T L++LI + V K+ HPATR+FQ +RI++N E+E+L GL++A + L G L Sbjct: 181 TRTAQLAALIDEAVPV-KDKFKHPATRAFQGIRIYINAELEQLRTGLKAATQVLAKEGRL 239 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHP----AVFQSITKKVVVPTQEDVA 301 V+SFHSLEDRLVK+F +S K +V H +P V +++++ + P++ ++A Sbjct: 240 AVISFHSLEDRLVKRFIKDQS-KGKSVPHNLPITQAEIDADKVLKALSR-AIKPSELEIA 297 Query: 302 FNRRSRSAKLRAGMR 316 N RSRS+ LR + Sbjct: 298 NNVRSRSSVLRVAEK 312 >gi|330721283|gb|EGG99370.1| rRNA small subunit methyltransferase H [gamma proteobacterium IMCC2047] Length = 312 Score = 362 bits (929), Expect = 6e-98, Method: Composition-based stats. Identities = 115/307 (37%), Positives = 173/307 (56%), Gaps = 10/307 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H VLL + + L PG +D TFG GG+SR+ ++ +D+DP A++ E Sbjct: 7 HDSVLLNEAVDALVVDPGGCYVDGTFGRGGHSRAILSRLSSKGRLLVIDKDPQAIAYAHE 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVP----DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 D E+ + A+F++L+D + GV GV+ DLGVSS Q+D +RGFSF + GP Sbjct: 67 HFGD-DERVIIGHASFAELKDLAAAHGLENGVTGVLLDLGVSSPQLDDPERGFSFTQDGP 125 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G SA++ + +A ++++ +L GEE+ A R+A AIV R PF T L Sbjct: 126 LDMRMDTSRGQSAAEWIAEAPEEEISTVLKEYGEERFARRMAKAIVAERAQRPFTRTAHL 185 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +I++ + + +PATR+FQ +RIF+N E+++LA L A L G L+V+SFH Sbjct: 186 AEVIKQANPAWEKGK-NPATRAFQGIRIFINRELDDLALVLDQAVDLLADKGRLVVISFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+VKKF + RH+ K V +++++ N R+RSA + Sbjct: 245 SLEDRIVKKFIHKQEKGEPLPRHLPIMQDQIDQRLKRVGKAVKASEQELKDNVRARSAIM 304 Query: 312 RAGMRTV 318 R RTV Sbjct: 305 RIAERTV 311 >gi|156973213|ref|YP_001444120.1| S-adenosyl-methyltransferase MraW [Vibrio harveyi ATCC BAA-1116] gi|263504515|sp|A7MWK7|RSMH_VIBHB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|156524807|gb|ABU69893.1| hypothetical protein VIBHAR_00894 [Vibrio harveyi ATCC BAA-1116] Length = 316 Score = 362 bits (929), Expect = 6e-98, Method: Composition-based stats. Identities = 118/316 (37%), Positives = 169/316 (53%), Gaps = 18/316 (5%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72 H+ VLL + I L P + +D TFG GG+SR+ + ++DRDP A++ Sbjct: 3 ETFQHISVLLNESIDGLAIKPDGIYIDGTFGRGGHSRTILSKLGENGRLYSIDRDPQAIA 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128 E + +F++ FS + Y + G VDGV+ DLGVSS Q+D +RGFSF Sbjct: 63 ---EAAKIDDPRFTIIHGPFSGMAKYAEEYGLVGKVDGVLLDLGVSSPQLDDAERGFSFM 119 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ---SAP 184 K GPLDMRM SGI S + +A++ D+T ++ GE+K A RIA AIV R+ + P Sbjct: 120 KDGPLDMRMDPTSGIPVSQWLMEADLDDITWVIREFGEDKHARRIAKAIVAYREDEENEP 179 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 T L+ LI S + HPATR+FQA RI++N+E+EE+ L+ A L G Sbjct: 180 MVRTGQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAASILAPEGR 239 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV----VPTQEDV 300 L V+SFHSLEDR+VK+F S + + S K + PT++++ Sbjct: 240 LSVISFHSLEDRMVKRFIRKESKGPEVPHGIPMTEEQIRALGSANMKPIGKANKPTKQEI 299 Query: 301 AFNRRSRSAKLRAGMR 316 N RSRS+ LR + Sbjct: 300 DMNPRSRSSVLRIAEK 315 >gi|262383993|ref|ZP_06077129.1| methylase MraW [Bacteroides sp. 2_1_33B] gi|262294891|gb|EEY82823.1| methylase MraW [Bacteroides sp. 2_1_33B] Length = 305 Score = 362 bits (929), Expect = 6e-98, Method: Composition-based stats. Identities = 107/306 (34%), Positives = 166/306 (54%), Gaps = 17/306 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 HVPV+L + + L+ P + +D TFG GG+SR K + D+D A Sbjct: 9 HVPVMLRESLEGLDIRPDGIYVDVTFGGGGHSRKILKRLGSEGELYGFDQDADAEHNV-- 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +F+ ++ F L +++ G VDG++ DLGVSS D DRGFSF+ G Sbjct: 67 ---PADPRFTFVRSNFRYLYNFMRYYGESGEVDGLLADLGVSSHHFDDKDRGFSFRFDGA 123 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ +G +A+D+VN + L + + GE K + ++A +VK R++ +T ++ Sbjct: 124 LDMRMNTRAGQTAADIVNNYTAEALADVFYLYGELKVSRKLASVLVKARETKKIETIEEF 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ K+ + FQALRI VN+E+ L + LRS + L+ GG L+V+++H Sbjct: 184 LEVIKPFT--GKDKEKKFLAQVFQALRIEVNDEMRALKEMLRSTLRVLRPGGRLVVITYH 241 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDRLVK F + + + + + P F+ + KV+VPT E+V N RSRSAKL Sbjct: 242 SLEDRLVKNFLKTGNFEGKCEQDFFGNVRSP--FRLVNNKVIVPTDEEVERNPRSRSAKL 299 Query: 312 RAGMRT 317 R + Sbjct: 300 RIAEKV 305 >gi|288929756|ref|ZP_06423599.1| S-adenosyl-methyltransferase MraW [Prevotella sp. oral taxon 317 str. F0108] gi|288328857|gb|EFC67445.1| S-adenosyl-methyltransferase MraW [Prevotella sp. oral taxon 317 str. F0108] Length = 319 Score = 361 bits (928), Expect = 6e-98, Method: Composition-based stats. Identities = 113/319 (35%), Positives = 172/319 (53%), Gaps = 17/319 (5%) Query: 11 SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRD 67 I G HVPVLL + + LN G V +D TFG GG++R + + + D+D Sbjct: 4 DNIITAQGYHVPVLLAESVEALNIVEGGVYVDVTFGGGGHTRHILSKMDGTARLFSFDQD 63 Query: 68 PFAVSCGQETMRDY------KEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQI 118 A + D E+F+ ++ F L +++ GVD G++ DLGVSS Sbjct: 64 ADAEENTRRKSPDGQQPLANDERFTFVRSNFRYLDNWMRYYGVDHVDGILADLGVSSHHF 123 Query: 119 DCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177 D +RGFSF+ PLDMRM+ + ++A+ V+N + + L + + GE +Q+ RIA AIV Sbjct: 124 DDQERGFSFRFDAPLDMRMNKNAALTAAQVLNTYDEERLADVFFLYGEIRQSRRIASAIV 183 Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 K R A QTTQ +++++ +F + + FQALRI VNNE+ L + L++A + Sbjct: 184 KARAKAAVQTTQQFAAIVEP--FFKREREKKEMAKLFQALRIEVNNEMNALKEMLQAAAQ 241 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297 L GG L V+++HSLEDR+VK F + + + + P F + KV+VPT Sbjct: 242 WLGKGGRLSVITYHSLEDRMVKNFMKTGNVEGKLSQDFFGRAQTP--FTLVNNKVIVPTD 299 Query: 298 EDVAFNRRSRSAKLRAGMR 316 ++ N RSRSAKLR + Sbjct: 300 DEQLRNPRSRSAKLRIAEK 318 >gi|15642406|ref|NP_232039.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121587636|ref|ZP_01677400.1| conserved hypothetical protein [Vibrio cholerae 2740-80] gi|153818411|ref|ZP_01971078.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] gi|153822223|ref|ZP_01974890.1| conserved hypothetical protein [Vibrio cholerae B33] gi|227082532|ref|YP_002811083.1| S-adenosyl-methyltransferase mraW [Vibrio cholerae M66-2] gi|229507529|ref|ZP_04397034.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae BX 330286] gi|229512275|ref|ZP_04401754.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae B33] gi|229519411|ref|ZP_04408854.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae RC9] gi|229607035|ref|YP_002877683.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae MJ-1236] gi|254849531|ref|ZP_05238881.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Vibrio cholerae MO10] gi|255746918|ref|ZP_05420863.1| S-adenosyl-methyltransferase MraW [Vibrio cholera CIRS 101] gi|262161539|ref|ZP_06030649.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae INDRE 91/1] gi|298500231|ref|ZP_07010036.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae MAK 757] gi|20139220|sp|Q9KPF9|RSMH_VIBCH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263504940|sp|C3LQV4|RSMH_VIBCM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|9656982|gb|AAF95552.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548146|gb|EAX58219.1| conserved hypothetical protein [Vibrio cholerae 2740-80] gi|126511044|gb|EAZ73638.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] gi|126520233|gb|EAZ77456.1| conserved hypothetical protein [Vibrio cholerae B33] gi|227010420|gb|ACP06632.1| S-adenosyl-methyltransferase mraW [Vibrio cholerae M66-2] gi|229344100|gb|EEO09075.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae RC9] gi|229352240|gb|EEO17181.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae B33] gi|229355034|gb|EEO19955.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae BX 330286] gi|229369690|gb|ACQ60113.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae MJ-1236] gi|254845236|gb|EET23650.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Vibrio cholerae MO10] gi|255735320|gb|EET90720.1| S-adenosyl-methyltransferase MraW [Vibrio cholera CIRS 101] gi|262028850|gb|EEY47504.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae INDRE 91/1] gi|297540924|gb|EFH76978.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae MAK 757] Length = 316 Score = 361 bits (928), Expect = 6e-98, Method: Composition-based stats. Identities = 120/323 (37%), Positives = 174/323 (53%), Gaps = 23/323 (7%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 M+++ H+ VLL + I L P + +D TFG GG+SR+ + ++D Sbjct: 1 MTASFQ-----HISVLLNESIEGLAIKPDGIYIDGTFGRGGHSRTILAQLGPEGRLYSID 55 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCG 121 RDP A++ Q+ +F++ FS + +Y VDGV+FDLGVSS Q+D Sbjct: 56 RDPQAIAEAQKI---DDPRFTIVHGPFSGIAEYAQRYDLVGKVDGVLFDLGVSSPQLDDA 112 Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF K GPLDMRM SG+ S + QA++ D+T ++ GE+K A RIA AIV+ R Sbjct: 113 ERGFSFMKDGPLDMRMDPTSGMPVSAWLAQADLDDITWVIREFGEDKHARRIAKAIVEYR 172 Query: 181 QSA---PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 ++ P T L+ LI S + HPATR+FQA RI++N+E+EE+ LR A Sbjct: 173 ENELNEPLTRTSQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALRGASD 232 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSIT-KKVV 293 L G L V+SFHSLEDR+VK+F S + + + T K + Sbjct: 233 ILAPQGRLSVISFHSLEDRMVKRFMRKESQGPQVPHGIPLTQDQIRALGSAKMKTVGKAL 292 Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316 P+ ++V N RSRS+ LR + Sbjct: 293 KPSDQEVELNPRSRSSVLRVAEK 315 >gi|153802806|ref|ZP_01957392.1| conserved hypothetical protein [Vibrio cholerae MZO-3] gi|254226626|ref|ZP_04920206.1| conserved hypothetical protein [Vibrio cholerae V51] gi|124121671|gb|EAY40414.1| conserved hypothetical protein [Vibrio cholerae MZO-3] gi|125620845|gb|EAZ49199.1| conserved hypothetical protein [Vibrio cholerae V51] Length = 316 Score = 361 bits (928), Expect = 6e-98, Method: Composition-based stats. Identities = 120/323 (37%), Positives = 174/323 (53%), Gaps = 23/323 (7%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 M+++ H+ VLL + I L P + +D TFG GG+SR+ + ++D Sbjct: 1 MTASFQ-----HISVLLNESIEGLAIKPDGIYIDGTFGRGGHSRTILAQLGPQGRLYSID 55 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCG 121 RDP A++ Q+ +F++ FS + +Y VDGV+FDLGVSS Q+D Sbjct: 56 RDPQAIAEAQKI---DDPRFTIIHGPFSGIAEYAQRYDLVGKVDGVLFDLGVSSPQLDDA 112 Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF K GPLDMRM SG+ S + QA++ D+T ++ GE+K A RIA AIV+ R Sbjct: 113 ERGFSFMKDGPLDMRMDPTSGMPVSAWLAQADLDDITWVIREFGEDKHARRIAKAIVEYR 172 Query: 181 QSA---PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 ++ P T L+ LI S + HPATR+FQA RI++N+E+EE+ LR A Sbjct: 173 ENELNEPLTRTSQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALRGASD 232 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSIT-KKVV 293 L G L V+SFHSLEDR+VK+F S + + + T K + Sbjct: 233 ILAPQGRLSVISFHSLEDRMVKRFMRKESQGPEVPHGLPLTQEQIRALGSAKMKTVGKAL 292 Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316 P+ ++V N RSRS+ LR + Sbjct: 293 KPSDQEVELNPRSRSSVLRVAEK 315 >gi|29348864|ref|NP_812367.1| S-adenosyl-methyltransferase MraW [Bacteroides thetaiotaomicron VPI-5482] gi|253568789|ref|ZP_04846199.1| S-adenosyl-methyltransferase mraW [Bacteroides sp. 1_1_6] gi|298387947|ref|ZP_06997496.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 1_1_14] gi|42558980|sp|Q8A251|RSMH_BACTN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|29340770|gb|AAO78561.1| S-adenosyl-methyltransferase mraW [Bacteroides thetaiotaomicron VPI-5482] gi|251840808|gb|EES68889.1| S-adenosyl-methyltransferase mraW [Bacteroides sp. 1_1_6] gi|298259354|gb|EFI02229.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 1_1_14] Length = 304 Score = 361 bits (928), Expect = 7e-98, Method: Composition-based stats. Identities = 107/304 (35%), Positives = 163/304 (53%), Gaps = 16/304 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HVPVLL++ + +N P +D TFG G+SR G ++ D+D A E Sbjct: 9 HVPVLLKESVDGMNIHPDGTYVDVTFGGAGHSREILSRLGEGGRLLGFDQDEDA-----E 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 F+ ++ F LQ+++ VD ++ DLGVSS D +RGFSF+ G L Sbjct: 64 RNIVNDPHFTFVRSNFRYLQNFLRYHDIEQVDAILADLGVSSHHFDDSERGFSFRFDGAL 123 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +G++A+D+VN + L I + GE K + ++A AIVK R +T + Sbjct: 124 DMRMNKRAGLTAADIVNTYEEERLANIFYLYGELKNSRKLASAIVKARNGQSIRTIGEFL 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ F + + FQALRI VN E+E L + L +A +ALK GG L+V+++HS Sbjct: 184 EIIKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLAAATEALKPGGRLVVITYHS 241 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK + + + A + P F+ + KV+VP + ++ N RSRSAKLR Sbjct: 242 LEDRMVKNIMKTGNVEGKAETDFFGNLQTP--FRLVNNKVIVPDEAEIERNPRSRSAKLR 299 Query: 313 AGMR 316 + Sbjct: 300 IAEK 303 >gi|298480587|ref|ZP_06998784.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. D22] gi|298273408|gb|EFI14972.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. D22] Length = 304 Score = 361 bits (928), Expect = 7e-98, Method: Composition-based stats. Identities = 107/304 (35%), Positives = 163/304 (53%), Gaps = 16/304 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HVPVLL++ + +N PG +D TFG G+SR G ++ D+D A E Sbjct: 9 HVPVLLKESVDGMNIQPGGTYVDVTFGGAGHSREILSRLGEGGRLLGFDQDEDA-----E 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 F ++ F LQ+++ VD ++ DLGVSS D +RGFSF+ G L Sbjct: 64 RNIVNDPHFIFVRSNFRYLQNFLRYHDIEQVDAILADLGVSSHHFDDSERGFSFRFDGAL 123 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +GI+A+D+VN + L + + GE K + ++A IVK R +T + Sbjct: 124 DMRMNKRAGITAADIVNTYEEERLANLFYLYGELKNSRKLASVIVKARSGQNIRTIGEFL 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ F + + FQALRI VN E+E L + L++A +ALK GG L+V+++HS Sbjct: 184 EIIKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLQAATEALKPGGRLVVITYHS 241 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK + + + A + P F+ + KV+VP + ++ N RSRSAKLR Sbjct: 242 LEDRMVKNIMKTGNVEGKAESDFFGNLQTP--FRLVNNKVIVPDEAEIERNPRSRSAKLR 299 Query: 313 AGMR 316 + Sbjct: 300 IAEK 303 >gi|254230425|ref|ZP_04923805.1| S-adenosyl-methyltransferase MraW [Vibrio sp. Ex25] gi|262395267|ref|YP_003287121.1| S-adenosyl-methyltransferase MraW [Vibrio sp. Ex25] gi|151937058|gb|EDN55936.1| S-adenosyl-methyltransferase MraW [Vibrio sp. Ex25] gi|262338861|gb|ACY52656.1| S-adenosyl-methyltransferase MraW [Vibrio sp. Ex25] Length = 316 Score = 361 bits (928), Expect = 7e-98, Method: Composition-based stats. Identities = 115/316 (36%), Positives = 168/316 (53%), Gaps = 18/316 (5%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72 H+ VLL + I L P + +D TFG GG+SR+ + ++DRDP A++ Sbjct: 3 ETFQHISVLLNESIDGLAIKPDGIYIDGTFGRGGHSRTILSKLGENGRLYSIDRDPQAIA 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + +F++ FS + +Y + VDGV+ DLGVSS Q+D +RGFSF Sbjct: 63 EAGKI---NDPRFTIIHGPFSGIAEYAEEYDLVGKVDGVLLDLGVSSPQLDDAERGFSFM 119 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ---SAP 184 K GPLDMRM SGI S + +A++ D+T ++ GE+K A RIA AIV R+ + P Sbjct: 120 KDGPLDMRMDPTSGIPVSQWLMEADLDDITWVIREFGEDKHARRIAKAIVAYREDEENEP 179 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 T L+ LI S + HPATR+FQA RI++N+E+EE+ L+ A L G Sbjct: 180 LVRTGQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAASILAPEGR 239 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK----KVVVPTQEDV 300 L V+SFHSLEDR+VK+F S + + S K + P+++++ Sbjct: 240 LSVISFHSLEDRMVKRFIRKESKGPEVPHGIPMTEEQIRALGSANMKAVSKAIKPSKQEI 299 Query: 301 AFNRRSRSAKLRAGMR 316 N RSRS+ LR + Sbjct: 300 EMNPRSRSSVLRIAEK 315 >gi|146310292|ref|YP_001175366.1| S-adenosyl-methyltransferase MraW [Enterobacter sp. 638] gi|263447009|sp|A4W6I5|RSMH_ENT38 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|145317168|gb|ABP59315.1| S-adenosyl-methyltransferase MraW [Enterobacter sp. 638] Length = 313 Score = 361 bits (928), Expect = 7e-98, Method: Composition-based stats. Identities = 115/312 (36%), Positives = 175/312 (56%), Gaps = 19/312 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ + Sbjct: 6 KHTSVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGAEGRLLAIDRDPQAIAVAK 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +FS FS L DYV ++ +DG++ DLGVSS Q+D +RGFSF + G Sbjct: 66 TI---DDPRFSFVHGPFSALADYVSERDLTGKIDGILLDLGVSSPQLDDAERGFSFMRDG 122 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + G SA++ + A D+ ++ GEE+ RIA IV+R + P T++ Sbjct: 123 PLDMRMDPTRGQSAAEWLLTAEEADIAWVIKTFGEERFGKRIARGIVERNRIEPMTRTKE 182 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ L+S+ L GG L ++SF Sbjct: 183 LAEVVTAATPV-KDKFKHPATRTFQAVRIWVNSELEEIELALKSSLGVLAPGGRLSIISF 241 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305 HSLEDR+VK+F +S + + + + K ++P +E+VA N R Sbjct: 242 HSLEDRIVKRFMREQSRGPQVPAGLPMTEDQLRKLGGRYLRVLGK--MMPGEEEVAENPR 299 Query: 306 SRSAKLRAGMRT 317 +RS+ LR RT Sbjct: 300 ARSSVLRIAERT 311 >gi|260893420|ref|YP_003239517.1| S-adenosyl-methyltransferase MraW [Ammonifex degensii KC4] gi|260865561|gb|ACX52667.1| S-adenosyl-methyltransferase MraW [Ammonifex degensii KC4] Length = 291 Score = 361 bits (928), Expect = 7e-98, Method: Composition-based stats. Identities = 115/309 (37%), Positives = 173/309 (55%), Gaps = 26/309 (8%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMRD 80 ++++V+A L PG V +D T G GG++ + +I LDRDP A+S ++ + + Sbjct: 1 MVKEVLAYLAVKPGGVYVDCTVGGGGHAAAILAFIGDEGRLIGLDRDPEALSFARKRLGN 60 Query: 81 YKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 + L A+F+ L + + +GVDGV++DLGVSS Q+D +RGF++++ PLDMR Sbjct: 61 -DPRVHLVHASFADLAEVLAGLGVRGVDGVLYDLGVSSYQLDRPERGFTYREDAPLDMRF 119 Query: 138 SCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 S +A+D+VN+ K+L I+ GEE+ A RIA IV+ R P TT L +I+ Sbjct: 120 DPSSPVTAADLVNRLEEKELACIIREFGEERWAKRIARFIVRARARRPILTTGQLVEIIK 179 Query: 197 KTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + + ++ HPA R+FQALRI VN E+E L L A LK GG L+V+S+HSLED Sbjct: 180 EAIPASARRRGPHPARRTFQALRIAVNRELEALKASLPQAADCLKPGGRLVVLSYHSLED 239 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 RLVK FF + + +TKK + P+ E+V N R+ S KLRA Sbjct: 240 RLVKGFFRQYTC-----------------LRPLTKKPLTPSPEEVKQNPRASSCKLRAAE 282 Query: 316 RTVERSIED 324 + + + Sbjct: 283 KILNPEGGE 291 >gi|224536607|ref|ZP_03677146.1| hypothetical protein BACCELL_01482 [Bacteroides cellulosilyticus DSM 14838] gi|224521698|gb|EEF90803.1| hypothetical protein BACCELL_01482 [Bacteroides cellulosilyticus DSM 14838] Length = 306 Score = 361 bits (928), Expect = 7e-98, Method: Composition-based stats. Identities = 103/315 (32%), Positives = 163/315 (51%), Gaps = 16/315 (5%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69 ++ + HVPVLL+ + +N P +D TFG GG+SR G ++ D+D Sbjct: 1 MNEELTYHVPVLLKPSVDGMNIRPDGTYVDVTFGGGGHSREILSRLGDGGRLLGFDQDED 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFS 126 A + F ++ F L +++ VD ++ DLGVSS D +RGFS Sbjct: 61 AEQNIVDN-----PHFIFVRSNFRYLHNFLRYHDIEEVDAILADLGVSSHHFDDSERGFS 115 Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 F+ G LDMRM+ +G +A+D++N + + L I + GE K + ++A +VK R Sbjct: 116 FRFDGALDMRMNKRAGDTAADIINTYDEERLADIFYLYGELKNSRKLASVLVKARAGQKI 175 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 T + +I+ F + + FQALRI VN E+E L + L +A +ALK GG L Sbjct: 176 TTIGEFLEIIKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLYAATEALKPGGRL 233 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 +V+++HSLEDR+VK + + + + + P F+ + KV+VP + ++ N R Sbjct: 234 VVITYHSLEDRMVKNMMKTGNVEGKMEKDFFGNVQTP--FRLVNNKVIVPDEAEIERNPR 291 Query: 306 SRSAKLRAGMRTVER 320 SRSAKLR + E Sbjct: 292 SRSAKLRIAEKKGEE 306 >gi|227486691|ref|ZP_03917007.1| S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Anaerococcus lactolyticus ATCC 51172] gi|227235279|gb|EEI85294.1| S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Anaerococcus lactolyticus ATCC 51172] Length = 309 Score = 361 bits (928), Expect = 7e-98, Method: Composition-based stats. Identities = 106/313 (33%), Positives = 165/313 (52%), Gaps = 12/313 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPF 69 +++ +H PVL + I LN P + D T G GG+S+ + S +I +D+D Sbjct: 1 MNNMKFEHTPVLYRECIENLNIKPDGIYADLTLGKGGHSKLILEKLSAKGLLIGIDQDKA 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFS 126 A+ E ++DY + F F + + + G +DG + D+GVSS QID +RGFS Sbjct: 61 AIEAASENLKDYDNKV-FFNTNFENIGKVLTEAGFNKIDGALMDIGVSSYQIDNPERGFS 119 Query: 127 FQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 + GPLDMRM+ + ++A +VN+ + +LTRI GEE+ + IA IVK R + Sbjct: 120 YIHDGPLDMRMNRQNELTAEKIVNECSQDELTRIFFDYGEERFSKAIAKNIVKARANERI 179 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT L +++ K+ F +HP R FQALRI VN E++ L + + + + G L Sbjct: 180 NTTFKLRNIVMKSARF---TEVHPEKRVFQALRIEVNRELDVLTKAIDTIIDFIDKDGRL 236 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 +++FHSLEDR+VK F + + + H A + ITKK + +++ N Sbjct: 237 AIITFHSLEDRIVKNKFKDLATGCICPPEIPVCVCNHVAKVKIITKKPITAKADELRENS 296 Query: 305 RSRSAKLRAGMRT 317 RS+ AKLR R Sbjct: 297 RSKPAKLRVCQRI 309 >gi|258625131|ref|ZP_05720048.1| S-adenosyl-methyltransferase mraW [Vibrio mimicus VM603] gi|262166452|ref|ZP_06034189.1| S-adenosyl-methyltransferase MraW [Vibrio mimicus VM223] gi|262170644|ref|ZP_06038322.1| S-adenosyl-methyltransferase MraW [Vibrio mimicus MB-451] gi|258582582|gb|EEW07414.1| S-adenosyl-methyltransferase mraW [Vibrio mimicus VM603] gi|261891720|gb|EEY37706.1| S-adenosyl-methyltransferase MraW [Vibrio mimicus MB-451] gi|262026168|gb|EEY44836.1| S-adenosyl-methyltransferase MraW [Vibrio mimicus VM223] Length = 316 Score = 361 bits (928), Expect = 7e-98, Method: Composition-based stats. Identities = 120/323 (37%), Positives = 174/323 (53%), Gaps = 23/323 (7%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 M+++ H+ VLL + I L P + +D TFG GG+SR+ + ++D Sbjct: 1 MTASFQ-----HISVLLNESIEGLAIKPDGIYIDGTFGRGGHSRTILAQLGPQGRLYSID 55 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCG 121 RDP A++ Q+ +F++ FS + +Y VDGV+FDLGVSS Q+D Sbjct: 56 RDPQAIAEAQKI---DDPRFTIIHGPFSGIAEYAQRYDLVGKVDGVLFDLGVSSPQLDDA 112 Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF K GPLDMRM SG+ S + QA++ D+T ++ GE+K A RIA AIV+ R Sbjct: 113 ERGFSFMKDGPLDMRMDPTSGMPVSAWLAQADLDDITWVIREFGEDKHARRIAKAIVEYR 172 Query: 181 QSA---PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 ++ P T L+ LI S + HPATR+FQA RI++N+E+EE+ LR A Sbjct: 173 ENELNEPLTRTSQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALRGASD 232 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSIT-KKVV 293 L G L V+SFHSLEDR+VK+F S + + + T K + Sbjct: 233 ILAPQGRLSVISFHSLEDRMVKRFMRKESQGPEVPHGIPLTQDQIRALGSAKMKTVGKAL 292 Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316 P+ ++V N RSRS+ LR + Sbjct: 293 KPSDQEVELNPRSRSSVLRVAEK 315 >gi|298377152|ref|ZP_06987106.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 3_1_19] gi|298266136|gb|EFI07795.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 3_1_19] Length = 305 Score = 361 bits (928), Expect = 7e-98, Method: Composition-based stats. Identities = 107/306 (34%), Positives = 164/306 (53%), Gaps = 17/306 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 HVPV+L + + L+ P + +D TFG GG+S K + D+D A Sbjct: 9 HVPVMLRESLEGLDIRPDGIYVDVTFGGGGHSCEILKRLGSEGELYGFDQDADAEHNI-- 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +F+ ++ F L +++ G VDG++ DLGVSS D DRGFSF+ G Sbjct: 67 ---PADPRFTFVRSNFRYLYNFMRYYGESGEVDGLLADLGVSSHHFDDKDRGFSFRFDGA 123 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ +G +A+D+VN + L + + GE K + ++A +VK R++ +T D Sbjct: 124 LDMRMNTRAGQTAADIVNNYTAEALADVFYLYGELKVSRKLASVLVKARETKKIETIGDF 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ K+ + FQALRI VN+E+ L + LRS + L+ GG L+V+++H Sbjct: 184 LEVIKPFT--GKDKEKKFLAQVFQALRIEVNDEMRALKEMLRSTLRVLRPGGRLVVITYH 241 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDRLVK F + + + + + P F+ + KV+VPT E+V N RSRSAKL Sbjct: 242 SLEDRLVKNFLKTGNFEGKCEQDFFGNVRSP--FRLVNNKVIVPTDEEVERNPRSRSAKL 299 Query: 312 RAGMRT 317 R + Sbjct: 300 RIAEKV 305 >gi|294792047|ref|ZP_06757195.1| S-adenosyl-methyltransferase MraW [Veillonella sp. 6_1_27] gi|294457277|gb|EFG25639.1| S-adenosyl-methyltransferase MraW [Veillonella sp. 6_1_27] Length = 311 Score = 361 bits (928), Expect = 7e-98, Method: Composition-based stats. Identities = 106/307 (34%), Positives = 164/307 (53%), Gaps = 10/307 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS---FCKMGSNVIALDRDPFAVSCGQ 75 +H VLL + + + P + +D T G G++ + +I LD+D A+S + Sbjct: 5 NHTSVLLRETVDSVVTNPKGIYVDCTLGGAGHAHAVGEILDPEGMIIGLDQDEDALSVAR 64 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + D K Q FS L+D + + G VDG +FDLGVSS Q+D +RGFS+ GP Sbjct: 65 QRLSDLKCQVLTIPTNFSNLKDALQNAGIYEVDGFIFDLGVSSYQLDTPERGFSYMNDGP 124 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM ++A ++VN+ + + L +I+ GEE+ A RI IV+ RQ TT +L Sbjct: 125 LDMRMDKDAPLTAEEIVNEYDSEQLLQIIRDYGEERWAKRIVEFIVEARQEKRITTTGEL 184 Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+ + + + HPA R+FQA+RI VN E+ L A LK G + V++F Sbjct: 185 VRIIKNAIPAKARQDGPHPAKRTFQAIRIEVNRELAILHDSFVDAVSMLKPKGKIGVITF 244 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+ K+ F S + + H AV ++ K + P+ ++ N R+RSA Sbjct: 245 HSLEDRITKQTFKELSTACICPPQLPVCVCNHKAVVKAKN-KAIEPSIGEIEVNPRARSA 303 Query: 310 KLRAGMR 316 KLR ++ Sbjct: 304 KLRVAVK 310 >gi|197285925|ref|YP_002151797.1| S-adenosyl-methyltransferase [Proteus mirabilis HI4320] gi|227356432|ref|ZP_03840820.1| S-adenosyl-methyltransferase [Proteus mirabilis ATCC 29906] gi|262824977|sp|B4F119|RSMH_PROMH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|194683412|emb|CAR44158.1| S-adenosyl-methyltransferase [Proteus mirabilis HI4320] gi|227163542|gb|EEI48463.1| S-adenosyl-methyltransferase [Proteus mirabilis ATCC 29906] Length = 315 Score = 361 bits (928), Expect = 8e-98, Method: Composition-based stats. Identities = 124/314 (39%), Positives = 175/314 (55%), Gaps = 20/314 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H VLL++ + LN P + +D TFG GG+SR +IA+DRDP A++ E Sbjct: 8 HTSVLLDEAVNGLNIKPSGIYIDGTFGRGGHSRLILSQLGEQGRLIAIDRDPQAIAVANE 67 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +FS+ FS ++ Y+ + G VDGV+ DLGVSS Q+D +RGFSF + GP Sbjct: 68 I---DDPRFSIIHGPFSNIEHYINELGLSGKVDGVLLDLGVSSPQLDDPERGFSFMRDGP 124 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ-SAPFQTTQD 190 LDMRM + G SA+ + A D+T +L GEE+ A RIA AIV R + P T+ Sbjct: 125 LDMRMDPTTGQSAAQWLMNAEEDDITWVLKTFGEERFAKRIARAIVARNKTEEPLTRTKQ 184 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ LI + + ++ HPATRSFQA+RI++N+E++E+ + L+ A L G L V+SF Sbjct: 185 LADLISEASPVKERHK-HPATRSFQAIRIYINSELDEIEKALKGAVSILAPAGRLSVISF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNRR 305 HSLEDRLVK+F S + + + A SI K + PT +V N R Sbjct: 244 HSLEDRLVKRFIRDESKGPVVPAGIPLTEEQIKALGSARLSSIHK--MKPTGVEVEENPR 301 Query: 306 SRSAKLRAGMRTVE 319 +RS+ LR R E Sbjct: 302 ARSSVLRVAQRIEE 315 >gi|317474530|ref|ZP_07933804.1| MraW methylase [Bacteroides eggerthii 1_2_48FAA] gi|316909211|gb|EFV30891.1| MraW methylase [Bacteroides eggerthii 1_2_48FAA] Length = 305 Score = 361 bits (928), Expect = 8e-98, Method: Composition-based stats. Identities = 106/313 (33%), Positives = 161/313 (51%), Gaps = 16/313 (5%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69 + H+PVLL + +N P +D TFG GG+SR G ++ D+D Sbjct: 1 MKEETTYHIPVLLMPSVDGMNIRPDGTYVDMTFGGGGHSREILSRLGEGGRLLGFDQDED 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFS 126 A F+ ++ F L +++ G VD ++ DLGVSS D +RGFS Sbjct: 61 AEQNIVN-----DPHFTFVRSNFRYLHNFLRYHGIEQVDAILADLGVSSHHFDDSERGFS 115 Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 F+ G LDMRM+ +G +A+D+VN + L I + GE K + ++A IVK R + Sbjct: 116 FRFDGMLDMRMNKRAGCTAADIVNTYEEERLADIFYLYGELKNSRKLASVIVKARATRQI 175 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 T D +I+ F + + FQALRI VN E+E L + L +A +ALK GG L Sbjct: 176 STIGDFLDIIKPL--FGREREKKELAKVFQALRIEVNREMEALKEMLYAATEALKPGGRL 233 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 +V+++HSLEDR+VK + + + A + + P F+ + KV+VP + ++ N R Sbjct: 234 VVITYHSLEDRMVKNIMKTGNIEGKAEKDFFGNVQTP--FRLVNNKVIVPDETEIERNPR 291 Query: 306 SRSAKLRAGMRTV 318 SRSAKLR + Sbjct: 292 SRSAKLRIAEKIE 304 >gi|121728362|ref|ZP_01681391.1| conserved hypothetical protein [Vibrio cholerae V52] gi|147675217|ref|YP_001217911.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae O395] gi|153214084|ref|ZP_01949218.1| conserved hypothetical protein [Vibrio cholerae 1587] gi|153826882|ref|ZP_01979549.1| conserved hypothetical protein [Vibrio cholerae MZO-2] gi|153830362|ref|ZP_01983029.1| conserved hypothetical protein [Vibrio cholerae 623-39] gi|229521240|ref|ZP_04410660.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae TM 11079-80] gi|229524395|ref|ZP_04413800.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae bv. albensis VL426] gi|229528604|ref|ZP_04417994.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae 12129(1)] gi|262168390|ref|ZP_06036087.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae RC27] gi|262190392|ref|ZP_06048652.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae CT 5369-93] gi|297581036|ref|ZP_06942961.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae RC385] gi|121629353|gb|EAX61784.1| conserved hypothetical protein [Vibrio cholerae V52] gi|124115510|gb|EAY34330.1| conserved hypothetical protein [Vibrio cholerae 1587] gi|146317100|gb|ABQ21639.1| conserved hypothetical protein [Vibrio cholerae O395] gi|148874169|gb|EDL72304.1| conserved hypothetical protein [Vibrio cholerae 623-39] gi|149739298|gb|EDM53554.1| conserved hypothetical protein [Vibrio cholerae MZO-2] gi|227014303|gb|ACP10513.1| S-adenosyl-methyltransferase mraW [Vibrio cholerae O395] gi|229332378|gb|EEN97864.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae 12129(1)] gi|229337976|gb|EEO02993.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae bv. albensis VL426] gi|229341772|gb|EEO06774.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae TM 11079-80] gi|262023282|gb|EEY41986.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae RC27] gi|262033732|gb|EEY52212.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae CT 5369-93] gi|297534862|gb|EFH73698.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae RC385] Length = 316 Score = 361 bits (928), Expect = 8e-98, Method: Composition-based stats. Identities = 120/323 (37%), Positives = 174/323 (53%), Gaps = 23/323 (7%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 M+++ H+ VLL + I L P + +D TFG GG+SR+ + ++D Sbjct: 1 MTASFQ-----HISVLLNESIEGLAIKPDGIYIDGTFGRGGHSRTILAQLGPEGRLYSID 55 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCG 121 RDP A++ Q+ +F++ FS + +Y VDGV+FDLGVSS Q+D Sbjct: 56 RDPQAIAEAQKI---DDPRFTIVHGPFSGIAEYAQRYDLVGKVDGVLFDLGVSSPQLDDA 112 Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF K GPLDMRM SG+ S + QA++ D+T ++ GE+K A RIA AIV+ R Sbjct: 113 ERGFSFMKDGPLDMRMDPTSGMPVSAWLAQADLDDITWVIREFGEDKHARRIAKAIVEYR 172 Query: 181 QSA---PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 ++ P T L+ LI S + HPATR+FQA RI++N+E+EE+ LR A Sbjct: 173 ENELNEPLTRTSQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALRGASD 232 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSIT-KKVV 293 L G L V+SFHSLEDR+VK+F S + + + T K + Sbjct: 233 ILAPQGRLSVISFHSLEDRMVKRFMRKESQGPEVPHGLPLTQEQIRALGSAKMKTVGKAL 292 Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316 P+ ++V N RSRS+ LR + Sbjct: 293 KPSDQEVELNPRSRSSVLRVAEK 315 >gi|52425730|ref|YP_088867.1| S-adenosyl-methyltransferase MraW [Mannheimia succiniciproducens MBEL55E] gi|115311583|sp|Q65RX8|RSMH_MANSM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|52307782|gb|AAU38282.1| unknown [Mannheimia succiniciproducens MBEL55E] Length = 322 Score = 361 bits (928), Expect = 8e-98, Method: Composition-based stats. Identities = 124/325 (38%), Positives = 172/325 (52%), Gaps = 20/325 (6%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 MS + +H+ VLL + + L + +D TFG GG+SR +IA+D Sbjct: 1 MSEQNTFSSPEHITVLLHEAVDGLALKDKGIYIDGTFGRGGHSRLILSKLTENGRLIAID 60 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCG 121 RDP A++ +E +F + +FS + G +DG++ DLGVSS Q+D Sbjct: 61 RDPRAIAAAEEI---QDSRFHIEHNSFSAIPYICEKLGLVGKIDGILLDLGVSSPQLDDA 117 Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF K GPLDMRM S G+SA+ + Q +DL +L GEE+ A RIAHAIV Sbjct: 118 ERGFSFMKDGPLDMRMDTSKGLSAAQWLQQVTEEDLAWVLKTFGEERFAKRIAHAIVNYN 177 Query: 181 Q------SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234 + + P T L+ LI + V F K+ HPATRSFQA+RIF+N+E++EL L S Sbjct: 178 KSAVQNGTEPLTRTLPLAELIAQAVPF-KDKHKHPATRSFQAIRIFINSELDELESVLHS 236 Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ--SITKKV 292 A L G L V+SFHSLEDR+VK F +S + + + + K Sbjct: 237 ALTVLAPEGRLSVISFHSLEDRMVKHFMRKQSKGESIPKGLPLREDQINRNRTLKVIGKA 296 Query: 293 VVPTQEDVAFNRRSRSAKLRAGMRT 317 + P + +V N RSRSA LR R Sbjct: 297 IQPKESEVFANPRSRSAVLRVAERI 321 >gi|46580916|ref|YP_011724.1| S-adenosyl-methyltransferase MraW [Desulfovibrio vulgaris str. Hildenborough] gi|120601783|ref|YP_966183.1| S-adenosyl-methyltransferase MraW [Desulfovibrio vulgaris DP4] gi|50402222|sp|P62470|RSMH_DESVH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446337|sp|A1VBE0|RSMH_DESVV RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|46450336|gb|AAS96984.1| S-adenosyl-methyltransferase MraW [Desulfovibrio vulgaris str. Hildenborough] gi|120562012|gb|ABM27756.1| S-adenosyl-methyltransferase MraW [Desulfovibrio vulgaris DP4] gi|311234607|gb|ADP87461.1| S-adenosyl-methyltransferase MraW [Desulfovibrio vulgaris RCH1] Length = 323 Score = 361 bits (928), Expect = 8e-98, Method: Composition-based stats. Identities = 120/321 (37%), Positives = 173/321 (53%), Gaps = 13/321 (4%) Query: 7 KTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIA 63 + M++ H+PVLLE+V+ L P G LD T G G++ + + G+ + Sbjct: 6 ENMTAP---EWAAHIPVLLEEVLEYLAPRKGGRYLDGTLGLAGHASAVLERAGEGTELCG 62 Query: 64 LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDC 120 LDRDP A+ + + Q L+ +S+ ++ + D G VDG + D+GVSSMQID Sbjct: 63 LDRDPEALRRATARLAPFAGQTHLYHLRYSEFEEALDDLGWPTVDGALIDIGVSSMQIDL 122 Query: 121 GDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFSF GPLDMRM SA +VN+ + L I+ GEE A RIA AIV Sbjct: 123 AERGFSFHADGPLDMRMDPDAHESAWRLVNRERHEVLRDIIARYGEEPMAGRIARAIVDA 182 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSKNN--RIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 R + TT L++++++ R HPATR+FQALR+ VN+E+ EL + L + Sbjct: 183 RNTGSIDTTLQLAAIVERAYPAKWRATARNHPATRTFQALRMAVNDELGELERFLDAILA 242 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPT 296 L GG L+V+SFHSLEDR+VK + RH+ H + +TK+ V T Sbjct: 243 RLAPGGRLVVISFHSLEDRIVKHRMRHWAEGCRCPRHVPRCVCGHSPEVRILTKRPVTAT 302 Query: 297 QEDVAFNRRSRSAKLRAGMRT 317 ++A N R+ SAKLRA + Sbjct: 303 DGELARNPRASSAKLRAAEKV 323 >gi|282878018|ref|ZP_06286826.1| S-adenosyl-methyltransferase MraW [Prevotella buccalis ATCC 35310] gi|281299853|gb|EFA92214.1| S-adenosyl-methyltransferase MraW [Prevotella buccalis ATCC 35310] Length = 312 Score = 361 bits (927), Expect = 8e-98, Method: Composition-based stats. Identities = 112/319 (35%), Positives = 168/319 (52%), Gaps = 19/319 (5%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 MS T HVPVLL++ + LN P + +D TFG GG+S + ++ + D Sbjct: 1 MSIKTAETY--HVPVLLQESVEGLNIQPDGIYVDVTFGGGGHSMQILRQLGENGHLFSFD 58 Query: 66 RDPFAVS----CGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQI 118 +D A G E ++ + F+ ++ F L++++ +DG++ DLGVSS Sbjct: 59 QDLDAEKNIPQAGNELLQQ--DNFTFVRSNFRYLKNWMRYYEIEQIDGLLADLGVSSHHF 116 Query: 119 DCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177 D RGFSF+ PLDMRM+ + I+A+DVVN + + L + + GE K A RIA +V Sbjct: 117 DDESRGFSFRFDAPLDMRMNKTASITAADVVNTYSEERLADVFYLYGELKNARRIASLLV 176 Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 K R TTQD + F + + FQALRI VN+E+E L + L A++ Sbjct: 177 KARTEEMIVTTQDF--IQATAPLFKREREKKDMAKLFQALRIEVNHEMESLKEMLEGAKQ 234 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297 L+ GG L V+++HSLEDR+VK + + + + P F I KKV+VP + Sbjct: 235 LLRPGGRLSVITYHSLEDRIVKNMMKTGNVEGKMTQDFFGKITTP--FSLINKKVIVPAE 292 Query: 298 EDVAFNRRSRSAKLRAGMR 316 ++ N RSRSAKLR + Sbjct: 293 DEQQRNPRSRSAKLRIAEK 311 >gi|162447417|ref|YP_001620549.1| S-adenosylmethionine-dependent methyltransferase [Acholeplasma laidlawii PG-8A] gi|263433262|sp|A9NFP3|RSMH1_ACHLI RecName: Full=Ribosomal RNA small subunit methyltransferase H 1; AltName: Full=16S rRNA m(4)C1402 methyltransferase 1; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH 1 gi|161985524|gb|ABX81173.1| S-adenosylmethionine-dependent methyltransferase [Acholeplasma laidlawii PG-8A] Length = 299 Score = 361 bits (927), Expect = 9e-98, Method: Composition-based stats. Identities = 114/304 (37%), Positives = 171/304 (56%), Gaps = 14/304 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76 H+ VLL + I LN P + +DAT G GG+S K ++ A D+D +A+ E Sbjct: 2 KHISVLLNESIEGLNIKPNGIYVDATLGGGGHSLEILKKLDKGHLYAFDQDAYAIGRATE 61 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++D+ + + Q+ FS +++ + + G VDG++FDLG+SS QID RGFS+ K L Sbjct: 62 RLKDFSNK-TFIQSNFSFIKEKLNELGIYQVDGIIFDLGLSSFQIDDETRGFSYLKDYDL 120 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ ++A ++VN + L I G+E+ A +IA IV RR P TT +L Sbjct: 121 DMRMNKDATLTAKEIVNTYERQKLADIFRAYGDEENAWKIAGMIVDRR---PLNTTLELV 177 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 + T +K + H A R FQALRI VN E+E L + L SA + L GG L +++F S Sbjct: 178 EI---TDIANKGMKGHSAKRVFQALRIEVNKELEVLERALNSALELLNIGGRLSIITFQS 234 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LED++VK F+ + S I + P + IT+K V+P++ ++ N RSRSAKLR Sbjct: 235 LEDKMVKSFYKTHSQMDYPKNIDIRTFPKPP-LKIITRKPVLPSEIELEHNSRSRSAKLR 293 Query: 313 AGMR 316 + Sbjct: 294 IAEK 297 >gi|312112902|ref|YP_004010498.1| S-adenosyl-methyltransferase MraW [Rhodomicrobium vannielii ATCC 17100] gi|311218031|gb|ADP69399.1| S-adenosyl-methyltransferase MraW [Rhodomicrobium vannielii ATCC 17100] Length = 340 Score = 361 bits (927), Expect = 9e-98, Method: Composition-based stats. Identities = 141/310 (45%), Positives = 199/310 (64%), Gaps = 6/310 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETM 78 H+PVLL +V+ L+P G+ +D TFGAGGY+R+ + +V+ LDRDP A++ Sbjct: 31 HIPVLLREVLEALHPGVGERFIDGTFGAGGYARAILEAAHCDVLGLDRDPTAIAGACALE 90 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + + L + FS+++D G +DGVV DLGVSSMQ+D +RGFSF + GPLDM Sbjct: 91 TAFAGRLKLAETPFSEMEDAAHGIGWDALDGVVLDLGVSSMQLDEAERGFSFMRDGPLDM 150 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RMS SG+SA+DVVN + IL GEE+++ IA AIVK R++APF+ T L++LI Sbjct: 151 RMSSSGLSAADVVNTYEKDAIADILYTFGEERRSRAIAAAIVKDRETAPFERTGQLAALI 210 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + + + HPATRSFQALR++VN+E+ EL + L +AE+ LK GG L+VVSFHSLED Sbjct: 211 ARVLGHKPGDPKHPATRSFQALRLYVNDELGELTRALEAAERLLKPGGRLVVVSFHSLED 270 Query: 256 RLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 R+VK+F A RSGK IP ++ F+ + V P +++VA N R+RSA+LR Sbjct: 271 RIVKRFLAERSGKRAKASRYIPDAGDSTAPTFELRDRHGVEPGEDEVAANPRARSARLRW 330 Query: 314 GMRTVERSIE 323 +RT + Sbjct: 331 AVRTDAPPLA 340 >gi|189461555|ref|ZP_03010340.1| hypothetical protein BACCOP_02214 [Bacteroides coprocola DSM 17136] gi|189431761|gb|EDV00746.1| hypothetical protein BACCOP_02214 [Bacteroides coprocola DSM 17136] Length = 306 Score = 361 bits (927), Expect = 9e-98, Method: Composition-based stats. Identities = 105/304 (34%), Positives = 167/304 (54%), Gaps = 16/304 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H+PVLL + I +N P + D TFG GG+S+ + S++ + D+D A + Sbjct: 11 HIPVLLNESIDGMNLHPAGIYADMTFGGGGHSKEILRRMDKNSHLYSFDQDEDAEKNIVD 70 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +F+ ++ F L +++ GV D ++ DLGVSS D +RGFSF+ G L Sbjct: 71 -----DSRFTFVRSNFRYLHNFLRYYGVEEADAILADLGVSSHHFDDSERGFSFRFDGKL 125 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +G++A+D+VN + L + + GE K + ++A +VK R T D Sbjct: 126 DMRMNKRAGMTAADIVNNYEEERLANVFYLYGELKNSRKLASVLVKARAQKQIVTIGDFL 185 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ F K + FQALRI VN E+E L + L +A +ALK GG L+++++HS Sbjct: 186 EIIKPL--FGKEREKKELAKVFQALRIEVNQEMEALKEMLYAATEALKPGGRLVIITYHS 243 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK + + + + + P F+++ KV+VP+ E++A N RSRSAKLR Sbjct: 244 LEDRIVKNLIKTGNVEGKVEQDFFGNVQTP--FRAVNNKVIVPSDEEIARNPRSRSAKLR 301 Query: 313 AGMR 316 + Sbjct: 302 IAEK 305 >gi|114564962|ref|YP_752476.1| S-adenosyl-methyltransferase MraW [Shewanella frigidimarina NCIMB 400] gi|122298407|sp|Q07WH7|RSMH_SHEFN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|114336255|gb|ABI73637.1| S-adenosyl-methyltransferase MraW [Shewanella frigidimarina NCIMB 400] Length = 313 Score = 361 bits (927), Expect = 9e-98, Method: Composition-based stats. Identities = 114/307 (37%), Positives = 171/307 (55%), Gaps = 13/307 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H+ VLL + + LN + +D TFG GG+SR +IA+DRDP A+ ++ Sbjct: 7 HLSVLLNETVDGLNIQSDGIYIDGTFGRGGHSRHVLSHLGENGRLIAIDRDPQAIEAAKQ 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 D +F + F QL +YV + G ++GV+ DLGVSS Q+D +RGFSF + GP Sbjct: 67 FADD--PRFQIVHGGFGQLAEYVEELGLTGKINGVLLDLGVSSPQLDDAERGFSFLRDGP 124 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G +A+ + +A ++D+ + GEEK + IA I R+ PF T+DL Sbjct: 125 LDMRMDNSQGQTAAQWIARAEIEDMAWVFKTYGEEKNSRHIARCIAADREKTPFLRTKDL 184 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI + + N+ HPATR FQA+RI++N+E+E++ Q L A L G L V+SFH Sbjct: 185 ADLIARITKNKERNK-HPATRVFQAIRIYINSELEQIDQALEGALAVLAPQGRLSVISFH 243 Query: 252 SLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK+F S V ++ + + + K + P+ ++ N R+RS+ Sbjct: 244 SLEDRMVKRFIRRHSQGESVPHGLPIMEAELNKSRKLKAVSKALKPSDAELELNPRARSS 303 Query: 310 KLRAGMR 316 LR R Sbjct: 304 VLRVAER 310 >gi|294142812|ref|YP_003558790.1| S-adenosyl-methyltransferase MraW [Shewanella violacea DSS12] gi|20139165|sp|Q9F1N8|RSMH_SHEVD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|11761327|dbj|BAB19194.1| MraW [Shewanella violacea] gi|293329281|dbj|BAJ04012.1| S-adenosyl-methyltransferase MraW [Shewanella violacea DSS12] Length = 313 Score = 361 bits (927), Expect = 9e-98, Method: Composition-based stats. Identities = 123/307 (40%), Positives = 173/307 (56%), Gaps = 13/307 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H+ VLL + +A LN P + +D TFG GG+SR K +IA+DRDP A+ ++ Sbjct: 7 HLSVLLTETVAGLNIKPDGIYIDGTFGRGGHSREVLKHLGDNGRLIAIDRDPQAIIAAEQ 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 D +FS+ F QL DYV D G VDGV+ D GVSS Q+D +RGFSF + GP Sbjct: 67 FADDA--RFSIVHGGFGQLADYVEDLGLKGKVDGVLLDFGVSSPQLDDAERGFSFLRDGP 124 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G +A++ + + ++D+ + GEEK + IA I R PF T++L Sbjct: 125 LDMRMDNSQGQTAAEWIARTEIEDMAWVFKTYGEEKNSRHIARCIAADRDKTPFLRTKEL 184 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI + + N+ HPATR FQA+RI++N+E+E++ Q L A K L G L V+SFH Sbjct: 185 ADLIARICKSKERNK-HPATRVFQAIRIYINSELEQIDQALEGALKVLAPQGRLSVISFH 243 Query: 252 SLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK+F S V + + + K P+ E+V N+RSRS+ Sbjct: 244 SLEDRIVKRFIRRHSQGMSVPHGLPITEAEINKTRLLKAVGKATKPSTEEVEMNKRSRSS 303 Query: 310 KLRAGMR 316 LR R Sbjct: 304 VLRVAER 310 >gi|295116225|emb|CBL37072.1| S-adenosyl-methyltransferase MraW [butyrate-producing bacterium SM4/1] Length = 382 Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats. Identities = 103/321 (32%), Positives = 174/321 (54%), Gaps = 10/321 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VLL + + LN P + +D T G GG++ G +I LD+D A++ E Sbjct: 5 HTSVLLYETVDSLNIRPDGIYVDGTLGGGGHASLVLSRLGEGGRLIGLDQDADAIAAATE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS-GP 132 ++ Y ++ ++ + + +++ + G VDG+ DLGVSS Q+D +RGF++++ P Sbjct: 65 RLKPYGDRVTVIRTNYENIKEALASLGIAKVDGIYLDLGVSSYQLDTAERGFTYREDDAP 124 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM +A D+VN + +L RI+ GE++ A IA IVK RQ +T +L Sbjct: 125 LDMRMDQRRSETAKDIVNGYSEMELYRIIRDYGEDRFAKNIAKHIVKARQEKEIETAGEL 184 Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 + +I+ + + HPA R+FQA+RI +N E++ L + + + L GG L V++F Sbjct: 185 TEIIRAAIPAKIRATGGHPAKRTFQAIRIELNRELQVLENSIDTMIELLNPGGRLSVITF 244 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK F + + + +T+K ++P+ E+++ N+RS+SA Sbjct: 245 HSLEDRIVKNRFRINENPCTCPPEFPVCMCGKKSRGRVVTRKPILPSDEELSANKRSKSA 304 Query: 310 KLRAGMRTVERSIEDDSFVHL 330 KL + RS + ++F L Sbjct: 305 KLECSKKQAIRSSKPEAFRGL 325 >gi|116491168|ref|YP_810712.1| SAM-dependent methyltransferase for cell envelope biogenesis [Oenococcus oeni PSU-1] gi|290890684|ref|ZP_06553754.1| hypothetical protein AWRIB429_1144 [Oenococcus oeni AWRIB429] gi|122276650|sp|Q04ES5|RSMH_OENOB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|116091893|gb|ABJ57047.1| SAM-dependent methyltransferase for cell envelope biogenesis [Oenococcus oeni PSU-1] gi|290479659|gb|EFD88313.1| hypothetical protein AWRIB429_1144 [Oenococcus oeni AWRIB429] Length = 314 Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats. Identities = 108/308 (35%), Positives = 167/308 (54%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77 HV V L + + L + +DAT G GG++ K +V + D+D A+ ++ Sbjct: 7 HVTVFLRQAVENLAVKTNGIYVDATLGGGGHTDLLLKKALHGHVYSFDQDENAIDFNKKR 66 Query: 78 MRDY--KEQFSLFQATFSQL---QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + SL + F L + + +DG+VFDLGVSS Q D RGFS++ Sbjct: 67 FSKEISEGRLSLIHSNFQNLIKELNLLKVFAIDGIVFDLGVSSPQFDDEKRGFSYRSDAR 126 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S + A +VN KDL I+ GEEK AS IA I+KRR+ P TT++L Sbjct: 127 LDMRMDQSQSLDAYQIVNTWEYKDLASIINRYGEEKFASSIARKIIKRREVQPIITTEEL 186 Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 I++ + + + HPA ++FQA+RI VN+E+ L + L+ A + L +GG + V++F Sbjct: 187 VETIKEALPDKILHKKGHPAKKTFQAIRIAVNDELNVLQEALKQASQLLNSGGRISVITF 246 Query: 251 HSLEDRLVKKFFASRSGK-VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK FF + K + + +P F+ +TK ++P+ E++ N R+ SA Sbjct: 247 QSLEDRIVKHFFNQLATKNQLPSKLPVPDKFIQEEFKLLTKHPLIPSVEEIEENHRAHSA 306 Query: 310 KLRAGMRT 317 KLR + Sbjct: 307 KLRVLEKN 314 >gi|317473246|ref|ZP_07932543.1| MraW methylase [Anaerostipes sp. 3_2_56FAA] gi|316899341|gb|EFV21358.1| MraW methylase [Anaerostipes sp. 3_2_56FAA] Length = 303 Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats. Identities = 96/300 (32%), Positives = 160/300 (53%), Gaps = 9/300 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 +H VLL++ I L P + +D T G GG++ I +D+D A+ Sbjct: 4 EHASVLLDETIRELKIKPDGIYVDGTLGGGGHAFHVLNRLSEKGRYIGIDQDEDAIRAST 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + ++++ ++ + + + + D G VDG++ DLGVSS Q+D DRGF++++ P Sbjct: 64 KRLAPFQDKVTIVRDNYVNMPKVLKDLGISRVDGILLDLGVSSFQLDEKDRGFTYREDVP 123 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM SA D+VN + ++L I+ GE+K A IA I R+ P +TT L Sbjct: 124 LDMRMDQRQTFSARDIVNGYSEQELFHIIRDYGEDKFAKNIAKHIAAEREKVPIETTGQL 183 Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+ + + HPA R+FQA+RI N E+E L L + L G L +++F Sbjct: 184 IEVIKHAIPMKVRAVGGHPAKRTFQAIRIECNRELEVLKTSLDQMIELLNPEGRLCIITF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK+ F I + + + + IT+K ++PT+E++ N+R++S+ Sbjct: 244 HSLEDRIVKRAFRKNENPCTCPPNFPICTCGNESKGKVITRKPIIPTEEELMRNKRAKSS 303 >gi|327484905|gb|AEA79312.1| rRNA small subunit methyltransferase H [Vibrio cholerae LMA3894-4] Length = 316 Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats. Identities = 120/323 (37%), Positives = 174/323 (53%), Gaps = 23/323 (7%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 M+++ H+ VLL + I L P + +D TFG GG+SR+ + ++D Sbjct: 1 MTASFQ-----HISVLLNESIEGLAIKPDGIYIDGTFGRGGHSRTILAQLGPEGRLYSID 55 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCG 121 RDP A++ Q+ +F++ FS + +Y VDGV+FDLGVSS Q+D Sbjct: 56 RDPQAIAEAQKI---DDPRFTIIHGPFSGIAEYAQRYDLVGKVDGVLFDLGVSSPQLDDA 112 Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF K GPLDMRM SG+ S + QA++ D+T ++ GE+K A RIA AIV+ R Sbjct: 113 ERGFSFMKDGPLDMRMDPTSGMPVSAWLAQADLDDITWVIREFGEDKHARRIAKAIVEYR 172 Query: 181 QSA---PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 ++ P T L+ LI S + HPATR+FQA RI++N+E+EE+ LR A Sbjct: 173 ENELNEPLTRTSQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALRGASD 232 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSIT-KKVV 293 L G L V+SFHSLEDR+VK+F S + + + T K + Sbjct: 233 ILAPQGRLSVISFHSLEDRMVKRFMRKESQGPEVPHGLPLTQEQIRALGSAKMKTVGKAL 292 Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316 P+ ++V N RSRS+ LR + Sbjct: 293 KPSDQEVELNPRSRSSVLRVAEK 315 >gi|257066696|ref|YP_003152952.1| S-adenosyl-methyltransferase MraW [Anaerococcus prevotii DSM 20548] gi|256798576|gb|ACV29231.1| S-adenosyl-methyltransferase MraW [Anaerococcus prevotii DSM 20548] Length = 306 Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats. Identities = 111/307 (36%), Positives = 165/307 (53%), Gaps = 12/307 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 +H+PVL ++ I LN P + LD T G GG+S+ + +IA+D+D A+ + Sbjct: 4 EHIPVLAKETIENLNINPDGIYLDLTLGKGGHSKMILERLSDKGRLIAIDQDKEAIEAAK 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E +RD+ + + F + + D G +DG + D+GVSS QID DRGFS+ K GP Sbjct: 64 ENLRDF-SNVTFVNSNFENFEKALEDLGLDLIDGALMDIGVSSYQIDNADRGFSYMKDGP 122 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ + ++A +VN+ + +L RI GEE+ A IA IV R TT L Sbjct: 123 LDMRMNQDNELTAEVIVNEYSQDELERIFFEYGEERFARAIARNIVNLRDEERIDTTFKL 182 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++ K++ K+ HP R FQALRI VN E+E L + LK G + +++FH Sbjct: 183 REIVAKSI---KSQDAHPEKRVFQALRIEVNRELEVLENTIERVVDHLKKDGRIAIITFH 239 Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK F + + + H A + IT+K V ++ ++ N RS+ AK Sbjct: 240 SLEDRIVKNKFKDLARDCICPPEFPVCVCDHRAKIKIITRKPVTASKAELRDNSRSKPAK 299 Query: 311 LRAGMRT 317 LR G R Sbjct: 300 LRVGQRI 306 >gi|75909403|ref|YP_323699.1| S-adenosyl-methyltransferase MraW [Anabaena variabilis ATCC 29413] gi|123608960|sp|Q3M882|RSMH_ANAVT RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|75703128|gb|ABA22804.1| methyltransferase [Anabaena variabilis ATCC 29413] Length = 305 Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats. Identities = 125/329 (37%), Positives = 182/329 (55%), Gaps = 28/329 (8%) Query: 1 MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN 60 M+S S K++S + H+PVL ++V+ L G LDAT G GG+SR + + Sbjct: 1 MKSHSAKSLS--VEEATFSHLPVLPQEVVTGLAVRSGGHYLDATVGGGGHSRLILEAAPD 58 Query: 61 VI--ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQI 118 V A+D+D A++ ++ + ++ EQ ++ F+ + P DGV+ DLGVSS + Sbjct: 59 VRLTAVDQDGDALTAAKKELAEFGEQVKFVRSNFAAYE--FPVASFDGVLADLGVSSYHL 116 Query: 119 DCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177 D +RGFSF+ LDMRM +SA+DV+N + +L I GEE+ + RIA IV Sbjct: 117 DTPERGFSFRHQANLDMRMDQRQSLSAADVINDWDEVELANIFFKYGEERLSRRIARRIV 176 Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236 ++R PF TT +L+ I +V + RIHPATR FQALRI VN+E++ L L A Sbjct: 177 EKR---PFHTTTELAEAIASSVPPKYRYARIHPATRVFQALRIVVNDELKSLETFLEKAP 233 Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296 KAL GG + ++SFHSLEDRLVK + + +TKK ++ T Sbjct: 234 KALVPGGRIAIISFHSLEDRLVKHGLRNS-----------------PSLKVLTKKPIIAT 276 Query: 297 QEDVAFNRRSRSAKLRAGMRTVERSIEDD 325 + ++A N RSRSAKLR + E ED+ Sbjct: 277 EAEIANNPRSRSAKLRIAEKKAEMGQEDN 305 >gi|218131855|ref|ZP_03460659.1| hypothetical protein BACEGG_03477 [Bacteroides eggerthii DSM 20697] gi|217986158|gb|EEC52497.1| hypothetical protein BACEGG_03477 [Bacteroides eggerthii DSM 20697] Length = 305 Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats. Identities = 106/313 (33%), Positives = 161/313 (51%), Gaps = 16/313 (5%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69 + H+PVLL + +N P +D TFG GG+SR G ++ D+D Sbjct: 1 MKEETTYHIPVLLMPSVDGMNIRPDGTYVDMTFGGGGHSREILSRLGEGGRLLGFDQDED 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFS 126 A F+ ++ F L +++ G VD ++ DLGVSS D +RGFS Sbjct: 61 AEQNIVN-----DPHFTFVRSNFRYLHNFLRYHGIEQVDAILADLGVSSHHFDDSERGFS 115 Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 F+ G LDMRM+ +G +A+D+VN + L I + GE K + ++A IVK R + Sbjct: 116 FRFDGMLDMRMNKRAGCTAADIVNTYEEERLADIFYLYGELKNSRKLASVIVKARATRQI 175 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 T D +I+ F + + FQALRI VN E+E L + L +A +ALK GG L Sbjct: 176 STIGDFLDIIKPL--FGREREKKELAKVFQALRIEVNREMEALKEMLYAATEALKPGGRL 233 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 +V+++HSLEDR+VK + + + A + + P F+ + KV+VP + ++ N R Sbjct: 234 VVITYHSLEDRMVKNIMKTGNIEGKAEKDFFGNIQTP--FRLVNNKVIVPDETEIERNPR 291 Query: 306 SRSAKLRAGMRTV 318 SRSAKLR + Sbjct: 292 SRSAKLRIAEKIE 304 >gi|308233784|ref|ZP_07664521.1| S-adenosyl-methyltransferase MraW [Atopobium vaginae DSM 15829] gi|328943767|ref|ZP_08241232.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Atopobium vaginae DSM 15829] gi|327491736|gb|EGF23510.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Atopobium vaginae DSM 15829] Length = 319 Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats. Identities = 113/310 (36%), Positives = 177/310 (57%), Gaps = 12/310 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HVPV+L +V L+ PG V+ D T G G++ + + + +D+D A+ E Sbjct: 7 HVPVMLTEVEQELSLKPGDVVCDCTLGGAGHTVALAQHVAPDGLSLGIDQDDAALKAASE 66 Query: 77 TMRDYKEQFS--LFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 M + + FSQL + + GVD +FDLGVSS Q+D +RGFS+ + Sbjct: 67 RMDRLAPCVTYKFLKGNFSQLDNLLVQAQVIGVDAFLFDLGVSSPQLDVAERGFSYHEDA 126 Query: 132 PLDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM + ++A++V+ N DLTRIL G+EK A+RIAH IV++R+ +P +TT Sbjct: 127 PLDMRMDPRNNTLTAAEVIQTYNEADLTRILRSYGDEKFAARIAHVIVEQRKLSPIRTTL 186 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L ++++ + + + + HPA ++FQALRI VN+E++ L GL+ A + L GG + ++ Sbjct: 187 ELVEVVKRAIPAAARRHGKHPARKTFQALRIEVNHELDVLETGLKQAIRWLNPGGRICII 246 Query: 249 SFHSLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 ++HSLED+LVK + + + + V +TKK +V T +V N R+R Sbjct: 247 AYHSLEDKLVKHILSEYAQGCVCPADFPVCVCGRKPVLDILTKKPLVATPSEVECNPRAR 306 Query: 308 SAKLRAGMRT 317 SA LRA RT Sbjct: 307 SALLRAARRT 316 >gi|291615182|ref|YP_003525339.1| S-adenosyl-methyltransferase MraW [Sideroxydans lithotrophicus ES-1] gi|291585294|gb|ADE12952.1| S-adenosyl-methyltransferase MraW [Sideroxydans lithotrophicus ES-1] Length = 308 Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats. Identities = 114/305 (37%), Positives = 167/305 (54%), Gaps = 12/305 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H VLL + + L + +D TFG GG+SR + ++ALD+DP AV+ +E Sbjct: 7 HATVLLNEAVEALRVKADGIYVDCTFGRGGHSRLILEKLGERGRLVALDKDPMAVAAARE 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +F L + F L + + G VDGV+ DLGVSS Q+D RGFSF+ PL Sbjct: 67 I---GDARFQLQHSGFEHLGEVLRGLGIEKVDGVLLDLGVSSPQLDDESRGFSFRFDAPL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S G +A++ + A+ +L ++ GEE+ A +IA AIV RQ TT+ LS Sbjct: 124 DMRMDTSRGQTAAEWLATADEGELAEVIRDYGEERFARQIARAIVAARQERAILTTKQLS 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++ + V + + +PATR+FQA+RI++N E+EEL L LKAGG + V+SFHS Sbjct: 184 DIVAQCVRTREPGK-NPATRTFQAVRIYINRELEELESVLPQCVDHLKAGGRMAVISFHS 242 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ-SITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK F + +++ + + K + + E+VA N R+RSA L Sbjct: 243 LEDRMVKHFMRDMAQGDKLPKNVPIRAVDVPQGKMRLAGKPIYASAEEVAANPRARSAVL 302 Query: 312 RAGMR 316 R R Sbjct: 303 RVAER 307 >gi|220925316|ref|YP_002500618.1| S-adenosyl-methyltransferase MraW [Methylobacterium nodulans ORS 2060] gi|263456456|sp|B8IMX2|RSMH_METNO RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|219949923|gb|ACL60315.1| S-adenosyl-methyltransferase MraW [Methylobacterium nodulans ORS 2060] Length = 339 Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats. Identities = 139/316 (43%), Positives = 199/316 (62%), Gaps = 8/316 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPG-KVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73 + H+PVLL++V + L G +++D TFGAGGY+R+ + G VIA+DRDP A++ Sbjct: 4 MPPHIPVLLKEVRSALRLGEGPGIVVDGTFGAGGYTRAILEADPGQRVIAIDRDPTAIAT 63 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 G+ + L Q F +L V +G VDGVV D+GVSSMQ+D RGFSF++ Sbjct: 64 GRGLAAAMAGRLMLVQGRFGELDRLVRAQGIETVDGVVLDIGVSSMQLDQAQRGFSFRQD 123 Query: 131 GPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 GPLDMRM G SA+D+VN+A+ +L I+ GEE++A +A AI++ R+ TT Sbjct: 124 GPLDMRMESGGTSAADLVNEASEAELADIIYHYGEERRARAVARAILEARRRGRIATTAT 183 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ ++ V + IHPATR+FQALRI VN+E+ EL + L +AE+ L+ GG L VV+F Sbjct: 184 LAEIVASVVRPEPGSGIHPATRTFQALRIAVNDELGELQRALHAAERILRPGGRLAVVTF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRS 308 HSLEDR+VK+FF++RSG+ ++ +P PA F +TK + P++ + N R+RS Sbjct: 244 HSLEDRIVKQFFSARSGRAVSASRHLPMAEKPAPRSFTLVTKGPIGPSEAEATANPRARS 303 Query: 309 AKLRAGMRTVERSIED 324 AKLRAG RT E Sbjct: 304 AKLRAGERTDAPIPEP 319 >gi|114045888|ref|YP_736438.1| S-adenosyl-methyltransferase MraW [Shewanella sp. MR-7] gi|123030979|sp|Q0HZS4|RSMH_SHESR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|113887330|gb|ABI41381.1| S-adenosyl-methyltransferase MraW [Shewanella sp. MR-7] Length = 313 Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats. Identities = 116/307 (37%), Positives = 172/307 (56%), Gaps = 13/307 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H+ VLLE+ + LN + +D TFG GG+SR + +IA+DRDP A+ ++ Sbjct: 7 HLSVLLEETVGGLNIKDDGIYIDGTFGRGGHSRQILQRLGENGRLIAIDRDPQAIEAAKQ 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 D +F + F QL DYV + G +DGV+ DLGVSS Q+D +RGFSF + GP Sbjct: 67 FADD--PRFQIVHGGFGQLADYVEELGLVGKIDGVLLDLGVSSPQLDDAERGFSFLRDGP 124 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G +A+ + +A ++D+ + GEEK A IA I R PF T+DL Sbjct: 125 LDMRMDNSQGETAAQWLARAEIEDMAWVFKTYGEEKNARHIARCIAADRDKTPFLRTKDL 184 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI + + N+ HPATR FQA+RI++N+E++++ Q L A L G L ++SFH Sbjct: 185 ADLIARITKNKERNK-HPATRVFQAIRIYINSELDQIDQALEGALTVLAPQGRLSIISFH 243 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI--TKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK+F S + + + + K ++P+ E++ N R+RS+ Sbjct: 244 SLEDRIVKRFIRRHSQGESVPHGLPITEDQINKSRKLRAIGKAIMPSDEEIERNARARSS 303 Query: 310 KLRAGMR 316 LR R Sbjct: 304 VLRIAER 310 >gi|289547926|ref|YP_003472914.1| S-adenosyl-methyltransferase MraW [Thermocrinis albus DSM 14484] gi|289181543|gb|ADC88787.1| S-adenosyl-methyltransferase MraW [Thermocrinis albus DSM 14484] Length = 290 Score = 361 bits (926), Expect = 1e-97, Method: Composition-based stats. Identities = 134/307 (43%), Positives = 183/307 (59%), Gaps = 24/307 (7%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCG 74 I H PVLLE LL GK+ +D T GAGG++R + VI +DRDP A+ Sbjct: 2 IMHHFPVLLETATDLLLGNGGKLYVDCTVGAGGHTRRILEKNPQAYVIGIDRDPQALKLA 61 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +E +R+++ +FSL+ A F L + + +GV DG +FDLG+S MQ+ RGFSFQ+ Sbjct: 62 EENLREFEGRFSLYHANFVHLDEVLLQEGVEQVDGFLFDLGMSMMQLKSA-RGFSFQRDE 120 Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM S +A VVN+ + +DL RIL GEE ASRIA AIV RR+ P +TT + Sbjct: 121 FLDMRMDPSDPITAYHVVNRYSQRDLERILREYGEEPYASRIARAIVLRRKEKPIETTGE 180 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L ++ V + + RIHPATR FQA+RI VN E+ L + L K L+ GG L+V+SF Sbjct: 181 LVQIVLSVVPY-RRGRIHPATRVFQAIRIEVNGELRNLKEALPKTLKFLRKGGRLVVISF 239 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDR+VK FF S ++ + +TKK + P++E++ N SRSAK Sbjct: 240 HSLEDRIVKNFFKEHSHEI----------------KPLTKKPITPSREEIEKNPPSRSAK 283 Query: 311 LRAGMRT 317 LRAG + Sbjct: 284 LRAGEKV 290 >gi|258508273|ref|YP_003171024.1| S-adenosyl-methyltransferase MraW [Lactobacillus rhamnosus GG] gi|257148200|emb|CAR87173.1| S-adenosyl-methyltransferase MraW [Lactobacillus rhamnosus GG] gi|259649590|dbj|BAI41752.1| methyltransferase [Lactobacillus rhamnosus GG] Length = 313 Score = 361 bits (926), Expect = 1e-97, Method: Composition-based stats. Identities = 110/313 (35%), Positives = 156/313 (49%), Gaps = 10/313 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73 T H VLL++ A L +DAT G GG++R +IA D+D A++ Sbjct: 2 TEFKHETVLLKEATAALAVKSDGTYVDATLGRGGHTRQIINQLTNGRLIAFDQDEAAIAA 61 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + Q +L F L + D VDGV++DLGVSS Q D RGFS++ Sbjct: 62 VKRQFGTLPPQLTLVHRNFRDLSAALADLDIRQVDGVLYDLGVSSPQFDDSKRGFSYRFD 121 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM + A +VN+ +L RI GEE + +IA I + R AP TT Sbjct: 122 APLDMRMDQRQTLDAKTIVNEWPYAELVRIFSRYGEEHFSKQIARRIEQARAQAPITTTF 181 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L LI+ + + HPA + FQA+RI VN+E+ L L A K + GG + V+ Sbjct: 182 QLVELIKAGIPAKARRTGGHPAKKVFQAIRIAVNDELSALEASLEQALKLINVGGRISVI 241 Query: 249 SFHSLEDRLVKKFFASRS--GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 +F SLEDRLVK F S V ++P A P +Q + +K ++P+ ++A N R+ Sbjct: 242 TFQSLEDRLVKTMFKEVSTVQDVPRGLPVVPEAAQPH-YQLVNRKPILPSAAELAENHRA 300 Query: 307 RSAKLRAGMRTVE 319 SAKLR + Sbjct: 301 HSAKLRVIEKIRN 313 >gi|154500741|ref|ZP_02038779.1| hypothetical protein BACCAP_04419 [Bacteroides capillosus ATCC 29799] gi|150270630|gb|EDM97939.1| hypothetical protein BACCAP_04419 [Bacteroides capillosus ATCC 29799] Length = 313 Score = 361 bits (926), Expect = 1e-97, Method: Composition-based stats. Identities = 114/312 (36%), Positives = 168/312 (53%), Gaps = 8/312 (2%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFA 70 + H PVLL++ I LN P +DAT G G+SR + +I +DRD A Sbjct: 1 MSEMEFSHKPVLLQECIDGLNIDPTGTYVDATLGRAGHSREIARRLTTGRLICIDRDQAA 60 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSF 127 + + ++ +L F L D + +D GV+ DLGVSS Q+D RGFS+ Sbjct: 61 LDAAPGRLEGLMDRVTLVHGNFGDLADILDRLKLDKLSGVLADLGVSSPQLDDASRGFSY 120 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 PLDMRM S ++A VVN+ +++ RIL GEE+ A IA AIV+ R+ AP + Sbjct: 121 MADAPLDMRMDQSEALTARTVVNEWPQEEIRRILFQFGEERYAPAIAAAIVRAREKAPIE 180 Query: 187 TTQDLSSLIQKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT +L +I+ + + HPA RSFQA+RI VN+E+ + +++A AL GG L Sbjct: 181 TTLELVDIIRSAMPAHALCEKQHPAKRSFQAIRIAVNDELSAADKLIQAAVPALAPGGRL 240 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 ++SFHSLEDR+VK FA+ + + V + + KK +V +E++ N Sbjct: 241 AIISFHSLEDRIVKNAFAAFAKGCTCPPDFPVCVCGKKPVIRLVNKKPIVSGEEELNENA 300 Query: 305 RSRSAKLRAGMR 316 R+RSAKLR + Sbjct: 301 RARSAKLRIAEK 312 >gi|117924071|ref|YP_864688.1| S-adenosyl-methyltransferase MraW [Magnetococcus sp. MC-1] gi|263456390|sp|A0L5N9|RSMH_MAGSM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|117607827|gb|ABK43282.1| S-adenosyl-methyltransferase MraW [Magnetococcus sp. MC-1] Length = 313 Score = 361 bits (926), Expect = 1e-97, Method: Composition-based stats. Identities = 121/311 (38%), Positives = 169/311 (54%), Gaps = 14/311 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VLL++ +A L P G LD TFG GG+SR + VI LDRD A++ GQ Sbjct: 5 HTTVLLQETVAALAPQRGGCYLDGTFGGGGHSRLLLEQCAPTGRVIGLDRDADAIANGQA 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + +L +A F+Q+ + + + DG + DLGVSS Q+D +RGFSF +SGPL Sbjct: 65 LVAQMAGRLTLVKAPFAQVAEVLQQLEIAALDGAMLDLGVSSHQLDTAERGFSFIRSGPL 124 Query: 134 DMRMS--CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 DMRM + +A+ ++N + L I GEE+ A RIA +VK RQ PF TT DL Sbjct: 125 DMRMDGDSTTPTAAALLNTLDADALADIFFHYGEERHARRIARMVVKVRQQHPFTTTTDL 184 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + I +RIHPATR FQ LRI VN E+++L Q L LK GG L V+SFH Sbjct: 185 AERIAHMTPG--YSRIHPATRVFQGLRIAVNEELQQLEQALSVLIGLLKPGGHLAVISFH 242 Query: 252 SLEDRLVKKFFASRSGKVMAV----RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 SLEDR+VK+ F + + + A + + K + P++ ++ N R+R Sbjct: 243 SLEDRIVKRLFRDAAKPPEDPVLRGLPIAQAQRPKATLKLVHNKPLTPSEAEIEQNPRAR 302 Query: 308 SAKLRAGMRTV 318 SAKLR + Sbjct: 303 SAKLRVAQKLA 313 >gi|237720371|ref|ZP_04550852.1| S-adenosyl-methyltransferase mraW [Bacteroides sp. 2_2_4] gi|229450122|gb|EEO55913.1| S-adenosyl-methyltransferase mraW [Bacteroides sp. 2_2_4] Length = 304 Score = 361 bits (926), Expect = 1e-97, Method: Composition-based stats. Identities = 107/304 (35%), Positives = 163/304 (53%), Gaps = 16/304 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HVPVLL++ + +N P +D TFG G+SR G ++ D+D A E Sbjct: 9 HVPVLLKESVDGMNIQPDGTYVDVTFGGAGHSREILSRLGEGGRLLGFDQDEDA-----E 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 F ++ F LQ+++ VD ++ DLGVSS D +RGFSF+ G L Sbjct: 64 RNIVNDPHFIFVRSNFRYLQNFLRYHDIEQVDAILADLGVSSHHFDDSERGFSFRFDGAL 123 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +GI+A+D+VN + L +L + GE K + ++A IVK R +T + Sbjct: 124 DMRMNKRAGITAADIVNTYEEERLANLLYLYGELKNSRKLASVIVKARSGQNIRTIGEFL 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ F + + FQALRI VN E+E L + L++A +ALK GG L+V+++HS Sbjct: 184 EIIKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLQAATEALKPGGRLVVITYHS 241 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK + + + A + P F+ + KV+VP + ++ N RSRSAKLR Sbjct: 242 LEDRMVKNIMKTGNVEGKAESDFFGNLQTP--FRLVNNKVIVPDEAEIERNPRSRSAKLR 299 Query: 313 AGMR 316 + Sbjct: 300 IAEK 303 >gi|188585922|ref|YP_001917467.1| S-adenosyl-methyltransferase MraW [Natranaerobius thermophilus JW/NM-WN-LF] gi|262825152|sp|B2A2G4|RSMH_NATTJ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|179350609|gb|ACB84879.1| S-adenosyl-methyltransferase MraW [Natranaerobius thermophilus JW/NM-WN-LF] Length = 315 Score = 361 bits (926), Expect = 1e-97, Method: Composition-based stats. Identities = 117/307 (38%), Positives = 176/307 (57%), Gaps = 9/307 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 +H PV++EK I LL P +VI+D T G G+S ++ +D+DP A G+ Sbjct: 4 NHEPVMIEKTIELLKPESAQVIVDGTMGGAGHSLRIINSLPPEGILVGIDQDPDAYEAGK 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + Y + +F F ++ G VDG++ DLGVSS Q+D DRGF++Q++ P Sbjct: 64 SLLEAYGNKAKVFNDNFVNIKHICERIGIHYVDGILLDLGVSSYQLDNKDRGFTYQENAP 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S I+AS+VVN + + L I+ GEEK A RIA IV+ RQ TTQ+L Sbjct: 124 LDMRMDKSQKITASEVVNTYSEQKLAEIIREYGEEKWAQRIAQFIVQARQDQEINTTQEL 183 Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+ + ++ + HPA R+FQALRI VN E++ L ++ + L+ G +V++F Sbjct: 184 VKVIKAAIPKGARKSGPHPAKRTFQALRIHVNGELDSLRTAIQEGIRLLRGKGRFVVITF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK+ F + + + I A + +TKK ++P+Q ++ N R+RSA Sbjct: 244 HSLEDRIVKQEFKKLAQTCVCPTKLPICQCKGEATVKLLTKKPLLPSQGEIEINPRARSA 303 Query: 310 KLRAGMR 316 KLRA R Sbjct: 304 KLRAVER 310 >gi|258620868|ref|ZP_05715902.1| S-adenosyl-methyltransferase mraW [Vibrio mimicus VM573] gi|258586256|gb|EEW10971.1| S-adenosyl-methyltransferase mraW [Vibrio mimicus VM573] Length = 316 Score = 361 bits (926), Expect = 1e-97, Method: Composition-based stats. Identities = 120/323 (37%), Positives = 173/323 (53%), Gaps = 23/323 (7%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 M+++ H+ VLL + I L P + +D TFG GG+SR+ + ++D Sbjct: 1 MTASFQ-----HISVLLNESIEGLAIKPDGIYIDGTFGRGGHSRTILAQLGPQGRLYSID 55 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCG 121 RDP A++ Q +F++ FS + +Y VDGV+FDLGVSS Q+D Sbjct: 56 RDPQAIAEAQNI---DDPRFTIIHGPFSGIAEYAQRYDLVGKVDGVLFDLGVSSPQLDDA 112 Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF K GPLDMRM SG+ S + QA++ D+T ++ GE+K A RIA AIV+ R Sbjct: 113 ERGFSFMKDGPLDMRMDPTSGMPVSAWLAQADLDDITWVIREFGEDKHARRIAKAIVEYR 172 Query: 181 QSA---PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 ++ P T L+ LI S + HPATR+FQA RI++N+E+EE+ LR A Sbjct: 173 ENELNEPLTRTSQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALRGASD 232 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSIT-KKVV 293 L G L V+SFHSLEDR+VK+F S + + + T K + Sbjct: 233 ILAPQGRLSVISFHSLEDRMVKRFMRKESQGPEVPHGIPLTQDQIRALGSAKMKTVGKAL 292 Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316 P+ ++V N RSRS+ LR + Sbjct: 293 KPSDQEVELNPRSRSSVLRVAEK 315 >gi|127514389|ref|YP_001095586.1| S-adenosyl-methyltransferase MraW [Shewanella loihica PV-4] gi|262826527|sp|A3QIM9|RSMH_SHELP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|126639684|gb|ABO25327.1| S-adenosyl-methyltransferase MraW [Shewanella loihica PV-4] Length = 313 Score = 361 bits (926), Expect = 1e-97, Method: Composition-based stats. Identities = 120/307 (39%), Positives = 174/307 (56%), Gaps = 13/307 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H+ VLL + +A LN P + +D TFG GG+SR K +IA+DRDP A++ ++ Sbjct: 7 HLSVLLTETVAGLNIKPEGIYIDGTFGRGGHSREVLKQLGPNGRLIAIDRDPQAIAAAEQ 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 D +FS+ F QL YV D G +DG++FD GVSS Q+D +RGFSF + GP Sbjct: 67 FADDA--RFSIVHGGFGQLAQYVDDLGLRGKIDGILFDFGVSSPQLDDAERGFSFLRDGP 124 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G +A++ + +A ++D+ + GEEK A IA I R PF T++L Sbjct: 125 LDMRMDNSQGETAAEWLARAEIEDMAWVFKTYGEEKNARHIARCIAADRDKTPFLRTKEL 184 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI + + N+ HPATR FQA+RI++N+E+E++ Q L A L G L V+SFH Sbjct: 185 ADLIARVSKSKERNK-HPATRVFQAIRIYINSELEQIDQALEGAVTVLAPQGRLSVISFH 243 Query: 252 SLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK+F S V + + + K + P+ E++ N R+RS+ Sbjct: 244 SLEDRMVKRFIRRHSQGESVPHGLPLTEAEINKTRLLKAVGKAIKPSAEEIDRNARARSS 303 Query: 310 KLRAGMR 316 LR R Sbjct: 304 VLRVAER 310 >gi|238784576|ref|ZP_04628583.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia bercovieri ATCC 43970] gi|238714542|gb|EEQ06547.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia bercovieri ATCC 43970] Length = 320 Score = 361 bits (926), Expect = 1e-97, Method: Composition-based stats. Identities = 120/312 (38%), Positives = 176/312 (56%), Gaps = 15/312 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H VLL++ + LN + +D TFG GG+SR +IA+DRDP A+ + Sbjct: 13 KHTSVLLDEAVNGLNIRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDRDPQAIEAAK 72 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +FS+ FS+L YV + +DG++ DLGVSS Q+D +RGFSF + G Sbjct: 73 SI---TDPRFSIVHGPFSELAHYVRELDLVGRIDGILLDLGVSSPQLDDPERGFSFMRDG 129 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + G+SA++ + +A+ D+ +L GEE+ A R+A AIV+R + P T++ Sbjct: 130 PLDMRMDPTRGLSAAEWLMKASADDIAWVLKTFGEERFAKRLAKAIVERNLTQPMTRTKE 189 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ LI F + ++ HPATRSFQA+RI++N+E+EE+ + L A + L G L V+SF Sbjct: 190 LADLIANASPFREKHK-HPATRSFQAIRIYINSELEEIERALDGAHEVLADEGRLSVISF 248 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNRRSR 307 HSLEDR+VK F RS + + A T K + +P +VA N R+R Sbjct: 249 HSLEDRIVKNFIRQRSRGPQVPAGLPLTEAQLRSMGGRTMKSIGKMMPADAEVAENPRAR 308 Query: 308 SAKLRAGMRTVE 319 S+ LR R E Sbjct: 309 SSVLRFAERIKE 320 >gi|332712413|ref|ZP_08432340.1| S-adenosyl-methyltransferase MraW [Lyngbya majuscula 3L] gi|332348887|gb|EGJ28500.1| S-adenosyl-methyltransferase MraW [Lyngbya majuscula 3L] Length = 304 Score = 361 bits (926), Expect = 1e-97, Method: Composition-based stats. Identities = 119/307 (38%), Positives = 168/307 (54%), Gaps = 22/307 (7%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAV 71 + T HV VL +++I L PG LDAT G GG++ +V A+DRD A+ Sbjct: 9 NTTPFFHVSVLSQELIEGLAICPGGHYLDATVGGGGHTELILAAAPDVEVTAIDRDANAI 68 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + + Y + + +Q F++ Q D+ DG++ DLGVSS Q+D +RGFSF+ + Sbjct: 69 AAAKTRLASYNGRVNFWQGNFAEYQP--NDRVFDGIIADLGVSSAQLDLPERGFSFRHAA 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM S ++A D++N L + GEE+ + R+A IV++R PFQTT + Sbjct: 127 QLDMRMDQSQSLTAKDIINNWGEVRLADVFYKYGEERLSRRMARRIVEKR---PFQTTTE 183 Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L++ I V + RIHPATR FQALRI VN E+E L L A LK GG L ++S Sbjct: 184 LANAIASCVPPKYRYGRIHPATRVFQALRIVVNQELESLESFLDIAPHWLKPGGRLGIIS 243 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDR+VK F S ++ + +TKK V E++ N R+RSA Sbjct: 244 FHSLEDRIVKHKFRELSTNC-------------SLLRVLTKKPTVAQAEEIQHNPRARSA 290 Query: 310 KLRAGMR 316 KLR R Sbjct: 291 KLRFAER 297 >gi|157825941|ref|YP_001493661.1| S-adenosyl-methyltransferase MraW [Rickettsia akari str. Hartford] gi|167011835|sp|A8GP28|RSMH_RICAH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|157799899|gb|ABV75153.1| S-adenosyl-methyltransferase MraW [Rickettsia akari str. Hartford] Length = 306 Score = 361 bits (926), Expect = 1e-97, Method: Composition-based stats. Identities = 122/306 (39%), Positives = 185/306 (60%), Gaps = 5/306 (1%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQ 75 + H+PV+L +V+ +L+P G+ LD TFGAGGYS++ + V+ALDRDP + + Sbjct: 2 LQTHIPVMLSEVLKVLDPKGGEFYLDCTFGAGGYSKAILESCDCYVVALDRDPNVIKKAE 61 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 E ++Y E+F F+ + +K DG+V DLGVSSMQ+D DRGFSF GPLDM Sbjct: 62 EIKQNYVERFDFIATNFADSFAKLKEKQFDGIVLDLGVSSMQLDVADRGFSFLHDGPLDM 121 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RMS G SA + VN K++ I+ G E + RIA +IV+ R++A +T L+ ++ Sbjct: 122 RMSGQGFSAEEFVNTLEEKEIADIIYKYGNESFSRRIAKSIVEYRKTARIDSTGKLAEIV 181 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + ++ F K +I PAT++FQA+RI++N+E+ EL + L + + LK G L+VVSFHSLED Sbjct: 182 RSSIGFRK-GKIDPATKTFQAIRIYINDELGELERFLMNVKNILKKDGRLVVVSFHSLED 240 Query: 256 RLVKKFFASRSGKVMAVRHMIPSN---AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 ++K FF S K +A + + IT K + P+ +++ N R+RSAKLR Sbjct: 241 MIIKNFFKENSEKPVARSKYAKDDIIIDPNKWLRIITNKALAPSDKEIRLNIRARSAKLR 300 Query: 313 AGMRTV 318 + + Sbjct: 301 TAKKIL 306 >gi|262037275|ref|ZP_06010755.1| S-adenosyl-methyltransferase MraW [Leptotrichia goodfellowii F0264] gi|261748703|gb|EEY36062.1| S-adenosyl-methyltransferase MraW [Leptotrichia goodfellowii F0264] Length = 307 Score = 361 bits (926), Expect = 1e-97, Method: Composition-based stats. Identities = 107/305 (35%), Positives = 174/305 (57%), Gaps = 10/305 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H PVL ++V+ + + +D T G GG++ K S+ VIA+D+D A++ ++ Sbjct: 4 HKPVLFDEVMENIIKKEKAIYVDCTLGGGGHTEGILKSSSDDSKVIAIDQDIEAINFAKK 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + +Y + +FQ F + V G VD ++ D+GVSS Q+D +RGFS++ L Sbjct: 64 RLENYGNKMEIFQDNFRNIDTVVYFAGFNKVDRILMDIGVSSNQLDNIERGFSYKYEAKL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +SA DVVN+ K++ I+ GEE ++ +IA IV+ R++ +TT +LS Sbjct: 124 DMRMNKELSVSAYDVVNKFAEKEIADIIYKYGEEPKSRKIAKNIVEYRKNKNIETTVELS 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++ K++ K+ + HP+ R+FQA+RIFVN E+E L + L A L GG L+V++FHS Sbjct: 184 DIVIKSI--GKSMKKHPSKRTFQAIRIFVNKELEVLEEALDKAVNLLNKGGKLLVITFHS 241 Query: 253 LEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK+ F + + ++ + +TKK + E++ N R+ SAKL Sbjct: 242 LEDRMVKEKFRKYENPCVCPPELPVCVCKKESLGKIVTKKPITAKNEELEINNRAHSAKL 301 Query: 312 RAGMR 316 R R Sbjct: 302 RIFER 306 >gi|269798180|ref|YP_003312080.1| S-adenosyl-methyltransferase MraW [Veillonella parvula DSM 2008] gi|269094809|gb|ACZ24800.1| S-adenosyl-methyltransferase MraW [Veillonella parvula DSM 2008] Length = 310 Score = 360 bits (925), Expect = 1e-97, Method: Composition-based stats. Identities = 105/307 (34%), Positives = 164/307 (53%), Gaps = 10/307 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS---FCKMGSNVIALDRDPFAVSCGQ 75 +H VLL + + + P + +D T G G++ + +I LD+D A+S + Sbjct: 4 NHTSVLLHETVDSVVTNPKGIYVDCTLGGAGHAHAVGEMLDPEGMIIGLDQDEDALSVAR 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + D K Q FS L++ + + G VDG +FDLGVSS Q+D +RGFS+ GP Sbjct: 64 QRLSDLKCQVLTIPTNFSNLKEALRNAGIYEVDGFIFDLGVSSYQLDTPERGFSYMNDGP 123 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM ++A ++VN+ + + L +I+ GEE+ A RI IV+ RQ TT +L Sbjct: 124 LDMRMDKDAPLTAEEIVNEYDSEQLLQIIRDYGEERWAKRIVEFIVEARQEKRITTTGEL 183 Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+ + + + HPA R+FQA+RI VN E+ L A LK G + V++F Sbjct: 184 VRIIKNAIPAKARQDGPHPAKRTFQAIRIEVNRELAILHDSFVDAVSMLKPKGKIGVITF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+ K+ F S + + H AV ++ K + P+ ++ N R+RSA Sbjct: 244 HSLEDRITKQTFKELSTACICPPQLPMCVCNHKAVVKAKN-KAIEPSIGEIEVNPRARSA 302 Query: 310 KLRAGMR 316 KLR ++ Sbjct: 303 KLRVAVK 309 >gi|294793912|ref|ZP_06759049.1| S-adenosyl-methyltransferase MraW [Veillonella sp. 3_1_44] gi|294455482|gb|EFG23854.1| S-adenosyl-methyltransferase MraW [Veillonella sp. 3_1_44] Length = 311 Score = 360 bits (925), Expect = 1e-97, Method: Composition-based stats. Identities = 105/307 (34%), Positives = 164/307 (53%), Gaps = 10/307 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS---FCKMGSNVIALDRDPFAVSCGQ 75 +H VLL + + + P + +D T G G++ + +I LD+D A+S + Sbjct: 5 NHTSVLLRETVDSVVTNPKGIYVDCTLGGAGHAHAVGEMLDPEGMIIGLDQDEDALSVAR 64 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + D K Q FS L++ + + G VDG +FDLGVSS Q+D +RGFS+ GP Sbjct: 65 QRLSDLKCQVLTIPTNFSNLKEALQNAGIYEVDGFIFDLGVSSYQLDTPERGFSYMNDGP 124 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM ++A ++VN+ + + L +I+ GEE+ A RI IV+ RQ TT +L Sbjct: 125 LDMRMDKDAPLTAEEIVNEYDSEQLLQIIRDYGEERWAKRIVEFIVEARQEKRITTTGEL 184 Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+ + + + HPA R+FQA+RI VN E+ L A LK G + V++F Sbjct: 185 VRIIKNAIPAKARQDGPHPAKRTFQAIRIEVNRELAILHDSFVDAVSMLKPKGKIGVITF 244 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+ K+ F S + + H AV ++ K + P+ ++ N R+RSA Sbjct: 245 HSLEDRITKQTFKELSTACICPPQLPVCVCNHKAVVKAKN-KAIEPSIGEIEVNPRARSA 303 Query: 310 KLRAGMR 316 KLR ++ Sbjct: 304 KLRVAVK 310 >gi|317154466|ref|YP_004122514.1| S-adenosyl-methyltransferase MraW [Desulfovibrio aespoeensis Aspo-2] gi|316944717|gb|ADU63768.1| S-adenosyl-methyltransferase MraW [Desulfovibrio aespoeensis Aspo-2] Length = 325 Score = 360 bits (925), Expect = 1e-97, Method: Composition-based stats. Identities = 120/307 (39%), Positives = 170/307 (55%), Gaps = 10/307 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VLL +VI L P PG LD T G GG+S + + G+ + LDRD A++ E Sbjct: 11 HTTVLLHEVIEWLRPKPGGRYLDGTLGMGGHSHALLERAGQGAELAGLDRDAQALALAGE 70 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + ++ LF+ FS+ ++ + G VDG V DLGVSS+Q+D +RGFSF GPL Sbjct: 71 RLAGMGDRAHLFRLPFSRFEEALDALGWETVDGAVLDLGVSSLQLDEAERGFSFLSDGPL 130 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM G SA+D+VN DL RI+ GE+ A +IA AI++ R T L+ Sbjct: 131 DMRMDPDCGPSAADLVNTLKHGDLARIIRTWGEDPLAGKIASAILRARDKEAIMRTLRLA 190 Query: 193 SLIQKTVYFSKNN--RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +++ + R HPATR+FQ LRI VN E EEL L++ L G L ++SF Sbjct: 191 EIVRLAYPPKMRHTARNHPATRTFQGLRIAVNREAEELEHYLQAIVGRLAPGARLAIISF 250 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR VK+ F + + H + + + +T+K ++P+ +++A N RSRSA Sbjct: 251 HSLEDRAVKRAFLADAKGCHCPPHQMHCTCNGVPSLKVLTRKPLIPSDDEMARNPRSRSA 310 Query: 310 KLRAGMR 316 KLR R Sbjct: 311 KLRVAER 317 >gi|315181138|gb|ADT88052.1| S-adenosyl-methyltransferase MraW [Vibrio furnissii NCTC 11218] Length = 316 Score = 360 bits (925), Expect = 1e-97, Method: Composition-based stats. Identities = 118/312 (37%), Positives = 168/312 (53%), Gaps = 18/312 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H+ VLL + I L P + +D TFG GG+SR+ + ++DRDP A++ Q+ Sbjct: 7 HISVLLHESIDGLAIKPDGIYIDGTFGRGGHSRTILSQLGPNGRLYSIDRDPQAIAEAQK 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +F++ FS + +Y VDGV+FDLGVSS Q+D +RGFSF K GP Sbjct: 67 I---DDPRFTIVHGPFSGIAEYAARYELVGKVDGVLFDLGVSSPQLDDAERGFSFMKDGP 123 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---PFQTT 188 LDMRM SG+ S + QA++ D+T ++ GE+K A RIA AIV R++ P T Sbjct: 124 LDMRMDPTSGMPVSAWLAQADLDDITWVIREFGEDKHARRIAKAIVAYRENEENEPLTRT 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ LI S + HPATR+FQA RI++N+E+EE+ L+ A L G L V+ Sbjct: 184 SQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAASILAPQGRLSVI 243 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVVVPTQEDVAFNR 304 SFHSLEDR+VK+F S + + K + P++ +VA N Sbjct: 244 SFHSLEDRMVKRFMRKESKGPEVPHGIPLTQEQIRALGSADLRTVGKAIKPSEHEVAMNP 303 Query: 305 RSRSAKLRAGMR 316 RSRS+ LR + Sbjct: 304 RSRSSVLRIAEK 315 >gi|293381714|ref|ZP_06627695.1| S-adenosyl-methyltransferase MraW [Lactobacillus crispatus 214-1] gi|290921761|gb|EFD98782.1| S-adenosyl-methyltransferase MraW [Lactobacillus crispatus 214-1] Length = 315 Score = 360 bits (925), Expect = 1e-97, Method: Composition-based stats. Identities = 105/311 (33%), Positives = 161/311 (51%), Gaps = 13/311 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76 H VLL + I L P G + +DATFG GG ++ ++ D+D +A+ + Sbjct: 4 KHTSVLLHETIDNLKPKNGGLYVDATFGGGGDAKYLLSKIDTGTLVGFDQDEYAIKSAKL 63 Query: 77 TMR-----DYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSF 127 D + + L FS L+ + G+DG+ +DLGVSS Q D DRGFS+ Sbjct: 64 NFANLLQLDSEPRLELVHDNFSNLEKDLVKLGYSDGIDGIYYDLGVSSPQFDQADRGFSY 123 Query: 128 QKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + LDMRM S + A +VN + K+L IL G+EK + +IAH IV+RR+ P Sbjct: 124 RYDARLDMRMDQSQDLDAYQLVNTLSQKELADILYQYGDEKFSRQIAHRIVERRREKPIA 183 Query: 187 TTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT +L +I+ + ++ HPA +SFQALR+ VN+E++ L L A K L+ GG + Sbjct: 184 TTFELVDVIKDAIPAYARRTGGHPAKKSFQALRVAVNHELDVLQASLEEAIKILRPGGRI 243 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V++F S ED++VK+ F S + + + + K +V + ++ N R Sbjct: 244 SVITFQSHEDKIVKRIFKKYSEVEVPRGMPFIPDGMKPTLRLVNHKPIVASTSELENNNR 303 Query: 306 SRSAKLRAGMR 316 S SAKLR + Sbjct: 304 SHSAKLRVAEK 314 >gi|328471991|gb|EGF42868.1| 16S rRNA m(4)C1402 methyltranserfase [Vibrio parahaemolyticus 10329] Length = 316 Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 116/316 (36%), Positives = 170/316 (53%), Gaps = 18/316 (5%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72 H+ VLL + I L P + +D TFG GG+SR+ + ++DRDP A++ Sbjct: 3 ETFQHISVLLNESIDGLAIKPDGIYIDGTFGRGGHSRTILSKLGPNGRLYSIDRDPQAIA 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + +F++ FS + Y + VDGV+ DLGVSS Q+D +RGFSF Sbjct: 63 EAGKI---DDPRFTIIHGPFSGMAQYAEEYDLVGKVDGVLLDLGVSSPQLDDAERGFSFM 119 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---P 184 K GPLDMRM SGI S + +A++ D+T ++ GE+K A RIA AIV+ R++ P Sbjct: 120 KDGPLDMRMDPTSGIPVSQWLMEADLDDITWVIREFGEDKHARRIARAIVEYRENEENEP 179 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 T L+ LI + S + HPATR+FQA RI++N+E+EE+ L+ A + L G Sbjct: 180 MVRTGQLAKLISEAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAARILAPEGR 239 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT----KKVVVPTQEDV 300 L V+SFHSLEDR+VK+F S + + A S K + P++ ++ Sbjct: 240 LSVISFHSLEDRMVKRFIRKESKGPEVPHGIPLTEAQIKELGSANMKTVGKAIKPSKHEI 299 Query: 301 AFNRRSRSAKLRAGMR 316 N RSRS+ LR + Sbjct: 300 DMNPRSRSSVLRIAEK 315 >gi|311693447|gb|ADP96320.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [marine bacterium HP15] Length = 327 Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 121/319 (37%), Positives = 178/319 (55%), Gaps = 12/319 (3%) Query: 9 MSSAIHHTIG---DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVI 62 M++ + G H VLL+ + L P +D TFG GG+SR ++ Sbjct: 1 MTTDRNQEAGAAYSHRSVLLDSAVDYLVNDPDGYYVDGTFGRGGHSRLILGRLGPSARLL 60 Query: 63 ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQID 119 +D+DP A+ +E + +F F +F++L V +G V+GV+ DLGVSS Q+D Sbjct: 61 GIDKDPEAIRAAKE-LEAQDNRFHSFHGSFAELGAAVVGQGWQTVNGVLLDLGVSSPQLD 119 Query: 120 CGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178 RGFSF + GPLDMRM+ SA++ + A+ D+ ++ GEEK + RIA +V+ Sbjct: 120 DASRGFSFMRDGPLDMRMNTEQSPSAAEWLATADESDIANVIFRYGEEKFSRRIARLLVE 179 Query: 179 RRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 RRQ AP +TT+ L+ L+ + V K HPATR+FQA+RIF+N E+E+L GL+SA Sbjct: 180 RRQEAPVETTRQLAELVSEAVP-KKEKHKHPATRTFQAIRIFINRELEDLEVGLQSAVDH 238 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L GG L+V+SFHSLEDRLVK+F + + + + A + K E Sbjct: 239 LAPGGRLVVISFHSLEDRLVKRFMRDLARGPQLPKGVPVTAEQEASDFRLVGKASKAGAE 298 Query: 299 DVAFNRRSRSAKLRAGMRT 317 +V+ N R+RSA +R RT Sbjct: 299 EVSDNVRARSAVMRVLERT 317 >gi|317504120|ref|ZP_07962122.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Prevotella salivae DSM 15606] gi|315664792|gb|EFV04457.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Prevotella salivae DSM 15606] Length = 316 Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 111/312 (35%), Positives = 169/312 (54%), Gaps = 17/312 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA------ 70 HVPVLL++ + LN G V +D TFG GG+S +++ + D+D A Sbjct: 9 HVPVLLKESVDGLNIQSGGVYVDVTFGGGGHSSEILSRLDEQAHLYSFDQDADAEQNVMR 68 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSF 127 G E +F+ ++ F L++++ GV DG++ DLGVSS D RGFSF Sbjct: 69 SEVGAERRFVDDSRFTFVRSNFRYLKNWMRYYGVESIDGLLADLGVSSHHFDDESRGFSF 128 Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + LDMRM+ +G +A+D+VN + + L + + GE KQ+ R+A A+VK R Sbjct: 129 RFDAQLDMRMNKRAGKTAADIVNDYDEEALANLFYLYGEIKQSRRLAAAVVKARSQQHIA 188 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 TTQDL +++ F + + FQALRI VN+E++ L + L+SA + LK GG L Sbjct: 189 TTQDLLGILEPI--FKREREKKDLAKVFQALRIEVNHEMDALKEMLKSATELLKPGGRLS 246 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+++HSLEDR+VK + + + ++ P F I KV+VP++ + N RS Sbjct: 247 VITYHSLEDRIVKNIMKTGNVEGKRIQDFYGRIETP--FTLINNKVIVPSENEQQENPRS 304 Query: 307 RSAKLRAGMRTV 318 RSAKLR + Sbjct: 305 RSAKLRIAEKNE 316 >gi|282859045|ref|ZP_06268181.1| S-adenosyl-methyltransferase MraW [Prevotella bivia JCVIHMP010] gi|282588213|gb|EFB93382.1| S-adenosyl-methyltransferase MraW [Prevotella bivia JCVIHMP010] Length = 319 Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 111/312 (35%), Positives = 174/312 (55%), Gaps = 15/312 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFA---VSC 73 H+PVLL + I LN G + +D TFG GG+S G ++ + D+D A ++ Sbjct: 9 HIPVLLNESIEGLNIHTGGIYVDVTFGGGGHSGEILSRLPVGCHLYSFDQDLDAEQNLNH 68 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130 E ++ ++F+ ++ F L++++ GV DG++ DLGVSS D RGFSF+ Sbjct: 69 LTEKSKELNDKFTFVRSNFRYLKNWMRYYGVEKIDGLLADLGVSSHHFDDETRGFSFRFE 128 Query: 131 -GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM+ + +AS+++N+ DL + + GE KQ+ RIA AIVK R + +TT Sbjct: 129 EAPLDMRMNKNAHKTASNILNEYEEDDLANLFYLYGELKQSRRIASAIVKARTNQTIKTT 188 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 D +++ ++ + + FQALRI VN+E+E L + L SA + L GG L V+ Sbjct: 189 TDFLKIVEPLFIRAREKK--DMAKLFQALRIEVNHEMEALKEMLASATELLSPGGRLSVI 246 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 ++HSLEDR+VK F + + + + P F+ + KV+V T+E++ N RSRS Sbjct: 247 TYHSLEDRIVKNFMKAGNAEGKVTQDFFGRIETP--FKLVNNKVIVATEEELEKNPRSRS 304 Query: 309 AKLRAGMRTVER 320 AKLR + E Sbjct: 305 AKLRIAEKKDEE 316 >gi|282850409|ref|ZP_06259788.1| S-adenosyl-methyltransferase MraW [Veillonella parvula ATCC 17745] gi|282579902|gb|EFB85306.1| S-adenosyl-methyltransferase MraW [Veillonella parvula ATCC 17745] Length = 310 Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 105/307 (34%), Positives = 164/307 (53%), Gaps = 10/307 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS---FCKMGSNVIALDRDPFAVSCGQ 75 +H VLL + + + P + +D T G G++ + +I LD+D A+S + Sbjct: 4 NHTSVLLRETVDSVVTNPKGIYVDCTLGGAGHAHAVGEMLDPEGMIIGLDQDEDALSVAR 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + D K Q FS L++ + + G VDG +FDLGVSS Q+D +RGFS+ GP Sbjct: 64 QRLSDLKCQVLTIPTNFSNLKEALQNAGIYEVDGFIFDLGVSSYQLDTPERGFSYMNDGP 123 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM ++A ++VN+ + + L +I+ GEE+ A RI IV+ RQ TT +L Sbjct: 124 LDMRMDKDAPLTAEEIVNEYDSEQLLQIIRDYGEERWAKRIVEFIVEARQEKRITTTGEL 183 Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+ + + + HPA R+FQA+RI VN E+ L A LK G + V++F Sbjct: 184 VRIIKNAIPAKARQDGPHPAKRTFQAIRIEVNRELAILHDSFVDAVSMLKPKGKIGVITF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+ K+ F S + + H AV ++ K + P+ ++ N R+RSA Sbjct: 244 HSLEDRITKQTFKELSTACICPPQLPVCVCNHKAVVKAKN-KAIEPSIGEIEVNPRARSA 302 Query: 310 KLRAGMR 316 KLR ++ Sbjct: 303 KLRVAVK 309 >gi|237724902|ref|ZP_04555383.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. D4] gi|265754710|ref|ZP_06089762.1| methylase MraW [Bacteroides sp. 3_1_33FAA] gi|229436640|gb|EEO46717.1| S-adenosyl-methyltransferase MraW [Bacteroides dorei 5_1_36/D4] gi|263234824|gb|EEZ20392.1| methylase MraW [Bacteroides sp. 3_1_33FAA] Length = 304 Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 110/304 (36%), Positives = 165/304 (54%), Gaps = 16/304 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 HVPVLL + + +N PG + +DATFG GG+S+ +++ + D+D A Sbjct: 9 HVPVLLNESVDGMNIQPGGIYVDATFGGGGHSKEILSRLDSTAHLYSFDQDEDAEKNIVS 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +F+ ++ F L +++ V D ++ DLGVSS D +RGFSF+ G L Sbjct: 69 -----DSRFTFVRSNFRYLSNFLRYYDVEEVDAILADLGVSSHHFDDSERGFSFRFEGKL 123 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +GI+A+DVVN + + L I + GE K + ++A IVK R T D Sbjct: 124 DMRMNKRAGITAADVVNTYDEERLANIFYLYGELKNSRKLASTIVKARGVKQIVTIGDFL 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ F + + FQALRI VN E+E L + L +A KALK GG L+V+++HS Sbjct: 184 EVIKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLYAATKALKPGGRLVVITYHS 241 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK + + + A + + P F+ + KV+V E+V N RSRSAKLR Sbjct: 242 LEDRMVKNIMKTGNIEGKAEQDFFGNVQTP--FKLVNSKVIVAGNEEVTCNPRSRSAKLR 299 Query: 313 AGMR 316 + Sbjct: 300 IAEK 303 >gi|260773502|ref|ZP_05882418.1| S-adenosyl-methyltransferase MraW [Vibrio metschnikovii CIP 69.14] gi|260612641|gb|EEX37844.1| S-adenosyl-methyltransferase MraW [Vibrio metschnikovii CIP 69.14] Length = 316 Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 123/314 (39%), Positives = 172/314 (54%), Gaps = 22/314 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 HV VLL + I L P + +D TFG GG+SR+ + ++DRDP A++ + Sbjct: 7 HVSVLLHESIDGLAIKPDGIYIDGTFGRGGHSRTILAQLGPEGRLYSIDRDPQAIAEASK 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +F++ FS + +Y VDGV+FDLGVSS Q+D +RGFSF K GP Sbjct: 67 I---DDPRFTIIHGPFSGIAEYAQRYNLQGQVDGVLFDLGVSSPQLDDAERGFSFMKDGP 123 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS---APFQTT 188 LDMRM SG+S + + A + D+T ++ GE+K A RIA AIV R + P T Sbjct: 124 LDMRMDPNSGVSVAQWLLTAELDDITWVIREFGEDKHARRIAKAIVAHRDNPDNEPLTRT 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ LI + S + HPATR+FQA RI++N+E+EE+ L+ A L G L V+ Sbjct: 184 SQLAKLISEAAPKSFKEKKHPATRTFQAFRIYINSELEEIDIALQGAASILAPQGRLSVI 243 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHP------AVFQSITKKVVVPTQEDVAF 302 SFHSLEDR+VK+F S K V H +P A ++I K + P+ +VA Sbjct: 244 SFHSLEDRMVKRFIRKES-KGPDVPHGLPLTQDQIKALGSAKLKAI-GKAIKPSDHEVAL 301 Query: 303 NRRSRSAKLRAGMR 316 N RSRS+ LR + Sbjct: 302 NPRSRSSVLRIAEK 315 >gi|167764163|ref|ZP_02436290.1| hypothetical protein BACSTE_02547 [Bacteroides stercoris ATCC 43183] gi|167698279|gb|EDS14858.1| hypothetical protein BACSTE_02547 [Bacteroides stercoris ATCC 43183] Length = 303 Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 107/311 (34%), Positives = 163/311 (52%), Gaps = 16/311 (5%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69 + H+PVLL + +N P +D TFG GG+SR G ++ D+D Sbjct: 1 MKEETTYHIPVLLMPSVDGMNIRPDGTYVDVTFGGGGHSREILSRLGDGGRLLGFDQDED 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFS 126 A E F+ ++ F L +++ G VD V+ DLGVSS D +RGFS Sbjct: 61 A-----ERNIVNDPHFTFVRSNFRYLHNFLRYHGIEQVDAVLADLGVSSHHFDDSERGFS 115 Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 F+ G LDMRM+ +G++A+D+VN + + L I + GE K + ++A IVK R Sbjct: 116 FRFDGALDMRMNKRAGLTAADIVNTYDEERLADIFYLYGELKNSRKLASVIVKARAVQKI 175 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 T + +I+ F + + FQALRI VN E+E L + L +A +ALK GG L Sbjct: 176 GTIGEFLEIIKPL--FGREREKKELAKVFQALRIEVNREMEALKEMLYAATEALKPGGRL 233 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 +V+++HSLEDR+VK + + + A + + P F+ + KV+VP +++ N R Sbjct: 234 VVITYHSLEDRMVKNIMKTGNIEGKAEKDFFGNVQTP--FRLVNNKVIVPDNDEIERNPR 291 Query: 306 SRSAKLRAGMR 316 SRSAKLR + Sbjct: 292 SRSAKLRIAEK 302 >gi|237709504|ref|ZP_04539985.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 9_1_42FAA] gi|229456560|gb|EEO62281.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 9_1_42FAA] Length = 304 Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 108/304 (35%), Positives = 165/304 (54%), Gaps = 16/304 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H+PVLL + + +N PG + +DATFG GG+S+ +++ + D+D A Sbjct: 9 HIPVLLNESVDGMNIQPGGIYVDATFGGGGHSKEILSRLDSTAHLYSFDQDEDAEKNIVS 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +F+ ++ F L +++ V D ++ DLGVSS D +RGFSF+ G L Sbjct: 69 -----DSRFTFVRSNFRYLSNFLRYYDVEEVDAILADLGVSSHHFDDSERGFSFRFEGKL 123 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +G++A+DVVN + + L I + GE K + ++A IVK R T D Sbjct: 124 DMRMNKRAGMTAADVVNTYDEERLANIFYLYGELKNSRKLASTIVKARGVKQIITIGDFL 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ F + + FQALRI VN E+E L + L +A KALK GG L+V+++HS Sbjct: 184 EVIKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLYAATKALKPGGRLVVITYHS 241 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK + + + A + + P F+ + KV+V E+V N RSRSAKLR Sbjct: 242 LEDRMVKNIMKTGNIEGKAEQDFFGNVQTP--FKLVNSKVIVAGNEEVTCNPRSRSAKLR 299 Query: 313 AGMR 316 + Sbjct: 300 IAEK 303 >gi|291459281|ref|ZP_06598671.1| S-adenosyl-methyltransferase MraW [Oribacterium sp. oral taxon 078 str. F0262] gi|291418535|gb|EFE92254.1| S-adenosyl-methyltransferase MraW [Oribacterium sp. oral taxon 078 str. F0262] Length = 308 Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 108/305 (35%), Positives = 165/305 (54%), Gaps = 9/305 (2%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRD 80 LL + I L V +D T G GG++ S C+ +I +D+D A+ E ++D Sbjct: 2 LLRETIEGLAIRADGVYVDGTLGGGGHALSICERLSGRGRLIGIDQDGAAIEAASERLKD 61 Query: 81 YKEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 Y+++ + + + + + + + VDG+ DLGVSS Q+D G+RGFS++ LDMRM Sbjct: 62 YRDRAVIVRGNYEDIAEILMRLQIERVDGICLDLGVSSYQLDEGERGFSYRTDAALDMRM 121 Query: 138 SCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 G +A+D+VN + + L RI+ GE+ A IA IV+ R+ +TT +LS +I Sbjct: 122 DQRGERTAADIVNSYSEEALFRIIRDYGEDHFARNIAKHIVQYREKKRIETTLELSGIIS 181 Query: 197 KTVYFSKNN-RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + HPA RSFQA+RI +N E+E L L L GG L V+SFHSLED Sbjct: 182 GAIPARVRALSGHPAKRSFQAIRIELNRELEVLENTLDRMIDLLSEGGRLCVISFHSLED 241 Query: 256 RLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 R+VK F + + + S + +TKK ++P++E++ NRRS+SAKLR Sbjct: 242 RIVKSKFRTAEKPCICPPDFPVCSCGRKSRGIVLTKKPILPSEEELLENRRSQSAKLRIF 301 Query: 315 MRTVE 319 + E Sbjct: 302 EKRTE 306 >gi|325478632|gb|EGC81744.1| S-adenosyl-methyltransferase MraW [Anaerococcus prevotii ACS-065-V-Col13] Length = 306 Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 106/307 (34%), Positives = 167/307 (54%), Gaps = 12/307 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 +H+PV+ + I LN V LD T G GG+S+ + S+ +IALD+D A+ + Sbjct: 4 EHIPVIATETIENLNIKSDGVYLDLTLGKGGHSKMILERLSDEGTLIALDQDKEAIEAAK 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E ++D+ + F ++ + + D G +DG + D+GVSS QID DRGFS+ K GP Sbjct: 64 ENLKDF-SNVIFINSNFEKIDEVLRDLGFDYIDGALMDIGVSSYQIDNADRGFSYMKDGP 122 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ + ++A +VN+ + +L +I GEEK + IA I+K R+ TT L Sbjct: 123 LDMRMNQENELTAEIIVNEYSQDELEKIFFEYGEEKFSKLIAKNIIKAREDYRIDTTFKL 182 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++ K++ K+N HP R FQALRI VN E++ L + L L +++FH Sbjct: 183 KDIVTKSI---KSNEAHPEKRVFQALRIEVNRELDVLKDTIDKVVDHLNKDERLAIITFH 239 Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK F + + + H A + IT+K + +++++ N R++ AK Sbjct: 240 SLEDRIVKNKFKDLATDCICPPEFPVCVCNHKAKVKIITRKPITASKKELKENSRAKPAK 299 Query: 311 LRAGMRT 317 LR R Sbjct: 300 LRVCQRI 306 >gi|325205481|gb|ADZ00934.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis M04-240196] Length = 328 Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 118/323 (36%), Positives = 174/323 (53%), Gaps = 13/323 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 MS A + H+ VLL + + L V +D TFG GG+SR +I D Sbjct: 1 MSGAESY---RHITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFD 57 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGD 122 +DP A++ +E + ++ + F+ Q + G VDG +FDLG+SS QID G Sbjct: 58 KDPQAIAVAEE-LARSDKRVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGS 116 Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF+ PLDMRM + G+SA++ + A+ +DL ++ GEE+ + +IA AIV +R Sbjct: 117 RGFSFRFDAPLDMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRA 176 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 +P TT+ L+ ++ + V + + PATR+FQA+RIF+N E+EE+ L LK Sbjct: 177 ESPIDTTRKLAQIVAQNVRTRERGQ-DPATRTFQAIRIFINRELEEVGAVLPQVMCRLKE 235 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDV 300 GG L V++FHSLEDR+VK+F S R A P I + + P + ++ Sbjct: 236 GGRLAVIAFHSLEDRIVKQFVKKYSQHAPLPRWAAVREADLPEPPLKIVGRALKPGEAEI 295 Query: 301 AFNRRSRSAKLRAGMRTVERSIE 323 A N R+RSA LR RT E Sbjct: 296 AANPRARSAVLRVAERTAGPIPE 318 >gi|322834428|ref|YP_004214455.1| S-adenosyl-methyltransferase MraW [Rahnella sp. Y9602] gi|321169629|gb|ADW75328.1| S-adenosyl-methyltransferase MraW [Rahnella sp. Y9602] Length = 313 Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 123/314 (39%), Positives = 181/314 (57%), Gaps = 19/314 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H VLL++ + LN + +D TFG GG+SR ++A+DRDP A+ + Sbjct: 6 KHTSVLLDEAVNGLNIRQDGIYIDGTFGRGGHSRLILSQLGPDGRLLAIDRDPQAIKAAE 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +FS+ FS L DYV D+G +DGV+ DLGVSS Q+D +RGFSF + G Sbjct: 66 SI---DDPRFSIVHGPFSDLADYVRDRGLEGKIDGVLLDLGVSSPQLDDPERGFSFMRDG 122 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + G SA++ + +A +D+ +L GEE+ A RIA AIV+R + P T++ Sbjct: 123 PLDMRMDPTRGYSATEWLMKAEAEDIAWVLKTFGEERFAKRIARAIVERNRELPMTRTKE 182 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ LI + ++ HPATRSFQA+RI++N+E+EE+ + L A + L G L V+SF Sbjct: 183 LADLIANASPVREKHK-HPATRSFQAIRIYINSELEEIERALDGALEILAPEGRLSVISF 241 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305 HSLEDR+VK+F S + + A A +S+ K ++P++ +VA N R Sbjct: 242 HSLEDRIVKRFIRQHSRGAQVPAGIPMTEAQIAELGGRSLKSVGK--MMPSEAEVAENPR 299 Query: 306 SRSAKLRAGMRTVE 319 +RS+ LR RT Sbjct: 300 ARSSVLRFAERTTA 313 >gi|123441024|ref|YP_001005013.1| S-adenosyl-methyltransferase MraW [Yersinia enterocolitica subsp. enterocolitica 8081] gi|263504660|sp|A1JJI5|RSMH_YERE8 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|122087985|emb|CAL10773.1| conserved hypothetical protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 320 Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 120/314 (38%), Positives = 176/314 (56%), Gaps = 19/314 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H VLL++ + LN + +D TFG GG+SR +IA+DRDP A+ + Sbjct: 13 KHTSVLLDEAVNGLNIRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDRDPQAIEAAK 72 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +FS+ FS L YV + ++GV+ DLGVSS Q+D +RGFSF + G Sbjct: 73 SI---TDPRFSIVHGPFSDLAHYVRELNLVGRINGVLLDLGVSSPQLDDPERGFSFMRDG 129 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + GISA++ + +A+ D+ +L GEE+ A R+A AIV+R + P T++ Sbjct: 130 PLDMRMDPTRGISAAEWLMKASADDIAWVLKTFGEERFAKRLAKAIVERNLTQPMTRTKE 189 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ LI F + ++ HPATRSFQA+RI++N+E+EE+ + L A + L G L V+SF Sbjct: 190 LADLIANASPFREKHK-HPATRSFQAIRIYINSELEEIERALDGALEVLAPEGRLSVISF 248 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNRR 305 HSLEDR+VK F S + + A +S+ K ++P +VA N R Sbjct: 249 HSLEDRIVKNFIRHHSRGPQVPAGLPLTEAQLRSMGGRTLKSVGK--MMPPDAEVAENPR 306 Query: 306 SRSAKLRAGMRTVE 319 +RS+ LR R E Sbjct: 307 ARSSVLRFAERIKE 320 >gi|332557530|ref|ZP_08411852.1| 16S rRNA m(4)C1402 methyltranserfase [Rhodobacter sphaeroides WS8N] gi|332275242|gb|EGJ20557.1| 16S rRNA m(4)C1402 methyltranserfase [Rhodobacter sphaeroides WS8N] Length = 331 Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 144/331 (43%), Positives = 200/331 (60%), Gaps = 5/331 (1%) Query: 11 SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPF 69 + H+PVLL ++A + P LD TFGAGGY+R + G+ VI +DRDP Sbjct: 2 AEADTERRPHIPVLLRPLLAAVAPVE-GTWLDGTFGAGGYARGLLEAGADRVIGVDRDPL 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 A+ DY ++ L TFSQL + +DGVV DLGVSSMQ+D +RGFSFQK Sbjct: 61 ALKMASGWAGDYGDRLRLVAGTFSQLDSHAGAP-LDGVVLDLGVSSMQLDLAERGFSFQK 119 Query: 130 SGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 GPLDMRMS G SA+D+VN A+ + L IL GEE+ + RIA AIV+ R +AP T Sbjct: 120 DGPLDMRMSQEGESAADLVNTASEETLADILYHYGEERASRRIARAIVEARAAAPITRTL 179 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ ++ + + K ++HPATRSFQA+RI VN E EL +GL +AE+AL+ GG L VV+ Sbjct: 180 ALAEIVARCLPRPKPGQMHPATRSFQAIRIAVNAEFSELVEGLEAAERALRHGGRLAVVT 239 Query: 250 FHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK+F RS G+ R+ + A F ++ + P + ++A N R+RS Sbjct: 240 FHSLEDRIVKRFLQLRSGGEGQGNRYAPETRADAPRFTLPLRRAISPDEAELAENPRARS 299 Query: 309 AKLRAGMRTVERSIE-DDSFVHLPRLPTLSQ 338 A+LR G+RT + + D + P +P + Sbjct: 300 ARLRVGVRTDAPAGKVDPQALGTPLIPKKGR 330 >gi|46199019|ref|YP_004686.1| mraW protein [Thermus thermophilus HB27] gi|85701363|sp|P62476|RSMH_THET2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|46196643|gb|AAS81059.1| mraW protein [Thermus thermophilus HB27] Length = 285 Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 125/300 (41%), Positives = 180/300 (60%), Gaps = 26/300 (8%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 HVPVL ++ + LL PG V +DAT G G++R + G VI LD+DP AV+ + Sbjct: 6 HVPVLYQEALDLLAVRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKGL-- 63 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + ++ Q F L+ ++ GV DG++ DLGVSS +D RGFS+QK GPLDMR Sbjct: 64 -HLPGLTVVQGNFRHLKRHLAALGVERVDGILADLGVSSFHLDDPSRGFSYQKEGPLDMR 122 Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 M G +A +VVN+ ++ L R+L LGEE QA RIA AIV R+ AP +TT L+ +++ Sbjct: 123 MGLEGPTAKEVVNRLPLEALARLLRELGEEPQAYRIARAIVAAREKAPIETTTQLAEIVR 182 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 K V F + HPA ++FQALRI+VN+E+ L + L A + L G L+V++FHSLEDR Sbjct: 183 KAVGFRRAG--HPARKTFQALRIYVNDELNALKEFLEQAAEVLAPRGRLVVIAFHSLEDR 240 Query: 257 LVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 +VK+F + + +TKK +VP++++ A N R+RSAKLRA + Sbjct: 241 VVKRFLRE------------------SGLKVLTKKPLVPSEKEAAQNPRARSAKLRAAEK 282 >gi|294788560|ref|ZP_06753802.1| S-adenosyl-methyltransferase MraW [Simonsiella muelleri ATCC 29453] gi|294483437|gb|EFG31122.1| S-adenosyl-methyltransferase MraW [Simonsiella muelleri ATCC 29453] Length = 320 Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 111/313 (35%), Positives = 168/313 (53%), Gaps = 11/313 (3%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFA 70 + H+ VLL + + LN V +D TFG GG+SR +I D+DP A Sbjct: 3 QPSEFKHITVLLHEAVDALNIRADGVYVDGTFGRGGHSRLILSRLGESGRLIVFDKDPQA 62 Query: 71 VSCGQETMRDYKEQFSLFQATFSQ----LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126 + QE + ++ + FS L++ + +DG +FDLG+SS QID RGFS Sbjct: 63 IEVAQE-LAKQDKRVKVIHNGFSHFQVALKNDLGLNHIDGALFDLGISSPQIDDASRGFS 121 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 F+ PLDMRM + G SA+D + A+ +++ ++ GEE+ + +IA AIV +R+ +P Sbjct: 122 FRFDAPLDMRMDTTRGQSAADWLAIADEQEIHEVIKNYGEERFSRQIARAIVTQREDSPI 181 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT L+ + + V + + PATR+FQA+RIF+N E++E+ L L GG L Sbjct: 182 ITTNQLAKITAQVVRTRERGQ-DPATRTFQAIRIFINRELDEIQAVLPQVVAHLNIGGRL 240 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 V++FHSLEDRLVK+F + S + I P K + P+ +++A N Sbjct: 241 AVIAFHSLEDRLVKQFIRTHSTHAPLPKWAAIRETDLPQPPLLAVGKAIKPSDDEIAHNP 300 Query: 305 RSRSAKLRAGMRT 317 R+RSA LR RT Sbjct: 301 RARSAVLRIAERT 313 >gi|209559798|ref|YP_002286270.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes NZ131] gi|262827234|sp|B5XML3|RSMH_STRPZ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|209540999|gb|ACI61575.1| S-adenosyl-methyltransferase mraW [Streptococcus pyogenes NZ131] Length = 316 Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 102/320 (31%), Positives = 168/320 (52%), Gaps = 15/320 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 M+ H HV VLL + + +L+ P + +DAT G G+S ++ D Sbjct: 1 MTKEFH-----HVTVLLHETVDMLDIKPDGIYVDATLGGSGHSAYLLSKLGEEGHLYCFD 55 Query: 66 RDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDC 120 +D A+ Q T++ Y K Q + + F L+ + GVD G+++DLGVSS Q+D Sbjct: 56 QDQKAIDNAQVTLKSYIDKGQVTFIKDNFRHLKARLTALGVDEIDGILYDLGVSSPQLDE 115 Query: 121 GDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS+++ PLDMRM + +A +VVN DL +I GE+K + +IA I + Sbjct: 116 RERGFSYKQDAPLDMRMDRQSLLTAYEVVNTYPFNDLVKIFFKYGEDKFSKQIARKIEQA 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R P + T +L+ LI+ + + HPA + FQA+RI VN+E+ + ++ A + Sbjct: 176 RAIKPIEATTELAELIKAAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQDAMEL 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L G + V++FHSLEDRL K+ F S + + F+ +++K ++P+ Sbjct: 236 LALDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPLIPEDMKPKFELVSRKPILPSHS 295 Query: 299 DVAFNRRSRSAKLRAGMRTV 318 ++ N+R+ SAKLR + Sbjct: 296 ELTANKRAHSAKLRVAKKIR 315 >gi|120597213|ref|YP_961787.1| S-adenosyl-methyltransferase MraW [Shewanella sp. W3-18-1] gi|146291586|ref|YP_001182010.1| S-adenosyl-methyltransferase MraW [Shewanella putrefaciens CN-32] gi|262826531|sp|A4Y2M8|RSMH_SHEPC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262826576|sp|A1REY8|RSMH_SHESW RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|120557306|gb|ABM23233.1| S-adenosyl-methyltransferase MraW [Shewanella sp. W3-18-1] gi|145563276|gb|ABP74211.1| S-adenosyl-methyltransferase MraW [Shewanella putrefaciens CN-32] Length = 313 Score = 360 bits (924), Expect = 2e-97, Method: Composition-based stats. Identities = 116/307 (37%), Positives = 170/307 (55%), Gaps = 13/307 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H+ VLL + + LN + +D TFG GG+SR + +IA+DRDP A+ ++ Sbjct: 7 HLSVLLAETVGGLNIKDDGIYIDGTFGRGGHSRQILQRLGDNGRLIAIDRDPQAIEAAKQ 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 D +F + F QL DYV D G +DGV+ DLGVSS Q+D +RGFSF + GP Sbjct: 67 FSDD--PRFQIVHGGFGQLADYVEDLGLVGKIDGVLLDLGVSSPQLDDAERGFSFLRDGP 124 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G +A+ + A ++D+ + GEEK A IA I R PF T+DL Sbjct: 125 LDMRMDNSQGQTAAQWLAHAEIEDMAWVFKTYGEEKNARHIARCIAADRDKTPFLRTKDL 184 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI + + N+ HPATR FQA+RI++N+E++++ Q L A L G L ++SFH Sbjct: 185 ADLIARITKNKERNK-HPATRVFQAIRIYINSELDQIDQALEGALAVLAPQGRLSIISFH 243 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI--TKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK+F S + + + + K ++P+ E++ N R+RS+ Sbjct: 244 SLEDRIVKRFIRRHSQGESVPYGLPITEDQINKSRKLRAIGKAIMPSDEEIERNARARSS 303 Query: 310 KLRAGMR 316 LR R Sbjct: 304 VLRIAER 310 >gi|297194883|ref|ZP_06912281.1| S-adenosylmethionine-dependent methyltransferase [Streptomyces pristinaespiralis ATCC 25486] gi|297152504|gb|EFH31797.1| S-adenosylmethionine-dependent methyltransferase [Streptomyces pristinaespiralis ATCC 25486] Length = 318 Score = 360 bits (924), Expect = 2e-97, Method: Composition-based stats. Identities = 124/310 (40%), Positives = 183/310 (59%), Gaps = 10/310 (3%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 HVPV+L++ + +L PA PG V++D T G GG+S + + ++ALDRD A+ Sbjct: 6 HVPVMLQRCLDMLAPALRTPGGVVVDCTLGLGGHSEALLEQFPQTRLVALDRDTEALRLS 65 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E + + E+ +L A + +L D + G V GV+FDLGVSSMQ+D DRGF++ + Sbjct: 66 GERLARFGERATLVHAVYDELPDVLDRLGIPRVQGVLFDLGVSSMQLDEADRGFAYAQDA 125 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + G+SA++V+N +L RIL GEEKQA RI AIV+ R+ PF + Sbjct: 126 PLDMRMDQTTGMSAAEVLNTYPPGELVRILRAYGEEKQAKRIVSAIVREREKEPFTNSAR 185 Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L LI+ + +K +PA R+FQALRI VN E+ L + + +A AL GG + V+S Sbjct: 186 LVELIRDALPQAAKRTGGNPAKRTFQALRIEVNGELAVLERAVPAAVSALAVGGRIAVLS 245 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 +HSLEDRLVK+ FA+ + + + + +T+ +PT E++A NRR+ A Sbjct: 246 YHSLEDRLVKQVFAAGAANTAPPGLPVVPEQYQPRLKLLTRGAELPTDEEIAENRRAAPA 305 Query: 310 KLRAGMRTVE 319 +LR R E Sbjct: 306 RLRGAERIRE 315 >gi|254291793|ref|ZP_04962578.1| conserved hypothetical protein [Vibrio cholerae AM-19226] gi|150422305|gb|EDN14267.1| conserved hypothetical protein [Vibrio cholerae AM-19226] Length = 316 Score = 360 bits (924), Expect = 2e-97, Method: Composition-based stats. Identities = 120/323 (37%), Positives = 174/323 (53%), Gaps = 23/323 (7%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 M+++ H+ VLL + I L P + +D TFG GG+SR+ + ++D Sbjct: 1 MTASFQ-----HISVLLNESIEGLAIKPDGIYIDGTFGRGGHSRTILAQLGPEGRLYSID 55 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCG 121 RDP A++ Q+ +F++ FS + +Y VDGV+FDLGVSS Q+D Sbjct: 56 RDPQAIAEAQKI---DDPRFTIVHGPFSGIAEYAQRYDLVGKVDGVLFDLGVSSPQLDDA 112 Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF K GPLDMRM SG+ S + QA++ D+T ++ GE+K A RIA AIV+ R Sbjct: 113 ERGFSFMKDGPLDMRMDPTSGMPVSAWLAQADLDDITWVIREFGEDKHARRIAKAIVEYR 172 Query: 181 QSA---PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 ++ P T L+ LI S + HPATR+FQA RI++N+E+EE+ LR A Sbjct: 173 ENELNEPLTRTSQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALRGASD 232 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSIT-KKVV 293 L G L V+SFHSLEDR+VK+F S + + + T K + Sbjct: 233 ILAPQGRLSVISFHSLEDRMVKRFMRKESLGPEVPHGLPLTQEQIRALGSAKMKTVGKAL 292 Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316 P+ ++V N RSRS+ LR + Sbjct: 293 KPSDQEVELNPRSRSSVLRVAEK 315 >gi|262831538|sp|Q1QNV1|RSMH_NITHX RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 332 Score = 360 bits (924), Expect = 2e-97, Method: Composition-based stats. Identities = 150/325 (46%), Positives = 201/325 (61%), Gaps = 7/325 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQETM 78 HVPVL + +A+L P G V +DATFGAGGYSR+ + VI +DRD A++ G + Sbjct: 8 HVPVLGREAVAMLAPRAGGVYVDATFGAGGYSRAILAVADTRVIGIDRDRSAIAGGFALV 67 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + + +L + FS L +G VDG+V D+GVSSMQ+D DRGFSF+ GPLDM Sbjct: 68 EESGGRLTLVEDRFSNLAAVCAAEGADVVDGIVMDVGVSSMQLDEADRGFSFRLDGPLDM 127 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RMS G +A+DVV +A+ DL I+ I GEE+++ +A AIV R+ AP TT+ L+ ++ Sbjct: 128 RMSGHGPTAADVVARASETDLANIIYIFGEERRSRAVARAIVAARRDAPVATTRALADIV 187 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 K V +K + IHPATR+FQALRIFVN E++EL L +AE+ L+ GG L VVSFHSLED Sbjct: 188 SKVV-RAKPHEIHPATRTFQALRIFVNEELDELIAALAAAERVLRPGGRLAVVSFHSLED 246 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 R+VK FFA R RH F +T++ V QE+V+ N R+RSAKLRA Sbjct: 247 RIVKNFFALRGKTGGGSRHRPEIERAAPSFAILTRRPVTAGQEEVSANPRARSAKLRAAE 306 Query: 316 RTVERSIEDDSFVHLPRLPTLSQFR 340 RT + DD P P+L+ Sbjct: 307 RTAAPATADDGES--PGWPSLANVM 329 >gi|254509146|ref|ZP_05121246.1| S-adenosyl-methyltransferase MraW [Vibrio parahaemolyticus 16] gi|219547943|gb|EED24968.1| S-adenosyl-methyltransferase MraW [Vibrio parahaemolyticus 16] Length = 316 Score = 360 bits (924), Expect = 2e-97, Method: Composition-based stats. Identities = 118/316 (37%), Positives = 169/316 (53%), Gaps = 18/316 (5%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72 H+ VLL + I L P + +D TFG GG+SR+ + ++DRDP A++ Sbjct: 3 EAFKHISVLLHESIDGLAIKPDGIYIDGTFGRGGHSRTILSQLGDNGRLYSIDRDPQAIA 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128 E + +F++ FS + +Y + G VDGV+ DLGVSS Q+D +RGFSF Sbjct: 63 ---EAAKIDDPRFTIIHGPFSGMAEYAAEYGLVGKVDGVLLDLGVSSPQLDDAERGFSFM 119 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---P 184 K GPLDMRM SGI S + +A++ D+T ++ GE+K A RIA AIV R++ P Sbjct: 120 KDGPLDMRMDPTSGIPVSQWLMEADLDDITWVIREFGEDKHARRIAKAIVAYRENEENEP 179 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 T L+ LI S + HPATR+FQA RI++N+E+EE+ L+ A L G Sbjct: 180 LTRTGQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAASILAPEGR 239 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV----VVPTQEDV 300 L V+SFHSLEDR+VK+F S + + S K + P++ +V Sbjct: 240 LSVISFHSLEDRMVKRFIRKESKGPEVPHGIPMTEEQIKALGSANMKPIGKAIKPSKNEV 299 Query: 301 AFNRRSRSAKLRAGMR 316 N RSRS+ LR + Sbjct: 300 EVNARSRSSVLRIAEK 315 >gi|302877570|ref|YP_003846134.1| S-adenosyl-methyltransferase MraW [Gallionella capsiferriformans ES-2] gi|302580359|gb|ADL54370.1| S-adenosyl-methyltransferase MraW [Gallionella capsiferriformans ES-2] Length = 311 Score = 360 bits (924), Expect = 2e-97, Method: Composition-based stats. Identities = 115/305 (37%), Positives = 168/305 (55%), Gaps = 12/305 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H VLL + + L P + LD TFG GG+S + +IALD+D AVS G E Sbjct: 7 HTTVLLAEAVEALAIKPDGIYLDCTFGRGGHSALILQQLGANGRLIALDKDMTAVSHGLE 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +F + + F+ L + + + GV DG++ DLGVSS Q+D RGFSF+ PL Sbjct: 67 W---QDARFKMVHSGFTHLAEVLRELGVERVDGILLDLGVSSPQLDEAARGFSFRFDAPL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S G +A+ + A+ LT ++ GEE+ A +IA AI+ R+ P QTT L Sbjct: 124 DMRMDNSRGPTAAQWLETADEGLLTEVIRDYGEERFAKQIARAIIVAREIQPIQTTGQLV 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 L+ KTV ++ +PATR+FQA+RI++N E+EEL Q L LK GG L V+SFHS Sbjct: 184 ELVGKTV-RTRETGKNPATRTFQAIRIYLNQELEELKQVLPQCVTHLKPGGRLAVISFHS 242 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK F + R++ + + + + + ++++ N R+RSA + Sbjct: 243 LEDRMVKHFIRDMNDADKLPRNVPIRASEVPKGKLNLIGRAIKAGKDELNSNPRARSAVM 302 Query: 312 RAGMR 316 R R Sbjct: 303 RVAER 307 >gi|283769659|ref|ZP_06342555.1| S-adenosyl-methyltransferase MraW [Bulleidia extructa W1219] gi|283103927|gb|EFC05313.1| S-adenosyl-methyltransferase MraW [Bulleidia extructa W1219] Length = 318 Score = 360 bits (924), Expect = 2e-97, Method: Composition-based stats. Identities = 109/313 (34%), Positives = 168/313 (53%), Gaps = 10/313 (3%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74 + +H+ VLLE+ + L P + +DAT G G+S K ++ + D+D A+ Sbjct: 1 MSEHISVLLEESLEALKILPEGIYVDATLGRAGHSVEILKKLTTGHLYSFDKDQQAIEEC 60 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++ Y E+ +L A FS++ + + GV DG++FDLGVSS Q D GDRGFS++ Sbjct: 61 SLKLKSYAEKVTLIHADFSKMMEKLQSLGVEKVDGILFDLGVSSPQFDQGDRGFSYRFEA 120 Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM S + A VVN + K+L I EE+ A IA+ I + R+ P +TT + Sbjct: 121 RLDMRMDQSQDLDAYQVVNHYSAKELKDIFLKYSEERYAPMIANKICEIRERKPIETTFE 180 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L ++++ + + + HPA + FQA+R+ VN+E+ L Q L A LK GG L V+S Sbjct: 181 LVNIVKSCLPAKELRKKKHPAKQVFQAIRMEVNDELGTLEQALNQACSLLKEGGRLAVIS 240 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 FHS+EDR+VK + + A F+ + KK ++ + ++ N R+ Sbjct: 241 FHSIEDRMVKTILKKHCEIEKPDPRLPIRFEDIQQADFRLVYKKPILAKEAELENNHRAH 300 Query: 308 SAKLRAGM-RTVE 319 SAKLR RT E Sbjct: 301 SAKLRVIEKRTKE 313 >gi|325134878|gb|EGC57511.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis M13399] Length = 328 Score = 360 bits (924), Expect = 2e-97, Method: Composition-based stats. Identities = 118/323 (36%), Positives = 175/323 (54%), Gaps = 13/323 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 MS A + H+ VLL + + L V +D TFG GG+SR +I D Sbjct: 1 MSGAESY---RHITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFD 57 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGD 122 +DP A++ +E + ++ + F+ Q + G VDG +FDLG+SS QID G Sbjct: 58 KDPQAIAVAEE-LARSDKRVGVVHGGFASFQAALDGLGIGKVDGALFDLGISSPQIDDGS 116 Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF+ PLDMRM + G+SA++ + A+ +DL ++ GEE+ + +IA AIV +R Sbjct: 117 RGFSFRFDAPLDMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRA 176 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 +P TT+ L+ ++ + V + + PATR+FQA+RIF+N E+EE+ L LK Sbjct: 177 ESPIDTTRKLAQIVAQNVRTRERGQ-DPATRTFQAIRIFINRELEEVGAVLPQVMCRLKE 235 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDV 300 GG L V++FHSLEDR+VK+F S R A P + I + + P + ++ Sbjct: 236 GGRLAVIAFHSLEDRIVKQFVKKYSQHAPLPRWAAVREADLPELPLKIVGRALKPGEAEI 295 Query: 301 AFNRRSRSAKLRAGMRTVERSIE 323 A N R+RSA LR RT E Sbjct: 296 AANPRARSAVLRVAERTAGPIPE 318 >gi|84686327|ref|ZP_01014221.1| methyltransferase MraW/YabC [Maritimibacter alkaliphilus HTCC2654] gi|84665510|gb|EAQ11986.1| methyltransferase MraW/YabC [Rhodobacterales bacterium HTCC2654] Length = 330 Score = 360 bits (924), Expect = 2e-97, Method: Composition-based stats. Identities = 139/326 (42%), Positives = 196/326 (60%), Gaps = 5/326 (1%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRD 67 M A H+PVLL ++ + P V +D TFGAG Y+R + G+ VI +DRD Sbjct: 1 MMVAAAARPSPHIPVLLRPLLETVAPVS-GVWIDGTFGAGSYARGLVEAGAETVIGIDRD 59 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 P A + + DY + L + TFS + + D VDGVV DLGVSSMQ+D +RGFSF Sbjct: 60 PLAHEMAEGWLADYDGRIRLERGTFSDMDEIAGDP-VDGVVLDLGVSSMQLDLAERGFSF 118 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRMS G +A+D+VN+A ++L IL GEE+ + RIA IV+ R++ F+T Sbjct: 119 MRDGPLDMRMSQEGPTAADLVNEAPEEELADILYHYGEERASRRIARQIVRAREAESFKT 178 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T L+ ++K + K + HPATRSFQA+RI VN+E +LA+GL +AE+ALK GG L V Sbjct: 179 TAQLAETVEKCLPRPKPGQSHPATRSFQAIRIAVNDEFGQLAEGLEAAERALKPGGKLAV 238 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+FHSLEDR+VK+F + P + H F ++ + P +E++A N R+ Sbjct: 239 VTFHSLEDRVVKRFLQLAASTGGGGSRYAPAAEDHTPRFDLTPRRAIAPDEEELAENPRA 298 Query: 307 RSAKLRAGMRTVERS-IEDDSFVHLP 331 RS++LR RT + D S + LP Sbjct: 299 RSSRLRVATRTDAPAERTDRSKLGLP 324 >gi|218768820|ref|YP_002343332.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis Z2491] gi|20139195|sp|Q9JSY9|RSMH_NEIMA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|121052828|emb|CAM09176.1| conserved hypothetical protein [Neisseria meningitidis Z2491] gi|308388613|gb|ADO30933.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis alpha710] gi|325130837|gb|EGC53570.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis OX99.30304] gi|325136978|gb|EGC59575.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis M0579] gi|325208773|gb|ADZ04225.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis NZ-05/33] Length = 328 Score = 360 bits (924), Expect = 2e-97, Method: Composition-based stats. Identities = 118/323 (36%), Positives = 174/323 (53%), Gaps = 13/323 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 MS A + H+ VLL + + L V +D TFG GG+SR +I D Sbjct: 1 MSGAESY---RHITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFD 57 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGD 122 +DP A++ +E + ++ + F+ Q + G VDG +FDLG+SS QID G Sbjct: 58 KDPQAIAVAEE-LARSDKRVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGS 116 Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF+ PLDMRM + G+SA++ + A+ +DL ++ GEE+ + +IA AIV +R Sbjct: 117 RGFSFRFDAPLDMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRA 176 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 +P TT+ L+ ++ + V + + PATR+FQA+RIF+N E+EE+ L LK Sbjct: 177 ESPIDTTRKLAQIVAQNVRTRERGQ-DPATRTFQAIRIFINRELEEVGAVLPQVMCRLKE 235 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDV 300 GG L V++FHSLEDR+VK+F S R A P I + + P + ++ Sbjct: 236 GGRLAVIAFHSLEDRIVKQFVKKYSQHAPLPRWAAVREADLPEPPLKIAGRALKPGEAEI 295 Query: 301 AFNRRSRSAKLRAGMRTVERSIE 323 A N R+RSA LR RT E Sbjct: 296 AANPRARSAVLRVAERTAGPIPE 318 >gi|120555371|ref|YP_959722.1| S-adenosyl-methyltransferase MraW [Marinobacter aquaeolei VT8] gi|263456394|sp|A1U3G6|RSMH_MARAV RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|120325220|gb|ABM19535.1| S-adenosyl-methyltransferase MraW [Marinobacter aquaeolei VT8] Length = 319 Score = 359 bits (923), Expect = 2e-97, Method: Composition-based stats. Identities = 112/318 (35%), Positives = 176/318 (55%), Gaps = 12/318 (3%) Query: 9 MSSAIHHTIGD---HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVI 62 M++ + H VLL+ + L +DATFG GG+SR G ++ Sbjct: 1 MTARQDDQANEGYQHRSVLLDAAVDYLVTDENGRYVDATFGRGGHSRLILGKLGQGGQLL 60 Query: 63 ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQID 119 +D+DP A++ +E + +F + +F++L + +G VDGV+ DLGVSS Q+D Sbjct: 61 GIDKDPEAIAVARE-LASGDSRFQWYHGSFAELDLALERQGWSQVDGVLMDLGVSSPQLD 119 Query: 120 CGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178 RGFSF + GPLDMRM+ SA+ + +A+ +++ ++ GEE+ + RIA +V+ Sbjct: 120 DASRGFSFMRDGPLDMRMNPQQEPSAAQWLAEADEREIADVIWRYGEERFSRRIARLVVE 179 Query: 179 RRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 RRQ P +TT+ L+ L+ + V K HPATR+FQA+RIF+N E+E+L GL +A Sbjct: 180 RRQEQPIETTRQLAELVAEAVP-KKEKHKHPATRAFQAIRIFINRELEDLEAGLAAAVDR 238 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L GG L+V+SFHSLEDRLVK+F + + + + + K ++ Sbjct: 239 LAPGGRLVVISFHSLEDRLVKRFMRDLARGPKLPKGIPVTAEQEESGFQLIGKASKANEQ 298 Query: 299 DVAFNRRSRSAKLRAGMR 316 ++ N R+RSA +R R Sbjct: 299 EITENVRARSAVMRVLER 316 >gi|15676324|ref|NP_273460.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis MC58] gi|20139199|sp|Q9K0Z0|RSMH_NEIMB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|7225634|gb|AAF40850.1| conserved hypothetical protein [Neisseria meningitidis MC58] gi|325140926|gb|EGC63433.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis CU385] Length = 328 Score = 359 bits (923), Expect = 3e-97, Method: Composition-based stats. Identities = 119/323 (36%), Positives = 175/323 (54%), Gaps = 13/323 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 MS A + H+ VLL + + L V +D TFG GG+SR +I D Sbjct: 1 MSGAESY---RHITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFD 57 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGD 122 +DP A++ +E + ++ + F+ Q + G VDG +FDLG+SS QID G Sbjct: 58 KDPQAIAVAEE-LARSDKRVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGS 116 Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF+ PLDMRM + G+SA++ + A+ +DL ++ GEE+ + RIA AIV +R Sbjct: 117 RGFSFRFDAPLDMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRRIARAIVAQRA 176 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 +P TT+ L+ ++ + V + + PATR+FQA+RIF+N E+EE+ L LK Sbjct: 177 ESPIDTTRKLAQIVAQNVRTRERGQ-DPATRTFQAVRIFINRELEEVGAVLPQVMCRLKE 235 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDV 300 GG L V++FHSLEDR+VK+F S R A P + I + + P + ++ Sbjct: 236 GGRLAVIAFHSLEDRIVKQFVKKYSQHAPLPRWAAVREADLPELPLKIVGRALKPGEAEI 295 Query: 301 AFNRRSRSAKLRAGMRTVERSIE 323 A N R+RSA LR RT E Sbjct: 296 AANPRARSAVLRVAERTAGPIPE 318 >gi|71898210|ref|ZP_00680384.1| methyltransferase [Xylella fastidiosa Ann-1] gi|71731949|gb|EAO34006.1| methyltransferase [Xylella fastidiosa Ann-1] Length = 340 Score = 359 bits (923), Expect = 3e-97, Method: Composition-based stats. Identities = 116/310 (37%), Positives = 171/310 (55%), Gaps = 10/310 (3%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAV 71 H HVPVL + + L LD TFG GG++R + G ++ +D+DP A+ Sbjct: 25 HLSMTHVPVLYTQAMEGLRVVENGTYLDGTFGRGGHARGVLQQLGPGGRLLVMDKDPEAI 84 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + E + + +F+ L + +DGV+FDLGVSS Q+D +RGFSF K G Sbjct: 85 AMA-ERAFSCDPRVVIRHGSFALLAQLAAPQSLDGVLFDLGVSSPQLDVPERGFSFAKDG 143 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM G SA+ + + + +++ +L GEEKQ+ RIA AIV R + P T Sbjct: 144 PLDMRMDPEMGESAAQWLARVSEREIADVLWTYGEEKQSRRIARAIVAYRANQPLLRTVQ 203 Query: 191 LSSLIQKTVYFSK----NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 L+ LI + +K +RIHPATRSFQ +RI VN E+ +L GL +A AL+ GG L+ Sbjct: 204 LAELIASVMLRTKSGGCKSRIHPATRSFQGIRIHVNRELVDLEVGLEAALAALRPGGRLV 263 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+SFHSLEDR+VK+F + S R + + + I + + ++++ N R+ Sbjct: 264 VISFHSLEDRIVKQFISRHSKVPPTNRRLPEVQTFVPLLRMIGR-AIKADEDELEVNPRA 322 Query: 307 RSAKLRAGMR 316 RSA LR + Sbjct: 323 RSAVLRVAEK 332 >gi|153809202|ref|ZP_01961870.1| hypothetical protein BACCAC_03513 [Bacteroides caccae ATCC 43185] gi|149128178|gb|EDM19398.1| hypothetical protein BACCAC_03513 [Bacteroides caccae ATCC 43185] Length = 304 Score = 359 bits (923), Expect = 3e-97, Method: Composition-based stats. Identities = 105/304 (34%), Positives = 161/304 (52%), Gaps = 16/304 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HVPVLL++ + +N P +D TFG G+SR G ++ D+D A E Sbjct: 9 HVPVLLKESVDGMNIRPDGTYVDVTFGGAGHSREILSRLGEGGRLLGFDQDEDA-----E 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 F+ ++ F L +++ VD ++ DLGVSS D +RGFSF+ G L Sbjct: 64 RNIVNDPHFTFVRSNFRYLHNFLRYHNIEQVDAILADLGVSSHHFDDSERGFSFRFDGDL 123 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +G++A+D++N + L I + GE K + ++A IVK R +T + Sbjct: 124 DMRMNKRAGLTAADILNTYEEERLADIFYLYGELKNSRKLASVIVKARNGQQIRTIGEFL 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ F + + FQALRI VN E+E L + L +A +ALK GG L+V+++HS Sbjct: 184 EIIKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLLAATEALKPGGRLVVITYHS 241 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK + + + A + P F+ + KV+VP Q ++ N RSRSAKLR Sbjct: 242 LEDRMVKNIMKTGNVEGKAESDFFGNLQTP--FRLVNNKVIVPDQAEIERNPRSRSAKLR 299 Query: 313 AGMR 316 + Sbjct: 300 IAEK 303 >gi|170718775|ref|YP_001783958.1| S-adenosyl-methyltransferase MraW [Haemophilus somnus 2336] gi|263456057|sp|B0US59|RSMH_HAES2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|168826904|gb|ACA32275.1| S-adenosyl-methyltransferase MraW [Haemophilus somnus 2336] Length = 321 Score = 359 bits (923), Expect = 3e-97, Method: Composition-based stats. Identities = 125/326 (38%), Positives = 178/326 (54%), Gaps = 22/326 (6%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALD 65 MS + +H VLL + + L + +D TFG GG+SR S +IA+D Sbjct: 1 MSMQDTFSSPEHFTVLLREAVGGLALKENGIYIDGTFGRGGHSRFILSQLSKKGQLIAID 60 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCG 121 RDP A+ Q +F + +FS + D G +DG++ DLGVSS Q+D Sbjct: 61 RDPQAIQVAQNI---QDPRFRIVHDSFSAIPDICEKLGLTGKIDGILLDLGVSSPQLDNA 117 Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF K GPLDMRM + G+SA++ + Q + +DL +L GEE+ A RIA AIV Sbjct: 118 ERGFSFMKDGPLDMRMDTTQGLSATEWLRQVSEQDLAWVLKTFGEERFAKRIAQAIVGYN 177 Query: 181 QS------APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234 +S P T L+ LI ++V F K+ HPATRSFQA+RIF+N+E++EL + L Sbjct: 178 KSAVQSGAEPLNRTLQLAELIAQSVPF-KDKYKHPATRSFQAIRIFINSELDELEKVLNG 236 Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA---HPAVFQSITKK 291 A L G L ++SFHSLEDR+VK F +S + + H + + K Sbjct: 237 ALNVLAPQGRLSIISFHSLEDRMVKHFIRKQSKGDDLPKGLPLREEQIQHNQKLKPV-GK 295 Query: 292 VVVPTQEDVAFNRRSRSAKLRAGMRT 317 ++PT++++A N RSRSA LR R Sbjct: 296 AIMPTEQEMAANVRSRSAVLRIAERI 321 >gi|323142009|ref|ZP_08076860.1| S-adenosyl-methyltransferase MraW [Phascolarctobacterium sp. YIT 12067] gi|322413541|gb|EFY04409.1| S-adenosyl-methyltransferase MraW [Phascolarctobacterium sp. YIT 12067] Length = 310 Score = 359 bits (923), Expect = 3e-97, Method: Composition-based stats. Identities = 104/309 (33%), Positives = 167/309 (54%), Gaps = 12/309 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQ 75 H +LL + + L + +D T G G+S +F + G +I +D+D A++ G Sbjct: 4 KHTSILLAESVDFLITDKNGIYVDCTMGGAGHSSAFAAQLEAGGLLIGIDQDDDAIAAGS 63 Query: 76 ETM-RDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSG 131 E + + + ++ ++ F + G+D G+ FDLGVSS Q+D +RGFS+ G Sbjct: 64 ERLLNKFTCKTAVAKSNFEIFSQVLDSMGIDEIDGIFFDLGVSSYQLDTPERGFSYMHDG 123 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ + A +VN ++L I+ GEE+ A RIA IV R+ P TT + Sbjct: 124 PLDMRMNKEASLDAEYIVNHYKEEELADIIHRYGEERWAKRIAQFIVAARKEKPLTTTFE 183 Query: 191 LSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I+K + ++ + HPA R+FQA+RI VNNE+ LA + A LK+GG + V++ Sbjct: 184 LVDVIKKAIPKGARLDGPHPAKRTFQAIRIEVNNELGILADTMERAVNRLKSGGRIGVIT 243 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR++K+ FA + + + + +VP++ +V N RSRS Sbjct: 244 FHSLEDRIIKQTFAKLAKGCTCPPQLPVCVCGKKPLLRKTGN--IVPSKAEVEENPRSRS 301 Query: 309 AKLRAGMRT 317 A+LR ++ Sbjct: 302 ARLRYAIKI 310 >gi|238019059|ref|ZP_04599485.1| hypothetical protein VEIDISOL_00921 [Veillonella dispar ATCC 17748] gi|237864314|gb|EEP65604.1| hypothetical protein VEIDISOL_00921 [Veillonella dispar ATCC 17748] Length = 310 Score = 359 bits (923), Expect = 3e-97, Method: Composition-based stats. Identities = 104/307 (33%), Positives = 163/307 (53%), Gaps = 10/307 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS---FCKMGSNVIALDRDPFAVSCGQ 75 +H VLL + + + P + +D T G G++ + +I LD+D A+S + Sbjct: 4 NHTSVLLRETVDSVVTNPKGIYVDCTLGGAGHAHAVGEMLDPEGMIIGLDQDEDALSVAR 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + D Q FS L++ + ++G VDG +FDLGVSS Q+D +RGFS+ GP Sbjct: 64 QRLSDLTCQVLTIPTNFSNLKEALHNEGIYEVDGFIFDLGVSSYQLDTPERGFSYMNDGP 123 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM ++A +VVN+ + L +I+ GEE+ A RI I+ RQ TT +L Sbjct: 124 LDMRMDKDAPLTAEEVVNEYDADALLQIIRDYGEERWAKRIVEFIINARQEKRITTTGEL 183 Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I++ + + + HPA R+FQA+RI VN E+ L A LK G + V++F Sbjct: 184 VRIIKQAIPAKARQDGPHPAKRTFQAIRIEVNRELAILHDSFVDAVSMLKPKGKIGVITF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+ K+ F S + + H AV ++ K + P+ ++ N R+RSA Sbjct: 244 HSLEDRITKQTFKELSTACICPPELPMCVCNHKAVVKAKN-KAIEPSAGEIEVNPRARSA 302 Query: 310 KLRAGMR 316 KLR ++ Sbjct: 303 KLRVAVK 309 >gi|270157407|ref|ZP_06186064.1| S-adenosyl-methyltransferase MraW [Legionella longbeachae D-4968] gi|289164199|ref|YP_003454337.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Legionella longbeachae NSW150] gi|269989432|gb|EEZ95686.1| S-adenosyl-methyltransferase MraW [Legionella longbeachae D-4968] gi|288857372|emb|CBJ11200.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Legionella longbeachae NSW150] Length = 308 Score = 359 bits (923), Expect = 3e-97, Method: Composition-based stats. Identities = 113/311 (36%), Positives = 174/311 (55%), Gaps = 12/311 (3%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSC 73 + H VLL + I L + D TFG GG+S+ + + A+D+D A+ Sbjct: 1 MATHQSVLLHESITGLAIKSDGIYFDGTFGRGGHSKEILRFLNEEGRLYAIDKDLDAIMY 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGV----DGVVFDLGVSSMQIDCGDRGFSFQK 129 +E D ++F +FQ ++++++ + + GV DG++ DLGVSS Q+D +RGFSF + Sbjct: 61 AKEHF-DQDKRFHIFQGSYAKIEQFATEAGVLGMVDGILLDLGVSSPQLDNPERGFSFMQ 119 Query: 130 SGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM S SA+ VN+A ++T + + GEE+ A RIA AIV R AP TT Sbjct: 120 QGPLDMRMDRSQPMSAARFVNEAETDEMTSVFKLYGEERFAGRIAKAIVTARNIAPITTT 179 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ ++++ + ++ HPATR FQA+RI+VN E+ +L + L L G L+V+ Sbjct: 180 LQLAEIVKEANPKWEKHK-HPATRVFQAIRIYVNQELNDLERCLEQCIHVLAPKGRLVVI 238 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 SFHSLEDR+VK+F ++ I F+ I K ++P Q +++ N R+R Sbjct: 239 SFHSLEDRIVKQFMKNKEEGAKPPPEVPIRYKELKTNFKRI-GKAIMPQQNEISENVRAR 297 Query: 308 SAKLRAGMRTV 318 SA LR G + Sbjct: 298 SAVLRIGEKLA 308 >gi|77361427|ref|YP_341002.1| S-adenosyl-methyltransferase MraW [Pseudoalteromonas haloplanktis TAC125] gi|88909212|sp|Q3IFZ6|RSMH_PSEHT RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|76876338|emb|CAI87560.1| S-adenosyl-dependent methyltransferase [Pseudoalteromonas haloplanktis TAC125] Length = 312 Score = 359 bits (923), Expect = 3e-97, Method: Composition-based stats. Identities = 120/308 (38%), Positives = 177/308 (57%), Gaps = 13/308 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 +HV VL+++ I L P + +D TFG GG+S + A+D+DP A+ Sbjct: 6 EHVSVLMDETIDALAIKPDGIYMDGTFGRGGHSGQILARLGSEGRLQAIDQDPQAIKSA- 64 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E D +F++ FS L VDG++ D+GVSS Q+D RGFSF K G Sbjct: 65 EKFAD-DPRFAIAHTRFSNLYGVAEQNDLIGKVDGILLDIGVSSPQLDDALRGFSFMKDG 123 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + G SA+ + +A + D+T ++ LGEEK RIAH +++ R+ P TT+ Sbjct: 124 PLDMRMDPTTGRSAAQWLAEAELDDITHVIKKLGEEKFGKRIAHKVLEVREHTPITTTKQ 183 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ L+ + V K+ HPATR+FQA+RI++N+E+EE+ L+SA K LK GG L+V+SF Sbjct: 184 LADLVDEAVPV-KDKFKHPATRTFQAIRIYINSELEEIQTALQSAIKVLKPGGRLVVISF 242 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI--TKKVVVPTQEDVAFNRRSRS 308 HSLEDR+VK+F +S R + ++A ++ K + P+ +V N RSRS Sbjct: 243 HSLEDRIVKQFIRKQSRGETLPRGLPLTDAQINQNLTLKAVGKAIKPSAAEVERNPRSRS 302 Query: 309 AKLRAGMR 316 + LR R Sbjct: 303 SVLRIAQR 310 >gi|323491037|ref|ZP_08096229.1| 16S rRNA m(4)C1402 methyltranserfase [Vibrio brasiliensis LMG 20546] gi|323314701|gb|EGA67773.1| 16S rRNA m(4)C1402 methyltranserfase [Vibrio brasiliensis LMG 20546] Length = 316 Score = 359 bits (923), Expect = 3e-97, Method: Composition-based stats. Identities = 118/323 (36%), Positives = 170/323 (52%), Gaps = 23/323 (7%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M+ A H+ VLL + I L P + +D TFG GG+SR+ + ++D Sbjct: 1 MTEAF-----KHISVLLHESIDGLAIKPDGIYIDGTFGRGGHSRTILSKLDENGRLYSID 55 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCG 121 RDP A++ Q+ +F++ FS + +Y D VDGV+ DLGVSS Q+D Sbjct: 56 RDPQAIAEAQKI---DDPRFTIIHGPFSGMAEYAADYDLVGKVDGVLLDLGVSSPQLDDA 112 Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF K GPLDMRM SGI S + +A++ D+T ++ GE+K RIA AIV R Sbjct: 113 ERGFSFMKDGPLDMRMDPTSGIPVSQWLMEADLDDITWVIREFGEDKHVRRIAKAIVAYR 172 Query: 181 QSA---PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 ++ P T L+ LI S + HPATR+FQA RI++N+E+EE+ L+ A Sbjct: 173 ENEENEPLTRTSQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAAS 232 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVV 293 L G L V+SFHSLEDR+VK+F S + + K + Sbjct: 233 ILAPQGRLSVISFHSLEDRMVKRFIRKESKGPEVPHGIPMTEEQIKALGSADLKPVGKAI 292 Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316 P++++V N RSRS+ LR + Sbjct: 293 KPSKQEVEHNARSRSSVLRIAEK 315 >gi|114704930|ref|ZP_01437838.1| S-adenosyl-methyltransferase [Fulvimarina pelagi HTCC2506] gi|114539715|gb|EAU42835.1| S-adenosyl-methyltransferase [Fulvimarina pelagi HTCC2506] Length = 339 Score = 359 bits (923), Expect = 3e-97, Method: Composition-based stats. Identities = 153/324 (47%), Positives = 200/324 (61%), Gaps = 4/324 (1%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETM 78 HVPVLL +VI L P G+ I+D TFGAGGY+R+ G+ VIA+DRDP A+ + Sbjct: 17 PHVPVLLAEVIEALAPNAGETIVDGTFGAGGYTRAILGAGAEVIAIDRDPTAIETARALA 76 Query: 79 RDYKEQFSLFQATFSQLQDYVPDK--GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + + + F + + D+ +DG+V D+GVSSMQID +RGFSFQK GPLDMR Sbjct: 77 GESNGRLTPVAGRFGAMGSLLSDRQGAIDGIVLDVGVSSMQIDKAERGFSFQKDGPLDMR 136 Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 M G +A+DVVN +V DL RI LG+E+ A R A AIV RR++ PF T DL+ ++ Sbjct: 137 MGNHGATAADVVNTLSVGDLARIFNFLGDERHAGRAARAIVARREAKPFVRTLDLAGVVG 196 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 K V K+ +I PATR FQALRIFVN+E+ ELA+ L +AE LK GG L+VVSFHSLEDR Sbjct: 197 KAVGRGKHEKIDPATRCFQALRIFVNDELGELARALVAAEGLLKPGGRLVVVSFHSLEDR 256 Query: 257 LVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 +VK+FF R+G RH+ F + K V ++ + A N R+RSAKLR G R Sbjct: 257 IVKRFFLDRAGTQGGSRHLPDVMPEVPTFSARN-KAVAASEREAADNPRARSAKLRFGTR 315 Query: 317 T-VERSIEDDSFVHLPRLPTLSQF 339 D +F LP L LS+ Sbjct: 316 LEAAPRSGDLAFASLPDLADLSRI 339 >gi|254292761|ref|YP_003058784.1| S-adenosyl-methyltransferase MraW [Hirschia baltica ATCC 49814] gi|254041292|gb|ACT58087.1| S-adenosyl-methyltransferase MraW [Hirschia baltica ATCC 49814] Length = 336 Score = 359 bits (923), Expect = 3e-97, Method: Composition-based stats. Identities = 139/329 (42%), Positives = 190/329 (57%), Gaps = 8/329 (2%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQE 76 G H+PVLLE V+ L P G+V +D T+G GGYSR+ V+A+DRDP A+ + Sbjct: 5 GTHIPVLLEPVVEALAPTDGRVYIDGTYGGGGYSRAVMAVADCTVLAVDRDPDAMQRAWD 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + F +L G VDGV+ DLGVSS QID +RGFSF + GPL Sbjct: 65 H-AGKDPRLKPAPGRFGELDLAARAAGHEYVDGVMLDLGVSSYQIDQAERGFSFMRDGPL 123 Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 DMRM G SA+D VN + KDL I GEE + RIA IVKRR F T DL++ Sbjct: 124 DMRMEQHGPSAADAVNLLSEKDLASIFHFYGEEPASRRIAKFIVKRRDEEKFTRTLDLAN 183 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 LI+ +V + + HPATR FQALR++VN+E+ EL + L ++E+ + +GG L+VV+FHSL Sbjct: 184 LIESSVGGRRGKKTHPATRVFQALRLYVNDELGELVRALVASEEIITSGGRLVVVTFHSL 243 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 EDR+VK F R G + P F+ + +K + PT E+VA N RSRS+KL Sbjct: 244 EDRIVKTFLRERGGAMGGGSRHAPEAPAGKSPTFELVARKAIDPTDEEVAGNPRSRSSKL 303 Query: 312 RAGMRTVERSIEDDSFVHLPRLPTLSQFR 340 R +RT + + S ++ R+P+L Sbjct: 304 RWAIRTDAPTWGEKSGLN-SRIPSLDVLE 331 >gi|325128828|gb|EGC51687.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis N1568] Length = 328 Score = 359 bits (923), Expect = 3e-97, Method: Composition-based stats. Identities = 117/323 (36%), Positives = 174/323 (53%), Gaps = 13/323 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 MS A + H+ VLL + + L V +D TFG GG+SR +I D Sbjct: 1 MSGAESY---RHITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFD 57 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGD 122 +DP A++ +E + ++ + F+ Q + G VDG +FDLG+SS QID G Sbjct: 58 KDPQAIAVAEE-LARSDKRVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGS 116 Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF+ PLDMRM + G+SA++ + + +DL ++ GEE+ + +IA AIV +R Sbjct: 117 RGFSFRFDAPLDMRMDTTRGMSAAEWIAVVSEQDLHEVIKNYGEERFSRQIARAIVAQRA 176 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 +P TT+ L+ ++ + V + + PATR+FQA+RIF+N E+EE+ L LK Sbjct: 177 ESPIDTTRKLAQIVAQNVRTRERGQ-DPATRTFQAVRIFINRELEEVGAVLPQVMCRLKE 235 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDV 300 GG L V++FHSLEDR+VK+F S R A P + I + + P + ++ Sbjct: 236 GGRLAVIAFHSLEDRIVKQFVKKYSQHAPLPRWAAVREADLPELPLKIVGRALKPGEAEI 295 Query: 301 AFNRRSRSAKLRAGMRTVERSIE 323 A N R+RSA LR RT E Sbjct: 296 AANPRARSAVLRVAERTAGPIPE 318 >gi|56459539|ref|YP_154820.1| S-adenosyl-methyltransferase MraW [Idiomarina loihiensis L2TR] gi|68565448|sp|Q5R0L7|RSMH_IDILO RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|56178549|gb|AAV81271.1| Predicted S-adenosylmethionine-dependent methyltransferase [Idiomarina loihiensis L2TR] Length = 315 Score = 359 bits (923), Expect = 3e-97, Method: Composition-based stats. Identities = 125/317 (39%), Positives = 181/317 (57%), Gaps = 13/317 (4%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPF 69 + T HV VLLE+ I L P +DATFG GG++R+ VIALD+DP Sbjct: 1 MITTSPQHVSVLLEESIEALATDPQGTYIDATFGRGGHTRALLNQLGDDARVIALDQDPE 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGF 125 A++ D +F + FS LQ + D + V G++FDLGVSS Q+D +RGF Sbjct: 61 AIAAAAAFADD--PRFQIIHTPFSNLQQVLDDLQLNRQVTGILFDLGVSSPQLDDAERGF 118 Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF + GPLDMRM+ SG +A++ +N+A D++ +L GEE+ A RIA AIV R+ P Sbjct: 119 SFMRDGPLDMRMNTTSGETAAEWLNRAEKDDISWVLKEYGEERFARRIASAIVMDREKKP 178 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 F T+ L+ +I + + ++ HPATR+FQA+RI +N E+E++ Q L ++ LK G Sbjct: 179 FTRTKQLAEMIARVSPVKEKHK-HPATRTFQAIRIHINRELEQIEQALEASLSGLKEDGR 237 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK--KVVVPTQEDVAF 302 L+V+SFHSLEDRLVK+F S + + A +++ K K + P + +V Sbjct: 238 LVVISFHSLEDRLVKRFIRKHSEGKQLPPGLPVTEAERNKDKALEKVGKAIKPGKAEVQL 297 Query: 303 NRRSRSAKLRAGMRTVE 319 N RSRS+ LR R Sbjct: 298 NPRSRSSVLRIARRVRN 314 >gi|325578829|ref|ZP_08148876.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Haemophilus parainfluenzae ATCC 33392] gi|325159653|gb|EGC71785.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Haemophilus parainfluenzae ATCC 33392] Length = 322 Score = 359 bits (922), Expect = 3e-97, Method: Composition-based stats. Identities = 122/325 (37%), Positives = 176/325 (54%), Gaps = 20/325 (6%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M++ + +H+ VLL + + L + +D TFG GG+SR +IA+D Sbjct: 1 MTTQNSFSAPEHITVLLHEAVNGLALKENGIYIDGTFGRGGHSRLILSQLSENGRLIAVD 60 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCG 121 RDP A++ ++ +F + +FS + D +DG++ DLGVSS Q+D Sbjct: 61 RDPRAIAEAEKI---QDPRFHIEHNSFSHIPDICQKLDLVGKIDGILLDLGVSSPQLDEA 117 Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 DRGFSF K GPLDMRM + G+SA++ + Q +V DLT +L GEE+ A RIA AIV+ Sbjct: 118 DRGFSFMKDGPLDMRMDTTQGLSAAEWLKQVSVDDLTWVLKTFGEERFAKRIATAIVEFN 177 Query: 181 Q------SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234 + + T L+ LI + V F K+ HPATRSFQA+RI++N E++EL L S Sbjct: 178 KRAIKNGTECLSRTSQLAELIAQAVPF-KDKHKHPATRSFQAIRIYINAELDELESVLNS 236 Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ--SITKKV 292 A L G L ++SFHSLEDR+VK F +S R + Q I K Sbjct: 237 ALDMLAPEGRLSIISFHSLEDRMVKHFMRKQSKGDDIPRGLPLREDQIQRNQKLKIIGKA 296 Query: 293 VVPTQEDVAFNRRSRSAKLRAGMRT 317 + P++ +++ N RSRSA LR R Sbjct: 297 IQPSEAEISANPRSRSAVLRIAERV 321 >gi|319900359|ref|YP_004160087.1| S-adenosyl-methyltransferase MraW [Bacteroides helcogenes P 36-108] gi|319415390|gb|ADV42501.1| S-adenosyl-methyltransferase MraW [Bacteroides helcogenes P 36-108] Length = 306 Score = 359 bits (922), Expect = 3e-97, Method: Composition-based stats. Identities = 107/308 (34%), Positives = 163/308 (52%), Gaps = 16/308 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPFAVSCGQE 76 H+PVLL + +N P +D TFG GG+SR K G ++ D+D A E Sbjct: 8 HIPVLLMPSVDGMNIRPDGTYVDVTFGGGGHSREILTRLKDGGRLLGFDQDEDA-----E 62 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 F+ ++ F L +++ G VD ++ DLGVSS D RGFSF+ G L Sbjct: 63 RNIVNDPHFTFVRSNFRYLHNFLRYHGIGQVDAILADLGVSSHHFDDSQRGFSFRFDGEL 122 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +G +A+DVVN + + L I + GE K + ++A I K R + T + Sbjct: 123 DMRMNKRAGTTAADVVNNCSEEHLADIFYLYGELKNSRKLASVIAKARAAQKITTIGEFL 182 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ F + + FQALRI VN+E+E L + L +A +ALK GG L+V+++HS Sbjct: 183 DIIKPL--FGREREKKELAKVFQALRIEVNHEMEALKEMLYAATEALKPGGRLVVITYHS 240 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK + + + A + + P F+ + KV+VP + ++ N RSRSAKLR Sbjct: 241 LEDRMVKNIMKTGNVEGKAEKDFFGNVQTP--FRLVNNKVIVPDEAEIERNPRSRSAKLR 298 Query: 313 AGMRTVER 320 + + Sbjct: 299 IAEKVERK 306 >gi|300726283|ref|ZP_07059736.1| S-adenosyl-methyltransferase MraW [Prevotella bryantii B14] gi|299776480|gb|EFI73037.1| S-adenosyl-methyltransferase MraW [Prevotella bryantii B14] Length = 318 Score = 359 bits (922), Expect = 3e-97, Method: Composition-based stats. Identities = 111/313 (35%), Positives = 171/313 (54%), Gaps = 20/313 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA-----V 71 HVPVLLE+ + LN PG + +D TFG GG+S +++ + D+D A Sbjct: 9 HVPVLLEQTVNGLNIQPGGIYIDVTFGGGGHSSKILSCLDSQAHLYSFDQDADAENNIYY 68 Query: 72 SCGQETMRDY----KEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRG 124 + +D+ +F+ ++ F +++++ VD G++ DLGVSS D DRG Sbjct: 69 AEAGSNEKDHRFIDDPRFTFVRSNFRYIKNWMRYYHVDYIDGLLADLGVSSHHFDDKDRG 128 Query: 125 FSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 FSF+ PLDMRM+ + ++A+D+VN L I + GE K + +IA+A+V+ RQ+ Sbjct: 129 FSFRFDSPLDMRMNKRADMTAADIVNNYPESQLADIFYLYGELKNSRKIANALVRYRQNQ 188 Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 TTQD + F + R FQALRI VN+E++ L + L SA + L+ GG Sbjct: 189 KILTTQDFIKATEPL--FKREKEKKDMARLFQALRIEVNHEMDALKEMLNSATELLRPGG 246 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 L V+++HSLEDR+VK S + + V+ + P ++ I KV++P QE+ N Sbjct: 247 RLSVITYHSLEDRIVKNVMKSGNPEGKIVKDFFGKSETP--YKLINNKVIIPDQEEQENN 304 Query: 304 RRSRSAKLRAGMR 316 RSRSAKLR + Sbjct: 305 PRSRSAKLRIAEK 317 >gi|113971906|ref|YP_735699.1| S-adenosyl-methyltransferase MraW [Shewanella sp. MR-4] gi|122943466|sp|Q0HE75|RSMH_SHESM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|113886590|gb|ABI40642.1| S-adenosyl-methyltransferase MraW [Shewanella sp. MR-4] Length = 313 Score = 359 bits (922), Expect = 3e-97, Method: Composition-based stats. Identities = 116/307 (37%), Positives = 172/307 (56%), Gaps = 13/307 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H+ VLLE+ + LN + +D TFG GG+SR + +IA+DRDP A+ ++ Sbjct: 7 HLSVLLEETVGGLNIKDDGIYIDGTFGRGGHSRQVLQRLGENGRLIAIDRDPQAIEAAKQ 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 D +F + F QL DYV + G +DGV+ DLGVSS Q+D +RGFSF + GP Sbjct: 67 FADD--PRFQIVHGGFGQLADYVEELGLVGKIDGVLLDLGVSSPQLDDAERGFSFLRDGP 124 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G +A+ + +A ++D+ + GEEK A IA I R PF T+DL Sbjct: 125 LDMRMDNSQGETAAQWLARAEIEDMAWVFKTYGEEKNARHIARCIAADRDKTPFLRTKDL 184 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI + + N+ HPATR FQA+RI++N+E++++ Q L A L G L ++SFH Sbjct: 185 ADLIARITKNKERNK-HPATRVFQAIRIYINSELDQIDQALEGALTVLAPQGRLSIISFH 243 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI--TKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK+F S + + + + K ++P+ E++ N R+RS+ Sbjct: 244 SLEDRIVKRFIRRHSQGESVPHGLPITEDQINKSRKLRAIGKAIMPSDEEIERNARARSS 303 Query: 310 KLRAGMR 316 LR R Sbjct: 304 VLRIAER 310 >gi|238760089|ref|ZP_04621239.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia aldovae ATCC 35236] gi|238701708|gb|EEP94275.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia aldovae ATCC 35236] Length = 320 Score = 359 bits (922), Expect = 3e-97, Method: Composition-based stats. Identities = 120/312 (38%), Positives = 175/312 (56%), Gaps = 19/312 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H VLL++ + LN + +D TFG GG+SR +IA+DRDP A+ + Sbjct: 13 KHTSVLLDEAVNGLNIRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDRDPQAIDAAK 72 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +FS+ FS L YV + +DGV+ DLGVSS Q+D +RGFSF + G Sbjct: 73 SI---TDSRFSIVHGPFSDLAHYVRELDLVGRIDGVLLDLGVSSPQLDDPERGFSFMRDG 129 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + G+SA+D + +A+ D+ +L GEE+ A R+A AIV+R + P T++ Sbjct: 130 PLDMRMDPTRGLSAADWLMKASADDIAWVLKTFGEERFAKRLAKAIVERNLTQPMTRTKE 189 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ LI F + ++ HPATRSFQA+RI++N+E+EE+ + L A + L G L V+SF Sbjct: 190 LADLIANASPFREKHK-HPATRSFQAIRIYINSELEEIERALDGALEVLAPEGRLSVISF 248 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNRR 305 HSLEDR+VK F S + + A +S+ K ++P +VA N R Sbjct: 249 HSLEDRIVKNFIRHHSRGPQVPAGLPLTEAQLRSMGGRTLKSVGK--MMPPDAEVAENPR 306 Query: 306 SRSAKLRAGMRT 317 +RS+ LR R Sbjct: 307 ARSSVLRFAERI 318 >gi|225023749|ref|ZP_03712941.1| hypothetical protein EIKCOROL_00613 [Eikenella corrodens ATCC 23834] gi|224943631|gb|EEG24840.1| hypothetical protein EIKCOROL_00613 [Eikenella corrodens ATCC 23834] Length = 318 Score = 359 bits (922), Expect = 3e-97, Method: Composition-based stats. Identities = 115/308 (37%), Positives = 170/308 (55%), Gaps = 12/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 HV VLL + + L PG V +D TFG GG+SR ++ D+DP A++ ++ Sbjct: 8 HVTVLLHEAVDALEVKPGGVYVDGTFGRGGHSRLILSKLGANGRLVVFDKDPQAIAVARQ 67 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + ++ + FS Q + G VDG +FDLGVSS QID +RGFSF+ PL Sbjct: 68 -LAEVDKRVQVVHGGFSGFQVALKGLGIEAVDGALFDLGVSSPQIDDAERGFSFRYDAPL 126 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + G +A+ + +A +++ ++ GEE+ S+IA AIV++RQ P TT L+ Sbjct: 127 DMRMDTTRGQTAAQWLAEAGEEEIREVIRDYGEERFNSQIARAIVQQRQERPILTTGQLA 186 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 L + V + + PATR+FQA+RIF+N E+EE++ L A LK GG L V++FHS Sbjct: 187 QLAAQAVRTRERGQ-DPATRTFQAIRIFINRELEEISAVLPQAAGYLKTGGRLAVIAFHS 245 Query: 253 LEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 LEDR+VK+F S + ++ S + I K + + A N R+RSA Sbjct: 246 LEDRIVKQFIRRHSRPTPLPKWVMVRESERPEPPLREI-GKAQRASAAETAANPRARSAV 304 Query: 311 LRAGMRTV 318 LR RT Sbjct: 305 LRVAERTA 312 >gi|166710645|ref|ZP_02241852.1| S-adenosyl-methyltransferase MraW [Xanthomonas oryzae pv. oryzicola BLS256] Length = 347 Score = 359 bits (922), Expect = 3e-97, Method: Composition-based stats. Identities = 118/309 (38%), Positives = 174/309 (56%), Gaps = 7/309 (2%) Query: 12 AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDP 68 + HVPVL +V+ L LD TFG GG++R + G ++ +D+DP Sbjct: 10 PVSQPPAAHVPVLYTQVLDGLQVTENGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDP 69 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 A++ ++T + S+ + +F+ L V VDG++ DLGVSS Q+D RGFSF Sbjct: 70 EAIAVAEQTFGG-DARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLDVAGRGFSFG 128 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 K GPLDMRM SG SA+ + QA +++ +L GEE+Q+ RIA AIV RR P Sbjct: 129 KDGPLDMRMDPDSGQSAAQWLAQATDREIADVLWTYGEERQSRRIARAIVARRAEQPLLR 188 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T L+ LI + +++ HPATRSFQA+RI++N E+++L GL +A ALK GG L V Sbjct: 189 TAQLADLIASVMPRG-DSKTHPATRSFQAIRIYINRELDDLETGLDAALAALKPGGRLAV 247 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +SFHSLEDR+VK+F A + + R + + Q ++ + ++ N R+R Sbjct: 248 ISFHSLEDRIVKQFMARYAKAPPSNRRLPEAQPFVPTLQLVS-GAIKADDAELNVNPRAR 306 Query: 308 SAKLRAGMR 316 SA LR + Sbjct: 307 SAVLRVAEK 315 >gi|121635455|ref|YP_975700.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis FAM18] gi|262825519|sp|A1KVM4|RSMH_NEIMF RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|120867161|emb|CAM10928.1| conserved hypothetical protein [Neisseria meningitidis FAM18] gi|325132957|gb|EGC55634.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis M6190] gi|325138945|gb|EGC61495.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis ES14902] gi|325144950|gb|EGC67233.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis M01-240013] Length = 328 Score = 359 bits (922), Expect = 3e-97, Method: Composition-based stats. Identities = 118/323 (36%), Positives = 175/323 (54%), Gaps = 13/323 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 MS A + H+ VLL + + L V +D TFG GG+SR +I D Sbjct: 1 MSGAESY---RHITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFD 57 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGD 122 +DP A++ +E + ++ + F+ Q + G VDG +FDLG+SS QID G Sbjct: 58 KDPQAIAVAEE-LARSDKRVGVVHGGFASFQAALDGLGIGKVDGALFDLGISSPQIDDGS 116 Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF+ PLDMRM + G+SA++ + A+ +DL ++ GEE+ + +IA AIV +R Sbjct: 117 RGFSFRFDAPLDMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRA 176 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 +P TT+ L+ ++ + V + + PATR+FQA+RIF+N E+EE+ L LK Sbjct: 177 ESPIDTTRKLAQIVAQNVRTRERGQ-DPATRTFQAVRIFINRELEEVGAVLPQVMCRLKE 235 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDV 300 GG L V++FHSLEDR+VK+F S R A P + I + + P + ++ Sbjct: 236 GGRLAVIAFHSLEDRIVKQFVKKYSQHAPLPRWAAVREADLPELPLKIVGRALKPGEAEI 295 Query: 301 AFNRRSRSAKLRAGMRTVERSIE 323 A N R+RSA LR RT E Sbjct: 296 AANPRARSAVLRVAERTAGPIPE 318 >gi|212692815|ref|ZP_03300943.1| hypothetical protein BACDOR_02314 [Bacteroides dorei DSM 17855] gi|212664604|gb|EEB25176.1| hypothetical protein BACDOR_02314 [Bacteroides dorei DSM 17855] Length = 304 Score = 359 bits (922), Expect = 3e-97, Method: Composition-based stats. Identities = 108/304 (35%), Positives = 165/304 (54%), Gaps = 16/304 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H+PVLL + + +N PG + +DATFG GG+S+ +++ + D+D A Sbjct: 9 HIPVLLNESVDGMNIQPGGIYVDATFGGGGHSKEILSRLDSTAHLYSFDQDEDAEKNIVS 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +F+ ++ F L +++ V D ++ DLGVSS D +RGFSF+ G L Sbjct: 69 -----DSRFTFVRSNFRYLSNFLRYYDVEEVDAILADLGVSSHHFDDSERGFSFRFEGKL 123 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +G++A+DVVN + + L I + GE K + ++A IVK R T D Sbjct: 124 DMRMNKRAGMTAADVVNTYDEERLANIFYLYGELKNSHKLASTIVKARGVKQIITIGDFL 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ F + + FQALRI VN E+E L + L +A KALK GG L+V+++HS Sbjct: 184 EVIKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLYAAAKALKPGGRLVVITYHS 241 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK + + + A + + P F+ + KV+V E+V N RSRSAKLR Sbjct: 242 LEDRMVKNIMKTGNIEGKAEQDFFGNVQTP--FKLVNSKVIVAGNEEVTCNPRSRSAKLR 299 Query: 313 AGMR 316 + Sbjct: 300 IAEK 303 >gi|327404192|ref|YP_004345030.1| Ribosomal RNA small subunit methyltransferase H [Fluviicola taffensis DSM 16823] gi|327319700|gb|AEA44192.1| Ribosomal RNA small subunit methyltransferase H [Fluviicola taffensis DSM 16823] Length = 308 Score = 359 bits (922), Expect = 3e-97, Method: Composition-based stats. Identities = 103/313 (32%), Positives = 160/313 (51%), Gaps = 16/313 (5%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFA 70 ++ HVPV+L++ + L P + +D TFG GG+SR+ +I D+DP A Sbjct: 3 NNDATYHVPVMLQECLDGLVINPDGIYVDVTFGGGGHSRAIFEKLSPKGKLIVFDQDPDA 62 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSF 127 + E F A F+ L++++ G VDG++ DLGVSS Q D RGFS Sbjct: 63 RANAWE-----APNFHFVAANFAFLRNHLRVMGIPAVDGILADLGVSSHQFDDAKRGFSI 117 Query: 128 QKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + + LDMRM+ +G +A+ +V + + L I GE + A +VK R + + Sbjct: 118 RSNEVLDMRMNQAGDFTAAKIVQTYDEEQLAAIFRKYGELDHPFKTAVELVKARNKSKIK 177 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 TT +L + K+++ + FQALRI VN E++ L + L +LK G L+ Sbjct: 178 TTGELMEALMPVAPKFKDHK--FFAQVFQALRIEVNQEMDVLEKFLLQTADSLKPDGRLV 235 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+S+HSLEDRLVK S + P F+ I +K ++P++E++ N R+ Sbjct: 236 VMSYHSLEDRLVKNLMKRGSLDGSIEKDFFGKVLKP--FEEINRKPILPSEEEIQRNTRA 293 Query: 307 RSAKLRAGMRTVE 319 RSAKLR R + Sbjct: 294 RSAKLRIAKRVED 306 >gi|253997377|ref|YP_003049441.1| S-adenosyl-methyltransferase MraW [Methylotenera mobilis JLW8] gi|253984056|gb|ACT48914.1| S-adenosyl-methyltransferase MraW [Methylotenera mobilis JLW8] Length = 360 Score = 359 bits (922), Expect = 3e-97, Method: Composition-based stats. Identities = 116/317 (36%), Positives = 169/317 (53%), Gaps = 17/317 (5%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDR 66 SSA+H H+ VLL + + L+ P + +D TFG GG+SR +IA DR Sbjct: 49 SSAVH----AHITVLLNEAVRALDIKPNGIYVDGTFGRGGHSRKILAQLGDAGRLIAFDR 104 Query: 67 DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDR 123 D A+ G+ +F+L + F+ ++ + + GV DG++ DLG+SS QID +R Sbjct: 105 DLAAIEAGK---AIDDPRFTLVHSHFADMRKRLAELGVQHVDGILLDLGISSPQIDEAER 161 Query: 124 GFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GFSF+ PLDMRM S G +A+D + + + L ++ GEE+ A IA AI+ R Sbjct: 162 GFSFRYDAPLDMRMDQSSGETAADFLGRTTEQQLAEVIKNYGEERFAKSIARAIIAERND 221 Query: 183 AP-FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 TT L+ ++ V + + +PATR+FQALRIFVN E+EEL+ + + L Sbjct: 222 GRAITTTGQLAQIVAGAVTRFEPGQ-NPATRTFQALRIFVNQELEELSLTMPQCLELLAP 280 Query: 242 GGLLIVVSFHSLEDRLVKKFFA-SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300 G L ++SFHSLEDR+VK+F + + + P K V P+ E+V Sbjct: 281 HGRLAIISFHSLEDRMVKQFIRGQEDRDDLPANFPVRAADLPQPRLKSVGKAVKPSDEEV 340 Query: 301 AFNRRSRSAKLRAGMRT 317 N RSRSA LR RT Sbjct: 341 RSNPRSRSAVLRVAERT 357 >gi|52841149|ref|YP_094948.1| S-adenosyl-methyltransferase MraW [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628260|gb|AAU27001.1| S-adenosylmethyl transferase MraW [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 334 Score = 359 bits (922), Expect = 4e-97, Method: Composition-based stats. Identities = 116/312 (37%), Positives = 168/312 (53%), Gaps = 12/312 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 + H VLL + I L + D TFG GG+SR + A+D+D AV Sbjct: 26 EMAKHQSVLLHESIKGLAIKADGIYFDGTFGRGGHSREILNHLSDKGRLFAIDKDLDAVQ 85 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKGV----DGVVFDLGVSSMQIDCGDRGFSFQ 128 ++ ++F +F +F+Q++++ GV DG++ DLGVSS Q+D +RGFSF Sbjct: 86 YAKDYF-GLDKRFQIFHGSFAQIKEFASQAGVIGAVDGILLDLGVSSPQLDNPERGFSFM 144 Query: 129 KSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 GPLDMRM I+A++ VN+A V +L + GEE+ A RIA AIV R+ P T Sbjct: 145 LQGPLDMRMDLTQSINAANFVNEAEVNELAHVFRAYGEERFAGRIAKAIVDARKLKPITT 204 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T +L+ ++++ + ++ HPATR FQA+RI VN E+ +L+ L L GG L V Sbjct: 205 TLELAEIVKEANPKWEKHK-HPATRVFQAIRIHVNQELTDLSNCLEQCLDVLGPGGRLAV 263 Query: 248 VSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 +SFHSLEDR+VK+F + G V I F+ + K V P ++ N RS Sbjct: 264 ISFHSLEDRIVKQFMRDKEQGNRPPVEVPIKYEELKTNFKKV-GKAVKPQSSEIKENVRS 322 Query: 307 RSAKLRAGMRTV 318 RSA LR G + Sbjct: 323 RSAVLRIGEKLA 334 >gi|54293889|ref|YP_126304.1| hypothetical protein lpl0945 [Legionella pneumophila str. Lens] gi|54296934|ref|YP_123303.1| S-adenosyl-methyltransferase MraW [Legionella pneumophila str. Paris] gi|68565457|sp|Q5WXZ4|RSMH_LEGPL RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|68565459|sp|Q5X6J0|RSMH_LEGPA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|68565463|sp|Q5ZX19|RSMH_LEGPH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|53750719|emb|CAH12126.1| hypothetical protein lpp0975 [Legionella pneumophila str. Paris] gi|53753721|emb|CAH15179.1| hypothetical protein lpl0945 [Legionella pneumophila str. Lens] Length = 308 Score = 359 bits (922), Expect = 4e-97, Method: Composition-based stats. Identities = 116/311 (37%), Positives = 168/311 (54%), Gaps = 12/311 (3%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H VLL + I L + D TFG GG+SR + A+D+D AV Sbjct: 1 MAKHQSVLLHESIKGLAIKADGIYFDGTFGRGGHSREILNHLSDKGRLFAIDKDLDAVQY 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGV----DGVVFDLGVSSMQIDCGDRGFSFQK 129 ++ ++F +F +F+Q++++ GV DG++ DLGVSS Q+D +RGFSF Sbjct: 61 AKDYF-GLDKRFQIFHGSFAQIKEFASQAGVIGAVDGILLDLGVSSPQLDNPERGFSFML 119 Query: 130 SGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM I+A++ VN+A V +L + GEE+ A RIA AIV R+ P TT Sbjct: 120 QGPLDMRMDLTQSINAANFVNEAEVNELAHVFRAYGEERFAGRIAKAIVDARKLKPITTT 179 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ ++++ + ++ HPATR FQA+RI VN E+ +L+ L L GG L V+ Sbjct: 180 LELAEIVKEANPKWEKHK-HPATRVFQAIRIHVNQELTDLSNCLEQCLDVLGPGGRLAVI 238 Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 SFHSLEDR+VK+F + G V I F+ + K V P ++ N RSR Sbjct: 239 SFHSLEDRIVKQFMRDKEQGNRPPVEVPIKYEELKTNFKKV-GKAVKPQSSEIKENVRSR 297 Query: 308 SAKLRAGMRTV 318 SA LR G + Sbjct: 298 SAVLRIGEKLA 308 >gi|117922183|ref|YP_871375.1| S-adenosyl-methyltransferase MraW [Shewanella sp. ANA-3] gi|262826555|sp|A0L1Q0|RSMH_SHESA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|117614515|gb|ABK49969.1| S-adenosyl-methyltransferase MraW [Shewanella sp. ANA-3] Length = 313 Score = 359 bits (922), Expect = 4e-97, Method: Composition-based stats. Identities = 116/307 (37%), Positives = 172/307 (56%), Gaps = 13/307 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H+ VLLE+ + LN + +D TFG GG+SR + +IA+DRDP A+ ++ Sbjct: 7 HLSVLLEETVGGLNIKDDGIYIDGTFGRGGHSRQVLQRLGENGRLIAIDRDPQAIEAAKQ 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 D +F + F QL DYV + G +DGV+ DLGVSS Q+D +RGFSF + GP Sbjct: 67 FADD--PRFQIVHGGFGQLADYVEELGLVGKIDGVLLDLGVSSPQLDDAERGFSFLRDGP 124 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G +A+ + +A ++D+ + GEEK A IA I R PF T+DL Sbjct: 125 LDMRMDNSQGETAAQWLARAEIEDMAWVFKTYGEEKNARHIARCIAADRDKTPFLRTKDL 184 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI + + N+ HPATR FQA+RI++N+E++++ Q L A L G L ++SFH Sbjct: 185 ADLIARITKNKERNK-HPATRVFQAIRIYINSELDQIDQALEGALTILAPQGRLSIISFH 243 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI--TKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK+F S + + + + K ++P+ E++ N R+RS+ Sbjct: 244 SLEDRIVKRFIRRHSQGESVPHGLPITEDQINKSRKLRAIGKAIMPSDEEIERNARARSS 303 Query: 310 KLRAGMR 316 LR R Sbjct: 304 VLRIAER 310 >gi|238791165|ref|ZP_04634804.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia intermedia ATCC 29909] gi|238729298|gb|EEQ20813.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia intermedia ATCC 29909] Length = 320 Score = 359 bits (922), Expect = 4e-97, Method: Composition-based stats. Identities = 121/312 (38%), Positives = 175/312 (56%), Gaps = 15/312 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H VLL++ + LN + +D TFG GG+SR +IA+DRDP A+ + Sbjct: 13 KHTSVLLDEAVNGLNIRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDRDPQAIEAAK 72 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +FS+ FS+L YV + +DGV+ DLGVSS Q+D +RGFSF + G Sbjct: 73 SI---TDPRFSIVHGPFSELAHYVRELDLVGRIDGVLLDLGVSSPQLDDPERGFSFMRDG 129 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S G+SA++ + +A+ D+ +L GEE+ A R+A AIV+R + P T++ Sbjct: 130 PLDMRMDPSRGLSAAEWLMKASADDIAWVLKTFGEERFAKRLAKAIVERNLTQPMTRTKE 189 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ LI F + ++ HPATRSFQA+RI++N+E+EE+ + L A + L G L V+SF Sbjct: 190 LADLIANASPFREKHK-HPATRSFQAIRIYINSELEEIERALDGALEVLAPAGRLSVISF 248 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV---VVPTQEDVAFNRRSR 307 HSLEDR+VK F S + + A T K ++P +VA N R+R Sbjct: 249 HSLEDRIVKNFIRHHSRGPQVPAGLPLTEAQLRSMGGRTLKSAGKMMPPDAEVAENPRAR 308 Query: 308 SAKLRAGMRTVE 319 S+ LR R E Sbjct: 309 SSVLRFAERIKE 320 >gi|237716641|ref|ZP_04547122.1| S-adenosyl-methyltransferase mraW [Bacteroides sp. D1] gi|262405416|ref|ZP_06081966.1| MraW methylase [Bacteroides sp. 2_1_22] gi|294809136|ref|ZP_06767854.1| S-adenosyl-methyltransferase MraW [Bacteroides xylanisolvens SD CC 1b] gi|229442624|gb|EEO48415.1| S-adenosyl-methyltransferase mraW [Bacteroides sp. D1] gi|262356291|gb|EEZ05381.1| MraW methylase [Bacteroides sp. 2_1_22] gi|294443690|gb|EFG12439.1| S-adenosyl-methyltransferase MraW [Bacteroides xylanisolvens SD CC 1b] Length = 304 Score = 359 bits (922), Expect = 4e-97, Method: Composition-based stats. Identities = 107/304 (35%), Positives = 162/304 (53%), Gaps = 16/304 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HVPVLL++ + +N P +D TFG G+SR G ++ D+D A E Sbjct: 9 HVPVLLKESVDGMNIQPDGTYVDVTFGGAGHSREILSRLGEGGRLLGFDQDEDA-----E 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 F ++ F LQ+++ VD ++ DLGVSS D +RGFSF+ G L Sbjct: 64 RNIVNDPHFIFVRSNFRYLQNFLRYHDIEQVDAILADLGVSSHHFDDSERGFSFRFDGAL 123 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +GI+A+D+VN + L +L + GE K + ++A IVK R +T + Sbjct: 124 DMRMNKRAGITAADIVNTYEEERLANLLYLYGELKNSRKLASVIVKARSGQYIRTIGEFL 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ F + + FQALRI VN E+E L + L +A +ALK GG L+V+++HS Sbjct: 184 EIIKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLLAATEALKPGGRLVVITYHS 241 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK + + + A + P F+ + KV+VP + ++ N RSRSAKLR Sbjct: 242 LEDRMVKNIMKTGNVEGKAESDFFGNLQTP--FRLVNNKVIVPDEAEIERNPRSRSAKLR 299 Query: 313 AGMR 316 + Sbjct: 300 IAEK 303 >gi|261378431|ref|ZP_05983004.1| S-adenosyl-methyltransferase MraW [Neisseria cinerea ATCC 14685] gi|269145209|gb|EEZ71627.1| S-adenosyl-methyltransferase MraW [Neisseria cinerea ATCC 14685] Length = 319 Score = 359 bits (922), Expect = 4e-97, Method: Composition-based stats. Identities = 117/324 (36%), Positives = 172/324 (53%), Gaps = 15/324 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 MS + H+ VLL + + L V +D TFG GG+SR +I D Sbjct: 1 MSETEGYQ---HITVLLHEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDTGRLIVFD 57 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGD 122 +DP A++ +E + ++ S+ F+ Q + D G VDG +FDLGVSS QID Sbjct: 58 KDPQAIAVAEE-LARSDKRVSVVHGGFASFQTALDDLGIGDVDGALFDLGVSSPQIDDAV 116 Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF+ PLDMRM + G+SA++ + A+ +DL ++ GEE+ + +IA AIV +R Sbjct: 117 RGFSFRFDAPLDMRMDTTRGMSAAEWIASASEQDLHEVIKNYGEERFSRQIARAIVAQRT 176 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 P TT L+ + + V + + PATR+FQA+RIF+N E+EE+ L LK Sbjct: 177 ENPIDTTGKLAKIAAENVRTRERGQ-DPATRTFQAVRIFINRELEEVEAVLPQVMCRLKE 235 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQED 299 GG L V++FHSLEDR+VK+F S R ++ +++ K + P +E+ Sbjct: 236 GGRLAVIAFHSLEDRIVKQFVRKYSQHAPLPRWAAVREADLPEPPLKAV-GKAIKPCEEE 294 Query: 300 VAFNRRSRSAKLRAGMRTVERSIE 323 N R+RSA LR RT E Sbjct: 295 TVANPRARSAVLRVAERTAGPIPE 318 >gi|50365212|ref|YP_053637.1| cell membrane substrate S-adenosyl-methyltransferase [Mesoplasma florum L1] gi|54036182|sp|Q6F170|RSMH_MESFL RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|50363768|gb|AAT75753.1| cell membrane substrate S-adenosyl-methyltransferase [Mesoplasma florum L1] Length = 308 Score = 359 bits (922), Expect = 4e-97, Method: Composition-based stats. Identities = 107/310 (34%), Positives = 166/310 (53%), Gaps = 13/310 (4%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74 + H+PVLL++ I LN + +D T G G+S K + ++D+D A+ G Sbjct: 1 MEKHIPVLLKESIEYLNIKENGIYVDCTLGRAGHSSEILKKLKDGKLFSIDQDETAILEG 60 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E + F + + F + + +G VDG+++DLGVSS Q D +RGFS++ G Sbjct: 61 TEKLTKISNNFKILEGNFVNISAMLAMQGIFEVDGILYDLGVSSPQFDVAERGFSYRFDG 120 Query: 132 PLDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM + ++A +VN+ ++L +IL G+EK A IA I+ R P TT Sbjct: 121 PLDMRMDRANNSLTAHKIVNEYTQEELEQILWNYGDEKFARSIAKNIILSR---PINTTF 177 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L S+I+K++ + HPA ++FQALRI VNNE+E L L + LK G ++V+ Sbjct: 178 ELVSVIKKSLPAKILKQQKHPAKKTFQALRIRVNNEMETLESSLEQSLNLLKPKGRVVVI 237 Query: 249 SFHSLEDRLVKKFFASRSGKVMA-VRHMIPSNAHPAV-FQSITKKVVVPTQEDVAFNRRS 306 +FHSLE+++VK F + +P + F+ + KK + PT +V N RS Sbjct: 238 TFHSLEEKVVKNIFKKYTLDEQQFYLSNLPYEIESSKDFKLLFKKPLKPTNTEVENNNRS 297 Query: 307 RSAKLRAGMR 316 SAKL + Sbjct: 298 HSAKLWVIEK 307 >gi|85712541|ref|ZP_01043589.1| S-adenosyl-methyltransferase [Idiomarina baltica OS145] gi|85693675|gb|EAQ31625.1| S-adenosyl-methyltransferase [Idiomarina baltica OS145] Length = 315 Score = 359 bits (922), Expect = 4e-97, Method: Composition-based stats. Identities = 124/316 (39%), Positives = 181/316 (57%), Gaps = 13/316 (4%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69 + H+ VLLE+ I L P + +DATFG GG++R+ VIALD+DP Sbjct: 1 MTEQNAPHISVLLEESIRALVTDPDGIYIDATFGRGGHTRALLSKLSPKGRVIALDQDPQ 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGF 125 A++ Q D E+FS+ FS L + V G++FDLGVSS Q+D +RGF Sbjct: 61 AIASAQALADD--ERFSIIHTPFSDLAHIIEQQQLAHQVTGILFDLGVSSPQLDDAERGF 118 Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF + GPLDMRM S G +A+D ++ A D+T +L GEE+ A +IA AIV R+ P Sbjct: 119 SFMRDGPLDMRMDSSRGETAADWLSYAEEDDITYVLKTYGEERFARKIARAIVHDREQKP 178 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 F T+ L+ LI + V + ++ HPATRSFQA+RI VN E+E++ L ++ ALK G Sbjct: 179 FTRTRQLAELIGRLVPSKEKHK-HPATRSFQAIRIHVNRELEQIEDALEASLTALKEDGR 237 Query: 245 LIVVSFHSLEDRLVKKFFASRS--GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 L+V+SFHSLEDR+VK+F + S +V + + + ++ K + P+ ++ Sbjct: 238 LVVISFHSLEDRIVKRFMRTHSQPKQVPPGLPITEAELNKDRRLALESKAIKPSAAELEL 297 Query: 303 NRRSRSAKLRAGMRTV 318 N R+RS+ LR R Sbjct: 298 NPRARSSVLRIARRLA 313 >gi|167622387|ref|YP_001672681.1| S-adenosyl-methyltransferase MraW [Shewanella halifaxensis HAW-EB4] gi|262826525|sp|B0TQM9|RSMH_SHEHH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|167352409|gb|ABZ75022.1| S-adenosyl-methyltransferase MraW [Shewanella halifaxensis HAW-EB4] Length = 315 Score = 359 bits (922), Expect = 4e-97, Method: Composition-based stats. Identities = 119/308 (38%), Positives = 175/308 (56%), Gaps = 13/308 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 +H+ VLL + +A LN P + +D TFG GG+SR + +IA+DRDP A++ Sbjct: 6 EHLSVLLTETVAGLNIKPDGIYIDGTFGRGGHSRKVLEELGPNGRLIAIDRDPQAIAAA- 64 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E +D +F + F QL DYV D G +DGV+ D GVSS Q+D +RGFSF + G Sbjct: 65 EQFKD-DSRFQIVHGGFGQLADYVEDLGLKGKIDGVLLDFGVSSPQLDDAERGFSFLRDG 123 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S G +A+ + +A ++D+ + GEEK + IA I R+ APF T++ Sbjct: 124 PLDMRMDNSQGQTAAQWLARAEIEDMAWVFKTYGEEKNSRHIARCIAADREKAPFLRTKE 183 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ LI + + N+ HPATR FQA+RI++N+E+E++ Q L A L G L V+SF Sbjct: 184 LADLIARITKNKERNK-HPATRVFQAIRIYINSELEQIDQALEGALTVLAPEGRLSVISF 242 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI--TKKVVVPTQEDVAFNRRSRS 308 HSLEDR+VK+F S + + + + K + P+ E++ N R+RS Sbjct: 243 HSLEDRMVKRFIRRNSQGESVPHGLPITEEEINKSRKLKGVGKAIKPSAEEIERNARARS 302 Query: 309 AKLRAGMR 316 + LR R Sbjct: 303 SVLRIAQR 310 >gi|119773487|ref|YP_926227.1| S-adenosyl-methyltransferase MraW [Shewanella amazonensis SB2B] gi|262826482|sp|A1S2F1|RSMH_SHEAM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|119765987|gb|ABL98557.1| methyltransferase [Shewanella amazonensis SB2B] Length = 313 Score = 359 bits (921), Expect = 4e-97, Method: Composition-based stats. Identities = 114/307 (37%), Positives = 171/307 (55%), Gaps = 13/307 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H+ VLL + + LN + +D TFG GG+SR +IA+DRDP A+ ++ Sbjct: 7 HLSVLLAETVDGLNIRADGIYIDGTFGRGGHSREVLSRLGVDGRLIAIDRDPQAIKAAEQ 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 D +F + F QL +YV + G +DGV+ DLGVSS Q+D +RGFSF + GP Sbjct: 67 FAND--SRFQIVHGGFGQLANYVEELGLVGKIDGVLLDLGVSSPQLDDAERGFSFLRDGP 124 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G +A+ + +A ++D+ + GEE+ A IA I R+ PF T+ L Sbjct: 125 LDMRMDNSQGETAAQWLARAEIEDMAWVFKTYGEERNARHIARCIAADREKTPFTRTKQL 184 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI + + N+ HPATR FQA+RI++N+E+E++ Q L A K L G L ++SFH Sbjct: 185 ADLIARVAKSKERNK-HPATRVFQAIRIYINSELEQIDQALEGALKVLAPHGRLSIISFH 243 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI--TKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK+F S + + A +++ K + P+ ++ N R+RS+ Sbjct: 244 SLEDRIVKRFIRRHSQGEELPHGLPVTEAQLNKSRTLMPVGKAMKPSDVEIEQNARARSS 303 Query: 310 KLRAGMR 316 LR R Sbjct: 304 VLRVAER 310 >gi|294646197|ref|ZP_06723851.1| S-adenosyl-methyltransferase MraW [Bacteroides ovatus SD CC 2a] gi|292638415|gb|EFF56779.1| S-adenosyl-methyltransferase MraW [Bacteroides ovatus SD CC 2a] Length = 309 Score = 359 bits (921), Expect = 4e-97, Method: Composition-based stats. Identities = 107/304 (35%), Positives = 162/304 (53%), Gaps = 16/304 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HVPVLL++ + +N P +D TFG G+SR G ++ D+D A E Sbjct: 14 HVPVLLKESVDGMNIQPDGTYVDVTFGGAGHSREILSRLGEGGRLLGFDQDEDA-----E 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 F ++ F LQ+++ VD ++ DLGVSS D +RGFSF+ G L Sbjct: 69 RNIVNDPHFIFVRSNFRYLQNFLRYHDIEQVDAILADLGVSSHHFDDSERGFSFRFDGAL 128 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +GI+A+D+VN + L +L + GE K + ++A IVK R +T + Sbjct: 129 DMRMNKRAGITAADIVNTYEEERLANLLYLYGELKNSRKLASVIVKARSGQYIRTIGEFL 188 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ F + + FQALRI VN E+E L + L +A +ALK GG L+V+++HS Sbjct: 189 EIIKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLLAATEALKPGGRLVVITYHS 246 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK + + + A + P F+ + KV+VP + ++ N RSRSAKLR Sbjct: 247 LEDRMVKNIMKTGNVEGKAESDFFGNLQTP--FRLVNNKVIVPDEAEIERNPRSRSAKLR 304 Query: 313 AGMR 316 + Sbjct: 305 IAEK 308 >gi|160883877|ref|ZP_02064880.1| hypothetical protein BACOVA_01850 [Bacteroides ovatus ATCC 8483] gi|156110607|gb|EDO12352.1| hypothetical protein BACOVA_01850 [Bacteroides ovatus ATCC 8483] Length = 309 Score = 359 bits (921), Expect = 4e-97, Method: Composition-based stats. Identities = 106/304 (34%), Positives = 162/304 (53%), Gaps = 16/304 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HVPVLL++ + +N P +D TFG G+SR G ++ D+D A E Sbjct: 14 HVPVLLKESVDGMNIQPDGTYVDVTFGGAGHSREILSRLGEGGRLLGFDQDEDA-----E 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 F ++ F L +++ VD ++ DLGVSS D +RGFSF+ G L Sbjct: 69 RNIVNDTHFIFVRSNFRYLHNFLRYHNIEQVDAILADLGVSSHHFDDSERGFSFRFDGAL 128 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +G++A+D+VN + + L IL + GE K + ++A IVK R +T + Sbjct: 129 DMRMNKRAGMTAADIVNTYDEERLANILYLYGELKNSRKLASVIVKARSGQNIRTIGEFL 188 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ F + + FQALRI VN E+E L + L +A +ALK GG L+V+++HS Sbjct: 189 EVIKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLLAATEALKPGGRLVVITYHS 246 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK + + + A + P F+ + KV+VP + ++ N RSRSAKLR Sbjct: 247 LEDRMVKNIMKTGNVEGKAETDFFGNLQTP--FRLVNNKVIVPDEAEIERNPRSRSAKLR 304 Query: 313 AGMR 316 + Sbjct: 305 IAEK 308 >gi|257483456|ref|ZP_05637497.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289624974|ref|ZP_06457928.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647032|ref|ZP_06478375.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv. aesculi str. 2250] gi|298488527|ref|ZP_07006557.1| 16S rRNA m(4)C1402 methyltransferase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156868|gb|EFH97958.1| 16S rRNA m(4)C1402 methyltransferase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330868707|gb|EGH03416.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330987126|gb|EGH85229.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011570|gb|EGH91626.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 313 Score = 359 bits (921), Expect = 4e-97, Method: Composition-based stats. Identities = 114/307 (37%), Positives = 174/307 (56%), Gaps = 12/307 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H+ VLLE+ + L LD TFG GG+SR ++ D+DP A++ GQ Sbjct: 7 HITVLLEEAVEALAVRADGCYLDGTFGRGGHSRLILSQLGPDGRLLGFDKDPQAIATGQA 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F + Q +F++L ++G V G++ DLGVSS Q+D +RGFSF GP Sbjct: 67 -LAAEDGRFVIVQRSFAELGSEAQERGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDGP 125 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G+SA++ + A +++ R+ GEE+ A R+A+A+V RR+ PF+ T DL Sbjct: 126 LDMRMDPTRGVSAAEFIATAPAEEIARVFKEYGEERFAKRMANAVVARREVQPFERTADL 185 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +++ + + +PATR+FQ LRI VNNE+ +L GL +A AL+ GG L+V+SFH Sbjct: 186 AEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLVVISFH 244 Query: 252 SLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK F + G+ + +P P + I K + + N RSRSA Sbjct: 245 SLEDRIVKLFMRKLAKGEADNMPRNLPIQFKPFEPKIKIHGKAQFASDTETKANPRSRSA 304 Query: 310 KLRAGMR 316 +R + Sbjct: 305 VMRVAEK 311 >gi|192361777|ref|YP_001983393.1| S-adenosyl-methyltransferase MraW [Cellvibrio japonicus Ueda107] gi|263445770|sp|B3PCM8|RSMH_CELJU RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|190687942|gb|ACE85620.1| S-adenosyl-methyltransferase MraW [Cellvibrio japonicus Ueda107] Length = 309 Score = 359 bits (921), Expect = 4e-97, Method: Composition-based stats. Identities = 111/306 (36%), Positives = 168/306 (54%), Gaps = 10/306 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 HV VLL + + L P +D TFG GG+S + ++A+D+D A++ + Sbjct: 5 PHVTVLLGEAVEALVSNPEGTYIDGTFGRGGHSALILQHLASEGRLLAIDKDLAAIATAR 64 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E +F++ +F+ L++ ++G V G++ DLGVSS Q+D +RGFSF + G Sbjct: 65 EKFAT-DARFAIAHDSFASLKNLAAERGLVGRVQGILLDLGVSSPQLDEAERGFSFMQDG 123 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + G SA++ VN A+ ++ +L GEE+ A R+A AI+ RQ PF T Sbjct: 124 PLDMRMDQTRGPSAAEWVNTASEDEIAWVLREYGEERFAKRMARAIIAERQKRPFVRTGH 183 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ +I+ + + HPATR+FQA+RI VN E+E+L L A L GG L+V+SF Sbjct: 184 LAEVIKAANPAWEKGK-HPATRAFQAIRIQVNRELEDLEAVLAQAVDVLAPGGRLVVISF 242 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDRLVK+F + + + A K + + ++V N RSRSA Sbjct: 243 HSLEDRLVKRFIRQQEQGDPVPKGLPLREAQLNKTMRSLGKAMKASDQEVEANVRSRSAV 302 Query: 311 LRAGMR 316 +R + Sbjct: 303 MRVAEK 308 >gi|145600350|ref|YP_001164426.1| S-adenosyl-methyltransferase MraW [Yersinia pestis Pestoides F] gi|263504690|sp|A4TQ91|RSMH_YERPP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|145212046|gb|ABP41453.1| hypothetical protein YPDSF_3095 [Yersinia pestis Pestoides F] Length = 318 Score = 359 bits (921), Expect = 4e-97, Method: Composition-based stats. Identities = 120/314 (38%), Positives = 174/314 (55%), Gaps = 21/314 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H VLL++ + LN + +D TFG GG+SR +IA+DRDP A+ + Sbjct: 13 KHTSVLLDEAVKGLNIRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDRDPEAIEAAK 72 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +FS+ FS L YV D +DG++ DLGVSS Q+D +RGFSF + G Sbjct: 73 QI---TDPRFSIVHGPFSDLAHYVRDLDLVGRIDGILLDLGVSSPQLDDAERGFSFMRDG 129 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S G+SA++ + +A+ D+ +L GEE+ A R+A AIV+R + P T++ Sbjct: 130 PLDMRMDPSRGLSAAEWLMKASADDIAWVLKTFGEERFAKRLAKAIVERNLTQPMTRTKE 189 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ LI F HPATRSFQA+RI++N+E+EE+ + L A + L G L V+SF Sbjct: 190 LADLIANASPFR---DKHPATRSFQAIRIYINSELEEIERALDGAHEVLAPEGRLSVISF 246 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNRR 305 HSLEDR+VK F S + + A +S+ K ++P ++A N R Sbjct: 247 HSLEDRIVKNFIRHHSRGPQVPAGLPLTEAQLRSMGGRTLKSVGK--MMPGDAEIAENPR 304 Query: 306 SRSAKLRAGMRTVE 319 +RS+ LR R E Sbjct: 305 ARSSVLRFAERIGE 318 >gi|78046379|ref|YP_362554.1| S-adenosyl-methyltransferase MraW [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|88909226|sp|Q3BXF9|RSMH_XANC5 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|78034809|emb|CAJ22454.1| S-adenosyl-methyltransferase [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 337 Score = 359 bits (921), Expect = 4e-97, Method: Composition-based stats. Identities = 117/308 (37%), Positives = 171/308 (55%), Gaps = 7/308 (2%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69 + HVPVL +V+ L LD TFG GG++R + G ++ +D+DP Sbjct: 1 MSQPPAAHVPVLYTQVLDGLQVTENGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDPE 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 A++ E + S+ + +F+ L V VDG++ DLGVSS Q+D RGFSF K Sbjct: 61 AIAVA-EHSFGGDARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLDVAGRGFSFGK 119 Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM +G SA+ + QA+ +++ +L GEE+Q+ RIA AIV RR P T Sbjct: 120 DGPLDMRMDPDNGQSAAQWLAQASEREIADVLWTYGEERQSRRIARAIVARRAEQPLLRT 179 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ LI + +++ HPATRSFQA+RI +N E+ +L GL +A ALK GG L V+ Sbjct: 180 AQLADLIASVMPRG-DSKTHPATRSFQAIRIHINRELADLEAGLDAALDALKPGGRLAVI 238 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDR+VK+F A + + R + + Q ++ + ++ N R+RS Sbjct: 239 SFHSLEDRIVKQFMARYAKAPPSNRRLPEAQPFVPTLQLVS-GAIKADDAELNVNPRARS 297 Query: 309 AKLRAGMR 316 A LR + Sbjct: 298 AVLRVAEK 305 >gi|319424760|gb|ADV52834.1| S-adenosyl-methyltransferase MraW [Shewanella putrefaciens 200] Length = 313 Score = 359 bits (921), Expect = 5e-97, Method: Composition-based stats. Identities = 116/307 (37%), Positives = 171/307 (55%), Gaps = 13/307 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H+ VLL + + LN + +D TFG GG+SR + +IA+DRDP A+ ++ Sbjct: 7 HLSVLLAETVGGLNIKDDGIYIDGTFGRGGHSRQILQRLGDNGRLIAIDRDPQAIEAAKQ 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 D +F + F QL DYV D G +DGV+ DLGVSS Q+D +RGFSF + GP Sbjct: 67 FSDD--PRFQIVHGGFGQLADYVEDLGLVGKIDGVLLDLGVSSPQLDDAERGFSFLRDGP 124 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G +A+ + +A ++D+ + GEEK A IA I R PF T+DL Sbjct: 125 LDMRMDNSQGQTAAQWLARAEIEDMAWVFKTYGEEKNARHIARCIAADRDKTPFLRTKDL 184 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI + + N+ HPATR FQA+RI++N+E++++ Q L A L G L ++SFH Sbjct: 185 ADLIVRITKNKERNK-HPATRVFQAIRIYINSELDQIDQALEGALAVLAPQGRLSIISFH 243 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI--TKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK+F S + + + + K ++P+ E++ N R+RS+ Sbjct: 244 SLEDRIVKRFIRRHSQGESVPYGLPITEDQINKSRKLRAIGKAIMPSDEEIERNARARSS 303 Query: 310 KLRAGMR 316 LR R Sbjct: 304 VLRIAER 310 >gi|198274315|ref|ZP_03206847.1| hypothetical protein BACPLE_00459 [Bacteroides plebeius DSM 17135] gi|198272805|gb|EDY97074.1| hypothetical protein BACPLE_00459 [Bacteroides plebeius DSM 17135] Length = 304 Score = 359 bits (921), Expect = 5e-97, Method: Composition-based stats. Identities = 103/304 (33%), Positives = 169/304 (55%), Gaps = 16/304 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H+PVLL + I ++ G +D TFG GG+SR + S + + D+D A E Sbjct: 9 HIPVLLHESIEGMHLQSGGTYVDVTFGGGGHSREILRNMDDKSRLFSFDQDADA-----E 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++F+ ++ F L +++ GV D ++ DLGVSS D +RGFSF+ G L Sbjct: 64 RNIINDKRFTFVRSNFRYLHNFLRYYGVEEVDAILADLGVSSHHFDDSERGFSFRFDGKL 123 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +GI+A+D++N + L + + GE K + ++A +VK R P +T + Sbjct: 124 DMRMNKRAGITAADIINTYEEEKLADLFYLYGELKNSRKLAATLVKARAQKPVETIGEFI 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +++ + + + FQALRI VN E+E L + L +A +ALK GG L+V+++HS Sbjct: 184 EIVKPL--YGREREKKEMAKVFQALRIEVNQEMEALKEMLYAATEALKPGGRLVVITYHS 241 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK + + + A + + P F+ I KV++P+++++ N RSRSAKLR Sbjct: 242 LEDRMVKNIMKTGNIEGKAKQDFFGNVETP--FKLINNKVIIPSEDEIQRNPRSRSAKLR 299 Query: 313 AGMR 316 + Sbjct: 300 IAEK 303 >gi|24375712|ref|NP_719755.1| S-adenosyl-methyltransferase MraW [Shewanella oneidensis MR-1] gi|30173050|sp|Q8E9P0|RSMH_SHEON RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|24350646|gb|AAN57199.1|AE015855_10 conserved hypothetical protein TIGR00006 [Shewanella oneidensis MR-1] Length = 313 Score = 359 bits (921), Expect = 5e-97, Method: Composition-based stats. Identities = 117/307 (38%), Positives = 172/307 (56%), Gaps = 13/307 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H+ VLLE+ + LN + +D TFG GG+SR + +IA+DRDP A+ ++ Sbjct: 7 HLSVLLEETVGGLNIKDDGIYIDGTFGRGGHSRQVLQRLGEKGRLIAIDRDPQAIEAAKQ 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 D +F + F QL DYV D G +DGV+ DLGVSS Q+D +RGFSF + GP Sbjct: 67 FADD--PRFQIVHGGFGQLADYVEDLGLVGKIDGVLLDLGVSSPQLDDAERGFSFLRDGP 124 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G +A+ + +A ++D+ + GEEK A IA I R PF T+DL Sbjct: 125 LDMRMDNSQGETAAQWLARAEIEDMAWVFKTYGEEKNARHIARCIAADRDKTPFLRTKDL 184 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI + + N+ HPATR FQA+RI++N+E++++ Q L A L G L ++SFH Sbjct: 185 ADLIARITKNKERNK-HPATRVFQAIRIYINSELDQIDQALEGALTVLAPQGRLSIISFH 243 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI--TKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK+F S + + + + K ++P+ E++ N R+RS+ Sbjct: 244 SLEDRIVKRFIRRHSQGESVPHGLPITEDQINKSRKLRAIGKAIMPSDEEIERNARARSS 303 Query: 310 KLRAGMR 316 LR R Sbjct: 304 VLRIAER 310 >gi|262831557|sp|A9M2I4|RSMH_NEIM0 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 328 Score = 359 bits (921), Expect = 5e-97, Method: Composition-based stats. Identities = 118/323 (36%), Positives = 173/323 (53%), Gaps = 13/323 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 MS A + H+ VLL + + L V +D TFG GG+SR +I D Sbjct: 1 MSGAESY---RHITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFD 57 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGD 122 +DP A++ +E + ++ + F+ Q + G VDG +FDLG+SS QID G Sbjct: 58 KDPQAIAVAEE-LARSDKRVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGS 116 Query: 123 RGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF+ PLDMRM G+SA++ + A+ +DL ++ GEE+ + +IA AIV +R Sbjct: 117 RGFSFRFDAPLDMRMDTMRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRA 176 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 +P TT+ L+ ++ + V + + PATR+FQA+RIF+N E+EE+ L LK Sbjct: 177 ESPIDTTRKLAQIVAQNVRTRERGQ-DPATRTFQAIRIFINRELEEVGAVLPQVMCRLKE 235 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDV 300 GG L V++FHSLEDR+VK+F S R A P I + + P + ++ Sbjct: 236 GGRLAVIAFHSLEDRIVKQFVKKYSQHAPLPRWAAVREADLPEPPLKIAGRALKPGEAEI 295 Query: 301 AFNRRSRSAKLRAGMRTVERSIE 323 A N R+RSA LR RT E Sbjct: 296 AANPRARSAVLRVAERTAGPIPE 318 >gi|330859314|emb|CBX69661.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia enterocolitica W22703] Length = 320 Score = 359 bits (921), Expect = 5e-97, Method: Composition-based stats. Identities = 120/314 (38%), Positives = 176/314 (56%), Gaps = 19/314 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H VLL++ + LN + +D TFG GG+SR +IA+DRDP A+ + Sbjct: 13 KHTSVLLDEAVNGLNIRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDRDPQAIEAAK 72 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +FS+ FS L YV + ++GV+ DLGVSS Q+D +RGFSF + G Sbjct: 73 SI---TDPRFSIVHGPFSDLAHYVRELDLVGRINGVLLDLGVSSPQLDDPERGFSFMRDG 129 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + GISA++ + +A+ D+ +L GEE+ A R+A AIV+R + P T++ Sbjct: 130 PLDMRMDPTRGISAAEWLMKASADDIAWVLKTFGEERFAKRLAKAIVERNLTQPMTRTKE 189 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ LI F + ++ HPATRSFQA+RI++N+E+EE+ + L A + L G L V+SF Sbjct: 190 LADLIANASPFREKHK-HPATRSFQAIRIYINSELEEIERALDGALEVLAPEGRLSVISF 248 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNRR 305 HSLEDR+VK F S + + A +S+ K ++P +VA N R Sbjct: 249 HSLEDRIVKNFIRHHSRGPQVPAGLPLTEAQLRSMGGRTLKSVGK--MMPPDAEVAENPR 306 Query: 306 SRSAKLRAGMRTVE 319 +RS+ LR R E Sbjct: 307 ARSSVLRFAERIKE 320 >gi|88799431|ref|ZP_01115008.1| S-adenosyl-methyltransferase [Reinekea sp. MED297] gi|88777741|gb|EAR08939.1| S-adenosyl-methyltransferase [Reinekea sp. MED297] Length = 315 Score = 359 bits (921), Expect = 5e-97, Method: Composition-based stats. Identities = 115/316 (36%), Positives = 172/316 (54%), Gaps = 12/316 (3%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 MS H VLL + + ++ V +D TFG GG+SR + +I D Sbjct: 1 MSLPSDQPYS-HETVLLHETVEAVDVGS-GVYVDGTFGRGGHSRLLLSRLDADARLIVFD 58 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCG 121 +DP A++ E + + ++ Q F++L + G V G++ DLGVSS Q+D Sbjct: 59 KDPLAIATANE-LAAEDSRVTVVQRGFAELSSVLKQAGLMGQVSGILLDLGVSSPQLDDA 117 Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF+ GPLDMRM+ SG SA+ + + + K+L +L G+E+ + RIA AIV R Sbjct: 118 ERGFSFRADGPLDMRMNPESGESAAQWIARVSEKELADVLFQYGDERFSRRIARAIVTAR 177 Query: 181 QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 Q P + T L+ +I+ + +++ HPAT+SFQA+RI VN E++EL L ++ ALK Sbjct: 178 QKQPIERTLQLAEIIKTA-HPKWDHKKHPATKSFQAIRIAVNGELDELDAVLSASVGALK 236 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300 GG L V+SFHSLEDR VK+F ++ + + V K + + E+V Sbjct: 237 PGGRLAVISFHSLEDRAVKQFIKLQAKGPELPPGLPVRDEDIHVTMKAVGKAIKASAEEV 296 Query: 301 AFNRRSRSAKLRAGMR 316 A N RSRSA LR + Sbjct: 297 AVNVRSRSAVLRVAEK 312 >gi|290476461|ref|YP_003469366.1| S-adenosyl-dependent methyl transferase [Xenorhabdus bovienii SS-2004] gi|289175799|emb|CBJ82602.1| S-adenosyl-dependent methyl transferase [Xenorhabdus bovienii SS-2004] Length = 314 Score = 359 bits (921), Expect = 5e-97, Method: Composition-based stats. Identities = 118/320 (36%), Positives = 178/320 (55%), Gaps = 19/320 (5%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPF 69 + ++ H VLL++ + LN + +D TFG GG+SR +IA+DRDP Sbjct: 1 MANSHYKHTSVLLDEAVNGLNIRENGIYIDGTFGRGGHSRLILSQLGADGRLIAIDRDPQ 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGF 125 A+ + +FS+ FS+L Y+ + G +DGV+ DLGVSS Q+D +RGF Sbjct: 61 AIEAAK---AITDPRFSITHGPFSELATYIEEAGLVGKIDGVLLDLGVSSPQLDDPERGF 117 Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF + GPLDMRM + G SA++ + +A D+ +L GEE+ A RIA AIV R Q Sbjct: 118 SFMRDGPLDMRMDPTRGQSATEWLMKAEADDIAWVLKTFGEERFAKRIARAIVARNQEGQ 177 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 T++L+ LI + + ++ HPATRSFQA+RI++N+E+EE+ + L A + L G Sbjct: 178 ITRTRELAELIAQASPVKEKHK-HPATRSFQAIRIYINSELEEIERALNGALQVLAPQGR 236 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQED 299 L V+SFHSLEDR+VK+F S + + +SI K + P++++ Sbjct: 237 LSVISFHSLEDRIVKRFIRQHSRGPQVPAGLPLTETQLKAQGGRSLKSIGK--LKPSEDE 294 Query: 300 VAFNRRSRSAKLRAGMRTVE 319 V N R+RS+ LR + E Sbjct: 295 VVINPRARSSVLRFAEKAGE 314 >gi|326693783|ref|ZP_08230788.1| 16S rRNA m(4)C1402 methyltranserfase [Leuconostoc argentinum KCTC 3773] Length = 313 Score = 358 bits (920), Expect = 5e-97, Method: Composition-based stats. Identities = 109/311 (35%), Positives = 167/311 (53%), Gaps = 10/311 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73 + +HV VLL + +ALL+ P + +DAT G GG++ K + + D+D A+ Sbjct: 2 SEFEHVTVLLHEAVALLDIKPDGLYVDATLGGGGHTGEILKQLTTGTLYSFDQDDTAIQY 61 Query: 74 GQETMRD--YKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQ 128 + D + L F L+ + ++GV DG+V+DLGVSS+Q D G RGFS+ Sbjct: 62 NTKQYADEIAAGKLVLIHQNFRTLKSALAERGVTAVDGIVYDLGVSSVQFDDGQRGFSYN 121 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 LDMRM ++A +VN DL RIL GE++ +IA I + R++ P T Sbjct: 122 YDAELDMRMDQRQTLTAKTIVNDWPFNDLLRILSRYGEDRFPKQIARKIEQHRENGPINT 181 Query: 188 TQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T +L +I++ + ++ HPA R+FQALRI VN+E+ L L A L G + Sbjct: 182 TFELVDIIKEAIPAPARRKGGHPAKRTFQALRIAVNDELGALEDSLTQAIDLLAPDGRIS 241 Query: 247 VVSFHSLEDRLVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V++F SLEDRLVK+ F ++ + + A + +T+K ++P Q+++A N R Sbjct: 242 VITFQSLEDRLVKQMFREKTTAPELPAGLPVLPGQFEADYTLLTRKPILPGQDEMADNHR 301 Query: 306 SRSAKLRAGMR 316 S SAKLR R Sbjct: 302 SESAKLRGIAR 312 >gi|251792015|ref|YP_003006735.1| S-adenosyl-methyltransferase MraW [Aggregatibacter aphrophilus NJ8700] gi|263446623|sp|C6AKG2|RSMH_AGGAN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|247533402|gb|ACS96648.1| S-adenosyl-methyltransferase MraW [Aggregatibacter aphrophilus NJ8700] Length = 322 Score = 358 bits (920), Expect = 6e-97, Method: Composition-based stats. Identities = 127/324 (39%), Positives = 176/324 (54%), Gaps = 20/324 (6%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M+ + +H VLL + + L + +D TFG GG+SR +IA+D Sbjct: 1 MTHLNAFSSVEHSTVLLHETVDGLALKENGIYIDGTFGRGGHSRLILSKLSANGKLIAID 60 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCG 121 RDP AV+ Q+ +F + TFS++ +G +DG++ DLGVSS Q+D Sbjct: 61 RDPKAVAEAQKI---QDPRFQIEHNTFSEILSICEKRGLVGKIDGILLDLGVSSPQLDDA 117 Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 RGFSF K GPLDMRM S GISA++ + Q + +DL +L GEE+ A +IA AIV Sbjct: 118 ARGFSFMKDGPLDMRMDDSKGISAAEWLQQVSEQDLAWVLKTFGEERFAKKIAKAIVNYN 177 Query: 181 QSAP------FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234 +SA T L+ LI TV F K+ HPATRSFQA+RIF+N E++EL + L+S Sbjct: 178 KSAVQNGSEFLTRTLQLAELIAHTVPF-KDKHKHPATRSFQAIRIFINAELDELEKVLQS 236 Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ--SITKKV 292 A L G L V+SFHSLEDR+VK F +S + + Q + K Sbjct: 237 ALTVLAPAGRLSVISFHSLEDRMVKHFMRKQSQGREIPKGLPLREDQIQRNQTLKVIGKA 296 Query: 293 VVPTQEDVAFNRRSRSAKLRAGMR 316 ++PT ++A N R+RSA LR R Sbjct: 297 IMPTDAEIAQNPRARSAVLRVAER 320 >gi|284008372|emb|CBA74773.1| S-adenosyl-methyltransferase [Arsenophonus nasoniae] Length = 393 Score = 358 bits (920), Expect = 6e-97, Method: Composition-based stats. Identities = 118/319 (36%), Positives = 182/319 (57%), Gaps = 21/319 (6%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPF 69 + + H+ VLL++ + LN + +D TFG GG+S+ +IA+DRDP Sbjct: 77 MADSRFKHISVLLDEAVNGLNIKANGIYVDGTFGRGGHSQLILSRLGSKGRLIAIDRDPH 136 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGF 125 AV+ +E + D +FS+ +FSQLQ ++ +G +DGV+ DLGVSS Q+D +RGF Sbjct: 137 AVAAAEEMITD--NRFSIKHGSFSQLQTFIAQEGLVGKIDGVLLDLGVSSPQLDDPERGF 194 Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR---Q 181 SF + GPLDMRM + G SA+ + +A+ D+ +L GEE+ A RIA AIV R Sbjct: 195 SFMRDGPLDMRMDPTTGQSAAQWLMKADEADIAWVLKTYGEERFAKRIAKAIVARNHHSA 254 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 P T+ L+ LI + F + ++ HPATRSFQA+RI++N+E+EE+A+ L + L Sbjct: 255 EEPLTRTKQLAELIAQVSPFKEKHK-HPATRSFQAIRIYINSELEEIAKALEGSLNILAP 313 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPT 296 G L ++SFHSLEDRLVK+F S + ++ + + + K + PT Sbjct: 314 QGRLSIISFHSLEDRLVKRFIREHSRGPKVPVGLPLTDVQLKAIGSPILKVLGK--MKPT 371 Query: 297 QEDVAFNRRSRSAKLRAGM 315 + ++ N R+RS+ +R Sbjct: 372 EREIIENPRARSSVVRFAE 390 >gi|260172400|ref|ZP_05758812.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. D2] Length = 304 Score = 358 bits (920), Expect = 6e-97, Method: Composition-based stats. Identities = 105/304 (34%), Positives = 162/304 (53%), Gaps = 16/304 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HVPVLL++ + +N P +D TFG G+SR G ++ D+D A E Sbjct: 9 HVPVLLKESVDGMNIQPDGTYVDVTFGGAGHSREILSRLGEGGRLLGFDQDEDA-----E 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 F ++ F L +++ VD ++ DLGVSS D +RGFSF+ G L Sbjct: 64 RNIVNDTHFIFVRSNFRYLHNFLRYHNIEQVDAILADLGVSSHHFDDSERGFSFRFDGAL 123 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +G++A+D+VN + + L IL + GE K + ++A IVK R +T + Sbjct: 124 DMRMNKRAGMTAADIVNTYDEERLANILYLYGELKNSRKLASVIVKARSGQNIRTIGEFL 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +++ F + + FQALRI VN E+E L + L +A +ALK GG L+V+++HS Sbjct: 184 EVVKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLLAATEALKPGGRLVVITYHS 241 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK + + + A + P F+ + KV+VP + ++ N RSRSAKLR Sbjct: 242 LEDRMVKNIMKTGNVEGKAETDFFGNLQTP--FRLVNNKVIVPDEAEIERNPRSRSAKLR 299 Query: 313 AGMR 316 + Sbjct: 300 IAEK 303 >gi|170728860|ref|YP_001762886.1| S-adenosyl-methyltransferase MraW [Shewanella woodyi ATCC 51908] gi|262826580|sp|B1KKY5|RSMH_SHEWM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|169814207|gb|ACA88791.1| S-adenosyl-methyltransferase MraW [Shewanella woodyi ATCC 51908] Length = 313 Score = 358 bits (920), Expect = 6e-97, Method: Composition-based stats. Identities = 120/307 (39%), Positives = 173/307 (56%), Gaps = 13/307 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H+ VLL + +A LN + +D TFG GG+SR K +IA+DRDP A+ ++ Sbjct: 7 HLSVLLTETVAGLNIKEDGIYIDGTFGRGGHSREVLKHLGENGRLIAIDRDPQAIEAAKQ 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 D +FS+ F QL YV + G +DGV+ D GVSS Q+D +RGFSF + GP Sbjct: 67 FADDA--RFSIVHGGFGQLATYVEELGLKGKIDGVLLDFGVSSPQLDDAERGFSFLRDGP 124 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G +A+D + +A V+D+ + GEEK + IA I R+ PF T++L Sbjct: 125 LDMRMDNSQGETAADWLARAEVEDMAWVFKTYGEEKNSRHIARCIAADREKTPFLRTKEL 184 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI + + SK HPATR FQA+RI++N+E+E++ Q L A L G L V+SFH Sbjct: 185 ADLIAR-ISKSKERNKHPATRVFQAIRIYINSELEQIDQALEGALTVLAPQGRLSVISFH 243 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI--TKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK+F S + + A + + K + P+ E++ N R+RS+ Sbjct: 244 SLEDRMVKRFIRRHSQGESVPHGLPITEAEINKTRLLKGVGKAIKPSDEEIERNTRARSS 303 Query: 310 KLRAGMR 316 LR R Sbjct: 304 VLRVAQR 310 >gi|298531025|ref|ZP_07018426.1| S-adenosyl-methyltransferase MraW [Desulfonatronospira thiodismutans ASO3-1] gi|298509048|gb|EFI32953.1| S-adenosyl-methyltransferase MraW [Desulfonatronospira thiodismutans ASO3-1] Length = 319 Score = 358 bits (920), Expect = 6e-97, Method: Composition-based stats. Identities = 115/309 (37%), Positives = 178/309 (57%), Gaps = 11/309 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H PV+LEKV+ LL PAPG LD T G GG+S + K +++ +D D A+ E Sbjct: 11 HQPVMLEKVLELLAPAPGGRYLDGTLGLGGHSLAILKACKGECSILGMDMDQEALELVAE 70 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + + + Q F Q+Y+ + G+DG + DLG+SS+Q+D ++GFSF GPL Sbjct: 71 NLEEQQGGLHMVQDAFHNFQEYLQELQWPGLDGALLDLGMSSLQLDKKEKGFSFIHDGPL 130 Query: 134 DMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 DMRM + AS +V A+ L +I+ LGEE A RIA AI++ R+ +P TT +L Sbjct: 131 DMRMGLAQGFPPASSLVQNASFSRLKQIIYELGEEPMAPRIARAIIQAREKSPINTTLEL 190 Query: 192 SSLIQKTVYFSKNN--RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 + ++++ + R HPAT++FQALR+ N E+E L L L+ G L+V+S Sbjct: 191 ARIVEQAYPAQRRRAARNHPATKTFQALRMATNKELESLQDFLEKIAPWLRPGARLVVIS 250 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK++ ++ + + S +H + +T+K + ++ +++ N RSRS Sbjct: 251 FHSLEDRMVKQYLRRQASDCICPPRSPVCSCSHRKTLEILTRKPLTASEREISRNPRSRS 310 Query: 309 AKLRAGMRT 317 AKLRA R Sbjct: 311 AKLRAAQRV 319 >gi|71275129|ref|ZP_00651416.1| methyltransferase [Xylella fastidiosa Dixon] gi|71900702|ref|ZP_00682825.1| methyltransferase [Xylella fastidiosa Ann-1] gi|170731118|ref|YP_001776551.1| S-adenosyl-methyltransferase MraW [Xylella fastidiosa M12] gi|71163938|gb|EAO13653.1| methyltransferase [Xylella fastidiosa Dixon] gi|71729523|gb|EAO31631.1| methyltransferase [Xylella fastidiosa Ann-1] gi|167965911|gb|ACA12921.1| S-adenosyl-methyltransferase [Xylella fastidiosa M12] Length = 340 Score = 358 bits (920), Expect = 6e-97, Method: Composition-based stats. Identities = 115/310 (37%), Positives = 172/310 (55%), Gaps = 10/310 (3%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAV 71 H HVPVL + + L LD TFG GG++R + G ++ +D+DP A+ Sbjct: 25 HLSMTHVPVLYTQAMEGLRVVENGTYLDGTFGRGGHARGVLQQLGPGGRLLVMDKDPEAI 84 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + E + + + +F+ L + +DGV+FDLGVSS Q+D +RGFSF K G Sbjct: 85 AMA-ERVFSCDPRVVIRHGSFALLAQLAAPQSLDGVLFDLGVSSPQLDVPERGFSFAKDG 143 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM G SA+ + + + +++ +L GEEKQ+ RIA AIV R + P T Sbjct: 144 PLDMRMDPEMGESAAQWLARVSEREIAEVLWTYGEEKQSRRIARAIVAYRANQPLLRTVQ 203 Query: 191 LSSLIQKTVYFSK----NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 L+ LI + +K +RIHPATRSFQ +RI VN E+ +L GL +A AL+ GG L+ Sbjct: 204 LAELIASVMLRTKSGACKSRIHPATRSFQGIRIHVNRELVDLEVGLEAALAALRPGGRLV 263 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+SFHSLEDR+VK+F + + R + + + I + + ++++ N R+ Sbjct: 264 VISFHSLEDRIVKQFISRHAKVPPTNRRLPEVQTFVPLLRMIGR-AIKADEDELEVNPRA 322 Query: 307 RSAKLRAGMR 316 RSA LR + Sbjct: 323 RSAVLRVAEK 332 >gi|315920696|ref|ZP_07916936.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313694571|gb|EFS31406.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 309 Score = 358 bits (920), Expect = 6e-97, Method: Composition-based stats. Identities = 105/304 (34%), Positives = 162/304 (53%), Gaps = 16/304 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HVPVLL++ + +N P +D TFG G+SR G ++ D+D A E Sbjct: 14 HVPVLLKESVDGMNIQPDGTYVDVTFGGAGHSREILSRLGEGGRLLGFDQDEDA-----E 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 F ++ F L +++ VD ++ DLGVSS D +RGFSF+ G L Sbjct: 69 RNIVNDTHFIFVRSNFRYLHNFLRYHNIEQVDAILADLGVSSHHFDDSERGFSFRFDGAL 128 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +G++A+D+VN + + L IL + GE K + ++A IVK R +T + Sbjct: 129 DMRMNKRAGMTAADIVNTYDEERLANILYLYGELKNSRKLASVIVKARSGQNIRTIGEFL 188 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +++ F + + FQALRI VN E+E L + L +A +ALK GG L+V+++HS Sbjct: 189 EVVKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLLAATEALKPGGRLVVITYHS 246 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK + + + A + P F+ + KV+VP + ++ N RSRSAKLR Sbjct: 247 LEDRMVKNIMKTGNVEGKAETDFFGNLQTP--FRLVNNKVIVPDEAEIERNPRSRSAKLR 304 Query: 313 AGMR 316 + Sbjct: 305 IAEK 308 >gi|28199742|ref|NP_780056.1| S-adenosyl-methyltransferase MraW [Xylella fastidiosa Temecula1] gi|28057863|gb|AAO29705.1| conserved hypothetical protein [Xylella fastidiosa Temecula1] Length = 322 Score = 358 bits (920), Expect = 6e-97, Method: Composition-based stats. Identities = 117/316 (37%), Positives = 172/316 (54%), Gaps = 10/316 (3%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65 M H HVPVL + + L LD TFG GG++R + G ++ +D Sbjct: 1 MDGLAPHLSMTHVPVLYTQAMEGLRVVENGTYLDGTFGRGGHARGVLQQLGPGGRLLVMD 60 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125 +DP A++ E + + +F+ L + +DGV+FDLGVSS Q+D +RGF Sbjct: 61 KDPEAIAMA-ERAFSCDPRVVIRHGSFALLAQLAAPQSLDGVLFDLGVSSPQLDVPERGF 119 Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF K GPLDMRM G SA+ + + + +++ +L GEEKQ+ RIA AIV R + P Sbjct: 120 SFAKDGPLDMRMDPEMGESAAQWLARVSEREIADVLWTYGEEKQSRRIARAIVAYRANQP 179 Query: 185 FQTTQDLSSLIQKTVYFSK----NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 T L+ LI + +K +RIHPATRSFQ +RI VN E+ +L GL +A AL+ Sbjct: 180 LLRTVQLAELIASVMLRTKFGACKSRIHPATRSFQGIRIHVNRELVDLEVGLEAALAALR 239 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300 GG L+V+SFHSLEDR+VK+F + S R + + + I + + ++++ Sbjct: 240 PGGRLVVISFHSLEDRIVKQFISRHSKVPPTNRRLPEVQTFVPLLRMIGR-AIKADEDEL 298 Query: 301 AFNRRSRSAKLRAGMR 316 N R+RSA LR + Sbjct: 299 EVNPRARSAVLRVAEK 314 >gi|296313573|ref|ZP_06863514.1| S-adenosyl-methyltransferase MraW [Neisseria polysaccharea ATCC 43768] gi|296839874|gb|EFH23812.1| S-adenosyl-methyltransferase MraW [Neisseria polysaccharea ATCC 43768] Length = 319 Score = 358 bits (920), Expect = 6e-97, Method: Composition-based stats. Identities = 115/312 (36%), Positives = 170/312 (54%), Gaps = 10/312 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H+ VLL + + L + +D TFG GG+SR +I D+DP A++ +E Sbjct: 9 HITVLLNEAVDALAVREDGIYVDGTFGRGGHSRLILSRLGDAGRLIVFDKDPQAIAVAEE 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + ++ + F Q + D G VDG +FDLG+SS QID G RGFSF+ PL Sbjct: 69 -LARSDKRVGVVHGGFVSFQTALDDLGIGKVDGALFDLGISSPQIDDGSRGFSFRFDAPL 127 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + G+SA++ + A+ +DL ++ GEE+ + +IA AIV +R +P TT+ L+ Sbjct: 128 DMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRAESPIDTTRKLA 187 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++ + V + + PATR+FQA+RIF+N E+EE+ L LK GG L V++FHS Sbjct: 188 QIVAQNVRTRERGQ-DPATRTFQAVRIFINRELEEVGAVLPQVMCRLKQGGRLAVIAFHS 246 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK+F S R A P I + + P + ++A N R+RSA L Sbjct: 247 LEDRIVKQFVKKYSQHAPLPRWAAVREADLPEPPLKIVGRALKPGEAEIAANPRARSAVL 306 Query: 312 RAGMRTVERSIE 323 R RT E Sbjct: 307 RVAERTAGPIPE 318 >gi|254673389|emb|CBA08689.1| S-adenosyl-methyltransferase [Neisseria meningitidis alpha275] gi|319411060|emb|CBY91460.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis WUE 2594] Length = 328 Score = 358 bits (920), Expect = 6e-97, Method: Composition-based stats. Identities = 117/318 (36%), Positives = 174/318 (54%), Gaps = 13/318 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 MS A + H+ VLL++ + L V +D TFG GG+SR +I D Sbjct: 1 MSGAESY---RHITVLLDEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFD 57 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGD 122 +DP A++ +E + ++ + F+ Q + G VDG +FDLG+SS QID G Sbjct: 58 KDPQAIAVAEE-LARSDKRVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGS 116 Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF+ PLDMRM + G+SA++ + A+ +DL ++ GEE+ + +IA AIV +R Sbjct: 117 RGFSFRFDAPLDMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRA 176 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 +P TT+ L+ ++ + V + + PATR+FQA+RIF+N E+EE+ L LK Sbjct: 177 ESPIDTTRKLAQIVAQNVRTRERGQ-DPATRTFQAVRIFINRELEEVGAVLPQVMCRLKE 235 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDV 300 GG L V++FHSLEDR+VK+F S R A P I + + P + ++ Sbjct: 236 GGRLAVIAFHSLEDRIVKQFVKKYSQHAPLPRWAAVREADLPEPPLKIVGRALKPGEAEI 295 Query: 301 AFNRRSRSAKLRAGMRTV 318 A N R+RSA LR RT Sbjct: 296 AANPRARSAVLRVAERTA 313 >gi|182682489|ref|YP_001830649.1| S-adenosyl-methyltransferase MraW [Xylella fastidiosa M23] gi|182632599|gb|ACB93375.1| S-adenosyl-methyltransferase MraW [Xylella fastidiosa M23] gi|307578769|gb|ADN62738.1| S-adenosyl-methyltransferase MraW [Xylella fastidiosa subsp. fastidiosa GB514] Length = 328 Score = 358 bits (920), Expect = 6e-97, Method: Composition-based stats. Identities = 116/310 (37%), Positives = 171/310 (55%), Gaps = 10/310 (3%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAV 71 H HVPVL + + L LD TFG GG++R + G ++ +D+DP A+ Sbjct: 13 HLSMTHVPVLYTQAMEGLRVVENGTYLDGTFGRGGHARGVLQQLGPGGRLLVMDKDPEAI 72 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + E + + +F+ L + +DGV+FDLGVSS Q+D +RGFSF K G Sbjct: 73 AMA-ERAFSCDPRVVIRHGSFALLAQLAAPQSLDGVLFDLGVSSPQLDVPERGFSFAKDG 131 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM G SA+ + + + +++ +L GEEKQ+ RIA AIV R + P T Sbjct: 132 PLDMRMDPEMGESAAQWLARVSEREIADVLWTYGEEKQSRRIARAIVAYRANQPLLRTVQ 191 Query: 191 LSSLIQKTVYFSK----NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 L+ LI + +K +RIHPATRSFQ +RI VN E+ +L GL +A AL+ GG L+ Sbjct: 192 LAELIASVMLRTKFGACKSRIHPATRSFQGIRIHVNRELVDLEVGLEAALAALRPGGRLV 251 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+SFHSLEDR+VK+F + S R + + + I + + ++++ N R+ Sbjct: 252 VISFHSLEDRIVKQFISRHSKVPPTNRRLPEVQTFVPLLRMIGR-AIKADEDELEVNPRA 310 Query: 307 RSAKLRAGMR 316 RSA LR + Sbjct: 311 RSAVLRVAEK 320 >gi|157828717|ref|YP_001494959.1| S-adenosyl-methyltransferase MraW [Rickettsia rickettsii str. 'Sheila Smith'] gi|157801198|gb|ABV76451.1| S-adenosyl-methyltransferase MraW [Rickettsia rickettsii str. 'Sheila Smith'] Length = 299 Score = 358 bits (920), Expect = 6e-97, Method: Composition-based stats. Identities = 125/300 (41%), Positives = 181/300 (60%), Gaps = 5/300 (1%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETMRDYK 82 +L +++ L+P G+ LD TFGAGGYS++ + V ALDRDP + +E ++Y Sbjct: 1 MLNEMLEALSPKAGESYLDCTFGAGGYSKAILESCNCYVTALDRDPNVIKRAEEIQQNYG 60 Query: 83 EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI 142 E+F + F+ + +K DG+V DLGVSSMQ+D DRGFSF GPLDMRMS G+ Sbjct: 61 ERFDFVETNFADSFAKLKEKKFDGIVLDLGVSSMQLDIADRGFSFLHDGPLDMRMSGQGL 120 Query: 143 SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS 202 SA + VN A K+L ++ G+E + RIA IV+ R++A +T L+ +++ ++ F Sbjct: 121 SAEEFVNAAEEKELADVIYKYGDESFSRRIAKRIVEYRKTARIDSTGKLAEIVRSSIGFR 180 Query: 203 KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF 262 K +I PAT++FQA+RI+VN+E+ EL Q L + + LK G L+VVSFHSLEDR+VK FF Sbjct: 181 K-GKIDPATKTFQAIRIYVNDELGELEQFLVNVKNILKKDGRLVVVSFHSLEDRIVKNFF 239 Query: 263 ASRSGKVMAVRHMIPSNA---HPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319 S K + + + IT K + P+ ++V N R+RSAKLRA E Sbjct: 240 KENSEKPVVRSKYAKDDMTIDPNKWLKIITNKALAPSDKEVGLNIRARSAKLRAAKAIYE 299 >gi|260642625|ref|ZP_05416656.2| S-adenosyl-methyltransferase MraW [Bacteroides finegoldii DSM 17565] gi|260621294|gb|EEX44165.1| S-adenosyl-methyltransferase MraW [Bacteroides finegoldii DSM 17565] Length = 309 Score = 358 bits (920), Expect = 7e-97, Method: Composition-based stats. Identities = 105/304 (34%), Positives = 160/304 (52%), Gaps = 16/304 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HVPVLL++ + +N P +D TFG G+SR G ++ D+D A E Sbjct: 14 HVPVLLKESVDGMNIRPDGTYVDVTFGGAGHSREILSRLGEGGRLLGFDQDEDA-----E 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 F ++ F L +++ VD ++ DLGVSS D +RGFSF+ G L Sbjct: 69 RNIVDDPHFIFVRSNFRYLHNFLRYHDIEQVDAILADLGVSSHHFDDSERGFSFRFDGDL 128 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +G++A+D+VN + L I + GE K + ++A IVK R +T + Sbjct: 129 DMRMNKRAGLTAADIVNTYEEERLANIFYLYGELKNSRKLASVIVKARNGQAIRTIGEFL 188 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ F + + FQALRI VN E+E L + L +A +ALK GG L+V+++HS Sbjct: 189 EVIKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLLAATEALKPGGRLVVITYHS 246 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK + + + A + P F+ + KV+VP + ++ N RSRSAKLR Sbjct: 247 LEDRMVKNIMKTGNVEGKAESDFFGNLNTP--FRLVNNKVIVPDETEIERNPRSRSAKLR 304 Query: 313 AGMR 316 + Sbjct: 305 IAEK 308 >gi|293370481|ref|ZP_06617034.1| S-adenosyl-methyltransferase MraW [Bacteroides ovatus SD CMC 3f] gi|299147137|ref|ZP_07040204.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 3_1_23] gi|292634473|gb|EFF53009.1| S-adenosyl-methyltransferase MraW [Bacteroides ovatus SD CMC 3f] gi|298515022|gb|EFI38904.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 3_1_23] Length = 304 Score = 358 bits (920), Expect = 7e-97, Method: Composition-based stats. Identities = 106/304 (34%), Positives = 162/304 (53%), Gaps = 16/304 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HVPVLL++ + +N P +D TFG G+SR G ++ D+D A E Sbjct: 9 HVPVLLKESVDGMNIQPDGTYVDVTFGGAGHSREILSRLGEGGRLLGFDQDEDA-----E 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 F ++ F L +++ VD ++ DLGVSS D +RGFSF+ G L Sbjct: 64 RNIVNDTHFIFVRSNFRYLHNFLRYHDIEQVDAILADLGVSSHHFDDSERGFSFRFDGAL 123 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +G++A+D+VN + + L IL + GE K + ++A IVK R +T + Sbjct: 124 DMRMNKRAGMTAADIVNTYDEERLANILYLYGELKNSRKLASVIVKARSGQNIRTIGEFL 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ F + + FQALRI VN E+E L + L +A +ALK GG L+V+++HS Sbjct: 184 EIIKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLLAATEALKPGGRLVVITYHS 241 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK + + + A + P F+ + KV+VP + ++ N RSRSAKLR Sbjct: 242 LEDRMVKNIMKTGNVEGKAETDFFGNLQTP--FRLVNNKVIVPDEAEIERNPRSRSAKLR 299 Query: 313 AGMR 316 + Sbjct: 300 IAEK 303 >gi|154494023|ref|ZP_02033343.1| hypothetical protein PARMER_03368 [Parabacteroides merdae ATCC 43184] gi|154086283|gb|EDN85328.1| hypothetical protein PARMER_03368 [Parabacteroides merdae ATCC 43184] Length = 308 Score = 358 bits (920), Expect = 7e-97, Method: Composition-based stats. Identities = 107/304 (35%), Positives = 162/304 (53%), Gaps = 17/304 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 HVPV+L + + L+ P V +D TFG GG+SR + D+D A E Sbjct: 9 HVPVMLHESLEGLDIQPSGVYVDVTFGGGGHSREILNRLNDEGELYGFDQDADA-----E 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +F ++ F L +++ GV DG++ DLGVSS D DRGFSF+ G Sbjct: 64 KNIPADSRFVFVRSNFRYLYNFMRYHGVAGEVDGLLADLGVSSHHFDDKDRGFSFRFDGA 123 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ +G +A+D+VN + L + + GE K A ++A +V+ R+ +T D Sbjct: 124 LDMRMNTRAGQTAADIVNTYTEEQLADLFYLYGELKVARKLASVLVRSREIKKIETIADF 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ K+ + FQALRI VN+E+ L + L+ + LK GG L+V+++H Sbjct: 184 LEVIKPFT--GKDKEKKFLAQVFQALRIEVNDEMRALREMLQQTLQVLKPGGRLVVITYH 241 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDRLVK F + + + A + + P F+ + KV+VP+ E++ N RSRSAKL Sbjct: 242 SLEDRLVKNFLKTGNFEGKAEQDFFGNIRSP--FRLVNNKVIVPSDEEIERNPRSRSAKL 299 Query: 312 RAGM 315 R Sbjct: 300 RIAE 303 >gi|156935398|ref|YP_001439314.1| S-adenosyl-methyltransferase MraW [Cronobacter sakazakii ATCC BAA-894] gi|263447014|sp|A7MIE1|RSMH_ENTS8 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|156533652|gb|ABU78478.1| hypothetical protein ESA_03256 [Cronobacter sakazakii ATCC BAA-894] Length = 313 Score = 358 bits (920), Expect = 7e-97, Method: Composition-based stats. Identities = 121/312 (38%), Positives = 179/312 (57%), Gaps = 19/312 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ Sbjct: 6 KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEQGRLLAIDRDPQAIAAAA 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +FS+ FS L DYV ++ +DG++ DLGVSS Q+D +RGFSF + G Sbjct: 66 ---AIDDPRFSIIHGPFSALGDYVRERELQGKIDGILLDLGVSSPQLDDPERGFSFMRDG 122 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + G SA++ + A D+ +L GEE+ A RIA AIV+R + P T++ Sbjct: 123 PLDMRMDPTRGQSAAEWLRNAEEADIAWVLKTFGEERFAKRIARAIVERNRELPMTRTKE 182 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+ A + L GG L V+SF Sbjct: 183 LAEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKGAVEVLAPGGRLSVISF 241 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNRR 305 HSLEDRLVK+F +S + + A +++ K ++P + +VA N R Sbjct: 242 HSLEDRLVKRFMREQSRGPQVPAGLPMTEAQLQKLGGRELRALGK--LMPGEAEVAENPR 299 Query: 306 SRSAKLRAGMRT 317 +RS+ LR RT Sbjct: 300 ARSSVLRVAERT 311 >gi|325142966|gb|EGC65323.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis 961-5945] Length = 328 Score = 358 bits (920), Expect = 7e-97, Method: Composition-based stats. Identities = 117/318 (36%), Positives = 174/318 (54%), Gaps = 13/318 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 MS A + H+ VLL + + L V +D TFG GG+SR +I D Sbjct: 1 MSGAESY---RHITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFD 57 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGD 122 +DP A++ +E + ++ + F+ Q + G VDG +FDLG+SS QID G Sbjct: 58 KDPQAIAVAEE-LARSDKRVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGS 116 Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF+ PLDMRM + G+SA++ + A+ +DL ++ GEE+ + +IA AIV +R Sbjct: 117 RGFSFRFDAPLDMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRA 176 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 +P TT+ L+ ++ + V + + PATR+FQA+RIF+N E+EE+ L LK Sbjct: 177 ESPIDTTRKLAQIVAQNVRTRERGQ-DPATRTFQAVRIFINRELEEVGAVLPQVMCRLKE 235 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDV 300 GG L V++FHSLEDR+VK+F S R A P + I + + P + ++ Sbjct: 236 GGRLAVIAFHSLEDRIVKQFVKKYSQHAPLPRWAAVREADLPELPLKIVGRALKPGEAEI 295 Query: 301 AFNRRSRSAKLRAGMRTV 318 A N R+RSA LR RT Sbjct: 296 AANPRARSAVLRVAERTA 313 >gi|118587349|ref|ZP_01544775.1| cell division protein MraW [Oenococcus oeni ATCC BAA-1163] gi|118432173|gb|EAV38913.1| cell division protein MraW [Oenococcus oeni ATCC BAA-1163] Length = 314 Score = 358 bits (919), Expect = 7e-97, Method: Composition-based stats. Identities = 107/308 (34%), Positives = 165/308 (53%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77 HV V L + + L + +DAT G GG++ K +V + D+D A+ ++ Sbjct: 7 HVTVFLRQAVENLAVKTNGIYVDATLGGGGHTDLLLKKALHGHVYSFDQDENAIDFNKKR 66 Query: 78 MRDY--KEQFSLFQATFSQL---QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + SL + F L + + +DG+VFDLGVSS Q D RGFS++ Sbjct: 67 FSKEISEGRLSLIHSNFQNLIKELNLLKVFAIDGIVFDLGVSSPQFDDEKRGFSYRSDAR 126 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S + A +VN KDL I+ GEEK AS IA I+KRR+ P TT++L Sbjct: 127 LDMRMDQSQSLDAYQIVNTWEYKDLASIINRYGEEKFASSIARKIIKRREVQPIITTEEL 186 Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 I++ + + + HPA ++FQA+RI VN+E+ L + L+ A + L GG + V++F Sbjct: 187 VETIKEALPDKILHKKGHPAKKTFQAIRIAVNDELNVLQEALKQASQLLNRGGRISVITF 246 Query: 251 HSLEDRLVKKFFASRSGK-VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK FF + K + + +P F+ +TK ++P+ E++ N R+ SA Sbjct: 247 QSLEDRIVKHFFNQLATKNQLPSKLPVPDKFIQEEFKLLTKHPIIPSVEEIEENHRAHSA 306 Query: 310 KLRAGMRT 317 K R + Sbjct: 307 KFRVLEKN 314 >gi|73667110|ref|YP_303126.1| S-adenosyl-methyltransferase MraW [Ehrlichia canis str. Jake] gi|88909200|sp|Q3YRX7|RSMH_EHRCJ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|72394251|gb|AAZ68528.1| methyl transferase [Ehrlichia canis str. Jake] Length = 297 Score = 358 bits (919), Expect = 7e-97, Method: Composition-based stats. Identities = 132/304 (43%), Positives = 192/304 (63%), Gaps = 12/304 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQET 77 H PVLL++++ +L+P GK+ +DATFGAGGY+++ V A+D+D +E Sbjct: 1 MHTPVLLKEMLEILDPQDGKIYVDATFGAGGYTKAILNAANCKVCAIDQDKHTSIFYEEL 60 Query: 78 MRDYKEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++ + F FSQ++ + + VDGVVFD+GVSSMQ+D +RGFSF K+GPLD Sbjct: 61 ANNFPNRIHFFINKFSQIKQVLLGAQLERVDGVVFDIGVSSMQLDDANRGFSFSKNGPLD 120 Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRMS S I AS VN + +++ I+ G EK + +IA AI+ R+ +TT +L+S Sbjct: 121 MRMSTSNSIDASVFVNTVSEEEIANIIYQYGGEKYSRKIAKAIINFRKKKVIETTGELAS 180 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 +++ V SKN+ I+PATR+FQA+RI+VN E++EL QG+ A L GG +IVVSFHSL Sbjct: 181 IVRSVVSRSKNHDINPATRTFQAIRIWVNKELQELEQGIMCAADLLNPGGKIIVVSFHSL 240 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 EDR+VK F S ++++ FQ I KK+V P+ E++ N RSRSAKLRA Sbjct: 241 EDRIVKMIFKSLCSDEISLKLNTG-------FQLINKKIVRPSFEEILNNPRSRSAKLRA 293 Query: 314 GMRT 317 ++ Sbjct: 294 ILKI 297 >gi|313896117|ref|ZP_07829671.1| S-adenosyl-methyltransferase MraW [Selenomonas sp. oral taxon 137 str. F0430] gi|312975542|gb|EFR41003.1| S-adenosyl-methyltransferase MraW [Selenomonas sp. oral taxon 137 str. F0430] Length = 310 Score = 358 bits (919), Expect = 7e-97, Method: Composition-based stats. Identities = 109/307 (35%), Positives = 154/307 (50%), Gaps = 10/307 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQ 75 HV VL + +A L P +D T G G++ +I +D+D A++ Q Sbjct: 4 HHVSVLPAETVAALAVVPEGTYVDCTLGGAGHAGRIAAQLSPAGRLIGIDQDETAIAAAQ 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + SL F L + +GV DG++FDLGVSS QID RGFS+ + P Sbjct: 64 VRLASAACRVSLVHDNFRNLTAILTAEGVSAVDGILFDLGVSSPQIDTAARGFSYMQDAP 123 Query: 133 LDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + SA VVN+ + LT I GEE+ A RIA I R+ P +TT +L Sbjct: 124 LDMRMDRRAVRSAHTVVNEYSAARLTEIFYTYGEERWAKRIAAFIEAARKERPIETTGEL 183 Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I + V + HPA R FQA+RI VN E+ L+ + +A ALK GG L V++F Sbjct: 184 VEIIDRAVPKKVRAKGGHPAKRVFQAIRIEVNEELTILSDAVTAAVHALKPGGRLAVITF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK+ + + H H + I K + + A N R++SA Sbjct: 244 HSLEDRIVKRTMQQLARGCICPPHTPACICGHTPELRLI-GKAQTASLAECAVNARAKSA 302 Query: 310 KLRAGMR 316 KLR + Sbjct: 303 KLRVAEK 309 >gi|167630120|ref|YP_001680619.1| s-adenosyl-methyltransferase mraw [Heliobacterium modesticaldum Ice1] gi|263456105|sp|B0TGB2|RSMH_HELMI RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|167592860|gb|ABZ84608.1| s-adenosyl-methyltransferase mraw [Heliobacterium modesticaldum Ice1] Length = 313 Score = 358 bits (919), Expect = 7e-97, Method: Composition-based stats. Identities = 119/312 (38%), Positives = 185/312 (59%), Gaps = 10/312 (3%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H+PVLL +V+ +L P P V LD T G GG+S + + VI LD+DP A++ Sbjct: 2 VFHHIPVLLHQVLEVLKPRPEGVYLDGTVGGGGHSAAILQKLSGRGRVIGLDQDPAALAA 61 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQK 129 + + ++ +L ++ F + V + G +DG++ D+GVSS Q+D +RGF+++ Sbjct: 62 AGRKLASFGDRVTLVRSNFRHIGAVVAELGLTGKIDGILLDIGVSSHQLDEAERGFTYRM 121 Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM+ S ++AS ++N+A ++ RIL GEE+ A RIA IVKRR P + T Sbjct: 122 DAPLDMRMNPESALTASKLLNEAPEGEIARILRDYGEERWAKRIAQFIVKRRALQPLERT 181 Query: 189 QDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L +I+ + + HPA R+FQALRI VN+E+ L + L +A +AL GG L V Sbjct: 182 GELVDIIRAAIPAAARQEGGHPAKRTFQALRIAVNDELGALEEALPAALEALAPGGRLAV 241 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 +SFHSLEDR+VK FFA ++ + + + + + ITKK +V + E++ N R+ Sbjct: 242 ISFHSLEDRIVKSFFAEQARGCLCPPDFPVCACGNRPKVKIITKKPLVGSDEEMRANPRA 301 Query: 307 RSAKLRAGMRTV 318 +SAKLRA + Sbjct: 302 QSAKLRAAEKIR 313 >gi|294677904|ref|YP_003578519.1| S-adenosyl-methyltransferase MraW [Rhodobacter capsulatus SB 1003] gi|294476724|gb|ADE86112.1| S-adenosyl-methyltransferase MraW [Rhodobacter capsulatus SB 1003] Length = 338 Score = 358 bits (919), Expect = 7e-97, Method: Composition-based stats. Identities = 150/336 (44%), Positives = 203/336 (60%), Gaps = 8/336 (2%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAV 71 + H+PVLL ++ + P LD TFGAGGY+R G VI +DRDP A Sbjct: 1 MDRPDTPHIPVLLRPLLQAVAPV-LGTWLDGTFGAGGYARGLLAAGAGRVIGIDRDPLAF 59 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQ 128 ++ E+ L + TFS L + G++GVV DLGVSSMQ+D +RGFSF Sbjct: 60 EMAAPWRGEFGERLVLVENTFSNLDAVAAEIAPEGLNGVVLDLGVSSMQLDQAERGFSFL 119 Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 + GPLDMRMS SG SA+D+VN A L IL GEE+ + RIA AIV+ R+SAP+++T Sbjct: 120 RDGPLDMRMSQSGPSAADLVNTAEEGALADILYHYGEERASRRIARAIVEARKSAPYEST 179 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 + L + I++ + K + HPATRSFQALRI VN+E +L GL +AE+ALK GG L VV Sbjct: 180 KQLVATIERCLPRPKPGQSHPATRSFQALRIAVNDEFGQLIAGLEAAERALKPGGKLAVV 239 Query: 249 SFHSLEDRLVKKFFASRSGKVM-AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+VK+FF +R+G+ R+ + A F +T+K V P + ++A N R+R Sbjct: 240 TFHSLEDRVVKRFFQARAGRAPGGSRYAPEAAPEAAAFDLVTRKGVGPDEIELAQNPRAR 299 Query: 308 SAKLRAGMRTVERS-IEDDSFVHLP-RLPTLSQFRG 341 SA LR G RT + D S + LP L + RG Sbjct: 300 SAILRIGARTDSPAGRADRSSLGLPAPLFETDRSRG 335 >gi|66047337|ref|YP_237178.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv. syringae B728a] gi|75500766|sp|Q4ZNY2|RSMH_PSEU2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|63258044|gb|AAY39140.1| methyltransferase [Pseudomonas syringae pv. syringae B728a] Length = 313 Score = 358 bits (919), Expect = 8e-97, Method: Composition-based stats. Identities = 115/307 (37%), Positives = 174/307 (56%), Gaps = 12/307 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H+ VLLE+ + L LD TFG GG+SR ++ D+DP A++ GQ Sbjct: 7 HITVLLEEAVEALAVRADGCYLDGTFGRGGHSRLILSQLGPDGRLLGFDKDPQAIATGQA 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F + Q +F++L ++G V G++ DLGVSS Q+D +RGFSF GP Sbjct: 67 -LAAEDGRFVIVQRSFAELGSETQERGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDGP 125 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + GISA++ + A +++ R+ GEE+ A R+A+A+V RR+ PF+ T DL Sbjct: 126 LDMRMDPARGISAAEFIATAPAEEIARVFKEYGEERFAKRMANAVVARREVQPFERTADL 185 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +++ + + +PATR+FQ LRI VNNE+ +L GL +A AL+ GG L+V+SFH Sbjct: 186 AEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLVVISFH 244 Query: 252 SLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK F + G+ + +P P + I K + + N RSRSA Sbjct: 245 SLEDRIVKLFMRKLAKGEADNMPRNLPIQFKPFEPKIKIHGKAQFASDAETKANPRSRSA 304 Query: 310 KLRAGMR 316 +R + Sbjct: 305 VMRVAEK 311 >gi|212712749|ref|ZP_03320877.1| hypothetical protein PROVALCAL_03846 [Providencia alcalifaciens DSM 30120] gi|212684665|gb|EEB44193.1| hypothetical protein PROVALCAL_03846 [Providencia alcalifaciens DSM 30120] Length = 317 Score = 358 bits (919), Expect = 8e-97, Method: Composition-based stats. Identities = 125/323 (38%), Positives = 177/323 (54%), Gaps = 22/323 (6%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPF 69 + HV VLL++ + LN P + +D TFG GG+SR +IA+DRDP Sbjct: 1 MTQQQFKHVTVLLDEAVNGLNIKPNGIYIDGTFGRGGHSRLILSQLGEQGRLIAIDRDPE 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGF 125 A+ QE +F + FS + DYV ++G +DGV+ DLGVSS Q+D +RGF Sbjct: 61 AIKAAQEI---NDPRFMIKHGPFSAIADYVEEEGLVGKIDGVLLDLGVSSPQLDDPERGF 117 Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR---Q 181 SF + GPLDMRM + G SA + A D+ +L GEE+ + RIA AIV+R + Sbjct: 118 SFMRDGPLDMRMDPTRGQSAQQWLMTAEADDIAWVLKTFGEERFSKRIARAIVERNHNPE 177 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 P T+ L+ LI K K+ HPATRSFQA+RI++N+E+EE+ + L A L Sbjct: 178 EEPLTRTRHLAELIAKVSPI-KDRHKHPATRSFQAIRIYINSELEEIEKALNGAMSVLAP 236 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPT 296 G L V+SFHSLEDRLVK+F S + + A A +++ K + P+ Sbjct: 237 EGRLSVISFHSLEDRLVKRFIRQNSTGPSVPAGIPLTEAQIKELGAAKLRALGK--MKPS 294 Query: 297 QEDVAFNRRSRSAKLRAGMRTVE 319 + ++ N R+RS+ LR R VE Sbjct: 295 ELEIDENPRARSSVLRFAERAVE 317 >gi|330973397|gb|EGH73463.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv. aceris str. M302273PT] Length = 313 Score = 358 bits (919), Expect = 8e-97, Method: Composition-based stats. Identities = 114/307 (37%), Positives = 174/307 (56%), Gaps = 12/307 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H+ VLLE+ + L LD TFG GG+SR ++ D+DP A++ GQ Sbjct: 7 HITVLLEEAVEALAVRADGCYLDGTFGRGGHSRLILSQLGPDGRLLGFDKDPQAIATGQA 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F + Q +F++L ++G V G++ DLGVSS Q+D +RGFSF GP Sbjct: 67 -LAAEDGRFVIVQRSFAELGSETQERGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDGP 125 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G+SA++ + A +++ R+ GEE+ A R+A+A+V RR+ PF+ T DL Sbjct: 126 LDMRMDPARGVSAAEFIATAPAEEIARVFKEYGEERFAKRMANAVVARREVQPFERTADL 185 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +++ + + +PATR+FQ LRI VNNE+ +L GL +A AL+ GG L+V+SFH Sbjct: 186 AEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLVVISFH 244 Query: 252 SLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK F + G+ + +P P + I K + + N RSRSA Sbjct: 245 SLEDRIVKLFMRKLAKGEADNMPRNLPIQFKPFEPKIKIHGKAQFASDAETKANPRSRSA 304 Query: 310 KLRAGMR 316 +R + Sbjct: 305 VMRVAEK 311 >gi|292489365|ref|YP_003532252.1| S-adenosyl methionine adenyltransferase [Erwinia amylovora CFBP1430] gi|292898411|ref|YP_003537780.1| S-adenosyl-methyltransferase [Erwinia amylovora ATCC 49946] gi|291198259|emb|CBJ45365.1| S-adenosyl-methyltransferase [Erwinia amylovora ATCC 49946] gi|291554799|emb|CBA22629.1| S-adenosyl methionine adenyltransferase [Erwinia amylovora CFBP1430] gi|312173530|emb|CBX81784.1| S-adenosyl methionine adenyltransferase [Erwinia amylovora ATCC BAA-2158] Length = 312 Score = 358 bits (919), Expect = 8e-97, Method: Composition-based stats. Identities = 122/317 (38%), Positives = 181/317 (57%), Gaps = 19/317 (5%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAV 71 H VLL++ + LN P + +D TFG GG+SR + A+DRDP A+ Sbjct: 2 QDTYKHTTVLLDEAVNALNIKPDGIYIDGTFGRGGHSRLILSQLGEHGRLYAIDRDPQAI 61 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSF 127 + + +F++ FS L +Y +G +DG++ DLGVSS Q+D +RGFSF Sbjct: 62 AAAADI---TDPRFTIIHGPFSALAEYAEQRGLTGKIDGILLDLGVSSPQLDDAERGFSF 118 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + GPLDMRM + G SA++ + +A D+T +L GEE+ A RIA AIV+R + P Sbjct: 119 MRDGPLDMRMDPTRGQSAAEWLLKAEESDITFVLKTFGEERFARRIARAIVERNRQQPMT 178 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T++L+ +I K+ HPATRSFQA+RI+VN+E+EE+ Q L+ A AL AGG L Sbjct: 179 RTKELADVIYAATPV-KDKFKHPATRSFQAIRIWVNSELEEIEQALKGALSALAAGGRLS 237 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVA 301 ++SFHSLEDR+VK+F +S + + A +++ K ++P + +VA Sbjct: 238 IISFHSLEDRIVKRFMREQSRGPQVPHGLPMTEAQLSSLGGRQLKALGK--MMPGESEVA 295 Query: 302 FNRRSRSAKLRAGMRTV 318 N R+RS+ LR RT Sbjct: 296 DNPRARSSVLRIAERTA 312 >gi|70732392|ref|YP_262148.1| S-adenosyl-methyltransferase MraW [Pseudomonas fluorescens Pf-5] gi|88909211|sp|Q4K6I5|RSMH_PSEF5 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|68346691|gb|AAY94297.1| S-adenosyl-methyltransferase MraW [Pseudomonas fluorescens Pf-5] Length = 315 Score = 358 bits (919), Expect = 8e-97, Method: Composition-based stats. Identities = 115/308 (37%), Positives = 179/308 (58%), Gaps = 12/308 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 +H+ VLL++ + L P LD TFG GG+SR ++ D+DP A++ GQ Sbjct: 8 NHITVLLDEAVEALAVRPDGCYLDGTFGRGGHSRLILSKLGPQGRLLGFDKDPQAIATGQ 67 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +F + Q +F++L V ++G V GV+ DLGVSS Q+D +RGFSF G Sbjct: 68 A-LAAEDGRFVVVQRSFAELGSEVAERGLAGKVSGVLLDLGVSSPQLDDPERGFSFLNDG 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + GISA+ + A V+++ R+ GEE+ + R+A A+V+RR+ PF+ T D Sbjct: 127 PLDMRMDPTRGISAAQFIATAPVEEIARVFKEYGEERFSGRMARAVVERREIQPFERTAD 186 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ +++ + + +PATR+FQ LRI VNNE+ +L GL +A ++L+ GG L+V+SF Sbjct: 187 LAEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAALESLEVGGRLVVISF 245 Query: 251 HSLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFNRRSRS 308 HSLEDR+VK F G+ + +P V + I K ++ ++ N R+RS Sbjct: 246 HSLEDRIVKLFMRRLVKGESDNLPRNLPVRFEAFVPKIKIHGKAQFASEAELKANPRARS 305 Query: 309 AKLRAGMR 316 A +R + Sbjct: 306 AVMRVAEK 313 >gi|295086283|emb|CBK67806.1| S-adenosyl-methyltransferase MraW [Bacteroides xylanisolvens XB1A] Length = 304 Score = 358 bits (919), Expect = 8e-97, Method: Composition-based stats. Identities = 106/304 (34%), Positives = 161/304 (52%), Gaps = 16/304 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HVPVLL++ + +N P +D TFG G+SR G ++ D+D A E Sbjct: 9 HVPVLLKESVDGMNIQPDGTYVDVTFGGAGHSREILSRLGEGGRLLGFDQDEDA-----E 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 F ++ F LQ+++ VD ++ DLGVSS D +RGFSF+ G L Sbjct: 64 RNIVNDPHFIFVRSNFRYLQNFLRYHDIEQVDAILADLGVSSHHFDDSERGFSFRFDGAL 123 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +GI+A+D+VN + L + + GE K + ++A IVK R +T + Sbjct: 124 DMRMNKRAGITAADIVNTYEEERLANLFYLYGELKNSRKLASVIVKTRSGQNIRTIGEFL 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ F + + FQALRI VN E+E L + L +A +ALK GG L+V+++HS Sbjct: 184 EIIKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLLAATEALKPGGRLVVITYHS 241 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK + + + A + P F+ + KV+VP + ++ N RSRSAKLR Sbjct: 242 LEDRMVKNIMKTGNVEGKAESDFFGNLQTP--FRLVNNKVIVPDEAEIERNPRSRSAKLR 299 Query: 313 AGMR 316 + Sbjct: 300 IAEK 303 >gi|330888582|gb|EGH21243.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv. mori str. 301020] Length = 313 Score = 358 bits (919), Expect = 8e-97, Method: Composition-based stats. Identities = 114/307 (37%), Positives = 174/307 (56%), Gaps = 12/307 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H+ VLLE+ + L LD TFG GG+SR ++ D+DP A++ GQ Sbjct: 7 HITVLLEEAVEALAVRADGCYLDGTFGRGGHSRLILSQLGPDGRLLGFDKDPQAIATGQA 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F + Q +F++L ++G V G++ DLGVSS Q+D +RGFSF GP Sbjct: 67 -LAAEDGRFVIVQRSFAELGSEAQERGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDGP 125 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G+SA++ + A +++ R+ GEE+ A R+A+A+V RR+ PF+ T DL Sbjct: 126 LDMRMDPTRGVSAAEFIATAPAEEIARVFKEYGEERFAKRMANAVVARREVQPFERTADL 185 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +++ + + +PATR+FQ LRI VNNE+ +L GL +A AL+ GG L+V+SFH Sbjct: 186 AEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLVVISFH 244 Query: 252 SLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK F + G+ + +P P + I K + + N RSRSA Sbjct: 245 SLEDRIVKLFMRKLAKGEADNMPRNLPIQFKPFEPKIKIPGKAQFASDTETKANPRSRSA 304 Query: 310 KLRAGMR 316 +R + Sbjct: 305 VMRVAEK 311 >gi|260752706|ref|YP_003225599.1| S-adenosyl-methyltransferase MraW [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552069|gb|ACV75015.1| S-adenosyl-methyltransferase MraW [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 332 Score = 358 bits (919), Expect = 8e-97, Method: Composition-based stats. Identities = 143/331 (43%), Positives = 197/331 (59%), Gaps = 12/331 (3%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSNVIALDRD 67 M+S H+PVLL++VI L+P G + +D TFGAGGYSR+ K + VIA DRD Sbjct: 1 MTS--DSFSAPHIPVLLDEVIEALSPVEGGIYIDGTFGAGGYSRAILEKADTQVIAFDRD 58 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRG 124 P A+ G + YK + L FS + D + K VDG+VFD+GVSSMQID +RG Sbjct: 59 PDAIREGAALVEKYKGRLRLVNDCFSNIDHHLDALDIKAVDGMVFDIGVSSMQIDRPERG 118 Query: 125 FSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 FS Q GPLDMRM+ +G+SA + +N A KD+ +L + GEE+Q+ R+A AIV R P Sbjct: 119 FSIQADGPLDMRMAQAGLSAEEFLNNAQEKDIADVLYLYGEERQSRRVARAIVAAR---P 175 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 TT L+ +I++++ + ++ PA FQA+RI +N E++EL GL++AE+ LK G Sbjct: 176 LTTTFQLAKVIRQSLGYRPFDKKDPAAHCFQAIRIHLNRELDELKDGLQTAERFLKTKGC 235 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 L VV+FHSLEDR+VK F +G+ RH VF S + V + ++A N Sbjct: 236 LAVVTFHSLEDRIVKHFMREHAGQTGQVSRHQPVIPQQNPVFFSKPARPVRAGEAELARN 295 Query: 304 RRSRSAKLRAGMRTVERSIEDDSF--VHLPR 332 R+RSA LRA RT ED S H+PR Sbjct: 296 PRARSATLRAVYRTETPFSEDISRPDTHIPR 326 >gi|71735888|ref|YP_276238.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv. phaseolicola 1448A] gi|88909210|sp|Q48EF0|RSMH_PSE14 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|71556441|gb|AAZ35652.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv. phaseolicola 1448A] gi|320322458|gb|EFW78551.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv. glycinea str. B076] gi|320330073|gb|EFW86060.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv. glycinea str. race 4] gi|330875017|gb|EGH09166.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv. glycinea str. race 4] Length = 313 Score = 358 bits (919), Expect = 9e-97, Method: Composition-based stats. Identities = 114/307 (37%), Positives = 174/307 (56%), Gaps = 12/307 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H+ VLLE+ + L LD TFG GG+SR ++ D+DP A++ GQ Sbjct: 7 HITVLLEEAVEALEVRADGCYLDGTFGRGGHSRLILSQLGPDGRLLGFDKDPQAIATGQA 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F + Q +F++L ++G V G++ DLGVSS Q+D +RGFSF GP Sbjct: 67 -LAAEDGRFVIVQRSFAELGSEAQERGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDGP 125 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G+SA++ + A +++ R+ GEE+ A R+A+A+V RR+ PF+ T DL Sbjct: 126 LDMRMDPTRGVSAAEFIATAPAEEIARVFKEYGEERFAKRMANAVVARREVQPFERTADL 185 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +++ + + +PATR+FQ LRI VNNE+ +L GL +A AL+ GG L+V+SFH Sbjct: 186 AEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLVVISFH 244 Query: 252 SLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK F + G+ + +P P + I K + + N RSRSA Sbjct: 245 SLEDRIVKLFMRKLAKGEADNMPRNLPIQFKPFEPKIKIHGKAQFASDTETKANPRSRSA 304 Query: 310 KLRAGMR 316 +R + Sbjct: 305 VMRVAEK 311 >gi|254805557|ref|YP_003083778.1| S-adenosyl-methyltransferase [Neisseria meningitidis alpha14] gi|254669099|emb|CBA07673.1| S-adenosyl-methyltransferase [Neisseria meningitidis alpha14] Length = 328 Score = 358 bits (919), Expect = 9e-97, Method: Composition-based stats. Identities = 117/318 (36%), Positives = 174/318 (54%), Gaps = 13/318 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 MS A + H+ VLL + + L V +D TFG GG+SR +I D Sbjct: 1 MSGAESY---RHITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFD 57 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGD 122 +DP A++ +E + ++ + F+ Q + G VDG +FDLG+SS QID G Sbjct: 58 KDPQAIAVAEE-LARSDKRVGVVHGGFASFQAALDGLGIGKVDGALFDLGISSPQIDDGS 116 Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF+ PLDMRM + G+SA++ + A+ +DL ++ GEE+ + +IA AIV +R Sbjct: 117 RGFSFRFDAPLDMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRA 176 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 +P TT+ L+ ++ + V + + PATR+FQA+RIF+N E+EE+ L LK Sbjct: 177 ESPIDTTRKLAQIVAQNVRTRERGQ-DPATRTFQAVRIFINRELEEVGAVLPQVMCRLKE 235 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDV 300 GG L V++FHSLEDR+VK+F S R A P + I + + P + ++ Sbjct: 236 GGRLAVIAFHSLEDRIVKQFVKKYSQHAPLPRWAAVREADLPELPLKIVGRALKPGEAEI 295 Query: 301 AFNRRSRSAKLRAGMRTV 318 A N R+RSA LR RT Sbjct: 296 AANPRARSAVLRVAERTA 313 >gi|261493507|ref|ZP_05990029.1| S-adenosylmethionine-dependent methyltransferase [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261495860|ref|ZP_05992292.1| S-adenosylmethionine-dependent methyltransferase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261308487|gb|EEY09758.1| S-adenosylmethionine-dependent methyltransferase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310840|gb|EEY12021.1| S-adenosylmethionine-dependent methyltransferase [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 312 Score = 358 bits (919), Expect = 9e-97, Method: Composition-based stats. Identities = 115/310 (37%), Positives = 170/310 (54%), Gaps = 16/310 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H+ VLL + + L P + +D TFG GG+SR +IA DRDP A++ Q Sbjct: 6 KHITVLLHEAVDGLAIKPNGIYIDGTFGRGGHSRLILSKLGENGRLIATDRDPRAIAEAQ 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +F + FS + + G +DG++ DLGVSS Q+D +RGFSF + G Sbjct: 66 TI---SDPRFQIEHTAFSAIPELCERMGLVGKIDGILLDLGVSSPQLDEAERGFSFMRDG 122 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ--SAPFQTT 188 PLDMRM + G+SA++ + Q + +DL +L GEE+ A RIA A+V + + T Sbjct: 123 PLDMRMDTTKGLSAAEWLAQVSAEDLAWVLKEFGEERFAKRIAQAVVSYNKSANEKISRT 182 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ +I V F K+ HPATRSFQA+RIF+N+E++EL + L SA L G L ++ Sbjct: 183 LQLAQIIADAVPF-KDKHKHPATRSFQAIRIFINSELDELEKALNSALTVLAPEGRLSII 241 Query: 249 SFHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 SFHSLEDR+VK+F S V ++ + + K ++P++ ++ N RS Sbjct: 242 SFHSLEDRMVKQFVRKHSKGMDVPRGLPILEAELTKNIPLKTIGKAIMPSEAEIEANARS 301 Query: 307 RSAKLRAGMR 316 RSA LR + Sbjct: 302 RSAVLRIAEK 311 >gi|149186210|ref|ZP_01864524.1| S-adenosyl-methyltransferase [Erythrobacter sp. SD-21] gi|148830241|gb|EDL48678.1| S-adenosyl-methyltransferase [Erythrobacter sp. SD-21] Length = 312 Score = 358 bits (919), Expect = 9e-97, Method: Composition-based stats. Identities = 134/312 (42%), Positives = 192/312 (61%), Gaps = 9/312 (2%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVS--CGQ 75 H+PVLL++V+ LNP PG V++DATFGAGGY+R+ + G+ V A DRDP A++ Sbjct: 4 APHIPVLLDEVVEALNPQPGDVLIDATFGAGGYTRALLERGATVHAFDRDPDAIASGRTW 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + L FS++ + + GV DGVV D+GVSSMQ+D RGF+F GP Sbjct: 64 RETEQTPPRLILHPHRFSEMLEVMRAAGVERVDGVVMDIGVSSMQLDQAHRGFAFSADGP 123 Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 LDMRMS G SA+D +N A + ++ GEE+Q+ R+A AIV R P +TT DL+ Sbjct: 124 LDMRMSQDGESAADFLNTAAESTIADVVYQYGEERQSRRVARAIVAAR---PLETTGDLA 180 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +++K + +++ PATR+FQA+RI VN E++EL+QGL +AE L+ GG L VVSFHS Sbjct: 181 RVVRKALGHKPHDKKDPATRTFQAIRIHVNGELDELSQGLSAAEHLLREGGRLAVVSFHS 240 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK+F S RH+ + VF ++ K + PT+ ++ N R+RS+ LR Sbjct: 241 LEDRIVKRFLREASSTPSGSRHVPMAAQVDPVFSPVS-KAIKPTEAEIDRNPRARSSVLR 299 Query: 313 AGMRTVERSIED 324 +RT + E Sbjct: 300 HAVRTAAPAREA 311 >gi|238786715|ref|ZP_04630516.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia frederiksenii ATCC 33641] gi|238725083|gb|EEQ16722.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia frederiksenii ATCC 33641] Length = 320 Score = 358 bits (919), Expect = 9e-97, Method: Composition-based stats. Identities = 120/311 (38%), Positives = 175/311 (56%), Gaps = 19/311 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H VLL++ + LN + +D TFG GG+SR +IA+DRDP A+ + Sbjct: 13 KHTSVLLDEAVNGLNIRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDRDPQAIEAAK 72 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +FS+ FS L YV + +DGV+ DLGVSS Q+D +RGFSF + G Sbjct: 73 SI---TDPRFSIVHGPFSDLAHYVRELDLVGRIDGVLLDLGVSSPQLDDPERGFSFMRDG 129 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + G+SA+D + +A+ D+ +L GEE+ A R+A AIV+R + P T++ Sbjct: 130 PLDMRMDPTRGLSAADWLMKASADDIAWVLKTFGEERFAKRLAKAIVERNLTQPMTRTKE 189 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ LI F + ++ HPATRSFQA+RI++N+E+EE+ + L A + L G L V+SF Sbjct: 190 LADLIANASPFREKHK-HPATRSFQAIRIYINSELEEIERALDGALEVLAPEGRLSVISF 248 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNRR 305 HSLEDR+VK F S + + A +S+ K ++P +VA N R Sbjct: 249 HSLEDRIVKNFIRHHSRGPQVPAGLPLTEAQLRSMGGRSLKSVGK--MMPPDAEVAENPR 306 Query: 306 SRSAKLRAGMR 316 +RS+ LR R Sbjct: 307 ARSSVLRFAER 317 >gi|304383929|ref|ZP_07366386.1| S-adenosyl-methyltransferase MraW [Prevotella marshii DSM 16973] gi|304335007|gb|EFM01280.1| S-adenosyl-methyltransferase MraW [Prevotella marshii DSM 16973] Length = 305 Score = 357 bits (918), Expect = 9e-97, Method: Composition-based stats. Identities = 109/304 (35%), Positives = 159/304 (52%), Gaps = 16/304 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HVPVLL + + L P V +D TFG GG+SR G + A D+D A + Sbjct: 9 HVPVLLTESVDGLKIRPNGVYVDVTFGGGGHSREILARLGKGGQLYAFDQDADAEQNCPD 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++F+ ++ F L++++ G+ DG++ DLGVSS D RGFSF+ + PL Sbjct: 69 -----DDRFTFVRSNFRYLKNWIHYYGIEKIDGLLADLGVSSHHFDDETRGFSFRFNAPL 123 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ + +A+D+VN L+ + GE K A R+A AIV+ R P TTQDL+ Sbjct: 124 DMRMNKRAKTTAADIVNHYTETQLSDLFYGYGELKNARRMAAAIVRERAENPIVTTQDLT 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++ + K + R FQALRI VN E+ L + L SA + L GG L ++++HS Sbjct: 184 DCMRPLI--RKEHEKKDMARLFQALRIEVNQEMTALKEMLESATELLSDGGRLSIITYHS 241 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK + + + P Q I K VP+ ++ N RSRSAKLR Sbjct: 242 LEDRMVKNLMKTGNTDGEQKKDFFGRMETP--LQPIGNKPTVPSDDEQQRNPRSRSAKLR 299 Query: 313 AGMR 316 + Sbjct: 300 IAEK 303 >gi|261345652|ref|ZP_05973296.1| S-adenosyl-methyltransferase MraW [Providencia rustigianii DSM 4541] gi|282566134|gb|EFB71669.1| S-adenosyl-methyltransferase MraW [Providencia rustigianii DSM 4541] Length = 317 Score = 357 bits (918), Expect = 9e-97, Method: Composition-based stats. Identities = 122/321 (38%), Positives = 171/321 (53%), Gaps = 18/321 (5%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPF 69 + HV VLL++ + LN P + +D TFG GG+SR +IA+DRDP Sbjct: 1 MTQQQFKHVTVLLDEAVNGLNLKPNGIYIDGTFGRGGHSRLILSQLGENGRLIAIDRDPE 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGF 125 A+ QE +F + FS + DY ++G +DGV+ DLGVSS Q+D +RGF Sbjct: 61 AIKAAQEI---DDPRFMIKHGPFSAIADYAEEEGLVGKIDGVLLDLGVSSPQLDDAERGF 117 Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR---Q 181 SF + GPLDMRM + G SA+ + A D+ +L GEE+ A RIA AIV+R + Sbjct: 118 SFMRDGPLDMRMDPTHGQSAAQWLMTAEADDIAWVLKTFGEERFAKRIARAIVERNHNPE 177 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 P T+ L+ LI K K+ HPATRSFQA+RI++N+E+EE+ + L A L Sbjct: 178 EEPLTRTRHLAELIAKVSPM-KDRHKHPATRSFQAIRIYINSELEEIEKALNGAMSVLAP 236 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQE 298 G L V+SFHSLEDRLVK+F S + + A + + P+ Sbjct: 237 EGRLSVISFHSLEDRLVKRFIRQHSSGPSVPPGIPLTEAQIKELGAAKLRGLGKMKPSDS 296 Query: 299 DVAFNRRSRSAKLRAGMRTVE 319 ++ N R+RS+ LR R E Sbjct: 297 EIDENPRARSSVLRFAERAPE 317 >gi|167035511|ref|YP_001670742.1| S-adenosyl-methyltransferase MraW [Pseudomonas putida GB-1] gi|262825111|sp|B0KFT4|RSMH_PSEPG RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|166861999|gb|ABZ00407.1| S-adenosyl-methyltransferase MraW [Pseudomonas putida GB-1] Length = 315 Score = 357 bits (918), Expect = 9e-97, Method: Composition-based stats. Identities = 115/308 (37%), Positives = 175/308 (56%), Gaps = 12/308 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 +H+ VLL++ + L LD TFG GG+SR ++ D+DP A++ GQ Sbjct: 8 NHITVLLDEAVEALALRADGCYLDGTFGRGGHSRLILSKLGPQGRLLGFDKDPQAIATGQ 67 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +F + Q +F++L V ++G V GV+ DLGVSS Q+D +RGFSF G Sbjct: 68 A-LAAEDGRFVIVQRSFAELGAEVAERGLHGKVSGVLLDLGVSSPQLDDPERGFSFLNDG 126 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ GISA++ + A V+++ R+ GEE+ A R+A A+V+RR+ PF T D Sbjct: 127 PLDMRMNPGQGISAAEFIATAPVEEIARVFKEYGEERFAGRMARAVVERREKQPFTRTAD 186 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ +++ + + +PATR+FQ LRI VNNE+ +L GL +A AL+ GG L V+SF Sbjct: 187 LAEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLAVISF 245 Query: 251 HSLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFNRRSRS 308 HSLEDR+VK F G+ + +P + + K ++ ++ N RSRS Sbjct: 246 HSLEDRIVKLFMRKLVKGEADNLPRNLPVQHKVFEPKIKLIGKAQFASEAELKANPRSRS 305 Query: 309 AKLRAGMR 316 A +R + Sbjct: 306 AVMRVAEK 313 >gi|302185277|ref|ZP_07261950.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv. syringae 642] Length = 313 Score = 357 bits (918), Expect = 1e-96, Method: Composition-based stats. Identities = 114/307 (37%), Positives = 173/307 (56%), Gaps = 12/307 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H+ VLLE+ + L LD TFG GG+SR ++ D+DP A++ GQ Sbjct: 7 HITVLLEEAVEALAVRADGCYLDGTFGRGGHSRLILSQLGPDGRLLGFDKDPQAIATGQA 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F + Q +F++L ++G V G++ DLGVSS Q+D +RGFSF GP Sbjct: 67 -LAAEDGRFVIVQRSFAELGSEAQERGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDGP 125 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G+SA+ + A +++ R+ GEE+ A R+A+A+V RR+ PF+ T DL Sbjct: 126 LDMRMDPTRGVSAAQFIATAPAEEIARVFKEYGEERFAKRMANAVVARREVQPFERTADL 185 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +++ + + +PATR+FQ LRI VNNE+ +L GL +A AL+ GG L+V+SFH Sbjct: 186 AEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLVVISFH 244 Query: 252 SLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK F + G+ + +P P + I K + + N RSRSA Sbjct: 245 SLEDRIVKLFMRKLAKGEADNMPRNLPIQFKPFEPKIKIHGKAQFASDVETKANPRSRSA 304 Query: 310 KLRAGMR 316 +R + Sbjct: 305 VMRVAEK 311 >gi|254419187|ref|ZP_05032911.1| S-adenosyl-methyltransferase MraW [Brevundimonas sp. BAL3] gi|196185364|gb|EDX80340.1| S-adenosyl-methyltransferase MraW [Brevundimonas sp. BAL3] Length = 322 Score = 357 bits (918), Expect = 1e-96, Method: Composition-based stats. Identities = 141/313 (45%), Positives = 185/313 (59%), Gaps = 5/313 (1%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQ 75 T H PVLL +VI L P PG V++DATFGAGGY+R+ G+ VI LDRDP Sbjct: 2 TEAPHAPVLLAEVIEALKPGPGDVVIDATFGAGGYTRAILATGAQVIGLDRDPTVQPHAD 61 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +D+ QF L + FS L D G +DG VFD+GVSSMQ+D +RGFSF + GP Sbjct: 62 AVAKDFPGQFQLIRTPFSGLAQAFADSGKAKLDGAVFDIGVSSMQLDQAERGFSFMRDGP 121 Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 LDMRMS G +A+D+VN + L I + GEE+Q+ R+A AI++RR F T DL+ Sbjct: 122 LDMRMSDEGETAADIVNSWDHGPLAHIFKLYGEERQSGRVATAILRRRVEQSFTRTLDLA 181 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +++K + + IHPATR FQALRI VN+E+ EL +GL +AE L GG L VV+FHS Sbjct: 182 EVVEKALGGRRGAPIHPATRVFQALRIAVNDELGELERGLEAAEATLAPGGRLAVVTFHS 241 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 LEDR+VK F R+G A P + F K + + + N R+RSAK Sbjct: 242 LEDRIVKAFLTERTGNTPAGSRHAPIAVDPRKPSFTLQFKGAREAGEGERSTNPRARSAK 301 Query: 311 LRAGMRTVERSIE 323 LRA +RT + Sbjct: 302 LRAAVRTEAPAWG 314 >gi|242238092|ref|YP_002986273.1| S-adenosyl-methyltransferase MraW [Dickeya dadantii Ech703] gi|263446348|sp|C6C9K0|RSMH_DICDC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|242130149|gb|ACS84451.1| S-adenosyl-methyltransferase MraW [Dickeya dadantii Ech703] Length = 313 Score = 357 bits (918), Expect = 1e-96, Method: Composition-based stats. Identities = 121/312 (38%), Positives = 175/312 (56%), Gaps = 15/312 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72 H VLL++ + LN + +D TFG GG+SR ++A+DRDP AVS Sbjct: 3 ETFKHTTVLLDEAVNGLNIRSNGIYIDGTFGRGGHSRLILSHLGTDGQLLAIDRDPQAVS 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128 + +FS+ FS L DYV ++G +DG++ DLGVSS Q+D +RGFSF Sbjct: 63 AAS---AIHDARFSIIHGPFSSLADYVAERGLVGRIDGILLDLGVSSPQLDDPERGFSFM 119 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM S G+SA++ + A D+ +L GEE+ A RIA AIV+R + P Sbjct: 120 RDGPLDMRMDPSRGVSAAEWLMNAEADDIAWVLKTFGEERFAKRIARAIVERNRVEPLTR 179 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T+ L+ LI + ++ HPATRSFQA+RI++N+E++E+ + L A + L G L V Sbjct: 180 TKALAELIAAACPIREKHK-HPATRSFQAIRIYINSELDEIERALEGALQVLAPHGRLSV 238 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNR 304 +SFHSLEDR+VK+F S + + A T K V +P++ +V N Sbjct: 239 ISFHSLEDRIVKRFIRQHSRGPQVPAGLPLTEAQLKSQGGRTLKAVGKMMPSESEVGENP 298 Query: 305 RSRSAKLRAGMR 316 R+RS+ LR R Sbjct: 299 RARSSVLRFAER 310 >gi|312888802|ref|ZP_07748365.1| S-adenosyl-methyltransferase MraW [Mucilaginibacter paludis DSM 18603] gi|311298677|gb|EFQ75783.1| S-adenosyl-methyltransferase MraW [Mucilaginibacter paludis DSM 18603] Length = 300 Score = 357 bits (918), Expect = 1e-96, Method: Composition-based stats. Identities = 112/304 (36%), Positives = 162/304 (53%), Gaps = 16/304 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H PV+L + I LN P +D TFG GG+SR K +IA D+D A + + Sbjct: 5 HNPVMLAECIEGLNINPEGTYVDVTFGGGGHSREILKHLGPQGKLIAFDQDVDAQANAID 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 E+F F L+++ G VDG++ DLGVSS Q D +RGFS + L Sbjct: 65 -----DERFVFVDQNFRYLKNFCRLHGAIPVDGILADLGVSSHQFDKAERGFSTRFDADL 119 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S +A D+VN DL RI G+ GE + A +A IV R ++P T DL Sbjct: 120 DMRMDQSATQTAKDIVNTYAEADLHRIFGMYGEIQNAKTLARTIVTARLNSPINTIADLK 179 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 I + K N+ + FQALRI VN E+E L + L+ + L GG L+V+S+HS Sbjct: 180 GAIATLIPRGKENK--YLAQVFQALRIEVNQELEALQEFLKQTVEVLAPGGRLVVMSYHS 237 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDRLVK F A + + ++ P F+++++K + T++++ N R+RSAKLR Sbjct: 238 LEDRLVKSFIAKGKFSGELEKDIYGNDDRP--FEAVSRKAITATEDEIKLNNRARSAKLR 295 Query: 313 AGMR 316 ++ Sbjct: 296 IAVK 299 >gi|301155878|emb|CBW15347.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Haemophilus parainfluenzae T3T1] Length = 320 Score = 357 bits (918), Expect = 1e-96, Method: Composition-based stats. Identities = 123/318 (38%), Positives = 174/318 (54%), Gaps = 20/318 (6%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 + +H+ VLL + + L + +D TFG GG+SR +IA+DRDP A++ Sbjct: 6 SAPEHITVLLHEAVNGLALKENGIYIDGTFGRGGHSRLILSQLSENGRLIAIDRDPRAIA 65 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 ++ +F + +FS + D +DG++ DLGVSS Q+D DRGFSF Sbjct: 66 EAEKI---QDPRFHIEHNSFSHIPDICQKLDLVGKIDGILLDLGVSSPQLDEADRGFSFM 122 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP--- 184 K GPLDMRM + G+SA++ + Q +V DLT +L GEE+ A RIA AIV+ +SA Sbjct: 123 KDGPLDMRMDTTQGLSAAEWLKQVSVDDLTWVLKTFGEERFAKRIATAIVEFNKSAVKNG 182 Query: 185 ---FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 T L+ LI + V F K+ HPATRSFQA+RI++N E++EL L SA L Sbjct: 183 TECLSRTSQLAELIAQAVPF-KDKHKHPATRSFQAIRIYINAELDELESVLNSALDMLAP 241 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ--SITKKVVVPTQED 299 G L ++SFHSLEDR+VK F +S R + Q I K + P++ + Sbjct: 242 EGRLSIISFHSLEDRMVKHFMRKQSKGEDIPRGLPLREDQIQRNQKLKIIGKAIQPSEAE 301 Query: 300 VAFNRRSRSAKLRAGMRT 317 ++ N RSRSA LR R Sbjct: 302 ISANPRSRSAVLRIAERV 319 >gi|288801599|ref|ZP_06407041.1| S-adenosyl-methyltransferase MraW [Prevotella melaninogenica D18] gi|288335641|gb|EFC74074.1| S-adenosyl-methyltransferase MraW [Prevotella melaninogenica D18] Length = 314 Score = 357 bits (918), Expect = 1e-96, Method: Composition-based stats. Identities = 111/306 (36%), Positives = 172/306 (56%), Gaps = 13/306 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H+PVLL + I LN V +D TFG GG+SR GS++ + D+D A Sbjct: 9 HIPVLLNESIEGLNLHANGVYVDVTFGGGGHSREILSRLAEGSHLYSFDQDADAEQNIDN 68 Query: 77 --TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + ++F+ ++ F L++++ GV DG++ DLGVSS D RGFSF+ Sbjct: 69 MGLSEEQVDRFTFVRSNFRYLKNWMQYYGVEYIDGLLADLGVSSHHFDDETRGFSFRFEA 128 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ +GI+A+D++N + + L IL + GE KQ+ RIA AIVK R ++TT D Sbjct: 129 PLDMRMNKRAGITAADILNDYDEERLADILYLYGELKQSRRIASAIVKARGQKTYKTTND 188 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L + I+ +++ + + FQALRI VN+E++ L + L +A + L+ GG L V+++ Sbjct: 189 LLTTIEPFFQWAREKK--DMAKMFQALRIEVNHEMDALKEMLMAATELLRPGGRLSVITY 246 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDR+VK S + + + P F+ + KV+ + ++ N RSRSAK Sbjct: 247 HSLEDRMVKNIMKSGNIEGKVKQDFFGRTETP--FRLVNNKVITASNDEQERNPRSRSAK 304 Query: 311 LRAGMR 316 LR + Sbjct: 305 LRIAEK 310 >gi|325299150|ref|YP_004259067.1| Ribosomal RNA small subunit methyltransferase H [Bacteroides salanitronis DSM 18170] gi|324318703|gb|ADY36594.1| Ribosomal RNA small subunit methyltransferase H [Bacteroides salanitronis DSM 18170] Length = 305 Score = 357 bits (918), Expect = 1e-96, Method: Composition-based stats. Identities = 105/309 (33%), Positives = 160/309 (51%), Gaps = 17/309 (5%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72 T H+PVLL + + +N + +D T G GG+SR + GS + D+D A Sbjct: 5 TKTYHIPVLLHESVDGMNLHENGIYVDVTLGGGGHSREILRRMDKGSRLFGFDQDEDA-- 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQK 129 E +F+ ++ F L++++ GV D ++ DLGVSS +D RGFSF+ Sbjct: 63 ---ERNAPADTRFTFVRSNFRYLRNFLRYYGVEQADAILADLGVSSHHLDDASRGFSFRF 119 Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM+ + ++A+DVVN + L I + GE K + R+A +VK R P T Sbjct: 120 DAPLDMRMNKRAKLTAADVVNTYDESRLADIFYLYGEMKNSRRLASDLVKARAQKPVALT 179 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 DL +++ K + FQALRI VN+E++ L + L +A LK GG L V+ Sbjct: 180 GDLIGIVKPYCP--KEREKKELAKIFQALRIEVNHEMDALKEMLEAAVDVLKPGGRLAVI 237 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 ++HSLEDR+VK + + + A + + P K +VP +E++ N RSRS Sbjct: 238 TYHSLEDRMVKNMMKAGNVEGKAEQDFYGNFRSP---LRTVGKPIVPGEEEIGRNPRSRS 294 Query: 309 AKLRAGMRT 317 AKLR + Sbjct: 295 AKLRIAEKV 303 >gi|254362469|ref|ZP_04978577.1| S-adenosylmethionine-dependent methyltransferase [Mannheimia haemolytica PHL213] gi|153094061|gb|EDN74973.1| S-adenosylmethionine-dependent methyltransferase [Mannheimia haemolytica PHL213] Length = 312 Score = 357 bits (918), Expect = 1e-96, Method: Composition-based stats. Identities = 115/310 (37%), Positives = 169/310 (54%), Gaps = 16/310 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H+ VLL + + L P + +D TFG GG+SR +IA DRDP A++ Q Sbjct: 6 KHITVLLHEAVDGLAIKPNGIYIDGTFGRGGHSRLILSKLGENGRLIATDRDPRAIAEAQ 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +F + FS + + G +DG++ DLGVSS Q+D +RGFSF + G Sbjct: 66 TI---SDPRFQIEHTAFSAIPELCERMGLVGKIDGILLDLGVSSPQLDEAERGFSFMRDG 122 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ--SAPFQTT 188 PLDMRM + G+SA++ + Q + +DL +L GEE+ A RIA A+V + + T Sbjct: 123 PLDMRMDTTKGLSAAEWLAQVSAEDLAWVLKEFGEERFAKRIAQAVVSYNKSANEKISRT 182 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ +I V F K+ HPATRSFQA+RIF+N E++EL + L SA L G L ++ Sbjct: 183 LQLAQIIADAVPF-KDKHKHPATRSFQAIRIFINGELDELEKALNSALTVLAPEGRLSII 241 Query: 249 SFHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 SFHSLEDR+VK+F S V ++ + + K ++P++ ++ N RS Sbjct: 242 SFHSLEDRMVKQFVRKHSKGMDVPRGLPILEAELTKNIPLKTIGKAIMPSEAEIEANARS 301 Query: 307 RSAKLRAGMR 316 RSA LR + Sbjct: 302 RSAVLRIAEK 311 >gi|84625268|ref|YP_452640.1| S-adenosyl-methyltransferase MraW [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188575290|ref|YP_001912219.1| S-adenosyl-methyltransferase MraW [Xanthomonas oryzae pv. oryzae PXO99A] gi|84369208|dbj|BAE70366.1| cell division protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188519742|gb|ACD57687.1| S-adenosyl-methyltransferase MraW [Xanthomonas oryzae pv. oryzae PXO99A] Length = 347 Score = 357 bits (918), Expect = 1e-96, Method: Composition-based stats. Identities = 118/309 (38%), Positives = 174/309 (56%), Gaps = 7/309 (2%) Query: 12 AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDP 68 + HVPVL +V+ L LD TFG GG++R + G ++ +D+DP Sbjct: 10 PVSQPPAAHVPVLYTQVLDGLQVTENGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDP 69 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 A++ ++T + S+ + +F+ L V VDG++ DLGVSS Q+D RGFSF Sbjct: 70 DAIAVAEQTFGG-DARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLDVAGRGFSFG 128 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 K GPLDMRM SG SA+ + QA +++ +L GEE+Q+ RIA AIV RR P Sbjct: 129 KDGPLDMRMDPDSGQSAAQWLAQATDREIADVLWAYGEERQSRRIARAIVARRAEQPLLR 188 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T L+ LI + +++ HPATRSFQA+RI++N E+++L GL +A ALK GG L V Sbjct: 189 TAQLADLIASVMPRG-DSKTHPATRSFQAIRIYINRELDDLETGLDAALAALKPGGRLAV 247 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +SFHSLEDR+VK+F A + + R + + Q ++ + ++ N R+R Sbjct: 248 ISFHSLEDRIVKQFMARYAKAPPSNRRLPEAQPFVPTLQLVS-GAIKADDTELNVNPRAR 306 Query: 308 SAKLRAGMR 316 SA LR + Sbjct: 307 SAVLRVAEK 315 >gi|157373543|ref|YP_001472143.1| S-adenosyl-methyltransferase MraW [Shewanella sediminis HAW-EB3] gi|262826558|sp|A8FQ92|RSMH_SHESH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|157315917|gb|ABV35015.1| S-adenosyl-methyltransferase MraW [Shewanella sediminis HAW-EB3] Length = 314 Score = 357 bits (918), Expect = 1e-96, Method: Composition-based stats. Identities = 119/307 (38%), Positives = 174/307 (56%), Gaps = 13/307 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H+ VLL + +A LN + +D TFG GG+SR K +IA+DRDP A++ ++ Sbjct: 8 HLSVLLTETVAGLNIKEDGIYIDGTFGRGGHSREVLKHLGENGRLIAIDRDPQAIAAAEQ 67 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 D +FS+ F QL YV D G +DGV+ D GVSS Q+D +RGFSF + GP Sbjct: 68 FADDA--RFSIVHGGFGQLATYVEDLGLKGKIDGVLLDFGVSSPQLDDAERGFSFLRDGP 125 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G +A+D + +A ++D+ + GEEK + IA I R+ PF T++L Sbjct: 126 LDMRMDNSQGETAADWIARAEIEDMAWVFKTYGEEKNSRHIARCIAADREKTPFLRTKEL 185 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI + + +K HPATR FQA+RI++N+E+E++ Q L A L G L V+SFH Sbjct: 186 ADLIAR-ISKNKERNKHPATRVFQAIRIYINSELEQIDQALEGALSVLAPHGRLSVISFH 244 Query: 252 SLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK+F V + + + + K + P++E+V N R+RS+ Sbjct: 245 SLEDRMVKRFIRRHCQGESVPHGLPITEAEINKSRLLKGIGKAIKPSEEEVERNTRARSS 304 Query: 310 KLRAGMR 316 LR R Sbjct: 305 VLRIAER 311 >gi|263506507|sp|Q2NZB1|RSMH_XANOM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263506516|sp|B2SNY6|RSMH_XANOP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 337 Score = 357 bits (918), Expect = 1e-96, Method: Composition-based stats. Identities = 118/308 (38%), Positives = 174/308 (56%), Gaps = 7/308 (2%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69 + HVPVL +V+ L LD TFG GG++R + G ++ +D+DP Sbjct: 1 MSQPPAAHVPVLYTQVLDGLQVTENGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDPD 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 A++ ++T + S+ + +F+ L V VDG++ DLGVSS Q+D RGFSF K Sbjct: 61 AIAVAEQTFGG-DARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLDVAGRGFSFGK 119 Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM SG SA+ + QA +++ +L GEE+Q+ RIA AIV RR P T Sbjct: 120 DGPLDMRMDPDSGQSAAQWLAQATDREIADVLWAYGEERQSRRIARAIVARRAEQPLLRT 179 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ LI + +++ HPATRSFQA+RI++N E+++L GL +A ALK GG L V+ Sbjct: 180 AQLADLIASVMPRG-DSKTHPATRSFQAIRIYINRELDDLETGLDAALAALKPGGRLAVI 238 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDR+VK+F A + + R + + Q ++ + ++ N R+RS Sbjct: 239 SFHSLEDRIVKQFMARYAKAPPSNRRLPEAQPFVPTLQLVS-GAIKADDTELNVNPRARS 297 Query: 309 AKLRAGMR 316 A LR + Sbjct: 298 AVLRVAEK 305 >gi|21241542|ref|NP_641124.1| S-adenosyl-methyltransferase MraW [Xanthomonas axonopodis pv. citri str. 306] gi|24212036|sp|Q8PPB5|RSMH_XANAC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|21106893|gb|AAM35660.1| cell division protein [Xanthomonas axonopodis pv. citri str. 306] Length = 342 Score = 357 bits (918), Expect = 1e-96, Method: Composition-based stats. Identities = 123/334 (36%), Positives = 180/334 (53%), Gaps = 11/334 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69 + + HVPVL +V+ L LD TFG GG++R + G ++ +D+DP Sbjct: 1 MSQSPAAHVPVLYTQVLDGLQVTENGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDPE 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 A++ E + S+ + +F+ L V VDG++ DLGVSS Q+D RGFSF K Sbjct: 61 AIAVA-EHSFGGDARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLDVAGRGFSFGK 119 Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM SG SA++ + QA+ +++ +L GEE+Q+ RIA AIV RR P T Sbjct: 120 DGPLDMRMDPDSGQSAAEWLAQASDREIADVLWTYGEERQSRRIARAIVARRAEQPLLRT 179 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ LI + +++ HPATRSFQA+RI +N E+ +L GL +A ALK GG L V+ Sbjct: 180 AQLADLIASVMPRG-DSKTHPATRSFQAIRIHINRELADLEAGLDAALGALKPGGRLAVI 238 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDR+VK+F A + + R + + A Q ++ + ++ N R+RS Sbjct: 239 SFHSLEDRIVKQFMARYAKAPPSNRRLPEAQPFVATLQLVS-GAIKADDAELHVNPRARS 297 Query: 309 AKLRAGMR----TVERSIEDDSFVHLPRLPTLSQ 338 A LR + E + + R PT Sbjct: 298 AVLRVAEKLGLGNGESGMGKGNSAAASRFPTADS 331 >gi|260596507|ref|YP_003209078.1| 16S rRNA m(4)C1402 methyltranserfase [Cronobacter turicensis z3032] gi|260215684|emb|CBA28014.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Cronobacter turicensis z3032] Length = 313 Score = 357 bits (918), Expect = 1e-96, Method: Composition-based stats. Identities = 121/312 (38%), Positives = 178/312 (57%), Gaps = 19/312 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ Sbjct: 6 KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEQGRLLAIDRDPQAIAAAA 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +FS+ FS L DYV ++ +DG++ DLGVSS Q+D +RGFSF + G Sbjct: 66 ---AIDDPRFSIIHGPFSALGDYVRERELQGKIDGILLDLGVSSPQLDDPERGFSFMRDG 122 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + G SA++ + A D+ +L GEE+ A RIA AIV+R + P T++ Sbjct: 123 PLDMRMDPTRGQSAAEWLRNAEEADIAWVLKTFGEERFAKRIARAIVERNRELPMTRTKE 182 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+ A L GG L V+SF Sbjct: 183 LAEVVAAATPI-KDKFKHPATRTFQAVRIWVNSELEEIEQALKGAVDVLAPGGRLSVISF 241 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305 HSLEDRLVK+F +S + + A +++ K ++P + +VA N R Sbjct: 242 HSLEDRLVKRFMREQSRGPQVPAGLPMTEAQLQKLGGRDLRALGK--LMPGEAEVAENPR 299 Query: 306 SRSAKLRAGMRT 317 +RS+ LR RT Sbjct: 300 ARSSVLRIAERT 311 >gi|257125535|ref|YP_003163649.1| S-adenosyl-methyltransferase MraW [Leptotrichia buccalis C-1013-b] gi|257049474|gb|ACV38658.1| S-adenosyl-methyltransferase MraW [Leptotrichia buccalis C-1013-b] Length = 308 Score = 357 bits (917), Expect = 1e-96, Method: Composition-based stats. Identities = 109/307 (35%), Positives = 172/307 (56%), Gaps = 10/307 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQE 76 H PVL ++V+ + V +D T G GG++ + S V+A+D+D A+ ++ Sbjct: 4 HKPVLFDEVMDNIITDKDAVYVDCTLGGGGHTEGILENSSKNSKVVAIDQDVQAIEFAKK 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + Y + +FQ F + V G VD ++ D+GVSS Q+D RGFS++ L Sbjct: 64 RLEKYANKLQIFQDNFRNIDTAVYLAGFEKVDRILMDIGVSSNQLDNAKRGFSYRFEARL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + ISA +V+N + K+L I+ GEE ++ +IA IV+ R+ +TT +L+ Sbjct: 124 DMRMDSNLKISAYEVINNFSEKELADIIYKYGEEPKSRKIAKKIVEYRKIKAIETTTELA 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++ K++ K+ + HPA R+FQA+RIFVN E+E L++ L A K L G L+V++FHS Sbjct: 184 DIVIKSI--GKSMKRHPAKRTFQAIRIFVNKELEILSETLDKAVKLLGKNGKLLVITFHS 241 Query: 253 LEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK+ F I ++ + ITKK +V + ++A N R+ SAKL Sbjct: 242 LEDRIVKEKFREYENPCTCPPDIPICVCGKQSLGKVITKKPIVAKELELAENNRAHSAKL 301 Query: 312 RAGMRTV 318 R R+ Sbjct: 302 RIFERSE 308 >gi|189464532|ref|ZP_03013317.1| hypothetical protein BACINT_00874 [Bacteroides intestinalis DSM 17393] gi|189438322|gb|EDV07307.1| hypothetical protein BACINT_00874 [Bacteroides intestinalis DSM 17393] Length = 304 Score = 357 bits (917), Expect = 1e-96, Method: Composition-based stats. Identities = 104/310 (33%), Positives = 160/310 (51%), Gaps = 16/310 (5%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFA 70 + + HVPVLL + +N P +D TFG GG+SR G ++ D+D A Sbjct: 3 NEELTYHVPVLLMPSVDGMNIRPDGTYIDVTFGGGGHSREILSRLGDGGRLLGFDQDEDA 62 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSF 127 E F+ ++ F L +++ VD ++ DLGVSS D +RGFSF Sbjct: 63 -----ERNIVDNPHFTFVRSNFRYLHNFLRYHNIEEVDSILADLGVSSHHFDDSERGFSF 117 Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + G LDMRM+ +G +A+D++N + + L I + GE K + ++A IVK R Sbjct: 118 RFDGALDMRMNKRAGDTAADIINNYDEERLADIFYLYGELKNSRKLASVIVKARAGQKIT 177 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T + +I+ F + + FQALRI VN E+E L + L +A +ALK GG L+ Sbjct: 178 TIGEFLEVIKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLYAATEALKPGGRLV 235 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+++HSLEDR+VK + + + + + P F+ + KV+VP ++ N RS Sbjct: 236 VITYHSLEDRMVKNIMKTGNVEGKMEKDFFGNVQTP--FRLVNNKVIVPDDAEIERNPRS 293 Query: 307 RSAKLRAGMR 316 RSAKLR + Sbjct: 294 RSAKLRIAEK 303 >gi|325923945|ref|ZP_08185535.1| S-adenosyl-methyltransferase MraW [Xanthomonas gardneri ATCC 19865] gi|325545571|gb|EGD16835.1| S-adenosyl-methyltransferase MraW [Xanthomonas gardneri ATCC 19865] Length = 352 Score = 357 bits (917), Expect = 1e-96, Method: Composition-based stats. Identities = 120/331 (36%), Positives = 180/331 (54%), Gaps = 11/331 (3%) Query: 12 AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDP 68 + HVPVL +V+ L LD TFG GG++R + G ++ +D+DP Sbjct: 10 PVSQPPAAHVPVLYTQVLDGLQVIENGTYLDGTFGRGGHARGVLQHLGPGGRLLVMDKDP 69 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 A++ ++ + S+ + +F+ L V VDG++ DLGVSS Q+D RGFSF Sbjct: 70 EAIAVAEQAFGG-DARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLDVAGRGFSFG 128 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 K GPLDMRM G SA++ + A+ +++ +L GEE+Q+ RIA AIV RR P Sbjct: 129 KDGPLDMRMDPDVGQSAAEWLAHASDREIADVLWTYGEERQSRRIARAIVARRTEQPLLR 188 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T L+ LI + +++ HPATRSFQA+RI++N E+++L GL +A ALK GG L V Sbjct: 189 TAQLAELIASVMPRG-DSKTHPATRSFQAIRIYINRELDDLEAGLDAALGALKPGGRLAV 247 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +SFHSLEDR+VK+F A + + R + + Q +T V ++++ N R+R Sbjct: 248 ISFHSLEDRIVKQFMARYAKAPPSNRRLPEAQPFVPTLQLVT-GAVKADFDELSVNPRAR 306 Query: 308 SAKLRAGMR----TVERSIEDDSFVHLPRLP 334 SA LR + E + + R P Sbjct: 307 SAVLRVAEKLGMENGESGMGKGNSATASRFP 337 >gi|189423747|ref|YP_001950924.1| S-adenosyl-methyltransferase MraW [Geobacter lovleyi SZ] gi|263447561|sp|B3E3Z0|RSMH_GEOLS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|189420006|gb|ACD94404.1| S-adenosyl-methyltransferase MraW [Geobacter lovleyi SZ] Length = 313 Score = 357 bits (917), Expect = 1e-96, Method: Composition-based stats. Identities = 123/307 (40%), Positives = 175/307 (57%), Gaps = 9/307 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 H+ VL +V+ L P PG LD T G GG+S + +I +DRDP A++ Sbjct: 5 HHLSVLAREVMEQLAPRPGGTYLDGTLGGGGHSELILEKIGPDGLLIGIDRDPAALAAAS 64 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E +R + F Q +F L + + +G++ G++ DLGVSS Q+D +RGFSF+ GP Sbjct: 65 ERLRRFGSCFRPLQGSFGDLAELLKQEGINTLDGLLLDLGVSSHQLDTDERGFSFRLDGP 124 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G SA+D++ + +L +I+ GEE+ A +IA IV+ RQ P TT L Sbjct: 125 LDMRMDRSCGDSAADLLQDCSAGELEQIIKEFGEERWAKKIALRIVQTRQETPITTTLQL 184 Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 + L+ T+ RIHPATR+FQALRI VN E+E++ QG+R+ ALKAGG + V+SF Sbjct: 185 ADLVAGTIPRRFHEERIHPATRTFQALRIAVNQELEQVEQGIRAGIAALKAGGRIAVISF 244 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK F + M + +T + V+ E+ N R+RSA Sbjct: 245 HSLEDRIVKHLFREAATGCTCPPRMPYCVCNKKPQLRILTGRPVIAGPEETDRNPRARSA 304 Query: 310 KLRAGMR 316 KLRA + Sbjct: 305 KLRAAEK 311 >gi|330957978|gb|EGH58238.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv. maculicola str. ES4326] Length = 313 Score = 357 bits (917), Expect = 1e-96, Method: Composition-based stats. Identities = 114/312 (36%), Positives = 177/312 (56%), Gaps = 12/312 (3%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAV 71 ++ H+ VLLE+ + L LD TFG GG+SR ++ D+DP A+ Sbjct: 2 NSAFTHITVLLEEAVEALAVRADGCYLDGTFGRGGHSRLILSHLGPDGRLLGFDKDPQAI 61 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSF 127 + GQ + +F + Q +F++L V ++G V G++ DLGVSS Q+D +RGFSF Sbjct: 62 ATGQA-LAAEDGRFVIVQRSFAELGSEVQERGLAGKVSGILLDLGVSSPQLDDPERGFSF 120 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 GPLDMRM + G+SA++ + A +++ R+ GEE+ A R+A+A+V+RR+ PF+ Sbjct: 121 MNDGPLDMRMDPTRGVSAAEFIASAPAEEIARVFKEYGEERFAKRMANAVVQRREIQPFE 180 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T DL+ +++ + + +PATR+FQ LRI VNNE+ +L GL +A L+ GG L+ Sbjct: 181 RTADLAEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAALDTLEIGGRLV 239 Query: 247 VVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFNR 304 V+SFHSLEDR+VK F + G+ + +P P + I K + + N Sbjct: 240 VISFHSLEDRIVKLFMRKLAKGEADNMPRDLPIQFKPFEPKIKIHGKAQFASDAETKANP 299 Query: 305 RSRSAKLRAGMR 316 RSRSA +R + Sbjct: 300 RSRSAVMRVAEK 311 >gi|312959049|ref|ZP_07773568.1| S-adenosyl-L-methionine-dependent methyltransferase [Pseudomonas fluorescens WH6] gi|311286819|gb|EFQ65381.1| S-adenosyl-L-methionine-dependent methyltransferase [Pseudomonas fluorescens WH6] Length = 315 Score = 357 bits (917), Expect = 1e-96, Method: Composition-based stats. Identities = 117/308 (37%), Positives = 178/308 (57%), Gaps = 12/308 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 +H+ VLL++ + L LD TFG GG+SR G ++ D+DP A++ GQ Sbjct: 8 NHITVLLDEAVEALAVRADGCYLDGTFGRGGHSRLILSQLGPGGKLLGFDKDPQAIATGQ 67 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +F + Q +F++L V ++G V GV+ DLGVSS Q+D +RGFSF G Sbjct: 68 A-LAAEDGRFVVVQRSFAELGAEVAERGMAGKVAGVLLDLGVSSPQLDDPERGFSFMNDG 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + G+SA+ + A V+++ R+ GEE+ A R+A A+V+RR+ PF+ T D Sbjct: 127 PLDMRMDPTRGVSAAQFIATAPVEEIARVFKEYGEERFAGRMARAVVERRELQPFERTAD 186 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ +++ + + +PATR+FQ LRI VNNE+ +L GL +A AL+ GG L+V+SF Sbjct: 187 LAEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLVVISF 245 Query: 251 HSLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFNRRSRS 308 HSLEDR+VK F G+ + +P V + I K ++ ++ N RSRS Sbjct: 246 HSLEDRIVKLFMRRLVKGESDNLPRNLPVRFEAFVPKIKIHGKAQFASEAELKANPRSRS 305 Query: 309 AKLRAGMR 316 A +R + Sbjct: 306 AVMRVAEK 313 >gi|311113332|ref|YP_003984554.1| S-adenosyl-methyltransferase MraW [Rothia dentocariosa ATCC 17931] gi|310944826|gb|ADP41120.1| S-adenosyl-methyltransferase MraW [Rothia dentocariosa ATCC 17931] Length = 364 Score = 357 bits (917), Expect = 1e-96, Method: Composition-based stats. Identities = 117/308 (37%), Positives = 179/308 (58%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCG 74 HVPV+L++ + LL P V++D T G GG++ + + SN+ I +DRD A + Sbjct: 53 HVPVMLDRCLELLEPAISRQDAVVIDGTLGMGGHTEAMLERFSNLTVIGIDRDAQAHAIA 112 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E + + ++F + ++D + GV DGV+ DLGVSSMQ+D RGF++ Sbjct: 113 VERLARFGDRFVPVHTVYDHIEDAMSAAGVTSVDGVLLDLGVSSMQLDERSRGFAYSYDA 172 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ ++A VVN+ + L RI+ GEEK A+RIA IV++R+ PF TT + Sbjct: 173 PLDMRMNGDDELTARIVVNEYSENQLRRIIKNWGEEKFAARIAQHIVEQRKHTPFTTTGE 232 Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L + IQK V + + HPA R+FQALRI VN+E+E L + + +A AL+ GG + +S Sbjct: 233 LVAAIQKAVPAAAQRKGGHPAKRTFQALRIEVNHELEALERAVPAALDALRLGGRFVAMS 292 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 +HSLED++VK+ + + + H + IT+ PT+ ++A N R+ SA Sbjct: 293 YHSLEDKIVKRALTEAATSKAPKGFPVELDEHQPTIRVITRGAEPPTEAEIAENPRAASA 352 Query: 310 KLRAGMRT 317 KLRAG + Sbjct: 353 KLRAGEKI 360 >gi|268591763|ref|ZP_06125984.1| S-adenosyl-methyltransferase MraW [Providencia rettgeri DSM 1131] gi|291312724|gb|EFE53177.1| S-adenosyl-methyltransferase MraW [Providencia rettgeri DSM 1131] Length = 317 Score = 357 bits (917), Expect = 1e-96, Method: Composition-based stats. Identities = 122/323 (37%), Positives = 174/323 (53%), Gaps = 22/323 (6%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPF 69 + HV VLL++ + LN P + +D TFG GG+SR +IA+DRDP Sbjct: 1 MTQQQFKHVTVLLDEAVNGLNIKPNGIYIDGTFGRGGHSRLILSQLGENGRLIAIDRDPE 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGF 125 A+ Q +F + FS + +YV ++G +DGV+ DLGVSS Q+D +RGF Sbjct: 61 AIKAAQTI---DDPRFMIKHGPFSAIAEYVEEEGLVGQIDGVLLDLGVSSPQLDDPERGF 117 Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR---Q 181 SF + GPLDMRM + G SA + A D+ +L GEE+ A RIA AIV+R + Sbjct: 118 SFMRDGPLDMRMDPTKGQSAQQWLMDAEADDIAWVLKTFGEERFAKRIARAIVERNHNPE 177 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 P T+ L+ LI K K+ HPATRSFQA+RI++N+E+EE+ + L A L Sbjct: 178 EEPLTRTRHLAELIAKVSPM-KDRHKHPATRSFQAIRIYINSELEEIEKALEGAMNVLAP 236 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPT 296 G L V+SFHSLEDRLVK+F S + + A A + + K + P+ Sbjct: 237 QGRLSVISFHSLEDRLVKRFIRKNSKGPSVPAGIPLTEAQIKELGAAQLRDLGK--MKPS 294 Query: 297 QEDVAFNRRSRSAKLRAGMRTVE 319 + ++ N R+RS+ LR + E Sbjct: 295 ENEIDENPRARSSVLRFAEKAAE 317 >gi|330501916|ref|YP_004378785.1| S-adenosyl-methyltransferase MraW [Pseudomonas mendocina NK-01] gi|328916202|gb|AEB57033.1| S-adenosyl-methyltransferase MraW [Pseudomonas mendocina NK-01] Length = 315 Score = 357 bits (917), Expect = 1e-96, Method: Composition-based stats. Identities = 115/320 (35%), Positives = 182/320 (56%), Gaps = 19/320 (5%) Query: 8 TMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIAL 64 TM+ + H+ VLL++ + L +D TFG GG+SR + G ++ Sbjct: 2 TMTDTL-----RHITVLLDEAVEGLAVRADGCYMDGTFGRGGHSRLILQKLGPGGRLLGF 56 Query: 65 DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDC 120 D+DP A++ G E + +F + Q +F++L D +G V G++ DLGVSS Q+D Sbjct: 57 DKDPLAIATG-EALAAEDGRFVVVQRSFAELGDEAVVRGISGQVSGILLDLGVSSPQLDD 115 Query: 121 GDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFSF GPLDMRM+ +G+SA+D + A+ ++ R++ GEE+ A R+A A+V+R Sbjct: 116 PERGFSFLNDGPLDMRMNPHAGVSAADWIATADEDEIARVMKDYGEERFAKRMARAVVQR 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 R PF T DL+ ++ + + + +PATR+FQ +RI VNNE+ +L +GL +A + L Sbjct: 176 RAERPFTRTADLAKVLTEANPAWEKGK-NPATRAFQGIRIHVNNELGDLERGLEAALETL 234 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSG---KVMAVRHMIPSNAHPAVFQSITKKVVVPT 296 + GG L+V+SFHSLEDR+VK+F ++ + I A + I K V Sbjct: 235 EVGGRLVVISFHSLEDRIVKQFMKRQAKGEADKLPRDLPIIPKAFEPRLKLI-GKPVYAA 293 Query: 297 QEDVAFNRRSRSAKLRAGMR 316 + ++ N RSRSA +R + Sbjct: 294 EAELKANPRSRSAVMRIAEK 313 >gi|68565414|sp|Q5GW34|RSMH_XANOR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 337 Score = 357 bits (917), Expect = 1e-96, Method: Composition-based stats. Identities = 117/308 (37%), Positives = 174/308 (56%), Gaps = 7/308 (2%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69 + HVPVL +V+ L LD TFG GG++R + G ++ +D+DP Sbjct: 1 MSQPPAAHVPVLYTQVLDGLQVTENGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDPE 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 A++ ++T + S+ + +F+ L V VDG++ DLGVSS Q++ RGFSF K Sbjct: 61 AIAVAEQTFGG-DARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLEVAGRGFSFGK 119 Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM SG SA+ + QA +++ +L GEE+Q+ RIA AIV RR P T Sbjct: 120 DGPLDMRMDPDSGQSAAQWLAQATDREIADVLWTYGEERQSRRIARAIVARRAEQPLLRT 179 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ LI + +++ HPATRSFQA+RI++N E+++L GL +A ALK GG L V+ Sbjct: 180 AQLADLIASVMPRG-DSKTHPATRSFQAIRIYINRELDDLETGLDAALAALKPGGRLAVI 238 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDR+VK+F A + + R + + Q ++ + ++ N R+RS Sbjct: 239 SFHSLEDRIVKQFMARYAKAPPSNRRLPEAQPFVPTLQLVS-GAIKADDAELNVNPRARS 297 Query: 309 AKLRAGMR 316 A LR + Sbjct: 298 AVLRVAEK 305 >gi|304386665|ref|ZP_07368947.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis ATCC 13091] gi|304339250|gb|EFM05328.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis ATCC 13091] Length = 328 Score = 357 bits (917), Expect = 1e-96, Method: Composition-based stats. Identities = 116/318 (36%), Positives = 172/318 (54%), Gaps = 13/318 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 MS A + H+ VLL + + L V +D TFG GG+SR +I D Sbjct: 1 MSGAESY---RHITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFD 57 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGD 122 +DP A++ +E + ++ + F+ Q + G VDG +FDLG+SS QID G Sbjct: 58 KDPQAIAVAEE-LARSDKRVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGS 116 Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF+ PLDMRM + G+SA++ + A+ +DL ++ GEE+ + +IA AIV +R Sbjct: 117 RGFSFRFDAPLDMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRA 176 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 +P TT+ L+ ++ + V + + ATR+FQA+RIF+N E+EE+ L LK Sbjct: 177 ESPIDTTRKLAQIVAQNVRTRERGQ-DSATRTFQAIRIFINRELEEVGAVLPQVMCRLKE 235 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDV 300 GG L V++FHSLEDR+VK+F S R A P I + + P + ++ Sbjct: 236 GGRLAVIAFHSLEDRIVKQFVKKYSQHAPLPRWAAVREADLPEPPLKIVGRALKPGEAEI 295 Query: 301 AFNRRSRSAKLRAGMRTV 318 A N R+RSA LR RT Sbjct: 296 AANPRARSAVLRVAERTA 313 >gi|260576880|ref|ZP_05844863.1| S-adenosyl-methyltransferase MraW [Rhodobacter sp. SW2] gi|259020917|gb|EEW24230.1| S-adenosyl-methyltransferase MraW [Rhodobacter sp. SW2] Length = 334 Score = 357 bits (917), Expect = 1e-96, Method: Composition-based stats. Identities = 145/319 (45%), Positives = 190/319 (59%), Gaps = 5/319 (1%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCG 74 HVPVLL ++A + P V LD TFGAGGY+R G+ VI +DRDP A+ Sbjct: 7 PAAPHVPVLLRPLLAAVAPVQ-GVWLDGTFGAGGYARGLLAAGAAKVIGIDRDPLALQMA 65 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 +Y ++ L FS+L D + + +DG+V DLGVSSMQ+D +RGFSF + GPLD Sbjct: 66 AAWAGEYGDRLRLVAGNFSEL-DVLAGEPLDGIVLDLGVSSMQLDLPERGFSFLRDGPLD 124 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRMS G SA+D+VN L IL GEE+ + RIA AIV R AP TT L+ + Sbjct: 125 MRMSQQGDSAADIVNATEEGALADILYTYGEERASRRIAKAIVAARAIAPITTTLRLAEI 184 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 + + K + H ATRSFQA+RI VN E EL +GL +AE+ALK GGLL VV+FHSLE Sbjct: 185 VAGCLPRPKPGQSHAATRSFQAIRIAVNTEFSELVEGLAAAERALKPGGLLAVVTFHSLE 244 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 DR+VK+FF RSG P+ A F +T++ V P ++A N R+RSAKLR Sbjct: 245 DRIVKRFFQLRSGNEANANRYAPAKAEDAPRFDLVTRRAVAPDDAELAENPRARSAKLRV 304 Query: 314 GMRTVERSI-EDDSFVHLP 331 G RT + D + + +P Sbjct: 305 GRRTEAPAGTSDPAALGVP 323 >gi|149190159|ref|ZP_01868435.1| S-adenosyl-methyltransferase MraW [Vibrio shilonii AK1] gi|148836048|gb|EDL53009.1| S-adenosyl-methyltransferase MraW [Vibrio shilonii AK1] Length = 316 Score = 357 bits (917), Expect = 1e-96, Method: Composition-based stats. Identities = 118/323 (36%), Positives = 165/323 (51%), Gaps = 23/323 (7%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 MS + H+ VLL + I L P + +D TFG GG+SR + ++D Sbjct: 1 MSESFQ-----HISVLLHESIDGLAIKPDGIYIDGTFGRGGHSRQILSQLGENGRLYSID 55 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCG 121 RDP A+ + +F++ FS + +Y VDGV+ DLGVSS Q+D Sbjct: 56 RDPQAIEEAGKI---DDPRFTIIHGPFSGMAEYAERYDLVGKVDGVLLDLGVSSPQLDDA 112 Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF K GPLDMRM SG+ S+ + QA + D+T ++ GE+K A RIA AIV R Sbjct: 113 ERGFSFMKDGPLDMRMDPTSGMPVSEWLAQAELDDITWVIREFGEDKHARRIAKAIVAHR 172 Query: 181 Q---SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 + P T L+ LI S + HPATRSFQA RI++N+E+EE+ L+ A Sbjct: 173 EDEEKEPLTRTGQLAKLISDAAPKSFKEKKHPATRSFQAFRIYINSELEEIDTALKGAAS 232 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVV 293 L G L V+SFHSLEDR+VK+F S + + K + Sbjct: 233 ILAPEGRLSVISFHSLEDRMVKRFMRKESRGPQVPHGIPMTEDQIRALGSANLKTIGKAL 292 Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316 P+ ++V N RSRS+ LR + Sbjct: 293 KPSDQEVEMNTRSRSSVLRVAEK 315 >gi|261391925|emb|CAX49387.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis 8013] Length = 328 Score = 357 bits (917), Expect = 1e-96, Method: Composition-based stats. Identities = 117/318 (36%), Positives = 173/318 (54%), Gaps = 13/318 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 MS A + H+ VLL + + L V +D TFG GG+SR +I D Sbjct: 1 MSGAESY---RHITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFD 57 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGD 122 +DP A++ +E + ++ + F+ Q + G VDG +FDLG+SS QID G Sbjct: 58 KDPQAIAVAEE-LARSDKRVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGS 116 Query: 123 RGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF+ PLDMRM G+SA++ + A+ +DL ++ GEE+ + +IA AIV +R Sbjct: 117 RGFSFRFDAPLDMRMDTMRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRA 176 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 +P TT+ L+ ++ + V + + PATR+FQA+RIF+N E+EE+ L LK Sbjct: 177 ESPIDTTRKLAQIVAQNVRTRERGQ-DPATRTFQAVRIFINRELEEVGAVLPQVMCRLKE 235 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDV 300 GG L V++FHSLEDR+VK+F S R A P + I + + P + ++ Sbjct: 236 GGRLAVIAFHSLEDRIVKQFVKKYSQHAPLPRWAAVREADLPELPLKIVGRALKPGEAEI 295 Query: 301 AFNRRSRSAKLRAGMRTV 318 A N R+RSA LR RT Sbjct: 296 AANPRARSAVLRVAERTA 313 >gi|170720122|ref|YP_001747810.1| S-adenosyl-methyltransferase MraW [Pseudomonas putida W619] gi|262825121|sp|B1J1Y2|RSMH_PSEPW RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|169758125|gb|ACA71441.1| S-adenosyl-methyltransferase MraW [Pseudomonas putida W619] Length = 315 Score = 357 bits (917), Expect = 1e-96, Method: Composition-based stats. Identities = 114/308 (37%), Positives = 175/308 (56%), Gaps = 12/308 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 +H+ VLL++ + L LD TFG GG+SR ++ D+DP A++ GQ Sbjct: 8 NHITVLLDEAVEALALRADGCYLDGTFGRGGHSRLILSKLGPQGRLLGFDKDPQAIATGQ 67 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +F + Q +F++L V ++G V G++ DLGVSS Q+D +RGFSF G Sbjct: 68 A-LAAEDGRFVIVQRSFAELGAEVAERGLAGKVSGILLDLGVSSPQLDDPERGFSFLNDG 126 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ GISA++ + A V+++ R+ GEE+ A R+A A+V+RR+ PF T D Sbjct: 127 PLDMRMNPDQGISAAEFIATAPVEEIARVFKEYGEERFAGRMARAVVERREKQPFTRTAD 186 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ +++ + + +PATR+FQ LRI VNNE+ +L GL +A AL+ GG L V+SF Sbjct: 187 LAEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLAVISF 245 Query: 251 HSLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFNRRSRS 308 HSLEDR+VK F G+ + +P + + K ++ ++ N RSRS Sbjct: 246 HSLEDRIVKLFMRKLVKGEADNLPRNLPVQHKVFEPKIRLIGKAQFASEAELKANPRSRS 305 Query: 309 AKLRAGMR 316 A +R + Sbjct: 306 AVMRVAEK 313 >gi|325275020|ref|ZP_08141013.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas sp. TJI-51] gi|324099848|gb|EGB97701.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas sp. TJI-51] Length = 315 Score = 357 bits (917), Expect = 1e-96, Method: Composition-based stats. Identities = 114/308 (37%), Positives = 175/308 (56%), Gaps = 12/308 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 +H+ VLL++ + L LD TFG GG+SR ++ D+DP A++ GQ Sbjct: 8 NHITVLLDEAVEALALRADGCYLDGTFGRGGHSRLILSKLGPQGRLLGFDKDPQAIATGQ 67 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +F + Q +F++L V ++G V GV+ DLGVSS Q+D +RGFSF G Sbjct: 68 A-LAAEDGRFVIVQRSFAELGAEVAERGLHGKVSGVLLDLGVSSPQLDDPERGFSFLNDG 126 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ G+SA++ + A V+++ R+ GEE+ A R+A A+V+RR+ PF T D Sbjct: 127 PLDMRMNPDQGVSAAEFIATAPVEEIARVFKEYGEERFAGRMARAVVERREKQPFTRTAD 186 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ +++ + + +PATR+FQ LRI VNNE+ +L GL +A AL+ GG L V+SF Sbjct: 187 LAEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLAVISF 245 Query: 251 HSLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQ-SITKKVVVPTQEDVAFNRRSRS 308 HSLEDR+VK F G+ + +P + + K ++ ++ N RSRS Sbjct: 246 HSLEDRIVKLFMRKLVKGEADNLPRNLPVQHKVFEPKVKLIGKAQFASEAELKANPRSRS 305 Query: 309 AKLRAGMR 316 A +R + Sbjct: 306 AVMRVAEK 313 >gi|313665282|ref|YP_004047153.1| S-adenosyl-methyltransferase MraW [Mycoplasma leachii PG50] gi|312950000|gb|ADR24596.1| S-adenosyl-methyltransferase MraW [Mycoplasma leachii PG50] Length = 309 Score = 357 bits (917), Expect = 1e-96, Method: Composition-based stats. Identities = 105/310 (33%), Positives = 162/310 (52%), Gaps = 14/310 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 H+PVLL++ I LN P + +D T G G++ + S + A+D+D A+ + Sbjct: 3 KHIPVLLDESIKYLNIKPNGIYVDCTLGRAGHASEILQRLSQNGFLYAIDQDKVAIDQAK 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + F L Q FS L + VDG+++DLGVSS Q+D G RGFS++ GP Sbjct: 63 EKLEKISNNFFLIQGNFSNLSALLAINHVFNVDGILYDLGVSSPQLDIGSRGFSYKIDGP 122 Query: 133 LDMRMS--CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM + ++A +VNQ + IL GEE A IA IV R P +T Sbjct: 123 LDMRMDITNNSLTADIIVNQYPETQIADILFKYGEESFAKNIAKKIVLSR---PINSTLK 179 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I+ + + HPA ++FQALRIF+NNE+ L L+ A + L + G + V++ Sbjct: 180 LVEVIKSALPQKVLKQKKHPAKKTFQALRIFINNELIVLENSLKQALELLNSKGRICVIT 239 Query: 250 FHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 FHSLE+++VK F + + + ++ + F+ + KK + P+ ++ N RS Sbjct: 240 FHSLEEKIVKNIFNNSTNYFQEQLFNNLPIKANLNSQFKLVIKKPIKPSLLELENNYRSH 299 Query: 308 SAKLRAGMRT 317 SAKL + Sbjct: 300 SAKLWVIEKN 309 >gi|317493287|ref|ZP_07951709.1| S-adenosyl-methyltransferase MraW [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918680|gb|EFV40017.1| S-adenosyl-methyltransferase MraW [Enterobacteriaceae bacterium 9_2_54FAA] Length = 314 Score = 357 bits (917), Expect = 1e-96, Method: Composition-based stats. Identities = 120/320 (37%), Positives = 183/320 (57%), Gaps = 19/320 (5%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPF 69 + H VLL++ + LN + +D TFG GG+SR ++A+DRDP Sbjct: 1 MSEENYQHKTVLLDEAVNGLNLRSNGIYIDGTFGRGGHSRLILSQLGPEGRLLAIDRDPQ 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGF 125 A++ E +FS+ FS + YV + G ++GV+ DLGVSS Q+D +RGF Sbjct: 61 AIAAAAEI---TDPRFSIIHGPFSDMATYVRELGLEGQINGVLLDLGVSSPQLDDAERGF 117 Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF + GPLDMRM + G+SA++ + +A +D+ +L GEE+ A RIA AIV+R + P Sbjct: 118 SFMRDGPLDMRMDPTRGLSAAEWLMKAEEEDIAWVLKTFGEERFAKRIARAIVERNRLEP 177 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 T +L++LI F + ++ HPATRSFQA+RI++N+E+EE+ + L A + L G Sbjct: 178 MTRTHELATLIANASPFREKHK-HPATRSFQAIRIYINSELEEIERALNGALEILSPEGR 236 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQED 299 L V+SFHSLEDR+VK+F S + + A +++ K + P+ ++ Sbjct: 237 LSVISFHSLEDRIVKQFIRHHSRGPQVPAGIPLTEAQLRSQGGRKLKALGK--MKPSSDE 294 Query: 300 VAFNRRSRSAKLRAGMRTVE 319 V+ N R+RS+ LR RTVE Sbjct: 295 VSANPRARSSVLRFAERTVE 314 >gi|238752424|ref|ZP_04613901.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia rohdei ATCC 43380] gi|238709357|gb|EEQ01598.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia rohdei ATCC 43380] Length = 320 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 122/314 (38%), Positives = 177/314 (56%), Gaps = 19/314 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H VLL++ + LN + +D TFG GG+SR +IA+DRDP AV + Sbjct: 13 KHTSVLLDEAVNGLNIRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDRDPLAVEAAK 72 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +FS+ FS+L YV + +DGV+ DLGVSS Q+D +RGFSF + G Sbjct: 73 SI---TDPRFSIVHGPFSELAHYVRELDLVGRIDGVLLDLGVSSPQLDDPERGFSFMRDG 129 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + G+SA+D + +A+ +D+ +L GEE+ A R+A AIV+R + P T++ Sbjct: 130 PLDMRMDPTRGLSAADWLMKASAEDIAWVLKTFGEERFAKRLARAIVERNLTQPMTRTKE 189 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ LI F ++ HPATRSFQA+RI++N+E+EE+ + L A + L G L V+SF Sbjct: 190 LADLIANASPF-RDKHKHPATRSFQAIRIYINSELEEIERALDGALEVLAPEGRLSVISF 248 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNRR 305 HSLEDR+VK F S + + A +S+ K ++P +VA N R Sbjct: 249 HSLEDRIVKNFIRHHSRGPQVPAGLPLTEAQLRSMGGRTLKSVGK--MMPPDAEVAENPR 306 Query: 306 SRSAKLRAGMRTVE 319 +RS+ LR R E Sbjct: 307 ARSSVLRFAERIKE 320 >gi|270263951|ref|ZP_06192219.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Serratia odorifera 4Rx13] gi|270042144|gb|EFA15240.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Serratia odorifera 4Rx13] Length = 313 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 119/309 (38%), Positives = 176/309 (56%), Gaps = 15/309 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H VLL++ + LN + +D TFG GG+SR ++A+DRDP A++ + Sbjct: 6 KHTTVLLDEAVNGLNIRSNGIYIDGTFGRGGHSRLILSQLGPEGRLLAIDRDPQAIAAAK 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +F++ FS L YV ++ +DGV+ DLGVSS Q+D +RGFSF + G Sbjct: 66 SI---EDPRFTIVHGPFSDLSHYVRERELVGQIDGVLLDLGVSSPQLDDAERGFSFMRDG 122 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S G SAS+ + +A D+ +L GEE+ A RIA AIV+R + P T++ Sbjct: 123 PLDMRMDPSSGQSASEWLLKAEADDIAWVLKTFGEERFAKRIARAIVERNRVEPMTRTKE 182 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ LI F + ++ HPATRSFQA+RI++N+E+EE+ + L A + L G L ++SF Sbjct: 183 LADLIANASPFREKHK-HPATRSFQAIRIYINSELEEIERALDGALEVLAPQGRLSIISF 241 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNRRSR 307 HSLEDR+VK+F S + + T K + +P+Q++VA N R+R Sbjct: 242 HSLEDRIVKRFMRHHSRGAQVPAGLPLTEEQLRGMGGRTLKALGKMMPSQDEVAENPRAR 301 Query: 308 SAKLRAGMR 316 S+ LR R Sbjct: 302 SSVLRIAER 310 >gi|254441632|ref|ZP_05055125.1| S-adenosyl-methyltransferase MraW [Octadecabacter antarcticus 307] gi|198251710|gb|EDY76025.1| S-adenosyl-methyltransferase MraW [Octadecabacter antarcticus 307] Length = 325 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 146/325 (44%), Positives = 194/325 (59%), Gaps = 8/325 (2%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSC 73 H+PVL+ +IA +P LDATFGAGGY++ G++ VI +DRDP Sbjct: 5 DDTPPHIPVLIGPLIAACSPIS-GTWLDATFGAGGYTQRLLAAGADKVIGVDRDPAVFKM 63 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 Q +L + TFS L D +DG+V DLGVSSMQID +RGFSF + GPL Sbjct: 64 AQ--WAADNPAITLVEDTFSNLDTIASD--LDGIVLDLGVSSMQIDQAERGFSFMRDGPL 119 Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 DMRM G SA+D+VN+A+ DL IL I GEE+ + RIA IV++R P TT L+ Sbjct: 120 DMRMGQEGQSAADIVNEADETDLADILYIYGEERASRRIARKIVEQRDREPITTTLRLAK 179 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 LI+ + SK + HPATRSFQA+RI VN+E +LA+GL +AE+ALK GG L +V+FHS+ Sbjct: 180 LIEGCLPRSKQGQSHPATRSFQAIRIAVNDEYGQLAEGLEAAERALKPGGYLAIVTFHSV 239 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPS-NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 EDR+VK+F R G + P F+ ITKK +++VA N RSRSAKLR Sbjct: 240 EDRMVKRFLQQRGGGMGNANRYSPVLETEKPSFEIITKKAKAADEDEVAQNPRSRSAKLR 299 Query: 313 AGMRTVERSIE-DDSFVHLPRLPTL 336 RT + D S + +P+L + Sbjct: 300 VARRTDAPAGALDRSKIGMPQLKAI 324 >gi|238761549|ref|ZP_04622524.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia kristensenii ATCC 33638] gi|238700063|gb|EEP92805.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia kristensenii ATCC 33638] Length = 320 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 120/312 (38%), Positives = 173/312 (55%), Gaps = 15/312 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H VLL++ + LN + +D TFG GG+SR +IA+DRDP A+ + Sbjct: 13 KHTSVLLDEAVNGLNIRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDRDPQAIEAAK 72 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +FS+ FS L YV + ++GV+ DLGVSS Q+D +RGFSF + G Sbjct: 73 SI---TDPRFSIVHGPFSDLAHYVRELDLVGRINGVLLDLGVSSPQLDDPERGFSFMRDG 129 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + G+SA+D + +A D+ +L GEE+ A R+A AIV+R + P T++ Sbjct: 130 PLDMRMDPTRGLSAADWLMKAGADDIAWVLKTFGEERFAKRLAKAIVERNLTQPMTRTKE 189 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ LI F + ++ HPATRSFQA+RI++N+E+EE+ + L A + L G L V+SF Sbjct: 190 LADLIANASPFREKHK-HPATRSFQAIRIYINSELEEIERALDGALEVLAPEGRLSVISF 248 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV---VVPTQEDVAFNRRSR 307 HSLEDR+VK F S + + A T K ++P +VA N R+R Sbjct: 249 HSLEDRIVKNFIRHHSRGPQVPAGLPLTEAQLRSMGGRTLKSAGKMMPPDAEVAENPRAR 308 Query: 308 SAKLRAGMRTVE 319 S+ LR R E Sbjct: 309 SSVLRFAERIKE 320 >gi|307564714|ref|ZP_07627244.1| S-adenosyl-methyltransferase MraW [Prevotella amnii CRIS 21A-A] gi|307346642|gb|EFN91949.1| S-adenosyl-methyltransferase MraW [Prevotella amnii CRIS 21A-A] Length = 318 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 118/312 (37%), Positives = 174/312 (55%), Gaps = 15/312 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFA---VSC 73 HVPVLL++ + LN G + +D TFG GG+SR S ++ + D+D A + Sbjct: 9 HVPVLLKESVDGLNIRKGGIYVDVTFGGGGHSREILSHLSGDAHLYSFDQDLDAEQNIKY 68 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKS 130 E+ ++ ++F+ ++ F L++++ GVD G++ DLGVSS D +RGFSF+ Sbjct: 69 LTESDKELSKKFTFVRSNFRYLKNWMRYYGVDKIDGLIADLGVSSHHFDDENRGFSFRFD 128 Query: 131 -GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM+ SG A DV+N +DL R+ + GE KQ+ RIA AIVK R + +TT Sbjct: 129 DAPLDMRMNKESGKQAFDVLNDYKEEDLARLFYVYGELKQSKRIAAAIVKGRANKAIRTT 188 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 D ++ +F + + FQALRI VN E++ L + L SA + L GG L V+ Sbjct: 189 TDFLKIVNP--FFMRVREKKDMAKLFQALRIEVNQEMQALTKMLTSAIELLAPGGRLSVI 246 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 ++HSLEDRLVK F S + + + P F+ + KV++ T E++ N RSRS Sbjct: 247 TYHSLEDRLVKNFMKSGNAEGKISQDFFGRIKTP--FKLVNNKVIIATDEEIERNPRSRS 304 Query: 309 AKLRAGMRTVER 320 AKLR R E Sbjct: 305 AKLRIAERKHEE 316 >gi|210634276|ref|ZP_03298049.1| hypothetical protein COLSTE_01971 [Collinsella stercoris DSM 13279] gi|210158878|gb|EEA89849.1| hypothetical protein COLSTE_01971 [Collinsella stercoris DSM 13279] Length = 306 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 112/305 (36%), Positives = 167/305 (54%), Gaps = 12/305 (3%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETM-- 78 +L++V+ L + G V D T G G+S ++ +D+D A+ + + Sbjct: 1 MLQEVLEQLQLSAGSVACDCTLGGAGHSVRMAAQVGTEGLLLGIDQDDMALEAAGKRLDA 60 Query: 79 RDYKEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 L + F L + + GVDG +FDLGVSS Q+D RGFS+ + PLDM Sbjct: 61 EAPGTPHKLLKGNFGDLDELLCSAQVPGVDGFLFDLGVSSPQLDIPGRGFSYNEDAPLDM 120 Query: 136 RMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 RM + ++A++V+N DL RIL I GEEK A +IA IV+RRQ AP TT D Sbjct: 121 RMDPGTNTLNAAEVLNTYTEADLARILRIYGEEKFARQIAREIVRRRQVAPLATTGDFVD 180 Query: 194 LIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ + + + + HPA RSFQA+RI VN+E++ L +GL +A + L G + V+S+HS Sbjct: 181 VIKAGIPAAARRHGGHPAKRSFQAIRIEVNHELDVLERGLEAAVRWLNPSGRVCVISYHS 240 Query: 253 LEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK+ F S + + + + T+K +V T E+VA N R+RSAK+ Sbjct: 241 LEDRIVKRLFQELSQGCTCPPDIPVCVCGNVPIVKVTTRKPLVATAEEVARNPRARSAKI 300 Query: 312 RAGMR 316 R R Sbjct: 301 RCAER 305 >gi|323497887|ref|ZP_08102896.1| 16S rRNA m(4)C1402 methyltranserfase [Vibrio sinaloensis DSM 21326] gi|323316932|gb|EGA69934.1| 16S rRNA m(4)C1402 methyltranserfase [Vibrio sinaloensis DSM 21326] Length = 316 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 125/325 (38%), Positives = 177/325 (54%), Gaps = 27/325 (8%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 M+ A H+ VLL + I L P + +D TFG GG+SR+ + ++D Sbjct: 1 MTEAF-----KHISVLLHESIDGLAIKPDGIYIDGTFGRGGHSRTILSKLGENGRLYSID 55 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCG 121 RDP A++ + +F++ FS + DY D VDGV+ DLGVSS Q+D Sbjct: 56 RDPQAIAEANKI---DDPRFTIIHGPFSGMADYAKDYDLVGKVDGVLLDLGVSSPQLDDA 112 Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF K GPLDMRM SGI S + +A++ D+T ++ GE+K A RIA AIV R Sbjct: 113 ERGFSFMKDGPLDMRMDPTSGIPVSQWLLEADLDDITWVIREFGEDKHARRIAKAIVAYR 172 Query: 181 QSA---PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 ++ P T L+ LI + S + HPATR+FQA RI++N+E+EE+ L+ A Sbjct: 173 ENEENEPLTRTGQLAKLISEAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAAS 232 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHP------AVFQSITKK 291 L G L V+SFHSLEDR+VK+F S K V H IP A + + K Sbjct: 233 ILAPEGRLSVISFHSLEDRMVKRFIRKES-KGPEVPHGIPLTEDQIKAMGSANLKPV-GK 290 Query: 292 VVVPTQEDVAFNRRSRSAKLRAGMR 316 + P++++V N RSRS+ LR + Sbjct: 291 AIKPSKQEVEMNARSRSSVLRLAEK 315 >gi|148556856|ref|YP_001264438.1| S-adenosyl-methyltransferase MraW [Sphingomonas wittichii RW1] gi|262826617|sp|A5VDD4|RSMH_SPHWW RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|148502046|gb|ABQ70300.1| S-adenosyl-methyltransferase MraW [Sphingomonas wittichii RW1] Length = 322 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 137/314 (43%), Positives = 195/314 (62%), Gaps = 10/314 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQ 75 T HVPVL+++VIA L PA G+ +D TFGAGGY+R+ + G+ V A DRDP A++ G+ Sbjct: 3 TTAPHVPVLIDEVIAGLEPATGETHVDGTFGAGGYTRALLQAGARVYAFDRDPDAIAEGR 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + L FS++ + + ++G VDGV D+GVSSMQ+D DRGFSFQ GP Sbjct: 63 ALEDGQDGRLILVPERFSRMAEALNERGIDQVDGVTLDIGVSSMQLDRADRGFSFQADGP 122 Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 LDMRM SG+SA+D VN A+ ++ +L LGEE +A R+A AIV+ R P T +L+ Sbjct: 123 LDMRMEKSGMSAADFVNTADEAEIADVLHDLGEEPRARRVARAIVQAR---PITRTSELA 179 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++++ + + + PATR+FQA+RI +N E++EL QGL +AE+ L+ GG L VVSFHS Sbjct: 180 EVVRRALGHKPHEKKDPATRTFQAIRIHLNAELDELEQGLAAAERVLRPGGRLAVVSFHS 239 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIP---SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 +EDR+VK+F RSG A +P + F+++ K V + ++A N RSRSA Sbjct: 240 IEDRIVKRFLRDRSGATPAGSRHLPDARAGGPRPSFEAVA-KPVRAGEAELARNPRSRSA 298 Query: 310 KLRAGMRTVERSIE 323 LR RT Sbjct: 299 TLRVARRTAAAPWG 312 >gi|170016882|ref|YP_001727801.1| S-adenosyl-methyltransferase MraW [Leuconostoc citreum KM20] gi|263456317|sp|B1MXV5|RSMH_LEUCK RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|169803739|gb|ACA82357.1| S-adenosyl-methyltransferase MraW [Leuconostoc citreum KM20] Length = 313 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 103/308 (33%), Positives = 162/308 (52%), Gaps = 10/308 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76 +HV VLL + +ALL P +DAT G GG++ K + + D+D A+ Q Sbjct: 5 EHVTVLLHEAVALLAINPTGTYVDATLGGGGHTGEILKQLTTGKLYSFDQDDTAIKYNQT 64 Query: 77 TMRD--YKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 D + L F QL+ + ++ VDG+V+DLGVSS+Q D G RGFS+ Sbjct: 65 RYADEIAAGKLILIHQNFRQLKVALAEQHVTAVDGIVYDLGVSSVQFDDGQRGFSYNYDA 124 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM ++A +VN D+ R+L GE++ ++A I + R P TT + Sbjct: 125 ELDMRMDQRQTLTAKTIVNDWPFNDILRVLSRYGEDRFPKQVARKIEQHRDKGPINTTFE 184 Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I++ + ++ HPA R+FQALR+ VN+E+ L L A + L G + V++ Sbjct: 185 LVDIIKEAIPAPARRKGGHPAKRTFQALRVAVNDELGALEDSLTQALELLAPSGRISVIT 244 Query: 250 FHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 F SLEDRLVK+ F ++ + + ++ +T+K ++P++ ++ N RS S Sbjct: 245 FQSLEDRLVKQMFREKTSMPDLPAGLPVLPGQFEPDYKLLTRKPILPSETEMTDNHRSES 304 Query: 309 AKLRAGMR 316 AKLR R Sbjct: 305 AKLRGIER 312 >gi|329122136|ref|ZP_08250744.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Dialister micraerophilus DSM 19965] gi|327466943|gb|EGF12459.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Dialister micraerophilus DSM 19965] Length = 310 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 101/308 (32%), Positives = 169/308 (54%), Gaps = 10/308 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 HV VL ++I+ + V D T G G+ + G+ +I +D+D A+ + Sbjct: 4 KHVTVLRREMISAILTDKNGVYADCTLGGAGHLSLLSEKVENGALLIGIDQDLDALKAAE 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 M+D + + FS +++ + +K ++G +FDLGVSS Q+D +RGFS+ G Sbjct: 64 LRMKDCTCNLNFVHSNFSNIKNILSEKNLNQINGFIFDLGVSSYQLDEANRGFSYMHEGR 123 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ S ++A DVVN+ + + + I+ GEE+ A RIA IV R++ +TT +L Sbjct: 124 LDMRMNQNSELTAHDVVNKYSEEKIAFIIKEYGEERWAKRIAEFIVDYRKNKIIETTGEL 183 Query: 192 SSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 S+I+ + ++ N HPA R+FQA+RI VNNE+ + + L +GG + +++F Sbjct: 184 VSIIKAAIPLGARKNGPHPAKRTFQAIRIEVNNELGIIESTINDCVDCLVSGGRIGIITF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK+ F + + + + + H + + + PT E++A N R+RSA Sbjct: 244 HSLEDRIVKRTFKNLAKQCICPPEFPLCVCNHQRKIKLLGNG-IRPTDEEIAENPRARSA 302 Query: 310 KLRAGMRT 317 LR + Sbjct: 303 ILRVAEKI 310 >gi|281424950|ref|ZP_06255863.1| S-adenosyl-methyltransferase MraW [Prevotella oris F0302] gi|281400794|gb|EFB31625.1| S-adenosyl-methyltransferase MraW [Prevotella oris F0302] Length = 315 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 110/310 (35%), Positives = 167/310 (53%), Gaps = 17/310 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 HVPVLL+ + LN G + +D TFG GG+SR +++ + D+D A Sbjct: 9 HVPVLLKPSVDGLNIQSGGIYVDVTFGGGGHSREILSRLDNQAHLYSFDQDADAEQNVMH 68 Query: 77 TMRD------YKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSF 127 +F+ ++ F L++++ GV DG++ DLGVSS D RGFSF Sbjct: 69 REGSTEKRFVDDARFTFVRSNFRYLKNWMRYYGVEKIDGLLADLGVSSHHFDDESRGFSF 128 Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + PLDMRM+ +G++A+DVVN + + L + + GE KQ+ RIA A+VK R Sbjct: 129 RFDAPLDMRMNKRAGLTAADVVNDYDEEALANLFYLYGELKQSRRIAAALVKARAQQRIA 188 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 TTQD + F + + FQALRI VN+E++ L + L+SA + L++GG L Sbjct: 189 TTQDFLKATEPL--FKREREKKDMAKLFQALRIEVNHEMDALKEMLQSATELLRSGGRLS 246 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+++HSLEDR+VK + + + V+ P F + KV+VP+ ++ N RS Sbjct: 247 VITYHSLEDRIVKNMMKAGNAEGKKVQDFYGRIETP--FNLVNNKVIVPSADEQQENPRS 304 Query: 307 RSAKLRAGMR 316 RSAKLR + Sbjct: 305 RSAKLRIAEK 314 >gi|325925694|ref|ZP_08187072.1| S-adenosyl-methyltransferase MraW [Xanthomonas perforans 91-118] gi|325543910|gb|EGD15315.1| S-adenosyl-methyltransferase MraW [Xanthomonas perforans 91-118] Length = 347 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 117/309 (37%), Positives = 171/309 (55%), Gaps = 7/309 (2%) Query: 12 AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDP 68 + HVPVL +V+ L LD TFG GG++R + G ++ +D+DP Sbjct: 10 PVSQPPAAHVPVLYTQVLDGLQVTENGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDP 69 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 A++ E + S+ + +F+ L V VDG++ DLGVSS Q+D RGFSF Sbjct: 70 EAIAVA-EHSFGGDARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLDVAGRGFSFG 128 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 K GPLDMRM +G SA+ + QA+ +++ +L GEE+Q+ RIA AIV RR P Sbjct: 129 KDGPLDMRMDPDNGQSAAQWLAQASEREIADVLWTYGEERQSRRIARAIVARRAEQPLLR 188 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T L+ LI + +++ HPATRSFQA+RI +N E+ +L GL +A ALK GG L V Sbjct: 189 TAQLADLIASVMPRG-DSKTHPATRSFQAIRIHINRELADLEAGLDAALDALKPGGRLAV 247 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +SFHSLEDR+VK+F A + + R + + Q ++ + ++ N R+R Sbjct: 248 ISFHSLEDRIVKQFMARYAKAPPSNRRLPEAQPFVPTLQLVS-GAIKADDAELIVNPRAR 306 Query: 308 SAKLRAGMR 316 SA LR + Sbjct: 307 SAVLRVAEK 315 >gi|320530962|ref|ZP_08031995.1| S-adenosyl-methyltransferase MraW [Selenomonas artemidis F0399] gi|320136827|gb|EFW28776.1| S-adenosyl-methyltransferase MraW [Selenomonas artemidis F0399] Length = 310 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 107/307 (34%), Positives = 155/307 (50%), Gaps = 10/307 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQ 75 HV VL + +A L+ P +D T GA G++ +I +D+D A++ Q Sbjct: 4 HHVSVLPAETVAALSVVPEGTYVDCTLGAAGHAGRIAAQLSPAGRLIGIDQDETAIAAAQ 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + SL F L + +GV DG++FDLGVSS QID RGFS+ + P Sbjct: 64 VRLASAACRVSLVHDNFRNLTAILTAEGVSAVDGILFDLGVSSPQIDTAARGFSYMQDAP 123 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + SA VVN+ + LT + GEE+ A RIA I R+ P +TT +L Sbjct: 124 LDMRMDRRAARSAYTVVNEYSAARLTELFYDYGEERWAKRIAAFIEAARKERPIETTGEL 183 Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I + V + HPA R FQA+RI VN E+ L + +A LK GG + V++F Sbjct: 184 VEIIDRAVPKKVRAKGGHPAKRVFQAIRIEVNEELTILPDAVTAAVHTLKPGGRIAVITF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK+ + + H + H + I K + + A N R++SA Sbjct: 244 HSLEDRIVKRTMQQLARGCICPPHTPVCICGHTPELRLI-GKAQTASLAECAANARAKSA 302 Query: 310 KLRAGMR 316 KLR + Sbjct: 303 KLRVAEK 309 >gi|260775374|ref|ZP_05884271.1| S-adenosyl-methyltransferase MraW [Vibrio coralliilyticus ATCC BAA-450] gi|260608555|gb|EEX34720.1| S-adenosyl-methyltransferase MraW [Vibrio coralliilyticus ATCC BAA-450] Length = 316 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 120/313 (38%), Positives = 168/313 (53%), Gaps = 18/313 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H+ VLL + I L P +D TFG GG+SR + ++DRDP A++ Q Sbjct: 6 KHISVLLHESIDGLAIKPDGTYIDGTFGRGGHSRQILSQLGEQGRLFSIDRDPQAIAEAQ 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +F++ FS + Y ++G VDGV+ DLGVSS Q+D +RGFSF K G Sbjct: 66 TI---DDPRFTIIHGPFSGMAKYAEERGLVGQVDGVLLDLGVSSPQLDDAERGFSFMKDG 122 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---PFQT 187 PLDMRM SGI S + +A++ D+T ++ GE+K A RIA AIV R++ P Sbjct: 123 PLDMRMDPTSGIPVSQWLMEADLDDITWVIREFGEDKHARRIAKAIVAYRENEENEPLTR 182 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T L+ LI S + HPATRSFQA RI++N+E+EE+ L+ A L G L V Sbjct: 183 TGQLAKLISDAAPKSFKEKKHPATRSFQAFRIYINSELEEIDTALKGAASILAPEGRLSV 242 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT----KKVVVPTQEDVAFN 303 +SFHSLEDR+VK+F S + + A S K + P++++V N Sbjct: 243 ISFHSLEDRMVKRFIRKESKGPEVPHGIPMTEAQIKALGSANLKPIGKAIKPSKQEVDIN 302 Query: 304 RRSRSAKLRAGMR 316 RSRS+ LR + Sbjct: 303 TRSRSSVLRIAEK 315 >gi|325269666|ref|ZP_08136279.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Prevotella multiformis DSM 16608] gi|324988034|gb|EGC20004.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Prevotella multiformis DSM 16608] Length = 314 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 114/306 (37%), Positives = 170/306 (55%), Gaps = 13/306 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HVPVLL++ I LN G + +D TFG GG+SR GS++ + D+D A Sbjct: 9 HVPVLLDESIEGLNLHRGGIYVDVTFGGGGHSREILSRLDGGSHLYSFDQDADAEQNTGR 68 Query: 77 --TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +F+ ++ F L++++ GVD G++ DLGVSS D RGFSF+ Sbjct: 69 MGLSGEQVSRFTFVRSNFRYLKNWMRYYGVDKIDGLLADLGVSSHHFDDETRGFSFRFEA 128 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ +G +A+D++N+ + L I + GE KQ+ RIA AIVK R PF+TT D Sbjct: 129 PLDMRMNKRAGQTAADILNEYDEGRLADIFYLYGELKQSRRIAAAIVKARGQQPFKTTHD 188 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L + + ++ + R FQALRI VN+E++ L + L +A + LK GG L V+++ Sbjct: 189 LLAAAEPFFPRAREKK--DLARMFQALRIEVNHEMDALREMLLAATELLKPGGRLSVITY 246 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDR+VK S + + + P F+ + KV+ T ++ N RSRSAK Sbjct: 247 HSLEDRMVKNIMKSGNIEGKVKQDFFGRIETP--FRLVNNKVITATDDEQERNPRSRSAK 304 Query: 311 LRAGMR 316 LR + Sbjct: 305 LRIAEK 310 >gi|241762288|ref|ZP_04760369.1| S-adenosyl-methyltransferase MraW [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241373191|gb|EER62821.1| S-adenosyl-methyltransferase MraW [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 332 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 143/331 (43%), Positives = 198/331 (59%), Gaps = 12/331 (3%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSNVIALDRD 67 M+S H+PVLL++VI L+P G + +D TFGAGGYSR+ K + VIA DRD Sbjct: 1 MTS--DSFSAPHIPVLLDEVIEALSPVEGGIYIDGTFGAGGYSRAILEKADTQVIAFDRD 58 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQL---QDYVPDKGVDGVVFDLGVSSMQIDCGDRG 124 P A+ G + YK + L FS + D + K VDG+VFD+GVSSMQID +RG Sbjct: 59 PDAIREGASLVEKYKGRLRLVNDCFSNIGHHLDALDIKAVDGMVFDIGVSSMQIDRPERG 118 Query: 125 FSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 FS Q GPLDMRM+ +G+SA + +N A KD+ +L + GEE+Q+ R+A AIV R P Sbjct: 119 FSIQADGPLDMRMAQTGLSAEEFLNNAQEKDIADVLYLYGEERQSRRVARAIVAAR---P 175 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 TT L+ +I++++ + ++ PA FQA+RI +N E++EL GL++AE+ LK+ G Sbjct: 176 LTTTFQLAKVIRQSLGYRPFDKKDPAAHCFQAIRIHLNRELDELKDGLQTAERFLKSKGC 235 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 L VV+FHSLEDR+VK F +G+ RH VF S + V + ++A N Sbjct: 236 LAVVTFHSLEDRIVKHFMREHAGQTGQVSRHQPVIPQQNPVFFSKPARPVRAGEAELARN 295 Query: 304 RRSRSAKLRAGMRTVERSIEDDSF--VHLPR 332 R+RSA LRA RT ED S H+PR Sbjct: 296 PRARSATLRAVYRTETPFSEDISRPDTHIPR 326 >gi|218296762|ref|ZP_03497468.1| S-adenosyl-methyltransferase MraW [Thermus aquaticus Y51MC23] gi|218242851|gb|EED09385.1| S-adenosyl-methyltransferase MraW [Thermus aquaticus Y51MC23] Length = 286 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 126/305 (41%), Positives = 186/305 (60%), Gaps = 26/305 (8%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCG 74 +H+PVL ++ + LL PG+V +DAT G G++R + G VIALD+DP AV Sbjct: 2 EATTEHIPVLYQEALDLLRVQPGQVYVDATLGGAGHTRGILERGGRVIALDQDPEAVERA 61 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSG 131 + ++A F L++ + + GV+ G++ DLGVSS ++ RGFS+Q+ G Sbjct: 62 KALSHP---NLLAYRANFRHLKEVLKEAGVEEVAGILADLGVSSFHLEDPRRGFSYQQEG 118 Query: 132 PLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 PLDMRM G +A +VVN ++DL RIL LGEE+QA RIA AIV+ R+ A +TT +L Sbjct: 119 PLDMRMGLEGPTAEEVVNTLPLEDLYRILRDLGEERQAYRIAKAIVEARRKARIRTTTEL 178 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++++ V F HPA ++FQALRI+VN+E+ L + LR AE+ L GG L+V++FH Sbjct: 179 AEIVRRAVGF--RAAGHPARKTFQALRIYVNDELNALEEFLRQAEEVLAPGGRLVVIAFH 236 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+VK+F + + +TKK + P+QE++A N R+RSAKL Sbjct: 237 SLEDRIVKRFLRE------------------SRLKVLTKKPLTPSQEEMAKNPRARSAKL 278 Query: 312 RAGMR 316 RA + Sbjct: 279 RAAEK 283 >gi|311748596|ref|ZP_07722381.1| S-adenosyl-methyltransferase MraW [Algoriphagus sp. PR1] gi|126577120|gb|EAZ81368.1| S-adenosyl-methyltransferase MraW [Algoriphagus sp. PR1] Length = 303 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 113/315 (35%), Positives = 171/315 (54%), Gaps = 20/315 (6%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDR 66 M+ +++ H+PV+L + L P + +D TFG GG+SR K ++ D+ Sbjct: 1 MTESVY-----HIPVMLPQCTEGLAIDPNGIYVDVTFGGGGHSREILKHLDKGHLYGFDQ 55 Query: 67 DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDR 123 D A++ E E F+ QA F L+ Y+ GV DG++ DLG+SS QID R Sbjct: 56 DEDAIANIPE-----SENFTFVQANFRDLKRYLRLHGVKKVDGILADLGISSHQIDEPSR 110 Query: 124 GFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GFS + SG LDMRM+ S +SA +V+N L ++ GI GE + A +A A+V R + Sbjct: 111 GFSTRFSGDLDMRMNQSAELSAKEVLNTYEAHQLHKVFGIYGEIRNAKTLAQAVVSERAA 170 Query: 183 APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 PF+TT+ ++ ++K K+ + FQALRI VN+E+ L + L + LK Sbjct: 171 QPFETTEGFTAFLKKYAPRGKD--FKYYAQVFQALRIEVNDEMGALEEMLLDSVDLLKPE 228 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G L+V+S+HSLEDRLVK + + + P + +T+K V+ +E+VA Sbjct: 229 GRLVVMSYHSLEDRLVKNLIQKGKFQGEVEKDFYGNMIRP--LEPVTRKAVIADEEEVAR 286 Query: 303 NRRSRSAKLRAGMRT 317 N R+RSAKLR +T Sbjct: 287 NPRARSAKLRVAKKT 301 >gi|289677689|ref|ZP_06498579.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv. syringae FF5] Length = 313 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 114/307 (37%), Positives = 174/307 (56%), Gaps = 12/307 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H+ VLLE+ + L LD TFG GG+SR ++ D+DP A++ GQ Sbjct: 7 HITVLLEEAVEALAVRADGCYLDGTFGRGGHSRLILSQLGPDGRLLGFDKDPQAIATGQA 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F + Q +F++L ++G V G++ DLGVSS Q+D +RGFSF GP Sbjct: 67 -LAAEDGRFVIVQRSFAELGSETQERGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDGP 125 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G+SA++ + A +++ R+ GEE+ A R+A+A+V RR+ PF+ T DL Sbjct: 126 LDMRMDPARGVSAAEFIATAPAEEIARVFKEYGEERFAKRMANAVVARREVQPFERTADL 185 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +++ + + +PATR+FQ LRI VNNE+ +L GL +A AL+ GG L+V+SFH Sbjct: 186 AEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLVVISFH 244 Query: 252 SLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK F + G+ + +P P + I K + + N RSRSA Sbjct: 245 SLEDRIVKLFMRKLAKGEADNMPRNLPIQYKPFEPKIKIHGKAQFASDVETKANPRSRSA 304 Query: 310 KLRAGMR 316 +R + Sbjct: 305 VMRVAEK 311 >gi|310814902|ref|YP_003962866.1| S-adenosyl-methyltransferase MraW [Ketogulonicigenium vulgare Y25] gi|308753637|gb|ADO41566.1| S-adenosyl-methyltransferase MraW [Ketogulonicigenium vulgare Y25] Length = 328 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 139/327 (42%), Positives = 191/327 (58%), Gaps = 8/327 (2%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQE 76 HV VL++ ++ + P V +D TFGAGGY+R G++ VI +DRDP + Sbjct: 5 APHVSVLIKPLVRAVAPVQ-GVWVDGTFGAGGYTRDLLAAGADKVIGIDRDPSVFPLSAD 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 ++ L TFS++ + V + VDGVV DLGVSSMQID +RGFSFQK GPLDMR Sbjct: 64 WRAAMPDRVDLRLGTFSEMDEIVGEM-VDGVVLDLGVSSMQIDQAERGFSFQKEGPLDMR 122 Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 M SG +A+D+ N ++L IL + GEE+ + RIA AIV+ R P T +L+ ++ Sbjct: 123 MGDSGPTAADLCNTLPEEELANILYLFGEERASRRIARAIVQAR---PITRTLELAEIVS 179 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 + K + HPATRSFQALRI VN+E +L GL +AE+ LK GG L VV+FHS+EDR Sbjct: 180 SCLPRQKPGQSHPATRSFQALRIAVNDEYRQLYDGLAAAERILKPGGYLAVVTFHSVEDR 239 Query: 257 LVKKFFASRSGKVMAVRHMIPS-NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 +VK+F R+G V P + P F +T+K + P ++VA N RSRSA LR Sbjct: 240 MVKRFMQLRAGAVGGGSRYAPEVQSAPPAFTLVTRKAIQPDDDEVAANPRSRSALLRVAK 299 Query: 316 RTVERS-IEDDSFVHLPRLPTLSQFRG 341 RT + + D + +P L G Sbjct: 300 RTDAPAEMLDPGEIGMPTLEPAKPRGG 326 >gi|157963630|ref|YP_001503664.1| S-adenosyl-methyltransferase MraW [Shewanella pealeana ATCC 700345] gi|262826529|sp|A8H992|RSMH_SHEPA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|157848630|gb|ABV89129.1| S-adenosyl-methyltransferase MraW [Shewanella pealeana ATCC 700345] Length = 315 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 122/308 (39%), Positives = 176/308 (57%), Gaps = 13/308 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 +H+ VLL + +A LN P + +D TFG GG+SR + +IA+DRDP A++ Sbjct: 6 EHLSVLLAETVAGLNIRPDGIYIDGTFGRGGHSRKVLEELGPNGRLIAIDRDPQAIAAA- 64 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E +D +F + F QL DYV D G +DGV+ D GVSS Q+D +RGFSF + G Sbjct: 65 EQFKD-DSRFQIVHGGFGQLADYVEDLGLKGQIDGVLLDFGVSSPQLDDAERGFSFLRDG 123 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S G +A+ + +A ++D+ + GEEK + IA I R+ APF T+D Sbjct: 124 PLDMRMDNSQGETAAQWLARAEIEDMAWVFKTYGEEKNSRHIARCIAADREKAPFLRTKD 183 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ LI + + N+ HPATR FQA+RI++N+E+E++ Q L A L G L V+SF Sbjct: 184 LADLIARITKNKERNK-HPATRVFQAIRIYINSELEQIDQALEGALAVLAPEGRLSVISF 242 Query: 251 HSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 HSLEDR+VK+F S V + + + + K + P+ E+V N R+RS Sbjct: 243 HSLEDRMVKRFIRRNSQGESVPHGLPITEAEINKSRKLKAMGKAIKPSVEEVERNARARS 302 Query: 309 AKLRAGMR 316 + LR R Sbjct: 303 SVLRIAER 310 >gi|240126238|ref|ZP_04739124.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae SK-92-679] gi|254494330|ref|ZP_05107501.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae 1291] gi|268595426|ref|ZP_06129593.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae 35/02] gi|268597236|ref|ZP_06131403.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae FA19] gi|268599411|ref|ZP_06133578.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae MS11] gi|268682771|ref|ZP_06149633.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae PID332] gi|268684819|ref|ZP_06151681.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae SK-92-679] gi|291043143|ref|ZP_06568866.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae DGI2] gi|262831552|sp|B4RQD7|RSMH_NEIG2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|226513370|gb|EEH62715.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae 1291] gi|268548815|gb|EEZ44233.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae 35/02] gi|268551024|gb|EEZ46043.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae FA19] gi|268583542|gb|EEZ48218.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae MS11] gi|268623055|gb|EEZ55455.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae PID332] gi|268625103|gb|EEZ57503.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae SK-92-679] gi|291012749|gb|EFE04732.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae DGI2] Length = 318 Score = 356 bits (915), Expect = 2e-96, Method: Composition-based stats. Identities = 116/323 (35%), Positives = 172/323 (53%), Gaps = 13/323 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 MS A + H+ VLL + + L V +D TFG GG+SR +I D Sbjct: 1 MSGAESY---RHITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFD 57 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGD 122 +DP A++ +E + ++ + F+ Q + G VDG +FDLG+SS QID G Sbjct: 58 KDPQAIAVAEE-LARSDKRVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGS 116 Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF+ PLDMRM + G+SA++ + A+ +DL ++ GEE+ + +I AIV +R Sbjct: 117 RGFSFRFDAPLDMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIVRAIVAQRA 176 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 +P TT+ L+ ++ + V + + PATR+FQA+RIF+N E+EE+ L LK Sbjct: 177 ESPIDTTRKLAQIVAQNVRTRERGQ-DPATRTFQAIRIFINRELEEVGAVLPQVMCRLKE 235 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDV 300 GG L V++FHSLEDR+VK+F S A P I + + P + ++ Sbjct: 236 GGRLAVIAFHSLEDRIVKQFVKKYSQHEPLPSWAAVREADLPEPPLKIVGRALKPGEAEI 295 Query: 301 AFNRRSRSAKLRAGMRTVERSIE 323 A N R+RSA LR RT E Sbjct: 296 AANPRARSAVLRVAERTAGPIPE 318 >gi|89067948|ref|ZP_01155392.1| S-adenosyl-methyltransferase MraW [Oceanicola granulosus HTCC2516] gi|89046546|gb|EAR52602.1| S-adenosyl-methyltransferase MraW [Oceanicola granulosus HTCC2516] Length = 320 Score = 356 bits (915), Expect = 2e-96, Method: Composition-based stats. Identities = 143/326 (43%), Positives = 198/326 (60%), Gaps = 16/326 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRD 67 MS+A H PVL+E +I P LD TFG GGY+R+ + G+ +VI +DRD Sbjct: 1 MSAA-----APHTPVLIEPIIEACAPVS-GTWLDGTFGFGGYARALLEAGAAHVIGIDRD 54 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 P A + + +L + TFS+L + + +DGVV DLGVSSMQ+D +RGFSF Sbjct: 55 PLAHELAGWVADE--PRVTLIRGTFSELDRH--GEALDGVVLDLGVSSMQLDRPERGFSF 110 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 GPLDMRMS G SA+D+VN+ + + + IL GEE+ + RIA AIV+ R P T Sbjct: 111 MSDGPLDMRMSQDGPSAADLVNELDERTIADILFNYGEERASRRIARAIVRAR---PLAT 167 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T +L++L++ + K + HPATR+FQALRI VNNE ELA+GL +AE+AL GGLL V Sbjct: 168 TAELAALVEGCLPRPKPGQSHPATRTFQALRIAVNNEYGELAEGLMAAERALAPGGLLAV 227 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRS 306 V+FHS+EDR+VK+F +R+G+ P A P F +T+K + + +VA N R+ Sbjct: 228 VTFHSVEDRMVKRFMQARAGQTGGPSRHAPDVAQAPPAFGLVTRKAIGADEAEVARNPRA 287 Query: 307 RSAKLRAGMRTVERSIE-DDSFVHLP 331 RSAKLR RT + D + +P Sbjct: 288 RSAKLRIARRTDAPAAPVDIKSLGMP 313 >gi|262831577|sp|A4VIH0|RSMH_PSEU5 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 315 Score = 356 bits (915), Expect = 2e-96, Method: Composition-based stats. Identities = 118/310 (38%), Positives = 176/310 (56%), Gaps = 14/310 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H+ VLL++ +A LN LD TFG GG+SR + ++ D+DP A++ GQ Sbjct: 9 HITVLLDEAVAALNVRADGRYLDGTFGRGGHSRLLLQQLGPNGQLLGFDKDPLAIATGQA 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F + Q +F++L D V +G V G++ DLGVSS Q+D RGFSF GP Sbjct: 69 -LAAEDGRFVVVQRSFAELGDEVAQRGWTGAVSGILLDLGVSSPQLDDPIRGFSFLNDGP 127 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G+SA++ + A+ ++ R+ GEE+ A R+A A+V+RR APF+ T DL Sbjct: 128 LDMRMDPSRGVSAAEWIASADEDEIARVFKDYGEERFAKRMARAVVQRRAEAPFERTADL 187 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ + + PATR+FQ LRI +NNE+ +L +GL +A AL+ GG L+V+SFH Sbjct: 188 AKVLTDANPAWEKGK-SPATRAFQGLRIHINNELGDLERGLDAALDALEVGGRLVVISFH 246 Query: 252 SLEDRLVKKFFASRSG---KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SLEDR+VK+F + + I A + I K ++ +V N RSRS Sbjct: 247 SLEDRIVKQFMRRHAKGEADKLPRDLPIIPKAFEPRLKLI-GKPQYASEAEVKANPRSRS 305 Query: 309 AKLRAGMRTV 318 A +R + Sbjct: 306 AVMRVAEKVR 315 >gi|313891489|ref|ZP_07825102.1| S-adenosyl-methyltransferase MraW [Dialister microaerophilus UPII 345-E] gi|313120066|gb|EFR43245.1| S-adenosyl-methyltransferase MraW [Dialister microaerophilus UPII 345-E] Length = 310 Score = 356 bits (915), Expect = 2e-96, Method: Composition-based stats. Identities = 101/308 (32%), Positives = 169/308 (54%), Gaps = 10/308 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 HV VL ++I+ + V D T G G+ + G+ +I +D+D A+ + Sbjct: 4 KHVTVLRREMISAVLTDKNGVYADCTLGGAGHLSLLSEKVENGALLIGIDQDLDALKAAE 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 M+D + + FS +++ + +K ++G +FDLGVSS Q+D +RGFS+ G Sbjct: 64 LRMKDCTCNLNFVHSNFSNIKNILSEKNLNKINGFIFDLGVSSYQLDEANRGFSYMHEGR 123 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ S ++A DVVN+ + + + I+ GEE+ A RIA IV R++ +TT +L Sbjct: 124 LDMRMNQNSELTAHDVVNKYSEEKIAFIIKEYGEERWAKRIAEFIVDYRKNKIIETTGEL 183 Query: 192 SSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 S+I+ + ++ N HPA R+FQA+RI VNNE+ + + L +GG + +++F Sbjct: 184 VSIIKAAIPLGARKNGPHPAKRTFQAIRIEVNNELGIIESTINDCVDCLVSGGRIGIITF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK+ F + + + + + H + + + PT E++A N R+RSA Sbjct: 244 HSLEDRIVKRTFKNLAKQCICPPEFPLCVCNHQRKIKLLGNG-IRPTDEEIAENPRARSA 302 Query: 310 KLRAGMRT 317 LR + Sbjct: 303 ILRVAEKI 310 >gi|293392868|ref|ZP_06637186.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Serratia odorifera DSM 4582] gi|291424727|gb|EFE97938.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Serratia odorifera DSM 4582] Length = 313 Score = 356 bits (915), Expect = 2e-96, Method: Composition-based stats. Identities = 117/311 (37%), Positives = 179/311 (57%), Gaps = 19/311 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H VLL++ + LN + +D TFG GG+SR ++A+DRDP A++ + Sbjct: 6 KHTTVLLDEAVNGLNIRSNGIYIDGTFGRGGHSRLILSQLGPEGRLLAIDRDPQAIAAAK 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +F++ FS L YV ++ +DGV+ DLGVSS Q+D +RGFSF + G Sbjct: 66 SI---EDPRFTIVHGPFSDLSHYVRERELVGKIDGVLLDLGVSSPQLDDAERGFSFMRDG 122 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + G SA++ + +A D+ +L GEE+ A RIA AIV+R ++ P T++ Sbjct: 123 PLDMRMDPTRGQSAAEWLLKAEADDIAWVLKTFGEERFAKRIARAIVERNKTEPMTRTKE 182 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ LI F + ++ HPATRSFQA+RI++N+E+EE+ + L A + L G L ++SF Sbjct: 183 LADLIADASPFREKHK-HPATRSFQAIRIYINSELEEIERALDGALEVLAPQGRLSIISF 241 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305 HSLEDR+VK+F S + + A +S+ K ++P++ +VA N R Sbjct: 242 HSLEDRIVKRFMRHHSRGAQVPAGLPLTEAQLRELGGRNLKSLGK--MMPSEAEVAENPR 299 Query: 306 SRSAKLRAGMR 316 +RS+ LR R Sbjct: 300 ARSSVLRIAER 310 >gi|328950951|ref|YP_004368286.1| Ribosomal RNA small subunit methyltransferase H [Marinithermus hydrothermalis DSM 14884] gi|328451275|gb|AEB12176.1| Ribosomal RNA small subunit methyltransferase H [Marinithermus hydrothermalis DSM 14884] Length = 281 Score = 356 bits (915), Expect = 2e-96, Method: Composition-based stats. Identities = 123/302 (40%), Positives = 175/302 (57%), Gaps = 27/302 (8%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQE-TM 78 HVPVL + + LL G + +DAT G G++R + G VI D+DP A++ + + Sbjct: 3 HVPVLYHETLELLAVQRGGLYVDATLGGAGHTRGILERGGQVIGFDQDPEAIARVRALRL 62 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + +L + F L+ ++ + GV DGV+ DLGVSS D +RGFS++ GPLDM Sbjct: 63 ----DGLTLVEGNFRHLEAHLNELGVAEVDGVLADLGVSSYHFDNPERGFSYRHEGPLDM 118 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RMS G +A+DVVN V++L RIL GEE +A RIA I + R+ P +TT L+ ++ Sbjct: 119 RMSGEGPTAADVVNTYPVEELARILRTFGEEPRAWRIARRIAEVREQQPIRTTTQLAEVV 178 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 ++ V HPA ++FQALRI+VN+E+ L L +A + LK GG L V+SFHSLED Sbjct: 179 RQAV--GWRGAGHPARKTFQALRIYVNDELGALEAFLEAAARVLKPGGRLAVISFHSLED 236 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 R+VK+F A FQ +TKK + P+ + A N R+RSAKLR G+ Sbjct: 237 RIVKRFLKED-----------------ARFQVLTKKPITPSDAERATNPRARSAKLRGGV 279 Query: 316 RT 317 R Sbjct: 280 RV 281 >gi|241205565|ref|YP_002976661.1| S-adenosyl-methyltransferase MraW [Rhizobium leguminosarum bv. trifolii WSM1325] gi|262825385|sp|C6ARU7|RSMH_RHILS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|240859455|gb|ACS57122.1| S-adenosyl-methyltransferase MraW [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 341 Score = 356 bits (915), Expect = 2e-96, Method: Composition-based stats. Identities = 170/309 (55%), Positives = 214/309 (69%), Gaps = 1/309 (0%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFS 93 PAPGK+ILD TFGAGGYS + G+ VIALDRDP A++ GQ + + +F L + FS Sbjct: 33 PAPGKLILDGTFGAGGYSSAILAAGAEVIALDRDPTAIAAGQAMVAAHGGRFKLVHSQFS 92 Query: 94 QLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANV 153 L D+ P G+DGVV D+GVSSMQID +RGFSFQK+GPLDMRMS G+SA+DVVN+A V Sbjct: 93 HLADHAPQGGLDGVVLDIGVSSMQIDEAERGFSFQKNGPLDMRMSAEGVSAADVVNRAKV 152 Query: 154 KDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRS 213 DL RI LGEE QA RIAHAI KRR PF+TT+DL+ LI+ ++IHPATR Sbjct: 153 ADLIRIFHFLGEESQAPRIAHAIEKRRAEKPFETTRDLAGLIELVTPRKMKDKIHPATRV 212 Query: 214 FQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVR 273 FQALRIFVN+E+ ELAQ L +AE ALK GG L+ V+FHSLEDR+VKKFF+ R+GK R Sbjct: 213 FQALRIFVNDELGELAQALFAAEAALKPGGRLVAVTFHSLEDRIVKKFFSDRAGKASGSR 272 Query: 274 HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERS-IEDDSFVHLPR 332 H+ ++ A F +I K +V ++ + N R+RSAKLRAG+RT + D S P Sbjct: 273 HLPVAHERAATFAAIGKPMVSASEAEAEINPRARSAKLRAGLRTEAAAEAADMSLFGFPN 332 Query: 333 LPTLSQFRG 341 L +L + G Sbjct: 333 LASLGKLGG 341 >gi|329295550|ref|ZP_08252886.1| 16S rRNA m(4)C1402 methyltranserfase [Plautia stali symbiont] Length = 313 Score = 356 bits (915), Expect = 2e-96, Method: Composition-based stats. Identities = 119/315 (37%), Positives = 173/315 (54%), Gaps = 15/315 (4%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAV 71 H VLL++ + LN + +D TFG GG+SR ++A+DRDP A+ Sbjct: 2 QENFKHTTVLLDEAVNGLNIREDGIYIDGTFGRGGHSRLILSQLGAHGQLLAIDRDPQAI 61 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSF 127 + E +FS+ FS L +YV ++G +DGV+ DLGVSS Q+D +RGFSF Sbjct: 62 AAAAEI---KDPRFSIVHGPFSALAEYVEERGLTGKIDGVLLDLGVSSPQLDDAERGFSF 118 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + GPLDMRM G SA++ + A D+ +L GEE+ A RIA AIV+R + P Sbjct: 119 MRDGPLDMRMDPRRGQSAAEWLQSAEEADIAFVLKTYGEERFAKRIARAIVERNREQPMT 178 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T++L+ LI K+ HPATRSFQA+RI++N+E+EE+ L+ A L GG L Sbjct: 179 RTKELADLIAAATPV-KDKFKHPATRSFQAIRIWLNSELEEIDIALKGALTVLAPGGRLS 237 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFN 303 ++SFHSLEDRLVK+F +S + + + + T ++ + +V N Sbjct: 238 IISFHSLEDRLVKRFMRDQSRGPQVPAGIPMTESQLKALGGRELKTLGKLILGEAEVKDN 297 Query: 304 RRSRSAKLRAGMRTV 318 R+RS+ LR RT Sbjct: 298 PRARSSVLRIAERTA 312 >gi|58583456|ref|YP_202472.1| S-adenosyl-methyltransferase MraW [Xanthomonas oryzae pv. oryzae KACC10331] gi|58428050|gb|AAW77087.1| cell division protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 353 Score = 356 bits (915), Expect = 2e-96, Method: Composition-based stats. Identities = 117/309 (37%), Positives = 174/309 (56%), Gaps = 7/309 (2%) Query: 12 AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDP 68 + HVPVL +V+ L LD TFG GG++R + G ++ +D+DP Sbjct: 16 PVSQPPAAHVPVLYTQVLDGLQVTENGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDP 75 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 A++ ++T + S+ + +F+ L V VDG++ DLGVSS Q++ RGFSF Sbjct: 76 EAIAVAEQTFGG-DARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLEVAGRGFSFG 134 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 K GPLDMRM SG SA+ + QA +++ +L GEE+Q+ RIA AIV RR P Sbjct: 135 KDGPLDMRMDPDSGQSAAQWLAQATDREIADVLWTYGEERQSRRIARAIVARRAEQPLLR 194 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T L+ LI + +++ HPATRSFQA+RI++N E+++L GL +A ALK GG L V Sbjct: 195 TAQLADLIASVMPRG-DSKTHPATRSFQAIRIYINRELDDLETGLDAALAALKPGGRLAV 253 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +SFHSLEDR+VK+F A + + R + + Q ++ + ++ N R+R Sbjct: 254 ISFHSLEDRIVKQFMARYAKAPPSNRRLPEAQPFVPTLQLVS-GAIKADDAELNVNPRAR 312 Query: 308 SAKLRAGMR 316 SA LR + Sbjct: 313 SAVLRVAEK 321 >gi|83589686|ref|YP_429695.1| methyltransferase [Moorella thermoacetica ATCC 39073] gi|123524773|sp|Q2RK87|RSMH_MOOTA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|83572600|gb|ABC19152.1| methyltransferase [Moorella thermoacetica ATCC 39073] Length = 318 Score = 356 bits (915), Expect = 2e-96, Method: Composition-based stats. Identities = 118/308 (38%), Positives = 170/308 (55%), Gaps = 9/308 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET-- 77 H PVLL +V+ LL+P PG+ +DAT G GG+SR+ L Sbjct: 5 HQPVLLTEVLHLLDPQPGEFFVDATVGGGGHSRAILPRLLPGGHLLGLDRDAEAVAAARE 64 Query: 78 -MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + + QA F L + GVDG++FDLGVSS Q+D +RGFS+Q PL Sbjct: 65 RLAAFGANVEIVQANFRDLAAILEARGIPGVDGLLFDLGVSSYQLDNPERGFSYQVDAPL 124 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM ++A++VVN + LTR++ GEE+ A RIA IV R+ P TT L Sbjct: 125 DMRMGQDQELTAAEVVNNWPEEKLTRVIWQYGEERWAPRIAAFIVASRRQRPITTTGQLV 184 Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++I++ + ++ + HPA R+FQALRI +N E++ L L + LK GG + V+SFH Sbjct: 185 AIIKEAIPAGARRSGHHPAKRTFQALRIAINGELDALRAALEQLDSILKPGGRVGVISFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK+ F S SG+ + + V +T+K V+PT ++ N R+RSAK Sbjct: 245 SLEDRIVKEAFRSLSGRCTCPPGLPVCTCGRREVLVPVTRKPVIPTAAEIVANPRARSAK 304 Query: 311 LRAGMRTV 318 LR R + Sbjct: 305 LRVARRVL 312 >gi|327479635|gb|AEA82945.1| S-adenosyl-methyltransferase MraW [Pseudomonas stutzeri DSM 4166] Length = 315 Score = 356 bits (915), Expect = 2e-96, Method: Composition-based stats. Identities = 118/310 (38%), Positives = 177/310 (57%), Gaps = 14/310 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H+ VLL++ +A L+ LD TFG GG+SR + ++ D+DP A++ GQ Sbjct: 9 HITVLLDEAVAALSVRADGRYLDGTFGRGGHSRLLLQQLGPNGQLLGFDKDPLAIATGQA 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F + Q +F++L D V +G V G++ DLGVSS Q+D RGFSF GP Sbjct: 69 -LAAEDGRFVVVQRSFAELGDEVAQRGWMGAVSGILLDLGVSSPQLDDPIRGFSFLNDGP 127 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G+SAS+ + A+ ++ R+ GEE+ A R+A A+V+RR APF+ T DL Sbjct: 128 LDMRMDPSRGVSASEWIASADEDEIARVFKDYGEERFAKRMARAVVQRRAEAPFERTADL 187 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ + + +PATR+FQ LRI +NNE+ +L GL +A +AL+ GG L+V+SFH Sbjct: 188 AKVLTDANPAWEKGK-NPATRAFQGLRIHINNELGDLECGLDAALEALEVGGRLVVISFH 246 Query: 252 SLEDRLVKKFFASRSG---KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SLEDR+VK+F + + I A + I K ++ +V N RSRS Sbjct: 247 SLEDRIVKQFMRRHAKGEADKLPRDLPIIPKAFEPRLKLI-GKPQYASEAEVKANPRSRS 305 Query: 309 AKLRAGMRTV 318 A +R + Sbjct: 306 AVMRVAEKVR 315 >gi|59801880|ref|YP_208592.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae FA 1090] gi|268601983|ref|ZP_06136150.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae PID18] gi|268604315|ref|ZP_06138482.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae PID1] gi|268687198|ref|ZP_06154060.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae SK-93-1035] gi|293398479|ref|ZP_06642657.1| methylase MraW [Neisseria gonorrhoeae F62] gi|68565408|sp|Q5F6K7|RSMH_NEIG1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|59718775|gb|AAW90180.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090] gi|268586114|gb|EEZ50790.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae PID18] gi|268588446|gb|EEZ53122.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae PID1] gi|268627482|gb|EEZ59882.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae SK-93-1035] gi|291610950|gb|EFF40047.1| methylase MraW [Neisseria gonorrhoeae F62] Length = 318 Score = 356 bits (915), Expect = 3e-96, Method: Composition-based stats. Identities = 116/323 (35%), Positives = 172/323 (53%), Gaps = 13/323 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 MS A + H+ VLL + + L V +D TFG GG+SR +I D Sbjct: 1 MSGAESY---RHITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFD 57 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGD 122 +DP A++ +E + ++ + F+ Q + G VDG +FDLG+SS QID G Sbjct: 58 KDPQAIAVAEE-LARSDKRVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGS 116 Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF+ PLDMRM + G+SA++ + A+ +DL ++ GEE+ + +I AIV +R Sbjct: 117 RGFSFRFDAPLDMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIVRAIVAQRA 176 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 +P TT+ L+ ++ + V + + PATR+FQA+RIF+N E+EE+ L LK Sbjct: 177 ESPIDTTRKLAQIVAQNVRTRERGQ-DPATRTFQAIRIFINRELEEVGAVLPQVMCRLKE 235 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDV 300 GG L V++FHSLEDR+VK+F S A P I + + P + ++ Sbjct: 236 GGRLAVIAFHSLEDRIVKQFVKKYSQHEPLPSWAAVREADLPDPPLKIVGRALKPGEAEI 295 Query: 301 AFNRRSRSAKLRAGMRTVERSIE 323 A N R+RSA LR RT E Sbjct: 296 AANPRARSAVLRVAERTAGPIPE 318 >gi|71909118|ref|YP_286705.1| methyltransferase [Dechloromonas aromatica RCB] gi|88909196|sp|Q47A96|RSMH_DECAR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|71848739|gb|AAZ48235.1| methyltransferase [Dechloromonas aromatica RCB] Length = 308 Score = 356 bits (915), Expect = 3e-96, Method: Composition-based stats. Identities = 117/305 (38%), Positives = 175/305 (57%), Gaps = 12/305 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPFAVSCGQE 76 HV VLLE+ + L V +DATFG GG+SR ++A+DRDP A++ G E Sbjct: 7 HVTVLLEEAVGALAIKADGVYVDATFGRGGHSRRILSELNQNGRLVAVDRDPQAIAAGAE 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +F L F +L + + G VDGV+FD+GVSS QID G+RGFSF+ PL Sbjct: 67 I---DDSRFLLVHRAFGELAEAADEAGIRDVDGVLFDVGVSSPQIDDGERGFSFRYDAPL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + G +A++ + +A ++D+T ++ GEE+ A +IA +V R P TT + Sbjct: 124 DMRMDTTQGETAAEWLARAEIRDITEVIRNYGEERFAFQIAKKVVAARLEQPIVTTGQFA 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +L+++TV + + PATRSFQALRI +N E+ +L L A + LK GG L+V+SFHS Sbjct: 184 ALVRETVRTREPGQ-DPATRSFQALRIHINQELRQLEVALPQALELLKPGGRLVVISFHS 242 Query: 253 LEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK F +S M + ++ P + + + P+ ++ N R+RSA + Sbjct: 243 LEDRIVKNFMRDQSIADAMPKSLPLRADQLPKPKLRLVGRPIKPSAAEIDANPRARSAVM 302 Query: 312 RAGMR 316 R + Sbjct: 303 RIAEK 307 >gi|90020487|ref|YP_526314.1| S-adenosyl-methyltransferase MraW [Saccharophagus degradans 2-40] gi|123277667|sp|Q21MH7|RSMH_SACD2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|89950087|gb|ABD80102.1| S-adenosyl-methyltransferase MraW [Saccharophagus degradans 2-40] Length = 312 Score = 356 bits (914), Expect = 3e-96, Method: Composition-based stats. Identities = 110/308 (35%), Positives = 168/308 (54%), Gaps = 12/308 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H VLL++ + L P +D TFG GG+SR+ + +D+DP AV+ G Sbjct: 5 PHFSVLLQESVESLVVDPAGTYVDGTFGRGGHSRAILAKLGPEGKLFGIDKDPEAVAVG- 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDY------VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 + + +F + +F+ L+ G+ GV+ DLGVSS Q+D +RGFSF Sbjct: 64 KALEAEDSRFRIVHGSFADLKHIDLLQADFAAGGLSGVLVDLGVSSPQLDVAERGFSFMN 123 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM+ G++A++ +N A +D+ ++L GEE+ + +A AIV+RR+ PF T Sbjct: 124 DGPLDMRMNTEAGMTAAEWINTAKQEDIAQVLWEYGEERFSRHMAKAIVERREIKPFTRT 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 D + +++ HPATR+FQA+RIF+N E+E+L Q L + L GG +V+ Sbjct: 184 HDFAEVVKAA-NRKWEKGKHPATRAFQAVRIFINRELEDLRQLLDDSVSVLAPGGRFVVI 242 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDR+VK+FF +S + + + I K + ++ N RSRS Sbjct: 243 SFHSLEDRMVKRFFRDQSMGKQFPKGLPVTEEMKKQNLKIIGKALKAGDTELTQNIRSRS 302 Query: 309 AKLRAGMR 316 A +R G R Sbjct: 303 AVMRVGER 310 >gi|297539600|ref|YP_003675369.1| S-adenosyl-methyltransferase MraW [Methylotenera sp. 301] gi|297258947|gb|ADI30792.1| S-adenosyl-methyltransferase MraW [Methylotenera sp. 301] Length = 316 Score = 356 bits (914), Expect = 3e-96, Method: Composition-based stats. Identities = 113/316 (35%), Positives = 165/316 (52%), Gaps = 13/316 (4%) Query: 11 SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRD 67 S + H+ VLLE+ + L V +D TFG GG+SR + +IA DRD Sbjct: 2 SELSLNTNSHITVLLEEAVQALAIKADGVYVDGTFGRGGHSRKILEKLGSSGRLIAFDRD 61 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRG 124 A+ +E +FS+ + F+ +Q + + GV DG++ DLG+SS QID RG Sbjct: 62 LKAIESSKEI---TDPRFSMVHSHFAGMQAELSEMGVSKVDGILLDLGISSPQIDDASRG 118 Query: 125 FSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 FSF+ PLDMRM S G +A+D + + L ++ GEE+ A +IA AI+ R Sbjct: 119 FSFRYDAPLDMRMDQSSGQTAADFLANTTEQHLGEVIKNYGEERFAKQIARAIITERNDG 178 Query: 184 P-FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 TT L+ ++ V + + +PATR+FQALRI+VN E+EEL+ + L Sbjct: 179 RAITTTGQLAKVVAGAVTRFEPGQ-NPATRTFQALRIYVNQELEELSLTMPQCLALLAPQ 237 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 G L V+SFHSLEDR+VK+F + + + + P K + P+ ++V Sbjct: 238 GRLAVISFHSLEDRIVKQFIRDQENRDDLPANFPVRAADLPQPKLKGVGKTIKPSTKEVK 297 Query: 302 FNRRSRSAKLRAGMRT 317 N RSRSA LR RT Sbjct: 298 ANPRSRSAVLRVAERT 313 >gi|116670123|ref|YP_831056.1| S-adenosyl-methyltransferase MraW [Arthrobacter sp. FB24] gi|263447796|sp|A0JV86|RSMH_ARTS2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|116610232|gb|ABK02956.1| S-adenosyl-methyltransferase MraW [Arthrobacter sp. FB24] Length = 332 Score = 356 bits (914), Expect = 3e-96, Method: Composition-based stats. Identities = 126/324 (38%), Positives = 188/324 (58%), Gaps = 15/324 (4%) Query: 15 HTIGDHVPVLLEKVIALLNP------APGK--VILDATFGAGGYSRSFCKMGS--NVIAL 64 T HVPVL ++ I LL P G+ V++DAT G GG+S + + ++I + Sbjct: 9 PTSERHVPVLKDRCINLLAPGIEAARQRGETPVVIDATLGMGGHSEALLQRFPDLHLIGI 68 Query: 65 DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCG 121 DRD A++ E ++ + ++ L A + ++ D + D GV GV+ DLGVSS+Q+D Sbjct: 69 DRDEEALALAGERLKPFADRTDLVHAVYDEIPDVLRDLGVSEVHGVLMDLGVSSLQLDER 128 Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGF++ PLDMRM S G +A+DVVN + +DL RI+ GEEK A RIA+ IV R Sbjct: 129 ERGFAYSFDAPLDMRMDTSRGQTAADVVNNYSEEDLVRIIRKWGEEKFAGRIANRIVAAR 188 Query: 181 QSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 ++ PF TT +L I+ V + HPA R+FQALRI VN E++ L + + +A AL Sbjct: 189 EAKPFATTGELVDTIRAVVPAGAAKTGGHPAKRTFQALRIEVNEELDVLERAVPAAVDAL 248 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 GG ++V+S+HSLED++VKK F + S + + H +++TK VPT ++ Sbjct: 249 AMGGRVVVMSYHSLEDKIVKKVFQTGSKSSAPLGFPVELEEHKPELKTLTKGTEVPTADE 308 Query: 300 VAFNRRSRSAKLRAGMRTVERSIE 323 +A N R+ SA+LRA R R Sbjct: 309 IAENPRAASARLRAVERIRARRAA 332 >gi|148549600|ref|YP_001269702.1| S-adenosyl-methyltransferase MraW [Pseudomonas putida F1] gi|262825108|sp|A5W8Q8|RSMH_PSEP1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|148513658|gb|ABQ80518.1| S-adenosyl-methyltransferase MraW [Pseudomonas putida F1] Length = 315 Score = 356 bits (914), Expect = 3e-96, Method: Composition-based stats. Identities = 115/308 (37%), Positives = 174/308 (56%), Gaps = 12/308 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 +H+ VLL++ + L LD TFG GG+SR ++ D+DP A++ GQ Sbjct: 8 NHITVLLDEAVEALALRADGCYLDGTFGRGGHSRLILSKLGPQGRLLGFDKDPQAIATGQ 67 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +F + Q +F++L V +G V GV+ DLGVSS Q+D +RGFSF G Sbjct: 68 A-LAAEDGRFVIVQRSFAELGAEVAARGLHGKVSGVLLDLGVSSPQLDDPERGFSFLNDG 126 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ GISA++ + A V+++ R+ GEE+ A R+A A+V+RR+ PF T D Sbjct: 127 PLDMRMNPDQGISAAEFIATAPVEEIARVFKEYGEERFAGRMARAVVERREKQPFTRTAD 186 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ +++ + + +PATR+FQ LRI VNNE+ +L GL +A AL+ GG L V+SF Sbjct: 187 LAEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLAVISF 245 Query: 251 HSLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFNRRSRS 308 HSLEDR+VK F G+ + +P + + K ++ ++ N RSRS Sbjct: 246 HSLEDRIVKLFMRKLVKGEADNLPRNLPVQHKVFEPKIKLIGKAQFASEAELKANPRSRS 305 Query: 309 AKLRAGMR 316 A +R + Sbjct: 306 AVMRVAEK 313 >gi|254470515|ref|ZP_05083919.1| S-adenosyl-methyltransferase MraW [Pseudovibrio sp. JE062] gi|211960826|gb|EEA96022.1| S-adenosyl-methyltransferase MraW [Pseudovibrio sp. JE062] Length = 346 Score = 356 bits (914), Expect = 3e-96, Method: Composition-based stats. Identities = 157/329 (47%), Positives = 212/329 (64%), Gaps = 7/329 (2%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77 H+PVLL++V + PAPG VI+D TFGAGGYS +F + G++VI +DRDP A+ G+ Sbjct: 17 ARHIPVLLDRVREAMAPAPGDVIVDGTFGAGGYSSAFLEAGASVIGIDRDPDAIRDGRAL 76 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + + L F L+++ G VDGVV DLGVSSMQ+D RGFSF+ GPLD Sbjct: 77 EQASDGRLKLVHGQFVDLEEHARALGHDAVDGVVMDLGVSSMQLDQAARGFSFRFDGPLD 136 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRM G SA+DVVN KDLTRI+G+LGEEK+AS ++HAI + R+ PF+TT +L+ + Sbjct: 137 MRMEQDGPSAADVVNTMERKDLTRIIGLLGEEKRASSVSHAICQAREEKPFETTLELARV 196 Query: 195 IQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 I+K V K IHPATR+FQALRI+VN E+ + A L +AE+ L+ GG L+VV+FHSL Sbjct: 197 IEKVVKRNPKKASIHPATRTFQALRIYVNGELHQAAGALAAAERILRPGGRLVVVTFHSL 256 Query: 254 EDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 EDR+VK+F A R + RHM + P F+ I K + E+V+ N R+RSA+LR Sbjct: 257 EDRIVKRFLADRCKTRGGGSRHMPEVDIPPPTFEFIVKGNQDASVEEVSENPRARSARLR 316 Query: 313 AGMRTVERSIEDDSFVHLPRLPTLSQFRG 341 AG R + D +H +P L+ F G Sbjct: 317 AGRRLDSPARPLD--IHEAGVPRLASFHG 343 >gi|21230192|ref|NP_636109.1| S-adenosyl-methyltransferase MraW [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|188993033|ref|YP_001905043.1| S-adenosyl-methyltransferase MraW [Xanthomonas campestris pv. campestris str. B100] gi|24212033|sp|Q8PCK7|RSMH_XANCP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263504525|sp|B0RVB2|RSMH_XANCB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|21111730|gb|AAM40033.1| cell division protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|167734793|emb|CAP53003.1| S-adenosyl-methyltransferase [Xanthomonas campestris pv. campestris] Length = 342 Score = 356 bits (914), Expect = 3e-96, Method: Composition-based stats. Identities = 123/331 (37%), Positives = 177/331 (53%), Gaps = 11/331 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69 + HVPVL +V+ L LD TFG GG++R + G ++ +D+DP Sbjct: 1 MSQPPAAHVPVLYTQVLEGLQVTENGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDPE 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 A++ + T + S+ + +F+ L V VDG++ DLGVSS Q+D RGFSF K Sbjct: 61 AIAVAEHTFGG-DARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLDVAGRGFSFGK 119 Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM SG SA+ + QA +++ +L GEE+Q+ RIA AIV RR P T Sbjct: 120 DGPLDMRMDPDSGQSAAGWLAQATDREIADVLWTYGEERQSRRIARAIVARRGEQPLLRT 179 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ LI + +++ HPATRSFQA+RI +N E+ +L GL +A ALK GG L V+ Sbjct: 180 AQLADLIASVMPRG-DSKTHPATRSFQAIRIHINRELADLEAGLDAALGALKPGGRLAVI 238 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDR+VK+F A + + R + + Q ++ + ++A N R+RS Sbjct: 239 SFHSLEDRIVKQFMARYAKAPPSNRRLPEAQPFVPTLQLVS-GAIKADDSELAVNPRARS 297 Query: 309 AKLRAGMR----TVERSIEDDSFVHLPRLPT 335 A LR + E + R PT Sbjct: 298 AVLRVAEKLGMENRESGMGKGHGAAASRFPT 328 >gi|114330281|ref|YP_746503.1| S-adenosyl-methyltransferase MraW [Nitrosomonas eutropha C91] gi|123321952|sp|Q0AJD3|RSMH_NITEC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|114307295|gb|ABI58538.1| S-adenosyl-methyltransferase MraW [Nitrosomonas eutropha C91] Length = 317 Score = 356 bits (914), Expect = 3e-96, Method: Composition-based stats. Identities = 115/318 (36%), Positives = 177/318 (55%), Gaps = 18/318 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H+ VLLE+ + LN G + +D T+G GG+SR +IA D+DP A+S + Sbjct: 1 MHISVLLEEAVDALNIQKGGIYVDGTYGRGGHSRLILSRLDKSGQLIAFDKDPAAISEAR 60 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + E+F ++++ + + G VDG++ DLGVSS+Q+D RGFSF+ GP Sbjct: 61 SIL---DERFQAVHSSYAGMYTALQSLGINRVDGILLDLGVSSIQLDEASRGFSFRHDGP 117 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G +A++ + A+ +L I+ GEE+ A +IA AIV + P TT L Sbjct: 118 LDMRMDSSRGKTAAEWLTMASETELKEIIRTYGEERYAGQIASAIVMEQARQPISTTLRL 177 Query: 192 SSLIQKTVYFS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 + ++ V +++R HPATR+FQA+RI +N E+EEL+ L + L GG L+V+S Sbjct: 178 AEIVAAVVRKRGHRDDRQHPATRTFQAIRIHLNQELEELSMTLPQCVELLNTGGRLVVIS 237 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNR 304 FHSLEDR+VK+F ++G R + + I KK + P ++V+ N Sbjct: 238 FHSLEDRIVKRFMRMQTGTDTLPRRLPIREEESRLHNQQKLRIIGKK-IRPGSDEVSANP 296 Query: 305 RSRSAKLRAGMRTVERSI 322 R+RSA +R + R+ Sbjct: 297 RARSAVMRVAEKLETRNA 314 >gi|26988063|ref|NP_743488.1| S-adenosyl-methyltransferase MraW [Pseudomonas putida KT2440] gi|38258006|sp|Q88N84|RSMH_PSEPK RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|24982787|gb|AAN66952.1|AE016324_2 conserved hypothetical protein TIGR00006 [Pseudomonas putida KT2440] Length = 315 Score = 356 bits (914), Expect = 3e-96, Method: Composition-based stats. Identities = 114/308 (37%), Positives = 174/308 (56%), Gaps = 12/308 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 +H+ VLL++ + L LD TFG GG+SR ++ D+DP A++ GQ Sbjct: 8 NHITVLLDEAVEALALRADGCYLDGTFGRGGHSRLILSKLGPQGRLLGFDKDPQAIATGQ 67 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +F + Q +F++L V +G V GV+ DLGVSS Q+D +RGFSF G Sbjct: 68 A-LAAEDGRFVIVQRSFAELGAEVAARGLHGKVSGVLLDLGVSSPQLDDPERGFSFLNDG 126 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ G+SA++ + A V+++ R+ GEE+ A R+A A+V+RR+ PF T D Sbjct: 127 PLDMRMNPDQGVSAAEFIATAPVEEIARVFKEYGEERFAGRMARAVVERREKQPFTRTAD 186 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ +++ + + +PATR+FQ LRI VNNE+ +L GL +A AL+ GG L V+SF Sbjct: 187 LAEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLAVISF 245 Query: 251 HSLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFNRRSRS 308 HSLEDR+VK F G+ + +P + + K ++ ++ N RSRS Sbjct: 246 HSLEDRIVKLFMRKLVKGEADNLPRNLPVQHKVFEPKIKLIGKAQFASEAELKANPRSRS 305 Query: 309 AKLRAGMR 316 A +R + Sbjct: 306 AVMRVAEK 313 >gi|283379446|dbj|BAI66129.1| S-adenosyl-methyltransferase [Neisseria gonorrhoeae] gi|283379452|dbj|BAI66134.1| S-adenosyl-methyltransferase [Neisseria gonorrhoeae] Length = 314 Score = 356 bits (914), Expect = 3e-96, Method: Composition-based stats. Identities = 113/312 (36%), Positives = 168/312 (53%), Gaps = 10/312 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H+ VLL + + L V +D TFG GG+SR +I D+DP A++ +E Sbjct: 5 HITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFDKDPQAIAVAEE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + ++ + F+ Q + G VDG +FDLG+SS QID G RGFSF+ PL Sbjct: 65 -LARSDKRVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGSRGFSFRFDAPL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + G+SA++ + A+ +DL ++ GEE+ + +I AIV +R +P TT+ L+ Sbjct: 124 DMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIVRAIVAQRAESPIDTTRKLA 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++ + V + + PATR+FQA+RIF+N E+EE+ L LK GG L V++FHS Sbjct: 184 QIVAQNVRTRERGQ-DPATRTFQAIRIFINRELEEVGAVLPQVMCRLKEGGRLAVIAFHS 242 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK+F S A P I + + P + ++A N R+RSA L Sbjct: 243 LEDRIVKQFVKKYSQHEPLPSWAAVREADLPEPPLKIVGRALKPGEAEIAANPRARSAVL 302 Query: 312 RAGMRTVERSIE 323 R RT E Sbjct: 303 RVAERTAGPIPE 314 >gi|313500445|gb|ADR61811.1| MraW [Pseudomonas putida BIRD-1] Length = 315 Score = 356 bits (914), Expect = 3e-96, Method: Composition-based stats. Identities = 115/308 (37%), Positives = 174/308 (56%), Gaps = 12/308 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 +H+ VLL++ + L LD TFG GG+SR ++ D+DP A++ GQ Sbjct: 8 NHITVLLDEAVEALALRADGCYLDGTFGRGGHSRLILSKLGPQGRLLGFDKDPQAIATGQ 67 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +F + Q +F++L V +G V GV+ DLGVSS Q+D +RGFSF G Sbjct: 68 A-LAAEDGRFVIVQRSFAELGAEVAARGLHGKVSGVLLDLGVSSPQLDDPERGFSFLNDG 126 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ GISA++ + A V+++ R+ GEE+ A R+A A+V+RR+ PF T D Sbjct: 127 PLDMRMNPDQGISAAEFIATAPVEEIARVFKEYGEERFAGRMARAVVERREKQPFTRTAD 186 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ +++ + + +PATR+FQ LRI VNNE+ +L GL +A AL+ GG L V+SF Sbjct: 187 LAEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLAVISF 245 Query: 251 HSLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFNRRSRS 308 HSLEDR+VK F G+ + +P + + K ++ ++ N RSRS Sbjct: 246 HSLEDRIVKLFMRKLVKGEADNLPRNLPVQHKAFEPKIKLIGKAQFASEAELKANPRSRS 305 Query: 309 AKLRAGMR 316 A +R + Sbjct: 306 AVMRVAEK 313 >gi|282880611|ref|ZP_06289317.1| S-adenosyl-methyltransferase MraW [Prevotella timonensis CRIS 5C-B1] gi|281305506|gb|EFA97560.1| S-adenosyl-methyltransferase MraW [Prevotella timonensis CRIS 5C-B1] Length = 312 Score = 356 bits (914), Expect = 3e-96, Method: Composition-based stats. Identities = 110/309 (35%), Positives = 166/309 (53%), Gaps = 17/309 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC--- 73 HVPVLLE+ I LN P + +DATFG GG+S ++ + D+D A Sbjct: 10 HVPVLLEQSIEGLNIHPEGIYVDATFGGGGHSMEILSHLNEKGHLFSFDQDLDAEKNIQQ 69 Query: 74 -GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQK 129 G E + ++ F+ ++ F L++++ + DG++ DLGVSS D +RGFSF+ Sbjct: 70 EGHEVL--LQDNFTFIRSNFRYLKNWMRYYKIEKIDGILADLGVSSHHFDDENRGFSFRF 127 Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM+ + ++A+DV+N N + L I + GE K A RIA +VK R +T Sbjct: 128 DAPLDMRMNTKASLTAADVINTYNEEQLADIFYLYGELKNARRIASLLVKARSQKNITST 187 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 DL ++ F K + FQALRI VN+E+E L + L SA++ L GG L+V+ Sbjct: 188 HDLIQAVEAV--FGKVREKKDLAKLFQALRIEVNHEMEALKELLNSAQELLTTGGRLVVI 245 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 ++HSLEDR+VK + + + + F+ + KV+ PT ++ N RSRS Sbjct: 246 TYHSLEDRMVKNIMKTGNVQGKVQQDFF--GRIETTFKLLNNKVITPTPQEQQENPRSRS 303 Query: 309 AKLRAGMRT 317 AKLR + Sbjct: 304 AKLRIAEKI 312 >gi|333029398|ref|ZP_08457459.1| Ribosomal RNA small subunit methyltransferase H [Bacteroides coprosuis DSM 18011] gi|332739995|gb|EGJ70477.1| Ribosomal RNA small subunit methyltransferase H [Bacteroides coprosuis DSM 18011] Length = 305 Score = 356 bits (914), Expect = 3e-96, Method: Composition-based stats. Identities = 104/304 (34%), Positives = 159/304 (52%), Gaps = 16/304 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H+PVLL + I LN P + +D TFG GG+S+ ++ + D+D A + Sbjct: 10 HIPVLLNESINGLNIDPQGIYVDVTFGGGGHSKEILSHLAPTGHLFSFDQDKDAEKNSFQ 69 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +F+ ++ F +++++ V G++ DLGVSS D +RGFSF+ L Sbjct: 70 -----DSRFTFVRSNFRYIKNFLQYYHVTEVSGILADLGVSSHHFDESERGFSFRFDADL 124 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ + +A+D+VN + + L + + GE K + RIA IVK R P +T Sbjct: 125 DMRMNTRASKTAADIVNNYSQEQLADVFYLYGELKNSRRIASKIVKYRAENPIKTIAQFI 184 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I T F + + FQALRI VN E+E L + L SA LK GG L V+++HS Sbjct: 185 EVI--TPLFGPQRQKKDFAKVFQALRIEVNEEMEALREMLISAIGLLKPGGRLAVITYHS 242 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK F + + + + P ++I KV++PT ++ N RSRSAKLR Sbjct: 243 LEDRMVKNLFKTGNIEGKLNKDFYGKIISP--IKAINNKVIIPTDQEQELNPRSRSAKLR 300 Query: 313 AGMR 316 + Sbjct: 301 IAEK 304 >gi|300741256|ref|ZP_07071277.1| S-adenosyl-methyltransferase MraW [Rothia dentocariosa M567] gi|300380441|gb|EFJ77003.1| S-adenosyl-methyltransferase MraW [Rothia dentocariosa M567] Length = 359 Score = 356 bits (914), Expect = 3e-96, Method: Composition-based stats. Identities = 117/308 (37%), Positives = 178/308 (57%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCG 74 HVPV+L++ + LL P V++D T G GG++ + + SN+ I +DRD A + Sbjct: 48 HVPVMLDRCLELLEPAISRQDAVVIDGTLGMGGHTEAMLERFSNLTVIGIDRDAQAHAIA 107 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E + + +F + ++D + GV DGV+ DLGVSSMQ+D RGF++ Sbjct: 108 AERLARFGNRFVPVHTVYDHIEDAMSAAGVTSVDGVLLDLGVSSMQLDERSRGFAYSYDA 167 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ ++A VVN+ + L RI+ GEEK A+RIA IV++R+ PF TT + Sbjct: 168 PLDMRMNGDDELTARIVVNEYSENQLRRIIKNWGEEKFAARIAQHIVEQRKHTPFTTTGE 227 Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L + IQK V + + HPA R+FQALRI VN+E+E L + + +A AL+ GG + +S Sbjct: 228 LVAAIQKAVPAAAQRKGGHPAKRTFQALRIEVNHELEALERAVPAALDALRLGGRFVAMS 287 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 +HSLED++VK+ + + + H + IT+ PT+ ++A N R+ SA Sbjct: 288 YHSLEDKIVKRALTEAATSKAPKGFPVELDEHQPTIRVITRGAEPPTEAEIAENPRAASA 347 Query: 310 KLRAGMRT 317 KLRAG + Sbjct: 348 KLRAGEKI 355 >gi|302335888|ref|YP_003801095.1| S-adenosyl-methyltransferase MraW [Olsenella uli DSM 7084] gi|301319728|gb|ADK68215.1| S-adenosyl-methyltransferase MraW [Olsenella uli DSM 7084] Length = 323 Score = 356 bits (914), Expect = 3e-96, Method: Composition-based stats. Identities = 109/309 (35%), Positives = 175/309 (56%), Gaps = 12/309 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HVPV++++VIA L+P PG+ + D T G G++ + + +D+D A+ Sbjct: 7 HVPVMIDEVIAELDPRPGETVCDCTLGGAGHTLEMARRIQPDGLSLGIDQDDMALDAASA 66 Query: 77 TMRDYKE--QFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + F+ L D + GVD +FD+GVSS Q+D +RGFS+ + Sbjct: 67 RFERELPTARRRFLKGNFASLDDLLVQAEVPGVDCFLFDIGVSSPQLDIPERGFSYHEDA 126 Query: 132 PLDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM + ++A++V N N DL RIL + G+E+ A+RIA IV+ R+ AP +TT Sbjct: 127 PLDMRMGPGDNTLTAAEVTNSYNEADLARILRVYGDERNATRIARQIVRTREKAPIETTL 186 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L +I+ + + + + HPA ++FQALRI VN+E++ L QGLR+A + GG + V+ Sbjct: 187 QLVEVIKAAIPAAGRRHGGHPARKTFQALRIEVNHELDALDQGLRAAVRWANTGGRICVI 246 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 S+HSLEDR+VK F S + + + H + T++ +V + +VA N R+R Sbjct: 247 SYHSLEDRIVKHVFTELSQGCVCPPDLPVCACGHVPIVDVRTRRPLVASDAEVARNPRAR 306 Query: 308 SAKLRAGMR 316 SA +R ++ Sbjct: 307 SALMRVAVK 315 >gi|255320234|ref|ZP_05361419.1| S-adenosyl-methyltransferase MraW [Acinetobacter radioresistens SK82] gi|262380450|ref|ZP_06073604.1| MraW methylase [Acinetobacter radioresistens SH164] gi|255302673|gb|EET81905.1| S-adenosyl-methyltransferase MraW [Acinetobacter radioresistens SK82] gi|262297896|gb|EEY85811.1| MraW methylase [Acinetobacter radioresistens SH164] Length = 303 Score = 356 bits (914), Expect = 3e-96, Method: Composition-based stats. Identities = 110/308 (35%), Positives = 164/308 (53%), Gaps = 16/308 (5%) Query: 20 HVPVLLEKVIAL-LNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H+ VLL + +A L + +DATFG GG+SR + V A D+DP A++ Sbjct: 3 HISVLLHETVAAVLAERNTGIYVDATFGRGGHSRELLAQLNTDAQVYAFDKDPQALAVAA 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + +F + A+F+ L+ + G VDG++ DLGVSS Q+D +RGFSF + GP Sbjct: 63 E-LEQQDARFKIIHASFADLKQELEKIGITEVDGIMADLGVSSPQLDQAERGFSFMQDGP 121 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G +A++ + + L I+ GEE+ + R+A AI + TT L Sbjct: 122 LDMRMDNSQGQTAAEWLVNIEEEALANIIYQYGEERYSRRLARAIKQA---GYIATTGQL 178 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + L++ + ++ HPATR+FQA+RI +N E+E++ L A LK G L V+SFH Sbjct: 179 AELVKAAHPKWEKHK-HPATRTFQAIRIAINKELEDIELFLPQAVDILKPHGRLAVISFH 237 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPS-NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDRL+K+F S +P + I++ + + +V N RSRSA Sbjct: 238 SLEDRLIKQFIQKESSLAEDSGWGMPQIQQDTRRLKKISR--IKASDAEVKENPRSRSAW 295 Query: 311 LRAGMRTV 318 LR R Sbjct: 296 LRVAERLA 303 >gi|212635034|ref|YP_002311559.1| S-adenosyl-methyltransferase MraW [Shewanella piezotolerans WP3] gi|262826550|sp|B8CM48|RSMH_SHEPW RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|212556518|gb|ACJ28972.1| S-adenosyl-methyltransferase mraW [Shewanella piezotolerans WP3] Length = 318 Score = 356 bits (914), Expect = 3e-96, Method: Composition-based stats. Identities = 117/308 (37%), Positives = 173/308 (56%), Gaps = 13/308 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 +H+ VLL + +A LN + +D TFG GG+SR + +IA+DRDP A+ Sbjct: 6 EHLSVLLTETVAGLNIREDGIYIDGTFGRGGHSRKVLEQLGPNGRLIAIDRDPQAILAA- 64 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E +D +F + F QL YV + G +DGV+ D GVSS Q+D +RGFSF + G Sbjct: 65 EQFKD-DSRFQIVHGGFGQLAQYVEELGLKGKIDGVLLDFGVSSPQLDDAERGFSFLRDG 123 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S G +A+ + +A ++D+ + GEEK + IA I R+ PF T++ Sbjct: 124 PLDMRMDNSQGQTAAQWIARAEIEDMAWVFKTYGEEKNSRHIARCIAADREKTPFLRTKE 183 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ LI + + N+ HPATR FQA+RI++N+E+E++ Q L A L G L V+SF Sbjct: 184 LADLIARITKNKERNK-HPATRVFQAIRIYINSELEQIDQALEGALTVLAPEGRLSVISF 242 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI--TKKVVVPTQEDVAFNRRSRS 308 HSLEDR+VK+F S + + A + + K + P+ E++ N R+RS Sbjct: 243 HSLEDRMVKRFIRRHSQGESVPHGLPITEAEINKSRKLKGIGKAIKPSAEEIERNARARS 302 Query: 309 AKLRAGMR 316 + LR G R Sbjct: 303 SVLRIGER 310 >gi|71281391|ref|YP_271121.1| S-adenosyl-methyltransferase MraW [Colwellia psychrerythraea 34H] gi|88909194|sp|Q47VQ1|RSMH_COLP3 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|71147131|gb|AAZ27604.1| S-adenosyl-methyltransferase MraW [Colwellia psychrerythraea 34H] Length = 316 Score = 356 bits (913), Expect = 3e-96, Method: Composition-based stats. Identities = 120/314 (38%), Positives = 180/314 (57%), Gaps = 14/314 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H+ VLL + + L +D TFG GG+S +IA+DRDP A++ E Sbjct: 7 HISVLLNEAVDGLAITDDGCYIDCTFGRGGHSSVILSKLSDNGRLIAIDRDPTAITAA-E 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +D ++F + F+ L + VDG++ DLGVSS Q+D +RGFSF K GP Sbjct: 66 KFKD-DKRFLIEHQGFAALAEIAEKHELTGKVDGILLDLGVSSPQLDEAERGFSFMKDGP 124 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G +A++ + A+V+D+T +L GEEK A RIA+AIV R+ P T L Sbjct: 125 LDMRMDTSKGQTAAEWLAVADVEDITWVLRTFGEEKHAWRIANAIVDTREETPLTRTSQL 184 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI+ T + + HPATRSFQA+R+++N+E++++ + L ++ L GG L+V+SFH Sbjct: 185 AKLIKTTAP-QREIKKHPATRSFQAIRMYINSELDQIEKALVASLDVLAEGGRLVVISFH 243 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT--KKVVVPTQEDVAFNRRSRSA 309 SLEDRLVK+F S R + S + ++ + + P+Q +V N RSRS+ Sbjct: 244 SLEDRLVKQFMKKHSQGKKVPRGLPISEIELNKGKKLSLVGRRLKPSQTEVEENVRSRSS 303 Query: 310 KLRAGMRTVERSIE 323 LR R +ER+ + Sbjct: 304 VLRVAER-LERNTD 316 >gi|256390851|ref|YP_003112415.1| S-adenosyl-methyltransferase MraW [Catenulispora acidiphila DSM 44928] gi|256357077|gb|ACU70574.1| S-adenosyl-methyltransferase MraW [Catenulispora acidiphila DSM 44928] Length = 316 Score = 356 bits (913), Expect = 4e-96, Method: Composition-based stats. Identities = 128/314 (40%), Positives = 181/314 (57%), Gaps = 10/314 (3%) Query: 16 TIGDHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFA 70 T H+PV+LE+ + +L P PG V+LDAT G GG+S +F + +I LDRDP A Sbjct: 2 TSATHIPVMLERCVEILGPALERPGAVVLDATLGLGGHSEAFLRRFPDVRLIGLDRDPQA 61 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSF 127 + + + E+ +L A + ++ D + GV G +FDLGVSS+Q+D +RGF++ Sbjct: 62 LEASGRRLAPFGERATLVHAVYDEIPDVLERLGVAELSGTLFDLGVSSLQLDMRERGFAY 121 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 PLDMRM S GI+A+D+VN D+ RIL GEE+ A RIA IV R+ PF Sbjct: 122 SYDAPLDMRMDSSRGITAADIVNTYPAADIARILRDYGEERFARRIADRIVAEREKEPFT 181 Query: 187 TTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT LS L++ ++ + + HPA R+FQALRI VN+E+ L + L +A A GG + Sbjct: 182 TTARLSDLVRDSIPAATRRTGGHPAKRAFQALRIAVNDELPVLERALPAAVAATGLGGRI 241 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V+S+HSLEDRLVK+ FA S + + F+ +T+ PT + A N R Sbjct: 242 AVLSYHSLEDRLVKRVFAKASESAAPPGLPVVPEQYQPKFRLLTRGAEPPTDAETAENPR 301 Query: 306 SRSAKLRAGMRTVE 319 + SAKLRA R E Sbjct: 302 AASAKLRAAERVRE 315 >gi|157368998|ref|YP_001476987.1| S-adenosyl-methyltransferase MraW [Serratia proteamaculans 568] gi|262826478|sp|A8G9R9|RSMH_SERP5 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|157320762|gb|ABV39859.1| S-adenosyl-methyltransferase MraW [Serratia proteamaculans 568] Length = 313 Score = 356 bits (913), Expect = 4e-96, Method: Composition-based stats. Identities = 121/309 (39%), Positives = 171/309 (55%), Gaps = 15/309 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H VLL++ + LN +D TFG GG+SR ++A+DRDP A++ + Sbjct: 6 KHTTVLLDEAVNGLNIRSNGTYIDGTFGRGGHSRLILSQLGPEGRLLAIDRDPQAIAAAK 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +FS+ FS L YV ++ +DG++ DLGVSS Q+D +RGFSF + G Sbjct: 66 SI---EDPRFSIVHGPFSDLSHYVRERELVGQIDGILLDLGVSSPQLDDAERGFSFMRDG 122 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S G SAS+ + +A D+ +L GEE+ A RIA AIV+R Q P T+ Sbjct: 123 PLDMRMDSSSGQSASEWLMKAEADDIAWVLKTFGEERFAKRIARAIVERNQVDPMTRTKQ 182 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ LI F ++ HPATRSFQA+RI++N+E+EE+ + L A + L G L V+SF Sbjct: 183 LADLIANASPF-RDKHKHPATRSFQAIRIYINSELEEIERALDGALEVLAPQGRLSVISF 241 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNRRSR 307 HSLEDR+VK+F S + + A T K + +P +VA N R+R Sbjct: 242 HSLEDRIVKRFMRHHSRGAQVPAGIPLTEAQLRSMGGRTLKALGKMMPGDAEVAENPRAR 301 Query: 308 SAKLRAGMR 316 S+ LR R Sbjct: 302 SSVLRIAER 310 >gi|197334561|ref|YP_002157005.1| S-adenosyl-methyltransferase MraW [Vibrio fischeri MJ11] gi|263504510|sp|B5FB43|RSMH_VIBFM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|197316051|gb|ACH65498.1| S-adenosyl-methyltransferase MraW [Vibrio fischeri MJ11] Length = 316 Score = 356 bits (913), Expect = 4e-96, Method: Composition-based stats. Identities = 118/312 (37%), Positives = 166/312 (53%), Gaps = 18/312 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 HV VLL + I L P + +D TFG GG+SR + ++DRDP A++ + Sbjct: 7 HVSVLLHESIDGLAIKPDGIYIDGTFGRGGHSRQILSQLGENGRLYSIDRDPQAIAEAKT 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +F++ FS L+ YV + +DGV+ DLGVSS Q+D +RGFSF K GP Sbjct: 67 I---TDPKFTIIHGPFSGLKQYVEELELVGKIDGVLLDLGVSSPQLDDAERGFSFMKDGP 123 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---PFQTT 188 LDMRM SGI S + +A+V+D+T ++ GE+K A RIA IV R++ P T Sbjct: 124 LDMRMDPTSGIPVSQWLQEADVEDITWVIREFGEDKHAWRIAKGIVAYRENEENEPLTRT 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ LI + S + HPATR+FQA RI++N+E++E+ L+ A L G L V+ Sbjct: 184 SQLAKLISEVAPKSFKEKKHPATRAFQAFRIYINSELDEIDTALKGALDVLAPEGRLSVI 243 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVVVPTQEDVAFNR 304 SFHSLEDR+VK F S + + K + PT+ +V N Sbjct: 244 SFHSLEDRMVKHFIRKESKGPQVPHGLPLTEEQIKALGSAKMKPVGKAIKPTKNEVDVNV 303 Query: 305 RSRSAKLRAGMR 316 RSRS+ LR R Sbjct: 304 RSRSSVLRIAER 315 >gi|325102881|ref|YP_004272535.1| S-adenosyl-methyltransferase MraW [Pedobacter saltans DSM 12145] gi|324971729|gb|ADY50713.1| S-adenosyl-methyltransferase MraW [Pedobacter saltans DSM 12145] Length = 302 Score = 356 bits (913), Expect = 4e-96, Method: Composition-based stats. Identities = 115/305 (37%), Positives = 165/305 (54%), Gaps = 16/305 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 HVPV+L + I L+ P V +D TFG GG+SR K ++A D+D A Sbjct: 6 HVPVMLSECIEGLDIKPDGVYVDVTFGGGGHSREIIKHLGEDGVLVAFDQDVDAQQN--- 62 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 R ++F F L++ + G VDG++ DLGVSS Q D +RGFS + G L Sbjct: 63 --RIADDRFVFIDQNFRYLKNNLRLHGLAPVDGILADLGVSSHQFDVPERGFSIRFDGDL 120 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM SG ++A V+ + + ++L +I GI GE + A +A IV R + T +DL Sbjct: 121 DMRMDQSGELTAKKVIGEYSEEELHKIFGIYGEIQNARSLAKTIVTARLNKEIVTIEDLK 180 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 S I K + +K N+ + FQALRI VN E+E L + L A + LK GG L+V+S+HS Sbjct: 181 SAIAKLIPRNKENK--YLAQVFQALRIEVNQEMEVLKEFLEQAAEVLKPGGRLVVMSYHS 238 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDRLVK F + + P F +TKK + ++E++ N RSRSA+LR Sbjct: 239 LEDRLVKNFMMKGKFSGQVEKDFYGNEIKP--FTVLTKKSITASEEELLRNNRSRSARLR 296 Query: 313 AGMRT 317 ++ Sbjct: 297 IAVKN 301 >gi|32129733|sp|Q87AF2|RSMH_XYLFT RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263506475|sp|B2I9C0|RSMH_XYLF2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 313 Score = 356 bits (913), Expect = 4e-96, Method: Composition-based stats. Identities = 115/305 (37%), Positives = 170/305 (55%), Gaps = 10/305 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HVPVL + + L LD TFG GG++R + G ++ +D+DP A++ E Sbjct: 3 HVPVLYTQAMEGLRVVENGTYLDGTFGRGGHARGVLQQLGPGGRLLVMDKDPEAIAMA-E 61 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + + +F+ L + +DGV+FDLGVSS Q+D +RGFSF K GPLDMR Sbjct: 62 RAFSCDPRVVIRHGSFALLAQLAAPQSLDGVLFDLGVSSPQLDVPERGFSFAKDGPLDMR 121 Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M G SA+ + + + +++ +L GEEKQ+ RIA AIV R + P T L+ LI Sbjct: 122 MDPEMGESAAQWLARVSEREIADVLWTYGEEKQSRRIARAIVAYRANQPLLRTVQLAELI 181 Query: 196 QKTVYFSK----NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +K +RIHPATRSFQ +RI VN E+ +L GL +A AL+ GG L+V+SFH Sbjct: 182 ASVMLRTKFGACKSRIHPATRSFQGIRIHVNRELVDLEVGLEAALAALRPGGRLVVISFH 241 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+VK+F + S R + + + I + + ++++ N R+RSA L Sbjct: 242 SLEDRIVKQFISRHSKVPPTNRRLPEVQTFVPLLRMIGR-AIKADEDELEVNPRARSAVL 300 Query: 312 RAGMR 316 R + Sbjct: 301 RVAEK 305 >gi|269104116|ref|ZP_06156813.1| S-adenosyl-methyltransferase MraW [Photobacterium damselae subsp. damselae CIP 102761] gi|268164014|gb|EEZ42510.1| S-adenosyl-methyltransferase MraW [Photobacterium damselae subsp. damselae CIP 102761] Length = 315 Score = 356 bits (913), Expect = 4e-96, Method: Composition-based stats. Identities = 116/313 (37%), Positives = 176/313 (56%), Gaps = 19/313 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 +HV VLL + + L P + +D TFG GG+SR + ++DRDP A++ Q Sbjct: 6 EHVSVLLHESVDGLAIKPDGIYIDGTFGRGGHSRLILSKLGENGRLYSIDRDPQAIAEAQ 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +F++ FS ++ Y+ ++ VDG++ DLGVSS Q+D +RGFSF + G Sbjct: 66 KI---DDPRFNIIHGPFSGMEKYMEERDLIGRVDGILLDLGVSSPQLDDAERGFSFMRDG 122 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ---SAPFQT 187 PLDMRM SG +AS+ + A+ D+ +L GEE+ A RIA IV+ R+ P Sbjct: 123 PLDMRMDPTSGQAASEWLATADASDIAWVLKEFGEERFAKRIARGIVEHREDPEKEPLTR 182 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T L++LI + F K+ HPATRSFQA+RI++N+E++E+A L A L GG L V Sbjct: 183 TLQLANLIAQVSPF-KDKHKHPATRSFQAIRIYINSELDEIATALNGAVNILAPGGRLSV 241 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVVVPTQEDVAFN 303 +SFHSLEDR+VK+F ++S + + + K + P+Q ++ +N Sbjct: 242 ISFHSLEDRMVKRFMRNKSKGPEIPAGLPLTEEQIKALGSADLKLASKAIKPSQNELGYN 301 Query: 304 RRSRSAKLRAGMR 316 R+RS+ LR R Sbjct: 302 ARARSSVLRLAER 314 >gi|218258181|ref|ZP_03474583.1| hypothetical protein PRABACTJOHN_00237 [Parabacteroides johnsonii DSM 18315] gi|218225704|gb|EEC98354.1| hypothetical protein PRABACTJOHN_00237 [Parabacteroides johnsonii DSM 18315] Length = 310 Score = 356 bits (913), Expect = 4e-96, Method: Composition-based stats. Identities = 106/304 (34%), Positives = 160/304 (52%), Gaps = 17/304 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 HVPV+L + + L P V +D TFG GG+SR + D+D A E Sbjct: 9 HVPVMLHESLEGLGIQPSGVYVDVTFGGGGHSREILNRLDNEGTLYGFDQDADA-----E 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +F ++ F L +++ GV DG++ DLGVSS D DRGFSF+ G Sbjct: 64 KNIPADSRFVFVRSNFRYLYNFMRYHGVAGEVDGLLADLGVSSHHFDDKDRGFSFRFDGA 123 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ +G +A+D+VN + L + + GE K A ++A +V+ R+ +T D Sbjct: 124 LDMRMNTRAGQTAADIVNTYTEEQLADLFYLYGELKVARKLASVLVRSREIKKIETIADF 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ K+ + FQALRI VN+E+ L + L+ + LK GG L+V+++H Sbjct: 184 LEVIKPFT--GKDKEKKFLAQVFQALRIEVNDEMRALREMLQQTLQVLKPGGRLVVITYH 241 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDRLVK F + + + A + + F+ + KV+VP+ E++ N RSRSAKL Sbjct: 242 SLEDRLVKNFLKTGNFEGKAEQDFF--GNIKSPFRLVNNKVIVPSGEEIERNPRSRSAKL 299 Query: 312 RAGM 315 R Sbjct: 300 RIAE 303 >gi|190572794|ref|YP_001970639.1| S-adenosyl-methyltransferase MraW [Stenotrophomonas maltophilia K279a] gi|262826755|sp|B2FNN0|RSMH_STRMK RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|190010716|emb|CAQ44325.1| putative S-adenosyl-methyltransferase mraW [Stenotrophomonas maltophilia K279a] Length = 322 Score = 355 bits (912), Expect = 4e-96, Method: Composition-based stats. Identities = 122/310 (39%), Positives = 180/310 (58%), Gaps = 8/310 (2%) Query: 12 AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDP 68 + + H+PVL +V+ L LD TFG GG++R ++ +D+DP Sbjct: 11 PVSQSPAVHLPVLYTQVLEGLRVIENGRYLDGTFGRGGHARGVLTQLGPEGRLLVMDKDP 70 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDY-VPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 A++ + + S+F+ +F+QL + +G+DGV+FDLGVSS Q+D +RGFSF Sbjct: 71 EAIAVAERDFAP-DPRVSIFRGSFAQLLQWDATAEGLDGVLFDLGVSSPQLDVAERGFSF 129 Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 K GPLDMRM SG SA+ +N+ +++ +L GEE+Q+ RIA AIV RR+ PF Sbjct: 130 GKDGPLDMRMDPDSGESAAQWINRVEEREIADVLWTYGEERQSRRIARAIVARREKQPFS 189 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T +L+ LI + K ++IHPATRSFQA+RI +N E+ +L GL +A + LK GG L Sbjct: 190 RTAELAELIASVMPRGK-DKIHPATRSFQAIRIHINRELADLEAGLDAAVERLKPGGRLA 248 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+SFHSLEDR+VK++ + A R + + A I + T E++A N R+ Sbjct: 249 VISFHSLEDRIVKQYMNRLAKAPPANRRLPEAVAFVPTLDLI-GGAIKATDEELAANPRA 307 Query: 307 RSAKLRAGMR 316 RSA LR + Sbjct: 308 RSAVLRVAQK 317 >gi|299142294|ref|ZP_07035427.1| S-adenosyl-methyltransferase MraW [Prevotella oris C735] gi|298576383|gb|EFI48256.1| S-adenosyl-methyltransferase MraW [Prevotella oris C735] Length = 315 Score = 355 bits (912), Expect = 5e-96, Method: Composition-based stats. Identities = 110/310 (35%), Positives = 167/310 (53%), Gaps = 17/310 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 HVPVLL+ + LN G + +D TFG GG+SR +++ + D+D A Sbjct: 9 HVPVLLKPSVDGLNIQSGGIYVDVTFGGGGHSREILSRLDNQAHLYSFDQDADAEQNVMH 68 Query: 77 TMRD------YKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSF 127 +F+ ++ F L++++ GV DG++ DLGVSS D RGFSF Sbjct: 69 REGSTEKRFVDDARFTFVRSNFRYLKNWMRYYGVEKIDGLLADLGVSSHHFDDESRGFSF 128 Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + PLDMRM+ +G++A+DVVN N + L + + GE KQ+ RIA A++K R Sbjct: 129 RFDAPLDMRMNKRAGLTAADVVNDYNEEALANLFYLYGELKQSRRIAAALIKARAQQRIA 188 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 TTQD + F + + FQALRI VN+E++ L + L+SA + L++GG L Sbjct: 189 TTQDFLKATEPL--FKREREKKDMAKLFQALRIEVNHEMDALKEMLQSATELLRSGGRLS 246 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+++HSLEDR+VK + + + V+ P F + KV+VP+ ++ N RS Sbjct: 247 VITYHSLEDRIVKNMMKAGNAEGKKVQDFYGRIETP--FNLVNNKVIVPSADEQQENPRS 304 Query: 307 RSAKLRAGMR 316 RSAKLR + Sbjct: 305 RSAKLRIAEK 314 >gi|312131313|ref|YP_003998653.1| s-adenosyl-methyltransferase mraw [Leadbetterella byssophila DSM 17132] gi|311907859|gb|ADQ18300.1| S-adenosyl-methyltransferase MraW [Leadbetterella byssophila DSM 17132] Length = 301 Score = 355 bits (912), Expect = 5e-96, Method: Composition-based stats. Identities = 110/303 (36%), Positives = 162/303 (53%), Gaps = 15/303 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77 H PV+L + + LN P + +D TFG GG+SR K ++ D+D A + Sbjct: 6 HKPVMLTECLQGLNIRPDGIYVDVTFGGGGHSREILKHLTTGHLYGFDQDADAQEQASKI 65 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 F+ +A F ++ Y+ GV DG++ DLG+SS QID +RGFS + G LD Sbjct: 66 SSP---NFTFIRANFRNIRKYLKIYGVSKVDGILADLGISSHQIDTPERGFSTRFDGELD 122 Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM+ S GISA +VVN+ +L +I G+ GE K A +A AI + T QDL Sbjct: 123 MRMNTSTGISAKEVVNEYAEDELHKIFGMYGELKNARSVARAI--ALEKGNIHTVQDLKD 180 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 ++ K N+ + + FQALRI VN E++ L + L + L GG L+V+S+HSL Sbjct: 181 TLKHLAPRGKENKFY--AQVFQALRIEVNEELKVLEEFLLQVPEVLAPGGRLVVMSYHSL 238 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 EDR VK F S + + + P Q++T+K V ++ ++A N R+RSAKLR Sbjct: 239 EDRPVKNFIRSGKFYGEVEKDLFGNEIKP--LQAVTRKAVEASEAEIAENPRARSAKLRI 296 Query: 314 GMR 316 + Sbjct: 297 AEK 299 >gi|229588482|ref|YP_002870601.1| S-adenosyl-methyltransferase MraW [Pseudomonas fluorescens SBW25] gi|262825100|sp|C3KCS2|RSMH_PSEFS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|229360348|emb|CAY47205.1| S-adenosyl-methyltransferase [Pseudomonas fluorescens SBW25] Length = 315 Score = 355 bits (912), Expect = 5e-96, Method: Composition-based stats. Identities = 116/308 (37%), Positives = 178/308 (57%), Gaps = 12/308 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 +H+ VLL++ + L LD TFG GG+SR ++ D+DP A++ GQ Sbjct: 8 NHITVLLDEAVEALAVRADGCYLDGTFGRGGHSRLILSQLGSDGKLLGFDKDPQAIATGQ 67 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +F + Q +F++L V ++G V GV+ DLGVSS Q+D +RGFSF G Sbjct: 68 A-LAAEDGRFVVVQRSFAELGAEVAERGMAGKVAGVLLDLGVSSPQLDDPERGFSFMNDG 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + G+SA+ + A V+++ R+ GEE+ A R+A A+V+RR+ PF+ T D Sbjct: 127 PLDMRMDPTRGVSAAQFIATAPVEEIARVFKEYGEERFAGRMARAVVERREIQPFERTAD 186 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ +++ + + +PATR+FQ LRI VNNE+ +L GL +A +AL+ GG L+V+SF Sbjct: 187 LAEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAALEALEVGGRLVVISF 245 Query: 251 HSLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFNRRSRS 308 HSLEDR+VK F G+ + +P V + I K ++ ++ N RSRS Sbjct: 246 HSLEDRIVKLFMRRLVKGESDNLPRNLPVRFEAFVPKIKIHGKAQFASEAELKANPRSRS 305 Query: 309 AKLRAGMR 316 A +R + Sbjct: 306 AVMRVAEK 313 >gi|83319603|ref|YP_424368.1| S-adenosyl-methyltransferase MraW [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|123535772|sp|Q2SS95|RSMH_MYCCT RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|83283489|gb|ABC01421.1| S-adenosyl-methyltransferase MraW [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 309 Score = 355 bits (912), Expect = 5e-96, Method: Composition-based stats. Identities = 105/310 (33%), Positives = 161/310 (51%), Gaps = 14/310 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 H+PVLL++ I LN + +D T G G++ K S + A+D+D A+ + Sbjct: 3 KHIPVLLDESIKYLNIKLNGIYVDCTLGRAGHASEILKRLSQNGFLYAIDQDKTAIGQAK 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + F L Q FS L + VDG+++DLGVSS Q+D G RGFS++ GP Sbjct: 63 EKLEKISNNFFLIQGNFSNLSALLAINHIFSVDGILYDLGVSSPQLDIGSRGFSYRIDGP 122 Query: 133 LDMRMS--CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM + ++A ++NQ + + IL GEE A IA IV R P +T Sbjct: 123 LDMRMDITNNNLTADTIINQYSETQIEDILFKYGEESFAKSIAKKIVLSR---PINSTLQ 179 Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I+ + + HPA ++FQALRIF+NNE+ L L+ A L + G + V++ Sbjct: 180 LVEVIKSALPQKVLKQKKHPAKKTFQALRIFINNELIVLENSLKQALDLLNSKGRICVIT 239 Query: 250 FHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 FHSLE+++VK F S + + ++ + F+ + KK + P+ ++ N RS Sbjct: 240 FHSLEEKIVKNIFNSSTNYFQEQLFNNLPIKANLNSQFKLVIKKPIKPSLLELENNHRSH 299 Query: 308 SAKLRAGMRT 317 SAKL + Sbjct: 300 SAKLWVIEKN 309 >gi|56551719|ref|YP_162558.1| S-adenosyl-methyltransferase MraW [Zymomonas mobilis subsp. mobilis ZM4] gi|59803046|sp|Q9REQ9|RSMH_ZYMMO RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|56543293|gb|AAV89447.1| S-adenosyl-methyltransferase MraW [Zymomonas mobilis subsp. mobilis ZM4] Length = 332 Score = 355 bits (912), Expect = 5e-96, Method: Composition-based stats. Identities = 143/331 (43%), Positives = 198/331 (59%), Gaps = 12/331 (3%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSNVIALDRD 67 M+S + H+PVLL++VI L+P G + +D TFGAGGYSR+ K + VIA DRD Sbjct: 1 MTS--DSFLAPHIPVLLDEVIEALSPVEGGIYIDGTFGAGGYSRAILEKADTQVIAFDRD 58 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQL---QDYVPDKGVDGVVFDLGVSSMQIDCGDRG 124 P A+ G + YK + L FS + D + K VDG+VFD+GVSSMQID +RG Sbjct: 59 PDAIREGASLVEKYKGRLRLVNDCFSNIGHHLDALDIKTVDGMVFDIGVSSMQIDRPERG 118 Query: 125 FSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 FS Q GPLDMRM+ +G+SA + +N A KD+ +L + GEE+Q+ R+A AIV R P Sbjct: 119 FSIQADGPLDMRMAQAGLSAEEFLNNAQEKDIADVLYLYGEERQSRRVARAIVAAR---P 175 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 TT L+ +I++++ + ++ PA FQA+RI +N E++EL GL++AE+ LK G Sbjct: 176 LTTTFQLAKVIRQSLGYRPFDKKDPAAHCFQAIRIHLNRELDELKDGLQTAERFLKTKGC 235 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 L VV+FHSLEDR+VK F +G+ RH VF S + V + ++A N Sbjct: 236 LAVVTFHSLEDRIVKHFMREHAGQTGQVSRHQPVIPQQNPVFFSKPARPVRAGETELARN 295 Query: 304 RRSRSAKLRAGMRTVERSIEDDSF--VHLPR 332 R+RSA LRA RT ED S H+PR Sbjct: 296 PRARSATLRAVYRTETPFSEDISRPDTHIPR 326 >gi|309379057|emb|CBX22359.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 319 Score = 355 bits (912), Expect = 6e-96, Method: Composition-based stats. Identities = 121/324 (37%), Positives = 172/324 (53%), Gaps = 13/324 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 MS ++ H+ VLL + + L V +D TFG GG+SR ++ D Sbjct: 1 MSETENY---RHITVLLHEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLVVFD 57 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGD 122 +DP AV+ +E + ++ S+ F+ Q + D G VDG +FDLGVSS QID Sbjct: 58 KDPRAVAAAEE-LARSDKRVSVVHGGFASFQTALDDLGIGDVDGALFDLGVSSPQIDDAA 116 Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF+ PLDMRM + G+SA++ + A+ +DL ++ GEE+ + +IA AIV +R Sbjct: 117 RGFSFRFDAPLDMRMDTTRGMSAAEWIASASEQDLHEVIKNYGEERFSRQIARAIVAQRA 176 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 P TT+ L+ L + V + + PATR+FQA+RIF+N E+EE+ L LK Sbjct: 177 ENPIDTTRKLAQLAAQNVRTRERGQ-DPATRTFQAVRIFINRELEEVEAVLPQVMCRLKQ 235 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDV 300 GG L V++FHSLEDR+VK+F S R A P I K + P +V Sbjct: 236 GGRLAVIAFHSLEDRIVKQFVGKYSRHAPLPRWAAVREADLPEPPLKIVGKALKPGGAEV 295 Query: 301 AFNRRSRSAKLRAGMRTVERSIED 324 A N R+RSA LR RT + Sbjct: 296 AANPRARSAVLRVAERTAGPIPAE 319 >gi|113460496|ref|YP_718560.1| S-adenosyl-methyltransferase MraW [Haemophilus somnus 129PT] gi|123031127|sp|Q0I1E1|RSMH_HAES1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|112822539|gb|ABI24628.1| S-adenosyl-methyltransferase [Haemophilus somnus 129PT] Length = 319 Score = 355 bits (911), Expect = 6e-96, Method: Composition-based stats. Identities = 123/326 (37%), Positives = 175/326 (53%), Gaps = 24/326 (7%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALD 65 M +H VLL + + L + +D TFG GG+SR S +IA+D Sbjct: 1 MQDTFSSP--EHFTVLLREAVGGLALKENGIYIDGTFGRGGHSRFILSQLSKKGQLIAID 58 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCG 121 RDP A+ Q +F + +FS + D G +DG++ DLGVSS Q+D Sbjct: 59 RDPQAIQVAQNI---QDSRFRIVHDSFSAIPDICEKLGLTGKIDGILLDLGVSSPQLDNA 115 Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF K GPLDMRM + G+SA++ + + +DL +L GEE+ A RIA AIV Sbjct: 116 ERGFSFMKDGPLDMRMDTTQGLSATEWLRLVSEQDLAWVLKTFGEERFAKRIAQAIVGYN 175 Query: 181 QS------APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234 +S P T L+ LI ++V F K+ HPATRSFQA+RIF+N+E++EL + L Sbjct: 176 KSAVQSGAEPLNRTLQLAELIAQSVPF-KDKYKHPATRSFQAIRIFINSELDELEKVLNG 234 Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA---HPAVFQSITKK 291 A L G L ++SFHSLEDR+VK F +S + + H + + K Sbjct: 235 ALNVLAPQGRLSIISFHSLEDRMVKHFIRKQSKGDDLPKGLPLREEQIQHNQKLKPV-GK 293 Query: 292 VVVPTQEDVAFNRRSRSAKLRAGMRT 317 ++PT++++A N RSRSA LR R Sbjct: 294 AIMPTEQEMAANVRSRSAVLRIAERI 319 >gi|163751816|ref|ZP_02159032.1| S-adenosyl-methyltransferase [Shewanella benthica KT99] gi|161328301|gb|EDP99462.1| S-adenosyl-methyltransferase [Shewanella benthica KT99] Length = 313 Score = 355 bits (911), Expect = 6e-96, Method: Composition-based stats. Identities = 123/308 (39%), Positives = 177/308 (57%), Gaps = 15/308 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H+ VLL + +A LN + +D TFG GG+SR K +IA+DRDP A+ ++ Sbjct: 7 HLSVLLSETVAGLNIKQDGIYIDGTFGRGGHSREVLKHLGGNGRLIAIDRDPQAIEAAKQ 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 D +FS+ F QL YV D G +DGV+ D GVSS Q+D +RGFSF + GP Sbjct: 67 FADD--SRFSIVHGGFGQLATYVEDLGLKGKIDGVLLDFGVSSPQLDDAERGFSFLRDGP 124 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G +A++ + +A ++D+ + GEEK + IA I RQ PF T++L Sbjct: 125 LDMRMDNSQGETAAEWIARAEIEDMAWVFKTYGEEKNSRHIARCIAADRQKTPFLRTKEL 184 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI + + N+ HPATR FQA+RI++N+E+E++ Q L A L G L V+SFH Sbjct: 185 ADLIARICKSKERNK-HPATRVFQAIRIYINSELEQIDQALEGALVVLAPQGRLSVISFH 243 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK---KVVVPTQEDVAFNRRSRS 308 SLEDR+VK+F R+ + +V H +P + K K P+ E+V N+R+RS Sbjct: 244 SLEDRMVKRFIR-RNCQGKSVPHGLPITEDELDKTRLLKSIGKATKPSAEEVERNKRARS 302 Query: 309 AKLRAGMR 316 + LR R Sbjct: 303 SILRVAER 310 >gi|254460590|ref|ZP_05074006.1| S-adenosyl-methyltransferase MraW [Rhodobacterales bacterium HTCC2083] gi|206677179|gb|EDZ41666.1| S-adenosyl-methyltransferase MraW [Rhodobacteraceae bacterium HTCC2083] Length = 327 Score = 355 bits (911), Expect = 6e-96, Method: Composition-based stats. Identities = 136/321 (42%), Positives = 192/321 (59%), Gaps = 6/321 (1%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQE 76 H+PVLL ++ +P G LD TFGAGGY+R+ G++ VIA+DRDP A Q Sbjct: 8 APHIPVLLGPILKAADPISGG-WLDGTFGAGGYTRALLDAGADSVIAVDRDPLAFEMAQP 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 Y + + FS + ++ D +DGVV DLGVSSMQ+D +RGFSF + GPLDMR Sbjct: 67 WADQYGARLIQQRGVFSDMAEFAQD--LDGVVLDLGVSSMQLDRAERGFSFMRDGPLDMR 124 Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 M G SA+D+VN + +++ IL GEE+ + RIA AIV+ R P TT L+ LI+ Sbjct: 125 MGQEGQSAADIVNDYDAEEIAEILYNYGEERASRRIARAIVELRAETPITTTLQLAGLIE 184 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 K + K + HPATRSFQALRI VN+E EL +GL +AE+AL GGLL +V+FHS+EDR Sbjct: 185 KCLPRKKPGQSHPATRSFQALRIAVNDEYGELYRGLMAAERALAPGGLLAIVTFHSVEDR 244 Query: 257 LVKKFFASRSGKVMAVRHMIPS-NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 + K+F SR+G P + F+ +++K + ++ ++ N R+RSAKLR Sbjct: 245 MAKRFLQSRAGTTGNANRFAPQLDVEKPAFELLSRKAITASEFELENNVRARSAKLRLAR 304 Query: 316 RTVERSIE-DDSFVHLPRLPT 335 RT + + + +P L Sbjct: 305 RTDAHAGDIAPKTLGMPMLRR 325 >gi|85707758|ref|ZP_01038824.1| S-adenosyl-methyltransferase [Erythrobacter sp. NAP1] gi|85689292|gb|EAQ29295.1| S-adenosyl-methyltransferase [Erythrobacter sp. NAP1] Length = 313 Score = 355 bits (911), Expect = 6e-96, Method: Composition-based stats. Identities = 139/312 (44%), Positives = 197/312 (63%), Gaps = 9/312 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQE 76 H PVLL++V+A + P+P I+DATFGAGGYSR+ + G+ V A DRDP A+ GQ Sbjct: 2 TAPHTPVLLDEVVAAIQPSPDMAIIDATFGAGGYSRALLEKGARVYAFDRDPNAIRDGQG 61 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + ++ + SL FS +++ + GV D VV D+GVSSMQ+D G+RGF+F GPL Sbjct: 62 MVAEFDGRLSLHAERFSSMREEMTRIGVPQVDAVVMDIGVSSMQLDQGERGFAFSADGPL 121 Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 DMRMS +G SA+D +N A+ + +L GEE+Q+ R+A AIV R P +TT DL+ Sbjct: 122 DMRMSQAGESAADFLNTADEAAIADVLYQYGEERQSRRVARAIVAAR---PLETTGDLAR 178 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 +++K + +++ PATRSFQA+RI VN+E+ EL GL +AE L+ GG+L VVSFHSL Sbjct: 179 VVRKALGHKPHDKKDPATRSFQAVRIHVNDELGELRAGLNAAETLLREGGVLAVVSFHSL 238 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 EDR+VK+F SG AV +P P F ++ K + P+ ++ N RSRS+ L Sbjct: 239 EDRIVKRFLKEASGAGRAVSRHLPGEVPGPPPTFTRVS-KAIRPSGAEIERNPRSRSSIL 297 Query: 312 RAGMRTVERSIE 323 R +RT + E Sbjct: 298 RHAIRTSAPARE 309 >gi|169794472|ref|YP_001712265.1| S-adenosylmethionine methyltransferase [Acinetobacter baumannii AYE] gi|184159721|ref|YP_001848060.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii ACICU] gi|215482062|ref|YP_002324244.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii AB307-0294] gi|239501976|ref|ZP_04661286.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii AB900] gi|260556905|ref|ZP_05829122.1| MraW methylase [Acinetobacter baumannii ATCC 19606] gi|332851366|ref|ZP_08433418.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii 6013150] gi|332868777|ref|ZP_08438400.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii 6013113] gi|332873764|ref|ZP_08441706.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii 6014059] gi|263433333|sp|B7GVN1|RSMH_ACIB3 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263433342|sp|B2I0K7|RSMH_ACIBC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263433359|sp|B0V8N7|RSMH_ACIBY RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263437330|sp|A3M9K5|RSMH_ACIBT RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|169147399|emb|CAM85260.1| S-adenosylmethionine methyltransferase [Acinetobacter baumannii AYE] gi|183211315|gb|ACC58713.1| predicted S-adenosylmethionine-dependent methyltransferase [Acinetobacter baumannii ACICU] gi|193078572|gb|ABO13599.2| S-adenosylmethionine methyltransferase [Acinetobacter baumannii ATCC 17978] gi|213987451|gb|ACJ57750.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii AB307-0294] gi|260409511|gb|EEX02812.1| MraW methylase [Acinetobacter baumannii ATCC 19606] gi|322509634|gb|ADX05088.1| S-adenosylmethionine methyltransferase [Acinetobacter baumannii 1656-2] gi|323519652|gb|ADX94033.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii TCDC-AB0715] gi|332730082|gb|EGJ61410.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii 6013150] gi|332733206|gb|EGJ64403.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii 6013113] gi|332737987|gb|EGJ68872.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii 6014059] Length = 307 Score = 355 bits (911), Expect = 6e-96, Method: Composition-based stats. Identities = 110/310 (35%), Positives = 172/310 (55%), Gaps = 16/310 (5%) Query: 20 HVPVLLEKVIA-LLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H+ VLL + + LL V +DATFG GG++R + V A D+DP A+ Sbjct: 3 HISVLLFETVESLLADRTTGVYIDATFGRGGHTRLLLSKLDENARVYAFDKDPQALEVA- 61 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F++ A+F+ +++ + + GV DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 62 AALAQEDPRFTIIHASFADIKEKMQEIGVQSVDGIMADLGVSSPQLDQAERGFSFMQDGP 121 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G++A++ + + +DL I+ GEE+ + RIA AI + TT L Sbjct: 122 LDMRMDNSKGLTAAEWLLEVEEEDLANIIYQYGEERYSRRIARAIKQA---GKLDTTAQL 178 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +++ + ++ HPATR+FQA+RI +N E++++ L A LK G L V+SFH Sbjct: 179 AEIVKTAHPKWEKHK-HPATRTFQAIRIAINKELDDIEVFLPQAVDLLKPKGRLSVISFH 237 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNA-HPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDRL+K+F S +P + I++ V ++E+V N RSRSA Sbjct: 238 SLEDRLIKQFIQKESTLAEDSGWGMPQQQVDTRRLKKISR--VRASEEEVKANPRSRSAW 295 Query: 311 LRAGMRTVER 320 LR R ++ Sbjct: 296 LRVAERLEQK 305 >gi|221632091|ref|YP_002521312.1| S-adenosyl-methyltransferase MraW [Thermomicrobium roseum DSM 5159] gi|262825878|sp|B9L274|RSMH_THERP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|221156426|gb|ACM05553.1| S-adenosyl-methyltransferase MraW [Thermomicrobium roseum DSM 5159] Length = 326 Score = 355 bits (911), Expect = 6e-96, Method: Composition-based stats. Identities = 126/307 (41%), Positives = 171/307 (55%), Gaps = 9/307 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H PVLL + L P G +DATFG GG+SR+ + V+A+D DP AV+ + Sbjct: 17 HEPVLLSAALTFLAPRDGGRYIDATFGGGGHSRAILEASAPSGQVLAIDADPAAVARARA 76 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 Y + F L G VDG++FDLG+SS Q+ RGFSFQ +GPL Sbjct: 77 LAERYPGRLLPCHGNFRDLARLAQSYGFVPVDGILFDLGLSSDQLADPARGFSFQLAGPL 136 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMR SG A+ +VN + ++L + GEE +A IA IV R P +TT L+ Sbjct: 137 DMRFDPTSGEPAAVIVNTWSAEELAELFWQYGEEPRAWAIAQTIVAERARQPIETTTQLA 196 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +L+ + V S+ RIHPATR FQALRI VN E+E LA GL A + L+ GG L+V++FHS Sbjct: 197 ALVAR-VAGSRRERIHPATRVFQALRIAVNQELEALAAGLAQAVELLRPGGRLVVIAFHS 255 Query: 253 LEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDRLVK+FF + + + H + +T + V P+ E++ N RSRSA+L Sbjct: 256 LEDRLVKQFFRREAAACLCPPGTPVCICGHRPRLRLLTPRPVRPSAEEITRNPRSRSARL 315 Query: 312 RAGMRTV 318 RA R Sbjct: 316 RAAERIA 322 >gi|104783461|ref|YP_609959.1| S-adenosyl-methyltransferase MraW [Pseudomonas entomophila L48] gi|122401960|sp|Q1I5B0|RSMH_PSEE4 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|95112448|emb|CAK17175.1| S-adenosylmethionine methyltransferase MraW [Pseudomonas entomophila L48] Length = 315 Score = 355 bits (911), Expect = 6e-96, Method: Composition-based stats. Identities = 113/308 (36%), Positives = 173/308 (56%), Gaps = 12/308 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 +H+ VLL++ + L LD TFG GG+SR ++ D+DP A++ GQ Sbjct: 8 NHITVLLDEAVEALALRADGCYLDGTFGRGGHSRLILSKLGPQGRLLGFDKDPQAIATGQ 67 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVP----DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +F + Q +F++L V V G++ DLGVSS Q+D +RGFSF G Sbjct: 68 A-LAAEDGRFVIVQRSFAELGAEVAGRDLAGKVSGILLDLGVSSPQLDDPERGFSFLNDG 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ + GISA++ + A V+++ R+ GEE+ A R+A A+V+RR+ PF T D Sbjct: 127 PLDMRMNPNQGISAAEFIATAPVEEIARVFKEYGEERFAGRMARAVVERREKQPFTRTAD 186 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ +++ + + +PATR+FQ LRI VNNE+ +L GL +A AL+ GG L V+SF Sbjct: 187 LAEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLETGLEAALDALEVGGRLAVISF 245 Query: 251 HSLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFNRRSRS 308 HSLEDR+VK F G+ + +P + + K ++ ++ N RSRS Sbjct: 246 HSLEDRIVKLFMRKLVKGEADNLPRNLPVQHKTFEPRIKLIGKAQFASEAELKANPRSRS 305 Query: 309 AKLRAGMR 316 A +R + Sbjct: 306 AVMRVAEK 313 >gi|330964049|gb|EGH64309.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv. actinidiae str. M302091] Length = 313 Score = 355 bits (911), Expect = 6e-96, Method: Composition-based stats. Identities = 113/307 (36%), Positives = 175/307 (57%), Gaps = 12/307 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H+ VLLE+ + L P LD TFG GG+SR ++ D+DP A++ GQ Sbjct: 7 HITVLLEEAVEALAVRPDGCYLDGTFGRGGHSRLILSHLGPDGRLLGFDKDPQAIATGQA 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F + Q +F++L + G V G++ DLGVSS Q+D +RGFSF GP Sbjct: 67 -LAAEDGRFVIVQRSFAELGSQAQELGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDGP 125 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G+SA++ + A +++ R+ GEE+ A R+A+A+V+RR+ PF+ T DL Sbjct: 126 LDMRMDPTRGVSAAEFIASAPAEEIARVFKEYGEERFAKRMANAVVQRREIQPFERTADL 185 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +++ + + +PATR+FQ LRI VNNE+ +L GL +A ++L+ GG L+V+SFH Sbjct: 186 AEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAAMESLEIGGRLVVISFH 244 Query: 252 SLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK F + G+ + +P + I K + + N RSRSA Sbjct: 245 SLEDRIVKLFMRKLAKGEADNMPRNLPIQYKAFEPKIKIHGKAQFASDVETKANPRSRSA 304 Query: 310 KLRAGMR 316 +R + Sbjct: 305 VMRVAEK 311 >gi|291300155|ref|YP_003511433.1| S-adenosyl-methyltransferase MraW [Stackebrandtia nassauensis DSM 44728] gi|290569375|gb|ADD42340.1| S-adenosyl-methyltransferase MraW [Stackebrandtia nassauensis DSM 44728] Length = 336 Score = 355 bits (911), Expect = 7e-96, Method: Composition-based stats. Identities = 122/327 (37%), Positives = 192/327 (58%), Gaps = 10/327 (3%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGSNV--IA 63 M + HVPV E+V LL P P V +DAT GAGG+S + + ++ I Sbjct: 1 MMTKYGAPDRAHVPVFAERVCQLLAPAFDRPDPVCVDATLGAGGHSLALLEAHPSLTVIG 60 Query: 64 LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDC 120 +DRDP A+ + + + ++F +A + +L + + + GVD G++FDLGVSSMQ+D Sbjct: 61 IDRDPDALELAGKRLARFGDRFRPARAVYDELDEVLDETGVDQISGILFDLGVSSMQLDV 120 Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGF++ + PLDMRM S G++A++VVN +DL+RIL I GEE+ A RIA +IV + Sbjct: 121 AERGFAYAQDAPLDMRMDQSQGMTAAEVVNSYAERDLSRILRIYGEERFAPRIAKSIVAQ 180 Query: 180 RQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R+ AP +++++L+ L++ V + + +P+ R+FQALRI VN E++ L L A A Sbjct: 181 RKRAPIESSRELADLVRDAVPAATRRRGGNPSKRTFQALRIEVNRELDVLRDALPRAIDA 240 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L G ++V+S+HSLEDR+VK+ R+ I + +TK P++ Sbjct: 241 LAPDGRIVVLSYHSLEDRIVKRELGERTKSSAPAGLPIDVPGTEPTLRWLTKGAQPPSEA 300 Query: 299 DVAFNRRSRSAKLRAGMRTVERSIEDD 325 ++A N R+ SAKLRA + R+ + D Sbjct: 301 EIAANPRAASAKLRAAQKLGGRNQDHD 327 >gi|213612818|ref|ZP_03370644.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 304 Score = 355 bits (911), Expect = 7e-96, Method: Composition-based stats. Identities = 120/308 (38%), Positives = 183/308 (59%), Gaps = 19/308 (6%) Query: 23 VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMR 79 VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ Q Sbjct: 1 VLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAQTI-- 58 Query: 80 DYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 +FS+ FS L DYV ++ +DG++ DLGVSS Q+D +RGFSF + GPLDM Sbjct: 59 -NDPRFSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFMRDGPLDM 117 Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM + G SA++ + +A D+ +L GEE+ A RIAHAIV+R + P T++L+ + Sbjct: 118 RMDPTRGQSAAEWLQRAEEADIAWVLKTFGEERFAKRIAHAIVERNREQPMTRTKELAEV 177 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 + K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L +GG L ++SFHSLE Sbjct: 178 VAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLASGGRLSIISFHSLE 236 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRRSRSA 309 DR+VK+F +S + + A +++ K ++P +++VA N R+RS+ Sbjct: 237 DRIVKRFMREQSRGPQVPAGLPMTEAQLKKLGGRELRALGK--LMPGEKEVAENPRARSS 294 Query: 310 KLRAGMRT 317 LR RT Sbjct: 295 VLRIAERT 302 >gi|170078284|ref|YP_001734922.1| S-adenosyl-methyltransferase [Synechococcus sp. PCC 7002] gi|262825754|sp|B1XP73|RSMH_SYNP2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|169885953|gb|ACA99666.1| S-adenosyl-methyltransferase [Synechococcus sp. PCC 7002] Length = 290 Score = 355 bits (911), Expect = 7e-96, Method: Composition-based stats. Identities = 111/301 (36%), Positives = 168/301 (55%), Gaps = 26/301 (8%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCGQE 76 H+ VL E+++A L P LD T G GG++ + +V +DRD A++ E Sbjct: 6 KHISVLKEELVAGLGVKPEGHYLDVTLGGGGHTELILQQYPDVRVTGVDRDSQAIAAASE 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 ++ + ++F ++ F + Q + DG++ DLGVSS+Q D GDRGFSF+ PLDMR Sbjct: 66 RLKSFGDRFRAVRSNFGEYQP--QGEKFDGIIADLGVSSVQFDQGDRGFSFRFDAPLDMR 123 Query: 137 MSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M ++A+D+VN K L + G+E+ + +IA IV +R P QTT++L ++ Sbjct: 124 MDQQQTLTAADIVNTYEEKALANLFYEYGDERLSRQIAKKIVMKR---PIQTTKELEEIV 180 Query: 196 QKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 T ++ +IHPATR FQALRI VN E++ L L +A + LK G L ++SFHSLE Sbjct: 181 FYTYHPKARKVKIHPATRVFQALRIAVNGELDALQYLLVNAPQWLKPQGRLGIISFHSLE 240 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 DRLVK F R +++ +TKK +V ++ ++ N R+RSAKLR Sbjct: 241 DRLVKNAFRQRD-----------------IWRILTKKPMVASETEINQNPRARSAKLRFA 283 Query: 315 M 315 Sbjct: 284 E 284 >gi|307710487|ref|ZP_07646924.1| S-adenosyl-methyltransferase MraW [Streptococcus mitis SK564] gi|307618750|gb|EFN97889.1| S-adenosyl-methyltransferase MraW [Streptococcus mitis SK564] Length = 299 Score = 355 bits (911), Expect = 7e-96, Method: Composition-based stats. Identities = 98/297 (32%), Positives = 159/297 (53%), Gaps = 10/297 (3%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDYKEQ--F 85 +L+ P + +DAT G G+S ++ A D+D A+ Q+ + Y E+ Sbjct: 1 MLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQKRLAPYIEKGMV 60 Query: 86 SLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-G 141 + + F LQ + + GV DG+ +DLGVSS Q+D +RGFS++K PLDMRM+ Sbjct: 61 TFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDAPLDMRMNQDAS 120 Query: 142 ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYF 201 ++A +VVN + DL RI GE+K + +IA I + R P +TT +L+ +I+ Sbjct: 121 LTAYEVVNNYDYHDLVRIFFKYGEDKFSKQIARKIEQARDLKPIETTTELAEIIKSAKPA 180 Query: 202 SK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKK 260 + + HPA + FQA+RI VN+E+ + ++ A L G + V++FHSLEDRL K+ Sbjct: 181 KELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVITFHSLEDRLTKQ 240 Query: 261 FFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 F S + + + +++K ++P+ E++ N RS SAKLR + Sbjct: 241 LFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAEELEANNRSHSAKLRVARKI 297 >gi|271502050|ref|YP_003335076.1| S-adenosyl-methyltransferase MraW [Dickeya dadantii Ech586] gi|270345605|gb|ACZ78370.1| S-adenosyl-methyltransferase MraW [Dickeya dadantii Ech586] Length = 313 Score = 355 bits (911), Expect = 7e-96, Method: Composition-based stats. Identities = 121/314 (38%), Positives = 177/314 (56%), Gaps = 19/314 (6%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72 +H VLL++ + LN + +D TFG GG+SR ++A+DRDP AV+ Sbjct: 3 ETFNHTTVLLDEAVNGLNIRSNGIYIDGTFGRGGHSRLILSHLGPEGRLLAIDRDPQAVA 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128 +FS+ FS+L DYV ++G +DG++ DLGVSS Q+D +RGFSF Sbjct: 63 VANTI---DDARFSIIHGPFSELADYVDERGLTGKIDGILLDLGVSSPQLDDPERGFSFM 119 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM + G SA++ + +A D+ +L GEE+ A RIA AIV+R + P Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLMKAEADDIAWVLKTFGEERFAKRIARAIVERNRIDPLTR 179 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T+ L+ LI + ++ HPATRSFQA+RI++N+E+EE+ + L A K L G L V Sbjct: 180 TKALAELIAAASPIREKHK-HPATRSFQAIRIYINSELEEIERALDGALKVLAPEGRLSV 238 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAF 302 +SFHSLEDR+VK+F S + + +SI K ++P ++VA Sbjct: 239 ISFHSLEDRIVKRFIRQHSRGPQVPAGLPLTEEQLRSQGGQTLKSIGK--MMPPDDEVAE 296 Query: 303 NRRSRSAKLRAGMR 316 N R+RS+ LR R Sbjct: 297 NPRARSSVLRFAER 310 >gi|332881743|ref|ZP_08449391.1| S-adenosyl-methyltransferase MraW [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332680382|gb|EGJ53331.1| S-adenosyl-methyltransferase MraW [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 302 Score = 355 bits (911), Expect = 8e-96, Method: Composition-based stats. Identities = 103/315 (32%), Positives = 171/315 (54%), Gaps = 21/315 (6%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALD 65 M A++ HVPVLL++ + L P + D TFG GG+SR+ ++ D Sbjct: 1 MEEAVY-----HVPVLLKECVDGLVVNPAGIYADVTFGGGGHSRAIVSRLDAAGHLYGFD 55 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGD 122 +D A + +F+ ++ F L++++ GV DG++ DLGVSS D + Sbjct: 56 QDADAEANIVA-----DGRFTFVRSNFRYLKNWMRYYGVEQLDGLLADLGVSSHHFDDAE 110 Query: 123 RGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF+ G LDMRM+ + ++A+DV+N + L I + GE K A ++A +VK R Sbjct: 111 RGFSFRFDGKLDMRMNQRARLTAADVLNDYAEERLADIFYLYGELKNARKLASWVVKARM 170 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 +TT++ +++ F ++ + FQALRI VN E++ L + L +A + L+ Sbjct: 171 HRRIETTEEFMEVVKPL--FERDREKKELAKVFQALRIEVNQEMDALKEMLTAAVELLRP 228 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 GG L+V+++HSLEDR+VK + + + ++ + P +++ KV+VP +E+ Sbjct: 229 GGRLVVLTYHSLEDRMVKNLVKTGNVEGKRIQDFYGNVDCP--LRAVHNKVIVPGEEEQR 286 Query: 302 FNRRSRSAKLRAGMR 316 N RSRSAKLR + Sbjct: 287 ANPRSRSAKLRIAEK 301 >gi|56750578|ref|YP_171279.1| S-adenosyl-methyltransferase MraW [Synechococcus elongatus PCC 6301] gi|81299784|ref|YP_399992.1| S-adenosyl-methyltransferase MraW [Synechococcus elongatus PCC 7942] gi|68565438|sp|Q5N4L0|RSMH_SYNP6 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|123557084|sp|Q31PL4|RSMH_SYNE7 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|56685537|dbj|BAD78759.1| hypothetical protein [Synechococcus elongatus PCC 6301] gi|81168665|gb|ABB57005.1| methyltransferase [Synechococcus elongatus PCC 7942] Length = 296 Score = 354 bits (910), Expect = 8e-96, Method: Composition-based stats. Identities = 117/317 (36%), Positives = 171/317 (53%), Gaps = 26/317 (8%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDR 66 ++ + + HV VL +++ L P G LDAT G GG+S N VI LDR Sbjct: 2 LADSSQPSSFHHVTVLQRELVEGLLPDRGGWFLDATLGGGGHSELLLSEWPNTQVIGLDR 61 Query: 67 DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126 DP A++ Q ++ Y ++ F+ Q D+ G++ DLGVSS Q+D +RGFS Sbjct: 62 DPAAIAASQTRLQLYSDRVQFQHVNFANYQP--GDRRFQGIMADLGVSSPQLDEAERGFS 119 Query: 127 FQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 F++ PLDMRM + ++A+ +VN+ + DL ++ GEE+ + RIA IV++R PF Sbjct: 120 FRQDAPLDMRMDPTAELTAAAIVNEWDETDLANLIYQYGEERLSRRIARRIVEQR---PF 176 Query: 186 QTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 + T +LS I V S + RIHPATR+FQALRI VN E++ L L A L GG Sbjct: 177 ERTLELSEAIAGAVPRSYRYGRIHPATRTFQALRIAVNGELDALQTFLDRAPDWLAPGGR 236 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 + ++SFHSLEDR++K IT+K ++P++ ++ N Sbjct: 237 IALISFHSLEDRIIKHALRGDD-----------------RLTVITRKPLLPSEAEIESNP 279 Query: 305 RSRSAKLRAGMRTVERS 321 RSRSAKLR R + S Sbjct: 280 RSRSAKLRIAERVLPES 296 >gi|258645236|ref|ZP_05732705.1| S-adenosyl-methyltransferase MraW [Dialister invisus DSM 15470] gi|260402586|gb|EEW96133.1| S-adenosyl-methyltransferase MraW [Dialister invisus DSM 15470] Length = 310 Score = 354 bits (910), Expect = 8e-96, Method: Composition-based stats. Identities = 104/307 (33%), Positives = 162/307 (52%), Gaps = 10/307 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQE 76 H VL ++++ + +D T G GG+S + +I +D+D A+ +E Sbjct: 5 HTTVLQNEMVSHVLTNTNGTYVDCTLGGGGHSLALAEGLSNLGCIIGVDQDGEAIEAAKE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +R + +F + FS + + + G VDG +FDLGVSS Q+D G RGFS+ +G L Sbjct: 65 RLRGAQCKFISVRDNFSNINGILKENGIEKVDGFIFDLGVSSHQLDDGARGFSYMNNGKL 124 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + ++A DV+N + L I+ GEE+ ASRI I + R P TT++L Sbjct: 125 DMRMDQRNSLTAYDVINTYTKEHLRNIIRDYGEERWASRIVDFIDRARMRRPISTTEELV 184 Query: 193 SLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+ + ++ + HPA R+FQA+RI VNNE+ L + + L GG L V++FH Sbjct: 185 HVIKAAIPSAARRDGPHPAKRTFQAIRIEVNNELGILRKAMEDCINHLNKGGRLGVITFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR++K F S + I H +S+ K + P+ ++V N R+RSA Sbjct: 245 SLEDRIIKNTFRDMSKDCICPSEIPICICNHRRQVRSV-GKAIRPSPQEVKENPRARSAV 303 Query: 311 LRAGMRT 317 LR + Sbjct: 304 LRVVEKV 310 >gi|269137987|ref|YP_003294687.1| S-adenosyl-methyltransferase MraW [Edwardsiella tarda EIB202] gi|267983647|gb|ACY83476.1| S-adenosyl-methyltransferase MraW [Edwardsiella tarda EIB202] gi|304558034|gb|ADM40698.1| S-adenosyl-methyltransferase MraW [Edwardsiella tarda FL6-60] Length = 313 Score = 354 bits (910), Expect = 8e-96, Method: Composition-based stats. Identities = 124/311 (39%), Positives = 184/311 (59%), Gaps = 19/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H VLL++ +A LN + +D TFG GG+SR +IA+DRDP A++ Sbjct: 7 HKTVLLDEAVAGLNLRSDGIYIDGTFGRGGHSRLILSQLGAEGRLIAIDRDPQAIAAAA- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +FS+ FS L DYV + G +DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 66 --QIDDPRFSIVHGPFSALADYVQEMGLSGRIDGILLDLGVSSPQLDDPERGFSFMRDGP 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G+SA+ + QA +D+ +L GEE+ A RIA AIV+R ++ P T++L Sbjct: 124 LDMRMDPSRGLSAAQWLMQAEEEDIAWVLKTFGEERFAKRIARAIVERNRTEPLTRTREL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++LI + F + ++ HPATRSFQA+RI++N+E++E+ + L A AL G L V+SFH Sbjct: 184 AALISEASPFKEKHK-HPATRSFQAIRIYINSELDEIERALEGALVALAPQGRLSVISFH 242 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNRRS 306 SLEDRLVK+F S + + + A +++ K+ +P + +VA N R+ Sbjct: 243 SLEDRLVKRFMRQYSRGPQVPKGLPLTEAQLQAQGGPQLKALGKR--MPGEREVADNPRA 300 Query: 307 RSAKLRAGMRT 317 RS+ LR R Sbjct: 301 RSSVLRVAERI 311 >gi|254491294|ref|ZP_05104474.1| S-adenosyl-methyltransferase MraW [Methylophaga thiooxidans DMS010] gi|224463423|gb|EEF79692.1| S-adenosyl-methyltransferase MraW [Methylophaga thiooxydans DMS010] Length = 312 Score = 354 bits (910), Expect = 8e-96, Method: Composition-based stats. Identities = 121/314 (38%), Positives = 182/314 (57%), Gaps = 10/314 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69 + + +H+PVLL + IA L+ LDATFG GG+SR+ + ++ LDRDP Sbjct: 1 MTESHSEHLPVLLNETIAALSVKADGKYLDATFGRGGHSRAILALLSDDGRLLGLDRDPQ 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDY----VPDKGVDGVVFDLGVSSMQIDCGDRGF 125 AV+ G++ + +F++ FS++ + +DG++ D+GVSS Q+D +RGF Sbjct: 61 AVATGKQ-LAQQDNRFAIEYCAFSEMATAAHARLWQNNIDGILMDIGVSSPQLDDAERGF 119 Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF K GPLDMRM+ + GISA++ + A + D+ ++ LGEE+ RIA AIV+ R P Sbjct: 120 SFSKDGPLDMRMNPNAGISAAEWLATAEMDDIAHVIKTLGEERYGKRIARAIVETRDENP 179 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 TT+ L+ L+ K + ++ HPATR+FQA+RIF+NNE+EEL L A L GG Sbjct: 180 ITTTKQLADLVDKASPSREKHK-HPATRTFQAIRIFINNELEELTLALEQALDVLAVGGR 238 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 L+V+SFHSLEDR+VK+FF + H + I K + ++ ++A N Sbjct: 239 LVVISFHSLEDRIVKRFFRDEARGDDFPAHFPVTVEQLNPRLKIIGKAIKASETELADNP 298 Query: 305 RSRSAKLRAGMRTV 318 R+RSA LR + Sbjct: 299 RARSAVLRVAEKLA 312 >gi|148360438|ref|YP_001251645.1| S-adenosylmethyl transferase MraW [Legionella pneumophila str. Corby] gi|263456280|sp|A5IFZ9|RSMH_LEGPC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|148282211|gb|ABQ56299.1| S-adenosylmethyl transferase MraW [Legionella pneumophila str. Corby] gi|307609707|emb|CBW99217.1| hypothetical protein LPW_09981 [Legionella pneumophila 130b] Length = 308 Score = 354 bits (910), Expect = 8e-96, Method: Composition-based stats. Identities = 115/311 (36%), Positives = 167/311 (53%), Gaps = 12/311 (3%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H VLL + I L + D TFG GG+SR + A+D+D AV Sbjct: 1 MAKHQSVLLHESIKGLAIKADGIYFDGTFGRGGHSREILNHLSDKGRLFAIDKDLDAVQY 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGV----DGVVFDLGVSSMQIDCGDRGFSFQK 129 ++ ++F +F +F+Q++++ GV DG++ DLGVSS Q+D +RGFSF Sbjct: 61 AKDYF-GLDKRFQIFHGSFAQIKEFASQAGVIGAVDGILLDLGVSSPQLDNPERGFSFML 119 Query: 130 SGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM I+A++ VN+A V +L + GEE+ A RIA AIV R+ P TT Sbjct: 120 QGPLDMRMDLTQSINAANFVNEAEVNELAHVFRAYGEERFAGRIAKAIVDARKLKPITTT 179 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ ++++ + ++ HPATR FQA+RI VN E+ +L+ L L G L V+ Sbjct: 180 LELAEIVKEANPKWEKHK-HPATRVFQAIRIHVNQELTDLSNCLEQCLDVLGPRGRLAVI 238 Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 SFHSLEDR+VK+F + G V I F+ + K V P ++ N RSR Sbjct: 239 SFHSLEDRIVKQFMRDKEQGNRPPVEVPIKYEELKTNFKRV-GKAVKPQSSEIKENVRSR 297 Query: 308 SAKLRAGMRTV 318 SA LR G + Sbjct: 298 SAVLRIGEKLA 308 >gi|152979594|ref|YP_001345223.1| S-adenosyl-methyltransferase MraW [Actinobacillus succinogenes 130Z] gi|263446597|sp|A6VQP1|RSMH_ACTSZ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|150841317|gb|ABR75288.1| S-adenosyl-methyltransferase MraW [Actinobacillus succinogenes 130Z] Length = 321 Score = 354 bits (910), Expect = 9e-96, Method: Composition-based stats. Identities = 122/324 (37%), Positives = 174/324 (53%), Gaps = 20/324 (6%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 MS + +H VLL + + L + +D TFG GG+SR +IA+D Sbjct: 1 MSERNTFSHPEHTTVLLHEAVQGLALKEQGIYIDGTFGRGGHSRLILSRLSPNGRLIAVD 60 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCG 121 RDP A+ ++ +F + +FS + + G VDG++ DLGVSS Q+D Sbjct: 61 RDPLAIVEAEKI---QDPRFQIEHNSFSAIPEICAKYGLTGKVDGILLDLGVSSPQLDDA 117 Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 RGFSF K GPLDMRM + G+SAS+ + Q + +DL +L GEE+ A RIA AIV Sbjct: 118 QRGFSFMKDGPLDMRMDTTKGLSASEWLAQVSERDLAWVLKTFGEERFAKRIAAAIVNYN 177 Query: 181 QSAP------FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234 +SA T L+ LI V F K+ HPATR+FQA+RIF+N+E++EL L+S Sbjct: 178 KSAVEKNEEILNRTLQLAELISSAVPF-KDKHKHPATRTFQAIRIFLNSELDELESVLQS 236 Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI--TKKV 292 A L G L V+SFHSLEDR+VK F +S + + +++ K Sbjct: 237 ALTVLAPQGRLSVISFHSLEDRMVKHFMRKQSRGEDIPKGLPLREEQIQRNRTLKTIGKA 296 Query: 293 VVPTQEDVAFNRRSRSAKLRAGMR 316 + P++ ++A N RSRSA LR + Sbjct: 297 IQPSEREIAVNPRSRSAVLRIAEK 320 >gi|260591737|ref|ZP_05857195.1| S-adenosyl-methyltransferase MraW [Prevotella veroralis F0319] gi|260536021|gb|EEX18638.1| S-adenosyl-methyltransferase MraW [Prevotella veroralis F0319] Length = 326 Score = 354 bits (910), Expect = 9e-96, Method: Composition-based stats. Identities = 110/306 (35%), Positives = 171/306 (55%), Gaps = 13/306 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPFAVSCGQE 76 HVPVLL I LN P + +D TFG GG+SR K G ++ + D+D A + Sbjct: 21 HVPVLLNDSIEGLNIHPNGIYVDVTFGGGGHSREILSRLKKGCHLYSFDQDADAEQNVSK 80 Query: 77 --TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSG 131 + ++F+ ++ F L++++ +D G++ DLGVSS D RGFSF+ Sbjct: 81 MGLSEEQIDRFTFIRSNFRYLKNWMRYYSIDHIDGLLADLGVSSHHFDDETRGFSFRFEA 140 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ +G +A+D++N+ + + + IL + GE KQ+ RIA AIVK R+ F+TT+D Sbjct: 141 PLDMRMNKRAGRTAADILNEYDEEQIADILYLYGEIKQSRRIAAAIVKAREKRTFKTTKD 200 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L S+++ ++ + + FQALRI VN+E++ L + L A + L GG L V+++ Sbjct: 201 LLSIVEPFFLHAREKK--DMAKMFQALRIEVNHEMDALREMLLGATELLAPGGRLSVITY 258 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDR+VK S + + + P F+ I KV+ + + N RSRSAK Sbjct: 259 HSLEDRMVKNIMKSGNVEGKVKQDFYGRRETP--FRLINNKVITASNAEQELNPRSRSAK 316 Query: 311 LRAGMR 316 LR + Sbjct: 317 LRIAEK 322 >gi|308185651|ref|YP_003929782.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Pantoea vagans C9-1] gi|308056161|gb|ADO08333.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Pantoea vagans C9-1] Length = 313 Score = 354 bits (910), Expect = 9e-96, Method: Composition-based stats. Identities = 121/317 (38%), Positives = 177/317 (55%), Gaps = 21/317 (6%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAV 71 H VLL++ + LN + +D TFG GG+SR +IA+DRDP A+ Sbjct: 2 QENFKHTTVLLDEAVNGLNIREDGIYIDGTFGRGGHSRLILSQLGEKGRLIAIDRDPQAI 61 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSF 127 + E +FS+ FS L +YV ++ +DG++ DLGVSS Q+D +RGFSF Sbjct: 62 AAAAEI---TDPRFSIIHGPFSALAEYVAERDLVGKIDGILLDLGVSSPQLDDAERGFSF 118 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + GPLDMRM S G SA++ + A D+ +L GEE+ + RIA AIV+R + P Sbjct: 119 MRDGPLDMRMDPSRGHSAAEWLLHAEEADIAFVLKTYGEERFSKRIARAIVERNREQPMT 178 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T++L+ +I + K+ HPATRSFQA+RI++N+E+EE+ L+ A + L G L Sbjct: 179 RTRELAEVISVAMPV-KDKFKHPATRSFQAIRIWINSELEEIDIALKGAVEVLAPQGRLS 237 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHP------AVFQSITKKVVVPTQEDV 300 V+SFHSLEDRLVK+F +S + V IP H + + K + P +V Sbjct: 238 VISFHSLEDRLVKRFMRDQS-RGPQVPAGIPMTEHQLRALGGRELKLLGK--MSPGDAEV 294 Query: 301 AFNRRSRSAKLRAGMRT 317 + N R+RS+ LR +T Sbjct: 295 SENPRARSSVLRIAEKT 311 >gi|296532828|ref|ZP_06895500.1| S-adenosyl-methyltransferase MraW [Roseomonas cervicalis ATCC 49957] gi|296266841|gb|EFH12794.1| S-adenosyl-methyltransferase MraW [Roseomonas cervicalis ATCC 49957] Length = 311 Score = 354 bits (910), Expect = 1e-95, Method: Composition-based stats. Identities = 125/308 (40%), Positives = 182/308 (59%), Gaps = 9/308 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSNVIALDRDPFAVSCGQ 75 + H+PV+L +V+ L P G +D TFG GGY+R+ + + A DRDP A++ GQ Sbjct: 1 MSGHLPVMLAEVLDNLAPRAGGAYVDGTFGGGGYARAILGRAACTLHAFDRDPDAIARGQ 60 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + + +L + F ++++ + ++GV DGVV DLGVSS Q+D +RGFSF+ GP Sbjct: 61 ALLAESAGRLTLIERRFGEMREALAERGVTTVDGVVLDLGVSSFQLDQAERGFSFRFDGP 120 Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 LDMRM +G SA+D+VN +L IL LGEE+ + RIA +V R+ AP +TT L Sbjct: 121 LDMRMEKAGPSAADLVNTLPEAELADILWQLGEERHSRRIARTLVAARREAPIETTGRLR 180 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 SLI V + I ATRSFQALR+ VN+E+ E+ +GL +A L GG L+VV+FHS Sbjct: 181 SLI-HAVMPRDPSGIDSATRSFQALRLKVNDELGEVERGLEAAASLLAPGGRLVVVAFHS 239 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPS----NAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 LEDR+VK+F +G+ PS F+ + + P ++A N R+RS Sbjct: 240 LEDRIVKRFMQQAAGRGPGASRHDPSALLGGGQKPRFRLVANNALRPGAAELAANPRARS 299 Query: 309 AKLRAGMR 316 A+LR + Sbjct: 300 ARLRTLEK 307 >gi|149377270|ref|ZP_01895017.1| S-adenosyl-methyltransferase MraW [Marinobacter algicola DG893] gi|149358458|gb|EDM46933.1| S-adenosyl-methyltransferase MraW [Marinobacter algicola DG893] Length = 326 Score = 354 bits (910), Expect = 1e-95, Method: Composition-based stats. Identities = 122/321 (38%), Positives = 180/321 (56%), Gaps = 12/321 (3%) Query: 9 MSSAIHHTIG---DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVI 62 M++ H H VLL+ + LL P V +D TFG GG+SR G ++ Sbjct: 1 MTAGREHEPAGQYRHRSVLLDSAVDLLVNDPDGVYVDGTFGRGGHSRLILGRLGQGGKLL 60 Query: 63 ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQID 119 +D+DP A+ ++ + +F F +F++L +G V+GV+ DLGVSS Q+D Sbjct: 61 GIDKDPDAIQVARD-LSASDARFQPFHGSFAELGAAAEAQGWMKVNGVLLDLGVSSPQLD 119 Query: 120 CGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178 RGFSF + GPLDMRM SA+ + +A+ KD+ ++ GEEK + RIA +V+ Sbjct: 120 DAARGFSFMRDGPLDMRMDPGQAPSAAQWLAEADEKDIANVIWRYGEEKFSRRIARLVVE 179 Query: 179 RRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 RR+ AP +TT+ L+SL+ + V K HPATR+FQA+RIF+N E+E+L GL +A + Sbjct: 180 RRKEAPLETTRQLASLVSEAVP-KKEKHKHPATRTFQAIRIFINRELEDLELGLNAAVEK 238 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L GG L+V+SFHSLEDRLVK+F + + + + A + K E Sbjct: 239 LMPGGRLVVISFHSLEDRLVKRFMRDLARGPRLPKGVPVTAEQEASAFRLIGKANKADTE 298 Query: 299 DVAFNRRSRSAKLRAGMRTVE 319 +V+ N R+RSA +R R E Sbjct: 299 EVSDNVRARSAVMRVLERIPE 319 >gi|300722051|ref|YP_003711331.1| S-adenosyl-dependent methyl transferase [Xenorhabdus nematophila ATCC 19061] gi|297628548|emb|CBJ89120.1| S-adenosyl-dependent methyl transferase [Xenorhabdus nematophila ATCC 19061] Length = 314 Score = 354 bits (910), Expect = 1e-95, Method: Composition-based stats. Identities = 121/320 (37%), Positives = 180/320 (56%), Gaps = 19/320 (5%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPF 69 + ++ H VLL++ + LN + +D TFG GG+SR ++A+DRDP Sbjct: 1 MANSHFKHTSVLLDEAVNGLNIQEDGIYIDGTFGRGGHSRLILSKLGPNGRLMAIDRDPQ 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGF 125 A+ + E+FS+ FS+L YV D ++GV+ DLGVSS Q+D +RGF Sbjct: 61 AIEASK---AITDERFSITHGPFSELATYVEDADLVGKINGVLLDLGVSSPQLDDPERGF 117 Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF + GPLDMRM + G SAS+ + +A +D+ +L GEE+ A RIA AIV R Q P Sbjct: 118 SFMRDGPLDMRMDPTRGQSASEWLMKAEEEDIAWVLKTFGEERFAKRIARAIVARSQEQP 177 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 T++L+ LI + + ++ HPATRSFQA+RI++N+E+EE+ + L A + L G Sbjct: 178 MTRTRELAELIAQASPIKEKHK-HPATRSFQAIRIYINSELEEIERALDGALRVLAPQGR 236 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQED 299 L V+SFHSLEDR+VK+F S + + A + I K + P+ ++ Sbjct: 237 LSVISFHSLEDRIVKRFIRQNSQGPQVPAGLPLTEAQLKAMGGRSLKFIGK--MKPSGDE 294 Query: 300 VAFNRRSRSAKLRAGMRTVE 319 VA N R+RS+ LR + E Sbjct: 295 VATNPRARSSVLRFAEKADE 314 >gi|260550822|ref|ZP_05825029.1| S-adenosylmethionine-dependent methyltransferase [Acinetobacter sp. RUH2624] gi|260406132|gb|EEW99617.1| S-adenosylmethionine-dependent methyltransferase [Acinetobacter sp. RUH2624] Length = 307 Score = 354 bits (909), Expect = 1e-95, Method: Composition-based stats. Identities = 110/310 (35%), Positives = 171/310 (55%), Gaps = 16/310 (5%) Query: 20 HVPVLLEKVIA-LLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H+ VLL + + LL V +DATFG GG++R + V A D+DP A+ Sbjct: 3 HISVLLFETVESLLADRTTGVYIDATFGRGGHTRLLLSKLDENARVYAFDKDPQALEVAG 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F++ A+F+ +++ + + GV DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 63 A-LAQEDPRFTIIHASFADIKEKMQEIGVQSVDGIMADLGVSSPQLDQAERGFSFMQDGP 121 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G++A++ + + + L I+ GEE+ + RIA AI + TT L Sbjct: 122 LDMRMDNSKGLTAAEWLLEIEEEQLANIIYQYGEERYSRRIAKAIKQA---GKLDTTAQL 178 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + L++ + ++ HPATR+FQA+RI +N E++++ L A LK G L V+SFH Sbjct: 179 AELVKTAHPKWEKHK-HPATRTFQAIRIAINKELDDIEVFLPQAVDLLKPKGRLSVISFH 237 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNA-HPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDRL+K+F S +P + I++ V ++E+V N RSRSA Sbjct: 238 SLEDRLIKQFIQKESTLAEDSGWGMPQQQVDTRRLKKISR--VRASEEEVKANPRSRSAW 295 Query: 311 LRAGMRTVER 320 LR R ++ Sbjct: 296 LRVAERLEQK 305 >gi|182677677|ref|YP_001831823.1| S-adenosyl-methyltransferase MraW [Beijerinckia indica subsp. indica ATCC 9039] gi|263445947|sp|B2IGF2|RSMH_BEII9 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|182633560|gb|ACB94334.1| S-adenosyl-methyltransferase MraW [Beijerinckia indica subsp. indica ATCC 9039] Length = 355 Score = 354 bits (909), Expect = 1e-95, Method: Composition-based stats. Identities = 152/328 (46%), Positives = 204/328 (62%), Gaps = 8/328 (2%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSNVIALDRDPFAVSCGQE 76 HVPVL E+V+A L+ G LDATFGAGGY+R+ + ++V+A+DRDP A++ G+ Sbjct: 17 ARHVPVLREEVVAALDCKKGGFYLDATFGAGGYTRALLAEPETHVLAIDRDPEAIAAGRA 76 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + L FS L D +G+ DG+VFD+GVSSMQ+D +RGFSF+ GPL Sbjct: 77 LEAESAGRLILAHGRFSTLADIAAAEGIPAFDGIVFDIGVSSMQLDQPERGFSFRGEGPL 136 Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 DMRM G SA+D+VN A+ + L I GEE+ + RIA AIV R PF TT+ L+ Sbjct: 137 DMRMESRGPSAADLVNTADEQRLADIFYYFGEERASRRIARAIVTDRAHTPFTTTRQLAE 196 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 LI + K IHPATR FQALRI VN E+ EL + L +AE L+ GG L+VV+FHSL Sbjct: 197 LIARVNP-GKPGDIHPATRVFQALRIAVNEELLELVRALAAAEALLREGGRLVVVTFHSL 255 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 EDR+VK+F A+RSG+ AV +P P F K+ V+P+ E++A N R+RSAKL Sbjct: 256 EDRIVKQFLAARSGRGQAVSRPLPGEPALAPPTFILPGKQPVLPSPEEIAVNPRARSAKL 315 Query: 312 RAGMRTVERSIEDDS-FVHLPRLPTLSQ 338 R G+RT + +S + L LP S Sbjct: 316 RFGLRTAAPARGLESGLLPLATLPETSH 343 >gi|307132591|ref|YP_003884607.1| 16S rRNA m(4)C1402 methyltransferase [Dickeya dadantii 3937] gi|306530120|gb|ADN00051.1| 16S rRNA m(4)C1402 methyltransferase [Dickeya dadantii 3937] Length = 313 Score = 354 bits (909), Expect = 1e-95, Method: Composition-based stats. Identities = 120/312 (38%), Positives = 175/312 (56%), Gaps = 15/312 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72 H VLL++ + LN + +D TFG GG+SR ++A+DRDP AV+ Sbjct: 3 ETFKHTTVLLDEAVNGLNIRSNGIYIDGTFGRGGHSRLILSRLGPEGRLLAIDRDPQAVA 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128 +FS+ FS+L +YV ++G +DG++ DLGVSS Q+D +RGFSF Sbjct: 63 VANTI---DDARFSIIHGPFSELAEYVDERGLTGKIDGILLDLGVSSPQLDDPERGFSFM 119 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM + G SA++ + +A +D+ +L GEE+ A RIA AIV+R + P Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLMKAEAEDIAWVLKTFGEERFAKRIARAIVERNRVEPLTR 179 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T+ L+ LI + ++ HPATRSFQA+RI++N+E+EE+ + L A + L G L V Sbjct: 180 TKALAELIAAASPIREKHK-HPATRSFQAIRIYINSELEEIERALDGALQVLAPEGRLSV 238 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNR 304 +SFHSLEDR+VK+F S + + T K V +P E+VA N Sbjct: 239 ISFHSLEDRIVKRFIRQHSRGPQVPAGLPLTEEQLRSRGGQTLKAVGKMMPPDEEVADNP 298 Query: 305 RSRSAKLRAGMR 316 R+RS+ LR R Sbjct: 299 RARSSVLRFAER 310 >gi|300173578|ref|YP_003772744.1| S-adenosyl-methyltransferase MraW [Leuconostoc gasicomitatum LMG 18811] gi|299887957|emb|CBL91925.1| S-adenosyl-methyltransferase MraW [Leuconostoc gasicomitatum LMG 18811] Length = 313 Score = 354 bits (909), Expect = 1e-95, Method: Composition-based stats. Identities = 109/311 (35%), Positives = 167/311 (53%), Gaps = 10/311 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSC 73 T +HV VLL++ +ALLN P +DAT G GG++ K N + + D+D A+ Sbjct: 2 TEFEHVTVLLKEAVALLNVKPDGNYVDATLGGGGHTGEILKQLDNGILYSFDQDDTAIKY 61 Query: 74 GQE--TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQ 128 +E + L F L + + + GV DGV++DLGVSS+Q D G RGFS+ Sbjct: 62 NEEQYAAEIASGKLVLIHQNFRTLTEALAELGVTQVDGVLYDLGVSSVQFDDGQRGFSYN 121 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 LDMRM ++A ++N+ + D+ RIL GE++ +IA I R++ T Sbjct: 122 YDADLDMRMDQRQTLTAKTIINEWSFNDILRILSRYGEDRFPKQIARKIEHHRENGVINT 181 Query: 188 TQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T +L +I++ + ++ HPA R+FQALRI VN+E+ L L + L GG + Sbjct: 182 TFELVDIIKEAIPAPARRKGGHPAKRTFQALRIAVNDELGALEDSLTQSLDLLAPGGRIS 241 Query: 247 VVSFHSLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 ++F SLEDRLVK+ F + S + V + A + +T+K ++PT ++ N R Sbjct: 242 AITFQSLEDRLVKQMFREKTSTPELPVGLPVLPGQFEADYTLLTRKPILPTNDETQTNHR 301 Query: 306 SRSAKLRAGMR 316 S+SAKLR R Sbjct: 302 SQSAKLRGIER 312 >gi|254525262|ref|ZP_05137317.1| S-adenosyl-methyltransferase MraW [Stenotrophomonas sp. SKA14] gi|219722853|gb|EED41378.1| S-adenosyl-methyltransferase MraW [Stenotrophomonas sp. SKA14] Length = 322 Score = 354 bits (909), Expect = 1e-95, Method: Composition-based stats. Identities = 119/310 (38%), Positives = 178/310 (57%), Gaps = 8/310 (2%) Query: 12 AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDP 68 + + H+PVL +V+ L LD TFG GG++R ++ +D+DP Sbjct: 11 PVSQSPAVHLPVLYTQVLEGLRVIENGRYLDGTFGRGGHARGVLTQLGPEGRLLVMDKDP 70 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDY-VPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 A++ + + S+F+ +F+QL + G+DGV+FDLGVSS Q+D +RGFSF Sbjct: 71 EAIAVAERDFAP-DPRVSIFRGSFAQLLQWDATADGLDGVLFDLGVSSPQLDVAERGFSF 129 Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 K GPLDMRM SG SA+ +N+ +++ +L GEE+Q+ RIA AIV RR+ PF Sbjct: 130 GKDGPLDMRMDPDSGESAAQWINRVEDREIADVLWTYGEERQSRRIARAIVARREKQPFT 189 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T +L+ L+ + K ++IHPATRSFQA+RI +N E+ +L GL +A + LK GG L Sbjct: 190 RTAELAELVASVMPRGK-DKIHPATRSFQAIRIHINRELADLEAGLDAAVERLKPGGRLA 248 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 ++SFHSLEDR+VK++ + A R + + I + T E++A N R+ Sbjct: 249 IISFHSLEDRIVKQYMNRLAKAPPANRRLPEAEVFVPTLDLI-GGAIKATDEELAANPRA 307 Query: 307 RSAKLRAGMR 316 RSA LR + Sbjct: 308 RSAVLRVAQK 317 >gi|263506479|sp|B0U504|RSMH_XYLFM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 313 Score = 354 bits (909), Expect = 1e-95, Method: Composition-based stats. Identities = 114/305 (37%), Positives = 171/305 (56%), Gaps = 10/305 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HVPVL + + L LD TFG GG++R + G ++ +D+DP A++ E Sbjct: 3 HVPVLYTQAMEGLRVVENGTYLDGTFGRGGHARGVLQQLGPGGRLLVMDKDPEAIAMA-E 61 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + + + +F+ L + +DGV+FDLGVSS Q+D +RGFSF K GPLDMR Sbjct: 62 RVFSCDPRVVIRHGSFALLAQLAAPQSLDGVLFDLGVSSPQLDVPERGFSFAKDGPLDMR 121 Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M G SA+ + + + +++ +L GEEKQ+ RIA AIV R + P T L+ LI Sbjct: 122 MDPEMGESAAQWLARVSEREIAEVLWTYGEEKQSRRIARAIVAYRANQPLLRTVQLAELI 181 Query: 196 QKTVYFSK----NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +K +RIHPATRSFQ +RI VN E+ +L GL +A AL+ GG L+V+SFH Sbjct: 182 ASVMLRTKSGACKSRIHPATRSFQGIRIHVNRELVDLEVGLEAALAALRPGGRLVVISFH 241 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+VK+F + + R + + + I + + ++++ N R+RSA L Sbjct: 242 SLEDRIVKQFISRHAKVPPTNRRLPEVQTFVPLLRMIGR-AIKADEDELEVNPRARSAVL 300 Query: 312 RAGMR 316 R + Sbjct: 301 RVAEK 305 >gi|239907971|ref|YP_002954712.1| S-adenosyl-methyltransferase MraW [Desulfovibrio magneticus RS-1] gi|263446299|sp|C4XK86|RSMH_DESMR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|239797837|dbj|BAH76826.1| S-adenosyl-methyltransferase MraW [Desulfovibrio magneticus RS-1] Length = 324 Score = 354 bits (909), Expect = 1e-95, Method: Composition-based stats. Identities = 123/308 (39%), Positives = 169/308 (54%), Gaps = 11/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H PVLL +VI LL PG ILDAT G GG+SR + V+ LDRD A+S Sbjct: 7 HKPVLLREVIELLGIRPGMKILDATVGLGGHSRGMLEAAGGEGQVLGLDRDREALSEAGR 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + Y ++ L + S+ + + G VD + D G+SS+Q+D +RGF F GPL Sbjct: 67 WLAPYGDRVRLVRTRSSRFPAVLAEAGWEKVDAALLDAGMSSLQLDDPERGFGFLHDGPL 126 Query: 134 DMRMSCS--GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 DMRM G +A +VN A+ L I+ GE+ QA RIA AIV R+ TT L Sbjct: 127 DMRMGAEDGGETAEGLVNLASYARLCEIIREYGEDPQAGRIARAIVSVREKEAITTTARL 186 Query: 192 SSLIQKTVYFSKNN--RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 + ++ + R HPATR+FQALR+ VN E+ EL L++ L GG + V+S Sbjct: 187 AEVVWQAYPAKWRATARQHPATRTFQALRMAVNEELAELEAFLKAIPDHLAPGGRVAVIS 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDRLVK+ F + + + R ++ H A + +TKK V+ +E+V N R+RS Sbjct: 247 FHSLEDRLVKRAFRAEATDCICPREQVVCVCGHRARLRILTKKPVMAGEEEVRDNSRARS 306 Query: 309 AKLRAGMR 316 AKLR R Sbjct: 307 AKLRVAER 314 >gi|302344204|ref|YP_003808733.1| S-adenosyl-methyltransferase MraW [Desulfarculus baarsii DSM 2075] gi|301640817|gb|ADK86139.1| S-adenosyl-methyltransferase MraW [Desulfarculus baarsii DSM 2075] Length = 316 Score = 354 bits (909), Expect = 1e-95, Method: Composition-based stats. Identities = 115/313 (36%), Positives = 174/313 (55%), Gaps = 10/313 (3%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73 H PVLL + + + P PG + +D T GAGG++ + + ++ LDRD A++ Sbjct: 2 TAGHRPVLLAETLRAMQPKPGGIYVDGTLGAGGHAAAILEACGPTGRLLGLDRDAQALAL 61 Query: 74 GQETMRDYK-EQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQK 129 + + + L QA+F ++ + GV DG++ DLGVSSMQ+D G RGFSF Sbjct: 62 ATANLAGFDQARLRLTQASFDEIGQCLSAWGVAACDGILLDLGVSSMQLDQGQRGFSFMH 121 Query: 130 SGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 GPLDMRM SG A+++V ++ LT I LGEE A R A A+++ R+ P +T Sbjct: 122 DGPLDMRMGQSGPGAAELVADSDQNRLTAIFRDLGEEPLARRYAQAVIEARRQGPIVSTG 181 Query: 190 DLSSLIQKTVYF--SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 L+++I+ + + ++IHPATR FQALR+ VN+E+ L + L A L GG+L V Sbjct: 182 RLAAVIEASTPAAVRRKSKIHPATRVFQALRLAVNDELGRLERFLAGAPAWLNPGGVLAV 241 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 +S+HSLEDR VK+ + + + +F + K + P+ +VA N RS Sbjct: 242 ISYHSLEDRRVKRSLRAAANPCTCPPDLPRCVCGRRPLFDLPSHKAITPSAVEVAQNPRS 301 Query: 307 RSAKLRAGMRTVE 319 RSA+LR +RT Sbjct: 302 RSARLRVAVRTEA 314 >gi|15837392|ref|NP_298080.1| S-adenosyl-methyltransferase MraW [Xylella fastidiosa 9a5c] gi|20139246|sp|Q9PF88|RSMH_XYLFA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|9105686|gb|AAF83600.1|AE003919_11 conserved hypothetical protein [Xylella fastidiosa 9a5c] Length = 313 Score = 354 bits (909), Expect = 1e-95, Method: Composition-based stats. Identities = 114/305 (37%), Positives = 171/305 (56%), Gaps = 10/305 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HVPVL + + L LD TFG GG++R ++ G ++ +D+DP A++ E Sbjct: 3 HVPVLYTQAMEGLRVVENGTYLDGTFGRGGHARGVLQLLGPGGRLLVMDKDPEAIAMA-E 61 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + + +F+ L + +DGV+FDLGVSS Q+D +RGFSF K GPLDMR Sbjct: 62 RAFSCDPRVVIRHGSFALLAQLAAPQSLDGVLFDLGVSSPQLDVPERGFSFVKDGPLDMR 121 Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M G SA+ + + + +++ +L GEEKQ+ RIA AIV R + P T L+ LI Sbjct: 122 MDPEMGESAAQWLARVSEREIADVLWTYGEEKQSRRIARAIVAYRANQPLLRTVQLAELI 181 Query: 196 QKTVYFSK----NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +K +RIHPATRSFQ +RI VN E+ +L GL +A AL+ GG L+V+SFH Sbjct: 182 ASVMLRTKSGACKSRIHPATRSFQGIRIHVNRELVDLEVGLEAALAALRPGGRLVVISFH 241 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+VK+F + + R + + + I + + ++++ N R+RSA L Sbjct: 242 SLEDRIVKQFISRHAKVPPTNRRLPEVQTFVPLLRMIGR-AIKADEDELEVNPRARSAVL 300 Query: 312 RAGMR 316 R + Sbjct: 301 RVAEK 305 >gi|313667806|ref|YP_004048090.1| s-adenosyl-l-methionine-dependent methyltransferase MraW [Neisseria lactamica ST-640] gi|313005268|emb|CBN86701.1| s-adenosyl-l-methionine-dependent methyltransferase MraW (ec 2.1.1.-) [Neisseria lactamica 020-06] Length = 319 Score = 354 bits (908), Expect = 1e-95, Method: Composition-based stats. Identities = 121/324 (37%), Positives = 172/324 (53%), Gaps = 13/324 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 MS ++ H+ VLL + + L V +D TFG GG+SR ++ D Sbjct: 1 MSETENY---RHITVLLHEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLVVFD 57 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGD 122 +DP AV+ +E + ++ S+ F+ Q + D G VDG +FDLGVSS QID Sbjct: 58 KDPRAVAAAEE-LARSDKRVSVVHGGFASFQTALDDLGIGDVDGALFDLGVSSPQIDDAA 116 Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF+ PLDMRM + G+SA++ + A+ +DL ++ GEE+ + +IA AIV +R Sbjct: 117 RGFSFRFDAPLDMRMDTTRGMSAAEWIASASEQDLHEVIKNYGEERFSRQIARAIVAQRA 176 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 P TT+ L+ L + V + + PATR+FQA+RIF+N E+EE+ L LK Sbjct: 177 ENPIDTTRKLAQLAAQNVRTRECGQ-DPATRTFQAVRIFINRELEEVEAVLPQVMCRLKQ 235 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDV 300 GG L V++FHSLEDR+VK+F S R A P I K + P +V Sbjct: 236 GGRLAVIAFHSLEDRIVKQFVGKYSRHAPLPRWAAVREADLPEPPLKIVGKALKPGGAEV 295 Query: 301 AFNRRSRSAKLRAGMRTVERSIED 324 A N R+RSA LR RT + Sbjct: 296 AANPRARSAVLRVAERTAGPIPAE 319 >gi|329964563|ref|ZP_08301617.1| S-adenosyl-methyltransferase MraW [Bacteroides fluxus YIT 12057] gi|328524963|gb|EGF52015.1| S-adenosyl-methyltransferase MraW [Bacteroides fluxus YIT 12057] Length = 319 Score = 354 bits (908), Expect = 1e-95, Method: Composition-based stats. Identities = 104/305 (34%), Positives = 159/305 (52%), Gaps = 16/305 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H+PVLL + +N P +D TFG GG+S+ G ++ D+D A E Sbjct: 18 HIPVLLMPSVDGMNIRPDGTYVDVTFGGGGHSKEILSRLGDGGRLLGFDQDEDA-----E 72 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 F ++ F L +++ G VD ++ DLGVSS D +RGFSF+ G L Sbjct: 73 RNIVNDPHFIFVRSNFRYLHNFLRYHGIGQVDAILADLGVSSHHFDDSERGFSFRFEGAL 132 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +G +A+D+VN + + L I + GE K + ++A IVK R T + Sbjct: 133 DMRMNKRAGTTAADIVNAYDEERLADIFYLYGELKNSRKLASVIVKARALQKISTIGEFL 192 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +++ F + + FQALRI VN E+E L + L +A +ALK GG L V+++HS Sbjct: 193 DIVKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLYAATEALKPGGRLAVITYHS 250 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK + + + A + + P F+ + KV+VP + ++ N RSRSAKLR Sbjct: 251 LEDRIVKNVMKTGNIEGKAEKDFYGNVRAP--FRLVNNKVIVPDESEIERNPRSRSAKLR 308 Query: 313 AGMRT 317 + Sbjct: 309 IAEKV 313 >gi|304396555|ref|ZP_07378436.1| S-adenosyl-methyltransferase MraW [Pantoea sp. aB] gi|304356064|gb|EFM20430.1| S-adenosyl-methyltransferase MraW [Pantoea sp. aB] Length = 313 Score = 354 bits (908), Expect = 1e-95, Method: Composition-based stats. Identities = 122/317 (38%), Positives = 177/317 (55%), Gaps = 21/317 (6%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAV 71 H VLL++ + LN + +D TFG GG+SR +IA+DRDP A+ Sbjct: 2 QENFKHTTVLLDEAVNGLNIREDGIYIDGTFGRGGHSRLILSQLGEKGKLIAIDRDPQAI 61 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSF 127 + E +FS+ FS L +YV ++ +DG++ DLGVSS Q+D +RGFSF Sbjct: 62 AAAAEI---TDPRFSIIHGPFSALAEYVSERDLVGKIDGILLDLGVSSPQLDDAERGFSF 118 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + GPLDMRM S G SA++ + A D+ +L GEE+ A RIA AIV+R + P Sbjct: 119 MRDGPLDMRMDPSRGHSAAEWLLHAEEADIAFVLKTYGEERFAKRIARAIVERNREQPMT 178 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T++L+ +I + K+ HPATRSFQA+RI++N+E+EE+ L+ A + L G L Sbjct: 179 RTRELAEVISIAMPV-KDKFKHPATRSFQAIRIWINSELEEIDIALKGAVQVLAPQGRLS 237 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHP------AVFQSITKKVVVPTQEDV 300 V+SFHSLEDRLVK+F +S + V IP H + + K + P +V Sbjct: 238 VISFHSLEDRLVKRFMRDQS-RGPQVPAGIPMTEHQLRALGGRELKLLGK--MSPGDAEV 294 Query: 301 AFNRRSRSAKLRAGMRT 317 + N R+RS+ LR +T Sbjct: 295 SENPRARSSVLRIAEKT 311 >gi|145635580|ref|ZP_01791278.1| S-adenosyl-methyltransferase [Haemophilus influenzae PittAA] gi|229844915|ref|ZP_04465053.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae 6P18H1] gi|145267142|gb|EDK07148.1| S-adenosyl-methyltransferase [Haemophilus influenzae PittAA] gi|229812296|gb|EEP47987.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae 6P18H1] Length = 320 Score = 354 bits (908), Expect = 1e-95, Method: Composition-based stats. Identities = 122/324 (37%), Positives = 174/324 (53%), Gaps = 19/324 (5%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDR 66 M+S + +H+ VLL + + L + +D TFG GG+SR +IA+DR Sbjct: 1 MNSENSFSSSEHITVLLHEAVNGLALKENGIYIDGTFGRGGHSRFILSQLSNGRLIAVDR 60 Query: 67 DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGD 122 DP A++ + +F + +FS + + +DG++ DLGVSS Q+D + Sbjct: 61 DPRAIAEAHKI---QDSRFQIEHNSFSHIPEICDKLNLVGKIDGILLDLGVSSPQLDEAE 117 Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF K GPLDMRM + G+SA + + Q +++DLT +L GEE+ A RIA AIV + Sbjct: 118 RGFSFMKDGPLDMRMDTTQGLSAEEWLKQVSIEDLTWVLKTFGEERFAKRIATAIVDFNK 177 Query: 182 SAP------FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 SA T L+ LI + V F K+ HPATRSFQA+RIF+N+E++EL L SA Sbjct: 178 SAVKNGTEFLSRTSQLAELISQAVPF-KDKHKHPATRSFQAIRIFINSELDELESLLNSA 236 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS--ITKKVV 293 L G L ++SFHSLEDR+VK F +S + + Q I K + Sbjct: 237 LDMLAPEGRLSIISFHSLEDRMVKHFMKKQSKGEDIPKGLPLREDQIQRNQKLRIIGKAI 296 Query: 294 VPTQEDVAFNRRSRSAKLRAGMRT 317 P+ ++ N RSRSA LR R Sbjct: 297 QPSDAEIQANPRSRSAILRVAERI 320 >gi|269120594|ref|YP_003308771.1| S-adenosyl-methyltransferase MraW [Sebaldella termitidis ATCC 33386] gi|268614472|gb|ACZ08840.1| S-adenosyl-methyltransferase MraW [Sebaldella termitidis ATCC 33386] Length = 308 Score = 354 bits (908), Expect = 1e-95, Method: Composition-based stats. Identities = 106/305 (34%), Positives = 173/305 (56%), Gaps = 10/305 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H PVL ++VI + V LD T G G+++ + S VIA+D+D A+ + Sbjct: 4 HKPVLFDEVIENIVTNKEGVYLDCTLGGAGHTQGILENTSEKGVVIAIDQDDDAIEFAGK 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + +YKE+ +F+ F L + G V G++ D+GVSS Q+D +RGFS++ L Sbjct: 64 KLENYKERIKIFKDNFKNLDTVLYMAGYEKVSGILMDIGVSSYQLDDPERGFSYKYEAKL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ + ISA +V+N+ + +++ IL GEE ++ RIA I + R+ +TT +L+ Sbjct: 124 DMRMNKNAKISAYEVINEFSEQEIADILYKYGEEPKSRRIARKITEARKEKKIETTTELA 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++ + + K+ + HPA R+FQA+R++VN E+E L + L A + L+ G L+V++FHS Sbjct: 184 DIVIRAI--GKSMKRHPAKRTFQAVRMYVNQELEVLEEALEKAVELLEDRGRLLVITFHS 241 Query: 253 LEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK F + I ++ + ITKK +V + ++ N R+ SAKL Sbjct: 242 LEDRIVKNKFREFEKPCKCPPNIPICVCGKESLGKVITKKPIVAGELELNDNSRAHSAKL 301 Query: 312 RAGMR 316 R R Sbjct: 302 RVFER 306 >gi|294635001|ref|ZP_06713518.1| S-adenosyl-methyltransferase MraW [Edwardsiella tarda ATCC 23685] gi|291091600|gb|EFE24161.1| S-adenosyl-methyltransferase MraW [Edwardsiella tarda ATCC 23685] Length = 314 Score = 354 bits (908), Expect = 1e-95, Method: Composition-based stats. Identities = 125/313 (39%), Positives = 185/313 (59%), Gaps = 20/313 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H VLL++ +A LN + +D TFG GG+SR +IA+DRDP A++ Sbjct: 7 HKTVLLDEAVAGLNLRSDGIYIDGTFGRGGHSRLILSQLGAEGRLIAIDRDPQAIAAAA- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +FS+ FS L +YV + G +DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 66 --QINDARFSIVHGPFSALAEYVEELGLVGRIDGILLDLGVSSPQLDDPERGFSFMRDGP 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTTQD 190 LDMRM S G+SA+D + QA +D+ +L GEE+ A RIA AIV+R R AP T++ Sbjct: 124 LDMRMDPSRGLSAADWLMQAEEEDIAWVLKTFGEERFAKRIARAIVERNRTEAPLTRTRE 183 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L++LI + F + ++ HPATRSFQA+RI++N+E++E+ + L A L G L V+SF Sbjct: 184 LAALISEASPFKEKHK-HPATRSFQAIRIYINSELDEIERALEGALAVLAPAGRLSVISF 242 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNRR 305 HSLEDRLVK+F S + + + A +++ K+ +P +++VA N R Sbjct: 243 HSLEDRLVKRFIRQYSRGPQVPKGLPLTEAQLQAQGGPQLKALGKR--MPGEQEVANNPR 300 Query: 306 SRSAKLRAGMRTV 318 +RS+ LR R Sbjct: 301 ARSSVLRVAERIA 313 >gi|296110609|ref|YP_003620990.1| cell division protein MraW [Leuconostoc kimchii IMSNU 11154] gi|295832140|gb|ADG40021.1| cell division protein MraW [Leuconostoc kimchii IMSNU 11154] Length = 313 Score = 354 bits (908), Expect = 2e-95, Method: Composition-based stats. Identities = 109/311 (35%), Positives = 166/311 (53%), Gaps = 10/311 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73 T +HV VLL + +ALLN P + +DAT G GG++ K + + D+D A+ Sbjct: 2 TEFEHVTVLLHEAVALLNIKPDGLYVDATLGGGGHTGEILKQLTSGTLYSFDQDDLAIRY 61 Query: 74 GQETMRD--YKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQ 128 +E D + L F L + ++GV DG+++DLGVSS+Q D G RGFS+ Sbjct: 62 NREQFADDIQAGKLVLIHQNFRTLTSALAERGVTQVDGIIYDLGVSSVQFDDGQRGFSYN 121 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 LDMRM ++A +VN + +L RIL GE++ +IA I R++ P T Sbjct: 122 YDADLDMRMDQRQNLTAKIIVNDWSFHELLRILSRYGEDRFPKQIARKIESHREAQPINT 181 Query: 188 TQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T +L +I++ + ++ HPA R+FQALRI VN+E+ L L A L G + Sbjct: 182 TFELVDIIKEAIPAPARRKGGHPAKRTFQALRIAVNDELGALEDSLTQAIALLAPSGRIS 241 Query: 247 VVSFHSLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 ++F SLEDRLVK+ F + S + V + A + +T+K ++P++ ++ N R Sbjct: 242 AITFQSLEDRLVKQMFREKTSTPELPVGLPVLPGQFEADYTLLTRKPILPSEHEMTINHR 301 Query: 306 SRSAKLRAGMR 316 S SAKLR R Sbjct: 302 SESAKLRGIER 312 >gi|284053843|ref|ZP_06384053.1| S-adenosyl-methyltransferase MraW [Arthrospira platensis str. Paraca] Length = 312 Score = 354 bits (908), Expect = 2e-95, Method: Composition-based stats. Identities = 118/311 (37%), Positives = 168/311 (54%), Gaps = 30/311 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCG--- 74 H+PVL ++I L G LDAT G GG+++ + NV A+DRD A++ Sbjct: 19 HIPVLGRELIEGLAVQEGGHYLDATVGGGGHTKMIFQGAPNVRVTAIDRDLEAIAAAKSM 78 Query: 75 -QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +TM + ++ + FSQ DG++ DLGV+S Q+D RGFSF+ GPL Sbjct: 79 LMDTMGNCGDRLQFWHGNFSQYPS--SPSQFDGIIADLGVNSHQLDTPGRGFSFRHCGPL 136 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +SA++++N + K L I GEE+ + RIA IV++R PFQTT+ L+ Sbjct: 137 DMRMNPQDPLSAAEIINTWDEKQLADIFYTYGEERLSRRIARQIVQKR---PFQTTEQLA 193 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 I V + RIHPATR FQALRI VN E+ L L +A LK GG + ++SFH Sbjct: 194 GAIANCVPSKYRYGRIHPATRVFQALRIAVNGELSALETFLETAPTWLKPGGRIGIISFH 253 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR VK F H + + +TKK + P ++++ N R+RSAKL Sbjct: 254 SLEDRPVKHGFR-----------------HHPLLKVLTKKPITPQPDEISQNPRARSAKL 296 Query: 312 RAGMRTVERSI 322 R R ++ Sbjct: 297 RLAQRNTNETL 307 >gi|284039278|ref|YP_003389208.1| S-adenosyl-methyltransferase MraW [Spirosoma linguale DSM 74] gi|283818571|gb|ADB40409.1| S-adenosyl-methyltransferase MraW [Spirosoma linguale DSM 74] Length = 301 Score = 354 bits (908), Expect = 2e-95, Method: Composition-based stats. Identities = 114/303 (37%), Positives = 161/303 (53%), Gaps = 13/303 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77 H PVLL+ I LN PG +D TFG GG+SR G + D+D A + Q Sbjct: 5 HEPVLLQACIDGLNLQPGGTYVDITFGGGGHSREILNQLEGGKLFGFDQDADARANAQ-- 62 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + + + F ++ Y+ VDG++ DLG+SS QID +RGFS + LD Sbjct: 63 -AIGDSRLTFVASNFRNIKRYLRLYKAEQVDGILADLGISSHQIDTPERGFSTRFDADLD 121 Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM+ + +A VVN+ +L RILG+ GE A A A+V R + P +T DL + Sbjct: 122 MRMNQNADKTARQVVNEYPEAELHRILGMYGEITNARTAAAALVSARSNRPLKTVNDLKA 181 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 +Q+ K N+ + FQALRI VN E++ L + L LK GG L+V+S+HSL Sbjct: 182 ALQRLAPRGKENK--YFAQVFQALRIEVNEELQALEEFLEQVPDILKPGGRLVVMSYHSL 239 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 EDRLVK F + + + ++ P QSIT+K V T E++A N R+RSAKLR Sbjct: 240 EDRLVKNFINKGKFQGEVEKDLFGNDLKP--LQSITRKPVEATPEEIARNPRARSAKLRI 297 Query: 314 GMR 316 + Sbjct: 298 AEK 300 >gi|331016726|gb|EGH96782.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 313 Score = 354 bits (908), Expect = 2e-95, Method: Composition-based stats. Identities = 112/307 (36%), Positives = 174/307 (56%), Gaps = 12/307 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H+ VLLE+ + L LD TFG GG+SR ++ D+DP A++ GQ Sbjct: 7 HITVLLEEAVEALAVRADGCYLDGTFGRGGHSRLILNHLGPDGRLLGFDKDPQAIATGQA 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F + Q +F++L + G V G++ DLGVSS Q+D +RGFSF GP Sbjct: 67 -LAAEDGRFVIVQRSFAELGSQAQELGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDGP 125 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G+SA++ + A +++ R+ GEE+ A R+A+A+V+RR+ PF+ T DL Sbjct: 126 LDMRMDPTRGVSAAEFIASAPAEEIARVFKEYGEERFAKRMANAVVQRREIQPFERTADL 185 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +++ + + +PATR+FQ LRI VNNE+ +L GL +A ++L+ GG L+V+SFH Sbjct: 186 AEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAAMESLEVGGRLVVISFH 244 Query: 252 SLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK F + G+ + +P + I K + + N RSRSA Sbjct: 245 SLEDRIVKLFMRKLAKGEADNMPRNLPIQYKAFEPKIKIHGKAQFASDVETKANPRSRSA 304 Query: 310 KLRAGMR 316 +R + Sbjct: 305 VMRVAEK 311 >gi|294664073|ref|ZP_06729474.1| S-adenosyl-methyltransferase MraW [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292606158|gb|EFF49408.1| S-adenosyl-methyltransferase MraW [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 347 Score = 354 bits (908), Expect = 2e-95, Method: Composition-based stats. Identities = 119/309 (38%), Positives = 174/309 (56%), Gaps = 7/309 (2%) Query: 12 AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDP 68 + + HVPVL +V+ L LD TFG GG++R + G ++ +D+DP Sbjct: 10 PVSQSPAAHVPVLYTQVLDGLQVTENGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDP 69 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 A++ E + S+ + +F+ L V VDG++ DLGVSS Q+D RGFSF Sbjct: 70 DAIAVA-EHSFGGDARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLDVAGRGFSFG 128 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 K GPLDMRM SG SA++ + QA+ +++ +L GEE+Q+ RIA AIV RR P Sbjct: 129 KDGPLDMRMDPDSGQSAAEWLAQASDREIADVLWTYGEERQSRRIARAIVARRAEQPLLR 188 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T L+ LI + +++ HPATRSFQA+RI +N E+ +L GL +A ALK GG L V Sbjct: 189 TAQLADLIASVMPRG-DSKTHPATRSFQAIRIHINRELADLEAGLDAALGALKPGGRLAV 247 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +SFHSLEDR+VK+F A + + R + + A Q ++ + ++ N R+R Sbjct: 248 ISFHSLEDRIVKQFMARYAKAPPSNRRLPEAQPFVATLQLVS-GAIKADDAELHVNPRAR 306 Query: 308 SAKLRAGMR 316 SA LR + Sbjct: 307 SAVLRVAEK 315 >gi|301510055|ref|ZP_07235292.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii AB058] Length = 307 Score = 354 bits (908), Expect = 2e-95, Method: Composition-based stats. Identities = 110/310 (35%), Positives = 172/310 (55%), Gaps = 16/310 (5%) Query: 20 HVPVLLEKVIA-LLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H+ VLL + + LL V +DATFG GG++R + V A D+DP A+ Sbjct: 3 HISVLLFETVESLLADRTIGVYIDATFGRGGHTRLLLSKLDENARVYAFDKDPQALEVA- 61 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F++ A+F+ +++ + + GV DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 62 AALAQEDPRFTIIHASFADIKEKMQEIGVQSVDGIMADLGVSSPQLDQAERGFSFMQDGP 121 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G++A++ + + +DL I+ GEE+ + RIA AI + TT L Sbjct: 122 LDMRMDNSKGLTAAEWLLEVEEEDLANIIYQYGEERYSRRIARAIKQA---GKLDTTAQL 178 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +++ + ++ HPATR+FQA+RI +N E++++ L A LK G L V+SFH Sbjct: 179 AEIVKTAHPKWEKHK-HPATRTFQAIRIAINKELDDIEVFLPQAVDLLKPKGRLSVISFH 237 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNA-HPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDRL+K+F S +P + I++ V ++E+V N RSRSA Sbjct: 238 SLEDRLIKQFIQKESTLAEDSGWGMPQQQVDTRRLKKISR--VRASEEEVKANPRSRSAW 295 Query: 311 LRAGMRTVER 320 LR R ++ Sbjct: 296 LRVAERLEQK 305 >gi|320540413|ref|ZP_08040063.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Serratia symbiotica str. Tucson] gi|320029344|gb|EFW11373.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Serratia symbiotica str. Tucson] Length = 313 Score = 353 bits (907), Expect = 2e-95, Method: Composition-based stats. Identities = 117/311 (37%), Positives = 174/311 (55%), Gaps = 15/311 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H VLL++ + LN +D TFG GG+S ++A+DRDP A++ + Sbjct: 6 KHATVLLDEAVNGLNIRSNGTYIDGTFGRGGHSCLILSQLGPEGRLLAIDRDPQAIAAAK 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +F++ FS L DYV ++ +DGV+ DLGVSS Q+D +RGFSF + G Sbjct: 66 SI---DDPRFTIVHGPFSALSDYVRERELVGQIDGVLLDLGVSSPQLDDAERGFSFMRDG 122 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S G+SA++ + +A D+ +L GEE+ A RIA AIV+R + P T+ Sbjct: 123 PLDMRMDPSTGLSAAEWLMKAEADDIAWVLKTFGEERFAKRIACAIVERNRVEPMTRTKQ 182 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ LI + ++ HPATRSFQA+RI++N+E+EE+ L + L G L ++SF Sbjct: 183 LADLIAGASPIREKHK-HPATRSFQAIRIYINSELEEIECALNGTLEVLAPQGRLSIISF 241 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNRRSR 307 HSLEDR+VK+F S A + + T KV+ +P++ +VA N R+R Sbjct: 242 HSLEDRIVKRFIRHHSRGAQAPAGIPLTEEQLRSMGGRTLKVLGKMMPSEAEVAGNPRAR 301 Query: 308 SAKLRAGMRTV 318 S+ LR R + Sbjct: 302 SSVLRIAQRVL 312 >gi|319776629|ref|YP_004139117.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Haemophilus influenzae F3047] gi|329124142|ref|ZP_08252689.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Haemophilus aegyptius ATCC 11116] gi|317451220|emb|CBY87453.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Haemophilus influenzae F3047] gi|327467567|gb|EGF13065.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Haemophilus aegyptius ATCC 11116] Length = 321 Score = 353 bits (907), Expect = 2e-95, Method: Composition-based stats. Identities = 122/325 (37%), Positives = 174/325 (53%), Gaps = 20/325 (6%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M+S + +H+ VLL + + L + +D TFG GG+SR +IA+D Sbjct: 1 MNSENSFSSSEHITVLLHEAVNGLALKENGIYIDGTFGRGGHSRFILSQLSSNGRLIAVD 60 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCG 121 RDP A++ + +F + +FS + + +DG++ DLGVSS Q+D Sbjct: 61 RDPRAIAEAHKI---QDSRFQIEHNSFSHIPEICDKLNLVGKIDGILLDLGVSSPQLDEA 117 Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF K GPLDMRM + G+SA + + Q +++DLT +L GEE+ A RIA AIV Sbjct: 118 ERGFSFMKDGPLDMRMDTTQGLSAEEWLKQVSIEDLTWVLKTFGEERFAKRIATAIVDFN 177 Query: 181 QSAP------FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234 +SA T L+ LI + V F K+ HPATRSFQA+RIF+N+E++EL L S Sbjct: 178 KSAVKNGTEFLSRTSQLAELISQAVPF-KDKHKHPATRSFQAIRIFINSELDELESLLNS 236 Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS--ITKKV 292 A L G L ++SFHSLEDR+VK F +S + + Q I K Sbjct: 237 ALDMLAPEGRLSIISFHSLEDRMVKHFMKKQSKGEDIPKGLPLREDQIQRNQKLRIIGKA 296 Query: 293 VVPTQEDVAFNRRSRSAKLRAGMRT 317 + P+ ++ N RSRSA LR R Sbjct: 297 IQPSDAEIQANPRSRSAILRVAERI 321 >gi|59712816|ref|YP_205592.1| S-adenosyl-methyltransferase MraW [Vibrio fischeri ES114] gi|68565406|sp|Q5E2P2|RSMH_VIBF1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|59480917|gb|AAW86704.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Vibrio fischeri ES114] Length = 316 Score = 353 bits (907), Expect = 2e-95, Method: Composition-based stats. Identities = 117/312 (37%), Positives = 165/312 (52%), Gaps = 18/312 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 HV VLL + I L P + +D TFG GG+SR + ++DRDP A++ + Sbjct: 7 HVSVLLHESIDGLAIKPDGIYIDGTFGRGGHSRQILSQLGENGRLYSIDRDPQAIAEAKT 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +F++ FS L+ YV + +DGV+ DLGVSS Q+D +RGFSF K GP Sbjct: 67 I---TDPKFTIIHGPFSGLKQYVEELDLVGKIDGVLLDLGVSSPQLDDAERGFSFMKDGP 123 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---PFQTT 188 LDMRM SGI S + +A+V+D+T ++ GE+K A RIA IV ++ P T Sbjct: 124 LDMRMDPTSGIPVSQWLQEADVEDITWVIREFGEDKHAWRIAKGIVAYLENEENEPLTRT 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ LI + S + HPATR+FQA RI++N+E++E+ L+ A L G L V+ Sbjct: 184 SQLAKLISEVAPKSFKEKKHPATRAFQAFRIYINSELDEIDTALKGALDVLAPEGRLSVI 243 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVVVPTQEDVAFNR 304 SFHSLEDR+VK F S + + K + PT+ +V N Sbjct: 244 SFHSLEDRMVKHFIRKESKGPQVPHGLPLTEEQIKALGSAKMKPVGKAIKPTKNEVNENV 303 Query: 305 RSRSAKLRAGMR 316 RSRS+ LR R Sbjct: 304 RSRSSVLRIAER 315 >gi|301169870|emb|CBW29474.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Haemophilus influenzae 10810] gi|309973403|gb|ADO96604.1| 16S rRNA m(4)C1402 methyltranserfase [Haemophilus influenzae R2846] Length = 321 Score = 353 bits (907), Expect = 2e-95, Method: Composition-based stats. Identities = 122/325 (37%), Positives = 174/325 (53%), Gaps = 20/325 (6%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M+S + +H+ VLL + + L + +D TFG GG+SR +IA+D Sbjct: 1 MNSENSFSSSEHITVLLHEAVNGLALKENGIYIDGTFGRGGHSRFILSQLSSNGRLIAVD 60 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCG 121 RDP A++ + +F + +FS + + +DG++ DLGVSS Q+D Sbjct: 61 RDPRAIAEAHKI---QDSRFQIEHNSFSHIPEICDKLNLVGKIDGILLDLGVSSPQLDEA 117 Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF K GPLDMRM + G+SA + + Q +++DLT +L GEE+ A RIA AIV Sbjct: 118 ERGFSFMKDGPLDMRMDTTQGLSAEEWLKQVSIEDLTWVLKTFGEERFAKRIATAIVDFN 177 Query: 181 QSAP------FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234 +SA T L+ LI + V F K+ HPATRSFQA+RIF+N+E++EL L S Sbjct: 178 KSAVKNSTEFLSRTSQLAELISQAVPF-KDKHKHPATRSFQAIRIFINSELDELESLLNS 236 Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS--ITKKV 292 A L G L ++SFHSLEDR+VK F +S + + Q I K Sbjct: 237 ALDMLAPEGRLSIISFHSLEDRMVKHFMKKQSKGEDIPKGLPLREDQIQRNQKLRIIGKA 296 Query: 293 VVPTQEDVAFNRRSRSAKLRAGMRT 317 + P+ ++ N RSRSA LR R Sbjct: 297 IQPSDAEIQANPRSRSAILRVAERI 321 >gi|317484855|ref|ZP_07943747.1| MraW methylase [Bilophila wadsworthia 3_1_6] gi|316923901|gb|EFV45095.1| MraW methylase [Bilophila wadsworthia 3_1_6] Length = 355 Score = 353 bits (907), Expect = 2e-95, Method: Composition-based stats. Identities = 118/327 (36%), Positives = 178/327 (54%), Gaps = 13/327 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+ VLL + + L P G LD T G GG+S + + + LDRD A+ + Sbjct: 8 HISVLLNEAVDALAPKAGGRYLDGTVGMGGHSFAIMERTGGEGFLCGLDRDTQALELARI 67 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + ++ L +S+ + + G VDG + D+GVSS+QID +RGFSF GPL Sbjct: 68 RLAPFGDRVHLVHTRYSEFEAALDGIGWDAVDGALIDIGVSSLQIDSAERGFSFSSDGPL 127 Query: 134 DMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 DMRM + S +VN+A ++DL I+ GE+ QA RIA AIV+ R P +TT +L Sbjct: 128 DMRMDRDSEELPVSRLVNRAKLEDLKDIIERYGEDPQAGRIARAIVEARVRKPIETTGEL 187 Query: 192 SSLIQKTVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 ++L+++ + + HPATR+FQALR+ VN+EI EL + L + LK GG + V+S Sbjct: 188 AALVERAYPAAWRAKARNHPATRTFQALRMAVNDEIGELERFLDTILGRLKPGGRVAVIS 247 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK + + + +H + H +T K V P++ ++ N R+ S Sbjct: 248 FHSLEDRVVKHRMKAWAQGCICPKHIPVCVCHHAPEALLVTPKPVCPSERELMLNPRAGS 307 Query: 309 AKLRAGMRTV--ERSIEDDSFVHLPRL 333 AKLR + R ++DS RL Sbjct: 308 AKLRVAEKLDPHARKADEDSGEEAARL 334 >gi|294627718|ref|ZP_06706300.1| S-adenosyl-methyltransferase MraW [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292598070|gb|EFF42225.1| S-adenosyl-methyltransferase MraW [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 347 Score = 353 bits (907), Expect = 2e-95, Method: Composition-based stats. Identities = 119/309 (38%), Positives = 174/309 (56%), Gaps = 7/309 (2%) Query: 12 AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDP 68 + + HVPVL +V+ L LD TFG GG++R + G ++ +D+DP Sbjct: 10 PVSQSPAAHVPVLYTQVLDGLQVTENGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDP 69 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 A++ E + S+ + +F+ L V VDG++ DLGVSS Q+D RGFSF Sbjct: 70 DAIAVA-EHSFGGDARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLDVAGRGFSFG 128 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 K GPLDMRM SG SA++ + QA+ +++ +L GEE+Q+ RIA AIV RR P Sbjct: 129 KDGPLDMRMDPDSGQSAAEWLAQASDREIADVLWTYGEERQSRRIARAIVARRAEQPLLR 188 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T L+ LI + +++ HPATRSFQA+RI +N E+ +L GL +A ALK GG L V Sbjct: 189 TAQLADLIASVMPRG-DSKTHPATRSFQAIRIHINRELADLEAGLDAALGALKPGGRLAV 247 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +SFHSLEDR+VK+F A + + R + + A Q ++ + ++ N R+R Sbjct: 248 ISFHSLEDRIVKQFMARYAKAPPSNRRLPEAQPFVATLQLVS-GAIKADDAELHVNPRAR 306 Query: 308 SAKLRAGMR 316 SA LR + Sbjct: 307 SAVLRVAEK 315 >gi|213158956|ref|YP_002320954.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii AB0057] gi|301345409|ref|ZP_07226150.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii AB056] gi|301596009|ref|ZP_07241017.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii AB059] gi|263433709|sp|B7IAX1|RSMH_ACIB5 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|213058116|gb|ACJ43018.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii AB0057] Length = 307 Score = 353 bits (907), Expect = 2e-95, Method: Composition-based stats. Identities = 110/310 (35%), Positives = 171/310 (55%), Gaps = 16/310 (5%) Query: 20 HVPVLLEKVIA-LLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H+ VLL + + LL V +DATFG GG++R + V A D+DP A+ Sbjct: 3 HISVLLFETVESLLADRTTGVYIDATFGRGGHTRLLLSKLDENARVYAFDKDPQALEVA- 61 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F++ A+F+ +++ + + GV DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 62 AALAQEDPRFTIIHASFADIKEKMQEIGVQSVDGIMADLGVSSPQLDQAERGFSFMQDGP 121 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G++A + + + +DL I+ GEE+ + RIA AI + TT L Sbjct: 122 LDMRMDNSKGLTADEWLLEVEEEDLANIIYQYGEERYSRRIARAIKQA---GKLDTTAQL 178 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +++ + ++ HPATR+FQA+RI +N E++++ L A LK G L V+SFH Sbjct: 179 AEIVKTAHPKWEKHK-HPATRTFQAIRIAINKELDDIEVFLPQAVDLLKPKGRLSVISFH 237 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNA-HPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDRL+K+F S +P + I++ V ++E+V N RSRSA Sbjct: 238 SLEDRLIKQFIQKESTLAEDSGWGMPQQQVDTRRLKKISR--VRASEEEVKANPRSRSAW 295 Query: 311 LRAGMRTVER 320 LR R ++ Sbjct: 296 LRVAERLEQK 305 >gi|291571686|dbj|BAI93958.1| S-adenosyl-methyltransferase MraW [Arthrospira platensis NIES-39] Length = 312 Score = 353 bits (907), Expect = 2e-95, Method: Composition-based stats. Identities = 118/311 (37%), Positives = 168/311 (54%), Gaps = 30/311 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCG--- 74 H+PVL ++I L G LDAT G GG+++ + NV A+DRD A++ Sbjct: 19 HIPVLGRELIEGLAVQEGGHYLDATVGGGGHTKMIFQGAPNVRVTAIDRDLEAIAAAKSM 78 Query: 75 -QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +TM + ++ + FSQ DG++ DLGV+S Q+D RGFSF+ GPL Sbjct: 79 LMDTMGNCGDRLQFWHGNFSQYPS--SPSQFDGIIADLGVNSHQLDTPGRGFSFRHCGPL 136 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +SA++++N + K L I GEE+ + RIA IV++R PFQTT+ L+ Sbjct: 137 DMRMNPQDPLSAAEIINTWDEKQLADIFYTYGEERLSRRIARQIVEKR---PFQTTEQLA 193 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 I V + RIHPATR FQALRI VN E+ L L +A LK GG + ++SFH Sbjct: 194 GAIANCVPSKYRYGRIHPATRVFQALRIAVNGELSALETFLETAPTWLKPGGRIGIISFH 253 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR VK F H + + +TKK + P ++++ N R+RSAKL Sbjct: 254 SLEDRPVKHGFR-----------------HHPLLKVLTKKPITPQPDEISQNPRARSAKL 296 Query: 312 RAGMRTVERSI 322 R R ++ Sbjct: 297 RLAQRNTNETL 307 >gi|154706930|ref|YP_001425301.1| S-adenosyl-methyltransferase MraW [Coxiella burnetii Dugway 5J108-111] gi|263446157|sp|A9KET2|RSMH_COXBN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|154356216|gb|ABS77678.1| S-adenosyl-methyltransferase [Coxiella burnetii Dugway 5J108-111] Length = 307 Score = 353 bits (907), Expect = 2e-95, Method: Composition-based stats. Identities = 118/305 (38%), Positives = 179/305 (58%), Gaps = 11/305 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H PVL ++V+ L P + +D TFG GG+S + ++A+D+DP AV+ + Sbjct: 4 HKPVLFDEVMEGLAIRPDGIYVDGTFGRGGHSFGILQRLGPNGRLMAMDKDPDAVAVANK 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + +FS+ TF+ LQ V D+G V+G++ D+GVSS Q++ RGFSF K GP Sbjct: 64 ALFE-DARFSIVHETFANLQKAVRDRGWEGKVNGILLDIGVSSPQLEDAKRGFSFSKDGP 122 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ + A+ +NQA ++D+ R+L GEE+ A RIA AIV R+ P TQ+L Sbjct: 123 LDMRMNPKQSMDAASWINQAAMEDIRRVLWNYGEERFAKRIAQAIVNAREEKPITRTQEL 182 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 S ++ K + + HPATR+FQA+RIF+N E++EL + L + L GG L V+SFH Sbjct: 183 SDIVIKAYP-QRKIKKHPATRTFQAIRIFINRELDELRECLPQCLETLAVGGRLCVISFH 241 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDRLVK+F S + I + + + ++ PT+ ++ N R+RSA+L Sbjct: 242 SLEDRLVKRFIQKESRDHLPREIPILAKDIKHRLKPLGS-LIRPTEAEIKKNPRARSARL 300 Query: 312 RAGMR 316 R + Sbjct: 301 RIVEK 305 >gi|304413635|ref|ZP_07395079.1| S-adenosyl-dependent methyltransferase [Candidatus Regiella insecticola LSR1] gi|304283726|gb|EFL92120.1| S-adenosyl-dependent methyltransferase [Candidatus Regiella insecticola LSR1] Length = 313 Score = 353 bits (907), Expect = 2e-95, Method: Composition-based stats. Identities = 121/311 (38%), Positives = 174/311 (55%), Gaps = 15/311 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H VLLE+ + LN + +D TFG GG+SR +IA+DRDP AV + Sbjct: 6 KHESVLLEQAVHCLNLRDDGIYVDGTFGLGGHSRLILSRLGQQGRLIAIDRDPQAVEVAK 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +FS+ FS+L Y + +DGV+FDLGVSS Q+D RGFSF + G Sbjct: 66 SI---TDPRFSIIHGPFSELARYAQESDLIGRIDGVLFDLGVSSPQLDNPQRGFSFMRDG 122 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S G+SA+ + +A+ ++ +L GEE+ A R+A AIV+R Q P TQ+ Sbjct: 123 PLDMRMDPSRGLSAAQWLMKASADEIAWVLKTFGEERFAKRLARAIVERNQQQPMHRTQE 182 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ LI + + ++ HPATRSFQA+RI++N+E+EE+ + L ++ L G + V+SF Sbjct: 183 LADLIVNILPMREKHK-HPATRSFQAIRIYINSELEEITRALEASLSVLAPKGRISVISF 241 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNRRSR 307 HSLEDR+VK F +S M + + T ++P+ E+VA N R+R Sbjct: 242 HSLEDRIVKNFIRQQSRGPQIPVGMPLTETQLRLMGGANLKTMGKMMPSAEEVAENPRAR 301 Query: 308 SAKLRAGMRTV 318 SA LR R Sbjct: 302 SAVLRFAERIA 312 >gi|293610699|ref|ZP_06692999.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827043|gb|EFF85408.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 307 Score = 353 bits (907), Expect = 2e-95, Method: Composition-based stats. Identities = 110/310 (35%), Positives = 172/310 (55%), Gaps = 16/310 (5%) Query: 20 HVPVLLEKVIA-LLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H+ VLL + + LL V +DATFG GG++R + V A D+DP A+ Sbjct: 3 HISVLLFETVESLLADRTTGVYIDATFGRGGHTRLLLSKLDENARVYAFDKDPQALEVA- 61 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F++ A+F+ +++ + + GV DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 62 AALAQEDPRFTIIHASFADIKEKMQEIGVMSVDGIMADLGVSSPQLDQAERGFSFMQDGP 121 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G++A++ + + + L I+ GEE+ + RIA AI + TT L Sbjct: 122 LDMRMDNSKGLTAAEWLLEIEEEQLANIIYQYGEERYSRRIAKAIKQA---GKLDTTAQL 178 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + L++ + ++ HPATR+FQA+RI +N E++++ L A LK G L V+SFH Sbjct: 179 AELVKTAHPKWEKHK-HPATRTFQAIRIAINKELDDIEVFLPQAVDLLKPKGRLSVISFH 237 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNA-HPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDRL+K+F S + +P + I++ V ++E+V N RSRSA Sbjct: 238 SLEDRLIKQFIQKESTLAEDIGWGMPQQQVDTRRLKKISR--VRASEEEVKANPRSRSAW 295 Query: 311 LRAGMRTVER 320 LR R ++ Sbjct: 296 LRVAERLEQK 305 >gi|218437172|ref|YP_002375501.1| S-adenosyl-methyltransferase MraW [Cyanothece sp. PCC 7424] gi|263447401|sp|B7K9F0|RSMH_CYAP7 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|218169900|gb|ACK68633.1| S-adenosyl-methyltransferase MraW [Cyanothece sp. PCC 7424] Length = 299 Score = 353 bits (907), Expect = 2e-95, Method: Composition-based stats. Identities = 113/314 (35%), Positives = 173/314 (55%), Gaps = 28/314 (8%) Query: 8 TMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALD 65 MS+ ++ H+PVL +++I L+ PG LDAT G GG+SR + +V A+D Sbjct: 6 QMST-VNSLAFIHIPVLTQELIKGLDICPGGHYLDATVGGGGHSRQILETYGDVQVTAID 64 Query: 66 RDPFAVSCGQETMRDYK-EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRG 124 RD A++ + DY ++ + + F+ + DG++ DLGVSS Q+D +RG Sbjct: 65 RDEVAIAAATTNLADYNTDRLTFWTGNFADYDP--GNLKFDGIIADLGVSSPQLDSPERG 122 Query: 125 FSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 FSF+ PLDMRM +A+D++N + +L + GEE+ + +IA IVK+R Sbjct: 123 FSFRLDAPLDMRMDRRQSTTAADIINSYSEIELANLFYNYGEERLSRQIAKQIVKQR--- 179 Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 PF +T +L+ +I ++V + RIHPATR FQ LRI VN E++ L L + LK Sbjct: 180 PFFSTTELAEVISRSVPPKYRYGRIHPATRVFQGLRIAVNQELDSLESFLAKSPSWLKTN 239 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G++ ++SFHSLEDR+VK + + + +TKK ++P ++ A Sbjct: 240 GIIGIISFHSLEDRIVKHQLRAS-----------------PLLKVLTKKPIIPQSDEQAK 282 Query: 303 NRRSRSAKLRAGMR 316 N RSRSAKLR R Sbjct: 283 NPRSRSAKLRLAQR 296 >gi|297566101|ref|YP_003685073.1| S-adenosyl-methyltransferase MraW [Meiothermus silvanus DSM 9946] gi|296850550|gb|ADH63565.1| S-adenosyl-methyltransferase MraW [Meiothermus silvanus DSM 9946] Length = 294 Score = 353 bits (907), Expect = 2e-95, Method: Composition-based stats. Identities = 119/307 (38%), Positives = 175/307 (57%), Gaps = 24/307 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+ VL ++ + LN PG + +DAT G GG+++ + G V+ D+DP A+ + + Sbjct: 7 HISVLYDEALNYLNVKPGGLYVDATLGGGGHTQGILQRGGRVVGFDQDPAAIERARNLLL 66 Query: 80 D--YKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 Q +L +A F LQ + G VDGV+ DLGVSS D +RGFS++ GPLD Sbjct: 67 PGLSLGQLTLVEANFRDLQPKLHALGIERVDGVLADLGVSSFHFDDPERGFSYRLEGPLD 126 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRM G +A++VVN+ V++L RIL LGEE +A RIA I + R+ P +TT +L+ + Sbjct: 127 MRMGKEGQTAAEVVNELEVEELARILRELGEEPKAWRIARFIEEARERKPIETTTELAEI 186 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 +++ F HPA ++FQALRI+VN+E+ L + L +A L G L+V+SFHSLE Sbjct: 187 VRRATGF--RGAGHPARKTFQALRIYVNDELGALRELLEAAVNVLAPQGRLVVISFHSLE 244 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 DR+VK F + + +TKK + P +E+ N R+RSAKLRA Sbjct: 245 DRIVKHFLKN-----------------EPRLRVLTKKPLEPGEEEARENPRARSAKLRAA 287 Query: 315 MRTVERS 321 R E + Sbjct: 288 ERLREAA 294 >gi|330997819|ref|ZP_08321654.1| S-adenosyl-methyltransferase MraW [Paraprevotella xylaniphila YIT 11841] gi|329569707|gb|EGG51472.1| S-adenosyl-methyltransferase MraW [Paraprevotella xylaniphila YIT 11841] Length = 302 Score = 353 bits (907), Expect = 2e-95, Method: Composition-based stats. Identities = 104/315 (33%), Positives = 172/315 (54%), Gaps = 21/315 (6%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALD 65 M A++ HVPVLL++ + L P V D TFG GG+SR+ ++ + D Sbjct: 1 MEEAVY-----HVPVLLKECVDGLVVNPAGVYADVTFGGGGHSRAIVSRLDTAGHLYSFD 55 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGD 122 +D A + +F+ ++ F L++++ GV DG++ DLGVSS D + Sbjct: 56 QDEDAEANIVA-----DGRFTFVRSNFRYLKNWMRYYGVGELDGLLADLGVSSHHFDDAE 110 Query: 123 RGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF+ G LDMRM+ + ++A+DV+N + L I + GE K A ++A +VK R Sbjct: 111 RGFSFRFDGRLDMRMNQRAQLTAADVLNDYAEERLADIFYLYGELKNARKLASWVVKARM 170 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 +TT++ +++ F ++ + FQALRI VN E++ L + L +A + L+ Sbjct: 171 HRRIETTEEFMEVVKPL--FERDREKKELAKVFQALRIEVNQEMDALKEMLTAAVELLRP 228 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 GG L+V+++HSLEDR+VK + + + ++ + P +++ KV+VP +E+ Sbjct: 229 GGRLVVLTYHSLEDRMVKNLVKTGNVEGKRIQDFYGNVDCP--LRAVHNKVIVPGEEEQR 286 Query: 302 FNRRSRSAKLRAGMR 316 N RSRSAKLR + Sbjct: 287 ANPRSRSAKLRIAEK 301 >gi|309792354|ref|ZP_07686822.1| S-adenosyl-methyltransferase MraW [Oscillochloris trichoides DG6] gi|308225575|gb|EFO79335.1| S-adenosyl-methyltransferase MraW [Oscillochloris trichoides DG6] Length = 317 Score = 353 bits (907), Expect = 2e-95, Method: Composition-based stats. Identities = 125/307 (40%), Positives = 173/307 (56%), Gaps = 16/307 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H+ VL + V A LNP PG + LD T G GG++ + + +I +D DP A++ Q Sbjct: 16 HISVLAQPVQAALNPRPGGIYLDGTLGGGGHALAVLQAAQPDGRLIGIDADPAALAAAQA 75 Query: 77 TMRD---YKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130 M + F F + G+ DG++ DLGVSS Q+D +RGFSF Sbjct: 76 RMAAANIPASSYQFFHGRFGAMAQIARQAGITSCDGILLDLGVSSPQLDWAERGFSFSAD 135 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 GPLDMR+ + G +A+D+VN + + L I+ GEE+ + +IA IV+RR+ APF+ T Sbjct: 136 GPLDMRLDPTQGHTAADLVNTLDEQYLADIIFRYGEERGSRKIARLIVERRKHAPFERTA 195 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 DL++L+ + V RIHPATR+FQALRI VN E+E+L L A L +GG L V+S Sbjct: 196 DLAALVARAVGRGGRERIHPATRTFQALRIAVNTELEQLEIALPQAVDLLHSGGRLAVIS 255 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDR+VK F + SG P + ITKK + E++A N RSRSA Sbjct: 256 FHSLEDRIVKHFLRAESGYGGNANP------RPPRLRIITKKPLEADAEELAANPRSRSA 309 Query: 310 KLRAGMR 316 KLR + Sbjct: 310 KLRVAEK 316 >gi|145641287|ref|ZP_01796867.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae R3021] gi|145274124|gb|EDK13990.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae 22.4-21] Length = 321 Score = 353 bits (907), Expect = 2e-95, Method: Composition-based stats. Identities = 123/325 (37%), Positives = 175/325 (53%), Gaps = 20/325 (6%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 M+S + +H+ VLL + + L + +D TFG GG+SR S +IA+D Sbjct: 1 MNSENSFSSSEHITVLLHEAVNGLALKENGIYIDGTFGRGGHSRFILSQLSSNSRLIAVD 60 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCG 121 RDP A++ + +F + +FS + + +DG++ DLGVSS Q+D Sbjct: 61 RDPRAIAEAHKI---QDSRFQIEHNSFSHIPEICDKLNLVGKIDGILLDLGVSSPQLDEA 117 Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF K GPLDMRM + G+SA + + Q +++DLT +L GEE+ A RIA AIV Sbjct: 118 ERGFSFMKDGPLDMRMDTTQGLSAEEWLKQVSIEDLTWVLKTFGEERFAKRIATAIVDFN 177 Query: 181 QSAP------FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234 +SA T L+ LI + V F K+ HPATRSFQA+RIF+N+E++EL L S Sbjct: 178 KSAVKNGTEFLSRTSQLAELISQAVPF-KDKHKHPATRSFQAIRIFINSELDELESLLNS 236 Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS--ITKKV 292 A L G L ++SFHSLEDR+VK F +S + + Q I K Sbjct: 237 ALDMLAPEGRLSIISFHSLEDRMVKHFMKKQSKGEDIPKGLPLREDQIQRNQKLRIIGKA 296 Query: 293 VVPTQEDVAFNRRSRSAKLRAGMRT 317 + P+ ++ N RSRSA LR R Sbjct: 297 IQPSDAEIQANPRSRSAILRVAERI 321 >gi|28871551|ref|NP_794170.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv. tomato str. DC3000] gi|213966575|ref|ZP_03394726.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv. tomato T1] gi|301384710|ref|ZP_07233128.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv. tomato Max13] gi|302059802|ref|ZP_07251343.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv. tomato K40] gi|302131749|ref|ZP_07257739.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv. tomato NCPPB 1108] gi|38257958|sp|Q87WX7|RSMH_PSESM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|28854802|gb|AAO57865.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv. tomato str. DC3000] gi|213928425|gb|EEB61969.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv. tomato T1] Length = 313 Score = 353 bits (907), Expect = 2e-95, Method: Composition-based stats. Identities = 112/307 (36%), Positives = 174/307 (56%), Gaps = 12/307 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H+ VLLE+ + L LD TFG GG+SR ++ D+DP A++ GQ Sbjct: 7 HITVLLEEAVEALAVRADGCYLDGTFGRGGHSRLILNHLGPDGRLLGFDKDPQAIATGQA 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F + Q +F++L + G V G++ DLGVSS Q+D +RGFSF GP Sbjct: 67 -LAAEDGRFVIVQRSFAELGSQAQELGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDGP 125 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G+SA++ + A +++ R+ GEE+ A R+A+A+V+RR+ PF+ T DL Sbjct: 126 LDMRMDPTRGVSAAEFIASAPAEEIARVFKEYGEERFAKRMANAVVQRREIQPFERTADL 185 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +++ + + +PATR+FQ LRI VNNE+ +L GL +A ++L+ GG L+V+SFH Sbjct: 186 AEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAAMESLEVGGRLVVISFH 244 Query: 252 SLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK F + G+ + +P + I K + + N RSRSA Sbjct: 245 SLEDRIVKLFMRKLAKGEADNMPRNLPIQYKAFEPKIKIHGKAQFASDVETKANPRSRSA 304 Query: 310 KLRAGMR 316 +R + Sbjct: 305 VMRVAEK 311 >gi|170748783|ref|YP_001755043.1| S-adenosyl-methyltransferase MraW [Methylobacterium radiotolerans JCM 2831] gi|263456464|sp|B1LYT9|RSMH_METRJ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|170655305|gb|ACB24360.1| S-adenosyl-methyltransferase MraW [Methylobacterium radiotolerans JCM 2831] Length = 353 Score = 353 bits (907), Expect = 2e-95, Method: Composition-based stats. Identities = 136/313 (43%), Positives = 190/313 (60%), Gaps = 8/313 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQE 76 HVPVLL +V+ L G +D TFGAGGY+R+ V+A+DRDP A++ GQ Sbjct: 23 PHVPVLLAEVVEALGT-EGGTAVDGTFGAGGYTRALLAADPALQVVAIDRDPTAIAGGQA 81 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + + L F L + + G VD VV D+GVSSMQ+D +RGFSF+ GPL Sbjct: 82 LVAESGGRLRLLPGRFGDLDGLLAEAGIAQVDRVVLDIGVSSMQLDAPERGFSFRSDGPL 141 Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 DMRM+C G SA+D+VN+A+ L I+ GEE+++ +A I++ R+ +TT L+ Sbjct: 142 DMRMACDGPSAADLVNEADETVLADIIYHFGEERRSRAVARTILEARRRGRIETTAQLAE 201 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 L+ V + IHPATR+FQ LRI VN+E+ EL + L +AE+ L+ GG L VV+FHSL Sbjct: 202 LVAGVVRTEPGSHIHPATRTFQGLRIAVNDELGELVRALHAAERVLRPGGRLAVVTFHSL 261 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRSAKL 311 EDR+VK+FFA+RSG+ +P V F+ +TK V+P + + A N R+RSAKL Sbjct: 262 EDRIVKQFFAARSGRSAQGSRHLPGGPVETVRSFRPVTKGPVLPGEAETARNPRARSAKL 321 Query: 312 RAGMRTVERSIED 324 RA RT E Sbjct: 322 RAAERTESDVPEP 334 >gi|29653474|ref|NP_819166.1| S-adenosyl-methyltransferase [Coxiella burnetii RSA 493] gi|153207124|ref|ZP_01945903.1| S-adenosyl-methyltransferase MraW [Coxiella burnetii 'MSU Goat Q177'] gi|161830127|ref|YP_001596084.1| S-adenosyl-methyltransferase MraW [Coxiella burnetii RSA 331] gi|165918373|ref|ZP_02218459.1| S-adenosyl-methyltransferase MraW [Coxiella burnetii RSA 334] gi|212219401|ref|YP_002306188.1| S-adenosyl-methyltransferase MraW [Coxiella burnetii CbuK_Q154] gi|42559465|sp|Q83F35|RSMH_COXBU RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446160|sp|A9NA25|RSMH_COXBR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263447414|sp|B6J5L7|RSMH_COXB1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|29540736|gb|AAO89680.1| S-adenosyl-methyltransferase [Coxiella burnetii RSA 493] gi|120576785|gb|EAX33409.1| S-adenosyl-methyltransferase MraW [Coxiella burnetii 'MSU Goat Q177'] gi|161761994|gb|ABX77636.1| S-adenosyl-methyltransferase MraW [Coxiella burnetii RSA 331] gi|165917879|gb|EDR36483.1| S-adenosyl-methyltransferase MraW [Coxiella burnetii RSA 334] gi|212013663|gb|ACJ21043.1| S-adenosyl-methyltransferase [Coxiella burnetii CbuK_Q154] Length = 307 Score = 353 bits (906), Expect = 2e-95, Method: Composition-based stats. Identities = 118/305 (38%), Positives = 179/305 (58%), Gaps = 11/305 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H PVL ++V+ L P + +D TFG GG+S + ++A+D+DP AV+ + Sbjct: 4 HKPVLFDEVMEGLAIRPDGIYVDGTFGRGGHSFGILQRLGPNGRLMAMDKDPDAVAVANK 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + +FS+ TF+ LQ V D+G V+G++ D+GVSS Q++ RGFSF K GP Sbjct: 64 ALFE-DARFSIVHETFANLQKAVRDRGWEGKVNGILLDIGVSSPQLEDAKRGFSFSKDGP 122 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ + A+ +NQA ++D+ R+L GEE+ A RIA AIV R+ P TQ+L Sbjct: 123 LDMRMNPKQSMDAASWINQAAMEDIRRVLWNYGEERFAKRIAQAIVNAREEKPITRTQEL 182 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 S ++ K + + HPATR+FQA+RIF+N E++EL + L + L GG L V+SFH Sbjct: 183 SDIVIKAYP-QREIKKHPATRTFQAIRIFINRELDELRECLPQCLETLAVGGRLCVISFH 241 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDRLVK+F S + I + + + ++ PT+ ++ N R+RSA+L Sbjct: 242 SLEDRLVKRFIQKESRDHLPREIPILAKDIKHRLKPLGS-LIRPTEAEIKKNPRARSARL 300 Query: 312 RAGMR 316 R + Sbjct: 301 RIVEK 305 >gi|126663227|ref|ZP_01734225.1| S-adenosyl-methyltransferase MraW [Flavobacteria bacterium BAL38] gi|126624885|gb|EAZ95575.1| S-adenosyl-methyltransferase MraW [Flavobacteria bacterium BAL38] Length = 298 Score = 353 bits (906), Expect = 2e-95, Method: Composition-based stats. Identities = 113/305 (37%), Positives = 172/305 (56%), Gaps = 17/305 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQE 76 H PVLL++ + LN P V +D TFG GG+SR + A D+D A+ Sbjct: 4 HNPVLLKETVDGLNIRPDGVYVDVTFGGGGHSREIMSRLGENGKLFAFDQDLDALKNAI- 62 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 Y E+F+L F ++ ++ G VDG++ DLGVSS Q D +RGFS + L Sbjct: 63 ----YDERFTLINENFRFIKRFLRFHGIKQVDGILADLGVSSHQFDVAERGFSTRFDAEL 118 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ G ISA VVN+ + ++++R+L GE K A +A+ IV R+ + + L Sbjct: 119 DMRMNQKGDISAYHVVNEYDEQEISRVLFNYGELKNARAMANVIVTARKDKEIRNSDQLK 178 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++ K + K N+I + +QA+RI VN E+E L + L + + LK GG L V+S+HS Sbjct: 179 QVLAKFLPGHKANKI--LAQIYQAIRIEVNQEMEVLKEFLEQSLEILKPGGRLSVISYHS 236 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDRLVK+F + + R + P F++I +K++VP++E++A N R+RSAKLR Sbjct: 237 LEDRLVKRFVKNGMFEGEPERDFFGNFEVP--FKTI-EKLIVPSEEEIAINNRARSAKLR 293 Query: 313 AGMRT 317 + Sbjct: 294 VAEKI 298 >gi|163841237|ref|YP_001625642.1| S-adenosyl-methyltransferase MraW [Renibacterium salmoninarum ATCC 33209] gi|162954713|gb|ABY24228.1| S-adenosyl-methyltransferase [Renibacterium salmoninarum ATCC 33209] Length = 382 Score = 353 bits (906), Expect = 3e-95, Method: Composition-based stats. Identities = 120/326 (36%), Positives = 183/326 (56%), Gaps = 15/326 (4%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPAPGK--------VILDATFGAGGYSRSFCKMGS-- 59 ++ HVPVL ++ + LL PA V++DAT G GG+S + Sbjct: 54 TTPPPADAPRHVPVLRDRCVNLLAPAIEAANLAGRRAVVVDATLGMGGHSEAMLTRFENL 113 Query: 60 NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSM 116 ++I +DRD A+ ++ ++++ L A + ++ + + D G +DGV+ DLGVSS+ Sbjct: 114 HLIGIDRDTQALDLSGARLKPFEDRTDLVHAVYDEITEVLDDLGFESIDGVLMDLGVSSL 173 Query: 117 QIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175 Q+D +RGF++ PLDMRM S G SA+DVVN + +L I+ GEEK A RIA+ Sbjct: 174 QLDEAERGFAYSYDAPLDMRMDTSRGQSAADVVNSYSETELVSIIRRWGEEKFAGRIANR 233 Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRS 234 IV R PF T +L +I+K V + HPA R+FQALRI VN E+ L + + + Sbjct: 234 IVAARAEKPFAGTGELVEVIRKAVPAAAARTGGHPAKRTFQALRIEVNEELVVLERAVPA 293 Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVV 294 A AL GG +V+S+HSLED++VKKFF++ + ++ +++TK V Sbjct: 294 AVDALAIGGRAVVMSYHSLEDKIVKKFFSTGVTSSAPPGFPVELDSQKPELKTLTKGTEV 353 Query: 295 PTQEDVAFNRRSRSAKLRAGMRTVER 320 PT+ ++A N R+ SA+LRA R R Sbjct: 354 PTEAEIAENPRAASARLRAVERIRPR 379 >gi|145637120|ref|ZP_01792783.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae PittHH] gi|145269774|gb|EDK09714.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae PittHH] Length = 321 Score = 353 bits (906), Expect = 3e-95, Method: Composition-based stats. Identities = 122/325 (37%), Positives = 174/325 (53%), Gaps = 20/325 (6%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M+S + +H+ VLL + + L + +D TFG GG+SR +IA+D Sbjct: 1 MNSENSFSSSEHITVLLHEAVNGLALKENGIYIDGTFGRGGHSRFILSQLSSNGRLIAVD 60 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCG 121 RDP A++ + +F + +FS + + +DG++ DLGVSS Q+D Sbjct: 61 RDPRAIAEAHKI---QDSRFQIEHNSFSHIPEICDKLNLVGKIDGILLDLGVSSPQLDEA 117 Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF K GPLDMRM + G+SA + + Q +++DLT +L GEE+ A RIA AIV Sbjct: 118 ERGFSFMKDGPLDMRMDTTQGLSAEEWLKQVSIEDLTWVLKTFGEERFAKRIATAIVDFN 177 Query: 181 QSAP------FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234 +SA T L+ LI + V F K+ HPATRSFQA+RIF+N+E++EL L S Sbjct: 178 KSAVKNSTEFLSRTSQLAELISQAVPF-KDKYKHPATRSFQAIRIFINSELDELESLLNS 236 Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS--ITKKV 292 A L G L ++SFHSLEDR+VK F +S + + Q I K Sbjct: 237 ALDMLAPEGRLSIISFHSLEDRMVKHFMKKQSKGEDIPKGLPLREDQIQRNQKLRIIGKA 296 Query: 293 VVPTQEDVAFNRRSRSAKLRAGMRT 317 + P+ ++ N RSRSA LR R Sbjct: 297 IQPSDAEIQANPRSRSAILRVAERI 321 >gi|30248986|ref|NP_841056.1| methyltransferase family protein [Nitrosomonas europaea ATCC 19718] gi|42559461|sp|Q82VT1|RSMH_NITEU RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|30138603|emb|CAD84894.1| Methyltransferase family [Nitrosomonas europaea ATCC 19718] Length = 317 Score = 353 bits (906), Expect = 3e-95, Method: Composition-based stats. Identities = 117/312 (37%), Positives = 172/312 (55%), Gaps = 18/312 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 HVPVLLE+ LN + +DATFG GG+SR +IA D+DP A+S + Sbjct: 1 MHVPVLLEEAADALNIRADGIYVDATFGRGGHSRLILSRLGESGRLIAFDKDPAAISAAR 60 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E+F +++Q++ + V DG++ DLGVSS+Q+D RGFSF+ GP Sbjct: 61 SIR---DERFQAVHGSYAQIRTALESLSVSRIDGILLDLGVSSIQLDEASRGFSFRHDGP 117 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G +A++ + +L ++ GEE+ A +IA AIV + P TT L Sbjct: 118 LDMRMDSSRGKTAAEWLATVTETELKEVIRTYGEERYAGQIAGAIVMAQTRQPIVTTFQL 177 Query: 192 SSLIQKTVYF--SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 + ++ V ++ R HPATR+FQA+RI +N E+EEL+ L + L A G L+V+S Sbjct: 178 AEIVAAVVRKFGHRDGRQHPATRTFQAIRIHLNQELEELSVTLPQCVELLNANGRLVVIS 237 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNR 304 FHSLEDR+VK+F ++G R + + Q I KK + P + +VA N Sbjct: 238 FHSLEDRIVKRFMRMQAGTDTLPRKLPVRDEESRMHSRQTLQIIGKK-IRPGENEVAANP 296 Query: 305 RSRSAKLRAGMR 316 R+RSA +R + Sbjct: 297 RARSAVMRVAEK 308 >gi|238754428|ref|ZP_04615783.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia ruckeri ATCC 29473] gi|238707257|gb|EEP99619.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia ruckeri ATCC 29473] Length = 304 Score = 353 bits (906), Expect = 3e-95, Method: Composition-based stats. Identities = 118/305 (38%), Positives = 172/305 (56%), Gaps = 15/305 (4%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRD 80 LL++ + LN + +D TFG GG+SR +IA+DRDP A+ + Sbjct: 2 LLDEAVNGLNIRSNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDRDPQAIEAAKSI--- 58 Query: 81 YKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 +FS+ FS+L YV + +DGV+ DLGVSS Q+D +RGFSF + GPLDMR Sbjct: 59 TDPRFSIVHGPFSELAHYVRELDLVGKIDGVLLDLGVSSPQLDDPERGFSFMRDGPLDMR 118 Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M S GISA++ + +A D+ +L GEE+ A R+A AIV+R + P T +L++LI Sbjct: 119 MDPSRGISAAEWLMKAGADDIAWVLKTFGEERFAKRLARAIVERNLTQPMTRTTELANLI 178 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 F + ++ HPATRSFQA+RI++N+E+EE+ + L A + L G L V+SFHSLED Sbjct: 179 ANASPFREKHK-HPATRSFQAIRIYINSELEEIERALEGALEVLAPAGRLSVISFHSLED 237 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNRRSRSAKLR 312 R+VK F ++S + + K V +P+ +VA N R+RS+ LR Sbjct: 238 RIVKNFIRNQSRGPKVPAGLPLTEEQLQSLGGRNLKAVGKMMPSDAEVAENPRARSSVLR 297 Query: 313 AGMRT 317 R Sbjct: 298 FAERI 302 >gi|320334677|ref|YP_004171388.1| ribosomal RNA small subunit methyltransferase H [Deinococcus maricopensis DSM 21211] gi|319755966|gb|ADV67723.1| Ribosomal RNA small subunit methyltransferase H [Deinococcus maricopensis DSM 21211] Length = 295 Score = 353 bits (906), Expect = 3e-95, Method: Composition-based stats. Identities = 115/310 (37%), Positives = 163/310 (52%), Gaps = 23/310 (7%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSC 73 + H+PVL +V+ L P PG+V +D T G G++R G+ V +D+DP+A+ Sbjct: 3 DQSPLTHIPVLATEVLDALQPQPGQVFVDGTLGGAGHTRLLLAAGATVYGIDQDPYALER 62 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKS 130 + + + F ++ + D GVD GV+ D+GVSS Q+D RGFS+ Sbjct: 63 NR---AAGLNGLHVLEGNFRDMRALLNDAGVDHVDGVLLDIGVSSFQLDDAARGFSYHTE 119 Query: 131 GPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRMS G SA+D+VN DL I+ GEE+ + RIA IV R P TT Sbjct: 120 APLDMRMSQGGDSAADLVNDMEEADLAAIIFEYGEERHSRRIARGIVNARDKGPISTTTQ 179 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ +I++ IHPA R+FQALRI VN+E+ L GL+ A L+ GG L V+SF Sbjct: 180 LADIIKRAYPGGHARGIHPARRTFQALRIAVNDELGALRDGLQGASDLLRPGGRLAVISF 239 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDR+VK+F +TK+ + +++ A N R+RSAK Sbjct: 240 HSLEDRIVKRFL-----------------LADPTLDPLTKRPIEAAEDEQARNPRARSAK 282 Query: 311 LRAGMRTVER 320 LR + E Sbjct: 283 LRGARKRAEE 292 >gi|302561117|ref|ZP_07313459.1| methylase MraW [Streptomyces griseoflavus Tu4000] gi|302478735|gb|EFL41828.1| methylase MraW [Streptomyces griseoflavus Tu4000] Length = 318 Score = 353 bits (906), Expect = 3e-95, Method: Composition-based stats. Identities = 124/310 (40%), Positives = 184/310 (59%), Gaps = 10/310 (3%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 HVPV+L++ + LL PA PG V++D T G GG+S + + ++ALDRD A+ Sbjct: 6 HVPVMLQRCLDLLAPALEGPGAVVVDCTLGLGGHSEALLRRFPEARLVALDRDKEALRLS 65 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E + + E+ +L A + +L D + G+ GV+FDLGVSSMQ+D RGF++ + Sbjct: 66 GERLAPFGERATLVHAVYDELPDVLGRLGIARAQGVLFDLGVSSMQLDEAGRGFAYAQDA 125 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + G+SA++V+N +L RIL GEEKQA RI AIV+ R+ PF + Sbjct: 126 PLDMRMDQTTGVSAAEVLNTYPPGELVRILRAYGEEKQAKRIVSAIVREREKEPFTNSAR 185 Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L LI+ + +K +PA R+FQALRI VN E+ L + + +A KAL GG + V+S Sbjct: 186 LVELIRDALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVKALGVGGRIAVLS 245 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 +HSLEDRLVK+ FA+ + + + + +T+ +PT+E++A NRR+ A Sbjct: 246 YHSLEDRLVKQVFAAGAATTAPPGLPVVPEQYQPRLKLLTRGAELPTEEEIAENRRAAPA 305 Query: 310 KLRAGMRTVE 319 +LR R E Sbjct: 306 RLRGAERIRE 315 >gi|296106496|ref|YP_003618196.1| S-adenosylmethyl transferase MraW [Legionella pneumophila 2300/99 Alcoy] gi|295648397|gb|ADG24244.1| S-adenosylmethyl transferase MraW [Legionella pneumophila 2300/99 Alcoy] Length = 308 Score = 353 bits (906), Expect = 3e-95, Method: Composition-based stats. Identities = 115/311 (36%), Positives = 167/311 (53%), Gaps = 12/311 (3%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H VLL + I L + D TFG GG+SR + A+D+D AV Sbjct: 1 MAKHQSVLLHESIKGLAIKADGIYFDGTFGRGGHSREILNHLSDKGRLFAIDKDLDAVQY 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGV----DGVVFDLGVSSMQIDCGDRGFSFQK 129 ++ ++F +F +F+Q++++ GV DG++ DLGVSS Q+D +RGFSF Sbjct: 61 AKDYF-GLDKRFQIFHGSFAQIKEFASQAGVIGAVDGILLDLGVSSPQLDNPERGFSFML 119 Query: 130 SGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM I+A++ VN+A V +L + GEE+ A RIA AIV R+ P TT Sbjct: 120 QGPLDMRMDLTQSINAANFVNEAEVNELAHVFRAYGEERFAGRIAKAIVDARKLKPITTT 179 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ ++++ + ++ HPATR FQA+RI VN E+ +L+ L L G L V+ Sbjct: 180 LELAEIVKEANPKWEKHK-HPATRVFQAIRIHVNQELTDLSNCLEECLDVLGPRGRLAVI 238 Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 SFHSLEDR+VK+F + G V I F+ + K V P ++ N RSR Sbjct: 239 SFHSLEDRIVKQFMRDKEQGNRPPVEVPIKYEELKTNFKRV-GKAVKPQSSEIKENVRSR 297 Query: 308 SAKLRAGMRTV 318 SA LR G + Sbjct: 298 SAVLRIGEKLA 308 >gi|145633140|ref|ZP_01788872.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae 3655] gi|144986366|gb|EDJ92945.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae 3655] Length = 321 Score = 353 bits (906), Expect = 3e-95, Method: Composition-based stats. Identities = 122/325 (37%), Positives = 173/325 (53%), Gaps = 20/325 (6%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M+S + +H+ VLL + + L + +D TFG GG+SR +IA+D Sbjct: 1 MNSENSFSSSEHITVLLHEAVNGLALKENGIYIDGTFGRGGHSRFILSQLSSNGRLIAVD 60 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCG 121 RDP A+ + +F + +FS + + +DG++ DLGVSS Q+D Sbjct: 61 RDPRAIVEAHKI---QDSRFQIEHNSFSHIPEICDKLNLVGKIDGILLDLGVSSPQLDEA 117 Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF K GPLDMRM + G+SA + + Q +++DLT +L GEE+ A RIA AIV Sbjct: 118 ERGFSFMKDGPLDMRMDTTQGLSAEEWLKQVSIEDLTWVLKTFGEERFAKRIATAIVDFN 177 Query: 181 QSAP------FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234 +SA T L+ LI + V F K+ HPATRSFQA+RIF+N+E++EL L S Sbjct: 178 KSAVKNSTEFLSRTSQLAELISQAVPF-KDKHKHPATRSFQAIRIFINSELDELESLLNS 236 Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS--ITKKV 292 A L G L ++SFHSLEDR+VK F +S + + Q I K Sbjct: 237 ALDMLAPEGRLSIISFHSLEDRMVKHFMKKQSKGEDIPKGLPLREDQIQRNQKLRIIGKA 296 Query: 293 VVPTQEDVAFNRRSRSAKLRAGMRT 317 + P+ ++ N RSRSA LR R Sbjct: 297 IQPSDAEIQANPRSRSAILRVAERI 321 >gi|163732141|ref|ZP_02139587.1| S-adenosyl-methyltransferase, putative [Roseobacter litoralis Och 149] gi|161394439|gb|EDQ18762.1| S-adenosyl-methyltransferase, putative [Roseobacter litoralis Och 149] Length = 330 Score = 352 bits (905), Expect = 3e-95, Method: Composition-based stats. Identities = 142/316 (44%), Positives = 190/316 (60%), Gaps = 6/316 (1%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQET 77 H+PVLL ++ + P G LD TFGAGGY+R + G+ VIA+DRDP A + Sbjct: 12 PHIPVLLSAILDAVAPVHGD-WLDGTFGAGGYTRGLLEAGADRVIAVDRDPLAFEMAADW 70 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 Y + FS++ Y +DGVV DLGVSSMQ+D +RGFSF + GPLDMRM Sbjct: 71 ADAYGARLVQQLGVFSKMDTYAD--ALDGVVLDLGVSSMQLDLAERGFSFMRDGPLDMRM 128 Query: 138 SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK 197 S G SA+D+VN+A+ + + IL GEE+ + RIA AI+ R AP TT L+ +I++ Sbjct: 129 SQEGPSAADIVNEASAETIANILFQYGEERASRRIAKAILTERAIAPITTTLHLAGIIER 188 Query: 198 TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRL 257 + SK + H ATRSFQALRI VN+E EL QGL +AE+ALK GG L VV+FHS+EDR+ Sbjct: 189 CLPRSKPGQSHAATRSFQALRIAVNDEYGELYQGLMAAERALKPGGQLAVVTFHSVEDRM 248 Query: 258 VKKFFASRSGKVMAVRHMIPS-NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 VK+F +R+G P F ++K +V +VA N R+RSAKLR +R Sbjct: 249 VKRFLTARAGAGGNANRFAPEVQRDAPAFTLRSRKAIVADYAEVAANPRARSAKLRIAVR 308 Query: 317 TVERSIE-DDSFVHLP 331 T + E D V +P Sbjct: 309 TDAPAGEIDAKSVGMP 324 >gi|66769818|ref|YP_244580.1| S-adenosyl-methyltransferase MraW [Xanthomonas campestris pv. campestris str. 8004] gi|81304228|sp|Q4UQW3|RSMH_XANC8 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|66575150|gb|AAY50560.1| cell division protein [Xanthomonas campestris pv. campestris str. 8004] Length = 342 Score = 352 bits (905), Expect = 3e-95, Method: Composition-based stats. Identities = 125/331 (37%), Positives = 177/331 (53%), Gaps = 11/331 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69 + HVPVL +V+ L LD TFG GG++R + G ++ +D+DP Sbjct: 1 MSQPPAAHVPVLYTQVLEGLQVTENGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDPE 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 AV+ Q T + S+ +F++L V VDG++ DLGVSS Q+D RGFSF K Sbjct: 61 AVAVSQHTFGG-DARVSIHPGSFARLVQVVAAATVDGILLDLGVSSPQLDVAGRGFSFGK 119 Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM SG SA+ + QA +++ +L GEE+Q+ RIA AIV RR P T Sbjct: 120 DGPLDMRMDPDSGQSAAGWLAQATDREIADVLWTYGEERQSRRIARAIVARRGEQPLLRT 179 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ LI + +++ HPATRSFQA+RI +N E+ +L GL +A ALK GG L V+ Sbjct: 180 AQLADLIASVMPRG-DSKTHPATRSFQAIRIHINRELADLEAGLDAALGALKPGGRLAVI 238 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDR+VK+F A + + R + + Q ++ + ++A N R+RS Sbjct: 239 SFHSLEDRIVKQFMARYAKAPPSNRRLPEAQPFVPTLQLVS-GAIKADDSELAVNPRARS 297 Query: 309 AKLRAGMR----TVERSIEDDSFVHLPRLPT 335 A LR + E + R PT Sbjct: 298 AVLRVAEKLGMENRESGMGKGHGAAASRFPT 328 >gi|126726611|ref|ZP_01742451.1| S-adenosyl-methyltransferase MraW [Rhodobacterales bacterium HTCC2150] gi|126703940|gb|EBA03033.1| S-adenosyl-methyltransferase MraW [Rhodobacterales bacterium HTCC2150] Length = 317 Score = 352 bits (905), Expect = 3e-95, Method: Composition-based stats. Identities = 138/318 (43%), Positives = 183/318 (57%), Gaps = 9/318 (2%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQE 76 HVPVLL +IA P LD TFGAGGY+R+ G++ VIA+D+DP + Sbjct: 4 APHVPVLLRPIIAKTAPIS-GTWLDGTFGAGGYTRALLDAGADTVIAVDQDPLVFDMAKS 62 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 +Y + + F+ L + +DG+V DLGVSSMQID +RGFSF + GPLDMR Sbjct: 63 WADEYGARLVPVASNFADLDK--AGQNLDGIVLDLGVSSMQIDQAERGFSFMQDGPLDMR 120 Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 MS SG +A+D+VN A +L IL GEE+ + RIA AI+ R P TT +L + I Sbjct: 121 MSQSGPTAADLVNTATEAELADILFQYGEERASRRIAKAIIAAR---PLNTTAELVAAIT 177 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 + K + HPATRSFQALRI VN+E+ L +GL +AE+AL G L VV+FHSLEDR Sbjct: 178 EVAPVKK-GQSHPATRSFQALRIAVNDELGALIRGLEAAERALAPNGWLAVVTFHSLEDR 236 Query: 257 LVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 +VK+F SRS R+ + F+ +K + E+VA N R+RSA LR R Sbjct: 237 IVKRFLQSRSAISQGSRYAPEQKSAAPTFELQGRKAIKADDEEVAANPRARSASLRLAKR 296 Query: 317 TVERSIEDD-SFVHLPRL 333 T + D + LP L Sbjct: 297 TTAAARPSDWGKLGLPGL 314 >gi|159027563|emb|CAO86934.1| MraW [Microcystis aeruginosa PCC 7806] Length = 293 Score = 352 bits (905), Expect = 3e-95, Method: Composition-based stats. Identities = 117/304 (38%), Positives = 176/304 (57%), Gaps = 27/304 (8%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQET 77 H+ VL +++IA LN PG LD T G GG+SR + V A+DRD A+ + + Sbjct: 7 HISVLSQELIAGLNIQPGGHYLDLTLGGGGHSRLLLEAHPETKVTAIDRDQSALEAAKIS 66 Query: 78 MRDY-KEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + Y + +L+ F+ + + DG++ DLGVSS Q D +RGFSF+ + LDMR Sbjct: 67 LAPYLDSRLTLWWGNFADYKG--QNSSFDGIIADLGVSSPQFDQSERGFSFRHTAALDMR 124 Query: 137 MS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M C ++A+D++N K+L + GEE+ + IA +IV++R PF TT +L+++I Sbjct: 125 MDRCQSLTAADIINHWQEKELADLFYQYGEERLSRPIARSIVQKR---PFTTTTELAAVI 181 Query: 196 QKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 +V S + RIHPATR FQ+LRI VN E++ L + L A + LK+GG++ ++SFHSLE Sbjct: 182 ASSVPASYRYGRIHPATRVFQSLRIAVNQELDSLQKLLNQAPQWLKSGGIIAMISFHSLE 241 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 DRL+K F + + ITKK ++P++E+ A N RSRSAKLR Sbjct: 242 DRLIKYGFREDNS-----------------LKIITKKPIIPSREEQAKNPRSRSAKLRIA 284 Query: 315 MRTV 318 + Sbjct: 285 QKIE 288 >gi|194364373|ref|YP_002026983.1| S-adenosyl-methyltransferase MraW [Stenotrophomonas maltophilia R551-3] gi|262826731|sp|B4SJW8|RSMH_STRM5 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|194347177|gb|ACF50300.1| S-adenosyl-methyltransferase MraW [Stenotrophomonas maltophilia R551-3] Length = 322 Score = 352 bits (905), Expect = 3e-95, Method: Composition-based stats. Identities = 120/310 (38%), Positives = 179/310 (57%), Gaps = 8/310 (2%) Query: 12 AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDP 68 + + H+PVL +V+ L LD TFG GG++R ++ +D+DP Sbjct: 11 PVSQSPAVHLPVLYTQVLEGLRVIENGRYLDGTFGRGGHARGVLTQLGPEGRLLVMDKDP 70 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDY-VPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 A++ + + S+F+ +F+QL + +G+DGV+FDLGVSS Q+D +RGFSF Sbjct: 71 EAIAVAERDFAP-DPRVSIFRGSFAQLLQWDATAEGLDGVLFDLGVSSPQLDVAERGFSF 129 Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 K GPLDMRM SG SA+ +N+ +++ +L GEE+Q+ RIA AIV RR+ PF Sbjct: 130 GKDGPLDMRMDPDSGESAAQWINRVEDREIADVLWTYGEERQSRRIARAIVARREKQPFS 189 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T +L+ LI + K ++IHPATRSFQA+RI +N E+ +L GL +A + LK GG L Sbjct: 190 RTAELAELIASVMPRGK-DKIHPATRSFQAIRIHINRELADLEAGLDAAVERLKPGGRLA 248 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 ++SFHSLEDR+VK++ + A R + + I + T E++A N R+ Sbjct: 249 IISFHSLEDRIVKQYMNRLAKAPPANRRLPEAEVFVPTLDLI-GGAIKATDEELAANPRA 307 Query: 307 RSAKLRAGMR 316 RSA LR + Sbjct: 308 RSAVLRVAQK 317 >gi|325280032|ref|YP_004252574.1| Ribosomal RNA small subunit methyltransferase H [Odoribacter splanchnicus DSM 20712] gi|324311841|gb|ADY32394.1| Ribosomal RNA small subunit methyltransferase H [Odoribacter splanchnicus DSM 20712] Length = 302 Score = 352 bits (905), Expect = 4e-95, Method: Composition-based stats. Identities = 103/304 (33%), Positives = 168/304 (55%), Gaps = 15/304 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 HVPVLL++ + L+ G V LD TFG GG+S K ++ D+D A++ E Sbjct: 5 HVPVLLKESVDGLDIRQGGVYLDLTFGGGGHSGEILKRLDAEGCLLGFDQDEDALANVPE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++F F L++++ G DG++ DLGVSS + D RGFSF+ L Sbjct: 65 -----DDRFIFVNHNFRYLRNFMRYYGYEEADGILADLGVSSHEFDEAGRGFSFRFEAEL 119 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ S ++A+ V+N + + LT I GE + A R+ IVK R + +T++ Sbjct: 120 DMRMNQRSKLTAATVLNTYDAEQLTAIFRNYGEVENARRLVDLIVKARANQEIKTSEAFY 179 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I + K + +QALRI VN E+E L + ++ A + LK GG L+++++HS Sbjct: 180 QIILPCIP--KLKEKKYLAKVYQALRIEVNGELEALEEMMQQAMEVLKPGGRLVIITYHS 237 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK F + + + + ++ + H F+ + +KV+VP++E++ N R+RSAKLR Sbjct: 238 LEDRIVKNFLKAGNAEGKLEKDLVFGHVHHN-FELVNRKVIVPSEEEIVRNPRARSAKLR 296 Query: 313 AGMR 316 + Sbjct: 297 IARK 300 >gi|209963954|ref|YP_002296869.1| S-adenosyl-methyltransferase MraW [Rhodospirillum centenum SW] gi|262825439|sp|B6IRH0|RSMH_RHOCS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|209957420|gb|ACI98056.1| S-adenosyl-methyltransferase MraW [Rhodospirillum centenum SW] Length = 329 Score = 352 bits (905), Expect = 4e-95, Method: Composition-based stats. Identities = 132/309 (42%), Positives = 189/309 (61%), Gaps = 7/309 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSNVIALDRDPFAVSCGQETM 78 H+PVL ++V+ L P G V++D TFGAGGY+ + V A+DRDP AV+ G Sbjct: 16 HIPVLRDEVVDALAPRDGAVLVDGTFGAGGYTAALLASAACTVWAIDRDPAAVARGHALA 75 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + + ++ TF ++ + G VDG+ D+GVSS QID RGFSF+ GPLDM Sbjct: 76 ARHPGRLTVLDGTFGCMESLLAAHGITRVDGIALDIGVSSPQIDDPSRGFSFRFDGPLDM 135 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RM G +A+D+VN+ + ++ I+ GEE+ + R+A AIV RR+ AP T DL+ ++ Sbjct: 136 RMGSHGTTAADIVNERDEAEIADIVWRYGEERHSRRVARAIVARRREAPITRTLDLAEIV 195 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + V SK+ I PATR+FQALRI VN+E+ EL +GL +AE+ L GG L VV+FHSLED Sbjct: 196 RSVVPKSKDG-IDPATRTFQALRIAVNDELGELERGLAAAERLLAPGGRLAVVTFHSLED 254 Query: 256 RLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 R+VK+F SRS A + P++A F+ I + V P ++A N R+RSA+LR+ Sbjct: 255 RVVKEFLRSRSAAAPAPSRHLPAPADAPAPTFRLIARSGVTPAPAELAANPRARSARLRS 314 Query: 314 GMRTVERSI 322 RT + Sbjct: 315 AERTSAPAR 323 >gi|212702349|ref|ZP_03310477.1| hypothetical protein DESPIG_00362 [Desulfovibrio piger ATCC 29098] gi|212674227|gb|EEB34710.1| hypothetical protein DESPIG_00362 [Desulfovibrio piger ATCC 29098] Length = 334 Score = 352 bits (905), Expect = 4e-95, Method: Composition-based stats. Identities = 119/317 (37%), Positives = 173/317 (54%), Gaps = 18/317 (5%) Query: 20 HVPVLLEKVIALLNP-------APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFA 70 H+PVL+++ +A L P P ++ LD T G G+S + + + ALDRD A Sbjct: 16 HIPVLMKETLAALQPVLDAGRDRPVRI-LDGTLGMAGHSCAMLQAAPMAELCALDRDEEA 74 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSF 127 + + + + ++ + +SQ ++ + D G VD V+ D+GVSS+Q+D +RGFSF Sbjct: 75 LELARRRLEPFGDRVHTYHCRYSQFEEALDDLGWEKVDAVLLDIGVSSLQLDEAERGFSF 134 Query: 128 QKSGPLDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 GPLDMRM SA VN+ N L + LGEE QA RIA AIV RQ +P Sbjct: 135 YGDGPLDMRMDQHSGAPSAWHWVNRENFDRLKECIATLGEEPQAGRIARAIVDARQKSPI 194 Query: 186 QTTQDLSSLIQKTVYFSKNNR--IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 TT L++L++K + + HPATR+FQALR+ VN+E+ EL + L + L GG Sbjct: 195 DTTAQLAALVEKAYPPAWRAKARRHPATRTFQALRMAVNDELGELRRFLDAILGRLSLGG 254 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAF 302 L V+SFHSLEDR+VK+ + RH + H + + KK V +++A Sbjct: 255 RLSVISFHSLEDRMVKQTMRYWAEGCRCPRHVPVCVCHHVPEVEILYKKPVQADDDELAV 314 Query: 303 NRRSRSAKLRAGMRTVE 319 N R+ SAKLRA + E Sbjct: 315 NPRASSAKLRAVEKIAE 331 >gi|260910904|ref|ZP_05917546.1| S-adenosyl-methyltransferase MraW [Prevotella sp. oral taxon 472 str. F0295] gi|260634961|gb|EEX53009.1| S-adenosyl-methyltransferase MraW [Prevotella sp. oral taxon 472 str. F0295] Length = 319 Score = 352 bits (904), Expect = 4e-95, Method: Composition-based stats. Identities = 109/321 (33%), Positives = 172/321 (53%), Gaps = 17/321 (5%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALD 65 ++ I G HVPVLL + + LN G V +D TFG GG++ + + + D Sbjct: 2 INDNITTAQGYHVPVLLAESVDALNIFKGGVYVDVTFGGGGHTCHILSKMDATARLFSFD 61 Query: 66 RDPFAVSCGQETMRDY------KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSM 116 +D A + + +F+ ++ F L +++ GV DG++ DLGVSS Sbjct: 62 QDADAEENTRREGSEGQSPLANDNRFTFVRSNFRYLDNWMRYYGVEHVDGILADLGVSSH 121 Query: 117 QIDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175 D +RGFSF+ PLDMRM+ + ++A+ V+N + + L + + GE +Q+ RIA A Sbjct: 122 HFDDQERGFSFRFDAPLDMRMNKNATLTAAQVLNTYDEEKLADVFFLYGEIRQSRRIASA 181 Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 IVK R A TTQ+ +++++ +F + FQALRI VNNE++ L + L++A Sbjct: 182 IVKARAKAAVHTTQEFAAIVEP--FFKLEREKKEMAKLFQALRIEVNNEMDALKEMLQAA 239 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295 + L GG L V+++HSLEDR+VK F + + + + P F + KV+VP Sbjct: 240 SEWLGKGGRLSVITYHSLEDRMVKNFMKTGNVEGKLSQDFFGRAQTP--FTLVNNKVIVP 297 Query: 296 TQEDVAFNRRSRSAKLRAGMR 316 T ++ N RSRSAKLR + Sbjct: 298 TADEQLRNPRSRSAKLRIAEK 318 >gi|218961102|ref|YP_001740877.1| S-adenosyl-methyltransferase MraW [Candidatus Cloacamonas acidaminovorans] gi|167729759|emb|CAO80671.1| S-adenosyl-methyltransferase MraW [Candidatus Cloacamonas acidaminovorans] Length = 327 Score = 352 bits (904), Expect = 4e-95, Method: Composition-based stats. Identities = 120/311 (38%), Positives = 175/311 (56%), Gaps = 10/311 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQET 77 H PV++++ ++ LN G + +DAT G GG+S + K + D+D A+ + Sbjct: 4 HTPVMVKECLSYLNLRAGYIYVDATTGGGGHSLAMLKAQPEIKLYCFDQDSEAIEEAGKI 63 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + +Y L QA F QL+ + + G+DG++FDLGVSS Q++C +RGFSF+K PLD Sbjct: 64 LHNY-NNVELIQANFKQLRTELAYRKIKGIDGILFDLGVSSHQLECTERGFSFEKDAPLD 122 Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM + SA + VN+ + K LT I GEE+ A RIA AI K S P +TT++L+ Sbjct: 123 MRMDKNLKNSAYNAVNELDTKTLTNIFREYGEEQNAYRIAKAIEK--SSKPIKTTRELAK 180 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 +++ + R FQALRI+VN E+E L+ L+ A L G ++V+S+HSL Sbjct: 181 IVESIAGKGTKASLKTKVRVFQALRIYVNKELESLSLALQDAINLLNPQGRIVVISYHSL 240 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSN-AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 EDR+VK+ F K + SN H +TKK V T+E++ N RSRSAKLR Sbjct: 241 EDRIVKQTFKKAEQKNEEQSVLPNSNKNHQQQLIILTKKPVTATEEEILVNPRSRSAKLR 300 Query: 313 AGMRTVERSIE 323 AG + E Sbjct: 301 AGEKVQREKRE 311 >gi|77919804|ref|YP_357619.1| S-adenosylmethionine-dependent methyltransferase [Pelobacter carbinolicus DSM 2380] gi|88909207|sp|Q3A2F8|RSMH_PELCD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|77545887|gb|ABA89449.1| predicted S-adenosylmethionine-dependent methyltransferase [Pelobacter carbinolicus DSM 2380] Length = 314 Score = 352 bits (904), Expect = 4e-95, Method: Composition-based stats. Identities = 123/313 (39%), Positives = 176/313 (56%), Gaps = 9/313 (2%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPF 69 + + H V+ E+V+ L P PG+V +D T G GG++R + + ++ LDRD Sbjct: 1 MTREVFQHSSVMPEEVLECLRPQPGEVFVDGTVGGGGHARLILEATAPDGLLVGLDRDRE 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFS 126 A+ + + E+ L F+ + + VDG++ DLGVSS Q+D RGFS Sbjct: 61 ALEEAGRQLASFGERVLLRHGNFADATRILAELDIATVDGILLDLGVSSFQLDTARRGFS 120 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 FQ PLDMRM S G++A+DVVN + ++L RI GEE+ A RIA I K R P Sbjct: 121 FQSDAPLDMRMDTSAGMTAADVVNALSPEELARIFREYGEERYARRIARRIEKVRADEPL 180 Query: 186 QTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 TT+ L+ L++ V +RIHPATR FQALRI VN E++ L +GLR + LK GG Sbjct: 181 MTTRQLAELVRDAVPGGHVPSRIHPATRVFQALRIHVNAELDSLREGLRRSLALLKPGGR 240 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 + V+SFHSLEDR+VK+FF S + I + +T+K + ++ ++A N Sbjct: 241 MAVISFHSLEDRIVKQFFRSEVQTCICPPGLPICACNRKPGVALLTRKGLKASESEIAAN 300 Query: 304 RRSRSAKLRAGMR 316 R+RSA LRA R Sbjct: 301 PRARSAVLRAIRR 313 >gi|299768536|ref|YP_003730562.1| S-adenosyl-methyltransferase MraW [Acinetobacter sp. DR1] gi|298698624|gb|ADI89189.1| S-adenosyl-methyltransferase MraW [Acinetobacter sp. DR1] Length = 307 Score = 352 bits (904), Expect = 5e-95, Method: Composition-based stats. Identities = 112/310 (36%), Positives = 170/310 (54%), Gaps = 16/310 (5%) Query: 20 HVPVLLEKVIA-LLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H+ VLL + + LL V +DATFG GG++R + V A D+DP A+ Sbjct: 3 HISVLLFETVESLLADRTTGVYIDATFGRGGHTRLLLSKLDENARVYAFDKDPQALEVA- 61 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F++ A+F+ +++ + + GV DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 62 AALAQEDPRFTIIHASFADIKEKMQEIGVMSVDGIMADLGVSSPQLDQAERGFSFMQDGP 121 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G++A++ + + + L I+ GEE+ + RIA AI TT L Sbjct: 122 LDMRMDNSKGLTAAEWLLEIEEEQLANIIYQYGEERYSRRIAKAIKNA---GKLDTTAQL 178 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + L++ + ++ HPATR+FQA+RI +N E+E++ L A LK G L V+SFH Sbjct: 179 AELVKTAHPKWEKHK-HPATRTFQAIRIAINKELEDIEVFLPQAVDLLKPEGRLSVISFH 237 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNA-HPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDRL+K+F S +P + I++ V ++E+V N RSRSA Sbjct: 238 SLEDRLIKQFIQKESTLAEDFGWGMPEQRVDTRRLKKISR--VRASEEEVKANPRSRSAW 295 Query: 311 LRAGMRTVER 320 LR R E+ Sbjct: 296 LRVAERLEEK 305 >gi|330877141|gb|EGH11290.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 313 Score = 352 bits (904), Expect = 5e-95, Method: Composition-based stats. Identities = 112/307 (36%), Positives = 174/307 (56%), Gaps = 12/307 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H+ VLLE+ + L LD TFG GG+SR ++ D+DP A++ GQ Sbjct: 7 HITVLLEEAVEALAVRADGCYLDGTFGRGGHSRLILNHLGPDGRLLGFDKDPQAIATGQA 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F + Q +F++L + G V G++ DLGVSS Q+D +RGFSF GP Sbjct: 67 -LAAEDGRFVIVQRSFAELGSQAQELGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDGP 125 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G+SA++ + A +++ R+ GEE+ A R+A+A+V+RR+ PF+ T DL Sbjct: 126 LDMRMDPTRGVSAAEFIASAPAEEIARVFKEYGEERFAKRMANAVVQRREIQPFERTADL 185 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +++ + + +PATR+FQ LRI VNNE+ +L GL +A ++L+ GG L+V+SFH Sbjct: 186 AEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAAMESLEIGGRLVVISFH 244 Query: 252 SLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK F + G+ + +P + I K + + N RSRSA Sbjct: 245 SLEDRIVKLFMRKLAKGEADNMPRNLPIQYKAFEPKIKIHGKAQFASDVETKANPRSRSA 304 Query: 310 KLRAGMR 316 +R + Sbjct: 305 VMRVAEK 311 >gi|145639350|ref|ZP_01794956.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae PittII] gi|145271653|gb|EDK11564.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae PittII] gi|309751224|gb|ADO81208.1| 16S rRNA m(4)C1402 methyltranserfase [Haemophilus influenzae R2866] Length = 321 Score = 352 bits (904), Expect = 5e-95, Method: Composition-based stats. Identities = 121/325 (37%), Positives = 174/325 (53%), Gaps = 20/325 (6%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M+S + +H+ VLL + + L + +D TFG GG+SR +IA+D Sbjct: 1 MNSENSFSSSEHITVLLHEAVNGLALKENGIYIDGTFGRGGHSRFILSQLSSNGRLIAVD 60 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCG 121 RDP A++ + +F + +FS + + ++G++ DLGVSS Q+D Sbjct: 61 RDPRAIAEAHKI---QDSRFQIEHNSFSHIPEICDKLNLVGKINGILLDLGVSSPQLDEA 117 Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF K GPLDMRM + G+SA + + Q +++DLT +L GEE+ A RIA AIV Sbjct: 118 ERGFSFMKDGPLDMRMDTTQGLSAEEWLKQVSIEDLTWVLKTFGEERFAKRIATAIVDFN 177 Query: 181 QSAP------FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234 +SA T L+ LI + V F K+ HPATRSFQA+RIF+N+E++EL L S Sbjct: 178 KSAVKNGTEFLSRTSQLAELISQAVPF-KDKHKHPATRSFQAIRIFINSELDELESLLNS 236 Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS--ITKKV 292 A L G L ++SFHSLEDR+VK F +S + + Q I K Sbjct: 237 ALDMLAPEGRLSIISFHSLEDRMVKHFMKKQSKGEDIPKGLPLREDQIQRNQKLRIIGKA 296 Query: 293 VVPTQEDVAFNRRSRSAKLRAGMRT 317 + P+ ++ N RSRSA LR R Sbjct: 297 IQPSDAEIQANPRSRSAILRVAERI 321 >gi|251788242|ref|YP_003002963.1| S-adenosyl-methyltransferase MraW [Dickeya zeae Ech1591] gi|263446384|sp|C6CJW6|RSMH_DICZE RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|247536863|gb|ACT05484.1| S-adenosyl-methyltransferase MraW [Dickeya zeae Ech1591] Length = 313 Score = 352 bits (904), Expect = 5e-95, Method: Composition-based stats. Identities = 120/314 (38%), Positives = 174/314 (55%), Gaps = 19/314 (6%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72 H VLL++ + L+ + +D TFG GG+SR ++A+DRDP AV Sbjct: 3 ETFKHTTVLLDEAVNGLSIRSNGIYIDGTFGRGGHSRLILSHLGPEGRLLAIDRDPQAVE 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128 +FS+ FS+L +YV +G +DG++ DLGVSS Q+D +RGFSF Sbjct: 63 VANTI---DDARFSIIHGPFSELAEYVEARGLTGKIDGILLDLGVSSPQLDDPERGFSFM 119 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM + G SA+D + +A D+ +L GEE+ A RIA AIV+R + P Sbjct: 120 RDGPLDMRMDPTRGQSAADWLMKAEADDIAWVLKTFGEERFAKRIARAIVERNRIDPLTR 179 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T+ L+ LI + + HPATRSFQA+RI++N+E+EE+ + L A L GG L V Sbjct: 180 TKALAELIAAASPIREKYK-HPATRSFQAIRIYINSELEEIERALDGALTVLAPGGRLSV 238 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAF 302 +SFHSLEDR+VK+F S + + A +S+ K ++P ++VA Sbjct: 239 ISFHSLEDRIVKRFIRQHSRGPQVPAGLPLTEAQLRSQGGPTLKSVGK--MMPPDDEVAD 296 Query: 303 NRRSRSAKLRAGMR 316 N R+RS+ LR R Sbjct: 297 NPRARSSVLRFAER 310 >gi|332885960|gb|EGK06204.1| ribosomal RNA small subunit methyltransferase H [Dysgonomonas mossii DSM 22836] Length = 303 Score = 352 bits (904), Expect = 5e-95, Method: Composition-based stats. Identities = 108/306 (35%), Positives = 164/306 (53%), Gaps = 16/306 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H+PVLL + I +N P + +D TFG GG+SR ++ A D+D A+ Sbjct: 6 HIPVLLHESIDGMNIHPDSICVDVTFGGGGHSREILSRLGDKGHLYAFDQDEDAIKNI-- 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQK-SGP 132 + +F+ ++ F L++++ VDG ++ DLGVSS D DRGFSF+ Sbjct: 64 ---EPSNKFTFIRSNFRYLKNFIKYHNVDGVDAILADLGVSSHHFDAEDRGFSFRFEDSD 120 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ G +A+ ++N + L + + GE KQ+ RIA IVK R+ P++ T DL Sbjct: 121 LDMRMNRKGGKTAAQILNTYTEEKLADVFYLYGELKQSRRIASVIVKTRKEKPYKKTSDL 180 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + + V ++FQALRI VN E+E L + L A LK GG L V+++H Sbjct: 181 LATLNSFVGRG-EKEKKILAQAFQALRIEVNEEMEVLKEMLTQALDILKPGGRLSVITYH 239 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+VK FF + + + + + P F+ I KV+ P++++ N RSRSAKL Sbjct: 240 SLEDRIVKNFFKTGNFEGKVEKDFFGNFETP--FKLINNKVITPSKDEEERNPRSRSAKL 297 Query: 312 RAGMRT 317 R + Sbjct: 298 RVAEKV 303 >gi|116618594|ref|YP_818965.1| SAM-dependent methyltransferase for cell envelope biogenesis [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|122271206|sp|Q03W30|RSMH_LEUMM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|116097441|gb|ABJ62592.1| SAM-dependent methyltransferase for cell envelope biogenesis [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 312 Score = 352 bits (904), Expect = 5e-95, Method: Composition-based stats. Identities = 110/308 (35%), Positives = 166/308 (53%), Gaps = 10/308 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76 +HV VLL + IALL+ P +DAT G GG++ K + + D+D A+ E Sbjct: 4 EHVTVLLHEAIALLDIKPEGTYVDATLGGGGHTGEILKQLTTGTLYSFDQDDTAIQYNAE 63 Query: 77 TMRD--YKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 D + + F L + D GV DG+V+DLGVSS+Q D G RGFS++ Sbjct: 64 QYADEIAAGKLVIIHKNFRTLTSALADYGVTAVDGIVYDLGVSSVQFDDGQRGFSYKYDA 123 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM ++A +VN+ +L R+L GE++ +IA I + R++AP TT + Sbjct: 124 ELDMRMDQRQALTAKTIVNEWPFNELMRVLSRYGEDRFPKQIARKIEQHRENAPINTTFE 183 Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I++ + ++ HPA RSFQA RI VN+E+ L L A + L G + V++ Sbjct: 184 LVDIIKEAIPAPARRKGGHPAKRSFQAFRIAVNDELGALEDSLTQALELLATDGKISVIT 243 Query: 250 FHSLEDRLVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 F SLEDRLVK+ F +S + + A ++ +T+K + P+ E++A N R+ S Sbjct: 244 FQSLEDRLVKQMFREKSSAPELPAGLPVLPGQFEADYELLTRKPISPSTEEMAINHRAES 303 Query: 309 AKLRAGMR 316 AKLR R Sbjct: 304 AKLRGIRR 311 >gi|323343877|ref|ZP_08084104.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Prevotella oralis ATCC 33269] gi|323095696|gb|EFZ38270.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Prevotella oralis ATCC 33269] Length = 304 Score = 352 bits (904), Expect = 5e-95, Method: Composition-based stats. Identities = 108/304 (35%), Positives = 159/304 (52%), Gaps = 16/304 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H+PVLL++ I LN P V +D TFG GG+SR + + + D+D A Sbjct: 9 HIPVLLKESIDGLNIQPEGVYVDVTFGGGGHSREILRRLGKNGRLYSFDQDADAEQNIVA 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +F+ ++ F L++++ +D G++ DLGVSS D RGFSF+ + PL Sbjct: 69 -----DSRFTFVRSNFRYLKNWMRYYKIDHIDGLLADLGVSSHHFDDESRGFSFRFNAPL 123 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +G +A+D+VN+ + + L + + GE K + RIA AIVK R + TT+ Sbjct: 124 DMRMNKRAGTTAADIVNKYDEETLANVFYLYGELKNSRRIAAAIVKARATYEIGTTRAFI 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 I+ F + + FQALRI VN+E+ L + L A K L GG L ++++HS Sbjct: 184 DAIEPL--FKREREKKDMAKLFQALRIEVNHEMRALKEMLEGASKCLGTGGRLSIITYHS 241 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK +G V H F I KV+ P+ E+ N RSRSAKLR Sbjct: 242 LEDRMVKNMMR--TGNVEGKLHQDFYGHIETPFVLINSKVITPSHEEQEQNPRSRSAKLR 299 Query: 313 AGMR 316 + Sbjct: 300 IAEK 303 >gi|262280350|ref|ZP_06058134.1| S-adenosylmethionine-dependent methyltransferase [Acinetobacter calcoaceticus RUH2202] gi|262258128|gb|EEY76862.1| S-adenosylmethionine-dependent methyltransferase [Acinetobacter calcoaceticus RUH2202] Length = 307 Score = 352 bits (903), Expect = 5e-95, Method: Composition-based stats. Identities = 112/310 (36%), Positives = 172/310 (55%), Gaps = 16/310 (5%) Query: 20 HVPVLLEKVIA-LLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H+ VLL + I LL V +DATFG GG++R + V A D+DP A+ Sbjct: 3 HISVLLSETIESLLADRTTGVYIDATFGRGGHTRLLLSKLDENARVYAFDKDPQALEVA- 61 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 T+ +F++ A+F+ +++ + + GV DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 62 ATLAQEDSRFTIIHASFADIKEKMQEIGVMSVDGIMADLGVSSPQLDQAERGFSFMQDGP 121 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G++A++ + + + L ++ GEE+ + RIA AI +TT L Sbjct: 122 LDMRMDNSKGLTAAEWLLKIEEEQLANVIYQYGEERYSRRIAKAIKLA---GKLETTAQL 178 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +++ + ++ HPATR+FQA+RI +N E+E++ L A LK G L V+SFH Sbjct: 179 AEVVKTAHPKWEKHK-HPATRAFQAIRIAINKELEDIEVFLPQAVDLLKPEGRLSVISFH 237 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNA-HPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDRL+K+F S +P + I++ V ++E+V N RSRSA Sbjct: 238 SLEDRLIKQFIQKESTLAEDFGWGMPEQRVDTRRLKKISR--VRASEEEVKANPRSRSAW 295 Query: 311 LRAGMRTVER 320 LR R E+ Sbjct: 296 LRVAERLEEK 305 >gi|303246299|ref|ZP_07332579.1| S-adenosyl-methyltransferase MraW [Desulfovibrio fructosovorans JJ] gi|302492362|gb|EFL52234.1| S-adenosyl-methyltransferase MraW [Desulfovibrio fructosovorans JJ] Length = 326 Score = 352 bits (903), Expect = 6e-95, Method: Composition-based stats. Identities = 122/323 (37%), Positives = 175/323 (54%), Gaps = 11/323 (3%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAV 71 + H+PVLL++V+ L PG ILDAT G GG+ + + V+ LDRD A+ Sbjct: 2 QHVPTHIPVLLKEVVEYLGIRPGMKILDATAGLGGHIKGMLEAAGGQAEVLGLDRDREAL 61 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQ 128 + Y ++ L + +S+ + + G VD + D G+SS+Q+D +RGF F Sbjct: 62 EEAGRRLAAYGDRVRLVRTRYSRFPAALAEAGWEKVDAALVDAGMSSLQLDDPERGFGFL 121 Query: 129 KSGPLDMRMSCS--GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 GPLDMRM G SA +VN A+ L I+ GE+ QA RIA AIV R+ A Sbjct: 122 TDGPLDMRMGAEDGGESAEGLVNLASFARLREIIRNYGEDPQAGRIARAIVAAREKAAIT 181 Query: 187 TTQDLSSLIQKTVYFSKNN--RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 TT L+ ++ R HPATR+FQALR+ VN+E++EL L + + L GG Sbjct: 182 TTGRLAEVVAAAYPAKWRAMARQHPATRTFQALRMAVNDELKELEAFLAAVPEYLATGGR 241 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 + V+SFHSLEDRLVK+ F + + R ++ H A +TKK V+ +E+VA N Sbjct: 242 VAVISFHSLEDRLVKRAFRLEATDCLCPREQVVCVCGHKARLAILTKKPVMAGEEEVAAN 301 Query: 304 RRSRSAKLRAGMRTVERSIEDDS 326 R+RSAKLR R + + D+ Sbjct: 302 PRARSAKLRVARRLPDAAEATDA 324 >gi|313156840|gb|EFR56280.1| S-adenosyl-methyltransferase MraW [Alistipes sp. HGB5] Length = 368 Score = 352 bits (903), Expect = 6e-95, Method: Composition-based stats. Identities = 118/304 (38%), Positives = 167/304 (54%), Gaps = 16/304 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H PVLL++ + LL P +D TFG GG+SR + G + A D+D + + Sbjct: 70 HTPVLLKESVDLLAVDPAGTYVDLTFGGGGHSRRILEKLGPGGRLYAFDQDRDTRANCPD 129 Query: 77 TMRDYKEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +F ++ F L+ + + VDG++ DLGVSS D +RGFSF+ PL Sbjct: 130 -----DGRFHYVESNFRFLRGALRLREVEQVDGILADLGVSSHHFDAVERGFSFRGEAPL 184 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ G ++A+ VVN LTR+LG GE + +IA+ IV+ R++AP +TT L Sbjct: 185 DMRMNQRGALTAARVVNGYPADALTRLLGEWGELETPWKIANCIVRAREAAPIETTAQLV 244 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++ K + T+ FQALRI VN E+E L L + K L+ GG L+V+S+HS Sbjct: 245 EAVKPCTP--KKDESKFLTKLFQALRIEVNGEMEALKMALEQSLKVLRPGGRLVVISYHS 302 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDRLVK F S + + P F+ IT+K VVPT E++ N RSRSAKLR Sbjct: 303 LEDRLVKNFLRSGNFSGSVEKDFFGRALTP--FEIITRKAVVPTAEELERNPRSRSAKLR 360 Query: 313 AGMR 316 A + Sbjct: 361 AAAK 364 >gi|16273056|ref|NP_439288.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae Rd KW20] gi|145630229|ref|ZP_01786011.1| S-adenosyl-methyltransferase [Haemophilus influenzae R3021] gi|260580214|ref|ZP_05848044.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae RdAW] gi|260581821|ref|ZP_05849617.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae NT127] gi|1175483|sp|P45057|RSMH_HAEIN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|1574685|gb|AAC22785.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20] gi|144984510|gb|EDJ91933.1| S-adenosyl-methyltransferase [Haemophilus influenzae R3021] gi|260093498|gb|EEW77431.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae RdAW] gi|260095014|gb|EEW78906.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae NT127] Length = 321 Score = 352 bits (903), Expect = 6e-95, Method: Composition-based stats. Identities = 122/325 (37%), Positives = 174/325 (53%), Gaps = 20/325 (6%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M+S + +H+ VLL + + L + +D TFG GG+SR +IA+D Sbjct: 1 MNSENSFSSSEHITVLLHEAVNGLALKENGIYIDGTFGRGGHSRFILSQLSSNGRLIAVD 60 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCG 121 RDP A++ + +F + +FS + + +DG++ DLGVSS Q+D Sbjct: 61 RDPRAIAEAHKI---QDLRFQIEHNSFSHIPEICDKLNLVGKIDGILLDLGVSSPQLDEA 117 Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF K GPLDMRM + G+SA + + Q +++DLT +L GEE+ A RIA AIV Sbjct: 118 ERGFSFMKDGPLDMRMDTTQGLSAEEWLKQVSIEDLTWVLKTFGEERFAKRIATAIVDFN 177 Query: 181 QSAP------FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234 +SA T L+ LI + V F K+ HPATRSFQA+RIF+N+E++EL L S Sbjct: 178 KSAVKNGTEFLSRTSQLAELISQAVPF-KDKHKHPATRSFQAIRIFINSELDELESLLNS 236 Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS--ITKKV 292 A L G L ++SFHSLEDR+VK F +S + + Q I K Sbjct: 237 ALDMLAPEGRLSIISFHSLEDRMVKHFMKKQSKGEDIPKGLPLREDQIQRNQKLRIIGKA 296 Query: 293 VVPTQEDVAFNRRSRSAKLRAGMRT 317 + P+ ++ N RSRSA LR R Sbjct: 297 IQPSDAEIQANPRSRSAILRVAERI 321 >gi|262831548|sp|A9WRE6|RSMH_RENSM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 331 Score = 352 bits (903), Expect = 6e-95, Method: Composition-based stats. Identities = 120/326 (36%), Positives = 183/326 (56%), Gaps = 15/326 (4%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPAPGK--------VILDATFGAGGYSRSFCKMGS-- 59 ++ HVPVL ++ + LL PA V++DAT G GG+S + Sbjct: 3 TTPPPADAPRHVPVLRDRCVNLLAPAIEAANLAGRRAVVVDATLGMGGHSEAMLTRFENL 62 Query: 60 NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSM 116 ++I +DRD A+ ++ ++++ L A + ++ + + D G +DGV+ DLGVSS+ Sbjct: 63 HLIGIDRDTQALDLSGARLKPFEDRTDLVHAVYDEITEVLDDLGFESIDGVLMDLGVSSL 122 Query: 117 QIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175 Q+D +RGF++ PLDMRM S G SA+DVVN + +L I+ GEEK A RIA+ Sbjct: 123 QLDEAERGFAYSYDAPLDMRMDTSRGQSAADVVNSYSETELVSIIRRWGEEKFAGRIANR 182 Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRS 234 IV R PF T +L +I+K V + HPA R+FQALRI VN E+ L + + + Sbjct: 183 IVAARAEKPFAGTGELVEVIRKAVPAAAARTGGHPAKRTFQALRIEVNEELVVLERAVPA 242 Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVV 294 A AL GG +V+S+HSLED++VKKFF++ + ++ +++TK V Sbjct: 243 AVDALAIGGRAVVMSYHSLEDKIVKKFFSTGVTSSAPPGFPVELDSQKPELKTLTKGTEV 302 Query: 295 PTQEDVAFNRRSRSAKLRAGMRTVER 320 PT+ ++A N R+ SA+LRA R R Sbjct: 303 PTEAEIAENPRAASARLRAVERIRPR 328 >gi|172035001|ref|YP_001801502.1| S-adenosyl-methyltransferase MraW [Cyanothece sp. ATCC 51142] gi|263446171|sp|B1WZ70|RSMH_CYAA5 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|171696455|gb|ACB49436.1| putative methyltransferase [Cyanothece sp. ATCC 51142] Length = 315 Score = 352 bits (903), Expect = 6e-95, Method: Composition-based stats. Identities = 115/325 (35%), Positives = 168/325 (51%), Gaps = 31/325 (9%) Query: 1 MESKSCKTMSSAIHHTIGD----HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK 56 + S + M++ H + H PVL ++VI L P LDAT G GG+SR + Sbjct: 10 LSSVTLIVMTNTDHPNQPNPPHLHTPVLCQEVIDGLAIEPNGHYLDATLGRGGHSRLILE 69 Query: 57 MGSNVI--ALDRDPFAVSCGQETMRDYKE-QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 +V +D D A++ QE + + ++Q F+ + + +G++ DLGV Sbjct: 70 AFPDVRVTGIDLDEEAIAITQENFSLMGDKRLQVWQGNFADYPGEIGE--FNGIIADLGV 127 Query: 114 SSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRI 172 SS Q D +RGFSF+ PLDMRM+ ++A +++N + L + GEE+++ I Sbjct: 128 SSPQFDVPERGFSFRHQAPLDMRMNREQSLTAGEIINHWDQTSLADLFYQYGEERRSRAI 187 Query: 173 AHAIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQG 231 A +V++R PF+TT +L+ I K + RIHPATR FQALRI VN+E+ L + Sbjct: 188 ARRLVQQR---PFETTTELAEAIAKCFPPKQRYGRIHPATRVFQALRIAVNDELGSLERF 244 Query: 232 LRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKK 291 L A LK GG + ++SFHSLEDR VK F + ITKK Sbjct: 245 LEKAPHWLKPGGRIGIISFHSLEDRRVKYSFRDS-----------------LLLDVITKK 287 Query: 292 VVVPTQEDVAFNRRSRSAKLRAGMR 316 ++P E+ N RSRSAKLR R Sbjct: 288 PIIPQPEEEEKNPRSRSAKLRFAQR 312 >gi|319897403|ref|YP_004135600.1| s-adenosyl-dependent methyltransferase activity on membrane-located substrates [Haemophilus influenzae F3031] gi|317432909|emb|CBY81275.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Haemophilus influenzae F3031] Length = 321 Score = 352 bits (903), Expect = 6e-95, Method: Composition-based stats. Identities = 122/325 (37%), Positives = 174/325 (53%), Gaps = 20/325 (6%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M+S + +H+ VLL + + L + +D TFG GG+SR +IA+D Sbjct: 1 MNSENSFSSSEHITVLLHEAVNGLALKENGIYIDGTFGRGGHSRFILSQLSFNGRLIAVD 60 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCG 121 RDP A++ + +F + +FS + + +DG++ DLGVSS Q+D Sbjct: 61 RDPRAIAEAHKI---QDLRFQIEHNSFSHIPEICDKLNLVGKIDGILLDLGVSSPQLDEA 117 Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF K GPLDMRM + G+SA + + Q +++DLT +L GEE+ A RIA AIV Sbjct: 118 ERGFSFMKDGPLDMRMDTTQGLSAEEWLKQVSIEDLTWVLKTFGEERFAKRIATAIVDFN 177 Query: 181 QSAP------FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234 +SA T L+ LI + V F K+ HPATRSFQA+RIF+N+E++EL L S Sbjct: 178 KSAVKNSTEFLSRTSQLAELISQAVPF-KDKHKHPATRSFQAIRIFINSELDELESLLNS 236 Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS--ITKKV 292 A L G L ++SFHSLEDR+VK F +S + + Q I K Sbjct: 237 ALDMLAPEGRLSIISFHSLEDRMVKHFMKKQSKGEDIPKGLPLREDQIQRNQKLRIIGKA 296 Query: 293 VVPTQEDVAFNRRSRSAKLRAGMRT 317 + P+ ++ N RSRSA LR R Sbjct: 297 IQPSDAEIQANPRSRSAILRVAERI 321 >gi|282889763|ref|ZP_06298302.1| hypothetical protein pah_c004o134 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500337|gb|EFB42617.1| hypothetical protein pah_c004o134 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 310 Score = 352 bits (903), Expect = 6e-95, Method: Composition-based stats. Identities = 114/305 (37%), Positives = 170/305 (55%), Gaps = 8/305 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H VL+++VI +P ++ +D T GAGG+S + +IA+D+DP A++ E Sbjct: 5 HQSVLMKEVIESFSPCSLRIFIDGTAGAGGHSAALLATHPEIERLIAIDQDPLALTVAAE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + E+ + F L+ ++ VDG++ DLGVSSMQ+D ++GFSF K GPL Sbjct: 65 NLAPWSEKVTFVSGNFENLEKFLDQLEISTVDGILLDLGVSSMQLDIAEKGFSFSKEGPL 124 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + ++A+ VVN K+L RI GEE+ A AIV+ R TTQ L Sbjct: 125 DMRMDPRNPLTAAIVVNTWPQKELERIFRDYGEERHWRAAARAIVQARAEKQILTTQQLV 184 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +++ + F+ RIHP T FQALRI VN E++ + + + +A + LK GG L ++SFHS Sbjct: 185 EVLRPVLRFNPAKRIHPCTLVFQALRICVNKELDVVERVIPAAIRRLKKGGRLGIISFHS 244 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPS-NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LED +VK F + R + + +T+K +V E+VA N RSRSAKL Sbjct: 245 LEDGIVKNLFRHAASDKWDTRGLAGLFRDKDPEVRLLTRKPLVANDEEVAANPRSRSAKL 304 Query: 312 RAGMR 316 R + Sbjct: 305 RVLEK 309 >gi|68249679|ref|YP_248791.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae 86-028NP] gi|148826257|ref|YP_001291010.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae PittEE] gi|229846161|ref|ZP_04466273.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae 7P49H1] gi|81335891|sp|Q4QLG6|RSMH_HAEI8 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263456014|sp|A5UCX6|RSMH_HAEIE RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|68057878|gb|AAX88131.1| predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Haemophilus influenzae 86-028NP] gi|148716417|gb|ABQ98627.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae PittEE] gi|229811165|gb|EEP46882.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae 7P49H1] Length = 321 Score = 352 bits (903), Expect = 6e-95, Method: Composition-based stats. Identities = 122/325 (37%), Positives = 174/325 (53%), Gaps = 20/325 (6%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M+S + +H+ VLL + + L + +D TFG GG+SR +IA+D Sbjct: 1 MNSENSFSSSEHITVLLHEAVNGLALKENGIYIDGTFGRGGHSRFILSQLSSNGRLIAVD 60 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCG 121 RDP A++ + +F + +FS + + +DG++ DLGVSS Q+D Sbjct: 61 RDPRAIAEAHKI---QDLRFQIEHNSFSHIPEICDKLNLVGKIDGILLDLGVSSPQLDEA 117 Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF K GPLDMRM + G+SA + + Q +++DLT +L GEE+ A RIA AIV Sbjct: 118 ERGFSFMKDGPLDMRMDTTQGLSAEEWLKQVSIEDLTWVLKTFGEERFAKRIATAIVDFN 177 Query: 181 QSAP------FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234 +SA T L+ LI + V F K+ HPATRSFQA+RIF+N+E++EL L S Sbjct: 178 KSAVKNSTEFLSRTSQLAELISQAVPF-KDKHKHPATRSFQAIRIFINSELDELESLLNS 236 Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS--ITKKV 292 A L G L ++SFHSLEDR+VK F +S + + Q I K Sbjct: 237 ALDMLAPEGRLSIISFHSLEDRMVKHFMKKQSKGEDIPKGLPLREDQIQRNQKLRIIGKA 296 Query: 293 VVPTQEDVAFNRRSRSAKLRAGMRT 317 + P+ ++ N RSRSA LR R Sbjct: 297 IQPSDAEIQANPRSRSAILRVAERI 321 >gi|153874645|ref|ZP_02002785.1| Bacterial methyltransferase [Beggiatoa sp. PS] gi|152068890|gb|EDN67214.1| Bacterial methyltransferase [Beggiatoa sp. PS] Length = 339 Score = 352 bits (903), Expect = 6e-95, Method: Composition-based stats. Identities = 115/325 (35%), Positives = 169/325 (52%), Gaps = 24/325 (7%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72 + +H PVLL + + L + +D TFG GG++++ V+A D+DP AV Sbjct: 9 SQNEHQPVLLAEALKALTIYDDSIYIDCTFGRGGHTKAILNDLGPSGQVLAFDQDPEAVQ 68 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128 + + +F++ + F+QLQ V +G V+GV+ DLGVSS Q++ RGFSF Sbjct: 69 IA-KALCLTDNRFNIIYSPFTQLQQQVEKRGWLGQVNGVLLDLGVSSPQLNTPTRGFSFM 127 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 GPLDMRM+ SG S + +NQA+ ++ +L GEE+ A IA AIV R A +T Sbjct: 128 HDGPLDMRMNPNSGTSIGEWLNQADTDEIALVLKTYGEERHARHIAKAIVMARSKAELKT 187 Query: 188 TQDLSSLIQKT-VYFSKN--------------NRIHPATRSFQALRIFVNNEIEELAQGL 232 T L+ +I + + K HPAT++FQALRIF+N+E+E+L Q L Sbjct: 188 TCQLAEIISAVSIPYPKKMAHSSSSLKWGTQKKFKHPATQTFQALRIFINHELEQLQQVL 247 Query: 233 RSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV 292 A L GG L+V+SFHSLEDR+VK+F M + + K Sbjct: 248 PQALDVLAPGGRLVVISFHSLEDRIVKRFIRDCVRGDDFPPTMPITADQLSPSLLAIGKP 307 Query: 293 VVPTQEDVAFNRRSRSAKLRAGMRT 317 + PT + N R+RSA +R + Sbjct: 308 IKPTLAETQANPRARSAIMRVAEKI 332 >gi|302344989|ref|YP_003813342.1| S-adenosyl-methyltransferase MraW [Prevotella melaninogenica ATCC 25845] gi|302149179|gb|ADK95441.1| S-adenosyl-methyltransferase MraW [Prevotella melaninogenica ATCC 25845] Length = 314 Score = 351 bits (902), Expect = 7e-95, Method: Composition-based stats. Identities = 110/306 (35%), Positives = 169/306 (55%), Gaps = 13/306 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H+PVLL + I LN V +D TFG GG+SR S++ + D+D A Sbjct: 9 HIPVLLNESIEGLNLHANGVYVDVTFGGGGHSREILSRLAEDSHLYSFDQDADAEQNIDN 68 Query: 77 --TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + ++F+ ++ F L++++ V DG++ DLGVSS D RGFSF+ Sbjct: 69 MGLSDEQVDRFTFVRSNFRYLKNWMRYYDVGYIDGLLADLGVSSHHFDDETRGFSFRFEA 128 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ +GI+A+D++N + + L IL + GE KQ+ RIA AIVK R ++TT D Sbjct: 129 PLDMRMNKRAGITAADILNDYDEERLADILYLYGELKQSRRIASAIVKARGQKTYKTTND 188 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L + I+ +F + + FQALRI VN+E++ L + L +A + L+ GG L V+++ Sbjct: 189 LLTTIEP--FFQRAREKKDMAKMFQALRIEVNHEMDALKEMLMAATELLRPGGRLSVITY 246 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDR+VK S + + + P F+ + KV+ + ++ N RSRSAK Sbjct: 247 HSLEDRMVKNIMKSGNIEGKVKQDFFGRIETP--FRLVNNKVITASNDEQERNPRSRSAK 304 Query: 311 LRAGMR 316 LR + Sbjct: 305 LRIAEK 310 >gi|58698054|ref|ZP_00372978.1| S-adenosyl-methyltransferase MraW [Wolbachia endosymbiont of Drosophila ananassae] gi|225629940|ref|YP_002726731.1| S-adenosyl-methyltransferase [Wolbachia sp. wRi] gi|254813210|sp|C0R598|RSMH_WOLWR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|58535411|gb|EAL59486.1| S-adenosyl-methyltransferase MraW [Wolbachia endosymbiont of Drosophila ananassae] gi|225591921|gb|ACN94940.1| S-adenosyl-methyltransferase [Wolbachia sp. wRi] Length = 293 Score = 351 bits (902), Expect = 7e-95, Method: Composition-based stats. Identities = 125/302 (41%), Positives = 183/302 (60%), Gaps = 18/302 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQETM 78 H PVLL+++++LL+P G + +DATFGAGGYS++ + V A+DRD + Sbjct: 3 HTPVLLKEMLSLLSPQDGGIYVDATFGAGGYSKAILESADCKVYAIDRDETVTKFYDDLS 62 Query: 79 RDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 Y ++ LF FS +++ + G+DG+VFD+GVSSMQ+D GDRGFSF GPLDM Sbjct: 63 VRYPDRIKLFIEKFSNIKNLLDSNNIEGIDGIVFDIGVSSMQLDNGDRGFSFLHDGPLDM 122 Query: 136 RMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 M S I+AS VN +++ + G E+ + +IA AIV R+ +TT +L+ + Sbjct: 123 SMDNSSYINASTFVNALREEEIANTIYNYGGERHSRKIARAIVNARKKKTIKTTFELADI 182 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 ++ V+ K ++I PATR+FQA+RI+VN+E+ EL +G+++A + L G LIVV+FHSLE Sbjct: 183 VRSVVFRGK-SKIDPATRTFQAIRIWVNDELGELEKGIKAASEILSENGKLIVVTFHSLE 241 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 DR+VK FF F + KKV+ + E+V+ N RSRSAKLRA Sbjct: 242 DRIVKTFFKDLCATDC------------KTFSLLNKKVIEASIEEVSANPRSRSAKLRAI 289 Query: 315 MR 316 R Sbjct: 290 QR 291 >gi|261401195|ref|ZP_05987320.1| S-adenosyl-methyltransferase MraW [Neisseria lactamica ATCC 23970] gi|269208876|gb|EEZ75331.1| S-adenosyl-methyltransferase MraW [Neisseria lactamica ATCC 23970] Length = 319 Score = 351 bits (902), Expect = 7e-95, Method: Composition-based stats. Identities = 120/324 (37%), Positives = 171/324 (52%), Gaps = 13/324 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 MS ++ H+ VL + + L V +D TFG GG+SR ++ D Sbjct: 1 MSETENY---RHITVLPYEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLVVFD 57 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGD 122 +DP AV+ +E + ++ S+ F+ Q + D G VDG +FDLGVSS QID Sbjct: 58 KDPRAVAAAEE-LARSDKRVSVVHGGFASFQTALDDLGIGDVDGALFDLGVSSPQIDDAA 116 Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF+ PLDMRM + G+SA++ + A+ +DL ++ GEE+ + +IA AIV +R Sbjct: 117 RGFSFRFDAPLDMRMDTTRGMSAAEWIASASEQDLHEVIKNYGEERFSRQIARAIVAQRA 176 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 P TT+ L+ L + V + + PATR+FQA+RIF+N E+EE+ L LK Sbjct: 177 ENPIDTTRKLAQLAAQNVRTRERGQ-DPATRTFQAVRIFINRELEEVEAVLPQVMCRLKQ 235 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDV 300 GG L V++FHSLEDR+VK+F S R A P I K + P +V Sbjct: 236 GGRLAVIAFHSLEDRIVKQFVGKYSRHAPLPRWAAVREADLPEPPLKIVGKALKPGGAEV 295 Query: 301 AFNRRSRSAKLRAGMRTVERSIED 324 A N R+RSA LR RT + Sbjct: 296 AANPRARSAVLRVAERTAGPIPAE 319 >gi|186685061|ref|YP_001868257.1| S-adenosyl-methyltransferase MraW [Nostoc punctiforme PCC 73102] gi|262824674|sp|B2J183|RSMH_NOSP7 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|186467513|gb|ACC83314.1| S-adenosyl-methyltransferase MraW [Nostoc punctiforme PCC 73102] Length = 298 Score = 351 bits (902), Expect = 7e-95, Method: Composition-based stats. Identities = 112/310 (36%), Positives = 167/310 (53%), Gaps = 26/310 (8%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFA 70 + H+ VL +VI L PG LD T G GG+SR + ++V A+D+D A Sbjct: 11 LEELAFSHISVLGREVIEGLAVRPGGHYLDVTVGGGGHSRLILEAAADVRVTAVDQDEDA 70 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + + +Y ++ + F+ + P DG++ DLGVSS +D +RGFSF+++ Sbjct: 71 LVAANKNLAEYSDRIQFIYSNFADYE--FPPNTFDGILADLGVSSYHLDQAERGFSFRQA 128 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM ++A+DV+N + +L I GEE+ + RIA IV+RR P TT Sbjct: 129 ANLDMRMDRGRSLTAADVINNWDEAELADIFFKYGEERLSRRIARRIVERR---PLHTTT 185 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ I +V + RIHPATR FQALRI VN+E++ L L A AL GG + ++ Sbjct: 186 ELADAIASSVPPKYRYGRIHPATRVFQALRIVVNDELKSLETFLDKAPNALVPGGRIAII 245 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDR VK + + + +TKK ++ +E+++ N RSRS Sbjct: 246 SFHSLEDRPVKHGLRNS-----------------PLLKVLTKKPIIAQEEEISNNPRSRS 288 Query: 309 AKLRAGMRTV 318 AKLR + V Sbjct: 289 AKLRIAEKLV 298 >gi|302550804|ref|ZP_07303146.1| MraW methylase [Streptomyces viridochromogenes DSM 40736] gi|302468422|gb|EFL31515.1| MraW methylase [Streptomyces viridochromogenes DSM 40736] Length = 318 Score = 351 bits (902), Expect = 8e-95, Method: Composition-based stats. Identities = 125/310 (40%), Positives = 185/310 (59%), Gaps = 10/310 (3%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 HVPV+L++ + LL PA PG V++D T G GG+S + + ++ALDRD A+ Sbjct: 6 HVPVMLQRCLDLLAPALEGPGPVVVDCTLGLGGHSEALLERFPEARLVALDRDKEALRLA 65 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E + Y E+ +L A + +L + + G V GV+FDLGVSSMQ+D DRGF++ + Sbjct: 66 GERLAPYGERATLVHAVYDELPEVLDKLGIRRVQGVLFDLGVSSMQLDEADRGFAYAQDA 125 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + G+SA++V+N +L RIL GEEKQA RI AIV+ R+ PF + Sbjct: 126 PLDMRMDQTTGVSAAEVLNTYPPGELVRILRAYGEEKQAKRIVAAIVREREKEPFSNSAR 185 Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L LI+ + +K +PA R+FQALRI VN E+ L + + +A +AL GG + V+S Sbjct: 186 LVELIRDALPQAAKRTGGNPAKRTFQALRIEVNGELAVLERAVPAAVEALDVGGRIAVLS 245 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 +HSLEDRLVK+ FA+ + + + + +T+ +PT+E++A NRR+ A Sbjct: 246 YHSLEDRLVKQVFAAGAATTAPPGLPVVPERYQPRLKLLTRGAELPTEEEIAENRRAAPA 305 Query: 310 KLRAGMRTVE 319 +LR R E Sbjct: 306 RLRGAQRIRE 315 >gi|226943445|ref|YP_002798518.1| S-adenosyl-methyltransferase MraW [Azotobacter vinelandii DJ] gi|263446785|sp|C1DQ91|RSMH_AZOVD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|226718372|gb|ACO77543.1| S-adenosyl-methyltransferase MraW [Azotobacter vinelandii DJ] Length = 313 Score = 351 bits (902), Expect = 8e-95, Method: Composition-based stats. Identities = 116/308 (37%), Positives = 175/308 (56%), Gaps = 14/308 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H+ VLLE+ + L+ G LD TFG GG+SR G ++ D+DP AV+ G Sbjct: 7 HITVLLEEAVDALSIREGGCYLDGTFGRGGHSRLILGRLGAGGILLGFDKDPQAVAAGLA 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F + Q +F++L D + +G V GV+ DLGVSS Q+D +RGFSF GP Sbjct: 67 -LATEDARFVIVQRSFAELADEMKMRGLVGKVSGVLLDLGVSSPQLDDPERGFSFLNDGP 125 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM G+SA++ + QA+ +++ + GEE+ A R+A A+V+RRQ PF+ T DL Sbjct: 126 LDMRMDPGRGLSAAEWLAQASCEEIAHVFKDYGEERFARRMAQAVVQRRQERPFERTADL 185 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ + + +PATR+FQ LRI +NNE+ +L QGL +A + L+ GG L V+SFH Sbjct: 186 AQVLAAANPAWEKGK-NPATRAFQGLRIHINNELGDLEQGLDAALEVLEVGGRLAVISFH 244 Query: 252 SLEDRLVKKFFA---SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SLEDR+VK+F + I A + I K ++ ++ N R+RS Sbjct: 245 SLEDRIVKRFMRRQVKGEADKLPRDLPIRPAAFEPRLKLI-GKPRYASESELKTNPRARS 303 Query: 309 AKLRAGMR 316 A +R + Sbjct: 304 AIMRVAEK 311 >gi|156741091|ref|YP_001431220.1| S-adenosyl-methyltransferase MraW [Roseiflexus castenholzii DSM 13941] gi|262826161|sp|A7NIA2|RSMH_ROSCS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|156232419|gb|ABU57202.1| S-adenosyl-methyltransferase MraW [Roseiflexus castenholzii DSM 13941] Length = 312 Score = 351 bits (901), Expect = 9e-95, Method: Composition-based stats. Identities = 113/305 (37%), Positives = 168/305 (55%), Gaps = 22/305 (7%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 H PVLL + +A L P PG +D T G GG++ + + ++ +D DP A++ Sbjct: 22 HHTPVLLTETLAGLQPHPGGWYIDGTVGGGGHAAAILEATAPDGRLLGIDCDPAALAAAA 81 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + Y E+ +L + +F ++ G V GV+ DLGVSS Q+D +RGFSFQ S P Sbjct: 82 ARLAPYGERVTLVRGSFREIGRLAHKAGFVQVQGVLLDLGVSSYQLDTPERGFSFQASAP 141 Query: 133 LDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMR+ +A+++VN +DL ++ EE+ + RIA AIV+ RQ P TT +L Sbjct: 142 LDMRLDPDAPMTAANLVNDLPERDLADLIFRYSEERGSRRIARAIVEARQRRPITTTDEL 201 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ + + + RIHPATR+FQALRI VN+E+ L L + L GG + +++FH Sbjct: 202 AEIVSRAL-GGRRGRIHPATRTFQALRIAVNDELTSLDAALPQIVELLVVGGRMAIITFH 260 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+VK+F + A + IT+K V + E+ N RSRSAKL Sbjct: 261 SLEDRIVKQFMR--------------AEAQAGHLRLITRKPVEASSEEQRINPRSRSAKL 306 Query: 312 RAGMR 316 R R Sbjct: 307 RVAER 311 >gi|237799282|ref|ZP_04587743.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022138|gb|EGI02195.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv. oryzae str. 1_6] Length = 313 Score = 351 bits (901), Expect = 9e-95, Method: Composition-based stats. Identities = 112/307 (36%), Positives = 174/307 (56%), Gaps = 12/307 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H+ VLLE+ + L LD TFG GG+SR ++ D+DP A++ GQ Sbjct: 7 HITVLLEEAVEALAVRADGCYLDGTFGRGGHSRLILSHLGPDGRLLGFDKDPQAIATGQA 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F + Q +F++L ++ V G++ DLGVSS Q+D +RGFSF GP Sbjct: 67 -LAAEDGRFVIVQRSFAELGSEALERDLAGKVSGILLDLGVSSPQLDDPERGFSFMNDGP 125 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G+SA++ + A +++ R+ GEE+ A R+A+A+V+RR+ PF+ T DL Sbjct: 126 LDMRMDPTRGVSAAEFIASAPAEEIARVFKEYGEERFAKRMANAVVQRREIQPFERTADL 185 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +++ + + +PATR+FQ LRI VNNE+ +L GL +A +AL+ GG L+V+SFH Sbjct: 186 AEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAAMEALEVGGRLVVISFH 244 Query: 252 SLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK F + G+ + +P + I K + + N RSRSA Sbjct: 245 SLEDRIVKLFMRKLAKGEADNMPRNLPIQYKAFEPKIKIHGKAQFASDTETKANPRSRSA 304 Query: 310 KLRAGMR 316 +R + Sbjct: 305 VMRVAEK 311 >gi|146299563|ref|YP_001194154.1| S-adenosyl-methyltransferase MraW [Flavobacterium johnsoniae UW101] gi|189082215|sp|A5FIX6|RSMH_FLAJ1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|146153981|gb|ABQ04835.1| S-adenosyl-methyltransferase MraW [Flavobacterium johnsoniae UW101] Length = 302 Score = 351 bits (901), Expect = 1e-94, Method: Composition-based stats. Identities = 107/316 (33%), Positives = 171/316 (54%), Gaps = 21/316 (6%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 M++ + + H PVLL + L+ P + +D TFG GG+S+ + + A D Sbjct: 1 MTTTMEY----HNPVLLHPTVDGLDIKPDGIYVDVTFGGGGHSKEILRRLGPNGKLFAFD 56 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGD 122 +D A++ E+F+L F ++ ++ G VDG++ DLGVSS Q D + Sbjct: 57 QDEDALANAL-----PDERFTLINENFRFIKRFLRFHGIKAVDGILADLGVSSHQFDVPE 111 Query: 123 RGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFS + LDMRMS + ++A VVN+ +DL R+ GE K A +A IV+ R Sbjct: 112 RGFSTRFDAELDMRMSQKNDLNAYRVVNEYEEQDLRRVFFDYGELKNAPVLARTIVEARH 171 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 P +TT +L +++K + N+I + +QA+RI VN E++ L + + + + LK Sbjct: 172 HRPIKTTDELKEVLKKYLPEKVRNKI--LAQIYQAIRIEVNQEMDVLKEFIEQSLEILKP 229 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 GG V+S+HSLEDRLVK+F + + R + + P F++I K++VP E++ Sbjct: 230 GGRFSVISYHSLEDRLVKRFIKNGMFEGEPERDFYGNFSVP--FKTI-GKLIVPDDEEIK 286 Query: 302 FNRRSRSAKLRAGMRT 317 N R+RSAKLR + Sbjct: 287 INNRARSAKLRIAEKI 302 >gi|290961148|ref|YP_003492330.1| SAM-dependent methyltransferase [Streptomyces scabiei 87.22] gi|260650674|emb|CBG73790.1| putative SAM-dependent methyltransferase [Streptomyces scabiei 87.22] Length = 318 Score = 351 bits (901), Expect = 1e-94, Method: Composition-based stats. Identities = 125/310 (40%), Positives = 183/310 (59%), Gaps = 10/310 (3%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 HVPV+L++ + +L PA PG V++D T G GG+S + ++ALDRD A+ Sbjct: 6 HVPVMLQRCLDMLAPALTEPGAVVVDCTLGLGGHSEALLTRFPEARLVALDRDKEALRLS 65 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E + + E+ +L A + +L + + G V GV+FDLGVSSMQ+D DRGF++ + Sbjct: 66 GERLAPFGERATLVHAVYDELPEVLDRLGLPRVQGVLFDLGVSSMQLDEADRGFAYAQDA 125 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + GI A++V+N +L RIL GEEKQA RI AIV+ R PF + Sbjct: 126 PLDMRMDQTTGIGAAEVLNTYPAGELVRILRAYGEEKQAKRIVSAIVRERDKEPFTNSAR 185 Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L LI+ ++ +K +PA R+FQALRI VN E+ L + + +A KAL GG + V+S Sbjct: 186 LVELIRDSLPQAAKRTGGNPAKRTFQALRIEVNGELTVLERAVPAAVKALAVGGRIAVLS 245 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 +HSLEDRLVK+ FA+ + + + + +T+ +PT+E+VA NRR+ A Sbjct: 246 YHSLEDRLVKQVFAAGAAVTAPPGLPVVPERYQPRLKLLTRGAELPTEEEVAENRRAAPA 305 Query: 310 KLRAGMRTVE 319 +LR R E Sbjct: 306 RLRGAERVRE 315 >gi|303258244|ref|ZP_07344251.1| S-adenosyl-methyltransferase MraW [Burkholderiales bacterium 1_1_47] gi|331001080|ref|ZP_08324711.1| S-adenosyl-methyltransferase MraW [Parasutterella excrementihominis YIT 11859] gi|302858997|gb|EFL82081.1| S-adenosyl-methyltransferase MraW [Burkholderiales bacterium 1_1_47] gi|329569385|gb|EGG51163.1| S-adenosyl-methyltransferase MraW [Parasutterella excrementihominis YIT 11859] Length = 322 Score = 351 bits (901), Expect = 1e-94, Method: Composition-based stats. Identities = 120/315 (38%), Positives = 177/315 (56%), Gaps = 16/315 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H PVL E+ LL P V +D TFG GG+SR + +IA DRD AV + Sbjct: 8 HRPVLAEESPRLLVTDPNGVYVDGTFGRGGHSRLILEKLSPQGRLIAFDRDEEAVKAAAQ 67 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +F + A F+ +++ + G+D G+ D+GVSS QID +RGFSF+ GPL Sbjct: 68 I---QDPRFQIIHAPFASMKEELAKIGIDKVTGIFLDIGVSSPQIDDPERGFSFRFDGPL 124 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S G +A++ + +A+ ++ ++ LGEE+ A + A AI K R P T+ L+ Sbjct: 125 DMRMDTSAGETAAEWIARADAAEMAKVFKDLGEERFAMKAAKAIEKVRTKEPILRTKQLA 184 Query: 193 SLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 LI T+ +K + HPATR FQA+RI VN E+E+L + L SA L GG+L V+SFH Sbjct: 185 DLIAATLPRNKKDSAQHPATRIFQAIRIHVNQELEQLKRALESAGSLLLPGGVLAVISFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVR---HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SLEDR+VKKFF + + + ++PS +F + ++P++++ N R+RS Sbjct: 245 SLEDRIVKKFFEAAANPASCIDPRLPLLPSQLPQPLFNRAVR--ILPSEKECEENPRARS 302 Query: 309 AKLRAGMRTVERSIE 323 + LR RT E Sbjct: 303 SVLRGASRTDAPWPE 317 >gi|77414796|ref|ZP_00790918.1| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae 515] gi|77159158|gb|EAO70347.1| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae 515] Length = 298 Score = 351 bits (900), Expect = 1e-94, Method: Composition-based stats. Identities = 96/298 (32%), Positives = 156/298 (52%), Gaps = 10/298 (3%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDYKE--QF 85 +L+ P + +DAT G G+S ++ A D+D A+ ++ Y + Q Sbjct: 1 MLDIKPDGIYVDATLGGAGHSEYLLSQLGPDGHLYAFDQDQKAIDNAHIRLKKYVDTGQV 60 Query: 86 SLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-G 141 + + F L + GV +G+ +DLGVSS Q+D +RGFS+++ PLDMRM+ Sbjct: 61 TFIKDNFRNLSSNLKALGVSEINGICYDLGVSSPQLDERERGFSYKQDAPLDMRMNREQS 120 Query: 142 ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYF 201 ++A DVVN + DL RI GE+K + +IA I + R P TT +L+ +I+ + Sbjct: 121 LTAYDVVNTYSYHDLVRIFFKYGEDKFSKQIARKIEQVRAEKPISTTTELAEIIKSSKSA 180 Query: 202 SK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKK 260 + + HPA + FQA+RI VN+E+ + ++ A L G + V++FHSLEDRL K+ Sbjct: 181 KELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDLLAVDGRISVITFHSLEDRLTKQ 240 Query: 261 FFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318 F S + + + + +K ++P+QE++ N R+ SAKLR R Sbjct: 241 LFKEASTVEVPKGLPFIPDDLQPKMELVNRKPILPSQEELEANNRAHSAKLRVARRIR 298 >gi|209696060|ref|YP_002263990.1| S-adenosyl-methyltransferase MraW [Aliivibrio salmonicida LFI1238] gi|263446678|sp|B6ELI3|RSMH_ALISL RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|208010013|emb|CAQ80336.1| S-adenosyl-methyltransferase MraW [Aliivibrio salmonicida LFI1238] Length = 316 Score = 351 bits (900), Expect = 1e-94, Method: Composition-based stats. Identities = 124/314 (39%), Positives = 170/314 (54%), Gaps = 22/314 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 HV VLL + I L P + +D TFG GG+SR + ++DRDP A++ + Sbjct: 7 HVSVLLHESIDGLAIKPDGIYIDGTFGRGGHSRQILSRLGENGRLYSIDRDPQAIAEAKT 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +F++ FS L+ YV + G +DGV+ DLGVSS Q+D DRGFSF K GP Sbjct: 67 I---TDPRFNIIHGPFSGLKGYVEELGLVGQIDGVLLDLGVSSPQLDDADRGFSFMKDGP 123 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR---QSAPFQTT 188 LDMRM SG+ S + A+V+D+T ++ GE+K A RIA IV R ++ P T Sbjct: 124 LDMRMDPTSGMPVSQWLLTADVEDITWVIREFGEDKHAWRIAKGIVAYRDNEENEPLTRT 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ LI + + HPATR+FQA RI++N+E++E+ L A GG L V+ Sbjct: 184 GQLAKLISDVAPKNFKEKKHPATRTFQAFRIYINSELDEIDTALNGALDVFAEGGRLSVI 243 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHP------AVFQSITKKVVVPTQEDVAF 302 SFHSLEDR+VK F S + V H IP + A + I K + PT +V Sbjct: 244 SFHSLEDRMVKHFIRKES-RGPQVPHGIPLTENQIKALGSAKMKPI-GKAIKPTVNEVDV 301 Query: 303 NRRSRSAKLRAGMR 316 N RSRS+ LR R Sbjct: 302 NVRSRSSVLRIAER 315 >gi|262373648|ref|ZP_06066926.1| MraW methylase [Acinetobacter junii SH205] gi|262311401|gb|EEY92487.1| MraW methylase [Acinetobacter junii SH205] Length = 306 Score = 351 bits (900), Expect = 1e-94, Method: Composition-based stats. Identities = 108/310 (34%), Positives = 170/310 (54%), Gaps = 16/310 (5%) Query: 20 HVPVLLEKVIAL-LNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H+ VLL + + L + +DATFG GG+++ + V A D+DP A+ Sbjct: 3 HISVLLHETVDGVLAGRDTGIYVDATFGRGGHTKLLLSKLDQNARVYAFDKDPQALEVAA 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + +F + A+F+ LQ + + G VDGV+ DLGVSS Q+D +RGFSF ++GP Sbjct: 63 Q-LEQEDPRFKIIHASFADLQSELANIGITEVDGVMADLGVSSPQLDQAERGFSFMQNGP 121 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G +A++ + + + L I+ GEE+ + RIA AI + TT L Sbjct: 122 LDMRMDNSKGPTAAEWLLEIEEEKLANIIYQYGEERYSRRIAKAIKQA---GELTTTAQL 178 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + L++ + ++ HPATR+FQA+RI +N E+E++ L A + LK G L V+SFH Sbjct: 179 AELVKTAHPKWEKHK-HPATRTFQAIRIAINRELEDIEIFLPQAVELLKPKGQLAVISFH 237 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDRL+K+F S +P + + +++ + ++ +V N RSRSA Sbjct: 238 SLEDRLIKQFIQKESTLAEDTGWGMPQAQIDTRRLKKVSR--IRASEAEVKANPRSRSAW 295 Query: 311 LRAGMRTVER 320 LR R ++ Sbjct: 296 LRVAERLEKK 305 >gi|95930740|ref|ZP_01313473.1| methyltransferase [Desulfuromonas acetoxidans DSM 684] gi|95133220|gb|EAT14886.1| methyltransferase [Desulfuromonas acetoxidans DSM 684] Length = 318 Score = 351 bits (900), Expect = 1e-94, Method: Composition-based stats. Identities = 126/306 (41%), Positives = 179/306 (58%), Gaps = 9/306 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H VL + + LL+ G +LD T G G+SR + + +I LDRD A++ G E Sbjct: 8 HQSVLPTETLELLDLHAGDTVLDGTLGGAGHSRLILEATAPNGVLIGLDRDHDALANGAE 67 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + Y ++ L A F+ V + G+DG ++ DLGVSS Q+D +RGFSF+ PL Sbjct: 68 VLAAYGDRVILRHANFADANQVVEELGLDGLNGMLLDLGVSSYQLDQAERGFSFRADAPL 127 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM G +A+DVVN A V++LT I GEE+ A RIA I + RQ P TT L+ Sbjct: 128 DMRMDQQGDETAADVVNTATVEELTLIFKKYGEERWAGRIARRIERIRQQTPITTTFQLA 187 Query: 193 SLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 L+++TV + RIHPATR FQALRI VN+E++ +A+G+ LK GG+L V+SFH Sbjct: 188 ELVKETVPGGRVPARIHPATRVFQALRIRVNDELDSVAKGVEQGIGLLKPGGVLAVISFH 247 Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK F R+ + + + A + +T++ V ++ ++A N RSRSA Sbjct: 248 SLEDRIVKNIFRHRASPCVCPPRLPMCACGKKADVEVLTRRGVRASETEIAENPRSRSAV 307 Query: 311 LRAGMR 316 LRA R Sbjct: 308 LRAVRR 313 >gi|110639131|ref|YP_679340.1| S-adenosyl-methyltransferase MraW [Cytophaga hutchinsonii ATCC 33406] gi|122966614|sp|Q11RG6|RSMH_CYTH3 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|110281812|gb|ABG59998.1| S-adenosylmethionine methyltransferase [Cytophaga hutchinsonii ATCC 33406] Length = 298 Score = 351 bits (900), Expect = 1e-94, Method: Composition-based stats. Identities = 113/303 (37%), Positives = 168/303 (55%), Gaps = 14/303 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77 HVPVLL++ + LN P + +D TFG GG+SR K G + A D+D AV ++ Sbjct: 3 HVPVLLKESVEGLNINPEGIYVDVTFGGGGHSREILKHLKGGKLYAFDQDADAVDNAKDL 62 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + F+L A F ++ Y+ GVD G++ DLG+SS QID +RGFS + PLD Sbjct: 63 I---GPNFTLIPANFRYIKKYLRLNGVDKVDGLLGDLGISSHQIDTPERGFSIRYDAPLD 119 Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM + +A+D++N+ + L ILG+ GE + A +A A+VK R + P T +L Sbjct: 120 MRMDRAIDKTAADIINKYSEHGLHSILGMYGEVRNAKTLAQALVKERINKPINRTSELIE 179 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 ++ K ++ + FQALRI VN E+E L L +++ LK+GG L ++S+HSL Sbjct: 180 VLSDYAPRGKESK--YYAQVFQALRIEVNEELEALKDLLEQSQQVLKSGGRLSIISYHSL 237 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 EDRLVK F A + + + P F+S+ K + P E+ N R+RSA+LR Sbjct: 238 EDRLVKNFVQQGKFHGDAEKDLYGNTNKP--FKSV-GKAIDPDDEEKERNNRARSARLRI 294 Query: 314 GMR 316 R Sbjct: 295 AER 297 >gi|254787005|ref|YP_003074434.1| S-adenosyl-methyltransferase MraW [Teredinibacter turnerae T7901] gi|262825811|sp|C5BP42|RSMH_TERTT RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|237684519|gb|ACR11783.1| SAM-dependent methyltransferase MraW [Teredinibacter turnerae T7901] Length = 311 Score = 350 bits (899), Expect = 1e-94, Method: Composition-based stats. Identities = 109/308 (35%), Positives = 172/308 (55%), Gaps = 14/308 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H VLL++ + L V +D TFG GG+SR+ + ++A D+DP AV+ G+E Sbjct: 6 HYSVLLKESVDALVTNADGVYIDGTFGRGGHSRAVLQKLSPQGRLLAFDKDPEAVAYGRE 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVP------DKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + +FS+ +F + + + + GV+ DLGVSS Q+D +RGFSF Sbjct: 66 -LAGSDNRFSMVHDSFVNMASHWASAAHANNWSLSGVLLDLGVSSPQLDQAERGFSFMHD 124 Query: 131 GPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 GPLDMRM SG +A++ +N A +L ++ GEE+ A R+A AIV R+ +P T Sbjct: 125 GPLDMRMDNSSGQTAAEWINTAEESELAFVIKEYGEERFARRMARAIVAEREKSPITQTL 184 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L++++ + HPATR+FQA+RIF+N E+++L L + + L +GG L+V+S Sbjct: 185 RLANIVSEANP-KWEKGKHPATRAFQAIRIFINRELDDLTATLAQSLEMLPSGGRLVVIS 243 Query: 250 FHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK+F ++ GK + + + +++ K ++A N RSRS Sbjct: 244 FHSLEDRIVKRFMRDQARGKQFPIGMPVTEDMLEKKLKTL-GKAQRAGDRELAENIRSRS 302 Query: 309 AKLRAGMR 316 A LR + Sbjct: 303 ATLRVAEK 310 >gi|323137901|ref|ZP_08072976.1| S-adenosyl-methyltransferase MraW [Methylocystis sp. ATCC 49242] gi|322396904|gb|EFX99430.1| S-adenosyl-methyltransferase MraW [Methylocystis sp. ATCC 49242] Length = 346 Score = 350 bits (899), Expect = 2e-94, Method: Composition-based stats. Identities = 157/325 (48%), Positives = 203/325 (62%), Gaps = 8/325 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQ 75 HVPVLL +VI L P PG LDATFGAGGY+R+ + V+ALDRDP AV G+ Sbjct: 16 AARHVPVLLREVIDALRPTPGGRYLDATFGAGGYTRAILAHPETRVLALDRDPNAVRDGR 75 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + + +L +A FSQL + +G DGVVFD+GVSSMQ D +RGFSF+ GP Sbjct: 76 PLVEVARGRLTLVEARFSQLDEVARARGFAPLDGVVFDIGVSSMQFDEAERGFSFRGDGP 135 Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 LDMRM G +A+D+VN+A+ + L IL GEE+ A RIA AIV R+ APF +T+ L+ Sbjct: 136 LDMRMEGRGQTAADIVNEADEETLADILYFYGEERAARRIARAIVHDRKLAPFASTRALA 195 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I + + IHPAT+SFQALRI VN+E+ EL GL AE+AL GG L VV+FHS Sbjct: 196 EMIARVAP-GRPGDIHPATKSFQALRIAVNDELGELLDGLAGAERALAEGGRLAVVTFHS 254 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI--TKKVVVPTQEDVAFNRRSRSAK 310 LEDR+VK+FFA R G+ +P A P I ++ V PT+E+ N R+RSAK Sbjct: 255 LEDRIVKQFFAERCGRGETGSRRLPGEAAPPPRSFICEGRQPVAPTREETERNPRARSAK 314 Query: 311 LRAGMRTVERSIE-DDSFVHLPRLP 334 LR RT ++ DD L RLP Sbjct: 315 LRFATRTAGPALPLDDRLARLARLP 339 >gi|119383335|ref|YP_914391.1| S-adenosyl-methyltransferase MraW [Paracoccus denitrificans PD1222] gi|262824738|sp|A1AZK1|RSMH_PARDP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|119373102|gb|ABL68695.1| S-adenosyl-methyltransferase MraW [Paracoccus denitrificans PD1222] Length = 322 Score = 350 bits (899), Expect = 2e-94, Method: Composition-based stats. Identities = 130/321 (40%), Positives = 186/321 (57%), Gaps = 8/321 (2%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQE 76 H+PVLL ++ + P +D TFGAGGY+R + G+ VI +DRDP + Sbjct: 4 APHIPVLLGPLLRAVAPVE-GTWVDGTFGAGGYARGLLEQGADRVIGIDRDPAVFRMAEA 62 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 +Y ++ L + TFS L + VDGVV DLGVSSMQ+D +RGFSF + GPLDMR Sbjct: 63 WAGEYGDRLRLVEGTFSDLDS-LAGGPVDGVVLDLGVSSMQLDQPERGFSFLRDGPLDMR 121 Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 M G +A++++N A + + +L + GEE+ + RIA AIV R P T LS ++ Sbjct: 122 MGGDGPTAAELLNTAPEQVIADVLYLYGEERASRRIAKAIVAAR---PLSRTGQLSDIVS 178 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 + K + HP+TR+FQA+RI+VN+E +L GL +AE+AL+ GG L VVSFHSLEDR Sbjct: 179 ACLPRPKPGQSHPSTRAFQAIRIWVNDEFGQLVAGLAAAERALRPGGKLAVVSFHSLEDR 238 Query: 257 LVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 +VK+F +RS P A F ++ + P + ++A N R+RSA LR G+ Sbjct: 239 IVKRFMQARSNSAGGGSRYAPEAAREEPAFTLPFRRAIGPDEAELATNPRARSALLRVGI 298 Query: 316 RTVERSIE-DDSFVHLPRLPT 335 RT + D + + LP L Sbjct: 299 RTEAPAGRVDPAALGLPLLSE 319 >gi|237742793|ref|ZP_04573274.1| S-adenosyl-methyltransferase mraW [Fusobacterium sp. 4_1_13] gi|229430441|gb|EEO40653.1| S-adenosyl-methyltransferase mraW [Fusobacterium sp. 4_1_13] Length = 314 Score = 350 bits (899), Expect = 2e-94, Method: Composition-based stats. Identities = 107/308 (34%), Positives = 172/308 (55%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+PVL + + L P + +D T G G +S + S+ +I++D+D A+ ++ Sbjct: 9 HIPVLYYETLDNLVINPDGIYIDCTLGGGSHSEGILERLSDKGLLISIDQDTNAIEYSKK 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + ++ +F+ F + GVD G++ D+GVSS Q+D RGFS++ L Sbjct: 69 RLEKFGSKWKVFKGNFENIDTIAYMAGVDKVDGILMDIGVSSKQLDDPKRGFSYRYDVKL 128 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ ISA DVVN + + L++I+ GEE+ A +IA IV+ R+S+P + T DL Sbjct: 129 DMRMNTEQKISAYDVVNTYSEEQLSKIIFEYGEERHARKIAKLIVEERKSSPIEKTSDLI 188 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +LI++ + HPA ++FQA+RI VN E+E L + A + LK GG L +++FHS Sbjct: 189 ALIKRAYP--ERASKHPAKKTFQAIRIEVNRELEVLENAMSKAVELLKVGGRLAIITFHS 246 Query: 253 LEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK F + + I F+ ITKK ++P +++ N RS S+KL Sbjct: 247 LEDRIVKNKFKDLATACKCPKDIPICVCGGVKKFEIITKKPIIPIDDELKNNNRSHSSKL 306 Query: 312 RAGMRTVE 319 R R ++ Sbjct: 307 RILERILD 314 >gi|238918670|ref|YP_002932184.1| S-adenosyl-methyltransferase MraW, [Edwardsiella ictaluri 93-146] gi|263447473|sp|C5B9E8|RSMH_EDWI9 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|238868238|gb|ACR67949.1| S-adenosyl-methyltransferase MraW, putative [Edwardsiella ictaluri 93-146] Length = 313 Score = 350 bits (899), Expect = 2e-94, Method: Composition-based stats. Identities = 123/312 (39%), Positives = 181/312 (58%), Gaps = 19/312 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H VLL++ +A LN + +D TFG GG+SR +IA+DRDP A++ Sbjct: 7 HKTVLLDEAVAGLNLRSDGIYIDGTFGRGGHSRLILSQLGAEGRLIAIDRDPQAIAAAA- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +FS+ FS L DYV + G +DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 66 --QIDDPRFSIIHGPFSALADYVQEMGLSSRIDGILLDLGVSSPQLDDPERGFSFMRDGP 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G+SA+ + QA D+ +L GEE+ A RIA AIV+R ++ P T++L Sbjct: 124 LDMRMDPSRGLSAAQWLMQAEEDDIAWVLKTFGEERFAKRIARAIVERNRTEPLSRTREL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++LI F + ++ HPATRSFQA+RI++N+E++E+ + L A AL G L V+SFH Sbjct: 184 AALISDASPFKEKHK-HPATRSFQAIRIYINSELDEIERALEGALVALAPQGRLSVISFH 242 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNRRS 306 SLEDRLVK+F S + + + A +++ K+ +P + +V N R+ Sbjct: 243 SLEDRLVKRFIRQYSRGPQVPKGLPLTEAQLQAQGGPQLKALGKR--MPGEREVVDNPRA 300 Query: 307 RSAKLRAGMRTV 318 RS+ LR R Sbjct: 301 RSSVLRVAERIA 312 >gi|227431984|ref|ZP_03914004.1| S-adenosyl-methyltransferase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352269|gb|EEJ42475.1| S-adenosyl-methyltransferase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 312 Score = 350 bits (898), Expect = 2e-94, Method: Composition-based stats. Identities = 110/308 (35%), Positives = 167/308 (54%), Gaps = 10/308 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76 +HV VLL + IALL+ P +DAT G GG++ K + + D+D A+ E Sbjct: 4 EHVTVLLHEAIALLDIKPEGTYVDATLGGGGHTGEILKQLTTGTLYSFDQDDTAIQYNVE 63 Query: 77 TMRD--YKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 D + + F L + D GV +G+V+DLGVSS+Q D G RGFS++ Sbjct: 64 QYADEIAAGKLVIIHKNFRTLTSALADYGVTAVNGIVYDLGVSSVQFDDGQRGFSYKYDA 123 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM ++A +VN+ +L R+L GE++ +IA I + R++AP TT + Sbjct: 124 ELDMRMDQRQALTAKTIVNEWPFNELMRVLSRYGEDRFPKQIARKIEQHRENAPINTTFE 183 Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I++ + ++ HPA RSFQA RI VN+E+ L L A + L G + V++ Sbjct: 184 LVDIIKEAIPAPARRKGGHPAKRSFQAFRIAVNDELGALEDSLTQALELLATDGKISVIT 243 Query: 250 FHSLEDRLVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 F SLEDRLVK+ F +S + + A ++S+T+K + P+ E++A N R+ S Sbjct: 244 FQSLEDRLVKQMFREKSSAPELPAGLPVLPGQFEADYESLTRKPISPSTEEMAINHRAES 303 Query: 309 AKLRAGMR 316 AKLR R Sbjct: 304 AKLRGIRR 311 >gi|319790660|ref|YP_004152293.1| S-adenosyl-methyltransferase MraW [Thermovibrio ammonificans HB-1] gi|317115162|gb|ADU97652.1| S-adenosyl-methyltransferase MraW [Thermovibrio ammonificans HB-1] Length = 295 Score = 350 bits (898), Expect = 2e-94, Method: Composition-based stats. Identities = 123/307 (40%), Positives = 183/307 (59%), Gaps = 26/307 (8%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQET 77 H PVLL++ + +L G V +DAT G GG++ + K VIA+DRD A+ E Sbjct: 6 HPPVLLKESLKVLKAEEGGVFVDATLGGGGHTEAILKAHPENRVIAIDRDEEAIERAMER 65 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++ Y ++ S++ A FSQ+ + +GV+ GV+FDLGVS + G+RGF+ K PLD Sbjct: 66 LKPYGDRVSIYHANFSQIDRVLQMEGVERVKGVLFDLGVSHFHL-RGERGFTVWKEQPLD 124 Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM S ++A +VVN+ + ++L RI+ GEEK A +IA IVKRR+ P +TT +L+S Sbjct: 125 MRMDRSQKLTAKEVVNELSERELARIIFRYGEEKFARKIASEIVKRRKRKPIETTTELAS 184 Query: 194 LIQKTVYFS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++++ + + HPA ++FQA+RI+VN E EE+ G+ A + ++ GG L V++FH Sbjct: 185 IVEEVIPKKLWAGRKKHPAVKTFQAIRIYVNREFEEIETGIPKAAEFVEPGGRLAVITFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDRLVK + G F +TKK +VPT+E+V N +RSAKL Sbjct: 245 SLEDRLVKNILRNLEG-----------------FTPVTKKPIVPTEEEVVENPAARSAKL 287 Query: 312 RAGMRTV 318 RA R Sbjct: 288 RAAERVR 294 >gi|8134813|sp|P73460|RSMH_SYNY3 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|1652579|dbj|BAA17500.1| sll1144 [Synechocystis sp. PCC 6803] Length = 305 Score = 350 bits (898), Expect = 2e-94, Method: Composition-based stats. Identities = 125/326 (38%), Positives = 179/326 (54%), Gaps = 35/326 (10%) Query: 1 MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN 60 ME + K + A H HV VL ++ L P PG LDAT GAGG+S K+G Sbjct: 6 MEGMNLKQTAIADFH----HVSVLPTALVEGLEPKPGGYYLDATVGAGGHSERLLKLGIP 61 Query: 61 V--IALDRDPFAVSCGQETMRDY-KEQ----FSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + +DRD A++ E ++ ++ + +Q F+ + DG++ DLGV Sbjct: 62 LALTMIDRDVQAIAAAMERLQPLVADRKDISINTWQGNFADFPGQLEQ--FDGIIADLGV 119 Query: 114 SSMQIDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRI 172 SS Q+D GDRGFSF+ + PLDMRM S ++A++++N + KDL RI GEE+ + RI Sbjct: 120 SSPQLDQGDRGFSFRHTAPLDMRMDQSQDLTAAEIINHWSEKDLARIFYEYGEERLSRRI 179 Query: 173 AHAIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQG 231 A IV++R PFQTT DL+ I K V ++ RIHPATR+FQ LRI VN+E+ L + Sbjct: 180 ARQIVEQR---PFQTTTDLAEAITKWVPGKYRHGRIHPATRTFQGLRIAVNDELGSLEKF 236 Query: 232 LRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKK 291 + A LK+GG ++SFHSLEDR+VK F + +TKK Sbjct: 237 IAQAPHWLKSGGKFGIISFHSLEDRIVKHRFRETEN-----------------LRVLTKK 279 Query: 292 VVVPTQEDVAFNRRSRSAKLRAGMRT 317 ++ +E+ N R+RSAKLR + Sbjct: 280 PIIAGEEEQRQNPRARSAKLRWAEKI 305 >gi|302533959|ref|ZP_07286301.1| S-adenosyl-methyltransferase MraW [Streptomyces sp. C] gi|302442854|gb|EFL14670.1| S-adenosyl-methyltransferase MraW [Streptomyces sp. C] Length = 319 Score = 350 bits (898), Expect = 2e-94, Method: Composition-based stats. Identities = 118/310 (38%), Positives = 180/310 (58%), Gaps = 10/310 (3%) Query: 20 HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 HVPV+L++ + LL P PG V++D T G GG+S + +I LDRD A+ Sbjct: 7 HVPVMLQRCLDLLAPALERPGAVVVDCTLGLGGHSEALLTRFPEARLIGLDRDKEALRLS 66 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E + + ++ +L A ++ L + + + G V G++FDLGVSSMQ+D DRGF++ + Sbjct: 67 GERLAPFGDRATLVHAIYADLAEVLDNLGLPAVQGILFDLGVSSMQLDEADRGFAYAQDA 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + G+SA++V+N +L RIL GEEKQA RI AIV+ R+ PF + Sbjct: 127 PLDMRMDQTTGVSAAEVLNTYAPGELVRILRQYGEEKQAKRIVSAIVREREKEPFSNSAR 186 Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L LI+ + +K +PA R+FQALRI VN E+ L + + +A + GG + V+S Sbjct: 187 LVELIRDALPQAAKRTGGNPAKRTFQALRIEVNGELSGLERAIPAAVDRIAVGGRIAVLS 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 +HSLEDRLVK+ FA+ + + + + +T+ +PT+E++A NRR+ A Sbjct: 247 YHSLEDRLVKQVFAAGATSTAPPGLPVVPEKYQPKLKLLTRGAELPTEEEIAENRRAAPA 306 Query: 310 KLRAGMRTVE 319 + R R E Sbjct: 307 RFRGVERIRE 316 >gi|312885181|ref|ZP_07744860.1| S-adenosyl-methyltransferase MraW [Vibrio caribbenthicus ATCC BAA-2122] gi|309367121|gb|EFP94694.1| S-adenosyl-methyltransferase MraW [Vibrio caribbenthicus ATCC BAA-2122] Length = 316 Score = 350 bits (898), Expect = 2e-94, Method: Composition-based stats. Identities = 117/313 (37%), Positives = 169/313 (53%), Gaps = 18/313 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H+ VLL + I L+ P + +D TFG GG+SR+ + ++DRDP A++ + Sbjct: 6 KHISVLLNESIDGLSIKPDGIYIDGTFGRGGHSRTILSKLGENGRLFSIDRDPQAIAEAK 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +FS+ FS + DY VDGV+ DLGVSS Q+D +RGFSF K G Sbjct: 66 KI---QDPRFSIIHGPFSGIADYAETYDLVGKVDGVLLDLGVSSPQLDDAERGFSFMKDG 122 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---PFQT 187 PLDMRM S GI S + +A + D+T ++ GE+K A RIA +IV R++A P Sbjct: 123 PLDMRMDPSSGIPVSQWLLEAELDDITWVIREFGEDKHARRIAKSIVAYRENADNPPLTR 182 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T L+ LI ++ S + HPATR+FQA RI++N+E++E+ L+ A L G L V Sbjct: 183 TGQLAKLISESAPKSFKEKKHPATRAFQAFRIYINSELDEIDTALKGAVNILATKGRLSV 242 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT----KKVVVPTQEDVAFN 303 +SFHSLEDR+VK F S + + S K + P+ ++V N Sbjct: 243 ISFHSLEDRMVKHFIRKESKGPQVPHGIPLTEEQIQALGSANLKAVGKAIKPSSKEVDEN 302 Query: 304 RRSRSAKLRAGMR 316 RSRS+ LR + Sbjct: 303 TRSRSSVLRIAEK 315 >gi|325283143|ref|YP_004255684.1| Ribosomal RNA small subunit methyltransferase H [Deinococcus proteolyticus MRP] gi|324314952|gb|ADY26067.1| Ribosomal RNA small subunit methyltransferase H [Deinococcus proteolyticus MRP] Length = 299 Score = 350 bits (898), Expect = 2e-94, Method: Composition-based stats. Identities = 124/311 (39%), Positives = 180/311 (57%), Gaps = 24/311 (7%) Query: 8 TMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRD 67 T + H H+PVL ++V+ L PAPG++I+D T G G++R + G+ VI +D+D Sbjct: 2 TQEAVPHTPTLSHLPVLPQEVMDALAPAPGRLIVDGTLGGAGHTRMLLERGATVIGIDQD 61 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRG 124 P+A+S + + + F +Q + GV DG++ D+GVSS Q+D +RG Sbjct: 62 PYALSRVE---AEGLAGLRTVRGNFRDMQTLLAGIGVTQVDGILLDIGVSSFQLDDVERG 118 Query: 125 FSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 FS+ LDMRMS SG SA+D+VN +L ++ GEEK + R+A AIV RQSAP Sbjct: 119 FSYHSEAALDMRMSQSGPSAADLVNDLEEAELAALIYEYGEEKHSRRLARAIVAARQSAP 178 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 +TT +L+ +I++ IHPA R+FQALRI VN+E+ L +GL++AE L GG Sbjct: 179 IETTTELADIIKRAYP-GFVRGIHPARRTFQALRIAVNDELGALREGLQAAEALLAPGGR 237 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 L V+SFHSLEDR+VK+F + +TK+ V ++E+ A N Sbjct: 238 LGVISFHSLEDRIVKRFLLGSE-----------------RLRPLTKRPAVASEEEQAANP 280 Query: 305 RSRSAKLRAGM 315 RSRSAKLR+ Sbjct: 281 RSRSAKLRSAE 291 >gi|209524297|ref|ZP_03272847.1| S-adenosyl-methyltransferase MraW [Arthrospira maxima CS-328] gi|209495388|gb|EDZ95693.1| S-adenosyl-methyltransferase MraW [Arthrospira maxima CS-328] Length = 324 Score = 350 bits (898), Expect = 2e-94, Method: Composition-based stats. Identities = 119/328 (36%), Positives = 169/328 (51%), Gaps = 30/328 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCG--- 74 H+PVL ++I L G LDAT G GG++R + NV A+DRD A++ Sbjct: 19 HIPVLGRELIEGLAVQEGGHYLDATVGGGGHTRMIFQAAPNVRVTAIDRDLEAIAAAKSM 78 Query: 75 -QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +T+ + + + FSQ DG++ DLGV+S Q+D RGFSF+ GPL Sbjct: 79 LMDTIGNCGARLKFWHGNFSQYPS--SPSQFDGIIADLGVNSHQLDTPGRGFSFRHCGPL 136 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +SA++++N + K L I GEE+ + RIA IV++R PFQTT+ L+ Sbjct: 137 DMRMNPQDPLSAAEIINTWDEKQLADIFYTYGEERLSRRIARQIVEKR---PFQTTEHLA 193 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + I V + RIHPATR FQALRI VN E+ L L +A LK G + ++SFH Sbjct: 194 NAIANCVPSKYRYGRIHPATRVFQALRIAVNGELTALETFLETAPTWLKPRGRIGIISFH 253 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR VK F H + + +TKK + P +++ N R+RSAKL Sbjct: 254 SLEDRPVKHGFR-----------------HHPLLKVLTKKPITPQPDEINQNPRARSAKL 296 Query: 312 RAGMRTVERSIEDDSFVHLPRLPTLSQF 339 R R+ + +P Q Sbjct: 297 RLAERSASQHPRLKHGGFVPPFQVADQL 324 >gi|124003786|ref|ZP_01688634.1| S-adenosyl-methyltransferase MraW [Microscilla marina ATCC 23134] gi|123990841|gb|EAY30308.1| S-adenosyl-methyltransferase MraW [Microscilla marina ATCC 23134] Length = 303 Score = 350 bits (898), Expect = 2e-94, Method: Composition-based stats. Identities = 113/304 (37%), Positives = 167/304 (54%), Gaps = 14/304 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H PV+L++ I L P V +D TFG GG+S++ + + A D+D A +E Sbjct: 5 HQPVMLKECIEGLAINPDGVYVDVTFGGGGHSKAILEQLSEKGKLYAFDQDADAKQEAKE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 F L +A F L+ Y+ GV DG++ DLG+SS QID +RGFS + L Sbjct: 65 I---DHPGFYLIRANFRYLKKYLKMYGVSKVDGILADLGISSHQIDTPERGFSTRFDAYL 121 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRMS S ++A DVVN+ + +L +ILG+ GE K A +A IV+ RQ A T ++L Sbjct: 122 DMRMSESIEVTAQDVVNEYSESELHKILGMYGELKNAKTVASTIVRARQDAAINTVEELK 181 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 S +++ + + FQALRI VN EI+ L L A + LK G L+V+S+HS Sbjct: 182 SAVKRHAPRGRE--FKFFAQVFQALRIEVNEEIQVLEVMLEQAAEVLKPQGRLVVMSYHS 239 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR VK + + A + M + P ++I +K++ +E++A N R+RSAKLR Sbjct: 240 LEDRPVKNYIQKGRFRGEAEKDMFGNVLKP--LRAINRKIITAQEEEIALNNRARSAKLR 297 Query: 313 AGMR 316 + Sbjct: 298 IAEK 301 >gi|308177867|ref|YP_003917273.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Arthrobacter arilaitensis Re117] gi|307745330|emb|CBT76302.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Arthrobacter arilaitensis Re117] Length = 330 Score = 350 bits (898), Expect = 2e-94, Method: Composition-based stats. Identities = 121/317 (38%), Positives = 185/317 (58%), Gaps = 15/317 (4%) Query: 20 HVPVLLEKVIALLNP------APGK--VILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69 HVPVLL++ + LL P A G+ +++D T G GG+S + + ++I LDRD Sbjct: 14 HVPVLLDRCVNLLAPGIERANAEGRRAIVVDCTLGMGGHSEAILQRFENLHLIGLDRDEQ 73 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFS 126 A + ++++ L A + ++ D V D G+DGV+FDLGVSS+Q+D +RGF+ Sbjct: 74 AHELAGARLAPFQDRIDLVHAVYDEIADVVEDLGFPGIDGVLFDLGVSSLQLDERERGFA 133 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 + PLDMRM S G +A D+VN + +L RI+ GEEK A RI+ AIV+ R + Sbjct: 134 YSYDAPLDMRMDTSVGPTAEDLVNDLDRDELLRIIRQWGEEKFAGRISTAIVEARAKSRI 193 Query: 186 QTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 TT +L +I+ V + N HPA R+FQALRI VN E++ L + + +A AL GG Sbjct: 194 STTAELVEVIRSVVPAAAARNHGHPAKRTFQALRIAVNEELDVLERAIPAAMGALNIGGR 253 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 ++V+S+HSLED++ K+ F S + H A ++ +TK P++ ++A N Sbjct: 254 VVVMSYHSLEDKITKRHFVQGSTSSAPPGFPVELEEHKAEYKVLTKGTEKPSEHEIAENS 313 Query: 305 RSRSAKLRAGMRTVERS 321 R+ SA+LRA R ++RS Sbjct: 314 RAASARLRAVERVLKRS 330 >gi|294784753|ref|ZP_06750041.1| S-adenosyl-methyltransferase MraW [Fusobacterium sp. 3_1_27] gi|294486467|gb|EFG33829.1| S-adenosyl-methyltransferase MraW [Fusobacterium sp. 3_1_27] Length = 314 Score = 350 bits (898), Expect = 2e-94, Method: Composition-based stats. Identities = 106/308 (34%), Positives = 172/308 (55%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+PVL + + L P + +D T G G +S + S+ +I++D+D A+ ++ Sbjct: 9 HIPVLYYETLDNLVINPDGIYIDCTLGGGSHSEGILERLSDKGLLISIDQDTNAIEYSKK 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + ++ +F+ F + GVD G++ D+GVSS Q+D RGFS++ L Sbjct: 69 RLEKFGSKWKVFKGNFENIDTIAYMAGVDKVDGILMDIGVSSKQLDDPKRGFSYRYDVKL 128 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ ISA DVVN + + L++I+ GEE+ A +IA IV+ R+S+P + T DL Sbjct: 129 DMRMNTEQKISAYDVVNTYSEEQLSKIIFEYGEERHARKIAKLIVEERKSSPIEKTSDLI 188 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +LI++ + HPA ++FQA+RI VN E+E L + A + LK GG L +++FHS Sbjct: 189 ALIKRAYP--ERASKHPAKKTFQAIRIEVNRELEVLENAMSKAVELLKVGGRLAIITFHS 246 Query: 253 LEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK F + + I F+ ITKK ++P +++ N R+ S+KL Sbjct: 247 LEDRIVKNKFKDLATACKCPKDIPICVCGGVKKFEIITKKPIIPIDDELKNNNRAHSSKL 306 Query: 312 RAGMRTVE 319 R R ++ Sbjct: 307 RILERILD 314 >gi|325202777|gb|ADY98231.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis M01-240149] Length = 316 Score = 350 bits (898), Expect = 2e-94, Method: Composition-based stats. Identities = 112/308 (36%), Positives = 167/308 (54%), Gaps = 10/308 (3%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRD 80 +L + + L V +D TFG GG+SR +I D+DP A++ +E + Sbjct: 1 MLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFDKDPQAIAVAEE-LAR 59 Query: 81 YKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 ++ + F+ Q + G VDG +FDLG+SS QID G RGFSF+ PLDMRM Sbjct: 60 SDKRVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGSRGFSFRFDAPLDMRM 119 Query: 138 SCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 + G+SA++ + A+ +DL ++ GEE+ + +IA AIV +R +P TT+ L+ ++ Sbjct: 120 DTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRAESPIDTTRKLAQIVA 179 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 + V + + PATR+FQA+RIF+N E+EE+ L LK GG L V++FHSLEDR Sbjct: 180 QNVRTRERGQ-DPATRTFQAIRIFINRELEEVGAVLPQVMCRLKEGGRLAVIAFHSLEDR 238 Query: 257 LVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 +VK+F S R A P I + + P + ++A N R+RSA LR Sbjct: 239 IVKQFVKKYSQHAPLPRWAAVREADLPEPPLKIAGRALKPGEAEIAANPRARSAVLRVAE 298 Query: 316 RTVERSIE 323 RT E Sbjct: 299 RTAGPIPE 306 >gi|239978979|ref|ZP_04701503.1| putative S-adenosylmethionine-dependent methyltransferase [Streptomyces albus J1074] Length = 343 Score = 350 bits (898), Expect = 2e-94, Method: Composition-based stats. Identities = 125/328 (38%), Positives = 183/328 (55%), Gaps = 10/328 (3%) Query: 6 CKTMSSAIHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--N 60 ++A HVPV+L + + LL PA PG V++D T G GG+S + Sbjct: 16 AGHQAAAPEDGNTRHVPVMLRRCLDLLAPALAEPGAVVVDCTLGLGGHSEALLATFPAAR 75 Query: 61 VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQ 117 ++ALDRD A+ E + + ++ +L A + +L + + G V GV+FDLGVSSMQ Sbjct: 76 LVALDRDKEALRLSGERLARHGDRATLVHAVYDELPEVLDRLGIPRVQGVLFDLGVSSMQ 135 Query: 118 IDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 +D RGF++ + PLDMRM + GISA++V+N DL RIL GEEKQA RI A+ Sbjct: 136 LDEAGRGFAYAQDAPLDMRMDQTTGISAAEVLNTYAPGDLVRILRAYGEEKQARRIVSAV 195 Query: 177 VKRRQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 V R PF T+ L +I+ + +K +PA R+FQALRI VN E+ L + + +A Sbjct: 196 VDERAKEPFTTSARLVEVIRDALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAA 255 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295 +L GG L V+S+HSLEDRLVK+ A+ + + + + +T+ +P Sbjct: 256 VASLAVGGRLAVLSYHSLEDRLVKQVLAAGAASTAPPGLPVVPERYQPRLKLLTRGAELP 315 Query: 296 TQEDVAFNRRSRSAKLRAGMRTVERSIE 323 T+E+VA NRR+ A+LR R E E Sbjct: 316 TEEEVAENRRAAPARLRGAQRIREEHQE 343 >gi|254451868|ref|ZP_05065305.1| S-adenosyl-methyltransferase MraW [Octadecabacter antarcticus 238] gi|198266274|gb|EDY90544.1| S-adenosyl-methyltransferase MraW [Octadecabacter antarcticus 238] Length = 325 Score = 349 bits (897), Expect = 2e-94, Method: Composition-based stats. Identities = 144/322 (44%), Positives = 189/322 (58%), Gaps = 8/322 (2%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSC 73 H+PVL+ +IA +P LD TFG GGY++ G+N VI +DRDP Sbjct: 5 DDTAPHIPVLIGPLIAACSPIS-GTWLDGTFGVGGYTQRLLDAGANKVIGVDRDPAVFKM 63 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 Q + + L + TFS L D +DG+V DLGVSSMQID +RGFSF + GPL Sbjct: 64 AQWAVDNPA--VELVEDTFSNLDAVASD--LDGIVLDLGVSSMQIDQAERGFSFMRDGPL 119 Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 DMRM G SA+D+VN+ + DL IL GEE+ + RIA IV++R P TT L+ Sbjct: 120 DMRMGQEGRSAADIVNETDETDLADILYTYGEERASRRIARKIVEQRDREPITTTLRLAK 179 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 LI+ + SK + HPATRSFQA+RI VN+E +LA+GL +AE+ALK GG L VV+FHS+ Sbjct: 180 LIEGCLPRSKQGQSHPATRSFQAIRIAVNDEYGQLAEGLEAAERALKTGGYLAVVTFHSV 239 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPS-NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 EDR+VK+F R G + P F+ +TKK ++VA N RSRSAKLR Sbjct: 240 EDRMVKRFLQQRGGGMGNANRYSPVLETEKPAFEIVTKKARAADDDEVAQNPRSRSAKLR 299 Query: 313 AGMRTVERSIE-DDSFVHLPRL 333 RT S D S + +P+L Sbjct: 300 VARRTDAPSGSVDRSKLGMPQL 321 >gi|237654092|ref|YP_002890406.1| S-adenosyl-methyltransferase MraW [Thauera sp. MZ1T] gi|237625339|gb|ACR02029.1| S-adenosyl-methyltransferase MraW [Thauera sp. MZ1T] Length = 311 Score = 349 bits (897), Expect = 3e-94, Method: Composition-based stats. Identities = 123/309 (39%), Positives = 173/309 (55%), Gaps = 12/309 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 HV VLL + + L +D TFG GG+SR+ + +IA DRDP A++ GQ Sbjct: 7 HVSVLLSEAVDALAIRADGFYVDGTFGRGGHSRAVLQRLGPQGRLIAFDRDPLAIAAGQ- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + +L + FS L D + GV DGV+ DLGVSS Q+D RG SF+ PL Sbjct: 66 --GVGDARLTLVHSAFSALDDELARLGVQAVDGVLLDLGVSSPQLDDAARGMSFRFDAPL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S G + ++ + +A+V +T ++ GEE+ A IA AI R TT L+ Sbjct: 124 DMRMDTSRGQTVAEWLAEASVGQITEVIREYGEERFAHAIAKAIANARAGGAVATTGQLA 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +L++K V + + HPATR+FQALRIF+N E+EEL++ L L+ GG L V+SFHS Sbjct: 184 ALVEKAVRTREPGQ-HPATRTFQALRIFINQELEELSRVLPVCVSRLRPGGRLAVISFHS 242 Query: 253 LEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK+F S V+ R + + PA + K + P++ +VA N R+RSA L Sbjct: 243 LEDRIVKRFMRDESRPPVLPRRLPVRAADLPAPRLQLVGKAMRPSEAEVAANPRARSAVL 302 Query: 312 RAGMRTVER 320 R RT Sbjct: 303 RVAERTEAP 311 >gi|316984918|gb|EFV63874.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis H44/76] gi|325199600|gb|ADY95055.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis H44/76] Length = 316 Score = 349 bits (897), Expect = 3e-94, Method: Composition-based stats. Identities = 113/308 (36%), Positives = 168/308 (54%), Gaps = 10/308 (3%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRD 80 +L + + L V +D TFG GG+SR +I D+DP A++ +E + Sbjct: 1 MLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFDKDPQAIAVAEE-LAR 59 Query: 81 YKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 ++ + F+ Q + G VDG +FDLG+SS QID G RGFSF+ PLDMRM Sbjct: 60 SDKRVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGSRGFSFRFDAPLDMRM 119 Query: 138 SCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 + G+SA++ + A+ +DL ++ GEE+ + RIA AIV +R +P TT+ L+ ++ Sbjct: 120 DTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRRIARAIVAQRAESPIDTTRKLAQIVA 179 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 + V + + PATR+FQA+RIF+N E+EE+ L LK GG L V++FHSLEDR Sbjct: 180 QNVRTRERGQ-DPATRTFQAVRIFINRELEEVGAVLPQVMCRLKEGGRLAVIAFHSLEDR 238 Query: 257 LVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 +VK+F S R A P + I + + P + ++A N R+RSA LR Sbjct: 239 IVKQFVKKYSQHAPLPRWAAVREADLPELPLKIVGRALKPGEAEIAANPRARSAVLRVAE 298 Query: 316 RTVERSIE 323 RT E Sbjct: 299 RTAGPIPE 306 >gi|34763068|ref|ZP_00144041.1| S-adenosyl-methyltransferase mraW [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887267|gb|EAA24365.1| S-adenosyl-methyltransferase mraW [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 331 Score = 349 bits (897), Expect = 3e-94, Method: Composition-based stats. Identities = 108/325 (33%), Positives = 177/325 (54%), Gaps = 13/325 (4%) Query: 3 SKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-- 60 K+ + M + H+PVL + + L P + +D T G G +S + S+ Sbjct: 12 RKNGEFMEKIGND---YHIPVLYYETLDNLVINPDGIYIDCTLGGGSHSEGILERLSDKG 68 Query: 61 -VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSM 116 +I++D+D A+ ++ + + ++ +F+ F + GVD G++ D+GVSS Sbjct: 69 LLISIDQDTNAIEYSKKRLEKFGSKWKVFKGNFENIDTIAYMAGVDKVDGILMDIGVSSK 128 Query: 117 QIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175 Q+D RGFS++ LDMRM+ ISA DVVN + + L++I+ GEE+ A +IA Sbjct: 129 QLDDPKRGFSYRYDVKLDMRMNIEQKISAYDVVNTYSEEQLSKIIFEYGEERHARKIAKL 188 Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 IV+ R+S+P + T DL +LI++ + HPA ++FQA+RI VN E+E L + A Sbjct: 189 IVEERKSSPIEKTSDLIALIKRAYP--ERASKHPAKKTFQAIRIEVNRELEVLENAMSKA 246 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVV 294 + LK GG L +++FHSLEDR+VK F + + I F+ ITKK ++ Sbjct: 247 VELLKVGGRLAIITFHSLEDRIVKNKFKDLATACKCPKDIPICVCGGVKKFEIITKKPII 306 Query: 295 PTQEDVAFNRRSRSAKLRAGMRTVE 319 P +++ N R+ S+KLR R ++ Sbjct: 307 PIDDELKNNNRAHSSKLRILERILD 331 >gi|291440170|ref|ZP_06579560.1| S-adenosylmethionine-dependent methyltransferase [Streptomyces ghanaensis ATCC 14672] gi|291343065|gb|EFE70021.1| S-adenosylmethionine-dependent methyltransferase [Streptomyces ghanaensis ATCC 14672] Length = 318 Score = 349 bits (897), Expect = 3e-94, Method: Composition-based stats. Identities = 124/310 (40%), Positives = 183/310 (59%), Gaps = 10/310 (3%) Query: 20 HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 HVPV+L++ + LL P PG V++D T G GG+S + + ++ALDRD A+ Sbjct: 6 HVPVMLQRCLDLLAPALERPGAVVVDCTLGLGGHSEALLRRFPEARLVALDRDKEALRLS 65 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E + + E+ +L A + +L D + GV GV+FDLGVSSMQ+D DRGF++ + Sbjct: 66 GERLAPFGERATLVHAVYDELPDVLARLGVPRVQGVLFDLGVSSMQLDEADRGFAYAQDA 125 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + G+SA++V+N +L RIL GEEKQA RI AIV+ R+ PF + Sbjct: 126 PLDMRMDQTAGVSAAEVLNTYPPGELVRILRAYGEEKQAKRIVAAIVREREKEPFTRSAR 185 Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L LI+ + +K +PA R+FQALRI VN E+ L + + +A KAL G + V+S Sbjct: 186 LVELIRDALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVKALDVDGRIAVLS 245 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 +HSLEDRLVK+ FA+ + + + + +T+ +PT+E++A NRR+ A Sbjct: 246 YHSLEDRLVKQVFAAGAATTAPPGLPVVPERYQPRLKLLTRGAELPTEEEIAENRRAAPA 305 Query: 310 KLRAGMRTVE 319 +LR R E Sbjct: 306 RLRGAQRIRE 315 >gi|256821906|ref|YP_003145869.1| S-adenosyl-methyltransferase MraW [Kangiella koreensis DSM 16069] gi|256795445|gb|ACV26101.1| S-adenosyl-methyltransferase MraW [Kangiella koreensis DSM 16069] Length = 311 Score = 349 bits (897), Expect = 3e-94, Method: Composition-based stats. Identities = 110/311 (35%), Positives = 168/311 (54%), Gaps = 12/311 (3%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAV 71 T +H VLLE+ + L P + +D TFG GG+SR+ +I D+D A+ Sbjct: 2 STKQEHDAVLLEEAVEALVIDPNGIYIDCTFGRGGHSRAILSHLSEEGRLIGFDKDLQAI 61 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSF 127 + G E ++ +F++ +FS L+ V +G V GV+ DLGVSS Q+D +RGFSF Sbjct: 62 AVG-EQLQQEDARFNIVHESFSLLEQEVSKRGWVGEVTGVLMDLGVSSPQLDQAERGFSF 120 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + GPLDMRM + G +A + + +D+ GEE+ A RIA AIV++R AP Sbjct: 121 MQDGPLDMRMDTTRGQTAEQWIANTDEEDMVWAFKAFGEERYAKRIARAIVEKRAKAPIT 180 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T+ L+ +I + + ++ HPATR FQA+RI VN E+++L L LK GG L+ Sbjct: 181 RTKQLADIISEAHPRWEKHK-HPATRCFQAIRIAVNRELDDLKDTLEQVLNVLKVGGRLV 239 Query: 247 VVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 +SFHSLEDR+VK+F ++ G+ I + + + K ++ N R Sbjct: 240 AISFHSLEDRIVKQFIQKQAQGQNFPAGLPITEDMINRRMKKV-GKFTKAGDSELERNIR 298 Query: 306 SRSAKLRAGMR 316 +RSA +R + Sbjct: 299 ARSAVMRVAEK 309 >gi|256425920|ref|YP_003126573.1| S-adenosyl-methyltransferase MraW [Chitinophaga pinensis DSM 2588] gi|256040828|gb|ACU64372.1| S-adenosyl-methyltransferase MraW [Chitinophaga pinensis DSM 2588] Length = 302 Score = 349 bits (897), Expect = 3e-94, Method: Composition-based stats. Identities = 112/312 (35%), Positives = 163/312 (52%), Gaps = 17/312 (5%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69 + H+PVLL++VI L P V +DATFG GG+SR+ + +I D+D Sbjct: 1 MEEASAYHLPVLLQEVITNLQIQPDGVYVDATFGGGGHSRAILEKLNENGRLIVFDQDED 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFS 126 A + R + + Q F LQ ++ VDG++ DLGVSS Q D +RGFS Sbjct: 61 AYNN-----RIDDPRVTFVQQNFRHLQRFLRLYKSVPVDGILADLGVSSWQFDTAERGFS 115 Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 + G LDMRM + ++A+ ++ + K+L + GE A +A IV+ R++ P Sbjct: 116 TRFDGDLDMRMDKRNALTAASLLQSSTEKELHLLFQNYGEVTNARTLAKTIVQERKARPM 175 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 +T + S+IQ V K N + FQALRI VN+E L L + + LK GG L Sbjct: 176 RTINEFKSVIQPIV---KGNPQKYLAQVFQALRIVVNDEFGALKDMLNQSAEVLKPGGKL 232 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 +++FHSLEDRLVK F +G+ A P +F+ +TKK V + E++ N R Sbjct: 233 AIITFHSLEDRLVKNFMK--TGQFEAQEDTFSYETPPKLFRLVTKKPVTASPEELKRNTR 290 Query: 306 SRSAKLRAGMRT 317 SRSAKLR + Sbjct: 291 SRSAKLRVAEKI 302 >gi|269215884|ref|ZP_06159738.1| S-adenosyl-methyltransferase MraW [Slackia exigua ATCC 700122] gi|269130834|gb|EEZ61910.1| S-adenosyl-methyltransferase MraW [Slackia exigua ATCC 700122] Length = 318 Score = 349 bits (897), Expect = 3e-94, Method: Composition-based stats. Identities = 113/311 (36%), Positives = 170/311 (54%), Gaps = 14/311 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS---FCKMGSNVIALDRDPFAVSCGQE 76 H PVLL + + L P + +DAT G G+S +I +D+D A++ E Sbjct: 7 HTPVLLAECLEGLALKPRHIFVDATLGGAGHSCEAAGRLGADGLLIGIDQDDAALAAAGE 66 Query: 77 TMRDYKE----QFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 +R E + L + F L + + G+DG++FDLGVSS Q+D RGFSF++ Sbjct: 67 RLRALPEKKRPRIKLLKGNFGDLDELLVRAQVPGIDGILFDLGVSSPQLDVASRGFSFRE 126 Query: 130 SGPLDMRMSCSGIS--ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 PLDMRM + A+++VN A +L RI+ +EK A RIA IV R+ AP +T Sbjct: 127 DAPLDMRMDPGRQTRNAAELVNSATESELARIIFENSDEKWARRIAQFIVAAREDAPIET 186 Query: 188 TQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T L +I+ + ++ HPA R+FQALRI VN+E++ L +GL +A + L G + Sbjct: 187 TGQLVEIIKAAIPASARRRGGHPAKRTFQALRIEVNSELDALKRGLEAAVRWLNPQGRIA 246 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V+S+HSLEDR+VK FA S + + V + +T+K ++P + ++ N R Sbjct: 247 VISYHSLEDRIVKNLFADLSRTCICPPDLPVCVCGADPVLKVMTRKPLLPAEGEIEGNPR 306 Query: 306 SRSAKLRAGMR 316 +RSAKLR R Sbjct: 307 ARSAKLRIACR 317 >gi|77408183|ref|ZP_00784928.1| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae COH1] gi|77173198|gb|EAO76322.1| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae COH1] Length = 298 Score = 349 bits (897), Expect = 3e-94, Method: Composition-based stats. Identities = 96/298 (32%), Positives = 155/298 (52%), Gaps = 10/298 (3%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDYKE--QF 85 +L+ P +DAT G G+S ++ A D+D A+ ++ Y + Q Sbjct: 1 MLDIKPDGTYVDATLGGAGHSEYLLSQLGPDGHLYAFDQDQKAIDIAHIRLKKYVDTGQV 60 Query: 86 SLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-G 141 + + F L + GV +G+ +DLGVSS Q+D +RGFS+++ PLDMRM+ Sbjct: 61 TFIKDNFRNLSSNLKALGVSEINGICYDLGVSSPQLDERERGFSYKQDAPLDMRMNREQS 120 Query: 142 ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYF 201 ++A DVVN + DL RI GE+K + +IA I + R P TT +L+ +I+ + Sbjct: 121 LTAYDVVNTYSYHDLVRIFFKYGEDKFSKQIARKIEQVRAEKPISTTTELAEIIKSSKSA 180 Query: 202 SK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKK 260 + + HPA + FQA+RI VN+E+ + ++ A L G + V++FHSLEDRL K+ Sbjct: 181 KELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDLLAVDGRISVITFHSLEDRLTKQ 240 Query: 261 FFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318 F S + + + + +K ++P+QE++ N R+ SAKLR R Sbjct: 241 LFKEASTVEVPKGLPFIPDDLQPKMELVNRKPILPSQEELEANNRAHSAKLRVARRIR 298 >gi|29832656|ref|NP_827290.1| S-adenosylmethionine-dependent methyltransferase [Streptomyces avermitilis MA-4680] gi|42559459|sp|Q82AE4|RSMH_STRAW RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|29609776|dbj|BAC73825.1| putative S-adenosylmethionine-dependent methyltransferase [Streptomyces avermitilis MA-4680] Length = 318 Score = 349 bits (897), Expect = 3e-94, Method: Composition-based stats. Identities = 124/312 (39%), Positives = 186/312 (59%), Gaps = 10/312 (3%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 HVPV+L++ + +L PA PG V++D T G GG+S + ++ALDRD A+ Sbjct: 6 HVPVMLQRCLDMLAPALTEPGAVVVDCTLGLGGHSEALLTQFPEARLVALDRDKEALRLS 65 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E + + ++ +L A + +L D + GV GV+FDLGVSSMQ+D DRGF++ + Sbjct: 66 GERLAPFGDRATLVHAVYDELPDVLDRLGVPRVQGVLFDLGVSSMQLDEADRGFAYAQDA 125 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + GISA++V+N ++ RIL GEEKQA RI AIV+ R+ PF + Sbjct: 126 PLDMRMDQTTGISAAEVLNTYPPGEIVRILRAYGEEKQAKRIVSAIVREREKEPFSNSAR 185 Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L LI+ ++ +K +PA R+FQALRI VN E+ L + + +A KAL GG + V+S Sbjct: 186 LVELIRDSLPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVKALAVGGRIAVLS 245 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 +HSLEDRLVK+ FA+ + + + + +T+ +PT+E++A NRR+ A Sbjct: 246 YHSLEDRLVKQVFAAGAATTAPPGLPVVPERYQPRLKLLTRGAELPTEEEIAENRRAAPA 305 Query: 310 KLRAGMRTVERS 321 +LR R E + Sbjct: 306 RLRGAQRIREDA 317 >gi|82703617|ref|YP_413183.1| methyltransferase [Nitrosospira multiformis ATCC 25196] gi|123543903|sp|Q2Y630|RSMH_NITMU RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|82411682|gb|ABB75791.1| methyltransferase [Nitrosospira multiformis ATCC 25196] Length = 316 Score = 349 bits (897), Expect = 3e-94, Method: Composition-based stats. Identities = 113/315 (35%), Positives = 170/315 (53%), Gaps = 17/315 (5%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72 G H VLL++ + L P + +D TFG GG+SR + +IA DRDP A + Sbjct: 3 EAGKHTTVLLQEAVEALALKPDGIYVDGTFGRGGHSRLILERLGKNGRLIAFDRDPVACA 62 Query: 73 CGQETMRDYKE-QFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQ 128 G R + + +F + +++S+LQ+ + + DGV+ DLGVSS Q++ RGFSF Sbjct: 63 VG----RSFGDERFCMVHSSYSRLQEVLRQLNIGQIDGVLLDLGVSSPQLEEATRGFSFS 118 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 GPLDMRM + G +A+ + A+ L ++ GEE+ A +IA AIVK R P T Sbjct: 119 MEGPLDMRMDTTEGQTAAQWLASASEVQLEEVIKEYGEERFAKQIARAIVKARARQPLVT 178 Query: 188 TQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T L++++ + + +PATR+FQA+RI++N E+E L+ L + LK GG L+ Sbjct: 179 TSQLAAIVAAAIPARAREPKQNPATRTFQAIRIYLNQELERLSLALPQCVEMLKTGGRLV 238 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS----ITKKVVVPTQEDVAF 302 V+SFHSLEDR+VK+F + +H+ F + K V P +V Sbjct: 239 VISFHSLEDRIVKRFIREGANTDKLPKHLPLRADEVRRFSRASLQMVGKAVRPGVAEVEC 298 Query: 303 NRRSRSAKLRAGMRT 317 N R+RSA +R R Sbjct: 299 NPRARSAVMRVAERI 313 >gi|85373178|ref|YP_457240.1| S-adenosyl-methyltransferase MraW [Erythrobacter litoralis HTCC2594] gi|122545211|sp|Q2NCZ8|RSMH_ERYLH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|84786261|gb|ABC62443.1| S-adenosyl-methyltransferase [Erythrobacter litoralis HTCC2594] Length = 315 Score = 349 bits (897), Expect = 3e-94, Method: Composition-based stats. Identities = 137/313 (43%), Positives = 201/313 (64%), Gaps = 10/313 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET-- 77 HVPVLL++V+A L+P PG V++DATFGAGGY+R+ G+ V A DRDP A++ G + Sbjct: 7 HVPVLLDEVVAALDPQPGDVLVDATFGAGGYTRALLDSGATVHAFDRDPDAIAAGSQWPE 66 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++ + L FS++ + + GV DGV D+GVSSMQ+D RGF+F GPLD Sbjct: 67 TKEEPPRLVLHPRRFSEMVHALAEAGVAQVDGVAMDIGVSSMQLDQAQRGFAFSADGPLD 126 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRMS G SA+D +N A +++ +L GEE+Q+ R+A AI+ R P +TT DL+ + Sbjct: 127 MRMSQHGPSAADFLNSAEAEEIADVLYQYGEERQSRRVARAIIAAR---PLETTGDLARV 183 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 ++K + + PATR+FQA+RI VN E++EL +GL +AE L++GG L VVSFHSLE Sbjct: 184 VRKALGYRVGAPKDPATRTFQAVRIHVNGELDELREGLHAAEHLLRSGGRLAVVSFHSLE 243 Query: 255 DRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 DR+VK+F S SGK +P ++ PA+F I+ K + P++ ++A N R+RS+ LR Sbjct: 244 DRIVKRFLQSASGKAGGTSRYLPQTDVSPAIFSDIS-KAIRPSEAEIARNPRARSSTLRH 302 Query: 314 GMRTVERSIEDDS 326 RT ++ + Sbjct: 303 ATRTDAPPRKEAA 315 >gi|285019581|ref|YP_003377292.1| S-adenosyl-methyltransferase [Xanthomonas albilineans GPE PC73] gi|283474799|emb|CBA17298.1| putative s-adenosyl-methyltransferase protein [Xanthomonas albilineans] Length = 333 Score = 349 bits (897), Expect = 3e-94, Method: Composition-based stats. Identities = 116/311 (37%), Positives = 172/311 (55%), Gaps = 7/311 (2%) Query: 12 AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDP 68 A+ + HVPVL +V+ L + LD TFG GG++R G ++ +D+DP Sbjct: 11 AVSYPSAAHVPVLFAQVMDGLQVIENGIYLDGTFGRGGHARGVLHKLGPGGRLLVMDKDP 70 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 A++ E + S+ + +F+ L + +DGV+FDLGVSS Q+D +RGFSF Sbjct: 71 EAIAEA-EHAFGGDARVSIRRGSFADLGHWDAATALDGVLFDLGVSSPQLDVAERGFSFG 129 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 K GPLDMRM +G SA+ + +A+ +++ +L GEE+Q+ RIA AIV RR P Sbjct: 130 KDGPLDMRMDPHAGESAAQWLARADEREIADVLWHYGEERQSRRIARAIVARRAEQPLTR 189 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T L+ LI + +++ HPATRSFQA+RI N E+ +L GL +A LK GG L V Sbjct: 190 TAQLAELIATVMPRG-DSKTHPATRSFQAIRIHTNRELADLESGLDAALARLKPGGRLAV 248 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +SFHSLEDR+VK F + + R + + + + + E++A N R+R Sbjct: 249 ISFHSLEDRIVKHFMQRHAKAPPSNRRLPEAQTFVPALR-LHGGAIKADAEELAGNPRAR 307 Query: 308 SAKLRAGMRTV 318 SA LR + Sbjct: 308 SAVLRVAEKLA 318 >gi|291450857|ref|ZP_06590247.1| S-adenosylmethionine-dependent methyltransferase [Streptomyces albus J1074] gi|291353806|gb|EFE80708.1| S-adenosylmethionine-dependent methyltransferase [Streptomyces albus J1074] Length = 341 Score = 349 bits (897), Expect = 3e-94, Method: Composition-based stats. Identities = 125/328 (38%), Positives = 183/328 (55%), Gaps = 10/328 (3%) Query: 6 CKTMSSAIHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--N 60 ++A HVPV+L + + LL PA PG V++D T G GG+S + Sbjct: 14 AGHQAAAPEDGNTRHVPVMLRRCLDLLAPALAEPGAVVVDCTLGLGGHSEALLATFPAAR 73 Query: 61 VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQ 117 ++ALDRD A+ E + + ++ +L A + +L + + G V GV+FDLGVSSMQ Sbjct: 74 LVALDRDKEALRLSGERLARHGDRATLVHAVYDELPEVLDRLGIPRVQGVLFDLGVSSMQ 133 Query: 118 IDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 +D RGF++ + PLDMRM + GISA++V+N DL RIL GEEKQA RI A+ Sbjct: 134 LDEAGRGFAYAQDAPLDMRMDQTTGISAAEVLNTYAPGDLVRILRAYGEEKQARRIVSAV 193 Query: 177 VKRRQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 V R PF T+ L +I+ + +K +PA R+FQALRI VN E+ L + + +A Sbjct: 194 VDERAKEPFTTSARLVEVIRDALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAA 253 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295 +L GG L V+S+HSLEDRLVK+ A+ + + + + +T+ +P Sbjct: 254 VASLAVGGRLAVLSYHSLEDRLVKQVLAAGAASTAPPGLPVVPERYQPRLKLLTRGAELP 313 Query: 296 TQEDVAFNRRSRSAKLRAGMRTVERSIE 323 T+E+VA NRR+ A+LR R E E Sbjct: 314 TEEEVAENRRAAPARLRGAQRIREEHQE 341 >gi|224368376|ref|YP_002602539.1| S-adenosyl-methyltransferase MraW [Desulfobacterium autotrophicum HRM2] gi|263447343|sp|C0Q8N5|RSMH_DESAH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|223691092|gb|ACN14375.1| MraW [Desulfobacterium autotrophicum HRM2] Length = 312 Score = 349 bits (896), Expect = 3e-94, Method: Composition-based stats. Identities = 110/309 (35%), Positives = 164/309 (53%), Gaps = 10/309 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGY---SRSFCKMGSNVIALDRDPFAVSCGQ 75 +H V+ +V L+ PG+ +D T G G+ S + +I +D+D A+ Sbjct: 4 EHRSVMPREVRDGLDLKPGETCVDCTLGGSGHAVTSLAAVLPNGRLIGIDQDLDAIENAH 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 D S+F FS L + KGVDG++ DLG+S Q+ G RGFSF+ P Sbjct: 64 RVFADDMANVSIFHDNFSHLPAILDSLGIKGVDGILLDLGLSLHQLRKGQRGFSFKGDEP 123 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + ++A+D+VN + L I GEEK + +IA AIV++R SAP +L Sbjct: 124 LDMRMDMRTALTAADLVNTLEERALVDIFFKYGEEKMSRKIARAIVRQRASAPITRNCEL 183 Query: 192 SSLIQKTVYFS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 + +++ + +IHPATR FQALRI VN E+E+L + L + L GG + ++S Sbjct: 184 AEIVRAAIPAKIVHQQKIHPATRVFQALRISVNRELEQLERFLETFVDFLNPGGRICIIS 243 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK+ F + R +S+TK+ V+PT E++ N +RS Sbjct: 244 FHSLEDRMVKRRFRALEQGCTCPRDFPECVCGFKPRLKSVTKRAVMPTPEEIEINPMARS 303 Query: 309 AKLRAGMRT 317 A+LR R Sbjct: 304 ARLRVAWRV 312 >gi|325203518|gb|ADY98971.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis M01-240355] Length = 316 Score = 349 bits (896), Expect = 3e-94, Method: Composition-based stats. Identities = 112/308 (36%), Positives = 167/308 (54%), Gaps = 10/308 (3%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRD 80 +L + + L V +D TFG GG+SR +I D+DP A++ +E + Sbjct: 1 MLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFDKDPQAIAVAEE-LAR 59 Query: 81 YKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 ++ + F+ Q + G VDG +FDLG+SS QID G RGFSF+ PLDMRM Sbjct: 60 SDKRVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGSRGFSFRFDAPLDMRM 119 Query: 138 SCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 + G+SA++ + A+ +DL ++ GEE+ + +IA AIV +R +P TT+ L+ ++ Sbjct: 120 DTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRAESPIDTTRKLAQIVA 179 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 + V + + PATR+FQA+RIF+N E+EE+ L LK GG L V++FHSLEDR Sbjct: 180 QNVRTRERGQ-DPATRTFQAVRIFINRELEEVGAVLPQVMCRLKEGGRLAVIAFHSLEDR 238 Query: 257 LVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 +VK+F S R A P I + + P + ++A N R+RSA LR Sbjct: 239 IVKQFVKKYSQHAPLPRWAAVREADLPEPPLKIAGRALKPGEAEIAANPRARSAVLRVAE 298 Query: 316 RTVERSIE 323 RT E Sbjct: 299 RTAGPIPE 306 >gi|254281944|ref|ZP_04956912.1| S-adenosyl-methyltransferase MraW [gamma proteobacterium NOR51-B] gi|219678147|gb|EED34496.1| S-adenosyl-methyltransferase MraW [gamma proteobacterium NOR51-B] Length = 306 Score = 349 bits (896), Expect = 4e-94, Method: Composition-based stats. Identities = 117/304 (38%), Positives = 172/304 (56%), Gaps = 7/304 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H VLLE+ + L +D T+G GG+SR +I D+DP A E Sbjct: 5 HRSVLLEEAVTALITTADGTYVDGTYGRGGHSRRVLAALSEAGRLIGFDKDPEAAVHA-E 63 Query: 77 TMRDYKEQFSLFQATFSQLQDY-VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + +FS F +F+ + D P++G GV+ DLGVSS Q+D G+RGFSFQ GPLDM Sbjct: 64 DLAATDSRFSFFHRSFADIPDIKRPEQGFSGVLLDLGVSSPQLDNGERGFSFQSDGPLDM 123 Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM S G++A+ +N+A + +L ++ GEE+ A+RIA+AI+ R+ P + T L+ + Sbjct: 124 RMDSSSGVTAAVWINKAPLAELIQVFRDYGEERFATRIANAIIDAREETPIERTGRLAQI 183 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 ++ + ++ HPATR FQA+RIF+N E+E+L L L GG L+V+SFHSLE Sbjct: 184 VKVAHPRWEPHK-HPATRVFQAIRIFINRELEDLESVLVRVIDTLDVGGRLVVISFHSLE 242 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 DR+VK+F S V R + +A + K V P+ E++A N R+RSA +R Sbjct: 243 DRIVKRFMRDESRGVSVPRGVPIRDADMGRRLRVVGKAVKPSTEELANNPRARSAVMRVA 302 Query: 315 MRTV 318 R Sbjct: 303 ERLA 306 >gi|300788105|ref|YP_003768396.1| S-adenosyl-methyltransferase [Amycolatopsis mediterranei U32] gi|299797619|gb|ADJ47994.1| S-adenosyl-methyltransferase [Amycolatopsis mediterranei U32] Length = 317 Score = 349 bits (896), Expect = 4e-94, Method: Composition-based stats. Identities = 115/315 (36%), Positives = 172/315 (54%), Gaps = 10/315 (3%) Query: 16 TIGDHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFA 70 T +HVPVLL +++ L P V++DAT G GG+S + + + +ALDRDP A Sbjct: 2 TAPEHVPVLLSRIVELFTPVFTDRDGVLVDATVGLGGHSDALLEAFPRLRLVALDRDPAA 61 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSF 127 + E + + ++ + L + + G+ DG++FDLGVSSMQ+D +RGF++ Sbjct: 62 LEKSAERLARHGDRVDFVHTVYDGLPEALESVGLEKADGILFDLGVSSMQLDRAERGFAY 121 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 K PLDMRM + G +A+DV+N +L RIL GEE+ A RI A+V R+ PF Sbjct: 122 SKDSPLDMRMDPTTGFTAADVLNTYAPGELIRILRDYGEERFAQRIVKAVVAAREKEPFT 181 Query: 187 TTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 T+ L L+ V + + HPA R+FQALRI VN E+E L + + +A AL GG + Sbjct: 182 TSGRLVELLYDAVPAATRRTGGHPAKRTFQALRIEVNGELEVLRRAMPAALGALPVGGRI 241 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 +V S+ SLEDRLVK+ A + + H + +T+ +E++ N R Sbjct: 242 VVESYQSLEDRLVKQALAELAKSRTPEGLPVELPGHGPELKLLTRGAEKAGEEEIERNPR 301 Query: 306 SRSAKLRAGMRTVER 320 + S +LRA R E Sbjct: 302 AASVRLRAAERIGEP 316 >gi|148657877|ref|YP_001278082.1| S-adenosyl-methyltransferase MraW [Roseiflexus sp. RS-1] gi|262826166|sp|A5UZS9|RSMH_ROSS1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|148569987|gb|ABQ92132.1| S-adenosyl-methyltransferase MraW [Roseiflexus sp. RS-1] Length = 313 Score = 349 bits (896), Expect = 4e-94, Method: Composition-based stats. Identities = 112/306 (36%), Positives = 166/306 (54%), Gaps = 22/306 (7%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 H PVLL +V+A L P PG +D T G GG++ + + ++ +D DP A++ Sbjct: 22 HHTPVLLAEVVAGLLPRPGGRYIDGTVGGGGHAAAILEASSPDGRLLGIDCDPAALAAAA 81 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + Y ++ +L + +F ++ G V+GVV DLGVSS Q+D +RGFSFQ P Sbjct: 82 ARLAPYGDRVTLVRGSFREIGQLAATSGFVQVEGVVLDLGVSSYQLDTPERGFSFQAHAP 141 Query: 133 LDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMR+ +A+ +VN ++L ++ GEE+ + RIA AIV+ RQ P TT +L Sbjct: 142 LDMRLDPDAPVTAAHLVNNLPEQELADLIFRYGEERGSRRIARAIVEARQRKPVTTTDEL 201 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++++ + + + RIHPATR+FQALRI VNNE+ L L L GG + +++FH Sbjct: 202 AAIVTRAL-GGQRGRIHPATRTFQALRIAVNNELASLEAALPQIIDLLAPGGRMAIIAFH 260 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+VK + A IT+K V + E+ N RSRSA+L Sbjct: 261 SLEDRIVKHTLR--------------AEAQAGRLHIITRKPVEASIEEQRANPRSRSARL 306 Query: 312 RAGMRT 317 R R Sbjct: 307 RVAERV 312 >gi|288939887|ref|YP_003442127.1| S-adenosyl-methyltransferase MraW [Allochromatium vinosum DSM 180] gi|288895259|gb|ADC61095.1| S-adenosyl-methyltransferase MraW [Allochromatium vinosum DSM 180] Length = 339 Score = 349 bits (896), Expect = 4e-94, Method: Composition-based stats. Identities = 118/305 (38%), Positives = 168/305 (55%), Gaps = 10/305 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H PVLLE+ ++ L + +D TFG GG+SR+ ++ DRDP AV+ G+ Sbjct: 35 HKPVLLEESVSALLVQSDGIYVDGTFGRGGHSRAILARLGAAGRLLGFDRDPEAVAVGRA 94 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVD----GVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +FS+ Q +F+ + + + GVD G++ DLGVSS Q+D +RGFSF GP Sbjct: 95 -LAAQDPRFSIHQGSFADIGRLLDEAGVDARLNGLLLDLGVSSPQLDTPERGFSFMAEGP 153 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM SG SA+ + +A ++ +L GEE+ A+RIA AIV+ R P +TT L Sbjct: 154 LDMRMDPDSGESAAQWLARAEQGEIATVLHEFGEERFANRIARAIVETRTQTPIRTTAQL 213 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + L+ + V + + HPATR+FQA+RI VN E+E L + L L GG L V+SFH Sbjct: 214 AELVARAVPRREPGK-HPATRTFQAVRIQVNGELEALRRCLDQVCDRLAVGGRLAVISFH 272 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDRLVK+F + + + K V P+ + A N R+RSA L Sbjct: 273 SLEDRLVKRFIRREAKGPELPKGVPARAVEVQGRLRPVGKSVRPSTAEEALNPRARSAIL 332 Query: 312 RAGMR 316 R R Sbjct: 333 RVAER 337 >gi|328881795|emb|CCA55034.1| rRNA small subunit methyltransferase H [Streptomyces venezuelae ATCC 10712] Length = 318 Score = 349 bits (895), Expect = 4e-94, Method: Composition-based stats. Identities = 123/310 (39%), Positives = 188/310 (60%), Gaps = 10/310 (3%) Query: 20 HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 HVPV+L++ + +L P PG V++D T G GG+S + + ++ALDRD A+ Sbjct: 6 HVPVMLQRCLDMLAPALERPGAVVVDCTLGLGGHSEALLRRFPEARLVALDRDKEALRLS 65 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E + Y E+ +L A + +L + + G VDGV+FDLGVSSMQ+D DRGF++ + Sbjct: 66 GERLAPYGERATLVHAVYDELPEVLDRLGLATVDGVLFDLGVSSMQLDEADRGFAYAQDA 125 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + GISA++V+N +L RIL GEEKQA RI AIV+ R+ PF + Sbjct: 126 PLDMRMDQTTGISAAEVLNTYAPGELVRILRAYGEEKQAKRIVSAIVREREKEPFSNSAR 185 Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L LI++++ +K +PA R+FQALRI VN E++ + + + +A KA+ GG ++V+S Sbjct: 186 LVELIRESLPQAAKRTGGNPAKRTFQALRIEVNRELDSVEKAIPAAVKAIGVGGRVVVLS 245 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 + SLEDR+VK+ FA+ + + + + +T+ +PT+E+VA NRR+ A Sbjct: 246 YQSLEDRIVKQVFAAGAATTAPPGLPVVPEKYQPRLKLLTRGAELPTEEEVAENRRAAPA 305 Query: 310 KLRAGMRTVE 319 +LR R E Sbjct: 306 RLRGAERIRE 315 >gi|50086346|ref|YP_047856.1| S-adenosyl-methyltransferase MraW [Acinetobacter sp. ADP1] gi|54036183|sp|Q6F7D1|RSMH_ACIAD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|49532322|emb|CAG70034.1| S-adenosylmethionine methyltransferase [Acinetobacter sp. ADP1] Length = 303 Score = 349 bits (895), Expect = 4e-94, Method: Composition-based stats. Identities = 107/308 (34%), Positives = 166/308 (53%), Gaps = 16/308 (5%) Query: 20 HVPVLLEKVIALL-NPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 H+ VLL + + L + +D TFG GG++R + V D+DP A++ Sbjct: 3 HISVLLHETVDALLANRDTGIYIDGTFGRGGHTRLLLSKLGSDAQVYGFDKDPQALAVAH 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + +F + A+F+ +Q + +G V+GV+ DLGVSS Q+D +RGFSF + GP Sbjct: 63 Q-LEQEDLRFKIIHASFADIQTELEQRGITQVEGVMADLGVSSPQLDQAERGFSFMQDGP 121 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G +A++ + + L I+ GEE+ + RIA AI + +TT L Sbjct: 122 LDMRMDNSQGKTAAEWLLSIEEEALANIIYQYGEERYSRRIARAIKQA---GALETTAQL 178 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + L++ + ++ HPATR+FQA+RI +N E+E++ L A LK G L V++FH Sbjct: 179 AELVKTAHPKWEKHK-HPATRTFQAIRIAINKELEDIEIFLPQAVTLLKPEGRLAVITFH 237 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNA-HPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDRL+K+F S +P + I++ + ++E+V N RSRSA Sbjct: 238 SLEDRLIKQFIQKESTLPEDSGWGLPQKQVDSRRLKKISR--IRASEEEVKANPRSRSAW 295 Query: 311 LRAGMRTV 318 LR R V Sbjct: 296 LRVAERLV 303 >gi|19705032|ref|NP_602527.1| S-adenosyl-methyltransferase MraW [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|21759278|sp|Q8R6F5|RSMH_FUSNN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|19712944|gb|AAL93826.1| Methyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 314 Score = 349 bits (895), Expect = 5e-94, Method: Composition-based stats. Identities = 107/306 (34%), Positives = 170/306 (55%), Gaps = 10/306 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+PVL + + L P +D T G G +S + S+ +I++D+D A+ ++ Sbjct: 9 HIPVLYYETLDNLVINPDGTYIDCTLGGGSHSEGILERLSDKGLLISIDQDTNAIEYSKK 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + ++ +F+ F + GVD G++ D+GVSS Q+D DRGFS++ L Sbjct: 69 RLEKFGSKWKVFKGNFENIDTIAYMAGVDKVDGILMDIGVSSKQLDDPDRGFSYRYDVKL 128 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ ISA DVVN + + L++I+ GEE+ A +IA IV+ R+S+P + T DL Sbjct: 129 DMRMNTDQKISAYDVVNTYSEEQLSKIIFEYGEERHARKIAKLIVEERKSSPIEKTSDLI 188 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +LI++ + HPA ++FQA+RI VN E+E L + A + LK GG L +++FHS Sbjct: 189 TLIKRAYP--ERASKHPAKKTFQAIRIEVNRELEVLENAMSKAVELLKVGGRLAIITFHS 246 Query: 253 LEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK F + + I F+ ITKK ++P +++ N R+ S+KL Sbjct: 247 LEDRIVKNKFKDLATACKCPKDIPICVCGGVKKFEIITKKPIIPIDDELKNNNRAHSSKL 306 Query: 312 RAGMRT 317 R R Sbjct: 307 RILERI 312 >gi|254426992|ref|ZP_05040699.1| S-adenosyl-methyltransferase MraW [Alcanivorax sp. DG881] gi|196193161|gb|EDX88120.1| S-adenosyl-methyltransferase MraW [Alcanivorax sp. DG881] Length = 312 Score = 349 bits (895), Expect = 5e-94, Method: Composition-based stats. Identities = 113/313 (36%), Positives = 168/313 (53%), Gaps = 8/313 (2%) Query: 12 AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDP 68 +T +H PV+LE+V+ + +D TFG GG+SR+ + +DRDP Sbjct: 2 TTENTQYEHQPVMLEEVLDMWFSQSEGFYVDGTFGRGGHSRALLARLDDNGRLAGIDRDP 61 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFS 126 A++ GQE + +F + F L V G +DG++ DLGVSS Q+D RGFS Sbjct: 62 QAIAAGQE-LAASDSRFHMVANRFDCLPQVVEQAGRPIDGLLLDLGVSSPQLDDAARGFS 120 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 F + GPLDMRM + G S ++ ++ A KD+ +L GEE+++ IA I R+ P Sbjct: 121 FLRDGPLDMRMDPTQGESVAEWLSHAAEKDIANVLYRYGEERKSRWIAKRICDTRKEQPI 180 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 T L++LI+ + ++ + HPATRSFQALRI +N E++ L Q L + + L GG L Sbjct: 181 TRTLQLANLIESVLGRNEQGK-HPATRSFQALRIHINGELDALNQVLEQSLETLAIGGRL 239 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 ++SFHSLEDR+VK F SG+ R +P K + ++ ++ N R Sbjct: 240 AIISFHSLEDRIVKLFIRDHSGRAPKGRGGLPLGNEMPQRLEPVGKAMRASKAELKVNVR 299 Query: 306 SRSAKLRAGMRTV 318 SRSA LR + Sbjct: 300 SRSAVLRVAEKVA 312 >gi|212213353|ref|YP_002304289.1| S-adenosyl-methyltransferase MraW [Coxiella burnetii CbuG_Q212] gi|263447408|sp|B6J2R7|RSMH_COXB2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|212011763|gb|ACJ19144.1| S-adenosyl-methyltransferase [Coxiella burnetii CbuG_Q212] Length = 307 Score = 349 bits (895), Expect = 5e-94, Method: Composition-based stats. Identities = 117/305 (38%), Positives = 178/305 (58%), Gaps = 11/305 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H PVL ++V+ L P + +D TFG GG+S + ++A+D+DP AV+ + Sbjct: 4 HKPVLFDEVMEGLAIRPDGIYVDGTFGRGGHSFGILQRLGPNGRLMAMDKDPDAVAVENK 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + + S+ TF+ LQ V D+G V+G++ D+GVSS Q++ RGFSF K GP Sbjct: 64 ALFE-DARLSIVHETFANLQKAVRDRGWEGKVNGILLDIGVSSPQLEDAKRGFSFSKDGP 122 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ + A+ +NQA ++D+ R+L GEE+ A RIA AIV R+ P TQ+L Sbjct: 123 LDMRMNPKQSMDAASWINQAAMEDIRRVLWNYGEERFAKRIAQAIVNAREEKPITRTQEL 182 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 S ++ K + + HPATR+FQA+RIF+N E++EL + L + L GG L V+SFH Sbjct: 183 SDIVIKAYP-QREIKKHPATRTFQAIRIFINRELDELRECLPQCLETLAVGGRLCVISFH 241 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDRLVK+F S + I + + + ++ PT+ ++ N R+RSA+L Sbjct: 242 SLEDRLVKRFIQKESRDHLPREIPILAKDIKHRLKPLGS-LIRPTEAEIKKNPRARSARL 300 Query: 312 RAGMR 316 R + Sbjct: 301 RIVEK 305 >gi|166365785|ref|YP_001658058.1| S-adenosyl-methyltransferase MraW [Microcystis aeruginosa NIES-843] gi|263456493|sp|B0JKS7|RSMH_MICAN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|166088158|dbj|BAG02866.1| S-adenosyl-L-methionine-dependent methyltransferase [Microcystis aeruginosa NIES-843] Length = 292 Score = 349 bits (895), Expect = 5e-94, Method: Composition-based stats. Identities = 118/305 (38%), Positives = 174/305 (57%), Gaps = 27/305 (8%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76 H+ VL +++IA LN PG LD T G GG+SR + V A+DRD A+ + Sbjct: 6 PHISVLSQELIAGLNIQPGGHYLDLTLGGGGHSRLLLEAHPETTVTAIDRDQSALEAAKI 65 Query: 77 TMRDY-KEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 ++ Y + +L+ F+ + DG++ DLGVSS Q D +RGFSF+ + LDM Sbjct: 66 SLAPYLDSRLTLWWGNFADYDG--QNSSFDGIIADLGVSSPQFDQSERGFSFRHTAALDM 123 Query: 136 RMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM C ++A+D++N + K+L + GEE+ + IA +IV++R PF TT +L+++ Sbjct: 124 RMDRCQSLTAADIINHWHEKELADLFYQYGEERLSRPIARSIVQKR---PFTTTTELAAV 180 Query: 195 IQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 I +V S + RIHPATR FQALRI VN E++ L Q L A LK+ G++ ++SFHSL Sbjct: 181 IASSVPASYRYGRIHPATRVFQALRIAVNQELDSLQQLLDQAPHWLKSRGIIAMISFHSL 240 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 EDRL+K F + + ITKK ++P++E+ A N RSRSAKLR Sbjct: 241 EDRLIKYGFRENNS-----------------LKIITKKPIIPSREEQAKNPRSRSAKLRI 283 Query: 314 GMRTV 318 + Sbjct: 284 AQKIE 288 >gi|329115569|ref|ZP_08244291.1| Ribosomal RNA small subunit methyltransferase H [Acetobacter pomorum DM001] gi|326694997|gb|EGE46716.1| Ribosomal RNA small subunit methyltransferase H [Acetobacter pomorum DM001] Length = 335 Score = 349 bits (895), Expect = 5e-94, Method: Composition-based stats. Identities = 134/318 (42%), Positives = 185/318 (58%), Gaps = 14/318 (4%) Query: 12 AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFA 70 T H+PV+L +V+ L PA G ILD TFG GGYS + K NV +DRDP A Sbjct: 8 TPPETAQGHIPVMLPEVLEYLYPADGGRILDCTFGGGGYSSAILKSADCNVWGIDRDPDA 67 Query: 71 VSCGQETMRDYK-----EQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGD 122 ++ GQ R + + + Q +F +Q G+ DG+V DLGVSS Q+D D Sbjct: 68 IARGQALSRHFPAANGTSRLHMLQGSFGNMQALASAAGISTFDGIVLDLGVSSFQLDEAD 127 Query: 123 RGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 RGFSF+ GPLDMRM SG SA+D+VN+A +L I GEE+ A R+A A+V R Sbjct: 128 RGFSFRMEGPLDMRMEKSGPSAADIVNKAPEAELADIFHFYGEERHARRLARAVVNARSE 187 Query: 183 APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 PF+TT L++L++ + + + I ATR+FQ LRI VN+E+ E+ +GL A L G Sbjct: 188 MPFETTTQLANLVRSVIPKDR-SGIDSATRAFQGLRIAVNDELGEIERGLEQALDMLAPG 246 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP----SNAHPAVFQSITKKVVVPTQE 298 G L+VVSFHSLEDR+ K+ +GK + P + A A F ++T K PT Sbjct: 247 GRLVVVSFHSLEDRIAKRMVQHATGKDKSFSRYDPRAAGTPAPEADFVALTHKARRPTDT 306 Query: 299 DVAFNRRSRSAKLRAGMR 316 + ++N R+RSA+LRA M+ Sbjct: 307 ECSYNPRARSARLRAVMK 324 >gi|255533217|ref|YP_003093589.1| S-adenosyl-methyltransferase MraW [Pedobacter heparinus DSM 2366] gi|255346201|gb|ACU05527.1| S-adenosyl-methyltransferase MraW [Pedobacter heparinus DSM 2366] Length = 301 Score = 349 bits (895), Expect = 5e-94, Method: Composition-based stats. Identities = 113/304 (37%), Positives = 157/304 (51%), Gaps = 16/304 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 HVPVLL I LN P V +D TFG GG+S K + +IA D+DP A Sbjct: 6 HVPVLLAACIDGLNIRPEGVYVDVTFGGGGHSIEILKKLGDKGVLIAFDQDPDAR----- 60 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +F F+ L++ + G VDG++ DLGVSS Q + +RGFS + L Sbjct: 61 RNEIDDPRFHFVDQNFAFLKNNLRLLGFKAVDGILADLGVSSHQFNEPERGFSTRFDAAL 120 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM G ++A++V+N L +I GI GE K A +A AIV R P T D Sbjct: 121 DMRMDKQGKLTAAEVLNTYTEDQLHKIFGIYGEVKNAKSLARAIVTGRVERPVLTLADFK 180 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++ + K ++ + FQALRI VN E+E L L +K GG L+V+S+HS Sbjct: 181 AVAAAHIPKGKEHK--YMAQVFQALRIEVNAEMEVLENFLSQTADVIKPGGRLVVMSYHS 238 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR VK F A + + + P F+++T+K +V E++ N R+RSAKLR Sbjct: 239 LEDRPVKNFIAKGKFRGEVDKDFFGNEQKP--FKAVTRKAIVADAEELERNSRARSAKLR 296 Query: 313 AGMR 316 G R Sbjct: 297 VGER 300 >gi|169632239|ref|YP_001705975.1| S-adenosylmethionine methyltransferase [Acinetobacter baumannii SDF] gi|263433355|sp|B0VPF9|RSMH_ACIBS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|169151031|emb|CAO99677.1| S-adenosylmethionine methyltransferase [Acinetobacter baumannii] Length = 307 Score = 348 bits (894), Expect = 5e-94, Method: Composition-based stats. Identities = 109/310 (35%), Positives = 171/310 (55%), Gaps = 16/310 (5%) Query: 20 HVPVLLEKVIA-LLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H+ VLL + + LL V +DATFG GG++ + V A D+DP A+ Sbjct: 3 HISVLLFETVESLLADRTTGVYIDATFGRGGHTHLLLSKLDENARVYAFDKDPQALEVA- 61 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F++ A+F+ +++ + + GV DG++ DLGVSS Q+D +RGFSF + GP Sbjct: 62 AALAQEDPRFTIIHASFADIKEKMQEIGVQSVDGIMADLGVSSPQLDQAERGFSFMQDGP 121 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G++A++ + + +DL I+ GEE+ + RIA AI + TT L Sbjct: 122 LDMRMDNSKGLTAAEWLLEVEEEDLANIIYQYGEERHSRRIARAIKQA---GKLDTTAQL 178 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +++ + ++ HPATR+FQA+RI +N E++++ L A LK G L V+SFH Sbjct: 179 AEIVKTAHPKWEKHK-HPATRTFQAIRIAINKELDDIEVFLPQAVDLLKPKGRLSVISFH 237 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNA-HPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDRL+K+F S +P + I++ V ++E+V N RSRSA Sbjct: 238 SLEDRLIKQFIQKESTLTEDSGWGMPQQQVDTRRLKKISR--VRVSEEEVKANPRSRSAW 295 Query: 311 LRAGMRTVER 320 LR R ++ Sbjct: 296 LRVAERLEQK 305 >gi|159045015|ref|YP_001533809.1| S-adenosyl-methyltransferase MraW [Dinoroseobacter shibae DFL 12] gi|263446387|sp|A8LSB5|RSMH_DINSH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|157912775|gb|ABV94208.1| S-adenosyl-L-methionine-dependent methyltransferase [Dinoroseobacter shibae DFL 12] Length = 333 Score = 348 bits (894), Expect = 6e-94, Method: Composition-based stats. Identities = 144/333 (43%), Positives = 195/333 (58%), Gaps = 5/333 (1%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRD 67 M +A H+PVLLE ++ P LD TFGAGGY+R + G+ VI +D+D Sbjct: 1 MVAAQDPPNAPHIPVLLEPILTRCAPIT-GTWLDGTFGAGGYARGLLEAGADRVIGVDQD 59 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 P A+ + DY ++ L F L + +DGVV DLGVSSMQ+D +RGFSF Sbjct: 60 PLALEMAADWAGDYGDRLRLVAGNFEALDAHAGGP-LDGVVLDLGVSSMQLDRAERGFSF 118 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM+ G SA+D+V + + L IL LGEE+ A RIA AIV R AP Sbjct: 119 LRDGPLDMRMAQHGRSAADLVAEEDADMLADILFHLGEERAARRIARAIVAARAVAPITR 178 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T L+ ++ + K + H ATRSFQALRI VN+E+ L +GL +AE AL+ GG L V Sbjct: 179 TSQLAEIVASCLPRPKPGQSHAATRSFQALRIAVNDELGALVRGLEAAEGALEPGGWLAV 238 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPS-NAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+FHS+EDR+VK+FF SG P PA F+ +K + PT+ +VA N R+ Sbjct: 239 VTFHSIEDRIVKRFFTQASGGAGRANRYAPETEDTPARFRLEPRKAIAPTEAEVAANPRA 298 Query: 307 RSAKLRAGMRTVERSI-EDDSFVHLPRLPTLSQ 338 RSA+LR G RT ++ D + + LP L TL++ Sbjct: 299 RSARLRIGRRTAAPAMPADRAALGLPHLYTLTE 331 >gi|89055260|ref|YP_510711.1| S-adenosyl-methyltransferase MraW [Jannaschia sp. CCS1] gi|122498265|sp|Q28NM6|RSMH_JANSC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|88864809|gb|ABD55686.1| methyltransferase [Jannaschia sp. CCS1] Length = 327 Score = 348 bits (894), Expect = 6e-94, Method: Composition-based stats. Identities = 143/330 (43%), Positives = 192/330 (58%), Gaps = 7/330 (2%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRD 67 M+ I H+PVLL ++ + P V LD TFGAGGY+R + G++ VI +DRD Sbjct: 1 MTDEIDK--APHIPVLLGAILREVAPVS-GVWLDGTFGAGGYARGLLEGGADTVIGVDRD 57 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 P A + Y + L + TFS L + D+ +DGV DLGVSSMQ+D +RGFSF Sbjct: 58 PLAFEMAADWAGSYGDALRLKEGTFSNLDT-LADEPLDGVALDLGVSSMQLDLAERGFSF 116 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + GPLDMRM G+SA D+VN A K L IL GEE+ A RIA AIV R + Sbjct: 117 MRDGPLDMRMGQIGVSAEDLVNDAPEKLLADILFQYGEERAARRIAKAIVAERLKCRINS 176 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T L+ +++K + K + HPATRSFQA+RI VN+E +LAQGL +AE+AL+ GG L V Sbjct: 177 TLQLAGIVEKCLPSKKPGQSHPATRSFQAIRIAVNDEFGQLAQGLMAAERALRPGGKLAV 236 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT-KKVVVPTQEDVAFNRRS 306 V+FHS EDR+VKKF + RS P A ++T +K + P +++A N R+ Sbjct: 237 VTFHSSEDRIVKKFMSERSSTGGGGSRYAPEAAAKVPGFTLTPRKAIPPDADEIARNTRA 296 Query: 307 RSAKLRAGMRTVERSIE-DDSFVHLPRLPT 335 RSAKLR RT + + LP+L Sbjct: 297 RSAKLRIATRTDAPAQPVAPETLGLPQLEG 326 >gi|256846119|ref|ZP_05551577.1| MraW methylase [Fusobacterium sp. 3_1_36A2] gi|256719678|gb|EEU33233.1| MraW methylase [Fusobacterium sp. 3_1_36A2] Length = 314 Score = 348 bits (894), Expect = 6e-94, Method: Composition-based stats. Identities = 105/308 (34%), Positives = 171/308 (55%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+PVL + + L P + +D T G G +S + S+ +I++D+D A+ ++ Sbjct: 9 HIPVLYYETLDNLVINPDGIYIDCTLGGGSHSEGILERLSDKGLLISIDQDTNAIEYSKK 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + ++ +F+ F + VDG++ D+GVSS Q+D RGFS++ L Sbjct: 69 RLEKFGSKWKVFKGNFENIDTIAYMASVDKVDGILMDIGVSSKQLDDPKRGFSYRYDVKL 128 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ ISA DVVN + + L++I+ GEE+ A +IA IV+ R+S+P + T DL Sbjct: 129 DMRMNTEQKISAYDVVNTYSEEQLSKIIFEYGEERHARKIAKLIVEERKSSPIEKTSDLI 188 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +LI++ + HPA ++FQA+RI VN E+E L + A + LK GG L +++FHS Sbjct: 189 ALIKRAYP--ERASKHPAKKTFQAIRIEVNRELEVLENAMSKAVELLKVGGRLAIITFHS 246 Query: 253 LEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK F + + I F+ ITKK ++P +++ N R+ S+KL Sbjct: 247 LEDRIVKNKFKDLATACKCPKDIPICVCGGVKKFEIITKKPIIPIDDELKNNNRAHSSKL 306 Query: 312 RAGMRTVE 319 R R ++ Sbjct: 307 RILERILD 314 >gi|86148532|ref|ZP_01066819.1| S-adenosyl-methyltransferase [Vibrio sp. MED222] gi|218708478|ref|YP_002416099.1| S-adenosyl-methyltransferase MraW [Vibrio splendidus LGP32] gi|263505899|sp|B7VIZ5|RSMH_VIBSL RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|85833678|gb|EAQ51849.1| S-adenosyl-methyltransferase [Vibrio sp. MED222] gi|218321497|emb|CAV17449.1| S-adenosyl-methyltransferase mraW [Vibrio splendidus LGP32] Length = 316 Score = 348 bits (894), Expect = 6e-94, Method: Composition-based stats. Identities = 113/323 (34%), Positives = 168/323 (52%), Gaps = 23/323 (7%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 M+ A H+ VLL + I L P +D TFG GG+SR+ + ++D Sbjct: 1 MTEAF-----KHISVLLNESIDGLAIKPDGTYIDGTFGRGGHSRTILSKLGENGRLFSID 55 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCG 121 RDP A++ Q+ +F++ FS + +Y VDGV+ DLGVSS Q+D Sbjct: 56 RDPQAIAEAQKI---DDPRFTIIHGPFSGMAEYAERYDLVGQVDGVLLDLGVSSPQLDDA 112 Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF K GPLDMRM + GI S + +A++ D+T ++ GE+K A RIA I+ + Sbjct: 113 ERGFSFMKDGPLDMRMDPTTGIPVSQWLVEADLDDITWVIREFGEDKHARRIAKGIIAYQ 172 Query: 181 QSA---PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 ++ P T L+ LI S + HPATR+FQA RI++N+E+EE+ L+ A Sbjct: 173 ENEENEPLTRTGQLAKLISDVAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAAS 232 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVV 293 L G + V+SFHSLEDR+VK+F S + + K + Sbjct: 233 ILAPQGRISVISFHSLEDRMVKRFIRKESQGPQVPHGLPLTEEQIKALGSADLKPIGKAI 292 Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316 P++++V N RSRS+ LR + Sbjct: 293 KPSKDEVDENTRSRSSVLRIAEK 315 >gi|329118760|ref|ZP_08247458.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Neisseria bacilliformis ATCC BAA-1200] gi|327465107|gb|EGF11394.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Neisseria bacilliformis ATCC BAA-1200] Length = 316 Score = 348 bits (894), Expect = 6e-94, Method: Composition-based stats. Identities = 120/313 (38%), Positives = 170/313 (54%), Gaps = 10/313 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPF 69 + HV VLL + + L V +D TFG GG+SR ++ D+DP Sbjct: 1 MSSEAFSHVSVLLHEAVDALAVVSDGVYVDGTFGRGGHSRLILSHLGANGRLVVFDKDPQ 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFS 126 AV+ +E + S+ FS Q + V DG +FDLG+SS QID G RGFS Sbjct: 61 AVAAARELAAQ-DGRVSVVHDGFSCFQTALDALNVGQIDGALFDLGISSPQIDDGSRGFS 119 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 F+ PLDMRM + G+SA++ + A+ ++ ++ GEE+ A +IA AIV +R + P Sbjct: 120 FRFDAPLDMRMDTTRGMSAAEWLAAADEDEICEVIRNYGEERFARQIARAIVAQRGTNPI 179 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT L+ + + V + + PATR+FQA+RIF+N E+EE+A L A LK+GG L Sbjct: 180 DTTGKLAQVAAQNVRTRERGQ-DPATRTFQAVRIFINRELEEIAAALPQAAGRLKSGGRL 238 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNR 304 V+SFHSLEDR+VK+FF S R + A P ++ K V + +VA N Sbjct: 239 AVISFHSLEDRIVKQFFRRHSEHEPLPRWAMVREADLPQPPLALVGKAVKASAAEVAANP 298 Query: 305 RSRSAKLRAGMRT 317 R+RSA LR RT Sbjct: 299 RARSAVLRVARRT 311 >gi|297199072|ref|ZP_06916469.1| MraW methylase [Streptomyces sviceus ATCC 29083] gi|197715975|gb|EDY60009.1| MraW methylase [Streptomyces sviceus ATCC 29083] Length = 318 Score = 348 bits (894), Expect = 7e-94, Method: Composition-based stats. Identities = 125/310 (40%), Positives = 183/310 (59%), Gaps = 10/310 (3%) Query: 20 HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 HVPV+L++ + LL P PG V++D T G GG+S + + +IALDRD A+ Sbjct: 6 HVPVMLQRCLDLLAPALERPGSVVVDCTLGLGGHSEALLQRFPEARLIALDRDKEALRLS 65 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E + + E+ +L A + +L D + G V GV+FDLGVSSMQ+D DRGF++ + Sbjct: 66 GERLAPFGERATLVHAVYDELPDVLDRLGIARVQGVLFDLGVSSMQLDEADRGFAYAQDA 125 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + G+SA++V+N +L RIL GEEKQA RI AIV+ R PF + Sbjct: 126 PLDMRMDQTTGMSAAEVLNTYPAGELVRILRAYGEEKQAKRIVSAIVRERDKEPFTNSAR 185 Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L LI+ ++ +K +PA R+FQALRI VN E+ L + + +A KAL GG + V+S Sbjct: 186 LVELIRDSLPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVKALAVGGRIAVLS 245 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 +HSLEDRLVK+ FA+ + + + + +T+ +PT+E++A NRR+ A Sbjct: 246 YHSLEDRLVKQVFAAGAATTAPPGLPVVPERYQPRLKLLTRGAELPTEEEIAENRRAAPA 305 Query: 310 KLRAGMRTVE 319 + R R E Sbjct: 306 RCRGAERIRE 315 >gi|221194757|ref|ZP_03567814.1| S-adenosyl-methyltransferase MraW [Atopobium rimae ATCC 49626] gi|221185661|gb|EEE18051.1| S-adenosyl-methyltransferase MraW [Atopobium rimae ATCC 49626] Length = 328 Score = 348 bits (894), Expect = 7e-94, Method: Composition-based stats. Identities = 112/309 (36%), Positives = 169/309 (54%), Gaps = 12/309 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H PV+L +V+ LNP PG+++ D T G G++ K I +D+D A Sbjct: 12 HQPVMLAEVLQQLNPKPGEIVCDCTLGGAGHTVELAKRIVPDGLSIGIDQDDMAHEAAAA 71 Query: 77 TMRDYKE--QFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +F + F L + GVD +FD+GVSS Q+D +RGFS+ + Sbjct: 72 RIAKEVPTAEFLPLKGNFGDLDTLLVSAEVPGVDCFLFDIGVSSPQLDIPERGFSYHEDA 131 Query: 132 PLDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM +A +VVN DLTRIL + G+E A RIAH IV+ R++AP +TT Sbjct: 132 PLDMRMDPGKQTPTAQEVVNTYTEADLTRILRVFGDETFAPRIAHRIVEVRKTAPIKTTL 191 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L +I+ ++ + + + HPA ++FQALRI VN+E++ L +GLRSA GG + V+ Sbjct: 192 QLVEVIKASIPAAARRHGGHPARKTFQALRIEVNHELDVLERGLRSAIAWANPGGRICVI 251 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 ++HSLEDR+VK F+ S + + H + TKK + T E++ N R+R Sbjct: 252 AYHSLEDRIVKHVFSELSQGCICPPDLPVCVCGHVPIVDVKTKKPLTATSEEITQNPRAR 311 Query: 308 SAKLRAGMR 316 SA +R ++ Sbjct: 312 SALMRVAVK 320 >gi|84394442|ref|ZP_00993158.1| S-adenosyl-methyltransferase [Vibrio splendidus 12B01] gi|84374941|gb|EAP91872.1| S-adenosyl-methyltransferase [Vibrio splendidus 12B01] Length = 316 Score = 348 bits (894), Expect = 7e-94, Method: Composition-based stats. Identities = 112/323 (34%), Positives = 168/323 (52%), Gaps = 23/323 (7%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 M+ A H+ VLL + I L P +D TFG GG+SR+ + ++D Sbjct: 1 MTEAF-----KHISVLLNESIDGLAIKPDGTYIDGTFGRGGHSRTILSKLGENGRLFSID 55 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCG 121 RDP A++ Q+ +F++ FS + +Y VDGV+ DLGVSS Q+D Sbjct: 56 RDPQAIAEAQKI---DDPRFTIIHGPFSGMAEYAERYDLVGQVDGVLLDLGVSSPQLDDA 112 Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF K GPLDMRM + G+ S + +A++ D+T ++ GE+K A RIA I+ + Sbjct: 113 ERGFSFMKDGPLDMRMDPTTGVPVSQWLVEADLDDITWVIREFGEDKHARRIAKGIIAYQ 172 Query: 181 QSA---PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 ++ P T L+ LI S + HPATR+FQA RI++N+E+EE+ L+ A Sbjct: 173 ENEENEPLTRTGQLAKLISDVAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAAS 232 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVV 293 L G + V+SFHSLEDR+VK+F S + + K + Sbjct: 233 ILAPQGRISVISFHSLEDRMVKRFIRKESQGPQVPHGLPLTEDQIKALGSADLKPIGKAI 292 Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316 P++++V N RSRS+ LR + Sbjct: 293 KPSKDEVDENTRSRSSVLRIAEK 315 >gi|330469297|ref|YP_004407040.1| 16S rRNA m(4)C1402 methyltranserfase [Verrucosispora maris AB-18-032] gi|328812268|gb|AEB46440.1| 16S rRNA m(4)C1402 methyltranserfase [Verrucosispora maris AB-18-032] Length = 394 Score = 348 bits (893), Expect = 8e-94, Method: Composition-based stats. Identities = 116/333 (34%), Positives = 186/333 (55%), Gaps = 11/333 (3%) Query: 2 ESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGK----VILDATFGAGGYSRSFCKM 57 E K + + G HVPVLLE+ + LL PA G+ V +DAT G G++ + + Sbjct: 18 EENKVKPVGVDMGELRGTHVPVLLERCLELLAPALGRGGRTVHVDATLGLAGHAEAVLQA 77 Query: 58 GSN--VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLG 112 ++ LDRD A+ + + + ++ L A + +L + + G VDG++FDLG Sbjct: 78 HPETILVGLDRDTEALEHARVRLARFADRVHLEHAVYDELPEVLDRLGYPTVDGILFDLG 137 Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASR 171 VSS+Q+D DRGF++ + PLDMRM + G++A +VVN +L R+L + GEEK A R Sbjct: 138 VSSLQLDAPDRGFAYAQDAPLDMRMDQTRGVTAEEVVNTYTHPELARVLRVYGEEKFAGR 197 Query: 172 IAHAIVKRRQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQ 230 IA AI++ R+ ++ L+ L+++++ ++ HPA R+FQALRI VN E+ L Sbjct: 198 IASAIIRERERVRITSSARLAELVRESIPAPARRTGGHPAKRTFQALRIEVNRELAVLET 257 Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK 290 L +A L GG L+V+S+HSLEDRL K+ A R + + F+ +++ Sbjct: 258 ALPAALDRLSVGGRLVVLSYHSLEDRLTKQALADRVRSTGPIDLPVELPGSEPTFRLLSR 317 Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIE 323 +P + +VA N R+ S +LRA R ++ + Sbjct: 318 GAELPGEAEVAANPRAASVRLRAAERIDPQARQ 350 >gi|308271432|emb|CBX28040.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [uncultured Desulfobacterium sp.] Length = 312 Score = 348 bits (893), Expect = 8e-94, Method: Composition-based stats. Identities = 103/308 (33%), Positives = 168/308 (54%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H+PV+ ++VI L+ PGK+ D T G G++++ C+ ++ +D+D A+ ++ Sbjct: 5 HIPVMTKEVIHYLDCKPGKIYADCTIGGSGHAKAICEKIMPNGILVGIDQDKDAIENAKK 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + LF F L +++ VDG+V DLG+S QID RGFSF+ + PL Sbjct: 65 ILFPHLPNIHLFHGNFVNLSEFLLKCNITKVDGIVLDLGLSLHQIDSSKRGFSFKNTEPL 124 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ S I+A +++N+ + +L +++ GEE A IA IVK R+ +T +L Sbjct: 125 DMRMNTDSDINAGNLINKLDEVNLWKLIRDYGEEPWARNIARNIVKARKDCEIKTNAELV 184 Query: 193 SLIQKTVYFSK--NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I ++ +IHPATR F ALRI VNNE+E L++ + + L G L V++F Sbjct: 185 KIISDSIPKKIQYKQKIHPATRVFMALRIAVNNELERLSEFMDNVADLLNPEGRLCVLTF 244 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK+ + + + + +++ KK + P +E+ N +RSA Sbjct: 245 HSLEDRIVKQKIREMEKECVCPPNFPKCICNKIKLVRAVNKKAIAPGKEETDINPMARSA 304 Query: 310 KLRAGMRT 317 KLR R Sbjct: 305 KLRVAERI 312 >gi|83949459|ref|ZP_00958192.1| S-adenosyl-methyltransferase MraW [Roseovarius nubinhibens ISM] gi|83837358|gb|EAP76654.1| S-adenosyl-methyltransferase MraW [Roseovarius nubinhibens ISM] Length = 314 Score = 348 bits (893), Expect = 8e-94, Method: Composition-based stats. Identities = 140/313 (44%), Positives = 192/313 (61%), Gaps = 6/313 (1%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYK 82 ++E +IA + P LD T GAGGY+R G++ VI +DRDP A + +Y Sbjct: 1 MIEPLIAEVAPVT-GTWLDGTLGAGGYTRYLLAAGADKVIGVDRDPLAHDLAAQWGAEYG 59 Query: 83 EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI 142 ++ L + FS++ DY D +DGVV DLGVSSMQ+D RGFSFQK GPLDMRMS G Sbjct: 60 DRLELVRGVFSKMDDYATD--LDGVVLDLGVSSMQLDQPMRGFSFQKDGPLDMRMSQEGE 117 Query: 143 SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS 202 +A+ +VN A+ DL IL + GEE+ + RIA AIV+ R+ A TT LS +++K + Sbjct: 118 TAAHIVNSADEGDLADILFLYGEERASRRIARAIVRAREEAAIVTTLQLSEIVEKCLPRP 177 Query: 203 KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF 262 K + HPATRSFQALRI VN+E ELA+GL +AE+ALK GG L VV+FHS+EDR+VK+F Sbjct: 178 KPGQAHPATRSFQALRIAVNDEYGELAEGLAAAERALKPGGKLAVVTFHSIEDRMVKRFI 237 Query: 263 ASR-SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERS 321 SR G RH + F +++K ++ ++ N R+RSA+LR RT Sbjct: 238 QSRLGGAGRGSRHAPETIEVAPQFTQVSRKATSASEAEIDRNPRARSARLRVATRTDAPP 297 Query: 322 IE-DDSFVHLPRL 333 D + +P+L Sbjct: 298 APLDRRAIGMPQL 310 >gi|226953729|ref|ZP_03824193.1| S-adenosylmethionine methyltransferase [Acinetobacter sp. ATCC 27244] gi|294651784|ref|ZP_06729082.1| S-adenosylmethionine methyltransferase [Acinetobacter haemolyticus ATCC 19194] gi|226835517|gb|EEH67900.1| S-adenosylmethionine methyltransferase [Acinetobacter sp. ATCC 27244] gi|292822341|gb|EFF81246.1| S-adenosylmethionine methyltransferase [Acinetobacter haemolyticus ATCC 19194] Length = 307 Score = 348 bits (893), Expect = 8e-94, Method: Composition-based stats. Identities = 105/310 (33%), Positives = 168/310 (54%), Gaps = 16/310 (5%) Query: 20 HVPVLLEKVIAL-LNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H+ VLL + + L V +DATFG GG+++ + V A D+DP A+ Sbjct: 3 HISVLLHETVDGVLAGRDTGVYVDATFGRGGHTKLLLSKLDPNARVYAFDKDPQALEVAA 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + +F + A+F+ +Q + G VDG++ DLGVSS Q+D +RGFSF + GP Sbjct: 63 Q-LEQEDSRFKIIHASFADIQAELAKIGIIEVDGIMADLGVSSPQLDQAERGFSFMQDGP 121 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G++A++ + + + L I+ GEE+ + RIA AI TT L Sbjct: 122 LDMRMDNSQGLTAAEWLLEIEEEKLANIIYQYGEERYSRRIAKAIKLA---GEITTTAQL 178 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +++ + ++ HPATR+FQA+RI +N E++++ L A + LK G L V+SFH Sbjct: 179 AEIVKVAHPKWEKHK-HPATRTFQAIRIAINKELDDIEIFLPQAVELLKPTGQLAVISFH 237 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDRL+K+F S +P + + +++ + ++ +V N RSRSA Sbjct: 238 SLEDRLIKQFIQKESTLAEDHGWGMPQAQIDTRRLKKVSR--IRASEAEVKANPRSRSAW 295 Query: 311 LRAGMRTVER 320 LR R ++ Sbjct: 296 LRVAERLEKK 305 >gi|158334035|ref|YP_001515207.1| S-adenosyl-methyltransferase MraW [Acaryochloris marina MBIC11017] gi|263433314|sp|B0BYK8|RSMH_ACAM1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|158304276|gb|ABW25893.1| S-adenosyl-methyltransferase MraW, putative [Acaryochloris marina MBIC11017] Length = 298 Score = 348 bits (893), Expect = 8e-94, Method: Composition-based stats. Identities = 116/304 (38%), Positives = 168/304 (55%), Gaps = 27/304 (8%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76 +H+ VL +++A L + LDAT G GG+S VIALD+D A+ + Sbjct: 9 NHISVLSHELMAGLMLQEQGLYLDATVGGGGHSALILSQYPQTQVIALDQDIQALEAARA 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + D ++ +Q FS + DG++ DLGVSS Q+D +RGFSF+ LDMR Sbjct: 69 KLHDACDRIQFWQGNFSTYHP--GELRFDGIIADLGVSSAQLDRPERGFSFRYDADLDMR 126 Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M S G++A+DV+N + +DL I GEE+ + RIA IV +R P +TT DL+ ++ Sbjct: 127 MDQSQGLTAADVINTYSERDLADIFYHYGEERFSRRIARKIVSKR---PLRTTSDLARVV 183 Query: 196 QKTVYFS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 ++ + + RIHPATR FQALRI VN E++ L + + A LK GG + ++SFHSL Sbjct: 184 ASSLPAAKGRRRRIHPATRVFQALRIAVNQELQVLEKFIEIAPTWLKPGGRIGIISFHSL 243 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 EDR+VK F S + Q +TKK +V ++++ N RSRSAKLR Sbjct: 244 EDRIVKIHFRQNS-----------------LLQVVTKKPIVASEQEKRENSRSRSAKLRF 286 Query: 314 GMRT 317 R Sbjct: 287 AERV 290 >gi|325198906|gb|ADY94362.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis G2136] Length = 316 Score = 348 bits (893), Expect = 9e-94, Method: Composition-based stats. Identities = 111/303 (36%), Positives = 167/303 (55%), Gaps = 10/303 (3%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRD 80 +L + + L V +D TFG GG+SR +I D+DP A++ +E + Sbjct: 1 MLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFDKDPQAIAVAEE-LAR 59 Query: 81 YKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 ++ + F+ Q + G VDG +FDLG+SS QID G RGFSF+ PLDMRM Sbjct: 60 SDKRVGVVHGGFASFQAALDGLGIGKVDGALFDLGISSPQIDDGSRGFSFRFDAPLDMRM 119 Query: 138 SCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 + G+SA++ + A+ +DL ++ GEE+ + +IA AIV +R +P TT+ L+ ++ Sbjct: 120 DTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRAESPIDTTRKLAQIVA 179 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 + V + + PATR+FQA+RIF+N E+EE+ L LK GG L V++FHSLEDR Sbjct: 180 QNVRTRERGQ-DPATRTFQAVRIFINRELEEVGAVLPQVMCRLKEGGRLAVIAFHSLEDR 238 Query: 257 LVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 +VK+F S R A P + I + + P + ++A N R+RSA LR Sbjct: 239 IVKQFVKKYSQHAPLPRWAAVREADLPELPLKIVGRALKPGEAEIAANPRARSAVLRVAE 298 Query: 316 RTV 318 RT Sbjct: 299 RTA 301 >gi|76798783|ref|ZP_00780998.1| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae 18RS21] gi|77405004|ref|ZP_00782105.1| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae H36B] gi|77410569|ref|ZP_00786929.1| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae CJB111] gi|22533299|gb|AAM99192.1|AE014204_10 conserved hypothetical protein TIGR00006 [Streptococcus agalactiae 2603V/R] gi|76585867|gb|EAO62410.1| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae 18RS21] gi|77163284|gb|EAO74235.1| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae CJB111] gi|77176443|gb|EAO79211.1| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae H36B] Length = 298 Score = 348 bits (893), Expect = 9e-94, Method: Composition-based stats. Identities = 95/298 (31%), Positives = 155/298 (52%), Gaps = 10/298 (3%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDYKE--QF 85 +L+ P + +DAT G G+S ++ A D+D A+ ++ Y + Q Sbjct: 1 MLDIKPDGIYVDATLGGAGHSEYLLSQLGPDGHLYAFDQDQKAIDNAHIRLKKYVDTGQV 60 Query: 86 SLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-G 141 + + F L + GV +G+ +DLGVSS Q+D +RGFS+++ PLDMRM+ Sbjct: 61 TFIKDNFRNLSSNLKALGVSEINGICYDLGVSSPQLDERERGFSYKQDAPLDMRMNREQS 120 Query: 142 ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYF 201 ++A DVVN + DL RI GE+K + +IA I + R TT +L+ +I+ + Sbjct: 121 LTAYDVVNTYSYHDLVRIFFKYGEDKFSKQIARKIEQVRAEKTISTTTELAEIIKSSKSA 180 Query: 202 SK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKK 260 + + HPA + FQA+RI VN+E+ + ++ A L G + V++FHSLEDRL K+ Sbjct: 181 KELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDLLAVDGRISVITFHSLEDRLTKQ 240 Query: 261 FFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318 F S + + + + +K ++P+QE++ N R+ SAKLR R Sbjct: 241 LFKEASTVEVPKGLPFIPDDLQPKMELVNRKPILPSQEELEANNRAHSAKLRVARRIR 298 >gi|149927124|ref|ZP_01915381.1| S-adenosyl-methyltransferase [Limnobacter sp. MED105] gi|149824063|gb|EDM83284.1| S-adenosyl-methyltransferase [Limnobacter sp. MED105] Length = 323 Score = 347 bits (892), Expect = 9e-94, Method: Composition-based stats. Identities = 122/314 (38%), Positives = 180/314 (57%), Gaps = 16/314 (5%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 + +H+PVLL+ + L P + LD TFG GG+SR+ + ++ALDRDP AV Sbjct: 2 STDEHIPVLLQPTVDALLHTPDGLYLDCTFGRGGHSRALLEKLSAQGQLVALDRDPQAVQ 61 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK 129 E +F ++ F+ L+ + G VDGV+ D+GVSS QID +RGFSF++ Sbjct: 62 AMGEI---KDSRFRGVRSAFADLESALDSLGIDQVDGVLMDIGVSSPQIDQAERGFSFRR 118 Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM +G SA+D + +A+ +++ ++ GEE+ A +IA AIV RR P TT Sbjct: 119 DGPLDMRMDPQTGESAADFLARADAREIKEVIKNYGEERFAVQIATAIVARRTERPITTT 178 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 DL+ ++ V + + PATR+FQALRI VN E+ +L QGL +A K L+ GG L V+ Sbjct: 179 LDLAQIVAGAVRTREPGQ-DPATRTFQALRIHVNQELAQLEQGLTAAFKRLRVGGRLAVI 237 Query: 249 SFHSLEDRLVKKFFASRSGKVM---AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 SFHSLEDR+ K+F + A +P + + + + + PT+E+ N R Sbjct: 238 SFHSLEDRITKQFIEKLANPKSQQDARLRKLPLPEPTPLMKKLDR--IKPTKEECELNPR 295 Query: 306 SRSAKLRAGMRTVE 319 SRS+ LR + E Sbjct: 296 SRSSVLRVAEKLAE 309 >gi|170738613|ref|YP_001767268.1| S-adenosyl-methyltransferase MraW [Methylobacterium sp. 4-46] gi|263456469|sp|B0UFI0|RSMH_METS4 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|168192887|gb|ACA14834.1| S-adenosyl-methyltransferase MraW [Methylobacterium sp. 4-46] Length = 337 Score = 347 bits (892), Expect = 1e-93, Method: Composition-based stats. Identities = 143/308 (46%), Positives = 196/308 (63%), Gaps = 8/308 (2%) Query: 18 GDHVPVLLEKVIALLNPAPG-KVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCG 74 H+PVLL +V +L G V++D TFGAGGYSR+ ++ IA+DRDP AV+ G Sbjct: 4 APHIPVLLAEVRGVLRLGEGPGVVVDGTFGAGGYSRALLAADPDLRVIAIDRDPTAVAAG 63 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 QE + L Q F L V +GV DGVV D+GVSSMQ+D +RGFSF+ G Sbjct: 64 QELAAAAGGRLRLVQGRFGDLDAIVRREGVEAVDGVVLDIGVSSMQLDRAERGFSFRADG 123 Query: 132 PLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 PLDMRM +G SA+D+VN A +L I+ GEE+++ +A AI++ R+ AP TT L Sbjct: 124 PLDMRMEGAGTSAADLVNGAPEAELADIIYHFGEERRSRAVARAILEARRRAPIATTGAL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ V + IHPATR+FQALRI VN+E+ EL + L +AE+ L+ GG L VV+FH Sbjct: 184 AEIVAGVVRAEPGSGIHPATRTFQALRIAVNDELGELNRALHAAERILRPGGRLAVVTFH 243 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK+FF++RSG+ ++ +P P F +TK V P++ + A N R+RSA Sbjct: 244 SLEDRIVKQFFSARSGRAVSASRHLPMAERPVPRSFTLVTKGPVGPSEAEAAANPRARSA 303 Query: 310 KLRAGMRT 317 KLRAG RT Sbjct: 304 KLRAGERT 311 >gi|254479883|ref|ZP_05093131.1| S-adenosyl-methyltransferase MraW [marine gamma proteobacterium HTCC2148] gi|214039445|gb|EEB80104.1| S-adenosyl-methyltransferase MraW [marine gamma proteobacterium HTCC2148] Length = 308 Score = 347 bits (892), Expect = 1e-93, Method: Composition-based stats. Identities = 110/309 (35%), Positives = 165/309 (53%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 H VLL + + L AP +D TFG GG+SR +++ +D+DP A C Sbjct: 2 ANMHQTVLLREAVEALVTAPSGAYVDGTFGRGGHSRFLLDQLDDNGHLLGVDKDPVACEC 61 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKS 130 + + +FS + +F+ L + +D G++ DLGVSS Q+D RGFSF Sbjct: 62 AAQ-LSSADSRFSFYHGSFADLPQQLQLMDIDAFDGILLDLGVSSPQLDEAGRGFSFMSD 120 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 GPLDMRM S G +A+ ++ A+ + +L GEE+ A RIA AIVK R+ P TT Sbjct: 121 GPLDMRMDTSSGETAAQWLSYADTTAIAEVLKEYGEERFAKRIAAAIVKAREVEPLTTTA 180 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ ++ + + ++ HPATR+FQA+RI VN E+E+L L S+ LK GG L+V+S Sbjct: 181 QLAKVVSEANPRWERHK-HPATRAFQAIRIKVNRELEDLGDLLASSLDMLKVGGRLVVIS 239 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDR+VK++ + + ++A + K + +V N RSRSA Sbjct: 240 FHSLEDRMVKRYMRDMARGEQLPAGVPVTDAALNRRMKLVGKATKASDAEVDENVRSRSA 299 Query: 310 KLRAGMRTV 318 +R + Sbjct: 300 VMRVAEKIA 308 >gi|187735156|ref|YP_001877268.1| S-adenosyl-methyltransferase MraW [Akkermansia muciniphila ATCC BAA-835] gi|187425208|gb|ACD04487.1| S-adenosyl-methyltransferase MraW [Akkermansia muciniphila ATCC BAA-835] Length = 520 Score = 347 bits (891), Expect = 1e-93, Method: Composition-based stats. Identities = 115/304 (37%), Positives = 175/304 (57%), Gaps = 7/304 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+ VLL + + +L PGK I+D T G GG++ + G+ V +DRD A + Sbjct: 219 HITVLLHETVDMLKAGPGKFIVDCTLGGGGHTELLLEQGATVWGIDRDADARRAAMLRLA 278 Query: 80 DYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + +F + F ++ + +G VDG++ DLGVSS Q+D RGFSF++ GPLDMR Sbjct: 279 RFGSRFKVLAGNFQDVESILSQQGVSRVDGLLADLGVSSHQLDTASRGFSFREDGPLDMR 338 Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M + +SA ++VN+A +++ IL GEE+ + IA A+VK R AP TT L+ ++ Sbjct: 339 MDTRAALSARNLVNEAPEEEIANILWQFGEERASRAIARAMVKARAQAPITTTAQLARIV 398 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + + + R HP TR+FQALRI VN E++ L L S+ + L GG + V++FHSLED Sbjct: 399 ESVLP--RKGRQHPGTRTFQALRIAVNGELDALDALLDSSVRLLGQGGRMAVITFHSLED 456 Query: 256 RLVKKFFASRSGKVM-AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 R VK+FF RS + P F+ +++K V +E+++ N RSRSAKLR Sbjct: 457 RRVKQFFDLRSRPEIDRPEWPAPRPNPDYCFRPLSRKPVTAGEEELSTNPRSRSAKLRGV 516 Query: 315 MRTV 318 + + Sbjct: 517 EKII 520 >gi|148284404|ref|YP_001248494.1| S-adenosyl-methyltransferase MraW [Orientia tsutsugamushi str. Boryong] gi|262824724|sp|A5CD85|RSMH_ORITB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|146739843|emb|CAM79768.1| S-adenosyl-methyltransferase [Orientia tsutsugamushi str. Boryong] Length = 312 Score = 347 bits (891), Expect = 1e-93, Method: Composition-based stats. Identities = 121/308 (39%), Positives = 181/308 (58%), Gaps = 8/308 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETM 78 H PV+ ++++ L P + LD TFG GGYS+ +IA DRDP +S + Sbjct: 5 HTPVMATEMLSYLAPVDNETYLDCTFGTGGYSKLILSNCNCKIIAFDRDPAVISIASQFY 64 Query: 79 RDYKEQFSLFQATFSQLQDYV-PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 + Y +F+ F F + Y+ ++G+V DLGVSSMQ+D +RGFSF+ LDMRM Sbjct: 65 QQYSNRFTFFNDNFVEANKYLSKSAKLNGIVMDLGVSSMQLDAANRGFSFRYDAELDMRM 124 Query: 138 SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK 197 S G AS++VN+A+ L I+ GEE +A++IA IV R+ P TT L+++I++ Sbjct: 125 SQKGYKASELVNEASEHQLADIIYKFGEENKANKIAKHIVLAREKKPITTTLQLANIIRE 184 Query: 198 TVYFS---KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 V ++ K N+I AT++FQA+RIF+N+E+ + L + + L G LIVVSFH+LE Sbjct: 185 AVGYNNYYKKNKIDSATKTFQAIRIFINDELSAIQNFLNQSLELLAVNGRLIVVSFHALE 244 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHP---AVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 D +VKKF + K +A + P V +TKK+ VPT+ ++ N RSRSA+L Sbjct: 245 DAIVKKFMHQNAVKKVAQSKYSTNKQLPLQNGVLHLLTKKIAVPTRTEIINNPRSRSARL 304 Query: 312 RAGMRTVE 319 RA ++ E Sbjct: 305 RAALKINE 312 >gi|302036124|ref|YP_003796446.1| s-adenosyl-L-methionine-dependent methyltransferase mraW [Candidatus Nitrospira defluvii] gi|300604188|emb|CBK40520.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Candidatus Nitrospira defluvii] Length = 309 Score = 347 bits (891), Expect = 1e-93, Method: Composition-based stats. Identities = 118/314 (37%), Positives = 171/314 (54%), Gaps = 20/314 (6%) Query: 12 AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDP 68 I H PVL+E+++ L PG V +D T G G + + ++ +DRD Sbjct: 2 EIDSARDSHEPVLVEEILFWLQCKPGGVYVDCTLGYAGLAARLLDRTAPDGILVGIDRDA 61 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGF 125 A++ + +R+ + F L+ + GV DGV+FDLGVSS Q+D +RGF Sbjct: 62 AALAESRMRLREVAHRVHFRHGNFCDLKALIIGSGVSRVDGVIFDLGVSSPQLDRAERGF 121 Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF++ GPLDMRM G +A+D+V +L ++ LGEE+ + RIA AIV+ R Sbjct: 122 SFREDGPLDMRMDQREGRTAADLVRDLPETELADLIYQLGEERYSRRIARAIVQARMQGV 181 Query: 185 FQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 TT L++++++ V S ++ RIH ATR+FQALRI VN E++ L LR A L GG Sbjct: 182 IATTWQLAAVVERAVPASYRHGRIHCATRTFQALRIAVNRELDVLEPALRDAVDILAPGG 241 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 + VSFHSLEDR+VK F + + N A + +TKK V+ ++ + N Sbjct: 242 RVCAVSFHSLEDRIVKHTFRALA------------NGPEASVRVLTKKPVIASENERNRN 289 Query: 304 RRSRSAKLRAGMRT 317 RSRSAKLR R Sbjct: 290 PRSRSAKLRVVERI 303 >gi|103487373|ref|YP_616934.1| methyltransferase [Sphingopyxis alaskensis RB2256] gi|123078262|sp|Q1GRX1|RSMH_SPHAL RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|98977450|gb|ABF53601.1| methyltransferase [Sphingopyxis alaskensis RB2256] Length = 325 Score = 347 bits (891), Expect = 1e-93, Method: Composition-based stats. Identities = 137/313 (43%), Positives = 198/313 (63%), Gaps = 10/313 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H PVLL++VIA L APG+ +DATFGAGGY+R+ G+ VIA DRDP A++ G+ + Sbjct: 10 HDPVLLDEVIAALAIAPGERHVDATFGAGGYTRAMLAAGAEVIACDRDPDAIAGGEALVA 69 Query: 80 DYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + + +L F ++ + ++G VDG+ FD+GVSSMQ+D G+RGFSFQK GPLDMR Sbjct: 70 EADGRLTLIHGRFGEIDRLLAERGIDAVDGITFDIGVSSMQLDQGERGFSFQKDGPLDMR 129 Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 M+ G SA+D +N+A+ ++ +L G+E+Q+ R+A AIV R P T +L+S+++ Sbjct: 130 MAQEGESAADWLNRADEYEIADVLYHYGDERQSRRVARAIVAAR---PLTRTSELASVVR 186 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 K + PAT+SFQA+RI +N E++EL GL +AE+ L+ GG L VVSFHS EDR Sbjct: 187 KALRHPPGAPKDPATKSFQAIRIHINRELDELVAGLAAAERVLRPGGRLAVVSFHSTEDR 246 Query: 257 LVKKFFASRSGKVMAVRH---MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 +VK F RSG A + A A F++ +K V P + + A N R+RSA LR+ Sbjct: 247 IVKHFLRERSGGDAAGSRHRPAPTAAARAATFETPARK-VRPGKAEEARNPRARSATLRS 305 Query: 314 GMRTVERSIEDDS 326 +RT + +S Sbjct: 306 AVRTAAPAWPGNS 318 >gi|189184784|ref|YP_001938569.1| S-adenosyl-methyltransferase MraW [Orientia tsutsugamushi str. Ikeda] gi|262824728|sp|B3CVD8|RSMH_ORITI RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|189181555|dbj|BAG41335.1| S-adenosyl-methyltransferase MraW [Orientia tsutsugamushi str. Ikeda] Length = 312 Score = 347 bits (891), Expect = 1e-93, Method: Composition-based stats. Identities = 123/308 (39%), Positives = 181/308 (58%), Gaps = 8/308 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETM 78 H PVL ++++ L P + LD TFGAGGYS+ VIA DRDP +S + Sbjct: 5 HTPVLATEMLSYLAPVDNETYLDCTFGAGGYSKLILSNCNCKVIAFDRDPAVISIASQFY 64 Query: 79 RDYKEQFSLFQATFSQLQDYVPD-KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 + Y +F+ F F + Y+ ++G+V DLGVSSMQ+D +RGFSF+ LDMRM Sbjct: 65 QQYPNRFTFFNENFVEANKYLSKLDKLNGIVMDLGVSSMQLDEANRGFSFRYDAELDMRM 124 Query: 138 SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK 197 S G AS+ VN+A+ L I+ GEE +A++IA IV R+ P TT L+++I++ Sbjct: 125 SQKGYKASEFVNEASEHQLADIIYKFGEENKANKIAKHIVLARKKKPITTTLQLANIIRE 184 Query: 198 TVYFS---KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 V ++ K N+I AT++FQA+RIF+N+E+ + L + + L G LIVVSFH+LE Sbjct: 185 AVGYNNYYKKNKIDSATKTFQAIRIFINDELSAIQNFLNQSLELLAVNGRLIVVSFHALE 244 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHP---AVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 D ++KKF + K +A + P V +TKK+ VPT+ ++ N RSRSA+L Sbjct: 245 DAIIKKFMHQNAVKKVAQSKYSTNRQSPLQNGVLYLLTKKIAVPTRTEIINNPRSRSARL 304 Query: 312 RAGMRTVE 319 RA ++ E Sbjct: 305 RAALKINE 312 >gi|182439206|ref|YP_001826925.1| putative S-adenosylmethionine-dependent methyltransferase [Streptomyces griseus subsp. griseus NBRC 13350] gi|262826728|sp|B1W0I2|RSMH_STRGG RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|178467722|dbj|BAG22242.1| putative S-adenosylmethionine-dependent methyltransferase [Streptomyces griseus subsp. griseus NBRC 13350] Length = 321 Score = 347 bits (891), Expect = 1e-93, Method: Composition-based stats. Identities = 121/316 (38%), Positives = 180/316 (56%), Gaps = 13/316 (4%) Query: 20 HVPVLLEKVIALLNPA------PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAV 71 HVPV+L++ + LL PA P V++D T G GG+S + +IALDRD A+ Sbjct: 6 HVPVMLQRCLDLLAPALQDPAHPEPVVVDCTLGLGGHSEALLASFPTARLIALDRDKEAL 65 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQ 128 E + Y ++ +L A + +L + + G V GV+FDLGVSSMQ+D DRGF++ Sbjct: 66 RLSGERLAPYGDRATLVHAVYDELPEVLARLGIPKVQGVLFDLGVSSMQLDEADRGFAYA 125 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + PLDMRM S G+ A++V+N +L RIL GEEKQA RI A+V+ R+ PF Sbjct: 126 QDAPLDMRMDQSTGMGAAEVLNTYPPGELVRILRAYGEEKQAKRIVSAVVREREKEPFSN 185 Query: 188 TQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 + L LI+ + +K +PA R+FQALRI VN E+ L + + +A +L GG + Sbjct: 186 SARLVELIRDALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVDSLDVGGRIA 245 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+S+HSLEDRLVK+ FA+ + + + + +T+ +PT+++VA NRR+ Sbjct: 246 VLSYHSLEDRLVKQVFAAGAANTAPPGLPVVPERYQPRLKQLTRGAELPTEQEVAENRRA 305 Query: 307 RSAKLRAGMRTVERSI 322 A+LR R Sbjct: 306 APARLRGAQRIRAEER 321 >gi|313206538|ref|YP_004045715.1| s-adenosyl-methyltransferase mraw [Riemerella anatipestifer DSM 15868] gi|312445854|gb|ADQ82209.1| S-adenosyl-methyltransferase MraW [Riemerella anatipestifer DSM 15868] gi|315023521|gb|EFT36525.1| S-adenosyl-methyltransferase mraW [Riemerella anatipestifer RA-YM] gi|325336013|gb|ADZ12287.1| Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Riemerella anatipestifer RA-GD] Length = 297 Score = 347 bits (891), Expect = 1e-93, Method: Composition-based stats. Identities = 109/305 (35%), Positives = 163/305 (53%), Gaps = 17/305 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQE 76 H VLL++ + L V +D TFG GG+SR D+D A+ Sbjct: 3 HQSVLLKESVDALVLNADGVYVDCTFGGGGHSREIVSRLSSAGRHFGFDQDLDALEN--- 59 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + E+F++ F L++ + GV DG++ DLGVSS Q D +RGFS + PL Sbjct: 60 --KLDDERFTIINQNFRFLENSLMLYGVTQVDGILADLGVSSHQFDAAERGFSTRSDAPL 117 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ G++A VVN+ + L I GE ++A R+A +V R+S P +TT+DL Sbjct: 118 DMRMNVMQGLNAQKVVNEYEEEHLADIFYHYGELREARRLARELVHYRKSKPIKTTEDLK 177 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 S+ + +N + FQA+RI VN E+E L + L A + LK GG L+V+S+HS Sbjct: 178 SVFKYIPPHKQN---KFFAQLFQAIRIEVNQELEALKEMLEQAYRILKPGGRLVVISYHS 234 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDRLVK+F + R + + F+ + K VPT+E++ N R+RSAK+R Sbjct: 235 LEDRLVKRFLKNGMFDGEPERDI--YGNYTKAFELLQSKAFVPTEEEIEANSRARSAKMR 292 Query: 313 AGMRT 317 G++ Sbjct: 293 VGIKV 297 >gi|304321488|ref|YP_003855131.1| hypothetical protein PB2503_09684 [Parvularcula bermudensis HTCC2503] gi|303300390|gb|ADM09989.1| hypothetical protein PB2503_09684 [Parvularcula bermudensis HTCC2503] Length = 331 Score = 347 bits (891), Expect = 1e-93, Method: Composition-based stats. Identities = 139/319 (43%), Positives = 202/319 (63%), Gaps = 10/319 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H PVLL+ VI L+P PG++++D TFGAGGY+R + G+ +IA DRDP A++ G+ R Sbjct: 5 HQPVLLDAVIDRLSPQPGEILVDGTFGAGGYTRRLLEAGATIIAFDRDPTAIAAGRSLER 64 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 + + +L +A FS L ++V ++GVVFD GVSSMQ+D +RGFSF+ GPLDMRM Sbjct: 65 ECGDALTLVEAPFSALAEHVA-PPINGVVFDFGVSSMQLDRPERGFSFRAEGPLDMRMG- 122 Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199 +G A+D VNQA L + GEE+++ +A IV +R++ PF+TT L+++ + + Sbjct: 123 AGRPAADFVNQAEEAALADVFYHYGEERRSRALARRIVAQRETTPFETTAQLAAVAEAVL 182 Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259 ++IHPATR FQALRI VN+E+ E+ + L +AEK L GG L+ VSFHSLEDR+VK Sbjct: 183 GT--RDKIHPATRMFQALRILVNDELGEIVRALIAAEKVLAEGGRLVAVSFHSLEDRIVK 240 Query: 260 KFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318 +FF G+ A RH P + F + K + + ++A N R+RSA+LRAG+RT Sbjct: 241 RFFQVTEGRAQTASRHEPPVDKILPRFAPL-GKALSADEAEIAGNPRARSARLRAGVRTA 299 Query: 319 ERSIE----DDSFVHLPRL 333 + + + LP L Sbjct: 300 APPTDWTEAALAQLGLPAL 318 >gi|332160404|ref|YP_004296981.1| S-adenosyl-methyltransferase MraW [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325664634|gb|ADZ41278.1| S-adenosyl-methyltransferase MraW [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 303 Score = 347 bits (891), Expect = 1e-93, Method: Composition-based stats. Identities = 117/309 (37%), Positives = 174/309 (56%), Gaps = 19/309 (6%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRD 80 +L++ + LN + +D TFG GG+SR +IA+DRDP A+ + Sbjct: 1 MLDEAVNGLNIRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDRDPQAIEAAKSI--- 57 Query: 81 YKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 +FS+ FS L YV + ++GV+ DLGVSS Q+D +RGFSF + GPLDMR Sbjct: 58 TDPRFSIVHGPFSDLAHYVRELDLVGRINGVLLDLGVSSPQLDDPERGFSFMRDGPLDMR 117 Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M + GISA++ + +A+ D+ +L GEE+ A R+A AIV+R + P T++L+ LI Sbjct: 118 MDPTRGISAAEWLMKASADDIAWVLKTFGEERFAKRLAKAIVERNLTQPMTRTKELADLI 177 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 F + ++ HPATRSFQA+RI++N+E+EE+ + L A + L G L V+SFHSLED Sbjct: 178 ANASPFREKHK-HPATRSFQAIRIYINSELEEIERTLDGALEVLAPEGRLSVISFHSLED 236 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 R+VK F S + + A +S+ K ++P +VA N R+RS+ Sbjct: 237 RIVKNFIRHHSRGPQVPAGLPLTEAQLRSMGGRTLKSVGK--MMPPDAEVAENPRARSSV 294 Query: 311 LRAGMRTVE 319 LR R E Sbjct: 295 LRFAERIKE 303 >gi|307330443|ref|ZP_07609586.1| S-adenosyl-methyltransferase MraW [Streptomyces violaceusniger Tu 4113] gi|306883868|gb|EFN14911.1| S-adenosyl-methyltransferase MraW [Streptomyces violaceusniger Tu 4113] Length = 310 Score = 347 bits (891), Expect = 2e-93, Method: Composition-based stats. Identities = 113/307 (36%), Positives = 176/307 (57%), Gaps = 10/307 (3%) Query: 24 LLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETM 78 +L++ + +L P PG V++D T G GG+S + + +IALDRDP A+ E + Sbjct: 1 MLQRCLDMLAPALAQPGAVVVDCTLGLGGHSEALLRDFPEARLIALDRDPSALRLAGERL 60 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 Y ++ +L A + +L + + GV G++FDLGVSSMQ+D +RGF++ + PLDM Sbjct: 61 APYGDRATLVHAVYDELPEVLDRLGVPRVQGILFDLGVSSMQLDEAERGFAYAQDAPLDM 120 Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM + G+SA++V+N +L RIL GEEK A +I A+V+ R PF + L L Sbjct: 121 RMDQTTGVSAAEVLNTYPPGELVRILRAYGEEKFAKKIVDAVVRERAKEPFTNSARLVEL 180 Query: 195 IQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 I+ + +K +PA R+FQALRI VN E+ L + + +A L GG + V+S+HSL Sbjct: 181 IRAALPQAAKRTGGNPAKRTFQALRIEVNGELAVLERAIPAAVGTLAVGGRIAVLSYHSL 240 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 EDRLVK+ FA+ + + + + +T+ +PT+E++A NRR+ A+ R Sbjct: 241 EDRLVKQVFAAGARNTAPPGLPVIPEQYQPRLKLLTRGAELPTEEEIAENRRAAPARFRG 300 Query: 314 GMRTVER 320 R E Sbjct: 301 AERIREE 307 >gi|116750882|ref|YP_847569.1| S-adenosyl-methyltransferase MraW [Syntrophobacter fumaroxidans MPOB] gi|171460803|sp|A0LNY2|RSMH_SYNFM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|116699946|gb|ABK19134.1| S-adenosyl-methyltransferase MraW [Syntrophobacter fumaroxidans MPOB] Length = 319 Score = 347 bits (890), Expect = 2e-93, Method: Composition-based stats. Identities = 126/307 (41%), Positives = 180/307 (58%), Gaps = 9/307 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 +H+PV+LE+ + LL G V +D T G GGYS + + + ++ +D D A+ Sbjct: 8 EHIPVMLEQALELLACRRGGVYVDGTVGGGGYSEAILRASAPDGILLGVDWDAEAIGRAA 67 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + Y + L +A F++L + +P G VDG+V DLGVS+ QID RGFSF K GP Sbjct: 68 GRLSAYGRRAILTKAGFAELPEVLPRHGFAQVDGIVLDLGVSAFQIDDAARGFSFTKDGP 127 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM +A+D+VN KDL ++ LGEE+ + RIA A+V+RR+ PFQ T +L Sbjct: 128 LDMRMDPGLPQTAADMVNTLPEKDLADLIFRLGEERWSRRIARAVVERRRERPFQRTLEL 187 Query: 192 SSLIQKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 + + TV +++ RIHPATR+F ALR+ VN E+E L + L A LK GG L VVSF Sbjct: 188 ADTVAATVPATRDSRRIHPATRTFLALRLAVNQELESLERFLSGALDLLKTGGRLCVVSF 247 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK F + R ++ + + +T+K V P + + N RSRSA Sbjct: 248 HSLEDRMVKGQFKEWAKSCRCPREAVLCRCEGRPLVRLLTRKAVRPDEREKERNPRSRSA 307 Query: 310 KLRAGMR 316 +LRA + Sbjct: 308 RLRAVEK 314 >gi|110833451|ref|YP_692310.1| methyltransferase [Alcanivorax borkumensis SK2] gi|123345754|sp|Q0VS10|RSMH_ALCBS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|110646562|emb|CAL16038.1| methyltransferase [Alcanivorax borkumensis SK2] Length = 312 Score = 347 bits (890), Expect = 2e-93, Method: Composition-based stats. Identities = 114/313 (36%), Positives = 168/313 (53%), Gaps = 8/313 (2%) Query: 12 AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDP 68 T H PV+LE+V+ + +D TFG GG+SR+ +I +DRDP Sbjct: 2 TTEDTQYAHQPVMLEEVLDMWFSQSEGFYVDGTFGRGGHSRALLSRLGENGRLIGIDRDP 61 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFS 126 A++ GQ+ + +F + F L V G +DG++ DLGVSS Q+D RGFS Sbjct: 62 QAIAAGQQ-LAASDSRFHMMAGRFDCLPQAVEQAGRPIDGLLLDLGVSSPQLDDAARGFS 120 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 F + GPLDMRM + G S ++ ++ A KD+ +L GEE+++ IA I + R+ P Sbjct: 121 FLRDGPLDMRMDPTQGESVAEWLSYAAEKDIANVLYRYGEERKSRWIAKRICETRKEQPI 180 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 T L+ LI+ + ++ + HPATRSFQALRI +N E++ L Q L + + L GG L Sbjct: 181 TRTLQLADLIESVLGRNEQGK-HPATRSFQALRIHINGELDALDQVLEQSLETLAIGGRL 239 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 ++SFHSLEDR+VK F SG+ R +P KV+ ++ ++ N R Sbjct: 240 AIISFHSLEDRIVKLFIRDHSGRAPKGRGGLPLGDELPQRLEPVGKVMRASKAELKVNVR 299 Query: 306 SRSAKLRAGMRTV 318 SRSA LR + Sbjct: 300 SRSAVLRIAEKVA 312 >gi|255326220|ref|ZP_05367306.1| S-adenosyl-methyltransferase MraW [Rothia mucilaginosa ATCC 25296] gi|255296674|gb|EET76005.1| S-adenosyl-methyltransferase MraW [Rothia mucilaginosa ATCC 25296] Length = 354 Score = 347 bits (890), Expect = 2e-93, Method: Composition-based stats. Identities = 115/317 (36%), Positives = 176/317 (55%), Gaps = 15/317 (4%) Query: 20 HVPVLLEKVIALLNP--------APGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPF 69 HVPV+L++ I LL P ++D T G GG+S + + N+ I +DRD Sbjct: 37 HVPVMLDRCINLLAPGIERAVEERGTAYVIDGTLGMGGHSEALLERFENLVLIGIDRDLQ 96 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFS 126 A + E + + ++F A + ++ + +G+DG++ DLGVSSMQ+D RGF+ Sbjct: 97 AHAIAGERLARFGDRFVPVHAVYDEIDRAMETAGVQGIDGILMDLGVSSMQLDERTRGFA 156 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 + PLDMRM+ ++A VVN+ + L RI+ GEEK ASRIA AI R +AP Sbjct: 157 YSYDAPLDMRMNSEDELTARIVVNEYSEDQLRRIIRNWGEEKFASRIARAICTARANAPL 216 Query: 186 QTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 +TT +L +IQK V ++ HPA R+FQALRI VN+E+E L + + +A +AL GG Sbjct: 217 ETTGELVRIIQKAVPVAAQRTGGHPAKRTFQALRIEVNHELEALERAVPAALEALNLGGR 276 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 + +S+HSLED++VK+ + + + H + IT+ PT E++ N Sbjct: 277 FVAMSYHSLEDKIVKRALTAEATSKAPKGFPVELEEHKPTVKIITRGAEPPTDEEIEQNS 336 Query: 305 RSRSAKLRAGMRTVERS 321 R+ SAKLRA + + Sbjct: 337 RAASAKLRAAEKIRIPA 353 >gi|90423689|ref|YP_532059.1| methyltransferase [Rhodopseudomonas palustris BisB18] gi|123275305|sp|Q216E6|RSMH_RHOPB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|90105703|gb|ABD87740.1| methyltransferase [Rhodopseudomonas palustris BisB18] Length = 330 Score = 347 bits (890), Expect = 2e-93, Method: Composition-based stats. Identities = 144/326 (44%), Positives = 198/326 (60%), Gaps = 8/326 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQETM 78 H+PVL ++ + LL P G V +DATFGAGGYS + VI +DRD A++ G + + Sbjct: 7 HIPVLGQEAVGLLAPRDGGVYVDATFGAGGYSGLILAAADTRVIGIDRDRTAIAGGFDLV 66 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + +L + FS L + +G DGVV D+GVSSMQ+D +RGFSF+ +GPLDM Sbjct: 67 ERSGGRLTLVEDRFSNLAEVCAAQGAGLVDGVVMDVGVSSMQLDQSERGFSFRLAGPLDM 126 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RM SG SA+DV+ A+ +L I+ I GEE+ + +A AIV R P TT+ L+ ++ Sbjct: 127 RMGQSGPSAADVIAVASEAELANIIYIFGEERHSRAVARAIVAARAIEPITTTRALADIV 186 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 K V+ +K IHPATR+FQ LRIFVN E++EL L +AE+ LK GG L+VVSFHSLED Sbjct: 187 GKVVH-AKPGEIHPATRTFQGLRIFVNGELDELHLALSAAERVLKPGGRLVVVSFHSLED 245 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 R+VK FF +R RH+ + F +TK+ + +++A N R+RSAKLRAG Sbjct: 246 RIVKNFFNARGKTGGGSRHLPELDQEAPSFAILTKRPITAGPDELAGNPRARSAKLRAGE 305 Query: 316 RTVERSIEDDSFVHLPRLPTLSQFRG 341 RT + + LP PTL G Sbjct: 306 RTAALAHPGED---LPAWPTLDAVMG 328 >gi|256379773|ref|YP_003103433.1| S-adenosyl-methyltransferase MraW [Actinosynnema mirum DSM 43827] gi|255924076|gb|ACU39587.1| S-adenosyl-methyltransferase MraW [Actinosynnema mirum DSM 43827] Length = 316 Score = 347 bits (890), Expect = 2e-93, Method: Composition-based stats. Identities = 114/314 (36%), Positives = 172/314 (54%), Gaps = 8/314 (2%) Query: 16 TIGDHVPVLLEKVIALLNP----APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69 HVPVLL++V+ LL P V +D T G GG+S + K +I LDRDP Sbjct: 3 EAARHVPVLLDRVLGLLAPALAGRDDAVFVDCTLGLGGHSEAVLKAHPGVRLIGLDRDPQ 62 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 A++ + + + ++ Q T+ + + V + VDG++ DLGVSS+Q+D +RGF++ + Sbjct: 63 AIALAKARLAPFADRVEFVQTTYDGIAEAVDGRRVDGILMDLGVSSLQLDARERGFAYSQ 122 Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRMS SG +A+DV+N +L R+L GEE+ A +IA A+V+ R PF T+ Sbjct: 123 DAPLDMRMSAGSGETAADVLNTYPAAELARVLRDYGEERFARKIAAAVVRERAKEPFTTS 182 Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 L L+ +V + + HPA R+FQALRI VN E+E L L +A L GG ++V Sbjct: 183 GRLVELLYASVPAATRRTGGHPAKRTFQALRIEVNRELESLRAALPAALSVLAVGGRIVV 242 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 S+ SLEDR+VK+ A + V + H +T+ V + ++ N R+ Sbjct: 243 ESYQSLEDRMVKRALADLAASRTPVGLPVELPGHGPELTLLTRGAEVANESEIEDNPRAA 302 Query: 308 SAKLRAGMRTVERS 321 +LRA R E + Sbjct: 303 PVRLRAAERIREAT 316 >gi|326779858|ref|ZP_08239123.1| Ribosomal RNA small subunit methyltransferase H [Streptomyces cf. griseus XylebKG-1] gi|326660191|gb|EGE45037.1| Ribosomal RNA small subunit methyltransferase H [Streptomyces cf. griseus XylebKG-1] Length = 321 Score = 347 bits (890), Expect = 2e-93, Method: Composition-based stats. Identities = 121/316 (38%), Positives = 180/316 (56%), Gaps = 13/316 (4%) Query: 20 HVPVLLEKVIALLNPA------PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAV 71 HVPV+L++ + LL PA P V++D T G GG+S + +IALDRD A+ Sbjct: 6 HVPVMLQRCLDLLAPALQDPAHPEPVVVDCTLGLGGHSEALLASFPAARLIALDRDKEAL 65 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQ 128 E + Y ++ +L A + +L + + G V GV+FDLGVSSMQ+D DRGF++ Sbjct: 66 RLSGERLAPYGDRATLVHAVYDELPEVLARLGIPKVQGVLFDLGVSSMQLDEADRGFAYA 125 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + PLDMRM S G+ A++V+N +L RIL GEEKQA RI A+V+ R+ PF Sbjct: 126 QDAPLDMRMDQSTGMGAAEVLNTYPPGELVRILRAYGEEKQAKRIVSAVVREREKEPFSN 185 Query: 188 TQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 + L LI+ + +K +PA R+FQALRI VN E+ L + + +A +L GG + Sbjct: 186 SARLVELIRDALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVDSLDVGGRIA 245 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+S+HSLEDRLVK+ FA+ + + + + +T+ +PT+++VA NRR+ Sbjct: 246 VLSYHSLEDRLVKQVFAAGAANTAPPGLPVVPERYQPRLKQLTRGAELPTEQEVAENRRA 305 Query: 307 RSAKLRAGMRTVERSI 322 A+LR R Sbjct: 306 APARLRGAQRIRAEER 321 >gi|148980580|ref|ZP_01816127.1| S-adenosyl-methyltransferase [Vibrionales bacterium SWAT-3] gi|145961163|gb|EDK26479.1| S-adenosyl-methyltransferase [Vibrionales bacterium SWAT-3] Length = 316 Score = 347 bits (890), Expect = 2e-93, Method: Composition-based stats. Identities = 115/323 (35%), Positives = 167/323 (51%), Gaps = 23/323 (7%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 M+ A H+ VLL + I L P +D TFG GG+SR+ + ++D Sbjct: 1 MTEAF-----KHISVLLNESIDGLAIKPDGTYIDGTFGRGGHSRTILSKLGENGRLFSID 55 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCG 121 RDP A++ Q+ +F++ FS + +Y VDGV+ DLGVSS Q+D Sbjct: 56 RDPQAIAEAQKI---DDPRFTIIHGPFSGMAEYAERYDLVGKVDGVLLDLGVSSPQLDDA 112 Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF K GPLDMRM SGI S + +A++ D+T ++ GE+K A RIA I+ + Sbjct: 113 ERGFSFMKDGPLDMRMDPTSGIPVSQWLLEADLDDITWVIREFGEDKHARRIAKGIIAYQ 172 Query: 181 QSA---PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 ++ P T L+ LI S + HPATR+FQA RI++N+E+EE+ L+ A Sbjct: 173 ENEENEPLTRTGQLAKLISDVAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAAS 232 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVV 293 L G L V+SFHSLEDR+VK+F S + + K + Sbjct: 233 ILAPEGRLSVISFHSLEDRMVKRFIRKESQGPQVPHGLPLTEEQIKALGSADLKPVGKAI 292 Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316 P++ +V N RSRS+ LR + Sbjct: 293 KPSKGEVDENTRSRSSVLRIAEK 315 >gi|256028668|ref|ZP_05442502.1| methyltransferase [Fusobacterium sp. D11] Length = 331 Score = 347 bits (890), Expect = 2e-93, Method: Composition-based stats. Identities = 108/325 (33%), Positives = 177/325 (54%), Gaps = 13/325 (4%) Query: 3 SKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-- 60 K+ + M + H+PVL + + L P + +D T G G +S + S+ Sbjct: 12 RKNGEFMEKIGND---YHIPVLYYETLDNLVINPDGIYIDCTLGGGSHSEGILERLSDKG 68 Query: 61 -VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSM 116 +I++D+D A+ ++ + + ++ +F+ F + GVD G++ D+GVSS Sbjct: 69 LLISIDQDINAIEYSKKRLEKFGSKWKVFKGNFENIDTIAYMAGVDKVDGILMDIGVSSK 128 Query: 117 QIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175 Q+D +RGFS++ LDMRM+ ISA DVVN + + L++I+ GEE+ A +IA Sbjct: 129 QLDDPERGFSYRYDVKLDMRMNTEQKISAYDVVNTYSEEQLSKIIFEYGEERHARKIAKL 188 Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 I++ R+S+P + T DL +LI++ + HPA ++FQA+RI VN E+E L + A Sbjct: 189 ILEERKSSPIEKTSDLITLIKRAYP--ERASKHPAKKTFQAIRIEVNRELEVLENAISKA 246 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVV 294 + LK GG L +++FHSLEDR+VK F + + I F+ ITKK ++ Sbjct: 247 AELLKVGGRLAIITFHSLEDRIVKNKFKDLATACKCPKDIPICVCGGVKKFEIITKKPII 306 Query: 295 PTQEDVAFNRRSRSAKLRAGMRTVE 319 P ++ N RS S+KLR R ++ Sbjct: 307 PIDNELKNNNRSHSSKLRILERILD 331 >gi|262377037|ref|ZP_06070263.1| MraW methylase [Acinetobacter lwoffii SH145] gi|262308075|gb|EEY89212.1| MraW methylase [Acinetobacter lwoffii SH145] Length = 303 Score = 347 bits (890), Expect = 2e-93, Method: Composition-based stats. Identities = 112/308 (36%), Positives = 163/308 (52%), Gaps = 16/308 (5%) Query: 20 HVPVLLEKVIALL-NPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H+ VLL + I L +D TFG GG++R + V A D+DP A++ Sbjct: 3 HISVLLHETIDALLAGRNTGTYVDGTFGRGGHTRLLLSKLDENARVYAFDKDPQALAVAA 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + +F + A+F+ L+D + + G VDGV+ DLGVSS Q+D +RGFSF K GP Sbjct: 63 E-LEQEDSRFKIIHASFADLKDALAELGIEHVDGVMADLGVSSPQLDQAERGFSFMKDGP 121 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G +A++ + Q + L I+ GEE+ + RIA AI TT L Sbjct: 122 LDMRMDNSQGPTAAEWLTQIEEEALANIIFKYGEERYSRRIAKAIKAA---GYIDTTAKL 178 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +++ + N+ H ATR+FQA+RI +N E+E++ L A + LK L V+SFH Sbjct: 179 AEIVKVAHPKWEKNK-HAATRTFQAIRIAINKELEDIEIFLPQAVEILKPEARLAVISFH 237 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDRL+K+F S +P + +++ V + E+V N RSRSA Sbjct: 238 SLEDRLIKQFIQKESTLEEDSGWGMPQQQKDTRRLKKVSR--VKASDEEVKANPRSRSAW 295 Query: 311 LRAGMRTV 318 LR R Sbjct: 296 LRVAERLA 303 >gi|149275993|ref|ZP_01882138.1| S-adenosyl-methyltransferase MraW [Pedobacter sp. BAL39] gi|149233421|gb|EDM38795.1| S-adenosyl-methyltransferase MraW [Pedobacter sp. BAL39] Length = 301 Score = 347 bits (890), Expect = 2e-93, Method: Composition-based stats. Identities = 115/304 (37%), Positives = 156/304 (51%), Gaps = 16/304 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 HVPV+L++ I LN P V +D TFG GG+SR K +I+ D+DP A Sbjct: 6 HVPVMLKECIDGLNIKPDGVYVDVTFGGGGHSREILKHLGKDGVLISFDQDPDAQLN--- 62 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + +F F+ L++ + G VDG++ DLGVSS Q D +RGFS + L Sbjct: 63 --KIDDPRFYFVDQNFAFLKNNLRLLGYKTVDGILADLGVSSHQFDVPERGFSTRFESLL 120 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM G + ASDV+N L +I GI GE K A +A+A+V R P + D Sbjct: 121 DMRMDKQGALKASDVLNTYTEDQLHKIFGIYGEVKNAKSLANAVVTGRLERPIASLADFK 180 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 + K ++ + FQALRI VN EI L L LK GG L+V+S+HS Sbjct: 181 RAAAAHIPKGKEHK--YMAQVFQALRIEVNAEITVLESFLMQTADVLKEGGRLVVMSYHS 238 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR VK F A K + + P F+ IT+K +V ++V N R+RSAKLR Sbjct: 239 LEDRPVKSFIAKGKFKGEVEKDFFGNELKP--FKVITRKAIVAEPDEVERNSRARSAKLR 296 Query: 313 AGMR 316 G + Sbjct: 297 IGEK 300 >gi|120437110|ref|YP_862796.1| S-adenosyl-methyltransferase MraW [Gramella forsetii KT0803] gi|171460858|sp|A0M534|RSMH_GRAFK RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|117579260|emb|CAL67729.1| S-adenosyl-methyltransferase MraW [Gramella forsetii KT0803] Length = 302 Score = 347 bits (890), Expect = 2e-93, Method: Composition-based stats. Identities = 103/304 (33%), Positives = 170/304 (55%), Gaps = 17/304 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H PVLL++ + L+ P + +D TFG GG+S+ K + A D+D A+ E Sbjct: 8 HNPVLLKESVDGLDVKPDGIYVDVTFGGGGHSKEILKRLGPDGKLYAFDQDKDALENKIE 67 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +F+L F L+ ++ G VDGV+ D GVSS Q + +RGFS + L Sbjct: 68 -----DGRFTLINENFRYLKRFLRFYGIKKVDGVLGDFGVSSHQFNEAERGFSTRFDAKL 122 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +SA +V+N+ + L ++ + K A ++A IV R++ P +T++ L+ Sbjct: 123 DMRMNQGDKLSAYEVINEYEEEQLKKLFWAYADLKNAPKLARTIVSERKNNPIETSEQLN 182 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 L++ ++ K N+I + +QA+RI VN EIE L + L E+ LK GG L ++S+HS Sbjct: 183 DLLKPLLFKGKENKI--LAQIYQAIRIEVNQEIEVLKEFLLQTEEILKPGGRLSLISYHS 240 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDRLVK++ S + + M + + P F+ + +++P++E++ N R+RSAKLR Sbjct: 241 LEDRLVKRYIRSGLFEGEPEKDMYGNISVP--FKKVN-GLIIPSKEEIQQNNRARSAKLR 297 Query: 313 AGMR 316 + Sbjct: 298 VARK 301 >gi|283458388|ref|YP_003363012.1| putative S-adenosylmethionine-dependent methyltransferase [Rothia mucilaginosa DY-18] gi|283134427|dbj|BAI65192.1| predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Rothia mucilaginosa DY-18] Length = 354 Score = 347 bits (890), Expect = 2e-93, Method: Composition-based stats. Identities = 116/317 (36%), Positives = 176/317 (55%), Gaps = 15/317 (4%) Query: 20 HVPVLLEKVIALLNP--------APGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPF 69 HVPV+L++ I LL P ++D T G GG+S + + N+ I +DRD Sbjct: 37 HVPVMLDRCINLLAPGIERAVEERGTAYVIDGTLGMGGHSEALLERFENLVLIGIDRDLQ 96 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFS 126 A + E + + E+F A + ++ + +G+DG++ DLGVSSMQ+D RGF+ Sbjct: 97 AHAIAGERLARFGERFVPVHAVYDEIDRAMETAGVQGIDGILMDLGVSSMQLDERTRGFA 156 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 + PLDMRM+ ++A VVN+ + L RI+ GEEK ASRIA AI R +AP Sbjct: 157 YSYDAPLDMRMNSEDELTARIVVNEYSEDQLRRIIRNWGEEKFASRIARAICTARANAPL 216 Query: 186 QTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 +TT +L +IQK V ++ HPA R+FQALRI VN+E+E L + + +A +AL GG Sbjct: 217 ETTGELVRIIQKAVPVAAQRTGGHPAKRTFQALRIEVNHELEALERAVPAALEALNLGGR 276 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 + +S+HSLED++VK+ + + + H + IT+ PT E++ N Sbjct: 277 FVAMSYHSLEDKIVKRALTAEATSKAPKGFPVELEEHKPTVKIITRGAEPPTDEEIEQNS 336 Query: 305 RSRSAKLRAGMRTVERS 321 R+ SAKLRA + + Sbjct: 337 RAASAKLRAAEKIRIPA 353 >gi|258404866|ref|YP_003197608.1| S-adenosyl-methyltransferase MraW [Desulfohalobium retbaense DSM 5692] gi|257797093|gb|ACV68030.1| S-adenosyl-methyltransferase MraW [Desulfohalobium retbaense DSM 5692] Length = 332 Score = 347 bits (890), Expect = 2e-93, Method: Composition-based stats. Identities = 120/325 (36%), Positives = 174/325 (53%), Gaps = 10/325 (3%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRD 67 + + T H VLL +V+ L P PG LD T G GG++ + + + V+ LDRD Sbjct: 8 TPSGIETRPLHQSVLLAEVLQALKPRPGGRYLDGTLGLGGHAEAILEHAPDSEVLGLDRD 67 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRG 124 A+ + + + ++ + Q +FS+ + G VDG + DLGVSS+Q+D +RG Sbjct: 68 GAALDAAEARLDRFGDRVHMAQISFSRFVSALDQLGWETVDGALIDLGVSSLQLDSPERG 127 Query: 125 FSFQKSGPLDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 FSF GPLDMRM A ++N+A+ + L RI+ GEE A RIA IV R+ Sbjct: 128 FSFLHDGPLDMRMDSGMGVPPAKSLLNKASQETLRRIIRDYGEEPMAGRIAKRIVMTREK 187 Query: 183 APFQTTQDLSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 P +TT L+ ++++ + +R HPAT++FQALRI VN E+EEL L + L Sbjct: 188 TPLETTLQLAHVVEQAYPAKRRAQSRNHPATKTFQALRIAVNKELEELEAFLEAIPDRLC 247 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQED 299 GG L V+SFHSLEDR+VK + + I + Q +TKK ++P+ E+ Sbjct: 248 VGGRLAVISFHSLEDRIVKHRLRREARGCRCPKEQPICVCGYRPRLQVLTKKPLLPSAEE 307 Query: 300 VAFNRRSRSAKLRAGMRTVERSIED 324 + N RSRSAKLR R D Sbjct: 308 MEANSRSRSAKLRVAERIEPEYPHD 332 >gi|194099359|ref|YP_002002459.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae NCCP11945] gi|239999615|ref|ZP_04719539.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae 35/02] gi|240014790|ref|ZP_04721703.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae DGI18] gi|240017238|ref|ZP_04723778.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae FA6140] gi|240081125|ref|ZP_04725668.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae FA19] gi|240113337|ref|ZP_04727827.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae MS11] gi|240121313|ref|ZP_04734275.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae PID24-1] gi|240124146|ref|ZP_04737102.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae PID332] gi|260439867|ref|ZP_05793683.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae DGI2] gi|193934649|gb|ACF30473.1| S-adenosyl-methyltransferase [Neisseria gonorrhoeae NCCP11945] gi|317164866|gb|ADV08407.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae TCDC-NG08107] Length = 306 Score = 347 bits (890), Expect = 2e-93, Method: Composition-based stats. Identities = 110/308 (35%), Positives = 165/308 (53%), Gaps = 10/308 (3%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRD 80 +L + + L V +D TFG GG+SR +I D+DP A++ +E + Sbjct: 1 MLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFDKDPQAIAVAEE-LAR 59 Query: 81 YKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 ++ + F+ Q + G VDG +FDLG+SS QID G RGFSF+ PLDMRM Sbjct: 60 SDKRVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGSRGFSFRFDAPLDMRM 119 Query: 138 SCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 + G+SA++ + A+ +DL ++ GEE+ + +I AIV +R +P TT+ L+ ++ Sbjct: 120 DTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIVRAIVAQRAESPIDTTRKLAQIVA 179 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 + V + + PATR+FQA+RIF+N E+EE+ L LK GG L V++FHSLEDR Sbjct: 180 QNVRTRERGQ-DPATRTFQAIRIFINRELEEVGAVLPQVMCRLKEGGRLAVIAFHSLEDR 238 Query: 257 LVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 +VK+F S A P I + + P + ++A N R+RSA LR Sbjct: 239 IVKQFVKKYSQHEPLPSWAAVREADLPEPPLKIVGRALKPGEAEIAANPRARSAVLRVAE 298 Query: 316 RTVERSIE 323 RT E Sbjct: 299 RTAGPIPE 306 >gi|258593046|emb|CBE69357.1| S-adenosyl-dependent methyl transferase [NC10 bacterium 'Dutch sediment'] Length = 301 Score = 347 bits (890), Expect = 2e-93, Method: Composition-based stats. Identities = 119/308 (38%), Positives = 172/308 (55%), Gaps = 21/308 (6%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPFAVSCG 74 G H+PVLLE+ +A L P PG LDAT G GG++ + + +DRD A++ Sbjct: 5 GRHLPVLLEETVAFLQPRPGGCYLDATVGLGGHAETLLIESAPTGCLCGIDRDVEALALA 64 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + + + L F+ L + DG++FDLG SS Q+D RGFSF + G Sbjct: 65 KGRLGQFGSRVELRYGDFASLGAIAAENEWRPFDGILFDLGFSSFQMDNASRGFSFMRDG 124 Query: 132 PLDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM G SA++++ + ++L R+L GEE+ A RIA IV+ R++ P +T Sbjct: 125 LLDMRMDRQGCDKSAAELLARIPERELARLLQDYGEERWAKRIAARIVEARRTQPLTSTA 184 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ L+ V RIH ATR+FQALRI VN+E+ L +GL++A + L GG + V+ Sbjct: 185 QLARLVAAAVPRRAWPRRIHVATRTFQALRIAVNDELARLRRGLQNAVELLAVGGRICVI 244 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDR+VK+ F + P + +TK+ VVPT+ + N R+RS Sbjct: 245 SFHSLEDRIVKEVFRGWARS------------EPPRVRLLTKRPVVPTERESEINPRARS 292 Query: 309 AKLRAGMR 316 AKLRA R Sbjct: 293 AKLRAAER 300 >gi|329848184|ref|ZP_08263212.1| S-adenosyl-methyltransferase MraW [Asticcacaulis biprosthecum C19] gi|328843247|gb|EGF92816.1| S-adenosyl-methyltransferase MraW [Asticcacaulis biprosthecum C19] Length = 317 Score = 346 bits (889), Expect = 2e-93, Method: Composition-based stats. Identities = 132/312 (42%), Positives = 192/312 (61%), Gaps = 5/312 (1%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQ 75 H+ VLL +V+ +L K+I+D TFGAGGYSR+F G+ V+A DRD + Sbjct: 3 EAAAHLSVLLPEVLTVLGNLEDKLIVDGTFGAGGYSRAFLLGGARVVAFDRDARVRPFVE 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +++ ++F FS++ + + + G D +V D+GVSSMQ+D DRGFSF + GP Sbjct: 63 ALSQEFPDRFQWVNRCFSEMAEGLAELGHASCDAIVLDIGVSSMQLDEADRGFSFMRDGP 122 Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 LDMRMS G SA+D+VN + D+ ++ + GEE ++ IA AIV+RR++ PF+ T DL+ Sbjct: 123 LDMRMSVDGRSAADIVNDDDKDDIAHVIWLYGEEHKSRSIASAIVRRREAQPFERTLDLA 182 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++++ + + +HPATR+FQALRI VN+E+ EL + L AE L+ G+L VV+FHS Sbjct: 183 EVVERALGGRRGAPVHPATRTFQALRIAVNDELGELERALEVAEILLRPDGVLAVVTFHS 242 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNA--HPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 LEDR+VK FF RSGK+ P V+ IT K V ++ ++A N RSRSAK Sbjct: 243 LEDRIVKNFFNDRSGKMAGGSRHAPQKLATRTPVYTLITPKAVQASEAEIAGNPRSRSAK 302 Query: 311 LRAGMRTVERSI 322 LRA R + Sbjct: 303 LRAVRRNRAPAG 314 >gi|318607135|emb|CBY28633.1| rrna small subunit methyltransferase H [Yersinia enterocolitica subsp. palearctica Y11] Length = 303 Score = 346 bits (889), Expect = 2e-93, Method: Composition-based stats. Identities = 116/309 (37%), Positives = 173/309 (55%), Gaps = 19/309 (6%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRD 80 +L++ + LN + +D TFG GG+SR +IA+DRDP A+ + Sbjct: 1 MLDEAVNGLNIRDNGIYIDGTFGRGGHSRLILSQLGPEGCLIAIDRDPQAIKAAKSI--- 57 Query: 81 YKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 +FS+ FS L YV + ++GV+ DLGVSS Q+D +RGFSF + GPLDMR Sbjct: 58 TDPRFSIVHGPFSDLAHYVRELDLVGRINGVLLDLGVSSPQLDDPERGFSFMRDGPLDMR 117 Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M + GISA++ + +A+ D+ +L GEE+ A R+A AIV+ + P T++L+ LI Sbjct: 118 MDPTRGISAAEWLMKASADDIAWVLKTFGEERFAKRLAKAIVECNLTQPMTRTKELADLI 177 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 F + ++ HPATRSFQA+RI++N+E+EE+ + L A + L G L V+SFHSLED Sbjct: 178 ANASPFREKHK-HPATRSFQAIRIYINSELEEIERALDGALEVLAPEGRLSVISFHSLED 236 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 R+VK F S + + A +S+ K ++P +VA N R+RS+ Sbjct: 237 RIVKNFIRHHSRGPQVPAGLPLTEAQLRSMGGRTLKSVGK--MMPPDAEVAENPRARSSV 294 Query: 311 LRAGMRTVE 319 LR R E Sbjct: 295 LRFAERIKE 303 >gi|255037275|ref|YP_003087896.1| S-adenosyl-methyltransferase MraW [Dyadobacter fermentans DSM 18053] gi|254950031|gb|ACT94731.1| S-adenosyl-methyltransferase MraW [Dyadobacter fermentans DSM 18053] Length = 305 Score = 346 bits (889), Expect = 2e-93, Method: Composition-based stats. Identities = 104/310 (33%), Positives = 162/310 (52%), Gaps = 12/310 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFA 70 + HVPV+L + + L P + +D TFG GG+SR+ + ++ D+DP A Sbjct: 1 MDSPSTYHVPVMLSECLEGLQIQPDGIYVDVTFGGGGHSRAILEKLTTGRLLVFDQDPDA 60 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSF 127 S E D +F+ A F L+ Y+ V+G++ DLGVSS QI+ +RGFS Sbjct: 61 ASNALEFKDDQ--RFTFIPANFRHLKRYLKLNKAPLVNGILADLGVSSHQINTPERGFST 118 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + LDMRM+ + +A +V+ + +L RILG+ GE A A AI+ R ++ + Sbjct: 119 RFDADLDMRMNPNIEKTAREVLKTRSAAELQRILGMYGEVTNARTAAEAIIAARYNSQIE 178 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T DL ++ + + N+ + FQALRI VN+E+ L + L + L G L+ Sbjct: 179 TVNDLKGILMRYAPKHRENK--YFAQVFQALRIEVNDELAVLEEFLAQVPEVLAPDGRLV 236 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+S+HSLEDRLVK + + + P +S+T+K + T E++A N R+ Sbjct: 237 VMSYHSLEDRLVKNYIQKGKFYGEVEKDFYGNEIKP--LKSVTRKPIEATAEEIAVNPRA 294 Query: 307 RSAKLRAGMR 316 RSAKLR + Sbjct: 295 RSAKLRIAEK 304 >gi|240116316|ref|ZP_04730378.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae PID18] gi|240118603|ref|ZP_04732665.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae PID1] gi|240128816|ref|ZP_04741477.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae SK-93-1035] Length = 306 Score = 346 bits (889), Expect = 3e-93, Method: Composition-based stats. Identities = 110/308 (35%), Positives = 165/308 (53%), Gaps = 10/308 (3%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRD 80 +L + + L V +D TFG GG+SR +I D+DP A++ +E + Sbjct: 1 MLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFDKDPQAIAVAEE-LAR 59 Query: 81 YKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 ++ + F+ Q + G VDG +FDLG+SS QID G RGFSF+ PLDMRM Sbjct: 60 SDKRVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGSRGFSFRFDAPLDMRM 119 Query: 138 SCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 + G+SA++ + A+ +DL ++ GEE+ + +I AIV +R +P TT+ L+ ++ Sbjct: 120 DTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIVRAIVAQRAESPIDTTRKLAQIVA 179 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 + V + + PATR+FQA+RIF+N E+EE+ L LK GG L V++FHSLEDR Sbjct: 180 QNVRTRERGQ-DPATRTFQAIRIFINRELEEVGAVLPQVMCRLKEGGRLAVIAFHSLEDR 238 Query: 257 LVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 +VK+F S A P I + + P + ++A N R+RSA LR Sbjct: 239 IVKQFVKKYSQHEPLPSWAAVREADLPDPPLKIVGRALKPGEAEIAANPRARSAVLRVAE 298 Query: 316 RTVERSIE 323 RT E Sbjct: 299 RTAGPIPE 306 >gi|298372234|ref|ZP_06982224.1| S-adenosyl-methyltransferase MraW [Bacteroidetes oral taxon 274 str. F0058] gi|298275138|gb|EFI16689.1| S-adenosyl-methyltransferase MraW [Bacteroidetes oral taxon 274 str. F0058] Length = 297 Score = 346 bits (889), Expect = 3e-93, Method: Composition-based stats. Identities = 104/305 (34%), Positives = 163/305 (53%), Gaps = 17/305 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 HVPVLLE+ I L P V +D TFG GG+SR+ N + D+D A + Sbjct: 3 HVPVLLEESIECLRIKPDGVYVDCTFGGGGHSRAILARLGNKGKLYGFDQDREAYRNTTD 62 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 E+F+ + F + +++ G VDG++ DLGVSS D +RGFS++ G L Sbjct: 63 -----DERFTFVRGNFKYISNFLRYYGEDKVDGILADLGVSSHHFDEAERGFSYRFDGTL 117 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +A +++N + + L IL + GE + A RIA+AIV RRQ+ +T +L+ Sbjct: 118 DMRMNREASFTAEELINGYDEQALADILYLYGELRNARRIANAIVCRRQTKAIKTIFELT 177 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +++ +K FQA+RI VN E++ L L + L++GG + V+S+HS Sbjct: 178 EVLRPFC--TKGKEYKELAPIFQAIRIEVNAELDSLKTLLCRSVDLLRSGGRIAVISYHS 235 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDRLVK F + + + + P F +++ K +V ++A N R+RSA+LR Sbjct: 236 LEDRLVKNFLKTGNFGGEPQKDFYGNQITP--FANVS-KAIVSNDREIADNPRARSARLR 292 Query: 313 AGMRT 317 + Sbjct: 293 YAEKI 297 >gi|134294639|ref|YP_001118374.1| S-adenosyl-methyltransferase MraW [Burkholderia vietnamiensis G4] gi|263446940|sp|A4JB86|RSMH_BURVG RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|134137796|gb|ABO53539.1| S-adenosyl-methyltransferase MraW [Burkholderia vietnamiensis G4] Length = 313 Score = 346 bits (888), Expect = 3e-93, Method: Composition-based stats. Identities = 115/311 (36%), Positives = 178/311 (57%), Gaps = 19/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VLL++ + L P + +D TFG GG+SR+ G +IA D+DP A+ + Sbjct: 7 HRTVLLDEAVDSLVTRPDGIYVDGTFGRGGHSRAVLARLAPGGRLIAFDKDPRAIETA-Q 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + D +FS+ +F+ ++D + +GV GV+ DLGVSS Q+D RGFSF+ GPL Sbjct: 66 RIEDA--RFSIVHDSFASMRDALAARGVEKVSGVLLDLGVSSPQVDDPARGFSFRADGPL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS----APFQTT 188 DMRM + G SA++ + +A+V++LT ++ GEE+ A +IA A+V RR P TT Sbjct: 124 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDTT 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ ++ V + PATR+FQA+RI VN E+ +L L +A L+ GG L+V+ Sbjct: 184 GELAQIVGHVVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVI 242 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDVAFNRRS 306 SFHSLEDR+VK+F + + R + + + I++ P++ +VA N R+ Sbjct: 243 SFHSLEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPPLKIISR--QFPSEAEVAANPRA 300 Query: 307 RSAKLRAGMRT 317 RSA +R R Sbjct: 301 RSAVMRIAERV 311 >gi|145223567|ref|YP_001134245.1| S-adenosyl-methyltransferase MraW [Mycobacterium gilvum PYR-GCK] gi|145216053|gb|ABP45457.1| S-adenosyl-methyltransferase MraW [Mycobacterium gilvum PYR-GCK] Length = 371 Score = 346 bits (888), Expect = 3e-93, Method: Composition-based stats. Identities = 117/310 (37%), Positives = 172/310 (55%), Gaps = 10/310 (3%) Query: 18 GDHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVS 72 HVPVLL++ + LL P G ++DAT GAGG+S F +I LDRDP A+ Sbjct: 59 QPHVPVLLDRCVELLAPALTREGATLVDATLGAGGHSERFLTDFPGLRLIGLDRDPDALR 118 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQK 129 E + + ++ +L + + + D V D VD ++FDLGVSSMQ+D +RGFS+ Sbjct: 119 IAGERLAPFADRITLVRTRYDGIADAVRDAAGGSVDAILFDLGVSSMQLDRVERGFSYST 178 Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM + ++A+ V+N + + L R+L GEEK A RIA IV+RR PF TT Sbjct: 179 DAPLDMRMDSGADLTAAQVLNSYDERALARVLREYGEEKFAGRIAAFIVRRRAVTPFTTT 238 Query: 189 QDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L L+ + ++ HPA R+FQALRI VN E+E L + +A +AL+ G L V Sbjct: 239 GELVELLYDAIPAPARRTGGHPAKRTFQALRIEVNAELESLRSAIPAALQALRPHGRLAV 298 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +++ SLEDR+VK FA+ + + H F ++T+ E++ N RS Sbjct: 299 MAYQSLEDRIVKTAFAAATASRTPPGLPVELPGHGPEFVALTRGAERADAEEIERNPRSA 358 Query: 308 SAKLRAGMRT 317 +LRA + Sbjct: 359 PVRLRAVEKV 368 >gi|289766581|ref|ZP_06525959.1| methyltransferase [Fusobacterium sp. D11] gi|289718136|gb|EFD82148.1| methyltransferase [Fusobacterium sp. D11] Length = 314 Score = 346 bits (888), Expect = 3e-93, Method: Composition-based stats. Identities = 106/308 (34%), Positives = 172/308 (55%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+PVL + + L P + +D T G G +S + S+ +I++D+D A+ ++ Sbjct: 9 HIPVLYYETLDNLVINPDGIYIDCTLGGGSHSEGILERLSDKGLLISIDQDINAIEYSKK 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + ++ +F+ F + GVD G++ D+GVSS Q+D +RGFS++ L Sbjct: 69 RLEKFGSKWKVFKGNFENIDTIAYMAGVDKVDGILMDIGVSSKQLDDPERGFSYRYDVKL 128 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ ISA DVVN + + L++I+ GEE+ A +IA I++ R+S+P + T DL Sbjct: 129 DMRMNTEQKISAYDVVNTYSEEQLSKIIFEYGEERHARKIAKLILEERKSSPIEKTSDLI 188 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +LI++ + HPA ++FQA+RI VN E+E L + A + LK GG L +++FHS Sbjct: 189 TLIKRAYP--ERASKHPAKKTFQAIRIEVNRELEVLENAISKAAELLKVGGRLAIITFHS 246 Query: 253 LEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK F + + I F+ ITKK ++P ++ N RS S+KL Sbjct: 247 LEDRIVKNKFKDLATACKCPKDIPICVCGGVKKFEIITKKPIIPIDNELKNNNRSHSSKL 306 Query: 312 RAGMRTVE 319 R R ++ Sbjct: 307 RILERILD 314 >gi|238026124|ref|YP_002910355.1| S-adenosyl-methyltransferase MraW [Burkholderia glumae BGR1] gi|237875318|gb|ACR27651.1| S-adenosyl-methyltransferase MraW [Burkholderia glumae BGR1] Length = 313 Score = 346 bits (888), Expect = 3e-93, Method: Composition-based stats. Identities = 116/316 (36%), Positives = 180/316 (56%), Gaps = 19/316 (6%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72 T H VLL++ + L P V +D TFG GG+SR+ G +IA D+DP A++ Sbjct: 3 TEFQHRTVLLDEAVDALVTRPDGVYVDGTFGRGGHSRAVLARLAEGGRLIAFDKDPLAIA 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQK 129 Q+ +FS+ +F+ L + ++GV GV+ DLGVSS QID +RGFSF+ Sbjct: 63 TAQQIA---DPRFSIVHDSFASLGGALAERGVARVTGVLLDLGVSSPQIDDPERGFSFRA 119 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS----AP 184 +GPLDMRM + G SA+D + +A++++LT ++ GEE+ A +IA A+V RR+ P Sbjct: 120 NGPLDMRMDTTRGESAADWLARASLQELTEVIRDYGEERFAFQIAKALVARREESDRLGP 179 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 +T +L+ ++ V + PATR+FQA+RI VN E+ +L L +A +L+ GG Sbjct: 180 LDSTGELAQIVGHAVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLGAALSSLEQGGR 238 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDVAF 302 L+V+SFHSLEDR+VK+F + + R + + + + +K P+ +V Sbjct: 239 LVVISFHSLEDRIVKRFLQTHASAPAVDRRLPIRAVDLPSPPLKLLGRK--FPSDAEVDA 296 Query: 303 NRRSRSAKLRAGMRTV 318 N R+RSA +R R Sbjct: 297 NPRARSAVMRIAERVA 312 >gi|254446788|ref|ZP_05060263.1| S-adenosyl-methyltransferase MraW [Verrucomicrobiae bacterium DG1235] gi|198256213|gb|EDY80522.1| S-adenosyl-methyltransferase MraW [Verrucomicrobiae bacterium DG1235] Length = 305 Score = 346 bits (887), Expect = 4e-93, Method: Composition-based stats. Identities = 112/302 (37%), Positives = 166/302 (54%), Gaps = 5/302 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQETM 78 HVPVL + + L P+ G + LD TFG GG++ + V+ALD+DP AV+ E Sbjct: 4 HVPVLAAETLEHLAPSDGGLYLDCTFGGGGHTELVLEAANCTVVALDQDPAAVARAAELK 63 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138 Y ++ + F L + + DG++FD GVSS Q+D DRGFSF+ PLDMRM Sbjct: 64 ERYGDRLRFHRMNFETLDQ-LEEGPFDGILFDFGVSSFQLDEVDRGFSFRGEAPLDMRMD 122 Query: 139 C-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK 197 SG+SA+ + A+ DL R + EEK +I +AI+ R+ TT L+ LI Sbjct: 123 PESGVSAAQWLATADQADLLRAIRGYAEEKNWRKIVNAILAAREKNELSTTTQLADLILS 182 Query: 198 TVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 +++HPAT+ FQ +RI +N+EI + +GL +A LK GG+L +SFHSLED Sbjct: 183 CTPARVRFNSKLHPATKVFQGIRIAINDEIGVIERGLPAAFDKLKTGGILCAISFHSLED 242 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 R+ K + +G+ R P + + + K+ + + ++VA N RSRSAKLR Sbjct: 243 RVAKVLYRRWAGRPEGSRDNRPQDMRVTRAELLGKRPITASDKEVAVNPRSRSAKLRVLK 302 Query: 316 RT 317 + Sbjct: 303 KI 304 >gi|298207891|ref|YP_003716070.1| S-adenosyl-methyltransferase mraW [Croceibacter atlanticus HTCC2559] gi|83850532|gb|EAP88400.1| S-adenosyl-methyltransferase mraW [Croceibacter atlanticus HTCC2559] Length = 298 Score = 346 bits (887), Expect = 4e-93, Method: Composition-based stats. Identities = 105/304 (34%), Positives = 163/304 (53%), Gaps = 17/304 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H PVLL + + LN P V +D TFG GG+S+ + A D+D A+ E Sbjct: 4 HNPVLLHETVDGLNIKPDGVYVDVTFGGGGHSKEILNRLGPNGKLFAFDQDQDALENALE 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++F+L F + +V +G VDG++ D GVSS Q D +RGFS + L Sbjct: 64 -----DDRFTLIPQNFRYAKRFVRVQGYKTVDGILGDFGVSSHQFDVAERGFSTRFDSRL 118 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ + +SA +VVN L ++L GE + A ++A AI R+ P +T++ L Sbjct: 119 DMRMNQNDALSAYEVVNTYEEGKLRQVLSQYGELRNAPKLARAIYGARKDTPIETSEHLK 178 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I + K +++ + +QA+RI VN E+E L + L+ E L GG L ++S+HS Sbjct: 179 EVINSFLPRGKEHKM--LAQIYQAIRIEVNQELEVLKEFLKQTEDMLTTGGRLSLISYHS 236 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDRLVK++ S + + + P F+ + K++VP +++A N R+RSAKLR Sbjct: 237 LEDRLVKRYIRSGLFEGEPEKDFYGNIEVP--FKKV-GKLIVPNAKEIATNNRARSAKLR 293 Query: 313 AGMR 316 R Sbjct: 294 VAER 297 >gi|258542962|ref|YP_003188395.1| S-adenosyl-methyltransferase MraW [Acetobacter pasteurianus IFO 3283-01] gi|256634040|dbj|BAI00016.1| methytransferase MraW [Acetobacter pasteurianus IFO 3283-01] gi|256637100|dbj|BAI03069.1| methytransferase MraW [Acetobacter pasteurianus IFO 3283-03] gi|256640152|dbj|BAI06114.1| methytransferase MraW [Acetobacter pasteurianus IFO 3283-07] gi|256643209|dbj|BAI09164.1| methytransferase MraW [Acetobacter pasteurianus IFO 3283-22] gi|256646264|dbj|BAI12212.1| methytransferase MraW [Acetobacter pasteurianus IFO 3283-26] gi|256649317|dbj|BAI15258.1| methytransferase MraW [Acetobacter pasteurianus IFO 3283-32] gi|256652303|dbj|BAI18237.1| methytransferase MraW [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655361|dbj|BAI21288.1| methytransferase MraW [Acetobacter pasteurianus IFO 3283-12] Length = 335 Score = 346 bits (887), Expect = 4e-93, Method: Composition-based stats. Identities = 137/325 (42%), Positives = 188/325 (57%), Gaps = 15/325 (4%) Query: 6 CKTMSSAIH-HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIA 63 +SS H T H+PV+L +V+ L+PA G+ ILD TFG GGYS + K NV Sbjct: 1 MNALSSFSHPETAQGHIPVMLAEVLEYLHPADGERILDCTFGGGGYSSAILKSADCNVWG 60 Query: 64 LDRDPFAVSCGQETMRDY-----KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSS 115 +DRDP A++ GQ R + + L Q +F + G+ DG+V DLGVSS Sbjct: 61 IDRDPDAIARGQVLSRTFPTADGGSRLHLLQGSFGNMLALASAAGISTFDGIVLDLGVSS 120 Query: 116 MQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175 Q+D DRGFSF+ GPLDMRM SG SA+D+VN+A +L I GEE+ A R+A A Sbjct: 121 FQLDEADRGFSFRMEGPLDMRMEKSGPSAADIVNKAPEAELADIFHFYGEERHARRLARA 180 Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 +V R APFQTT L+ L++ + + + I ATR+FQ LRI VN+E+ E+ +GL A Sbjct: 181 VVNARSEAPFQTTTQLADLVRSVIPKDR-SGIDSATRAFQGLRIAVNDELGEIERGLEQA 239 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP----SNAHPAVFQSITKK 291 L GG L+VVSFHSLEDR+ K+ +GK + P + A F ++T K Sbjct: 240 LDMLAPGGRLVVVSFHSLEDRIAKRMVQHATGKDKSFSRYDPRAAGTPAPETDFVALTHK 299 Query: 292 VVVPTQEDVAFNRRSRSAKLRAGMR 316 P+ + + N R+RSA+LRA M+ Sbjct: 300 ARRPSDTECSHNPRARSARLRAVMK 324 >gi|323341698|ref|ZP_08081931.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464123|gb|EFY09316.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Erysipelothrix rhusiopathiae ATCC 19414] Length = 303 Score = 346 bits (887), Expect = 4e-93, Method: Composition-based stats. Identities = 106/305 (34%), Positives = 172/305 (56%), Gaps = 10/305 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76 H+ V+L + I LLN P + +DAT GAGG+S CK +I D+D A+ + Sbjct: 2 KHISVMLNETIELLNINPEGIYVDATLGAGGHSYEICKQLTTGRLIGFDKDLDAIERTSK 61 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + ++ ++ +++QL + + + G VDGV+FDLGVSS Q D +RGFS++ L Sbjct: 62 RLEVFGDKVTMVHGSYTQLTEKLNELGIDEVDGVLFDLGVSSPQFDDAERGFSYRFDSRL 121 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + +SA +VVN+ + L +IL +E+ A RI I++ R P +TT +L Sbjct: 122 DMRMDQTQALSAYEVVNEYEEEHLVQILKDNSDERYARRIVKNIIENR---PVETTFELV 178 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 LI+++ + HPA ++FQALRI VNNE EE+ + A +K GG ++V++FHS Sbjct: 179 ELIKRSYPGKDLKKGHPAKKTFQALRIEVNNEFEEVKDAVEQAVHVIKPGGRVVVITFHS 238 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 +EDR+VK+ F++ + ++ ++ K + + E++ FN R+ SA LR Sbjct: 239 IEDRIVKRIFSNYGKPKKVDPRLPIIEEQVLNYKLVS-KALKASTEELEFNNRAHSAILR 297 Query: 313 AGMRT 317 R Sbjct: 298 GIERV 302 >gi|21220572|ref|NP_626351.1| S-adenosyl-methyltransferase MraW [Streptomyces coelicolor A3(2)] gi|289772183|ref|ZP_06531561.1| methylase MraW [Streptomyces lividans TK24] gi|20139275|sp|Q9S2W4|RSMH_STRCO RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|5689964|emb|CAB52001.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)] gi|289702382|gb|EFD69811.1| methylase MraW [Streptomyces lividans TK24] Length = 310 Score = 346 bits (887), Expect = 4e-93, Method: Composition-based stats. Identities = 119/306 (38%), Positives = 180/306 (58%), Gaps = 10/306 (3%) Query: 24 LLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETM 78 +L++ + LL PA PG V++D T G GG+S + + ++ALDRD A+ E + Sbjct: 2 MLQRCLDLLAPALQEPGAVVVDCTLGLGGHSEALLERFPEARLVALDRDKEALRLSGERL 61 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 Y + +L A + +L D + GV GV+FDLGVSSMQ+D DRGF++ + PLDM Sbjct: 62 APYGGRATLVHAVYDELPDVLDRLGVPRVQGVLFDLGVSSMQLDEADRGFAYAQDAPLDM 121 Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM S G+SA++V+N +L RIL GEEKQA RI A+V+ R+ PF + L L Sbjct: 122 RMDQSTGMSAAEVLNTYPPGELVRILRAYGEEKQAKRIVSAVVREREKEPFTNSARLVEL 181 Query: 195 IQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 I+ + +K +PA R+FQALRI VN E+ L + + +A +++ GG + V+S+HSL Sbjct: 182 IRAALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVESVAVGGRIAVLSYHSL 241 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 EDRLVK+ FA+ + + + + +T+ +PT+E++A NRR+ A+LR Sbjct: 242 EDRLVKQVFAAGAANTAPPGLPVVPEQYAPRLKLLTRGAELPTEEEIAENRRAAPARLRG 301 Query: 314 GMRTVE 319 R E Sbjct: 302 AERIRE 307 >gi|288958915|ref|YP_003449256.1| S-adenosyl-methyltransferase [Azospirillum sp. B510] gi|288911223|dbj|BAI72712.1| S-adenosyl-methyltransferase [Azospirillum sp. B510] Length = 324 Score = 346 bits (887), Expect = 4e-93, Method: Composition-based stats. Identities = 132/292 (45%), Positives = 177/292 (60%), Gaps = 7/292 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78 H+PVLL++VIA L P G + +D TFGAGGYSR+ + S VI +DRDP A+ G+ Sbjct: 7 HIPVLLDEVIAALAPRDGALYVDGTFGAGGYSRALLRSASCRVIGIDRDPAAIERGRVLA 66 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 +++ + + + F + + GVD GV D+GVSS QID +RGFSF+ GPLDM Sbjct: 67 QEFPGRLDVIEGRFGDMDQLLARHGVDRVDGVALDVGVSSPQIDEPERGFSFRFDGPLDM 126 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RM G +A+DVVN A+ +L IL LGEE+ A R+A AIV R+ AP + T L+ +I Sbjct: 127 RMGRDGPTAADVVNGADEGELADILYHLGEERMARRVARAIVAARREAPIERTARLADII 186 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + V K + I PATRSFQALRI VN+E+ EL +GL +AE L GG L VVSFHSLED Sbjct: 187 RSVVPKGKGDGIDPATRSFQALRIHVNDELGELRRGLSAAESLLAPGGRLAVVSFHSLED 246 Query: 256 RLVKKFFASRSGKVMAVRHMIPSN---AHPAVFQSITKKVVVPTQEDVAFNR 304 R VK F RS + P AH F+ +++K V P++ + N Sbjct: 247 REVKAFLRERSSPPPSPSRHTPVTAVAAHHPSFRLLSRKPVDPSEAEARNNP 298 >gi|237743305|ref|ZP_04573786.1| methyltransferase [Fusobacterium sp. 7_1] gi|229433084|gb|EEO43296.1| methyltransferase [Fusobacterium sp. 7_1] Length = 314 Score = 346 bits (887), Expect = 4e-93, Method: Composition-based stats. Identities = 105/308 (34%), Positives = 171/308 (55%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+PVL + + L P + +D T G G +S + S+ +I++D+D A+ ++ Sbjct: 9 HIPVLYYETLDNLVINPDGIYIDCTLGGGSHSEGILERLSDKGLLISIDQDSTAIEYSKK 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + ++ +F+ F + GVD G++ D+GVSS Q+D RGFS++ L Sbjct: 69 RLEKFGSKWKVFKGNFENIDTIAYTAGVDKVDGILMDIGVSSKQLDDPKRGFSYRYDVKL 128 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ ISA D+VN + L++I+ GEE+ A +IA IV+ R+S+P + T DL Sbjct: 129 DMRMNTDQKISAYDIVNTYTEEQLSKIIFEYGEERHARKIAKLIVEERKSSPIEKTSDLI 188 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +LI++ + HPA ++FQA+RI VN E+E L + A + LK GG L +++FHS Sbjct: 189 TLIKRAYP--ERASKHPAKKTFQAIRIEVNRELEVLGNAISKAAELLKVGGRLAIITFHS 246 Query: 253 LEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK F + + I F+ ITKK ++P +++ N R+ S+KL Sbjct: 247 LEDRIVKNKFKDLATACKCPKDIPICVCGGVKKFEIITKKPIIPIDDELKNNNRAHSSKL 306 Query: 312 RAGMRTVE 319 R R ++ Sbjct: 307 RILERILD 314 >gi|188584364|ref|YP_001927809.1| S-adenosyl-methyltransferase MraW [Methylobacterium populi BJ001] gi|263456461|sp|B1Z8U3|RSMH_METPB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|179347862|gb|ACB83274.1| S-adenosyl-methyltransferase MraW [Methylobacterium populi BJ001] Length = 351 Score = 346 bits (887), Expect = 4e-93, Method: Composition-based stats. Identities = 139/306 (45%), Positives = 186/306 (60%), Gaps = 8/306 (2%) Query: 38 KVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95 + +D TFGAGGY+R+ + G VIA+DRDP A+ G + + + L Q F L Sbjct: 38 GLAVDGTFGAGGYTRALLESGPDMRVIAIDRDPTAIRAGADLVEGAGGRLRLVQGRFGDL 97 Query: 96 QDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQAN 152 + D+G D VV D+GVSSMQ+D RGFSF++ GPLDMRM G SA+D+VN Sbjct: 98 DTLLADQGEAQADWVVLDIGVSSMQLDEAHRGFSFRQDGPLDMRMGGEGPSAADLVNGEE 157 Query: 153 VKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATR 212 L IL GEE+++ +A AIV+ R+ AP TT L+ LI V + IHPATR Sbjct: 158 ESTLADILYHFGEERRSRAVARAIVEARRRAPIATTAQLADLIAGVVRPEPGSPIHPATR 217 Query: 213 SFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAV 272 SFQ LRI VN+E+ EL +GL +AE+ LK GG L VV+FHSLEDR+VK+FF++RSG+ Sbjct: 218 SFQGLRIAVNDELGELVRGLHAAERVLKPGGRLAVVTFHSLEDRIVKQFFSARSGRAAQA 277 Query: 273 RHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDDSFVH- 329 +P PA F+ +TK V+P++ + N R+RSAKLRAG RT + S + Sbjct: 278 SRHLPGVERPAPKSFRLVTKGPVLPSEAETEVNPRARSAKLRAGERTDGPAPPPLSAIET 337 Query: 330 LPRLPT 335 L LP Sbjct: 338 LASLPA 343 >gi|256788289|ref|ZP_05526720.1| hypothetical protein SlivT_27704 [Streptomyces lividans TK24] Length = 309 Score = 346 bits (887), Expect = 4e-93, Method: Composition-based stats. Identities = 119/306 (38%), Positives = 180/306 (58%), Gaps = 10/306 (3%) Query: 24 LLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETM 78 +L++ + LL PA PG V++D T G GG+S + + ++ALDRD A+ E + Sbjct: 1 MLQRCLDLLAPALQEPGAVVVDCTLGLGGHSEALLERFPEARLVALDRDKEALRLSGERL 60 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 Y + +L A + +L D + GV GV+FDLGVSSMQ+D DRGF++ + PLDM Sbjct: 61 APYGGRATLVHAVYDELPDVLDRLGVPRVQGVLFDLGVSSMQLDEADRGFAYAQDAPLDM 120 Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM S G+SA++V+N +L RIL GEEKQA RI A+V+ R+ PF + L L Sbjct: 121 RMDQSTGMSAAEVLNTYPPGELVRILRAYGEEKQAKRIVSAVVREREKEPFTNSARLVEL 180 Query: 195 IQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 I+ + +K +PA R+FQALRI VN E+ L + + +A +++ GG + V+S+HSL Sbjct: 181 IRAALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVESVAVGGRIAVLSYHSL 240 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 EDRLVK+ FA+ + + + + +T+ +PT+E++A NRR+ A+LR Sbjct: 241 EDRLVKQVFAAGAANTAPPGLPVVPEQYAPRLKLLTRGAELPTEEEIAENRRAAPARLRG 300 Query: 314 GMRTVE 319 R E Sbjct: 301 AERIRE 306 >gi|161344767|ref|NP_440820.2| S-adenosyl-methyltransferase MraW [Synechocystis sp. PCC 6803] Length = 297 Score = 346 bits (887), Expect = 5e-93, Method: Composition-based stats. Identities = 123/323 (38%), Positives = 177/323 (54%), Gaps = 35/323 (10%) Query: 4 KSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV-- 61 + K + A H HV VL ++ L P PG LDAT GAGG+S K+G + Sbjct: 1 MNLKQTAIADFH----HVSVLPTALVEGLEPKPGGYYLDATVGAGGHSERLLKLGIPLAL 56 Query: 62 IALDRDPFAVSCGQETMRDY-KEQ----FSLFQATFSQLQDYVPDKGVDGVVFDLGVSSM 116 +DRD A++ E ++ ++ + +Q F+ + DG++ DLGVSS Sbjct: 57 TMIDRDVQAIAAAMERLQPLVADRKDISINTWQGNFADFPGQLEQ--FDGIIADLGVSSP 114 Query: 117 QIDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175 Q+D GDRGFSF+ + PLDMRM S ++A++++N + KDL RI GEE+ + RIA Sbjct: 115 QLDQGDRGFSFRHTAPLDMRMDQSQDLTAAEIINHWSEKDLARIFYEYGEERLSRRIARQ 174 Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234 IV++R PFQTT DL+ I K V ++ RIHPATR+FQ LRI VN+E+ L + + Sbjct: 175 IVEQR---PFQTTTDLAEAITKWVPGKYRHGRIHPATRTFQGLRIAVNDELGSLEKFIAQ 231 Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVV 294 A LK+GG ++SFHSLEDR+VK F + +TKK ++ Sbjct: 232 APHWLKSGGKFGIISFHSLEDRIVKHRFRETEN-----------------LRVLTKKPII 274 Query: 295 PTQEDVAFNRRSRSAKLRAGMRT 317 +E+ N R+RSAKLR + Sbjct: 275 AGEEEQRQNPRARSAKLRWAEKI 297 >gi|301063241|ref|ZP_07203790.1| S-adenosyl-methyltransferase MraW [delta proteobacterium NaphS2] gi|300442669|gb|EFK06885.1| S-adenosyl-methyltransferase MraW [delta proteobacterium NaphS2] Length = 341 Score = 345 bits (886), Expect = 5e-93, Method: Composition-based stats. Identities = 98/314 (31%), Positives = 166/314 (52%), Gaps = 10/314 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPF 69 I + HVPVLL++ + LN P + +D T G+GG+S ++ LD+DP Sbjct: 27 IQTSNYPHVPVLLQEAVRYLNLKPEGIYVDGTVGSGGHSMEILSHLPENSSLVCLDQDPD 86 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFS 126 A+ ++ +R + A F+ L + +DG++ DLG+SS QI+ RGFS Sbjct: 87 AIRLSRKRLRS-DNRVQFIHANFADLGRVMQDLAINRIDGILLDLGMSSYQIEKSGRGFS 145 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 F + PLDMRM+ + D++N +++ L +L GEE++ +A AIV+ R+ Sbjct: 146 FSREEPLDMRMNPDHKPTGMDLINSLSLESLQALLREYGEEQKFKTLARAIVRARERETI 205 Query: 186 QTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 +T L+ +I++ S + + HPAT++FQA+RI +N E+E L L+ + GG Sbjct: 206 KTASQLAHIIEEATPKSHRPWKRHPATKTFQAVRIAINKEMESLETFLQEIPSLMAVGGR 265 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 L+V+S+HSLEDR +K+ + + +F+ + K+ + P + ++ FN Sbjct: 266 LVVISYHSLEDRQIKRAMVQWEKTCTCPPDFPVCACQKTRIFKRVFKRGLKPDEREIHFN 325 Query: 304 RRSRSAKLRAGMRT 317 R+RSA +R R Sbjct: 326 PRARSAIMRVAERI 339 >gi|83312939|ref|YP_423203.1| S-adenosyl-methyltransferase MraW [Magnetospirillum magneticum AMB-1] gi|123540765|sp|Q2W0I1|RSMH_MAGSA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|82947780|dbj|BAE52644.1| S-adenosyl-methyltransferase mraW [Magnetospirillum magneticum AMB-1] Length = 318 Score = 345 bits (886), Expect = 5e-93, Method: Composition-based stats. Identities = 131/300 (43%), Positives = 182/300 (60%), Gaps = 8/300 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCG 74 + H+PVLL +VIA L P V LD TFGAGGYSR+ V A+DRDP AV+ G Sbjct: 2 SPQPHIPVLLAEVIAALAPRNDGVYLDGTFGAGGYSRAILAASACRVWAIDRDPTAVARG 61 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +FS+ + F + + +GV DG+ D+GVSSMQID +RGFSF K G Sbjct: 62 KLLEEGSAGRFSMIEGRFGDMDSLLRQQGVNQVDGIALDIGVSSMQIDQPERGFSFAKDG 121 Query: 132 PLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 PLDMRM G SA+D+VN +L I+ GEE+ + R+A AIV+ R+ F+ T +L Sbjct: 122 PLDMRMETKGPSAADMVNDTPETELANIIYRYGEERLSRRVAKAIVEARRLKRFERTGEL 181 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +++K V S + I PATR+FQALRI VN+E+ EL +GL +AE+ L GG L VV+FH Sbjct: 182 AEVVRKVVPRS-GDGIDPATRTFQALRIAVNDELGELERGLEAAERLLAPGGHLAVVTFH 240 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPS---NAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SLEDR+VK F +RSG+ +P + A F +++K + P ++ N R+RS Sbjct: 241 SLEDRVVKSFLKARSGEAARPSRHVPQAQGSGPAASFALLSRKAIGPAPDEARANPRARS 300 >gi|315443914|ref|YP_004076793.1| S-adenosyl-methyltransferase MraW [Mycobacterium sp. Spyr1] gi|315262217|gb|ADT98958.1| S-adenosyl-methyltransferase MraW [Mycobacterium sp. Spyr1] Length = 353 Score = 345 bits (886), Expect = 5e-93, Method: Composition-based stats. Identities = 117/310 (37%), Positives = 172/310 (55%), Gaps = 10/310 (3%) Query: 18 GDHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVS 72 HVPVLL++ + LL P G ++DAT GAGG+S F +I LDRDP A+ Sbjct: 41 QPHVPVLLDRCVELLAPALTREGATLVDATLGAGGHSERFLTDFPGLRLIGLDRDPDALR 100 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQK 129 E + + ++ +L + + + D V D VD ++FDLGVSSMQ+D +RGFS+ Sbjct: 101 IAGERLAPFADRITLVRTRYDGIADAVRDAAGGSVDAILFDLGVSSMQLDRVERGFSYST 160 Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM + ++A+ V+N + + L R+L GEEK A RIA IV+RR PF TT Sbjct: 161 DAPLDMRMDSGADLTAAQVLNSYDERALARVLREYGEEKFAGRIAAFIVRRRAVTPFTTT 220 Query: 189 QDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L L+ + ++ HPA R+FQALRI VN E+E L + +A +AL+ G L V Sbjct: 221 GELVELLYDAIPAPARRTGGHPAKRTFQALRIEVNAELESLRSAIPAALQALRPHGRLAV 280 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +++ SLEDR+VK FA+ + + H F ++T+ E++ N RS Sbjct: 281 MAYQSLEDRIVKTAFAAATASRTPPGLPVELPGHGPEFVALTRGAERADAEEIERNPRSA 340 Query: 308 SAKLRAGMRT 317 +LRA + Sbjct: 341 PVRLRAVEKV 350 >gi|120404503|ref|YP_954332.1| S-adenosyl-methyltransferase MraW [Mycobacterium vanbaalenii PYR-1] gi|119957321|gb|ABM14326.1| S-adenosyl-methyltransferase MraW [Mycobacterium vanbaalenii PYR-1] Length = 378 Score = 345 bits (886), Expect = 6e-93, Method: Composition-based stats. Identities = 115/316 (36%), Positives = 176/316 (55%), Gaps = 17/316 (5%) Query: 19 DHVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDP 68 H+PVLL++ + LL PA G ++DAT GAGG+S F +I LDRDP Sbjct: 60 PHIPVLLDRCVELLAPALTRTSTDGSGATLVDATLGAGGHSERFLTQFPALRLIGLDRDP 119 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD-----KGVDGVVFDLGVSSMQIDCGDR 123 A+ + + + ++ +L + + + V + GVD ++FDLGVSSMQ+D +R Sbjct: 120 DALHIAGDRLARFGDRVTLVRTRYDGIAAAVAESNCAATGVDAILFDLGVSSMQLDRVER 179 Query: 124 GFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GF++ PLDMRM S ++A+ V+N + K L R+L + GEEK A RIA IV+RR + Sbjct: 180 GFAYSVDAPLDMRMDSGSDLTAAQVLNTYDEKALARVLRVYGEEKFAGRIAAQIVRRRAN 239 Query: 183 APFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 PF TT +L L+ + + ++ HPA R+FQALRI VN E+E L + +A + L+ Sbjct: 240 TPFSTTGELVELLYQAIPAPARRTGGHPAKRTFQALRIEVNAELESLRLAIPAALEVLRP 299 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 G + V+++ SLEDR+VK FA+ + + H F ++T+ E++ Sbjct: 300 HGRIAVMAYQSLEDRIVKTEFAAATASRTPPGLPVELPGHGPRFVALTRGAERADAEEIE 359 Query: 302 FNRRSRSAKLRAGMRT 317 N RS S +LRA + Sbjct: 360 RNPRSASVRLRALEKV 375 >gi|330718673|ref|ZP_08313273.1| 16S rRNA m(4)C1402 methyltranserfase [Leuconostoc fallax KCTC 3537] Length = 317 Score = 345 bits (886), Expect = 6e-93, Method: Composition-based stats. Identities = 104/309 (33%), Positives = 160/309 (51%), Gaps = 10/309 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76 +H VLL + IALL+ P + +DAT G GG++ K + + D+D A+ + Sbjct: 4 EHTTVLLHEAIALLDINPEGIYVDATLGGGGHTGEILKQLTTGKLYSFDQDDTAIHYNKA 63 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 D + L F L + G V+G+V+DLGVSS+Q D G RGFS+ Sbjct: 64 QYADEITAGKLILVHQNFRNLTHVLHQDGITSVNGIVYDLGVSSVQFDDGQRGFSYNYDA 123 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM ++A +VN+ DL R+L GE++ A IA I + R+ +TT + Sbjct: 124 ELDMRMDQRQALTAKIIVNEWPFNDLLRVLSRYGEDRFAKSIARKIEQYREKQLIETTFE 183 Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I+ + ++ HPA R+FQALR+ VN+E+ L L A L G + V++ Sbjct: 184 LVDIIKDAIPAPARRKGGHPAKRTFQALRVAVNDELGALEDSLTQAIDLLGINGKISVIT 243 Query: 250 FHSLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 F SLEDRLVK+ F + S + + ++ +K ++P+Q+++A N R+ S Sbjct: 244 FQSLEDRLVKQMFREKVSLPELPAGLPLLPEQIEVDYRLSNRKPILPSQQEIAHNHRAES 303 Query: 309 AKLRAGMRT 317 AKLR R Sbjct: 304 AKLRGIERI 312 >gi|326334986|ref|ZP_08201186.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692791|gb|EGD34730.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 314 Score = 345 bits (886), Expect = 6e-93, Method: Composition-based stats. Identities = 112/307 (36%), Positives = 164/307 (53%), Gaps = 17/307 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+PVLL + I L P +DATFG GG+SR+ S+ +IA D+DP A E Sbjct: 7 HIPVLLSQTIEGLALNPEGTYVDATFGGGGHSRAILAQLSHNGRLIAFDQDPQAQGNIIE 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 E+F L F ++ ++ GV +GV+ D GVSS Q D RGFS + PL Sbjct: 67 -----DERFMLIPQNFRYIKRFLRFYGVRQVEGVLADFGVSSYQFDTAQRGFSTRFEAPL 121 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +SA +VVN +L+ +L GE + A +IA ++ +RQ +P +TT DL Sbjct: 122 DMRMNQEQPLSAFEVVNTYTESELSELLYRYGELRNAKQIARTLIAQRQISPIRTTMDLR 181 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 + +Q + K N++ +QA+RI VN E+ L + L + +K GG + ++S+HS Sbjct: 182 NAVQAFLPKGKENKV--LAPLYQAIRIEVNQELAALEEFLLQLPEVVKQGGRIALISYHS 239 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDRLVK+F + N P + K +VP+ E++A N R+RSAKLR Sbjct: 240 LEDRLVKRFIRDGQCSGEPQKDFYG-NTFPPFVKI--GKPIVPSPEEIALNNRARSAKLR 296 Query: 313 AGMRTVE 319 RT Sbjct: 297 IAERTEN 303 >gi|289671027|ref|ZP_06492102.1| S-adenosyl-methyltransferase MraW [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 352 Score = 345 bits (886), Expect = 6e-93, Method: Composition-based stats. Identities = 121/332 (36%), Positives = 181/332 (54%), Gaps = 11/332 (3%) Query: 12 AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDP 68 + + HVPVL +V+ L LD TFG GG++R + G ++ +D+DP Sbjct: 10 PVSQSPAAHVPVLYTQVLDGLQVTDNGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDP 69 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 A++ ++T + S+ + +F+ L V VDG++ DLGVSS Q+D RGFSF Sbjct: 70 EAIAVAEQTFGG-DARVSIHRGSFAGLGQVVAAAAVDGILLDLGVSSPQLDVAGRGFSFG 128 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 K GPLDMRM SG SA++ + A+ +++ +L GEE+Q+ RIA AIV RR P Sbjct: 129 KDGPLDMRMDPDSGQSAAEWLAHASDREIADVLWTYGEERQSRRIARAIVARRAEQPLLR 188 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T L+ LI + +++ HPATRSFQA+RI++N E+++L GL +A ALK GG L V Sbjct: 189 TAQLADLIASVMPRG-DSKTHPATRSFQAIRIYINRELDDLEAGLDAALAALKPGGRLAV 247 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +SFHSLEDR+VK+F A + + R + + Q ++ + ++ N R+R Sbjct: 248 ISFHSLEDRIVKQFMARYAKAPPSNRRLPEAQPFVPTLQLVS-GAIKADDAELNVNPRAR 306 Query: 308 SAKLRAGMR----TVERSIEDDSFVHLPRLPT 335 SA LR + E + D R T Sbjct: 307 SAVLRVAEKLGMGNGESGMGDGRSAAASRFST 338 >gi|262370681|ref|ZP_06064006.1| S-adenosylmethionine-dependent methyltransferase [Acinetobacter johnsonii SH046] gi|262314481|gb|EEY95523.1| S-adenosylmethionine-dependent methyltransferase [Acinetobacter johnsonii SH046] Length = 307 Score = 345 bits (885), Expect = 6e-93, Method: Composition-based stats. Identities = 107/308 (34%), Positives = 160/308 (51%), Gaps = 16/308 (5%) Query: 20 HVPVLLEKVIALL-NPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H+ VLL + + L + +D TFG GG++R + V D+DP A+ Sbjct: 3 HISVLLHETVDALVADRNTGIFIDGTFGRGGHTRLLLSKLDENARVYGFDKDPQALETA- 61 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F + A+F+ L+ + +G VDGV+ DLGVSS Q+D +RGFSF K GP Sbjct: 62 AILEQEDPRFKIIHASFADLKHELEVRGIGLVDGVMADLGVSSPQLDQAERGFSFMKDGP 121 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G +A+ + + L I+ GEE+ + RIA AI +TT L Sbjct: 122 LDMRMDNSKGPTAAQWLVNIEEEALANIIFQYGEERYSRRIAKAIKAA---GLIETTAQL 178 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +++ + N+ H ATR+FQA+RI +N E+E++ L A + LK G L V+SFH Sbjct: 179 AEIVKVAHPKWEKNK-HAATRTFQAIRIAINKELEDIEVFLPQAVEVLKPNGRLAVISFH 237 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDRL+K+F S + +P + +++ V + +V N RSRSA Sbjct: 238 SLEDRLIKQFIQKESTLEEDMGWGMPQQRPDTRRLKKVSR--VKASDAEVKANPRSRSAW 295 Query: 311 LRAGMRTV 318 LR R Sbjct: 296 LRVAERLA 303 >gi|158522805|ref|YP_001530675.1| S-adenosyl-methyltransferase MraW [Desulfococcus oleovorans Hxd3] gi|263446302|sp|A8ZXX1|RSMH_DESOH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|158511631|gb|ABW68598.1| S-adenosyl-methyltransferase MraW [Desulfococcus oleovorans Hxd3] Length = 312 Score = 345 bits (885), Expect = 6e-93, Method: Composition-based stats. Identities = 112/308 (36%), Positives = 172/308 (55%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H V+ ++ +ALLN GK++ D T G GG++ + +I +D+DP A++ ++ Sbjct: 5 HTSVMPDQAVALLNCEKGKIVADCTLGGGGHAVRIAEQILPEGLLIGIDKDPAALAHAKQ 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + E+ + F+ + + VDGV+ DLG+S QID RGFSF+K PL Sbjct: 65 ALSVFGERVLYVRGNFADFSEILSSLDIPAVDGVLLDLGLSFYQIDGSGRGFSFRKDEPL 124 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM ++A+D+VNQ+ DL RI GEE+ ASRIA IV+ R+SAP T+ L+ Sbjct: 125 DMRMDPDQSLTAADLVNQSAEADLVRIFREFGEERYASRIARRIVEARRSAPVTTSGQLA 184 Query: 193 SLIQKTVYFSKNN--RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 ++ + + +I PATR F ALRI VN E+E L + L + +K GG + V+SF Sbjct: 185 RIVTDAYPAKERHTAKIDPATRVFMALRIAVNTELENLERFLDTVIDRIKPGGRICVLSF 244 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK+ + + S + + +T+K +VPT E+V N +RS Sbjct: 245 HSLEDRMVKRRMKLWEKACVCPPGLPVCSCSKQRECRIVTRKALVPTAEEVQANPMARSV 304 Query: 310 KLRAGMRT 317 +LRA + Sbjct: 305 RLRAAEKV 312 >gi|78065113|ref|YP_367882.1| S-adenosyl-methyltransferase MraW [Burkholderia sp. 383] gi|88909190|sp|Q39JX8|RSMH_BURS3 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|77965858|gb|ABB07238.1| methyltransferase [Burkholderia sp. 383] Length = 313 Score = 345 bits (885), Expect = 7e-93, Method: Composition-based stats. Identities = 115/311 (36%), Positives = 176/311 (56%), Gaps = 19/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VLL++ + L P + +D TFG GG+SR+ G +IA D+DP A+ Q Sbjct: 7 HRTVLLDEAVESLVTRPDGIYVDGTFGRGGHSRAVLARLAPGGRLIAFDKDPRAIETAQ- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +FS+ +F+ ++D + +GV GV+ DLGVSS Q+D RGFSF+ GPL Sbjct: 66 --GIEDARFSIVHDSFASMRDALAARGVEKVSGVLLDLGVSSPQVDDPARGFSFRADGPL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS----APFQTT 188 DMRM + G SA++ + +A+V++LT ++ GEE+ A +IA A+V RR P TT Sbjct: 124 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDTT 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ ++ V + PATR+FQA+RI VN E+ +L L +A L+ GG L+V+ Sbjct: 184 GELAQIVGHVVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVI 242 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDVAFNRRS 306 SFHSLEDR+VK+F + + R + + + I++ P++ +VA N R+ Sbjct: 243 SFHSLEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPPLKIISR--QFPSEAEVAANPRA 300 Query: 307 RSAKLRAGMRT 317 RSA +R R Sbjct: 301 RSAVMRIAERV 311 >gi|291514761|emb|CBK63971.1| S-adenosyl-methyltransferase MraW [Alistipes shahii WAL 8301] Length = 300 Score = 345 bits (885), Expect = 7e-93, Method: Composition-based stats. Identities = 118/304 (38%), Positives = 165/304 (54%), Gaps = 16/304 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H PVLLE+ + LL P D TFG GG+SR + D+D + Sbjct: 5 HTPVLLEESVGLLAVEPAGTYADLTFGGGGHSRRILSDLGPEGRLYGFDQDRDTLEN--- 61 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 R +F ++ F L+ + +GV DG++ DLGVSS D +RGFSF+ PL Sbjct: 62 --RPDDARFHYVESNFRFLRGALRLRGVTEVDGILADLGVSSHHFDAVERGFSFRGEAPL 119 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ G ++A+DVVN +DLTRILG GE + ++A+ +VK R +AP TT L Sbjct: 120 DMRMNQRGRLTAADVVNDYTAEDLTRILGDWGEVETPWKVANCLVKARAAAPVTTTAQLV 179 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++ K + T+ FQALRI VN E+E L L + + LK GG L+V+S+HS Sbjct: 180 GAVKPCTP--KKDEAKFLTKLFQALRIEVNGEMEALKMALEQSLRVLKPGGRLVVISYHS 237 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDRLVK F S + + + P F +T+K V P+ E++ N RSRSAKLR Sbjct: 238 LEDRLVKNFMRSGNFSGQVEKDFFGRSQAP--FDLVTRKAVTPSAEELDRNPRSRSAKLR 295 Query: 313 AGMR 316 A ++ Sbjct: 296 AAVK 299 >gi|289663644|ref|ZP_06485225.1| S-adenosyl-methyltransferase MraW [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 352 Score = 345 bits (885), Expect = 8e-93, Method: Composition-based stats. Identities = 121/332 (36%), Positives = 181/332 (54%), Gaps = 11/332 (3%) Query: 12 AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDP 68 + + HVPVL +V+ L LD TFG GG++R + G ++ +D+DP Sbjct: 10 PVSQSPAAHVPVLYTQVLDGLQVTDNGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDP 69 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 A++ ++T + S+ + +F+ L V VDG++ DLGVSS Q+D RGFSF Sbjct: 70 EAIAVAEQTFGG-DARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLDVAGRGFSFG 128 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 K GPLDMRM SG SA++ + A+ +++ +L GEE+Q+ RIA AIV RR P Sbjct: 129 KDGPLDMRMDPDSGQSAAEWLAHASDREIADVLWTYGEERQSRRIARAIVARRAEQPLLR 188 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T L+ LI + +++ HPATRSFQA+RI++N E+++L GL +A ALK GG L V Sbjct: 189 TAQLADLIASVMPRG-DSKTHPATRSFQAIRIYINRELDDLEAGLDAALAALKPGGRLAV 247 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +SFHSLEDR+VK+F A + + R + + Q ++ + ++ N R+R Sbjct: 248 ISFHSLEDRIVKQFMARYAKAPPSNRRLPEAQPFVPTLQLVS-GAIKADDAELNVNPRAR 306 Query: 308 SAKLRAGMR----TVERSIEDDSFVHLPRLPT 335 SA LR + E + D R T Sbjct: 307 SAVLRVAEKLGMGNGESGMGDGRSAAASRFST 338 >gi|54310311|ref|YP_131331.1| S-adenosyl-methyltransferase MraW [Photobacterium profundum SS9] gi|50402223|sp|P62475|RSMH_PHOPR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|46914752|emb|CAG21529.1| putative S-adenosylmethionine-dependent methyltransferaseinvolved in cell envelope biogenesis [Photobacterium profundum SS9] Length = 315 Score = 344 bits (884), Expect = 8e-93, Method: Composition-based stats. Identities = 115/313 (36%), Positives = 172/313 (54%), Gaps = 19/313 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 +H+ VLL + + L P + +D TFG GG+SR + +DRDP A++ Q Sbjct: 6 EHISVLLHESVDGLAIKPDGIYIDGTFGRGGHSRLILSHLGENGRLYGIDRDPQAIAEAQ 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +FS+ FS + Y+ ++ VDGV+ DLGVSS Q+D +RGFSF + G Sbjct: 66 TI---DDPRFSIIHGPFSGMAQYMEERDLIGRVDGVLLDLGVSSPQLDDAERGFSFMRDG 122 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ---SAPFQT 187 PLDMRM SGISA++ + +A D+ +L GEE+ A RIA IV+ R+ P Sbjct: 123 PLDMRMDPTSGISAAEWLAEAEADDIAWVLKEFGEERFAKRIARGIVEHRENPDKKPLTR 182 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T++L++LI F ++ HPATRSFQA+RI++N+E++E+ L A K L G L V Sbjct: 183 TKELAALISDVSPF-RDKHKHPATRSFQAIRIYINSELDEIETALNGAVKVLAPQGRLSV 241 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVVVPTQEDVAFN 303 +SFHSLEDR+VK+F S + + K + P+++++ N Sbjct: 242 ISFHSLEDRMVKRFIRKNSKGPEVPAGFPLTEDQIKALGSADLKMASKAIKPSKDELGDN 301 Query: 304 RRSRSAKLRAGMR 316 +R+RS+ LR R Sbjct: 302 KRARSSVLRLAER 314 >gi|67925208|ref|ZP_00518575.1| methyltransferase [Crocosphaera watsonii WH 8501] gi|67852944|gb|EAM48336.1| methyltransferase [Crocosphaera watsonii WH 8501] Length = 292 Score = 344 bits (884), Expect = 8e-93, Method: Composition-based stats. Identities = 109/302 (36%), Positives = 160/302 (52%), Gaps = 27/302 (8%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCGQET 77 H PVL + ++ L P LDAT G GG+SR +V +D D A++ Q Sbjct: 8 HTPVLPQALLDGLAIDPNGHYLDATLGRGGHSRLILATFPDVRVTGIDLDDEAIATTQGN 67 Query: 78 MRD-YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + + + ++ ++Q F+ + + +G++ DLGVSS Q D +RGFSF+ PLDMR Sbjct: 68 LSELFGDRLQVWQGNFADYSGKIGE--FNGIIADLGVSSPQFDVAERGFSFRHQAPLDMR 125 Query: 137 MS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M+ ++A++++N + L + GEE+++ IA IV++R PF+TT L+ I Sbjct: 126 MNRQQSLTAAEIINHWDQTSLADLFYQYGEERRSRVIARRIVQQR---PFETTTALAEAI 182 Query: 196 QKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 + RIHPATR FQALRI VN+E+ L + L A LK GG + ++SFHSLE Sbjct: 183 ALCFPPKQRYGRIHPATRVFQALRIAVNDELGSLERFLEKAPHWLKPGGRIGIISFHSLE 242 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 DR VK F + +TKK ++P E+ A N RSRSAKLR Sbjct: 243 DRRVKYSFRDS-----------------LLLDVVTKKPIIPQAEEQANNPRSRSAKLRFA 285 Query: 315 MR 316 R Sbjct: 286 QR 287 >gi|159038986|ref|YP_001538239.1| S-adenosyl-methyltransferase MraW [Salinispora arenicola CNS-205] gi|262826354|sp|A8LX88|RSMH_SALAI RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|157917821|gb|ABV99248.1| S-adenosyl-methyltransferase MraW [Salinispora arenicola CNS-205] Length = 372 Score = 344 bits (884), Expect = 9e-93, Method: Composition-based stats. Identities = 121/319 (37%), Positives = 181/319 (56%), Gaps = 11/319 (3%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGK----VILDATFGAGGYSRSFCKMGSN--VI 62 M + G HVPVLLE+ + LL PA G+ V +DAT G GG++ + ++ Sbjct: 1 MGVDMGELRGAHVPVLLERCLELLAPALGRAGRTVYVDATLGLGGHAEAVLATHPQTMLV 60 Query: 63 ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQID 119 LDRD A++ + + + ++ L A + +L D + G VDG++FDLGVSS+Q+D Sbjct: 61 GLDRDTEALAHARVRLARFADRVHLEHAVYDELPDVLDRLGHPVVDGILFDLGVSSLQLD 120 Query: 120 CGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178 DRGF++ + PLDMRM + G++A +VVN DL R+L + GEEK A RIA AIV+ Sbjct: 121 APDRGFAYAQDAPLDMRMDQTRGLTAEEVVNTYPHPDLARVLRVYGEEKFAPRIASAIVR 180 Query: 179 RRQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 R+ P ++ L+ L+++T+ ++ HPA R+FQALRI VN E+ L L +A Sbjct: 181 ERERDPITSSARLAELVRQTIPAPARRTGGHPAKRTFQALRIEVNRELAALETALPAALD 240 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297 L G L+V+S+HSLEDRL K A R V + F+ +++ +P + Sbjct: 241 RLTIEGRLVVLSYHSLEDRLTKVALADRVRSKGPVDLPVELPGTGPTFRLLSRGAELPGE 300 Query: 298 EDVAFNRRSRSAKLRAGMR 316 +VA N R+ S +LRA R Sbjct: 301 AEVAMNPRAASVRLRAAER 319 >gi|90413032|ref|ZP_01221030.1| putative S-adenosylmethionine-dependent methyltransferaseinvolvedin cell envelope biogenesis [Photobacterium profundum 3TCK] gi|90326047|gb|EAS42486.1| putative S-adenosylmethionine-dependent methyltransferaseinvolvedin cell envelope biogenesis [Photobacterium profundum 3TCK] Length = 315 Score = 344 bits (884), Expect = 9e-93, Method: Composition-based stats. Identities = 116/313 (37%), Positives = 172/313 (54%), Gaps = 19/313 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 +H+ VLL + + L P + +D TFG GG+SR + +DRDP A++ Q Sbjct: 6 EHISVLLHESVDGLAIKPDGIYIDGTFGRGGHSRLILSHLGENGRLYGIDRDPQAIAEAQ 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +FS+ FS + Y+ ++ VDGV+ DLGVSS Q+D +RGFSF + G Sbjct: 66 SI---DDPRFSIIHGPFSGMAQYMEERDLIGRVDGVLLDLGVSSPQLDDAERGFSFMRDG 122 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ---SAPFQT 187 PLDMRM SGISA++ + +A D+ +L GEE+ A RIA IV+ R+ AP Sbjct: 123 PLDMRMDPTSGISAAEWLAEAEADDIAWVLKEFGEERFAKRIARGIVEHRENPDKAPLTR 182 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T +L++LI F ++ HPATRSFQA+RI++N+E++E+ L A K L G L V Sbjct: 183 TTELAALISNVSPF-RDKHKHPATRSFQAIRIYINSELDEIETALNGAVKVLAPQGRLSV 241 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVVVPTQEDVAFN 303 +SFHSLEDR+VK+F S + + K + P+++++ N Sbjct: 242 ISFHSLEDRMVKRFIRKNSKGPEVPAGFPLTEDQIKALGSADLKMASKAIKPSKDELGDN 301 Query: 304 RRSRSAKLRAGMR 316 +R+RS+ LR R Sbjct: 302 KRARSSVLRLAER 314 >gi|116511689|ref|YP_808905.1| SAM-dependent methyltransferase for cell envelope biogenesis [Lactococcus lactis subsp. cremoris SK11] gi|116107343|gb|ABJ72483.1| SAM-dependent methyltransferase for cell envelope biogenesis [Lactococcus lactis subsp. cremoris SK11] gi|300071267|gb|ADJ60667.1| S-adenosyl-methyltransferase MraW [Lactococcus lactis subsp. cremoris NZ9000] Length = 298 Score = 344 bits (884), Expect = 9e-93, Method: Composition-based stats. Identities = 97/295 (32%), Positives = 158/295 (53%), Gaps = 9/295 (3%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMRD--YKEQFS 86 +L P + +DAT G G+S ++ + D+D A + + + + +++ + Sbjct: 1 MLEVKPNGIYVDATLGGAGHSEYLLSKLTTGHLYSFDQDETAHANAKVRLSEQLAEDKVT 60 Query: 87 LFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSG-I 142 L ++ F L+ + + +DG+++DLGVSS Q D RGFS++K LDMRM S + Sbjct: 61 LIKSNFRNLKSALAELDITKIDGILYDLGVSSPQFDDSQRGFSYKKEARLDMRMDQSQTL 120 Query: 143 SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS 202 SA +VVN + L RI GE+K + +IA I + R+ P +TT +L+ LI+ + Sbjct: 121 SAYEVVNDYPYEALVRIFFRYGEDKFSKQIARKIEQSRKIKPIETTIELADLIKSALPQK 180 Query: 203 K-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKF 261 + + HPA R FQA+RI VN+E+ + + A LK G + V++FHSLEDRL K Sbjct: 181 ELKKKGHPAKRIFQAIRIEVNDELGAAEESIEQAIDLLKVDGRISVITFHSLEDRLTKSI 240 Query: 262 FASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 F S + + A + I +K V+ ++E++ FN R+ SAKLR + Sbjct: 241 FKEYSTVNVPKGLPMLPKEMEAKLKLINRKPVLASEEELEFNNRAHSAKLRVAQK 295 >gi|284045229|ref|YP_003395569.1| S-adenosyl-methyltransferase MraW [Conexibacter woesei DSM 14684] gi|283949450|gb|ADB52194.1| S-adenosyl-methyltransferase MraW [Conexibacter woesei DSM 14684] Length = 314 Score = 344 bits (884), Expect = 9e-93, Method: Composition-based stats. Identities = 119/313 (38%), Positives = 176/313 (56%), Gaps = 8/313 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73 G H+PVL ++I LL+P PG+V++D T G GG++R +I +DRDP A Sbjct: 2 TGIHIPVLAGELIELLDPQPGQVVVDCTLGGGGHARLVAGRIGPTGTLIGIDRDPIAEER 61 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGV--DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E + +A F+Q + + +GV D V DLG+SSMQ+D +RGFS+ Sbjct: 62 FAELTAEVSCTTRFIRADFAQGLEQLAREGVQADLVYMDLGMSSMQVDTWERGFSYAYDA 121 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM ++A +VVN + + L R+L GEE+ AS+IA AI + R+ P +TTQ Sbjct: 122 PLDMRMDSEQELTAHEVVNGWDERRLARLLKEYGEERYASKIARAIARTREQQPIETTQA 181 Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I+ + ++ HPA R+FQA+RI VN E+E++ GL A L GG L +S Sbjct: 182 LVDVIKSAIPIPAQFGGGHPAKRTFQAIRIAVNEELEQIDDGLPFAWDVLAPGGRLAAIS 241 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR VK+F R+ + I + + +T++ + PT +VA N R++S Sbjct: 242 FHSLEDRRVKRFLVDRARGCICPPDLPICACGRTPEGELLTRRAIAPTAGEVAHNPRAKS 301 Query: 309 AKLRAGMRTVERS 321 A LR ++ E S Sbjct: 302 AHLRGALKLKEMS 314 >gi|152980341|ref|YP_001354713.1| S-adenosyl-methyltransferase MraW [Janthinobacterium sp. Marseille] gi|263456176|sp|A6T2G6|RSMH_JANMA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|151280418|gb|ABR88828.1| S-adenosyl-methyltransferase [Janthinobacterium sp. Marseille] Length = 322 Score = 344 bits (884), Expect = 1e-92, Method: Composition-based stats. Identities = 108/315 (34%), Positives = 175/315 (55%), Gaps = 18/315 (5%) Query: 20 HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73 H VLL++ + L V +D TFG GG+SR + G+ ++A D+D A++ Sbjct: 11 HRTVLLDEAVDALALGGERANGVYVDGTFGRGGHSRKILQQLGSGARLLAFDKDTQAIAN 70 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 ++F + +F+ L + + +G VDGV+ DLG+SS Q+D RGFSF+ Sbjct: 71 AATI---DDQRFEIAHDSFATLSEALAVRGIKQVDGVLLDLGISSPQVDDATRGFSFRAD 127 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 GPLDMRM + G+SA++ + + + +++ GEE+ A +IA AIV RR P +T+ Sbjct: 128 GPLDMRMDTTRGMSAAEWLATETEQKIEKVIREYGEERFAFQIAKAIVARRAVEPISSTR 187 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ ++ +TV + PATR+FQA+RIF+N E+EEL L A + L G L+V+S Sbjct: 188 QLAEIVARTVKT-REKGKDPATRTFQAIRIFINQELEELEVVLNEAYRYLAPHGRLVVIS 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 FHSLEDR+VK+F A ++ R + + + +++ V P+ +++ N R+R Sbjct: 247 FHSLEDRIVKQFMAGKANVPQPDRRLPIRAIDLPQPEMKLLSR--VKPSAAEISENPRAR 304 Query: 308 SAKLRAGMRTVERSI 322 SA +R R + Sbjct: 305 SAVMRVAERLSPAAR 319 >gi|254797245|ref|YP_003082087.1| S-adenosyl-methyltransferase MraW [Neorickettsia risticii str. Illinois] gi|254590494|gb|ACT69856.1| S-adenosyl-methyltransferase MraW [Neorickettsia risticii str. Illinois] Length = 296 Score = 344 bits (884), Expect = 1e-92, Method: Composition-based stats. Identities = 122/300 (40%), Positives = 171/300 (57%), Gaps = 18/300 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETM 78 H PVLL + + L P G V +DATFGAGGY+R+ V A+DRD Q Sbjct: 13 HKPVLLSEALKFLAPKNGAVYVDATFGAGGYTRAILSSVDCFVYAIDRDETVKRFFQLIE 72 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138 D+ ++ + A F ++ + + VDG+VFDLGVS+MQ+ DRGFSF GPLDMRM Sbjct: 73 SDFPKRTTFINANFVDIEALLGEVKVDGIVFDLGVSTMQLKVADRGFSFLHEGPLDMRMD 132 Query: 139 CSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK 197 + ++A +VN + I+ GEE+ + +IAHAIV R+ TT L+ +++ Sbjct: 133 RNTILTAETIVNSYTEVKIASIIYQFGEERMSRKIAHAIVDARRKKRITTTSSLAEIVRS 192 Query: 198 TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRL 257 + +I PAT++FQALRIFVN+E+ L GLR+A LK GG +VVSFHSLEDR+ Sbjct: 193 CFP-KRYYKIDPATKTFQALRIFVNDELGALECGLRTALTMLKVGGRAVVVSFHSLEDRI 251 Query: 258 VKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 VK F S G F +TKK+VVP++++V N SRSA++R + Sbjct: 252 VKHLFRSVHGNG---------------FNLLTKKIVVPSRDEVRENPSSRSARMRVIEKV 296 >gi|195997843|ref|XP_002108790.1| hypothetical protein TRIADDRAFT_19892 [Trichoplax adhaerens] gi|190589566|gb|EDV29588.1| hypothetical protein TRIADDRAFT_19892 [Trichoplax adhaerens] Length = 378 Score = 344 bits (883), Expect = 1e-92, Method: Composition-based stats. Identities = 132/344 (38%), Positives = 197/344 (57%), Gaps = 42/344 (12%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAV 71 H ++ H PVLL+ V+ LL PA G+ +DATFG GG++ + K ++ + A+D DP A+ Sbjct: 25 HCSVLKHQPVLLDTVVKLLAPANGQSYIDATFGGGGHTSAILKAATDCQIYAIDTDPLAI 84 Query: 72 SCGQETMR---DYKEQFSLFQATFSQL------QDYVPDKGVDGVVFDLGVSSMQIDCGD 122 + ++ ++ ++ + Q F Q+ Q+ +P +DG++FDLG+SSMQID Sbjct: 85 ARAKQLASTTSNWIQRLKVVQCRFGQMENKLLAQEKLPPNSMDGIIFDLGMSSMQIDDPL 144 Query: 123 RGFSFQKSGPLDMRMSCSG---------ISASDVVNQANVKDLTRILGILGEEKQASRIA 173 RGFSFQ SGPLDMRM + I+A+ V+N + +DL +L GEE++A IA Sbjct: 145 RGFSFQSSGPLDMRMDATSDEIGKHQHRITAAHVINNIDKEDLADVLWNYGEERKARAIA 204 Query: 174 HAIVKRRQSAPFQTTQDLSSLIQKTVYF--SKNNRIHPATRSFQALRIFVNNEIEELAQG 231 AI+K R+ P TT L +I + + K+ +IHPATR+FQA+RI +N+E+ +L QG Sbjct: 205 TAIIKARKKQPITTTDHLVDIIDRQFPYKYRKDGQIHPATRTFQAIRILINDELWQLVQG 264 Query: 232 LRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH---------- 281 L + + LK GG LIV+SFHSLEDR+VKKFF R S+ Sbjct: 265 LNACKALLKNGGRLIVISFHSLEDRIVKKFFNGEDRPDFTSRSSPTSSKQYARLSEEGKS 324 Query: 282 ----------PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 + ++ I KK + P+ E++A N R+RSAKLR + Sbjct: 325 KIESKSIIKRNSPWKLICKKPIYPSPEEIAHNSRARSAKLRCAI 368 >gi|282897735|ref|ZP_06305734.1| methyltransferase [Raphidiopsis brookii D9] gi|281197414|gb|EFA72311.1| methyltransferase [Raphidiopsis brookii D9] Length = 305 Score = 344 bits (883), Expect = 1e-92, Method: Composition-based stats. Identities = 111/312 (35%), Positives = 164/312 (52%), Gaps = 26/312 (8%) Query: 11 SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDP 68 + ++ H+PVL E++I LN G LD T G GG+SR + N V+A+D+D Sbjct: 15 TPLNQVPFSHIPVLGEELIRGLNIQAGGNYLDLTVGGGGHSRLILQAADNTKVMAVDQDL 74 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 AV + + ++ ++ F P DG++ DLGVSS +D +RGFSF+ Sbjct: 75 DAVIAAKTRLSEFGDRVDFLHTNFVNFP--FPPNTYDGILADLGVSSYHLDNPERGFSFR 132 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + LDMRM+ I+A+D+VN + ++LT I GEE+ + +IA I++ R PF T Sbjct: 133 HTANLDMRMNQQQSITAADIVNGWDEQELTHIFFEYGEERLSRKIARRIIENR---PFST 189 Query: 188 TQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T L+ I V + RIHPATR FQALR+ VN+E++ L L A +L GG + Sbjct: 190 TTQLAESISSCVPPKYRYGRIHPATRVFQALRLAVNDELQVLETLLHKAPPSLVPGGKIA 249 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 ++SFHSLEDR+VK + + +TKK + T ++ N RS Sbjct: 250 LISFHSLEDRIVKHGLRNSD-----------------LLTVMTKKPITATDPEIQHNPRS 292 Query: 307 RSAKLRAGMRTV 318 RSAKLR + Sbjct: 293 RSAKLRIAQKVA 304 >gi|209519087|ref|ZP_03267893.1| S-adenosyl-methyltransferase MraW [Burkholderia sp. H160] gi|209500459|gb|EEA00509.1| S-adenosyl-methyltransferase MraW [Burkholderia sp. H160] Length = 317 Score = 344 bits (883), Expect = 1e-92, Method: Composition-based stats. Identities = 115/323 (35%), Positives = 178/323 (55%), Gaps = 20/323 (6%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 M+ A+ + + H VLL + + L +D TFG GG+SR + +IA D Sbjct: 1 MAPAMGNELQ-HRTVLLNEAVDALVTRTDGTYVDGTFGRGGHSRLVLERLGEAGRLIAFD 59 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGD 122 +DP A++ Q+ +F++ +F+ L+ + ++GV GV+ DLGVSS Q+D + Sbjct: 60 KDPLAIATAQKIA---DSRFAIVHESFASLRAAMAERGVGRVSGVLLDLGVSSPQVDDPE 116 Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF+ GPLDMRM + G SA+D + +A V++LT ++ GEE+ A +IA A+V RR Sbjct: 117 RGFSFRADGPLDMRMDPTRGESAADWLARATVQELTEVIRDYGEERFAFQIAKALVARRA 176 Query: 182 S----APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 P +T +L+ ++ V + PATR+FQA+RI VN E+ EL L +A Sbjct: 177 ESDRLGPLVSTGELAQIVANVVKT-REKGKDPATRTFQAIRIHVNQELAELQVVLEAALS 235 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVP 295 L+ GG L+V+SFHSLEDR+VK+F + + R + + + I + V Sbjct: 236 LLEQGGRLVVISFHSLEDRIVKRFMQAHASTPAVDRRLPIRAVDLPSPPLKIIGR--VFA 293 Query: 296 TQEDVAFNRRSRSAKLRAGMRTV 318 + +VA N R+RSA +R R Sbjct: 294 SDAEVADNPRARSAVMRVAERIA 316 >gi|88608489|ref|YP_506785.1| S-adenosyl-methyltransferase MraW [Neorickettsia sennetsu str. Miyayama] gi|123491328|sp|Q2GCL1|RSMH_NEOSM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|88600658|gb|ABD46126.1| S-adenosyl-methyltransferase MraW [Neorickettsia sennetsu str. Miyayama] Length = 296 Score = 344 bits (883), Expect = 1e-92, Method: Composition-based stats. Identities = 121/300 (40%), Positives = 168/300 (56%), Gaps = 18/300 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETM 78 H PVLL + + L P G V +DATFGAGGY+R+ V A+DRD Q Sbjct: 13 HKPVLLSEALKFLAPKNGGVYVDATFGAGGYTRAILSSVDCFVYAIDRDETVRRFFQVIE 72 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138 D+ ++ + F + + + VDG+VFDLGVS+MQ+ DRGFSF GPLDMRM Sbjct: 73 NDFPKRTNFINGNFVDIGSLLGEVKVDGIVFDLGVSTMQLKVADRGFSFLHEGPLDMRMD 132 Query: 139 CSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK 197 S + +A VVN + I+ GEE+ + +IAHAIV R+ TT L+ +++ Sbjct: 133 RSTLLTAETVVNSYTEVKIASIIYQFGEERMSRKIAHAIVNARRKKRITTTSSLAEIVRS 192 Query: 198 TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRL 257 + +I PAT++FQALRIF+N+E+ L GLR+A LK G +VVSFHSLEDR+ Sbjct: 193 CFP-KRYYKIDPATKTFQALRIFINDELGALECGLRTALTMLKVGSRAVVVSFHSLEDRI 251 Query: 258 VKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 VK F S G F +TKK+VVP++++V N SRSA++R + Sbjct: 252 VKHLFRSVHGNG---------------FNLLTKKIVVPSRDEVRENPSSRSARMRVIEKV 296 >gi|113478175|ref|YP_724236.1| S-adenosyl-methyltransferase MraW [Trichodesmium erythraeum IMS101] gi|123351672|sp|Q10VG1|RSMH_TRIEI RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|110169223|gb|ABG53763.1| S-adenosyl-methyltransferase MraW [Trichodesmium erythraeum IMS101] Length = 283 Score = 344 bits (883), Expect = 1e-92, Method: Composition-based stats. Identities = 108/302 (35%), Positives = 163/302 (53%), Gaps = 26/302 (8%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQE 76 +H+PVL ++I+ L P + LDAT G GG+++ V+A+D+D A+ Q Sbjct: 2 NHIPVLSSELISGLVIRPRGLYLDATLGFGGHTKLILAAAPEVKVVAIDQDKQALDSSQT 61 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + Y + F+ + DG++ DLG++S+Q+D +RGFSF+ G LDMR Sbjct: 62 LLASYNSNIQFCHSNFADYDP--QNLKFDGILADLGINSVQLDTPERGFSFRHQGKLDMR 119 Query: 137 MSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M+ I+A+ ++N L I GEE+ + RIA I++ R P +TT +L+ ++ Sbjct: 120 MNQQQTITAAKIINHWEEVKLANIFYTYGEERLSRRIARKIIESR---PLETTTELAEVV 176 Query: 196 QKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 V + + RIHPATR FQALRI VN E+ L L++A LK GG + ++SFHSLE Sbjct: 177 ANCVPYKYRYGRIHPATRVFQALRIEVNQELSRLETFLKNAPHWLKIGGRIGIISFHSLE 236 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 DRLVK + S + + +TKK + P +VA N R+RSAKLR Sbjct: 237 DRLVKHSLRNAS-----------------ILKVLTKKPIQPQDNEVAINPRARSAKLRLA 279 Query: 315 MR 316 + Sbjct: 280 EK 281 >gi|320011279|gb|ADW06129.1| S-adenosyl-methyltransferase MraW [Streptomyces flavogriseus ATCC 33331] Length = 321 Score = 344 bits (883), Expect = 1e-92, Method: Composition-based stats. Identities = 121/316 (38%), Positives = 182/316 (57%), Gaps = 13/316 (4%) Query: 20 HVPVLLEKVIALLNPAPGK------VILDATFGAGGYSRSFCKMGS--NVIALDRDPFAV 71 HVPV+L++ + LL PA V++D T G GG+S + ++ALDRD A+ Sbjct: 6 HVPVMLQRCLDLLAPALEATGPQPPVVVDCTLGLGGHSEALLAAFPAARLVALDRDKEAL 65 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQ 128 E + Y ++ +L A + +L + + G V GV+FDLGVSSMQ+D DRGF++ Sbjct: 66 RLSGERLAPYGDRATLVHAVYDELPEVLDRLGIPKVQGVLFDLGVSSMQLDEADRGFAYA 125 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + PLDMRM + GI A++V+N +L RIL GEEKQA RI A+V+ R+ PF Sbjct: 126 QDAPLDMRMDQTTGIGAAEVLNTYPPGELVRILRAYGEEKQAKRIVSAVVREREKEPFSN 185 Query: 188 TQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 + L LI+ ++ +K +PA R+FQALRI VN E+ L + + +A ++L GG + Sbjct: 186 SARLVELIRDSLPQAAKRTGGNPAKRTFQALRIEVNGELTVLERAVPAAVRSLAVGGRIA 245 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+S+HSLEDRLVK+ FA+ + + + + +T+ +PT+E+VA NRR+ Sbjct: 246 VLSYHSLEDRLVKQVFAAGAANTAPPGLPVVPERYQPRLKLLTRGAELPTEEEVAENRRA 305 Query: 307 RSAKLRAGMRTVERSI 322 A+LR R E Sbjct: 306 APARLRGAQRIREEER 321 >gi|21672883|ref|NP_660948.1| hypothetical protein CT0042 [Chlorobium tepidum TLS] gi|25090698|sp|Q8KGC6|RSMH_CHLTE RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|21645935|gb|AAM71290.1| conserved hypothetical protein [Chlorobium tepidum TLS] Length = 318 Score = 344 bits (883), Expect = 1e-92, Method: Composition-based stats. Identities = 108/313 (34%), Positives = 168/313 (53%), Gaps = 18/313 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV------IALDRDPFAVSC 73 H PVL + ++LL P + +D T G GG+S + + + +D+D A+ Sbjct: 7 HEPVLARESVSLLVTLP-GIYIDGTLGGGGHSLQLLRHLQTLNGDSLLVGIDQDTHALEA 65 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDK--------GVDGVVFDLGVSSMQIDCGDRGF 125 + + ++ ++ L + F +++ V V G + DLGVSS QID +RGF Sbjct: 66 AGKKLGEFGDRRRLVRGNFGMVKELVEPMMRGAGNGLPVMGFLLDLGVSSFQIDTPERGF 125 Query: 126 SFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 S+ K GPLDMRM G ++A+D+VN L ++ GEE RIA AIV R SAP Sbjct: 126 SYLKDGPLDMRMDPDGPLTAADIVNGYEEAALAKLFFRYGEEPLGGRIARAIVSARSSAP 185 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 TT +L+ +I+ K+ I +R +QALRI VN+E+ L Q L + L +GG Sbjct: 186 LTTTGELAEVIRAACP-RKDLAIKTLSRIYQALRIEVNDELGVLEQALEDGFELLSSGGR 244 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFN 303 V+S+HSLEDR+VK+FFA+++ + + + PA + +K + T E+++ N Sbjct: 245 FAVISYHSLEDRIVKRFFAAKTSADWGPKGLALREPLKPAEAVLVVRKPLEATAEEISRN 304 Query: 304 RRSRSAKLRAGMR 316 RSRSA+LR + Sbjct: 305 PRSRSARLRVIQK 317 >gi|91785301|ref|YP_560507.1| S-adenosyl-methyltransferase MraW [Burkholderia xenovorans LB400] gi|122970134|sp|Q13TY4|RSMH_BURXL RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|91689255|gb|ABE32455.1| S-adenosyl-methyltransferase, cell division cytoplasmic protein, MraW [Burkholderia xenovorans LB400] Length = 317 Score = 344 bits (882), Expect = 1e-92, Method: Composition-based stats. Identities = 116/323 (35%), Positives = 179/323 (55%), Gaps = 20/323 (6%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 M+ A+ + + H VLLE+ + L V +D TFG GG+SR + +IA D Sbjct: 1 MAPAMGNELQ-HRTVLLEEAVQALVTRADGVYVDGTFGRGGHSRLVLEKLGESGRLIAFD 59 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGD 122 +DP A++ Q+ +F + +F+ L+ + ++GV GV+ DLGVSS Q+D + Sbjct: 60 KDPLAIATAQQI---TDPRFGIVHESFASLRTAMAERGVGRVSGVLLDLGVSSPQVDDPE 116 Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF+ GPLDMRM + G SA+D + +A V++LT ++ GEE+ A +IA A+V RR Sbjct: 117 RGFSFRADGPLDMRMDPTRGESAADWLARATVQELTEVIRDYGEERFAFQIAKALVARRA 176 Query: 182 S----APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 P +T +L+ ++ V + PATR+FQA+RI +N E+ EL L +A Sbjct: 177 ESDRLGPLVSTGELAQIVANVVKT-REKGKDPATRTFQAIRIHINQELAELQVVLEAALS 235 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVP 295 L+ GG L+V+SFHSLEDR+VK+F + + R + + + I + V Sbjct: 236 LLEQGGRLVVISFHSLEDRIVKRFMQAHASTPAVDRRLPIRAVDLPSPPLKIIGR--VFA 293 Query: 296 TQEDVAFNRRSRSAKLRAGMRTV 318 + +VA N R+RSA +R R Sbjct: 294 SDAEVAANPRARSAVMRVAERIA 316 >gi|74316129|ref|YP_313869.1| methyltransferase [Thiobacillus denitrificans ATCC 25259] gi|88909225|sp|Q3SMI1|RSMH_THIDA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|74055624|gb|AAZ96064.1| methyltransferase [Thiobacillus denitrificans ATCC 25259] Length = 311 Score = 344 bits (882), Expect = 1e-92, Method: Composition-based stats. Identities = 125/308 (40%), Positives = 176/308 (57%), Gaps = 12/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 HVPVL ++ +A L P V +DATFG GG+SR ++ALDRDP A++ G Sbjct: 5 HVPVLAQEAVAALAIKPEGVYVDATFGRGGHSRMILARLGTLGRLVALDRDPAAIAAGAA 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + +L Q+ FS+L + G VDG++ D+GVSS Q+D RGFSF+ PL Sbjct: 65 L---DDPRLTLRQSEFSRLGKVLDALGIARVDGILLDIGVSSPQLDDAARGFSFRFDAPL 121 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM SGISA+D + A ++++ ++ GEE+ A IA A+V RQ +T L+ Sbjct: 122 DMRMDPGSGISAADWLATAEEEEISEVIRTYGEERFAKPIARALVAARQKEAITSTAQLA 181 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I V + + HPATRSFQA+RI++N E+EEL L + L+AGG L V+SFHS Sbjct: 182 GIIAAAVKKREPGQ-HPATRSFQAIRIYLNRELEELKAVLPQCVERLRAGGRLAVISFHS 240 Query: 253 LEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK+F + S G+ R IP+ A + + + +VA N R+RSA L Sbjct: 241 LEDRIVKRFLRTESLGEQAPPRLPIPAAMLKAGRLRLVGRAQHASDAEVAANPRARSAVL 300 Query: 312 RAGMRTVE 319 R R E Sbjct: 301 RVAERVAE 308 >gi|262831574|sp|A1TAX6|RSMH_MYCVP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 324 Score = 344 bits (882), Expect = 2e-92, Method: Composition-based stats. Identities = 115/316 (36%), Positives = 176/316 (55%), Gaps = 17/316 (5%) Query: 19 DHVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDP 68 H+PVLL++ + LL PA G ++DAT GAGG+S F +I LDRDP Sbjct: 6 PHIPVLLDRCVELLAPALTRTSTDGSGATLVDATLGAGGHSERFLTQFPALRLIGLDRDP 65 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD-----KGVDGVVFDLGVSSMQIDCGDR 123 A+ + + + ++ +L + + + V + GVD ++FDLGVSSMQ+D +R Sbjct: 66 DALHIAGDRLARFGDRVTLVRTRYDGIAAAVAESNCAATGVDAILFDLGVSSMQLDRVER 125 Query: 124 GFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GF++ PLDMRM S ++A+ V+N + K L R+L + GEEK A RIA IV+RR + Sbjct: 126 GFAYSVDAPLDMRMDSGSDLTAAQVLNTYDEKALARVLRVYGEEKFAGRIAAQIVRRRAN 185 Query: 183 APFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 PF TT +L L+ + + ++ HPA R+FQALRI VN E+E L + +A + L+ Sbjct: 186 TPFSTTGELVELLYQAIPAPARRTGGHPAKRTFQALRIEVNAELESLRLAIPAALEVLRP 245 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 G + V+++ SLEDR+VK FA+ + + H F ++T+ E++ Sbjct: 246 HGRIAVMAYQSLEDRIVKTEFAAATASRTPPGLPVELPGHGPRFVALTRGAERADAEEIE 305 Query: 302 FNRRSRSAKLRAGMRT 317 N RS S +LRA + Sbjct: 306 RNPRSASVRLRALEKV 321 >gi|86608801|ref|YP_477563.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. JA-2-3B'a(2-13)] gi|123502541|sp|Q2JLV1|RSMH_SYNJB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|86557343|gb|ABD02300.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. JA-2-3B'a(2-13)] Length = 319 Score = 344 bits (882), Expect = 2e-92, Method: Composition-based stats. Identities = 126/317 (39%), Positives = 165/317 (52%), Gaps = 39/317 (12%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQ 75 + H VL E+V+A L P G + LD T G GG+S + + G+ V+ LDRDP A+ Q Sbjct: 21 VYQHDSVLTEEVMAYLQPQGGGIFLDVTLGGGGHSLALLRGGAARVVGLDRDPAALQAAQ 80 Query: 76 ETMRD---YKEQFSLFQATFSQLQDYVPDKGV----------DGVVFDLGVSSMQIDCGD 122 + L+ F+ + G DG+V DLGVSS Q+DC + Sbjct: 81 ARFAAEGIPGSRIQLWHLNFADFD--LQQHGFRDEQGQGIPFDGIVADLGVSSPQLDCPE 138 Query: 123 RGFSFQKSGPLDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 RGFSF+ GPLDMRM S +A+D VN V++L I GEE+ A RIAH I + R Sbjct: 139 RGFSFRGEGPLDMRMDPSAAQETAADWVNHRPVEELIEIFTRYGEERFARRIAHHIEQAR 198 Query: 181 QSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 P TT L+ ++ + V + + RIHPATR FQALRI VN E+E L L A L Sbjct: 199 ---PLATTTQLAQVVWQAVPPAARRGRIHPATRVFQALRIAVNRELEALETLLAQAPTWL 255 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 K GG L V+SFHSLEDRLVK F +Q +T K + P++ + Sbjct: 256 KPGGRLAVISFHSLEDRLVKWAFRRD-----------------PRWQVLTPKPLSPSELE 298 Query: 300 VAFNRRSRSAKLRAGMR 316 N R+RSAKLR R Sbjct: 299 RQRNPRARSAKLRVAAR 315 >gi|239618274|ref|YP_002941596.1| S-adenosyl-methyltransferase MraW [Kosmotoga olearia TBF 19.5.1] gi|263456220|sp|C5CGS3|RSMH_KOSOT RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|239507105|gb|ACR80592.1| S-adenosyl-methyltransferase MraW [Kosmotoga olearia TBF 19.5.1] Length = 298 Score = 344 bits (882), Expect = 2e-92, Method: Composition-based stats. Identities = 116/308 (37%), Positives = 171/308 (55%), Gaps = 28/308 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H V++++ + L P V +D T G GG++++ + S VI LD D ++ ++ Sbjct: 9 HRSVMVQETLHYLRPTYNGVYVDGTLGEGGHTKAIIEATSGKCKVIGLDIDEEVLAIAEQ 68 Query: 77 TMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++++KE LF ++ + + VDG + D+GVS+ Q+ RGFS++ PL Sbjct: 69 NLKEFKENVELFNVSYVDFDLVLESLAVDKVDGFLLDIGVSTYQLKAKGRGFSYEIDEPL 128 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEK-QASRIAHAIVKRRQSAPFQTTQDL 191 DMRMS SG ++A+DVVN K+L RI+ GEEK A RIA IV+RR P QTT L Sbjct: 129 DMRMSLSGSVTAADVVNSYPEKELARIIFEYGEEKRYARRIARKIVERR---PIQTTIQL 185 Query: 192 SSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 I+ + + + H ATR+FQA+RI VN E++ L L LK GG ++++S Sbjct: 186 VEAIKAALPPQERFRRKRHYATRTFQAIRIEVNGELKGLRTALEKFPNYLKPGGRIVIIS 245 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDR VK FF + G + +T+K VVP+ E+V+ N R+RSA Sbjct: 246 FHSLEDRTVKHFFREQDG---------------VTLKILTRKPVVPSVEEVSENPRARSA 290 Query: 310 KLRAGMRT 317 KLRA R Sbjct: 291 KLRAAERI 298 >gi|291384760|ref|XP_002709072.1| PREDICTED: hypothetical protein [Oryctolagus cuniculus] Length = 407 Score = 344 bits (882), Expect = 2e-92, Method: Composition-based stats. Identities = 135/353 (38%), Positives = 193/353 (54%), Gaps = 45/353 (12%) Query: 2 ESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN- 60 + + + M+ H+PV++++V+ L P G+V LD TFG+GG+SR+ + S+ Sbjct: 61 QDRDSEAMTEL-------HIPVMVDEVVRCLAPQKGQVFLDMTFGSGGHSRAILQKESDI 113 Query: 61 -VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVS 114 + ALDRDP A + ++ Y +Q FSQ + + GV DGV+ DLG S Sbjct: 114 TLYALDRDPTAYAIAEQLSDLYPKQIRAMLGQFSQAEALLTKAGVQPGTFDGVLLDLGCS 173 Query: 115 SMQIDCGDRGFSFQKSGPLDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQAS 170 SMQ+D +RGFS +K GPLDMRM +A+DVVN + + L IL GEEK A Sbjct: 174 SMQLDAPERGFSIRKDGPLDMRMDGGRYPDMPTAADVVNALDQQALASILRTYGEEKHAK 233 Query: 171 RIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSK--------NNRIHPATRSFQALRIFVN 222 +IA AIV+ R P TQ L+S++ S H AT++FQALRIFVN Sbjct: 234 KIASAIVQARSIYPITRTQQLASIVAGAFPPSAIYARKDLLQRSTHIATKTFQALRIFVN 293 Query: 223 NEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF-------------------A 263 NE+ EL GL++A+K L+ GG L+ +SFHSLEDR+VK+F A Sbjct: 294 NELNELYTGLKTAQKFLRPGGRLVALSFHSLEDRIVKRFLLGISMTERFNLSVRQKVVQA 353 Query: 264 SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 S+ + + + P +++ I KKV+ P +DV N R RSAKLRA ++ Sbjct: 354 SQLSSGPENKEEVSAGRAPLMWELINKKVLTPEDQDVQENPRGRSAKLRAAIK 406 >gi|332829620|gb|EGK02266.1| ribosomal RNA small subunit methyltransferase H [Dysgonomonas gadei ATCC BAA-286] Length = 300 Score = 344 bits (882), Expect = 2e-92, Method: Composition-based stats. Identities = 110/306 (35%), Positives = 166/306 (54%), Gaps = 16/306 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H+P LL + + +N G + +D TFG GG+S+ ++ A D+D A++ QE Sbjct: 3 HIPALLHESVDGMNIRTGSICVDVTFGGGGHSKEILSHLGNKGHLYAFDQDEDAINNIQE 62 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQK-SGP 132 +F+ ++ F L++++ GV D ++ DLGVSS D DRGFSF+ Sbjct: 63 -----DSKFTFIRSNFRFLKNFIKYHGVEEVDAILADLGVSSHHFDAEDRGFSFRFEDSD 117 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ +G +A+ ++N + L I + GE K + RIA AIVK R+ P++ DL Sbjct: 118 LDMRMNQKAGKTAAQILNTYTEEQLADIFYLYGELKPSRRIASAIVKTRKEKPYRKVSDL 177 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + V ++FQALRI VN E+E L + L A LK GG L+V+++H Sbjct: 178 LDTLNSFVGRG-EKEKKVLAQAFQALRIEVNEEMETLKEMLEQALDILKPGGRLVVITYH 236 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDRLVK FF + + + + + P F+ I KV+VP++E+ N RSRSAKL Sbjct: 237 SLEDRLVKNFFKTGNFEGKVEKDFFGNFETP--FKLINNKVIVPSREEEERNPRSRSAKL 294 Query: 312 RAGMRT 317 R + Sbjct: 295 RIAEKI 300 >gi|218248877|ref|YP_002374248.1| S-adenosyl-methyltransferase MraW [Cyanothece sp. PCC 8801] gi|263447389|sp|B7K639|RSMH_CYAP8 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|218169355|gb|ACK68092.1| S-adenosyl-methyltransferase MraW [Cyanothece sp. PCC 8801] Length = 304 Score = 344 bits (882), Expect = 2e-92, Method: Composition-based stats. Identities = 115/302 (38%), Positives = 166/302 (54%), Gaps = 27/302 (8%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCGQET 77 H+ VL ++ IA LN PG LDAT G+GG+SR +V A+DRD A++ Sbjct: 22 HISVLSQETIAGLNIIPGGHYLDATVGSGGHSRLILATFPDVRITAIDRDSQAIAAAASN 81 Query: 78 MRDYK-EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + + E+ +Q F+ + + G++ DLGVSS Q D +RGFSF+ G LDMR Sbjct: 82 LAELGSERLKFWQGNFADYPGKIAE--FSGIIADLGVSSPQFDFPERGFSFRHEGALDMR 139 Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M + ++A +++NQ + L + GEE+++ +A IV++R PF+TT L+ I Sbjct: 140 MDQTQSLTAGEIINQWSETALADLFYQYGEERRSRSMAKHIVQQR---PFKTTTQLAEAI 196 Query: 196 QKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 +TV + RIHPATR FQALRI VN E+ L + L A + L+ GG + ++SFHSLE Sbjct: 197 AQTVPPKYRYGRIHPATRVFQALRIAVNEELSSLERFLDQAPQWLQPGGRIGIISFHSLE 256 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 DR+VK F S +TKK ++P +E+ N RSRSAKLR Sbjct: 257 DRIVKYRFRDSSW-----------------LTVMTKKPIIPQREEQLKNPRSRSAKLRLA 299 Query: 315 MR 316 R Sbjct: 300 ER 301 >gi|291229752|ref|XP_002734836.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii] Length = 377 Score = 343 bits (881), Expect = 2e-92, Method: Composition-based stats. Identities = 126/336 (37%), Positives = 182/336 (54%), Gaps = 30/336 (8%) Query: 12 AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPF 69 +H H+PV+L+ V+ +P +V +D TFGAGG+S K N+ ALDRDP Sbjct: 41 TVHSNEQLHIPVMLDDVLDFFSPEKNQVYIDMTFGAGGHSSEILKCAENITMYALDRDPL 100 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRG 124 A+ ++ + + + FS++ + VDGV+ D G SSMQ+D +RG Sbjct: 101 ALDIAKQLSGLHGNRIIPLEGKFSEITRLLDQHDVGLNSVDGVLLDAGCSSMQMDTAERG 160 Query: 125 FSFQKSGPLDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 FS K GPLDMRM +A+DVVN + DL +I+ GEEK A +IA +IV+ R Sbjct: 161 FSISKDGPLDMRMDSDRDPKQPTAADVVNALSEADLAKIIRTYGEEKHARKIARSIVEYR 220 Query: 181 QS-APFQTTQDLSSLIQKTVYFSKNNR--------IHPATRSFQALRIFVNNEIEELAQG 231 + P TT++ + ++ + + +H AT++FQALRIFVNNE+ EL G Sbjct: 221 TTWQPITTTKEFAYVVSCAFSHREAKKQKDKLRRPVHTATKTFQALRIFVNNELNELVMG 280 Query: 232 LRSAEKALKAGGLLIVVSFHSLEDRLVKKFFA----------SRSGKVMAVRHMIPSNAH 281 L EK LK GG L V++FHSLEDR+VK+F S K+ R + Sbjct: 281 LEQVEKILKPGGKLAVITFHSLEDRIVKRFLRGIDYSEKYSMSIGEKMRENRTRDGDDNR 340 Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 P ++ I KKV+ P +ED+ N R+RSAKLR ++ Sbjct: 341 PQRWKEINKKVLEPLEEDIIDNPRARSAKLRTAVKI 376 >gi|283850522|ref|ZP_06367810.1| S-adenosyl-methyltransferase MraW [Desulfovibrio sp. FW1012B] gi|283574093|gb|EFC22065.1| S-adenosyl-methyltransferase MraW [Desulfovibrio sp. FW1012B] Length = 325 Score = 343 bits (881), Expect = 2e-92, Method: Composition-based stats. Identities = 123/307 (40%), Positives = 176/307 (57%), Gaps = 11/307 (3%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSC 73 + H+PVLL +V+ L PG ILDAT G GG+ + + +V+ LDRD A+S Sbjct: 4 VPSHIPVLLREVVEFLAIRPGMRILDATAGLGGHIKGMLEAAGGEASVLGLDRDREALSE 63 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + Y ++ L + +S+ + + G VD + D G+SS+Q+D +RGF F Sbjct: 64 AGRRLEAYGDRVRLVRTRYSRFPAALAEAGWETVDAALLDAGMSSLQLDDPERGFGFLTD 123 Query: 131 GPLDMRMSCS--GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM G SA +VN A+ L I+ GE+ QA RIA AIV R++AP TT Sbjct: 124 GPLDMRMGVEDGGESAEGLVNLASFARLREIIREYGEDPQAGRIARAIVAERETAPITTT 183 Query: 189 QDLSSLIQKTVYFSKNN--RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 + L+ ++ R HPATR+FQALR+ VN+E+ EL + LR+ + GG + Sbjct: 184 RRLAEVVAAAYPAKWRAMARQHPATRTFQALRMAVNDELGELEEFLRAIPGHIAPGGRVA 243 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V+SFHSLEDRLVK+ F + + R ++ H A F+ +TKK V+ +E+VA N R Sbjct: 244 VISFHSLEDRLVKRAFRLEATDCLCPREQIVCVCGHRARFRILTKKPVMAGEEEVAANSR 303 Query: 306 SRSAKLR 312 +RSAKLR Sbjct: 304 ARSAKLR 310 >gi|86140630|ref|ZP_01059189.1| putative S-adenosyl-methyltransferase [Leeuwenhoekiella blandensis MED217] gi|85832572|gb|EAQ51021.1| putative S-adenosyl-methyltransferase [Leeuwenhoekiella blandensis MED217] Length = 298 Score = 343 bits (881), Expect = 2e-92, Method: Composition-based stats. Identities = 103/304 (33%), Positives = 168/304 (55%), Gaps = 17/304 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H PVLL++ + L P V +D TFG GG+SR K + + A D+D A+ + Sbjct: 4 HNPVLLKETVDGLAIKPDGVYVDVTFGGGGHSREILKRLGDQGKLFAFDQDKDALDNALD 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +F+L F + ++ G VDG++ D GVSS Q D +RGFS + L Sbjct: 64 -----DPRFTLINENFRFAKRFLRFYGAAKVDGILGDFGVSSHQFDVAERGFSTRFDAKL 118 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +SA VVN+ + +DL R+L GE + A ++A +V R+ +TT+DL Sbjct: 119 DMRMNQDDKLSAYHVVNEYSEEDLGRVLLQYGELRSAPKLARTLVSVRKDKAIETTEDLK 178 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +Q + + +++ + +QA+RI VN E+E L + L+ E+ LK GG L ++S+HS Sbjct: 179 QALQSYLPKGREHKL--LAQIYQAIRIEVNQELEVLKEFLQQTEEMLKPGGRLSLISYHS 236 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDRLVK++ + + + + + P F+ + ++VP++E++ N R+RSAKLR Sbjct: 237 LEDRLVKRYMRNGLFEGEPEKDIFGNFTVP--FKKV-GGLIVPSKEEIKQNNRARSAKLR 293 Query: 313 AGMR 316 + Sbjct: 294 VAEK 297 >gi|126654823|ref|ZP_01726357.1| S-adenosyl-methyltransferase MraW [Cyanothece sp. CCY0110] gi|126623558|gb|EAZ94262.1| S-adenosyl-methyltransferase MraW [Cyanothece sp. CCY0110] Length = 304 Score = 343 bits (881), Expect = 2e-92, Method: Composition-based stats. Identities = 113/317 (35%), Positives = 165/317 (52%), Gaps = 31/317 (9%) Query: 9 MSSAIHH----TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI-- 62 M++ H + H PVL ++VI L P LDAT G GG+SR + +V Sbjct: 1 MTNIDHSNQSVSPNLHTPVLCQEVIEGLAIEPNGHYLDATLGRGGHSRLILEAFPDVRVT 60 Query: 63 ALDRDPFAVSCGQETMRDYKE-QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCG 121 +D D A++ Q+ + + E +F ++Q F+ +G++ DLGVSS Q D Sbjct: 61 GIDLDGEAIATTQDNLSEIAENRFQVWQGNFADYPGETAQ--FNGILADLGVSSPQFDVP 118 Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF+ LDMRM+ ++A++++N + L + GEE+++ IA IV++R Sbjct: 119 ERGFSFRHEAVLDMRMNREQSLTAAEIINHWDQTSLADLFYQYGEERRSRPIARRIVQQR 178 Query: 181 QSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 PF+TT +L+ I K + RIHPATR FQALRI VN+E+ L + L A L Sbjct: 179 ---PFETTTELAEAIAKCFPPKQRYGRIHPATRVFQALRIAVNDELGSLERFLEKAPHWL 235 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 K GG + ++SFHSLEDR VK F + +TKK ++ E+ Sbjct: 236 KPGGRIGIISFHSLEDRRVKYSFRDS-----------------LLLDVVTKKPMIAQPEE 278 Query: 300 VAFNRRSRSAKLRAGMR 316 N RSRSAKLR R Sbjct: 279 REKNPRSRSAKLRFAQR 295 >gi|260495075|ref|ZP_05815204.1| MraW methylase [Fusobacterium sp. 3_1_33] gi|260197518|gb|EEW95036.1| MraW methylase [Fusobacterium sp. 3_1_33] Length = 314 Score = 343 bits (881), Expect = 2e-92, Method: Composition-based stats. Identities = 106/308 (34%), Positives = 170/308 (55%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+PVL + + L P V +D T G G +S + S+ +I++D+D A+ ++ Sbjct: 9 HIPVLYYETLDNLVINPDGVYIDCTLGGGSHSEGILERLSDKGLLISIDQDSTAIEYSKK 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + ++ +F+ F + GVD G++ D+GVSS Q+D RGFS++ L Sbjct: 69 RLEKFGSKWKVFKGNFENIDTIAYMAGVDKVDGILMDIGVSSKQLDDPKRGFSYRYDVKL 128 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ ISA D+VN + L++I+ GEE+ A +IA IV+ R+S+P T DL Sbjct: 129 DMRMNTDQKISAYDIVNTYTEEQLSKIIFEYGEERHARKIAKLIVEERKSSPIGKTSDLI 188 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +LI++ + HPA ++FQA+RI VN E+E L + A + LK GG L +++FHS Sbjct: 189 TLIKRAYP--ERASKHPAKKTFQAIRIEVNRELEVLGNAISKAAELLKVGGRLAIITFHS 246 Query: 253 LEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK F + + I F+ ITKK ++P +++ N R+ S+KL Sbjct: 247 LEDRIVKNKFKDLATACKCPKDIPICVCGGVKKFEIITKKPIIPIDDELKNNNRAHSSKL 306 Query: 312 RAGMRTVE 319 R R ++ Sbjct: 307 RILERILD 314 >gi|167586011|ref|ZP_02378399.1| S-adenosyl-methyltransferase MraW [Burkholderia ubonensis Bu] Length = 313 Score = 343 bits (881), Expect = 2e-92, Method: Composition-based stats. Identities = 112/312 (35%), Positives = 173/312 (55%), Gaps = 19/312 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H VLL++ + L P + +D TFG GG+SR+ +IA D+DP A+ Q Sbjct: 7 HRTVLLDEAVDALVTRPDGIYVDGTFGRGGHSRAVLARLGAAGRLIAFDKDPRAIETAQ- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +F++ +F+ +Q + +G V GV+ DLGVSS Q+D RGFSF+ GPL Sbjct: 66 --GIEDARFAIVHDSFASMQGALAARGIGKVSGVLLDLGVSSPQVDDPQRGFSFRADGPL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS----APFQTT 188 DMRM + G SA++ + +A++++LT ++ GEE+ A +IA A+V RR P +T Sbjct: 124 DMRMDPTRGESAAEWLARASLQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDST 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ ++ V + PATR+FQA+RI VN E+ +L L +A L+ GG L+V+ Sbjct: 184 GELAQIVGHVVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVI 242 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDVAFNRRS 306 SFHSLEDR+VK+F + + R + + + I +K P+ +VA N R+ Sbjct: 243 SFHSLEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPPLKIIGRK--FPSDAEVAANPRA 300 Query: 307 RSAKLRAGMRTV 318 RSA +R R Sbjct: 301 RSAVMRIAERVA 312 >gi|119493501|ref|ZP_01624168.1| S-adenosyl-methyltransferase [Lyngbya sp. PCC 8106] gi|119452684|gb|EAW33864.1| S-adenosyl-methyltransferase [Lyngbya sp. PCC 8106] Length = 291 Score = 343 bits (881), Expect = 2e-92, Method: Composition-based stats. Identities = 117/306 (38%), Positives = 164/306 (53%), Gaps = 30/306 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCGQET 77 H+PVL ++IA L G LDAT G GG+S + +V A+D+D A++ + Sbjct: 6 HIPVLSRELIAGLFVVAGGHYLDATVGGGGHSLLILQAAPDVRITAIDQDEVAIAATRAR 65 Query: 78 MRD----YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + + ++ ++ F+ Q DG++ DLGV+S Q+D RGFSF+ S PL Sbjct: 66 LAEVEPCFADRVQFWRGNFADYQP--QGMQFDGIIADLGVNSSQLDTPTRGFSFRHSAPL 123 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +SA+D++N + +L I GEE+ + RIA IV+ R PF+TT L+ Sbjct: 124 DMRMNLQQSLSAADIINTWDEGELADIFFHYGEERLSRRIARRIVQNR---PFETTTQLA 180 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I + RIHPATR FQALRI VN E+ L L A + LK GG + V+SFH Sbjct: 181 DVIASCYPSKSRYGRIHPATRVFQALRIAVNQELTALETFLSRAPQWLKLGGRIGVISFH 240 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR VK+ F S S Q +TKK + ++A N RSRSAKL Sbjct: 241 SLEDRRVKQSFKSDSD-----------------LQVLTKKPIQAQALEIADNPRSRSAKL 283 Query: 312 RAGMRT 317 R R Sbjct: 284 RLAERI 289 >gi|134095979|ref|YP_001101054.1| S-adenosyl-methyltransferase MraW [Herminiimonas arsenicoxydans] gi|263456141|sp|A4G8U6|RSMH_HERAR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|133739882|emb|CAL62933.1| S-adenosyl-dependent methyl transferase MraW [Herminiimonas arsenicoxydans] Length = 321 Score = 343 bits (880), Expect = 2e-92, Method: Composition-based stats. Identities = 106/316 (33%), Positives = 171/316 (54%), Gaps = 18/316 (5%) Query: 20 HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSC 73 H VLLE+ + L + +D TFG GG+SR + ++A D+D A++ Sbjct: 11 HRTVLLEEAVDALALDGERANGMYVDGTFGRGGHSRLILQRLGENGCLLAFDKDTQAIAN 70 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 ++F++ +F+ L + ++G V+GV+ DLG+SS Q+D RGFSF+ Sbjct: 71 AATI---EDKRFAIVHDSFATLSTALAERGIAQVNGVLLDLGISSPQVDDAARGFSFRAD 127 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 GPLDMRM + GISA++ + + + +++ GEE+ A +IA AIV R P +T+ Sbjct: 128 GPLDMRMDTTRGISAAEWLATETEQKIEKVIREYGEERFAFQIAKAIVAGRAVQPISSTR 187 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ ++ + V + PATR+FQA+RIF+N E+EEL L A + L G L+V+S Sbjct: 188 QLAEIVARAVKT-REKGKDPATRTFQAIRIFINQELEELEVVLNEAYRHLAPHGRLVVIS 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 FHSLEDR+VK+F AS++ R + + + I + + P+ +++ N R+R Sbjct: 247 FHSLEDRIVKQFMASKANVPQPDRRLPIRAVDLPQPEMKLIAR--IKPSAAEISANPRAR 304 Query: 308 SAKLRAGMRTVERSIE 323 SA +R R Sbjct: 305 SAVMRVAERLPTPGAA 320 >gi|327313078|ref|YP_004328515.1| S-adenosyl-methyltransferase MraW [Prevotella denticola F0289] gi|326945605|gb|AEA21490.1| S-adenosyl-methyltransferase MraW [Prevotella denticola F0289] Length = 314 Score = 343 bits (880), Expect = 2e-92, Method: Composition-based stats. Identities = 111/306 (36%), Positives = 169/306 (55%), Gaps = 13/306 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPFAVSCGQE 76 HVPVLL + I LN G + +D TFG GG+SR + GS++ + D+D A Sbjct: 9 HVPVLLNESIEGLNLHAGGIYVDVTFGGGGHSREILSRLEAGSHLYSFDQDADAEQNIGR 68 Query: 77 --TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + ++F+ ++ F L++++ V DG++ DLGVSS D RGFSF+ Sbjct: 69 MGLSSEQVDRFTFIRSNFRYLKNWMRYYSVPHIDGLLADLGVSSHHFDDETRGFSFRFEA 128 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ +G++A+D++N+ + + L IL + GE KQ+ RIA AIVK R+ ++TT D Sbjct: 129 PLDMRMNKRAGMTAADILNEYDEEHLADILYLYGELKQSRRIAAAIVKGREQKAYKTTND 188 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L L+ +F + + FQALRI VN E++ L + L +A L GG L V+++ Sbjct: 189 L--LVITDPFFRRAREKKDMAKLFQALRIEVNYEMDALREMLLAAIGLLSPGGRLSVITY 246 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDR+VK S + + + P F+ + KV+ ++ N RSRSAK Sbjct: 247 HSLEDRMVKNVMKSGNIEGKVSQDFFGRIDTP--FRLVNSKVITANNDEQERNPRSRSAK 304 Query: 311 LRAGMR 316 LR + Sbjct: 305 LRIAEK 310 >gi|325856519|ref|ZP_08172208.1| S-adenosyl-methyltransferase MraW [Prevotella denticola CRIS 18C-A] gi|325483488|gb|EGC86461.1| S-adenosyl-methyltransferase MraW [Prevotella denticola CRIS 18C-A] Length = 314 Score = 343 bits (880), Expect = 2e-92, Method: Composition-based stats. Identities = 110/306 (35%), Positives = 169/306 (55%), Gaps = 13/306 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPFAVSCGQE 76 HVPVLL + I LN G + +D TFG GG+SR + GS++ + D+D A Sbjct: 9 HVPVLLNESIEGLNLHAGGIYVDVTFGGGGHSREILSRLEAGSHLYSFDQDADAEQNIGR 68 Query: 77 --TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + ++F+ ++ F L++++ V DG++ DLGVSS D RGFSF+ Sbjct: 69 MGLSSEQVDRFTFIRSNFRYLKNWMRYYSVPHIDGLLADLGVSSHHFDDETRGFSFRFEA 128 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ +G++A+D++N+ + + L IL + GE KQ+ RIA AIVK R+ ++TT D Sbjct: 129 PLDMRMNKRAGMTAADILNEYDEEHLADILYLYGELKQSRRIAAAIVKGREQKAYKTTND 188 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L ++ +F + + FQALRI VN E++ L + L +A L GG L V+++ Sbjct: 189 LLAITDP--FFRRAREKKDMAKLFQALRIEVNYEMDALREMLLAAIGLLSPGGRLSVITY 246 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDR+VK S + + + P F+ + KV+ ++ N RSRSAK Sbjct: 247 HSLEDRMVKNVMKSGNIEGKVSQDFFGRIDTP--FRLVNSKVITANNDEQERNPRSRSAK 304 Query: 311 LRAGMR 316 LR + Sbjct: 305 LRIAEK 310 >gi|325001098|ref|ZP_08122210.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudonocardia sp. P1] Length = 337 Score = 343 bits (880), Expect = 2e-92, Method: Composition-based stats. Identities = 112/318 (35%), Positives = 172/318 (54%), Gaps = 10/318 (3%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSNV--IAL 64 + H PVLLE+V ALL PA V +DAT G GG++ + + + L Sbjct: 6 TGPDPSPAERHTPVLLERVSALLAPAIADRPAVYVDATLGMGGHAAALLATHPQLTVVGL 65 Query: 65 DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCG 121 DRDP A+ + Y ++ A + ++ + + + GV D ++FDLGVSS+Q+D Sbjct: 66 DRDPQALDLAGRRLTAYADRLRPVHAVYDRIGEALDETGVGPADAILFDLGVSSLQLDEV 125 Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFS+ + LDMRM + G +A+DV+N L RIL GEE+ A IA+AIV+ R Sbjct: 126 ERGFSYSRDADLDMRMDPTTGPTAADVLNTYTAPQLRRILREYGEERFAGPIANAIVRNR 185 Query: 181 QSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 PF + +L L+ V + + HPA R+FQALRI VN E++ L L +A AL Sbjct: 186 DKRPFTRSAELVELLYGVVPAASRRTGGHPAKRTFQALRIEVNAELDVLRDALPAAFDAL 245 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 GG ++V+++HSLEDR+ K+ A R+ + + H F+ +T+ + ++ Sbjct: 246 APGGRIVVLAYHSLEDRITKRALAERTRSRTPLDLPVELPGHEPEFRLLTRGAETASDDE 305 Query: 300 VAFNRRSRSAKLRAGMRT 317 + N R+ +LRA RT Sbjct: 306 IERNPRAAPVRLRAAERT 323 >gi|99034246|ref|ZP_01314308.1| hypothetical protein Wendoof_01000895 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 314 Score = 343 bits (880), Expect = 3e-92, Method: Composition-based stats. Identities = 127/323 (39%), Positives = 183/323 (56%), Gaps = 39/323 (12%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQETM 78 H PVLL+++++LL+P G + +DATFGAGGYS++ + V A+DRD + Sbjct: 3 HTPVLLKEMLSLLSPQDGGIYVDATFGAGGYSKAILESADCKVYAIDRDETVTKFYDDLS 62 Query: 79 RDYKEQFSLFQATFSQLQDYVPD------------------------KGVDGVVFDLGVS 114 Y ++ LF FS ++ + GVDGVVFD+GVS Sbjct: 63 VRYPDRIKLFIEKFSNIKSILSSVKPSPVIPVLDTGKNNWSRAGMTSNGVDGVVFDIGVS 122 Query: 115 SMQIDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIA 173 SMQ+D GDRGFSF GPLDM M S I+AS VN +++ + G E+ + +IA Sbjct: 123 SMQLDNGDRGFSFLHDGPLDMSMDNSSYINASTFVNALREEEIANTIYNYGGERHSRKIA 182 Query: 174 HAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLR 233 AI+ R+ +TT +L+ +++ V+ K ++I PATR+FQA+RI+VN+E+EEL +G++ Sbjct: 183 RAIINARKKKTIKTTFELADIVRSVVFRGK-SKIDPATRTFQAIRIWVNDELEELEKGIK 241 Query: 234 SAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV 293 +A + L G LIVV+FHSLEDR+VK FF F + KKV+ Sbjct: 242 AASEILSENGKLIVVTFHSLEDRIVKTFFKDLCATDC------------KTFSLLNKKVI 289 Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316 + E+V+ N RSRSAKLRA R Sbjct: 290 EASIEEVSANPRSRSAKLRAIQR 312 >gi|115350509|ref|YP_772348.1| S-adenosyl-methyltransferase MraW [Burkholderia ambifaria AMMD] gi|123322723|sp|Q0BIK9|RSMH_BURCM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|115280497|gb|ABI86014.1| S-adenosyl-methyltransferase MraW [Burkholderia ambifaria AMMD] Length = 313 Score = 343 bits (880), Expect = 3e-92, Method: Composition-based stats. Identities = 114/311 (36%), Positives = 177/311 (56%), Gaps = 19/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VLL++ + L P + +D TFG GG+SR+ G +IA D+DP A+ + Sbjct: 7 HRTVLLDEAVESLVTRPDGIYVDGTFGRGGHSRAVLARLAEGGRLIAFDKDPRAIETA-Q 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + D +FS+ +F+ ++D + +G V GV+ DLGVSS Q+D RGFSF+ GPL Sbjct: 66 RIEDA--RFSIVHDSFASMRDALAARGIEKVSGVLLDLGVSSPQVDDPARGFSFRADGPL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS----APFQTT 188 DMRM + G SA++ + +A+V++LT ++ GEE+ A +IA A+V RR P TT Sbjct: 124 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDTT 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ ++ V + PATR+FQA+RI VN E+ +L L +A L+ GG L+V+ Sbjct: 184 GELAQIVGHVVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVI 242 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDVAFNRRS 306 SFHSLEDR+VK+F + + R + + + I++ P++ +V N R+ Sbjct: 243 SFHSLEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPPLKIISR--QFPSEAEVVANPRA 300 Query: 307 RSAKLRAGMRT 317 RSA +R R Sbjct: 301 RSAVMRIAERV 311 >gi|73988949|ref|XP_534100.2| PREDICTED: similar to methyltransferase 5 domain containing 1 [Canis familiaris] Length = 694 Score = 343 bits (880), Expect = 3e-92, Method: Composition-based stats. Identities = 129/335 (38%), Positives = 187/335 (55%), Gaps = 38/335 (11%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H+PV++++V+ L P G++ LD TFG+GG++R+ + S+ + ALDRDP A + ++ Sbjct: 359 HIPVMVDEVVRCLAPQKGQIFLDMTFGSGGHTRAILQKESDITLYALDRDPTAYAIAEQL 418 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 Y +Q FSQ + + GV DGV+ D G SSMQ+D +RGFS +K GP Sbjct: 419 SELYPKQIRALLGQFSQAEALLMKAGVQPGTLDGVLLDPGCSSMQLDAPERGFSLRKDGP 478 Query: 133 LDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM +A+DVVN + + L IL GEEK A +IA AIV+ R P T Sbjct: 479 LDMRMDGGRYPDMPTAADVVNALDQQALASILRTYGEEKHAKKIASAIVQARSLYPISRT 538 Query: 189 QDLSSLIQKTVY----FSKN----NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 Q L+S++ F++ H AT++FQA RIFVNNE+ EL GL++A+K L+ Sbjct: 539 QQLASIVAGAFPPSAVFARKDLLQRSTHIATKTFQAFRIFVNNELNELYTGLKTAQKFLR 598 Query: 241 AGGLLIVVSFHSLEDRLVKKFF-------------------ASRSGKVMAVRHMIPSNAH 281 GG L+ +SFHSLEDR+VK+F A + G + Sbjct: 599 PGGRLVALSFHSLEDRIVKRFLLGISMTERFNLSARQKVIQALKLGSGRENMEGASISKA 658 Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 P +++ I KKV+ P ++V N R+RSAKLRA ++ Sbjct: 659 PLMWELIHKKVLTPDDQEVQENPRARSAKLRAAIK 693 >gi|226941977|ref|YP_002797051.1| S-adenosyl-methyltransferase MraW [Laribacter hongkongensis HLHK9] gi|263456276|sp|C1D5M5|RSMH_LARHH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|226716904|gb|ACO76042.1| MraW [Laribacter hongkongensis HLHK9] Length = 317 Score = 343 bits (880), Expect = 3e-92, Method: Composition-based stats. Identities = 115/308 (37%), Positives = 167/308 (54%), Gaps = 13/308 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 HV VLL++ + L P V +D TFG GG+SR ++A D+DP A++ E Sbjct: 7 HVTVLLQEAVEALAIRPDGVYVDCTFGRGGHSRLVLSRLGPAGRLVAFDKDPQAIAVATE 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + ++ F+ L + G VDGV+ DLGVSS QID RGFSF+ PL Sbjct: 67 L---DDPRLTIVHEGFAGLDRELDRLGIDKVDGVLMDLGVSSPQIDDASRGFSFRFDAPL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF-QTTQDL 191 DMRM + G +A+D + +A+ ++ ++ GEE+ A+ IA AIV R F TT +L Sbjct: 124 DMRMDTTRGETAADWLARADEAEIRTVIRDYGEERFAASIARAIVANRLEGQFLTTTGEL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++L + V ++ PATR+FQA+RIF+N E++EL L A + L+ GG L+V++FH Sbjct: 184 AALCARCV-RTREKGQDPATRTFQAIRIFINRELDELQAVLPQAVRRLRPGGRLVVIAFH 242 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK F S R + A P + K V E +A N R+RSA Sbjct: 243 SLEDRIVKLFLRDASSPPELPRGLPVRAADLPEPPLRLVGKPVREGDEQLARNPRARSAI 302 Query: 311 LRAGMRTV 318 +R R+ Sbjct: 303 MRVAERSA 310 >gi|325954324|ref|YP_004237984.1| ribosomal RNA small subunit methyltransferase H [Weeksella virosa DSM 16922] gi|323436942|gb|ADX67406.1| Ribosomal RNA small subunit methyltransferase H [Weeksella virosa DSM 16922] Length = 301 Score = 343 bits (880), Expect = 3e-92, Method: Composition-based stats. Identities = 105/304 (34%), Positives = 165/304 (54%), Gaps = 17/304 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H PVLL++ + L P V +D TFG GG+SR + A D+D A E Sbjct: 7 HNPVLLQESVDALVVNPSGVYVDCTFGGGGHSREILSRLDDNGRLYAFDQDEDAKQNKIE 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 E+F L F L++ + +GV DG++ DLGVSS Q D +RGFS + G L Sbjct: 67 -----DERFELIDQNFRYLKNNLRFRGVKQVDGILADLGVSSHQFDTPERGFSIRFDGEL 121 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ S +SA ++VN+ + L I GE K + R+A I+K R + +T + L Sbjct: 122 DMRMNINSSLSAKNIVNEYDEDQLADIFYNYGELKGSRRLASEIIKARNNQSIETIEHLK 181 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 + + KN + FQALRI VN+E+ L + L + + ++ G L+V+S+HS Sbjct: 182 DIFS---FIPKNKENKFFAQVFQALRIEVNDEMAALREMLLQSGEIVRPEGRLVVISYHS 238 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDRLVK++ + + R + + + P F+ + KV+VP+++++ N R+RSAK+R Sbjct: 239 LEDRLVKRYMRNGVFEGEPERDIYGNWSAP--FKPLQSKVIVPSEKEIEENSRARSAKMR 296 Query: 313 AGMR 316 ++ Sbjct: 297 IAVK 300 >gi|89074178|ref|ZP_01160677.1| S-adenosyl-methyltransferase [Photobacterium sp. SKA34] gi|89050114|gb|EAR55640.1| S-adenosyl-methyltransferase [Photobacterium sp. SKA34] Length = 315 Score = 343 bits (880), Expect = 3e-92, Method: Composition-based stats. Identities = 116/313 (37%), Positives = 173/313 (55%), Gaps = 19/313 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 +HV VLL + + L P + +D TFG GG+SR + ++DRDP A++ Q Sbjct: 6 EHVSVLLNESVDGLAIKPDGIYIDGTFGRGGHSRLILSHLGENGRLYSIDRDPQAIAEAQ 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +F + FS ++ Y+ ++ VDGV+ DLGVSS Q+D +RGFSF + G Sbjct: 66 KI---DDPRFEIIHGPFSGMEKYMEERDLIGRVDGVLLDLGVSSPQLDDAERGFSFMRDG 122 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ---SAPFQT 187 PLDMRM SG SA++ + +A D+ +L GEE+ A RIA IV+ R+ P Sbjct: 123 PLDMRMDPTSGQSAAEWLAEAEADDIAWVLKEFGEERFAKRIARGIVEHRENPEKEPLTR 182 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T++L+SLI F K+ HPATRSFQA+RI++N+E++E+ L A L G L V Sbjct: 183 TRELASLIAAVSPF-KDKHKHPATRSFQAIRIYINSELDEIETALNGAVNILAPEGRLSV 241 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVVVPTQEDVAFN 303 +SFHSLEDR+VK+F +S + + K + P+Q+++ +N Sbjct: 242 ISFHSLEDRMVKRFIRKQSKGPEVPAGLPLTEEQIKALGSAALKTVGKAIKPSQDELGYN 301 Query: 304 RRSRSAKLRAGMR 316 R+RS+ LR R Sbjct: 302 TRARSSVLRLAQR 314 >gi|254246426|ref|ZP_04939747.1| S-adenosyl-methyltransferase [Burkholderia cenocepacia PC184] gi|124871202|gb|EAY62918.1| S-adenosyl-methyltransferase [Burkholderia cenocepacia PC184] Length = 319 Score = 343 bits (880), Expect = 3e-92, Method: Composition-based stats. Identities = 115/311 (36%), Positives = 175/311 (56%), Gaps = 19/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H VLL++ + L P V +D TFG GG+SR+ +IA D+DP A+ Q Sbjct: 13 HRTVLLDEAVESLVTRPDGVYVDGTFGRGGHSRAVLARLASAGRLIAFDKDPRAIETAQ- 71 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +FS+ +F+ ++D + +GV GV+ DLGVSS Q+D RGFSF+ GPL Sbjct: 72 --GIEDARFSIVHDSFASMRDALAARGVEKVSGVLLDLGVSSPQVDDPARGFSFRADGPL 129 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS----APFQTT 188 DMRM + G SA++ + +A+V++LT ++ GEE+ A +IA A+V RR P TT Sbjct: 130 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDTT 189 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ ++ V + PATR+FQA+RI VN E+ +L L +A L+ GG L+V+ Sbjct: 190 GELAQIVGHVVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVI 248 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDVAFNRRS 306 SFHSLEDR+VK+F + + R + + + I++ P++ +VA N R+ Sbjct: 249 SFHSLEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPPLKIISR--QFPSEAEVAANPRA 306 Query: 307 RSAKLRAGMRT 317 RSA +R R Sbjct: 307 RSAVMRIAERV 317 >gi|42520071|ref|NP_965986.1| S-adenosyl-methyltransferase MraW [Wolbachia endosymbiont of Drosophila melanogaster] gi|88912336|sp|P62478|RSMH_WOLPM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|42409808|gb|AAS13920.1| S-adenosyl-methyltransferase MraW [Wolbachia endosymbiont of Drosophila melanogaster] Length = 314 Score = 343 bits (880), Expect = 3e-92, Method: Composition-based stats. Identities = 127/323 (39%), Positives = 183/323 (56%), Gaps = 39/323 (12%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQETM 78 H PVLL+++++LL+P G + +DATFGAGGYS++ + V A+DRD + Sbjct: 3 HTPVLLKEMLSLLSPQDGGIYVDATFGAGGYSKAILESADCKVYAIDRDETVTKFYDDLS 62 Query: 79 RDYKEQFSLFQATFSQLQDYVPD------------------------KGVDGVVFDLGVS 114 Y ++ LF FS ++ + GVDGVVFD+GVS Sbjct: 63 VRYPDRIKLFIEKFSNIKSILSSVEPSPVIPVLDTGKNNWSRAGMTSNGVDGVVFDIGVS 122 Query: 115 SMQIDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIA 173 SMQ+D GDRGFSF GPLDM M S I+AS VN +++ + G E+ + +IA Sbjct: 123 SMQLDNGDRGFSFLHDGPLDMSMDNSSYINASTFVNALREEEIANTIYNYGGERHSRKIA 182 Query: 174 HAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLR 233 AI+ R+ +TT +L+ +++ V+ K ++I PATR+FQA+RI+VN+E+EEL +G++ Sbjct: 183 RAIINARKKKTIKTTFELADIVRSVVFRGK-SKIDPATRTFQAIRIWVNDELEELEKGIK 241 Query: 234 SAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV 293 +A + L G LIVV+FHSLEDR+VK FF F + KKV+ Sbjct: 242 AASEILSENGKLIVVTFHSLEDRIVKTFFKDLCATDC------------KTFSLLNKKVI 289 Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316 + E+V+ N RSRSAKLRA R Sbjct: 290 EASIEEVSANPRSRSAKLRAIQR 312 >gi|220933941|ref|YP_002512840.1| S-adenosyl-methyltransferase MraW [Thioalkalivibrio sp. HL-EbGR7] gi|262825935|sp|B8GMM1|RSMH_THISH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|219995251|gb|ACL71853.1| S-adenosyl-methyltransferase MraW [Thioalkalivibrio sp. HL-EbGR7] Length = 314 Score = 343 bits (880), Expect = 3e-92, Method: Composition-based stats. Identities = 121/308 (39%), Positives = 168/308 (54%), Gaps = 11/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H VLLE+ + L P + LD TFG GG+S + +IALDRDP A + Sbjct: 9 HRAVLLEEAVEALAVRPDGIYLDGTFGRGGHSGRILERLGPDGRLIALDRDPEAEAEAAR 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 D E+F + +F LQ G+ DGV+ DLGVSS Q+D +RGFSF GP Sbjct: 69 RFGD-DERFHFERCSFEMLQQVTDRLGISGRLDGVLLDLGVSSPQLDTPERGFSFMSDGP 127 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM SG SA+ + +AN ++ +L GEE+ A RIA IV+ RQ P + T+ L Sbjct: 128 LDMRMDPESGESAAAWLARANEDEIAWVLKEYGEERFARRIARRIVETRQEMPLERTRQL 187 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI + V F + ++ HPATRSFQA+RI VN+E+E L + L L GG L V+SFH Sbjct: 188 AELIAEAVPFKERHK-HPATRSFQAIRIRVNDELETLPRCLEQIPALLAPGGRLAVISFH 246 Query: 252 SLEDRLVKKFFA-SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK+F G+ + + +A + + + + ++ N R+RSA Sbjct: 247 SLEDRMVKRFLRDQAEGERLPRGLPVQGDARRGQTLRLVGRAIRAGEAELDQNPRARSAV 306 Query: 311 LRAGMRTV 318 LR R Sbjct: 307 LRVAERLA 314 >gi|163846346|ref|YP_001634390.1| S-adenosyl-methyltransferase MraW [Chloroflexus aurantiacus J-10-fl] gi|222524111|ref|YP_002568582.1| S-adenosyl-methyltransferase MraW [Chloroflexus sp. Y-400-fl] gi|263445774|sp|A9WG80|RSMH_CHLAA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446400|sp|B9LKK0|RSMH_CHLSY RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|163667635|gb|ABY34001.1| S-adenosyl-methyltransferase MraW [Chloroflexus aurantiacus J-10-fl] gi|222447990|gb|ACM52256.1| S-adenosyl-methyltransferase MraW [Chloroflexus sp. Y-400-fl] Length = 301 Score = 343 bits (880), Expect = 3e-92, Method: Composition-based stats. Identities = 125/310 (40%), Positives = 179/310 (57%), Gaps = 22/310 (7%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73 H PVLL +V+ +L P P LDAT G GG++ + + G ++ +D DP A++ Sbjct: 4 TFQHTPVLLTEVLTMLAPRPAGQYLDATVGGGGHALAVLQAAQPGGRLLGIDADPAALAA 63 Query: 74 GQETMRDYK--EQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQ 128 ++ EQ L +F+ L G DG++FDLGVSS Q+D +RGFSF Sbjct: 64 TAARLQAAGLIEQAVLCHGSFADLATLAATAGFGAFDGILFDLGVSSYQLDTPERGFSFT 123 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 GPLDMR+ + G++A+D+VN+ + ++L I+ + GEE A RIA AIV+ R++ PFQ Sbjct: 124 ADGPLDMRLDPTQGLTAADMVNRLSERELADIIFLYGEEHAARRIARAIVEHRRTQPFQR 183 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T +L+ ++ + V ++ RIHPATR+FQALRI VN E++ L L A L GG L V Sbjct: 184 TAELAEVVARAV-GGRHGRIHPATRTFQALRIAVNQELDRLRATLPQAVDLLAPGGRLAV 242 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +SFHSLEDR+VK+F + + +TKK +VPT +VA N R+R Sbjct: 243 ISFHSLEDRIVKQFLRAEAS------------GETPRLTIVTKKPIVPTAAEVANNPRAR 290 Query: 308 SAKLRAGMRT 317 SAKLR R Sbjct: 291 SAKLRVATRI 300 >gi|170696713|ref|ZP_02887828.1| S-adenosyl-methyltransferase MraW [Burkholderia graminis C4D1M] gi|170138376|gb|EDT06589.1| S-adenosyl-methyltransferase MraW [Burkholderia graminis C4D1M] Length = 317 Score = 342 bits (879), Expect = 3e-92, Method: Composition-based stats. Identities = 118/323 (36%), Positives = 181/323 (56%), Gaps = 20/323 (6%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 M+SA+ + + H VLLE+ +A L V +D TFG GG+SR + +IA D Sbjct: 1 MASAMRNELQ-HRTVLLEEAVAALVTRADGVYVDGTFGRGGHSRLVLEKLGQAGRLIAFD 59 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGD 122 +DP A++ Q+ +F + +F+ L+ + ++G V GV+ DLGVSS Q+D + Sbjct: 60 KDPLAIATAQQI---GDPRFGIVHESFASLRTAIAERGIERVSGVLLDLGVSSPQVDDPE 116 Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF+ GPLDMRM + G SA+D + +A V++LT ++ GEE+ A +IA A+V RR Sbjct: 117 RGFSFRADGPLDMRMDPTRGESAADWLARATVQELTEVIRDYGEERFAFQIAKALVARRA 176 Query: 182 S----APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 P +T +L+ ++ V + PATR+FQA+RI +N E+ EL L +A Sbjct: 177 ESDRLGPLVSTGELAQIVANVVKT-REKGKDPATRTFQAIRIHINQELAELQVVLEAALS 235 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVP 295 L+ GG L+V+SFHSLEDR+VK+F + + R + + + I + V Sbjct: 236 LLEQGGRLVVISFHSLEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPPLKIIGR--VFA 293 Query: 296 TQEDVAFNRRSRSAKLRAGMRTV 318 + +VA N R+RSA +R R Sbjct: 294 SDAEVAANPRARSAVMRVAERIA 316 >gi|90580220|ref|ZP_01236027.1| S-adenosyl-methyltransferase [Vibrio angustum S14] gi|90438522|gb|EAS63706.1| S-adenosyl-methyltransferase [Vibrio angustum S14] Length = 315 Score = 342 bits (879), Expect = 3e-92, Method: Composition-based stats. Identities = 116/313 (37%), Positives = 173/313 (55%), Gaps = 19/313 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 +HV VLL + + L P + +D TFG GG+SR + ++DRDP A++ Q Sbjct: 6 EHVSVLLNESVDGLAIKPDGIYIDGTFGRGGHSRLILSHLGENGRLYSIDRDPQAIAEAQ 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +F + FS ++ Y+ ++ VDGV+ DLGVSS Q+D +RGFSF + G Sbjct: 66 KI---DDPRFEIIHGPFSGMEKYMEERDLIGRVDGVLLDLGVSSPQLDDAERGFSFMRDG 122 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ---SAPFQT 187 PLDMRM SG SA++ + +A D+ +L GEE+ A RIA IV+ R+ P Sbjct: 123 PLDMRMDPTSGQSAAEWLAEAEADDIAWVLKEFGEERFAKRIARGIVEHRENPEKEPLTR 182 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T++L+SLI F K+ HPATRSFQA+RI++N+E++E+ L A L G L V Sbjct: 183 TRELASLIAAVSPF-KDKHKHPATRSFQAIRIYINSELDEIETALNGAVNILAPEGRLSV 241 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVVVPTQEDVAFN 303 +SFHSLEDR+VK+F +S + + K + P+Q+++ +N Sbjct: 242 ISFHSLEDRMVKRFIRKQSKGPEVPAGLPLTEEQIKALGSAALKTLGKAIKPSQDELGYN 301 Query: 304 RRSRSAKLRAGMR 316 R+RS+ LR R Sbjct: 302 TRARSSVLRLAER 314 >gi|300021770|ref|YP_003754381.1| S-adenosyl-methyltransferase MraW [Hyphomicrobium denitrificans ATCC 51888] gi|299523591|gb|ADJ22060.1| S-adenosyl-methyltransferase MraW [Hyphomicrobium denitrificans ATCC 51888] Length = 345 Score = 342 bits (879), Expect = 3e-92, Method: Composition-based stats. Identities = 124/293 (42%), Positives = 187/293 (63%), Gaps = 8/293 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQETM 78 H+PVL +V+ L P G+ +D TFGAGGY+R+ + V+ALDRDP A+ + Sbjct: 21 HIPVLRSEVLETLAPKAGETYIDGTFGAGGYTRAILEAADCRVLALDRDPNAIRGAAPLL 80 Query: 79 RDYKEQFSLFQATFSQLQDY----VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++ + +L ++ FS+L++ + VDGVV D+GVSSMQ+D +RGFSFQ GPLD Sbjct: 81 AEFAPRLTLVESPFSRLEEVAQDALGGAQVDGVVLDIGVSSMQLDDAERGFSFQHDGPLD 140 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRMS +G + +D VN A + + ++ GEE ++ IA AIV+RR P+ T++L+ Sbjct: 141 MRMSSNGQTVADFVNSAAEEIIANVIYAFGEEHKSRAIARAIVRRRAETPYARTRELADT 200 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 + + + K + HPATR+FQALRIF+N+E+ ELA L +AE+ L+ GG L+VVSFHSLE Sbjct: 201 VSRVFHGRKVDGRHPATRTFQALRIFINDELGELASALSAAERVLRPGGRLVVVSFHSLE 260 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSN---AHPAVFQSITKKVVVPTQEDVAFNR 304 DR+VKKF A RSGK +V +P+ + P F+ + + + P++ ++ N Sbjct: 261 DRIVKKFIAERSGKTQSVSRHLPTETIKSTPPSFRIVNSRPLTPSKGELDVNP 313 >gi|225677071|ref|ZP_03788076.1| S-adenosyl-methyltransferase [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590893|gb|EEH12115.1| S-adenosyl-methyltransferase [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 314 Score = 342 bits (879), Expect = 3e-92, Method: Composition-based stats. Identities = 126/323 (39%), Positives = 182/323 (56%), Gaps = 39/323 (12%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQETM 78 H PVLL+++++LL+P G + +DATFGAGGYS++ + V A+DRD + Sbjct: 3 HTPVLLKEMLSLLSPQDGGIYVDATFGAGGYSKAILESADCKVYAIDRDETVTKFYDDLS 62 Query: 79 RDYKEQFSLFQATFSQLQDYVPD------------------------KGVDGVVFDLGVS 114 Y ++ LF FS ++ + GVDGVVFD+GVS Sbjct: 63 VRYPDRIKLFIEKFSNIKSILSSVEPSPVIPVLDTGKNNWSRAGMTSNGVDGVVFDIGVS 122 Query: 115 SMQIDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIA 173 SMQ+D GDRGFSF GPLDM M S I+AS VN +++ + G E+ + +IA Sbjct: 123 SMQLDNGDRGFSFLHDGPLDMSMDNSSYINASTFVNALREEEIANTIYNYGGERHSRKIA 182 Query: 174 HAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLR 233 AI+ R+ +TT +L+ +++ V+ K ++I PATR+FQA+RI+VN+E+ EL +G++ Sbjct: 183 RAIINARKKKTIKTTFELADIVRSVVFRGK-SKIDPATRTFQAIRIWVNDELGELEKGIK 241 Query: 234 SAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV 293 +A + L G LIVV+FHSLEDR+VK FF F + KKV+ Sbjct: 242 AASEILSENGKLIVVTFHSLEDRIVKTFFKDLCATDC------------KTFSLLNKKVI 289 Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316 + E+V+ N RSRSAKLRA R Sbjct: 290 EASIEEVSANPRSRSAKLRAIQR 312 >gi|187925450|ref|YP_001897092.1| S-adenosyl-methyltransferase MraW [Burkholderia phytofirmans PsJN] gi|263446934|sp|B2SYY3|RSMH_BURPP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|187716644|gb|ACD17868.1| S-adenosyl-methyltransferase MraW [Burkholderia phytofirmans PsJN] Length = 317 Score = 342 bits (879), Expect = 3e-92, Method: Composition-based stats. Identities = 116/323 (35%), Positives = 179/323 (55%), Gaps = 20/323 (6%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M+ A+ + + H VLLE+ + L V +D TFG GG+SR + +IA D Sbjct: 1 MAPAMGNELQ-HRTVLLEEAVQALVTRADGVYVDGTFGRGGHSRLVLEKLAESGRLIAFD 59 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGD 122 +DP A++ Q+ +F + +F+ L+ + ++GV GV+ DLG+SS QID + Sbjct: 60 KDPLAIATAQQIA---DPRFGIVHESFASLRTAIAERGVGRVSGVLLDLGISSPQIDDPE 116 Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF+ GPLDMRM + G SA+D + +A V++LT ++ GEE+ A +IA A+V RR Sbjct: 117 RGFSFRADGPLDMRMDPTRGESAADWLARATVQELTEVIRDYGEERFAFQIAKALVARRA 176 Query: 182 S----APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 P +T +L+ ++ V + PATR+FQA+RI +N E+ EL L +A Sbjct: 177 ESDRLGPLVSTGELAQIVANVVKT-REKGKDPATRTFQAIRIHINQELAELQVVLEAALS 235 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVP 295 L+ GG L+V+SFHSLEDR+VK+F + + R + + + I + V Sbjct: 236 LLEQGGRLVVISFHSLEDRIVKRFMQAHASTPAVDRRLPIRAVDLPSPPLKIIGR--VFA 293 Query: 296 TQEDVAFNRRSRSAKLRAGMRTV 318 + +VA N R+RSA +R R Sbjct: 294 SDAEVAANPRARSAVMRVAERIA 316 >gi|294628857|ref|ZP_06707417.1| methylase MraW [Streptomyces sp. e14] gi|292832190|gb|EFF90539.1| methylase MraW [Streptomyces sp. e14] Length = 318 Score = 342 bits (879), Expect = 3e-92, Method: Composition-based stats. Identities = 123/310 (39%), Positives = 180/310 (58%), Gaps = 10/310 (3%) Query: 20 HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 HVPV+L++ + LL P PG V++D T G GG+S + +I LDRD A+ Sbjct: 6 HVPVMLQRCLDLLAPALERPGAVVVDCTLGLGGHSEALLTRFPEARLIGLDRDKEALRLS 65 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E + + ++ +L A + +L D + G V GV+FDLGVSSMQ+D DRGF++ + Sbjct: 66 GERLAPFGDRATLVHAVYDELPDVLDRLGIVRVQGVLFDLGVSSMQLDEADRGFAYAQDA 125 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + GISA++V+N +L RIL GEEKQA RI AIV+ R+ PF + Sbjct: 126 PLDMRMDQTTGISAAEVLNTYPPGELVRILRAYGEEKQAKRIVAAIVREREKEPFAHSAR 185 Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L LI+ + +K +PA R+FQALRI VN E+ L + + +A KAL GG + V+S Sbjct: 186 LVELIRDALPQAAKRTGGNPAKRTFQALRIEVNGELAVLERAVPAAVKALDVGGRIAVLS 245 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 + SLEDRLVK+ FA+ + + + + +T+ +PT+E++A NRR+ A Sbjct: 246 YQSLEDRLVKQVFAAGAATTAPPGLPVVPERYQPRLKLLTRGAELPTEEEIAENRRAAPA 305 Query: 310 KLRAGMRTVE 319 +LR R Sbjct: 306 RLRGVERVRA 315 >gi|304310311|ref|YP_003809909.1| Methyltransferase involved in cell envelope biogenesis [gamma proteobacterium HdN1] gi|301796044|emb|CBL44248.1| Methyltransferase involved in cell envelope biogenesis [gamma proteobacterium HdN1] Length = 310 Score = 342 bits (879), Expect = 4e-92, Method: Composition-based stats. Identities = 124/308 (40%), Positives = 182/308 (59%), Gaps = 12/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H PVLL++VI L + +D TFG GG++R+ S ++ D+DP A++ G + Sbjct: 6 HRPVLLQEVIENLLTDTAGIYVDGTFGRGGHARALLARLSADARLVGFDKDPEAIAVGLQ 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +FS+ +F+++ G V GV+ DLGVSS Q+D RGFSF GP Sbjct: 66 -LAAEDARFSIVHGSFAEIGTRPELAGLQGTVSGVLLDLGVSSPQLDDASRGFSFMNDGP 124 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ G SA+D +N + K + +L LGEE+ A RIA AIV +R+ +P TT+ L Sbjct: 125 LDMRMNNDAGESAADWLNHEDAKQIEWVLRELGEERFAGRIARAIVAQREMSPLCTTKQL 184 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + LI K V + ++ HPATRSFQA+RI+VN E+++L GL ++ + +K GG + V+SFH Sbjct: 185 ADLIYKAVPVREKHK-HPATRSFQAVRIWVNRELQDLEVGLAASLELVKVGGRIAVISFH 243 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPA-VFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK+FF R + + A + + KK V P+ ++VA N RSRSA Sbjct: 244 SLEDRIVKQFFEKHVKGEQLPRGLPVTGAALGIRLRHVAKK-VRPSDDEVAVNVRSRSAT 302 Query: 311 LRAGMRTV 318 LR + Sbjct: 303 LRVVEKIA 310 >gi|329907257|ref|ZP_08274578.1| S-adenosyl-methyltransferase MraW [Oxalobacteraceae bacterium IMCC9480] gi|327547063|gb|EGF31946.1| S-adenosyl-methyltransferase MraW [Oxalobacteraceae bacterium IMCC9480] Length = 316 Score = 342 bits (879), Expect = 4e-92, Method: Composition-based stats. Identities = 117/308 (37%), Positives = 172/308 (55%), Gaps = 16/308 (5%) Query: 20 HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73 H VLLE+ + L + LD TFG GG+SR G +IA D+DP A++ Sbjct: 7 HRTVLLEEAVEALALQGARTDGIYLDGTFGRGGHSRRILSALGAGGRLIAFDKDPQAIAS 66 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130 E +F + +F+ L + +GV DGV+ DLG+SS Q+D RGFSF+ Sbjct: 67 AGEIA---DPRFDIVHDSFATLDLALSARGVGLVDGVLLDLGISSPQVDDAARGFSFRAD 123 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 GPLDMRM + G+SA++ + +++ +++ GEE+ A +IA AI R P +T+ Sbjct: 124 GPLDMRMDTTRGLSAAEWLATETEQNIEKVIRNYGEERFAFQIAKAIAASRTIEPISSTR 183 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ ++ +TV + PATR+FQA+RI++N E+EEL GL+ A L G L+V+S Sbjct: 184 QLAQIVARTVKT-REKGKDPATRTFQAIRIYINQELEELEIGLQQAYARLAPHGRLVVIS 242 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK+F AS++ R I + P + K P+ E+VA N RSRS Sbjct: 243 FHSLEDRIVKRFMASKAHVEQPDRRLPIRAVDLPQPEMILISKA-KPSTEEVAGNPRSRS 301 Query: 309 AKLRAGMR 316 A +R R Sbjct: 302 AVMRVAQR 309 >gi|312140150|ref|YP_004007486.1| sam dependent methyltransferase mraw [Rhodococcus equi 103S] gi|311889489|emb|CBH48806.1| SAM dependent methyltransferase MraW [Rhodococcus equi 103S] Length = 390 Score = 342 bits (878), Expect = 4e-92, Method: Composition-based stats. Identities = 112/320 (35%), Positives = 175/320 (54%), Gaps = 18/320 (5%) Query: 20 HVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69 HVPVLL + LL PA G V++DAT G GG+S F + ++I LDRDP Sbjct: 71 HVPVLLNRADDLLGPAITADNPRGDGAVMIDATLGLGGHSEYFLRTYPGLHLIGLDRDPE 130 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD------GVVFDLGVSSMQIDCGDR 123 A+ + + Y ++ + + + + + G+D ++FDLGVSSMQ+D DR Sbjct: 131 ALRIASDRLAPYADRTTFVHTRYDGIVEALGQAGLDPVGSVHAILFDLGVSSMQLDEADR 190 Query: 124 GFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GF++ PLDMRM+ + GI+A++V+N + +L RIL GEE+ A RIA IV+RRQ Sbjct: 191 GFAYSIDAPLDMRMNPTTGITAAEVLNTYSHGELARILSTYGEERFAGRIASEIVRRRQK 250 Query: 183 APFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 PF T+ L L+ T+ + + HPA R+FQALR+ VN E++ L + + AL Sbjct: 251 QPFTTSAALVELLYDTIPAATRRTGGHPAKRTFQALRVEVNGELDSLRDAIPAGLDALAV 310 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 GG ++ +S+ SLEDR+VK+ A R+ + F+ +T+ ++ ++ Sbjct: 311 GGRVVFMSYQSLEDRVVKQELAPRAKSKTPEGLPVELPGMGPEFKILTRGAERASEAEIE 370 Query: 302 FNRRSRSAKLRAGMRTVERS 321 N R+ +LRA R ++ Sbjct: 371 DNPRAAPVRLRAAERIARKA 390 >gi|263460310|sp|A4TBF6|RSMH_MYCGI RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 317 Score = 342 bits (878), Expect = 4e-92, Method: Composition-based stats. Identities = 117/310 (37%), Positives = 172/310 (55%), Gaps = 10/310 (3%) Query: 18 GDHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVS 72 HVPVLL++ + LL P G ++DAT GAGG+S F +I LDRDP A+ Sbjct: 5 QPHVPVLLDRCVELLAPALTREGATLVDATLGAGGHSERFLTDFPGLRLIGLDRDPDALR 64 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQK 129 E + + ++ +L + + + D V D VD ++FDLGVSSMQ+D +RGFS+ Sbjct: 65 IAGERLAPFADRITLVRTRYDGIADAVRDAAGGSVDAILFDLGVSSMQLDRVERGFSYST 124 Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM + ++A+ V+N + + L R+L GEEK A RIA IV+RR PF TT Sbjct: 125 DAPLDMRMDSGADLTAAQVLNSYDERALARVLREYGEEKFAGRIAAFIVRRRAVTPFTTT 184 Query: 189 QDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L L+ + ++ HPA R+FQALRI VN E+E L + +A +AL+ G L V Sbjct: 185 GELVELLYDAIPAPARRTGGHPAKRTFQALRIEVNAELESLRSAIPAALQALRPHGRLAV 244 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +++ SLEDR+VK FA+ + + H F ++T+ E++ N RS Sbjct: 245 MAYQSLEDRIVKTAFAAATASRTPPGLPVELPGHGPEFVALTRGAERADAEEIERNPRSA 304 Query: 308 SAKLRAGMRT 317 +LRA + Sbjct: 305 PVRLRAVEKV 314 >gi|254449029|ref|ZP_05062483.1| S-adenosyl-methyltransferase MraW [gamma proteobacterium HTCC5015] gi|198261423|gb|EDY85714.1| S-adenosyl-methyltransferase MraW [gamma proteobacterium HTCC5015] Length = 309 Score = 342 bits (878), Expect = 4e-92, Method: Composition-based stats. Identities = 122/306 (39%), Positives = 168/306 (54%), Gaps = 12/306 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 +HVPVLL + I L V LD TFG GG+S + + A+DRD AV Q Sbjct: 6 EHVPVLLAEAIEGLRIEENGVYLDGTFGRGGHSAAILSQLGVDGQLHAIDRDRAAVDVAQ 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGV----DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + +FS+ FSQL Y +G+ +GV+ D+GVSS QID RGFSFQ G Sbjct: 66 QRFAE-DARFSIHHGEFSQLDQYCEQRGLAGRLNGVLLDIGVSSPQIDDPGRGFSFQFDG 124 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + G +A+ + A ++ R+L GEE+ A RIA AI + Q +TTQ Sbjct: 125 PLDMRMDQTRGETAAQWLVSAEASEIARVLKEFGEERNAKRIASAIKRTLQERSIETTQG 184 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L ++I+ ++ HPATRSFQALRI VN+E+ L + L +A + L GG L V+SF Sbjct: 185 LVAVIESATRV-RDRHKHPATRSFQALRIQVNDEMGALRRALDAAVRMLAPGGRLAVISF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDR+VK+F S R +P +S+ K + + ++ N R+RSA Sbjct: 244 HSLEDRMVKRFIRDESTPREVARG-LPQKTDHIRLKSV-GKAIKAGESELKKNPRARSAV 301 Query: 311 LRAGMR 316 LR R Sbjct: 302 LRVAER 307 >gi|87199147|ref|YP_496404.1| methyltransferase [Novosphingobium aromaticivorans DSM 12444] gi|123736248|sp|Q2G9A3|RSMH_NOVAD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|87134828|gb|ABD25570.1| methyltransferase [Novosphingobium aromaticivorans DSM 12444] Length = 329 Score = 342 bits (878), Expect = 4e-92, Method: Composition-based stats. Identities = 142/327 (43%), Positives = 199/327 (60%), Gaps = 17/327 (5%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDP 68 MS+ + H+PVLLE+V+A L+P PG +I+DATFGAGGY+R G+ V A DRDP Sbjct: 1 MSAETG-SRAPHIPVLLEEVVAALDPKPGDLIVDATFGAGGYTRRLLDAGATVHAFDRDP 59 Query: 69 FAVSCGQETMRDYK--EQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDR 123 A++ G+ + L FS++ + + + G V GVVFD+GVSSMQ+D R Sbjct: 60 DAIAAGKLWGETCGKEPRLVLHPRRFSEIAEGLAEAGIAGVQGVVFDIGVSSMQLDQAAR 119 Query: 124 GFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 GF+F GPLDMRMS G SA+D +N+A+ ++ +L GEE+Q+ RIA AIV R Sbjct: 120 GFAFSSDGPLDMRMSQEGPSAADFLNEADEGEIADVLYRYGEERQSRRIARAIVAAR--- 176 Query: 184 PFQTTQDLSSLIQKTVYFSKNNR-----IHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 P TT +++++K + + + + PATRSFQA+RI VN E++EL QGL +AEK Sbjct: 177 PLTTTAQFAAVVRKALGYRPDIKGPKAPKDPATRSFQAVRIHVNGELDELVQGLAAAEKV 236 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPT 296 L GG + VVSFHSLEDR+VK+F +G V A +P + AVF+ + + PT Sbjct: 237 LVPGGRIAVVSFHSLEDRIVKQFLREGAGAVPAGSRHLPQLESKVQAVFEKPS-GAIRPT 295 Query: 297 QEDVAFNRRSRSAKLRAGMRTVERSIE 323 E+ A N R+RSA LR +RT + Sbjct: 296 PEEEARNPRARSATLRCAVRTAAPARA 322 >gi|308048060|ref|YP_003911626.1| S-adenosyl-methyltransferase MraW [Ferrimonas balearica DSM 9799] gi|307630250|gb|ADN74552.1| S-adenosyl-methyltransferase MraW [Ferrimonas balearica DSM 9799] Length = 315 Score = 342 bits (878), Expect = 5e-92, Method: Composition-based stats. Identities = 120/309 (38%), Positives = 172/309 (55%), Gaps = 13/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H+ VLL++ + L P + +D TFG GG+SR +I +DRDP AV+ Q+ Sbjct: 7 HITVLLDEAVNGLQLKPDGIYVDGTFGRGGHSRHILSQLGPNGRLIGIDRDPQAVAVAQQ 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F + FS + +YV G +DGV+ DLGVSS Q+D +RGFSF + GP Sbjct: 67 LAAE-DPRFQIVHGPFSGIAEYVEALGLTGQIDGVLLDLGVSSPQLDDAERGFSFLRDGP 125 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTTQD 190 LDMRM S G +A++ + +A D+ +L GEEK A IA IV+ P T Sbjct: 126 LDMRMDNSRGETAAEWLARAEANDIAWVLKTFGEEKFARPIARKIVEHIAAGEPMDRTSH 185 Query: 191 LSSLIQKTVYFSKNN-RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ LI+K K + HPATRSFQA+RI++N+E+EE+ + L A +ALK GG L V+S Sbjct: 186 LAGLIEKMTPKHKRDQGKHPATRSFQAIRIYINSELEEIEKALMGALEALKPGGRLSVIS 245 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI--TKKVVVPTQEDVAFNRRSR 307 FHSLEDRLVK+F S + + + + K + P+ +V N R+R Sbjct: 246 FHSLEDRLVKRFMRRESQGEPVPHGLPLTEEQMKQTRRLKTVGKALKPSDTEVEDNTRAR 305 Query: 308 SAKLRAGMR 316 S+ LR G + Sbjct: 306 SSVLRVGEK 314 >gi|116688575|ref|YP_834198.1| S-adenosyl-methyltransferase MraW [Burkholderia cenocepacia HI2424] gi|170731875|ref|YP_001763822.1| S-adenosyl-methyltransferase MraW [Burkholderia cenocepacia MC0-3] gi|263446896|sp|B1JUW4|RSMH_BURCC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446902|sp|A0K478|RSMH_BURCH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|116646664|gb|ABK07305.1| S-adenosyl-methyltransferase MraW [Burkholderia cenocepacia HI2424] gi|169815117|gb|ACA89700.1| S-adenosyl-methyltransferase MraW [Burkholderia cenocepacia MC0-3] Length = 313 Score = 342 bits (878), Expect = 5e-92, Method: Composition-based stats. Identities = 115/311 (36%), Positives = 175/311 (56%), Gaps = 19/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H VLL++ + L P V +D TFG GG+SR+ +IA D+DP A+ Q Sbjct: 7 HRTVLLDEAVESLVTRPDGVYVDGTFGRGGHSRAVLARLASAGRLIAFDKDPRAIETAQ- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +FS+ +F+ ++D + +GV GV+ DLGVSS Q+D RGFSF+ GPL Sbjct: 66 --GIEDARFSIVHDSFASMRDALAARGVEKVSGVLLDLGVSSPQVDDPARGFSFRADGPL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS----APFQTT 188 DMRM + G SA++ + +A+V++LT ++ GEE+ A +IA A+V RR P TT Sbjct: 124 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDTT 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ ++ V + PATR+FQA+RI VN E+ +L L +A L+ GG L+V+ Sbjct: 184 GELAQIVGHVVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVI 242 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDVAFNRRS 306 SFHSLEDR+VK+F + + R + + + I++ P++ +VA N R+ Sbjct: 243 SFHSLEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPPLKIISR--QFPSEAEVAANPRA 300 Query: 307 RSAKLRAGMRT 317 RSA +R R Sbjct: 301 RSAVMRIAERV 311 >gi|330815435|ref|YP_004359140.1| S-adenosyl-methyltransferase MraW [Burkholderia gladioli BSR3] gi|327367828|gb|AEA59184.1| S-adenosyl-methyltransferase MraW [Burkholderia gladioli BSR3] Length = 313 Score = 342 bits (878), Expect = 5e-92, Method: Composition-based stats. Identities = 116/312 (37%), Positives = 176/312 (56%), Gaps = 19/312 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VLL++ + L P + +D TFG GG+SR G +IA D+DP A+ Sbjct: 7 HRTVLLDEAVDALVTRPDGIYVDGTFGRGGHSRLVLDRLAEGGRLIAFDKDPLAIETAS- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 R +FS+ +F+ L + ++GV GV+ DLGVSS QID +RGFSF+ +GPL Sbjct: 66 --RVGDTRFSIVHDSFASLGGALAERGVGRVTGVLLDLGVSSPQIDDPERGFSFRANGPL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS----APFQTT 188 DMRM + G SA+D + +A++++LT ++ GEE+ A +IA A+V RR P +T Sbjct: 124 DMRMDTTRGESAADWLARASLQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDST 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ ++ V + PATR+FQA+RI VN E+ +L L SA +L+ GG L+V+ Sbjct: 184 GELAQIVGHAVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLESALSSLEQGGRLVVI 242 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDVAFNRRS 306 SFHSLEDR+VK+F + + R + + + + +K P + +VA N R+ Sbjct: 243 SFHSLEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPPLKLLGRK--FPGEAEVAANPRA 300 Query: 307 RSAKLRAGMRTV 318 RSA +R R Sbjct: 301 RSAVMRIAERVA 312 >gi|297620593|ref|YP_003708730.1| S-adenosyl-methyltransferase [Waddlia chondrophila WSU 86-1044] gi|297375894|gb|ADI37724.1| S-adenosyl-methyltransferase [Waddlia chondrophila WSU 86-1044] Length = 306 Score = 342 bits (878), Expect = 5e-92, Method: Composition-based stats. Identities = 109/306 (35%), Positives = 166/306 (54%), Gaps = 11/306 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCGQ 75 H+ VLLE+V + K +D T GAGG+S + + +D+DP A+ + Sbjct: 3 PHLSVLLEEVAESFSDVDLKRFVDGTLGAGGHSAEILSAHPEIQRFLGIDQDPDALEIAR 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + + E+ + FS L++++ G VDG++ DLGVSSMQ D +RGFS Q+ GP Sbjct: 63 ERLSKWSEKVMFQRGNFSDLKEHLAQNGLEKVDGILLDLGVSSMQFDRPERGFSLQQDGP 122 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ ++A+++VN +L + GEEK+ A A+ + P T +L Sbjct: 123 LDMRMNPEEPLTAAEIVNTWPEAELGDLFKKYGEEKRWRAAARAVA---AARPISRTLEL 179 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++ + + +IHPAT FQALR+ VN EIE + + + A L GG L V+SFH Sbjct: 180 VEVLTSVLGRPRKGKIHPATLIFQALRLAVNREIERIEEVIPQAIGCLNPGGRLAVISFH 239 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPS-NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK+ F + + R + + V IT+K +VP + +V N RSRS+K Sbjct: 240 SLEDRIVKRQFRYLADDKESTRGVGGVFISKEPVVNLITRKPIVPGKAEVERNPRSRSSK 299 Query: 311 LRAGMR 316 LR + Sbjct: 300 LRVVEK 305 >gi|239940578|ref|ZP_04692515.1| putative S-adenosylmethionine-dependent methyltransferase [Streptomyces roseosporus NRRL 15998] gi|239987061|ref|ZP_04707725.1| putative S-adenosylmethionine-dependent methyltransferase [Streptomyces roseosporus NRRL 11379] gi|291444013|ref|ZP_06583403.1| S-adenosylmethionine-dependent methyltransferase [Streptomyces roseosporus NRRL 15998] gi|291346960|gb|EFE73864.1| S-adenosylmethionine-dependent methyltransferase [Streptomyces roseosporus NRRL 15998] Length = 313 Score = 342 bits (878), Expect = 5e-92, Method: Composition-based stats. Identities = 120/312 (38%), Positives = 177/312 (56%), Gaps = 13/312 (4%) Query: 24 LLEKVIALLNPA------PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQ 75 +L++ + LL PA P V++D T G GG+S + +IALDRD A+ Sbjct: 2 MLQRCLDLLAPALQDPAHPDPVVVDCTLGLGGHSEALLAAFPTARLIALDRDKEALRLSG 61 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + Y ++ +L A + +L + + G V GV+FDLGVSSMQ+D DRGF++ + P Sbjct: 62 ERLAPYGDRATLVHAVYDELPEVLERLGIPKVQGVLFDLGVSSMQLDEADRGFAYAQDAP 121 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S G+ A++V+N +L RIL GEEKQA RI AIV+ R+ PF + L Sbjct: 122 LDMRMDQSTGMGAAEVLNTYPPGELVRILRAYGEEKQAKRIVSAIVREREKEPFSNSARL 181 Query: 192 SSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 LI+ + +K +PA R+FQALRI VN E+ L + + +A +L GG + V+S+ Sbjct: 182 VELIRDALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVDSLAVGGRIAVLSY 241 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDRLVK+ FA+ + + + + +T+ +PT+E+VA NRR+ A+ Sbjct: 242 HSLEDRLVKQVFAAGAANTAPPGLPVVPERYQPRLKQLTRGAELPTEEEVAENRRAAPAR 301 Query: 311 LRAGMRTVERSI 322 LR R E Sbjct: 302 LRGAQRIREEER 313 >gi|190571322|ref|YP_001975680.1| S-adenosyl-methyltransferase MraW [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018718|ref|ZP_03334526.1| S-adenosyl-methyltransferase MraW [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|226709924|sp|B3CMB5|RSMH_WOLPP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|190357594|emb|CAQ55035.1| S-adenosyl-methyltransferase MraW [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995669|gb|EEB56309.1| S-adenosyl-methyltransferase MraW [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 294 Score = 342 bits (878), Expect = 5e-92, Method: Composition-based stats. Identities = 119/302 (39%), Positives = 181/302 (59%), Gaps = 17/302 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQETM 78 H+PVLL++++ L+P G + +DATFGAGGYS++ + V A+DRD + Sbjct: 3 HIPVLLKEMLLQLSPHSGGIYVDATFGAGGYSKAILESADCKVYAVDRDETVTKFYDDLN 62 Query: 79 RDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 Y + LF FS +++ + G++G+VFD+GVSSMQ+D GDRGFSF + GPL+M Sbjct: 63 VKYPNRIKLFIEKFSNIKNLLDSNNIKGINGIVFDVGVSSMQLDNGDRGFSFLRDGPLNM 122 Query: 136 RMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 M S ++AS VN +++ + G E+ + RIA AIV R+ +TT +L+ + Sbjct: 123 SMDNYSHMNASTFVNALREEEIANTIYNYGGERHSRRIARAIVNARKKKIIKTTFELADI 182 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 ++ V+ K ++I PATR+FQA+RI+VN+E+ EL +G+++A + L G LIVV+FHSLE Sbjct: 183 VRSVVFRGK-SKIDPATRTFQAIRIWVNDELGELEKGIKAASEILSENGKLIVVTFHSLE 241 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 DR+VK F + F + KKV+ + E++ N R+RSAKLRA Sbjct: 242 DRIVKTVFKD-----------LCEPGSTKTFSLLNKKVIKASSEEINVNPRARSAKLRAI 290 Query: 315 MR 316 R Sbjct: 291 QR 292 >gi|163752984|ref|ZP_02160108.1| S-adenosylmethionine methyltransferase [Kordia algicida OT-1] gi|161326716|gb|EDP98041.1| S-adenosylmethionine methyltransferase [Kordia algicida OT-1] Length = 298 Score = 342 bits (878), Expect = 5e-92, Method: Composition-based stats. Identities = 106/304 (34%), Positives = 164/304 (53%), Gaps = 17/304 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H PVLL++ + LN V +D TFG GG+S+ + A D+D A+ + Sbjct: 4 HNPVLLKETVDGLNIKEDGVYVDVTFGGGGHSKEILNRLGENGKLYAFDQDQDALENTID 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +F+L F L+ ++ G VDG++ D GVSS Q D +RGFS + L Sbjct: 64 -----DSRFTLIHQNFRHLKKFLRFYGIKKVDGILGDFGVSSHQFDVAERGFSLRFEADL 118 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM G ISA VVN+ + +DL IL + GE + A IA IV R P +TT++L Sbjct: 119 DMRMDQEGEISAYHVVNEYSEEDLRSILSLYGEVRNAKGIAAQIVSARSEEPIKTTEELR 178 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +Q+ + + +++ + +QA+RI VN EIE L + L ++ L+ GG L ++S+HS Sbjct: 179 VALQRFLPKHREHKV--LAQIYQAIRIEVNQEIEVLKEFLLQTQELLEKGGRLSLISYHS 236 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDRLVK++ + + + P F+ + K+++P+ E++ N R+RSAKLR Sbjct: 237 LEDRLVKRYIRNGLFEGEPEKDFYGRVEVP--FKKV-GKLIIPSNEEIKTNNRARSAKLR 293 Query: 313 AGMR 316 R Sbjct: 294 IAER 297 >gi|299139518|ref|ZP_07032692.1| S-adenosyl-methyltransferase MraW [Acidobacterium sp. MP5ACTX8] gi|298598446|gb|EFI54610.1| S-adenosyl-methyltransferase MraW [Acidobacterium sp. MP5ACTX8] Length = 324 Score = 342 bits (877), Expect = 5e-92, Method: Composition-based stats. Identities = 127/310 (40%), Positives = 177/310 (57%), Gaps = 28/310 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 HVPVLLE+ + L PG V +DAT G GG+S + + +I DRDP A++ Q Sbjct: 20 HVPVLLEESLKYLKVRPGGVYVDATLGLGGHSAAIARQLGGAGKLICFDRDPEAMAKAQA 79 Query: 77 TMRDYKE-------QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 + E Q FS++ + V +DG++ D GVSS+Q+D RGFSF+ Sbjct: 80 RLAAVAEELGPEMPQVRYVPRAFSEIDEEVEPNSLDGLLADFGVSSLQLDEAHRGFSFRT 139 Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM S ++A VVNQA+ +DL ++ GEE+++ RIA AIV+ R P +TT Sbjct: 140 DGPLDMRMDSRSELTAQQVVNQADEEDLANLIYEFGEERRSRRIARAIVRAR---PIETT 196 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ +I K ++IHPATR+FQALRI VN+EI ++ L SAE LK GG ++++ Sbjct: 197 AELARVISAVTPSMKGDKIHPATRTFQALRIRVNDEIGQIQSLLHSAESLLKPGGRVVLI 256 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDR VK F A + +TKK VV +++ N RSRS Sbjct: 257 SFHSLEDRPVKDAFRE--------------GAKAGRLEILTKKPVVAGEQESLRNPRSRS 302 Query: 309 AKLRAGMRTV 318 AKLRA + + Sbjct: 303 AKLRAAEKVL 312 >gi|169831601|ref|YP_001717583.1| S-adenosyl-methyltransferase MraW [Candidatus Desulforudis audaxviator MP104C] gi|263446209|sp|B1I4D9|RSMH_DESAP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|169638445|gb|ACA59951.1| S-adenosyl-methyltransferase MraW [Candidatus Desulforudis audaxviator MP104C] Length = 324 Score = 342 bits (877), Expect = 5e-92, Method: Composition-based stats. Identities = 110/310 (35%), Positives = 168/310 (54%), Gaps = 9/310 (2%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVS 72 T H PV+L +V+ L+P PG +D T G GG++ + ++ +DRD A++ Sbjct: 4 TGFRHQPVMLREVLEWLDPKPGGTYVDCTLGGGGHALGVLERIGGRGLLVGIDRDADALA 63 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 + Y + L QA F +L + V G+++DLGVSS Q+D RGF +Q+ Sbjct: 64 AAAFRLAGYGDGVRLVQADFRELAAVLRRLETGPVQGILYDLGVSSHQLDTASRGFGYQQ 123 Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM G ++A+D+VN+ +L+ ++ GEE+ + RIA I + R+ P TT Sbjct: 124 DAPLDMRMDPGGGVTAADLVNRLPEDELSDLIKAYGEERWSRRIAAFIARERKREPILTT 183 Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 L+ +I++ V + HPA R+FQALRI VN+E+ L L A L AGG ++V Sbjct: 184 GRLAEVIKEAVPARARRTGPHPARRTFQALRIAVNDELGALKTSLHQAVDLLDAGGRVVV 243 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 +S+HSLEDRLVK F + + +T + VP ++++A N R+ Sbjct: 244 LSYHSLEDRLVKDTFREFAVHCKCPPGLPECRCGVVPRLDILTSRPRVPGEDEIAANPRA 303 Query: 307 RSAKLRAGMR 316 RSAKLRA + Sbjct: 304 RSAKLRAARK 313 >gi|296160551|ref|ZP_06843367.1| S-adenosyl-methyltransferase MraW [Burkholderia sp. Ch1-1] gi|295889300|gb|EFG69102.1| S-adenosyl-methyltransferase MraW [Burkholderia sp. Ch1-1] Length = 313 Score = 342 bits (877), Expect = 5e-92, Method: Composition-based stats. Identities = 114/312 (36%), Positives = 173/312 (55%), Gaps = 19/312 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H VLLE+ + L V +D TFG GG+SR + +IA D+DP A++ Q+ Sbjct: 7 HRTVLLEEAVQALVTRADGVYVDGTFGRGGHSRLVLEKLGESGRLIAFDKDPLAIATAQQ 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +F + +F+ L+ + ++GV GV+ DLGVSS Q+D +RGFSF+ GPL Sbjct: 67 I---TDPRFGIVHESFASLRTAMAERGVGRVSGVLLDLGVSSPQVDDPERGFSFRADGPL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS----APFQTT 188 DMRM + G SA+D + +A V++LT ++ GEE+ A +IA A+V RR P +T Sbjct: 124 DMRMDPTRGESAADWLARATVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLVST 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ ++ V + PATR+FQA+RI +N E+ EL L +A L+ GG L+V+ Sbjct: 184 GELAQIVANVVKT-REKGKDPATRTFQAIRIHINQELAELQVVLEAALSLLEQGGRLVVI 242 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDVAFNRRS 306 SFHSLEDR+VK+F + + R + + + I + V + +VA N R+ Sbjct: 243 SFHSLEDRIVKRFMQAHASTPAVDRRLPIRAVDLPSPPLKIIGR--VFASDAEVAANPRA 300 Query: 307 RSAKLRAGMRTV 318 RSA +R R Sbjct: 301 RSAVMRVAERIA 312 >gi|307151535|ref|YP_003886919.1| S-adenosyl-methyltransferase MraW [Cyanothece sp. PCC 7822] gi|306981763|gb|ADN13644.1| S-adenosyl-methyltransferase MraW [Cyanothece sp. PCC 7822] Length = 299 Score = 342 bits (877), Expect = 5e-92, Method: Composition-based stats. Identities = 126/318 (39%), Positives = 185/318 (58%), Gaps = 28/318 (8%) Query: 4 KSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI- 62 MS+A T +HVPVL ++I+ LN PG LDAT GAGG++R + +NV Sbjct: 2 TKVTQMSTADFST-FNHVPVLTRELISGLNICPGGHYLDATVGAGGHTRKLLESYANVRV 60 Query: 63 -ALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDC 120 A+DRD A++ + +Y ++ + +Q F+ + ++ DG++ DLGVSS Q+D Sbjct: 61 TAIDRDSTAIAAAAANLAEYNIDRLTFWQGNFANYE--AKEETFDGIIADLGVSSPQLDH 118 Query: 121 GDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFSF+ PLDMRM C ++A+ V+N + +LT+I GEE+ + +IA IVK+ Sbjct: 119 PERGFSFRLEAPLDMRMDCGQSLTAATVINTWDETELTKIFYNYGEERLSRQIAKQIVKQ 178 Query: 180 RQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R PF +T +L+++I ++V + RIHPATR FQALRI VN E+E L L + Sbjct: 179 R---PFYSTTELANVIARSVPPKYRYGRIHPATRVFQALRIAVNQELESLLSFLIKSPYW 235 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 LK G++ V+SFHSLEDR+VK F S + + +TKK ++P + Sbjct: 236 LKRDGIIGVISFHSLEDRIVKHQFRSS-----------------PLLKVLTKKPIIPQSD 278 Query: 299 DVAFNRRSRSAKLRAGMR 316 + A N RSRSAKLR R Sbjct: 279 EQAKNPRSRSAKLRLAQR 296 >gi|257061938|ref|YP_003139826.1| S-adenosyl-methyltransferase MraW [Cyanothece sp. PCC 8802] gi|256592104|gb|ACV02991.1| S-adenosyl-methyltransferase MraW [Cyanothece sp. PCC 8802] Length = 304 Score = 342 bits (877), Expect = 6e-92, Method: Composition-based stats. Identities = 113/304 (37%), Positives = 167/304 (54%), Gaps = 27/304 (8%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCGQET 77 H+ VL +++IA LN PG LDAT G+GG+SR +V A+DRD A++ Sbjct: 22 HISVLSQEMIAGLNIIPGGHYLDATVGSGGHSRLILATFPDVRITAIDRDSQAIAAAASN 81 Query: 78 MRDYK-EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + + ++ +Q F+ + + G++ DLGVSS Q D +RGFSF+ G LDMR Sbjct: 82 LAELGSDRLKFWQGNFADYPGKIAE--FSGIIADLGVSSPQFDFPERGFSFRHEGALDMR 139 Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M + ++A +++NQ + L + GEE+++ +A IV++R PF+TT L+ I Sbjct: 140 MDQTQSLTAGEIINQWSETALADLFYQYGEERRSRSMAKHIVQQR---PFKTTTQLAEAI 196 Query: 196 QKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 +TV + RIHPATR FQALRI VN E+ L + L A + L+ GG + ++SFHSLE Sbjct: 197 AQTVPPKYRYGRIHPATRVFQALRIAVNEELSSLERFLDRAPQWLQPGGRIGIISFHSLE 256 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 DR+VK F +TKK ++P +E+ N RSRSAKLR Sbjct: 257 DRIVKYRFRDS-----------------CWLTVMTKKPIIPQREEQLKNPRSRSAKLRLA 299 Query: 315 MRTV 318 R + Sbjct: 300 ERNL 303 >gi|83720235|ref|YP_441658.1| S-adenosyl-methyltransferase MraW [Burkholderia thailandensis E264] gi|167580465|ref|ZP_02373339.1| S-adenosyl-methyltransferase MraW [Burkholderia thailandensis TXDOH] gi|167618573|ref|ZP_02387204.1| S-adenosyl-methyltransferase MraW [Burkholderia thailandensis Bt4] gi|257137827|ref|ZP_05586089.1| S-adenosyl-methyltransferase MraW [Burkholderia thailandensis E264] gi|123537607|sp|Q2SZJ1|RSMH_BURTA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|83654060|gb|ABC38123.1| S-adenosyl-methyltransferase MraW [Burkholderia thailandensis E264] Length = 313 Score = 342 bits (877), Expect = 6e-92, Method: Composition-based stats. Identities = 111/312 (35%), Positives = 173/312 (55%), Gaps = 19/312 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H VLL++ + L P V +D TFG GG+SR+ +IA D+DP A+ Sbjct: 7 HRTVLLDEAVDALVTRPDGVYVDGTFGRGGHSRAVLARLSDAGRLIAFDKDPRAIETAS- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +F + +F+ ++ + +GV GV+ DLGVSS Q+D +RGFSF+ +GPL Sbjct: 66 --GIEDARFEIVHDSFAAMKGALDARGVGRVSGVLLDLGVSSPQVDDPERGFSFRANGPL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS----APFQTT 188 DMRM + G SA++ + +A+V++LT ++ GEE+ A +IA AIV RR P +T Sbjct: 124 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRLGPLDST 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ ++ V + PATR+FQA+RI VN E+ +L L +A L+ GG L+V+ Sbjct: 184 GELAQIVGHVVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLEAALSLLEQGGRLVVI 242 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDVAFNRRS 306 SFHSLEDR+VK+F + + R + + + + + + P+ +VA N R+ Sbjct: 243 SFHSLEDRIVKRFLQTHASAPAVDRRLPIRAVDLPSPPLKLLGR--MFPSDAEVAANPRA 300 Query: 307 RSAKLRAGMRTV 318 RSA +R R Sbjct: 301 RSAVMRIAERVA 312 >gi|145595735|ref|YP_001160032.1| S-adenosyl-methyltransferase MraW [Salinispora tropica CNB-440] gi|262826474|sp|A4X9S3|RSMH_SALTO RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|145305072|gb|ABP55654.1| S-adenosyl-methyltransferase MraW [Salinispora tropica CNB-440] Length = 371 Score = 342 bits (877), Expect = 6e-92, Method: Composition-based stats. Identities = 118/313 (37%), Positives = 180/313 (57%), Gaps = 14/313 (4%) Query: 18 GDHVPVLLEKVIALLNPAPGK-------VILDATFGAGGYSRSFCKMGSN--VIALDRDP 68 G HVPVLLE+ + LL+PA + V +DAT G GG++ + ++ LDRD Sbjct: 6 GAHVPVLLERCLELLSPALDRTGQTGRTVYVDATLGLGGHAEAILTAHPRTMLVGLDRDT 65 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGF 125 A++ + + + ++ L A + +L D + G VDG++FDLGVSS+Q+D DRGF Sbjct: 66 EALAHARVRLARFADRVHLEHAVYDELPDVLDRIGHPVVDGILFDLGVSSLQLDAPDRGF 125 Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 ++ + PLDMRM S G++A +VVN + +L R+L + GEEK ASRIA AIV+ R AP Sbjct: 126 AYAQDAPLDMRMDQSRGVTAEEVVNSYSHPELARVLRVYGEEKFASRIASAIVRERDRAP 185 Query: 185 FQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 ++ L+ L+++ + ++ HPA R+FQALRI VN E+ L L +A L G Sbjct: 186 ITSSAQLAELVRQAIPAPARRTGGHPAKRTFQALRIEVNRELAALETALPAALDRLAIEG 245 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 ++V+S+HSLEDRL K A R + + F+ +++ +P + +VA N Sbjct: 246 RMVVLSYHSLEDRLTKVALADRVRSKGPIDLPVELPGTGPTFRLLSRGAELPGEAEVAVN 305 Query: 304 RRSRSAKLRAGMR 316 R+ S +LRA R Sbjct: 306 PRAASVRLRAAER 318 >gi|254423474|ref|ZP_05037192.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. PCC 7335] gi|196190963|gb|EDX85927.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. PCC 7335] Length = 293 Score = 342 bits (877), Expect = 6e-92, Method: Composition-based stats. Identities = 117/312 (37%), Positives = 168/312 (53%), Gaps = 26/312 (8%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDR 66 M + HVPVL E+V+A L G LDAT G GG+S K N ++ALD+ Sbjct: 1 MPEDVTAQPFFHVPVLSEQVLAGLQIEDGGRYLDATVGGGGHSELILKAARNVELVALDQ 60 Query: 67 DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126 D A+S ++ + ++++ + FS+ + + DG++ D+GVSS Q+D RGFS Sbjct: 61 DLQALSAAKKRLEVWRDRTTFIHTNFSRYEP--GGRKFDGILADIGVSSTQLDQAQRGFS 118 Query: 127 FQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 F++ PLDMRM + A ++VN + K + + GEE+ + RIA IV++R PF Sbjct: 119 FRQEAPLDMRMDSTQELMAKEIVNHWDEKAIADTIYEYGEERLSRRIARRIVEKR---PF 175 Query: 186 QTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 TT +L+ + ++ RIHPATR+FQALRI VN E++ L L A L GG Sbjct: 176 STTTELAWEVAGAYPAKARHGRIHPATRTFQALRIAVNGELDVLKTLLAKAPDWLNPGGR 235 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 L ++SFHSLEDR+VK + + ITKK +V T ++V N Sbjct: 236 LAIISFHSLEDRIVKYAYRGDE-----------------RLEIITKKPLVATDQEVKENA 278 Query: 305 RSRSAKLRAGMR 316 RSRSAKLR R Sbjct: 279 RSRSAKLRIAER 290 >gi|238898853|ref|YP_002924535.1| S-adenosyl-dependent methyl transferase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|263456095|sp|C4K744|RSMH_HAMD5 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|229466613|gb|ACQ68387.1| S-adenosyl-dependent methyl transferase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 311 Score = 342 bits (877), Expect = 6e-92, Method: Composition-based stats. Identities = 124/313 (39%), Positives = 183/313 (58%), Gaps = 19/313 (6%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCG 74 H VLL + + LN + +DATFG GG+S +I++DRDP AV Sbjct: 4 NQHKTVLLYEAVDSLNIQNDGIYIDATFGRGGHSSLILSRLGSQGKLISIDRDPEAVKKA 63 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + M+D +FS Q +FS L YV ++G++FDLGVSS Q+D RGFSF + Sbjct: 64 -KLMKD--PRFSFIQGSFSDLYHYVKKLDLMGRINGLLFDLGVSSPQLDDAKRGFSFMRD 120 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 GPLDMRM S G+SA++ + + NV++L +L GEE+ ++R+A AIV+R + P ++T+ Sbjct: 121 GPLDMRMDPSRGLSAAEWLMKVNVENLAWVLKNFGEERFSTRLARAIVERNRLNPIKSTK 180 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 +L+ LI + +N+ HPATRSFQA+RI++NNE++E++ L +A + L G L VVS Sbjct: 181 ELADLISHVIPV-RNHHKHPATRSFQAIRIYINNELQEISSALNAALEILSLGARLSVVS 239 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNR 304 FHSLEDR+VK F S +R + + + I K +P+Q++V N Sbjct: 240 FHSLEDRIVKNFIRQHSRGPQILRGLPLTEIQIQSMWQPKLKLIGK--TMPSQKEVLDNP 297 Query: 305 RSRSAKLRAGMRT 317 RSRS+ LR R Sbjct: 298 RSRSSILRFAERI 310 >gi|295677772|ref|YP_003606296.1| S-adenosyl-methyltransferase MraW [Burkholderia sp. CCGE1002] gi|295437615|gb|ADG16785.1| S-adenosyl-methyltransferase MraW [Burkholderia sp. CCGE1002] Length = 313 Score = 342 bits (877), Expect = 6e-92, Method: Composition-based stats. Identities = 113/312 (36%), Positives = 172/312 (55%), Gaps = 19/312 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H VLL + + L +D TFG GG+SR + +IA D+DP A++ Q+ Sbjct: 7 HRTVLLNEAVDALVTRADGTYVDGTFGRGGHSRLVLERLGEAGRLIAFDKDPLAIATAQK 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +F++ +F+ L+ + ++GV GV+ DLGVSS Q+D +RGFSF+ GPL Sbjct: 67 IA---DPRFAIVHESFASLRAAMAERGVGRVSGVLLDLGVSSPQVDDPERGFSFRADGPL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS----APFQTT 188 DMRM + G SA+D + +A V++LT ++ GEE+ A +IA A+V RR P +T Sbjct: 124 DMRMDPTRGESAADWLARATVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLVST 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ ++ V + PATR+FQA+RI VN E+ EL L +A L+ GG L+V+ Sbjct: 184 GELAQIVANVVKT-REKGKDPATRTFQAIRIHVNQELAELQVVLEAALSLLEQGGRLVVI 242 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDVAFNRRS 306 SFHSLEDR+VK+F + + R + + + I + V + +VA N R+ Sbjct: 243 SFHSLEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPPLKIIGR--VFASDAEVADNPRA 300 Query: 307 RSAKLRAGMRTV 318 RSA +R R Sbjct: 301 RSAVMRVAERIA 312 >gi|186477429|ref|YP_001858899.1| S-adenosyl-methyltransferase MraW [Burkholderia phymatum STM815] gi|263446931|sp|B2JHG8|RSMH_BURP8 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|184193888|gb|ACC71853.1| S-adenosyl-methyltransferase MraW [Burkholderia phymatum STM815] Length = 317 Score = 342 bits (877), Expect = 6e-92, Method: Composition-based stats. Identities = 115/323 (35%), Positives = 179/323 (55%), Gaps = 20/323 (6%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 M+ A+ + + H VLLE+ + L + +D TFG GG+SR+ +IA D Sbjct: 1 MAPAMGNELQ-HRTVLLEEAVNALVTRVDGIYIDGTFGRGGHSRAVLAKLGEAGRLIAFD 59 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGD 122 +DP A++ Q+ +F + +F+ L+D + ++ V GV+ DLGVSS Q D + Sbjct: 60 KDPLAIATAQQVA---DPRFEIVHESFASLRDAMSERAVGRVSGVLLDLGVSSPQFDDPE 116 Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF+ GPLDMRM + G SA+D + +A V+++T ++ GEE+ A +IA A+V RR Sbjct: 117 RGFSFRADGPLDMRMDPTRGESAADWLARATVQEMTEVIRDYGEERFAFQIAKALVARRA 176 Query: 182 S----APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 P +T +L+ ++ V + PATR+FQA+RI +N E+ EL L +A Sbjct: 177 ESDRLGPLVSTGELAQIVANVVKT-REKGKDPATRTFQAIRIHINQELAELQVVLEAALS 235 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVP 295 L+ GG L+V+SFHSLEDR+VK+F + S R + + + + + V Sbjct: 236 LLEQGGRLVVISFHSLEDRIVKRFMQTHSSAPAVDRRLPIRAVDLPSPPLKLLGR--VFA 293 Query: 296 TQEDVAFNRRSRSAKLRAGMRTV 318 + E+VA N R+RSA +R R Sbjct: 294 SDEEVAANPRARSAVMRVAERIA 316 >gi|315186407|gb|EFU20167.1| S-adenosyl-methyltransferase MraW [Spirochaeta thermophila DSM 6578] Length = 324 Score = 342 bits (877), Expect = 6e-92, Method: Composition-based stats. Identities = 114/318 (35%), Positives = 173/318 (54%), Gaps = 7/318 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQET 77 HVPVL E+V A L+ +++DAT G GG+S + + ++ +D DP +S E Sbjct: 8 HVPVLREEVGAFLSVR-DGLVVDATLGEGGHSEALLESHPGIRLLGVDADPIMLSRAGER 66 Query: 78 MRDYKEQFSLFQATFSQ-LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + + ++ L Q F + L+ + + G++ DLG+SS ++ RGFSF + PLDMR Sbjct: 67 LSRFGDRVRLVQGWFDEVLESFPAEDRPVGILMDLGISSYHLEKSGRGFSFLRREPLDMR 126 Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 +S + ASDVVN + +L + GEE + RIA AIV R+ P T+ L+ ++ Sbjct: 127 LSPYLPMKASDVVNTYSETELVDVFSRFGEEPFSRRIARAIVSERRKMPITTSDHLAEVV 186 Query: 196 QKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 K V + RIHPATR FQALRI VN E+E + + +R+ + L GG + V+SFHSLE Sbjct: 187 MKAVPPKARRGRIHPATRVFQALRIVVNKELERVERAVRAGVRLLAPGGRMAVISFHSLE 246 Query: 255 DRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 DR+VK+ F + I + + +TKK V P +E+V N SRSA+LR Sbjct: 247 DRIVKRLFRFYASACTCPPEEPICRCGGQGIVEVLTKKPVRPGEEEVRTNPASRSARLRV 306 Query: 314 GMRTVERSIEDDSFVHLP 331 + + + + LP Sbjct: 307 LEKVRDAAHLREEGHALP 324 >gi|297161278|gb|ADI10990.1| S-adenosyl-methyltransferase MraW [Streptomyces bingchenggensis BCW-1] Length = 320 Score = 342 bits (877), Expect = 6e-92, Method: Composition-based stats. Identities = 116/311 (37%), Positives = 178/311 (57%), Gaps = 10/311 (3%) Query: 20 HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 HVPV+L++ + +L P PG V++D T G GG+S + + ++ALDRDP A+ Sbjct: 7 HVPVMLQRCLDMLAPALERPGAVVVDCTLGLGGHSEALLRTFPEARLVALDRDPAALELS 66 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y ++ +L A + +L + + G V G++FDLGVSSMQ+D +RGF++ + Sbjct: 67 GARLAPYGDRATLVHAVYDELPEVLARLGIPRVQGILFDLGVSSMQLDEAERGFAYAQDA 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + GISA++V+N +L RIL GEEK A +I A+V+ R PF + Sbjct: 127 PLDMRMDQTTGISAAEVLNTYPPGELVRILRTYGEEKFARKIVDAVVRERAKEPFHNSAR 186 Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L LI+ + +K +PA R+FQALRI VN E+ L + + +A AL GG + V+S Sbjct: 187 LVELIRAALPQAAKRTGGNPAKRTFQALRIEVNGELTVLERAIPAAVAALAVGGRIAVLS 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 +HSLEDRLVK + + + + + +T+ +PT+E++A NRR+ A Sbjct: 247 YHSLEDRLVKHVLGAGAETTAPPGLPVVPERYQPRLKLLTRGAELPTEEEIAENRRAAPA 306 Query: 310 KLRAGMRTVER 320 +LR R E Sbjct: 307 RLRGAERIREE 317 >gi|303232694|ref|ZP_07319379.1| S-adenosyl-methyltransferase MraW [Atopobium vaginae PB189-T1-4] gi|302481180|gb|EFL44255.1| S-adenosyl-methyltransferase MraW [Atopobium vaginae PB189-T1-4] Length = 316 Score = 342 bits (877), Expect = 7e-92, Method: Composition-based stats. Identities = 116/317 (36%), Positives = 176/317 (55%), Gaps = 28/317 (8%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCG----- 74 H+PV+L++ +A LNP PG+++ D T GA G++ + + P +S G Sbjct: 7 HIPVMLQETLAYLNPKPGEIVCDCTLGAAGHTVALAERIC--------PDGLSIGIDQDD 58 Query: 75 --------QETMRDYKEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDR 123 T Q+ Q FSQ+ + + GVD V+FDLGVSS Q+D R Sbjct: 59 AAIAAATQHITRACPTAQYRFLQGNFSQIDELLLKAEVVGVDCVLFDLGVSSPQLDIPSR 118 Query: 124 GFSFQKSGPLDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 GFS+ ++ PLDMRM + ++A++V+N N DLTRIL + G+EK A +IA IVK RQ Sbjct: 119 GFSYHENAPLDMRMDPRNNTLNAAEVINTYNEADLTRILRVFGDEKFAPQIARRIVKERQ 178 Query: 182 SAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 + +TT +L +I+ ++ + + + HPA ++FQA+RI VN+E++ L GL A L Sbjct: 179 TKAIETTFELVDIIKASIPAAARRHAKHPARKTFQAIRIEVNHELDVLQVGLERAIAWLN 238 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQED 299 GG + V+S+HSLEDRLVK FA + + + + ITKK + + E+ Sbjct: 239 TGGRMCVISYHSLEDRLVKHVFAQYARGCVCPVDLPVCVCHKKPIIDVITKKPLYASDEE 298 Query: 300 VAFNRRSRSAKLRAGMR 316 VA N R+RSA +R + Sbjct: 299 VARNPRARSACMRVCKK 315 >gi|206561807|ref|YP_002232572.1| S-adenosyl-methyltransferase MraW [Burkholderia cenocepacia J2315] gi|263447024|sp|B4E6K0|RSMH_BURCJ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|198037849|emb|CAR53793.1| S-adenosyl-methyltransferase MraW [Burkholderia cenocepacia J2315] Length = 313 Score = 342 bits (877), Expect = 7e-92, Method: Composition-based stats. Identities = 115/311 (36%), Positives = 176/311 (56%), Gaps = 19/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H VLL++ + L P V +D TFG GG+SR+ + +IA D+DP A+ Q Sbjct: 7 HRTVLLDEAVESLVTRPDGVYVDGTFGRGGHSRAVLARLAPAARLIAFDKDPRAIETAQ- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +FS+ +F+ ++D + +GV GV+ DLGVSS Q+D RGFSF+ GPL Sbjct: 66 --GIKDARFSIVHDSFASMRDALAARGVEKVSGVLLDLGVSSPQVDDPARGFSFRADGPL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS----APFQTT 188 DMRM + G SA++ + +A+V++LT ++ GEE+ A +IA A+V RR P TT Sbjct: 124 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDTT 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ ++ V + PATR+FQA+RI VN E+ +L L +A L+ GG L+V+ Sbjct: 184 GELAQIVGHVVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVI 242 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDVAFNRRS 306 SFHSLEDR+VK+F + + R + + + I++ P++ +VA N R+ Sbjct: 243 SFHSLEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPPLKIISR--QFPSEAEVAANPRA 300 Query: 307 RSAKLRAGMRT 317 RSA +R R Sbjct: 301 RSAVMRIAERV 311 >gi|167564207|ref|ZP_02357123.1| S-adenosyl-methyltransferase MraW [Burkholderia oklahomensis EO147] gi|167571357|ref|ZP_02364231.1| S-adenosyl-methyltransferase MraW [Burkholderia oklahomensis C6786] Length = 313 Score = 341 bits (876), Expect = 7e-92, Method: Composition-based stats. Identities = 112/312 (35%), Positives = 174/312 (55%), Gaps = 19/312 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H VLL++ + L P V +D TFG GG+SR+ +IA D+DP A+ + Sbjct: 7 HRTVLLDEAVDALVTRPDGVYVDGTFGRGGHSRAVLGRLGAAGRLIAFDKDPRAIETAK- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +F + +F+ L+ + +GV GV+ DLGVSS Q+D +RGFSF+ +GPL Sbjct: 66 --GIEDARFEIVHDSFAALKGALEARGVGRVSGVLLDLGVSSPQVDDPERGFSFRANGPL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS----APFQTT 188 DMRM + G SA++ + +A+V++LT ++ GEE+ A +IA AIV RR P +T Sbjct: 124 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRLGPLDST 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ ++ V + PATR+FQA+RI VN E+ +L L +A +L+ GG L+V+ Sbjct: 184 GELAQIVGHVVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLEAALSSLEQGGRLVVI 242 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDVAFNRRS 306 SFHSLEDR+VK+F + + R + + + + +K P+ +V N R+ Sbjct: 243 SFHSLEDRIVKRFMQTHASAPAVDRRLPIRAVDLPSPPLKLLGRK--FPSDAEVLANPRA 300 Query: 307 RSAKLRAGMRTV 318 RSA +R R Sbjct: 301 RSAVMRIAERVA 312 >gi|90416328|ref|ZP_01224260.1| S-adenosyl-methyltransferase [marine gamma proteobacterium HTCC2207] gi|90332053|gb|EAS47267.1| S-adenosyl-methyltransferase [marine gamma proteobacterium HTCC2207] Length = 309 Score = 341 bits (876), Expect = 7e-92, Method: Composition-based stats. Identities = 106/303 (34%), Positives = 166/303 (54%), Gaps = 6/303 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VLL + I + P +D TFG GG++ V+A+D+DP A+ G++ Sbjct: 9 HTSVLLHEAIDAVVTDPDGFYIDGTFGRGGHTAELLSRLSEHGRVLAIDKDPQAIEAGRK 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 D + ++ +F+ + D+ + V GV+ DLGVSS Q+D +RGFSF + GPLDMR Sbjct: 69 RFAD-DSRLTIVHGSFADMGDWREGREVTGVLLDLGVSSPQLDQAERGFSFMRDGPLDMR 127 Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M S G+SA++ ++ A D+ +++ GEE+ A R+A A+V+ R AP T L+ ++ Sbjct: 128 MDTSSGLSAAEWIDTAAEADIAQVIKEFGEERFAKRMAAAVVRERDLAPITRTVQLAKIL 187 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + + HPAT++FQA+RIF+N E+++L L LK G L+V+SFHSLED Sbjct: 188 ADAHPAWERGK-HPATKAFQAIRIFINRELDDLVALLEQVIDLLKIDGRLVVISFHSLED 246 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 R VK+F + + +++ + V K + P +V N RSRSA +R Sbjct: 247 RKVKRFIRDQERGIKLPKNLPVRDVERGVRLKKIGKAIKPEAVEVGGNVRSRSAVMRVAE 306 Query: 316 RTV 318 R Sbjct: 307 RVA 309 >gi|307731080|ref|YP_003908304.1| S-adenosyl-methyltransferase MraW [Burkholderia sp. CCGE1003] gi|307585615|gb|ADN59013.1| S-adenosyl-methyltransferase MraW [Burkholderia sp. CCGE1003] Length = 313 Score = 341 bits (876), Expect = 7e-92, Method: Composition-based stats. Identities = 113/312 (36%), Positives = 174/312 (55%), Gaps = 19/312 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H VLLE+ + L V +D TFG GG+SR + +IA D+DP A++ Q+ Sbjct: 7 HRTVLLEEAVEALVTRADGVYVDGTFGRGGHSRRVLEKLGEAGRLIAFDKDPLAIATAQQ 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +F++ +F+ L+ + ++G V GV+ DLGVSS Q+D +RGFSF+ GPL Sbjct: 67 IA---DPRFAIVHESFASLRTAIAERGIERVSGVLLDLGVSSPQVDDPERGFSFRADGPL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS----APFQTT 188 DMRM + G SA+D + +A V++LT ++ GEE+ A +IA A+V RR P +T Sbjct: 124 DMRMDPTRGESAADWLARATVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLVST 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ ++ V + PATR+FQA+RI +N E+ EL L +A L+ GG L+V+ Sbjct: 184 GELAQIVANVVKT-REKGKDPATRTFQAIRIHINQELAELQVVLEAALSLLEQGGRLVVI 242 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDVAFNRRS 306 SFHSLEDR+VK+F + + R + + + I + + + +VA N R+ Sbjct: 243 SFHSLEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPPLKIIGR--IFASDAEVAANPRA 300 Query: 307 RSAKLRAGMRTV 318 RSA +R R Sbjct: 301 RSAVMRVAERIA 312 >gi|281356442|ref|ZP_06242934.1| S-adenosyl-methyltransferase MraW [Victivallis vadensis ATCC BAA-548] gi|281317134|gb|EFB01156.1| S-adenosyl-methyltransferase MraW [Victivallis vadensis ATCC BAA-548] Length = 314 Score = 341 bits (876), Expect = 7e-92, Method: Composition-based stats. Identities = 116/314 (36%), Positives = 182/314 (57%), Gaps = 11/314 (3%) Query: 15 HTIGDHVPVLLEKVIALL---NPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69 +H+PVL +V+ L + P ++ +D T G GG+S + ++ +DRD Sbjct: 2 EAAFEHIPVLRREVLKYLTFPSDRPARL-IDGTVGGGGHSALLLRRYPQLELLGIDRDEN 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFS 126 A++ ET+ + +L + +S L + G VDG++ D+GVSS Q+D RGFS Sbjct: 61 ALAKAAETLAFAGNRVTLVRGDYSSLAGRAAEHGWEEVDGILLDIGVSSPQLDHAGRGFS 120 Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 ++ GPLDMRM S ++AS +N+A+ ++L R+L GE ++ R+A AIVK+R++ PF Sbjct: 121 WRAEGPLDMRMDQRSELTASRFLNRASEQELERVLREYGEVDKSRRVAAAIVKKRETHPF 180 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT DL L + + SK ++ T FQALRI VN+E+ EL + L +AEK LK GG + Sbjct: 181 ATTADLVGLCDEVLGKSKPGKLPAPTLVFQALRIAVNDELGELERALPAAEKLLKKGGRI 240 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 +V+SFHSLEDR+VK +F + + + + + +T KVV ++++A NR Sbjct: 241 VVISFHSLEDRIVKNYFRDAAASCICPPGLPVCVCGKQSTLKVLTNKVVTAREDELAENR 300 Query: 305 RSRSAKLRAGMRTV 318 RS A+LRA + V Sbjct: 301 RSAPARLRAAEKLV 314 >gi|58584368|ref|YP_197941.1| S-adenosyl-methyltransferase MraW [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|68565413|sp|Q5GTH5|RSMH_WOLTR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|58418684|gb|AAW70699.1| Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 333 Score = 341 bits (876), Expect = 7e-92, Method: Composition-based stats. Identities = 128/339 (37%), Positives = 185/339 (54%), Gaps = 52/339 (15%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQETM 78 H+PVLL++++ L+P G + +DATFGAGGYS++ + V A+DRD + ++ Sbjct: 3 HIPVLLKEMLLQLSPQNGGIYVDATFGAGGYSKAILESADCKVYAIDRDKTVIKFYEDLN 62 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKG----------------------------------- 103 Y + LF FS ++ + Sbjct: 63 IKYPSRVKLFIEKFSNIRSILDSNSLEYLVEPSAVSKLSSIISSGIQKKNIWISASSTGV 122 Query: 104 -----VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGIS-ASDVVNQANVKDLT 157 VDGVVFD+GVSSMQ+D GDRGFSF GPLDMRM S + AS VN +++ Sbjct: 123 TPSNTVDGVVFDIGVSSMQLDDGDRGFSFLHDGPLDMRMDNSSHTNASTFVNALREEEIA 182 Query: 158 RILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQAL 217 + G E+ + RIA AIV R+ +TT +L+++++ V+ K ++I PATR+FQA+ Sbjct: 183 NTIYNYGGERHSRRIARAIVNARKKKTIKTTFELANIVRSVVFRGK-SKIDPATRTFQAI 241 Query: 218 RIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP 277 RI+VN+E+ EL +G+++A + L G LIVV+FHSLEDR+VK FF S P Sbjct: 242 RIWVNDELGELEKGIKAASEILNKNGKLIVVTFHSLEDRIVKTFFKSLCE---------P 292 Query: 278 SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 + VF + KK++ + E+V N RSRSAKLRA R Sbjct: 293 RSIDCKVFSLLNKKMIKASAEEVNANPRSRSAKLRAIQR 331 >gi|255994327|ref|ZP_05427462.1| S-adenosyl-methyltransferase MraW [Eubacterium saphenum ATCC 49989] gi|255993040|gb|EEU03129.1| S-adenosyl-methyltransferase MraW [Eubacterium saphenum ATCC 49989] Length = 311 Score = 341 bits (876), Expect = 8e-92, Method: Composition-based stats. Identities = 107/309 (34%), Positives = 168/309 (54%), Gaps = 10/309 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H PV+L + I LN +D T G GG+ K +I +D+D A+ + Sbjct: 4 KHSPVMLHECIEALNIKEDGTYIDCTLGGGGHFTEIAKRLSEDGRLIGIDKDADAIDAYR 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + + + ++ F +++ G+DG ++ DLGVSS Q+D RGFS++ P Sbjct: 64 RRNVNTRCKVDIVKSDFKDIREVAAKTGIDGADGILMDLGVSSYQLDKASRGFSYKNDAP 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM +A VVN+ + ++LTR++ +EK A+RIA AIV+ R+ A ++T L Sbjct: 124 LDMRMDREQKFTAKTVVNEYSKEELTRVIREYSDEKWAARIAAAIVREREEAEIESTARL 183 Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 S +I++ + + + HPA R+FQA+RI VN E+ L + L+ A+ L G L V+SF Sbjct: 184 SEIIKEAIPAATRRTGPHPAKRTFQAIRIEVNGELGMLEKTLKDAKAILNKNGRLAVISF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT-KKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VKK+ + + IP A IT K++ P+ +++ N R+RSA Sbjct: 244 HSLEDRIVKKWIQDELHPCICPKD-IPVCACNRRSDIITVGKIICPSVDELDRNPRARSA 302 Query: 310 KLRAGMRTV 318 KLR R Sbjct: 303 KLRVIERVA 311 >gi|257092216|ref|YP_003165857.1| S-adenosyl-methyltransferase MraW [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044740|gb|ACV33928.1| S-adenosyl-methyltransferase MraW [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 316 Score = 341 bits (876), Expect = 8e-92, Method: Composition-based stats. Identities = 112/316 (35%), Positives = 175/316 (55%), Gaps = 17/316 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 H VLL++ + L P +D TFG GG+SR+ + G ++A DRDP AV+ Sbjct: 6 PHQTVLLQEAVEALAIKPAGTYVDGTFGRGGHSRAILQRLGTGGRLLAFDRDPQAVAMAS 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVP------DKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 + + + F L D + ++G+DGV+ D+GVSS Q+D RGFSF+ Sbjct: 66 ---GETDARLLVMHERFGDLADALRRAGCAVEQGIDGVLLDIGVSSPQLDEHARGFSFRG 122 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM + G +A+ + +A+ +++T ++ GEE+ A +IA IV R TT Sbjct: 123 DAPLDMRMDTTQGETAAQWLGRASEQEITEVIRNYGEERFAFQIAKKIVAARGERSVATT 182 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L++L+++TV + + ATR+FQALRI +N E+E+LA L A LKAGG L+V+ Sbjct: 183 GELAALVRQTVRTREPGQ-DAATRTFQALRIHINQELEQLALVLPQAMTVLKAGGRLVVI 241 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 SFHSLEDR+VK+F + R + ++ P + I K V + ++A N R+ Sbjct: 242 SFHSLEDRIVKRFLRDEAAPDRLPRKLPLRAADLPPPRLRLI-GKPVRASAAEIAANPRA 300 Query: 307 RSAKLRAGMRTVERSI 322 RSA +R + ++ Sbjct: 301 RSAIMRVAEKLARKAA 316 >gi|170700174|ref|ZP_02891192.1| S-adenosyl-methyltransferase MraW [Burkholderia ambifaria IOP40-10] gi|172059541|ref|YP_001807193.1| S-adenosyl-methyltransferase MraW [Burkholderia ambifaria MC40-6] gi|263446887|sp|B1YSR6|RSMH_BURA4 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|170134906|gb|EDT03216.1| S-adenosyl-methyltransferase MraW [Burkholderia ambifaria IOP40-10] gi|171992058|gb|ACB62977.1| S-adenosyl-methyltransferase MraW [Burkholderia ambifaria MC40-6] Length = 313 Score = 341 bits (876), Expect = 8e-92, Method: Composition-based stats. Identities = 113/311 (36%), Positives = 176/311 (56%), Gaps = 19/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H VLL++ + L P + +D TFG GG+SR+ +IA D+DP A+ + Sbjct: 7 HRTVLLDEAVESLVTRPDGIYVDGTFGRGGHSRAVLARLAEAGRLIAFDKDPRAIETA-Q 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + D +FS+ +F+ ++D + +G V GV+ DLGVSS Q+D RGFSF+ GPL Sbjct: 66 RIEDA--RFSIVHDSFASMRDALAARGIEKVSGVLLDLGVSSPQVDDPARGFSFRADGPL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS----APFQTT 188 DMRM + G SA++ + +A+V++LT ++ GEE+ A +IA A+V RR P TT Sbjct: 124 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDTT 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ ++ V + PATR+FQA+RI VN E+ +L L +A L+ GG L+V+ Sbjct: 184 GELAQIVGHVVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVI 242 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDVAFNRRS 306 SFHSLEDR+VK+F + + R + + + I++ P++ +V N R+ Sbjct: 243 SFHSLEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPPLKIISR--QFPSEAEVVANPRA 300 Query: 307 RSAKLRAGMRT 317 RSA +R R Sbjct: 301 RSAVMRIAERV 311 >gi|256820422|ref|YP_003141701.1| S-adenosyl-methyltransferase MraW [Capnocytophaga ochracea DSM 7271] gi|256582005|gb|ACU93140.1| S-adenosyl-methyltransferase MraW [Capnocytophaga ochracea DSM 7271] Length = 304 Score = 341 bits (875), Expect = 9e-92, Method: Composition-based stats. Identities = 107/311 (34%), Positives = 159/311 (51%), Gaps = 17/311 (5%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPF 69 +++ H PVLL + I LN +D TFG GG+SR K + A D+D Sbjct: 1 MNNNTPYHTPVLLTQSIEGLNIKDNGTYVDVTFGGGGHSREILKHLGKNGRLYAFDQDAD 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFS 126 A++ + E+F+L Q F L+ Y+ GV DGV+ D GVSS Q D +RGFS Sbjct: 61 ALNNTID-----DERFTLIQQNFKYLRQYLRFYGVTQVDGVLGDFGVSSHQFDVAERGFS 115 Query: 127 FQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 + G LDMRM+ +SA +VVN+ +LT I GE K A IA AI+ R+ P Sbjct: 116 TRFEGTLDMRMNQQAPLSAQEVVNEYGEIELTHIFFQYGELKNAKAIARAIISYREQKPI 175 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 + +L ++ + K N++ + +QA+RI VN EIE L L +K G + Sbjct: 176 RLGSELQEAVKALLPKFKENKV--LAQIYQAIRIEVNAEIEALESFLLQLPAVVKPQGRI 233 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 ++S+HSLEDR VK+F + + + + P F+ + ++ P ++A N R Sbjct: 234 SLISYHSLEDRCVKRFIRDGQLEGAPEKDWYGNVSVP--FKKV-GGLITPDDTEIAQNSR 290 Query: 306 SRSAKLRAGMR 316 +RSAKLR R Sbjct: 291 ARSAKLRIAER 301 >gi|126665254|ref|ZP_01736237.1| S-adenosyl-methyltransferase MraW [Marinobacter sp. ELB17] gi|126630624|gb|EBA01239.1| S-adenosyl-methyltransferase MraW [Marinobacter sp. ELB17] Length = 325 Score = 341 bits (875), Expect = 9e-92, Method: Composition-based stats. Identities = 117/311 (37%), Positives = 175/311 (56%), Gaps = 9/311 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H VLL+ + LL G +DATFG GG+SR + + ++ +D+DP A+ Sbjct: 15 HRSVLLDSAVDLLLTDSGGRYVDATFGRGGHSRMILERLAENGALLGIDKDPQAIDEA-R 73 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 T+ +F+ F +F+ L + V+GV+ DLGVSS Q+D RGFSF + GPL Sbjct: 74 TLAAADSRFNAFHGSFADLGQALEQAHWPQVEGVLMDLGVSSPQLDDASRGFSFMRQGPL 133 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ SA++ + A+ K + ++ GEE+ + RIA IV+RR AP TT +L+ Sbjct: 134 DMRMNPQQAPSAAEWLASADEKVIADVIFKYGEERFSRRIARLIVERRAEAPITTTLELA 193 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 L K V K HPATR+FQA+RIF+N E+E+L GL++A + L GG L+V+SFHS Sbjct: 194 ELAAKAVP-KKEKHKHPATRTFQAIRIFINRELEDLELGLKAAAEKLAPGGRLVVISFHS 252 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDRLVK+F + + + + A + + K ++V+ N R+RSA +R Sbjct: 253 LEDRLVKRFMRDLARGPQMPKGIPVTAAEESSAYRLIGKPSKAASDEVSDNVRARSAVMR 312 Query: 313 AGMRTVERSIE 323 R + + E Sbjct: 313 VLERRADIAQE 323 >gi|330446835|ref|ZP_08310486.1| S-adenosyl-methyltransferase MraW [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491026|dbj|GAA04983.1| S-adenosyl-methyltransferase MraW [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 315 Score = 341 bits (875), Expect = 9e-92, Method: Composition-based stats. Identities = 116/313 (37%), Positives = 169/313 (53%), Gaps = 19/313 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 +HV VLL + + L P + +D TFG GG+SR + ++DRDP A++ Q Sbjct: 6 EHVSVLLHESVDGLAIKPDGIYIDGTFGRGGHSRLILSQLGENGRLYSIDRDPQAIAEAQ 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +F + FS ++ Y+ + VDGV+ DLGVSS Q+D +RGFSF + G Sbjct: 66 KI---NDPRFEIIHGPFSGMEKYMEARDLIGRVDGVLLDLGVSSPQLDDAERGFSFMRDG 122 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ---SAPFQT 187 PLDMRM SG SA++ + +A D+ +L GEE+ A RIA IV+ R+ P Sbjct: 123 PLDMRMDPTSGQSAAEWLAEAEADDIAWVLKEFGEERFAKRIARGIVEHRENPEKEPLTR 182 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T+ L+SLI + F K+ HPATRSFQA+RI++N+E++E+ L A L G L V Sbjct: 183 TRQLASLIAEVSPF-KDKHKHPATRSFQAIRIYINSELDEIQTALNGAVNILAPEGRLSV 241 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVVVPTQEDVAFN 303 +SFHSLEDR+VK+F S + + K + P+Q ++ N Sbjct: 242 ISFHSLEDRMVKRFIRKESKGPEVPAGLPLTEEQIKALGSAALKTVGKAIKPSQTELGHN 301 Query: 304 RRSRSAKLRAGMR 316 R+RS+ LR R Sbjct: 302 TRARSSVLRLAER 314 >gi|326388910|ref|ZP_08210492.1| methyltransferase [Novosphingobium nitrogenifigens DSM 19370] gi|326206510|gb|EGD57345.1| methyltransferase [Novosphingobium nitrogenifigens DSM 19370] Length = 322 Score = 341 bits (875), Expect = 9e-92, Method: Composition-based stats. Identities = 135/321 (42%), Positives = 192/321 (59%), Gaps = 13/321 (4%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCG 74 H+PVL+++V+ L PG ++D TFGAGGYSR+ G+ V A DRDP A++ G Sbjct: 5 DATSPHIPVLIDEVLVALGAGPGMTMVDGTFGAGGYSRALVAAGARVHAFDRDPDAIAAG 64 Query: 75 QETM--RDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQK 129 + Q L FS+L + + + GV DGVVFD+GVSSMQ+D +RGF+F Sbjct: 65 RLLAECAGEDPQLVLHHRRFSELAEGLAEAGVEQVDGVVFDIGVSSMQLDQANRGFAFSS 124 Query: 130 SGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 GPLDMRM+ G SA+D +N A+ + +L I GEE+Q+ RIA AIV R P TT+ Sbjct: 125 DGPLDMRMAQEGPSAADFLNTADEAAIADVLYIYGEERQSRRIARAIVAAR---PLTTTR 181 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 + +++K + + PATRSFQA+RI VN E++EL GL +AE+ L GG L VV+ Sbjct: 182 QFAEVVRKALGYRPGAPKDPATRSFQAVRIHVNGELDELTAGLAAAERVLAPGGRLAVVT 241 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKK---VVVPTQEDVAFNRRS 306 FHSLEDR+VK+F +G V A +P A A + + +K + P +E++A N R+ Sbjct: 242 FHSLEDRIVKQFLREAAGLVPAGSRHLPVLASTA--RPVFEKPSSPIRPGEEELARNPRA 299 Query: 307 RSAKLRAGMRTVERSIEDDSF 327 RSA LR +R+ + + S Sbjct: 300 RSATLRWAVRSDAPARQSGSH 320 >gi|193213705|ref|YP_001999658.1| S-adenosyl-methyltransferase MraW [Chlorobaculum parvum NCIB 8327] gi|263445798|sp|B3QLX2|RSMH_CHLP8 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|193087182|gb|ACF12458.1| S-adenosyl-methyltransferase MraW [Chlorobaculum parvum NCIB 8327] Length = 318 Score = 341 bits (875), Expect = 9e-92, Method: Composition-based stats. Identities = 107/313 (34%), Positives = 169/313 (53%), Gaps = 18/313 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG------SNVIALDRDPFAVSC 73 H PVL + +LL P + +D T G GG+S + S ++ +D+D +A+ Sbjct: 7 HEPVLADATTSLLVTRP-GIYIDGTLGGGGHSLELLRRLDALDGESLLVGIDQDSYALEA 65 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG--------VDGVVFDLGVSSMQIDCGDRGF 125 + ++D+ ++ L + FS +++ + V G++ DLGVSS QID RGF Sbjct: 66 AGQKLQDFGDKAILLRGNFSMVRELLAPVKRGPGEGLEVMGLLLDLGVSSFQIDTPVRGF 125 Query: 126 SFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 S+ + GPLDMRM G ++A+D+VN + L R+ GEE RIA A+V R AP Sbjct: 126 SYLRDGPLDMRMDPDGPLTAADIVNDYEEQALARLFFRYGEEAHGGRIARAVVSARSVAP 185 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 TT L+ ++++ K++ I +R +QALRI VN+E+ L Q L L GG Sbjct: 186 ITTTGGLAEVVRRACP-RKDSPIKTLSRIYQALRIEVNDELGVLQQALEDGFAVLSPGGR 244 Query: 245 LIVVSFHSLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 V+S+HSLEDR+VK+FF++R + + PA + +T+K V + +V+ N Sbjct: 245 FAVISYHSLEDRIVKRFFSARCTADWGPKGLPLREPLKPAEAELVTRKSVQAGEAEVSRN 304 Query: 304 RRSRSAKLRAGMR 316 R+RSA+LR + Sbjct: 305 PRARSARLRVIQK 317 >gi|220909120|ref|YP_002484431.1| S-adenosyl-methyltransferase MraW [Cyanothece sp. PCC 7425] gi|263446188|sp|B8HTI9|RSMH_CYAP4 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|219865731|gb|ACL46070.1| S-adenosyl-methyltransferase MraW [Cyanothece sp. PCC 7425] Length = 294 Score = 341 bits (875), Expect = 1e-91, Method: Composition-based stats. Identities = 125/311 (40%), Positives = 171/311 (54%), Gaps = 26/311 (8%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDR 66 M + H+PVL + VI LN PG LDAT G GG+SR + V ALDR Sbjct: 1 MIPSELEPEFLHIPVLSQAVIQGLNLRPGGHYLDATVGGGGHSRLILEAAPESQVTALDR 60 Query: 67 DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126 D A+ + ++ Y E+ +Q+ F+ + DG++ DLGVSS Q+D RGFS Sbjct: 61 DQQALQAARSALQPYGERVQFYQSNFADYES--GSLRFDGILADLGVSSAQLDQPQRGFS 118 Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 F+ PLDMRM ++A+++VN A+ ++L I GEE+ A RIA IV+ R P Sbjct: 119 FRADAPLDMRMDQRQSLTAAELVNTASAEELADIFYYYGEERFARRIARRIVQHR---PL 175 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT L+SL+ + + S++ IHPATR FQALRI VN E+E L Q L + L GG L Sbjct: 176 YTTAQLASLVSRALP-SRSQSIHPATRVFQALRIAVNRELESLEQFLERSPHWLVTGGRL 234 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V+SFHSLEDR VK S + Q +TKK ++P+ E+++ N R Sbjct: 235 AVISFHSLEDRRVKHGLRDHS-----------------LLQVLTKKPILPSSEEISANPR 277 Query: 306 SRSAKLRAGMR 316 +RSAKLR R Sbjct: 278 ARSAKLRLAQR 288 >gi|221213285|ref|ZP_03586260.1| S-adenosyl-methyltransferase MraW [Burkholderia multivorans CGD1] gi|221166737|gb|EED99208.1| S-adenosyl-methyltransferase MraW [Burkholderia multivorans CGD1] Length = 313 Score = 341 bits (875), Expect = 1e-91, Method: Composition-based stats. Identities = 112/311 (36%), Positives = 174/311 (55%), Gaps = 19/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H VLL++ + L P + +D TFG GG+SR+ +IA D+DP A+ Q Sbjct: 7 HRTVLLDEAVESLVTRPDGIYVDGTFGRGGHSRAVLARLGPAGRLIAFDKDPRAIETAQS 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +FS+ +F+ ++D + +G V GV+ DLGVSS Q+D RGFSF+ GPL Sbjct: 67 MA---DARFSIVHDSFASMRDALAARGIEKVSGVLLDLGVSSPQVDDPARGFSFRADGPL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS----APFQTT 188 DMRM + G SA++ + +A++++LT ++ GEE+ A +IA A+V RR P +T Sbjct: 124 DMRMDPTRGESAAEWLARASLQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDST 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ ++ V + PATR+FQA+RI VN E+ +L L +A L+ GG L+V+ Sbjct: 184 GELAQIVGHVVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVI 242 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDVAFNRRS 306 SFHSLEDR+VK+F + + R + + + I + P++ +VA N R+ Sbjct: 243 SFHSLEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPPLKIIGR--QFPSEAEVAANPRA 300 Query: 307 RSAKLRAGMRT 317 RSA +R R Sbjct: 301 RSAVMRIAERV 311 >gi|282902029|ref|ZP_06309927.1| methyltransferase [Cylindrospermopsis raciborskii CS-505] gi|281193116|gb|EFA68115.1| methyltransferase [Cylindrospermopsis raciborskii CS-505] Length = 299 Score = 341 bits (875), Expect = 1e-91, Method: Composition-based stats. Identities = 109/312 (34%), Positives = 165/312 (52%), Gaps = 26/312 (8%) Query: 11 SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDP 68 + ++ H+PVL E++I L G LD T G GG+SR + N V+A+D+D Sbjct: 9 TPLNQFTFSHIPVLGEELIRGLTIQAGGNYLDLTVGGGGHSRLILQAADNTKVMAVDQDL 68 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 A+ + + ++ ++ F+ P DG++ DLGVSS +D RGFSF+ Sbjct: 69 DALKAAKINLSEFGDRVDFLHTNFANFP--FPPNTYDGILADLGVSSYHLDNPVRGFSFR 126 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + LDMRM+ ++A+D+VN N ++LT I GEE+ + +IA I++ R PF T Sbjct: 127 NTANLDMRMNQQQSLTAADIVNGWNEQELTHIFFHYGEERLSRKIARRIIENR---PFST 183 Query: 188 TQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T +L+ I V + RIHPATR FQALR+ VN+E++ L L A +L GG + Sbjct: 184 TTELAESISSCVPPKYRYGRIHPATRVFQALRLAVNDELQVLETLLHKAPPSLVPGGKIA 243 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 ++SFHSLEDR+VK + + +TKK + T+ ++ N RS Sbjct: 244 LISFHSLEDRIVKHGLRNSD-----------------LLTVMTKKPITATESEIQHNPRS 286 Query: 307 RSAKLRAGMRTV 318 RSAKLR + Sbjct: 287 RSAKLRIAQKVA 298 >gi|50955157|ref|YP_062445.1| S-adenosyl-methyltransferase [Leifsonia xyli subsp. xyli str. CTCB07] gi|54036175|sp|Q6AE56|RSMH_LEIXX RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|50951639|gb|AAT89340.1| S-adenosyl-methyltransferase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 325 Score = 341 bits (874), Expect = 1e-91, Method: Composition-based stats. Identities = 125/325 (38%), Positives = 176/325 (54%), Gaps = 13/325 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSN--VIA 63 MS IH I H+PVLLE+ I LL PA PG VI+DAT G GG+S ++ Sbjct: 1 MSDDIHGDI--HLPVLLERCIELLAPALQEPGAVIVDATLGMGGHSAGILARFPQATLVG 58 Query: 64 LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDC 120 LDRDP A++ E + + ++ L + +++ + G V GV+FDLGVSS+Q+D Sbjct: 59 LDRDPDALAIAGERLARFGDRVHLVHTVYDGIREALDGLGIAEVQGVLFDLGVSSLQLDR 118 Query: 121 GDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS+ K PLDMRM S ++A V+ + DL RI GEEK A+R A IV Sbjct: 119 VERGFSYSKDAPLDMRMDGTSDLTAERVLAEYPEADLRRIFRDYGEEKLAARYAQRIVAA 178 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 RQ P + +L L+Q+ + + HPA R FQALRI VN E+ L + L +A AL Sbjct: 179 RQQGPITRSGELVHLLQRATPAAIARQGHPAKRVFQALRIEVNQELAVLERALPAAVDAL 238 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 GG L+V S+ SLEDR+VK+ +RS + H + + + + ++ Sbjct: 239 AVGGRLVVESYQSLEDRIVKRELQTRSRSSAPAGLPVELPEHRPELRLLIRGAELADDDE 298 Query: 300 VAFNRRSRSAKLRAGMRTVERSIED 324 A N R+ +LRA RT R+ ED Sbjct: 299 KAANPRAAPVRLRAAERT--RASED 321 >gi|149198205|ref|ZP_01875252.1| putative S-adenosylmethionine-dependent methyltransferase [Lentisphaera araneosa HTCC2155] gi|149138807|gb|EDM27213.1| putative S-adenosylmethionine-dependent methyltransferase [Lentisphaera araneosa HTCC2155] Length = 311 Score = 341 bits (874), Expect = 1e-91, Method: Composition-based stats. Identities = 109/307 (35%), Positives = 168/307 (54%), Gaps = 8/307 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76 H+PVL E+VI L P G +D T G GG+S G + ++ LD D A+ E Sbjct: 5 HHIPVLAEQVIDGLRPQNGGKFIDCTLGGGGHSSMILSSGPDVKLLGLDCDDNALRAASE 64 Query: 77 TMRDYKEQFSLFQATFSQL---QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + ++F + F L +D VDG++ D+GVSS +D RGF+++++GPL Sbjct: 65 RLSSFGDRFKSKRLNFRDLAKLKDDAEWNQVDGILMDIGVSSHHLDEASRGFTYRENGPL 124 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM ++AS ++N+ +++ LT+I GE K+A R+A A+V R+ F T+ L+ Sbjct: 125 DMRMDRRLKVTASMILNKESLEGLTKIFRDYGEMKEAYRLAKAVVADREKELFTHTEQLA 184 Query: 193 SLIQKTVYFSKNNRIHPA-TRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 L + + +PA T +FQALRI VN+E+ L G+++A LK GG L V+SFH Sbjct: 185 GLADRVCVNRNRRKRNPAPTLAFQALRIAVNDELGALESGMKAAFDLLKPGGRLAVISFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK+FF ++ I A + IT+K + ++A N R+ AK Sbjct: 245 SLEDRMVKEFFKDKATSCTCPPDLPICVCGSKAQMKIITRKPLTAESGELAENTRAACAK 304 Query: 311 LRAGMRT 317 LR + Sbjct: 305 LRVAEKI 311 >gi|325676969|ref|ZP_08156641.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Rhodococcus equi ATCC 33707] gi|325552269|gb|EGD21959.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Rhodococcus equi ATCC 33707] Length = 334 Score = 341 bits (874), Expect = 1e-91, Method: Composition-based stats. Identities = 112/320 (35%), Positives = 175/320 (54%), Gaps = 18/320 (5%) Query: 20 HVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69 HVPVLL + LL PA G V++DAT G GG+S F + ++I LDRDP Sbjct: 15 HVPVLLNRADDLLGPAITADNPRGDGAVMIDATLGLGGHSEYFLRTYPGLHLIGLDRDPE 74 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD------GVVFDLGVSSMQIDCGDR 123 A+ + + Y ++ + + + + + G+D ++FDLGVSSMQ+D DR Sbjct: 75 ALRIASDRLAPYADRTTFVHTRYDGIVEALGQAGLDPVGSVHAILFDLGVSSMQLDEADR 134 Query: 124 GFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GF++ PLDMRM+ + GI+A++V+N + +L RIL GEE+ A RIA IV+RRQ Sbjct: 135 GFAYSIDAPLDMRMNPTTGITAAEVLNTYSHGELARILSTYGEERFAGRIASEIVRRRQK 194 Query: 183 APFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 PF T+ L L+ T+ + + HPA R+FQALR+ VN E++ L + + AL Sbjct: 195 QPFTTSAALVELLYDTIPAATRRTGGHPAKRTFQALRVEVNGELDSLRDAIPAGLDALAV 254 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 GG ++ +S+ SLEDR+VK+ A R+ + F+ +T+ ++ ++ Sbjct: 255 GGRVVFMSYQSLEDRVVKQELAPRAKSKTPEGLPVELPGMGPEFKILTRGAERASEAEIE 314 Query: 302 FNRRSRSAKLRAGMRTVERS 321 N R+ +LRA R ++ Sbjct: 315 DNPRAAPVRLRAAERIARKA 334 >gi|193214541|ref|YP_001995740.1| S-adenosyl-methyltransferase MraW [Chloroherpeton thalassium ATCC 35110] gi|263446020|sp|B3QWS9|RSMH_CHLT3 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|193088018|gb|ACF13293.1| S-adenosyl-methyltransferase MraW [Chloroherpeton thalassium ATCC 35110] Length = 321 Score = 341 bits (874), Expect = 1e-91, Method: Composition-based stats. Identities = 108/317 (34%), Positives = 173/317 (54%), Gaps = 20/317 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--------VIALDRDPFAV 71 H PVLLE+ + L + + +DAT G G+S+ +I +DRD A+ Sbjct: 6 HKPVLLEESVHWL-VSESGMYIDATLGGAGHSKEILHRLETQHLLSNSLLIGIDRDANAI 64 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG--------VDGVVFDLGVSSMQIDCGDR 123 + Y + + F+ L+ + G + G++ DLG+SS QID R Sbjct: 65 RAATTRLATYAAHAHILRGRFADLKLLLETNGLLDSGNHPIRGILLDLGISSHQIDAPAR 124 Query: 124 GFSFQKSGPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GFSFQ+SGPLDMRM + ++A++VVN + + L++I GEE++A IA IV+ R+ Sbjct: 125 GFSFQQSGPLDMRMSDTAQLTAAEVVNHYDERSLSKIFFDYGEEREAKWIARKIVEARKQ 184 Query: 183 APFQTTQDLSSLIQKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 P +TT L+ LI++ + + R FQA+RI VN E++EL L++A + L Sbjct: 185 TPLETTAALALLIRQNLNRKSPVEQTKTLARIFQAIRIEVNGELDELKAVLQAAHEVLSE 244 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDV 300 G L+V+S+HSLEDR+VK+FF + + + ++ A + +TKK V+ ++E++ Sbjct: 245 KGRLVVISYHSLEDRIVKQFFNECASEDWGPKGVVLDVPIKTATMKILTKKPVLASEEEI 304 Query: 301 AFNRRSRSAKLRAGMRT 317 N R+RSAKLR + Sbjct: 305 QENSRARSAKLRVAEKI 321 >gi|171316199|ref|ZP_02905422.1| S-adenosyl-methyltransferase MraW [Burkholderia ambifaria MEX-5] gi|171098613|gb|EDT43410.1| S-adenosyl-methyltransferase MraW [Burkholderia ambifaria MEX-5] Length = 313 Score = 341 bits (874), Expect = 1e-91, Method: Composition-based stats. Identities = 113/311 (36%), Positives = 176/311 (56%), Gaps = 19/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H VLL++ + L P + +D TFG GG+SR+ +IA D+DP A+ + Sbjct: 7 HRTVLLDEAVESLVTRPDGIYVDGTFGRGGHSRAVLARLAEAGRLIAFDKDPRAIETA-Q 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + D +FS+ +F+ ++D + +G V GV+ DLGVSS Q+D RGFSF+ GPL Sbjct: 66 RIEDA--RFSIVHDSFASMRDALAARGIEKVSGVLLDLGVSSPQVDDPARGFSFRADGPL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS----APFQTT 188 DMRM + G SA++ + +A+V++LT ++ GEE+ A +IA A+V RR P TT Sbjct: 124 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDTT 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ ++ V + PATR+FQA+RI VN E+ +L L +A L+ GG L+V+ Sbjct: 184 GELAQIVGHVVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVI 242 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDVAFNRRS 306 SFHSLEDR+VK+F + + R + + + I++ P++ +V N R+ Sbjct: 243 SFHSLEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPSLKIISR--QFPSEAEVVANPRA 300 Query: 307 RSAKLRAGMRT 317 RSA +R R Sbjct: 301 RSAVMRIAERV 311 >gi|325980947|ref|YP_004293349.1| S-adenosyl-methyltransferase MraW [Nitrosomonas sp. AL212] gi|325530466|gb|ADZ25187.1| S-adenosyl-methyltransferase MraW [Nitrosomonas sp. AL212] Length = 308 Score = 341 bits (874), Expect = 1e-91, Method: Composition-based stats. Identities = 116/311 (37%), Positives = 173/311 (55%), Gaps = 15/311 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H PVLL + L P + +DATFG GG+SR +IALDRDP AV G+ Sbjct: 1 MHTPVLLHAAVDALALKPEGIYVDATFGRGGHSRLILSGLGECGRLIALDRDPAAVLSGE 60 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 ++F + +FS++++ + +DGV+ DLGVSS Q++ RGFSF+ +GP Sbjct: 61 ---AITDKRFCIRHGSFSRVREILQAMEITRIDGVLLDLGVSSPQLEDTARGFSFRSAGP 117 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM SG +AS+ ++ + +L ++ GEE+ A +IA AI+ R P TT L Sbjct: 118 LDMRMDTSGGQTASEWLSTVSESELEWVIKEYGEERFARQIARAILAARTQQPIATTLQL 177 Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 + ++ V ++++ HPATR+FQA+RI++N E+EELA L L+ GG L+V+SF Sbjct: 178 AGIVAAVVRARQRDSKRHPATRTFQAIRIYLNRELEELALVLPQCVDLLRPGGRLVVISF 237 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT----KKVVVPTQEDVAFNRRS 306 HSLEDR+VK+F + + R + F T + + + +V N RS Sbjct: 238 HSLEDRMVKQFIRAAASTDNLPRGVPVREEELQRFSKQTLRPVGRAIRSNELEVTENVRS 297 Query: 307 RSAKLRAGMRT 317 RSA +R G R Sbjct: 298 RSAVMRVGERI 308 >gi|124265647|ref|YP_001019651.1| S-adenosyl-methyltransferase MraW [Methylibium petroleiphilum PM1] gi|167011833|sp|A2SCX7|RSMH_METPP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|124258422|gb|ABM93416.1| S-adenosyl-methyltransferase MraW [Methylibium petroleiphilum PM1] Length = 318 Score = 340 bits (873), Expect = 2e-91, Method: Composition-based stats. Identities = 125/307 (40%), Positives = 185/307 (60%), Gaps = 13/307 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H VLL + + L +P +D T+G GG+SR ++A+DRDP AV+ Sbjct: 10 HTTVLLHEAVDALVHSPDGYYVDGTYGRGGHSRLILSKLSAAGRLLAIDRDPDAVAHATS 69 Query: 77 TMRDY-KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +F + A +S+L + +GV DG++ D+GVSS QID +RGFSF+ SGP Sbjct: 70 GAARVTDPRFHIEHAPYSELPALLAARGVSRIDGLLLDIGVSSPQIDNPERGFSFRASGP 129 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR-QSAPFQTTQD 190 LDMRM + G SA+D + +A+ +++ ++ GEE+ A+ IA A+V RR P +TT++ Sbjct: 130 LDMRMDPTRGESAADYLARADEREIAAVIRDYGEERFATAIARALVARRLAGRPVRTTEE 189 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ L+ + V + + +PATR+FQALRIFVN E+ +L QGL +A + LK GG L+V+SF Sbjct: 190 LAELVAQAVKTREPGQ-NPATRTFQALRIFVNAELTQLEQGLAAALQCLKPGGRLVVISF 248 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDR+VK F AS S V+ R A P +++ + + P ++VA N R+RSA Sbjct: 249 HSLEDRIVKTFIASHSKAVVDRRAPFAPPA-PMRLRALAR--LKPGADEVAANPRARSAI 305 Query: 311 LRAGMRT 317 LR RT Sbjct: 306 LRVAERT 312 >gi|325519765|gb|EGC99070.1| 16S rRNA m(4)C1402 methyltranserfase [Burkholderia sp. TJI49] Length = 313 Score = 340 bits (873), Expect = 2e-91, Method: Composition-based stats. Identities = 114/311 (36%), Positives = 174/311 (55%), Gaps = 19/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VLL++ + L P V +D TFG GG+SR+ G +IA D+DP A+ Q Sbjct: 7 HRTVLLDEAVESLVTRPDGVYVDGTFGRGGHSRAVLARLGPGGRLIAFDKDPRAIETAQ- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +FS+ +F+ ++D + +GV GV+ DLGVSS Q+D RGFSF+ GPL Sbjct: 66 --GIGDARFSIVHDSFASMRDALAARGVEKVSGVLLDLGVSSPQVDDPARGFSFRADGPL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS----APFQTT 188 DMRM + G SA++ + +A++++LT ++ GEE+ A +IA A+V RR P +T Sbjct: 124 DMRMDPTRGESAAEWLARASLQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDST 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ ++ V + PATR+FQA+RI VN E+ +L L +A L+ GG L+V+ Sbjct: 184 GELAQIVGHAVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVI 242 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDVAFNRRS 306 SFHSLEDR+VK+F + + R + + + I + P + +VA N R+ Sbjct: 243 SFHSLEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPPLKIIGR--QFPGEAEVAANPRA 300 Query: 307 RSAKLRAGMRT 317 RSA +R R Sbjct: 301 RSAVMRIAERV 311 >gi|182414441|ref|YP_001819507.1| S-adenosyl-methyltransferase MraW [Opitutus terrae PB90-1] gi|262824715|sp|B1ZU25|RSMH_OPITP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|177841655|gb|ACB75907.1| S-adenosyl-methyltransferase MraW [Opitutus terrae PB90-1] Length = 306 Score = 340 bits (873), Expect = 2e-91, Method: Composition-based stats. Identities = 119/302 (39%), Positives = 165/302 (54%), Gaps = 6/302 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQET 77 H PVLL +V+ L P LD TFG GG++R+ + + V+ALDRDP A Sbjct: 5 HQPVLLREVLGFLAPRARGRYLDCTFGGGGHTRALLEAAAEVRVVALDRDPAAQPRAAAL 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 + E+F F +L + +P +G DGV+FD GVSS Q+D +RGFSF+ P DMRM Sbjct: 65 RETFGERFEFIDRDFGRLAE-LPHEGFDGVLFDFGVSSFQLDETERGFSFRHDAPADMRM 123 Query: 138 SC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 SG+ AS + A + L R + GEE+ RI AI R + T L+ LI Sbjct: 124 DPRSGVPASQWLETATEEMLVRAIRDFGEEQHWRRIVRAIRDARGTGALARTASLAELIA 183 Query: 197 KTVYF--SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 + +IHPATR+FQ +RI VN+EI + + L +A L GG+L V+SFHSLE Sbjct: 184 AAIPACDRHAAKIHPATRAFQGVRIAVNDEIGAIERALPAAFAKLAPGGVLCVISFHSLE 243 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 DR K+FF G+ + P + + +T++ V P +++A N RSRSAKLRA Sbjct: 244 DRPAKQFFRRMCGQPESAADATPQDLRVKLADPLTRRPVTPADDELAANPRSRSAKLRAL 303 Query: 315 MR 316 R Sbjct: 304 RR 305 >gi|42559428|sp|P60399|RSMH_SPIKU RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|37781879|gb|AAP42766.1| putative S-adenosylmethionine-dependent methyltransferase [Spiroplasma kunkelii CR2-3x] Length = 313 Score = 340 bits (873), Expect = 2e-91, Method: Composition-based stats. Identities = 110/309 (35%), Positives = 163/309 (52%), Gaps = 10/309 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ I+ LN + +D T G G+S K N + ++D A+ +E Sbjct: 4 KHQTVLLQEAISGLNVQNNGIYVDCTLGRAGHSLEILKHLPNGKLYCFEQDEAAIVVSEE 63 Query: 77 TMRDYKEQ-FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 ++ K + + + + F L + + V +G+++DLGVSS Q+D RGFS++ P Sbjct: 64 ILQKSKYRNYEIIKNNFVNLAAELQLRNVKAVNGILYDLGVSSPQLDDDKRGFSYRYDSP 123 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ G++A VVN + + L ++ GEE A IA IV R TT L Sbjct: 124 LDMRMNQHQGLTAKTVVNTYSQEALVKLFQDYGEEPFAKVIAKTIVIARNEQEIVTTFHL 183 Query: 192 SSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+K++ + HPA R FQALRI VN E+ L + LR A L G L+V+SF Sbjct: 184 VEIIKKSLPQKILKKAKHPAKRVFQALRIEVNQELFVLQESLRQATTLLAVHGRLVVISF 243 Query: 251 HSLEDRLVKKFFASRSGKV--MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 HSLEDR+VKK+F S + + + + + + ITKKV+V + + N RSRS Sbjct: 244 HSLEDRIVKKYFQSLTKDPNYEINQQLPAISYFESDYHIITKKVIVSSVTEQTNNHRSRS 303 Query: 309 AKLRAGMRT 317 AKLR R Sbjct: 304 AKLRILERV 312 >gi|307718580|ref|YP_003874112.1| S-adenosyl-methyltransferase MraW [Spirochaeta thermophila DSM 6192] gi|306532305|gb|ADN01839.1| S-adenosyl-methyltransferase MraW [Spirochaeta thermophila DSM 6192] Length = 324 Score = 340 bits (872), Expect = 2e-91, Method: Composition-based stats. Identities = 117/318 (36%), Positives = 175/318 (55%), Gaps = 7/318 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77 HVPVL E+V A L+ +++DAT G GG+S + + G ++ +D DP +S E Sbjct: 8 HVPVLREEVGAFLSVRE-GLVVDATLGEGGHSEALLESRPGIRILGVDADPIMLSRAGER 66 Query: 78 MRDYKEQFSLFQATFSQ-LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + + ++ L Q F + L+ + + G++ DLG+SS ++ RGFSF + PLDMR Sbjct: 67 LSRFGDRVRLVQGWFDEVLESFPAEDRPVGILMDLGISSYHLEKSGRGFSFLRREPLDMR 126 Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 +S + ASDVVN + +L I GEE + RIA AIV R+ P T+ L+ ++ Sbjct: 127 LSPYLPMKASDVVNTYSETELVDIFSRFGEEPFSKRIARAIVSERRKMPITTSDHLAEVV 186 Query: 196 QKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 K V + RIHPATR FQALRI VN E+E + + +R+ + L GG + V+SFHSLE Sbjct: 187 MKAVPPKARRGRIHPATRVFQALRIVVNKELERVERAVRAGVRLLAPGGRMAVISFHSLE 246 Query: 255 DRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 DR+VK+ F +G I + + +TKK V P +E+V N SRSA+LR Sbjct: 247 DRIVKRLFRFYAGACTCPPEEPICRCGGQGIVEVLTKKPVRPGEEEVRANPASRSARLRV 306 Query: 314 GMRTVERSIEDDSFVHLP 331 + + + + LP Sbjct: 307 LEKVRDAAHLREEGHALP 324 >gi|212551099|ref|YP_002309416.1| S-adenosyl-methyltransferase MraW [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|226709918|sp|B6YS33|RSMH_AZOPC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|212549337|dbj|BAG84005.1| S-adenosyl-methyltransferase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 304 Score = 340 bits (872), Expect = 2e-91, Method: Composition-based stats. Identities = 106/309 (34%), Positives = 168/309 (54%), Gaps = 16/309 (5%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72 ++ H+PVLL++ + LN G + +D TFG GG+S+ ++ D+D + Sbjct: 5 SVYHHIPVLLKESVDGLNVCSGGIYVDVTFGGGGHSKEILVRLGNTGHLYGFDQDEDSEK 64 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQK 129 + +F+ ++ F L ++ V DG++ DLGVSS+ D +RGFSF+ Sbjct: 65 NIFSDI-----RFTFVRSNFRYLAHFMDWHNVKEIDGLLADLGVSSIHFDDCNRGFSFRF 119 Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 G LDMRM+ G +A+D++N + L + + GE K ++ IAHAIV+ R QT Sbjct: 120 IGNLDMRMNQRKGETAADILNTYSENKLIDMFDLYGELKNSASIAHAIVQARMQREIQTV 179 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 QD +++ V K + + FQALRI VN E++ L + L A++ L++GG + ++ Sbjct: 180 QDFLDILKPFVRKGKVEK--QLAQIFQALRIEVNKELDALKEMLIQAKQLLRSGGRIAII 237 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 ++HSLEDRLVK FF + S R + P F+ I +V+V + E+V N RSRS Sbjct: 238 TYHSLEDRLVKFFFKTGSFYEKIERDFYGNFLSP--FKIINHRVIVASDEEVKRNPRSRS 295 Query: 309 AKLRAGMRT 317 AKLR + Sbjct: 296 AKLRIAEKI 304 >gi|296116429|ref|ZP_06835043.1| S-adenosyl-methyltransferase MraW [Gluconacetobacter hansenii ATCC 23769] gi|295977022|gb|EFG83786.1| S-adenosyl-methyltransferase MraW [Gluconacetobacter hansenii ATCC 23769] Length = 340 Score = 340 bits (872), Expect = 2e-91, Method: Composition-based stats. Identities = 125/322 (38%), Positives = 177/322 (54%), Gaps = 14/322 (4%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQE 76 G H+PV+L +V+ L P G LD TFG GGY+R+ + A+DRDP A++ G Sbjct: 13 GGHIPVMLAEVLCDLAPRDGATYLDGTFGGGGYARAILSAAECTLWAIDRDPAAIARGAA 72 Query: 77 TMRDYKE-----QFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQ 128 + + + L + F + + +GVD GVV DLGVSS QID +RGFSF+ Sbjct: 73 LATSFPDGQEQSRLRLIKGGFGDMASLLAARGVDALDGVVLDLGVSSYQIDQPERGFSFR 132 Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM G +A+DVVN+ +L I+ GEE+ + R+A AIV R P TT Sbjct: 133 MDGPLDMRMGDEGTTAADVVNRYQESELADIIYTYGEERMSRRVARAIVAARAENPITTT 192 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ +++ V + + I PATR+FQ LRI+VN+E+ ++ +GL A L GG L+VV Sbjct: 193 AALADIVRSVVRADR-SGIDPATRTFQGLRIYVNDELGQIERGLEQALGLLAPGGRLVVV 251 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA----HPAVFQSITKKVVVPTQEDVAFNR 304 SFHSLEDRLVK SG++ P A F+ + K + P+ + N Sbjct: 252 SFHSLEDRLVKLAMNRASGRMPGPSRHDPGAAMQSTQRPAFRLVRNKAIRPSDTECRHNP 311 Query: 305 RSRSAKLRAGMRTVERSIEDDS 326 R+RSA+LR R + D + Sbjct: 312 RARSARLRTVERVMTFPDTDSA 333 >gi|86134334|ref|ZP_01052916.1| MraW methylase family [Polaribacter sp. MED152] gi|85821197|gb|EAQ42344.1| MraW methylase family [Polaribacter sp. MED152] Length = 298 Score = 340 bits (872), Expect = 2e-91, Method: Composition-based stats. Identities = 101/306 (33%), Positives = 168/306 (54%), Gaps = 17/306 (5%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSC 73 + H VLL++ + LN + +D TFG GG+S+ K + A D+DP A++ Sbjct: 1 MSYHNAVLLQESVDGLNIKEDGIYVDVTFGGGGHSKEILKRLGKNGRLFAFDQDPDAINN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + E+F L F + ++ VDG++ DLGVSS Q D +RGFS + Sbjct: 61 AID-----DERFVLIPENFRYISRFLRFHRVKKVDGILADLGVSSHQFDEAERGFSIRFD 115 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 G LDMRM+ S ISA +++N + + L IL + GE + + ++A IV R+++P +T+ Sbjct: 116 GDLDMRMNQKSKISAKEIINNYSEEKLAEILFLYGELRNSRKLARTIVHERKNSPIETSF 175 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +++ + ++ ++I + FQA+RI VN E+E L + L+ L G L V+S Sbjct: 176 QLKEVLKAFLPNAREHKI--LAQIFQAIRIEVNEELEVLKEFLQQVPNLLNDEGRLSVIS 233 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 +HSLEDRLVK+F + + + + ++ P + + K++VP +E++ N R+RSA Sbjct: 234 YHSLEDRLVKRFIRTGLFEGEPEKDVFGNSNEP--LKKV-GKLIVPPKEEIKINNRARSA 290 Query: 310 KLRAGM 315 KLR Sbjct: 291 KLRLAT 296 >gi|114799717|ref|YP_761709.1| S-adenosyl-methyltransferase MraW [Hyphomonas neptunium ATCC 15444] gi|123128411|sp|Q0BXT4|RSMH_HYPNA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|114739891|gb|ABI78016.1| S-adenosyl-methyltransferase MraW [Hyphomonas neptunium ATCC 15444] Length = 342 Score = 340 bits (872), Expect = 2e-91, Method: Composition-based stats. Identities = 149/339 (43%), Positives = 207/339 (61%), Gaps = 9/339 (2%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDP 68 ++ H+PV+L +V+ L PA G+VI+D TFG GGY+ + K V+ +DRD Sbjct: 5 TTPRSPAEPGHLPVMLAEVLTALAPADGEVIVDGTFGGGGYTTAILKAANCTVLGIDRDL 64 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGF 125 A+ E M + F L G VDGVV D+GVSS QID DRGF Sbjct: 65 DAIVRA-EKMAQANPRLVPLLGCFGDLDTLAEQAGHASVDGVVLDIGVSSFQIDQADRGF 123 Query: 126 SFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 SF K GPLDMRM SG SA+DVVN + K L ++ LGEEK + RIA +V+RR APF Sbjct: 124 SFMKDGPLDMRMGGSGPSAADVVNTMSEKGLADVIFRLGEEKNSRRIARVLVQRRVQAPF 183 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 +TT DL++++++ V + R HPAT +FQA+R++VN+E+ ELA+GLR+AE+ LK GG L Sbjct: 184 ETTADLAAVVEEAVGGRRGARSHPATLTFQAIRMYVNDELGELARGLRAAERILKPGGRL 243 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFN 303 +VV+FHSLEDRLVK++ R+G V +P S F+ K V P++++V N Sbjct: 244 VVVTFHSLEDRLVKQWLRERAGAVPGGSRHMPLMSKGPAPAFELQENKAVQPSEKEVETN 303 Query: 304 RRSRSAKLRAGMRTVERSIEDDSF--VHLPRLPTLSQFR 340 R+RSAKLRA +RT + D++ ++LP L L + R Sbjct: 304 PRARSAKLRAAIRTNADAALDEASDGMNLPPLAELEKSR 342 >gi|119478644|ref|ZP_01618547.1| S-adenosyl-methyltransferase [marine gamma proteobacterium HTCC2143] gi|119448421|gb|EAW29672.1| S-adenosyl-methyltransferase [marine gamma proteobacterium HTCC2143] Length = 291 Score = 340 bits (872), Expect = 2e-91, Method: Composition-based stats. Identities = 107/292 (36%), Positives = 169/292 (57%), Gaps = 11/292 (3%) Query: 35 APGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91 P V +D TFG GG+SR +++ +D+DP A++ G E + E+F + + Sbjct: 3 RPAGVYVDGTFGRGGHSRRILTKLDAMGHLLGIDKDPQAIATGNE-LAVIDERFEIVHGS 61 Query: 92 FSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDV 147 F++ + + +G+DGV+ DLGVSS Q+D RGFSF + GPLDMRM+ G+SA++ Sbjct: 62 FAETLELIRLRWPQGIDGVLLDLGVSSPQLDQSQRGFSFLRDGPLDMRMNTDAGMSAAEW 121 Query: 148 VNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRI 207 V A ++ R+L GEE+ A R+A AI+K R ++P +TT L+ ++ + + + Sbjct: 122 VATATESEIARVLKEFGEERFAKRMARAIIKERMASPIETTLHLAKVVAEAHPAWERGK- 180 Query: 208 HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASR-S 266 HPAT++FQA+RI++NNE+ +L Q L A L GG L+V+SFHSLEDR+VK+F Sbjct: 181 HPATKAFQAIRIYINNELGDLRQFLDQALDVLNIGGRLVVISFHSLEDRMVKRFIRHHVR 240 Query: 267 GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318 G + + + + + K V + E++ N RSRSA +R + Sbjct: 241 GDQLPANLPVTVDQLNRRLRQV-GKAVKASAEEIDGNSRSRSAIMRVAEKIA 291 >gi|119717295|ref|YP_924260.1| S-adenosyl-methyltransferase MraW [Nocardioides sp. JS614] gi|262824666|sp|A1SL88|RSMH_NOCSJ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|119537956|gb|ABL82573.1| S-adenosyl-methyltransferase MraW [Nocardioides sp. JS614] Length = 319 Score = 340 bits (872), Expect = 2e-91, Method: Composition-based stats. Identities = 118/308 (38%), Positives = 178/308 (57%), Gaps = 10/308 (3%) Query: 20 HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74 HVPVLL++V+ALL P G V++DAT G GG++ + + V+ +DRDP A++ Sbjct: 6 HVPVLLDRVVALLAPPLEREGSVLVDATLGLGGHTEAVLTRFDLARVVGIDRDPEALALA 65 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + ++F+ A + +L D + G VD V+FDLGVSSMQ+D +RGF++ + Sbjct: 66 GRRLAPFGDRFTGVHAVYDELPDVLARLGLDAVDAVLFDLGVSSMQLDVRERGFAYAEDA 125 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S G +A+DV+N DL RIL GEE+ A +IA A+V+ R PF + Sbjct: 126 PLDMRMDGSTGPTAADVLNTYAAADLARILREYGEERFARKIAAAVVRERAKEPFTRSGR 185 Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L L+ + ++ HPA R+FQALR+ VN+E+ L + + +A A+ GG ++V S Sbjct: 186 LVELLYAEIPAPARRTGGHPAKRTFQALRMEVNDELAVLRRAIPAAIDAIGVGGRVVVES 245 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 +HSLEDRLVK+ F + S + H + +T+ E++A N R+ S Sbjct: 246 YHSLEDRLVKQAFVAASRLDVPEDLPFVPAGHEPALRLVTRGAEKAGPEEIALNPRAASV 305 Query: 310 KLRAGMRT 317 +LRA RT Sbjct: 306 RLRAIERT 313 >gi|312795053|ref|YP_004027975.1| S-adenosyl-methyltransferase mraW [Burkholderia rhizoxinica HKI 454] gi|312166828|emb|CBW73831.1| S-adenosyl-methyltransferase mraW (EC 2.1.1.-) [Burkholderia rhizoxinica HKI 454] Length = 317 Score = 340 bits (872), Expect = 2e-91, Method: Composition-based stats. Identities = 115/324 (35%), Positives = 180/324 (55%), Gaps = 20/324 (6%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 M+SA+ G H VLL++ + L + +D TFG GG+SR+ + +IA D Sbjct: 1 MASAMEKP-GQHRTVLLDEAVDALITRADGIYVDGTFGRGGHSRAVLARLAPAARLIAFD 59 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGD 122 +DP A+ + + ++ +F+QL+D + +G V GV+ DLGVSS QID Sbjct: 60 KDPQAIEVARGIA---DPRLNVVHGSFAQLRDVLAARGGVRVSGVLLDLGVSSPQIDDPA 116 Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF+ GPLDMRM + G SA+ + + ++L ++ GEE+ A +IA AIV RR Sbjct: 117 RGFSFRHDGPLDMRMDPTRGESAAQWLAHVDERELIEVIRDYGEERFAVQIAKAIVARRA 176 Query: 182 S----APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 P T++L+ ++ + V + PATR+FQA+RI +N E+ EL L +A + Sbjct: 177 ESGRLGPIVRTRELAEIVARAVKT-REKGQDPATRTFQAIRIHINQELAELPVVLETALE 235 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVP 295 +L+ GG L+V+SFHSLEDR+VK+FF S + R + ++ + + + V Sbjct: 236 SLEQGGRLVVISFHSLEDRIVKRFFQSHARAPAVDRRLPIRAADLPSPPLRILGR--VFA 293 Query: 296 TQEDVAFNRRSRSAKLRAGMRTVE 319 + +VA N R+RSA +R R + Sbjct: 294 GEAEVAANPRARSAVMRIAERVLA 317 >gi|269956076|ref|YP_003325865.1| S-adenosyl-methyltransferase MraW [Xylanimonas cellulosilytica DSM 15894] gi|269304757|gb|ACZ30307.1| S-adenosyl-methyltransferase MraW [Xylanimonas cellulosilytica DSM 15894] Length = 351 Score = 340 bits (872), Expect = 2e-91, Method: Composition-based stats. Identities = 117/313 (37%), Positives = 182/313 (58%), Gaps = 11/313 (3%) Query: 15 HTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPF 69 T H+PVLLE+ + LL PA PG V++D T G GG++ + +V + +DRDP Sbjct: 8 STADRHLPVLLERCVDLLAPALAEPGSVLVDCTLGMGGHTEGVLERLPHVHVVGIDRDPQ 67 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVP----DKGVDGVVFDLGVSSMQIDCGDRGF 125 A+ + + ++F+ A + ++ D V D GV GV+ DLGVSS+Q+D RGF Sbjct: 68 ALRLAAARLARFGDRFTPVHAVYDEIGDVVARLGYDDGVQGVLMDLGVSSLQLDEAGRGF 127 Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 ++ + PLDMRM + G +A+DV+N + +LTRIL GEE+ A +IA +IV+RR P Sbjct: 128 AYAQDAPLDMRMDQTTGPTAADVLNTYDEHELTRILREYGEERFAGKIARSIVRRRAERP 187 Query: 185 FQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 ++ T +L L++ + + + +PA R+FQALRI VN E+E L + + +A +AL GG Sbjct: 188 WERTAELVDLVRACIPAATRKTGGNPAKRTFQALRIEVNGELEVLERAVPAAIEALAVGG 247 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 ++V S+HSLEDR+VK+ A + + H A +++T+ ++A N Sbjct: 248 RIVVESYHSLEDRIVKRAIARGTTSSAPPGLPVEPETHRAYLEALTRGAEEADDAELARN 307 Query: 304 RRSRSAKLRAGMR 316 RS S +LRA R Sbjct: 308 PRSASVRLRAAAR 320 >gi|111018109|ref|YP_701081.1| S-adenosyl-methyltransferase [Rhodococcus jostii RHA1] gi|123340963|sp|Q0SHR3|RSMH_RHOSR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|110817639|gb|ABG92923.1| S-adenosyl-methyltransferase [Rhodococcus jostii RHA1] Length = 338 Score = 339 bits (871), Expect = 3e-91, Method: Composition-based stats. Identities = 115/322 (35%), Positives = 175/322 (54%), Gaps = 18/322 (5%) Query: 20 HVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69 H+PVLL + LL PA G V++DAT G GG+S F + +IALDRDP Sbjct: 17 HIPVLLHRADELLGPALTVNDPQGGGAVMIDATLGLGGHSEHFLRTYPQLRLIALDRDPH 76 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSSMQIDCGDR 123 A+ + + ++ + + ++D + G V G++FDLGVSSMQ+D DR Sbjct: 77 ALEIAGGRLAPFADRITFVHTRYDGIEDALDQAGLPAQESVHGILFDLGVSSMQLDESDR 136 Query: 124 GFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GF++ PLDMRM + GI+A++V+N + DL RIL GEE+ A +IA IV++R Sbjct: 137 GFAYSIDAPLDMRMDPTTGITAAEVLNTYSHGDLARILSTYGEERFAGKIASEIVRQRAK 196 Query: 183 APFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 PF T+ L L+ +++ + + HPA R+FQALR+ VN E++ L + +A AL Sbjct: 197 EPFTTSAALVELLYRSIPAATRRTGGHPAKRTFQALRVEVNGELDSLRAAVPAALDALTV 256 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 GG ++ +S+ SLEDR+VK+ RS + F+ +T+ ++++V Sbjct: 257 GGRVVFMSYQSLEDRVVKQEITPRSKSKSPEGLPVELPGMGPEFRILTRGAERASEQEVE 316 Query: 302 FNRRSRSAKLRAGMRTVERSIE 323 N RS +LRA R RS Sbjct: 317 ENPRSAPVRLRAAERIARRSAA 338 >gi|322436313|ref|YP_004218525.1| S-adenosyl-methyltransferase MraW [Acidobacterium sp. MP5ACTX9] gi|321164040|gb|ADW69745.1| S-adenosyl-methyltransferase MraW [Acidobacterium sp. MP5ACTX9] Length = 297 Score = 339 bits (871), Expect = 3e-91, Method: Composition-based stats. Identities = 129/313 (41%), Positives = 176/313 (56%), Gaps = 28/313 (8%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72 T HVPVLLE+ + LN PG V +DAT G GG+S + K +IA DRDP A+S Sbjct: 2 TPQQHVPVLLEEALEYLNVRPGGVYVDATLGLGGHSSAIAKKLGGQGKLIAFDRDPDAMS 61 Query: 73 CGQETMRDYKEQ-------FSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125 Q + KE+ FS+ D + +DG++ D GVSSMQ+D RGF Sbjct: 62 KAQARLEALKEELGAEMPTVQFEPRAFSEAGDAIAKGSLDGLLADFGVSSMQLDEAHRGF 121 Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF+ GPLDMRM SG +A VVN+ + +L ++ GEE+++ RIA AIV+ R P Sbjct: 122 SFRSDGPLDMRMDTRSGETAGQVVNEEDENELADLIYEFGEERRSRRIARAIVRAR---P 178 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 TT +L+ +I K ++IHPATR+FQA+R+ VN+E+ E+ L+SA LK GG Sbjct: 179 ISTTAELARIISAAAPPMKGDKIHPATRTFQAIRMRVNDELGEIQSLLKSAGSLLKPGGR 238 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 L+++SFHSLEDRLVK F F +TKK V+ +++ N Sbjct: 239 LVMISFHSLEDRLVKDAFREL--------------GRDKKFTVLTKKPVIAAEQESLRNP 284 Query: 305 RSRSAKLRAGMRT 317 RSRSAKLRA + Sbjct: 285 RSRSAKLRALEKV 297 >gi|311248051|ref|XP_003122950.1| PREDICTED: probable S-adenosyl-L-methionine-dependent methyltransferase METT5D1-like [Sus scrofa] Length = 405 Score = 339 bits (871), Expect = 3e-91, Method: Composition-based stats. Identities = 129/335 (38%), Positives = 186/335 (55%), Gaps = 38/335 (11%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H+PV++++V+ L P G+ LD TFG+GG++++ + S+ + ALDRDP A + ++ Sbjct: 70 HIPVMVDEVVHCLAPQKGQFFLDMTFGSGGHTKAILQKESDIILYALDRDPTAYAIAEQL 129 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 Y +Q FSQ + + GV DGV+ DLG SSMQ+D +RGFS +K GP Sbjct: 130 SEVYPKQIRALLGQFSQAEALLMKAGVQPGTLDGVLLDLGCSSMQLDSPERGFSLRKDGP 189 Query: 133 LDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM +A+DVVN + L IL GEEK A +IA AIV+ R P T Sbjct: 190 LDMRMDGGRYPDMPTAADVVNALDQHALASILRAYGEEKHAKKIASAIVQARSIYPITRT 249 Query: 189 QDLSSLIQKTVYFSK--------NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 Q L+S++ S H AT++FQA RIFVNNE+ EL GL++A+K L+ Sbjct: 250 QQLASIVAGAFPPSAIYARKDLLQRSTHIATKTFQAFRIFVNNELNELYTGLKTAQKFLR 309 Query: 241 AGGLLIVVSFHSLEDRLVKKFF-------------------ASRSGKVMAVRHMIPSNAH 281 GG L+ +SFHSLEDR++K+F S+ G + + I + Sbjct: 310 PGGRLVALSFHSLEDRIIKRFLLGISMTERFNLSARQKVIQKSQLGSSLENKEGISTGKA 369 Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 P +++ + KKV+ P +DV N R RSAKLRA ++ Sbjct: 370 PLMWKLLHKKVLTPEDQDVQDNPRGRSAKLRAAIK 404 >gi|217979581|ref|YP_002363728.1| S-adenosyl-methyltransferase MraW [Methylocella silvestris BL2] gi|263456483|sp|B8ETL4|RSMH_METSB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|217504957|gb|ACK52366.1| S-adenosyl-methyltransferase MraW [Methylocella silvestris BL2] Length = 346 Score = 339 bits (871), Expect = 3e-91, Method: Composition-based stats. Identities = 148/330 (44%), Positives = 195/330 (59%), Gaps = 8/330 (2%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQE 76 H+PVL ++++ L P + LDATFGAGGYSR G+ V+A+DRDP A++ G Sbjct: 17 ARHIPVLRDEILELAAPQADGLYLDATFGAGGYSRGLLATQGARVLAIDRDPGAIAAGAG 76 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + + +L +A FS L G D +FD+GVSSMQ+D RGFSF+ GPL Sbjct: 77 LIAESNGRLTLVEARFSDLAAVAERLGLGAFDAALFDIGVSSMQLDEAARGFSFRFDGPL 136 Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 DMRM SG SA+D+VN A+ + L IL GEE+ + RIA AIV R APF++T L++ Sbjct: 137 DMRMQQSGPSAADIVNDADEEALADILYYFGEERASRRIAKAIVMDRAKAPFRSTAALAA 196 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 +I + K IHPATRSFQALRI VN+E+ EL GL AE LK GG L VV+FHSL Sbjct: 197 MIARVCP-GKPGDIHPATRSFQALRIAVNDELGELVAGLAGAEARLKPGGRLAVVTFHSL 255 Query: 254 EDRLVKKFFASRSGKVMAV--RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 EDR+VK FFA RSG+ A R P F ++ V P+ ++A N R+RSAKL Sbjct: 256 EDRIVKLFFAGRSGRGEAPSRRLPGEPIPPPPTFAVSGRQPVTPSAAEIAANPRARSAKL 315 Query: 312 RAGMRTVERSIEDD-SFVHLPRLPTLSQFR 340 R G+RT + + L LP + Sbjct: 316 RHGVRTSAPARAPGRDLMALAALPQRAAKG 345 >gi|315223498|ref|ZP_07865354.1| S-adenosyl-methyltransferase MraW [Capnocytophaga ochracea F0287] gi|314946533|gb|EFS98525.1| S-adenosyl-methyltransferase MraW [Capnocytophaga ochracea F0287] Length = 304 Score = 339 bits (871), Expect = 3e-91, Method: Composition-based stats. Identities = 107/311 (34%), Positives = 158/311 (50%), Gaps = 17/311 (5%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPF 69 +++ H PVLL + I LN +D TFG GG+SR K + A D+D Sbjct: 1 MNNNTPYHTPVLLTQSIEGLNIKDNGTYVDVTFGGGGHSREILKHLGKNGRLYAFDQDAD 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFS 126 A++ + E+F+L Q F L+ Y+ GV DGV+ D GVSS Q D RGFS Sbjct: 61 ALNNTID-----DERFTLIQQNFKYLRQYLRFYGVTQVDGVLGDFGVSSHQFDVAQRGFS 115 Query: 127 FQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 + G LDMRM+ +SA +VVN+ +LT I GE K A IA AI+ R+ P Sbjct: 116 TRFEGTLDMRMNQQAPLSAQEVVNEYGEIELTHIFFQYGELKNAKAIARAIISYREQKPI 175 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 + +L ++ + K N++ + +QA+RI VN EIE L L +K G + Sbjct: 176 RLGSELQEAVKTLLPKFKENKV--LAQIYQAIRIEVNAEIEALESFLLQLPAVVKPQGRI 233 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 ++S+HSLEDR VK+F + + + + P F+ + ++ P ++A N R Sbjct: 234 SLISYHSLEDRCVKRFIRDGQLEGAPEKDWYGNVSVP--FKKV-GGLITPDDTEIAQNSR 290 Query: 306 SRSAKLRAGMR 316 +RSAKLR R Sbjct: 291 ARSAKLRIAER 301 >gi|254515249|ref|ZP_05127310.1| S-adenosyl-methyltransferase MraW [gamma proteobacterium NOR5-3] gi|219677492|gb|EED33857.1| S-adenosyl-methyltransferase MraW [gamma proteobacterium NOR5-3] Length = 308 Score = 339 bits (870), Expect = 3e-91, Method: Composition-based stats. Identities = 115/309 (37%), Positives = 168/309 (54%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 H VLL + + L +P + +D TFG GG+SR K + A D+D A Sbjct: 2 AAPHETVLLHEAVDSLVSSPAGLYVDGTFGRGGHSREILKRLNDDGRLFACDKDEEAERD 61 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 E + +FS + +F+ L + G V G++ DLGVSS Q+D +RGFSFQ Sbjct: 62 ALE-LAGEDGRFSFARGSFAALPALLAQHGLGPVHGILLDLGVSSPQLDQAERGFSFQHD 120 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 GPLDMRM S G SA+D + A+ +++ +L GEE+ A RIA AIV+ R P T Sbjct: 121 GPLDMRMDRSRGESAADWIASASEQEIIDVLREYGEERFARRIAGAIVRARAETPLTRTS 180 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L++++ + + ++ HPATR+FQA+RI VN E+++LA+ L A L GG L+V+S Sbjct: 181 QLAAIVSEAHPRWEKHK-HPATRAFQAIRIRVNRELDDLAELLSVALSVLAVGGRLVVIS 239 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRLVK+ S R++ + + K ++E+VA N RSRSA Sbjct: 240 FHSLEDRLVKRHLRDMSRGPQLPRNLPVRDVESGAQMRLLGKAQRASKEEVAGNPRSRSA 299 Query: 310 KLRAGMRTV 318 +R + Sbjct: 300 IMRCAEKLA 308 >gi|284929250|ref|YP_003421772.1| S-adenosyl-methyltransferase MraW [cyanobacterium UCYN-A] gi|284809694|gb|ADB95391.1| S-adenosyl-methyltransferase MraW [cyanobacterium UCYN-A] Length = 298 Score = 339 bits (870), Expect = 3e-91, Method: Composition-based stats. Identities = 118/302 (39%), Positives = 163/302 (53%), Gaps = 27/302 (8%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 H+PVL +++I L PG + LDAT G GG+S NV I +D D A+ + Sbjct: 16 HIPVLSQELIEGLAIKPGGIYLDATLGRGGHSNLILSTFPNVQVIGIDLDDDAILNTKTN 75 Query: 78 MRD-YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 M K++F + F + + DG++ DLGVSS Q+D +RGFSF+ LDMR Sbjct: 76 MSSSMKQRFQTWAGNFKDYPGKIEE--FDGIIADLGVSSPQLDNPERGFSFRHEASLDMR 133 Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M+ ++A +++N + L I GEEK++ IA +V+ R PF TT DL+S I Sbjct: 134 MNREQSLTAEEIINHWSEITLANIFYQYGEEKRSRSIARYLVENR---PFFTTTDLASAI 190 Query: 196 QKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 K + RIHPATR FQALRI VN+E+ L + L+ + LK G + ++SFHSLE Sbjct: 191 SKVFPPKYRYGRIHPATRVFQALRIIVNDELTSLEKFLQQSPSWLKPQGNIGIISFHSLE 250 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 DR+VK F S + ITKK ++P QE+ NRRSRSAKLR Sbjct: 251 DRIVKHTFRDSS-----------------LLDVITKKPIIPKQEEKYNNRRSRSAKLRFA 293 Query: 315 MR 316 R Sbjct: 294 KR 295 >gi|302868932|ref|YP_003837569.1| S-adenosyl-methyltransferase MraW [Micromonospora aurantiaca ATCC 27029] gi|302571791|gb|ADL47993.1| S-adenosyl-methyltransferase MraW [Micromonospora aurantiaca ATCC 27029] Length = 391 Score = 339 bits (870), Expect = 4e-91, Method: Composition-based stats. Identities = 114/333 (34%), Positives = 184/333 (55%), Gaps = 11/333 (3%) Query: 1 MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNP---APGKVI-LDATFGAGGYSRSFCK 56 + + + + G HVPVLLE+ + LL P PG+ + +DAT G G++ + Sbjct: 11 VTERLANGVGVEMGELRGTHVPVLLERCLELLAPALGRPGRTVHVDATLGLAGHAEAVLS 70 Query: 57 MGSN--VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDL 111 + +I LDRD A++ + + + ++ L A + +L + + G +DGV+FDL Sbjct: 71 AHPDTVLIGLDRDTEALAHARVRLARFADRIHLEHAVYDELPEVLDRLGYPAIDGVLFDL 130 Query: 112 GVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQAS 170 GVSS+Q+D DRGF++ + PLDMRM + G++A +VVN + DL R+L + GEEK A Sbjct: 131 GVSSLQLDAPDRGFAYAQDAPLDMRMDQTRGVTAEEVVNTYSHPDLARLLRVYGEEKFAG 190 Query: 171 RIAHAIVKRRQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELA 229 +IA AI++ R+ ++ L+ L++ + ++ HPA R+FQALRI VN E+ L Sbjct: 191 KIASAIIRERERNRITSSARLAELVRDAIPAPARRTGGHPAKRTFQALRIEVNRELAALE 250 Query: 230 QGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT 289 L +A L GG ++V+S+HSLEDRL K+ A R V + F+ ++ Sbjct: 251 TALPAALDKLTVGGRMVVLSYHSLEDRLTKQALADRVRSKGPVDLPVELPGSGPTFRLLS 310 Query: 290 KKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSI 322 + +P + +VA N R+ S +LRA R + Sbjct: 311 RGAELPGEAEVAANPRAASVRLRAAERLDPEAA 343 >gi|221065130|ref|ZP_03541235.1| S-adenosyl-methyltransferase MraW [Comamonas testosteroni KF-1] gi|220710153|gb|EED65521.1| S-adenosyl-methyltransferase MraW [Comamonas testosteroni KF-1] Length = 309 Score = 339 bits (870), Expect = 4e-91, Method: Composition-based stats. Identities = 124/311 (39%), Positives = 179/311 (57%), Gaps = 17/311 (5%) Query: 20 HVPVLLEKVIALL----NPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72 H+ VLL++ + L P +DATFG GG+SR + +IA D+DP A++ Sbjct: 7 HITVLLDEAVDALLGGAAEPPAGQWVDATFGRGGHSRLILRRLGPDGRLIAFDKDPDAIA 66 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E R +FS+ F L + +P+ V GV+ DLGVSS QID DRGFSF+ GP Sbjct: 67 ---EAARITDARFSIRHEGFRHLSE-LPEGSVQGVLMDLGVSSPQIDNPDRGFSFRFDGP 122 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ-SAPFQTTQD 190 LDMRM + G S ++ + A V+ + ++ GEE+ A IA AIV RR+ P +TT + Sbjct: 123 LDMRMDTTRGQSVAEWLEDAEVQQIAEVIRDYGEERFAGPIAKAIVARRESQGPLRTTAE 182 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ L+ V + +PATR+FQALRIF+N E++EL Q L ++ + L GG L V+SF Sbjct: 183 LAQLVAGAVKT-REAGQNPATRTFQALRIFINAELQELEQALEASLRVLAPGGRLAVISF 241 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDR+VK+F A S +V R + P +++ + + P+ +VA N RSRSA Sbjct: 242 HSLEDRIVKQFIAKHSKEVY-DRRAPFAPPTPMRLKALER--IKPSAAEVAANPRSRSAV 298 Query: 311 LRAGMRTVERS 321 +R RT + Sbjct: 299 MRVAERTEVPA 309 >gi|206889537|ref|YP_002249141.1| S-adenosyl-methyltransferase MraW [Thermodesulfovibrio yellowstonii DSM 11347] gi|262825898|sp|B5YFU3|RSMH_THEYD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|206741475|gb|ACI20532.1| S-adenosyl-methyltransferase MraW [Thermodesulfovibrio yellowstonii DSM 11347] Length = 292 Score = 339 bits (870), Expect = 4e-91, Method: Composition-based stats. Identities = 118/305 (38%), Positives = 180/305 (59%), Gaps = 26/305 (8%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H+PV++++VI LLNP G + +DAT G GG+S + K +I +DRD A+ Sbjct: 7 HIPVMVKEVIQLLNPY-GGIYVDATLGCGGHSLAILKRLSPDGRLIGIDRDESAIFYANR 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + D + L +A+FS L++ + + + +DG++FDLGVS +Q+ +RGFSF L Sbjct: 66 ILDD--SRVILRKASFSHLKEVLSELNIEKIDGIIFDLGVSMLQLKDFERGFSFHSEERL 123 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + ++A DVVN+ + LT+I G+E A RIA I+++R T ++L+ Sbjct: 124 DMRMDQTEPLTAWDVVNKYPEQKLTQIFRDYGDEPFARRIAREIIRQRGKKTIDTCKELA 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 L++KTV ++ R+HPAT+ FQA+RI VN E EEL QGL A + L +GG + V+S+HS Sbjct: 184 DLVKKTVP--RHGRLHPATQIFQAIRIEVNREFEELRQGLLQAVELLNSGGRICVISYHS 241 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 EDR+VK FF + +TKK ++P+ E+VA N +RSA+LR Sbjct: 242 GEDRVVKNFFRE--------------EEQKGNLRILTKKPLLPSLEEVAKNPSARSARLR 287 Query: 313 AGMRT 317 G + Sbjct: 288 GGEKI 292 >gi|39939221|ref|NP_950987.1| hypothetical protein PAM_735 [Onion yellows phytoplasma OY-M] gi|39722330|dbj|BAD04820.1| conserved hypothetical protein [Onion yellows phytoplasma OY-M] Length = 342 Score = 339 bits (870), Expect = 4e-91, Method: Composition-based stats. Identities = 106/312 (33%), Positives = 167/312 (53%), Gaps = 14/312 (4%) Query: 12 AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPF 69 +++ T +H+ VL ++ I L P + +DAT G G++ + + + D+D Sbjct: 38 SMNKTHFNHISVLKQEAIDFLKIKPEGIYVDATLGQCGHTIEIANLLQQGFLYSFDQDVE 97 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFS 126 A + ++ + + + + FS L+ + + V DG++FDLG+SS QID RGFS Sbjct: 98 ACTNAKKILPPHLP-IEIIHSNFSHLKTQLAQRNVFQLDGILFDLGLSSCQIDNPQRGFS 156 Query: 127 FQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 + + PLDMRM+ I+A ++N + L I + GE K A+ +A I+K+R P Sbjct: 157 YLHNTPLDMRMNVNQTITAQYILNNYSFAQLKNIFKVYGEVKNAALVASEIIKQR---PL 213 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 T+ DL ++ T F + H A + FQALRI VN E+E L Q L + LK ++ Sbjct: 214 CTSYDLVAI---TDRFCNRQKGHSAKKIFQALRIEVNQELESLKQALEQSLDLLKPNAMI 270 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 +V+SFHSLEDR+VK FF S V+ + I ITKK +P++E++ N R Sbjct: 271 VVISFHSLEDRIVKHFFKKNSTFVLPKKMPITI-MPQTPLSIITKKAFLPSEEEMQNNSR 329 Query: 306 SRSAKLRAGMRT 317 S SAKLR ++ Sbjct: 330 SISAKLRVAVKN 341 >gi|161526013|ref|YP_001581025.1| S-adenosyl-methyltransferase MraW [Burkholderia multivorans ATCC 17616] gi|189349270|ref|YP_001944898.1| S-adenosyl-methyltransferase MraW [Burkholderia multivorans ATCC 17616] gi|263446911|sp|A9AJ24|RSMH_BURM1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|160343442|gb|ABX16528.1| S-adenosyl-methyltransferase MraW [Burkholderia multivorans ATCC 17616] gi|189333292|dbj|BAG42362.1| S-adenosyl-methyltransferase [Burkholderia multivorans ATCC 17616] Length = 313 Score = 339 bits (870), Expect = 4e-91, Method: Composition-based stats. Identities = 112/310 (36%), Positives = 174/310 (56%), Gaps = 19/310 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H VLL++ + L P + +D TFG GG+SR+ +IA D+DP A+ Q Sbjct: 7 HRTVLLDEAVESLVTRPDGIYVDGTFGRGGHSRAVLARLGPAGRLIAFDKDPRAIETAQ- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +FS+ +F+ ++D + +G V GV+ DLGVSS Q+D RGFSF+ GPL Sbjct: 66 --GIGDARFSIVHDSFASMRDALAARGIEKVSGVLLDLGVSSPQVDDPARGFSFRADGPL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS----APFQTT 188 DMRM + G SA++ + +A++++LT ++ GEE+ A +IA A+V RR P +T Sbjct: 124 DMRMDPTRGESAAEWLARASLQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDST 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ ++ V + PATR+FQA+RI VN E+ +L L +A L+ GG L+V+ Sbjct: 184 GELAQIVGHVVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVI 242 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDVAFNRRS 306 SFHSLEDR+VK+F + + R + + + I + P++ +VA N R+ Sbjct: 243 SFHSLEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPPLKIIGR--QFPSEAEVAANPRA 300 Query: 307 RSAKLRAGMR 316 RSA +R R Sbjct: 301 RSAVMRIAER 310 >gi|197101179|ref|NP_001126687.1| probable methyltransferase-like protein 15 [Pongo abelii] gi|75054772|sp|Q5R5T5|MET15_PONAB RecName: Full=Probable methyltransferase-like protein 15; AltName: Full=Methyltransferase 5 domain-containing protein 1 gi|55732357|emb|CAH92881.1| hypothetical protein [Pongo abelii] Length = 407 Score = 339 bits (870), Expect = 4e-91, Method: Composition-based stats. Identities = 129/335 (38%), Positives = 187/335 (55%), Gaps = 38/335 (11%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H+PV++++V+ L+P G++ LD TFG+GG++++ + S+ + ALDRDP A + + Sbjct: 72 HIPVMVDEVLHCLSPQKGQIFLDMTFGSGGHTKAILQKESDIVLYALDRDPTAYALAEHL 131 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 Y +Q FSQ + + GV DGV+ DLG SSMQ+D +RGFS +K GP Sbjct: 132 SELYPKQIRAMLGQFSQAETLLMKAGVQPGTFDGVLMDLGCSSMQLDTPERGFSLRKDGP 191 Query: 133 LDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM +A+DVVN + + L IL GEEK A +IA AIV+ R P T Sbjct: 192 LDMRMDGGRYPDMPTAADVVNAFDQQALASILRTYGEEKHAKKIASAIVQARSIYPITRT 251 Query: 189 QDLSSLIQKTVYFSK--------NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 Q L+S++ S H AT++FQA+RIFVNNE+ EL GL++A+K L+ Sbjct: 252 QQLASIVAGAFPPSAIYARKDLLQRSTHIATKTFQAVRIFVNNELNELYMGLKTAQKFLR 311 Query: 241 AGGLLIVVSFHSLEDRLVKKFF-------------------ASRSGKVMAVRHMIPSNAH 281 GG L+ +SFHSLEDR++K+F S+ G + Sbjct: 312 PGGRLVALSFHSLEDRIIKRFLLGISMTERFNLSVRQQVMKTSQLGSDHENTEEVSKRRA 371 Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 P +++ I KKV+ P +DV N R+RSAKLRA ++ Sbjct: 372 PLMWELIHKKVLSPQDQDVQDNPRARSAKLRAAIK 406 >gi|315504598|ref|YP_004083485.1| s-adenosyl-methyltransferase mraw [Micromonospora sp. L5] gi|315411217|gb|ADU09334.1| S-adenosyl-methyltransferase MraW [Micromonospora sp. L5] Length = 391 Score = 339 bits (869), Expect = 5e-91, Method: Composition-based stats. Identities = 114/333 (34%), Positives = 184/333 (55%), Gaps = 11/333 (3%) Query: 1 MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNP---APGKVI-LDATFGAGGYSRSFCK 56 + + + + G HVPVLLE+ + LL P PG+ + +DAT G G++ + Sbjct: 11 VTERLANGVGVEMGELRGTHVPVLLERCLELLAPALGRPGRTVHVDATLGLAGHAEAVLS 70 Query: 57 MGSN--VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDL 111 + +I LDRD A++ + + + ++ L A + +L + + G +DGV+FDL Sbjct: 71 AHPDTVLIGLDRDTEALAHARVRLARFADRIHLEHAVYDELPEVLDRLGYPAIDGVLFDL 130 Query: 112 GVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQAS 170 GVSS+Q+D DRGF++ + PLDMRM + G++A +VVN + DL R+L + GEEK A Sbjct: 131 GVSSLQLDAPDRGFAYAQDAPLDMRMDQTRGVTAEEVVNTYSHPDLARLLRVYGEEKFAG 190 Query: 171 RIAHAIVKRRQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELA 229 +IA AI++ R+ ++ L+ L++ + ++ HPA R+FQALRI VN E+ L Sbjct: 191 KIASAIIRERERNRITSSARLAELVRDAIPAPARRTGGHPAKRTFQALRIEVNRELAALE 250 Query: 230 QGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT 289 L +A L GG ++V+S+HSLEDRL K+ A R V + F+ ++ Sbjct: 251 TALPAALDKLTVGGRMVVLSYHSLEDRLTKQALADRVRSKGPVDLPVELPGSGPTFRLLS 310 Query: 290 KKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSI 322 + +P + +VA N R+ S +LRA R + Sbjct: 311 RGAELPGEAEVAANPRAASVRLRAAERLDPEAA 343 >gi|297571245|ref|YP_003697019.1| S-adenosyl-methyltransferase MraW [Arcanobacterium haemolyticum DSM 20595] gi|296931592|gb|ADH92400.1| S-adenosyl-methyltransferase MraW [Arcanobacterium haemolyticum DSM 20595] Length = 336 Score = 339 bits (869), Expect = 5e-91, Method: Composition-based stats. Identities = 114/330 (34%), Positives = 174/330 (52%), Gaps = 11/330 (3%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGK--VILDATFGAGGYSRSFCKMGS--NVIAL 64 MS + HVPVLL+ +I +L PA V++D T G GG+S +F + VI + Sbjct: 1 MSKTADNN-ALHVPVLLQPIIDMLGPALEGDSVLIDCTLGMGGHSEAFLRTFPSLRVIGI 59 Query: 65 DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDC 120 DRD A+ + + ++F T+ + G VD ++ DLGVSS+Q+D Sbjct: 60 DRDEQAIELASARLAPFGDRFQAVHTTYDDVDRVAFTYGKSGCVDAILMDLGVSSLQLDE 119 Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 DRGFS+ + PLDMRM S G++A +++N + ++ RIL + GEEK AS+IA AIVKR Sbjct: 120 VDRGFSYSQDAPLDMRMDTSKGMTAGELLNSYSHGEIARILRVYGEEKFASQIARAIVKR 179 Query: 180 RQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R+ P + T++L+ L++ T+ ++ +P+ R+FQALR+ VNNE++ L + A +A Sbjct: 180 REDHPLERTRELADLVRDTIPAPARRKGGNPSKRTFQALRVAVNNELDVLEAAVPRALEA 239 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L+ GG + V S+ SLEDR+VK F I H +T+ + Sbjct: 240 LRVGGRIAVESYQSLEDRIVKDAFNVGLTSTSPAGLPIELADHAPYLAPLTRGAFKADRT 299 Query: 299 DVAFNRRSRSAKLRAGMRTVERSIEDDSFV 328 + N RS S +LR R D Sbjct: 300 EQELNPRSASVRLRGAERLRPTPSHIDQPF 329 >gi|325286918|ref|YP_004262708.1| Ribosomal RNA small subunit methyltransferase H [Cellulophaga lytica DSM 7489] gi|324322372|gb|ADY29837.1| Ribosomal RNA small subunit methyltransferase H [Cellulophaga lytica DSM 7489] Length = 298 Score = 339 bits (869), Expect = 5e-91, Method: Composition-based stats. Identities = 103/307 (33%), Positives = 165/307 (53%), Gaps = 17/307 (5%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSC 73 + H PVLL++ + L+ V +D TFG GG+SR +I D+D A++ Sbjct: 1 MSYHNPVLLKESVDGLSIKEDGVYVDVTFGGGGHSREILSRLGEKGRLIGFDQDEDALAN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + ++F L F ++ ++ G VDG++ D GVSS Q D +RGFS + Sbjct: 61 ALD-----DDRFLLINENFRYIKQFLKFHGIRKVDGILGDFGVSSHQFDKAERGFSTRFD 115 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRMS + +SA DVVN DL R+L G+ + A+ +A+ I+ RQ +TT Sbjct: 116 ADLDMRMSQKNTVSAFDVVNNYEYNDLRRVLFQYGDLRSANAMANTIIDYRQEGEIKTTD 175 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +++K + K ++I + +QA+RI VN EI+ + + L L GG L ++S Sbjct: 176 QLKQVLKKFLPAFKEHKI--LAQIYQAIRIEVNQEIQVIKEFLEQTNDLLVEGGRLSLIS 233 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 +HSLEDRLVK++ + + + + P F+ + ++VP++E++A N R+RSA Sbjct: 234 YHSLEDRLVKRYIRAGKFEGEPEKDFYGNIDVP--FKKV-GGLIVPSKEEIAVNNRARSA 290 Query: 310 KLRAGMR 316 KLR R Sbjct: 291 KLRIAER 297 >gi|126735371|ref|ZP_01751117.1| S-adenosyl-methyltransferase MraW [Roseobacter sp. CCS2] gi|126715926|gb|EBA12791.1| S-adenosyl-methyltransferase MraW [Roseobacter sp. CCS2] Length = 297 Score = 339 bits (869), Expect = 5e-91, Method: Composition-based stats. Identities = 131/293 (44%), Positives = 180/293 (61%), Gaps = 8/293 (2%) Query: 42 DATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP 100 D TFG GGY+R+ G++ VI +DRDP A + + DY ++ FS+L +Y Sbjct: 2 DGTFGNGGYTRALLAAGADKVIGVDRDPLAFEMAADWIGDYGDRIKTVAGVFSKLDEYGA 61 Query: 101 DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRIL 160 D +DGVV DLGVSSMQ+D +RGFSF + GPLDMRMS G SA+D+ N A+ +L I+ Sbjct: 62 D--LDGVVLDLGVSSMQLDLAERGFSFMRDGPLDMRMSQDGPSAADLCNDADEAELADII 119 Query: 161 GILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIF 220 + GEE+ + RIA AIV R P TT L+ +++ + SK + HPATR+FQALRI Sbjct: 120 YLYGEERASRRIAKAIVDAR---PLTTTLQLAKIVEGCLPRSKPGQSHPATRTFQALRIA 176 Query: 221 VNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA 280 VNNE ELA+GL +AE+ALK G L VV+FHS+EDR+VK+F +RSG P Sbjct: 177 VNNEYGELAEGLMAAERALKPDGQLAVVTFHSVEDRMVKRFLQARSGNTANANRYAPEIE 236 Query: 281 H-PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIE-DDSFVHLP 331 ++ +K + P + ++A N RSRSAKLR RT + D + + +P Sbjct: 237 QVTPAWRIEKRKAIGPDEAELAENPRSRSAKLRVASRTDAPAEPIDPAKLGMP 289 >gi|255536597|ref|YP_003096968.1| S-adenosyl-methyltransferase mraW [Flavobacteriaceae bacterium 3519-10] gi|255342793|gb|ACU08906.1| S-adenosyl-methyltransferase mraW [Flavobacteriaceae bacterium 3519-10] Length = 297 Score = 339 bits (869), Expect = 5e-91, Method: Composition-based stats. Identities = 105/305 (34%), Positives = 160/305 (52%), Gaps = 17/305 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H PVLL + + L P + +D TFG GG+S + + + + D+D A+ E Sbjct: 3 HNPVLLTRSVDDLVTNPDGIYVDVTFGGGGHSAAILRKLSSKGRLFSFDQDLDALKNTIE 62 Query: 77 TMRDYKEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++F+L F L++ + KGVDGV+ DLGVSS Q D +RGFS + PL Sbjct: 63 -----DDRFTLINQNFRFLENSLMVYGIKGVDGVLADLGVSSHQFDAAERGFSTRSDAPL 117 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ + A V+N+ + L I GE ++A ++A IV R+ P +TT+DL Sbjct: 118 DMRMNVLQPLDAKKVINEYEEEQLADIFYYYGELREARKLAREIVHHRKLKPIETTEDLK 177 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 L F +N + FQA+RI VN E+E L + L + LK G L+V+S+HS Sbjct: 178 KLFSYIPQFKQN---KFFAQVFQAVRIEVNQELEVLKEMLVQSYNILKPNGRLVVISYHS 234 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDRLVK++ + + R + F+ + K V+P ++ N R+RSAK+R Sbjct: 235 LEDRLVKRYLKNGMFEGEPARDI--YGNFQKTFELLQTKAVIPDATEIEENSRARSAKMR 292 Query: 313 AGMRT 317 G++ Sbjct: 293 VGIKI 297 >gi|323527438|ref|YP_004229591.1| S-adenosyl-methyltransferase MraW [Burkholderia sp. CCGE1001] gi|323384440|gb|ADX56531.1| S-adenosyl-methyltransferase MraW [Burkholderia sp. CCGE1001] Length = 313 Score = 339 bits (869), Expect = 5e-91, Method: Composition-based stats. Identities = 114/312 (36%), Positives = 172/312 (55%), Gaps = 19/312 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H VLLE+ + L V +D TFG GG+SR + +IA D+DP A++ Q+ Sbjct: 7 HRTVLLEEAVEALVTRADGVYVDGTFGRGGHSRLVLEKLSEAGRLIAFDKDPLAIATAQQ 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +F + +F+ L+ + +G V GV+ DLGVSS Q+D +RGFSF+ GPL Sbjct: 67 IA---DPRFGIVHESFASLRTAIAARGIERVSGVLLDLGVSSPQVDDPERGFSFRADGPL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS----APFQTT 188 DMRM + G SA+D + +A V++LT ++ GEE+ A +IA A+V RR P +T Sbjct: 124 DMRMDPTRGESAADWLARATVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLVST 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ ++ V + PATR+FQA+RI +N E+ EL L +A L+ GG L+V+ Sbjct: 184 GELAQIVANVVKT-REKGKDPATRTFQAIRIHINQELAELQVVLEAALALLEQGGRLVVI 242 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDVAFNRRS 306 SFHSLEDR+VK+F + + R + + + I + V + +VA N R+ Sbjct: 243 SFHSLEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPPLKIIGR--VFASDAEVAANPRA 300 Query: 307 RSAKLRAGMRTV 318 RSA +R R Sbjct: 301 RSAVMRVAERIA 312 >gi|302528477|ref|ZP_07280819.1| MraW methylase [Streptomyces sp. AA4] gi|302437372|gb|EFL09188.1| MraW methylase [Streptomyces sp. AA4] Length = 318 Score = 339 bits (869), Expect = 5e-91, Method: Composition-based stats. Identities = 114/315 (36%), Positives = 169/315 (53%), Gaps = 10/315 (3%) Query: 16 TIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFA 70 +HVPVLL++++ L PA V++DAT G GG+S + + I LDRDP A Sbjct: 3 DSAEHVPVLLDRIVELFAPALADRDAVLVDATVGLGGHSDALLSAFPRLRLIGLDRDPAA 62 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSF 127 + E + + ++ L + L + V G VDG++FDLGVSSMQ+D +RGF++ Sbjct: 63 LERSAERLARHGDRVDLVHTVYDGLPEAVSGLGLSRVDGILFDLGVSSMQLDRAERGFAY 122 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + PLDMRM + G +A+DV+N +L RIL GEE+ A RI A+V R+ PF Sbjct: 123 SQDAPLDMRMDPTTGFTAADVLNTYAPGELIRILRDYGEERFAQRIVRAVVAEREKEPFT 182 Query: 187 TTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 + L L+ V + + HPA R+FQALRI VN E+E L + + +A L G + Sbjct: 183 RSGRLVELLYSAVPAASRRTGGHPAKRTFQALRIEVNGELEVLRRAMPAALGTLAMNGRI 242 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 +V S+ SLEDRLVK+ A R+ + H + +T+ + ++ N R Sbjct: 243 VVESYQSLEDRLVKQALAERAKSRTPEGLPVELPGHGPELKLLTRGAEKAGESEIEHNPR 302 Query: 306 SRSAKLRAGMRTVER 320 + S +LRA R E Sbjct: 303 AASVRLRAAQRIGEP 317 >gi|85058419|ref|YP_454121.1| S-adenosyl-methyltransferase MraW [Sodalis glossinidius str. 'morsitans'] gi|123520087|sp|Q2NVV9|RSMH_SODGM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|84778939|dbj|BAE73716.1| conserved hypothetical protein [Sodalis glossinidius str. 'morsitans'] Length = 315 Score = 339 bits (869), Expect = 5e-91, Method: Composition-based stats. Identities = 119/312 (38%), Positives = 174/312 (55%), Gaps = 17/312 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H VLL++ + LN P V LD TFG GG+SR + A+DRDP A+ + Sbjct: 7 HTTVLLDEAVKGLNLRPDSVYLDGTFGRGGHSRLILSKLGAQGRLFAIDRDPAAIEAAR- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +F++ FS + +Y+ + VDG++ DLGVSS Q+D +RGFSF + GP Sbjct: 66 --AIEDARFAIIHGPFSAMAEYMAQRDLLGKVDGILLDLGVSSPQLDDPERGFSFMRDGP 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G SA+ + QA+ +D+ +L GEE+ A RIA AIV + P T++L Sbjct: 124 LDMRMDTTRGQSAAQWLAQASAEDIAWVLKTFGEERFAKRIAQAIVAHNRQQPMTRTREL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++LI F ++ HPATRSFQA+RI++N+E+EE+ + L A L GG L V+SFH Sbjct: 184 AALIADASPF-RDKHKHPATRSFQAIRIYINSELEEIERALDGALTVLAPGGRLSVISFH 242 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV---FQSITKKV--VVPTQEDVAFNRRS 306 SLEDRLVK+F S + + A A Q + K + P+ +++ N R+ Sbjct: 243 SLEDRLVKQFIRQHSRGPQVPAGLPLTEAQIAAQYQDQRLLKAAGKMQPSAREISDNPRA 302 Query: 307 RSAKLRAGMRTV 318 RS+ LR + Sbjct: 303 RSSVLRFAEKLA 314 >gi|6685115|gb|AAF23786.1|AF213822_1 hypothetical protein [Zymomonas mobilis subsp. mobilis ZM4] Length = 333 Score = 339 bits (869), Expect = 5e-91, Method: Composition-based stats. Identities = 141/331 (42%), Positives = 199/331 (60%), Gaps = 11/331 (3%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSNVIALDRD 67 M+S + H+PVLL++VI L+P G + +D TFGAGGYSR+ K + VIA DRD Sbjct: 1 MTS--DSFLAPHIPVLLDEVIEALSPVEGGIYIDGTFGAGGYSRAILEKADTQVIAFDRD 58 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQL---QDYVPDKGVDGVVFDLGVSSMQIDCGDRG 124 P A+ G + YK + L FS + D + K VDG+VFD+GVSSMQID +RG Sbjct: 59 PDAIREGASLVEKYKGRLRLVNDCFSNIGHHLDALDIKTVDGMVFDIGVSSMQIDRPERG 118 Query: 125 FSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 FS Q GPLDMRM+ +G+SA +++N A KD+ +L + GEE+Q+ R+A AIV R +A Sbjct: 119 FSIQADGPLDMRMAQAGLSAEELLNNAQEKDIADVLYLYGEERQSRRVATAIV--RGTAF 176 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 + L+ +I++++ + ++ PA FQA+RI +N E++EL GL++AE+ LK G Sbjct: 177 KRRLFRLAKVIRQSLGYRPFDKKDPAAHCFQAIRIHLNRELDELKDGLQTAERFLKTKGC 236 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 L VV+FHSLEDR+VK F +G+ RH VF S + V + ++A N Sbjct: 237 LAVVTFHSLEDRIVKHFMREHAGQTGQVSRHQPVIPQQNPVFFSKPARPVRAGETELARN 296 Query: 304 RRSRSAKLRAGMRTVERSIEDDSF--VHLPR 332 R+RSA LRA RT ED S H+PR Sbjct: 297 PRARSATLRAVYRTETPFSEDISRPDTHIPR 327 >gi|264680254|ref|YP_003280164.1| S-adenosyl-methyltransferase MraW [Comamonas testosteroni CNB-2] gi|262210770|gb|ACY34868.1| S-adenosyl-methyltransferase MraW [Comamonas testosteroni CNB-2] Length = 309 Score = 339 bits (869), Expect = 6e-91, Method: Composition-based stats. Identities = 124/311 (39%), Positives = 178/311 (57%), Gaps = 17/311 (5%) Query: 20 HVPVLLEKVIALL----NPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72 H+ VLL++ + L P +DATFG GG+SR + +IA D+DP A++ Sbjct: 7 HITVLLDEAVDALLGGAAKPPAGQWVDATFGRGGHSRLILQRLGPDGRLIAFDKDPDAIA 66 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E R +FS+ F L + +P+ V GV+ DLGVSS QID DRGFSF+ GP Sbjct: 67 ---EAARITDARFSIRHEGFRHLGE-LPEGSVQGVLMDLGVSSPQIDNPDRGFSFRFDGP 122 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ-SAPFQTTQD 190 LDMRM + G S ++ + A V+ + ++ GEE+ A IA AIV RR+ P +TT + Sbjct: 123 LDMRMDTTRGQSVAEWLEDAEVQQIAEVIRDYGEERFAGPIAKAIVARRESQGPLRTTAE 182 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ L+ V + +PATR+FQALRIF+N E++EL Q L ++ + L GG L V+SF Sbjct: 183 LAQLVAGAVKT-REAGQNPATRTFQALRIFINAELQELEQALEASLRVLAPGGRLAVISF 241 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDR+VK+F A S +V R A P +++ + + P+ +V N RSRSA Sbjct: 242 HSLEDRIVKQFIAKHSKEVYDRRAPFAPPA-PMRLKALER--IKPSAAEVDANPRSRSAV 298 Query: 311 LRAGMRTVERS 321 +R RT + Sbjct: 299 MRVAERTEVPA 309 >gi|42559426|sp|P60397|RSMH_ONYPE RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 304 Score = 338 bits (868), Expect = 6e-91, Method: Composition-based stats. Identities = 106/311 (34%), Positives = 166/311 (53%), Gaps = 14/311 (4%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70 ++ T +H+ VL ++ I L P + +DAT G G++ + + + D+D A Sbjct: 1 MNKTHFNHISVLKQEAIDFLKIKPEGIYVDATLGQCGHTIEIANLLQQGFLYSFDQDVEA 60 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSF 127 + ++ + + + + FS L+ + + V DG++FDLG+SS QID RGFS+ Sbjct: 61 CTNAKKILPPHLP-IEIIHSNFSHLKTQLAQRNVFQLDGILFDLGLSSCQIDNPQRGFSY 119 Query: 128 QKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + PLDMRM+ I+A ++N + L I + GE K A+ +A I+K+R P Sbjct: 120 LHNTPLDMRMNVNQTITAQYILNNYSFAQLKNIFKVYGEVKNAALVASEIIKQR---PLC 176 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T+ DL ++ T F + H A + FQALRI VN E+E L Q L + LK +++ Sbjct: 177 TSYDLVAI---TDRFCNRQKGHSAKKIFQALRIEVNQELESLKQALEQSLDLLKPNAMIV 233 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+SFHSLEDR+VK FF S V+ + I ITKK +P++E++ N RS Sbjct: 234 VISFHSLEDRIVKHFFKKNSTFVLPKKMPITI-MPQTPLSIITKKAFLPSEEEMQNNSRS 292 Query: 307 RSAKLRAGMRT 317 SAKLR ++ Sbjct: 293 ISAKLRVAVKN 303 >gi|299533126|ref|ZP_07046511.1| S-adenosyl-methyltransferase MraW [Comamonas testosteroni S44] gi|298718903|gb|EFI59875.1| S-adenosyl-methyltransferase MraW [Comamonas testosteroni S44] Length = 309 Score = 338 bits (868), Expect = 6e-91, Method: Composition-based stats. Identities = 122/311 (39%), Positives = 178/311 (57%), Gaps = 17/311 (5%) Query: 20 HVPVLLEKVIALL----NPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72 H+ VLL++ + L P +DATFG GG+SR + +IA D+DP A++ Sbjct: 7 HITVLLDEAVDALLGGAAKPPAGQWVDATFGRGGHSRLILQRLGPDGRLIAFDKDPDAIA 66 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E R +FS+ F L + +P+ V GV+ DLGVSS QID DRGFSF+ GP Sbjct: 67 ---EAARITDARFSIRHEGFRHLGE-LPEGSVQGVLMDLGVSSPQIDNPDRGFSFRFDGP 122 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ-SAPFQTTQD 190 LDMRM + G S ++ + A V+ + ++ GEE+ A IA AIV RR+ P +TT + Sbjct: 123 LDMRMDTTRGQSVAEWLEDAEVQQIAEVIRDYGEERFAGPIAKAIVARRESQGPLRTTAE 182 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ L+ V + +PATR+FQALRIF+N E++EL Q L ++ + L GG L V+SF Sbjct: 183 LAQLVAGAVKT-REAGQNPATRTFQALRIFINAELQELEQALEASLRVLAPGGRLAVISF 241 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDR+VK+F A S ++ R + P +++ + + P+ +V N RSRSA Sbjct: 242 HSLEDRIVKQFIAKHSKEIY-DRRAPFAPPTPMRLKALER--IKPSAAEVDANPRSRSAV 298 Query: 311 LRAGMRTVERS 321 +R RT + Sbjct: 299 MRVAERTEVPA 309 >gi|297268188|ref|XP_001088477.2| PREDICTED: putative S-adenosyl-L-methionine-dependent methyltransferase METT5D1-like isoform 1 [Macaca mulatta] Length = 407 Score = 338 bits (868), Expect = 6e-91, Method: Composition-based stats. Identities = 130/335 (38%), Positives = 185/335 (55%), Gaps = 38/335 (11%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H+PV++++V+ L+P G++ LD TFG+GG++++ + S+ + ALDRDP A + + Sbjct: 72 HIPVMVDEVVHCLSPQKGQIFLDMTFGSGGHTKAILQKESDIVLYALDRDPTAYALAEHL 131 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 Y +Q FSQ + + GV DGV+ DLG SSMQ+D +RGFS +K GP Sbjct: 132 SELYPKQIRAVLGQFSQAEALLTKAGVQPGTFDGVLMDLGCSSMQLDTPERGFSLRKDGP 191 Query: 133 LDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM +A+DVVN + L IL GEEK A +IA AIV+ R P T Sbjct: 192 LDMRMDGGRYPDMPTAADVVNALDQPALASILRTYGEEKHARKIASAIVQARSIYPITRT 251 Query: 189 QDLSSLIQKTVYFSK--------NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 Q L+S++ S H AT++FQALRIFVNNE+ EL GL++A+K L+ Sbjct: 252 QQLASIVAGAFPPSAIYARKDLLQRSTHIATKTFQALRIFVNNELNELYTGLKTAQKFLR 311 Query: 241 AGGLLIVVSFHSLEDRLVKKFF-------------------ASRSGKVMAVRHMIPSNAH 281 GG L+ +SFHSLEDR++K+F S+ G + Sbjct: 312 PGGRLVALSFHSLEDRIIKRFLLGISMTERFNLSVRQQVMKTSQLGSGHENTEEVSMRRA 371 Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 P +++ I KKV+ P +DV N R RSAKLRA ++ Sbjct: 372 PLMWELIHKKVLSPQDQDVQDNPRGRSAKLRAAVK 406 >gi|254382600|ref|ZP_04997958.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Streptomyces sp. Mg1] gi|194341503|gb|EDX22469.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Streptomyces sp. Mg1] Length = 310 Score = 338 bits (868), Expect = 7e-91, Method: Composition-based stats. Identities = 113/306 (36%), Positives = 174/306 (56%), Gaps = 10/306 (3%) Query: 24 LLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETM 78 +L++ + LL P PG V++D T G GG+S + ++I LDRD A+ E + Sbjct: 2 MLQRCLDLLAPALQKPGAVVVDCTLGLGGHSEALLTRFPEAHLIGLDRDKEALRLSGERL 61 Query: 79 RDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + + +L A ++ L + + V G++FDLGVSSMQ+D DRGF++ + PLDM Sbjct: 62 APFGGRVTLVHAIYADLAEVLDGLRIPAVQGILFDLGVSSMQLDEADRGFAYAQDAPLDM 121 Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM + GISA++V+N +L RIL GEEKQA RI A+V+ R+ PF + L L Sbjct: 122 RMDQTTGISAAEVLNTYAPGELVRILRQYGEEKQAKRIVSAVVREREKEPFSNSARLVEL 181 Query: 195 IQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 I+ + +K +PA R+FQALRI VN E+ L + + +A + GG + V+S+HSL Sbjct: 182 IRDALPQAAKRTGGNPAKRTFQALRIEVNGELSGLERAIPAAVDRIAVGGRIAVLSYHSL 241 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 EDRLVK+ FA+ + + + + +T+ +PT+E++A NRR+ A+ R Sbjct: 242 EDRLVKQVFAAGATSTAPPGLPVVPEKYQPKLKLLTRGAELPTEEEIAENRRAAPARFRG 301 Query: 314 GMRTVE 319 R E Sbjct: 302 VERIRE 307 >gi|194246838|ref|YP_002004477.1| S-adenosyl-methyltransferase [Candidatus Phytoplasma mali] gi|262824840|sp|B3R0Q2|RSMH_PHYMT RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|193807195|emb|CAP18636.1| S-adenosyl-methyltransferase [Candidatus Phytoplasma mali] Length = 300 Score = 338 bits (868), Expect = 7e-91, Method: Composition-based stats. Identities = 118/305 (38%), Positives = 174/305 (57%), Gaps = 14/305 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76 +H+PVL ++V+ LN + +DAT G GG+S + + A D+D FA+ ++ Sbjct: 4 NHIPVLPKEVLKYLNVKSSGIYVDATLGGGGHSELILEKLKKGFLYAFDQDIFAIKQSKK 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + L + F L+ + +GV DG++FDLG+SS QID +RGFS+ + L Sbjct: 64 LFAN-NHKIELIHSNFFFLKQELNKRGVFFVDGIIFDLGLSSFQIDDKERGFSYLSNEFL 122 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM ++A ++N + + L I G+EK +S IA I+K+R P TT +L Sbjct: 123 DMRMDREQKLTAHYIINNYSFEKLRNIFFNFGQEKNSSLIAAEIIKKR---PLNTTFELV 179 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 + F+ N + H + + FQALRI VN E+E L + L LK G ++V+SFHS Sbjct: 180 EI---ADKFNYNRKGHSSKKIFQALRIEVNKELELLQKTLHQCLSLLKEGSSIVVISFHS 236 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDRLVK FF + S + + I SN V + ITKKVV P+ E++AFN RSRSAKLR Sbjct: 237 LEDRLVKNFFRANSIINLPTKLPIVSNFK-TVLKIITKKVVKPSLEEIAFNHRSRSAKLR 295 Query: 313 AGMRT 317 A ++ Sbjct: 296 AAVKN 300 >gi|325294232|ref|YP_004280746.1| ribosomal RNA small subunit methyltransferase H [Desulfurobacterium thermolithotrophum DSM 11699] gi|325064680|gb|ADY72687.1| Ribosomal RNA small subunit methyltransferase H [Desulfurobacterium thermolithotrophum DSM 11699] Length = 296 Score = 338 bits (868), Expect = 7e-91, Method: Composition-based stats. Identities = 118/308 (38%), Positives = 181/308 (58%), Gaps = 26/308 (8%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQET 77 H PVLL++ I LL ++ +DAT G GG++ + + VIA+DRD A+ + Sbjct: 7 HPPVLLKESIELLKAKDARIFVDATLGGGGHTEAILEANPENRVIAIDRDEEAIERAMKR 66 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + + ++ S++ A FSQ+ + + +G V+GV+FDLGVS + G+RGF+ + PLD Sbjct: 67 LERFGDRISIYHANFSQIGEVLEAEGIKEVNGVLFDLGVSHFHL-RGNRGFTVWEEQPLD 125 Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM ++A DVVN+ + K+L I+ GEEK A +IA IV+RR+ P +TT +L+ Sbjct: 126 MRMDRRQKLTARDVVNKLSEKELADIIFKYGEEKFARKIAREIVRRRKIKPIETTLELAK 185 Query: 194 LIQKTVYFS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++++ + + HPA ++FQA+RIFVN E +E+ +G+ A + G ++V++FH Sbjct: 186 IVEEVIPKKLWAGRKKHPAIKTFQAIRIFVNREFQEIEEGIPEAANHVACSGRIVVITFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDRLVK F + G F+ ITKK V PT+E++ N SRSAKL Sbjct: 246 SLEDRLVKNIFRNLEG-----------------FKVITKKPVEPTEEEIKKNPASRSAKL 288 Query: 312 RAGMRTVE 319 RA R E Sbjct: 289 RAIERVCE 296 >gi|225011606|ref|ZP_03702044.1| S-adenosyl-methyltransferase MraW [Flavobacteria bacterium MS024-2A] gi|225004109|gb|EEG42081.1| S-adenosyl-methyltransferase MraW [Flavobacteria bacterium MS024-2A] Length = 299 Score = 338 bits (868), Expect = 7e-91, Method: Composition-based stats. Identities = 107/308 (34%), Positives = 157/308 (50%), Gaps = 17/308 (5%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSC 73 H PVLL+ + L+ P + +DATFG GG+SR ++ D+D A++ Sbjct: 2 TQYHNPVLLQASLEGLHIRPNGIYVDATFGGGGHSRVILDRLGKEGRLLGFDQDVDALAN 61 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 E +F A FS L Y+ VDG++ D GVSS Q D +RGFS + Sbjct: 62 NIE-----DSRFDFVAANFSHLTQYLKYHKIDKVDGILADFGVSSHQFDTQERGFSIRTD 116 Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM+ S + A V+N + L + GE K + I+ IV+ R+ TT Sbjct: 117 ARLDMRMNQSQDLDAHKVINTYSEDKLRMLFFAYGELKNSKTISRTIVEAREECEIITTM 176 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 DL L++ V N+I + FQALRI VN+E+E L L A + L GG L+ +S Sbjct: 177 DLIELVKPLVPKRIENKI--LAQLFQALRIEVNDELEALKSFLIQANEVLVQGGRLVCIS 234 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 +HSLEDRLVK++F + S + + P + I K+++P+ ++V N R+RSA Sbjct: 235 YHSLEDRLVKRYFQTGSFDGELEKDFYGNPIKP--LKKI-GKLIIPSSDEVKENGRARSA 291 Query: 310 KLRAGMRT 317 KLR + Sbjct: 292 KLRIAEKI 299 >gi|118602334|ref|YP_903549.1| S-adenosyl-methyltransferase MraW [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|262826332|sp|A1AVX1|RSMH_RUTMC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|118567273|gb|ABL02078.1| S-adenosyl-methyltransferase MraW [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 307 Score = 338 bits (867), Expect = 7e-91, Method: Composition-based stats. Identities = 104/310 (33%), Positives = 171/310 (55%), Gaps = 16/310 (5%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCG 74 H V+L + I LN + +DATFG GG+++ +IA D+D A+ Sbjct: 4 NHHQSVMLNESIGALNIKTDGIYIDATFGRGGHAQGILNKLGEQGKLIAFDQDINAIEYA 63 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + D + +L + FS + + + +G +DG++ DLGVSS Q+D RGFSF+ Sbjct: 64 HKNFTD--SRLTLIYSAFSNMLNIITQQGLMSKIDGILMDLGVSSPQLDNAQRGFSFKAD 121 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 GPLDMRM+ + G+SA+ +N AN +++ ++ G+EK++ IA I K +Q +TT Sbjct: 122 GPLDMRMNQTTGMSATQWLNLANEEEIANVIYQFGDEKRSRHIATRIKKYQQKHTLETTL 181 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ ++ K V KN HPATR+FQA+RIF+N E+++L L ++ L+ G L ++S Sbjct: 182 ALAGIVSKVVKRQKN--KHPATRTFQAIRIFINQELKQLEDVLEQSKDILRKDGRLSIIS 239 Query: 250 FHSLEDRLVKKFFASRS--GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 FHS+EDR+VK F S + +I +++ K ++ +++ N+R+R Sbjct: 240 FHSIEDRIVKHFIQKNSRQKNLPKGLPIIDYKIEKTCLKNLGK--YFASKAEISRNKRAR 297 Query: 308 SAKLRAGMRT 317 SA LR + Sbjct: 298 SAILRVASKN 307 >gi|170057826|ref|XP_001864654.1| s-adenosyl-methyl transferase mraw [Culex quinquefasciatus] gi|167877164|gb|EDS40547.1| s-adenosyl-methyl transferase mraw [Culex quinquefasciatus] Length = 1479 Score = 338 bits (867), Expect = 8e-91, Method: Composition-based stats. Identities = 133/336 (39%), Positives = 181/336 (53%), Gaps = 30/336 (8%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70 + HVPV+ + I L P ++ +D TFGAGG+++ K N +I LDRDP A Sbjct: 1144 MSTEAVRHVPVMAAEAIKFLKPQDSELFIDMTFGAGGHTKQILKAAPNAKIITLDRDPVA 1203 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGF 125 QE + Y Q FS+L + + V DG++FD G SSMQ D G+RGF Sbjct: 1204 HELAQEMAKRYPGQIYPVLGRFSELPAKLKELNVNQRSIDGMIFDFGCSSMQFDEGERGF 1263 Query: 126 SFQKSGPLDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 S K+GPLDMRM SA+DV+ + + DL RIL + GEEK A RIA AIV+ R Sbjct: 1264 SISKNGPLDMRMDKDRCPDAPSAADVLARIDEMDLARILKVYGEEKFAKRIARAIVEARH 1323 Query: 182 S-APFQTTQDLSSLIQKTVYFSKN-----NRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 S +TT++L+ L+Q HPAT++FQALRIFVNNE+ E+ G+ A Sbjct: 1324 SIKKIETTKELAELVQTCCASEFRLDKLQRPSHPATKTFQALRIFVNNELNEINYGMILA 1383 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-------------P 282 + LK GG +I ++FHSLED +VK+ MA + + +H Sbjct: 1384 QHYLKIGGKMITITFHSLEDTIVKRHVMGNVANDMANKLPLKYCSHTICHDQTVMDAALK 1443 Query: 283 AVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318 + +TK VVVP+ +V N RSRSAKLRA +R Sbjct: 1444 PNWHQMTKHVVVPSDAEVEENPRSRSAKLRAVVRVE 1479 >gi|126332528|ref|XP_001380257.1| PREDICTED: similar to methyltransferase 5 domain containing 1, [Monodelphis domestica] Length = 442 Score = 338 bits (867), Expect = 8e-91, Method: Composition-based stats. Identities = 136/353 (38%), Positives = 193/353 (54%), Gaps = 38/353 (10%) Query: 2 ESKSCKTMSSAIHHTIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN 60 + + + S H T+ H+PV++ +VI L P G+ ILD TFG+GG+SR+ + + Sbjct: 89 KGQEIHSSQSENHETMKKLHIPVMVNEVINCLAPRQGQNILDMTFGSGGHSRAILQKELD 148 Query: 61 --VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGV 113 + LDRDP A + Q+ Y +Q + FSQ + + GV DGV+ DLG Sbjct: 149 VTLYVLDRDPTAYAIAQQLSELYPKQIRALLSQFSQAEAMLMKAGVQPGTVDGVLLDLGC 208 Query: 114 SSMQIDCGDRGFSFQKSGPLDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQA 169 SSMQ+D +RGFSF+K GPLDMRM +A+DVVN + + L IL GEEK A Sbjct: 209 SSMQLDTPERGFSFRKDGPLDMRMDGGRYPDMHTAADVVNALDQQALALILRTYGEEKYA 268 Query: 170 SRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSK--------NNRIHPATRSFQALRIFV 221 +IA AIV+ R P TQ L+S++ + H AT++FQALRIFV Sbjct: 269 KKIASAIVQARSIYPITRTQQLASIVAGAFPTAALYERKDLLQRSTHIATKTFQALRIFV 328 Query: 222 NNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKF------------------FA 263 NNE+ EL GL++A+K L+ GG L+ +SFHSLEDR+VK+F Sbjct: 329 NNELNELYVGLKTAQKFLRPGGRLVALSFHSLEDRIVKRFLHGIDVTEKLSPKKRQKIIQ 388 Query: 264 SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 ++S + ++ P ++ I KKVV P ++V N R RSAKLRA ++ Sbjct: 389 AQSLCLNQENEEFFRSSSPLEWEMIYKKVVTPESQEVQDNPRGRSAKLRAAIK 441 >gi|331005086|ref|ZP_08328490.1| S-adenosyl-methyltransferase MraW [gamma proteobacterium IMCC1989] gi|330421141|gb|EGG95403.1| S-adenosyl-methyltransferase MraW [gamma proteobacterium IMCC1989] Length = 314 Score = 338 bits (867), Expect = 8e-91, Method: Composition-based stats. Identities = 115/318 (36%), Positives = 174/318 (54%), Gaps = 12/318 (3%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALD 65 MS ++ H VLL + + L +D TFG GG+SR S ++A+D Sbjct: 1 MSQSLEQLS--HQSVLLHESVDALITDVNGFYVDGTFGRGGHSREVLLRLSEDAQLMAVD 58 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCG 121 +D A++ + D K +FS+ +FSQL ++ + V+G++ DLGVSS Q+D Sbjct: 59 KDEQAIAEADKQFSDEK-RFSIRHGSFSQLNQWLVEIEKLGKVNGILLDLGVSSPQLDEA 117 Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 RGFSF + GPLDMRM+ + G +A++ +N A+ +D+ R+L GEE+ + RIA AIV R Sbjct: 118 HRGFSFMQDGPLDMRMNRTKGETAAEWINSASQEDIARVLKEYGEERFSKRIARAIVDHR 177 Query: 181 QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 Q PF TT +LS ++ + + + HPATR+FQA+RI +N+E+ +L L A AL Sbjct: 178 QEQPFATTHELSKVVTEANPAWEKGK-HPATRAFQAIRIHINDELSDLDVILEQALAALA 236 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300 GG L+V+SFHSLEDR VK+F + + + KV ++ Sbjct: 237 VGGRLVVISFHSLEDRRVKRFIRQQVQGDRLPMGVPVRDEQLNKRLRSLGKVTKAGASEL 296 Query: 301 AFNRRSRSAKLRAGMRTV 318 A N R+RSA +R + Sbjct: 297 AHNPRARSAVMRVAEKIA 314 >gi|167838012|ref|ZP_02464871.1| S-adenosyl-methyltransferase MraW [Burkholderia thailandensis MSMB43] Length = 313 Score = 338 bits (867), Expect = 8e-91, Method: Composition-based stats. Identities = 111/312 (35%), Positives = 174/312 (55%), Gaps = 19/312 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H VLL++ + L P V +D TFG GG+SR+ +IA D+DP A+ + Sbjct: 7 HRTVLLDEAVDALVTRPDGVYVDGTFGRGGHSRAVLARLSEAGRLIAFDKDPRAIETAKG 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +F + +F+ ++ + +GV GV+ DLGVSS Q+D RGFSF+ +GPL Sbjct: 67 IA---DARFEIVHDSFAAMKGALDARGVARVSGVLLDLGVSSPQVDDPARGFSFRANGPL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS----APFQTT 188 DMRM + G SA++ + +A+V++LT ++ GEE+ A +IA AIV RR P +T Sbjct: 124 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRLGPLDST 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ ++ V + PATR+FQA+RI VN E+ +L L +A +L+ GG L+V+ Sbjct: 184 GELAQIVGHVVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLEAALSSLEQGGRLVVI 242 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDVAFNRRS 306 SFHSLEDR+VK+F + + R + + + + + + P+ +VA N R+ Sbjct: 243 SFHSLEDRIVKRFLQTHASAPAVDRRLPIRAVDLPSPPLKLLGR--MFPSDAEVAANPRA 300 Query: 307 RSAKLRAGMRTV 318 RSA +R R Sbjct: 301 RSAVMRIAERIA 312 >gi|86132600|ref|ZP_01051193.1| S-adenosyl-methyltransferase [Dokdonia donghaensis MED134] gi|85816842|gb|EAQ38027.1| S-adenosyl-methyltransferase [Dokdonia donghaensis MED134] Length = 298 Score = 338 bits (867), Expect = 8e-91, Method: Composition-based stats. Identities = 102/305 (33%), Positives = 166/305 (54%), Gaps = 17/305 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H PVLL++ + L+ P V +D TFG GG+SR + D+DP A + Sbjct: 4 HNPVLLKETVDGLDIKPDGVYVDVTFGGGGHSREILSRLGENGKLYGFDQDPDAAQNVPD 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +F L F ++ ++ G VDG++ D GVSS Q D +RGFS + L Sbjct: 64 -----DSRFVLIPENFRFIKRFLRFHGHKKVDGILGDFGVSSHQFDVAERGFSTRFESDL 118 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +SA +VVN +DL ++ GE + A ++A AIV R +AP +T++ L Sbjct: 119 DMRMNQKDDLSAYNVVNDYAEEDLRQVFWQYGELRNAPKLASAIVVARGNAPIKTSEQLK 178 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++ + + ++I + +QA+RI VN EIE L + L E+ L+ GG + ++S+HS Sbjct: 179 KVLAAFLPKHREHKI--LAQIYQAIRIEVNQEIEVLKEFLLQTEQLLEPGGRISLISYHS 236 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDRLVK++ + + + M + P F+ + + ++VP++E++ N R+RSAKLR Sbjct: 237 LEDRLVKRYIRNGLFEGEPEKDMYGNFEVP--FKKVGR-LIVPSKEEIKSNNRARSAKLR 293 Query: 313 AGMRT 317 + Sbjct: 294 IAAKV 298 >gi|107021630|ref|YP_619957.1| S-adenosyl-methyltransferase MraW [Burkholderia cenocepacia AU 1054] gi|123245314|sp|Q1BZH1|RSMH_BURCA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|105891819|gb|ABF74984.1| methyltransferase [Burkholderia cenocepacia AU 1054] Length = 313 Score = 338 bits (867), Expect = 9e-91, Method: Composition-based stats. Identities = 115/311 (36%), Positives = 175/311 (56%), Gaps = 19/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H VLL++ + L P V +D TFG GG+SR+ +IA D+DP A+ Q Sbjct: 7 HRTVLLDEAVESLVTRPDGVCVDGTFGRGGHSRAVLARLASAGRLIAFDKDPRAIETAQ- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +FS+ +F+ ++D + +GV GV+ DLGVSS Q+D RGFSF+ GPL Sbjct: 66 --GIEDARFSIVHDSFASMRDALAARGVEKVSGVLLDLGVSSPQVDDPARGFSFRADGPL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS----APFQTT 188 DMRM + G SA++ + +A+V++LT ++ GEE+ A +IA A+V RR P TT Sbjct: 124 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDTT 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ ++ V + PATR+FQA+RI VN E+ +L L +A L+ GG L+V+ Sbjct: 184 GELAQIVGHVVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVI 242 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDVAFNRRS 306 SFHSLEDR+VK+F + + R + + + I++ P++ +VA N R+ Sbjct: 243 SFHSLEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPPLKIISR--QFPSEAEVAANPRA 300 Query: 307 RSAKLRAGMRT 317 RSA +R R Sbjct: 301 RSAVMRIAERV 311 >gi|301770125|ref|XP_002920478.1| PREDICTED: probable S-adenosyl-L-methionine-dependent methyltransferase METT5D1-like [Ailuropoda melanoleuca] gi|281337489|gb|EFB13073.1| hypothetical protein PANDA_009216 [Ailuropoda melanoleuca] Length = 407 Score = 338 bits (867), Expect = 9e-91, Method: Composition-based stats. Identities = 132/335 (39%), Positives = 188/335 (56%), Gaps = 38/335 (11%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H+PV++++V+ L P G++ LD TFG+GG++R+ + S+ + ALDRDP A + ++ Sbjct: 72 HIPVMVDEVVRCLAPQKGQIFLDMTFGSGGHTRAILQKESDITLYALDRDPTAYAIAEQL 131 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 Y +Q FSQ + + GV DGV+ DLG SSMQ+D +RGFS +K GP Sbjct: 132 SELYPKQIRAMLGQFSQAEALLMKAGVQPGTLDGVLLDLGCSSMQLDAPERGFSLRKDGP 191 Query: 133 LDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM +A+DVVN + + L IL GEEK A +IA AIV+ R P T Sbjct: 192 LDMRMDGGRYPDMPTAADVVNALDQQALASILRTYGEEKHAKKIASAIVQARSLYPISRT 251 Query: 189 QDLSSLIQKTVY----FSKN----NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 Q L+S++ F++ H AT++FQA RIFVNNE+ EL GL++A+K L+ Sbjct: 252 QQLASIVAGAFPPSAVFARKDLLQRSTHIATKTFQAFRIFVNNELNELYTGLKTAQKFLR 311 Query: 241 AGGLLIVVSFHSLEDRLVKKFF-------------------ASRSGKVMAVRHMIPSNAH 281 GG L+ +SFHSLEDR+VK+F AS+ G + Sbjct: 312 PGGRLVALSFHSLEDRIVKRFLLGISMTERFNLSARQKVIQASQLGSGHENKEGGSIGRA 371 Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 P +++ I KKV+ P DV N R+RSAKLRA ++ Sbjct: 372 PLMWELIHKKVLTPEDRDVQDNPRARSAKLRAAIK 406 >gi|239931801|ref|ZP_04688754.1| S-adenosylmethionine-dependent methyltransferase [Streptomyces ghanaensis ATCC 14672] Length = 309 Score = 338 bits (867), Expect = 9e-91, Method: Composition-based stats. Identities = 120/306 (39%), Positives = 179/306 (58%), Gaps = 10/306 (3%) Query: 24 LLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETM 78 +L++ + LL P PG V++D T G GG+S + + ++ALDRD A+ E + Sbjct: 1 MLQRCLDLLAPALERPGAVVVDCTLGLGGHSEALLRRFPEARLVALDRDKEALRLSGERL 60 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + E+ +L A + +L D + GV GV+FDLGVSSMQ+D DRGF++ + PLDM Sbjct: 61 APFGERATLVHAVYDELPDVLARLGVPRVQGVLFDLGVSSMQLDEADRGFAYAQDAPLDM 120 Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM + G+SA++V+N +L RIL GEEKQA RI AIV+ R+ PF + L L Sbjct: 121 RMDQTAGVSAAEVLNTYPPGELVRILRAYGEEKQAKRIVAAIVREREKEPFTRSARLVEL 180 Query: 195 IQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 I+ + +K +PA R+FQALRI VN E+ L + + +A KAL G + V+S+HSL Sbjct: 181 IRDALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVKALDVDGRIAVLSYHSL 240 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 EDRLVK+ FA+ + + + + +T+ +PT+E++A NRR+ A+LR Sbjct: 241 EDRLVKQVFAAGAATTAPPGLPVVPERYQPRLKLLTRGAELPTEEEIAENRRAAPARLRG 300 Query: 314 GMRTVE 319 R E Sbjct: 301 AQRIRE 306 >gi|309812627|ref|ZP_07706371.1| S-adenosyl-methyltransferase MraW [Dermacoccus sp. Ellin185] gi|308433322|gb|EFP57210.1| S-adenosyl-methyltransferase MraW [Dermacoccus sp. Ellin185] Length = 323 Score = 338 bits (867), Expect = 9e-91, Method: Composition-based stats. Identities = 116/309 (37%), Positives = 178/309 (57%), Gaps = 9/309 (2%) Query: 20 HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 HVPV+L +++ L P G + +DAT G GG++ + + I +DRD A+ Sbjct: 12 HVPVMLTEILDALAPSLERSGALYVDATLGMGGHTEAVLERFGEARAIGIDRDTEALRLA 71 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 E + + ++F A +++ D +P D ++FDLGVSS+Q+D DRGFS++ PLD Sbjct: 72 GERLARFGDRFEGVHAVNTEVADVLPRP-ADAMLFDLGVSSLQLDELDRGFSYRADAPLD 130 Query: 135 MRMSCS--GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 MRM + G +A+DV+N A+ +L RIL GEE+ A +IAHA+VK R+ P+ T+ L Sbjct: 131 MRMDQTSDGPTAADVLNTASQDELERILKTYGEERFARKIAHAVVKEREKQPWTTSGRLV 190 Query: 193 SLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +++ + S+ HPA R+FQALRI VN+E+ Q + SA +L GG L V+SFH Sbjct: 191 EMLRSVIPLASQRQSGHPAKRTFQALRIEVNDELRGWEQAVTSALDSLAVGGRLAVLSFH 250 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+ K+ FA+ S + H F +T+ VP+++++ N RS S +L Sbjct: 251 SLEDRITKRAFATASASTAPPGLPVELPQHRPEFALVTRGAAVPSEDELESNPRSASVRL 310 Query: 312 RAGMRTVER 320 R RT + Sbjct: 311 RVIERTRAK 319 >gi|71894357|ref|YP_278465.1| S-adenosyl-methyltransferase [Mycoplasma synoviae 53] gi|88909204|sp|Q4A667|RSMH_MYCS5 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|71851145|gb|AAZ43754.1| S-adenosyl-methyltransferase [Mycoplasma synoviae 53] Length = 301 Score = 338 bits (867), Expect = 9e-91, Method: Composition-based stats. Identities = 109/306 (35%), Positives = 169/306 (55%), Gaps = 15/306 (4%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQ 75 +H+PVLL +V+ L + +D T G GG+S+ K +IA D+D FA+ Sbjct: 3 NNHIPVLLNEVLDNLALKENGIYIDLTLGMGGHSKEILKRIPKGKLIAFDKDDFAIKNAS 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +T+ + F + ++ F ++ + + G VDG++ DLG+SS QID +RGFS+ K+ Sbjct: 63 KTLSEVANNFEIIKSDFKDFKEELSNLGIYKVDGILADLGISSPQIDNAERGFSYLKNSA 122 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S +SA DVVN V+ L IL GE K IA I++ R P TT +L Sbjct: 123 LDMRMDQSQKLSAYDVVNLYPVEKLEYILKTYGEVKNYKYIASKIIEAR---PINTTLEL 179 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++LI+ +PA FQA+RI VNNE++ + Q L S E LK L+++SFH Sbjct: 180 ANLIKSVTPQKLLKLKNPAKNVFQAIRIEVNNELDSIHQMLSSVEDLLKVNASLLIISFH 239 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLED++VK +F + + + I + A T++ + P+++++ N RS+SAKL Sbjct: 240 SLEDKIVKNYFQELTKPKLPSKMPIQEDKFFA-----TRR-IYPSKQELNLNSRSKSAKL 293 Query: 312 RAGMRT 317 R + Sbjct: 294 RILTKI 299 >gi|300774439|ref|ZP_07084302.1| S-adenosyl-methyltransferase MraW [Chryseobacterium gleum ATCC 35910] gi|300506254|gb|EFK37389.1| S-adenosyl-methyltransferase MraW [Chryseobacterium gleum ATCC 35910] Length = 297 Score = 338 bits (867), Expect = 9e-91, Method: Composition-based stats. Identities = 102/305 (33%), Positives = 160/305 (52%), Gaps = 17/305 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H PVLL++ + L P + +D TFG GG+SR + + D+D A+ + Sbjct: 3 HNPVLLKQSVDDLVTNPDGIYVDCTFGGGGHSREILSRLSDKGRLFSFDQDLDALKNTID 62 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +F+L F L++ + GV DG++ DLGVSS Q D DRGFS + + PL Sbjct: 63 -----DPRFTLVNQNFRFLENSLLMYGVSQVDGILADLGVSSHQFDEADRGFSTRSNAPL 117 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ + A V+N+ ++L + GE ++A ++A IV R++ +TT+DL Sbjct: 118 DMRMNVMQNLDAKRVINEYEEEELADLFYHYGELREARKLAREIVHHRKTKSIETTEDLK 177 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 L N + FQA+RI VN E+E L + L A LK G L+V+S+HS Sbjct: 178 KLFSYIPPHKVN---KFYAQLFQAIRIEVNQELEVLKEMLVQAYNVLKPEGRLVVISYHS 234 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDRLVK+F + + R + + F+ + K ++P +++ N R+RSAK+R Sbjct: 235 LEDRLVKRFLKNGMFEGEPERDI--YGNYKKAFELVKSKAIIPDDKEIEENSRARSAKMR 292 Query: 313 AGMRT 317 G++ Sbjct: 293 TGIKV 297 >gi|241668885|ref|ZP_04756463.1| S-adenosylmethionine-dependent methyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254877417|ref|ZP_05250127.1| S-adenosyl-methyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254843438|gb|EET21852.1| S-adenosyl-methyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 305 Score = 338 bits (867), Expect = 1e-90, Method: Composition-based stats. Identities = 118/309 (38%), Positives = 173/309 (55%), Gaps = 16/309 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76 H VLL++ IA LN P + +DATFG GG+S++ +IA D+D A+ Sbjct: 1 MHFSVLLQESIADLNINPEGIYIDATFGRGGHSKAILDKLTSGRLIAFDKDLDAIDYATH 60 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 ++ + F + A+F+ + DY VDG++ DLGVSS Q+D +RGFSF GP Sbjct: 61 NFQN--DNFEIVHASFTYIYDYCLQHNLLGEVDGIIMDLGVSSPQLDNANRGFSFTHDGP 118 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTTQD 190 LDMRM S G++AS + + +V +LT I + GEE+ A +IA I ++ TT Sbjct: 119 LDMRMDISKGLTASQALEELSVDELTYIFKVYGEERFAKKIALRIKDYIAENGSITTTHQ 178 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ LI+ T+ K + +PATR FQALRI+VN+E+++L L S +K GG + +SF Sbjct: 179 LAELIRATI--GKREKKNPATRCFQALRIYVNDELKDLEILLESILDVIKKGGRVAAISF 236 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH---MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 HSLEDR+VK+ F S M+P + + ITKK Q++++ N RSR Sbjct: 237 HSLEDRIVKQKFTSLINPKQETNRIAKMLPQDNSQVKMKWITKKA-KANQDELSQNVRSR 295 Query: 308 SAKLRAGMR 316 SA LR + Sbjct: 296 SAILRVVEK 304 >gi|119331204|ref|NP_001073250.1| probable methyltransferase-like protein 15 [Bos taurus] gi|160012244|sp|A0JN95|MET15_BOVIN RecName: Full=Probable methyltransferase-like protein 15; AltName: Full=Methyltransferase 5 domain-containing protein 1 gi|117306276|gb|AAI26576.1| Methyltransferase 5 domain containing 1 [Bos taurus] gi|296479746|gb|DAA21861.1| putative S-adenosyl-L-methionine-dependent methyltransferase METT5D1 [Bos taurus] Length = 407 Score = 338 bits (867), Expect = 1e-90, Method: Composition-based stats. Identities = 129/335 (38%), Positives = 185/335 (55%), Gaps = 38/335 (11%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H+PV++++V+ L P G+V LD TFG+GG++R+ + + + ALDRDP A + ++ Sbjct: 72 HIPVMVDEVVRCLAPQKGQVFLDMTFGSGGHTRAILQKEPDITLYALDRDPTAYAIAEQL 131 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 Y +Q FSQ + + GV DGV+ DLG SSMQ+D +RGFS +K GP Sbjct: 132 SELYPKQIRAILGQFSQAEALLMKAGVQPGTLDGVLLDLGCSSMQLDTPERGFSLRKDGP 191 Query: 133 LDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM +A+DVVN + + L IL GEEK A +IA AI++ R P T Sbjct: 192 LDMRMDGDRYPDMPTAADVVNALDQQALASILRAYGEEKHAKKIASAIIQARGLYPITRT 251 Query: 189 QDLSSLIQKTVYFSK--------NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 Q L+S++ S H AT++FQA RIFVNNE+ EL GL++A+K L+ Sbjct: 252 QQLASIVAGAFPPSALYARKDLLQRPTHIATKTFQAFRIFVNNELNELYTGLKTAQKFLR 311 Query: 241 AGGLLIVVSFHSLEDRLVKKFF-------------------ASRSGKVMAVRHMIPSNAH 281 GG L+ +SFHSLEDR++K+F S+ + + + Sbjct: 312 PGGHLVALSFHSLEDRIIKRFLLGISMTERFNLSARQKVIQKSQLDSDQENKEGVSTGKA 371 Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 P +++ I KKV+ P EDV N R RSAKLRA ++ Sbjct: 372 PLMWKLIHKKVLTPEDEDVQDNPRGRSAKLRAAIK 406 >gi|260462082|ref|ZP_05810326.1| S-adenosyl-methyltransferase MraW [Mesorhizobium opportunistum WSM2075] gi|259031942|gb|EEW33209.1| S-adenosyl-methyltransferase MraW [Mesorhizobium opportunistum WSM2075] Length = 338 Score = 337 bits (866), Expect = 1e-90, Method: Composition-based stats. Identities = 138/287 (48%), Positives = 190/287 (66%), Gaps = 3/287 (1%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77 H+PVLL +V+ L PA G +I+D TFGAGGY+++ G++V+A+DRDP A++ G++ Sbjct: 16 ARHIPVLLGEVLEALAPAEGDIIIDGTFGAGGYTKAILATGASVVAIDRDPDAIAAGRDL 75 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 + L QA FS L ++ VDGVV D+GVSSMQ+D +RGFSF+ GPLDMRM Sbjct: 76 EAQSGGRLRLVQAPFSTLDEHAE--SVDGVVLDIGVSSMQLDQAERGFSFRNDGPLDMRM 133 Query: 138 SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK 197 + +G+SA+DVVN DL RI G LGEE+ A RIA I RR+ PF+ T +L+ I+ Sbjct: 134 AQAGLSAADVVNSFKPGDLARIFGFLGEERHAGRIARMIEARREKRPFERTLELADAIET 193 Query: 198 TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRL 257 + + ++IHPATR FQALRIFVN+E+ ELA+ L +AE+ALK GG L+VV+FHSLEDR+ Sbjct: 194 HIGRAPKDKIHPATRVFQALRIFVNDELGELAKALFAAERALKPGGRLVVVTFHSLEDRI 253 Query: 258 VKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 VK+F A R+ RH+ + A A F+ V P ++A N Sbjct: 254 VKRFIADRADTASGSRHLPEAQARSATFRKDGGG-VTPGDAEIAANP 299 >gi|225850230|ref|YP_002730464.1| S-adenosyl-methyltransferase MraW [Persephonella marina EX-H1] gi|262824804|sp|C0QP68|RSMH_PERMH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|225646628|gb|ACO04814.1| S-adenosyl-methyltransferase MraW [Persephonella marina EX-H1] Length = 293 Score = 337 bits (866), Expect = 1e-90, Method: Composition-based stats. Identities = 116/306 (37%), Positives = 172/306 (56%), Gaps = 22/306 (7%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76 +H PVL +V++ G+ I+DAT G GG+S K +I +D+D +A+ +E Sbjct: 3 EHYPVLHREVLSFFKNIKGRYIVDATVGGGGHSFLLLKNLPETFLIGIDKDDYALEKAEE 62 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + +K +F L + +F + V V GV+FDLGVS+ Q+ +RGFSFQ+ PL Sbjct: 63 KLSPFKGRFRLIKGSFKDIDTIVHSMDIKYVSGVLFDLGVSTFQLKT-ERGFSFQREEPL 121 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM +A DVVN+ +L +I+ GEEK A RIA AIV+ R+ +TT++L+ Sbjct: 122 DMRMDRTQKKTAFDVVNRYTKIELEKIIKDYGEEKFARRIASAIVEARKKKRIETTKELA 181 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++ + RIHPAT++FQA+RI VNNE+EE+ +G+ L+ GG++ V+SFH Sbjct: 182 QIVYNVYPPPLRRGRIHPATKTFQAIRIEVNNELEEIKEGVNKGIDLLEKGGIIAVISFH 241 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+VK + R + +TKK + P E++ N SRSAKL Sbjct: 242 SLEDRIVKNIYRERK--------------RLKDIEILTKKPITPGTEEIRENPPSRSAKL 287 Query: 312 RAGMRT 317 R R Sbjct: 288 RVAKRI 293 >gi|149371570|ref|ZP_01890986.1| S-adenosyl-methyltransferase MraW [unidentified eubacterium SCB49] gi|149355197|gb|EDM43757.1| S-adenosyl-methyltransferase MraW [unidentified eubacterium SCB49] Length = 298 Score = 337 bits (866), Expect = 1e-90, Method: Composition-based stats. Identities = 101/304 (33%), Positives = 154/304 (50%), Gaps = 17/304 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H PVLL + L P V +D TFG GG+SR K +IA D+D A+ + Sbjct: 4 HNPVLLHPTVDGLAIKPDGVYVDVTFGGGGHSREILKRLGPNGKLIAFDQDKDALDNVID 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +F L F L+ ++ G VDG++ D GVSS Q D +RGFS + L Sbjct: 64 -----DPRFVLVNENFRFLKRFLRFHGHKQVDGILADFGVSSHQFDVAERGFSTRFEAEL 118 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S SA DVVN L+ +L GE + + IA I ++R++ P +T+ L Sbjct: 119 DMRMDQGSAFSAYDVVNNYEESQLSSVLFQYGELRASKGIARVICEKRKNGPIKTSDQLK 178 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 + + + + ++I + +QA+RI VN E+E + + L+ + + L GG L V+S+HS Sbjct: 179 EAVARFLPKHREHKI--LAQIYQAIRIEVNQELEVIKEFLQQSIEVLPVGGRLSVISYHS 236 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDRLVK+F + + + + P K ++P ++ N R+RSAKLR Sbjct: 237 LEDRLVKRFMRNGMFEGEPEKDVFGRAEVPMKP---VGKFIIPDAAEIKENNRARSAKLR 293 Query: 313 AGMR 316 + Sbjct: 294 IAKK 297 >gi|188994484|ref|YP_001928736.1| S-adenosyl-methyltransferase MraW [Porphyromonas gingivalis ATCC 33277] gi|262824880|sp|B2RIE4|RSMH_PORG3 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|188594164|dbj|BAG33139.1| putative S-adenosyl-methyltransferase MraW [Porphyromonas gingivalis ATCC 33277] Length = 311 Score = 337 bits (866), Expect = 1e-90, Method: Composition-based stats. Identities = 101/308 (32%), Positives = 160/308 (51%), Gaps = 17/308 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQE 76 H+PV+L + + L P +D TFG GG+SR+ + D+D A + Sbjct: 11 HIPVMLGECLEGLRIDPDGCYVDVTFGGGGHSRAIVEKLSSKGRLYGFDQDADACRNVLQ 70 Query: 77 TMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 E+F+ + F L +++ + GVDG++ DLGVSS D +RGFSF+ PL Sbjct: 71 -----DERFTFVPSNFRYLANFMDYYGEDGVDGILADLGVSSHHFDEEERGFSFRSESPL 125 Query: 134 -DMRMSCSGISASD-VVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS--APFQTTQ 189 DMRM+ + ++N+ + L+ + GE KQA R+A +IV R+S QT Sbjct: 126 LDMRMNARAGRNAAAILNEYDASSLSALFYHYGELKQARRLAASIVHYRESLSGGLQTVG 185 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L ++ + + + FQALRI VN+E+ L Q L +A L++GG L+V++ Sbjct: 186 QLLEAVRGLISPREEKK--QLACIFQALRIEVNDELGALQQMLEAALGCLRSGGRLVVMT 243 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 +HSLEDR+VK F + K + A + +Q IT+K + + ++++ N RSRSA Sbjct: 244 YHSLEDRMVKNFLRYGTVKAPDEDSLRLYGAPQSPWQQITRKPLTASTKELSDNPRSRSA 303 Query: 310 KLRAGMRT 317 KLR + Sbjct: 304 KLRIAEKI 311 >gi|119961336|ref|YP_947462.1| S-adenosyl-methyltransferase MraW [Arthrobacter aurescens TC1] gi|119948195|gb|ABM07106.1| putative S-adenosyl-methyltransferase mraW [Arthrobacter aurescens TC1] Length = 378 Score = 337 bits (866), Expect = 1e-90, Method: Composition-based stats. Identities = 122/328 (37%), Positives = 183/328 (55%), Gaps = 15/328 (4%) Query: 11 SAIHHTIGDHVPVLLEKVIALLNP------APGK--VILDATFGAGGYSRSFCKMGS--N 60 A T HVPVL ++ I LL P G+ V +DAT G GG+S + + + Sbjct: 51 DAAKPTSERHVPVLKDRCINLLAPGFEAARKRGERPVAIDATLGMGGHSEAMLQRFPDLH 110 Query: 61 VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQ 117 ++ +DRD A++ + + ++ L A + +++D + D GV G++ DLGVSS+Q Sbjct: 111 LVGIDRDEEALALAGARLEPFSDRTDLVHAVYDEIEDVLLDLGVPEVHGILMDLGVSSLQ 170 Query: 118 IDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 +D +RGF++ PLDMRM S G +A+DVVN + +L RI+ GEEK A RIA+ I Sbjct: 171 LDERERGFAYSYDAPLDMRMDTSRGQTAADVVNNYSEDELVRIIRKWGEEKFAGRIANRI 230 Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 V R PF TT +L I+ V + + HPA R+FQALRI VN E++ L + + +A Sbjct: 231 VNARAEKPFATTGELVEQIRSVVPAAAAKSGGHPAKRTFQALRIEVNEELDVLERAVPAA 290 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295 A GG ++V+S+HSLED++VK F + S + + H ++ITK VP Sbjct: 291 VAATAMGGRIVVMSYHSLEDKIVKSVFQAGSKSSAPLGFPVELEEHKPELKTITKGTEVP 350 Query: 296 TQEDVAFNRRSRSAKLRAGMRTVERSIE 323 T ++A N R+ SA+LRA R +R Sbjct: 351 TAAEIAENPRAASARLRAVERIKQRRDA 378 >gi|91786965|ref|YP_547917.1| S-adenosyl-methyltransferase MraW [Polaromonas sp. JS666] gi|123060224|sp|Q12EM3|RSMH_POLSJ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|91696190|gb|ABE43019.1| methyltransferase [Polaromonas sp. JS666] Length = 305 Score = 337 bits (866), Expect = 1e-90, Method: Composition-based stats. Identities = 119/308 (38%), Positives = 176/308 (57%), Gaps = 13/308 (4%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAV 71 H VLL + IA L+ P +DATFG GG+SR + A D+D A+ Sbjct: 2 QDTWTHRTVLLNEAIAALHINPDGHYIDATFGRGGHSRLLLSQLSPQGRLTAFDKDLDAI 61 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Q +FS+ F L +P GV+ DLGVSS QID RGFSF+ G Sbjct: 62 AEAQTI---TDPRFSIRHEGFMHLGQ-LPAASAAGVLMDLGVSSPQIDNPVRGFSFRSEG 117 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA-PFQTTQ 189 PLDMRM + G S ++ + A+++ + ++ GEE+ A ++A AI +RRQ P +TT Sbjct: 118 PLDMRMDTTRGQSVAEWLADASIETMAEVIREYGEERFAQQVAKAIDRRRQERGPLRTTA 177 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 +L+ ++ V + + PATR+FQALRIF+N E+EEL Q L ++ K L+ GG L+V+S Sbjct: 178 ELAEVVAGAVKTREPGK-DPATRTFQALRIFINAELEELQQALEASLKVLQPGGRLVVIS 236 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDR+VK+F A +S +V R + +++ + + P++E++A N RSRSA Sbjct: 237 FHSLEDRIVKQFIAGQSREVF-DRRAPFAAPKAMRLKALGR--IKPSEEEIAANPRSRSA 293 Query: 310 KLRAGMRT 317 +R RT Sbjct: 294 VMRVAERT 301 >gi|221202506|ref|ZP_03575536.1| S-adenosyl-methyltransferase MraW [Burkholderia multivorans CGD2M] gi|221208172|ref|ZP_03581177.1| S-adenosyl-methyltransferase MraW [Burkholderia multivorans CGD2] gi|221172075|gb|EEE04517.1| S-adenosyl-methyltransferase MraW [Burkholderia multivorans CGD2] gi|221177601|gb|EEE10018.1| S-adenosyl-methyltransferase MraW [Burkholderia multivorans CGD2M] Length = 313 Score = 337 bits (866), Expect = 1e-90, Method: Composition-based stats. Identities = 110/311 (35%), Positives = 172/311 (55%), Gaps = 19/311 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H VLL++ + L P + +D TFG GG+SR+ +IA D+DP A+ Q Sbjct: 7 HRTVLLDEAVESLVTRPDGIYVDGTFGRGGHSRAVLARLGPAGRLIAFDKDPRAIETAQA 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +FS+ +F+ ++ + +G V GV+ DLGVSS Q+D RGFSF+ GPL Sbjct: 67 MA---DARFSIVHDSFASMRGALAARGIEKVSGVLLDLGVSSPQVDDPARGFSFRADGPL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS----APFQTT 188 DMRM + G SA++ + +A++++LT ++ GEE+ A +IA A+V RR P +T Sbjct: 124 DMRMDPTRGESAAEWLARASLQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDST 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ ++ V + PATR+FQA+RI VN E+ +L L +A L+ GG L+V+ Sbjct: 184 GELAQIVGHVVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVI 242 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDVAFNRRS 306 SFHSLEDR+VK+F + + R + + + I + P++ +V N R+ Sbjct: 243 SFHSLEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPPLKIIGR--QFPSEAEVVANPRA 300 Query: 307 RSAKLRAGMRT 317 RSA +R R Sbjct: 301 RSAVMRIAERV 311 >gi|121606314|ref|YP_983643.1| S-adenosyl-methyltransferase MraW [Polaromonas naphthalenivorans CJ2] gi|262824843|sp|A1VSU4|RSMH_POLNA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|120595283|gb|ABM38722.1| S-adenosyl-methyltransferase MraW [Polaromonas naphthalenivorans CJ2] Length = 306 Score = 337 bits (865), Expect = 1e-90, Method: Composition-based stats. Identities = 127/307 (41%), Positives = 176/307 (57%), Gaps = 13/307 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQE 76 H VLL + I L P +DATFG GG+SR V A D+D A++ Q Sbjct: 8 HRTVLLNEAITALQVNPDGHYIDATFGRGGHSRLLLSQLSALGRVTAFDKDLDAIAEAQS 67 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 +FS+ F L +P V GV+ DLGVSS QID +RGFSF+ GPLDMR Sbjct: 68 I---DDPRFSIRHQGFMHLDQ-MPQASVAGVLMDLGVSSPQIDNPERGFSFRNEGPLDMR 123 Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQTTQDLSSL 194 M + G S ++ + A+++ +T ++ GEE+ A +A AI +RRQ P QTT +L+ + Sbjct: 124 MDTTRGQSVAEWLQDASIEAMTEVIRDYGEERFAGLVARAIDRRRQEHGPLQTTAELADV 183 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 + V + + PATR+FQALRIF+N E+EEL Q L+++ K L+ GG L+V+SFHSLE Sbjct: 184 VASAVKTREPGK-DPATRTFQALRIFINAELEELQQALQASLKVLQPGGRLVVISFHSLE 242 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 DR+VK+F A+ S +V R A P V Q ++E+VA N RSRSA +R Sbjct: 243 DRIVKQFIAAHSREVYDRRAPF---AAPKVMQLKALGRTKASEEEVAGNPRSRSAVMRVA 299 Query: 315 MRTVERS 321 RT E + Sbjct: 300 ERTGEAA 306 >gi|165377209|ref|NP_001107000.1| probable methyltransferase-like protein 15 isoform 1 [Homo sapiens] gi|160012249|sp|A6NJ78|MET15_HUMAN RecName: Full=Probable methyltransferase-like protein 15; AltName: Full=Methyltransferase 5 domain-containing protein 1 gi|119588672|gb|EAW68266.1| methyltransferase 5 domain containing 1, isoform CRA_a [Homo sapiens] Length = 407 Score = 337 bits (865), Expect = 1e-90, Method: Composition-based stats. Identities = 131/335 (39%), Positives = 186/335 (55%), Gaps = 38/335 (11%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H+PV++++V+ L+P G++ LD TFG+GG++++ + S+ + ALDRDP A + + Sbjct: 72 HIPVMVDEVVHCLSPQKGQIFLDMTFGSGGHTKAILQKESDIVLYALDRDPTAYALAEHL 131 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 Y +Q FSQ + + GV DGV+ DLG SSMQ+D +RGFS +K GP Sbjct: 132 SELYPKQIRAMLGQFSQAEALLMKAGVQPGTFDGVLMDLGCSSMQLDTPERGFSLRKDGP 191 Query: 133 LDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM +A+DVVN + + L IL GEEK A +IA AIV+ R P T Sbjct: 192 LDMRMDGGRYPDMPTAADVVNALDQQALASILRTYGEEKHAKKIASAIVQARSIYPITRT 251 Query: 189 QDLSSLIQKTVYFSK--------NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 Q L+S++ S H AT++FQALRIFVNNE+ EL GL++A+K L+ Sbjct: 252 QQLASIVAGAFPPSAIYTRKDLLQRSTHIATKTFQALRIFVNNELNELYTGLKTAQKFLR 311 Query: 241 AGGLLIVVSFHSLEDRLVKKFF-------------------ASRSGKVMAVRHMIPSNAH 281 GG L+ +SFHSLEDR+VK+F S+ G + Sbjct: 312 PGGRLVALSFHSLEDRIVKRFLLGISMTERFNLSVRQQVMKTSQLGSDHENTEEVSMRRA 371 Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 P +++ I KKV+ P +DV N R RSAKLRA ++ Sbjct: 372 PLMWELIHKKVLSPQDQDVQDNPRGRSAKLRAAIK 406 >gi|223937428|ref|ZP_03629333.1| S-adenosyl-methyltransferase MraW [bacterium Ellin514] gi|223893979|gb|EEF60435.1| S-adenosyl-methyltransferase MraW [bacterium Ellin514] Length = 300 Score = 337 bits (865), Expect = 1e-90, Method: Composition-based stats. Identities = 109/301 (36%), Positives = 165/301 (54%), Gaps = 8/301 (2%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRD 80 +L +V+A L G D T G G++ + + DRD AV Q + + Sbjct: 1 MLAEVLAALKVKSGGKYADGTLGGAGHATAILAASSPNGWLFGCDRDGVAVEAAQARLAE 60 Query: 81 YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC- 139 + +F + + +++L + + + DGV+ DLGVSS Q+D +RGFSFQ+ GPLDMRM Sbjct: 61 FAGRFEISRGNYAELFETLEPESFDGVLLDLGVSSPQLDVAERGFSFQQEGPLDMRMDKR 120 Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199 ++A+D++N A+ ++L I LG+E Q+ R A AI RQ PF+TT L+ LI++ Sbjct: 121 QQLTAADLLNHASAEELAEIFWKLGDEPQSRRFARAIEHDRQQRPFETTGQLAGLIERLA 180 Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259 + HPATR FQALR+ VN+E+ L +GL A + LK GG L V++FHSLEDR VK Sbjct: 181 P-RHGKKAHPATRVFQALRMAVNDELGSLERGLTGAVRILKPGGRLAVITFHSLEDRKVK 239 Query: 260 KFFASRSGKVMAVRHMIPSNAHPAV---FQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 +F +S + + + +K V+P + + N RSRSA+LR + Sbjct: 240 EFGRQKSRDYTFEGEVDVPELRKPRTPELKWVQRKAVLPGEAEQKENPRSRSAQLRIMEK 299 Query: 317 T 317 Sbjct: 300 I 300 >gi|167740320|ref|ZP_02413094.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 14] gi|226199616|ref|ZP_03795172.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei Pakistan 9] gi|225928362|gb|EEH24393.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei Pakistan 9] Length = 313 Score = 337 bits (865), Expect = 1e-90, Method: Composition-based stats. Identities = 111/312 (35%), Positives = 173/312 (55%), Gaps = 19/312 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H VLL++ + L P V +D TFG GG+SR+ +IA D+DP A+ + Sbjct: 7 HRTVLLDEAVDALVTRPDGVYVDGTFGRGGHSRAVLARLGYAGRLIAFDKDPRAIETAES 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +F + +F+ ++ + +G V GV+ DLGVSS Q+D RGFSF+ +GPL Sbjct: 67 I---EDARFEIVHDSFAAMKGALDARGIGRVSGVLLDLGVSSPQVDDPARGFSFRANGPL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS----APFQTT 188 DMRM + G SA++ + +A+V++LT ++ GEE+ A +IA AIV RR P +T Sbjct: 124 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRLGPLDST 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ ++ V + PATR+FQA+RI VN E+ +L L +A L+ GG L+V+ Sbjct: 184 GELAQIVGHVVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLEAALSLLEQGGRLVVI 242 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 SFHSLEDR+VK+F + + R + ++ + + + + P +VA N R+ Sbjct: 243 SFHSLEDRIVKRFLQAHASAPAVDRRLPIRAADLPSPPLKLLGR--MFPNDAEVAANPRA 300 Query: 307 RSAKLRAGMRTV 318 RSA +R R Sbjct: 301 RSAVMRIAERVA 312 >gi|84495974|ref|ZP_00994828.1| putative S-adenosylmethionine-dependent methyltransferase [Janibacter sp. HTCC2649] gi|84382742|gb|EAP98623.1| putative S-adenosylmethionine-dependent methyltransferase [Janibacter sp. HTCC2649] Length = 350 Score = 337 bits (865), Expect = 1e-90, Method: Composition-based stats. Identities = 114/309 (36%), Positives = 176/309 (56%), Gaps = 10/309 (3%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCG 74 HVPVL ++++ LL PA PG V++D T G GG++ +F + VI +DRD A++ Sbjct: 35 HVPVLRDRIVELLAPALTEPGSVLVDGTLGMGGHAEAFLEACPEATVIGIDRDEEALALA 94 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E + + ++F A + ++ D V D G V V+FDLGVSS+Q+D DRGF++ + Sbjct: 95 GERLARFGDRFRGVHAVYDEIGDVVKDLGLRDVQAVLFDLGVSSLQLDEADRGFAYAQDA 154 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM SGI+A++V+N DL RIL GEE+ A RI ++V+ R+ PF + Sbjct: 155 PLDMRMDQGSGITAAEVLNTYAPADLLRILRDFGEERFAKRIVSSVVRERELEPFTRSAR 214 Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L L++ V + + HPA R+FQALRI VN+E+ + + + L GG + V+S Sbjct: 215 LVELLRAAVPAASQRTGGHPAKRTFQALRIEVNDELGAWQRAVLGSIDVLAVGGRIAVLS 274 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 +HSLEDR+ K+ + + + H A + +T+ P++ + + N RS SA Sbjct: 275 YHSLEDRITKRALVAGATSSTPPGIPVELPEHAAYLRLLTRGAEEPSESEQSTNPRSASA 334 Query: 310 KLRAGMRTV 318 +LR RT Sbjct: 335 RLRVAERTR 343 >gi|288919045|ref|ZP_06413386.1| S-adenosyl-methyltransferase MraW [Frankia sp. EUN1f] gi|288349585|gb|EFC83821.1| S-adenosyl-methyltransferase MraW [Frankia sp. EUN1f] Length = 327 Score = 337 bits (865), Expect = 2e-90, Method: Composition-based stats. Identities = 121/313 (38%), Positives = 180/313 (57%), Gaps = 10/313 (3%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCG 74 H PVL E+V+ LL PA PG +++D T G GG+S + + +I LDRDP A++ Sbjct: 5 HTPVLTERVVELLTPAMQAPGAIVVDTTVGLGGHSLALLEAFPRARLIGLDRDPRALAYS 64 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + D + L + QL D + GV +G++FDLGVSSMQ+D +RGF++ + Sbjct: 65 RHRLADLGTRVDLVHMVYDQLPDALSGLGVAEVNGILFDLGVSSMQLDMDERGFAYSRDA 124 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM G +A+DV+N +V LTRIL GEE+ A RIA A+V RQ+APF T+ Sbjct: 125 PLDMRMDQERGPTAADVLNTYDVDSLTRILRNYGEERFARRIAQAVVSARQTAPFTTSAR 184 Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L LI+ + + + +PA R+FQALRI VN E++ L + L +A AL GG L+V+S Sbjct: 185 LVDLIRDAIPAAARRTGGNPAKRTFQALRIEVNTELDVLERALPAAFDALAVGGRLVVLS 244 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 +HSLEDRLVK+ R+ + + + + +T+ + +++ N R+ S Sbjct: 245 YHSLEDRLVKRSLGPRAVPAVPPDMPVIPDEARPTLRWLTRGAEPASDQEIERNARAGSV 304 Query: 310 KLRAGMRTVERSI 322 +LRA R Sbjct: 305 RLRAVERVAAEPG 317 >gi|300864772|ref|ZP_07109623.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Oscillatoria sp. PCC 6506] gi|300337241|emb|CBN54771.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Oscillatoria sp. PCC 6506] Length = 306 Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats. Identities = 112/307 (36%), Positives = 164/307 (53%), Gaps = 30/307 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 H+PVL ++I L G LDAT G GG++R +V +A+D+D A++ ++ Sbjct: 22 HIPVLGPQLIEGLAVRAGGHYLDATVGGGGHTRLILAAAPDVTIVAIDQDLDAIAFCKQQ 81 Query: 78 MRDY----KEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + ++ + + F+ + DG++ DLGVSS Q+D RGFSF+ L Sbjct: 82 LAEFLAPNSARIQFWHGNFASYP--AKESTFDGIIADLGVSSAQLDAPGRGFSFRHHANL 139 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ ++A+++VN L I GEE+ + RIA IV R PFQTT +L+ Sbjct: 140 DMRMNQQQSLTAAEIVNHWEEVKLADIFYTYGEERLSRRIARRIVGDR---PFQTTTELA 196 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 I + V + RIHPATR+FQALRI VN+E+ + L+ A + LK GG + ++SFH Sbjct: 197 EAIARCVPPKYRYGRIHPATRTFQALRIAVNSELTAVETFLKQAPQWLKPGGRMGIISFH 256 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDRL K S + + +TKK + P E+VA N R+RSAKL Sbjct: 257 SLEDRLAKHELKGSS-----------------LLRVLTKKPIQPATEEVAKNPRARSAKL 299 Query: 312 RAGMRTV 318 R R + Sbjct: 300 RLAERLI 306 >gi|295135641|ref|YP_003586317.1| S-adenosyl-methyltransferase MraW [Zunongwangia profunda SM-A87] gi|294983656|gb|ADF54121.1| S-adenosyl-methyltransferase MraW [Zunongwangia profunda SM-A87] Length = 298 Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats. Identities = 101/304 (33%), Positives = 168/304 (55%), Gaps = 17/304 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H PVLL++ + LN P V +D TFG GG+SR K + A D+D A+ E Sbjct: 4 HNPVLLKESVDGLNIKPDGVYVDVTFGGGGHSREILKRLGEHGKLFAFDQDTDALQNKIE 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +F+L F L+ ++ GV DG++ D GVSS Q + +RGFS + + L Sbjct: 64 -----DPRFTLINENFRFLKRFLRFYGVKKVDGILGDFGVSSHQFNEAERGFSTRFNAKL 118 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S +SA V+N+ + + L + + K A ++A IV R++ P + ++DL+ Sbjct: 119 DMRMDQSNSLSAYQVINEYDEEQLKSLFYQYADLKNAPKLARIIVSERKNKPIENSEDLN 178 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 L++ ++ K N+I + +QA+RI VN EIE L + L E ++ G + ++S+HS Sbjct: 179 ELLKPHLFKGKENKI--LAQIYQAIRIEVNQEIEVLKEFLLQTEDLVEKNGRISLISYHS 236 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDRLVK++ S + + + + P F+ + ++VP++++++ N R+RSAKLR Sbjct: 237 LEDRLVKRYIRSGLFEGEPEKDFYGNISVP--FKKV-GGLIVPSKQEISENNRARSAKLR 293 Query: 313 AGMR 316 + Sbjct: 294 IAKK 297 >gi|228472692|ref|ZP_04057452.1| S-adenosyl-methyltransferase MraW [Capnocytophaga gingivalis ATCC 33624] gi|228276105|gb|EEK14861.1| S-adenosyl-methyltransferase MraW [Capnocytophaga gingivalis ATCC 33624] Length = 305 Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats. Identities = 110/306 (35%), Positives = 168/306 (54%), Gaps = 17/306 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H+PVLL++ I L+ P +D TFG GG+SR+ + + A D+DP A + Sbjct: 7 HIPVLLQECIEGLSIDPAGTYVDVTFGGGGHSRAILERLSPQGRLFAFDQDPQAQANAIA 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++F+L F ++ ++ GV GV+ D GVSS Q D +RGFS + G L Sbjct: 67 -----DDRFTLIGQNFRHIKRFLRFYGVKEVSGVLGDFGVSSHQFDTAERGFSIRMEGEL 121 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +SA +VVN + ++L+ I GE Q+ ++A AIV+RR++AP TT DL Sbjct: 122 DMRMNPEQPLSAKEVVNGYSQEELSEIFFRYGELSQSRKLAQAIVQRRETAPIATTADLK 181 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++QK YF KN + +QA+RI VN E+ L + L +K G + ++S+HS Sbjct: 182 EVVQK--YFPKNQENKHLAQLYQAIRIEVNQELSALEELLLQLPDIVKPMGRIALISYHS 239 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDRL+K+F + + P F+ + K ++PT E++A N R+RSAKLR Sbjct: 240 LEDRLIKRFIRDGQFSGEPEKDFYGNIQVP--FRKV-GKPILPTAEEIARNNRARSAKLR 296 Query: 313 AGMRTV 318 R + Sbjct: 297 VAERVL 302 >gi|294056587|ref|YP_003550245.1| S-adenosyl-methyltransferase MraW [Coraliomargarita akajimensis DSM 45221] gi|293615920|gb|ADE56075.1| S-adenosyl-methyltransferase MraW [Coraliomargarita akajimensis DSM 45221] Length = 318 Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats. Identities = 120/306 (39%), Positives = 184/306 (60%), Gaps = 6/306 (1%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73 G HVPVLL + + LL+P G +LD TFG GG++R+ G V+ALDRDP AV Sbjct: 13 NYGGHVPVLLRETLELLSPRAGAKLLDGTFGGGGHTRALLGAAEGVTVVALDRDPEAVER 72 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 E ++ ++F L F L D + + G DG++FD G+SS Q+D +RGFSF++ P+ Sbjct: 73 AAEVEAEFGQRFRLVSMNFGDLCD-LEESGFDGILFDFGLSSFQLDTAERGFSFREDAPV 131 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ + GISA++ + A+ + L R + GEEK+ ++ +I+ R + Q T LS Sbjct: 132 DMRMNPNAGISAAEFLETADEEALVRAVRNYGEEKRWRKVVQSILSARGTGRLQRTSSLS 191 Query: 193 SLIQKTVYFSKNNR--IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 LI V R IHPATRSFQ +R+ VN+E+ + +GL +A + L++GG L +SF Sbjct: 192 ELIADAVGPGPRGRKTIHPATRSFQGIRVEVNDELNAIERGLPAAFERLQSGGTLAAISF 251 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDR+VK+F +G+ + + + I+ + +VP ++++A N RSRSA+ Sbjct: 252 HSLEDRIVKRFCRRMAGRPEHAGDSRTQDERQVLGKMISTRPIVPAEDEIAINPRSRSAR 311 Query: 311 LRAGMR 316 +RA + Sbjct: 312 MRAIRK 317 >gi|126454576|ref|YP_001067794.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 1106a] gi|134280340|ref|ZP_01767051.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 305] gi|167847424|ref|ZP_02472932.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei B7210] gi|167896013|ref|ZP_02483415.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 7894] gi|167904399|ref|ZP_02491604.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei NCTC 13177] gi|167920627|ref|ZP_02507718.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei BCC215] gi|242314397|ref|ZP_04813413.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 1106b] gi|254180538|ref|ZP_04887136.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 1655] gi|254199129|ref|ZP_04905544.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei S13] gi|263446924|sp|A3NZM3|RSMH_BURP0 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|126228218|gb|ABN91758.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 1106a] gi|134248347|gb|EBA48430.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 305] gi|169656959|gb|EDS88356.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei S13] gi|184211077|gb|EDU08120.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 1655] gi|242137636|gb|EES24038.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 1106b] Length = 313 Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats. Identities = 111/312 (35%), Positives = 173/312 (55%), Gaps = 19/312 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H VLL++ + L P V +D TFG GG+SR+ +IA D+DP A+ + Sbjct: 7 HRTVLLDEAVDALVTRPDGVYVDGTFGRGGHSRAVLARLGDAGRLIAFDKDPRAIETAES 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +F + +F+ ++ + +GV GV+ DLGVSS Q+D RGFSF+ +GPL Sbjct: 67 I---EDARFEIVHDSFAAMKGALDARGVGRVSGVLLDLGVSSPQVDDPARGFSFRANGPL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS----APFQTT 188 DMRM + G SA++ + +A+V++LT ++ GEE+ A +IA AIV RR P +T Sbjct: 124 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRLGPLDST 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ ++ V + PATR+FQA+RI VN E+ +L L +A L+ GG L+V+ Sbjct: 184 GELAQIVGHVVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLEAALSLLEQGGRLVVI 242 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 SFHSLEDR+VK+F + + R + ++ + + + + P +VA N R+ Sbjct: 243 SFHSLEDRIVKRFLQAHASAPAVDRRLPIRAADLPSPPLKLLGR--MFPNDAEVAANPRA 300 Query: 307 RSAKLRAGMRTV 318 RSA +R R Sbjct: 301 RSAVMRIAERVA 312 >gi|254391587|ref|ZP_05006786.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Streptomyces clavuligerus ATCC 27064] gi|294812140|ref|ZP_06770783.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Streptomyces clavuligerus ATCC 27064] gi|197705273|gb|EDY51085.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Streptomyces clavuligerus ATCC 27064] gi|294324739|gb|EFG06382.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Streptomyces clavuligerus ATCC 27064] Length = 318 Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats. Identities = 127/310 (40%), Positives = 182/310 (58%), Gaps = 10/310 (3%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 HVPV+L++ + LL PA PG V++D T G GG+S + +IALDRDP A+ Sbjct: 6 HVPVMLQRCLDLLAPALESPGAVVVDCTLGLGGHSEALLSRFPGVRLIALDRDPEALRLS 65 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E + Y E+ +L A + +L + GV GV+FDLGVSSMQ+D DRGF++ + Sbjct: 66 AERLAPYGERATLVHAVYDELPAVLARLGVPRVQGVLFDLGVSSMQLDEADRGFAYAQDA 125 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + G+SA++V+N +L RIL GEEKQA RI AIV+ R + PF T+ Sbjct: 126 PLDMRMDQTTGMSAAEVLNTYPPGELVRILRAYGEEKQAKRIVSAIVRERVNEPFSTSAR 185 Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L LI+ + +K +PA R+FQALRI VN E+ L + + +A AL G + V+S Sbjct: 186 LVELIRDALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAVPAAVAALAVEGRIAVLS 245 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 +HSLEDRLVK+ FA+ + + + + +T+ +PT ++VA NRR+ A Sbjct: 246 YHSLEDRLVKQVFAAGAATTAPPGLPVVPEEYQPRLRLLTRGAELPTDDEVAENRRAAPA 305 Query: 310 KLRAGMRTVE 319 +LR R E Sbjct: 306 RLRGAQRIRE 315 >gi|263447893|sp|A1R5F0|RSMH_ARTAT RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 332 Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats. Identities = 122/328 (37%), Positives = 183/328 (55%), Gaps = 15/328 (4%) Query: 11 SAIHHTIGDHVPVLLEKVIALLNP------APGK--VILDATFGAGGYSRSFCKMGS--N 60 A T HVPVL ++ I LL P G+ V +DAT G GG+S + + + Sbjct: 5 DAAKPTSERHVPVLKDRCINLLAPGFEAARKRGERPVAIDATLGMGGHSEAMLQRFPDLH 64 Query: 61 VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQ 117 ++ +DRD A++ + + ++ L A + +++D + D GV G++ DLGVSS+Q Sbjct: 65 LVGIDRDEEALALAGARLEPFSDRTDLVHAVYDEIEDVLLDLGVPEVHGILMDLGVSSLQ 124 Query: 118 IDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 +D +RGF++ PLDMRM S G +A+DVVN + +L RI+ GEEK A RIA+ I Sbjct: 125 LDERERGFAYSYDAPLDMRMDTSRGQTAADVVNNYSEDELVRIIRKWGEEKFAGRIANRI 184 Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 V R PF TT +L I+ V + + HPA R+FQALRI VN E++ L + + +A Sbjct: 185 VNARAEKPFATTGELVEQIRSVVPAAAAKSGGHPAKRTFQALRIEVNEELDVLERAVPAA 244 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295 A GG ++V+S+HSLED++VK F + S + + H ++ITK VP Sbjct: 245 VAATAMGGRIVVMSYHSLEDKIVKSVFQAGSKSSAPLGFPVELEEHKPELKTITKGTEVP 304 Query: 296 TQEDVAFNRRSRSAKLRAGMRTVERSIE 323 T ++A N R+ SA+LRA R +R Sbjct: 305 TAAEIAENPRAASARLRAVERIKQRRDA 332 >gi|163794519|ref|ZP_02188490.1| S-adenosyl-methyltransferase mraW [alpha proteobacterium BAL199] gi|159180243|gb|EDP64766.1| S-adenosyl-methyltransferase mraW [alpha proteobacterium BAL199] Length = 326 Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats. Identities = 121/288 (42%), Positives = 166/288 (57%), Gaps = 10/288 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQETM 78 H+PV+LE V+ L P G +D TFG GGY+R+ V A+DRDP A+ Sbjct: 8 HIPVMLEPVVEALAPRDGGRYVDGTFGVGGYTRALLTAANCTVYAIDRDPEAIRRAGILA 67 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 +++ + + F + V + G VDG+ DLGVSS QID +RGFSF+ GPLDM Sbjct: 68 QEFGGRLIAIEGRFGAMDQLVANAGAAQVDGIALDLGVSSPQIDDAERGFSFRFDGPLDM 127 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RM +G SA+DVVN A +L I+ LGEE+ A R+A A+V R + P T +L++++ Sbjct: 128 RMEKAGPSAADVVNGATEAELADIVFYLGEERYARRVARALVAARLNGPITRTGELAAIV 187 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 ++ V SK+ I ATR+FQALRI VN E++EL GL +AE+ L GG L VVSFHSLED Sbjct: 188 RRVVPSSKSGGIDSATRTFQALRIHVNRELDELDHGLEAAERLLSPGGRLAVVSFHSLED 247 Query: 256 RLVKKFFASRSGKVMAVRHMI------PSNAHPAVFQSITKKVVVPTQ 297 R VK F RSG+ P + F+ IT + + P+ Sbjct: 248 RRVKTFLRRRSGRTSGPSRHAMAAIAGPVDGPRPTFEVITGRPIAPSD 295 >gi|53720643|ref|YP_109629.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei K96243] gi|167817538|ref|ZP_02449218.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 91] gi|115311582|sp|Q63QI9|RSMH_BURPS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|52211057|emb|CAH37045.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei K96243] Length = 313 Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats. Identities = 111/312 (35%), Positives = 173/312 (55%), Gaps = 19/312 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H VLL++ + L P V +D TFG GG+SR+ +IA D+DP A+ + Sbjct: 7 HRTVLLDEAVDALVTRPDGVYVDGTFGRGGHSRAVLARLGYAGRLIAFDKDPRAIETAES 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +F + +F+ ++ + +G V GV+ DLGVSS Q+D RGFSF+ +GPL Sbjct: 67 I---EDARFEIVHDSFAAMKGALDARGIGRVSGVLLDLGVSSPQVDDPARGFSFRANGPL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS----APFQTT 188 DMRM + G SA++ + +A+V++LT ++ GEE+ A +IA AIV RR P +T Sbjct: 124 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRLGPLDST 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ ++ V + PATR+FQA+RI VN E+ +L L +A L+ GG L+V+ Sbjct: 184 GELAQIVGHVVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLEAALSLLEQGGRLVVI 242 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 SFHSLEDR+VK+F + + R + ++ + + + + P +VA N R+ Sbjct: 243 SFHSLEDRIVKRFLQAHASAPAVDRRLPIRAADLPRPPLKLLGR--MFPNDAEVAANPRA 300 Query: 307 RSAKLRAGMRTV 318 RSA +R R Sbjct: 301 RSAVMRIAERVA 312 >gi|254191020|ref|ZP_04897526.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei Pasteur 52237] gi|157938694|gb|EDO94364.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei Pasteur 52237] Length = 313 Score = 336 bits (863), Expect = 2e-90, Method: Composition-based stats. Identities = 111/312 (35%), Positives = 173/312 (55%), Gaps = 19/312 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H VLL++ + L P V +D TFG GG+SR+ +IA D+DP A+ + Sbjct: 7 HRTVLLDEAVDALVTRPDGVYVDGTFGRGGHSRAVLARLGDAGRLIAFDKDPRAIETAES 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +F + +F+ ++ + +G V GV+ DLGVSS Q+D RGFSF+ +GPL Sbjct: 67 I---EDARFEIVHDSFAAMKGALDARGIGRVSGVLLDLGVSSPQVDDPARGFSFRANGPL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS----APFQTT 188 DMRM + G SA++ + +A+V++LT ++ GEE+ A +IA AIV RR P +T Sbjct: 124 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRLGPLDST 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ ++ V + PATR+FQA+RI VN E+ +L L +A L+ GG L+V+ Sbjct: 184 GELAQIVGHVVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLEAALSLLEQGGRLVVI 242 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 SFHSLEDR+VK+F + + R + ++ + + + + P +VA N R+ Sbjct: 243 SFHSLEDRIVKRFLQAHASAPAVDRRLPIRAADLPSPPLKLLGR--MFPNDAEVAANPRA 300 Query: 307 RSAKLRAGMRTV 318 RSA +R R Sbjct: 301 RSAVMRIAERVA 312 >gi|113869234|ref|YP_727723.1| S-adenosyl-methyltransferase MraW [Ralstonia eutropha H16] gi|123032664|sp|Q0K6L6|RSMH_RALEH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|113528010|emb|CAJ94355.1| conserved hypothetical protein [Ralstonia eutropha H16] Length = 333 Score = 336 bits (863), Expect = 2e-90, Method: Composition-based stats. Identities = 119/317 (37%), Positives = 181/317 (57%), Gaps = 21/317 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H VLL++ + L P V +D TFG GG+SR+ ++A D+DP A++ Sbjct: 14 HRTVLLDEAVDALVWRPDGVYVDGTFGRGGHSRAVLARLGPDGALVAFDKDPAAIAEAGT 73 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 +FS+ A+F+ + + + +G V GV+ DLG+SS QID RGFSF+ GPLDM Sbjct: 74 I---KDARFSIEHASFAAMAERLSGRGHVAGVLLDLGISSPQIDEAARGFSFRFEGPLDM 130 Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS----APFQTTQD 190 RM + GI+A+ + QA+ +D+ R++ GEE+ A +IA AIV RR P TT D Sbjct: 131 RMDTTRGITAAQWLAQADEQDIARVIRDYGEERFAVQIAKAIVARRSEPGDGGPIATTAD 190 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L++L+ K V + PATR+FQALRI VN E+E+L +GL++A + L+ GG L+V+SF Sbjct: 191 LAALVAKAVKT-REKGQDPATRTFQALRIHVNQELEDLERGLKAAYELLQVGGRLVVISF 249 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIP------SNAHPAVFQSITKKVVVPTQEDVAFNR 304 HSLEDR+VK+F A+ + + ++ + + + P E+VA N Sbjct: 250 HSLEDRIVKRFMAAHARPQQDADPALRRAPLRAADLPQPTLRLLGR--YKPGPEEVAANP 307 Query: 305 RSRSAKLRAGMRTVERS 321 R+RSA +R + + Sbjct: 308 RARSAVMRVAEKLAPAA 324 >gi|308232054|ref|ZP_07663988.1| hypothetical protein TMAG_00354 [Mycobacterium tuberculosis SUMu001] gi|308370931|ref|ZP_07667052.1| hypothetical protein TMCG_00261 [Mycobacterium tuberculosis SUMu003] gi|308372156|ref|ZP_07667311.1| hypothetical protein TMDG_00643 [Mycobacterium tuberculosis SUMu004] gi|308215154|gb|EFO74553.1| hypothetical protein TMAG_00354 [Mycobacterium tuberculosis SUMu001] gi|308330345|gb|EFP19196.1| hypothetical protein TMCG_00261 [Mycobacterium tuberculosis SUMu003] gi|308334178|gb|EFP23029.1| hypothetical protein TMDG_00643 [Mycobacterium tuberculosis SUMu004] Length = 405 Score = 336 bits (863), Expect = 2e-90, Method: Composition-based stats. Identities = 117/320 (36%), Positives = 175/320 (54%), Gaps = 18/320 (5%) Query: 20 HVPVLLEKVIALLNPA-----PGK---VILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69 HVPVL ++ LL PA P V+LDAT GAGG++ F + +I LDRDP Sbjct: 74 HVPVLAQRCFELLTPALTRYYPDGSQAVLLDATIGAGGHAERFLEGLPGLRLIGLDRDPT 133 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSSMQIDCGDR 123 A+ + + + ++ +L + L + + G VDG++FDLGVSSMQ+D +R Sbjct: 134 ALDVARSRLVRFADRLTLVHTRYDCLGAALAESGYAAVGSVDGILFDLGVSSMQLDRAER 193 Query: 124 GFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GF++ PLDMRM + ++A+D+VN + L IL GEE+ A RIA IV+RR Sbjct: 194 GFAYATDAPLDMRMDPTTPLTAADIVNTYDEAALADILRRYGEERFARRIAAGIVRRRAK 253 Query: 183 APFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 PF +T +L +L+ + + ++ HPA R+FQALRI VN+E+E L + +A AL Sbjct: 254 TPFTSTAELVALLYQAIPAPARRVGGHPAKRTFQALRIAVNDELESLRTAVPAALDALAI 313 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 GG + V+++ SLEDR+VK+ FA + H F+S+T + ++ Sbjct: 314 GGRIAVLAYQSLEDRIVKRVFAEAVASATPAGLPVELPGHEPRFRSLTHGAERASVAEIE 373 Query: 302 FNRRSRSAKLRAGMRTVERS 321 N RS +LRA R R+ Sbjct: 374 RNPRSTPVRLRALQRVEHRA 393 >gi|331696613|ref|YP_004332852.1| ribosomal RNA small subunit methyltransferase H [Pseudonocardia dioxanivorans CB1190] gi|326951302|gb|AEA24999.1| Ribosomal RNA small subunit methyltransferase H [Pseudonocardia dioxanivorans CB1190] Length = 326 Score = 336 bits (863), Expect = 2e-90, Method: Composition-based stats. Identities = 119/314 (37%), Positives = 178/314 (56%), Gaps = 10/314 (3%) Query: 18 GDHVPVLLEKVIALLNPAPGK---VILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVS 72 HVPVLL +V+ LL PA V++DAT G GG+S + + + LDRDP A+ Sbjct: 13 ARHVPVLLPRVLELLGPALAGRPAVVVDATLGLGGHSAALLAAHPELTLVGLDRDPQALE 72 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 + + ++ L A + ++ D + + G DGV+FDLGVSS+Q+D +RGFS+ + Sbjct: 73 LAGRRLVAFADRTHLVHAVYDRIADVLAELGLPGADGVLFDLGVSSLQLDADERGFSYSR 132 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM + G +A+DV+N V +L RIL GEE+ A RIA AI + R PF + Sbjct: 133 DADLDMRMDPTTGPTAADVLNTYAVPELARILREYGEERFAGRIAAAIGRARDRRPFTRS 192 Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L L+ +TV + + HPA R+FQALRI VN E++ L + +A +L GG ++V Sbjct: 193 SELVELLYETVPAASRRTGGHPAKRTFQALRIEVNGELDALRAAVPAAIDSLTVGGRIVV 252 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +S+HSLEDRLVK+ A+RS + H + + + ++E+V N R+ Sbjct: 253 LSYHSLEDRLVKRELAARSVSTTPQDLPVELPGHGPELRLLVRGSQQASEEEVGENPRAA 312 Query: 308 SAKLRAGMRTVERS 321 S +LRA R E + Sbjct: 313 SVRLRAAERIREAA 326 >gi|194290821|ref|YP_002006728.1| s-adenosyl-methyltransferase mraw [Cupriavidus taiwanensis LMG 19424] gi|263446166|sp|B3R6W7|RSMH_CUPTR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|193224656|emb|CAQ70667.1| S-adenosyl-dependent methyl transferase [Cupriavidus taiwanensis LMG 19424] Length = 329 Score = 336 bits (863), Expect = 3e-90, Method: Composition-based stats. Identities = 119/322 (36%), Positives = 180/322 (55%), Gaps = 21/322 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H VLL++ + L P V +D TFG GG+SR+ ++A D+DP A++ Sbjct: 14 HRTVLLDEAVDALVWRPDGVYVDGTFGRGGHSRAVLARLGPDGALVAFDKDPAAIAEAGT 73 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 +FS+ A+F+ + + + +G V GV+ DLG+SS QID RGFSF+ GPLDM Sbjct: 74 I---KDARFSIEHASFAAMAERLAGRGHVAGVLLDLGISSPQIDEAARGFSFRFEGPLDM 130 Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS----APFQTTQD 190 RM + GI+A+ + QA+ +D+ R++ GEE+ A +IA AIV RR P TT D Sbjct: 131 RMDTTRGITAAQWLAQADEQDIARVIRDYGEERFAVQIAKAIVARRSESGDGGPVATTAD 190 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L++L+ K V + PATR+FQALRI VN E+E+L +GL++A L+ GG L+V+SF Sbjct: 191 LAALVAKAVKT-REKGQDPATRTFQALRIHVNQELEDLERGLKAAYDLLQVGGRLVVISF 249 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIP------SNAHPAVFQSITKKVVVPTQEDVAFNR 304 HSLEDR+VK+F A+ + + ++ + + + P E+VA N Sbjct: 250 HSLEDRIVKRFMAAHARPQQDADPALRRAPLRAADLPQPTLRLLGR--YKPGAEEVAANP 307 Query: 305 RSRSAKLRAGMRTVERSIEDDS 326 R+RSA +R + + Sbjct: 308 RARSAVMRVAEKLAPAGGGARA 329 >gi|53726017|ref|YP_104102.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei ATCC 23344] gi|67643637|ref|ZP_00442382.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei GB8 horse 4] gi|121598510|ref|YP_991829.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei SAVP1] gi|124386348|ref|YP_001027322.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei NCTC 10229] gi|126438415|ref|YP_001060543.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 668] gi|126449153|ref|YP_001082741.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei NCTC 10247] gi|162210064|ref|YP_334923.2| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 1710b] gi|166998645|ref|ZP_02264503.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei PRL-20] gi|167721351|ref|ZP_02404587.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei DM98] gi|254179030|ref|ZP_04885684.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei ATCC 10399] gi|254202823|ref|ZP_04909186.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei FMH] gi|254208165|ref|ZP_04914515.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei JHU] gi|254259496|ref|ZP_04950550.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 1710a] gi|254357631|ref|ZP_04973905.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei 2002721280] gi|88909189|sp|Q3JND0|RSMH_BURP1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|115311581|sp|Q62GR9|RSMH_BURMA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446914|sp|A3MR55|RSMH_BURM7 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446917|sp|A2S5V3|RSMH_BURM9 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446920|sp|A1V0S6|RSMH_BURMS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446928|sp|A3NDX2|RSMH_BURP6 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|52429440|gb|AAU50033.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei ATCC 23344] gi|121227320|gb|ABM49838.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei SAVP1] gi|124294368|gb|ABN03637.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei NCTC 10229] gi|126217908|gb|ABN81414.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 668] gi|126242023|gb|ABO05116.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei NCTC 10247] gi|147747070|gb|EDK54147.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei FMH] gi|147752059|gb|EDK59126.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei JHU] gi|148026695|gb|EDK84780.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei 2002721280] gi|160694944|gb|EDP84952.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei ATCC 10399] gi|238525016|gb|EEP88446.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei GB8 horse 4] gi|243065324|gb|EES47510.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei PRL-20] gi|254218185|gb|EET07569.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 1710a] Length = 313 Score = 336 bits (863), Expect = 3e-90, Method: Composition-based stats. Identities = 111/312 (35%), Positives = 173/312 (55%), Gaps = 19/312 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H VLL++ + L P V +D TFG GG+SR+ +IA D+DP A+ + Sbjct: 7 HRTVLLDEAVDALVTRPDGVYVDGTFGRGGHSRAVLARLGDAGRLIAFDKDPRAIETAES 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +F + +F+ ++ + +GV GV+ DLGVSS Q+D RGFSF+ +GPL Sbjct: 67 I---EDARFEIVHDSFAAMKGALDARGVGRVSGVLLDLGVSSPQVDDPARGFSFRANGPL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS----APFQTT 188 DMRM + G SA++ + +A+V++LT ++ GEE+ A +IA AIV RR P +T Sbjct: 124 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRLGPLDST 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ ++ V + PATR+FQA+RI VN E+ +L L +A L+ GG L+V+ Sbjct: 184 GELAQIVGHVVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLEAALSLLEQGGRLVVI 242 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 SFHSLEDR+VK+F + + R + ++ + + + + P +VA N R+ Sbjct: 243 SFHSLEDRIVKRFLQAHASAPAVDRRLPIRAADLPRPPLKLLGR--MFPNDAEVAANPRA 300 Query: 307 RSAKLRAGMRTV 318 RSA +R R Sbjct: 301 RSAVMRIAERVA 312 >gi|308380285|ref|ZP_07669154.1| hypothetical protein TMKG_00427 [Mycobacterium tuberculosis SUMu011] gi|308361967|gb|EFP50818.1| hypothetical protein TMKG_00427 [Mycobacterium tuberculosis SUMu011] Length = 425 Score = 336 bits (863), Expect = 3e-90, Method: Composition-based stats. Identities = 117/320 (36%), Positives = 175/320 (54%), Gaps = 18/320 (5%) Query: 20 HVPVLLEKVIALLNPA-----PGK---VILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69 HVPVL ++ LL PA P V+LDAT GAGG++ F + +I LDRDP Sbjct: 94 HVPVLAQRCFELLTPALTRYYPDGSQAVLLDATIGAGGHAERFLEGLPGLRLIGLDRDPT 153 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSSMQIDCGDR 123 A+ + + + ++ +L + L + + G VDG++FDLGVSSMQ+D +R Sbjct: 154 ALDVARSRLVRFADRLTLVHTRYDCLGAALAESGYAAVGSVDGILFDLGVSSMQLDRAER 213 Query: 124 GFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GF++ PLDMRM + ++A+D+VN + L IL GEE+ A RIA IV+RR Sbjct: 214 GFAYATDAPLDMRMDPTTPLTAADIVNTYDEAALADILRRYGEERFARRIAAGIVRRRAK 273 Query: 183 APFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 PF +T +L +L+ + + ++ HPA R+FQALRI VN+E+E L + +A AL Sbjct: 274 TPFTSTAELVALLYQAIPAPARRVGGHPAKRTFQALRIAVNDELESLRTAVPAALDALAI 333 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 GG + V+++ SLEDR+VK+ FA + H F+S+T + ++ Sbjct: 334 GGRIAVLAYQSLEDRIVKRVFAEAVASATPAGLPVELPGHEPRFRSLTHGAERASVAEIE 393 Query: 302 FNRRSRSAKLRAGMRTVERS 321 N RS +LRA R R+ Sbjct: 394 RNPRSTPVRLRALQRVEHRA 413 >gi|254299374|ref|ZP_04966824.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 406e] gi|157808911|gb|EDO86081.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 406e] Length = 319 Score = 336 bits (863), Expect = 3e-90, Method: Composition-based stats. Identities = 111/312 (35%), Positives = 173/312 (55%), Gaps = 19/312 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H VLL++ + L P V +D TFG GG+SR+ +IA D+DP A+ + Sbjct: 13 HRTVLLDEAVDALVTRPDGVYVDGTFGRGGHSRAVLARLGDAGRLIAFDKDPRAIETAES 72 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +F + +F+ ++ + +GV GV+ DLGVSS Q+D RGFSF+ +GPL Sbjct: 73 I---EDARFEIVHDSFAAMKGALDARGVGRVSGVLLDLGVSSPQVDDPARGFSFRANGPL 129 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS----APFQTT 188 DMRM + G SA++ + +A+V++LT ++ GEE+ A +IA AIV RR P +T Sbjct: 130 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRLGPLDST 189 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ ++ V + PATR+FQA+RI VN E+ +L L +A L+ GG L+V+ Sbjct: 190 GELAQIVGHVVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLEAALSLLEQGGRLVVI 248 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 SFHSLEDR+VK+F + + R + ++ + + + + P +VA N R+ Sbjct: 249 SFHSLEDRIVKRFLQAHASAPAVDRRLPIRAADLPRPPLKLLGR--MFPNDAEVAANPRA 306 Query: 307 RSAKLRAGMRTV 318 RSA +R R Sbjct: 307 RSAVMRIAERVA 318 >gi|15616841|ref|NP_240054.1| hypothetical protein BU224 [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681595|ref|YP_002467981.1| hypothetical protein BUAP5A_220 [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|257471280|ref|ZP_05635279.1| hypothetical protein BaphL_01110 [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|11387278|sp|P57319|RSMH_BUCAI RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|254813207|sp|B8D922|RSMH_BUCA5 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|25302081|pir||D84956 hypothetical protein [imported] - Buchnera sp. (strain APS) gi|10038905|dbj|BAB12940.1| hypothetical protein [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219624438|gb|ACL30593.1| hypothetical protein BUAP5A_220 [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] Length = 312 Score = 336 bits (862), Expect = 3e-90, Method: Composition-based stats. Identities = 123/312 (39%), Positives = 187/312 (59%), Gaps = 19/312 (6%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSC 73 I H+PV+ +++I L + +D+TFG GG+S K + ++DRDP A S Sbjct: 4 IFKHIPVMKKELIDSLKIKKNGIYIDSTFGTGGHSNEILKKLGQNGRLYSIDRDPIAFSI 63 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQK 129 G E +F + FS+L D+ ++ V+G++FDLGVSS+QID RGFSF+ Sbjct: 64 GSEI---KDSRFHIINENFSKLLDFAKNEKIIGKVNGIIFDLGVSSIQIDDYRRGFSFKN 120 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM+ + GISAS+ + ++NVK+++ +L GEE+ + +IA+AI +R Q +T Sbjct: 121 DGPLDMRMNPNYGISASEWLFESNVKEISFVLKNFGEERFSRKIAYAIKRRSQIKKITST 180 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+++I+KT+ KN HPA RSFQA+RI++N E+EE+ + L S K LK GG + ++ Sbjct: 181 LELANIIKKTIPT-KNKFKHPARRSFQAIRIYINQELEEIQKALESTLKILKPGGRISII 239 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFN 303 SFHSLEDRLVKKF S K + M + + I + ++PTQ ++ N Sbjct: 240 SFHSLEDRLVKKFMIKNSTKAIIPYGMPITEEQLNRLTTCKLKIINR--ILPTQNEINNN 297 Query: 304 RRSRSAKLRAGM 315 R+RS+ LR Sbjct: 298 PRARSSVLRIAE 309 >gi|237813927|ref|YP_002898378.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei MSHR346] gi|237506330|gb|ACQ98648.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei MSHR346] Length = 313 Score = 336 bits (862), Expect = 3e-90, Method: Composition-based stats. Identities = 111/312 (35%), Positives = 173/312 (55%), Gaps = 19/312 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H VLL++ + L P V +D TFG GG+SR+ +IA D+DP A+ + Sbjct: 7 HRTVLLDEAVDALVTRPDGVYVDGTFGRGGHSRAVLARLGDAGRLIAFDKDPRAIETAES 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +F + +F+ ++ + +GV GV+ DLGVSS Q+D RGFSF+ +GPL Sbjct: 67 I---EDARFEIVHDSFAAMKGALDARGVGRVSGVLLDLGVSSPQVDDPARGFSFRANGPL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS----APFQTT 188 DMRM + G SA++ + +A+V++LT ++ GEE+ A +IA AIV RR P +T Sbjct: 124 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRLGPLDST 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ ++ V + PATR+FQA+RI VN E+ +L L +A L+ GG L+V+ Sbjct: 184 GELAQIVGHVVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLEAALSLLEQGGRLVVI 242 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 SFHSLEDR+VK+F + + R + ++ + + + + P +VA N R+ Sbjct: 243 SFHSLEDRIVKRFLQAHASAPAVDRRLPIRAADRPSPPLKLLGR--MFPNDAEVAANPRA 300 Query: 307 RSAKLRAGMRTV 318 RSA +R R Sbjct: 301 RSAVMRIAERVA 312 >gi|121638047|ref|YP_978271.1| S-adenosyl-methyltransferase MraW [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148661981|ref|YP_001283504.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis H37Ra] gi|148823374|ref|YP_001288128.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis F11] gi|224990541|ref|YP_002645228.1| S-adenosyl-methyltransferase [Mycobacterium bovis BCG str. Tokyo 172] gi|253798770|ref|YP_003031771.1| methylase MraW [Mycobacterium tuberculosis KZN 1435] gi|254364966|ref|ZP_04981012.1| conserved hypothetical protein [Mycobacterium tuberculosis str. Haarlem] gi|260205463|ref|ZP_05772954.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis K85] gi|289443672|ref|ZP_06433416.1| MraW methylase MraW [Mycobacterium tuberculosis T46] gi|289447793|ref|ZP_06437537.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis CPHL_A] gi|289554048|ref|ZP_06443258.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605] gi|289570281|ref|ZP_06450508.1| conserved hypothetical protein [Mycobacterium tuberculosis T17] gi|289574851|ref|ZP_06455078.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis K85] gi|289745439|ref|ZP_06504817.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis 02_1987] gi|289750761|ref|ZP_06510139.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] gi|289754275|ref|ZP_06513653.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis EAS054] gi|289758287|ref|ZP_06517665.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis T85] gi|289762326|ref|ZP_06521704.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] gi|297731746|ref|ZP_06960864.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis KZN R506] gi|298525659|ref|ZP_07013068.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis 94_M4241A] gi|306793634|ref|ZP_07431936.1| hypothetical protein TMEG_02533 [Mycobacterium tuberculosis SUMu005] gi|308375796|ref|ZP_07668118.1| hypothetical protein TMGG_00723 [Mycobacterium tuberculosis SUMu007] gi|308376929|ref|ZP_07668385.1| hypothetical protein TMHG_01355 [Mycobacterium tuberculosis SUMu008] gi|308377928|ref|ZP_07668626.1| hypothetical protein TMIG_00833 [Mycobacterium tuberculosis SUMu009] gi|308379135|ref|ZP_07668903.1| hypothetical protein TMJG_00427 [Mycobacterium tuberculosis SUMu010] gi|2104313|emb|CAB08662.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv] gi|31618937|emb|CAD97042.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97] gi|121493695|emb|CAL72170.1| Conserved hypothetical protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|134150480|gb|EBA42525.1| conserved hypothetical protein [Mycobacterium tuberculosis str. Haarlem] gi|148506133|gb|ABQ73942.1| S-adenosyl-methyltransferase [Mycobacterium tuberculosis H37Ra] gi|148721901|gb|ABR06526.1| conserved hypothetical protein [Mycobacterium tuberculosis F11] gi|224773654|dbj|BAH26460.1| S-adenosyl-methyltransferase [Mycobacterium bovis BCG str. Tokyo 172] gi|253320273|gb|ACT24876.1| methylase MraW [Mycobacterium tuberculosis KZN 1435] gi|289416591|gb|EFD13831.1| MraW methylase MraW [Mycobacterium tuberculosis T46] gi|289420751|gb|EFD17952.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis CPHL_A] gi|289438680|gb|EFD21173.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605] gi|289539282|gb|EFD43860.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis K85] gi|289544035|gb|EFD47683.1| conserved hypothetical protein [Mycobacterium tuberculosis T17] gi|289685967|gb|EFD53455.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis 02_1987] gi|289691348|gb|EFD58777.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] gi|289694862|gb|EFD62291.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis EAS054] gi|289709832|gb|EFD73848.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] gi|289713851|gb|EFD77863.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis T85] gi|298495453|gb|EFI30747.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis 94_M4241A] gi|308337978|gb|EFP26829.1| hypothetical protein TMEG_02533 [Mycobacterium tuberculosis SUMu005] gi|308345155|gb|EFP34006.1| hypothetical protein TMGG_00723 [Mycobacterium tuberculosis SUMu007] gi|308349457|gb|EFP38308.1| hypothetical protein TMHG_01355 [Mycobacterium tuberculosis SUMu008] gi|308354088|gb|EFP42939.1| hypothetical protein TMIG_00833 [Mycobacterium tuberculosis SUMu009] gi|308358031|gb|EFP46882.1| hypothetical protein TMJG_00427 [Mycobacterium tuberculosis SUMu010] gi|326903782|gb|EGE50715.1| hypothetical protein TBPG_01665 [Mycobacterium tuberculosis W-148] gi|328458533|gb|AEB03956.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 4207] Length = 396 Score = 336 bits (862), Expect = 3e-90, Method: Composition-based stats. Identities = 117/320 (36%), Positives = 175/320 (54%), Gaps = 18/320 (5%) Query: 20 HVPVLLEKVIALLNPA-----PGK---VILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69 HVPVL ++ LL PA P V+LDAT GAGG++ F + +I LDRDP Sbjct: 65 HVPVLAQRCFELLTPALTRYYPDGSQAVLLDATIGAGGHAERFLEGLPGLRLIGLDRDPT 124 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSSMQIDCGDR 123 A+ + + + ++ +L + L + + G VDG++FDLGVSSMQ+D +R Sbjct: 125 ALDVARSRLVRFADRLTLVHTRYDCLGAALAESGYAAVGSVDGILFDLGVSSMQLDRAER 184 Query: 124 GFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GF++ PLDMRM + ++A+D+VN + L IL GEE+ A RIA IV+RR Sbjct: 185 GFAYATDAPLDMRMDPTTPLTAADIVNTYDEAALADILRRYGEERFARRIAAGIVRRRAK 244 Query: 183 APFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 PF +T +L +L+ + + ++ HPA R+FQALRI VN+E+E L + +A AL Sbjct: 245 TPFTSTAELVALLYQAIPAPARRVGGHPAKRTFQALRIAVNDELESLRTAVPAALDALAI 304 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 GG + V+++ SLEDR+VK+ FA + H F+S+T + ++ Sbjct: 305 GGRIAVLAYQSLEDRIVKRVFAEAVASATPAGLPVELPGHEPRFRSLTHGAERASVAEIE 364 Query: 302 FNRRSRSAKLRAGMRTVERS 321 N RS +LRA R R+ Sbjct: 365 RNPRSTPVRLRALQRVEHRA 384 >gi|269795582|ref|YP_003315037.1| S-adenosyl-methyltransferase MraW [Sanguibacter keddieii DSM 10542] gi|269097767|gb|ACZ22203.1| S-adenosyl-methyltransferase MraW [Sanguibacter keddieii DSM 10542] Length = 346 Score = 336 bits (862), Expect = 3e-90, Method: Composition-based stats. Identities = 114/312 (36%), Positives = 179/312 (57%), Gaps = 10/312 (3%) Query: 15 HTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69 T H+PVLL++ + LL PA PG V +D T G GG++ + + VI +DRDP Sbjct: 21 ETSDRHLPVLLDRCVELLAPALSVPGAVYVDCTLGMGGHTEAILERLPEVRVIGIDRDPQ 80 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFS 126 A+ + + +F+ A + ++ D V ++G V G++ DLGVSS+QID +RGFS Sbjct: 81 ALELAGARLERFGSRFTGVHAVYDEIGDVVAEQGLTGVQGILMDLGVSSLQIDERERGFS 140 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 + + PLDMRM + ++A+DV+N + +DL RIL GEE+ AS+IA +IV +R++ P+ Sbjct: 141 YAQDAPLDMRMDSTASLTAADVLNTYSERDLARILREYGEERFASKIARSIVAKREARPW 200 Query: 186 QTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 + + DL L++ + + + +PA R+FQALRI VN E+E L + L +A +AL GG Sbjct: 201 ERSADLVDLVRACIPAATRKGTGNPAKRTFQALRIEVNGELEVLERALPAAVEALAVGGR 260 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 ++V S+HSLEDRL K+ + + H +T+ + ++ N Sbjct: 261 IVVESYHSLEDRLTKRELGRGAVSSAPHDLPVEPETHKPYLSLLTRGAEEADEAELERNP 320 Query: 305 RSRSAKLRAGMR 316 RS S +LRA R Sbjct: 321 RSASVRLRAAER 332 >gi|332836127|ref|XP_003313021.1| PREDICTED: methyltransferase like 15 isoform 1 [Pan troglodytes] Length = 407 Score = 336 bits (862), Expect = 3e-90, Method: Composition-based stats. Identities = 130/335 (38%), Positives = 185/335 (55%), Gaps = 38/335 (11%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H+PV++++V+ L+P G++ LD TFG+GG++++ + S+ + ALDRDP A + + Sbjct: 72 HIPVMVDEVVHCLSPQKGQIFLDMTFGSGGHTKAILQKESDIVLYALDRDPTAYALAEHL 131 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 Y +Q FSQ + + GV DGV+ DLG SSMQ+D +RGFS +K GP Sbjct: 132 SELYPKQIRAMLGQFSQAEALLMKAGVQPGTFDGVLMDLGCSSMQLDTPERGFSLRKDGP 191 Query: 133 LDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM +A+DVVN + + L IL GEEK A +IA AIV+ R P T Sbjct: 192 LDMRMDGGRYPDMPTAADVVNALDQQALASILRTYGEEKHAKKIASAIVQARSIYPITRT 251 Query: 189 QDLSSLIQKTVYFSK--------NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 Q L+ ++ S H AT++FQALRIFVNNE+ EL GL++A+K L+ Sbjct: 252 QQLAGIVAGAFPPSAVYTRKDLLQRSTHIATKTFQALRIFVNNELNELYTGLKTAQKFLR 311 Query: 241 AGGLLIVVSFHSLEDRLVKKFF-------------------ASRSGKVMAVRHMIPSNAH 281 GG L+ +SFHSLEDR+VK+F S+ G + Sbjct: 312 PGGRLVALSFHSLEDRIVKRFLLGISMTERFNLSVRQQVMKTSQLGSDHENTEEVSMRRA 371 Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 P +++ I KKV+ P +DV N R RSAKLRA ++ Sbjct: 372 PLMWELIHKKVLSPQDQDVQDNPRGRSAKLRAAIK 406 >gi|27904707|ref|NP_777833.1| hypothetical protein bbp206 [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|29839463|sp|P59522|RSMH_BUCBP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|27904104|gb|AAO26938.1| hypothetical protein bbp_206 [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 315 Score = 336 bits (862), Expect = 3e-90, Method: Composition-based stats. Identities = 107/311 (34%), Positives = 162/311 (52%), Gaps = 18/311 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQE 76 H PVLL + I L+ + +DATFG GG+S+ K + ++D+DP+A+ + Sbjct: 7 HTPVLLNETIQNLDIKNDGIYIDATFGYGGHSKEILKHLGKNGKLYSIDQDPYAIKIANK 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 D +F++ FS + Y V+G++ DLG+SSMQI+ +RGFSF GP Sbjct: 67 LKND--TRFNIIHGKFSNILKYSNKNKIRGKVNGILLDLGMSSMQINNPNRGFSFISDGP 124 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ + GI A + + N+ L +L GEE + +IA+ I+ + T +L Sbjct: 125 LDMRMNPNTGIPAYMWLKKTNLTTLYHVLKKYGEEPFSKKIAYNIIAYNKKKTITRTLEL 184 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 S +I ++ K + HPA R FQA+RI++N+EI EL Q L L GG L+++SFH Sbjct: 185 SKIITNSIPIKKYRK-HPARRVFQAIRIYINHEIYELQQALEHVLNILIPGGKLLILSFH 243 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNRRS 306 SLEDR VKKF S + + + ITK + P+ ++ N R+ Sbjct: 244 SLEDRTVKKFMIKYSKPPFVPPGLAITETQLKSLANKQLKIITK--IFPSTIEIRKNPRA 301 Query: 307 RSAKLRAGMRT 317 SA LR + Sbjct: 302 HSAILRVAQKN 312 >gi|217425690|ref|ZP_03457180.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 576] gi|217391278|gb|EEC31310.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 576] Length = 313 Score = 336 bits (862), Expect = 3e-90, Method: Composition-based stats. Identities = 111/312 (35%), Positives = 173/312 (55%), Gaps = 19/312 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H VLL++ + L P V +D TFG GG+SR+ +IA D+DP A+ + Sbjct: 7 HRTVLLDEAVDALVTRPDGVYVDGTFGRGGHSRAVLARLGDAGRLIAFDKDPRAIETAES 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +F + +F+ ++ + +G V GV+ DLGVSS Q+D RGFSF+ +GPL Sbjct: 67 I---EDARFEIVHDSFAAMKGALDARGIGRVSGVLLDLGVSSPQVDDPARGFSFRANGPL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS----APFQTT 188 DMRM + G SA++ + +A+V++LT ++ GEE+ A +IA AIV RR P +T Sbjct: 124 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRLGPLDST 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ ++ V + PATR+FQA+RI VN E+ +L L +A L+ GG L+V+ Sbjct: 184 GELAQIVGHVVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLEAALSLLEQGGRLVVI 242 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 SFHSLEDR+VK+F + + R + ++ + + + + P +VA N R+ Sbjct: 243 SFHSLEDRIVKRFLQAHASAPAVDRRLPIRAADLPRPPLKLLGR--MFPNDAEVAANPRA 300 Query: 307 RSAKLRAGMRTV 318 RSA +R R Sbjct: 301 RSAVMRIAERVA 312 >gi|290969165|ref|ZP_06560690.1| S-adenosyl-methyltransferase MraW [Megasphaera genomosp. type_1 str. 28L] gi|290780671|gb|EFD93274.1| S-adenosyl-methyltransferase MraW [Megasphaera genomosp. type_1 str. 28L] Length = 310 Score = 336 bits (862), Expect = 3e-90, Method: Composition-based stats. Identities = 112/306 (36%), Positives = 169/306 (55%), Gaps = 8/306 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQ 75 HV VL E+ +A + + +D T G GG++ + + + VI LDRD A+ Sbjct: 4 HHVSVLREETVAAVLGPKNGIYVDCTLGGGGHAATLAAQLQEEALVIGLDRDRDALRAAA 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 ++ + L Q F L D + + VDG++FDLGVS Q+D +RGFS+ + GP Sbjct: 64 ARLQGVPCRTRLVQRNFQYLADVLQELHLPYVDGIMFDLGVSGYQLDTPERGFSYMQDGP 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + AS VVN + + L ++ GEE+ A RIA IV+ R+ PF T +L Sbjct: 124 LDMRMDQRCAVPASTVVNTYSEEALYSLIKAYGEERWAKRIAAFIVRARRQKPFSRTAEL 183 Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I++ + ++ + HPA R+FQALRI VNNE+ L L +A + LK GG + V++F Sbjct: 184 VYVIKQAIPAGARRDGPHPAKRTFQALRIEVNNELGILHDALTTAVQHLKPGGKIGVITF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDR+ K+ F + + + H + ++VV P+ ++VA N R+RSAK Sbjct: 244 HSLEDRITKQTFKELATDCICPPDLPVCTCHHRASIRVRRQVVTPSPQEVADNPRARSAK 303 Query: 311 LRAGMR 316 LR R Sbjct: 304 LRVAER 309 >gi|238809925|dbj|BAH69715.1| hypothetical protein [Mycoplasma fermentans PG18] Length = 320 Score = 336 bits (862), Expect = 3e-90, Method: Composition-based stats. Identities = 108/317 (34%), Positives = 161/317 (50%), Gaps = 16/317 (5%) Query: 7 KTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIAL 64 K + ++ H VLL++ I LN P + +D T G GG+S K +IA Sbjct: 11 KFLKEVVNKMENQHFSVLLQESIDALNIKPDGIYVDLTLGMGGHSSEILKRLDTGRLIAF 70 Query: 65 DRDPFAVSCGQETMRDYKE-QFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDC 120 D+D FA+ ++ + K F L + F ++ + VDG++ DLG+SS Q+D Sbjct: 71 DKDTFAIEESRKRLSQIKSTNFQLIHSDFKNIKSELDKLNISQVDGIIADLGISSPQVDN 130 Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS+ K+ LDMRM S + A VVN + L ++L E K A ++A AI+ + Sbjct: 131 DERGFSYNKNARLDMRMDQSQKLDAYYVVNNYSESQLEQLLRNYAEVKLARQVAKAIISK 190 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 R P TT +L+ +++ +P FQA+RI VNNE + L Q L+ A + L Sbjct: 191 R---PITTTLELAQVVRDAYPAKLVKLKNPNKAVFQAIRIEVNNEFDSLKQMLQDAIELL 247 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 K L V++FHSLED +VK FF S + + I V KV +PT + Sbjct: 248 KPNTSLAVITFHSLEDSIVKHFFGSLIKSKLPAKMPINEEKQYKV------KVFLPTNNE 301 Query: 300 VAFNRRSRSAKLRAGMR 316 + N+RSRSAKLR + Sbjct: 302 LELNKRSRSAKLRVLKK 318 >gi|167626453|ref|YP_001676953.1| S-adenosyl-methyltransferase MraW [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|254813209|sp|B0TZ13|RSMH_FRAP2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|167596454|gb|ABZ86452.1| S-adenosylmethionine-dependent methyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 308 Score = 336 bits (862), Expect = 3e-90, Method: Composition-based stats. Identities = 118/309 (38%), Positives = 173/309 (55%), Gaps = 16/309 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76 H VLL++ IA LN P + +DATFG GG+S++ +IA D+D A+ Sbjct: 4 MHFSVLLQESIADLNINPEGIYIDATFGRGGHSKAILDKLTSGRLIAFDKDLDAIDYATH 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 ++ + F + A+F+ + DY VDG++ DLGVSS Q+D +RGFSF GP Sbjct: 64 NFQN--DNFEMVHASFTYIYDYCLQHNLLGRVDGIIMDLGVSSPQLDNANRGFSFTHDGP 121 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTTQD 190 LDMRM S G++AS + + +V +LT I + GEE+ A +IA I ++ TT Sbjct: 122 LDMRMDISKGLTASQALEELSVDELTYIFKVYGEERFAKKIALRIKGYIAENGSITTTHQ 181 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ LI+ T+ K + +PATR FQALRI+VN+E+++L L S +K GG + +SF Sbjct: 182 LAELIRATI--GKREKKNPATRCFQALRIYVNDELKDLEILLESILDVIKKGGRVAAISF 239 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH---MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 HSLEDR+VK+ F S M+P + + ITKK Q++++ N RSR Sbjct: 240 HSLEDRIVKQKFTSLINPKQETNRIAKMLPQDNSQVKMKWITKKA-KANQDELSQNVRSR 298 Query: 308 SAKLRAGMR 316 SA LR + Sbjct: 299 SAILRVVEK 307 >gi|326333502|ref|ZP_08199743.1| S-adenosyl-methyltransferase MraW [Nocardioidaceae bacterium Broad-1] gi|325948702|gb|EGD40801.1| S-adenosyl-methyltransferase MraW [Nocardioidaceae bacterium Broad-1] Length = 336 Score = 336 bits (862), Expect = 3e-90, Method: Composition-based stats. Identities = 122/322 (37%), Positives = 189/322 (58%), Gaps = 9/322 (2%) Query: 16 TIGDHVPVLLEKVIALLNPA--PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAV 71 T HVPV+L++++ LL PA G V++D T G GG++ + + GS VI +DRD +A+ Sbjct: 7 TNQKHVPVMLDRIVDLLAPALADGGVLVDCTTGHGGHTEAVLERIPGSRVIGIDRDTYAL 66 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQ 128 E + + ++++ A + ++ D V ++G+D V+FDLGVSSMQ+D +RGF++ Sbjct: 67 GIAGERLARFGDRWTGVHAVYDEILDVVAEQGLDEVQAVLFDLGVSSMQLDQRERGFAYA 126 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + PLDMRM + G +A+DV+N + DLTRIL GEEK A +IAHA+VKRR+ PF T Sbjct: 127 EDAPLDMRMDATRGQTAADVLNTYSAADLTRILRDYGEEKFAKKIAHAVVKRREKQPFTT 186 Query: 188 TQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 + L L+ + ++ HPA R+FQALR+ VN+E+ L L ++ +A+ GG ++ Sbjct: 187 SGPLVELLYAEIPAPARRTGGHPAKRTFQALRMEVNDELGALRTALPASLEAVGVGGRVV 246 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V S+HSLEDRL K+ FA + + F+ +T+ T+ ++ N R+ Sbjct: 247 VESYHSLEDRLTKRAFAEATKLDVPPDLPFVPPDAEPSFRLLTRGAEQATEAEIEENPRA 306 Query: 307 RSAKLRAGMRTVERSIEDDSFV 328 S +LRA R RS D Sbjct: 307 ASVRLRAVERVKPRSNPRDKTA 328 >gi|268318248|ref|YP_003291967.1| S-adenosyl-methyltransferase MraW [Rhodothermus marinus DSM 4252] gi|262335782|gb|ACY49579.1| S-adenosyl-methyltransferase MraW [Rhodothermus marinus DSM 4252] Length = 327 Score = 336 bits (862), Expect = 3e-90, Method: Composition-based stats. Identities = 116/330 (35%), Positives = 183/330 (55%), Gaps = 18/330 (5%) Query: 1 MESKSCKTMS-SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG- 58 M +S T + +A + HVPVL + V+ L P +DAT G GG++ + Sbjct: 1 MSERSAHTDTGAAGPYGSPYHVPVLWKAVVEGLVTDPAGCYVDATIGGGGHAAALLDALA 60 Query: 59 --SNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDL 111 VI +DRDP A+ + + D + L Q F+ L+ + GV DG++ DL Sbjct: 61 PEGRVIGIDRDPEALEAVRRRLSDAIEAGRLQLVQGNFADLEAILDRLGVAQIDGLLLDL 120 Query: 112 GVSSMQIDCGDRGFSFQKSGPLDMRMSCS--GISASDVVNQANVKDLTRILGILGEEKQA 169 GVSS Q+D RGFSFQ GPLDMRM + G +A+ ++ + + +L +L GEE +A Sbjct: 121 GVSSHQLDEALRGFSFQAEGPLDMRMDPTSPGPTAAQLLERWSEYELAEVLRRYGEEPRA 180 Query: 170 SRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELA 229 ++A AI + R P +TT +L+ ++++ V + + R FQALRI VN+E++ L Sbjct: 181 RKLARAICRAR---PIRTTAELAEVVRREVSPKEATK--TLARVFQALRIAVNDELQALE 235 Query: 230 QGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT 289 + L +A + ++ GG L+V+S+HSLEDR VK+F + K VR P ++ +T Sbjct: 236 RALEAATRRVRPGGRLVVLSYHSLEDRRVKRFLRYGNLKGEPVRDFYGRLIAP--WRPLT 293 Query: 290 KKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319 ++ + P+ ++VA N R+RSA+LR R E Sbjct: 294 RRAIRPSDDEVAANPRARSARLRIAERVAE 323 >gi|226360238|ref|YP_002778016.1| S-adenosyl-methyltransferase MraW [Rhodococcus opacus B4] gi|262825479|sp|C1AU63|RSMH_RHOOB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|226238723|dbj|BAH49071.1| methyltransferase MraW [Rhodococcus opacus B4] Length = 338 Score = 336 bits (862), Expect = 4e-90, Method: Composition-based stats. Identities = 113/322 (35%), Positives = 175/322 (54%), Gaps = 18/322 (5%) Query: 20 HVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69 H+PVLL + LL PA G V++DAT G GG+S F + ++ALDRDP Sbjct: 17 HIPVLLHRADELLGPALTANDPHGGGAVMIDATLGLGGHSEHFLRTYPQLRLVALDRDPH 76 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSSMQIDCGDR 123 A+ + + ++ + + ++D + G V G++FDLGVSSMQ+D DR Sbjct: 77 ALEIAGGRLAPFADRITFVHTRYDGIEDALTQAGLSPRESVHGILFDLGVSSMQLDESDR 136 Query: 124 GFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GF++ PLDMRM + GI+A++V+N + DL RIL GEE+ A +IA +V++R Sbjct: 137 GFAYSIDAPLDMRMDPTTGITAAEVLNTYSHGDLARILSTYGEERFAGKIASEVVRQRAK 196 Query: 183 APFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 PF T+ L L+ +T+ + + HPA R+FQALR+ VN E++ L + +A AL Sbjct: 197 EPFTTSAALVELLYRTIPAATRRTGGHPAKRTFQALRVEVNGELDSLRAAVPAALDALTV 256 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 GG ++ +S+ SLEDR+VK+ RS + F+ +T+ +++++ Sbjct: 257 GGRVVFMSYQSLEDRVVKQEITPRSKSKSPEGLPVELPGMGPEFRILTRGAERASEQEIE 316 Query: 302 FNRRSRSAKLRAGMRTVERSIE 323 N RS +LRA R RS Sbjct: 317 ENPRSAPVRLRAAERIARRSAA 338 >gi|160872354|ref|ZP_02062486.1| S-adenosyl-methyltransferase MraW [Rickettsiella grylli] gi|159121153|gb|EDP46491.1| S-adenosyl-methyltransferase MraW [Rickettsiella grylli] Length = 312 Score = 335 bits (861), Expect = 4e-90, Method: Composition-based stats. Identities = 117/309 (37%), Positives = 182/309 (58%), Gaps = 13/309 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H PVLL +VI L + +DATFG GG++ + IA+D+DP A++ G + Sbjct: 7 HQPVLLTEVIENLVLDKDGIYVDATFGRGGHAGQILQRLSDKGRCIAIDKDPAAMAFGIQ 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + ++F ++Q +FSQL+ +GV G++FDLGVSS Q++ +RGFSF + GP Sbjct: 67 QW-GHDKRFKIYQGSFSQLKTMAEREGVINKVSGILFDLGVSSPQLEKAERGFSFLREGP 125 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM +GISA++ + A K++ ++L GEE+ A RIA AIV+ ++ P TT L Sbjct: 126 LDMRMDPLTGISAAEWLAHAKEKEIVKVLKNYGEERYAKRIARAIVEEQKLRPIVTTVQL 185 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +++++ + + HPATR+FQA+RI +NNE+E+L L + LK GG L+V+SFH Sbjct: 186 ANVVKLA-HPHWDRFKHPATRTFQAIRIQINNELEDLNVSLGQSIDVLKQGGRLLVISFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK+F + + + ++ +P+ + I + V P + N RSRSA Sbjct: 245 SLEDRIVKRFIHQHAHEAVELKKLPFMPAEWKRPRLKKIGRG-VKPDAYAIKTNPRSRSA 303 Query: 310 KLRAGMRTV 318 LR + Sbjct: 304 LLRIAEKIA 312 >gi|110004576|emb|CAK98913.1| probable s-adenosyl-methyltransferase mraw protein [Spiroplasma citri] Length = 313 Score = 335 bits (861), Expect = 4e-90, Method: Composition-based stats. Identities = 108/309 (34%), Positives = 164/309 (53%), Gaps = 10/309 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++ IA LN + +D T G G+S K N + ++D A+ ++ Sbjct: 4 KHQTVLLQEAIAGLNILNNGIYVDCTLGRAGHSLEILKHLPNGKLYCFEQDEAAIIASKQ 63 Query: 77 TMRDYK-EQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +++ K + + + F L + + V+G+++DLGVSS Q+D +RGFS++ Sbjct: 64 ILQESKYHNYEIIKNNFVNLAAELQVRQVKAVNGILYDLGVSSPQLDDDNRGFSYRYDSL 123 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ ++A +VN + + L ++ GEE A IA IV R + TT L Sbjct: 124 LDMRMNQKQELTAKIIVNTYSQEALAKLFQDYGEEPFAKVIAKNIVIARNTQEIVTTFHL 183 Query: 192 SSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+K++ + HPA R FQALRI VN E+ L + L A L G L+V+SF Sbjct: 184 VEIIKKSLPQKILKKAKHPAKRVFQALRIEVNQELFVLQESLLQATTLLAVHGRLVVISF 243 Query: 251 HSLEDRLVKKFFASRSGKV-MAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRS 308 HSLEDR+VKK+F S + + +P +H + +Q I KK +VP+ + A N RS S Sbjct: 244 HSLEDRIVKKYFQSLTKDPNYEINQQLPVISHFESNYQIIIKKAIVPSGTEQARNHRSTS 303 Query: 309 AKLRAGMRT 317 AKLR R Sbjct: 304 AKLRILERV 312 >gi|126729243|ref|ZP_01745057.1| S-adenosyl-methyltransferase MraW [Sagittula stellata E-37] gi|126710233|gb|EBA09285.1| S-adenosyl-methyltransferase MraW [Sagittula stellata E-37] Length = 330 Score = 335 bits (861), Expect = 4e-90, Method: Composition-based stats. Identities = 139/328 (42%), Positives = 195/328 (59%), Gaps = 13/328 (3%) Query: 9 MSSAIH-HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDR 66 M++A HVPVLL ++ + P V +D TFGAGGY+R + G+ VI +DR Sbjct: 1 MAAADRIQGEAPHVPVLLAPLLREVAPVR-GVWIDGTFGAGGYARGLVEAGAERVIGIDR 59 Query: 67 DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126 DP A + D+ SL + F + DGVV DLGVSSMQ+D +RGFS Sbjct: 60 DPLAHEMAAAWLDDWPA-ISLVRENFCNMDKVAD--SADGVVLDLGVSSMQLDLAERGFS 116 Query: 127 FQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 F + GPLDMRM +G +A+D+VN + +L +L + GEE+Q+ RIA IV+ R PF Sbjct: 117 FMRDGPLDMRMGQAGPTAADLVNDLSESELADVLYVYGEERQSRRIARRIVEHR---PFL 173 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 TT +L+ LI++T+ +K + H ATRSFQALRI VN E E L QGL +AE+ LK GG+L Sbjct: 174 TTLELAGLIERTIGRTKPGQAHAATRSFQALRIAVNGEYEALWQGLMAAERVLKPGGMLA 233 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 VV+FHS+EDR+VK+F + V R+ + A F+ +T+K V P ++++ N R Sbjct: 234 VVTFHSVEDRMVKRFLQLHGDRKRHVNRYATETPEAEAPFEIVTRKAVGPDKDELTANPR 293 Query: 306 SRSAKLRAGMRT---VERSIEDDSFVHL 330 +RSAKLR RT E D+ + + Sbjct: 294 ARSAKLRVARRTDLPAEAVAADEIAMPM 321 >gi|254994991|ref|ZP_05277181.1| S-adenosyl-methyltransferase MraW [Anaplasma marginale str. Mississippi] Length = 291 Score = 335 bits (861), Expect = 4e-90, Method: Composition-based stats. Identities = 127/304 (41%), Positives = 175/304 (57%), Gaps = 20/304 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV-IALDRDPFAVSCGQETM 78 H PVLL +V+ L+P G V +DATFG GGYSR + V A+D+D E + Sbjct: 3 HKPVLLNEVVEALSPKDGSVYVDATFGGGGYSRRILETAQCVVYAIDQDVVVKKYFDELL 62 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + + + +L + FS+L++ V GVD GVVFDLG S+MQ+ RGFSF SG LDM Sbjct: 63 QSFPGRLNLAISRFSKLREVVLSFGVDKVDGVVFDLGTSAMQLADASRGFSFMNSGSLDM 122 Query: 136 RMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM S + A+ VN K++ ++ G E+ + R+A AI+ R+ T DL+++ Sbjct: 123 RMCSSALRDAAMFVNTVPEKEMADVIYQYGGERYSRRVARAIIDARRKCRINNTGDLATI 182 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 I+ V S+ + I PATR+FQA+RI+VNNE+EEL GL +A + LK GG ++V SFHSLE Sbjct: 183 IRSAVPRSRVHPIDPATRTFQAIRIWVNNELEELQAGLEAAAEVLKIGGKILVTSFHSLE 242 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 DR+VK F S F I KK ++PT E++ N RSRS KLRA Sbjct: 243 DRVVKHKFRSLCDMG---------------FSLINKKAIMPTDEEIKNNPRSRSGKLRAI 287 Query: 315 MRTV 318 R Sbjct: 288 ARVE 291 >gi|222475152|ref|YP_002563568.1| S-adenosyl-methyltransferase (mraW) [Anaplasma marginale str. Florida] gi|255003134|ref|ZP_05278098.1| S-adenosyl-methyltransferase MraW [Anaplasma marginale str. Puerto Rico] gi|255004260|ref|ZP_05279061.1| S-adenosyl-methyltransferase MraW [Anaplasma marginale str. Virginia] gi|254813206|sp|B9KIK0|RSMH_ANAMF RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|222419289|gb|ACM49312.1| S-adenosyl-methyltransferase (mraW) [Anaplasma marginale str. Florida] Length = 291 Score = 335 bits (860), Expect = 5e-90, Method: Composition-based stats. Identities = 128/304 (42%), Positives = 175/304 (57%), Gaps = 20/304 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV-IALDRDPFAVSCGQETM 78 H PVLL +V+ L+P G V +DATFG GGYSR + V A+D+D E + Sbjct: 3 HKPVLLNEVVEALSPKDGSVYVDATFGGGGYSRRILETAQCVVYAIDQDVVVKKYFDELL 62 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + + + +L + FS+L++ V GVD GVVFDLG S+MQ+ RGFSF SG LDM Sbjct: 63 QSFPGRLNLAISRFSKLREVVLSFGVDKVDGVVFDLGTSAMQLADASRGFSFMNSGSLDM 122 Query: 136 RMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM S + A+ VN K++ ++ G E+ + R+A AI+ R+ T DL+++ Sbjct: 123 RMCSSALRDAAMFVNTVPEKEMADVIYQYGGERYSRRVARAIIDARRKCRINNTGDLATI 182 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 I+ V S+ + I PATR+FQA+RI+VNNE+EEL GL +A + LK GG ++V SFHSLE Sbjct: 183 IRSAVPRSRVHPIDPATRTFQAIRIWVNNELEELQAGLEAAAEVLKIGGKILVTSFHSLE 242 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 DR+VK F S F I KK ++PT E+V N RSRS KLRA Sbjct: 243 DRVVKHKFRSLCDMG---------------FSLINKKAIMPTDEEVKNNPRSRSGKLRAI 287 Query: 315 MRTV 318 R Sbjct: 288 ARVE 291 >gi|76579862|gb|ABA49337.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 1710b] Length = 413 Score = 335 bits (860), Expect = 5e-90, Method: Composition-based stats. Identities = 111/312 (35%), Positives = 173/312 (55%), Gaps = 19/312 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H VLL++ + L P V +D TFG GG+SR+ +IA D+DP A+ + Sbjct: 107 HRTVLLDEAVDALVTRPDGVYVDGTFGRGGHSRAVLARLGDAGRLIAFDKDPRAIETAES 166 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +F + +F+ ++ + +GV GV+ DLGVSS Q+D RGFSF+ +GPL Sbjct: 167 I---EDARFEIVHDSFAAMKGALDARGVGRVSGVLLDLGVSSPQVDDPARGFSFRANGPL 223 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS----APFQTT 188 DMRM + G SA++ + +A+V++LT ++ GEE+ A +IA AIV RR P +T Sbjct: 224 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRLGPLDST 283 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ ++ V + PATR+FQA+RI VN E+ +L L +A L+ GG L+V+ Sbjct: 284 GELAQIVGHVVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLEAALSLLEQGGRLVVI 342 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 SFHSLEDR+VK+F + + R + ++ + + + + P +VA N R+ Sbjct: 343 SFHSLEDRIVKRFLQAHASAPAVDRRLPIRAADLPRPPLKLLGR--MFPNDAEVAANPRA 400 Query: 307 RSAKLRAGMRTV 318 RSA +R R Sbjct: 401 RSAVMRIAERVA 412 >gi|152990774|ref|YP_001356496.1| S-adenosyl-methyltransferase MraW [Nitratiruptor sp. SB155-2] gi|262824663|sp|A6Q3T0|RSMH_NITSB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|151422635|dbj|BAF70139.1| S-adenosyl-methyltransferase MraW [Nitratiruptor sp. SB155-2] Length = 302 Score = 335 bits (860), Expect = 5e-90, Method: Composition-based stats. Identities = 104/304 (34%), Positives = 168/304 (55%), Gaps = 13/304 (4%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQ 75 H PVLL +V+ I+DAT G GG+S + K ++ + +D+D A++ + Sbjct: 3 APHKPVLLNEVLESFKDRK-GTIVDATLGYGGHSEALLKSNPDIKIVGIDQDSEAIAFSK 61 Query: 76 ETMRDYKEQFSLFQATFSQ-LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + + Y ++ + Q F+ ++D + V GV+ D+GVSS+Q+D DRGFS LD Sbjct: 62 QRLASYGDRVQIIQGRFADVIEDILQTHDVQGVLADIGVSSLQLDKKDRGFSIHSEN-LD 120 Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM + +SA VVN + ++L RI GE + + ++A AI+ R P Q+ L+ Sbjct: 121 MRMDQNAELSAYHVVNTYDEEELKRIFKEYGEIRHSGKLAKAIIHNR---PIQSATQLAE 177 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 + QK + KN R+HPAT FQA+RI VN E+++L L + E+ G + +++FHSL Sbjct: 178 IAQKILP--KNKRVHPATTLFQAIRIEVNKELDQLKGLLDALERHKPKGAKVAIITFHSL 235 Query: 254 EDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 EDR+VK+ F + + A+ A+ +TKK +V + +++ N R+RSAKL Sbjct: 236 EDRIVKQHFKEWAKSCICPPEAMRCTCGANHALGNIVTKKPIVASIDELEENPRARSAKL 295 Query: 312 RAGM 315 R Sbjct: 296 RVFQ 299 >gi|220912331|ref|YP_002487640.1| S-adenosyl-methyltransferase MraW [Arthrobacter chlorophenolicus A6] gi|263447791|sp|B8HGW2|RSMH_ARTCA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|219859209|gb|ACL39551.1| S-adenosyl-methyltransferase MraW [Arthrobacter chlorophenolicus A6] Length = 330 Score = 335 bits (860), Expect = 6e-90, Method: Composition-based stats. Identities = 114/311 (36%), Positives = 171/311 (54%), Gaps = 15/311 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGK--------VILDATFGAGGYSRSFCKMGS- 59 M+ T HVPVL ++ I LL P +++DAT G GG+S + + Sbjct: 1 MNEQPKPTSERHVPVLRDRCINLLAPGFDAARQQGKAPIVIDATLGMGGHSEAMLQRFPD 60 Query: 60 -NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSS 115 ++I +DRD A++ E + + + L A + ++ + + D GV G++ DLGVSS Sbjct: 61 LHLIGIDRDEEALALAGERLAPFSARTDLVHAVYDEIPEVLADLGVTEISGILMDLGVSS 120 Query: 116 MQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAH 174 +Q+D +RGF++ PLDMRM S G +A+DVVN N ++L RI+ GEEK A RIA+ Sbjct: 121 LQLDERERGFAYSFDAPLDMRMDTSRGQTAADVVNTYNEEELVRIIRKWGEEKFAGRIAN 180 Query: 175 AIVKRRQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLR 233 IV R PF TT +L I+ V + + HPA R+FQALRI VN E++ L + + Sbjct: 181 RIVAARGEKPFTTTGELVEQIRSVVPAGAAKSGGHPAKRTFQALRIEVNEELDVLERAVP 240 Query: 234 SAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV 293 +A AL GG ++V+S+HSLED++VK RS + + H + +TK Sbjct: 241 AAVDALAMGGRIVVMSYHSLEDKIVKSVLQGRSKSSAPLGFPVELEEHKPELKILTKGTE 300 Query: 294 VPTQEDVAFNR 304 VPT ++A N Sbjct: 301 VPTAVEIAENP 311 >gi|311087120|gb|ADP67200.1| S-adenosyl-methyltransferase MraW [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 312 Score = 335 bits (860), Expect = 6e-90, Method: Composition-based stats. Identities = 122/312 (39%), Positives = 187/312 (59%), Gaps = 19/312 (6%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSC 73 I H+PV+ +++I L + +D+TFG GG+S K + ++DRDP A S Sbjct: 4 IFKHIPVMKKELIDSLKIKKNGIYIDSTFGTGGHSNEILKKLGQSGRLYSIDRDPIAFSI 63 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQK 129 G + +F + FS+L D+ ++ V+G++FDLGVSS+QID RGFSF+ Sbjct: 64 GSKI---KDSRFHIINENFSKLLDFAKNEKIIGKVNGIIFDLGVSSIQIDDYRRGFSFKN 120 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM+ + GISAS+ + ++NVK+++ +L GEE+ + +IA+AI +R Q +T Sbjct: 121 DGPLDMRMNPNYGISASEWLFESNVKEISFVLKNFGEERFSRKIAYAIKRRSQIKKITST 180 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+++I+KT+ KN HPA RSFQA+RI++N E+EE+ + L S K LK GG + ++ Sbjct: 181 LELANIIKKTIPT-KNKFKHPARRSFQAIRIYINQELEEIQKALESTLKILKPGGRISII 239 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFN 303 SFHSLEDRLVKKF S K + M + + I + ++PTQ ++ N Sbjct: 240 SFHSLEDRLVKKFMIKNSTKAIIPYGMPITEEQLNRLTTCKLKIINR--ILPTQNEINNN 297 Query: 304 RRSRSAKLRAGM 315 R+RS+ LR Sbjct: 298 PRARSSVLRIAE 309 >gi|110598571|ref|ZP_01386839.1| methyltransferase [Chlorobium ferrooxidans DSM 13031] gi|110339805|gb|EAT58312.1| methyltransferase [Chlorobium ferrooxidans DSM 13031] Length = 329 Score = 335 bits (860), Expect = 6e-90, Method: Composition-based stats. Identities = 109/319 (34%), Positives = 179/319 (56%), Gaps = 21/319 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--------VIALDRDPFAV 71 HVPVL ++++A L P V +D T G GG+S + + +I +D+D A+ Sbjct: 7 HVPVLADEIVAFLVQKP-GVYVDGTLGGGGHSLAILRALEKAGYLESSLLIGIDQDDAAL 65 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPD--------KGVDGVVFDLGVSSMQIDCGDR 123 +ET+R+++ L + F ++ + + V G++ DLGVSS QID +R Sbjct: 66 RKAEETLREFRTNSVLVKGNFEEISGVIQRVCSERERPRKVSGILLDLGVSSFQIDSAER 125 Query: 124 GFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GFS+ ++GPLDMRM SG SA+D+VN + ++L +I GEE ++ I+ AIV RQ Sbjct: 126 GFSYLRNGPLDMRMDSSGQRSAADIVNTCDERELAQIFYRYGEEPRSRAISRAIVGYRQK 185 Query: 183 -APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 P TT++L+ +I + + + +N I +R FQALRI VN E++ L + L ++L+ Sbjct: 186 HGPISTTEELAGII-RAIAYGGDNVIKTLSRVFQALRIEVNRELDVLREALCDGIESLED 244 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDV 300 G + V+S+HSLEDR+VK FA + + + + + + +T+K ++ + + Sbjct: 245 HGRMAVISYHSLEDRIVKTVFADSAREDWGPKGVGLREPLKRGAIRLVTRKPLIASSGET 304 Query: 301 AFNRRSRSAKLRAGMRTVE 319 A N R+RSAKLR + E Sbjct: 305 ASNSRARSAKLRVIEKNPE 323 >gi|58038635|ref|YP_190599.1| SAM-dependent methytransferase [Gluconobacter oxydans 621H] gi|68565412|sp|Q5FUK3|RSMH_GLUOX RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|58001049|gb|AAW59943.1| SAM-dependent methytransferase [Gluconobacter oxydans 621H] Length = 323 Score = 335 bits (859), Expect = 6e-90, Method: Composition-based stats. Identities = 127/298 (42%), Positives = 169/298 (56%), Gaps = 5/298 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQETM 78 HVPV+L +V+ L+P G LD TFG GGY+R+ + A+DRDP A+ G Sbjct: 11 HVPVMLHEVLEALSPRAGGRYLDGTFGGGGYARAILNAADCTLDAIDRDPAAIERGNAMA 70 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 + + Q TF ++ +G DG+V DLGVSS QID +RGFSF+ GPLDMRM Sbjct: 71 VQANGRLRMHQGTFGDMEALAGAEGPFDGIVLDLGVSSFQIDQAERGFSFRNDGPLDMRM 130 Query: 138 SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK 197 G SA+D+VN +L IL GEEK + RIA AIV R AP TT L+ +I+ Sbjct: 131 GSDGPSAADLVNTCKEAELADILYRYGEEKLSRRIARAIVAARAEAPITTTGQLAHIIRC 190 Query: 198 TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRL 257 V + N I PATRSFQ LRI VN+E+ EL + L +A + L GG+ +VV+FHSLEDRL Sbjct: 191 CVPRDRAN-IDPATRSFQGLRIAVNDELGELERALEAAPRLLAPGGIFVVVTFHSLEDRL 249 Query: 258 VKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 K+ A +G+ P F + + + T E+ N R+RSA+LRA Sbjct: 250 AKRAMAVLAGRTGNPSRYEPAPLRQEAPAFSLLYSRPLSATDEESRENPRARSARLRA 307 >gi|34556618|ref|NP_906433.1| S-adenosyl-methyltransferase MraW [Wolinella succinogenes DSM 1740] gi|42559439|sp|Q7MSS6|RSMH_WOLSU RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|34482332|emb|CAE09333.1| conserved hypothetical protein CJ0693C [Wolinella succinogenes] Length = 303 Score = 335 bits (859), Expect = 7e-90, Method: Composition-based stats. Identities = 106/302 (35%), Positives = 167/302 (55%), Gaps = 10/302 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76 H+ VL +V+ + P +D T G GG+S + K + I +D+DP A+ Q+ Sbjct: 4 PHLSVLKNEVLEIFAPLSEGYFIDCTLGFGGHSEAILKAHPKLSLIGIDQDPHALEFSQK 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + +K++FS + FS++ + + + G++ D+GVSS+Q+D RGFSF LDMR Sbjct: 64 RLAPFKDRFSFREGRFSEVLPTLKELPIAGILADIGVSSLQLDDSSRGFSFHSE-RLDMR 122 Query: 137 MSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M+ + +SA +VVN L RI GE K++ ++ I + R+ + + LS LI Sbjct: 123 MNPNAQLSALEVVNSYPQDRLERIFKEYGEIKESKKLVSLISEERKKGRITSAEALSRLI 182 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 ++ +F + IHPAT +FQA+RI VN+E+ E+ + L++ + K G + ++SFHSLED Sbjct: 183 ER--HFKRVGNIHPATLAFQAIRIEVNDELGEIGRALQTIGEIAK--GRVSIISFHSLED 238 Query: 256 RLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 RLVK FF S + + Q +TKK +V T E+ N RSRSAK+RA Sbjct: 239 RLVKNFFKEWSNSCLCPPEAFRCTCGNNHEKGQILTKKPLVATPEESKANPRSRSAKMRA 298 Query: 314 GM 315 Sbjct: 299 FE 300 >gi|73542671|ref|YP_297191.1| S-adenosyl-methyltransferase MraW [Ralstonia eutropha JMP134] gi|88909215|sp|Q46WY6|RSMH_RALEJ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|72120084|gb|AAZ62347.1| methyltransferase [Ralstonia eutropha JMP134] Length = 332 Score = 335 bits (859), Expect = 7e-90, Method: Composition-based stats. Identities = 119/335 (35%), Positives = 184/335 (54%), Gaps = 23/335 (6%) Query: 9 MSSAIHHTIG--DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIA 63 MS H VLL++ + L P V +D TFG GG+SR+ ++A Sbjct: 1 MSPTGSPATPALRHRTVLLDEAVEALVWRPDGVYVDGTFGRGGHSRAVLARLGPDGALVA 60 Query: 64 LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGD 122 D+DP A++ +FS+ +F+ + + + +G V GV+ DLG+SS QID Sbjct: 61 FDKDPAAIAEAGTI---QDARFSIEHESFAAMGERLAGRGHVAGVLLDLGISSPQIDEAA 117 Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF+ GPLDMRM + GI+A++ + QA +D+ R++ GEE+ A +IA AIV RR+ Sbjct: 118 RGFSFRFEGPLDMRMDTTRGITAAEWLAQAEEQDIARVIRDYGEERFAVQIAKAIVARRR 177 Query: 182 S----APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 P TT DL++L+ K V + PATR+FQALRI +N E+E+L +GL++A Sbjct: 178 EPGDGGPLATTADLAALVAKAVKT-REKGQDPATRTFQALRIHINQELEDLERGLKAAYD 236 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP------SNAHPAVFQSITKK 291 L+ GG L+V+SFHSLEDR+VK+F A+ + + ++ + + + Sbjct: 237 LLQVGGRLVVISFHSLEDRIVKRFMAAHARPQQDADPALRRAPLRAADLPQPTLRLLGR- 295 Query: 292 VVVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDDS 326 V P ++VA N R+RSA +R + + + Sbjct: 296 -VKPGAQEVADNPRARSAVMRVAEKLAPAASGRGA 329 >gi|291288111|ref|YP_003504927.1| S-adenosyl-methyltransferase MraW [Denitrovibrio acetiphilus DSM 12809] gi|290885271|gb|ADD68971.1| S-adenosyl-methyltransferase MraW [Denitrovibrio acetiphilus DSM 12809] Length = 308 Score = 335 bits (859), Expect = 7e-90, Method: Composition-based stats. Identities = 103/308 (33%), Positives = 167/308 (54%), Gaps = 10/308 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 H+PV++ +V+ L P + LD T G GG+S + + ++ LDRD AV+ + Sbjct: 2 KHIPVMIREVLKYLPVDPDGITLDMTGGGGGHSAAMLEKISLKGRLVILDRDLDAVARLK 61 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQKSGP 132 E + ++ + FS + + G+ V + D GVS + +RGFSF+ GP Sbjct: 62 ERFKG-TPNVTIAHSNFSDFDRVLGELGISSVTSVLADFGVSLYHLKVAERGFSFRSEGP 120 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ +SA+DVVN + ++L+ I+ GEE A IA AI + R+ +TT L Sbjct: 121 LDMRMNQDDTLSAADVVNSYSRENLSSIIKKYGEENFAWNIAGAIERAREVEKIETTTRL 180 Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 + ++ V + I+PAT++FQALRIFVN+E++ + + L E + GG + +SF Sbjct: 181 AEIVASAVPRKAQKPGINPATKTFQALRIFVNSELDSIEEMLGKLENYVDEGGRVAFISF 240 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK F + + + + + F+ IT+K + P ++++ N SRSA Sbjct: 241 HSLEDRIVKDAFREFEKECVCPPELPVCNCSKVRTFRQITRKPLEPREDELEMNPLSRSA 300 Query: 310 KLRAGMRT 317 K+R R Sbjct: 301 KMRVAERV 308 >gi|114777870|ref|ZP_01452801.1| methyltransferase [Mariprofundus ferrooxydans PV-1] gi|114551861|gb|EAU54401.1| methyltransferase [Mariprofundus ferrooxydans PV-1] Length = 331 Score = 335 bits (859), Expect = 7e-90, Method: Composition-based stats. Identities = 114/317 (35%), Positives = 173/317 (54%), Gaps = 12/317 (3%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M++ + ++ +H+PVL + I + P +D TFG GG+SR ++A D Sbjct: 1 MATDVEYS--EHIPVLRDAFIDAIFSDPDGCYVDCTFGRGGHSRQLLARLSEKGRLLAFD 58 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGD 122 RDP AV+ G+E + +F++ A F++L + + +G V G+ FDLGVSS Q+D Sbjct: 59 RDPDAVAAGEE-LAQQDARFAIEHADFARLGEVLDARGWCQVTGIGFDLGVSSPQVDQAQ 117 Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF++ GPLDMRM + G S + + ++L IL G+E+ A RIA AI+K Sbjct: 118 RGFSFRQDGPLDMRMDTTQGQPLSRRLEHVSERELIDILRRFGDERYAQRIARAILKAMH 177 Query: 182 SAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 TT DL + V ++ HPATR+FQALRI+VN+E++++ G+ +A L+ Sbjct: 178 DGALTTTSDLENACFHAVPKQARYGSTHPATRTFQALRIWVNDEMQQIDDGISAAVDHLQ 237 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQED 299 GG L V+SFHS EDR ++ +R + + + KK V P + + Sbjct: 238 PGGRLAVISFHSGEDRRIRDLIEARVHACTCPPQMPVCVCGKKPTMRWLQKKPVRPDEGE 297 Query: 300 VAFNRRSRSAKLRAGMR 316 VA N RSRS+ LR R Sbjct: 298 VAANPRSRSSMLRVAQR 314 >gi|56416788|ref|YP_153862.1| S-adenosyl-methyltransferase MraW [Anaplasma marginale str. St. Maries] gi|68565444|sp|Q5PAS3|RSMH_ANAMM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|56388020|gb|AAV86607.1| S-adenosyl-methyltransferase [Anaplasma marginale str. St. Maries] Length = 291 Score = 335 bits (859), Expect = 7e-90, Method: Composition-based stats. Identities = 128/304 (42%), Positives = 175/304 (57%), Gaps = 20/304 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV-IALDRDPFAVSCGQETM 78 H PVLL +V+ L+P G V +DATFG GGYSR + V A+D+D E + Sbjct: 3 HKPVLLNEVVEALSPKDGSVYVDATFGGGGYSRRILETAQCVVYAIDQDVVVKKYFDELL 62 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + + + +L + FS+L++ V GVD GVVFDLG S+MQ+ RGFSF SG LDM Sbjct: 63 QSFPGRLNLAISRFSKLREVVLSFGVDKVDGVVFDLGTSAMQLADASRGFSFMNSGSLDM 122 Query: 136 RMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM S + A+ VN K++ ++ G E+ + R+A AI+ R+ T DL+++ Sbjct: 123 RMCSSALRDAAMFVNTVPEKEMADVIYQYGGERYSRRVARAIIDARRKCRINNTGDLATI 182 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 I+ V S+ + I PATR+FQA+RI+VNNE+EEL GL +A + LK GG ++V SFHSLE Sbjct: 183 IRSAVPRSRVHPIDPATRTFQAIRIWVNNELEELQAGLETAAEVLKIGGKILVTSFHSLE 242 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 DR+VK F S F I KK ++PT E+V N RSRS KLRA Sbjct: 243 DRVVKHKFRSLCDMG---------------FSLINKKAIMPTDEEVKNNPRSRSGKLRAI 287 Query: 315 MRTV 318 R Sbjct: 288 ARVE 291 >gi|229820904|ref|YP_002882430.1| S-adenosyl-methyltransferase MraW [Beutenbergia cavernae DSM 12333] gi|263447254|sp|C5BW67|RSMH_BEUC1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|229566817|gb|ACQ80668.1| S-adenosyl-methyltransferase MraW [Beutenbergia cavernae DSM 12333] Length = 333 Score = 335 bits (859), Expect = 8e-90, Method: Composition-based stats. Identities = 116/319 (36%), Positives = 175/319 (54%), Gaps = 10/319 (3%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIA 63 MS+ H PVL ++ + LL PA G V++DAT G GG+S + + V+ Sbjct: 1 MSTPDAQAAALHAPVLAQRCVDLLAPALESDGAVLVDATLGMGGHSELVLEQCPHARVLG 60 Query: 64 LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDC 120 +DRDP A+ + + ++F+ A + ++ D V GV+FDLGVSS+Q+D Sbjct: 61 IDRDPRALELATARLARFGQRFTPVHAVYDEIDDVARQHAGGAVQGVLFDLGVSSLQLDD 120 Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 RGF++ + PLDMRM + G +A+D++ A+ +L RIL GEEK A RIA AIV+R Sbjct: 121 AGRGFAYAQDAPLDMRMDPTTGPTAADLLADADEAELRRILRTYGEEKFAPRIAAAIVRR 180 Query: 180 RQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R++AP + + DL +++ + ++ HPA R+FQALRI VN E+E L + L A A Sbjct: 181 REAAPLRRSSDLVEVVRGAIPMSAQRTGGHPAKRTFQALRIAVNRELEVLERALPRAIDA 240 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L GG ++V S+HSLEDRLVK+ A + + + +T Sbjct: 241 LAVGGRIVVESYHSLEDRLVKRELARGATSSAPRHLPVVPEEDQPYLELLTHGAEQADDV 300 Query: 299 DVAFNRRSRSAKLRAGMRT 317 ++A N R+ S +LRA R Sbjct: 301 ELAANPRAASVRLRAARRI 319 >gi|329940950|ref|ZP_08290230.1| SAM-dependent methyltransferase [Streptomyces griseoaurantiacus M045] gi|329300244|gb|EGG44142.1| SAM-dependent methyltransferase [Streptomyces griseoaurantiacus M045] Length = 310 Score = 334 bits (858), Expect = 9e-90, Method: Composition-based stats. Identities = 119/308 (38%), Positives = 180/308 (58%), Gaps = 10/308 (3%) Query: 24 LLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETM 78 +L + + LL P PG V++D T G GG+S + ++ALDRD A+ E + Sbjct: 2 MLHRCLDLLAPALERPGAVVVDCTLGLGGHSEALLARFPEVRLVALDRDKEALRLSAERL 61 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 Y E+ +L A + +L + + G V GV+FDLGVSSMQ+D DRGF++ + PLDM Sbjct: 62 APYGERATLVHAVYDELPEVLDRLGLARVQGVLFDLGVSSMQLDEADRGFAYAQDAPLDM 121 Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM S G SA++V+N +L RIL GEEKQA RI A+V+ R+ PF T+ L + Sbjct: 122 RMDQSTGTSAAEVLNTYPPGELVRILRAYGEEKQAKRIVSAVVREREREPFTTSARLVEV 181 Query: 195 IQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 I+ + +K +PA R+FQALRI VN E+ L + + +A +AL GG + V+++HSL Sbjct: 182 IRDALPQAAKRTGGNPAKRTFQALRIEVNGELTVLERAIPAAVRALDVGGRIAVLAYHSL 241 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 EDRLVK+ FA+ + + + + +T+ +PT+E++A NRR+ A+LR Sbjct: 242 EDRLVKQVFAAGAAGTAPPGLPVVPERYQPRLKLLTRGAELPTEEEIAENRRAAPARLRG 301 Query: 314 GMRTVERS 321 +R E + Sbjct: 302 ALRIREDA 309 >gi|34540382|ref|NP_904861.1| S-adenosyl-methyltransferase MraW [Porphyromonas gingivalis W83] gi|42559440|sp|Q7MWN0|RSMH_PORGI RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|34396695|gb|AAQ65760.1| S-adenosyl-methyltransferase MraW [Porphyromonas gingivalis W83] Length = 311 Score = 334 bits (858), Expect = 9e-90, Method: Composition-based stats. Identities = 100/308 (32%), Positives = 158/308 (51%), Gaps = 17/308 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQE 76 H+PV+L + + L P +D TFG GG+SR+ + D+D A + Sbjct: 11 HIPVMLGECLEGLRIDPDGCYVDVTFGGGGHSRAIVEKLSSKGRLYGFDQDADACRNILQ 70 Query: 77 TMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 E+F+ + F L +++ + GVDG++ DLGVSS D +RGFSF+ PL Sbjct: 71 -----DERFTFVTSNFRYLANFMDYYGEDGVDGILADLGVSSHHFDEEERGFSFRSESPL 125 Query: 134 -DMRMSCSGISASD-VVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS--APFQTTQ 189 DMRM+ + ++N+ + L+ + GE KQA R A +IV R+S QT Sbjct: 126 LDMRMNARAGRNAAAILNEYDASSLSALFYHYGELKQARRFAASIVHYRESLSGGLQTVG 185 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L ++ + + + FQALRI VN+E+ L Q L +A L++GG L+V++ Sbjct: 186 QLLEAVRGLISPREEKK--QLACIFQALRIEVNDELGALQQMLEAALGCLRSGGRLVVMT 243 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 +HSLEDR+VK + K + A + +Q IT+K + + ++++ N RSRSA Sbjct: 244 YHSLEDRMVKNVLRYGTVKAPDEDSLRLYGAPQSPWQQITRKPLTASTKELSDNPRSRSA 303 Query: 310 KLRAGMRT 317 KLR + Sbjct: 304 KLRIAEKI 311 >gi|310823496|ref|YP_003955854.1| s-adenosyl-l-methionine-dependent methyltransferase mraw [Stigmatella aurantiaca DW4/3-1] gi|309396568|gb|ADO74027.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Stigmatella aurantiaca DW4/3-1] Length = 301 Score = 334 bits (858), Expect = 9e-90, Method: Composition-based stats. Identities = 115/302 (38%), Positives = 165/302 (54%), Gaps = 8/302 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H VLL + + LL P GKVILD T G GG++ + G+ VI +DRDP A++ + Sbjct: 5 HQTVLLAEAVQLLQPGVGKVILDGTLGGGGHTEALLARGATVIGVDRDPVALAAATARLG 64 Query: 80 DYKEQFSLFQATFSQLQDYVPDK-GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138 + F F +L D VDGV+ DLGVSS Q+D +RGFSF GPLDMRM Sbjct: 65 GHAH-FQARAGNFGELPRVAADVLPVDGVLVDLGVSSPQLDVAERGFSFNHDGPLDMRMG 123 Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198 G +A++++ Q + ++L RI+ LGEE + IA + + T + + +++ Sbjct: 124 PEGRTAAELIAQEDERELARIIYELGEESFSRPIARELKRALP----TRTLEAAEAVKRA 179 Query: 199 VYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRL 257 V RIH AT++FQALR+ VN E+E L L + + LK GG V++FHSLEDR Sbjct: 180 VPRKAWPKRIHVATKTFQALRMAVNGELEALDALLGALPRLLKVGGRAAVIAFHSLEDRK 239 Query: 258 VKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 VK+ F + G + + P F +TKK V ++++V N RSRSA LRA + Sbjct: 240 VKEAFRNLVGACRCPPGLPVCACGGPGDFAPLTKKAVSASEQEVELNPRSRSAHLRAVEK 299 Query: 317 TV 318 Sbjct: 300 IR 301 >gi|94312067|ref|YP_585277.1| S-adenosyl-methyltransferase MraW [Cupriavidus metallidurans CH34] gi|123259838|sp|Q1LIL8|RSMH_RALME RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|93355919|gb|ABF10008.1| S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Cupriavidus metallidurans CH34] Length = 325 Score = 334 bits (858), Expect = 1e-89, Method: Composition-based stats. Identities = 119/328 (36%), Positives = 187/328 (57%), Gaps = 21/328 (6%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDR 66 + + T H VLL++ + L P +D TFG GG+SR+ ++A D+ Sbjct: 4 TESPGTTTLRHRTVLLDEAVDALVWRPDGAYVDGTFGRGGHSRAVLARLGPAGTLVAFDK 63 Query: 67 DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGF 125 DP A++ +FS+ A+F+++ D + +G V GV+ DLG+SS QID RGF Sbjct: 64 DPAAIAEAGTI---KDARFSIEHASFAEMGDRLAGRGPVAGVLLDLGISSPQIDEAARGF 120 Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-- 182 SF+ GPLDMRM + GI+A++ + QA+ +D+ R++ GEE+ A +IA AIV RR+ Sbjct: 121 SFRFEGPLDMRMDTTRGITAAEWLAQADEQDIARVIRDYGEERFALQIAKAIVARRRESG 180 Query: 183 --APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 TT DL++L+ K V + PATR+FQALRI++N E+E+L +GL++A + L+ Sbjct: 181 DGGALATTSDLAALVAKAVKT-REKGQDPATRTFQALRIYINQELEDLERGLKAAYELLQ 239 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP------SNAHPAVFQSITKKVVV 294 GG L+V+SFHSLEDR+VK+F + + + ++ + + + Sbjct: 240 VGGRLVVISFHSLEDRIVKRFMQAHARPERDADPALRRAPLRAADLPQPTMKLLGR--FK 297 Query: 295 PTQEDVAFNRRSRSAKLRAGMRTVERSI 322 P E+VA N R+RSA +R + E+S Sbjct: 298 PGAEEVAGNPRARSAVMRVAEKLGEQSA 325 >gi|222112157|ref|YP_002554421.1| s-adenosyl-methyltransferase mraw [Acidovorax ebreus TPSY] gi|263447303|sp|B9MFS0|RSMH_ACIET RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|221731601|gb|ACM34421.1| S-adenosyl-methyltransferase MraW [Acidovorax ebreus TPSY] Length = 308 Score = 334 bits (858), Expect = 1e-89, Method: Composition-based stats. Identities = 118/310 (38%), Positives = 174/310 (56%), Gaps = 16/310 (5%) Query: 20 HVPVLLEKVIALL---NPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSC 73 H VLL++ + L AP +D TFG GG+SR + ++A D+D A+ Sbjct: 7 HTTVLLDEAVHALLGDGDAPAGTFVDGTFGRGGHSRLILQRLGPQGRLVAFDKDTEAIQA 66 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 R +FS+ FS L + +P V GV+ DLGVSS QID RGFSF+ GPL Sbjct: 67 A---ARITDARFSIRHQGFSHLGE-LPAASVSGVLLDLGVSSPQIDDPQRGFSFRFDGPL 122 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR-QSAPFQTTQDL 191 DMRM + G S ++ + A + ++ GEE+ A IA AIV RR + P +T +L Sbjct: 123 DMRMDTTRGQSVAEWLADAEAAQIAEVIRDYGEERFAGPIAKAIVARRTERGPISSTAEL 182 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ V + + +PATR+FQALRIF+N E+EEL Q L + + L+ GG L+V+SFH Sbjct: 183 ADIVAGAVKTREPGQ-NPATRTFQALRIFINAELEELQQALEGSLRVLRPGGRLVVISFH 241 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+VK+F A S +V R + P +++ + + P+ ++VA N R+RSA + Sbjct: 242 SLEDRIVKQFIAQHSKEVY-DRRAPFAPPQPMRLKALER--IKPSTDEVAANARARSAVM 298 Query: 312 RAGMRTVERS 321 R RT + Sbjct: 299 RVAERTEVPA 308 >gi|332518989|ref|ZP_08395456.1| S-adenosyl-methyltransferase MraW [Lacinutrix algicola 5H-3-7-4] gi|332044837|gb|EGI81030.1| S-adenosyl-methyltransferase MraW [Lacinutrix algicola 5H-3-7-4] Length = 300 Score = 334 bits (858), Expect = 1e-89, Method: Composition-based stats. Identities = 100/309 (32%), Positives = 165/309 (53%), Gaps = 17/309 (5%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72 + H PVLL + + L+ P V +D TFG GG+S+ K + A D+D A+ Sbjct: 2 EMEYHNPVLLNETVDGLDIKPNGVYVDVTFGGGGHSKEILKRLGEHGKLFAFDQDADALE 61 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQK 129 + +F+L F ++ ++ GV DG++ D GVSS Q D +RGFS + Sbjct: 62 N-----KIDDPRFTLIHENFRYIKRFLRFHGVKEVDGILADFGVSSHQFDVAERGFSTRF 116 Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 + LDMRM+ + +SA VVN+ + + + ++L GE + A +A IV R++ +T+ Sbjct: 117 AADLDMRMNQKNDLSAFHVVNEYDEEQIKQVLLQYGELRAAPAMARLIVDYRKNEVIKTS 176 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L ++++K + N+I + +QA+RI VN EIE L + L + LK G L ++ Sbjct: 177 DQLKTILKKFLSPKHENKI--LAQIYQAIRIEVNQEIEALKEFLSQTPEILKPNGRLSLI 234 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 S+HSLEDRLVK+F + + R + P + + K+++P+ E++ N R+RS Sbjct: 235 SYHSLEDRLVKRFIRNGLFEGEPERDVFGRFEVP--LKKV-GKLIIPSAEEIKINNRARS 291 Query: 309 AKLRAGMRT 317 AKLR + Sbjct: 292 AKLRIAEKI 300 >gi|269958801|ref|YP_003328589.1| S-adenosyl-methyltransferase [Anaplasma centrale str. Israel] gi|269848631|gb|ACZ49275.1| S-adenosyl-methyltransferase [Anaplasma centrale str. Israel] Length = 291 Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats. Identities = 129/304 (42%), Positives = 181/304 (59%), Gaps = 20/304 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQETM 78 H PVLL +V+ L+P GK+ +DATFG GGYSR +M V A+D+D E + Sbjct: 3 HKPVLLNEVMETLSPQDGKIYIDATFGGGGYSRKMLEMARCAVYAIDQDITVKEYFDELL 62 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + + + SL + FS+L++ + G VDG+VFDLG S+MQ+ RGFSF KSG LDM Sbjct: 63 QSFPGRLSLAISKFSRLREVMLSFGINRVDGIVFDLGTSAMQLADPSRGFSFMKSGSLDM 122 Query: 136 RMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM S +A+ VN K++ I+ G E+++ ++A AIV RQ +T+DL+ + Sbjct: 123 RMCSSSQRNAALFVNTVLEKEMADIIYHYGGERRSRKVARAIVDARQKRKINSTEDLAEI 182 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 I+ V S+ + I PATR+FQA+RI+VNNE+EEL GL +A K L+ GG ++V SFHSLE Sbjct: 183 IRSVVPRSRVHPIDPATRTFQAIRIWVNNELEELQAGLEAASKLLRVGGKILVTSFHSLE 242 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 DR+VK+ F S F + KK + PT E++ N RSRS KLRA Sbjct: 243 DRVVKQKFKSLCDMG---------------FSLVNKKAIRPTDEEIRDNPRSRSGKLRAI 287 Query: 315 MRTV 318 +R Sbjct: 288 VRVE 291 >gi|119897167|ref|YP_932380.1| S-adenosyl-methyltransferase MraW [Azoarcus sp. BH72] gi|263446774|sp|A1K3T8|RSMH_AZOSB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|119669580|emb|CAL93493.1| SAM dependent methyltransferase [Azoarcus sp. BH72] Length = 312 Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats. Identities = 119/305 (39%), Positives = 167/305 (54%), Gaps = 12/305 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HV VLL + + L P + +D TFG GG+SR+ G +IA DRDP A++ GQ Sbjct: 7 HVSVLLTEAVDALAIKPEGIYVDGTFGRGGHSRAVLARLGAGGRLIAFDRDPAAIAAGQ- 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + L A FS+ + GV DGV+ DLGVSS Q+D RG SF+ PL Sbjct: 66 --AIADPRLELVHAPFSEFAVVLDRLGVSAVDGVLLDLGVSSPQLDDASRGMSFRFDAPL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S G + ++ + +A+V ++T ++ GEE+ A IA AI R TT L+ Sbjct: 124 DMRMDTSRGRTVAEWLAEASVAEITEVIRDYGEERFAYAIAKAIAAARTGGAIATTGQLA 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++++K V + + HPATRSFQALRIF+N E+EEL L L GG L+V+SFHS Sbjct: 184 AIVEKAVRTREPGQ-HPATRSFQALRIFINQELEELTTVLPDCVARLSEGGRLVVISFHS 242 Query: 253 LEDRLVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK+F + + R + + P + K P + +VA N R+RSA + Sbjct: 243 LEDRIVKRFLRDEARPPQLPSRLPVRAADLPPPRLQLVGKAQRPGEAEVAANPRARSAVM 302 Query: 312 RAGMR 316 R R Sbjct: 303 RVAER 307 >gi|332292526|ref|YP_004431135.1| S-adenosyl-methyltransferase MraW [Krokinobacter diaphorus 4H-3-7-5] gi|332170612|gb|AEE19867.1| S-adenosyl-methyltransferase MraW [Krokinobacter diaphorus 4H-3-7-5] Length = 301 Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats. Identities = 101/309 (32%), Positives = 164/309 (53%), Gaps = 17/309 (5%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAV 71 + + H PVLL++ + LN P V +D TFG GG+SR + D+D A Sbjct: 2 YQMDYHNPVLLKETVDGLNIKPDGVYVDVTFGGGGHSREILSRLGPEGKLYGFDQDVDAQ 61 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQ 128 E E+F+L F ++ ++ GV DG++ D GVSS Q D +RGFS + Sbjct: 62 ENIIE-----DERFTLIPENFRYIKRFMRFHGVKKVDGILGDFGVSSHQFDVAERGFSTR 116 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 LDMRM+ +SA +V+N +DL ++ GE + A ++A IV+ R S +T Sbjct: 117 FESDLDMRMNQKDTLSAYNVINDYEEEDLRQVFWQYGELRNAPKLASTIVQERNSQFIKT 176 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 ++ L ++ + + ++I + +QA+RI VN EIE L + L E+ L GG + + Sbjct: 177 SEHLKKVLAPFLPKHREHKI--LAQIYQAIRIEVNQEIEVLKEFLMQTEQLLDTGGRISL 234 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +S+HSLEDRLVK++ S + + M + P F+ + K+++P +++ N R+R Sbjct: 235 ISYHSLEDRLVKRYIRSGMFEGEPEKDMYGNFEVP--FKKV-GKLIIPDSKEIKLNNRAR 291 Query: 308 SAKLRAGMR 316 SAKLR + Sbjct: 292 SAKLRIAEK 300 >gi|197294245|ref|YP_001798786.1| S-adenosyl-methyltransferase MraW [Candidatus Phytoplasma australiense] gi|262824821|sp|B1V910|RSMH_PHYAS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|171853572|emb|CAM11442.1| S-adenosyl-methyltransferase [Candidatus Phytoplasma australiense] Length = 303 Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats. Identities = 117/306 (38%), Positives = 173/306 (56%), Gaps = 14/306 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H+ VL E+ I+ LN P V +DAT G GG++ S + + + D+D A S Q+ Sbjct: 5 HISVLKEEAISFLNINPNGVYVDATLGQGGHTLSILNHLQDGFLYSFDQDLKACSDIQKK 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + + + FS L+ + + V DG++FDLG+SS QID RGFS+ + PLD Sbjct: 65 LNP-NWPIEIIHSNFSNLKLELAKRNVFQLDGILFDLGISSCQIDDSQRGFSYLHNAPLD 123 Query: 135 MRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MR ++A ++VN + + L I I GEEK+A+ IA I+K R P +T+ DL + Sbjct: 124 MRFDNRQKLTAQEIVNFYSFEKLKNIFHIYGEEKKAALIAKQIIKNR---PLKTSYDLVA 180 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 + T F K ++ H A + FQALRI VN E+E L Q L + + LK G ++V+SFHSL Sbjct: 181 I---TDMFYKYHKGHSAKKIFQALRIEVNQELEVLKQALSQSLELLKKDGSIVVISFHSL 237 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHP-AVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 EDR+VK FF S + I S +P + ITKK +P++ ++ N RS SAKLR Sbjct: 238 EDRIVKHFFKKNSVFEFPKKLPIMSVDYPQPALRIITKKPCIPSEVEMKNNPRSISAKLR 297 Query: 313 AGMRTV 318 A ++ + Sbjct: 298 AAVKNI 303 >gi|134102314|ref|YP_001107975.1| S-adenosyl-methyltransferase MraW [Saccharopolyspora erythraea NRRL 2338] gi|291003724|ref|ZP_06561697.1| S-adenosyl-methyltransferase [Saccharopolyspora erythraea NRRL 2338] gi|262826346|sp|A4FLX5|RSMH_SACEN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|133914937|emb|CAM05050.1| S-adenosyl-methyltransferase [Saccharopolyspora erythraea NRRL 2338] Length = 330 Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats. Identities = 118/310 (38%), Positives = 175/310 (56%), Gaps = 10/310 (3%) Query: 20 HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCG 74 HVPV++E+ + LL P V++DAT G GG+S + + + LDRDP A+ Sbjct: 19 HVPVMMERTLELLAPALSKGPAVVVDATLGMGGHSEALLAAHPELTLVGLDRDPDALRLA 78 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E + + ++ L A + + + + VDG +FDLGVSS+Q+D DRGF++ Sbjct: 79 GERLAPHSDRVHLVHAVYDEWAEALAGLSLSKVDGALFDLGVSSLQLDETDRGFAYAHDA 138 Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM +A+DV+N + +LTR+L GEEK A+RIA AIV+ R APF + Sbjct: 139 PLDMRMDSGAPRTAADVLNTYSAGELTRVLREYGEEKFAARIAAAIVRERAKAPFDRSGR 198 Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L L+ V + + HPA R+FQALRI VN E+E L + L +A +L GG ++V+S Sbjct: 199 LVELLYDAVPAASRRTGGHPAKRTFQALRIEVNAELEVLGRALPAALDSLAVGGRMVVMS 258 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 +HSLEDR+VK+ FA R+ V + H + +T+ + + + A N R+ S Sbjct: 259 YHSLEDRMVKRAFAERAKSKTPVDLPVELPGHGPEIRLLTRGAELASDAETAANPRAASV 318 Query: 310 KLRAGMRTVE 319 +LRA R E Sbjct: 319 RLRAAERIKE 328 >gi|298245975|ref|ZP_06969781.1| S-adenosyl-methyltransferase MraW [Ktedonobacter racemifer DSM 44963] gi|297553456|gb|EFH87321.1| S-adenosyl-methyltransferase MraW [Ktedonobacter racemifer DSM 44963] Length = 320 Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats. Identities = 104/305 (34%), Positives = 158/305 (51%), Gaps = 14/305 (4%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69 + + HV V+LE+V+ L P PG +D T G GG++ + V+ +D D Sbjct: 1 MENEQTRHVSVMLEEVMEYLRPQPGGHYIDGTLGGGGHTSVLLERSAPDGKVLGIDTDSK 60 Query: 70 AVSCGQETMRD--YKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRG 124 A + Q + + + L FS ++ + VDG++ DLG SS Q+D RG Sbjct: 61 AQARVQARLSKEVAEGRLILSHGNFSDMERLAQEAQFTSVDGILLDLGFSSDQMDDPQRG 120 Query: 125 FSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 FSF GPLDMR+S ++A+D+VN ++L I GEE+++ +IA I + RQ Sbjct: 121 FSFSADGPLDMRLSQDLSLTAADLVNNTGEEELADIFWRYGEERRSRQIARRIGRERQKR 180 Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 T L+ + V + K IHPATR FQALRI VN E+E L L L+AGG Sbjct: 181 AITRTSQLAEIAAAGVPY-KYGAIHPATRVFQALRIAVNQELESLETALPQMLSLLQAGG 239 Query: 244 ---LLIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQED 299 +++++FHSLEDR+VK+F + + + H A + +T K +VP +++ Sbjct: 240 KQGRMVIIAFHSLEDRIVKEFLRREARDCLCPPRIPMCICGHKASLRILTNKPIVPGEQE 299 Query: 300 VAFNR 304 VA N Sbjct: 300 VAANP 304 >gi|319941799|ref|ZP_08016121.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Sutterella wadsworthensis 3_1_45B] gi|319804732|gb|EFW01599.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Sutterella wadsworthensis 3_1_45B] Length = 315 Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats. Identities = 127/316 (40%), Positives = 180/316 (56%), Gaps = 17/316 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H+PVL + L P + +D TFG GG+SR + +IA DRDP AV+ Sbjct: 6 HLPVLSREAPEALVARPDGLYVDGTFGRGGHSRLILERLAQQGRLIAFDRDPEAVAAAAA 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +F + A FS +++ + D G VDG+ D+GVSS QID RGFSF+ GPL Sbjct: 66 I---KDPRFQIVHAPFSAMKERLGDLGIRQVDGIFLDIGVSSPQIDDPSRGFSFRFEGPL 122 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S G +A++ + +A+V+++ +L GEE+ A RIA AIV+ R AP TT L+ Sbjct: 123 DMRMDTSCGETAAEWLARASVEEIAEVLADFGEERFAHRIARAIVEARSRAPITTTGALA 182 Query: 193 SLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 L++ V ++ + HPATR+FQA+RI VN+E++EL L SA L G L V+SFH Sbjct: 183 KLVEAAVPKNRRDAAQHPATRTFQAVRIQVNHELDELKTTLESAGALLAPAGRLAVISFH 242 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNA---HPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SLEDR+VK+FF R + +P A F + + ++PT+ + N R+RS Sbjct: 243 SLEDRIVKRFFEKRLHPDRDLDPRLPMPAGFNAQPWFCDVIR--ILPTKSEAESNPRARS 300 Query: 309 AKLRAGMRTVERSIED 324 + LR G RT R ED Sbjct: 301 SVLRVGTRTA-RLWED 315 >gi|297559864|ref|YP_003678838.1| S-adenosyl-methyltransferase MraW [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844312|gb|ADH66332.1| S-adenosyl-methyltransferase MraW [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 357 Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats. Identities = 110/311 (35%), Positives = 175/311 (56%), Gaps = 10/311 (3%) Query: 20 HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74 HVPV+L++++ LL P PG V++D T G GG+S + + G ++ +DRD A+ Sbjct: 45 HVPVMLDRIVELLAPALERPGAVLVDGTLGLGGHSEALLRACPGMRLVGVDRDTTALERS 104 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y ++ A +S + + + G V+ DLGVSS Q+D DRGF++ Sbjct: 105 AARLAPYADRTHFVHAVYSDIPRALDEAGAAEADAVLLDLGVSSPQLDETDRGFAYAHDA 164 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM ++A++VVN V +LTR+L GEE+ ASR+A AI ++R AP ++T+ Sbjct: 165 PLDMRMDRDQSLTAAEVVNTYPVAELTRVLRTYGEERFASRVARAIERQRAQAPIESTRA 224 Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ L+++ + + + HPA R+FQ LRI VN E+ L + L +A L GG + V+S Sbjct: 225 LAELVREAIPAATRRTGGHPAKRAFQGLRIEVNAELSILERALPAAIARLAGGGRVAVLS 284 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 +HSLEDR+ K+ A+ + +P + +T+ +PT E+ N R++SA Sbjct: 285 YHSLEDRMTKRALAALATDTTPADLPVPLPERQPELRLLTRGAELPTDEENERNPRAQSA 344 Query: 310 KLRAGMRTVER 320 +LRA R Sbjct: 345 RLRAAERVRPP 355 >gi|94984873|ref|YP_604237.1| methyltransferase [Deinococcus geothermalis DSM 11300] gi|263446197|sp|Q1J0B6|RSMH_DEIGD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|94555154|gb|ABF45068.1| methyltransferase [Deinococcus geothermalis DSM 11300] Length = 308 Score = 334 bits (856), Expect = 2e-89, Method: Composition-based stats. Identities = 114/293 (38%), Positives = 172/293 (58%), Gaps = 24/293 (8%) Query: 36 PGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95 PG+VI+D T G G++R + G++VI +D+DP+A++ +E Q ++ + + + Sbjct: 34 PGRVIVDGTLGGAGHTRLLLEAGASVIGIDQDPYALNRARE---AQLPQLTVLEGNYRDM 90 Query: 96 QDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQAN 152 ++ + GV DGV+ D+GVSS Q+D RGFS+ PLDMRM+ SG SA++VVN Sbjct: 91 RELLAGIGVTQVDGVLLDIGVSSFQLDDAARGFSYHTDAPLDMRMAQSGESAAEVVNGYP 150 Query: 153 VKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATR 212 ++L I+ GEE+ + RIA AIV+ R AP Q+T L+ +I++ + IHPA R Sbjct: 151 EEELAAIIYEYGEERHSRRIARAIVQARTQAPIQSTVQLAEIIKRAYP-GFSKGIHPARR 209 Query: 213 SFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAV 272 +FQALRI VN+E+ L GLR+AE L GG L V++FHSLEDR+VK+F + Sbjct: 210 TFQALRIHVNDELGALRDGLRAAEALLTPGGRLAVIAFHSLEDRIVKRFLRAS------- 262 Query: 273 RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDD 325 +S+TK+ V ++E+ N R+RSAKLRA + + Sbjct: 263 ----------PTLKSLTKRPVEASEEERGRNPRARSAKLRAAEKVAAPEGLPE 305 >gi|332527095|ref|ZP_08403175.1| 16S rRNA m(4)C1402 methyltranserfase [Rubrivivax benzoatilyticus JA2] gi|332111526|gb|EGJ11508.1| 16S rRNA m(4)C1402 methyltranserfase [Rubrivivax benzoatilyticus JA2] Length = 313 Score = 334 bits (856), Expect = 2e-89, Method: Composition-based stats. Identities = 121/319 (37%), Positives = 180/319 (56%), Gaps = 15/319 (4%) Query: 11 SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRD 67 +A+ T H VLL + + L + +D TFG GG++R+ S V+A DRD Sbjct: 2 TAVTQTGRAHTTVLLAEAVEALVTQADGLYVDGTFGRGGHTRALLAALSPRARVLAFDRD 61 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRG 124 P A++ +F++ A+F +++ + +GV GV+ DLGVSS QID +RG Sbjct: 62 PEAIAAAA---AIDDPRFTICHASFGAMREELAARGVGQVQGVLLDLGVSSPQIDTPERG 118 Query: 125 FSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 FSF+ PLDMRM + G +A+D + +A+ + + +++ GEE+ A +IA A+V RRQ Sbjct: 119 FSFRFDAPLDMRMDTTRGETAADFLARADERHIAQVIRDYGEERFALQIAKAVVARRQGG 178 Query: 184 -PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 +TT +LS+L+ + V + + PATR+FQALRIFVN E+E L QGL +A + L G Sbjct: 179 DQLRTTGELSALVARAVKTREPGQ-DPATRTFQALRIFVNAELEALEQGLSAALQLLAPG 237 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G L+V+SFHSLEDR+VK F S R + A P + V P ++V Sbjct: 238 GRLVVISFHSLEDRIVKNFITRESRDEFDRRAPM---APPRALKLKALARVKPGDDEVRA 294 Query: 303 NRRSRSAKLRAGMRTVERS 321 N R+RSA +R RT + Sbjct: 295 NPRARSAVMRVAERTEVPA 313 >gi|219682152|ref|YP_002468536.1| hypothetical protein BUAPTUC7_222 [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|254813208|sp|B8D7C6|RSMH_BUCAT RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|219621885|gb|ACL30041.1| hypothetical protein BUAPTUC7_222 [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] Length = 312 Score = 334 bits (856), Expect = 2e-89, Method: Composition-based stats. Identities = 122/312 (39%), Positives = 187/312 (59%), Gaps = 19/312 (6%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSC 73 I H+PV+ +++I L + +D+TFG GG+S K + ++DRDP A S Sbjct: 4 IFKHIPVMKKELIDSLKIKKNGIYIDSTFGTGGHSNEILKKLGQSGRLYSIDRDPIAFSI 63 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQK 129 G + +F + FS+L D+ ++ V+G++FDLGVSS+QID RGFSF+ Sbjct: 64 GSKI---KDSRFHIINENFSKLLDFAKNEKIIGKVNGIIFDLGVSSIQIDDYRRGFSFKN 120 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM+ + GISAS+ + ++NVK+++ +L GEE+ + +IA+AI +R Q +T Sbjct: 121 DGPLDMRMNPNYGISASEWLFESNVKEISFVLKNFGEERFSRKIAYAIKRRSQIKKITST 180 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+++I+KT+ KN HPA RSFQA+RI++N E+EE+ + L S K LK GG + ++ Sbjct: 181 LELANIIKKTIPT-KNKFKHPARRSFQAIRIYINQELEEIHKALESTLKILKPGGRISII 239 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFN 303 SFHSLEDRLVKKF S K + M + + I + ++PTQ ++ N Sbjct: 240 SFHSLEDRLVKKFMIKNSTKAIIPYGMPITEEQLNRLTTCKLKIINR--ILPTQNEINNN 297 Query: 304 RRSRSAKLRAGM 315 R+RS+ LR Sbjct: 298 PRARSSVLRIAE 309 >gi|257056486|ref|YP_003134318.1| S-adenosyl-methyltransferase MraW [Saccharomonospora viridis DSM 43017] gi|256586358|gb|ACU97491.1| S-adenosyl-methyltransferase MraW [Saccharomonospora viridis DSM 43017] Length = 327 Score = 334 bits (856), Expect = 2e-89, Method: Composition-based stats. Identities = 110/310 (35%), Positives = 175/310 (56%), Gaps = 10/310 (3%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCG 74 H+PVL+++V+ L PA +++D T G GG++ + + I LDRDP A+ Sbjct: 16 HLPVLVDRVLELFEPAVSDRDAILVDTTLGLGGHTEALLSAYPRLRVIGLDRDPEALERS 75 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + Y + + +++D + + V+GV+ DLGVSSMQ+D DRGF++ ++ Sbjct: 76 RRRLARYGSRVQFVHTVYDRIRDVLAELDVPAVEGVLMDLGVSSMQLDRDDRGFAYARNA 135 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + GI+A+DV+N +V +LTR+L GEE+ A RIA A+V R+ PF T++ Sbjct: 136 PLDMRMDPTTGITAADVLNTYSVDELTRVLRDYGEERFARRIAKAVVAERKREPFDTSER 195 Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L L+ TV + HPA R+FQALRI VN E++ L + +A +L GG ++V S Sbjct: 196 LVRLLYATVPAGSRRTGGHPAKRTFQALRIEVNGELDILRAAVPAAIDSLAVGGRIVVES 255 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 +HSLEDR+VK+ + + H + +T+ +E++ N R+ S Sbjct: 256 YHSLEDRIVKQALTRAATSRTPEGLPVELPGHGPKLRLLTRGAEKADEEEIRRNPRAASV 315 Query: 310 KLRAGMRTVE 319 +LRA + E Sbjct: 316 RLRAAEKRGE 325 >gi|319944706|ref|ZP_08018970.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Lautropia mirabilis ATCC 51599] gi|319741955|gb|EFV94378.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Lautropia mirabilis ATCC 51599] Length = 329 Score = 333 bits (855), Expect = 2e-89, Method: Composition-based stats. Identities = 123/313 (39%), Positives = 180/313 (57%), Gaps = 14/313 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72 + G H+PVLL + +A L P V +D TFG GG+SR + ++ALDRDP AV+ Sbjct: 13 SSGAHLPVLLHEAVAALAIRPDGVYVDGTFGRGGHSRHILQALGPKGRLLALDRDPEAVA 72 Query: 73 CGQETMRDYKE-QFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQ 128 + ++ + +F + A FS L + + G +DG++ DLG+SS Q+D RGFSF Sbjct: 73 AARAWKQESGDARFEIVHARFSSLDEVLDAHGLTHIDGLLLDLGISSPQVDDPRRGFSFT 132 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS---AP 184 GPLDMRM + G+SA + + QA V+ +T +L G+E+ A IA I RR Sbjct: 133 GDGPLDMRMDPTVGLSAHEWLMQATVEQITEVLKRDGDERFAFPIAKEIAARRDQTDGQG 192 Query: 185 FQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 QTT+ L+ L+ + KN+ +PATR+FQALRI N+E ELA+ L A + L GG Sbjct: 193 IQTTRQLADLVAGVIRRRQKNSAKNPATRTFQALRIHTNDEGGELARVLNVALRRLATGG 252 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 L V+SFHS EDR+VK+F A +G+ + + + +S+ + V+P + +VA N Sbjct: 253 RLSVISFHSNEDRVVKQFIARHAGRDAERHPVTGAWLAEPLLKSLGR--VLPGEAEVATN 310 Query: 304 RRSRSAKLRAGMR 316 R+RSA LR R Sbjct: 311 PRARSAILRVAER 323 >gi|289522914|ref|ZP_06439768.1| S-adenosyl-methyltransferase MraW [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503938|gb|EFD25102.1| S-adenosyl-methyltransferase MraW [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 300 Score = 333 bits (855), Expect = 2e-89, Method: Composition-based stats. Identities = 112/308 (36%), Positives = 180/308 (58%), Gaps = 25/308 (8%) Query: 20 HVPVLLEKVIALLNPAPG-KVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76 HVPVL ++I +L+ + K+++DAT G GG++ + + ++ LD+D A+ E Sbjct: 6 HVPVLTNEIINILSLSDDLKLVVDATVGLGGHAYALLSTFPDIKLLGLDQDETALEIAYE 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 ++ + E+ L ++ F + D V + VD ++FDLGVSS+QID +RGFSF K GP Sbjct: 66 RLKPFGERVLLVKSNFRFIDDVVKNHFRSVAVDAILFDLGVSSLQIDDEERGFSFNKPGP 125 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP-FQTTQD 190 +DMRM ++A D++N +KDL+ I GEE+ + +IA AIV+ R+ +T + Sbjct: 126 IDMRMDREAKVTAFDIINNYCIKDLSDIFYKYGEERYSRQIAKAIVRYREQKGLIASTAE 185 Query: 191 LSSLIQKTVYFS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L +I++ + + HPA R FQALRI VN+E+ L GL+++ L++GG LIV+ Sbjct: 186 LVEIIRRALPAKIQRQMGKHPARRVFQALRIVVNDELGALESGLKNSLGCLRSGGHLIVI 245 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 S+HSLEDR+VK F + + + +KK ++P +E++ N RSRS Sbjct: 246 SYHSLEDRIVKHSFKDWEKEGIG--------------KIFSKKPILPKREEIEGNPRSRS 291 Query: 309 AKLRAGMR 316 AKLR ++ Sbjct: 292 AKLRVLIK 299 >gi|114321350|ref|YP_743033.1| S-adenosyl-methyltransferase MraW [Alkalilimnicola ehrlichii MLHE-1] gi|123127253|sp|Q0A6J4|RSMH_ALHEH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|114227744|gb|ABI57543.1| S-adenosyl-methyltransferase MraW [Alkalilimnicola ehrlichii MLHE-1] Length = 317 Score = 333 bits (855), Expect = 2e-89, Method: Composition-based stats. Identities = 112/307 (36%), Positives = 165/307 (53%), Gaps = 12/307 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H PVLL++ + L P V +D TFG GG++ + +DRDP A++ + Sbjct: 11 HRPVLLDEALDALAIRPHGVYVDGTFGRGGHAAGILARLGPEGRLWLVDRDPEAIAVARA 70 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 D + ++ F +L + G VDG++ DLGVSS Q+D +RGFSF + GP Sbjct: 71 RHGD-DPRCTIAHGRFDELPGRLEAAGLLHRVDGLLLDLGVSSPQLDSAERGFSFMREGP 129 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF-QTTQD 190 LDMRM S G++A + + Q + K L+R L GEE+ + RIA A+++ R+ +TT Sbjct: 130 LDMRMDTSRGVTAREWLEQVDEKTLSRALRDYGEERHSRRIARALIRAREDGALPETTGA 189 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ LI + V HPATRSFQALRI +N E+E L L L GG L+V+SF Sbjct: 190 LARLIAENVPGRPEPGKHPATRSFQALRIAINGELEALDALLERICDLLAPGGRLVVISF 249 Query: 251 HSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR VK++ +S + + A +S+ + + P + + A N R+RSA Sbjct: 250 HSLEDRRVKRYIRKQSTVGDLPPSVPVAPEALQPRLRSVGR-ALRPGEAEQAANPRARSA 308 Query: 310 KLRAGMR 316 +R R Sbjct: 309 VMRVAER 315 >gi|254415023|ref|ZP_05028786.1| S-adenosyl-methyltransferase MraW [Microcoleus chthonoplastes PCC 7420] gi|196178170|gb|EDX73171.1| S-adenosyl-methyltransferase MraW [Microcoleus chthonoplastes PCC 7420] Length = 291 Score = 333 bits (855), Expect = 2e-89, Method: Composition-based stats. Identities = 114/312 (36%), Positives = 158/312 (50%), Gaps = 26/312 (8%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDP 68 M H VL +++IA L PG LDAT G GG+S +V D Sbjct: 1 MEFDAQTAQFFHRSVLSQELIAGLAIRPGGHYLDATVGGGGHSELILSAAPDVRVTAIDQ 60 Query: 69 FAVSCGQE--TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126 A + + Y ++ ++ F Q P+ DG++ DLGVSS Q+D DRGFS Sbjct: 61 DAQAIAAAQTRLASYGDRIQFWRGNFVDYQP--PESLFDGIIADLGVSSAQLDIPDRGFS 118 Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 F+ PLDMRM ++A+ ++N + L + GEE+ + RIA AIV+RR PF Sbjct: 119 FRHQAPLDMRMDQRQSLTAAQIINHWDETQLANTIYEYGEERLSRRIARAIVERR---PF 175 Query: 186 QTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 +TT L+ I ++V + RIHPATR+FQALRI VN E+ L + L A + LK GG Sbjct: 176 ETTTQLAEAIARSVPKKYRYGRIHPATRTFQALRIAVNQELSSLEKFLNCAPRWLKPGGR 235 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 + ++SFHSLEDRLVK + + +TKK + P + N Sbjct: 236 IGIISFHSLEDRLVKHHLRDS-----------------PILRVLTKKPITPQPTERDENP 278 Query: 305 RSRSAKLRAGMR 316 R+RSAKLR R Sbjct: 279 RARSAKLRLAER 290 >gi|29840135|ref|NP_829241.1| S-adenosyl-methyltransferase MraW [Chlamydophila caviae GPIC] gi|33301363|sp|Q823N6|RSMH_CHLCV RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|29834483|gb|AAP05119.1| S-adenosyl-methyltransferase MraW [Chlamydophila caviae GPIC] Length = 297 Score = 333 bits (854), Expect = 2e-89, Method: Composition-based stats. Identities = 110/304 (36%), Positives = 161/304 (52%), Gaps = 20/304 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI---ALDRDPFAVSCGQE 76 H+PVL+ + ++ + + D T GAGG++ +F ++I DRD A+S +E Sbjct: 7 HIPVLVNECLSWFSDRNPRSFCDVTVGAGGHAEAFLSTYPSIISYDGSDRDATALSLARE 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ-KSGPLDM 135 + + ++ L A+F L + DG++ DLGVSSMQ+D RGFSFQ + LDM Sbjct: 67 RLEKFGDRVHLHHASFEDLAQDPKENVYDGILADLGVSSMQLDTLSRGFSFQGEDHDLDM 126 Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM S GI+AS+V+N ++L +I GEE +A+AIV R+ T +DL Sbjct: 127 RMDTSQGITASEVLNTLREEELGKIFREYGEEPHWKNVANAIVHFRRRKKIITVKDLKEA 186 Query: 195 IQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 + + +IHP T FQALR++VN E +L L SA + L G L+++SF S Sbjct: 187 TARVFPSYRLRKKIHPLTLIFQALRVYVNQEDVQLKVLLESAMRWLAPKGRLVIISFCSS 246 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 EDR VK FF + + +TKKVV+PT E++ N R RSAKLR Sbjct: 247 EDRPVKWFFREAEKSGLG--------------KILTKKVVMPTYEEIRRNPRCRSAKLRC 292 Query: 314 GMRT 317 +T Sbjct: 293 FEKT 296 >gi|189501435|ref|YP_001960905.1| S-adenosyl-methyltransferase MraW [Chlorobium phaeobacteroides BS1] gi|263445802|sp|B3EQC6|RSMH_CHLPB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|189496876|gb|ACE05424.1| S-adenosyl-methyltransferase MraW [Chlorobium phaeobacteroides BS1] Length = 332 Score = 333 bits (854), Expect = 3e-89, Method: Composition-based stats. Identities = 110/316 (34%), Positives = 177/316 (56%), Gaps = 21/316 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC--------KMGSNVIALDRDPFAV 71 H+PV++ +V+A L + +D T G GG+S + + GS +I +D+D FA+ Sbjct: 7 HLPVMVREVVAWL-VRRAGIYVDGTLGGGGHSLAILRALRDKGLEKGSFLIGIDQDSFAI 65 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDY--------VPDKGVDGVVFDLGVSSMQIDCGDR 123 + + T+ ++E+ L Q F ++ D + V G++ DLGVSS QID +R Sbjct: 66 AEAERTLASFRERTRLVQGNFREIADIVSTLRENQLRGMEVAGILLDLGVSSFQIDTSER 125 Query: 124 GFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR-Q 181 GFS+ +SGPLDMRM G SA+D+VN ++L I GEEK++ RIA AI R + Sbjct: 126 GFSYLRSGPLDMRMEPDEGQSAADIVNTFEERELADIFFRFGEEKKSRRIASAICSWRNE 185 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 + TQDL+++++ V + +I +R FQALRI VN+E+ L L+ +L Sbjct: 186 RGVIRGTQDLAAIVRSVVSVP-DQQIKSLSRIFQALRIAVNDELGALESALKEGAASLSP 244 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDV 300 G + V+S+HS+EDR+VK +F + + + + + H A F +T+K ++ ++V Sbjct: 245 QGRMAVMSYHSIEDRMVKHYFRTLAADDWGPKGVALREPLHKAAFTLVTRKALIAGDDEV 304 Query: 301 AFNRRSRSAKLRAGMR 316 N R+RSAK+R R Sbjct: 305 NENSRARSAKMRVIER 320 >gi|313661472|ref|NP_001186351.1| putative S-adenosyl-L-methionine-dependent methyltransferase METT5D1 [Gallus gallus] Length = 409 Score = 333 bits (854), Expect = 3e-89, Method: Composition-based stats. Identities = 134/335 (40%), Positives = 181/335 (54%), Gaps = 38/335 (11%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 HVPV++E+V++ L+P G+ LD TFGAGG+S + + SN+ ALDRDP A Q+ Sbjct: 74 HVPVMMEEVVSCLSPQSGQCFLDMTFGAGGHSTALLEKASNITIYALDRDPTAYKIAQQL 133 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 Y +Q FSQ + + GV DGV+ D G SSMQ D +RGFS QK GP Sbjct: 134 SESYPKQIQALLGQFSQSEALLISSGVEPGTLDGVLLDAGCSSMQFDTPERGFSLQKDGP 193 Query: 133 LDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM +A+DVVN + + L IL GEEK A +IA AIV+ R P T Sbjct: 194 LDMRMDSDRYPDMPTAADVVNALDQQALASILRTYGEEKHAKKIASAIVQARSIYPITRT 253 Query: 189 QDLSSLIQKTVYFSK--------NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 Q L+S++ S H AT++FQ LRIFVN+E+ EL GL++AEK LK Sbjct: 254 QQLASIVAGAFPASALYARKDLLQRPTHIATKTFQGLRIFVNDELHELFIGLKTAEKFLK 313 Query: 241 AGGLLIVVSFHSLEDRLVKKFFAS-------------------RSGKVMAVRHMIPSNAH 281 GG L+ +SFHSLEDR++K+F ++ H P Sbjct: 314 PGGRLVALSFHSLEDRIIKRFLHGIDMTEKYNLGSKQKIRQALKNCSKEEDTHEFPHGKS 373 Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 + + I KKV+ P +D+ N R+RSAKLRA ++ Sbjct: 374 NSKWTFIQKKVLTPQAKDILTNPRARSAKLRAAVK 408 >gi|149022854|gb|EDL79748.1| similar to RIKEN cDNA 0610027B03, isoform CRA_a [Rattus norvegicus] gi|149022855|gb|EDL79749.1| similar to RIKEN cDNA 0610027B03, isoform CRA_a [Rattus norvegicus] Length = 406 Score = 333 bits (854), Expect = 3e-89, Method: Composition-based stats. Identities = 136/334 (40%), Positives = 183/334 (54%), Gaps = 37/334 (11%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 H+PV++++V+ L P G+V LD TFG+GG+S++ + +V ALDRDP A + + Sbjct: 72 HIPVMVDEVVQCLTPQKGQVFLDMTFGSGGHSKAILQKEPDVTVYALDRDPVAFTLAERL 131 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 Y Q FSQ + + GV DGV+ DLG SSMQ+D +RGFS +K GP Sbjct: 132 SEMYPTQIHAMLGQFSQAETLLMKAGVQPGTVDGVLLDLGCSSMQLDAPERGFSLRKDGP 191 Query: 133 LDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM +A+DVVN + + L IL GEEK A +IA AI++ R + P T Sbjct: 192 LDMRMDGDRYPDMPTAADVVNALDQQALASILRAYGEEKHAKKIASAIIQARSTYPISRT 251 Query: 189 QDLSSLIQKTVYFSK--------NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 Q L+S++ S H AT++FQALRIFVNNE+ EL GLR+A+K LK Sbjct: 252 QQLASIVAGAFPPSAIYARKDLLQRSTHIATKTFQALRIFVNNELNELYTGLRTAQKFLK 311 Query: 241 AGGLLIVVSFHSLEDRLVKKFF---------------ASRSGKVMAVRHMIPSN---AHP 282 GG L+ +SFHSLEDR+VK+F R M H I P Sbjct: 312 PGGRLVALSFHSLEDRIVKRFLLGISMTERFNLSIRQKVRQTSQMDSDHEIEERRCVRAP 371 Query: 283 AVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 ++ I KKV+ P +DV N R RSAKLRA ++ Sbjct: 372 LKWELIHKKVLTPEDQDVQANPRGRSAKLRAAIK 405 >gi|154250452|ref|YP_001411277.1| S-adenosyl-methyltransferase MraW [Fervidobacterium nodosum Rt17-B1] gi|263447049|sp|A7HNY7|RSMH_FERNB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|154154388|gb|ABS61620.1| S-adenosyl-methyltransferase MraW [Fervidobacterium nodosum Rt17-B1] Length = 294 Score = 332 bits (853), Expect = 3e-89, Method: Composition-based stats. Identities = 109/309 (35%), Positives = 162/309 (52%), Gaps = 32/309 (10%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCG 74 H+PVLL +V+ L P V +D T G GG++R+ + G VI +D D + Sbjct: 8 HHIPVLLNEVVENLIWKPDGVYVDCTVGEGGHTRAIAERVLPYGGRVIGIDVDSEVLQIA 67 Query: 75 QETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + Y LF+ ++ +L + VDG++ DLGVS+ Q+ RGFSF + Sbjct: 68 EHNLLSY-PNVQLFKFSYVELPVLLSLLQVHKVDGLLVDLGVSTYQLKAEGRGFSFNQDE 126 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ + ++A +VN + L I+ GEE + RIA AIV+ R P QTT+ Sbjct: 127 PLDMRMNLENNLTAYHIVNTYPEEKLADIIYNYGEENFSRRIARAIVQNR---PIQTTRQ 183 Query: 191 LSSLIQKTVYFSK--NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L +I++ + + + N + H AT++FQA+RI VN EIE +++ L A L +GG L ++ Sbjct: 184 LVEVIKRALPYKEVHNRKRHFATKTFQAIRIEVNKEIENISKFLEFAPDYLNSGGRLAII 243 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDR+VK F + + PT +VA N R+RS Sbjct: 244 SFHSLEDRIVKHVFKNDKRLKPIGDF------------------ISPTTFEVAENPRARS 285 Query: 309 AKLRAGMRT 317 AKLR R Sbjct: 286 AKLRLAERV 294 >gi|320535363|ref|ZP_08035477.1| S-adenosyl-methyltransferase MraW [Treponema phagedenis F0421] gi|320147765|gb|EFW39267.1| S-adenosyl-methyltransferase MraW [Treponema phagedenis F0421] Length = 317 Score = 332 bits (853), Expect = 3e-89, Method: Composition-based stats. Identities = 111/315 (35%), Positives = 168/315 (53%), Gaps = 12/315 (3%) Query: 20 HVPVLLEKVIALLNPA-PGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76 H VLL++ ++LL PA + +D T G GG++ +F K + I +D DP + + Sbjct: 5 HKSVLLQESLSLLKPASEDTLFVDGTLGEGGHTEAFLKTYPQLSAIGIDADPTIQAKAKL 64 Query: 77 TMRDYKEQFSLFQAT----FSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 ++ + + F F P + ++FDLG+S RGFSFQ P Sbjct: 65 RLQPFASRVQYFSGWSDDFFKNYSTEYPKPNI--ILFDLGISMFHYIESGRGFSFQAEEP 122 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMR++ + +SA++++N ++L I GEE+ + +IA AI RR+ F+T DL Sbjct: 123 LDMRINPATSLSAAEIINTYKEEELASIFYTYGEERFSRKIAGAICLRRKEQEFKTAGDL 182 Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 + +I K V + ++ RIHPATRSFQALRI VN E++ L L+ A + L G L V+SF Sbjct: 183 AEVIFKAVPPAYRHGRIHPATRSFQALRIKVNGELDRLPDLLKLAFQRLALNGKLGVISF 242 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 HSLEDR+VK++F + I + Q +T K V+PT E++ N SRSA Sbjct: 243 HSLEDRIVKRYFRDLAKNCRCPPEMPICKCGGRPLAQLLTGKPVIPTDEEIRVNPASRSA 302 Query: 310 KLRAGMRTVERSIED 324 KLRA + + Sbjct: 303 KLRAVKKILTEEGAA 317 >gi|13471557|ref|NP_103123.1| S-adenosyl-methyltransferase MraW [Mesorhizobium loti MAFF303099] gi|20139098|sp|Q98KA5|RSMH_RHILO RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|14022299|dbj|BAB48909.1| mll1565 [Mesorhizobium loti MAFF303099] Length = 338 Score = 332 bits (853), Expect = 3e-89, Method: Composition-based stats. Identities = 144/336 (42%), Positives = 199/336 (59%), Gaps = 36/336 (10%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H+PVLL +V+ L PA +I+D TFGAGGY+R+ G++V+A+DRDP A++ G++ Sbjct: 18 HIPVLLGEVLEALAPAERDIIIDGTFGAGGYTRAILATGASVVAIDRDPDAIAAGRDLEV 77 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 + L QA FS L ++V DGVV D+GVSSMQ+D +RGFSF+ GPLDMRM+ Sbjct: 78 QSGGRLRLVQAPFSTLDEHVE--SADGVVLDIGVSSMQLDQAERGFSFRFDGPLDMRMAQ 135 Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199 +G+SA+DVVN DL RI G LGEE+ A RIA I RR+ PF+ T +L+ I+ + Sbjct: 136 AGLSAADVVNSFKPGDLARIFGFLGEERHAGRIARMIEARREKKPFEGTLELADAIETHI 195 Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259 + ++IHPATR FQALRI+VN+E+ ELA+ L +AE+ALK GG L+VV+FHSLEDR+VK Sbjct: 196 GRAPKDKIHPATRVFQALRIYVNDELGELAKALFAAERALKPGGRLVVVTFHSLEDRIVK 255 Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR--------------- 304 +F A R+ RH+ + A A F+ V +VA N Sbjct: 256 RFIADRADVATGSRHLPEAQARTATFRKAGGG-VTAGDAEVAANPRARSARLRAAIRTEA 314 Query: 305 --RSRSAKLRAGMRTVERSIEDDSFVHLPRLPTLSQ 338 R+ D S LP+LP + + Sbjct: 315 PARA----------------GDFSIFGLPKLPGIDR 334 >gi|121595969|ref|YP_987865.1| S-adenosyl-methyltransferase MraW [Acidovorax sp. JS42] gi|263433389|sp|A1WC14|RSMH_ACISJ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|120608049|gb|ABM43789.1| S-adenosyl-methyltransferase MraW [Acidovorax sp. JS42] Length = 308 Score = 332 bits (853), Expect = 3e-89, Method: Composition-based stats. Identities = 118/310 (38%), Positives = 173/310 (55%), Gaps = 16/310 (5%) Query: 20 HVPVLLEKVIALL---NPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSC 73 H VLL++ + L AP +D TFG GG+SR + ++A D+D A+ Sbjct: 7 HTTVLLDEAVHALLGDGDAPAGTFVDGTFGRGGHSRLILQRLGPQGRLVAFDKDTEAIQA 66 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 R +FS+ FS L + +P V GV+ DLGVSS QID RGFSF+ GPL Sbjct: 67 A---ARITDARFSIRHQGFSHLGE-LPAASVSGVLLDLGVSSPQIDDPQRGFSFRFDGPL 122 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR-QSAPFQTTQDL 191 DMRM + G S ++ + A + ++ GEE+ A IA AIV RR + P +T +L Sbjct: 123 DMRMDTTRGQSVAEWLADAETAQIAEVIRDYGEERFAGPIAKAIVARRTERGPIASTAEL 182 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ V + + +PATR+FQALRIF+N E+EEL Q L + L+ GG L+V+SFH Sbjct: 183 ADIVAGAVKTREPGQ-NPATRTFQALRIFINAELEELQQALEGSLHVLRPGGRLVVISFH 241 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+VK+F A S +V R + P +++ + + P+ ++VA N R+RSA + Sbjct: 242 SLEDRIVKQFIAQHSKEVY-DRRAPFAPPQPMRLRALER--IKPSTDEVAANARARSAVM 298 Query: 312 RAGMRTVERS 321 R RT + Sbjct: 299 RVAERTEVPA 308 >gi|15841657|ref|NP_336694.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis CDC1551] gi|161352465|ref|NP_216681.2| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis H37Rv] gi|161511532|ref|NP_855838.2| S-adenosyl-methyltransferase MraW [Mycobacterium bovis AF2122/97] gi|215403555|ref|ZP_03415736.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis 02_1987] gi|215431098|ref|ZP_03429017.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis EAS054] gi|218753888|ref|ZP_03532684.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis GM 1503] gi|219558145|ref|ZP_03537221.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis T17] gi|254551204|ref|ZP_05141651.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260187163|ref|ZP_05764637.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis CPHL_A] gi|260201284|ref|ZP_05768775.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis T46] gi|294993552|ref|ZP_06799243.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis 210] gi|297634755|ref|ZP_06952535.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis KZN 4207] gi|307084822|ref|ZP_07493935.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis SUMu012] gi|308369641|ref|ZP_07666771.1| hypothetical protein TMBG_00713 [Mycobacterium tuberculosis SUMu002] gi|313659080|ref|ZP_07815960.1| 16S rRNA m(4)C1402 methyltranserfase [Mycobacterium tuberculosis KZN V2475] gi|54037824|sp|P65430|RSMH_MYCBO RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|54041487|sp|P65429|RSMH_MYCTU RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262831560|sp|A5U4J2|RSMH_MYCTA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263460389|sp|A1KKK8|RSMH_MYCBP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263460410|sp|C1AQ81|RSMH_MYCBT RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|13881910|gb|AAK46508.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551] gi|308326909|gb|EFP15760.1| hypothetical protein TMBG_00713 [Mycobacterium tuberculosis SUMu002] gi|308365608|gb|EFP54459.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis SUMu012] Length = 344 Score = 332 bits (853), Expect = 3e-89, Method: Composition-based stats. Identities = 119/332 (35%), Positives = 178/332 (53%), Gaps = 19/332 (5%) Query: 9 MSSAIHHTIG-DHVPVLLEKVIALLNPA-----PGK---VILDATFGAGGYSRSFCKMGS 59 M+ G HVPVL ++ LL PA P V+LDAT GAGG++ F + Sbjct: 1 MADPGSGPTGFGHVPVLAQRCFELLTPALTRYYPDGSQAVLLDATIGAGGHAERFLEGLP 60 Query: 60 --NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDL 111 +I LDRDP A+ + + + ++ +L + L + + G VDG++FDL Sbjct: 61 GLRLIGLDRDPTALDVARSRLVRFADRLTLVHTRYDCLGAALAESGYAAVGSVDGILFDL 120 Query: 112 GVSSMQIDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQAS 170 GVSSMQ+D +RGF++ PLDMRM + ++A+D+VN + L IL GEE+ A Sbjct: 121 GVSSMQLDRAERGFAYATDAPLDMRMDPTTPLTAADIVNTYDEAALADILRRYGEERFAR 180 Query: 171 RIAHAIVKRRQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELA 229 RIA IV+RR PF +T +L +L+ + + ++ HPA R+FQALRI VN+E+E L Sbjct: 181 RIAAGIVRRRAKTPFTSTAELVALLYQAIPAPARRVGGHPAKRTFQALRIAVNDELESLR 240 Query: 230 QGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT 289 + +A AL GG + V+++ SLEDR+VK+ FA + H F+S+T Sbjct: 241 TAVPAALDALAIGGRIAVLAYQSLEDRIVKRVFAEAVASATPAGLPVELPGHEPRFRSLT 300 Query: 290 KKVVVPTQEDVAFNRRSRSAKLRAGMRTVERS 321 + ++ N RS +LRA R R+ Sbjct: 301 HGAERASVAEIERNPRSTPVRLRALQRVEHRA 332 >gi|317124641|ref|YP_004098753.1| S-adenosyl-methyltransferase MraW [Intrasporangium calvum DSM 43043] gi|315588729|gb|ADU48026.1| S-adenosyl-methyltransferase MraW [Intrasporangium calvum DSM 43043] Length = 371 Score = 332 bits (853), Expect = 4e-89, Method: Composition-based stats. Identities = 122/310 (39%), Positives = 181/310 (58%), Gaps = 10/310 (3%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74 HVP++ ++++ LL PA PG V +D T G GG++ G VI +DRD A++ Sbjct: 11 HVPIMRDRILDLLAPALSTPGAVHVDGTLGMGGHAEGVLSRFPGCRVIGVDRDREALTLA 70 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E + + ++F AT +L + D G VDG+VFDLGVSS+Q+D DRGF+++ Sbjct: 71 GERLAGFGDRFLPVHATNDELARVLLDSGLQHVDGIVFDLGVSSLQLDEEDRGFAYRVDA 130 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + G +A+DV+N +V+D+TRIL GEE+ A +IA AIV+ R+ PF T+ Sbjct: 131 PLDMRMDQTRGQTAADVLNTYSVEDVTRILREYGEERFARKIAVAIVREREDEPFATSGR 190 Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L L+++ + S+ HPA R+FQALRI VN+E+ + + +A L GG + V+S Sbjct: 191 LVELLRRVIPVASQRQSGHPAKRTFQALRIEVNDELGGWERAVAAAIDVLAVGGRMAVLS 250 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ FA + + H +++T+ P +V N R+ SA Sbjct: 251 FHSLEDRLTKRAFALGATSSAPRGLPVELPHHAPYLRALTRGAEEPDDAEVLANPRAASA 310 Query: 310 KLRAGMRTVE 319 KLRA R + Sbjct: 311 KLRAVERVRD 320 >gi|189502287|ref|YP_001958004.1| hypothetical protein Aasi_0908 [Candidatus Amoebophilus asiaticus 5a2] gi|263446692|sp|B3ESS3|RSMH_AMOA5 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|189497728|gb|ACE06275.1| hypothetical protein Aasi_0908 [Candidatus Amoebophilus asiaticus 5a2] Length = 310 Score = 332 bits (853), Expect = 4e-89, Method: Composition-based stats. Identities = 113/317 (35%), Positives = 168/317 (52%), Gaps = 15/317 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDR 66 M + H PVLLE+ + L P + +D TFG GG++++ + A D+ Sbjct: 1 MEILNEPSSTYHQPVLLEESLQGLAIQPDGIYIDTTFGGGGHAKAILAQLKRGKLFAFDQ 60 Query: 67 DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDR 123 D A S + F+ +A +Q ++ +DG++ DLGVSS QID R Sbjct: 61 DEDAESIASTW---HDPNFTFIRANSRFIQRFLAYHQIEKIDGLIADLGVSSYQIDTALR 117 Query: 124 GFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GFS + GPLDMRM S ++AS +VN + + LT++ GE A +A A++ R Sbjct: 118 GFSTRSEGPLDMRMDQSSSLTASQIVNTYSFEALTQLFRTYGELHSAPALAKALIAARTK 177 Query: 183 APFQTTQDLSSLIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 P +TTQ L + + FS + + FQALRI VN+E+ L L + + LK Sbjct: 178 HPIETTQSLKEI---ALPFSPPRKSAKFLAQVFQALRIEVNDELGALKSLLEQSLQLLKP 234 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 GG L+++S+HSLEDRLVK+F + + + + M + P F + KK +VPT+E++ Sbjct: 235 GGRLVIISYHSLEDRLVKRFIKTGNFEGELDKDMYGNPLQP--FVPVYKKAIVPTEEELV 292 Query: 302 FNRRSRSAKLRAGMRTV 318 N RSRSAKLR G RT Sbjct: 293 INSRSRSAKLRVGERTA 309 >gi|27229243|ref|NP_084066.2| probable methyltransferase-like protein 15 [Mus musculus] gi|81906157|sp|Q9DCL4|MET15_MOUSE RecName: Full=Probable methyltransferase-like protein 15; AltName: Full=Methyltransferase 5 domain-containing protein 1 gi|26362646|dbj|BAB22281.2| unnamed protein product [Mus musculus] gi|109730967|gb|AAI17550.1| Methyltransferase 5 domain containing 1 [Mus musculus] gi|109732458|gb|AAI15927.1| Methyltransferase 5 domain containing 1 [Mus musculus] gi|123225263|emb|CAM17438.1| methyltransferase 5 domain containing 1 [Mus musculus] gi|123231531|emb|CAM24681.1| methyltransferase 5 domain containing 1 [Mus musculus] gi|123231533|emb|CAM25317.1| methyltransferase 5 domain containing 1 [Mus musculus] Length = 406 Score = 332 bits (853), Expect = 4e-89, Method: Composition-based stats. Identities = 137/352 (38%), Positives = 190/352 (53%), Gaps = 44/352 (12%) Query: 2 ESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV 61 E K + M+ H+PV++++V+ L P G+V LD TFG+GG++R+ + +V Sbjct: 61 EEKELEAMAKL-------HIPVMVDQVVHCLAPQKGQVFLDMTFGSGGHTRAILQKEPDV 113 Query: 62 --IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVS 114 ALDRDP A + ++ R Y Q FSQ + + GV DG++ DLG S Sbjct: 114 MVYALDRDPVAYAIAEQLSRLYPTQIQALLGQFSQAEALLMKAGVQPGTIDGILMDLGCS 173 Query: 115 SMQIDCGDRGFSFQKSGPLDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQAS 170 SMQ+D +RGFS +K GPLDMRM +ASDVVN + + L IL GEEK A Sbjct: 174 SMQLDAPERGFSLRKDGPLDMRMDGDRYPDTPTASDVVNALDQQALASILRAYGEEKHAK 233 Query: 171 RIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSK--------NNRIHPATRSFQALRIFVN 222 +IA AI++ R + P TQ L+S++ S H AT++FQALRIFVN Sbjct: 234 KIASAIIQARSTYPISRTQQLASIVAGAFPPSAVYARKDLLQRSTHIATKTFQALRIFVN 293 Query: 223 NEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKF-------------FASRSGKV 269 NE+ EL GLR+AEK LK GG L+ +SFHSLEDR+VK+F + + Sbjct: 294 NELNELYAGLRTAEKFLKTGGRLVALSFHSLEDRIVKRFLLGISMTERFNLSIRQKVKQT 353 Query: 270 MAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 + + P ++ I KKV+ P +DV N R RSAKLRA ++ Sbjct: 354 SQLDSDQETEERHSVRAPLKWELIHKKVLTPEDQDVQDNPRGRSAKLRAAIK 405 >gi|294012787|ref|YP_003546247.1| S-adenosyl-methyltransferase [Sphingobium japonicum UT26S] gi|292676117|dbj|BAI97635.1| S-adenosyl-methyltransferase [Sphingobium japonicum UT26S] Length = 326 Score = 332 bits (853), Expect = 4e-89, Method: Composition-based stats. Identities = 135/319 (42%), Positives = 197/319 (61%), Gaps = 13/319 (4%) Query: 9 MSSAIHH--TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDR 66 MS++ H + H+PVL+++V+ L PG+V +D TFGAGGYS + G+ V A DR Sbjct: 1 MSASPDHAQSPERHIPVLIDEVLDALAINPGEVHVDGTFGAGGYSGAMADRGARVFAFDR 60 Query: 67 DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDR 123 DP A+ GQ + +L FS++++ + ++GV GV D+GVSSMQ+D +R Sbjct: 61 DPDAIREGQALAEEKG--VTLIAGEFSRMEELLAERGVTSVSGVTLDIGVSSMQLDRPER 118 Query: 124 GFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 GFSFQ GPLDM MS SG+SA+D +N A +++ IL GEE ++ R+A AIV+ R Sbjct: 119 GFSFQGDGPLDMTMSRSGMSAADFLNNAPEQEIADILYRYGEEPRSRRVAKAIVEAR--- 175 Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 P + T L+++++K + +++ PATR+FQA+RI VN E+EEL +GL +AE L+ GG Sbjct: 176 PLERTGQLANVVRKALGHKPHDKKDPATRTFQAIRIHVNRELEELERGLEAAEAILEEGG 235 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITKKVVVPTQEDVA 301 L VV+FHSLEDR+VK+F +RSG + +P F+ K V P ++A Sbjct: 236 RLAVVTFHSLEDRIVKQFLRNRSGSEASGSRHLPQRQSGPAPTFERPA-KAVRPGMVELA 294 Query: 302 FNRRSRSAKLRAGMRTVER 320 N RSRSA LR+ +RT Sbjct: 295 RNPRSRSATLRSAVRTSAP 313 >gi|325123733|gb|ADY83256.1| S-adenosylmethionine methyltransferase [Acinetobacter calcoaceticus PHEA-2] Length = 285 Score = 332 bits (852), Expect = 4e-89, Method: Composition-based stats. Identities = 103/289 (35%), Positives = 162/289 (56%), Gaps = 15/289 (5%) Query: 40 ILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ 96 +DATFG GG++R + V A D+DP A+ + +F++ A+F+ ++ Sbjct: 2 YIDATFGRGGHTRLLLSKLDENARVYAFDKDPQALEVASA-LAQEDPRFTIIHASFADIK 60 Query: 97 DYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQAN 152 + + + GV DG++ DLGVSS Q+D +RGFSF + GPLDMRM S G++A++ + + Sbjct: 61 EKMQEIGVMSVDGIMADLGVSSPQLDQAERGFSFMQDGPLDMRMDNSKGLTAAEWLLEIE 120 Query: 153 VKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATR 212 + L I+ GEE+ + RIA AI + TT L+ L++ + ++ HPATR Sbjct: 121 EEQLANIIYQYGEERYSRRIAKAIKQA---GKLDTTAQLAELVKTAHPKWEKHK-HPATR 176 Query: 213 SFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAV 272 +FQA+RI +N E++++ L A LK G L V+SFHSLEDRL+K+F S + Sbjct: 177 TFQAIRIAINKELDDIEVFLPQAVDLLKPKGRLSVISFHSLEDRLIKQFIQKESTLAEDI 236 Query: 273 RHMIPSNA-HPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVER 320 +P + I++ V ++E+V N RSRSA LR R ++ Sbjct: 237 GWGMPQQQVDTRRLKKISR--VRASEEEVKANPRSRSAWLRVAERLEQK 283 >gi|15643635|ref|NP_228681.1| S-adenosyl-methyltransferase MraW [Thermotoga maritima MSB8] gi|8134815|sp|Q9WZX6|RSMH_THEMA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|4981407|gb|AAD35954.1|AE001753_10 conserved hypothetical protein [Thermotoga maritima MSB8] Length = 299 Score = 332 bits (852), Expect = 4e-89, Method: Composition-based stats. Identities = 113/309 (36%), Positives = 180/309 (58%), Gaps = 29/309 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77 H+PV++ +VI L P K+ILD T G GG+SR+ + G +I +D D + +E Sbjct: 8 HIPVMVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEK 67 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++++ ++ SLF+ ++ + + G VDG++ DLGVS+ Q+ +RGF+F++ PLD Sbjct: 68 LKEFSDRVSLFKVSYREADFLLKTLGIEKVDGILMDLGVSTYQLKGENRGFTFEREEPLD 127 Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEK-QASRIAHAIVKRRQSAPFQTTQDLS 192 MRM S ++A V+N+ ++L RI+ GEEK A RIA IV+ R P TT DL Sbjct: 128 MRMDLESEVTAQKVLNELPEEELARIIFEYGEEKRFARRIARKIVENR---PLNTTLDLV 184 Query: 193 SLIQKTVYFS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +++ + + + H AT++FQA+RI+VN E+E L + L+ AE L GG ++V+SF Sbjct: 185 KAVREALPSYEIRRRKRHFATKTFQAIRIYVNRELENLKEFLKKAEDLLNPGGRIVVISF 244 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDR+VK+ F + + +T+K V P++E++ N R+RS + Sbjct: 245 HSLEDRIVKETFRNSKK-----------------LRILTEKPVRPSEEEIRENPRARSGR 287 Query: 311 LRAGMRTVE 319 LRA R E Sbjct: 288 LRAAERIEE 296 >gi|328675727|gb|AEB28402.1| S-adenosyl-methyltransferase MraW [Francisella cf. novicida 3523] Length = 305 Score = 332 bits (852), Expect = 4e-89, Method: Composition-based stats. Identities = 117/309 (37%), Positives = 174/309 (56%), Gaps = 16/309 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76 H VLL++ I LN P + +DATFG GG+S++ +IA D+D A+S + Sbjct: 1 MHYSVLLQESINDLNINPQGIYIDATFGRGGHSKAILDKLTTGRLIAFDKDLDAISYANQ 60 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + F + A+F+ + DY +DG++ DLGVSS Q+D RGFSF GP Sbjct: 61 KFQF--SNFEIVHASFASIYDYCLQHNLLSKIDGIIMDLGVSSPQLDNAARGFSFMHDGP 118 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTTQD 190 LDMRM S GI+AS + +V +L+ I + GEE+ A +IA I +Q+ TT + Sbjct: 119 LDMRMDVSKGITASQALEVLSVDELSYIFKVYGEERFARKIALRIKDYIQQNGSINTTLE 178 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ LI+ T+ K + +PATR FQALRI+VNNE+++L L + +KAGG + +SF Sbjct: 179 LAELIRMTI--GKREKKNPATRCFQALRIYVNNELKDLEALLENILAVIKAGGRIAAISF 236 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH---MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 HSLEDR+VK+ F++ + M+P ++ + ITKK +++ N RSR Sbjct: 237 HSLEDRIVKQKFSALINPKQELNRITKMLPQDSSQIKLKWITKKA-KANDDELNQNVRSR 295 Query: 308 SAKLRAGMR 316 SA LR + Sbjct: 296 SAILRVVEK 304 >gi|21672500|ref|NP_660567.1| hypothetical protein BUsg218 [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|8134808|sp|O85295|RSMH_BUCAP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|3435166|gb|AAC32335.1| hypothetical protein [Buchnera aphidicola] gi|21623120|gb|AAM67778.1| hypothetical 36.0 kDa protein [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 312 Score = 332 bits (852), Expect = 5e-89, Method: Composition-based stats. Identities = 112/316 (35%), Positives = 180/316 (56%), Gaps = 20/316 (6%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPF 69 ++ TI H+ V+ +++I L + +D TFG GG++ S K + A+DRDP Sbjct: 1 MNQTI-KHISVMKKELIESLKIKKNGIYIDGTFGMGGHALSILKTIGREGRLYAIDRDPN 59 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGF 125 +V G + ++F + + FS++ +Y V+G++FDLG SS+QI+ RGF Sbjct: 60 SVFIGNQI---KDKRFHIIHSNFSKILNYAKYNNIIGKVNGILFDLGTSSLQIENEKRGF 116 Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF+K+GPLDMRM+ +GISAS+ + ++++ + +L GEE+ + RIA+AI + Sbjct: 117 SFKKNGPLDMRMNPHAGISASEWLFKSDINKIYFVLKNFGEERFSKRIAYAIKDYCKKKK 176 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 T +L +I+K KN HPA R+FQA+RI++N E+EE+ +GL ++ K LK GG Sbjct: 177 INNTFELVDIIKKATPI-KNKFKHPAKRTFQAIRIYINQELEEIKKGLENSLKILKPGGR 235 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHP-----AVFQSITKKVVVPTQED 299 L ++SFHSLEDR+VK F S K + + + I + + PTQ++ Sbjct: 236 LSIISFHSLEDRIVKNFMMKYSKKATVPYGLPITENKLETLRICKLKIINR--IFPTQKE 293 Query: 300 VAFNRRSRSAKLRAGM 315 + N R+RS+ LR Sbjct: 294 IEKNPRARSSVLRTAE 309 >gi|296448271|ref|ZP_06890165.1| S-adenosyl-methyltransferase MraW [Methylosinus trichosporium OB3b] gi|296254223|gb|EFH01356.1| S-adenosyl-methyltransferase MraW [Methylosinus trichosporium OB3b] Length = 338 Score = 332 bits (852), Expect = 5e-89, Method: Composition-based stats. Identities = 147/334 (44%), Positives = 198/334 (59%), Gaps = 9/334 (2%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRD 67 M+ + H+PVLL++ +A L P G V LDATFGAGGY+R+ + V+ALDRD Sbjct: 1 MTMPPEQPMR-HIPVLLDEAMAALGPRSGGVYLDATFGAGGYTRALLAHENTRVLALDRD 59 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRG 124 P A+ G + + +L +A FS+L G+ DG+V D+GVSSMQ D +RG Sbjct: 60 PRAIRDGAALVAAAGGRLTLVEARFSELAQVAGRTGLAPLDGIVADIGVSSMQFDEAERG 119 Query: 125 FSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 FSF+ GPLDMRM SG SA+D+V +A + L IL GEE+ + RIA AIV R Sbjct: 120 FSFRNDGPLDMRMEGSGRSAADIVAEAEEEALADILYHYGEERASRRIARAIVHARLERK 179 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 +TT L+++I++ + IHPAT+SFQALRI VN+E+ EL L AE+ALK GG Sbjct: 180 IETTGALAAIIERAAP-GRPGEIHPATKSFQALRIAVNDELGELVAALAGAERALKPGGK 238 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK--KVVVPTQEDVAF 302 L++VSFHSLEDR+VK+F A RSG+ +P P I K + P++ ++A Sbjct: 239 LVIVSFHSLEDRIVKQFLAERSGRGETRSRRLPGEPVPPPPTFIVDDFKPLAPSEREIAA 298 Query: 303 NRRSRSAKLRAGMRTVERSIE-DDSFVHLPRLPT 335 N RSRSA+LR RT D+ L RLP Sbjct: 299 NPRSRSARLRVATRTDAPPRPVGDALARLARLPE 332 >gi|319791660|ref|YP_004153300.1| s-adenosyL-methyltransferase mraw [Variovorax paradoxus EPS] gi|315594123|gb|ADU35189.1| S-adenosyl-methyltransferase MraW [Variovorax paradoxus EPS] Length = 307 Score = 332 bits (852), Expect = 5e-89, Method: Composition-based stats. Identities = 126/313 (40%), Positives = 179/313 (57%), Gaps = 16/313 (5%) Query: 15 HTIGDHVPVLLEKVIALL---NPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDP 68 +T H VLL + + L + A +DATFG GG++R+ +IA D+D Sbjct: 2 NTPWTHTTVLLNEAVEALLSGSTAATGTYVDATFGRGGHARAILARLAPEGRLIAFDKDA 61 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 AV+ E R +FS+ F L + +PD V+G++ DLGVSS QID RGFSF+ Sbjct: 62 EAVA---EAARISDARFSIRHQGFRSLGE-LPDASVNGLLMDLGVSSPQIDNPVRGFSFR 117 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA-PFQ 186 GPLDMRM + G S ++ + A ++ + ++ GEE+ A +IA AIV RRQ P Sbjct: 118 FDGPLDMRMDTTRGESVAEWLATAELQQIAEVIRDYGEERFAVQIAKAIVARRQERGPIS 177 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 TT +L+ L+ TV + + +PATR+FQA RIF+N E+EEL Q L ++ L+ GG L Sbjct: 178 TTTELAELVAGTVKTREQGQ-NPATRTFQAFRIFINAELEELQQALEASLSVLQPGGRLA 236 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+SFHSLEDR+VK+F A S +V R A P V + + + P++++V N RS Sbjct: 237 VISFHSLEDRIVKQFIAKHSKEVYDRRAPF---AAPKVMKLNALERIKPSEDEVRGNPRS 293 Query: 307 RSAKLRAGMRTVE 319 RSA LR RT Sbjct: 294 RSAILRVAERTEA 306 >gi|238060255|ref|ZP_04604964.1| S-adenosyl-methyltransferase mraW [Micromonospora sp. ATCC 39149] gi|237882066|gb|EEP70894.1| S-adenosyl-methyltransferase mraW [Micromonospora sp. ATCC 39149] Length = 366 Score = 332 bits (852), Expect = 5e-89, Method: Composition-based stats. Identities = 115/315 (36%), Positives = 181/315 (57%), Gaps = 11/315 (3%) Query: 18 GDHVPVLLEKVIALLNPAPGK----VILDATFGAGGYSRSFCKMGSN--VIALDRDPFAV 71 G HVPVLLE+ + LL PA + V +DAT G G++ + + + +I LDRD A+ Sbjct: 6 GTHVPVLLERCLELLAPALARGDRTVHVDATLGLAGHAEAVLERHPHTVLIGLDRDTEAL 65 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQ 128 + + + + ++ L A + +L + + G +DGV+FDLGVSS+Q+D DRGF++ Sbjct: 66 AHARVRLARFADRVHLEHAVYDELPEVLGRLGYPAIDGVLFDLGVSSLQLDAPDRGFAYA 125 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + PLDMRM + G++A +VVN + DL R+L + GEEK A RIA AI++ R+ A + Sbjct: 126 QDAPLDMRMDQTRGVTAEEVVNTYSHPDLARVLRVYGEEKFAPRIASAILRERERARITS 185 Query: 188 TQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 + L+ L+++++ ++ HPA R+FQALRI VN E+ L L +A L GG ++ Sbjct: 186 SARLAELVRESIPAPARRTGGHPAKRTFQALRIEVNRELAALETALPAALDKLTVGGRMV 245 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+S+HSLEDRL K R V + F+ +++ +P + +VA N R+ Sbjct: 246 VLSYHSLEDRLTKAALTDRVRSKGPVDLPVELPGSGPTFRLLSRGAELPGEAEVAANPRA 305 Query: 307 RSAKLRAGMRTVERS 321 S +LRA R + Sbjct: 306 ASVRLRAAERIDPEA 320 >gi|330994431|ref|ZP_08318356.1| Ribosomal RNA small subunit methyltransferase H [Gluconacetobacter sp. SXCC-1] gi|329758431|gb|EGG74950.1| Ribosomal RNA small subunit methyltransferase H [Gluconacetobacter sp. SXCC-1] Length = 319 Score = 332 bits (852), Expect = 5e-89, Method: Composition-based stats. Identities = 121/305 (39%), Positives = 172/305 (56%), Gaps = 14/305 (4%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSNVIALDRDPFAVSCGQETMR--- 79 +L +V+ L P G +D TFG GGY+R+ + +DRDP A++ GQ Sbjct: 2 MLAEVMDYLAPRDGGRYVDGTFGGGGYARAILASCACQLWGIDRDPAAIARGQALAHTCT 61 Query: 80 --DYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 D + L F+ + + + GV DG+V DLGVSS QID +RGFSF+ GPLD Sbjct: 62 APDGTPRLHLLHGGFAGMAALLAEAGVARVDGIVLDLGVSSYQIDQAERGFSFRMDGPLD 121 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRM +G +A+DVVN +L I+ GEE+ + R+A AIV R AP T L+ + Sbjct: 122 MRMGDTGPTAADVVNTLPEDELADIIYHYGEERLSRRVARAIVAARAEAPLLRTTQLADV 181 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 ++ V + + I PATR+FQ LRI VN+E+ ++ + L A + L GG L+VVSFHSLE Sbjct: 182 VRSVVRPDR-SGIDPATRTFQGLRIHVNDELGQIRRVLEEAPRLLAPGGRLVVVSFHSLE 240 Query: 255 DRLVKKFFASRSGKVMAVRHMIP----SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 DRLVK+ A +G+ A P A P F+ +T + + P +E+ N R+RSA+ Sbjct: 241 DRLVKQAMALAAGRTPAPSRHDPRAMTQRAGPTGFRLLTGRPIRPGEEETRRNPRARSAR 300 Query: 311 LRAGM 315 LRA Sbjct: 301 LRALE 305 >gi|242309935|ref|ZP_04809090.1| S-adenosyl-methyltransferase MraW [Helicobacter pullorum MIT 98-5489] gi|239523232|gb|EEQ63098.1| S-adenosyl-methyltransferase MraW [Helicobacter pullorum MIT 98-5489] Length = 311 Score = 332 bits (851), Expect = 5e-89, Method: Composition-based stats. Identities = 100/309 (32%), Positives = 174/309 (56%), Gaps = 16/309 (5%) Query: 19 DHVPVLLEKVIAL----LNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVS 72 H+ VL ++V+ L G +++D T G GG+S + + + I +D+D A++ Sbjct: 4 PHISVLKQEVLETFENELITKNGGILIDCTLGFGGHSLALLEKYPKLKIIGIDQDNDAIA 63 Query: 73 CGQETMRDYKEQFSLFQATFSQ-LQDYV-PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + ++K++FS+ FS+ L+ + ++ + G++ D+GVSSMQ D +RGFSF+ Sbjct: 64 LATKRLENFKDRFSIKYGKFSETLKTILSQEQNIVGILADIGVSSMQFDNKERGFSFESE 123 Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM + +A D++N ++ +L RI GE ++ ++AH I++ R+ + + Sbjct: 124 -TLDMRMDKTKNFNAKDIINTYSLPELERIFKNFGEIREYKKLAHCIIELRKKEKITSAK 182 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE-KALKAGGLLIVV 248 LS I + K+ +IHPAT +FQALRI VNNE+ EL + L+ E ++ G L ++ Sbjct: 183 MLSEFIARHF---KHPKIHPATLAFQALRIEVNNELGELERLLQIFETHKMQNGARLCII 239 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 SFHSLEDR++K +F + + + + +++ KK + +++ N RS Sbjct: 240 SFHSLEDRIIKTYFKKWENPCICPQEAMLCKCGKNHQKGKNLYKKPLTAKAQEIQENPRS 299 Query: 307 RSAKLRAGM 315 RSAKLRA Sbjct: 300 RSAKLRAFE 308 >gi|158316863|ref|YP_001509371.1| S-adenosyl-methyltransferase MraW [Frankia sp. EAN1pec] gi|263447093|sp|A8KZA9|RSMH_FRASN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|158112268|gb|ABW14465.1| S-adenosyl-methyltransferase MraW [Frankia sp. EAN1pec] Length = 327 Score = 332 bits (851), Expect = 5e-89, Method: Composition-based stats. Identities = 123/320 (38%), Positives = 183/320 (57%), Gaps = 10/320 (3%) Query: 20 HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 H PVL E+VI LL+P PG V++DAT G GG+S + + +I LDRD A+ Sbjct: 5 HTPVLTERVIQLLDPALRRPGAVVVDATVGLGGHSHALLEAFPQVRLIGLDRDTTALEHS 64 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + ++ L A + QL D + GV DGV+FDLGVSSMQ+D +RGF++ + Sbjct: 65 RRRLTGLGDRVDLEHAVYDQLPDVLDRLGVPSVDGVLFDLGVSSMQLDLDERGFAYSRDA 124 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM G +A+DV+N +V LTR+L GEE+ A RIA A+V +RQ+APF T+ Sbjct: 125 PLDMRMDQERGPTAADVLNNYDVDALTRVLREYGEERFARRIARAVVTQRQAAPFTTSAR 184 Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L L++ ++ + + +PA R+FQALRI VN+E+E L + + +A AL G L+V+S Sbjct: 185 LVDLVRDSIPAAARRTGGNPAKRTFQALRIEVNSELEVLERAVPAAFDALAVAGRLVVLS 244 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 +HSLEDRLVK+ RS + + + + +T+ + ++ N R+ S Sbjct: 245 YHSLEDRLVKRVLMPRSVPSVPPDMPVIPDDARPTLRWLTRGAEPASDTEIEQNARAGSV 304 Query: 310 KLRAGMRTVERSIEDDSFVH 329 +LRA RT + Sbjct: 305 RLRAAERTAAEPGRAHNPTG 324 >gi|118468497|ref|YP_888512.1| S-adenosyl-methyltransferase MraW [Mycobacterium smegmatis str. MC2 155] gi|262825134|sp|A0R024|RSMH_MYCS2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|118169784|gb|ABK70680.1| S-adenosyl-methyltransferase MraW [Mycobacterium smegmatis str. MC2 155] Length = 326 Score = 332 bits (851), Expect = 6e-89, Method: Composition-based stats. Identities = 119/327 (36%), Positives = 185/327 (56%), Gaps = 18/327 (5%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPA-----PGK---VILDATFGAGGYSRSFCKMGS- 59 M++ H H+PVLL++ + LL PA P V++DAT GAGG+S F Sbjct: 1 MTNDPDH---GHIPVLLDRCVELLAPALTRTDPDGTEAVLVDATLGAGGHSERFLTDFPA 57 Query: 60 -NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSS 115 +I LDRDP A++ + + + ++ +L + + + + + GV DGV+FDLGVSS Sbjct: 58 LRLIGLDRDPNALAIAGDRLAPFGDRVTLVRTRYDGITSALAEAGVRRIDGVLFDLGVSS 117 Query: 116 MQIDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAH 174 MQ+D RGFS+ PLDMRM + +A+++VN + K LTRIL GEE+ A RIA Sbjct: 118 MQLDQKQRGFSYSADAPLDMRMDPDALLTAAEIVNTYDAKTLTRILRDYGEERFAGRIAD 177 Query: 175 AIVKRRQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLR 233 IV+RR PF TT +L L+ + + ++ HPA R+FQALRI VN E++ L + Sbjct: 178 KIVRRRAKQPFTTTSELVELLYEAIPAPARRTGGHPAKRTFQALRIAVNAELDSLRAAIP 237 Query: 234 SAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV 293 +A AL+ GG ++V+++ SLEDR+VK+ F++ + + H F ++T+ Sbjct: 238 AALAALRPGGRIVVMAYQSLEDRIVKQAFSTVTASRTPPGLPMELPGHEPEFVAVTRGAE 297 Query: 294 VPTQEDVAFNRRSRSAKLRAGMRTVER 320 ++++ N RS +LRA + R Sbjct: 298 RADEQEIERNPRSAPVRLRALEKVGGR 324 >gi|328948458|ref|YP_004365795.1| ribosomal RNA small subunit methyltransferase H [Treponema succinifaciens DSM 2489] gi|328448782|gb|AEB14498.1| Ribosomal RNA small subunit methyltransferase H [Treponema succinifaciens DSM 2489] Length = 340 Score = 332 bits (851), Expect = 6e-89, Method: Composition-based stats. Identities = 103/308 (33%), Positives = 169/308 (54%), Gaps = 11/308 (3%) Query: 20 HVPVLLEKVIALLNP-----APGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVS 72 H PVLL + + L+P ++D+T G GG+S +F K + + LD D + Sbjct: 18 HTPVLLNECLKFLSPIGEPFEKDAFMIDSTLGEGGHSFNFLKKFPTLKILGLDADSVIQA 77 Query: 73 CGQETMRDYKEQFSLFQATFSQLQ-DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +E + ++ E+ + F+ +Y ++ D ++FDLG+S + RGFSF+ Sbjct: 78 RAKERLSEFGERMKFYNGWFNDFYCNYSEERKPDLILFDLGISVFHYEKSGRGFSFRHDE 137 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMR++ + SA+D+VN+ +L ++ + +EK + RIA AIV R+S +T+ Sbjct: 138 ELDMRLNADTKESATDIVNEMPEDELANMIYLYSDEKYSRRIASAIVSARKSQKIVSTKA 197 Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ +I V K IHPATR+FQALRI VN+E++ L + + +A L GG + V++ Sbjct: 198 LADIIFNAVPSKYKYGNIHPATRTFQALRILVNSELKRLPEAIHAAFNVLAPGGKIGVIT 257 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK +F + + + R + +T+K V P++E++ N SRS Sbjct: 258 FHSLEDRIVKNYFRNLGKQCVCPREFPECVCGGTPCAEILTRKPVEPSEEEIKANSPSRS 317 Query: 309 AKLRAGMR 316 AKLR + Sbjct: 318 AKLRVVRK 325 >gi|50842237|ref|YP_055464.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes KPA171202] gi|54036174|sp|Q6A9R0|RSMH_PROAC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|50839839|gb|AAT82506.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes KPA171202] gi|315107070|gb|EFT79046.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL030PA1] Length = 337 Score = 332 bits (851), Expect = 6e-89, Method: Composition-based stats. Identities = 110/321 (34%), Positives = 169/321 (52%), Gaps = 11/321 (3%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNP--APGK-VILDATFGAGGYSRSFCKMGSN--VIA 63 M++ + H+PV+ +++ LL G+ V +D T G GG++ + + + ++ Sbjct: 3 MATDAIGSDAVHIPVMRARILDLLAVVLKSGRRVHVDGTLGMGGHAEAVLRRFPDVELVG 62 Query: 64 LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDC 120 +DRD A++ + + + ++ L A +L + + D G VD V+ DLG+SS QID Sbjct: 63 IDRDQQALTMAEARLEPFADRVHLVHAVHDELPEVLDDLGLDYVDSVLLDLGLSSFQIDE 122 Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS+ PLDMRM S G +A+ ++N+++ L R+L GEEK A RI AIV Sbjct: 123 VERGFSYSVDSPLDMRMDQSSGRTAAQILNESDPGALVRMLREYGEEKFADRIVRAIVTE 182 Query: 180 RQSAPFQTTQDLSSLIQKTVYF--SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 R P +T+ L +I + + + HPA R+FQALRI VN E+E L L A Sbjct: 183 RDRQPIETSGRLVEIITEAIPATVRRKRHSHPAKRTFQALRIAVNREMETLPAVLPRALD 242 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297 L GG + V+S+HSLEDR VK+ F + + A F +T+ P Sbjct: 243 RLDVGGRIAVLSYHSLEDRPVKEAFRDACADTAPAGLPMVPESMAAKFNPVTRGAERPDA 302 Query: 298 EDVAFNRRSRSAKLRAGMRTV 318 ++VA N RS SA+LR R Sbjct: 303 DEVATNPRSASARLRVIERVR 323 >gi|305664541|ref|YP_003860828.1| S-adenosyl-methyltransferase MraW [Maribacter sp. HTCC2170] gi|88708558|gb|EAR00794.1| S-adenosyl-methyltransferase MraW [Maribacter sp. HTCC2170] Length = 297 Score = 332 bits (851), Expect = 6e-89, Method: Composition-based stats. Identities = 103/305 (33%), Positives = 167/305 (54%), Gaps = 17/305 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H PVLL++ + L+ V +D TFG GG+S+ K ++A D+D A+ Sbjct: 3 HNPVLLKESVEGLDVKKDGVYVDVTFGGGGHSKEILKRLGPKGRLLAFDQDEDALDN--- 59 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + E+F+L F ++ ++ G VDG++ D GVSS Q D +RGFS + L Sbjct: 60 --KLGDERFTLINENFRYIRQFLKFYGIRKVDGILADFGVSSHQFDKAERGFSTRFDADL 117 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRMS + +SA DVVN DL ++L G+ + A+ +A+ I+ R+ AP +T+ L Sbjct: 118 DMRMSKKNSVSAYDVVNSYEFNDLRKVLFQYGDLRNANAMANKIITSREEAPIKTSAQLK 177 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++++ + K ++I + +QA+RI VN EI+ + + L + L GG L V+S+HS Sbjct: 178 EVLRQFLPKHKEHKI--LAQIYQAIRIEVNQEIQVIKELLEQVPELLNLGGRLSVISYHS 235 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDRLVK+F + + + + P + + ++VP++E+ A N R+RSAKLR Sbjct: 236 LEDRLVKRFIRAGLFEGEPEKDFYGNIDVP--LKKV-GGLIVPSREETALNNRARSAKLR 292 Query: 313 AGMRT 317 R Sbjct: 293 IAERI 297 >gi|167912660|ref|ZP_02499751.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 112] Length = 313 Score = 332 bits (851), Expect = 6e-89, Method: Composition-based stats. Identities = 110/312 (35%), Positives = 172/312 (55%), Gaps = 19/312 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H VLL++ + L V +D TFG GG+SR+ +IA D+DP A+ + Sbjct: 7 HRTVLLDEAVDALVTRLDGVYVDGTFGRGGHSRAVLARLGDAGRLIAFDKDPRAIETAES 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +F + +F+ ++ + +G V GV+ DLGVSS Q+D RGFSF+ +GPL Sbjct: 67 I---EDARFEIVHDSFAAMKGALDARGIGRVSGVLLDLGVSSPQVDDPARGFSFRANGPL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS----APFQTT 188 DMRM + G SA++ + +A+V++LT ++ GEE+ A +IA AIV RR P +T Sbjct: 124 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRLGPLDST 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ ++ V + PATR+FQA+RI VN E+ +L L +A L+ GG L+V+ Sbjct: 184 GELAQIVGHVVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLEAALSLLEQGGRLVVI 242 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 SFHSLEDR+VK+F + + R + ++ + + + + P +VA N R+ Sbjct: 243 SFHSLEDRIVKRFLQAHASAPAVDRRLPIRAADLPRPPLKLLGR--MFPNDAEVAANPRA 300 Query: 307 RSAKLRAGMRTV 318 RSA +R R Sbjct: 301 RSAVMRIAERVA 312 >gi|328542958|ref|YP_004303067.1| ribosomal RNA small subunit methyltransferase H [polymorphum gilvum SL003B-26A1] gi|326412704|gb|ADZ69767.1| Ribosomal RNA small subunit methyltransferase H [Polymorphum gilvum SL003B-26A1] Length = 346 Score = 332 bits (851), Expect = 6e-89, Method: Composition-based stats. Identities = 142/292 (48%), Positives = 192/292 (65%), Gaps = 5/292 (1%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77 HVPVLL V+ L PA G+VI+D TFGAGGYSR+F + G+ VI +DRDP A++ GQ+ Sbjct: 17 ARHVPVLLSAVLDTLRPAEGEVIVDGTFGAGGYSRAFLEAGAAVIGVDRDPDAIAGGQDL 76 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 +R + L F+ L + G VDGVV DLGVSSMQID +RGFSF + GPLD Sbjct: 77 VRASGGRLVLVPGRFADLDAHARACGHEAVDGVVLDLGVSSMQIDQAERGFSFMRDGPLD 136 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 MRM +G SA+DVVN +DLTRI+G+LGEEK+A+ +A AI + R PF T +L+ L Sbjct: 137 MRMEQAGPSAADVVNTLPARDLTRIIGLLGEEKRAAAVARAISEARAEKPFTRTGELADL 196 Query: 195 IQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 +++ V K IHPATR+FQALRI+VN E+ + A+ L +AE+ L+ GG L+VVSFHSL Sbjct: 197 VERVVGRAPKKAHIHPATRTFQALRIYVNGELHQAAEALTAAERILRPGGRLVVVSFHSL 256 Query: 254 EDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 EDR+VK+F A R+ + RH+ + PA F+ + K V + + + N Sbjct: 257 EDRIVKRFLADRTRVRAGGSRHLPEAEVPPATFELLVKGAVEADEAETSANP 308 >gi|295130325|ref|YP_003580988.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes SK137] gi|291376254|gb|ADE00109.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes SK137] gi|313764743|gb|EFS36107.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL013PA1] gi|313791793|gb|EFS39904.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL110PA1] gi|313802120|gb|EFS43352.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL110PA2] gi|313807237|gb|EFS45724.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL087PA2] gi|313809743|gb|EFS47464.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL083PA1] gi|313813215|gb|EFS50929.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL025PA1] gi|313815808|gb|EFS53522.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL059PA1] gi|313818283|gb|EFS55997.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL046PA2] gi|313820045|gb|EFS57759.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL036PA1] gi|313823146|gb|EFS60860.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL036PA2] gi|313825577|gb|EFS63291.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL063PA1] gi|313827816|gb|EFS65530.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL063PA2] gi|313838452|gb|EFS76166.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL086PA1] gi|314915234|gb|EFS79065.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL005PA4] gi|314918537|gb|EFS82368.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL050PA1] gi|314919800|gb|EFS83631.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL050PA3] gi|314925467|gb|EFS89298.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL036PA3] gi|314931815|gb|EFS95646.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL067PA1] gi|314955971|gb|EFT00369.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL027PA1] gi|314958366|gb|EFT02469.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL002PA1] gi|314960282|gb|EFT04384.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL002PA2] gi|314963091|gb|EFT07191.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL082PA1] gi|314978268|gb|EFT22362.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL072PA2] gi|314987732|gb|EFT31823.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL005PA2] gi|314990211|gb|EFT34302.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL005PA3] gi|315077555|gb|EFT49613.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL053PA2] gi|315080339|gb|EFT52315.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL078PA1] gi|315084598|gb|EFT56574.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL027PA2] gi|315085934|gb|EFT57910.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL002PA3] gi|315088648|gb|EFT60624.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL072PA1] gi|315098257|gb|EFT70233.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL059PA2] gi|315101052|gb|EFT73028.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL046PA1] gi|315108244|gb|EFT80220.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL030PA2] gi|327332217|gb|EGE73954.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL096PA3] gi|327442839|gb|EGE89493.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL013PA2] gi|327451061|gb|EGE97715.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL087PA3] gi|327452857|gb|EGE99511.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL092PA1] gi|327453584|gb|EGF00239.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL083PA2] gi|328753094|gb|EGF66710.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL087PA1] gi|328753749|gb|EGF67365.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL020PA1] gi|328759161|gb|EGF72777.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL025PA2] gi|332675167|gb|AEE71983.1| ribosomal RNA small subunit methyltransferase H [Propionibacterium acnes 266] Length = 337 Score = 332 bits (851), Expect = 6e-89, Method: Composition-based stats. Identities = 110/321 (34%), Positives = 169/321 (52%), Gaps = 11/321 (3%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNP--APGK-VILDATFGAGGYSRSFCKMGSN--VIA 63 M++ + H+PV+ +++ LL G+ V +D T G GG++ + + + ++ Sbjct: 3 MATDAIGSDAVHIPVMRARILDLLAVVLKSGRRVHVDGTLGMGGHAEAVLRRFPDVELVG 62 Query: 64 LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDC 120 +DRD A++ + + + ++ L A +L + + D G VD V+ DLG+SS QID Sbjct: 63 IDRDQQALTMAEARLEPFADRVHLVHAVHDELPEVLDDLGLDYVDSVLLDLGLSSFQIDE 122 Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS+ PLDMRM S G +A+ ++N+++ L R+L GEEK A RI AIV Sbjct: 123 VERGFSYSVDSPLDMRMDQSSGRTAAQILNESDPGALVRMLREYGEEKFADRIVRAIVTE 182 Query: 180 RQSAPFQTTQDLSSLIQKTVYF--SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 R P +T+ L +I + + + HPA R+FQALRI VN E+E L L A Sbjct: 183 RDRQPIETSGRLVEIITEAIPATVRRKRHSHPAKRTFQALRIAVNREMETLPAVLPRALD 242 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297 L GG + V+S+HSLEDR VK+ F + + A F +T+ P Sbjct: 243 RLDVGGRIAVLSYHSLEDRPVKEAFRDACADTAPAGLPMVPESMAAKFNPVTRGAERPDA 302 Query: 298 EDVAFNRRSRSAKLRAGMRTV 318 ++VA N RS SA+LR R Sbjct: 303 DEVATNPRSASARLRVIERVR 323 >gi|150026102|ref|YP_001296928.1| S-adenosyl-methyltransferase MraW [Flavobacterium psychrophilum JIP02/86] gi|263447480|sp|A6H1A2|RSMH_FLAPJ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|149772643|emb|CAL44126.1| S-adenosyl-methyltransferase MraW [Flavobacterium psychrophilum JIP02/86] Length = 291 Score = 332 bits (851), Expect = 6e-89, Method: Composition-based stats. Identities = 98/300 (32%), Positives = 161/300 (53%), Gaps = 17/300 (5%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRD 80 +L++ + LN P V +D TFG GG+S+ + D+D A Sbjct: 1 MLKETVDGLNIKPDGVYVDVTFGGGGHSKEILSRLGPEGKLFGFDQDEDAWENAL----- 55 Query: 81 YKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 E+F+L Q F ++ ++ G VDG++ DLGVSS Q D +RGFS + LDMRM Sbjct: 56 PDERFTLIQENFRYIKRFLRFNGIKKVDGILADLGVSSHQFDVPERGFSTRFDAELDMRM 115 Query: 138 SC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 S + ++A ++VN+ + +L RI GE A IA AI++ R+ T+DL ++ Sbjct: 116 SKKNDLTAFNIVNEYDETNLRRIFAEYGELGNALAIARAIIEAREKEKIVNTEDLKQVLA 175 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 + + +K ++I + +Q++RI VN E++ L + L + + L GG L V+S+HSLEDR Sbjct: 176 RFLPNNKAHKI--LAQIYQSIRIEVNQEMDVLKEFLEQSLEVLDQGGRLSVISYHSLEDR 233 Query: 257 LVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 LVK+F + + + P F+ I K+++P+ +++ N R+RSAKLR + Sbjct: 234 LVKRFMKNGLFEGEPEKDFFGRFEVP--FKLI-GKMIIPSNQEIKINNRARSAKLRIAEK 290 >gi|308189974|ref|YP_003922905.1| S-adenosyl-methyltransferase [Mycoplasma fermentans JER] gi|319777256|ref|YP_004136907.1| s-adenosyl-methyltransferase mraw [Mycoplasma fermentans M64] gi|307624716|gb|ADN69021.1| S-adenosyl-methyltransferase [Mycoplasma fermentans JER] gi|318038331|gb|ADV34530.1| S-adenosyl-methyltransferase MraW [Mycoplasma fermentans M64] Length = 301 Score = 331 bits (850), Expect = 7e-89, Method: Composition-based stats. Identities = 107/306 (34%), Positives = 157/306 (51%), Gaps = 16/306 (5%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQ 75 H VLL++ I LN P + +D T G GG+S K +IA D+D FA+ + Sbjct: 3 NQHFSVLLQESIDALNIKPDGIYVDLTLGMGGHSSEILKRLDTGRLIAFDKDTFAIEESR 62 Query: 76 ETMRDYKE-QFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + K F L + F ++ + VDG++ DLG+SS Q+D +RGFS+ K+ Sbjct: 63 KRLSQIKSTNFQLIHSDFKNIKSELDKLNISQVDGIIADLGISSPQVDNDERGFSYNKNA 122 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM S + A VVN + L ++L E K A ++A AI+ +R P TT + Sbjct: 123 RLDMRMDQSQKLDAYYVVNNYSESQLEQLLRNYAEVKLARQVAKAIISKR---PITTTLE 179 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ +++ +P FQA+RI VNNE + L Q L+ A + LK L V++F Sbjct: 180 LAQVVRDAYPAKLVKLKNPNKAVFQAIRIEVNNEFDSLKQMLQDAIELLKPNTSLAVITF 239 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLED +VK FF S + + I V KV +PT ++ N+RSRSAK Sbjct: 240 HSLEDSIVKHFFGSLIKSKLPAKMPINEEKQYKV------KVFLPTNNELELNKRSRSAK 293 Query: 311 LRAGMR 316 LR + Sbjct: 294 LRVLKK 299 >gi|89256825|ref|YP_514187.1| S-adenosyl-methyltransferase MraW [Francisella tularensis subsp. holarctica LVS] gi|115315211|ref|YP_763934.1| S-adenosyl-methyltransferase [Francisella tularensis subsp. holarctica OSU18] gi|167009864|ref|ZP_02274795.1| S-adenosyl-methyltransferase [Francisella tularensis subsp. holarctica FSC200] gi|169656696|ref|YP_001429056.2| S-adenosyl-methyltransferase MraW [Francisella tularensis subsp. holarctica FTNF002-00] gi|254368107|ref|ZP_04984127.1| S-adenosyl-methyltransferase [Francisella tularensis subsp. holarctica 257] gi|254369709|ref|ZP_04985719.1| S-adenosyl-methyltransferase [Francisella tularensis subsp. holarctica FSC022] gi|290953521|ref|ZP_06558142.1| S-adenosyl-methyltransferase MraW [Francisella tularensis subsp. holarctica URFT1] gi|295313213|ref|ZP_06803872.1| S-adenosyl-methyltransferase MraW [Francisella tularensis subsp. holarctica URFT1] gi|122324792|sp|Q0BKT7|RSMH_FRATO RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|122500397|sp|Q2A265|RSMH_FRATH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263447878|sp|A7NDP7|RSMH_FRATF RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|89144656|emb|CAJ79980.1| S-adenosyl-methyltransferase [Francisella tularensis subsp. holarctica LVS] gi|115130110|gb|ABI83297.1| S-adenosyl-methyltransferase [Francisella tularensis subsp. holarctica OSU18] gi|134253917|gb|EBA53011.1| S-adenosyl-methyltransferase [Francisella tularensis subsp. holarctica 257] gi|157122668|gb|EDO66797.1| S-adenosyl-methyltransferase [Francisella tularensis subsp. holarctica FSC022] gi|164551764|gb|ABU62100.2| S-adenosyl-methyltransferase MraW [Francisella tularensis subsp. holarctica FTNF002-00] Length = 305 Score = 331 bits (850), Expect = 7e-89, Method: Composition-based stats. Identities = 118/309 (38%), Positives = 179/309 (57%), Gaps = 16/309 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76 H VLL++ I LN P + +DATFG GG+S++ +IA D+D A+S +E Sbjct: 1 MHYSVLLQESINDLNINPQGIYIDATFGRGGHSKAILNRLTTGRLIAFDKDLDAISYARE 60 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + F + A+F+ + DY +DG++ DLGVSS Q+D RGFSF +GP Sbjct: 61 NFQF--SNFEIVHASFASIYDYCLQHSLLGKIDGIIMDLGVSSPQLDNAARGFSFTHNGP 118 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTTQD 190 LDMRM S GI+AS + + +V DL+ I + GEE+ A +IA I +Q+ +TT + Sbjct: 119 LDMRMDVSKGITASQALEELSVYDLSYIFKVYGEERFAKKIALRIKDYIQQNGSIRTTLE 178 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ LI+ T+ K + +PATR FQALRI+VNNE+++L L + +K+GG + +SF Sbjct: 179 LAELIRATI--GKKEKKNPATRCFQALRIYVNNELKDLEALLENILAVIKSGGRIAAISF 236 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH---MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 HSLEDR+VK+ F++ + M+P ++ + ITKK ++++ N RSR Sbjct: 237 HSLEDRIVKQKFSALINPKQELNRITKMLPQDSSQIKLKWITKKS-KANEDELNQNVRSR 295 Query: 308 SAKLRAGMR 316 SA LR + Sbjct: 296 SAILRVVEK 304 >gi|72161506|ref|YP_289163.1| methyltransferase [Thermobifida fusca YX] gi|88909224|sp|Q47QX7|RSMH_THEFY RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|71915238|gb|AAZ55140.1| bacterial methyltransferase [Thermobifida fusca YX] Length = 330 Score = 331 bits (850), Expect = 8e-89, Method: Composition-based stats. Identities = 104/295 (35%), Positives = 169/295 (57%), Gaps = 10/295 (3%) Query: 20 HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 HVPV+LE+V+ LL P PG + +D T G GG++ + + ++ +DRD A+ Sbjct: 20 HVPVMLERVVELLAPALQQPGAIAVDGTLGLGGHAEALLRAHPGLRLVGVDRDTTALERA 79 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++ + Y ++ L A +S + + + G+D G++FDLGVSS Q+D +RGF++ Sbjct: 80 RQRLAPYADRIDLVHAVYSDIPRILDELGIDRVHGLLFDLGVSSPQLDEAERGFAYSYDA 139 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM +A+D+VN +LTRI + GEE+ A+RIA AIV++R P +TT Sbjct: 140 PLDMRMDRTQERTAADIVNTYPASELTRIFRVYGEERFAARIAQAIVRQRAKEPVRTTGV 199 Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ L++ + + + + HPA R+FQALRI VN+E+ L + L +A L G ++V+S Sbjct: 200 LADLVRSAIPAAARRSGGHPAKRAFQALRIEVNSELSILERALPAALSRLAVAGRIVVLS 259 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 +HSLEDR+ K+ S +P + +T+ +PT+++ A N Sbjct: 260 YHSLEDRITKRVLTELSTDSTPPGLPVPLPDRQPELRLLTRGAELPTEQETAANP 314 >gi|313772507|gb|EFS38473.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL074PA1] gi|313830652|gb|EFS68366.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL007PA1] gi|313833872|gb|EFS71586.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL056PA1] gi|314973654|gb|EFT17750.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL053PA1] gi|314976247|gb|EFT20342.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL045PA1] gi|314983544|gb|EFT27636.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL005PA1] gi|315096274|gb|EFT68250.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL038PA1] gi|327325910|gb|EGE67700.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL096PA2] gi|327446210|gb|EGE92864.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL043PA2] gi|327447807|gb|EGE94461.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL043PA1] gi|328760593|gb|EGF74161.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL099PA1] Length = 337 Score = 331 bits (850), Expect = 8e-89, Method: Composition-based stats. Identities = 110/321 (34%), Positives = 168/321 (52%), Gaps = 11/321 (3%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNP--APGK-VILDATFGAGGYSRSFCKMGSN--VIA 63 M++ + H+PV+ +++ LL G+ V +D T G GG++ + + + ++ Sbjct: 3 MATDAIGSDAVHIPVMRARILDLLAVVLKSGRRVHVDGTLGMGGHAEAVLRRFPDVELVG 62 Query: 64 LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDC 120 +DRD A++ + + + ++ L A +L + + D G VD V+ DLG+SS QID Sbjct: 63 IDRDQQALTMAEARLEPFADRVHLVHAVHDELPEVLDDLGLDYVDSVLLDLGLSSFQIDE 122 Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS+ PLDMRM S G +A+ ++N+++ L R+L GEEK A RI AIV Sbjct: 123 VERGFSYSVDSPLDMRMDQSSGRTAAQILNESDPGALVRMLREYGEEKFADRIVRAIVTE 182 Query: 180 RQSAPFQTTQDLSSLIQKTVYF--SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 R P +T+ L +I + + HPA R+FQALRI VN E+E L L A Sbjct: 183 RDRQPIETSGRLVEIITGAIPATVRRKRHSHPAKRTFQALRIAVNREMETLPAVLPRALD 242 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297 L GG + V+S+HSLEDR VK+ F + + A F +T+ P Sbjct: 243 RLDVGGRIAVLSYHSLEDRPVKEAFRDACADTAPAGLPMVPESMAAKFNPVTRGAERPDA 302 Query: 298 EDVAFNRRSRSAKLRAGMRTV 318 ++VA N RS SA+LR R Sbjct: 303 DEVATNPRSASARLRVIERVR 323 >gi|289449724|ref|YP_003474673.1| S-adenosyl-methyltransferase MraW [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184271|gb|ADC90696.1| S-adenosyl-methyltransferase MraW [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 362 Score = 331 bits (850), Expect = 8e-89, Method: Composition-based stats. Identities = 111/325 (34%), Positives = 172/325 (52%), Gaps = 10/325 (3%) Query: 8 TMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIAL 64 M HVPVLL + + L+ +D T G G+S + + G + A Sbjct: 28 AMREETRSLQFSHVPVLLTECLKALDLKANGTYVDCTAGGAGHSAAILQRLGSGGRLFAF 87 Query: 65 DRDPFAVSCGQETMRDYKEQFS--LFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQID 119 D+DP A + K + L A F+ L++ + + V DG++ DLGVSS Q+D Sbjct: 88 DKDPTARQAAAAKLAQVKTAATYELIAADFASLREELSKRNVFAVDGILADLGVSSPQLD 147 Query: 120 CGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178 G+RGF+++ GPLDMRM+ + G +A+D++ + LTRI+ GEE+ A+RIA A+VK Sbjct: 148 TGERGFAYRLEGPLDMRMNPTCGRTAADILRLEDQATLTRIMREYGEERYAARIAAAVVK 207 Query: 179 RRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 R++ P T +L LI K V + + + HPA R FQ+LRI VN+E+ L + L+ A Sbjct: 208 TRETKPLTGTGELVDLICKAVPAAARREKQHPAKRVFQSLRIAVNDELGALRKLLQQAPG 267 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297 LK G L++++FHSLEDRLVK+ F + + ++ +V + Sbjct: 268 LLKPDGHLVIITFHSLEDRLVKQAFRRWERPCRCPSGLPCVCGLASQGKADPPHGLVAGK 327 Query: 298 EDVAFNRRSRSAKLRAGMRTVERSI 322 ++A N RSRSA++R R + Sbjct: 328 TELAENPRSRSARVRVFRRNANPPL 352 >gi|319782840|ref|YP_004142316.1| S-adenosyl-methyltransferase MraW [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317168728|gb|ADV12266.1| S-adenosyl-methyltransferase MraW [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 344 Score = 331 bits (850), Expect = 8e-89, Method: Composition-based stats. Identities = 139/287 (48%), Positives = 189/287 (65%), Gaps = 3/287 (1%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77 H+PVLL +V+ L PA G +I+D TFGAGGY+R+ G++V+A+DRDP A++ G++ Sbjct: 22 ARHIPVLLAEVLEALVPAQGDLIIDGTFGAGGYTRAILATGASVVAIDRDPDAIAAGRDL 81 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 + L QA FS L ++V DG+V D+GVSSMQ+D +RGFSF+ GPLDMRM Sbjct: 82 EVQSGGRLRLVQAPFSTLDEHVE--SADGIVLDIGVSSMQLDQAERGFSFRADGPLDMRM 139 Query: 138 SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK 197 + SG+SA+DVVN DL RI G LGEE+ A RIA I RR+ PF+ T +L+ I+ Sbjct: 140 AQSGLSAADVVNSFKPGDLARIFGFLGEERHAGRIARMIEARREKRPFERTLELADAIET 199 Query: 198 TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRL 257 + + ++IHPATR FQALRIFVN+E+ ELA+ L +AE+ALK GG L VV+FHSLEDR+ Sbjct: 200 HIGRAPKDKIHPATRVFQALRIFVNDELGELAKALFAAERALKPGGRLAVVTFHSLEDRI 259 Query: 258 VKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 VK+F A R+ RH+ ++A A F+ V +VA N Sbjct: 260 VKRFIADRADVATGSRHLPEAHARTATFRKAGGG-VTAGDAEVAANP 305 >gi|326919741|ref|XP_003206136.1| PREDICTED: probable S-adenosyl-L-methionine-dependent methyltransferase METT5D1-like [Meleagris gallopavo] Length = 410 Score = 331 bits (850), Expect = 9e-89, Method: Composition-based stats. Identities = 137/359 (38%), Positives = 191/359 (53%), Gaps = 44/359 (12%) Query: 2 ESKSCKTMSSAIHHTIGD------HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC 55 E + K+ + + H+ + H+PV++E+VI L+P G+ LD TFGAGG+S + Sbjct: 51 EQTTQKSETKELLHSTENKNFGRLHIPVMVEEVINCLSPQSGQRFLDMTFGAGGHSTALL 110 Query: 56 KMGSNV--IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVV 108 + SN+ ALDRDP A Q+ Y +Q FSQ + + GV DGV+ Sbjct: 111 EKASNITIYALDRDPTAYKIAQQLSESYPKQIQALLGQFSQSEALLISSGVEPGTLDGVL 170 Query: 109 FDLGVSSMQIDCGDRGFSFQKSGPLDMRMS----CSGISASDVVNQANVKDLTRILGILG 164 D G SSMQ D +RGFS QK GPLDMRM +A+DVVN + + L IL G Sbjct: 171 LDAGCSSMQFDTPERGFSLQKDGPLDMRMDSDRYPDMPTAADVVNALDQQALASILRTYG 230 Query: 165 EEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSK--------NNRIHPATRSFQA 216 EEK A +IA AIV+ R P TQ L+S++ S H AT++FQ Sbjct: 231 EEKHAKKIASAIVQARSIYPITRTQQLASIVAGAFPASALYARKDLLQRPTHVATKTFQG 290 Query: 217 LRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF-------ASRSGKV 269 LRIFVN+E+ EL GL++AEK LK GG L+ +SFHSLEDR++K+F G Sbjct: 291 LRIFVNDELHELLIGLKTAEKFLKPGGRLVALSFHSLEDRIIKRFLHGIDMTEKYNLGSR 350 Query: 270 MAVRHMIPSNAHP------------AVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 +R + + + + + I KKV+ P +D+ N R+RSAKLRA ++ Sbjct: 351 QKIRRALKNCSKEENTQEFPHGKSNSKWTFIQKKVLTPQAKDILTNPRARSAKLRAAVK 409 >gi|260220007|emb|CBA27114.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Curvibacter putative symbiont of Hydra magnipapillata] Length = 311 Score = 331 bits (850), Expect = 9e-89, Method: Composition-based stats. Identities = 128/315 (40%), Positives = 170/315 (53%), Gaps = 21/315 (6%) Query: 15 HTIGDHVPVLLEKVIALL--------NPAPGKVILDATFGAGGYSRSFCKMG---SNVIA 63 H VLL + + L + A +DATFG GG+SRS +IA Sbjct: 2 EAPRTHTTVLLNEAVDALFSDGGTPFDAASLATYVDATFGRGGHSRSILSRLDASGRLIA 61 Query: 64 LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDR 123 DRDP AV+ +FS+ FS L +P V GV+ DLGVSS QID +R Sbjct: 62 FDRDPEAVAQA---ALITDPRFSIRHEGFSNLG-VLPSGSVGGVLMDLGVSSPQIDSPER 117 Query: 124 GFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GFSF+ GPLDMRM + G S + + A + + ++ GEE+ A IA AIV RRQ Sbjct: 118 GFSFRFEGPLDMRMDTTRGESVAQWLETAEINQIAEVIREYGEERFAGSIAKAIVARRQE 177 Query: 183 A-PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 P TT +L+ L+ TV + + +PATR+FQA RIF+N E+EEL Q L ++ + L+ Sbjct: 178 RGPISTTSELAQLVADTVKTREPGQ-NPATRTFQAFRIFINAELEELQQALDASLEVLQP 236 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 GG L V+SFHSLEDR+VK+F A S + R A P V + + P+ E+VA Sbjct: 237 GGRLAVISFHSLEDRIVKQFIAKHSKEEYDRRAPF---AAPKVMKLKALGRIKPSAEEVA 293 Query: 302 FNRRSRSAKLRAGMR 316 N RSRSA LR R Sbjct: 294 ANPRSRSAILRVAQR 308 >gi|146281460|ref|YP_001171613.1| S-adenosyl-methyltransferase MraW [Pseudomonas stutzeri A1501] gi|145569665|gb|ABP78771.1| S-adenosyl-methyltransferase MraW [Pseudomonas stutzeri A1501] Length = 293 Score = 331 bits (849), Expect = 9e-89, Method: Composition-based stats. Identities = 111/295 (37%), Positives = 165/295 (55%), Gaps = 14/295 (4%) Query: 35 APGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91 LD TFG GG+SR + ++ D+DP A++ GQ + +F + Q + Sbjct: 2 RADGRYLDGTFGRGGHSRLLLQQLGPNGQLLGFDKDPLAIATGQA-LAAEDGRFVVVQRS 60 Query: 92 FSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASD 146 F++L D V +G V G++ DLGVSS Q+D RGFSF GPLDMRM S G+SA++ Sbjct: 61 FAELGDEVAQRGWTGAVSGILLDLGVSSPQLDDPIRGFSFLNDGPLDMRMDPSRGVSAAE 120 Query: 147 VVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNR 206 + A+ ++ R+ GEE+ A R+A A+V+RR APF+ T DL+ ++ + + Sbjct: 121 WIASADEDEIARVFKDYGEERFAKRMARAVVQRRAEAPFERTADLAKVLTDANPAWEKGK 180 Query: 207 IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRS 266 PATR+FQ LRI +NNE+ +L +GL +A AL+ GG L+V+SFHSLEDR+VK+F + Sbjct: 181 -SPATRAFQGLRIHINNELGDLERGLDAALDALEVGGRLVVISFHSLEDRIVKQFMRRHA 239 Query: 267 G---KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318 + I A + I K ++ +V N RSRSA +R + Sbjct: 240 KGEADKLPRDLPIIPKAFEPRLKLI-GKPQYASEAEVKANPRSRSAVMRVAEKVR 293 >gi|314968074|gb|EFT12173.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL037PA1] Length = 337 Score = 331 bits (849), Expect = 1e-88, Method: Composition-based stats. Identities = 110/321 (34%), Positives = 169/321 (52%), Gaps = 11/321 (3%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNP--APGK-VILDATFGAGGYSRSFCKMGSN--VIA 63 M++ + H+PV+ +++ LL G+ V +D T G GG++ + + + ++ Sbjct: 3 MATDAIGSDAVHIPVMRARILDLLAVVLKSGRRVHVDGTLGMGGHAEAVLRRFPDVELVG 62 Query: 64 LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDC 120 +DRD A++ + + + ++ L A +L + + D G VD V+ DLG+SS QID Sbjct: 63 IDRDQQALTMAEARLEPFADRVHLVHAVHDELLEVLDDLGLDYVDSVLLDLGLSSFQIDE 122 Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS+ PLDMRM S G +A+ ++N+++ L R+L GEEK A RI AIV Sbjct: 123 VERGFSYSVDSPLDMRMDQSSGRTAAQILNESDPGALVRMLREYGEEKFADRIVRAIVTE 182 Query: 180 RQSAPFQTTQDLSSLIQKTVYF--SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 R P +T+ L +I + + + HPA R+FQALRI VN E+E L L A Sbjct: 183 RDRQPIETSGRLVEIITEAIPATVRRKRHSHPAKRTFQALRIAVNREMETLPAVLPRALD 242 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297 L GG + V+S+HSLEDR VK+ F + + A F +T+ P Sbjct: 243 RLDVGGRIAVLSYHSLEDRPVKEAFRDACADTAPAGLPMVPESMAAKFNPVTRGAERPDA 302 Query: 298 EDVAFNRRSRSAKLRAGMRTV 318 ++VA N RS SA+LR R Sbjct: 303 DEVATNPRSASARLRVIERVR 323 >gi|311895546|dbj|BAJ27954.1| putative S-adenosyl-L-methionine-dependent methyltransferase MraW [Kitasatospora setae KM-6054] Length = 322 Score = 330 bits (848), Expect = 1e-88, Method: Composition-based stats. Identities = 115/320 (35%), Positives = 182/320 (56%), Gaps = 12/320 (3%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIA 63 MS+ H+PV+LE+ + L PA PG V++DAT G GG+S + +IA Sbjct: 1 MST--DSPAPRHIPVMLERCLDALAPAISTPGAVVVDATLGLGGHSEALLTRFPDVRLIA 58 Query: 64 LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120 +DRDP A+ E + + ++ +L A + ++ + + V GV+FDLGVSSMQ+D Sbjct: 59 VDRDPRALELSAERLARFGDRATLVHAVYDEIPRVLDELDVPEVHGVLFDLGVSSMQLDE 118 Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 DRGF++ + PLDMRM + GISA++V+N DL RIL + GEE+ A +IA A+++ Sbjct: 119 ADRGFAYSQDAPLDMRMDQTRGISAAEVLNTYGHGDLARILKVYGEERFAGKIASAVLRE 178 Query: 180 RQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R+ PF + L L++ + + + +PA R+FQALRI VN E+E L + + A A Sbjct: 179 REREPFTNSARLVELVRNAIPAATRRTGGNPAKRTFQALRIEVNGELEVLDRAIPGALDA 238 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L GG ++V+S+ SLEDRLVK++F + + + + +T+ + T+E Sbjct: 239 LAVGGRIVVMSYQSLEDRLVKQYFQAGATSTAPPGLPVIPEELQPWLKLLTRGAELATEE 298 Query: 299 DVAFNRRSRSAKLRAGMRTV 318 ++ NRR+ +LR R Sbjct: 299 EIEENRRAAPVRLRVAERIR 318 >gi|289426145|ref|ZP_06427891.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes SK187] gi|289153310|gb|EFD02025.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes SK187] Length = 337 Score = 330 bits (848), Expect = 1e-88, Method: Composition-based stats. Identities = 110/321 (34%), Positives = 169/321 (52%), Gaps = 11/321 (3%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNP--APGK-VILDATFGAGGYSRSFCKMGSN--VIA 63 M++ + H+PV+ +++ LL G+ V +D T G GG++ + + + ++ Sbjct: 3 MATDAIGSDAVHIPVMRARILDLLAVVLKSGRRVHVDGTLGMGGHAEAVLRRFPDVELVG 62 Query: 64 LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDC 120 +DRD A++ + + + ++ L A +L + + D G VD V+ DLG+SS QID Sbjct: 63 IDRDQQALTMAEARLESFADRVHLVHAVHDELPEVLDDLGLDYVDSVLLDLGLSSFQIDE 122 Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS+ PLDMRM S G +A+ ++N+++ L R+L GEEK A RI AIV Sbjct: 123 VERGFSYSVDSPLDMRMDQSSGRTAAQILNESDPGALVRMLREYGEEKFADRIVRAIVTE 182 Query: 180 RQSAPFQTTQDLSSLIQKTVYF--SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 R P +T+ L +I + + + HPA R+FQALRI VN E+E L L A Sbjct: 183 RDRQPIETSGRLVEIITEAIPATVRRKRHSHPAKRTFQALRIAVNREMETLPAVLPRALD 242 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297 L GG + V+S+HSLEDR VK+ F + + A F +T+ P Sbjct: 243 RLDVGGRIAVLSYHSLEDRPVKEAFRDACADTAPAGLPMVPESMAAKFNPVTRGAERPDA 302 Query: 298 EDVAFNRRSRSAKLRAGMRTV 318 ++VA N RS SA+LR R Sbjct: 303 DEVATNPRSASARLRVIERVR 323 >gi|213961666|ref|ZP_03389932.1| S-adenosyl-methyltransferase MraW [Capnocytophaga sputigena Capno] gi|213955455|gb|EEB66771.1| S-adenosyl-methyltransferase MraW [Capnocytophaga sputigena Capno] Length = 304 Score = 330 bits (848), Expect = 1e-88, Method: Composition-based stats. Identities = 104/312 (33%), Positives = 160/312 (51%), Gaps = 17/312 (5%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPF 69 ++ H+PVLL++ + L P +D TFG GG+SR K + A D+ Sbjct: 1 MNDNSSYHIPVLLQQSVEGLAIKPNGTYVDVTFGGGGHSREILKHLGNEGRLFAFDQ--- 57 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFS 126 ++F+L Q F L+ Y+ GV DGV+ D GVSS Q D +RGFS Sbjct: 58 --DTDAAANAIADDRFTLIQQNFKYLRQYLRFYGVTQVDGVLGDFGVSSHQFDVAERGFS 115 Query: 127 FQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 + G LDMRM+ + +SA ++VN+ + +DL+R+ GE K A IA AI+ R P Sbjct: 116 TRFEGTLDMRMNQNATVSAKEIVNEYDEEDLSRLFFNYGELKNAKAIARAIINYRAQKPI 175 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 Q +L ++ + K N++ + +QA+RI VN E+E L L +K GG + Sbjct: 176 QLGSELQEAVKSFLPKFKENKV--LAQIYQAIRIEVNGEMEALESFLLQLPDVVKLGGRI 233 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 ++S+HSLEDR VK+F + + + + P F+ + ++ PT ++A N R Sbjct: 234 SLISYHSLEDRAVKRFIRDGQLEGTPEKDWFGNVSVP--FKKV-GGLITPTDSEIAMNNR 290 Query: 306 SRSAKLRAGMRT 317 +RSAKLR R Sbjct: 291 ARSAKLRIAERI 302 >gi|126435853|ref|YP_001071544.1| S-adenosyl-methyltransferase MraW [Mycobacterium sp. JLS] gi|262825143|sp|A3Q1M6|RSMH_MYCSJ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|126235653|gb|ABN99053.1| S-adenosyl-methyltransferase MraW [Mycobacterium sp. JLS] Length = 324 Score = 330 bits (848), Expect = 1e-88, Method: Composition-based stats. Identities = 121/318 (38%), Positives = 180/318 (56%), Gaps = 18/318 (5%) Query: 19 DHVPVLLEKVIALLNPA-----PGK---VILDATFGAGGYSRSFCKMGS--NVIALDRDP 68 +H+PVLL++ + LL PA P V++DAT GAGG++ F ++I LDRDP Sbjct: 2 EHIPVLLDRCVELLTPALTRRNPDGRGAVLVDATLGAGGHAHRFLSDLPGLHLIGLDRDP 61 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGF 125 A+ E + + ++ SL + + + D + GV G +FDLGVSSMQ+D +RGF Sbjct: 62 QALQIAGERLAPFGDRVSLVRTRYDGIDDALAQTGVAEVSGFLFDLGVSSMQLDRTERGF 121 Query: 126 SFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 S+ PLDMRM ++A+DVVN KD+TRIL GEE+ A+RIA IV+RR P Sbjct: 122 SYSADAPLDMRMDSDAPLTAADVVNTFAEKDITRILREFGEERFAARIAKHIVRRR---P 178 Query: 185 FQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 TT +L L+ + ++ HPA R+FQALRI VN+E++ L + +A AL+ GG Sbjct: 179 LNTTGELVELLYDAIPAPARRTGGHPAKRTFQALRIAVNSELDSLRAAIPAALGALETGG 238 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 ++V+++ SLEDR+VK FA+ + + H F ++T+ T E++ N Sbjct: 239 RIVVMAYQSLEDRIVKTEFAAATASRTPPGLPVELPGHEPEFVALTRGAERATPEEIERN 298 Query: 304 RRSRSAKLRAGMRTVERS 321 RS +LRA + R Sbjct: 299 PRSAPVRLRALEKVAGRP 316 >gi|254372569|ref|ZP_04988058.1| S-adenosyl-methyltransferase [Francisella tularensis subsp. novicida GA99-3549] gi|151570296|gb|EDN35950.1| S-adenosyl-methyltransferase [Francisella novicida GA99-3549] Length = 305 Score = 330 bits (848), Expect = 1e-88, Method: Composition-based stats. Identities = 118/309 (38%), Positives = 178/309 (57%), Gaps = 16/309 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76 H VLL++ I LN P + +DATFG GG+S++ +IA D+D A+S +E Sbjct: 1 MHYSVLLQESINDLNINPQGIYIDATFGRGGHSKAILNRLTTGRLIAFDKDLDAISYARE 60 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + F + A+F+ + DY +DG++ DLGVSS Q+D RGFSF +GP Sbjct: 61 NFQF--SNFEIVHASFASIYDYCLQHSLLGKIDGIIMDLGVSSPQLDNAARGFSFTHNGP 118 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTTQD 190 LDMRM S GI+AS + + +V DL+ I + GEE+ A +IA I +Q+ TT + Sbjct: 119 LDMRMDVSKGITASQALEELSVDDLSYIFKVYGEERFAKKIALRIKDYIQQNGSISTTLE 178 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ LI+ T+ K + +PATR FQALRI+VNNE+++L L + +K+GG + +SF Sbjct: 179 LAELIRATI--GKKEKKNPATRCFQALRIYVNNELKDLEALLENILAVIKSGGRIAAISF 236 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH---MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 HSLEDR+VK+ F++ + M+P ++ + ITKK ++++ N RSR Sbjct: 237 HSLEDRIVKQKFSALINPKQELNRITKMLPQDSSQIKLKWITKKS-KANEDELNQNVRSR 295 Query: 308 SAKLRAGMR 316 SA LR + Sbjct: 296 SAILRVVEK 304 >gi|282862166|ref|ZP_06271229.1| S-adenosyl-methyltransferase MraW [Streptomyces sp. ACTE] gi|282563191|gb|EFB68730.1| S-adenosyl-methyltransferase MraW [Streptomyces sp. ACTE] Length = 312 Score = 330 bits (848), Expect = 1e-88, Method: Composition-based stats. Identities = 117/309 (37%), Positives = 177/309 (57%), Gaps = 13/309 (4%) Query: 24 LLEKVIALLNPA------PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQ 75 +L++ + LL PA V++D T G GG+S + +IALDRD A+ Sbjct: 1 MLQRCLDLLAPALEATGPRPPVVVDCTLGLGGHSEALLSAFPEARLIALDRDKEALRLSG 60 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + Y ++ +L A + +L + + G V GV+FDLGVSSMQ+D DRGF++ + P Sbjct: 61 ERLAAYGDRATLVHAVYDELPEVLDRLGIPKVQGVLFDLGVSSMQLDEADRGFAYAQDAP 120 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + GI A++V+N +L RIL GEEKQA RI A+V+ R+ PF + L Sbjct: 121 LDMRMDQTTGIGAAEVLNTYPPGELVRILRAYGEEKQAKRIVSAVVREREKEPFSNSARL 180 Query: 192 SSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 LI+ ++ +K +PA R+FQALRI VN E+ L + + +A ++L GG + V+S+ Sbjct: 181 VELIRDSLPQAAKRTGGNPAKRTFQALRIEVNGELTVLERAIPAAVRSLAVGGRIAVLSY 240 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDRLVK+ A+ + + + + +T+ +PT+E+VA NRR+ A+ Sbjct: 241 HSLEDRLVKQVLAAGAANTAPPGLPVVPERYQPRLKLLTRGAELPTEEEVAENRRAAPAR 300 Query: 311 LRAGMRTVE 319 LR R E Sbjct: 301 LRGAERIRE 309 >gi|241664315|ref|YP_002982675.1| S-adenosyl-methyltransferase MraW [Ralstonia pickettii 12D] gi|262825232|sp|C6BEJ1|RSMH_RALP1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|240866342|gb|ACS64003.1| S-adenosyl-methyltransferase MraW [Ralstonia pickettii 12D] Length = 319 Score = 330 bits (848), Expect = 1e-88, Method: Composition-based stats. Identities = 113/323 (34%), Positives = 179/323 (55%), Gaps = 23/323 (7%) Query: 11 SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRD 67 + T H VLL++ + L + +D TFG GG+SR + G ++A D+D Sbjct: 2 TTQTSTGLRHQTVLLDEAVDALIWRDDGIYIDGTFGRGGHSRRILERLGPGGRLVAFDKD 61 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRG 124 P A++ +F++ +F+Q+ + +G V GV+ DLG+SS QID G+RG Sbjct: 62 PAAITEAG---TVEDARFAIEHDSFAQMAQCLDARGIERVAGVLLDLGISSPQIDEGERG 118 Query: 125 FSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR--- 180 FSF+ GPLDMRM + GI+A+ + +A+ +D+ R++ GEE+ A +IA AIV RR Sbjct: 119 FSFRMDGPLDMRMDTTRGITAAQWLAEADERDIARVIRDYGEERFAVQIAKAIVARRGQS 178 Query: 181 -QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 P T +L++L+ + V + PATR+FQALRI VN E+ +L GL++A L Sbjct: 179 GDRGPLDRTSELAALVAQAVKT-REKGQDPATRTFQALRIHVNQELADLETGLKAAFDRL 237 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPS------NAHPAVFQSITKKVV 293 + GG L+V+SFHSLEDR+VK+F + + + + + + + V Sbjct: 238 EQGGRLVVISFHSLEDRIVKRFMQALARPEQSAAPELRRAPLRAHELPAPQLRLLGR--V 295 Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316 P++ +V+ N R+RSA +R R Sbjct: 296 KPSEAEVSANPRARSAIMRVAER 318 >gi|255082159|ref|XP_002508298.1| predicted protein [Micromonas sp. RCC299] gi|226523574|gb|ACO69556.1| predicted protein [Micromonas sp. RCC299] Length = 363 Score = 330 bits (848), Expect = 1e-88, Method: Composition-based stats. Identities = 108/307 (35%), Positives = 165/307 (53%), Gaps = 17/307 (5%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77 HVPVL+ +V+ + + +D T GAGG++ + + + + Q Sbjct: 65 APHVPVLMRQVLDAFDGRSLRCYVDGTMGAGGHASAIIRAHPELRTFVGFDLRIHTVQSN 124 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 R +E+ + Q + D GVD ++ DLGVSSM +D +RGFSF GPLDMRM Sbjct: 125 FRHMRERLAELQ---------LADGGVDAILMDLGVSSMHLDTPERGFSFMNDGPLDMRM 175 Query: 138 SCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 S +SA+DVVN+ +++ R++ GEEK +A I R AP +TT+ L + Sbjct: 176 GPSAKMSAADVVNEWPEEEIARVIRDYGEEKHWRLLARRICDARGIAPIETTRQLVHALG 235 Query: 197 KT--VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 + V ++ IHPATR+FQ +RI VN E+ + + + +A AL GG L +++FHSLE Sbjct: 236 RIPGVKKGRSGGIHPATRTFQGIRIAVNEELAVVEEAIPAAVDALAPGGRLAIITFHSLE 295 Query: 255 DRLVKKFFASRSGKVMAVRHMI-----PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 D+LVK+ F + +G A + A P + + +T+K VV ++V N RSRSA Sbjct: 296 DKLVKRAFRTFAGIAPASDRPLSAWEPQPEAPPKIVKLVTRKPVVADDDEVGANARSRSA 355 Query: 310 KLRAGMR 316 KLR + Sbjct: 356 KLRVCEK 362 >gi|53803411|ref|YP_114850.1| S-adenosyl-methyltransferase MraW [Methylococcus capsulatus str. Bath] gi|115311584|sp|Q604V0|RSMH_METCA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|53757172|gb|AAU91463.1| S-adenosyl-methyltransferase MraW [Methylococcus capsulatus str. Bath] Length = 301 Score = 330 bits (848), Expect = 1e-88, Method: Composition-based stats. Identities = 115/304 (37%), Positives = 178/304 (58%), Gaps = 11/304 (3%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRD 80 +L +V+ +L P + +D TFG GG+SR+ + ++A+DRD AV+ T Sbjct: 1 MLSEVLEMLAVRPDGIYVDCTFGRGGHSRAILERLGPEGRLLAIDRDLEAVAAAGATGLS 60 Query: 81 YKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 +F + FS + +V +G VDG++ DLGVSS Q+D RGFSF ++GPLDMR Sbjct: 61 ADARFGIEHGRFSDVGRFVGARGWTGRVDGILMDLGVSSPQLDNARRGFSFLRAGPLDMR 120 Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M + +A++ + + + ++L R+L GEE+ A RIA A+V+ R+ P TT DL LI Sbjct: 121 MDPTQKTTAAEWLAEVSERELARVLRDYGEERFAGRIARAVVEERRRRPIVTTTDLVRLI 180 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + + F K+ HPATR+FQA+RI VN+E+ +L QGL A + L AGG L+V+SFHSLED Sbjct: 181 EAAIPF-KDKFKHPATRTFQAIRIAVNDELGQLQQGLNEAVEVLAAGGRLVVISFHSLED 239 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 R+VK+F + + + + P + ++ K + +++ N R+RSA LRA Sbjct: 240 RIVKRFMRDEARGREMAGGIFETRSCPRL--AVLGKPLKAGDDEIRINPRARSALLRAAE 297 Query: 316 RTVE 319 + Sbjct: 298 KRAA 301 >gi|320352815|ref|YP_004194154.1| S-adenosyl-methyltransferase MraW [Desulfobulbus propionicus DSM 2032] gi|320121317|gb|ADW16863.1| S-adenosyl-methyltransferase MraW [Desulfobulbus propionicus DSM 2032] Length = 306 Score = 330 bits (848), Expect = 2e-88, Method: Composition-based stats. Identities = 97/301 (32%), Positives = 166/301 (55%), Gaps = 25/301 (8%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRD 80 +L++V+ L P P + +D T G GG++++ + V+ + D A ++ + Sbjct: 1 MLDEVLHWLQPRPNALYVDGTLGLGGHAQAILEQTAPSGRVVGFEWDDDAAQAARQRLSG 60 Query: 81 YKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 Y ++ S+ ++ L + GV +G++ DLGVSS+Q+D +RGFSF+ LDMRM Sbjct: 61 YGDRLSIVHGSYGDLVPELAKLGVVEIEGLLVDLGVSSLQLDRAERGFSFRTDSVLDMRM 120 Query: 138 SC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 S ++A+ ++ QA+ + L I GEE+QA RIA + + R+ P TT L++++ Sbjct: 121 DRRSPLTAASLIAQASEEQLADIFYHYGEERQARRIARFLAEAREKEPVATTGRLAAIVA 180 Query: 197 KTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + V ++H AT+ FQALRI VN E+ L + L++A + L G + +++FHSLED Sbjct: 181 EAVPRKYHPAKVHVATKVFQALRIAVNGELNNLTRLLQTAPQVLAEGARVCIITFHSLED 240 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 R+VK+ F + ++ +T++ V P+ E++ N R+RSAKLR Sbjct: 241 RIVKQAFQNN-----------------PAYEVVTRRPVEPSAEEIRRNPRARSAKLRVAR 283 Query: 316 R 316 R Sbjct: 284 R 284 >gi|187932019|ref|YP_001892004.1| S-adenosyl-methyltransferase MraW [Francisella tularensis subsp. mediasiatica FSC147] gi|263447507|sp|B2SDL2|RSMH_FRATM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|187712928|gb|ACD31225.1| S-adenosyl-methyltransferase MraW [Francisella tularensis subsp. mediasiatica FSC147] Length = 305 Score = 330 bits (848), Expect = 2e-88, Method: Composition-based stats. Identities = 118/309 (38%), Positives = 179/309 (57%), Gaps = 16/309 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76 H VLL++ I LN P + +DATFG GG+S++ +IA D+D A+S +E Sbjct: 1 MHYSVLLQESINDLNINPQGIYIDATFGRGGHSKAILNRLTTGRLIAFDKDLDAISYARE 60 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + F + A+F+ + DY +DG++ DLGVSS Q+D RGFSF +GP Sbjct: 61 NFQF--SNFEIVHASFASIYDYCLQHSLLGKIDGIIMDLGVSSPQLDNAARGFSFTHNGP 118 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTTQD 190 LDMRM S GI+AS + + +V DL+ I + GEE+ A +IA I +Q+ +TT + Sbjct: 119 LDMRMDVSKGITASQALEELSVDDLSYIFKVYGEERFAKKIALRIKDYIQQNGSIRTTLE 178 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ LI+ T+ K + +PATR FQALRI+VNNE+++L L + +K+GG + +SF Sbjct: 179 LAELIRATI--GKKEKKNPATRCFQALRIYVNNELKDLEALLENILAVIKSGGRIAAISF 236 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH---MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 HSLEDR+VK+ F++ + M+P ++ + ITKK ++++ N RSR Sbjct: 237 HSLEDRIVKQKFSALINPKQELNRITKMLPQDSSQIKLKWITKKS-KANEDELNQNVRSR 295 Query: 308 SAKLRAGMR 316 SA LR + Sbjct: 296 SAILRVVEK 304 >gi|325473769|gb|EGC76957.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Treponema denticola F0402] Length = 315 Score = 330 bits (847), Expect = 2e-88, Method: Composition-based stats. Identities = 101/306 (33%), Positives = 159/306 (51%), Gaps = 8/306 (2%) Query: 20 HVPVLLEKVIALLNPA-PGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76 H VLLE+ + L P + +D T G GG++ +F K + I +D D +E Sbjct: 5 HTSVLLEECLEFLKPDVSDNLFVDGTLGEGGHTEAFLKRYPQLNAIGVDADVSIQERAKE 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV--DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++ + E+ + P + ++ DLG+S RGFSF PLD Sbjct: 65 RLKPFGERIRFHLGWSDEFFKNYPKDSAPPNLILLDLGISMFHYVKSGRGFSFSSDEPLD 124 Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MR++ +SA+D+VN N KDL ++ GEE+ + +IA IV++R +A F T ++L+ Sbjct: 125 MRLNPELRLSAADIVNSYNEKDLADLIFNYGEERYSRKIASRIVEQRAAAAFSTAKELAD 184 Query: 194 LIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 I K V + ++ +IHPAT++FQALRI VN E++ L + L +A L G L +++FHS Sbjct: 185 CIYKAVPQNYRHGKIHPATKTFQALRIAVNGELDRLPRLLEAAFSVLAPNGRLGLITFHS 244 Query: 253 LEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK +F + I + +TKK V + E++ N SRSA+L Sbjct: 245 LEDRIVKFYFKELGKSCTCPENMPICKCGGRPRAEVLTKKAVKASDEEIRLNPPSRSARL 304 Query: 312 RAGMRT 317 R + Sbjct: 305 RVVRKI 310 >gi|300112935|ref|YP_003759510.1| S-adenosyl-methyltransferase MraW [Nitrosococcus watsonii C-113] gi|299538872|gb|ADJ27189.1| S-adenosyl-methyltransferase MraW [Nitrosococcus watsonii C-113] Length = 318 Score = 330 bits (847), Expect = 2e-88, Method: Composition-based stats. Identities = 115/317 (36%), Positives = 180/317 (56%), Gaps = 11/317 (3%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M + H PVLL +VI L + +D TFG GG++++ ++ +D Sbjct: 1 MDKNKTSSSHQHQPVLLREVIQALAIRRDGIYIDGTFGRGGHAQAILAALSSEGRLLGVD 60 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCG 121 +DP A++ G + +F++ QA+ L V ++G ++G +FDLGVSS Q++ Sbjct: 61 KDPAAIAAGHALAQK-DGRFTIVQASIGDLARVVSERGWLRKINGALFDLGVSSPQLENA 119 Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF + GPLDMRM+ + G SA++ + A K++ +L + GEE+ RIA AI++ R Sbjct: 120 ERGFSFLQDGPLDMRMNPAVGQSAAEWLANAKEKEIAEVLRVYGEERYCRRIARAIIQAR 179 Query: 181 QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 T+ L+ ++ K + RIHPATRSFQA+RIF+N+E+EEL L A AL Sbjct: 180 GLNSLTRTKQLAEVVAKAIP-RWERRIHPATRSFQAIRIFINHELEELRAALEQALAALA 238 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 G L V+SFHSLEDR+VK+FF ++ G+ + + + + K + P E+ Sbjct: 239 VKGRLAVISFHSLEDRIVKRFFREKARGEDLPLDLPVMQEDFQQASLKVLGKPIWPVPEE 298 Query: 300 VAFNRRSRSAKLRAGMR 316 +A N R+RSA+LR + Sbjct: 299 IAHNPRARSARLRVAEK 315 >gi|258649007|ref|ZP_05736476.1| S-adenosyl-methyltransferase MraW [Prevotella tannerae ATCC 51259] gi|260850623|gb|EEX70492.1| S-adenosyl-methyltransferase MraW [Prevotella tannerae ATCC 51259] Length = 312 Score = 330 bits (847), Expect = 2e-88, Method: Composition-based stats. Identities = 108/319 (33%), Positives = 167/319 (52%), Gaps = 18/319 (5%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 M+ A H+PVLL+ + LN P +D TFG GG+SR + ++A D Sbjct: 1 MTDAAPD---YHIPVLLQTTVDGLNVRPDGCYVDCTFGGGGHSREILRRLGPNGRLLAFD 57 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGD 122 +D A Q + +++ + Q+ F L +++ G VDG++ DLGVSS D D Sbjct: 58 QDADA----QRNIPAGEDRLTFVQSNFRYLPNWLHYYGYAQVDGILADLGVSSHHFDAAD 113 Query: 123 RGFSFQKSGPLDMRMSCSGIS-ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF+ G LDMRM+ + A+ VVN + + L + + GE R+A AI+K R Sbjct: 114 RGFSFRFEGALDMRMNKRAHTSAAGVVNTYSEEQLANLFYLYGELNNGRRLAAAIIKARA 173 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 +AP + + L ++ + ++ + + FQALRI VN+E+E L L +A LK Sbjct: 174 AAPIERVEQLVDVVTPYLGAARAKK--DMAKVFQALRIEVNHEMEALEAMLTAALTLLKP 231 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 GG L ++++HSLEDRLVK F + + + + P + + +V+ P + ++ Sbjct: 232 GGRLAILTYHSLEDRLVKNFIKAGNATGKVEQDFYGNRLAP--MKPVNGRVIRPDEAEMN 289 Query: 302 FNRRSRSAKLRAGMRTVER 320 N RSRSAKLR G ER Sbjct: 290 ANPRSRSAKLRIGECIAER 308 >gi|94676738|ref|YP_588954.1| S-adenosyl-methyltransferase MraW [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|263445957|sp|Q1LSW0|RSMH_BAUCH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|94219888|gb|ABF14047.1| S-adenosyl-methyltransferase MraW [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 317 Score = 330 bits (847), Expect = 2e-88, Method: Composition-based stats. Identities = 118/314 (37%), Positives = 183/314 (58%), Gaps = 22/314 (7%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H+PVLL + + LN + +D TFG GG+SR ++A+DRDP A++ G+ Sbjct: 7 KHIPVLLNEAVTALNIKKDGIYIDGTFGRGGHSRLILSKLGNKGRLLAIDRDPAAIAAGR 66 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +F++ Q FS + DY+ + +DG++ DLG+SS Q+ DRGFSF+ +G Sbjct: 67 NI---HDLRFTIVQRPFSTIADYIAELNLIGCIDGILLDLGISSPQLADPDRGFSFRHNG 123 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM + GISA + + QA+V+++T +L GEE+ A RI+ AI + + +T + Sbjct: 124 KLDMRMDTTCGISAREWLKQASVQEMTWVLQHFGEERFAKRISQAIFHQNRRRLITSTSE 183 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ LI V +S ++ HPATRSFQA+RI++NNE++E+ Q L SA L GG L+V+SF Sbjct: 184 LAKLITTIVPWSNKHK-HPATRSFQAIRIYINNELKEIEQVLNSALNILAIGGKLVVISF 242 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPA--------VFQSITKKVVVPTQEDVAF 302 HSLEDRLVK F S + + + A +++ K + P+ +++ Sbjct: 243 HSLEDRLVKYFINKHSKLPLPPTGISLTEKQIADLYKNRHLTLKNLGK--IRPSIQEIKV 300 Query: 303 NRRSRSAKLRAGMR 316 N R+RSA LR + Sbjct: 301 NPRARSALLRFAEK 314 >gi|212715550|ref|ZP_03323678.1| hypothetical protein BIFCAT_00448 [Bifidobacterium catenulatum DSM 16992] gi|212660917|gb|EEB21492.1| hypothetical protein BIFCAT_00448 [Bifidobacterium catenulatum DSM 16992] Length = 343 Score = 330 bits (847), Expect = 2e-88, Method: Composition-based stats. Identities = 109/307 (35%), Positives = 160/307 (52%), Gaps = 11/307 (3%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCG 74 H PVLL + L+ PA PG + +D T G G+S +F K + +I +DRD A++ Sbjct: 8 HQPVLLRDCVDLVAPALANPGSIAVDCTLGLAGHSTAFLKASPHARLIGIDRDTEALALA 67 Query: 75 QETM--RDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQK 129 + M ++F A F + D+G+D V DLG+SS+QID +RGFS+ Sbjct: 68 TQRMQMEGLADRFIPVHAAFDDFAQVLDDQGIDQVNAVFMDLGLSSLQIDETERGFSYSH 127 Query: 130 SGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM ++A V+ + DL RI GEE+ + +IA AIV+RR+ P T+ Sbjct: 128 DAPLDMRMDVTQPLTAEQVLADYSFADLARIFRTYGEERFSKQIARAIVRRREIEPLTTS 187 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ L+ + V + +PA R FQALRI VN E+++LA L L GG L+V Sbjct: 188 GQLNRLVDEVVPQAHRPAGNPAKRVFQALRIEVNGELDKLAGTLPQIANHLAVGGRLVVE 247 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 S+HSLED+ VK F + + F+ +T+ + E++A N RS S Sbjct: 248 SYHSLEDKTVKTFMNQGLKADVPADMPVIPPDMMPFFKELTRGAIKAGDEEIAMNPRSAS 307 Query: 309 AKLRAGM 315 +LRA Sbjct: 308 VRLRAVE 314 >gi|118497204|ref|YP_898254.1| S-adenosylmethionine-dependent methyltransferase [Francisella tularensis subsp. novicida U112] gi|254374028|ref|ZP_04989510.1| S-adenosyl-methyltransferase [Francisella novicida GA99-3548] gi|263447525|sp|A0Q5I5|RSMH_FRATN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|118423110|gb|ABK89500.1| S-adenosylmethionine-dependent methyltransferase [Francisella novicida U112] gi|151571748|gb|EDN37402.1| S-adenosyl-methyltransferase [Francisella novicida GA99-3548] gi|328676676|gb|AEB27546.1| S-adenosyl-methyltransferase MraW [Francisella cf. novicida Fx1] Length = 305 Score = 330 bits (847), Expect = 2e-88, Method: Composition-based stats. Identities = 118/309 (38%), Positives = 178/309 (57%), Gaps = 16/309 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76 H VLL++ I LN P + +DATFG GG+S++ +IA D+D A+S +E Sbjct: 1 MHYSVLLQESINDLNINPQGIYIDATFGRGGHSKAILNRLTTGRLIAFDKDLDAISYARE 60 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + F + A+F+ + DY +DG++ DLGVSS Q+D RGFSF +GP Sbjct: 61 NFQF--SNFEIVHASFASIYDYCLQHSLLGKIDGIIMDLGVSSPQLDNAARGFSFTHNGP 118 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTTQD 190 LDMRM S GI+AS + + +V DL+ I + GEE+ A +IA I +Q+ TT + Sbjct: 119 LDMRMDVSKGITASQALEELSVDDLSYIFKVYGEERFARKIALRIKDYIQQNGSISTTLE 178 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ LI+ T+ K + +PATR FQALRI+VNNE+++L L + +K+GG + +SF Sbjct: 179 LAELIRATI--GKKEKKNPATRCFQALRIYVNNELKDLEALLENILAVIKSGGRIAAISF 236 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH---MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 HSLEDR+VK+ F++ + M+P ++ + ITKK ++++ N RSR Sbjct: 237 HSLEDRIVKQKFSALINPKQELNRITKMLPQDSSQIKLKWITKKS-KANEDELNQNVRSR 295 Query: 308 SAKLRAGMR 316 SA LR + Sbjct: 296 SAILRVVEK 304 >gi|148695830|gb|EDL27777.1| methyltransferase 5 domain containing 1, isoform CRA_a [Mus musculus] gi|148695831|gb|EDL27778.1| methyltransferase 5 domain containing 1, isoform CRA_a [Mus musculus] Length = 339 Score = 330 bits (847), Expect = 2e-88, Method: Composition-based stats. Identities = 134/334 (40%), Positives = 185/334 (55%), Gaps = 37/334 (11%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 H+PV++++V+ L P G+V LD TFG+GG++R+ + +V ALDRDP A + ++ Sbjct: 5 HIPVMVDQVVHCLAPQKGQVFLDMTFGSGGHTRAILQKEPDVMVYALDRDPVAYAIAEQL 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 R Y Q FSQ + + GV DG++ DLG SSMQ+D +RGFS +K GP Sbjct: 65 SRLYPTQIQALLGQFSQAEALLMKAGVQPGTIDGILMDLGCSSMQLDAPERGFSLRKDGP 124 Query: 133 LDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM +ASDVVN + + L IL GEEK A +IA AI++ R + P T Sbjct: 125 LDMRMDGDRYPDTPTASDVVNALDQQALASILRAYGEEKHAKKIASAIIQARSTYPISRT 184 Query: 189 QDLSSLIQKTVYFSK--------NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 Q L+S++ S H AT++FQALRIFVNNE+ EL GLR+AEK LK Sbjct: 185 QQLASIVAGAFPPSAVYARKDLLQRSTHIATKTFQALRIFVNNELNELYAGLRTAEKFLK 244 Query: 241 AGGLLIVVSFHSLEDRLVKKF-------------FASRSGKVMAVRHMIPSNAH-----P 282 GG L+ +SFHSLEDR+VK+F + + + + P Sbjct: 245 TGGRLVALSFHSLEDRIVKRFLLGISMTERFNLSIRQKVKQTSQLDSDQETEERHSVRAP 304 Query: 283 AVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 ++ I KKV+ P +DV N R RSAKLRA ++ Sbjct: 305 LKWELIHKKVLTPEDQDVQDNPRGRSAKLRAAIK 338 >gi|148273048|ref|YP_001222609.1| S-adenosyl-methyltransferase MraW [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|263446039|sp|A5CS59|RSMH_CLAM3 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|147830978|emb|CAN01923.1| putative S-adenosyl-methyltransferase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 318 Score = 330 bits (846), Expect = 2e-88, Method: Composition-based stats. Identities = 109/299 (36%), Positives = 163/299 (54%), Gaps = 9/299 (3%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 H PVLLE+ + LL PA G V++DAT G G+S +F ++ LDRDP A++ Sbjct: 7 HTPVLLERCLELLAPALQGEGAVLVDATLGMAGHSEAFLDALPGLRLVGLDRDPDALAIA 66 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E + + ++ +L + + + G V GV FDLGVSS+Q+D +RGFS+ + Sbjct: 67 GERLARFGDRVNLVHTVYDGIGRALDGLGIGEVQGVFFDLGVSSLQLDRVERGFSYSQDA 126 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM +G++A+ VV + + +L RI GEEK A R A IV+ R+ P T+ Sbjct: 127 PLDMRMDGTAGLTAAQVVAEYDELELRRIFYDYGEEKLAPRYASRIVQAREVEPITTSAR 186 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L +IQ+ + HPA R FQALRI VN E+ LA+ + +A L GG ++V S+ Sbjct: 187 LVEIIQQATPAAVQRAGHPAKRVFQALRIEVNQELSVLARAMPAAVDRLAVGGRVVVESY 246 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK+ +RS V + H + + + + Q ++A N R+ S Sbjct: 247 QSLEDRIVKRELRARSTSTAPVGLPVELPEHRPELKLLVRGAELADQHEIAQNPRAASV 305 >gi|188997242|ref|YP_001931493.1| S-adenosyl-methyltransferase MraW [Sulfurihydrogenibium sp. YO3AOP1] gi|262825725|sp|B2V5J5|RSMH_SULSY RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|188932309|gb|ACD66939.1| S-adenosyl-methyltransferase MraW [Sulfurihydrogenibium sp. YO3AOP1] Length = 293 Score = 330 bits (846), Expect = 2e-88, Method: Composition-based stats. Identities = 110/306 (35%), Positives = 181/306 (59%), Gaps = 22/306 (7%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76 +H VL ++V+ G+V +DAT G GG+S K N+ I LD+D +A+ +E Sbjct: 3 EHYSVLHKEVLEFSKLIEGEVFVDATVGGGGHSYLILKQNLNLKLIGLDKDDYALKVAKE 62 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +++++++ +L +++F L + K ++G++FD GVS+ Q+ +RGFSFQ+ L Sbjct: 63 RLKEFEDRITLVKSSFKDLDKVLQSLQIKEINGILFDFGVSTFQLKL-ERGFSFQREEFL 121 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + ++A D+VN +DL I+ GEEK AS+IA +IV+ R+ +TT++L+ Sbjct: 122 DMRMDTTQKLTAYDIVNYYREQDLYNIIKTYGEEKFASKIAKSIVEYRKKKKIETTKELA 181 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++ + + ++ +IHPATR+FQA+RI VNNE++++ +GL A L G+++ +SFH Sbjct: 182 DIVYRCYPPNLRHGKIHPATRTFQAIRIEVNNELKDIEEGLEKAINLLAKNGIIMAISFH 241 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+VK F + +TKK + P+ E++ N SRSAKL Sbjct: 242 SLEDRIVKNMFKKYK--------------ELKFLEILTKKPITPSDEEIKENPASRSAKL 287 Query: 312 RAGMRT 317 R G R Sbjct: 288 RVGRRI 293 >gi|170781760|ref|YP_001710092.1| S-adenosyl-methyltransferase MraW [Clavibacter michiganensis subsp. sepedonicus] gi|263446044|sp|B0RI49|RSMH_CLAMS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|169156328|emb|CAQ01476.1| S-adenosyl-methyltransferase [Clavibacter michiganensis subsp. sepedonicus] Length = 318 Score = 330 bits (846), Expect = 2e-88, Method: Composition-based stats. Identities = 109/299 (36%), Positives = 161/299 (53%), Gaps = 9/299 (3%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 H PVLLE+ + LL PA G V++DAT G G+S +F ++ LDRDP A++ Sbjct: 7 HTPVLLERCLELLAPALQGEGAVLVDATLGMAGHSEAFLDALPGLRLVGLDRDPDALAIA 66 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E + + ++ L + + + G V GV FDLGVSS+Q+D +RGFS+ + Sbjct: 67 GERLARFGDRVHLVHTVYDGIGRALDGLGIGEVQGVFFDLGVSSLQLDRVERGFSYSQDA 126 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM +G++A+ VV + + +L RI GEEK A R A IV+ R+ P T+ Sbjct: 127 PLDMRMDGTAGLTAAQVVAEYDELELRRIFYDYGEEKLAPRYASRIVQAREVEPITTSAR 186 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L +IQ+ + HPA R FQALRI VN E+ LA+ + +A L GG ++V S+ Sbjct: 187 LVEIIQQATPAAVQRAGHPAKRVFQALRIEVNQELSVLARAMPAAIDRLAVGGRVVVESY 246 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK+ RS V + H + + + + Q ++A N R+ S Sbjct: 247 QSLEDRIVKRELRVRSTSTAPVGLPVELPEHRPELKLLVRGAELADQHEIAQNPRAASV 305 >gi|91216023|ref|ZP_01252992.1| S-adenosyl-methyltransferase MraW [Psychroflexus torquis ATCC 700755] gi|91186000|gb|EAS72374.1| S-adenosyl-methyltransferase MraW [Psychroflexus torquis ATCC 700755] Length = 303 Score = 330 bits (846), Expect = 2e-88, Method: Composition-based stats. Identities = 103/304 (33%), Positives = 165/304 (54%), Gaps = 17/304 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H+PVLL++ + ++ P +D TFG GG+S + A D+D A E Sbjct: 9 HLPVLLKESVDGMSIQPEGTYVDVTFGGGGHSAEILSRLGEKGRLFAFDQDQDAQENSIE 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +F+L A F ++ ++ +GV DG++ D GVSS Q D G+RGFS + L Sbjct: 69 -----DPRFTLIPANFRFIKRFLRLEGVNEVDGILGDFGVSSHQFDKGERGFSIRFEAEL 123 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + G+ AS++VN + + L +++ GE K + ++A AIV+RR P ++T+DL+ Sbjct: 124 DMRMDQNTGLGASELVNTYSQEQLAQLIWQYGEIKMSRKLAKAIVERRIIEPIKSTKDLN 183 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 L+ +K N+ + +QA+RI VN E+E L + L + + GG L ++S+HS Sbjct: 184 DLLTPFFPPTKVNK--FLAQVYQAIRIEVNQEMEALKEFLLQTSELITKGGRLSLISYHS 241 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDRLVK+F + + P F+ + K++ P ++ N+RSRSAKLR Sbjct: 242 LEDRLVKRFIRDGKFSGAPEKDFYGNMLVP--FKKV-GKMITPGAAELQKNKRSRSAKLR 298 Query: 313 AGMR 316 G + Sbjct: 299 IGEK 302 >gi|171920499|ref|ZP_02931791.1| S-adenosyl-methyltransferase MraW [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|171902972|gb|EDT49261.1| S-adenosyl-methyltransferase MraW [Ureaplasma parvum serovar 1 str. ATCC 27813] Length = 308 Score = 330 bits (846), Expect = 2e-88, Method: Composition-based stats. Identities = 105/310 (33%), Positives = 160/310 (51%), Gaps = 12/310 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI---ALDRDPFAVS 72 H+ VLL + I LLN P + +D TFG GG+S+ K S LD+D A++ Sbjct: 2 EFNQHITVLLNETIELLNIKPDGIYVDCTFGRGGHSQLILKKLSKKGKLICLDQDQEAIN 61 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK 129 ++ + + F L+ + VDG +FDLG+SS Q+D RGFS+ K Sbjct: 62 FANNLFKN-NTNVIVIKTNFKNLKSALGAHKIFYVDGFIFDLGLSSPQLDDPKRGFSYHK 120 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 + LDMRM S ++A +VN + L I GE K IA AIVK R TT Sbjct: 121 NAWLDMRMDQSQNLNAHYIVNNYSFAKLVSIFKRYGEIKYPKIIADAIVKERSIKEINTT 180 Query: 189 QDLSSLIQKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L +I+K K + HPA FQA+RI VN+E+ L + A L G++ + Sbjct: 181 LELVEIIKKYSPKKKLFEKKHPARLFFQAIRIEVNDELNILEKAFNDAISMLNPLGVVAI 240 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +SFHSLED++VKK F + + + + +P N + + + +K ++P+ +++ N RSR Sbjct: 241 ISFHSLEDKIVKKVFNNYAK--IKLPKEVPINNYVNKYSLLNQK-IMPSTQELNDNNRSR 297 Query: 308 SAKLRAGMRT 317 S+ LR +R Sbjct: 298 SSILRGLIRN 307 >gi|241765142|ref|ZP_04763130.1| S-adenosyl-methyltransferase MraW [Acidovorax delafieldii 2AN] gi|241365221|gb|EER60068.1| S-adenosyl-methyltransferase MraW [Acidovorax delafieldii 2AN] Length = 309 Score = 330 bits (846), Expect = 2e-88, Method: Composition-based stats. Identities = 123/311 (39%), Positives = 173/311 (55%), Gaps = 17/311 (5%) Query: 20 HVPVLLEKVIALLNPAPGK----VILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72 H VLL++ + L G +DATFG GG+SR +++A D+DP A+ Sbjct: 7 HTTVLLDEAVDALLGGAGAAPAGTWVDATFGRGGHSRRILLRLGPQGHLVAFDKDPEAIH 66 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 R +FS+ F L + +P V GV+ DLGVSS QID RGFSF+ GP Sbjct: 67 EAT---RITDARFSIRHEGFRHLAE-LPAGSVAGVLMDLGVSSPQIDSPGRGFSFRFDGP 122 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA-PFQTTQD 190 LDMRM + G S + + A V+ + ++ GEE+ A IA AIV RR+ P TT + Sbjct: 123 LDMRMDTTRGESVAQWLATAEVQQIAEVIRDYGEERFAGPIAKAIVARREERGPLATTAE 182 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ L+ V + + +PATR+FQALRIF+N E+EEL Q L ++ L+ GG L+V+SF Sbjct: 183 LADLVAGAVKTREPGQ-NPATRTFQALRIFINAELEELQQALEASLSVLQPGGRLVVISF 241 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDR+VK+F A S +V R A P V + + + P+ +VA N R+RSA Sbjct: 242 HSLEDRIVKQFIAQHSKEVYDRRAPF---APPKVMKLVALDRIKPSAAEVAANPRARSAI 298 Query: 311 LRAGMRTVERS 321 +R RT + Sbjct: 299 MRVAERTEAPA 309 >gi|226307047|ref|YP_002767007.1| methyltransferase MraW [Rhodococcus erythropolis PR4] gi|262825456|sp|C1A0Y3|RSMH_RHOE4 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|226186164|dbj|BAH34268.1| methyltransferase MraW [Rhodococcus erythropolis PR4] Length = 332 Score = 329 bits (845), Expect = 3e-88, Method: Composition-based stats. Identities = 112/330 (33%), Positives = 173/330 (52%), Gaps = 18/330 (5%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKMGS- 59 M+ HVPVLL + LL PA G ++DAT G GG+S F Sbjct: 1 MNEPSDADGFAHVPVLLHRADDLLGPAITAVGDGGEGAYMIDATLGLGGHSEFFLGKYPG 60 Query: 60 -NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLG 112 ++I LDRD A+ E + + ++ + T+ ++D + G V ++FDLG Sbjct: 61 LHLIGLDRDTNALRIASERLAPFADRTTFVHTTYDGIEDALEQAGLPSTESVHAILFDLG 120 Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASR 171 VSSMQ+D DRGF++ PLDMRM + G++A++V+N + DL RIL GEE+ A + Sbjct: 121 VSSMQLDEADRGFAYSIDAPLDMRMDQTVGLTAAEVLNTYSHGDLARILSTYGEERFAGK 180 Query: 172 IAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQ 230 IA I+++R+ PF T+ L L+ +T+ + + HPA R+FQALRI VN E++ L Sbjct: 181 IASEILRQREREPFTTSAALVELLYRTIPAATRRTGGHPAKRTFQALRIEVNAELDSLRA 240 Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK 290 + + AL GG ++ +S+ SLEDR+VK RS + F+ +T+ Sbjct: 241 AVPAGLDALAVGGRVVFMSYQSLEDRVVKAELVPRSKSTSPEGLPVELPGMGPEFRILTR 300 Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMRTVER 320 +++++ N RS +LRA R R Sbjct: 301 GAERASEQEIEENPRSAPVRLRAAERISRR 330 >gi|320106390|ref|YP_004181980.1| S-adenosyl-methyltransferase MraW [Terriglobus saanensis SP1PR4] gi|319924911|gb|ADV81986.1| S-adenosyl-methyltransferase MraW [Terriglobus saanensis SP1PR4] Length = 319 Score = 329 bits (845), Expect = 3e-88, Method: Composition-based stats. Identities = 121/311 (38%), Positives = 170/311 (54%), Gaps = 28/311 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQE 76 HVPVL ++V+ LN G DAT G GG+S +I DRDP A++ + Sbjct: 6 HVPVLYDEVLNFLNVRAGGTYADATLGLGGHSSGIARLLGAKGTLICFDRDPEAMTKAKA 65 Query: 77 T-------MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 + D FS+ +D + +DG++ D GVSS+Q+D RGFSF+ Sbjct: 66 RFEALAVELGDTMPTVRFEPRAFSEAKDVIKPGSLDGLLADFGVSSLQLDEAHRGFSFRF 125 Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM SG +A VVNQA+ ++L ++ GEE+++ RIA AIV+ R P +TT Sbjct: 126 EGPLDMRMDTRSGETAEQVVNQADEEELANLIYEFGEERRSRRIARAIVRAR---PIRTT 182 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ +I K+++IHPATR+FQALRI VN+E+ E+ L SA LK GG L V+ Sbjct: 183 AELAKVISVAAPSMKSDKIHPATRTFQALRIRVNDELGEIRTLLESAPSLLKVGGRLAVI 242 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDRLVK + + + I KK + ++++ N RSRS Sbjct: 243 SFHSLEDRLVKDATRDGARDGI--------------WNLIEKKPITAGEDEIQRNPRSRS 288 Query: 309 AKLRAGMRTVE 319 AKLR R + Sbjct: 289 AKLRVAERIAD 299 >gi|237749177|ref|ZP_04579657.1| S-adenosyl-methyltransferase MraW [Oxalobacter formigenes OXCC13] gi|229380539|gb|EEO30630.1| S-adenosyl-methyltransferase MraW [Oxalobacter formigenes OXCC13] Length = 319 Score = 329 bits (845), Expect = 3e-88, Method: Composition-based stats. Identities = 110/310 (35%), Positives = 175/310 (56%), Gaps = 18/310 (5%) Query: 20 HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSC 73 H VLL++ + L + +D TFG GG+SR + +IA D+DP AVS Sbjct: 6 HDSVLLKEAVDALAIEGDRVNGIFIDGTFGRGGHSRLILERLGGEGRLIAFDKDPEAVSV 65 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130 + +F + +F+ L + + +KG+ DG++ DLG+SS Q++ RGFSF+ Sbjct: 66 AGKI---TDPRFEIVHKSFADLGEVLEEKGIEMIDGILLDLGISSPQVEDAARGFSFRLE 122 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 GPLDMRM + G+SA++ + + + ++ GEE+ A +IA AIV R P +T+ Sbjct: 123 GPLDMRMDSTRGLSAAEWLAVETEEKIAEVIHQYGEERFAFQIAKAIVACRTIKPIDSTK 182 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ ++ V + + +PATR+FQA+RIF+N E+EEL GL++A + L+ G + V+S Sbjct: 183 QLAEIVAGAVKTFEKGK-NPATRTFQAIRIFINRELEELEIGLQAAWQHLRLNGRMSVIS 241 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 FHSLEDR+VKKF + ++ M R + + + + K P++ +V+ N RSR Sbjct: 242 FHSLEDRIVKKFLSGKAKVDMPDRRLPIRAIDLPQPEMKLLGK--QKPSKAEVSKNARSR 299 Query: 308 SAKLRAGMRT 317 SA LR R Sbjct: 300 SAILRIATRV 309 >gi|313617974|gb|EFR90135.1| S-adenosyl-methyltransferase MraW [Listeria innocua FSL S4-378] Length = 274 Score = 329 bits (845), Expect = 3e-88, Method: Composition-based stats. Identities = 91/270 (33%), Positives = 157/270 (58%), Gaps = 6/270 (2%) Query: 55 CKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDL 111 ++ A D+D A+ + + +Y ++ + ++ F +++ + ++G VDG+++DL Sbjct: 4 LNEQGHLFAFDQDQTAIDNAKIKLAEYSDRVTFIKSNFRYMKEALNERGIEAVDGILYDL 63 Query: 112 GVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQAS 170 GVSS Q+D +RGFS+ + LDMRM ++A VVN+ + +DL RI GEEK + Sbjct: 64 GVSSPQLDERERGFSYHQDAALDMRMDQEQELTAKKVVNEWSYQDLIRIFFQYGEEKFSK 123 Query: 171 RIAHAIVKRRQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELA 229 +IA I +RR+ P +TT +L +I+ + ++ HP R+FQA+RI VN+E+ + Sbjct: 124 QIAREIERRREVKPIETTGELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVE 183 Query: 230 QGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSI 288 L +A LK GG + V++FHSLEDR+ K F + G + + + + F+ Sbjct: 184 DSLENALTLLKPGGRISVITFHSLEDRITKHLFQEATKGPDLPPGLPVIPDEYKPDFKLA 243 Query: 289 TKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318 T+K +VP++E++ N R+RSAKLR + + Sbjct: 244 TRKPIVPSEEELEQNNRARSAKLRVIEKII 273 >gi|237756569|ref|ZP_04585091.1| S-adenosyl-methyltransferase MraW [Sulfurihydrogenibium yellowstonense SS-5] gi|237691269|gb|EEP60355.1| S-adenosyl-methyltransferase MraW [Sulfurihydrogenibium yellowstonense SS-5] Length = 293 Score = 329 bits (845), Expect = 3e-88, Method: Composition-based stats. Identities = 109/306 (35%), Positives = 177/306 (57%), Gaps = 22/306 (7%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76 +H VL +V+ G + +DAT G GG+S K N+ I LD+D FA+ +E Sbjct: 3 EHYSVLHREVLEFSKLVAGGIFVDATVGGGGHSYLILKQNPNLKLIGLDKDDFALKVAKE 62 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +++++++ +L +++F L + + ++G++FD GVS+ Q+ +RGFSFQ+ L Sbjct: 63 RLKEFEDRITLLKSSFKDLDKVLQSLQIREINGILFDFGVSTFQLKL-ERGFSFQREEFL 121 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + ++A DVVN +DL I+ GEEK AS+IA +I + R+ +TT++L+ Sbjct: 122 DMRMDTTQKLTAYDVVNYYREQDLYNIIKTYGEEKFASKIAKSIAEYRKKKKIETTKELA 181 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++ + + ++ +IHPATR+FQA+RI VNNE++++ +GL A L G ++ +SFH Sbjct: 182 DIVYRCYPPNLRHGKIHPATRTFQAIRIEVNNELKDIEEGLEKAINLLAKNGTIMAISFH 241 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+VK F + +TKK + P+ E++ N SRSAKL Sbjct: 242 SLEDRIVKNTFKKYK--------------ELKFLEILTKKPITPSDEEIKENPASRSAKL 287 Query: 312 RAGMRT 317 R G R Sbjct: 288 RVGRRI 293 >gi|108757260|ref|YP_633751.1| S-adenosyl-methyltransferase MraW [Myxococcus xanthus DK 1622] gi|122980788|sp|Q1D0S2|RSMH_MYXXD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|108461140|gb|ABF86325.1| S-adenosyl-methyltransferase MraW [Myxococcus xanthus DK 1622] Length = 304 Score = 329 bits (845), Expect = 3e-88, Method: Composition-based stats. Identities = 117/311 (37%), Positives = 170/311 (54%), Gaps = 12/311 (3%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDP 68 M+++ H VLL + + LL PA G+VI+D T G GG+S + G+ V+ +DRDP Sbjct: 1 MTASDFQ----HQTVLLREAVDLLRPADGRVIIDGTLGGGGHSEALLASGATVVGVDRDP 56 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK-GVDGVVFDLGVSSMQIDCGDRGFSF 127 A++ + +F F++L D VDGV+ DLGVSS Q+D +RGFSF Sbjct: 57 VALAAATARLGA-NPRFQGRAGNFAELPRVAADLLPVDGVLVDLGVSSPQLDVAERGFSF 115 Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 K GPLDMRM G +A++++ + ++L RIL GEE A IA + K Sbjct: 116 SKDGPLDMRMGPDGPTAAELIATTDERELVRILKDYGEEPFARPIARELKKALP----TR 171 Query: 188 TQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T + + ++++ V NRIH ATR+FQALR+ VN E+E L L + LK GG Sbjct: 172 TLEAAEVVKRAVPRKAWPNRIHVATRTFQALRMAVNGELEALDALLAAIPGLLKVGGRAA 231 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V++FHSLEDR VK+ F + +G+ + + F +TKK V ++ +V N R Sbjct: 232 VIAFHSLEDRKVKEAFRALAGRCTCPPGLPVCVCSGVGDFALVTKKAVAASEAEVEANPR 291 Query: 306 SRSAKLRAGMR 316 SRSA LR + Sbjct: 292 SRSAHLRVVEK 302 >gi|332882630|ref|ZP_08450242.1| S-adenosyl-methyltransferase MraW [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332679430|gb|EGJ52415.1| S-adenosyl-methyltransferase MraW [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 304 Score = 329 bits (845), Expect = 3e-88, Method: Composition-based stats. Identities = 108/316 (34%), Positives = 164/316 (51%), Gaps = 21/316 (6%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65 MS +I + H+PVLL++ I L PG +D TFG GG+SR + A D Sbjct: 1 MSDSISY----HIPVLLKQSIDGLAIKPGGTYVDVTFGGGGHSREILNRLGENGRLYAFD 56 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGD 122 +D A++ + +F+L F L+ Y+ GV DGV+ D GVSS Q D + Sbjct: 57 QDADALNNTID-----DPRFTLIHQNFKYLKQYLRFYGVSEVDGVLGDFGVSSHQFDVAE 111 Query: 123 RGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFS + G LDMRM+ S ++A VVN+ + LTRI + GE K A IA AI+ RQ Sbjct: 112 RGFSTRFEGALDMRMNQQSELTAQQVVNEYDEAALTRIFSLYGELKNARAIARAIIAFRQ 171 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 P + L ++ + K N++ + +Q++RI VN E+E L L +K Sbjct: 172 HTPIRLGSTLQEAVRAFLPKFKENKV--LAQIYQSIRIEVNAEMEVLESFLLQLPAVVKV 229 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 GG + ++S+HSLEDR VK+F + + + + P F+ + +++P + ++ Sbjct: 230 GGRISLISYHSLEDRCVKRFIRDGQMEGAPEKDWYGNVSVP--FKKV-GGLILPDEAEIT 286 Query: 302 FNRRSRSAKLRAGMRT 317 N R+RSAKLR R Sbjct: 287 INNRARSAKLRIAERI 302 >gi|294101810|ref|YP_003553668.1| S-adenosyl-methyltransferase MraW [Aminobacterium colombiense DSM 12261] gi|293616790|gb|ADE56944.1| S-adenosyl-methyltransferase MraW [Aminobacterium colombiense DSM 12261] Length = 300 Score = 329 bits (845), Expect = 3e-88, Method: Composition-based stats. Identities = 115/310 (37%), Positives = 179/310 (57%), Gaps = 26/310 (8%) Query: 19 DHVPVLLEKVIALL-NPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQ 75 +H+PV+L++VI L N ++I+DAT G GGY+ + ++ +DRD A+S Q Sbjct: 3 EHIPVMLKEVIESLKNVESPQMIVDATLGLGGYAEEILNVFPATLLVGIDRDEQAISLAQ 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGV--DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + + E+ ++ + FS + + + DG+VFDLGVS++Q+ +RGFSFQ GPL Sbjct: 63 KRLVSFAERVHIYNSPFSAIAMVLSKENAEPDGIVFDLGVSNLQLSSPERGFSFQNDGPL 122 Query: 134 DMRM----SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQTT 188 DMRM SG SA+ +VN + K+L I GEE+ + RIA IV+ R+ P Q T Sbjct: 123 DMRMEGTSGESGYSAAQIVNTFSEKELADIFWKYGEERYSRRIATGIVRFREKNGPIQRT 182 Query: 189 QDLSSLIQKTVYFS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 L I+ ++ + HPA + FQALRIFVN+E++EL +GL+ A ++L GG+++ Sbjct: 183 FQLVEAIRSSLPAPVQRKMGGHPARKVFQALRIFVNDELQELEKGLQGALESLAPGGVIV 242 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 VVS+HSLEDR+VK +T++ + P++E+V N ++ Sbjct: 243 VVSYHSLEDRIVKYAMKDWKTSDHGD--------------LLTRRPLKPSEEEVEKNYKA 288 Query: 307 RSAKLRAGMR 316 RSAKLRA + Sbjct: 289 RSAKLRAFRK 298 >gi|77166320|ref|YP_344845.1| methyltransferase [Nitrosococcus oceani ATCC 19707] gi|254435207|ref|ZP_05048714.1| S-adenosyl-methyltransferase MraW [Nitrosococcus oceani AFC27] gi|88909205|sp|Q3J781|RSMH_NITOC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|76884634|gb|ABA59315.1| methyltransferase [Nitrosococcus oceani ATCC 19707] gi|207088318|gb|EDZ65590.1| S-adenosyl-methyltransferase MraW [Nitrosococcus oceani AFC27] Length = 315 Score = 329 bits (845), Expect = 3e-88, Method: Composition-based stats. Identities = 114/313 (36%), Positives = 184/313 (58%), Gaps = 13/313 (4%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70 ++ I H PVLL + I L + +D TFG GG++++ ++ +D+DP A Sbjct: 3 NNEISSHQPVLLREAIQALAIRRDGLYIDGTFGRGGHAQAILAALSSEGRLLGVDKDPAA 62 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFS 126 ++ G + +F++ QA+ L V ++G ++GV+FDLGVSS Q++ +RGFS Sbjct: 63 IAAGHALAQK-DGRFTIVQASIGDLARVVSERGWLKRINGVLFDLGVSSPQLESAERGFS 121 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 F + GPLDMRM+ + G SA++ + A K++ +L + GEE+ RIA AI++ R+ Sbjct: 122 FLRDGPLDMRMNPTVGQSAAEWLANAKEKEIAEVLRVYGEERYCRRIARAIIQARELNSL 181 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 T+ L+ ++ K + R+HPATRSFQA+RIF+N+E+EEL L A AL G L Sbjct: 182 TRTKQLAEVVAKAIP-RWERRMHPATRSFQAIRIFINHELEELRAALEQALAALAVKGRL 240 Query: 246 IVVSFHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 V+SFHSLEDR+VK+FF ++ ++ ++ + A + + K + P E++A N Sbjct: 241 AVISFHSLEDRIVKRFFREKARGEELPPDLPVMQKDFQQASLKVL-GKPIWPVPEEIAHN 299 Query: 304 RRSRSAKLRAGMR 316 R+RSA+LR + Sbjct: 300 PRARSARLRVAEK 312 >gi|329895271|ref|ZP_08270913.1| S-adenosyl-methyltransferase MraW [gamma proteobacterium IMCC3088] gi|328922393|gb|EGG29736.1| S-adenosyl-methyltransferase MraW [gamma proteobacterium IMCC3088] Length = 305 Score = 329 bits (845), Expect = 3e-88, Method: Composition-based stats. Identities = 115/305 (37%), Positives = 167/305 (54%), Gaps = 9/305 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 H VLLE+ + L +D TFG GG++R+ + ++ V+ +D+DP A+ Q Sbjct: 1 MHESVLLEESLQGLVGPLSGRYVDGTFGRGGHTRALLALLNDDAAVLVMDKDPQAIEVAQ 60 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + S++ +F+ L D + GVDGV+ DLGVSS Q+D +RGFSFQ+ GP Sbjct: 61 A-LAAEDGRVSVYHGSFADLPDALRQLGWAGVDGVLLDLGVSSPQLDQDERGFSFQRQGP 119 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM SG + ++ + + DL +L GEE+ A RIA AIVK R +P TT L Sbjct: 120 LDMRMDNSSGQTVAEYLQGVSETDLISVLRDYGEERFARRIAAAIVKARADSPITTTLQL 179 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + L++ + ++ HPATR+FQALRI +N E+E+L L L G L V+SFH Sbjct: 180 AELVKAAHPRWEKHK-HPATRTFQALRIAINRELEDLDVLLDVVVDCLSPSGRLAVISFH 238 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR VK+F S R + ++ K + P++ +V N R+RSA L Sbjct: 239 SLEDRKVKQFMRKASQGPKVPRGVPVQGDTMRGPLALVGKAIKPSEREVQANVRARSAVL 298 Query: 312 RAGMR 316 R R Sbjct: 299 RIAER 303 >gi|327399188|ref|YP_004340057.1| Ribosomal RNA small subunit methyltransferase H [Hippea maritima DSM 10411] gi|327181817|gb|AEA33998.1| Ribosomal RNA small subunit methyltransferase H [Hippea maritima DSM 10411] Length = 297 Score = 329 bits (845), Expect = 3e-88, Method: Composition-based stats. Identities = 126/312 (40%), Positives = 182/312 (58%), Gaps = 27/312 (8%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 H VLL++ I L P G + +D T GA G++ K+ S VIA D+D A+ Q Sbjct: 2 KHKSVLLKETITTLQPRNGGIYIDMTLGAAGHTEKLLKLSSPSGIVIAFDKDQDAIKHAQ 61 Query: 76 ETMRD-YKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E +++ Y ++ L ++ +++++ VDGV+ DLGVS Q+ DRGFSF Sbjct: 62 EKLKETYGDRLILINDDYANIKEHLRRLEIDEVDGVIMDLGVSLDQLK-SDRGFSFNIDA 120 Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + ++A +VN ++++L RI+ + GEE A RIA AIVK R P TT++ Sbjct: 121 PLDMRMDKNKPLTAEKIVNHWDMEELERIIRLYGEENFARRIAKAIVKNR---PIHTTKE 177 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ LI+ TV S + RIHPATR+FQALRI VN+E+E L +GL+ A +ALK G++ +SF Sbjct: 178 LAELIELTVPRSVSRRIHPATRTFQALRIVVNDELESLQKGLKGAIEALKENGIICAISF 237 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDR+VK V + + KK + PT ++V N+ SRSAK Sbjct: 238 HSLEDRIVKNILRDYK--------------QKGVLRLLNKKPIRPTPQEVKSNKHSRSAK 283 Query: 311 LRAGMR-TVERS 321 LR ++ T E S Sbjct: 284 LRCALKLTREDS 295 >gi|152992227|ref|YP_001357948.1| S-adenosyl-methyltransferase MraW [Sulfurovum sp. NBC37-1] gi|262825720|sp|A6Q7Y2|RSMH_SULNB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|151424088|dbj|BAF71591.1| S-adenosyl-methyltransferase MraW [Sulfurovum sp. NBC37-1] Length = 307 Score = 329 bits (844), Expect = 4e-88, Method: Composition-based stats. Identities = 100/299 (33%), Positives = 167/299 (55%), Gaps = 8/299 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76 H+PVLLE+V+ + P +D T G G+S K ++ I +DRD A++ ++ Sbjct: 4 PHIPVLLEEVLESFSRVPEGYFVDCTLGYAGHSSEILKRYDHLKHIGIDRDDEALAFSKK 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + ++++ +L++ TF+ + + + V ++ D GVSS+Q+D +RGF+F LDMR Sbjct: 64 RLEPFRDRSTLYKGTFATVLPTLKEAPVTALLADFGVSSLQLDKKERGFAFDSE-TLDMR 122 Query: 137 MSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M + +SA +VVN + L I GE + ++A A+V R AP ++ + LS + Sbjct: 123 MDANAPLSAYEVVNTYPKEKLEYIFDTYGEVRSYKKLASAVVDARAKAPIESAKALSEIA 182 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + + +IHPAT FQA+RI VNNE+ E+ L + E G ++ +++FHSLED Sbjct: 183 KGVIPPG--GKIHPATLMFQAIRIEVNNELGEIEGLLDAIEAKHYEGEVVSLITFHSLED 240 Query: 256 RLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 RLVK F S + + H A+ +++++K V ++E++ N RSRSAKLR Sbjct: 241 RLVKNRFRKWSQECICDPHAIRCTCGKKHALGKALSRKPVTASKEELRVNPRSRSAKLR 299 >gi|282854266|ref|ZP_06263603.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes J139] gi|282583719|gb|EFB89099.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes J139] Length = 346 Score = 329 bits (844), Expect = 4e-88, Method: Composition-based stats. Identities = 112/321 (34%), Positives = 170/321 (52%), Gaps = 11/321 (3%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNP--APGK-VILDATFGAGGYSRSFCKMGSN--VIA 63 M++ + HVPV+ +++ LL G+ V +D T G GG++ + + + ++ Sbjct: 12 MATDAIGSDAVHVPVMRARILDLLAVVLKSGRRVHVDGTLGMGGHAEAVLRRFPDVELVG 71 Query: 64 LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDC 120 +DRD A++ + + + ++ L A +L + + D G VD V+ DLG+SS QID Sbjct: 72 IDRDQQALTMAEARLEPFADRVHLVHAVHDELPEVLDDLGLDYVDSVLLDLGLSSFQIDE 131 Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS+ PLDMRM S G +A+ ++N+++ DL R+L GEEK A RI AIV Sbjct: 132 VERGFSYSVDSPLDMRMDQSSGRTAAQILNESDPGDLVRMLREYGEEKFADRIVRAIVTE 191 Query: 180 RQSAPFQTTQDLSSLIQKTVYF--SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 R P +T+ L +I + + + HPA R+FQALRI VN E+E L L A Sbjct: 192 RDRQPIETSGRLVEIITEAIPATVRRKRHSHPAKRTFQALRIAVNREMETLPAVLPRALN 251 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297 L GG + V+S+HSLEDR VK+ F + + A F +T+ P Sbjct: 252 RLDVGGRIAVLSYHSLEDRPVKEAFRDACADTAPTGLPMVPESMAAKFNPVTRGAERPDA 311 Query: 298 EDVAFNRRSRSAKLRAGMRTV 318 ++VA N RS SA+LR R Sbjct: 312 DEVATNPRSASARLRVIGRVR 332 >gi|206901857|ref|YP_002250979.1| S-adenosyl-methyltransferase MraW [Dictyoglomus thermophilum H-6-12] gi|263447293|sp|B5YEM1|RSMH_DICT6 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|206740960|gb|ACI20018.1| S-adenosyl-methyltransferase MraW [Dictyoglomus thermophilum H-6-12] Length = 297 Score = 329 bits (844), Expect = 4e-88, Method: Composition-based stats. Identities = 110/305 (36%), Positives = 171/305 (56%), Gaps = 27/305 (8%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H PV+L++VI LN +PGK+++DAT G GG+S + +I +DRD + +E Sbjct: 8 HKPVMLKEVIHYLNLSPGKIVVDATLGLGGHSSEILRELRGEGLLIGIDRDEEVLKLARE 67 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK-SGP 132 + F LF T+ LQ+ + + +D ++FDLG SS I+ RGFSF + P Sbjct: 68 RLSKIAGNFVLFNTTYDNLQNILKELNLSFIDAILFDLGFSSFHIEKSGRGFSFMRPEEP 127 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMR S + ++A+D++N + +L+ + GEE + ++A IV+RR+ F DL Sbjct: 128 LDMRYSKDTALTAADILNTFSESELSNLFWEYGEEPLSKKLAKKIVERRKDKKFAYVGDL 187 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I + + + H AT+ FQALRI VN+E+ + L L GG ++V+++H Sbjct: 188 LEVIDEVIPRRRR---HEATKVFQALRIAVNDELNIFKRALEQVPFILSIGGRIVVITYH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+VK FF S S K++ ++KKV+ P+ E++ NRR+RSAKL Sbjct: 245 SLEDRIVKNFFKSYSDKILP----------------VSKKVIKPSIEEIKENRRARSAKL 288 Query: 312 RAGMR 316 R G R Sbjct: 289 RVGER 293 >gi|332210617|ref|XP_003254406.1| PREDICTED: probable S-adenosyl-L-methionine-dependent methyltransferase METT5D1 [Nomascus leucogenys] Length = 407 Score = 329 bits (843), Expect = 4e-88, Method: Composition-based stats. Identities = 130/335 (38%), Positives = 183/335 (54%), Gaps = 38/335 (11%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H+PV++++V+ L+P G++ LD TFG+GG++++ + ALDRDP A + + Sbjct: 72 HIPVMVDEVVHCLSPRKGQIFLDMTFGSGGHTKAXXXXXXXXXLYALDRDPTAYALAEHL 131 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 Y +Q FSQ + + GV DGV+ DLG SSMQ+D +RGFS +K GP Sbjct: 132 SELYPKQIRAMLGQFSQAEALLMKAGVQPGTFDGVLMDLGCSSMQLDTPERGFSLRKDGP 191 Query: 133 LDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM +A+DVVN + + L IL GEEK A +IA AIV+ R P T Sbjct: 192 LDMRMDGGRYPDMPTAADVVNALDQQALASILRTYGEEKHAKKIASAIVQARSIYPITRT 251 Query: 189 QDLSSLIQKTVYFSK--------NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 Q L+S++ S H AT++FQALRIFVNNE+ EL GL++A+K L+ Sbjct: 252 QQLASIVAGAFPPSAIYARKDLLQRSTHIATKTFQALRIFVNNELNELYMGLKTAQKFLR 311 Query: 241 AGGLLIVVSFHSLEDRLVKKFF-------------------ASRSGKVMAVRHMIPSNAH 281 GG L+ +SFHSLEDR+VK+F S+ G + Sbjct: 312 PGGRLVALSFHSLEDRIVKRFLLGISMTERFNLSVRQQVMKTSQLGSDYENTEEVSVRRA 371 Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 P +++ I KKV+ P +DV N R RSAKLRA ++ Sbjct: 372 PLMWELIHKKVLSPQDQDVQDNPRGRSAKLRAAIK 406 >gi|56476234|ref|YP_157823.1| S-adenosyl-methyltransferase MraW [Aromatoleum aromaticum EbN1] gi|68565443|sp|Q5P6Y9|RSMH_AZOSE RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|56312277|emb|CAI06922.1| S-adenosyl-methyltransferase mraW [Aromatoleum aromaticum EbN1] Length = 312 Score = 329 bits (843), Expect = 5e-88, Method: Composition-based stats. Identities = 124/317 (39%), Positives = 170/317 (53%), Gaps = 17/317 (5%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 MS+A HV VLL + + L PG V +D TFG GG+SR+ +IA D Sbjct: 1 MSAAPQ-----HVTVLLAEAVEALAIRPGGVYVDGTFGRGGHSRAILAKLDADGRLIAFD 55 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGD 122 RDP A+ + + + A FS + + G VDGV+ DLGVSS Q+D Sbjct: 56 RDPRAIEVARAL---PDPRLTAVHAPFSAFAEELDRLGLEHVDGVLLDLGVSSPQLDEAA 112 Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RG SF+ PLDMRM S G + + + A+V +T +L GEE+ A IA AI R Sbjct: 113 RGMSFRFDAPLDMRMDTSRGQTVAQWLADASVAQITEVLRDYGEERFAYAIAKAIAAARA 172 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 +T+ L+ +++K V + + HPATRSFQALRIF+N E+EEL+ L +A + LK Sbjct: 173 GGAVASTRQLAEIVEKAVRTREPGQ-HPATRSFQALRIFINQELEELSLVLPAAVERLKP 231 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300 GG L+ +SFHSLEDR+VK+F S + R + + P + K P +V Sbjct: 232 GGRLVAISFHSLEDRIVKRFMRDESRPPQLPSRLPLRAAELPQPRLRLVGKSQRPGPGEV 291 Query: 301 AFNRRSRSAKLRAGMRT 317 A N RSRSA +R RT Sbjct: 292 AANPRSRSAVMRVAERT 308 >gi|313678556|ref|YP_004056296.1| S-adenosyl-methyltransferase MraW [Mycoplasma bovis PG45] gi|312950217|gb|ADR24812.1| S-adenosyl-methyltransferase MraW [Mycoplasma bovis PG45] Length = 300 Score = 329 bits (843), Expect = 5e-88, Method: Composition-based stats. Identities = 106/305 (34%), Positives = 154/305 (50%), Gaps = 15/305 (4%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQ 75 H+P+LL++ I LN + +D T G GG+S K N ++ D+D FA+ + Sbjct: 3 NKHIPILLKEAINSLNIKSNGIYVDLTVGMGGHSAEILKKLDNGMLVGFDKDLFAIEESR 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + F L + F + D + VDG++ DLG+SS Q+D +RGFS+ K Sbjct: 63 KRLSKIGLNFQLIHSDFVNVTDELAKLNITAVDGILVDLGISSPQVDNAERGFSYNKDAR 122 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ + + A VVN + +L I E K A ++A+AI K R P TT +L Sbjct: 123 LDMRMNTNQVLDAHFVVNNYDENNLISIFYNYAEVKLAKQVANAIAKNR---PINTTLEL 179 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 S +I+ ++ +P FQA+RI VNNE + L A LK L V+SFH Sbjct: 180 SEIIKSAYPAKLLSQKNPCKAVFQAIRIEVNNEFSSIESMLSQALNLLKKDSSLAVISFH 239 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLED LVKKFF + + I + V KV P++ ++ N RSRSAKL Sbjct: 240 SLEDSLVKKFFGNLIKSKHPSKMPIKEDKKYIV------KVYNPSKSEIELNNRSRSAKL 293 Query: 312 RAGMR 316 R + Sbjct: 294 RVLTK 298 >gi|154488900|ref|ZP_02029749.1| hypothetical protein BIFADO_02209 [Bifidobacterium adolescentis L2-32] gi|154083037|gb|EDN82082.1| hypothetical protein BIFADO_02209 [Bifidobacterium adolescentis L2-32] Length = 343 Score = 329 bits (843), Expect = 5e-88, Method: Composition-based stats. Identities = 108/307 (35%), Positives = 159/307 (51%), Gaps = 11/307 (3%) Query: 20 HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 H PVLL + L+ P PG + +D T G G+S +F K +I +DRD A++ Sbjct: 8 HQPVLLRDCVDLVAPALAKPGSIAVDCTLGLAGHSTAFLKASPNARLIGIDRDTEALALA 67 Query: 75 QETMR--DYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQK 129 + M ++F+ A F + D+GVD V DLG+SS+QID +RGFS+ Sbjct: 68 TKRMEMDGLADRFTPVHAAFDDFSQVLSDQGVDKVNAVFMDLGLSSLQIDETERGFSYSH 127 Query: 130 SGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM ++A V+ + + DL RI GEE+ + +IA IV+RR++ P T+ Sbjct: 128 DAPLDMRMDVTQPLTAEQVLAEYSFADLVRIFRTYGEERFSKQIAREIVRRRETEPLTTS 187 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ L+ + V + +PA R FQALRI VN E+++LA L L GG L+V Sbjct: 188 GQLNRLVDEVVPQAHRPAGNPAKRVFQALRIEVNGELDKLAGTLPQIANHLAVGGRLVVE 247 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 S+HSLED+ VK F + F+ +T+ + E++A N RS S Sbjct: 248 SYHSLEDKTVKAFMNQGLKVDAPADMPVVPPDMMPFFKELTRGAIKADAEEIANNPRSAS 307 Query: 309 AKLRAGM 315 +LRA Sbjct: 308 VRLRAVE 314 >gi|89891774|ref|ZP_01203276.1| S-adenosyl-methyltransferase, MraW family [Flavobacteria bacterium BBFL7] gi|89515929|gb|EAS18594.1| S-adenosyl-methyltransferase, MraW family [Flavobacteria bacterium BBFL7] Length = 304 Score = 329 bits (843), Expect = 5e-88, Method: Composition-based stats. Identities = 107/314 (34%), Positives = 158/314 (50%), Gaps = 17/314 (5%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPF 69 + H PVLLE+ I L P V +D T+G GG+SR + A D+D Sbjct: 1 MTQQSSYHSPVLLEESIDGLAINPSGVYVDVTYGGGGHSREILSRLGEDGKLFAFDQDLD 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFS 126 A+ E +F+L F ++ ++ GV DG++ DLGVSS Q D DRGFS Sbjct: 61 ALENVIE-----DPRFTLINQNFRFMKRFLRMYGVKEVDGILADLGVSSHQFDEADRGFS 115 Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 + LDMRM+ S + A VVN DL RI GE + A R+ AI+ +RQ Sbjct: 116 TRFDARLDMRMNQESELDAVRVVNDYEEDDLNRIFKEYGELRIAPRLTRAIIAKRQEGLI 175 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 +T L + V +++ + FQA+RI VN E++ L + L +++ LK GG L Sbjct: 176 ETVAQLKEICAPFVPERIQHKM--LAQVFQAIRIEVNQEMDVLEEFLIQSKEILKTGGRL 233 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V+S+HSLEDR VK+F + + + + P F+ + K+++PT + N R Sbjct: 234 SVISYHSLEDRPVKRFMRNGLFHGEPEKDVFGRASVP--FKKV-GKLIIPTAAQIKENNR 290 Query: 306 SRSAKLRAGMRTVE 319 +RSAKLR R + Sbjct: 291 ARSAKLRIAQRIED 304 >gi|148244441|ref|YP_001219135.1| S-adenosyl-methyltransferase [Candidatus Vesicomyosocius okutanii HA] gi|263504496|sp|A5CX97|RSMH_VESOH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|146326268|dbj|BAF61411.1| S-adenosyl-methyltransferase [Candidatus Vesicomyosocius okutanii HA] Length = 307 Score = 329 bits (843), Expect = 6e-88, Method: Composition-based stats. Identities = 96/308 (31%), Positives = 171/308 (55%), Gaps = 16/308 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H V+ + + LN + +DATFG GG+++ +IA D+D A+ + Sbjct: 6 HQSVMFNESMYALNIKTDGIYIDATFGRGGHAQGILNRLSKKGRLIAFDQDINAIEYANK 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + +L + FS++ + +G +DG++ DLGVSS Q++ RGFSF+ GP Sbjct: 66 NL--VDNRLTLIHSAFSKMLSIITKQGLIGRIDGILIDLGVSSPQLENAQRGFSFRVDGP 123 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ + G+SA+ + AN +++ ++ EK++ IA+ I K +++ +TT +L Sbjct: 124 LDMRMNQTTGMSATQWLKSANEEEIANVIYQFSNEKKSRHIANKIKKYQKNHVLETTLEL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++++ K V K HPATR+FQA+RIF+N E+++L L ++ L G L ++SFH Sbjct: 184 ANIVSKVV--KKQKNKHPATRTFQAIRIFINQELKQLISVLEQSKDILSKNGRLSIISFH 241 Query: 252 SLEDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 S+EDR+VK+F S + + +I + + + K + ++ ++ N+R+RSA Sbjct: 242 SIEDRIVKRFIQKNSRQKTLPKGLPIIENEIEKTYLKDL-GKYLT-SKAEIDNNKRARSA 299 Query: 310 KLRAGMRT 317 LR + Sbjct: 300 ILRVASKN 307 >gi|323356558|ref|YP_004222954.1| S-adenosylmethionine-dependent methyltransferase [Microbacterium testaceum StLB037] gi|323272929|dbj|BAJ73074.1| predicted S-adenosylmethionine-dependent methyltransferase [Microbacterium testaceum StLB037] Length = 317 Score = 328 bits (842), Expect = 6e-88, Method: Composition-based stats. Identities = 113/311 (36%), Positives = 167/311 (53%), Gaps = 9/311 (2%) Query: 20 HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 H PVLLE+ LL P P V +D T G GG+S +F + +I LDRD A+ Sbjct: 7 HTPVLLERCAELLAPALERPDAVFVDGTLGMGGHSEAFLERFPTARLIGLDRDTDALRIA 66 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSG 131 E + + ++ +L + + + V GVD G++FDLGVSS+Q+D RGF++ + Sbjct: 67 GERLARFGDRVTLVHTVYDGIAEAVASAGVDKVDGILFDLGVSSLQLDEASRGFAYAQDA 126 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + G++A++V+ DL RI GEEK A R A AI+ R AP + + Sbjct: 127 PLDMRMDQTQGVTAAEVLATYGEGDLRRIFERYGEEKLAGRYARAIIAARAEAPLERSGQ 186 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L ++Q + HPA R FQALRI VN E+ L + + +A K L GG ++V+S+ Sbjct: 187 LVDVLQAATPAAVLRERHPAKRVFQALRIEVNAELSVLERTIPAALKVLGVGGRIVVLSY 246 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDRLVK+ FA + + H F+ + + + + E+ A N R+ + Sbjct: 247 QSLEDRLVKRVFAEAAASTAPRGLPVELPEHAPKFRLLVRGAELASDEERAANPRATPVR 306 Query: 311 LRAGMRTVERS 321 LRA RT E + Sbjct: 307 LRAAERTKEDA 317 >gi|152967151|ref|YP_001362935.1| S-adenosyl-methyltransferase MraW [Kineococcus radiotolerans SRS30216] gi|263456185|sp|A6WCY2|RSMH_KINRD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|151361668|gb|ABS04671.1| S-adenosyl-methyltransferase MraW [Kineococcus radiotolerans SRS30216] Length = 391 Score = 328 bits (842), Expect = 6e-88, Method: Composition-based stats. Identities = 109/326 (33%), Positives = 171/326 (52%), Gaps = 10/326 (3%) Query: 1 MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM 57 ++ ++ + H H V+LE+ +L+PA PG V +D T G GG++ + Sbjct: 9 VQGRAGEGAEERAHDAARRHASVMLERCTRVLSPALDHPGAVTVDVTLGMGGHAHELLRR 68 Query: 58 GS--NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLG 112 ++ +DRDP A+ + ++ ++ +L + L + + D G VD V FDLG Sbjct: 69 HPGLRLVGMDRDPQALELAAHRLHEFADRITLVHSVSDGLGEALDDLGLDTVDAVFFDLG 128 Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCSGIS-ASDVVNQANVKDLTRILGILGEEKQASR 171 VSS+Q+D +RGFS+ + LDMRM + A+DV+N + LTRIL + GEE+ A R Sbjct: 129 VSSLQLDEAERGFSYARDTALDMRMDPGAPTTAADVLNTYSHSQLTRILRVYGEERFAPR 188 Query: 172 IAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQ 230 IA AIV+ R PF ++ L L++ V + + +PA R+FQALRI VN+E+ + + Sbjct: 189 IASAIVRERALEPFTSSARLVDLVRANVPAATRRTGGNPAKRTFQALRIEVNDELGVVER 248 Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK 290 L A + L G L V++FHSLEDR+VK S + +T+ Sbjct: 249 SLPVAFERLAPEGRLAVLTFHSLEDRIVKNALRELSSSSAPPDLPFVPAGSGPRAELLTR 308 Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMR 316 + ++A N R+ SA+LRA R Sbjct: 309 GGETADEAELAENPRAASARLRAVRR 334 >gi|62260134|gb|AAX77882.1| unknown protein [synthetic construct] Length = 340 Score = 328 bits (842), Expect = 6e-88, Method: Composition-based stats. Identities = 119/321 (37%), Positives = 181/321 (56%), Gaps = 16/321 (4%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVS 72 H + H VLL++ I LN P + +DATFG GG+S++ +IA D+D A+S Sbjct: 23 HMLEMHYSVLLQESINDLNINPQGIYIDATFGRGGHSKAILNRLTTGRLIAFDKDLDAIS 82 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128 +E + F + A+F+ + DY +DG++ DLGVSS Q+D RGFSF Sbjct: 83 YARENFQF--SNFEIVHASFASIYDYCLQHSLLGKIDGIIMDLGVSSPQLDNAARGFSFT 140 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQ 186 +GPLDMRM S GI+AS + + +V DL+ I + GEE+ A +IA I +Q+ + Sbjct: 141 HNGPLDMRMDVSKGITASQALEELSVDDLSYIFKVYGEERFAKKIALRIKDYIQQNGSIR 200 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T +L+ LI T+ K + +PATR FQALRI+VNNE+++L L + +K+GG + Sbjct: 201 KTLELAELILATI--GKKEKKNPATRCFQALRIYVNNELKDLEALLENILAVIKSGGRIA 258 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRH---MIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 +SFHSLEDR+VK+ F++ + M+P ++ + ITKK ++++ N Sbjct: 259 AISFHSLEDRIVKQKFSALINPKQELNRITKMLPQDSSQIKLKWITKKS-KANEDELNQN 317 Query: 304 RRSRSAKLRAGMRTVERSIED 324 RSRSA LR + + D Sbjct: 318 VRSRSAILRVVEKLYPYDVPD 338 >gi|291457557|ref|ZP_06596947.1| S-adenosyl-methyltransferase MraW [Bifidobacterium breve DSM 20213] gi|291380610|gb|EFE88128.1| S-adenosyl-methyltransferase MraW [Bifidobacterium breve DSM 20213] Length = 350 Score = 328 bits (842), Expect = 6e-88, Method: Composition-based stats. Identities = 119/318 (37%), Positives = 167/318 (52%), Gaps = 14/318 (4%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 H PVLL+ + L+ PA G V +D T G G+S +F K +I +DRD A++ Sbjct: 8 HQPVLLDDCVNLVAPALQHEGAVAVDCTLGLAGHSTAFLKAAPQARLIGIDRDSEALALA 67 Query: 75 QETM--RDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQK 129 E M ++F+ A F QL + D+GV D V DLG+SS+QID DRGFS+ Sbjct: 68 TERMVQEGLSDRFTPVHAAFDQLDQVLADQGVERVDAVFMDLGLSSLQIDETDRGFSYSH 127 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM S ++A ++ ++ L R+ GEE+ A +IA IV RR PF TT Sbjct: 128 DAPLDMRMDVSQNLTAERILADYDMASLIRVFREYGEERFARQIAREIVSRRTQTPFTTT 187 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L++L++ V + +PA R FQALRI VN E+++L+ L A L+ GG L+V Sbjct: 188 GQLNALVEDVVPKAHRPAGNPAKRVFQALRIEVNGELDKLSSILPQAANRLQVGGRLVVE 247 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 S+HSLED+ VK F A I + F+ +T+ + E+ N RS S Sbjct: 248 SYHSLEDKTVKSFMAQGLKIDAPANLPIVPDDAQPFFRELTRGAIKADDEERQRNPRSAS 307 Query: 309 AKLRAGM---RTVERSIE 323 +LRA R ER E Sbjct: 308 VRLRAVELSRRIPERWRE 325 >gi|307294504|ref|ZP_07574346.1| S-adenosyl-methyltransferase MraW [Sphingobium chlorophenolicum L-1] gi|306878978|gb|EFN10196.1| S-adenosyl-methyltransferase MraW [Sphingobium chlorophenolicum L-1] Length = 321 Score = 328 bits (842), Expect = 7e-88, Method: Composition-based stats. Identities = 135/318 (42%), Positives = 199/318 (62%), Gaps = 11/318 (3%) Query: 9 MSSAIH--HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDR 66 MS+++ H+PVL+E+V+ L+ PG+ +D TFGAGGYS + G+ V A DR Sbjct: 1 MSASVDPAKDPDRHIPVLIEEVLHALSINPGEAHVDGTFGAGGYSSAMAAKGAKVFAFDR 60 Query: 67 DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDR 123 DP A+ GQ + +L FS+++ + ++GV GV D+GVSSMQ+D +R Sbjct: 61 DPDAIREGQALADEKG--ITLIAGEFSRMEALLAERGVTSVAGVTLDIGVSSMQLDRPER 118 Query: 124 GFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 GFSFQ GPLDM MS SG++A+D +N A +++ IL GEE ++ R+A AIV+ R Sbjct: 119 GFSFQGDGPLDMTMSQSGMNAADFLNNAPEEEIANILYRYGEEPRSRRVAKAIVEAR--- 175 Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 P + T L+++++K + +++ PATR+FQA+RI VN E+EEL +GL +AE L+ GG Sbjct: 176 PLERTGQLANIVRKALGHKPHDKKDPATRTFQAIRIHVNRELEELERGLEAAEAILEEGG 235 Query: 244 LLIVVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 L +V+FHSLEDR+VK+F +RS G+ RHM A PA + K V P + ++A Sbjct: 236 RLAIVTFHSLEDRIVKQFLRNRSGGEAGGSRHMPQKQAGPAPTFAKPAKAVRPGEAELAR 295 Query: 303 NRRSRSAKLRAGMRTVER 320 N R+RSA LR+ +RT Sbjct: 296 NPRARSATLRSAIRTAAP 313 >gi|76779305|gb|AAI06187.1| Methyltransferase 5 domain containing 1 [Mus musculus] Length = 406 Score = 328 bits (842), Expect = 7e-88, Method: Composition-based stats. Identities = 136/352 (38%), Positives = 189/352 (53%), Gaps = 44/352 (12%) Query: 2 ESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV 61 E K + M+ H+PV++++V+ L P G+V LD TFG+GG++R+ + +V Sbjct: 61 EEKELEAMAKL-------HIPVMVDQVVHCLAPQKGQVFLDMTFGSGGHTRAILQKEPDV 113 Query: 62 --IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVS 114 ALDRDP A + ++ R Y Q FSQ + + GV DG++ DLG Sbjct: 114 MVYALDRDPVAYAIAEQLSRLYPTQIQALLGQFSQAEALLMKAGVQPGTIDGILMDLGCP 173 Query: 115 SMQIDCGDRGFSFQKSGPLDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQAS 170 SMQ+D +RGFS +K GPLDMRM +ASDVVN + + L IL GEEK A Sbjct: 174 SMQLDAPERGFSLRKDGPLDMRMDGDRYPDTPTASDVVNALDQQALASILRAYGEEKHAK 233 Query: 171 RIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSK--------NNRIHPATRSFQALRIFVN 222 +IA AI++ R + P TQ L+S++ S H AT++FQALRIFVN Sbjct: 234 KIASAIIQARSTYPISRTQQLASIVAGAFPPSAVYARKDLLQRSTHIATKTFQALRIFVN 293 Query: 223 NEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKF-------------FASRSGKV 269 NE+ EL GLR+AEK LK GG L+ +SFHSLEDR+VK+F + + Sbjct: 294 NELNELYAGLRTAEKFLKTGGRLVALSFHSLEDRIVKRFLLGISMTERFNLSIRQKVKQT 353 Query: 270 MAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 + + P ++ I KKV+ P +DV N R RSAKLRA ++ Sbjct: 354 SQLDSDQETEERHSVRAPLKWELIHKKVLTPEDQDVQDNPRGRSAKLRAAIK 405 >gi|187930165|ref|YP_001900652.1| S-adenosyl-methyltransferase MraW [Ralstonia pickettii 12J] gi|262825235|sp|B2UCY5|RSMH_RALPJ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|187727055|gb|ACD28220.1| S-adenosyl-methyltransferase MraW [Ralstonia pickettii 12J] Length = 319 Score = 328 bits (842), Expect = 7e-88, Method: Composition-based stats. Identities = 113/323 (34%), Positives = 179/323 (55%), Gaps = 23/323 (7%) Query: 11 SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRD 67 + T H VLL++ + L + +D TFG GG+SR + G ++A D+D Sbjct: 2 TTQTSTGLRHQTVLLDEAVDALIWRDDGIYIDGTFGRGGHSRRILERLGPGGRLVAFDKD 61 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRG 124 P A++ +F++ +F+Q+ + +GV+ GV+ DLG+SS QID G RG Sbjct: 62 PAAITEAG---TVEDARFAIEHDSFAQMARCLDARGVEQVAGVLLDLGISSPQIDEGARG 118 Query: 125 FSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR--- 180 FSF+ GPLDMRM + GI+A+ + +A+ +D+ R++ GEE+ A +IA AIV RR Sbjct: 119 FSFRMDGPLDMRMDTTRGITAAQWLAEADERDIARVIRDYGEERFAVQIAKAIVARRGQS 178 Query: 181 -QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 P T +L++L+ + V + PATR+FQALRI VN E+ +L GL++A L Sbjct: 179 GDRGPLDRTSELAALVAQAVKT-REKGQDPATRTFQALRIHVNQELADLETGLKAAFDRL 237 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPS------NAHPAVFQSITKKVV 293 + GG L+V+SFHSLEDR+VK+F + + + + + + + V Sbjct: 238 EQGGRLVVISFHSLEDRIVKRFMQALARPEQSAAPELRRAPLRAHELPAPQLRLLGR--V 295 Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316 P++ +V+ N R+RSA +R R Sbjct: 296 KPSEAEVSANPRARSAIMRVAER 318 >gi|224419084|ref|ZP_03657090.1| S-adenosyl-methyltransferase MraW [Helicobacter canadensis MIT 98-5491] gi|253828022|ref|ZP_04870907.1| S-adenosyl-methyltransferase [Helicobacter canadensis MIT 98-5491] gi|313142594|ref|ZP_07804787.1| S-adenosyl-methyltransferase MraW [Helicobacter canadensis MIT 98-5491] gi|253511428|gb|EES90087.1| S-adenosyl-methyltransferase [Helicobacter canadensis MIT 98-5491] gi|313131625|gb|EFR49242.1| S-adenosyl-methyltransferase MraW [Helicobacter canadensis MIT 98-5491] Length = 311 Score = 328 bits (842), Expect = 7e-88, Method: Composition-based stats. Identities = 98/309 (31%), Positives = 165/309 (53%), Gaps = 16/309 (5%) Query: 19 DHVPVLLEKVIALLNP----APGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVS 72 H+ VL ++V+ N G +++D T G GG+S + + + I +D+D A++ Sbjct: 4 PHISVLKQEVLEAFNTEIINQKGGILIDCTLGFGGHSLALLEKYPKLKVIGIDQDDEAIA 63 Query: 73 CGQETMRDYKEQFSLFQATFSQ-LQDYV-PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 ++ + + ++FS+ FS L+ + + + G++ D+GVSSMQ D +RGF F Sbjct: 64 LAKKRLEPFCDRFSIEYGCFSGVLKQILQRENNIVGILADIGVSSMQFDSKERGFCFDSE 123 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM S +A D+VN + +L RI GE ++ ++A+ IV+ R+ + + Sbjct: 124 -FLDMRMDQSQNFTAKDIVNSYPLTELERIFRDFGEIREYKKLAYCIVELRKKEKITSAK 182 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA-EKALKAGGLLIVV 248 LS I K K+ +IHPAT +FQALRI VNNE+ EL L+ + ++ L ++ Sbjct: 183 MLSQFIAKHF---KHPKIHPATLAFQALRIEVNNELGELESMLKIFDSQTMQDCSRLCLI 239 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 SFHSLEDR++K F + + +S+ KK ++P +E++ N R+ Sbjct: 240 SFHSLEDRIIKNKFKQWENPCICPPQALKCECGRNHQKGRSLYKKPIIPKEEEIKDNPRA 299 Query: 307 RSAKLRAGM 315 RS+K+R Sbjct: 300 RSSKMRVFE 308 >gi|296140350|ref|YP_003647593.1| S-adenosyl-methyltransferase MraW [Tsukamurella paurometabola DSM 20162] gi|296028484|gb|ADG79254.1| S-adenosyl-methyltransferase MraW [Tsukamurella paurometabola DSM 20162] Length = 331 Score = 328 bits (841), Expect = 8e-88, Method: Composition-based stats. Identities = 111/309 (35%), Positives = 165/309 (53%), Gaps = 10/309 (3%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 HVPVL +V LL PA G + +DAT GAGG+S VI LDRD A Sbjct: 10 HVPVLATRVRELLAPALAHDGAIYVDATLGAGGHSELILDTFPNARVIGLDRDTDAHDIA 69 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + +F+ + + + D G VD ++FDLGVSSMQ+D +RGF++ Sbjct: 70 GARLARFGGRFTAVHTRYDAIAAALDDLGIETVDAILFDLGVSSMQLDRAERGFAYSVDA 129 Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ ++A+DV+N + DL RIL G+E+ A +IA A++K R+ PF T+ Sbjct: 130 PLDMRMNADDPLTAADVLNTYSHGDLARILQRYGDERFAGKIASAVLKEREREPFTTSGR 189 Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L L+ T+ ++ HPA R+FQALRI VN E+ L + A L G ++ +S Sbjct: 190 LVELLYATIPAPARRTGGHPAKRTFQALRIEVNAELASLESAVPQALDVLAPEGRIVFLS 249 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 + SLEDR+VK A+R+ + A F+ +T+ T E++A N+R+ Sbjct: 250 YQSLEDRIVKAELAARTRSTTPAGLPMDLPGTGATFELLTRGAERATDEEIAENQRAAPV 309 Query: 310 KLRAGMRTV 318 ++RA R Sbjct: 310 RMRAARRLA 318 >gi|309783013|ref|ZP_07677732.1| S-adenosyl-methyltransferase MraW [Ralstonia sp. 5_7_47FAA] gi|308918121|gb|EFP63799.1| S-adenosyl-methyltransferase MraW [Ralstonia sp. 5_7_47FAA] Length = 319 Score = 328 bits (841), Expect = 8e-88, Method: Composition-based stats. Identities = 117/323 (36%), Positives = 180/323 (55%), Gaps = 23/323 (7%) Query: 11 SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRD 67 + T H VLLE+ + L + +D TFG GG+SR + G ++A D+D Sbjct: 2 TTQASTALRHQTVLLEEAVDALIWRDDGIYIDGTFGRGGHSRRILERLGPGGRLVAFDKD 61 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRG 124 P A++ +F++ +F+Q+ + +G V GV+ DLG+SS QID G RG Sbjct: 62 PAAITEAG---TVEDARFAIEHDSFAQMAQCLDARGIERVAGVLLDLGISSPQIDEGARG 118 Query: 125 FSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR--- 180 FSF+ GPLDMRM + GI+A+ + +A+ +D+ R++ GEE+ A +IA AIV RR Sbjct: 119 FSFRMDGPLDMRMDTTRGITAAQWLAEADERDIARVIRDYGEERFAVQIAKAIVARRGQS 178 Query: 181 -QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 P T +L++L+ + V + PATR+FQALRI VN E+ +L GL++A + L Sbjct: 179 GDRGPLDRTSELAALVAQAVKT-REKGQDPATRTFQALRIHVNQELADLETGLKAAFERL 237 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRS---GKVMAVRHMIPSNAHP---AVFQSITKKVV 293 + GG L+V+SFHSLEDR+VK+F + + P AH + + + V Sbjct: 238 EQGGRLVVISFHSLEDRIVKRFMQALARPEQSAAPELRRAPLRAHELPTPQLRLLGR--V 295 Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316 P++ +V+ N R+RSA +R R Sbjct: 296 KPSEAEVSANPRARSAIMRVAER 318 >gi|148377639|ref|YP_001256515.1| S-adenosyl-methyltransferase [Mycoplasma agalactiae PG2] gi|263456537|sp|A5IYG2|RSMH_MYCAP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|148291685|emb|CAL59071.1| S adenosyl methyltransferase [Mycoplasma agalactiae PG2] Length = 300 Score = 328 bits (841), Expect = 8e-88, Method: Composition-based stats. Identities = 102/307 (33%), Positives = 155/307 (50%), Gaps = 15/307 (4%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQ 75 H+P+LL + I LN + LD T G GG+S K N ++ D+D FA+ + Sbjct: 3 NKHIPILLNEAIKSLNIKSDGIYLDLTVGMGGHSSEILKRLKNGLLVGFDKDLFAIEESR 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + F L + F+ + D + VDG++ DLG+SS Q+D +RGFS+ K Sbjct: 63 KRLSKIGSNFQLIHSDFNNVADELAKLNINAVDGILVDLGISSPQVDNAERGFSYSKDAR 122 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ + + A VVN + +L I E K A ++A+AI+K R P TT +L Sbjct: 123 LDMRMNTNQALDAHFVVNTYSEDELITIFYNYAEVKLAKQVANAIIKNR---PINTTLEL 179 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +I+ + +P FQA+RI VNNE + L A LK L +++FH Sbjct: 180 AEVIKSAYPAKLLSLKNPCKAVFQAIRIEVNNEFSSINSMLVQALNLLKKDSSLAIITFH 239 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLED ++KKFF + + I V KV P++ +++ N RSRSAKL Sbjct: 240 SLEDSIIKKFFGNLIKSKHPSKMPIKEEKKYIV------KVYSPSKAEISENNRSRSAKL 293 Query: 312 RAGMRTV 318 R + + Sbjct: 294 RVLTKLI 300 >gi|88801293|ref|ZP_01116821.1| S-adenosyl-methyltransferase MraW [Polaribacter irgensii 23-P] gi|88781951|gb|EAR13128.1| S-adenosyl-methyltransferase MraW [Polaribacter irgensii 23-P] Length = 299 Score = 328 bits (841), Expect = 8e-88, Method: Composition-based stats. Identities = 104/303 (34%), Positives = 155/303 (51%), Gaps = 17/303 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H PVLL++ + L + +D TFG GG+S+ + D+DP A+ E Sbjct: 4 HSPVLLKESVDALAIKENGIYVDVTFGGGGHSKEILSRLGDSGRLFGFDQDPDALENIIE 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +F+L F + ++ GV DG++ DLGVSS Q D DRGFS + G L Sbjct: 64 -----DARFTLIPENFRYISRFLRFHGVKKVDGILADLGVSSHQFDEADRGFSTRFDGDL 118 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ S +SA +V+ + + L IL + GE + + IA IV++RQ +T+ L Sbjct: 119 DMRMNQKSKVSAKEVIGTYSEEKLAEILFLYGELRNSRNIAKTIVEKRQEEKIETSFQLK 178 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +QK + + ++I + FQA+RI VN E+E L + L LK G L V+S+HS Sbjct: 179 EALQKYLPNAVEHKI--LAQIFQAVRIEVNEELEVLKEFLLQTPNLLKEKGRLSVISYHS 236 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDRLVK+F + + + P K++VP ++V N R+RSAKLR Sbjct: 237 LEDRLVKRFIRTGLFIGEPEKDFFGNIEVPMQK---VGKLIVPDAKEVKVNNRARSAKLR 293 Query: 313 AGM 315 Sbjct: 294 IAT 296 >gi|330826599|ref|YP_004389902.1| ribosomal RNA small subunit methyltransferase H [Alicycliphilus denitrificans K601] gi|329311971|gb|AEB86386.1| Ribosomal RNA small subunit methyltransferase H [Alicycliphilus denitrificans K601] Length = 308 Score = 328 bits (841), Expect = 9e-88, Method: Composition-based stats. Identities = 117/310 (37%), Positives = 170/310 (54%), Gaps = 16/310 (5%) Query: 20 HVPVLLEKVIALL---NPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSC 73 H VL + + L AP +D TFG GG++R + ++A D+DP A+ Sbjct: 7 HTTVLASEAVDALLGGAAAPVGTFVDGTFGRGGHARLILQRLGAQGRLVAFDKDPEAIH- 65 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 E R + +FS+ FS L + +P V GV+ DLG+SS QID RGFSF+ GPL Sbjct: 66 --EAARIHDARFSIQHQGFSHLGE-LPAASVAGVLLDLGISSPQIDDPARGFSFRFDGPL 122 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR-QSAPFQTTQDL 191 DMRM + G S ++ + A + ++ GEE+ A IA AIV RR Q P T +L Sbjct: 123 DMRMDTTRGQSVAEWLAGAEAAQIAEVIRDYGEERFAGPIAKAIVARRTQGGPIVGTAEL 182 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ V + + +PATR+FQA RIF+N E+EEL Q L ++ L GG L+V+SFH Sbjct: 183 ADIVAGAVKTREPGQ-NPATRTFQAFRIFINAELEELQQALEASLTVLAPGGRLVVISFH 241 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+VK+F A S + M R + P +++ + V P+ +V N R+RSA + Sbjct: 242 SLEDRIVKQFIARHSKE-MFDRRAPFAAPTPMRLKALGR--VKPSAAEVVANPRARSAVM 298 Query: 312 RAGMRTVERS 321 R RT + Sbjct: 299 RVAERTEVPA 308 >gi|291519055|emb|CBK74276.1| S-adenosyl-methyltransferase MraW [Butyrivibrio fibrisolvens 16/4] Length = 289 Score = 328 bits (841), Expect = 9e-88, Method: Composition-based stats. Identities = 88/283 (31%), Positives = 145/283 (51%), Gaps = 9/283 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76 +H VLL + + LN P + +D T G GG+S ++ D+D A+ E Sbjct: 4 NHYSVLLYETVDNLNIKPDGIYVDGTLGGGGHSFEIASRLTTGHLYGFDQDTDALKAAGE 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQ-KSGP 132 + Y ++ + + + +++ + + GV DG++ DLGVSS Q+D DRGF+++ P Sbjct: 64 RLACYGDKVTRIHSNYEFMKERLAELGVTKVDGIMLDLGVSSFQLDEADRGFTYRVDDAP 123 Query: 133 LDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM +A+D+VN + +DLTR+L GEEK + +I I+K R+ AP T L Sbjct: 124 LDMRMDKDNPMTAADIVNTYSAEDLTRVLFTYGEEKFSKQIVKNIIKEREKAPILTAGQL 183 Query: 192 SSLIQKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 + +I +++ + HP+ R++QALRI +N E+ L + L GG L +++F Sbjct: 184 NKIIAESIPKKAQVGQGHPSKRTYQALRIELNRELTVLEDHIDDMIDLLNPGGRLCIITF 243 Query: 251 HSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKV 292 HSLEDR+ K F + + +S +K Sbjct: 244 HSLEDRITKVAFKRNEDPCTCPKNFPVCVCGKKIKGKSGYEKA 286 >gi|239813918|ref|YP_002942828.1| S-adenosyl-methyltransferase MraW [Variovorax paradoxus S110] gi|263504487|sp|C5CNE6|RSMH_VARPS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|239800495|gb|ACS17562.1| S-adenosyl-methyltransferase MraW [Variovorax paradoxus S110] Length = 307 Score = 328 bits (841), Expect = 9e-88, Method: Composition-based stats. Identities = 127/313 (40%), Positives = 175/313 (55%), Gaps = 16/313 (5%) Query: 15 HTIGDHVPVLLEKVIALL---NPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDP 68 +T H VLL + + L + A +DATFG GG++R+ +IA D+D Sbjct: 2 NTPWTHTTVLLNEAVEALLSGSTAATGTYVDATFGRGGHARAILARLAPEGRLIAFDKDA 61 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 AV+ E R +FS+ F L + +PD V GV+ DLGVSS QID RGFSF+ Sbjct: 62 EAVA---EAARISDARFSIRHQGFRSLGE-LPDASVAGVLMDLGVSSPQIDNPVRGFSFR 117 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA-PFQ 186 GPLDMRM + G S +D + A ++ + ++ GEE+ A +IA AIV RRQ Sbjct: 118 FDGPLDMRMDTTRGESVADWLATAELQQIAEVIRDYGEERFAVQIAKAIVARRQERGAIS 177 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 TT +L+ L+ TV + + +PATR+FQA RIF+N E+EEL Q L ++ L+ GG L Sbjct: 178 TTSELAELVAGTVKTREPGQ-NPATRTFQAFRIFINAELEELQQALEASLSVLQPGGRLA 236 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+SFHSLEDR+VK+F A S +V R A P + + + P+ +V N RS Sbjct: 237 VISFHSLEDRIVKQFIARHSKEVYDRRAPF---AAPKAMKLRALERIKPSDAEVHGNPRS 293 Query: 307 RSAKLRAGMRTVE 319 RSA LR RT E Sbjct: 294 RSAILRVAERTQE 306 >gi|296217807|ref|XP_002755199.1| PREDICTED: putative S-adenosyl-L-methionine-dependent methyltransferase METT5D1 [Callithrix jacchus] Length = 406 Score = 328 bits (841), Expect = 9e-88, Method: Composition-based stats. Identities = 131/352 (37%), Positives = 189/352 (53%), Gaps = 44/352 (12%) Query: 2 ESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN- 60 + ++ +TM + H+PV++++V+ L+P G++ LD TFG+GG++++ + S+ Sbjct: 61 QDRNFETM-------VKLHIPVMVDEVVHCLSPQKGQIFLDMTFGSGGHTKAILQKESDI 113 Query: 61 -VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVS 114 + ALDRDP A + + Y +Q FSQ + + V DGV+ DLG S Sbjct: 114 VLYALDRDPTAYALAEHLSELYPKQIRAMLGRFSQAETLLMKAEVQPGTFDGVLMDLGCS 173 Query: 115 SMQIDCGDRGFSFQKSGPLDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQAS 170 SMQ+D +RGFS +K GPLDMRM +A+DVVN + + L IL GEEK A Sbjct: 174 SMQLDTSERGFSLRKDGPLDMRMDGDRYPDMPTAADVVNALDQQALASILRAYGEEKHAK 233 Query: 171 RIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSK--------NNRIHPATRSFQALRIFVN 222 +IA AIV+ R P TQ L+S+I S H AT++FQALRIFVN Sbjct: 234 KIASAIVQARSIYPITRTQQLASIIAGAFPPSAIYARKDLLQRSTHIATKTFQALRIFVN 293 Query: 223 NEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKF------------------FAS 264 NE+ EL GL++A+K L+ GG L+ +SFHSLEDR+VK+F + Sbjct: 294 NELNELHTGLKTAQKFLRPGGRLVALSFHSLEDRIVKRFLLGISMTERFNLSVRQQVMKA 353 Query: 265 RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 + P +++ I KKV+ P DV N R RSAKLRA ++ Sbjct: 354 SRLDSDHENVEVSMRRAPLMWELIHKKVLSPQSRDVQDNPRGRSAKLRAAIK 405 >gi|119026127|ref|YP_909972.1| S-adenosyl-methyltransferase MraW [Bifidobacterium adolescentis ATCC 15703] gi|263445943|sp|A1A2F7|RSMH_BIFAA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|118765711|dbj|BAF39890.1| S-adenosyl-methyltransferase [Bifidobacterium adolescentis ATCC 15703] Length = 343 Score = 328 bits (841), Expect = 1e-87, Method: Composition-based stats. Identities = 108/307 (35%), Positives = 159/307 (51%), Gaps = 11/307 (3%) Query: 20 HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 H PVLL + L+ P PG + +D T G G+S +F K +I +DRD A++ Sbjct: 8 HQPVLLRDCVDLVAPALAKPGSIAVDCTLGLAGHSTAFLKASPNARLIGIDRDTEALALA 67 Query: 75 QETMR--DYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQK 129 + M ++F+ A F + D+GVD V DLG+SS+QID +RGFS+ Sbjct: 68 TKRMEMEGLADRFTPVHAAFDDFSQVLSDQGVDKVNAVFMDLGLSSLQIDETERGFSYSH 127 Query: 130 SGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM ++A V+ + + DL RI GEE+ + +IA IV+RR++ P T+ Sbjct: 128 DAPLDMRMDVTQPLTAEQVLAEYSFADLVRIFRAYGEERFSKQIAREIVRRRETEPLTTS 187 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ L+ + V + +PA R FQALRI VN E+++LA L L GG L+V Sbjct: 188 GQLNRLVDEVVPQAHRPAGNPAKRVFQALRIEVNGELDKLAGTLPQIANHLAVGGRLVVE 247 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 S+HSLED+ VK F + F+ +T+ + E++A N RS S Sbjct: 248 SYHSLEDKTVKAFMNQGLKVDAPADMPVVPPDMMPFFKELTRGAIKADAEEIANNPRSAS 307 Query: 309 AKLRAGM 315 +LRA Sbjct: 308 VRLRAVE 314 >gi|332663143|ref|YP_004445931.1| ribosomal RNA small subunit methyltransferase H [Haliscomenobacter hydrossis DSM 1100] gi|332331957|gb|AEE49058.1| Ribosomal RNA small subunit methyltransferase H [Haliscomenobacter hydrossis DSM 1100] Length = 298 Score = 327 bits (840), Expect = 1e-87, Method: Composition-based stats. Identities = 103/305 (33%), Positives = 163/305 (53%), Gaps = 17/305 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H PVL + I LN G +DATFG GG++R + + +I D+D A + Sbjct: 4 HNPVLASEAIEALNIQAGGTYVDATFGGGGHARLILQALDENARLIGFDQDEDAQRNALD 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +F+ F L+ ++ VDG++ DLGVSS Q++ +RGFSF+ L Sbjct: 64 -----DPRFTFVPHNFRFLRRFLRLHDAVEVDGILADLGVSSHQLNEAERGFSFRFDTQL 118 Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ G SA+DV+ +L + G LGE + + +A AIV+ RQ P ++ DL Sbjct: 119 DMRMNQQGERSAADVLATYTEAELQNMFGTLGEVRNSRTLAQAIVRERQVRPMRSISDLL 178 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +++ V +N + FQALR+ VN+E+ L L + + LK GG L+++++HS Sbjct: 179 AVLDPLVRGQRNR---YLAQVFQALRMEVNDEVGALQDFLEQSLQVLKPGGRLVIIAYHS 235 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 +EDR+VK F +GKV F+ IT+K ++P++ ++ N RSRSAK+R Sbjct: 236 IEDRMVKNFIK--TGKVDGEMEQDFYGNITRPFEVITRKAMLPSEIEIKANPRSRSAKMR 293 Query: 313 AGMRT 317 ++ Sbjct: 294 VAVKI 298 >gi|42526707|ref|NP_971805.1| S-adenosyl-methyltransferase MraW [Treponema denticola ATCC 35405] gi|85701364|sp|P62477|RSMH_TREDE RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|41817022|gb|AAS11716.1| S-adenosyl-methyltransferase MraW [Treponema denticola ATCC 35405] Length = 315 Score = 327 bits (840), Expect = 1e-87, Method: Composition-based stats. Identities = 102/306 (33%), Positives = 162/306 (52%), Gaps = 8/306 (2%) Query: 20 HVPVLLEKVIALLNP-APGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76 H VLLE+ + L P A + +D T G GG++ +F K + I +D D +E Sbjct: 5 HTSVLLEECLEFLKPDASDNLFVDGTLGEGGHTEAFLKRYPQLNAIGVDADVSIQERAKE 64 Query: 77 TMRDYKEQFSLFQATFSQL-QDYVPDKGV-DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++ + E+ + ++Y D + ++ DLG+S RGFSF PLD Sbjct: 65 RLKPFGERIRFHLGWSDEFFKNYPKDFAPPNLILLDLGISMFHYVKSGRGFSFSSDEPLD 124 Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MR++ +SA+D+VN N KDL ++ GEE+ + +IA IV++R +A F ++L+ Sbjct: 125 MRLNPELRLSAADIVNSYNEKDLADLIFNYGEERYSRKIASRIVEQRAAAAFSNAKELAD 184 Query: 194 LIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 I K V + ++ +IHPAT++FQALRI VN E++ L + L +A L G L +++FHS Sbjct: 185 CIYKAVPQNYRHGKIHPATKTFQALRIAVNGELDRLPRLLEAAFSVLAPNGRLGLITFHS 244 Query: 253 LEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK +F + I + +TKK V + E++ N SRSA+L Sbjct: 245 LEDRIVKFYFKELGKSCTCPENMPICKCGGRPRAEVLTKKAVKASDEEIRLNPPSRSARL 304 Query: 312 RAGMRT 317 R + Sbjct: 305 RVVRKI 310 >gi|291320327|ref|YP_003515589.1| S adenosyl methyltransferase [Mycoplasma agalactiae] gi|290752660|emb|CBH40633.1| S adenosyl methyltransferase [Mycoplasma agalactiae] Length = 300 Score = 327 bits (840), Expect = 1e-87, Method: Composition-based stats. Identities = 102/307 (33%), Positives = 156/307 (50%), Gaps = 15/307 (4%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQ 75 H+P+LL + I LN + LD T G GG+S K N ++ D+D FA+ + Sbjct: 3 NKHIPILLNEAIESLNIKSNGIYLDLTVGMGGHSSEILKRLKNGLLVGFDKDLFAIEESR 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + F L + F+ + D + VDG++ DLG+SS Q+D +RGFS+ K Sbjct: 63 KRLSKIGSNFQLIHSDFNNVADELAKLNISAVDGILVDLGISSPQVDNAERGFSYSKDAR 122 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ + + A VVN + +L I E K A ++A+AI+K+R P TT +L Sbjct: 123 LDMRMNTNQALDAHFVVNNYSEDELITIFYNYAEVKLAKQVANAIIKKR---PINTTLEL 179 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +I+ + +P FQA+RI VNNE + L A LK L +++FH Sbjct: 180 AEVIKSAYPAKLLSLKNPCKAVFQAIRIEVNNEFSSINSMLVQALNLLKKDSSLAIITFH 239 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLED ++KKFF + + I V KV P++ +++ N RSRSAKL Sbjct: 240 SLEDSIIKKFFGNLIKSKHPSKMPINEEKKYIV------KVYSPSKAEISENNRSRSAKL 293 Query: 312 RAGMRTV 318 R + + Sbjct: 294 RVLTKLI 300 >gi|269127144|ref|YP_003300514.1| S-adenosyl-methyltransferase MraW [Thermomonospora curvata DSM 43183] gi|268312102|gb|ACY98476.1| S-adenosyl-methyltransferase MraW [Thermomonospora curvata DSM 43183] Length = 337 Score = 327 bits (840), Expect = 1e-87, Method: Composition-based stats. Identities = 104/310 (33%), Positives = 171/310 (55%), Gaps = 14/310 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPA-------PGKVILDATFGAGGYSRSFCKMGSNV 61 M + H+PVLL++V++LL PA + +DAT G GG++ + + + Sbjct: 1 MQDSACAAQAGHIPVLLDRVLSLLAPAVESAPAGRDPLYVDATLGMGGHAEAMLQAHPRL 60 Query: 62 --IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSM 116 I LDRDP A+ + + ++ L A + +L + + G + ++FDLGVSS Sbjct: 61 RLIGLDRDPSAIERAGRRLARFADRVRLVHAVYDELPRVLAELGEPHAEAILFDLGVSSP 120 Query: 117 QIDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175 Q+D +RGF++ PLDMRM + ++A+DVVN ++L RIL GEE+ A RIA A Sbjct: 121 QLDEAERGFAYSYDAPLDMRMDPTQPLTAADVVNGYPPEELARILREYGEERHARRIAAA 180 Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234 I + R+ AP ++T L+ L+++ + ++ + +PA R+FQALRI VN E+ + L + Sbjct: 181 IERERRRAPLRSTGRLAELVRQAIPAPARRSGGNPAKRTFQALRIEVNGELAIWERALPA 240 Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVV 294 A +AL GG + V+S+HSLEDR+ K+ + S + H F+ +T+ Sbjct: 241 ALQALPVGGRVAVLSYHSLEDRITKRVLTACSTDTTPPGLPVSLPEHRPTFRLLTRGAET 300 Query: 295 PTQEDVAFNR 304 P +E++ N Sbjct: 301 PGEEEITANP 310 >gi|296166032|ref|ZP_06848481.1| S-adenosyl-methyltransferase MraW [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295898597|gb|EFG78154.1| S-adenosyl-methyltransferase MraW [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 334 Score = 327 bits (840), Expect = 1e-87, Method: Composition-based stats. Identities = 120/333 (36%), Positives = 183/333 (54%), Gaps = 18/333 (5%) Query: 12 AIHHTIGDHVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKMGS--NV 61 A + HVPVLL + + LL PA G V+LDAT GAGG++ F + Sbjct: 2 ANDSSAFGHVPVLLGRCVELLTPALTRHDADGSGAVLLDATLGAGGHAERFLTDLPGLRL 61 Query: 62 IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSS 115 I LDRDP A+ + + + ++ +L + L + + G VDG++FDLGVSS Sbjct: 62 IGLDRDPNALEITRARLARFADRITLVHTRYDGLAAALAESGYGAIESVDGMLFDLGVSS 121 Query: 116 MQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAH 174 MQ+D +RGF++ + PLDMRM S ++A+D++N + L IL GEE+ A RIA Sbjct: 122 MQLDRAERGFAYAQDAPLDMRMDPESPLTAADILNTYDEAALADILHRYGEERFARRIAA 181 Query: 175 AIVKRRQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLR 233 +V+RR APF +T DL +L+ + + ++ HPA R+FQALRI VN+E+ L Sbjct: 182 QVVRRRARAPFASTADLVALLYQAIPAPARRTGGHPAKRTFQALRIAVNDELNSLRAATP 241 Query: 234 SAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV 293 + AL GG ++V+++ SLEDR+VK+ FA+ V + H F+S+T Sbjct: 242 AGLDALAVGGRMVVLAYQSLEDRIVKRLFAAAVASRTPVDLPVELPGHEPRFRSLTHGAE 301 Query: 294 VPTQEDVAFNRRSRSAKLRAGMRTVERSIEDDS 326 ++V N RS + +LRA R + + + D+ Sbjct: 302 RADADEVERNPRSAAVRLRAVQRVQQSTGKADA 334 >gi|38234181|ref|NP_939948.1| S-adenosyl-methyltransferase MraW [Corynebacterium diphtheriae NCTC 13129] gi|42559424|sp|P60395|RSMH_CORDI RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|38200443|emb|CAE50131.1| Conserved hypothetical protein [Corynebacterium diphtheriae] Length = 339 Score = 327 bits (840), Expect = 1e-87, Method: Composition-based stats. Identities = 108/319 (33%), Positives = 172/319 (53%), Gaps = 23/319 (7%) Query: 20 HVPVLLEKVIALLNPA-----PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVS 72 HVPVL ++ L+ P VI+D T GAGG+S+ F + VI LDRD +++ Sbjct: 19 HVPVLRARMAELIAPKVTAMGSDAVIIDGTLGAGGHSKYFLESFPEARVIGLDRDTNSLA 78 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD--------------KGVDGVVFDLGVSSMQI 118 +E ++++ ++F F + + + +G+ G +FDLGVSSMQ+ Sbjct: 79 SARERLKEFGDRFLGIHTRFDRFAPKLEELAQSGNPIAATALEQGISGALFDLGVSSMQL 138 Query: 119 DCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177 D +RGF+++ PLDMRM + GI+A+DV+N + +L RIL G+E+ A +IA AIV Sbjct: 139 DQAERGFAYRVDAPLDMRMDNTIGITAADVLNTYSHGELARILKTYGDERFAGKIASAIV 198 Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236 + R+ PF T+ L L+ T+ + + HPA R+FQALRI VN E+E L L Sbjct: 199 REREKEPFDTSARLVELLYATIPAATRRTGGHPAKRTFQALRIEVNRELESLENVLPEIT 258 Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296 + L GG + +S+ SLED++VK++F S + + F+ +T+ T Sbjct: 259 QRLTTGGRAVFMSYQSLEDKIVKRYFVDISTSKTPPGLPMELPEYAPKFKVVTRGAEKAT 318 Query: 297 QEDVAFNRRSRSAKLRAGM 315 ++ N R+ S ++RA Sbjct: 319 DAEIEENPRAASVRVRAIE 337 >gi|319764380|ref|YP_004128317.1| s-adenosyl-methyltransferase mraw [Alicycliphilus denitrificans BC] gi|317118941|gb|ADV01430.1| S-adenosyl-methyltransferase MraW [Alicycliphilus denitrificans BC] Length = 308 Score = 327 bits (840), Expect = 1e-87, Method: Composition-based stats. Identities = 117/310 (37%), Positives = 170/310 (54%), Gaps = 16/310 (5%) Query: 20 HVPVLLEKVIALL---NPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSC 73 H VL + + L AP +D TFG GG++R + ++A D+DP A+ Sbjct: 7 HTTVLASEAVDALLGGAAAPVGTFVDGTFGRGGHARLILQRLGAQGRLVAFDKDPEAIH- 65 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 E R + +FS+ FS L + +P V GV+ DLG+SS QID RGFSF+ GPL Sbjct: 66 --EAARIHDARFSIRHQGFSHLGE-LPAASVAGVLLDLGISSPQIDDPARGFSFRFDGPL 122 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR-QSAPFQTTQDL 191 DMRM + G S ++ + A + ++ GEE+ A IA AIV RR Q P T +L Sbjct: 123 DMRMDTTRGQSVAEWLAGAEAAQIAEVIRDYGEERFAGPIAKAIVARRTQGGPIVGTAEL 182 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ V + + +PATR+FQA RIF+N E+EEL Q L ++ L GG L+V+SFH Sbjct: 183 ADIVAGAVKTREPGQ-NPATRTFQAFRIFINAELEELQQALEASLTVLAPGGRLVVISFH 241 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+VK+F A S + M R + P +++ + V P+ +V N R+RSA + Sbjct: 242 SLEDRIVKQFIARHSKE-MFDRRAPFAAPTPMRLKALGR--VKPSAAEVVANPRARSAVM 298 Query: 312 RAGMRTVERS 321 R RT + Sbjct: 299 RVAERTEVPA 308 >gi|256825484|ref|YP_003149444.1| S-adenosyl-methyltransferase MraW [Kytococcus sedentarius DSM 20547] gi|256688877|gb|ACV06679.1| S-adenosyl-methyltransferase MraW [Kytococcus sedentarius DSM 20547] Length = 335 Score = 327 bits (840), Expect = 1e-87, Method: Composition-based stats. Identities = 117/320 (36%), Positives = 177/320 (55%), Gaps = 11/320 (3%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPAPGKV----ILDATFGAGGYSRSFCKM--GSNVIA 63 + T HVPV+L +++ LL PA V LD T G GG++ + + + V+ Sbjct: 5 TDGQPPTSTRHVPVMLPRILDLLAPALDGVDGAVHLDGTLGMGGHAEALLERFGHARVVG 64 Query: 64 LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDC 120 +DRDP A+ E + + +F T+ ++ + GVD ++FDLGVSS+Q+D Sbjct: 65 IDRDPQAIELASERLARFGHRFVAHHGTYDEVGPALDRLGVDSAQSMLFDLGVSSLQLDE 124 Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 RGFS+ ++ PLDMRM+ + G SA+DV+N DL R+L GEE+ A +IA A+++ Sbjct: 125 VGRGFSYSRNAPLDMRMNPTVGQSAADVLNTYGHGDLARVLKEYGEERFAGKIASAVLRE 184 Query: 180 RQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R++ PF + L L+++TV + + HPA R+FQALRI VN+E+ A + A Sbjct: 185 RETEPFTDSARLVELLERTVPAASQRTGGHPAKRTFQALRIEVNSELSIWATTVHRALDH 244 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L GG L V+S+HSLEDRL K+ FA+ + + H + T+ P + Sbjct: 245 LAVGGRLAVLSYHSLEDRLTKQAFAAGATSSAPEGLPVELPEHAPWLRLATRGAEQPDEG 304 Query: 299 DVAFNRRSRSAKLRAGMRTV 318 + A NRRS SA+LR RT Sbjct: 305 ERAVNRRSSSARLRVAERTR 324 >gi|319953733|ref|YP_004165000.1| ribosomal RNA small subunit methyltransferase h [Cellulophaga algicola DSM 14237] gi|319422393|gb|ADV49502.1| Ribosomal RNA small subunit methyltransferase H [Cellulophaga algicola DSM 14237] Length = 302 Score = 327 bits (839), Expect = 1e-87, Method: Composition-based stats. Identities = 106/307 (34%), Positives = 160/307 (52%), Gaps = 17/307 (5%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSC 73 + H PVLL++ I LN + +D TFG GG+S + A D+D A+ Sbjct: 1 MSYHNPVLLKESIDGLNIKSDGIYVDVTFGGGGHSTEILSRLGAKGKLYAFDQDEDALKN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + E+F L F + ++ G VDG++ D GVSS Q D +RGFS + Sbjct: 61 AID-----DERFVLIHENFRFISQFLKFYGIKKVDGILGDFGVSSHQFDVAERGFSTRFD 115 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRMS + +SA DVVN DL R+L G+ + A+ IA AI+ R+ P +TT Sbjct: 116 ADLDMRMSKRNAVSAYDVVNTYAYDDLRRVLFQYGDLRNANAIATAIIANREETPIKTTD 175 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L S +++ + ++I + +QA+RI VN EIE + + L L G L V+S Sbjct: 176 QLKSGLKQFLPARVEHKI--LAQIYQAIRIEVNQEIEVIKEFLLQVPDLLNEEGRLSVIS 233 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 +HSLEDRLVK FF S + + + + P + + + VP+++++A N R+RSA Sbjct: 234 YHSLEDRLVKNFFRSGKFEGEPDKDFYGNMSLP--LKKV-GGLTVPSKKEIAGNNRARSA 290 Query: 310 KLRAGMR 316 KLR + Sbjct: 291 KLRIAEK 297 >gi|229490464|ref|ZP_04384305.1| S-adenosyl-methyltransferase MraW [Rhodococcus erythropolis SK121] gi|229322754|gb|EEN88534.1| S-adenosyl-methyltransferase MraW [Rhodococcus erythropolis SK121] Length = 336 Score = 327 bits (839), Expect = 1e-87, Method: Composition-based stats. Identities = 111/319 (34%), Positives = 171/319 (53%), Gaps = 18/319 (5%) Query: 20 HVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69 HVPVLL + LL PA G ++DAT G GG+S F ++I LDRD Sbjct: 16 HVPVLLHRADDLLGPAITAVGDGGAGAYMIDATLGLGGHSEFFLGKYPGLHLIGLDRDTN 75 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSSMQIDCGDR 123 A+ E + + ++ + T+ ++D + G V ++FDLGVSSMQ+D DR Sbjct: 76 ALRIASERLAPFADRTTFVHTTYDGIEDALEQAGLPSTESVHAILFDLGVSSMQLDEADR 135 Query: 124 GFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GF++ PLDMRM + G++A++V+N + DL RIL GEE+ A +IA I+++R+ Sbjct: 136 GFAYSIDAPLDMRMDQTVGLTAAEVLNTYSHGDLARILSTYGEERFAGKIASEILRQRER 195 Query: 183 APFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 PF T+ L L+ +T+ + + HPA R+FQALRI VN E++ L + + AL Sbjct: 196 EPFTTSAALVELLYRTIPAATRRTGGHPAKRTFQALRIEVNAELDSLRAAVPAGLDALAV 255 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 GG ++ +S+ SLEDR+VK RS + F+ +T+ +++++ Sbjct: 256 GGRVVFMSYQSLEDRVVKAELVPRSKSTSPEGLPVELPGMGPEFRILTRGAERASEQEIE 315 Query: 302 FNRRSRSAKLRAGMRTVER 320 N RS +LRA R R Sbjct: 316 ENPRSAPVRLRAAERISRR 334 >gi|227494640|ref|ZP_03924956.1| S-adenosyl-methyltransferase [Actinomyces coleocanis DSM 15436] gi|226831822|gb|EEH64205.1| S-adenosyl-methyltransferase [Actinomyces coleocanis DSM 15436] Length = 344 Score = 327 bits (839), Expect = 1e-87, Method: Composition-based stats. Identities = 110/308 (35%), Positives = 184/308 (59%), Gaps = 12/308 (3%) Query: 20 HVPVLLEKVIALLNPAPGKV----ILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSC 73 H PVL+++V+ LL PA V ++DAT G GG++ + VI +DRDP A+ Sbjct: 22 HEPVLIDEVLDLLAPAFTGVEIATMIDATLGMGGHTEAVITAFPNVRVIGIDRDPNAIRL 81 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQK 129 + + + E+F AT+ + + + G +D V+ DLGVSS+Q+D +RGF++ + Sbjct: 82 ASKRLESFGERFKAVHATYDSVYEVAEENGLAGKIDAVLMDLGVSSLQLDDDERGFAYSR 141 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 + LDMRM + GI+A++++ A+ +LTRIL GEEK ASRIA I K+R++ P +T+ Sbjct: 142 NTYLDMRMDPTQGITAAELLATASAAELTRILRTFGEEKFASRIARNIEKQRETKPIETS 201 Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L+ +++ ++ + + +PA R+FQALR+ VN E++ LA + +A ++LK GG L+V Sbjct: 202 LELTEIVRASIPAAARRQGGNPAKRTFQALRVAVNEELDILADAVPAALESLKVGGRLVV 261 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 S+ SLEDR+VK S + + + +++T+K + T+E +A N R+ Sbjct: 262 ESYQSLEDRIVKNVIKDGSEINIPPGLPVIPDHLKPSLENVTRKAIQATEEQIADNPRAA 321 Query: 308 SAKLRAGM 315 S +LRA Sbjct: 322 SVRLRAAT 329 >gi|170287862|ref|YP_001738100.1| S-adenosyl-methyltransferase MraW [Thermotoga sp. RQ2] gi|262825881|sp|B1LCF9|RSMH_THESQ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|170175365|gb|ACB08417.1| S-adenosyl-methyltransferase MraW [Thermotoga sp. RQ2] Length = 299 Score = 327 bits (839), Expect = 1e-87, Method: Composition-based stats. Identities = 113/308 (36%), Positives = 179/308 (58%), Gaps = 29/308 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77 H+PV++ +VI L P K+ILD T G GG+SR+ + G +I +D D + +E Sbjct: 8 HIPVMVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEK 67 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++++ ++ SLF+ ++ + + GV DG++ DLGVS+ Q+ +RGF+F++ PLD Sbjct: 68 LKEFSDRASLFKISYREADFLLKTLGVEKVDGILMDLGVSTYQLKGENRGFTFEREEPLD 127 Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEK-QASRIAHAIVKRRQSAPFQTTQDLS 192 MRM S ++A V+N+ ++L RI+ GEEK A RIA IV+ R P TT DL Sbjct: 128 MRMDLESEVTAQKVLNELPEEELARIIFEYGEEKKFARRIARKIVENR---PLNTTLDLV 184 Query: 193 SLIQKTVYFS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +++ + + + H AT++FQA+RI+VN E+E L + LR AE L GG ++V+SF Sbjct: 185 KAVREALPSYEIRRRKRHFATKTFQAIRIYVNRELENLKEFLRKAEDLLNPGGRIVVISF 244 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDR+VK+ F + + +T+K V P++E++ N R+RS + Sbjct: 245 HSLEDRIVKETFRNSKK-----------------LRILTEKPVRPSEEEIRENPRARSGR 287 Query: 311 LRAGMRTV 318 LRA R Sbjct: 288 LRAAERIE 295 >gi|263447803|sp|Q2NIH4|RSMH_AYWBP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 303 Score = 327 bits (839), Expect = 1e-87, Method: Composition-based stats. Identities = 103/311 (33%), Positives = 161/311 (51%), Gaps = 13/311 (4%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70 ++ H+ VL ++ I L P + +DAT G G++ + + + D+D A Sbjct: 1 MNKQNFHHISVLKKEAIDFLKIKPEGIYVDATLGQCGHTIEIANLLQQGFLYSFDQDVEA 60 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYV--PDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + ++T+ + + + F +DG++FDLG+SS QID RGFS+ Sbjct: 61 CTNAKKTLSPHLP-IEIIHSIFRIXSPISTTKSFSLDGILFDLGLSSCQIDNPQRGFSYL 119 Query: 129 KSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + PLDMRM+ + I+A ++N + L I + GE K AS + I+K+R P QT Sbjct: 120 HNTPLDMRMNINQTITAQYILNNYSFAQLKNIFKLYGEVKNASLVVSEIIKQR---PLQT 176 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 + DL S+ + + H A + FQALRI VN E+E L Q L + LK ++V Sbjct: 177 SYDLVSITDRFCNL---QKGHSAKKIFQALRIEVNQELESLKQALEQSLDLLKPNARIVV 233 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +SFHSLEDR++K FF S V+ + I + ITKK +P++E++ N RS Sbjct: 234 ISFHSLEDRIIKHFFKKHSTFVLPKKLPI-AIIPQTPLSIITKKAFLPSEEEMQNNSRSI 292 Query: 308 SAKLRAGMRTV 318 SAKLR ++ V Sbjct: 293 SAKLRVAVKNV 303 >gi|89898443|ref|YP_515553.1| S-adenosyl-methyltransferase MraW [Chlamydophila felis Fe/C-56] gi|123483153|sp|Q253Y0|RSMH_CHLFF RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|89331815|dbj|BAE81408.1| tRNA/rRNA methyltransferase [Chlamydophila felis Fe/C-56] Length = 298 Score = 327 bits (839), Expect = 2e-87, Method: Composition-based stats. Identities = 117/314 (37%), Positives = 159/314 (50%), Gaps = 25/314 (7%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI---ALD 65 MS A H+PVL+ + ++L K D T GAGG++ +F +++ D Sbjct: 1 MSEAPQ-----HIPVLVNECLSLFADRNPKFFCDVTLGAGGHAEAFLSAYPSIVSYDGSD 55 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125 RD A+S +E + + + L A+F L + DG++ DLGVSSMQ+D RGF Sbjct: 56 RDTMALSLAKERLEKFGNRVHLHHASFEDLAQNPRENVYDGILADLGVSSMQLDTLSRGF 115 Query: 126 SFQ-KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 SFQ LDMRM S G +AS+V+N +DL RI GEE Q A AIV+ R+ Sbjct: 116 SFQGDDHDLDMRMDTSKGTTASEVLNTLREEDLGRIFREYGEEPQWKNAAKAIVQFRRHK 175 Query: 184 PFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 T +DL + + +IHP T FQALR++VN E +L L SA + L Sbjct: 176 KIITVRDLKEATTRVFPSYRLRKKIHPLTLIFQALRVYVNQEDVQLKVFLESAMRWLAPE 235 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G LI++SF S EDR VK FF V + +TKKVV+PT E+ Sbjct: 236 GRLIIISFCSSEDRPVKWFFREAEAMG--------------VGKILTKKVVMPTYEETRK 281 Query: 303 NRRSRSAKLRAGMR 316 N R RSAKLR + Sbjct: 282 NPRCRSAKLRCFEK 295 >gi|186701697|ref|ZP_02971391.1| S-adenosyl-methyltransferase MraW [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|186700956|gb|EDU19238.1| S-adenosyl-methyltransferase MraW [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 308 Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats. Identities = 104/310 (33%), Positives = 159/310 (51%), Gaps = 12/310 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI---ALDRDPFAVS 72 H+ VLL + I LLN P + +D TFG GG+S+ K S LD+D A++ Sbjct: 2 EFNQHITVLLNETIELLNIKPDGIYVDCTFGRGGHSQLILKKLSKKGKLICLDQDQEAIN 61 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK 129 ++ + + F L+ + VDG +FDLG+SS Q+D RGFS+ K Sbjct: 62 FANNLFKN-NTNVIVIKTNFKNLKSALGAHKIFYVDGFIFDLGLSSPQLDDPKRGFSYHK 120 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 + LDMRM S ++A +VN + L I GE K IA AIVK R TT Sbjct: 121 NAWLDMRMDQSQNLNAHYIVNNYSFAKLVSIFKRYGEIKYPKIIADAIVKERSIKEINTT 180 Query: 189 QDLSSLIQKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L +I+K + HPA FQA+RI VN+E+ L + A L G++ + Sbjct: 181 LELVEIIKKYSPKKNLFEKKHPARLFFQAIRIEVNDELNILEKAFNDAISMLNPLGVVAI 240 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +SFHSLED++VKK F + + + + +P N + + + +K ++P+ +++ N RSR Sbjct: 241 ISFHSLEDKIVKKVFNNYAK--IKLPKEVPINNYVNKYSLLNQK-IMPSTQELNDNNRSR 297 Query: 308 SAKLRAGMRT 317 S+ LR +R Sbjct: 298 SSILRGLIRN 307 >gi|332528826|ref|ZP_08404800.1| 16S rRNA m(4)C1402 methyltranserfase [Hylemonella gracilis ATCC 19624] gi|332041685|gb|EGI78037.1| 16S rRNA m(4)C1402 methyltranserfase [Hylemonella gracilis ATCC 19624] Length = 320 Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats. Identities = 120/320 (37%), Positives = 181/320 (56%), Gaps = 21/320 (6%) Query: 20 HVPVLLEKVIALLNPAP----------GKVILDATFGAGGYSRSFCKMGS---NVIALDR 66 H VLL + + L P +DATFG GG+SR + + A D+ Sbjct: 7 HTTVLLNEAVDALLNRPVELPDSLKTEDGHYVDATFGRGGHSRLLLSRLAPQARLTAFDK 66 Query: 67 DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126 DP AV+ Q+ ++ +FS+ F+ L + +P + GV+ DLG+SS QID RGFS Sbjct: 67 DPQAVAEAQKIVQS-DARFSIRHQGFAHL-NELPTQSCQGVLMDLGISSPQIDDPARGFS 124 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-AP 184 F+ GPLDMRM + G S ++ + A V+++ ++ GEE+ A IA AIV+RRQ+ P Sbjct: 125 FRAEGPLDMRMDPTRGRSVAEWLMSAEVREIAEVIRDYGEERFAGPIAKAIVERRQAGRP 184 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 TT +L+ L+ V + + +PATR+FQA RIF+N E+EEL L ++ L+ GG Sbjct: 185 LATTAELAQLVAGAVKTREPGQ-NPATRTFQAFRIFINAELEELQAALEASLDVLQTGGR 243 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 L+V+SFHSLEDR+VK+F A + +V R + P +++ + V P++ +VA N Sbjct: 244 LVVISFHSLEDRIVKQFIARHAREVY-DRRAPFAAPTPTRLRAVER--VRPSEAEVAANP 300 Query: 305 RSRSAKLRAGMRTVERSIED 324 R+RSA +R +RT E Sbjct: 301 RARSAIMRVAVRTDAEREEA 320 >gi|33593961|ref|NP_881605.1| S-adenosyl-methyltransferase MraW [Bordetella pertussis Tohama I] gi|33598269|ref|NP_885912.1| S-adenosyl-methyltransferase MraW [Bordetella parapertussis 12822] gi|33603180|ref|NP_890740.1| S-adenosyl-methyltransferase MraW [Bordetella bronchiseptica RB50] gi|42558972|sp|Q7VUP6|RSMH_BORPE RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|42558973|sp|Q7W4A7|RSMH_BORPA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|42558974|sp|Q7WFR5|RSMH_BORBR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|33564035|emb|CAE43301.1| S-adenosyl-methyltransferase [Bordetella pertussis Tohama I] gi|33566827|emb|CAE39042.1| S-adenosyl-methyltransferase [Bordetella parapertussis] gi|33568811|emb|CAE34569.1| S-adenosyl-methyltransferase [Bordetella bronchiseptica RB50] gi|332383379|gb|AEE68226.1| S-adenosyl-methyltransferase MraW [Bordetella pertussis CS] Length = 364 Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats. Identities = 119/331 (35%), Positives = 173/331 (52%), Gaps = 31/331 (9%) Query: 19 DHVPVLLEKVIALL---------------NPAPG-------KVILDATFGAGGYSRSFCK 56 +H PVLLE + L P P V +D TFG GG+SR+ Sbjct: 4 EHRPVLLEPTVDALVLPDFGGKGAHRQAGEPGPDAATRLQHGVFVDGTFGRGGHSRALLA 63 Query: 57 MGS---NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFD 110 ++ D+DP A++ +E + + + F+ + + + +G VDGV+ D Sbjct: 64 RLGAQARLVVFDKDPQAIAVARE-LAAGDGRVEVVHGGFATMAEELTARGIEQVDGVMLD 122 Query: 111 LGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQA 169 LGVSS QID +RGFSF + GPLDMRM + G + +D + QA+V ++ ++ GEE+ A Sbjct: 123 LGVSSPQIDDAERGFSFMRDGPLDMRMDTTRGPTVADWLAQASVDEMREVIADYGEERFA 182 Query: 170 SRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELA 229 ++A AI R + P TT L+ + V ++ HPATR+FQALRI++N E+EELA Sbjct: 183 FQVAKAIAACRATRPLHTTLQLAECVAGAV-RTREKGQHPATRTFQALRIYINRELEELA 241 Query: 230 QGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT 289 + L SA L GG L V+SFHSLEDR+VK+ A+ + A + + + Sbjct: 242 RALASALDLLGPGGRLAVISFHSLEDRMVKQCIAAAARPAAAHARLPLRESELPQPLVRS 301 Query: 290 KKVVVPTQEDVAFNRRSRSAKLRAGMRTVER 320 VV +VA N R+RSA LR RT E Sbjct: 302 LGKVVADDVEVAGNARARSAILRVAERTGEP 332 >gi|171462979|ref|YP_001797092.1| S-adenosyl-methyltransferase MraW [Polynucleobacter necessarius subsp. necessarius STIR1] gi|262824846|sp|B1XT01|RSMH_POLNS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|171192517|gb|ACB43478.1| S-adenosyl-methyltransferase MraW [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 316 Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats. Identities = 111/312 (35%), Positives = 186/312 (59%), Gaps = 21/312 (6%) Query: 20 HVPVLLEKVIALLNPAP--------GKV-ILDATFGAGGYSRSFCKMG---SNVIALDRD 67 H PVLL + + L P + ++D TFG GG++++ K +++I+ D+D Sbjct: 5 HRPVLLAEAVTALVGGPLIQNQNSENHILVIDGTFGRGGHTQALLKELNPSAHMISFDKD 64 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 A++ Q+ + + +F+Q+ Y + VDG++ DLG+SS Q+D RGFSF Sbjct: 65 LDAIAVAQKI---NDPRLKIVHDSFAQMDQYAEAESVDGILLDLGISSPQVDEAHRGFSF 121 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA-PF 185 ++ GPLDMRM+ G++A++ + QA+++++T ++ GEE+ A +IA AIV +R+ P Sbjct: 122 RREGPLDMRMNTDHGLTAAEWLEQASLEEITHVIKTYGEERFAFQIARAIVAKREDGLPP 181 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 +TT L+SL+ V ++ PATR+FQALRIF+N E+E+L GL++A K LK G L Sbjct: 182 KTTTQLASLVSSVV-RTREAGQDPATRTFQALRIFINRELEDLELGLKAAMKLLKPGARL 240 Query: 246 IVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 V+SFHSLEDR+VK+F + + V + + + + I++ + P+ +V+ N Sbjct: 241 AVISFHSLEDRIVKQFMQAHAKVDVPRGLPVREKDLPQSALKIISR--LKPSDAEVSENP 298 Query: 305 RSRSAKLRAGMR 316 R+RSA +R + Sbjct: 299 RARSAIMRVAEK 310 >gi|257458293|ref|ZP_05623442.1| S-adenosyl-methyltransferase MraW [Treponema vincentii ATCC 35580] gi|257444320|gb|EEV19414.1| S-adenosyl-methyltransferase MraW [Treponema vincentii ATCC 35580] Length = 315 Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats. Identities = 106/305 (34%), Positives = 157/305 (51%), Gaps = 8/305 (2%) Query: 20 HVPVLLEKVIALLNPA-PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQE 76 H PVLL++ + LL P P +++D T G GG+S +F VI +D DP + + Sbjct: 5 HTPVLLQECLQLLAPETPDPLLIDGTLGEGGHSEAFLNRFPQLKVIGIDADPAIQAKAKV 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV--DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + + + F D P ++FDLG+S RGFSF PLD Sbjct: 65 RLAPFGNRVRFFLGWSDDFFDQYPQDNPAPSLILFDLGISLFHYTESKRGFSFGADEPLD 124 Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MR++ ++A+D+VN + K L +L + EE+ + IA A+V R+ PF + LS Sbjct: 125 MRINPDESLTAADIVNTYSEKKLADVLYLYAEERFSRPIARAVVAEREKHPFTEARQLSE 184 Query: 194 LIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 + V ++ IHPAT++FQALRI VN+E++ L + L A L GG + V+SFHS Sbjct: 185 TVFHAVPARFRHGPIHPATKTFQALRIAVNSELDRLPRLLEKAFACLAEGGKMGVISFHS 244 Query: 253 LEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK FF + + I + +TKK V P+ E+ A N SRSA+L Sbjct: 245 LEDRIVKLFFRDLAKSCICPPEMPICTCGGMPRAALLTKKPVCPSAEETAANAPSRSARL 304 Query: 312 RAGMR 316 R + Sbjct: 305 RVIKK 309 >gi|332297592|ref|YP_004439514.1| Ribosomal RNA small subunit methyltransferase H [Treponema brennaborense DSM 12168] gi|332180695|gb|AEE16383.1| Ribosomal RNA small subunit methyltransferase H [Treponema brennaborense DSM 12168] Length = 330 Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats. Identities = 109/321 (33%), Positives = 174/321 (54%), Gaps = 12/321 (3%) Query: 20 HVPVLLEKVIALLNP-----APGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVS 72 H PVLL++ + L+P ++D+T G GG+S +F S++ I LD DP + Sbjct: 5 HTPVLLQECLDALSPVGEPFEREPFMIDSTLGEGGHSEAFLTKYSDLRIIGLDADPNIQA 64 Query: 73 CGQETMRDYKEQFSLFQATFSQL-QDYVPDK-GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E + + + + F+ +Y D D ++FDLG+S + RGFSF++ Sbjct: 65 RAKERLAPFGSRMNFHLGWFNDFYANYPGDMPKPDLILFDLGISLFHYEKSGRGFSFRQD 124 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMR++ G SA D+VN + L I I GEE+ + RIA AI + R + +T Sbjct: 125 EPLDMRLNPDAGPSAGDLVNSLSSAQLADIFYIYGEERYSRRIAAAIERERAQSKIETAA 184 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ ++ ++V + ++ IHPAT++FQALRI VN E+ L + L +A LK GG + V+ Sbjct: 185 ALADIVYRSVPAAYRHGAIHPATKTFQALRIAVNRELNRLPEALPAAFNVLKCGGKMGVI 244 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +FHSLEDR+VK +F + S + I + +T+K + P+ +VA N SR Sbjct: 245 TFHSLEDRIVKNYFRNLSKVCICPPEQPICICGGVPHAELLTRKPLGPSGAEVAVNSPSR 304 Query: 308 SAKLRAGMRTVERSIEDDSFV 328 SAKLR + + S + + + Sbjct: 305 SAKLRVIRKLRDISAQSAALI 325 >gi|183508652|ref|ZP_02958151.1| S-adenosyl-methyltransferase MraW [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|182676119|gb|EDT88024.1| S-adenosyl-methyltransferase MraW [Ureaplasma parvum serovar 14 str. ATCC 33697] Length = 308 Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats. Identities = 104/310 (33%), Positives = 159/310 (51%), Gaps = 12/310 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI---ALDRDPFAVS 72 H+ VLL + I LLN P + +D TFG GG+S+ K S LD+D A++ Sbjct: 2 EFNQHITVLLNETIELLNIKPDGIYVDCTFGRGGHSQLILKKLSKKGKLICLDQDQEAIN 61 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK 129 ++ + + F L+ + VDG +FDLG+SS Q+D RGFS+ K Sbjct: 62 FANNLFKN-NTNVIVIKTNFKNLKSALSAHKIFYVDGFIFDLGLSSPQLDDPKRGFSYHK 120 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 + LDMRM S ++A +VN + L I GE K IA AIVK R TT Sbjct: 121 NAWLDMRMDQSQNLNAHYIVNNYSFVKLVSIFKRYGEIKYPKIIADAIVKERSIKEINTT 180 Query: 189 QDLSSLIQKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L +I+K + HPA FQA+RI VN+E+ L + A L G++ + Sbjct: 181 LELVEIIKKYSPKKNLFEKKHPARLFFQAIRIEVNDELNILEKAFNDAISMLNPLGVVAI 240 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +SFHSLED++VKK F + + + + +P N + + + +K ++P+ +++ N RSR Sbjct: 241 ISFHSLEDKIVKKVFNNYAK--IKLPKEVPINNYVNKYSLLNQK-IMPSTQELNDNNRSR 297 Query: 308 SAKLRAGMRT 317 S+ LR +R Sbjct: 298 SSILRGLIRN 307 >gi|13357947|ref|NP_078221.1| hypothetical protein UU386 [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170762354|ref|YP_001752469.1| S-adenosyl-methyltransferase MraW [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|20139253|sp|Q9PQA4|RSMH_UREPA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263504475|sp|B1AJ25|RSMH_UREP2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|11278383|pir||D82897 conserved hypothetical UU386 [imported] - Ureaplasma urealyticum gi|6899371|gb|AAF30796.1|AE002136_3 conserved hypothetical [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827931|gb|ACA33193.1| S-adenosyl-methyltransferase MraW [Ureaplasma parvum serovar 3 str. ATCC 27815] Length = 308 Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats. Identities = 104/310 (33%), Positives = 159/310 (51%), Gaps = 12/310 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI---ALDRDPFAVS 72 H+ VLL + I LLN P + +D TFG GG+S+ K S LD+D A++ Sbjct: 2 EFNQHITVLLNETIELLNIKPDGIYVDCTFGRGGHSQLILKKLSKKGKLICLDQDQEAIN 61 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK 129 ++ + + F L+ + VDG +FDLG+SS Q+D RGFS+ K Sbjct: 62 FANNLFKN-NTNVIVIKTNFKNLKSALSAHKIFYVDGFIFDLGLSSPQLDDPKRGFSYHK 120 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 + LDMRM S ++A +VN + L I GE K IA AIVK R TT Sbjct: 121 NAWLDMRMDQSQNLNAHYIVNNYSFAKLVSIFKRYGEIKYPKIIADAIVKERSIKEINTT 180 Query: 189 QDLSSLIQKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L +I+K + HPA FQA+RI VN+E+ L + A L G++ + Sbjct: 181 LELVEIIKKYSPKKNLFEKKHPARLFFQAIRIEVNDELNILEKAFNDAISMLNPLGVVAI 240 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +SFHSLED++VKK F + + + + +P N + + + +K ++P+ +++ N RSR Sbjct: 241 ISFHSLEDKIVKKVFNNYAK--IKLPKEVPINNYVNKYSLLNQK-IMPSTQELNDNNRSR 297 Query: 308 SAKLRAGMRT 317 S+ LR +R Sbjct: 298 SSILRGLIRN 307 >gi|297569458|ref|YP_003690802.1| S-adenosyl-methyltransferase MraW [Desulfurivibrio alkaliphilus AHT2] gi|296925373|gb|ADH86183.1| S-adenosyl-methyltransferase MraW [Desulfurivibrio alkaliphilus AHT2] Length = 303 Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats. Identities = 106/316 (33%), Positives = 162/316 (51%), Gaps = 31/316 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H PV+ +V+ L PA G + +D G GG++ + + +I D D A++ + Sbjct: 5 HQPVMPAEVLFWLAPAAGGIYVDGNLGLGGHAAAILEQSGPSGRLIGFDWDQEALARARS 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC------GDRGFSF 127 + + ++ L F +L+ + + + DG++ DLG+SS+Q+D RGFSF Sbjct: 65 NLARFGDRVHLQPCNFIELEATLAELAISRIDGILLDLGLSSLQLDSSGEAAGAGRGFSF 124 Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 ++ PLDMRM ++A+D++ + +L I GEE+QA RIA +VK+RQ P Sbjct: 125 RRPEPLDMRMDRRQELTAADLLRDLSAAELADIFYYYGEERQARRIAGWLVKQRQQTPIV 184 Query: 187 TTQDLSSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT L+ L+ V + R IH ATR FQALRI VN E+E L + L A L Sbjct: 185 TTVQLAELVAAAVPRRFHPRNIHVATRVFQALRIAVNRELENLEKILAVAPSFLSPKARF 244 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 +V+SFHSLEDRLVK+ F + +T + + P + ++ N R Sbjct: 245 VVISFHSLEDRLVKRAFRED-----------------PRLKILTTRPLQPQEAELQRNPR 287 Query: 306 SRSAKLRAGMRTVERS 321 +RSAKLR R E + Sbjct: 288 ARSAKLRVAERREETA 303 >gi|148269200|ref|YP_001243660.1| S-adenosyl-methyltransferase MraW [Thermotoga petrophila RKU-1] gi|281411498|ref|YP_003345577.1| S-adenosyl-methyltransferase MraW [Thermotoga naphthophila RKU-10] gi|262825857|sp|A5IIR1|RSMH_THEP1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|147734744|gb|ABQ46084.1| S-adenosyl-methyltransferase MraW [Thermotoga petrophila RKU-1] gi|281372601|gb|ADA66163.1| S-adenosyl-methyltransferase MraW [Thermotoga naphthophila RKU-10] Length = 299 Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats. Identities = 112/308 (36%), Positives = 179/308 (58%), Gaps = 29/308 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77 H+PV++ +VI L P K+ILD T G GG+S++ + G +I +D D + +E Sbjct: 8 HIPVMVREVIEFLKPEDEKIILDCTVGEGGHSKAILEHCPGCRIIGIDVDSEVLRIAEEK 67 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++++ ++ SLF+ ++ + + GV DG++ DLGVS+ Q+ +RGF+F++ PLD Sbjct: 68 LKEFSDRASLFKISYREADFLLKTLGVEKVDGILMDLGVSTYQLKGENRGFTFEREEPLD 127 Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEK-QASRIAHAIVKRRQSAPFQTTQDLS 192 MRM S ++A V+N+ ++L RI+ GEEK A RIA IV+ R P TT DL Sbjct: 128 MRMDLESEVTAQKVLNELPEEELARIIFEYGEEKKFARRIARKIVENR---PLNTTLDLV 184 Query: 193 SLIQKTVYFS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +++ + + + H AT++FQA+RI+VN E+E L + LR AE L GG ++V+SF Sbjct: 185 KAVREALPSYEIRRRKRHFATKTFQAIRIYVNRELENLKEFLRKAEDLLNPGGRIVVISF 244 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDR+VK+ F + + +T+K V P++E++ N R+RS + Sbjct: 245 HSLEDRIVKETFRNSKK-----------------LRILTEKPVRPSEEEIRENPRARSGR 287 Query: 311 LRAGMRTV 318 LRA R Sbjct: 288 LRAAERIE 295 >gi|94970665|ref|YP_592713.1| S-adenosyl-methyltransferase MraW [Candidatus Koribacter versatilis Ellin345] gi|263433351|sp|Q1IKG1|RSMH_ACIBL RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|94552715|gb|ABF42639.1| methyltransferase [Candidatus Koribacter versatilis Ellin345] Length = 313 Score = 326 bits (837), Expect = 2e-87, Method: Composition-based stats. Identities = 120/310 (38%), Positives = 174/310 (56%), Gaps = 30/310 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 HV VL ++ I L G LDAT G GG+S K ++IALD+D A+ + Sbjct: 20 HVSVLSQEAIDFLAIRRGGTYLDATLGLGGHSYEIAKRLGAQGHLIALDKDTNALEMARR 79 Query: 77 TMRDYKE-------QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 + + Q +L A+F++++ ++ K +DGV+ DLG+SSMQ+ RGFSFQ Sbjct: 80 RLEQVPDDLKEDWPQITLLHASFAEMKQHIASKSLDGVLADLGISSMQLQDAGRGFSFQA 139 Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM+ G ++A VVN + ++L ++ GEE+++ RIA AI + R P +TT Sbjct: 140 EGPLDMRMNPHGDLTAEQVVNHTSERELADVIYEFGEERRSRRIARAICRAR---PIRTT 196 Query: 189 QDLSSLIQKTVYF--SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 L+ +I RIHPAT++FQALRIFVN+E+++L + L S L G L+ Sbjct: 197 AHLAQVISVAARPMNQAERRIHPATKTFQALRIFVNHELDDLKELLASVPSRLVPRGRLV 256 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V+SFHSLEDR+VK + ++ +TKK V T+E++ N RS Sbjct: 257 VISFHSLEDRIVKDSLRDGASAG--------------KYELLTKKPVTATEEEIDRNPRS 302 Query: 307 RSAKLRAGMR 316 RSAKLRA R Sbjct: 303 RSAKLRAAAR 312 >gi|228469401|ref|ZP_04054415.1| S-adenosyl-methyltransferase MraW [Porphyromonas uenonis 60-3] gi|228309085|gb|EEK17715.1| S-adenosyl-methyltransferase MraW [Porphyromonas uenonis 60-3] Length = 310 Score = 326 bits (837), Expect = 2e-87, Method: Composition-based stats. Identities = 106/316 (33%), Positives = 163/316 (51%), Gaps = 20/316 (6%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 MS+ ++HT VL E + LL P + +D T G GG+SR+ + I LD Sbjct: 1 MSTKLYHTA-----VLCEDSLNLLVTTPSGLYVDVTMGGGGHSRALLERLSPEGRCIGLD 55 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCG 121 +DP A++ + ++ F L ++ G VDG++ DLGVSS D Sbjct: 56 QDPDAMANAPQ-----DSRYHFVATNFRYLGQWLDYWGLAGEVDGILADLGVSSHHFDSE 110 Query: 122 DRGFSFQKSGPL-DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFSF+ + DMRM+ SG++A D++ + + L IL GE A RIA +V Sbjct: 111 ERGFSFRYEEAMPDMRMNSRSGVTARDLLLSYSEEQLADILYYYGELHDARRIAALLVSH 170 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 R + T L ++ + + +R FQALRI VN+E+ L Q L + + L Sbjct: 171 RAVG-YPTIASLMEVLAPVLPKGGPQLRNKLSRIFQALRIEVNDELGALRQLLSDSVRLL 229 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 K GG + ++S+HSLEDR+VK+FF S + + + PA + +TKK + P+ ++ Sbjct: 230 KPGGRIAIISYHSLEDRMVKEFFRLGSFEQPSEALAGMPLSKPAPLRVVTKKAITPSADE 289 Query: 300 VAFNRRSRSAKLRAGM 315 +A N R+RSAKLR Sbjct: 290 IADNNRARSAKLRVAE 305 >gi|261337512|ref|ZP_05965396.1| S-adenosyl-methyltransferase MraW [Bifidobacterium gallicum DSM 20093] gi|270277911|gb|EFA23765.1| S-adenosyl-methyltransferase MraW [Bifidobacterium gallicum DSM 20093] Length = 356 Score = 326 bits (837), Expect = 2e-87, Method: Composition-based stats. Identities = 107/314 (34%), Positives = 157/314 (50%), Gaps = 11/314 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSN--VIALDRD 67 + H H PVLLE+ + L+ PA PG V++D T G G++ +F K N ++ +DRD Sbjct: 1 MDHITQIHQPVLLEQCVDLVVPALNAPGSVVVDCTLGLAGHATAFLKAAPNATLLGIDRD 60 Query: 68 PFAVSCGQETMRDYK--EQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGD 122 A++ + M ++F A F V G V V DLG+SS+QID + Sbjct: 61 AEALALATQRMEHEGLADRFIAVHAAFDDFGQAVDAHGLGPVQAVFMDLGLSSLQIDETE 120 Query: 123 RGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFS+ PLDMRM + ++A ++ + L RI GEE+ A +IA IV R Sbjct: 121 RGFSYSHDAPLDMRMDTTQPLTAQTILATYDEASLARIFKDYGEERFARQIARRIVSTRN 180 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 P T+ L+ L+ + + +PA R FQALRI VN E+++L + L L Sbjct: 181 REPLTTSAQLNRLVDAVIPQAHRASGNPAKRVFQALRIEVNGELDKLRRTLPQIANRLAV 240 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 GG L+V S+HSLEDR VK F + + + F ++TK + E++ Sbjct: 241 GGRLVVESYHSLEDRTVKTFMQQGLSIDVPADMPVIPDDAQPFFSALTKGALKADAEEIE 300 Query: 302 FNRRSRSAKLRAGM 315 N RS S +LRA Sbjct: 301 HNPRSASVRLRAVE 314 >gi|307720766|ref|YP_003891906.1| S-adenosyl-methyltransferase MraW [Sulfurimonas autotrophica DSM 16294] gi|306978859|gb|ADN08894.1| S-adenosyl-methyltransferase MraW [Sulfurimonas autotrophica DSM 16294] Length = 308 Score = 326 bits (837), Expect = 3e-87, Method: Composition-based stats. Identities = 103/303 (33%), Positives = 173/303 (57%), Gaps = 15/303 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76 H+PVL ++VI +++D T G GG+S + N +IA+D+D A+ + Sbjct: 5 PHIPVLYKEVIEAFKDLKEGIVIDCTMGYGGHSSLLLEANQNIKLIAIDQDQTAIDFSSK 64 Query: 77 TMRDYKEQFSLFQATFSQ-LQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + Y E+ S+ + FS +++ + + + G++ D+GVSS+Q+D +RGFS++ Sbjct: 65 RLEKYGERVSIRKGRFSAVIKEILQEVNPNEIKGILADIGVSSLQLDQKERGFSYESDN- 123 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM ++AS+VVN+ + +L RIL GE + +IA IV+ R PF + ++L Sbjct: 124 LDMRMDKDAQLNASNVVNEYSKTELERILLEYGELRNYKKIADVIVQNR---PFVSAKEL 180 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 S ++ + S+ +IHPAT QA+RI VN+E+ EL L+S E+A + ++SFH Sbjct: 181 SEAVRP--HMSRGKKIHPATLLMQAIRIEVNDELGELKSLLQSIEEAKLPEAKVAIISFH 238 Query: 252 SLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VKK F+ S + + + + +TKK ++ ++++ N RSRSA Sbjct: 239 SLEDRIVKKEFSKWSKSCICPPEAFRCSCGNNHQLGKILTKKPIMAQEDELKENVRSRSA 298 Query: 310 KLR 312 K+R Sbjct: 299 KMR 301 >gi|254459393|ref|ZP_05072814.1| S-adenosyl-methyltransferase MraW [Campylobacterales bacterium GD 1] gi|207084006|gb|EDZ61297.1| S-adenosyl-methyltransferase MraW [Campylobacterales bacterium GD 1] Length = 307 Score = 326 bits (836), Expect = 3e-87, Method: Composition-based stats. Identities = 103/305 (33%), Positives = 168/305 (55%), Gaps = 15/305 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76 H+PVL +V+ +I+D T G GG+S + N +IA+D+D A+ + Sbjct: 5 PHIPVLYREVVDTFKDIKNGIIIDCTMGYGGHSSMILESNPNIELIAIDQDQTAIDFSTK 64 Query: 77 TMRDYKEQFSLFQATFSQ-LQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + ++ ++ S+ + FS ++D + + GVD GV+ D+GVSS+Q+D DRGFS++ Sbjct: 65 RLEEFGDRVSIRKGRFSSVIKDIIAEYGVDKIRGVLADIGVSSLQLDQKDRGFSYESEN- 123 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM +SA +VVN+ + +L IL GE + +IA AIV R PF + ++L Sbjct: 124 LDMRMDKDAPLSAKNVVNEYSNSELENILLEYGELRNYKKIASAIVNSR---PFTSAKEL 180 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 S + + K +IHPAT QA+RI VN+E+ EL L+S E + + V+SFH Sbjct: 181 SERTKHLMPHGK--KIHPATLLMQAIRIEVNDELGELKSLLQSIEDSQFTDATVAVISFH 238 Query: 252 SLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK+ + + + + ++ + ++KK + +++ N RSRSA Sbjct: 239 SLEDRIVKQTYTKWTKNCICPDEAMRCTCSRDNSLGRILSKKPITAQDDELKENPRSRSA 298 Query: 310 KLRAG 314 K+R Sbjct: 299 KMRVF 303 >gi|320093982|ref|ZP_08025809.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Actinomyces sp. oral taxon 178 str. F0338] gi|319979088|gb|EFW10604.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Actinomyces sp. oral taxon 178 str. F0338] Length = 355 Score = 326 bits (836), Expect = 4e-87, Method: Composition-based stats. Identities = 106/307 (34%), Positives = 168/307 (54%), Gaps = 11/307 (3%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCG 74 H PVLL++ + +L PA PG V++DAT G GG++ + + I +DRDP AV+ Sbjct: 40 HTPVLLDECLDMLAPAIEGPGSVLIDATLGMGGHTEGALRRFPGLVVIGIDRDPEAVALA 99 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + + +F +AT+ + V D DGV+ DLGVSS+Q+D +RGFS+ + Sbjct: 100 SKRLEGFGPRFLAVRATYDSIGQVVADHAPRGEADGVLMDLGVSSLQLDDAERGFSYSQD 159 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM + G+SA++++ A +++TRIL GEE+ A RIA +V RR + P T Sbjct: 160 APLDMRMDPTRGVSAAELLATAPQEEITRILRAYGEERFAPRIARLVVARRGAQPLTRTG 219 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L ++++ + ++ +PA R+FQALR+ VN+E+ L + L +A +L+ GG L+V Sbjct: 220 QLVDIVREAIPAPARRTGGNPAKRTFQALRVAVNDELAILERALPAALASLRVGGRLVVE 279 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 S+ SLEDR+VK S + + +T+ + N RS S Sbjct: 280 SYQSLEDRIVKNVLRGGSTVSAPPGLPVVPDEARPRLALLTRGAGRAPASEQEKNPRSAS 339 Query: 309 AKLRAGM 315 +LR Sbjct: 340 VRLRGAE 346 >gi|162449928|ref|YP_001612295.1| methyltransferase [Sorangium cellulosum 'So ce 56'] gi|262826606|sp|A9FI25|RSMH_SORC5 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|161160510|emb|CAN91815.1| methyltransferase [Sorangium cellulosum 'So ce 56'] Length = 315 Score = 326 bits (836), Expect = 4e-87, Method: Composition-based stats. Identities = 111/303 (36%), Positives = 175/303 (57%), Gaps = 22/303 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETM 78 HV VL +V+A L+P V +DAT GAGG++ + + G+ VI +DRD A++ + + Sbjct: 23 HVSVLGREVLAALSPVSEGVYVDATLGAGGHTATILETPGARVIGIDRDERALAIARARL 82 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 ++ + FS+++ ++ GV DG++ D+GVSSMQ+D RG SF+ GPLDM Sbjct: 83 ARAGDRVTYVHGEFSEIERHLAALGVPQVDGLLADIGVSSMQLDDPGRGMSFRAEGPLDM 142 Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM S G +A +++ + + ++L ++ GEE+++ R+A I + S TT DL Sbjct: 143 RMDSSRGETALELIERLSDEELADLIYRYGEERRSRRVARCIKQAADSGELVTTLDLRRA 202 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 + + V ++ + PATR+FQALRI VN E+++L L +A + + GG+L V+SFHSLE Sbjct: 203 VVRAVGPARIGGVDPATRTFQALRIAVNGELDQLEALLEAAPRIIAPGGVLAVISFHSLE 262 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 DR+VK+ P V++ +TKK V ++V N R+RSAKLRA Sbjct: 263 DRIVKRALRE-----------------PEVWEPLTKKPVTAGDDEVEGNPRARSAKLRAA 305 Query: 315 MRT 317 R Sbjct: 306 RRV 308 >gi|8134827|sp|O69560|RSMH_MYCLE RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263460319|sp|B8ZQP2|RSMH_MYCLB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|3080481|emb|CAA18676.1| hypothetical protein MLCB268.10c [Mycobacterium leprae] Length = 340 Score = 326 bits (836), Expect = 4e-87, Method: Composition-based stats. Identities = 117/321 (36%), Positives = 174/321 (54%), Gaps = 18/321 (5%) Query: 15 HTIGDHVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKMGS--NVIAL 64 ++ HVPV ++ + LL PA +++DAT G GG++ F +I L Sbjct: 5 SSVFGHVPVFAQRCVTLLAPALTRHHADGSNAILVDATLGVGGHAERFLTEFPGLRLIGL 64 Query: 65 DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSSMQI 118 DRDP A+ + + + ++ +L + L + G VDGV+FDLGVSSMQ+ Sbjct: 65 DRDPSALDIARTRLMRFADRVTLIHTRYDNLAVALNKFGYAAVESVDGVLFDLGVSSMQL 124 Query: 119 DCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177 DC +RGFS+ + PLDMRM S +SA+D+VN + L IL GEE+ A RIA IV Sbjct: 125 DCAERGFSYAQDVPLDMRMDPWSPVSAADIVNNYDEAALADILRRYGEERFARRIAAHIV 184 Query: 178 KRRQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236 +RR PF +T +L +L+ + + ++ HPA R+FQALRI VN+E+ L+ L +A Sbjct: 185 RRRAHTPFTSTAELVALLYQAIPAPARRIGGHPAKRTFQALRIAVNDELNSLSNVLPAAL 244 Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296 AL G L+V+++ SLEDR+VK+ FA I H F+ +T+ Sbjct: 245 DALTVAGRLVVLAYQSLEDRIVKRVFADAVSSRTPAGLPIELPGHGPRFRLLTRGAEHAD 304 Query: 297 QEDVAFNRRSRSAKLRAGMRT 317 ++ N RS + +LRA RT Sbjct: 305 AAEIECNPRSAAVRLRALQRT 325 >gi|332299370|ref|YP_004441291.1| Ribosomal RNA small subunit methyltransferase H [Porphyromonas asaccharolytica DSM 20707] gi|332176433|gb|AEE12123.1| Ribosomal RNA small subunit methyltransferase H [Porphyromonas asaccharolytica DSM 20707] Length = 338 Score = 325 bits (835), Expect = 4e-87, Method: Composition-based stats. Identities = 104/306 (33%), Positives = 155/306 (50%), Gaps = 15/306 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H VL E + LL P + +D T G GG+SR+ + I LD+DP AV Sbjct: 35 HTAVLCEDSLDLLVTTPTGLYVDVTMGGGGHSRALLERLAPEGRCIGLDQDPDAVVNA-- 92 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 ++ F L ++ G VDG++ DLGVSS D +RGFSF+ Sbjct: 93 ---PTDSRYHFVATNFRYLGQWLDYWGLTGQVDGILADLGVSSHHFDSEERGFSFRYEEA 149 Query: 133 L-DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 + DMRM+ SG++A D++ + + L IL GE A RIA +V R + T Sbjct: 150 MPDMRMNSRSGVTARDILLSYSEEQLADILYYYGELHDARRIAALLVSHRAVG-YPTIAA 208 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L ++ + + +R FQALRI VN+E+ L Q L + + LK GG + ++S+ Sbjct: 209 LMEVLTPVLPKGGPQLRNKLSRIFQALRIEVNDELGALRQLLSDSVRLLKPGGRIAIISY 268 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDR+VK+FF + + + PA + +TKK + P+ +++A N R+RSAK Sbjct: 269 HSLEDRMVKEFFRLGCFEQPSEALAGMPLSAPAPLRVVTKKAITPSADEIADNNRARSAK 328 Query: 311 LRAGMR 316 LR R Sbjct: 329 LRVAER 334 >gi|313886065|ref|ZP_07819803.1| S-adenosyl-methyltransferase MraW [Porphyromonas asaccharolytica PR426713P-I] gi|312924595|gb|EFR35366.1| S-adenosyl-methyltransferase MraW [Porphyromonas asaccharolytica PR426713P-I] Length = 310 Score = 325 bits (835), Expect = 4e-87, Method: Composition-based stats. Identities = 107/317 (33%), Positives = 161/317 (50%), Gaps = 20/317 (6%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 MS+ ++HT VL E + LL P + +D T G GG+SR+ + I LD Sbjct: 1 MSAKLYHTA-----VLCEDSLDLLVTTPTGLYVDVTMGGGGHSRALLERLAPEGRCIGLD 55 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCG 121 +DP AV ++ F L ++ G VDG++ DLGVSS D Sbjct: 56 QDPDAVVNA-----PTDSRYHFVATNFRYLGQWLDYWGLTGQVDGILADLGVSSHHFDSE 110 Query: 122 DRGFSFQKSGPL-DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFSF+ + DMRM+ SG++A D++ + + L IL GE A RIA +V Sbjct: 111 ERGFSFRYEEAMPDMRMNSRSGVTARDILLSYSEEQLADILYYYGELHDARRIAALLVSH 170 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 R + T L ++ + + +R FQALRI VN+E+ L Q L + + L Sbjct: 171 RAVG-YPTIAALMEVLTPVLPKGGPQLRNKLSRIFQALRIEVNDELGALRQLLSDSVRLL 229 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 K GG + ++S+HSLEDR+VK+FF + + + PA + +TKK + P+ ++ Sbjct: 230 KPGGRIAIISYHSLEDRMVKEFFRLGCFEQPSEALAGMPLSAPAPLRVVTKKAITPSADE 289 Query: 300 VAFNRRSRSAKLRAGMR 316 +A N R+RSAKLR R Sbjct: 290 IADNNRARSAKLRVAER 306 >gi|167966821|ref|ZP_02549098.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis H37Ra] gi|215411891|ref|ZP_03420665.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis 94_M4241A] gi|215427543|ref|ZP_03425462.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis T92] gi|215446396|ref|ZP_03433148.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis T85] Length = 331 Score = 325 bits (835), Expect = 4e-87, Method: Composition-based stats. Identities = 115/318 (36%), Positives = 173/318 (54%), Gaps = 18/318 (5%) Query: 22 PVLLEKVIALLNPA-----PGK---VILDATFGAGGYSRSFCKMGS--NVIALDRDPFAV 71 PVL ++ LL PA P V+LDAT GAGG++ F + +I LDRDP A+ Sbjct: 2 PVLAQRCFELLTPALTRYYPDGSQAVLLDATIGAGGHAERFLEGLPGLRLIGLDRDPTAL 61 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSSMQIDCGDRGF 125 + + + ++ +L + L + + G VDG++FDLGVSSMQ+D +RGF Sbjct: 62 DVARSRLVRFADRLTLVHTRYDCLGAALAESGYAAVGSVDGILFDLGVSSMQLDRAERGF 121 Query: 126 SFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 ++ PLDMRM + ++A+D+VN + L IL GEE+ A RIA IV+RR P Sbjct: 122 AYATDAPLDMRMDPTTPLTAADIVNTYDEAALADILRRYGEERFARRIAAGIVRRRAKTP 181 Query: 185 FQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 F +T +L +L+ + + ++ HPA R+FQALRI VN+E+E L + +A AL GG Sbjct: 182 FTSTAELVALLYQAIPAPARRVGGHPAKRTFQALRIAVNDELESLRTAVPAALDALAIGG 241 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 + V+++ SLEDR+VK+ FA + H F+S+T + ++ N Sbjct: 242 RIAVLAYQSLEDRIVKRVFAEAVASATPAGLPVELPGHEPRFRSLTHGAERASVAEIERN 301 Query: 304 RRSRSAKLRAGMRTVERS 321 RS +LRA R R+ Sbjct: 302 PRSTPVRLRALQRVEHRA 319 >gi|254774999|ref|ZP_05216515.1| S-adenosyl-methyltransferase MraW [Mycobacterium avium subsp. avium ATCC 25291] Length = 334 Score = 325 bits (835), Expect = 4e-87, Method: Composition-based stats. Identities = 121/319 (37%), Positives = 180/319 (56%), Gaps = 18/319 (5%) Query: 20 HVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69 HVPVLLE+ + LL PA G V+LDAT GAGG++ F +IALDRDP Sbjct: 10 HVPVLLERCVELLTPALTRRHPDGSGAVLLDATLGAGGHAERFLTDLPGLRLIALDRDPS 69 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSSMQIDCGDR 123 A+ +E + + ++ +L + + + + G VDG++FDLGVSSMQ+D +R Sbjct: 70 ALEIARERLARFADRITLVHTRYDGIAAALTESGYAATESVDGILFDLGVSSMQLDRPER 129 Query: 124 GFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GF++ + PLDMRM S ++A+D++N + +L IL GEE+ A RIA IV+RR Sbjct: 130 GFAYAQDAPLDMRMDPGSPLTAADILNTYDEAELADILHRYGEERFARRIAAQIVRRRAK 189 Query: 183 APFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 PF +T DL SL+ + + ++ HPA R+FQALRI VN+E++ L L +A AL Sbjct: 190 EPFTSTADLVSLLYQAIPAPARRTGGHPAKRTFQALRIAVNDELDTLRCALPAALDALAV 249 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 G ++V+++ SLEDR+VK+ FA V + H F+++T ++ Sbjct: 250 DGRIVVLAYQSLEDRIVKRLFAQAVASRTPVDLPVELPGHEPRFRALTHGAGRADAAEIE 309 Query: 302 FNRRSRSAKLRAGMRTVER 320 N RS + +LRA RT Sbjct: 310 RNPRSAAVRLRALQRTQAP 328 >gi|171742509|ref|ZP_02918316.1| hypothetical protein BIFDEN_01621 [Bifidobacterium dentium ATCC 27678] gi|283456404|ref|YP_003360968.1| mraW S-adenosyl-methyltransferase mraW [Bifidobacterium dentium Bd1] gi|306822422|ref|ZP_07455800.1| S-adenosyl-methyltransferase MraW [Bifidobacterium dentium ATCC 27679] gi|309802480|ref|ZP_07696586.1| S-adenosyl-methyltransferase MraW [Bifidobacterium dentium JCVIHMP022] gi|171278123|gb|EDT45784.1| hypothetical protein BIFDEN_01621 [Bifidobacterium dentium ATCC 27678] gi|283103038|gb|ADB10144.1| mraW S-adenosyl-methyltransferase mraW [Bifidobacterium dentium Bd1] gi|304553967|gb|EFM41876.1| S-adenosyl-methyltransferase MraW [Bifidobacterium dentium ATCC 27679] gi|308220880|gb|EFO77186.1| S-adenosyl-methyltransferase MraW [Bifidobacterium dentium JCVIHMP022] Length = 343 Score = 325 bits (835), Expect = 4e-87, Method: Composition-based stats. Identities = 109/307 (35%), Positives = 161/307 (52%), Gaps = 11/307 (3%) Query: 20 HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 H PVLL + + L+ P PG V +D T G G+S +F K +I +DRD A++ Sbjct: 8 HQPVLLRECVDLVAPALAKPGAVAVDCTLGLAGHSTAFLKASPEARLIGIDRDVEALALA 67 Query: 75 QETMRDYK--EQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK 129 M E+F A F + + D+ VD V DLG+SS+QID +RGFS+ Sbjct: 68 TRRMEQEGLAERFIPVHAAFDEFAHVLEDRNIDVVDAVFMDLGLSSLQIDETERGFSYSH 127 Query: 130 SGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM ++A V+++ + DL RI GEE+ + +IA IV+RR++ P T+ Sbjct: 128 DAPLDMRMDVTQPLTARQVLSEYSFADLVRIFRTYGEERFSKQIAREIVRRRETEPLTTS 187 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ L+ + V + +PA R FQALRI VN E+++LA L L GG L+V Sbjct: 188 GQLNRLVDEVVPQAHRPAGNPAKRVFQALRIEVNGELDKLAGTLPQIANHLAVGGRLVVE 247 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 S+HSLED+ VK F A + + F+ +T+ + + ++A N RS S Sbjct: 248 SYHSLEDKTVKTFMAQGLKADVPADMPVIPPDMQPFFKELTRGAIKADETEIAMNPRSAS 307 Query: 309 AKLRAGM 315 +LRA Sbjct: 308 VRLRAVE 314 >gi|118464814|ref|YP_881532.1| S-adenosyl-methyltransferase MraW [Mycobacterium avium 104] gi|263456513|sp|A0QF44|RSMH_MYCA1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|118166101|gb|ABK66998.1| S-adenosyl-methyltransferase MraW [Mycobacterium avium 104] Length = 335 Score = 325 bits (835), Expect = 4e-87, Method: Composition-based stats. Identities = 121/319 (37%), Positives = 180/319 (56%), Gaps = 18/319 (5%) Query: 20 HVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69 HVPVLLE+ + LL PA G V+LDAT GAGG++ F +IALDRDP Sbjct: 10 HVPVLLERCVELLTPALTRRHPDGSGAVLLDATLGAGGHAERFLTDLPGLRLIALDRDPS 69 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSSMQIDCGDR 123 A+ +E + + ++ +L + + + + G VDG++FDLGVSSMQ+D +R Sbjct: 70 ALEIARERLARFADRITLVHTRYDGIAAALTESGYAATESVDGILFDLGVSSMQLDRPER 129 Query: 124 GFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GF++ + PLDMRM S ++A+D++N + +L IL GEE+ A RIA IV+RR Sbjct: 130 GFAYAQDAPLDMRMDPGSPLTAADILNTYDEAELADILHRYGEERFARRIAAQIVRRRAK 189 Query: 183 APFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 PF +T DL SL+ + + ++ HPA R+FQALRI VN+E++ L L +A AL Sbjct: 190 EPFTSTADLVSLLYQAIPAPARRTGGHPAKRTFQALRIAVNDELDTLRCALPAALDALAV 249 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 G ++V+++ SLEDR+VK+ FA V + H F+++T ++ Sbjct: 250 DGRIVVLAYQSLEDRIVKRLFAQAVASRTPVDLPVELPGHEPRFRALTHGAGRADAAEIE 309 Query: 302 FNRRSRSAKLRAGMRTVER 320 N RS + +LRA RT Sbjct: 310 RNPRSAAVRLRALQRTQAP 328 >gi|225351427|ref|ZP_03742450.1| hypothetical protein BIFPSEUDO_03022 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157771|gb|EEG71054.1| hypothetical protein BIFPSEUDO_03022 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 343 Score = 325 bits (835), Expect = 4e-87, Method: Composition-based stats. Identities = 108/307 (35%), Positives = 160/307 (52%), Gaps = 11/307 (3%) Query: 20 HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 H PVLL + L+ P PG + +D T G G+S +F K +I +DRD A+S Sbjct: 8 HQPVLLRDCVDLVVPALARPGSIAVDCTLGLAGHSTAFLKASPQARLIGIDRDTEALSLA 67 Query: 75 QETMR--DYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQK 129 + MR ++F A F + D+G+D V DLG+SS+QID +RGFS+ Sbjct: 68 TQRMRMEGLADRFIPVHAAFDDFAQVLDDQGIDQVNAVFMDLGLSSLQIDETERGFSYSH 127 Query: 130 SGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM ++A ++ + + DL RI GEE+ + +IA IV+RR+ P T+ Sbjct: 128 DAPLDMRMDVTQPLTAEQILAEYSFADLVRIFRTYGEERFSKQIAREIVRRREIEPLTTS 187 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ L+ + V + +PA R FQALRI VN E+++LA L L GG L+V Sbjct: 188 GQLNRLVDEVVPQAHRPAGNPAKRVFQALRIEVNGELDKLAGTLPQIANHLAVGGRLVVE 247 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 S+HSLED+ VK F + + F+ +T+ + +E++A N RS S Sbjct: 248 SYHSLEDKTVKTFMNQGLKADVPADMPVIPPDMMPFFKELTRGAIKAAEEEIAMNPRSAS 307 Query: 309 AKLRAGM 315 +LRA Sbjct: 308 VRLRAVE 314 >gi|15827426|ref|NP_301689.1| S-adenosyl-methyltransferase MraW [Mycobacterium leprae TN] gi|221229903|ref|YP_002503319.1| S-adenosyl-methyltransferase MraW [Mycobacterium leprae Br4923] gi|13092976|emb|CAC31287.1| conserved hypothetical protein [Mycobacterium leprae] gi|219933010|emb|CAR71001.1| conserved hypothetical protein [Mycobacterium leprae Br4923] Length = 372 Score = 325 bits (835), Expect = 4e-87, Method: Composition-based stats. Identities = 117/321 (36%), Positives = 174/321 (54%), Gaps = 18/321 (5%) Query: 15 HTIGDHVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKMGS--NVIAL 64 ++ HVPV ++ + LL PA +++DAT G GG++ F +I L Sbjct: 37 SSVFGHVPVFAQRCVTLLAPALTRHHADGSNAILVDATLGVGGHAERFLTEFPGLRLIGL 96 Query: 65 DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSSMQI 118 DRDP A+ + + + ++ +L + L + G VDGV+FDLGVSSMQ+ Sbjct: 97 DRDPSALDIARTRLMRFADRVTLIHTRYDNLAVALNKFGYAAVESVDGVLFDLGVSSMQL 156 Query: 119 DCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177 DC +RGFS+ + PLDMRM S +SA+D+VN + L IL GEE+ A RIA IV Sbjct: 157 DCAERGFSYAQDVPLDMRMDPWSPVSAADIVNNYDEAALADILRRYGEERFARRIAAHIV 216 Query: 178 KRRQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236 +RR PF +T +L +L+ + + ++ HPA R+FQALRI VN+E+ L+ L +A Sbjct: 217 RRRAHTPFTSTAELVALLYQAIPAPARRIGGHPAKRTFQALRIAVNDELNSLSNVLPAAL 276 Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296 AL G L+V+++ SLEDR+VK+ FA I H F+ +T+ Sbjct: 277 DALTVAGRLVVLAYQSLEDRIVKRVFADAVSSRTPAGLPIELPGHGPRFRLLTRGAEHAD 336 Query: 297 QEDVAFNRRSRSAKLRAGMRT 317 ++ N RS + +LRA RT Sbjct: 337 AAEIECNPRSAAVRLRALQRT 357 >gi|261838057|gb|ACX97823.1| hypothetical protein KHP_0616 [Helicobacter pylori 51] Length = 308 Score = 325 bits (835), Expect = 5e-87, Method: Composition-based stats. Identities = 114/311 (36%), Positives = 176/311 (56%), Gaps = 14/311 (4%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70 + H VLL++V+ P V++D T G GG+S++ + +I +D+D FA Sbjct: 1 MQEIENLHQSVLLQEVLQAFAPLEEGVLIDCTLGLGGHSKAILSQKPHLKLIGIDKDKFA 60 Query: 71 VSCGQETMRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSF 127 +E ++ ++ +++L F++ ++ + + GV+ DLGVSS+Q+D +RGF+F Sbjct: 61 QEIAKERLKAFEGRYNLLSGGFAKRFKEALETHNKEIKGVLVDLGVSSLQLDDDNRGFNF 120 Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 S LDMRM SG++A V+N +V L +I GE K+ +IAH I +RR PF+ Sbjct: 121 -HSHALDMRMDLESGLNAQKVINSYSVVALEKIFRDYGEIKEYKKIAHKITERRAKKPFK 179 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 +DLS + FSKN +IHPAT FQA+RI VN E+EEL + L+ A G +L Sbjct: 180 DAKDLSDFLSS---FSKNKKIHPATLVFQAVRIEVNRELEELKEFLQCARNL--KGAILC 234 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 V+SFHSLED LVK F + + + + A+ + +TKK + P+ E++ NR Sbjct: 235 VISFHSLEDALVKNAFKDYAKNCICNPLSFKCTCSNNHALGEILTKKPITPSPEEIKNNR 294 Query: 305 RSRSAKLRAGM 315 RSRSAK+R Sbjct: 295 RSRSAKMRVFQ 305 >gi|56707815|ref|YP_169711.1| S-adenosyl-methyltransferase MraW [Francisella tularensis subsp. tularensis SCHU S4] gi|110670286|ref|YP_666843.1| S-adenosyl-methyltransferase [Francisella tularensis subsp. tularensis FSC198] gi|224456886|ref|ZP_03665359.1| S-adenosyl-methyltransferase [Francisella tularensis subsp. tularensis MA00-2987] gi|254370311|ref|ZP_04986316.1| S-adenosyl-methyltransferase [Francisella tularensis subsp. tularensis FSC033] gi|254874629|ref|ZP_05247339.1| S-adenosyl-methyltransferase [Francisella tularensis subsp. tularensis MA00-2987] gi|68565439|sp|Q5NGY1|RSMH_FRATT RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|123169471|sp|Q14ID3|RSMH_FRAT1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|56604307|emb|CAG45328.1| S-adenosyl-methyltransferase [Francisella tularensis subsp. tularensis SCHU S4] gi|110320619|emb|CAL08711.1| S-adenosyl-methyltransferase [Francisella tularensis subsp. tularensis FSC198] gi|151568554|gb|EDN34208.1| S-adenosyl-methyltransferase [Francisella tularensis subsp. tularensis FSC033] gi|254840628|gb|EET19064.1| S-adenosyl-methyltransferase [Francisella tularensis subsp. tularensis MA00-2987] gi|282158991|gb|ADA78382.1| S-adenosyl-methyltransferase [Francisella tularensis subsp. tularensis NE061598] Length = 305 Score = 325 bits (834), Expect = 5e-87, Method: Composition-based stats. Identities = 117/309 (37%), Positives = 177/309 (57%), Gaps = 16/309 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76 H VLL++ I LN P + +DATFG GG+S++ +IA D+D A+S +E Sbjct: 1 MHYSVLLQESINDLNINPQGIYIDATFGRGGHSKAILNRLTTGRLIAFDKDLDAISYARE 60 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + F + A+F+ + DY +DG++ DLGVSS Q+D RGFSF +GP Sbjct: 61 NFQF--SNFEIVHASFASIYDYCLQHSLLGKIDGIIMDLGVSSPQLDNAARGFSFTHNGP 118 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTTQD 190 LDMRM S GI+AS + + +V DL+ I + GEE+ A +IA I +Q+ + T + Sbjct: 119 LDMRMDVSKGITASQALEELSVDDLSYIFKVYGEERFAKKIALRIKDYIQQNGSIRKTLE 178 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ LI T+ K + +PATR FQALRI+VNNE+++L L + +K+GG + +SF Sbjct: 179 LAELILATI--GKKEKKNPATRCFQALRIYVNNELKDLEALLENILAVIKSGGRIAAISF 236 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH---MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 HSLEDR+VK+ F++ + M+P ++ + ITKK ++++ N RSR Sbjct: 237 HSLEDRIVKQKFSALINPKQELNRITKMLPQDSSQIKLKWITKKS-KANEDELNQNVRSR 295 Query: 308 SAKLRAGMR 316 SA LR + Sbjct: 296 SAILRVVEK 304 >gi|325962941|ref|YP_004240847.1| S-adenosyl-methyltransferase MraW [Arthrobacter phenanthrenivorans Sphe3] gi|323469028|gb|ADX72713.1| S-adenosyl-methyltransferase MraW [Arthrobacter phenanthrenivorans Sphe3] Length = 330 Score = 325 bits (834), Expect = 5e-87, Method: Composition-based stats. Identities = 114/311 (36%), Positives = 169/311 (54%), Gaps = 15/311 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKMGS- 59 M T HVPVL ++ I LL P V +DAT G GG+S + + Sbjct: 1 MDEHQKPTSERHVPVLRDRCINLLAPGFEAARLRGETPVAIDATLGMGGHSEAMLQRFPD 60 Query: 60 -NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSS 115 ++I +DRD A++ E + + + L A + ++ D + D GV G++ DLGVSS Sbjct: 61 LHLIGIDRDEEALALAGERLAPFAARTDLVHAVYDEIPDVLADLGVSEVHGILMDLGVSS 120 Query: 116 MQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAH 174 +Q+D +RGF++ PLDMRM S G +A+DVVN + ++L RI+ GEEK A RIA+ Sbjct: 121 LQLDERERGFAYSFDAPLDMRMDTSRGQTAADVVNTYSEEELVRIIRKWGEEKFAGRIAN 180 Query: 175 AIVKRRQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLR 233 IV R PF TT +L I+ V + HPA R+FQALRI VN E++ L + + Sbjct: 181 RIVAARAVKPFSTTGELVEQIRSVVPASAAKTGGHPAKRTFQALRIEVNEELDVLERAVP 240 Query: 234 SAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV 293 +A +L GG ++V+S+HSLED++VK RS + + H +++TK Sbjct: 241 AAVDSLAMGGRIVVMSYHSLEDKIVKGVLQGRSKSSAPLGFPVELEEHKPELKTLTKGTE 300 Query: 294 VPTQEDVAFNR 304 VPT ++A N Sbjct: 301 VPTAVEIAENP 311 >gi|289826154|ref|ZP_06545266.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 279 Score = 325 bits (834), Expect = 6e-87, Method: Composition-based stats. Identities = 109/271 (40%), Positives = 161/271 (59%), Gaps = 12/271 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ Q Sbjct: 6 KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAQ 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +FS+ FS L DYV ++ +DG++ DLGVSS Q+D +RGFSF + G Sbjct: 66 TI---NDPRFSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFMRDG 122 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + G SA++ + A D+ +L GEE+ A RIAHAIV+R + P T++ Sbjct: 123 PLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIAHAIVERNREQPMTRTKE 182 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L +GG L ++SF Sbjct: 183 LAEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLASGGRLSIISF 241 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAH 281 HSLEDR+VK+F +S + + A Sbjct: 242 HSLEDRIVKRFMREQSRGPQVPAGLPMTEAQ 272 >gi|268680046|ref|YP_003304477.1| S-adenosyl-methyltransferase MraW [Sulfurospirillum deleyianum DSM 6946] gi|268618077|gb|ACZ12442.1| S-adenosyl-methyltransferase MraW [Sulfurospirillum deleyianum DSM 6946] Length = 304 Score = 325 bits (834), Expect = 6e-87, Method: Composition-based stats. Identities = 100/301 (33%), Positives = 162/301 (53%), Gaps = 9/301 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76 H+PVLLE+V A + VI+D T G GG+S + + + +I D+D A++ ++ Sbjct: 4 PHIPVLLEEVKAAFSNISDGVIIDCTLGYGGHSEALLEQNPHIRLIGCDQDEEALAFSKK 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + + E+ F+ + + G++ D+GVSS+Q+D +RGF+F LDMR Sbjct: 64 RLERFGERVMFHHGNFASVIAQYAHLPIRGILADIGVSSLQLDKKERGFAFDSEV-LDMR 122 Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M+ +SA +VVN + L I GE ++A + + R AP Q+ ++L S + Sbjct: 123 MNPHQSLSAYEVVNHYTKEQLEFIFREYGEIHAYQKMAQLMCEARLKAPIQSAKEL-SFL 181 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + + K+ IHPAT FQA+RI VNNE+ L Q L S + A ++ ++SFHSLED Sbjct: 182 AQKIPGKKS--IHPATLLFQAIRIEVNNELGVLTQLLESIQNAGFTQCIVGIISFHSLED 239 Query: 256 RLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 R+VK+ F S + H+ + A+ + I+KK + + ++ N RSRSA+LR Sbjct: 240 RIVKQTFKFWSQNCICPPHVMRCMCGNNHALGKIISKKPIEASPLELKKNPRSRSARLRV 299 Query: 314 G 314 Sbjct: 300 F 300 >gi|292616071|ref|XP_689063.3| PREDICTED: probable S-adenosyl-L-methionine-dependent methyltransferase METT5D1-like isoform 2 [Danio rerio] gi|292616073|ref|XP_002662882.1| PREDICTED: probable S-adenosyl-L-methionine-dependent methyltransferase METT5D1-like [Danio rerio] Length = 402 Score = 325 bits (833), Expect = 7e-87, Method: Composition-based stats. Identities = 125/335 (37%), Positives = 180/335 (53%), Gaps = 38/335 (11%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77 H PV++++V+ LN PG+++LD TFGAGG+S++ + G V+A DRDP A Q+ Sbjct: 67 HTPVMVKEVLQFLNIKPGQIVLDLTFGAGGHSKAILQSVPGVTVVAADRDPTAFRMAQQL 126 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKG-----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +Y+ + FS+L + +P G VD + D G SSMQ+D +RGFS K GP Sbjct: 127 AEEYQGKVKPVLGRFSELNNLLPALGLGPGTVDAALLDAGCSSMQMDSAERGFSLSKDGP 186 Query: 133 LDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM A+DVVN + + L +L GEE+ +IA AI + R P T Sbjct: 187 LDMRMDGDRYPDMPCAADVVNALDQQALASVLAAYGEERHTRKIAAAIAQARSVYPIGRT 246 Query: 189 QDLSSLIQKTVYF----SKNNRI----HPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 L+S++ ++ +R+ H AT++FQALRIFVN+E+ EL GLR A+ L+ Sbjct: 247 LQLASIVAGAFPASALYARRDRLQRPSHVATKTFQALRIFVNDELNELHAGLRVAQTLLR 306 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSIT---------- 289 G L V++FHSLEDRL K+F R + + A PA + Sbjct: 307 PKGRLCVLTFHSLEDRLTKRFLRGEDLAAPPRRSLRQHARARPAGQEEEFEEEEEGDEGG 366 Query: 290 --------KKVVVPTQEDVAFNRRSRSAKLRAGMR 316 KKV+ P++E+V N R+RSAKLR +R Sbjct: 367 NSVHWVSLKKVIKPSEEEVQENPRARSAKLRTAVR 401 >gi|326440704|ref|ZP_08215438.1| 16S rRNA m(4)C1402 methyltranserfase [Streptomyces clavuligerus ATCC 27064] Length = 309 Score = 325 bits (833), Expect = 7e-87, Method: Composition-based stats. Identities = 123/306 (40%), Positives = 178/306 (58%), Gaps = 10/306 (3%) Query: 24 LLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETM 78 +L++ + LL PA PG V++D T G GG+S + +IALDRDP A+ E + Sbjct: 1 MLQRCLDLLAPALESPGAVVVDCTLGLGGHSEALLSRFPGVRLIALDRDPEALRLSAERL 60 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 Y E+ +L A + +L + GV GV+FDLGVSSMQ+D DRGF++ + PLDM Sbjct: 61 APYGERATLVHAVYDELPAVLARLGVPRVQGVLFDLGVSSMQLDEADRGFAYAQDAPLDM 120 Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM + G+SA++V+N +L RIL GEEKQA RI AIV+ R + PF T+ L L Sbjct: 121 RMDQTTGMSAAEVLNTYPPGELVRILRAYGEEKQAKRIVSAIVRERVNEPFSTSARLVEL 180 Query: 195 IQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 I+ + +K +PA R+FQALRI VN E+ L + + +A AL G + V+S+HSL Sbjct: 181 IRDALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAVPAAVAALAVEGRIAVLSYHSL 240 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 EDRLVK+ FA+ + + + + +T+ +PT ++VA NRR+ A+LR Sbjct: 241 EDRLVKQVFAAGAATTAPPGLPVVPEEYQPRLRLLTRGAELPTDDEVAENRRAAPARLRG 300 Query: 314 GMRTVE 319 R E Sbjct: 301 AQRIRE 306 >gi|150021597|ref|YP_001306951.1| S-adenosyl-methyltransferase MraW [Thermosipho melanesiensis BI429] gi|262825837|sp|A6LNR5|RSMH_THEM4 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|149794118|gb|ABR31566.1| S-adenosyl-methyltransferase MraW [Thermosipho melanesiensis BI429] Length = 291 Score = 325 bits (833), Expect = 7e-87, Method: Composition-based stats. Identities = 108/307 (35%), Positives = 164/307 (53%), Gaps = 30/307 (9%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76 H+PVL +V+ L + +D T G GG++ K S VIA+D D + Q+ Sbjct: 7 KHIPVLPNEVVEYLLWKDNGIYVDCTAGEGGHTFLIAKKCPNSRVIAIDVDLEVLEIAQK 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ + L +A++ L + G V G++ DLG+S+ Q+ RGFSF + PL Sbjct: 67 NLKAF-HNVILLKASYVDLPVVLKSLGIERVSGILADLGISTYQLKAEGRGFSFNRDEPL 125 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM SA + N + + L++I+ GEE+ A RIA IVK R P TT++L Sbjct: 126 DMRMDIQQDTSAHKITNFYSEEKLSKIIFKYGEERFARRIAKQIVKNR---PINTTKELV 182 Query: 193 SLIQKTVYFS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +I+K + S + + H AT++FQA+RI VN E++ + Q L++AE+ L+ GG L ++SF Sbjct: 183 EIIKKALPPSEIRKRKRHFATKTFQAIRIEVNKELKNIEQLLKNAEELLEIGGRLAIISF 242 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDR+VK F + + + I + PTQE+ N R+RSAK Sbjct: 243 HSLEDRIVKHFIKNSNN-----------------LKHIA-GPIKPTQEETKNNPRARSAK 284 Query: 311 LRAGMRT 317 LR R Sbjct: 285 LRVAERI 291 >gi|311742808|ref|ZP_07716616.1| S-adenosyl-methyltransferase MraW [Aeromicrobium marinum DSM 15272] gi|311313488|gb|EFQ83397.1| S-adenosyl-methyltransferase MraW [Aeromicrobium marinum DSM 15272] Length = 325 Score = 325 bits (833), Expect = 8e-87, Method: Composition-based stats. Identities = 117/317 (36%), Positives = 184/317 (58%), Gaps = 12/317 (3%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVIL-----DATFGAGGYSRSFCKMGSNV--IALDRD 67 HT HVPV L++V+ LL PA D T G GG++ + + ++ + +DRD Sbjct: 9 HTRPSHVPVALDRVLDLLAPAVEAAGEAAVVVDTTLGLGGHTAAMLQRFPDLRVVGIDRD 68 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRG 124 P A+ E + D + +L A + ++ D + + GV DGV+FDLGVSSMQ+D G+RG Sbjct: 69 PDALRLAAERLADVAGRVTLVHAVYDRIADALDEAGVERVDGVLFDLGVSSMQLDVGERG 128 Query: 125 FSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 F++ + PLDMRM + GI+A++V+N DL R+L GEEK A RIA A+V R Sbjct: 129 FAYAQDAPLDMRMDPTTGITAAEVLNTYAAGDLARVLRTYGEEKFARRIADAVVAERDEH 188 Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 PF T+ L L+++++ + + +PA R+FQALRI VN+E+ + L +A AL+ G Sbjct: 189 PFDTSPRLVDLVRRSIPAAARRTGGNPAKRTFQALRIEVNDELGAYERALPAALSALRPG 248 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G ++V+++HSLEDR+ K+ FA + + H A F+S+T+ + + ++ Sbjct: 249 GRVVVLAYHSLEDRITKRTFARITTTQVPRDLPFVPAGHAAEFRSLTRGAELASPAEIDE 308 Query: 303 NRRSRSAKLRAGMRTVE 319 N R++S +LRA R Sbjct: 309 NPRAQSVRLRAVERIAA 325 >gi|119358493|ref|YP_913137.1| S-adenosyl-methyltransferase MraW [Chlorobium phaeobacteroides DSM 266] gi|263446010|sp|A1BJY6|RSMH_CHLPD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|119355842|gb|ABL66713.1| S-adenosyl-methyltransferase MraW [Chlorobium phaeobacteroides DSM 266] Length = 329 Score = 325 bits (833), Expect = 8e-87, Method: Composition-based stats. Identities = 104/314 (33%), Positives = 158/314 (50%), Gaps = 19/314 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--------VIALDRDPFAV 71 H PVL +V L P + +D T G GG++ + + +I +D+D A+ Sbjct: 7 HEPVLAAQVTDFLVLRP-GIYIDGTLGGGGHALAIMRALETAGFEKNSLLIGIDQDDEAL 65 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDK--------GVDGVVFDLGVSSMQIDCGDR 123 T+ YKE L + FS ++ + G++ DLGVSS QID R Sbjct: 66 HAASTTLSWYKETTVLVKGNFSDVRSILGKVCKQRGLVSRAAGILLDLGVSSSQIDTAGR 125 Query: 124 GFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GFS+ + GPLDMRM CS +A+D+VN + K+L + GEE ++ IA IV R+ Sbjct: 126 GFSYLQKGPLDMRMDRCSSTTAADIVNTLDEKELAGLFFRYGEEPRSRMIARHIVNYREQ 185 Query: 183 APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 T ++ + I + + +I +R FQALRI VN E+E L Q L L Sbjct: 186 TGAVTGTEVLAAIIRNAERDPHKQIKTLSRVFQALRIEVNQELEVLKQALSDGVDCLDYH 245 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVA 301 G + V+S+HSLEDR+VK FF +S + + + H V +T+K ++ ++++ Sbjct: 246 GRMAVISYHSLEDRIVKSFFVEKSKSDWGPKGVGMREPLHKGVLGLVTRKPLIADEKEIQ 305 Query: 302 FNRRSRSAKLRAGM 315 N R+RSAKLR Sbjct: 306 ENPRARSAKLRVVE 319 >gi|314929325|gb|EFS93156.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL044PA1] Length = 337 Score = 325 bits (833), Expect = 8e-87, Method: Composition-based stats. Identities = 112/321 (34%), Positives = 173/321 (53%), Gaps = 11/321 (3%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPG---KVILDATFGAGGYSRSFCKMGSN--VIA 63 M++ + HVPV+ +++ LL P +V +D T G GG++ + + ++ Sbjct: 3 MATDAIGSDAVHVPVMRARILDLLGPTLESGRRVHVDGTLGMGGHAEAVLTRFPDVQLVG 62 Query: 64 LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDC 120 +DRD A++ ++ + ++ L A +L + + D G VD V+ DLG+SS+QID Sbjct: 63 IDRDQQALTMAGARLKPFVDRVHLVHAVHDELPEVLDDLGLGRVDSVLLDLGLSSLQIDE 122 Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS+ PLDMRM S G +A+ V+N+++ DL RIL GEEK A RI AIV Sbjct: 123 VNRGFSYSVDSPLDMRMDQSRGRTAAQVLNESDPGDLVRILHEYGEEKFADRIVRAIVTE 182 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSKNNR--IHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 R P +T+ L +I + + + ++ HPA R+FQALRI VN E+E L+ L A Sbjct: 183 RDRQPIETSGRLVEIITRAIPVAVRHKRSGHPAKRTFQALRIAVNREMETLSAVLPRALD 242 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297 L GG + V+++HSLEDR VK+ F I + A F +T+ P Sbjct: 243 RLNVGGRIAVLAYHSLEDRPVKEVFREACDDTAPAGLPIVPESMAAKFSPVTRGAERPDA 302 Query: 298 EDVAFNRRSRSAKLRAGMRTV 318 ++++ N RS SA+LR R Sbjct: 303 DEMSANPRSASARLRVIERVR 323 >gi|145220562|ref|YP_001131271.1| S-adenosyl-methyltransferase MraW [Prosthecochloris vibrioformis DSM 265] gi|262824996|sp|A4SH10|RSMH_PROVI RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|145206726|gb|ABP37769.1| S-adenosyl-methyltransferase MraW [Chlorobium phaeovibrioides DSM 265] Length = 327 Score = 324 bits (832), Expect = 9e-87, Method: Composition-based stats. Identities = 111/320 (34%), Positives = 166/320 (51%), Gaps = 21/320 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC--------KMGSNVIALDRDPFAV 71 H PVL + +++L P + LD T G GG+S + GS ++ +D+D A+ Sbjct: 9 HEPVLAPESVSMLVRGP-GLYLDGTLGGGGHSLAILCELERSGWLEGSLLLGIDQDDEAL 67 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVP--------DKGVDGVVFDLGVSSMQIDCGDR 123 E + DY+E + F + + G++ DLGVSS Q+D R Sbjct: 68 QEAGERLADYREHAVALKGNFGNIAALSAREAGSRGMEPQASGILLDLGVSSHQLDVPLR 127 Query: 124 GFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR-Q 181 GFS+ + GPLDMRM +A+D++N A +L I GEE + IA A+ RR + Sbjct: 128 GFSYMQPGPLDMRMDSGATGTAADILNTAPEAELASIFFRYGEEPLSRVIARAVTTRRVE 187 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 PF TT +L+ L++ V F + + +R FQALRI VN E+E L + L LK Sbjct: 188 KGPFHTTDELADLVRSVV-FGRERVMKSLSRVFQALRIAVNQELEVLERVLGDGVMLLKP 246 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDV 300 GG + V+S+HSLEDR+VK+FF+S + + + + PA ++T K V E+V Sbjct: 247 GGRMAVISYHSLEDRMVKRFFSSLTTADWGPKGVGLREPVRPAAAIAVTGKPVRAGAEEV 306 Query: 301 AFNRRSRSAKLRAGMRTVER 320 A N R+RSAK+R + R Sbjct: 307 ARNPRARSAKMRVIEKMENR 326 >gi|83748758|ref|ZP_00945773.1| S-adenosyl-methyltransferase mraW [Ralstonia solanacearum UW551] gi|207721512|ref|YP_002251952.1| s-adenosyl-methyltransferase mraw protein [Ralstonia solanacearum MolK2] gi|207744409|ref|YP_002260801.1| s-adenosyl-methyltransferase mraw protein [Ralstonia solanacearum IPO1609] gi|83724579|gb|EAP71742.1| S-adenosyl-methyltransferase mraW [Ralstonia solanacearum UW551] gi|206586672|emb|CAQ17258.1| s-adenosyl-methyltransferase mraw protein [Ralstonia solanacearum MolK2] gi|206595814|emb|CAQ62741.1| s-adenosyl-methyltransferase mraw protein [Ralstonia solanacearum IPO1609] Length = 319 Score = 324 bits (832), Expect = 9e-87, Method: Composition-based stats. Identities = 112/314 (35%), Positives = 175/314 (55%), Gaps = 23/314 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VL ++ + L + +D TFG GG+SR + G +IA D+DP A++ Sbjct: 11 HQTVLRDEAVDALLWRDDGIYIDGTFGRGGHSRLILERLGPGGRLIAFDKDPAAITEAG- 69 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +F++ +F+ L + +G V GV+ DLG+SS QID G RGFSF+ GPL Sbjct: 70 --TVEDARFAIEHDSFAHLDAALDARGIGRVAGVLLDLGISSPQIDEGARGFSFRMDGPL 127 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS----APFQTT 188 DMRM + GI+A+ + +A+ +D+ R++ GEE+ A +IA AIV RR P T Sbjct: 128 DMRMDTTRGITAAQWLAEADERDIARVIRDYGEERFAVQIAKAIVARRSESGTRGPLDRT 187 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L++L+ + V + PATR+FQALRI VN E+ +L GL++A + L+ GG L+V+ Sbjct: 188 SELAALVAQAVKT-REKGQDPATRTFQALRIHVNQELADLETGLKAAFERLEQGGRLVVI 246 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPS------NAHPAVFQSITKKVVVPTQEDVAF 302 SFHSLEDR+VK+F + + + + + + + V P++ +V+ Sbjct: 247 SFHSLEDRIVKRFMQALARPEQSAAPEMRRAPLRAHELPAPQLRLLGR--VRPSEAEVSA 304 Query: 303 NRRSRSAKLRAGMR 316 N R+RSA +R R Sbjct: 305 NPRARSAIMRVAER 318 >gi|317010927|gb|ADU84674.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori SouthAfrica7] Length = 308 Score = 324 bits (832), Expect = 9e-87, Method: Composition-based stats. Identities = 114/304 (37%), Positives = 177/304 (58%), Gaps = 14/304 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 H VLL++V+ + P V++D T G GG+S++ ++ I +D+D A +E Sbjct: 8 HQSVLLQEVLQVFAPLEKGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKHAQEIAKER 67 Query: 78 MRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++ ++E++ + F++ ++ + G + GV+ DLGVSS+Q+D DRGF+F S LD Sbjct: 68 LKTFEERYHILSGGFAKRFKEALETHGEQIKGVLVDLGVSSLQLDDDDRGFNF-HSPTLD 126 Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM S ++A V+N +V L +I GE K+ +IAH IV+RR PF+ +DLS Sbjct: 127 MRMDLESELNAQKVINSYSVVALEKIFKDYGEIKEYKKIAHHIVERRAKKPFKDAKDLSD 186 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 + SKN +IHPAT FQA+RI VN+E+EEL + L+ A G +L V+SFHSL Sbjct: 187 FLSS---LSKNKKIHPATLVFQAIRIEVNHELEELKEFLQDARNL--KGAILCVISFHSL 241 Query: 254 EDRLVKKFFASRSGKVMA--VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 ED LVK F + + + + + A+ + +TKK + P+ E++ NRRSRSAK+ Sbjct: 242 EDALVKNAFKDYAKNCICDALSFKCTCSNNHALGEILTKKPITPSPEEIKRNRRSRSAKM 301 Query: 312 RAGM 315 R Sbjct: 302 RVFQ 305 >gi|54023726|ref|YP_117968.1| S-adenosyl-methyltransferase MraW [Nocardia farcinica IFM 10152] gi|115311586|sp|Q5YYY7|RSMH_NOCFA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|54015234|dbj|BAD56604.1| putative methyltransferase [Nocardia farcinica IFM 10152] Length = 324 Score = 324 bits (832), Expect = 9e-87, Method: Composition-based stats. Identities = 115/317 (36%), Positives = 176/317 (55%), Gaps = 13/317 (4%) Query: 18 GDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVS 72 HVPVLLE+ LL PA PG V +DAT G GG++ F ++ LDRD A+ Sbjct: 8 ARHVPVLLERADELLGPALTEPGAVYVDATLGLGGHAEHFLTRYPGLRLVGLDRDTEALR 67 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSSMQIDCGDRGFS 126 E + + E+ +L + + D + G V ++ DLGVSSMQ+D +RGF+ Sbjct: 68 LAGERLAPFAERITLVHTRYDGIADALGQAGLPPTGSVSAILMDLGVSSMQLDEAERGFA 127 Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 + PLDMRM SGI+A+DV+N + DL R+L GEE+ A +IA +++RR PF Sbjct: 128 YSVDAPLDMRMDPTSGITAADVLNTYSHGDLARVLKNYGEERFAGKIASEVIRRRAHKPF 187 Query: 186 QTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 +T+ +L L+ T+ + + HPA R+FQALR+ VN E++ L L +A AL+ GG Sbjct: 188 ETSGELVELLYATIPAAARRTGGHPAKRTFQALRVEVNGELDSLRAALPAALDALRVGGR 247 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 ++V+S+ SLEDR+VK+ A+R+ V + F+ +T+ + ++A N Sbjct: 248 IVVMSYQSLEDRVVKQELAARTSSRTPVDLPVELPGMGPEFRLLTRGAEKAGEREIAENP 307 Query: 305 RSRSAKLRAGMRTVERS 321 R+ ++RA R S Sbjct: 308 RAAPVRMRAAERIEAAS 324 >gi|328906989|gb|EGG26755.1| S-adenosyl-methyltransferase MraW [Propionibacterium sp. P08] Length = 346 Score = 324 bits (832), Expect = 9e-87, Method: Composition-based stats. Identities = 112/321 (34%), Positives = 173/321 (53%), Gaps = 11/321 (3%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPG---KVILDATFGAGGYSRSFCKMGSN--VIA 63 M++ + HVPV+ +++ LL P +V +D T G GG++ + + ++ Sbjct: 12 MATDAIGSDAVHVPVMRARILDLLGPTLESGRRVHVDGTLGMGGHAEAVLTRFPDVQLVG 71 Query: 64 LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDC 120 +DRD A++ ++ + ++ L A +L + + D G VD V+ DLG+SS+QID Sbjct: 72 IDRDQQALTMAGARLKPFVDRVHLVHAVHDELPEVLDDLGLGRVDSVLLDLGLSSLQIDE 131 Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS+ PLDMRM S G +A+ V+N+++ DL RIL GEEK A RI AIV Sbjct: 132 VNRGFSYSVDSPLDMRMDQSRGRTAAQVLNESDPGDLVRILHEYGEEKFADRIVRAIVTE 191 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSKNNR--IHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 R P +T+ L +I + + + ++ HPA R+FQALRI VN E+E L+ L A Sbjct: 192 RDRQPIETSGRLVEIITRAIPVAVRHKRSGHPAKRTFQALRIAVNREMETLSAVLPRALD 251 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297 L GG + V+++HSLEDR VK+ F I + A F +T+ P Sbjct: 252 RLNVGGRIAVLAYHSLEDRPVKEVFREACDDTAPAGLPIVPESMAAKFSPVTRGAERPDA 311 Query: 298 EDVAFNRRSRSAKLRAGMRTV 318 ++++ N RS SA+LR R Sbjct: 312 DEMSANPRSASARLRVIERVR 332 >gi|261839470|gb|ACX99235.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori 52] Length = 302 Score = 324 bits (832), Expect = 9e-87, Method: Composition-based stats. Identities = 113/305 (37%), Positives = 173/305 (56%), Gaps = 14/305 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76 H VLL++V+ P V++D T G GG+S++ + +I +D+D FA +E Sbjct: 1 MHQSVLLQEVLQAFAPLEEGVLIDCTLGLGGHSKAILSQKPHLKLIGIDKDKFAQEIAKE 60 Query: 77 TMRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ ++ +++L F++ ++ + G + GV+ DLGVSS+Q+D +RGF+F S L Sbjct: 61 RLKAFEGRYNLLSGGFAKRFKEALETHGKEIKGVLVDLGVSSLQLDDDNRGFNF-HSHAL 119 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM G ++A V+N V L +I GE K+ +IAH I +RR PF+ +DLS Sbjct: 120 DMRMDLEGDLNAQKVINSYPVVALEKIFKDYGEIKEYKKIAHKIAERRAKKPFKDAKDLS 179 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 + SKN +IHPAT FQA+RI VN E+EEL + L+ A G +L V+SFHS Sbjct: 180 DFLSS---LSKNKKIHPATLVFQAVRIEVNRELEELKEFLQCARNL--KGAILCVISFHS 234 Query: 253 LEDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 LED LVK F + + + + A+ + +TKK + P+ E++ NRRSRSAK Sbjct: 235 LEDSLVKNAFKDYAKNCICDPLSFKCTCSNNHALGEILTKKPITPSPEEIKNNRRSRSAK 294 Query: 311 LRAGM 315 +R Sbjct: 295 MRVFQ 299 >gi|222100677|ref|YP_002535245.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Thermotoga neapolitana DSM 4359] gi|262825854|sp|B9KA96|RSMH_THENN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|221573067|gb|ACM23879.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Thermotoga neapolitana DSM 4359] Length = 300 Score = 324 bits (832), Expect = 9e-87, Method: Composition-based stats. Identities = 118/310 (38%), Positives = 181/310 (58%), Gaps = 30/310 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77 H+PV++ +VI L P K+ILD T G GG++R+ + G +I +D D + ++ Sbjct: 8 HIPVMVREVIEYLKPEDEKIILDCTVGEGGHARAILEHCPGCKLIGIDVDSEVLQIAEKK 67 Query: 78 MRDYKEQFSLFQATFSQ---LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++D+ ++ SLF+A++ L + + VDG++ DLGVS+ Q+ +RGF+F++ PLD Sbjct: 68 LKDFSDRVSLFKASYRDADFLLKTLEIEKVDGILLDLGVSTYQLKGENRGFTFEREEPLD 127 Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEK-QASRIAHAIVKRRQSAPFQTTQDLS 192 MRM S I+A V+N+ + ++L RI+ GEEK A RIA IV+ R P TT DL Sbjct: 128 MRMDLESEITAQKVLNELSEEELARIIFEYGEEKRYARRIARKIVENR---PLNTTLDLV 184 Query: 193 SLIQKTVYFS--KNNRIHPATRSFQALRIFVNNEIEEL-AQGLRSAEKALKAGGLLIVVS 249 + + + + + H ATR+FQA+RI+VN E+E L L AEK L+ GG ++V+S Sbjct: 185 KAVSEALPSHEIRRRKRHFATRTFQAIRIYVNRELENLREFLLNKAEKLLRVGGRIVVIS 244 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDR+VK+ F + + +T+K V P++E+V N RSRSA Sbjct: 245 FHSLEDRIVKEAFRNS-----------------RKLRILTEKPVRPSEEEVRENPRSRSA 287 Query: 310 KLRAGMRTVE 319 +LRA E Sbjct: 288 RLRAAELVEE 297 >gi|260063719|ref|YP_003196799.1| S-adenosyl-methyltransferase MraW [Robiginitalea biformata HTCC2501] gi|88783164|gb|EAR14337.1| S-adenosyl-methyltransferase MraW [Robiginitalea biformata HTCC2501] Length = 312 Score = 324 bits (832), Expect = 1e-86, Method: Composition-based stats. Identities = 105/309 (33%), Positives = 159/309 (51%), Gaps = 17/309 (5%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72 + H PVLL + + L +D TFG GG+SR +IA D+D A++ Sbjct: 3 EMKYHKPVLLRESVDGLAIREDGTYVDVTFGGGGHSREILGRLGPKGRLIAFDQDEEALA 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK 129 + E+F L F ++ ++ G VDG++ D GVSS Q D +RGFS + Sbjct: 63 N-----KPEDERFLLIGENFRYIRQFLKFYGILKVDGILADFGVSSHQFDRAERGFSTRF 117 Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRMS + I+A DVVN + + L +L GE + A +IA +V+ R A QTT Sbjct: 118 DAGLDMRMSRRAEITARDVVNTYSFEKLRSVLQRYGELRSAGKIAGELVRARDKASIQTT 177 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ + + K N++ R +QA+R+ VN E+ L L+ L GG L ++ Sbjct: 178 YGLNEAVSAFLPRGKENKV--LARIYQAIRMEVNQELAALEAFLQQTAALLPTGGRLSLI 235 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 S+HSLEDRLVK+F + + + + P F+ + K++VP +++ N R+RS Sbjct: 236 SYHSLEDRLVKRFIRTGKFEGEVDKDFYGNPLAP--FRKV-GKLIVPGDDELEENPRARS 292 Query: 309 AKLRAGMRT 317 AKLR RT Sbjct: 293 AKLRIAERT 301 >gi|225872742|ref|YP_002754199.1| S-adenosyl-methyltransferase MraW [Acidobacterium capsulatum ATCC 51196] gi|263433378|sp|C1F466|RSMH_ACIC5 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|225792322|gb|ACO32412.1| S-adenosyl-methyltransferase MraW [Acidobacterium capsulatum ATCC 51196] Length = 297 Score = 324 bits (832), Expect = 1e-86, Method: Composition-based stats. Identities = 118/308 (38%), Positives = 171/308 (55%), Gaps = 28/308 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HVPVLL+ I LN G DAT G G+S + ++ G +IA DRDP A+ + Sbjct: 6 HVPVLLQDAIRYLNVRRGGTYADATLGLAGHSSAIARLLGPGGTLIAFDRDPEAMELAKS 65 Query: 77 TMRDYK-------EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 + + + L FS+ +D + +DG++ D GVSS+Q D RGFSFQ Sbjct: 66 RLDALRAELGSEMPKVILHSTEFSEAEDLIEPGSLDGLLADFGVSSLQFDEAHRGFSFQA 125 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM+ G++A+ VVNQ K+L ++ GEE+++ RIA AIV+ R P TT Sbjct: 126 DGPLDMRMNPRVGLTAAQVVNQFGEKELADLIYEFGEERRSRRIARAIVRAR---PVSTT 182 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ ++ K+ RIHPATR+FQALRI+VN E+ ++ L+ A K L+ GG L+V+ Sbjct: 183 AQLARVVSAAAPAMKSERIHPATRTFQALRIYVNQELGQIEALLKVAPKLLRKGGRLVVI 242 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDR+ K +++ +T+K + +E+ N R+RS Sbjct: 243 SFHSLEDRIAKDALRE--------------GGQQGIYEVLTRKPLTAGEEETDRNPRARS 288 Query: 309 AKLRAGMR 316 AKLRA + Sbjct: 289 AKLRAAEK 296 >gi|88704092|ref|ZP_01101807.1| S-adenosyl-methyltransferase mraW [Congregibacter litoralis KT71] gi|88701919|gb|EAQ99023.1| S-adenosyl-methyltransferase mraW [Congregibacter litoralis KT71] Length = 308 Score = 324 bits (832), Expect = 1e-86, Method: Composition-based stats. Identities = 119/309 (38%), Positives = 174/309 (56%), Gaps = 9/309 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 H VLL + + L +P + +D TFG GG+SR + + A D+D A Sbjct: 2 AASHETVLLHEAVDALVGSPAGLYVDGTFGRGGHSREILRRLDNQGRLFACDKDEEAERD 61 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E + ++FS + +F+ L ++ ++G VDG++ DLGVSS Q+D +RGFSFQ+ Sbjct: 62 AEELLAG-DDRFSFARGSFAALPAFLEERGLGAVDGILLDLGVSSPQLDQAERGFSFQQD 120 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 GPLDMRM S G SA+D + A +++ +L GEE+ A RIA AIVK R P T Sbjct: 121 GPLDMRMDRSRGESAADWIAAAPEQEIIDVLREYGEERYARRIAAAIVKARSEKPLTRTA 180 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+S++ + + ++ HPATRSFQA+RI VN E+++LA+ L A L GG L+V+S Sbjct: 181 QLASIVSEAHPRWEKHK-HPATRSFQAIRIRVNRELDDLAELLSLALSVLAVGGRLVVIS 239 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRLVK+ S R + + V + K V + ++VA N RSRSA Sbjct: 240 FHSLEDRLVKRHLRDMSRGPQLPRDLPVRDVDVGVPMRLLGKAVRASDQEVAANPRSRSA 299 Query: 310 KLRAGMRTV 318 +R + Sbjct: 300 IMRCAEKIA 308 >gi|332531941|ref|ZP_08407825.1| S-adenosyl-methyltransferase MraW [Pseudoalteromonas haloplanktis ANT/505] gi|332038568|gb|EGI75011.1| S-adenosyl-methyltransferase MraW [Pseudoalteromonas haloplanktis ANT/505] Length = 285 Score = 324 bits (832), Expect = 1e-86, Method: Composition-based stats. Identities = 113/285 (39%), Positives = 166/285 (58%), Gaps = 13/285 (4%) Query: 42 DATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDY 98 D TFG GG+S + A+D+DP A+ E D +F++ FS L + Sbjct: 2 DGTFGRGGHSGQILARLGDEGRLQAIDQDPQAIQSA-EKFAD-DPRFAIAHTRFSNLYEV 59 Query: 99 VPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANV 153 VDG++ D+GVSS Q+D +RGFSF K GPLDMRM + G SA+ + +A + Sbjct: 60 AQQNDLIGKVDGILLDIGVSSPQLDDAERGFSFMKDGPLDMRMDPTTGRSAAQWLAEAEL 119 Query: 154 KDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRS 213 D+T ++ LGEEK RIAH +++ R+ P TT+ L+ L+ + V K+ HPATR+ Sbjct: 120 DDITHVIKKLGEEKFGKRIAHKVLEVREHTPITTTKQLADLVDEAVPV-KDKFKHPATRT 178 Query: 214 FQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVR 273 FQA+RI++N+E+EE+ L+SA K LK GG L+V+SFHSLEDR+VK+F +S R Sbjct: 179 FQAIRIYINSELEEIQTALQSAVKVLKPGGRLVVISFHSLEDRIVKQFIRKQSKGEALPR 238 Query: 274 HMIPSNAHPAVFQSI--TKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 + ++A ++ K + P+ +V N RSRS+ LR R Sbjct: 239 GLPLTDAQINKNLTLKAVGKAIKPSAAEVERNPRSRSSVLRIAQR 283 >gi|32490963|ref|NP_871217.1| hypothetical protein WGLp214 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|30173030|sp|Q8D2Y8|RSMH_WIGBR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|25166169|dbj|BAC24360.1| yabC [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 309 Score = 324 bits (832), Expect = 1e-86, Method: Composition-based stats. Identities = 108/309 (34%), Positives = 170/309 (55%), Gaps = 15/309 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H+PV+L +VI + P +DATFG GG+SR +I +DRDP ++ Sbjct: 1 MHIPVMLNEVIKSIKIIPNGTYIDATFGCGGHSRCILSKLNEKGKLIVIDRDPKSIEFAC 60 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + FS++ Y V G++FDLG+S QI +RGFSF G Sbjct: 61 SI---KDRRLIPIHGNFSKILKYSIKYKIFGKVQGILFDLGLSFSQIKDSNRGFSFMHDG 117 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ GISA + +N AN+KD++ ++ GEEK +I++ I K R+ TT++ Sbjct: 118 PLDMRMNNLHGISAKEWINNANIKDISFVIKEFGEEKFYKKISNVICKYRKIKNINTTKE 177 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L +LI K + + HPA RSFQA+RI++NNE++EL L K + G ++ +SF Sbjct: 178 LVNLINKACGY-FYKKKHPARRSFQAIRIYINNELQELKLALNDIIKIISPKGRIVFISF 236 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRSR 307 HSLEDR++KKF + S K + + + +++ K + P+++++ +N++SR Sbjct: 237 HSLEDRIIKKFIINNSRKKIYPYKLPILESKIKNDNIYKLKYFKKIQPSKKEILYNKKSR 296 Query: 308 SAKLRAGMR 316 SA LR + Sbjct: 297 SAILRFAEK 305 >gi|313677372|ref|YP_004055368.1| s-adenosyl-methyltransferase mraw [Marivirga tractuosa DSM 4126] gi|312944070|gb|ADR23260.1| S-adenosyl-methyltransferase MraW [Marivirga tractuosa DSM 4126] Length = 301 Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats. Identities = 101/303 (33%), Positives = 160/303 (52%), Gaps = 13/303 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77 H PV+L++ + L P + +D TFG GG+S++ + ++ D+D A + Sbjct: 5 HEPVMLQQCLDGLAIKPNGIYVDLTFGGGGHSKAILEKLTDGKLLGFDQDQDAEVNAEAI 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 F QA F ++ Y+ K VDGV+ DLGVSS Q + +RGFS + LD Sbjct: 65 NHP---GFEFVQANFRFVKKYLKLYRIKQVDGVLADLGVSSHQFNKAERGFSTRFDAELD 121 Query: 135 MRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM +A +V+N+ + DL +I G+ GE + A +A AIV R ++P T +L Sbjct: 122 MRMDQHAPVTAKEVINEYSESDLHKIFGLYGEVRNAKTLASAIVSARAASPINTIGELKE 181 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 ++ + + N+ + FQALRI VN E++ L + L E+ +K GG L+V+S+HSL Sbjct: 182 ILARFAKRGRENK--YYAQVFQALRIEVNEELKALEEALLQMEEVIKPGGRLVVMSYHSL 239 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 EDRLVK + + + P F+S+ +K + +E++ N R+RSAKLR Sbjct: 240 EDRLVKNYINKGKLDGEEEKDFYGNVLKP--FKSVNRKPITAEEEELENNNRARSAKLRI 297 Query: 314 GMR 316 + Sbjct: 298 AEK 300 >gi|17547571|ref|NP_520973.1| S-adenosyl-methyltransferase MraW [Ralstonia solanacearum GMI1000] gi|20138981|sp|Q8XVH9|RSMH_RALSO RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|17429875|emb|CAD16559.1| putative s-adenosyl-methyltransferase mraw protein [Ralstonia solanacearum GMI1000] Length = 319 Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats. Identities = 115/314 (36%), Positives = 176/314 (56%), Gaps = 23/314 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VL ++ I L + +D TFG GG+SR + G +IA D+DP A++ Sbjct: 11 HQTVLRDEAIDALLWRDDGIYIDGTFGRGGHSRLILERLGPGGRLIAFDKDPAAITEAG- 69 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +F++ +F+ L + +G V GV+ DLG+SS QID G RGFSF+ GPL Sbjct: 70 --TVEDARFAIEHDSFAHLDAALDARGIGRVAGVLLDLGISSPQIDEGARGFSFRMDGPL 127 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS----APFQTT 188 DMRM + GI+A+ + +A+ +D+ R++ GEE+ A +IA AIV RR+ P T Sbjct: 128 DMRMDTTRGITAAQWLAEADERDIARVIRDYGEERFAVQIAKAIVARRRESGTRGPLDRT 187 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L++L+ + V + PATR+FQALRI VN E+ +L GL+SA + L+ GG L+V+ Sbjct: 188 SELAALVAQAVKT-REKGQDPATRTFQALRIHVNQELADLETGLKSAFERLEQGGRLVVI 246 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPS------NAHPAVFQSITKKVVVPTQEDVAF 302 SFHSLEDR+VK+F + + + + + + + V P++ +V+ Sbjct: 247 SFHSLEDRIVKRFMQALARPEQSAAPEMRRAPLRAHELPAPQLRLLGR--VRPSEAEVSA 304 Query: 303 NRRSRSAKLRAGMR 316 N RSRSA +R R Sbjct: 305 NPRSRSAIMRVAER 318 >gi|332673556|gb|AEE70373.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori 83] Length = 308 Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats. Identities = 112/311 (36%), Positives = 174/311 (55%), Gaps = 14/311 (4%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70 + H VLL++V+ P V++D T G GG+S++ + +I +D+D FA Sbjct: 1 MQEIENLHQSVLLQEVLQAFAPLEEGVLIDCTLGLGGHSKAILSQKPHLKLIGIDKDKFA 60 Query: 71 VSCGQETMRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSF 127 +E ++ ++ +++L F++ ++ + + GV+ DLGVSS+Q+D +RGF+F Sbjct: 61 QEIAKERLKAFEGRYNLLSGGFAKRFKEALETHNKEIKGVLVDLGVSSLQLDDDNRGFNF 120 Query: 128 QKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 S LDMRM G ++A ++N V L +I GE K+ +IAH I +RR PF+ Sbjct: 121 -HSHALDMRMDLEGDLNAQKIINSYPVVALEKIFKDYGEIKEYKKIAHKIAERRAKKPFK 179 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 +DLS + FSKN +IHPAT FQA+RI VN E+EEL + L+ A G +L Sbjct: 180 DAKDLSDFLSS---FSKNKKIHPATLVFQAVRIEVNRELEELKEFLQCARNL--KGAILC 234 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 V+SFHSLED LVK F + + + + A+ + +TKK + P+ E++ NR Sbjct: 235 VISFHSLEDSLVKNAFKDYAKNCICDPLSFKCTCSNNHALGEILTKKPITPSPEEIKNNR 294 Query: 305 RSRSAKLRAGM 315 RSRSAK+R Sbjct: 295 RSRSAKMRVFQ 305 >gi|28493187|ref|NP_787348.1| S-adenosyl-methyltransferase MraW [Tropheryma whipplei str. Twist] gi|28572698|ref|NP_789478.1| S-adenosyl-methyltransferase [Tropheryma whipplei TW08/27] gi|42559466|sp|Q83GN7|RSMH_TROWT RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|42559467|sp|Q83HJ6|RSMH_TROW8 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|28410830|emb|CAD67216.1| S-adenosyl-methyltransferase [Tropheryma whipplei TW08/27] gi|28476228|gb|AAO44317.1| unknown [Tropheryma whipplei str. Twist] Length = 317 Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats. Identities = 115/306 (37%), Positives = 169/306 (55%), Gaps = 9/306 (2%) Query: 17 IGDHVPVLLEKVIALLNPA--PGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVS 72 + H+PV+L +V L+ P G V +DAT GAGG+S + G+ + +DRD +A++ Sbjct: 1 MNGHLPVMLGEVCQLIEPVLGIGDVFIDATLGAGGHSEAILMSSQGALLYGIDRDAYALA 60 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 ++ + + ++ TF + Y+ + +FDLG+SSMQID DRGFS+ KSGP Sbjct: 61 LARKRLSGFADRCKFVHDTFDKFDKYLSNLHPKVFLFDLGMSSMQIDNPDRGFSYMKSGP 120 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ S I+A +++N + L RI G+E+ A RIA I K R + TT + Sbjct: 121 LDMRMNESDKITAKEILNGYSETALIRIFRDYGQERYAKRIARQICKARSVSELVTTCQV 180 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 S LI+ + HPA R FQALRI VN+E+ L L A L+ GG ++V+S+H Sbjct: 181 SQLIRDVCPPHIR-KGHPAKRVFQALRIEVNSELLFLRTALEKALDLLQVGGRIVVLSYH 239 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+VK F S S + I ++ I K + P + ++A N R+ SA L Sbjct: 240 SLEDRIVKHLFRSVSVSQLPKGFYI---NKDPEYKLIGKDLKNPKETEIANNPRASSAHL 296 Query: 312 RAGMRT 317 RA R Sbjct: 297 RAVERV 302 >gi|328778908|ref|XP_001120634.2| PREDICTED: probable S-adenosyl-L-methionine-dependent methyltransferase CG14683-like [Apis mellifera] Length = 388 Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats. Identities = 123/328 (37%), Positives = 180/328 (54%), Gaps = 29/328 (8%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 H+PV++ +V+ L P+PGK+ +D TFGAGG+S + N+ ALDRDP A + Sbjct: 61 HIPVMVNEVLHYLEPSPGKIFVDMTFGAGGHSMKILESSPNIKIFALDRDPIAHQFALKL 120 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 Y EQ FS+L + V DG +FD G SSMQ+D G+RGFS K GP Sbjct: 121 SEKYPEQIIPLLGRFSELPQLLCKYKVNVNSIDGFLFDFGCSSMQLDIGERGFSLSKDGP 180 Query: 133 LDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQT 187 LDMRM +A++V+ + +DL IL I G EK A +IA AI++ R + +T Sbjct: 181 LDMRMDGFRYPQEPTAAEVLKEITEEDLAFILKIYGNEKYAKKIARAIIETRYTFRNLKT 240 Query: 188 TQDLSSLIQKTVYFSK----NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 TQ+L+ LI+ + + H AT++FQALRIFVNNE+ E+ G+ A LK G Sbjct: 241 TQELAQLIESVISEKRFDQLGRFTHCATKTFQALRIFVNNELNEINYGIIIAGFYLKTNG 300 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP-------------SNAHPAVFQSITK 290 LI +SFHSLED +VK+ ++ + +A + + + ++ + K Sbjct: 301 RLITISFHSLEDTIVKRHMSANITETVANKIPLKFSDYGKHYTLTEMKALNRIPWKMLHK 360 Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMRTV 318 V+ PT+E++ N RSRSAK RA + + Sbjct: 361 HVITPTEEEINKNPRSRSAKFRAITKVI 388 >gi|78188031|ref|YP_378369.1| methyltransferase [Chlorobium chlorochromatii CaD3] gi|88909192|sp|Q3ANW1|RSMH_CHLCH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|78170230|gb|ABB27326.1| methyltransferase [Chlorobium chlorochromatii CaD3] Length = 328 Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats. Identities = 105/330 (31%), Positives = 178/330 (53%), Gaps = 22/330 (6%) Query: 12 AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--------SNVIA 63 A+H T H PVL +V+A L + +D T G G +S + + S +I Sbjct: 2 ALHDTY--HDPVLAAEVVATL-VQRSGIYVDGTLGGGSHSLALLQALQAQGLLESSLLIG 58 Query: 64 LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD--------KGVDGVVFDLGVSS 115 +D+D A++ E ++ ++ L + F + V V GV+ DLGVSS Sbjct: 59 IDQDSDALAMAAERLQAWQPYTRLLKGNFRDMASLVQQLCDAEGRACAVTGVLLDLGVSS 118 Query: 116 MQIDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAH 174 Q+D +RGFS+ +SGPLDMRM + ++A++++N A+ +L RI GEE ++ +A Sbjct: 119 FQLDTAERGFSYMRSGPLDMRMDNTAPLTAAELINHADEAELARIFYHYGEEPRSRALAR 178 Query: 175 AIVKRRQS-APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLR 233 A+V++R+ F TT++L++L+++ + + I +R FQALRI VN+E+ L + L Sbjct: 179 AVVQQREKMGNFTTTEELAALVRRLTHGGEKAVIKTLSRLFQALRIAVNDELGALHEVLE 238 Query: 234 SAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKV 292 A + L G L V+S+HSLEDR+VK FF + + + + +TK+ Sbjct: 239 GALELLDGNGRLAVMSYHSLEDRVVKHFFTHHAQCDWGPKGVALREPLSQGALTIVTKRP 298 Query: 293 VVPTQEDVAFNRRSRSAKLRAGMRTVERSI 322 ++ + +++ N R+RSAKLR + ++I Sbjct: 299 MLASADEIERNPRARSAKLRVAAKNQPKTI 328 >gi|41396357|gb|AAS04222.1| hypothetical protein MAP_1905c [Mycobacterium avium subsp. paratuberculosis K-10] Length = 386 Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats. Identities = 121/319 (37%), Positives = 181/319 (56%), Gaps = 18/319 (5%) Query: 20 HVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69 HVPVLLE+ + LL PA G V+LDAT GAGG++ F +IALDRDP Sbjct: 61 HVPVLLERCVELLTPALTRRHPDGSGAVLLDATLGAGGHAERFLADLPGLRLIALDRDPS 120 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSSMQIDCGDR 123 A+ +E + + ++ +L + + + + G VDG++FDLGVSSMQ+D +R Sbjct: 121 ALEIARERLARFADRITLVHMRYDGIAAALTESGYAATESVDGILFDLGVSSMQLDRPER 180 Query: 124 GFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GF++ + PLDMRM S ++A+D++N + +L IL GEE+ A RIA IV+RR Sbjct: 181 GFAYAQDAPLDMRMDPGSPLTAADILNTYDEAELADILHRYGEERFARRIAAQIVRRRAK 240 Query: 183 APFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 PF +T DL SL+ + + ++ HPA R+FQALRI VN+E++ L + L +A AL Sbjct: 241 EPFTSTADLVSLLYQAIPAPARRTGGHPAKRTFQALRIAVNDELDTLRRALPAALDALAV 300 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 G ++V+++ SLEDR+VK+ FA V + H F+++T ++ Sbjct: 301 DGRIVVLAYQSLEDRIVKRLFAQAVASRTPVDLPVELPGHEPRFRALTHGAGRADAAEIE 360 Query: 302 FNRRSRSAKLRAGMRTVER 320 N RS + +LRA RT Sbjct: 361 RNPRSAAVRLRALQRTQAP 379 >gi|281212537|gb|EFA86697.1| hypothetical protein PPL_00499 [Polysphondylium pallidum PN500] Length = 919 Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats. Identities = 115/317 (36%), Positives = 173/317 (54%), Gaps = 28/317 (8%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H PVL +VI L PG +D TFG GG++ + VIA DRDP + Sbjct: 606 HKPVLFREVIDRLRLKPGSCYIDCTFGLGGHTTGILDRQPDCYVIAFDRDPHVFELTKHL 665 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKG-----VDGVVFDLGVSSMQIDCGDRGFSFQKS-- 130 + YK++ FS++ + + G +DG++FD GVSS+Q+D +RGFSF+K Sbjct: 666 RQKYKDRLITIHGEFSRMSSLLAENGLSDLPIDGILFDFGVSSLQLDDPERGFSFRKDLY 725 Query: 131 GPLDMRM---SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 GPLDMRM S +SA D+VN ++K L I+ GEE+ +IA IV RR P +T Sbjct: 726 GPLDMRMNKDDSSTLSAFDIVNTFSIKRLRDIMYFYGEERHTKKIAEEIVLRRSIEPIRT 785 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T +L ++I+K + + N+ +R F+ALR++VN+E +E+ +GL AEK L+ G L+ Sbjct: 786 TNELVAIIEKCIPYPAANK--SISRIFRALRMYVNSETQEVKKGLLEAEKVLQPNGELVA 843 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +SFHS+EDR+VKKFF SR + V +++ +N RS+ Sbjct: 844 ISFHSIEDRIVKKFFQSRKNQSFVFPD--------------GDDPVYAAPDELEWNPRSK 889 Query: 308 SAKLRAGMRTVERSIED 324 A LR+ RT + + + Sbjct: 890 PAILRSAQRTKSKPLAN 906 >gi|145296128|ref|YP_001138949.1| S-adenosyl-methyltransferase MraW [Corynebacterium glutamicum R] gi|263447419|sp|A4QFN1|RSMH_CORGB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|140846048|dbj|BAF55047.1| hypothetical protein [Corynebacterium glutamicum R] Length = 337 Score = 324 bits (830), Expect = 1e-86, Method: Composition-based stats. Identities = 108/324 (33%), Positives = 170/324 (52%), Gaps = 20/324 (6%) Query: 20 HVPVLLEKVIALLNPA-----PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVS 72 HVPV+ +++ AL+ VI+DAT GAGG++ F +I LDRD A+ Sbjct: 12 HVPVMRDRMAALIAENVEALGENAVIVDATLGAGGHAEFFLNTFPKARLIGLDRDQNALR 71 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVP-----------DKGVDGVVFDLGVSSMQIDCG 121 + + + E+F Q F L++ + + G+ G +FDLGVSSMQ+D Sbjct: 72 DARARLAPFGERFIGVQTRFDGLREVLESVEGDIIDLAREHGIAGALFDLGVSSMQLDQV 131 Query: 122 DRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGF+++ PLDMRM GI+A+D++N + D+ RIL G+E+ A +IA A++K R Sbjct: 132 ERGFAYRTDAPLDMRMDATQGITAADILNTYSHGDIARILKTYGDERFAGKIASAVLKER 191 Query: 181 QSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 + PF T+ L L+ + + + HPA R+FQALR+ VNNE++ L L AL Sbjct: 192 EKEPFTTSARLVELLYDAIPAATRRTGGHPAKRTFQALRVEVNNELDSLKNVLPQITDAL 251 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 GG + +S+ S ED+LVKKFF + + F+ +T+ ++ + Sbjct: 252 NVGGRAVFMSYQSHEDKLVKKFFTDLTTSKTPPGLPVDLPGTAPQFKQVTRGAETASEAE 311 Query: 300 VAFNRRSRSAKLRAGMRTVERSIE 323 + N R+ K+RA R S + Sbjct: 312 IEENPRAAPVKVRAIERIANNSGD 335 >gi|300702954|ref|YP_003744556.1| s-adenosyl-dependent methyl transferase [Ralstonia solanacearum CFBP2957] gi|299070617|emb|CBJ41912.1| S-adenosyl-dependent methyl transferase [Ralstonia solanacearum CFBP2957] Length = 319 Score = 324 bits (830), Expect = 1e-86, Method: Composition-based stats. Identities = 112/314 (35%), Positives = 175/314 (55%), Gaps = 23/314 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VL ++ + L + +D TFG GG+SR + G +IA D+DP A++ Sbjct: 11 HQTVLRDEAVDALLWRDDGIYIDGTFGRGGHSRLLLERLGPGGRLIAFDKDPAAITEAG- 69 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +F++ +F+ L + +G V GV+ DLG+SS QID G RGFSF+ GPL Sbjct: 70 --TVEDARFAIEHDSFAHLDAALDARGIGRVAGVLLDLGISSPQIDEGARGFSFRMDGPL 127 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS----APFQTT 188 DMRM + GI+A+ + +A+ +D+ R++ GEE+ A +IA AIV RR P T Sbjct: 128 DMRMDTTRGITAAQWLAEADERDIARVIRDYGEERFAVQIAKAIVARRSESGTRGPLDRT 187 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L++L+ + V + PATR+FQALRI VN E+ +L GL++A + L+ GG L+V+ Sbjct: 188 SELAALVAQAVKT-REKGQDPATRTFQALRIHVNQELADLETGLKAAFERLEQGGRLVVI 246 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPS------NAHPAVFQSITKKVVVPTQEDVAF 302 SFHSLEDR+VK+F + + + + + + + V P++ +V+ Sbjct: 247 SFHSLEDRIVKRFMQALARPEQSAAPEMRRAPLRAHELPAPQLRLLGR--VRPSEAEVSA 304 Query: 303 NRRSRSAKLRAGMR 316 N R+RSA +R R Sbjct: 305 NPRARSAIMRVAER 318 >gi|213647633|ref|ZP_03377686.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 293 Score = 324 bits (830), Expect = 1e-86, Method: Composition-based stats. Identities = 109/275 (39%), Positives = 161/275 (58%), Gaps = 12/275 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ Q Sbjct: 6 KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAQ 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +FS+ FS L DYV ++ +DG++ DLGVSS Q+D +RGFSF + G Sbjct: 66 TI---NDPRFSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFMRDG 122 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + G SA++ + A D+ +L GEE+ A RIAHAIV+R + P T++ Sbjct: 123 PLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIAHAIVERNREQPMTRTKE 182 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ Q L+S+ L +GG L ++SF Sbjct: 183 LAEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLASGGRLSIISF 241 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF 285 HSLEDR+VK+F +S + + A Sbjct: 242 HSLEDRIVKRFMREQSRGPQVPAGLPMTEAQLKKL 276 >gi|157112116|ref|XP_001657398.1| s-adenosyl-methyltransferase mraw [Aedes aegypti] gi|108878145|gb|EAT42370.1| s-adenosyl-methyltransferase mraw [Aedes aegypti] Length = 357 Score = 324 bits (830), Expect = 1e-86, Method: Composition-based stats. Identities = 128/330 (38%), Positives = 180/330 (54%), Gaps = 31/330 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 HVPV+ + I L P ++ LD TFGAGG+++ K+ N +IALDRDP A Sbjct: 28 HVPVMATETIKFLKPQDNELFLDMTFGAGGHTKEILKVAPNAKIIALDRDPTAHDMALAM 87 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + Y Q FS+L + + V DG++FD G SSMQ D G RGFS K+GP Sbjct: 88 AKKYPGQIFPILGRFSELPEQLAKINVNQQSIDGIIFDFGCSSMQFDEGSRGFSISKNGP 147 Query: 133 LDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR-QSAPFQT 187 LDMRM SA++++ + + DL RIL I GEEKQA +IA AIV+ R +T Sbjct: 148 LDMRMDQDRFPDTPSAAEILAKIDEVDLARILKIYGEEKQAKKIARAIVETRYSIKKIET 207 Query: 188 TQDLSSLIQKTVYFSK------NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 T++L+ ++Q + HPAT++FQALRIFVNNE+ E+ G+ A++ LK Sbjct: 208 TKELADIVQSCLGSGSFRLDKLQRPSHPATKTFQALRIFVNNELNEINYGMILAQRYLKI 267 Query: 242 GGLLIVVSFHSLEDRLVKKFFA-------------SRSGKVMAVRHMIPSNAHPAVFQSI 288 GG +I ++FHSLED +VK+ ++ H + N + + Sbjct: 268 GGKMIAITFHSLEDTIVKRHVMGNVLNDMANTLPLKYCSHTISYEHDVMENVMKTSWHQM 327 Query: 289 TKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318 TK VV+P ++V N RSRSAKLRA +R Sbjct: 328 TKHVVLPGDDEVEQNPRSRSAKLRAVVRVA 357 >gi|300690333|ref|YP_003751328.1| S-adenosyl-dependent methyl transferase [Ralstonia solanacearum PSI07] gi|299077393|emb|CBJ50018.1| S-adenosyl-dependent methyl transferase [Ralstonia solanacearum PSI07] Length = 319 Score = 324 bits (830), Expect = 1e-86, Method: Composition-based stats. Identities = 116/323 (35%), Positives = 179/323 (55%), Gaps = 23/323 (7%) Query: 11 SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRD 67 + +T H VL ++ + L + +D TFG GG+SR + G +IA D+D Sbjct: 2 TTQANTGLRHQTVLRDEAVDALLWRDDGIYIDGTFGRGGHSRLILERLGPGGRLIAFDKD 61 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRG 124 P A++ +F++ +F+ L + +G V GV+ DLG+SS QID G RG Sbjct: 62 PAAITEAG---TVEDARFAIEHDSFAHLDAALDARGIGRVAGVLLDLGISSPQIDEGARG 118 Query: 125 FSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS- 182 FSF+ GPLDMRM + GI+A+ + +A+ +D+ R++ GEE+ A +IA AIV RR Sbjct: 119 FSFRMDGPLDMRMDTTRGITAAQWLAEADARDIARVIRDYGEERFAVQIAKAIVARRSES 178 Query: 183 ---APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 P T +L++L+ + V + PATR+FQALRI VN E+ +L GL++A + L Sbjct: 179 GTRGPLDRTSELAALVAQAVKT-REKGQDPATRTFQALRIHVNQELADLETGLKAAFERL 237 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRS---GKVMAVRHMIPSNAHP---AVFQSITKKVV 293 + GG L+V+SFHSLEDR+VK+F + + P AH + + + V Sbjct: 238 EQGGRLVVISFHSLEDRIVKRFMQALARPEQSTAPEMRRAPLRAHELPAPQLRLLGR--V 295 Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316 P++ +V+ N R+RSA +R R Sbjct: 296 RPSEAEVSANPRARSAIMRVAER 318 >gi|289740101|gb|ADD18798.1| putative SAM-dependent methyltransferases [Glossina morsitans morsitans] Length = 381 Score = 324 bits (830), Expect = 2e-86, Method: Composition-based stats. Identities = 122/330 (36%), Positives = 179/330 (54%), Gaps = 33/330 (10%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77 H PVL + I LNP P K+ +D TFGAGG+ + V ALDRDP A Q+ Sbjct: 50 HTPVLCAEAINYLNPGPQKIYIDMTFGAGGHCKKLLDSCKDIKVYALDRDPVAYELAQQM 109 Query: 78 MRDYKEQFSLFQATFSQLQDYVPD-----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 ++Y+ + + FS L + + VDG++FD G SSMQ + +RGFS K+GP Sbjct: 110 TKEYEGRLTPLLGRFSDLPHLLKEQNIVRHSVDGILFDFGCSSMQFEEPERGFSVSKNGP 169 Query: 133 LDMRMSC------SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APF 185 LDMRM C ++A+DV+ +A DL +IL I GEEK A +IA AIV R + P Sbjct: 170 LDMRMDCAPGMNNDQVTAADVLARAEEPDLVKILRIYGEEKAAKKIARAIVDARSALHPI 229 Query: 186 QTTQDLSSLIQKTVYFSK------NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 +TT+ L+ L+ ++ + H AT++FQALRIFVNNE+ E+ G+ A L Sbjct: 230 KTTKQLADLVASCLHETPFRLDKLQRPTHVATKTFQALRIFVNNELNEINYGMVLANAYL 289 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-------------FQ 286 + G L+ ++FHSLED +VK+ +A + + V ++ Sbjct: 290 RLQGRLVAITFHSLEDTIVKRHLYGNVIDGLANPVPLKYCGYDVVHDEETMQSITLSNWK 349 Query: 287 SITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 + K V++P +E++ N RSRSAKLRA ++ Sbjct: 350 PLHKHVILPGEEEIKHNSRSRSAKLRAAVK 379 >gi|300088323|ref|YP_003758845.1| S-adenosyl-methyltransferase MraW [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528056|gb|ADJ26524.1| S-adenosyl-methyltransferase MraW [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 356 Score = 324 bits (830), Expect = 2e-86, Method: Composition-based stats. Identities = 111/300 (37%), Positives = 171/300 (57%), Gaps = 15/300 (5%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69 + HT DH PV+L + + L PG +D T GAGG++R+ M G ++ LD DP Sbjct: 1 MSHT--DHTPVMLRESLQALAVGPGGRYVDGTTGAGGHARAILDMSAPGGQLLGLDADPE 58 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFS 126 ++ E + Y+ F L A FS++++ V G++ DLG++SMQ+ RGFS Sbjct: 59 SLKIASENLSGYEGSFRLVNANFSRMEEICRQYDFYPVHGIILDLGLASMQLTETGRGFS 118 Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 FQ PLDMR S ++A+++VN + ++ IL GEE+++ IA IV+ R P Sbjct: 119 FQYDAPLDMRFSPDQKLTAAEIVNTWSETEIADILYRYGEERRSRAIARRIVESR---PL 175 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 +TT L++L+ KT+ ++ IHPATR+FQALRI VN+E+ L L A + L G L Sbjct: 176 KTTTQLANLVAKTI--GRSGDIHPATRTFQALRIAVNDELARLEDTLDQAVRLLGYSGRL 233 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNR 304 +V+++HSLEDR+VK+FF + + + H A + + +KV+ PT E+V N Sbjct: 234 VVIAYHSLEDRIVKQFFQREATDCVCPVELPECRCGHVARLRVLNRKVMTPTDEEVRANP 293 >gi|284991692|ref|YP_003410246.1| S-adenosyl-methyltransferase MraW [Geodermatophilus obscurus DSM 43160] gi|284064937|gb|ADB75875.1| S-adenosyl-methyltransferase MraW [Geodermatophilus obscurus DSM 43160] Length = 330 Score = 324 bits (830), Expect = 2e-86, Method: Composition-based stats. Identities = 117/301 (38%), Positives = 173/301 (57%), Gaps = 12/301 (3%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 HVPVLL++V LL PA G V++DAT G G+S + + ++ LDRDP A + Sbjct: 17 HVPVLLDRVTELLAPACAADGAVLVDATLGLAGHSLALLRAHPGLRLVGLDRDPDARAEA 76 Query: 75 QETMRDYK--EQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK 129 + D ++ ++ A F +L + G V V+FDLGVSS+Q+D DRGFS+ Sbjct: 77 TRRLTDAGVADRATVVPAVFDELPGVLDRLGLTEVQAVLFDLGVSSLQLDRPDRGFSYAA 136 Query: 130 SGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM S +A+DVVN L R+L + GEE+ A+RIA AI + R+ APF T Sbjct: 137 DAPLDMRMDPSAPRTAADVVNTYPTDRLARVLRVYGEERFATRIAQAITRERERAPFTHT 196 Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 + L+ L++ ++ + + HPA R+FQALRI VN+E+ L + L +A AL GG + V Sbjct: 197 ERLAHLVRASIPAATRRTGGHPAKRTFQALRIEVNDELGVLERALPAALDALTVGGRIAV 256 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 ++FHSLEDR+VK+ A+ + +P + +T+ P++ +VA N RS Sbjct: 257 ITFHSLEDRIVKQTLAAGAVDRTPPGLPVPLPEMGPTLRLLTRGGEAPSEAEVAANPRSA 316 Query: 308 S 308 S Sbjct: 317 S 317 >gi|83595986|gb|ABC25345.1| S-adenosyl-methyltransferase [uncultured marine bacterium Ant29B7] Length = 304 Score = 324 bits (830), Expect = 2e-86, Method: Composition-based stats. Identities = 107/311 (34%), Positives = 154/311 (49%), Gaps = 17/311 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H PVLL+ I L+ P + +DATFG GG+SR+ + D+DP Sbjct: 4 HDPVLLDACIQHLHIQPHGIYVDATFGGGGHSRAILDQLGPEGKLFGFDQDPDTSKNAPN 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++F L F + + V DG++ DLGVSS Q+D G RGFSF++ L Sbjct: 64 -----DDRFQLLPFNFEHITRILRLHKVTAVDGILADLGVSSHQLDEGSRGFSFRQHAEL 118 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ SG A + + + L + L G+ QA R+A AI++ R + T+DL Sbjct: 119 DMRMNPQSGPGAREWLETVTWEQLAQTLREFGDVHQAGRVATAIIQARDAGQMTWTEDLY 178 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +Q + + FQA+RI VN E+ L L LK GG +V+S+HS Sbjct: 179 ECLQPMCKGPR--GKKLPAQVFQAIRIAVNRELAVLDSLLVDGANLLKTGGRYVVMSYHS 236 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR VK+FF + A R +F IT+K +V +QE++A N R+RSAKLR Sbjct: 237 LEDRRVKRFFKEGVLEGEAARDD--HGRRYEIFDRITRKPLVASQEEIAINPRARSAKLR 294 Query: 313 AGMRTVERSIE 323 + E + Sbjct: 295 VVEKI-EPTWG 304 >gi|269219541|ref|ZP_06163395.1| S-adenosyl-methyltransferase MraW [Actinomyces sp. oral taxon 848 str. F0332] gi|269210783|gb|EEZ77123.1| S-adenosyl-methyltransferase MraW [Actinomyces sp. oral taxon 848 str. F0332] Length = 335 Score = 324 bits (830), Expect = 2e-86, Method: Composition-based stats. Identities = 112/314 (35%), Positives = 175/314 (55%), Gaps = 11/314 (3%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCG 74 HVPVLLE+ + LL PA V++DAT G GG+S +F + +N+ + +DRDP A+ Sbjct: 20 HVPVLLEECVNLLGPALTAEAPVMIDATLGMGGHSFAFLERFANLTVVGIDRDPEAIELA 79 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 E + + ++F +AT+ + D + G D V+ DLGVSS+Q+D RGFS+ Sbjct: 80 GERLARFGKRFVAVRATYDDVSDVAAEYGRAGRADAVLMDLGVSSLQLDDEGRGFSYSGD 139 Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 GPLDMRM +G +A+DV+ A+ +LTRIL GEE+ ASRIA I+ R + P + T Sbjct: 140 GPLDMRMDKTGGPTAADVLASADKAELTRILREYGEERFASRIAARILAARAAEPIERTG 199 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ +++ + ++ +P R+FQALRI VN+E+ L + + A +A+ GG + V Sbjct: 200 QLADIVRDAIPAPARRTGGNPCKRTFQALRIAVNDELALLRRAIPRAIEAIAVGGRIAVE 259 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 S+ SLED++VK+ A + + + + +T+ V ++ N RS S Sbjct: 260 SYQSLEDKIVKREMAKGATSSTPAGLPVELDDRAPYLRLLTRGAVKADAAELQANPRSAS 319 Query: 309 AKLRAGMRTVERSI 322 +LRA R E Sbjct: 320 VRLRAAERLRETPH 333 >gi|317009278|gb|ADU79858.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori India7] Length = 308 Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats. Identities = 114/311 (36%), Positives = 177/311 (56%), Gaps = 14/311 (4%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFA 70 + G H VLL++V+ P V++D T G GG+S++ ++ I +D+D FA Sbjct: 1 MQEIGGLHQSVLLQEVLQAFTPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFA 60 Query: 71 VSCGQETMRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSF 127 +E ++ ++ +++L F++ ++ + + GV+ DLGVSS+Q+D +RGF+F Sbjct: 61 QEIAKERLKAFEGRYNLLSGGFAKRFKESLETHNKEIKGVLVDLGVSSLQLDDDNRGFNF 120 Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 S LDMRM S ++A V+N +V L +I GE K+ +IAH I +RR PF+ Sbjct: 121 -HSHTLDMRMDLESDLNAQKVINSYSVVALEKIFRDYGEIKEYKKIAHKIAERRAKKPFK 179 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 +DLS + FSKN +IHPAT FQA+RI VN+E+EEL + L+ A G +L Sbjct: 180 DAKDLSDFLSS---FSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCARNL--KGAILC 234 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 V+SFHSLED+LVK F + + + A+ + +TKK + P+ E++ NR Sbjct: 235 VISFHSLEDKLVKNAFKDYAKNCTCDPLSFKCACSNNHALGEILTKKPITPSPEEIKNNR 294 Query: 305 RSRSAKLRAGM 315 RSRSAK+R Sbjct: 295 RSRSAKMRVFQ 305 >gi|261855063|ref|YP_003262346.1| S-adenosyl-methyltransferase MraW [Halothiobacillus neapolitanus c2] gi|261835532|gb|ACX95299.1| S-adenosyl-methyltransferase MraW [Halothiobacillus neapolitanus c2] Length = 317 Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats. Identities = 116/323 (35%), Positives = 169/323 (52%), Gaps = 14/323 (4%) Query: 4 KSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSN 60 + +S+ H VLL + + L V LDATFG GG+S + Sbjct: 1 MNALAVSTQEKSEALTHETVLLNEAVEALAVRADGVYLDATFGRGGHSAAILAKLNNHGR 60 Query: 61 VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSM 116 + A DRD A+ E + +F + A FS ++ G VDGV+FDLGVSS Sbjct: 61 LFATDRDLRAL-AAGEALASKDARFQIHHAAFSTAAQWLASMGLQGKVDGVLFDLGVSSP 119 Query: 117 QIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175 QID +RGFSFQ++GPLDMRM+ +G +A++ + +A +++ +L LG+EK + RIA Sbjct: 120 QIDEAERGFSFQQNGPLDMRMNQHAGETAAEWLAEAEEEEIANVLYRLGDEKFSRRIARR 179 Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 IV+ R + P TT DL I + ++ R HPATRSFQA+R+ +N E++E++ L Sbjct: 180 IVETRAAQPLATTFDLVRCIVEATP-RRDPRKHPATRSFQAIRLHINRELDEISAALSQV 238 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295 L GG L+V+SFHSLEDR+VK F S + A + + Sbjct: 239 VDLLSIGGRLVVISFHSLEDRIVKNFIRDES---TTDKDFFGQPVGTARLSRV-GGSIRA 294 Query: 296 TQEDVAFNRRSRSAKLRAGMRTV 318 + E++ N RSRSA +R R Sbjct: 295 SAEEIVRNPRSRSAIMRVAERVA 317 >gi|299065600|emb|CBJ36772.1| S-adenosyl-dependent methyl transferase [Ralstonia solanacearum CMR15] Length = 319 Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats. Identities = 111/314 (35%), Positives = 177/314 (56%), Gaps = 23/314 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H VL ++ + L + +D TFG GG+SR + G +IA D+DP A++ Sbjct: 11 HQTVLRDEAVDALLWRDDGIYIDGTFGRGGHSRLILERLGSGGRLIAFDKDPAAITEAG- 69 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +F++ +F+Q+ + +G V GV+ DLG+SS QID G RGFSF+ GPL Sbjct: 70 --TVEDARFAIEHDSFAQMGSALDARGIGRVAGVLLDLGISSPQIDEGARGFSFRMDGPL 127 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS----APFQTT 188 DMRM + GI+A+ + +A+ +D+ R++ GEE+ A +IA AIV RR+ P T Sbjct: 128 DMRMDTTRGITAAQWLAEADERDIARVIRDYGEERFAVQIAKAIVARRRESGTRGPLDRT 187 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L++L+ + V + PATR+FQALRI +N E+ +L GL++A + L+ GG L+V+ Sbjct: 188 SELAALVAQAVKT-REKGQDPATRTFQALRIHINQELADLETGLKAAFERLEQGGRLVVI 246 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPS------NAHPAVFQSITKKVVVPTQEDVAF 302 SFHSLEDR+VK+F + + + + + + + V P++ +V+ Sbjct: 247 SFHSLEDRIVKRFMQALARPEQSAAPEMRRAPLRAHELPAPQLRLLGR--VRPSEAEVSA 304 Query: 303 NRRSRSAKLRAGMR 316 N R+RSA +R R Sbjct: 305 NPRARSAIMRVAER 318 >gi|298491041|ref|YP_003721218.1| S-adenosyl-methyltransferase MraW ['Nostoc azollae' 0708] gi|298232959|gb|ADI64095.1| S-adenosyl-methyltransferase MraW ['Nostoc azollae' 0708] Length = 301 Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats. Identities = 109/308 (35%), Positives = 170/308 (55%), Gaps = 26/308 (8%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFA 70 ++ HVPVL ++VI L +P LD T G GG+SR + +V A+D+D A Sbjct: 11 LNEIAFSHVPVLSQQVIGGLVVSPRGNYLDLTVGGGGHSRLILETAEDVKVTAVDQDEDA 70 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + + ++ ++ + + F+ P G++ DLGVSS +D +RGFSF+ + Sbjct: 71 LKAAKANLAEFGDRVNFIHSNFANYD--FPPNTYHGILADLGVSSYHLDNPERGFSFRNT 128 Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM+ ++A D++N + +L I GEE+ + RIA IV++R PF TT Sbjct: 129 ANLDMRMNQQQFLTAGDIINNWDEGELADIFFKYGEERLSRRIARRIVEKR---PFHTTT 185 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+++I +V + R+HPATR FQALRI VN+E++ L + A +L GG + ++ Sbjct: 186 ELANVIAYSVPPKYRYGRLHPATRVFQALRIVVNDELKVLETLIDKAPHSLVPGGRIAII 245 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDRLVK + S + Q +TKK ++ T+ ++ N RSRS Sbjct: 246 SFHSLEDRLVKHGLRNLS-----------------LLQVLTKKPILGTESEITENLRSRS 288 Query: 309 AKLRAGMR 316 AKLR + Sbjct: 289 AKLRIAEK 296 >gi|224436850|ref|ZP_03657839.1| S-adenosyl-methyltransferase MraW [Helicobacter cinaedi CCUG 18818] gi|313143328|ref|ZP_07805521.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Helicobacter cinaedi CCUG 18818] gi|313128359|gb|EFR45976.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Helicobacter cinaedi CCUG 18818] Length = 311 Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats. Identities = 107/309 (34%), Positives = 169/309 (54%), Gaps = 16/309 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQE 76 H VL +V+ LN G V +D T G GG++ S + ++ A DRD A+S ++ Sbjct: 2 KHFSVLKNEVLEALNLESGAV-IDCTLGYGGHTLSLLEQNPNIHIYAFDRDESALSLAKQ 60 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + Y + + F+ D + ++ V G++ D+GVSSMQ+D RGFSF + L Sbjct: 61 RLAPYASRLHIQHCAFANALDSLGNEQLARVRGILADIGVSSMQLDDKHRGFSFTSNN-L 119 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM ++A+ V+N + L I I GE +Q+ ++ IV R+ PF++ +LS Sbjct: 120 DMRMDSTQNLNAAKVINTYSAMRLEEIFRIYGEIRQSKKLTELIVSTREKKPFESALELS 179 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG----GLLIVV 248 LI++ +F + IHPAT +FQALRI VN E+E+L L+S E A G + ++ Sbjct: 180 ELIER--HFPRIGGIHPATLAFQALRIEVNGELEQLQTLLQSIESAFINGVLYDCKVAII 237 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 SFHSLEDR++K+ F + + + A+ +TKK ++P++ ++ N+RS Sbjct: 238 SFHSLEDRIIKQTFKQWAKSCKCGENALKCECGNNNALGSILTKKPILPSETEIIQNKRS 297 Query: 307 RSAKLRAGM 315 RSAKLR Sbjct: 298 RSAKLRIFQ 306 >gi|297181413|gb|ADI17602.1| predicted s-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [uncultured delta proteobacterium HF0130_19C20] Length = 314 Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats. Identities = 111/307 (36%), Positives = 170/307 (55%), Gaps = 10/307 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H+ VL ++V+ P + ILD T G GG+S + + +DRD AV + Sbjct: 7 HISVLQKEVVD-FAPPSPQTILDCTLGGGGHSYKLLEKYPKASLYGIDRDSIAVKAADQR 65 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++++++Q L A+FS+L + G D ++ D+GVSS QI C +RGFSF GPLD Sbjct: 66 LQNFRKQTCLIHASFSELPAMIDKWGNPIFDYIIADIGVSSEQISCPERGFSFLNEGPLD 125 Query: 135 MRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 MRM ++A ++VN AN +L IL GEE+ A RI I+ R+ F+TT +L+ Sbjct: 126 MRMDPERQHLTAENIVNNANEHELVNILRNFGEERFARRIVSTILVERRKKKFRTTLELA 185 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 L++ + + +PAT++FQALRI VNNE+ EL L + K LK G + V+SFH Sbjct: 186 ELVKNVIPNKMRKRGFNPATKTFQALRIAVNNELLELTTLLENVPKFLKNSGRMAVISFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK+ F + + + + +T++ V ++E++A N RSRSA Sbjct: 246 SLEDRIVKQKFRKWENPCVCPTDLPYCVCGGIPLGKVLTRRQVKASKEEIAKNPRSRSAH 305 Query: 311 LRAGMRT 317 LR + Sbjct: 306 LRVFTKI 312 >gi|294338811|emb|CAZ87145.1| S-adenosyl-dependent methyl transferase MraW [Thiomonas sp. 3As] Length = 317 Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats. Identities = 118/318 (37%), Positives = 173/318 (54%), Gaps = 14/318 (4%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDR 66 ++ + H VLL + + L P V LDATFG GG+SR + +IA+DR Sbjct: 4 TTPMPSAETAHRTVLLHEAVDQLITNPDGVYLDATFGRGGHSREILRRLSPAGRLIAIDR 63 Query: 67 DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDR 123 DP A+ + + +F + A FS+ + ++GV DG++FDLGVSS Q+D +R Sbjct: 64 DPQAIEAAAQI---HDARFVIKHAPFSEFARVLHEQGVAQADGLLFDLGVSSPQLDQPER 120 Query: 124 GFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR-Q 181 GFSF+ GPLDMRM SG + ++ + A+V ++ +L G+E+ A +IA IV RR Sbjct: 121 GFSFRADGPLDMRMDNSSGQTVAEYLATASVDEIATVLRDYGDERAAVQIAKKIVARRDA 180 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 AP + +L++L+ V + + PATR+FQALRI VN E+ ++ L L+ Sbjct: 181 GAPLARSGELAALVASAVKSREPGQ-DPATRTFQALRIHVNAELAQIETALSQVLDCLRP 239 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV--VPTQED 299 GG L V+SFHSLED L+K+F + R A FQ K+VV P+ + Sbjct: 240 GGRLAVISFHSLEDALIKRFIHRHARAPAVDRRQPFVPGVSAEFQPQLKEVVRMRPSAAE 299 Query: 300 VAFNRRSRSAKLRAGMRT 317 ++ N RSRSA LR R Sbjct: 300 ISGNARSRSAMLRVAQRV 317 >gi|172040893|ref|YP_001800607.1| S-adenosyl-methyltransferase MraW [Corynebacterium urealyticum DSM 7109] gi|263446151|sp|B1VHD2|RSMH_CORU7 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|171852197|emb|CAQ05173.1| S-adenosyl-methyltransferase [Corynebacterium urealyticum DSM 7109] Length = 353 Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats. Identities = 110/355 (30%), Positives = 188/355 (52%), Gaps = 30/355 (8%) Query: 9 MSSAIHHTIGD--HVPVLLEKVIALLNP------APGK-VILDATFGAGGYSRSFCKMGS 59 M++ H HVPV+ ++++ L+ AP + +I+D T GAGG++ +F + Sbjct: 1 MAANTPHDPSSPGHVPVMRQRMVELVGIGVTAGSAPAQPIIVDGTLGAGGHTEAFLEAYP 60 Query: 60 N--VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP-------------DKGV 104 N VI LDRDP A++ + + + ++F +Q F + + + ++G+ Sbjct: 61 NAIVIGLDRDPNALAEARARLERFGQRFFSYQTRFDGIGEALEHFSEDPDFPVDIREQGI 120 Query: 105 DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGIL 163 G +FDLGVSSMQ+D DRGF+++ PLDMRM S ++A++++N +L RIL Sbjct: 121 SGFLFDLGVSSMQLDQEDRGFAYRVDAPLDMRMDPSSRLTAAEILNTYEHGELARILKRY 180 Query: 164 GEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVN 222 G+EK A +IA A+++ R+ PF+ + L L+ T+ + + HPA R+FQALRI VN Sbjct: 181 GDEKFAGKIASAVIREREKQPFENSARLVDLLYATIPAAARRTGGHPAKRTFQALRIEVN 240 Query: 223 NEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHP 282 E+E L + +A L+ G + +S+ SLED++VK+ + + Sbjct: 241 AELESLELVIPAAFSWLRVDGAGVFMSYQSLEDKIVKQQLKGMTESSTPPGLPVELPGTE 300 Query: 283 AVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDDSFVHLPRLPTLS 337 F+ +T+ +++++A N RS ++RA R + S PR P +S Sbjct: 301 PEFELLTRGAEKASEQEIAENSRSAPVRVRAARRIGAHA----SGAGGPRYPLVS 351 >gi|109947477|ref|YP_664705.1| S-adenosyl-methyltransferase MraW [Helicobacter acinonychis str. Sheeba] gi|122973304|sp|Q17XC0|RSMH_HELAH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|109714698|emb|CAJ99706.1| S-adenosyl-methyltransferase [Helicobacter acinonychis str. Sheeba] Length = 308 Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats. Identities = 111/311 (35%), Positives = 173/311 (55%), Gaps = 14/311 (4%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70 + H VLL++V+ P V +D T G GG+S++ + +I +D+D A Sbjct: 1 MQEIENLHKSVLLQEVLQAFAPLEKGVFIDCTLGLGGHSKALLSQKPHLKLIGIDKDKHA 60 Query: 71 VSCGQETMRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSF 127 +E ++ ++ + + F++ ++ + G + GV+ DLGVSS+Q+D +RGF+F Sbjct: 61 QEIAKERLKAFEGCYHILSGGFAKRFKEALETHGEQIKGVLVDLGVSSLQLDDDNRGFNF 120 Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 S LDMRM S ++A V+N + L +I G K+ +IAH IV+RR PF+ Sbjct: 121 -HSHALDMRMDLESELNAQKVINSYCIVALEKIFKDYGAIKEYKKIAHHIVERRAKKPFK 179 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 +DLS + SKN +IHPAT FQA+RI VN E+EEL + L+ A K G +L Sbjct: 180 DAKDLSDFLSS---LSKNKKIHPATLVFQAIRIEVNRELEELKEFLQDAMKL--KGAILC 234 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMA--VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 V+SFHSLED LVK F + + + + + + A+ + +TKK + P+ E++ NR Sbjct: 235 VISFHSLEDALVKNAFKNYAKNCICDALNFKCTCSNNHALGEILTKKPITPSLEEIKHNR 294 Query: 305 RSRSAKLRAGM 315 RSRSAK+R Sbjct: 295 RSRSAKMRVFQ 305 >gi|317014121|gb|ADU81557.1| 16S rRNA m(4)C1402 methyltranserfase [Helicobacter pylori Gambia94/24] Length = 308 Score = 323 bits (828), Expect = 2e-86, Method: Composition-based stats. Identities = 114/311 (36%), Positives = 174/311 (55%), Gaps = 14/311 (4%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70 + H VLL++V+ P V++D T G GG+S++ + +I +D+D FA Sbjct: 1 MQEIENLHQSVLLQEVLQAFAPLEEGVLIDCTLGLGGHSKAILSQKPHLKLIGIDKDKFA 60 Query: 71 VSCGQETMRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSF 127 +E ++ ++ ++ L F++ ++ + G + GV+ DLGVSS+Q+D +RGF+F Sbjct: 61 QEIAKERLKAFEGRYHLLSGGFAKRFKEALEIHGERIKGVLVDLGVSSLQLDDDNRGFNF 120 Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 S LDMRM S ++A V+N V L +I GE K+ +IAH IV+RR PF+ Sbjct: 121 -HSHALDMRMDLESELNAQKVINSYPVVALEKIFRDYGEIKEYKKIAHKIVERRAKKPFK 179 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 +DLS + SKN +IHPAT FQA+RI VN+E+EEL + L+ A G +L Sbjct: 180 DAKDLSEFLSS---LSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCARNL--KGAILC 234 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 V+SFHSLED LVK F + + + + A+ +TKK + P+ E++ NR Sbjct: 235 VISFHSLEDALVKNAFKDYAKNCICDPSSFKCACSNNHALGAILTKKPITPSPEEIKNNR 294 Query: 305 RSRSAKLRAGM 315 RSRSAK+R Sbjct: 295 RSRSAKMRVFQ 305 >gi|86606931|ref|YP_475694.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. JA-3-3Ab] gi|123505404|sp|Q2JSF0|RSMH_SYNJA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|86555473|gb|ABD00431.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. JA-3-3Ab] Length = 309 Score = 323 bits (828), Expect = 2e-86, Method: Composition-based stats. Identities = 125/313 (39%), Positives = 164/313 (52%), Gaps = 35/313 (11%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQET 77 H VL E V+A L P G LD T G GG+S + + G+ V+ LDRDP A+ Q Sbjct: 15 HHESVLTEAVVAYLQPQQGGAFLDVTLGGGGHSLALLQRGADRVVGLDRDPTALQAAQAR 74 Query: 78 MRD---YKEQFSLFQATFSQLQ--------DYVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126 + + L+ F+ + DG+V DLGVSS Q+DC +RGFS Sbjct: 75 LAAAGIPGNRLQLWHLNFADFDLQRHGFRDERGQGIPFDGIVADLGVSSPQLDCPERGFS 134 Query: 127 FQKSGPLDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 F+ GPLDMRM + +A+D VN+ V+DL I GEE+ A RIAH I + R P Sbjct: 135 FRAEGPLDMRMDPTADQETAADWVNRRPVEDLIDIFVRYGEERFARRIAHHIERSR---P 191 Query: 185 FQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 TT L+ ++ + V + + RIHPATR FQALRI VN E+E L L A LK GG Sbjct: 192 LFTTTQLAHVVWQAVPPAARRGRIHPATRIFQALRIAVNRELEALETLLAQAPNWLKPGG 251 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 L V+SFHSLEDRLVK F + +Q +T K + P++ + N Sbjct: 252 RLAVISFHSLEDRLVKWAFRTD-----------------PRWQVLTPKPLCPSELEQQRN 294 Query: 304 RRSRSAKLRAGMR 316 R+RSAKLR R Sbjct: 295 SRARSAKLRVAAR 307 >gi|313837465|gb|EFS75179.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL037PA2] gi|314971672|gb|EFT15770.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL037PA3] Length = 337 Score = 323 bits (828), Expect = 3e-86, Method: Composition-based stats. Identities = 112/321 (34%), Positives = 173/321 (53%), Gaps = 11/321 (3%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPG---KVILDATFGAGGYSRSFCKMGSN--VIA 63 M++ + HVPV+ +++ LL P +V +D T G GG++ + + ++ Sbjct: 3 MATDAIGSDAVHVPVMRARILDLLGPTLESGRRVHVDGTLGMGGHAEAVLTRFPDVQLVG 62 Query: 64 LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDC 120 +DRD A++ ++ + ++ L A +L + + D G VD V+ DLG+SS+QID Sbjct: 63 IDRDRQALTMAGARLKPFVDRVHLVHAVHDELPEVLDDLGLGRVDSVLLDLGLSSLQIDE 122 Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS+ PLDMRM S G +A+ V+N+++ DL RIL GEEK A RI AIV Sbjct: 123 VNRGFSYSVDSPLDMRMDQSRGRTAAQVLNESDPGDLVRILHEYGEEKFADRIVRAIVTE 182 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSKNNR--IHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 R P +T+ L +I + + + ++ HPA R+FQALRI VN E+E L+ L A Sbjct: 183 RDRQPIETSGRLVEIITRAIPVAVRHKRSGHPAKRTFQALRIAVNREMETLSAVLPRALD 242 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297 L GG + V+++HSLEDR VK+ F I + A F +T+ P Sbjct: 243 RLNVGGRIAVLAYHSLEDRPVKEVFREACDDTAPAGLPIVPESMAAKFSPVTRGAERPDA 302 Query: 298 EDVAFNRRSRSAKLRAGMRTV 318 ++++ N RS SA+LR R Sbjct: 303 DEMSANPRSASARLRVIERVR 323 >gi|309804817|ref|ZP_07698881.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LactinV 09V1-c] gi|309806276|ref|ZP_07700289.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LactinV 03V1-b] gi|308165927|gb|EFO68146.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LactinV 09V1-c] gi|308167260|gb|EFO69426.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LactinV 03V1-b] Length = 280 Score = 323 bits (828), Expect = 3e-86, Method: Composition-based stats. Identities = 97/256 (37%), Positives = 147/256 (57%), Gaps = 13/256 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76 H VLL + I LN V +DATFG GG++ K ++I D+D +A+ ++ Sbjct: 6 KHYSVLLHETIDNLNLKNDGVYVDATFGGGGHASYLLKQLSNGHLIGFDQDEYAIELAKK 65 Query: 77 TM-----RDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSF 127 + + K + SL F LQ + G+DG+ +DLGVSS Q D +RGFS+ Sbjct: 66 SFSEVLKANSKPKLSLVHDNFGNLQQNLAKLGFIDGIDGIYYDLGVSSPQFDQPERGFSY 125 Query: 128 QKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + + LDMRM + + A +VN + K+L+ IL G+EK A +IA IV +R P Sbjct: 126 RFNARLDMRMDQTKDLDAYKIVNTWSQKELSNILFKYGDEKYARQIAKNIVAKRAIKPIT 185 Query: 187 TTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT +L +I++ + F++ HPA +SFQA+RI VN+E+E L + L A + LK GG + Sbjct: 186 TTFELVDIIKEAIPAFARRTGGHPAKKSFQAIRIAVNDELEVLEKSLLDAIEILKPGGRI 245 Query: 246 IVVSFHSLEDRLVKKF 261 V++F SLED++VKK+ Sbjct: 246 CVITFQSLEDKIVKKY 261 >gi|241257348|ref|XP_002404552.1| SAM dependent methyltransferase, putative [Ixodes scapularis] gi|215496661|gb|EEC06301.1| SAM dependent methyltransferase, putative [Ixodes scapularis] Length = 292 Score = 323 bits (828), Expect = 3e-86, Method: Composition-based stats. Identities = 115/290 (39%), Positives = 171/290 (58%), Gaps = 13/290 (4%) Query: 37 GKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFS 93 V +D TFG GG+SR S +I +D+DP A++ QE + + ++ + F Sbjct: 6 DGVYVDCTFGRGGHSRLLLSHLSPQARLIVIDKDPQAIAVAQE-LAAQDSRVTVVHSGFG 64 Query: 94 QLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVN 149 L + + V GV+ DLG+SS QID +RGFSF + GPLDMRM SG ++A + Sbjct: 65 DLAQALDELEVGPLQGVMMDLGISSPQIDDAERGFSFMREGPLDMRMDTSGGLTAEQWLA 124 Query: 150 QANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHP 209 + +V+ L ++ GEE+ A +IA AIV RRQS P TT+DL+ L+ V ++ HP Sbjct: 125 EVSVEVLKEVIAEYGEERFAFQIAKAIVDRRQSRPLHTTRDLAELVAGVV-RTREKGQHP 183 Query: 210 ATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF--ASRSG 267 ATR+FQA+RI++N E+EELA L S L G L V++FHSLEDR+VK+F A+R Sbjct: 184 ATRTFQAIRIYLNRELEELAYALPSILSRLATRGRLAVIAFHSLEDRMVKQFMNAAARPA 243 Query: 268 KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 + + ++ + + QS+ + ++PT E+ + N R+RSA LR RT Sbjct: 244 QEQSRLPILEKDLPQPLVQSLGR--ILPTDEESSDNPRARSAVLRVVQRT 291 >gi|121998878|ref|YP_001003665.1| S-adenosyl-methyltransferase MraW [Halorhodospira halophila SL1] gi|263456068|sp|A1WYV1|RSMH_HALHL RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|121590283|gb|ABM62863.1| S-adenosyl-methyltransferase MraW [Halorhodospira halophila SL1] Length = 324 Score = 323 bits (828), Expect = 3e-86, Method: Composition-based stats. Identities = 117/316 (37%), Positives = 177/316 (56%), Gaps = 13/316 (4%) Query: 11 SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRD 67 + T H PVL +A L+ P +DAT+G GG++R + + DRD Sbjct: 10 AEQEPTATTHRPVLYGAALAALDVRPDGCYVDATYGRGGHARGILERLGPQGRLWVADRD 69 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDR 123 P A++ +ET+ D + ++ A ++L + ++G VDG++ DLG+SS Q+D DR Sbjct: 70 PEALAHARETLAD-DPRCTVLGAELAELPRLLAEQGLAAGVDGLLADLGISSPQVDNPDR 128 Query: 124 GFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GFSFQ+ GPLDMRM + G SA+ ++ + + +D+ +L LGEE+ A RIA AIV R + Sbjct: 129 GFSFQRDGPLDMRMDPTTGESAAALLERLSARDIAGVLRQLGEERHAGRIARAIVAARDA 188 Query: 183 A-PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 P +TT L+ L+++ V + R HPATR+FQALRI VN+E+ +L + L L Sbjct: 189 GDPPRTTLALARLVEQAVPRREPGR-HPATRTFQALRIAVNDELGQLDRFLEGVIDLLAP 247 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300 GG L V++FHSLEDR VK+F S + +P + + + + + +V Sbjct: 248 GGRLAVIAFHSLEDRRVKRFIRRASSVGDLPPSVPVPPAGCQPRLRPLGRD-LRADEGEV 306 Query: 301 AFNRRSRSAKLRAGMR 316 A N R+RSA LR R Sbjct: 307 AGNPRARSAVLRVAER 322 >gi|224050409|ref|XP_002191093.1| PREDICTED: similar to methyltransferase 5 domain containing 1 [Taeniopygia guttata] Length = 443 Score = 323 bits (828), Expect = 3e-86, Method: Composition-based stats. Identities = 133/335 (39%), Positives = 186/335 (55%), Gaps = 38/335 (11%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H+PV+LE+V+ L+P PG+ LD TFGAGG++ + + S+ V ALDRDP A Q+ Sbjct: 108 HIPVMLEEVVNCLSPQPGQRFLDMTFGAGGHTAALLERASDISVYALDRDPTAHRMAQQL 167 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + Y +Q FSQ + + GV DGV+ D G SSMQ+D +RGFS QK GP Sbjct: 168 AQAYPKQLQPLLGRFSQSEALLISSGVEPGSLDGVLLDAGCSSMQLDTPERGFSLQKDGP 227 Query: 133 LDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM + +A+DVVN + + L +L GEE+ A RIA AIV+ R P T Sbjct: 228 LDMRMDHDRCPAMATAADVVNALDQRALASVLSAYGEERHARRIAAAIVQARSIYPITRT 287 Query: 189 QDLSSLIQKTVYFSK--------NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 + L+S++ S +H AT++FQ LRIFVN+E+ EL GL++AEK L+ Sbjct: 288 RQLASIVAGAFPASALYARKDLLQRPVHVATKTFQGLRIFVNDELHELLIGLKTAEKFLR 347 Query: 241 AGGLLIVVSFHSLEDRLVKKFF-------ASRSGKVMAVRHMI------------PSNAH 281 GG L+ +SFHSLEDR++K+F G +R + P Sbjct: 348 PGGRLVALSFHSLEDRIIKRFLHGIDITEKYNLGSKQKIRQALKNASKGEDTQGSPCGKS 407 Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 + + SI KKV+ P +D+ N R RSAKLRA ++ Sbjct: 408 NSKWISIQKKVLTPQAKDIQINPRGRSAKLRAAIK 442 >gi|309809920|ref|ZP_07703768.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners SPIN 2503V10-D] gi|308169708|gb|EFO71753.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners SPIN 2503V10-D] Length = 280 Score = 323 bits (828), Expect = 3e-86, Method: Composition-based stats. Identities = 97/256 (37%), Positives = 147/256 (57%), Gaps = 13/256 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76 H VLL + I LN V +DATFG GG++ K ++I D+D +A+ ++ Sbjct: 6 KHYSVLLHETIDNLNLKNDGVYVDATFGGGGHASYLLKQLSNGHLIGFDQDEYAIELAKK 65 Query: 77 TM-----RDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSF 127 + + K + SL F LQ + G+DG+ +DLGVSS Q D +RGFS+ Sbjct: 66 SFLEVLKANSKPKLSLVHDNFGNLQQNLAKLGFIDGIDGIYYDLGVSSPQFDQPERGFSY 125 Query: 128 QKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + + LDMRM + + A +VN + K+L+ IL G+EK A +IA IV +R P Sbjct: 126 RFNARLDMRMDQTKDLDAYKIVNTWSQKELSNILFKYGDEKYARQIAKNIVAKRAIKPIT 185 Query: 187 TTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT +L +I++ + F++ HPA +SFQA+RI VN+E+E L + L A + LK GG + Sbjct: 186 TTFELVDIIKEAIPAFARRTGGHPAKKSFQAIRIAVNDELEVLEKSLLDAIEILKPGGRI 245 Query: 246 IVVSFHSLEDRLVKKF 261 V++F SLED++VKK+ Sbjct: 246 CVITFQSLEDKIVKKY 261 >gi|240168225|ref|ZP_04746884.1| S-adenosyl-methyltransferase MraW [Mycobacterium kansasii ATCC 12478] Length = 330 Score = 323 bits (828), Expect = 3e-86, Method: Composition-based stats. Identities = 111/323 (34%), Positives = 178/323 (55%), Gaps = 18/323 (5%) Query: 22 PVLLEKVIALLNPA-----PGK---VILDATFGAGGYSRSFCKMGS--NVIALDRDPFAV 71 PVL + + LL PA P +++DAT GAGG++ F + +I LDRDP A+ Sbjct: 2 PVLARRCVELLAPALTRRHPDGFGAILVDATLGAGGHAERFLRELPGLRLIGLDRDPSAL 61 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSSMQIDCGDRGF 125 ++ + + E+ +L + + + + + G VDGV+FDLGVSSMQ+D +RGF Sbjct: 62 DIARDRLAPFAERITLIRTRYDGVASVLAELGYGAVESVDGVLFDLGVSSMQLDRAERGF 121 Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 ++ K PLDMRM ++A+D+VN + L IL GEE+ A RIA IV++R P Sbjct: 122 AYAKDAPLDMRMDPDIPLTAADIVNSYDEAALADILRRYGEERFARRIAERIVRQRAHTP 181 Query: 185 FQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 F +T +L +++ + + + + HPA R+FQALRI VN+E++ L + +A AL+ GG Sbjct: 182 FTSTSELVAVVYQAIPAAARRTGGHPAKRTFQALRIAVNDELDTLRGAVPAAMAALRVGG 241 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 ++V+++ SLEDR+VK+ FA + + H F+S+T ++ N Sbjct: 242 RIVVMAYQSLEDRIVKRVFADAVASKTPIGLPVELPGHGPRFRSLTHGAERADAAEMERN 301 Query: 304 RRSRSAKLRAGMRTVERSIEDDS 326 RS + +LRA R + + Sbjct: 302 PRSAAVRLRALQRIDHEAEPRHA 324 >gi|161611203|ref|NP_960839.2| S-adenosyl-methyltransferase MraW [Mycobacterium avium subsp. paratuberculosis K-10] gi|88911700|sp|P62474|RSMH_MYCPA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 335 Score = 323 bits (828), Expect = 3e-86, Method: Composition-based stats. Identities = 121/319 (37%), Positives = 181/319 (56%), Gaps = 18/319 (5%) Query: 20 HVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69 HVPVLLE+ + LL PA G V+LDAT GAGG++ F +IALDRDP Sbjct: 10 HVPVLLERCVELLTPALTRRHPDGSGAVLLDATLGAGGHAERFLADLPGLRLIALDRDPS 69 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSSMQIDCGDR 123 A+ +E + + ++ +L + + + + G VDG++FDLGVSSMQ+D +R Sbjct: 70 ALEIARERLARFADRITLVHMRYDGIAAALTESGYAATESVDGILFDLGVSSMQLDRPER 129 Query: 124 GFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GF++ + PLDMRM S ++A+D++N + +L IL GEE+ A RIA IV+RR Sbjct: 130 GFAYAQDAPLDMRMDPGSPLTAADILNTYDEAELADILHRYGEERFARRIAAQIVRRRAK 189 Query: 183 APFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 PF +T DL SL+ + + ++ HPA R+FQALRI VN+E++ L + L +A AL Sbjct: 190 EPFTSTADLVSLLYQAIPAPARRTGGHPAKRTFQALRIAVNDELDTLRRALPAALDALAV 249 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 G ++V+++ SLEDR+VK+ FA V + H F+++T ++ Sbjct: 250 DGRIVVLAYQSLEDRIVKRLFAQAVASRTPVDLPVELPGHEPRFRALTHGAGRADAAEIE 309 Query: 302 FNRRSRSAKLRAGMRTVER 320 N RS + +LRA RT Sbjct: 310 RNPRSAAVRLRALQRTQAP 328 >gi|194337867|ref|YP_002019661.1| S-adenosyl-methyltransferase MraW [Pelodictyon phaeoclathratiforme BU-1] gi|262824772|sp|B4SHF1|RSMH_PELPB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|194310344|gb|ACF45044.1| S-adenosyl-methyltransferase MraW [Pelodictyon phaeoclathratiforme BU-1] Length = 332 Score = 323 bits (828), Expect = 3e-86, Method: Composition-based stats. Identities = 107/319 (33%), Positives = 170/319 (53%), Gaps = 21/319 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--------GSNVIALDRDPFAV 71 H PVL+ +V+A L P + +D T G GG+S + + GS +I +D+D A+ Sbjct: 9 HEPVLVNEVVAFLVRKP-GIYVDGTLGGGGHSSAMLRALFDAGFLAGSLLIGIDQDDAAL 67 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVP--------DKGVDGVVFDLGVSSMQIDCGDR 123 ET++++ L + F + + + V G++ DLGVSS QI+ DR Sbjct: 68 RVAGETLKEFAASTVLVKGNFCDMGGLIASICAEKGLEPKVMGILLDLGVSSFQINTPDR 127 Query: 124 GFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GFS+ + GPLDMRM + SA+D+VN + ++L R+ GEE ++ IA AIV RQ Sbjct: 128 GFSYLREGPLDMRMDSNASRSAADIVNGYDEQELARLFYRYGEEPRSRSIARAIVAYRQK 187 Query: 183 APFQT-TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 T TQ+L+++I+ + I +R FQALRI VN E++ L Q L L Sbjct: 188 HGAVTYTQELAAIIRGNAHGG-EKVIKTLSRVFQALRIEVNAELDVLRQALYDGIDCLDE 246 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDV 300 G + ++S+HSLEDR+VK+ FA ++ + + + +T+K ++ +++ Sbjct: 247 TGRMAIISYHSLEDRIVKRVFAEKARSDWGPKGVGLREPLSWGSVAPVTRKPLIAAPDEI 306 Query: 301 AFNRRSRSAKLRAGMRTVE 319 A N R+RSAKLR + E Sbjct: 307 ALNSRARSAKLRVIEKIHE 325 >gi|311741520|ref|ZP_07715344.1| S-adenosyl-methyltransferase MraW [Corynebacterium pseudogenitalium ATCC 33035] gi|311303690|gb|EFQ79769.1| S-adenosyl-methyltransferase MraW [Corynebacterium pseudogenitalium ATCC 33035] Length = 346 Score = 322 bits (827), Expect = 3e-86, Method: Composition-based stats. Identities = 113/330 (34%), Positives = 176/330 (53%), Gaps = 23/330 (6%) Query: 10 SSAIHHTIGD---HVPVLLEKVIALLNPA-----PGKVILDATFGAGGYSRSFCKMGS-- 59 + +++ + + HVPV+ E++ LL P V++DAT GAGG++R F + Sbjct: 3 TKDLNYDVAENHGHVPVMRERMADLLRPQVEAAGDKAVLVDATLGAGGHTRYFLESFPEA 62 Query: 60 NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD-----------KGVDGVV 108 VI +DRD A+ E + Y ++F A F +L + + G+ G + Sbjct: 63 RVIGVDRDKQALRNATERLAPYGDRFVGVNARFDELGSAIAEGEGDIFDSARSVGIAGAL 122 Query: 109 FDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEK 167 FDLGVSSMQ+D DRGF+++ PLDMRM S GI+A+DV+N + DL R+L G+E+ Sbjct: 123 FDLGVSSMQLDQADRGFAYKADAPLDMRMDPSQGITAADVLNTYSHGDLARVLKTYGDER 182 Query: 168 QASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIE 226 A +IA A++K R PF + L L+ + + + HPA R+FQALR+ VN E+E Sbjct: 183 FAGKIASAVLKERDKEPFVNSARLVELLYDVIPAATRRTGGHPAKRTFQALRVEVNRELE 242 Query: 227 ELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ 286 + L +AL GG + +S+ SLEDR+VK F + + F+ Sbjct: 243 AIENVLPVITQALSEGGRAVFMSYQSLEDRIVKAAFKELTTSKTPAGLPMDLPGTAPKFK 302 Query: 287 SITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 +T+ ++E+VA N R+ S ++RA R Sbjct: 303 IVTRGAEKASEEEVAENSRAASVRVRAIER 332 >gi|19553366|ref|NP_601368.1| S-adenosyl-methyltransferase MraW [Corynebacterium glutamicum ATCC 13032] gi|62391005|ref|YP_226407.1| S-adenosyl-methyltransferase MraW [Corynebacterium glutamicum ATCC 13032] gi|24212026|sp|Q8NNM7|RSMH_CORGL RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|21324936|dbj|BAB99559.1| Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Corynebacterium glutamicum ATCC 13032] gi|41326344|emb|CAF20506.1| S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Corynebacterium glutamicum ATCC 13032] Length = 337 Score = 322 bits (827), Expect = 3e-86, Method: Composition-based stats. Identities = 108/324 (33%), Positives = 170/324 (52%), Gaps = 20/324 (6%) Query: 20 HVPVLLEKVIALLN-----PAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVS 72 HVPV+ +++ AL+ VI+DAT GAGG++ F +I LDRD A+ Sbjct: 12 HVPVMRDRMAALIAEHVEALGENAVIVDATLGAGGHAEFFLNTFPKARLIGLDRDQNALR 71 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVP-----------DKGVDGVVFDLGVSSMQIDCG 121 + + + E+F Q F L++ + + G+ G +FDLGVSSMQ+D Sbjct: 72 DARARLAPFGERFIGVQTRFDGLREVLESVEGDIIDLAREHGIAGALFDLGVSSMQLDQV 131 Query: 122 DRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGF+++ PLDMRM GI+A+D++N + D+ RIL G+E+ A +IA A++K R Sbjct: 132 ERGFAYRTDAPLDMRMDATQGITAADILNTYSHGDIARILKTYGDERFAGKIASAVLKER 191 Query: 181 QSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 + PF T+ L L+ + + + HPA R+FQALR+ VNNE++ L L AL Sbjct: 192 EKEPFTTSARLVELLYDAIPAATRRTGGHPAKRTFQALRVEVNNELDSLKNVLPQITDAL 251 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 GG + +S+ S ED+LVKKFF + + F+ +T+ ++ + Sbjct: 252 NVGGRAVFMSYQSHEDKLVKKFFTDLTTSKTPPGLPVDLPGTAPQFKQVTRGAETASEAE 311 Query: 300 VAFNRRSRSAKLRAGMRTVERSIE 323 + N R+ K+RA R S + Sbjct: 312 IEENPRAAPVKVRAIERIGNNSGD 335 >gi|217032718|ref|ZP_03438203.1| hypothetical protein HPB128_201g21 [Helicobacter pylori B128] gi|298736407|ref|YP_003728933.1| S-adenosyl-methyltransferase [Helicobacter pylori B8] gi|216945592|gb|EEC24245.1| hypothetical protein HPB128_201g21 [Helicobacter pylori B128] gi|298355597|emb|CBI66469.1| S-adenosyl-methyltransferase [Helicobacter pylori B8] Length = 308 Score = 322 bits (827), Expect = 3e-86, Method: Composition-based stats. Identities = 115/304 (37%), Positives = 176/304 (57%), Gaps = 14/304 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 H VLL++V+ P V++D T G GG+S++ ++ I +D+D FA +E Sbjct: 8 HQSVLLQEVLQAFTPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFAQEIAKER 67 Query: 78 MRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++ ++ +++L F++ ++ + G + GV+ DLGVSS+Q+D +RGF+F S LD Sbjct: 68 LKAFEGRYNLLSGGFAKRFKEALEIHGERIKGVLVDLGVSSLQLDDDNRGFNF-HSHTLD 126 Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM S ++A V+N V L +I GE K+ +IAH I +RR PF+ +DLS Sbjct: 127 MRMDLESELNAQKVINSYPVVALEKIFRDYGEIKEYKKIAHKIAERRAKKPFRDAKDLSD 186 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 + FSKN +IHPAT FQA+RI VNNE+EEL + L+ A G +L V+SFHSL Sbjct: 187 FLSS---FSKNKKIHPATLVFQAVRIEVNNELEELKEFLQCARNL--KGAILCVISFHSL 241 Query: 254 EDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 ED LVK F + + + + + A+ + +TKK + P+ E++ NRRSRSAK+ Sbjct: 242 EDALVKNAFKNYAKNCICDPLSFKCACSNNHALGEILTKKPITPSPEEIKNNRRSRSAKM 301 Query: 312 RAGM 315 R Sbjct: 302 RVFQ 305 >gi|329942720|ref|ZP_08291499.1| S-adenosyl-methyltransferase MraW [Chlamydophila psittaci Cal10] gi|332287316|ref|YP_004422217.1| S-adenosyl-methyltransferase [Chlamydophila psittaci 6BC] gi|313847900|emb|CBY16895.1| putative S-adenosyl-methyltransferase [Chlamydophila psittaci RD1] gi|325506769|gb|ADZ18407.1| S-adenosyl-methyltransferase [Chlamydophila psittaci 6BC] gi|328814980|gb|EGF84969.1| S-adenosyl-methyltransferase MraW [Chlamydophila psittaci Cal10] gi|328914560|gb|AEB55393.1| S-adenosyl-methyltransferase MraW [Chlamydophila psittaci 6BC] Length = 298 Score = 322 bits (827), Expect = 4e-86, Method: Composition-based stats. Identities = 112/308 (36%), Positives = 156/308 (50%), Gaps = 20/308 (6%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI---ALDRDPFAV 71 H+PVL+ + ++L K D T GAGG++ +F +++ A DRD A+ Sbjct: 2 SATPSHIPVLVNECLSLFANRNPKFFCDVTVGAGGHAEAFLSEYPSIVSYDASDRDSAAL 61 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ-KS 130 S +E + + ++ A+F L + DG++ DLGVSSMQ+D RGFSFQ Sbjct: 62 SLAKERLEKFGDRVHFRHASFEDLSKDSKEHVYDGILADLGVSSMQLDNLSRGFSFQGDD 121 Query: 131 GPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM GI+AS+V+N ++L +I GEE Q A A+V R+ T + Sbjct: 122 HDLDMRMDVTKGITASEVLNTLREEELGKIFREYGEEPQWKNAASAVVHFRKRKKIITVR 181 Query: 190 DLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 DL K + +IHP T FQALR++VN E +L L SA + L GG LI++ Sbjct: 182 DLKDATAKVFPSYRLRKKIHPLTLIFQALRVYVNQEDLQLKVFLESAMRWLAPGGRLIII 241 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SF S EDR VK FF + +TKKVV+PT E+ N R RS Sbjct: 242 SFCSSEDRPVKWFFREAEKSGLGT--------------ILTKKVVMPTYEETRKNPRCRS 287 Query: 309 AKLRAGMR 316 AKLR + Sbjct: 288 AKLRCFEK 295 >gi|317180415|dbj|BAJ58201.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori F32] Length = 308 Score = 322 bits (827), Expect = 4e-86, Method: Composition-based stats. Identities = 113/311 (36%), Positives = 174/311 (55%), Gaps = 14/311 (4%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70 + H VLL++V+ P V++D T G GG+S++ + +I +D+D FA Sbjct: 1 MQEIENLHQSVLLQEVLQAFAPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFA 60 Query: 71 VSCGQETMRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSF 127 +E ++ ++ +++L F++ ++ + + GV+ DLGVSS+Q+D +RGF+F Sbjct: 61 QEIAKERLKAFEGRYNLLSGGFAKRFKEALETHDKEIKGVLVDLGVSSLQLDDDNRGFNF 120 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 S LDMRM G++A V+N V L +I GE K+ +IAH I +RR PF+ Sbjct: 121 -HSHALDMRMDLEGGLNAQKVINSYPVVALEKIFKDYGEIKEYKKIAHKIAERRAKKPFK 179 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 +DLS + FSKN +IHPAT FQA+RI VN E+EEL + L+ A G +L Sbjct: 180 DAKDLSDFLSS---FSKNKKIHPATLVFQAVRIEVNRELEELKEFLQCARNL--KGAILC 234 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 V+SFHSLED LVK F + + + + A+ + +TKK + P+ E++ NR Sbjct: 235 VISFHSLEDALVKNAFKDYAKNCICDPLSFKCACSNNHALGEILTKKPITPSPEEIKNNR 294 Query: 305 RSRSAKLRAGM 315 RSRSAK+R Sbjct: 295 RSRSAKMRVFQ 305 >gi|163787483|ref|ZP_02181930.1| S-adenosyl-methyltransferase MraW [Flavobacteriales bacterium ALC-1] gi|159877371|gb|EDP71428.1| S-adenosyl-methyltransferase MraW [Flavobacteriales bacterium ALC-1] Length = 298 Score = 322 bits (827), Expect = 4e-86, Method: Composition-based stats. Identities = 103/305 (33%), Positives = 160/305 (52%), Gaps = 17/305 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H VLL + + L+ P V +D TFG GG+SR + A D+D A++ + Sbjct: 4 HNAVLLIETVDGLDIKPNGVYVDVTFGGGGHSREILSRLGPNGKLYAFDQDKDALANTID 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 E+F L F ++ ++ GV DGV+ D GVSS Q D +RGFS + L Sbjct: 64 -----DERFVLINENFRYIKRFLRFYGVKEVDGVLADFGVSSHQFDVAERGFSTRFEADL 118 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ S ISA VVN + + + +L GE +Q+ +A IV R +T++ L Sbjct: 119 DMRMNQDSKISAYQVVNNYSEEQIKNVLLQYGELRQSPAMARVIVTERAREEIKTSEQLK 178 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +++ + K N++ + +QA+RI VN EIE L + L + LK GG L +S+HS Sbjct: 179 KVLKPFLNHKKENKV--LAQIYQAIRIEVNQEIEVLKELLLQTPEILKEGGRLSFISYHS 236 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDRLVK+F + + R M + P + + K+++P++ ++ N R+RSAKLR Sbjct: 237 LEDRLVKRFIRNGLFEGEPERDMFGNFEVP--LRKV-GKLIIPSRLEIKINNRARSAKLR 293 Query: 313 AGMRT 317 + Sbjct: 294 IAEKI 298 >gi|311086539|gb|ADP66620.1| S-adenosyl-methyltransferase MraW [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] Length = 302 Score = 322 bits (827), Expect = 4e-86, Method: Composition-based stats. Identities = 118/305 (38%), Positives = 182/305 (59%), Gaps = 19/305 (6%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRD 80 + +++I L + +D+TFG GG+S K + ++DRDP A S G + Sbjct: 1 MKKELIDSLKIKKNGIYIDSTFGTGGHSNEILKKLGQSGRLYSIDRDPIAFSIGSKI--- 57 Query: 81 YKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 +F + FS+L D+ ++ V+G++FDLGVSS+QID RGFSF+ GPLDMR Sbjct: 58 KDSRFHIINENFSKLLDFAKNEKIIGKVNGIIFDLGVSSIQIDDYRRGFSFKNDGPLDMR 117 Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M+ + GISAS+ + ++NVK+++ +L GEE+ + +IA+AI +R Q +T +L+++I Sbjct: 118 MNPNYGISASEWLFESNVKEISFVLKNFGEERFSRKIAYAIKRRSQIKKITSTLELANII 177 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 +KT+ KN HPA RSFQA+RI++N E+EE+ + L S K LK GG + ++SFHSLED Sbjct: 178 KKTIPT-KNKFKHPARRSFQAIRIYINQELEEIQKALESTLKILKPGGRISIISFHSLED 236 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 RLVKKF S K + M + + I + ++PTQ ++ N R+RS+ Sbjct: 237 RLVKKFMIKNSTKAIIPYGMPITEEQLNRLTTCKLKIINR--ILPTQNEINNNPRARSSV 294 Query: 311 LRAGM 315 LR Sbjct: 295 LRIAE 299 >gi|167972765|ref|ZP_02555042.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|167973620|ref|ZP_02555897.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|167975916|ref|ZP_02558193.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|167987809|ref|ZP_02569480.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|168363028|ref|ZP_02696202.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|195867888|ref|ZP_03079887.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198273780|ref|ZP_03206314.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|225550865|ref|ZP_03771814.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225551533|ref|ZP_03772479.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|171903084|gb|EDT49373.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|184209218|gb|EDU06261.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188019063|gb|EDU57103.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188998230|gb|EDU67327.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195659727|gb|EDX53107.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195660465|gb|EDX53723.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198249535|gb|EDY74317.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|225379348|gb|EEH01713.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|225380019|gb|EEH02381.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 308 Score = 322 bits (827), Expect = 4e-86, Method: Composition-based stats. Identities = 103/310 (33%), Positives = 157/310 (50%), Gaps = 12/310 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI---ALDRDPFAVS 72 H VLL + I LL+ P + +D TFG GG+S+ K S +D+D A+ Sbjct: 2 EFNQHTTVLLNETIELLHVKPDGIYVDCTFGRGGHSQLILKKLSKKGKLICIDQDQQAID 61 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQK 129 +D + + F L+ + D VDG VFDLG+SS Q+D +RGFS+ K Sbjct: 62 FANNLFKD-NPNVIVIKTNFKNLKSVLYDHQIFHVDGFVFDLGLSSPQLDDPERGFSYHK 120 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM ++A +VN + L I GE K A IA+ IVK R + TT Sbjct: 121 DALLDMRMDQEQKLNAHYIVNHYSFAKLVNIFTKYGEIKYAKTIANGIVKERSTKAINTT 180 Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L +I+ + HPA FQA+RI VN+E+ L + A L G++ + Sbjct: 181 LELVEIIKNYSPKKILFEKKHPARLFFQAIRIEVNDELNILEKAFNDAISMLNPLGVVAI 240 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +SFHSLED++VKK F + + + IP N + + + +K ++P+ +++ N RSR Sbjct: 241 ISFHSLEDKIVKKVFNNYAKNKLP--KEIPLNNYVNQYSLLNQK-IMPSTQELNDNNRSR 297 Query: 308 SAKLRAGMRT 317 S+ LR ++ Sbjct: 298 SSILRGLVKN 307 >gi|119505128|ref|ZP_01627204.1| S-adenosyl-methyltransferase [marine gamma proteobacterium HTCC2080] gi|119459110|gb|EAW40209.1| S-adenosyl-methyltransferase [marine gamma proteobacterium HTCC2080] Length = 307 Score = 322 bits (827), Expect = 4e-86, Method: Composition-based stats. Identities = 119/309 (38%), Positives = 168/309 (54%), Gaps = 12/309 (3%) Query: 18 GDHVPVLLEKVIALLNPAPGK----VILDATFGAGGYSRSFCKM---GSNVIALDRDPFA 70 G H VLLE+ + L G V +D TFG GG+S + ++ G ++A D+DP A Sbjct: 3 GMHQAVLLEEAVEALMAGAGGTGSEVYVDGTFGRGGHSAAILRVLSDGQRLVAFDKDPEA 62 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + FS +F L+ G+ GV+ DLGVSS Q+D G RGFSFQ+ Sbjct: 63 MESA-RLLSSENPAFSFLHDSFGNLER--AGSGLAGVLLDLGVSSPQLDDGSRGFSFQQQ 119 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 GPLDMRM S G +A++ +N A+ DL R+L GEEK A RI A+VKRR PF+ T+ Sbjct: 120 GPLDMRMDNSKGETAAEFINSASEADLRRVLWDFGEEKFARRIVSALVKRRMVEPFERTE 179 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 DL++++ + ++ HPATR+FQALRI VN E+ +L L L GG L+V+S Sbjct: 180 DLAAVVAAANPAWEKHK-HPATRTFQALRIHVNRELADLDILLGKVIDLLAVGGRLVVIS 238 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDR VK F + R + + + K + +++A N R+RSA Sbjct: 239 FHSLEDRRVKTFMRREARGRELPRGVPIRDDERGERLRLLGKPRRASDDELAANPRARSA 298 Query: 310 KLRAGMRTV 318 +R R Sbjct: 299 IMRVAERIA 307 >gi|121613568|ref|YP_001000389.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp. jejuni 81-176] gi|167005332|ref|ZP_02271090.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp. jejuni 81-176] gi|263445762|sp|A1VZ48|RSMH_CAMJJ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|87249530|gb|EAQ72490.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp. jejuni 81-176] Length = 310 Score = 322 bits (826), Expect = 4e-86, Method: Composition-based stats. Identities = 101/302 (33%), Positives = 159/302 (52%), Gaps = 9/302 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76 H+PVLL +V + LD T G GG+S + K ++ IA D+D A+ ++ Sbjct: 4 PHIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKNHPDLKFIACDQDQQALEFSKK 63 Query: 77 TMRDYKEQFSLFQATFSQ-LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 ++D+ + + Q+ FS+ L+ + + G++ D+GVSS Q+D +RGFS LDM Sbjct: 64 RLKDFHNRITFVQSNFSEVLEKISHKEELRGILADIGVSSFQLDNNERGFSVNSD-FLDM 122 Query: 136 RMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM+ S ISA +++N + LT I GE A IA I R P ++ ++L + Sbjct: 123 RMNQNSKISAYEIINTYTKEQLTSIFKDYGELHDAHFIAEKICLERSKNPIKSAKELYQI 182 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 I K + +I AT +FQA+RI VN E++ L L E +L ++SFHSLE Sbjct: 183 IGK--GKQNHRKISKATLAFQAIRIEVNQELKVLKDFLEHLENLKPKNCILAIISFHSLE 240 Query: 255 DRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 DR+VK+FF S + + + ++ Q ITKK + ++E++ N RS AK+R Sbjct: 241 DRIVKQFFKKWSKNCICNEKIMRCECGNNHSLGQIITKKAISASKEELLKNSRSSCAKMR 300 Query: 313 AG 314 A Sbjct: 301 AF 302 >gi|293363236|ref|ZP_06610120.1| S-adenosyl-methyltransferase MraW [Mycoplasma alligatoris A21JP2] gi|292553095|gb|EFF41844.1| S-adenosyl-methyltransferase MraW [Mycoplasma alligatoris A21JP2] Length = 302 Score = 322 bits (826), Expect = 5e-86, Method: Composition-based stats. Identities = 113/307 (36%), Positives = 163/307 (53%), Gaps = 16/307 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H VLLE+ I LN P + +D T G GG+S + + +IA D+D +A+ Q Sbjct: 5 HYSVLLEETIKSLNLQPDGIYVDLTLGMGGHSAKILEKLNKNGMLIAFDKDDYALEISQR 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + ++F L ++ +SQL+ + + VDG++ DLG+SS QID +RGFS+ K L Sbjct: 65 RLSSISDKFILIKSDYSQLKSQLANHNIYKVDGIIADLGISSPQIDNANRGFSYNKDAKL 124 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S + A VVN +V+ L I + K AS++A AI K R P +T L Sbjct: 125 DMRMDTSQELDAEIVVNTYSVEHLRDIFLKYADVKHASQVAKAIEKNR---PIVSTMQLV 181 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ + +PA FQALRI VNNE+ L L A LK L +++FHS Sbjct: 182 EVIKSAYPAALLRAKNPAKAVFQALRIEVNNELYSLKTMLDDAVSLLKTNASLSIITFHS 241 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 +EDRLVK FAS + + + I A F S K V P+ ++ N+RSRSAKLR Sbjct: 242 IEDRLVKHKFASLTASKIPAKMPI---ADKKTFLS---KQVKPSSNEIQENKRSRSAKLR 295 Query: 313 AGMRTVE 319 + ++ Sbjct: 296 ILTKILD 302 >gi|311085963|gb|ADP66045.1| S-adenosyl-methyltransferase MraW [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] Length = 302 Score = 322 bits (826), Expect = 5e-86, Method: Composition-based stats. Identities = 117/305 (38%), Positives = 182/305 (59%), Gaps = 19/305 (6%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRD 80 + +++I L + +D+TFG GG+S K + ++DRDP A S G + Sbjct: 1 MKKELIDSLKIKKNGIYIDSTFGTGGHSNEILKKLGQSGRLYSIDRDPIAFSIGSKI--- 57 Query: 81 YKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 +F + FS+L D+ ++ V+G++FDLGVSS+QID RGFSF+ GPLDMR Sbjct: 58 KDSRFHIINENFSKLLDFAKNEKIIGKVNGIIFDLGVSSIQIDDYRRGFSFKNDGPLDMR 117 Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M+ + GISAS+ + ++N+K+++ +L GEE+ + +IA+AI +R Q +T +L+++I Sbjct: 118 MNPNYGISASEWLFESNIKEISFVLKNFGEERFSRKIAYAIKRRSQIKKITSTLELANII 177 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 +KT+ KN HPA RSFQA+RI++N E+EE+ + L S K LK GG + ++SFHSLED Sbjct: 178 KKTIPT-KNKFKHPARRSFQAIRIYINQELEEIQKALESTLKILKPGGRISIISFHSLED 236 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 RLVKKF S K + M + + I + ++PTQ ++ N R+RS+ Sbjct: 237 RLVKKFMIKNSTKAIIPYGMPITEEQLNRLTTCKLKIINR--ILPTQNEINNNPRARSSV 294 Query: 311 LRAGM 315 LR Sbjct: 295 LRIAE 299 >gi|296273435|ref|YP_003656066.1| S-adenosyl-methyltransferase MraW [Arcobacter nitrofigilis DSM 7299] gi|296097609|gb|ADG93559.1| S-adenosyl-methyltransferase MraW [Arcobacter nitrofigilis DSM 7299] Length = 300 Score = 322 bits (826), Expect = 5e-86, Method: Composition-based stats. Identities = 98/301 (32%), Positives = 159/301 (52%), Gaps = 12/301 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76 H+PVL ++ + + I+D T G G+S K SN +I D+D A+ ++ Sbjct: 4 PHIPVLYKETLGVFENIDSGYIIDCTLGYAGHSEGLLKQNSNVKLICNDQDNEALEFSKK 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + + + + + F + + + + G++ D+GVSS+Q+D DRGF F LDMR Sbjct: 64 RLEPFLNRATFNKGNFETVLNSFKEYDIRGILADIGVSSLQLDKEDRGFGFDSES-LDMR 122 Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M+ + AS VVN + +L R+ GE K+ ++A IV R PF + ++LS+ I Sbjct: 123 MNQEQSLDASVVVNTYSQSELERVFKECGEVKEYKKVASLIVNNR---PFTSAKELSTFI 179 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 K ++ ++H AT FQ +RI VN+E+ L + S E+ L+ ++SFHSLED Sbjct: 180 AKNMH---KGKLHAATLPFQGIRIEVNDELGVLERLFDSIEELKPKNCLIAIISFHSLED 236 Query: 256 RLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 R+VK +F S + + A+ + ITKK ++PT E++ N RSRS+KLR Sbjct: 237 RIVKNYFKKWSKNCICPSDVMRCTCGNDNALGKIITKKPIIPTNEEIKVNPRSRSSKLRV 296 Query: 314 G 314 Sbjct: 297 F 297 >gi|194335059|ref|YP_002016919.1| S-adenosyl-methyltransferase MraW [Prosthecochloris aestuarii DSM 271] gi|262824884|sp|B4S6R7|RSMH_PROA2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|194312877|gb|ACF47272.1| S-adenosyl-methyltransferase MraW [Prosthecochloris aestuarii DSM 271] Length = 333 Score = 322 bits (826), Expect = 5e-86, Method: Composition-based stats. Identities = 111/318 (34%), Positives = 171/318 (53%), Gaps = 21/318 (6%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--------VIALDRDPF 69 G H+PV++ +V LL P + +D T G GG++ S +I +D+D F Sbjct: 5 GYHLPVMVSEVTDLLARRP-GIYIDGTLGGGGHAFSVMSALRRSGFENDSLLIGIDQDSF 63 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK--------GVDGVVFDLGVSSMQIDCG 121 A+ +R + + L + FS++ + V G++ DLGVSS QID Sbjct: 64 ALEEAAGRLRPFASRVRLERGNFSEMAAIIERIRLREGCRLPVMGILLDLGVSSFQIDTP 123 Query: 122 DRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR- 179 DRGFS+ + GPLDMRM G SA+D+VN A +L I+ GEEK++ IA AI R Sbjct: 124 DRGFSYLRQGPLDMRMDPDGGWSAADIVNTAEESELAGIIYRYGEEKKSRAIARAIKARV 183 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 R+ F+ T +L+++++ V + +I +R FQALRI VN+E+ L L L Sbjct: 184 REKGDFRETAELAAVVRSVV-AGHDRQIKSLSRVFQALRIAVNDELGVLESALEDGTACL 242 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQE 298 G + V+S+HSLEDR+VK+FF +S + + + A F+ +T+K VV + + Sbjct: 243 APSGRMGVMSYHSLEDRMVKRFFRDKSEDDWGPKGVGLREPLRSAGFKLVTRKSVVASDD 302 Query: 299 DVAFNRRSRSAKLRAGMR 316 +V N R+RSA+LR + Sbjct: 303 EVRINPRARSARLRVIEK 320 >gi|62184992|ref|YP_219777.1| S-adenosyl-methyltransferase MraW [Chlamydophila abortus S26/3] gi|68565433|sp|Q5L6B5|RSMH_CHLAB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|62148059|emb|CAH63812.1| putative S-adenosyl-methyltransferase [Chlamydophila abortus S26/3] Length = 298 Score = 322 bits (826), Expect = 5e-86, Method: Composition-based stats. Identities = 111/308 (36%), Positives = 158/308 (51%), Gaps = 20/308 (6%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI---ALDRDPFAV 71 H+PVL+ + ++L K D T GAGG++ +F +++ A DRD A+ Sbjct: 2 SATPSHIPVLVNECLSLFADRHPKFFCDVTVGAGGHAEAFLSAYPSIVSYDASDRDVAAL 61 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ-KS 130 S +E + + ++ A+F L + DG++ DLGVSSMQ+D RGFSFQ Sbjct: 62 SMAKEHLEKFGDRVHFHHASFEDLSKDPREHVYDGILADLGVSSMQLDNLSRGFSFQGDD 121 Query: 131 GPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM GI+AS+V++ ++L +I GEE Q A AIV R+ T + Sbjct: 122 HALDMRMDVTKGITASEVLHTLREEELGKIFREYGEEPQWKNAAKAIVHFRRRKKIVTVR 181 Query: 190 DLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 DL K + +IHP T FQALR++VN E +L L SA + L GG LI++ Sbjct: 182 DLKEATAKVFPSYRLRKKIHPLTLIFQALRVYVNQEDVQLKVLLESAMRWLAPGGRLIII 241 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SF S EDR VK FF + + +TKKV++PT E++ N R RS Sbjct: 242 SFCSSEDRPVKWFFREAEKSGLGM--------------ILTKKVIMPTYEEIRKNPRCRS 287 Query: 309 AKLRAGMR 316 AKLR + Sbjct: 288 AKLRCFEK 295 >gi|149409519|ref|XP_001510902.1| PREDICTED: similar to androgen receptor associated coregulator 267-b [Ornithorhynchus anatinus] Length = 436 Score = 322 bits (825), Expect = 6e-86, Method: Composition-based stats. Identities = 132/335 (39%), Positives = 182/335 (54%), Gaps = 38/335 (11%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVSCGQET 77 HVPV++ +V+ L P G+ ILD TFG+GG++R+ + G + ALDRDP A Q+ Sbjct: 101 HVPVMVNEVVNCLAPQQGQSILDMTFGSGGHARAILHKEPGITLYALDRDPSAYKIAQQL 160 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + Y Q FSQ + + GV DGV+ DLG SSMQ+D +RGFS +K GP Sbjct: 161 SQTYPNQVRALLGQFSQAETLLLSAGVQPESLDGVLLDLGCSSMQLDTPERGFSLRKDGP 220 Query: 133 LDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM +A DVVN + + LT IL GEE+ A +IA AIV+ R P T Sbjct: 221 LDMRMDSGRYPDLPTAGDVVNALDQQALTSILRTYGEERHAKKIASAIVQARTIYPITRT 280 Query: 189 QDLSSLIQKTVY----FSKN----NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 Q L+S++ +++ H AT++FQA+RIFVN+E+ EL GL++A+K L+ Sbjct: 281 QQLASIVAGAFPDSALYARKDLLQRSTHIATKTFQAIRIFVNDELNELYAGLKTAQKFLR 340 Query: 241 AGGLLIVVSFHSLEDRLVKKFF-------------------ASRSGKVMAVRHMIPSNAH 281 GG L+ +SFHSLEDR+VK+F R S+ Sbjct: 341 PGGRLVALSFHSLEDRVVKRFLFKIDITEKFNLSRRKKITQVQRGNVDRENEEESSSDMS 400 Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 +Q I KKV+ P +DV N R RSAKLRA ++ Sbjct: 401 HPEWQMIHKKVLTPDTQDVQENPRGRSAKLRAAIK 435 >gi|209554330|ref|YP_002284822.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|263504480|sp|B5ZBN2|RSMH_UREU1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|209541831|gb|ACI60060.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 10 str. ATCC 33699] Length = 308 Score = 322 bits (825), Expect = 6e-86, Method: Composition-based stats. Identities = 103/310 (33%), Positives = 157/310 (50%), Gaps = 12/310 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI---ALDRDPFAVS 72 H VLL + I LL+ P + +D TFG GG+S+ K S +D+D A+ Sbjct: 2 EFNQHTTVLLNETIELLHVKPDGIYVDCTFGRGGHSQLILKKLSKKGKLICIDQDQQAID 61 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQK 129 +D + + F L+ + D VDG VFDLG+SS Q+D +RGFS+ K Sbjct: 62 FANNLFKD-NPNVIVIKTNFKNLKSVLYDHQIFHVDGFVFDLGLSSPQLDDPERGFSYHK 120 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM ++A +VN + L I GE K A IA+ IVK R + TT Sbjct: 121 DALLDMRMDQEQKLNAHYIVNHYSFAKLVNIFTKYGEIKYAKTIANGIVKERSTKAINTT 180 Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 +L +I+ + HPA FQA+RI VN+E+ L + A L G++ + Sbjct: 181 LELVEIIKNYSPKKILFEKKHPARLFFQAIRIEVNDELNILKKAFNDAISMLNPLGVVAI 240 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +SFHSLED++VKK F + + + IP N + + + +K ++P+ +++ N RSR Sbjct: 241 ISFHSLEDKIVKKVFNNYAKNKLP--KEIPLNNYVNQYSLLNQK-IMPSTQELNDNNRSR 297 Query: 308 SAKLRAGMRT 317 S+ LR ++ Sbjct: 298 SSILRGLVKN 307 >gi|255325352|ref|ZP_05366458.1| S-adenosyl-methyltransferase MraW [Corynebacterium tuberculostearicum SK141] gi|255297917|gb|EET77228.1| S-adenosyl-methyltransferase MraW [Corynebacterium tuberculostearicum SK141] Length = 346 Score = 322 bits (825), Expect = 6e-86, Method: Composition-based stats. Identities = 112/330 (33%), Positives = 175/330 (53%), Gaps = 23/330 (6%) Query: 10 SSAIHHTIGD---HVPVLLEKVIALLNPA-----PGKVILDATFGAGGYSRSFCKMGS-- 59 + +++ + + HVPV+ E++ LL P V++DAT GAGG++R F + Sbjct: 3 TKDLNYDVAENHGHVPVMRERMADLLRPQVEAAGDKAVLVDATLGAGGHTRYFLESFPKA 62 Query: 60 NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD-----------KGVDGVV 108 VI +DRD A+ E + Y ++F A F +L + + G+ G + Sbjct: 63 RVIGVDRDKQALRNATERLAPYGDRFVGVNARFDELGSAIAEGEGDIFDSARTVGIAGAL 122 Query: 109 FDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEK 167 FDLGVSSMQ+D DRGF+++ PLDMRM S GI+A+DV+N DL R+L G+E+ Sbjct: 123 FDLGVSSMQLDQADRGFAYKADAPLDMRMDPSQGITAADVLNTYTHGDLARVLKTYGDER 182 Query: 168 QASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIE 226 A +IA A++K R PF+ + L L+ + + + HPA R+FQALR+ VN E+E Sbjct: 183 FAGKIASAVLKERDKEPFENSARLVELLYDVIPAATRRTGGHPAKRTFQALRVEVNRELE 242 Query: 227 ELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ 286 + L +AL GG + +S+ SLEDR+VK F + + F+ Sbjct: 243 AIENVLPVITQALSEGGRAVFMSYQSLEDRIVKAAFKELTTSKTPAGLPMDLPGTAPKFK 302 Query: 287 SITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 +T+ ++E+V N R+ S ++RA R Sbjct: 303 IVTRGAEKASEEEVTENSRAASVRVRAIER 332 >gi|300309670|ref|YP_003773762.1| S-adenosyl-methionine-dependent methyltransferase MraW protein [Herbaspirillum seropedicae SmR1] gi|300072455|gb|ADJ61854.1| S-adenosyl-methionine-dependent methyltransferase MraW protein [Herbaspirillum seropedicae SmR1] Length = 324 Score = 322 bits (825), Expect = 6e-86, Method: Composition-based stats. Identities = 113/308 (36%), Positives = 174/308 (56%), Gaps = 18/308 (5%) Query: 20 HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSC 73 H VLLE+ + L V LD TFG GG+SR+ +IA D+DP A++ Sbjct: 11 HRTVLLEEAVDALAIEGERANGVYLDGTFGRGGHSRAILSRLGPQGRLIAFDKDPLAIAT 70 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 Q+ +F + +F+ + + ++G VDGV+ DLG+SS Q+D RGFSF+ Sbjct: 71 AQKIA---DPRFEIVHDSFATMDQALAERGIARVDGVLMDLGISSPQVDDAARGFSFRLD 127 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 GPLDMRM + G+SA++ + A+ + + +++ GEE+ A +IA IV R P +T+ Sbjct: 128 GPLDMRMDTTRGVSAAEWLATADEQQIAKVIRDYGEERFALQIAKKIVAGRAVEPISSTR 187 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L++L+ + V + PATR+FQA+RIFVN E+EEL GL A + G L+V+S Sbjct: 188 QLAALVAQAVKT-REKGKDPATRTFQAVRIFVNQELEELEVGLEKAFAQMAQHGRLVVIS 246 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 FHSLEDR+VK+F AS++ R + + A + + + V+P+ +V N R+R Sbjct: 247 FHSLEDRIVKQFMASKAHAPQPDRRLPIRAVDLPQAPARLLPR--VMPSAGEVEANPRAR 304 Query: 308 SAKLRAGM 315 SA +R Sbjct: 305 SAVMRGLE 312 >gi|183602416|ref|ZP_02963782.1| S-adenosyl-methyltransferase [Bifidobacterium animalis subsp. lactis HN019] gi|219683269|ref|YP_002469652.1| S-adenosyl-methyltransferase MraW [Bifidobacterium animalis subsp. lactis AD011] gi|241191230|ref|YP_002968624.1| S-adenosyl-methyltransferase MraW [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196636|ref|YP_002970191.1| S-adenosyl-methyltransferase MraW [Bifidobacterium animalis subsp. lactis DSM 10140] gi|263445932|sp|C6A8W4|RSMH_BIFLB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263445940|sp|C6AJH2|RSMH_BIFAS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263447580|sp|B8DSU7|RSMH_BIFA0 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|183218335|gb|EDT88980.1| S-adenosyl-methyltransferase [Bifidobacterium animalis subsp. lactis HN019] gi|219620919|gb|ACL29076.1| S-adenosyl-methyltransferase MraW [Bifidobacterium animalis subsp. lactis AD011] gi|240249622|gb|ACS46562.1| S-adenosyl-methyltransferase [Bifidobacterium animalis subsp. lactis Bl-04] gi|240251190|gb|ACS48129.1| S-adenosyl-methyltransferase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|289177346|gb|ADC84592.1| MraW [Bifidobacterium animalis subsp. lactis BB-12] gi|295794223|gb|ADG33758.1| S-adenosyl-methyltransferase [Bifidobacterium animalis subsp. lactis V9] Length = 353 Score = 322 bits (825), Expect = 6e-86, Method: Composition-based stats. Identities = 107/307 (34%), Positives = 160/307 (52%), Gaps = 11/307 (3%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCG 74 H PVLL++ + L+ PA V +D T G G++ +F K N VI +DRD A+ Sbjct: 8 HKPVLLQECVDLVTPALHASDSVAVDCTLGLAGHTIAFLKAAPNATVIGIDRDEEALDKA 67 Query: 75 QETMRDYK--EQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQK 129 + +F A F Q + + +GV V DLG+SS+QID +RGFS+ Sbjct: 68 TARIAQEGLSARFVPVHAAFDQFDEVLRAQGVSRVQAVFMDLGLSSLQIDERERGFSYAH 127 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM S ++A +++ + L I GEE+ + IA IV++RQS+P +T+ Sbjct: 128 DAPLDMRMDTSQALTAREILATYDADRLAHIFKEYGEERFSKPIAKRIVQQRQSSPLETS 187 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L++L+ + ++ +PA R FQALRI VN E+++L + L L GG L+V Sbjct: 188 SQLTALVDAVIPAARRGSGNPAKRVFQALRIEVNGELDKLRRTLPQIGLHLAVGGRLVVE 247 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 S+HSLEDR VK F A + F+++TK V ++A+N RS S Sbjct: 248 SYHSLEDRTVKNFMAQGLRVDAPADMPVIPPDMQPFFKALTKGAVKADAGEIAYNPRSAS 307 Query: 309 AKLRAGM 315 +LRA Sbjct: 308 VRLRAVE 314 >gi|224372899|ref|YP_002607271.1| S-adenosyl-methyltransferase MraW [Nautilia profundicola AmH] gi|262825192|sp|B9L9G3|RSMH_NAUPA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|223589436|gb|ACM93172.1| S-adenosyl-methyltransferase MraW [Nautilia profundicola AmH] Length = 306 Score = 322 bits (825), Expect = 6e-86, Method: Composition-based stats. Identities = 101/304 (33%), Positives = 164/304 (53%), Gaps = 15/304 (4%) Query: 19 DHVPVLLEKVIALLNPAP-GKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQ 75 H+PVLL + I L N P +D T G GG+S + + N +I +D+D A+ + Sbjct: 7 PHIPVLLNETIGLYNDMPENGYFIDCTLGFGGHSEAILEKYPNIKLIGIDQDAEAMHFAK 66 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK-GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + + ++ S + +P+ V G++ D+GVSS Q+D +RGF+F+ LD Sbjct: 67 NRLARFGDRVQFINKRASSALEELPEDLPVSGILADIGVSSYQLDNKERGFTFESEE-LD 125 Query: 135 MRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM SA DVVN + +DL RI+ GE ++ ++ AI+ +R P ++ ++L+ Sbjct: 126 MRMDKTQDFSAKDVVNFYSKEDLERIIKNYGECRRFKKVVSAIISKR---PIKSNRELAD 182 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 ++ K + FQA+RI VNNE+ EL + L++A+K K G +L +++FHSL Sbjct: 183 ILGHIGLRDK----KDLAKIFQAIRIEVNNELNELEKILKNAKKLAKNGTILGIITFHSL 238 Query: 254 EDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 EDR+VK F S K + + + + +TKK +V ++E++ N RSRSAKL Sbjct: 239 EDRIVKNTFKEWSKKCICPPEAIRCECGGNNQLGKILTKKPLVASKEEIKMNPRSRSAKL 298 Query: 312 RAGM 315 R Sbjct: 299 RGFQ 302 >gi|315926807|gb|EFV06181.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 310 Score = 322 bits (825), Expect = 7e-86, Method: Composition-based stats. Identities = 101/302 (33%), Positives = 160/302 (52%), Gaps = 9/302 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76 H+PVLL +V + LD T G GG+S + K ++ IA D+D A+ ++ Sbjct: 4 PHIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKNHPDLKFIACDQDQQALEFSKK 63 Query: 77 TMRDYKEQFSLFQATFSQ-LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 ++D++ + + Q+ FS+ L+ + + G++ D+GVSS Q+D +RGFS LDM Sbjct: 64 RLKDFRNRITFMQSNFSEVLEKISHKEELRGILADIGVSSFQLDNNERGFSVNSD-FLDM 122 Query: 136 RMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM+ S ISA +++N + LT I GE A IA I R P ++ ++L + Sbjct: 123 RMNQNSKISAYEIINTYTKEQLTSIFKDYGELHDAHFIAEKICLERSKNPIKSAKELYQI 182 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 I K + +I AT +FQA+RI VN E++ L L E +L ++SFHSLE Sbjct: 183 IGK--GKQNHRKISKATLAFQAIRIEVNQELKVLKDFLEHLENLKPKNCILAIISFHSLE 240 Query: 255 DRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 DR+VK+FF S + + + ++ Q ITKK + ++E++ N RS AK+R Sbjct: 241 DRIVKQFFKKWSKNCICNEKIMRCECGNNHSLGQIITKKAISASKEELLKNSRSSCAKMR 300 Query: 313 AG 314 A Sbjct: 301 AF 302 >gi|308063505|gb|ADO05392.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori Sat464] Length = 308 Score = 322 bits (825), Expect = 7e-86, Method: Composition-based stats. Identities = 114/304 (37%), Positives = 175/304 (57%), Gaps = 14/304 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H VLL++V+ P V++D T G GG+S++ + +I +D+D FA +E Sbjct: 8 HQSVLLQEVLQAFAPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFAQEIAKER 67 Query: 78 MRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++ ++ +++L F++ ++ + + GV+ DLGVSS+Q+D +RGF+F S LD Sbjct: 68 LKAFEGRYNLLSGGFAKRFKEALETHNKEIKGVLVDLGVSSLQLDDDNRGFNF-HSHALD 126 Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM SG++A V+N V L +I GE K+ +IAH I +RR PF+ +DLS Sbjct: 127 MRMDLESGLNAQKVINSYPVVALEKIFKGYGEIKEYKKIAHKIAERRAKKPFKDAKDLSD 186 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 + SKN +IHPAT FQA+RI VN+E+EEL + L+ A G +L V+SFHSL Sbjct: 187 FLSS---LSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCARNL--KGAILCVISFHSL 241 Query: 254 EDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 ED LVK F + + + + A+ + +TKK + P+ E++ NRRSRSAK+ Sbjct: 242 EDALVKNAFKDYAKNCICDPLSFKCTCSNNHALGEILTKKPITPSPEEIKNNRRSRSAKM 301 Query: 312 RAGM 315 RA Sbjct: 302 RAFQ 305 >gi|210134911|ref|YP_002301350.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori P12] gi|226709920|sp|B6JLU2|RSMH_HELP2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|210132879|gb|ACJ07870.1| S-adenosyl-methyltransferase [Helicobacter pylori P12] Length = 308 Score = 322 bits (825), Expect = 7e-86, Method: Composition-based stats. Identities = 114/304 (37%), Positives = 176/304 (57%), Gaps = 14/304 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H VLL++V+ P V++D T G GG+S++ + +I +D+D FA +E Sbjct: 8 HQSVLLQEVLQAFAPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFAQEIAKER 67 Query: 78 MRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++ ++ +++L F++ ++ + G + GV+ DLGVSS+Q+D +RGF+F S LD Sbjct: 68 LKAFEGRYNLLSGGFAKRFKEALEMHGERIKGVLVDLGVSSLQLDDDNRGFNF-HSHALD 126 Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM S ++A V+N +V L +I GE K+ +IAH I +RR PF+ +DLS Sbjct: 127 MRMDLESDLNAQKVINSYSVVALEKIFRDYGEIKEYKKIAHKIAERRAKKPFKDAKDLSD 186 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 + FSKN +IHPAT FQA+RI VN+E+EEL + L+ A G +L V+SFHSL Sbjct: 187 FLSS---FSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCARNL--KGAILCVISFHSL 241 Query: 254 EDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 ED LVK F + + + + A+ +TKK ++P+ E++ NRRSRSAK+ Sbjct: 242 EDALVKNAFKDYAKNCICDPSSFKCTCSNNHALGTILTKKPIIPSPEEIKNNRRSRSAKM 301 Query: 312 RAGM 315 R Sbjct: 302 RVFQ 305 >gi|255020004|ref|ZP_05292077.1| S-adenosyl-methyltransferase MraW [Acidithiobacillus caldus ATCC 51756] gi|254970533|gb|EET28022.1| S-adenosyl-methyltransferase MraW [Acidithiobacillus caldus ATCC 51756] Length = 324 Score = 322 bits (825), Expect = 7e-86, Method: Composition-based stats. Identities = 116/326 (35%), Positives = 180/326 (55%), Gaps = 14/326 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNP---APG-KVILDATFGAGGYSRSF---CKMGSNV 61 M+ A T H PVLL +V+A P PG ++ +DAT G GG+S + + Sbjct: 1 MTDA-QDTDTSHQPVLLAEVLAACTPLLGQPGPRLWVDATGGRGGHSAALAHLLGAQDRL 59 Query: 62 IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQI 118 + LDRDP A++ + + E+ S+ QA FS++ + + G ++ DLGVSS Q+ Sbjct: 60 LVLDRDPGAIAFLRTRFAE-DERVSVRQAEFSRVAQVLAEMGTGQAQFILADLGVSSPQL 118 Query: 119 DCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177 D +RGFSF + GPLDMRM+ G+SA+ + A ++ ++L GEE++A RIA AIV Sbjct: 119 DRPERGFSFLRDGPLDMRMNPEQGMSAAQWLATAEAAEIAQVLRDYGEEREARRIARAIV 178 Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 + R P T L+ L+ + ++ IHPATR+FQA+R+ +N+E+ E+ L +A Sbjct: 179 RERAVRPLTRTTQLAELVAGLLPRARAQAIHPATRTFQAIRMHINDELAEIRAFLPAAMD 238 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297 +L G L V+SFHSLEDRLVK+FF + + + + A + + + + Sbjct: 239 SLGPDGRLAVISFHSLEDRLVKRFFRADTRQPDPDLPLRNWEIPEAPWFPLGR-ASRAST 297 Query: 298 EDVAFNRRSRSAKLRAGMRTVERSIE 323 E+VA N R+RSA LR + + Sbjct: 298 EEVAHNPRARSATLRVAQKRGDPHRA 323 >gi|326402227|ref|YP_004282308.1| ribosomal RNA small subunit methyltransferase H [Acidiphilium multivorum AIU301] gi|325049088|dbj|BAJ79426.1| ribosomal RNA small subunit methyltransferase H [Acidiphilium multivorum AIU301] Length = 313 Score = 322 bits (825), Expect = 7e-86, Method: Composition-based stats. Identities = 140/308 (45%), Positives = 187/308 (60%), Gaps = 9/308 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78 HVPVL E+ +A+L P V LD TFG GGYS S + S V A+DRDP A++ G Sbjct: 7 HVPVLREEAVAMLAPRADGVYLDGTFGGGGYSASMLEAASCTVWAIDRDPAAIARGAALA 66 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 Y ++ L + F L + D+GV DG VFD GVSS Q+D RGFSF+ GPLDM Sbjct: 67 ARYPDRLHLIEGRFGDLLALLRDRGVTALDGAVFDFGVSSYQLDDPSRGFSFRTDGPLDM 126 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RM +G +A+D+VN +L IL GEE+ + RIA AIV+RR + PF+TT DL+++I Sbjct: 127 RMGAAGPTAADIVNGYAEAELADILFHFGEERASRRIAAAIVRRRAAQPFETTADLAAVI 186 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + V + + I PATRSFQALRI VN E+ E+ + L +A L GG L+ VSFHSLED Sbjct: 187 RTVVRPDR-SGIDPATRSFQALRIEVNQELAEIERALEAAASLLAPGGRLVAVSFHSLED 245 Query: 256 RLVKKFFASRSGKVMAVRHMIPSN----AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 R+VK+F + +G V A PS A F+++T+ VV P + + A N R+RSA+L Sbjct: 246 RIVKRFMNAATGHVAAPSRHDPSGLARQAAAPRFRALTRGVVTPGEAETAANPRARSARL 305 Query: 312 RAGMRTVE 319 R R Sbjct: 306 RGIERLAA 313 >gi|148926658|ref|ZP_01810339.1| hypothetical protein Cj8486_0712c [Campylobacter jejuni subsp. jejuni CG8486] gi|145845177|gb|EDK22272.1| hypothetical protein Cj8486_0712c [Campylobacter jejuni subsp. jejuni CG8486] Length = 312 Score = 321 bits (824), Expect = 7e-86, Method: Composition-based stats. Identities = 101/302 (33%), Positives = 160/302 (52%), Gaps = 9/302 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76 H+PVLL +V + LD T G GG+S + K ++ IA D+D A+ ++ Sbjct: 6 PHIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKNHPDLKFIACDQDQQALEFSKK 65 Query: 77 TMRDYKEQFSLFQATFSQ-LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 ++D++ + + Q+ FS+ L+ + + G++ D+GVSS Q+D +RGFS LDM Sbjct: 66 RLKDFRNRITFMQSNFSEVLEKISHKEELRGILADIGVSSFQLDNNERGFSVNSD-FLDM 124 Query: 136 RMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM+ S ISA +++N + LT I GE A IA I R P ++ ++L + Sbjct: 125 RMNQNSKISAYEIINTYTKEQLTSIFKDYGELHDAHFIAEKICLERSKNPIKSAKELYQI 184 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 I K + +I AT +FQA+RI VN E++ L L E +L ++SFHSLE Sbjct: 185 IGK--GKQNHRKISKATLAFQAIRIEVNQELKVLKDFLEHLENLKPKNCILAIISFHSLE 242 Query: 255 DRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 DR+VK+FF S + + + ++ Q ITKK + ++E++ N RS AK+R Sbjct: 243 DRIVKQFFKKWSKNCICNEKIMRCECGNNHSLGQIITKKAISASKEELLKNSRSSCAKMR 302 Query: 313 AG 314 A Sbjct: 303 AF 304 >gi|51246756|ref|YP_066640.1| hypothetical protein DP2904 [Desulfotalea psychrophila LSv54] gi|54036176|sp|Q6AJ47|RSMH_DESPS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|50877793|emb|CAG37633.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54] Length = 295 Score = 321 bits (824), Expect = 7e-86, Method: Composition-based stats. Identities = 106/306 (34%), Positives = 166/306 (54%), Gaps = 25/306 (8%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H+ VLLE+ + L PG + +D T G GG++ + + V+A + D A+ +E Sbjct: 7 HISVLLEETMEFLCLQPGGIYVDGTMGLGGHTSAILERTAPDGRVVAFEWDENAIKASRE 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + Y E+ +L + F+++ + + G+ DG++ D+G+SS+Q+D G RGFSFQ+ L Sbjct: 67 RLAPYGERLTLVRRNFAEIGVGLTEAGISHIDGLLIDIGLSSLQLDTGTRGFSFQRDDDL 126 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM G ++A+ ++ + L + GEE+QA IA AIV R+ P QTT+ L Sbjct: 127 DMRMDERGEMTAATIIATCTEEQLADLFYCYGEERQARPIAAAIVAARKLEPIQTTKQLV 186 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++ + + +IH AT+ FQALRI VN E+E L++ + A + LK G ++SFH Sbjct: 187 RVVARAIPKRFHPKKIHVATKVFQALRIAVNTELENLSKIIDDAGEFLKPGSRFCIISFH 246 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+VK+ F F+ IT K V +E++ N RSRSA L Sbjct: 247 SLEDRIVKRKFREN-----------------PNFKVITNKPVKAGEEELDRNYRSRSALL 289 Query: 312 RAGMRT 317 R + Sbjct: 290 RVAEKV 295 >gi|262202917|ref|YP_003274125.1| S-adenosyl-methyltransferase MraW [Gordonia bronchialis DSM 43247] gi|262086264|gb|ACY22232.1| S-adenosyl-methyltransferase MraW [Gordonia bronchialis DSM 43247] Length = 336 Score = 321 bits (824), Expect = 8e-86, Method: Composition-based stats. Identities = 107/311 (34%), Positives = 174/311 (55%), Gaps = 11/311 (3%) Query: 20 HVPVLLEKVIALLNPA----PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSC 73 H+PVL ++ LL P+ +V++DAT GAGG++ ++ +DRD A++ Sbjct: 16 HLPVLAARMAELLAPSLESGDERVLVDATLGAGGHAELMLNRFPNLRLVGIDRDAHALAI 75 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQKS 130 ++ + ++ SL QA F QL + D +DG+ +FDLGVSSMQ+D RGF++ Sbjct: 76 AEKRLAPMADRISLHQARFDQLPQVLADAAIDGIDGALFDLGVSSMQLDQPGRGFAYAID 135 Query: 131 GPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM G++A+DV+N + +L R+L GEE+ A RIA A++ R+ PF T+ Sbjct: 136 APLDMRMNDEDGLTAADVLNTYSHGELARVLSEYGEERFAGRIASAVIAEREKEPFTTSA 195 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L +L+ + + + + HPA R+FQALRI VN+E++ + + +A A + GG + V+ Sbjct: 196 RLVALLYQAIPAATRRTGGHPAKRTFQALRIEVNHELDAIRAAVPAALDATRVGGRVAVM 255 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 S+ SLEDR++K+ FA+R+ + F+ IT+ P ++ N RS Sbjct: 256 SYQSLEDRIIKREFATRTTSTSPRGLPVELPGTAPRFRLITRGAERPDAAELERNPRSAP 315 Query: 309 AKLRAGMRTVE 319 ++R R Sbjct: 316 VRVRVIERVAA 326 >gi|308807246|ref|XP_003080934.1| MRAW_PARUW S-adenosyl-methyltransferase mraW ref|YP_007310.1| probable S-ade (ISS) [Ostreococcus tauri] gi|116059395|emb|CAL55102.1| MRAW_PARUW S-adenosyl-methyltransferase mraW ref|YP_007310.1| probable S-ade (ISS) [Ostreococcus tauri] Length = 370 Score = 321 bits (824), Expect = 8e-86, Method: Composition-based stats. Identities = 111/325 (34%), Positives = 173/325 (53%), Gaps = 27/325 (8%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSC 73 H V+++++++ + +D T GAGG++++ + + I D D A + Sbjct: 47 TAPHYSVMMDEILSAFRDVELRAHVDGTLGAGGHAQAMIRTHPEMEHFIGFDVDASAHAI 106 Query: 74 GQETMRDYKE----------QFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSSMQ 117 + + +E + SL +A F Q+ + G +DGVV DLGVSSM Sbjct: 107 ARPRLERAREDARGGEAGALKVSLVEANFRQMAQALEAMGGIHRAGIDGVVLDLGVSSMH 166 Query: 118 IDCGDRGFSFQKSGPLDMRMSCSGIS-ASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 +D +RGFSF GPLDMRM S + A ++VN +++ RIL GEE+ +A I Sbjct: 167 LDRAERGFSFMNDGPLDMRMGPSAKTSAEEIVNAWPEEEIGRILRDYGEERHWRLLAKRI 226 Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236 +RR + TT++L + K IHPATR+FQ +RI VN+E+ + + +A Sbjct: 227 CERRAAKAITTTRELVDALGNV--PGKWGSIHPATRTFQGIRIAVNDELGAVEDVIPAAI 284 Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAV-----RHMIPSNAHPAVFQSITKK 291 +AL+ GG L ++SFHSLED +VKK F +G+ + R+M P V + IT+K Sbjct: 285 EALRPGGRLAIISFHSLEDSIVKKKFRFYAGQAEPLGETFNRYMDQPEKPPKVVKLITRK 344 Query: 292 VVVPTQEDVAFNRRSRSAKLRAGMR 316 +VP+ ++V N RSRSAKLR + Sbjct: 345 PLVPSVDEVDENVRSRSAKLRVCEK 369 >gi|239917869|ref|YP_002957427.1| S-adenosyl-methyltransferase MraW [Micrococcus luteus NCTC 2665] gi|281413637|ref|ZP_06245379.1| S-adenosyl-methyltransferase MraW [Micrococcus luteus NCTC 2665] gi|263456502|sp|C5CA38|RSMH_MICLC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|239839076|gb|ACS30873.1| S-adenosyl-methyltransferase MraW [Micrococcus luteus NCTC 2665] Length = 331 Score = 321 bits (824), Expect = 8e-86, Method: Composition-based stats. Identities = 108/325 (33%), Positives = 174/325 (53%), Gaps = 15/325 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKMGSN 60 M + H+PV+ ++V+ LL PA V +D T G GG++ + + Sbjct: 1 MDAGQPRPEDRHLPVMRDRVVDLLAPAVQAALEAGRTPVAVDGTLGMGGHTEALLTRFPH 60 Query: 61 V--IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSS 115 + I +DRD A + E + ++ F T+ ++ + + GV D ++DLGVSS Sbjct: 61 LRVIGIDRDAHAQAMAAERLGPLADRVIPFHGTYDRVPEAMAAAGVTKVDAALYDLGVSS 120 Query: 116 MQIDCGDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAH 174 Q+D +RGF++ PLDMRM + SA+ +V + + ++L RI+ GEE+ A IA Sbjct: 121 YQLDDRERGFAYSYDAPLDMRMDDTAERSAATLVAELDEQELRRIIRRDGEERFAGPIAR 180 Query: 175 AIVKRRQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLR 233 AIV+ R AP +TT L +I+ V + HPA R+FQALRI VN E++ L + Sbjct: 181 AIVRARAEAPIETTGRLVEVIRSAVPVAAGATGGHPAKRTFQALRIAVNEELDILDAAVP 240 Query: 234 SAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV 293 + AL GG L+V+S+HSLEDR+ K+ ++ + + H V + +T+ Sbjct: 241 AILDALHVGGRLVVMSYHSLEDRITKRHLSAWATSTAPPGFPVVLEEHEPVVRVLTRGTE 300 Query: 294 VPTQEDVAFNRRSRSAKLRAGMRTV 318 PT+E+++ NRR+ SAK+RA + Sbjct: 301 KPTEEEISENRRASSAKVRAVEKIR 325 >gi|207092313|ref|ZP_03240100.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori HPKX_438_AG0C1] Length = 308 Score = 321 bits (824), Expect = 8e-86, Method: Composition-based stats. Identities = 113/310 (36%), Positives = 176/310 (56%), Gaps = 14/310 (4%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70 + H VLL++V+ P V++D T G GG+S++ + +I +D+D FA Sbjct: 1 MQEIENLHQSVLLQEVLQAFAPLEKGVLIDCTLGLGGHSKAILSQKPHLKLIGIDKDKFA 60 Query: 71 VSCGQETMRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSF 127 +E +++++ +++L F++ ++ + + GV+ DLGVSS+Q+D +RGF+F Sbjct: 61 QEIAKERLKEFEGRYNLLSGGFAKRFKEALETHNKEIKGVLVDLGVSSLQLDDDNRGFNF 120 Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 S LDMRM S ++A V+N V L +I GE K+ +IAH I +RR PF+ Sbjct: 121 -HSHALDMRMDLESELNAQKVINSYPVIALEKIFKDYGEIKEYKKIAHKIAERRAKKPFK 179 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 +DLS + FSKN +IHPAT FQA+RI VN+E+EEL + L+ A G +L Sbjct: 180 DAKDLSEFLSS---FSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCARNL--KGAILC 234 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 V+SFHSLED LVK F + + + + A+ + +TKK + P+ E++ NR Sbjct: 235 VISFHSLEDVLVKNAFKDYAKNCICDPLSFKCACSNNHALGEILTKKPITPSPEEIKNNR 294 Query: 305 RSRSAKLRAG 314 RSRSAK+R Sbjct: 295 RSRSAKMRVF 304 >gi|319778491|ref|YP_004129404.1| rRNA small subunit methyltransferase H [Taylorella equigenitalis MCE9] gi|317108515|gb|ADU91261.1| rRNA small subunit methyltransferase H [Taylorella equigenitalis MCE9] Length = 288 Score = 321 bits (824), Expect = 9e-86, Method: Composition-based stats. Identities = 115/288 (39%), Positives = 171/288 (59%), Gaps = 13/288 (4%) Query: 40 ILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ 96 +D TFG GG+SR + S ++ D+DP A+ E+++ + + FS + Sbjct: 2 YVDGTFGRGGHSRYLLSLLDKNSKLVVFDKDPMAIEAA-ESLKKEDGRVLVVHGAFSTMS 60 Query: 97 DYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQAN 152 D + D G VDG+ DLG+SS QID G RGFSF + GPLDMRM S G++A++ + A+ Sbjct: 61 DVLSDFGITKVDGITMDLGISSPQIDDGTRGFSFMRDGPLDMRMDNSKGLTAAEWLASAD 120 Query: 153 VKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATR 212 V+ + +++ GEE+ A +IA AI RR+ P +TT +L+ LI V ++ HPATR Sbjct: 121 VELIAKVIKEYGEERFAFQIAKAIASRREHNPIRTTHELAELIAANV-RTREKGQHPATR 179 Query: 213 SFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVM-- 270 +FQA+RI++N E+EEL++ L SA + LK GG L V+SFHSLEDR+VK+F A S Sbjct: 180 TFQAIRIYINEELEELSRSLTSAIELLKVGGRLSVISFHSLEDRIVKQFIAKESNPASEF 239 Query: 271 AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318 A + + +S+ K + T++++ N RSRSA LR R Sbjct: 240 ARLPIREVDMPKGNLKSLGK--LTATEDEILKNPRSRSAILRVAERIE 285 >gi|317177525|dbj|BAJ55314.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori F16] Length = 308 Score = 321 bits (824), Expect = 9e-86, Method: Composition-based stats. Identities = 112/304 (36%), Positives = 172/304 (56%), Gaps = 14/304 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 H VLL++V+ P V++D T G GG+S++ ++ I +D+D FA +E Sbjct: 8 HQSVLLQEVLQAFVPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFAQEIAKER 67 Query: 78 MRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++ ++ +++L F++ ++ + + GV+ DLGVSS+Q+D +RGF+F S LD Sbjct: 68 LKAFEGRYNLLSGGFAKRFKEALETHNKEIKGVLVDLGVSSLQLDDDNRGFNF-HSHALD 126 Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM G ++A V+N V L +I GE K+ +IAH I +RR PF+ +DLS Sbjct: 127 MRMDLEGDLNAQKVINSYPVVALEKIFKDYGEIKEYKKIAHKITERRAKKPFKDAKDLSD 186 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 + SKN +IHPAT FQA+RI VN E+EEL + L+ A G +L V+SFHSL Sbjct: 187 FLSS---LSKNKKIHPATLVFQAVRIEVNRELEELKEFLQCARNL--KGAILCVISFHSL 241 Query: 254 EDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 ED LVK F + + + + A+ + +TKK + P+ E++ NRRSRSAK+ Sbjct: 242 EDALVKNAFKDYAKNCICNPLSFKCTCSNNHALGEILTKKPITPSPEEIKNNRRSRSAKM 301 Query: 312 RAGM 315 R Sbjct: 302 RVFQ 305 >gi|317178936|dbj|BAJ56724.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori F30] Length = 308 Score = 321 bits (824), Expect = 9e-86, Method: Composition-based stats. Identities = 112/311 (36%), Positives = 173/311 (55%), Gaps = 14/311 (4%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70 + H VLL++V+ P V++D T G GG+S++ + +I +D+D FA Sbjct: 1 MQEIENLHQSVLLQEVLQAFAPLEEGVLIDCTLGLGGHSKAILSQKPHLKLIGIDKDKFA 60 Query: 71 VSCGQETMRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSF 127 +E ++ ++ +++L F++ ++ + + GV+ DLGVSS+Q+D +RGF+F Sbjct: 61 QEIAKERLKAFEGRYNLLSGGFAKRFKEALETHDKEIKGVLVDLGVSSLQLDDDNRGFNF 120 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 S LDMRM G++A V+N V L +I GE K+ +IAH I +RR PF+ Sbjct: 121 -HSHALDMRMDLEGGLNAQKVINSYPVVALEKIFKDYGEIKEYKKIAHKIAERRAKKPFK 179 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 +DLS + SKN +IHPAT FQA+RI VN E+EEL + L+ A G +L Sbjct: 180 DAKDLSDFLSS---LSKNKKIHPATLVFQAVRIEVNRELEELKEFLQCARNL--KGAILC 234 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 V+SFHSLED LVK F + + + + A+ + +TKK + P+ E++ NR Sbjct: 235 VISFHSLEDSLVKNAFKDYAKNCICDPLSFKCACSNNHALGEILTKKPITPSPEEIKNNR 294 Query: 305 RSRSAKLRAGM 315 RSRSAK+R Sbjct: 295 RSRSAKMRVFQ 305 >gi|86149768|ref|ZP_01067997.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp. jejuni CF93-6] gi|88596954|ref|ZP_01100190.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp. jejuni 84-25] gi|85839586|gb|EAQ56846.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp. jejuni CF93-6] gi|88190643|gb|EAQ94616.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp. jejuni 84-25] gi|284925949|gb|ADC28301.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp. jejuni IA3902] gi|315929134|gb|EFV08361.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp. jejuni 305] Length = 310 Score = 321 bits (824), Expect = 9e-86, Method: Composition-based stats. Identities = 101/302 (33%), Positives = 160/302 (52%), Gaps = 9/302 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76 H+PVLL +V + LD T G GG+S + K ++ IA D+D A+ ++ Sbjct: 4 PHIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKNHPDLKFIACDQDQQALKFSKK 63 Query: 77 TMRDYKEQFSLFQATFSQ-LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 ++D++ + + Q+ FS+ L+ + + G++ D+GVSS Q+D +RGFS LDM Sbjct: 64 RLKDFRNRITFMQSNFSEVLEKISHKEELRGILADIGVSSFQLDNNERGFSVNSD-FLDM 122 Query: 136 RMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM+ S ISA +++N + LT I GE A IA I R P ++ ++L + Sbjct: 123 RMNQNSKISAYEIINTYTKEQLTSIFKDYGELHDAHFIAEKICLERSKNPIKSAKELYQI 182 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 I K + +I AT +FQA+RI VN E++ L L E +L ++SFHSLE Sbjct: 183 IGK--GKQNHRKISKATLAFQAIRIEVNQELKVLKDFLEHLENLKPKNCILAIISFHSLE 240 Query: 255 DRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 DR+VK+FF S + + + ++ Q ITKK + ++E++ N RS AK+R Sbjct: 241 DRIVKQFFKKWSKNCICNEKIMRCECGNNHSLGQIITKKAISASKEELLKNSRSSCAKMR 300 Query: 313 AG 314 A Sbjct: 301 AF 302 >gi|169629085|ref|YP_001702734.1| S-adenosyl-methyltransferase MraW [Mycobacterium abscessus ATCC 19977] gi|263456523|sp|B1MP29|RSMH_MYCA9 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|169241052|emb|CAM62080.1| S-adenosyl-methyltransferase MraW [Mycobacterium abscessus] Length = 331 Score = 321 bits (824), Expect = 9e-86, Method: Composition-based stats. Identities = 117/327 (35%), Positives = 179/327 (54%), Gaps = 18/327 (5%) Query: 12 AIHHTIGDHVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKMGS--NV 61 + + + H+PV+L++ LL PA G V++DAT GAGG++ F M V Sbjct: 2 SDNDSRYGHIPVMLDRCYELLAPALTADSTDGSGAVLVDATLGAGGHTEHFLTMLPGLTV 61 Query: 62 IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSS 115 I LDRD A+ + + + +F + L D + G VDGV+FDLGVSS Sbjct: 62 IGLDRDTNALDIARSRLAPFGTRFVGVHTRYDGLADALDGLGYRTTSSVDGVLFDLGVSS 121 Query: 116 MQIDCGDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAH 174 MQ+D +RGF++ PLDMRM+ ++A+D++N + +L+R+L GEE+ A RIA Sbjct: 122 MQLDQAERGFAYSVDAPLDMRMNAQDELTAADILNTYSAVELSRVLSRFGEERFARRIAD 181 Query: 175 AIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLR 233 IV+RR + PF + L L+ T+ + + HPA R+FQALRI VN E+E LA + Sbjct: 182 EIVRRRANEPFTRSGQLVELLYATIPAATRRTGGHPAKRTFQALRIAVNAELESLATAIP 241 Query: 234 SAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV 293 +A AL+ GG + V+++ SLED++VK FA+ + + + F +IT+ Sbjct: 242 AAMAALRPGGRVAVMAYQSLEDKIVKAEFAAATASRSPIDLPVELPGDAPEFTAITRGAE 301 Query: 294 VPTQEDVAFNRRSRSAKLRAGMRTVER 320 E++ N RS +LRA R +R Sbjct: 302 RANDEEIEVNPRSAPVRLRAVERVADR 328 >gi|294155677|ref|YP_003560061.1| S-adenosyl-methyltransferase [Mycoplasma crocodyli MP145] gi|291600063|gb|ADE19559.1| S-adenosyl-methyltransferase [Mycoplasma crocodyli MP145] Length = 300 Score = 321 bits (823), Expect = 1e-85, Method: Composition-based stats. Identities = 101/305 (33%), Positives = 156/305 (51%), Gaps = 15/305 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H VLL + I LN P + +D T G GG+S + + +IA D+D +A+ Q+ Sbjct: 5 HYSVLLNETIDSLNIKPDGIYIDLTLGMGGHSTKILEKLKSGLLIAFDKDKYALEISQKR 64 Query: 78 MRDYKEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + ++F L + +S+L+ + VDG++ DLG+SS Q+D +RGFS+ K LD Sbjct: 65 LSQISDKFILVNSDYSKLKSELFKLNINKVDGIIADLGISSPQVDDANRGFSYNKDARLD 124 Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM + I A +VN + + L I + K A ++A I K R P T +L Sbjct: 125 MRMDTNQEIDAHYIVNNYSCEQLVDIFLKYADVKLAKQVAKVIEKNR---PINNTLELVE 181 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 +I+ + +PA FQALRI VNNE++ L L A + LK L +++FHS+ Sbjct: 182 IIKSAYPAAILRAKNPAKAVFQALRIEVNNELDSLKTMLDDAIELLKENSSLSIITFHSI 241 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 EDRLVK F M + I + + K + P+ +++ N+RSRSAKLR Sbjct: 242 EDRLVKHKFTELCSSKMPAKMPI------NEIKYFSTKQIKPSAKELLENKRSRSAKLRI 295 Query: 314 GMRTV 318 + + Sbjct: 296 LTKLI 300 >gi|227504684|ref|ZP_03934733.1| S-adenosyl-methyltransferase MraW [Corynebacterium striatum ATCC 6940] gi|227198694|gb|EEI78742.1| S-adenosyl-methyltransferase MraW [Corynebacterium striatum ATCC 6940] Length = 355 Score = 321 bits (823), Expect = 1e-85, Method: Composition-based stats. Identities = 115/354 (32%), Positives = 192/354 (54%), Gaps = 28/354 (7%) Query: 2 ESKSCKTMSSAIHHTIGD---HVPVLLEKVIALLNPA-----PGKVILDATFGAGGYSRS 53 + K+ +++ I++ I + HVPV+ E++ LL PA V++D T GAGG++ Sbjct: 4 QDKNTDNVANNINYDIAENHGHVPVMRERMAQLLAPAIEAAGSNAVVVDGTLGAGGHADF 63 Query: 54 FCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQ-----------LQDYVP 100 F + +V+ +DRD +++ E + ++++F A F + + D Sbjct: 64 FLRTFPNLHVVGVDRDGASLAAATERLEPFEDRFVGVNARFDEVGGEIARGEGAIFDIAR 123 Query: 101 DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRI 159 + G+ G +FDLGVSSMQ+D +RGF+++ PLDMRM S GI+A+DV+N + DL RI Sbjct: 124 EHGIAGALFDLGVSSMQLDQVERGFAYKTDAPLDMRMDPSHGITAADVLNTYSHGDLARI 183 Query: 160 LGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALR 218 L G+E+ A +IA A++K R+ PF ++ L L+ T+ + + HPA R+FQALR Sbjct: 184 LKTYGDERFAGKIASAVLKEREKEPFSNSERLVELLYATIPAATRRTGGHPAKRTFQALR 243 Query: 219 IFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPS 278 + VN E+E + Q + AL GG + +S+ SLEDR VK+ FA + + Sbjct: 244 VEVNRELEAIEQVIPVITDALHVGGRAVFMSYQSLEDRTVKQAFAELAASKTPAGLPMDL 303 Query: 279 NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDDSFVHLPR 332 F+++T+ + E++ N R+ S ++RA R +E + +H P Sbjct: 304 PGTAPKFKTVTRGAEKASAEEIEENSRAASVRVRAIER-----LEGEPHLHPPG 352 >gi|28373611|pdb|1M6Y|A Chain A, Crystal Structure Analysis Of Tm0872, A Putative Sam- Dependent Methyltransferase, Complexed With Sah gi|28373612|pdb|1M6Y|B Chain B, Crystal Structure Analysis Of Tm0872, A Putative Sam- Dependent Methyltransferase, Complexed With Sah gi|28373847|pdb|1N2X|A Chain A, Crystal Structure Analysis Of Tm0872, A Putative Sam- Dependent Methyltransferase, Complexed With Sam gi|28373848|pdb|1N2X|B Chain B, Crystal Structure Analysis Of Tm0872, A Putative Sam- Dependent Methyltransferase, Complexed With Sam Length = 301 Score = 321 bits (823), Expect = 1e-85, Method: Composition-based stats. Identities = 111/309 (35%), Positives = 177/309 (57%), Gaps = 29/309 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77 H+PV + +VI L P K+ILD T G GG+SR+ + G +I +D D + +E Sbjct: 10 HIPVXVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEK 69 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++++ ++ SLF+ ++ + + G VDG++ DLGVS+ Q+ +RGF+F++ PLD Sbjct: 70 LKEFSDRVSLFKVSYREADFLLKTLGIEKVDGILXDLGVSTYQLKGENRGFTFEREEPLD 129 Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEK-QASRIAHAIVKRRQSAPFQTTQDLS 192 R S ++A V+N+ ++L RI+ GEEK A RIA IV+ R P TT DL Sbjct: 130 XRXDLESEVTAQKVLNELPEEELARIIFEYGEEKRFARRIARKIVENR---PLNTTLDLV 186 Query: 193 SLIQKTVYFS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 +++ + + + H AT++FQA+RI+VN E+E L + L+ AE L GG ++V+SF Sbjct: 187 KAVREALPSYEIRRRKRHFATKTFQAIRIYVNRELENLKEFLKKAEDLLNPGGRIVVISF 246 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDR+VK+ F + + +T+K V P++E++ N R+RS + Sbjct: 247 HSLEDRIVKETFRNSKK-----------------LRILTEKPVRPSEEEIRENPRARSGR 289 Query: 311 LRAGMRTVE 319 LRA R E Sbjct: 290 LRAAERIEE 298 >gi|168702508|ref|ZP_02734785.1| methyltransferase [Gemmata obscuriglobus UQM 2246] Length = 293 Score = 321 bits (823), Expect = 1e-85, Method: Composition-based stats. Identities = 117/305 (38%), Positives = 166/305 (54%), Gaps = 28/305 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HV VL + +ALL+P P + +D T G G++R + V+ALD+DP ++ + Sbjct: 9 HVSVLPAETLALLDPRPDETWVDCTTGGAGHTRLIAERVGPAGRVLALDQDPTMLALARP 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + L A F QL + + +G VDGV+ DLG SS Q+ RG SF+ GPL Sbjct: 69 LVAGLP--VELVHANFDQLAEVLAARGIAAVDGVLADLGFSSDQLAERARGLSFRDDGPL 126 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMR+ SG +A+D+VN + L + GEE+ + R+A IV RR PF TT DL+ Sbjct: 127 DMRLDPTSGSTAADMVNSLSEGALADVFWEYGEERHSRRVAKKIVARRAERPFATTADLA 186 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 S+++ V ++ I PATR FQALRI VN+E+ L + L +K+GG + ++SFHS Sbjct: 187 SVVRSCVP--RSGSIDPATRVFQALRIAVNDELGSLDRLLAVLPTVVKSGGRVGIISFHS 244 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR VK + V++ +TKK V E+VA N R+RSAKLR Sbjct: 245 LEDRRVKHVLRT-----------------EGVWRPLTKKPVEAGDEEVARNPRARSAKLR 287 Query: 313 AGMRT 317 A R Sbjct: 288 AATRI 292 >gi|293192321|ref|ZP_06609432.1| S-adenosyl-methyltransferase MraW [Actinomyces odontolyticus F0309] gi|292820236|gb|EFF79230.1| S-adenosyl-methyltransferase MraW [Actinomyces odontolyticus F0309] Length = 335 Score = 321 bits (823), Expect = 1e-85, Method: Composition-based stats. Identities = 113/325 (34%), Positives = 170/325 (52%), Gaps = 12/325 (3%) Query: 7 KTMSSAIHHTIGDHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKM--GSNV 61 + + + HVPVLL + + +L P PG V++D T G GG++ + G V Sbjct: 6 EPVRDSSRPASERHVPVLLRECLDMLAPAIKRPGAVLVDGTLGMGGHTEGALERFEGLTV 65 Query: 62 IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSM 116 I +DRDP A+ + + +F T+ + V ++ VDGV+ DLGVSS+ Sbjct: 66 IGIDRDPQAIELASARLERFGTRFRAVHTTYDNIDVAVEEQLGTGARVDGVLMDLGVSSL 125 Query: 117 QIDCGDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175 Q+D DRGF++ K PLDMRM SG SA+D++ ++ +L RIL GEEK A RIA Sbjct: 126 QLDEADRGFAYSKDAPLDMRMDATSGQSAADLLATSSEGELIRILRTYGEEKFAPRIARL 185 Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234 I++RR AP T +L +I++ + ++ +PA R+FQALR+ VN+E+ L + L Sbjct: 186 IIRRRDDAPITRTGELVDIIREAIPAPARRTGGNPAKRTFQALRVAVNDELTILERALPR 245 Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVV 294 A +L+ GG L+V S+ SLEDR+VK S + + + +TK Sbjct: 246 ALSSLRVGGRLVVESYQSLEDRIVKDVLRCGSTSAAPPGLPVVPDEMAPSLRLLTKGANK 305 Query: 295 PTQEDVAFNRRSRSAKLRAGMRTVE 319 Q + N RS S +LR E Sbjct: 306 ADQAEQDHNPRSASVRLRGAELIRE 330 >gi|15645330|ref|NP_207501.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori 26695] gi|8134812|sp|O25411|RSMH_HELPY RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|2313835|gb|AAD07761.1| conserved hypothetical protein [Helicobacter pylori 26695] Length = 308 Score = 321 bits (823), Expect = 1e-85, Method: Composition-based stats. Identities = 112/304 (36%), Positives = 174/304 (57%), Gaps = 14/304 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 H VLL++V+ P V++D T G GG+S++ ++ I +D+D FA +E Sbjct: 8 HQSVLLQEVLQAFMPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFAQEIAKER 67 Query: 78 MRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++ ++ +++L F++ ++ + + GV+ DLGVSS+Q+D +RGF+F S LD Sbjct: 68 LKAFEGRYNLLSGGFAKRFKEALETHNKEIKGVLVDLGVSSLQLDDDNRGFNF-HSHTLD 126 Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM S ++A V+N + L +I GE K+ +IAH I +RR PF+ +DLS Sbjct: 127 MRMDLESELNAQKVINSYPIVALEKIFRDYGEIKEYKKIAHKIAERRAKKPFKNAKDLSE 186 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 + FSKN +IHPAT FQA+RI VN+E+EEL + L+ A G +L V+SFHSL Sbjct: 187 FLSS---FSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCARNL--KGAILCVISFHSL 241 Query: 254 EDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 ED LVK F + + + + A+ + +TKK + P+ E++ NRRSRSAK+ Sbjct: 242 EDALVKNAFKDYAKNCICDPSSFKCACSNNHALGEILTKKPITPSPEEIKNNRRSRSAKM 301 Query: 312 RAGM 315 R Sbjct: 302 RVFQ 305 >gi|284030811|ref|YP_003380742.1| S-adenosyl-methyltransferase MraW [Kribbella flavida DSM 17836] gi|283810104|gb|ADB31943.1| S-adenosyl-methyltransferase MraW [Kribbella flavida DSM 17836] Length = 324 Score = 321 bits (823), Expect = 1e-85, Method: Composition-based stats. Identities = 117/295 (39%), Positives = 179/295 (60%), Gaps = 10/295 (3%) Query: 20 HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74 HVPV+L++V+ALL P PG V++DAT G GG+S +F + + +I LDRDP A+ Sbjct: 10 HVPVMLDRVVALLAPALQQPGSVLVDATLGLGGHSEAFLQRCPEARLIGLDRDPAALRLA 69 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 E + Y + +L A + +L + + GV DG++FDLGVSSMQ+D DRGF++ + Sbjct: 70 GERLAPYAGRTTLVHAVYDELPRVLDELGVPAIDGILFDLGVSSMQLDEADRGFAYAQDA 129 Query: 132 PLDMRMSCSGIS-ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + + A+DV+N + DL RIL GEEK A +IA IV+ R++ PF + Sbjct: 130 PLDMRMDPTAPTTAADVLNTYSAADLARILFQYGEEKFARKIADRIVRARETEPFSHSAR 189 Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 LS L++ + ++ HPA R+FQALRI VN+E++ L + L +A AL G ++V+S Sbjct: 190 LSELVRDAIPQAARRTGGHPAKRTFQALRIEVNSELDVLRRALPAALGALALHGRIVVMS 249 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 +HSLEDR+ K+ A+ + + + H + +T+ PT+++VA N Sbjct: 250 YHSLEDRITKQTLAAATRSDVPDDLPVIPAGHEPYLKLLTRGAERPTEDEVAENP 304 >gi|121611471|ref|YP_999278.1| S-adenosyl-methyltransferase MraW [Verminephrobacter eiseniae EF01-2] gi|263504490|sp|A1WRK3|RSMH_VEREI RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|121556111|gb|ABM60260.1| S-adenosyl-methyltransferase MraW [Verminephrobacter eiseniae EF01-2] Length = 334 Score = 321 bits (823), Expect = 1e-85, Method: Composition-based stats. Identities = 131/324 (40%), Positives = 177/324 (54%), Gaps = 22/324 (6%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALL----NPAPGKVILDATFGAGGYSRSFCKMGS---NV 61 MSSA H VL E + L PAP +DATFG GG++R + Sbjct: 1 MSSAPC-----HTTVLREPAVDALLARAGPAPAGTWVDATFGRGGHTRLILCRLGPQGRL 55 Query: 62 IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCG 121 +A D+DP A++ R +FS+ F QL +P + GV+ DLGVSS QID Sbjct: 56 VAFDKDPEAIAEAM---RITDARFSIRHQGFGQLGQ-LPAGSLAGVLMDLGVSSPQIDSP 111 Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF+ GPLDMRM + G+SA+D + A+ + ++L GEE+ A IA AIV RR Sbjct: 112 ERGFSFRFDGPLDMRMDTTRGLSAADWLATADAGQIAQVLRDYGEERFAGLIAKAIVARR 171 Query: 181 Q-SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 Q P T +L+ L+ V + + +PATR+FQALRIF+N E+EEL Q L ++ L Sbjct: 172 QARGPLARTAELADLVAGAVKTREPGQ-NPATRTFQALRIFINAELEELQQALAASLLVL 230 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 + GG L+V+SFHSLEDR+VK+F A S + R A P Q + V P + Sbjct: 231 QPGGRLVVLSFHSLEDRIVKQFIARHSRQPFDRRVPF---AAPQAMQLLALARVRPDAAE 287 Query: 300 VAFNRRSRSAKLRAGMRTVERSIE 323 VA N R+RSA +R RT E Sbjct: 288 VAANPRARSAIMRVAERTQAHGAE 311 >gi|213965216|ref|ZP_03393413.1| S-adenosyl-methyltransferase MraW [Corynebacterium amycolatum SK46] gi|213952068|gb|EEB63453.1| S-adenosyl-methyltransferase MraW [Corynebacterium amycolatum SK46] Length = 346 Score = 320 bits (822), Expect = 1e-85, Method: Composition-based stats. Identities = 111/329 (33%), Positives = 165/329 (50%), Gaps = 29/329 (8%) Query: 20 HVPVLLEKVIALLNPA-----PGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVS 72 HVPVLL +V LL P V++D T GAGG++ + + + LDRD A+ Sbjct: 17 HVPVLLHRVTDLLRPGIEALGDDAVVVDGTLGAGGHTEYLLEQFPKLCVVGLDRDDNALR 76 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYV--------------------PDKGVDGVVFDLG 112 +E + + +F F+ F L + + KG+ G +FDLG Sbjct: 77 GAEERLARFGNRFVAFRVRFDSLAEVLSGEIPAAAGGSGAENILARAAGKGIAGALFDLG 136 Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASR 171 VSSMQ+D +RGF+++ PLDMRM S GI+A+DV+N + D+ RIL G+E+ A + Sbjct: 137 VSSMQLDQVNRGFAYRVDAPLDMRMDASQGITAADVLNTYSHGDIARILSTYGDERFAGK 196 Query: 172 IAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQ 230 IA AI++ R+ PF + L L+ +T+ + + HPA R+FQALRI VN E+E L Sbjct: 197 IASAILREREKEPFTNSGRLVELLYETIPAASRRKGGHPAKRTFQALRIEVNRELEALEN 256 Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK 290 L AL G + +S+ SLEDR+VKK F R + H F IT+ Sbjct: 257 VLPQVCDALAVDGRAVFMSYQSLEDRIVKKDFVERVKSTTPPGLPMELPGHEPHFALITR 316 Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319 + ++ N R+ ++R R Sbjct: 317 GAEKASASEIEDNPRAAPVRVRCIERIRA 345 >gi|297379907|gb|ADI34794.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori v225d] Length = 308 Score = 320 bits (822), Expect = 1e-85, Method: Composition-based stats. Identities = 112/304 (36%), Positives = 172/304 (56%), Gaps = 14/304 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H VLL++V+ P V++D T G GG+S++ + +I +D+D FA +E Sbjct: 8 HQSVLLQEVLQAFAPLEEGVLIDCTLGLGGHSKAILSQKPHLKLIGIDKDKFAQEIAKER 67 Query: 78 MRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++ ++ +++L F++ ++ + + GV+ DLGVSS+Q+D +RGF+F S LD Sbjct: 68 LKAFEGRYNLLSGGFAKRFKEALETHDKEIKGVLVDLGVSSLQLDDDNRGFNF-HSHALD 126 Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM G ++A V+N V L +I GE K+ +IAH I +RR PF+ +DLS Sbjct: 127 MRMDLEGDLNAQKVINSYPVVALEKIFKDYGEIKEYKKIAHKIAERRAKKPFKDAKDLSD 186 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 + SKN +IHPAT FQA+RI VN E+EEL + L+ A G +L V+SFHSL Sbjct: 187 FLSS---LSKNKKIHPATLVFQAVRIEVNRELEELKEFLQCARNL--KGAILCVISFHSL 241 Query: 254 EDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 ED LVK F + + + + A+ + +TKK + P+ E++ NRRSRSAK+ Sbjct: 242 EDALVKNAFKDYAKNCVCDPSSFKCACSNNHALGEILTKKPITPSPEEIKNNRRSRSAKM 301 Query: 312 RAGM 315 R Sbjct: 302 RVFQ 305 >gi|317012519|gb|ADU83127.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori Lithuania75] Length = 308 Score = 320 bits (822), Expect = 1e-85, Method: Composition-based stats. Identities = 113/304 (37%), Positives = 175/304 (57%), Gaps = 14/304 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 H VLL++V+ P V++D T G GG+S++ ++ I +D+D FA +E Sbjct: 8 HQSVLLQEVLQAFTPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFAQKIAKER 67 Query: 78 MRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++ ++ +++L F++ ++ + + GV+ DLGVSS+Q+D +RGF+F S LD Sbjct: 68 LKAFEGRYNLLSGGFAKRFKEALETHNKEIKGVLVDLGVSSLQLDDDNRGFNF-HSHTLD 126 Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM S ++A V+N +V L +I GE K+ +IAH I +RR PF+ +DLS Sbjct: 127 MRMDLESDLNAQKVINSYSVVALEKIFRDYGEIKEYKKIAHKIAERRAKKPFKDAKDLSD 186 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 + FSKN +IHPAT FQA+RI VN+E+EEL + L+ A G +L V+SFHSL Sbjct: 187 FLSS---FSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCARNL--KGAILCVISFHSL 241 Query: 254 EDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 ED LVK F + + + + A+ + +TKK + P+ E++ NRRSRSAK+ Sbjct: 242 EDALVKNAFKDYAKNCICDPSSFKCACSNNHALGEILTKKPITPSPEEIKNNRRSRSAKM 301 Query: 312 RAGM 315 R Sbjct: 302 RVFQ 305 >gi|313681992|ref|YP_004059730.1| s-adenosyl-methyltransferase mraw [Sulfuricurvum kujiense DSM 16994] gi|313154852|gb|ADR33530.1| S-adenosyl-methyltransferase MraW [Sulfuricurvum kujiense DSM 16994] Length = 307 Score = 320 bits (822), Expect = 1e-85, Method: Composition-based stats. Identities = 101/305 (33%), Positives = 166/305 (54%), Gaps = 14/305 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQE 76 H+PVL +VI +P +++D T G GG+S + ++I +D+DP A++ + Sbjct: 5 PHIPVLYREVIEAFSPCKEGIVIDCTMGYGGHSSLLLENNPALSLIGIDQDPTAIAFSSK 64 Query: 77 TMRDYKEQFSLFQATFSQLQ-DYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + + + + FS++ D + +KG + G++ D+GVSS+Q+D +RGFS++ L Sbjct: 65 RLEPFGNRVEIRRGRFSEVARDAIEEKGEKICGILADIGVSSLQLDQRERGFSYESD-TL 123 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +SA +VVN + L IL GE A ++A IV+RR PF + ++LS Sbjct: 124 DMRMNPDAPLSAGEVVNDYSQGALETILREYGEVTNARKVAETIVQRR---PFSSAKELS 180 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 + I + K +IHP+T QA+RI VN+E+ EL + L + E + + +++FHS Sbjct: 181 NAIFHLMP--KGKKIHPSTLVMQAIRIEVNDELGELTRLLDAIEASKLKHLRVAIITFHS 238 Query: 253 LEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 LEDR+VK F + A+ + ITKK + +++ N RSRSAK Sbjct: 239 LEDRIVKNRFTKWGKNCICPDDAMRCTCGNKNAIGKIITKKPLSAQDDELRANSRSRSAK 298 Query: 311 LRAGM 315 LR Sbjct: 299 LRIFE 303 >gi|154509049|ref|ZP_02044691.1| hypothetical protein ACTODO_01566 [Actinomyces odontolyticus ATCC 17982] gi|153798683|gb|EDN81103.1| hypothetical protein ACTODO_01566 [Actinomyces odontolyticus ATCC 17982] Length = 335 Score = 320 bits (822), Expect = 1e-85, Method: Composition-based stats. Identities = 113/325 (34%), Positives = 170/325 (52%), Gaps = 12/325 (3%) Query: 7 KTMSSAIHHTIGDHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKM--GSNV 61 + + + HVPVLL + + +L P PG V++D T G GG++ + G V Sbjct: 6 EPVRDSSRPASERHVPVLLRECLDMLAPAIKRPGAVLVDGTLGMGGHTEGALERFEGLTV 65 Query: 62 IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSM 116 I +DRDP A+ + + +F T+ + V ++ VDGV+ DLGVSS+ Sbjct: 66 IGIDRDPQAIELASARLERFGTRFRAVHTTYDNIDVAVEEQLGTGARVDGVLMDLGVSSL 125 Query: 117 QIDCGDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175 Q+D DRGF++ K PLDMRM SG SA+D++ ++ +L RIL GEEK A RIA Sbjct: 126 QLDEADRGFAYSKDAPLDMRMDATSGQSAADLLATSSEGELIRILRTYGEEKFAPRIARL 185 Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234 I++RR AP T +L +I++ + ++ +PA R+FQALR+ VN+E+ L + L Sbjct: 186 IIRRRDDAPITRTGELVGIIREAIPAPARRTGGNPAKRTFQALRVAVNDELTILERALPR 245 Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVV 294 A +L+ GG L+V S+ SLEDR+VK S + + + +TK Sbjct: 246 ALSSLRVGGRLVVESYQSLEDRIVKDVLRRGSTSAAPPGLPVIPDEMAPSLRLLTKGANK 305 Query: 295 PTQEDVAFNRRSRSAKLRAGMRTVE 319 Q + N RS S +LR E Sbjct: 306 ADQAEQDHNPRSASVRLRGAELIRE 330 >gi|217034743|ref|ZP_03440143.1| hypothetical protein HP9810_898g11 [Helicobacter pylori 98-10] gi|216942736|gb|EEC22294.1| hypothetical protein HP9810_898g11 [Helicobacter pylori 98-10] Length = 324 Score = 320 bits (822), Expect = 1e-85, Method: Composition-based stats. Identities = 112/304 (36%), Positives = 173/304 (56%), Gaps = 14/304 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 H VLL++V+ P V++D T G GG+S++ ++ I +D+D FA +E Sbjct: 24 HQSVLLQEVLQAFAPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFAQEIAKER 83 Query: 78 MRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++ ++ +++L F++ ++ + + GV+ DLGVSS+Q+D +RGF+F S LD Sbjct: 84 LKAFEGRYNLLSGGFAKRFKEALETHDKEIKGVLVDLGVSSLQLDDDNRGFNF-HSHALD 142 Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM+ G ++A V+N V L +I GE K+ +IAH I +RR PF+ +DLS Sbjct: 143 MRMNLEGDLNAQKVINSYPVVALEKIFRDYGEIKEYKKIAHKIAERRAKKPFKDAKDLSD 202 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 + SKN +IHPAT FQA+RI VN E+EEL + L+ A G +L V+SFHSL Sbjct: 203 FLSS---LSKNKKIHPATLVFQAVRIEVNRELEELKEFLQCARNL--KGAILCVISFHSL 257 Query: 254 EDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 ED LVK F + + + + A+ + +TKK + P+ E++ NRRSRSAK+ Sbjct: 258 EDSLVKNAFKDYAKNCICDPLSFKCTCSNNHALGEILTKKPITPSPEEIKNNRRSRSAKM 317 Query: 312 RAGM 315 R Sbjct: 318 RVFQ 321 >gi|157414980|ref|YP_001482236.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp. jejuni 81116] gi|263445755|sp|A8FLC2|RSMH_CAMJ8 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|157385944|gb|ABV52259.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp. jejuni 81116] gi|307747617|gb|ADN90887.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Campylobacter jejuni subsp. jejuni M1] gi|315931891|gb|EFV10846.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp. jejuni 327] Length = 310 Score = 320 bits (822), Expect = 1e-85, Method: Composition-based stats. Identities = 100/302 (33%), Positives = 159/302 (52%), Gaps = 9/302 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76 H+PVLL +V + LD T G GG+S + K ++ IA D+D A+ ++ Sbjct: 4 PHIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKNHPDLKFIACDQDQQALEFSKK 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVP-DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 ++D+ + + Q+ FS++ + + + + G++ D+GVSS Q+D +RGFS LDM Sbjct: 64 RLKDFHNRITFIQSNFSEVLEKISYKEELRGILADIGVSSFQLDNNERGFSVNSD-FLDM 122 Query: 136 RMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM+ S ISA +++N + LT I GE A IA I R P ++ ++L + Sbjct: 123 RMNQNSKISAYEIINTYTKEQLTSIFKDYGELHDAHFIAEKICLERSKNPIKSAKELYQI 182 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 I K + +I AT +FQA+RI VN E++ L L E +L ++SFHSLE Sbjct: 183 IGK--GKQNHRKISKATLAFQAIRIEVNQELKVLKDFLGHLENLKPKNCILAIISFHSLE 240 Query: 255 DRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 DR+VK FF S + + + ++ Q ITKK + ++E++ N RS AK+R Sbjct: 241 DRIVKNFFKKWSKNCICDEKIMRCECGNNHSLGQIITKKAISASKEELLKNSRSSCAKMR 300 Query: 313 AG 314 A Sbjct: 301 AF 302 >gi|86151694|ref|ZP_01069908.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp. jejuni 260.94] gi|315124195|ref|YP_004066199.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85841323|gb|EAQ58571.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp. jejuni 260.94] gi|315017917|gb|ADT66010.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 310 Score = 320 bits (822), Expect = 2e-85, Method: Composition-based stats. Identities = 101/302 (33%), Positives = 158/302 (52%), Gaps = 9/302 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76 H+PVLL +V + LD T G GG+S + K ++ IA D+D A+ ++ Sbjct: 4 PHIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKNHPDLKFIACDQDQQALEFSKK 63 Query: 77 TMRDYKEQFSLFQATFSQ-LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 ++D+ + + Q+ FS+ L+ + + G++ D+GVSS Q+D +RGFS LDM Sbjct: 64 RLKDFHNRITFVQSNFSEVLEKISHKEELRGILADIGVSSFQLDNNERGFSVNSD-FLDM 122 Query: 136 RMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM+ S ISA +++N + LT I GE A IA I R P ++ ++L + Sbjct: 123 RMNQNSKISAYEIINTYTKEQLTSIFKDYGELHDAHFIAEKICLERSKNPIKSAKELYQI 182 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 I K + +I AT +FQA+RI VN E++ L L E +L ++SFHSLE Sbjct: 183 IGK--GKQNHRKISKATLAFQAIRIEVNQELKVLKDFLGHLENLKPKNCILAIISFHSLE 240 Query: 255 DRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 DR+VK FF S + + + ++ Q ITKK + ++E++ N RS AK+R Sbjct: 241 DRIVKNFFKKWSKNCICDEKIMRCECGNNHSLGQIITKKAISASKEELLKNSRSSCAKMR 300 Query: 313 AG 314 A Sbjct: 301 AF 302 >gi|296134857|ref|YP_003642099.1| S-adenosyl-methyltransferase MraW [Thiomonas intermedia K12] gi|295794979|gb|ADG29769.1| S-adenosyl-methyltransferase MraW [Thiomonas intermedia K12] Length = 311 Score = 320 bits (822), Expect = 2e-85, Method: Composition-based stats. Identities = 118/315 (37%), Positives = 171/315 (54%), Gaps = 14/315 (4%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69 + H VLL + + L P V LDATFG GG+SR + +IA+DRDP Sbjct: 1 MPSAESAHRTVLLHEAVDQLITNPDGVYLDATFGRGGHSREILRRLSPAGRLIAIDRDPQ 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFS 126 A+ + + +F + A FS+ + ++GV DG++FDLGVSS Q+D +RGFS Sbjct: 61 AIEAAAQI---HDARFVIKHAPFSEFARVLHEQGVAQADGLLFDLGVSSPQLDQPERGFS 117 Query: 127 FQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR-QSAP 184 F+ GPLDMRM SG + ++ + A+V ++ +L G+E+ A +IA IV RR AP Sbjct: 118 FRADGPLDMRMDNSSGQTVAEYLATASVDEIATVLRDYGDERAAVQIAKKIVARRDAGAP 177 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 + +L++L+ V + + PATR+FQALRI VN E+ ++ L L+ GG Sbjct: 178 LARSGELAALVASAVKSREPGQ-DPATRTFQALRIHVNAELAQIETALSQVLDCLRPGGR 236 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV--VPTQEDVAF 302 L V+SFHSLED L+K+F + R A FQ K+VV P+ +++ Sbjct: 237 LAVISFHSLEDALIKRFIHRHARAPAVDRRQPFVPGVSAEFQPQLKEVVRMRPSAAEISG 296 Query: 303 NRRSRSAKLRAGMRT 317 N RSRSA LR R Sbjct: 297 NARSRSAMLRVAQRV 311 >gi|208434621|ref|YP_002266287.1| hypothetical protein HPG27_664 [Helicobacter pylori G27] gi|226709921|sp|B5Z772|RSMH_HELPG RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|208432550|gb|ACI27421.1| hypothetical protein HPG27_664 [Helicobacter pylori G27] Length = 308 Score = 320 bits (822), Expect = 2e-85, Method: Composition-based stats. Identities = 114/311 (36%), Positives = 175/311 (56%), Gaps = 14/311 (4%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70 + H VLL++V+ P V++D T G GG+S++ + +I +D+D FA Sbjct: 1 MQEIENLHQSVLLQEVLQAFTPLEEGVLVDCTLGLGGHSKALLSQKPHLKLIGIDKDKFA 60 Query: 71 VSCGQETMRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSF 127 +E ++ ++ +++L F++ ++ + G + GV+ DLGVSS+Q+D +RGF+F Sbjct: 61 QEIAKERLKAFEGRYNLLSGGFAKRFKEALEIHGDRIKGVLVDLGVSSLQLDDDNRGFNF 120 Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 S LDMRM S ++A V+N V L +I GE K+ +IAH I +RR PF+ Sbjct: 121 -HSHALDMRMDLESDLNAQKVINSYPVIALEKIFRDYGEIKEYKKIAHKIAERRAKKPFK 179 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 +DLS + FSKN +IHPAT FQA+RI VN+E+EEL + L+ A G +L Sbjct: 180 DAKDLSDFLSS---FSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCARNL--NGAILC 234 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 V+SFHSLED LVK F + + + + A+ +TKK + P+ E++ NR Sbjct: 235 VISFHSLEDGLVKNAFKDYAKNCICDPLSFQCTCSNNHALGAILTKKPITPSPEEIKNNR 294 Query: 305 RSRSAKLRAGM 315 RSRSAK+R Sbjct: 295 RSRSAKMRVFQ 305 >gi|66809695|ref|XP_638570.1| hypothetical protein DDB_G0284343 [Dictyostelium discoideum AX4] gi|60467186|gb|EAL65220.1| hypothetical protein DDB_G0284343 [Dictyostelium discoideum AX4] Length = 367 Score = 320 bits (821), Expect = 2e-85, Method: Composition-based stats. Identities = 112/320 (35%), Positives = 182/320 (56%), Gaps = 23/320 (7%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAV 71 + + H PV +++V+ +LNP P KV +DATFG GG+SR + VIA DRDP Sbjct: 53 YESYKIHKPVFIKEVLEILNPQPNKVYIDATFGMGGHSRGILETCKDCYVIAFDRDPKVF 112 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD-----GVVFDLGVSSMQIDCGDRGFS 126 + ++K++ +TFS ++ + +K +D G+++D GVSS QID DRGFS Sbjct: 113 EMTKPLRSEFKDRLITINSTFSSMRSALKEKNLDHLKISGILYDFGVSSYQIDTADRGFS 172 Query: 127 FQKS--GPLDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 F+K GPLDMRM+ + I+A D++N + KDL I GEEK IA+ I+++R+ Sbjct: 173 FKKELEGPLDMRMNQNSSQITAYDIINTFSEKDLRDIFFYYGEEKHTKNIANEILRKRKI 232 Query: 183 APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 P + T DL +++ ++ + + +R F++LR+FVN+E+ E+ GL E+ L+ Sbjct: 233 EPIKNTSDLVKIVESSIPYPMA--LKTISRVFRSLRMFVNDELNEIKIGLTQGEQLLEPN 290 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 L+ +SFHS+EDR+VK++ + P+ K + P++E++ + Sbjct: 291 SPLLAISFHSIEDRIVKQYLNKYTTIEEPTFKFSPT----------YKSPIFPSKEELEW 340 Query: 303 NRRSRSAKLRAGMRTVERSI 322 N RS+SA LR +RT + I Sbjct: 341 NPRSKSAILRTAIRTSNKPI 360 >gi|184201136|ref|YP_001855343.1| S-adenosyl-methyltransferase MraW [Kocuria rhizophila DC2201] gi|263456204|sp|B2GJQ6|RSMH_KOCRD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|183581366|dbj|BAG29837.1| methyltransferase MraW [Kocuria rhizophila DC2201] Length = 327 Score = 320 bits (821), Expect = 2e-85, Method: Composition-based stats. Identities = 112/317 (35%), Positives = 179/317 (56%), Gaps = 10/317 (3%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCG 74 HVPVLL++ + LL PA V+LDAT G GG++ + + ++ + +DRDP A+ Sbjct: 10 HVPVLLDRCLDLLAPALDTEAPVVLDATLGMGGHTHAMLERFPHLRVVGIDRDPQALELA 69 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++ + +F+ T+ + D GV DGV+FDLGVSS+Q+D +RGF++ Sbjct: 70 GRRLQRFGSRFASIHTTYDHIADAAAAAGVERVDGVLFDLGVSSLQLDERERGFAYSFDA 129 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + +SA VVN+ + L I+ GE++ A RIA AIV R AP +TT Sbjct: 130 PLDMRMDSRAELSAYTVVNEYSEARLRDIIFRWGEDRFAPRIARAIVAARADAPLRTTAQ 189 Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L ++ V + ++ + HPA ++FQALRI VN E++ L + + +A + ++ GG +I +S Sbjct: 190 LVDAVRSAVPAAAQHKKGHPAKQTFQALRIEVNEELDVLERAIPAAVETVRVGGRVIAMS 249 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 +HSLEDR+VK+ FA + + H V + +T+ +++ N R+ SA Sbjct: 250 YHSLEDRIVKQEFARGARSTAPRGFPVELPEHQPVLKVLTRGAERADEQETLENPRAASA 309 Query: 310 KLRAGMRTVERSIEDDS 326 +LRA R E + + Sbjct: 310 RLRAVERLRETTTPGSA 326 >gi|78187960|ref|YP_376003.1| methyltransferase [Chlorobium luteolum DSM 273] gi|123582409|sp|Q3B121|RSMH_PELLD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|78167862|gb|ABB24960.1| methyltransferase [Chlorobium luteolum DSM 273] Length = 327 Score = 320 bits (821), Expect = 2e-85, Method: Composition-based stats. Identities = 104/317 (32%), Positives = 170/317 (53%), Gaps = 21/317 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--------GSNVIALDRDPFAV 71 H PVLL + + L P + +D T G GG+S + + GS ++ +D+D A+ Sbjct: 9 HDPVLLHECVDALVRGP-GLYVDGTLGGGGHSMAILRALESGGWLEGSLLVGIDQDDEAL 67 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD--------GVVFDLGVSSMQIDCGDR 123 + Y + + F + + V ++ DLGVSS QID +R Sbjct: 68 HEAGSRLAAYPGRAVAVKGNFQDIARLASREAVQKGLEPRARAILLDLGVSSRQIDRAER 127 Query: 124 GFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR-Q 181 GFS+ ++GPLDMRM S +A+D++N A+ ++L I GEE ++ IA A++ R + Sbjct: 128 GFSYMRTGPLDMRMDSSASTTAADILNDADERELAAIFFRYGEEPRSRAIARAVIAARMK 187 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 P +T+DL+ +++ V+ + + I +R FQALRI VN E++ L + L L Sbjct: 188 HGPLSSTEDLADIVRSVVHGRQPS-IRSLSRVFQALRIAVNRELDVLQRVLEDGVSVLDE 246 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDV 300 GG + V+S+HSLEDR+VK++FA++S + + + +T+K VV ++++V Sbjct: 247 GGRIAVISYHSLEDRMVKQYFAAQSKCDWGPKGVGLREPLSRGTLVPVTRKAVVASEDEV 306 Query: 301 AFNRRSRSAKLRAGMRT 317 N RSRSAKLR +T Sbjct: 307 RVNPRSRSAKLRVAEKT 323 >gi|283953941|ref|ZP_06371470.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp. jejuni 414] gi|283794546|gb|EFC33286.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp. jejuni 414] Length = 309 Score = 320 bits (821), Expect = 2e-85, Method: Composition-based stats. Identities = 97/302 (32%), Positives = 157/302 (51%), Gaps = 9/302 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76 H+PVLL +V + LD T G GG+S + K N+ IA D+D A+ ++ Sbjct: 4 PHIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKNHPNLKFIACDQDQQALEFSKK 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYV-PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + + ++ + Q+ F ++ + + + + G++ D+GVSS Q+D +RGFS LDM Sbjct: 64 RLEHFHDRITFIQSNFGEILEKISHKEDLRGILADIGVSSFQLDNNERGFSLNSD-FLDM 122 Query: 136 RMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM+ S ISA ++VN + LT I GE A IA I R P ++ ++L + Sbjct: 123 RMNQNSKISAYEIVNTYTKEQLTSIFKEYGELHDAHFIAEKICLARNKNPIKSAKELCQI 182 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 I K+ + +I AT FQA+RI VN E++ L + E +L +++FHSLE Sbjct: 183 IGKS--KQNHRKISKATLVFQAIRIEVNQELKVLKDFFKYLENLKPKNCILAIINFHSLE 240 Query: 255 DRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 DR+VK FF + + + + ++ Q ITKK + ++E++ N RS AK+R Sbjct: 241 DRIVKNFFKKWAKNCICDEKIMRCECGNNHSLGQIITKKAISASKEELLKNSRSSCAKMR 300 Query: 313 AG 314 A Sbjct: 301 AF 302 >gi|23335461|ref|ZP_00120697.1| COG0275: Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Bifidobacterium longum DJO10A] gi|23465877|ref|NP_696480.1| S-adenosyl-methyltransferase MraW [Bifidobacterium longum NCC2705] gi|189439036|ref|YP_001954117.1| S-adenosyl-methyltransferase MraW [Bifidobacterium longum DJO10A] gi|227547548|ref|ZP_03977597.1| S-adenosyl-methyltransferase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239621159|ref|ZP_04664190.1| S-adenosyl-methyltransferase [Bifidobacterium longum subsp. infantis CCUG 52486] gi|312132476|ref|YP_003999815.1| s-adenosylmethionine-dependent membrane protein [Bifidobacterium longum subsp. longum BBMN68] gi|322689514|ref|YP_004209248.1| S-adenosyl-methyltransferase [Bifidobacterium longum subsp. infantis 157F] gi|322691469|ref|YP_004221039.1| S-adenosyl-methyltransferase [Bifidobacterium longum subsp. longum JCM 1217] gi|42558985|sp|Q8G4R0|RSMH_BIFLO RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263445917|sp|B3DQM3|RSMH_BIFLD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|23326579|gb|AAN25116.1| widely conserved hypothetical protein in upf0117 [Bifidobacterium longum NCC2705] gi|189427471|gb|ACD97619.1| Putative S-adenosylmethionine-dependent membrane protein [Bifidobacterium longum DJO10A] gi|227211958|gb|EEI79854.1| S-adenosyl-methyltransferase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239515620|gb|EEQ55487.1| S-adenosyl-methyltransferase [Bifidobacterium longum subsp. infantis CCUG 52486] gi|311773403|gb|ADQ02891.1| Putative S-adenosylmethionine-dependent Membrane protein [Bifidobacterium longum subsp. longum BBMN68] gi|320456325|dbj|BAJ66947.1| S-adenosyl-methyltransferase [Bifidobacterium longum subsp. longum JCM 1217] gi|320460850|dbj|BAJ71470.1| S-adenosyl-methyltransferase [Bifidobacterium longum subsp. infantis 157F] Length = 359 Score = 320 bits (821), Expect = 2e-85, Method: Composition-based stats. Identities = 113/307 (36%), Positives = 160/307 (52%), Gaps = 11/307 (3%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 H+PVLL+ + L+ PA + +D T G G+S +F K +I +DRD A+ Sbjct: 8 HLPVLLDDCVNLMAPALEHENAIAVDCTLGLAGHSIAFLKAAPQARLIGIDRDSEALGLA 67 Query: 75 QETMRDYK--EQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK 129 E M ++F A F QL + D+ VD V DLG+SS+QID DRGFS+ Sbjct: 68 TERMEREGLADRFIPVHAAFDQLDQVLADQDIERVDAVFMDLGLSSLQIDETDRGFSYSH 127 Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM S ++A ++ + +L RI GEE+ + +IA AIV RR PF TT Sbjct: 128 DAPLDMRMDVSQPLTAERILATYDAAELVRIFKEYGEERFSRQIARAIVARRDKEPFTTT 187 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ L+ + V + +PA R FQALRI VN E+++LA L A L GG L+V Sbjct: 188 AQLNRLVDEVVPQAHRPAGNPAKRVFQALRIEVNGELDKLASTLPQAANRLHVGGRLVVE 247 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 S+HSLED+ VK F A + + F +T+ + + ++A N RS S Sbjct: 248 SYHSLEDKTVKSFMAQGLRVDVPAGLPVIPPDAQPFFTDLTRGAIKADEHEIAANPRSAS 307 Query: 309 AKLRAGM 315 +LRA Sbjct: 308 VRLRAVE 314 >gi|57236996|ref|YP_178797.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni RM1221] gi|68565428|sp|Q5HV88|RSMH_CAMJR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|57165800|gb|AAW34579.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni RM1221] gi|315058156|gb|ADT72485.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp. jejuni S3] Length = 310 Score = 320 bits (821), Expect = 2e-85, Method: Composition-based stats. Identities = 101/302 (33%), Positives = 160/302 (52%), Gaps = 9/302 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76 H+PVLL +V + LD T G GG+S + K ++ IA D+D A+ ++ Sbjct: 4 PHIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKNHPDLKFIACDQDQQALEFSKK 63 Query: 77 TMRDYKEQFSLFQATFSQ-LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 ++D++ + + Q+ FS+ L+ + + G++ D+GVSS Q+D +RGFS LDM Sbjct: 64 RLKDFRNRITFMQSNFSEVLEKISHKEELRGILADIGVSSFQLDNNERGFSVNSD-FLDM 122 Query: 136 RMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM+ S ISA +++N + LT I GE A IA I R P ++ ++L + Sbjct: 123 RMNQNSKISAYEIINTYTKEQLTSIFKDYGELHDAHFIAEKICLERSKNPIKSAKELYQI 182 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 I K + +I AT +FQA+RI VN E++ L L E +L ++SFHSLE Sbjct: 183 IGK--GKQNHRKISKATLAFQAIRIEVNQELKVLKDFLGHLENLKPKNCILAIISFHSLE 240 Query: 255 DRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 DR+VK+FF S + + + ++ Q ITKK + ++E++ N RS AK+R Sbjct: 241 DRIVKQFFKKWSKNCICNEKIMRCECGNNHSLGQIITKKAISASKEELLKNSRSSCAKMR 300 Query: 313 AG 314 A Sbjct: 301 AF 302 >gi|148651949|ref|YP_001279042.1| S-adenosyl-methyltransferase MraW [Psychrobacter sp. PRwf-1] gi|262825202|sp|A5WBQ1|RSMH_PSYWF RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|148571033|gb|ABQ93092.1| S-adenosyl-methyltransferase MraW [Psychrobacter sp. PRwf-1] Length = 339 Score = 320 bits (821), Expect = 2e-85, Method: Composition-based stats. Identities = 108/334 (32%), Positives = 168/334 (50%), Gaps = 22/334 (6%) Query: 12 AIHHTIGDHVPVLLEKVIAL------LN---PAPGKVILDATFGAGGYSRSFCKMGSN-- 60 + + H VLL + +A LN P + +DATFG GG+S+ S+ Sbjct: 11 STSKSEFSHETVLLFETVAAVLGEKSLNDNTPKHDGIYVDATFGRGGHSKLLLNYLSDDA 70 Query: 61 -VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSM 116 + D+DP A+ + + ++ + +F+ + + +GV DG++ DLGVSS Sbjct: 71 KLFVFDKDPEAIDVAND-LAAEDKRVIVVHDSFADMTQCLNSRGVSQVDGIMADLGVSSP 129 Query: 117 QIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175 Q+D G RGFSF + G +DMRM S G + + + + L +L GEE+ + RIA A Sbjct: 130 QLDDGSRGFSFMRDGAIDMRMDTSRGQPVGEWLQTVDEETLADVLYDFGEERHSRRIARA 189 Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 I + + +T +L+ +I++ + HPAT+SFQA+RIF+NNE+ ++ L + Sbjct: 190 I---KGMTQYTSTLELAEVIKQA-HPKWQKGKHPATQSFQAMRIFINNELGDIDSFLAQS 245 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295 L G L V+SFHSLEDR +K+F S +P + S K+ + P Sbjct: 246 LTLLAPQGQLAVISFHSLEDRRIKQFLQRHSRGQYPEDENLPMPPQRPRYFSKPKR-IAP 304 Query: 296 TQEDVAFNRRSRSAKLRAGMRTVERSIEDDSFVH 329 ++ +V N RSRSA LR RT D S H Sbjct: 305 SKAEVTVNNRSRSAWLRVATRTDTPYNTDPSPQH 338 >gi|295394731|ref|ZP_06804946.1| S-adenosyl-methyltransferase MraW [Brevibacterium mcbrellneri ATCC 49030] gi|294972327|gb|EFG48187.1| S-adenosyl-methyltransferase MraW [Brevibacterium mcbrellneri ATCC 49030] Length = 362 Score = 320 bits (820), Expect = 2e-85, Method: Composition-based stats. Identities = 116/317 (36%), Positives = 173/317 (54%), Gaps = 20/317 (6%) Query: 19 DHVPVLLEKVIALLN----------PAPGKVILDATFGAGGYSRSFCKMGS--NVIALDR 66 HVPVLL+ + LL AP V++D T G GG+S ++ +VI +DR Sbjct: 43 PHVPVLLDMCVELLGHGIEEARARGIAP--VVIDFTLGMGGHSEGILRVFDDVHVIGIDR 100 Query: 67 DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDR 123 DP A+ + + +F + + + + +G + GV+FDLGVSS+Q+D R Sbjct: 101 DPAAIEIATSRLAPFGSRFEAVCTSDDNISEVLEQRGNPPISGVLFDLGVSSLQLDDDAR 160 Query: 124 GFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GFS+ + PLDMRM+ + GISA+DV+ + DLTRI+ GEE+ A RIA AIV R+ Sbjct: 161 GFSYSRDTPLDMRMNPTEGISAADVLATYSENDLTRIISTYGEERYARRIARAIVADREH 220 Query: 183 APFQTTQDLSSLIQKTVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 P+ +TQ L+ LI + V KN R HPA R+FQALRI VN+E+ + + L +A AL Sbjct: 221 TPWTSTQQLADLIGRIVPDPKNQRKRSHPAKRTFQALRIEVNDELGNITRSLPAALSALH 280 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300 GG+ +V S+ S ED +VK+ F + + + + I + QE++ Sbjct: 281 LGGVAVVESYQSGEDIIVKRIFRQGTTVQAPPDLPVVPDHLKPWLEEIVRGAYKAPQEEI 340 Query: 301 AFNRRSRSAKLRAGMRT 317 N R+ S +LRA +T Sbjct: 341 DHNPRAASVRLRAVRKT 357 >gi|206896128|ref|YP_002247018.1| S-adenosyl-methyltransferase MraW [Coprothermobacter proteolyticus DSM 5265] gi|263446122|sp|B5Y8C1|RSMH_COPPD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|206738745|gb|ACI17823.1| S-adenosyl-methyltransferase MraW [Coprothermobacter proteolyticus DSM 5265] Length = 299 Score = 320 bits (820), Expect = 2e-85, Method: Composition-based stats. Identities = 111/304 (36%), Positives = 163/304 (53%), Gaps = 23/304 (7%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76 +H PV+ ++V LL + +DAT G+GG+ I +D DP AV E Sbjct: 6 EHKPVMAKQVAELLVSNEEGIYVDATAGSGGHLGLLANTYPEASFIGIDIDPEAVKFLTE 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + ++ L D + VDG++ DLG+S Q RGFS + GPL Sbjct: 66 KFAGV-SNVRIIRGNYADLPDILHSMEIGQVDGILLDLGISMHQALSAQRGFSIKNPGPL 124 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMR S ++A ++VN + + L I+ GEE++A +IA A+V+ R+ P +TT +L+ Sbjct: 125 DMRFSIDQKVTAYELVNSLSEEQLADIIYRYGEERRARKIAKAVVEARKVKPLETTDELA 184 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 L+ +TV + RIHPATR FQALRI N E++ L L + LK GG L V+S+HS Sbjct: 185 DLVARTVGY--RGRIHPATRVFQALRIATNRELDNLQVALPRIFQVLKEGGRLAVISYHS 242 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK+FF + + +R +TKKVV P+ E++ N SRSAKLR Sbjct: 243 LEDRIVKQFFKTWEEEGKGLR--------------LTKKVVKPSLEEINENPSSRSAKLR 288 Query: 313 AGMR 316 + Sbjct: 289 VFKK 292 >gi|318057546|ref|ZP_07976269.1| 16S rRNA m(4)C1402 methyltranserfase [Streptomyces sp. SA3_actG] gi|318081147|ref|ZP_07988479.1| 16S rRNA m(4)C1402 methyltranserfase [Streptomyces sp. SA3_actF] Length = 343 Score = 320 bits (820), Expect = 2e-85, Method: Composition-based stats. Identities = 112/309 (36%), Positives = 173/309 (55%), Gaps = 10/309 (3%) Query: 2 ESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMG 58 + + + A G HVPV+L + + LL PA PG V++D T G GG+S + Sbjct: 13 DGTAQDPPAPAAGTAEGRHVPVMLRRCLDLLGPALAEPGAVVVDCTLGLGGHSEALLSTF 72 Query: 59 S--NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGV 113 ++ALDRD A+ E + + E+ L A + +L D + G V G++FDLGV Sbjct: 73 PAARLVALDRDKEALRLAGERLAPFGERAMLAHAVYDELPDVLDRLGIPRVQGILFDLGV 132 Query: 114 SSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRI 172 SSMQ+D DRGF++ + PLDMRM + G+SA++V+N +L RIL GEEKQA RI Sbjct: 133 SSMQLDEADRGFAYAQDAPLDMRMDQTAGLSAAEVLNTYPPGELVRILRTYGEEKQARRI 192 Query: 173 AHAIVKRRQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQG 231 A+V+ R+ PF + L LI++ + +K +PA R+FQALRI VN E+ L + Sbjct: 193 VSAVVREREKEPFARSARLVELIREALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERA 252 Query: 232 LRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKK 291 + +A L GG + V+++HSLEDRLVK+ ++ + + + + +T+ Sbjct: 253 IPAAVNTLAVGGRIAVLAYHSLEDRLVKQVLSTGATSTAPPGLPVVPERYQPRLKLLTRG 312 Query: 292 VVVPTQEDV 300 +P +E+V Sbjct: 313 AELPAEEEV 321 >gi|308062033|gb|ADO03921.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori Cuz20] Length = 310 Score = 320 bits (820), Expect = 2e-85, Method: Composition-based stats. Identities = 112/304 (36%), Positives = 173/304 (56%), Gaps = 14/304 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 H VLL++V+ P V++D T G GG+S++ ++ I +D+D FA +E Sbjct: 8 HQSVLLQEVLQAFTPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFAQEIAKER 67 Query: 78 MRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++ ++ +++L F++ ++ + + GV+ DLGVSS+Q+D +RGF+F S LD Sbjct: 68 LKAFEGRYNLLSGGFAKRFKEALETHNKEIKGVLVDLGVSSLQLDDDNRGFNF-HSHALD 126 Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM G ++A V+N V L +I GE K+ +IAH I +RR PF+ +DLS Sbjct: 127 MRMDLEGDLNAQKVINSYPVVALEKIFKDYGEIKEYKKIAHKIAERRAKKPFKDAKDLSD 186 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 + SKN +IHPAT FQA+RI VN+E+EEL + L+ A G +L V+SFHSL Sbjct: 187 FLSS---LSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCARNL--KGAILCVISFHSL 241 Query: 254 EDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 ED LVK F + + + + A+ + +TKK + P+ E++ NRRSRSAK+ Sbjct: 242 EDALVKNAFKDYAKNCICDPSSFKCACSNNHALGEILTKKPITPSPEEIKNNRRSRSAKM 301 Query: 312 RAGM 315 R Sbjct: 302 RVFQ 305 >gi|308374510|ref|ZP_07667801.1| hypothetical protein TMFG_01127 [Mycobacterium tuberculosis SUMu006] gi|308341663|gb|EFP30514.1| hypothetical protein TMFG_01127 [Mycobacterium tuberculosis SUMu006] gi|323719262|gb|EGB28406.1| hypothetical protein TMMG_01445 [Mycobacterium tuberculosis CDC1551A] Length = 328 Score = 320 bits (820), Expect = 2e-85, Method: Composition-based stats. Identities = 112/316 (35%), Positives = 171/316 (54%), Gaps = 18/316 (5%) Query: 24 LLEKVIALLNPA-----PGK---VILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSC 73 + ++ LL PA P V+LDAT GAGG++ F + +I LDRDP A+ Sbjct: 1 MAQRCFELLTPALTRYYPDGSQAVLLDATIGAGGHAERFLEGLPGLRLIGLDRDPTALDV 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSSMQIDCGDRGFSF 127 + + + ++ +L + L + + G VDG++FDLGVSSMQ+D +RGF++ Sbjct: 61 ARSRLVRFADRLTLVHTRYDCLGAALAESGYAAVGSVDGILFDLGVSSMQLDRAERGFAY 120 Query: 128 QKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 PLDMRM + ++A+D+VN + L IL GEE+ A RIA IV+RR PF Sbjct: 121 ATDAPLDMRMDPTTPLTAADIVNTYDEAALADILRRYGEERFARRIAAGIVRRRAKTPFT 180 Query: 187 TTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 +T +L +L+ + + ++ HPA R+FQALRI VN+E+E L + +A AL GG + Sbjct: 181 STAELVALLYQAIPAPARRVGGHPAKRTFQALRIAVNDELESLRTAVPAALDALAIGGRI 240 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V+++ SLEDR+VK+ FA + H F+S+T + ++ N R Sbjct: 241 AVLAYQSLEDRIVKRVFAEAVASATPAGLPVELPGHEPRFRSLTHGAERASVAEIERNPR 300 Query: 306 SRSAKLRAGMRTVERS 321 S +LRA R R+ Sbjct: 301 STPVRLRALQRVEHRA 316 >gi|92114320|ref|YP_574248.1| methyltransferase [Chromohalobacter salexigens DSM 3043] gi|123265653|sp|Q1QVF9|RSMH_CHRSD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|91797410|gb|ABE59549.1| methyltransferase [Chromohalobacter salexigens DSM 3043] Length = 331 Score = 320 bits (820), Expect = 3e-85, Method: Composition-based stats. Identities = 114/306 (37%), Positives = 170/306 (55%), Gaps = 13/306 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H VLL+ + L P LD TFG GG+SR+ + ++A+DRDP A++ G Sbjct: 28 HASVLLDGAVEALMTDPDGCYLDGTFGRGGHSRAILQRLSPQGRLLAIDRDPAALAEGAT 87 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 +F+L F++L D D + GV+ D+GVSS Q+D RGFSF + GP Sbjct: 88 W---DDPRFTLRHGRFAELDDIARDAALHRRLSGVLLDVGVSSPQLDDASRGFSFLRDGP 144 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G SA+D + + + +D++ + GEE+ A RIA AIV RR P T DL Sbjct: 145 LDMRMDPTQGESAADWLARVSERDMSDVFKRYGEERFARRIAKAIVARRGERPITHTADL 204 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + L++ + + HPATR FQA+RI VN E+++L L +A ++L GG L+V+SFH Sbjct: 205 AELVKAAHPAWEKGK-HPATRVFQAIRIHVNGELDQLEAALAAALESLAPGGRLVVISFH 263 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFNRRSRSAK 310 SLEDRLVK+F + + +P + + K P ++++A N R+RSA Sbjct: 264 SLEDRLVKRFIRDKVRGDTHLPRDLPIRDTQLNRRLAMVGKARRPDEDEIALNPRARSAV 323 Query: 311 LRAGMR 316 +R + Sbjct: 324 MRVAQK 329 >gi|255322622|ref|ZP_05363766.1| S-adenosyl-methyltransferase MraW [Campylobacter showae RM3277] gi|255300183|gb|EET79456.1| S-adenosyl-methyltransferase MraW [Campylobacter showae RM3277] Length = 310 Score = 320 bits (820), Expect = 3e-85, Method: Composition-based stats. Identities = 97/301 (32%), Positives = 160/301 (53%), Gaps = 8/301 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76 HVPVLL +V+ VI+D T G GG+S + + N +IA D+D A+ E Sbjct: 4 PHVPVLLNEVLQAFEDIKSGVIVDCTLGYGGHSSAILEQNQNVNLIACDQDEEAIKFSSE 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 ++ + ++ +F++ FS++ V + G++ D+GVSS+Q+D +RGF + LDMR Sbjct: 64 RLKKFGQRAQIFKSKFSEILGKVEQSQIRGILADIGVSSLQLDKNERGFGLKSEN-LDMR 122 Query: 137 MS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M + SA D+VN + K+L RI GE ++ A I++ RQS ++ + L+ +I Sbjct: 123 MDAQAKFSAYDIVNFYSAKELERIFADYGELPSPAKFAAKIIEARQSGEIKSAERLAQII 182 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + + AT +FQA+RI VNNE+ EL L+S E + ++ ++SFHSLED Sbjct: 183 --GLKGVNGRSVSAATLAFQAIRIEVNNELGELQNLLQSIEDSQIDECIVAIISFHSLED 240 Query: 256 RLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 R+VK F + + A+ + ++KK + P+ ++ N RS AK+R Sbjct: 241 RIVKNKFRQWAQSCICPPQALRCTCGGDNALGKIVSKKAITPSAAEIKANPRSSCAKMRI 300 Query: 314 G 314 Sbjct: 301 F 301 >gi|88856505|ref|ZP_01131162.1| S-adenosyl-methyltransferase [marine actinobacterium PHSC20C1] gi|88814159|gb|EAR24024.1| S-adenosyl-methyltransferase [marine actinobacterium PHSC20C1] Length = 329 Score = 320 bits (820), Expect = 3e-85, Method: Composition-based stats. Identities = 101/306 (33%), Positives = 158/306 (51%), Gaps = 9/306 (2%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCG 74 H PVLLE+ I LL PA PG V++D T G G++ +F + + + +DRD A++ Sbjct: 19 HTPVLLERSIELLAPALEAPGAVLVDGTLGMAGHAEAFLQRFPELTLVGIDRDEDALAIA 78 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + + + A + ++ + G V G+ FDLGVSS+Q+D +RGFS+ + Sbjct: 79 RRRLEPFASRTHFVHAVYEEIPTALASLGFPNVQGIFFDLGVSSLQLDRVERGFSYSQDA 138 Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S +A ++ + +L RI G+EK A R A IV+ R+ P T+ Sbjct: 139 PLDMRMDASTPVTAEHILATYSELELRRIFYSYGDEKLAPRFASRIVQFREQQPLTTSAQ 198 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L LI + HPA R FQALRI VN E+ L + + +A +L GG ++V+++ Sbjct: 199 LVELIIAATPAAAQRAGHPAKRVFQALRIEVNQELSVLERAIPAAINSLALGGRMVVLAY 258 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK+ RS + H A + + + + + N R++ + Sbjct: 259 QSLEDRIVKRELQRRSRSTAPAGLPVELPEHKAELKLLVRGSEQASDAEQQTNPRAKPVR 318 Query: 311 LRAGMR 316 LRA R Sbjct: 319 LRAIER 324 >gi|317402444|gb|EFV83013.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Achromobacter xylosoxidans C54] Length = 365 Score = 319 bits (819), Expect = 3e-85, Method: Composition-based stats. Identities = 125/350 (35%), Positives = 183/350 (52%), Gaps = 37/350 (10%) Query: 19 DHVPVLLEKVIALL-----------NPAPG-----------KVILDATFGAGGYSRSFCK 56 +H PVLLE + L PG V +D TFG GG+SR Sbjct: 4 EHRPVLLEPTVDALLLADFGGKGAARSQPGDEPAAATRAERGVFVDGTFGRGGHSRELLG 63 Query: 57 MGS---NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFD 110 ++ D+DP A++ + ++ F+ + + + G VDGV+ D Sbjct: 64 RLGPTARLVVFDKDPEAIAVANAL-AAADSRVTVVHGGFATMAEELRQLGIDKVDGVMLD 122 Query: 111 LGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQA 169 LGVSS QID +RGFSF + GPLDMRM + G + +D + QA+V ++ ++ GEE+ A Sbjct: 123 LGVSSPQIDDAERGFSFMRDGPLDMRMDTTRGPTVADWLAQASVDEMREVIADYGEERFA 182 Query: 170 SRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELA 229 ++A AI RR + P +TT +L+ + V ++ HPATR+FQALRI++N E+EELA Sbjct: 183 FQVAKAIAARRATRPLRTTLELAECVASAV-RTREKGQHPATRTFQALRIYINRELEELA 241 Query: 230 QGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQS 287 + L SA L GG L V+SFHSLEDR+VK+ A+ + A + S V +S Sbjct: 242 RTLASALDLLAPGGRLAVISFHSLEDRMVKQCIAAAARPAAAHARLPLRESEMPQPVLRS 301 Query: 288 ITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVER--SIEDDSFVHLPRLPT 335 + + V+ E+VA N R+RSA LR RT + +FV + LP Sbjct: 302 LGR--VLAEDEEVAANARARSAVLRVAERTATPLSAEGGMAFVKIGSLPG 349 >gi|15618336|ref|NP_224621.1| S-adenosyl-methyltransferase MraW [Chlamydophila pneumoniae CWL029] gi|15835954|ref|NP_300478.1| S-adenosyl-methyltransferase MraW [Chlamydophila pneumoniae J138] gi|16752618|ref|NP_444882.1| S-adenosyl-methyltransferase MraW [Chlamydophila pneumoniae AR39] gi|33241770|ref|NP_876711.1| S-adenosyl-methyltransferase MraW [Chlamydophila pneumoniae TW-183] gi|20139310|sp|Q9Z8C2|RSMH_CHLPN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|4376702|gb|AAD18565.1| SAM-Dependent Methytransferase [Chlamydophila pneumoniae CWL029] gi|7189261|gb|AAF38187.1| conserved hypothetical protein [Chlamydophila pneumoniae AR39] gi|8978793|dbj|BAA98629.1| SAM-dependent methytransferase [Chlamydophila pneumoniae J138] gi|33236279|gb|AAP98368.1| predicted S-adenosylmethionine-dependent methyltransferase [Chlamydophila pneumoniae TW-183] gi|269303297|gb|ACZ33397.1| S-adenosyl-methyltransferase MraW [Chlamydophila pneumoniae LPCoLN] Length = 297 Score = 319 bits (819), Expect = 3e-85, Method: Composition-based stats. Identities = 111/303 (36%), Positives = 161/303 (53%), Gaps = 20/303 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI---ALDRDPFAVSCGQE 76 H+PVL+E+ +AL P + D T GAGG++ +F + ++ DRD A++ ++ Sbjct: 6 HIPVLVEECLALFAQRPPQTFRDVTLGAGGHAYAFLEAYPSLTCYDGSDRDLQALAIAEK 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS-GPLDM 135 + ++++ S A+F L + + DGV+ DLGVSSMQ+D RGFSFQ LDM Sbjct: 66 RLETFQDRVSFSHASFEDLANQPTPRLYDGVLADLGVSSMQLDTLSRGFSFQGEKEELDM 125 Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM + +SASDV+N ++L RI GEE Q A A+V R+ + QD+ Sbjct: 126 RMDQTQELSASDVLNSLKEEELGRIFREYGEEPQWKSAAKAVVHFRKHKKILSIQDVKEA 185 Query: 195 IQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 + + + +IHP T FQALR++VN E +L L SA L G L+++SF S Sbjct: 186 LLGVFPHYRFHRKIHPLTLIFQALRVYVNGEDRQLKSLLTSAISWLAPQGRLVIISFCSS 245 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 EDR VK FF + + ITKKV+ PT ++V N RSRSAKLR Sbjct: 246 EDRPVKWFFKEAEASGLG--------------KVITKKVIQPTYQEVRRNPRSRSAKLRC 291 Query: 314 GMR 316 + Sbjct: 292 FEK 294 >gi|317182020|dbj|BAJ59804.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori F57] Length = 308 Score = 319 bits (819), Expect = 3e-85, Method: Composition-based stats. Identities = 111/311 (35%), Positives = 173/311 (55%), Gaps = 14/311 (4%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70 + H VLL++V+ P V++D T G GG+S++ + +I +D+D FA Sbjct: 1 MQEIENLHQSVLLQEVLQAFVPLEEGVLIDCTLGLGGHSKAILSQKPHLKLIGIDKDKFA 60 Query: 71 VSCGQETMRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSF 127 +E ++ ++ +++L F++ ++ + + GV+ DLGVSS+Q+D +RGF+F Sbjct: 61 QEIAKERLKAFEGRYNLLSGGFAKRFKEALETHDKEIKGVLVDLGVSSLQLDDDNRGFNF 120 Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 S LDMRM S ++A V+N + L +I GE K+ +IAH I +RR PF+ Sbjct: 121 -HSHALDMRMDLESDLNAQKVINYYPIVALEKIFRDYGEIKEYKKIAHKIAERRAKKPFK 179 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 +DLS + SKN +IHPAT FQA+RI VN E+EEL + L+ A G +L Sbjct: 180 DAKDLSDFLSS---LSKNKKIHPATLVFQAVRIEVNRELEELKEFLQCARNL--KGAILC 234 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 V+SFHSLED LVK F + + + + A+ + +TKK + P+ E++ NR Sbjct: 235 VISFHSLEDALVKNAFKDYAKNCICDPLSFKCTCSNNYALGEILTKKPITPSPEEIKNNR 294 Query: 305 RSRSAKLRAGM 315 RSRSAK+R Sbjct: 295 RSRSAKMRVFQ 305 >gi|261414983|ref|YP_003248666.1| S-adenosyl-methyltransferase MraW [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371439|gb|ACX74184.1| S-adenosyl-methyltransferase MraW [Fibrobacter succinogenes subsp. succinogenes S85] gi|302325451|gb|ADL24652.1| S-adenosyl-methyltransferase MraW [Fibrobacter succinogenes subsp. succinogenes S85] Length = 337 Score = 319 bits (819), Expect = 3e-85, Method: Composition-based stats. Identities = 88/310 (28%), Positives = 150/310 (48%), Gaps = 14/310 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQE 76 H PV+L++ + LN P D T G GG+S + + A DRD AV + Sbjct: 30 HDPVMLKECLEGLNIKPNGTYSDCTLGGGGHSYAIAQELNSEGTLHAFDRDDEAVQFATK 89 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + +F + FS+L + + +DGV++DLG+SS Q+D RGF+F PLD+R Sbjct: 90 RLAGVAPKFIVHPVPFSELGNEIEPNSLDGVLYDLGISSHQVDDSSRGFTFVGDNPLDLR 149 Query: 137 MS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ------ 189 M +SA + + + D L + +A ++A I + + T Sbjct: 150 MDRRENVSAQEWLRSVSEDDFAAALRKNADMDRAFKLATRIKE--KVGEITTEGRDVLPS 207 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 D+ ++++ + R FQA+R+ VN E++++ LR+A LK GG L+V+S Sbjct: 208 DIKAVVEAVFPDKRREANSLLARVFQAIRMEVNGELKQIEDSLRAAVDCLKVGGRLVVMS 267 Query: 250 FHSLEDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +HS+EDR VK+ A + + + + + +K ++P+ +++ N R+R Sbjct: 268 YHSVEDRCVKETAAEFEKACICPENLPVCMCGGNHQRLKKVNRKPILPSADEINRNSRAR 327 Query: 308 SAKLRAGMRT 317 SAKLR R Sbjct: 328 SAKLRIYERV 337 >gi|306818510|ref|ZP_07452233.1| S-adenosyl-methyltransferase MraW [Mobiluncus mulieris ATCC 35239] gi|304648683|gb|EFM45985.1| S-adenosyl-methyltransferase MraW [Mobiluncus mulieris ATCC 35239] Length = 340 Score = 319 bits (819), Expect = 3e-85, Method: Composition-based stats. Identities = 114/337 (33%), Positives = 183/337 (54%), Gaps = 12/337 (3%) Query: 11 SAIHHTIGDHVPVLLEKVIALLNPA----PGKVILDATFGAGGYSRSFCKMGSNV--IAL 64 S I T H PVL+++ + LL PA V++DAT G GG+S + + ++ I + Sbjct: 2 STITPTAAIHQPVLVQRCVELLAPALIPVERPVLVDATVGLGGHSEALLQRFPHLQIIGI 61 Query: 65 DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCG 121 DRD A + + + + + + AT+ QL + + ++G VDG++ DLGVSS+Q+D Sbjct: 62 DRDGEARALAGKRLSVFGSRIEIVAATYGQLAEILAERGLETVDGILADLGVSSLQLDET 121 Query: 122 DRGFSFQ-KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 RGF++ PLDMRM S GI+A+ + + ++ R+L GEEK A +IA IVK Sbjct: 122 ARGFAYAIPEAPLDMRMDQSRGITAAQFIATTSETEIARVLRTYGEEKFARQIARNIVKT 181 Query: 180 RQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R+ P +TT +L LI+ T+ ++ + +PA R+FQALR+ VN+E+ +L L +A A Sbjct: 182 REVTPLRTTGELVDLIRATIPAPARRHGGNPAKRTFQALRVAVNDELRDLEVFLTAALDA 241 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L+ GG L+V S+ SLEDRLVK+ F + + + Q +T+ Sbjct: 242 LRVGGRLVVESYQSLEDRLVKQAFTPGIHPEVPRGLPVIPTGYEPWLQDLTRGAEKADAL 301 Query: 299 DVAFNRRSRSAKLRAGMRTVERSIEDDSFVHLPRLPT 335 ++ N RS+S +LRA + E + + + P Sbjct: 302 ELQRNSRSQSVRLRAVAKLREMAPHEPKRTNPNPAPR 338 >gi|269792475|ref|YP_003317379.1| S-adenosyl-methyltransferase MraW [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100110|gb|ACZ19097.1| S-adenosyl-methyltransferase MraW [Thermanaerovibrio acidaminovorans DSM 6589] Length = 313 Score = 319 bits (819), Expect = 4e-85, Method: Composition-based stats. Identities = 106/308 (34%), Positives = 171/308 (55%), Gaps = 26/308 (8%) Query: 20 HVPVLLEKVIALLNPAPG-KVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76 H+PV+L+K++ LL P +++D T GAGG+SR+ + G+++I +D+D + +E Sbjct: 4 HIPVMLDKILELLRPWEEVGLVVDGTLGAGGHSRAILERCQGASLIGIDQDQSILDIARE 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + ++ F + + D G V VFDLG+SS Q+D +RGFSF GPL Sbjct: 64 VLSPFGDRVRTVLGNFRDVGRILADLGSPRVSAFVFDLGISSWQVDTPERGFSFNYKGPL 123 Query: 134 DMRMSCSGI---SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ-SAPFQTTQ 189 DMRM + +A+D+VN ++ +L + GE+ A ++A AI + R+ P +T + Sbjct: 124 DMRMDMGRLGSRTAADIVNGWSMAELAALFRRYGEDPFAYQVARAICRHREKEGPIETCE 183 Query: 190 DLSSLIQKTVYFS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 L S+I+ + + R HPA R FQALRI VN+E+ L + L G +I Sbjct: 184 ALVSVIRSAIPAPAQRKMRGHPARRIFQALRIEVNDELGALEELLDQLPSMGSEGCKVIF 243 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +++HSLEDRLVK +G+ + V +T+K +VP++E+V NRR+R Sbjct: 244 ITYHSLEDRLVKGRMREWAGQDLGVP--------------LTRKPLVPSEEEVELNRRAR 289 Query: 308 SAKLRAGM 315 SAK+R + Sbjct: 290 SAKVRCFV 297 >gi|237747024|ref|ZP_04577504.1| S-adenosyl-methyltransferase MraW [Oxalobacter formigenes HOxBLS] gi|229378375|gb|EEO28466.1| S-adenosyl-methyltransferase MraW [Oxalobacter formigenes HOxBLS] Length = 321 Score = 319 bits (819), Expect = 4e-85, Method: Composition-based stats. Identities = 112/311 (36%), Positives = 171/311 (54%), Gaps = 18/311 (5%) Query: 20 HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSC 73 H VLL + + L+ V LD TFG GG+SR + ++A D+DP AV Sbjct: 8 HDSVLLNEAVDALDISGKRADGVYLDGTFGRGGHSRLILERLGEKGRLVAFDKDPEAVRV 67 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130 +E +F + TF+ L++ + ++ + DG++ DLGVSS Q++ RGFSF+ Sbjct: 68 AKEI---GDPRFEIVHGTFAALEEVLEERKIKAIDGILLDLGVSSPQVEDAKRGFSFRLD 124 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 GPLDMRM + G+SA + + K + ++ GEE+ A +IA IV R P +T+ Sbjct: 125 GPLDMRMDSTRGMSAREWLAVETEKKIAEVIYQYGEERFAFQIAKEIVAGRAIQPIDSTK 184 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ ++ + V + + +PATR+FQA+RI+VN E+EEL GL A + L G + V+S Sbjct: 185 QLAQIVARAVKTFEKGK-NPATRTFQAIRIYVNRELEELEIGLEKAWQRLGLEGRMSVIS 243 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 FHSLEDR+VK+FFA ++ M R + S + + K + P+ +V N R+R Sbjct: 244 FHSLEDRIVKRFFAGKATVKMPDRRLPIRASELPRPEMKLLGK--IKPSAAEVKRNVRAR 301 Query: 308 SAKLRAGMRTV 318 SA LR R Sbjct: 302 SAILRVATRVA 312 >gi|108563117|ref|YP_627433.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori HPAG1] gi|122980507|sp|Q1CTG3|RSMH_HELPH RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|107836890|gb|ABF84759.1| hypothetical protein HPAG1_0692 [Helicobacter pylori HPAG1] Length = 308 Score = 319 bits (818), Expect = 4e-85, Method: Composition-based stats. Identities = 112/304 (36%), Positives = 172/304 (56%), Gaps = 14/304 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 H VLL++V+ P V++D T G GG+S++ ++ I +D+D FA +E Sbjct: 8 HQSVLLQEVLQAFTPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFAQEIAKER 67 Query: 78 MRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++ ++ +++L F++ ++ + + GV+ DLGVSS+Q+D +RGF+F S LD Sbjct: 68 LKAFEGRYNLLSGGFAKRFKEALETHNKEIKGVLVDLGVSSLQLDDDNRGFNF-HSHTLD 126 Query: 135 MRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM S ++A V+N V L +I GE K+ +IAH I +RR PF+ +DLS Sbjct: 127 MRMDLKSDLNAQKVINSYPVVALEKIFRDYGEIKEYKKIAHKIAERRAKKPFKDAKDLSD 186 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 + SKN +IHPAT FQA+RI VN+E+EEL + L+ A G +L V+SFHSL Sbjct: 187 FLSS---LSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCARNL--KGAILCVISFHSL 241 Query: 254 EDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 ED LVK F + + + + A+ +TKK + P+ E++ NRRSRSAK+ Sbjct: 242 EDALVKNAFKDYAKNCICDPSSFQCTCSNNHALGAILTKKPITPSPEEIKNNRRSRSAKM 301 Query: 312 RAGM 315 R Sbjct: 302 RVFQ 305 >gi|242018707|ref|XP_002429815.1| S-adenosyl-methyltransferase mraW, putative [Pediculus humanus corporis] gi|212514833|gb|EEB17077.1| S-adenosyl-methyltransferase mraW, putative [Pediculus humanus corporis] Length = 382 Score = 319 bits (818), Expect = 4e-85, Method: Composition-based stats. Identities = 118/330 (35%), Positives = 169/330 (51%), Gaps = 29/330 (8%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76 H PV+L +VI L+ G + LD TFG+GG+S ++ +ALDRDP A Sbjct: 49 PHEPVMLNEVIKNLDLKKGNLFLDMTFGSGGHSLELLNRVPDLKILALDRDPIAYEYALN 108 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + FS L + D + DG++ DLG SSMQ D +RGFS G Sbjct: 109 AKEKHPDNIYPLLGKFSDLPKLLNDNNIKANTIDGILLDLGCSSMQFDTPERGFSINNDG 168 Query: 132 PLDMRMSCS----GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQ 186 PLDMRM C ++A DV+ A +L I GEEK++ +IA AI + R + P + Sbjct: 169 PLDMRMDCDRIKGSLTAGDVIAHATEMELYNIFKKYGEEKRSRKIARAITQMRNTFKPIK 228 Query: 187 TTQDLSSLIQKTV----YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 TT+DL+ LI + Y N + T+ FQALRIFVNNE+ EL + A LK G Sbjct: 229 TTKDLNDLISVVLTDVRYDKLNRKTGTGTKIFQALRIFVNNELNELNYAMTLAHHYLKVG 288 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSG-------------KVMAVRHMIPSNAHPAVFQSIT 289 +V++FHSLED +VK+ F ++ + ++ + + + Sbjct: 289 SRAVVLTFHSLEDVIVKRHFKNQHQLNYVQNLPLNMINSLKTYDECEFNSFNKQYWIPVN 348 Query: 290 KKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319 KKV++P +V N RSRSAKLRA ++T E Sbjct: 349 KKVLIPDSFEVCNNPRSRSAKLRAAIKTQE 378 >gi|254779311|ref|YP_003057416.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori B38] gi|263456117|sp|C7BZ94|RSMH_HELPB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|254001222|emb|CAX29192.1| Putative S-adenosyl-methyltransferase MraW [Helicobacter pylori B38] Length = 308 Score = 319 bits (818), Expect = 4e-85, Method: Composition-based stats. Identities = 114/310 (36%), Positives = 175/310 (56%), Gaps = 14/310 (4%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFA 70 + H VLL++V+ P V++D T G GG+S++ ++ I +D+D FA Sbjct: 1 MQEIENLHQSVLLQEVLQAFTPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFA 60 Query: 71 VSCGQETMRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSF 127 +E ++ ++ +++L F++ ++ + + GV+ DLGVSS+Q+D DRGF+F Sbjct: 61 QEIAKERLKAFEGRYNLLSGGFAKRFKEALETHNKEIKGVLVDLGVSSLQLDDDDRGFNF 120 Query: 128 QKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 S LDMRM S ++A V+N V L +I GE K+ +IAH I +RR PF+ Sbjct: 121 -HSHALDMRMDLKSDLNAQKVINSYPVIALEKIFRDYGEIKEYKKIAHKIAERRTKKPFK 179 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 +DLS + FSKN +IHPAT FQA+RI VN+E+EEL + L+ A G +L Sbjct: 180 DAKDLSEFLSS---FSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCARNL--KGAILC 234 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 V+SFHSLED LVK F + + + + A+ + +TKK + P+ E++ NR Sbjct: 235 VISFHSLEDGLVKNAFKDYAKNCICDPLSFKCACSNNHALGEILTKKPITPSPEEIKNNR 294 Query: 305 RSRSAKLRAG 314 RSRSAK+R Sbjct: 295 RSRSAKMRVF 304 >gi|91200077|emb|CAJ73120.1| similar to S-adenosyl-dependent methyltransferase [Candidatus Kuenenia stuttgartiensis] Length = 299 Score = 319 bits (818), Expect = 4e-85, Method: Composition-based stats. Identities = 114/305 (37%), Positives = 167/305 (54%), Gaps = 22/305 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQE 76 H PV++++V+ L PG +ILD T G GG++ K +I +D+D ++ +E Sbjct: 10 HEPVMVDEVLEYLCLQPGSIILDCTVGGGGHAGKIMDRIKPDGCLIGIDKDFDMLNMTKE 69 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQKSGPL 133 + D F L+ A + + + G+DGV + DLG SS+Q D +RGFSF K GPL Sbjct: 70 CLSDRGCPFKLYHADYVDADEVLRQAGIDGVHGVLLDLGASSLQFDSAERGFSFSKEGPL 129 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + A D++ + + +DL +L GEE+ + RIA I+K R + ++T L+ Sbjct: 130 DMRMDRTASFMAQDLLRKISERDLQALLKKYGEERWSKRIARRIIKERSVSGLKSTTQLA 189 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I++ V + +RIHPATR FQALRI VN E+E L + L ++ G + V+SFHS Sbjct: 190 RIIERAVPSMR-HRIHPATRVFQALRIAVNKELESLEKFLNKIHFSMVKGARIAVISFHS 248 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK F K +F ITKK + P ++ N RSRSAKLR Sbjct: 249 LEDRIVKNSFIEMEDK--------------NIFHIITKKPLRPGASEIERNARSRSAKLR 294 Query: 313 AGMRT 317 R Sbjct: 295 VAERI 299 >gi|187607601|ref|NP_001120214.1| methyltransferase like 15 [Xenopus (Silurana) tropicalis] gi|166796910|gb|AAI59379.1| LOC100145263 protein [Xenopus (Silurana) tropicalis] Length = 375 Score = 319 bits (818), Expect = 4e-85, Method: Composition-based stats. Identities = 138/331 (41%), Positives = 183/331 (55%), Gaps = 35/331 (10%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 HVPV++ +V L P G+ ILD TFGAGG++ S K SN V+ALDRDP A + Q+ Sbjct: 45 HVPVMVNEVTECLAPQEGQTILDLTFGAGGHTTSILKRASNIKVLALDRDPAAFAIAQQL 104 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 FS+ +D + GV DGV+ D G SSMQ D DRGFS + GP Sbjct: 105 AHSCGHNIQPLLGRFSESKDLLTSAGVEPGSIDGVLLDAGCSSMQFDTPDRGFSLSRDGP 164 Query: 133 LDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM +A+DVVN + + L IL GEE+ A +IA AIV+ R P T Sbjct: 165 LDMRMDGDRYPDMPTAADVVNALDQQALASILKTYGEERHAKKIASAIVQARSIYPITRT 224 Query: 189 QDLSSLIQKTVYFSK----NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 Q L+S++ ++ H AT++FQALRIFVNNE+ EL GL +AE L+ GG Sbjct: 225 QQLASIVTGASIQARTDLLQRPAHVATKTFQALRIFVNNELNELHAGLSTAETFLRPGGR 284 Query: 245 LIVVSFHSLEDRLVKKFFA-------------------SRSGKVMAVRHMIPSNAHPAVF 285 L+V+SFHSLEDR+VK+F R+ K M + S+++PA + Sbjct: 285 LVVISFHSLEDRIVKRFLHGIDMADKPNLAARHKIRQGQRNSKEMEDEEFLMSHSNPA-W 343 Query: 286 QSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 I KKV+ P +DV N R RSAKLRA ++ Sbjct: 344 TVIQKKVLTPQYQDVLENPRGRSAKLRAAIK 374 >gi|317483063|ref|ZP_07942064.1| MraW methylase [Bifidobacterium sp. 12_1_47BFAA] gi|291516661|emb|CBK70277.1| S-adenosyl-methyltransferase MraW [Bifidobacterium longum subsp. longum F8] gi|316915469|gb|EFV36890.1| MraW methylase [Bifidobacterium sp. 12_1_47BFAA] Length = 359 Score = 319 bits (818), Expect = 4e-85, Method: Composition-based stats. Identities = 114/307 (37%), Positives = 160/307 (52%), Gaps = 11/307 (3%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 H+PVLL+ + L+ PA + +D T G G+S +F K +I +DRD A+ Sbjct: 8 HLPVLLDDCVNLMAPALEHENAIAVDCTLGLAGHSIAFLKAAPQARLIGIDRDSEALGLA 67 Query: 75 QETMRDYK--EQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK 129 E M ++F A F QL + D+ VD V DLG+SS+QID DRGFS+ Sbjct: 68 TERMEREGLADRFIPVHAAFDQLDQVLADQDIERVDAVFMDLGLSSLQIDETDRGFSYSH 127 Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM S ++A ++ + +L RI GEE+ + +IA AIV RR PF TT Sbjct: 128 DAPLDMRMDVSQPLTAERILATYDAAELVRIFKEYGEERFSRQIARAIVARRDKEPFTTT 187 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ L+ + V + +PA R FQALRI VN E+++LA L A L GG L+V Sbjct: 188 AQLNRLVDEVVPQAHRPAGNPAKRVFQALRIEVNGELDKLASTLPQAANRLHVGGRLVVE 247 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 S+HSLED+ VK F A + + F +T+ V + ++A N RS S Sbjct: 248 SYHSLEDKTVKSFMAQGLRVDVPAGLPVIPPDAQPFFTDLTRGAVKADEHEIAANPRSAS 307 Query: 309 AKLRAGM 315 +LRA Sbjct: 308 VRLRAVE 314 >gi|148259076|ref|YP_001233203.1| S-adenosyl-methyltransferase MraW [Acidiphilium cryptum JF-5] gi|263433381|sp|A5FUK2|RSMH_ACICJ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|146400757|gb|ABQ29284.1| S-adenosyl-methyltransferase MraW [Acidiphilium cryptum JF-5] Length = 313 Score = 319 bits (818), Expect = 4e-85, Method: Composition-based stats. Identities = 139/308 (45%), Positives = 186/308 (60%), Gaps = 9/308 (2%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78 HVPVL E+ +A+L P V LD TFG GGYS S + S V A+DRDP A++ G Sbjct: 7 HVPVLREEAVAMLAPRADGVYLDGTFGGGGYSASMLEAASCTVWAIDRDPAAIARGAALA 66 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 Y ++ L + F L + D+GV DG VFD GVSS Q+D RGFSF+ GPLDM Sbjct: 67 ARYPDRLHLIEGRFGDLLALLRDRGVTALDGAVFDFGVSSYQLDDPSRGFSFRTDGPLDM 126 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RM +G +A+D+VN +L IL GEE+ + RIA AIV+RR + PF+TT DL+++I Sbjct: 127 RMGAAGPTAADIVNGYAEAELADILFHFGEERASRRIAAAIVRRRAAQPFETTADLAAVI 186 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + V + + I PATRSFQALRI VN E+ E+ + L +A L GG L+ VSFHSLED Sbjct: 187 RTVVRPDR-SGIDPATRSFQALRIEVNQELAEIERALEAAASLLAPGGRLVAVSFHSLED 245 Query: 256 RLVKKFFASRSGKVMAVRHMIPSN----AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 R+VK+F + +G V A PS A F+++T+ VV P + + N R+RSA+L Sbjct: 246 RIVKRFMNAATGHVAAPSRHDPSGLARQAAAPRFRALTRGVVTPGEAETVANPRARSARL 305 Query: 312 RAGMRTVE 319 R R Sbjct: 306 RGIERLAA 313 >gi|296129435|ref|YP_003636685.1| S-adenosyl-methyltransferase MraW [Cellulomonas flavigena DSM 20109] gi|296021250|gb|ADG74486.1| S-adenosyl-methyltransferase MraW [Cellulomonas flavigena DSM 20109] Length = 333 Score = 319 bits (818), Expect = 4e-85, Method: Composition-based stats. Identities = 112/318 (35%), Positives = 177/318 (55%), Gaps = 10/318 (3%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGK---VILDATFGAGGYSRSFCKMGSNV--IA 63 M HVPVLLE+ + LL PA V++D T G GG++ + +V + Sbjct: 1 MDEQTADAASRHVPVLLERCVELLAPALAAPGAVLVDCTLGMGGHTEGVLRAIEHVRVVG 60 Query: 64 LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDC 120 +DRDP A++ E + + E+F+ A + ++ D V GV GV+ DLGVSS+Q+D Sbjct: 61 IDRDPQALALASERLAPFGERFTGVHAVYDEIGDVVERLGLPGVQGVLMDLGVSSLQLDE 120 Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGF++ PLDMRM + G +A+DV+N + +D+ R+L + GEE+ A+RIA +V+ Sbjct: 121 AERGFAYAHDAPLDMRMDPTTGPTAADVLNTYDERDIARVLRVYGEERFAARIARGVVRF 180 Query: 180 RQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R+ P T +L +++ V + + HPA R+FQALRI VN E+ L + L +A Sbjct: 181 RERTPLTRTSELVDIVRAGVPAATRRTGGHPAKRTFQALRIEVNGELAALERALPAAIDV 240 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L GG ++V S+ SLEDRLVK+ A+ + + H + +T+ + Sbjct: 241 LAVGGRIVVESYQSLEDRLVKRALAAGATSSAPPDLPVEPVTHAPYLRLLTRGAEEADEA 300 Query: 299 DVAFNRRSRSAKLRAGMR 316 ++A N R++S +LRA R Sbjct: 301 ELARNPRAQSVRLRAAER 318 >gi|134302412|ref|YP_001122382.1| S-adenosyl-methyltransferase MraW [Francisella tularensis subsp. tularensis WY96-3418] gi|263447543|sp|A4IZB0|RSMH_FRATW RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|134050189|gb|ABO47260.1| S-adenosyl-methyltransferase MraW [Francisella tularensis subsp. tularensis WY96-3418] Length = 299 Score = 319 bits (818), Expect = 4e-85, Method: Composition-based stats. Identities = 115/303 (37%), Positives = 177/303 (58%), Gaps = 16/303 (5%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMRDYK 82 +++ I LN P + +DATFG GG+S++ +IA D+D A+S +E + Sbjct: 1 MQESINDLNINPQGIYIDATFGRGGHSKAILNRLTTGRLIAFDKDLDAISYARENFQF-- 58 Query: 83 EQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138 F + A+F+ + DY +DG++ DLGVSS Q+D RGFSF +GPLDMRM Sbjct: 59 SNFEIVHASFASIYDYCLQHSLLGKIDGIIMDLGVSSPQLDNAARGFSFTHNGPLDMRMD 118 Query: 139 CS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTTQDLSSLIQ 196 S GI+AS + + +V DL+ I + GEE+ A +IA I +Q+ +TT +L+ LI+ Sbjct: 119 VSKGITASQALEELSVDDLSYIFKVYGEERFAKKIALRIKDYIQQNGSIRTTLELAELIR 178 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 T+ K + +PATR FQALRI+VNNE+++L L + +K+GG + V+SFHSLEDR Sbjct: 179 ATI--GKKEKKNPATRCFQALRIYVNNELKDLEALLENILAVIKSGGRIAVISFHSLEDR 236 Query: 257 LVKKFFASRSGKVMAVRH---MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 +VK+ F++ + M+P ++ + ITKK ++++ N RSRSA LR Sbjct: 237 IVKQKFSALINPKQELNRITKMLPQDSSQIKLKWITKKS-KANEDELNQNVRSRSAILRV 295 Query: 314 GMR 316 + Sbjct: 296 VEK 298 >gi|289704963|ref|ZP_06501378.1| S-adenosyl-methyltransferase MraW [Micrococcus luteus SK58] gi|289558299|gb|EFD51575.1| S-adenosyl-methyltransferase MraW [Micrococcus luteus SK58] Length = 349 Score = 319 bits (818), Expect = 5e-85, Method: Composition-based stats. Identities = 107/314 (34%), Positives = 172/314 (54%), Gaps = 15/314 (4%) Query: 20 HVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPF 69 H+PV+ ++V+ LL PA V +D T G GG++ + ++ I +DRD Sbjct: 30 HLPVMRDRVVDLLAPAVQAALEAGRTPVAVDGTLGMGGHTEALLTRFPHLRVIGIDRDVH 89 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFS 126 A + E + ++ F T+ ++ + + GV D ++DLGVSS Q+D +RGF+ Sbjct: 90 AQAMAAERLGPLADRLIPFHGTYDRVPEAMAAAGVTKVDAALYDLGVSSYQLDDRERGFA 149 Query: 127 FQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 + PLDMRM + SA+ +V + + ++L RI+ GEE+ A IA AIV+ R AP Sbjct: 150 YSYDAPLDMRMDDTAERSAATLVAELDEQELRRIIRRDGEERFAGPIARAIVRARDEAPI 209 Query: 186 QTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 +TT L +I+ V + HPA R+FQALRI VN E++ L + + AL GG Sbjct: 210 ETTGRLVEVIRSAVPVAAGATGGHPAKRTFQALRIAVNEELDILDAAVPAILDALHVGGR 269 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 L+V+S+HSLEDR+ K+ ++ + + H V + +T+ PT+E+++ NR Sbjct: 270 LVVMSYHSLEDRITKRHLSAWATSTAPPGFPVVLEEHEPVVRVLTRGTEKPTEEEISENR 329 Query: 305 RSRSAKLRAGMRTV 318 R+ SAK+RA + Sbjct: 330 RASSAKVRAVEKIR 343 >gi|213691742|ref|YP_002322328.1| S-adenosyl-methyltransferase MraW [Bifidobacterium longum subsp. infantis ATCC 15697] gi|263445910|sp|B7GQ70|RSMH_BIFLI RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|213523203|gb|ACJ51950.1| S-adenosyl-methyltransferase MraW [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320457836|dbj|BAJ68457.1| S-adenosyl-methyltransferase [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 359 Score = 319 bits (817), Expect = 5e-85, Method: Composition-based stats. Identities = 114/307 (37%), Positives = 160/307 (52%), Gaps = 11/307 (3%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 H+PVLL+ + L+ PA V +D T G G+S +F K +I +DRD A+ Sbjct: 8 HLPVLLDDCVNLMAPALEHENAVAVDCTLGLAGHSIAFLKTAPQARLIGIDRDSEALGLA 67 Query: 75 QETMRDYK--EQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK 129 E M ++F A F QL + D+G VD V DLG+SS+QID DRGFS+ Sbjct: 68 AERMEREGLADRFIPVHAAFDQLDQVLTDRGIERVDAVFMDLGLSSLQIDETDRGFSYSH 127 Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM S ++A ++ + +L RI GEE+ + +IA AIV R PF TT Sbjct: 128 DAPLDMRMDVSQPLTAERILATYDAAELVRIFKEYGEERFSRQIARAIVAHRDKEPFTTT 187 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ L+ + V + +PA R FQALRI VN E+++LA L A L GG L+V Sbjct: 188 AQLNRLVDEVVPQAHRPAGNPAKRVFQALRIEVNGELDKLASTLPQAANRLHVGGRLVVE 247 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 S+HSLED+ VK F A + + F +T+ + + ++A N RS S Sbjct: 248 SYHSLEDKTVKSFMAQGLRVDVPAGLPVIPPDAQPFFTDLTRGAIKADEHEIAANPRSAS 307 Query: 309 AKLRAGM 315 +LRA Sbjct: 308 VRLRAVE 314 >gi|283956102|ref|ZP_06373589.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp. jejuni 1336] gi|283792422|gb|EFC31204.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp. jejuni 1336] Length = 310 Score = 319 bits (817), Expect = 5e-85, Method: Composition-based stats. Identities = 101/302 (33%), Positives = 158/302 (52%), Gaps = 9/302 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76 H+PVLL +V + LD T G GG+S + K ++ IA D+D A+ ++ Sbjct: 4 PHIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKNHPDLKFIACDQDQQALEFSKK 63 Query: 77 TMRDYKEQFSLFQATFSQ-LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 ++D+ + + Q+ FS+ L+ + + G++ D+GVSS Q+D +RGFS LDM Sbjct: 64 RLKDFHNRITFIQSNFSEVLEKISHKEELRGILADIGVSSFQLDNNERGFSVNSD-FLDM 122 Query: 136 RMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM+ S ISA +++N + LT I GE A IA I R P ++ ++L + Sbjct: 123 RMNQNSKISAYEIINTYTKEQLTSIFKDYGELHDAHFIAEKICLERSKNPIKSAKELYQI 182 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 I K + +I AT +FQA+RI VN E++ L L E +L ++SFHSLE Sbjct: 183 IGK--GKQNHRKISKATLAFQAIRIEVNQELKVLKDFLGHLENLKPKNCILTIISFHSLE 240 Query: 255 DRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 DR+VK FF S + + + ++ Q ITKK + ++E++ N RS AK+R Sbjct: 241 DRIVKNFFKKWSKNCICDEKIMRCECGNNHSLGQIITKKAISASKEELLKNSRSSCAKMR 300 Query: 313 AG 314 A Sbjct: 301 AF 302 >gi|325995985|gb|ADZ51390.1| rRNA small subunit methyltransferase H [Helicobacter pylori 2018] gi|325997580|gb|ADZ49788.1| S-adenosyl methyltransferase [Helicobacter pylori 2017] Length = 308 Score = 319 bits (817), Expect = 5e-85, Method: Composition-based stats. Identities = 112/311 (36%), Positives = 175/311 (56%), Gaps = 14/311 (4%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70 + H VLL++V+ P V++D T G GG+S++ + +I +D+D FA Sbjct: 1 MQEIENLHQSVLLQEVLQAFTPLEEGVLIDCTLGLGGHSKAILSQKPHLKLIGIDKDKFA 60 Query: 71 VSCGQETMRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSF 127 +E +++++ +++L F++ ++ + G + GV+ DLGVSS+Q+D +RGF+F Sbjct: 61 QEIAKERLKEFEGRYNLLSGGFAKRFKEALEIHGERIKGVLVDLGVSSLQLDDDNRGFNF 120 Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + LDMRM S ++A V+N V L +I GE K+ +IAH I +RR PF+ Sbjct: 121 RS-HALDMRMDLESELNAQKVINSYPVVALEKIFRDYGEIKEYKKIAHKIAERRAKKPFK 179 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 +DLS + SKN +IHPAT FQA+RI VN+E+EEL + L+ A G +L Sbjct: 180 DAKDLSEFLSS---LSKNKKIHPATLVFQAVRIEVNSELEELKEFLQYARNL--KGAILC 234 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 V+SFHSLED LVK F + + + + A+ +TKK + P+ E++ NR Sbjct: 235 VISFHSLEDGLVKNAFKDYAKNCICDPSSFKCACSNNHALGAILTKKPITPSPEEIKNNR 294 Query: 305 RSRSAKLRAGM 315 RSRSAK+R Sbjct: 295 RSRSAKMRVFQ 305 >gi|307637393|gb|ADN79843.1| rRNA small subunit methyl transferase H [Helicobacter pylori 908] Length = 308 Score = 319 bits (817), Expect = 5e-85, Method: Composition-based stats. Identities = 112/311 (36%), Positives = 173/311 (55%), Gaps = 14/311 (4%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70 + H VLL++V+ P V++D T G GG+S++ + +I +D+D FA Sbjct: 1 MQEIENLHQSVLLQEVLQAFTPLEEGVLIDCTLGLGGHSKAILSQKPHLKLIGIDKDKFA 60 Query: 71 VSCGQETMRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSF 127 +E +++++ +++L F++ ++ + G + GV+ DLGVSS+Q+D +RGF+F Sbjct: 61 QEIAKERLKEFEGRYNLLSGGFAKRFKEALEIHGERIKGVLVDLGVSSLQLDDDNRGFNF 120 Query: 128 QKSGPLDMRMSCSGIS-ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + LDMRM S A V+N V L +I GE K+ +IAH I +RR PF+ Sbjct: 121 RS-HALDMRMDLESESNAQKVINSYPVVALEKIFRDYGEIKEYKKIAHKIAERRAKKPFK 179 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 +DLS + SKN +IHPAT FQA+RI VN+E+EEL + L+ A G +L Sbjct: 180 DAKDLSEFLSS---LSKNKKIHPATLVFQAVRIEVNSELEELKEFLQYARNL--KGAILC 234 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 V+SFHSLED LVK F + + + + A+ +TKK + P+ E++ NR Sbjct: 235 VISFHSLEDGLVKNAFKDYAKNCICDPSSFKCACSNNHALGAILTKKPITPSPEEIKNNR 294 Query: 305 RSRSAKLRAGM 315 RSRSAK+R Sbjct: 295 RSRSAKMRVFQ 305 >gi|189347978|ref|YP_001944507.1| S-adenosyl-methyltransferase MraW [Chlorobium limicola DSM 245] gi|263445795|sp|B3EIL6|RSMH_CHLL2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|189342125|gb|ACD91528.1| S-adenosyl-methyltransferase MraW [Chlorobium limicola DSM 245] Length = 322 Score = 319 bits (817), Expect = 5e-85, Method: Composition-based stats. Identities = 109/318 (34%), Positives = 163/318 (51%), Gaps = 21/318 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--------VIALDRDPFAV 71 H PVL +V+ LL P V +D T G GG+S + + +I +D+D A+ Sbjct: 7 HEPVLAAEVLQLLVRMP-GVYVDGTLGGGGHSLAILEELERKGFLADSFLIGIDQDDHAL 65 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPD--------KGVDGVVFDLGVSSMQIDCGDR 123 E + + ++ + FS + V V G++ DLGVSS QID +R Sbjct: 66 KAASEKLSGFSGSTAIIKGNFSAIAAIVRKISAERHFTDSVAGILLDLGVSSAQIDTPER 125 Query: 124 GFSFQKSGPLDMRMSCSGIS-ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GFS+ +SGPLDMRM S A+D+VN + ++L + GEE ++ IA I+ R+ Sbjct: 126 GFSYMRSGPLDMRMDPEAESSAADLVNTLSERELVTLFFRYGEEPRSRSIARGIIDYREK 185 Query: 183 AP-FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 T++L+ +I + + I +R FQALR+ VN E+E L Q L L A Sbjct: 186 HGSILRTEELAEII-RLREARPDRVIKTLSRVFQALRVEVNRELEVLEQVLADGASLLSA 244 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDV 300 G L V+S+HSLEDR+VK FF ++S R + + A F +T+K V Q+++ Sbjct: 245 QGRLAVISYHSLEDRMVKSFFTAQSSSDWGPRGVGLTEPLKKAEFAVVTRKPVASGQQEL 304 Query: 301 AFNRRSRSAKLRAGMRTV 318 + N RSRSAKLR + Sbjct: 305 SLNPRSRSAKLRVLEKLA 322 >gi|217076157|ref|YP_002333873.1| S-adenosyl-methyltransferase MraW [Thermosipho africanus TCF52B] gi|262825832|sp|B7IEL8|RSMH_THEAB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|217036010|gb|ACJ74532.1| S-adenosyl-methyltransferase MraW [Thermosipho africanus TCF52B] Length = 291 Score = 319 bits (817), Expect = 5e-85, Method: Composition-based stats. Identities = 99/307 (32%), Positives = 160/307 (52%), Gaps = 30/307 (9%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76 H+PV+ ++VI L + +D T G GG++ + + VI LD D ++ ++ Sbjct: 7 KHIPVMPKEVIEHLIWKKDGIYVDCTVGEGGHTLLLASISPDIFVIGLDIDSEVLNIAEK 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + LF++++ L + + V G++ DLG+S+ Q+ RGF+F + PL Sbjct: 67 NLSSF-TNVKLFKSSYVDLPVVLKALNIEKVSGILIDLGISTYQLKAEGRGFTFNRDEPL 125 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ +A DVVN + K+L I+ GEE+ + RIA +IV R P +T +L Sbjct: 126 DMRMNLEQKKTAYDVVNFYSEKELADIIFKYGEERFSRRIARSIVNSR---PINSTLELV 182 Query: 193 SLIQKTVYFS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 I+K + + + H AT++FQA+RI VN E+ + L + L+ GG L V+SF Sbjct: 183 EAIRKALPPQEIRKRKRHFATKTFQAIRIEVNGELSNIENFLNNVPDLLEIGGRLAVISF 242 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDRLVK F + + + I ++P++E++ N R+RSAK Sbjct: 243 HSLEDRLVKHFIKNSNK-----------------LRQIV-GPIIPSKEEIDENPRARSAK 284 Query: 311 LRAGMRT 317 LR R Sbjct: 285 LRIAERI 291 >gi|148243357|ref|YP_001228514.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. RCC307] gi|262825772|sp|A5GWA2|RSMH_SYNR3 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|147851667|emb|CAK29161.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. RCC307] Length = 299 Score = 319 bits (817), Expect = 6e-85, Method: Composition-based stats. Identities = 114/322 (35%), Positives = 167/322 (51%), Gaps = 38/322 (11%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPG-KVILDATFGAGGYSRSFCKMGS--NVIALD 65 MSS+ H H PVL ++V+ L P V+LDAT G GG+S + +I LD Sbjct: 1 MSSSFH-----HQPVLPQQVLEALAELPDEGVLLDATVGGGGHSSLLLDVHPGWQLIGLD 55 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125 +DP A + + + + E+ L + F+ Y PD+ V V+ DLGVSS Q+D +RGF Sbjct: 56 QDPAARAAAAQQLERFGERVQLVASNFA---AYTPDQPVVAVLADLGVSSHQLDVPERGF 112 Query: 126 SFQKSGPLDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 SF+ GPLDMRM+ G +A+ ++++ L +L GEE+ + RIA + + Sbjct: 113 SFRADGPLDMRMNTEGDGETAAALIDRLEENALADLLFHYGEERLSRRIARRL---KTEG 169 Query: 184 PFQ----TTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 P+ T L+ I ++ RIH ATRSFQALRI VN+E+ L L A Sbjct: 170 PWDDGERGTAALAYAIAGCYPPKQRHGRIHAATRSFQALRIAVNDELGVLETLLNDAPNW 229 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L+ GG + V+SFHSLEDRLVK F + + I++K ++ +++ Sbjct: 230 LEPGGRIAVISFHSLEDRLVKNRFKADE-----------------RLRVISRKPLIASEQ 272 Query: 299 DVAFNRRSRSAKLRAGMRTVER 320 + N R+RSAKLR R Sbjct: 273 EAEANPRARSAKLRVAERLSAE 294 >gi|332976677|gb|EGK13517.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Psychrobacter sp. 1501(2011)] Length = 347 Score = 319 bits (817), Expect = 6e-85, Method: Composition-based stats. Identities = 109/353 (30%), Positives = 179/353 (50%), Gaps = 39/353 (11%) Query: 9 MSSAIHHTIGD---------HVPVLLEKVIALL---------------NPAPGKVILDAT 44 M+ + + H VLL + +A + +P + +DAT Sbjct: 1 MTDTVSSAAANPSSPKADFSHETVLLYETVAAVLGKNPTKKSSKATDSDPKVSGIFVDAT 60 Query: 45 FGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD 101 FG GG+S+ + S+ + D+DP A++ +E + + ++ +F+ + + + Sbjct: 61 FGRGGHSKLLLESLSDDGQLFVFDKDPEAIAVAEEIAKS-DNRVTVVHDSFANITHCLNE 119 Query: 102 KG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLT 157 G V+G++ DLGVSS Q+D G RGFSF + G +DMRM S G S + + + ++L Sbjct: 120 HGITQVNGIMADLGVSSPQLDDGSRGFSFMRDGAIDMRMDTSRGQSVGEWLETVDEEELA 179 Query: 158 RILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQAL 217 +L GEE+ + RIA AI +Q + +T +L+ +I++ + HPAT+SFQA+ Sbjct: 180 NVLYDFGEERHSRRIARAI---KQMERYTSTLELAEVIKQA-HPKWQKGKHPATQSFQAM 235 Query: 218 RIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP 277 RIF+NNE+ ++ L+ + L G L V+SFHSLEDR +K+F S +P Sbjct: 236 RIFINNELGDIDSFLQQSLTLLAPEGQLAVISFHSLEDRRIKQFLQRHSRGQYPEDENLP 295 Query: 278 SNAHPAVFQSITK-KVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDDSFVH 329 P + +K K + P++ +V+ N RSRSA LR RT S +H Sbjct: 296 --MPPVRPRYFSKPKRIAPSKAEVSVNNRSRSAWLRVATRTDTPYNNAPSELH 346 >gi|223040364|ref|ZP_03610639.1| S-adenosyl-methyltransferase MraW [Campylobacter rectus RM3267] gi|222878322|gb|EEF13428.1| S-adenosyl-methyltransferase MraW [Campylobacter rectus RM3267] Length = 310 Score = 319 bits (817), Expect = 6e-85, Method: Composition-based stats. Identities = 95/301 (31%), Positives = 162/301 (53%), Gaps = 8/301 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76 HVPVLL++V+ VI+D T G GG+S + + N +IA D+D A++ E Sbjct: 4 PHVPVLLDEVLRAFEGIKSGVIVDCTLGYGGHSGAILEQNQNVNLIACDQDEEAINFSSE 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 ++ + ++ +F++ FS++ + + + G++ D+GVSS+Q+D +RGF + LDMR Sbjct: 64 RLKKFGQRAQIFKSKFSEILNKIEQTQIRGILADIGVSSLQLDKNERGFGLKSEN-LDMR 122 Query: 137 MS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M + SA DVVN + ++L RI GE ++ A IV+ RQ+ ++ + L+ +I Sbjct: 123 MDAQAKFSAYDVVNSYSARELERIFEGYGELPNPAKFAAKIVEARQNGEIKSAERLAQII 182 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + + AT +FQA+RI VNNE+ EL L+ E + ++ ++ FHSLED Sbjct: 183 --GLKGVNGRSVSAATLAFQAIRIEVNNELGELQNLLQGIEDSQIDECVVAIIGFHSLED 240 Query: 256 RLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 R+VK F + + + A+ + ++KK + P+ +V N RS AK+R Sbjct: 241 RIVKNKFKQWAQSCICPPQALKCTCGGDNALGKIVSKKAITPSAAEVKANPRSSCAKMRI 300 Query: 314 G 314 Sbjct: 301 F 301 >gi|301165427|emb|CBW24998.1| putative S-adenosyl-methyltransferase [Bacteriovorax marinus SJ] Length = 325 Score = 319 bits (817), Expect = 6e-85, Method: Composition-based stats. Identities = 108/322 (33%), Positives = 171/322 (53%), Gaps = 29/322 (9%) Query: 19 DHVPVLLEKVIALLNPAPGKV----ILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVS 72 H VL ++V+ +L ++ D TFGAGG++ + + NV ++D+DP A+ Sbjct: 5 KHYSVLNKEVVDILMEDSEQLQNIKFADMTFGAGGHTFALAESAKNVSVYSVDQDPDALK 64 Query: 73 CGQETMRDYK--EQFSLFQATFSQLQDYVP----DKGVDGVVFDLGVSSMQIDCGDRGFS 126 G+E + + E+ L F Q +++ + +G+V DLGVSS D GDRGFS Sbjct: 65 NGKENINELGLSERVFLHDMNFEQFPEFIRSSDSEMKFNGIVADLGVSSHHFDEGDRGFS 124 Query: 127 FQKSGPLDMRMSCSG---ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 F+ PLDMRM +A+D+VN + +DL +I GEEK RI +I++ R+SA Sbjct: 125 FRFDAPLDMRMDVDNDELETAADIVNNYSKEDLEKIFFTYGEEKFTHRIVKSILEHRESA 184 Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 P +TT+ L +I + +I+PAT+ FQALRI VN E++ L + + L+ Sbjct: 185 PIETTKQLEKIIIDCYPKKLQFGKINPATKCFQALRIKVNKELDVLENVIPGLLELLEIN 244 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G L +++FHSLEDR+VK F + ++ KK ++P+ ++ Sbjct: 245 GRLAIITFHSLEDRIVKNLFKDAVQSDVP-------------YELYNKKPILPSHGELEE 291 Query: 303 NRRSRSAKLRAGMRTVERSIED 324 N RSRSAKLR + E+ ++ Sbjct: 292 NPRSRSAKLRVITKINEKKSKN 313 >gi|227875248|ref|ZP_03993390.1| S-adenosyl-methyltransferase [Mobiluncus mulieris ATCC 35243] gi|307700815|ref|ZP_07637840.1| S-adenosyl-methyltransferase MraW [Mobiluncus mulieris FB024-16] gi|227844153|gb|EEJ54320.1| S-adenosyl-methyltransferase [Mobiluncus mulieris ATCC 35243] gi|307613810|gb|EFN93054.1| S-adenosyl-methyltransferase MraW [Mobiluncus mulieris FB024-16] Length = 340 Score = 318 bits (816), Expect = 6e-85, Method: Composition-based stats. Identities = 113/324 (34%), Positives = 180/324 (55%), Gaps = 12/324 (3%) Query: 11 SAIHHTIGDHVPVLLEKVIALLNPA----PGKVILDATFGAGGYSRSFCKMGSNV--IAL 64 S I T H PVL+++ + LL PA V++DAT G GG+S + + ++ I + Sbjct: 2 STITPTAAIHQPVLVQRCVELLAPALIPVERPVLVDATVGLGGHSEALLQRFPHLQIIGI 61 Query: 65 DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCG 121 DRD A + + + + + + AT+ QL + + ++G VDG++ DLGVSS+Q+D Sbjct: 62 DRDGEARALAGKRLSVFGSRIEIVAATYGQLAEILAERGLETVDGILADLGVSSLQLDET 121 Query: 122 DRGFSFQ-KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 RGF++ PLDMRM S GI+A+ + + ++ R+L GEEK A +IA IVK Sbjct: 122 ARGFAYAIPEAPLDMRMDQSRGITAAQFIATTSETEIARVLRTYGEEKFARQIARNIVKT 181 Query: 180 RQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R+ P +TT +L LI+ T+ ++ + +PA R+FQALR+ VN+E+ +L L +A A Sbjct: 182 REVTPLRTTGELVDLIRATIPAPARRHGGNPAKRTFQALRVAVNDELRDLEVFLTAALDA 241 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L+ GG L+V S+ SLEDRLVK+ F + + + Q +T+ Sbjct: 242 LRVGGRLVVESYQSLEDRLVKQAFTPGIHPEVPRGLPVIPTGYEPWLQDLTRGAEKADAL 301 Query: 299 DVAFNRRSRSAKLRAGMRTVERSI 322 ++ N RS+S +LRA + E + Sbjct: 302 ELQRNSRSQSVRLRAVAKLREMAP 325 >gi|317968143|ref|ZP_07969533.1| 16S rRNA m(4)C1402 methyltranserfase [Synechococcus sp. CB0205] Length = 292 Score = 318 bits (816), Expect = 7e-85, Method: Composition-based stats. Identities = 110/307 (35%), Positives = 163/307 (53%), Gaps = 32/307 (10%) Query: 22 PVLLEKVIA-------LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVS 72 PVL +V+A LL G +++D T G GG+S + ++ LD+DP A Sbjct: 2 PVLAAQVLASFTALEPLLQERGGGLLIDCTLGGGGHSALLLEAHPGLKLVGLDQDPTARQ 61 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + + ++ S+ F+ DY P + V+ DLGVSS Q+D +RGFSF+ GP Sbjct: 62 AAAERLEPFGDRVSIVATNFA---DYQPQEPALAVMADLGVSSPQLDVAERGFSFRHDGP 118 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTTQD 190 LDMRM+ G +A++++ + +L ++ GEE+ + RIA I + + PF T Sbjct: 119 LDMRMNPQAGETAAELIERLEETELADLIYAYGEERLSRRIARKIKQHLAEQGPFAGTDA 178 Query: 191 LSSLIQKT-VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L+ L+ ++ RIHPATR+FQALRI VN+E+ L + L+ A L+ GGL+ V+S Sbjct: 179 LAYLVAGCYAPKARRGRIHPATRTFQALRIAVNDELGVLDRLLQQAPDWLEPGGLMGVIS 238 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDR VK F+S Q +T+K +E+ + N RSRSA Sbjct: 239 FHSLEDRRVKTAFSSDE-----------------RLQRVTRKPETAGEEEQSSNPRSRSA 281 Query: 310 KLRAGMR 316 K R R Sbjct: 282 KWRVARR 288 >gi|306836499|ref|ZP_07469470.1| S-adenosyl-methyltransferase MraW [Corynebacterium accolens ATCC 49726] gi|304567589|gb|EFM43183.1| S-adenosyl-methyltransferase MraW [Corynebacterium accolens ATCC 49726] Length = 346 Score = 318 bits (816), Expect = 7e-85, Method: Composition-based stats. Identities = 113/317 (35%), Positives = 165/317 (52%), Gaps = 20/317 (6%) Query: 20 HVPVLLEKVIALLNPA-----PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVS 72 HVPV+ E++ LL P V++DAT GAGG+S F + VI +DRD A+ Sbjct: 16 HVPVMRERMAELLRPGVEAAGSQAVLVDATLGAGGHSEYFLQTFPQARVIGVDRDEQALQ 75 Query: 73 CGQETMRDYKEQFSLFQATFSQLQ-----------DYVPDKGVDGVVFDLGVSSMQIDCG 121 + + +F A F +L D G+ G +FDLGVSSMQ+D Sbjct: 76 NASARLEPFGPRFCAVNARFDELGTAIAQGEGDIFDAARAHGIAGALFDLGVSSMQLDQA 135 Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGF+++ PLDMRM S G++A+DV+N + DL RIL G+E+ A +IA A++K R Sbjct: 136 ERGFAYKTDAPLDMRMDPSHGLTAADVLNSYSHGDLARILKTYGDERFAGKIASAVLKER 195 Query: 181 QSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 + PF T+ L L+ T+ + + HPA R+FQALR+ VN E+E + L AL Sbjct: 196 EKEPFSTSGRLVELLYSTIPAATRRTGGHPAKRTFQALRVEVNRELEAIENVLPVITSAL 255 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 G + +S+ SLEDRLVK F S + F ++T+ +Q + Sbjct: 256 SIGARAVFMSYQSLEDRLVKAAFKELSTSTTPAGLPMDLPGTAPEFATVTRGAEKASQAE 315 Query: 300 VAFNRRSRSAKLRAGMR 316 V N R+ S ++RA R Sbjct: 316 VEENSRAASVRVRALER 332 >gi|269978137|ref|ZP_06185087.1| S-adenosyl-methyltransferase MraW [Mobiluncus mulieris 28-1] gi|269933646|gb|EEZ90230.1| S-adenosyl-methyltransferase MraW [Mobiluncus mulieris 28-1] Length = 340 Score = 318 bits (816), Expect = 7e-85, Method: Composition-based stats. Identities = 113/323 (34%), Positives = 180/323 (55%), Gaps = 12/323 (3%) Query: 11 SAIHHTIGDHVPVLLEKVIALLNPA----PGKVILDATFGAGGYSRSFCKMGSNV--IAL 64 S I T H PVL+++ + LL PA V++DAT G GG+S + + ++ I + Sbjct: 2 STITPTAAIHQPVLVQRCVELLAPALIPVERPVLVDATVGLGGHSEALLQRFPHLQIIGI 61 Query: 65 DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCG 121 DRD A + + + + + + AT+ QL + + ++G VDG++ DLGVSS+Q+D Sbjct: 62 DRDGEARALAGKRLSVFGSRIEIVAATYGQLAEILAERGLETVDGILADLGVSSLQLDET 121 Query: 122 DRGFSFQ-KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 RGF++ PLDMRM S GI+A+ + + ++ R+L GEEK A +IA IVK Sbjct: 122 ARGFAYAIPEAPLDMRMDQSRGITAAQFIATTSETEIARVLRTYGEEKFARQIARNIVKT 181 Query: 180 RQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R+ P +TT +L LI+ T+ ++ + +PA R+FQALR+ VN+E+ +L L +A A Sbjct: 182 REVTPLRTTGELVDLIRATIPAPARRHGGNPAKRTFQALRVAVNDELRDLEVFLTAALDA 241 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L+ GG L+V S+ SLEDRLVK+ F + + + Q +T+ Sbjct: 242 LRVGGRLVVESYQSLEDRLVKQAFTPGIHPEVPRGLPVIPTGYEPWLQDLTRGAEKADAL 301 Query: 299 DVAFNRRSRSAKLRAGMRTVERS 321 ++ N RS+S +LRA + E + Sbjct: 302 ELQRNSRSQSVRLRAVAKLREMA 324 >gi|162148953|ref|YP_001603414.1| S-adenosyl-methyltransferase MraW [Gluconacetobacter diazotrophicus PAl 5] gi|209545294|ref|YP_002277523.1| S-adenosyl-methyltransferase MraW [Gluconacetobacter diazotrophicus PAl 5] gi|263455983|sp|A9H0G9|RSMH_GLUDA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|161787530|emb|CAP57126.1| S-adenosyl-methyltransferase mraW [Gluconacetobacter diazotrophicus PAl 5] gi|209532971|gb|ACI52908.1| S-adenosyl-methyltransferase MraW [Gluconacetobacter diazotrophicus PAl 5] Length = 338 Score = 318 bits (815), Expect = 8e-85, Method: Composition-based stats. Identities = 117/298 (39%), Positives = 168/298 (56%), Gaps = 14/298 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQETM 78 H+PV+L +V+ +L P G LD TFG GGY+R+ + A+DRDP A+ GQ Sbjct: 9 HIPVMLAEVLEMLCPRDGATYLDGTFGGGGYARAILGAARCTLWAIDRDPAAIRRGQALQ 68 Query: 79 RDYKE-----QFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130 + ++ + + Q F +Q + + GV DGVV DLGVSS Q+D +RGFSF+ Sbjct: 69 AELRDAEGGMRLHMLQGGFGDMQGLLAESGVHSLDGVVLDLGVSSFQLDEVERGFSFRTD 128 Query: 131 GPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 GPLDMRM +G +A+D+VN DL I+ GEE+ + R+A AIV R AP TT Sbjct: 129 GPLDMRMGDTGPTAADIVNTMGESDLADIIYEYGEERMSRRVARAIVAARAQAPITTTFQ 188 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ +I+ V + + I PATRSFQ +RI VN+E+ ++ GL A L GG L+VVSF Sbjct: 189 LADIIRSVVPGDR-SGIDPATRSFQGIRIHVNDELGQIVTGLEQALALLAPGGRLVVVSF 247 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIP----SNAHPAVFQSITKKVVVPTQEDVAFNR 304 HSLEDRLVK+ +G++ P + F+ +T + + P + + N Sbjct: 248 HSLEDRLVKQALNRAAGRMPGPSRHDPRSMRAEQAAPDFRLLTSRALRPGETECRANP 305 >gi|188527446|ref|YP_001910133.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori Shi470] gi|226709922|sp|B2UTC1|RSMH_HELPS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|188143686|gb|ACD48103.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori Shi470] Length = 308 Score = 318 bits (815), Expect = 8e-85, Method: Composition-based stats. Identities = 113/304 (37%), Positives = 173/304 (56%), Gaps = 14/304 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H VLL++V+ P V++D T G GG+S++ + +I +D+D FA +E Sbjct: 8 HQSVLLQEVLQAFAPLEEGVLIDCTLGLGGHSKAILSQKPHLKLIGIDKDKFAQEIAKER 67 Query: 78 MRDYKEQFSLFQATFSQ-LQDYVP--DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++ ++ +++L F++ ++ + DK + GV+ DLGVSS+Q+D RGF+F S LD Sbjct: 68 LKAFEGRYNLLSGGFAKRFKEALEMHDKEIKGVLVDLGVSSLQLDDDSRGFNF-HSHALD 126 Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM S ++A V+N V L +I GE K+ +IAH I +RR PF+ +DLS Sbjct: 127 MRMDLESDLNAQKVINSYPVVALEKIFKDYGEIKEYKKIAHKIAERRAKKPFKDAKDLSD 186 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 + SKN +IHPAT FQA+RI VN+E+EEL + L+ A +L V+SFHSL Sbjct: 187 FLSS---LSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCARNL--KEAILCVISFHSL 241 Query: 254 EDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 ED LVK F + + + + A+ + +TKK + P+ E++ NRRSRSAK+ Sbjct: 242 EDALVKNAFKDYAKNCICDPSSFKCTCSNNHALGEILTKKPITPSPEEIKNNRRSRSAKM 301 Query: 312 RAGM 315 R Sbjct: 302 RVFQ 305 >gi|91094747|ref|XP_971437.1| PREDICTED: similar to s-adenosyl-methyl transferase mraw [Tribolium castaneum] gi|270010790|gb|EFA07238.1| hypothetical protein TcasGA2_TC010595 [Tribolium castaneum] Length = 451 Score = 318 bits (815), Expect = 8e-85, Method: Composition-based stats. Identities = 120/330 (36%), Positives = 179/330 (54%), Gaps = 30/330 (9%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQ 75 HVPV++++V+ L P + ILD TFGAGG+SR + N ++ALDRDP A Q Sbjct: 121 APHVPVMVQEVLHFLKPEGNQTILDMTFGAGGHSRRILEQAPNVKLLALDRDPVAFGYAQ 180 Query: 76 ETMRDYKEQFSLFQATFSQLQDYV-----PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + ++ + + FS++ + + +D ++FD G SSMQ D RGFS + Sbjct: 181 KLAEEFPNRVTPLLGRFSEVPELLSLNKIRQNSIDAILFDFGCSSMQFDTPSRGFSVSHN 240 Query: 131 GPLDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APF 185 GPLDMRM +A+DV+ +A +DL +I+ + GEEK+A +IA A+++ R Sbjct: 241 GPLDMRMDSGRFPEDPTAADVLAKATEEDLYKIIKVYGEEKKARKIARAVIEARYLFKTL 300 Query: 186 QTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 TT++L+ L+ H AT++FQALRIFVNNE+ E+ GL A K LK Sbjct: 301 STTEELADLVDSVFSGEIRLDKLQRPSHNATKTFQALRIFVNNELNEINYGLIIAHKYLK 360 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-------------PAVFQS 287 GG ++ ++FHSLED +VK+ + ++H + + S Sbjct: 361 LGGRVVTLTFHSLEDTIVKRHLLGNLIANTPNPLPLKYSSHSFDVDGQIVKEVMESNWLS 420 Query: 288 ITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 +TK V+VP E+V N RSRSAKLRA +R Sbjct: 421 LTKHVLVPKYEEVENNPRSRSAKLRAAIRV 450 >gi|332283258|ref|YP_004415169.1| S-adenosyl-methyltransferase MraW [Pusillimonas sp. T7-7] gi|330427211|gb|AEC18545.1| S-adenosyl-methyltransferase MraW [Pusillimonas sp. T7-7] Length = 357 Score = 318 bits (815), Expect = 9e-85, Method: Composition-based stats. Identities = 120/332 (36%), Positives = 181/332 (54%), Gaps = 31/332 (9%) Query: 20 HVPVLLEKVIALLNP------------------APGKVILDATFGAGGYSRSFCKMGS-- 59 H PVLLE + L V +D TFG GG+SR S Sbjct: 5 HRPVLLEPTVNALVDPGFGVKGKRSQMRDDSQALADGVFVDGTFGRGGHSRLLLSRLSPD 64 Query: 60 -NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSS 115 ++ D+DP A++ Q +R E+ + + F+ + + G V+GV+ DLG+SS Sbjct: 65 AKLVVFDKDPEAIAAAQA-LRQEDERVVVVHSGFANMPAQLQALGITEVNGVMLDLGISS 123 Query: 116 MQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAH 174 QID RGFSF + GPLDMRM S G++A+ + Q ++ +L ++ GEE+ A +IA Sbjct: 124 PQIDDASRGFSFMREGPLDMRMDTSSGLTAAQWLAQVDIDELKEVIAKYGEERFAFQIAK 183 Query: 175 AIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234 A++ RR+S P +TT DL+ L+ V ++ HPATR+FQA+RI++N E++ELA L + Sbjct: 184 AVIARRESRPLRTTLDLAELVASVV-RTREKGQHPATRTFQAIRIYLNQELQELALALAA 242 Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKV 292 + L GG L V+SFHSLEDR+VK+ ASR V A ++ + + S+ + Sbjct: 243 VLRVLAPGGRLAVISFHSLEDRMVKQCIAAASRPAAVHARLPILEKDMPQPILNSLGR-- 300 Query: 293 VVPTQEDVAFNRRSRSAKLRAGMRTVERSIED 324 ++PT+++ N R+RSA LR RT D Sbjct: 301 ILPTEQESKENVRARSAVLRVAERTSTPLPPD 332 >gi|308182803|ref|YP_003926930.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori PeCan4] gi|308064988|gb|ADO06880.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori PeCan4] Length = 308 Score = 318 bits (815), Expect = 9e-85, Method: Composition-based stats. Identities = 110/304 (36%), Positives = 172/304 (56%), Gaps = 14/304 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H VLL++V+ P V++D T G GG+S++ + +I +D+D FA +E Sbjct: 8 HQSVLLQEVLQAFAPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFAQEIAKER 67 Query: 78 MRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++ ++ +++L F++ ++ + + GV+ DLGVSS+Q+D +RGF+F S LD Sbjct: 68 LKAFEGRYNLLSGGFAKRFKEALETHDKEIKGVLVDLGVSSLQLDDDNRGFNF-HSHALD 126 Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM G ++A V+N + L +I GE ++ +IAH I +RR PF+ +DLS Sbjct: 127 MRMDLEGDLNAQKVINSYPIVALEKIFKDYGEIREYKKIAHKIAERRAKKPFKDAKDLSD 186 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 + SKN +IHPAT FQA+RI VN+E+EEL + L+ A G +L V+SFHSL Sbjct: 187 FLSS---LSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCARNL--KGAILCVISFHSL 241 Query: 254 EDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 ED LVK F + + + + A+ +TKK + P+ E++ NRRSRSAK+ Sbjct: 242 EDALVKNSFKDYAKNCVCDPLSFKCTCSNNHALGAILTKKPITPSPEEIKNNRRSRSAKM 301 Query: 312 RAGM 315 R Sbjct: 302 RVFQ 305 >gi|328952338|ref|YP_004369672.1| Ribosomal RNA small subunit methyltransferase H [Desulfobacca acetoxidans DSM 11109] gi|328452662|gb|AEB08491.1| Ribosomal RNA small subunit methyltransferase H [Desulfobacca acetoxidans DSM 11109] Length = 303 Score = 318 bits (815), Expect = 9e-85, Method: Composition-based stats. Identities = 105/310 (33%), Positives = 165/310 (53%), Gaps = 23/310 (7%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPFAVSCGQETMRD 80 ++++V+A L PG + +D T G GG++ + V+ LD+D A+ + Sbjct: 1 MVQEVLAELQCQPGHIYVDGTVGLGGHAEAILLRSSPTGQVVGLDQDSAALQIAALRLLP 60 Query: 81 YKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 Y + L + ++QL + + + VDG++ DLG+S+ Q+ RGFSF+ PLDMRM Sbjct: 61 YGPRVYLIHSCYTQLAEILQQRRIESVDGILLDLGISTEQLKSSGRGFSFKGKEPLDMRM 120 Query: 138 SC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 + +A+D++N L+R+ LGEE+ A RIA IV+ RQ AP TT L +I Sbjct: 121 NPDVQTTTAADLLNTEPEAQLSRMFWELGEERWARRIARNIVRARQQAPLITTNQLVEVI 180 Query: 196 QKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 +++ RIHPATR FQALRI VN E+E+++ + A K L GG L+++ +HSLE Sbjct: 181 LRSLPPKTGMKRIHPATRVFQALRIAVNQELEKISAFIPQAIKVLAPGGRLVIIDYHSLE 240 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 DR+VK+ F R KK ++P + +VA N +RSAK+R Sbjct: 241 DRIVKRAFIEAERAGSVRRRY--------------KKPLIPGEAEVASNPSARSAKMRTV 286 Query: 315 MRTVERSIED 324 + ++ Sbjct: 287 EKLPASPDKN 296 >gi|108804337|ref|YP_644274.1| methyltransferase [Rubrobacter xylanophilus DSM 9941] gi|123069097|sp|Q1AVW6|RSMH_RUBXD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|108765580|gb|ABG04462.1| methyltransferase [Rubrobacter xylanophilus DSM 9941] Length = 312 Score = 317 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 120/319 (37%), Positives = 178/319 (55%), Gaps = 19/319 (5%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72 H PV+LE+ + L P+ G V++DATFG GG+S + G V+ +DRDP A Sbjct: 2 AAAQHRPVMLEEAVRALAPSGGDVVVDATFGGGGHSARVLRELGPGGRVVGIDRDPEARG 61 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + D +FS Q + ++ + +G D ++FDLG+SS Q+D RGFS+ + Sbjct: 62 RAERLLGD--PRFSFEQGPYDEVLWRMVGRGERADALLFDLGLSSFQVDDPRRGFSYTRE 119 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEK--QASRIAHAIVKRRQSAPFQT 187 GPLDMRM SG SA+D +N A ++ +L G+ QA R+A I++RR P +T Sbjct: 120 GPLDMRMDPGSGPSAADFLNAAGEAEIAGVLSEYGDVPRAQARRVAREILRRR---PLRT 176 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T DL ++ V ++ +PA R FQA+RI VN+E+ L + L +AE+ L GG L+V Sbjct: 177 TADLREAVRAAVGWAPRGG-NPAKRVFQAVRIRVNDELGGLRRALEAAERLLVPGGRLVV 235 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVV-VPTQEDVAFNRR 305 +SFHS EDRLVK+F A R G+ + VF+ + V P++ +VA N R Sbjct: 236 ISFHSGEDRLVKRFIAEREGRCTCPPELPVCVCGARPVFR---RGPVLRPSEREVAENPR 292 Query: 306 SRSAKLRAGMRTVERSIED 324 S A++R RT E + E Sbjct: 293 SAPARMRVAFRTAEPAREA 311 >gi|86153556|ref|ZP_01071760.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp. jejuni HB93-13] gi|85843282|gb|EAQ60493.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp. jejuni HB93-13] Length = 310 Score = 317 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 101/302 (33%), Positives = 158/302 (52%), Gaps = 9/302 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76 H+PVLL +V + LD T G GG+S + K ++ IA D+D A+ ++ Sbjct: 4 PHIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKNHPDLKFIACDQDQQALEFSKK 63 Query: 77 TMRDYKEQFSLFQATFSQ-LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 ++D+ + + Q+ FS+ L+ + + G++ D+GVSS Q+D +RGFS LDM Sbjct: 64 RLKDFHNRITFVQSNFSEVLEKISHKEELRGILADIGVSSFQLDNNERGFSVNSD-FLDM 122 Query: 136 RMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM+ S ISA +++N + LT I GE A IA I R P ++ ++L + Sbjct: 123 RMNQNSKISAYEIINTYTKEQLTSIFKDYGELHDAHFIAEKICLERSKNPIKSAKELYQI 182 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 I K + +I AT +FQA+RI VN E++ L L E +L ++SFHSLE Sbjct: 183 IGK--GKQNHRKISKATLAFQAIRIEVNQELKVLKDFLGHLENLKPKNCILAIISFHSLE 240 Query: 255 DRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 DR+VK FF S + + + ++ Q ITKK + ++E++ N RS AK+R Sbjct: 241 DRIVKIFFKKWSKNCICDEKIMRCECGNNHSLGQIITKKAISASKEELLKNSRSSCAKMR 300 Query: 313 AG 314 A Sbjct: 301 AF 302 >gi|154174311|ref|YP_001408418.1| S-adenosyl-methyltransferase MraW [Campylobacter curvus 525.92] gi|263445746|sp|A7GYX6|RSMH_CAMC5 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|112802943|gb|EAU00287.1| S-adenosyl-methyltransferase MraW [Campylobacter curvus 525.92] Length = 308 Score = 317 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 95/305 (31%), Positives = 163/305 (53%), Gaps = 12/305 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQE 76 H+ VLL++V+ + +D T G GG+S + + +IA D+D A+ ++ Sbjct: 4 PHISVLLDEVLDAFHGLS-GTFIDCTLGYGGHSGALLEQNKNLRLIACDKDDEAIEFSKK 62 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + ++ ++ ++++ FSQL + V G++ D+GVSS+Q+D +RGFS L Sbjct: 63 RLENFGDRVKIYKSDFSQLIKVLSTDELKNVRGILADIGVSSLQLDKNERGFSINSD-TL 121 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + SA+DV+N + ++L I GE A +A IV R + ++L+ Sbjct: 122 DMRMDRACEFSAADVINSYSQQNLAEIFSKYGELSNAKALAAKIVSARNLKKITSAKELA 181 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 S+I ++ + PA +FQA+R+ VN+E+ EL + L S + A + ++SFHS Sbjct: 182 SIIGTGRVNGRS--VSPAILAFQAIRVEVNDELGELNRLLESIKSANLKECKVAIISFHS 239 Query: 253 LEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 LEDR+VK F S + + + A+ + +TKK +V +Q+++A N RS SAK Sbjct: 240 LEDRIVKNTFKSWAQSCICPPNAMRCKCGNDHAIGKILTKKAIVASQKEIAANPRSSSAK 299 Query: 311 LRAGM 315 +R Sbjct: 300 MRVFE 304 >gi|25028617|ref|NP_738671.1| S-adenosyl-methyltransferase MraW [Corynebacterium efficiens YS-314] gi|259507675|ref|ZP_05750575.1| S-adenosyl-methyltransferase MraW [Corynebacterium efficiens YS-314] gi|30173070|sp|Q8FNT2|RSMH_COREF RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|23493903|dbj|BAC18871.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] gi|259164722|gb|EEW49276.1| S-adenosyl-methyltransferase MraW [Corynebacterium efficiens YS-314] Length = 338 Score = 317 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 107/320 (33%), Positives = 171/320 (53%), Gaps = 20/320 (6%) Query: 20 HVPVLLEKVIALLNPA-----PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVS 72 HVPV+ +++ AL+ VI+DAT GAGG++ F + +VI LDRD A+ Sbjct: 12 HVPVMRDRMAALIADHVREMGDRAVIVDATLGAGGHAEHFLTVFPEAHVIGLDRDENALR 71 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVP-----------DKGVDGVVFDLGVSSMQIDCG 121 E + + ++F + F L + +G+ G +FDLGVSSMQ+D Sbjct: 72 DAGERLARFGDRFLGVKTRFDGLSQVLATGEGDILDLARKEGISGALFDLGVSSMQLDQV 131 Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGF+++ PLDMRM + GI+A+D++N + D+ R+L G+E+ A +IA A++K R Sbjct: 132 ERGFAYRTDAPLDMRMDPTQGITAADILNTYSHGDIARVLKTYGDERFAGKIASAVLKER 191 Query: 181 QSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 + PF T+ L L+ T+ + + HPA R+FQALR+ VN E+E L+ L AL Sbjct: 192 EKEPFTTSARLVELLYDTIPAATRRTGGHPAKRTFQALRVEVNRELESLSNVLPQITDAL 251 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 GG + +S+ S ED+LVK+FF + + F+ +T+ ++ + Sbjct: 252 NVGGRAVFMSYQSHEDKLVKRFFTELTTSKTPPGLPVDLPGTAPRFRQVTRGAETASEAE 311 Query: 300 VAFNRRSRSAKLRAGMRTVE 319 + N R+ K+RA R E Sbjct: 312 IEENPRAAPVKVRAIERIAE 331 >gi|194476804|ref|YP_002048983.1| methyltransferase [Paulinella chromatophora] gi|171191811|gb|ACB42773.1| methyltransferase [Paulinella chromatophora] Length = 283 Score = 317 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 117/301 (38%), Positives = 166/301 (55%), Gaps = 28/301 (9%) Query: 22 PVLLEKVIALLNPAPG-KVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQETM 78 PVL +V+ P VILD T G GG+S + I LD+DP A + + Sbjct: 2 PVLASQVVQAFASLPPYGVILDCTVGGGGHSSLLLNNHPKLRIIGLDQDPDAWLKANQYL 61 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138 ++ + L + F+ D+VP + + GV+ DLGVSS Q++ RGFSF+ GPLDMRM+ Sbjct: 62 ASFRYRTRLIKTNFA---DFVPVEPLSGVLVDLGVSSHQLEVAQRGFSFRFEGPLDMRMN 118 Query: 139 CS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK 197 S G +A+++VN K+L ++ GE++ + RIA IV++R PF +T+DL+ +I Sbjct: 119 PSKGETAAELVNYLGEKELADLIFSYGEDRFSRRIARRIVQKR---PFNSTKDLAYVIAG 175 Query: 198 TV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 S+ RIHPATR+FQALRI VNNE+E L L L GG++ ++SFHSLEDR Sbjct: 176 CYSPKSRRGRIHPATRTFQALRIAVNNEMEVLDHLLSRIPDWLIPGGIVAIISFHSLEDR 235 Query: 257 LVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 VK+ F + + IT K +V + + N RSRSAKLR R Sbjct: 236 RVKQAFLTDE-----------------RLERITNKPLVADENERNDNSRSRSAKLRIAKR 278 Query: 317 T 317 T Sbjct: 279 T 279 >gi|332670119|ref|YP_004453127.1| S-adenosyl-methyltransferase MraW [Cellulomonas fimi ATCC 484] gi|332339157|gb|AEE45740.1| S-adenosyl-methyltransferase MraW [Cellulomonas fimi ATCC 484] Length = 337 Score = 317 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 115/323 (35%), Positives = 187/323 (57%), Gaps = 12/323 (3%) Query: 20 HVPVLLEKVIALLNPAP---GKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCG 74 H PVLL++ + LL PA G V++D+T G GG++ + +V + +DRDP A++ Sbjct: 13 HTPVLLQRCLDLLAPALAADGSVMVDSTLGMGGHTEGVLRAFPHVRVVGIDRDPQALALA 72 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + ++F+ A + ++ + + G+D GV+ DLGVSS+Q+D +RGFS+ Sbjct: 73 GRRLAPFGDRFTGVHAVYDEIGEVLDGLGIDHVQGVLMDLGVSSLQLDERERGFSYAHDA 132 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S G +A+DVVN + +DL R+L + GEE+ A+RIA ++V+ R+ AP T + Sbjct: 133 PLDMRMDASRGQTAADVVNGYDERDLARVLRVYGEERFAARIARSVVRAREKAPLTRTGE 192 Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L L++ ++ + + HPA R+FQALRI VN E+E L + L ++ +AL GG ++V + Sbjct: 193 LVDLVRASIPAATRKTGGHPAKRTFQALRIEVNGELEVLERALPASVEALAVGGRIVVEA 252 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 +HSLEDRLVK+ A+ + + H + +T+ + ++A N R++S Sbjct: 253 YHSLEDRLVKRTLAAGATSSAPPDLPVEPETHAPYLRLVTRGAEEADEAELARNPRAQSV 312 Query: 310 KLRAGMRTVERSIEDDSFVHLPR 332 +LRA R R D P Sbjct: 313 RLRAAERI--RPTPDHLRGPQPG 333 >gi|296081823|emb|CBI20828.3| unnamed protein product [Vitis vinifera] Length = 324 Score = 317 bits (813), Expect = 1e-84, Method: Composition-based stats. Identities = 110/328 (33%), Positives = 168/328 (51%), Gaps = 38/328 (11%) Query: 17 IGDHVPVLLEKVIA-------LLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDR 66 HVPV+L +V+ + +P + +D T GA G+S + + + + +D Sbjct: 6 TATHVPVMLGEVLEVFSSFSSSSSSSPLRSFVDCTLGAAGHSSAIIQAHPELELYVGMDV 65 Query: 67 DPFAVSCGQETMRD------------YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 DP A Q +R + F ++ ++ + + GVDG++ DLG+S Sbjct: 66 DPIAHEKAQARIRSLCGDSSHLKAHTFMRNFKNIKSVLREVDEELLSSGVDGILMDLGMS 125 Query: 115 SMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIA 173 SMQ++ +RGFS +GPLDMRM ++A D++N ++ RIL GEE + Sbjct: 126 SMQVNNAERGFSVLANGPLDMRMDPQASLTAEDILNSWPDTEVGRILREYGEESNWRSLQ 185 Query: 174 HAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNR---IHPATRSFQALRIFVNNEIEELAQ 230 + IVK R +T +L LI+KT ++ R I ATR FQALRI VN+E++ L Sbjct: 186 NKIVKARLFGGLHSTGELVDLIRKTTPRTRGGRQGWIKTATRVFQALRIAVNDELKTLED 245 Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF--QSI 288 L + + L GG L V+SFHSLEDR+VK+ F +I SN + + Sbjct: 246 SLYACFECLTPGGRLAVISFHSLEDRIVKQTF----------LDIINSNGEDERWNGTIL 295 Query: 289 TKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 TK+ + P++E+ NRRSRSAKLR + Sbjct: 296 TKRPITPSEEEERLNRRSRSAKLRVIQK 323 >gi|15611713|ref|NP_223364.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori J99] gi|8134818|sp|Q9ZLD4|RSMH_HELPJ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|4155209|gb|AAD06233.1| putative [Helicobacter pylori J99] Length = 308 Score = 317 bits (813), Expect = 1e-84, Method: Composition-based stats. Identities = 110/311 (35%), Positives = 174/311 (55%), Gaps = 14/311 (4%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70 + H VLL++V+ P +++D T G GG+S++ + +I +D+D FA Sbjct: 1 MQEIENLHQSVLLQEVLQAFTPLEEGILIDCTLGLGGHSKAILSQKPHLKLIGIDKDKFA 60 Query: 71 VSCGQETMRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSF 127 +E +++++ +++L F++ ++ + G + GV+ DLGVSS+Q+D +RGF+F Sbjct: 61 QEIAKERLKEFEGRYNLLSGGFAKRFKEALEIHGERIKGVLVDLGVSSLQLDDDNRGFNF 120 Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 + LDMRM S ++A V+N V L +I GE K+ +IAH I +RR PF+ Sbjct: 121 RS-HALDMRMDLESELNAQKVINSYPVVALEKIFRDYGEIKEYKKIAHKIAERRAKKPFK 179 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 +DLS + SKN +IHPAT FQA+RI VN+E+EEL + L+ A +L Sbjct: 180 DAKDLSEFLSS---LSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCARNL--KEAILC 234 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 V+SFHSLED LVK F + + + + A+ +TKK + P+ E++ NR Sbjct: 235 VISFHSLEDALVKNAFKDYAKNCICDPSSFKCACSNNHALGAILTKKPITPSPEEIKNNR 294 Query: 305 RSRSAKLRAGM 315 RSRSAK+R Sbjct: 295 RSRSAKMRVFQ 305 >gi|294506454|ref|YP_003570512.1| S-adenosyl-methyltransferase mraW [Salinibacter ruber M8] gi|294342782|emb|CBH23560.1| S-adenosyl-methyltransferase mraW [Salinibacter ruber M8] Length = 336 Score = 317 bits (813), Expect = 1e-84, Method: Composition-based stats. Identities = 112/323 (34%), Positives = 171/323 (52%), Gaps = 20/323 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H PVL V A L +DAT G GG++R+ + V+ +DRDP A+ ++ Sbjct: 24 HAPVLSHDVQARLVTDASGRYVDATLGGGGHARALLDVLDPDGVVLGIDRDPEALETARD 83 Query: 77 TMRDYKE--QFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + D +E +F TF L+D + + +DG++ DLGVSS QID +RGFSF+ G Sbjct: 84 RLADEREAGRFWAVHGTFGNLRDVLAAEDLIPIDGLLLDLGVSSHQIDVPERGFSFRDEG 143 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM G++A +VN +DL +L GEE +A +IA A+ R P TT+ Sbjct: 144 PLDMRMDPQRGLTAQQIVNGWGERDLRDVLREYGEESRAGQIARALCDAR---PLDTTRA 200 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ +++ V + + TR FQALRI VN E++EL Q L A + ++ GG + +S+ Sbjct: 201 LAEVVEDCVPPP--DTVKTLTRVFQALRIAVNAELDELEQALEQATEVVRTGGRIAAISY 258 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDR VK++ + + R + + P + + + + +V N R+RSA Sbjct: 259 HSLEDRRVKRYLRYGNFEGEPRRDLYGTLVAP--WAETPRGPIEAGESEVEANPRARSAH 316 Query: 311 LRAGMRTVERSIEDDSFVHLPRL 333 LR R +D++ LP L Sbjct: 317 LRVAER----RDDDEAGAPLPPL 335 >gi|319957176|ref|YP_004168439.1| s-adenosyl-methyltransferase mraw [Nitratifractor salsuginis DSM 16511] gi|319419580|gb|ADV46690.1| S-adenosyl-methyltransferase MraW [Nitratifractor salsuginis DSM 16511] Length = 319 Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats. Identities = 107/312 (34%), Positives = 172/312 (55%), Gaps = 11/312 (3%) Query: 9 MSSAIHHTI--GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IAL 64 MS+ T H+PVLL +V+ + V++D T G G+S + + + I + Sbjct: 1 MSTHSSKTSLQTPHIPVLLPEVMESFSSLDEGVLIDCTLGYAGHSSALLEAHPKLKLIGI 60 Query: 65 DRDPFAVSCGQETMRDYKEQFSLFQATFSQ-LQDYVPDKGVDGVVFDLGVSSMQIDCGDR 123 DRDP A+ + + Y+++ L +FS+ L + + V G++ D GVSS+Q+D +R Sbjct: 61 DRDPEALEFSAQRLAPYRDRVRLEHGSFSERLPSLIDQEPVVGILADFGVSSLQLDKKER 120 Query: 124 GFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 GFSF LDMRM+ + A DVVN ++ L + GE + A +A AIVK R + Sbjct: 121 GFSFASEN-LDMRMNPEAPLRAYDVVNGYPLERLEYLFREYGEIRPAGALAAAIVKARAN 179 Query: 183 APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 AP + Q+L+ L + + + HPAT+ FQA+RI VN+E+ E+ + L + E AG Sbjct: 180 APISSAQELAELAKTVLRGK--GKTHPATQMFQAIRIEVNDELGEIERLLDTLEAKRPAG 237 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDV 300 ++ +++FHSLEDRLVK F + S K + + A+ + +++K ++E++ Sbjct: 238 AIVSLITFHSLEDRLVKNRFRAWSQKCICPPEAIRCTCGGNHALGEMLSRKPRSASKEEL 297 Query: 301 AFNRRSRSAKLR 312 N RSRSAKLR Sbjct: 298 RSNPRSRSAKLR 309 >gi|227503272|ref|ZP_03933321.1| S-adenosyl-methyltransferase MraW [Corynebacterium accolens ATCC 49725] gi|227075775|gb|EEI13738.1| S-adenosyl-methyltransferase MraW [Corynebacterium accolens ATCC 49725] Length = 346 Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats. Identities = 112/317 (35%), Positives = 164/317 (51%), Gaps = 20/317 (6%) Query: 20 HVPVLLEKVIALLNPA-----PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVS 72 HVPV+ E++ LL P V++DAT GAGG+S F + VI +DRD A+ Sbjct: 16 HVPVMRERMAELLRPGVEAAGSQAVLVDATLGAGGHSEYFLQTFPQARVIGVDRDEQALQ 75 Query: 73 CGQETMRDYKEQFSLFQATFSQLQ-----------DYVPDKGVDGVVFDLGVSSMQIDCG 121 + + +F A F +L D G+ G +FDLGVSSMQ+D Sbjct: 76 NASARLEPFSPRFCAVNARFDELGTAIAQGEGDIFDAARAHGIAGALFDLGVSSMQLDQA 135 Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGF+++ PLDMRM S G++A+DV+N + DL RIL G+E+ A +IA A++K R Sbjct: 136 ERGFAYKTDAPLDMRMDPSHGLTAADVLNTYSHGDLARILKTYGDERFAGKIASAVLKER 195 Query: 181 QSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 + PF T+ L L+ T+ + + HPA R+FQALR+ VN E+E + L AL Sbjct: 196 EKEPFSTSGRLVELLYSTIPAATRRTGGHPAKRTFQALRVEVNRELEAIENVLPVITSAL 255 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 G + +S+ SLEDRLVK F S + F ++T+ + + Sbjct: 256 SIGARAVFMSYQSLEDRLVKAAFKDLSTSTTPAGLPMDLPGTAPEFATVTRGAEKASAAE 315 Query: 300 VAFNRRSRSAKLRAGMR 316 V N R+ S ++RA R Sbjct: 316 VEENSRAASVRVRALER 332 >gi|300933362|ref|ZP_07148618.1| S-adenosyl-methyltransferase MraW [Corynebacterium resistens DSM 45100] Length = 348 Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats. Identities = 108/334 (32%), Positives = 177/334 (52%), Gaps = 24/334 (7%) Query: 11 SAIHHTIGDHVPVLLEKVIALLNP------APG-KVILDATFGAGGYSRSFCKMGSN--V 61 A + HVPV+ ++++ L+ AP VI+D T GAGG+S +F S+ V Sbjct: 8 DATENATHGHVPVMCDRMVELVGVGVTSDNAPSVPVIIDGTLGAGGHSEAFLSSFSDAIV 67 Query: 62 IALDRDPFAVSCGQETMRDYKEQFSLFQATFS-------------QLQDYVPDKGVDGVV 108 I LDRDP A+ E + + ++F ++ F ++ V + G+ + Sbjct: 68 IGLDRDPHALEEATERLAPFGDRFVPYRTRFDGITEAIEDLIALDRIPAEVRETGLSALF 127 Query: 109 FDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEK 167 FDLGVSSMQ+D +RGF+++ PLDMRM ++A++++N + DL RIL G+E+ Sbjct: 128 FDLGVSSMQLDQAERGFAYRVDAPLDMRMDPRLSLTAAEILNTYSHGDLARILKTYGDER 187 Query: 168 QASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIE 226 A +IA A+++ R+ PF T+ L L+ T+ + + HPA R+FQALRI VN E+E Sbjct: 188 FAGKIASAVLREREKEPFTTSARLVELLYATIPAATRRTGGHPAKRTFQALRIEVNAELE 247 Query: 227 ELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ 286 L L A GG+ + +S+ SLED++VK F+ + + F+ Sbjct: 248 ALENVLPLAASWTHVGGVNVYMSYQSLEDKIVKSAFSDLTTSQTPAGLPMELPGTEPEFE 307 Query: 287 SITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVER 320 IT++ T++++ N R+ ++RA R +R Sbjct: 308 MITRRAEKATEKEIEENSRAAPVRVRAARRVSDR 341 >gi|326382552|ref|ZP_08204243.1| S-adenosyl-methyltransferase MraW [Gordonia neofelifaecis NRRL B-59395] gi|326198671|gb|EGD55854.1| S-adenosyl-methyltransferase MraW [Gordonia neofelifaecis NRRL B-59395] Length = 339 Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats. Identities = 114/325 (35%), Positives = 173/325 (53%), Gaps = 16/325 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKM--G 58 M+S G HVPV+ +++ ALL PA G V++D T GAGG++ F G Sbjct: 1 MNSPQQGDHG-HVPVMADRMFALLEPALTRVSADGTGAVLVDGTLGAGGHTEYFLDRLDG 59 Query: 59 SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSS 115 VIA+DRD A+ E + + ++ + +++D V G VDGV+ DLGVSS Sbjct: 60 LYVIAIDRDTSAIGIASERLGRFGDRVEFHHNRYDEIEDVVHAAGRTVVDGVLLDLGVSS 119 Query: 116 MQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAH 174 MQ+D +RGF++ PLDMRM+ ++A+D++N + L R+L GEE+ A +IA Sbjct: 120 MQLDRAERGFAYAVDAPLDMRMNADDELTAADILNTYDHGALARVLSEYGEERFAGKIAS 179 Query: 175 AIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLR 233 A+V+ R PF T+ L L+ T+ + + HPA R+FQALRI VN+E++ L + Sbjct: 180 AVVRERAKEPFTTSGRLVELLYATIPAATRRTGGHPAKRTFQALRIEVNHELDSLRGVIP 239 Query: 234 SAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV 293 ++ + L GG L V+S+ SLEDR+VK+ FA + F +T+ Sbjct: 240 ASLEVLGIGGRLAVMSYQSLEDRIVKRDFARAVENTTPAGLPVDLPGTAPEFSLVTRGAE 299 Query: 294 VPTQEDVAFNRRSRSAKLRAGMRTV 318 + A N RS ++RA R Sbjct: 300 QADAAERAANPRSAPVRIRAIERIA 324 >gi|315586621|gb|ADU41002.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori 35A] Length = 308 Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats. Identities = 110/311 (35%), Positives = 173/311 (55%), Gaps = 14/311 (4%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFA 70 + H +LL++V+ P V++D T G GG+S++ ++ I +D+D FA Sbjct: 1 MQEIENLHQSILLQEVLQAFAPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFA 60 Query: 71 VSCGQETMRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSF 127 +E ++ ++ +++L F++ ++ + + GV+ DLGVSS+Q+D +RGF+F Sbjct: 61 QEIAKERLKAFEGRYNLLSGGFAKRFKEALETHDKEIKGVLVDLGVSSLQLDDDNRGFNF 120 Query: 128 QKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 S LDMRM G ++A V+N + L +I GE K+ +IAH I +RR PF+ Sbjct: 121 -HSHALDMRMDLEGDLNAQKVINSYPMVALEKIFKDYGEIKEYKKIAHKIAERRTKKPFK 179 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 +DLS + SKN +IHPAT FQA+RI VN E+EEL + L+ A G +L Sbjct: 180 DAKDLSDFLSS---LSKNKKIHPATLVFQAVRIEVNRELEELKEFLQCARNL--KGAILC 234 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 V+SFHSLED LVK F + + + + A+ + +TKK + P+ E++ NR Sbjct: 235 VISFHSLEDSLVKNAFKDYAKNCICDPLSFKCACSNNHALGEILTKKPITPSPEEIKNNR 294 Query: 305 RSRSAKLRAGM 315 RSRSAK+R Sbjct: 295 RSRSAKMRVFQ 305 >gi|297626718|ref|YP_003688481.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922483|emb|CBL57056.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 342 Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats. Identities = 110/320 (34%), Positives = 167/320 (52%), Gaps = 11/320 (3%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIAL 64 + HVPV+ +V+ LL+PA PG V +D T G G++ ++ + Sbjct: 4 EATGPDPSTIHVPVMAARVVELLSPALDHPGAVYVDGTLGMAGHAELMLTANPQARLVGI 63 Query: 65 DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCG 121 DRD A+ + + + L +A F +L + D G+ D +FDLG+SS+QID Sbjct: 64 DRDHDALDLASRRLAPFGARVHLARARFDELGRVLDDAGIATIDAALFDLGLSSLQIDRA 123 Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 DRGF+++ PLDMRM S ++A+ V+N+ + DL R+L GEEKQA+RI AIV R Sbjct: 124 DRGFAYRVDAPLDMRMDTRSELTAARVLNEYSPGDLVRVLRDYGEEKQATRIVRAIVAER 183 Query: 181 QSAPFQTTQDLSSLIQKTVYFSKNNRIH--PATRSFQALRIFVNNEIEELAQGLRSAEKA 238 + PF + L LI + + + + PA R+FQALRI VN E+E L+ L Sbjct: 184 EREPFTDSARLVDLILRAIPAAVRTKTKGNPAKRTFQALRIEVNGELEALSTVLPVMLGR 243 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 + V+++HSLEDR+VK+ F + + + + A F +T+ P Sbjct: 244 MGPAARAAVLAYHSLEDRIVKQVFTAATSDSAPAGLPVVPDEMAARFAPLTRGAEKPDAA 303 Query: 299 DVAFNRRSRSAKLRAGMRTV 318 ++A N RS SA+LRA R Sbjct: 304 EIAENPRSASARLRAIERIR 323 >gi|195055510|ref|XP_001994660.1| GH14890 [Drosophila grimshawi] gi|193892423|gb|EDV91289.1| GH14890 [Drosophila grimshawi] Length = 368 Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats. Identities = 124/332 (37%), Positives = 175/332 (52%), Gaps = 31/332 (9%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCG 74 HVPVL + I L P P +D TFGAGG++R V ALDRDP A Sbjct: 36 AAPHVPVLCQTAIEYLEPRPKGKYIDMTFGAGGHTRRLLDSCPEATVYALDRDPIAYELA 95 Query: 75 QETMRD--YKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSF 127 Q ++ Y + FS L + D+ V DG++FD G SSMQ D RGFS Sbjct: 96 QRLSQESAYAGRLVPLLGKFSDLPQLLTDRNVPRHSFDGILFDFGCSSMQFDEAARGFSI 155 Query: 128 QKSGPLDMRMSCS---GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR-QSA 183 +GPLDMRM C G+SA+DV+ + DL RIL + GEEK A +IA AIV+ R Sbjct: 156 AHNGPLDMRMDCGRSGGVSAADVLARIEEADLARILRVYGEEKAAKKIARAIVEARGALQ 215 Query: 184 PFQTTQDLSSLIQKTVYFSKNNRI-----HPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 +TT+ L+ L+ + + H AT++FQALRIFVNNE+ E+ G+ A++ Sbjct: 216 RIETTRQLAELVASVLGDGQRQDKLQRPAHLATKTFQALRIFVNNELNEINYGMLLAQEY 275 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-------------PAVF 285 L+A G L+ ++FHSLED +VK+ + +A + H + + Sbjct: 276 LRAQGRLVAITFHSLEDTIVKRHINGNVIEGVANPLPLKYCGHDITHDPALLESFVQSNW 335 Query: 286 QSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 Q + + V++P ++A N RSRSAKLRA ++ Sbjct: 336 QQLHRHVILPDATEIASNSRSRSAKLRAAIKI 367 >gi|254456040|ref|ZP_05069469.1| S-adenosyl-methyltransferase MraW [Candidatus Pelagibacter sp. HTCC7211] gi|207083042|gb|EDZ60468.1| S-adenosyl-methyltransferase MraW [Candidatus Pelagibacter sp. HTCC7211] Length = 336 Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats. Identities = 119/310 (38%), Positives = 180/310 (58%), Gaps = 4/310 (1%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRD 67 M + I + H PVLL+++I++ +P G +D TFG GGYS+ +++IALDRD Sbjct: 1 MEATIVSELQKHYPVLLKEIISVFSPQHGGTFIDCTFGQGGYSKKILDFENTSIIALDRD 60 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDY-VPDKGVDGVVFDLGVSSMQIDCGDRGFS 126 + + +++++F FSQL + + ++ + GV+FDLG S QI +G S Sbjct: 61 VESEKIANKFKENFEDRFIFKNIKFSQLNNLKLKNENIRGVIFDLGYSYTQIKDPLKGLS 120 Query: 127 FQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 F+ G L+M++ + SA D +N+ + K+L +I G+EK+ IA I+K R Sbjct: 121 FEADGKLNMQLGLNSYSAEDAINKLDEKELEKIFKFFGDEKEGKYIARNIIKERLKNKID 180 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T+ L +I K+ KN ++H AT+ FQALRIFVN EI EL GL +A K LK GG+L Sbjct: 181 -TRALVEIIDKS-KKRKNFKVHNATKVFQALRIFVNKEISELIYGLINATKVLKKGGILG 238 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 VV+FHSLED++VK FF S S R+ + +F I KK ++P+ E+V+ N S Sbjct: 239 VVTFHSLEDKIVKYFFKSLSENKSISRYSPVTEQSETLFNLIQKKPILPSDEEVSENPPS 298 Query: 307 RSAKLRAGMR 316 RSAK R ++ Sbjct: 299 RSAKFRYVIK 308 >gi|54114491|gb|AAV29879.1| NT02FT1003 [synthetic construct] Length = 305 Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats. Identities = 116/309 (37%), Positives = 175/309 (56%), Gaps = 16/309 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76 H VLL + I LN P + + ATFG GG+S++ +IA D+D A+S +E Sbjct: 1 MHYSVLLPESINDLNINPQGIYIHATFGRGGHSKAILNRLTTGRLIAFDKDLDAISYARE 60 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + F + A+F+ + DY +DG++ DLGVSS Q+D RGFSF +GP Sbjct: 61 NFQF--SNFEIVHASFASIYDYCLQHSLLGKIDGIIMDLGVSSPQLDNAARGFSFTHNGP 118 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTTQD 190 LDMRM S GI+AS + + +V DL+ I + GEE+ A +IA I +Q+ + T + Sbjct: 119 LDMRMDVSKGITASQALEELSVDDLSYIFKVYGEERFAKKIALRIKDYIQQNGSIRKTLE 178 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ LI T+ K + +PATR FQALRI+VNNE+++L L + +K+GG + +SF Sbjct: 179 LAELILATI--GKKEKKNPATRCFQALRIYVNNELKDLEALLENILAVIKSGGRIAAISF 236 Query: 251 HSLEDRLVKKFFASRSGKVMAVRH---MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 HSLEDR+VK+ F++ + M+P ++ + ITKK ++++ N RSR Sbjct: 237 HSLEDRIVKQKFSALINPKQELNRITKMLPQDSSQIKLKWITKKS-KANEDELNQNVRSR 295 Query: 308 SAKLRAGMR 316 SA LR + Sbjct: 296 SAILRVVEK 304 >gi|308184491|ref|YP_003928624.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori SJM180] gi|308060411|gb|ADO02307.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori SJM180] Length = 308 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 112/311 (36%), Positives = 174/311 (55%), Gaps = 14/311 (4%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70 + H VLL++V+ P V++D T G GG+S++ + +I +D+D FA Sbjct: 1 MQEIENLHQSVLLQEVLQAFAPLEKGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFA 60 Query: 71 VSCGQETMRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSF 127 +E +++++ +++L F++ ++ + G + GV+ DLGVSS+Q+D +RGF+F Sbjct: 61 QEIAKERLKEFEGRYNLLSGGFAKRFKEALEIHGERIKGVLVDLGVSSLQLDDDNRGFNF 120 Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 S LDMRM S ++A V+N V L +I GE K+ +IAH I +R PF+ Sbjct: 121 -HSHALDMRMDLESELNAQKVINSYPVVALEKIFRDYGEIKEYKKIAHKIAERCAKKPFK 179 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 +DLS + SKN +IHPAT FQA+RI VN+E+EEL + L+ A G +L Sbjct: 180 DAKDLSEFLSS---LSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCARNL--KGAILC 234 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 V+SFHSLED LVK F + + + + A+ +TKK + P+ E++ NR Sbjct: 235 VISFHSLEDALVKNAFKDYAKNCICDPSSFKCACSNNHALGAILTKKPITPSPEEIKNNR 294 Query: 305 RSRSAKLRAGM 315 RSRSAK+R Sbjct: 295 RSRSAKMRVFQ 305 >gi|78776996|ref|YP_393311.1| S-adenosyl-methyltransferase MraW [Sulfurimonas denitrificans DSM 1251] gi|123550493|sp|Q30SF5|RSMH_SULDN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|78497536|gb|ABB44076.1| methyltransferase [Sulfurimonas denitrificans DSM 1251] Length = 307 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 96/306 (31%), Positives = 161/306 (52%), Gaps = 15/306 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76 HVPVL +V+ +++D T G GG++ N +IA+D+D A+ + Sbjct: 5 PHVPVLYREVLEQFKNIKNGIVIDCTMGYGGHTSLILDANPNIKLIAIDQDQSAIDFSTK 64 Query: 77 TMRDYKEQFSLFQATFS-QLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + Y ++ + + FS +++ + + + G++ D+GVSS+Q+D +RGFSF S Sbjct: 65 RLEPYGDRVVIKKGRFSTIIKEILKEYDISDIRGILADIGVSSLQLDKKERGFSF-FSEN 123 Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM ++A+ V+N+ + +L R+L GE + +IA IV R PF + ++L Sbjct: 124 LDMRMDEDAPLNANIVINEYSSHELQRVLLEYGELRNYKQIASFIVSNR---PFYSAKEL 180 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 S ++ + K +IHPAT QA+RI VNNE+ EL L + ++ + ++SFH Sbjct: 181 SDALRHLMPSGK--KIHPATLLMQAIRIEVNNELGELESLLDTIQERKFLDTKVAIISFH 238 Query: 252 SLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 SLEDR+VK F + + ++ +TKK ++ +++ N RSRSA Sbjct: 239 SLEDRIVKNRFNEWRASCICPQEAMRCTCTNDNSLGNILTKKPIIAQMDEIQANPRSRSA 298 Query: 310 KLRAGM 315 KLR Sbjct: 299 KLRVFE 304 >gi|71891921|ref|YP_277651.1| S-adenosyl-dependent methyl transferase [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|88909187|sp|Q493Q9|RSMH_BLOPB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|71796027|gb|AAZ40778.1| S-adenosyl-dependent methyl transferase [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 329 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 111/321 (34%), Positives = 183/321 (57%), Gaps = 19/321 (5%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69 + + H VLL + I LN + +D TFG+GG+S+ ++A+D+D Sbjct: 12 MFYIHYSHKSVLLNEAIQSLNIKATGMYIDGTFGSGGHSKLILSQLNKRGRLLAIDKDLL 71 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGF 125 AV G + + + ++F++ ++FS++ ++V + G VDG++ DLG+S+ QI+ RGF Sbjct: 72 AVKIG-KHIAEQDDRFTIIHSSFSKMINHVKNIGLIGSVDGILLDLGISTFQINDCSRGF 130 Query: 126 SFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF + G LDMRM SGISA++ +++A+ +++T +L GEE+ A IA +V +R+ P Sbjct: 131 SFMQDGLLDMRMDISSGISAAEWLSKASQENITWVLKNFGEERFAKNIAKILVSKRRYTP 190 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 + LS LI + +N HPAT+SF A+R+F+NNE+EE+ Q L+ A L G Sbjct: 191 IIRSIVLSKLICDAIP-HRNMNKHPATKSFLAIRMFINNELEEIMQVLKDALIILSPRGR 249 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-------PAVFQSITKKVVVPTQ 297 L+V+SF+SLEDRLVK F S + + +N ++I K + P++ Sbjct: 250 LVVISFNSLEDRLVKYFIREHSCALSIPPKLPLTNNQIFSKYKNKCQLKNIGK--LTPSK 307 Query: 298 EDVAFNRRSRSAKLRAGMRTV 318 +++ N R+RSA LR + Sbjct: 308 QEIKRNIRARSAILRCAEKLA 328 >gi|33519608|ref|NP_878440.1| S-adenosyl-methyltransferase MraW [Candidatus Blochmannia floridanus] gi|42559456|sp|Q7VQJ5|RSMH_BLOFL RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|33517271|emb|CAD83655.1| S-adenosyl methionine adenyltransferase; probably methyltransferase [Candidatus Blochmannia floridanus] Length = 321 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 121/321 (37%), Positives = 176/321 (54%), Gaps = 23/321 (7%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73 I H VLL + I LN P + +D TFG GG+S +IA+DRD AV+ Sbjct: 3 IMHHNSVLLHEAINALNINPSGIYIDGTFGLGGHSHYILSKLTSHGRLIAMDRDWSAVNI 62 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQK 129 G E + +FS+ A FS++ + + ++G++ DLGV Q+ RGFSF + Sbjct: 63 G-EVLTKQDGRFSIIHAPFSKMLRCIYNMNLVGLINGILLDLGVCESQLTDSSRGFSFMR 121 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM S G SA + + +A+ KD+ +L GEEK + +IA +IV +R+ P T Sbjct: 122 DGPLDMRMDNSVGQSAYEWIAKASQKDIEWVLRTFGEEKLSKKIARSIVLKREVYPIDRT 181 Query: 189 QDLSSLIQKTVYF---SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 LS +I TV + N R HPATRSF A+RI++N E+ E+ + L+ K L GG L Sbjct: 182 SALSEIISDTVLYYNNRYNRRKHPATRSFLAIRIYINEELVEIMKILQDVFKLLAPGGRL 241 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV--------FQSITKKVVVPTQ 297 +V+SF+SLEDR+VKKF S +V A IP + F+++ K + PT Sbjct: 242 VVISFNSLEDRIVKKFINQYS-RVFAYPPKIPLTHTQLLHKYSGTMKFKNLGK--IKPTV 298 Query: 298 EDVAFNRRSRSAKLRAGMRTV 318 ++ N R+RSA LR + + Sbjct: 299 LEIKKNIRARSAILRYAEKLI 319 >gi|217967641|ref|YP_002353147.1| S-adenosyl-methyltransferase MraW [Dictyoglomus turgidum DSM 6724] gi|263446377|sp|B8E088|RSMH_DICTD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|217336740|gb|ACK42533.1| S-adenosyl-methyltransferase MraW [Dictyoglomus turgidum DSM 6724] Length = 295 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 108/305 (35%), Positives = 173/305 (56%), Gaps = 27/305 (8%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H PV+L++VI L +PGK+++DAT G GG+S + +I +DRD ++ +E Sbjct: 8 HKPVMLKEVIHYLKLSPGKIVVDATLGLGGHSSEILRELKGEGLLIGIDRDEEVLNLARE 67 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK-SGP 132 +R F LF T+ ++Q+ + + +D ++FDLG SS I+ +RGFSF + P Sbjct: 68 RLRKIANNFVLFNTTYDKVQEILKELKLSFIDAILFDLGFSSFHIEKSERGFSFMRPEEP 127 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMR S + ++A+D++N N +L+ + GEE + ++A IV+RR+ F +DL Sbjct: 128 LDMRYSKDTTLTAADILNSFNELELSNLFWEYGEEPLSRKLAKKIVERRKEKKFVYVKDL 187 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++++ + K H AT+ FQALRI VN+E+ L + L L G ++V+++H Sbjct: 188 LEVVEEVIPKRKR---HEATKVFQALRIVVNDEVNILKRALDQIPFILAPRGRIVVLTYH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 S+EDR+VK FF S S K+ + KKV+ P+ ++ NRR+RSAKL Sbjct: 245 SIEDRVVKNFFKSHSDKIFP----------------VNKKVIRPSVNEIRENRRARSAKL 288 Query: 312 RAGMR 316 R G R Sbjct: 289 RVGER 293 >gi|296454440|ref|YP_003661583.1| S-adenosyl-methyltransferase MraW [Bifidobacterium longum subsp. longum JDM301] gi|296183871|gb|ADH00753.1| S-adenosyl-methyltransferase MraW [Bifidobacterium longum subsp. longum JDM301] Length = 359 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 114/307 (37%), Positives = 160/307 (52%), Gaps = 11/307 (3%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 H+PVLL+ + L+ PA + D T G G+S +F K +I +DRD A+ Sbjct: 8 HLPVLLDDCVNLMVPALEHENAIAADCTLGLAGHSIAFLKAAPQARLIGIDRDSEALGLA 67 Query: 75 QETMRDYK--EQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK 129 E M ++F A F QL + D+G VD V DLG+SS+QID DRGFS+ Sbjct: 68 TERMEREGLADRFIPVHAAFDQLDQVLTDRGIERVDAVFMDLGLSSLQIDETDRGFSYSH 127 Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM S ++A ++ + +L RI GEE+ + +IA AIV RR PF TT Sbjct: 128 DAPLDMRMDVSQPLTAERILATYDAAELVRIFKEYGEERFSRQIARAIVARRDKEPFTTT 187 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ L+ + V + +PA R FQALRI VN E+++LA L A L GG L+V Sbjct: 188 AQLNRLVDEVVPQAHRPAGNPAKRVFQALRIEVNGELDKLASTLPQAANRLHVGGRLVVE 247 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 S+HSLED+ VK F A + + F +T+ + + ++A N RS S Sbjct: 248 SYHSLEDKTVKSFMAQGLRVDVPAGLPVIPPDAQPFFTDLTRGAIKAGEHEIAANPRSAS 307 Query: 309 AKLRAGM 315 +LRA Sbjct: 308 VRLRAVE 314 >gi|183983192|ref|YP_001851483.1| methyltransferase [Mycobacterium marinum M] gi|262825131|sp|B2HGS5|RSMH_MYCMM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|183176518|gb|ACC41628.1| methyltransferase [Mycobacterium marinum M] Length = 345 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 115/316 (36%), Positives = 173/316 (54%), Gaps = 18/316 (5%) Query: 19 DHVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDP 68 HVPVL ++ + LL PA V++DAT GAGG++ F +I LDRDP Sbjct: 14 HHVPVLAQRCVELLRPALTRHHADGSEAVLVDATIGAGGHAERFLTELPGLRLIGLDRDP 73 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSSMQIDCGD 122 A+ + + + ++ +L + L + + G +DG +FDLGVSSMQ+D + Sbjct: 74 SALEIVRTRLARFADRVTLVHTRYDGLASALTELGYGAAQSIDGALFDLGVSSMQLDQAE 133 Query: 123 RGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGF++ K PLDMRM+ S +SA+D++N + L IL GEE+ A RIA I++RR Sbjct: 134 RGFAYSKDAPLDMRMNPQSALSAADIINTYDEAALADILHRYGEERFARRIAARIIRRRA 193 Query: 182 SAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 PF TT +L +L+ + + + + HPA R+FQALRI VN+E+ L + +A AL Sbjct: 194 DKPFTTTAELVALLYEAIPAAARRTGGHPAKRTFQALRIAVNDELGSLRSAIPAAMDALA 253 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300 GG ++V+++ SLEDR+VK+ FA + + H F+S+T +V Sbjct: 254 VGGRIVVMAYQSLEDRIVKRVFADAVASRTPMDLPVELPGHGPRFRSLTHGAERADAAEV 313 Query: 301 AFNRRSRSAKLRAGMR 316 N RS +LRA R Sbjct: 314 ERNPRSAPVRLRALER 329 >gi|302338060|ref|YP_003803266.1| S-adenosyl-methyltransferase MraW [Spirochaeta smaragdinae DSM 11293] gi|301635245|gb|ADK80672.1| S-adenosyl-methyltransferase MraW [Spirochaeta smaragdinae DSM 11293] Length = 320 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 117/309 (37%), Positives = 174/309 (56%), Gaps = 8/309 (2%) Query: 20 HVPVLLEKVIALLNPA-PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76 H V+ E+ L+PA +++D T G GG+S F G ++ LD D + ++ Sbjct: 10 HRSVMAEEAFHYLSPALEKGLLVDCTLGEGGHSELFLSRLPGCRIVGLDADEKILEVARQ 69 Query: 77 TMRDYKEQFSLFQATFS-QLQDY-VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + + E+ LF F+ +DY + D+ D V+FDLG+S + RGFSF++ PLD Sbjct: 70 RLAPFGERVRLFNTWFNVFFRDYPLGDERPDAVLFDLGISVFHYERSGRGFSFREDEPLD 129 Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MR+ SA+D++N K+L ++ GEE+ + R A AIV RRQS PF TT++L Sbjct: 130 MRLEAHLEQSAADIINTYPEKELADLIFRFGEERLSRRFASAIVARRQSKPFTTTKELEE 189 Query: 194 LIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I S ++ RIHPATR+FQALRI VN E+ L L A L+ GG++ V+SFHS Sbjct: 190 VIWTASPQSYRHGRIHPATRTFQALRIAVNGELARLESALGDAFARLRPGGMMGVISFHS 249 Query: 253 LEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 LEDR+VK FF + ++ I S+ + +TKK + PT+E+V N SRSAK Sbjct: 250 LEDRIVKHFFLDKKKGCISSSGAPIDSDRGVTAAEILTKKPLRPTEEEVRVNAPSRSAKF 309 Query: 312 RAGMRTVER 320 R + ++ Sbjct: 310 RVVRKLIDE 318 >gi|315638233|ref|ZP_07893415.1| S-adenosyl-methyltransferase MraW [Campylobacter upsaliensis JV21] gi|315481769|gb|EFU72391.1| S-adenosyl-methyltransferase MraW [Campylobacter upsaliensis JV21] Length = 304 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 102/301 (33%), Positives = 165/301 (54%), Gaps = 8/301 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQE 76 H+PVL ++V L + LD T G GG+S + KM ++IA D+D A+ +E Sbjct: 4 PHIPVLPKEVNHLFEKLNEGLFLDCTLGYGGHSENLLKMHPNLHLIACDQDEEALQFSKE 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 ++++ + L+ + FSQ+ + + K + G++ D+GVSS+ +D +RGFS + + LDMR Sbjct: 64 RLKEFDARIRLYHSNFSQILEQIDLKNLRGILADIGVSSLHLDKDERGFSLRSN-FLDMR 122 Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M S +SA DV+N + + L I I GE K + +A I+K R + ++L ++ Sbjct: 123 MDKSQSLSAFDVINTYSKEKLADIFKIYGELKDGAFLAEKIIKARAKKQIISAKELCEIL 182 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 T KN +I A +FQALRI VN E+E L L+ EKA +L ++ FHSLED Sbjct: 183 GNT--RLKNRKISQAILAFQALRIEVNKELEVLELFLQKLEKAHLRDCILAIICFHSLED 240 Query: 256 RLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 R+VK +F + + A+ + + ++KK + P +E++ N RS AK+RA Sbjct: 241 RIVKNYFKKWAKACICDERAIRCECGANHNLGEILSKKPITPDKEEIKANPRSSCAKMRA 300 Query: 314 G 314 Sbjct: 301 F 301 >gi|163854995|ref|YP_001629293.1| S-adenosyl-methyltransferase MraW [Bordetella petrii DSM 12804] gi|263445873|sp|A9I4S5|RSMH_BORPD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|163258723|emb|CAP41022.1| methyltransferase [Bordetella petrii] Length = 363 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 118/344 (34%), Positives = 185/344 (53%), Gaps = 35/344 (10%) Query: 19 DHVPVLLEKVIALL----------------------NPAPGKVILDATFGAGGYSRSFCK 56 +H PVLL + L A V +D TFG GG+SR + Sbjct: 4 EHRPVLLAPTVDALLLADFAGKGAARSGRQDGAQADARAQRGVFVDGTFGRGGHSRELLR 63 Query: 57 MGS---NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFD 110 ++ D+DP A++ E + + ++ F+ +++ + +G+ DGV+ D Sbjct: 64 RLGPEARLVVFDKDPQAIAVANE-LAAGDARVTVVHGGFAAMREELAARGIESIDGVMLD 122 Query: 111 LGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQA 169 LGVSS Q+D RGFSF + GPLDMRM + G + +D + QA+V ++ ++ GEE+ A Sbjct: 123 LGVSSPQLDDAGRGFSFMREGPLDMRMDTTRGPTVADWLAQASVDEMREVIADYGEERFA 182 Query: 170 SRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELA 229 ++A AI RR + P +TT +L+ + V ++ HPATR+FQALRI++N E+EEL+ Sbjct: 183 FQVAKAIAARRATRPLRTTLELAECVASAV-RTREKGQHPATRTFQALRIYINRELEELS 241 Query: 230 QGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQS 287 + L SA + L GG L V+SFHSLEDR+VK+ A+ + +A + S +++S Sbjct: 242 RALASALELLAPGGRLAVISFHSLEDRMVKQCIAAAARPAVAHARLPLRESELPQPLYRS 301 Query: 288 ITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDDSFVHLP 331 + + V E++A N R+RSA LR RT E D + +P Sbjct: 302 LGR--VQADDEEIAGNARARSAVLRVAERTTEPLGADGAAAFVP 343 >gi|218562332|ref|YP_002344111.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|20139252|sp|Q9PPL4|RSMH_CAMJE RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|112360038|emb|CAL34830.1| S-adenosyl-methyltransferase [Campylobacter jejuni subsp. jejuni NCTC 11168] Length = 312 Score = 316 bits (811), Expect = 2e-84, Method: Composition-based stats. Identities = 100/302 (33%), Positives = 159/302 (52%), Gaps = 9/302 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76 H+PVLL +V + LD T G GG+S + K ++ IA D+D A+ ++ Sbjct: 6 PHIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKNHPDLKFIACDQDQQALKFSKK 65 Query: 77 TMRDYKEQFSLFQATFSQ-LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 ++D++ + + Q+ FS+ L+ + + G++ D+GVSS Q+D +RGFS LDM Sbjct: 66 RLKDFRNRITFMQSNFSEVLEKISHKEELRGILADIGVSSFQLDNNERGFSVNSD-FLDM 124 Query: 136 RMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM+ S ISA +++N + LT I GE A IA I R ++ ++L + Sbjct: 125 RMNQNSKISAYEIINTYTKEQLTSIFKDYGELHDAHFIAEKICLERSKNLIKSAKELYQI 184 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 I K + +I AT +FQA+RI VN E++ L L E +L ++SFHSLE Sbjct: 185 IGK--GKQNHRKISKATLAFQAIRIEVNQELKVLKDFLEHLENLKPKNCILAIISFHSLE 242 Query: 255 DRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 DR+VK+FF S + + + ++ Q ITKK + ++E++ N RS AK+R Sbjct: 243 DRIVKQFFKKWSKNCICNEKIMRCECGNNHSLGQIITKKAISASKEELLKNSRSSCAKMR 302 Query: 313 AG 314 A Sbjct: 303 AF 304 >gi|296117529|ref|ZP_06836113.1| S-adenosyl-methyltransferase MraW [Corynebacterium ammoniagenes DSM 20306] gi|295969260|gb|EFG82501.1| S-adenosyl-methyltransferase MraW [Corynebacterium ammoniagenes DSM 20306] Length = 363 Score = 316 bits (811), Expect = 2e-84, Method: Composition-based stats. Identities = 109/319 (34%), Positives = 172/319 (53%), Gaps = 20/319 (6%) Query: 20 HVPVLLEKVIALLNPA-----PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVS 72 HVPV+ ++ L+ PA +I+D T GAGG++ F + VI +DRD +++ Sbjct: 31 HVPVMRARMAELIAPAVEAAGENAIIIDGTLGAGGHTEYFLQNFPQARVIGVDRDAASLA 90 Query: 73 CGQETMRDYKEQFSLFQATFSQLQ-----------DYVPDKGVDGVVFDLGVSSMQIDCG 121 E + + ++F F ++ + GV G +FDLGVSSMQ+D Sbjct: 91 EAGERLSPFADRFVGVNERFDEIGSAIAEGDGEVFEIARQHGVAGALFDLGVSSMQLDQA 150 Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 DRGF+++ PLDMRM S GI+A+DV+N + +L IL + G+E+ A +IA A++K R Sbjct: 151 DRGFAYKVDAPLDMRMDPSAGITAADVLNTYSHGELAHILKMYGDERFAGKIASAVLKER 210 Query: 181 QSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 PF T+ L L+ T+ + + HPA R+FQALR+ VN E+E + Q + AL Sbjct: 211 DKQPFDTSARLVELLYNTIPAATRRTGGHPAKRTFQALRVEVNGELEAIEQVIPVITSAL 270 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 GG ++ +S+ SLED+LVK F + + + A F++IT+ T+ + Sbjct: 271 NIGGRVVFMSYQSLEDKLVKSTFKTLTTSSTPAGLPMDLPGTAAHFKTITRGSEKATEAE 330 Query: 300 VAFNRRSRSAKLRAGMRTV 318 +A N R+ S ++RA R Sbjct: 331 IAENPRAASVRVRAFERLA 349 >gi|315604430|ref|ZP_07879496.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Actinomyces sp. oral taxon 180 str. F0310] gi|315314136|gb|EFU62187.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Actinomyces sp. oral taxon 180 str. F0310] Length = 341 Score = 316 bits (811), Expect = 3e-84, Method: Composition-based stats. Identities = 108/319 (33%), Positives = 174/319 (54%), Gaps = 12/319 (3%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSNV--IA 63 ++ A HVPVLL + + +L PA PG V++DAT G GG++ + ++ I Sbjct: 14 LADASRPARERHVPVLLSECLDMLAPAIGAPGAVLVDATLGMGGHTEGALERFEDLTVIG 73 Query: 64 LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQI 118 +DRDP A++ + + + +F AT+ + + ++ VDG++ DLGVSS+Q+ Sbjct: 74 IDRDPQAIALASDRLERFGARFRAVHATYDHIDRVIEEQCGPGSRVDGILMDLGVSSLQL 133 Query: 119 DCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177 D DRGF++ K PLDMRM + G SA+D++ A+ ++ RIL GEE+ A RIA I+ Sbjct: 134 DEADRGFAYSKDAPLDMRMDPTTGPSAADLLASASEGEIVRILRTYGEERFAPRIARLII 193 Query: 178 KRRQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236 +RR AP T +L +++ + ++ + +PA R+FQALR+ VN+E+ L + L A Sbjct: 194 RRRDEAPITRTGELVDIVRSAIPAPARRSGGNPAKRTFQALRVAVNDELTILERALPRAL 253 Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296 +L+ GG L+V ++ SLEDR+VK + I + + +TK Sbjct: 254 ASLRVGGRLVVEAYQSLEDRIVKDVLRRGATSAAPPGLPIVPDEMAPSLRLLTKGANRAD 313 Query: 297 QEDVAFNRRSRSAKLRAGM 315 Q + N RS S +LR Sbjct: 314 QAEQDHNPRSASVRLRGAE 332 >gi|117928210|ref|YP_872761.1| S-adenosyl-methyltransferase MraW [Acidothermus cellulolyticus 11B] gi|263433362|sp|A0LTL5|RSMH_ACIC1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|117648673|gb|ABK52775.1| S-adenosyl-methyltransferase MraW [Acidothermus cellulolyticus 11B] Length = 329 Score = 316 bits (811), Expect = 3e-84, Method: Composition-based stats. Identities = 109/309 (35%), Positives = 176/309 (56%), Gaps = 13/309 (4%) Query: 9 MSSAIHHTIGD---HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--N 60 M++ ++ H PV++++V+ LL PA PG +++DAT G GG++ + + S Sbjct: 1 MTADPGSSVPPAVVHRPVMVDRVVELLLPALGYPGAIVVDATVGLGGHAEAVVRAASAAT 60 Query: 61 VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQ 117 +I LD DP A+ + + Y ++ L F +L + ++G+ ++FDLG+SS+ Sbjct: 61 LIGLDHDPHAIRLAAQRLAGYADRVQLVNVAFDRLAQVLSERGISAVAAILFDLGLSSLH 120 Query: 118 IDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 ID RGF++ + PLDMRM +A+DVVN + +L R+L + GEE+ A RIA AI Sbjct: 121 IDDPARGFAYSRDVPLDMRMDPRLPRTAADVVNTYSATELARVLRVYGEERFAVRIADAI 180 Query: 177 VKRRQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 V+RR P +T+DLS L+++ + ++ HPA R+FQALRI VN+E+ L + L A Sbjct: 181 VRRRARQPITSTRDLSELVREAIPAPARRTGGHPAKRTFQALRIEVNDELGRLERTLPVA 240 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295 AL+ GG ++V+S+HSLEDR VK+FF + + + +T+ P Sbjct: 241 IAALQPGGRIVVLSYHSLEDRTVKRFFQAAASDATPAGLPTALPTARPRLRLLTRGAERP 300 Query: 296 TQEDVAFNR 304 + +VA N Sbjct: 301 SPAEVAANP 309 >gi|57242049|ref|ZP_00369989.1| S-adenosyl-methyltransferase MraW [Campylobacter upsaliensis RM3195] gi|57017241|gb|EAL54022.1| S-adenosyl-methyltransferase MraW [Campylobacter upsaliensis RM3195] Length = 304 Score = 316 bits (811), Expect = 3e-84, Method: Composition-based stats. Identities = 103/301 (34%), Positives = 165/301 (54%), Gaps = 8/301 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQE 76 H+PVL ++V L + LD T G GG+S + KM ++IA D+D A+ +E Sbjct: 4 PHIPVLPKEVNHLFEKLNEGLFLDCTLGYGGHSENLLKMHPNLHLIACDQDEEALQFSKE 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 +R++ + L+ + FSQ+ + + K + G++ D+GVSS+ +D +RGFS + + LDMR Sbjct: 64 RLREFDARIRLYHSNFSQILEQIDLKNLRGILADIGVSSLHLDKDERGFSLRSN-FLDMR 122 Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M S +SA DV+N + + L I I GE K + +A I+K R + ++L ++ Sbjct: 123 MDKSQSLSAFDVINTYSKEKLANIFKIYGELKDGAFLAEKIIKARAKKQIISAKELCEIL 182 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 T KN +I A +FQALRI VN E+E L L+ EKA +L ++ FHSLED Sbjct: 183 SNT--RLKNRKISQAILAFQALRIEVNKELEVLELFLQKLEKAHLRDCILAIICFHSLED 240 Query: 256 RLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 R+VK +F + + A+ + + ++KK + P +E++ N RS AK+RA Sbjct: 241 RIVKNYFKKWAKACICDERAIRCECGANHNLGEILSKKPITPDKEEIKANPRSSCAKMRA 300 Query: 314 G 314 Sbjct: 301 F 301 >gi|315637346|ref|ZP_07892564.1| S-adenosyl-methyltransferase MraW [Arcobacter butzleri JV22] gi|315478389|gb|EFU69104.1| S-adenosyl-methyltransferase MraW [Arcobacter butzleri JV22] Length = 300 Score = 316 bits (811), Expect = 3e-84, Method: Composition-based stats. Identities = 97/301 (32%), Positives = 162/301 (53%), Gaps = 12/301 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76 H+PVL +V+ I+D T G G+S N +I D+D A++ ++ Sbjct: 4 PHIPVLYNEVLETFKDTNEGYIIDCTTGFAGHSSGLLNQNQNIKLICNDQDDEALAFSKK 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + ++ + + F + + D + GV+ D+GVSS+Q+D +RGF F+ LDMR Sbjct: 64 RVEKFENRVIFNKGNFEHVIETFKDYEIRGVLADIGVSSLQLDKLERGFGFES-LTLDMR 122 Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M+ + + A+ VVN + +L RI GE ++ ++A IV R PF ++++L+ + Sbjct: 123 MNQNQSLDAATVVNTYSQTELERIFKDYGEVREYKKVASLIVNNR---PFNSSKELADFL 179 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 K + ++HPAT FQA+RI VN+E+ L + S EKA ++ ++SFHSLED Sbjct: 180 SKKMS---KGKLHPATLPFQAIRIEVNDELGVLERLFDSLEKAKLKDCIVAIISFHSLED 236 Query: 256 RLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 R+VK +F S + ++ + A+ + ITKK ++PT ++ N RSRS+KLR Sbjct: 237 RIVKNYFKKWSKSCICPDNVFRCECGNNHALGKIITKKPIIPTALEIKQNPRSRSSKLRV 296 Query: 314 G 314 Sbjct: 297 F 297 >gi|168023286|ref|XP_001764169.1| predicted protein [Physcomitrella patens subsp. patens] gi|162684609|gb|EDQ71010.1| predicted protein [Physcomitrella patens subsp. patens] Length = 329 Score = 316 bits (811), Expect = 3e-84, Method: Composition-based stats. Identities = 109/329 (33%), Positives = 163/329 (49%), Gaps = 30/329 (9%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCG 74 HV VLL +V+A +D T GA G++ + + + I D DP A S Sbjct: 1 APHVAVLLNEVLAKFRDRRILSFVDCTLGAAGHASAILREHPELESFIGFDVDPVAHSEA 60 Query: 75 QETMRDYKE---QFSLFQATFSQLQDY-------VPDKGVDGVVFDLGVSSMQIDCGDRG 124 + ++ Q L F ++ + +GV+G++ DLG+SSMQ+D +RG Sbjct: 61 KPRLQAMASSDVQLHLVLTNFRNIKKAVNGADAKLVHEGVNGILMDLGMSSMQVDMAERG 120 Query: 125 FSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 FSF K GP DMRM S ++A +++N+ ++ RIL GEEK+ +A IV +R + Sbjct: 121 FSFMKDGPADMRMDPSASLTAEEILNKWPEAEVARILRDYGEEKRWKHLARKIVDKRLAG 180 Query: 184 PFQTTQDLSSLIQKTVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 +T +L +I + HPATR+FQALRI VN+E+ L L A L Sbjct: 181 GIHSTSELVKVIGGNTFGRPGKGKAVHPATRTFQALRIAVNDELRTLETALADAFDLLAP 240 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHP--------------AVFQS 287 G L V+SFHSLEDR+VK+FF +G AV + ++ Sbjct: 241 KGRLAVISFHSLEDRIVKRFFLKAAGIGQAVEDNEMGSEPQGDDFSLRDKNVLEGSIGVV 300 Query: 288 ITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 +TK+ +V +++ N RSRSAKLR + Sbjct: 301 LTKRPIVAEADEINTNPRSRSAKLRVIEK 329 >gi|312880226|ref|ZP_07740026.1| S-adenosyl-methyltransferase MraW [Aminomonas paucivorans DSM 12260] gi|310783517|gb|EFQ23915.1| S-adenosyl-methyltransferase MraW [Aminomonas paucivorans DSM 12260] Length = 324 Score = 316 bits (811), Expect = 3e-84, Method: Composition-based stats. Identities = 111/309 (35%), Positives = 167/309 (54%), Gaps = 27/309 (8%) Query: 20 HVPVLLEKVIALLNPAPGKV-ILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76 HVPV+L++V+ L P +V ++D T GA G++R+ ++ +D+DP A+ + Sbjct: 4 HVPVMLQEVLEALRPWEEQVCVVDGTLGAAGHARAILANCPRCRLVGIDQDPSALDEARL 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + Y ++ +L F L +P + +FDLGVSSMQID +RGFSF GPL Sbjct: 64 NLAPYGDRVTLIPGNFRDLSTLLPRYEIKVCSAFLFDLGVSSMQIDREERGFSFHGEGPL 123 Query: 134 DMRMSCS----GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQTT 188 DMRM G++A+D+VN + DL + GE+ A IA AIV R+ P TT Sbjct: 124 DMRMDSGTLSRGVTAADIVNSWELGDLIGLFRRYGEDPFAVPIARAIVMHRERYGPLMTT 183 Query: 189 QDLSSLIQKTVYFS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 + L +LI++T+ + HPA R FQALRI VN+E+E L + L S ++ Sbjct: 184 ESLVALIRRTLPAPAQRKAGTHPARRIFQALRIAVNDEMEALRETLESLPSFCGDPSTVV 243 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 +++HSLEDRLVK+ + + + +TKK +VP +E++ N+RS Sbjct: 244 FITYHSLEDRLVKQHMKTWAAEG--------------KGLLVTKKPLVPREEEIRENKRS 289 Query: 307 RSAKLRAGM 315 RSAKLR Sbjct: 290 RSAKLRVFR 298 >gi|154482529|ref|ZP_02024977.1| hypothetical protein EUBVEN_00196 [Eubacterium ventriosum ATCC 27560] gi|149736554|gb|EDM52440.1| hypothetical protein EUBVEN_00196 [Eubacterium ventriosum ATCC 27560] Length = 365 Score = 316 bits (810), Expect = 3e-84, Method: Composition-based stats. Identities = 103/326 (31%), Positives = 163/326 (50%), Gaps = 28/326 (8%) Query: 5 SCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNV 61 + + + S G H+ + +++++ L+ PG++ LDAT G GG++ K ++ Sbjct: 53 TIEKVISKGSTPAGMHISICVKEILEFLDIKPGQIGLDATLGYGGHTLQMLKKLDRKGHI 112 Query: 62 IALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQ 117 LD DP + + + D + + F + + G D ++ DLGVSSMQ Sbjct: 113 YGLDIDPIEIKKTTKRLADKGFGKDVLTTINTNFRNIDQVAKEHGPFDFILADLGVSSMQ 172 Query: 118 IDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 ID +RGF+++ GPLD+R++ GISA++ + +V +L + +E A IA AI Sbjct: 173 IDNPERGFTYKYEGPLDLRLNPEKGISAAERLRDISVDELEGMFIENSDEPYAYEIAKAI 232 Query: 177 VKR-RQSAPFQTTQDLSSLIQK---TVYFSKNNR--IHPATRSFQALRIFVNNEIEELAQ 230 V R R + +TT DL ++I+K V + R FQALRI VNNE E L Sbjct: 233 VARNRTNNKIETTTDLKNVIEKSLCVVPQKERKEAVKKSCARVFQALRIDVNNEFEVLYD 292 Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK 290 L AL +GG + V++FHS EDRLVKK F + V+ + K Sbjct: 293 FLEKLPDALASGGRVAVLTFHSGEDRLVKKSFKAL--------------QKQGVYSEVAK 338 Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMR 316 V+ P+ E+ N R+RS K+R ++ Sbjct: 339 DVIRPSAEECNTNPRARSTKMRWAIK 364 >gi|325971088|ref|YP_004247279.1| ribosomal RNA small subunit methyltransferase H [Spirochaeta sp. Buddy] gi|324026326|gb|ADY13085.1| Ribosomal RNA small subunit methyltransferase H [Spirochaeta sp. Buddy] Length = 296 Score = 316 bits (810), Expect = 4e-84, Method: Composition-based stats. Identities = 111/303 (36%), Positives = 165/303 (54%), Gaps = 18/303 (5%) Query: 20 HVPVLLEKVIALLNPAPGK--VILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQ 75 H V+ ++V+ L G+ ++D T G GG++ F N+ I LDRD Sbjct: 5 HYSVMAQEVLQYLVVPEGREATMVDCTCGEGGHTHLFLSTHPNLKVIGLDRDTTIQQKAI 64 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 E M+++ +F F+ + D ++FDLG+SS + RGFSF+K LDM Sbjct: 65 ERMKEFGSRFEPKNIWFNDFFAQGEENVYDLILFDLGISSFHYEESHRGFSFRKDEVLDM 124 Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 R+ S ISA DVVN + L ++ GEE+ + RIA +IV+RR+ A T+++L+S+ Sbjct: 125 RLDESASISAFDVVNGYQEERLADVIFNFGEERYSRRIARSIVERRKLAKISTSEELASI 184 Query: 195 IQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 I K V + + IHPATR+FQA+RI VN E++ + L+ A KALK+GG + V+SFHSL Sbjct: 185 IYKAVPPNYRYGHIHPATRTFQAIRIEVNRELDRIEPALKGAVKALKSGGRIAVISFHSL 244 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 EDR VK F + + +TKK ++PT ++ N SRSAKLR Sbjct: 245 EDRQVKWLFKGMA------------EGDEPAIRILTKKPLIPTDQEREENAASRSAKLRI 292 Query: 314 GMR 316 + Sbjct: 293 IEK 295 >gi|194323503|ref|ZP_03057280.1| S-adenosyl-methyltransferase MraW [Francisella tularensis subsp. novicida FTE] gi|208778997|ref|ZP_03246343.1| S-adenosyl-methyltransferase MraW [Francisella novicida FTG] gi|194322358|gb|EDX19839.1| S-adenosyl-methyltransferase MraW [Francisella tularensis subsp. novicida FTE] gi|208744797|gb|EDZ91095.1| S-adenosyl-methyltransferase MraW [Francisella novicida FTG] Length = 299 Score = 316 bits (810), Expect = 4e-84, Method: Composition-based stats. Identities = 114/303 (37%), Positives = 175/303 (57%), Gaps = 16/303 (5%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMRDYK 82 +++ I LN P + +DATFG GG+S++ +IA D+D A+S +E + Sbjct: 1 MQESINDLNINPQGIYIDATFGRGGHSKAILNRLTTGRLIAFDKDLDAISYARENFQF-- 58 Query: 83 EQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138 F + A+F+ + DY +DG++ DLGVSS Q+D RGFSF +GPLDMRM Sbjct: 59 SNFEIVHASFASIYDYCLQHSLLGKIDGIIMDLGVSSPQLDNAARGFSFTHNGPLDMRMD 118 Query: 139 CS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTTQDLSSLIQ 196 S GI+AS + + +V DL+ I + GEE+ A +IA I +Q+ TT +L+ LI+ Sbjct: 119 VSKGITASQALEELSVDDLSYIFKVYGEERFARKIALRIKDYIQQNGSISTTLELAELIR 178 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 T+ K + +PATR FQALRI+VNNE+++L L + +K+GG + +SFHSLEDR Sbjct: 179 ATI--GKKEKKNPATRCFQALRIYVNNELKDLEALLENILAVIKSGGRIAAISFHSLEDR 236 Query: 257 LVKKFFASRSGKVMAVRH---MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 +VK+ F++ + M+P ++ + ITKK ++++ N RSRSA LR Sbjct: 237 IVKQKFSALINPKQELNRITKMLPQDSSQIKLKWITKKS-KANEDELNQNVRSRSAILRV 295 Query: 314 GMR 316 + Sbjct: 296 VEK 298 >gi|260905297|ref|ZP_05913619.1| S-adenosyl-methyltransferase MraW [Brevibacterium linens BL2] Length = 320 Score = 315 bits (809), Expect = 4e-84, Method: Composition-based stats. Identities = 103/314 (32%), Positives = 171/314 (54%), Gaps = 15/314 (4%) Query: 20 HVPVLLEKVIALL-----NPAPGK---VILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69 HVPVLLE+V+ L+ +++D T G GG+S + ++I +DRD Sbjct: 5 HVPVLLERVVELIGVGVQAARDNGHPPIVVDGTLGMGGHSEAVLTAFPDVHLIGVDRDTQ 64 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFS 126 A+ + + + ++ + A ++ + + D GVD V+ DLGVSS+Q+D +RGFS Sbjct: 65 AIDIATKRLAPFVDRTDIVHAVDDEIPEILDDLGVDRISAVLLDLGVSSLQLDEDERGFS 124 Query: 127 FQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 + + PLDMRM ++A++V+ +L RIL GEEK A RIA+ IV R++ P+ Sbjct: 125 YSRPAPLDMRMDRTQSLTAAEVLATYPEAELRRILREYGEEKMAGRIANIIVTDRETTPW 184 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 +T+Q L++++ + + +K + HPA R+FQALRI VN+E+ L L A +AL GG+ Sbjct: 185 ETSQQLAAMLSRVLPQTK-KKSHPAKRTFQALRIEVNDELGVLRTALPEALRALHLGGVA 243 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 ++ S+ SLED +VKK F + + + I + + ++ N R Sbjct: 244 VIESYQSLEDTIVKKIFRAGTSTSAPPDMPVVPEELQPWLSEIIRGAELADSDEADRNPR 303 Query: 306 SRSAKLRAGMRTVE 319 ++S +LRA + E Sbjct: 304 AKSVRLRAVQKIRE 317 >gi|312373365|gb|EFR21121.1| hypothetical protein AND_17511 [Anopheles darlingi] Length = 384 Score = 315 bits (808), Expect = 5e-84, Method: Composition-based stats. Identities = 122/355 (34%), Positives = 180/355 (50%), Gaps = 48/355 (13%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRD 67 ++ H PV+ + + L P + +D TFGAGG+SR+ G+ +IALDRD Sbjct: 28 TADPASRTTPHRPVMAGETVRFLEPQNNQTFIDMTFGAGGHSRALLGAAPGATIIALDRD 87 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP--------DKGVDGVVFDLGVSSMQID 119 P A E +Y + +FS+L + + +DG++FD G SSMQ D Sbjct: 88 PHAHRLACEMATEYPGRILPVLGSFSELPSLLRTLPEGYGRQRFIDGIIFDFGCSSMQFD 147 Query: 120 CGDRGFSFQKSGPLDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175 RGFS GPLDMRM +SA++V+ + +DL RIL + GEEKQA +IA A Sbjct: 148 EAARGFSIAHDGPLDMRMDKDRCPEQLSAAEVLARVQEQDLARILKVYGEEKQAKKIARA 207 Query: 176 IVKRRQS-APFQTTQDLSSLIQKTVYFSK--------------------NNRIHPATRSF 214 IV R + +TT +L+S++ + ++ H AT++F Sbjct: 208 IVNARFTVKRIETTAELASIVAHCLSSNQATETGPVSSASSFEYRQDKLRRPAHVATKTF 267 Query: 215 QALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH 274 QALRIFVNNE+ E+ G+ A+ L+ GG L+ ++FHSLED +VK+ +A R Sbjct: 268 QALRIFVNNELNEINYGMVLAKHLLRTGGKLVTIAFHSLEDTIVKRHLTGHVVDDVASRV 327 Query: 275 MIP-------------SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 + ++ +TK VVVP++ +V N RSRSAKLRA +R Sbjct: 328 PLQFISHTLAHENDTMQEMMKPNWRQLTKHVVVPSEAEVTANPRSRSAKLRAAVR 382 >gi|271964366|ref|YP_003338562.1| S-adenosylmethionine-dependentmethyltransferase [Streptosporangium roseum DSM 43021] gi|270507541|gb|ACZ85819.1| S-adenosylmethionine-dependentmethyltransferase [Streptosporangium roseum DSM 43021] Length = 330 Score = 315 bits (808), Expect = 6e-84, Method: Composition-based stats. Identities = 112/300 (37%), Positives = 175/300 (58%), Gaps = 10/300 (3%) Query: 15 HTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69 H G HVPV+LE+V+ LL PA P V++DA G GG++ + ++I +DRDP Sbjct: 11 HAPGGHVPVMLERVLELLAPALAGPAPVVVDANLGLGGHAEALLAAHPSLHLIGIDRDPT 70 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFS 126 A+ + Y E+ +L +A +L + + + G VD V+FDLGVSS Q+D +RGF+ Sbjct: 71 AIERSTARLAPYAERTTLVRAVSDELTEVLAEAGRPRVDAVLFDLGVSSPQLDEAERGFA 130 Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 + PLDMRM ++A VVN + +L RIL GEE+ A R+A I+K R + Sbjct: 131 YSYDAPLDMRMDRDQELTAEIVVNTYSAAELIRILRDYGEERFAPRVARLIIKERGNEAI 190 Query: 186 QTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 +T+ L+ +++ + + + +PA R+FQALRI VN E+ L + L +A AL GG Sbjct: 191 TSTKRLAEIVRTAIPAATRRTGGNPAKRTFQALRIEVNAELTALERALPAALDALTLGGR 250 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 ++V+++HSLEDRL K+ A+R+ + +P AH F +T+ +P++E+VA N Sbjct: 251 VVVLAYHSLEDRLTKQVLAARTRETGPPGLPVPLPAHQPRFALLTRGAELPSEEEVARNP 310 >gi|108800230|ref|YP_640427.1| S-adenosyl-methyltransferase MraW [Mycobacterium sp. MCS] gi|119869358|ref|YP_939310.1| S-adenosyl-methyltransferase MraW [Mycobacterium sp. KMS] gi|122976793|sp|Q1B6W3|RSMH_MYCSS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262825146|sp|A1UI62|RSMH_MYCSK RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|108770649|gb|ABG09371.1| methyltransferase [Mycobacterium sp. MCS] gi|119695447|gb|ABL92520.1| S-adenosyl-methyltransferase MraW [Mycobacterium sp. KMS] Length = 324 Score = 315 bits (808), Expect = 6e-84, Method: Composition-based stats. Identities = 121/318 (38%), Positives = 180/318 (56%), Gaps = 18/318 (5%) Query: 19 DHVPVLLEKVIALLNPA-----PGK---VILDATFGAGGYSRSFCKMGS--NVIALDRDP 68 +H+PVLL++ + LL PA P V++DAT GAGG++ F ++I LDRDP Sbjct: 2 EHIPVLLDRCVELLTPALTRRNPDGRGAVLVDATLGAGGHAHRFLSDLPGLHLIGLDRDP 61 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGF 125 A+ E + + ++ SL + + + D + GV G +FDLGVSSMQ+D +RGF Sbjct: 62 QALQIAGERLAPFGDRVSLVRTRYDGIDDALAQTGVAEVSGFLFDLGVSSMQLDRTERGF 121 Query: 126 SFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 S+ PLDMRM ++A+DVVN KD+TRIL GEE+ A+RIA IV+RR P Sbjct: 122 SYSADAPLDMRMDSDAPLTAADVVNTFAEKDITRILREFGEERFAARIAKHIVRRR---P 178 Query: 185 FQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 TT +L L+ + ++ HPA R+FQALRI VN+E++ L + +A AL+ GG Sbjct: 179 LNTTGELVELLYDAIPAPARRTGGHPAKRTFQALRIAVNSELDSLRAAVPAALAALETGG 238 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 ++V+++ SLEDR+VK FA+ + + H F ++T+ T E++ N Sbjct: 239 RIVVMAYQSLEDRIVKTEFAAATASRTPPGLPVELPGHEPEFVALTRGAERATPEEIERN 298 Query: 304 RRSRSAKLRAGMRTVERS 321 RS +LRA + R Sbjct: 299 PRSAPVRLRALEKVAGRP 316 >gi|291278991|ref|YP_003495826.1| S-adenosyl-methyltransferase [Deferribacter desulfuricans SSM1] gi|290753693|dbj|BAI80070.1| S-adenosyl-methyltransferase [Deferribacter desulfuricans SSM1] Length = 306 Score = 315 bits (808), Expect = 6e-84, Method: Composition-based stats. Identities = 107/307 (34%), Positives = 170/307 (55%), Gaps = 9/307 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQE 76 H PVL ++I+ VI+D T G GG++ K +I LDRD A+ E Sbjct: 1 MHKPVLYNELISFFKGLKNGVIVDCTGGGGGHAEGILKEIKPERLIILDRDEDAIKRLNE 60 Query: 77 TMRDYKEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + E ++++ FS++ + + V+G+ D GVS+ + RGFSF+++GPL Sbjct: 61 KFKGM-ENVEIYKSNFSEIDSVLQSLKIEKVNGLYADFGVSNFHLLDSKRGFSFRRNGPL 119 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S ++A VVN+ + + L I GEE+ AS+IA AIVK R+S TT +L+ Sbjct: 120 DMRMDKSLYLTAEKVVNEYSAETLKNIFRKFGEERFASKIADAIVKTRKSKRITTTLELA 179 Query: 193 SLIQKTVYFSKNN-RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +++ + + +HPAT+ F ALRIF+NNE+E + L+ + GG++ +SFH Sbjct: 180 EIVKNAIPERFHKPGVHPATKVFMALRIFINNELESIESLLKKLPTIVDKGGIVAFISFH 239 Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDRLVK++ + + + F+ +TKK + PT++++ N SRSAK Sbjct: 240 SLEDRLVKEYLQYYEKSCICPPDYPVCNCDKEKQFKILTKKPITPTEKEITENPLSRSAK 299 Query: 311 LRAGMRT 317 +R G+R Sbjct: 300 MRVGVRV 306 >gi|157737563|ref|YP_001490246.1| S-adenosyl-methyltransferase MraW [Arcobacter butzleri RM4018] gi|172045652|sp|A8EUF3|RSMH_ARCB4 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|157699417|gb|ABV67577.1| S-adenosyl-methyltransferase [Arcobacter butzleri RM4018] Length = 300 Score = 315 bits (808), Expect = 6e-84, Method: Composition-based stats. Identities = 97/301 (32%), Positives = 161/301 (53%), Gaps = 12/301 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76 H+PVL +V+ I+D T G G+S N +I D+D A++ ++ Sbjct: 4 PHIPVLYNEVLETFKDINEGYIIDCTTGFAGHSSGLLNQNQNIKLICNDQDDEALAFSKK 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + ++ + F + + D + GV+ D+GVSS+Q+D +RGF F+ LDMR Sbjct: 64 RLEKFENGVIFNKGNFEHVIETFKDYEIRGVLADIGVSSLQLDKLERGFGFES-LTLDMR 122 Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M+ + + A+ VVN + +L RI GE ++ ++A IV R PF ++++L+ + Sbjct: 123 MNQNQSLDAATVVNTYSQTELERIFKDYGEVREYKKVASLIVNNR---PFNSSKELADFL 179 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 K + ++HPAT FQA+RI VN+E+ L + S EKA ++ ++SFHSLED Sbjct: 180 SKKMS---KGKLHPATLPFQAIRIEVNDELGVLERLFDSLEKAKLKDCIVAIISFHSLED 236 Query: 256 RLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 R+VK +F S + ++ + A+ + ITKK ++PT ++ N RSRS+KLR Sbjct: 237 RIVKNYFKKWSKSCICPDNVFRCECGNNHALGKIITKKPIIPTALEIKQNPRSRSSKLRV 296 Query: 314 G 314 Sbjct: 297 F 297 >gi|330444381|ref|YP_004377367.1| S-adenosyl-methyltransferase MraW [Chlamydophila pecorum E58] gi|328807491|gb|AEB41664.1| S-adenosyl-methyltransferase MraW [Chlamydophila pecorum E58] Length = 296 Score = 315 bits (808), Expect = 6e-84, Method: Composition-based stats. Identities = 110/303 (36%), Positives = 167/303 (55%), Gaps = 20/303 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI---ALDRDPFAVSCGQE 76 H+PVL+ + ++L + + + D T GAGG++++F ++ A DRDP A++ + Sbjct: 5 HIPVLVHECLSLFSQSTPRKFCDVTVGAGGHAKAFLTAYPSITSYDASDRDPLALTLSSQ 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ-KSGPLDM 135 + +KE+ L A+F L + + DGV+ DLGVSSMQ+D RGFSFQ + LDM Sbjct: 65 ALEPFKERVHLRHASFQDLSHSLEEHVYDGVIADLGVSSMQLDDLSRGFSFQGEEHYLDM 124 Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM + GISAS+V+ ++L +I GEE + A AIV R+ +T +DL Sbjct: 125 RMDPTQGISASEVLQCLREEELGKIFREYGEEPLWRQAAKAIVHFRKHKRIETVRDLKEA 184 Query: 195 IQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 + + +IHP T FQALR+FVN E ++L L SA + L G ++++SF S Sbjct: 185 TSRVFPSYRLRKKIHPLTLIFQALRVFVNGEDQQLRTLLESAMRWLAPQGRVVIISFCSS 244 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 EDR VK+FF + + +TKKV++PT +++ N RSRSAKLR Sbjct: 245 EDRPVKQFFRHAEATGLG--------------RVVTKKVIMPTFQEIRRNPRSRSAKLRC 290 Query: 314 GMR 316 + Sbjct: 291 FEK 293 >gi|187479357|ref|YP_787382.1| S-adenosyl-methyltransferase MraW [Bordetella avium 197N] gi|123738495|sp|Q2KVE4|RSMH_BORA1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|115423944|emb|CAJ50496.1| S-adenosyl-methyltransferase [Bordetella avium 197N] Length = 355 Score = 315 bits (808), Expect = 6e-84, Method: Composition-based stats. Identities = 123/351 (35%), Positives = 183/351 (52%), Gaps = 31/351 (8%) Query: 19 DHVPVLLEKVIALL-------------NPAPG---------KVILDATFGAGGYSRSFCK 56 +H PVLLE + L P + +D TFG GG+SR Sbjct: 4 EHRPVLLEPTVDALLQADFGGRGASRARPRDEAAALTRQATGIFVDGTFGRGGHSRELLG 63 Query: 57 MGS---NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFD 110 ++ D+DP A++ Q + + ++ F+ + + + +G+ DGV+ D Sbjct: 64 RLGPQARLVVFDKDPEAIAVAQALAAE-DARVTVVHGGFATMTEELAARGIERIDGVMLD 122 Query: 111 LGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQA 169 LGVSS QID DRGFSF + GPLDMRM S G + +D + QA+V+++ ++ GEE+ A Sbjct: 123 LGVSSPQIDDADRGFSFMREGPLDMRMDTSRGPTVADWLAQASVEEMREVIADYGEERFA 182 Query: 170 SRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELA 229 ++A AI RR + P TT +L+ + V ++ HPATR+FQALRI++N E+EELA Sbjct: 183 FQVAKAIAARRATRPLHTTLELAECVASAV-RTREKGQHPATRTFQALRIYINRELEELA 241 Query: 230 QGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT 289 + L SA + L GG L V+SFHSLEDR+VK+ A+ + A + + T Sbjct: 242 RALASAIELLVPGGRLAVISFHSLEDRMVKQCIAAAARPAAAHPRLPLRESELPQPILQT 301 Query: 290 KKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDDSFVHLPRLPTLSQFR 340 VV +VA N RSRSA LRA RT + + +P +P ++ Sbjct: 302 LGKVVADDAEVAGNARSRSAILRAAERTSQPLPATGAEDFVPAVPGAAEKG 352 >gi|15604993|ref|NP_219777.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis D/UW-3/CX] gi|76788994|ref|YP_328080.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis A/HAR-13] gi|237804617|ref|YP_002888771.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis B/TZ1A828/OT] gi|255311073|ref|ZP_05353643.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis 6276] gi|255317374|ref|ZP_05358620.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis 6276s] gi|20138894|sp|O84274|RSMH_CHLTR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|88909193|sp|Q3KM90|RSMH_CHLTA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|3328685|gb|AAC67865.1| PBP2B Family methyltransferase [Chlamydia trachomatis D/UW-3/CX] gi|76167524|gb|AAX50532.1| MraW [Chlamydia trachomatis A/HAR-13] gi|231272917|emb|CAX09828.1| S-adenosyl-L-methionine-dependent methyltransferase [Chlamydia trachomatis B/TZ1A828/OT] gi|296435788|gb|ADH17962.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis G/9768] gi|296436713|gb|ADH18883.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis G/11222] gi|296437648|gb|ADH19809.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis G/11074] gi|297140147|gb|ADH96905.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis G/9301] gi|297748402|gb|ADI50948.1| MraW [Chlamydia trachomatis D-EC] gi|297749282|gb|ADI51960.1| MraW [Chlamydia trachomatis D-LC] Length = 300 Score = 315 bits (808), Expect = 7e-84, Method: Composition-based stats. Identities = 111/317 (35%), Positives = 167/317 (52%), Gaps = 25/317 (7%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI---ALD 65 M+ +I H+PVL+++ ++L V D T GAGG++ +F ++ D Sbjct: 1 MTDSI-----PHIPVLVKESLSLFRDRNPVVFCDVTVGAGGHAEAFLTEFPSIERYDGSD 55 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125 RD A++ + + +K++ L A+F ++ D DGV+ DLGVSSMQ++ +RGF Sbjct: 56 RDLSALALSENRLLPFKDRVRLRHASFEEVDTLTSDGTYDGVLADLGVSSMQLNNLERGF 115 Query: 126 SFQ-KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 SFQ + PLDMRM S G++AS+V+N +++ I GEE A A+V R+ Sbjct: 116 SFQGEDHPLDMRMDTSRGMTASEVLNSLREEEIGEIFRNYGEEPLWRSAAAAVVHFRKKK 175 Query: 184 PFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 T +DL + +IHP T FQALRI+VN E +L L SA + L+ G Sbjct: 176 KILTVKDLKDATSGVFPSYRLRKKIHPLTLIFQALRIYVNQEGAQLKVLLDSAFRWLRPG 235 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G L V+SF SL+DR VK F + + + +TKKV++P+ E+ Sbjct: 236 GRLAVISFCSLDDRPVKWAFREAEARGLG--------------KILTKKVIMPSYEETRM 281 Query: 303 NRRSRSAKLRAGMRTVE 319 N RSRSAKLR ++ E Sbjct: 282 NPRSRSAKLRCFEKSFE 298 >gi|193659891|ref|XP_001947856.1| PREDICTED: probable S-adenosyl-L-methionine-dependent methyltransferase CG14683-like [Acyrthosiphon pisum] Length = 351 Score = 315 bits (807), Expect = 7e-84, Method: Composition-based stats. Identities = 125/332 (37%), Positives = 181/332 (54%), Gaps = 28/332 (8%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAV 71 H H PVLLE+ I+ L+P G I+D TFGAGG++ + V LDRDP A Sbjct: 19 QHNSRPHKPVLLEEAISYLSPKKGHNIIDMTFGAGGHTERILQENDTTVVYCLDRDPTAC 78 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG-----VDGVVFDLGVSSMQIDCGDRGFS 126 + ++ Y + + FS L + + G DG++FD G SSMQ D RGFS Sbjct: 79 AMAKQLSERYPNRVIPLKGKFSDLPVLLKNLGCKMNSFDGILFDFGASSMQFDTASRGFS 138 Query: 127 FQKSGPLDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-A 183 K+GPLDMRM I+A+DV+ +A+ DL +I + GEEKQ+ +IA+A+++ R Sbjct: 139 ISKNGPLDMRMDPEEQTITAADVLAKADQSDLYKIFKVYGEEKQSKKIANAVIEARYLFK 198 Query: 184 PFQTTQDLSSLIQKTVYFSKNNRI-----HPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 P +TT+D L+Q + + HPAT+ FQALRIFVNNE+ E+ + A Sbjct: 199 PLKTTRDFCELVQNVCDNEMRSDMLHRPSHPATKVFQALRIFVNNELNEINHSIVLASHY 258 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFA----SRSGKVMAVRHMIPSNAHPAVF--------- 285 LK GG+++ V+FHSLED +VK+ + ++++ P A+ F Sbjct: 259 LKMGGVMVTVAFHSLEDTIVKRHIQGNINENMANTLPLKYINPMQAYDKEFMDVVNDSCW 318 Query: 286 QSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 I K V+ P+ E+V N RSRSA+LRA +R Sbjct: 319 HQIHKHVITPSVEEVESNPRSRSARLRAAVRI 350 >gi|15828964|ref|NP_326324.1| methyltransferase [Mycoplasma pulmonis UAB CTIP] gi|20139101|sp|Q98Q75|RSMH_MYCPU RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|14089907|emb|CAC13666.1| METHYLTRANSFERASE [Mycoplasma pulmonis] Length = 299 Score = 315 bits (807), Expect = 8e-84, Method: Composition-based stats. Identities = 102/307 (33%), Positives = 159/307 (51%), Gaps = 16/307 (5%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H PVLL+ VI L P + +D T G G+S K +I D+D FA+ Sbjct: 1 MQLHKPVLLKDVIENLEINPEGIYVDLTLGYAGHSSEILKKLSSKGKLIGFDQDSFAIEK 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 ++ + + F L F + Y+ VDG + DLGVSS+Q+D RGFS+ K Sbjct: 61 SRQRLSQISDNFVLINDNFVNFKVYLDKMNISFVDGFLLDLGVSSVQLDFAHRGFSYSKL 120 Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 GPLDMRM+ + A D+VN + + L +I + K A ++A IV R P + T Sbjct: 121 GPLDMRMNLDQPLKADDIVNGYDQESLCKIFIENADVKLAKQVAKGIVNNR---PIKDTL 177 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 +L +I+ ++ + + +PA FQA+RI VN+E+ L + L + LK +++++ Sbjct: 178 ELVEVIRSSLPAALVRKKNPAKAVFQAIRIAVNDELIVLKKFLAQSLDFLKKDSKMLIIT 237 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHS+EDR+VK FF + R I V K + PT+E++A NRR++S+ Sbjct: 238 FHSIEDRIVKDFFKRQVKNKHDRRLPIMEQKDYQV------KTIKPTEEEIAQNRRAKSS 291 Query: 310 KLRAGMR 316 KLR + Sbjct: 292 KLRIIKK 298 >gi|225009958|ref|ZP_03700430.1| S-adenosyl-methyltransferase MraW [Flavobacteria bacterium MS024-3C] gi|225005437|gb|EEG43387.1| S-adenosyl-methyltransferase MraW [Flavobacteria bacterium MS024-3C] Length = 308 Score = 315 bits (807), Expect = 8e-84, Method: Composition-based stats. Identities = 105/307 (34%), Positives = 158/307 (51%), Gaps = 23/307 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H PV+L++ +A L P V +D TFG GG+S+ + + A D+D A++ Sbjct: 7 HNPVMLQETVAGLAIDPKGVYVDVTFGGGGHSKEILRQLGPQGRLFAFDQDKDALAN--- 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 T+ D +F+L F ++ ++ G V G++ D GVSS Q D G RGFS + G L Sbjct: 64 TLADA--RFTLIPENFRFIKQFLRFHGIKQVHGILADFGVSSHQFDEGSRGFSTRFEGDL 121 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ SG I+A +VV DL + G+ + + IA AI+ R+ P +TT L Sbjct: 122 DMRMNQSGAITAKEVVGSYAHDDLANMFFQYGDLRNSKAIAAAIIAFREIQPIETTAQLK 181 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 + + + +I +QA+RI VN EI+ + + L L GG L V+S+HS Sbjct: 182 EALAPFLKGFNDAKI--LAPIYQAIRIEVNQEIQVIKEFLAQVPDLLFPGGRLSVLSYHS 239 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV---VVPTQEDVAFNRRSRSA 309 LEDRLVK+F + + + + F+ KKV +PT+E+ N RSRSA Sbjct: 240 LEDRLVKRFIRAGQFEGEPEKDIF------GHFEVPLKKVGGLQIPTKEEQRINTRSRSA 293 Query: 310 KLRAGMR 316 KLR + Sbjct: 294 KLRVAEK 300 >gi|83816833|ref|YP_444696.1| S-adenosyl-methyltransferase MraW [Salinibacter ruber DSM 13855] gi|123529490|sp|Q2S535|RSMH_SALRD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|83758227|gb|ABC46340.1| S-adenosyl-methyltransferase MraW [Salinibacter ruber DSM 13855] Length = 336 Score = 315 bits (807), Expect = 8e-84, Method: Composition-based stats. Identities = 112/323 (34%), Positives = 170/323 (52%), Gaps = 20/323 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H PVL V A L +DAT G GG++R+ + V+ +DRDP A+ ++ Sbjct: 24 HAPVLSHDVQARLVTDASGRYVDATLGGGGHARALLDVLDPDGVVLGIDRDPEALETARD 83 Query: 77 TMRDYKE--QFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + D +E +F TF L+D + + +DG++ DLGVSS QID +RGFSF+ G Sbjct: 84 RLADEREAGRFWAVHGTFGNLRDVLAAEDLIPIDGLLLDLGVSSHQIDVPERGFSFRDEG 143 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM G++A VVN +DL +L GEE +A +IA A+ R P TT+ Sbjct: 144 PLDMRMDPQRGLTAQQVVNGWGERDLRDVLREYGEESRAGQIARALCDAR---PLDTTRA 200 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ +++ + + TR FQALRI VN E++EL Q L A + ++ GG + +S+ Sbjct: 201 LAEVVEDCAPPP--DTVKTLTRVFQALRIVVNAELDELEQVLEQATEVVRTGGRIAAISY 258 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDR VK++ + + R + + P + + + + +V N R+RSA Sbjct: 259 HSLEDRRVKRYLRYGNFEGEPRRDLYGTLVAP--WAETPRGPIEAGESEVEANPRARSAH 316 Query: 311 LRAGMRTVERSIEDDSFVHLPRL 333 LR R +D++ LP L Sbjct: 317 LRVAER----RDDDEAGAPLPPL 335 >gi|227488521|ref|ZP_03918837.1| S-adenosyl-methyltransferase MraW [Corynebacterium glucuronolyticum ATCC 51867] gi|227091415|gb|EEI26727.1| S-adenosyl-methyltransferase MraW [Corynebacterium glucuronolyticum ATCC 51867] Length = 354 Score = 315 bits (807), Expect = 9e-84, Method: Composition-based stats. Identities = 103/320 (32%), Positives = 166/320 (51%), Gaps = 20/320 (6%) Query: 20 HVPVLLEKVIALLN-----PAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVS 72 HVPVL ++++ LL +++D T GAGG++ VI +DRD A+ Sbjct: 31 HVPVLRDRMVELLRRGIAVDGATGIVVDGTLGAGGHTEHLLATDPNARVIGVDRDAQALK 90 Query: 73 CGQETMRDYKEQFSLFQATFSQ-----------LQDYVPDKGVDGVVFDLGVSSMQIDCG 121 + + ++F F + L G+ G +FDLGVSSMQ+D Sbjct: 91 DATARLAPFGDRFVGLNVRFDEWMEAASCSSHPLCQEAAADGISGALFDLGVSSMQLDQE 150 Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGF+++ PLDMRM S GI+A+DV+N + DL R+L GEEK A +IA A+++ R Sbjct: 151 ERGFAYKIDAPLDMRMDPSRGITAADVLNTYSHGDLARVLKTYGEEKFAGKIASAVIRER 210 Query: 181 QSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 + PF + L L+ T+ ++ + HPA R+FQALR+ VN E+ L Q + AL Sbjct: 211 EKEPFTRSGRLVELLYDTIPAPARRHGGHPAKRTFQALRVEVNQELRALEQVIPVTADAL 270 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 GG+++ +S+ SLED++VKK A + + F +T+ ++++ Sbjct: 271 HVGGVMVFMSYQSLEDKIVKKALAKLTTSTNPPGLPVDLPGTEPHFALVTRGSEKASKKE 330 Query: 300 VAFNRRSRSAKLRAGMRTVE 319 + N R+ S ++RA R + Sbjct: 331 IDQNPRAASVRVRAAQRVLN 350 >gi|166154483|ref|YP_001654601.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis 434/Bu] gi|166155358|ref|YP_001653613.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335743|ref|ZP_07223987.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis L2tet1] gi|263446017|sp|B0B7I8|RSMH_CHLT2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263446024|sp|B0BBQ3|RSMH_CHLTB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|165930471|emb|CAP03964.1| S-adenosyl-L-methionine-dependent methyltransferase [Chlamydia trachomatis 434/Bu] gi|165931346|emb|CAP06918.1| S-adenosyl-L-methionine-dependent methyltransferase [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 300 Score = 314 bits (806), Expect = 9e-84, Method: Composition-based stats. Identities = 111/317 (35%), Positives = 167/317 (52%), Gaps = 25/317 (7%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI---ALD 65 M+ +I H+PVL+++ ++L V D T GAGG++ +F ++ D Sbjct: 1 MTDSI-----PHIPVLVKESLSLFRGRNPVVFCDVTVGAGGHAEAFLTEFPSIERYDGSD 55 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125 RD A++ + + +K++ L A+F ++ D DGV+ DLGVSSMQ++ +RGF Sbjct: 56 RDLSALALSENRLLPFKDRVRLRHASFEEVDTLTSDGTYDGVLADLGVSSMQLNNLERGF 115 Query: 126 SFQ-KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 SFQ + PLDMRM S G++AS+V+N +++ I GEE A A+V R+ Sbjct: 116 SFQGEDHPLDMRMDTSRGMTASEVLNSLREEEIGEIFRNYGEEPLWRSAAAAVVHFRKKK 175 Query: 184 PFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 T +DL + +IHP T FQALRI+VN E +L L SA + L+ G Sbjct: 176 KILTVKDLKDATSGVFPSYRLRKKIHPLTLIFQALRIYVNQEGAQLKVLLDSAFRWLRPG 235 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G L V+SF SL+DR VK F + + + +TKKV++P+ E+ Sbjct: 236 GRLAVISFCSLDDRPVKWAFREAEARGLG--------------KILTKKVIMPSYEETRM 281 Query: 303 NRRSRSAKLRAGMRTVE 319 N RSRSAKLR ++ E Sbjct: 282 NPRSRSAKLRCFEKSFE 298 >gi|156405687|ref|XP_001640863.1| predicted protein [Nematostella vectensis] gi|156227999|gb|EDO48800.1| predicted protein [Nematostella vectensis] Length = 378 Score = 314 bits (806), Expect = 1e-83, Method: Composition-based stats. Identities = 129/341 (37%), Positives = 194/341 (56%), Gaps = 24/341 (7%) Query: 11 SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPF 69 S T H+PV+ + + L P G+V +DATFGAGG++ + V A+DRDP Sbjct: 26 STQAETHTLHIPVMSRECLGFLAPKDGEVFVDATFGAGGHTCAILNSAKCKVFAVDRDPV 85 Query: 70 AVSCGQ--ETMRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGD 122 AV Q T +YK Q Q FS+L + + + G+ DG++ D+G SSMQ D Sbjct: 86 AVEIAQVLSTRPEYKGQLIPLQGKFSELFELLSNNGIKKESLDGMLLDIGPSSMQFDDPL 145 Query: 123 RGFSFQKSGPLDMRMSC---------SGISASDVVNQANVKDLTRILGILGEEKQASRIA 173 RGFS K GPLDMRM S +A+DVVN + ++L +L G E+ A+RI+ Sbjct: 146 RGFSLSKDGPLDMRMDSENDTKSSRSSSFTAADVVNSISERELISVLRHYGGERDAARIS 205 Query: 174 HAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRI----HPATRSFQALRIFVNNEIEELA 229 A++K R TT+ L++++ V F + +++ HPAT++FQALRI VN+E+ EL Sbjct: 206 RAVIKARDREHIMTTRQLAAIVANAVGFGRKDKLNRFAHPATKTFQALRILVNDELNELH 265 Query: 230 QGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT 289 + L++A+K L GG L+V+SFHS ED +VK F + + + S++ + + Sbjct: 266 KALKAAKKLLTPGGRLVVISFHSAEDSIVKHFLKDEATRKSS---KTMSDSDSITWLPLH 322 Query: 290 KKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDDSFVHL 330 KKVV P+ +++ FN R RSAKLRA ++T + +E HL Sbjct: 323 KKVVSPSDDEIFFNPRCRSAKLRAVVKTNKEVLELCQLTHL 363 >gi|28571637|ref|NP_788632.1| CG14683, isoform A [Drosophila melanogaster] gi|62472493|ref|NP_001014615.1| CG14683, isoform B [Drosophila melanogaster] gi|74869026|sp|Q9VGY5|MET15_DROME RecName: Full=Probable methyltransferase-like protein 15 homolog gi|15291185|gb|AAK92861.1| GH10770p [Drosophila melanogaster] gi|28381233|gb|AAO41540.1| CG14683, isoform A [Drosophila melanogaster] gi|61679326|gb|AAX52945.1| CG14683, isoform B [Drosophila melanogaster] gi|220945126|gb|ACL85106.1| CG14683-PA [synthetic construct] gi|220954938|gb|ACL90012.1| CG14683-PA [synthetic construct] Length = 356 Score = 314 bits (806), Expect = 1e-83, Method: Composition-based stats. Identities = 122/338 (36%), Positives = 175/338 (51%), Gaps = 31/338 (9%) Query: 11 SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDP 68 S+I T HVPVL + I L P PG D TFGAGG++R + + V ALDRDP Sbjct: 18 SSIDVTTAPHVPVLCDTAIEYLQPVPGGTYFDMTFGAGGHTRRLLEKCPEAKVYALDRDP 77 Query: 69 FAVSCGQETMR--DYKEQFSLFQATFSQLQDYVPDKG-----VDGVVFDLGVSSMQIDCG 121 A ++ ++K + FS L + G VDG++FD G SSMQ D Sbjct: 78 LAHQLARDMSESEEFKGRLIPLLGKFSDLPKLFKEHGLAKNSVDGMLFDFGCSSMQFDEA 137 Query: 122 DRGFSFQKSGPLDMRMS---CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178 RGFS + GPLDMRM G++A+DV+ DL +IL + GEEK A +IA +V Sbjct: 138 VRGFSISRDGPLDMRMDGGHSGGVTAADVLANVEEGDLVKILRMYGEEKAAKKIARGLVD 197 Query: 179 RRQSA-PFQTTQDLSSLIQKTVYFSKNNRI-----HPATRSFQALRIFVNNEIEELAQGL 232 R + +TT+ L+ +I+ + H AT++FQA+RIFVNNE+ E+ G+ Sbjct: 198 ARNALFKIETTKQLADIIENIMDGGTRKDKLRRPAHSATKTFQAIRIFVNNELNEINYGM 257 Query: 233 RSAEKALKAGGLLIVVSFHSLEDRLVKKFFA-------------SRSGKVMAVRHMIPSN 279 A + L+ G L+ ++FHSLED +VK+ S I + Sbjct: 258 VLANEILRVDGRLVTITFHSLEDTIVKRHINGNVLAGAANALPLKYSSHYAIDEPDILES 317 Query: 280 AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 ++ + + V+VP ++VA N RSRSAKLRA ++T Sbjct: 318 LTKKSWKQLHRHVIVPDADEVARNTRSRSAKLRAAVKT 355 >gi|330794884|ref|XP_003285506.1| hypothetical protein DICPUDRAFT_29501 [Dictyostelium purpureum] gi|325084509|gb|EGC37935.1| hypothetical protein DICPUDRAFT_29501 [Dictyostelium purpureum] Length = 372 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 111/329 (33%), Positives = 184/329 (55%), Gaps = 26/329 (7%) Query: 11 SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDP 68 + + + H PV +++V+ +L+P P V +DATFG GG+SR + VIA DRDP Sbjct: 51 TKEYDSYKIHKPVFIKEVLEILDPKPNNVYIDATFGLGGHSRGILESCKDCYVIAFDRDP 110 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG-----VDGVVFDLGVSSMQIDCGDR 123 ++ YK++ + FS ++ + D + G++FD GVSS QID +R Sbjct: 111 NVFELTKDLRTQYKDRLITIGSRFSSMKSALKDHNLENLKISGILFDYGVSSYQIDTAER 170 Query: 124 GFSFQKS--GPLDMRMS---CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178 GFSF+K GPLDMRM+ S +SA+D+VN + ++L I LGEEK +IAH I++ Sbjct: 171 GFSFKKELEGPLDMRMNNKNTSQLSAADIVNTFSEQELRDIFYHLGEEKHTRKIAHEILR 230 Query: 179 RRQ-SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 +R +TT L +++ + + ++ +R F++LR++VN+E+ E+ GLR A+ Sbjct: 231 KRAFGEKIETTSQLVKVVECCMPYPAASK--TISRIFRSLRMYVNDELGEIKYGLREADD 288 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGK----VMAVRHMIPSNAHPAVFQSITKK-- 291 L G L+ +SFHS+EDR+VK++ + K + ++I + +K Sbjct: 289 ILSPGSPLLAISFHSMEDRIVKQYLNNNGLKSDYDTINNNNVIKYELPKS-----SKHTS 343 Query: 292 VVVPTQEDVAFNRRSRSAKLRAGMRTVER 320 + P+ E++ +N RS+SA LR +RT + Sbjct: 344 PIFPSDEELEWNPRSKSAILRWAVRTQNK 372 >gi|195953230|ref|YP_002121520.1| S-adenosyl-methyltransferase MraW [Hydrogenobaculum sp. Y04AAS1] gi|263456148|sp|B4U8T1|RSMH_HYDS0 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|195932842|gb|ACG57542.1| S-adenosyl-methyltransferase MraW [Hydrogenobaculum sp. Y04AAS1] Length = 296 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 104/303 (34%), Positives = 170/303 (56%), Gaps = 28/303 (9%) Query: 19 DHVPVLLEKVIALL-NPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQ 75 H VLL++V L NP P K+ +DAT G GG++++ + + +I +D+D A+ + Sbjct: 1 MHKSVLLKEVTDFLSNPCP-KIHIDATLGLGGHAKALLEVCKDTFLIGIDKDENAIEIAK 59 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E ++ + F + +F + ++G D ++FD GVSS+Q+D + GFSFQ+ Sbjct: 60 EKLKGFNAVF--YHGSFKDFDIVLKEEGLLYFDSILFDFGVSSLQLDEEE-GFSFQREDF 116 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM +A V+N K+L I GEE+ + +IA +IV++R+ P +TT++L Sbjct: 117 LDMRMDKRQQKTAYIVINTYKEKELADIFYKYGEERLSKKIARSIVEKRKKKPIETTKEL 176 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++ + K ++I+PAT+ FQALRI VN+E+E++ L K G +SFH Sbjct: 177 VDIVSSCYPY-KYSKINPATKVFQALRIEVNSELEDIKIALSKLLDFAKEGSKFAFISFH 235 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDRLVK+F + + K + +KK + P+ E++ +N+R+RSAKL Sbjct: 236 SLEDRLVKEFIKNNADK----------------LKVCSKKPITPSDEELLYNKRARSAKL 279 Query: 312 RAG 314 R Sbjct: 280 RCA 282 >gi|330836624|ref|YP_004411265.1| Ribosomal RNA small subunit methyltransferase H [Spirochaeta coccoides DSM 17374] gi|329748527|gb|AEC01883.1| Ribosomal RNA small subunit methyltransferase H [Spirochaeta coccoides DSM 17374] Length = 314 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 104/303 (34%), Positives = 156/303 (51%), Gaps = 7/303 (2%) Query: 20 HVPVLLEKVIALLNPAPG--KVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQ 75 H PVL E+V+ L +++D T G GG++ + N+ I LDRD + Sbjct: 6 HQPVLAEEVLDALVIPLDVPALMIDCTTGEGGHTGMMLERHPNLTVIGLDRDEAIQKKAR 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + Y +F F D ++FDLG+S RGFSFQK PLDM Sbjct: 66 TRLESYGGRFIPTLTWFDDFLTTYEGTAPDAILFDLGISMFHYVESGRGFSFQKPEPLDM 125 Query: 136 RMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 R+ IS +D+VN + L I+ GEE+ + +IA AI + R + L+ L Sbjct: 126 RLDAQDAISVADIVNTYEERRLADIIYAYGEERHSRKIAAAICRARAEERLTYSDRLAEL 185 Query: 195 IQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 I+ V + + RIHPAT++FQALRI VN+E++ + + +A K ++ GG + V++FHSL Sbjct: 186 IKSAVPPAYRFGRIHPATKTFQALRIEVNHELDRIKPAIEAALKIIRPGGRIAVITFHSL 245 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 EDR VK F + R ++ P F ITKK +VP++++ N +RSAKLR Sbjct: 246 EDRKVKWIFKEAAWDTEETREKKTASTFPP-FAIITKKPIVPSEDECRRNPAARSAKLRV 304 Query: 314 GMR 316 + Sbjct: 305 IEK 307 >gi|149193782|ref|ZP_01870880.1| S-adenosyl-methyltransferase MraW [Caminibacter mediatlanticus TB-2] gi|149135735|gb|EDM24213.1| S-adenosyl-methyltransferase MraW [Caminibacter mediatlanticus TB-2] Length = 302 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 92/299 (30%), Positives = 152/299 (50%), Gaps = 13/299 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76 HVPVLL + + L +D T G GG+S + + + +I +D+D A++ + Sbjct: 4 PHVPVLLNETVNLYKNIKKGYFIDCTLGFGGHSEAILEKYPHIKLIGIDQDIDALNFAKN 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 ++ Y + S+ + + G++ D+GVSS Q+D +RGF+F + LDMR Sbjct: 64 RLKKYANRVEFINKRASEALSELKGLNIAGILADIGVSSFQLDNKERGFTFDSN-TLDMR 122 Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M+ + SA DV+N + L I E ++ +IA I+K R P + ++LS ++ Sbjct: 123 MNKNQEFSAKDVINFYDKNSLEEIFKKYAESRKYKKIADLIIKNR---PINSNKELSEIL 179 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + +K FQA+RI VNNE+ EL + L +E G +L +++FHSLED Sbjct: 180 MQAGIKNK----KDLAPIFQAIRIEVNNELNELEKILDLSEDIAIDGTILGIITFHSLED 235 Query: 256 RLVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 R+VK F + + + I + + +TKK + + E++ N RSRSAKLR Sbjct: 236 RIVKNRFKEWAKRCICPDEAIKCECGGNNQKGKILTKKPITASNEEIKKNPRSRSAKLR 294 >gi|255348632|ref|ZP_05380639.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis 70] gi|255503172|ref|ZP_05381562.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis 70s] gi|255506850|ref|ZP_05382489.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis D(s)2923] gi|289525311|emb|CBJ14787.1| S-adenosyl-L-methionine-dependent methyltransferase [Chlamydia trachomatis Sweden2] gi|296434861|gb|ADH17039.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis E/150] gi|296438581|gb|ADH20734.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis E/11023] Length = 300 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 111/317 (35%), Positives = 167/317 (52%), Gaps = 25/317 (7%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI---ALD 65 M+ +I H+PVL+++ ++L V D T GAGG++ +F ++ D Sbjct: 1 MTDSI-----PHIPVLVKESLSLFRDRNPVVFCDVTVGAGGHAEAFLTEFPSIERYDGSD 55 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125 RD A++ + + +K++ L A+F ++ D DGV+ DLGVSSMQ++ +RGF Sbjct: 56 RDLSALALSENRLLPFKDRVRLRHASFEEVDTLTSDGTYDGVLADLGVSSMQLNNLERGF 115 Query: 126 SFQ-KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 SFQ + PLDMRM S G++AS+V+N +++ I GEE A A+V R+ Sbjct: 116 SFQGEDHPLDMRMDTSRGMTASEVLNSLREEEIGEIFRNYGEESLWRSAAAAVVHFRKKK 175 Query: 184 PFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 T +DL + +IHP T FQALRI+VN E +L L SA + L+ G Sbjct: 176 KILTVKDLKDATSGVFPSYRLRKKIHPLTLIFQALRIYVNQEGAQLKVLLDSAFRWLRPG 235 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G L V+SF SL+DR VK F + + + +TKKV++P+ E+ Sbjct: 236 GRLAVISFCSLDDRPVKWAFREAEARGLG--------------KILTKKVIMPSYEETRM 281 Query: 303 NRRSRSAKLRAGMRTVE 319 N RSRSAKLR ++ E Sbjct: 282 NPRSRSAKLRCFEKSFE 298 >gi|32266778|ref|NP_860810.1| S-adenosyl-methyltransferase MraW [Helicobacter hepaticus ATCC 51449] gi|42559453|sp|Q7VGP1|RSMH_HELHP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|32262830|gb|AAP77876.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449] Length = 317 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 112/310 (36%), Positives = 172/310 (55%), Gaps = 16/310 (5%) Query: 19 DHVPVLLEKVIALLNP-APGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQ 75 H VL ++I L+ +++D T G GG++ + N V A D+D +A++ + Sbjct: 2 KHYSVLKNEMIQALDCLKEDSILIDCTLGFGGHTIGALQAYPNIEVYAFDKDIYALNLAK 61 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E ++ Y + FSQ D VP+ V G++ D+GVSSMQ+D RGFSF S Sbjct: 62 ERLKPYLQNIHFCHNAFSQFLDIVPNVVLPRVRGIIADIGVSSMQLDETQRGFSFVSS-T 120 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + ++A+ V+N + L I I GE +Q+ ++A I R+ PF + +L Sbjct: 121 LDMRMDTRADLNATKVINTYSPIRLEEIFRIYGEVRQSKKLAEIIAYERKKKPFSSCLEL 180 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG----GLLIV 247 S+LI++ +F + IHPAT +FQALRI VN+E+ EL + L + E A G + + Sbjct: 181 STLIEQ--HFPRVGGIHPATLAFQALRIEVNDELGELKRLLHNIELAFDEGKIASCRVGI 238 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 +SFHSLEDR++K+ F S + + A Q +TKK ++PT +++A N+R Sbjct: 239 ISFHSLEDRIIKQCFKQWSKSCICAEESLRCECGNNHAKGQILTKKPIIPTPQEIAQNKR 298 Query: 306 SRSAKLRAGM 315 SRSAKLR Sbjct: 299 SRSAKLRIFE 308 >gi|189485180|ref|YP_001956121.1| SAM-dependent methyltransferase [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|263504473|sp|B1GZH8|RSMH_UNCTG RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|170287139|dbj|BAG13660.1| SAM-dependent methyltransferase [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 291 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 109/304 (35%), Positives = 164/304 (53%), Gaps = 23/304 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77 H+PV+ + L PG + +D TFG GG++ ++ +A D D + E Sbjct: 3 HIPVMPLETSRYLIGKPGGLYVDCTFGGGGHALYLLDKFKDIKIVAFDWDEDSSKRFIER 62 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 +++ + + + F ++ + VDG++ D+GVSS Q DRGFSF G LD Sbjct: 63 EKEFSGRVTFIRDNFKNVKKALSALNISKVDGILADIGVSSKQFGDLDRGFSFNS-GTLD 121 Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM +G A +VVN + +DL I GEE+++ +IA AI+ RR+ T +L + Sbjct: 122 MRMDKRNGFEAKEVVNSYSYEDLADIFYKYGEERKSRQIASAILLRRKRGIINTASELQT 181 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 +I RI+PAT+ FQALRIFVN+E+E LA L A + L AGG +++SFHSL Sbjct: 182 VICSV--KRPEGRINPATKVFQALRIFVNSELENLAVLLSDAPELLNAGGRTVIISFHSL 239 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 EDR+VK+ F S + ++ +TKKVV +E+V N SRSA++RA Sbjct: 240 EDRIVKQNFKRNSECGI--------------YKILTKKVVTALKEEVKINPGSRSARIRA 285 Query: 314 GMRT 317 +T Sbjct: 286 AEKT 289 >gi|237802695|ref|YP_002887889.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis B/Jali20/OT] gi|231273929|emb|CAX10721.1| S-adenosyl-L-methionine-dependent methyltransferase [Chlamydia trachomatis B/Jali20/OT] Length = 300 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 110/317 (34%), Positives = 167/317 (52%), Gaps = 25/317 (7%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI---ALD 65 M+ +I H+PVL+++ ++L V D T GAGG++ +F ++ D Sbjct: 1 MTDSI-----PHIPVLVKESLSLFRDRNPVVFCDVTVGAGGHAEAFLTEFPSIERYDGSD 55 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125 RD A++ + + +K++ L A+F ++ D DGV+ DLGVSSMQ++ +RGF Sbjct: 56 RDLSALALSENRLLPFKDRVRLRHASFEEVDTLTSDGTYDGVLADLGVSSMQLNNLERGF 115 Query: 126 SFQ-KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 SFQ + PLDMRM S G++AS+V+N +++ I GEE A A+V R+ Sbjct: 116 SFQGEDHPLDMRMDTSRGMTASEVLNSLREEEIGEIFRNYGEEPLWRSAAAAVVHFRKKK 175 Query: 184 PFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 T +DL + +IHP T FQALRI+VN E +L L S+ + L+ G Sbjct: 176 KILTVKDLKDATSGVFPSYRLRKKIHPLTLIFQALRIYVNQEGAQLKVLLDSSFRWLRPG 235 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G L V+SF SL+DR VK F + + + +TKKV++P+ E+ Sbjct: 236 GRLAVISFCSLDDRPVKWAFREAEARGLG--------------KILTKKVIMPSYEETRM 281 Query: 303 NRRSRSAKLRAGMRTVE 319 N RSRSAKLR ++ E Sbjct: 282 NPRSRSAKLRCFEKSFE 298 >gi|317506606|ref|ZP_07964398.1| MraW methylase [Segniliparus rugosus ATCC BAA-974] gi|316255115|gb|EFV14393.1| MraW methylase [Segniliparus rugosus ATCC BAA-974] Length = 316 Score = 313 bits (803), Expect = 2e-83, Method: Composition-based stats. Identities = 107/312 (34%), Positives = 171/312 (54%), Gaps = 8/312 (2%) Query: 24 LLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETM 78 +L +V++LL PA P V++D T G GG++R+ + V+ +DRD A+ +E + Sbjct: 1 MLNRVVSLLAPAFDAPDPVLVDGTLGLGGHTRALLERFPTLRVVGMDRDAKAIEVAKERL 60 Query: 79 RDYKEQFSLFQATFSQLQDYVPD-KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 ++ A + +++ + D + V G + DLGVSSMQ+D +RGF++ K PLDMRM Sbjct: 61 GGLADRVRFVHARYDEVERALGDGENVQGYLLDLGVSSMQLDQAERGFAYSKDAPLDMRM 120 Query: 138 SCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 S ++A +V+ K+L R+L GEE+ A+RIA IV+RR + P ++ +L LI Sbjct: 121 DTSAELTAHEVLATYGEKELARVLRTYGEERFAARIAAEIVRRRATEPLASSAELVRLID 180 Query: 197 KTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + K HPA R+FQALR+ VN+E+ L L A AL G ++V+++ SLED Sbjct: 181 DVIPAKAKRTGGHPAKRTFQALRVEVNDELGSLRAVLPKALAALAPQGRIVVLAYQSLED 240 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 R+VK FA + + + A F S+T+ + +E+ + N R+ S +LRA Sbjct: 241 RIVKDEFARATTSRTPIGLPVELPGFEAEFVSLTRGAELAGEEETSENPRAASVRLRAVE 300 Query: 316 RTVERSIEDDSF 327 R E+ Sbjct: 301 RVSGNRGEEGGS 312 >gi|315655245|ref|ZP_07908146.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Mobiluncus curtisii ATCC 51333] gi|315490500|gb|EFU80124.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Mobiluncus curtisii ATCC 51333] Length = 378 Score = 313 bits (803), Expect = 2e-83, Method: Composition-based stats. Identities = 118/357 (33%), Positives = 183/357 (51%), Gaps = 36/357 (10%) Query: 20 HVPVLLEKVIALLNPA--------------------PGKVILDATFGAGGYSRSFCKMGS 59 H PVL E LL PA G V++DAT G GG+S + Sbjct: 8 HQPVLAEVCADLLAPALTPASESVNPLSSTADFHNVQGPVLVDATLGMGGHSAYLLERHP 67 Query: 60 --NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVS 114 +I +DRDP A + D+ + S+ T+ +L D + G VDG++ DLGVS Sbjct: 68 QLRIIGIDRDPQARDLAASRLSDFANRLSIVGTTYGELDDVLAQHGLRQVDGILADLGVS 127 Query: 115 SMQIDCGDRGFSFQK-SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRI 172 S+Q+D +RGF++ PLDMRM+ S G +A+D +N A +++ +L GEEK + + Sbjct: 128 SLQLDEAERGFAYAHPEAPLDMRMNQSSGFTAADFLNLAQAEEIAAVLHTYGEEKFSWPL 187 Query: 173 AHAIVKRRQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQG 231 A AIVK RQ+ P Q + L +I+ T+ ++ +PA R+FQALR+ VN+E+ +L + Sbjct: 188 AKAIVKARQNQPLQVSGQLVQIIRDTIPAPARRTGGNPAKRTFQALRVAVNDELGDLERF 247 Query: 232 LRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKK 291 L A +++ GG ++V S+ SLEDRLVK+ FA+ + + +T Sbjct: 248 LTKALASVRVGGRIVVESYQSLEDRLVKRAFAAGIHPAAPKGLPVLPEQAQPWLRDLTHG 307 Query: 292 VVVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDDSFVHL--------PRLPTLSQFR 340 + + +VA N R+ S +LRA ++T E E + + R PTL + R Sbjct: 308 SRLADESEVAQNPRAASLRLRAVVKTREPHPETRAGNLVKTKPKPAEKRFPTLMKLR 364 >gi|302770288|ref|XP_002968563.1| hypothetical protein SELMODRAFT_89216 [Selaginella moellendorffii] gi|300164207|gb|EFJ30817.1| hypothetical protein SELMODRAFT_89216 [Selaginella moellendorffii] Length = 373 Score = 313 bits (803), Expect = 2e-83, Method: Composition-based stats. Identities = 104/315 (33%), Positives = 158/315 (50%), Gaps = 26/315 (8%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCGQ 75 H PVL+ + + K LD T GAGG++ + + + +D DP A+ + Sbjct: 65 PHTPVLVRQFLEHFEGRSVKTFLDCTVGAGGHAFEIIQAHPELETFVGMDVDPCALKLAR 124 Query: 76 ETMRDYKE---QFSLFQATFSQLQD-------YVPDKGVDGVVFDLGVSSMQIDCGDRGF 125 + + D + LF A F ++ + ++G DG++ DLG+SSMQ+D +RGF Sbjct: 125 QRLSDLSGSMAKVDLFHANFKNMKKDLKERNPELLERGFDGILLDLGLSSMQVDAPERGF 184 Query: 126 SFQKSGPLDMRMSCS---GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 S+ GPLDMRM S G++A + N + ++ RIL GEE + +A IV R + Sbjct: 185 SYYLDGPLDMRMDSSDVLGLTAEAICNNWSAAEIGRILREYGEEMRWKFLASRIVDARLN 244 Query: 183 APFQTTQDLSSLIQ-KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 +TT+DL+S++ + HPA R+FQALRI VN+E++ L + A L Sbjct: 245 GGIKTTKDLASVVGGRFTSGRFKRARHPAARTFQALRIAVNDELKSLRSAIGQASSCLAP 304 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 GG L V+SFHSLEDR+VK F S + + F +T + ++ Sbjct: 305 GGRLAVISFHSLEDRIVKYQFKELS---------LVFDKVDLAFMLLTTSPITADAAEIE 355 Query: 302 FNRRSRSAKLRAGMR 316 N R RSAK+R R Sbjct: 356 KNSRCRSAKMRVIQR 370 >gi|171057205|ref|YP_001789554.1| S-adenosyl-methyltransferase MraW [Leptothrix cholodnii SP-6] gi|263456313|sp|B1XY20|RSMH_LEPCP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|170774650|gb|ACB32789.1| S-adenosyl-methyltransferase MraW [Leptothrix cholodnii SP-6] Length = 325 Score = 313 bits (803), Expect = 3e-83, Method: Composition-based stats. Identities = 122/307 (39%), Positives = 179/307 (58%), Gaps = 13/307 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H VLL + + L P V LD T+G GG+SR + +IA+DRDP A++ + Sbjct: 11 HRTVLLHEAVDALVQRPAGVYLDGTYGRGGHSRLILERLDPAGRLIAIDRDPEALANARS 70 Query: 77 T-MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 R +FS+ A F++ + + + GV DG++ DLG+SS QID +RGFSF+ GP Sbjct: 71 GETRIDDPRFSIHHARFAEFESVLDEAGVGQLDGLLLDLGISSPQIDNPERGFSFRFDGP 130 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQTTQD 190 LDMRM + G SA++ + A + + ++ GEE+ A +A AIV RR+ P Q T + Sbjct: 131 LDMRMDPTRGQSAAEFLASAPFERIKEVVRDYGEERFADAVAKAIVARREEGRPVQRTAE 190 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L++L+ V + + PATR+FQALRI VN E+EE+ QGL A L GG L V++F Sbjct: 191 LAALVAGAVKTRERGQ-DPATRTFQALRILVNAELEEVEQGLNRALARLAPGGRLAVIAF 249 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDR+VK F A + +V R M + P + +++ + + P + +VA N R+RSA Sbjct: 250 HSLEDRIVKTFIARHAREVY-DRRMPYATPAPLLMRAVAR--IKPGEAEVAANPRARSAI 306 Query: 311 LRAGMRT 317 LR RT Sbjct: 307 LRVAERT 313 >gi|89902202|ref|YP_524673.1| S-adenosyl-methyltransferase MraW [Rhodoferax ferrireducens T118] gi|122996777|sp|Q21SW1|RSMH_RHOFD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|89346939|gb|ABD71142.1| methyltransferase [Rhodoferax ferrireducens T118] Length = 309 Score = 313 bits (802), Expect = 3e-83, Method: Composition-based stats. Identities = 119/314 (37%), Positives = 170/314 (54%), Gaps = 23/314 (7%) Query: 20 HVPVLLEKVIALLNPAPG----------KVILDATFGAGGYSRSFCKM---GSNVIALDR 66 H VLL + + L P +V +DATFG GG+SR +IA D+ Sbjct: 3 HTTVLLNEAVDALFCNPDATADASATGAQVYVDATFGRGGHSRLILSRMTPTDRLIAFDK 62 Query: 67 DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126 D A+ + +FS+ FS L + +P V GV+ DLG+SS QID RGFS Sbjct: 63 DAEALVEAGNI---HDSRFSIRHQGFSHLDE-LPPASVAGVLLDLGISSPQIDNPARGFS 118 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA-P 184 F+ GPLDMRM + GIS + + A + + ++ GEE+ A IA AIV RRQ P Sbjct: 119 FRFEGPLDMRMDTTRGISVAQWLANAETEKIAEVIRDYGEERFAGPIAKAIVARRQERGP 178 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 +T +L+ L+ TV + + +PATR+FQA RIF+N E+EEL Q L ++ L GG Sbjct: 179 ISSTTELAQLVADTVKTREPGQ-NPATRTFQAFRIFINAELEELQQALAASLLVLAPGGR 237 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 L+V+SFHSLEDR+VK+F A S V R + +++ + + P+ +V+ N Sbjct: 238 LVVISFHSLEDRIVKQFIAQHSRDVY-DRRAPFAPPKVMQLKALAR--LRPSAAEVSANP 294 Query: 305 RSRSAKLRAGMRTV 318 R+RSA +R RT Sbjct: 295 RARSAIMRVAQRTA 308 >gi|42524595|ref|NP_969975.1| S-adenosyl-methyltransferase [Bdellovibrio bacteriovorus HD100] gi|110826013|sp|P62469|RSMH_BDEBA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|39576805|emb|CAE78034.1| S-adenosyl-methyltransferase [Bdellovibrio bacteriovorus HD100] Length = 328 Score = 313 bits (802), Expect = 3e-83, Method: Composition-based stats. Identities = 117/309 (37%), Positives = 171/309 (55%), Gaps = 26/309 (8%) Query: 19 DHVPVLLEKVIALLNPAPGKV---ILDATFGAGGYSRSFCKMGSNVIA--LDRDPFAVSC 73 +H PVLL++V+A P K D TFG GG+ + + A +D+D A++ Sbjct: 32 EHYPVLLQEVLAAFYPLRDKKELSYFDGTFGRGGHYMALKYAYPQMKATVMDQDLAAIAF 91 Query: 74 GQETM--RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 Q K Q ++ F+Q ++ + D ++ DLGVSS Q+D G+RGFSF G Sbjct: 92 AQSRFQTEVEKGQLNVIHGNFTQFSEHNLN-NFDMMLLDLGVSSPQLDQGERGFSFYNDG 150 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM+ G++A ++N A+ +L RI GE + SR+ AIV R++ FQTT Sbjct: 151 PLDMRMNQQQGLTAEVLINTASEDELIRIFKEYGEVYRPSRVVRAIVNDRKTKAFQTTGA 210 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ LI++ + HPAT+ F ALR+ VN+E+E +A+ + +AL GG L V+SF Sbjct: 211 LAGLIERVD-GWQVKGHHPATKYFMALRLAVNSELEVVAEAIPKMIRALNPGGRLAVISF 269 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDR+VK F + +++TKKV+VPTQE+ N RSRSAK Sbjct: 270 HSLEDRIVKNIFRESED----------------LGRTVTKKVIVPTQEECDRNSRSRSAK 313 Query: 311 LRAGMRTVE 319 LR R+ + Sbjct: 314 LRIFERSAQ 322 >gi|315656834|ref|ZP_07909721.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492789|gb|EFU82393.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 378 Score = 313 bits (802), Expect = 3e-83, Method: Composition-based stats. Identities = 118/357 (33%), Positives = 182/357 (50%), Gaps = 36/357 (10%) Query: 20 HVPVLLEKVIALLNPA--------------------PGKVILDATFGAGGYSRSFCKMGS 59 H PVL LL PA G V++DAT G GG+S + Sbjct: 8 HQPVLAAVCADLLAPALTPTSEAVTPLSSTADFHNVQGPVLVDATLGMGGHSAYLLESHP 67 Query: 60 --NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVS 114 +I +DRDP A + D+ + S+ T+ +L D + G VDG++ DLGVS Sbjct: 68 QLRIIGIDRDPQARDLAATRLSDFANRLSIVGTTYGELDDVLAQHGLSQVDGILADLGVS 127 Query: 115 SMQIDCGDRGFSFQK-SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRI 172 S+Q+D +RGF++ PLDMRM+ S G +A+D +N A V+++ +L GEEK + + Sbjct: 128 SLQLDEAERGFAYAHPEAPLDMRMNQSSGFTAADFLNLAEVEEIAAVLHTYGEEKFSWPL 187 Query: 173 AHAIVKRRQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQG 231 A AIVK RQ+ P Q + L +I+ T+ ++ +PA R+FQALR+ VN+E+ +L + Sbjct: 188 AKAIVKARQNQPLQVSGQLVQIIRDTIPAPARRTGGNPAKRTFQALRVAVNDELGDLERF 247 Query: 232 LRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKK 291 L A +++ GG ++V S+ SLEDRLVK+ FA+ + + +T Sbjct: 248 LTKALASVRVGGRIVVESYQSLEDRLVKRAFAAGIHPAAPKGLPVLPEQAQPWLRDLTHG 307 Query: 292 VVVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDDSFVHLP--------RLPTLSQFR 340 + + +VA N R+ S +LRA +T E E + + R PTL + R Sbjct: 308 SRLADESEVAQNPRAASLRLRAVEKTREPHPETRAGNLVRTKPKPAEKRFPTLMKLR 364 >gi|269115003|ref|YP_003302766.1| S-adenosyl-methyltransferase mraW [Mycoplasma hominis] gi|268322628|emb|CAX37363.1| S-adenosyl-methyltransferase mraW [Mycoplasma hominis ATCC 23114] Length = 300 Score = 312 bits (801), Expect = 3e-83, Method: Composition-based stats. Identities = 97/304 (31%), Positives = 165/304 (54%), Gaps = 14/304 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76 +H+PVLL +VI L+ P + +D T G GG+S+ K +I D+D A++ +E Sbjct: 2 EHIPVLLNEVIEQLSIKPDGIYVDLTLGRGGHSQEILKRLTTGKLICFDKDIQAINESRE 61 Query: 77 TMRDYKEQFSLFQATFSQL---QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + F L ++ F + + VDG++ DLGVSS Q+D +RGFS+ + L Sbjct: 62 KLIKISQNFILIKSDFRNITCELKKLNIDKVDGILADLGVSSPQLDDPNRGFSYSINSDL 121 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + ++A +++N A K++ IL + K ++ IA AIVK R P + L+ Sbjct: 122 DMRMDLDNTLTAKEIINNATEKEIIDILQSNADVKLSNLIAKAIVKNR---PISDSFTLN 178 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ ++ + +P+ FQA RI VN+E+ L++ L LK G + +++FHS Sbjct: 179 QIIKDSLPAKIVRQKNPSKAVFQAFRIAVNDELNALSEMLSQLPNLLKKDGKIAIITFHS 238 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 ED +VKKF+ + + ++ ++ H +KV+ P+ ++ N+RSRSAKLR Sbjct: 239 KEDVIVKKFYQNLNYFDPKLKKILIVETHKW-----HQKVIFPSSKEEEINKRSRSAKLR 293 Query: 313 AGMR 316 + Sbjct: 294 VITK 297 >gi|15835162|ref|NP_296921.1| S-adenosyl-methyltransferase MraW [Chlamydia muridarum Nigg] gi|270285334|ref|ZP_06194728.1| S-adenosyl-methyltransferase MraW [Chlamydia muridarum Nigg] gi|270289350|ref|ZP_06195652.1| S-adenosyl-methyltransferase MraW [Chlamydia muridarum Weiss] gi|301336731|ref|ZP_07224933.1| S-adenosyl-methyltransferase MraW [Chlamydia muridarum MopnTet14] gi|20139249|sp|Q9PKC2|RSMH_CHLMU RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|7190584|gb|AAF39384.1| conserved hypothetical protein [Chlamydia muridarum Nigg] Length = 302 Score = 312 bits (801), Expect = 4e-83, Method: Composition-based stats. Identities = 113/321 (35%), Positives = 169/321 (52%), Gaps = 25/321 (7%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI---ALD 65 M+ +I H+PVL+++ ++L D T GAGG++ +F ++ D Sbjct: 1 MTDSI-----PHIPVLVKESLSLFQDQHPTTFCDVTVGAGGHAEAFLTSFPSIEHYDGSD 55 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125 RD A++ ++ + +K + L A+F ++ PD DGV+ DLGVSSMQ+ +RGF Sbjct: 56 RDLSALALSEKRLLPFKGRVCLRHASFDEVNALTPDGMYDGVLADLGVSSMQLTDLERGF 115 Query: 126 SFQ-KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 SFQ + PLDMRM S GI+AS+V+N +++ I GEE A+A+V R+ Sbjct: 116 SFQGEDHPLDMRMDTSRGITASEVLNSLREEEIGEIFRKYGEEPLWRSAANAVVHFRKKK 175 Query: 184 PFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 T +DL + +IHP T FQALRI+VN E +L L SA + L+ G Sbjct: 176 KILTVKDLKDATSGVFPSYRLRKKIHPLTLIFQALRIYVNQEGAQLKVLLDSALRWLRPG 235 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G L ++SF SL+DR VK F + + +TKKV++PT E+ Sbjct: 236 GRLAIISFCSLDDRPVKWAFREAEARGEG--------------RVLTKKVIMPTYEETRK 281 Query: 303 NRRSRSAKLRAGMRTVERSIE 323 N RSRSAKLR ++++ S E Sbjct: 282 NPRSRSAKLRCFEKSLKISDE 302 >gi|195389917|ref|XP_002053618.1| GJ23252 [Drosophila virilis] gi|194151704|gb|EDW67138.1| GJ23252 [Drosophila virilis] Length = 364 Score = 312 bits (801), Expect = 4e-83, Method: Composition-based stats. Identities = 123/333 (36%), Positives = 174/333 (52%), Gaps = 31/333 (9%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSC 73 HVPVL + I L P +D TFGAGG++R + V ALDRDP A Sbjct: 31 PSAPHVPVLCQTAIDYLQPVASGKYIDMTFGAGGHTRRLLDSCPDTTVYALDRDPLAHEL 90 Query: 74 GQETMR--DYKEQFSLFQATFSQLQDYV-----PDKGVDGVVFDLGVSSMQIDCGDRGFS 126 Q + DY + FS+L + P DG++FD G SSMQ D RGFS Sbjct: 91 AQRMSQENDYAGRLVPLLGKFSELPQLLQSLDVPRHSFDGMLFDFGCSSMQFDEAARGFS 150 Query: 127 FQKSGPLDMRMSCS---GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS- 182 +GPLDMRM C ISA+DV+ +A DL RIL + GEEK A +IA AIV+ R + Sbjct: 151 IAHNGPLDMRMDCGRSGSISAADVLARAEEADLARILRVYGEEKAAKKIARAIVEARSAL 210 Query: 183 APFQTTQDLSSLIQKTVYFSKN-----NRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 +TT+ L+ L+ + + H AT++FQALRIFVNNE+ E+ G+ A++ Sbjct: 211 QRIETTRQLADLVAAVLGDGQRLDRLQRPAHAATKTFQALRIFVNNELNEINYGMLLAQE 270 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-------------PAV 284 L+A G L+ ++FHSLED +VK+ + +A + H + Sbjct: 271 LLRAQGRLVAITFHSLEDTIVKRHINGNVIEGVANPLPLKYCGHDLTHDPELLESFVQSN 330 Query: 285 FQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 ++ + + V+ P ++A N RSRSAKLRA ++ Sbjct: 331 WRQLHRHVIQPDATEIARNSRSRSAKLRAAIKI 363 >gi|302788300|ref|XP_002975919.1| hypothetical protein SELMODRAFT_175313 [Selaginella moellendorffii] gi|300156195|gb|EFJ22824.1| hypothetical protein SELMODRAFT_175313 [Selaginella moellendorffii] Length = 373 Score = 312 bits (801), Expect = 4e-83, Method: Composition-based stats. Identities = 104/315 (33%), Positives = 158/315 (50%), Gaps = 26/315 (8%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCGQ 75 H PVL+ + + K LD T GAGG++ + + + +D DP A+ + Sbjct: 65 PHTPVLVRQFLEHFEGRSVKTFLDCTVGAGGHAFEIIQAHPELETFVGMDVDPCALKLAR 124 Query: 76 ETMRDYKE---QFSLFQATFSQLQD-------YVPDKGVDGVVFDLGVSSMQIDCGDRGF 125 + + D + LF A F ++ + ++G DG++ DLG+SSMQ+D +RGF Sbjct: 125 QRLSDLSGSMAKVDLFHANFKNMKKDLKERNPELLERGFDGILLDLGLSSMQVDAPERGF 184 Query: 126 SFQKSGPLDMRMSCS---GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 S+ GPLDMRM S G++A + N + ++ RIL GEE + +A IV R + Sbjct: 185 SYYLDGPLDMRMDSSDVLGLTAEAICNNWSAAEIGRILREYGEEMRWKFLASRIVDARLN 244 Query: 183 APFQTTQDLSSLIQ-KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 +TT+DL+S++ + HPA R+FQALRI VN+E++ L + A L Sbjct: 245 GGIKTTKDLASVVGGRFTSGRFKRARHPAARTFQALRIAVNDELKSLRSAIGHASSCLAP 304 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 GG L V+SFHSLEDR+VK F S + + F +T + ++ Sbjct: 305 GGRLAVISFHSLEDRIVKYQFKELS---------LVFDKADLAFMLLTTSPITADAAEIE 355 Query: 302 FNRRSRSAKLRAGMR 316 N R RSAK+R R Sbjct: 356 KNSRCRSAKMRVIQR 370 >gi|298346700|ref|YP_003719387.1| S-adenosyl-methyltransferase [Mobiluncus curtisii ATCC 43063] gi|304389591|ref|ZP_07371553.1| S-adenosyl-methyltransferase MraW [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|298236761|gb|ADI67893.1| S-adenosyl-methyltransferase [Mobiluncus curtisii ATCC 43063] gi|304327144|gb|EFL94380.1| S-adenosyl-methyltransferase MraW [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 379 Score = 312 bits (801), Expect = 4e-83, Method: Composition-based stats. Identities = 118/357 (33%), Positives = 182/357 (50%), Gaps = 36/357 (10%) Query: 20 HVPVLLEKVIALLNPA--------------------PGKVILDATFGAGGYSRSFCKMGS 59 H PVL LL PA G V++DAT G GG+S + Sbjct: 8 HQPVLAAVCADLLAPALTPTSEAVTPLSSTADFHNVQGPVLVDATLGMGGHSAYLLESHP 67 Query: 60 --NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVS 114 +I +DRDP A + D+ + S+ T+ +L D + G VDG++ DLGVS Sbjct: 68 QLRIIGIDRDPQARDLAATRLSDFANRLSIVGTTYGELDDVLAQHGLSQVDGILADLGVS 127 Query: 115 SMQIDCGDRGFSFQK-SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRI 172 S+Q+D +RGF++ PLDMRM+ S G +A+D +N A V+++ +L GEEK + + Sbjct: 128 SLQLDEAERGFAYAHPEAPLDMRMNQSSGFTAADFLNLAEVEEIAAVLHTYGEEKFSWPL 187 Query: 173 AHAIVKRRQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQG 231 A AIVK RQ+ P Q + L +I+ T+ ++ +PA R+FQALR+ VN+E+ +L + Sbjct: 188 AKAIVKARQNQPLQVSGQLVQIIRDTIPAPARRTGGNPAKRTFQALRVAVNDELGDLERF 247 Query: 232 LRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKK 291 L A +++ GG ++V S+ SLEDRLVK+ FA+ + + +T Sbjct: 248 LTKALASVRVGGRIVVESYQSLEDRLVKRAFAAGIHPAAPKGLPVLPEQAQPWLRDLTHG 307 Query: 292 VVVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDDSFVHLP--------RLPTLSQFR 340 + + +VA N R+ S +LRA +T E E + + R PTL + R Sbjct: 308 SRLADESEVAQNPRAASLRLRAVEKTREPHPETRAGNLVRTKPKPAEKRFPTLMKLR 364 >gi|295839424|ref|ZP_06826357.1| S-adenosyl-methyltransferase [Streptomyces sp. SPB74] gi|295827469|gb|EFG65411.1| S-adenosyl-methyltransferase [Streptomyces sp. SPB74] Length = 312 Score = 312 bits (800), Expect = 5e-83, Method: Composition-based stats. Identities = 109/289 (37%), Positives = 166/289 (57%), Gaps = 10/289 (3%) Query: 22 PVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQE 76 PV+L + + LL PA PG V++D T G GG+S + ++ALDRD A+ E Sbjct: 2 PVMLRRCLDLLGPALAEPGAVVVDCTLGLGGHSEALLSTFPAARLVALDRDKEALRLAGE 61 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + E+ L A + +L D + G V GV+FDLGVSSMQ+D RGF++ + PL Sbjct: 62 RLAPFGERALLAHAVYDELPDVLERLGIPRVQGVLFDLGVSSMQLDEAGRGFAYAQDAPL 121 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S G+SA++V+N +L RIL GEEKQA RI A+V+ R+ PF + L Sbjct: 122 DMRMDQSAGMSAAEVLNTYPPGELVRILRTYGEEKQARRIVSAVVREREKEPFTRSARLV 181 Query: 193 SLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 LI++ + +K +PA R+FQALRI VN E+ L + + +A +L GG + V+++H Sbjct: 182 ELIREALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVNSLAVGGRIAVLAYH 241 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300 SLEDRLVK+ ++ + + + + +T+ +P +E+V Sbjct: 242 SLEDRLVKQVLSTGATGTAPPGLPVVPERYQPRLKLLTRGAELPAEEEV 290 >gi|289640760|ref|ZP_06472931.1| S-adenosyl-methyltransferase MraW [Frankia symbiont of Datisca glomerata] gi|289509336|gb|EFD30264.1| S-adenosyl-methyltransferase MraW [Frankia symbiont of Datisca glomerata] Length = 359 Score = 312 bits (800), Expect = 5e-83, Method: Composition-based stats. Identities = 125/315 (39%), Positives = 186/315 (59%), Gaps = 10/315 (3%) Query: 18 GDHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVS 72 H PVL ++V+ALL P P V++DAT G G++ + + +I LDRDP A+ Sbjct: 21 ATHTPVLSDRVVALLAPALLRPEAVLVDATVGLAGHASALLDACPTARLIGLDRDPQALE 80 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK 129 + + D ++ +L A + QL + G V GV+FDLGVSS+Q+D +RGFS+ + Sbjct: 81 HSRARLADRADRATLVHAVYDQLPTVLDALGLTEVHGVLFDLGVSSLQLDSDERGFSYSR 140 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM G +A+DVVN + +LTRIL GEE+ A RIA A+V R PF ++ Sbjct: 141 DAPLDMRMDPGRGRTAADVVNTYDADELTRILRHYGEERFARRIASAVVAERAREPFVSS 200 Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 L+ L+++T+ + + N +PA R+FQALRI VN E+E LA+ L +A AL GG L+V Sbjct: 201 ARLADLVRRTIPAATRRNGGNPAKRTFQALRIEVNGELEALARALPAALDALAVGGRLVV 260 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +++HSLEDR+VK+ FA+R + + + +T+ P+ ++VA N R+ Sbjct: 261 LAYHSLEDRMVKRAFAARVRPDVPPDLPVIPPDAAPTMRWLTRGGETPSADEVAANPRAS 320 Query: 308 SAKLRAGMRTVERSI 322 +AKLRA R S Sbjct: 321 AAKLRAVERIAPPSG 335 >gi|118782145|ref|XP_312082.3| AGAP002831-PA [Anopheles gambiae str. PEST] gi|116129429|gb|EAA07716.4| AGAP002831-PA [Anopheles gambiae str. PEST] Length = 384 Score = 312 bits (800), Expect = 5e-83, Method: Composition-based stats. Identities = 122/339 (35%), Positives = 176/339 (51%), Gaps = 42/339 (12%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77 H V+ + + P +V +D TFGAGG++R+ + GS V+ALDRDP A E Sbjct: 44 HRAVMATETVKFFEPQRDQVFIDMTFGAGGHTRALLEAAPGSTVVALDRDPLAHRLACEM 103 Query: 78 MRDYKEQFSLFQATFSQLQDYVP-------DKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + FS+L + + DGV+FD G SSMQ D RGFS Sbjct: 104 AAQFPGRIVPLLGRFSELPALLRTVEGLDRQRHFDGVLFDFGCSSMQFDEAARGFSISHD 163 Query: 131 GPLDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APF 185 GPLDMRM +SA++V+ + DL RIL + GEEKQA +IA AIV R + Sbjct: 164 GPLDMRMDRDRCPEQLSAAEVLARIQEPDLVRILKVYGEEKQAKKIARAIVNARFTVKRI 223 Query: 186 QTTQDLSSLIQKTVYFSKNNRI---------------HPATRSFQALRIFVNNEIEELAQ 230 +TT +L++++ + ++ H AT++FQALRIFVNNE+ E+ Sbjct: 224 ETTAELANIVAHCLSQGESAGGQGTYDFRQDKLRRPAHVATKTFQALRIFVNNELNEINY 283 Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH--------- 281 G+ A+ L+ GG L+ ++FHSLED +VK+ +A R + +H Sbjct: 284 GMVLAKHLLRTGGKLVTIAFHSLEDTIVKRHLTGHVVDDVASRVPLQYVSHTLAHETEAM 343 Query: 282 ----PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 ++ + K V+VPT E+VA N RSRSAKLRA +R Sbjct: 344 QEMMKPHWKQMHKHVMVPTDEEVADNPRSRSAKLRAAVR 382 >gi|71082740|ref|YP_265459.1| S-adenosyl-methyltransferase [Candidatus Pelagibacter ubique HTCC1062] gi|91762838|ref|ZP_01264803.1| S-adenosyl-methyltransferase [Candidatus Pelagibacter ubique HTCC1002] gi|88909208|sp|Q4FPN5|RSMH_PELUB RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|71061853|gb|AAZ20856.1| S-adenosyl-methyltransferase [Candidatus Pelagibacter ubique HTCC1062] gi|91718640|gb|EAS85290.1| S-adenosyl-methyltransferase [Candidatus Pelagibacter ubique HTCC1002] Length = 336 Score = 312 bits (800), Expect = 5e-83, Method: Composition-based stats. Identities = 126/336 (37%), Positives = 190/336 (56%), Gaps = 8/336 (2%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRD 67 M + I + +H PVLL ++I+++ P G +D TFG GGY++ + VIALDRD Sbjct: 1 MIATIIPDVRNHYPVLLSEIISIITPQYGGTFIDCTFGQGGYTKRILNFPETKVIALDRD 60 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDY-VPDKGVDGVVFDLGVSSMQIDCGDRGFS 126 + QE ++++ FSQL + + + + V+FDLG S QI +G S Sbjct: 61 SESSIKAQELQNSFEDRLLFKNIKFSQLNNLKLKHENIKAVIFDLGYSLNQIKDPKKGLS 120 Query: 127 FQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 F G L+M+M + SA + +NQ + K+LT+I G+E + RIAH IV+ R Sbjct: 121 FDSIGELNMKMGINEFSAKEAINQLDEKELTKIFKYFGDEADSKRIAHNIVEDRSKREI- 179 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 TT++L +I+ + +N + H AT+ FQALRIFVN EI EL GL +A K +K G++ Sbjct: 180 TTEELVRIIESS-KRKRNYKTHSATKIFQALRIFVNKEISELIYGLINAAKVVKKDGVIA 238 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 VV+FHSLED++VK FF S S RHM + +F+S+ KK +VP+ +++ N S Sbjct: 239 VVTFHSLEDKIVKYFFKSLSENKSISRHMPKTEEKLNLFKSVIKKPIVPSDKEIRENPPS 298 Query: 307 RSAKLRAGMRTVE----RSIEDDSFVHLPRLPTLSQ 338 RSAKLR ++ + + D F HL + LS+ Sbjct: 299 RSAKLRYVIKKEDFFDFETDILDKFKHLIDIENLSK 334 >gi|319786245|ref|YP_004145720.1| S-adenosyl-methyltransferase MraW [Pseudoxanthomonas suwonensis 11-1] gi|317464757|gb|ADV26489.1| S-adenosyl-methyltransferase MraW [Pseudoxanthomonas suwonensis 11-1] Length = 329 Score = 312 bits (800), Expect = 5e-83, Method: Composition-based stats. Identities = 120/317 (37%), Positives = 182/317 (57%), Gaps = 7/317 (2%) Query: 4 KSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSN 60 ++ + A T H+PVL +V+ L P LD TFG GG++R + G Sbjct: 7 RTAQPGHPADPSTPAAHLPVLFAEVLDGLRVVPEGRYLDGTFGRGGHARGVLERLGPGGR 66 Query: 61 VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDC 120 ++ +D+DP A++ + + S+ + +F+ + + + +DG++ DLGVSS Q+D Sbjct: 67 LLLMDKDPEAIAVAEAGFGS-DPRVSIRRGSFTGMAHWDEARDLDGILLDLGVSSPQLDV 125 Query: 121 GDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFSF K GPLDMRM SG SA+ + +A+ +++ +L I GEEKQ+ RIA AIV Sbjct: 126 AERGFSFGKDGPLDMRMDPDSGESAAQWLARADEREIADVLWIYGEEKQSRRIARAIVAA 185 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 R P T L++LI V K +R +PATRSFQA+RI +N E+ +L GL +A AL Sbjct: 186 RAQEPLTRTAQLANLIGSVVPRGK-DRSNPATRSFQAIRIHINRELADLEAGLDAALAAL 244 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 + GG L V+SFHSLEDR+VK+F A S A R + ++ V ++ + +E+ Sbjct: 245 RPGGRLAVISFHSLEDRMVKQFIARHSKAPPANRRLPEASVFVPVLAAL-GGAIRAGEEE 303 Query: 300 VAFNRRSRSAKLRAGMR 316 + N R+RSA LR + Sbjct: 304 LQVNVRARSAVLRVAEK 320 >gi|145588347|ref|YP_001154944.1| S-adenosyl-methyltransferase MraW [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|262824872|sp|A4SV66|RSMH_POLSQ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|145046753|gb|ABP33380.1| S-adenosyl-methyltransferase MraW [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 316 Score = 312 bits (800), Expect = 5e-83, Method: Composition-based stats. Identities = 117/313 (37%), Positives = 187/313 (59%), Gaps = 23/313 (7%) Query: 20 HVPVLLEKVIALL---------NPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRD 67 H PVLL + + L N A V++D TFG GG++++ K + VI+ D+D Sbjct: 5 HRPVLLAEAVTALISGPLIQEKNAAKKIVVIDGTFGRGGHTQALLKSLEMSARVISFDKD 64 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 A+S Q+ +F++ +F+ + Y + VDG++ DLG+SS Q+D RGFSF Sbjct: 65 LDAISVAQQI---QDPRFTIVHDSFAHMDQYAQAESVDGILLDLGISSPQVDEAHRGFSF 121 Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA--P 184 ++ GPLDMRM+ G++A++ + QA +++TR++ GEE+ A +IA AIV +R+ P Sbjct: 122 RREGPLDMRMNTDQGLTAAEWLEQAPQEEITRVIKTYGEERFAFQIAKAIVAKREEGLSP 181 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 +TT +L+SL+ V ++ PATR+FQALRIF+N E+E+L GL++A K LK G Sbjct: 182 -KTTTELASLVASVV-RTREAGQDPATRTFQALRIFINRELEDLELGLKAALKLLKPGAR 239 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHP-AVFQSITKKVVVPTQEDVAFN 303 L V+SFHSLEDR+VK+FF + + + + P + + I + V P+ +++ N Sbjct: 240 LAVISFHSLEDRIVKQFFQAHAKVEIPRGLPVREKDLPQSALEIIGR--VKPSDLEISEN 297 Query: 304 RRSRSAKLRAGMR 316 R+RSA +R + Sbjct: 298 PRARSAIMRVAEK 310 >gi|258546144|ref|ZP_05706378.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Cardiobacterium hominis ATCC 15826] gi|258518569|gb|EEV87428.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Cardiobacterium hominis ATCC 15826] Length = 305 Score = 312 bits (800), Expect = 5e-83, Method: Composition-based stats. Identities = 114/311 (36%), Positives = 167/311 (53%), Gaps = 16/311 (5%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSC 73 + HV VLL + + L V LD TFG GG+SR+ + ALDRDP A Sbjct: 1 MSAHVTVLLHEAVQALAIRADGVYLDGTFGRGGHSRAMLAALGRAGRLYALDRDPQAAEA 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 +F + FS+++ D G +DG++ DLGVSS Q+D RGFSF K Sbjct: 61 A---AGIDDPRFHFARCPFSRMETAFADVGAASLDGILLDLGVSSPQLDQAARGFSFGKE 117 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQA--SRIAHAIVKRRQSAPFQT 187 GPLDMRM SGI+A+D + + L R++ G E RIA A++ R +T Sbjct: 118 GPLDMRMDNESGITAADWLAATDEATLARVIRDWGGEPHTVARRIARAVIAAR--GKLRT 175 Query: 188 TQDLSSLIQKTVYFSKNN-RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T DL++++ V HPAT++FQA+RI VN+E+ E+ +GL +A + LK+GG+L Sbjct: 176 TLDLAAVVADAVPRKLYKAGFHPATQTFQAIRIAVNDEVGEIERGLAAATRLLKSGGVLA 235 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V++FH LED LVK+F + G + + + + + V P+ +VA N RS Sbjct: 236 VITFHGLEDALVKRFIRAHEGAPLPAEIPSAHDRVNPLLRLVPP-AVKPSAREVADNPRS 294 Query: 307 RSAKLRAGMRT 317 RSA+LR ++ Sbjct: 295 RSARLRKAVKI 305 >gi|300858822|ref|YP_003783805.1| S-adenosyl-methyltransferase [Corynebacterium pseudotuberculosis FRC41] gi|300686276|gb|ADK29198.1| S-adenosyl-methyltransferase [Corynebacterium pseudotuberculosis FRC41] gi|302206527|gb|ADL10869.1| S-adenosyl-methyltransferase MraW [Corynebacterium pseudotuberculosis C231] gi|302331082|gb|ADL21276.1| S-adenosyl-methyltransferase MraW [Corynebacterium pseudotuberculosis 1002] gi|308276769|gb|ADO26668.1| S-adenosyl-methyltransferase MraW [Corynebacterium pseudotuberculosis I19] Length = 351 Score = 312 bits (800), Expect = 6e-83, Method: Composition-based stats. Identities = 115/331 (34%), Positives = 174/331 (52%), Gaps = 23/331 (6%) Query: 20 HVPVLLEKVIALLN---PAPG--KVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVS 72 HVPVL E++ L++ G VILD T GAGG+S F + VI LDRD +++ Sbjct: 19 HVPVLRERMAELISAPVIKMGTSAVILDGTLGAGGHSAFFLESFPEACVIGLDRDLHSLN 78 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDK--------------GVDGVVFDLGVSSMQI 118 +E + Y ++F F + G+ G +FDLGVSSMQ+ Sbjct: 79 NARERLSIYGDRFLGIHTRFDHFLPKLQQHAEAGDEIALKALRHGISGALFDLGVSSMQL 138 Query: 119 DCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177 D +RGF+++ PLDMRM S GI+A+D++N + DL RIL + GEE+ A +IA A+V Sbjct: 139 DQAERGFAYRVDAPLDMRMDDSKGITAADILNTYSHGDLARILKVYGEERFAGKIASAVV 198 Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236 K R+ APF + L L+ T+ + + HPA R+FQALRI VN E+E + L Sbjct: 199 KEREKAPFTHSARLVELLYATIPAATRRTGGHPAKRTFQALRIEVNKELESIENVLPVVT 258 Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296 L GG + +S+ SLED++VK++F S + A F+ +T+ Sbjct: 259 GCLAKGGRAVFMSYQSLEDKIVKRYFVDISTSKSPPGLPMDLPGMEAGFKVVTRGAEKAN 318 Query: 297 QEDVAFNRRSRSAKLRAGMRTVERSIEDDSF 327 ++++A N R+ S ++RA E + D+ Sbjct: 319 EQEIAENPRAASVRVRAIESLKESTTADEHL 349 >gi|224082310|ref|XP_002306643.1| predicted protein [Populus trichocarpa] gi|222856092|gb|EEE93639.1| predicted protein [Populus trichocarpa] Length = 435 Score = 312 bits (799), Expect = 6e-83, Method: Composition-based stats. Identities = 110/349 (31%), Positives = 166/349 (47%), Gaps = 45/349 (12%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAV 71 H HVPV+L +V+ + + P + +D T GA G+S + K + I +D DP A Sbjct: 87 HETESHVPVMLGEVVDVFSSLPLRSFIDCTLGAAGHSSAIIKGHPELECYIGMDVDPVAH 146 Query: 72 SCGQETMRDYK-------------EQFSLFQATFSQLQD--YVPDKGVDGVVFDLGVSSM 116 + + + + F ++ ++ D + GVDG++ DLG+SSM Sbjct: 147 AKARAHIDALLQSTRSSLKPHLLFKNFKYIKSVVGEIDDDCKLLSSGVDGILMDLGMSSM 206 Query: 117 QIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175 Q++ RGFS +GPLDMRM + + A D++N ++ RIL GEE + Sbjct: 207 QVNNPQRGFSVLANGPLDMRMDPRASVKAKDILNYWPDDEVGRILREYGEESNWRWLQKK 266 Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYFSKNNR---IHPATRSFQALRIFVNNEIEELAQGL 232 IV+ RQ +T +L LIQ + +K R I ATR FQALRI VN+E+ L + L Sbjct: 267 IVQARQQGGLHSTSELRDLIQGATHGTKGGRQGWIKTATRVFQALRIAVNDELNTLEKSL 326 Query: 233 RSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ------ 286 + + L GG L V+SFHSLEDR+VK+ F ++ A + Sbjct: 327 HACFECLVPGGRLAVISFHSLEDRIVKQTFLKIIESNGGDGDVVEEEAGKRDLRKMRNDI 386 Query: 287 -----------------SITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318 +TK+ + P++E+ NRRSRSAKLR + Sbjct: 387 DAKETWIRQMVQGQNGTILTKRPITPSEEEERLNRRSRSAKLRVIEKIR 435 >gi|227543126|ref|ZP_03973175.1| S-adenosyl-methyltransferase MraW [Corynebacterium glucuronolyticum ATCC 51866] gi|227181114|gb|EEI62086.1| S-adenosyl-methyltransferase MraW [Corynebacterium glucuronolyticum ATCC 51866] Length = 354 Score = 312 bits (799), Expect = 7e-83, Method: Composition-based stats. Identities = 103/320 (32%), Positives = 165/320 (51%), Gaps = 20/320 (6%) Query: 20 HVPVLLEKVIALLN-----PAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVS 72 HVPVL ++++ LL + +D T GAGG++ VI +DRD A+ Sbjct: 31 HVPVLRDRMVELLRRGIAVDGATGIAVDGTLGAGGHTEHLLATDPNARVIGVDRDAQALK 90 Query: 73 CGQETMRDYKEQFSLFQATFSQ-----------LQDYVPDKGVDGVVFDLGVSSMQIDCG 121 + + ++F F + L G+ G +FDLGVSSMQ+D Sbjct: 91 DATARLAPFGDRFVGLNVRFDEWMEAASCSSHPLCQEAAADGISGALFDLGVSSMQLDQE 150 Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGF+++ PLDMRM S GI+A+DV+N + DL R+L GEEK A +IA A+++ R Sbjct: 151 ERGFAYKIDAPLDMRMDPSRGITAADVLNTYSHGDLARVLKTYGEEKFAGKIASAVIRER 210 Query: 181 QSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 + PF + L L+ T+ ++ + HPA R+FQALR+ VN E+ L Q + AL Sbjct: 211 EKEPFTRSGRLVELLYDTIPAPARRHGGHPAKRTFQALRVEVNQELRALEQVIPVTADAL 270 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 GG+++ +S+ SLED++VKK A + + F +T+ ++++ Sbjct: 271 HVGGVMVFMSYQSLEDKIVKKALARLTTSTNPPGLPVDLPGTEPHFALVTRGSEKASKKE 330 Query: 300 VAFNRRSRSAKLRAGMRTVE 319 + N R+ S ++RA R + Sbjct: 331 IDQNPRAASVRVRAAQRVLN 350 >gi|118618804|ref|YP_907136.1| S-adenosyl-methyltransferase MraW [Mycobacterium ulcerans Agy99] gi|118570914|gb|ABL05665.1| methyltransferase [Mycobacterium ulcerans Agy99] Length = 395 Score = 312 bits (799), Expect = 7e-83, Method: Composition-based stats. Identities = 115/316 (36%), Positives = 172/316 (54%), Gaps = 18/316 (5%) Query: 19 DHVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDP 68 HVPVL ++ + LL PA V++DAT GAGG++ F +I LDRDP Sbjct: 64 HHVPVLAQRCVELLRPALTRHHADGSEAVLVDATIGAGGHAERFLTELPGLRLIGLDRDP 123 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSSMQIDCGD 122 A+ + + + ++ +L + L + + G +DG +FDLGVSSMQ+D + Sbjct: 124 SALEIVRTRLARFTDRVTLVHTRYDGLASALTELGYGAAQSIDGALFDLGVSSMQLDQAE 183 Query: 123 RGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGF++ K PLDMRM+ S +S +D++N + L IL GEE+ A RIA I++RR Sbjct: 184 RGFAYSKDAPLDMRMNPQSALSGADIINTYDEAALADILHRYGEERFARRIAARIIRRRA 243 Query: 182 SAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 PF TT +L +L+ + + + + HPA R+FQALRI VN+E+ L + +A AL Sbjct: 244 DRPFTTTAELVALLYEAIPAAARRTGGHPAKRTFQALRIAVNDELGSLRSAVPAAMDALA 303 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300 GG ++V+++ SLEDR+VK+ FA V + H F+S+T +V Sbjct: 304 VGGRIVVMAYQSLEDRIVKRVFADAVASRTPVDLPVELPGHGPRFRSLTHGAERADAAEV 363 Query: 301 AFNRRSRSAKLRAGMR 316 N RS +LRA R Sbjct: 364 EHNPRSAPVRLRALQR 379 >gi|225429894|ref|XP_002283626.1| PREDICTED: similar to Os02g0137600 [Vitis vinifera] Length = 444 Score = 311 bits (798), Expect = 8e-83, Method: Composition-based stats. Identities = 108/351 (30%), Positives = 165/351 (47%), Gaps = 51/351 (14%) Query: 17 IGDHVPVLLEKVIA-------LLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDR 66 HVPV+L +V+ + +P + +D T GA G+S + + + + +D Sbjct: 93 TATHVPVMLGEVLEVFSSFSSSSSSSPLRSFVDCTLGAAGHSSAIIQAHPELELYVGMDV 152 Query: 67 DPFAVSCGQETMRD------------YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 DP A Q +R + F ++ ++ + + GVDG++ DLG+S Sbjct: 153 DPIAHEKAQARIRSLCGDSSHLKAHTFMRNFKNIKSVLREVDEELLSSGVDGILMDLGMS 212 Query: 115 SMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIA 173 SMQ++ +RGFS +GPLDMRM ++A D++N ++ RIL GEE + Sbjct: 213 SMQVNNAERGFSVLANGPLDMRMDPQASLTAEDILNSWPDTEVGRILREYGEESNWRSLQ 272 Query: 174 HAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNR---IHPATRSFQALRIFVNNEIEELAQ 230 + IVK R +T +L LI+KT ++ R I ATR FQALRI VN+E++ L Sbjct: 273 NKIVKARLFGGLHSTGELVDLIRKTTPRTRGGRQGWIKTATRVFQALRIAVNDELKTLED 332 Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF-------------------------ASR 265 L + + L GG L V+SFHSLEDR+VK+ F + Sbjct: 333 SLYACFECLTPGGRLAVISFHSLEDRIVKQTFLDIINSNGEDESGEGGGQEGCGKDLRNI 392 Query: 266 SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 I +TK+ + P++E+ NRRSRSAKLR + Sbjct: 393 RNDNDEKEAWIKQMVQGWNGTILTKRPITPSEEEERLNRRSRSAKLRVIQK 443 >gi|78778559|ref|YP_396671.1| methyltransferase [Prochlorococcus marinus str. MIT 9312] gi|123554751|sp|Q31D10|RSMH_PROM9 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|78712058|gb|ABB49235.1| methyltransferase [Prochlorococcus marinus str. MIT 9312] Length = 300 Score = 311 bits (798), Expect = 8e-83, Method: Composition-based stats. Identities = 105/316 (33%), Positives = 169/316 (53%), Gaps = 30/316 (9%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLN----PAPGKV-ILDATFGAGGYSRSFCKMGSNV--I 62 + + +H V+ ++++A L ++ +DAT G GG+S + S++ I Sbjct: 3 TDLSDSSFFNHKSVMTDEILASLEHYPLIHNNQLKGIDATLGGGGHSYHLLRKYSDLHII 62 Query: 63 ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGD 122 LD+DPFA + + ++K + + A F+ + P + V V+ DLGV+S QID Sbjct: 63 GLDQDPFARKSASKKLDEFKNRIDIRAANFADFE---PKEKVSFVIADLGVNSNQIDDPK 119 Query: 123 RGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI-VKRR 180 RGFSFQK GPLDMRM+ + A ++ KDL ++ G+E+ + +IA I + + Sbjct: 120 RGFSFQKDGPLDMRMNPFLEVDAEKLIETLQEKDLANLIYKYGDERLSRKIARKIKMDLK 179 Query: 181 QSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 + + T++L+ I + +IHPATR+FQALRI VN EIE L + L+ L Sbjct: 180 VNGKYSGTKELAYSIAGCFPPKQRYKKIHPATRTFQALRIAVNKEIEVLEKFLQIVPDWL 239 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 GG++ ++SFHSLEDRLVK F + +++TKK + P++++ Sbjct: 240 LPGGIISIISFHSLEDRLVKSSFKND-----------------QRLKNLTKKPITPSEQE 282 Query: 300 VAFNRRSRSAKLRAGM 315 V N+R+RS KLR Sbjct: 283 VEINKRARSGKLRVAQ 298 >gi|227497582|ref|ZP_03927805.1| S-adenosyl-methyltransferase [Actinomyces urogenitalis DSM 15434] gi|226832951|gb|EEH65334.1| S-adenosyl-methyltransferase [Actinomyces urogenitalis DSM 15434] Length = 363 Score = 311 bits (798), Expect = 9e-83, Method: Composition-based stats. Identities = 113/338 (33%), Positives = 182/338 (53%), Gaps = 18/338 (5%) Query: 20 HVPVLLEKVIALLNPA-----PGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVS 72 H PVLL + + LL PA V++D T G GG++ + + I +DRD A++ Sbjct: 24 HTPVLLRRCLDLLAPAIEEAPAEPVMIDCTLGMGGHTEGALRRFPRLRVIGIDRDSQAIA 83 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVP------DKGVDGVVFDLGVSSMQIDCGDRGFS 126 + + ++F+ +AT+ +++ + VD V+ DLGVSS+Q+D +RGFS Sbjct: 84 LASARLAPFGDRFTAVRATYDEVEAVAHRFSQDGEGTVDAVLMDLGVSSLQLDDVERGFS 143 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR-QSAP 184 + + PLDMRM S G++A ++++ A +L RIL GEE+ A RI AIV+RR P Sbjct: 144 YARPAPLDMRMDQSQGMTAQELLDGAEPGELVRILRAYGEERFAPRIVEAIVRRRSAGHP 203 Query: 185 FQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 +TQ+L+ L+++ V + + HPA R+FQALRI VN E++ L + + A +L+ GG Sbjct: 204 VSSTQELAELVRQAVPAATRRTGGHPAKRTFQALRIAVNAELDVLERAVPRALNSLRVGG 263 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 L+V S+ SLEDR+VK+ A+ + + A Q++T + ++A N Sbjct: 264 RLVVESYQSLEDRIVKQAIAAGTRASVPDDLPFVPEGAGAYLQALTHGAERADEAELAAN 323 Query: 304 RRSRSAKLRAGMRTVERSIEDDSFVHLPRLPTLSQFRG 341 RS +LRA +R R + L T + +G Sbjct: 324 PRSAPVRLRAAVRL--RPADQAPAAEPKPLTTTRRRQG 359 >gi|333027784|ref|ZP_08455848.1| putative S-adenosyl-methyltransferase [Streptomyces sp. Tu6071] gi|332747636|gb|EGJ78077.1| putative S-adenosyl-methyltransferase [Streptomyces sp. Tu6071] Length = 312 Score = 311 bits (798), Expect = 9e-83, Method: Composition-based stats. Identities = 108/289 (37%), Positives = 166/289 (57%), Gaps = 10/289 (3%) Query: 22 PVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQE 76 PV+L + + LL PA PG V++D T G GG+S + ++ALDRD A+ E Sbjct: 2 PVMLRRCLDLLGPALAEPGAVVVDCTLGLGGHSEALLSTFPAARLVALDRDKEALRLAGE 61 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + E+ L A + +L D + G V G++FDLGVSSMQ+D DRGF++ + PL Sbjct: 62 RLAPFGERAMLAHAVYDELPDVLDRLGIPRVQGILFDLGVSSMQLDEADRGFAYAQDAPL 121 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + G+SA++V+N +L RIL GEEKQA RI A+V+ R+ PF + L Sbjct: 122 DMRMDQTAGLSAAEVLNTYPPGELVRILRTYGEEKQARRIVSAVVREREKEPFARSARLV 181 Query: 193 SLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 LI++ + +K +PA R+FQALRI VN E+ L + + +A L GG + V+++H Sbjct: 182 ELIREALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVNTLAVGGRIAVLAYH 241 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300 SLEDRLVK+ ++ + + + + +T+ +P +E+V Sbjct: 242 SLEDRLVKQVLSTGATSTAPPGLPVVPERYQPRLKLLTRGAELPAEEEV 290 >gi|262341157|ref|YP_003284012.1| S-adenosyl-methyltransferase MraW [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272494|gb|ACY40402.1| S-adenosyl-methyltransferase MraW [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 301 Score = 311 bits (798), Expect = 1e-82, Method: Composition-based stats. Identities = 109/312 (34%), Positives = 160/312 (51%), Gaps = 20/312 (6%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPF 69 H H PVLL++ I L + +DATFG GG+S + K + +IALD+D Sbjct: 3 FQHFYYHHEPVLLKESIENLITDKNGIYVDATFGGGGHSYAILKKLNKRGILIALDQDKE 62 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFS 126 ++ ++F LF F ++D + V G++ DLG+SS+QID RGFS Sbjct: 63 SIKRNFIK----DKRFHLFHNNFIHIRDILNQNHIEKVSGILVDLGLSSLQIDNPTRGFS 118 Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 Q + LDMRM+ S SA +V+N+ + K+L I GE K A +I I+K+R Sbjct: 119 NQWNCTLDMRMNQESSYSAQNVINECSKKELFHIFYEYGEFKNAKKIVEKILKKRFQKNI 178 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 T DLS+L ++ S R R FQ++RI VNNEI L L + K + GG + Sbjct: 179 TNTLDLSNLF--FIHGSFKKRKRFLARLFQSIRIEVNNEINILKDFLLESSKIILPGGRI 236 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V+S+HS+EDR+ K F + N F+ I KKV+ P+ +++ N R Sbjct: 237 AVISYHSIEDRITKYFLKEE-------FLIKKMNFKTLPFRMIHKKVIKPSFQEIIRNPR 289 Query: 306 SRSAKLRAGMRT 317 SRSA+LR + Sbjct: 290 SRSARLRIAEKV 301 >gi|297623827|ref|YP_003705261.1| S-adenosyl-methyltransferase MraW [Truepera radiovictrix DSM 17093] gi|297165007|gb|ADI14718.1| S-adenosyl-methyltransferase MraW [Truepera radiovictrix DSM 17093] Length = 339 Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats. Identities = 116/291 (39%), Positives = 165/291 (56%), Gaps = 22/291 (7%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQE 76 H PV+L + +A L P LD TFGAGG++R+ + G NV+ALDRDP E Sbjct: 7 AAPHAPVMLAECLAHLAVKPQAWYLDGTFGAGGHTRALLEAGGNVLALDRDPSVTRFLPE 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + F L + GV GV+ DLGVSSMQ+D +RGFSF+ GPL Sbjct: 67 D-ALASGRLRFVEGNFDALDRHAAAAGVGPLAGVLLDLGVSSMQLDEAERGFSFRHPGPL 125 Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 DMRM +G+ A+D+VN A+ ++L ++ GEE+ + RIA IV+ R AP TT +L+ Sbjct: 126 DMRMGPTGLCAADLVNSASQEELASVIFRYGEERYSRRIARRIVEARAKAPITTTDELAE 185 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 +I + R HPA R+FQALR+ VN+E+ L + L +AE+AL GG L+V+++HSL Sbjct: 186 IIARAYPPGPR-RDHPARRTFQALRVAVNDELGALERALAAAERALAPGGRLVVLTYHSL 244 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 EDR+VK+ F S A+ +TKK + + E+VA N Sbjct: 245 EDRIVKRAFKSS-----------------ALLTPLTKKPLTASPEEVAANP 278 >gi|256832298|ref|YP_003161025.1| S-adenosyl-methyltransferase MraW [Jonesia denitrificans DSM 20603] gi|256685829|gb|ACV08722.1| S-adenosyl-methyltransferase MraW [Jonesia denitrificans DSM 20603] Length = 334 Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats. Identities = 111/313 (35%), Positives = 176/313 (56%), Gaps = 10/313 (3%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCG 74 H+PVL ++ + L+ PA P + +DAT G GG++R+ + NVI +DRD A++ Sbjct: 14 HIPVLRDRCLELMAPALNSPQALYVDATLGMGGHTRAVLEAFPNVIAIGIDRDAQALALA 73 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQKSG 131 E + + ++F T+ + + + G DG ++ DLGVSS+QID +RGF++ Sbjct: 74 SERLESFGQRFRAVHTTYDNIYRVIHEAGFDGAQAILMDLGVSSLQIDERERGFAYAHDA 133 Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM S ++A+D++N + K L IL GEE+ A RIA AIV+RR+ P++ + + Sbjct: 134 PLDMRMDSSAPLTAADILNTYDEKRLATILKTYGEERFAPRIARAIVRRREERPWERSGE 193 Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L LI++++ + + +PA R+FQALRI VN E++ LA L +A ++L GG L+V S Sbjct: 194 LVDLIRESIPAAARATGGNPAKRTFQALRIEVNEELDVLAHALPAAIESLVIGGRLLVES 253 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 +HSLEDR+ K F I H +++T+ + ++ N RS S Sbjct: 254 YHSLEDRMTKVEFTRGLQSSAPPDLPIEPETHRPYLRALTRGAEKADENELQSNPRSASV 313 Query: 310 KLRAGMRTVERSI 322 +LRA R Sbjct: 314 RLRAIERVRPTPA 326 >gi|311063958|ref|YP_003970683.1| S-adenosyl-methyltransferase [Bifidobacterium bifidum PRL2010] gi|310866277|gb|ADP35646.1| MraW S-adenosyl-methyltransferase [Bifidobacterium bifidum PRL2010] Length = 370 Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats. Identities = 107/307 (34%), Positives = 159/307 (51%), Gaps = 11/307 (3%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 H PVLLE+ ++L+ PA PG + +D T G G++ +F K V+ +DRD A++ Sbjct: 8 HQPVLLEQCVSLVAPALQDPGSIAVDCTLGLAGHTIAFLKAAPQARVLGIDRDAEALAMA 67 Query: 75 QETMRDYK--EQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQK 129 E + ++F A F + D+G+D V DLG+SS+QID DRGFS+ Sbjct: 68 TERIAGEGLSDRFIPVHAAFDAFGQVLDDQGIDRVNAVFMDLGLSSLQIDETDRGFSYAH 127 Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM S ++A V+ + ++L RI GEE+ + +IA IV+RR P T+ Sbjct: 128 DAPLDMRMDVSQPLTAQCVLAEYPERELVRIFRAYGEERFSRQIAREIVRRRAQEPLTTS 187 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ L+ + V + +PA R FQALRI VN E+++LA L L G L+V Sbjct: 188 AQLNRLVDEVVPQAHRPAGNPAKRVFQALRIEVNGELDKLAGTLPQIACRLAPNGRLVVE 247 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 S+HSLED+ VK F + + F +T+ V +++A N RS S Sbjct: 248 SYHSLEDKTVKSFMNEGLRVDAPADMPVIPDDAQPFFAPLTRGAVQAGPDEIAANPRSAS 307 Query: 309 AKLRAGM 315 +LR Sbjct: 308 VRLRGVE 314 >gi|300871667|ref|YP_003786540.1| S-adenosyl-methyltransferase MraW [Brachyspira pilosicoli 95/1000] gi|300689368|gb|ADK32039.1| S-adenosyl-methyltransferase, MraW [Brachyspira pilosicoli 95/1000] Length = 297 Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats. Identities = 100/299 (33%), Positives = 169/299 (56%), Gaps = 16/299 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H PV+L+++++ + P + +DAT G GG++++ + V + +RD + +E ++ Sbjct: 7 HTPVMLKEILSFI-PENANIAVDATLGEGGHTKAMLDLNLEVHSFERDDKILEVAKERLK 65 Query: 80 DYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 DYK +F + T+ ++ + + + VD +++DLGVS +RGFSF+ LDMR Sbjct: 66 DYK-KFHYYNNTYDKMLEELNENVIGNVDFMLYDLGVSMFHFKKANRGFSFKDDVKLDMR 124 Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI- 195 + + SA DV+N + K+L R+ GE AS+IA+ IV R+ +T+++L ++I Sbjct: 125 LGINNKSAYDVINSYSEKELERVFREYGEMHNASKIANIIVNERKKKSIETSKELENIIF 184 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 T + +IHPAT FQA+RI VN+E+ L + + + K LK GG+ ++S+HSLED Sbjct: 185 HHTDKAKRFGKIHPATLVFQAIRIEVNDELNILEKSISNISKILKNGGVAAIMSYHSLED 244 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 R+VK+F + +F+ + KV+ PT E++ N SRSAKLR Sbjct: 245 RIVKRFLKDNEK----------TKNKDGIFKLLNSKVITPTNEEIKLNPASRSAKLRVA 293 >gi|37522496|ref|NP_925873.1| hypothetical protein glr2927 [Gloeobacter violaceus PCC 7421] gi|42559444|sp|Q7NCQ1|RSMH_GLOVI RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|35213497|dbj|BAC90868.1| glr2927 [Gloeobacter violaceus PCC 7421] Length = 314 Score = 310 bits (796), Expect = 1e-82, Method: Composition-based stats. Identities = 103/288 (35%), Positives = 156/288 (54%), Gaps = 27/288 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78 H VLLE+ I L PG + LDAT G GG+S + + S V+ALD+D A++ + + Sbjct: 30 HRSVLLEETIVGLQVHPGGLYLDATVGLGGHSEAILRTESTRVVALDQDEDALAQARLRL 89 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138 + E+ F++ + ++ DG+V DLGVSSMQ+D +RGFS++ PLDMRM Sbjct: 90 APFGERVRFEHINFAEFEP--GEERFDGIVADLGVSSMQLDSPERGFSWRFESPLDMRMD 147 Query: 139 CSGI--SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 G +A+D+VN + + L+ + GEE+ + RIA IV+RR P +TT +L++++ Sbjct: 148 GGGEAETAADLVNTCSAEQLSDLFWRYGEERFSRRIARRIVERR---PLRTTTELAAVVA 204 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 + + IHPATR FQALRI VN E+ L L + L GG L V+SFHSLEDR Sbjct: 205 SAIPTRQP--IHPATRVFQALRIAVNGEVAALETFLERSPDWLVPGGRLAVISFHSLEDR 262 Query: 257 LVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 VK + + + +T+K + + ++ N Sbjct: 263 PVKHRWRAD-----------------PRLEVLTRKTITAGEAEIQSNP 293 >gi|329944591|ref|ZP_08292731.1| S-adenosyl-methyltransferase MraW [Actinomyces sp. oral taxon 170 str. F0386] gi|328530144|gb|EGF57027.1| S-adenosyl-methyltransferase MraW [Actinomyces sp. oral taxon 170 str. F0386] Length = 368 Score = 310 bits (796), Expect = 1e-82, Method: Composition-based stats. Identities = 120/351 (34%), Positives = 179/351 (50%), Gaps = 27/351 (7%) Query: 9 MSSAIHHTI---GDHVPVLLEKVIALLNPA-------------PGKVILDATFGAGGYSR 52 M+S G H PVLL++ + LL PA G V++D T G GG++ Sbjct: 1 MTSPQAQATDAAGRHEPVLLQRCLDLLAPAIERAAEDTSRGSAAGPVMIDCTLGMGGHTE 60 Query: 53 SFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV------ 104 + + V+ +DRDP A++ + + ++F QAT+ + D V Sbjct: 61 AALERFPYLTVVGIDRDPEAITLASARLERFGDRFVAVQATYDAVDRVARDHSVSAEGTV 120 Query: 105 DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGIL 163 D V+ DLGVSS+Q+D RGFS+ + PLDMRM S G +A D++ A+ +LTRIL Sbjct: 121 DAVLMDLGVSSLQLDEASRGFSYARPAPLDMRMDQSSGPTAQDLLESADSAELTRILRTY 180 Query: 164 GEEKQASRIAHAIVKRRQSA-PFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFV 221 GEE+ ASRIA AIV+RR++ P +TQDL+ L+++ V ++ + HPA R+FQALRI V Sbjct: 181 GEERFASRIATAIVRRREAGEPASSTQDLAELVRQAVPAPARRSGGHPAKRTFQALRIAV 240 Query: 222 NNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH 281 N E++ L + + A +L+ GG L+V S+ SLEDR+VK+ + + A Sbjct: 241 NAELDVLERAVPRALNSLRVGGRLVVESYQSLEDRIVKRALNHGATSRAPQGLPVVPEAD 300 Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDDSFVHLPR 332 + IT ++ N RS +LRA R H Sbjct: 301 RPYLELITSGAEKADARELEHNPRSAPVRLRAVARLRPAGQAPAPEEHPSP 351 >gi|319949143|ref|ZP_08023234.1| 16S rRNA m(4)C1402 methyltranserfase [Dietzia cinnamea P4] gi|319437192|gb|EFV92221.1| 16S rRNA m(4)C1402 methyltranserfase [Dietzia cinnamea P4] Length = 340 Score = 310 bits (796), Expect = 1e-82, Method: Composition-based stats. Identities = 108/329 (32%), Positives = 168/329 (51%), Gaps = 22/329 (6%) Query: 16 TIGDHVPVLLEKVIALLNP-----APGK---VILDATFGAGGYSRSFCKMGS--NVIALD 65 T HVPV LE+ I L P A VI+D T G GG+S V+ +D Sbjct: 12 TRSGHVPVFLERTIELFRPVVEAAAEEGRAPVIVDGTLGLGGHSSHLLAEFGELRVLGVD 71 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----------KGVDGVVFDLGVSS 115 RDP A+ + Y+++F+ A F + +DG++ D GVSS Sbjct: 72 RDPEALDMATRRLTAYRDRFTPVHARFDDFNSVIAALPPDARDDAGPAIDGILLDFGVSS 131 Query: 116 MQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAH 174 MQ+D +RGF++ PLDMRM + G +A+D++ + +L RIL + GEE+ A +IA Sbjct: 132 MQLDVAERGFAYSVDAPLDMRMDPTTGPTAADILAEYPRDELARILRVYGEERFARQIAA 191 Query: 175 AIVKRRQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLR 233 AIV+RR + P T+ L L+ T+ ++ HP R FQALRI VN E+E + + Sbjct: 192 AIVRRRDTDPIVTSSQLVELLYDTIPQGARRTGGHPGKRVFQALRIEVNAELEAVENAVP 251 Query: 234 SAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV 293 L+ GG + +++HSLED++VK+ A+R+ + H F+++T+ Sbjct: 252 GYLDLLRLGGRAVFMAYHSLEDKIVKRELATRTASRTPAGLPVELPGHGPEFEAVTRGAE 311 Query: 294 VPTQEDVAFNRRSRSAKLRAGMRTVERSI 322 +QE++ N RS S ++R R R+ Sbjct: 312 KASQEEIDHNPRSASVRVRCVRRIDGRTP 340 >gi|194741008|ref|XP_001952981.1| GF17544 [Drosophila ananassae] gi|190626040|gb|EDV41564.1| GF17544 [Drosophila ananassae] Length = 361 Score = 310 bits (796), Expect = 1e-82, Method: Composition-based stats. Identities = 120/330 (36%), Positives = 175/330 (53%), Gaps = 31/330 (9%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76 HVPVL + I L P PG +D TFGAGG++R + + V ALDRDP A +E Sbjct: 31 PHVPVLCDTAIEHLQPLPGGTYIDMTFGAGGHTRRIFEKCPEAKVYALDRDPVAHQLARE 90 Query: 77 TM--RDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQK 129 YK + FS + + G+ +G++FD G SSMQ D +RGFS K Sbjct: 91 LSQKEKYKGRLIPLLGKFSDIPKLFEEHGLSRNSLNGILFDFGCSSMQFDEAERGFSISK 150 Query: 130 SGPLDMRMS---CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APF 185 GPLDMRM G++A++V+++ DL RIL I GEEK A +IA ++ R++ Sbjct: 151 DGPLDMRMDGGHSGGVTAAEVLSKIEETDLARILRIYGEEKAAKKIARGLIDARKALVQI 210 Query: 186 QTTQDLSSLIQKTVYFSKNNRI-----HPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 +TT+ L+ L++ + H AT++FQALRIFVNNE+ E+ G+ A + L+ Sbjct: 211 ETTKQLADLVEDILSSGPRRDKLQRPSHSATKTFQALRIFVNNELNEINYGMVLANEILR 270 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-------------PAVFQS 287 G L+ ++FHSLED +VK+ A + + H ++ Sbjct: 271 REGRLVTITFHSLEDTIVKRHINGNVVAGAANPLPLKYSGHDIIDDPEMLQSLVQTNWKP 330 Query: 288 ITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 + + V+VP E+VA N RSRSAKLRA ++ Sbjct: 331 LHRHVIVPDAEEVARNSRSRSAKLRAAVKV 360 >gi|304373145|ref|YP_003856354.1| Ribosomal RNA small subunit methyltransferase H [Mycoplasma hyorhinis HUB-1] gi|304309336|gb|ADM21816.1| Ribosomal RNA small subunit methyltransferase H [Mycoplasma hyorhinis HUB-1] Length = 298 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 101/307 (32%), Positives = 153/307 (49%), Gaps = 16/307 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76 DH+PVLL++VI LN + LD T G GG+S K +I D+D A+ +E Sbjct: 2 DHIPVLLDQVIDQLNIKEDGIYLDLTLGRGGHSSQILKKLTSGKLIVFDKDKQAIEQTKE 61 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + F + VDGV+ DLGVSS Q+D +RGFS+ K L Sbjct: 62 KLLKISSNIEFIWSDFKDFDQELKKLQINKVDGVLLDLGVSSPQLDQANRGFSYNKQARL 121 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ SA ++VN+ + + L I G+ A+ IA IVK R P T +L Sbjct: 122 DMRMNQAQSFSAYELVNEYSKEKLVNIFTNYGQVPFANNIAENIVKLR---PITYTTELV 178 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I++++ + +PA FQA+RI VN E+E L L +K LK G L +++FHS Sbjct: 179 DIIKQSLPNFVLRKKNPAKNVFQAIRIEVNQELESLNIFLSKIDKFLKKDGKLAIITFHS 238 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LED++VK +F + + A + K Q+++ N+R++SAKLR Sbjct: 239 LEDKIVKNYFKQLLKQ----NQTLFFETTQAKYLV---KTTWANQKEIDNNKRAKSAKLR 291 Query: 313 AGMRTVE 319 + + Sbjct: 292 VLTKLIN 298 >gi|195107446|ref|XP_001998323.1| GI23693 [Drosophila mojavensis] gi|193914917|gb|EDW13784.1| GI23693 [Drosophila mojavensis] Length = 362 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 124/329 (37%), Positives = 175/329 (53%), Gaps = 31/329 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 HVPVL E I L P PG +D TFGAGG++R V ALDRDP A Q Sbjct: 33 HVPVLCETAIEYLQPKPGGKYIDMTFGAGGHTRKLLDSCPETTVYALDRDPVAHQLAQRM 92 Query: 78 MRD--YKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKS 130 ++ Y+ + FS L + V DG++FD G SSMQ D RGFS Sbjct: 93 SQEQNYEGRLIPMLGKFSDLPQLLQALDVPPRSFDGMLFDFGCSSMQFDEAARGFSIAHD 152 Query: 131 GPLDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQT 187 GPLDMRM C G+SA+DV+ + DL RIL + GEEK A +IA AIV+ R + +T Sbjct: 153 GPLDMRMDCGRGGVSAADVLARIEEADLARILRVYGEEKAAKKIARAIVEARNALQRIET 212 Query: 188 TQDLSSLIQKTVYFSKNNRI-----HPATRSFQALRIFVNNEIEELAQGLRSAEK-ALKA 241 T+ L+ L+ + H AT++FQALRIFVNNE+ E+ G+ A++ L+A Sbjct: 213 TRQLADLVAAVLGEGHRRDKLQRPSHVATKTFQALRIFVNNELNEINYGMVLAQELLLRA 272 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHP-------------AVFQSI 288 G L+ ++FHSLED +VK+ + +A + + H + ++ + Sbjct: 273 QGRLVAITFHSLEDTIVKRHLNGNVIEGVANPLPLKYSGHDLTHDPELMESFVRSNWRQL 332 Query: 289 TKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 + V++P ++A N RSRSAKLRA ++ Sbjct: 333 HRHVILPDASEIARNSRSRSAKLRAAVKI 361 >gi|289209369|ref|YP_003461435.1| S-adenosyl-methyltransferase MraW [Thioalkalivibrio sp. K90mix] gi|288945000|gb|ADC72699.1| S-adenosyl-methyltransferase MraW [Thioalkalivibrio sp. K90mix] Length = 309 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 119/306 (38%), Positives = 166/306 (54%), Gaps = 11/306 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H+PVL + V+ L +D TFG GG+SR+ G +++A+DRDP A + Sbjct: 7 HIPVLRDAVLEGLAVRADGFYVDGTFGRGGHSRAILDRLGAGGSLLAMDRDPEAAAAASS 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYV----PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 D +F FS + D + PD+ DGV DLGVSS Q+D +RGFSFQ GP Sbjct: 67 FADD--PRFVFEPGPFSTMADTLRRRFPDRAPDGVFLDLGVSSPQLDTPERGFSFQHDGP 124 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G SA+D + +A ++ ++ GEE+ + R+A AIV R AP T L Sbjct: 125 LDMRMDPTQGESAADWLARAEQDEIADVIYHYGEERHSRRVARAIVAARADAPITRTAQL 184 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++++ V + + HPATR+FQALRI VN E+EEL Q L + +AL G ++V+SFH Sbjct: 185 AEIVRRAVPGREPGK-HPATRTFQALRIHVNRELEELEQWLETIPEALHTGARMVVISFH 243 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+VK+ R + P K V E+ N R+RSA L Sbjct: 244 SLEDRMVKQALRGPRPDTRLPRGLPVMPETPERPWRPIGKPVRADAEEQRRNPRARSAVL 303 Query: 312 RAGMRT 317 R G RT Sbjct: 304 RVGERT 309 >gi|224282633|ref|ZP_03645955.1| S-adenosyl-methyltransferase [Bifidobacterium bifidum NCIMB 41171] gi|313139792|ref|ZP_07801985.1| S-adenosyl-methyltransferase [Bifidobacterium bifidum NCIMB 41171] gi|313132302|gb|EFR49919.1| S-adenosyl-methyltransferase [Bifidobacterium bifidum NCIMB 41171] Length = 370 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 107/307 (34%), Positives = 159/307 (51%), Gaps = 11/307 (3%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 H PVLLE+ ++L+ PA PG + +D T G G++ +F K V+ +DRD A++ Sbjct: 8 HQPVLLEQCVSLVAPALQDPGSIAVDCTLGLAGHTIAFLKAAPQARVLGIDRDAEALAMA 67 Query: 75 QETMRDYK--EQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQK 129 E + ++F A F + D+G+D V DLG+SS+QID DRGFS+ Sbjct: 68 TERIAGEGLSDRFIPVHAAFDAFGQVLDDQGIDRVNAVFMDLGLSSLQIDETDRGFSYAH 127 Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM S ++A V+ + ++L RI GEE+ + +IA IV+RR P T+ Sbjct: 128 DAPLDMRMDVSQPLTAQRVLAEYPERELVRIFRAYGEERFSRQIAREIVRRRAQEPLTTS 187 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ L+ + V + +PA R FQALRI VN E+++LA L L G L+V Sbjct: 188 AQLNRLVDEVVPQAHRPAGNPAKRVFQALRIEVNGELDKLAGTLPQIACRLAPNGRLVVE 247 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 S+HSLED+ VK F + + F +T+ V +++A N RS S Sbjct: 248 SYHSLEDKTVKSFMNEGLRVDAPADMPVVPDDAQPFFAPLTRGAVQAGPDEIAANPRSAS 307 Query: 309 AKLRAGM 315 +LR Sbjct: 308 VRLRGVE 314 >gi|157364289|ref|YP_001471056.1| S-adenosyl-methyltransferase MraW [Thermotoga lettingae TMO] gi|262825835|sp|A8F758|RSMH_THELT RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|157314893|gb|ABV33992.1| S-adenosyl-methyltransferase MraW [Thermotoga lettingae TMO] Length = 292 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 117/308 (37%), Positives = 168/308 (54%), Gaps = 32/308 (10%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77 HVPV++++V++ + V LD T GAGG+S + + GS VI +D D +S ++ Sbjct: 5 HVPVMVKEVLSYFSNLR-GVFLDCTVGAGGHSEAILENIKGSVVIGIDVDEEILSVAKQR 63 Query: 78 MRDYK--EQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 ++ Y+ + L +AT+ + Q + GV +G++ DLGVS++Q+ G+RGF+F GP Sbjct: 64 LKKYESEGRAKLLKATYVEAQRVLSQLGVKAVNGIIMDLGVSTLQLMKGERGFAFSSDGP 123 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEK-QASRIAHAIVKRRQSAPFQTTQD 190 LDMRM ++A D+VN L RI GEEK A RIA IVK R P +TT Sbjct: 124 LDMRMDKTQRLTAYDIVNFWQENQLRRIFFEYGEEKRYAGRIARFIVKNR---PVETTAK 180 Query: 191 LSSLIQKTVYFSKNN--RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L +I + + + R H ATR FQA+RI VNNE+E L L L G +IV+ Sbjct: 181 LVEVIARALPEKERRFRRRHFATRVFQAIRIAVNNELENLRNFLVQVPDILNQNGRIIVI 240 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDR+VK+ F S +T+K V P+ E+V N ++RS Sbjct: 241 SFHSLEDRIVKEAFRS-----------------IQELDVLTRKPVRPSLEEVRENPKARS 283 Query: 309 AKLRAGMR 316 AK+R R Sbjct: 284 AKMRIAER 291 >gi|194213931|ref|XP_001918167.1| PREDICTED: similar to methyltransferase 5 domain containing 1 [Equus caballus] Length = 401 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 127/328 (38%), Positives = 180/328 (54%), Gaps = 38/328 (11%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H+PV++E+V+ L P G++ LD TFG+GG++R+ + S+ + ALDRDP A + ++ Sbjct: 72 HIPVMVEEVVRCLAPQKGQIFLDMTFGSGGHTRAILQKESDITLYALDRDPTAYALAEQL 131 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 Y +Q FSQ + + GV DGV+ DLG SSMQ+D +RGFS +K GP Sbjct: 132 SELYPKQIRAMLGQFSQAEALLMKAGVQPETLDGVLLDLGCSSMQLDAPERGFSLRKDGP 191 Query: 133 LDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM +A+DVVN + + L IL GEEK A +IA AIV+ R P T Sbjct: 192 LDMRMDGGRYPDMPTAADVVNALDQQALASILRTYGEEKHAKKIASAIVQARSIYPITRT 251 Query: 189 QDLSSLIQKTVYFSK--------NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 Q L+S++ S H AT++FQA RIFVN+E+ EL GL++A+K L+ Sbjct: 252 QQLASIVAGAFPPSAIYARKDLLQRSTHIATKTFQAFRIFVNDELNELYTGLKTAQKFLR 311 Query: 241 AGGLLIVVSFHSLEDRLVKKFF-------------------ASRSGKVMAVRHMIPSNAH 281 GG L+ +SFHSLEDR+VK+F +S+ G + Sbjct: 312 PGGRLVALSFHSLEDRIVKRFLLGISMAERFNLSARQKVIQSSQLGSGHKNKEGGSMGRA 371 Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSA 309 P +++ I K+VV P DV +N R RSA Sbjct: 372 PIMWELIHKRVVTPEDHDVEYNLRERSA 399 >gi|262831569|sp|A0PTJ6|RSMH_MYCUA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 345 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 115/316 (36%), Positives = 172/316 (54%), Gaps = 18/316 (5%) Query: 19 DHVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDP 68 HVPVL ++ + LL PA V++DAT GAGG++ F +I LDRDP Sbjct: 14 HHVPVLAQRCVELLRPALTRHHADGSEAVLVDATIGAGGHAERFLTELPGLRLIGLDRDP 73 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSSMQIDCGD 122 A+ + + + ++ +L + L + + G +DG +FDLGVSSMQ+D + Sbjct: 74 SALEIVRTRLARFTDRVTLVHTRYDGLASALTELGYGAAQSIDGALFDLGVSSMQLDQAE 133 Query: 123 RGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGF++ K PLDMRM+ S +S +D++N + L IL GEE+ A RIA I++RR Sbjct: 134 RGFAYSKDAPLDMRMNPQSALSGADIINTYDEAALADILHRYGEERFARRIAARIIRRRA 193 Query: 182 SAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 PF TT +L +L+ + + + + HPA R+FQALRI VN+E+ L + +A AL Sbjct: 194 DRPFTTTAELVALLYEAIPAAARRTGGHPAKRTFQALRIAVNDELGSLRSAVPAAMDALA 253 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300 GG ++V+++ SLEDR+VK+ FA V + H F+S+T +V Sbjct: 254 VGGRIVVMAYQSLEDRIVKRVFADAVASRTPVDLPVELPGHGPRFRSLTHGAERADAAEV 313 Query: 301 AFNRRSRSAKLRAGMR 316 N RS +LRA R Sbjct: 314 EHNPRSAPVRLRALQR 329 >gi|237752673|ref|ZP_04583153.1| S-adenosyl-methyltransferase MraW [Helicobacter winghamensis ATCC BAA-430] gi|229376162|gb|EEO26253.1| S-adenosyl-methyltransferase MraW [Helicobacter winghamensis ATCC BAA-430] Length = 311 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 105/308 (34%), Positives = 173/308 (56%), Gaps = 15/308 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76 H+PVLLE+V+ +++D T G GG++ + + N+ I +D+D A++ + Sbjct: 4 PHIPVLLEQVLDSFKTLKSGILIDCTLGFGGHTHALLEAYPNLEIIGIDQDSDALAFTAK 63 Query: 77 TMRDYKEQFSLFQATFSQ-----LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + E+FS + +S L + + + G++ D+GVSSMQ D +RGF F Sbjct: 64 RLSVFGERFSYKKGRYSAVVRELLSNKALQENIVGILADIGVSSMQFDNKERGFCFDS-Y 122 Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM +SA ++VN A++ +L RI GE ++ ++A IV+ R++A F + + Sbjct: 123 MLDMRMDREQHLSAKEIVNGASLNELERIFRDFGEIREYKKLARLIVEERKNAKFTSAKH 182 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRS-AEKALKAGGLLIVVS 249 LS LI K K+ +IHPAT++FQALRI VN+E+ EL + L++ E LK G + V++ Sbjct: 183 LSELIAKHF---KHPKIHPATQAFQALRIAVNDELGELERLLQTLGENPLKKGARVSVIT 239 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 FHSLEDR+ K+ F + ++ + +S+ KK + + ++ N RSR Sbjct: 240 FHSLEDRITKQTFREWERDCICDCNIMRCICGGGHSKGKSLYKKPLCADESELRENPRSR 299 Query: 308 SAKLRAGM 315 SAKLR+ Sbjct: 300 SAKLRSFE 307 >gi|296284506|ref|ZP_06862504.1| S-adenosyl-methyltransferase MraW [Citromicrobium bathyomarinum JL354] Length = 303 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 125/303 (41%), Positives = 181/303 (59%), Gaps = 10/303 (3%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET--MRDYKEQF 85 ++A L P ++I+D TFGAGGY+R+ G+ V A DRDP A+ Q + + + Sbjct: 1 MVAALRPVQDELIVDGTFGAGGYTRALLDAGATVHAFDRDPTALENAQGWPELAETPPRL 60 Query: 86 SLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI 142 L + F+ + + ++G VDG+V D+GVSSMQ+D DRGFSF GPLDMRM Sbjct: 61 VLHRRAFADMAAALAEQGIARVDGIVLDIGVSSMQLDQADRGFSFAGDGPLDMRMDPDLP 120 Query: 143 SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS 202 SA+D +N A+ ++ ++ GEE+Q+ RIA AIV R P +TT L+ L++K Sbjct: 121 SAADFLNSADEAEIADVIYQYGEERQSRRIARAIVAAR---PLETTGQLARLVRKATGHK 177 Query: 203 KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF 262 +++ PATR+FQA+RI VN E+E+L L +AE+ L GG L+VVSFHSLEDR+VK+F Sbjct: 178 PHDKKDPATRTFQAIRIHVNGELEQLRGALAAAERLLAPGGRLVVVSFHSLEDRIVKRFM 237 Query: 263 ASRSGK-VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERS 321 SG+ RH+ + PA F + V + ++A N R+RSA LRA RT Sbjct: 238 RDASGQAGGGSRHLPLAETPPATFDKPLR-AVRAGEAELARNPRARSAILRAATRTDAAP 296 Query: 322 IED 324 ++ Sbjct: 297 RKE 299 >gi|71066610|ref|YP_265337.1| S-adenosyl-methyltransferase MraW [Psychrobacter arcticus 273-4] gi|71039595|gb|AAZ19903.1| probable S-adenosyl-methyltransferase [Psychrobacter arcticus 273-4] Length = 384 Score = 310 bits (794), Expect = 2e-82, Method: Composition-based stats. Identities = 113/329 (34%), Positives = 173/329 (52%), Gaps = 31/329 (9%) Query: 20 HVPVLLEKVIALL----------------NPAPGKVILDATFGAGGYSRSFCKMGSN--- 60 H VLL++ +A + + + +DATFG GG+SR ++ Sbjct: 60 HDAVLLQEAVAAVLGVKALPKQTDDESQNSLQASGIYVDATFGRGGHSRLLLSQLADNAT 119 Query: 61 VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQ 117 +I D+DP A+ QE + + + +F+ L D + G VDG++ DLG+SS Q Sbjct: 120 LIVFDKDPTAIRVAQE-LASTDSRVQVVHDSFATLTDSLAAMGITQVDGLMADLGISSPQ 178 Query: 118 IDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 ID G RGFSF + G +DMRM S G S ++ + + L +L GEE+ + RIA AI Sbjct: 179 IDDGSRGFSFMRDGAVDMRMDTSRGQSVAEWLETVDDDTLANVLYDFGEERHSRRIARAI 238 Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236 +Q +++T +L+ +I+ + + HPAT+SFQA+RIF+NNE+ ++ L + Sbjct: 239 ---KQMDRYKSTLELAEVIKVAHPNWQRGK-HPATQSFQAMRIFINNELGDVDNFLEQSI 294 Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK-KVVVP 295 LK GG L V+SFHSLEDR +K+F S +P P + +K K V P Sbjct: 295 PILKVGGQLAVISFHSLEDRRIKQFLQRHSKGQYPEDENLP--MPPKRPRYFSKPKRVGP 352 Query: 296 TQEDVAFNRRSRSAKLRAGMRTVERSIED 324 ++ +++ N RSRSA LR RT + D Sbjct: 353 SKAEISNNPRSRSAWLRMATRTDTDYLAD 381 >gi|86740113|ref|YP_480513.1| S-adenosyl-methyltransferase MraW [Frankia sp. CcI3] gi|123737617|sp|Q2JD58|RSMH_FRASC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|86566975|gb|ABD10784.1| methyltransferase [Frankia sp. CcI3] Length = 321 Score = 310 bits (794), Expect = 2e-82, Method: Composition-based stats. Identities = 111/309 (35%), Positives = 173/309 (55%), Gaps = 11/309 (3%) Query: 24 LLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETM 78 L ++V+ LL PA G +++DAT G GG++ + + ++ LDRDP A+ E + Sbjct: 2 LTDRVLTLLAPALRASGAIVVDATVGLGGHAAAVLTAFPHVRLVGLDRDPDALERSGERL 61 Query: 79 RD-YKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + L A + ++ + + G V G++FDLGVSS+Q+D DRGF++ + PLD Sbjct: 62 HGLAPGRVELVHAVYDEVAEILDRLGHPVVQGILFDLGVSSLQLDTDDRGFAYSRDAPLD 121 Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM + G +A+DV+N + LTRIL GEE+ A RIA AIV+ R PF T+ L+ Sbjct: 122 MRMDQTRGRTAADVLNTYDADALTRILREYGEERFARRIAGAIVQARAVTPFATSARLAD 181 Query: 194 LIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 L++ + ++ +PA R+FQALRI VN E++ LA+ L +A AL G L+V+S+HS Sbjct: 182 LVRDAIPAPARRTGGNPAKRTFQALRIEVNAELDVLARALPAAFDALAVSGRLVVLSYHS 241 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDRLVK+ + + + + +T+ ++ + A N R+ S +LR Sbjct: 242 LEDRLVKRQLRGYAEASVPPDLPVVPEGAGPRLRWLTRGAEPASETEKAENPRAASVRLR 301 Query: 313 AGMRTVERS 321 A RT Sbjct: 302 AVERTAPNP 310 >gi|126695529|ref|YP_001090415.1| S-adenosylmethionine-dependent methyltransferase [Prochlorococcus marinus str. MIT 9301] gi|262824906|sp|A3PAN9|RSMH_PROM0 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|126542572|gb|ABO16814.1| Predicted S-adenosylmethionine-dependent methyltransferase [Prochlorococcus marinus str. MIT 9301] Length = 300 Score = 310 bits (794), Expect = 2e-82, Method: Composition-based stats. Identities = 108/316 (34%), Positives = 174/316 (55%), Gaps = 30/316 (9%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLN----PAPGKV-ILDATFGAGGYSRSFCKMGSNV--I 62 + + +H V+ ++++A L ++ +DAT G GG+S + S++ I Sbjct: 3 TDLSDSSFFNHKSVMTDEIMASLEHYPLIHNNQLKGIDATLGGGGHSYHLLRKYSDLNII 62 Query: 63 ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGD 122 LD+DPFA + + ++K + + + F+ D+VP + V V+ DLGV+S Q+D Sbjct: 63 GLDQDPFARKSALKKLDEFKSRIDIRASNFA---DFVPKEKVSFVIADLGVNSNQLDDPK 119 Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI-VKRR 180 RGFSFQK GPLDMRM+ + A ++ N KDL ++ G+E+ + +IA I + + Sbjct: 120 RGFSFQKDGPLDMRMNPLLDVDAEKLIEVLNEKDLANLIYKYGDERLSRKIARKIKLDLK 179 Query: 181 QSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 ++ + T++L+ I + +IHPATR+FQALRI VN EIE L + L+ + L Sbjct: 180 ENGKYSGTKELAYSIAGCFPPKQRYKKIHPATRTFQALRIAVNKEIEVLEKFLQVVPEWL 239 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 GG++ V+SFHSLEDRLVK F + +++TKK + P++E+ Sbjct: 240 LPGGIISVISFHSLEDRLVKSCFKND-----------------QRLKNLTKKPITPSEEE 282 Query: 300 VAFNRRSRSAKLRAGM 315 V N+R+RS KLR Sbjct: 283 VELNKRARSGKLRIAQ 298 >gi|309807753|ref|ZP_07701687.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LactinV 01V1-a] gi|308169013|gb|EFO71097.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LactinV 01V1-a] Length = 288 Score = 310 bits (794), Expect = 3e-82, Method: Composition-based stats. Identities = 95/249 (38%), Positives = 141/249 (56%), Gaps = 13/249 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77 H VLL + I LN V +DATFG GG++ K ++I D+D +A+ +++ Sbjct: 7 HYSVLLHETIDNLNLKNDGVYVDATFGGGGHASYLLKQLSNGHLIGFDQDEYAIELAKKS 66 Query: 78 M-----RDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 + K + SL F LQ + G+DG+ +DLGVSS Q D +RGFS++ Sbjct: 67 FSEVLKANSKPKLSLVHDNFGNLQQNLAKLGFIDGIDGIYYDLGVSSPQFDQPERGFSYR 126 Query: 129 KSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 + LDMRM + + A +VN + K+L+ IL G+EK A +IA IV RR P T Sbjct: 127 FNARLDMRMDQTKDLDAYKIVNTWSQKELSNILFKYGDEKYARQIAKNIVARRAIKPITT 186 Query: 188 TQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T +L +I++ + F++ HPA +SFQA+RI VN+E+E L + L A + LK GG + Sbjct: 187 TFELVDIIKEAIPAFARRTGGHPAKKSFQAIRIAVNDELEVLEKSLLEAIEILKPGGRIC 246 Query: 247 VVSFHSLED 255 V++F SLED Sbjct: 247 VITFQSLED 255 >gi|326771704|ref|ZP_08230989.1| S-adenosyl-methyltransferase MraW [Actinomyces viscosus C505] gi|326637837|gb|EGE38738.1| S-adenosyl-methyltransferase MraW [Actinomyces viscosus C505] Length = 375 Score = 310 bits (794), Expect = 3e-82, Method: Composition-based stats. Identities = 117/339 (34%), Positives = 180/339 (53%), Gaps = 24/339 (7%) Query: 17 IGDHVPVLLEKVIALLNPAPGK-------------VILDATFGAGGYSRSFCKMGS--NV 61 +G H PVLLE+ + LL PA V++D T G GG++ + + + V Sbjct: 14 VGRHKPVLLERCLDLLAPAIEGAAGSAAAPGPAQPVMIDCTLGMGGHTEAALERFATLKV 73 Query: 62 IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV------DGVVFDLGVSS 115 + +DRDP A++ + + ++F QAT+ + + V D V+ DLGVSS Sbjct: 74 VGIDRDPEAIALASARLARFGDRFVAVQATYDAVSRVAREHSVRAEGTVDAVLMDLGVSS 133 Query: 116 MQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAH 174 +Q+D RGFS+ + PLDMRM SG++A D++ A+ +LTRIL GEE+ ASRIA Sbjct: 134 LQLDEASRGFSYARPAPLDMRMDQGSGMTAQDLLEHADAAELTRILRTYGEERFASRIAA 193 Query: 175 AIVKRRQSA-PFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGL 232 AIV+RR+S P +TQDL+ L++++V ++ + HPA R+FQALRI VN E++ L + + Sbjct: 194 AIVRRRESGDPVASTQDLAELVRQSVPAPARRSGGHPAKRTFQALRIAVNAELDVLERAV 253 Query: 233 RSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV 292 A +L+ GG L+V S+ SLEDR+VK+ A + + + +T Sbjct: 254 PRALNSLRVGGRLVVESYQSLEDRIVKRALAHGATSRAPQDLPVVPEVDRPYLELLTNGA 313 Query: 293 VVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDDSFVHLP 331 ++ N RS +LRA +R P Sbjct: 314 EKADARELDHNPRSAPVRLRAAVRLRPADQAPSPEASAP 352 >gi|229817311|ref|ZP_04447593.1| hypothetical protein BIFANG_02572 [Bifidobacterium angulatum DSM 20098] gi|229785100|gb|EEP21214.1| hypothetical protein BIFANG_02572 [Bifidobacterium angulatum DSM 20098] Length = 354 Score = 310 bits (794), Expect = 3e-82, Method: Composition-based stats. Identities = 108/320 (33%), Positives = 162/320 (50%), Gaps = 13/320 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIA----LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVI 62 M+ H PVLLE + L+ +I+D T G G++ +F K ++ Sbjct: 1 MTMDNRDVSTIHQPVLLEDCVRLVTGGLSRKQSPIIVDCTLGLAGHATAFLKAAPQARLV 60 Query: 63 ALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQ 117 +DRD A++ E M+ ++F A F + + D G VD DLG+SS+Q Sbjct: 61 GIDRDAEALALATERMKAEGLADRFIPVHAPFDEFTRALDDNGIHHVDAAFMDLGLSSLQ 120 Query: 118 IDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 ID +RGFS+ PLDMRM S ++A V+ + + +DL RI + GEE+ A IA I Sbjct: 121 IDETERGFSYSHDAPLDMRMDVSQALTAEQVLAEYDERDLARIFKVYGEERFARPIARRI 180 Query: 177 VKRR-QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 V RR Q P T+ +L+ L+ + + + +PA R FQALRI VN E+++LA L Sbjct: 181 VARRTQEGPLTTSAELNELVDEVIPKAHRPAGNPAKRVFQALRIEVNGELDKLAGTLPQI 240 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295 L GG ++V S+HSLED+ VK F + I F+ +T+ V Sbjct: 241 ALKLNKGGRIVVESYHSLEDKTVKSFMTQGLTARVPANMPIVPPEAMPFFKELTRGAVKA 300 Query: 296 TQEDVAFNRRSRSAKLRAGM 315 ++++A N RS S +LRA Sbjct: 301 DEQEIASNPRSASVRLRAVE 320 >gi|156551077|ref|XP_001602807.1| PREDICTED: similar to GA13173-PA [Nasonia vitripennis] Length = 426 Score = 309 bits (793), Expect = 3e-82, Method: Composition-based stats. Identities = 123/338 (36%), Positives = 176/338 (52%), Gaps = 35/338 (10%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFA 70 + + H PV+L++ I L +PG I+D TFGAGG+SR + +V ALDRD A Sbjct: 90 LPYKHQPHTPVMLKETIEYLKLSPGDTIVDMTFGAGGHSRKILESVPHVTIFALDRDEVA 149 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYV-----PDKGVDGVVFDLGVSSMQIDCGDRGF 125 + +E Y Q FS+L + + +DG +FD G SSMQ D +RGF Sbjct: 150 HNYAKELAEKYPGQVIPLLGRFSELPQLLGKYKVKENSIDGFLFDFGCSSMQFDRPERGF 209 Query: 126 SFQKSGPLDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 K+GPLDMRM +A+DV+ +A+ +DL IL GEEK+A +IA AI++ R Sbjct: 210 MISKNGPLDMRMDGFRCPEEPTAADVLARADERDLYHILKYYGEEKRAKKIARAIIEARY 269 Query: 182 S-APFQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 + +TTQ+L+ LI+ H AT++FQALRIFVNNE+ E+ G+ A Sbjct: 270 TFRSLRTTQELAKLIESLFPSDINTDQIGRFQHSATKTFQALRIFVNNELNEINHGIVIA 329 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFF----------------ASRSGKVMAVRHMIPSN 279 EK LK G +I +SFHSLED +VK+ + ++ Sbjct: 330 EKLLKINGRMITISFHSLEDTIVKRHLSGNVTDSVANQLPLRYRNYGKVWTCKEDIMELT 389 Query: 280 AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 P + + K ++ PT E+V +N RSRSAK RA + Sbjct: 390 ESP--WMMLHKHILSPTDEEVYYNPRSRSAKFRAIAKI 425 >gi|225619046|ref|YP_002720272.1| S-adenosyl-methyltransferase MraW [Brachyspira hyodysenteriae WA1] gi|263445852|sp|C0QWF7|RSMH_BRAHW RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|225213865|gb|ACN82599.1| S-adenosyl-methyltransferase MraW [Brachyspira hyodysenteriae WA1] Length = 300 Score = 309 bits (793), Expect = 3e-82, Method: Composition-based stats. Identities = 98/302 (32%), Positives = 173/302 (57%), Gaps = 16/302 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H PV+L++V++ + P K+ +DAT G GG++++ + V + +RD + ++ ++ Sbjct: 11 HTPVMLKEVLSFI-PENAKIAVDATLGEGGHTKAMLDLNLEVHSFERDSAILEIAKKRLK 69 Query: 80 DYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 +Y ++F + T+ ++ + + D VD +++DLGVS +RGFSF+ + LDMR Sbjct: 70 NY-DKFHYYNNTYDKMIEELDDSIIGNVDFMLYDLGVSLFHFKKAERGFSFKDNVRLDMR 128 Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 + + SA DV+N + ++L R+L GE A ++A+ IVK R +T+++L ++I Sbjct: 129 LGLNEKSAYDVINGYSEEELERVLRDYGEISNARKMANVIVKERNRRKIETSRELENIIF 188 Query: 197 K-TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 T + +IHPAT FQA+RI VN+E+ L + + + LK G+++V+S+HSLED Sbjct: 189 HNTDKSQRYGKIHPATLVFQAIRIEVNDELNILEKSISNIPSILKQNGVVVVMSYHSLED 248 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 R++KKFF + +F+ + KV +PT E++ N SRSAK+R Sbjct: 249 RIIKKFFKENEK----------TKNKDGIFKLLNNKVKLPTNEEIKSNPASRSAKMRIAQ 298 Query: 316 RT 317 + Sbjct: 299 KV 300 >gi|330723232|gb|AEC45602.1| Ribosomal RNA small subunit methyltransferase H [Mycoplasma hyorhinis MCLD] Length = 298 Score = 309 bits (793), Expect = 3e-82, Method: Composition-based stats. Identities = 101/307 (32%), Positives = 152/307 (49%), Gaps = 16/307 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76 DH+PVLL++VI LN + LD T G GG+S K +I D+D A+ +E Sbjct: 2 DHIPVLLDQVIDQLNIKEDGIYLDLTLGRGGHSSQILKKLTSGKLIVFDKDKQAIEQTKE 61 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + F + VDGV+ DLGVSS Q+D +RGFS+ K L Sbjct: 62 KLLKISSNIEFIWSDFKDFDQELKKLQINKVDGVLLDLGVSSPQLDQANRGFSYNKQARL 121 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ SA ++VN+ + + L I G+ A+ IA IVK R P T +L Sbjct: 122 DMRMNQAQSFSAYELVNEYSKEKLVNIFTNYGQVPFANNIAEDIVKLR---PITYTTELV 178 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I+ ++ + +PA FQA+RI VN E+E L L +K LK G L +++FHS Sbjct: 179 DIIKHSLPNFVLRKKNPAKNVFQAIRIEVNQELESLNIFLSKIDKFLKKDGKLAIITFHS 238 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LED++VK +F + + A + K Q+++ N+R++SAKLR Sbjct: 239 LEDKIVKNYFKQLLKQ----NQTLFFETTQAKYLV---KTTWANQKEIDNNKRAKSAKLR 291 Query: 313 AGMRTVE 319 + + Sbjct: 292 VLTKLIN 298 >gi|123967726|ref|YP_001008584.1| S-adenosylmethionine-dependent methyltransferase [Prochlorococcus marinus str. AS9601] gi|262824992|sp|A2BNW6|RSMH_PROMS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|123197836|gb|ABM69477.1| Predicted S-adenosylmethionine-dependent methyltransferase [Prochlorococcus marinus str. AS9601] Length = 300 Score = 309 bits (793), Expect = 3e-82, Method: Composition-based stats. Identities = 107/316 (33%), Positives = 174/316 (55%), Gaps = 30/316 (9%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLN----PAPGKV-ILDATFGAGGYSRSFCKMGSNV--I 62 + + +H V+ ++++A L ++ +DAT G GG+S + S++ I Sbjct: 3 TDLSDSSFFNHQSVMTDEIMASLEHYPLIHNNQLKGIDATLGGGGHSYHLLRKYSDLNII 62 Query: 63 ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGD 122 LD+DPFA + + ++K + + + F+ D+VP + V V+ DLGV+S QID Sbjct: 63 GLDQDPFARKSASKKLDEFKNRIDIRASNFA---DFVPKEKVSFVIADLGVNSNQIDDPK 119 Query: 123 RGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI-VKRR 180 RGFSFQK GPLDMRM+ + A ++ N KDL ++ GEE+ + +IA I + + Sbjct: 120 RGFSFQKDGPLDMRMNPFLDVDADKLIEALNEKDLANLIYKYGEERLSRKIARKIKLDLK 179 Query: 181 QSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 ++ + T++L+ I + +IHPATR+FQALRI VN EIE L + L+ + L Sbjct: 180 ENGKYSGTKELAYSIAGCFPPKQRYKKIHPATRTFQALRIAVNKEIEVLEKFLQVVPEWL 239 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 GG++ ++SFHSLEDRLVK F + +++TKK + P++++ Sbjct: 240 LPGGIISIISFHSLEDRLVKSCFKND-----------------QRLKNLTKKPITPSEQE 282 Query: 300 VAFNRRSRSAKLRAGM 315 + N+R+RS KLR Sbjct: 283 IELNKRARSGKLRIAQ 298 >gi|153952604|ref|YP_001398362.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp. doylei 269.97] gi|263445759|sp|A7H4D2|RSMH_CAMJD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|152940050|gb|ABS44791.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp. doylei 269.97] Length = 310 Score = 309 bits (793), Expect = 4e-82, Method: Composition-based stats. Identities = 102/302 (33%), Positives = 156/302 (51%), Gaps = 9/302 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76 H+PVLL +V + LD T G GG+S + K + IA D+D A+ ++ Sbjct: 4 PHIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSETLLKNHPGLKFIACDQDQQALEFSKK 63 Query: 77 TMRDYKEQFSLFQATFSQ-LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 ++D+ + + Q+ FS+ L+ + + G++ D+GVSS Q+D +RGFS LDM Sbjct: 64 RLKDFHNRITFIQSNFSEVLEKISHKEELRGILADIGVSSFQLDNNERGFSVNSD-FLDM 122 Query: 136 RMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 RM+ S ISA +VVN + LT I GE A IA I R ++ ++L + Sbjct: 123 RMNQNSKISAYEVVNAYTKEQLTSIFKDYGELHDAHFIAEKICLERSKNLIKSAKELYQI 182 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 I K + +I AT +FQA+RI VN E++ L L E +L ++SFHSLE Sbjct: 183 IGK--GKQNHRKISKATLAFQAIRIEVNQELKVLKDFLGYLENLKPKNCILAIISFHSLE 240 Query: 255 DRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 DR+VK FF S + + + ++ Q ITKK + ++E++ N RS AK+R Sbjct: 241 DRIVKNFFKKWSKNCICDEKIMRCKCGNNHSLGQIITKKSISASKEELLKNSRSSCAKMR 300 Query: 313 AG 314 A Sbjct: 301 AF 302 >gi|145350048|ref|XP_001419435.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144579666|gb|ABO97728.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 314 Score = 309 bits (792), Expect = 4e-82, Method: Composition-based stats. Identities = 108/315 (34%), Positives = 166/315 (52%), Gaps = 25/315 (7%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDY 81 +++V+ + +D T GAGG++R+ + + + D D A + + + Sbjct: 1 MDEVLEAFRDVRARTHVDGTLGAGGHARAMIEAHEEMEHFVGFDVDASAHALARPRLERA 60 Query: 82 KE-----------QFSLFQATFSQLQDYVPDKGVDGVV---FDLGVSSMQIDCGDRGFSF 127 + + SL +A F ++++ + VDGV DLGVSSM +D +RGFSF Sbjct: 61 RAATRGDEATTTLRLSLVEANFRRMREALRALDVDGVDSVVLDLGVSSMHLDRAERGFSF 120 Query: 128 QKSGPLDMRMSCSGIS-ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 GPLDMRM S + A ++VN +++ RIL GEEK +A I +RR + Sbjct: 121 MNDGPLDMRMGESATTTAEEIVNAWPEEEIGRILREYGEEKHWRLLARRICERRAEKEIR 180 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 TT++L I K IHPATR+FQ +RI VN+E+ + + +A +AL+ GG L Sbjct: 181 TTRELVDAIGNV--PGKWGSIHPATRTFQGIRIAVNDELGAVEDVIPAAIEALRPGGRLA 238 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAV-----RHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 ++SFHSLED +VK+ F +G+ R+M A P + + IT+K VPT ++ Sbjct: 239 IISFHSLEDSIVKRRFRHFAGRAEPPSEEVNRYMPQPEAPPKIVKLITRKPKVPTSAEID 298 Query: 302 FNRRSRSAKLRAGMR 316 N RSRSAKLR + Sbjct: 299 VNVRSRSAKLRVCEK 313 >gi|303279384|ref|XP_003058985.1| predicted protein [Micromonas pusilla CCMP1545] gi|226460145|gb|EEH57440.1| predicted protein [Micromonas pusilla CCMP1545] Length = 295 Score = 309 bits (792), Expect = 4e-82, Method: Composition-based stats. Identities = 107/293 (36%), Positives = 150/293 (51%), Gaps = 14/293 (4%) Query: 38 KVILDATFGAGGYSRSFCKMGSNVI---ALDRDPFAVSCGQ--ETMRDYKEQFSLFQATF 92 K +D T GAGG++ + ++ D DP A + + + F+A Sbjct: 2 KTYVDGTMGAGGHACAVIGEHLELVTFVGFDVDPLAHAIAPRGARVLELNTVLDNFRAMR 61 Query: 93 SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQA 151 +L + + VD ++ DLGVSSM +D +RGFSF GPLDMRM S SA DVVN+ Sbjct: 62 FRLDELELNGKVDAILLDLGVSSMHLDSPERGFSFGNDGPLDMRMGPSCAFSAMDVVNEW 121 Query: 152 NVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRI--HP 209 +D+ R++ GEEK IA I +RR AP TT L I + K HP Sbjct: 122 PEEDIARVIRDYGEEKHWRLIARRICERRAEAPILTTSALVRAIGRVPGVKKGRSGNVHP 181 Query: 210 ATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKV 269 ATR+FQ +RI VN+E+ + + +A AL GG L V+SFHSLED++VK F R+G+ Sbjct: 182 ATRTFQGIRIAVNDELGAIEDAIPAAIDALAPGGRLGVISFHSLEDKIVKDIFRERAGRA 241 Query: 270 MAVRH------MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 P V + IT+K + +++V N RSRSAKLR + Sbjct: 242 PPPDEGPVSAWAPQPEPPPKVVKLITRKPLSADEDEVRENARSRSAKLRVCEK 294 >gi|115372771|ref|ZP_01460077.1| S-adenosyl-methyltransferase MraW [Stigmatella aurantiaca DW4/3-1] gi|115370252|gb|EAU69181.1| S-adenosyl-methyltransferase MraW [Stigmatella aurantiaca DW4/3-1] Length = 278 Score = 309 bits (792), Expect = 4e-82, Method: Composition-based stats. Identities = 105/282 (37%), Positives = 153/282 (54%), Gaps = 8/282 (2%) Query: 40 ILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYV 99 ILD T G GG++ + G+ VI +DRDP A++ + + F F +L Sbjct: 2 ILDGTLGGGGHTEALLARGATVIGVDRDPVALAAATARLGGHAH-FQARAGNFGELPRVA 60 Query: 100 PDK-GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTR 158 D VDGV+ DLGVSS Q+D +RGFSF GPLDMRM G +A++++ Q + ++L R Sbjct: 61 ADVLPVDGVLVDLGVSSPQLDVAERGFSFNHDGPLDMRMGPEGRTAAELIAQEDERELAR 120 Query: 159 ILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQAL 217 I+ LGEE + IA + + T + + +++ V RIH AT++FQAL Sbjct: 121 IIYELGEESFSRPIARELKRALP----TRTLEAAEAVKRAVPRKAWPKRIHVATKTFQAL 176 Query: 218 RIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MI 276 R+ VN E+E L L + + LK GG V++FHSLEDR VK+ F + G + Sbjct: 177 RMAVNGELEALDALLGALPRLLKVGGRAAVIAFHSLEDRKVKEAFRNLVGACRCPPGLPV 236 Query: 277 PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318 + P F +TKK V ++++V N RSRSA LRA + Sbjct: 237 CACGGPGDFAPLTKKAVSASEQEVELNPRSRSAHLRAVEKIR 278 >gi|237785335|ref|YP_002906040.1| S-adenosyl-methyltransferase [Corynebacterium kroppenstedtii DSM 44385] gi|263446144|sp|C4LI42|RSMH_CORK4 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|237758247|gb|ACR17497.1| S-adenosyl-methyltransferase [Corynebacterium kroppenstedtii DSM 44385] Length = 390 Score = 309 bits (792), Expect = 4e-82, Method: Composition-based stats. Identities = 112/330 (33%), Positives = 175/330 (53%), Gaps = 23/330 (6%) Query: 11 SAIHHTIGDHVPVLLEKVIALLNP--------APGKVILDATFGAGGYSRSFCKMGSN-- 60 + H HVPV+LE+++ L+ P + VILD T GAGG++ SF + + Sbjct: 2 ADRHTGTHGHVPVMLERMVELIAPTVTESSENSAPSVILDGTLGAGGHTESFLERFPSAM 61 Query: 61 VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD-----------KGVDGVVF 109 VI +DRD +S E + ++++F A F + + D G+ F Sbjct: 62 VIGVDRDKKELSRTTERLSRFQDRFYPVHARFDNFDEALDDADHPVVDAFDAHGLSAGFF 121 Query: 110 DLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQ 168 DLGVSSMQ+D DRGF+++ GPLDMRM S G +A+DV+N + +L RIL G+E+ Sbjct: 122 DLGVSSMQLDQVDRGFTYRDDGPLDMRMDTSTGKTAADVLNTYSHGELARILKTYGDERF 181 Query: 169 ASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEE 227 A +A AIV+ R+ P+ T+Q L LI T+ ++ + HPA R+FQALR+ VN E++ Sbjct: 182 AGPLARAIVREREKEPWSTSQRLVDLIYATIPASARRHGGHPAKRTFQALRVEVNAELDA 241 Query: 228 LAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS 287 L + + L GG + +S+ SLED++VK+ A+ + I F Sbjct: 242 LRRVIPKVCSYLHLGGRAVFMSYQSLEDKIVKRELAALTESKTPPGLPIDLPNSAPDFHL 301 Query: 288 ITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 +T+ +++ N R+ S ++RA RT Sbjct: 302 VTRGSEKADEQENNKNPRAHSVRVRAVERT 331 >gi|296393499|ref|YP_003658383.1| S-adenosyl-methyltransferase MraW [Segniliparus rotundus DSM 44985] gi|296180646|gb|ADG97552.1| S-adenosyl-methyltransferase MraW [Segniliparus rotundus DSM 44985] Length = 319 Score = 309 bits (792), Expect = 5e-82, Method: Composition-based stats. Identities = 112/311 (36%), Positives = 177/311 (56%), Gaps = 7/311 (2%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 HVPVLL +V+ LL PA P V++DAT G GG++++ + V+ +DRD A+ Sbjct: 8 HVPVLLHRVVQLLAPALSAPNPVLVDATLGLGGHTKALLERFPALRVVGVDRDEKAIEVA 67 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + + ++ A F +++ + D+ +G + DLGVSSMQ+D RGF++ K PLD Sbjct: 68 RARLGALADRVRFVHARFDEVEHALGDEAANGYLLDLGVSSMQLDQAQRGFAYSKEAPLD 127 Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM S ++A++V+ ++L R+L GEE+ ASRIA AIV+RR +AP ++ +L Sbjct: 128 MRMDSSAELTAAEVLATYEERELARVLRTYGEERFASRIAAAIVRRRSTAPLSSSAELVR 187 Query: 194 LIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 LI + K HPA R+FQALR+ VN+E+ L L A AL G ++V+++ S Sbjct: 188 LIDDAIPAKAKRTGGHPAKRTFQALRVEVNDELGSLRAALPKALAALAPSGRIVVLAYQS 247 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK+ FA + + + A F S+T+ + + E++A N R+ S +LR Sbjct: 248 LEDRIVKEAFARATTSRTPIGLPVELPGFAAEFVSLTRGAELASDEEIAQNSRAASVRLR 307 Query: 313 AGMRTVERSIE 323 R ++ Sbjct: 308 GVERIPHAEVD 318 >gi|282857251|ref|ZP_06266491.1| S-adenosyl-methyltransferase MraW [Pyramidobacter piscolens W5455] gi|282584901|gb|EFB90229.1| S-adenosyl-methyltransferase MraW [Pyramidobacter piscolens W5455] Length = 313 Score = 309 bits (791), Expect = 5e-82, Method: Composition-based stats. Identities = 116/324 (35%), Positives = 169/324 (52%), Gaps = 23/324 (7%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76 +HVPVLL KV+ ++ +I+D T G GGYS +F K V+ +DRD A + + Sbjct: 4 EHVPVLLAKVVESMDLKADALIVDGTLGLGGYSEAFLKRSPRWRVVGIDRDERARNIACQ 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + E+F F + G VD VV DLGVS+MQ+ G RGFSF++ GPL Sbjct: 64 RLAPFGERFLALDGDFRNIGGLCASVGIRAVDCVVLDLGVSNMQLADGRRGFSFREDGPL 123 Query: 134 DMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 DMRM+ + SAS++VN+ + L I GEE+ A IA IVK R P +T +L Sbjct: 124 DMRMNPAEGTRSASELVNELPRESLADIFRKYGEERFAWSIAGEIVKERLKRPITSTAEL 183 Query: 192 SSLIQKTVYFS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 +I++ + + HPA + FQALR+ VN+E+ L QGL A L G L+VV+ Sbjct: 184 VEVIRRGIPAPVMRKMNGHPARKVFQALRVAVNDELGALEQGLDEAFSLLAEEGRLLVVT 243 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 +HSLEDR+VK+ F + + V +K VP E+V N +SRSA Sbjct: 244 YHSLEDRIVKRRFREWNEEGKGVLEP--------------RKGQVPDDEEVERNPKSRSA 289 Query: 310 KLRAGMRTVERSIEDDSFVHLPRL 333 +LR ++ + + R+ Sbjct: 290 RLRGFLKKNVPNKAEGRIGPWRRV 313 >gi|254527132|ref|ZP_05139184.1| S-adenosyl-methyltransferase MraW [Prochlorococcus marinus str. MIT 9202] gi|221538556|gb|EEE41009.1| S-adenosyl-methyltransferase MraW [Prochlorococcus marinus str. MIT 9202] Length = 300 Score = 309 bits (791), Expect = 5e-82, Method: Composition-based stats. Identities = 109/316 (34%), Positives = 175/316 (55%), Gaps = 30/316 (9%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLN----PAPGKV-ILDATFGAGGYSRSFCKMGSNV--I 62 + + +H V+ +++IA L ++ +DAT G GG+S + + S + I Sbjct: 3 TDLSDSSFFNHKSVMTDEIIASLEHYPLIHNNQLKGIDATLGGGGHSFNLLRKYSELNII 62 Query: 63 ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGD 122 LD+DPFA + + +K + + + F+ D+VP + V V+ DLGV+S QID Sbjct: 63 GLDQDPFARISASKKLDKFKNRIDIRASNFA---DFVPKEKVSFVIADLGVNSNQIDDPK 119 Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI-VKRR 180 RGFSFQK GPLDMRM+ + A ++ N KDL ++ G+E+ + +IA I + + Sbjct: 120 RGFSFQKDGPLDMRMNPLLEVDAEKLIEALNEKDLANLIYKYGDERLSRKIARKIKLDLK 179 Query: 181 QSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 ++ + T++L+ I + +IHPATR+FQALRI VN EIE L + L++ + L Sbjct: 180 ENGKYSGTKELAYSIAGCFPPKQRYKKIHPATRTFQALRIAVNKEIEVLEKFLQAVPEWL 239 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 GG++ ++SFHSLEDRLVK F + +++TKK + P++++ Sbjct: 240 LPGGIISIISFHSLEDRLVKSSFKND-----------------QRLKNLTKKPITPSEQE 282 Query: 300 VAFNRRSRSAKLRAGM 315 V FN+R+RS KLR Sbjct: 283 VEFNKRARSGKLRIAQ 298 >gi|160896909|ref|YP_001562491.1| S-adenosyl-methyltransferase MraW [Delftia acidovorans SPH-1] gi|263446201|sp|A9BUJ8|RSMH_DELAS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|160362493|gb|ABX34106.1| S-adenosyl-methyltransferase MraW [Delftia acidovorans SPH-1] Length = 309 Score = 309 bits (791), Expect = 5e-82, Method: Composition-based stats. Identities = 122/311 (39%), Positives = 180/311 (57%), Gaps = 17/311 (5%) Query: 20 HVPVLLEKVIALL---NPAP-GKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVS 72 H+ VLL++ + L P +DATFG GG+SR + ++A D+DP A+ Sbjct: 7 HITVLLDEAVDALLDGAAQPVAGQWVDATFGRGGHSRRILQRLGPDGALLAFDKDPDAIE 66 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E R +FS+ F L + +P V GV+ DLGVSS QID +RGFSF+ GP Sbjct: 67 ---EAARITDARFSIRHEGFRHLSE-LPAGSVQGVLMDLGVSSPQIDNPERGFSFRFEGP 122 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ-SAPFQTTQD 190 LDMRM + G S +D + +A+ + + ++ GEE+ A IA AIV RR+ P + T + Sbjct: 123 LDMRMDTTRGQSVADWLAEADAQQIAEVIRDYGEERFAGPIAKAIVARRESQGPLRNTAE 182 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L+ L+ V ++ +PATR+FQALRIF+N E+EEL Q L ++ + L GG L+V+SF Sbjct: 183 LAELVAGAV-RTREAGQNPATRTFQALRIFINAELEELEQALEASLRVLAPGGRLVVISF 241 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDR+VK+F A S +V R + P +++ + + P++ +VA N RSRSA Sbjct: 242 HSLEDRIVKQFIAKHSKEVY-DRRAPFAVPTPMRLEALGR--IKPSEAEVAANARSRSAV 298 Query: 311 LRAGMRTVERS 321 +R RT + Sbjct: 299 MRVARRTGVPA 309 >gi|57167704|ref|ZP_00366844.1| S-adenosyl-methyltransferase MraW [Campylobacter coli RM2228] gi|57020826|gb|EAL57490.1| S-adenosyl-methyltransferase MraW [Campylobacter coli RM2228] Length = 311 Score = 309 bits (791), Expect = 5e-82, Method: Composition-based stats. Identities = 97/302 (32%), Positives = 152/302 (50%), Gaps = 11/302 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76 H+PVLL +V LD T G GG+S S K N+ IA D+D A+ ++ Sbjct: 4 PHIPVLLNEVNQAFEKLNSGYFLDCTLGFGGHSESLLKDHPNLKLIACDQDKEALEFSKK 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + D+K++ + FSQ+ D + ++ G++ D+GVSS Q+D RGF+ L Sbjct: 64 RLHDFKDRTEFVLSNFSQILDQISHDKLNDLKGILADIGVSSYQLDNNKRGFNLHSD-FL 122 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ ISA +++N + L+ I GE IA I + RQ ++ ++L Sbjct: 123 DMRMNQDVKISAFELINNYTQEQLSDIFKKYGELNDGYFIAQKICQERQKNKIKSAKELY 182 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I KT + + AT FQA+RI VN E+E L L EK +L ++ FHS Sbjct: 183 EIIGKT--KQNHRSVSKATLVFQAIRIEVNQELEVLKNFLEKLEKIKLKNCILAIICFHS 240 Query: 253 LEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 LEDR+VK +F + + + ++ + I KK + P++E++ N RS AK Sbjct: 241 LEDRIVKNYFKKWAKNCICDERAFRCECGNNHSLGEIINKKAITPSKEEIMINSRSSCAK 300 Query: 311 LR 312 +R Sbjct: 301 MR 302 >gi|160878432|ref|YP_001557400.1| S-adenosyl-methyltransferase MraW [Clostridium phytofermentans ISDg] gi|263433271|sp|A9KS30|RSMH1_CLOPH RecName: Full=Ribosomal RNA small subunit methyltransferase H 1; AltName: Full=16S rRNA m(4)C1402 methyltransferase 1; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH 1 gi|160427098|gb|ABX40661.1| S-adenosyl-methyltransferase MraW [Clostridium phytofermentans ISDg] Length = 366 Score = 309 bits (791), Expect = 5e-82, Method: Composition-based stats. Identities = 106/331 (32%), Positives = 163/331 (49%), Gaps = 31/331 (9%) Query: 3 SKSCKTMSSAIHH---TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG- 58 K T+ I G H+ + + +++ L PG+ LDAT G GG++R K Sbjct: 49 EKYADTIEKVIQKGSTPAGMHISICVNEILEFLQIKPGQKGLDATLGYGGHTREMLKCLE 108 Query: 59 --SNVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLG 112 ++ ALD DP + +E +++ E ++ Q F+ + + V + G D V+ DLG Sbjct: 109 SQGHMYALDVDPIEIVKTRERLQNLGFGPEILTIKQLNFANIDEVVEEAGLFDFVLADLG 168 Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASR 171 VSSMQID DRGFSF+ GPLD+R++ GISA++ + + +L +L +E + Sbjct: 169 VSSMQIDDPDRGFSFKTDGPLDLRLNPEKGISAAERLKTISQTELQGMLLENSDEPYSEE 228 Query: 172 IAHAIVKR-RQSAPFQTTQDLSSLIQKTVYFSKNNR-----IHPATRSFQALRIFVNNEI 225 I+ AIV ++ TT L LI K + N R+FQALRI VNNE Sbjct: 229 ISKAIVNEIKRGNEIDTTTKLRDLISKVLVTIPENEQKEAIKKTCQRTFQALRIDVNNEY 288 Query: 226 EELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF 285 E L L L GG + +++FHS EDRLVKK F + ++ Sbjct: 289 EVLYSFLEKLPNVLAKGGRVAILTFHSGEDRLVKKSFKNL--------------QRAGIY 334 Query: 286 QSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 ++ V+ P+ E+ N R+RS K+R ++ Sbjct: 335 SEVSDDVIRPSAEECNRNPRARSTKMRWAIK 365 >gi|75675236|ref|YP_317657.1| methyltransferase [Nitrobacter winogradskyi Nb-255] gi|88909206|sp|Q3STT6|RSMH_NITWN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|74420106|gb|ABA04305.1| methyltransferase [Nitrobacter winogradskyi Nb-255] Length = 332 Score = 309 bits (791), Expect = 5e-82, Method: Composition-based stats. Identities = 126/289 (43%), Positives = 170/289 (58%), Gaps = 5/289 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78 HVPVL + +A+L P G V +DATFGAGGYSR+ VI +DRDP A++ G + Sbjct: 8 HVPVLGREAVAMLAPRAGGVYVDATFGAGGYSRAILATAETRVIGIDRDPTAIAGGSGLV 67 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV---SSMQIDCGDRGFSFQKSGPLDM 135 + + L + FS L + V + SSMQ+D RGFSF+ GPLDM Sbjct: 68 EESGGRLILVEDRFSHLAAVCAAQDAAAVDGVVMDVGVSSMQLDEAGRGFSFRLDGPLDM 127 Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 RMS G +A++VV +A+ DL I+ I GEE+++ +A AIV R+ P TT+ L+ ++ Sbjct: 128 RMSGHGPTAAEVVARASETDLADIIYIFGEERRSRAVARAIVGARRHGPIATTRALADIV 187 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 K V +K + IHPATR+FQALRIFVN E++EL L +AE+ LK GG L VVSFHSLED Sbjct: 188 SKVV-RAKPHEIHPATRTFQALRIFVNEELDELIAALAAAERVLKPGGRLAVVSFHSLED 246 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 R+VK F A R RH P F +TK+ + P ++V N Sbjct: 247 RIVKNFLAWRGKTGGGSRHRPEIERAPPSFAILTKRPLTPGDDEVQANP 295 >gi|305681071|ref|ZP_07403878.1| S-adenosyl-methyltransferase MraW [Corynebacterium matruchotii ATCC 14266] gi|305659276|gb|EFM48776.1| S-adenosyl-methyltransferase MraW [Corynebacterium matruchotii ATCC 14266] Length = 341 Score = 309 bits (791), Expect = 5e-82, Method: Composition-based stats. Identities = 115/334 (34%), Positives = 178/334 (53%), Gaps = 27/334 (8%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPA------PGKVILDATFGAGGYSRSFCKMGS--N 60 M + +H HVPVL E+V LL PA +ILDAT GAGG+S F + Sbjct: 1 MENTNNH---GHVPVLRERVTELLAPALCNTITNPPIILDATLGAGGHSEYFLTTFPQVH 57 Query: 61 VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD--------------KGVDG 106 +I LDRD A++ + D+ ++ + F + +G+ G Sbjct: 58 IIGLDRDTTALAQAATRLADFGDRITTLHTRFDDFPTAIQAAADAGNATCQAALTEGISG 117 Query: 107 VVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGE 165 +FDLGVSSMQ+D +RGF+++ PLDMRM+ S GI+A++++N DLTRIL G+ Sbjct: 118 ALFDLGVSSMQLDQVNRGFAYRVDAPLDMRMNNSEGITAAEILNTYPHGDLTRILKTYGD 177 Query: 166 EKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNE 224 E+ AS+IA AI++ R+ APF T+ L L+ T+ + + HPA R+FQALRI VN E Sbjct: 178 ERFASKIATAIIREREHAPFTTSARLVELLYNTIPAATRRTGGHPAKRTFQALRIEVNQE 237 Query: 225 IEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV 284 + + L AL GG + +++ SLED+++KK+FA + + + A Sbjct: 238 LAAITNVLPRIADALIPGGRAVFMAYQSLEDKIIKKYFAEITTSKTPRGLPMELPEYAAK 297 Query: 285 FQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318 F+ +T+ T ++A N R+ ++RA + Sbjct: 298 FRLVTRGAEKATPAEIADNSRAAPVRVRAIEKLA 331 >gi|330813725|ref|YP_004357964.1| rRNA small subunit methyltransferase H [Candidatus Pelagibacter sp. IMCC9063] gi|327486820|gb|AEA81225.1| rRNA small subunit methyltransferase H [Candidatus Pelagibacter sp. IMCC9063] Length = 333 Score = 309 bits (791), Expect = 6e-82, Method: Composition-based stats. Identities = 108/308 (35%), Positives = 166/308 (53%), Gaps = 8/308 (2%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCG 74 + H PV+L +VI L P I+D TFG GGYS+ + + V+ +DRDP Sbjct: 1 MNPHYPVMLNEVITSLEPRSKTTIVDCTFGCGGYSQKILETFPDCKVVGIDRDPSVQEFA 60 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +K +F FS L++ + + VFD G+SS Q+D DRGFSF + Sbjct: 61 TILEKKFKNRFFFINDKFSNLEEIINKHKDEIGSFVFDFGISSFQLDNHDRGFSFNSNIK 120 Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 LDMRM + ISA +++N+A+++DL I+ I GE+K +IA IV+ R P +TQDL Sbjct: 121 LDMRMGKNKISAYELLNEASLEDLNSIIKIFGEDKDHKKIAKEIVRTRDIKPIHSTQDLC 180 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 + I K +K + +P+T++FQA+R+ VN E+ E+ L K ++ V+FHS Sbjct: 181 NAILKA-KGNKYFKKNPSTKTFQAIRMIVNQELSEIFNSLTRVIKICNPDTIVTAVTFHS 239 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV---FQSITKKVVVPTQEDVAFNRRSRSA 309 LEDR+VKK F IP+ Q + + + P+++++ N RSRSA Sbjct: 240 LEDRIVKKIFNISKDSDQNPSRYIPTTHQEKKETFIQRVNNRALKPSEQEIVSNPRSRSA 299 Query: 310 KLRAGMRT 317 KLR+ + Sbjct: 300 KLRSATKI 307 >gi|88606985|ref|YP_505272.1| S-adenosyl-methyltransferase MraW [Anaplasma phagocytophilum HZ] gi|123495035|sp|Q2GK29|RSMH_ANAPZ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|88598048|gb|ABD43518.1| S-adenosyl-methyltransferase MraW [Anaplasma phagocytophilum HZ] Length = 295 Score = 308 bits (790), Expect = 6e-82, Method: Composition-based stats. Identities = 127/305 (41%), Positives = 180/305 (59%), Gaps = 23/305 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQETM 78 H PVLL +++ LL+P G V +DATFG GGYSR + V+A+D+DP A Q Sbjct: 4 HRPVLLNEMLELLSPKDGAVYVDATFGGGGYSRGILERAKCTVLAIDQDPIASEFYQSLH 63 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + + F + FS+L++ + + GVVFD+GVSSMQ+ DRGFSF K GPLDM Sbjct: 64 SQFPGRVHFFLSKFSRLREALQHFDHNQVDGVVFDVGVSSMQLSDPDRGFSFMKEGPLDM 123 Query: 136 RMS---CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ-SAPFQTTQDL 191 RM SA+ VN + KD+ ++ G E+ + R+ AI+ R+ + + T DL Sbjct: 124 RMDMLRSQSKSAATFVNSLSEKDMADVIFYYGGERLSRRVTRAIISARESNNKIRNTSDL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +I+ V SK N I PATR+FQA+RI+VN+E+EEL GL +A + + GG +IV SFH Sbjct: 184 AKIIRSVVPRSKANPIDPATRTFQAIRIWVNDELEELKAGLEAASQIVGVGGKIIVTSFH 243 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+VK F + K FQ I KK + PT+++++ N RSRSAKL Sbjct: 244 SLEDRIVKHKFNALREKG---------------FQLINKKAIKPTEKEISENTRSRSAKL 288 Query: 312 RAGMR 316 R ++ Sbjct: 289 RGIVK 293 >gi|296125293|ref|YP_003632545.1| S-adenosyl-methyltransferase MraW [Brachyspira murdochii DSM 12563] gi|296017109|gb|ADG70346.1| S-adenosyl-methyltransferase MraW [Brachyspira murdochii DSM 12563] Length = 311 Score = 308 bits (790), Expect = 7e-82, Method: Composition-based stats. Identities = 97/300 (32%), Positives = 168/300 (56%), Gaps = 16/300 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H PV+L++V++ + P K+++DAT G GG++++ + V + +RD + + ++ Sbjct: 20 HTPVMLKEVLSYI-PENAKIVIDATLGEGGHTKAMLDLNLEVHSFERDSTILDIAKRRLK 78 Query: 80 DYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 DY F + T+ ++ + + +K D +++DLGVS +RGFSF+ + LDMR Sbjct: 79 DY-PNFHYYNNTYDKMMECLDEKVIGNADFMLYDLGVSLFHFKKAERGFSFKDNTMLDMR 137 Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 + + SA DV+N + ++L R+ GE A ++A IVK R +T+++L S+I Sbjct: 138 LGINEKSAYDVINGYSEEELERVFRDYGELSNARKMARIIVKERDKRKIETSKELESIIF 197 Query: 197 K-TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 T + +IHPAT FQA+RI VN+E+ L + + + LK G+ +++S+HSLED Sbjct: 198 HNTDKSQRYGKIHPATLVFQAIRIEVNDELNILEKSILNIPNILKNNGVAVIISYHSLED 257 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 R+VK+FF + +F+ + KV +PT +++ N SRSAK+RA Sbjct: 258 RIVKRFFKENEK----------TKNKDGIFKLLNNKVKLPTNDEIKSNPASRSAKMRAVQ 307 >gi|332295500|ref|YP_004437423.1| Ribosomal RNA small subunit methyltransferase H [Thermodesulfobium narugense DSM 14796] gi|332178603|gb|AEE14292.1| Ribosomal RNA small subunit methyltransferase H [Thermodesulfobium narugense DSM 14796] Length = 298 Score = 308 bits (790), Expect = 7e-82, Method: Composition-based stats. Identities = 110/309 (35%), Positives = 172/309 (55%), Gaps = 26/309 (8%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFA 70 +++ H+PVLL +V+ N APGKV++D T GAGG+S +F K G ++ D+D A Sbjct: 3 NYSKDIHIPVLLNEVLENSNLAPGKVVVDGTIGAGGHSFNFLKKILPGGFLLGFDKDIEA 62 Query: 71 VSCGQETMRDYKEQ--FSLFQATFSQL---QDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125 V E + ++ F++F F +++P D DLG+S+MQI +RGF Sbjct: 63 VKLAVEKLSSTFDRNSFTIFNDKFENFVKYLNFLPYGKFDLFFLDLGLSTMQIKESNRGF 122 Query: 126 SFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 SF K LDMRM ++ASD +N A+ +++ + GEE ++ ++A I RR+ P Sbjct: 123 SFMKDEKLDMRMDLKEKMTASDWLNSASEEEMEEVFRKYGEEPKSRKLAKMISLRRREKP 182 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 F++T DL+ L++K + + HPATR FQA+RI +N+EIE L LR A + + G Sbjct: 183 FESTMDLAQLVKKIYPYGRR---HPATRIFQAIRIVINDEIEHLEATLREATNHINSLGR 239 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 +IV+SFHS EDR+VK F + + + ITKK ++ ++ + N Sbjct: 240 IIVISFHSGEDRVVKWTFKNLEKEG--------------RGRVITKKPIIASESETKENP 285 Query: 305 RSRSAKLRA 313 +RSAK+R Sbjct: 286 SARSAKMRV 294 >gi|301633398|gb|ADK86952.1| S-adenosyl-methyltransferase MraW [Mycoplasma pneumoniae FH] Length = 308 Score = 308 bits (790), Expect = 7e-82, Method: Composition-based stats. Identities = 95/307 (30%), Positives = 155/307 (50%), Gaps = 12/307 (3%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQ 75 H VLL++VI LN LD T G GG+S+ + + D D +++ Sbjct: 5 QPHKSVLLDEVIHNLNIKGDGNYLDLTVGFGGHSQHILEQLTTGTLTGNDMDKDSITFCT 64 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E +D K+ L F+ +++ V DG++ DLGVSS Q+D +RGFSF+ +GP Sbjct: 65 ELFKD-KKNVVLVHDNFANFFNHLKQLKVTKFDGILIDLGVSSYQLDKPERGFSFKHAGP 123 Query: 133 LDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 DMRM S +A D++ + + ++LT +L GE IA A+ + TT + Sbjct: 124 FDMRMHQSDRVPTALDILERLSEEELTHVLKKFGEIAHPKPIAKALKTLINNIKNPTTVE 183 Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 ++ ++ F K + + FQA+RI++N E+E L L+ K L G +V+ Sbjct: 184 VAETVKAAASNFEKYKSRNYLAKVFQAIRIYLNRELESLEIVLQHIPKLLNNKGRFLVIV 243 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLE++LV+ + + V + F+ ITKK ++PT++++ N R+RSA Sbjct: 244 FHSLEEKLVRNYIFKLTHFVQPPELPVKLT---PPFELITKKPILPTEQEIKTNPRARSA 300 Query: 310 KLRAGMR 316 KL + Sbjct: 301 KLFVIEK 307 >gi|288574844|ref|ZP_06393201.1| S-adenosyl-methyltransferase MraW [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570585|gb|EFC92142.1| S-adenosyl-methyltransferase MraW [Dethiosulfovibrio peptidovorans DSM 11002] Length = 332 Score = 308 bits (790), Expect = 7e-82, Method: Composition-based stats. Identities = 122/309 (39%), Positives = 178/309 (57%), Gaps = 25/309 (8%) Query: 19 DHVPVLLEKVIALLN-PAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQ 75 +HVPV+LE+V+ L I+DAT G GGYS + G NV +DRDP A++ Sbjct: 4 EHVPVMLEEVLEYLKKTGSSGPIVDATLGLGGYSEAILARIEGVNVFGIDRDPQALTMAS 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + + ++F + FS L+ + D V GVVFDLGVS+MQI +RGFSF+++GP Sbjct: 64 ERLSPFGKRFIPIKGNFSDLKGLLEDIDGIPVGGVVFDLGVSNMQISLPERGFSFRENGP 123 Query: 133 LDMRMSCS--GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQTTQ 189 LDMRM+ G SA+D+V + +L+ I GEE+ A IA +IV+ R+ P + T Sbjct: 124 LDMRMNHEDGGESAADMVRELTAPELSEIFRKYGEERFAWPIAKSIVRYREKSGPIEDTD 183 Query: 190 DLSSLIQKTVYFS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 L +I+K + + + HPA + FQALRI VN E++ L +GL SA + + GG+++V Sbjct: 184 TLVEVIRKALPAPVMRKAKGHPARKVFQALRIAVNKEMDALDEGLNSALEVISPGGVVVV 243 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 VS+HSLEDR+VK F + +TKK +VP+ ++ N +SR Sbjct: 244 VSYHSLEDRIVKWKFRGWKDQGEGT--------------ILTKKALVPSDLEIENNTKSR 289 Query: 308 SAKLRAGMR 316 SAKLRA + Sbjct: 290 SAKLRAFAK 298 >gi|305433210|ref|ZP_07402366.1| S-adenosyl-methyltransferase MraW [Campylobacter coli JV20] gi|304443911|gb|EFM36568.1| S-adenosyl-methyltransferase MraW [Campylobacter coli JV20] Length = 311 Score = 308 bits (790), Expect = 7e-82, Method: Composition-based stats. Identities = 97/302 (32%), Positives = 153/302 (50%), Gaps = 11/302 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76 H+PVLL +V LD T G GG+S S K N+ IA D+D A+ ++ Sbjct: 4 PHIPVLLNEVNQAFEKLNSGYFLDCTLGFGGHSESLLKDHPNLKLIACDQDKEALEFSKK 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + D+K++ + FSQ+ D + ++ G++ D+GVSS Q+D RGF+ L Sbjct: 64 RLHDFKDRTEFVLSNFSQILDQISHDKLNDLKGILADIGVSSYQLDNNKRGFNLHSD-FL 122 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ ISA +++N + L+ I GE IA I + RQ ++ ++L Sbjct: 123 DMRMNQDAKISAFEIINNYTQEQLSDIFKKYGELNDGYFIAQKICQERQKNKIKSAKELY 182 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I KT + + AT FQA+RI VN E+E L L EK +L ++ FHS Sbjct: 183 EIIGKT--KQNHRSVSKATLVFQAIRIEVNQELEVLKNFLEKLEKIKLKNCILAIICFHS 240 Query: 253 LEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 LEDR+VK +F + + + ++ + I+KK + P++E++ N RS AK Sbjct: 241 LEDRIVKNYFKKWAKNCICDERAFRCECGNNHSLGEIISKKAITPSKEEIMINSRSSCAK 300 Query: 311 LR 312 +R Sbjct: 301 MR 302 >gi|157412528|ref|YP_001483394.1| S-adenosyl-methyltransferase MraW [Prochlorococcus marinus str. MIT 9215] gi|262824943|sp|A8G2H7|RSMH_PROM2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|157387103|gb|ABV49808.1| Predicted S-adenosylmethionine-dependent methyltransferase [Prochlorococcus marinus str. MIT 9215] Length = 300 Score = 308 bits (790), Expect = 7e-82, Method: Composition-based stats. Identities = 108/316 (34%), Positives = 176/316 (55%), Gaps = 30/316 (9%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLN----PAPGKV-ILDATFGAGGYSRSFCKMGSNV--I 62 + + +H V+ ++++A L ++ +DAT G GG+S + + S + I Sbjct: 3 TDLSDSSFFNHKSVMTDEIMASLEHYPLIHNNQLKGIDATLGGGGHSFNLLRKYSELNII 62 Query: 63 ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGD 122 LD+DPFA + + ++K + + + F+ D+VP + V V+ DLGV+S QID Sbjct: 63 GLDQDPFARISASKKLDEFKNRIDIRASNFA---DFVPKEKVSFVIADLGVNSNQIDDPK 119 Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI-VKRR 180 RGFSFQK GPLDMRM+ + A ++ N KDL ++ G+E+ + +IA I + + Sbjct: 120 RGFSFQKDGPLDMRMNPLLEVDAEKLIEALNEKDLANLIYKYGDERLSRKIARKIKLDLK 179 Query: 181 QSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 ++ + T++L+ I + +IHPATR+FQALRI VN EIE L + L++ + L Sbjct: 180 ENGKYSGTKELAYSIAGCFPPKQRYKKIHPATRTFQALRIAVNKEIEVLEKFLQAVPEWL 239 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 GG++ ++SFHSLEDRLVK F + +++TKK + P++++ Sbjct: 240 LPGGIISIISFHSLEDRLVKSSFKND-----------------QRLKNLTKKPITPSEQE 282 Query: 300 VAFNRRSRSAKLRAGM 315 V FN+R+RS KLR Sbjct: 283 VEFNKRARSGKLRIAQ 298 >gi|187251661|ref|YP_001876143.1| putative S-adenosylmethionine-dependent methyltransferase [Elusimicrobium minutum Pei191] gi|263447006|sp|B2KE60|RSMH_ELUMP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|186971821|gb|ACC98806.1| putative S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Elusimicrobium minutum Pei191] Length = 293 Score = 308 bits (789), Expect = 9e-82, Method: Composition-based stats. Identities = 106/306 (34%), Positives = 158/306 (51%), Gaps = 26/306 (8%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H+PVL +++ +L V +D T G GG+++ + +I D+D AV + Sbjct: 6 HIPVLTKEIGQMLITDINGVYIDGTLGLGGHTKYLLGLLGKEAKIIGFDKDYNAVKMAEA 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + D + + ++ + D G DGV+ DLG+SS Q+D RGFSF GP Sbjct: 66 NVAD--GRLTAINLSYEAAPKVLKDLKIQGGADGVLLDLGLSSYQLDDASRGFSFMGGGP 123 Query: 133 LDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMR SG +A+DVVN ++L RI GEE A A AIV+ R +TT +L Sbjct: 124 LDMRFDISGQKTAADVVNSYTAEELERIFANYGEETNARNAAAAIVRARVDKKIKTTSEL 183 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++++ + + + H ATR FQALRI VN+E+ + + ++ + LK GG V++FH Sbjct: 184 ANILAPVLP--RRGKTHGATRVFQALRIEVNDELGTVERFIKVLPEVLKPGGRAAVITFH 241 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+VK F S + + + K V+ P E+V NRRSRSAKL Sbjct: 242 SLEDRIVKNIFKQMSAEGE--------------VKLVNKHVIEPEWEEVKNNRRSRSAKL 287 Query: 312 RAGMRT 317 R + Sbjct: 288 RVAEKI 293 >gi|68535817|ref|YP_250522.1| S-adenosyl-methyltransferase MraW [Corynebacterium jeikeium K411] gi|88909195|sp|Q4JWA3|RSMH_CORJK RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|68263416|emb|CAI36904.1| S-adenosyl-methyltransferase [Corynebacterium jeikeium K411] Length = 342 Score = 308 bits (789), Expect = 9e-82, Method: Composition-based stats. Identities = 100/325 (30%), Positives = 172/325 (52%), Gaps = 24/325 (7%) Query: 20 HVPVLLEKVIALLNP------APGK-VILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70 H PV+ ++++ L+ AP + VI+D T GAGG+S +F + V+ LDRDP A Sbjct: 7 HTPVMRDRMVELVGLGVNSENAPARPVIVDGTLGAGGHSEAFLDAFPHAIVVGLDRDPNA 66 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVP-------------DKGVDGVVFDLGVSSMQ 117 ++ + + ++F +Q F + + + + G+ G +FDLGVSSMQ Sbjct: 67 LAEANARLARFGDRFVSYQTRFDGVTEALEDLMEQGKLPASVREHGISGFLFDLGVSSMQ 126 Query: 118 IDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 +D +RGF++ PLDMRM S ++A++++N + ++ RIL G+E+ A +IA A+ Sbjct: 127 LDQPERGFAYAVDAPLDMRMDPSSPLTAAEILNTYSHGEIARILKTYGDERFAGKIASAV 186 Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 V+ R+ PF+ + L L+ T+ + + HPA R+FQALR+ VN E+E L + Sbjct: 187 VREREKQPFENSARLVELLYATIPAASRRTGGHPAKRTFQALRVEVNAELESLENLIPEI 246 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295 + L G + + +S+ SLED++VKK S + A F+ T+ Sbjct: 247 SRWLHVGAVGVFMSYQSLEDKIVKKALVQLSTSKTPPGLPMELPGMEAEFELRTRGAEKA 306 Query: 296 TQEDVAFNRRSRSAKLRAGMRTVER 320 ++ ++ N R+ ++RA R +R Sbjct: 307 SEAEIEQNSRAAPVRVRAYSRVSDR 331 >gi|160902330|ref|YP_001567911.1| S-adenosyl-methyltransferase MraW [Petrotoga mobilis SJ95] gi|262824808|sp|A9BHH9|RSMH_PETMO RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|160359974|gb|ABX31588.1| S-adenosyl-methyltransferase MraW [Petrotoga mobilis SJ95] Length = 286 Score = 308 bits (789), Expect = 9e-82, Method: Composition-based stats. Identities = 105/302 (34%), Positives = 161/302 (53%), Gaps = 30/302 (9%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPFAVSCGQETMRD 80 ++E+V++ + + +D T G GG+ ++ + VI +D D + +E ++D Sbjct: 1 MVEEVLSYMITNKDGIYVDCTAGEGGHIKAILGYTNNKAKVIGVDVDYEVLEIAEERLKD 60 Query: 81 YKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 + L ++++ + + G VDG + DLGVS+ Q+ +RGFSF K PLDMRM Sbjct: 61 LSDNVVLIKSSYKNIDMVLRGLGIDKVDGFLMDLGVSTFQLKGENRGFSFTKDEPLDMRM 120 Query: 138 S-CSGISASDVVNQANVKDLTRILGILGEEK-QASRIAHAIVKRRQSAPFQTTQDLSSLI 195 S A+ +VN + +DL RI+ GEEK A I+ +IVK R P TTQ+L I Sbjct: 121 DVQSEKDAAYIVNNYSQEDLRRIIFEYGEEKRFAHSISKSIVKNR---PINTTQELVDAI 177 Query: 196 QKTVYFSK--NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 +K + S+ H AT++FQALRI VN E++ + + L E LK + V++FHSL Sbjct: 178 RKGLPASQVHERHRHFATKTFQALRIEVNEELKNIEETLSKFESFLKVKARVAVITFHSL 237 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 EDR+VK FF + + +T K ++PTQE++ N RSRSAKLR Sbjct: 238 EDRIVKNFFKNNE-----------------RYNFLTPKPILPTQEEIKHNPRSRSAKLRV 280 Query: 314 GM 315 Sbjct: 281 VE 282 >gi|88909214|sp|Q4FQ05|RSMH_PSYA2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 334 Score = 308 bits (789), Expect = 9e-82, Method: Composition-based stats. Identities = 113/329 (34%), Positives = 173/329 (52%), Gaps = 31/329 (9%) Query: 20 HVPVLLEKVIALL----------------NPAPGKVILDATFGAGGYSRSFCKMGSN--- 60 H VLL++ +A + + + +DATFG GG+SR ++ Sbjct: 10 HDAVLLQEAVAAVLGVKALPKQTDDESQNSLQASGIYVDATFGRGGHSRLLLSQLADNAT 69 Query: 61 VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQ 117 +I D+DP A+ QE + + + +F+ L D + G VDG++ DLG+SS Q Sbjct: 70 LIVFDKDPTAIRVAQE-LASTDSRVQVVHDSFATLTDSLAAMGITQVDGLMADLGISSPQ 128 Query: 118 IDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 ID G RGFSF + G +DMRM S G S ++ + + L +L GEE+ + RIA AI Sbjct: 129 IDDGSRGFSFMRDGAVDMRMDTSRGQSVAEWLETVDDDTLANVLYDFGEERHSRRIARAI 188 Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236 +Q +++T +L+ +I+ + + HPAT+SFQA+RIF+NNE+ ++ L + Sbjct: 189 ---KQMDRYKSTLELAEVIKVAHPNWQRGK-HPATQSFQAMRIFINNELGDVDNFLEQSI 244 Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK-KVVVP 295 LK GG L V+SFHSLEDR +K+F S +P P + +K K V P Sbjct: 245 PILKVGGQLAVISFHSLEDRRIKQFLQRHSKGQYPEDENLP--MPPKRPRYFSKPKRVGP 302 Query: 296 TQEDVAFNRRSRSAKLRAGMRTVERSIED 324 ++ +++ N RSRSA LR RT + D Sbjct: 303 SKAEISNNPRSRSAWLRMATRTDTDYLAD 331 >gi|328873505|gb|EGG21872.1| hypothetical protein DFA_01758 [Dictyostelium fasciculatum] Length = 387 Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats. Identities = 113/323 (34%), Positives = 181/323 (56%), Gaps = 20/323 (6%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRD 67 S+ + G H PV++ +VI L+ G +DATFG GG++ + GS VIA+DRD Sbjct: 48 STLRFNNYGIHKPVMVNEVIDRLHLKDGHCYIDATFGLGGHTLNILDRCKGSFVIAVDRD 107 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD-----GVVFDLGVSSMQIDCGD 122 P + Y+++ FS L + ++G+D GV+ D G SS+Q+D D Sbjct: 108 PKIFELTAKIRETYQDRLITLHGNFSNLSQLLKERGLDTLKISGVLMDFGCSSLQLDSPD 167 Query: 123 RGFSFQKS--GPLDMRMS-----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175 RGFSF+K GPLDMRM+ ++A+D++N + + L I+ GEE+ ++AH Sbjct: 168 RGFSFRKDFDGPLDMRMNNTDTSTQRLTATDILNTFSNQQLRDIMYYYGEERHTLKVAHE 227 Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 I++RRQ + T L +I+ + + + +R F++LR+FVN+E E+ +G+R A Sbjct: 228 IIRRRQYERIEKTSQLVDIIESCIPYP--AAMKSISRIFRSLRMFVNDETGEIYRGMREA 285 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI-TKKVVV 294 EK L GG L+V+SFHS+EDR+ K+FF +R R + H F+ + + + Sbjct: 286 EKILAPGGNLVVISFHSIEDRIAKRFFRNR---CAVKRSTLTPLQHDPSFEYVDGSQPLF 342 Query: 295 PTQEDVAFNRRSRSAKLRAGMRT 317 PT E++ +N RS+ A +R+ RT Sbjct: 343 PTDEEIEWNSRSKPAIVRSATRT 365 >gi|307544543|ref|YP_003897022.1| S-adenosyl-methyltransferase MraW [Halomonas elongata DSM 2581] gi|307216567|emb|CBV41837.1| S-adenosyl-methyltransferase MraW [Halomonas elongata DSM 2581] Length = 318 Score = 307 bits (788), Expect = 1e-81, Method: Composition-based stats. Identities = 121/320 (37%), Positives = 171/320 (53%), Gaps = 16/320 (5%) Query: 9 MSSAIHHTIGD---HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVI 62 MSS H VLL+ + L P LD TFG GG+SR+ + ++ Sbjct: 1 MSSPASEQPSRGFRHASVLLDGAVETLVHDPSGRYLDGTFGRGGHSRAILERLSPQGRLL 60 Query: 63 ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQI 118 A+DRDP A+ QE +F+ + F++L D+ +DG++ D+GVSS Q+ Sbjct: 61 AIDRDPQAI---QEAAAIEDARFAFERGDFARLGDFARAHDLHGKLDGILLDVGVSSPQL 117 Query: 119 DCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177 D +RGFSF + GPLDMRM G SA+ + +A+ ++ R+ GEE+ A R+A AIV Sbjct: 118 DDPERGFSFLRDGPLDMRMDPEHGESAAAWIARADEGEIARVFKTYGEERFARRLARAIV 177 Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 RR F T DL+ +I+ + + HPATR+FQALRI VN E+E+L L +A + Sbjct: 178 ARRGERAFTRTADLAEVIKAAHPAWEKGK-HPATRAFQALRIQVNGELEQLDLALEAALE 236 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS-ITKKVVVPT 296 AL GG L+V+SFHSLEDR VK+F + IP + K PT Sbjct: 237 ALAPGGHLVVISFHSLEDRRVKRFIRDHVRGDTHLPRGIPLRDDQIQRRLEALGKARRPT 296 Query: 297 QEDVAFNRRSRSAKLRAGMR 316 E+V N R+RSA +RA + Sbjct: 297 SEEVEDNPRARSAVMRAARK 316 >gi|310287093|ref|YP_003938351.1| S-adenosyl-methyltransferase MraW [Bifidobacterium bifidum S17] gi|309251029|gb|ADO52777.1| S-adenosyl-methyltransferase MraW [Bifidobacterium bifidum S17] Length = 370 Score = 307 bits (788), Expect = 1e-81, Method: Composition-based stats. Identities = 107/307 (34%), Positives = 159/307 (51%), Gaps = 11/307 (3%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 H PVLLE+ ++L+ PA PG + +D T G G++ +F K V+ +DRD A++ Sbjct: 8 HQPVLLEQCVSLVAPALQDPGSIAVDCTLGLAGHTIAFLKAAPQARVLGIDRDAEALAMA 67 Query: 75 QETMRDYK--EQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQK 129 E + ++F A F + D+G+D V DLG+SS+QID DRGFS+ Sbjct: 68 TERIAGEGLSDRFIPVHAAFDAFGQVLDDQGIDRVNAVFMDLGLSSLQIDETDRGFSYAH 127 Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM S ++A V+ + ++L RI GEE+ + +IA IV+RR P T+ Sbjct: 128 DAPLDMRMDVSQPLTAQRVLAEYPERELVRIFRAYGEERFSRQIAREIVRRRAQEPLTTS 187 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ L+ + V + +PA R FQALRI VN E+++LA L L G L+V Sbjct: 188 AQLNRLVDEVVPQAHRPAGNPAKRVFQALRIEVNGELDKLAGTLPQIACRLAPNGRLVVE 247 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 S+HSLED+ VK F + + F +T+ V +++A N RS S Sbjct: 248 SYHSLEDKTVKSFMNEGLRVDAPADMPVIPDDAQPFFAPLTRGAVQSGPDEIAANPRSAS 307 Query: 309 AKLRAGM 315 +LR Sbjct: 308 VRLRGVE 314 >gi|300780824|ref|ZP_07090678.1| S-adenosyl-methyltransferase MraW [Corynebacterium genitalium ATCC 33030] gi|300532531|gb|EFK53592.1| S-adenosyl-methyltransferase MraW [Corynebacterium genitalium ATCC 33030] Length = 333 Score = 307 bits (788), Expect = 1e-81, Method: Composition-based stats. Identities = 107/317 (33%), Positives = 168/317 (52%), Gaps = 20/317 (6%) Query: 20 HVPVLLEKVIALLNPA-----PGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVS 72 H+PV+ +++ LL PA P VI+D T GAGG++ F VI +DRD A++ Sbjct: 13 HIPVMRDRMGELLRPAVERFGPHAVIVDGTLGAGGHTEYFLDTFPEASVIGIDRDGAALA 72 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD-----------KGVDGVVFDLGVSSMQIDCG 121 E + + ++F+ + F L + + D G+ G FDLGVSSMQ+D Sbjct: 73 QAGERLARFGDRFAPVRGRFDCLAESLRDGTGPVFETVRAHGLAGAFFDLGVSSMQLDQE 132 Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGF+++ PLDMRM S GI+A+DV+N + DL +L G+E+ A +IA A++ R Sbjct: 133 ERGFAYRVDAPLDMRMDPSAGITAADVLNTYSHGDLAHVLKAYGDERFAGKIASAVLDER 192 Query: 181 QSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 + APF T+ L L+ + + + + HPA R+FQALR+ VN E++ L L +AL Sbjct: 193 EKAPFDTSARLVELLYRVIPAATRRTGGHPAKRTFQALRVEVNRELDALTNVLPMVAEAL 252 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 GG + +S+ S ED+LVK+ F + A F+ +T + + Sbjct: 253 GPGGRAVFMSYQSHEDKLVKRAFTEWTTSKTPAGLPTELPGMAAEFRMVTHGAEKASVAE 312 Query: 300 VAFNRRSRSAKLRAGMR 316 V NRR+ ++RA + Sbjct: 313 VEVNRRAAPVRVRAVEK 329 >gi|296269378|ref|YP_003652010.1| S-adenosyl-methyltransferase MraW [Thermobispora bispora DSM 43833] gi|296092165|gb|ADG88117.1| S-adenosyl-methyltransferase MraW [Thermobispora bispora DSM 43833] Length = 327 Score = 307 bits (788), Expect = 1e-81, Method: Composition-based stats. Identities = 118/298 (39%), Positives = 176/298 (59%), Gaps = 10/298 (3%) Query: 17 IGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAV 71 + HVPV+L +V+ LL PA P V++DA G GG++ + K ++I +DRDP A+ Sbjct: 14 VNGHVPVMLGRVLELLAPALTGPDPVLVDANVGLGGHAEALLKAHPALHLIGIDRDPTAI 73 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQ 128 + Y E+ +L A +L + G ++G +FDLG+SS QID RGF++ Sbjct: 74 ERSTARLAPYAERVTLVHAVSDELPTILSRAGRPRINGALFDLGLSSPQIDEAARGFAYS 133 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 PLDMRM ++A+DVVN +V +LTRIL GEE+ A+RIA+AI + R +P T Sbjct: 134 YDAPLDMRMDPGQELTAADVVNGYSVAELTRILREYGEERFAARIANAIARERARSPITT 193 Query: 188 TQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 T+ L+ L++ + + + +PA R+FQALRI VN E+ L + L +A AL GG ++ Sbjct: 194 TKRLADLVRDAIPAATRRTGGNPAKRTFQALRIEVNQELAALERALPAALDALAVGGRVV 253 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 V+++HSLEDRLVK+ A RS + +P AH F+ +TK +P E+VA N Sbjct: 254 VLAYHSLEDRLVKRVLAERSTESGPPGLPVPLEAHLPTFRLLTKGAELPDDEEVARNP 311 >gi|225021917|ref|ZP_03711109.1| hypothetical protein CORMATOL_01949 [Corynebacterium matruchotii ATCC 33806] gi|224945304|gb|EEG26513.1| hypothetical protein CORMATOL_01949 [Corynebacterium matruchotii ATCC 33806] Length = 341 Score = 307 bits (788), Expect = 1e-81, Method: Composition-based stats. Identities = 115/334 (34%), Positives = 178/334 (53%), Gaps = 27/334 (8%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPA------PGKVILDATFGAGGYSRSFCKMGS--N 60 M + +H HVPVL E+V LL PA +ILDAT GAGG+S F N Sbjct: 1 MENTNNH---GHVPVLRERVTELLAPALCNTTTNPPIILDATLGAGGHSEYFLTTFPQVN 57 Query: 61 VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD--------------KGVDG 106 +I LDRD A++ + ++ ++ + F + +G+ G Sbjct: 58 IIGLDRDTTALAQAATRLANFGDRITTLHTRFDDFPTAIQAAADAGNATCQAALTEGISG 117 Query: 107 VVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGE 165 +FDLGVSSMQ+D +RGF+++ PLDMRM+ S GI+A++++N +LTRIL G+ Sbjct: 118 ALFDLGVSSMQLDQVNRGFAYRVDAPLDMRMNNSEGITAAEILNTYPHGNLTRILKTYGD 177 Query: 166 EKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNE 224 E+ AS+IA AI++ R+ APF T+ L L+ T+ + + HPA R+FQALRI VN E Sbjct: 178 ERFASKIATAIIREREHAPFTTSARLVELLYNTIPAATRRTGGHPAKRTFQALRIEVNQE 237 Query: 225 IEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV 284 + + L AL GG + +++ SLED+++KK+FA + I + A Sbjct: 238 LAAITNVLPRIADALIPGGRAVFMAYQSLEDKIIKKYFAEITTSKTPRGLPIELPEYAAK 297 Query: 285 FQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318 F+ +T+ T ++A N R+ ++RA + Sbjct: 298 FRLVTRGAEKATPAEIADNSRAAPVRVRAIEKLA 331 >gi|255558644|ref|XP_002520347.1| s-adenosyl-methyltransferase mraw, putative [Ricinus communis] gi|223540566|gb|EEF42133.1| s-adenosyl-methyltransferase mraw, putative [Ricinus communis] Length = 405 Score = 307 bits (788), Expect = 1e-81, Method: Composition-based stats. Identities = 108/353 (30%), Positives = 167/353 (47%), Gaps = 37/353 (10%) Query: 2 ESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV 61 E + ++ + +HVPVLL +VI + + + +D T GA G+S + K + Sbjct: 53 EKRRTRSDKEFEYKENDNHVPVLLGEVIDVFSSLHLRSFVDCTLGAAGHSSAIIKGHPEL 112 Query: 62 ---IALDRDPFAVSCGQETMRDYKE------QFSLFQATFSQLQDYVPDK-------GVD 105 + +D DP A + + + D + F + F ++ + + GVD Sbjct: 113 ENYVGMDVDPVAHAKARACIDDLMHSHSCHLKVHTFLSNFKHVKPLLAEVDPNFFNSGVD 172 Query: 106 GVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILG 164 ++ DLG+SSMQ++ +RGFS +GPLDMRM + A D++N ++ R+L G Sbjct: 173 AILMDLGMSSMQVNNPERGFSVLANGPLDMRMDPQASLKAEDILNSWPDTEVGRVLREYG 232 Query: 165 EEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNR---IHPATRSFQALRIFV 221 EE + + IV+ R TT DL LI+ + ++ R I ATR FQALRI V Sbjct: 233 EESNWHLLQNKIVQARLRGGLHTTGDLVDLIRNMTHGTRGGRQGWIKTATRVFQALRIAV 292 Query: 222 NNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA- 280 N+E+ L + L + + L GG L V+SFHSLEDR+VK+ F Sbjct: 293 NDELGTLEKTLNACFECLAPGGRLAVISFHSLEDRIVKQTFLKVIETGRGDGDADEEERF 352 Query: 281 ----------------HPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 + +TK+ V P++E+ NRRSRSAKLR + Sbjct: 353 GRDSRNSEEMWIKSVVQGRNGRILTKRPVTPSEEEERLNRRSRSAKLRVVEKV 405 >gi|87123572|ref|ZP_01079423.1| methyltransferase [Synechococcus sp. RS9917] gi|86169292|gb|EAQ70548.1| methyltransferase [Synechococcus sp. RS9917] Length = 305 Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats. Identities = 107/308 (34%), Positives = 161/308 (52%), Gaps = 31/308 (10%) Query: 20 HVPVLLEKVIALLNPAPG-----KVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVS 72 HVPVL + ++ L ++LDAT G GG+SR + ++I LD+D A + Sbjct: 14 HVPVLADVLLQALQEHADPRWQQGLLLDATLGGGGHSRLLLEHYPGLHLIGLDQDSTARA 73 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + E+ + F+ Y P++ V ++ DLGVSS Q+D +RGFSF+ +GP Sbjct: 74 AAAEHLLPCAERVRIVATNFA---TYRPEEPVALLLADLGVSSPQLDVAERGFSFRHNGP 130 Query: 133 LDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTTQ 189 LDMRM+ G +A++++ + DL ++ GEE+ + RIA I + T Sbjct: 131 LDMRMNPEGGGETAAELIARLEESDLADLIYAYGEERLSRRIARRIKADLAAQGAYAGTA 190 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ I + RIHPATR+FQALRI +N+E+ L + L +A L+ GGLL ++ Sbjct: 191 ALAYAIAGCYPPKARRGRIHPATRTFQALRIAINDELGVLDKLLSAAPDWLQPGGLLAII 250 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDR VK F + IT++ +V ++++ N RSRS Sbjct: 251 SFHSLEDRRVKTAF-----------------LQDQRLERITRRPLVASEQEQERNPRSRS 293 Query: 309 AKLRAGMR 316 AKLR R Sbjct: 294 AKLRIARR 301 >gi|257068256|ref|YP_003154511.1| S-adenosyl-methyltransferase MraW [Brachybacterium faecium DSM 4810] gi|256559074|gb|ACU84921.1| S-adenosyl-methyltransferase MraW [Brachybacterium faecium DSM 4810] Length = 331 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 117/317 (36%), Positives = 175/317 (55%), Gaps = 13/317 (4%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 HVPVLL+ + LL PA G V +DAT G GG++ + +++ +DRDP A++ Sbjct: 14 HVPVLLDTSVQLLAPALQDAGAVHVDATLGMGGHAAAVLHAAPRAHLVGIDRDPQALALA 73 Query: 75 QETM--RDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 +E + E+ +L AT+ Q+ + + D G GV+ DLG+SS QID DRGFS+ Sbjct: 74 RERLDREGVGERATLVHATYDQIPEVLEDLGLPGAHGVMMDLGLSSFQIDTADRGFSYAV 133 Query: 130 SGPLDMRMSCS--GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 PLDMRM S G +A+D++ ++ RIL LG+E+ A RIA +V++R+SAP Sbjct: 134 DAPLDMRMDTSSDGPTAADLLRDLPEAEIARILRDLGDERFAKRIARRVVQQRESAPLTR 193 Query: 188 TQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 + +L +L+++ + + K + HPA R+FQALRI VN E+E LA L SA + GG ++ Sbjct: 194 SGELVALLERAIPAASKASGGHPAKRTFQALRIAVNEELEILASALESALDCVHVGGRIV 253 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 V S+HS EDRLVK F R + H F + + + + + N R+ Sbjct: 254 VESYHSGEDRLVKTAFTRRIRSSAPPGLPVELEEHKPTFSPLVRGALQADEHERGSNSRA 313 Query: 307 RSAKLRAGMRTVERSIE 323 S +LRA RT Sbjct: 314 ASVRLRALTRTRPAERA 330 >gi|319760278|ref|YP_004124216.1| S-adenosyl-L-methionine-dependent methyltransferase [Candidatus Blochmannia vafer str. BVAF] gi|318038992|gb|ADV33542.1| S-adenosyl-L-methionine-dependent methyltransferase [Candidatus Blochmannia vafer str. BVAF] Length = 330 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 105/318 (33%), Positives = 174/318 (54%), Gaps = 22/318 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H VLL + I LN P + +D TFG+GG+SR +IA D+D +V G Sbjct: 2 HHKSVLLHEAIEALNIDPSGIYIDGTFGSGGHSRLILSKLTKFGRLIAFDKDHLSVEIG- 60 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +T+ + +FS+ +FS+ +YV + ++G++ DLG+ Q+ +RGFSF K G Sbjct: 61 KTIFNQDSRFSIVHMSFSKAMNYVHNVKLLGSINGILLDLGICENQLFDANRGFSFIKDG 120 Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM +G +A+ + ++ + +T +L LGEE+ +IA +I+ R+ P T + Sbjct: 121 PLDMRMDITTGQTAAQWIAMSSQEHITWVLKNLGEERFCKKIAKSILFHRRIRPIVRTHE 180 Query: 191 LSSLIQKTVYFSKNNR----IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 LS ++ + S+ + HPATRSF A+R+ +N E+E +A+ L+ L G L+ Sbjct: 181 LSKIVSDIIVPSRIKKNSWNKHPATRSFLAIRMHINKELEAIAKVLKDMYNLLSNKGRLV 240 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-------PAVFQSITKKVVVPTQED 299 ++SF+SLEDRLVK F S + + + + F++I K ++PT+++ Sbjct: 241 IISFNSLEDRLVKHFIYKHSRIFPELPKLALTESQIINIFSSSCQFKNIGK--IIPTKQE 298 Query: 300 VAFNRRSRSAKLRAGMRT 317 + N R+RSA LR + Sbjct: 299 IKENIRARSAILRCAEKI 316 >gi|227548905|ref|ZP_03978954.1| S-adenosyl-methyltransferase MraW [Corynebacterium lipophiloflavum DSM 44291] gi|227079033|gb|EEI16996.1| S-adenosyl-methyltransferase MraW [Corynebacterium lipophiloflavum DSM 44291] Length = 345 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 108/317 (34%), Positives = 171/317 (53%), Gaps = 20/317 (6%) Query: 20 HVPVLLEKVIALLNPA-----PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVS 72 HVPV+ +++ LL PA G VI+DAT GAGG++ F + G++VI +DRDP A+ Sbjct: 23 HVPVMRDRMADLLAPAVEVFGAGAVIVDATLGAGGHTEHFLRRFPGASVIGVDRDPAALR 82 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD-----------KGVDGVVFDLGVSSMQIDCG 121 E + + ++F QA F + + D GV G +FDLGVSSMQ+D Sbjct: 83 DATERLAPFADRFVGVQARFDDIGTAIRDRDGAIFDAARTHGVAGALFDLGVSSMQLDQE 142 Query: 122 DRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGF+++ PLDMRM + ++A+DV+N + +L RIL G+E+ A +IA I+K R Sbjct: 143 ERGFAYKVDAPLDMRMDPTTTLTAADVLNTYSHGELARILKTYGDERFAGKIASHILKER 202 Query: 181 QSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 + APF+ + L L+ + + + + HPA R+FQALRI VN E++ L + L Sbjct: 203 EKAPFERSARLVELLYQAIPAATRRTGGHPAKRTFQALRIEVNGELDALRAVIPVITDLL 262 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 GG + +S+ SLED++VK S + + A F+ IT ++ + Sbjct: 263 GPGGRAVFMSYQSLEDKIVKNALTSLTTSTTPTGLPMDLPGTAATFRWITHGAEKASEAE 322 Query: 300 VAFNRRSRSAKLRAGMR 316 + N R+ ++R + Sbjct: 323 IDQNSRAAPVRVRGVEK 339 >gi|326559297|gb|EGE09724.1| S-adenosyl-methyltransferase MraW [Moraxella catarrhalis 7169] gi|326568235|gb|EGE18317.1| S-adenosyl-methyltransferase MraW [Moraxella catarrhalis BC8] gi|326569935|gb|EGE19982.1| S-adenosyl-methyltransferase MraW [Moraxella catarrhalis BC1] gi|326573681|gb|EGE23639.1| S-adenosyl-methyltransferase MraW [Moraxella catarrhalis O35E] Length = 330 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 109/326 (33%), Positives = 175/326 (53%), Gaps = 25/326 (7%) Query: 9 MSSAIH-HTIGDHVPVLLEKVIAL------LNP---APGKVILDATFGAGGYSRSFCKMG 58 MS+ I H VLL + +A+ LN V +DATFG GG+S+ + Sbjct: 1 MSNTISTSDEFSHTTVLLPETVAMVLGVKQLNDVTSKVSGVYVDATFGRGGHSQLLLEYL 60 Query: 59 S---NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLG 112 + + D+DP A++ +++ + + +F+ L + G+D G++ DLG Sbjct: 61 APEATLAVFDKDPEAIAVA-KSLAAQDTRIKVVHDSFAHLTKNLQALGIDKIDGLMADLG 119 Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASR 171 VSS Q+D G RGFSF + G +DMRM + G S+ + + + +L +L GEE+ + + Sbjct: 120 VSSPQLDDGTRGFSFMRDGVVDMRMDTTRGEPVSEWLQRVSADELADVLYEYGEERHSRK 179 Query: 172 IAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQG 231 IA AI + + +T+ L+ +I++ + + HPAT+SFQA+RIF+NNE+ ++ Sbjct: 180 IARAI---KSMQNYTSTRQLAEVIKQAHPAWQKGK-HPATQSFQAMRIFINNELGDVEAF 235 Query: 232 LRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITK 290 L + LKAGG+L V+SFHSLEDRL+K+F S G+ + P F Sbjct: 236 LAQSIGVLKAGGMLAVISFHSLEDRLIKQFLQRHSRGQYEEDARLPIIPKRPKYFGK--P 293 Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMR 316 K + P+ ++V N R+RSA LR +R Sbjct: 294 KRIGPSDQEVKANPRARSAWLRGAVR 319 >gi|266625237|ref|ZP_06118172.1| S-adenosyl-methyltransferase MraW [Clostridium hathewayi DSM 13479] gi|288862867|gb|EFC95165.1| S-adenosyl-methyltransferase MraW [Clostridium hathewayi DSM 13479] Length = 349 Score = 306 bits (785), Expect = 2e-81, Method: Composition-based stats. Identities = 106/331 (32%), Positives = 165/331 (49%), Gaps = 31/331 (9%) Query: 3 SKSCKTMSSAIHH---TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG- 58 K T++ + G H+ + + +++ L PG+ LDAT G GG++R K Sbjct: 32 EKYADTVAKVVSKGSTPAGMHLSICVREILDFLQIKPGQKGLDATLGYGGHTREMLKCLQ 91 Query: 59 --SNVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLG 112 ++ ALD DP ++ +E ++ E ++ Q F+ + + G D V+ DLG Sbjct: 92 SQGHLYALDVDPIELAKTRERLQSQGFGPEILTIIQENFANIDRVAAEVGPFDFVLADLG 151 Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASR 171 VSSMQID DRGFS++ GPLD+R++ GI+A++ + ++L +L +E A Sbjct: 152 VSSMQIDNPDRGFSYKTEGPLDLRLNPEKGITAAERLQTIEEEELRGMLLENADEPYAEE 211 Query: 172 IAHAIVKR-RQSAPFQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEI 225 IA A+V+ R+ P TT L +I+K + K R+FQALRI VN+E Sbjct: 212 IARAVVQEIRRGNPIDTTTRLRQVIEKALSRVPAADRKEAVKKSCQRTFQALRIDVNSEF 271 Query: 226 EELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF 285 E L L L GG + V++FHS EDRLVKK F + V+ Sbjct: 272 EVLYSFLEKLPDVLAPGGRVAVLTFHSGEDRLVKKSFKRLKKEG--------------VY 317 Query: 286 QSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 I +V+ P+ E+ N R+RS K+R ++ Sbjct: 318 SEIADEVIRPSAEECLRNGRARSTKMRWAVK 348 >gi|225375865|ref|ZP_03753086.1| hypothetical protein ROSEINA2194_01497 [Roseburia inulinivorans DSM 16841] gi|225212300|gb|EEG94654.1| hypothetical protein ROSEINA2194_01497 [Roseburia inulinivorans DSM 16841] Length = 355 Score = 306 bits (785), Expect = 2e-81, Method: Composition-based stats. Identities = 107/331 (32%), Positives = 164/331 (49%), Gaps = 31/331 (9%) Query: 3 SKSCKTMSSAI---HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG- 58 K T+ I G H+ +++ ++I L PG+ DAT G G++++ + Sbjct: 37 EKYQDTIEKVIRKGSTPAGMHISIMVREIIDFLQIKPGQTGFDATLGYSGHTKAMLECLK 96 Query: 59 --SNVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLG 112 ++ A D DP + ++ + D + ++ F + + + G D V+ DLG Sbjct: 97 GQGHMYATDVDPIESAKTKKRLADAGFGEDILTIRLQNFCTIDEIAKEAGGFDFVLADLG 156 Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASR 171 VSSMQID DRGFSF+ GPLD+R++ GISA++ + Q + +L +L +E A Sbjct: 157 VSSMQIDNPDRGFSFKVDGPLDLRLNPEKGISAAERLAQIDEDELAGMLWENSDEPYAEE 216 Query: 172 IAHAIVKRRQS-APFQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEI 225 +A AIV R+ P TT L +I++T+ F K+ R+FQALRI VNNE Sbjct: 217 LARAIVTERKHGKPIDTTTRLREVIEETLSFLPEKEKKDTVKKTCQRTFQALRIDVNNEF 276 Query: 226 EELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF 285 E L + + ALK GG +++FHS ED+LVKK V+ Sbjct: 277 EVLYEFMEKLPGALKPGGRAAILTFHSGEDKLVKKALKQ--------------GYKEGVY 322 Query: 286 QSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 I VV P+ E+ A N R+RS K+R +R Sbjct: 323 SEIANDVVRPSAEECAQNGRARSTKMRWAVR 353 >gi|257453541|ref|ZP_05618831.1| S-adenosyl-methyltransferase MraW [Enhydrobacter aerosaccus SK60] gi|257448999|gb|EEV23952.1| S-adenosyl-methyltransferase MraW [Enhydrobacter aerosaccus SK60] Length = 319 Score = 306 bits (785), Expect = 2e-81, Method: Composition-based stats. Identities = 111/317 (35%), Positives = 167/317 (52%), Gaps = 28/317 (8%) Query: 20 HVPVLLEKVIAL-LN----------PAPGKVILDATFGAGGYSRSFC---KMGSNVIALD 65 H VLL++ +A LN +DATFG GG+SR S ++ D Sbjct: 10 HETVLLKETVASVLNVTVAALETGIIKKTGTFVDATFGRGGHSRLLLTYLDKDSRLLVFD 69 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGD 122 +DP A+ Q + + + +F++LQD + G VDG++ DLGVSS Q+D G Sbjct: 70 KDPQAIQTAQA-LAASDARVIVIHDSFAKLQDNLQRLGIEQVDGIMADLGVSSPQLDDGS 128 Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSF + G +DMRM + G S + + + + L +L GEE+ + RIA AI +Q Sbjct: 129 RGFSFMRDGAVDMRMDTTRGESVAQWLKRVDETVLADVLYNYGEERHSRRIARAI---KQ 185 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 + +T L+ I++ + + HPAT+SFQA+RIF+NNE+ ++ L + ALK Sbjct: 186 MEHYDSTLALAETIKQAHPNWQKGK-HPATQSFQAMRIFINNELGDIDSFLAQSLIALKV 244 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV--VVPTQED 299 GG L V+SFHSLEDR++K+F S +P P + ++ K V P + Sbjct: 245 GGRLAVISFHSLEDRIIKQFLQKHSKGQYPEDANLP--MPPKRPKLLS-KPERVAPLATE 301 Query: 300 VAFNRRSRSAKLRAGMR 316 + N R+RSA LR+ R Sbjct: 302 IKTNPRARSALLRSATR 318 >gi|260655421|ref|ZP_05860909.1| S-adenosyl-methyltransferase MraW [Jonquetella anthropi E3_33 E1] gi|260629869|gb|EEX48063.1| S-adenosyl-methyltransferase MraW [Jonquetella anthropi E3_33 E1] Length = 303 Score = 306 bits (785), Expect = 3e-81, Method: Composition-based stats. Identities = 112/317 (35%), Positives = 173/317 (54%), Gaps = 22/317 (6%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDY 81 +L++V+ P +++DAT G GGYS +F V +D+D A + QE + + Sbjct: 1 MLQEVMDSFPRPPVGLVVDATLGLGGYSEAFLSRWPECRVAGIDQDGQARAIAQERLARW 60 Query: 82 KEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138 ++F+++ F +L D + G GVV DLGVS++QI G+RGFSF++ GPLDMRM+ Sbjct: 61 ADRFAVWPGNFRRLNDLMASHGEKEAAGVVVDLGVSNLQITEGERGFSFREDGPLDMRMN 120 Query: 139 CS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK 197 S G++AS +VNQ +L I GEE+ A IA AI +RR + +TT L +I++ Sbjct: 121 ASEGLTASQLVNQMTEDELAGIFFRYGEERFARSIARAIARRRGQSSIETTGQLVEVIRE 180 Query: 198 TVYFSKNNR--IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + + + HPA R FQALRI VN+E+ L L L GG+ + V++HSLED Sbjct: 181 GMPAAAQRKANGHPARRVFQALRIAVNDELGALEDLLSQVCGLLADGGVFVAVTYHSLED 240 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 RLVK+ G+ + + ++++ + P++++V N +SRSA+LRA Sbjct: 241 RLVKRAMREWEGQWLGIP--------------VSRRGLTPSEDEVLSNPKSRSARLRAFE 286 Query: 316 RTVERSIEDDSFVHLPR 332 R IE R Sbjct: 287 RRDNYQIEQGRLGPWRR 303 >gi|260578096|ref|ZP_05846017.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Corynebacterium jeikeium ATCC 43734] gi|258603735|gb|EEW16991.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Corynebacterium jeikeium ATCC 43734] Length = 342 Score = 306 bits (785), Expect = 3e-81, Method: Composition-based stats. Identities = 100/325 (30%), Positives = 172/325 (52%), Gaps = 24/325 (7%) Query: 20 HVPVLLEKVIALLNP------APGK-VILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70 H+PV+ ++++ L+ AP + VI+D T GAGG+S +F + V+ LDRDP A Sbjct: 7 HIPVMRDRMVELVGLGVNSENAPARPVIVDGTLGAGGHSEAFLDAFPHAIVVGLDRDPNA 66 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVP-------------DKGVDGVVFDLGVSSMQ 117 ++ + + ++F +Q F + + + + G+ G +FDLGVSSMQ Sbjct: 67 LAEANARLARFGDRFVSYQTRFDGVTEALEDLMEQGKLPASVREHGISGFLFDLGVSSMQ 126 Query: 118 IDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 +D +RGF++ PLDMRM S ++A++++N + ++ RIL G+E+ A +IA A+ Sbjct: 127 LDQPERGFAYAVDAPLDMRMDPSSPLTAAEILNTYSHGEIARILKTYGDERFAGKIASAV 186 Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 V+ R+ PF+ + L L+ T+ + + HPA R+FQALR+ VN E+E L + Sbjct: 187 VREREKQPFENSARLVELLYATIPAASRRTGGHPAKRTFQALRVEVNAELESLENLIPEI 246 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295 + L G + + +S+ SLED++VKK S + A F+ T Sbjct: 247 SRWLHVGAVGVFMSYQSLEDKIVKKALVQLSTSKTPPGLPMELPGMEAEFELRTSGAEKA 306 Query: 296 TQEDVAFNRRSRSAKLRAGMRTVER 320 ++ ++ N R+ ++RA R +R Sbjct: 307 SEAEIEQNSRAAPVRVRAYSRVSDR 331 >gi|326315562|ref|YP_004233234.1| S-adenosyl-methyltransferase MraW [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372398|gb|ADX44667.1| S-adenosyl-methyltransferase MraW [Acidovorax avenae subsp. avenae ATCC 19860] Length = 311 Score = 306 bits (785), Expect = 3e-81, Method: Composition-based stats. Identities = 112/305 (36%), Positives = 168/305 (55%), Gaps = 17/305 (5%) Query: 26 EKVIALL----NPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETM 78 ++ + L P+P V +DATFG GG+SR + ++A D+DP A+ QE Sbjct: 15 DEAVDALLGGAGPSPAGVWIDATFGRGGHSRRILERLGPQGRLVAFDKDPEAI---QEAA 71 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138 R +FS+ F L + +P++ G++ DLGVSS QID RGFSF+ GPLDMRM Sbjct: 72 RITDARFSIRHEGFRHLAE-LPERSAAGILMDLGVSSPQIDSPGRGFSFRFDGPLDMRMD 130 Query: 139 CS-GISASDVVNQANVKDLTRILGILGEEKQA-SRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 + G S +D + A+V + ++ GEE+ A +R + P +TT +L+ L+ Sbjct: 131 TTRGESVADWLATADVGQIAEVIREYGEERFAGPIAKAIAARRAERGPLRTTSELAQLVA 190 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 V + +PATR+FQALRIF+N E+EEL L ++ + L GG L V+SFHSLEDR Sbjct: 191 GAVKT-REAGQNPATRTFQALRIFINAELEELQAALEASLRVLAPGGRLAVISFHSLEDR 249 Query: 257 LVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 +VK+F A S +V R + P +++ + + P +V N R+RSA +R R Sbjct: 250 IVKQFIAQHSKEVY-DRRAPFAAPQPMRLKALDR--IKPGASEVEANPRARSAVMRVAER 306 Query: 317 TVERS 321 T + Sbjct: 307 TELPA 311 >gi|148240649|ref|YP_001226036.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. WH 7803] gi|262825757|sp|A5GP74|RSMH_SYNPW RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|147849188|emb|CAK24739.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. WH 7803] Length = 305 Score = 306 bits (784), Expect = 3e-81, Method: Composition-based stats. Identities = 112/316 (35%), Positives = 159/316 (50%), Gaps = 31/316 (9%) Query: 15 HTIGDHVPVLLEKVIALLNPAPG-----KVILDATFGAGGYSRSFCKMGS--NVIALDRD 67 + HVPVL + ++ L+ P +++DAT G GG+S +I LD+D Sbjct: 9 DSTFRHVPVLADVLLNALDEEPSVHWQSGLVVDATLGGGGHSSLLLDRYPDLRLIGLDQD 68 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 P A + + +KE+ S+ F+ DY P + V+ DLGVSS Q+D RGFSF Sbjct: 69 PTARAAAATRLSPWKERVSIVATNFA---DYSPPQSASLVLADLGVSSPQLDVAARGFSF 125 Query: 128 QKSGPLDMRMSCS--GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAP 184 + GPLDMRM+ G +A +++ + DL ++ GEE+ + RIA I P Sbjct: 126 RLDGPLDMRMNPESDGETAGELIERMEESDLADLIYAYGEERLSRRIARRIKADLAAQGP 185 Query: 185 FQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 + T + + + RIHPATR+FQALRI VN+E+ L Q L SA L+ GG Sbjct: 186 YAGTASFAYAVAGCYPPKARRGRIHPATRTFQALRIAVNDELGVLDQLLSSAPGWLQPGG 245 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 LL ++SFHSLEDR VK F IT++ +V + E+ N Sbjct: 246 LLAIISFHSLEDRRVKTAFLQDE-----------------RLDRITRRPLVASAEEQERN 288 Query: 304 RRSRSAKLRAGMRTVE 319 RSRSAKLR + E Sbjct: 289 PRSRSAKLRIARKRSE 304 >gi|33239648|ref|NP_874590.1| S-adenosylmethionine-dependent methyltransferase [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|42559452|sp|Q7VE18|RSMH_PROMA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|33237173|gb|AAP99242.1| Predicted S-adenosylmethionine-dependent methyltransferase [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 305 Score = 306 bits (784), Expect = 4e-81, Method: Composition-based stats. Identities = 113/317 (35%), Positives = 165/317 (52%), Gaps = 30/317 (9%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPAPG-----KVILDATFGAGGYSRSFCKMGS--NVI 62 S I + H PVL+ +V+ + P ++DAT G GG+S K ++ Sbjct: 4 ESKIVTSKFKHTPVLVNQVLEAIAKLPSELLIKGKLIDATIGGGGHSALILKGFPSLHIT 63 Query: 63 ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGD 122 LD+DP A+ + + + + + + F+ D+VP + V V+ DLGVSS QID Sbjct: 64 GLDQDPSAIDAASKQLLHFGSRAEIISSNFA---DFVPQEEVAFVLADLGVSSPQIDEAK 120 Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-R 180 RGFSF+ +GPLDMRM+ G+ A +++ + K L ++ GEEK + RIA I + Sbjct: 121 RGFSFRLNGPLDMRMNPKKGLKADELLEKTEEKALADLIYKYGEEKFSRRIARRIKQDLS 180 Query: 181 QSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 + P++ T L+ I +N RIHPATR+FQALRI +NNE++ L L+ A L Sbjct: 181 ANGPYEGTSALAYAIAGCYPPKMRNGRIHPATRTFQALRIAINNELDALQHLLQKAPNWL 240 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 GG+ V+SFHSLEDRLVKK F + + IT+K + + Sbjct: 241 LPGGVFAVISFHSLEDRLVKKSFLTDE-----------------RLERITRKPIQADSNE 283 Query: 300 VAFNRRSRSAKLRAGMR 316 N RSRSAKLR + Sbjct: 284 KLNNPRSRSAKLRLAKK 300 >gi|296113990|ref|YP_003627928.1| S-adenosyl-methyltransferase MraW [Moraxella catarrhalis RH4] gi|295921684|gb|ADG62035.1| S-adenosyl-methyltransferase MraW [Moraxella catarrhalis RH4] Length = 333 Score = 305 bits (783), Expect = 5e-81, Method: Composition-based stats. Identities = 110/327 (33%), Positives = 175/327 (53%), Gaps = 25/327 (7%) Query: 8 TMSSAIH-HTIGDHVPVLLEKVIAL------LNP---APGKVILDATFGAGGYSRSFCKM 57 TMS+ I H VLL + +A+ LN V +DATFG GG+S+ + Sbjct: 3 TMSNTISTSDEFSHTTVLLPETVAMVLGVKQLNDVTSKVSGVYVDATFGRGGHSQLLLEY 62 Query: 58 GS---NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDL 111 + + D+DP A++ +++ + + +F+ L + G+D G++ DL Sbjct: 63 LAPEATLAVFDKDPEAIAVA-KSLAAQDTRIKVVHDSFAHLTKNLQALGIDKIDGLMADL 121 Query: 112 GVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQAS 170 GVSS Q+D G RGFSF + G +DMRM + G S+ + + + +L +L GEE+ + Sbjct: 122 GVSSPQLDDGTRGFSFMRDGVVDMRMDTTRGEPVSEWLQRVSADELADVLYEYGEERHSR 181 Query: 171 RIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQ 230 +IA AI + + +T+ L+ +I++ + + HPAT+SFQA+RIF+NNE+ ++ Sbjct: 182 KIARAI---KSMQNYTSTRQLAEVIKQAHPAWQKGK-HPATQSFQAMRIFINNELGDVEA 237 Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSIT 289 L + LKAGG+L V+SFHSLEDRL+K+F S G+ + P F Sbjct: 238 FLAQSIGVLKAGGMLAVISFHSLEDRLIKQFLQRHSRGQYEEDARLPIIPKRPKYFGK-- 295 Query: 290 KKVVVPTQEDVAFNRRSRSAKLRAGMR 316 K + P ++V N R+RSA LR +R Sbjct: 296 PKRIGPCDQEVKANPRARSAWLRGAVR 322 >gi|93007204|ref|YP_581641.1| methyltransferase [Psychrobacter cryohalolentis K5] gi|92394882|gb|ABE76157.1| methyltransferase [Psychrobacter cryohalolentis K5] Length = 383 Score = 305 bits (783), Expect = 5e-81, Method: Composition-based stats. Identities = 112/329 (34%), Positives = 173/329 (52%), Gaps = 31/329 (9%) Query: 20 HVPVLLEKVIALL----------------NPAPGKVILDATFGAGGYSRSFCKMGSN--- 60 H VLL++ +A + + + +DATFG GG+SR ++ Sbjct: 59 HDAVLLQEAVAAVLGVKALPKQTDDESQNSLQASGIYVDATFGRGGHSRLLLSQLADDAT 118 Query: 61 VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQ 117 +I D+DP A+S +E + + + + +F+ L D + VDG++ DLG+SS Q Sbjct: 119 LIVFDKDPTAISVARE-LANSDSRVKVVHDSFATLTDSLAAMRITQVDGLMADLGISSPQ 177 Query: 118 IDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 ID G RGFSF + G +DMRM S G S ++ + + + L +L GEE+ + RIA AI Sbjct: 178 IDDGSRGFSFMRDGAVDMRMDTSRGQSVAEWLETVDDETLANVLYEFGEERHSRRIARAI 237 Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236 +Q + +T L+ +I+ + + HPAT+SFQA+RIF+NNE+ ++ L + Sbjct: 238 ---KQMDSYDSTLALAEVIKVAHPNWQRGK-HPATQSFQAMRIFINNELGDVDNFLEQSI 293 Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK-KVVVP 295 LK GG L V+SFHSLEDR +K+F S +P P + +K K V P Sbjct: 294 PILKVGGQLAVISFHSLEDRRIKQFLQRHSKGQYPEDENLP--MPPKRPRYFSKPKRVGP 351 Query: 296 TQEDVAFNRRSRSAKLRAGMRTVERSIED 324 ++ +++ N RSRSA LR RT + D Sbjct: 352 SKAEISHNPRSRSAWLRMATRTDADYVAD 380 >gi|229495663|ref|ZP_04389392.1| S-adenosyl-methyltransferase MraW [Porphyromonas endodontalis ATCC 35406] gi|229317433|gb|EEN83337.1| S-adenosyl-methyltransferase MraW [Porphyromonas endodontalis ATCC 35406] Length = 307 Score = 305 bits (782), Expect = 6e-81, Method: Composition-based stats. Identities = 101/309 (32%), Positives = 158/309 (51%), Gaps = 17/309 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H+PVL + + L P V D T G G++ + ++ + DRD A++ Sbjct: 3 HLPVLCREAVEALLTRPNGVYADVTMGGAGHTCEILRHLGEKGHLYSFDRDQDAMANA-- 60 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +F+ + F L ++ GV DGV+ DLGVSS D +RGFSF+ G L Sbjct: 61 ---PVDPRFTFVASDFRYLSRWMRYFGVEHLDGVLADLGVSSHHFDTAERGFSFRFEGAL 117 Query: 134 -DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 DMRM+ +G +A+D++N +V+ L+ + GE K A RIA I K R S ++T + L Sbjct: 118 PDMRMNNRAGRTAADLLNTYSVEALSDLFYYYGELKDARRIAALIEKGRPSTGYRTIESL 177 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++ + R ++ FQALRI VN+E+ L L S L GG L+V+++H Sbjct: 178 LEVLAPVLPPQPPLRRKKLSQLFQALRIEVNDELGALRSLLTSLTSLLAPGGRLVVLTYH 237 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPS----NAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 SLEDRLVK++ G +V P + + + +K ++P+ ++A N R+R Sbjct: 238 SLEDRLVKEWGKGLLGTSQSVEDNDPMAAIYGQKRSEIEVVNRKPILPSDAEIAENPRAR 297 Query: 308 SAKLRAGMR 316 SAK+R R Sbjct: 298 SAKMRILQR 306 >gi|260435603|ref|ZP_05789573.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. WH 8109] gi|260413477|gb|EEX06773.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. WH 8109] Length = 294 Score = 305 bits (782), Expect = 6e-81, Method: Composition-based stats. Identities = 110/305 (36%), Positives = 162/305 (53%), Gaps = 28/305 (9%) Query: 20 HVPVLLEKVIALLN--PAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQ 75 H PVL + V+ P P +++DAT G GG+S + +I LD+D A + Sbjct: 6 HEPVLADAVLDAARQIPRPDGLLIDATLGGGGHSARLLQQHPSLRLIGLDQDATARAAAA 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 E + + + S+ F+ DYVP + V+ DLGVSS Q+D +RGFSF+ GPLDM Sbjct: 66 ERLAPFGARVSIVATNFA---DYVPPEPAVMVLADLGVSSPQLDVAERGFSFRLDGPLDM 122 Query: 136 RMSCSGI--SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTTQDLS 192 RM+ SG +A++++++ +L ++ GEE+ + RIA I + ++ T L+ Sbjct: 123 RMNASGEGETAAELIDRLEENELADLIYGYGEERLSRRIARRIKADLKDKGSYEGTAALA 182 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + + RIHPATR+FQALRI VN+E+ L + L+ A L+ GLL ++SFH Sbjct: 183 YAVAGCYPPKARRGRIHPATRTFQALRIAVNDELGVLDRLLQQAPDWLEPEGLLGIISFH 242 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR VK F + IT+K VV T+++ N RSRSAKL Sbjct: 243 SLEDRRVKTAF-----------------LRDERLKRITRKPVVATEQEEEANPRSRSAKL 285 Query: 312 RAGMR 316 R R Sbjct: 286 RVAQR 290 >gi|296122349|ref|YP_003630127.1| S-adenosyl-methyltransferase MraW [Planctomyces limnophilus DSM 3776] gi|296014689|gb|ADG67928.1| S-adenosyl-methyltransferase MraW [Planctomyces limnophilus DSM 3776] Length = 298 Score = 305 bits (781), Expect = 8e-81, Method: Composition-based stats. Identities = 121/316 (38%), Positives = 176/316 (55%), Gaps = 34/316 (10%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75 H+PV+L +VI L PG V+ D T GAGG+SR K + ++A DRDP +S + Sbjct: 1 MHLPVMLREVIQQLQLEPGLVVADGTLGAGGHSREILKAIGSAGMLLAFDRDPMMISLAE 60 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG--------VDGVVFDLGVSSMQIDCGDRGFSF 127 +T+ E + Q ++ ++D + VD ++ DLG SS Q+ +RGFSF Sbjct: 61 KTV--CGENVHIHQGSYIDIRDVLQRHTQATGRPPLVDRLLLDLGYSSDQLADRERGFSF 118 Query: 128 QKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 Q GPLD+R S S +SA+ + AN ++ R+L GEE A R+ AI + Q Sbjct: 119 QTEGPLDLRFSTSENVSAAHWLATANDSEIVRVLTEFGEEPFADRLGPAIGLAARRGELQ 178 Query: 187 TTQDLSSLIQKTVYFS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRS-AEKALKAGG 243 TT+DL ++++TV + +N HPATR FQALRI VN+E+ ++ L A + L GG Sbjct: 179 TTKDLVRVVEQTVPPAILRNAEKHPATRVFQALRIQVNDELTHVSTMLNQIAPEVLAPGG 238 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 ++ V++FHSLEDRLVK+ F ++ V+Q +T K +VPT ++ FN Sbjct: 239 IMAVITFHSLEDRLVKQAFRQKN-----------------VWQELTDKPLVPTPAEIRFN 281 Query: 304 RRSRSAKLRAGMRTVE 319 RSRSAKLR R E Sbjct: 282 PRSRSAKLRIARRIAE 297 >gi|222824174|ref|YP_002575748.1| S-adenosyl-methyltransferase MraW [Campylobacter lari RM2100] gi|263447001|sp|B9KD58|RSMH_CAMLR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|222539396|gb|ACM64497.1| S-adenosyl-methyltransferase MraW [Campylobacter lari RM2100] Length = 305 Score = 305 bits (781), Expect = 8e-81, Method: Composition-based stats. Identities = 95/302 (31%), Positives = 158/302 (52%), Gaps = 9/302 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQE 76 H+PVLL++V+ + LD T G GG+S++ + +IA D+D A++ +E Sbjct: 4 PHIPVLLQEVLDAFDDFDSGDFLDCTLGYGGHSKALLQAHEKLRLIACDKDLEALNFSKE 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 ++ ++++ S F + +P + + G++ D+GVSS+Q+D DRGFS LDMR Sbjct: 64 FLKKFQDRISFNHIGFKDILTQIPTQNLRGILADIGVSSLQLDKNDRGFSLNSD-FLDMR 122 Query: 137 MSCSGI-SASDVVNQANVKDLTRILGILGEE-KQASRIAHAIVKRRQSAPFQTTQDLSSL 194 M + + SA +VVN + + L +I G+ AS + I+ R + ++LS + Sbjct: 123 MDQNNLLSAKEVVNSYSKEALEQIFKDYGDLAPVASMLTQKIINARSQKEITSAKELSQI 182 Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 I +N + A FQALRI VNNE+ EL L + EKA L ++SFHSLE Sbjct: 183 IGNAKLKGRN--VSLALLVFQALRIEVNNELGELKSLLENIEKAKLKDCKLAIISFHSLE 240 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHP--AVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 DR+VK F + I ++ + ++KK + ++E++++N RS AK+R Sbjct: 241 DRIVKNTFKRWEKDCICDERAIKCECGKGHSLGKILSKKAISASKEEISYNSRSSCAKMR 300 Query: 313 AG 314 Sbjct: 301 IF 302 >gi|13508054|ref|NP_110003.1| SAM-dependent methytransferase [Mycoplasma pneumoniae M129] gi|2496335|sp|P75466|RSMH_MYCPN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|1674216|gb|AAB96169.1| SAM-dependent methytransferase [Mycoplasma pneumoniae M129] Length = 308 Score = 305 bits (781), Expect = 8e-81, Method: Composition-based stats. Identities = 95/307 (30%), Positives = 154/307 (50%), Gaps = 12/307 (3%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQ 75 H VLL++VI LN LD T G GG+S+ + + D D +++ Sbjct: 5 QPHKSVLLDEVIHNLNIKGDGNYLDLTVGFGGHSQHILEQLTTGTLTGNDMDKDSITFCT 64 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E +D K+ L F+ +++ V DG++ DLGVSS Q+D +RGFSF+ +GP Sbjct: 65 ELFKD-KKNVVLVHDNFANFFNHLKQLKVTKFDGILIDLGVSSYQLDKPERGFSFKHAGP 123 Query: 133 LDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 DMRM S +A D++ + + ++LT +L GE IA A+ + TT + Sbjct: 124 FDMRMHQSDRVPTALDILERLSEEELTHVLKKFGEIAHPKPIAKALKTLINNTKNPTTVE 183 Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 ++ ++ F K + + FQA+RI++N E+E L L+ K L G +V+ Sbjct: 184 VAETVKAAASNFEKYKSRNYLAKVFQAIRIYLNRELESLEIVLQHIPKLLNNKGRFLVIV 243 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLE++LV+ + + V + F+ ITKK ++PT++++ N R RSA Sbjct: 244 FHSLEEKLVRNYIFKLTHFVQPPELPVKLT---PPFELITKKPILPTEQEIKTNPRVRSA 300 Query: 310 KLRAGMR 316 KL + Sbjct: 301 KLFVIEK 307 >gi|120609507|ref|YP_969185.1| S-adenosyl-methyltransferase MraW [Acidovorax citrulli AAC00-1] gi|263433318|sp|A1TKC3|RSMH_ACIAC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|120587971|gb|ABM31411.1| S-adenosyl-methyltransferase MraW [Acidovorax citrulli AAC00-1] Length = 311 Score = 305 bits (781), Expect = 9e-81, Method: Composition-based stats. Identities = 112/305 (36%), Positives = 167/305 (54%), Gaps = 17/305 (5%) Query: 26 EKVIALL----NPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETM 78 ++ + L PAP V +DATFG GG+SR + ++A D+DP A+ Sbjct: 15 DEAVDALLGGAGPAPAGVWIDATFGRGGHSRRILERLGPDGRLVAFDKDPEAIHEA---A 71 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138 R +FS+ F L D +P++ G++ DLGVSS QID +RGFSF+ GPLDMRM Sbjct: 72 RITDARFSIRHEGFRHLAD-LPERSAAGILMDLGVSSPQIDSPERGFSFRFDGPLDMRMD 130 Query: 139 CS-GISASDVVNQANVKDLTRILGILGEEKQA-SRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 + G S +D + A+V + ++ GEE+ A +R + P +TT +L+ L+ Sbjct: 131 TTRGESVADWLATADVGQIAEVIREYGEERFAGPIAKAIAARRAERGPLRTTSELAQLVA 190 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 V + +PATR+FQALRIF+N E+EEL L ++ + L GG L V+SFHSLEDR Sbjct: 191 GAVKT-REAGQNPATRTFQALRIFINAELEELQAALEASLRVLAPGGRLAVISFHSLEDR 249 Query: 257 LVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 +VK+F A S +V R + P +++ + + P +V N R+RSA +R R Sbjct: 250 IVKQFIAQHSREVY-DRRAPFAAPQPMRLKALDR--IKPGACEVDANPRARSAVMRVAER 306 Query: 317 TVERS 321 T + Sbjct: 307 TEVPA 311 >gi|88811846|ref|ZP_01127099.1| S-adenosyl-methyltransferase [Nitrococcus mobilis Nb-231] gi|88790730|gb|EAR21844.1| S-adenosyl-methyltransferase [Nitrococcus mobilis Nb-231] Length = 303 Score = 304 bits (780), Expect = 9e-81, Method: Composition-based stats. Identities = 110/303 (36%), Positives = 157/303 (51%), Gaps = 13/303 (4%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRD 80 LLE I L V +D TFG GG++ + K G + +D+DP A+S Q+ Sbjct: 2 LLEAAIDALRIQANGVYVDGTFGCGGHAAAILKRLATGGRLGLIDKDPSAISRAQQKFAA 61 Query: 81 YKEQFSLFQATFSQLQDYVPDKGV----DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + + ++++L GV DGV+ DLG SS Q+D RGFSF + GPLDMR Sbjct: 62 -DARCFIHHGSYAELGVLADTCGVRGRIDGVLLDLGASSPQLDEARRGFSFLRDGPLDMR 120 Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M S G+SA+ + + ++ ++ GEE+ A RIA AI RQ+ T + + Sbjct: 121 MDPSKGVSAAAWLADTPLSEIESVIRRYGEERYARRIAQAIDASRQAGRLPQTTGALAAL 180 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + HPATRSFQA+RI +N+E+EEL L L GG L+V+SFHSLED Sbjct: 181 IAAAVPRREVGKHPATRSFQAIRIAINDELEELRCFLAGICDLLCPGGRLVVISFHSLED 240 Query: 256 RLVKKFFASRS--GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 RLVK+F S G + ++ + P + + K V P E++ N R+RSA LR Sbjct: 241 RLVKRFMRDHSRIGDLPPGIPIVAHSMRPRLRRPA--KPVRPGAEEIRVNPRARSAVLRV 298 Query: 314 GMR 316 R Sbjct: 299 TER 301 >gi|260587648|ref|ZP_05853561.1| S-adenosyl-methyltransferase MraW [Blautia hansenii DSM 20583] gi|260541913|gb|EEX22482.1| S-adenosyl-methyltransferase MraW [Blautia hansenii DSM 20583] Length = 349 Score = 304 bits (780), Expect = 1e-80, Method: Composition-based stats. Identities = 100/331 (30%), Positives = 162/331 (48%), Gaps = 31/331 (9%) Query: 3 SKSCKTMSSAIHH---TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---K 56 K T+ I G H+ + +++++ L PG++ LDAT G GG+S + Sbjct: 32 EKYADTIEKVIQKGGTPAGMHISICVQEILDFLQIQPGQIGLDATLGYGGHSSKMLGCLE 91 Query: 57 MGSNVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLG 112 ++ ALD DP + +E + + ++ Q F+ + + G D V+ DLG Sbjct: 92 GKGHLYALDVDPIEIKKTKERLEKMDYKEDILTIKQMNFADVDQLKEEAGGFDFVLADLG 151 Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASR 171 VSSMQID +RGF+++ GPLD+R++ GISA++ + + +L +L +E A Sbjct: 152 VSSMQIDNPERGFTYKFEGPLDLRLNPEKGISAAERLKDISQPELEGMLIENSDEPYAKE 211 Query: 172 IAHAIV-KRRQSAPFQTTQDLSSLIQKT---VYFSKNNR--IHPATRSFQALRIFVNNEI 225 I++ I+ + R+ P TT L ++K + + R+FQALRI VN+E Sbjct: 212 ISNTIISEIRRGNPITTTTQLQKAVEKALVRIPEKERKEMVKKSCARTFQALRIDVNSEF 271 Query: 226 EELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF 285 E L + L G + +++FHS EDRLVKK F V+ Sbjct: 272 EVLEAFMEKLPTVLNKGARVAILTFHSGEDRLVKKAFQRF--------------YREGVY 317 Query: 286 QSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 I+K V+ P+ E+ A N RSRS K+R ++ Sbjct: 318 SEISKDVIRPSAEECARNSRSRSTKMRWAIK 348 >gi|167043610|gb|ABZ08304.1| putative MraW methylase family protein [uncultured marine microorganism HF4000_APKG2M17] Length = 314 Score = 304 bits (780), Expect = 1e-80, Method: Composition-based stats. Identities = 102/313 (32%), Positives = 164/313 (52%), Gaps = 16/313 (5%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69 + + H PVL VI L + +D T G GG++ + V+A+DRD Sbjct: 1 MSYASQYHEPVLCNTVIQGLVSRTDGIYVDGTLGGGGHTAALLDALDSSGRVVAIDRDDD 60 Query: 70 AVSCGQETMRD--YKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRG 124 A+ + + + ++ + F+ ++ + + G V G + DLGVSS QID RG Sbjct: 61 AIRETSKRLSPDLASGRLTVLKGNFADVKLLLAEAGIAKVTGFLLDLGVSSHQIDEAGRG 120 Query: 125 FSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 FS +K GPLDMRM S G+ A+++VNQ +V++L R+L GE+ R ++ Sbjct: 121 FSHRKDGPLDMRMDRSQGVDANELVNQLDVEELARLLRRFGEQP---RSGRIARAIIRAR 177 Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 P T+DLS LI+ + + +R FQA RI VN E++ L + L +E ++ G Sbjct: 178 PLSGTEDLSRLIRDLAPRGQEAK--TLSRVFQAFRIAVNEELDALDRVLLDSEAIMEVGA 235 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 L V+S+HSLEDR VK++ S + + R + + P ++ IT+K ++ + ++ N Sbjct: 236 RLAVISYHSLEDRRVKRYMRSGNLEGEVQRDVFGNQITP--WRMITRKPIMADEAEIRDN 293 Query: 304 RRSRSAKLRAGMR 316 RSRSA+LR R Sbjct: 294 PRSRSARLRIVER 306 >gi|226320608|ref|ZP_03796168.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi 29805] gi|226234027|gb|EEH32748.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi 29805] Length = 296 Score = 304 bits (780), Expect = 1e-80, Method: Composition-based stats. Identities = 98/305 (32%), Positives = 170/305 (55%), Gaps = 24/305 (7%) Query: 20 HVPVLLEKV---IALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 H PVLL+ + I L + +D+T G G ++++ + +++ ++RDP + Sbjct: 7 HFPVLLDAICKLIEDLPVKSDLIYIDSTLGEGVHAKAILEKYDFLSLVGIERDPQILERA 66 Query: 75 QETMRDYKEQFSLFQATFSQLQ-DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ + ++E+ + F F +Y + + ++ DLG+S +GFSF + PL Sbjct: 67 RQFLSIFEERITYFNDWFDNFFVNYPLNVKANFILVDLGISMFHYKGSKKGFSFLEDEPL 126 Query: 134 DMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 DMR+ S ISA+++VN + DL ++ L E + RI+ AIV+ R+ +TT++L Sbjct: 127 DMRLCSSSCKISAAEIVNTYSKYDLEALIYDLSNEYYSRRISKAIVEYRKIKKIETTKEL 186 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 S+I K FSK +I+PAT++FQALRI+VN+E+ L + L + L G+L +++FH Sbjct: 187 QSIISKVYPFSKV-KINPATKTFQALRIYVNDELARLKRSLPFWVENLAKDGILAIITFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 S+EDR+VK FF S S ++ I+KK ++P+ +++ N+ SRSAKL Sbjct: 246 SIEDRIVKDFFRSLSCD---------------LYAKISKKPIMPSFDEIKKNKPSRSAKL 290 Query: 312 RAGMR 316 R + Sbjct: 291 RVIKK 295 >gi|195941340|ref|ZP_03086722.1| hypothetical protein Bbur8_00460 [Borrelia burgdorferi 80a] gi|224533199|ref|ZP_03673799.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi WI91-23] gi|224511926|gb|EEF82327.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi WI91-23] gi|312148089|gb|ADQ30748.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi JD1] Length = 296 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 98/305 (32%), Positives = 170/305 (55%), Gaps = 24/305 (7%) Query: 20 HVPVLLEKV---IALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 H PVLL+ + I L + +D+T G G ++++ + +++ ++RDP + Sbjct: 7 HFPVLLDAICKLIEDLPVKSDLIYIDSTLGEGVHAKAILEKYDFLSLVGIERDPQILERA 66 Query: 75 QETMRDYKEQFSLFQATFSQLQ-DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ + ++E+ + F F +Y + + ++ DLG+S +GFSF + PL Sbjct: 67 RQFLSIFEERITYFNDWFDNFFVNYPLNVKANFILVDLGISMFHYKGSKKGFSFLEDEPL 126 Query: 134 DMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 DMR+ S ISA+++VN + DL ++ L E + RI+ AIV+ R+ +TT++L Sbjct: 127 DMRLCSSSCKISAAEIVNTYSKYDLEALIYDLSNEHYSRRISKAIVEYRKIKKIETTKEL 186 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 S+I K FSK +I+PAT++FQALRI+VN+E+ L + L + L G+L +++FH Sbjct: 187 QSIISKVYPFSKV-KINPATKTFQALRIYVNDELTRLKRSLPFWVENLAKDGILAIITFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 S+EDR+VK FF S S ++ I+KK ++P+ +++ N+ SRSAKL Sbjct: 246 SIEDRIVKDFFRSLSCD---------------LYAKISKKPIMPSFDEIKKNKPSRSAKL 290 Query: 312 RAGMR 316 R + Sbjct: 291 RVIKK 295 >gi|254819736|ref|ZP_05224737.1| S-adenosyl-methyltransferase MraW [Mycobacterium intracellulare ATCC 13950] Length = 321 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 113/313 (36%), Positives = 177/313 (56%), Gaps = 18/313 (5%) Query: 22 PVLLEKVIALLNPA-----PGKV---ILDATFGAGGYSRSFCKMGS--NVIALDRDPFAV 71 PVLLE+ +ALL PA P ++DAT GAGG++ F +I LDRDP A+ Sbjct: 2 PVLLERCVALLTPALTRHHPDGTGATLVDATVGAGGHAERFLTELPGLRLIGLDRDPTAL 61 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSSMQIDCGDRGF 125 + + + ++ +L + + + + + G VDG++FDLGVSSMQ+D +RGF Sbjct: 62 DITRTRLARFSDRVTLVRTRYDGVATALAESGYAATESVDGMLFDLGVSSMQLDRAERGF 121 Query: 126 SFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 ++ + PLDMRM ++A+D++N + +L IL GEE+ A RIA IV+RR P Sbjct: 122 AYAQDAPLDMRMDPDAPLTAADILNTYDETELANILHRYGEERFARRIAAHIVRRRARQP 181 Query: 185 FQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 F +T DL +L+ + + + + HPA R+FQALR+ VN+E++ L L +A AL GG Sbjct: 182 FASTADLVALLYEAIPAAARRTGGHPAKRTFQALRVAVNDELDSLRAALPAALDALAVGG 241 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 ++V+++ SLEDR+VK+ FA V + H F+++T+ ++ N Sbjct: 242 RIVVMTYQSLEDRIVKRLFAEAVASRTPVDLPVELPGHQPRFRALTQGAGRADATEIERN 301 Query: 304 RRSRSAKLRAGMR 316 RS + +LRA R Sbjct: 302 PRSAAVRLRALQR 314 >gi|291563183|emb|CBL41999.1| S-adenosyl-methyltransferase MraW [butyrate-producing bacterium SS3/4] Length = 360 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 103/337 (30%), Positives = 162/337 (48%), Gaps = 31/337 (9%) Query: 3 SKSCKTMSSAI---HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG- 58 K T+ I G H+ + + +++ L+ PG LDAT G GG++ K Sbjct: 36 EKYADTVEKVIKKGSTPAGMHISICVNEILDFLDIRPGMQGLDATLGYGGHTTEMLKKLE 95 Query: 59 --SNVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLG 112 ++ LD DP + + +++ + ++ Q F+ + VP+ G D V+ DLG Sbjct: 96 GQGHMYGLDVDPIEIVKTKARLKERGFDEDILTVKQMNFADIDKLVPETGLFDFVLADLG 155 Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASR 171 VSSMQID +RGF+++ GPLD+R++ GISA++ + Q +++++ + +E A Sbjct: 156 VSSMQIDNPERGFTYKADGPLDLRLNPEKGISAAERLKQMDMEEIAGMFVENSDEPYAEE 215 Query: 172 IAHAIVKR-RQSAPFQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEI 225 IA I KR R+ +TT L +I+ T+ F K R FQALRI VN E Sbjct: 216 IAREIAKRNRKRQYIETTTGLKEVIETTLSFIPEKERKEAVKKSCQRCFQALRIDVNQEF 275 Query: 226 EELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF 285 E L L L GG +++FHS EDRLVK +F + + Sbjct: 276 EVLESFLTKLPGILAPGGRAAILTFHSGEDRLVKYYFKEGKKDGL--------------Y 321 Query: 286 QSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSI 322 + V+ P+ E+ N R+RS K+R +R E S Sbjct: 322 SDVANDVIRPSAEECQRNPRARSTKMRWAIREGENSH 358 >gi|119953105|ref|YP_945314.1| S-adenosyl-methyltransferase MraW [Borrelia turicatae 91E135] gi|263447569|sp|A1QZA2|RSMH_BORT9 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|119861876|gb|AAX17644.1| S-adenosyl-methyltransferase MraW [Borrelia turicatae 91E135] Length = 297 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 106/308 (34%), Positives = 168/308 (54%), Gaps = 24/308 (7%) Query: 20 HVPVLLEKVIALL---NPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCG 74 H+PVLLE++I LL N + G V +D T G GG+S + K N VI +DRD ++ Sbjct: 6 HIPVLLEEIINLLEASNISDGFVFVDCTLGEGGHSSAVLKKYQNINVIGIDRDDVVLNRA 65 Query: 75 QETMRDYKEQFSLFQATFSQL-QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +E++ ++K + S F F +Y ++ ++ DLG+S RGFSF + L Sbjct: 66 KESLIEFKGRVSYFNTWFDDFFSEYPLSSKINFILADLGISMFHYKMSGRGFSFFEDERL 125 Query: 134 DMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 DMR+ G+SA D++N + K L ++ L E+ + RI +I++ R+ +T ++L Sbjct: 126 DMRLYPGAGGLSAYDIINTFDKKRLENLIYELSGERYSRRIVKSILEYRKIKKIETPREL 185 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++ K K +I+PAT++FQALRI+VN+E+ L + L ++L G+L +V+FH Sbjct: 186 QDIVSKAYPRIKL-KINPATKTFQALRIYVNDELFRLKRSLPLWVESLSNNGVLAIVTFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLED++VK+FF S +TKK ++P E+ FN SRSAKL Sbjct: 245 SLEDKIVKEFFKGLSKDQYC---------------ILTKKPIMPRCEEKRFNSASRSAKL 289 Query: 312 RAGMRTVE 319 R + E Sbjct: 290 RVIKKLYE 297 >gi|225848381|ref|YP_002728544.1| S-adenosyl-methyltransferase MraW [Sulfurihydrogenibium azorense Az-Fu1] gi|262825703|sp|C1DTV7|RSMH_SULAA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|225643386|gb|ACN98436.1| S-adenosyl-methyltransferase MraW [Sulfurihydrogenibium azorense Az-Fu1] Length = 293 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 108/305 (35%), Positives = 168/305 (55%), Gaps = 22/305 (7%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76 +H VL +V+ +DAT G GG+S K + I +D+D +A+ +E Sbjct: 3 EHYSVLHREVLEFTKDLKEGYFIDATVGGGGHSYLILKQNPKLKIIGVDKDDYALEVAKE 62 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++D++ +FSL +++F + V D V+ G++FD GVS Q+ RGFSFQ+ PL Sbjct: 63 RLKDFEGRFSLVKSSFKDIDKIVKDLDVNPVVGILFDFGVSHFQLKLP-RGFSFQREEPL 121 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S ++A VVN L I+ GEEK A RIA IV+ R+ +TT++L+ Sbjct: 122 DMRMDTSSELTAYYVVNYYPESRLFNIISKYGEEKFAKRIAKNIVEYRKKKKIETTKELA 181 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++ ++ + +++RIHPAT++FQA+RI VNNE+ E+ + L A + G++I +SFH Sbjct: 182 DIVYRSYPPNLRHSRIHPATKTFQAIRIEVNNELLEIEEALEKAIHIVSKEGIIITISFH 241 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR+VK F +TKK + P ++++ N SRSAK+ Sbjct: 242 SLEDRIVKNTFKKYK--------------ELKFLDILTKKPITPKEDEIRENPASRSAKM 287 Query: 312 RAGMR 316 R R Sbjct: 288 RVARR 292 >gi|216264839|ref|ZP_03436831.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi 156a] gi|218249331|ref|YP_002374829.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi ZS7] gi|221217744|ref|ZP_03589212.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi 72a] gi|224533715|ref|ZP_03674303.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi CA-11.2a] gi|225550125|ref|ZP_03771085.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi 118a] gi|226321624|ref|ZP_03797150.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi Bol26] gi|226709919|sp|B7J1N4|RSMH_BORBZ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|215981312|gb|EEC22119.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi 156a] gi|218164519|gb|ACK74580.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi ZS7] gi|221192421|gb|EEE18640.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi 72a] gi|224513008|gb|EEF83371.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi CA-11.2a] gi|225369237|gb|EEG98690.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi 118a] gi|226232813|gb|EEH31566.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi Bol26] Length = 296 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 98/305 (32%), Positives = 170/305 (55%), Gaps = 24/305 (7%) Query: 20 HVPVLLEKV---IALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 H PVLL+ + I L + +D+T G G ++++ + +++ ++RDP + Sbjct: 7 HFPVLLDAICKLIEDLPVKSDLIYIDSTLGEGVHAKAILEKYDFLSLVGIERDPQILERA 66 Query: 75 QETMRDYKEQFSLFQATFSQLQ-DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ + ++E+ + F F +Y + + ++ DLG+S +GFSF + PL Sbjct: 67 RQFLSIFEERITYFNDWFDNFFVNYPLNVKANFILVDLGISMFHYKGSKKGFSFLEDEPL 126 Query: 134 DMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 DMR+ S ISA+++VN + DL ++ L E + RI+ AIV+ R+ +TT++L Sbjct: 127 DMRLCSSSCKISAAEIVNTYSKYDLEALIYDLSNEHYSRRISKAIVEYRKIKKIETTKEL 186 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 S+I K FSK +I+PAT++FQALRI+VN+E+ L + L + L G+L +++FH Sbjct: 187 QSIISKVYPFSKV-KINPATKTFQALRIYVNDELARLKRSLPFWVENLAKDGILAIITFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 S+EDR+VK FF S S ++ I+KK ++P+ +++ N+ SRSAKL Sbjct: 246 SIEDRIVKDFFRSLSCD---------------LYAKISKKPIMPSFDEIKKNKPSRSAKL 290 Query: 312 RAGMR 316 R + Sbjct: 291 RVIKK 295 >gi|146328861|ref|YP_001209878.1| S-adenosyl-methyltransferase MraW [Dichelobacter nodosus VCS1703A] gi|167011832|sp|A5EY11|RSMH_DICNV RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|146232331|gb|ABQ13309.1| S-adenosyl-methyltransferase MraW [Dichelobacter nodosus VCS1703A] Length = 308 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 111/311 (35%), Positives = 168/311 (54%), Gaps = 15/311 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVS 72 +H+PVLL + +A L AP LDATFG GG+S + ALDRD A + Sbjct: 2 ETSEHIPVLLAEAVAALEIAPNGRYLDATFGRGGHSSEILAQLGESGQLYALDRDQQAAA 61 Query: 73 CGQETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 + +F + FS+++ + + +DG++FDLGVSS Q+D RGFSF K Sbjct: 62 VAAQI---TDPRFHFARCAFSEMETAFAALGAESLDGILFDLGVSSPQLDDPSRGFSFAK 118 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQA--SRIAHAIVKRRQSAPFQ 186 GPLDMRM ++A + + LT ++ G E RIA AI+ + + Sbjct: 119 EGPLDMRMDNEQNLTAQKWLKNVDEDTLTTVIRDYGGEPHTVAKRIAKAILAAKND--LK 176 Query: 187 TTQDLSSLIQKTVYFSKNN-RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 +T DL+S++ + +HPAT++FQA+RI VN+EI E+ + LR+A LK+GG+L Sbjct: 177 STLDLASVVAQARPKKLYKPHLHPATQTFQAIRIAVNDEIGEIQRALRAATMMLKSGGIL 236 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 +V+SFH LED VK+F S G+ + + + + V+ P+ ++A N R Sbjct: 237 VVISFHGLEDATVKRFVRSMEGEPLPAEIPATNTTNIHQVLRLVPPVIKPSSAEIAQNPR 296 Query: 306 SRSAKLRAGMR 316 SRSAKLR ++ Sbjct: 297 SRSAKLRKAVK 307 >gi|15594651|ref|NP_212440.1| hypothetical protein BB0306 [Borrelia burgdorferi B31] gi|8134806|sp|O51286|RSMH_BORBU RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|2688161|gb|AAC66643.1| conserved hypothetical protein [Borrelia burgdorferi B31] gi|312149012|gb|ADQ29083.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi N40] Length = 296 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 98/305 (32%), Positives = 170/305 (55%), Gaps = 24/305 (7%) Query: 20 HVPVLLEKV---IALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 H PVLL+ + I L + +D+T G G ++++ + +++ ++RDP + Sbjct: 7 HFPVLLDAICKLIEDLPVKSDLIYIDSTLGEGVHAKAILEKYDFLSLVGIERDPQILERA 66 Query: 75 QETMRDYKEQFSLFQATFSQLQ-DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ + ++E+ + F F +Y + + ++ DLG+S +GFSF + PL Sbjct: 67 RQFLSIFEERITYFNDWFDNFFVNYPLNVKANFILVDLGISMFHYKGSKKGFSFLEDEPL 126 Query: 134 DMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 DMR+ S ISA+++VN + DL ++ L E + RI+ AIV+ R+ +TT++L Sbjct: 127 DMRLCSSSCKISAAEIVNTYSKYDLEALIYDLSNEHYSRRISKAIVEYRKIKKIETTKEL 186 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 S+I K FSK +I+PAT++FQALRI+VN+E+ L + L + L G+L +++FH Sbjct: 187 QSIISKVYPFSKV-KINPATKTFQALRIYVNDELARLKRSLPFWVENLAKDGILAIITFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 S+EDR+VK FF S S ++ I+KK ++P+ +++ N+ SRSAKL Sbjct: 246 SIEDRIVKDFFRSLSCD---------------LYAKISKKPIMPSFDEIKKNKPSRSAKL 290 Query: 312 RAGMR 316 R + Sbjct: 291 RVVKK 295 >gi|223888788|ref|ZP_03623379.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi 64b] gi|223885604|gb|EEF56703.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi 64b] Length = 296 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 97/305 (31%), Positives = 170/305 (55%), Gaps = 24/305 (7%) Query: 20 HVPVLLEKV---IALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 H PVLL+ + I L + +D+T G G ++++ + +++ ++RDP + Sbjct: 7 HFPVLLDAICKLIEDLPVKSDLIYIDSTLGEGVHAKAILEKYDFLSLVGIERDPQILERA 66 Query: 75 QETMRDYKEQFSLFQATFSQLQ-DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ + ++E+ + F F +Y + + ++ DLG+S +GFSF + PL Sbjct: 67 RQFLSIFEERITYFNDWFDNFFVNYPLNVKANFILVDLGISMFHYKGSKKGFSFLEDEPL 126 Query: 134 DMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 DMR+ S ISA+++VN + DL ++ L E + +I+ AIV+ R+ +TT++L Sbjct: 127 DMRLCSSSCKISAAEIVNTYSKYDLEALIYDLSNEHYSRKISKAIVEYRKIKKIETTKEL 186 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 S+I K FSK +I+PAT++FQALRI+VN+E+ L + L + L G+L +++FH Sbjct: 187 QSIISKVYPFSKV-KINPATKTFQALRIYVNDELARLKRSLPFWVENLAKDGILAIITFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 S+EDR+VK FF S S ++ I+KK ++P+ +++ N+ SRSAKL Sbjct: 246 SIEDRIVKDFFRSLSCD---------------LYAKISKKPIMPSFDEIKKNKPSRSAKL 290 Query: 312 RAGMR 316 R + Sbjct: 291 RVVKK 295 >gi|326567260|gb|EGE17380.1| S-adenosyl-methyltransferase MraW [Moraxella catarrhalis 12P80B1] gi|326572872|gb|EGE22857.1| S-adenosyl-methyltransferase MraW [Moraxella catarrhalis CO72] Length = 330 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 109/326 (33%), Positives = 174/326 (53%), Gaps = 25/326 (7%) Query: 9 MSSAIH-HTIGDHVPVLLEKVIAL------LNP---APGKVILDATFGAGGYSRSFCKMG 58 MS+ I H VLL + +A+ LN V +DATFG GG+S+ + Sbjct: 1 MSNTISTSDEFSHTTVLLPETVAMVLGVKQLNDVTSKVSGVYVDATFGRGGHSQLLLEYL 60 Query: 59 S---NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLG 112 + + D+DP A++ +++ + + +F+ L + G+D G++ DLG Sbjct: 61 APEATLAVFDKDPEAIAVA-KSLAAQDTRIKVVHDSFAHLTKNLQALGIDKIDGLMADLG 119 Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASR 171 VSS Q+D G RGFSF + G +DMRM + G S+ + + + +L +L GEE+ + + Sbjct: 120 VSSPQLDDGTRGFSFMRDGVVDMRMDTTRGEPVSEWLQRVSADELADVLYEYGEERHSRK 179 Query: 172 IAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQG 231 IA AI + + +T+ L+ +I++ + + HPAT+SFQA+RIF+NNE+ ++ Sbjct: 180 IARAI---KSMQNYTSTRQLAEVIKQAHPAWQKGK-HPATQSFQAMRIFINNELGDVEAF 235 Query: 232 LRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITK 290 L + LKAGG+L V+SFHSLEDRL+K+F S G+ + P F Sbjct: 236 LAQSIGVLKAGGMLAVISFHSLEDRLIKQFLQRHSRGQYEEDARLPIIPKRPKYFGK--P 293 Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMR 316 K + P ++V N R+RSA LR +R Sbjct: 294 KRIGPCDQEVKANPRARSAWLRGAVR 319 >gi|87300864|ref|ZP_01083706.1| methyltransferase [Synechococcus sp. WH 5701] gi|87284735|gb|EAQ76687.1| methyltransferase [Synechococcus sp. WH 5701] Length = 299 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 113/306 (36%), Positives = 166/306 (54%), Gaps = 26/306 (8%) Query: 17 IGDHVPVLLEKVIALLNPAPG-KVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSC 73 DH+PVL V+A PG +LD T G GG+S +I LD+DP A++ Sbjct: 4 TFDHLPVLAAAVVAGFTDLPGEGTLLDVTVGGGGHSALLLAAHPGLRLIGLDQDPAALAA 63 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 E + + ++ +L + F+ +Y P + + GV+ DLGVSS Q+D +RGFSF+ GPL Sbjct: 64 AAERLEPFADRVTLVPSNFA---NYAPSEPLVGVLADLGVSSPQLDRPERGFSFRLDGPL 120 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ-SAPFQTTQDL 191 DMRM+ G +A++++++ KDL ++ GEE+ + RIA IV+ R + T L Sbjct: 121 DMRMNSAEGETAAELMDRVEEKDLADLIYAYGEERLSRRIARRIVEARPWHGSSRGTAAL 180 Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 + L+ ++ RIH ATR+FQALRI VN+E+ L + L +A L GGL V+SF Sbjct: 181 AYLVAGCYPPKARHGRIHAATRTFQALRIAVNDELGALERLLHNAPDWLMPGGLFGVISF 240 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDR VK F + + +T+K VV +++ N RSRSAK Sbjct: 241 HSLEDRRVKAAFLADD-----------------RLERLTRKPVVADEQEAERNPRSRSAK 283 Query: 311 LRAGMR 316 R R Sbjct: 284 FRLARR 289 >gi|262831581|sp|Q1Q846|RSMH_PSYCK RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 342 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 112/329 (34%), Positives = 173/329 (52%), Gaps = 31/329 (9%) Query: 20 HVPVLLEKVIALL----------------NPAPGKVILDATFGAGGYSRSFCKMGSN--- 60 H VLL++ +A + + + +DATFG GG+SR ++ Sbjct: 18 HDAVLLQEAVAAVLGVKALPKQTDDESQNSLQASGIYVDATFGRGGHSRLLLSQLADDAT 77 Query: 61 VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQ 117 +I D+DP A+S +E + + + + +F+ L D + VDG++ DLG+SS Q Sbjct: 78 LIVFDKDPTAISVARE-LANSDSRVKVVHDSFATLTDSLAAMRITQVDGLMADLGISSPQ 136 Query: 118 IDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 ID G RGFSF + G +DMRM S G S ++ + + + L +L GEE+ + RIA AI Sbjct: 137 IDDGSRGFSFMRDGAVDMRMDTSRGQSVAEWLETVDDETLANVLYEFGEERHSRRIARAI 196 Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236 +Q + +T L+ +I+ + + HPAT+SFQA+RIF+NNE+ ++ L + Sbjct: 197 ---KQMDSYDSTLALAEVIKVAHPNWQRGK-HPATQSFQAMRIFINNELGDVDNFLEQSI 252 Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK-KVVVP 295 LK GG L V+SFHSLEDR +K+F S +P P + +K K V P Sbjct: 253 PILKVGGQLAVISFHSLEDRRIKQFLQRHSKGQYPEDENLP--MPPKRPRYFSKPKRVGP 310 Query: 296 TQEDVAFNRRSRSAKLRAGMRTVERSIED 324 ++ +++ N RSRSA LR RT + D Sbjct: 311 SKAEISHNPRSRSAWLRMATRTDADYVAD 339 >gi|311103994|ref|YP_003976847.1| methyltransferase [Achromobacter xylosoxidans A8] gi|310758683|gb|ADP14132.1| S-adenosyl-methyltransferase MraW [Achromobacter xylosoxidans A8] Length = 364 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 119/350 (34%), Positives = 182/350 (52%), Gaps = 36/350 (10%) Query: 19 DHVPVLLEKVIALLNP----------------------APGKVILDATFGAGGYSRSFCK 56 +H PVLLE + L A V +D TFG GG+SR Sbjct: 4 EHRPVLLEPTVDALLLPDFGGKGATRSHQQAGPATATRAEDGVFVDGTFGRGGHSRELLG 63 Query: 57 MGS---NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFD 110 ++ D+DP A++ + ++ F+ + + + G VDGV+ D Sbjct: 64 RLGKAARLVVFDKDPEAIAVANAL-AAADPRVTVVHGGFATMAEELEQLGIGKVDGVMLD 122 Query: 111 LGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQA 169 LGVSS QID +RGFSF + GPLDMRM + G + +D + QA+V ++ ++ GEE+ A Sbjct: 123 LGVSSPQIDDAERGFSFMRDGPLDMRMDTTRGPTVADWLAQASVDEMREVIADYGEERFA 182 Query: 170 SRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELA 229 ++A AI RR + P +TT +L+ + V ++ HPATR+FQALRI++N E+EELA Sbjct: 183 FQVAKAIAARRATRPLRTTLELAECVASAV-RTREKGQHPATRTFQALRIYINRELEELA 241 Query: 230 QGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQS 287 + L +A L GG L V+SFHSLEDR+VK+ A+ + A + S V +S Sbjct: 242 RTLAAALDLLAPGGRLAVISFHSLEDRMVKQCIAAAARPAAAHARLPLRESEMPQPVLRS 301 Query: 288 ITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDDSFVHLPRLPTLS 337 + + V+ ++V+ N R+RSA LR RT E + + ++ +L Sbjct: 302 LGR--VLAEDDEVSANARARSAVLRVAERT-ETPLPAEGGFAFVKIGSLP 348 >gi|154148181|ref|YP_001406384.1| S-adenosyl-methyltransferase MraW [Campylobacter hominis ATCC BAA-381] gi|171769702|sp|A7I1J3|RSMH_CAMHC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|153804190|gb|ABS51197.1| S-adenosyl-methyltransferase MraW [Campylobacter hominis ATCC BAA-381] Length = 310 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 92/308 (29%), Positives = 156/308 (50%), Gaps = 15/308 (4%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIAL--DRDPFAVSCGQE 76 H+PVL +V+ + +++D T G G+S + N+ D+D A+ ++ Sbjct: 4 PHIPVLRNEVVDIFKDLQ-GLLIDCTLGFAGHSSAILSANENIRIFACDKDDEALDFSKK 62 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK------GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + +K + +F++ FS ++ V G++ D+GVSS+QID DRGFS + Sbjct: 63 RVEIFKNRIKIFKSGFSNFLPFLETNEILNLSNVVGILADIGVSSLQIDNNDRGFSLKSD 122 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM + + A VVN + DL RI E A +IA I R + + Sbjct: 123 A-LDMRMDKNASLDAKFVVNHYSRSDLERIFYEFAELTNAKQIAAKIANYRADKEITSAK 181 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 +L+++I + + KN I AT +FQA+RI VN E++EL + L S E + + +++ Sbjct: 182 ELATIIGTSNF--KNRSISTATLAFQAIRIEVNKELDELNKLLDSIENSAIQNAKIAIIT 239 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 FHSLED++VK F + + + A+ + +TKK + + +++ N R++ Sbjct: 240 FHSLEDKIVKNRFKKWAQSCICPPFFERCECGNNHAIGKILTKKPITASADELKQNSRAK 299 Query: 308 SAKLRAGM 315 SAKLR Sbjct: 300 SAKLRVFE 307 >gi|283780728|ref|YP_003371483.1| S-adenosyl-methyltransferase MraW [Pirellula staleyi DSM 6068] gi|283439181|gb|ADB17623.1| S-adenosyl-methyltransferase MraW [Pirellula staleyi DSM 6068] Length = 318 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 111/338 (32%), Positives = 170/338 (50%), Gaps = 41/338 (12%) Query: 1 MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-- 58 M S T ++ T HV V+ ++I L P+ G ++LD T GAGG++R + Sbjct: 1 MSDSSSPTDQASPATTQPIHVSVMPREIIEWLRPSAGSILLDGTLGAGGHTRLLAEAIDA 60 Query: 59 ---------------SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG 103 V++ DRD A++ + ++ L A F +L + + G Sbjct: 61 AENLAKSTGNTQFSPGYVLSSDRDEAALARAEVHLKGLP--VKLVHANFCELPSVLEELG 118 Query: 104 VDGV---VFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRI 159 V GV V DLG+SS Q+ RGFSF +G LD+R S G A ++ + +++ I Sbjct: 119 VTGVQGCVLDLGLSSDQLADDARGFSFDATGELDLRFDTSTGDPAWKLLEKLREEEIANI 178 Query: 160 LGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRI 219 + GEE+ + RIA I ++R P +T +L+ ++++ V + +I PATR+FQALRI Sbjct: 179 IYQFGEERLSRRIARKICEQRIIKPIRTADELARIVRRCVPRG-DGKIDPATRTFQALRI 237 Query: 220 FVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSN 279 VN E++ L + L + L GG L ++SFHSLEDRLVK+ F S Sbjct: 238 AVNGELDALKKALEKIPECLAPGGRLAIISFHSLEDRLVKEAFRSD-------------- 283 Query: 280 AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 ++TKK + +++A N RSRSAKLR R Sbjct: 284 ---LRLNNLTKKPLTALDDELASNPRSRSAKLRVAERV 318 >gi|163814931|ref|ZP_02206319.1| hypothetical protein COPEUT_01082 [Coprococcus eutactus ATCC 27759] gi|158449870|gb|EDP26865.1| hypothetical protein COPEUT_01082 [Coprococcus eutactus ATCC 27759] Length = 348 Score = 303 bits (777), Expect = 2e-80, Method: Composition-based stats. Identities = 100/331 (30%), Positives = 162/331 (48%), Gaps = 31/331 (9%) Query: 3 SKSCKTMSSAIHH---TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG- 58 K T+ I G H+ + + +++ PG+ LDAT G GG++ + Sbjct: 30 EKYADTIEKVISKGSTPAGMHISICVNEILDFFQIQPGQQGLDATLGYGGHTMRMLEQLH 89 Query: 59 --SNVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLG 112 ++ ALD DP + ++ + D + ++ Q F + + G D ++ DLG Sbjct: 90 GEGHMYALDVDPIEIVKTKQRLADAGYGEDILTIKQTNFRNIDKVAEEAGKFDFILADLG 149 Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASR 171 VSSMQID DRGF+++ GPLD+R+ G SA++ + + + ++L + +E A Sbjct: 150 VSSMQIDNPDRGFTYKFDGPLDLRLDPEKGESAAERLREVSYEELVGMFQENSDEPYAEE 209 Query: 172 IAHAIVKR-RQSAPFQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEI 225 IA I+KR R +TT + I++ + F K R FQALRI VN+E Sbjct: 210 IATVIMKRNRTKNYVETTIQMKEAIEEALSFVPEKERKEAVKKSCQRCFQALRIDVNSEF 269 Query: 226 EELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF 285 E L L AL+ GG + +++FHS EDRLVK+ F + A V+ Sbjct: 270 EVLYDFLDKLPDALRPGGRVAILTFHSGEDRLVKRAFK--------------AGAKAGVY 315 Query: 286 QSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 ++K V+ P+ E+ A N R+RS K+R ++ Sbjct: 316 SEVSKDVIRPSAEECARNPRARSTKMRWAVK 346 >gi|187918180|ref|YP_001883743.1| S-adenosyl-methyltransferase MraW [Borrelia hermsii DAH] gi|263445877|sp|B2S017|RSMH_BORHD RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|119861028|gb|AAX16823.1| S-adenosyl-methyltransferase MraW [Borrelia hermsii DAH] Length = 297 Score = 303 bits (777), Expect = 2e-80, Method: Composition-based stats. Identities = 101/308 (32%), Positives = 164/308 (53%), Gaps = 24/308 (7%) Query: 20 HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCG 74 H PVLL+++I LL G + +D T G GG+S + + N VI ++RD ++ Sbjct: 6 HTPVLLDEIINLLEIVYVNDGFIFVDCTLGEGGHSSAVLRKYQNISVIGIERDDIILNRA 65 Query: 75 QETMRDYKEQFSLFQATFSQL-QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +E + ++K + S F A F +Y + ++ DLG+S RGFSF + L Sbjct: 66 KEFLVEFKGKVSYFNAWFDDFFSEYSLSSKANFILADLGISMFHYKMSGRGFSFFEDERL 125 Query: 134 DMRMSCS--GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 DMR++ G+SA D+VN + L ++ G E + RI +I++ R+ +T+++L Sbjct: 126 DMRLNPGAGGLSAYDIVNTFDKVRLENLIYEFGGEHYSKRIVSSILEYRKIKKIKTSREL 185 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I K K +I+PAT++FQALRI+VN+E+ L + L +L G+L +++FH Sbjct: 186 QGIISKAYPRIKL-KINPATKTFQALRIYVNDELFRLKRSLPLWVGSLSRNGILAIITFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLED++VK+FF S + +TKK ++ + E+ N SRSAKL Sbjct: 245 SLEDKIVKEFFKGLSKEQYC---------------ILTKKPIIASFEEKRCNNASRSAKL 289 Query: 312 RAGMRTVE 319 RA + E Sbjct: 290 RAIRKLYE 297 >gi|94498181|ref|ZP_01304742.1| S-adenosyl-methyltransferase [Sphingomonas sp. SKA58] gi|94422311|gb|EAT07351.1| S-adenosyl-methyltransferase [Sphingomonas sp. SKA58] Length = 312 Score = 303 bits (777), Expect = 2e-80, Method: Composition-based stats. Identities = 131/319 (41%), Positives = 193/319 (60%), Gaps = 13/319 (4%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83 LL++V+ L APG++ +D TFGAGGYS + + G+ V A DRDP A+ G+ + Sbjct: 2 LLDEVLDALAIAPGEIHVDGTFGAGGYSSAMAQAGARVFAFDRDPDAIREGRAVADAHG- 60 Query: 84 QFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS 140 +L FS++ + ++ VD GV D+GVSSMQ+D +RGFSFQ GPLDM MS Sbjct: 61 -ITLIPGEFSRMAQLLTERDVDRVAGVTLDIGVSSMQLDRPERGFSFQSDGPLDMTMSQG 119 Query: 141 GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVY 200 G+SA+D +N A +D+ ++ GEE ++ R+A AIV R P + T L+++++K + Sbjct: 120 GMSAADFLNSAPEEDIADVIYRYGEEPRSRRVARAIVDAR---PLERTAQLAAVVRKALG 176 Query: 201 FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKK 260 + +++ PATR+FQA+RI VN E+EEL +GL +AE L+ GG L +V+FHSLEDR+VK+ Sbjct: 177 YKPHDKKDPATRTFQAIRIHVNRELEELERGLEAAEALLEEGGRLAIVTFHSLEDRIVKQ 236 Query: 261 FFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319 F +RS G+ RH+ A P + K V ++A N R+RSA LR+ +RT Sbjct: 237 FLRNRSGGEGGGSRHLPERTAGPQPTFARPAKAVRAGDAELARNPRARSATLRSAVRTAA 296 Query: 320 RSIEDDSFVHLPRLPTLSQ 338 S P LP S+ Sbjct: 297 PSR----LSLAPSLPRSSR 311 >gi|198282533|ref|YP_002218854.1| S-adenosyl-methyltransferase MraW [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665162|ref|YP_002424723.1| S-adenosyl-methyltransferase MraW [Acidithiobacillus ferrooxidans ATCC 23270] gi|263433385|sp|B5ELD1|RSMH_ACIF5 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263433699|sp|B7J3W0|RSMH_ACIF2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|198247054|gb|ACH82647.1| S-adenosyl-methyltransferase MraW [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517375|gb|ACK77961.1| S-adenosyl-methyltransferase MraW [Acidithiobacillus ferrooxidans ATCC 23270] Length = 321 Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats. Identities = 123/318 (38%), Positives = 170/318 (53%), Gaps = 14/318 (4%) Query: 12 AIHHTIGDHVPVLLEKVIALLNPA----PGKVILDATFGAGGYSRSFCKMG---SNVIAL 64 + + HV VLL + I L PA +DAT G GG+S + ++ L Sbjct: 3 SANEPDATHVAVLLAETIVALRPALHTGAAVRCVDATGGRGGHSAALLAELGAADTLLIL 62 Query: 65 DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCG 121 DRDP A++ + + + QA FSQL + + + VD ++ DLGVSS Q+D Sbjct: 63 DRDPSAIAALRARFAQ-DSRVYIRQARFSQLAEVLAALEWERVDAILADLGVSSPQLDEA 121 Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 RGFSF + GPLDMRM + SA++ + A D+TR+L GEE+ A IA AI++ R Sbjct: 122 ARGFSFLRDGPLDMRMDPGADRSAAEWLATATEADMTRVLREYGEERFARPIARAILRAR 181 Query: 181 QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 + AP T L+ LI + + HPATRSFQ +RIF+N E+EEL L A AL+ Sbjct: 182 EQAPITRTLQLAELIAQVLP-RHETGQHPATRSFQGIRIFINRELEELEAFLPQAMNALR 240 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300 AGG L V+SFHSLEDRLVK+FF + ++ A + S P + K + + Sbjct: 241 AGGRLAVISFHSLEDRLVKRFFRADDYRISADVPLRASELPPLPWHP-AGKALRAGPRET 299 Query: 301 AFNRRSRSAKLRAGMRTV 318 N RSRSA LR R+ Sbjct: 300 RDNPRSRSAVLRVAERSE 317 >gi|291551135|emb|CBL27397.1| S-adenosyl-methyltransferase MraW [Ruminococcus torques L2-14] Length = 359 Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats. Identities = 97/318 (30%), Positives = 165/318 (51%), Gaps = 29/318 (9%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70 + G H+ +++ +++ L PG+ DAT G GG++++ + ++ A D DP Sbjct: 54 NTPAGMHISIMVNEILDFLKIQPGETGFDATLGYGGHTKAMLERLKGEGHIYATDVDPEE 113 Query: 71 VSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFS 126 + ++ + D + S+ F + + + G D ++ DLGVSSMQID RGFS Sbjct: 114 SAKTRKRLADQGFGEDILSIRLQNFCTIDEIAKEVGGFDFILADLGVSSMQIDNPKRGFS 173 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV-KRRQSAP 184 F+ +GPLD+R++ GISA++ ++ + ++L +L +E +A AI + R+ Sbjct: 174 FKVNGPLDLRLNQEKGISAAERLDNISEEELAGMLYENSDEPYCEELAKAITTEIRKGNR 233 Query: 185 FQTTQDLSSLIQKTVYFSKNNR------IHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 TT L ++I+KT+ F NN+ R+FQALRI VNNE E L + + A Sbjct: 234 IDTTTKLRNVIEKTLDFLPNNKEKKDIIKKTCQRTFQALRIDVNNEFEVLYEFMEKLPGA 293 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 LK GG + +++FHS ED+LVKK + ++ + VV P+ + Sbjct: 294 LKPGGRVAILTFHSGEDKLVKKALK--------------AGYKEGIYSEYARDVVRPSAQ 339 Query: 299 DVAFNRRSRSAKLRAGMR 316 + A N R+RS K+R ++ Sbjct: 340 ECAQNGRARSTKMRWAVK 357 >gi|195444651|ref|XP_002069965.1| GK11803 [Drosophila willistoni] gi|194166050|gb|EDW80951.1| GK11803 [Drosophila willistoni] Length = 368 Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats. Identities = 127/349 (36%), Positives = 178/349 (51%), Gaps = 38/349 (10%) Query: 1 MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--G 58 + K + SS+ HVPVL E I LNP LD TFGAGG++R Sbjct: 25 LRPKYARQTSSS------PHVPVLCEVAIEYLNPKRNGNYLDMTFGAGGHTRRLLDTCSD 78 Query: 59 SNVIALDRDPFAVSCGQETM--RDYKEQFSLFQATFSQLQDYVPDKG-----VDGVVFDL 111 V ALDRDP A E +YK + FS L + + DG+++D Sbjct: 79 CKVYALDRDPLAHQLAIEMSQKEEYKGRLVPLFGKFSDLPQLLDGQNLSRNSFDGMLYDF 138 Query: 112 GVSSMQIDCGDRGFSFQKSGPLDMRMSCSG---ISASDVVNQANVKDLTRILGILGEEKQ 168 G SSMQ D +RGFS ++GPLDMRM ISA+DV+ +A DL RIL + GEEK Sbjct: 139 GCSSMQFDVANRGFSISQNGPLDMRMDGGRGGGISAADVLARAEEDDLARILRVYGEEKA 198 Query: 169 ASRIAHAIVKRR-QSAPFQTTQDLSSLIQKTVYFSKNNR------IHPATRSFQALRIFV 221 A +IA AIV+ R +TT+ L+ L+ + S + + H AT++FQALRIFV Sbjct: 199 AKKIARAIVEARGALQRIETTKQLADLVAAVLGDSSHRQDKLQRPSHAATKTFQALRIFV 258 Query: 222 NNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH 281 NNE+ E+ G+ A + L G L+ ++FHSLED +VK+ + A + H Sbjct: 259 NNELNEINYGMLLANEVLCPEGRLVAITFHSLEDTIVKRHLNGNVIEGRANPVPLKYCGH 318 Query: 282 -------------PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 ++ + + V++P E++A N RSRSAKLRA ++ Sbjct: 319 DVTLDPQLMQSFVQIKWRQLHRHVILPDAEEIARNSRSRSAKLRAAIKI 367 >gi|293603437|ref|ZP_06685862.1| S-adenosyl-methyltransferase MraW [Achromobacter piechaudii ATCC 43553] gi|292818139|gb|EFF77195.1| S-adenosyl-methyltransferase MraW [Achromobacter piechaudii ATCC 43553] Length = 365 Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats. Identities = 119/350 (34%), Positives = 181/350 (51%), Gaps = 36/350 (10%) Query: 19 DHVPVLLEKVIALL---------------NPAPG-------KVILDATFGAGGYSRSFCK 56 +H PVLLE + L P V +D TFG GG+SR Sbjct: 4 EHRPVLLEPTVDALLLPDFGGKGAARSHSQIEPDTATRADRGVFVDGTFGRGGHSRELLG 63 Query: 57 MGS---NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFD 110 ++ D+DP A++ + ++ F+ + + + G VDGV+ D Sbjct: 64 RLGKSARLVVFDKDPEAIAVANAL-AATDSRVTVVHGGFATMAEELQQLGIDKVDGVMLD 122 Query: 111 LGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQA 169 LGVSS QID +RGFSF + GPLDMRM + G + ++ + QA+V ++ ++ GEE+ A Sbjct: 123 LGVSSPQIDDAERGFSFMRDGPLDMRMDTTRGPTVAEWLAQASVDEMREVIADYGEERFA 182 Query: 170 SRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELA 229 ++A AI RR + P TT +L+ + V ++ HPATR+FQALRI++N E+EELA Sbjct: 183 FQVAKAIAARRATRPLCTTLELAECVASAV-RTREKGQHPATRTFQALRIYINRELEELA 241 Query: 230 QGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQS 287 + L +A + L GG L V+SFHSLEDR+VK+ A+R A + S + +S Sbjct: 242 RTLAAALELLAPGGRLAVISFHSLEDRMVKQCIVAAARPAAAHARLPLRESEMPQPILRS 301 Query: 288 ITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDDSFVHLPRLPTLS 337 + + V ++VA N R+RSA LR RT E + + ++ +L Sbjct: 302 LGR--VQAEDDEVAGNARARSAVLRVAERT-ETPLPPEGGFAFVKIGSLP 348 >gi|326564327|gb|EGE14557.1| S-adenosyl-methyltransferase MraW [Moraxella catarrhalis 103P14B1] gi|326565092|gb|EGE15285.1| S-adenosyl-methyltransferase MraW [Moraxella catarrhalis 46P47B1] gi|326570013|gb|EGE20059.1| S-adenosyl-methyltransferase MraW [Moraxella catarrhalis BC7] gi|326574697|gb|EGE24633.1| S-adenosyl-methyltransferase MraW [Moraxella catarrhalis 101P30B1] Length = 330 Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats. Identities = 110/326 (33%), Positives = 174/326 (53%), Gaps = 25/326 (7%) Query: 9 MSSAIH-HTIGDHVPVLLEKVIAL------LNP---APGKVILDATFGAGGYSRSFCKMG 58 MS+ I H VLL + +A+ LN V +DATFG GG+S+ + Sbjct: 1 MSNTISTSDEFSHTTVLLPETVAMVLGVKQLNDVTSKVSGVYVDATFGRGGHSQLLLEYL 60 Query: 59 S---NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLG 112 + + D+DP A++ +++ + + +F+ L + G+D G++ DLG Sbjct: 61 APEATLAVFDKDPEAIAVA-KSLAAQDTRIKVVHDSFAHLTKNLQALGIDKIDGLMADLG 119 Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASR 171 VSS Q+D G RGFSF + G +DMRM + G S+ + + + +L +L GEE+ + + Sbjct: 120 VSSPQLDDGTRGFSFMRDGVVDMRMDTTRGEPVSEWLQRVSADELADVLYEYGEERHSRK 179 Query: 172 IAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQG 231 IA AI + + +T+ L+ +I++ + + HPAT+SFQA+RIF+NNE+ ++ Sbjct: 180 IARAI---KSMQNYTSTRQLAEVIKQAHPAWQKGK-HPATQSFQAMRIFINNELGDVEAF 235 Query: 232 LRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITK 290 L + LKAGG+L V+SFHSLEDRL+K+F S G+ + P F Sbjct: 236 LAQSIGVLKAGGMLAVISFHSLEDRLIKQFLQRHSRGQYEEDARLPIIPKRPKYFGK--P 293 Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMR 316 K V P ++V N R+RSA LR +R Sbjct: 294 KRVGPCDQEVKANPRARSAWLRGAVR 319 >gi|261749334|ref|YP_003257019.1| S-adenosyl-methyltransferase MraW [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497426|gb|ACX83876.1| S-adenosyl-methyltransferase MraW [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 297 Score = 302 bits (775), Expect = 4e-80, Method: Composition-based stats. Identities = 106/304 (34%), Positives = 156/304 (51%), Gaps = 19/304 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H PVLL++ I L + +D TFG GG+S + K +++IA D+D A+ Sbjct: 5 HEPVLLKESIDNLVTDRNGIYVDVTFGGGGHSSAILKKLNENASLIAFDQDKEAIKNNPI 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + LF F L+ + + V GV+ DLG+SS QID RGFS Q + L Sbjct: 65 R----DRRLHLFHKNFIHLKPILKKLRIEKVSGVLADLGLSSSQIDNPIRGFSHQLNCIL 120 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ S SA D++N+ + ++L I GE K A IA I++ R P TT DL Sbjct: 121 DMRMNQESTHSAIDIINRYSKEELFHIFYKYGEFKNAIIIAEKILEERLRKPITTTWDLV 180 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 + + S R +R FQ++RI VNNEI L L + + GG + ++S+HS Sbjct: 181 KIFFRK-KTSFKKRKRFFSRLFQSIRIEVNNEINVLKNFLLESSTIILPGGRMAIISYHS 239 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 +EDR+ K FF + +++P F+ I KKV+ P +D+ N RSRSA+LR Sbjct: 240 IEDRITKYFFKKGVFHKKKMNNILP-------FKMIHKKVIQPRYQDIINNPRSRSARLR 292 Query: 313 AGMR 316 + Sbjct: 293 IAEK 296 >gi|302849292|ref|XP_002956176.1| hypothetical protein VOLCADRAFT_97159 [Volvox carteri f. nagariensis] gi|300258479|gb|EFJ42715.1| hypothetical protein VOLCADRAFT_97159 [Volvox carteri f. nagariensis] Length = 305 Score = 302 bits (775), Expect = 4e-80, Method: Composition-based stats. Identities = 109/318 (34%), Positives = 161/318 (50%), Gaps = 35/318 (11%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETM-R 79 +L +V+ P V LD T GAGG++ ++ +D DP A + + Sbjct: 1 MLNEVLDAFQPVTLNVYLDCTLGAGGHAAKIASAHPEMQMLLGIDLDPTAHVVAEPRIRA 60 Query: 80 DYKEQ-----FSLFQATFSQLQDYV-----PDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 + + L + + L+ + P +G++ DLG+SSMQID DRGFSF + Sbjct: 61 EAAGRSARLDVRLLRGNYRDLKRLLATVSTPSPRPNGILMDLGISSMQIDTADRGFSFMR 120 Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 GPLDMRM + +SA +V+N + +L RI+ GEEK +A IV+ R+ AP +TT Sbjct: 121 DGPLDMRMDPTAALSAEEVLNTWSEAELGRIIRDFGEEKLWKVVARRIVQAREVAPIRTT 180 Query: 189 QDLS------SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 Q L L+ K+ + IHPATR+FQALRI VN+E+++L + L A AL G Sbjct: 181 QQLVKAVGQTQLVGKSPRKASAKGIHPATRTFQALRIAVNDELQKLEKTLPDAIDALAPG 240 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G L V+SFHSLEDR+VK F +G+ + A+ + Sbjct: 241 GRLAVISFHSLEDRIVKHAFMRAAGRPTPEEENLVYGQDNAL--------------ETEA 286 Query: 303 NRRSRSAKLRAGMRTVER 320 N R+RSAKLR + ++ Sbjct: 287 NARARSAKLRILQKLPDK 304 >gi|225549158|ref|ZP_03770133.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi 94a] gi|225370384|gb|EEG99822.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi 94a] Length = 296 Score = 302 bits (774), Expect = 5e-80, Method: Composition-based stats. Identities = 98/305 (32%), Positives = 169/305 (55%), Gaps = 24/305 (7%) Query: 20 HVPVLLEKV---IALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 H PVLL+ + I L + +D+T G G ++++ + +++ ++RDP + Sbjct: 7 HFPVLLDAICKLIEDLPVKSDLIYIDSTLGEGVHAKAILEKYDFLSLVGIERDPQILERA 66 Query: 75 QETMRDYKEQFSLFQATFSQLQ-DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ + ++E+ + F F +Y + + ++ DLG+S +GFSF + PL Sbjct: 67 RQFLSIFEERITYFNDWFDNFFVNYPLNVKANFILVDLGISMFHYKGSKKGFSFLEDEPL 126 Query: 134 DMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 DMR+ S ISA+++VN + DL ++ L E + RI+ AIV+ R+ +TT++L Sbjct: 127 DMRLCSSSCKISAAEIVNTYSKYDLEALIYDLSNEHYSRRISKAIVEYRKIKKIETTKEL 186 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 S+I K FSK +I+PAT++FQALRI+VN+E+ L + L + L G+L +++FH Sbjct: 187 QSIISKVYPFSKV-KINPATKTFQALRIYVNDELTRLKRSLPFWVENLAKDGILAIITFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 S+EDR+VK FF S S ++ I+KK ++P+ ++ N+ SRSAKL Sbjct: 246 SIEDRIVKDFFRSLSCD---------------LYAKISKKPIMPSFGEIKKNKPSRSAKL 290 Query: 312 RAGMR 316 R + Sbjct: 291 RVIKK 295 >gi|331084062|ref|ZP_08333169.1| ribosomal RNA small subunit methyltransferase H 1 [Lachnospiraceae bacterium 6_1_63FAA] gi|330402424|gb|EGG81994.1| ribosomal RNA small subunit methyltransferase H 1 [Lachnospiraceae bacterium 6_1_63FAA] Length = 349 Score = 302 bits (774), Expect = 5e-80, Method: Composition-based stats. Identities = 99/331 (29%), Positives = 161/331 (48%), Gaps = 31/331 (9%) Query: 3 SKSCKTMSSAIHH---TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---K 56 K T+ I G H+ + +++++ L PG++ LDAT G GG+S + Sbjct: 32 EKYADTIEKVIQKGGTPAGMHISICVQEILDFLQIQPGQIGLDATLGYGGHSSKMLGCLE 91 Query: 57 MGSNVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLG 112 ++ ALD DP + +E + + ++ Q F+ + + G D V+ DLG Sbjct: 92 GKGHLYALDVDPIEIKKTKERLEKMDYKEDILTIKQMNFADVDQLKEEAGGFDFVLADLG 151 Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASR 171 VSSMQID +RGF+++ GPLD+R++ GIS ++ + + +L +L +E A Sbjct: 152 VSSMQIDNPERGFTYKFEGPLDLRLNPEKGISVAERLKDISQPELEGMLIENSDEPYAKE 211 Query: 172 IAHAIV-KRRQSAPFQTTQDLSSLIQKT---VYFSKNNR--IHPATRSFQALRIFVNNEI 225 I++ I+ + R+ P TT L ++K + + R+FQALRI VN+E Sbjct: 212 ISNTIISEIRRGNPITTTTQLQKAVEKALVRIPEKERKEMVKKSCARTFQALRIDVNSEF 271 Query: 226 EELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF 285 E L + L G + +++FHS EDRLVKK F V+ Sbjct: 272 EVLEAFMEKLPTVLNKGARVAILTFHSGEDRLVKKAFQRF--------------YREGVY 317 Query: 286 QSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 I+K V+ P+ E+ A N RSRS K+R ++ Sbjct: 318 SEISKDVIRPSAEECARNSRSRSTKMRWAIK 348 >gi|197304029|ref|ZP_03169061.1| hypothetical protein RUMLAC_02766 [Ruminococcus lactaris ATCC 29176] gi|197296997|gb|EDY31565.1| hypothetical protein RUMLAC_02766 [Ruminococcus lactaris ATCC 29176] Length = 351 Score = 302 bits (774), Expect = 6e-80, Method: Composition-based stats. Identities = 94/327 (28%), Positives = 167/327 (51%), Gaps = 29/327 (8%) Query: 5 SCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNV 61 + + + + G H+ +++++++ L+ PG+ DAT G GG++++ + ++ Sbjct: 38 TVEHVIRKGNTPAGMHISIMVKEILDFLDIQPGQTGFDATLGYGGHTKAMLECLKGQGHI 97 Query: 62 IALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQ 117 A D DP + ++ + + E ++ F + + G D ++ DLGVSSMQ Sbjct: 98 YATDVDPEESAKTKKRLEEQGFGEEILTVCLQNFCTIDEIAEKVGGFDFILADLGVSSMQ 157 Query: 118 IDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 ID RGFSF+ GPLD+R++ GISA++ ++ + ++L +L +E +A AI Sbjct: 158 IDNPKRGFSFKADGPLDLRLNQEKGISAAERLDTISREELAGMLYENSDEPYCEELAKAI 217 Query: 177 VKR-RQSAPFQTTQDLSSLIQKTVYFSKNNR------IHPATRSFQALRIFVNNEIEELA 229 R+ TT L ++I+KT+ F +N+ R+FQALRI VNNE E L Sbjct: 218 TDEIRRGNRIDTTTKLRNVIEKTLSFLPDNKEKKDIVKKTCQRTFQALRIDVNNEFEVLY 277 Query: 230 QGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT 289 + + AL+ GG + +++FHS ED+LVKK + ++ Sbjct: 278 EFMEKLPDALRPGGRVAILTFHSGEDKLVKKALK--------------AGYKAGIYSDYA 323 Query: 290 KKVVVPTQEDVAFNRRSRSAKLRAGMR 316 K V+ P+ ++ A N R+RS K+R ++ Sbjct: 324 KDVIRPSAQECAKNGRARSTKMRWAVK 350 >gi|331085870|ref|ZP_08334953.1| ribosomal RNA small subunit methyltransferase H 1 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406793|gb|EGG86298.1| ribosomal RNA small subunit methyltransferase H 1 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 374 Score = 302 bits (774), Expect = 6e-80, Method: Composition-based stats. Identities = 101/334 (30%), Positives = 167/334 (50%), Gaps = 31/334 (9%) Query: 3 SKSCKTMSSAIHH---TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG- 58 K +T+ I +G H+ + +++++ L PG+ LDAT G GG+++ K Sbjct: 55 EKYPETIEKVIQKGGTPVGMHISICVKEILDFLQIQPGQKGLDATLGYGGHTKEMLKCLQ 114 Query: 59 --SNVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLG 112 ++ ALD DP +E + E ++ Q F+ + + G D V+ DLG Sbjct: 115 GQGHLYALDVDPIESVKTKERLEKAGYGEEILTIRQMNFADIDQIAREAGPFDFVLADLG 174 Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASR 171 VSSMQID +RGF+++K GPLD+R++ G+SA++ + + ++L +L +E A Sbjct: 175 VSSMQIDNPERGFTYKKEGPLDLRLNPQKGVSAAERLKEVTEEELAGMLWENSDEPYAEE 234 Query: 172 IAHAIVKR-RQSAPFQTTQDLSSLIQKTVYFSKNNR-----IHPATRSFQALRIFVNNEI 225 IA ++++ R+ P +TT L I++ + F R+FQALRI VN+E Sbjct: 235 IAATVMEKLRKGEPVETTIQLQKAIEEALSFLPEREQKEAVKKSCQRTFQALRIDVNSEF 294 Query: 226 EELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF 285 E L + AL GG + +++FHS EDR+VKK F ++ Sbjct: 295 EVLYAFMEKLPAALAPGGRVAILTFHSGEDRIVKKAFKELK--------------RAGIY 340 Query: 286 QSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319 I + V+ P+ E+ N R+RS K+R +R E Sbjct: 341 SEIAQDVIRPSAEECTRNSRARSTKMRWAVRAKE 374 >gi|325662020|ref|ZP_08150639.1| ribosomal RNA small subunit methyltransferase H 1 [Lachnospiraceae bacterium 4_1_37FAA] gi|325471683|gb|EGC74902.1| ribosomal RNA small subunit methyltransferase H 1 [Lachnospiraceae bacterium 4_1_37FAA] Length = 374 Score = 302 bits (773), Expect = 6e-80, Method: Composition-based stats. Identities = 101/334 (30%), Positives = 167/334 (50%), Gaps = 31/334 (9%) Query: 3 SKSCKTMSSAIHH---TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG- 58 K +T+ I +G H+ + +++++ L PG+ LDAT G GG+++ K Sbjct: 55 EKYPETIEKVIQKGGTPVGMHISICVKEILDFLQIQPGQKGLDATLGYGGHTKEMLKCLQ 114 Query: 59 --SNVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLG 112 ++ ALD DP +E + E ++ Q F+ + + G D V+ DLG Sbjct: 115 GQGHLYALDVDPIESVKTKERLEKAGYGEEILTIRQMNFADIDQIAREAGPFDFVLADLG 174 Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASR 171 VSSMQID +RGF+++K GPLD+R++ G+SA++ + + ++L +L +E A Sbjct: 175 VSSMQIDNPERGFTYKKEGPLDLRLNPQKGVSAAERLKEVTEEELAGMLWENSDEPYAEE 234 Query: 172 IAHAIVKR-RQSAPFQTTQDLSSLIQKTVYFSKNNR-----IHPATRSFQALRIFVNNEI 225 IA ++++ R+ P +TT L I++ + F R+FQALRI VN+E Sbjct: 235 IAVTVMEKLRKGEPVETTIQLQKAIEEALSFLPEREQKEAVKKSCQRTFQALRIDVNSEF 294 Query: 226 EELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF 285 E L + AL GG + +++FHS EDR+VKK F ++ Sbjct: 295 EVLYAFMEKLPAALAPGGRVAILTFHSGEDRIVKKAFKELK--------------RAGIY 340 Query: 286 QSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319 I + V+ P+ E+ N R+RS K+R +R E Sbjct: 341 SEIAQDVIRPSAEECTRNSRARSTKMRWAVRAKE 374 >gi|319440248|ref|ZP_07989404.1| 16S rRNA m(4)C1402 methyltranserfase [Corynebacterium variabile DSM 44702] Length = 340 Score = 302 bits (773), Expect = 6e-80, Method: Composition-based stats. Identities = 106/325 (32%), Positives = 173/325 (53%), Gaps = 29/325 (8%) Query: 9 MSSAIHHTIGD--HVPVLLEKVIALL--------NPAPGKVILDATFGAGGYSRSFCKMG 58 MS G+ HVPV+ ++++ L+ P VI+D T GAGG++ F + Sbjct: 1 MSEPSGRISGEFGHVPVMRDRMVELVGAGVEGTGATRP--VIVDGTLGAGGHTEVFLETF 58 Query: 59 SN--VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD-------------KG 103 + V+ LDRDP A++ Q+ + + ++F ++ F L D + D G Sbjct: 59 PDAVVVGLDRDPNAIAQAQDRLARFGDRFIAYRTRFDGLGDALDDLASDGRLPGEFATTG 118 Query: 104 VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGI 162 V G +FDLGVSSMQ+D +RGF++ + PLDMRM S ++A++V+N + DL +L Sbjct: 119 VSGYLFDLGVSSMQLDQAERGFAYSQDAPLDMRMDPDSPLTAAEVLNTYSHGDLAHVLSA 178 Query: 163 LGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFV 221 G+E+ A +IA A+++ R+ PF T+ L L+ +T+ + + HPA R+FQALR+ V Sbjct: 179 YGDERFAGKIASAVLREREQEPFTTSGRLVELLYRTIPAATRRTGGHPAKRTFQALRVEV 238 Query: 222 NNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH 281 N E++ LA + +A L GG+ + +S+ SLED++VKK A + + Sbjct: 239 NAELDSLAAVIPAATARLGLGGVAVFMSYQSLEDKIVKKALAELTANRTPPGLPVDLPDT 298 Query: 282 PAVFQSITKKVVVPTQEDVAFNRRS 306 A F +T+ ++ N RS Sbjct: 299 AASFDLVTRGAEKADAAEIERNPRS 323 >gi|291539383|emb|CBL12494.1| S-adenosyl-methyltransferase MraW [Roseburia intestinalis XB6B4] Length = 350 Score = 302 bits (773), Expect = 6e-80, Method: Composition-based stats. Identities = 96/326 (29%), Positives = 164/326 (50%), Gaps = 28/326 (8%) Query: 5 SCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNV 61 + + + + G H+ +++++++ LN PG+ DAT G GG++++ ++ Sbjct: 38 TIEHVIKKGNTPAGMHISIMVQEILDTLNIQPGETGFDATLGYGGHTKAMLACLNGQGHI 97 Query: 62 IALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQ 117 A D DP + ++ + + + ++ F + + + G D ++ DLGVSSMQ Sbjct: 98 YATDVDPEESAKTKKRLEELGYGEDILTIRLQNFCTIDEIAKEAGGFDFILADLGVSSMQ 157 Query: 118 IDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 ID RGFSF+ GPLD+R++ GISA++ ++ ++L +L +E +A AI Sbjct: 158 IDNPKRGFSFKVDGPLDLRLNQEAGISAAERLDTITREELAGMLYENSDEPYCEELAKAI 217 Query: 177 VKR-RQSAPFQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQ 230 R+ + TT L +I+KT+ F K+ R+FQALRI VN E E L + Sbjct: 218 TDEIRKGSRIDTTTKLREVIEKTLDFLPEKEKKDTIKKTCQRTFQALRIDVNREFEVLYE 277 Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK 290 + ALK GG + +++FHS ED+LVKK ++ +K Sbjct: 278 FMEKLPDALKPGGRVAILTFHSGEDKLVKKALKE--------------GCRAGIYADYSK 323 Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMR 316 VV P+ ++ A N R+RS K+R +R Sbjct: 324 DVVRPSAQECAQNGRARSTKMRWAVR 349 >gi|320533237|ref|ZP_08033944.1| S-adenosyl-methyltransferase MraW [Actinomyces sp. oral taxon 171 str. F0337] gi|320134542|gb|EFW26783.1| S-adenosyl-methyltransferase MraW [Actinomyces sp. oral taxon 171 str. F0337] Length = 329 Score = 301 bits (772), Expect = 8e-80, Method: Composition-based stats. Identities = 111/314 (35%), Positives = 171/314 (54%), Gaps = 24/314 (7%) Query: 17 IGDHVPVLLEKVIALLNPAPGK-------------VILDATFGAGGYSRSFCKMGS--NV 61 +G H PVLLE+ + LL PA V++D T G GG++ + + V Sbjct: 14 VGRHQPVLLERCLDLLAPAIEGHADSTSTGGPARPVMIDCTLGMGGHTEAALERFPALKV 73 Query: 62 IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSS 115 + +DRDP A++ + + ++F QAT+ + + VD V+ DLGVSS Sbjct: 74 VGIDRDPEAIALASARLARFGDRFIAVQATYDAVNRVAREHSARAEGAVDAVLMDLGVSS 133 Query: 116 MQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAH 174 +Q+D RGFS+ + PLDMRM SG++A D++ A+ +L+RIL GEE+ ASRIA Sbjct: 134 LQLDEASRGFSYARPAPLDMRMDQGSGMTAQDLLETADAVELSRILRTYGEERFASRIAA 193 Query: 175 AIVKRRQSA-PFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGL 232 AIV+RRQ+ P +TQDL+ L+++ V ++ + HPA R+FQALRI VN E++ L + + Sbjct: 194 AIVRRRQAGEPVVSTQDLAELVRQAVPAPARRSGGHPAKRTFQALRIAVNAELDVLERAV 253 Query: 233 RSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV 292 A +L+ GG L+V S+ SLEDR+VK+ A + + + +T Sbjct: 254 PRALNSLRVGGRLVVESYQSLEDRIVKRALAHGATSRAPQDLPVVPETDRPYLELLTSGA 313 Query: 293 VVPTQEDVAFNRRS 306 ++ N RS Sbjct: 314 EKADARELDHNPRS 327 >gi|148828289|ref|YP_001293042.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae PittGG] gi|263456035|sp|A5UIQ3|RSMH_HAEIG RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|148719531|gb|ABR00659.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae PittGG] Length = 289 Score = 301 bits (772), Expect = 8e-80, Method: Composition-based stats. Identities = 109/292 (37%), Positives = 160/292 (54%), Gaps = 18/292 (6%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M+S + +H+ VLL + + L + +D TFG GG+SR +IA+D Sbjct: 1 MNSENSFSSSEHITVLLHEAVNGLALKENGIYIDGTFGRGGHSRFILSQLSSNGRLIAVD 60 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCG 121 RDP A++ + +F + +FS + + +DG++ DLGVSS Q+D Sbjct: 61 RDPRAIAEAHKI---QDLRFQIEHNSFSHIPEICDKLNLVGKIDGILLDLGVSSPQLDEA 117 Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF K GPLDMRM + G+SA + + Q +++DLT +L GEE+ A RIA AIV Sbjct: 118 ERGFSFMKDGPLDMRMDTTQGLSAEEWLKQVSIEDLTWVLKTFGEERFAKRIATAIVDFN 177 Query: 181 QSAP------FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234 +SA T L+ LI + V F K+ HPATRSFQA+RIF+N+E++EL L S Sbjct: 178 KSAVKNGTEFLSRTSQLAELISQAVPF-KDKHKHPATRSFQAIRIFINSELDELESLLNS 236 Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ 286 A L G L ++SFHSLEDR+VK F ++ + + +V + Sbjct: 237 ALDMLAPEGRLSIISFHSLEDRMVKHFMKNKVRARIFPKVYHCEKIKFSVIK 288 >gi|159902730|ref|YP_001550074.1| S-adenosylmethionine-dependent methyltransferase [Prochlorococcus marinus str. MIT 9211] gi|226709923|sp|A9BD32|RSMH_PROM4 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|159887906|gb|ABX08120.1| Predicted S-adenosylmethionine-dependent methyltransferase [Prochlorococcus marinus str. MIT 9211] Length = 305 Score = 301 bits (772), Expect = 1e-79, Method: Composition-based stats. Identities = 111/314 (35%), Positives = 172/314 (54%), Gaps = 30/314 (9%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVI-----LDATFGAGGYSRSFCKMGS--NVIALDRDP 68 + +H PVL ++I ++ P +I +DAT G GG+S + +VI LD+DP Sbjct: 10 STFNHTPVLANELIEIIKKLPEDLIKNCLIIDATIGGGGHSSLVLETFPGISVIGLDQDP 69 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 AV+ E ++ + ++ + FS P K V V DLGVSS Q+D G RGFSF+ Sbjct: 70 KAVAAASEHLKIFGDRAKIETTNFSNFT---PSKKVAMVFADLGVSSPQLDEGSRGFSFR 126 Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQ 186 +GPLDMRM+ G +A++++++ + +L ++ GEE+ + RIA I + P+ Sbjct: 127 LNGPLDMRMNQIDGTNAAELIDRLSENELANLIFKYGEERFSRRIAKRIKHDLAKQGPYS 186 Query: 187 TTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 T L+ I +N R+HPAT++FQALRI +N+E++ L+ L+ A + L GL Sbjct: 187 GTIALAYAIAGCYPPKLRNRRVHPATKTFQALRIAINHELDVLSVLLKKAPEWLLDDGLF 246 Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 V+SFHSLEDRLVKK F + + + IT+K ++ T +++ N R Sbjct: 247 AVISFHSLEDRLVKKSFLTDT-----------------RLERITRKPLIATTNEISINPR 289 Query: 306 SRSAKLRAGMRTVE 319 SRSAK+R R Sbjct: 290 SRSAKMRVARRIEA 303 >gi|226322767|ref|ZP_03798285.1| hypothetical protein COPCOM_00539 [Coprococcus comes ATCC 27758] gi|225208748|gb|EEG91102.1| hypothetical protein COPCOM_00539 [Coprococcus comes ATCC 27758] Length = 356 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 96/318 (30%), Positives = 164/318 (51%), Gaps = 29/318 (9%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70 + G H+ +++++++ L PG+V DAT G GG++++ + ++ A D DP Sbjct: 51 NTPAGMHISIMVQEILDFLKIQPGEVGFDATLGYGGHTKAMLQCLEGKGHIYATDVDPEE 110 Query: 71 VSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFS 126 + ++ + + + ++ F + + + G D ++ DLGVSSMQID RGFS Sbjct: 111 SAKTKKRLEEQGFGEDILTIRLQNFCTIDEIAKEVGGFDFILADLGVSSMQIDNPKRGFS 170 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAP 184 F+ GPLD+R++ GISA++ ++ + ++L +L +E +A AI + R+ Sbjct: 171 FKVDGPLDLRLNQEKGISAAERLDTISREELAGMLYENSDEPYCEELAKAITEEIRKGHR 230 Query: 185 FQTTQDLSSLIQKTVYFSKNNR------IHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 TT L +I++T+ F N+ R+FQALRI VN+E E L + + A Sbjct: 231 IDTTTKLRQVIEQTLSFLPENKEKKDIIRKTCQRTFQALRIDVNHEFEVLYEFMEKLPGA 290 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 LK GG + +++FHS ED+LVKK + V+ K VV P+ E Sbjct: 291 LKPGGRVAILTFHSGEDKLVKKALK--------------AGYREGVYSEYAKDVVRPSAE 336 Query: 299 DVAFNRRSRSAKLRAGMR 316 + A N R+RS K+R ++ Sbjct: 337 ECAQNGRARSTKMRWAVK 354 >gi|325263876|ref|ZP_08130609.1| S-adenosyl-methyltransferase MraW [Clostridium sp. D5] gi|324030914|gb|EGB92196.1| S-adenosyl-methyltransferase MraW [Clostridium sp. D5] Length = 357 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 101/331 (30%), Positives = 161/331 (48%), Gaps = 31/331 (9%) Query: 3 SKSCKTMSSAIHH---TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG- 58 K T+ I G H+ + +++++ L PG+ LDAT G GG++ K Sbjct: 40 EKYAGTIEKVIQKGSTPAGMHISICVQEILEFLQIKPGQKGLDATLGYGGHTLEMLKCLE 99 Query: 59 --SNVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLG 112 ++ ALD DP +E + + E ++ F+ + + G D ++ DLG Sbjct: 100 NQGHIYALDVDPIESQKTKERLSNLGYGPEILTVRLLNFANIDQIAAEAGPFDFILADLG 159 Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASR 171 VSSMQID +RGFS++ GPLD+RM+ GISA++ + ++L +L +E A Sbjct: 160 VSSMQIDNPERGFSYKTEGPLDLRMNPEAGISAAERLGTITSEELQGMLVENADEPYAEE 219 Query: 172 IAHAIV-KRRQSAPFQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEI 225 IA A+V + ++ +TT+ L +I+ + F K R+FQALRI +NNE Sbjct: 220 IADAVVLETKKGKKIETTRQLREVIESALSFLPAAERKEAVKKSCQRTFQALRIDINNEF 279 Query: 226 EELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF 285 E L L L GG +++FHS EDRLVKK F + + + Sbjct: 280 EVLYAFLDKLPDVLAPGGRAAILTFHSGEDRLVKKSFKRLYNEGI--------------Y 325 Query: 286 QSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 +K V+ P+ E+ N R+RS K+R ++ Sbjct: 326 SDYSKDVIRPSAEECIRNSRARSTKMRWAVK 356 >gi|227833499|ref|YP_002835206.1| S-adenosyl-methyltransferase [Corynebacterium aurimucosum ATCC 700975] gi|262184487|ref|ZP_06043908.1| S-adenosyl-methyltransferase MraW [Corynebacterium aurimucosum ATCC 700975] gi|263446134|sp|C3PHG4|RSMH_CORA7 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|227454515|gb|ACP33268.1| S-adenosyl-methyltransferase [Corynebacterium aurimucosum ATCC 700975] Length = 347 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 113/344 (32%), Positives = 177/344 (51%), Gaps = 28/344 (8%) Query: 12 AIHHTIGD---HVPVLLEKVIALLNPA-----PGKVILDATFGAGGYSRSFCKMGS--NV 61 I++ + + HVPV+ ++ LL PA VI+D T GAGG+S F + Sbjct: 6 TINYDVSENHGHVPVMRARMAQLLAPAIEAAGENAVIVDGTLGAGGHSEYFLTTFPSVRI 65 Query: 62 IALDRDPFAVSCGQETMRDYKEQFSLFQATF-----------SQLQDYVPDKGVDGVVFD 110 I +DRD ++S + + ++F A F S++ + G+ G +FD Sbjct: 66 IGVDRDSASLSSASRRLSPFADRFVGVNARFDEVGSAIAEGESEVFSIAREHGIAGALFD 125 Query: 111 LGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQA 169 LGVSSMQ+D DRGF+++ PLDMRM G++A+D++N + DL RIL G+E+ A Sbjct: 126 LGVSSMQLDQVDRGFAYKTDAPLDMRMDPRQGMTAADILNTYSHGDLARILKTYGDERFA 185 Query: 170 SRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEEL 228 +IA A+++ R+ PF + L L+ T+ + + HPA R+FQALR+ VN E+E + Sbjct: 186 GKIASAVLREREKEPFGNSARLVDLLYATIPAATRRTGGHPAKRTFQALRVEVNRELEAI 245 Query: 229 AQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI 288 Q + AL GG + +S+ SLEDR+VK F S + A + + Sbjct: 246 EQVIPVITDALSIGGRAVFMSYQSLEDRIVKHAFTKLSTSTTPAGLPMDLPGTAAHYSVV 305 Query: 289 TKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDDSFVHLPR 332 T+ +QE++A N R+ S ++RA R +E H P Sbjct: 306 TRGAEKASQEEIAENPRAASVRVRALER-----LEGTPSFHEPG 344 >gi|291534831|emb|CBL07943.1| S-adenosyl-methyltransferase MraW [Roseburia intestinalis M50/1] Length = 350 Score = 300 bits (770), Expect = 1e-79, Method: Composition-based stats. Identities = 95/326 (29%), Positives = 162/326 (49%), Gaps = 28/326 (8%) Query: 5 SCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNV 61 + + + + G H+ +++++++ L PG+ DAT G GG++++ ++ Sbjct: 38 TIEHVIKKGNTPAGMHISIMVQEILDTLKIQPGETGFDATLGYGGHTKAMLACLNGQGHI 97 Query: 62 IALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQ 117 A D DP + ++ + + + ++ F + + + G D ++ DLGVSSMQ Sbjct: 98 YATDVDPEESAKTKKRLEELGYGEDILTIRLQNFCTIDEIAKEVGGFDFILADLGVSSMQ 157 Query: 118 IDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 ID RGFSF+ GPLD+R++ GISA++ ++ ++L +L +E +A AI Sbjct: 158 IDNPKRGFSFKVDGPLDLRLNQEAGISAAERLDTITREELAGMLYENSDEPYCEELAKAI 217 Query: 177 VKR-RQSAPFQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQ 230 R+ TT L +I+KT+ F K+ R+FQALRI VN E E L + Sbjct: 218 TDEIRKGNRIDTTTKLREVIEKTLDFLPEKEKKDTIKKTCQRTFQALRIDVNREFEVLYE 277 Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK 290 + ALK GG + +++FHS ED+LVKK ++ +K Sbjct: 278 FMEKLPDALKPGGRVAILTFHSGEDKLVKKALKE--------------GYRAGIYADYSK 323 Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMR 316 VV P+ ++ A N R+RS K+R +R Sbjct: 324 DVVRPSAQECAQNGRARSTKMRWAVR 349 >gi|26553777|ref|NP_757711.1| methyltransferase [Mycoplasma penetrans HF-2] gi|30173058|sp|Q8EW81|RSMH_MYCPE RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|26453784|dbj|BAC44115.1| methyltransferase [Mycoplasma penetrans HF-2] Length = 312 Score = 300 bits (770), Expect = 1e-79, Method: Composition-based stats. Identities = 92/310 (29%), Positives = 146/310 (47%), Gaps = 12/310 (3%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCG 74 H+ V LE + LN K+ +D TFG GG+S K + D D A Sbjct: 7 NKHISVRLEDAVDSLNIQKDKIYVDCTFGRGGHSFEILKRLSSKGKLFVFDLDLDAKKYF 66 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +K F Q F L++ + VDG +FD GVSS +D +RGFSF+ Sbjct: 67 DNNFSKFKNCF-FIQDNFKNLKENLAKFDISKVDGFLFDFGVSSPMLDNANRGFSFKLDA 125 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM+ + +SA +V+N + + L +I GE + + I+K R + P +TT + Sbjct: 126 RLDMRMNQNQELSAYEVINNYSKEKLIQIFWKYGEIRNPVPVVDEIIKYRSNKPIETTLE 185 Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +I+K + + H A FQA+RI VN+E+ + + L A L G ++ +S Sbjct: 186 LVDIIRKRTPIKIQREKKHFARTYFQAIRIEVNDELNSIRKALSDALNMLSKNGRIVTIS 245 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLE++ +K + + I ++ F+ I K + ++ N R+RS+ Sbjct: 246 FHSLEEKEIKNTYKDVLESKIPKEVPINNSFD---FKIIKIKPKRASSSELEENNRTRSS 302 Query: 310 KLRAGMRTVE 319 L+ R E Sbjct: 303 FLKVIERVNE 312 >gi|307108403|gb|EFN56643.1| hypothetical protein CHLNCDRAFT_144447 [Chlorella variabilis] Length = 468 Score = 300 bits (770), Expect = 2e-79, Method: Composition-based stats. Identities = 112/384 (29%), Positives = 162/384 (42%), Gaps = 87/384 (22%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCGQE 76 H+ VLL +V+A + +D T GA G++ + + + + D DP A Sbjct: 84 HISVLLSEVLAAFEGRAVRRYVDGTLGAAGHATAMLRQHPELESLVGFDLDPTAHQLASA 143 Query: 77 TMR---------------------------------DYKEQFSLFQATFSQLQDYVPDKG 103 + + + L ++ F ++Q + Sbjct: 144 RLAAAGAAVVPVAVSPAGRASFELPTGPGGGDGTDGEARPTAFLVRSNFGRIQAVLRQLP 203 Query: 104 -----------------------------VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 VD ++ DLG+SSMQ+D DRGFSF + GPLD Sbjct: 204 LGPGGGGGSTDSNNSSSNGNTSSSSGSGGVDAILLDLGISSMQVDTADRGFSFLRDGPLD 263 Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM + +SA VN +L R++ GEE+ IA IV R+ AP TTQ L Sbjct: 264 MRMDPAAPLSAELAVNTWPEGELGRVIREYGEERHWRGIARRIVAAREEAPITTTQQLVR 323 Query: 194 LIQKTVYFSKN---------------NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 I HPATR+FQALRI VN E++ +AQ L A + Sbjct: 324 AIGSPGGGGGGGGGRGRGRRSGGGDARFKHPATRTFQALRIAVNGELQSIAQALPDAIEC 383 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH------MIPSNAHPAVFQSITKKV 292 L GG L V++FHSLEDR+VK F + +G + A A + +T++ Sbjct: 384 LAPGGRLAVITFHSLEDRIVKWAFRAAAGMAPSDEQLPSYCLPFEEAAAQASVRILTRRP 443 Query: 293 VVPTQEDVAFNRRSRSAKLRAGMR 316 V P++E+ A N RSRSAKLR + Sbjct: 444 VAPSEEEQAANVRSRSAKLRVVEK 467 >gi|156083547|ref|XP_001609257.1| S-adenosyl methyltransferase [Babesia bovis T2Bo] gi|154796508|gb|EDO05689.1| S-adenosyl methyltransferase, putative [Babesia bovis] Length = 420 Score = 300 bits (770), Expect = 2e-79, Method: Composition-based stats. Identities = 109/332 (32%), Positives = 162/332 (48%), Gaps = 39/332 (11%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76 H PVLL++ + +L P LD T G GG++ + K+ S ++ALDRDP +V + Sbjct: 98 HEPVLLKEALDMLVIDPDGRYLDLTLGYGGHTEAILKLLSPKGVLVALDRDPESVYYTSK 157 Query: 77 TMRDY--KEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQK 129 + Y +Q TFS L + + G++ DLG+S+ Q++ RGF++ Sbjct: 158 RLEQYVRSKQLVPVIGTFSNLNSVLESNNLPLKDYTGIIADLGISTHQLEDPKRGFAYNT 217 Query: 130 SGPLDMRMSC------------------SGISASDVVNQANVKDLTRILGILGEEKQASR 171 GPLDMRMS +G A ++N+ +D+ +L GEE +A Sbjct: 218 DGPLDMRMSNPLYDPFNPRDDIVKPNLDTGNIAFKLINKGREQDIAYVLREYGEEPRAII 277 Query: 172 IAHAIVKRRQS-APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQ 230 IA IV++RQ TT L ++ V + + +R FQALRI+VNNE++ELA Sbjct: 278 IARRIVEKRQRLGEIATTFQLRDIVLSCVRGNHKAGMKTLSRVFQALRIYVNNELDELAH 337 Query: 231 GLRSAEKALKAG-GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT 289 L A L G +V+S+HSLEDR VK F ++ IT Sbjct: 338 LLDHAPSILNPKQGRFVVISYHSLEDRAVKHAFTGLQKLKTMSND---------SYKVIT 388 Query: 290 KKVVVPTQEDVAFNRRSRSAKLRAGMRTVERS 321 KK V PT E+ N+++RSAKLR R++ Sbjct: 389 KKCVTPTLEECTSNQKARSAKLRCLERSMAAP 420 >gi|291519694|emb|CBK74915.1| S-adenosyl-methyltransferase MraW [Butyrivibrio fibrisolvens 16/4] Length = 347 Score = 300 bits (770), Expect = 2e-79, Method: Composition-based stats. Identities = 95/326 (29%), Positives = 152/326 (46%), Gaps = 28/326 (8%) Query: 5 SCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNV 61 + + + S G H+ +++++++ L PG+ LD T G GG++R + + Sbjct: 35 TIERVISKGSTPAGMHISIMVQEILDFLQIQPGQKGLDCTLGYGGHTRKMLEQLQGQGCI 94 Query: 62 IALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQ 117 LD DP E +R + + F F+ + + G D V+ DLGVSSMQ Sbjct: 95 YGLDVDPIESKKTVERLRGFGFGEDNFQFRLINFANIDKVAEEAGKFDFVLADLGVSSMQ 154 Query: 118 IDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 ID +RGFS++ GPLD+R+ G SA++ ++ ++ ++ +E A IAH + Sbjct: 155 IDNPERGFSYKIDGPLDLRLDPEHGESAAERLHNITEEEFIGMMVENSDEPYAEEIAHKV 214 Query: 177 VKRRQSA-PFQTTQDLSSLIQKTVYFSKNNRI-----HPATRSFQALRIFVNNEIEELAQ 230 P TT L I + ++ R FQALRI VN+E E L Sbjct: 215 FTLMAKGNPMDTTTALREAISEALWKVPKEEKEQAIKKSCARVFQALRIDVNSEFEVLYT 274 Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK 290 L LK GG + +++FHS EDRLVKK F + + V+ ++ Sbjct: 275 FLEKLPGILKPGGRVAILTFHSGEDRLVKKSFKELAKEG--------------VYSEVSS 320 Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMR 316 VV P+ E+ N RS+S K+R ++ Sbjct: 321 DVVRPSAEECRINPRSKSTKMRWAVK 346 >gi|240145398|ref|ZP_04743999.1| S-adenosyl-methyltransferase MraW [Roseburia intestinalis L1-82] gi|257202523|gb|EEV00808.1| S-adenosyl-methyltransferase MraW [Roseburia intestinalis L1-82] Length = 350 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 95/326 (29%), Positives = 163/326 (50%), Gaps = 28/326 (8%) Query: 5 SCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNV 61 + + + + G H+ +++++++ L PG+ DAT G GG++++ ++ Sbjct: 38 TIEHVIKKGNTPAGMHISIMVQEILDTLKIQPGETGFDATLGYGGHTKAMLACLNGQGHI 97 Query: 62 IALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQ 117 A D DP + ++ + + + ++ F + + + G D ++ DLGVSSMQ Sbjct: 98 YATDVDPEESAKTKKRLEELGYGEDILTIRLQNFCTIDEIAKEAGGFDFILADLGVSSMQ 157 Query: 118 IDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 ID RGFSF+ GPLD+R++ GISA++ ++ ++L +L +E +A AI Sbjct: 158 IDNPKRGFSFKVDGPLDLRLNQEAGISAAERLDTITREELAGMLYENSDEPYCEELAKAI 217 Query: 177 VKR-RQSAPFQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQ 230 R+ + TT L +I+KT+ F K+ R+FQALRI VN E E L + Sbjct: 218 TDEIRKGSRIDTTTKLREVIEKTLDFLPEKEKKDTIKKTCQRTFQALRIDVNREFEVLYE 277 Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK 290 + ALK GG + +++FHS ED+LVKK ++ +K Sbjct: 278 FMEKLPDALKPGGRVAILTFHSGEDKLVKKALKE--------------GCRAGIYADYSK 323 Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMR 316 VV P+ ++ A N R+RS K+R +R Sbjct: 324 DVVRPSAQECAQNGRARSTKMRWAVR 349 >gi|168700539|ref|ZP_02732816.1| S-adenosyl-methyltransferase MraW [Gemmata obscuriglobus UQM 2246] Length = 341 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 113/326 (34%), Positives = 163/326 (50%), Gaps = 31/326 (9%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCG 74 G H+PVLL +V+A L+P PG+ ++D T G G+S + +IA D D + Sbjct: 29 GAHIPVLLAEVLAALDPRPGQTVVDCTLGFAGHSLELLRRVAPDGLLIATDLDVGNIEPA 88 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + + F L F+ L + +GV D V+ DLG+SSMQ+D DRGFSF + G Sbjct: 89 RPKLEEAGGLFGLHHTNFAGLPTVLAIEGVTAVDAVLADLGMSSMQVDDRDRGFSFMRDG 148 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + G +A+ ++ + +L LG+E QA IA A+V+ RQ+AP + T+ Sbjct: 149 PLDMRMDRTRGRTAAQLLATLSRDELAACFSELGDEPQAGAIADAVVRERQTAPVERTKQ 208 Query: 191 LSSLIQKTVYFS----------KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 L +LI+ + + P TR FQALRI N E+ L Q LR LK Sbjct: 209 LRALIEAAAPVRIDRAPGAPPERKQLLAPVTRVFQALRILTNRELASLQQLLRVLPTVLK 268 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300 GG+ ++SFHS EDRLVK F V+ S++ + T E+ Sbjct: 269 PGGVAAIISFHSGEDRLVKAAFRD--------------GLRAGVYSSVSPDAIRSTFEER 314 Query: 301 AFNRRSRSAKLRAGMRTVERSIEDDS 326 N R+RSAKLR R + + Sbjct: 315 RANPRARSAKLRVARRAEAPPDAEPA 340 >gi|224534257|ref|ZP_03674835.1| S-adenosyl-methyltransferase MraW [Borrelia spielmanii A14S] gi|224514359|gb|EEF84675.1| S-adenosyl-methyltransferase MraW [Borrelia spielmanii A14S] Length = 295 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 99/305 (32%), Positives = 170/305 (55%), Gaps = 23/305 (7%) Query: 20 HVPVLLEKV---IALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 H PVLL+ + I L + +D+T G G ++++ + +++ ++RD + Sbjct: 7 HFPVLLDAICKLIEDLPLKSNLIYIDSTLGEGVHAKAILEKYGFLSLVGIERDSQILERA 66 Query: 75 QETMRDYKEQFSLFQATFSQL-QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ +R ++ + + F F +Y + + ++ DLG+S +GFSF + PL Sbjct: 67 KQFLRIFEGRITYFNDWFDNFFANYPLNVKANFILVDLGISMFHYKGSKKGFSFFEDEPL 126 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMR+ S ISA+++VN + DL ++ L E + RI+ AIV+ R+ QTT++L Sbjct: 127 DMRLCSSCSISAAEIVNTFSRYDLESLIYNLSNEHYSRRISKAIVEYRKIKKIQTTKELQ 186 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 S+I K FSK +I+PAT++FQALRI+VN+E+ L + L + L G+L +++FHS Sbjct: 187 SIISKVYPFSKF-KINPATKTFQALRIYVNDELARLKRSLPLWVENLAKDGILAIITFHS 245 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 +EDR+VK FF S S ++ I+KK ++P+ +++ N+ SRSAKLR Sbjct: 246 IEDRIVKDFFKSLSCD---------------LYAKISKKPIIPSFDEIKKNKPSRSAKLR 290 Query: 313 AGMRT 317 A + Sbjct: 291 ALKKI 295 >gi|239624706|ref|ZP_04667737.1| S-adenosyl-methyltransferase MraW [Clostridiales bacterium 1_7_47_FAA] gi|239521092|gb|EEQ60958.1| S-adenosyl-methyltransferase MraW [Clostridiales bacterium 1_7_47FAA] Length = 362 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 107/331 (32%), Positives = 169/331 (51%), Gaps = 31/331 (9%) Query: 3 SKSCKTMSSAIHH---TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG- 58 K +T++ I +G H+ +++++++ L PG+ LDAT G GG+++ K Sbjct: 45 EKYPETVAKVISKGSTPVGMHISIMVKEILDFLEIQPGQTGLDATLGYGGHTQEMLKCLQ 104 Query: 59 --SNVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLG 112 ++ ALD D ++ +E + E ++ Q F+ + + G D V+ DLG Sbjct: 105 GQGHLHALDVDTIEMAKTRERLGKLGYGLEILTIRQLNFADIDQLAAETGPFDFVLADLG 164 Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASR 171 VSSMQID +RGFSF+K GPLD+R+ S GI AS+ + + ++LT +L +E A Sbjct: 165 VSSMQIDNPERGFSFKKDGPLDLRLDSSRGIPASERLRHISREELTGMLIENSDEPYAEE 224 Query: 172 IAHAIVKR-RQSAPFQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEI 225 I+ A+V R ++ TT L I++T+ F K R+FQALRI +N+E Sbjct: 225 ISRAVVNRIKRGDGIDTTTQLRETIEQTLSFIPESDRKEAVKKSCQRTFQALRIDINSEF 284 Query: 226 EELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF 285 E L Q L L GG + V++FHS EDR+VKK F V+ Sbjct: 285 EVLYQFLEKLPDVLAKGGRVAVLTFHSGEDRIVKKSFKDL--------------YRQGVY 330 Query: 286 QSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 I V+ P+ E+ + N R+RS K+R ++ Sbjct: 331 SEIAGDVIRPSAEECSMNSRARSTKMRWAIK 361 >gi|193216628|ref|YP_001999870.1| S-adenosyl-methyltransferase [Mycoplasma arthritidis 158L3-1] gi|263456519|sp|B3PMB4|RSMH_MYCA5 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|193001951|gb|ACF07166.1| S-adenosyl-methyltransferase [Mycoplasma arthritidis 158L3-1] Length = 286 Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats. Identities = 97/291 (33%), Positives = 154/291 (52%), Gaps = 14/291 (4%) Query: 32 LNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMRDYKEQFSLFQ 89 + +D T G G+S K +I D+D A+ + ++ F+L Q Sbjct: 1 MEIKSDGTYVDLTLGRAGHSLEILKKLINGRLICFDKDNEAIKESYKKLQKISPNFTLIQ 60 Query: 90 ATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISAS 145 F L+ + G VDG++ DLGVSS QID RGFS+ + GPLDMRM+ + SA Sbjct: 61 NDFRFLKAELEKLGINEVDGILADLGVSSPQIDDPTRGFSYSQEGPLDMRMNQQNSFSAK 120 Query: 146 DVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNN 205 D+++ + +LT+IL + K A+ +A AIV +R P ++T +L +I+ + Sbjct: 121 DIIDNFDESELTKILIKNADVKLANLVAKAIVAKR---PIKSTSELVEIIKNALPAKIVR 177 Query: 206 RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASR 265 +PA FQALRI VN+E+ L L A + LK G +++++FHS ED +VK FF + Sbjct: 178 EKNPAKAVFQALRIEVNDELGALTAMLADATQLLKKDGKILIITFHSKEDSIVKNFFQKQ 237 Query: 266 SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 V + +P N +++ K++ P++++ N RSRSAKLR + Sbjct: 238 -NYVDPRLNKLPINIQK-IWKQ---KIIFPSEDEKLQNNRSRSAKLRVVKK 283 >gi|116073986|ref|ZP_01471248.1| methyltransferase [Synechococcus sp. RS9916] gi|116069291|gb|EAU75043.1| methyltransferase [Synechococcus sp. RS9916] Length = 305 Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats. Identities = 111/308 (36%), Positives = 159/308 (51%), Gaps = 31/308 (10%) Query: 20 HVPVLLEKVIALLNPAPG-----KVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVS 72 HVPVL E ++ L +P + +DAT G G+S +I LD+DP A S Sbjct: 14 HVPVLAEPLLEALAASPESPWEKGLFIDATLGGAGHSALLLDRYPQLRLIGLDQDPTARS 73 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 Q + Y ++ + F+ DY P+ D V+ DLGVSS Q+D RGFSF+ GP Sbjct: 74 AAQVRLEPYGDRAEIVATNFA---DYQPEAPADLVLADLGVSSPQLDVAARGFSFRLDGP 130 Query: 133 LDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTTQ 189 LDMRM+ G +A++++ + + L ++ GEE+ + RIA I +++ + T Sbjct: 131 LDMRMNPQGGGETAAELIERLEEEPLADLIYAYGEERLSRRIARRIKADLKENGGYAGTA 190 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 DL+ + + RIHPATR+FQALRI VN+E+ L + L+ A L GG+L ++ Sbjct: 191 DLAYAVAGCYPPKARRGRIHPATRTFQALRIAVNDELGVLDRLLQQAPDWLNPGGVLAII 250 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDR VK F IT+K +V + + A N RSRS Sbjct: 251 SFHSLEDRRVKTAFLQDD-----------------RLARITRKPLVAAEAEEAANPRSRS 293 Query: 309 AKLRAGMR 316 AKLR R Sbjct: 294 AKLRLARR 301 >gi|157164915|ref|YP_001466663.1| S-adenosyl-methyltransferase MraW [Campylobacter concisus 13826] gi|112800495|gb|EAT97839.1| S-adenosyl-methyltransferase MraW [Campylobacter concisus 13826] Length = 334 Score = 299 bits (767), Expect = 3e-79, Method: Composition-based stats. Identities = 101/304 (33%), Positives = 161/304 (52%), Gaps = 12/304 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76 H+ VLL++V++ +D T G G+S + N+ IA D+D A++ + Sbjct: 31 PHISVLLDEVLSFFKDLR-GNFIDCTLGYAGHSSAILSQNENLNLIACDKDIEAINFSLK 89 Query: 77 TMRDYKEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + + ++++ FS+L + V G++ D+GVSS+QID DRGF S L Sbjct: 90 KLEPFGSRVKIYKSNFSELISKLSSDEISNVRGILADIGVSSLQIDKDDRGFGLGSSA-L 148 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM G SA DVVN + +L RI GE K AS IA+ I+ R + ++L+ Sbjct: 149 DMRMDKERGFSAYDVVNGYSFDELVRIFRDYGELKNASGIANKIINARNLGEITSAKELA 208 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++I + K + PA +FQA+RI VN E++EL L S EK L+ +++FHS Sbjct: 209 NII--GIAQIKGRGVSPAILAFQAIRIEVNGELDELTNLLDSIEKGGFKDCLVTIITFHS 266 Query: 253 LEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 LEDR+VK+ F + + + + + + +TKK + +Q ++A N RS+SAK Sbjct: 267 LEDRIVKERFKKWANSCICPPGIYRCECGNNHELGEILTKKPLTASQSELAQNSRSKSAK 326 Query: 311 LRAG 314 LR Sbjct: 327 LRVF 330 >gi|226226826|ref|YP_002760932.1| putative S-adenosyl-methyltransferase [Gemmatimonas aurantiaca T-27] gi|263447553|sp|C1A8A2|RSMH_GEMAT RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|226090017|dbj|BAH38462.1| putative S-adenosyl-methyltransferase [Gemmatimonas aurantiaca T-27] Length = 315 Score = 299 bits (767), Expect = 3e-79, Method: Composition-based stats. Identities = 110/310 (35%), Positives = 172/310 (55%), Gaps = 10/310 (3%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPF 69 S+ T HVPVLL ++ +L A +LD T G GG++ +F + G V +DRDP Sbjct: 6 SAPSGRTGTYHVPVLLSEIETMLANAT--TVLDCTLGGGGHTAAFLERGVRVTGVDRDPR 63 Query: 70 AVSCGQETMRDYK--EQFSLFQATFSQLQD--YVPDKGVDGVVFDLGVSSMQIDCGDRGF 125 A++ +E + +Y+ QF A ++ L++ + D DG++ DLGVSS Q D RGF Sbjct: 64 ALAAARERLGEYERSGQFRAVLANYAALEEAGFSTDDRFDGILLDLGVSSHQFDDASRGF 123 Query: 126 SFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184 +F++ PLDMRM + A +++N + DL+ +L +E +A+R+A IV+RR+ P Sbjct: 124 TFREGAPLDMRMGTDADLDAGELLNTIDEVDLSALLRAYADEPRAARMAREIVRRRERRP 183 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 F T DL I+ + + R FQA+RI VN+E+ L + L + L GG+ Sbjct: 184 FATADDLVDAIRAVL--GPRSGAPDFARIFQAVRIAVNDELSGLERALPALRDRLTPGGV 241 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 L ++S+HS EDRLVK F S R + + + +IT+K V T++++ N Sbjct: 242 LAIISYHSGEDRLVKNAFRDWSASCVCPPRQFVCTCRGRPLGDTITRKPVSATEQEIDQN 301 Query: 304 RRSRSAKLRA 313 R+RSA+LRA Sbjct: 302 TRARSARLRA 311 >gi|323452900|gb|EGB08773.1| mraW bacterial methyltransferase-like protein [Aureococcus anophagefferens] Length = 357 Score = 299 bits (767), Expect = 4e-79, Method: Composition-based stats. Identities = 103/322 (31%), Positives = 156/322 (48%), Gaps = 21/322 (6%) Query: 11 SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRD 67 A+ H PV+ + + L +D T G GG+S G ++ +DRD Sbjct: 37 EALPAASAYHTPVMGNECVDWLVTKRDGFYVDGTLGGGGHSSLILAKLGDGGRLVGVDRD 96 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFS---QLQDYVPDKGVDGVVFDLGVSSMQIDCGDRG 124 A+ + + +FS A + + + DGV+ DLGVSS Q+D RG Sbjct: 97 AAAIEAAGDRLAA-DGRFSSVHANYDAGVRRAVEAAGRKADGVLLDLGVSSRQLDDAARG 155 Query: 125 FSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 FSF+ GP+DMRM G +ASD+VN + +DL +L +E A R+A A+V R Sbjct: 156 FSFRGDGPIDMRMDGRDGTTASDLVNGLDERDLAFLLRANADEPNAGRVARALVAAR--- 212 Query: 184 PFQTTQDLSSLIQKTVYFSKNN--------RIHPATRSFQALRIFVNNEIEELAQGLRSA 235 P +T L+ + V K + + R+FQALR+ VN+E L + L Sbjct: 213 PLGSTTALADAVAAAVPRQKRSAPAAHAQAQKKAVARAFQALRVEVNDEFGALERLLLDL 272 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295 + GG ++V+++HSLEDR VK+ F + A R + P F + +K + P Sbjct: 273 PALVAEGGRVVVLTYHSLEDRRVKRIFRDGRLRGDAPRDDYGNKLAP--FAPLHRKALPP 330 Query: 296 TQEDVAFNRRSRSAKLRAGMRT 317 ++ +V N R+RSAKLRA RT Sbjct: 331 SEGEVERNPRARSAKLRAAERT 352 >gi|86160181|ref|YP_466966.1| S-adenosyl-methyltransferase MraW [Anaeromyxobacter dehalogenans 2CP-C] gi|123496850|sp|Q2IG17|RSMH_ANADE RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|85776692|gb|ABC83529.1| methyltransferase [Anaeromyxobacter dehalogenans 2CP-C] Length = 310 Score = 299 bits (767), Expect = 4e-79, Method: Composition-based stats. Identities = 116/302 (38%), Positives = 172/302 (56%), Gaps = 5/302 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H PVL +V+ LL P PG++ LD T G GG+S + G+ VIALD+DP A++ + Sbjct: 7 HEPVLANEVLELLRPRPGELFLDGTLGGGGHSGLLLEAGARVIALDKDPRALAAATARLA 66 Query: 80 DYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + E F ++ F ++ + G VDG + DLGVSS Q+D +RGFSF + GPLDMR Sbjct: 67 RFGEAFRAVRSDFRDAKNVLEALGIGAVDGALVDLGVSSPQLDEAERGFSFSRPGPLDMR 126 Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 M +G + D++ + + ++L RIL GEE A +A AI ++ T L+ ++ Sbjct: 127 MGDTGETLEDLLRRIDERELARILREYGEEPFARPVARAIKAALEAEAPLDTARLAEVVA 186 Query: 197 KTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + +RIHPATR+FQALRI VN+E+ LA L L GG +SFHSLED Sbjct: 187 GAIPRKAWPHRIHPATRTFQALRIAVNDELGALAAWLDGLPGVLAPGGRAAAISFHSLED 246 Query: 256 RLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 R+VK+ F + + + + A F +IT+K V + +++A N R+RSA+LRA Sbjct: 247 RMVKEKFRALTQACTCPPDLPVCACGAKASFAAITRKAVKASDDEIARNPRARSARLRAV 306 Query: 315 MR 316 + Sbjct: 307 EK 308 >gi|197124208|ref|YP_002136159.1| S-adenosyl-methyltransferase MraW [Anaeromyxobacter sp. K] gi|263446708|sp|B4UER3|RSMH_ANASK RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|196174057|gb|ACG75030.1| S-adenosyl-methyltransferase MraW [Anaeromyxobacter sp. K] Length = 310 Score = 299 bits (766), Expect = 5e-79, Method: Composition-based stats. Identities = 115/302 (38%), Positives = 172/302 (56%), Gaps = 5/302 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H PVL +++ LL P PG++ LD T G GG+S + G+ VIALD+DP A++ + Sbjct: 7 HEPVLANEILELLRPRPGELFLDGTLGGGGHSGLLLEAGARVIALDKDPRALAAATARLA 66 Query: 80 DYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + E F ++ F ++ + G VDG + DLGVSS Q+D +RGFSF + GPLDMR Sbjct: 67 RFGEAFRAVRSDFRDAKNVLQALGIAAVDGALVDLGVSSPQLDEAERGFSFSRPGPLDMR 126 Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 M +G + D++ + + ++L RIL GEE A +A A+ ++ T L+ ++ Sbjct: 127 MGDTGETLEDLLRRIDERELARILREYGEEPFARPVARAVKAALETEAPLDTARLAEVVA 186 Query: 197 KTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + +RIHPATR+FQALRI VN+E+ LA L L GG +SFHSLED Sbjct: 187 GAIPRKAWPHRIHPATRTFQALRIAVNDELGALAAWLDGLPGVLAPGGRAAAISFHSLED 246 Query: 256 RLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 R+VK+ F + + + + A F +IT+K V + E++A N R+RSA+LRA Sbjct: 247 RMVKEKFRALTQACTCPPDLPVCACGAKASFAAITRKAVKASDEEIARNPRARSARLRAV 306 Query: 315 MR 316 + Sbjct: 307 EK 308 >gi|220918988|ref|YP_002494292.1| S-adenosyl-methyltransferase MraW [Anaeromyxobacter dehalogenans 2CP-1] gi|263446697|sp|B8J8E0|RSMH_ANAD2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|219956842|gb|ACL67226.1| S-adenosyl-methyltransferase MraW [Anaeromyxobacter dehalogenans 2CP-1] Length = 310 Score = 299 bits (766), Expect = 5e-79, Method: Composition-based stats. Identities = 115/302 (38%), Positives = 172/302 (56%), Gaps = 5/302 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H PVL +++ LL P PG++ LD T G GG+S + G+ VIALD+DP A++ + Sbjct: 7 HEPVLANEILELLRPRPGELFLDGTLGGGGHSGLLLEAGARVIALDKDPRALAAATARLA 66 Query: 80 DYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + E F ++ F ++ + G VDG + DLGVSS Q+D +RGFSF + GPLDMR Sbjct: 67 RFGEAFRAVRSDFRDAKNVLEALGIAAVDGALVDLGVSSPQLDEAERGFSFSRPGPLDMR 126 Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 M +G + D++ + + ++L RIL GEE A +A A+ ++ T L+ ++ Sbjct: 127 MGDTGETLEDLLRRIDERELARILREYGEEPFARPVARAVKAALETEAPLDTARLAEVVA 186 Query: 197 KTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + +RIHPATR+FQALRI VN+E+ LA L L GG +SFHSLED Sbjct: 187 GAIPRKAWPHRIHPATRTFQALRIAVNDELGALAAWLDGLPGVLAPGGRAAAISFHSLED 246 Query: 256 RLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 R+VK+ F + + + + A F +IT+K V + E++A N R+RSA+LRA Sbjct: 247 RMVKEKFRALTQACTCPPDLPVCACGAKASFAAITRKAVKASDEEIARNPRARSARLRAV 306 Query: 315 MR 316 + Sbjct: 307 EK 308 >gi|78213939|ref|YP_382718.1| methyltransferase [Synechococcus sp. CC9605] gi|123577439|sp|Q3AGW9|RSMH_SYNSC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|78198398|gb|ABB36163.1| methyltransferase [Synechococcus sp. CC9605] Length = 294 Score = 299 bits (765), Expect = 6e-79, Method: Composition-based stats. Identities = 109/308 (35%), Positives = 161/308 (52%), Gaps = 28/308 (9%) Query: 20 HVPVLLEKVIALLN--PAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQ 75 HVPVL + V+ P P +++DAT G GG+S + +I LD+D A + Sbjct: 6 HVPVLADAVLDAARRIPRPDGLLIDATLGGGGHSALLLEQHPGLRLIGLDQDATARAAAA 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 E + + ++ S+ F+ DYVP + V+ DLGVSS Q+D +RGFSF+ GPLDM Sbjct: 66 ERLASFGDRVSIVATNFA---DYVPPEPAVMVLADLGVSSPQLDVAERGFSFRLDGPLDM 122 Query: 136 RMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTTQDLS 192 RM+ G +A++++++ +L ++ GEE+ + RIA I + + T L+ Sbjct: 123 RMNAGGEGETAAELIDRLEENELADLIYGYGEERLSRRIARRIKADLKDRGSYDGTAALA 182 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + + RIHPATR+FQALRI VN+E+ L + L+ A L+ GLL ++SFH Sbjct: 183 YAVAGCYPPKSRRGRIHPATRTFQALRIAVNDELGVLDRLLQQAPDWLEPDGLLGIISFH 242 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR VK F Q IT+K VV T+++ N R+RSAK Sbjct: 243 SLEDRRVKTAF-----------------LRDERLQRITRKPVVATEQEEEANPRTRSAKW 285 Query: 312 RAGMRTVE 319 R R Sbjct: 286 RVAQRLAA 293 >gi|263447881|sp|A7ZD05|RSMH_CAMC1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 307 Score = 299 bits (765), Expect = 6e-79, Method: Composition-based stats. Identities = 101/304 (33%), Positives = 161/304 (52%), Gaps = 12/304 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76 H+ VLL++V++ +D T G G+S + N+ IA D+D A++ + Sbjct: 4 PHISVLLDEVLSFFKDLR-GNFIDCTLGYAGHSSAILSQNENLNLIACDKDIEAINFSLK 62 Query: 77 TMRDYKEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + + ++++ FS+L + V G++ D+GVSS+QID DRGF S L Sbjct: 63 KLEPFGSRVKIYKSNFSELISKLSSDEISNVRGILADIGVSSLQIDKDDRGFGLGSSA-L 121 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM G SA DVVN + +L RI GE K AS IA+ I+ R + ++L+ Sbjct: 122 DMRMDKERGFSAYDVVNGYSFDELVRIFRDYGELKNASGIANKIINARNLGEITSAKELA 181 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++I + K + PA +FQA+RI VN E++EL L S EK L+ +++FHS Sbjct: 182 NII--GIAQIKGRGVSPAILAFQAIRIEVNGELDELTNLLDSIEKGGFKDCLVTIITFHS 239 Query: 253 LEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 LEDR+VK+ F + + + + + + +TKK + +Q ++A N RS+SAK Sbjct: 240 LEDRIVKERFKKWANSCICPPGIYRCECGNNHELGEILTKKPLTASQSELAQNSRSKSAK 299 Query: 311 LRAG 314 LR Sbjct: 300 LRVF 303 >gi|311114349|ref|YP_003985570.1| S-adenosyl-methyltransferase MraW [Gardnerella vaginalis ATCC 14019] gi|310945843|gb|ADP38547.1| S-adenosyl-methyltransferase MraW [Gardnerella vaginalis ATCC 14019] Length = 358 Score = 298 bits (764), Expect = 7e-79, Method: Composition-based stats. Identities = 110/327 (33%), Positives = 173/327 (52%), Gaps = 20/327 (6%) Query: 1 MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM 57 M+ K +S+ H PVLL+ + L++PA V++D T G G++ +F K Sbjct: 1 MKGDPMKDLST-------IHAPVLLDDCVNLVSPALNHKNSVVVDCTLGLAGHATAFLKS 53 Query: 58 GS--NVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQDYVPD---KGVDGVVFD 110 ++ +DRD A+ + MR+ E+F A F ++ + D +D D Sbjct: 54 APLATLVGIDRDGEALELAIKRMREEGLDERFIPVHAAFDEVDKVLEDLAIYHIDAAFMD 113 Query: 111 LGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQA 169 LG+SS+QID DRGFS+ + LDMRM + I+A+ ++ + L I G+E+ + Sbjct: 114 LGLSSLQIDEEDRGFSYSHNTALDMRMDTTQSITAATILATYDSHKLANIFREYGQERFS 173 Query: 170 SRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELA 229 IA IV+ R+ P T+ L L+ + S +PA R FQALRI VN E+++LA Sbjct: 174 GPIARKIVQVREETPITTSGQLVELVDNVIPRSHRAPGNPAKRVFQALRIEVNGELDKLA 233 Query: 230 QGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFAS-RSGKVMAVRHMIPSNAHPAVFQSI 288 + L L GG ++V S+HSLED VK+F + V A ++P++A P F+S+ Sbjct: 234 RTLPKLALRLNQGGRIVVESYHSLEDIAVKRFMNNGLEVDVPANMPIVPADAQP-FFRSL 292 Query: 289 TKKVVVPTQEDVAFNRRSRSAKLRAGM 315 T+ V ++E++A N RS S +LRA Sbjct: 293 TRGAVKASKEEIANNTRSSSVRLRAVE 319 >gi|294791087|ref|ZP_06756245.1| S-adenosyl-methyltransferase MraW [Scardovia inopinata F0304] gi|294458984|gb|EFG27337.1| S-adenosyl-methyltransferase MraW [Scardovia inopinata F0304] Length = 342 Score = 298 bits (763), Expect = 9e-79, Method: Composition-based stats. Identities = 106/310 (34%), Positives = 165/310 (53%), Gaps = 16/310 (5%) Query: 20 HVPVLLEKVIALLNPAPGK-------VILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70 H PVLL++ L+ + VI+D T G G++ +F S +I +DRD A Sbjct: 9 HTPVLLDECCQLVCGGLDQAAADRTPVIVDCTLGLAGHASAFLARASRARLIGIDRDREA 68 Query: 71 VSCGQETMRD--YKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGF 125 + + M++ + ++F A F + ++G VD V DLG+SS+QID DRGF Sbjct: 69 LDLATDRMKNLGFADRFIPLHAAFDDFSSLMENQGLDTVDAVFMDLGLSSLQIDESDRGF 128 Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA- 183 S+ PLDMRM ++A D++ +++ ++LTRI G+E+ + +IA A+V++R Sbjct: 129 SYSHDAPLDMRMDTDQTVTAQDILRESSKEELTRIFRHYGQERYSRQIASALVRQRDKGH 188 Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 P +TT L L+ + V S + +PA R FQALRI VN E+++LA L L GG Sbjct: 189 PVETTGQLVQLVDRVVPKSHRSGGNPAKRVFQALRIQVNGELDKLAATLPQIALHLSLGG 248 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 L+V S+HSLED++VK F A + + + F +T + Q++ N Sbjct: 249 RLVVESYHSLEDKIVKSFMAQGLQANLPPGLPVIPDDAQPFFTDLTHGAIKADQDEAEHN 308 Query: 304 RRSRSAKLRA 313 RS S +LRA Sbjct: 309 SRSTSVRLRA 318 >gi|308235562|ref|ZP_07666299.1| S-adenosyl-methyltransferase MraW [Gardnerella vaginalis ATCC 14018] Length = 353 Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats. Identities = 107/308 (34%), Positives = 167/308 (54%), Gaps = 13/308 (4%) Query: 20 HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 H PVLL+ + L++PA V++D T G G++ +F K ++ +DRD A+ Sbjct: 8 HAPVLLDDCVNLVSPALNHKNSVVVDCTLGLAGHATAFLKSAPLATLVGIDRDGEALELA 67 Query: 75 QETMRDYK--EQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 + MR+ E+F A F ++ + D +D DLG+SS+QID DRGFS+ Sbjct: 68 IKRMREEGLDERFIPVHAAFDEVDKVLEDLAIYHIDAAFMDLGLSSLQIDEEDRGFSYSH 127 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 + LDMRM + I+A+ ++ + L I G+E+ + IA IV+ R+ P T+ Sbjct: 128 NTALDMRMDTTQSITAATILATYDSHKLANIFREYGQERFSGPIARKIVQVREETPITTS 187 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L L+ + S +PA R FQALRI VN E+++LA+ L L GG ++V Sbjct: 188 GQLVELVDNVIPRSHRAPGNPAKRVFQALRIEVNGELDKLARTLPKLALRLNQGGRIVVE 247 Query: 249 SFHSLEDRLVKKFFAS-RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 S+HSLED VK+F + V A ++P++A P F+S+T+ V ++E++A N RS Sbjct: 248 SYHSLEDIAVKRFMNNGLEVDVPANMPIVPADAQP-FFRSLTRGAVKASKEEIANNTRSS 306 Query: 308 SAKLRAGM 315 S +LRA Sbjct: 307 SVRLRAVE 314 >gi|113954684|ref|YP_731835.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. CC9311] gi|123327560|sp|Q0I6T7|RSMH_SYNS3 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|113882035|gb|ABI46993.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. CC9311] Length = 310 Score = 297 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 105/308 (34%), Positives = 162/308 (52%), Gaps = 31/308 (10%) Query: 20 HVPVLLEKVIALLNPAP-----GKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVS 72 HVPVL E ++ +L+ P ++DAT G GG+S+ + ++ LD+DP A + Sbjct: 14 HVPVLAETLMQVLSEQPPILWQNTAVIDATLGGGGHSKLILERFPGVRLVGLDQDPSARA 73 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + ++ + F+ + P + V V+ DLGVSS Q+D RGFSF+ GP Sbjct: 74 AAASRLEPFLDRVQIVPVNFAAFE---PPEPVSLVLADLGVSSPQLDVASRGFSFRLDGP 130 Query: 133 LDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ-SAPFQTTQ 189 LDMRM+ G +A +++ + +V L ++ GEE+ + RIA I + + T Sbjct: 131 LDMRMNPVAGGETAEEMIARLDVNALADLIYAFGEERLSRRIARRIKADLEAEGAYAGTA 190 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L+ + + RIHPATR+FQALRI VN+E+ L + L++A LK GG+L ++ Sbjct: 191 ALAYAVAGCYPPKARRGRIHPATRTFQALRIAVNDELGVLDRLLQTAPGWLKPGGVLAII 250 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDR VK F + +T+K + ++++ A N RSRS Sbjct: 251 SFHSLEDRRVKTAF-----------------LQEERLERVTRKPFMASEQEQADNPRSRS 293 Query: 309 AKLRAGMR 316 AKLR R Sbjct: 294 AKLRIARR 301 >gi|332027021|gb|EGI67117.1| Putative S-adenosyl-L-methionine-dependent methyltransferase [Acromyrmex echinatior] Length = 325 Score = 297 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 117/324 (36%), Positives = 175/324 (54%), Gaps = 30/324 (9%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQETMRDY 81 + ++V+ + P+PGK +D TFGAGG++ + N+ ALDRDP C ++ + Y Sbjct: 1 MAQEVLTYIAPSPGKTYIDMTFGAGGHATKLLEHSPNIKIFALDRDPLGFECAKQLSQRY 60 Query: 82 KEQFSLFQATFSQLQDYVP-----DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 Q FS+L + + +DG++FD G SSMQ D RGFS K GPLDMR Sbjct: 61 PGQVIPLLGKFSELPQLLEPYNIKENSIDGILFDFGCSSMQFDTASRGFSLSKDGPLDMR 120 Query: 137 MS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQTTQDL 191 M ++A++V+ +A +DLTRI+ + G+EK+A +IA AI+ R +TT++L Sbjct: 121 MDGFRCPKQLTAANVLERATEEDLTRIIKVYGQEKRAKKIARAIIDSRYMFKKLETTKEL 180 Query: 192 SSLIQKTVYFSKNNRI-----HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 + LI+ T+ H AT++FQALRIFVNNE+ E+ G+ A+ LK G LI Sbjct: 181 AQLIESTLDGEIRRDSLGRFSHSATKTFQALRIFVNNELNEINYGILLAQIYLKLSGCLI 240 Query: 247 VVSFHSLEDRLVKKFFA-------------SRSGKVMAVRHMIPSNAHPAVFQSITKKVV 293 +SFHSLED +VK+ + + ++ + K V+ Sbjct: 241 TISFHSLEDTIVKRHISGNITDNVANTVALKYAHYGKTFDKDEFERLTKIPWKMMHKHVL 300 Query: 294 VPTQEDVAFNRRSRSAKLRAGMRT 317 +PT E++ N RSRSAKLRA M+ Sbjct: 301 IPTAEEIETNPRSRSAKLRAIMKV 324 >gi|318040652|ref|ZP_07972608.1| 16S rRNA m(4)C1402 methyltranserfase [Synechococcus sp. CB0101] Length = 309 Score = 297 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 113/318 (35%), Positives = 160/318 (50%), Gaps = 32/318 (10%) Query: 11 SAIHHTIGDHVPVLLEKVIALLNPAPG-------KVILDATFGAGGYSRSFCKMGSNV-- 61 DHVPVL E V+A G V++D T G GG+S + + Sbjct: 6 DPPDSATFDHVPVLAEPVLAGFAELEGLLDQRGEGVLIDCTLGGGGHSALLLEAHPRLRL 65 Query: 62 IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCG 121 I LD+DP A + + + + ++ + F+ Y P + V V+ DLGVSS Q+D Sbjct: 66 IGLDQDPTARAAAAQRLAPFGDRVEIVATNFA---TYTPAEPVVAVLADLGVSSPQLDVA 122 Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR- 179 +RGFSF+ GPLDMRM+ G +A+ ++++ + +L ++ GEE+ + RIA I Sbjct: 123 ERGFSFRLDGPLDMRMNPDAGETAAALIDRLDETELADLIYAYGEERLSRRIARRIKHDL 182 Query: 180 RQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 + + T L+ + + RIHPATR+FQALRI VN+E+ L + L SA Sbjct: 183 AEQGAYGGTAALAYAVAGCYPPKARRGRIHPATRTFQALRIAVNDELGVLDRLLSSAPDW 242 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 L GGL V+SFHSLEDR VK F S Q IT+K V+ T E Sbjct: 243 LVPGGLFGVISFHSLEDRRVKTAFVSDE-----------------RLQRITRKAVMATTE 285 Query: 299 DVAFNRRSRSAKLRAGMR 316 + N RSRSA+LR R Sbjct: 286 EEERNPRSRSARLRLAHR 303 >gi|118474367|ref|YP_891757.1| S-adenosyl-methyltransferase MraW [Campylobacter fetus subsp. fetus 82-40] gi|263445750|sp|A0RNH4|RSMH_CAMFF RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|118413593|gb|ABK82013.1| S-adenosyl-methyltransferase MraW [Campylobacter fetus subsp. fetus 82-40] Length = 307 Score = 297 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 90/301 (29%), Positives = 158/301 (52%), Gaps = 8/301 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76 H+PVLL+ V+ ILD T G GG+S + N+ IA DRD ++S + Sbjct: 4 PHIPVLLKPVLNSFKDIKNGTILDCTLGYGGHSEAILISNPNLKIIACDRDSESLSFCKA 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 Y ++ ++++ F+ + + + + + G++ D+GVSS+Q+D +RGFS + LDMR Sbjct: 64 KFEKYSDRIKIYKSNFAGILNKIDHEDIRGILADIGVSSLQLDLDERGFSINSNN-LDMR 122 Query: 137 MSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195 M + SA +++N + L I E A +A IV R +P ++ ++LSS+I Sbjct: 123 MDKNQTFSAKELINSYSKDQLADIFYKYAELPNAKSLAQKIVDARDKSPIKSAKELSSII 182 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 ++ KN + A +FQA+RI VN E++EL L + + +L ++SFHSLED Sbjct: 183 GRSNL--KNRSVSIAILAFQAIRIEVNKELDELNNLLNLIKSSKINNAILDIISFHSLED 240 Query: 256 RLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 ++ K F + + + ++ + +TKK + P+++++ N RS AK+R Sbjct: 241 KIAKSTFKEWEKSCICDNFVMKCECGNNHSIGKILTKKPITPSEDEIKQNPRSSCAKMRI 300 Query: 314 G 314 Sbjct: 301 F 301 >gi|313906115|ref|ZP_07839465.1| S-adenosyl-methyltransferase MraW [Eubacterium cellulosolvens 6] gi|313469055|gb|EFR64407.1| S-adenosyl-methyltransferase MraW [Eubacterium cellulosolvens 6] Length = 356 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 102/334 (30%), Positives = 160/334 (47%), Gaps = 34/334 (10%) Query: 3 SKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---S 59 + + S + G H+P+++++++ L PG LD T G GG+S ++ Sbjct: 37 GSEIEHIISKGNTPAGMHIPIMVDEILDCLKIEPGMTGLDCTLGYGGHSSRMLELLQGSG 96 Query: 60 NVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSS 115 ++ +LD DP + E MR E ++ F+ + G D V+ DLGVSS Sbjct: 97 HLYSLDVDPIEIQKTTERMRAKGFSEEIWTPVHTNFANIDRVCEQYGPFDFVLADLGVSS 156 Query: 116 MQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAH 174 MQID +RGFS++ GPLD+R + S G SA++ + + ++L +L +E A IA Sbjct: 157 MQIDNPERGFSYKTDGPLDLRFNPSKGESAAERLRSLDTEELIGLLIDNSDEPYAEEIAA 216 Query: 175 AIVKR-RQSAPFQTTQDLSSLIQKTV----YFSKNNR-------IHPATRSFQALRIFVN 222 A+ R+ P TT L LI KT+ + R FQALRI VN Sbjct: 217 AVASAFRKKEPLDTTTALRELITKTLLEDTPLRNALKTDQTEAVKKSCARVFQALRIDVN 276 Query: 223 NEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHP 282 +E E L + + LK GG +++FHS EDR+VKK F N Sbjct: 277 SEFEVLVEFMDKLPHILKEGGRAAILTFHSGEDRIVKKEFKR--------------NQKD 322 Query: 283 AVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 ++ +++ V+ P++E+ N R+ S KLR +R Sbjct: 323 GLYTEVSRDVIRPSKEECFRNPRAHSTKLRWAIR 356 >gi|291523776|emb|CBK89363.1| S-adenosyl-methyltransferase MraW [Eubacterium rectale DSM 17629] Length = 349 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 95/326 (29%), Positives = 167/326 (51%), Gaps = 28/326 (8%) Query: 5 SCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNV 61 + + + S + G H+ ++++++I L+ PG+ DAT G GG++R+ + ++ Sbjct: 36 TIEHVISKGNTPAGMHISIMVKEIIDFLDIKPGQTGFDATLGYGGHTRAMLEKLEGQGHM 95 Query: 62 IALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQ 117 A D DP ++ + + + ++ F + + + G D ++ DLGVSSMQ Sbjct: 96 FATDVDPIESEKTKKRLAEAGFGEDILTIKLQNFCTIDEIAKEVGGFDFILADLGVSSMQ 155 Query: 118 IDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 ID +RGFSF+ GPLD+R++ + GISA++ ++ + ++L+ +L +E +A AI Sbjct: 156 IDNPERGFSFKVDGPLDLRLNPNAGISAAERLDNISREELSGMLYENSDEPYCEELAKAI 215 Query: 177 VKR-RQSAPFQTTQDLSSLIQKTVYFSKNNRIH-----PATRSFQALRIFVNNEIEELAQ 230 R+ TT L +I++T+ F R+FQALRI VN+E E L + Sbjct: 216 TDEIRKGNRIDTTTKLRHIIEQTLDFLPEKDKKDIIKKTCQRTFQALRIDVNHEFEVLYE 275 Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK 290 + ALK GG +++FHS ED+LVKK + ++ +K Sbjct: 276 FMEKLPGALKPGGRAAILTFHSGEDKLVKKALK--------------AGYKAGIYSDYSK 321 Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMR 316 V+ P+ ++ A N R+RS K+R +R Sbjct: 322 DVIRPSAQECAQNGRARSTKMRWAVR 347 >gi|291528759|emb|CBK94345.1| S-adenosyl-methyltransferase MraW [Eubacterium rectale M104/1] Length = 349 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 95/326 (29%), Positives = 167/326 (51%), Gaps = 28/326 (8%) Query: 5 SCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNV 61 + + + S + G H+ ++++++I L+ PG+ DAT G GG++R+ + ++ Sbjct: 36 TIEHVISKGNTPAGMHISIMVKEIIDFLDIKPGQTGFDATLGYGGHTRAMLEKLEGHGHM 95 Query: 62 IALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQ 117 A D DP ++ + + + ++ F + + + G D ++ DLGVSSMQ Sbjct: 96 FATDVDPIESEKTKKRLAEAGFGEDILTIKLQNFCTIDEIAKEVGGFDFILADLGVSSMQ 155 Query: 118 IDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 ID +RGFSF+ GPLD+R++ + GISA++ ++ + ++L+ +L +E +A AI Sbjct: 156 IDNPERGFSFKVDGPLDLRLNPNAGISAAERLDNISREELSGMLYENSDEPYCEELAKAI 215 Query: 177 VKR-RQSAPFQTTQDLSSLIQKTVYFSKNNRIH-----PATRSFQALRIFVNNEIEELAQ 230 R+ TT L +I++T+ F R+FQALRI VN+E E L + Sbjct: 216 TDEIRKGNRIDTTTKLRHIIEQTLDFLPEKDKKDIIKKTCQRTFQALRIDVNHEFEVLYE 275 Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK 290 + ALK GG +++FHS ED+LVKK + ++ +K Sbjct: 276 FMEKLPGALKPGGRAAILTFHSGEDKLVKKALK--------------AGYKAGIYSDYSK 321 Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMR 316 V+ P+ ++ A N R+RS K+R +R Sbjct: 322 DVIRPSAQECAQNGRARSTKMRWAVR 347 >gi|295111738|emb|CBL28488.1| S-adenosyl-methyltransferase MraW [Synergistetes bacterium SGP1] Length = 303 Score = 296 bits (759), Expect = 3e-78, Method: Composition-based stats. Identities = 109/311 (35%), Positives = 167/311 (53%), Gaps = 25/311 (8%) Query: 17 IGDHVPVLLEKVIALLN----PAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFA 70 + H PVLL +V++ L+ P I+D T G GGYS + + V +DRDP A Sbjct: 1 METHEPVLLPEVLSFLSEASEPRRALRIVDGTLGLGGYSEAILRAFPDGRVWGVDRDPDA 60 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVP-DKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 + + + + +F A F + + + D VFDLGVS++Q+ RGFSFQ+ Sbjct: 61 LRLAKGRLSAFAPRFCAVHANFGDIAGVLEGEAPFDAFVFDLGVSNLQLTEAARGFSFQQ 120 Query: 130 SGPLDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA-PFQ 186 GPLDMRM G SA++V++ + +L RI G+E+ + RIA+ I++RR + Sbjct: 121 DGPLDMRMDPGGGAPSAAEVLSGLSADELARIFWEYGDERYSRRIANGIIQRRARGLRLE 180 Query: 187 TTQDLSSLIQKTVYFS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 TT +L +LI++ + + HPA R FQALRIFVN+E+ + L + G + Sbjct: 181 TTGELVTLIREVLPAPVQRKMGTHPARRVFQALRIFVNDELSAIESMLATLPTLAGEGCV 240 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 +VVS+HSLEDR+VK F S + + +++T+ ++P +E+ N Sbjct: 241 AVVVSYHSLEDRIVKHRFRSWEKE-------------KGLGRALTRHPLLPQEEERTRNY 287 Query: 305 RSRSAKLRAGM 315 RSRSAKLRA Sbjct: 288 RSRSAKLRAFR 298 >gi|33864313|ref|NP_895873.1| S-adenosyl-methyltransferase MraW [Prochlorococcus marinus str. MIT 9313] gi|42559451|sp|Q7V4B2|RSMH_PROMM RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|33641093|emb|CAE22222.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT 9313] Length = 310 Score = 296 bits (759), Expect = 3e-78, Method: Composition-based stats. Identities = 110/325 (33%), Positives = 166/325 (51%), Gaps = 30/325 (9%) Query: 10 SSAIHHTIGDHVPVLLEKV---IALL--NPAPGKVILDATFGAGGYSRSFCKMGS--NVI 62 SS + H+ V+ + V +A L G +I+DAT G GG+S + +I Sbjct: 4 SSINSDSGFKHLSVMEDAVSQPVAALPAELLVGGLIIDATLGGGGHSALLLERHPDLRLI 63 Query: 63 ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGD 122 LD+DP A + E + + ++ ++ F + V V+ DLGVSS Q+D Sbjct: 64 GLDQDPTARAAAAERLALFGDRVTIVATNFVDFSP--AEPAV-VVMADLGVSSPQLDVAQ 120 Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-R 180 RGFSF+ GPLDMRM+ G +A++++ + +L ++ GEE+ + RIA I Sbjct: 121 RGFSFRLDGPLDMRMNPQVGETAAELIGRLEETELADLIYAYGEERLSRRIARRIKHDLA 180 Query: 181 QSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 + P+ T L+ + ++ RIHPATR+FQALRI VNNE++ L + L+ A L Sbjct: 181 EQGPYAGTAALAYAVAGCYPPKARHGRIHPATRTFQALRIAVNNELDALDRFLQKAPDWL 240 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 GGLL V+SFHSLEDR VK F + +T+K +V ++ + Sbjct: 241 VPGGLLAVISFHSLEDRRVKTAF-----------------LRDQRLERLTRKPLVASEME 283 Query: 300 VAFNRRSRSAKLRAGMRTVERSIED 324 +A N RSRSAK R R + + D Sbjct: 284 IAANPRSRSAKCRFARRLPQATTAD 308 >gi|124024411|ref|YP_001018718.1| S-adenosyl-methyltransferase MraW [Prochlorococcus marinus str. MIT 9303] gi|262824953|sp|A2CD93|RSMH_PROM3 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|123964697|gb|ABM79453.1| Predicted S-adenosylmethionine-dependent methyltransferase [Prochlorococcus marinus str. MIT 9303] Length = 310 Score = 296 bits (759), Expect = 3e-78, Method: Composition-based stats. Identities = 108/325 (33%), Positives = 163/325 (50%), Gaps = 30/325 (9%) Query: 10 SSAIHHTIGDHVPVLLEKV---IALL--NPAPGKVILDATFGAGGYSRSFCKMGS--NVI 62 SS + H+ V+ + V +A L G +++DAT G GG+S + +I Sbjct: 4 SSINSDSGFKHLSVMADAVSQPVAALPAELLDGGLMIDATLGGGGHSALLLERHPDLRLI 63 Query: 63 ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGD 122 LD+DP A + E + + ++ + F + V V+ DLGVSS Q+D Sbjct: 64 GLDQDPTARAAAAERLALFGDRVKIVATNFVDFSP--AEPAV-VVMADLGVSSPQLDVAK 120 Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-R 180 RGFSF+ GPLDMRM+ G +A++++ + +L ++ GEE+ + RIA I Sbjct: 121 RGFSFRLDGPLDMRMNPQVGETAAELIGRLEETELADLIYAYGEERLSRRIARRIKHDLA 180 Query: 181 QSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 + P+ T L+ + + RIHPATR+FQALRI VN+E++ L + L+ A L Sbjct: 181 EQGPYAGTAALAYAVAGCYPPKARRGRIHPATRTFQALRIAVNDELDALDRFLQKAPDWL 240 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 GGLL V+SFHSLEDR VK F + +T+K +V ++ + Sbjct: 241 VPGGLLAVISFHSLEDRRVKTAF-----------------LRDQRLERLTRKPLVASEME 283 Query: 300 VAFNRRSRSAKLRAGMRTVERSIED 324 +A N RSRSAK R R + D Sbjct: 284 IAANPRSRSAKCRFARRLPQAMTAD 308 >gi|224542006|ref|ZP_03682545.1| hypothetical protein CATMIT_01179 [Catenibacterium mitsuokai DSM 15897] gi|224525063|gb|EEF94168.1| hypothetical protein CATMIT_01179 [Catenibacterium mitsuokai DSM 15897] Length = 348 Score = 296 bits (759), Expect = 3e-78, Method: Composition-based stats. Identities = 97/326 (29%), Positives = 161/326 (49%), Gaps = 28/326 (8%) Query: 5 SCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNV 61 + + + S G H+ +++++++ L+ PG++ LD T G GG+S + ++ Sbjct: 35 TIEKVISKGSTPAGMHISIMVDEILEFLDIQPGQIGLDCTLGYGGHSSKMMEKLEGQGHL 94 Query: 62 IALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQ 117 LD D + E +R+ + F+ F + G D V+ DLGVSSMQ Sbjct: 95 YGLDIDTIEIEKTTERLRNKGYGEDIFTPILTNFRNIDQVSEKYGPFDFVLADLGVSSMQ 154 Query: 118 IDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 ID +RGFS++K+GPLD+R++ +G A +++ + ++L IL +E A +A I Sbjct: 155 IDNPERGFSYKKNGPLDLRLNPKAGRPAYEILKDLSREELEHILTENSDEPYADILAKNI 214 Query: 177 VKR-RQSAPFQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQ 230 R +TTQ L +I KT+ F K+ A R FQALRI VN E E L Sbjct: 215 YSFIRSGMEVETTQQLYKIIDKTLSFVTDKNRKDIVNKTAARVFQALRIEVNQEFEVLYD 274 Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK 290 + LK GG +++FHS EDR+VKK F + ++ + + Sbjct: 275 FVEKLPLILKPGGKAAILTFHSGEDRIVKKSFKELKNLGI--------------YEDVCR 320 Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMR 316 V+ P++E+ N R++S K+R ++ Sbjct: 321 NVIRPSREECHRNSRAKSTKMRWAIK 346 >gi|225551942|ref|ZP_03772882.1| S-adenosyl-methyltransferase MraW [Borrelia sp. SV1] gi|225370940|gb|EEH00370.1| S-adenosyl-methyltransferase MraW [Borrelia sp. SV1] Length = 296 Score = 296 bits (759), Expect = 3e-78, Method: Composition-based stats. Identities = 97/305 (31%), Positives = 168/305 (55%), Gaps = 24/305 (7%) Query: 20 HVPVLLEKV---IALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 H PVLL+ + I L + +D+T G G ++++ + +++ ++RDP + Sbjct: 7 HFPVLLDAICKLIEDLPVKSDLIYIDSTLGEGVHAKAILEKYDFLSLVGIERDPQILERA 66 Query: 75 QETMRDYKEQFSLFQATFSQLQ-DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + ++E+ + F F +Y + + ++ DLG+S +GFSF + PL Sbjct: 67 KHFLSIFEERITYFNDWFDNFFVNYPLNVKANFILVDLGISMFHYKGSKKGFSFLEDEPL 126 Query: 134 DMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 DMR+ S ISAS++VN + DL ++ L E + RI+ AI++ R+ +TT++L Sbjct: 127 DMRLCSSSCKISASEIVNTFSKYDLEALIYDLSNEHYSRRISKAIIEYRKIKKIETTKEL 186 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 S+I K FSK +I+PAT++FQALRI+VN+E+ L + L + L G+L +++FH Sbjct: 187 QSIISKVYPFSKV-KINPATKTFQALRIYVNDELARLKRSLPFWVENLAKDGILAIITFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 S+EDR+VK FF S ++ I+KK ++P+ +++ N+ SRSAKL Sbjct: 246 SIEDRIVKDFFGGLSCD---------------LYAKISKKPIMPSFDEIKKNKPSRSAKL 290 Query: 312 RAGMR 316 R + Sbjct: 291 RVIKK 295 >gi|294787094|ref|ZP_06752348.1| S-adenosyl-methyltransferase MraW [Parascardovia denticolens F0305] gi|315226746|ref|ZP_07868534.1| S-adenosyl-methyltransferase MraW [Parascardovia denticolens DSM 10105] gi|294485927|gb|EFG33561.1| S-adenosyl-methyltransferase MraW [Parascardovia denticolens F0305] gi|315120878|gb|EFT84010.1| S-adenosyl-methyltransferase MraW [Parascardovia denticolens DSM 10105] Length = 348 Score = 296 bits (758), Expect = 3e-78, Method: Composition-based stats. Identities = 108/306 (35%), Positives = 159/306 (51%), Gaps = 10/306 (3%) Query: 20 HVPVLLEKVIALL-NPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQE 76 H PVLL+ + L+ + +I+D T G G++ +F + +I +DRD A++ E Sbjct: 8 HTPVLLDDCVRLITDGRQAPLIVDCTLGLAGHASAFLQADPQARLIGIDRDQEALTLATE 67 Query: 77 TMRDYK--EQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 MRD ++F+ A F + ++G VD V DLG+SS+QID DRGFS+ Sbjct: 68 RMRDLGLSDRFTPVHAAFDSFSQVLDEQGIKTVDAVFMDLGLSSLQIDENDRGFSYSHDA 127 Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF-QTTQ 189 PLDMRM ++A DV+ +DL RI G+E+ A IA +VK R+ ++T Sbjct: 128 PLDMRMDPGQSLTARDVLLTYGRQDLARIFREYGQERFAGPIASRLVKAREEGETPRSTG 187 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 L +L+ + + + +PA R FQALRI VN E+++L L A L GG L+V S Sbjct: 188 QLVALVDQVIPRAHRAPGNPAKRVFQALRIEVNGELDKLRMTLPQAACRLNLGGCLVVES 247 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 +HSLEDR+ K F AS + + F +T+ V Q + A N RS S Sbjct: 248 YHSLEDRITKTFMASGIHADVPAGLPVIPQEAQPFFADLTRGAVKAGQAEAAHNSRSTSV 307 Query: 310 KLRAGM 315 +LRA Sbjct: 308 RLRAVE 313 >gi|317121700|ref|YP_004101703.1| S-adenosyl-methyltransferase MraW [Thermaerobacter marianensis DSM 12885] gi|315591680|gb|ADU50976.1| S-adenosyl-methyltransferase MraW [Thermaerobacter marianensis DSM 12885] Length = 342 Score = 296 bits (758), Expect = 4e-78, Method: Composition-based stats. Identities = 119/322 (36%), Positives = 169/322 (52%), Gaps = 36/322 (11%) Query: 12 AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS------------ 59 A HVPVLL +V+A L P PG +D + G Sbjct: 38 ATAPDGAPHVPVLLREVVAYLAPRPGGRYVD---------GTVGAGGHAAAVLAAAGGEA 88 Query: 60 NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSM 116 ++ +DRDP A++ + + + L F L+ ++ D G VDG++ DLGVSSM Sbjct: 89 ELLGIDRDPAALALAARRLAPFGARVRLVHGNFRGLEQHLEDAGWDAVDGILLDLGVSSM 148 Query: 117 QIDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHA 175 Q+D RGFS+Q+ GPLDMRM S +A+D+VN A L R + GEE+ A RIA Sbjct: 149 QLDDPSRGFSYQEEGPLDMRMDPSQPVTAADLVNTAGRDQLARWIAEYGEERWAGRIADF 208 Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYFSKNN-RIHPATRSFQALRIFVNNEIEELAQGLRS 234 IV R+ P TT L +I+ + HPA R+FQALRI VN E++ L + L+ Sbjct: 209 IVAARRRRPITTTTQLVEIIKAAIPARARRRGGHPARRTFQALRIAVNGELDGLEEFLQQ 268 Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVV 294 A + L+ GG ++V++FHSLEDR VK+ F + + + A F+ +T++ V Sbjct: 269 AARRLRPGGRMVVIAFHSLEDRAVKRAFRALAA----------PDGGAAPFRLLTRRPVT 318 Query: 295 PTQEDVAFNRRSRSAKLRAGMR 316 P +E+ N RSRSAKLRA R Sbjct: 319 PGEEEAQANPRSRSAKLRAIER 340 >gi|116329171|ref|YP_798891.1| S-adenosylmethionine-dependentmethyltransferase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|122283047|sp|Q04Y87|RSMH_LEPBL RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|116121915|gb|ABJ79958.1| S-adenosylmethionine-dependentmethyltransferase [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 316 Score = 296 bits (758), Expect = 4e-78, Method: Composition-based stats. Identities = 106/288 (36%), Positives = 159/288 (55%), Gaps = 23/288 (7%) Query: 39 VILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ 96 + LD T G GG+S F K N VI DRDP +S + D+KE+ Q FS++ Sbjct: 28 LFLDGTAGEGGHSLLFLKGFPNSKVILCDRDPVMLSRALARLVDFKERVVSIQTNFSEID 87 Query: 97 -DYVPDKGVD----GVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQ 150 + + G++ G++ DLG+S+ + RGFSF+++ PLDMR++ + GI+A DV+N Sbjct: 88 SNLLSSHGINDSPQGILLDLGISTFHLFHSGRGFSFKEAEPLDMRLTPNIGINAEDVINT 147 Query: 151 ANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHP 209 + L I GEE+ + +IA IV+RR+ T +L+ LI K + HP Sbjct: 148 YSKDRLMHIFYTYGEERWSKKIAEVIVERRKQNLISYTSELADLISKIIPRKLWPPGRHP 207 Query: 210 ATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKV 269 ATR FQALRI VN E+ + +GL S L+ G++ V+SFHSLEDR+VK + + + Sbjct: 208 ATRIFQALRIEVNQELTHIEKGLDSLLNLLRPEGVIQVISFHSLEDRIVKNSLRNYAKQ- 266 Query: 270 MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 F+ +TKK ++P++E+ N SRSAKLR +T Sbjct: 267 -------------NGFELLTKKPILPSEEETKENPASRSAKLRVLRKT 301 >gi|254432433|ref|ZP_05046136.1| S-adenosyl-methyltransferase MraW [Cyanobium sp. PCC 7001] gi|197626886|gb|EDY39445.1| S-adenosyl-methyltransferase MraW [Cyanobium sp. PCC 7001] Length = 317 Score = 295 bits (757), Expect = 4e-78, Method: Composition-based stats. Identities = 108/322 (33%), Positives = 164/322 (50%), Gaps = 35/322 (10%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPAP--------GKVILDATFGAGGYSRSFCKMGS-- 59 ++ + H PVL + V+A P G +++D T G GG+S + Sbjct: 14 ATTDAAPVFAHQPVLADAVLASFAPVETLLAEHSGGGLLIDCTLGGGGHSALLLEAHPGL 73 Query: 60 NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQID 119 +I LD+DP A + E + + ++ ++ F+ D+ P + V+ DLGVSS Q+D Sbjct: 74 RLIGLDQDPSARTAAAERLAPFGDRVTIVATNFA---DHRPSEPALAVLADLGVSSPQLD 130 Query: 120 CGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178 RGFSF+ GPLDMRM+ G +A+ ++++ L ++ GEE+ + RIA I + Sbjct: 131 VAGRGFSFRAEGPLDMRMNPEAGETAAALLDRLEEGALADLIYGYGEERLSRRIARRIKE 190 Query: 179 R---RQSAPFQTTQDLSSLIQKT-VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234 + A +TT +L+ L+ ++ R+HPATR+FQALRI VN+E+ L + L Sbjct: 191 QGPWNDPARPRTTAELAWLVGGCYPPAARRGRLHPATRTFQALRIAVNDELGVLGRWLEQ 250 Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVV 294 L+ GGLL V+SFHSLEDRLVK F + +T+K +V Sbjct: 251 VPDWLRPGGLLGVISFHSLEDRLVKTAF-----------------LRDERLERVTRKPLV 293 Query: 295 PTQEDVAFNRRSRSAKLRAGMR 316 E+ N RSRSAK R R Sbjct: 294 AAAEEAEANPRSRSAKFRVARR 315 >gi|258654059|ref|YP_003203215.1| S-adenosyl-methyltransferase MraW [Nakamurella multipartita DSM 44233] gi|258557284|gb|ACV80226.1| S-adenosyl-methyltransferase MraW [Nakamurella multipartita DSM 44233] Length = 348 Score = 295 bits (757), Expect = 4e-78, Method: Composition-based stats. Identities = 103/304 (33%), Positives = 167/304 (54%), Gaps = 19/304 (6%) Query: 20 HVPVLLEKVIALLNP---------APGKVILDATFGAGGYSRSFCKMGSNV--IALDRDP 68 H+PVL+++V LL P A V++DAT G GG++ + + + + +DRDP Sbjct: 27 HIPVLVDRVDQLLAPAIEAATADGATDVVLVDATLGMGGHTLALLQAHPRLRVVGIDRDP 86 Query: 69 FAVSCGQETM--RDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGD 122 A+S ++ + ++ L A + ++ + + V V+FDLGVSS+Q+D D Sbjct: 87 QALSIAEQRITAAGLADRVELVHAVYDRIGEVIAATVASGRVQAVLFDLGVSSVQLDEAD 146 Query: 123 RGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGF++ + PLDMRM SGI+A++V+N ++TRIL GEE+ A RIA A+V R Sbjct: 147 RGFAYAQDAPLDMRMDPTSGITAAEVINTYPGAEITRILREYGEERFAQRIARAVVTERA 206 Query: 182 SAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 PF T+ L L++ + ++ +PA R+FQALRI VN+E+ L + + SA + L Sbjct: 207 KRPFTTSARLVELVRANIPAAARRTGGNPAKRTFQALRIEVNDELGALQRAIPSALQHLS 266 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300 G ++V+S+ SLEDR+VK+ A + + H F+ + + PT E++ Sbjct: 267 VAGRIVVMSYQSLEDRIVKRAIAPLTLSRTPLDLPTELPGHDPEFRWVVRGSQAPTDEEI 326 Query: 301 AFNR 304 N Sbjct: 327 QANP 330 >gi|116330221|ref|YP_799939.1| S-adenosylmethionine-dependentmethyltransferase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|122282016|sp|Q04V89|RSMH_LEPBJ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|116123910|gb|ABJ75181.1| S-adenosylmethionine-dependentmethyltransferase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 316 Score = 295 bits (757), Expect = 5e-78, Method: Composition-based stats. Identities = 106/288 (36%), Positives = 159/288 (55%), Gaps = 23/288 (7%) Query: 39 VILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ 96 + LD T G GG+S F K N VI DRDP +S + D+KE+ Q FS++ Sbjct: 28 LFLDGTAGEGGHSLLFLKGFPNSKVILCDRDPVMLSRALARLVDFKERVVSIQTNFSEID 87 Query: 97 -DYVPDKGVD----GVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQ 150 + + G++ G++ DLG+S+ + RGFSF+++ PLDMR++ + GI+A DV+N Sbjct: 88 SNLLSSHGINDSPQGILLDLGISTFHLFHSGRGFSFKEAEPLDMRLTPNIGINAEDVINT 147 Query: 151 ANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHP 209 + L I GEE+ + +IA IV+RR+ T +L+ LI K + HP Sbjct: 148 YSKDRLMHIFYTYGEERWSKKIAEVIVERRKQNLISYTSELADLISKIIPRKLWPPGRHP 207 Query: 210 ATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKV 269 ATR FQALRI VN E+ + +GL S L+ G++ V+SFHSLEDR+VK + + + Sbjct: 208 ATRIFQALRIEVNQELTHIEKGLDSLLNLLRPEGVIQVISFHSLEDRIVKNSLRNYAKQ- 266 Query: 270 MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 F+ +TKK ++P++E+ N SRSAKLR +T Sbjct: 267 -------------NGFELLTKKPILPSEEETKENPASRSAKLRVLRKT 301 >gi|238922879|ref|YP_002936392.1| methyltransferase [Eubacterium rectale ATCC 33656] gi|263433286|sp|C4ZBW8|RSMH1_EUBR3 RecName: Full=Ribosomal RNA small subunit methyltransferase H 1; AltName: Full=16S rRNA m(4)C1402 methyltransferase 1; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH 1 gi|238874551|gb|ACR74258.1| methyltransferase [Eubacterium rectale ATCC 33656] Length = 349 Score = 295 bits (757), Expect = 5e-78, Method: Composition-based stats. Identities = 95/326 (29%), Positives = 167/326 (51%), Gaps = 28/326 (8%) Query: 5 SCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNV 61 + + + S + G H+ ++++++I L+ PG+ DAT G GG++R+ + ++ Sbjct: 36 TIEHVISKGNTPAGMHISIMVKEIIDFLDIKPGQTGFDATLGYGGHTRAMLEKLEGQGHM 95 Query: 62 IALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQ 117 A D DP ++ + + + ++ F + + + G D ++ DLGVSSMQ Sbjct: 96 FATDVDPIESEKTKKRLAEAGFGEDILTIKLQNFCTIDEIAKEVGGFDFILADLGVSSMQ 155 Query: 118 IDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 ID +RGFSF+ GPLD+R++ + GISA++ ++ + ++L+ +L +E +A AI Sbjct: 156 IDNPERGFSFKVDGPLDLRLNPNAGISAAERLDNISREELSGMLYENSDEPYCEELAKAI 215 Query: 177 VKR-RQSAPFQTTQDLSSLIQKTVYFSKNNRIH-----PATRSFQALRIFVNNEIEELAQ 230 R+ TT L +I++T+ F R+FQALRI VN+E E L + Sbjct: 216 TDEIRKGNRIGTTTKLRHIIEQTLDFLPEKDKKDIIKKTCQRTFQALRIDVNHEFEVLYE 275 Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK 290 + ALK GG +++FHS ED+LVKK + ++ +K Sbjct: 276 FMEKLPGALKPGGRAAILTFHSGEDKLVKKALK--------------AGYKAGIYSDYSK 321 Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMR 316 V+ P+ ++ A N R+RS K+R +R Sbjct: 322 DVIRPSAQECAQNGRARSTKMRWAVR 347 >gi|225568788|ref|ZP_03777813.1| hypothetical protein CLOHYLEM_04867 [Clostridium hylemonae DSM 15053] gi|225162287|gb|EEG74906.1| hypothetical protein CLOHYLEM_04867 [Clostridium hylemonae DSM 15053] Length = 351 Score = 295 bits (757), Expect = 5e-78, Method: Composition-based stats. Identities = 105/331 (31%), Positives = 165/331 (49%), Gaps = 31/331 (9%) Query: 3 SKSCKTMSSAIHH---TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG- 58 K KT+S I G H+ + +++++ L PG+ LDAT G GG++ + Sbjct: 32 EKYAKTVSRVIQKGSTPAGMHISICVKEILEFLQIRPGQRGLDATLGYGGHTSKMLECLK 91 Query: 59 --SNVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLG 112 ++ ALD DP + + + ++ F+++ + G D V+ DLG Sbjct: 92 GQGHIYALDVDPIESVRTAKRLEKLGYGPDILTVKLQNFAKIDQVSREAGLFDFVLADLG 151 Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASR 171 VSSMQID DRGF+++ GPLD+RM+ GISA++ + ++L +L +E + Sbjct: 152 VSSMQIDNPDRGFTYKAEGPLDLRMNPQKGISAAERLRDITKEELEGMLRENSDEPYGAE 211 Query: 172 IAHAI-VKRRQSAPFQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEI 225 IA A+ K R+ +TT L I++ + F K + R+FQALRI VN+E Sbjct: 212 IAEAVTEKIRKGGEIETTTQLYKTIEEALAFLPEKDRKEAVKKSSQRTFQALRIDVNSEF 271 Query: 226 EELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF 285 E L L L GG + +++FHS EDRLVKK F + V+ Sbjct: 272 EALYSFLEKLPDVLAPGGRVAILTFHSGEDRLVKKSFKQFAKSG--------------VY 317 Query: 286 QSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 I+K+V+ P+QE+ N R+RS K+R +R Sbjct: 318 SEISKEVIRPSQEECRQNGRARSTKMRWAVR 348 >gi|260438648|ref|ZP_05792464.1| S-adenosyl-methyltransferase MraW [Butyrivibrio crossotus DSM 2876] gi|292809242|gb|EFF68447.1| S-adenosyl-methyltransferase MraW [Butyrivibrio crossotus DSM 2876] Length = 346 Score = 295 bits (756), Expect = 6e-78, Method: Composition-based stats. Identities = 104/328 (31%), Positives = 165/328 (50%), Gaps = 29/328 (8%) Query: 3 SKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---S 59 + + + S G H+P+++E+++ +L PG V LDAT G GG+S + Sbjct: 34 GDTIEKVISKGSTPAGMHIPIMVEEILDVLKVQPGDVGLDATLGYGGHSGKILEKLKGSG 93 Query: 60 NVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSS 115 ++ +LD DP + ++ +RD + F++ + F + + G D ++ DLGVSS Sbjct: 94 HLYSLDIDPIEIVRTEKRLRDKGFSEDVFTVIRTNFKNIDEVSGTAGKFDFLMADLGVSS 153 Query: 116 MQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAH 174 MQID +RGFS++ GPLD+R+ S G AS+ + + + T +L +E A IA Sbjct: 154 MQIDNPERGFSYKNEGPLDLRLDPSKGEPASERLKKLTKDEFTGMLIENSDEPYAKEIAT 213 Query: 175 AIV-KRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPA-----TRSFQALRIFVNNEIEEL 228 + + R+ TT DL I+K + F A R+FQALRI VN+E E L Sbjct: 214 EVFNEFRKKKEINTTTDLYKAIEKALSFIPEKERKDAVKKSSQRTFQALRIDVNSEFEVL 273 Query: 229 AQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI 288 + L+ +K GG + +++FHS EDRLVK++F V I Sbjct: 274 EEFLQKLPDVMKEGGRIAILTFHSGEDRLVKQYFKMYKRDG--------------VLSEI 319 Query: 289 TKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 + V+ P+ + A N R+RS KLR +R Sbjct: 320 S-DVIRPSAAECARNGRARSTKLRWAVR 346 >gi|111221622|ref|YP_712416.1| S-adenosyl-methyltransferase MraW [Frankia alni ACN14a] gi|123143317|sp|Q0RNP9|RSMH_FRAAA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|111149154|emb|CAJ60837.1| S-adenosyl-dependent methyl transferase [Frankia alni ACN14a] Length = 325 Score = 295 bits (756), Expect = 6e-78, Method: Composition-based stats. Identities = 114/314 (36%), Positives = 176/314 (56%), Gaps = 11/314 (3%) Query: 19 DHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSC 73 H PVL ++V+ LL P PG V++DAT G GG++ + V+ LDRD A++ Sbjct: 1 MHTPVLTDRVLELLAPALSRPGAVVVDATVGLGGHAAALLAAFPEVRVVGLDRDLDALAH 60 Query: 74 GQETMRD-YKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK 129 E +R E+ L A + ++ + G V GV+FDLGVSS+Q+D RGF++ + Sbjct: 61 SGERLRALAPERVRLVHAVYDEIGTVLAGLGSARVQGVLFDLGVSSLQLDTDARGFAYSR 120 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM + G++A++V+N + L RIL GEE+ A RIA ++V+ R PF T+ Sbjct: 121 DAPLDMRMDATRGLTAAEVLNTYDAAALARILRDYGEERFARRIAESVVRARAVEPFTTS 180 Query: 189 QDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 L L++ + ++ +PA R+FQALRI VN+E++ LA+ L +A AL GG L+V Sbjct: 181 ARLVDLVRDAIPAPARRTGGNPAKRTFQALRIEVNSELDVLARALPAAFDALAVGGRLVV 240 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +S+HSLEDRLVK+ + ++ + + +T+ + + A N R+ Sbjct: 241 LSYHSLEDRLVKRELRGYAETLVPPDMPVVPAGAEPRLRWLTRGAEPAGEVEKADNPRAA 300 Query: 308 SAKLRAGMRTVERS 321 S +LRA RT Sbjct: 301 SVRLRAAERTAPNP 314 >gi|153813493|ref|ZP_01966161.1| hypothetical protein RUMOBE_03913 [Ruminococcus obeum ATCC 29174] gi|149830437|gb|EDM85529.1| hypothetical protein RUMOBE_03913 [Ruminococcus obeum ATCC 29174] Length = 352 Score = 295 bits (756), Expect = 7e-78, Method: Composition-based stats. Identities = 93/328 (28%), Positives = 161/328 (49%), Gaps = 28/328 (8%) Query: 5 SCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNV 61 + + + S + G H+ +++ +++ L PG+ DAT G GG++++ ++ Sbjct: 38 TIEHVISKGNTPAGMHISIMVNEILDFLKIQPGETGFDATLGYGGHTKAMMECLHGEGHM 97 Query: 62 IALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQ 117 A D DP + ++ + + + ++ F + + + G D ++ DLGVSSMQ Sbjct: 98 YATDVDPEESAKTRKRLAEQGFGEDILTVKLQNFCTIDEIAKEAGGFDFILADLGVSSMQ 157 Query: 118 IDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 ID RGFSF+ GPLD+R++ GISA++ +++ + +L +L +E IA AI Sbjct: 158 IDNPKRGFSFRADGPLDLRLNQEKGISAAERLDKISRDELAGMLYENSDEPYCEEIAKAI 217 Query: 177 VKR-RQSAPFQTTQDLSSLIQKTVYFSKNNRIH-----PATRSFQALRIFVNNEIEELAQ 230 R+ TT L +I++T+ F R FQALRI VN E E L + Sbjct: 218 TDEIRKGNRVDTTTKLREIIEETLDFLPEKEKKDTVRKTCQRVFQALRIDVNREFEVLYE 277 Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK 290 + ALK GG + +++FHS ED+LVKK + ++ K Sbjct: 278 FMEKLPDALKPGGRVAILTFHSGEDKLVKKALK--------------AGYKAGIYSDYAK 323 Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMRTV 318 V+ P+ ++ A N R+RS K+R +++ Sbjct: 324 DVIRPSAQECAQNGRARSTKMRWAVKSE 351 >gi|295109383|emb|CBL23336.1| S-adenosyl-methyltransferase MraW [Ruminococcus obeum A2-162] Length = 350 Score = 294 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 95/326 (29%), Positives = 162/326 (49%), Gaps = 28/326 (8%) Query: 5 SCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNV 61 + + + S + G H+ +++++++ L PG+ DAT G GG++++ + ++ Sbjct: 38 TIEHVISKGNTPAGMHISIMVKEILDFLKIQPGETGFDATLGYGGHTKAMMECLHGEGHM 97 Query: 62 IALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQ 117 A D DP + ++ + + + ++ F + + + G D ++ DLGVSSMQ Sbjct: 98 YATDVDPEESAKTRKRLAEQGFGEDILTVKLQNFCTIDEIAKEAGGFDFILADLGVSSMQ 157 Query: 118 IDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 ID RGFSF+ GPLD+R++ GISA++ ++ +L +L +E IA AI Sbjct: 158 IDNPKRGFSFRADGPLDLRLNQEKGISAAERLDTIGRDELAGMLYENSDEPYCEEIAKAI 217 Query: 177 VKR-RQSAPFQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQ 230 R+ TT L +I+KT+ F K+ R FQALRI VN E E L + Sbjct: 218 TDEIRRGNRVDTTTKLREIIEKTLSFIPEKERKDTVRKTCQRVFQALRIDVNREFEVLYE 277 Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK 290 + ALK GG + +++FHS ED+LVKK + ++ K Sbjct: 278 FMEKLPDALKPGGRVAILTFHSGEDKLVKKALK--------------AGYKAGIYSDYAK 323 Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMR 316 V+ P+ ++ A N R+RS K+R ++ Sbjct: 324 DVIRPSAQECAQNGRARSTKMRWAVK 349 >gi|88809878|ref|ZP_01125384.1| methyltransferase [Synechococcus sp. WH 7805] gi|88786262|gb|EAR17423.1| methyltransferase [Synechococcus sp. WH 7805] Length = 312 Score = 294 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 105/313 (33%), Positives = 157/313 (50%), Gaps = 31/313 (9%) Query: 15 HTIGDHVPVLLEKVIALLNPAPG-----KVILDATFGAGGYSRSFCKMGS--NVIALDRD 67 + HVPVL + ++ L+ P +++DAT G GG+S +I LD+D Sbjct: 9 DSAFQHVPVLADVLLKTLDQEPSDHWQSGLVVDATLGGGGHSSLLLDRYPGLRLIGLDQD 68 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 A + +R ++E+ ++ F+ DY P V+ DLGVSS Q+D RGFSF Sbjct: 69 ATARAAAAARLRPWQERVTIVATNFA---DYSPPGSASLVLADLGVSSPQLDVAQRGFSF 125 Query: 128 QKSGPLDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ-SAP 184 + GPLDMRM+ G +A+ ++ + DL ++ GEE+ + RIA I Sbjct: 126 RLDGPLDMRMNPEGGGETAAQLIERLKESDLADLIYAYGEERLSRRIARRIKADLAVQGT 185 Query: 185 FQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 + T L+ I + RIHPATR+FQALRI VN+E+ L + L + L+ GG Sbjct: 186 YSGTAALAYAIAGCYPPKARRGRIHPATRTFQALRIAVNHELAALDRLLEQSPDWLQPGG 245 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 +L ++SFHSLEDR VK F + IT++ + ++++ N Sbjct: 246 MLAIISFHSLEDRRVKTAFLQDE-----------------RLERITRRPLTASEDEQERN 288 Query: 304 RRSRSAKLRAGMR 316 RSRSAKLR R Sbjct: 289 ARSRSAKLRIARR 301 >gi|84999750|ref|XP_954596.1| s-adenosyl-methyltransferase [Theileria annulata] gi|65305594|emb|CAI73919.1| s-adenosyl-methyltransferase, putative [Theileria annulata] Length = 389 Score = 294 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 105/326 (32%), Positives = 170/326 (52%), Gaps = 37/326 (11%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 +H+PVLL++ + L P + LD T G GG++ + +I++DRDP +V + Sbjct: 72 EHIPVLLKESMEYLITDPKGLYLDVTLGYGGHTEEILRRINPNGRLISIDRDPESVYFNR 131 Query: 76 ETMRDY--KEQFSLFQATFSQLQDYV-----PDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 ++ Y + S+ FS + D + P++G G++ DLG+S+ Q++ RGFS+ Sbjct: 132 NRLKTYIDDSRLSVELGKFSGIIDLLKSLKLPNEGYTGIIADLGLSTHQLENSIRGFSYM 191 Query: 129 KSGPLDMRMSC----------------SGISASDVVNQANVKDLTRILGILGEEKQASRI 172 K+GPLDMRMS S +A +VN+++ L +I G+E +A+ I Sbjct: 192 KNGPLDMRMSSPLNDPFNPNFKIDVKSSENTAYQLVNKSDESTLRKIFKEFGQEPRAASI 251 Query: 173 AHAIV-KRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQG 231 A IV KRR TT L S++ ++ +++ +R FQALRI VN+E+ EL+ Sbjct: 252 AKKIVEKRRILGEIDTTDKLKSVVMDSLPMFHRSKMRTLSRIFQALRIKVNDELNELSSF 311 Query: 232 LRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKK 291 L LK G + +++H+LEDRLVK F + + F +TKK Sbjct: 312 LNMIPHLLKYNGRFVCITYHALEDRLVKNSFINLRNLKTST----------VKFNILTKK 361 Query: 292 VVVPTQEDVAFNRRSRSAKLRAGMRT 317 ++PT+E+V N +SR+AKLR + Sbjct: 362 CILPTREEVESNIKSRTAKLRCIEKV 387 >gi|302387032|ref|YP_003822854.1| S-adenosyl-methyltransferase MraW [Clostridium saccharolyticum WM1] gi|302197660|gb|ADL05231.1| S-adenosyl-methyltransferase MraW [Clostridium saccharolyticum WM1] Length = 349 Score = 294 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 104/317 (32%), Positives = 158/317 (49%), Gaps = 28/317 (8%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70 + G H + +++++ L PG+ LDAT G GG++ K ++ A D D Sbjct: 46 NTPAGMHRSICVKEILDFLQITPGQTGLDATLGYGGHTLEMLKCLNSKGHLYATDVDSIE 105 Query: 71 VSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFS 126 + +E + E ++ Q FS + + G ++ ++ DLGVSSMQID +RGFS Sbjct: 106 LPRTRERLEHLGYGSEILTIRQTNFSNIDQITSESGPLNFILADLGVSSMQIDNPERGFS 165 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP- 184 F+ GPLD+R++ S GISA+D + + ++L +L +E A+ IA AIV + Sbjct: 166 FKTEGPLDLRLNPSKGISAADRLKTISQEELHGMLLENADEPHAAEIAGAIVTAIKKGTD 225 Query: 185 FQTTQDLSSLIQKTVYFSKNNR-----IHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 TT L +IQ + F RSFQALRI VNNE E L + L AL Sbjct: 226 ITTTSQLQQIIQDALKFIPEKERNNEIKKSCQRSFQALRIDVNNEFEVLYEFLEKLPAAL 285 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 GG + +++FHS EDRLVKK F V++ IT + + P+ + Sbjct: 286 AEGGRVAILTFHSGEDRLVKKSFQRF--------------YREGVYKEITPEAIRPSAAE 331 Query: 300 VAFNRRSRSAKLRAGMR 316 + N R+R AKLR ++ Sbjct: 332 CSSNSRARCAKLRWAIK 348 >gi|240047424|ref|YP_002960812.1| S-adenosyl-L-methionine-dependent methyltransf [Mycoplasma conjunctivae HRC/581] gi|263458177|sp|C5J697|RSMH_MYCCR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|239984996|emb|CAT04989.1| S-adenosyl-L-methionine-dependent methyltransf [Mycoplasma conjunctivae] Length = 296 Score = 294 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 96/305 (31%), Positives = 149/305 (48%), Gaps = 16/305 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76 H+PVL++ +I LN + +D T G GG++ + + +I D+D A+ +E Sbjct: 1 MHIPVLIDSLIENLNIREDGIYVDLTLGRGGHAAAILSKLTTGLLIVFDKDEKAIEESKE 60 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + + F + VDG + DLGVSS QID G+RGFS+ K+ L Sbjct: 61 RLLAISKNVIFIWEDFRNFAVELEKRQIYKVDGFIMDLGVSSPQIDQGERGFSYTKNARL 120 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ + + A VVN N LT++L GE K A + AI+ R P TT +L Sbjct: 121 DMRMNQNQELDAHHVVNNYNQDLLTKVLQNYGELKNARSLTKAIIDSR---PINTTFELV 177 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +LI+ + + + + FQA+RI VN+E+ L L LK + +++FHS Sbjct: 178 NLIRSSSPAALLRKKNIVKNVFQAIRIEVNDELGALEAFLSLFISYLKQDSQVAIITFHS 237 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VK F S ++ Q + K + P+ ++ N+RS+SAKLR Sbjct: 238 LEDRIVKMKFKSLLISS-------KTHLFDPRAQQFSVKTIKPSTSEIQLNKRSKSAKLR 290 Query: 313 AGMRT 317 + Sbjct: 291 ILSKN 295 >gi|111115132|ref|YP_709750.1| hypothetical protein BAPKO_0317 [Borrelia afzelii PKo] gi|216263935|ref|ZP_03435929.1| S-adenosyl-methyltransferase MraW [Borrelia afzelii ACA-1] gi|123145742|sp|Q0SNK4|RSMH_BORAP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|110890406|gb|ABH01574.1| conserved hypothetical protein [Borrelia afzelii PKo] gi|215979979|gb|EEC20801.1| S-adenosyl-methyltransferase MraW [Borrelia afzelii ACA-1] Length = 296 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 98/306 (32%), Positives = 168/306 (54%), Gaps = 24/306 (7%) Query: 20 HVPVLLEKV---IALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 H PVLL+ + I L + +D+T G G ++++ + +++ ++RD + Sbjct: 7 HFPVLLDAICKLIEDLPVKSDLIYIDSTLGEGAHAKAILEKYDFLSLVGIERDSQILERA 66 Query: 75 QETMRDYKEQFSLFQATFSQL-QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ + +K++ + F F +Y + + ++ DLG+S +GFSF + PL Sbjct: 67 KQFLLIFKDRITYFNDWFDNFFANYPLNVKANFILVDLGISMFHYKDSKKGFSFLEDEPL 126 Query: 134 DMRMSCSGISAS--DVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 DMR+ S S S ++VN + DL ++ L E + RI+ AIV+ R+ QTT++L Sbjct: 127 DMRLCSSSCSISAAEIVNTFSKYDLESLIYNLSNEHYSRRISKAIVEYRKIKKIQTTKEL 186 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 S+I K FSK +I+PAT++FQALRI+VN+E+ L + L + L G+L +++FH Sbjct: 187 QSIINKVYPFSKV-KINPATKTFQALRIYVNDELARLKRSLPLWVENLAKDGILAIITFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 S+EDR+VK FF S S ++ I+KK ++P+ +++ N+ SRSAKL Sbjct: 246 SIEDRIVKDFFRSLSCD---------------LYVKISKKPIIPSSDEIKKNKPSRSAKL 290 Query: 312 RAGMRT 317 RA + Sbjct: 291 RAVKKI 296 >gi|293977957|ref|YP_003543387.1| S-adenosyl-methyltransferase MraW [Candidatus Sulcia muelleri DMIN] gi|292667888|gb|ADE35523.1| S-adenosyl-methyltransferase MraW [Candidatus Sulcia muelleri DMIN] Length = 300 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 93/304 (30%), Positives = 158/304 (51%), Gaps = 17/304 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H+PVLL+++++ L + +D TFG GG+S S VIA D+D ++ Sbjct: 5 HIPVLLDEILSFLVKEKNGIYIDTTFGGGGHSLSLLNKLSNKGRVIAFDKDIDSIKNNN- 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +F+L + + ++ + V G++ DLG+SS QI+ RGFS + + L Sbjct: 64 ---ILDARFNLIKTNYRFIKKKIKLFNLNKVSGILADLGISSHQINSPKRGFSIRYNSIL 120 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + I+A ++N + +L +L GE K A I+ I+K R+ ++T DL Sbjct: 121 DMRMDTYNKINAQHIINNYSYNELYNLLIRFGEVKNAKNISKLILKHRKKKYIKSTFDLI 180 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++ F + ++ FQ+LRI VN+EI L L+++ LK GG + V+S+HS Sbjct: 181 KILN----FFYKKKNKYLSKIFQSLRIEVNDEINALKDLLKNSLSILKPGGRIAVISYHS 236 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 +EDR+VKKF + + + +N P + + +++ ++E+ N RSRSA LR Sbjct: 237 IEDRIVKKFLKTGNFNGIIPYDEYGNNLSPLI--LLEPRIIFSSKEEKKENNRSRSAILR 294 Query: 313 AGMR 316 + Sbjct: 295 IAEK 298 >gi|325989697|ref|YP_004249396.1| S-adenosyl-L-methionine-dependent methyltransferas [Mycoplasma suis KI3806] gi|323574782|emb|CBZ40442.1| S-adenosyl-L-methionine-dependent methyltransferas [Mycoplasma suis] Length = 304 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 85/308 (27%), Positives = 151/308 (49%), Gaps = 11/308 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H+PV+L +V + + +D TFG GG+S+ + +I +D DP + Sbjct: 1 MHIPVMLREVCENWLSSANGIYIDCTFGCGGHSKELLRSLGENSRLIGMDVDPKVIPYAN 60 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG- 131 E + +FS ++ +++Y + DG++FDLG+S++Q+ +R FS+ S Sbjct: 61 E-LSSQDSRFSFLNVNYTSMRNYWKTNSLPPADGILFDLGLSTLQLKDEERTFSYNSSSS 119 Query: 132 PLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 L++R G S +++N K L I G +A R+ I++ R++ P + L Sbjct: 120 TLELRFGLEGKSVYEILNNYPPKKLNWIFKKYGNISEAERLTQTIIQFRKNTPITEVKQL 179 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+++ +K +P FQ+LRI NNE+ + LR A + LK G L++++FH Sbjct: 180 KEIIERSKILNKRKNKNPMKLIFQSLRIECNNELNCFKEALRQAAELLKVNGKLLIITFH 239 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLED +V ++ S + P F + ++P++ ++ N SRSAKL Sbjct: 240 SLEDEIVLEWKRQNSSYIKIPE---MGEIIPPRFTLKSNSPLLPSRAEIETNWASRSAKL 296 Query: 312 RAGMRTVE 319 +T E Sbjct: 297 WVFTKTRE 304 >gi|253577924|ref|ZP_04855196.1| MraW methylase MraW [Ruminococcus sp. 5_1_39B_FAA] gi|251850242|gb|EES78200.1| MraW methylase MraW [Ruminococcus sp. 5_1_39BFAA] Length = 351 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 93/326 (28%), Positives = 164/326 (50%), Gaps = 28/326 (8%) Query: 5 SCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNV 61 + + + + G H+ +++++++ LN PG+ DAT G GG++++ + ++ Sbjct: 38 TIEHVIQKGNTPAGMHISIMVKEILDFLNIQPGETGFDATLGYGGHTKAMLQCLNGKGHI 97 Query: 62 IALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQ 117 A D DP + ++ + + E ++ F + + + G D ++ DLGVSSMQ Sbjct: 98 YATDVDPEESAKTKKRLAEQGFGEELLTVKLQNFCTIDEIAKEVGGFDFILADLGVSSMQ 157 Query: 118 IDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 ID RGFSF+ GPLD+R++ +GISA+ ++ + ++L +L +E +A AI Sbjct: 158 IDNPKRGFSFKTDGPLDLRLNQETGISAAQRLDTISREELAGMLCENSDEPYCEELAKAI 217 Query: 177 VKR-RQSAPFQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQ 230 R+ TT L +I+KT+ F K R+FQALRI VN+E E L + Sbjct: 218 TDEIRRGNHIDTTTKLRQVIEKTLDFLPEKEKKETIKKTCQRTFQALRIDVNHEFEVLYE 277 Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK 290 + AL+ GG + +++FHS ED+LVKK + + + K Sbjct: 278 FMEKLPDALRPGGRVAILTFHSGEDKLVKKALKAGYKDGIYSDYA--------------K 323 Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMR 316 V+ P+ ++ N R+RS K+R ++ Sbjct: 324 DVIRPSAKECTQNPRARSTKMRWAIK 349 >gi|47459215|ref|YP_016077.1| S-adenosylmethionine-dependent methyltransferase [Mycoplasma mobile 163K] gi|51316218|sp|Q6KHR2|RSMH_MYCMO RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|47458544|gb|AAT27866.1| S-adenosylmethionine-dependent methyltransferase [Mycoplasma mobile 163K] Length = 302 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 94/305 (30%), Positives = 160/305 (52%), Gaps = 15/305 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H+P+LL +V++ N V++D T G G+S+ K +I +D+D A++ +E Sbjct: 6 HIPILLNEVLSAFNLKETDVVIDLTLGRAGHSQEMLKKIPKGLLIGIDKDKSAITFSKEK 65 Query: 78 MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + F LF + FS++ D + + V+ ++ DLG+SS QID +RGFS+ K LD Sbjct: 66 LEQIGSNFKLFHSDFSKISDLLKELKISKVNAILIDLGISSPQIDNANRGFSYNKESRLD 125 Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM+ + A +VN + + L +L E K + +IA I R P +TT LS Sbjct: 126 MRMNLDQKLDAHFIVNSYSEEQLKNLLYRNAEIKNSRQIAKIITSNR---PIETTLQLSV 182 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 +++K + + P+ FQALR+ VN+EI L L++ L+ G + +++F+S+ Sbjct: 183 ILKKYLPAFIVRKKDPSKAVFQALRVEVNDEINSLNFLLKNLVSILEENGKVAIITFNSI 242 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 EDR+VKK+F S + F+ K +P+++++ N RS+SAK+R Sbjct: 243 EDRIVKKYFGSFIKDDV---LAFLPTKKEKEFEV---KTYLPSKKELEENPRSKSAKMRV 296 Query: 314 GMRTV 318 + Sbjct: 297 LKKIE 301 >gi|330902009|gb|EGH33332.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv. japonica str. M301072PT] Length = 263 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 99/263 (37%), Positives = 155/263 (58%), Gaps = 9/263 (3%) Query: 61 VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSM 116 ++ D+DP A++ GQ + +F + Q +F++L ++G V G++ DLGVSS Sbjct: 1 LLGFDKDPQAIATGQA-LAAEDGRFVIVQRSFAELGSETQERGLAGKVSGILLDLGVSSP 59 Query: 117 QIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175 Q+D +RGFSF GPLDMRM + G+SA++ + A +++ R+ GEE+ A R+A+A Sbjct: 60 QLDDPERGFSFMNDGPLDMRMDPTCGVSAAEFIATAPAEEIARVFKEYGEERFAKRMANA 119 Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 +V RR+ PF+ T DL+ +++ + + +PATR+FQ LRI VNNE+ +L GL +A Sbjct: 120 VVARREVQPFERTADLAEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAA 178 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQS-ITKKVV 293 AL+ GG L+V+SFHSLEDR+VK F + G+ + +P P + I K Sbjct: 179 LDALEVGGRLVVISFHSLEDRIVKLFMRKLAKGEADNMPRNLPIQYKPFEPKIKIHGKAQ 238 Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316 + + N RSRSA +R + Sbjct: 239 FASDVETKANPRSRSAVMRVAEK 261 >gi|124024959|ref|YP_001014075.1| S-adenosylmethionine-dependent methyltransferase [Prochlorococcus marinus str. NATL1A] gi|262824926|sp|A2C000|RSMH_PROM1 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|123960027|gb|ABM74810.1| Predicted S-adenosylmethionine-dependent methyltransferase [Prochlorococcus marinus str. NATL1A] Length = 304 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 107/310 (34%), Positives = 165/310 (53%), Gaps = 30/310 (9%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPG-----KVILDATFGAGGYSRSFCKMGS--NVIALDR 66 + +HVPV+ +++I L P +I+DAT G GG+S + +I LD+ Sbjct: 8 SSSNFNHVPVMGKEIIQSLKELPSELTKQGLIIDATIGGGGHSAQILENFPGIKIIGLDQ 67 Query: 67 DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126 DP A + + + + + F+ + ++ + V+ DLGVSS Q+D RGFS Sbjct: 68 DPMAREAASKKLIKFGTRIKIISTNFADFS--LDEQAI-CVLADLGVSSHQLDEPSRGFS 124 Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAP 184 F+ +GP+DMRM+ G SA++++ + ++L ++ LGEEK++ RIA I ++ P Sbjct: 125 FRLNGPIDMRMNPKEGSSAAELIETLSEQNLADLIYELGEEKRSRRIARKIKNDLAENGP 184 Query: 185 FQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 + TQDLS I + RIHP+TR+FQALRI VNNE+ L L A L G Sbjct: 185 YSGTQDLSYAIAGCFPPKQRYGRIHPSTRTFQALRIAVNNELGSLESLLLKAPNWLLENG 244 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 L +V+SFHSLEDR VK F + + + ++KK + + E++ N Sbjct: 245 LFMVMSFHSLEDRRVKSSFKTDN-----------------RLKVLSKKPIRASPEEIELN 287 Query: 304 RRSRSAKLRA 313 RS+SAKLR Sbjct: 288 PRSKSAKLRI 297 >gi|78185678|ref|YP_378112.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. CC9902] gi|123581009|sp|Q3AW00|RSMH_SYNS9 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|78169972|gb|ABB27069.1| methyltransferase [Synechococcus sp. CC9902] Length = 294 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 109/306 (35%), Positives = 158/306 (51%), Gaps = 28/306 (9%) Query: 20 HVPVLLEKVIALLN--PAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQ 75 HVPVL + V+A P V++DAT G GG+S + +I LD+DP A + Sbjct: 6 HVPVLADAVVAGAEHLPHHNGVLIDATLGGGGHSALLLERFPGLRLIGLDQDPTARAAAA 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 E + + ++ + F+ Y P V V+ DLGVSS Q+D +RGFSF+ GPLDM Sbjct: 66 ERLAAFADRVEILATNFA---SYTPPAPVLMVLADLGVSSPQLDVAERGFSFRLDGPLDM 122 Query: 136 RMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTTQDLS 192 RM+ G +A++++++ L ++ GEE+ + RIA I P++ T L+ Sbjct: 123 RMNPGSDGETAAELIDRLEENALADLIYGYGEERLSRRIARRIKADLAAQGPYEGTAALA 182 Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + + RIHPATR+FQALRI VN+E+ L + L+ A L+ GG++ V+SFH Sbjct: 183 YAVAGCYPPKARRGRIHPATRTFQALRIAVNDELAVLDRLLQQAPDWLETGGVMGVISFH 242 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR VK F + IT+K V T ++ N RSRSAK Sbjct: 243 SLEDRRVKTAFLQDE-----------------RLERITRKPTVATDDEQNRNPRSRSAKW 285 Query: 312 RAGMRT 317 R R Sbjct: 286 RLARRV 291 >gi|167745358|ref|ZP_02417485.1| hypothetical protein ANACAC_00049 [Anaerostipes caccae DSM 14662] gi|167655079|gb|EDR99208.1| hypothetical protein ANACAC_00049 [Anaerostipes caccae DSM 14662] Length = 367 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 100/315 (31%), Positives = 158/315 (50%), Gaps = 28/315 (8%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 G H+ + +++++ L PG+ LDAT G GG+++ K ++ ALD D + Sbjct: 66 PAGMHISICVKEILEFLQIKPGQTGLDATLGYGGHTQEMLKCLDSKGHLYALDVDAIELE 125 Query: 73 CGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQ 128 ++ + E ++ Q F+ + + G D V+ DLGVSSMQID DRGFS++ Sbjct: 126 KTRKRLEKLGYGPEILTIRQMNFADIDKIAEEAGPFDFVLADLGVSSMQIDNPDRGFSYK 185 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV-KRRQSAPFQ 186 GPLD+R++ G+SA++ + ++L +L +E A IA A+V K ++ Sbjct: 186 TEGPLDLRLNPEKGVSAAERLRTITRQELQGMLMENSDEPHADVIARAVVSKIKKGTAID 245 Query: 187 TTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 TT L +I++ + F K R+FQALRI VN+E E L + L L Sbjct: 246 TTTKLREVIEEALEFLPEHEKKEAVKKTCQRTFQALRIDVNSEFEVLYEFLEKLPNVLAK 305 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 GG +++FHS EDRLVKK F V+Q I+ V+ P+ E+ Sbjct: 306 GGRAAILTFHSGEDRLVKKSFKRL--------------LREGVYQEISTDVIRPSAEECR 351 Query: 302 FNRRSRSAKLRAGMR 316 N R+RS K+R ++ Sbjct: 352 MNSRARSTKMRWAIK 366 >gi|94502345|ref|ZP_01308815.1| S-adenosyl-methyltransferase MraW [Candidatus Sulcia muelleri str. Hc (Homalodisca coagulata)] gi|161833845|ref|YP_001598041.1| S-adenosyl-methyltransferase MraW [Candidatus Sulcia muelleri GWSS] gi|259495905|sp|A8Z694|RSMH_SULMW RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|94451100|gb|EAT14055.1| S-adenosyl-methyltransferase MraW [Candidatus Sulcia muelleri str. Hc (Homalodisca coagulata)] gi|152206335|gb|ABS30645.1| S-adenosyl-methyltransferase MraW [Candidatus Sulcia muelleri GWSS] Length = 300 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 93/304 (30%), Positives = 158/304 (51%), Gaps = 17/304 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H+PVLL+++++ L + +D TFG GG+S S VIA D+D ++ Sbjct: 5 HIPVLLDEILSFLVKEKNGIYIDTTFGGGGHSLSLLNKLSNKGRVIAFDKDIDSIKNNN- 63 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +F+L + + ++ + V G++ DLG+SS QI+ RGFS + + L Sbjct: 64 ---ILDARFNLIKTNYRFIKKKIKLFNLNKVSGILADLGISSHQINSPKRGFSIRYNSIL 120 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + I+A ++N + +L +L GE K A I+ I+K R+ ++T DL Sbjct: 121 DMRMDTYNKINAQHIINNYSYNELYNLLIRFGEVKNAKNISKLILKHRKKKYIKSTFDLI 180 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++ F + ++ FQ+LRI VN+EI L L+++ LK GG + V+S+HS Sbjct: 181 KILN----FFYKKKNKFLSKIFQSLRIEVNDEINALKDLLKNSLSILKPGGRIAVISYHS 236 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 +EDR+VKKF + + + +N P + + +++ ++E+ N RSRSA LR Sbjct: 237 IEDRIVKKFLKTGNFNGIIPYDEYGNNLSPLI--LLEPRIIFSSKEEKKENNRSRSAILR 294 Query: 313 AGMR 316 + Sbjct: 295 IAEK 298 >gi|224029029|gb|ACN33590.1| unknown [Zea mays] Length = 436 Score = 293 bits (751), Expect = 3e-77, Method: Composition-based stats. Identities = 119/350 (34%), Positives = 162/350 (46%), Gaps = 51/350 (14%) Query: 19 DHVPVLLEKVIALLN-PAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDP------ 68 H+PVLL +V+A P P + +D T GA G+S + + + I +D DP Sbjct: 87 HHIPVLLGEVLAAFRRPRPLRSFVDCTLGAAGHSLAMMEAHPELELYIGMDVDPSALGIG 146 Query: 69 ----FAVSCGQETMRDYKE---------------QFSLFQATFSQLQD--YVPDKGVDGV 107 A G+E + E F + S + + V GVDG+ Sbjct: 147 HGHIEAFLAGREREANGGEDDALLGTLRAYTHVKNFKYIKQVLSSVDESLVVGSSGVDGI 206 Query: 108 VFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEE 166 + DLG+SSMQ++ +RGFS + GPLDMRM + A D++N +L RIL GEE Sbjct: 207 LIDLGMSSMQVNKSNRGFSVLQDGPLDMRMDPKATLRAEDILNSWPELELGRILREYGEE 266 Query: 167 KQASRIAHAIVKRRQSAPFQTTQDLSSLIQK--TVYFSKNNRIHPATRSFQALRIFVNNE 224 + IVK R +T DL LIQ+ T+ + I +TR FQALRI VN+E Sbjct: 267 SNWQSVQKQIVKARSVGGLHSTGDLVKLIQRMCTISSGRQGWIKTSTRVFQALRIAVNDE 326 Query: 225 IEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH---------M 275 + L L S L GG L V+SFHSLEDR+VKK F A Sbjct: 327 LRVLEDSLHSCFDCLATGGRLAVISFHSLEDRIVKKTFLELIHGGEANEEDDKDDQALTD 386 Query: 276 IPSNAHPAVFQ--------SITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 I P Q +TK+ + P+QE+ N+R RSAKLR +T Sbjct: 387 IEDGDEPWSGQRVQGRNGTVLTKRPITPSQEEEKLNQRCRSAKLRVIQKT 436 >gi|297170224|gb|ADI21262.1| predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [uncultured myxobacterium HF0010_08B07] Length = 285 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 98/284 (34%), Positives = 152/284 (53%), Gaps = 12/284 (4%) Query: 37 GKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFS 93 + LD TFG GG+++ +I+ D D A+ + + F + FS Sbjct: 9 NGLYLDCTFGRGGHTKKILDKLSSEGQLISFDLDDDAMKVAKNI---DNKNFKFIKTNFS 65 Query: 94 QLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQAN 152 + DYV D + GV+ D GVSS Q+D +RGFSFQ GPLDMR + ++ D++ + Sbjct: 66 MIDDYVEDDSLSGVLIDCGVSSPQLDEPERGFSFQTKGPLDMRFNQEQKLTCKDIIENYS 125 Query: 153 VKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATR 212 K++ IL GEEK++ RIA IVK+R+ T L+ +I+ + HPAT+ Sbjct: 126 EKEIATILWKFGEEKESRRIAKLIVKQREQNVIDNTLVLAEIIKTAKTV--KTKKHPATK 183 Query: 213 SFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAV 272 SFQALR+ VN+E E L L + L G L++++FHSLEDR+ K+ F + Sbjct: 184 SFQALRMAVNSEFENLTTCLDRIKDKLTKSGKLVIITFHSLEDRIAKQTFKPKINFHEKN 243 Query: 273 RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 +I + F+ K++ P+QE+++ N R+RSAK+R + Sbjct: 244 LPLIYEDVSDK-FKI--SKIIYPSQEEISMNPRARSAKMRIIEK 284 >gi|162447772|ref|YP_001620904.1| S-adenosylmethionine-dependent methyltransferase [Acholeplasma laidlawii PG-8A] gi|263433290|sp|A9NGP8|RSMH2_ACHLI RecName: Full=Ribosomal RNA small subunit methyltransferase H 2; AltName: Full=16S rRNA m(4)C1402 methyltransferase 2; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH 2 gi|161985879|gb|ABX81528.1| S-adenosylmethionine-dependent methyltransferase [Acholeplasma laidlawii PG-8A] Length = 344 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 98/327 (29%), Positives = 164/327 (50%), Gaps = 29/327 (8%) Query: 3 SKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---S 59 ++ + + + G H +++++++ + G+V +D T G GG+S+ K Sbjct: 33 KETIQKVMKKGNTPAGMHRSIMVDEILHFFDIKLGQVGIDLTTGFGGHSKEILKKLNHTG 92 Query: 60 NVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSM 116 ++ +D+DP + + + Y + F+L Q F D + +G D ++ DLGVSSM Sbjct: 93 HLHGIDQDPIELPKTRARLESYGFNKDNFTLHQLNFKDF-DAIDTEGFDFILADLGVSSM 151 Query: 117 QIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175 QID DRGF+F++ GPLD+RM+ + GI A + + + ++ +L +E A IA Sbjct: 152 QIDNPDRGFTFREEGPLDLRMNPNVGIPAYVRLLEMSEIEIEHMLIENADEIYAKEIAKE 211 Query: 176 IVKRRQSAP-FQTTQDLSSLIQKTV-----YFSKNNRIHPATRSFQALRIFVNNEIEELA 229 I K + +TT DL +I + + ++R+FQALRI VN+E E L Sbjct: 212 ITKAKIQGRYIRTTLDLHQVIASALQKVSKKVYEEELKKASSRTFQALRIDVNSEYEVLF 271 Query: 230 QGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT 289 + L L GG + ++SFHS EDRLVKK F + T Sbjct: 272 EMLDKLPGKLNPGGKVAILSFHSGEDRLVKKAFKQYLNDGVFSM---------------T 316 Query: 290 KKVVVPTQEDVAFNRRSRSAKLRAGMR 316 + ++P++E+V N R+RSAKLR ++ Sbjct: 317 EGPILPSKEEVFNNPRARSAKLRIAIK 343 >gi|12045077|ref|NP_072888.1| S-adenosyl-methyltransferase MraW [Mycoplasma genitalium G37] gi|255660224|ref|ZP_05405633.1| S-adenosyl-methyltransferase MraW [Mycoplasma genitalium G37] gi|1351515|sp|P47464|RSMH_MYCGE RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|3844825|gb|AAC71443.1| S-adenosyl-methyltransferase MraW [Mycoplasma genitalium G37] gi|166078718|gb|ABY79336.1| S-adenosyl-methyltransferase MraW [synthetic Mycoplasma genitalium JCVI-1.0] Length = 309 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 92/306 (30%), Positives = 151/306 (49%), Gaps = 12/306 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77 H VL+ +VI LN P LD T G G+S+ + + D D +++ + Sbjct: 8 HQSVLINEVIHNLNINPCGNYLDLTAGFAGHSQKILEKLTTGTLTINDVDKESINF-CQK 66 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + + F+ ++ + DG++ DLGVSS Q++ +RGFSF+ GP+D Sbjct: 67 LFFKNNNVVIIHDNFANFPVHLKQLSITKFDGILMDLGVSSHQLNQPNRGFSFKNDGPID 126 Query: 135 MRMSCSGI--SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 MRM S +A V+ + L+ IL G+ K IA + K Q+ TT L+ Sbjct: 127 MRMDQSNQKNTALTVLKNLTEQKLSLILKKYGDIKHPKPIAIGLKKAVQTEKNLTTTQLA 186 Query: 193 SLIQK-TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++++ F K + + FQA+RI++N+EI L L LK +V+ FH Sbjct: 187 KVVKECATGFEKYQSRNYLAKVFQAIRIYLNDEITNLKTALTFIPNLLKNNSRFLVIVFH 246 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 S+E+++V+ F A + + +P PA +Q ITKK ++P+Q+++ N RSRSAKL Sbjct: 247 SIEEKIVRNFIAKLTSFIQP--EALPIKLTPA-YQLITKKPILPSQKELELNPRSRSAKL 303 Query: 312 RAGMRT 317 + Sbjct: 304 FVIQKN 309 >gi|153855593|ref|ZP_01996709.1| hypothetical protein DORLON_02727 [Dorea longicatena DSM 13814] gi|149752014|gb|EDM61945.1| hypothetical protein DORLON_02727 [Dorea longicatena DSM 13814] Length = 354 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 106/334 (31%), Positives = 164/334 (49%), Gaps = 31/334 (9%) Query: 3 SKSCKTMSSAIHH---TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG- 58 K T+S I G H+ + + +++ + PG+ LDAT G GG++ + Sbjct: 35 EKYADTISKVIKKGGTPAGMHISICVNEILDFFDIQPGQQGLDATLGYGGHTSKMLEKLQ 94 Query: 59 --SNVIALDRDPFAVSCGQETMRD--YKEQFSLFQ-ATFSQLQDYVPDKG-VDGVVFDLG 112 ++ LD DP + ++ + + + + F+ + + G D V+ DLG Sbjct: 95 GEGHIYGLDVDPIESAKTKKRLEEKGFGPNILTVKLENFANIDKVAEEAGKFDFVLADLG 154 Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASR 171 VSSMQID DRGF+F+ GPLD+RM+ GISA++ + + ++LT +L +E A Sbjct: 155 VSSMQIDNPDRGFTFKAEGPLDLRMNPEKGISAAERLRDISKEELTGMLIENSDEPYAEE 214 Query: 172 IAHAI-VKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPA-----TRSFQALRIFVNNEI 225 IA AI K R+ +TT L +I++T+ F A R FQALRI VNNE Sbjct: 215 IAEAITEKIRKGGKIETTTGLHQVIEETLAFIPEKERKEAVRKSSQRVFQALRIDVNNEF 274 Query: 226 EELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF 285 E L L LK GG + +++FHS EDRLVKK F + + + Sbjct: 275 EVLYDFLDKLPGVLKPGGKVAILTFHSGEDRLVKKSFKQWKKEGL--------------Y 320 Query: 286 QSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319 I K V+ P++E+ N R++ K+R +R E Sbjct: 321 SEIAKDVIRPSKEECFRNSRAKCTKMRWAIRAEE 354 >gi|321460668|gb|EFX71708.1| hypothetical protein DAPPUDRAFT_111399 [Daphnia pulex] Length = 322 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 117/322 (36%), Positives = 168/322 (52%), Gaps = 27/322 (8%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQETMRDY 81 + ++V+ + P + LD TFGAGG++R V LDRDP A + + Sbjct: 1 MHKEVLEMFQPQQNQKFLDLTFGAGGHTRKLLSSARNITVYTLDRDPLAYELAIQLASET 60 Query: 82 -KEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 Q FS L + + DG++ D G SSMQ D +RGFS K+GPLDMR Sbjct: 61 TNGQVVPLLGKFSDLPQLLSNPETCNFFDGILVDCGCSSMQFDTRERGFSLSKNGPLDMR 120 Query: 137 MSCSGI----SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQTTQDL 191 M + + SA D++ + L+R+L + GEEKQA +IA AI++ R QTT +L Sbjct: 121 MDQNRLENQPSAKDILANIDEDSLSRVLKVYGEEKQAKKIARAIIEARYLFKSLQTTHEL 180 Query: 192 SSLIQKTVYFSKNNRI-----HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 + LI+ T S H AT++FQALRI VN+E+ EL +R A + LK GG L+ Sbjct: 181 AQLIESTCGLSTRTDKLQRPSHVATKTFQALRILVNDELNELEFAVRYAHRTLKIGGKLV 240 Query: 247 VVSFHSLEDRLVKKFFAS----------RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296 ++FHSLEDR+VK+ + ++P ++SI K V+VP+ Sbjct: 241 TITFHSLEDRIVKEHLHGFDYSAKSEEIYKNYGRQLDPLLPLADMERKWESINKHVLVPS 300 Query: 297 QEDVAFNRRSRSAKLRAGMRTV 318 E+V N RSRSAKLRA ++ Sbjct: 301 DEEVNGNPRSRSAKLRAAIKIR 322 >gi|203287765|ref|YP_002222780.1| S-adenosyl-methyltransferase [Borrelia recurrentis A1] gi|263445859|sp|B5RRC5|RSMH_BORRA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|201084985|gb|ACH94559.1| S-adenosyl-methyltransferase [Borrelia recurrentis A1] Length = 297 Score = 292 bits (748), Expect = 5e-77, Method: Composition-based stats. Identities = 103/308 (33%), Positives = 164/308 (53%), Gaps = 24/308 (7%) Query: 20 HVPVLLEKVIALLN---PAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCG 74 H+PVLLE VI L+ G V +D T G GG+S++ N VI ++RD ++ Sbjct: 6 HIPVLLEDVINLVETIYLDDGFVFVDCTLGEGGHSKAVLSKYQNINVIGIERDDVVLNRA 65 Query: 75 QETMRDYKEQFSLFQATFSQLQ-DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +E++ ++ ++ S F Y + + ++ DLG+S RGFSF + L Sbjct: 66 KESLVEFSKRISYSNTWFDDFFCKYSLHRRFNFILADLGISMFHYKVAGRGFSFLEDEKL 125 Query: 134 DMRMSCS--GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 DMR+ S GISA D+VN + + L ++ LG E + RI AI++ R+ QT+++L Sbjct: 126 DMRLFPSDGGISAYDIVNTFDKEMLENLIYELGGEYYSRRIVKAILEYRKINKIQTSREL 185 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I K K +I+PAT++FQALRI+VN+E++ L + L L G+L +++FH Sbjct: 186 QRIICKAYPNVKF-KINPATKTFQALRIYVNDELDRLKRSLPLWIANLSKNGILAIITFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLED++VK+FF + +TKK + + ++ +N SRSAKL Sbjct: 245 SLEDKIVKEFFKGLTKDKYC---------------ILTKKPITSSFKEKQYNNASRSAKL 289 Query: 312 RAGMRTVE 319 RA + E Sbjct: 290 RAVKKLYE 297 >gi|219684724|ref|ZP_03539667.1| S-adenosyl-methyltransferase MraW [Borrelia garinii PBr] gi|219672086|gb|EED29140.1| S-adenosyl-methyltransferase MraW [Borrelia garinii PBr] Length = 296 Score = 292 bits (748), Expect = 5e-77, Method: Composition-based stats. Identities = 98/306 (32%), Positives = 169/306 (55%), Gaps = 24/306 (7%) Query: 20 HVPVLLEKV---IALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 H PVLL+ + I L + +D+T G G ++++ + +++ ++RDP + Sbjct: 7 HFPVLLDAICKLIEDLPVKSDLIYIDSTLGEGAHAKAILEKYDFLSLVGIERDPQILERA 66 Query: 75 QETMRDYKEQFSLFQATFSQLQ-DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ + +KE+ + F F +Y + + ++ DLG+S +GFSF + PL Sbjct: 67 KQFLLVFKERITYFNDWFDNFFVNYPLNVKANFILVDLGISMFHYKGSKKGFSFLEDEPL 126 Query: 134 DMRMSCSGISAS--DVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 DMR+ S S S ++VN + DL ++ L E + RI+ AIV+ R+ +TT++L Sbjct: 127 DMRLCSSSCSISAAEIVNTFSKYDLESLIYDLSNEHYSRRISKAIVEYRKIKKIETTKEL 186 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++I K FSK +I+PAT++FQALRI+VN+E+ L + L + L G+L +++FH Sbjct: 187 QAVINKVYPFSK-AKINPATKTFQALRIYVNDELARLKRSLPLWIENLAKDGILAIITFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 S+EDR+VK FF S S ++ I+KK ++P+ +++ N+ SRSAKL Sbjct: 246 SIEDRIVKDFFRSLSCD---------------LYAKISKKPIIPSFDEIKKNKPSRSAKL 290 Query: 312 RAGMRT 317 RA + Sbjct: 291 RALKKI 296 >gi|291523548|emb|CBK81841.1| S-adenosyl-methyltransferase MraW [Coprococcus catus GD/7] Length = 352 Score = 291 bits (746), Expect = 8e-77, Method: Composition-based stats. Identities = 100/331 (30%), Positives = 162/331 (48%), Gaps = 31/331 (9%) Query: 3 SKSCKTMSSAIHH---TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG- 58 K +T+ I G H+ +++++++ L PG+ LDAT G GG++ + + Sbjct: 35 EKYGETVEKVIRKGGTPAGMHISIMVQEILDFLQIQPGQRGLDATLGYGGHTSAMLRCLN 94 Query: 59 --SNVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLG 112 ++ ALD D ++ +E +R+ + ++ + F+ + + G D ++ DLG Sbjct: 95 GEGHLTALDVDAIEMAKTEERLRNQGFGPDILTVRKINFANIDEVAEKDGKFDFILADLG 154 Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASR 171 VSSMQID DRGFS++ GPLD+R+ + G AS+ + + +L +E A+ Sbjct: 155 VSSMQIDNPDRGFSYKYDGPLDLRLDQTKGEPASERLKHVTRDEFEGMLIENSDEPYAAE 214 Query: 172 IAHAIVKR-RQSAPFQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEI 225 IA +++ ++ P TT L LI+K + K R+FQALRI VN+E Sbjct: 215 IASVVMQELKKGHPVDTTSKLRELIEKALVRVPAADRKEAVKKSCARTFQALRIDVNSEF 274 Query: 226 EELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF 285 E L L+ L GG + V++FHS EDRLVKK F N ++ Sbjct: 275 EVLEAFLQKLPDVLNPGGRVAVLTFHSGEDRLVKKSFKE--------------NVKAGIY 320 Query: 286 QSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 K V+ P+ E+ N R+ S KLR +R Sbjct: 321 SEAAKDVIRPSAEECRCNSRAHSTKLRWAVR 351 >gi|203284227|ref|YP_002221967.1| S-adenosyl-methyltransferase [Borrelia duttonii Ly] gi|263445883|sp|B5RLD2|RSMH_BORDL RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|201083670|gb|ACH93261.1| S-adenosyl-methyltransferase [Borrelia duttonii Ly] Length = 297 Score = 291 bits (746), Expect = 8e-77, Method: Composition-based stats. Identities = 104/308 (33%), Positives = 165/308 (53%), Gaps = 24/308 (7%) Query: 20 HVPVLLEKVIALLN---PAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCG 74 H+PVLLE VI L+ G V +D T G GG+S++ N VI ++RD ++ Sbjct: 6 HIPVLLEDVINLVETIYLDDGFVFVDCTLGEGGHSKAVLSKYQNINVIGIERDDVVLNRA 65 Query: 75 QETMRDYKEQFSLFQATFSQLQ-DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +E++ ++ ++ S F Y + + ++ DLG+S G RGFSF + L Sbjct: 66 KESLVEFSKRISYSNTWFDDFFCKYSLHRRFNFILADLGISMFHYKVGGRGFSFLEDEKL 125 Query: 134 DMRMSCS--GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 DMR+ S GISA D+VN + + L ++ LG E + RI AI++ R+ QT+++L Sbjct: 126 DMRLFPSDGGISAYDIVNTFDKEMLENLIYELGGEYYSRRIVKAILEYRKINKIQTSREL 185 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I K K +I+PAT++FQALRI+VN+E++ L + L L G+L +++FH Sbjct: 186 QRIICKAYPNVKF-KINPATKTFQALRIYVNDELDRLKRSLPLWIANLSKNGILAIITFH 244 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLED++VK+FF + +TKK + + ++ +N SRSAKL Sbjct: 245 SLEDKIVKEFFKGLTKDQYC---------------ILTKKPITSSFKEKQYNNASRSAKL 289 Query: 312 RAGMRTVE 319 RA + E Sbjct: 290 RAVKKLYE 297 >gi|219685637|ref|ZP_03540452.1| S-adenosyl-methyltransferase MraW [Borrelia garinii Far04] gi|219672825|gb|EED29849.1| S-adenosyl-methyltransferase MraW [Borrelia garinii Far04] Length = 296 Score = 291 bits (746), Expect = 9e-77, Method: Composition-based stats. Identities = 98/306 (32%), Positives = 169/306 (55%), Gaps = 24/306 (7%) Query: 20 HVPVLLEKV---IALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 H PVLL+ + I L + +D+T G G ++++ + +++ ++RDP + Sbjct: 7 HFPVLLDAICKLIEDLPVKSDLIYIDSTLGEGAHAKAILEKYDFLSLVGIERDPQILERA 66 Query: 75 QETMRDYKEQFSLFQATFSQLQ-DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ + +KE+ + F F +Y + + ++ DLG+S +GFSF + PL Sbjct: 67 KQFLLVFKERITYFNDWFDNFFVNYPLNVKANFILVDLGISMFHYKGSKKGFSFLEDEPL 126 Query: 134 DMRMSCSGISAS--DVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 DMR+ S S S ++VN + DL ++ L E + RI+ AIV+ R+ +TT++L Sbjct: 127 DMRLCSSSCSISAAEIVNTFSKYDLESLIYDLSNEHYSRRISKAIVEYRKIKKIETTKEL 186 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++I K FSK +I+PAT++FQALRI+VN+E+ L + L + L G+L +++FH Sbjct: 187 QAVINKVYPFSK-AKINPATKTFQALRIYVNDELARLKRSLPLWIENLAKDGILAIITFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 S+EDR+VK FF S S ++ I+KK ++P+ +++ N+ SRSAKL Sbjct: 246 SIEDRIVKDFFRSLSCD---------------LYARISKKPIIPSFDEIKKNKPSRSAKL 290 Query: 312 RAGMRT 317 RA + Sbjct: 291 RALKKI 296 >gi|307128732|ref|YP_003880762.1| S-adenosyl-methyltransferase MraW [Candidatus Sulcia muelleri CARI] gi|306483194|gb|ADM90064.1| S-adenosyl-methyltransferase MraW [Candidatus Sulcia muelleri CARI] Length = 306 Score = 290 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 95/304 (31%), Positives = 159/304 (52%), Gaps = 15/304 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H PVLL++ + LL + +D TFG GG+S S K +IA D+D +++ Sbjct: 9 HNPVLLDETLTLLVKEIDGIYIDTTFGGGGHSFSLLKKLNNKGRLIAFDQDIYSIKKNNI 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 +F+L + + ++ + V G++ DLG+SS QI+ RGFS + + L Sbjct: 69 I----DTRFNLVKTNYIFIKKILKRYNLNKVSGILADLGISSHQINTPKRGFSIRSNSIL 124 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM I+A ++N + +L I I G+ K + +A I+K+R+ + T DL Sbjct: 125 DMRMDTFKKINAKYIINNYSYNELYNIFKIYGDRKNSKFLAKLIIKQRKKKIIKYTFDLI 184 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++++ +F K ++ FQ+LRI VN+EI L L ++ LK GG + V+S+HS Sbjct: 185 NILK--FFFKKKIENKFLSKIFQSLRIEVNDEINALKYLLNNSLSILKPGGRIAVISYHS 242 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 +EDR+VKKF + + + +N P + + K + ++E++ N RSRSA LR Sbjct: 243 IEDRIVKKFLKTGNFNGVVSYDGYGNNLSPLI--LLKPKRIFSSKEEIKKNNRSRSAILR 300 Query: 313 AGMR 316 + Sbjct: 301 IAEK 304 >gi|189219430|ref|YP_001940071.1| SAM methyltransferase involved MraW [Methylacidiphilum infernorum V4] gi|263456445|sp|B3DVX0|RSMH_METI4 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|189186288|gb|ACD83473.1| SAM methyltransferase involved MraW [Methylacidiphilum infernorum V4] Length = 316 Score = 290 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 100/308 (32%), Positives = 161/308 (52%), Gaps = 10/308 (3%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCG 74 + H+PV+L++ + +P + +D TFG GG++ + G V+ALD D A Sbjct: 6 EEVESHIPVMLKEFLKHCSPKRDEQWIDGTFGYGGHTTALLDKGCKVLALDTDEDAQKRA 65 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK-S 130 E +++ E+F F+ FS++ + G VDG++ DLGVS Q+ RGFSFQ Sbjct: 66 -EILKEKGEEFYFFRKNFSEMAEACFQMGWTAVDGILLDLGVSLGQLKDPKRGFSFQFPD 124 Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM + + + ++N + + L ++ + K++ ++A+ IV+ R + P + Sbjct: 125 APLDMRMDRTRERTGAALLNTLSKEQLVQLFSVACNMKESQKLANEIVRFRSTGPIKKVG 184 Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 D ++ + ++I+ ATR F ALRI VN E+E L + LR K LK GG + V+S Sbjct: 185 DFLEIVTRARLLK--SKINAATRPFLALRIAVNEELEHLEKALREGTKLLKGGGRIAVIS 242 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHS EDR+VK+F S N F + + V+ + E+ N RSRSA Sbjct: 243 FHSAEDRIVKEFMRSHCLPKKGEGVAEEENHREMFFYKVER--VLVSLEERKNNPRSRSA 300 Query: 310 KLRAGMRT 317 +LR + Sbjct: 301 RLRIAWKI 308 >gi|72383375|ref|YP_292730.1| S-adenosyl-methyltransferase MraW [Prochlorococcus marinus str. NATL2A] gi|88909209|sp|Q46HK1|RSMH_PROMT RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|72003225|gb|AAZ59027.1| bacterial methyltransferase [Prochlorococcus marinus str. NATL2A] Length = 304 Score = 290 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 106/310 (34%), Positives = 166/310 (53%), Gaps = 30/310 (9%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPG-----KVILDATFGAGGYSRSFCKMGS--NVIALDR 66 + +H+PV+ +++I L P +I+DAT G GG+S + +I LD+ Sbjct: 8 SSSNFNHIPVMGKEIIRSLKELPSELTKKGLIIDATIGGGGHSAQILENFPGIKIIGLDQ 67 Query: 67 DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126 DP A+ + + + + + F+ + ++ + V+ DLGVSS Q+D RGFS Sbjct: 68 DPMAIKAASKKLIKFGTRIEIISTNFADFSHH--EQAI-CVLADLGVSSHQLDEPSRGFS 124 Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAP 184 F+ +GP+DMRM+ G SA++++ + ++L ++ LGEEK++ RIA I ++ P Sbjct: 125 FRLNGPIDMRMNPKEGSSAAELIETLSEQNLADLIYELGEEKRSRRIARKIKNDLAENGP 184 Query: 185 FQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 + TQDLS I + RIHP+TR+FQALRI VNNE+ L L A L G Sbjct: 185 YSGTQDLSYAIAGCFPPKQRYGRIHPSTRTFQALRIAVNNELGSLESLLLKAPNWLLENG 244 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 L +V+SFHSLEDR VK F + + + ++KK + + E++ N Sbjct: 245 LFMVMSFHSLEDRRVKSSFKTDN-----------------RLKVLSKKPIRASPEEIELN 287 Query: 304 RRSRSAKLRA 313 RS+SAKLR Sbjct: 288 PRSKSAKLRI 297 >gi|242060440|ref|XP_002451509.1| hypothetical protein SORBIDRAFT_04g003030 [Sorghum bicolor] gi|241931340|gb|EES04485.1| hypothetical protein SORBIDRAFT_04g003030 [Sorghum bicolor] Length = 445 Score = 290 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 120/351 (34%), Positives = 166/351 (47%), Gaps = 52/351 (14%) Query: 19 DHVPVLLEKVIALLN-PAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCG 74 HVPVLL +V+A P P + +D T GA G+S + + + I +D DP A+ G Sbjct: 95 HHVPVLLGEVLAAFRRPRPLRSFVDCTLGAAGHSLAMMEAHPELELYIGMDVDPSALEIG 154 Query: 75 -----------------------QETMRDYK--EQFSLFQATFSQLQDYVP--DKGVDGV 107 QET+R Y + F + + + + GVDG+ Sbjct: 155 RGHIETFLAGREREANGREEDVLQETLRAYTHVKNFKYIKQVLGSVDESLAVGSSGVDGI 214 Query: 108 VFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEE 166 + DLG+SSMQ++ +RGFS + GPLDMRM + A D++N +L RIL GEE Sbjct: 215 LIDLGMSSMQVNRSNRGFSVLQDGPLDMRMDPKATLRAEDILNSWPEIELGRILREYGEE 274 Query: 167 KQASRIAHAIVKRRQSAPFQTTQDLSSLIQK--TVYFSKNNRIHPATRSFQALRIFVNNE 224 + IVK R + +T DL LIQ+ ++ + I ATR FQALRI VN+E Sbjct: 275 SNWQSVQKQIVKARATGGLHSTGDLVKLIQRMCSISSGRQGWIKTATRVFQALRIAVNDE 334 Query: 225 IEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH---------- 274 + L L S L GG L V+SFHSLEDR+VKK F A Sbjct: 335 LRVLEDSLHSCFDCLATGGRLAVISFHSLEDRIVKKTFLELIHGGEADDEEDDKDDLALT 394 Query: 275 MIPSNAHPAVFQ--------SITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 I + P Q +TK+ + P+QE+ N+R RSAKLR + Sbjct: 395 DIVNEDEPWFGQRVQGRNGTVLTKRPITPSQEEEKLNQRCRSAKLRVIQKN 445 >gi|153006714|ref|YP_001381039.1| S-adenosyl-methyltransferase MraW [Anaeromyxobacter sp. Fw109-5] gi|263446704|sp|A7HH59|RSMH_ANADF RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|152030287|gb|ABS28055.1| S-adenosyl-methyltransferase MraW [Anaeromyxobacter sp. Fw109-5] Length = 310 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 122/304 (40%), Positives = 172/304 (56%), Gaps = 5/304 (1%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H VL +V+ +L PAPGK++LD T G GG+S + G+ VI LD+DP A++ + Sbjct: 7 HASVLAREVVEVLRPAPGKLLLDGTLGGGGHSELLLERGARVIGLDKDPRALAAATARLA 66 Query: 80 DYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + E F +A F ++ + GVDG + DLGVSS Q+D DRGFSF + GPLDMR Sbjct: 67 RWGEAFRAVRADFRDAKNVLSALGLTGVDGTLVDLGVSSPQLDQADRGFSFSRPGPLDMR 126 Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 M G D++ + + ++L RIL GEE A IA A+ + +S T L+ ++ Sbjct: 127 MGDEGERLEDLLRRIDERELARILREYGEEPFARPIARAVKRAVESDEALDTARLADIVA 186 Query: 197 KTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 K + RIHPATR+FQALRI VN+E+ LA L L GG +SFHSLED Sbjct: 187 KAIPRKAWPRRIHPATRTFQALRIAVNDELGALAAWLDGLPATLNVGGRAAAISFHSLED 246 Query: 256 RLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 R+VK+ F + + + + A F +IT+K VV ++ +VA N R+RSAKLRA Sbjct: 247 RMVKERFRALTQACTCPPDLPVCACGARASFAAITRKAVVASEAEVAENPRARSAKLRAV 306 Query: 315 MRTV 318 + Sbjct: 307 EKIR 310 >gi|183221148|ref|YP_001839144.1| S-adenosyl-methyltransferase MraW [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911239|ref|YP_001962794.1| S-adenosylmethionine-dependentmethyltransferase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|263456288|sp|B0S989|RSMH_LEPBA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|263456310|sp|B0SRS3|RSMH_LEPBP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|167775915|gb|ABZ94216.1| S-adenosylmethionine-dependentmethyltransferase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779570|gb|ABZ97868.1| S-adenosyl-methyltransferase MraW [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 314 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 113/315 (35%), Positives = 170/315 (53%), Gaps = 31/315 (9%) Query: 19 DHVPVLLEKVIALL----NPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVS 72 H+PVL +VI+LL NP P + LD T G GG+S+ K +I +DRD + Sbjct: 5 PHIPVLPSEVISLLQQTKNPNP-QWFLDGTAGEGGHSKLILKTFPEAKLILIDRDAVMLE 63 Query: 73 CGQ-ETMRDYK--EQFSLFQATFSQLQ-DYVPDKG---VDGVVFDLGVSSMQIDCGDRGF 125 + E +++ ++ FQ FS++ + + + G +DG + DLGVS RGF Sbjct: 64 RAKKEILKEIGSLDRVHAFQMNFSEVDSELLQEVGCPSLDGALVDLGVSLFHFLHSGRGF 123 Query: 126 SFQKSGPLDMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 +F+ PLDMR+ + G +A+DVVN ++V L ++ GEE+ A +IA+ IV+ R Sbjct: 124 TFKNDEPLDMRLEANIGGKTAADVVNYSSVLHLKKVFWEYGEERWALKIANNIVQTRHKK 183 Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 F T DL L++ ++ HPATR FQALRI VN E+ +G+R+ + L G Sbjct: 184 KFGTNTDLVKLVEASIPRKFWPKESHPATRIFQALRIEVNEELVHAEKGIRALAQCLGIG 243 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 G+L +SFHSLEDR+VK F F+ +TKK ++P++ ++ Sbjct: 244 GVLTCISFHSLEDRIVKWTFRDLKDNGP--------------FEILTKKPILPSETEIKE 289 Query: 303 NRRSRSAKLRAGMRT 317 NR SRSAKLR M+ Sbjct: 290 NRASRSAKLRGLMKI 304 >gi|312601353|gb|ADQ90608.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Mycoplasma hyopneumoniae 168] Length = 291 Score = 290 bits (742), Expect = 3e-76, Method: Composition-based stats. Identities = 99/295 (33%), Positives = 149/295 (50%), Gaps = 16/295 (5%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDY 81 +LE++I L P +D T G GG+S + + ++ D+D A+ + + Sbjct: 1 MLEELILALEINPKGFYVDLTLGRGGHSLAILEKISNGKLVVFDKDQDALDQTRPKLLAL 60 Query: 82 KEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138 K+ + + FS+ Y+ + G VDG + DLGVSS QID +RGFS+ K G LDMRM Sbjct: 61 KQNIEIIWSDFSRFDFYLENLGIQFVDGFIIDLGVSSPQIDDPERGFSYSKDGNLDMRMD 120 Query: 139 CS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK 197 S +SA V+N+ + L I G+ A IA AI+ R P +TT +L +L++K Sbjct: 121 KSQKLSAFIVLNEYPYEKLVEIFFKYGQIPYAREIARAIINSR---PLKTTFELVNLVKK 177 Query: 198 TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRL 257 + + + FQA+RI VNNE++ L + L K LK G + +++FHSLEDR+ Sbjct: 178 VIPALVLVKKNFIKNVFQAVRIEVNNELDSLQKLLEKLPKFLKQGSKVAIITFHSLEDRI 237 Query: 258 VKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 VKK F K + KV P ++ N R++SAKLR Sbjct: 238 VKKAFLDLIRKD-------KLEFFQKGLPKFSMKVFRPKANELKSNPRAKSAKLR 285 >gi|325067114|ref|ZP_08125787.1| S-adenosyl-methyltransferase MraW [Actinomyces oris K20] Length = 319 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 112/311 (36%), Positives = 171/311 (54%), Gaps = 24/311 (7%) Query: 11 SAIHHTIGDHVPVLLEKVIALLNPAPGK-------------VILDATFGAGGYSRSFCKM 57 + +G H PVLLE+ + LL PA V++D T G GG++ + + Sbjct: 8 ATAADAVGRHEPVLLERCLDLLAPAIEGAVSSTSTTAPARPVMIDCTLGMGGHTEAALER 67 Query: 58 GS--NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV------DGVVF 109 + V+ +DRDP A++ + + ++F QAT+ + + V D V+ Sbjct: 68 FTTLKVVGIDRDPEAIALASARLARFGDRFIAVQATYDAVGRVAREHSVRAEGTVDAVLM 127 Query: 110 DLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQ 168 DLGVSS+Q+D RGFS+ ++ PLDMRM S G++A D++ A+ +LTRIL GEE+ Sbjct: 128 DLGVSSLQLDEASRGFSYARTAPLDMRMDQSSGMTAQDLLESADAAELTRILRTYGEERF 187 Query: 169 ASRIAHAIVKRRQS-APFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIE 226 ASRIA AIV+RR+S P +TQDL+ L++++V + + N HPA R+FQALRI VN E++ Sbjct: 188 ASRIAAAIVRRRESGQPVTSTQDLAELVRQSVPAAARRNGGHPAKRTFQALRIAVNAELD 247 Query: 227 ELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ 286 L + + A +L+ GG L+V S+ SLEDR+VK+ A + + A + Sbjct: 248 VLERAVPRALNSLRVGGRLVVESYQSLEDRIVKRALAHGATSRAPQDLPVVPEADLPYLE 307 Query: 287 SITKKVVVPTQ 297 IT Sbjct: 308 LITNGAEKADA 318 >gi|51598567|ref|YP_072755.1| hypothetical protein BG0310 [Borrelia garinii PBi] gi|108868281|sp|Q661V8|RSMH_BORGA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|51573138|gb|AAU07163.1| conserved hypothetical protein [Borrelia garinii PBi] Length = 296 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 98/306 (32%), Positives = 167/306 (54%), Gaps = 24/306 (7%) Query: 20 HVPVLLEKV---IALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 H PVLL+ + I L + +D+T G G ++++ + +++ ++RDP + Sbjct: 7 HFPVLLDAICKLIEDLPVKSDLIYIDSTLGEGAHAKAILEKYDFLSLVGIERDPQILERA 66 Query: 75 QETMRDYKEQFSLFQATFSQLQ-DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ + +K + + F F +Y + + ++ DLG+S +GFSF + PL Sbjct: 67 KQFLFAFKGRITYFNDWFDNFFVNYPLNAKANFILVDLGISMFHYKGSKKGFSFLEDEPL 126 Query: 134 DMRMSCSGISAS--DVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 DMR+ S S S D+VN + DL ++ L E + RI+ AIV+ R+ +TT++L Sbjct: 127 DMRLCSSSCSISAADIVNTFSKYDLESLIYDLSNEHYSRRISKAIVEYRKIKRIETTKEL 186 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 ++I K FSK +I+PAT++FQALRI VN+E+ L + L + L G+L +++FH Sbjct: 187 QAVINKVYPFSK-AKINPATKTFQALRICVNDELARLKRSLPLWIENLAKDGILAIITFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 S+EDR+VK FF S S ++ I+KK ++P+ +++ N+ SRSAKL Sbjct: 246 SIEDRIVKDFFRSLSCD---------------LYAKISKKPIIPSFDEIKKNKPSRSAKL 290 Query: 312 RAGMRT 317 RA + Sbjct: 291 RALKKI 296 >gi|257458736|ref|ZP_05623859.1| S-adenosyl-methyltransferase MraW [Campylobacter gracilis RM3268] gi|257443724|gb|EEV18844.1| S-adenosyl-methyltransferase MraW [Campylobacter gracilis RM3268] Length = 311 Score = 289 bits (741), Expect = 4e-76, Method: Composition-based stats. Identities = 100/310 (32%), Positives = 160/310 (51%), Gaps = 15/310 (4%) Query: 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQ 75 H+PVL + IA + ++D T G GG+S + +IA DRD A+ + Sbjct: 3 APHIPVLFSQTIAAFSQLEDGYVIDCTLGYGGHSEGILTANPHLKLIACDRDAEAIEFSR 62 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + +K++ + +A FS++ +P++ V G++ D+GVSS+Q+D RGFS + Sbjct: 63 ERLSKFKDRIEIHKAKFSEILKILPEQKLRAVRGILADIGVSSLQLDKNCRGFSTKSDA- 121 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM S + A+ VVN+ + DL RI GE A+ IA I R +AP + + L Sbjct: 122 LDMRMDESAALDAAYVVNRYSQADLARIFREYGELTNANAIAAKIATARTNAPLTSAKAL 181 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE----KALKAGGLLIV 247 ++LI K I AT +FQA+RI VN+E+ EL + L E ++ + + Sbjct: 182 ANLI--GTKPVKGRSISTATLAFQAIRIEVNDELGELKRLLTLIEQKSRDSILTNATVAI 239 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305 +SFHSLEDR+VK+ F + + ++ + +TK + +++A N R Sbjct: 240 ISFHSLEDRIVKEQFKAWERDCVCPSEFMRCECGGDHSLGKILTKSPLTADAQELAQNSR 299 Query: 306 SRSAKLRAGM 315 + SAKLR Sbjct: 300 AASAKLRIFR 309 >gi|327540391|gb|EGF26977.1| S-adenosyl-methyltransferase MraW [Rhodopirellula baltica WH47] Length = 325 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 104/317 (32%), Positives = 163/317 (51%), Gaps = 35/317 (11%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---------SNVIALDRDPF 69 +HV V+ +++ + I+D T+G GG++R ++ VIA+DRDP Sbjct: 27 EHVSVMPNEIVQWVREINPTTIIDGTYGGGGHTRLLAEVLADAGADSDTPRVIAIDRDPA 86 Query: 70 AVSCGQE--TMRDYKEQFSLFQATFS---QLQDYVPDKGVDGVVFDLGVSSMQIDCGDRG 124 V ++ ++D + LF ++ + D + D +V DLG+SS Q+ +RG Sbjct: 87 VVRRDEQKSWIKD-DPRIELFLGSYESSPKALDALDLTHADALVLDLGLSSDQLADRNRG 145 Query: 125 FSFQ-KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV-KRRQ 181 F+F LD+R +G+ A + Q + K++ + GEE+ + RIA I + R+ Sbjct: 146 FTFTIDDAELDLRFDPENGVPAYRWLQQHSEKEIADAIYQFGEERFSRRIAKQIFLRARE 205 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 P +L + ++ V S+N+ IHPATR+FQALRI VN+E+ L + L+SA + Sbjct: 206 RNPVTKVGELVEICRRCVPRSRNHDIHPATRTFQALRIAVNDELGGLTRTLQSAPDWIAP 265 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 GG + V+SFHSLEDR+VK F ++ +TKK + PT E+V Sbjct: 266 GGRVAVISFHSLEDRIVKNAFRED-----------------HRWEILTKKPLRPTDEEVQ 308 Query: 302 FNRRSRSAKLRAGMRTV 318 N RSRSAKLR R Sbjct: 309 ANPRSRSAKLRVAKRVE 325 >gi|225388291|ref|ZP_03758015.1| hypothetical protein CLOSTASPAR_02026 [Clostridium asparagiforme DSM 15981] gi|225045638|gb|EEG55884.1| hypothetical protein CLOSTASPAR_02026 [Clostridium asparagiforme DSM 15981] Length = 350 Score = 289 bits (740), Expect = 5e-76, Method: Composition-based stats. Identities = 106/331 (32%), Positives = 160/331 (48%), Gaps = 31/331 (9%) Query: 3 SKSCKTMSSAIHH---TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG- 58 K T+S I G H+ + +++++ L PG+ LDAT G GG++ K Sbjct: 32 EKYSDTVSKVIQKGSTPAGMHISICVKEILDFLQIQPGQNGLDATLGYGGHTLEMLKCLE 91 Query: 59 --SNVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLG 112 ++ ALD DP + + D E ++ F+++ + G D V+ DLG Sbjct: 92 GKGHIHALDVDPIESEKTKARLADLGYGPEILTVRLQNFAEIDQVAAEAGRFDFVLADLG 151 Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASR 171 VSSMQID +RGF+F+ GPLD+RM+ GISA+ + + +++LT +L +E A Sbjct: 152 VSSMQIDNPERGFTFKAEGPLDLRMNPERGISAAQRLKEITLEELTGMLTENADEPYAEE 211 Query: 172 IAHAIVKR-RQSAPFQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEI 225 IA + R ++ TT L +I + F K + R+FQALRI VNNE Sbjct: 212 IAREVTGRLKRGEEIATTTKLYQVIGDALAFLPEKDRKEAVKKSSQRTFQALRIDVNNEY 271 Query: 226 EELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF 285 E L L + L GG +++FHS EDRLVKK F + + Sbjct: 272 EALYAFLEKLPEVLAPGGRAAILTFHSGEDRLVKKSFKQYKKEG-RYSDICEE------- 323 Query: 286 QSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 V+ P+QE+ A N R+RS K+R +R Sbjct: 324 ------VIRPSQEECARNSRARSTKMRWAVR 348 >gi|224531783|ref|ZP_03672415.1| S-adenosyl-methyltransferase MraW [Borrelia valaisiana VS116] gi|224511248|gb|EEF81654.1| S-adenosyl-methyltransferase MraW [Borrelia valaisiana VS116] Length = 296 Score = 289 bits (740), Expect = 5e-76, Method: Composition-based stats. Identities = 98/305 (32%), Positives = 168/305 (55%), Gaps = 24/305 (7%) Query: 20 HVPVLLEKV---IALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 H PVLL+ + I L + +D+T G G ++++ + ++I ++RD + Sbjct: 7 HFPVLLDAICKLIEDLPVKSDSIYIDSTLGEGTHAKAILEKYDFLSLIGIERDFQILQRA 66 Query: 75 QETMRDYKEQFSLFQATFSQL-QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ + ++++ + F F +Y + + ++ DLG+S +GFSF + PL Sbjct: 67 KQFLLIFEDRITYFNDWFDNFFANYPLNAKANFILVDLGISMFHYKGSKKGFSFLEDEPL 126 Query: 134 DMRMSCSGISAS--DVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 DMR+ S S S ++VN + DL ++ L E + RI+ AIV+ R+ QTT++L Sbjct: 127 DMRLCSSSCSISAAEIVNTFSKYDLEELIYDLSNEHYSRRISKAIVEYRKIKKIQTTKEL 186 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 S+I K FSK +I+PAT++FQALRI+VN+E+ L + L + L G+L +++FH Sbjct: 187 QSIINKVYPFSK-AKINPATKTFQALRIYVNDELTRLKRSLPLWVENLAKDGILAIITFH 245 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 S+EDR+VK FF S S ++ I+KK ++P+ +++ N+ SRSAKL Sbjct: 246 SIEDRIVKDFFRSLSFD---------------LYAKISKKPIIPSFDEIKKNKPSRSAKL 290 Query: 312 RAGMR 316 RA + Sbjct: 291 RAVKK 295 >gi|166033390|ref|ZP_02236219.1| hypothetical protein DORFOR_03116 [Dorea formicigenerans ATCC 27755] gi|166027747|gb|EDR46504.1| hypothetical protein DORFOR_03116 [Dorea formicigenerans ATCC 27755] Length = 358 Score = 289 bits (739), Expect = 5e-76, Method: Composition-based stats. Identities = 93/330 (28%), Positives = 159/330 (48%), Gaps = 31/330 (9%) Query: 3 SKSCKTMSSAI---HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-- 57 K T+ I G H+ + +++++ L+ PG+ LDAT G GG++R + Sbjct: 42 EKYGDTIEKVIGKGSTPAGMHISICVQEILDFLDIKPGQHGLDATLGYGGHTRKMLEKLE 101 Query: 58 -GSNVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLG 112 ++ LD DP ++ +RD + ++ F+ + + G D V+ DLG Sbjct: 102 GHGHIYGLDVDPIESEKTKKRLRDLGYGEDILTVKLCNFADIDKVAEEHGKFDFVLADLG 161 Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASR 171 VSSMQID +RGF+++ GPLD+RM+ G SA+ + + +++ +L +E A+ Sbjct: 162 VSSMQIDNPERGFTYKFDGPLDLRMNPQKGESAAQRLKSMDAEEIEGMLVENSDEPYAAE 221 Query: 172 IAHAIVKRRQSAP-FQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEI 225 I ++ R+ +TT +L I++ + F K R+FQALRI VN E Sbjct: 222 ITEVLMNWRKHGKSPETTTELKEAIEEALTFLPEKEKKEAVKKSCQRTFQALRIDVNQEF 281 Query: 226 EELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF 285 E L L + + GG + +++FHS EDRLVK+ F ++ Sbjct: 282 EVLYAFLDKLPQVMNPGGRIAILTFHSGEDRLVKRAFKE--------------GKKAGIY 327 Query: 286 QSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 I K V+ P+ ++ A N R++ K+R + Sbjct: 328 SEICKDVIRPSAQECARNPRAKCTKMRWAI 357 >gi|302669504|ref|YP_003829464.1| S-adenosyl-methyltransferase MraW family protein [Butyrivibrio proteoclasticus B316] gi|302393977|gb|ADL32882.1| S-adenosyl-methyltransferase MraW family [Butyrivibrio proteoclasticus B316] Length = 347 Score = 289 bits (739), Expect = 6e-76, Method: Composition-based stats. Identities = 98/331 (29%), Positives = 155/331 (46%), Gaps = 31/331 (9%) Query: 3 SKSCKTMSSAIHH---TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG- 58 K T++ I G H+ +++++++ +L PG+ LD T G GG++R + Sbjct: 30 EKYADTVAHVISKGSTPAGMHISIMVKEILEVLKIQPGEQGLDCTLGYGGHTRKMLEQLT 89 Query: 59 --SNVIALDRDPFAVSCGQETMRD--YKEQ-FSLFQATFSQLQDYVPDKG-VDGVVFDLG 112 + LD DP + E +R+ + E F F+ + + G D V+ DLG Sbjct: 90 GKGCIYGLDVDPIESAKTVERLRNAGFDENAFKFRLINFANIDKVAEEAGKFDFVLADLG 149 Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASR 171 VSSMQID RGFS++ GPLD+R+ G SA++ ++ + +L +E A Sbjct: 150 VSSMQIDDPKRGFSYKIDGPLDLRLDPEHGESAAERLHNITRDEFVGMLVENSDEPYAEE 209 Query: 172 IAHAIVK-RRQSAPFQTTQDLSSLIQKTVYF-SKNNR----IHPATRSFQALRIFVNNEI 225 IA + ++ P TT L S I+ ++ K + R FQALRI VN+E Sbjct: 210 IADKVFNLMKKGDPMDTTTALRSAIENALWKLPKEEKDQAIKKSCARVFQALRIDVNSEF 269 Query: 226 EELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF 285 E L L L G + +++FHS EDRLVKK F +F Sbjct: 270 EVLYSFLEKLPGILNPGARVAILTFHSGEDRLVKKAFKE--------------CKKAGLF 315 Query: 286 QSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 I++ V+ P+ E+ N RS+S K+R ++ Sbjct: 316 SEISEDVIRPSAEECRVNPRSKSTKMRWAIK 346 >gi|307211743|gb|EFN87738.1| Putative S-adenosyl-L-methionine-dependent methyltransferase CG14683 [Harpegnathos saltator] Length = 325 Score = 289 bits (739), Expect = 6e-76, Method: Composition-based stats. Identities = 115/324 (35%), Positives = 172/324 (53%), Gaps = 30/324 (9%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQETMRDY 81 + ++V++ + P+PGK +D TFGAGG++ + ++ ALDRD A Q+ + Y Sbjct: 1 MAQEVLSYIEPSPGKTYIDMTFGAGGHATKLLEHSPDIKIFALDRDSVAHEYAQKLSQKY 60 Query: 82 KEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 Q FS+L + + DG +FD G SSMQ D G RGFS K GPLDMR Sbjct: 61 PGQVIPLLGKFSELPQLLKQHNIGRNSIDGFLFDFGCSSMQFDIGIRGFSLSKDGPLDMR 120 Query: 137 MS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQTTQDL 191 M +A+DV+ +A +DL RI+ G+EK+A +IA AI++ R +TT++L Sbjct: 121 MDGFRCSGQPTAADVLERATEEDLARIIKFYGQEKRAKKIARAIIEARYMFRKLETTREL 180 Query: 192 SSLIQKTVY--FSKNNRI---HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 + LI+ T+ K+N H AT++FQALRIFVNNE+ E+ + A LK G LI Sbjct: 181 AELIESTLSDEIRKDNLGRFSHNATKTFQALRIFVNNELNEINYAMLLARIYLKVTGRLI 240 Query: 247 VVSFHSLEDRLVKKFFA-------------SRSGKVMAVRHMIPSNAHPAVFQSITKKVV 293 +SFHSLED +VK+ + + ++ + K V+ Sbjct: 241 TISFHSLEDTIVKRHISGNITDNVANTISLKYANPGKIFDANELEMLTQTPWKMMHKHVL 300 Query: 294 VPTQEDVAFNRRSRSAKLRAGMRT 317 +PT E++ N R+RSAK RA ++ Sbjct: 301 LPTAEEIETNPRARSAKFRAILKV 324 >gi|297243796|ref|ZP_06927726.1| S-adenosylmethionine-dependent methyltransferase [Gardnerella vaginalis AMD] gi|296888217|gb|EFH26959.1| S-adenosylmethionine-dependent methyltransferase [Gardnerella vaginalis AMD] Length = 345 Score = 289 bits (739), Expect = 6e-76, Method: Composition-based stats. Identities = 102/318 (32%), Positives = 163/318 (51%), Gaps = 11/318 (3%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIA 63 M+ + H PVLL+ + L+ P G +++D T G G++ +F K +I Sbjct: 1 MTDVMKDITAIHAPVLLQDCVDLVTPSLQHKGAIVVDCTLGLAGHATAFLKAAPFATLIG 60 Query: 64 LDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQDYVPDKGVDGVVF---DLGVSSMQI 118 +DRD A+S + MR +F A F ++ + + + +DG+ DLG+SS+QI Sbjct: 61 IDRDAEALSLATQRMRSEGLENRFIPAHAAFDEIDEVLRENRIDGIDAAFMDLGLSSLQI 120 Query: 119 DCGDRGFSFQKSGPLDMRMSCSGISASDVVNQ-ANVKDLTRILGILGEEKQASRIAHAIV 177 D DRGFS+ LDMRM + + + + + + LTRI GEE+ AS IA IV Sbjct: 121 DETDRGFSYSHDTALDMRMDTTQATTAATILATYDSRGLTRIFREYGEERFASLIARRIV 180 Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 + R + P T+ L SL+ + + +PA R FQALRI VN E+++L+ L Sbjct: 181 EVRATEPIATSGQLVSLVDSVIPKAHRATGNPAKRVFQALRIEVNGELDKLSCTLPKIAL 240 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297 L+ G L+V S+HSLED VK+F + + + F+++T+ + ++ Sbjct: 241 HLREHGRLVVESYHSLEDTAVKRFMNQGLTVDVPANMPVIPDDAQPFFKALTRGAMKASK 300 Query: 298 EDVAFNRRSRSAKLRAGM 315 E++ N RS S +LRA Sbjct: 301 EEIVHNTRSSSVRLRAVE 318 >gi|160940252|ref|ZP_02087597.1| hypothetical protein CLOBOL_05141 [Clostridium bolteae ATCC BAA-613] gi|158436832|gb|EDP14599.1| hypothetical protein CLOBOL_05141 [Clostridium bolteae ATCC BAA-613] Length = 367 Score = 288 bits (737), Expect = 9e-76, Method: Composition-based stats. Identities = 96/331 (29%), Positives = 160/331 (48%), Gaps = 31/331 (9%) Query: 3 SKSCKTMSSAIHH---TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG- 58 K +T++ I +G H+P+++ +++ L PG+ LDAT G GG++ + Sbjct: 45 EKYPETVAKVIQKGSTPVGMHIPIMVNEILEFLQIQPGQTGLDATLGYGGHTSRMLERLE 104 Query: 59 --SNVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLG 112 ++ ALD D + ++ + E ++ + F+ + + G +D V+ DLG Sbjct: 105 SKGHIYALDVDSIEMEKTRQRLEHMGYGPEILTIRKLNFANIDQIAGEFGPLDFVLADLG 164 Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASR 171 VSSMQID RGFSF+K GPLD+R+ G AS+ + ++LT +L +E A Sbjct: 165 VSSMQIDNPSRGFSFKKEGPLDLRLDPLKGEPASERLKGLTQEELTGMLMENSDEPYAEE 224 Query: 172 IAHAIV-KRRQSAPFQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEI 225 IA ++ + ++ TT L ++ + + F K R+FQALRI VN+E Sbjct: 225 IARTVMGEIKRGREVATTTRLYEMVDRALAFIPEEERKEAVKKSCQRTFQALRIDVNSEF 284 Query: 226 EELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF 285 E L + L LK GG +++FHS EDR+VKK F ++ Sbjct: 285 EVLYEFLDKLPGVLKPGGRAAILTFHSGEDRIVKKSFKEM--------------YRAGLY 330 Query: 286 QSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 + V+ P+ E+ N R+ S K+R ++ Sbjct: 331 SQVAGDVIRPSAEECRMNSRAHSTKMRWAIK 361 >gi|206602140|gb|EDZ38622.1| S-adenosyl-methyltransferase (MraW) [Leptospirillum sp. Group II '5-way CG'] Length = 307 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 102/301 (33%), Positives = 158/301 (52%), Gaps = 21/301 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQ-ETM 78 H+PV+ ++V+ +L+ PG+ +DAT G GG++R+ + G +VIA+DRDP A+ + E + Sbjct: 17 HLPVMTKEVLEVLDVQPGQWYVDATLGQGGHARAILEAGGSVIAIDRDPKAIEKARLELL 76 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVD--GVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + E+ L + + +++ GVD GVV D G S Q G SF GPLDMR Sbjct: 77 PVFGERLRLTCMNHAGMGEFLSSMGVDVSGVVLDSGWSMAQASESGAGLSFDAEGPLDMR 136 Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT-QDLSSL 194 M + +A D++ + ++L I GEE A I+ A+V+ R T ++L++ Sbjct: 137 MDPTLQRTAMDILEHQSAEELAEIFSNFGEEPLAMPISRALVQSRSRGRLPRTPKELAAF 196 Query: 195 IQKTVYFS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 + Y + +R HPATR F ALRI VN EI+ L +G+ L +G L V++FHS Sbjct: 197 VSGVYYRKGYRRSRRHPATRVFMALRIEVNGEIDSLVRGVSGVRSILVSGARLAVLTFHS 256 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 EDR +K F + + + K V+P + ++ N RSRSAKLR Sbjct: 257 REDREIKHLFRGWVREGWG--------------RLLQSKPVLPGKAEIEQNPRSRSAKLR 302 Query: 313 A 313 Sbjct: 303 V 303 >gi|320102436|ref|YP_004178027.1| S-adenosyl-methyltransferase MraW [Isosphaera pallida ATCC 43644] gi|319749718|gb|ADV61478.1| S-adenosyl-methyltransferase MraW [Isosphaera pallida ATCC 43644] Length = 309 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 111/306 (36%), Positives = 161/306 (52%), Gaps = 32/306 (10%) Query: 20 HVPVLLEKVIALLNPAPGK--VILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCG 74 HVPVL + V+ L PG ++LD T GAGG++ + VI LDRDP + Sbjct: 27 HVPVLPQAVLEAL---PGGEVILLDGTVGAGGHAALLARRLTGRGRVIGLDRDPAMLELA 83 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSM---QIDCGDRGFSFQKSG 131 + L A++++ ++ + +G+ + L + Q+ RGFSFQ G Sbjct: 84 AR--ATHGLPVELVHASYTEAREVLAARGLTAIDGLLLDLGLSSDQLAWTHRGFSFQNDG 141 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMR + G +A+D+V Q + + L + GEE+ + R+A IV+ R+ AP TTQ Sbjct: 142 PLDMRFDTTQGETAADLVAQLDAEQLADLFYRYGEERFSRRVARRIVEERRLAPILTTQR 201 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 L++++++ + + I PATR FQALRI VN E+E L + L + LK GG V+SF Sbjct: 202 LATIVRRAIP-GRRGPIDPATRVFQALRIAVNRELEHLEEFLGGMAELLKPGGRAAVISF 260 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 HSLEDR VK F + + ITKK +V T E+VA N R+RSAK Sbjct: 261 HSLEDRKVKHAFRND-----------------PRWTVITKKPIVATPEEVAANPRARSAK 303 Query: 311 LRAGMR 316 LR R Sbjct: 304 LRVAQR 309 >gi|283783556|ref|YP_003374310.1| S-adenosyl-methyltransferase MraW [Gardnerella vaginalis 409-05] gi|298252636|ref|ZP_06976430.1| S-adenosylmethionine-dependent methyltransferase [Gardnerella vaginalis 5-1] gi|283442079|gb|ADB14545.1| S-adenosyl-methyltransferase MraW [Gardnerella vaginalis 409-05] gi|297533000|gb|EFH71884.1| S-adenosylmethionine-dependent methyltransferase [Gardnerella vaginalis 5-1] Length = 345 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 102/318 (32%), Positives = 165/318 (51%), Gaps = 11/318 (3%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIA 63 M+ A+ H PVLL+ + L+ P G +++D T G G++ +F K +I Sbjct: 1 MTDAMKDITAIHAPVLLQDCVDLVTPSLQHKGAIVVDCTLGLAGHATAFLKAAPFATLIG 60 Query: 64 LDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQDYVPDKGVDGVVF---DLGVSSMQI 118 +DRD A+S + MR +F A F ++ + + + +D + DLG+SS+QI Sbjct: 61 IDRDSEALSLATQRMRSEGLENRFIPAHAAFDEIDEVLQENSIDRIDAAFMDLGLSSLQI 120 Query: 119 DCGDRGFSFQKSGPLDMRMSCSGISASDVVNQ-ANVKDLTRILGILGEEKQASRIAHAIV 177 D DRGFS+ LDMRM + + + + + ++LTRI GEE+ AS IA IV Sbjct: 121 DETDRGFSYSHDTALDMRMDTTQATTAATILATYDSRELTRIFREYGEERFASPIARRIV 180 Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 + R + P T+ L SL+ + + +PA R FQALRI VN E+++L++ L Sbjct: 181 EVRATEPIATSGQLVSLVDSVIPKAHRATGNPAKRVFQALRIEVNGELDKLSRTLPKIAL 240 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297 L+ G L+V S+HSLED VK+F + + + F+++T+ + ++ Sbjct: 241 HLREHGRLVVESYHSLEDTAVKRFMNQGLTVDVPANMPVIPDDAQPFFKALTRGAMKASK 300 Query: 298 EDVAFNRRSRSAKLRAGM 315 E++ N RS S +LRA Sbjct: 301 EEIVHNTRSSSVRLRAVE 318 >gi|45657732|ref|YP_001818.1| S-adenosyl-methyltransferase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|88911699|sp|P62472|RSMH_LEPIC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|45600972|gb|AAS70455.1| S-adenosyl-methyltransferase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 334 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 111/330 (33%), Positives = 171/330 (51%), Gaps = 29/330 (8%) Query: 3 SKSCKTMSSAIHHTIGD--HVPVLLEKVI----ALLNPAPGKVILDATFGAGGYSRSFCK 56 C+T++ + T + H V ++++ + LD T G GG+S F K Sbjct: 2 ESPCRTITLEKNGTSLEPVHYSVQGKEILQIFKENFQKEDPVLFLDGTAGEGGHSFLFLK 61 Query: 57 MGS--NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL-QDYVPDKGVD----GVVF 109 +I DRDP +S + D+ E+ Q FS++ Q + G+D G++ Sbjct: 62 EFPNSRIILCDRDPIMLSRALTRLSDFSERVVSIQTNFSEINQKLLTSYGIDQTPQGILL 121 Query: 110 DLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQ 168 DLG+S+ + RGFSF++S PLDMR++ SG SA +++N L I GEE+ Sbjct: 122 DLGISTFHLFHSGRGFSFRESEPLDMRLNPNSGQSAEEILNIYPKDRLMNIFYTYGEERW 181 Query: 169 ASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEE 227 + +IA IV+ R+ TT +L++L+ K + HPATR FQALRI VN E+ Sbjct: 182 SKKIAEVIVETRKQNSISTTFELANLVSKIIPRKFWPPGRHPATRIFQALRIEVNQELAH 241 Query: 228 LAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS 287 + GL+ L+ GG++ V+SFHSLEDR+VK F + + F+ Sbjct: 242 IENGLKLLLDLLRLGGVIQVISFHSLEDRIVKNSFRDYAKQ--------------NGFEL 287 Query: 288 ITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 +TKK ++P+QE++ N SRSAKLR +T Sbjct: 288 LTKKPILPSQEEIDENPASRSAKLRILRKT 317 >gi|331091351|ref|ZP_08340191.1| ribosomal RNA small subunit methyltransferase H 1 [Lachnospiraceae bacterium 2_1_46FAA] gi|330404512|gb|EGG84056.1| ribosomal RNA small subunit methyltransferase H 1 [Lachnospiraceae bacterium 2_1_46FAA] Length = 349 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 94/315 (29%), Positives = 158/315 (50%), Gaps = 28/315 (8%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 +G H+ + +++++ L PG+ LDAT G GG++ K ++ ALD D + Sbjct: 48 PVGMHISICVKEILDFLQIQPGQRGLDATLGYGGHTLEMLKCLKGEGHLYALDVDTVESA 107 Query: 73 CGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQ 128 +E ++ E ++ F + + G D V+ DLGVSSMQID +RGF+++ Sbjct: 108 KTKERLQKLGYGEEILTIKNINFRDIDKVCEEAGKFDFVLADLGVSSMQIDNPERGFTYK 167 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI-VKRRQSAPFQ 186 K GPLD+R++ G+SA++ + + +++L + +E A IA I K R+ Sbjct: 168 KEGPLDLRLNQKKGVSAAERLKEVTMEELEGMFVENADEPYAHEIAEKIFAKLRRGEAID 227 Query: 187 TTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 TT L +I++ + F K R+FQALRI VN+E E L + + LK Sbjct: 228 TTTKLQQIIEEALKFIPEKERKEAVKKSCQRTFQALRIDVNSEFEVLYEFMEKLPNVLKE 287 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 GG + +++FHS EDR+VK+ F V+ I V+ P+ E+ Sbjct: 288 GGRVAILTFHSGEDRIVKRAFKELK--------------RAGVYSDIANDVIRPSAEECN 333 Query: 302 FNRRSRSAKLRAGMR 316 +N R++S K+R ++ Sbjct: 334 YNSRAKSTKMRWAIK 348 >gi|32475279|ref|NP_868273.1| methyltransferase [Rhodopirellula baltica SH 1] gi|42559448|sp|Q7UFX8|RSMH_RHOBA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|32445820|emb|CAD78551.1| conserved hypothetical protein-putative methyltransferase [Rhodopirellula baltica SH 1] Length = 325 Score = 287 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 104/317 (32%), Positives = 163/317 (51%), Gaps = 35/317 (11%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---------SNVIALDRDPF 69 +HV V+ +++ + I+D T+G GG++R ++ VIA+DRDP Sbjct: 27 EHVSVMPNEIVQWVREINPTTIIDGTYGGGGHTRLLAEVLADAGSDSDTPRVIAIDRDPA 86 Query: 70 AVSCGQE--TMRDYKEQFSLFQATFS---QLQDYVPDKGVDGVVFDLGVSSMQIDCGDRG 124 V ++ ++D + LF ++ + D + D +V DLG+SS Q+ +RG Sbjct: 87 VVRRDEQKSWIKD-DPRIELFLGSYESSPKALDALDLTHADALVLDLGLSSDQLADRNRG 145 Query: 125 FSFQ-KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV-KRRQ 181 F+F LD+R +G+ A + Q + K++ + GEE+ + RIA I + R+ Sbjct: 146 FTFTIDDAELDLRFDPENGVPAHRWLQQHSEKEIADAIYRFGEERFSRRIAKQIFLRARE 205 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 P +L + ++ V S+N+ IHPATR+FQALRI VN+E+ L + L+SA + Sbjct: 206 RNPVTKVGELVEICRRCVPRSRNHDIHPATRTFQALRIAVNDELGGLTRTLQSAPDWIAP 265 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 GG + V+SFHSLEDR+VK F ++ +TKK + PT E+V Sbjct: 266 GGRVAVISFHSLEDRIVKNAFRED-----------------HRWEILTKKPLRPTDEEVQ 308 Query: 302 FNRRSRSAKLRAGMRTV 318 N RSRSAKLR R Sbjct: 309 ANPRSRSAKLRVAKRVE 325 >gi|115444103|ref|NP_001045831.1| Os02g0137600 [Oryza sativa Japonica Group] gi|42409129|dbj|BAD10379.1| putative methyltransferase [Oryza sativa Japonica Group] gi|42409260|dbj|BAD10523.1| putative methyltransferase [Oryza sativa Japonica Group] gi|113535362|dbj|BAF07745.1| Os02g0137600 [Oryza sativa Japonica Group] gi|125538002|gb|EAY84397.1| hypothetical protein OsI_05773 [Oryza sativa Indica Group] Length = 436 Score = 287 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 108/349 (30%), Positives = 158/349 (45%), Gaps = 47/349 (13%) Query: 15 HTIGDHVPVLLEKVIALLN-PAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFA 70 H+ +HVPV+L +V+A P P + +D T GA G+S + + + I +D DP A Sbjct: 87 HSHAEHVPVMLGEVLAAFRRPLPLRSFVDCTLGAAGHSLAMMEAHPEMELYIGMDVDPSA 146 Query: 71 VSCGQETMRDYKE----------------QFSLFQATFSQLQDYVPDK---------GVD 105 + G+ + + + F ++ + GVD Sbjct: 147 LEIGRSRIEAFLANRETNGDDEDASQGTLRAYTHAKNFKYIKHVLGSVDENIAVGTSGVD 206 Query: 106 GVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILG 164 G++ DLG+SSMQ++ DRGFS + GPLDMRM + A D++N ++ RIL G Sbjct: 207 GILIDLGMSSMQVNRSDRGFSVLQDGPLDMRMDPKATLKAEDILNSWPDLEVGRILRDYG 266 Query: 165 EEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV--YFSKNNRIHPATRSFQALRIFVN 222 EE + IVK R +T +L LIQ+T + I ATR FQALRI VN Sbjct: 267 EESNWQSLQKRIVKARAMGGLHSTGELVKLIQRTCTSSGGRQGWIKTATRVFQALRIAVN 326 Query: 223 NEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVM------------ 270 +E+ L L + L G L V+SFHSLEDR+VK+ F + Sbjct: 327 DELRTLEDALHACFDCLATDGRLAVISFHSLEDRIVKQTFLELIHEDEIDDDEDDLVSAD 386 Query: 271 ---AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 +TK+ + P+QE+ N+R RSAKLR + Sbjct: 387 IDSEDEPWFKQRVQGKNGTILTKRPISPSQEEEELNQRCRSAKLRVIQK 435 >gi|319936250|ref|ZP_08010669.1| S-adenosyl-methyltransferase MraW [Coprobacillus sp. 29_1] gi|319808682|gb|EFW05224.1| S-adenosyl-methyltransferase MraW [Coprobacillus sp. 29_1] Length = 346 Score = 287 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 97/326 (29%), Positives = 164/326 (50%), Gaps = 28/326 (8%) Query: 5 SCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNV 61 + + + +G H+ +++ +++ L+ G++ LD T G GG++ + ++ Sbjct: 34 TIEKVIKKGSTPVGMHLSIMVNEILEFLDIQEGQIGLDCTLGYGGHTLKMLECLNHTGHM 93 Query: 62 IALDRDPFAVSCGQETM--RDYKEQF-SLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQ 117 ALD DP +E + + Y E+ ++ Q F + + G D V+ DLGVSSMQ Sbjct: 94 YALDIDPIESVKTKERLFNKGYGEELLTIKQCNFKDIDYVSKEVGLFDFVLADLGVSSMQ 153 Query: 118 IDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 ID +RGFS++K GPLD+R++ GI AS + + N L ++ +E A IA I Sbjct: 154 IDNPERGFSYKKEGPLDLRLNPEKGIPASQKLQELNKTQLEQLFIDNSDEPYAKEIAKNI 213 Query: 177 VKRRQSAP-FQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQ 230 ++ +TT DL +I+K++ F K + A R FQALRI VNNE + L + Sbjct: 214 DSFLKTGRLIETTTDLYKIIEKSLSFIPVNERKESIKKSAARVFQALRIEVNNEFDVLIE 273 Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK 290 + LK+GG + +++FHS EDR+VKK F + + Sbjct: 274 FMEKLPNILKSGGRVAILTFHSGEDRIVKKAFKEMKNLGIYSDAA--------------R 319 Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMR 316 V+ P++E+ N R++S K+R ++ Sbjct: 320 NVIRPSKEECHMNSRAKSTKMRWAIK 345 >gi|258614830|ref|ZP_05712600.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium DO] Length = 234 Score = 287 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 86/230 (37%), Positives = 137/230 (59%), Gaps = 5/230 (2%) Query: 94 QLQDYVPDK--GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQ 150 +L++ + + VDG+++DLGVSS Q+D +RGFS+ + PLDMRM S +SA V+N+ Sbjct: 1 ELEERLSEHVDKVDGILYDLGVSSPQLDEAERGFSYHQDAPLDMRMDQSAPLSAYHVINE 60 Query: 151 ANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVY-FSKNNRIHP 209 + +L +I GEEK + +IA I + R++ P QTT +L +I++ + ++ HP Sbjct: 61 YSYHELVKIFFRYGEEKFSKQIAREIERVRKTKPIQTTGELVEIIKQVIPAPARRKGGHP 120 Query: 210 ATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSG-K 268 A R FQA+RI VN+E+ L A + LK G + V++FHSLEDR+VK F S + Sbjct: 121 AKRIFQAVRIAVNDELGAEEASLEQAIRLLKVNGRISVITFHSLEDRIVKSMFKEYSTVQ 180 Query: 269 VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318 + + + + IT+K ++P++E++ N RSRSAKLR + Sbjct: 181 DLPPGLPVIPDEFQPELKVITRKPILPSEEELTENNRSRSAKLRIAEKIR 230 >gi|94264627|ref|ZP_01288410.1| methyltransferase [delta proteobacterium MLMS-1] gi|93454922|gb|EAT05163.1| methyltransferase [delta proteobacterium MLMS-1] Length = 301 Score = 287 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 104/323 (32%), Positives = 156/323 (48%), Gaps = 31/323 (9%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65 M +AI H PVLLE+V+ L PA G +D G GG++ + ++ D Sbjct: 1 MEAAI------HQPVLLEEVLHWLAPAAGGTYVDGNLGLGGHAAAILAASAPDGRLLGFD 54 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSM---QIDCGD 122 D A+ + + + + + FS+L+ + + + + L + Q+ G Sbjct: 55 WDQQALEQARRKLAPWGSRVITVRRNFSELEAVLAELAISKIDGLLLDLGLSSLQLAQGG 114 Query: 123 RGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSFQ PLDMRM G SA++++++ + +L I GEE+QA IA +V RQ Sbjct: 115 RGFSFQADEPLDMRMDQRGGESAAEMLHRLSAAELADIFYYYGEERQARPIAARVVAERQ 174 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 ++ L+ L+ + V + R IH ATR FQALRI VN E+E L + L A L Sbjct: 175 RGMISSSGQLAELVAQAVPRRFHPRNIHVATRVFQALRIAVNRELENLEKILAVAPPLLT 234 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300 AG V+SFHSLEDRLVK+ FA + +T K V ++++ Sbjct: 235 AGARFCVISFHSLEDRLVKQAFAGD-----------------RRLRVLTGKPVTAGEQEL 277 Query: 301 AFNRRSRSAKLRAGMRTVERSIE 323 N R+RSA+LR + E Sbjct: 278 GSNPRARSARLRVAEKVAVAGGE 300 >gi|24214745|ref|NP_712226.1| S-adenosyl-methyltransferase [Leptospira interrogans serovar Lai str. 56601] gi|42559478|sp|Q8F4J6|RSMH_LEPIN RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|24195744|gb|AAN49244.1| S-adenosyl-methyltransferase [Leptospira interrogans serovar Lai str. 56601] Length = 334 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 111/330 (33%), Positives = 170/330 (51%), Gaps = 29/330 (8%) Query: 3 SKSCKTMSSAIHHTIGD--HVPVLLEKVI----ALLNPAPGKVILDATFGAGGYSRSFCK 56 C+T++ + T + H V ++++ + LD T G GG+S F K Sbjct: 2 ESPCRTITLEKNGTSLEPVHYSVQGKEILQIFKENFQKEDPVLFLDGTAGEGGHSFLFLK 61 Query: 57 MGS--NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL-QDYVPDKGVD----GVVF 109 +I DRDP +S + D+ E+ Q FS++ Q + G+D G++ Sbjct: 62 EFPNSRIILCDRDPIMLSRALTRLSDFSERVVSIQTNFSEINQKLLTSYGIDQTPQGILL 121 Query: 110 DLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQ 168 DLG+S+ + RGFSF++S PLDMR++ SG SA +++N L I GEE+ Sbjct: 122 DLGISTFHLFHSGRGFSFRESEPLDMRLNPNSGQSAEEILNIYPKDRLMNIFYTYGEERW 181 Query: 169 ASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEE 227 + +IA IV+ R+ TT +L++L+ K + HPATR FQALRI VN E+ Sbjct: 182 SKKIAEVIVETRKQNSISTTFELANLVSKIIPRKFWPPGRHPATRIFQALRIEVNQELAH 241 Query: 228 LAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS 287 + GL+ L+ GG++ V+SFHSLEDR+VK F + + F+ Sbjct: 242 IENGLKLLLDLLRLGGVIQVISFHSLEDRIVKNSFRDYAKQ--------------NGFEL 287 Query: 288 ITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 +TKK + P+QE++ N SRSAKLR +T Sbjct: 288 LTKKPIFPSQEEIDENPASRSAKLRILRKT 317 >gi|94266846|ref|ZP_01290506.1| methyltransferase [delta proteobacterium MLMS-1] gi|93452476|gb|EAT03075.1| methyltransferase [delta proteobacterium MLMS-1] Length = 301 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 104/323 (32%), Positives = 155/323 (47%), Gaps = 31/323 (9%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65 M +AI H PVLLE+V+ L PA G +D G GG++ + ++ D Sbjct: 1 MEAAI------HQPVLLEEVLHWLAPAAGGTYVDGNLGLGGHAAAILAASAPDGRLLGFD 54 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSM---QIDCGD 122 D A+ + + + + + FS+L+ + + + + L + Q+ G Sbjct: 55 WDQQALEQARRKLAPWGSRVITVRRNFSELEAVLAELAISKIDGLLLDLGLSSLQLAQGG 114 Query: 123 RGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSFQ PLDMRM G SA++++++ + +L I GEE+QA IA +V RQ Sbjct: 115 RGFSFQADEPLDMRMDQRGKESAAELLHRLSAAELADIFYYYGEERQARPIAARVVAERQ 174 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 ++ L+ L+ + V + R IH ATR FQALRI VN E+E L + L A L Sbjct: 175 RGMISSSGQLAELVAQAVPRRFHPRNIHVATRVFQALRIAVNRELENLEKILAVAPPLLT 234 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300 AG V+SFHSLEDRLVK+ FA + +T K V +++ Sbjct: 235 AGARFCVISFHSLEDRLVKQAFAGD-----------------RRLRVLTGKPVTAGDQEL 277 Query: 301 AFNRRSRSAKLRAGMRTVERSIE 323 N R+RSA+LR + E Sbjct: 278 GSNPRARSARLRVAEKVAVAGGE 300 >gi|225028745|ref|ZP_03717937.1| hypothetical protein EUBHAL_03024 [Eubacterium hallii DSM 3353] gi|224953936|gb|EEG35145.1| hypothetical protein EUBHAL_03024 [Eubacterium hallii DSM 3353] Length = 352 Score = 286 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 98/332 (29%), Positives = 163/332 (49%), Gaps = 32/332 (9%) Query: 3 SKSCKTMSSAI---HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG- 58 K T+ I G H+ + +++++ L PG+ LD T G GG++R + Sbjct: 35 EKYKDTIEKVIRKGSTPAGMHISICVQEILDFLQIQPGQKGLDCTLGYGGHTRKMLECLQ 94 Query: 59 --SNVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLG 112 ++ LD DP + + +R + ++ Q F + + G D V+ DLG Sbjct: 95 GEGHIYGLDVDPIEIVKTTDRLRKAGYGEDILTIIQQNFRNIDLVAEEHGLFDFVLADLG 154 Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASR 171 VSSMQID +RGFS++ GPLD+R++ GISA++ + + ++ +L +E A + Sbjct: 155 VSSMQIDNPERGFSYKVEGPLDLRLNPDKGISAAERLRELTRDEIEGMLRENADEPYAEQ 214 Query: 172 IAHAIVK-RRQSAPFQTTQDLSSLIQKTVYFSKNNR------IHPATRSFQALRIFVNNE 224 IA I+K RQ TT L +I++ + F +++ R+FQALRI VN+E Sbjct: 215 IAKEIMKTFRQGEQIDTTGQLKEVIERALVFLPDDKEKKDTIKKTCQRTFQALRIDVNSE 274 Query: 225 IEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV 284 E L + L L GG + +++FHS EDRLVKK + + Sbjct: 275 FEVLEEFLEKLPHILAPGGRVAILTFHSGEDRLVKKIWKR--------------QQKEGL 320 Query: 285 FQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 + + K V+ P++E+ N R+RS K+R ++ Sbjct: 321 WSEVAKNVIRPSKEECHRNGRARSTKMRWAIK 352 >gi|15238896|ref|NP_196652.1| mraW methylase family protein [Arabidopsis thaliana] gi|8979725|emb|CAB96846.1| putative protein [Arabidopsis thaliana] gi|16604434|gb|AAL24223.1| AT5g10910/T30N20_180 [Arabidopsis thaliana] gi|28416479|gb|AAO42770.1| At5g10910/T30N20_180 [Arabidopsis thaliana] gi|332004225|gb|AED91608.1| mraW methylase family protein [Arabidopsis thaliana] Length = 434 Score = 286 bits (732), Expect = 4e-75, Method: Composition-based stats. Identities = 112/339 (33%), Positives = 169/339 (49%), Gaps = 42/339 (12%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCGQE 76 HVPV+L +V+ + + + +D T GA G+S S + S + + +D DP A G Sbjct: 95 HVPVMLGEVLDIFSSVRLRSFVDCTLGAAGHSSSIIQSHSELKNFVGMDVDPVARKLGHF 154 Query: 77 TMRDYK----------EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126 + + F ++ + Q + D GVDG++ DLG+SSMQ++ +RGFS Sbjct: 155 HIDSLMHPTLKASIVLKNFKYIKSVIADTQPELLDVGVDGILMDLGMSSMQVNNPERGFS 214 Query: 127 FQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 + GPLDMRM ++A D+VN +L R+L GEE + + IVK R + Sbjct: 215 VLQEGPLDMRMDPQATLTAEDIVNSWPESELGRVLRDYGEESNWYLLQNRIVKARLNGGL 274 Query: 186 QTTQDLSSLIQKTVYFSKNNR---IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 +T +L LI+ T S+ R I ATR FQ LRI VN+E++ L L S+ L G Sbjct: 275 HSTGELVDLIRGTSPASRGGRQGWIKTATRVFQGLRIAVNDELKTLQNSLYSSFDVLAPG 334 Query: 243 GLLIVVSFHSLEDRLVKKFF--------ASRSGKVMAVRHM-----------------IP 277 G L V+SFHSLEDR+VK+ F +G+ +V+ I Sbjct: 335 GRLAVISFHSLEDRVVKQTFLDILGFQREEINGEGSSVKPERQIEERVEKELKEKEEWIK 394 Query: 278 SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 + +TK+ + P++E+ NRR+RSAKLR + Sbjct: 395 QTVIASKGVILTKRPITPSEEEERLNRRARSAKLRVIQK 433 >gi|116072034|ref|ZP_01469302.1| methyltransferase [Synechococcus sp. BL107] gi|116065657|gb|EAU71415.1| methyltransferase [Synechococcus sp. BL107] Length = 285 Score = 286 bits (732), Expect = 4e-75, Method: Composition-based stats. Identities = 103/302 (34%), Positives = 154/302 (50%), Gaps = 28/302 (9%) Query: 24 LLEKVIALLN--PAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMR 79 + + V+A P V++DAT G GG+S + ++I LD+DP A + E + Sbjct: 1 MADAVVAGAEHLPHQNGVLIDATLGGGGHSALLLERFPGFHLIGLDQDPTARAAAAERLA 60 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 + ++ + F+ Y P V V+ DLGVSS Q+D +RGFSF+ GPLDMRM+ Sbjct: 61 AFGDRVEILATNFA---SYTPPAPVLMVLADLGVSSPQLDVAERGFSFRLDGPLDMRMNP 117 Query: 140 --SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTTQDLSSLIQ 196 +A++++++ L ++ GEE+ + RIA I P++ T L+ + Sbjct: 118 GSDAETAAELIDRLEENALADLIYGYGEERLSRRIARRIKADLAAQGPYEGTAALAYAVA 177 Query: 197 KTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + RIHPATR+FQALRI VN+E+ L + L A L+ GG++ V+SFHSLED Sbjct: 178 GCYPPKARRGRIHPATRTFQALRIAVNDELAVLDRLLDQAPDWLEPGGVMGVISFHSLED 237 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 R VK F + IT+K V T+++ N RSRSAK R Sbjct: 238 RRVKTAFLQDE-----------------RLERITRKPTVATEDEQDSNPRSRSAKWRLAR 280 Query: 316 RT 317 R Sbjct: 281 RV 282 >gi|167756448|ref|ZP_02428575.1| hypothetical protein CLORAM_01981 [Clostridium ramosum DSM 1402] gi|167703856|gb|EDS18435.1| hypothetical protein CLORAM_01981 [Clostridium ramosum DSM 1402] Length = 362 Score = 286 bits (732), Expect = 4e-75, Method: Composition-based stats. Identities = 92/326 (28%), Positives = 161/326 (49%), Gaps = 28/326 (8%) Query: 5 SCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNV 61 + + + +G H+ +++++++ L+ G++ LD T G GG++ + ++ Sbjct: 50 TIEKVIKKGSTPVGMHLSIMVDEILEFLDIQEGQIGLDCTLGYGGHTLKMLECLNYTGHM 109 Query: 62 IALDRDPFAVSCGQETM--RDYK-EQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQ 117 ALD DP +E + + Y + ++ F + + G D V+ DLGVSSMQ Sbjct: 110 YALDIDPIESIKTKERLLGKGYGEDVLTIKNCNFKDIDIISKEVGLFDFVLADLGVSSMQ 169 Query: 118 IDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 ID +RGFS++K GPLD+R++ G+ AS + + N L ++ +E A IA I Sbjct: 170 IDNPERGFSYKKEGPLDLRLNPQKGVPASIKLQELNRDQLEQLFIENSDEPYAKEIARNI 229 Query: 177 VKRRQSAP-FQTTQDLSSLIQKT---VYFSKNNRI--HPATRSFQALRIFVNNEIEELAQ 230 +S TT L +I+K+ + ++ I A R FQALRI VN E + L + Sbjct: 230 DSYLKSGQLITTTTQLYKIIEKSLSSIPVTERKDIVKKSAARVFQALRIEVNREFDVLIE 289 Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK 290 + LK GG + +++FHS EDR+VKK F + + + + Sbjct: 290 FMDKLPTILKPGGRVAILTFHSGEDRIVKKAFKEMKNLGI--------------YSDVAR 335 Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMR 316 V+ P++E+ N R++S K+R ++ Sbjct: 336 NVIRPSKEECHMNSRAKSTKMRWAIK 361 >gi|262195180|ref|YP_003266389.1| S-adenosyl-methyltransferase MraW [Haliangium ochraceum DSM 14365] gi|262078527|gb|ACY14496.1| S-adenosyl-methyltransferase MraW [Haliangium ochraceum DSM 14365] Length = 319 Score = 285 bits (730), Expect = 6e-75, Method: Composition-based stats. Identities = 106/323 (32%), Positives = 168/323 (52%), Gaps = 35/323 (10%) Query: 20 HVPVLLEKVIALLNPAPGKVILD---------------ATFGAGGYSRSFCKMGSNVIAL 64 H+PVL E+V+A ++P PG V D A + + Sbjct: 9 HLPVLKEEVLAHMSPRPGGVYCDGTLGGGGHAGAVLARA------------NPDGRLYGI 56 Query: 65 DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCG 121 DRD A++ Q + D+ E+ + T+ + + + G +DG++ D+G SS Q D Sbjct: 57 DRDATALAAAQRALADFGERVQFLRGTYGYADELLAEAGAPPLDGILLDIGPSSPQFDRA 116 Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF + GP+DMRM S G +A D++ + +L IL GEE+ + RIA I Sbjct: 117 ERGFSFLRPGPIDMRMDQSSGETALDLMRRLGPGELADILWSFGEERFSKRIAARIKDAV 176 Query: 181 QSAPFQTTQDLSSLIQKTVYF--SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 + +TT DL++L++ + + + HPAT++FQALRI VN E+++LA+ LR Sbjct: 177 RDHRLETTTDLAALVEDAIPASVRRQMKTHPATKTFQALRIAVNGELDQLARFLRVFPPL 236 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFAS--RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296 L GG +++SFHSLEDRLVK+ F S ++ V +T+K V + Sbjct: 237 LAPGGRCVIISFHSLEDRLVKRAFRDLAWSSRLPPDLARAAGERIEPVCVPVTRKAVFAS 296 Query: 297 QEDVAFNRRSRSAKLRAGMRTVE 319 ++++A N R+RSA+LRA + Sbjct: 297 EDEIASNPRARSARLRACEKVAA 319 >gi|294660427|ref|NP_853182.2| S-adenosyl-L-methionine-dependent methyltransferase mraW [Mycoplasma gallisepticum str. R(low)] gi|298286859|sp|Q7NB79|RSMH_MYCGA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|284812086|gb|AAP56750.2| S-adenosyl-L-methionine-dependent methyltransferase mraW [Mycoplasma gallisepticum str. R(low)] gi|284930664|gb|ADC30603.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Mycoplasma gallisepticum str. R(high)] Length = 313 Score = 285 bits (729), Expect = 8e-75, Method: Composition-based stats. Identities = 102/306 (33%), Positives = 153/306 (50%), Gaps = 11/306 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76 H PVLL++VI L + LD T G GG+S + +I D+D A++ + Sbjct: 9 HYPVLLKEVIENLITTKDGIYLDLTIGFGGHSYNIIKILDQKARLIGFDQDLKAIAHCNQ 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ SL F L+ ++ +DG + DLGVSS Q+D DRGFS+ G L Sbjct: 69 LFSEF-NNVSLINDNFVNLKKHLQLMQIDNIDGCLIDLGVSSYQLDQADRGFSYHSLGRL 127 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + + A+ ++ + V +L +I+ GE K R+ A+ K + T ++ Sbjct: 128 DMRMDQNKAVDATKLIQNSTVSELVKIMKNYGEIKDPYRVVVALKKAFEKKELN-TLEVV 186 Query: 193 SLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 LI+K V ++ HPA R FQALRI VNNE+E L + L L GG + +++FH Sbjct: 187 ELIKKHVNKAELYANKHPARRYFQALRIAVNNELEVLEKLLSYLPSYLNKGGKIAIITFH 246 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLE+++VKK F + I + K + PTQ ++ NRRSRSAKL Sbjct: 247 SLEEKIVKKVFRHLASISSLNNLPINNELLKKYHNHFNKG-LSPTQSELETNRRSRSAKL 305 Query: 312 RAGMRT 317 + Sbjct: 306 FVLEKI 311 >gi|260881478|ref|ZP_05404498.2| S-adenosyl-methyltransferase MraW [Mitsuokella multacida DSM 20544] gi|260848533|gb|EEX68540.1| S-adenosyl-methyltransferase MraW [Mitsuokella multacida DSM 20544] Length = 369 Score = 285 bits (729), Expect = 8e-75, Method: Composition-based stats. Identities = 94/335 (28%), Positives = 169/335 (50%), Gaps = 35/335 (10%) Query: 3 SKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---S 59 + + + + G H+P+++++++ +L PG+ DAT G GG++ + + Sbjct: 47 GEEIAHVRAKGNTPAGTHIPIMVKEILEVLAIKPGERGFDATLGYGGHTLAMLEKLEGKG 106 Query: 60 NVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSS 115 ++ D DP + +R + + Q F ++ + G D V+ DLGVSS Sbjct: 107 HLYGGDVDPIESEKTEARIRAKGFGPDIWERRQMNFCEIDKLAEEVGPFDFVLADLGVSS 166 Query: 116 MQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAH 174 MQID +RGF+++ GPLD+R++ GISA+D + Q + ++L ++ +E A IA Sbjct: 167 MQIDNPERGFTYKSDGPLDLRLNPQAGISAADRLRQLDYEELVGMMQENADEPYAEAIAR 226 Query: 175 AIVKRRQSAPFQTTQDLSSLIQKT-------------VYFSKNNRIHPATRSFQALRIFV 221 IV+ + P +TT++L ++I+ + ++ + R FQALRI V Sbjct: 227 QIVRAEKHRPIRTTRELYAVIEAALEKVHLPRDAAGKIPDRRDVIRKSSARVFQALRIDV 286 Query: 222 NNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH 281 N+E E L + + AL GG + +++FHS EDR+VKK F + Sbjct: 287 NHEYEVLYEFMEKLPYALAPGGRVAILTFHSGEDRIVKKAFKAF--------------HQ 332 Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 +++ I ++V+ P++E+ N R+ S KLR +R Sbjct: 333 QGIYRDIAREVIRPSREECYENSRAHSTKLRWAIR 367 >gi|67969111|dbj|BAE00910.1| unnamed protein product [Macaca fascicularis] Length = 450 Score = 285 bits (729), Expect = 8e-75, Method: Composition-based stats. Identities = 116/356 (32%), Positives = 174/356 (48%), Gaps = 74/356 (20%) Query: 20 HVPVLLEKVIALLNPAPGKV---------------------------------ILDATFG 46 H+PV++++V+ L+P G++ LD TFG Sbjct: 72 HIPVMVDEVVHCLSPQKGQISFMCIVLFAYPNNLVMWTRMVHLHTRKLRLREIFLDMTFG 131 Query: 47 AGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV 104 +GG++++ + S+ + ALDRDP A + + Y ++ FSQ + + GV Sbjct: 132 SGGHTKAILQKESDIVLYALDRDPTAYALAEHLSELYPKKIRAVLGQFSQAEALLTKAGV 191 Query: 105 -----DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS----CSGISASDVVNQANVKD 155 DGV+ DLG SSMQ+D +RGFS +K GPLDMRM +A+DVVN + Sbjct: 192 QPGTFDGVLMDLGCSSMQLDTPERGFSLRKDGPLDMRMDGGRYPDMPTAADVVNALDQPA 251 Query: 156 LTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSK--------NNRI 207 L IL GEEK A +IA AIV+ R P TQ L+S++ S Sbjct: 252 LASILRTYGEEKHARKIASAIVQARSIYPITRTQQLASIVAGAFPPSAIYARKDLLQRST 311 Query: 208 HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF----- 262 H AT++FQALRIFVNNE+ EL GL++A+K L+ GG L+ +SFHSLEDR++K+F Sbjct: 312 HIATKTFQALRIFVNNELNELYTGLKTAQKFLRPGGRLVALSFHSLEDRIIKRFLLGISM 371 Query: 263 --------------ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE---DVA 301 S+ G + P +++ I KK + +++ ++ Sbjct: 372 TERFNLSVRQQVMKTSQLGSGHENTEEVSMRRAPLMWELIHKKALFKSEQSYREIR 427 >gi|283797253|ref|ZP_06346406.1| S-adenosyl-methyltransferase MraW [Clostridium sp. M62/1] gi|291075103|gb|EFE12467.1| S-adenosyl-methyltransferase MraW [Clostridium sp. M62/1] gi|295092386|emb|CBK78493.1| S-adenosyl-methyltransferase MraW [Clostridium cf. saccharolyticum K10] Length = 383 Score = 285 bits (729), Expect = 8e-75, Method: Composition-based stats. Identities = 96/331 (29%), Positives = 162/331 (48%), Gaps = 31/331 (9%) Query: 3 SKSCKTMSSAIHH---TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG- 58 K T+ I G H+ + +++++ + PG+V LDAT G GG++R K Sbjct: 66 EKYRDTVEKVIQKGGTPAGMHISICVKEILDFFDIRPGQVGLDATLGYGGHTREMLKKLQ 125 Query: 59 --SNVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLG 112 ++ LD DP ++ + D + ++ F+ + + G D ++ DLG Sbjct: 126 GQGHIYGLDVDPIESEKTKKRLADAGFGPDILTVKLMNFADIDKVAEEAGPFDFILADLG 185 Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASR 171 VSSMQID +RGF+++ GPLD+RM + G +A++ + + ++ +L +E A Sbjct: 186 VSSMQIDNPERGFTYKYEGPLDLRMDPTRGETAAERLKGMDREEFCGMLMENSDEPYAEE 245 Query: 172 IAHAIVKR-RQSAPFQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEI 225 I+H + R ++ TT L +++ + F K R+FQALRI VN+E Sbjct: 246 ISHTVFSRLKRGGRIDTTTQLREAVEEALSFLPEKERKEAVKKSCARTFQALRIDVNSEF 305 Query: 226 EELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF 285 E L L ALK+GG +++FHS EDRLVKK F ++ Sbjct: 306 EVLYAFLEKLPSALKSGGKAAILTFHSGEDRLVKKSFREYK--------------RAGLY 351 Query: 286 QSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 I ++V+ P+ E+ A N R++S K+R ++ Sbjct: 352 SEIAQEVIRPSAEECARNSRAKSTKMRWAVK 382 >gi|307179074|gb|EFN67546.1| Putative S-adenosyl-L-methionine-dependent methyltransferase CG14683 [Camponotus floridanus] Length = 427 Score = 285 bits (729), Expect = 8e-75, Method: Composition-based stats. Identities = 118/324 (36%), Positives = 182/324 (56%), Gaps = 28/324 (8%) Query: 22 PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQETMR 79 PV+ ++V+ ++ +PGK +D TFGAGG++ F + S++ ALDRDP A Q+ + Sbjct: 103 PVMAQEVLTYMDLSPGKTYVDMTFGAGGHTTKFLEYLSDIKIFALDRDPVAYKYAQQLSQ 162 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 Y + TFS+L + + DG +FD G SSMQI+ +RGFS K+GPLD Sbjct: 163 KYPGKVIPLLGTFSELPQLLKQYNIKRNSIDGFLFDFGCSSMQIEDANRGFSLLKNGPLD 222 Query: 135 MRMS--CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQTTQDL 191 MRM+ +A+DV+++A +DL RI+ + G+EK+A +IA AI++ R +TTQ+L Sbjct: 223 MRMNGCLKQPTAADVLDRATEEDLARIIKVYGQEKRAKKIARAIIEARYMFRKLETTQEL 282 Query: 192 SSLIQKTVYFSKNNR-----IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 L++ + H A ++FQALRIFVNNE+ E+ G+ A LK G LI Sbjct: 283 IQLVESVLDDEIRTDNLDKYSHSAVKTFQALRIFVNNELNEINYGILLANIYLKLSGRLI 342 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKV--------V 293 +SF+SLED ++K+ + +A + + V FQ +T+K + Sbjct: 343 TISFNSLEDTIIKRHLSGNITDNVANTVALKYANYGKVFNTNEFQILTEKPWKMMHKHVL 402 Query: 294 VPTQEDVAFNRRSRSAKLRAGMRT 317 PT E++ N +S+SAKLRA M+ Sbjct: 403 TPTSEEIEINPKSQSAKLRAIMKV 426 >gi|71893756|ref|YP_279202.1| putative S-adenosyl-methyltransferase [Mycoplasma hyopneumoniae J] gi|72080726|ref|YP_287784.1| S-adenosyl-methyltransferase [Mycoplasma hyopneumoniae 7448] gi|88909202|sp|Q4A7X8|RSMH_MYCH7 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|88909203|sp|Q4A9T0|RSMH_MYCHJ RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|71851883|gb|AAZ44491.1| putative S-adenosyl-methyltransferase [Mycoplasma hyopneumoniae J] gi|71913850|gb|AAZ53761.1| S-adenosyl-methyltransferase [Mycoplasma hyopneumoniae 7448] Length = 296 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 105/300 (35%), Positives = 154/300 (51%), Gaps = 16/300 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76 HVPVLLE++I L P +D T G GG+S + + ++ D+D A+ + Sbjct: 1 MHVPVLLEELILALEINPKGFYVDLTLGRGGHSLAILEKISNGKLVVFDKDQDALDQTRP 60 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + YK+ + + FS+ Y+ + G VDG + DLGVSS QID +RGFS+ K G L Sbjct: 61 KLLAYKQNIEIIWSDFSRFDFYLENLGIQFVDGFIIDLGVSSPQIDDPERGFSYSKDGNL 120 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S +SA V+N+ + L I G+ A IA AI+ R P +TT +L Sbjct: 121 DMRMDKSQKLSAFIVLNEYPYEKLVEIFFKYGQIPYAREIARAIINSR---PLKTTFELV 177 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +L++K + + + FQA+RI VNNE++ L + L K LK G + +++FHS Sbjct: 178 NLVKKVIPALVLVKKNFIKNVFQAVRIEVNNELDSLQKLLEKLPKFLKQGSKVAIITFHS 237 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VKK F K + KV P ++ N R++SAKLR Sbjct: 238 LEDRIVKKAFLDLIRKD-------KLEFFQKGLPKFSMKVFRPKANELKSNPRAKSAKLR 290 >gi|149920500|ref|ZP_01908968.1| methyltransferase [Plesiocystis pacifica SIR-1] gi|149818681|gb|EDM78126.1| methyltransferase [Plesiocystis pacifica SIR-1] Length = 331 Score = 284 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 115/320 (35%), Positives = 168/320 (52%), Gaps = 27/320 (8%) Query: 20 HVPVLLEKVIALLNPA----PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73 H VL E V+ L PA P ++D T GAGG++ + + V+ +DRDP A+ Sbjct: 5 HESVLAEAVVTALVPAIDSVPEGALVDVTCGAGGHTAALLARCTPNRVVLVDRDPAALEH 64 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + A F+ + GV ++ DLGVSS Q+D +RGFSF+ Sbjct: 65 ARRRLHGAACTVDFCHAPFADFAAELDRLGVGTVSALIADLGVSSHQLDTAERGFSFRAD 124 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM + G +A+ + V +L R+L GEE +A+RIA AI+ R TT+ Sbjct: 125 APLDMRMDPTRGETAAARLAAMTVDELVRVLRRYGEEAEAARIAPAILAARPQ----TTK 180 Query: 190 DLSSLIQKTVYFSKN----NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 L+ ++++ + RIHPATR+FQALRI VN E+++L + L L GG + Sbjct: 181 VLAEVVEQAMSARSRRALGKRIHPATRTFQALRILVNGELDQLDRLLEDGPARLAVGGRM 240 Query: 246 IVVSFHSLEDRLVKKFFAS--RSGKVMAVRHMIPSNAHPAVFQ-------SITKKVVVPT 296 V+SFHSLEDR VK+ FA R+ K+ A + + F+ I++K VV Sbjct: 241 GVISFHSLEDRPVKQRFAKLCRAPKLPASLPLTTAELEARGFRAHFGVPAEISRKGVVAD 300 Query: 297 QEDVAFNRRSRSAKLRAGMR 316 + + N RSRSA+LRA R Sbjct: 301 EAERERNPRSRSARLRAIER 320 >gi|149178739|ref|ZP_01857322.1| S-adenosyl-methyltransferase MraW [Planctomyces maris DSM 8797] gi|148842437|gb|EDL56817.1| S-adenosyl-methyltransferase MraW [Planctomyces maris DSM 8797] Length = 305 Score = 284 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 105/311 (33%), Positives = 167/311 (53%), Gaps = 31/311 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H+PVLL +VI L+ +PG +++D T GAGG+S K +I LDRD + + Sbjct: 13 HLPVLLREVITQLDLSPGLIVVDGTVGAGGHSEHILKKINNEGTLIGLDRDAMMLGFATQ 72 Query: 77 TMRD---YKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130 ++ + L Q+++++L + + VD V+ DLG+SS Q+ +RGF F+ + Sbjct: 73 KLKPESLPAGRCYLRQSSYAELPAVMEELQISSVDRVLLDLGLSSDQLSDDERGFGFESA 132 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 G LD+R G+ A ++ +L IL + GEE+ + RIA+ IVK+R++AP +T Sbjct: 133 GELDLRFDTRQGVPAWQLLESLPESELCEILEVYGEERFSQRIANQIVKQRKTAPVRTAA 192 Query: 190 DLSSLIQKTVYFS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRSA-EKALKAGGLLI 246 DL +Q+ + R +PATR FQALRI N E+E+L L + + L+ GG + Sbjct: 193 DLIKAVQQAIPGKALAAARKNPATRVFQALRIAANQELEQLETMLETVLPQVLQPGGRAV 252 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 ++SFHSLEDR+ + P +++T K +V TQ + N R Sbjct: 253 IISFHSLEDRMSSRRLK------------------PGDLKNLTAKPIVATQAEQRVNPRC 294 Query: 307 RSAKLRAGMRT 317 R+AKLR ++T Sbjct: 295 RTAKLRVAVKT 305 >gi|116626359|ref|YP_828515.1| S-adenosyl-methyltransferase MraW [Candidatus Solibacter usitatus Ellin6076] gi|122251651|sp|Q01Q40|RSMH_SOLUE RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|116229521|gb|ABJ88230.1| S-adenosyl-methyltransferase MraW [Candidatus Solibacter usitatus Ellin6076] Length = 286 Score = 284 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 112/303 (36%), Positives = 163/303 (53%), Gaps = 25/303 (8%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76 HVPV+ + I LL P V LDAT G GG+S + VIA DRD ++ + Sbjct: 1 MHVPVMPAEAIELLAIRPEGVYLDATAGLGGHSGLIARQLTTGTVIANDRDTRSLEMARA 60 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ ++ +F L D V G VDG++ DLGVS Q+ DRGFSF GPL Sbjct: 61 NTAEWSDRMCFHYGSFGSLSDAVSQAGFEKVDGLLADLGVSRYQLTAPDRGFSFMADGPL 120 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S +A+D+VN + K L ++ +GEE++A RIA A ++ P ++T L+ Sbjct: 121 DMRMDASIQTTAADLVNHTDEKTLADLIYQMGEERRARRIARA---IVRARPLRSTLHLA 177 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 ++++ V + R+HPAT++F ALR+ VN+E EL + L A LK+GG ++V+SF S Sbjct: 178 DVVERAVP--RTGRLHPATKTFMALRMAVNDEPGELRRLLEIAPGLLKSGGRMVVISFMS 235 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 +DR+VK+ F A +TK + P+ E+ N SRSAKLR Sbjct: 236 SDDRMVKEKFKELGQSKQAT--------------ILTKHPLQPSDEESFNNPASRSAKLR 281 Query: 313 AGM 315 A Sbjct: 282 ALE 284 >gi|124515896|gb|EAY57405.1| S-adenosyl-methyltransferase (MraW) [Leptospirillum rubarum] Length = 307 Score = 284 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 104/301 (34%), Positives = 159/301 (52%), Gaps = 21/301 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQ-ETM 78 H+PV+ ++V+ +LN PG+ +DAT G GG++R+ + G +VIA+DRDP A+ + E + Sbjct: 17 HLPVMTKEVLEVLNVHPGQWYVDATLGQGGHARAILEAGGSVIAIDRDPKAIEKARLELL 76 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVD--GVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + E+ L + + +++P VD GVV D G S Q G SF GPLDMR Sbjct: 77 PIFGERLRLTCMNHAGMGEFLPSMRVDISGVVLDSGWSMAQASENGAGLSFDAEGPLDMR 136 Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT-QDLSSL 194 M + +A D++ Q + ++L I GEE A I+ A+V+ R T ++L++ Sbjct: 137 MDPTLERTAMDILEQQSAEELAAIFSNFGEEPLALPISRALVQSRSRGRLPRTPKELAAF 196 Query: 195 IQKTVYFS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 + Y + +R HPATR F ALRI VN EI+ L +G+ L +G L V++FHS Sbjct: 197 VSGVYYRKGYRRSRRHPATRVFMALRIEVNGEIDSLVRGVSGVRSILGSGARLAVLTFHS 256 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 EDR +K F + + + K V+P + ++ N RSRSAKLR Sbjct: 257 REDREIKHLFREWVREGWG--------------RLLQSKPVLPGKAEIEHNPRSRSAKLR 302 Query: 313 A 313 Sbjct: 303 V 303 >gi|256372032|ref|YP_003109856.1| S-adenosyl-methyltransferase MraW [Acidimicrobium ferrooxidans DSM 10331] gi|256008616|gb|ACU54183.1| S-adenosyl-methyltransferase MraW [Acidimicrobium ferrooxidans DSM 10331] Length = 319 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 108/302 (35%), Positives = 171/302 (56%), Gaps = 10/302 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETM 78 H+PV++ +V+ + P G+ +LD T G GG++ + G+ VI LDRDP A+ + Sbjct: 6 HLPVMVAEVVRAVEPQ-GRRVLDVTVGLGGHAAALLDAGAALVIGLDRDPEALHLAARRL 64 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138 + ++F + TF L V + +D V+ DLGVSS+Q+D RGFSF+ +GPLDMRM Sbjct: 65 EAFGDRFEPVRGTFRDLARVVGARRIDAVIADLGVSSLQLDHAQRGFSFRLAGPLDMRMD 124 Query: 139 CSGIS-ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK 197 + A+ ++ + LT +L A R A AI+ TT+ L+ ++ + Sbjct: 125 PEAPTSAASLLASLDEDGLTELLRRGEVGPLARRYARAILAAMP----TTTEQLAEVVVE 180 Query: 198 TVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 S+ R HPAT FQALR+ VN+E+ +L L +A +AL+ GG+L V+++HSLEDR Sbjct: 181 ATPPSRRTTRRHPATLVFQALRLAVNDELGQLTALLPAAFEALEVGGVLAVLTYHSLEDR 240 Query: 257 LVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 LVK+FF + P+ + +V + ++ VVP+ ++VA N R+RSA+LR + Sbjct: 241 LVKRFFE--VAERGGAPRTTPAGSWTSVLERRPRRGVVPSDDEVARNPRARSARLRVARK 298 Query: 317 TV 318 Sbjct: 299 LA 300 >gi|325973262|ref|YP_004250326.1| s-adenosyl-methyltransferase MraW [Mycoplasma suis str. Illinois] gi|323651864|gb|ADX97946.1| s-adenosyl-methyltransferase MraW [Mycoplasma suis str. Illinois] Length = 304 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 85/308 (27%), Positives = 151/308 (49%), Gaps = 11/308 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 H+PV+L +V + + +D TFG GG+S+ F K +I +D DP + + Sbjct: 1 MHIPVMLREVCENWLSSANGIYIDCTFGCGGHSKEFLKSLGVNSRLIGMDVDPKVIPYAE 60 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG- 131 E + +FS ++ +++Y + DG++FDLG+S++Q+ +R FS+ S Sbjct: 61 E-LSSQDSRFSFLNVNYTSMRNYWKTNSLPPADGILFDLGLSTLQLKDEERTFSYNSSSS 119 Query: 132 PLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 L++R G S +++N K L I G +A R+ I++ R++ P L Sbjct: 120 TLELRFGLEGKSVYEILNNYPPKKLNWIFKKYGNISEAERLTQTIIQFRKNTPITEVNQL 179 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+++ +K +P FQ+LRI NNE+ + LR A + LK G L++++F Sbjct: 180 KEIIERSKILNKRKNKNPMKLIFQSLRIECNNELNCFKEALRQAAELLKVNGKLLIITFQ 239 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLED +V ++ S + P F + ++P++ ++ N SRSA+L Sbjct: 240 SLEDEIVLEWKRQNSSYIKIPE---MGEIIPPRFTLKSNSPLLPSRAEIETNWASRSAEL 296 Query: 312 RAGMRTVE 319 +T E Sbjct: 297 WVFTKTRE 304 >gi|58696920|ref|ZP_00372421.1| S-adenosyl-methyltransferase MraW [Wolbachia endosymbiont of Drosophila simulans] gi|58536850|gb|EAL60058.1| S-adenosyl-methyltransferase MraW [Wolbachia endosymbiont of Drosophila simulans] Length = 251 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 106/261 (40%), Positives = 153/261 (58%), Gaps = 17/261 (6%) Query: 60 NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSM 116 V A+DRD + Y ++ LF FS +++ + G+DG+VFD+GVSSM Sbjct: 2 QVYAIDRDETVTKFYDDLSVRYPDRIKLFIEKFSNIKNLLDSNNIEGIDGIVFDIGVSSM 61 Query: 117 QIDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175 Q+D GDRGFSF GPLDM M S I+AS VN +++ + G E+ + +IA A Sbjct: 62 QLDNGDRGFSFLHDGPLDMSMDNSSYINASTFVNALREEEIANTIYNYGGERHSRKIARA 121 Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 IV R+ +TT +L+ +++ V+ K ++I PATR+FQA+RI+VN+E+ EL +G+++A Sbjct: 122 IVNARKKKTIKTTFELADIVRSVVFRGK-SKIDPATRTFQAIRIWVNDELGELEKGIKAA 180 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295 + L G LIVV+FHSLEDR+VK FF F + KKV+ Sbjct: 181 SEILSENGKLIVVTFHSLEDRIVKTFFKDLCATDC------------KTFSLLNKKVIEA 228 Query: 296 TQEDVAFNRRSRSAKLRAGMR 316 + E+V+ N RSRSAKLRA R Sbjct: 229 SIEEVSANPRSRSAKLRAIQR 249 >gi|327281892|ref|XP_003225679.1| PREDICTED: probable S-adenosyl-L-methionine-dependent methyltransferase METT5D1-like [Anolis carolinensis] Length = 395 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 123/323 (38%), Positives = 169/323 (52%), Gaps = 38/323 (11%) Query: 32 LNPAPGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQ 89 L+ + ILD TFGAGG++++ +M + ALDRDP A Q Y +Q Sbjct: 72 LSNRHMECILDMTFGAGGHTKALLQKEMDIKLYALDRDPTAYELAQRLSDSYTQQIQPLL 131 Query: 90 ATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS----CS 140 FSQL+ + GV DGV+ D G SSMQ+D +RGFS +K GPLDMRM Sbjct: 132 GQFSQLEALLTSAGVQPGNLDGVLLDAGCSSMQLDTPERGFSLRKDGPLDMRMDGDRYPD 191 Query: 141 GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVY 200 +A+DVVN + + L IL + GEE+ A +IA AIV+ R P TQ L+S++ Sbjct: 192 MPTAADVVNALDQQALASILRMYGEERHAKKIALAIVQARSVYPITRTQQLASIVAGAFP 251 Query: 201 -----FSK---NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 K + H AT++FQALRIFVNNE+ EL GL++AEK LK GG + +SFHS Sbjct: 252 DVALYARKDLLHRPTHVATKTFQALRIFVNNELHELYAGLQTAEKFLKPGGRFVALSFHS 311 Query: 253 LEDRLVKKFF-------------------ASRSGKVMAVRHMIPSNAHPAVFQSITKKVV 293 LEDR++K+F R + + + +I KKV+ Sbjct: 312 LEDRIIKRFLLGIDISEKFNLSVRQKIKQMGRDFSELEEEDEFSNGNVNLKWIAIQKKVL 371 Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316 P +D+ N R RSAKLR ++ Sbjct: 372 TPQAKDLQDNPRGRSAKLRGAIK 394 >gi|284931424|gb|ADC31362.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Mycoplasma gallisepticum str. F] Length = 313 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 102/306 (33%), Positives = 154/306 (50%), Gaps = 11/306 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76 H PVLL++VI L + LD T G GG+S + +I D+D A++ ++ Sbjct: 9 HYPVLLKEVIENLITIKDGIYLDLTIGFGGHSYNIIKILDQKARLIGFDQDLQAIAHCKQ 68 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 ++ SL F L+ ++ +DG + DLGVSS Q+D DRGFS+ G L Sbjct: 69 LFSEF-NNVSLINDNFVNLKKHLQLMQIDKIDGCLIDLGVSSYQLDRADRGFSYHSLGRL 127 Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM + + A+ ++ + V +L +I+ GE K R+ A+ K + T ++ Sbjct: 128 DMRMDQNKEVDATKLIQNSTVSELVKIMKNYGEIKDPYRVVVALKKAFEKKELN-TLEVV 186 Query: 193 SLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 LI+K V ++ HPA R FQALRI VNNE+E L + L L GG + +++FH Sbjct: 187 ELIKKHVNKAELYANKHPARRYFQALRIAVNNELEVLEKLLSYLPSYLNKGGKIAIITFH 246 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLE+++VKK F + I + K + PTQ ++ NRRSRSAKL Sbjct: 247 SLEEKIVKKVFRHLASTSSLNNLPINNELLKKYHNHFNKG-LSPTQSELETNRRSRSAKL 305 Query: 312 RAGMRT 317 + Sbjct: 306 FVLEKI 311 >gi|150391505|ref|YP_001321554.1| S-adenosyl-methyltransferase MraW [Alkaliphilus metalliredigens QYMF] gi|263433292|sp|A6TUM7|RSMH2_ALKMQ RecName: Full=Ribosomal RNA small subunit methyltransferase H 2; AltName: Full=16S rRNA m(4)C1402 methyltransferase 2; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH 2 gi|149951367|gb|ABR49895.1| S-adenosyl-methyltransferase MraW [Alkaliphilus metalliredigens QYMF] Length = 349 Score = 283 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 102/331 (30%), Positives = 158/331 (47%), Gaps = 31/331 (9%) Query: 3 SKSCKTMSSAIHH---TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG- 58 K ++ I G H + + +++ L PG+ LDAT G GG++ K Sbjct: 32 DKYADAVAKVIQKGSTPAGMHRSICVNEILEFLKITPGQTGLDATLGYGGHTLEMLKRLN 91 Query: 59 --SNVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLG 112 ++ A+D D + QE + E ++ Q FS + + G ++ V+ DLG Sbjct: 92 SKGHLYAIDVDSIELPRTQERLEGLGYGSEILTIKQMNFSNIDQIALESGPLNFVLADLG 151 Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASR 171 VSSMQID +RGFSF+ GPLD+R++ + GISA+ + + +L +L +E ++ Sbjct: 152 VSSMQIDNPERGFSFKSEGPLDLRLNPNRGISAAARLKTISQDELQGMLLENADEPNSAA 211 Query: 172 IAHAIVKRRQSA-PFQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEI 225 I+ AI+ + TT L +I+ + F K+ R FQALRI VN+E Sbjct: 212 ISRAIISEIKKGIDISTTTQLQQIIKDALKFIPQNTRKDEIKKSCQRCFQALRIDVNDEF 271 Query: 226 EELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF 285 E L + L L GG + ++SFHS EDRLVKK F V+ Sbjct: 272 EMLYEFLEKLPATLAEGGRVAILSFHSGEDRLVKKSFQRF--------------FREGVY 317 Query: 286 QSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 + I + P+ E+ N R+RSAKLR ++ Sbjct: 318 REIAPNFIRPSTEECNTNGRARSAKLRWAIK 348 >gi|297807119|ref|XP_002871443.1| mraW methylase family protein [Arabidopsis lyrata subsp. lyrata] gi|297317280|gb|EFH47702.1| mraW methylase family protein [Arabidopsis lyrata subsp. lyrata] Length = 434 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 109/339 (32%), Positives = 163/339 (48%), Gaps = 42/339 (12%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCGQE 76 HVPV+L +V+ + + + +D T GA G+S S + S + + +D DP A G Sbjct: 95 HVPVMLGEVLDIFSSVRLRSFVDCTLGAAGHSSSIIQSHSELKHFVGMDVDPVARKLGHF 154 Query: 77 TMRDYK----------EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126 + + F ++ + Q + D GVDG++ DLG+SSMQ++ RGFS Sbjct: 155 HIDSLMHPTLKASIVLKNFKYIKSVVADTQPELLDVGVDGILMDLGMSSMQVNNPQRGFS 214 Query: 127 FQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 + GPLDMRM ++A D+VN +L R+L GEE + IVK R + Sbjct: 215 VLQEGPLDMRMDPQATLTAEDIVNSWPESELGRVLRDYGEESNWHLLQTRIVKARLNGGL 274 Query: 186 QTTQDLSSLIQKTVYFSKNNR---IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 +T +L LI+ + R I ATR FQ LRI VN+E++ L L S+ L G Sbjct: 275 HSTGELVDLIRGMSPAGRGGRQGWIKTATRVFQGLRIAVNDELKTLQNSLYSSFDVLGPG 334 Query: 243 GLLIVVSFHSLEDRLVKKFF----------ASRSGKVMAVRHMIPSNAHPAVFQ------ 286 G L V+SFHSLEDR+VK+ F + G + I + + Sbjct: 335 GRLAVISFHSLEDRVVKQTFLNILGFQREEINGEGNSVKPERQIEERVEKELKEKEAWIK 394 Query: 287 ---------SITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 +TK+ + P++E+ NRR+RSAKLR + Sbjct: 395 QTVIGSKGVILTKRPITPSEEEERLNRRARSAKLRVIQK 433 >gi|297268190|ref|XP_002799639.1| PREDICTED: putative S-adenosyl-L-methionine-dependent methyltransferase METT5D1-like isoform 2 [Macaca mulatta] Length = 452 Score = 283 bits (724), Expect = 4e-74, Method: Composition-based stats. Identities = 118/345 (34%), Positives = 170/345 (49%), Gaps = 71/345 (20%) Query: 20 HVPVLLEKVIALLNPAPGKV---------------------------------ILDATFG 46 H+PV++++V+ L+P G++ LD TFG Sbjct: 72 HIPVMVDEVVHCLSPQKGQISFMCIVLFAYPNNLVMWTRMVHLHTRKLRLREIFLDMTFG 131 Query: 47 AGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV 104 +GG++++ + S+ + ALDRDP A + + Y +Q FSQ + + GV Sbjct: 132 SGGHTKAILQKESDIVLYALDRDPTAYALAEHLSELYPKQIRAVLGQFSQAEALLTKAGV 191 Query: 105 -----DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS----CSGISASDVVNQANVKD 155 DGV+ DLG SSMQ+D +RGFS +K GPLDMRM +A+DVVN + Sbjct: 192 QPGTFDGVLMDLGCSSMQLDTPERGFSLRKDGPLDMRMDGGRYPDMPTAADVVNALDQPA 251 Query: 156 LTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSK--------NNRI 207 L IL GEEK A +IA AIV+ R P TQ L+S++ S Sbjct: 252 LASILRTYGEEKHARKIASAIVQARSIYPITRTQQLASIVAGAFPPSAIYARKDLLQRST 311 Query: 208 HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF----- 262 H AT++FQALRIFVNNE+ EL GL++A+K L+ GG L+ +SFHSLEDR++K+F Sbjct: 312 HIATKTFQALRIFVNNELNELYTGLKTAQKFLRPGGRLVALSFHSLEDRIIKRFLLGISM 371 Query: 263 --------------ASRSGKVMAVRHMIPSNAHPAVFQSITKKVV 293 S+ G + P +++ I KKV+ Sbjct: 372 TERFNLSVRQQVMKTSQLGSGHENTEEVSMRRAPLMWELIHKKVL 416 >gi|317498357|ref|ZP_07956653.1| MraW methylase [Lachnospiraceae bacterium 5_1_63FAA] gi|316894362|gb|EFV16548.1| MraW methylase [Lachnospiraceae bacterium 5_1_63FAA] Length = 398 Score = 282 bits (722), Expect = 6e-74, Method: Composition-based stats. Identities = 95/329 (28%), Positives = 162/329 (49%), Gaps = 28/329 (8%) Query: 3 SKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---S 59 + + + S G H+ + +++++ + PG+ LDAT G GG++R + Sbjct: 83 GDTIQKVISKGSTPAGMHISICVKEILEFFDIQPGQKGLDATLGYGGHTRKMLEKLQGKG 142 Query: 60 NVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSS 115 ++ ALD DP ++ + D + ++ F+ + + G D ++ DLGVSS Sbjct: 143 HIYALDVDPIESVKTEKRLHDAGFGEDILTIKHINFANIDQVAEEVGPFDFILADLGVSS 202 Query: 116 MQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAH 174 MQID +RGFS++ GPLD+R++ GISA++ + + +L +E A +IA Sbjct: 203 MQIDNPERGFSYKFEGPLDLRLNPEKGISAAERLEDITKAEFEGMLIENADEPYAKQIAK 262 Query: 175 AIVK-RRQSAPFQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEEL 228 V ++ +TT DL +I++ + F K R+FQALRI VN+E E L Sbjct: 263 ETVATMKRGKKIKTTTDLKDVIERALNFLPEKERKEAVKKSCQRTFQALRIDVNSEFEVL 322 Query: 229 AQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI 288 + L AL GG + +++FHS EDRLVK F ++ + Sbjct: 323 EELLEKLPDALAPGGKVAILTFHSGEDRLVKHAFK--------------YGKKVGIYSDV 368 Query: 289 TKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 K V+ P++E+ A N R++S K+R ++ Sbjct: 369 AKDVIRPSKEECAQNGRAKSTKMRWAIKV 397 >gi|302518535|ref|ZP_07270877.1| LOW QUALITY PROTEIN: MraW methylase [Streptomyces sp. SPB78] gi|302427430|gb|EFK99245.1| LOW QUALITY PROTEIN: MraW methylase [Streptomyces sp. SPB78] Length = 293 Score = 282 bits (721), Expect = 8e-74, Method: Composition-based stats. Identities = 103/263 (39%), Positives = 152/263 (57%), Gaps = 10/263 (3%) Query: 2 ESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMG 58 + + + A G HVPV+L + + LL PA PG V++D T G GG+S + Sbjct: 13 DGTAQDPPAPAAGTAEGRHVPVMLRRCLDLLGPALAEPGAVVVDCTLGLGGHSEALLSTF 72 Query: 59 S--NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGV 113 ++ALDRD A+ E + + E+ L A + +L D + G V G++FDLGV Sbjct: 73 PAARLVALDRDKEALRLAGERLAPFGERAMLAHAVYDELPDVLDRLGIPRVQGILFDLGV 132 Query: 114 SSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRI 172 SSMQ+D DRGF++ + PLDMRM + G+SA++V+N +L RIL GEEKQA RI Sbjct: 133 SSMQLDEADRGFAYAQDAPLDMRMDQTAGLSAAEVLNTYPPGELVRILRTYGEEKQARRI 192 Query: 173 AHAIVKRRQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQG 231 A+V+ R+ PF + L LI++ + +K +PA R+FQALRI VN E+ L + Sbjct: 193 VSAVVREREKEPFARSARLVELIREALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERA 252 Query: 232 LRSAEKALKAGGLLIVVSFHSLE 254 + +A L GG + V+++HSLE Sbjct: 253 IPAAVNTLAVGGRIAVLAYHSLE 275 >gi|315606646|ref|ZP_07881657.1| S-adenosyl-methyltransferase MraW [Prevotella buccae ATCC 33574] gi|315251656|gb|EFU31634.1| S-adenosyl-methyltransferase MraW [Prevotella buccae ATCC 33574] Length = 380 Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 88/236 (37%), Positives = 131/236 (55%), Gaps = 8/236 (3%) Query: 85 FSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-S 140 F+ ++ F L++++ GVD G++ DLGVSS D RGFSF+ PLDMRM+ Sbjct: 148 FTFVRSNFRYLKNWMRYYGVDHIDGLLADLGVSSHHFDDETRGFSFRFDAPLDMRMNKRG 207 Query: 141 GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVY 200 G +A+D+VN+ + L + + GE K + RIA A+VK R +TTQD ++ Sbjct: 208 GRTAADIVNEYDENRLADVFYLYGELKNSRRIAAALVKARAQGRIETTQDFVQAVEPL-- 265 Query: 201 FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKK 260 F + + FQALRI VNNE+ L + L +A + LK GG L V+++HSLEDR+VK Sbjct: 266 FRREREKKDMAKLFQALRIEVNNEMTALKEMLLAATELLKPGGRLSVITYHSLEDRIVKN 325 Query: 261 FFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 + + + + P F+ + KV+VP ++ N RSRSAKLR + Sbjct: 326 VMKAGNPEGKVAQDFFGRIETP--FRPVNNKVIVPEDDEQQRNPRSRSAKLRIAEK 379 Score = 96.0 bits (238), Expect = 8e-18, Method: Composition-based stats. Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 3/54 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFA 70 HVPVLL++ + LN PG + +D TFG GG+SR G+++ + D+D A Sbjct: 9 HVPVLLKESVDGLNIRPGGIYVDVTFGGGGHSREILSRLTGGAHLYSFDQDADA 62 >gi|196231370|ref|ZP_03130229.1| S-adenosyl-methyltransferase MraW [Chthoniobacter flavus Ellin428] gi|196224706|gb|EDY19217.1| S-adenosyl-methyltransferase MraW [Chthoniobacter flavus Ellin428] Length = 351 Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 100/316 (31%), Positives = 159/316 (50%), Gaps = 26/316 (8%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72 G H P+++ +++ +L P PG+ +DAT G GG+SR + G +I LD DP + Sbjct: 49 PAGMHRPIMVSEIMEILAPKPGEFAVDATLGYGGHSREILQRITPGGRLIGLDVDPLELP 108 Query: 73 CGQETMRDYK---EQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFS 126 + +R + F+ + ++ L + + G D ++ DLG+SSMQID RGF+ Sbjct: 109 KTEARLRALGFGPDVFTAQRVNYAGLPALIAREAPEGADIILADLGLSSMQIDNPSRGFT 168 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 F+ GPLD+RM+ G AS ++ N L ++L +E A+ + AI+ + P Sbjct: 169 FKVEGPLDLRMNPERGQPASALLATINAAKLEQLLTENADEPNAALLTRAILDAQARTPI 228 Query: 186 QTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 TT L+++I+ + + R FQALRI VN+E L LR + L+ GG Sbjct: 229 TTTTALATVIRTALASLPRIEPNDTIRRVFQALRIAVNDEFSALDTFLRHLPQCLRPGGR 288 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 + +++FHS EDR VK F + ++ I + V+ P E++ N Sbjct: 289 IAILTFHSGEDRRVKHAFK--------------TGLQEGLYSEIARDVLRPGAEELRANP 334 Query: 305 RSRSAKLRAGM-RTVE 319 RS SAKLR + R VE Sbjct: 335 RSASAKLRWAVGRKVE 350 >gi|237750751|ref|ZP_04581231.1| S-adenosyl-methyltransferase MraW [Helicobacter bilis ATCC 43879] gi|229373841|gb|EEO24232.1| S-adenosyl-methyltransferase MraW [Helicobacter bilis ATCC 43879] Length = 374 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 103/323 (31%), Positives = 163/323 (50%), Gaps = 34/323 (10%) Query: 19 DHVPVLLEKVIALLN----------------PAPGKVILDATFGAGGYSRSFCKMGSNV- 61 H+PVLLE ++ + +V++D T G GG SR+ + SN+ Sbjct: 56 PHIPVLLEHMLDTFDRIFLSTHSHYIAKKSLIKNKEVLIDCTLGFGGMSRALLERYSNLH 115 Query: 62 -IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL-QDYVPDKGVDG-----VVFDLGVS 114 I +DRD +A+ +E+M +K++F F+ L + + +G ++ D+GVS Sbjct: 116 IIGIDRDSYALEYNRESMAKFKDRFQTRHGDFATLLPQIIKEIEANGDHLCGILADIGVS 175 Query: 115 SMQIDCGDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIA 173 S Q+D DRGFSF + LDMRM + A +VN N +L I GE ++ ++ Sbjct: 176 SYQLDSIDRGFSFHSN-KLDMRMDRTQSLDADMIVNTYNKYELEEIFKNYGEIREYKKLV 234 Query: 174 HAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLR 233 + IV+ RQ T L ++ + +IHPAT +QALRI VN+E+ +L L Sbjct: 235 NLIVQERQRGRI-TADSLQNI---ALKLHSKAKIHPATLIYQALRIAVNDELGQLKSLLH 290 Query: 234 SAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMA--VRHMIPSNAHPAVFQSITKK 291 S + + L V+SFHSLEDR++K+ F + + + A S+ KK Sbjct: 291 SCQNLHEV--LFCVISFHSLEDRMIKESFKQFAKSCICDTTSFKCVCGNNHAKGFSLYKK 348 Query: 292 VVVPTQEDVAFNRRSRSAKLRAG 314 ++ +++A N+RSRSAKLRA Sbjct: 349 PLIADSKEIAQNKRSRSAKLRAF 371 >gi|85714965|ref|ZP_01045950.1| methyltransferase [Nitrobacter sp. Nb-311A] gi|85698162|gb|EAQ36034.1| methyltransferase [Nitrobacter sp. Nb-311A] Length = 419 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 127/298 (42%), Positives = 175/298 (58%), Gaps = 5/298 (1%) Query: 11 SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPF 69 + + HVPVL + +A+L G V +DATFGAGGYSR+ + VI +DRDP Sbjct: 86 AIMTEPPVRHVPVLGGEAVAMLALRAGGVYVDATFGAGGYSRAILATADTRVIGIDRDPA 145 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV---SSMQIDCGDRGFS 126 A++ G + + + +L + FS L + V V + SSMQ+D DRGFS Sbjct: 146 AIAGGSALVEESGGRLTLVEDRFSNLASVCAAQDVAVVDGVVMDVGVSSMQLDEADRGFS 205 Query: 127 FQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 F+ GPLDMRMS G +A+DVV A+ DL I+ I GEE+++ +A AIV R+ P Sbjct: 206 FRLDGPLDMRMSGHGPTAADVVAHASETDLADIIYIFGEERRSRAVARAIVAARRHGPIA 265 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 TT+ L+ ++ K V +K + IHPATR+FQALRIFVN E++EL L +AE+ LK GG L Sbjct: 266 TTRALADVVSKVV-RAKPHEIHPATRTFQALRIFVNEELDELVAALAAAERVLKPGGRLA 324 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 VVSFHSLEDR+VK F A R + RH F +TK+ + P +E++ N Sbjct: 325 VVSFHSLEDRIVKNFLARRGKRGGGSRHRPEIEQGSPSFAILTKRPLTPGEEEMHANP 382 >gi|288925513|ref|ZP_06419446.1| S-adenosyl-methyltransferase MraW [Prevotella buccae D17] gi|288337729|gb|EFC76082.1| S-adenosyl-methyltransferase MraW [Prevotella buccae D17] Length = 393 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 88/236 (37%), Positives = 131/236 (55%), Gaps = 8/236 (3%) Query: 85 FSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-S 140 F+ ++ F L++++ GVD G++ DLGVSS D RGFSF+ PLDMRM+ Sbjct: 161 FTFVRSNFRYLKNWMRYYGVDHIDGLLADLGVSSHHFDDETRGFSFRFDAPLDMRMNKRG 220 Query: 141 GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVY 200 G +A+D+VN+ + L + + GE K + RIA A+VK R +TTQD ++ Sbjct: 221 GRTAADIVNEYDENRLADVFYLYGELKNSRRIAAALVKARAQGRIETTQDFVQAVEPL-- 278 Query: 201 FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKK 260 F + + FQALRI VNNE+ L + L +A + LK GG L V+++HSLEDR+VK Sbjct: 279 FRREREKKDLAKLFQALRIEVNNEMTALKEMLLAATELLKPGGRLSVITYHSLEDRIVKN 338 Query: 261 FFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 + + + + P F+ + KV+VP ++ N RSRSAKLR + Sbjct: 339 VMKAGNPEGKVAQDFFGRIETP--FRPVNNKVIVPEDDEQQRNPRSRSAKLRIAEK 392 Score = 89.9 bits (222), Expect = 5e-16, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 3/52 (5%) Query: 22 PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFA 70 PVLL++ + LN PG + +D TFG GG+SR G+++ + D+D A Sbjct: 2 PVLLKESVDGLNIRPGGIYVDVTFGGGGHSREILSRLTGGAHLYSFDQDADA 53 >gi|310658142|ref|YP_003935863.1| methyltransferase [Clostridium sticklandii DSM 519] gi|308824920|emb|CBH20958.1| Methyltransferase [Clostridium sticklandii] Length = 348 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 99/331 (29%), Positives = 159/331 (48%), Gaps = 31/331 (9%) Query: 3 SKSCKTMSSAI---HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS 59 K + AI + G H+ + + +++ PG++ DAT G GG++ K Sbjct: 31 EKYSDEIEKAIQRGNTPAGMHISIAVNEILEFFQIKPGQIGFDATLGYGGHTLEMLKCLE 90 Query: 60 N---VIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLG 112 + + A D DP + + + + FS++ + G D ++ DLG Sbjct: 91 HQGCIFATDVDPIESQKTKARLESLGYGEDMLKIRNMNFSEIDKISKEAGKFDFILADLG 150 Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASR 171 VSSMQID DRGF++++ GPLD+R++ GISA++ + + N ++ +L +E A Sbjct: 151 VSSMQIDNPDRGFTYKREGPLDLRLNPEKGISAAERLKEMNQYEIEGMLLENSDEPHAEI 210 Query: 172 IAHAIVKRRQSA-PFQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEI 225 I+ AI+KR + +TT L LI+ T+ F + R FQALRI VN E Sbjct: 211 ISKAIIKRFEEGEKIETTSQLRDLIEDTLSFIPSKDREQEIKKTCQRVFQALRIDVNQEF 270 Query: 226 EELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF 285 E L L L G ++++SFHS EDRLVKK F + + + + Sbjct: 271 EVLYDFLEKLPAVLAPNGKVLIMSFHSGEDRLVKKSFKNYYREGI--------------Y 316 Query: 286 QSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 I+ V+ P+ E+ N R+RS K+R +R Sbjct: 317 SEISTDVIRPSAEECNRNPRARSTKIRFAIR 347 >gi|251772190|gb|EES52760.1| S-adenosyl-methyltransferase MraW [Leptospirillum ferrodiazotrophum] Length = 305 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 106/301 (35%), Positives = 164/301 (54%), Gaps = 23/301 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H PV+L + + L+ PG+ +DA G GG++R G +V+A+DRD AV +E + Sbjct: 12 HRPVMLAESMEWLDVRPGQWYVDANLGGGGHTREILARGGSVVAIDRDKGAVLAAREHLL 71 Query: 80 D-YKEQFSLFQATFSQLQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 Y ++ + + V +G V G++FDLG S++Q + +RG SF + GPLDMR Sbjct: 72 PLYPDRLRIIHGNNRNVASLVRQEGQHVSGILFDLGWSTIQGEDPERGLSFTEEGPLDMR 131 Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF-QTTQDLSSL 194 + +A D++ + +L R+L G+E A+ IA A+V+ R+ +TT L++ Sbjct: 132 LDTEQKETAEDLLESLSESELERVLSE-GDEPLAAPIARALVQARREGRLPRTTTALAAF 190 Query: 195 IQKTVYFS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL-KAGGLLIVVSFH 251 + Y + +R HPATR F ALRI VN E E L + L A + L GG LIV+SFH Sbjct: 191 VSGVYYRKGFRRSRRHPATRVFMALRIRVNREYENLEESLSGARELLSATGGRLIVLSFH 250 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 S EDR+VK+ F G+ A + ++ +VP E+V+ N R+RSA++ Sbjct: 251 SGEDRIVKRCFRLWVGEGEAA--------------FLFRRSLVPGDEEVSLNPRARSARM 296 Query: 312 R 312 R Sbjct: 297 R 297 >gi|54020186|ref|YP_115916.1| hypothetical protein mhp406 [Mycoplasma hyopneumoniae 232] gi|76363868|sp|Q600P9|RSMH_MYCH2 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|53987359|gb|AAV27560.1| conserved hypothetical protein [Mycoplasma hyopneumoniae 232] Length = 296 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 104/300 (34%), Positives = 152/300 (50%), Gaps = 16/300 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76 HVPVLLE++I L P +D T G GG+S + + ++ D+D A+ + Sbjct: 1 MHVPVLLEELILALEINPKGFYVDLTLGRGGHSLAILEKISNGKLVVFDKDQDALDQTRP 60 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + K+ + + FS+ Y+ + G VDG + DLGVSS QID RGFS+ K G L Sbjct: 61 KLLALKQNIEIIWSDFSRFDFYLENLGIQFVDGFIIDLGVSSPQIDDPARGFSYSKDGNL 120 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM S +SA V+N+ + L I G+ A IA AI+ R P +TT +L Sbjct: 121 DMRMDKSQKLSAFIVLNEYPYEKLVEIFFKYGQIPYAREIARAIINSR---PLKTTFELV 177 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +L++K + + + FQA+RI VNNE++ L + L K LK G + +++FHS Sbjct: 178 NLVKKVIPALVLVKKNFIKNVFQAVRIEVNNELDSLQKLLEKLPKFLKQGSKVAIITFHS 237 Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 LEDR+VKK F K + KV P ++ N R++SAKLR Sbjct: 238 LEDRIVKKAFLDLIRKD-------KLEFFQKGLPKFSMKVFRPKANELKSNPRAKSAKLR 290 >gi|167768055|ref|ZP_02440108.1| hypothetical protein CLOSS21_02599 [Clostridium sp. SS2/1] gi|167710384|gb|EDS20963.1| hypothetical protein CLOSS21_02599 [Clostridium sp. SS2/1] Length = 352 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 94/329 (28%), Positives = 161/329 (48%), Gaps = 28/329 (8%) Query: 3 SKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---S 59 + + + S G H+ + +++++ + PG+ LDAT G GG++R + Sbjct: 37 GDTIQKVISKGSTPAGMHISICVKEILEFFDIQPGQKGLDATLGYGGHTRKMLEKLQGKG 96 Query: 60 NVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSS 115 ++ ALD DP ++ + D + ++ F+ + + G D ++ DLGVSS Sbjct: 97 HIYALDVDPIESVKTEKRLHDAGFGEDILTIKHINFANIDQVAEEVGPFDFILADLGVSS 156 Query: 116 MQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAH 174 MQID +RGFS++ GPLD+R++ GISA++ + + +L +E A +IA Sbjct: 157 MQIDNPERGFSYKFEGPLDLRLNPEKGISAAERLEDITKAEFEGMLIENADEPYAKQIAK 216 Query: 175 AIVK-RRQSAPFQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEEL 228 V ++ +TT DL +I++ + F K R+FQALRI VN+E E L Sbjct: 217 ETVATMKRGKKIKTTTDLKDVIERALNFLPEKERKEAVKKSCQRTFQALRIDVNSEFEVL 276 Query: 229 AQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI 288 + L AL GG + +++FHS EDRLVK F ++ + Sbjct: 277 EELLEKLPDALAPGGKVAILTFHSGEDRLVKHAFK--------------YGKKVGIYSDV 322 Query: 289 TKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 K V+ P++E+ N R++S K+R ++ Sbjct: 323 AKDVIRPSKEECTQNGRAKSTKMRWAIKV 351 >gi|123965435|ref|YP_001010516.1| S-adenosylmethionine-dependent methyltransferase [Prochlorococcus marinus str. MIT 9515] gi|262824968|sp|A2BUE8|RSMH_PROM5 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|123199801|gb|ABM71409.1| Predicted S-adenosylmethionine-dependent methyltransferase [Prochlorococcus marinus str. MIT 9515] Length = 300 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 106/316 (33%), Positives = 172/316 (54%), Gaps = 30/316 (9%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLN----PAPGK-VILDATFGAGGYSRSFCKMGSNV--I 62 + + ++ +H V+ ++++ ++ + K +DAT G GG+S K ++ I Sbjct: 3 TDLSNSSLFNHKSVMTDEILYSIDQYPFISDNKLTAIDATLGGGGHSYQLLKKYPDLKII 62 Query: 63 ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGD 122 LD DP A + ++K + + + FS + P + V V+ DLGV+S QID + Sbjct: 63 GLDHDPIARESALNKLEEFKSRIEIIPSNFSNFE---PKEKVSFVIADLGVNSNQIDSPE 119 Query: 123 RGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-R 180 RGFSFQK GPLDMRM+ ++A +++ + KDL ++ G+E+ + +I+ I K + Sbjct: 120 RGFSFQKDGPLDMRMNPLIKMNAENLIETLSEKDLADLIFKFGDERLSRKISRKIKKDLK 179 Query: 181 QSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 + + T+DL+ I + +IHPATR+FQALRI VNNEIE L + L+ A L Sbjct: 180 EKGKYSGTKDLAYSIAGCFPPKQRYRKIHPATRTFQALRIAVNNEIEALEKFLKIAPDWL 239 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 GG++ ++SFHS+EDRLVK F +++TKK + P +++ Sbjct: 240 LTGGIISIISFHSIEDRLVKNSFKGDY-----------------RLKNLTKKPITPNKKE 282 Query: 300 VAFNRRSRSAKLRAGM 315 + N+RSRSAKLR Sbjct: 283 IENNKRSRSAKLRIAQ 298 >gi|291276974|ref|YP_003516746.1| putative S-adenosyl-L-methionine-dependent methyltransferase mraW [Helicobacter mustelae 12198] gi|290964168|emb|CBG40013.1| putative S-adenosyl-L-methionine-dependent methyltransferase mraW [Helicobacter mustelae 12198] Length = 303 Score = 279 bits (715), Expect = 4e-73, Method: Composition-based stats. Identities = 95/306 (31%), Positives = 160/306 (52%), Gaps = 16/306 (5%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74 H+PVLL +V+ + +I+D T G GG+S++ + +I +D+D A + Sbjct: 3 TSPHIPVLLHEVLDIFKDIKEGIIIDCTLGFGGHSKALLEQNQSIRIIGIDKDKDARAYA 62 Query: 75 QETMRDYKEQFSLFQATFS-QLQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + + +KE+F + F Q++ + G + GV+ D+GVSS Q+D +GF F+ Sbjct: 63 TKLLSPFKERFCCVASGFGEQIEPLIAQYGREIKGVLADIGVSSYQLDTPKKGFGFESEV 122 Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 LDMRM ISA ++N + L R+ GE +++ ++A + + R F + Sbjct: 123 -LDMRMDNDAHISAKTILNHYSAFALERVFREYGELRESKKLAQLLSQERTRTDFGDPKT 181 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 ++ ++ +N +I P +QALRI VN E+EEL + L A+K L V++F Sbjct: 182 FNAFLKAHF---RNPKILPL--VYQALRIEVNGELEELERLLLHAQKL--KDARLCVITF 234 Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 HSLEDR++K+ S + + + H +TKK ++P+QE++ N RSRS Sbjct: 235 HSLEDRILKQALKSYTKSCICPLEALKCTCGNHHQKGVLLTKKPIIPSQEEIKRNPRSRS 294 Query: 309 AKLRAG 314 AK+RA Sbjct: 295 AKMRAF 300 >gi|313106950|ref|ZP_07793153.1| putative methyltransferase [Pseudomonas aeruginosa 39016] gi|310879655|gb|EFQ38249.1| putative methyltransferase [Pseudomonas aeruginosa 39016] Length = 247 Score = 279 bits (714), Expect = 4e-73, Method: Composition-based stats. Identities = 100/247 (40%), Positives = 146/247 (59%), Gaps = 10/247 (4%) Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 M +F + Q +F++L D V +G VDGV+ DLGVSS Q+D +RGFSF GPL Sbjct: 1 MAAEDGRFVIVQRSFAELGDEVRARGLEGRVDGVLLDLGVSSPQLDDPERGFSFLNDGPL 60 Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMRM+ GISA++ + A +++ R+ GEE+ A R+A AIV+RRQ PF+ T DL+ Sbjct: 61 DMRMNPGQGISAAEFIANAAEEEIARVFKEYGEERFAKRMARAIVQRRQERPFERTADLA 120 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 +I + + +PATR+FQ LRI VNNE+ +L +GL +A ++L GG L+V+SFHS Sbjct: 121 EVITVANPAWEKGK-NPATRAFQGLRIHVNNELGDLERGLDAALESLAVGGRLVVISFHS 179 Query: 253 LEDRLVKKFFASRSG---KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 LEDR+VK F + + I S + + K ++E++ N RSRSA Sbjct: 180 LEDRIVKLFMRKHAKGEADNLPRDLPIRSKVFEPRLKLL-GKPQYASEEELKANPRSRSA 238 Query: 310 KLRAGMR 316 +R + Sbjct: 239 VMRVAEK 245 >gi|325106882|ref|YP_004267950.1| ribosomal RNA small subunit methyltransferase H [Planctomyces brasiliensis DSM 5305] gi|324967150|gb|ADY57928.1| Ribosomal RNA small subunit methyltransferase H [Planctomyces brasiliensis DSM 5305] Length = 307 Score = 278 bits (713), Expect = 6e-73, Method: Composition-based stats. Identities = 114/307 (37%), Positives = 163/307 (53%), Gaps = 30/307 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H PVLL + I + PG ++D T GA G+S K G +I LDRDP ++ Sbjct: 9 HRPVLLRETIQGMELKPGMTVIDGTVGAAGHSSEIWKRIQPGGRLIGLDRDPEMLARSSC 68 Query: 77 TMRDYKEQFSLFQATFSQ---LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 + D + L A++ + +++ + VD ++ DLG+SS Q+ RGF F G L Sbjct: 69 RLGDSAD---LIHASYLDANGVLEHLGVEKVDRLLVDLGLSSDQLADDQRGFGFATEGQL 125 Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 DMR G +N+A+V ++T++L GEE QA++IA +V R+S P + L Sbjct: 126 DMRFDMTQGKPVHHWLNKADVAEITKVLSEYGEEPQAAQIAAKVVDARRSQPITSVAALR 185 Query: 193 SLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLR-SAEKALKAGGLLIVVS 249 +I+K + HPATR+FQALRIF N E+E L + L +A LK GGLL V++ Sbjct: 186 EIIEKVAGGRGRAAGKSHPATRTFQALRIFANAELEHLQRFLTITAPYVLKPGGLLAVIT 245 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309 FHSLEDRL K+ A R V+ +KK + PT ++ N RSRSA Sbjct: 246 FHSLEDRLTKQALADRE-----------------VWADSSKKPIGPTPLEIKMNPRSRSA 288 Query: 310 KLRAGMR 316 KLR G+R Sbjct: 289 KLRIGIR 295 >gi|291561054|emb|CBL39854.1| S-adenosyl-methyltransferase MraW [butyrate-producing bacterium SSC/2] Length = 352 Score = 278 bits (713), Expect = 7e-73, Method: Composition-based stats. Identities = 96/329 (29%), Positives = 161/329 (48%), Gaps = 28/329 (8%) Query: 3 SKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---S 59 + + + S G H+ + +++++ + PG+ LDAT G GG++R + Sbjct: 37 GDTIQKVISKGSTPAGMHISICVKEILEFFDIQPGQKGLDATLGYGGHTRKMLEKLQGKG 96 Query: 60 NVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSS 115 ++ ALD DP ++ + D + ++ F+ + + G D ++ DLGVSS Sbjct: 97 HIYALDVDPIESVKTEKRLHDAGFGEDILTIKHINFANIDQVAEEVGPFDFILADLGVSS 156 Query: 116 MQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAH 174 MQID +RGFS++ GPLD+R++ GISA++ + + +L +E A +IA Sbjct: 157 MQIDNPERGFSYKFEGPLDLRLNPEKGISAAERLEDITKAEFEGMLIENADEPYAKQIAK 216 Query: 175 AIVK-RRQSAPFQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEEL 228 V ++ +TT DL +I++ + F K R+FQALRI VN+E E L Sbjct: 217 ETVATMKRGKKIKTTTDLKDVIERALNFLPEKERKEAVKKSCQRTFQALRIDVNSEFEVL 276 Query: 229 AQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI 288 + L AL GG + ++ FHS EDRLVK F ++ I Sbjct: 277 EELLEKLPDALAPGGKVAILIFHSGEDRLVKHAFK--------------YGKKAGIYSDI 322 Query: 289 TKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 K V+ P++E+ A N R++S K+R ++ Sbjct: 323 AKDVIRPSKEECAQNGRAKSTKMRWAIKV 351 >gi|325182849|emb|CCA17304.1| SadenosylLmethioninedependent methyltransferase mraWlike protein putative [Albugo laibachii Nc14] Length = 365 Score = 278 bits (711), Expect = 9e-73, Method: Composition-based stats. Identities = 105/333 (31%), Positives = 174/333 (52%), Gaps = 36/333 (10%) Query: 20 HVPVLLEKVIALLNPAPGKV---ILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCG 74 HVPVL++ V LL KV +DAT G G+++ + N+ +DRDP +S Sbjct: 31 HVPVLIKSVTKLLVSEEMKVPRYFVDATVGCAGHAQKILESDPNIRMLCIDRDPEVLSIA 90 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + ++ + + +++ L++++ G V G++ DLGV+S+ D +RGFS+ + Sbjct: 91 TDNLKKFTSRVKFVNGSYADLENHLKVSGFPSEVSGILVDLGVNSLHYDKPERGFSWLRD 150 Query: 131 GPLDMRMSCSGIS---ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS----- 182 GPL+MR S + A+D++ ++ +LTRI GE K A A AIV++R++ Sbjct: 151 GPLNMRFDESDSTIDCAADILQTSSEVELTRIFREYGELKCAKEYAKAIVRKRETAAPGS 210 Query: 183 APFQTTQDLSSLIQKTVYFSKNNRIHPA--------------TRSFQALRIFVNNEIEEL 228 F+TT L I++ + R+ P+ T FQALRI VN E+ + Sbjct: 211 RAFETTFHLRDAIEEVAAKWRPKRLSPSHASKTNRSSLARPITGCFQALRIQVNKELAHV 270 Query: 229 AQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRS-----GKVMAVRHMIPSNAHPA 283 +G+ L G L+ ++FHSLEDR +K+ F + + G++ +++ + + Sbjct: 271 HEGVPVLANHLTPGARLVTIAFHSLEDRPIKQIFRTLAHELKDGQLDSLQCDLSKSLRGK 330 Query: 284 VFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 F+ I KKVV P +E+V N RSRSA+LR R Sbjct: 331 TFRFINKKVVKPCREEVVENPRSRSARLRCLER 363 >gi|33860731|ref|NP_892292.1| hypothetical protein PMM0171 [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|42559450|sp|Q7V3B1|RSMH_PROMP RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|33633673|emb|CAE18630.1| conserved hypothetical protein [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 300 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 108/316 (34%), Positives = 168/316 (53%), Gaps = 30/316 (9%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLN----PAPGK-VILDATFGAGGYSRSFCKMGSNV--I 62 + ++ +H V+ ++++ ++ + K +DAT G GG+S K ++ I Sbjct: 3 TDLSDSSLFNHKSVMTDEILVSVDQYPLISDNKLTAIDATLGGGGHSYQLLKKYPDLKII 62 Query: 63 ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGD 122 LD DPFA + ++K + + + F+ + P + V V+ DLGV+S QID Sbjct: 63 GLDHDPFARQSAFIKLEEFKSRIEICPSNFANFE---PKEKVSFVIADLGVNSNQIDNPQ 119 Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181 RGFSFQK GPLDMRM+ ++A D++ N KDL ++ G+E+ + +I+ I K Q Sbjct: 120 RGFSFQKDGPLDMRMNPLLEMNAEDLIETLNEKDLADLIFKFGDERLSRKISRRIKKDLQ 179 Query: 182 SA-PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239 + T+DL+ I + +IHPATR+FQALRI VN EIE L + L A L Sbjct: 180 EKGKYSGTKDLAYSIAGCFPPKQRYRKIHPATRTFQALRIAVNKEIEALERFLELAPNWL 239 Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299 GG++ ++SFHS+EDRLVK F +++TKK + P +++ Sbjct: 240 LPGGIISIISFHSIEDRLVKNSFKGDE-----------------RLKNLTKKPITPNEKE 282 Query: 300 VAFNRRSRSAKLRAGM 315 + N+RSRSAKLR Sbjct: 283 IENNKRSRSAKLRIAQ 298 >gi|42559447|sp|Q7U3X9|RSMH_SYNPX RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Length = 296 Score = 277 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 106/312 (33%), Positives = 160/312 (51%), Gaps = 28/312 (8%) Query: 13 IHHTIGDHVPVLLEKVIAL--LNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDP 68 + + HVPVL E V+ P +++DAT G GG+S + +I LD+D Sbjct: 1 MPAPLFSHVPVLSEAVMDAGRQMPRAEGLLIDATLGGGGHSALMLEQQPGLRLIGLDQDA 60 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 A + E + + ++ ++ F+ +Y P + V+ DLGVSS Q+D +RGFSF+ Sbjct: 61 TARAAAAERLAPFGDRVTIVATNFA---EYTPPEPALMVLADLGVSSPQLDVAERGFSFR 117 Query: 129 KSGPLDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ-SAPF 185 GPLDMRM+ G +A++++++ +L ++ GEE+ + RIA I + Sbjct: 118 LDGPLDMRMNAVGDGATAAELIDRLEENELADLIYAYGEERLSRRIARRIKADLAVQGAY 177 Query: 186 QTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 T L+ + RIHPATR+FQALRI VN+E+ L + L+ A L+ GGL Sbjct: 178 SGTAALAYAVAGCYPPQGTPRRIHPATRTFQALRIAVNDELGVLDRLLQQAPDWLEPGGL 237 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 + ++SFHSLEDR VK F + IT+K VV T+E+ N Sbjct: 238 VGIISFHSLEDRRVKTAF-----------------LRDERLERITRKPVVATEEEEEANP 280 Query: 305 RSRSAKLRAGMR 316 RSRSAK R + Sbjct: 281 RSRSAKWRLARK 292 >gi|326792370|ref|YP_004310191.1| ribosomal RNA small subunit methyltransferase H [Clostridium lentocellum DSM 5427] gi|326543134|gb|ADZ84993.1| Ribosomal RNA small subunit methyltransferase H [Clostridium lentocellum DSM 5427] Length = 349 Score = 277 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 106/331 (32%), Positives = 162/331 (48%), Gaps = 31/331 (9%) Query: 3 SKSCKTMSSAI---HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--- 56 K T+ I G H+ + +++++ L PG+ LDAT G GG++ K Sbjct: 32 EKYGDTIEKVIKKGSTPAGMHISICVKEILEFLQIKPGQKGLDATLGYGGHTLEMLKCLE 91 Query: 57 MGSNVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLG 112 ++ ALD DP + ++ + D E ++ Q F + + G D ++ DLG Sbjct: 92 AKGHMYALDVDPIEIVKTKKRLEDLGYGEEILTIKQLNFRDIDQVAAENGLFDFMLADLG 151 Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASR 171 VSSMQID DRGFSF+ GPLD+R+ GISA++ + K+L +L +E A Sbjct: 152 VSSMQIDNPDRGFSFKYEGPLDLRLDPEKGISAAERLKDMTQKELEGMLIENSDEPYAKE 211 Query: 172 IAHAIV-KRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPA-----TRSFQALRIFVNNEI 225 I+ AI+ K R+ TT L +I + + F ++ A R+FQALRI VN+E Sbjct: 212 ISEAIISKIRKKDYISTTTKLQQVIGEALEFIPEDKRKEAIKKSCQRTFQALRIDVNSEF 271 Query: 226 EELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF 285 E L + L L GG + +++FHS EDRLVKK F V+ Sbjct: 272 EVLEEFLEKLPNVLAKGGRVAILTFHSGEDRLVKKSFKRL--------------LREGVY 317 Query: 286 QSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 I +V+ P+ E+ N R+RS K+R ++ Sbjct: 318 SEIATEVIRPSAEECNMNGRARSTKMRWAIK 348 >gi|295698684|ref|YP_003603339.1| S-adenosyl-methyltransferase MraW [Candidatus Riesia pediculicola USDA] gi|291157297|gb|ADD79742.1| S-adenosyl-methyltransferase MraW [Candidatus Riesia pediculicola USDA] Length = 310 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 98/308 (31%), Positives = 166/308 (53%), Gaps = 18/308 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPFAVSCGQ 75 +H+ VL E+VI LN +D TFG GG+S+ + +IA+DRDP ++S + Sbjct: 5 NHIAVLPEEVIEGLNIKRDGTYIDCTFGQGGHSKLILSKLEKKGKLIAIDRDPKSISVAK 64 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + +F + FS + + ++ V+G++ DLG+S +QI+ +RGFSF+++G Sbjct: 65 KI---KDSRFIIKHGLFSDIYQFAKEEKIVGKVNGILLDLGISMIQINDENRGFSFRRNG 121 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---PFQT 187 LDMRM+ GI A + +A +++ IL GEEK++ +I+ +I ++ + Sbjct: 122 SLDMRMNPEVGIPAKKWLEKAKREEIELILRRYGEEKKSRKISRSIFRQNHKKNLKKITS 181 Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 T+ L ++ + V + + HPATR+FQA+RI +NNE+EEL + L + L + V Sbjct: 182 TRQLVEIVSQIVSYKR---KHPATRTFQAIRIHINNELEELKEVLEKSLMVLAPLSRIAV 238 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 +SFHSLE R++K F + + N + + +K + P + +V N +SR Sbjct: 239 ISFHSLESRIIKNFIKKYDSNSIINKKTFKKNIPEYIKLKLIEK-IKPKRSEVYKNPKSR 297 Query: 308 SAKLRAGM 315 SA LR Sbjct: 298 SALLRIIQ 305 >gi|311087661|gb|ADP67740.1| S-adenosyl-methyltransferase MraW [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 271 Score = 277 bits (708), Expect = 3e-72, Method: Composition-based stats. Identities = 107/271 (39%), Positives = 164/271 (60%), Gaps = 16/271 (5%) Query: 55 CKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFD 110 + ++DRDP A S G + +F + FS+L D+ ++ V+G++FD Sbjct: 4 LGQSGRLYSIDRDPIAFSIGSKI---KDSRFHIINENFSKLLDFAKNEKIIGKVNGIIFD 60 Query: 111 LGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQA 169 LGVSS+QID RGFSF+ GPLDMRM+ + GISAS+ + ++NVK+++ +L GEE+ + Sbjct: 61 LGVSSIQIDDYRRGFSFKNDGPLDMRMNPNYGISASEWLFESNVKEISFVLKNFGEERFS 120 Query: 170 SRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELA 229 +IA+AI +R Q +T +L+++I+KT+ KN HPA RSFQA+RI++N E+EE+ Sbjct: 121 RKIAYAIKRRSQIKKITSTLELANIIKKTIPT-KNKFKHPARRSFQAIRIYINQELEEIQ 179 Query: 230 QGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAV 284 + L + K LK GG + ++SFHSLEDRLVKKF S K + M + Sbjct: 180 KALENTLKILKPGGRISIISFHSLEDRLVKKFMIKNSTKAIIPYGMPITEEQLNRLTTCK 239 Query: 285 FQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 + I + ++PTQ ++ N R+RS+ LR Sbjct: 240 LKIINR--ILPTQNEINNNPRARSSVLRIAE 268 >gi|255588801|ref|XP_002534724.1| UDP-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase, putative [Ricinus communis] gi|223524690|gb|EEF27660.1| UDP-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase, putative [Ricinus communis] Length = 850 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 94/244 (38%), Positives = 137/244 (56%), Gaps = 7/244 (2%) Query: 95 LQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQ 150 + + + GV DG++ DLG+SS QID G RGFSF+ GPLDMRM S G +A++ + Sbjct: 1 MATVLAELGVQAVDGILLDLGISSPQIDEGVRGFSFRFDGPLDMRMDQSRGKTAAEWLAT 60 Query: 151 ANVKDLTRILGILGEEKQASRIAHAIVKRRQSA-PFQTTQDLSSLIQKTVYFSKNNRIHP 209 + K L ++ GEE+ A ++A AIVK R+ TT L+ ++ + ++ + +P Sbjct: 61 MSEKQLAEVIRDYGEERFAKQVARAIVKEREDGHAITTTGQLAKIVAGAIPKNEPGQ-NP 119 Query: 210 ATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKV 269 ATR+FQALRIFVN E+EEL+ L + L+ G L V+SFHSLEDR+VK+F S + Sbjct: 120 ATRTFQALRIFVNQELEELSLVLPDCLQLLRPQGRLAVISFHSLEDRIVKRFIQSEVDRD 179 Query: 270 -MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDDSFV 328 + + + P K + P + +VA N RSRSA LR RT + V Sbjct: 180 NLPAGLPVRAKDLPQPRLLAVGKAIKPGKAEVAANVRSRSAVLRVAERTQGEAFSRRKVV 239 Query: 329 HLPR 332 +P Sbjct: 240 LMPH 243 >gi|290989161|ref|XP_002677211.1| predicted protein [Naegleria gruberi] gi|284090817|gb|EFC44467.1| predicted protein [Naegleria gruberi] Length = 300 Score = 275 bits (705), Expect = 5e-72, Method: Composition-based stats. Identities = 122/310 (39%), Positives = 169/310 (54%), Gaps = 48/310 (15%) Query: 38 KVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMR----DYK-EQFSLFQA 90 K+ +DATFGAGGY+R + G VI +D D + +E + ++ E+ + Sbjct: 16 KLFIDATFGAGGYTREILRAYPGCKVIGIDTDYYNNPTIKENEKLIHEEFGKERLEVHCV 75 Query: 91 TFSQLQDYVPDKGV-----------DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 F +++ V +K V DG+VFDLGVSSMQ+D G RGFSF + GPL Sbjct: 76 NFREIKKVVQEKIVPQLKSDTSNVIDGIVFDLGVSSMQLDQGHRGFSFLREGPL------ 129 Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQTTQDLSSLIQKT 198 A DVVN + DL ++ GE+ +A RIA AIV R + PF+TT +L++LI+K Sbjct: 130 ----ARDVVNNMSELDLRIMITKFGEDDKAYRIAKAIVDYRNNVKPFETTLELANLIEKI 185 Query: 199 VYF--SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG-GLLIVVSFHSLED 255 F K RIHPAT++FQA+RIFVN+E+ L L +++ LK G G L+VVS+HSLED Sbjct: 186 TPFHERKKKRIHPATKTFQAIRIFVNDELSALQNALYASKDILKIGTGRLVVVSYHSLED 245 Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 R+ K F F+ ITK ++P +V FN RSRSAKLR Sbjct: 246 RITKDFMKENQDS----------------FKKITKGTIIPDDAEVEFNVRSRSAKLRCAQ 289 Query: 316 RTVERSIEDD 325 R ++D Sbjct: 290 RVENNRTDED 299 >gi|312196214|ref|YP_004016275.1| S-adenosyl-methyltransferase MraW [Frankia sp. EuI1c] gi|311227550|gb|ADP80405.1| S-adenosyl-methyltransferase MraW [Frankia sp. EuI1c] Length = 341 Score = 275 bits (705), Expect = 5e-72, Method: Composition-based stats. Identities = 104/297 (35%), Positives = 162/297 (54%), Gaps = 10/297 (3%) Query: 18 GDHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVS 72 H+PVLL++V LL P PG + +DAT G GG++ + + ++ LDRDP A++ Sbjct: 3 ASHIPVLLDRVRTLLTPALTQPGAIAVDATLGLGGHAEAMLRALPELRLVGLDRDPQALA 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK 129 +E + + A + ++ + G V V+FDLGVSS+Q+D DRGF++ + Sbjct: 63 ASRERLAFAAGRVEFAHAVYDEIPAVLDRLGIPAVHAVLFDLGVSSLQLDLDDRGFAYSR 122 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 PLDMRM + G +A+DV+N + L R+L GEE A RIA A+V R F T+ Sbjct: 123 DAPLDMRMDPTTGRTAADVLNTYDEAALARVLRRYGEEPFARRIAAAVVAERAREAFTTS 182 Query: 189 QDLSSLIQKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 L+ L++ + + +PA R+FQALRI VN E+E L + L +A + GG + V Sbjct: 183 SRLADLVRAAIPAAARRTGGNPAKRTFQALRIEVNAELEVLERALPAALDRIAVGGRIAV 242 Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304 +++HSLEDRLVK+ A + + + F+ +T+ PT+ + A N Sbjct: 243 LAYHSLEDRLVKRALADVTTTRVPPDMPVVPAEAEPTFRLLTRGSEPPTEAETAANP 299 >gi|161870663|ref|YP_001599836.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis 053442] gi|161596216|gb|ABX73876.1| S-adenosyl-methyltransferase mraW [Neisseria meningitidis 053442] Length = 264 Score = 275 bits (704), Expect = 7e-72, Method: Composition-based stats. Identities = 96/253 (37%), Positives = 140/253 (55%), Gaps = 6/253 (2%) Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + ++ + F+ Q + G VDG +FDLG+SS QID G RGFSF+ P Sbjct: 3 EELARSDKRVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGSRGFSFRFDAP 62 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM G+SA++ + A+ +DL ++ GEE+ + +IA AIV +R +P TT+ L Sbjct: 63 LDMRMDTMRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRAESPIDTTRKL 122 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + ++ + V + + PATR+FQA+RIF+N E+EE+ L LK GG L V++FH Sbjct: 123 AQIVAQNVRTRERGQ-DPATRTFQAIRIFINRELEEVGAVLPQVMCRLKEGGRLAVIAFH 181 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAK 310 SLEDR+VK+F S R A P I + + P + ++A N R+RSA Sbjct: 182 SLEDRIVKQFVKKYSQHAPLPRWAAVREADLPEPPLKIAGRALKPGEAEIAANPRARSAV 241 Query: 311 LRAGMRTVERSIE 323 LR RT E Sbjct: 242 LRVAERTAGPIPE 254 >gi|330938035|gb|EGH41807.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv. pisi str. 1704B] Length = 246 Score = 275 bits (704), Expect = 7e-72, Method: Composition-based stats. Identities = 93/242 (38%), Positives = 143/242 (59%), Gaps = 8/242 (3%) Query: 82 KEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 +F + Q +F++L ++G V G++ DLGVSS Q+D +RGFSF GPLDMRM Sbjct: 4 DGRFVIVQRSFAELGSETQERGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDGPLDMRM 63 Query: 138 SCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 + G+SA++ + A +++ R+ GEE+ A R+A+A+V RR+ PF+ T DL+ +++ Sbjct: 64 DPTCGVSAAEFIATAPAEEIARVFKEYGEERFAKRMANAVVARREVQPFERTADLAEVLK 123 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 + + +PATR+FQ LRI VNNE+ +L GL +A AL+ GG L+V+SFHSLEDR Sbjct: 124 VANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLVVISFHSLEDR 182 Query: 257 LVKKFFASRS-GKVMAVRHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFNRRSRSAKLRAG 314 +VK F + G+ + +P P + I K + + N RSRSA +R Sbjct: 183 IVKLFMRKLAKGEADNMPRNLPIQYKPFEPKIKIHGKAQFASDVETKANPRSRSAVMRVA 242 Query: 315 MR 316 + Sbjct: 243 EK 244 >gi|307297403|ref|ZP_07577209.1| S-adenosyl-methyltransferase MraW [Thermotogales bacterium mesG1.Ag.4.2] gi|306916663|gb|EFN47045.1| S-adenosyl-methyltransferase MraW [Thermotogales bacterium mesG1.Ag.4.2] Length = 299 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 98/295 (33%), Positives = 157/295 (53%), Gaps = 29/295 (9%) Query: 20 HVPVLLEKVIALL-NPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H V++ + + L +D T G GG+ R+ + + +I LD D ++ + Sbjct: 9 HRSVMIHEALHYLLGGRLTGTYIDCTAGEGGHIRAMLEATEGQAKIIGLDVDSEVLNIAE 68 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + ++DY+E LF ++ + + GV DG + D+GVS+ Q+ RGFS++ P Sbjct: 69 QNLKDYRESVELFNLSYVDFEIALRQAGVEKVDGFLLDVGVSTFQLKAKGRGFSYELDEP 128 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEK-QASRIAHAIVKRRQSAPFQTTQD 190 LDMRM+ S +A+DVVN +L+RI+ G+EK A +IA +IV RR P TT+D Sbjct: 129 LDMRMNLSQKRTAADVVNSYREDELSRIIFEFGDEKRFARKIARSIVSRR---PLFTTKD 185 Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 L I+ + ++ R H AT++FQA+RI VN E+E + LR L GG ++++ Sbjct: 186 LHDAIKAAIPPAERYKRRRHFATKTFQAVRIEVNQELENIESTLRKIPGFLNQGGRIVII 245 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 SFHSLED + K+ F +S + + +TKK V P++E+V N Sbjct: 246 SFHSLEDGIAKRVFREKS---------------ESELKILTKKPVQPSKEEVELN 285 >gi|255026327|ref|ZP_05298313.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL J2-003] Length = 227 Score = 273 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 75/226 (33%), Positives = 126/226 (55%), Gaps = 8/226 (3%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73 + H VLL + + +L P + +DAT G G+S ++ A D+D A+ Sbjct: 1 MFKHETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDN 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + + DY ++ + +A F +++ + ++G VDG+++DLGVSS Q+D +RGFS+ + Sbjct: 61 AKIKLADYSDKVTFIKANFRDMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQD 120 Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 LDMRM ++A VVN+ + +DL RI GEEK + +IA I +RR+ P +TT Sbjct: 121 AALDMRMDQEQELTAKTVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTG 180 Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234 +L +I+ + ++ HP R+FQA+RI VN+E+ + L Sbjct: 181 ELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEK 226 >gi|323485088|ref|ZP_08090441.1| hypothetical protein HMPREF9474_02192 [Clostridium symbiosum WAL-14163] gi|323401644|gb|EGA93989.1| hypothetical protein HMPREF9474_02192 [Clostridium symbiosum WAL-14163] Length = 348 Score = 273 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 98/315 (31%), Positives = 159/315 (50%), Gaps = 28/315 (8%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 +G H+ + +++++ L PG+ LDAT G GG++++ + ++ LD D Sbjct: 47 PVGMHISICVKEILEFLQIQPGQKGLDATLGYGGHTQAILECLQGKGHIYGLDVDAVEQE 106 Query: 73 CGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQ 128 ++ + E ++ + F+ + + G D V+ DLGVSSMQID DRGFS++ Sbjct: 107 KTRKRLEALGYGPELLTVRKLNFANIDQVAAEAGTFDFVLADLGVSSMQIDNPDRGFSYK 166 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV-KRRQSAPFQ 186 GPLD+R+ GISA++ + + ++L +L +E A+ I+ A++ RR+ Sbjct: 167 NEGPLDLRLDSEKGISAAERLKDISREELEGMLAENSDEPYAAEISRAVISARRKGTAID 226 Query: 187 TTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 TT L LI++ + F K R+FQALRI VN+E E L + L L Sbjct: 227 TTTKLRRLIEEALSFLPEGERKEAVKKSCQRTFQALRIDVNSEFEVLEEFLEKLPDILSP 286 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 GG +++FHS EDRLVKK F + V+ I +V+ PT E+ Sbjct: 287 GGRAAILTFHSGEDRLVKKSFKRLKKQG--------------VYSEIADEVIRPTAEECN 332 Query: 302 FNRRSRSAKLRAGMR 316 N R+RS K+R ++ Sbjct: 333 MNSRARSTKMRWAVK 347 >gi|223935232|ref|ZP_03627150.1| S-adenosyl-methyltransferase MraW [bacterium Ellin514] gi|223896116|gb|EEF62559.1| S-adenosyl-methyltransferase MraW [bacterium Ellin514] Length = 353 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 96/316 (30%), Positives = 159/316 (50%), Gaps = 29/316 (9%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72 G H + + +++ +L P PG++ +DAT G GG++ + G ++ LD DP + Sbjct: 51 PAGSHRSICVREIMEVLAPKPGEIAVDATLGYGGHALEILRAIQPGGRLVGLDVDPMEMP 110 Query: 73 CGQETMRDYK---EQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFS 126 + +R E + ++ F+ L + +G+ G ++ DLG+SSMQID RGF+ Sbjct: 111 KTETRLRSVGAPAESLIIRRSNFAGLPQVLAGEGIPGADIILADLGLSSMQIDNPARGFT 170 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 F+ GPLD+R++ G AS ++ +L RIL +E A +A I++ + P Sbjct: 171 FKFEGPLDLRLNPERGRPASALLATLKEPELIRILQDNADEPDAGLLAKGILQAQLRYPI 230 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPAT-----RSFQALRIFVNNEIEELAQGLRSAEKALK 240 TT L+ +I++ + N+ R FQALRI VN+E L LR+ Sbjct: 231 TTTTGLAEVIREAFRSAHRNKTKDEANTSIRRVFQALRIAVNDEFGALDMFLRNLPGCSN 290 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300 +GG + +++FHS EDR VKK F V+ SI ++++ P++E+ Sbjct: 291 SGGRVAILTFHSGEDRRVKKAFQD--------------GKRAGVYSSIAEEIIRPSREET 336 Query: 301 AFNRRSRSAKLRAGMR 316 N R+ SAKLR +R Sbjct: 337 RSNPRASSAKLRWAIR 352 >gi|116515077|ref|YP_802706.1| S-adenosyl-dependent methyl transferase [Buchnera aphidicola str. Cc (Cinara cedri)] gi|122285527|sp|Q057T6|RSMH_BUCCC RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|116256931|gb|ABJ90613.1| S-adenosyl-dependent methyl transferase [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 307 Score = 273 bits (698), Expect = 4e-71, Method: Composition-based stats. Identities = 105/318 (33%), Positives = 169/318 (53%), Gaps = 37/318 (11%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQE 76 H+PVLL++ I LN + +D TFG GG+++ K + ++D+D +V+ G++ Sbjct: 3 HIPVLLKETINALNIKKNGIYIDGTFGNGGHTKEILKYLGQSGKLYSIDQDIKSVNKGKK 62 Query: 77 TMRDYKEQFSLFQATFSQLQDYV----PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 ++FS+ FS+ Y+ K +DG++ DLG+SS QI+ DRGFSF K+G Sbjct: 63 I---KDKRFSIIFGKFSKKIPYIYKKNKKKKIDGILLDLGISSNQINQNDRGFSFMKNGL 119 Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM+ +GI A + +++ K++ ++L GEE+ + +I++AI R + T DL Sbjct: 120 LDMRMNNTTGIPAWKWLKKSSQKEIEKVLRKYGEERYSKKISYAIYNRNKKKTITQTLDL 179 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I+K + + HPATR+FQA+RI +NNEI+EL + L+ + K LK L+++ FH Sbjct: 180 VQIIKKAIP-KIDKYKHPATRTFQAIRIHINNEIKELKKTLKISIKILKKKRRLVIICFH 238 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK--------------KVVVPTQ 297 SLE+R+VK FF R + + ++ K Sbjct: 239 SLENRIVKNFFKKHGKTFFIPRGLPITEKKIKKIENKKIKIIKKIKPKKTEIQK------ 292 Query: 298 EDVAFNRRSRSAKLRAGM 315 N+RSRSA LR Sbjct: 293 -----NKRSRSAILRIAE 305 >gi|323693536|ref|ZP_08107740.1| S-adenosyl-methyltransferase MraW [Clostridium symbiosum WAL-14673] gi|323502391|gb|EGB18249.1| S-adenosyl-methyltransferase MraW [Clostridium symbiosum WAL-14673] Length = 348 Score = 272 bits (696), Expect = 5e-71, Method: Composition-based stats. Identities = 97/315 (30%), Positives = 159/315 (50%), Gaps = 28/315 (8%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 +G H+ + +++++ L PG+ LDAT G GG++++ + ++ LD D Sbjct: 47 PVGMHISICVKEILEFLQIQPGQKGLDATLGYGGHTQAMLECLQGKGHIYGLDVDAVEQE 106 Query: 73 CGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQ 128 ++ + E ++ + F+ + + G D V+ DLGVSSMQID DRGFS++ Sbjct: 107 KTRKRLEALGYGPELLTVRKLNFANIDQVAAEVGTFDFVLADLGVSSMQIDNPDRGFSYK 166 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV-KRRQSAPFQ 186 GPLD+R+ GISA++ + + ++L +L +E A+ I+ A++ RR+ Sbjct: 167 NEGPLDLRLDSEKGISAAERLKDISREELEGMLAENSDEPYAAEISRAVISARRKGTAID 226 Query: 187 TTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 TT L L+++ + F K R+FQALRI VN+E E L + L L Sbjct: 227 TTTKLRRLVEEALSFLPEGERKEAVKKSCQRTFQALRIDVNSEFEVLEEFLEKLPDILSP 286 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 GG +++FHS EDRLVKK F + V+ I +V+ PT E+ Sbjct: 287 GGRAAILTFHSGEDRLVKKSFKRLKKQG--------------VYSEIADEVIRPTAEECN 332 Query: 302 FNRRSRSAKLRAGMR 316 N R+RS K+R ++ Sbjct: 333 MNSRARSTKMRWAVK 347 >gi|315453816|ref|YP_004074086.1| putative S-adenosyl-L-methionine-dependent methyltransferase mraW [Helicobacter felis ATCC 49179] gi|315132868|emb|CBY83496.1| putative S-adenosyl-L-methionine-dependent methyltransferase mraW [Helicobacter felis ATCC 49179] Length = 288 Score = 272 bits (696), Expect = 5e-71, Method: Composition-based stats. Identities = 100/306 (32%), Positives = 160/306 (52%), Gaps = 32/306 (10%) Query: 19 DHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSC 73 H VLL++VI P A +++D T G GG+S + + ++ I +DRD A S Sbjct: 1 MHQSVLLQEVIQAFAPLAQARDPLLIDCTLGLGGHSLTLLQTYPHLRIIGIDRDLEASSI 60 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGV----DGVVFDLGVSSMQIDCGDRGFSFQK 129 ++ + + +F+ T++++ + D+G+ GV+ DLGVSS+Q+D RGF F Sbjct: 61 AEQRLALHASRFTYRYGTYAEVIAQLIDEGIWQNCHGVLADLGVSSLQLDNPSRGFGF-A 119 Query: 130 SGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 S LDMRM + + A V+N ++ DL ++L GE + A +IAH IV RR FQ+ Sbjct: 120 SHTLDMRMDTQASLDAFKVINHYSLYDLEQVL-EKGEVRGAKKIAHLIVNRRHKCLFQSG 178 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 +L+ + + + + HPAT FQA+R+ VN EI+ L L +++ L ++ Sbjct: 179 MELAEFLSQHL---RRTHHHPATLVFQAVRMEVNAEIQNLRALLEYSKQL--QNAHLAII 233 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHSLEDR VK F + ++KK + P ++++ N RSRS Sbjct: 234 SFHSLEDREVKHTFKEYAKSYGVC---------------LSKKPITPCKQEIQDNPRSRS 278 Query: 309 AKLRAG 314 AK+R Sbjct: 279 AKMRIF 284 >gi|219128094|ref|XP_002184257.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217404488|gb|EEC44435.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 290 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 104/297 (35%), Positives = 149/297 (50%), Gaps = 34/297 (11%) Query: 39 VILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95 + +D T G GG+S + + G V D DP A++ E + Sbjct: 1 LFIDGTLGGGGHSAALLQRLQPGDVVFGCDVDPAALATASER-----------TGNDATT 49 Query: 96 QDYVPD--KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC----SGISASDVVN 149 +P GVDG++ DLGVSS QID +RGF+F K GPLDMRM +G++A+D+ N Sbjct: 50 NLVLPPTCPGVDGILLDLGVSSHQIDTAERGFAFMKDGPLDMRMGQQNLHTGLTAADICN 109 Query: 150 QANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVY-----FSKN 204 + + +L RIL G+E +A IAH+IV+ R P QTT DL + V + Sbjct: 110 EFDEVELRRILKTYGDEPRAKSIAHSIVQSR---PLQTTNDLVEAVSAVVPQFARKGKRL 166 Query: 205 NRIHPATRSFQALRIFVNNEIEELAQGLRS-AEKALKAGGLLIVVSFHSLEDRLVKKFFA 263 R+ R FQ+LRI VN E + L Q L A L+ GG L+V+S+ S+EDR K+ Sbjct: 167 GRMSTLARVFQSLRIVVNQEDKVLEQALVDMAPTLLRPGGRLVVLSYQSMEDRSTKRVMR 226 Query: 264 S---RSGKVMAVRHMIPS-NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 R + M + P F ++ K+ T+E++A N R+RSA LR R Sbjct: 227 DGMTRKKTHSDEKDMYGNYCGAPRPFLALGKR-QKATEEEIAGNPRARSATLRVAER 282 >gi|169839498|ref|ZP_02872686.1| S-adenosyl-methyltransferase MraW [candidate division TM7 single-cell isolate TM7a] Length = 339 Score = 268 bits (686), Expect = 9e-70, Method: Composition-based stats. Identities = 119/307 (38%), Positives = 163/307 (53%), Gaps = 29/307 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 HVPVLL + L P P + LD T G GG++ +F S+ + +DRD A++ Sbjct: 18 HVPVLLSASLDLFKPQPKERYLDLTAGYGGHAEAFLNKTQSYSSAVLVDRDENAIAE-LG 76 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 +L A F + G D ++ DLGVSS Q+D GDRGFSF GPLD Sbjct: 77 RFSALGA--TLINADFVSAAKQLVSVGEKFDVIMVDLGVSSPQLDNGDRGFSFMYDGPLD 134 Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEK--QASRIAHAIVKRRQSAPFQTTQDL 191 MRM SA+D+VN + L IL GEE+ A RIA I KRR PF T +L Sbjct: 135 MRMDQRQKFSAADIVNSYPKQKLIEILVRYGEERLSFAKRIADEIYKRR---PFTKTSEL 191 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + +I + ++ +IHPATR+FQALRI VN E+ ++ L + L +GG + ++SFH Sbjct: 192 AKMIVE-IHRGGWQKIHPATRTFQALRIEVNQELAQIESLLPLLLQLLNSGGRVGIISFH 250 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV-VPTQEDVAFNRRSRSAK 310 SLEDRLVK+FF SG + + + KK + T + A+N RSRSAK Sbjct: 251 SLEDRLVKRFFKDNSGLSF-----------ESELELLNKKPLDGATYD--AYNPRSRSAK 297 Query: 311 LRAGMRT 317 LR ++ Sbjct: 298 LRGALKN 304 >gi|241998832|ref|XP_002434059.1| SAM dependent methyltransferase, putative [Ixodes scapularis] gi|215495818|gb|EEC05459.1| SAM dependent methyltransferase, putative [Ixodes scapularis] Length = 368 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 100/351 (28%), Positives = 154/351 (43%), Gaps = 41/351 (11%) Query: 5 SCKTMSSAIHHTIGD---HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN- 60 K MSSA+ + H PV+L +VI LN G+ ++D TFGAGG+S++ + Sbjct: 18 KAKQMSSAVSQLETERFTHTPVMLTEVIDALNVQDGQTLIDFTFGAGGHSKALLSAAKDV 77 Query: 61 -VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG-----VDGVVFDLGVS 114 V +DRDP A +Y + + FS++++ + G VDG + D G S Sbjct: 78 KVFGVDRDPTAYRAACSIATEYPGRLFPVLSRFSEVEETLEQLGVQPNSVDGAILDCGCS 137 Query: 115 SMQIDCGDRG-------FSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEK 167 SMQ D RG F LD S ++ +++V +I Sbjct: 138 SMQFDDPSRGSIHGIMKFPLNLCVKLDCLRHPSSYVIGTLLYKSSVDIKKQIQKYFSNAS 197 Query: 168 QASRIAHAIV---------KRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALR 218 A + + +R QS + SL ++ + H AT++F ALR Sbjct: 198 TAETLCGNVFESLIVLSRNERHQSWVGAGQLYIGSLGERRDMLGRPT--HLATKTFMALR 255 Query: 219 IFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPS 278 IFVN+E+ EL L + L+ GG L V+SFHSLEDRLVK+ F + Sbjct: 256 IFVNDELNELNHALTVGRRLLRPGGRLAVLSFHSLEDRLVKRHFQGIDLDEPVSGSIAQK 315 Query: 279 NAHPAVFQ-----SITKK----VV----VPTQEDVAFNRRSRSAKLRAGMR 316 + A + + ++ + +P+ ++V N RSRSAKLR + Sbjct: 316 YRNAATWHGREEMEVARRRVWEPIGTLGLPSAQEVERNPRSRSAKLRVAAK 366 >gi|213423591|ref|ZP_03356571.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 237 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 97/238 (40%), Positives = 146/238 (61%), Gaps = 13/238 (5%) Query: 90 ATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISA 144 FS L DYV ++ +DG++ DLGVSS Q+D +RGFSF + GPLDMRM + G SA Sbjct: 1 GPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFMRDGPLDMRMDPTRGQSA 60 Query: 145 SDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKN 204 ++ + A D+ +L GEE+ A RIAHAIV+R + P T++L+ ++ K+ Sbjct: 61 AEWLQTAEEADIAWVLKTFGEERFAKRIAHAIVERNREQPMTRTKELAEVVAAATPV-KD 119 Query: 205 NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFAS 264 HPATR+FQA+RI+VN+E+EE+ Q L+S+ L +GG L ++SFHSLEDR+VK+F Sbjct: 120 KFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLASGGRLSIISFHSLEDRIVKRFMRE 179 Query: 265 RSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 +S + + A +++ K ++P +++VA N R+RS+ LR RT Sbjct: 180 QSRGPQVPAGLPMTEAQLKKLGGRELRALGK--LMPGEKEVAENPRARSSVLRIAERT 235 >gi|119588675|gb|EAW68269.1| methyltransferase 5 domain containing 1, isoform CRA_d [Homo sapiens] Length = 345 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 109/323 (33%), Positives = 159/323 (49%), Gaps = 76/323 (23%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H+PV++++V+ L+P G++ LD TFG+GG++++ + S+ + ALDRDP A + + Sbjct: 72 HIPVMVDEVVHCLSPQKGQIFLDMTFGSGGHTKAILQKESDIVLYALDRDPTAYALAEHL 131 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 Y +Q FSQ + + GV DGV+ DLG SSMQ+D +RGFS +K GP Sbjct: 132 SELYPKQIRAMLGQFSQAEALLMKAGVQPGTFDGVLMDLGCSSMQLDTPERGFSLRKDGP 191 Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 LDMRM + ++ T +DL Sbjct: 192 LDMRMDGAFPPSA---------------------------------------IYTRKDLL 212 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 H AT++FQALRIFVNNE+ EL GL++A+K L+ GG L+ +SFHS Sbjct: 213 Q-----------RSTHIATKTFQALRIFVNNELNELYTGLKTAQKFLRPGGRLVALSFHS 261 Query: 253 LEDRLVKKFF-------------------ASRSGKVMAVRHMIPSNAHPAVFQSITKKVV 293 LEDR+VK+F S+ G + P +++ I KKV+ Sbjct: 262 LEDRIVKRFLLGISMTERFNLSVRQQVMKTSQLGSDHENTEEVSMRRAPLMWELIHKKVL 321 Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316 P +DV N R RSAKLRA ++ Sbjct: 322 SPQDQDVQDNPRGRSAKLRAAIK 344 >gi|218508691|ref|ZP_03506569.1| S-adenosyl-methyltransferase MraW [Rhizobium etli Brasil 5] Length = 227 Score = 267 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 123/227 (54%), Positives = 156/227 (68%), Gaps = 1/227 (0%) Query: 116 MQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175 MQ+D +RGFSFQK+GPLDMRMS +G+SA+DVVN+A V DL RI LGEE QA RIAHA Sbjct: 1 MQLDEAERGFSFQKNGPLDMRMSATGVSAADVVNRAKVADLIRIFHFLGEESQAPRIAHA 60 Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 I KRR PF+TT+DL+ LI+ ++IHPATR FQALRIFVN+E+ ELAQ L +A Sbjct: 61 IEKRRAEKPFETTRDLAGLIELVTPRKMKDKIHPATRVFQALRIFVNDELGELAQALFAA 120 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295 E LK GG L+VV+FHSLEDR+VKKFF+ R+GK RH+ ++ A F ++ K +V Sbjct: 121 ETVLKPGGRLVVVTFHSLEDRIVKKFFSDRAGKASGSRHLPAAHERAATFTTVGKSMVSA 180 Query: 296 TQEDVAFNRRSRSAKLRAGMRT-VERSIEDDSFVHLPRLPTLSQFRG 341 ++ + N R+RSAKLRAG RT D S P L +L + G Sbjct: 181 SEAEAESNPRARSAKLRAGQRTAAAAEAADMSLFGFPNLASLGKLGG 227 >gi|255076257|ref|XP_002501803.1| MraW methylase/RNA recognition motif protein [Micromonas sp. RCC299] gi|226517067|gb|ACO63061.1| MraW methylase/RNA recognition motif protein [Micromonas sp. RCC299] Length = 744 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 98/341 (28%), Positives = 149/341 (43%), Gaps = 20/341 (5%) Query: 12 AIHHTIGDHVPVLLEKVIALL-NPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRD 67 A G H P +L + IA L P P +D TFG GG++R + A D D Sbjct: 354 ATEQAFGTHTPAMLRETIAALVKPDPNGTYVDGTFGRGGHTRGILAALGPNGRLHAFDMD 413 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV--DGVVFDLGVSSMQIDCGDRGF 125 P A+ + + +F++ A F + + GV GV DLG+SS Q D RGF Sbjct: 414 PEAIKEA-KKLEAEDSRFTIHHAPFGCMDTVLKPLGVTCSGVFLDLGISSPQFDDESRGF 472 Query: 126 SFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQA---SRIAHAIVKRRQ 181 ++ GPLD+R G+ AS+ + + + +L RIL GE RIA A+ Sbjct: 473 RPEQDGPLDLRFDVTQGVPASEFLERVDRDELVRILHEYGETADPVAARRIADAVCLAVA 532 Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 +T + + + +HPA +FQALRI +N E +E+ +G+R+A + + Sbjct: 533 EERLPSTTKAFAALVAAAKGKEYQAMHPAKLTFQALRIHLNQEFDEMRRGMRAAAEVMID 592 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRS--------GKVMAVRHMIPSNAHPAVFQSITKKVV 293 GG L V+++ E ++ F K M H NA P V+ Sbjct: 593 GGRLGVLTWKHSECAILVDFHRHFEVVQPTQPLLKWMRSNHPEKENALPTVWGLTMDDAQ 652 Query: 294 VPTQEDVAFNRRSRSAKLRAGMRTVE-RSIEDDSFVHLPRL 333 P++ ++ N RSRSA L + R + D P L Sbjct: 653 RPSEREMRDNSRSRSAILHVLRKVDAGRRLADVERAAYPLL 693 >gi|289810554|ref|ZP_06541183.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 231 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 90/230 (39%), Positives = 135/230 (58%), Gaps = 12/230 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ Q Sbjct: 6 KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAQ 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +FS+ FS L DYV ++ +DG++ DLGVSS Q+D +RGFSF + G Sbjct: 66 TI---NDPRFSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFMRDG 122 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 PLDMRM + G SA++ + A D+ +L GEE+ A RIAHAIV+R + P T++ Sbjct: 123 PLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIAHAIVERNREQPMTRTKE 182 Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ Q + + + Sbjct: 183 LAEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQATKKLAQRTR 231 >gi|126643217|ref|YP_001086201.1| S-adenosylmethionine methyltransferase [Acinetobacter baumannii ATCC 17978] Length = 223 Score = 265 bits (679), Expect = 5e-69, Method: Composition-based stats. Identities = 85/226 (37%), Positives = 129/226 (57%), Gaps = 8/226 (3%) Query: 97 DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKD 155 + + VDG++ DLGVSS Q+D +RGFSF + GPLDMRM S G++A++ + + +D Sbjct: 2 QEIGVQSVDGIMADLGVSSPQLDQAERGFSFMQDGPLDMRMDNSKGLTAAEWLLEVEEED 61 Query: 156 LTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQ 215 L I+ GEE+ + RIA AI + TT L+ +++ + ++ HPATR+FQ Sbjct: 62 LANIIYQYGEERYSRRIARAIKQA---GKLDTTAQLAEIVKTAHPKWEKHK-HPATRTFQ 117 Query: 216 ALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM 275 A+RI +N E++++ L A LK G L V+SFHSLEDRL+K+F S Sbjct: 118 AIRIAINKELDDIEVFLPQAVDLLKPKGRLSVISFHSLEDRLIKQFIQKESTLAEDSGWG 177 Query: 276 IPSNA-HPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVER 320 +P + I++ V ++E+V N RSRSA LR R ++ Sbjct: 178 MPQQQVDTRRLKKISR--VRASEEEVKANPRSRSAWLRVAERLEQK 221 >gi|262276873|ref|ZP_06054666.1| S-adenosyl-methyltransferase MraW [alpha proteobacterium HIMB114] gi|262223976|gb|EEY74435.1| S-adenosyl-methyltransferase MraW [alpha proteobacterium HIMB114] Length = 329 Score = 265 bits (677), Expect = 9e-69, Method: Composition-based stats. Identities = 110/305 (36%), Positives = 164/305 (53%), Gaps = 7/305 (2%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76 H PV+L +V L+ K+ILD TFG GGYS K SN VIA+DRD + ++ Sbjct: 7 KHYPVMLREVTNFLS--DNKLILDCTFGGGGYSSEILKNYSNSKVIAIDRDIEIIQFAKK 64 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + Y ++F FS++ +D +FDLGVS Q+ RGFSF L M Sbjct: 65 LEKKYLKRFVFKNLKFSEIHKVKEINQIDYFIFDLGVSHFQLKDMKRGFSFSSDDSLSMS 124 Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 M + + A +++ + + KDL IL GEEK AS+IA+ I+ R++ + + L+ +I+ Sbjct: 125 MGLTDLDAEELIRKVSEKDLKNILKFFGEEKFASKIANKIINVRKNKNISSGKKLAEIIE 184 Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 K N+ HP+T+SFQALR+ VN E+ E+ + L+ + K +I+V+FHSLED Sbjct: 185 TV--KFKKNKTHPSTKSFQALRMIVNQELLEIYKSLKFIIENCKENSTIIIVTFHSLEDL 242 Query: 257 LVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 LVKK K R++ S+ + +T K + P E+V N SRSAKLRA Sbjct: 243 LVKKIINFYGKKTSTSRYLPQDSDIKKMPIKILTNKAIKPNSEEVNVNPSSRSAKLRAFT 302 Query: 316 RTVER 320 + + Sbjct: 303 KICKP 307 >gi|171915286|ref|ZP_02930756.1| S-adenosyl-methyltransferase MraW [Verrucomicrobium spinosum DSM 4136] Length = 352 Score = 263 bits (673), Expect = 3e-68, Method: Composition-based stats. Identities = 100/330 (30%), Positives = 165/330 (50%), Gaps = 34/330 (10%) Query: 3 SKSCKTMS---SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-- 57 + T++ ++ G H+P++L +++ +L P PG+ LD T G GG++ + + Sbjct: 40 ERYADTVAKVRASGKTPAGQHIPIMLPEILEVLAPQPGERALDCTLGYGGHAEALLRAVQ 99 Query: 58 -GSNVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPD----KGVDGVVF 109 ++ LD+D + ++ + + F+ L+ + + G D ++ Sbjct: 100 PDGCLMGLDQDAIEIEKTGARLKALGFPEATLRVVRMNFAGLRKALDEAAWSDGADVILA 159 Query: 110 DLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQ 168 DLGVSSMQID RGFSF+ GPLDMRM+ G+ A +++ + +V LT +L +E Sbjct: 160 DLGVSSMQIDNPARGFSFKSDGPLDMRMNPLRGVPARELLRKISVPKLTALLEENADETN 219 Query: 169 ASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPAT--RSFQALRIFVNNEIE 226 + +A A+ F T L++ +++ + + AT R FQALRI VN+E Sbjct: 220 SILLAAAL----AGQDFAKTPTLAAAVKRALPRHLDEEEVTATTRRVFQALRIAVNDEFG 275 Query: 227 ELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ 286 L LR AL+ GG + V++FHS EDR VKK F + S F Sbjct: 276 ALDSFLRVLPTALRPGGRVAVLTFHSGEDRRVKKAFLAGSRDG--------------TFS 321 Query: 287 SITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 +I+ +V P+ E++ N R+ SAKLR +R Sbjct: 322 AISDEVQRPSPEEIRLNTRAASAKLRWAVR 351 >gi|303278410|ref|XP_003058498.1| MraW methylase/RNA recognition motif protein [Micromonas pusilla CCMP1545] gi|226459658|gb|EEH56953.1| MraW methylase/RNA recognition motif protein [Micromonas pusilla CCMP1545] Length = 875 Score = 262 bits (671), Expect = 4e-68, Method: Composition-based stats. Identities = 96/327 (29%), Positives = 153/327 (46%), Gaps = 26/327 (7%) Query: 14 HHTIGDHVPVLLEKVIALL-NPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69 G H P +L + I L P V +D TFG GG+SR + A D DP Sbjct: 483 DQAHGTHTPAMLRETIDALVAPNRDGVYVDGTFGRGGHSRGILAALSNRGRLHAFDMDPE 542 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV--DGVVFDLGVSSMQIDCGDRGFSF 127 A++ + + +F++ A F + + KGV GV DLG+SS Q D RGF Sbjct: 543 AIAEA-KKLEAEDARFTIHHAPFGCMDTVLKPKGVVVAGVFLDLGISSPQFDDASRGFRP 601 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQA---SRIAHAIVKRRQSA 183 ++ GPLD+R + GI ASD + + DL R++ GE A R+A A+ R++ Sbjct: 602 EQDGPLDLRFDVTRGIPASDYLRRVERDDLARVIETYGETADATAARRVADAVCLARETG 661 Query: 184 PF--QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 TT+ +SL+ + + +HPA +FQALRI +N E +E+ +G+R+A + ++ Sbjct: 662 EGVPSTTKAFASLVARA-KGQEYQAMHPAKLTFQALRIELNQEFDEMRRGMRAAVEVMED 720 Query: 242 GGLLIVVSFHSLEDRLVKKFFAS-RSGKVMAVRHMIPSNAHPAV-----------FQSIT 289 GG L V+++ E ++ FF + + HP+V + Sbjct: 721 GGRLGVLTWKHSECAILVDFFRHVEETRPDLPLARFLEDRHPSVAAEVALANSDGWALTA 780 Query: 290 KKVVVPTQEDVAFNRRSRSAKLRAGMR 316 P++++ N RSRSA L + Sbjct: 781 DDAKRPSEKETRENSRSRSAILHVLRK 807 >gi|47230508|emb|CAF99701.1| unnamed protein product [Tetraodon nigroviridis] Length = 437 Score = 262 bits (671), Expect = 4e-68, Method: Composition-based stats. Identities = 124/388 (31%), Positives = 177/388 (45%), Gaps = 83/388 (21%) Query: 12 AIHHTIGDHVPVLLEKVIALLNPAPGK----------VILDATFGAGGYSRSFCKMGS-- 59 ++ H PV+L++V+ L+ PG+ V+LD TFG GG++++ M Sbjct: 49 SVSAENPPHTPVMLKEVLHYLDIQPGQGEGSRLSIFHVVLDMTFGGGGHTKAILSMVPEV 108 Query: 60 NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD-----KGVDGVVFDLGVS 114 V+ALDRDP A+S ++ ++ Q + FSQL + D VD V+ D G S Sbjct: 109 KVLALDRDPTAISLAEKLAKESSGQVTPLLGRFSQLDVLLSDLKVKPGSVDAVLLDAGCS 168 Query: 115 SMQIDCGDRGFSFQKSGPLDMRMS--------------------------------CSGI 142 SMQ+D +RGFS K GPLDMRM Sbjct: 169 SMQMDQAERGFSLSKDGPLDMRMDGESRISELSAFATVSKDMTSSSLIGLCFVRRYPEMP 228 Query: 143 SASDVVNQA-NVKDLTRILGILGEE--------------KQASRIAHAIVKR-------R 180 SA+DVVN + G+ G E Q A +R + Sbjct: 229 SAADVVNTPGSTGSCIHHHGLRGGEMGRENRFSHCGGTSHQPHHPDAAAGQRGGSGQTVK 288 Query: 181 QSAPFQTTQDLSSLIQKTVYFSK---NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 + P Q+ + SL Y K H AT++FQAL IFVN+E++EL GLR+A + Sbjct: 289 RLRPQQSARRFRSLPAAVAYARKDRLRRPAHAATKTFQALCIFVNDELKELHAGLRAARE 348 Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRS------GKVMAVRHMIPSNAHPAV---FQSI 288 AL+ GG L V++FHSLEDRLVK+F + +P + A + + Sbjct: 349 ALRPGGRLCVITFHSLEDRLVKRFLRGHDLAHSDQQLFRPGKRDLPKETNTAESAHWLLL 408 Query: 289 TKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 +KV+ P ++DV N R RSAKLRA +R Sbjct: 409 RRKVIAPERDDVRDNPRGRSAKLRAALR 436 >gi|322379450|ref|ZP_08053820.1| S-adenosyl-methyltransferase MraW [Helicobacter suis HS1] gi|322380939|ref|ZP_08055005.1| S-adenosyl-methyltransferase MraW [Helicobacter suis HS5] gi|321146611|gb|EFX41445.1| S-adenosyl-methyltransferase MraW [Helicobacter suis HS5] gi|321148159|gb|EFX42689.1| S-adenosyl-methyltransferase MraW [Helicobacter suis HS1] Length = 303 Score = 262 bits (670), Expect = 6e-68, Method: Composition-based stats. Identities = 98/303 (32%), Positives = 156/303 (51%), Gaps = 33/303 (10%) Query: 20 HVPVLLEKVIALLN----PAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSC 73 H VLLE+V+A+ V++D T G GG++ + + N+ + ++RD A Sbjct: 21 HQSVLLEEVVAIFQEVIQSHSEPVLIDCTLGLGGHTLALLQTYPNLRVVGIERDKEASEQ 80 Query: 74 GQETMRDYKEQFSLFQATFS-QLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 E + + +FS F+ L + + + GV+ DLGVSS+Q+D DRGFSF Sbjct: 81 ALEKLTPFAHRFSFKSGNFATILPSLLKENRICGVLADLGVSSLQLDHLDRGFSFNAP-T 139 Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + AS V+N + L +IL GE ++A+ IV+ R PF + +D Sbjct: 140 LDMRMDIDQSLDASKVINTYSAYALEKIL-QAGEVYAPKKMANLIVQNR---PFYSAKDF 195 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + I + S++++ HPAT FQA+R+ VN+E+ L Q L + ++ ++SFH Sbjct: 196 ADFISQH---SRHSKHHPATLIFQAIRMEVNSEMHNLDQLLECVQSL--KEAIVCIISFH 250 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR VK F + + KK ++P+++ + NRR+RSAK+ Sbjct: 251 SLEDRKVKHAFKEWAQN---------------RGVLLFKKPIIPSKKAIQENRRARSAKM 295 Query: 312 RAG 314 RA Sbjct: 296 RAF 298 >gi|269469017|gb|EEZ80581.1| S-adenosylmethionine-dependent methyltransferase [uncultured SUP05 cluster bacterium] Length = 233 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 90/219 (41%), Positives = 134/219 (61%), Gaps = 7/219 (3%) Query: 103 GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILG 161 +DG++ DLGVSS Q+D RGFSF GPLDMRM + G+SA+ + AN ++ +L Sbjct: 13 KIDGILMDLGVSSPQLDNAQRGFSFNHDGPLDMRMDQTQGMSAAQWLTSANETEIADVLY 72 Query: 162 ILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFV 221 GEE+++ RIA AI + +Q TT L+++I + KN HPATRSFQA+RIF+ Sbjct: 73 QYGEERKSRRIASAIKRYQQDKSIDTTLQLANIIASVIKTQKN--KHPATRSFQAIRIFI 130 Query: 222 NNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVR--HMIPSN 279 N E+++L++ L + L GG L+V+SFHS+EDR+VK+F S + A + ++ S Sbjct: 131 NQELKQLSETLDQIIELLACGGRLVVISFHSIEDRIVKQFIQKHSRQKQAPKGLPVMDSE 190 Query: 280 AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318 + + KK ++E++ N+RSRSA LR RT Sbjct: 191 FKKTALKDLGKK--FASKEELQTNKRSRSAILRTAQRTE 227 >gi|321310206|ref|YP_004192535.1| rRNA small subunit methyltransferase H [Mycoplasma haemofelis str. Langford 1] gi|319802050|emb|CBY92696.1| rRNA small subunit methyltransferase H [Mycoplasma haemofelis str. Langford 1] Length = 301 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 91/305 (29%), Positives = 161/305 (52%), Gaps = 13/305 (4%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRD 80 + ++V++ L + + LD TFGAGG+SR S +I LD D AV G + + Sbjct: 1 MSDEVVSYLLGSKDGLYLDCTFGAGGHSRQLLSKISSQSKLIGLDIDSVAVEMG-KKLEQ 59 Query: 81 YKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 ++FS+ + F++L DY + + G++FDLG S MQ+ RGFS+ + LDMRM Sbjct: 60 EDDRFSMVRLNFARLSDYQKENNLPKARGIIFDLGTSMMQLRDPSRGFSYLEDAHLDMRM 119 Query: 138 SC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP-FQTTQDLSSLI 195 S +A+D++N + L I G+ + R+ + I R+ +TT + LI Sbjct: 120 DQTSKTTAADILNYGSRMQLKDIFRKYGDIHNSDRLINLISDHRKKYSCIETTLEFRDLI 179 Query: 196 QKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 ++ R +R+FQA+RI VN+EI+ + S + L+ GG+ +++FHS E Sbjct: 180 EEAHKKLDPVRLRKEISRTFQAIRIAVNDEIKSFEMAMNSLHEVLEVGGVACIITFHSGE 239 Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 + ++K + S+ + +R + + F+ ++ +VPT++++A NR SRS+KL Sbjct: 240 EDVLKTW-KSKYCDHIEIRDYSKNMVNK--FRFVSNGYIVPTEKEIAENRSSRSSKLWVF 296 Query: 315 MRTVE 319 + + Sbjct: 297 QKVRD 301 >gi|5834377|gb|AAD53943.1|AF179611_27 conserved hypothetical protein [Zymomonas mobilis subsp. mobilis ZM4] Length = 276 Score = 257 bits (658), Expect = 2e-66, Method: Composition-based stats. Identities = 113/272 (41%), Positives = 161/272 (59%), Gaps = 8/272 (2%) Query: 67 DPFAVSCGQETMRDYKEQFSLFQATFSQL---QDYVPDKGVDGVVFDLGVSSMQIDCGDR 123 DP A+ G + YK + L FS + D + K VDG+VFD+GVSSMQID +R Sbjct: 1 DPDAIREGASLVEKYKGRLRLVNDCFSNIGHHLDALDIKTVDGMVFDIGVSSMQIDRPER 60 Query: 124 GFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 GFS Q GPLDMRM+ +G+SA +++N A KD+ +L + GEE+Q+ R+A AIV R +A Sbjct: 61 GFSIQADGPLDMRMAQAGLSAEELLNNAQEKDIADVLYLYGEERQSRRVATAIV--RGTA 118 Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 + L+ +I++++ + ++ PA FQA+RI +N E++EL GL++AE+ LK G Sbjct: 119 FKRRLFRLAKVIRQSLGYRPFDKKDPAAHCFQAIRIHLNRELDELKDGLQTAERFLKTKG 178 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302 L VV+FHSLEDR+VK F +G+ RH VF S + V + ++A Sbjct: 179 CLAVVTFHSLEDRIVKHFMREHAGQTGQVSRHQPVIPQQNPVFFSKPARPVRAGETELAR 238 Query: 303 NRRSRSAKLRAGMRTVERSIEDDSF--VHLPR 332 N R+RSA LRA RT ED S H+PR Sbjct: 239 NPRARSATLRAVYRTETPFSEDISRPDTHIPR 270 >gi|304163|gb|AAC36835.1| Putative product of orfB has significant sequence identity to putative product of orfB sequence upstream of pbpB gene in E.coli. putative [Bacillus subtilis] Length = 204 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 78/202 (38%), Positives = 114/202 (56%), Gaps = 3/202 (1%) Query: 118 IDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 +D +RGFS+ PLDMRM S +SA +VVN+ +DL RI GEEK + +IA I Sbjct: 1 LDTPERGFSYHHDAPLDMRMDQSATLSAKEVVNEWRYEDLVRIFFKYGEEKFSKQIARKI 60 Query: 177 VKRRQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 + R +P QTT L LI+ + ++ + HPA R FQA+RI VN+E+ + L A Sbjct: 61 EEARMKSPIQTTGQLVDLIKDAIPAPARRSGGHPAKRVFQAIRIAVNDELRVFEEALEQA 120 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVV 294 + LK GG + V++FHSLEDR+ K F +S + + + IT+K + Sbjct: 121 IEVLKPGGRVSVITFHSLEDRICKTTFKEKSSLPELPPGLPVIPEEFEPELKLITRKPIT 180 Query: 295 PTQEDVAFNRRSRSAKLRAGMR 316 +QE++ N R+RSAKLR + Sbjct: 181 ASQEELEENNRARSAKLRIAEK 202 >gi|260826594|ref|XP_002608250.1| hypothetical protein BRAFLDRAFT_87928 [Branchiostoma floridae] gi|229293601|gb|EEN64260.1| hypothetical protein BRAFLDRAFT_87928 [Branchiostoma floridae] Length = 280 Score = 253 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 94/237 (39%), Positives = 133/237 (56%), Gaps = 20/237 (8%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76 H PV++ +V+ L+P PG+V +D TFGAGG++++ + V A+DRDP A + Q Sbjct: 2 PHTPVMVREVLDCLDPQPGQVYVDMTFGAGGHTKAILAAQPDTVVYAIDRDPAAHNMAQN 61 Query: 77 TMRDYKEQFSLFQATFSQLQDYV-----PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y + FS+L + + VDG +FD+G SSMQ D G RGFS + G Sbjct: 62 IAKQYGKSIRPVLGRFSELLYLLSSQNVQENTVDGFLFDVGASSMQFDQGGRGFSLSQDG 121 Query: 132 PLDMRMSCSG-----ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 PLDMRM +A+DVVN DL I+ GEEK A +I+ AIV R P Sbjct: 122 PLDMRMDGERFGNKQPTAADVVNSLGEDDLYGIIKTYGEEKHARKISSAIVDARNKIPIT 181 Query: 187 TTQDLSSLIQKTVYFSK--------NNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 TT+ L+ ++ + N +HPAT++FQALRIFVN+E+ EL QGL++A Sbjct: 182 TTKQLAGVVASALAPPGVFFAHDKLNRAVHPATKTFQALRIFVNDELNELYQGLQAA 238 >gi|296124253|ref|YP_003632031.1| S-adenosyl-methyltransferase MraW [Planctomyces limnophilus DSM 3776] gi|296016593|gb|ADG69832.1| S-adenosyl-methyltransferase MraW [Planctomyces limnophilus DSM 3776] Length = 378 Score = 252 bits (643), Expect = 8e-65, Method: Composition-based stats. Identities = 91/315 (28%), Positives = 160/315 (50%), Gaps = 28/315 (8%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72 G H P+++++++ +L P G+ +D T G GG+++ + ++ +D DP + Sbjct: 75 PAGTHRPIMVDEILQVLAPQAGERGIDCTLGFGGHAQQLLRAIQPDGCLLGIDADPIELP 134 Query: 73 CGQETMRDYK---EQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFS 126 + +R E + + F+ L +P G D ++ DLG+SSMQID RGF+ Sbjct: 135 KTEARLRSAGFPAETLMVQRTNFAALPGLIPAFLPGGADFLMADLGLSSMQIDDPARGFT 194 Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 F+ PLDMRM+ S G SA++ + + + + L ++L +E A +A ++ +Q + F Sbjct: 195 FKVDAPLDMRMNPSRGPSAAEFLAKIDERGLAKLLEDAADEPCAEPLARGLITAQQISAF 254 Query: 186 QTTQDLSSLIQKTVYF----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241 TT L+ +++ + + + R FQA+RI VN+E L L+S + +K Sbjct: 255 ITTGQLAEAVRRVLATIGSLDEEDVSSTIRRVFQAIRIAVNDEFSTLDILLKSIPQCVKP 314 Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301 GG + +++FHS EDR VKK F + V++ I+ +V+ T ++ Sbjct: 315 GGRIAILTFHSGEDRRVKKAFQAGLASG--------------VYREISSEVMRATPQERH 360 Query: 302 FNRRSRSAKLRAGMR 316 N RS AKLR +R Sbjct: 361 DNPRSIPAKLRWAIR 375 >gi|254671182|emb|CBA08306.1| S-adenosyl-methyltransferase [Neisseria meningitidis alpha153] Length = 249 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 86/214 (40%), Positives = 124/214 (57%), Gaps = 3/214 (1%) Query: 112 GVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQAS 170 G+SS QID G RGFSF+ PLDMRM + G+SA++ + A+ +DL ++ GEE+ + Sbjct: 27 GISSPQIDDGSRGFSFRFDAPLDMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSR 86 Query: 171 RIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQ 230 +IA AIV +R +P TT+ L+ ++ + V + + PATR+FQA+RIF+N E+EE+ Sbjct: 87 QIARAIVAQRAESPIDTTRKLAQIVAQNVRTRERGQ-DPATRTFQAVRIFINRELEEVGA 145 Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSIT 289 L LK GG L V++FHSLEDR+VK+F S R A P I Sbjct: 146 VLPQVMCRLKEGGRLAVIAFHSLEDRIVKQFVKKYSQHAPLPRWAAVREADLPEPPLKIV 205 Query: 290 KKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIE 323 + + P + ++A N R+RSA LR RT E Sbjct: 206 GRALKPGEAEIAANPRARSAVLRVAERTAGPIPE 239 >gi|298711101|emb|CBJ32330.1| S-adenosyl-methyltransferase MraW [Ectocarpus siliculosus] Length = 332 Score = 249 bits (637), Expect = 4e-64, Method: Composition-based stats. Identities = 96/326 (29%), Positives = 144/326 (44%), Gaps = 88/326 (26%) Query: 26 EKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK 82 +V+ L P V +D T G GG+S + G+ VI LDRDP A+ + Sbjct: 4 REVLEWLITKPDGVYVDCTLGGGGHSAALLSALGAGARVIGLDRDPDALREASARLAAEA 63 Query: 83 E--QFSLFQATFSQLQDYVPDKG--------------------------------VDGVV 108 E +F ++ F+ + V + VDG++ Sbjct: 64 EVGRFQAVRSNFAAVGRAVRECELMLQQPPLAPEASTAPAPAAGVPPRTTSAGPLVDGIL 123 Query: 109 FDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSG--------------------------- 141 DLGVSS QID RGFSF GPLDMRM +G Sbjct: 124 VDLGVSSHQIDDEARGFSFSADGPLDMRMEGTGDGDSVGERSGFGGVASTSREHEDRAVE 183 Query: 142 -------------------ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 +SA+DVVN A+ ++ ++ G+EK++++IA AIV+ R Sbjct: 184 KGGRGEGGGGGDGRGGGGGVSAADVVNFADESEIREMVWRYGDEKRSTKIARAIVENR-- 241 Query: 183 APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 P TT L+ ++ + + R+ R FQALRI VN E++ L L A+ ++ G Sbjct: 242 -PIATTGQLAEVVGRCAPPKE--RVKTLARVFQALRIEVNGELDALEALLEQAKHLVRPG 298 Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGK 268 G L+++S+HSLEDR VK+ A+ + K Sbjct: 299 GRLLILSYHSLEDRRVKRVLATGNLK 324 >gi|327330609|gb|EGE72355.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes HL097PA1] Length = 241 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 89/227 (39%), Positives = 123/227 (54%), Gaps = 3/227 (1%) Query: 95 LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANV 153 + D + VD V+ DLG+SS QID +RGFS+ PLDMRM S G +A+ ++N+++ Sbjct: 1 MLDDLGLDYVDSVLLDLGLSSFQIDEVERGFSYSVDSPLDMRMDQSSGRTAAQILNESDP 60 Query: 154 KDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYF--SKNNRIHPAT 211 L R+L GEEK A RI AIV R P +T+ L +I + + + HPA Sbjct: 61 GALVRMLREYGEEKFADRIVRAIVTERDRQPIETSGRLVEIITEAIPATVRRKRHSHPAK 120 Query: 212 RSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMA 271 R+FQALRI VN E+E L L A L GG ++V+S+HSLEDR VK+ F Sbjct: 121 RTFQALRIAVNREMETLPAVLPRALDRLDVGGRIVVLSYHSLEDRPVKEAFRDACADTAP 180 Query: 272 VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318 + + A F +T+ P ++VA N RS SA+LR R Sbjct: 181 AGLPMVPESMAAKFNPVTRGAERPDADEVATNPRSASARLRVIERVR 227 >gi|226328337|ref|ZP_03803855.1| hypothetical protein PROPEN_02231 [Proteus penneri ATCC 35198] gi|225203070|gb|EEG85424.1| hypothetical protein PROPEN_02231 [Proteus penneri ATCC 35198] Length = 216 Score = 247 bits (630), Expect = 3e-63, Method: Composition-based stats. Identities = 93/219 (42%), Positives = 126/219 (57%), Gaps = 10/219 (4%) Query: 108 VFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEE 166 + DLGVSS Q+D +RGFSF + GPLDMRM SG SA+ + A D+T +L GEE Sbjct: 1 MLDLGVSSPQLDDPERGFSFMRDGPLDMRMDPTSGQSAAQWLMTAEEDDITWVLKTFGEE 60 Query: 167 KQASRIAHAIVKRRQ-SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEI 225 + A RIA AIV R + P T+ L+ LI + ++ HPATRSFQA+RI++N+E+ Sbjct: 61 RFAKRIARAIVARNKTEEPLTRTKQLADLISDASPVKERHK-HPATRSFQAIRIYINSEL 119 Query: 226 EELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH---- 281 +E+ + L+ A L G L V+SFHSLEDRLVK+F S + + + A Sbjct: 120 DEIEKALKGAVSVLAPEGRLSVISFHSLEDRLVKRFIRDESKGPVVPAGIPLTEAQIKEL 179 Query: 282 -PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319 A SI K + PT +V N R+RS+ LR R E Sbjct: 180 GSARLSSIHK--MKPTGVEVEENPRARSSVLRVAQRIEE 216 >gi|15639375|ref|NP_218824.1| hypothetical protein TP0384 [Treponema pallidum subsp. pallidum str. Nichols] gi|189025617|ref|YP_001933389.1| hypothetical protein TPASS_0384 [Treponema pallidum subsp. pallidum SS14] gi|8134809|sp|O83399|RSMH_TREPA RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|262825951|sp|B2S2Y1|RSMH_TREPS RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|3322662|gb|AAC65368.1| conserved hypothetical protein [Treponema pallidum subsp. pallidum str. Nichols] gi|189018192|gb|ACD70810.1| hypothetical protein TPASS_0384 [Treponema pallidum subsp. pallidum SS14] gi|291059774|gb|ADD72509.1| S-adenosyl-methyltransferase MraW [Treponema pallidum subsp. pallidum str. Chicago] Length = 379 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 94/330 (28%), Positives = 147/330 (44%), Gaps = 53/330 (16%) Query: 20 HVPVLLEKVIALLNPAPGKV--------------ILDATFGAGGYSRSFCKMGSNVIAL- 64 H PVL+++ + LL PA + +D T G GG++++F + AL Sbjct: 29 HQPVLVQECLTLLEPAIVGISRGADSTRDGAGAFFIDGTLGDGGHTQAFLHAYPALRALG 88 Query: 65 -DRDPFAVSCGQETMRDYKEQFSLFQATFSQL----------------------QDYVPD 101 + DP ++ + + + ++ Sbjct: 89 VEIDPSMLARARARLTPFGKRLRYVLGWSDVFFASAYASAPASPATGRTAAGAAGVPGAY 148 Query: 102 KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRIL 160 V+ DLG+S RGFSF + LDMR+ +A+D++N+ L ++ Sbjct: 149 PAPQAVLLDLGISFFHYRGAMRGFSFAEEHMLDMRLDPQASQTAADLLNRLPQARLAQLF 208 Query: 161 GILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVY------FSKNN-------RI 207 GEE+ A RIA A+ +R+ APF + + + ++ + V F K ++ Sbjct: 209 FEGGEERYARRIAQAVCAQRRQAPFCSARAFAEVVARVVPPMRTARFGKRRGVLGVLPKL 268 Query: 208 HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSG 267 HPAT++FQALRI VN E+E L + L +A AL GG L V+SFHS EDR+VK F + Sbjct: 269 HPATKAFQALRIAVNRELERLPRLLTAAFTALAPGGRLAVISFHSREDRIVKVHFRHWAK 328 Query: 268 KVMAV-RHMIPSNAHPAVFQSITKKVVVPT 296 + R I S A ITKK +VP+ Sbjct: 329 RCSCPARVPICSCGGVARASLITKKPLVPS 358 >gi|71031997|ref|XP_765640.1| S-adenosyl-methyltransferase mraW [Theileria parva strain Muguga] gi|68352597|gb|EAN33357.1| S-adenosyl-methyltransferase mraW, putative [Theileria parva] Length = 389 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 89/294 (30%), Positives = 146/294 (49%), Gaps = 50/294 (17%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 +H+PV+L++ + L P + LD T G GG++ + +I++DRDP +V + Sbjct: 72 EHIPVMLKESMEYLITDPKGLYLDVTLGYGGHTEEILRRLNPKGKLISIDRDPESVYFNR 131 Query: 76 ETMRDYKE--QFSLFQATFSQLQDYVPDK-----GVDG---------------------- 106 + ++ Y E + S+ FS + D + G G Sbjct: 132 KRLKSYIEESRLSVEIGKFSGIIDLLKSHKLPTEGYTGFFLPILLFKLVISTLYLLYKEF 191 Query: 107 -VVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC----------------SGISASDVVN 149 +V DLG+S+ Q++ RGFS+ K+GPLDMRMS S +A +VN Sbjct: 192 RIVADLGLSTHQLENSKRGFSYMKNGPLDMRMSSPLNDPFNPNFKIDVKSSENTAYQLVN 251 Query: 150 QANVKDLTRILGILGEEKQASRIAHAIV-KRRQSAPFQTTQDLSSLIQKTVYFSKNNRIH 208 +++ L +I G+E +A+ IA I+ KRR +T+ L S++ ++ +++ Sbjct: 252 KSDESTLRKIFKEFGQEPRAASIAKKIIEKRRILGEIDSTEKLKSVVMDSLPMFHRSKMR 311 Query: 209 PATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF 262 +R FQALRI VN+E+ EL+ L + LK G + +S+H+LEDRLVK F Sbjct: 312 TLSRIFQALRIKVNDELNELSSFLNFIPQLLKYNGRFVCISYHALEDRLVKNSF 365 >gi|323455669|gb|EGB11537.1| mraW S-adenosyl-L-methionine-dependent methyltransferase-like protein [Aureococcus anophagefferens] Length = 404 Score = 245 bits (627), Expect = 5e-63, Method: Composition-based stats. Identities = 85/313 (27%), Positives = 146/313 (46%), Gaps = 27/313 (8%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVS 72 G HVP+++ + + L V +D T G GG+S + G+ ++ +DRD ++ Sbjct: 104 PAGTHVPIMVAECLEHLRVGDAAVAVDCTLGYGGHSTALVAALPRGARLLGVDRDGEELA 163 Query: 73 CGQETMRDYK----EQFSL--FQATFSQLQDYVPDKG--VDGVVFDLGVSSMQIDCGDRG 124 + + + +L + ++ + D + +G VD ++ DLG SSMQ+D +RG Sbjct: 164 KTAARLAEAPRAASGEVTLEQMHSNYAAVGDELARRGLAVDALLADLGCSSMQVDDPERG 223 Query: 125 FSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 F++++ GPLDMRM S G +A+D + +++ D+ + + A+ RR Sbjct: 224 FTYKREGPLDMRMDTSRGETAADWLARSSTADVAAAFRTAADFGKRDARELAVAARRAPT 283 Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 P TT + ++ + R+ QALR+ VN+E L L S AL GG Sbjct: 284 PATTTA-FAERVRGVALEEETADDDAVKRAMQALRVAVNDEFASLDALLASLPDALAPGG 342 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 +V++FHS EDR VK+ F V+ ++ ++ V + E+ N Sbjct: 343 RAVVLTFHSGEDRRVKQAFKK--------------GLAANVYSAVARRPVRASPEERRAN 388 Query: 304 RRSRSAKLRAGMR 316 RS KLR +R Sbjct: 389 SRSGCCKLRWCVR 401 >gi|118594404|ref|ZP_01551751.1| methyltransferase [Methylophilales bacterium HTCC2181] gi|118440182|gb|EAV46809.1| methyltransferase [Methylophilales bacterium HTCC2181] Length = 213 Score = 245 bits (625), Expect = 9e-63, Method: Composition-based stats. Identities = 87/215 (40%), Positives = 126/215 (58%), Gaps = 6/215 (2%) Query: 109 FDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEK 167 DLG+SS Q+D +RGFSF+ G LDMRM+ + +A+D+VN + +L IL + GEE+ Sbjct: 1 MDLGISSPQVDNAERGFSFRLDGQLDMRMNQDHLETAADIVNSYDEAELIYILKVYGEER 60 Query: 168 QASRIAHAIVKRRQS-APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIE 226 A RIA +IV R + T L+ +I K V + + PATR+FQALRI VN EIE Sbjct: 61 FAKRIARSIVAHRADVGRIEKTIQLAQIINKAVPKREPGK-DPATRTFQALRIKVNQEIE 119 Query: 227 ELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAV 284 E+ + L A L G + V+SFHSLEDR+VK F + + +++ S + Sbjct: 120 EIEKALPIAFDLLNKNGRIAVISFHSLEDRVVKNFAKQQLETDLIPKYIPIKASEIRKSN 179 Query: 285 FQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319 + I K+++P++ ++ N RSRSAKLR R E Sbjct: 180 LKKI-GKLIIPSEIEIKENPRSRSAKLRVIERIEE 213 >gi|87309877|ref|ZP_01092011.1| hypothetical protein DSM3645_03658 [Blastopirellula marina DSM 3645] gi|87287641|gb|EAQ79541.1| hypothetical protein DSM3645_03658 [Blastopirellula marina DSM 3645] Length = 262 Score = 244 bits (623), Expect = 2e-62, Method: Composition-based stats. Identities = 104/281 (37%), Positives = 152/281 (54%), Gaps = 27/281 (9%) Query: 45 FGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD 101 G GG++R + + VIA DRD A+ ++++R + + Q F +L + D Sbjct: 1 MGGGGHTRQLAERVGDEGLVIACDRDLAAIERAEQSLRGLPIKVT--QRNFCELPSVLQD 58 Query: 102 ---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLT 157 +DG++ DLG+SS Q+ +RGFSF GPLD+R G +A+D+VN + KDL Sbjct: 59 LEIDLIDGLLLDLGLSSDQLADRNRGFSFDSDGPLDLRFDETEGDTAADLVNLLSEKDLA 118 Query: 158 RILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQA 216 ++ GEE+ + RIA + RR+ PF DL+ L+ RIHPATR+FQA Sbjct: 119 DVIYQNGEERLSRRIAKKVCLRRKEKPFLLASDLAELVTSCYPGRGARERIHPATRTFQA 178 Query: 217 LRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI 276 LRI VN E+ L L+SA ++ GG + V+SFHSLEDR VK+ F Sbjct: 179 LRIAVNRELSSLESILKSAPDFIRPGGKIAVISFHSLEDRRVKEAFREDE---------- 228 Query: 277 PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 + +TKK ++P++E++ N RSRSAKLR R Sbjct: 229 -------RLEPMTKKPIIPSEEEIMRNPRSRSAKLRVARRV 262 >gi|328773130|gb|EGF83167.1| hypothetical protein BATDEDRAFT_21617 [Batrachochytrium dendrobatidis JAM81] Length = 434 Score = 244 bits (623), Expect = 2e-62, Method: Composition-based stats. Identities = 101/297 (34%), Positives = 148/297 (49%), Gaps = 47/297 (15%) Query: 16 TIGDHVPVLLEKVIALLNP----------------APGKVILDATFGAGGYSRSFC-KMG 58 T DH PVLL V+ +L+P ++I DATFG GGY+++ KM Sbjct: 49 TKPDHKPVLLVPVVDILSPEFDLQSRERQSQRVRFQRPRLICDATFGNGGYTKALLDKMD 108 Query: 59 SNVIALDRDPFAVSCGQET-MR-DYKEQFSLFQATFSQLQDYVP------DKGVDGVVFD 110 V +D+DP A+ + ++ +YK + FS +Q+ + + +DG+VFD Sbjct: 109 CKVFCVDQDPLAIERAMDMSLKPEYKNRLIPIHGKFSDIQNLIAPYTASHEACLDGIVFD 168 Query: 111 LGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQAS 170 +G+SS Q+D RGFSF+K GPLD DL RIL GEEK A Sbjct: 169 IGISSNQLDDASRGFSFRKDGPLD----------------YPEMDLVRILQQYGEEKNAY 212 Query: 171 RIAHAIVKRRQSAPFQTTQDLSSLIQKTVYF---SKNNRIHPATRSFQALRIFVNNEIEE 227 +I I R TT L+ +I K V + HPA ++ +RI++N+E+++ Sbjct: 213 KIVRMIAAIRSKTYINTTTQLAQIIAKAVGKEEHWQQGHKHPAMKT---IRIYINDELKQ 269 Query: 228 LAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV 284 L QGL AE+ LK G +VV+FHSLEDR+VK+FF + + V P + Sbjct: 270 LQQGLVMAERLLKPDGRCVVVTFHSLEDRIVKRFFQACAQGVTPDELPPPMTQQESR 326 Score = 66.7 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 16/46 (34%), Positives = 25/46 (54%) Query: 276 IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERS 321 + ++KK +VP ++++ N RSRSAKLRA RT + Sbjct: 383 VKETGREPSMIPLSKKAIVPDEKEMQENSRSRSAKLRAARRTNHPT 428 >gi|326518102|dbj|BAK07303.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 272 Score = 243 bits (621), Expect = 3e-62, Method: Composition-based stats. Identities = 88/253 (34%), Positives = 125/253 (49%), Gaps = 20/253 (7%) Query: 84 QFSLFQATFSQLQDYVPD--KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-S 140 F + + + + D GVDG++ DLG+SSMQ++ DRGFS GPLDMRM + Sbjct: 19 NFKYIKHVLGGVDESLADGSCGVDGILIDLGMSSMQVNRSDRGFSVLNDGPLDMRMDPRA 78 Query: 141 GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT-- 198 ++A D++N ++ RIL GEE + IVK R++ +T +L LIQ+T Sbjct: 79 TLTAEDILNSWPELEVGRILRDYGEESNWQSLQRRIVKERKTGGLHSTGELVKLIQRTCT 138 Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258 + + I ATR FQALRI VN+E+ L L S L G L V+SFHSLEDR+V Sbjct: 139 ISGGRQGWIKTATRVFQALRIAVNDELRTLEDALHSCFDCLATDGRLAVISFHSLEDRIV 198 Query: 259 KKFFAS---------------RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 K+ F + +TK+ + P+QE+ N Sbjct: 199 KQTFLELIHGGEADGDDDDLAYADIDDEDEPWFKQRVQGTNGTVLTKRPITPSQEEEKLN 258 Query: 304 RRSRSAKLRAGMR 316 +R RSAKLR + Sbjct: 259 QRCRSAKLRVIQK 271 >gi|56808163|ref|ZP_00365945.1| COG0275: Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Streptococcus pyogenes M49 591] Length = 215 Score = 240 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 71/217 (32%), Positives = 112/217 (51%), Gaps = 15/217 (6%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M+ H HV VLL + + +L+ P + +DAT G G+S ++ D Sbjct: 1 MTKEFH-----HVTVLLHETVDMLDIKPDGIYVDATLGGSGHSAYLLSKLGEEGHLYCFD 55 Query: 66 RDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120 +D A+ Q T++ Y K Q + + F L+ + GV DG+++DLGVSS Q+D Sbjct: 56 QDQKAIDNAQVTLKSYIDKGQVTFIKDNFRHLKARLTALGVDEIDGILYDLGVSSPQLDE 115 Query: 121 GDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +RGFS+++ PLDMRM ++A +VVN DL +I GE+K + +IA I + Sbjct: 116 RERGFSYKQDAPLDMRMDRQSLLTAYEVVNTYPFNDLVKIFFKYGEDKFSKQIARKIEQA 175 Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQ 215 R P + T +L+ LI+ + + HPA + FQ Sbjct: 176 RAIKPIEATTELAELIKAAKPAKELKKKGHPAKQIFQ 212 >gi|254468248|ref|ZP_05081654.1| S-adenosyl-methyltransferase MraW [beta proteobacterium KB13] gi|207087058|gb|EDZ64341.1| S-adenosyl-methyltransferase MraW [beta proteobacterium KB13] Length = 212 Score = 237 bits (606), Expect = 2e-60, Method: Composition-based stats. Identities = 89/215 (41%), Positives = 123/215 (57%), Gaps = 11/215 (5%) Query: 109 FDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEK 167 DLGVSS Q+D RGFSF +GPLDMRM S + A +VVN+ N DL +I GEEK Sbjct: 1 MDLGVSSPQLDDASRGFSFMHNGPLDMRMDQSQTLDACEVVNKYNESDLIKIFRDYGEEK 60 Query: 168 QASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEE 227 A RIA I K R +T +L+++++K+V ++ N+R HPAT+ FQALRI VN E+ E Sbjct: 61 FAKRIASNICKIRNEKNITSTLELANIVKKSVPYT-NSRKHPATKVFQALRIEVNQELNE 119 Query: 228 LAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVM-AVRHMIPSNAHPAVFQ 286 L + L LK G L+ ++FHSLEDR+VK F + + IP + Sbjct: 120 LKEALPLLFDVLKPQGRLLALTFHSLEDRIVKNFIKEITKLAPDTIPKFIPIRNTDHHEK 179 Query: 287 SITKKV-----VVPTQEDVAFNRRSRSAKLRAGMR 316 + K ++ + E+V N RSRSA+LR + Sbjct: 180 T---KANVICNLIASTEEVEANPRSRSARLRGVEK 211 >gi|38047597|gb|AAR09701.1| similar to Drosophila melanogaster CG14683 [Drosophila yakuba] Length = 251 Score = 235 bits (601), Expect = 6e-60, Method: Composition-based stats. Identities = 91/244 (37%), Positives = 133/244 (54%), Gaps = 18/244 (7%) Query: 37 GKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMR--DYKEQFSLFQATF 92 G D TFGAGG++R + + V ALDRDP A ++ ++K + F Sbjct: 1 GGTYFDMTFGAGGHTRRLLEKCPEAKVYALDRDPLAHQLARDMSESEEFKGRLIPLLGKF 60 Query: 93 SQLQDYVPDKG-----VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS---CSGISA 144 S L + G VDG++FD G SSMQ D RGFS + GPLDMRM G++A Sbjct: 61 SDLPKLFKEHGLAKNSVDGMLFDFGCSSMQFDEAVRGFSISRDGPLDMRMDGGHSGGVTA 120 Query: 145 SDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA-PFQTTQDLSSLIQKTVYFSK 203 +DV+ DL +IL + GEEK A +IA ++ R + +TT+ L+ +I+ + Sbjct: 121 ADVLANVEEGDLVKILRMYGEEKAAKKIARGLIDARNALFKIETTKQLADIIENIMDGGS 180 Query: 204 NNRI-----HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258 H AT++FQA+RIFVNNE+ E+ G+ A + L+ G L+ ++FHSLED +V Sbjct: 181 RKDKLRRHAHSATKTFQAIRIFVNNELNEINYGMVLANEILRVDGRLVTITFHSLEDTIV 240 Query: 259 KKFF 262 K+ Sbjct: 241 KRHI 244 >gi|223993323|ref|XP_002286345.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220977660|gb|EED95986.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 495 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 107/388 (27%), Positives = 156/388 (40%), Gaps = 112/388 (28%) Query: 38 KVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDY------------- 81 ++ +D T G GG+S++ + +I D DP A+S + DY Sbjct: 112 RLFIDGTLGGGGHSQAILQQLRPCDVLIGCDVDPDALSTASNRLVDYLGTREYILGKSST 171 Query: 82 -------------KEQFSLFQATFSQLQDYVPD--------------------------- 101 + F Q+ F L + + Sbjct: 172 VDAEEMACQWEEGRPMFIPVQSNFRNLINVLSKVRHPVSGRLLLGSRDDSIGDGQKDAVE 231 Query: 102 --KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS------------CSGISASDV 147 G +G++ DLGVSS QID G+RGF+F K GPLDMRMS S ++A+D+ Sbjct: 232 FPNGANGMLLDLGVSSHQIDTGERGFAFMKEGPLDMRMSGNTPQISTSATIGSSLTAADI 291 Query: 148 VNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVY-FSKNNR 206 N+ + + IL G+E +A RIA AI+ R P TT DL I F++ R Sbjct: 292 CNEFDEPTIIDILSTYGDEPRAKRIASAIIASR---PLYTTTDLVHAINSVTPTFARQKR 348 Query: 207 ---IHPATRSFQALRIFVNNEIEELAQGLRS-AEKAL--------------KAGGLLIVV 248 I + R FQALRI VN E L L A L + G+L V+ Sbjct: 349 AGLIATSARVFQALRIVVNEEDGALKDVLERVAPWVLCRSGGLMNVGDDEKRDDGILAVL 408 Query: 249 SFHSLEDRLVKKFFASRS-------------------GKVMAVRHMIPSNAHPAVFQSIT 289 S+HS+ED++ K+ S G V+ ++ F+ + Sbjct: 409 SYHSMEDKMAKRVMRDGSVDFLDGGSKGGSVLERDMFGNVINGDGIVDDAKSHLPFEPV- 467 Query: 290 KKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 K T E++A N R+RSA LR G+R Sbjct: 468 GKPRKATDEEIAVNSRARSATLRVGIRN 495 >gi|125580743|gb|EAZ21674.1| hypothetical protein OsJ_05305 [Oryza sativa Japonica Group] Length = 439 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 92/298 (30%), Positives = 132/298 (44%), Gaps = 43/298 (14%) Query: 62 IALDRDPFAVSCGQETMRDY-----------------------KEQFSLFQATFSQLQDY 98 I +D DP A+ G+ + + + F + + + Sbjct: 141 IGMDVDPSALEIGRSRIEAFLANRETNGDDEDASQGTLRAYTHAKNFKYIKHVLGSVDEN 200 Query: 99 VP--DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKD 155 + GVDG++ DLG+SSMQ++ DRGFS + GPLDMRM + A D++N + Sbjct: 201 IAVGTSGVDGILIDLGMSSMQVNRSDRGFSVLQDGPLDMRMDPKATLKAEDILNSWPDLE 260 Query: 156 LTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV--YFSKNNRIHPATRS 213 + RIL GEE + IVK R +T +L LIQ+T + I ATR Sbjct: 261 VGRILRDYGEESNWQSLQKRIVKARAMGGLHSTGELVKLIQRTCTSSGGRQGWIKTATRV 320 Query: 214 FQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVM--- 270 FQALRI VN+E+ L L + L G L V+SFHSLEDR+VK+ F + Sbjct: 321 FQALRIAVNDELRTLEDALHACFDCLATDGRLAVISFHSLEDRIVKQTFLELIHEDEIDD 380 Query: 271 ------------AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 +TK+ + P+QE+ N+R RSAKLR + Sbjct: 381 DEDDLVSADIDSEDEPWFKQRVQGKNGTILTKRPISPSQEEEELNQRCRSAKLRVIQK 438 >gi|205355535|ref|ZP_03222306.1| hypothetical protein Cj8421_0691 [Campylobacter jejuni subsp. jejuni CG8421] gi|205346769|gb|EDZ33401.1| hypothetical protein Cj8421_0691 [Campylobacter jejuni subsp. jejuni CG8421] Length = 236 Score = 233 bits (594), Expect = 4e-59, Method: Composition-based stats. Identities = 81/230 (35%), Positives = 123/230 (53%), Gaps = 7/230 (3%) Query: 89 QATFSQ-LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASD 146 Q+ FS+ L+ + + G++ D+GVSS Q+D +RGFS LDMRM+ S ISA + Sbjct: 2 QSNFSEVLEKISHKEELRGILADIGVSSFQLDNNERGFSVNSD-FLDMRMNQNSKISAYE 60 Query: 147 VVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNR 206 ++N + LT I GE A IA I R P ++ ++L +I K + + Sbjct: 61 IINTYTKEQLTSIFKDYGELHDAHFIAEKICLERSKNPIKSAKELYQIIGK--GKQNHRK 118 Query: 207 IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRS 266 I AT +FQA+RI VN E++ L L E +L ++SFHSLEDR+VK+FF S Sbjct: 119 ISKATLAFQAIRIEVNQELKVLKDFLEHLENLKPKNCILAIISFHSLEDRIVKQFFKKWS 178 Query: 267 GKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 + + + ++ Q ITKK + ++E++ N RS AK+RA Sbjct: 179 KNCICNEKIMRCECGNNHSLGQIITKKAISASKEELLKNSRSSCAKMRAF 228 >gi|145627903|ref|ZP_01783704.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae 22.1-21] gi|144979678|gb|EDJ89337.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae 22.1-21] Length = 223 Score = 231 bits (590), Expect = 1e-58, Method: Composition-based stats. Identities = 86/226 (38%), Positives = 125/226 (55%), Gaps = 18/226 (7%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M+S + +H+ VLL + + L + +D TFG GG+SR +IA+D Sbjct: 1 MNSENSFSSSEHITVLLHEAVNGLALKENGIYIDGTFGRGGHSRFILSQLSSNGRLIAVD 60 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCG 121 RDP A++ + +F + +FS + + ++G++ DLGVSS Q+D Sbjct: 61 RDPRAIAEAHKI---QDSRFQIEHNSFSHIPEICDKLNLVGKINGILLDLGVSSPQLDEA 117 Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF K GPLDMRM + G+SA + + Q +++DLT +L GEE+ A RIA AIV Sbjct: 118 ERGFSFMKDGPLDMRMDTTQGLSAEEWLKQVSIEDLTWVLKTFGEERFAKRIATAIVDFN 177 Query: 181 QSAP------FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIF 220 +SA T L+ LI + V F K+ HPATRSFQA+RIF Sbjct: 178 KSAVKNGTEFLSRTSQLAELISQAVPF-KDKHKHPATRSFQAIRIF 222 >gi|85057932|ref|YP_456848.1| hypothetical protein AYWB_652 [Aster yellows witches'-broom phytoplasma AYWB] gi|84790037|gb|ABC65769.1| conserved hypothetical protein [Aster yellows witches'-broom phytoplasma AYWB] Length = 202 Score = 231 bits (589), Expect = 2e-58, Method: Composition-based stats. Identities = 82/209 (39%), Positives = 118/209 (56%), Gaps = 8/209 (3%) Query: 111 LGVSSMQIDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQA 169 +G+SS QID RGFS+ + PLDMRM+ + I+A ++N + L I + GE K A Sbjct: 1 MGLSSCQIDNPQRGFSYLHNTPLDMRMNINQTITAQYILNNYSFAQLKNIFKLYGEVKNA 60 Query: 170 SRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELA 229 S + I+K+R P QT+ DL S+ + + H A + FQALRI VN E+E L Sbjct: 61 SLVVSEIIKQR---PLQTSYDLVSITDRFCNL---QKGHSAKKIFQALRIEVNQELESLK 114 Query: 230 QGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT 289 Q L + LK ++V+SFHSLEDR++K FF S V+ + I + IT Sbjct: 115 QALEQSLDLLKPNARIVVISFHSLEDRIIKHFFKKHSTFVLPKKLPI-AIIPQTPLSIIT 173 Query: 290 KKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318 KK +P++E++ N RS SAKLR ++ V Sbjct: 174 KKAFLPSEEEMQNNSRSISAKLRVAVKNV 202 >gi|258539486|ref|YP_003173985.1| S-adenosyl-methyltransferase MraW [Lactobacillus rhamnosus Lc 705] gi|257151162|emb|CAR90134.1| S-adenosyl-methyltransferase MraW [Lactobacillus rhamnosus Lc 705] Length = 214 Score = 230 bits (586), Expect = 4e-58, Method: Composition-based stats. Identities = 70/206 (33%), Positives = 97/206 (47%), Gaps = 7/206 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73 T H VLL++ A L +DAT G GG++R +IA D+D A++ Sbjct: 2 TEFKHETVLLKEATAALAVKSDGTYVDATLGRGGHTRQILNQLTNGRLIAFDQDEAAIAA 61 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 + Q +L F L + D VDGV++DLGVSS Q D RGFS++ Sbjct: 62 VKRHFGTLPPQLTLVHRNFRDLSAALADLDIRQVDGVLYDLGVSSPQFDDSKRGFSYRFD 121 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 PLDMRM + A +VN+ +L RI GEE + +IA I + R AP TT Sbjct: 122 APLDMRMDQRQTLDAKTIVNEWPYAELVRIFSRYGEEHFSKQIARRIEQARAQAPITTTF 181 Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSF 214 L LI+ + + HPA +S Sbjct: 182 QLVELIKAGIPAKARRTGGHPAKKSL 207 >gi|118354992|ref|XP_001010757.1| MraW methylase family protein [Tetrahymena thermophila] gi|89292524|gb|EAR90512.1| MraW methylase family protein [Tetrahymena thermophila SB210] Length = 422 Score = 223 bits (568), Expect = 4e-56, Method: Composition-based stats. Identities = 83/321 (25%), Positives = 151/321 (47%), Gaps = 35/321 (10%) Query: 20 HVPVLLEKVIALLN--------PAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPF 69 H PVL++K+ +L K ++D T G+ G+++ F + + LD DP Sbjct: 100 HYPVLIDKITQVLQEEFYPHSSSHSEKCLVDCTLGSAGHAKHFLQKFPYLYILGLDLDPR 159 Query: 70 AVSCGQETMRDY-----KEQFSLFQATFSQLQ----------DYVPDKGVDGVVFDLGVS 114 + + ++ + +F F+ + ++ K + DLG + Sbjct: 160 MLQYINDNVKSQLSHSDQNRFKTRNENFTNIDKINLYKIFEEEFPSYKNFHAIFADLGYN 219 Query: 115 SMQIDCGDRGFSFQKSGPLDMRMSCSGIS--ASDVVNQANVKDLTRILGILGEEKQASRI 172 ++ ++ + GFS+ ++G LDMR + S + A+D++N+A+ +L I+ GE+ A I Sbjct: 220 TLHLENSEWGFSYLRNGKLDMRYNQSSQTNSAADILNKASYLELFEIIRQYGEDPNADVI 279 Query: 173 AHAIVKRRQSAPFQTTQDLSSLI--QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQ 230 + I+K+RQ PF+TT+D+ LI ++ Y K + T+ FQALRI N E+ L Sbjct: 280 SQMIIKQRQIKPFETTKDVVDLILEDQSGYSFKGGQYKAITKLFQALRIATNQELTNLQV 339 Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK 290 + L GL I+++FHSLE+ +V++ + + I + + Sbjct: 340 FMDKIYDKLLKDGLGIIITFHSLEENIVEQKLRD-----LVINRQIEVRKRQKNIEILQM 394 Query: 291 KVVVPTQEDVAFNRRSRSAKL 311 P ++ N +SRSAKL Sbjct: 395 G-EKPDINELQKNSKSRSAKL 414 >gi|145349365|ref|XP_001419106.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144579337|gb|ABO97399.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 254 Score = 222 bits (566), Expect = 6e-56, Method: Composition-based stats. Identities = 82/256 (32%), Positives = 129/256 (50%), Gaps = 13/256 (5%) Query: 20 HVPVLLEKVIALL-NPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H P +L + IA L P V +D TFG GG++R + A D DP A+ G+ Sbjct: 1 HTPAMLAETIAALVAPDRSGVYVDGTFGRGGHTRGILAALSAEGRLHAFDMDPEAIKVGK 60 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGV--DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133 E + +F + A F + D + GV GV DLG+SS Q D RGF ++ GPL Sbjct: 61 E-LEREDSRFKIHHAPFGCMADVLRPLGVKPSGVFLDLGISSPQFDDSSRGFRPEQDGPL 119 Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQA---SRIAHAIVKRRQSAPF-QTT 188 D+R G+ AS+ + + ++L R++ GE RI AIV R++ TT Sbjct: 120 DLRFDVERGVPASEYLRLVSREELRRVIHEYGETTDPIAARRITDAIVLARENGSLPSTT 179 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 ++ ++L+ K + +HPA +FQALRI +N E +E+ +G+ +A + G L ++ Sbjct: 180 KEFAALVAKA-KGKEYQMMHPAKLTFQALRIALNQEFDEMRRGMHAAFDIMPEHGRLGIL 238 Query: 249 SFHSLEDRLVKKFFAS 264 ++ E +V FF Sbjct: 239 TWKHSECAIVVDFFRD 254 >gi|256080680|ref|XP_002576606.1| S-adenosyl-methyltransferase mraW [Schistosoma mansoni] gi|238661881|emb|CAZ32843.1| S-adenosyl-methyltransferase mraW, putative [Schistosoma mansoni] Length = 260 Score = 221 bits (565), Expect = 9e-56, Method: Composition-based stats. Identities = 98/257 (38%), Positives = 130/257 (50%), Gaps = 47/257 (18%) Query: 90 ATFSQLQDYV-----PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISA 144 FS L + + VD ++ DLGVSS+Q+D RGF F+ + PLDMRM+ S Sbjct: 20 GRFSDLPQLLNGYNLKYQSVDLILMDLGVSSLQLDIESRGFGFKHNAPLDMRMNQSPN-- 77 Query: 145 SDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQTTQDLSSLIQKTVYFSK 203 + I GEE+ + RIA+AIV R QTT+ L+ LI V ++ Sbjct: 78 ---------------VHIYGEERLSKRIANAIVDYRNDVGSIQTTKQLADLIHSVVPMNR 122 Query: 204 NNR--IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKF 261 R IHPATR FQALRIF+N+E+ EL GL AE LK GG L+V+SFHSLEDRLVK Sbjct: 123 EGRSSIHPATRVFQALRIFINDELNELCIGLELAEFLLKPGGYLVVLSFHSLEDRLVKWS 182 Query: 262 F---------------ASRSGKVMAVRHMIPSNA--HPAVFQSITK-----KVVVPTQED 299 F SR + + R + ++ Q +K + P+ + Sbjct: 183 FHSDYKHLTLSKYLSQRSRHFQCINKRQEYEDDEISKESLGQIKSKWNCVIGPITPSDSE 242 Query: 300 VAFNRRSRSAKLRAGMR 316 + N RSRSAKLR R Sbjct: 243 IDSNPRSRSAKLRIAKR 259 >gi|330950233|gb|EGH50493.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae Cit 7] Length = 187 Score = 220 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 80/184 (43%), Positives = 119/184 (64%), Gaps = 6/184 (3%) Query: 89 QATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GIS 143 Q +F++L ++G V G++ DLGVSS Q+D +RGFSF GPLDMRM + G+S Sbjct: 2 QRSFAELGSETQERGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDGPLDMRMDPTRGVS 61 Query: 144 ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSK 203 A++ + A +++ R+ GEE+ A R+A+A+V RR+ PF T DL+ +++ + Sbjct: 62 AAEFIATAPAEEIARVFKEYGEERFAKRMANAVVARREVQPFDRTADLAEVLKVANPAWE 121 Query: 204 NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFA 263 + +PATR+FQ LRI VNNE+ +L GL +A AL+ GG L+V+SFHSLEDR+VK F Sbjct: 122 KGK-NPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLVVISFHSLEDRIVKLFMR 180 Query: 264 SRSG 267 + Sbjct: 181 KLAK 184 >gi|330981226|gb|EGH79329.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 186 Score = 216 bits (552), Expect = 3e-54, Method: Composition-based stats. Identities = 68/181 (37%), Positives = 105/181 (58%), Gaps = 9/181 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 H+ VLLE+ + L LD TFG GG+SR ++ D+DP A++ GQ Sbjct: 7 HITVLLEEAVEALAVRADGCYLDGTFGRGGHSRLILSQLGPDGRLLGFDKDPQAIATGQA 66 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + +F + Q +F++L ++G V G++ DLGVSS Q+D +RGFSF GP Sbjct: 67 -LAAEDGRFVIVQRSFAELGSETQERGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDGP 125 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 LDMRM + G+SA++ + A +++ R+ GEE+ A R+A+A+V RR+ PF+ T DL Sbjct: 126 LDMRMDPTRGVSAAEFIATAPAEEIARVFKEYGEERFAKRMANAVVARREVQPFERTADL 185 Query: 192 S 192 + Sbjct: 186 A 186 >gi|165377202|ref|NP_689849.2| probable methyltransferase-like protein 15 isoform 2 [Homo sapiens] gi|119588674|gb|EAW68268.1| methyltransferase 5 domain containing 1, isoform CRA_c [Homo sapiens] Length = 273 Score = 216 bits (550), Expect = 5e-54, Method: Composition-based stats. Identities = 76/189 (40%), Positives = 112/189 (59%), Gaps = 11/189 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H+PV++++V+ L+P G++ LD TFG+GG++++ + S+ + ALDRDP A + + Sbjct: 72 HIPVMVDEVVHCLSPQKGQIFLDMTFGSGGHTKAILQKESDIVLYALDRDPTAYALAEHL 131 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 Y +Q FSQ + + GV DGV+ DLG SSMQ+D +RGFS +K GP Sbjct: 132 SELYPKQIRAMLGQFSQAEALLMKAGVQPGTFDGVLMDLGCSSMQLDTPERGFSLRKDGP 191 Query: 133 LDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM +A+DVVN + + L IL GEEK A +IA AIV+ R P T Sbjct: 192 LDMRMDGGRYPDMPTAADVVNALDQQALASILRTYGEEKHAKKIASAIVQARSIYPITRT 251 Query: 189 QDLSSLIQK 197 Q L+S++ + Sbjct: 252 QQLASIVAE 260 >gi|205373087|ref|ZP_03225892.1| S-adenosyl-methyltransferase MraW [Bacillus coahuilensis m4-4] Length = 184 Score = 216 bits (550), Expect = 5e-54, Method: Composition-based stats. Identities = 57/169 (33%), Positives = 91/169 (53%), Gaps = 7/169 (4%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAV 71 + +H VLL + + L P + +D T G G+S G ++ A D+D A+ Sbjct: 11 ENMFNHTTVLLRETVDELKIKPNGIYVDCTLGGAGHSEYLLSQLGEGGHLFAFDQDETAL 70 Query: 72 SCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 E + Y ++ + ++ F L+ + + GVDG+++DLGVSS Q+D +RGFS+ Sbjct: 71 RHAAEKLNAYSDKVTYVKSNFRYLKSELTNLGVMGVDGILYDLGVSSPQLDTPERGFSYH 130 Query: 129 KSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 PLDMRM G +SA +VVN+ + + L RI GEEK + +IA + Sbjct: 131 HDAPLDMRMDLQGAVSAYEVVNEWSYEKLVRIFFQYGEEKFSKQIARKM 179 >gi|13537286|dbj|BAB40632.1| hypothetical protein [Listonella pelagia] Length = 189 Score = 215 bits (548), Expect = 8e-54, Method: Composition-based stats. Identities = 72/197 (36%), Positives = 102/197 (51%), Gaps = 19/197 (9%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 M+ A H+ VLL + I L P +D TFG GG+SR+ + ++D Sbjct: 1 MTEAF-----KHISVLLNESIDGLAIKPDGTYIDGTFGRGGHSRTILSKLGENGRLFSID 55 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCG 121 RDP A++ Q+ +F++ FS + +Y VDGV+ DLGVSS Q+D Sbjct: 56 RDPQAIAEAQKI---DDPRFTIIHGPFSGMAEYAERYDLVGKVDGVLLDLGVSSPQLDDA 112 Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +RGFSF K GPLDMRM SG+ S + A + D+T ++ GE+K A RIA IV R Sbjct: 113 ERGFSFMKDGPLDMRMDPTSGMPVSQWLMDAELDDITWVIREFGEDKHARRIAKGIVAYR 172 Query: 181 ---QSAPFQTTQDLSSL 194 ++ P T L+ L Sbjct: 173 ENEENEPLTRTGQLAKL 189 >gi|221061767|ref|XP_002262453.1| SAM dependent methyltransferase [Plasmodium knowlesi strain H] gi|193811603|emb|CAQ42331.1| SAM dependent methyltransferase, putative [Plasmodium knowlesi strain H] Length = 507 Score = 215 bits (548), Expect = 8e-54, Method: Composition-based stats. Identities = 82/345 (23%), Positives = 154/345 (44%), Gaps = 72/345 (20%) Query: 29 IALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMRDYKE-- 83 ++L+ + +DAT G GG++ K S V+A+D+D ++ ++ ++ Y + Sbjct: 179 VSLMQNTSPEYYIDATLGGGGHTLEILKSFPRTSRVVAIDKDIESIYYSKQKLQCYVDTN 238 Query: 84 QFSLFQATFSQLQDYVPDKGV------DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 + ++ + + + G+ G++ DLGVS+ Q+ CG RGFS+Q +G LDM + Sbjct: 239 KLTMIHGDYRYIIHLLHRHGLPLFGRYSGILLDLGVSTHQLKCGRRGFSYQHNGLLDMSI 298 Query: 138 S-----------------------------------------CSGIS---ASDVVNQANV 153 +++N + Sbjct: 299 DRYTDEEYDRMCRESIEREEGGSNEDYQYDQTNQIKRAKGESPQSEPKKGIGEILNTYSA 358 Query: 154 KDLTRILGILGEEKQASRIAHAIVKRRQS-APFQTTQDLSSLIQKTVYFSKNNRIHPATR 212 + L I+ G+EK+A +IA IV+ R+S +TT L ++ T + +R Sbjct: 359 QQLRFIMHTYGQEKKAYKIAKKIVQWRKSSGTIRTTYQLRDIVLSTCKKNYKANQKVLSR 418 Query: 213 SFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAV 272 FQ+ RI++N+E++ L + L S+ K L+A L+V+S+HSLE + V+ F SR Sbjct: 419 VFQSFRIYINDEMKALKEFLLSSYKLLRAKKRLVVISYHSLEYKCVEMFVHSR------- 471 Query: 273 RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 +++ I + P +E++ N+ +RSAK+ + Sbjct: 472 ---------KNLWKKINDVDITPNEEELKANKSARSAKMSVFEKI 507 >gi|21749636|dbj|BAC03631.1| unnamed protein product [Homo sapiens] Length = 273 Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats. Identities = 75/189 (39%), Positives = 112/189 (59%), Gaps = 11/189 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H+PV++++V+ L+P G++ LD TFG+GG++++ + S+ + ALDRDP A + + Sbjct: 72 HIPVMVDEVVHCLSPQKGQIFLDMTFGSGGHTKAILQKESDIVLYALDRDPTAYALAEHL 131 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 Y +Q FSQ + + GV DGV+ DLG SSMQ+D +RGFS +K GP Sbjct: 132 SELYPKQIRAMLGQFSQAEALLMKAGVQPGTFDGVLMDLGCSSMQLDTPERGFSLRKDGP 191 Query: 133 LDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LD+RM +A+DVVN + + L IL GEEK A +IA AIV+ R P T Sbjct: 192 LDVRMDGGRYPDMPTAADVVNALDQQALASILRTYGEEKHAKKIASAIVQARSIYPITRT 251 Query: 189 QDLSSLIQK 197 Q L+S++ + Sbjct: 252 QQLASIVAE 260 >gi|167932993|ref|ZP_02520080.1| S-adenosyl-methyltransferase MraW [candidate division TM7 single-cell isolate TM7b] Length = 242 Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats. Identities = 102/258 (39%), Positives = 138/258 (53%), Gaps = 26/258 (10%) Query: 61 VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG--VDGVVFDLGVSSMQI 118 + +DRD A++ +L A F + G D ++ DLGVSS Q+ Sbjct: 2 LFLVDRDENAIAE-LGRFSALGA--TLINADFVSAAKQLVSVGEKFDVIMVDLGVSSPQL 58 Query: 119 DCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEK--QASRIAHA 175 D GDRGFSF GPLDMRM SA+D+VN + L IL GEE+ A RIA Sbjct: 59 DNGDRGFSFMYDGPLDMRMDQRQKFSAADIVNSYPKQKLIEILVRYGEERLSFAKRIADE 118 Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235 I KRR PF T +L+ +I + ++ +IHPATR+FQALRI VN E+ ++ L Sbjct: 119 IYKRR---PFTKTSELAKMIVE-IHRGGWQKIHPATRTFQALRIEVNQELAQIESLLPLL 174 Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV-V 294 + L +GG + ++SFHSLEDRLVK+FF SG + + + KK + Sbjct: 175 LQLLNSGGRVGIISFHSLEDRLVKRFFKDNSGLSF-----------ESELELLNKKPLDG 223 Query: 295 PTQEDVAFNRRSRSAKLR 312 T + A+N RSRSAKLR Sbjct: 224 ATYD--AYNPRSRSAKLR 239 >gi|68163389|ref|NP_001020152.1| hypothetical protein LOC295985 [Rattus norvegicus] gi|60551447|gb|AAH91215.1| Similar to RIKEN cDNA 0610027B03 [Rattus norvegicus] Length = 286 Score = 211 bits (538), Expect = 1e-52, Method: Composition-based stats. Identities = 79/194 (40%), Positives = 113/194 (58%), Gaps = 11/194 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H+PV++++V+ L P G+V LD TFG+GG+S++ + + V ALDRDP A + + Sbjct: 72 HIPVMVDEVVQCLTPQKGQVFLDMTFGSGGHSKAILQKEPDVTVYALDRDPVAFTLAERL 131 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKG-----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 Y Q FSQ + + G VDGV+ DLG SSMQ+D +RGFS +K GP Sbjct: 132 SEMYPTQIHAMLGQFSQAETLLMKAGVQPGTVDGVLLDLGCSSMQLDAPERGFSLRKDGP 191 Query: 133 LDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 LDMRM +A+DVVN + + L IL GEEK A +IA AI++ R + P T Sbjct: 192 LDMRMDGDRYPDMPTAADVVNALDQQALASILRAYGEEKHAKKIASAIIQARSTYPISRT 251 Query: 189 QDLSSLIQKTVYFS 202 Q L+S++ T++ S Sbjct: 252 QQLASIVAGTLFKS 265 >gi|156095737|ref|XP_001613903.1| S-adenosyl-methyltransferase mraW [Plasmodium vivax SaI-1] gi|148802777|gb|EDL44176.1| S-adenosyl-methyltransferase mraW, putative [Plasmodium vivax] Length = 471 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 83/332 (25%), Positives = 149/332 (44%), Gaps = 66/332 (19%) Query: 36 PGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDY--KEQFSLFQA 90 P + +DAT G GG++ K S VIA+D+D ++ Q+ ++ Y + ++ Sbjct: 156 PVEYFIDATLGGGGHTLEMLKKLAPTSKVIAIDKDIESIYYNQQKLQRYVDANKLTMIHG 215 Query: 91 TFSQLQDYVPDKGV------DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSG--- 141 + + + G+ G++ DLG S+ Q+ CG RGFS++ +G LDM M Sbjct: 216 DYRYIIHLLHRYGLPLFGSYSGILLDLGASTHQLRCGRRGFSYKHNGLLDMSMDRYTDEE 275 Query: 142 -----------------------------------ISASDVVNQANVKDLTRILGILGEE 166 +++N + + L I+ G+E Sbjct: 276 YARMCREGAERGGSGSNGGFQVKQANRANPQTEPPKRIGEILNTYSPQQLRHIMHTYGQE 335 Query: 167 KQASRIAHAIVKRRQSA-PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEI 225 K+AS+IA I + R+S TT L ++ T + +R FQ+ RI+VN+E+ Sbjct: 336 KKASKIAKKIAQWRKSRGTITTTHQLRDIVLSTCKQNYKANQKVLSRVFQSFRIYVNDEM 395 Query: 226 EELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF 285 + L + L S+ K L+A L+V+S+HSLE + V++F SR ++ Sbjct: 396 KALKEFLLSSYKLLRARKRLVVISYHSLEYQCVERFVHSR----------------KNLW 439 Query: 286 QSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 + I + P++ ++ N+ +RSAK+ + Sbjct: 440 EKINDVDITPSEGELKANKSARSAKMSVFEKV 471 >gi|124806575|ref|XP_001350761.1| s-adenosyl-methyltransferase, putative [Plasmodium falciparum 3D7] gi|23496889|gb|AAN36441.1| s-adenosyl-methyltransferase, putative [Plasmodium falciparum 3D7] Length = 508 Score = 209 bits (533), Expect = 4e-52, Method: Composition-based stats. Identities = 83/313 (26%), Positives = 140/313 (44%), Gaps = 58/313 (18%) Query: 40 ILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQL 95 +DAT G GG++ +I +D+D A+ + ++ + + L + + Sbjct: 207 YIDATLGGGGHTLEILNKIPNCRIIGIDKDIEALYYNKIKLKRFINNNKLKLIHGDYGNI 266 Query: 96 QDYVPDKG------VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGIS------ 143 + G++ DLGVSS Q+ C DRGFS++ +G LDM M+ S Sbjct: 267 LHLLHLHSLPIFNYYSGILIDLGVSSHQLKCCDRGFSYKYNGILDMNMNKYTESQYLSKL 326 Query: 144 ------------------------ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 +++N ++K L I+ GEEK+A +IA I++ Sbjct: 327 FRNDNEHINDINDIKKNPKNSYNKLHNILNTYSLKKLKFIIDTYGEEKKALKIAKKIIQW 386 Query: 180 R-QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 R ++ TT L ++I T + + +R FQA RI++N E++ L Q L S+ K Sbjct: 387 RKENGMILTTFQLKNIILSTCKQNYKSNNKVLSRVFQAFRIYINQELKTLKQLLISSHKL 446 Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298 LK G LIV+++HSLE + V+ F K + V+P+ E Sbjct: 447 LKTGKKLIVITYHSLEKKCVELFIEKNKQKWTKLHQN-----------------VMPSDE 489 Query: 299 DVAFNRRSRSAKL 311 ++ N+ +RSAK+ Sbjct: 490 EIKLNKSARSAKM 502 >gi|218461400|ref|ZP_03501491.1| S-adenosyl-methyltransferase MraW [Rhizobium etli Kim 5] Length = 216 Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats. Identities = 92/216 (42%), Positives = 122/216 (56%), Gaps = 2/216 (0%) Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEK-QASRIAHAIVKRRQSAPFQ 186 QK+GPLDMR S + S + L + K + PF+ Sbjct: 1 QKNGPLDMRKSAARHFGSRRCQTRQGRRSHPHLSVFWARKAKRRVSRMRSRSAVPKKPFE 60 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 TT+DL+ LI+ ++IHPATR FQALRIFVN+E+ ELAQ L +AE+ALK GG L+ Sbjct: 61 TTRDLAGLIELVTPRKMKDKIHPATRVFQALRIFVNDELGELAQALFAAERALKPGGRLV 120 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 VV+FHSLEDR+VKKFF+ R+GK RH+ ++ A F I K +V ++ + N R+ Sbjct: 121 VVTFHSLEDRIVKKFFSDRAGKATGSRHLPAAHERAATFTVIGKPMVSASEAEAEVNPRA 180 Query: 307 RSAKLRAGMRT-VERSIEDDSFVHLPRLPTLSQFRG 341 RSAKLRAG+RT D S P L TL + G Sbjct: 181 RSAKLRAGLRTDAATEPADMSLFGFPNLATLGKLGG 216 >gi|167752871|ref|ZP_02424998.1| hypothetical protein ALIPUT_01133 [Alistipes putredinis DSM 17216] gi|167659940|gb|EDS04070.1| hypothetical protein ALIPUT_01133 [Alistipes putredinis DSM 17216] Length = 183 Score = 204 bits (520), Expect = 2e-50, Method: Composition-based stats. Identities = 76/185 (41%), Positives = 104/185 (56%), Gaps = 5/185 (2%) Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM+ G +A+D+VN + LTRILG GE ++A IV+ R + P TT DL + Sbjct: 1 MRMNQRGGGTAADLVNTLDADALTRILGDWGEIDTPWKVAACIVRARTAQPILTTADLVA 60 Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 + K + T+ FQALRI VN E+E L L + K L+ GG L+V+S+HSL Sbjct: 61 AVAPCTP--KKDESKFLTKLFQALRIEVNGEMEALKMALEQSLKVLRPGGRLVVISYHSL 118 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 EDRLVK F S + + + P F+ IT+K V P+ E++ N RSRSAKLRA Sbjct: 119 EDRLVKNFLRSGNFEGRIEKDFFGKPETP--FEIITRKAVTPSSEELVRNPRSRSAKLRA 176 Query: 314 GMRTV 318 + V Sbjct: 177 AAKIV 181 >gi|213025088|ref|ZP_03339535.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 165 Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats. Identities = 65/163 (39%), Positives = 93/163 (57%), Gaps = 11/163 (6%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ Q Sbjct: 6 KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAQ 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +FS+ FS L DYV ++ +DG++ DLGVSS Q+D +RGFSF + G Sbjct: 66 TI---NDPRFSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFMRDG 122 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIA 173 PLDMRM + G SA++ + A D+ +L GEE+ A RIA Sbjct: 123 PLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIA 165 >gi|72384693|gb|AAZ67638.1| S-adenosyl-methyltransferase putative [Haemophilus parasuis 29755] Length = 187 Score = 202 bits (514), Expect = 7e-50, Method: Composition-based stats. Identities = 61/181 (33%), Positives = 94/181 (51%), Gaps = 2/181 (1%) Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 M + +VVNQ + + L RI GEEK + +IA I R+ P +TT +L +I+ Sbjct: 1 MDQTQSFWYEVVNQWSYEALVRIFFRYGEEKFSKQIARRIEAHREQQPIETTLELVDVIK 60 Query: 197 KTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255 + + + HPA R FQA+RI VN+E+ + A + +K GG + V++FHSLED Sbjct: 61 EGIPAKARRKGGHPAKRVFQAIRIAVNDELSAFEDSVEQAIECVKVGGRISVITFHSLED 120 Query: 256 RLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 RL K+ F R + A+ + + +K + T +D+ N R+RSAKLR Sbjct: 121 RLCKQIFQEFEKGPDVPRGLPVIPEAYTPKLKRVNRKPITATDDDLNENNRARSAKLRVA 180 Query: 315 M 315 Sbjct: 181 E 181 >gi|210610079|ref|ZP_03288258.1| hypothetical protein CLONEX_00444 [Clostridium nexile DSM 1787] gi|210152690|gb|EEA83696.1| hypothetical protein CLONEX_00444 [Clostridium nexile DSM 1787] Length = 211 Score = 201 bits (513), Expect = 1e-49, Method: Composition-based stats. Identities = 73/220 (33%), Positives = 113/220 (51%), Gaps = 21/220 (9%) Query: 104 VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGI 162 D ++ DLGVSSMQID DRGF+++ G LD+R++ G SA++ + +L +L Sbjct: 5 FDFILADLGVSSMQIDNPDRGFTYKSEGSLDLRLNPEKGESAAERLKNVTEDELEGMLVE 64 Query: 163 LGEEKQASRIAHAIVKR-RQSAPFQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQA 216 +E A+ IA ++K+ RQ TT L I++ + F K R+FQA Sbjct: 65 NSDEPYAAEIAQQVMKKLRQGEMIDTTTKLYETIEEALSFIPEKERKEAVKKSCQRTFQA 124 Query: 217 LRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI 276 LRI VN+E E L + ALK+GG + +++FHS EDR+VKK F Sbjct: 125 LRIDVNSEFEVLYALMEKLPSALKSGGKVAILTFHSGEDRIVKKAFKEWKKAG------- 177 Query: 277 PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 V+ I V+ P+ ++ N R++S K+R ++ Sbjct: 178 -------VYSEIANDVIRPSAKECVRNSRAKSTKMRWAIK 210 >gi|325915801|ref|ZP_08178101.1| putative S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Xanthomonas vesicatoria ATCC 35937] gi|325537984|gb|EGD09680.1| putative S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Xanthomonas vesicatoria ATCC 35937] Length = 218 Score = 200 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 69/187 (36%), Positives = 101/187 (54%), Gaps = 6/187 (3%) Query: 152 NVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPAT 211 +D+ +L GEE+Q+ RIA AIV RR P T L+ LI + +++ HPAT Sbjct: 19 PPRDIADVLWTYGEERQSRRIARAIVARRAEQPLLRTAQLADLIASVMPRG-DSKTHPAT 77 Query: 212 RSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMA 271 RSFQA+RI++N E+++L GL +A ALK GG L V+SFHSLEDR+VK+F A + + Sbjct: 78 RSFQAIRIYINRELDDLQAGLDAALDALKPGGRLAVISFHSLEDRIVKQFMARYAKAPPS 137 Query: 272 VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR----TVERSIEDDSF 327 R + + Q I+ + ++ N R+RSA LR + E + + Sbjct: 138 NRRLPEAQPFVPTLQLIS-GAIKADDAELNINPRARSAVLRVAEKLGMGNGESGMGKGNS 196 Query: 328 VHLPRLP 334 PR P Sbjct: 197 AAAPRFP 203 >gi|42559483|sp|Q8KTR3|RSMH_TREPR RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH gi|21702588|gb|AAM75985.1|AF481102_21 putative protein YabC [Candidatus Tremblaya princeps] Length = 295 Score = 200 bits (509), Expect = 3e-49, Method: Composition-based stats. Identities = 81/313 (25%), Positives = 131/313 (41%), Gaps = 35/313 (11%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75 +H V++++V+ L + +DAT+G GG+S + VIALD D ++ Sbjct: 5 EHRSVMIQEVVDNLLTNTSGLYIDATYGTGGHSTALLGCLGPQGKVIALDCD-QSIRFDH 63 Query: 76 ETMRDYKEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 + + A F +L Y+ G DG+V DLG S+ Q+ RG S+ GP Sbjct: 64 T----SDPRAAAGHANFRELSGYLRCAEIYGADGIVADLGPSATQVHDAQRGLSYLHPGP 119 Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 +DMR+ + + S + + + L L G + A I+ + A + TT D Sbjct: 120 IDMRVDPTLRVPLSGRLMRTGLGTLHSSLRCHGFSGRTKAAASRILHIVRKARYTTTLD- 178 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 + N H A +F+ALR N+E + L +R A LK GG L++++F Sbjct: 179 ---VATAACGLHNQGKHMAADAFRALRSMANSEPQCLRSLVRHAPAVLKPGGRLLILTFD 235 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 S +R+V+ S + + V PTQ +V N +RS+ L Sbjct: 236 SFGERMVRASIEHASC-------------------LVLMRTVAPTQREVDTNPGARSSLL 276 Query: 312 RAGMRTVERSIED 324 RT Sbjct: 277 HVLRRTGNPRSAA 289 >gi|70953007|ref|XP_745633.1| hypothetical protein [Plasmodium chabaudi chabaudi] gi|56526017|emb|CAH81938.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi] Length = 318 Score = 200 bits (508), Expect = 3e-49, Method: Composition-based stats. Identities = 89/340 (26%), Positives = 155/340 (45%), Gaps = 66/340 (19%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76 DH P+LL + ++DAT G GG++ K + + I++D+D A+ + Sbjct: 4 DH-PILLH--------NQNEYMIDATLGGGGHTLEILKKFTKLKVISIDKDIEAIYYNKY 54 Query: 77 TMRDYKE--QFSLFQATFSQLQDYVPDKGV------DGVVFDLGVSSMQIDCGDRGFSFQ 128 ++ Y + + L + + + + ++ DLGVS+ Q+ RGFS++ Sbjct: 55 KLKSYIDTNRLKLIHGNYKDILFLLNYHSLPLFNSYSAILVDLGVSTHQLKSSKRGFSYK 114 Query: 129 KSGPLDMRMSC-------------------------------SGISASDVVNQANVKDLT 157 + LDM M+ G +++N N+K L Sbjct: 115 YNNILDMNMNKYTEKEYVENYINKELKQDNEIKELYMTSEIEDGKKIHNILNTYNLKKLK 174 Query: 158 RILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQAL 217 I+ GEEK+A +IA I++ R+ T L ++I T + + +R FQA Sbjct: 175 YIIQKFGEEKKAFKIAKKIIEWRKQNKEIVTTLLKNIILSTCKNNYKSNNKVLSRVFQAF 234 Query: 218 RIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP 277 RI+VNNE+ L L S+ K LK GG+LIV+S+HSLE++ + F +++ Sbjct: 235 RIYVNNELLSLKNLLLSSHKILKQGGVLIVISYHSLENKYIDLFVKNKTQ---------- 284 Query: 278 SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 +++ I +VPT +++ N+ SRSAK+ A + Sbjct: 285 ------LWKQINTHPIVPTDQEIKLNKSSRSAKMFAFKKV 318 >gi|323445745|gb|EGB02206.1| hypothetical protein AURANDRAFT_69098 [Aureococcus anophagefferens] Length = 335 Score = 197 bits (502), Expect = 2e-48, Method: Composition-based stats. Identities = 80/246 (32%), Positives = 121/246 (49%), Gaps = 19/246 (7%) Query: 3 SKSCKTMSSAIHHTIGDHVPVLLEKVIALLNP--APGKVILDATFGAGGYSRSFCKMGS- 59 + +C TM ++ G H P + E+ + L P V +D TFG GG++R + Sbjct: 98 ATTCGTMQAS-----GTHTPAMFEECVEALGVEWNPDGVYVDGTFGRGGHTRKILEKLGP 152 Query: 60 --NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQ 117 + D DP AV+ G E +R +F + A FS + + VDGV+ D+G+SS Q Sbjct: 153 KGTLHGFDMDPEAVAVG-EQLRGEDPRFVIHHAPFSSMAAVLAGVAVDGVLLDIGISSPQ 211 Query: 118 IDCGDRGFSFQKSGPLDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEK--QASRIA 173 +D G RGF + GPLDMR A + +A+ +L L G E+ A RIA Sbjct: 212 LD-GGRGFKPEVDGPLDMRFDVREGVEDAMGYLRRASRVELAAALEAYGGERPAAARRIA 270 Query: 174 HAIVKRRQSAPFQ--TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQG 231 A+ ++ TT+ + L+++ + +HPA +FQALRI VN E EL +G Sbjct: 271 DAVALAKKDGSLARMTTRPFADLVERA-KGKEYQAMHPAKMTFQALRIVVNREYLELERG 329 Query: 232 LRSAEK 237 L A + Sbjct: 330 LAGALE 335 >gi|225166427|ref|ZP_03728086.1| S-adenosyl-methyltransferase MraW [Opitutaceae bacterium TAV2] gi|224799334|gb|EEG17902.1| S-adenosyl-methyltransferase MraW [Opitutaceae bacterium TAV2] Length = 192 Score = 196 bits (498), Expect = 5e-48, Method: Composition-based stats. Identities = 69/190 (36%), Positives = 105/190 (55%), Gaps = 3/190 (1%) Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 P DMRM +G+ AS + A L R + GEE+ A+R+ AI R + T Sbjct: 2 DAPADMRMDPRTGVPASLWLETATDDMLLRAIRDYGEERHATRVVRAIKDARGTGTLSRT 61 Query: 189 QDLSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 L+ LI + +IHPATR+FQ +RI +N+E+ L + L +A L++GG+L Sbjct: 62 ASLAELIANAIPARDRFSAKIHPATRAFQGIRIAINDELGALERALPAAFALLRSGGVLA 121 Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306 +SFHSLEDR VK+ F G+ + P++ + +T+K V P+ +++A N R+ Sbjct: 122 AISFHSLEDRPVKQAFRRFCGQPESHDDHRPADLREKFAEPLTRKPVTPSDDELAANPRA 181 Query: 307 RSAKLRAGMR 316 RSAKLRA + Sbjct: 182 RSAKLRAIRK 191 >gi|312867867|ref|ZP_07728072.1| S-adenosyl-methyltransferase MraW [Streptococcus parasanguinis F0405] gi|311096622|gb|EFQ54861.1| S-adenosyl-methyltransferase MraW [Streptococcus parasanguinis F0405] Length = 186 Score = 196 bits (498), Expect = 6e-48, Method: Composition-based stats. Identities = 57/173 (32%), Positives = 90/173 (52%), Gaps = 14/173 (8%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65 MS H HV VLL + I +L+ P + +DAT G G+S ++ A D Sbjct: 1 MSKEFH-----HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLTKLNESGHLYAFD 55 Query: 66 RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120 +D A+ + + + E+ + + F L++ + D GV DG+ +DLGVSS Q+D Sbjct: 56 QDQHAIENAKIRLAPFIEKGMVTFIKDNFRHLKERLNDLGVTEIDGICYDLGVSSPQLDE 115 Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRI 172 +RGFS++K PLDMRM+ ++A +VVN + DL RI + S++ Sbjct: 116 RERGFSYKKDAPLDMRMNQEASLTAYEVVNSYDYHDLVRIFSNMERINFPSKL 168 >gi|145502845|ref|XP_001437400.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124404550|emb|CAK70003.1| unnamed protein product [Paramecium tetraurelia] Length = 277 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 68/275 (24%), Positives = 119/275 (43%), Gaps = 33/275 (12%) Query: 41 LDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDY 98 +D T G G +S+ + ++ LD D + + + ++ F F + + Sbjct: 24 VDCTIGTGAHSQILLEHVKNLKILGLDIDERMIKNLPQNITAKQDNFI----NFYKHKTL 79 Query: 99 VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLT 157 K D + DLG + Q+ G S++K+ LDMR S S +A+D++N + ++L Sbjct: 80 SDTKNFDIIFADLGYNINQVYDESYGLSYKKNSLLDMRYSQSIQHTAADLLNNRSQQELR 139 Query: 158 RILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQAL 217 I G +A+++A I+ RQ F+ + ++ + ++FQAL Sbjct: 140 EIFYHYGNIHKANQLAKIIIDNRQKEKFERANQVVDILNELSM------GDQIMKTFQAL 193 Query: 218 RIFVNNEIEELAQGLRSAEKALKAGGLLI-VVSFHSLEDRLVKKFFASRSGKVMAVRHMI 276 RI VN EI L L + LI +++FHSLE V+KF Sbjct: 194 RIAVNQEINNLNLFLEKVQSQQIVDKQLILIITFHSLEAESVQKFIMKFK---------- 243 Query: 277 PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 + + K + P+++++ N RSRSA L Sbjct: 244 ---------KQFSMKTIKPSEDEIKENPRSRSALL 269 >gi|291546845|emb|CBL19953.1| Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Ruminococcus sp. SR1/5] Length = 282 Score = 193 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 60/217 (27%), Positives = 110/217 (50%), Gaps = 9/217 (4%) Query: 5 SCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNV 61 + + + S + G H+ ++++++I L PG+V DAT G GG++++ + ++ Sbjct: 53 TIEHVISKGNTPAGMHISIMVKEIIDFLEIRPGQVGFDATLGYGGHTKAMLECLRGQGHM 112 Query: 62 IALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDK-GVDGVVFDLGVSSMQ 117 A D DP + ++ + + + ++ F + + + G D ++ DLGVSSMQ Sbjct: 113 YATDVDPEESAKTRKRLAEQGFGEDILTIKLQNFCTIDEIAEEVGGFDFILADLGVSSMQ 172 Query: 118 IDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176 ID RGFSF+ GPLD+R++ +GISA+ ++ + ++L +L +E IA AI Sbjct: 173 IDNPKRGFSFKVDGPLDLRLNQETGISAAQRLDTISREELAGMLDENSDEPYCEEIAKAI 232 Query: 177 VKR-RQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATR 212 R+ TT L +I+KT+ F + Sbjct: 233 TDEIRRGNHIDTTTKLREVIEKTLSFLPEKERKDTVK 269 >gi|210610097|ref|ZP_03288259.1| hypothetical protein CLONEX_00445 [Clostridium nexile DSM 1787] gi|210152609|gb|EEA83615.1| hypothetical protein CLONEX_00445 [Clostridium nexile DSM 1787] Length = 265 Score = 193 bits (490), Expect = 4e-47, Method: Composition-based stats. Identities = 67/218 (30%), Positives = 109/218 (50%), Gaps = 14/218 (6%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 G H+ + +++++ PG+ LDAT G GG++ K ++ ALD DP Sbjct: 48 PAGMHISICVKEILDFFQIEPGQKGLDATLGYGGHTLEMLKCLKGEGHLYALDIDPIESV 107 Query: 73 CGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQ 128 +E +++ E S+ F+ + V + G D ++ DLGVSSMQID DRGF+++ Sbjct: 108 KTKERLKNLGYGEEMLSIRHLNFADIDQVVEEAGPFDFILADLGVSSMQIDNPDRGFTYK 167 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQ 186 G LD+R++ G SA++ + +L +L +E A+ IA ++K+ RQ Sbjct: 168 SEGSLDLRLNPEKGESAAERLKNVTEDELEGMLVENSDEPYAAEIAQQVMKKLRQGEMID 227 Query: 187 TTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRI 219 TT L I++ + F K R+FQALRI Sbjct: 228 TTTKLYETIEEALSFIPEKERKEAVKKSCQRTFQALRI 265 >gi|198431221|ref|XP_002121456.1| PREDICTED: similar to methyltransferase 5 domain containing 1 [Ciona intestinalis] Length = 343 Score = 192 bits (488), Expect = 7e-47, Method: Composition-based stats. Identities = 68/200 (34%), Positives = 108/200 (54%), Gaps = 14/200 (7%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRD 67 S H+PV+ E++++ LN G VI+D TFGAGG+++ + VIALDRD Sbjct: 26 SRPNSKEAALHIPVMAEELVSGLNIKRGDVIIDMTFGAGGHTKFIMENYKHCKVIALDRD 85 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGD 122 A Q+ + +K + FS+L + + G+ + + D G SSMQ D + Sbjct: 86 EKAFEIAQDLSKKFKGRIIPLLGKFSELDKLLSENGIVENSLNAALLDAGCSSMQFDQPE 145 Query: 123 RGFSFQKSGPLDMRMSCSG----ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178 RGFS + GPLDMRM + I+A+DVVN + ++LT I+ G+E+ A I+ +I++ Sbjct: 146 RGFSLVRDGPLDMRMDGNRSEGQITAADVVNNLDEEELTEIIYKYGDERNARNISSSIIE 205 Query: 179 RRQSAPFQTTQDLSSLIQKT 198 R P TT +L+ ++ Sbjct: 206 NR---PISTTLELARVVSMA 222 >gi|314923253|gb|EFS87084.1| MraW methylase family protein [Propionibacterium acnes HL001PA1] gi|314967020|gb|EFT11119.1| MraW methylase family protein [Propionibacterium acnes HL082PA2] gi|314980976|gb|EFT25070.1| MraW methylase family protein [Propionibacterium acnes HL110PA3] gi|315091635|gb|EFT63611.1| MraW methylase family protein [Propionibacterium acnes HL110PA4] gi|315093059|gb|EFT65035.1| MraW methylase family protein [Propionibacterium acnes HL060PA1] gi|315103167|gb|EFT75143.1| MraW methylase family protein [Propionibacterium acnes HL050PA2] gi|327327840|gb|EGE69616.1| MraW methylase family protein [Propionibacterium acnes HL103PA1] Length = 201 Score = 192 bits (488), Expect = 7e-47, Method: Composition-based stats. Identities = 71/187 (37%), Positives = 98/187 (52%), Gaps = 3/187 (1%) Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193 MRM S G +A+ ++N+++ DL R+L GEEK A RI AIV R P +T+ L Sbjct: 1 MRMDQSSGRTAAQILNESDPGDLVRMLREYGEEKFADRIVRAIVTERDRQPIETSGRLVE 60 Query: 194 LIQKTVYF--SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 +I + + + HPA R+FQALRI VN E+E L L A L GG + V+S+H Sbjct: 61 IITEAIPATVRRKRHSHPAKRTFQALRIAVNREMETLPAVLPRALNRLDVGGRIAVLSYH 120 Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311 SLEDR VK+ F + + A F +T+ P ++VA N RS SA+L Sbjct: 121 SLEDRPVKEAFRDACADTAPTGLPMVPESMAAKFNPVTRGAERPDADEVATNPRSASARL 180 Query: 312 RAGMRTV 318 R R Sbjct: 181 RVIGRVR 187 >gi|167947445|ref|ZP_02534519.1| S-adenosylmethyl transferase MraW [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 172 Score = 191 bits (487), Expect = 1e-46, Method: Composition-based stats. Identities = 60/162 (37%), Positives = 87/162 (53%), Gaps = 1/162 (0%) Query: 157 TRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQA 216 +L G+E+ A RIA AIV RQ P TT L+ ++ + + HPATRSFQA Sbjct: 12 ADVLKRYGDERHARRIARAIVAARQVEPILTTGRLAEIVSAANPAWEKGK-HPATRSFQA 70 Query: 217 LRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI 276 +RIF+N E+++L Q L + L+ GG L V+SFHSLEDR+VK+F ++ + Sbjct: 71 IRIFINRELDDLQQFLGQVLEVLRPGGRLAVISFHSLEDRIVKRFMRDQAKGDRFPAGVP 130 Query: 277 PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318 + A + K + P ++ N R+RSA LR R Sbjct: 131 VTQAQLQPRLKLLGKAIRPGADETESNPRARSAVLRVAERLA 172 >gi|328462958|gb|EGF34770.1| S-adenosyl-methyltransferase MraW [Lactobacillus rhamnosus MTCC 5462] Length = 231 Score = 191 bits (486), Expect = 1e-46, Method: Composition-based stats. Identities = 60/179 (33%), Positives = 82/179 (45%), Gaps = 9/179 (5%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73 T H VLL++ A L +DAT G GG++R +IA D+D A++ Sbjct: 48 TEFKHETVLLKEATAALAVKSDGTYVDATLGRGGHTRQILNQLTNGRLIAFDQDEAAIAA 107 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130 Q +L F L + D VDGV++DLGVSS Q D RGFS++ Sbjct: 108 VTRQFGTLPPQLTLVHRNFRDLGAALADLDIRQVDGVLYDLGVSSPQFDDSKRGFSYRFD 167 Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIA---HAIVKRRQSAPF 185 PLDMRM + A VN+ +L RI GEE SR+ +V +R+ P Sbjct: 168 APLDMRMDQRQTLDAKTXVNEWPYAELVRIFSRYGEEHFLSRLRVELSKLVPKRRLQPL 226 >gi|323222501|gb|EGA06871.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] Length = 149 Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats. Identities = 57/147 (38%), Positives = 83/147 (56%), Gaps = 11/147 (7%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75 H VLL++ + LN P + +D TFG GG+SR ++A+DRDP A++ Q Sbjct: 6 KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAQ 65 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 +FS+ FS L DYV ++ +DG++ DLGVSS Q+D +RGFSF + G Sbjct: 66 TI---NDPRFSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFMRDG 122 Query: 132 PLDMRMSCS-GISASDVVNQANVKDLT 157 PLDMRM + G SA++ + A D+ Sbjct: 123 PLDMRMDPTRGQSAAEWLQTAEEADIA 149 >gi|266624101|ref|ZP_06117036.1| MraW methylase family protein [Clostridium hathewayi DSM 13479] gi|288864070|gb|EFC96368.1| MraW methylase family protein [Clostridium hathewayi DSM 13479] Length = 150 Score = 190 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 51/150 (34%), Positives = 84/150 (56%), Gaps = 2/150 (1%) Query: 170 SRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEEL 228 IA IV+ R++ +TT +L+ +I++ V + HP+ ++FQA+RI +N E+E L Sbjct: 1 KNIAKHIVRARETKRIETTGELTEIIKEAVPAKVRAVGGHPSKKTFQAIRIELNQELEVL 60 Query: 229 AQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQS 287 + + L GG L V++FHSLEDR+VK F + + + + Sbjct: 61 NNSIDTMIDLLNPGGRLAVITFHSLEDRIVKIRFRNNENPCTCPPDFPVCVCGKVSKGRV 120 Query: 288 ITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 IT+K VVP++E++ N+RS+S+KLR R Sbjct: 121 ITRKPVVPSEEEINGNKRSKSSKLRVFERI 150 >gi|82595835|ref|XP_726012.1| s-adenosyl-methyltransferase Mraw [Plasmodium yoelii yoelii str. 17XNL] gi|23481241|gb|EAA17577.1| s-adenosyl-methyltransferase mraw-related [Plasmodium yoelii yoelii] Length = 493 Score = 190 bits (483), Expect = 3e-46, Method: Composition-based stats. Identities = 86/336 (25%), Positives = 151/336 (44%), Gaps = 69/336 (20%) Query: 35 APGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQETMRDY--KEQFSLFQA 90 + ++DAT G GG++ K N+ I++D+D A+ + +R Y K + + Sbjct: 174 KEDEYLIDATLGGGGHTLEMLKKFKNLKVISIDKDIEAIYYNKYKLRSYINKNRLKIIHG 233 Query: 91 TFSQLQDYVPDKGV------DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC----- 139 + + + + ++ DLGVS+ QI RGFS++ + LDM M+ Sbjct: 234 NYKDILFLLNYYSLPIFNTYSAILVDLGVSTHQIKSSKRGFSYKYNDILDMNMNKYTEKE 293 Query: 140 -------------------------------------SGISASDVVNQANVKDLTRILGI 162 G +++N N+K L I+ Sbjct: 294 YIENHINKELKQDTKIKELYMINESHDDDKNIYHKNYDGKKIHNILNTYNLKKLKYIIQK 353 Query: 163 LGEEKQASRIAHAIVKRRQS-APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFV 221 GEEK+A +IA I++ R+ TT DL ++I T + + +R FQ+ RI++ Sbjct: 354 FGEEKKAYKIAKKIIEWRKKNGEIITTFDLKNIILSTCKNNYKSNNKVLSRVFQSFRIYI 413 Query: 222 NNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH 281 NNE+ L L S+ K LK GG+LI++S+HSLE++ + F +++ Sbjct: 414 NNELLSLKNLLLSSHKILKQGGVLILISYHSLENKYIDLFVKNKTK-------------- 459 Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 ++ I + ++PT ++V N+ SRSAK+ A + Sbjct: 460 --LWNQINIQPIIPTNQEVKLNKSSRSAKMFAFKKI 493 >gi|300175849|emb|CBK21845.2| unnamed protein product [Blastocystis hominis] Length = 221 Score = 186 bits (474), Expect = 3e-45, Method: Composition-based stats. Identities = 68/212 (32%), Positives = 106/212 (50%), Gaps = 12/212 (5%) Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKG---------VDGVVFDLGVSSMQIDCGDRGFSF 127 + Y+ + S+ TF+ Y+ +G + DLG +S+ +D DRGFSF Sbjct: 8 RLAPYQSRVSIITDTFANTYKYLNQMNDSNASFATKANGTLLDLGFNSVHVDEADRGFSF 67 Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQ--ASRIAHAIVKRRQSAP 184 QK GPLDMR S GI+A+D+VNQ + LT I E +A I +RR+ Sbjct: 68 QKDGPLDMRYDPSQGITAADLVNQLDRDSLTAIFAEYSGETYRTCRHVASVICRRREKQQ 127 Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 F T D ++ + K + K +R P T FQALRI VNNE + L + + + + GG+ Sbjct: 128 FTNTIDFATCVNKALESGKRSRKTPCTGIFQALRISVNNEYDHLNKFMETLPAMMAPGGI 187 Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI 276 + + F SLE ++VK++ + + + Sbjct: 188 SVFLCFQSLEVQIVKRWVRQYFSDCKSDKPPV 219 >gi|294670599|ref|ZP_06735478.1| hypothetical protein NEIELOOT_02324 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307724|gb|EFE48967.1| hypothetical protein NEIELOOT_02324 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 180 Score = 184 bits (468), Expect = 2e-44, Method: Composition-based stats. Identities = 64/178 (35%), Positives = 97/178 (54%), Gaps = 4/178 (2%) Query: 149 NQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIH 208 A+ ++ ++ GEE+ + +IA AIV +R TT L+ + + V + + Sbjct: 1 MSADEDEIHEVIKNYGEERFSRQIARAIVAQRAVGSIDTTGKLAQIAAQNVRTRERGQ-D 59 Query: 209 PATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGK 268 PATR+FQA+RIF+N E+EE+A L A LK+GG L V++FHSLEDR+VK+F S Sbjct: 60 PATRTFQAIRIFINRELEEIAAVLPQAAGRLKSGGRLAVIAFHSLEDRIVKQFIKRYSTH 119 Query: 269 VMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIED 324 + ++ +SI K + + ++VA N R+RSA LR RT ED Sbjct: 120 APLPKWAAVREADLPQPPLKSI-GKAIKASADEVAANPRARSAVLRIAERTDGIFSED 176 >gi|266624100|ref|ZP_06117035.1| S-adenosyl-methyltransferase MraW [Clostridium hathewayi DSM 13479] gi|288864078|gb|EFC96376.1| S-adenosyl-methyltransferase MraW [Clostridium hathewayi DSM 13479] Length = 167 Score = 183 bits (466), Expect = 3e-44, Method: Composition-based stats. Identities = 58/166 (34%), Positives = 98/166 (59%), Gaps = 8/166 (4%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73 + +H VLL + I LN P + +D T G GG++ C+ +I +D+D A++ Sbjct: 2 MFEHKSVLLYEAIDSLNVKPDGIYVDGTLGGGGHALEVCRRLGEYGRLIGIDQDADAIAA 61 Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQ-K 129 E +RDY+++ ++ ++ + ++Q + D G+ DG+ DLGVSS Q+D +RGF+++ + Sbjct: 62 ASERLRDYEDRVTIVRSNYEEIQSVLKDLGIEKADGIYLDLGVSSYQLDTPERGFTYREE 121 Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAH 174 PLDMRM + +A+D+VN + DL RI+ GE+K A IA Sbjct: 122 DAPLDMRMDQRNTRTAADIVNTYSEFDLYRIIRDYGEDKFAKNIAK 167 >gi|123225262|emb|CAM17437.1| methyltransferase 5 domain containing 1 [Mus musculus] gi|123231530|emb|CAM24680.1| methyltransferase 5 domain containing 1 [Mus musculus] Length = 230 Score = 182 bits (462), Expect = 7e-44, Method: Composition-based stats. Identities = 70/177 (39%), Positives = 98/177 (55%), Gaps = 18/177 (10%) Query: 2 ESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN- 60 E K + M+ H+PV++++V+ L P G+V LD TFG+GG++R+ + + Sbjct: 61 EEKELEAMAKL-------HIPVMVDQVVHCLAPQKGQVFLDMTFGSGGHTRAILQKEPDV 113 Query: 61 -VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVS 114 V ALDRDP A + ++ R Y Q FSQ + + GV DG++ DLG S Sbjct: 114 MVYALDRDPVAYAIAEQLSRLYPTQIQALLGQFSQAEALLMKAGVQPGTIDGILMDLGCS 173 Query: 115 SMQIDCGDRGFSFQKSGPLDMRMS----CSGISASDVVNQANVKDLTRILGILGEEK 167 SMQ+D +RGFS +K GPLDMRM +ASDVVN + + L IL GEEK Sbjct: 174 SMQLDAPERGFSLRKDGPLDMRMDGDRYPDTPTASDVVNALDQQALASILRAYGEEK 230 >gi|119599130|gb|EAW78724.1| hCG2022166, isoform CRA_b [Homo sapiens] Length = 333 Score = 181 bits (461), Expect = 1e-43, Method: Composition-based stats. Identities = 84/309 (27%), Positives = 132/309 (42%), Gaps = 60/309 (19%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H+PV++++V+ L+P G++ LD TFG+GG++++ + S+ + ALDRDP A + + Sbjct: 72 HIPVMVDEVVHCLSPQKGQIFLDMTFGSGGHTKAILQKESDIVLYALDRDPTAYALAEHL 131 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 Y +Q FSQ + + GV DGV+ DLG SSMQ+D +RG S +K GP Sbjct: 132 SELYPKQIRAMLGQFSQAEALLMKAGVQPGTFDGVLMDLGCSSMQLDTPERGSSLRKDGP 191 Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 LD+RM + S + + L + E +T Q Sbjct: 192 LDIRMD-DLLQQSTYIATKTFQALRIFVNNELNELYTG--------------LKTAQKFL 236 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 L + V SF +L E + + L S Sbjct: 237 RLGGRLV-----------ALSFHSL------EDRIVKRFLLGI----------------S 263 Query: 253 LEDRL---VKKFFASRS--GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307 + +R V++ S G + P +++ I KKV+ P +DV N R R Sbjct: 264 MTERFNLSVRQQVMKTSQLGSDHENTEEVSMRRAPLMWELIHKKVLSPQDQDVQDNPRGR 323 Query: 308 SAKLRAGMR 316 SAKLRA ++ Sbjct: 324 SAKLRAAIK 332 >gi|301102540|ref|XP_002900357.1| S-adenosyl-L-methionine-dependent methyltransferase mraW-like protein [Phytophthora infestans T30-4] gi|262102098|gb|EEY60150.1| S-adenosyl-L-methionine-dependent methyltransferase mraW-like protein [Phytophthora infestans T30-4] Length = 221 Score = 176 bits (447), Expect = 4e-42, Method: Composition-based stats. Identities = 63/199 (31%), Positives = 100/199 (50%), Gaps = 16/199 (8%) Query: 20 HVPVLLEKVIALLNPAPGKV-----ILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVS 72 H+PVLL++ + L+ V +D T G GG+SR+ + S ++ +D DP +S Sbjct: 19 HIPVLLQETVTALSRNVSDVSKPLYFVDGTAGFGGHSRAILQRFSDARLLCIDCDPEVLS 78 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 Q + ++ + S +++ L ++ VDG++ DLG +S D RGFS Sbjct: 79 IAQANLSEFHGRVSFQNGSYADLAKHLEAARFPDEVDGILVDLGANSFHFDAARRGFSVL 138 Query: 129 KSGPLDMRMSC---SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS--A 183 GPLDMR + S +A+D VN + LT+I GEE+ A A AIV+ R+ Sbjct: 139 NDGPLDMRFNQLDASLSTAADAVNSLSEVQLTKIFRDYGEERLAKEFAKAIVREREEKGK 198 Query: 184 PFQTTQDLSSLIQKTVYFS 202 F+TT+DL I++ Sbjct: 199 VFETTKDLRECIERIANMR 217 >gi|225708994|gb|ACO10343.1| S-adenosyl-L-methionine-dependent methyltransferase METT5D1 [Caligus rogercresseyi] Length = 366 Score = 176 bits (446), Expect = 5e-42, Method: Composition-based stats. Identities = 90/317 (28%), Positives = 144/317 (45%), Gaps = 36/317 (11%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVSCGQET 77 H PV ++V+ +L P ++ LD T+G GG++ + + VIA DRD ++ Sbjct: 33 HTPVFFQEVLDILRPKKDQIFLDTTYGTGGHTNLILDHQPHARVIASDRDVSSIDLAMRM 92 Query: 78 MRDYK-EQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSG 131 + Y + A FS+L ++ G+ DGV+ D G+S +Q G+RGFS + G Sbjct: 93 GQKYPSGSLNAIVARFSELPRHLIRLGLRENTCDGVIIDCGISDIQW-GGERGFSLK--G 149 Query: 132 PLDMRMSCSG----ISASDVVNQANVKDLTRILGILGEEK-QASRIAHAIVKRRQS-APF 185 PLD+RM +AS+V+ L R L G+ K A +A+AIV+ R F Sbjct: 150 PLDLRMDPERYPETPTASEVLQSIRELPLLRPLKNYGKLKTNAKLVANAIVESRYMFNRF 209 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPAT-----------------RSFQALRIFVNNEIEEL 228 T ++L ++ V FS+ R T R+ ALR+FVN+EI +L Sbjct: 210 TTAEELYEVLLDAVKFSEVRRSLFLTTEEASSWEKAFTESLLHRTLTALRMFVNDEINQL 269 Query: 229 AQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI 288 G+R A LK GGLL+VV E+ ++K + P ++ + Sbjct: 270 EYGVRIASHYLKPGGLLLVVVRGEAEEIALRKTLTEIDFDPILSND--PEILRTLPWKLV 327 Query: 289 TKKVVVPTQEDVAFNRR 305 + ++ D + R Sbjct: 328 GQIPYRLSKADQMLHPR 344 >gi|289426915|ref|ZP_06428641.1| MraW methylase family protein [Propionibacterium acnes J165] gi|289160004|gb|EFD08182.1| MraW methylase family protein [Propionibacterium acnes J165] Length = 178 Score = 174 bits (443), Expect = 1e-41, Method: Composition-based stats. Identities = 62/163 (38%), Positives = 82/163 (50%), Gaps = 2/163 (1%) Query: 158 RILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYF--SKNNRIHPATRSFQ 215 R+L GEEK A RI AIV R P +T+ L +I + + + HPA R+FQ Sbjct: 2 RMLREYGEEKFADRIVRAIVTERDRQPIETSGRLVEIITEAIPATVRRKRHSHPAKRTFQ 61 Query: 216 ALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM 275 ALRI VN E+E L L A L GG + V+S+HSLEDR VK+ F Sbjct: 62 ALRIAVNREMETLPAVLPRALDRLDVGGRIAVLSYHSLEDRPVKEAFRDACADTAPAGLP 121 Query: 276 IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318 + + A F +T+ P ++VA N RS SA+LR R Sbjct: 122 MVPESMAAKFNPVTRGAERPDADEVATNPRSASARLRVIERVR 164 >gi|157869826|ref|XP_001683464.1| S-adenosyl-methyltransferase mraW-like protein [Leishmania major] gi|68126529|emb|CAJ04793.1| S-adenosyl-methyltransferase mraW-like protein [Leishmania major strain Friedlin] Length = 489 Score = 174 bits (443), Expect = 1e-41, Method: Composition-based stats. Identities = 70/296 (23%), Positives = 126/296 (42%), Gaps = 40/296 (13%) Query: 40 ILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQL 95 +LD TFG+G ++ + G + V+A+D D A +E + ++ ++F + S+ Sbjct: 144 VLDCTFGSGFHTGVVLENGRPYTRVVAMDCDVEATVSAREIVDEFGADRFRFYARPMSEA 203 Query: 96 QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ--KSGPLDMRMSCS-GISASDVVNQAN 152 + ++ D V+ D G SS Q++ +RGF LDMR + G+ A + +N Sbjct: 204 KAMFGERSFDAVMIDPGPSSTQLENPERGFLLNDESDHALDMRYGPTHGLGALEYLNTVP 263 Query: 153 VKDLTRIL--GILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVY---------F 201 L+ L L +Q+ ++A AI +RR PF Q + +++ Sbjct: 264 QHALSGALASYELLTPQQSMKLARAIRQRR---PFDGAQRVLEAVEEAGNELPEEGWGTQ 320 Query: 202 SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKF 261 + + +LR VN+E EL++ L++A L+ G L+V S E++L+ Sbjct: 321 GSRRKTSMSWNFMTSLRCIVNHERHELSEALQNALLLLRTDGRLVVFSRLPWEEKLISTT 380 Query: 262 FASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 + +++ IP EDV + SR K+ RT Sbjct: 381 ISQHPHALLSYSEAIPI-------------------EDVQEHGHSRHTKMWIVTRT 417 >gi|322491999|emb|CBZ27273.1| S-adenosyl-methyltransferase mraW-like protein [Leishmania mexicana MHOM/GT/2001/U1103] Length = 489 Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 73/314 (23%), Positives = 130/314 (41%), Gaps = 46/314 (14%) Query: 28 VIALLNPAPGKV------ILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETM 78 + L P + +LD TFG+G ++ + G + V+A+D D A +E + Sbjct: 126 ALDALVPLSKQKRLVSYDVLDCTFGSGFHTGVVLENGRPYTRVVAMDCDLEATVSAREIV 185 Query: 79 RDYK-EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF--QKSGPLDM 135 ++ ++F F S+ + ++ D V+ D G S Q++ +RGF + LDM Sbjct: 186 DEFGADRFRFFARPMSEAKAMFGERSFDAVMIDPGPSLTQLENPERGFLLDDESDHALDM 245 Query: 136 RMSCS-GISASDVVNQANVKDLTRIL--GILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 R + G+ A + +N L+ L L +Q+ ++A AI +RR PF Q + Sbjct: 246 RYGPTHGLGALEYLNTVPQHALSSALASYELLTPQQSMKLARAIRQRR---PFDGAQRVL 302 Query: 193 SLIQKTVY---------FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 +++ + + +LR VN+E EL++ L++A L+ G Sbjct: 303 EAVEEAGNELPEEGWGTQGSRRKTSMSWNFMTSLRCIVNHERHELSEALQNALLLLRTDG 362 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 L+V S E+RL+ + +++ IP EDV + Sbjct: 363 RLVVFSRLPWEERLISTTVSQHPHALLSYSEAIPI-------------------EDVQEH 403 Query: 304 RRSRSAKLRAGMRT 317 SR K+ RT Sbjct: 404 GHSRHTKMWIVTRT 417 >gi|323219910|gb|EGA04388.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] Length = 159 Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 62/160 (38%), Positives = 96/160 (60%), Gaps = 8/160 (5%) Query: 163 LGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVN 222 GEE+ A RIA AIV+R + P T++L+ ++ K+ HPATR+FQA+RI+VN Sbjct: 1 FGEERFAKRIARAIVERNREQPMTRTKELAEVVAAATPV-KDKFKHPATRTFQAVRIWVN 59 Query: 223 NEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHP 282 +E+EE+ Q L+S+ L GG L ++SFHSLEDR+VK+F +S + + A Sbjct: 60 SELEEIEQALKSSLSVLAPGGRLSIISFHSLEDRIVKRFMREQSRGPQIPAGLPMTEAQL 119 Query: 283 AV-----FQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 +++ K ++P +++VA N R+RS+ LR RT Sbjct: 120 KKLGGRELRALGK--LMPGEKEVAENPRARSSVLRIAERT 157 >gi|146087428|ref|XP_001465817.1| S-adenosyl-methyltransferase mraW-like protein [Leishmania infantum JPCM5] gi|134069917|emb|CAM68246.1| S-adenosyl-methyltransferase mraW-like protein [Leishmania infantum JPCM5] Length = 489 Score = 172 bits (437), Expect = 6e-41, Method: Composition-based stats. Identities = 69/296 (23%), Positives = 126/296 (42%), Gaps = 40/296 (13%) Query: 40 ILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQL 95 +LD TFG+G ++ + G + V+A+D D A +E + ++ ++F + S+ Sbjct: 144 VLDCTFGSGFHTGVVLENGRPYTRVVAMDCDVEATVSAREIVDEFGADRFRFYARPMSEA 203 Query: 96 QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF--QKSGPLDMRMSCS-GISASDVVNQAN 152 + ++ D V+ D G S Q++ +RGF + LDMR + G+ A + +N Sbjct: 204 KAMFGERSFDAVMIDPGPSLTQLENPERGFLLDDESDHALDMRYGPTHGLGALEYLNTVP 263 Query: 153 VKDLTRIL--GILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSK------- 203 L+ L L +Q+ ++A AI +RR PF Q + +++ Sbjct: 264 QHALSGALASYELLTPQQSMKLARAIRQRR---PFDGAQRVLEAVEEAGNELPEEGWGTQ 320 Query: 204 --NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKF 261 + + +LR VN+E EL++ L++A L+ G L+V S E++L+ Sbjct: 321 DSRRKTSMSWNFMTSLRCIVNHERHELSEALQNALLLLRTDGRLVVFSRLPWEEKLISTT 380 Query: 262 FASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 + +++ IP EDV + SR K+ RT Sbjct: 381 ISQHPHALLSYSEAIPI-------------------EDVQDHGHSRHTKMWIATRT 417 >gi|322499261|emb|CBZ34334.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 489 Score = 172 bits (437), Expect = 7e-41, Method: Composition-based stats. Identities = 69/296 (23%), Positives = 126/296 (42%), Gaps = 40/296 (13%) Query: 40 ILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQL 95 +LD TFG+G ++ + G + V+A+D D A +E + ++ ++F + S+ Sbjct: 144 VLDCTFGSGFHTGVVLENGRPYTRVVAMDCDVEATVSAREIVDEFGADRFRFYARPMSEA 203 Query: 96 QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF--QKSGPLDMRMSCS-GISASDVVNQAN 152 + ++ D V+ D G S Q++ +RGF + LDMR + G+ A + +N Sbjct: 204 KAMFGERSFDAVMIDPGPSLTQLENPERGFLLDDESDHALDMRYGPTHGLGALEYLNTVP 263 Query: 153 VKDLTRIL--GILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSK------- 203 L+ L L +Q+ ++A AI +RR PF Q + +++ Sbjct: 264 QHALSGALASYELLTPQQSMKLARAIRQRR---PFDGAQRVLEAVEEAGNELPEEGWGTQ 320 Query: 204 --NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKF 261 + + +LR VN+E EL++ L++A L+ G L+V S E++L+ Sbjct: 321 DSRRKTSMSWNFMTSLRCIVNHERHELSEALQNALLLLRTDGRLVVFSRLPWEEKLISTT 380 Query: 262 FASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 + +++ IP EDV + SR K+ RT Sbjct: 381 ISQHPHALLSYSEAIPI-------------------EDVQDHGHSRHTKMWIATRT 417 >gi|13924472|gb|AAK49020.1|AF195898_1 hypothetical protein [Synechococcus sp. PCC 7002] Length = 136 Score = 170 bits (432), Expect = 3e-40, Method: Composition-based stats. Identities = 48/133 (36%), Positives = 76/133 (57%), Gaps = 5/133 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCGQE 76 H+ VL E+++A L P LD T G GG++ + +V +DRD A++ E Sbjct: 6 KHISVLKEELVAGLGVKPEGHYLDVTLGGGGHTELILQQYPDVRVTGVDRDSQAIAAASE 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 ++ + ++F ++ F + Q + DG++ DLGVSS+Q D GDRGFSF+ PLDMR Sbjct: 66 RLKSFGDRFRAVRSNFGEYQP--QGEKFDGIIADLGVSSVQFDQGDRGFSFRFDAPLDMR 123 Query: 137 MSCSG-ISASDVV 148 M ++A+D+V Sbjct: 124 MDQQQTLTAADIV 136 >gi|317473098|ref|ZP_07932397.1| MraW methylase [Anaerostipes sp. 3_2_56FAA] gi|316899436|gb|EFV21451.1| MraW methylase [Anaerostipes sp. 3_2_56FAA] Length = 260 Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats. Identities = 54/176 (30%), Positives = 93/176 (52%), Gaps = 8/176 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 G H+ + +++++ L PG+ LDAT G GG+++ K ++ ALD D + Sbjct: 74 PAGMHISICVKEILEFLQIKPGQTGLDATLGYGGHTQEMLKCLDSKGHLYALDVDAIELE 133 Query: 73 CGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQ 128 ++ + E ++ Q F+ + + G D V+ DLGVSSMQID DRGFS++ Sbjct: 134 KTRKRLEKLGYGPEILTIRQMNFADIDKIAEEAGPFDFVLADLGVSSMQIDNPDRGFSYK 193 Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 GPLD+R++ G+SA++ + ++L +L +E A IA A+V + + Sbjct: 194 TEGPLDLRLNPEKGVSAAERLRTITRQELQGMLMENSDEPHADVIARAVVSKIKKG 249 >gi|33866828|ref|NP_898387.1| hypothetical protein SYNW2298 [Synechococcus sp. WH 8102] gi|33639429|emb|CAE08813.1| conserved hypothetical protein [Synechococcus sp. WH 8102] Length = 215 Score = 168 bits (427), Expect = 9e-40, Method: Composition-based stats. Identities = 59/208 (28%), Positives = 101/208 (48%), Gaps = 10/208 (4%) Query: 13 IHHTIGDHVPVLLEKVIAL--LNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDP 68 + + HVPVL E V+ P +++DAT G GG+S + +I LD+D Sbjct: 1 MPAPLFSHVPVLSEAVMDAGRQMPRAEGLLIDATLGGGGHSALMLEQQPGLRLIGLDQDA 60 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 A + E + + ++ ++ F+ +Y P + V+ DLGVSS Q+D +RGFSF+ Sbjct: 61 TARAAAAERLAPFGDRVTIVATNFA---EYTPPEPALMVLADLGVSSPQLDVAERGFSFR 117 Query: 129 KSGPLDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ-SAPF 185 GPLDMRM+ G +A++++++ +L ++ GEE+ + RIA I + Sbjct: 118 LDGPLDMRMNAVGDGATAAELIDRLEENELADLIYAYGEERLSRRIARRIKADLAVQGAY 177 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRS 213 T L+ + R P+ + Sbjct: 178 SGTAALAYAVAGCYPPQGTPRKDPSRHT 205 >gi|294670598|ref|ZP_06735477.1| hypothetical protein NEIELOOT_02323 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307723|gb|EFE48966.1| hypothetical protein NEIELOOT_02323 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 146 Score = 168 bits (427), Expect = 9e-40, Method: Composition-based stats. Identities = 49/134 (36%), Positives = 68/134 (50%), Gaps = 7/134 (5%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69 + HV VLL + + LN V +D TFG GG+SR ++ D+DP Sbjct: 1 MSSQEFQHVTVLLHEAVDGLNVVSDGVYVDGTFGRGGHSRLILSRLGEKGRLVVFDKDPQ 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFS 126 A++ E + + S+ FS Q + G +DG +FDLG+SS QID G RGFS Sbjct: 61 AIAVAHE-LAARDGRVSVIHDGFSSFQTALDGLGIGQIDGTLFDLGISSPQIDDGSRGFS 119 Query: 127 FQKSGPLDMRMSCS 140 F+ PLDMRM + Sbjct: 120 FRFDAPLDMRMDTT 133 >gi|295115795|emb|CBL36642.1| Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [butyrate-producing bacterium SM4/1] Length = 299 Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats. Identities = 52/196 (26%), Positives = 96/196 (48%), Gaps = 11/196 (5%) Query: 3 SKSCKTMSSAIHH---TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG- 58 K T+ I G H+ + +++++ + PG+V LDAT G GG++R K Sbjct: 66 EKYRDTVEKVIQKGGTPAGMHISICVKEILDFFDIRPGQVGLDATLGYGGHTREMLKKLQ 125 Query: 59 --SNVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLG 112 ++ LD DP ++ + D + ++ F+ + + G D ++ DLG Sbjct: 126 GQGHIYGLDVDPIESEKTKKRLADAGFGPDILTVKLMNFADIDKVAEEAGPFDFILADLG 185 Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASR 171 VSSMQID +RGF+++ GPLD+RM + G +A++ + + ++ +L +E A Sbjct: 186 VSSMQIDNPERGFTYKYEGPLDLRMDPTRGETAAERLKGMDREEFCGMLMENSDEPYAEE 245 Query: 172 IAHAIVKRRQSAPFQT 187 I+H + R ++ Sbjct: 246 ISHTVFSRLETGRKDR 261 >gi|261330354|emb|CBH13338.1| S-adenosyl-methyltransferase mraW-like protein,putative [Trypanosoma brucei gambiense DAL972] Length = 474 Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats. Identities = 70/295 (23%), Positives = 128/295 (43%), Gaps = 40/295 (13%) Query: 40 ILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQL 95 +LD T G+G ++ + + G V+ALD D A+ ++ + ++ ++F + S+ Sbjct: 130 VLDCTLGSGYHAGAVLENGGPYTRVVALDCDHDAMHAARDLVEEFGGDRFRFYCCKMSEA 189 Query: 96 QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG--PLDMRMSCS-GISASDVVNQAN 152 + ++ D ++ D GVS Q++ +RGF G LDMR G+ A + +N + Sbjct: 190 KAMFGERSFDAIMIDGGVSDTQLEDPERGFLLDDEGGHRLDMRFGPQMGVGALEYLNTVS 249 Query: 153 VKDLTRILGILG--EEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT--------VYFS 202 L L + G E QA +++ AI +R PF ++++ + I++ Sbjct: 250 QHTLVSSLLVYGLLEYGQAMKMSRAITRR---KPFVDSREVLTCIEQAGDELPEGGWRSQ 306 Query: 203 KNNRIHPATRSF-QALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKF 261 + R P + F +LR +NNE+ EL QG+ +A L+ G L+V S E+RLV+ Sbjct: 307 GSRRKSPMSWKFLTSLRCIINNEMYELRQGIENALLMLRDDGRLVVFSRLPWEERLVRGT 366 Query: 262 FASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 +++ I + + R AK+ R Sbjct: 367 VDDHPHALLSYVEDISIDDVQIYGFT-------------------RHAKMWVITR 402 >gi|320169060|gb|EFW45959.1| methyltransferase [Capsaspora owczarzaki ATCC 30864] Length = 642 Score = 166 bits (420), Expect = 5e-39, Method: Composition-based stats. Identities = 68/226 (30%), Positives = 113/226 (50%), Gaps = 22/226 (9%) Query: 32 LNP-APGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRD----YKE 83 L P P ++LDATFGAGG+S + + + A+DRDP A+ ++ + + Sbjct: 218 LAPTRPPLILLDATFGAGGHSAALLRHAPPNTTLFAIDRDPDAIQRAEQLGQTNSLFHSS 277 Query: 84 QFSLFQATFSQLQDYVPDKG-----VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138 +F Q +FSQ++ V D+G VDG++ D+G S Q+D RGFSF GPLDMRM Sbjct: 278 RFRPLQGSFSQMRQLVADQGIQPGSVDGILMDIGFCSTQVDDATRGFSFLCDGPLDMRMG 337 Query: 139 CSG-------ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 +A+ V+ ++LT IL + GE +A IA AIV+ R++ P Q+T L Sbjct: 338 AGTAFELAAIPTAATVLATLRCEELTHILRLYGELPKARAIADAIVRTRKTTPIQSTLQL 397 Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237 + + ++ V+ + ++ ++ ++ + L Sbjct: 398 ADIARRAVFS--EAEYKEWQLHWDKIKAYLQSQRSQSPTVLSQMLD 441 Score = 102 bits (255), Expect = 8e-20, Method: Composition-based stats. Identities = 45/167 (26%), Positives = 66/167 (39%), Gaps = 46/167 (27%) Query: 198 TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRL 257 F PA + FQALR+FVN+EI EL GL A L+ GG L V++F E Sbjct: 476 AFRFQGRKVKDPARQVFQALRVFVNDEISELRAGLGQAIALLRPGGRLAVITFQGAETTA 535 Query: 258 VKKFFAS-----------------------RSGKVMAVRHM----------------IPS 278 +++F S RS RH+ + S Sbjct: 536 LRRFLQSPTAILAADSVRSLDEDAPAASNARSADSSRPRHISLNDRFLAQKLQEFEQMQS 595 Query: 279 NAHPAVF-------QSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318 N P F ++ K + P++ ++ N R+RSAKL R++ Sbjct: 596 NNDPTHFPTSRALPLTVLHKAIGPSEHEIHRNPRARSAKLHVFERSL 642 >gi|72392687|ref|XP_847144.1| S-adenosyl-methyltransferase mraW-like protein [Trypanosoma brucei TREU927] gi|62176037|gb|AAX70159.1| S-adenosyl-methyltransferase mraW-like protein, putative [Trypanosoma brucei] gi|70803174|gb|AAZ13078.1| S-adenosyl-methyltransferase mraW-like protein, putative [Trypanosoma brucei brucei strain 927/4 GUTat10.1] Length = 474 Score = 164 bits (417), Expect = 1e-38, Method: Composition-based stats. Identities = 69/295 (23%), Positives = 126/295 (42%), Gaps = 40/295 (13%) Query: 40 ILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQL 95 +LD T G+G ++ + + G V+ALD D A+ ++ + ++ ++ + S+ Sbjct: 130 VLDCTLGSGYHAGAVLENGGPYTRVVALDCDHDAMHAARDLVEEFGGDRLRFYCCKMSEA 189 Query: 96 QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG--PLDMRMSCS-GISASDVVNQAN 152 + ++ D ++ D GVS Q++ +RGF G LDMR G+ A + +N + Sbjct: 190 KAMFGERSFDAIMIDGGVSDTQLEDPERGFLLDDEGGHRLDMRFGPQMGVGALEYLNTVS 249 Query: 153 VKDLTRILGILG--EEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT--------VYFS 202 L L G E QA +++ AI +R PF ++++ + I++ Sbjct: 250 QHTLVSSLLAYGLLEYGQAMKMSRAITRR---KPFVDSREVLTCIEQAGDELPEGGWRSQ 306 Query: 203 KNNRIHPATRSF-QALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKF 261 + R P + F +LR +NNE+ EL QG+ +A L+ G L+V S E+RLV+ Sbjct: 307 GSRRKSPMSWKFLTSLRCIINNEMYELRQGIENALLMLRDDGRLVVFSRLPWEERLVRGT 366 Query: 262 FASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 +++ I + + R AK+ R Sbjct: 367 VDDHPHALLSYVEDISIDDVQIYGFT-------------------RHAKMWVITR 402 >gi|325914208|ref|ZP_08176560.1| putative S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Xanthomonas vesicatoria ATCC 35937] gi|325539592|gb|EGD11236.1| putative S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Xanthomonas vesicatoria ATCC 35937] Length = 146 Score = 163 bits (412), Expect = 5e-38, Method: Composition-based stats. Identities = 53/138 (38%), Positives = 76/138 (55%), Gaps = 5/138 (3%) Query: 12 AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDP 68 + HVPVL +V+ L G LD TFG GG++R + G ++ +D+DP Sbjct: 10 PVSQPPAAHVPVLYTQVLDGLQVTEGGAYLDGTFGRGGHARGVLQHLGPGGRLLVMDKDP 69 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 A++ ++T + S+ + +F+ L V VDG++ DLGVSS Q+D RGFSF Sbjct: 70 EAIAVAEQTFGG-DARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLDVAGRGFSFG 128 Query: 129 KSGPLDMRMSCS-GISAS 145 K GPLDMRM G SA+ Sbjct: 129 KDGPLDMRMDPDAGQSAA 146 >gi|322505001|emb|CAM36637.2| S-adenosyl-methyltransferase mraW-like protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 491 Score = 163 bits (412), Expect = 6e-38, Method: Composition-based stats. Identities = 69/314 (21%), Positives = 132/314 (42%), Gaps = 46/314 (14%) Query: 28 VIALLNPAPGK----VI--LDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETM 78 V+ L + LD TFG+G ++ + G + V+A+D D A ++ Sbjct: 128 VLDALVLREKQKRLVTYDVLDCTFGSGFHTGVVLENGRPYTRVVAMDCDVAATVSARKIA 187 Query: 79 RDYK-EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF--QKSGPLDM 135 ++ ++F + S+ + ++ D V+ D G S Q++ +RGF + LDM Sbjct: 188 DEFGAKRFRFYARPMSEAKAMFGERSFDAVMIDPGPSFTQLENPERGFLLGDESDHALDM 247 Query: 136 RMSC-SGISASDVVNQANVKDLTRIL--GILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 R + A + +N L+ L L +Q+ ++A AI +RR PF + Sbjct: 248 RYGLMYKLGALEYLNTVPQHALSGALASYELLTPQQSMKLARAIRQRR---PFGGAHRVL 304 Query: 193 SLIQKT--------VYFSKNNRIHPATRSF-QALRIFVNNEIEELAQGLRSAEKALKAGG 243 ++++ + R + +F +LR VN+E +EL++ L++A L+A G Sbjct: 305 EVVEEAGNELPEEGWMSQGSRRKTSMSWNFITSLRCIVNHERQELSEALQNALLLLRADG 364 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 L+V S E++L+ + +++ +IP ++V + Sbjct: 365 RLVVFSRLLWEEKLISATISQHPHALLSYSEVIPI-------------------DEVQEH 405 Query: 304 RRSRSAKLRAGMRT 317 SR K+ RT Sbjct: 406 GHSRHTKMWIVTRT 419 >gi|332836125|ref|XP_508346.3| PREDICTED: methyltransferase like 15 isoform 2 [Pan troglodytes] Length = 279 Score = 161 bits (409), Expect = 1e-37, Method: Composition-based stats. Identities = 52/131 (39%), Positives = 79/131 (60%), Gaps = 7/131 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H+PV++++V+ L+P G++ LD TFG+GG++++ + S+ + ALDRDP A + + Sbjct: 72 HIPVMVDEVVHCLSPQKGQIFLDMTFGSGGHTKAILQKESDIVLYALDRDPTAYALAEHL 131 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 Y +Q FSQ + + GV DGV+ DLG SSMQ+D +RGFS +K GP Sbjct: 132 SELYPKQIRAMLGQFSQAEALLMKAGVQPGTFDGVLMDLGCSSMQLDTPERGFSLRKDGP 191 Query: 133 LDMRMSCSGIS 143 LDMRM + Sbjct: 192 LDMRMDGGRST 202 >gi|119588673|gb|EAW68267.1| methyltransferase 5 domain containing 1, isoform CRA_b [Homo sapiens] Length = 279 Score = 161 bits (409), Expect = 1e-37, Method: Composition-based stats. Identities = 52/131 (39%), Positives = 79/131 (60%), Gaps = 7/131 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H+PV++++V+ L+P G++ LD TFG+GG++++ + S+ + ALDRDP A + + Sbjct: 72 HIPVMVDEVVHCLSPQKGQIFLDMTFGSGGHTKAILQKESDIVLYALDRDPTAYALAEHL 131 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 Y +Q FSQ + + GV DGV+ DLG SSMQ+D +RGFS +K GP Sbjct: 132 SELYPKQIRAMLGQFSQAEALLMKAGVQPGTFDGVLMDLGCSSMQLDTPERGFSLRKDGP 191 Query: 133 LDMRMSCSGIS 143 LDMRM + Sbjct: 192 LDMRMDGGRST 202 >gi|115727005|ref|XP_001191227.1| PREDICTED: similar to methyltransferase 5 domain containing 1, partial [Strongylocentrotus purpuratus] gi|115891754|ref|XP_001186015.1| PREDICTED: similar to methyltransferase 5 domain containing 1, partial [Strongylocentrotus purpuratus] Length = 194 Score = 161 bits (408), Expect = 1e-37, Method: Composition-based stats. Identities = 65/193 (33%), Positives = 104/193 (53%), Gaps = 16/193 (8%) Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQTTQDLSSLIQK 197 S +A+DVVN + LT+IL GEE A +IA AI+ R + F +T +L+++I Sbjct: 2 PSQPTAADVVNSLDHVTLTQILRTYGEESNAKKIAQAIIDYRTNFNTFSSTSELATVIA- 60 Query: 198 TVYFSKNNRI---------HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 + ++ + H AT++FQALRIFVNNE+ ELA + +A ++ GG L V+ Sbjct: 61 CCHTHRDAKSNRDKLGRHAHTATKTFQALRIFVNNELNELAVAVEAAWDLMRPGGKLAVL 120 Query: 249 SFHSLEDRLVKKFFA-----SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 +FHSLEDR+VK+ R + R + ++ + + + E++ N Sbjct: 121 TFHSLEDRVVKRSLQGRHVAERGTSLRQKRVESHKDNGAQKWEVVKRNELCADDEEINMN 180 Query: 304 RRSRSAKLRAGMR 316 R+RSAKLR ++ Sbjct: 181 PRARSAKLRTAIK 193 >gi|46203082|ref|ZP_00052107.2| COG0275: Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Magnetospirillum magnetotacticum MS-1] Length = 141 Score = 161 bits (408), Expect = 1e-37, Method: Composition-based stats. Identities = 60/140 (42%), Positives = 82/140 (58%), Gaps = 5/140 (3%) Query: 42 DATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYV 99 D TFGAGGY+R+ VIA+DRDP A+ G + + + L Q F L + Sbjct: 2 DGTFGAGGYTRALLDAAPEAQVIAIDRDPTAIRAGADLVAAANGRLRLIQGRFGDLDTLL 61 Query: 100 PDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDL 156 ++G D VV D+GVSSMQ+D RGFSF++ GPLDMRM G +A+D+VN+ L Sbjct: 62 AEQGEAQADWVVLDIGVSSMQLDEAHRGFSFRQDGPLDMRMGGEGPTAADLVNETEEGML 121 Query: 157 TRILGILGEEKQASRIAHAI 176 IL GEE+++ +A AI Sbjct: 122 ADILYHFGEERRSRAVARAI 141 >gi|255024442|ref|ZP_05296428.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL J1-208] Length = 126 Score = 160 bits (406), Expect = 2e-37, Method: Composition-based stats. Identities = 41/122 (33%), Positives = 68/122 (55%), Gaps = 1/122 (0%) Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 ++ HP R+FQA+RI VN+E+ + L A LK GG + V++FHSLEDR Sbjct: 3 AIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLLKPGGRISVITFHSLEDR 62 Query: 257 LVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315 + K+ F + + + + + + F+ T+K +VP++E++ N R+RSAKLR Sbjct: 63 ITKQLFQEATKRPDLPPGLPVIPDEYKPDFKLATRKPIVPSEEELEQNNRARSAKLRVIE 122 Query: 316 RT 317 + Sbjct: 123 KI 124 >gi|289426838|ref|ZP_06428564.1| MraW methylase family protein [Propionibacterium acnes J165] gi|289159927|gb|EFD08105.1| MraW methylase family protein [Propionibacterium acnes J165] Length = 165 Score = 160 bits (406), Expect = 2e-37, Method: Composition-based stats. Identities = 47/153 (30%), Positives = 86/153 (56%), Gaps = 9/153 (5%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNP--APGK-VILDATFGAGGYSRSFCKMGSN--VIA 63 M++ + H+PV+ +++ LL G+ V +D T G GG++ + + + ++ Sbjct: 1 MATDAIGSDAVHIPVMRARILDLLAVVLKSGRRVHVDGTLGMGGHAEAVLRRFPDVELVG 60 Query: 64 LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDC 120 +DRD A++ + + + ++ L A +L + + D G VD V+ DLG+SS QID Sbjct: 61 IDRDQQALTMAEARLEPFADRVHLVHAVHDELPEVLDDLGLDYVDSVLLDLGLSSFQIDE 120 Query: 121 GDRGFSFQKSGPLDMRMSC-SGISASDVVNQAN 152 +RGFS+ PLDMRM SG +A+ ++N+++ Sbjct: 121 VERGFSYSVDSPLDMRMDQSSGRTAAQILNESD 153 >gi|154337952|ref|XP_001565202.1| S-adenosyl-methyltransferase mraW-like protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 491 Score = 159 bits (404), Expect = 4e-37, Method: Composition-based stats. Identities = 69/314 (21%), Positives = 132/314 (42%), Gaps = 46/314 (14%) Query: 28 VIALLNPAPGK----VI--LDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETM 78 V+ L + LD TFG+G ++ + G + V+A+D D A ++ Sbjct: 128 VLDALVLREKQKRLVTYDVLDCTFGSGFHTGVVLENGRPYTRVVAMDCDVAATVSARKIA 187 Query: 79 RDYK-EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF--QKSGPLDM 135 ++ ++F + S+ + ++ D V+ D G S Q++ +RGF + LDM Sbjct: 188 DEFGAKRFRFYARPMSEAKAMFGERSFDAVMIDPGPSFTQLENPERGFLLGDESDHALDM 247 Query: 136 RMSC-SGISASDVVNQANVKDLTRIL--GILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192 R + A + +N L+ L L +Q+ ++A AI +RR PF + Sbjct: 248 RYGLMYKLGALEYLNTVPQHALSGALASYELLTPQQSMKLARAIRQRR---PFGGAHRVL 304 Query: 193 SLIQKT--------VYFSKNNRIHPATRSF-QALRIFVNNEIEELAQGLRSAEKALKAGG 243 ++++ + R + +F +LR VN+E +EL++ L++A L+A G Sbjct: 305 EVVEEAGNELPEEGWMSQGSRRKTSMSWNFITSLRCIVNHERQELSEPLQNALLLLRADG 364 Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303 L+V S E++L+ + +++ +IP ++V + Sbjct: 365 RLVVFSRLLWEEKLISATISQHPHALLSYSEVIPI-------------------DEVQEH 405 Query: 304 RRSRSAKLRAGMRT 317 SR K+ RT Sbjct: 406 GHSRHTKMWIVTRT 419 >gi|260889238|ref|ZP_05900501.1| MraW methylase family protein [Leptotrichia hofstadii F0254] gi|260860649|gb|EEX75149.1| MraW methylase family protein [Leptotrichia hofstadii F0254] Length = 129 Score = 159 bits (403), Expect = 5e-37, Method: Composition-based stats. Identities = 48/130 (36%), Positives = 77/130 (59%), Gaps = 3/130 (2%) Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 +L+ ++ K++ K+ + HPA R+FQA+RIFVN E+E L++ L A K L G L+V++ Sbjct: 2 ELADIVIKSI--GKSMKRHPAKRTFQAIRIFVNKELEVLSETLDKAVKLLNKNGRLLVIT 59 Query: 250 FHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 FHSLEDR+VK+ F + I ++ + ITKK ++ + ++ N R+ S Sbjct: 60 FHSLEDRIVKEKFREYEDPCTCPKDIPICVCNKKSLGKIITKKPIIAKKIELEENNRAHS 119 Query: 309 AKLRAGMRTV 318 AKLR R+ Sbjct: 120 AKLRIFERSE 129 >gi|21410962|gb|AAH30997.1| METT5D1 protein [Homo sapiens] Length = 212 Score = 159 bits (403), Expect = 5e-37, Method: Composition-based stats. Identities = 51/131 (38%), Positives = 78/131 (59%), Gaps = 7/131 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H+PV++++V+ L+P G++ LD TFG+GG++++ + S+ + ALDRDP A + + Sbjct: 5 HIPVMVDEVVHCLSPQKGQIFLDMTFGSGGHTKAILQKESDIVLYALDRDPTAYALAEHL 64 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 Y +Q FSQ + + GV DGV+ DLG SSMQ+D +RGFS +K G Sbjct: 65 SELYPKQIRAMLGQFSQAEALLMKAGVQPGTFDGVLMDLGCSSMQLDTPERGFSLRKDGS 124 Query: 133 LDMRMSCSGIS 143 LDMRM + Sbjct: 125 LDMRMDGGRST 135 >gi|153844085|ref|ZP_01993621.1| MraW methylase family [Vibrio parahaemolyticus AQ3810] gi|149745262|gb|EDM56513.1| MraW methylase family [Vibrio parahaemolyticus AQ3810] Length = 148 Score = 159 bits (402), Expect = 6e-37, Method: Composition-based stats. Identities = 49/140 (35%), Positives = 75/140 (53%), Gaps = 4/140 (2%) Query: 181 QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 ++ P T L+ LI + S + HPATR+FQA RI++N+E+EE+ L+ A + L Sbjct: 8 ENEPMVRTGQLAKLISEAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAARILA 67 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT----KKVVVPT 296 G L V+SFHSLEDR+VK+F S + + A S K + P+ Sbjct: 68 PEGRLSVISFHSLEDRMVKRFIRKESKGPEVPHGIPLTEAQIKELGSANMKTVGKAIKPS 127 Query: 297 QEDVAFNRRSRSAKLRAGMR 316 ++++ N RSRS+ LR + Sbjct: 128 KQEIDMNPRSRSSVLRIAEK 147 >gi|198413504|ref|XP_002123312.1| PREDICTED: similar to methyltransferase 5 domain containing 1, partial [Ciona intestinalis] Length = 190 Score = 158 bits (401), Expect = 1e-36, Method: Composition-based stats. Identities = 61/186 (32%), Positives = 103/186 (55%), Gaps = 15/186 (8%) Query: 142 ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYF 201 I+A+DVVN + ++LT I+ G+E+ A I+ +I++ R P TT +L+ ++ Sbjct: 5 ITAADVVNNLDEEELTEIIYKYGDERNARNISSSIIENR---PISTTLELARVVSMAFSQ 61 Query: 202 SKN--------NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253 + + R H AT++F A+RIFVN+E+ E+ G++++EK L GG + V++FHSL Sbjct: 62 TSDVFRVDSLGRRCHIATKTFMAIRIFVNDELNEICHGIKTSEKYLMNGGKMGVITFHSL 121 Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKK---VVVPTQEDVAFNRRSRSAK 310 EDR+VK+ + + K+ +++P+ E++ N RSRSAK Sbjct: 122 EDRVVKRMLKQIEIS-KPFNVKMGVGKRSKTERRYWKREQSLLLPSGEEIEQNPRSRSAK 180 Query: 311 LRAGMR 316 LR R Sbjct: 181 LRIATR 186 >gi|205830884|sp|P0C7V9|ME15P_HUMAN RecName: Full=Putative methyltransferase-like protein 15P1; AltName: Full=Methyltransferase 5 domain-containing protein 2; AltName: Full=Methyltransferase-like protein 15 pseudogene 1 gi|119599129|gb|EAW78723.1| hCG2022166, isoform CRA_a [Homo sapiens] Length = 234 Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats. Identities = 54/157 (34%), Positives = 86/157 (54%), Gaps = 9/157 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 H+PV++++V+ L+P G++ LD TFG+GG++++ + S+ + ALDRDP A + + Sbjct: 72 HIPVMVDEVVHCLSPQKGQIFLDMTFGSGGHTKAILQKESDIVLYALDRDPTAYALAEHL 131 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 Y +Q FSQ + + GV DGV+ DLG SSMQ+D +RG S +K GP Sbjct: 132 SELYPKQIRAMLGQFSQAEALLMKAGVQPGTFDGVLMDLGCSSMQLDTPERGSSLRKDGP 191 Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQA 169 LD+RM G + S + LT + + + Sbjct: 192 LDIRMD-GGRNISSLCYLYTE-RLTTAIYLYCHQDFP 226 >gi|148228894|ref|NP_001085383.1| methyltransferase like 15 [Xenopus laevis] gi|49258062|gb|AAH71163.1| MGC84490 protein [Xenopus laevis] Length = 191 Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats. Identities = 58/126 (46%), Positives = 73/126 (57%), Gaps = 7/126 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77 HVPV++ +VI L P G+ ILD TFGAGG++ S + SN ++ALDRDP A + Q+ Sbjct: 45 HVPVMVNEVIECLAPQEGQTILDLTFGAGGHTTSILRQASNIKILALDRDPAAFAIAQQL 104 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 Y FS+ +D + GV DGV+ D G SSMQ D DRGFS K GP Sbjct: 105 AHGYGPNIQPLLGRFSEAEDLLKSAGVEPGSIDGVLLDAGCSSMQFDTPDRGFSLSKDGP 164 Query: 133 LDMRMS 138 LDMRM Sbjct: 165 LDMRMD 170 >gi|207109224|ref|ZP_03243386.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori HPKX_438_CA4C1] Length = 158 Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats. Identities = 50/159 (31%), Positives = 87/159 (54%), Gaps = 7/159 (4%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70 + H VLL++V+ P V++D T G GG+S++ + +I +D+D FA Sbjct: 1 MQEIENLHQSVLLQEVLQAFAPLEKGVLIDCTLGLGGHSKAILSQKPHLKLIGIDKDKFA 60 Query: 71 VSCGQETMRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSF 127 +E +++++ +++L F++ ++ + + GV+ DLGVSS+Q+D +RGF+F Sbjct: 61 QEIAKERLKEFEGRYNLLSGGFAKRFKEALETHNKEIKGVLVDLGVSSLQLDDDNRGFNF 120 Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGE 165 S LDMRM S ++A V+N V L +I GE Sbjct: 121 -HSHALDMRMDLESELNAQKVINSYPVIALEKIFKDYGE 158 >gi|198431217|ref|XP_002121381.1| PREDICTED: similar to MGC84490 protein [Ciona intestinalis] Length = 226 Score = 156 bits (394), Expect = 6e-36, Method: Composition-based stats. Identities = 55/165 (33%), Positives = 79/165 (47%), Gaps = 18/165 (10%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRD 67 S H+PV+ E++++ LN G VI+D TFGAGG+++ + VIALDRD Sbjct: 26 SRPNSKETALHIPVMAEELVSGLNIKRGDVIIDMTFGAGGHTKFIMENYKHCKVIALDRD 85 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGD 122 A Q+ + +K + FS+L + D G+ + V+ D G SSMQ D + Sbjct: 86 EKAFEIAQDLSKKFKGRIIPLLGKFSELDKLLSDHGIVENSLNAVLLDAGCSSMQFDQPE 145 Query: 123 RGFSFQKSGPLDMRMS-----------CSGISASDVVNQANVKDL 156 RGFS + GPLDMRM +G+S N L Sbjct: 146 RGFSLVRDGPLDMRMDGNRWDVLFNFSMNGLSGGWWFNNCFRAQL 190 >gi|72025930|ref|XP_795360.1| PREDICTED: similar to methyltransferase 5 domain containing 1 [Strongylocentrotus purpuratus] gi|115727007|ref|XP_001191279.1| PREDICTED: similar to methyltransferase 5 domain containing 1 [Strongylocentrotus purpuratus] Length = 187 Score = 149 bits (377), Expect = 5e-34, Method: Composition-based stats. Identities = 47/126 (37%), Positives = 71/126 (56%), Gaps = 5/126 (3%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQET 77 H PV++E+V++ P +V +D TFG GG++++ K V LDRDPFA Q+ Sbjct: 61 HKPVMVEEVLSFFAPQANQVYIDMTFGGGGHTQALMKCAPGITVYGLDRDPFAHQIAQKL 120 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 +K Q FS+++D + + VDG++ D G SS Q D +RGF+ + GPLD Sbjct: 121 SLHHKGQLCPLLGKFSEVKDLLSQREVSMVDGILIDAGCSSFQFDSPERGFALSQDGPLD 180 Query: 135 MRMSCS 140 MRM + Sbjct: 181 MRMDAN 186 >gi|70927460|ref|XP_736113.1| hypothetical protein [Plasmodium chabaudi chabaudi] gi|56510372|emb|CAH87288.1| hypothetical protein PC302411.00.0 [Plasmodium chabaudi chabaudi] Length = 243 Score = 149 bits (376), Expect = 6e-34, Method: Composition-based stats. Identities = 64/249 (25%), Positives = 110/249 (44%), Gaps = 51/249 (20%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76 DH P+LL + ++DAT G GG++ K + + I++D+D A+ + Sbjct: 4 DH-PILLH--------NQNEYMIDATLGGGGHTLEILKKFTKLKVISIDKDIEAIYYNKY 54 Query: 77 TMRDYKE--QFSLFQATFSQLQDYVPDKGV------DGVVFDLGVSSMQIDCGDRGFSFQ 128 ++ Y + + L + + + + ++ DLGVS+ Q+ RGFS++ Sbjct: 55 KLKSYIDTNRLKLIHGNYKDILFLLNYHSLPLFNSYSAILVDLGVSTHQLKSSKRGFSYK 114 Query: 129 KSGPLDMRMSC-------------------------------SGISASDVVNQANVKDLT 157 + LDM M+ G +++N N+K L Sbjct: 115 YNNILDMNMNKYTEKEYVENYINKELKQDNEIKELYMTSEIEDGKKIHNILNTYNLKKLK 174 Query: 158 RILGILGEEKQASRIAHAIVKRR-QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQA 216 I+ GEEK+A +IA I++ R Q+ TT DL ++I T + + +R FQA Sbjct: 175 YIIQKFGEEKKAFKIAKKIIEWRKQNKEIVTTFDLKNIILSTCKNNYKSNNKVLSRVFQA 234 Query: 217 LRIFVNNEI 225 RI+VNNE+ Sbjct: 235 FRIYVNNEL 243 >gi|71412140|ref|XP_808269.1| S-adenosyl-methyltransferase mraW-like protein [Trypanosoma cruzi strain CL Brener] gi|70872439|gb|EAN86418.1| S-adenosyl-methyltransferase mraW-like protein, putative [Trypanosoma cruzi] Length = 464 Score = 148 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 68/300 (22%), Positives = 122/300 (40%), Gaps = 40/300 (13%) Query: 40 ILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQL 95 +LD T G G ++ + + G V+ALD D + E + ++ ++F F S+ Sbjct: 120 VLDCTLGGGYHAGAVLENGGPYTRVVALDCDHDVMQTAMELVDEFGADRFKFFCRQMSEA 179 Query: 96 QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP--LDMRMSCS-GISASDVVNQAN 152 + ++ D V+ D G S Q++ +RGF LDMR GI A +N Sbjct: 180 KSLFGERSFDAVMIDPGPSETQLENPERGFLLDDENSHHLDMRYGPQLGIGALAYLNTVP 239 Query: 153 VKDLTRILGILG--EEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSK------- 203 L+ L G +Q+ ++A + RR PF +++D+ ++ Sbjct: 240 QHALSGALSAYGLLTPEQSMKMAREVRCRR---PFTSSRDVIGCVEAAGDMLPEEVWSTQ 296 Query: 204 --NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKF 261 + + + F +LR +NNE+ EL + L +A L+ G L+V S E+RL++ Sbjct: 297 SSRRKTPMSWKFFTSLRCILNNEMYELREALENALLLLRDDGRLVVFSRLMWEERLIQST 356 Query: 262 FASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERS 321 S ++ +P E+V + +R K+ R + S Sbjct: 357 VESHPHALLCYTEDVPM-------------------EEVCEHGFTRHTKMWVASRVAKSS 397 >gi|71424845|ref|XP_812929.1| S-adenosyl-methyltransferase mraW-like protein [Trypanosoma cruzi strain CL Brener] gi|70877764|gb|EAN91078.1| S-adenosyl-methyltransferase mraW-like protein, putative [Trypanosoma cruzi] Length = 464 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 67/300 (22%), Positives = 121/300 (40%), Gaps = 40/300 (13%) Query: 40 ILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQL 95 +LD T G G ++ + + G V+ALD D + E + ++ ++F F S+ Sbjct: 120 VLDCTLGGGYHAGAVLENGGPYTRVVALDCDHDVMQTAMELVDEFGADRFKFFCRQMSEA 179 Query: 96 QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP--LDMRMSCS-GISASDVVNQAN 152 + ++ D V+ D G S Q++ +RGF LDMR GI A +N Sbjct: 180 KSLFGERSFDAVMIDPGPSETQLENPERGFLLDDENSHHLDMRYGPQLGIGALAYLNTVP 239 Query: 153 VKDLTRILGILG--EEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSK------- 203 L+ L +Q+ ++A + +RR PF +++D+ ++ Sbjct: 240 QHALSGALSAYALLTPEQSMKMAREVRRRR---PFTSSRDVIGCVEAAGDMLPEEVWSTQ 296 Query: 204 --NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKF 261 + + + F +LR +NNE+ EL + L +A L+ G L+V S E+RL++ Sbjct: 297 SSRRKTPMSWKFFTSLRCILNNEMYELREALENALLLLRDDGRLVVFSRLVWEERLIQST 356 Query: 262 FASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERS 321 S ++ +P E+V + +R K+ R S Sbjct: 357 VESHPHALLCYTEDVPM-------------------EEVCEHGFTRHTKMWVASRVANSS 397 >gi|322827176|gb|EFZ31465.1| S-adenosyl-methyltransferase mraW-like protein, putative [Trypanosoma cruzi] Length = 516 Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats. Identities = 68/300 (22%), Positives = 122/300 (40%), Gaps = 40/300 (13%) Query: 40 ILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQL 95 +LD T G G ++ + + G V+ALD D + E + ++ ++F F S+ Sbjct: 172 VLDCTLGGGYHAGAVLENGGPYTRVVALDCDHDVMQTAMELVDEFGADRFKFFCRQMSEA 231 Query: 96 QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP--LDMRMSCS-GISASDVVNQAN 152 + ++ D V+ D G S Q++ +RGF LDMR GI A +N Sbjct: 232 KSLFGERSFDAVMIDPGPSETQLENPERGFLLDDENSHHLDMRYGSQLGIGALAYLNTVP 291 Query: 153 VKDLTRILGILG--EEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSK------- 203 L+ L G +Q+ ++A + RR PF +++D+ ++ Sbjct: 292 QHALSGALSAYGLLTPEQSMKMAREVRCRR---PFTSSRDVIGCVEAAGDMLPEEVWSTQ 348 Query: 204 --NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKF 261 + + + F +LR +NNE+ EL + L +A L+ G L+V S E+RL++ Sbjct: 349 SSRRKTPMSWKFFTSLRCILNNEMYELREALENALLLLRDDGRLVVFSRLMWEERLIQST 408 Query: 262 FASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERS 321 S ++ +P E+V + +R K+ R + S Sbjct: 409 VESHPHALLCYTEDVPM-------------------EEVCEHGFTRHTKMWVASRVAKSS 449 >gi|307069557|ref|YP_003878034.1| S-adenosyl-methyltransferase MraW [Candidatus Zinderia insecticola CARI] gi|306482817|gb|ADM89688.1| S-adenosyl-methyltransferase MraW [Candidatus Zinderia insecticola CARI] Length = 285 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 67/308 (21%), Positives = 138/308 (44%), Gaps = 34/308 (11%) Query: 17 IGDHVPVLLEKVIALL-NPAPGK-VILDATFGAGGY--SRSFCKMGSNVIALDRDPFAVS 72 I + P+L+ ++ +L N K + +DAT G + + ++A ++D + Sbjct: 3 INNKFPILISEIFNILKNIKINKDIFIDATMGMAKHLKKINKKIEIKKILAFEKD----N 58 Query: 73 CGQETMRDYKEQFSLFQATFSQL---QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 + ++ + F + + K ++ ++FDLG+S QI GFS++K Sbjct: 59 LIFNRNKIKMKKIFIVNDNFKNIFKILKLLKIKKINFILFDLGISLFQI-INKNGFSYKK 117 Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 + LDMR++ A ++N + + +I +K +I + I+ R+ + T Sbjct: 118 NSLLDMRINNKLNKPAYKILNNYKKEKILKIFNYYRNKKYFFKIVNLIIYNRKKKEIKKT 177 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 DL ++I+K +KN + ++ FQ +R ++N + L L++ G++I++ Sbjct: 178 FDLINIIKKVT--NKNKINNYISKIFQIIRNYINK--DNLKNILKNIILKYLYKGIIIII 233 Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308 SFHS+ED ++K F K I +P + ++ N +SRS Sbjct: 234 SFHSIEDNIIKNMFYKNKFKKKIKLLKI-----------------IPQKLEIFLNYKSRS 276 Query: 309 AKLRAGMR 316 + +R ++ Sbjct: 277 SIMRIILK 284 >gi|221502434|gb|EEE28161.1| S-adenosyl-methyltransferase mraw, putative [Toxoplasma gondii VEG] Length = 1189 Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 57/167 (34%), Positives = 83/167 (49%), Gaps = 11/167 (6%) Query: 104 VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGIL 163 +DGV SS ++ G + G LD A+ VVN L I Sbjct: 896 IDGVAAANDSSSHGLENAPSGIGGSRGGNLD---------AAQVVNSLPQAALAYIFKTF 946 Query: 164 GEEKQASRIAHAIVKRRQSAPF-QTTQDLSSLIQKTVYFSKNNR-IHPATRSFQALRIFV 221 GEE+ A IA IV+ R+ +TT++L +I+ + I +R FQALR++V Sbjct: 947 GEERLAGPIASCIVRYREIHGLLKTTEELRQIIEDCCRYRNPQFVIKTCSRVFQALRMYV 1006 Query: 222 NNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGK 268 N E+E L L AE+ LK GG L+++S+HSLEDRL+K+ + Sbjct: 1007 NQELESLDSLLTHAERLLKPGGRLVILSYHSLEDRLIKQRLKQNNKN 1053 Score = 86.4 bits (213), Expect = 5e-15, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 4/71 (5%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAV 71 + +HVPV++ +V+ L + + +D T G GG++ + + G ++A+DRD AV Sbjct: 545 SYHEHVPVMVNEVLQYLITSKDGLYIDCTAGGGGHAEAIWRAVEFEGGRLLAIDRDEEAV 604 Query: 72 SCGQETMRDYK 82 + + MR + Sbjct: 605 AATRNRMRQLR 615 Score = 57.1 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 19/37 (51%), Positives = 23/37 (62%) Query: 101 DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 + VDG+ DLGVS+ Q+ RGFS GPLDMR Sbjct: 815 EGTVDGIFADLGVSTHQLTAAHRGFSHSIDGPLDMRF 851 Score = 54.0 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 23/39 (58%) Query: 278 SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 + ++ + KK + P +E+V NRR+R+AK+R + Sbjct: 1141 NERENKLWHLVLKKPLKPKEEEVLRNRRARTAKMRVAAK 1179 >gi|221482188|gb|EEE20549.1| S-adenosyl-methyltransferase mraw, putative [Toxoplasma gondii GT1] Length = 1191 Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 57/167 (34%), Positives = 83/167 (49%), Gaps = 11/167 (6%) Query: 104 VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGIL 163 +DGV SS ++ G + G LD A+ VVN L I Sbjct: 896 IDGVAAANDSSSHGLENAPSGIGGSRGGNLD---------AAQVVNSLPQAALAYIFKTF 946 Query: 164 GEEKQASRIAHAIVKRRQSAPF-QTTQDLSSLIQKTVYFSKNNR-IHPATRSFQALRIFV 221 GEE+ A IA IV+ R+ +TT++L +I+ + I +R FQALR++V Sbjct: 947 GEERLAGPIASCIVRYREIHGLLKTTEELRQIIEDCCRYRNPQFVIKTCSRVFQALRMYV 1006 Query: 222 NNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGK 268 N E+E L L AE+ LK GG L+++S+HSLEDRL+K+ + Sbjct: 1007 NQELESLDSLLTHAERLLKPGGRLVILSYHSLEDRLIKQRLKQNNKN 1053 Score = 86.4 bits (213), Expect = 5e-15, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 4/71 (5%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAV 71 + +HVPV++ +V+ L + + +D T G GG++ + + G ++A+DRD AV Sbjct: 545 SYHEHVPVMVNEVLQYLITSKDGLYIDCTAGGGGHAEAIWRAVEFEGGRLLAIDRDEEAV 604 Query: 72 SCGQETMRDYK 82 + + MR + Sbjct: 605 AATRNRMRQLR 615 Score = 57.1 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 19/37 (51%), Positives = 23/37 (62%) Query: 101 DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 + VDG+ DLGVS+ Q+ RGFS GPLDMR Sbjct: 815 EGTVDGIFADLGVSTHQLTAAHRGFSHSIDGPLDMRF 851 >gi|237843145|ref|XP_002370870.1| S-adenosyl-methyltransferase mraW, putative [Toxoplasma gondii ME49] gi|211968534|gb|EEB03730.1| S-adenosyl-methyltransferase mraW, putative [Toxoplasma gondii ME49] Length = 1062 Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 57/167 (34%), Positives = 83/167 (49%), Gaps = 11/167 (6%) Query: 104 VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGIL 163 +DGV SS ++ G + G LD A+ VVN L I Sbjct: 769 IDGVAAANDSSSHGLENAPSGIGGSRGGNLD---------AAQVVNSLPQAALAYIFKTF 819 Query: 164 GEEKQASRIAHAIVKRRQSAPF-QTTQDLSSLIQKTVYFSKNNR-IHPATRSFQALRIFV 221 GEE+ A IA IV+ R+ +TT++L +I+ + I +R FQALR++V Sbjct: 820 GEERLAGPIASCIVRYREIHGLLKTTEELRQIIEDCCRYRNPQFVIKTCSRVFQALRMYV 879 Query: 222 NNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGK 268 N E+E L L AE+ LK GG L+++S+HSLEDRL+K+ + Sbjct: 880 NQELESLDSLLTHAERLLKPGGRLLILSYHSLEDRLIKQRLKQNNKN 926 Score = 87.5 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 4/71 (5%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAV 71 + +HVPV++ +V+ L + + +D T G GG++ + + G ++A+DRD AV Sbjct: 418 SYHEHVPVMVNEVLQYLITSKDGLYIDCTAGGGGHAEAIWRAVEFEGGRLLAIDRDEEAV 477 Query: 72 SCGQETMRDYK 82 + + MR + Sbjct: 478 AATRNRMRQLR 488 Score = 57.9 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 19/37 (51%), Positives = 23/37 (62%) Query: 101 DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 + VDG+ DLGVS+ Q+ RGFS GPLDMR Sbjct: 688 EGTVDGIFADLGVSTHQLTAAHRGFSHSIDGPLDMRF 724 Score = 54.8 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 23/39 (58%) Query: 278 SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 + ++ + KK + P +E+V NRR+R+AK+R + Sbjct: 1014 NERENKLWHLVLKKPLKPKEEEVLRNRRARTAKMRVAAK 1052 >gi|330981225|gb|EGH79328.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 122 Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 46/118 (38%), Positives = 65/118 (55%), Gaps = 2/118 (1%) Query: 201 FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKK 260 + +PATR+FQ LRI VNNE+ +L GL +A AL+ GG L+V+SFHSLEDR+VK Sbjct: 3 PAWEKGKNPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLVVISFHSLEDRIVKL 62 Query: 261 FFASRS-GKVMAVRHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 F + G+ + +P P + I K + + N RSRSA +R + Sbjct: 63 FMRKLAKGEADNMPRNLPIQYKPFEPKIKIHGKAQFASDVETKANPRSRSAVMRVAEK 120 >gi|258539487|ref|YP_003173986.1| methyltransferase [Lactobacillus rhamnosus Lc 705] gi|257151163|emb|CAR90135.1| Methyltransferase [Lactobacillus rhamnosus Lc 705] Length = 115 Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats. Identities = 41/112 (36%), Positives = 61/112 (54%), Gaps = 3/112 (2%) Query: 210 ATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRS--G 267 + FQA+RI VN+E+ L L A K + GG + V++F SLEDRLVK F S Sbjct: 5 LKKVFQAIRIAVNDELSALEASLEQALKLINVGGRISVITFQSLEDRLVKTMFKEVSTVQ 64 Query: 268 KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319 V ++P A P +Q + +K ++P+ ++A N R+ SAKLR + Sbjct: 65 DVPRGLPVVPEAAQPH-YQLVNRKPILPSAAELAENHRAHSAKLRVIEKIRN 115 >gi|156329544|ref|XP_001619047.1| hypothetical protein NEMVEDRAFT_v1g152542 [Nematostella vectensis] gi|156201404|gb|EDO26947.1| predicted protein [Nematostella vectensis] Length = 150 Score = 139 bits (352), Expect = 4e-31, Method: Composition-based stats. Identities = 58/150 (38%), Positives = 78/150 (52%), Gaps = 17/150 (11%) Query: 40 ILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQ--ETMRDYKEQFSLFQATFSQLQ 96 +DATFGAGG++ + V A+DRDP AV Q T +YK Q Q FS L Sbjct: 1 FVDATFGAGGHTCAILNSAKCKVFAVDRDPVAVEIAQVLSTRPEYKGQLIPLQGKFSDLF 60 Query: 97 DYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC---------SGI 142 + + + G+ DG++ D+G SSMQ D RGFS K GPLDMRM S Sbjct: 61 ELLSNNGIKKESLDGMLLDIGPSSMQFDDPLRGFSLSKDGPLDMRMDSENDTKSSRNSSF 120 Query: 143 SASDVVNQANVKDLTRILGILGEEKQASRI 172 +A+DVVN + ++L +L G E+ A Sbjct: 121 TAADVVNSISERELISVLRHYGGERDAGMY 150 >gi|2738256|gb|AAB94406.1| putative ipaD homolog [Rickettsia typhi str. Wilmington] Length = 124 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 48/123 (39%), Positives = 75/123 (60%), Gaps = 1/123 (0%) Query: 89 QATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVV 148 ++ F+ + + DG+V DLGVSSMQ+D RGFSF GPLDMRMS G SA + V Sbjct: 3 KSNFADSFGKLKQQKFDGIVMDLGVSSMQLDIAGRGFSFLYDGPLDMRMSAQGFSAEEFV 62 Query: 149 NQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIH 208 N A+ ++++ ++ G E + RIA I+K R+ A +T+ L+ +++ ++ F K +I Sbjct: 63 NTADEQEISDVIYKYGNESLSRRIAKNIIKYRKIARIDSTRKLAEIVRYSIGFRK-GKIA 121 Query: 209 PAT 211 AT Sbjct: 122 FAT 124 >gi|33322183|gb|AAQ06812.1|AF496152_1 hypothetical protein [Lactobacillus delbrueckii subsp. lactis] Length = 119 Score = 136 bits (343), Expect = 5e-30, Method: Composition-based stats. Identities = 42/108 (38%), Positives = 65/108 (60%), Gaps = 1/108 (0%) Query: 99 VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLT 157 + G+DG+ +DLGVSS Q+D +RGFS++ LDMRM S A +VNQ + K L Sbjct: 11 LGISGIDGIYYDLGVSSPQLDQAERGFSYRFDARLDMRMDQSQDFDAYQLVNQYDQKQLA 70 Query: 158 RILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNN 205 +L G+EK + +IA IV+RR+ P +TT +L +I++ + + Sbjct: 71 DVLYRYGDEKFSRQIARKIVERRRVKPIETTFELVEIIKEAIPAAARR 118 >gi|225389940|ref|ZP_03759664.1| hypothetical protein CLOSTASPAR_03690 [Clostridium asparagiforme DSM 15981] gi|225043994|gb|EEG54240.1| hypothetical protein CLOSTASPAR_03690 [Clostridium asparagiforme DSM 15981] Length = 111 Score = 135 bits (341), Expect = 9e-30, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 54/111 (48%), Gaps = 5/111 (4%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFA 70 + H VLL + + LN PG +D T G GG++ K +I +D+D A Sbjct: 1 MEELKFGHTSVLLYETVGSLNIIPGGCYVDGTLGGGGHALEVLKRLGHGRLIGIDQDEDA 60 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQI 118 + + ++ + ++ ++ + + ++ + + VDG+ DLGVSS Q+ Sbjct: 61 IRAAGQRLKAFADKVTIVRDNYRNIRSVLEQLSVEKVDGIYLDLGVSSYQL 111 >gi|261885262|ref|ZP_06009301.1| S-adenosyl-methyltransferase MraW [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 111 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 31/105 (29%), Positives = 56/105 (53%), Gaps = 2/105 (1%) Query: 212 RSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMA 271 +FQA+RI VN E++EL L + + +L ++SFHSLED++ K F + Sbjct: 1 MAFQAIRIEVNKELDELNNLLNLIKSSKINNAILDIISFHSLEDKIAKSTFKEWEKSCIC 60 Query: 272 VRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314 + + ++ + +TKK + P+++++ N RS AK+R Sbjct: 61 DNFVMKCECGNNHSIGKILTKKPITPSEDEIKQNPRSSCAKMRIF 105 >gi|115691196|ref|XP_001203985.1| PREDICTED: similar to methyltransferase 5 domain containing 1, partial [Strongylocentrotus purpuratus] gi|115735657|ref|XP_001187798.1| PREDICTED: similar to methyltransferase 5 domain containing 1, partial [Strongylocentrotus purpuratus] Length = 140 Score = 122 bits (308), Expect = 6e-26, Method: Composition-based stats. Identities = 42/117 (35%), Positives = 65/117 (55%), Gaps = 5/117 (4%) Query: 205 NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFA- 263 H AT++FQALRIFVNNE+ ELA + +A ++ GG L V++FHSLEDR+VK+ Sbjct: 23 RHAHTATKTFQALRIFVNNELNELAVAVEAAWDLMRPGGKLAVLTFHSLEDRVVKRSLQG 82 Query: 264 ----SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 R + R + ++ + + + E++ N R+RSAKLR ++ Sbjct: 83 RHVAERGTSLRQKRVESHKDNGAQKWEVVKRNELCADDEEINMNPRARSAKLRTAIK 139 >gi|299143951|ref|ZP_07037031.1| S-adenosyl-methyltransferase MraW [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518436|gb|EFI42175.1| S-adenosyl-methyltransferase MraW [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 83 Score = 122 bits (307), Expect = 8e-26, Method: Composition-based stats. Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 1/82 (1%) Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVV 294 L GG + V+SFHSLEDR+VK+ F + + + + + IT+K +V Sbjct: 1 MDRLNPGGRIAVISFHSLEDRIVKETFKYYYLDCICPEKAPVCNCGKKREIEIITRKPIV 60 Query: 295 PTQEDVAFNRRSRSAKLRAGMR 316 +++++ N R+ SAKLR + Sbjct: 61 ASEKELIENNRAHSAKLRVAEK 82 >gi|295099855|emb|CBK88944.1| Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Eubacterium cylindroides T2-87] Length = 107 Score = 122 bits (306), Expect = 9e-26, Method: Composition-based stats. Identities = 32/100 (32%), Positives = 53/100 (53%) Query: 219 IFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPS 278 + VN E+ +L L+ K LK G + V++FHSLEDR+VKK F + + + Sbjct: 1 MEVNQELPQLEVVLKEGLKRLKPHGRMCVITFHSLEDRIVKKIFKEVAVPKKVDKRLPSL 60 Query: 279 NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318 +Q + +K V+ +++++ N R+ SAKLR R Sbjct: 61 GIENLEYQLVNRKPVLASKQELDTNYRAHSAKLRGIERNE 100 >gi|317473099|ref|ZP_07932398.1| S-adenosyl-methyltransferase MraW [Anaerostipes sp. 3_2_56FAA] gi|316899437|gb|EFV21452.1| S-adenosyl-methyltransferase MraW [Anaerostipes sp. 3_2_56FAA] Length = 115 Score = 119 bits (299), Expect = 6e-25, Method: Composition-based stats. Identities = 40/115 (34%), Positives = 55/115 (47%), Gaps = 14/115 (12%) Query: 202 SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKF 261 K R+FQALRI VN+E E L + L L GG +++FHS EDRLVKK Sbjct: 14 KKEAVKKTCQRTFQALRIDVNSEFEVLYEFLEKLPNVLAKGGRAAILTFHSGEDRLVKKS 73 Query: 262 FASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 F V+Q I+ V+ P+ E+ N R+RS K+R ++ Sbjct: 74 FKRL--------------LREGVYQEISTDVIRPSAEECRMNSRARSTKMRWAIK 114 >gi|68065600|ref|XP_674783.1| hypothetical protein [Plasmodium berghei strain ANKA] gi|56493579|emb|CAH96215.1| conserved hypothetical protein [Plasmodium berghei] Length = 220 Score = 119 bits (298), Expect = 9e-25, Method: Composition-based stats. Identities = 63/236 (26%), Positives = 106/236 (44%), Gaps = 57/236 (24%) Query: 123 RGFSFQKSGPLDMRMSC----------------------------------------SGI 142 RGFS++ + LDM M+ Sbjct: 1 RGFSYKYNDILDMNMNKYTEKEYIKDHINKELKQDSKIKELYMTSESHDNNIYHKNYDSK 60 Query: 143 SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQTTQDLSSLIQKTVYF 201 D++N N+K L I+ GEEK+A +IA I++ R+ TT DL ++I T Sbjct: 61 KIHDILNTYNLKKLKYIIQKFGEEKKAFKIAKKIIEWRKKNGEIITTFDLKNIILSTCKN 120 Query: 202 SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKF 261 + + +R FQ+ RI++N+E+ L L S+ K LK GG+LIV+S+HSLE++ + F Sbjct: 121 NYKSNNKVLSRVFQSFRIYINSELLSLKNLLLSSHKILKQGGVLIVISYHSLENKYIDLF 180 Query: 262 FASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 +++ ++ I + +VPT +++ N+ SRSAK+ + Sbjct: 181 VKNKTK----------------LWNQINIQPIVPTDQEIKLNKSSRSAKMFVFKKI 220 >gi|163784407|ref|ZP_02179294.1| hypothetical protein HG1285_12402 [Hydrogenivirga sp. 128-5-R1-1] gi|159880321|gb|EDP73938.1| hypothetical protein HG1285_12402 [Hydrogenivirga sp. 128-5-R1-1] Length = 115 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 38/114 (33%), Positives = 63/114 (55%), Gaps = 8/114 (7%) Query: 19 DHVPVLLEKVIALLN-PAPGKVIL-DATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCG 74 +H PVL ++V+ GK + DAT G GG+S K N +I LD+D +A+ Sbjct: 3 EHYPVLKDEVVKFFTLIESGKEYILDATVGGGGHSYLILKNFPNRKIIGLDKDDYALKRA 62 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGF 125 +E ++++K ++ L ++ F L + + +D GV+FD GVS Q+ +RGF Sbjct: 63 EEKLKEFKGRYILIKSAFKDLDKVLENLNIDKLAGVLFDFGVSHFQLKL-ERGF 115 >gi|325119263|emb|CBZ54817.1| putative S-adenosyl-methyltransferase mraW [Neospora caninum Liverpool] Length = 1044 Score = 112 bits (282), Expect = 6e-23, Method: Composition-based stats. Identities = 43/126 (34%), Positives = 67/126 (53%), Gaps = 5/126 (3%) Query: 141 GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA-PFQTTQDLSSLIQKTV 199 + A+ VVN L I + GEE A IA IV+ R++ + T++L +++ Sbjct: 779 ALDAAQVVNGLPQAALASIFKLYGEEPLAELIAACIVRHRETRGTLRATEELREIVEGCC 838 Query: 200 YFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258 + I +R FQ ++VN E+E L L AE+ LK GG L+++S+HSLEDRL+ Sbjct: 839 RYRNPQFIIKTCSRVFQ---MYVNQELEVLDLLLTHAERLLKPGGRLVILSYHSLEDRLI 895 Query: 259 KKFFAS 264 K+ Sbjct: 896 KQRLKR 901 Score = 89.9 bits (222), Expect = 5e-16, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCG 74 +HVPV++++V+ L A V +D T G GG+ + + G ++A+DRD AV Sbjct: 402 EHVPVMVQEVLQYLITAKDGVYVDCTAGGGGHVEAIWRAVASEGGRLLAIDRDEEAVEAT 461 Query: 75 QETMRDYKEQ 84 + +R + + Sbjct: 462 RNRLRQLQAR 471 Score = 36.7 bits (84), Expect = 5.0, Method: Composition-based stats. Identities = 9/17 (52%), Positives = 12/17 (70%) Query: 300 VAFNRRSRSAKLRAGMR 316 V NRR+RSAK+R + Sbjct: 1016 VLRNRRARSAKMRVAAK 1032 >gi|213861638|ref|ZP_03386108.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 88 Score = 112 bits (282), Expect = 6e-23, Method: Composition-based stats. Identities = 41/89 (46%), Positives = 60/89 (67%), Gaps = 1/89 (1%) Query: 167 KQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIE 226 + A RIA AIV+R + P T++L+ ++ K+ HPATR+FQA+RI+VN+E+E Sbjct: 1 RFAKRIARAIVERNREQPMTRTKELAEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELE 59 Query: 227 ELAQGLRSAEKALKAGGLLIVVSFHSLED 255 E+ Q L+S+ L GG L ++SFHSLED Sbjct: 60 EIEQALKSSLNVLAPGGRLSIISFHSLED 88 >gi|312867849|ref|ZP_07728054.1| S-adenosyl-methyltransferase MraW [Streptococcus parasanguinis F0405] gi|311096604|gb|EFQ54843.1| S-adenosyl-methyltransferase MraW [Streptococcus parasanguinis F0405] Length = 84 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 25/82 (30%), Positives = 40/82 (48%) Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295 L G + V++FHSLEDRL K+ F S + + + + +K ++P Sbjct: 1 MDLLAIDGRISVITFHSLEDRLTKQLFKEVSTVEVPKGLPFIPDDLKPKMELVNRKPILP 60 Query: 296 TQEDVAFNRRSRSAKLRAGMRT 317 + E++ N RS SAKLR + Sbjct: 61 SDEELEDNNRSHSAKLRVARKI 82 >gi|226328338|ref|ZP_03803856.1| hypothetical protein PROPEN_02232 [Proteus penneri ATCC 35198] gi|225203071|gb|EEG85425.1| hypothetical protein PROPEN_02232 [Proteus penneri ATCC 35198] Length = 89 Score = 109 bits (273), Expect = 6e-22, Method: Composition-based stats. Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 6/79 (7%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H VLL++ + LN P + +D TFG GG+SR +IA+DRDP A++ E Sbjct: 8 HTSVLLDEAVNGLNIKPSGIYIDGTFGRGGHSRLILSQLGEQGRLIAIDRDPQAIAVANE 67 Query: 77 TMRDYKEQFSLFQATFSQL 95 +FS+ F L Sbjct: 68 I---DDARFSIVHGPFQIL 83 >gi|56808162|ref|ZP_00365944.1| COG0275: Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Streptococcus pyogenes M49 591] Length = 95 Score = 109 bits (272), Expect = 9e-22, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 48/94 (51%) Query: 225 IEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV 284 + + ++ A + L G + V++FHSLEDRL K+ F S + + Sbjct: 1 MGAADEYIQDAMELLALDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPLIPEDMKPK 60 Query: 285 FQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318 F+ +++K ++P+ ++ N+R+ SAKLR + Sbjct: 61 FELVSRKPILPSHSELTANKRAHSAKLRVAKKIR 94 >gi|118594403|ref|ZP_01551750.1| S-adenosyl-methyltransferase MraW [Methylophilales bacterium HTCC2181] gi|118440181|gb|EAV46808.1| S-adenosyl-methyltransferase MraW [Methylophilales bacterium HTCC2181] Length = 98 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 6/92 (6%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69 + H+PVLL + I LN P LD TFG GG+S+ K ++A+D+D Sbjct: 1 MSKENFTHIPVLLNESIDGLNINPAGTYLDCTFGRGGHSKEILKRLNQNGRLVAIDQDLA 60 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD 101 AV+ G++ ++F ++ FS + + V Sbjct: 61 AVAEGKKI---NDKRFDIYHGKFSSMDEIVKK 89 >gi|145627902|ref|ZP_01783703.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae 22.1-21] gi|144979677|gb|EDJ89336.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae 22.1-21] Length = 82 Score = 106 bits (264), Expect = 7e-21, Method: Composition-based stats. Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 2/82 (2%) Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS--ITKKVVVP 295 L G L ++SFHSLEDR+VK F +S + + Q I K + P Sbjct: 1 MLAPEGRLSIISFHSLEDRMVKHFMKKQSKGEDIPKGLPLREDQIQRNQKLRIIGKAIQP 60 Query: 296 TQEDVAFNRRSRSAKLRAGMRT 317 + ++ N RSRSA LR R Sbjct: 61 SDAEIQANPRSRSAILRVAERI 82 >gi|167951237|ref|ZP_02538311.1| S-adenosyl-methyltransferase MraW [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 119 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 4/92 (4%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 I H PVLLE+ + LN + +D TFG GG+SR K+ +I +D+DP A+ Sbjct: 3 EITTHRPVLLEEAVTALNITAEGIYIDGTFGRGGHSRRILKVLGERGRLIGIDKDPQAIV 62 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKGV 104 G+E + +F++ Q +F+ + ++ V Sbjct: 63 HGREQLGG-DARFTIVQQSFAMIAQVGTERQV 93 >gi|258615770|ref|ZP_05713540.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium DO] Length = 82 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 5/80 (6%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72 H V+L++ + LN P V +D T G G+S ++ A D+D A+ Sbjct: 3 ETFQHYTVMLKETVDGLNIKPDGVYVDCTLGGAGHSEYLLSQLSSKGHLYAFDQDQKAID 62 Query: 73 CGQETMRDYKEQ--FSLFQA 90 + + Y EQ + +A Sbjct: 63 HAKLRLASYVEQGMVTFIKA 82 >gi|153864731|ref|ZP_01997531.1| Bacterial methyltransferase [Beggiatoa sp. SS] gi|152145773|gb|EDN72468.1| Bacterial methyltransferase [Beggiatoa sp. SS] Length = 95 Score = 102 bits (255), Expect = 7e-20, Method: Composition-based stats. Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 4/88 (4%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALD 65 MS +H PVLL +VI LN +D TFG GG++R+ + V+ALD Sbjct: 1 MSKPESLNASEHQPVLLSEVIHALNIHADGTYIDCTFGRGGHTRAILNHLEASGRVLALD 60 Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFS 93 DP AV + + ++ + + F+ Sbjct: 61 TDPQAVQ-AGQALSVSDDRLRIVHSAFA 87 >gi|159470611|ref|XP_001693450.1| predicted protein [Chlamydomonas reinhardtii] gi|158282953|gb|EDP08704.1| predicted protein [Chlamydomonas reinhardtii] Length = 74 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 34/80 (42%), Positives = 45/80 (56%), Gaps = 8/80 (10%) Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI--TKKVVVPT 296 L GG L V+SFHSLEDRLVK FA +G P + H + +K V+P+ Sbjct: 1 LAPGGRLAVISFHSLEDRLVKHAFARAAG------RPTPEDEHRTRVAVLVGNQKPVLPS 54 Query: 297 QEDVAFNRRSRSAKLRAGMR 316 +E+ A N R+RSAKLR + Sbjct: 55 EEETARNPRARSAKLRVLQK 74 >gi|33866827|ref|NP_898386.1| hypothetical protein SYNW2297 [Synechococcus sp. WH 8102] gi|33639428|emb|CAE08812.1| conserved hypothetical protein [Synechococcus sp. WH 8102] Length = 83 Score = 95.6 bits (237), Expect = 9e-18, Method: Composition-based stats. Identities = 35/96 (36%), Positives = 49/96 (51%), Gaps = 17/96 (17%) Query: 221 VNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA 280 +N+E+ L + L+ A L+ GGL+ ++SFHSLEDR VK F Sbjct: 1 MNDELGVLDRLLQQAPDWLEPGGLVGIISFHSLEDRRVKTAF-----------------L 43 Query: 281 HPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 + IT+K VV T+E+ N RSRSAK R + Sbjct: 44 RDERLERITRKPVVATEEEEEANPRSRSAKWRLARK 79 >gi|225159221|ref|ZP_03725523.1| S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis-like protein [Opitutaceae bacterium TAV2] gi|224802168|gb|EEG20438.1| S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis-like protein [Opitutaceae bacterium TAV2] Length = 125 Score = 94.5 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 3/90 (3%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSC 73 H+ VLL+ + LL P G LD TFG GG++R+ V+ALDRDP A+ Sbjct: 30 PAAGHISVLLQPTLELLAPRAGGRYLDCTFGGGGHTRALLNAAPDTRVVALDRDPAALPR 89 Query: 74 GQETMRDYK-EQFSLFQATFSQLQDYVPDK 102 +Y ++F L F +L + Sbjct: 90 AAALAAEYGSDRFQLIDRDFGRLAELAATH 119 >gi|330938026|gb|EGH41806.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv. pisi str. 1704B] Length = 76 Score = 94.1 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 4/71 (5%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76 H+ VLLE+ + L LD TFG GG+SR ++ D+DP A++ GQ Sbjct: 7 HITVLLEEAVEALAVRADGCYLDGTFGRGGHSRLILSQLGPDGRLLGFDKDPQAIATGQA 66 Query: 77 TMRDYKEQFSL 87 + +F L Sbjct: 67 LAAEAG-RFVL 76 >gi|218508136|ref|ZP_03506014.1| S-adenosyl-methyltransferase MraW [Rhizobium etli Brasil 5] Length = 71 Score = 92.2 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 34/53 (64%), Positives = 43/53 (81%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVS 72 H+PVLLE+V+A L PAPGK+ILD TFGAGGY+ + G+ VIALDRDP A++ Sbjct: 19 HIPVLLEEVLAALAPAPGKLILDGTFGAGGYTSAILAAGAEVIALDRDPTAIA 71 >gi|85057933|ref|YP_456849.1| hypothetical protein AYWB_653 [Aster yellows witches'-broom phytoplasma AYWB] gi|84790038|gb|ABC65770.1| conserved hypothetical protein [Aster yellows witches'-broom phytoplasma AYWB] Length = 83 Score = 91.8 bits (227), Expect = 1e-16, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 36/83 (43%), Gaps = 3/83 (3%) Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70 ++ H+ VL ++ I L P + +DAT G G++ + + + D+D A Sbjct: 1 MNKQNFHHISVLKKEAIDFLKIKPEGIYVDATLGQCGHTIEIANLLQQGFLYSFDQDVEA 60 Query: 71 VSCGQETMRDYKEQFSLFQATFS 93 + ++T+ + + + F Sbjct: 61 CTNAKKTLSPHLP-IEIIHSIFR 82 >gi|260889236|ref|ZP_05900499.1| S-adenosyl-methyltransferase MraW [Leptotrichia hofstadii F0254] gi|260861296|gb|EEX75796.1| S-adenosyl-methyltransferase MraW [Leptotrichia hofstadii F0254] Length = 78 Score = 88.7 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 3/63 (4%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQE 76 H PVL ++VI + V +D T G GG++ + S V+A+D+D A+ ++ Sbjct: 4 HKPVLFDEVIDNIITKKDAVYVDCTLGGGGHTEGILENSSENSKVVAIDQDTEAIEFAKK 63 Query: 77 TMR 79 ++ Sbjct: 64 DLK 66 >gi|169841872|ref|ZP_02874981.1| Methyltransferase [candidate division TM7 single-cell isolate TM7a] Length = 78 Score = 87.9 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 1/71 (1%) Query: 103 GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILG 161 VD ++ D+GVSS Q+D RGFS++ LDMRM S ISA +VVN + K++ I+ Sbjct: 8 KVDRILMDIGVSSNQLDNAKRGFSYRFEARLDMRMDSSLKISAYEVVNDFSEKEIADIIY 67 Query: 162 ILGEEKQASRI 172 GEE ++ +I Sbjct: 68 KYGEEPKSRKI 78 >gi|222831815|gb|EEE70292.1| predicted protein [Populus trichocarpa] Length = 81 Score = 87.5 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 6/81 (7%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDR 66 + + T H VLL++ + L P +D TFG GG+SR+ ++A D+ Sbjct: 4 TESPGTTTLRHRTVLLDEAVDALVWRPDGAYVDGTFGRGGHSRAVLARLGPAGTLVAFDK 63 Query: 67 DPFAVSCGQETMRDYKEQFSL 87 DP A++ +FS+ Sbjct: 64 DPAAIAEAGTI---KDARFSI 81 >gi|225389939|ref|ZP_03759663.1| hypothetical protein CLOSTASPAR_03689 [Clostridium asparagiforme DSM 15981] gi|225044001|gb|EEG54247.1| hypothetical protein CLOSTASPAR_03689 [Clostridium asparagiforme DSM 15981] Length = 64 Score = 87.2 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 255 DRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 DR+VKK F + + + + IT+K ++P++E++ N RS+SAKLR Sbjct: 1 DRIVKKRFRESEHPCICPPDFPVCVCGRVSRGRVITRKPILPSEEELEVNSRSKSAKLRV 60 Query: 314 GMR 316 R Sbjct: 61 FER 63 >gi|169839617|ref|ZP_02872805.1| S-adenosyl-methyltransferase [candidate division TM7 single-cell isolate TM7a] Length = 67 Score = 85.2 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 1/66 (1%) Query: 254 EDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312 EDR+VK+ F + I ++ + IT+K +V ++ N R+ SAKLR Sbjct: 2 EDRIVKEKFREYEDPCTCPKDIPICVCNKKSLGKIITRKPIVAKTSELEENNRAHSAKLR 61 Query: 313 AGMRTV 318 R+ Sbjct: 62 IFERSE 67 >gi|254469046|ref|ZP_05082452.1| S-adenosyl-methyltransferase MraW [beta proteobacterium KB13] gi|207087856|gb|EDZ65139.1| S-adenosyl-methyltransferase MraW [beta proteobacterium KB13] Length = 96 Score = 81.4 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 40/92 (43%), Gaps = 6/92 (6%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQE 76 H P++ +V L LD TFG GG+S+ + +IA+D+D A++ + Sbjct: 6 HFPIMRYEVTKHLIIDKNGKYLDCTFGRGGHSKIILDSLEQKGELIAIDKDHEAINSAKS 65 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVV 108 E+F + ++ + K + G + Sbjct: 66 I---QDERFEIHHSSILNFAKSLKKKVLMGYL 94 >gi|13537274|dbj|BAB40624.1| hypothetical protein [Vibrio natriegens] gi|13537277|dbj|BAB40626.1| hypothetical protein [Vibrio harveyi] gi|13537280|dbj|BAB40628.1| hypothetical protein [Vibrio harveyi] Length = 51 Score = 81.0 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 21/45 (46%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN 60 H+ VLL + I L P + +D TFG GG+SR+ Sbjct: 3 ETFQHISVLLNESIDGLAIKPDGIYIDGTFGRGGHSRTILSKLGE 47 >gi|13537271|dbj|BAB40622.1| hypothetical protein [Vibrio alginolyticus] Length = 51 Score = 81.0 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 16/45 (35%), Positives = 21/45 (46%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN 60 H+ VLL + I L P V +D TFG GG+SR+ Sbjct: 3 ETFQHISVLLNESIDGLAIKPDGVYIDGTFGRGGHSRTILSKLGE 47 >gi|289809859|ref|ZP_06540488.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 73 Score = 79.1 bits (194), Expect = 9e-13, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 7/73 (9%) Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF-----QSITKKVVVPTQEDVAFNR 304 FHSLEDR+VK+F +S + + A +++ K ++P +++VA N Sbjct: 1 FHSLEDRIVKRFMREQSRGPQVPAGLPMTEAQLKKLGGRELRALGK--LMPGEKEVAENP 58 Query: 305 RSRSAKLRAGMRT 317 R+RS+ LR RT Sbjct: 59 RARSSVLRIAERT 71 >gi|237732706|ref|ZP_04563187.1| predicted protein [Mollicutes bacterium D7] gi|229384222|gb|EEO34313.1| predicted protein [Coprobacillus sp. D7] Length = 117 Score = 76.0 bits (186), Expect = 7e-12, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 35/67 (52%), Gaps = 3/67 (4%) Query: 5 SCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNV 61 + + + +G H+ +++++++ L+ G++ LD T G GG++ + ++ Sbjct: 50 TIEKVIKKGSTPVGMHLSIMVDEILEFLDIQEGQIGLDCTLGYGGHTLKMLECLNYTGHM 109 Query: 62 IALDRDP 68 ALD DP Sbjct: 110 YALDIDP 116 >gi|2463559|dbj|BAA22552.1| unnamed protein product [Staphylococcus aureus] Length = 65 Score = 74.8 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%) Query: 255 DRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 DRL K+ F R + A+ + + +K + T+ED+ N R+RSAKLR Sbjct: 1 DRLCKQVFQEYEKGPEVPRGLPVIPEAYTPKLKRVNRKPITATEEDLDDNNRARSAKLRV 60 Query: 314 GM 315 Sbjct: 61 AE 62 >gi|207111120|ref|ZP_03245282.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori HPKX_438_CA4C1] Length = 65 Score = 66.7 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 34/67 (50%), Positives = 44/67 (65%), Gaps = 3/67 (4%) Query: 163 LGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVN 222 GE K+ +IAH I +RR PF+ +DLS + FSKN +IHPAT FQA+RI VN Sbjct: 1 YGEIKEYKKIAHKIAERRAKKPFKDAKDLSEFLSS---FSKNKKIHPATLVFQAVRIEVN 57 Query: 223 NEIEELA 229 +E+EEL Sbjct: 58 SELEELK 64 >gi|213026454|ref|ZP_03340901.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 58 Score = 66.4 bits (161), Expect = 6e-09, Method: Composition-based stats. Identities = 27/59 (45%), Positives = 41/59 (69%), Gaps = 1/59 (1%) Query: 171 RIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELA 229 RIAHAIV+R + P T++L+ ++ K+ HPATR+FQA+RI+VN+E+EE+ Sbjct: 1 RIAHAIVERNREQPMTRTKELAEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIE 58 >gi|309807739|ref|ZP_07701673.1| conserved hypothetical protein [Lactobacillus iners LactinV 01V1-a] gi|308168999|gb|EFO71083.1| conserved hypothetical protein [Lactobacillus iners LactinV 01V1-a] Length = 44 Score = 64.4 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 22/39 (56%) Query: 278 SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 ++ + I++K +V T +++ N RS SAKLR + Sbjct: 5 PDSLKPTLKIISRKPIVATDKELEENNRSHSAKLRVAEK 43 >gi|309804772|ref|ZP_07698836.1| conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c] gi|309809951|ref|ZP_07703799.1| conserved hypothetical protein [Lactobacillus iners SPIN 2503V10-D] gi|308165882|gb|EFO68101.1| conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c] gi|308169739|gb|EFO71784.1| conserved hypothetical protein [Lactobacillus iners SPIN 2503V10-D] Length = 44 Score = 62.5 bits (151), Expect = 8e-08, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 22/39 (56%) Query: 278 SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 ++ + I++K +V T +++ N RS SAKLR + Sbjct: 5 PDSLKPTLKIISRKPIVATNKELEENNRSHSAKLRVAEK 43 >gi|2739245|emb|CAA05400.1| hypothetical protein [Campylobacter jejuni] Length = 44 Score = 62.5 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 14/41 (34%), Positives = 19/41 (46%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS 59 H+PVLL +V + LD T G GG+S + K Sbjct: 4 PHIPVLLNEVQKIFKNLKTGYFLDCTLGFGGHSEALLKNHP 44 >gi|309806340|ref|ZP_07700353.1| conserved hypothetical protein [Lactobacillus iners LactinV 03V1-b] gi|308167324|gb|EFO69490.1| conserved hypothetical protein [Lactobacillus iners LactinV 03V1-b] Length = 44 Score = 62.1 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 22/39 (56%) Query: 278 SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 ++ + I++K +V T +++ N RS SAKLR + Sbjct: 5 PDSLKPTLKIISRKPIVATNKELEANNRSHSAKLRVAEK 43 >gi|260588799|ref|ZP_05854712.1| putative rRNA methylase [Blautia hansenii DSM 20583] gi|331084442|ref|ZP_08333545.1| hypothetical protein HMPREF0992_02469 [Lachnospiraceae bacterium 6_1_63FAA] gi|260540882|gb|EEX21451.1| putative rRNA methylase [Blautia hansenii DSM 20583] gi|330401538|gb|EGG81122.1| hypothetical protein HMPREF0992_02469 [Lachnospiraceae bacterium 6_1_63FAA] Length = 188 Score = 61.3 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 5/87 (5%) Query: 32 LNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDYK--EQFS 86 L P + +DAT G G + C++ V+A D A+ C + ++++ + Sbjct: 16 LQVNPNGLYIDATMGNGYDTLFLCELAGESGKVLAFDVQEKAIMCTTKLLKEHNVENRAK 75 Query: 87 LFQATFSQLQDYVPDKGVDGVVFDLGV 113 L+ + + +Y VDG+ F+ G Sbjct: 76 LYLDSHENMDEYAEAGSVDGIYFNFGY 102 >gi|330950234|gb|EGH50494.1| hypothetical protein PSYCIT7_02272 [Pseudomonas syringae Cit 7] Length = 41 Score = 61.3 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 13/30 (43%), Positives = 16/30 (53%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGG 49 H+ VLLE+ + L LD TFG GG Sbjct: 9 HITVLLEEAVEALAVRADGCYLDGTFGRGG 38 >gi|255017463|ref|ZP_05289589.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL F2-515] Length = 33 Score = 61.0 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 13/30 (43%), Positives = 22/30 (73%) Query: 289 TKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318 T+K +VP++E++ N R+RSAKLR + + Sbjct: 3 TRKPIVPSEEELEQNNRARSAKLRVIEKII 32 >gi|317496762|ref|ZP_07955092.1| hypothetical protein HMPREF0996_00071 [Lachnospiraceae bacterium 5_1_63FAA] gi|316895774|gb|EFV17926.1| hypothetical protein HMPREF0996_00071 [Lachnospiraceae bacterium 5_1_63FAA] Length = 184 Score = 59.8 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 3/83 (3%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDYKEQFSLFQA 90 G +DAT G GG + C V A D A+ +E + +K L Sbjct: 17 IKEGDCCIDATMGKGGDTYYLCSKTGESGKVYAFDVQADALRQTREKLDKHKMNAELILD 76 Query: 91 TFSQLQDYVPDKGVDGVVFDLGV 113 +++YV + V ++F+LG Sbjct: 77 GHEHMKEYVKEMAVSCIMFNLGY 99 >gi|291559257|emb|CBL38057.1| Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [butyrate-producing bacterium SSC/2] Length = 180 Score = 59.8 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 3/83 (3%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDYKEQFSLFQA 90 G +DAT G GG + C V A D A+ +E + +K L Sbjct: 13 IKEGDCCIDATMGKGGDTYYLCSKTGESGKVYAFDVQADALRQTREKLDKHKMNAELILD 72 Query: 91 TFSQLQDYVPDKGVDGVVFDLGV 113 +++YV + V ++F+LG Sbjct: 73 GHEHMKEYVKEMAVSCIMFNLGY 95 >gi|167767427|ref|ZP_02439480.1| hypothetical protein CLOSS21_01946 [Clostridium sp. SS2/1] gi|167711402|gb|EDS21981.1| hypothetical protein CLOSS21_01946 [Clostridium sp. SS2/1] Length = 184 Score = 59.8 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 3/83 (3%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDYKEQFSLFQA 90 G +DAT G GG + C V A D A+ +E + +K L Sbjct: 17 IKEGDCCIDATMGKGGDTYYLCSKTGESGKVYAFDVQADALRQTREKLDKHKMNAELILD 76 Query: 91 TFSQLQDYVPDKGVDGVVFDLGV 113 +++YV + V ++F+LG Sbjct: 77 GHEHMKEYVKEMAVSCIMFNLGY 99 >gi|257870816|ref|ZP_05650469.1| SAM-dependent methyltransferase [Enterococcus gallinarum EG2] gi|257804980|gb|EEV33802.1| SAM-dependent methyltransferase [Enterococcus gallinarum EG2] Length = 186 Score = 57.9 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 28/100 (28%), Positives = 42/100 (42%), Gaps = 15/100 (15%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQ 75 H LL++V+ PG+ ++DAT G G+ V A D AV+ + Sbjct: 5 HT--LLQEVV-----KPGQTVVDATMGN-GHDTELLATLVGPEGKVYAFDIQEQAVTTTK 56 Query: 76 ETM--RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 E + + Q L + DYVPD V +F+LG Sbjct: 57 ERLLAKGLLPQVELIHQGHETVADYVPD-AVHAAIFNLGY 95 >gi|148828290|ref|YP_001293043.1| S-adenosyl-methyltransferase [Haemophilus influenzae PittGG] gi|148719532|gb|ABR00660.1| S-adenosyl-methyltransferase [Haemophilus influenzae PittGG] Length = 43 Score = 57.9 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 12/31 (38%), Positives = 16/31 (51%) Query: 287 SITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 I K + P+ ++ N RSRSA LR R Sbjct: 13 RIIGKAIQPSDAEIQVNPRSRSAILRVAERI 43 >gi|311069541|ref|YP_003974464.1| putative RNA methylase [Bacillus atrophaeus 1942] gi|310870058|gb|ADP33533.1| putative RNA methylase [Bacillus atrophaeus 1942] Length = 194 Score = 56.7 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 45/96 (46%), Gaps = 10/96 (10%) Query: 26 EKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETM-RD 80 ++++ + G +++DAT G G+ F +V A D A++ +E + + Sbjct: 11 KELLQMAADK-GSIVVDATMGN-GHDTLFLAKLVGENGHVYAFDIQESALAATRERLGEE 68 Query: 81 YKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGV 113 Y + +LF + ++ + +P D V +F+LG Sbjct: 69 YGPRVTLFHKSHDKIAESLPPEADGRVAAAIFNLGY 104 >gi|213416741|ref|ZP_03349885.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 32 Score = 55.6 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 10/27 (37%), Positives = 15/27 (55%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATF 45 H VLL++ + LN P + +D TF Sbjct: 6 KHTTVLLDEAVNGLNIRPDGIYIDGTF 32 >gi|225574953|ref|ZP_03783563.1| hypothetical protein RUMHYD_03032 [Blautia hydrogenotrophica DSM 10507] gi|225037800|gb|EEG48046.1| hypothetical protein RUMHYD_03032 [Blautia hydrogenotrophica DSM 10507] Length = 187 Score = 55.6 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 5/86 (5%) Query: 33 NPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMRDYK--EQFSL 87 PG + +DAT G G ++ C+ G V+A D A+ +E +R E + L Sbjct: 17 QIRPGDLCIDATMGNGKDTQVLCELTGKGGKVLAFDIQECALQATRERLRRAGVPENYEL 76 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGV 113 + + + +Y + V +VF+LG Sbjct: 77 YCRSHVHMDEYAKEGSVSCIVFNLGY 102 >gi|213022917|ref|ZP_03337364.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 65 Score = 55.6 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 7/64 (10%) Query: 259 KKFFASRSGKVMAVRHMIPSNAHPAVF-----QSITKKVVVPTQEDVAFNRRSRSAKLRA 313 K+F +S + + A +++ K ++P +++VA N R+RS+ LR Sbjct: 2 KRFMREQSRGPQVPAGLPMTEAQLKKLGGRELRALGK--LMPGEKEVAENPRARSSVLRI 59 Query: 314 GMRT 317 RT Sbjct: 60 AERT 63 >gi|313884623|ref|ZP_07818381.1| putative rRNA methylase [Eremococcus coleocola ACS-139-V-Col8] gi|312620133|gb|EFR31564.1| putative rRNA methylase [Eremococcus coleocola ACS-139-V-Col8] Length = 194 Score = 55.2 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 49/113 (43%), Gaps = 17/113 (15%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGY-SRSFCKM---GSNVIAL 64 M SA+H++ H LL +I P +DAT G G+ + + V+A Sbjct: 1 MQSALHYS---HQ--LLTALIDRF---PKGTFVDATLGN-GHDTAFILQKPNFHGQVLAF 51 Query: 65 DRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYV-PDKGVDGVVFDLGV 113 D A++ Q+ + ++ L + + L+ ++ P + + +F+LG Sbjct: 52 DIQDQALTNSQDRLNKLGLDPSRYQLIHDSHANLEAHLTPGQKLQAAIFNLGY 104 >gi|255635058|gb|ACU17887.1| unknown [Glycine max] Length = 140 Score = 54.4 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 23/45 (51%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS 59 T HVPV+L +V+ + + + +D T GA G+S + K Sbjct: 80 DTKFSHVPVMLGEVLDVFSNSTLTSFVDCTLGAAGHSTASLKYFG 124 >gi|220932037|ref|YP_002508945.1| putative rRNA methylase [Halothermothrix orenii H 168] gi|219993347|gb|ACL69950.1| putative rRNA methylase [Halothermothrix orenii H 168] Length = 196 Score = 54.0 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 7/86 (8%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK--EQFSL 87 G ++DAT G G+ F V + D A+ + +++ E+ L Sbjct: 26 VKKGSTVIDATAGN-GHDTCFLASLVGEKGQVYSFDIQKKAIEKTKALLKEQNLEERVYL 84 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGV 113 L +Y+ + +DGV+F+LG Sbjct: 85 IHDGHENLDNYIKGQFIDGVIFNLGY 110 >gi|291543851|emb|CBL16960.1| Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Ruminococcus sp. 18P13] Length = 190 Score = 54.0 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 41/106 (38%), Gaps = 20/106 (18%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC----KMGSNVIALDRDPF 69 H I +HV PG + +DAT G G+ + +V A D Sbjct: 13 HKFIREHV-------------KPGDLCIDATAGR-GHDTALLCGLVGETGHVTAFDIQSD 58 Query: 70 AVSCGQETMRD--YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 A++ + + Y ++ ++ Q + S + +Y + + F+ G Sbjct: 59 AIASTNARLAELGYTDRATVIQGSHSTMGEYAQPGTISCITFNFGW 104 >gi|330950232|gb|EGH50492.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae Cit 7] Length = 49 Score = 53.6 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 1/45 (2%) Query: 273 RHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316 +P P + I K + + N RSRSA +R + Sbjct: 3 PRNLPIQFKPFEPKIKIHGKAQFASDVETKANPRSRSAVMRVAEK 47 >gi|23099763|ref|NP_693229.1| hypothetical protein OB2308 [Oceanobacillus iheyensis HTE831] gi|22777993|dbj|BAC14264.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 191 Score = 53.6 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 9/94 (9%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMRD 80 LLE+ I+ G+V++DAT G G + + +V A D A+ ++ + Sbjct: 18 LLEESIS-----EGEVVIDATCGNGNDTLFLSRVVGKSGHVYAFDIQQQAIQNTKQALEK 72 Query: 81 Y-KEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 Y +L + + ++DYV + G +F+LG Sbjct: 73 YHNNNVTLIHGSHALIEDYVQHDVIGGAIFNLGY 106 >gi|257866928|ref|ZP_05646581.1| SAM-dependent methyltransferase [Enterococcus casseliflavus EC30] gi|257873261|ref|ZP_05652914.1| SAM-dependent methyltransferase [Enterococcus casseliflavus EC10] gi|257800984|gb|EEV29914.1| SAM-dependent methyltransferase [Enterococcus casseliflavus EC30] gi|257807425|gb|EEV36247.1| SAM-dependent methyltransferase [Enterococcus casseliflavus EC10] Length = 187 Score = 53.6 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 41/107 (38%), Gaps = 14/107 (13%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H LL++V+ PG+ +DAT G G + + V A D A+ ++ Sbjct: 5 HT--LLKEVL-----QPGQTAVDATMGNGFDTELLASLVGPTGQVFAFDIQEQALQATKK 57 Query: 77 TMRDYK--EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCG 121 + + + Q L L + V V +F+LG Q D Sbjct: 58 RLAEKELLAQVQLIHQGHETLAEVVSGP-VHAAIFNLGYL-PQGDKA 102 >gi|225181671|ref|ZP_03735111.1| putative rRNA methylase [Dethiobacter alkaliphilus AHT 1] gi|225167652|gb|EEG76463.1| putative rRNA methylase [Dethiobacter alkaliphilus AHT 1] Length = 184 Score = 53.3 bits (127), Expect = 5e-05, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 11/91 (12%) Query: 37 GKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQA 90 G V +DAT G G+ F G V+A D AV +E + + ++ L+ Sbjct: 19 GGVAVDATCGN-GHDTLFLAQQVGPGGTVLAFDIQQQAVDATKERLAEAALLDRVQLYTD 77 Query: 91 TFSQLQDYVPDKGVDGVVFDLGV---SSMQI 118 + + L DYV G+D ++F+LG S ++ Sbjct: 78 SHANLDDYV-QSGIDAMMFNLGYLPGSDHEV 107 >gi|269962646|ref|ZP_06176991.1| sun protein [Vibrio harveyi 1DA3] gi|269832569|gb|EEZ86683.1| sun protein [Vibrio harveyi 1DA3] Length = 427 Score = 53.3 bits (127), Expect = 5e-05, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85 I L P G++ILD GG + + GS V+A+D D + E ++ Q Sbjct: 235 SINYLEPKDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKRLNLQA 294 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + Q++ + D ++ D S Sbjct: 295 KVVCGDARNPQEWWQGEQFDRILLDAPCS 323 >gi|317471246|ref|ZP_07930611.1| hypothetical protein HMPREF1011_00959 [Anaerostipes sp. 3_2_56FAA] gi|316901293|gb|EFV23242.1| hypothetical protein HMPREF1011_00959 [Anaerostipes sp. 3_2_56FAA] Length = 183 Score = 53.3 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 30/80 (37%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFS 93 G + +DAT G GG + C + VI + A+ + + L + Sbjct: 17 IRQGDLCIDATVGNGGDTEYLCGLTDRVIGFEIQEEALLNTGKRLELKGYHPELILDSHE 76 Query: 94 QLQDYVPDKGVDGVVFDLGV 113 + Y V ++F+LG Sbjct: 77 NMDRYAEKGTVQAILFNLGY 96 >gi|163803318|ref|ZP_02197196.1| methionyl-tRNA formyltransferase [Vibrio sp. AND4] gi|159172888|gb|EDP57727.1| methionyl-tRNA formyltransferase [Vibrio sp. AND4] Length = 427 Score = 53.3 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85 I L P G++ILD GG + + GS V+A+D D + E ++ Q Sbjct: 235 SINYLEPKDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKRLNLQA 294 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + Q++ + D ++ D S Sbjct: 295 KVVCGDARHPQEWWQGEQFDRILLDAPCS 323 >gi|167746441|ref|ZP_02418568.1| hypothetical protein ANACAC_01151 [Anaerostipes caccae DSM 14662] gi|167653401|gb|EDR97530.1| hypothetical protein ANACAC_01151 [Anaerostipes caccae DSM 14662] Length = 190 Score = 53.3 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 30/80 (37%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFS 93 G + +DAT G GG + C + VI + A+ + + L + Sbjct: 24 IRQGDLCIDATVGNGGDTEYLCGLTDRVIGFEIQEEALLNTGKRLELKGYHPELILDSHE 83 Query: 94 QLQDYVPDKGVDGVVFDLGV 113 + Y V ++F+LG Sbjct: 84 NMDRYAEKGTVQAILFNLGY 103 >gi|153834294|ref|ZP_01986961.1| ribosomal RNA small subunit methyltransferase B [Vibrio harveyi HY01] gi|148869302|gb|EDL68316.1| ribosomal RNA small subunit methyltransferase B [Vibrio harveyi HY01] Length = 427 Score = 53.3 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85 I L P G++ILD GG + + GS V+A+D D + E ++ Q Sbjct: 235 SINYLEPKDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKRLNLQA 294 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + Q++ + D ++ D S Sbjct: 295 KVVCGDARHPQEWWQGEQFDRILLDAPCS 323 >gi|156972728|ref|YP_001443635.1| cytosine-C5-methylase [Vibrio harveyi ATCC BAA-1116] gi|156524322|gb|ABU69408.1| hypothetical protein VIBHAR_00393 [Vibrio harveyi ATCC BAA-1116] Length = 427 Score = 53.3 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85 I L P G++ILD GG + + GS V+A+D D + E ++ Q Sbjct: 235 SINYLEPKDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKRLNLQA 294 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + Q++ + D ++ D S Sbjct: 295 KVVCGDARHPQEWWQGEQFDRILLDAPCS 323 >gi|3288669|dbj|BAA31227.1| Fmv [Vibrio alginolyticus] Length = 225 Score = 52.9 bits (126), Expect = 7e-05, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85 I L P G++ILD GG + + GS V+A+D D + E ++ Q Sbjct: 33 SINYLKPQDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKRLNLQA 92 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + Q++ + D ++ D S Sbjct: 93 KVVCGDARNPQEWWQGEQFDRILLDAPCS 121 >gi|328471169|gb|EGF42071.1| 16S rRNA methyltransferase B [Vibrio parahaemolyticus 10329] Length = 427 Score = 52.9 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85 I L P G++ILD GG + + GS V+A+D D + E ++ Q Sbjct: 235 SINYLKPQDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKRLNLQA 294 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + Q++ + D ++ D S Sbjct: 295 KVVCGDARNPQEWWQGEQFDRILLDAPCS 323 >gi|153837662|ref|ZP_01990329.1| ribosomal RNA small subunit methyltransferase B [Vibrio parahaemolyticus AQ3810] gi|149748952|gb|EDM59779.1| ribosomal RNA small subunit methyltransferase B [Vibrio parahaemolyticus AQ3810] Length = 427 Score = 52.9 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85 I L P G++ILD GG + + GS V+A+D D + E ++ Q Sbjct: 235 SINYLKPQDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKRLNLQA 294 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + Q++ + D ++ D S Sbjct: 295 KVVCGDARNPQEWWQGEQFDRILLDAPCS 323 >gi|326407897|gb|ADZ64968.1| SAM-dependent methyltransferase [Lactococcus lactis subsp. lactis CV56] Length = 196 Score = 52.9 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 3/75 (4%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFS 93 V++DAT G G ++ ++G+NV A D A++ ++ + D + +F+ S Sbjct: 16 IKTNDVVVDATMGNGYDTQFLAELGANVYAFDVQEEALNATEKRLDDAGIKNQIFEKNLS 75 Query: 94 QLQDYVPDKGVDGVV 108 L + + V+ V+ Sbjct: 76 NL---LTEPSVNLVL 87 >gi|281492941|ref|YP_003354921.1| SAM-dependent methyltransferase [Lactococcus lactis subsp. lactis KF147] gi|281376593|gb|ADA66079.1| SAM-dependent methyltransferase [Lactococcus lactis subsp. lactis KF147] Length = 196 Score = 52.9 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 3/75 (4%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFS 93 V++DAT G G ++ ++G+NV A D A++ ++ + D + +F+ S Sbjct: 16 IKTNDVVVDATMGNGYDTQFLAELGANVYAFDVQEEALNATEKRLDDAGIKNQIFEKNLS 75 Query: 94 QLQDYVPDKGVDGVV 108 L + + V+ V+ Sbjct: 76 NL---LTEPSVNLVL 87 >gi|269967001|ref|ZP_06181071.1| sun protein [Vibrio alginolyticus 40B] gi|269828395|gb|EEZ82659.1| sun protein [Vibrio alginolyticus 40B] Length = 427 Score = 52.9 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85 I L P G++ILD GG + + GS V+A+D D + E ++ Q Sbjct: 235 SINYLKPQDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKRLNLQA 294 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + Q++ + D ++ D S Sbjct: 295 KVVCGDARNPQEWWQGEQFDRILLDAPCS 323 >gi|260901337|ref|ZP_05909732.1| ribosomal RNA small subunit methyltransferase B [Vibrio parahaemolyticus AQ4037] gi|308109871|gb|EFO47411.1| ribosomal RNA small subunit methyltransferase B [Vibrio parahaemolyticus AQ4037] Length = 427 Score = 52.9 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85 I L P G++ILD GG + + GS V+A+D D + E ++ Q Sbjct: 235 SINYLKPQDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKRLNLQA 294 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + Q++ + D ++ D S Sbjct: 295 KVVCGDARNPQEWWQGEQFDRILLDAPCS 323 >gi|91226301|ref|ZP_01261141.1| Sun protein [Vibrio alginolyticus 12G01] gi|91189312|gb|EAS75591.1| Sun protein [Vibrio alginolyticus 12G01] Length = 427 Score = 52.9 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85 I L P G++ILD GG + + GS V+A+D D + E ++ Q Sbjct: 235 SINYLKPQDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKRLNLQA 294 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + Q++ + D ++ D S Sbjct: 295 KVVCGDARNPQEWWQGEQFDRILLDAPCS 323 >gi|28899818|ref|NP_799423.1| Sun protein [Vibrio parahaemolyticus RIMD 2210633] gi|260362016|ref|ZP_05775021.1| ribosomal RNA small subunit methyltransferase B [Vibrio parahaemolyticus K5030] gi|260876497|ref|ZP_05888852.1| ribosomal RNA small subunit methyltransferase B [Vibrio parahaemolyticus AN-5034] gi|260897446|ref|ZP_05905942.1| ribosomal RNA small subunit methyltransferase B [Vibrio parahaemolyticus Peru-466] gi|46396865|sp|Q87KD3|RSMB_VIBPA RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|28808070|dbj|BAC61307.1| Sun protein [Vibrio parahaemolyticus RIMD 2210633] gi|308087890|gb|EFO37585.1| ribosomal RNA small subunit methyltransferase B [Vibrio parahaemolyticus Peru-466] gi|308090396|gb|EFO40091.1| ribosomal RNA small subunit methyltransferase B [Vibrio parahaemolyticus AN-5034] gi|308114191|gb|EFO51731.1| ribosomal RNA small subunit methyltransferase B [Vibrio parahaemolyticus K5030] Length = 427 Score = 52.9 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85 I L P G++ILD GG + + GS V+A+D D + E ++ Q Sbjct: 235 SINYLKPQDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKRLNLQA 294 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + Q++ + D ++ D S Sbjct: 295 KVVCGDARNPQEWWQGEQFDRILLDAPCS 323 >gi|254229997|ref|ZP_04923398.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. Ex25] gi|262392829|ref|YP_003284683.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. Ex25] gi|151937499|gb|EDN56356.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. Ex25] gi|262336423|gb|ACY50218.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. Ex25] Length = 427 Score = 52.9 bits (126), Expect = 8e-05, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85 I L P G++ILD GG + + GS V+A+D D + E ++ Q Sbjct: 235 SINYLKPQDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKRLNLQA 294 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + Q++ + D ++ D S Sbjct: 295 KVVCGDARNPQEWWQGEQFDRILLDAPCS 323 >gi|269929255|ref|YP_003321576.1| methyltransferase type 11 [Sphaerobacter thermophilus DSM 20745] gi|269788612|gb|ACZ40754.1| Methyltransferase type 11 [Sphaerobacter thermophilus DSM 20745] Length = 258 Score = 52.5 bits (125), Expect = 9e-05, Method: Composition-based stats. Identities = 45/226 (19%), Positives = 72/226 (31%), Gaps = 36/226 (15%) Query: 29 IALLNPAPGKVILDATFGAG-GY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFS 86 I LL P PG+ ILD G G G+ +R+ G++V ++DRDP ++ + D + Sbjct: 32 IDLLAPQPGERILD--LGCGTGHLTRAIADHGAHVTSIDRDPAMIAHARANYPDLPFEV- 88 Query: 87 LFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASD 146 P+ D V FS + L G +AS Sbjct: 89 ------GDAAHLAPEHPFDAV-----------------FS---NAVLHWISDAEGAAASI 122 Query: 147 VVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNR 206 L G G K V+ P +T S+ + V + + Sbjct: 123 RRALRPGGRLVAEFGGRGNVKVIVDAVADAVEAAGHTPVRTPWYFPSIGEYAVVL-ERHG 181 Query: 207 IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG----GLLIVV 248 + P + ++ + L L L AG V+ Sbjct: 182 LEPIWMALIDRPTPLDGGADGLRLWLTMFGDRLLAGVPADARDAVI 227 >gi|262402050|ref|ZP_06078614.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. RC586] gi|262351696|gb|EEZ00828.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. RC586] Length = 426 Score = 52.5 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQF 85 + L P G++ILD GG + + + V+A+D D + QE ++ K Sbjct: 235 ALTYLAPKAGELILDCCAAPGGKTAHILERTPDSQVVAIDCDETRLKRVQENLQRLKLNA 294 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + QD+ D+ D ++ D S Sbjct: 295 QVICGDARYPQDWWQDEQFDRILLDAPCS 323 >gi|126667181|ref|ZP_01738155.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Marinobacter sp. ELB17] gi|126628337|gb|EAZ98960.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Marinobacter sp. ELB17] Length = 441 Score = 52.1 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 40/93 (43%), Gaps = 7/93 (7%) Query: 23 VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82 V++++ I L+ PG+ +LD G G ++ + G V+ ++ D V G+E Sbjct: 280 VMVKRAIDWLDVQPGERVLDLFCGLGNFTLPLARRGGQVVGVEGDDAMVERGRENAALNG 339 Query: 83 -EQFSLF----QATFSQLQDYVPDKGVDGVVFD 110 + + F F+ +G D ++ D Sbjct: 340 LDNVTFFGADLHGDFT--GQSWAKEGFDKILID 370 >gi|15674247|ref|NP_268422.1| hypothetical protein L141634 [Lactococcus lactis subsp. lactis Il1403] gi|12725336|gb|AAK06363.1|AE006455_9 hypothetical protein L141634 [Lactococcus lactis subsp. lactis Il1403] Length = 196 Score = 52.1 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 38/75 (50%), Gaps = 3/75 (4%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFS 93 V++DAT G G ++ ++G+NV A D A++ ++ + D + +F+ S Sbjct: 16 IKTNDVVVDATMGNGYDTQFLAELGANVYAFDVQEEALNATEKRLDDAGIKNQIFEKNLS 75 Query: 94 QLQDYVPDKGVDGVV 108 +L + + V+ V+ Sbjct: 76 KL---LTEPSVNLVL 87 >gi|229823229|ref|ZP_04449298.1| hypothetical protein GCWU000282_00527 [Catonella morbi ATCC 51271] gi|229787395|gb|EEP23509.1| hypothetical protein GCWU000282_00527 [Catonella morbi ATCC 51271] Length = 189 Score = 52.1 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 46/124 (37%), Gaps = 19/124 (15%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMG---SNVIAL 64 M A+H++ H LL +I P V +D T G G+ + V+ Sbjct: 1 MQRALHYS---HT--LLAALIQRF---PDGVYIDGTLGK-GHDTAFILSQPGFCGQVMGF 51 Query: 65 DRDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPD-KGVDGVVFDLGVS---SMQI 118 D A++ QE + + L A+ Q+ + + G +++LG QI Sbjct: 52 DIQDQALAWTQERLAKLPNKESAQLLLASHDQIHKLLAEVPQFSGAIYNLGYLPGGDHQI 111 Query: 119 DCGD 122 + Sbjct: 112 TTQE 115 >gi|257437488|ref|ZP_05613243.1| putative rRNA methylase [Faecalibacterium prausnitzii A2-165] gi|257200056|gb|EEU98340.1| putative rRNA methylase [Faecalibacterium prausnitzii A2-165] Length = 285 Score = 52.1 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 3/76 (3%) Query: 41 LDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD 97 +DAT G GG + C++ G V+ D P A++ ++ + L + + L Sbjct: 125 IDATCGNGGDTAFLCRLVGEGGRVLGFDIQPEAIASTRQNLARKGLAAELHCDSHANLLQ 184 Query: 98 YVPDKGVDGVVFDLGV 113 YV VD V+F+ G Sbjct: 185 YVQPGTVDAVMFNFGW 200 >gi|126699666|ref|YP_001088563.1| hypothetical protein CD2049 [Clostridium difficile 630] gi|254975637|ref|ZP_05272109.1| hypothetical protein CdifQC_10019 [Clostridium difficile QCD-66c26] gi|255093024|ref|ZP_05322502.1| hypothetical protein CdifC_10279 [Clostridium difficile CIP 107932] gi|255101181|ref|ZP_05330158.1| hypothetical protein CdifQCD-6_10259 [Clostridium difficile QCD-63q42] gi|255307055|ref|ZP_05351226.1| hypothetical protein CdifA_10732 [Clostridium difficile ATCC 43255] gi|255314766|ref|ZP_05356349.1| hypothetical protein CdifQCD-7_10477 [Clostridium difficile QCD-76w55] gi|255517441|ref|ZP_05385117.1| hypothetical protein CdifQCD-_10066 [Clostridium difficile QCD-97b34] gi|255650551|ref|ZP_05397453.1| hypothetical protein CdifQCD_10241 [Clostridium difficile QCD-37x79] gi|255656020|ref|ZP_05401429.1| hypothetical protein CdifQCD-2_10044 [Clostridium difficile QCD-23m63] gi|260683649|ref|YP_003214934.1| hypothetical protein CD196_1913 [Clostridium difficile CD196] gi|260687309|ref|YP_003218443.1| hypothetical protein CDR20291_1956 [Clostridium difficile R20291] gi|296450551|ref|ZP_06892305.1| rRNA methylase [Clostridium difficile NAP08] gi|296879327|ref|ZP_06903322.1| rRNA methylase [Clostridium difficile NAP07] gi|306520499|ref|ZP_07406846.1| hypothetical protein CdifQ_11806 [Clostridium difficile QCD-32g58] gi|115251103|emb|CAJ68934.1| putative rRNA methylase [Clostridium difficile] gi|260209812|emb|CBA63659.1| conserved hypothetical protein [Clostridium difficile CD196] gi|260213326|emb|CBE04904.1| conserved hypothetical protein [Clostridium difficile R20291] gi|296260626|gb|EFH07467.1| rRNA methylase [Clostridium difficile NAP08] gi|296429870|gb|EFH15722.1| rRNA methylase [Clostridium difficile NAP07] Length = 192 Score = 52.1 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 6/85 (7%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETMRD--YKEQFSLF 88 G +++DAT G G +R + V A D A+ ++ + Y ++ L Sbjct: 22 INEGDIVIDATMGNGYDTRYLAEKVGEKGFVYAFDIQEEAIKSTRKKLEKEGYTDRVKLI 81 Query: 89 QATFSQLQDYVPDKGVDGVVFDLGV 113 ++ Y+ ++ V V+F+LG Sbjct: 82 FDGHEKMNQYIKEE-VSCVLFNLGY 105 >gi|325263526|ref|ZP_08130260.1| putative rRNA methylase [Clostridium sp. D5] gi|324031235|gb|EGB92516.1| putative rRNA methylase [Clostridium sp. D5] Length = 188 Score = 51.7 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 6/85 (7%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRD--YKEQFSLF 88 PG V +DAT G G + C++ V A D A++ E + + + L Sbjct: 19 IEPGDVCVDATAGNGNDTEFLCRLAGSTGKVYAFDIQQEALAHTAERIEKLGFGSRARLI 78 Query: 89 QATFSQLQDYVPDKGVDGVVFDLGV 113 Q ++ +YV + V +VF+ G Sbjct: 79 QDGHEKMGEYVKE-DVSAIVFNFGY 102 >gi|295103806|emb|CBL01350.1| Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Faecalibacterium prausnitzii SL3/3] Length = 288 Score = 51.7 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 6/79 (7%) Query: 41 LDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQ 94 +DAT G GG + C + V+A D P A+ + + +++SL + + Sbjct: 125 VDATCGNGGDTAFLCNLTAPAGRVLAFDVQPEAIRSTRTRLEQANVPADRYSLVCGSHAD 184 Query: 95 LQDYVPDKGVDGVVFDLGV 113 L YV D V+F+ G Sbjct: 185 LLQYVQPGTADAVMFNFGW 203 >gi|309389271|gb|ADO77151.1| rRNA methylase [Halanaerobium praevalens DSM 2228] Length = 190 Score = 51.3 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 6/86 (6%) Query: 33 NPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSL 87 N G +++DAT G G ++ K V A D A+ + ++++ E+ L Sbjct: 20 NIDEGDLVIDATAGNGYDTKFLAELVKKKGKVYAFDLQAKAIENTNKLLKEHNLLERVEL 79 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGV 113 FQ L Y+ +K + V+F+LG Sbjct: 80 FQTGHQNLDQYL-NKKIKAVIFNLGY 104 >gi|157130292|ref|XP_001661874.1| prip interacting protein. pimt [Aedes aegypti] gi|108871934|gb|EAT36159.1| prip interacting protein. pimt [Aedes aegypti] Length = 526 Score = 51.3 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 44/115 (38%), Gaps = 14/115 (12%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96 +I+DA G GG S F VIA+D DP + + Y ++ F QL Sbjct: 370 LIVDAFCGCGGNSIQFAFTCQKVIAIDIDPKKIEMAKHNAAVYGVADRIEFITGNFLQLA 429 Query: 97 DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQA 151 D + D+ S S+ K D+ S + A++++ +A Sbjct: 430 DKLR--------ADVIFLSPPWGGP----SYLKDEVYDLETSLIPVPATELMRKA 472 >gi|13537283|dbj|BAB40630.1| hypothetical protein [Vibrio campbellii] Length = 29 Score = 50.9 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 8/27 (29%), Positives = 12/27 (44%) Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILD 42 H+ VLL + I L P + +D Sbjct: 3 ETFQHISVLLNESIDGLAIKPDGIYID 29 >gi|239828101|ref|YP_002950725.1| rRNA methylase [Geobacillus sp. WCH70] gi|239808394|gb|ACS25459.1| putative rRNA methylase [Geobacillus sp. WCH70] Length = 191 Score = 50.9 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 10/91 (10%) Query: 32 LNPAPGKVILDATFGAGGY-SRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK--EQF 85 L G +++DAT G G+ + + +V D A++ ++++ + Sbjct: 16 LAVNEGDIVVDATVGN-GHDTLYLAQRVGESGHVFGFDIQKEAIAKTSARLQEHNMLNRV 74 Query: 86 SLFQATFSQLQDYVPDK---GVDGVVFDLGV 113 +LFQA+ QL + +P + G +F+LG Sbjct: 75 TLFQASHDQLIEKIPSIYHGRITGAMFNLGY 105 >gi|301609194|ref|XP_002934152.1| PREDICTED: trimethylguanosine synthase-like [Xenopus (Silurana) tropicalis] Length = 845 Score = 50.9 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 2/69 (2%) Query: 38 KVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQL 95 V++DA G GG + F K G+ VIA+D DP + + Y ++ + F L Sbjct: 689 GVVVDAFCGVGGNAIQFAKAGNRVIAVDIDPVKLDFARNNAEVYGVTDRIEFIRGDFMLL 748 Query: 96 QDYVPDKGV 104 + V Sbjct: 749 AQDLKADAV 757 >gi|296133196|ref|YP_003640443.1| putative rRNA methylase [Thermincola sp. JR] gi|296031774|gb|ADG82542.1| putative rRNA methylase [Thermincola potens JR] Length = 189 Score = 50.9 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 33/86 (38%), Gaps = 6/86 (6%) Query: 33 NPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK--EQFSL 87 PG ++DAT G G + + V D A+ + + E+ L Sbjct: 19 KIGPGATVIDATVGNGYDTLFLAEAVGVVGRVYGFDIQAEAIENTKLRLLKEGLLERVLL 78 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGV 113 F L V + +DG++F+LG Sbjct: 79 FHEGHENLAHRVTE-NIDGIMFNLGY 103 >gi|262172810|ref|ZP_06040488.1| ribosomal RNA small subunit methyltransferase B [Vibrio mimicus MB-451] gi|261893886|gb|EEY39872.1| ribosomal RNA small subunit methyltransferase B [Vibrio mimicus MB-451] Length = 426 Score = 50.9 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQF 85 + L P G++ILD GG + + + V+A+D D + QE ++ K Sbjct: 235 ALTYLAPKAGELILDCCAAPGGKTAHILERTPDSQVVAIDCDETRLKRVQENLQRLKLNA 294 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + QD+ + D ++ D S Sbjct: 295 QVICGDARYPQDWWQGEQFDRILLDAPCS 323 >gi|258622988|ref|ZP_05718003.1| sun protein [Vibrio mimicus VM573] gi|258584771|gb|EEW09505.1| sun protein [Vibrio mimicus VM573] Length = 438 Score = 50.9 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQF 85 + L P G++ILD GG + + + V+A+D D + QE ++ K Sbjct: 247 ALTYLAPKAGELILDCCAAPGGKTAHILERTPDSQVVAIDCDETRLKRVQENLQRLKLNA 306 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + QD+ + D ++ D S Sbjct: 307 QVICGDARYPQDWWQGEQFDRILLDAPCS 335 >gi|258626112|ref|ZP_05720963.1| sun protein [Vibrio mimicus VM603] gi|258581638|gb|EEW06536.1| sun protein [Vibrio mimicus VM603] Length = 438 Score = 50.9 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQF 85 + L P G++ILD GG + + + V+A+D D + QE ++ K Sbjct: 247 ALTYLAPKAGELILDCCAAPGGKTAHILERTPDSQVVAIDCDETRLKRVQENLQRLKLNA 306 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + QD+ + D ++ D S Sbjct: 307 QVICGDARYPQDWWQGEQFDRILLDAPCS 335 >gi|212638269|ref|YP_002314789.1| SAM-dependent methyltransferase [Anoxybacillus flavithermus WK1] gi|212559749|gb|ACJ32804.1| SAM-dependent methyltransferase [Anoxybacillus flavithermus WK1] Length = 191 Score = 50.9 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 42/91 (46%), Gaps = 10/91 (10%) Query: 32 LNPAPGKVILDATFGAGGY-SRSFCKM---GSNVIALDRDPFAVSCGQETMRDY--KEQF 85 L G +++DAT G G+ + + +V D A+ + + ++ + + Sbjct: 17 LAVKEGDIVVDATIGN-GHDTLYLAERVGQSGHVFGFDIQAQAIENTTKRLHEHHMETRV 75 Query: 86 SLFQATFSQLQDYVP---DKGVDGVVFDLGV 113 +L QA+ +++ ++P + G +F+LG Sbjct: 76 TLVQASHAEIDAHIPPEYKGRITGAMFNLGY 106 >gi|118468434|ref|YP_887597.1| methyltransferase [Mycobacterium smegmatis str. MC2 155] gi|118169721|gb|ABK70617.1| methyltransferase [Mycobacterium smegmatis str. MC2 155] Length = 243 Score = 50.6 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 4/84 (4%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSL 87 +AL+ G+ ILDA G G Y+ K G+++I D+ P V + + + Sbjct: 36 CLALIGDVAGRTILDAACGPGLYAEELAKRGASLIGFDQSPRMVELARARVPSGDFRVHD 95 Query: 88 FQATFSQLQDYVPDKGVDGVVFDL 111 D++P + VD V+ L Sbjct: 96 LAGP----LDWLPSQSVDAVLLAL 115 >gi|189426228|ref|YP_001953405.1| rRNA methylase [Geobacter lovleyi SZ] gi|189422487|gb|ACD96885.1| putative rRNA methylase [Geobacter lovleyi SZ] Length = 200 Score = 50.6 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 12/111 (10%) Query: 13 IHHTIGDHVPVLLEKV-IALLN----PAPGKVILDATFGAGGYSRSFCKM---GSNVIAL 64 + T H PVL V ++ L G ++DAT G G + ++ +V A Sbjct: 1 MPSTKAPH-PVLRGPVPLSHLLLQRFIQSGSRVIDATCGNGKDTLLLAELVGETGHVWAF 59 Query: 65 DRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 D A+ + + + ++ SL A +L + V + GVVF+LG Sbjct: 60 DIQQEALDRTAQRLAEQNLQQRVSLLHAGHERLLELVK-PPLHGVVFNLGW 109 >gi|295110324|emb|CBL24277.1| Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Ruminococcus obeum A2-162] Length = 187 Score = 50.6 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 5/86 (5%) Query: 33 NPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPFAVSCGQETM--RDYKEQFSL 87 PG + +DAT G G + C + +V A D A++ ++ + D ++L Sbjct: 17 QVQPGDICIDATMGNGNDTLLLCSLCQETGHVYAFDIQEQALAHTRQKLQNADVPTNYTL 76 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGV 113 + + + YV V +VF+LG Sbjct: 77 LLESHANMDHYVQPDSVSCIVFNLGY 102 >gi|15615847|ref|NP_244151.1| hypothetical protein BH3285 [Bacillus halodurans C-125] gi|10175908|dbj|BAB07004.1| BH3285 [Bacillus halodurans C-125] Length = 190 Score = 50.6 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 42/99 (42%), Gaps = 15/99 (15%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMR 79 LL+ V+ PG + +D T G G+ F +V D A+ + ++ Sbjct: 13 LLQNVL-----TPGSIAVDGTTGN-GHDTVFLAKLVGETGHVYGFDVQEQAIHQTNKRVK 66 Query: 80 D--YKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGV 113 + + E+ +LF A+ Q+ +P + +F+LG Sbjct: 67 ELGFPERVTLFHASHEQVATLIPPDQHPNIKAAIFNLGY 105 >gi|293563986|ref|ZP_06678393.1| methyltransferase [Enterococcus faecium E1162] gi|291604076|gb|EFF33603.1| methyltransferase [Enterococcus faecium E1162] Length = 189 Score = 50.6 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 15/101 (14%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQ 75 H LL++++ PG ++DAT G G+ F +V + D A+ + Sbjct: 10 HT--LLQEIL-----QPGDHVVDATMGN-GHDTVFLAEHIGKTGHVYSFDIQQQAIDATR 61 Query: 76 ETM--RDYKEQFSLFQATFSQLQDYVPD-KGVDGVVFDLGV 113 E + R +E+ SLF L + + + + + +F+LG Sbjct: 62 ERLEQRQLEERVSLFLQGHETLGEVIAEQQNLKAGIFNLGY 102 >gi|258614091|ref|ZP_05711861.1| hypothetical protein EfaeD_00112 [Enterococcus faecium DO] Length = 187 Score = 50.6 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 15/101 (14%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQ 75 H LL++++ PG ++DAT G G+ F +V + D A+ + Sbjct: 10 HT--LLQEIL-----QPGDHVVDATMGN-GHDTVFLAEHIGKTGHVYSFDIQQQAIDATR 61 Query: 76 ETM--RDYKEQFSLFQATFSQLQDYVPD-KGVDGVVFDLGV 113 E + R +E+ SLF L + + + + + +F+LG Sbjct: 62 ERLEQRQLEERVSLFLQGHETLGEVIAEQQNLKAGIFNLGY 102 >gi|257877004|ref|ZP_05656657.1| SAM-dependent methyltransferase [Enterococcus casseliflavus EC20] gi|257811170|gb|EEV39990.1| SAM-dependent methyltransferase [Enterococcus casseliflavus EC20] Length = 187 Score = 50.6 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 39/99 (39%), Gaps = 13/99 (13%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H LL++V+ PG+ +DAT G G + + V A D A+ ++ Sbjct: 5 HT--LLKEVL-----QPGQTAVDATMGNGFDTELLASLVGPTGQVFAFDIQEQALQATKK 57 Query: 77 TMRDYK--EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + + + Q L L + V V +F+LG Sbjct: 58 RLAEKELLAQVQLIHQGHETLAEVVSGP-VHAAIFNLGY 95 >gi|160943569|ref|ZP_02090802.1| hypothetical protein FAEPRAM212_01062 [Faecalibacterium prausnitzii M21/2] gi|158445248|gb|EDP22251.1| hypothetical protein FAEPRAM212_01062 [Faecalibacterium prausnitzii M21/2] Length = 328 Score = 50.6 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 6/79 (7%) Query: 41 LDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQ 94 +DAT G GG + C + V+A D P A+ + + E++ L + + Sbjct: 165 VDATCGNGGDTAFLCGLTAPAGRVLAFDVQPEAIRSTRARLEKANVPAERYELICGSHAD 224 Query: 95 LQDYVPDKGVDGVVFDLGV 113 L YV D V+F+ G Sbjct: 225 LLQYVQPGTADAVMFNFGW 243 >gi|330904805|gb|EGH35377.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv. japonica str. M301072PT] Length = 48 Score = 50.2 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 4/49 (8%) Query: 48 GGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFS 93 GG+SR ++ D+DP A++ GQ + +F + Q F+ Sbjct: 1 GGHSRLILSQLGPDGRLLGFDKDPQAIATGQA-LAAEDGRFVIVQRIFA 48 >gi|257880445|ref|ZP_05660098.1| conserved hypothetical protein [Enterococcus faecium 1,230,933] gi|257883258|ref|ZP_05662911.1| conserved hypothetical protein [Enterococcus faecium 1,231,502] gi|257886333|ref|ZP_05665986.1| conserved hypothetical protein [Enterococcus faecium 1,231,501] gi|257891525|ref|ZP_05671178.1| conserved hypothetical protein [Enterococcus faecium 1,231,410] gi|257894534|ref|ZP_05674187.1| conserved hypothetical protein [Enterococcus faecium 1,231,408] gi|257814673|gb|EEV43431.1| conserved hypothetical protein [Enterococcus faecium 1,230,933] gi|257818916|gb|EEV46244.1| conserved hypothetical protein [Enterococcus faecium 1,231,502] gi|257822189|gb|EEV49319.1| conserved hypothetical protein [Enterococcus faecium 1,231,501] gi|257827885|gb|EEV54511.1| conserved hypothetical protein [Enterococcus faecium 1,231,410] gi|257830913|gb|EEV57520.1| conserved hypothetical protein [Enterococcus faecium 1,231,408] Length = 189 Score = 50.2 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 15/101 (14%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQ 75 H LL++++ PG ++DAT G G+ F +V + D A+ + Sbjct: 11 HT--LLQEIL-----QPGDHVVDATMGN-GHDTVFLAEHIGKTGHVYSFDIQQQAIDATR 62 Query: 76 ETM--RDYKEQFSLFQATFSQLQDYVPD-KGVDGVVFDLGV 113 E + R +E+ SLF L + + + + + +F+LG Sbjct: 63 ERLEQRQLEERVSLFLQGHETLGEVIAEQQNLKAGIFNLGY 103 >gi|69244085|ref|ZP_00602621.1| Putative rRNA methylase [Enterococcus faecium DO] gi|260562444|ref|ZP_05832954.1| conserved hypothetical protein [Enterococcus faecium C68] gi|261206890|ref|ZP_05921580.1| conserved hypothetical protein [Enterococcus faecium TC 6] gi|289567067|ref|ZP_06447464.1| conserved hypothetical protein [Enterococcus faecium D344SRF] gi|293569441|ref|ZP_06680737.1| methyltransferase [Enterococcus faecium E1071] gi|294613891|ref|ZP_06693829.1| methyltransferase [Enterococcus faecium E1636] gi|294619127|ref|ZP_06698619.1| methyltransferase [Enterococcus faecium E1679] gi|294622187|ref|ZP_06701252.1| methyltransferase [Enterococcus faecium U0317] gi|314943338|ref|ZP_07850113.1| rRNA methylase family protein [Enterococcus faecium TX0133C] gi|314949262|ref|ZP_07852608.1| rRNA methylase family protein [Enterococcus faecium TX0082] gi|314953920|ref|ZP_07856778.1| rRNA methylase family protein [Enterococcus faecium TX0133A] gi|314993190|ref|ZP_07858571.1| rRNA methylase family protein [Enterococcus faecium TX0133B] gi|314997352|ref|ZP_07862309.1| rRNA methylase family protein [Enterococcus faecium TX0133a01] gi|68196542|gb|EAN10968.1| Putative rRNA methylase [Enterococcus faecium DO] gi|260073129|gb|EEW61474.1| conserved hypothetical protein [Enterococcus faecium C68] gi|260078868|gb|EEW66569.1| conserved hypothetical protein [Enterococcus faecium TC 6] gi|289161146|gb|EFD09049.1| conserved hypothetical protein [Enterococcus faecium D344SRF] gi|291587861|gb|EFF19713.1| methyltransferase [Enterococcus faecium E1071] gi|291593256|gb|EFF24827.1| methyltransferase [Enterococcus faecium E1636] gi|291594613|gb|EFF25998.1| methyltransferase [Enterococcus faecium E1679] gi|291598284|gb|EFF29376.1| methyltransferase [Enterococcus faecium U0317] gi|313588566|gb|EFR67411.1| rRNA methylase family protein [Enterococcus faecium TX0133a01] gi|313592304|gb|EFR71149.1| rRNA methylase family protein [Enterococcus faecium TX0133B] gi|313594119|gb|EFR72964.1| rRNA methylase family protein [Enterococcus faecium TX0133A] gi|313597950|gb|EFR76795.1| rRNA methylase family protein [Enterococcus faecium TX0133C] gi|313644361|gb|EFS08941.1| rRNA methylase family protein [Enterococcus faecium TX0082] Length = 188 Score = 50.2 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 15/101 (14%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQ 75 H LL++++ PG ++DAT G G+ F +V + D A+ + Sbjct: 10 HT--LLQEIL-----QPGDHVVDATMGN-GHDTVFLAEHIGKTGHVYSFDIQQQAIDATR 61 Query: 76 ETM--RDYKEQFSLFQATFSQLQDYVPD-KGVDGVVFDLGV 113 E + R +E+ SLF L + + + + + +F+LG Sbjct: 62 ERLEQRQLEERVSLFLQGHETLGEVIAEQQNLKAGIFNLGY 102 >gi|86159623|ref|YP_466408.1| type 12 methyltransferase [Anaeromyxobacter dehalogenans 2CP-C] gi|85776134|gb|ABC82971.1| Methyltransferase type 12 [Anaeromyxobacter dehalogenans 2CP-C] Length = 198 Score = 50.2 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 2/99 (2%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84 L ++ L P LD G G ++ G V +D P A++ ++ D Sbjct: 25 LSALVEGLRARPPGRALDLGCGRGAHAVYLASHGWKVTGVDLVPAALAKARQRATDAGVD 84 Query: 85 FSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDR 123 ++L G D ++ D G + +R Sbjct: 85 VQFLDGDVTRLDTLGLSPGYD-LLLDAGC-FHGLSDPER 121 >gi|297528996|ref|YP_003670271.1| rRNA methylase [Geobacillus sp. C56-T3] gi|297252248|gb|ADI25694.1| putative rRNA methylase [Geobacillus sp. C56-T3] Length = 195 Score = 50.2 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 45/99 (45%), Gaps = 15/99 (15%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGY-SRSFCKM---GSNVIALDRDPFAVSCGQETMR 79 LL++ + G + +DAT G G+ + + +V D P A++ + Sbjct: 13 LLDQAVN-----EGDIAVDATVGN-GHDTVYLAERVGETGHVFGFDIQPEAITAASARLA 66 Query: 80 DYK--EQFSLFQATFSQLQDYVPDK---GVDGVVFDLGV 113 ++ + +LF+ + S+L + +P + G VF+LG Sbjct: 67 EHGLCGRATLFERSHSELLEALPADVHGRIAGAVFNLGY 105 >gi|261418138|ref|YP_003251820.1| rRNA methylase [Geobacillus sp. Y412MC61] gi|319767902|ref|YP_004133403.1| rRNA methylase [Geobacillus sp. Y412MC52] gi|261374595|gb|ACX77338.1| putative rRNA methylase [Geobacillus sp. Y412MC61] gi|317112768|gb|ADU95260.1| rRNA methylase [Geobacillus sp. Y412MC52] Length = 195 Score = 50.2 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 45/99 (45%), Gaps = 15/99 (15%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGY-SRSFCKM---GSNVIALDRDPFAVSCGQETMR 79 LL++ + G + +DAT G G+ + + +V D P A++ + Sbjct: 13 LLDQAVN-----EGDIAVDATVGN-GHDTVYLAERVGETGHVFGFDIQPEAITAASARLA 66 Query: 80 DYK--EQFSLFQATFSQLQDYVPDK---GVDGVVFDLGV 113 ++ + +LF+ + S+L + +P + G VF+LG Sbjct: 67 EHGLCGRATLFERSHSELLEALPADVHGRIAGAVFNLGY 105 >gi|314940365|ref|ZP_07847527.1| rRNA methylase family protein [Enterococcus faecium TX0133a04] gi|313640405|gb|EFS04985.1| rRNA methylase family protein [Enterococcus faecium TX0133a04] Length = 196 Score = 49.8 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 15/101 (14%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQ 75 H LL++++ PG ++DAT G G+ F +V + D A+ + Sbjct: 10 HT--LLQEIL-----QPGDHVVDATMGN-GHDTVFLAEHIGKTGHVYSFDIQQQAIDATR 61 Query: 76 ETM--RDYKEQFSLFQATFSQLQDYVPD-KGVDGVVFDLGV 113 E + R +E+ SLF L + + + + + +F+LG Sbjct: 62 ERLEQRQLEERVSLFLQGHETLGEVIAEQQNLKAGIFNLGY 102 >gi|54295215|ref|YP_127630.1| hypothetical protein lpl2298 [Legionella pneumophila str. Lens] gi|53755047|emb|CAH16538.1| hypothetical protein lpl2298 [Legionella pneumophila str. Lens] Length = 212 Score = 49.8 bits (118), Expect = 6e-04, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 40/102 (39%), Gaps = 12/102 (11%) Query: 15 HTIGDHVPVLLEKVI----ALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFA 70 + G H V+ E+ L N K+++D G GG + + + G VIA++ D Sbjct: 34 DSEGLH-TVMPEEATLTQAKLFN--NAKIVVDGFCGIGGSAIALARTGKKVIAIEMDSVR 90 Query: 71 VSCGQETMRDYK--EQFSLFQATFSQLQDYVPDKGVDGVVFD 110 ++ + R Y + F D + D V+ D Sbjct: 91 LAMAKNNARVYGVEHLITFVHGDFF---DVAAEIKADAVLID 129 >gi|295317811|gb|ADF98188.1| conserved hypothetical protein [Clostridium botulinum F str. 230613] Length = 188 Score = 49.8 bits (118), Expect = 6e-04, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 35/82 (42%), Gaps = 7/82 (8%) Query: 37 GKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQAT 91 G +++D T G G+ VI+ D A++ +E +R++ + +L Sbjct: 24 GDIVVDCTLGK-GHDTILLANLVGNKGKVISFDIQKEAINKTKEKLREFDYKNITLINDG 82 Query: 92 FSQLQDYVPDKGVDGVVFDLGV 113 L ++ + V +F+LG Sbjct: 83 HENLDRHIQE-KVKLFIFNLGY 103 >gi|293553710|ref|ZP_06674333.1| methyltransferase [Enterococcus faecium E1039] gi|291602136|gb|EFF32365.1| methyltransferase [Enterococcus faecium E1039] Length = 173 Score = 49.8 bits (118), Expect = 6e-04, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 15/101 (14%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQ 75 H LL++++ PG ++DAT G G+ F +V + D A+ + Sbjct: 10 HT--LLQEIL-----QPGDHVVDATMGN-GHDTVFLAEHIGKTGHVYSFDIQQQAIDATR 61 Query: 76 ETM--RDYKEQFSLFQATFSQLQDYVPD-KGVDGVVFDLGV 113 E + R +E+ SLF L + + + + + +F+LG Sbjct: 62 ERLEQRQLEERVSLFLQGHETLGEVIAEQQNLKAGIFNLGY 102 >gi|153939332|ref|YP_001389723.1| hypothetical protein CLI_0427 [Clostridium botulinum F str. Langeland] gi|170757483|ref|YP_001780008.1| hypothetical protein CLD_0396 [Clostridium botulinum B1 str. Okra] gi|152935228|gb|ABS40726.1| conserved hypothetical protein [Clostridium botulinum F str. Langeland] gi|169122695|gb|ACA46531.1| conserved hypothetical protein [Clostridium botulinum B1 str. Okra] Length = 188 Score = 49.8 bits (118), Expect = 6e-04, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 35/82 (42%), Gaps = 7/82 (8%) Query: 37 GKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQAT 91 G +++D T G G+ VI+ D A++ +E +R++ + +L Sbjct: 24 GDIVVDCTLGK-GHDTILLANLVGNKGKVISFDIQKEAINKTKEKLREFDYKNITLINDG 82 Query: 92 FSQLQDYVPDKGVDGVVFDLGV 113 L ++ + V +F+LG Sbjct: 83 HENLDRHIQE-KVKLFIFNLGY 103 >gi|154687178|ref|YP_001422339.1| YtqB [Bacillus amyloliquefaciens FZB42] gi|154353029|gb|ABS75108.1| YtqB [Bacillus amyloliquefaciens FZB42] Length = 193 Score = 49.8 bits (118), Expect = 6e-04, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 9/87 (10%) Query: 35 APGKVILDATFGAGGYSRSFCK----MGSNVIALDRDPFAVSCGQETM-RDYKEQFSLFQ 89 G + +DAT G G+ F +V A D A++ +E + D+ + +L Sbjct: 19 QEGDITVDATMGN-GHDTYFLAGLVGETGHVHAFDIQADALAKTKERLGADFSPRVTLHH 77 Query: 90 ATFSQLQDYVPDKG---VDGVVFDLGV 113 + Q++ +P+ V VF+LG Sbjct: 78 KSHDQIKASLPEDAHGRVACAVFNLGY 104 >gi|39995796|ref|NP_951747.1| hypothetical protein GSU0690 [Geobacter sulfurreducens PCA] gi|39982560|gb|AAR34020.1| conserved hypothetical protein [Geobacter sulfurreducens PCA] gi|298504804|gb|ADI83527.1| rRNA methyltransferase, putative [Geobacter sulfurreducens KN400] Length = 189 Score = 49.8 bits (118), Expect = 6e-04, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 8/85 (9%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDY--KEQFSL 87 PG ++DAT G G+ F V A D A++ + + E+ L Sbjct: 20 VKPGDRVVDATCGN-GHDTLFLAELVGPEGRVWAFDIQDAALAATAKRLEAAGCGERVEL 78 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLG 112 +L + VP V VVF+LG Sbjct: 79 VNGGHERLAELVPGP-VTAVVFNLG 102 >gi|167759369|ref|ZP_02431496.1| hypothetical protein CLOSCI_01716 [Clostridium scindens ATCC 35704] gi|167662926|gb|EDS07056.1| hypothetical protein CLOSCI_01716 [Clostridium scindens ATCC 35704] Length = 187 Score = 49.8 bits (118), Expect = 6e-04, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 9/101 (8%) Query: 26 EKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETMRDYK 82 ++I A G +DAT G G + C + V+A D A+ Q +++ Sbjct: 11 HEIIRSQA-AAGGFYIDATMGNGKDTLMLCTLAGKAGSVLAFDIQDTALQATQRLLKEQG 69 Query: 83 --EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVS---SMQI 118 E+ SL + + Y + D + F+ G S I Sbjct: 70 CLERASLIKDGHEHMDLYAGEGTADVICFNFGYLPGGSHHI 110 >gi|332193122|gb|AEE31243.1| S-adenosyl-L-methionine-dependent methyltransferase domain-containing protein [Arabidopsis thaliana] Length = 221 Score = 49.8 bits (118), Expect = 6e-04, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 44/109 (40%), Gaps = 12/109 (11%) Query: 37 GKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQ 94 GKV++D G GG + F K+ S+VIA+D DP ++ + Y + F Q Sbjct: 62 GKVVIDCFSGVGGNTIQFAKVCSSVIAIDIDPMKIALAMNNAKVYGVANRIDFVTGDFMQ 121 Query: 95 LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGIS 143 L + D+ S +S +S LDM + G S Sbjct: 122 LAPSLK--------GDVLFLSPPWGGP--TYSKVESYKLDMLLPRDGYS 160 >gi|238478691|ref|NP_001154386.1| unknown protein [Arabidopsis thaliana] Length = 239 Score = 49.8 bits (118), Expect = 6e-04, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 44/109 (40%), Gaps = 12/109 (11%) Query: 37 GKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQ 94 GKV++D G GG + F K+ S+VIA+D DP ++ + Y + F Q Sbjct: 80 GKVVIDCFSGVGGNTIQFAKVCSSVIAIDIDPMKIALAMNNAKVYGVANRIDFVTGDFMQ 139 Query: 95 LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGIS 143 L + D+ S +S +S LDM + G S Sbjct: 140 LAPSLK--------GDVLFLSPPWGGP--TYSKVESYKLDMLLPRDGYS 178 >gi|149181473|ref|ZP_01859969.1| SAM-dependent methyltransferase, MraW methylase family protein [Bacillus sp. SG-1] gi|148850874|gb|EDL65028.1| SAM-dependent methyltransferase, MraW methylase family protein [Bacillus sp. SG-1] Length = 190 Score = 49.8 bits (118), Expect = 6e-04, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 10/90 (11%) Query: 33 NPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMR--DYKEQFS 86 PG + +DAT G G+ F V D A+ +E ++ + +E+ + Sbjct: 17 AVNPGDIAIDATLGN-GHDTLFLAQLVGENGRVYGFDIQEEALFNTRERLQTHNLQERVT 75 Query: 87 LFQATFSQLQDYVP---DKGVDGVVFDLGV 113 LF+ + + VP V G +F+LG Sbjct: 76 LFKQGHETVGNVVPPVHYGKVTGAIFNLGY 105 >gi|307611227|emb|CBX00878.1| hypothetical protein LPW_25811 [Legionella pneumophila 130b] Length = 212 Score = 49.8 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 12/102 (11%) Query: 15 HTIGDHVPVLLEKVIALLNPAP----GKVILDATFGAGGYSRSFCKMGSNVIALDRDPFA 70 + G H V+ E+ A L A K+++D G GG + + + G VIA++ D Sbjct: 34 DSEGLH-TVMPEE--AALTQAKLFNNAKIVVDGFCGIGGSAIALARTGKKVIAIEMDSVR 90 Query: 71 VSCGQETMRDYK--EQFSLFQATFSQLQDYVPDKGVDGVVFD 110 ++ + R Y + F D + D V+ D Sbjct: 91 LAMAKNNARVYGVEHLITFVHGDFF---DVAAEIKADAVLID 129 >gi|325568219|ref|ZP_08144627.1| rRNA methylase [Enterococcus casseliflavus ATCC 12755] gi|325158252|gb|EGC70404.1| rRNA methylase [Enterococcus casseliflavus ATCC 12755] Length = 192 Score = 49.4 bits (117), Expect = 7e-04, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 38/99 (38%), Gaps = 13/99 (13%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76 H LL++V+ PG +DAT G G + + V A D A+ ++ Sbjct: 10 HT--LLKEVV-----QPGHTAVDATMGNGFDTELLASLVGPTGQVFAFDIQEQALQATKK 62 Query: 77 TM--RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + ++ Q L L D V V +F+LG Sbjct: 63 RLTEKELLPQVQLIHQGHETLADVVSGP-VHAAIFNLGY 100 >gi|52081533|ref|YP_080324.1| hypothetical protein BL00061 [Bacillus licheniformis ATCC 14580] gi|319647443|ref|ZP_08001664.1| YtqB protein [Bacillus sp. BT1B_CT2] gi|52004744|gb|AAU24686.1| conserved protein YtqB [Bacillus licheniformis ATCC 14580] gi|317390489|gb|EFV71295.1| YtqB protein [Bacillus sp. BT1B_CT2] Length = 194 Score = 49.4 bits (117), Expect = 7e-04, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 9/86 (10%) Query: 36 PGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMR-DYKEQFSLFQA 90 G +++DAT G G+ F +V A D A+ E + +YK++ +L Q Sbjct: 20 EGDIVIDATMGN-GHDTHFLAELVGESGHVYAFDIQEAALMNTAERLGNEYKDRVTLIQK 78 Query: 91 TFSQLQDYVPDK---GVDGVVFDLGV 113 + +L +PD V VF+LG Sbjct: 79 SHDELTTSLPDDISGKVAAAVFNLGY 104 >gi|16080101|ref|NP_390927.1| RNA methylase [Bacillus subtilis subsp. subtilis str. 168] gi|221310989|ref|ZP_03592836.1| hypothetical protein Bsubs1_16601 [Bacillus subtilis subsp. subtilis str. 168] gi|221315316|ref|ZP_03597121.1| hypothetical protein BsubsN3_16507 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320233|ref|ZP_03601527.1| hypothetical protein BsubsJ_16428 [Bacillus subtilis subsp. subtilis str. JH642] gi|221324515|ref|ZP_03605809.1| hypothetical protein BsubsS_16577 [Bacillus subtilis subsp. subtilis str. SMY] gi|81815732|sp|O34614|YTQB_BACSU RecName: Full=Putative rRNA methylase ytqB gi|2293301|gb|AAC00379.1| YtqB [Bacillus subtilis] gi|2635533|emb|CAB15027.1| putative RNA methylase [Bacillus subtilis subsp. subtilis str. 168] Length = 194 Score = 49.4 bits (117), Expect = 8e-04, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 9/86 (10%) Query: 36 PGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRD-YKEQFSLFQA 90 G +++DAT G G+ F +V A D AV+ +E + D Y+ + +LF Sbjct: 20 EGDIVVDATMGN-GHDTQFLAELVGENGHVYAFDIQESAVANTKERLGDMYQARTTLFHK 78 Query: 91 TFSQLQDYVP---DKGVDGVVFDLGV 113 + ++ + +P V VF+LG Sbjct: 79 SHDKIAESLPPETHGKVAAAVFNLGY 104 >gi|291485487|dbj|BAI86562.1| hypothetical protein BSNT_04441 [Bacillus subtilis subsp. natto BEST195] Length = 194 Score = 49.4 bits (117), Expect = 8e-04, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 9/86 (10%) Query: 36 PGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRD-YKEQFSLFQA 90 G +++DAT G G+ F +V A D AV+ +E + D Y+ + +LF Sbjct: 20 EGDIVVDATMGN-GHDTQFLAELVGENGHVYAFDIQESAVANTKERLGDMYQARTTLFHK 78 Query: 91 TFSQLQDYVP---DKGVDGVVFDLGV 113 + ++ + +P V VF+LG Sbjct: 79 SHDKIAESLPPETHGKVAAAVFNLGY 104 >gi|323493837|ref|ZP_08098955.1| 16S rRNA methyltransferase B [Vibrio brasiliensis LMG 20546] gi|323311971|gb|EGA65117.1| 16S rRNA methyltransferase B [Vibrio brasiliensis LMG 20546] Length = 426 Score = 49.4 bits (117), Expect = 8e-04, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85 I L P G++ILD GG + + GS V+A+D D + + ++ + Sbjct: 235 SINYLTPQDGELILDCCAAPGGKTAHILERTQGSEVVAIDCDDTRLKRVHDNLQRLNLKA 294 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + QD+ + D ++ D S Sbjct: 295 KVICGDARNPQDWWQGEQFDRILLDAPCS 323 >gi|222056740|ref|YP_002539102.1| rRNA methylase [Geobacter sp. FRC-32] gi|221566029|gb|ACM22001.1| putative rRNA methylase [Geobacter sp. FRC-32] Length = 228 Score = 49.4 bits (117), Expect = 9e-04, Method: Composition-based stats. Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 8/86 (9%) Query: 34 PAPGKVILDATFGAGGYSRSFC----KMGSNVIALDRDPFAVSCGQETMRDYK--EQFSL 87 PG ++DAT G G+ F + V A D A+ + + + K ++ L Sbjct: 60 VKPGDRVVDATCGN-GHDTLFLAGLVEAEGAVFAFDVQEQALEKTRLLLEENKCLDRVQL 118 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGV 113 F A +L YVPD V V F+LG Sbjct: 119 FHAGHQELAAYVPDP-VQAVAFNLGY 143 >gi|194017839|ref|ZP_03056448.1| YtqB [Bacillus pumilus ATCC 7061] gi|194010491|gb|EDW20064.1| YtqB [Bacillus pumilus ATCC 7061] Length = 193 Score = 49.0 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 39/95 (41%), Gaps = 9/95 (9%) Query: 26 EKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSN---VIALDRDPFAVSCGQETMRDY 81 ++++ G +++DAT G G+ + + + V A D A+ ++ + + Sbjct: 11 KELLER-ACQKGDIVIDATMGN-GHDTLYLADLVGHDGQVFAFDVQEEAIQQTRKRLGEG 68 Query: 82 KEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGV 113 L +L ++P + G VF+LG Sbjct: 69 YPYVHLIHDGHEKLAQHLPRDVYGHISGAVFNLGY 103 >gi|148269539|ref|YP_001243999.1| hypothetical protein Tpet_0397 [Thermotoga petrophila RKU-1] gi|147735083|gb|ABQ46423.1| hypothetical protein Tpet_0397 [Thermotoga petrophila RKU-1] Length = 254 Score = 49.0 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 52/149 (34%), Gaps = 31/149 (20%) Query: 29 IALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDR----------DPFAVSCG 74 I L P +++LD TFG G S + VI L+ Sbjct: 85 IESLQPEGNEIVLDTTFGLG--SEAILMAAFLPEGKVIGLEGSIHIYTIVKYGMENFETD 142 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + ++D ++ L+ A F + PD D V D + ++ S Sbjct: 143 IQWLKDALKRIELYHANFKEYIRSQPDNSFDVVYCD-----PMFENPV----YESSA--- 190 Query: 135 MRMSCSGISA-SDVVNQANVKDLTRILGI 162 M+ A D VN+ +++++ RI Sbjct: 191 --MNPLRPFAVYDTVNEEDIEEMLRIAKK 217 >gi|89099660|ref|ZP_01172534.1| hypothetical protein B14911_24130 [Bacillus sp. NRRL B-14911] gi|89085603|gb|EAR64730.1| hypothetical protein B14911_24130 [Bacillus sp. NRRL B-14911] Length = 190 Score = 49.0 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 10/90 (11%) Query: 33 NPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK--EQFS 86 +PG +++DAT G G+ + V D A+ + + + E+ + Sbjct: 17 AVSPGDIVVDATLGN-GHDALYLANLVGPNGRVYGFDIQEQAIHNSRIRLSGHGMEERAT 75 Query: 87 LFQATFSQLQDYVP---DKGVDGVVFDLGV 113 LF + QL + +P K + +F+LG Sbjct: 76 LFHSGHEQLLECIPPVHHKKIAAAIFNLGY 105 >gi|295101193|emb|CBK98738.1| Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Faecalibacterium prausnitzii L2-6] Length = 285 Score = 49.0 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 3/76 (3%) Query: 41 LDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD 97 +DAT G GG + C++ V+ D P A++ + + L + + L Sbjct: 125 IDATCGNGGDTAFLCRLAGPEGRVLGFDIQPEAITSTRARLEKQGLTAELICDSHANLLQ 184 Query: 98 YVPDKGVDGVVFDLGV 113 YV D V+F+ G Sbjct: 185 YVRSGTADIVMFNFGW 200 >gi|209693697|ref|YP_002261625.1| ribosomal RNA small subunit methyltransferase B [Aliivibrio salmonicida LFI1238] gi|208007648|emb|CAQ77758.1| ribosomal RNA small subunit methyltransferase B [Aliivibrio salmonicida LFI1238] Length = 444 Score = 49.0 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 36/89 (40%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85 + L P G++ILD GG + + +NV+A+D D ++ E + + Sbjct: 253 SVEYLQPQDGELILDCCAAPGGKTAHILERTKNTNVVAIDCDETRLTRVYENLERLNLEA 312 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + +++ + D ++ D S Sbjct: 313 KVICGDARHPEEWWQGEQFDRILLDAPCS 341 >gi|319651929|ref|ZP_08006052.1| hypothetical protein HMPREF1013_02664 [Bacillus sp. 2_A_57_CT2] gi|317396421|gb|EFV77136.1| hypothetical protein HMPREF1013_02664 [Bacillus sp. 2_A_57_CT2] Length = 190 Score = 49.0 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 10/90 (11%) Query: 33 NPAPGKVILDATFGAGGYSRSFCK----MGSNVIALDRDPFAVSCGQETMRDYK--EQFS 86 +PG +++DAT G G+ F V D AV + + D+ ++ + Sbjct: 17 AVSPGDIVIDATLGN-GHDTVFLADLVGHNGRVYGFDIQEEAVQNTKTRLADHDLSDRAT 75 Query: 87 LFQATFSQLQDYVP---DKGVDGVVFDLGV 113 LF + + VP + +F+LG Sbjct: 76 LFHTGHEFILENVPPVHHGKITAAIFNLGY 105 >gi|293571991|ref|ZP_06683004.1| SAM-dependent methyltransferase [Enterococcus faecium E980] gi|291607915|gb|EFF37224.1| SAM-dependent methyltransferase [Enterococcus faecium E980] Length = 188 Score = 49.0 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 14/89 (15%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQ 75 H LL++++ PG ++DAT G G+ F +V + D A+ + Sbjct: 10 HT--LLQEIL-----QPGDHVVDATMGN-GHDTVFLAEHIGKTGHVYSFDIQQQAIDATR 61 Query: 76 ETMRDY--KEQFSLFQATFSQLQDYVPDK 102 E + + +E+ SLF L + + ++ Sbjct: 62 EKLEQHQLEERVSLFLQGHETLGEVIAEQ 90 >gi|257900323|ref|ZP_05679976.1| conserved hypothetical protein [Enterococcus faecium Com15] gi|257838235|gb|EEV63309.1| conserved hypothetical protein [Enterococcus faecium Com15] Length = 189 Score = 49.0 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 14/89 (15%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQ 75 H LL++++ PG ++DAT G G+ F +V + D A+ + Sbjct: 11 HT--LLQEIL-----QPGDHVVDATMGN-GHDTVFLAEHIGKTGHVYSFDIQQQAIDATR 62 Query: 76 ETMRDY--KEQFSLFQATFSQLQDYVPDK 102 E + + +E+ SLF L + + ++ Sbjct: 63 EKLEQHQLEERVSLFLQGHETLGEVIAEQ 91 >gi|257897586|ref|ZP_05677239.1| rRNA methylase [Enterococcus faecium Com12] gi|257834151|gb|EEV60572.1| rRNA methylase [Enterococcus faecium Com12] Length = 181 Score = 49.0 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 14/89 (15%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQ 75 H LL++++ PG ++DAT G G+ F +V + D A+ + Sbjct: 11 HT--LLQEIL-----QPGDHVVDATMGN-GHDTVFLAEHIGKTGHVYSFDIQQQAIDATR 62 Query: 76 ETMRDY--KEQFSLFQATFSQLQDYVPDK 102 E + + +E+ SLF L + + ++ Sbjct: 63 EKLEQHQLEERVSLFLQGHETLGEVIAEQ 91 >gi|226323861|ref|ZP_03799379.1| hypothetical protein COPCOM_01636 [Coprococcus comes ATCC 27758] gi|225207410|gb|EEG89764.1| hypothetical protein COPCOM_01636 [Coprococcus comes ATCC 27758] Length = 186 Score = 49.0 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 44/100 (44%), Gaps = 14/100 (14%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75 H+ LE+ I G + +DAT G GG + C+ NV A D A++ + Sbjct: 10 HHI---LEEYIE-----EGDICIDATAGNGGDTEFLCQKVGETGNVYAFDVQEMAIAHTR 61 Query: 76 ETM--RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 E + + + L Q ++Q YV ++ ++F+ G Sbjct: 62 ERLEKANLSTRAKLIQDGHEKMQTYVKEE-AKVIIFNFGY 100 >gi|257888992|ref|ZP_05668645.1| conserved hypothetical protein [Enterococcus faecium 1,141,733] gi|257825055|gb|EEV51978.1| conserved hypothetical protein [Enterococcus faecium 1,141,733] Length = 189 Score = 49.0 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 14/89 (15%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQ 75 H LL++++ PG ++DAT G G+ F +V + D A+ + Sbjct: 11 HT--LLQEIL-----QPGDHVVDATMGN-GHDTVFLAEHIGKTGHVYSFDIQQQAIDATR 62 Query: 76 ETMRDY--KEQFSLFQATFSQLQDYVPDK 102 E + + +E+ SLF L + + ++ Sbjct: 63 EKLEQHQLEERVSLFLQGHETLGEVIAEQ 91 >gi|52786912|ref|YP_092741.1| YtqB [Bacillus licheniformis ATCC 14580] gi|52349414|gb|AAU42048.1| YtqB [Bacillus licheniformis ATCC 14580] Length = 225 Score = 49.0 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 9/86 (10%) Query: 36 PGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMR-DYKEQFSLFQA 90 G +++DAT G G+ F +V A D A+ E + +YK++ +L Q Sbjct: 51 EGDIVIDATMGN-GHDTHFLAELVGESGHVYAFDIQEAALMNTAERLGNEYKDRVTLIQK 109 Query: 91 TFSQLQDYVPDK---GVDGVVFDLGV 113 + +L +PD V VF+LG Sbjct: 110 SHDELTTSLPDDISGKVAAAVFNLGY 135 >gi|78224015|ref|YP_385762.1| putative rRNA methylase [Geobacter metallireducens GS-15] gi|78195270|gb|ABB33037.1| putative rRNA methylase [Geobacter metallireducens GS-15] Length = 1128 Score = 48.6 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 8/84 (9%) Query: 35 APGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK--EQFSLF 88 PG +DAT G G+ F V A D A++ +E + + ++ +L Sbjct: 959 RPGDRAVDATCGN-GHDTLFLAQLVGPQGRVWAFDVQAKALAATEERLAEAGCRDRVALV 1017 Query: 89 QATFSQLQDYVPDKGVDGVVFDLG 112 +L + V V VVF+LG Sbjct: 1018 HGGHERLAEVVTGP-VRAVVFNLG 1040 >gi|293377844|ref|ZP_06624028.1| conserved hypothetical protein [Enterococcus faecium PC4.1] gi|292643528|gb|EFF61654.1| conserved hypothetical protein [Enterococcus faecium PC4.1] Length = 188 Score = 48.6 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 14/89 (15%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQ 75 H LL++++ PG ++DAT G G+ F +V + D A+ + Sbjct: 10 HT--LLQEIL-----QPGDHVVDATMGN-GHDTVFLAEHIGKTGHVYSFDIQQQAIDATR 61 Query: 76 ETMRDY--KEQFSLFQATFSQLQDYVPDK 102 E + + +E+ SLF L + + ++ Sbjct: 62 EKLEQHQLEERVSLFLQGHETLGEVIAEQ 90 >gi|227550265|ref|ZP_03980314.1| rRNA methylase [Enterococcus faecium TX1330] gi|227180590|gb|EEI61562.1| rRNA methylase [Enterococcus faecium TX1330] Length = 189 Score = 48.6 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 14/89 (15%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQ 75 H LL++++ PG ++DAT G G+ F +V + D A+ + Sbjct: 10 HT--LLQEIL-----QPGDHVVDATMGN-GHDTVFLAEHIGKTGHVYSFDIQQQAIDATR 61 Query: 76 ETMRDY--KEQFSLFQATFSQLQDYVPDK 102 E + + +E+ SLF L + + ++ Sbjct: 62 EKLEQHQLEERVSLFLQGHETLGEVIAEQ 90 >gi|170039575|ref|XP_001847606.1| prip interacting protein, pimt [Culex quinquefasciatus] gi|167863124|gb|EDS26507.1| prip interacting protein, pimt [Culex quinquefasciatus] Length = 1016 Score = 48.6 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 42/117 (35%), Gaps = 14/117 (11%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96 +++D G GG S + VIA+D DP + + Y ++ F L Sbjct: 860 LVVDGFCGCGGNSIQLAFTCNQVIAIDIDPKKIEMAKHNAAVYGVADRIEFIVGDFLALA 919 Query: 97 DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANV 153 D + D V S S+ K D+ S + A++++ +A Sbjct: 920 DRLQ---ADAVFL-----SPPWGGP----SYLKDEVYDLEASLIPVPATELMRKARQ 964 >gi|261213231|ref|ZP_05927513.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. RC341] gi|260837505|gb|EEX64208.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. RC341] Length = 426 Score = 48.6 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85 + L P G++ILD GG + + GS V+A+D D + QE ++ + Sbjct: 235 ALTYLAPKAGELILDCCAAPGGKTAHILEHTPGSQVVAIDCDETRLKRVQENLQRLQLNA 294 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + Q + + D ++ D S Sbjct: 295 QVICGDARYPQQWWQGEQFDRILLDAPCS 323 >gi|225023758|ref|ZP_03712950.1| hypothetical protein EIKCOROL_00622 [Eikenella corrodens ATCC 23834] gi|224943640|gb|EEG24849.1| hypothetical protein EIKCOROL_00622 [Eikenella corrodens ATCC 23834] Length = 220 Score = 48.6 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 8/84 (9%) Query: 36 PGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYKE--QFSLFQ 89 G + +DAT G G+ F G V A D P A++ Q ++ +E Q L Sbjct: 45 EGGIAVDATAGN-GHDTLFLAQCVGSGGRVYAFDIQPQALAATQARLQAAREERQVRLIS 103 Query: 90 ATFSQLQDYVPDKGVDGVVFDLGV 113 A+ + L YV + V +VF+ G Sbjct: 104 ASHADLTHYVNEP-VHSIVFNCGY 126 >gi|207112007|ref|ZP_03246169.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori HPKX_438_CA4C1] Length = 33 Score = 48.6 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%) Query: 118 IDCGDRGFSFQKSGPLDMRMSC-SGISASDVVN 149 +D +RGFS++ PLDMRM ++A D+VN Sbjct: 1 LDTAERGFSYRVDAPLDMRMDQRQKMTARDIVN 33 >gi|134298946|ref|YP_001112442.1| putative rRNA methylase [Desulfotomaculum reducens MI-1] gi|134051646|gb|ABO49617.1| putative rRNA methylase [Desulfotomaculum reducens MI-1] Length = 185 Score = 48.6 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 16/112 (14%), Positives = 40/112 (35%), Gaps = 21/112 (18%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIAL 64 M++ + H L +++ G + +D T G G+ V A Sbjct: 1 MAAKLGHDF-------LAEIL-----RNGDLAVDGTMGN-GHDTLLLAQLVGSQGKVYAF 47 Query: 65 DRDPFAVSCGQETMRD---YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 D A+ ++ + + ++ L ++ Y+ + + +++LG Sbjct: 48 DIQEQAIDNTRQRLVSQNLFDQRVKLIHDGHQNIKHYI-EHPIRAAIYNLGY 98 >gi|157693437|ref|YP_001487899.1| rRNA methyltransferase [Bacillus pumilus SAFR-032] gi|157682195|gb|ABV63339.1| possible rRNA methyltransferase [Bacillus pumilus SAFR-032] Length = 191 Score = 48.6 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 38/95 (40%), Gaps = 9/95 (9%) Query: 26 EKVIALLNPAPGKVILDATFGAGGY-SRSFCKM---GSNVIALDRDPFAVSCGQETMRDY 81 ++++ G +++DAT G G+ + + V A D A+ ++ + + Sbjct: 11 KELLER-ACQKGDIVIDATMGN-GHDTLYLADLVGPDGQVFAFDVQEEAIEQTRKRLGEG 68 Query: 82 KEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGV 113 L +L ++P + G VF+LG Sbjct: 69 YPYVHLIHDGHEKLAHHLPRDVYEQISGAVFNLGY 103 >gi|87240722|gb|ABD32580.1| SAM (and some other nucleotide) binding motif; WW/Rsp5/WWP [Medicago truncatula] Length = 681 Score = 48.6 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 2/70 (2%) Query: 37 GKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQ 94 G ++D GAGG + F + +V+A+D DP + + Y +Q F Sbjct: 515 GGTLIDCFTGAGGNAIQFAQRCRHVVAIDIDPLKIDYARHNAAIYRVDDQIDFIAGDFFV 574 Query: 95 LQDYVPDKGV 104 L + V Sbjct: 575 LAPKLKADTV 584 >gi|206601448|gb|EDZ37936.1| biotin synthesis protein/methyltransferase [Leptospirillum sp. Group II '5-way CG'] Length = 228 Score = 48.6 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 12/83 (14%), Positives = 28/83 (33%), Gaps = 11/83 (13%) Query: 43 ATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP 100 T S + V+A D + + + + +F +FQ + + Sbjct: 57 GTL-----SELVLERYPQSEVLAFDLTQEMLDSAKVRLSRFGSRFRIFQGDYRN--KELF 109 Query: 101 DKGVDGVVFDLGVSSMQIDCGDR 123 G D ++ G++ + +R Sbjct: 110 GVGYDAILA--GMTLHHLTDSER 130 >gi|197334196|ref|YP_002157328.1| ribosomal RNA small subunit methyltransferase B [Vibrio fischeri MJ11] gi|197315686|gb|ACH65133.1| ribosomal RNA small subunit methyltransferase B [Vibrio fischeri MJ11] Length = 451 Score = 48.6 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 34/87 (39%), Gaps = 2/87 (2%) Query: 30 ALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQFSL 87 L P G++ILD GG + + +NV+A+D D + E + + + Sbjct: 262 EYLQPQNGELILDCCAAPGGKTAHILERTQDTNVVAIDCDETRLKRVYENLERLNLKAQV 321 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGVS 114 +++ + D ++ D S Sbjct: 322 ICGDARHPEEWWKGEQFDRILLDAPCS 348 >gi|152977113|ref|YP_001376630.1| putative rRNA methylase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025865|gb|ABS23635.1| putative rRNA methylase [Bacillus cytotoxicus NVH 391-98] Length = 190 Score = 48.6 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 28/90 (31%), Gaps = 10/90 (11%) Query: 33 NPAPGKVILDATFGAGGYSR----SFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFS 86 G +DAT G G+ V D A+ +++ E+ Sbjct: 17 AVKEGDYAVDATLGN-GHDACFLAEIVGENGKVFGFDIQKEAIENSTARLKEKGLEERTV 75 Query: 87 LFQATFSQLQDYVP---DKGVDGVVFDLGV 113 + L +P V G +F+LG Sbjct: 76 FIHDSHDTLLSVLPAEAKGKVTGAIFNLGY 105 >gi|310658196|ref|YP_003935917.1| RNA methylase [Clostridium sticklandii DSM 519] gi|308824974|emb|CBH21012.1| putative RNA methylase (modular protein) [Clostridium sticklandii] Length = 331 Score = 48.6 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 4/83 (4%) Query: 34 PAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQA 90 G ++DAT G G + + V A D D AV +E ++ Q Sbjct: 18 IKSGDKVVDATLGNGNDAEFLAQIVGEQGRVYAFDIDSDAVEACKERLQSKYLQIDFILD 77 Query: 91 TFSQLQDYVPDKGVDGVVFDLGV 113 + L YV D + +F+LG Sbjct: 78 SHENLNIYVKDT-ISAAIFNLGY 99 >gi|224136780|ref|XP_002326943.1| predicted protein [Populus trichocarpa] gi|222835258|gb|EEE73693.1| predicted protein [Populus trichocarpa] Length = 215 Score = 48.6 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 2/70 (2%) Query: 37 GKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQ 94 G I+D G GG + F + +VIA+D DP + Y +Q + F Sbjct: 52 GDTIIDCFTGVGGNAIQFAQRYKHVIAIDIDPKKIDYAFHNASIYGVSDQIDFIEGDFFA 111 Query: 95 LQDYVPDKGV 104 L + V Sbjct: 112 LASKLKADSV 121 >gi|312882737|ref|ZP_07742472.1| ribosomal RNA small subunit methyltransferase B [Vibrio caribbenthicus ATCC BAA-2122] gi|309369595|gb|EFP97112.1| ribosomal RNA small subunit methyltransferase B [Vibrio caribbenthicus ATCC BAA-2122] Length = 426 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 35/87 (40%), Gaps = 2/87 (2%) Query: 30 ALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQFSL 87 LN G++ILD GG + + N V+A+D D + + ++ + ++ Sbjct: 237 DFLNAQDGELILDCCAAPGGKTAHILERAPNCKVVAIDCDDTRLQRVHDNLQRLQLNATV 296 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGVS 114 +++ + D ++ D S Sbjct: 297 ICGDARNPEEWWQGEKFDRILLDAPCS 323 >gi|219848992|ref|YP_002463425.1| methyltransferase type 11 [Chloroflexus aggregans DSM 9485] gi|219543251|gb|ACL24989.1| Methyltransferase type 11 [Chloroflexus aggregans DSM 9485] Length = 241 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 8/108 (7%) Query: 1 MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN 60 + + + + + H+ + P +L +LL GK +LDA G G YS G+ Sbjct: 17 LAERYAEQVLTKPHNAYYE-RPAML----SLLPDVRGKRVLDAGCGPGVYSELLLDRGAE 71 Query: 61 VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVV 108 VIA+D +P V + ++ + + QA Q ++P D V+ Sbjct: 72 VIAIDANPKMVQLAHQRLQ---NRAQVLQADLGQPLTFLPTASFDLVI 116 >gi|262166812|ref|ZP_06034549.1| ribosomal RNA small subunit methyltransferase B [Vibrio mimicus VM223] gi|262026528|gb|EEY45196.1| ribosomal RNA small subunit methyltransferase B [Vibrio mimicus VM223] Length = 426 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQF 85 + L P G++ILD GG + + + V+A+D D + QE ++ K Sbjct: 235 ALTYLTPKAGELILDCCAAPGGKTAHILEHTPDSQVVAIDCDETRLKRVQENLQRLKLNA 294 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + QD+ + D ++ D S Sbjct: 295 QVICGDARYPQDWWQGEQFDRILLDAPCS 323 >gi|323488395|ref|ZP_08093642.1| SAM-dependent methyltransferase [Planococcus donghaensis MPA1U2] gi|323397902|gb|EGA90701.1| SAM-dependent methyltransferase [Planococcus donghaensis MPA1U2] Length = 187 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 12/94 (12%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCK----MGSNVIALDRDPFAVSCGQETMR 79 LLE+ + G V++D T G G+ F V A D A+ +E ++ Sbjct: 13 LLEQAV-----TSGDVVIDGTAGN-GHDTHFLASLTGANGKVFAFDIQAEAIHATRERVQ 66 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 ++ + L + ++++DYV + + VF+LG Sbjct: 67 EF-DHIELIHDSHAKIKDYVTEP-IAAAVFNLGY 98 >gi|295399585|ref|ZP_06809567.1| putative rRNA methylase [Geobacillus thermoglucosidasius C56-YS93] gi|312109860|ref|YP_003988176.1| rRNA methylase [Geobacillus sp. Y4.1MC1] gi|294979051|gb|EFG54647.1| putative rRNA methylase [Geobacillus thermoglucosidasius C56-YS93] gi|311214961|gb|ADP73565.1| rRNA methylase [Geobacillus sp. Y4.1MC1] Length = 191 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 10/91 (10%) Query: 32 LNPAPGKVILDATFGAGGY-SRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK--EQF 85 L G + +DAT G G+ + + +V D A+S ++++ ++ Sbjct: 16 LAVNEGDIAVDATVGN-GHDTLYLAQRVGESGHVFGFDIQKEAISATSARLQEHNMLQRV 74 Query: 86 SLFQATFSQLQDYVPDK---GVDGVVFDLGV 113 +LFQA+ QL + +P + G +F+LG Sbjct: 75 TLFQASHDQLIEKIPAHYHGRITGAMFNLGY 105 >gi|332522836|ref|ZP_08399088.1| putative rRNA methylase [Streptococcus porcinus str. Jelinkova 176] gi|332314100|gb|EGJ27085.1| putative rRNA methylase [Streptococcus porcinus str. Jelinkova 176] Length = 182 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 8/90 (8%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-E 83 L+ ++ +++DAT G G + F + A D A+ +E ++ + E Sbjct: 12 LDAILD-----TNSILVDATMGNGNDTLYFAPKVKRLYAFDVQEKALQVTREKLQKAQLE 66 Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 L Q ++ DY+ VD +F+LG Sbjct: 67 NVQLIQDGHEKVDDYLDQ--VDAAIFNLGY 94 >gi|315223317|ref|ZP_07865178.1| rRNA methylase family protein [Streptococcus anginosus F0211] gi|315187749|gb|EFU21503.1| rRNA methylase family protein [Streptococcus anginosus F0211] Length = 182 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 5/82 (6%) Query: 34 PAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQFSLFQAT 91 +++DAT G G+ + ++ V A D A+ + + + K + LF Sbjct: 16 ITKEDIVVDATMGN-GHDTLFLARLAKKVYAFDIQEQAIEQTTKRLAEAKLDNVELFLTG 74 Query: 92 FSQLQDYVPDKGVDGVVFDLGV 113 + YV + +F+LG Sbjct: 75 HENVDQYVE--SIKAAIFNLGY 94 >gi|59713152|ref|YP_205928.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Vibrio fischeri ES114] gi|59481253|gb|AAW87040.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Vibrio fischeri ES114] Length = 426 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 33/87 (37%), Gaps = 2/87 (2%) Query: 30 ALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQFSL 87 L P G++ILD GG + + + V+A+D D + E + + + Sbjct: 237 EYLQPQNGELILDCCAAPGGKTAHILERTQDTSVVAIDCDETRLKRVYENLERLNLKAQV 296 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGVS 114 +++ + D ++ D S Sbjct: 297 ICGDARHPEEWWKGEQFDRILLDAPCS 323 >gi|157374425|ref|YP_001473025.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella sediminis HAW-EB3] gi|226725393|sp|A8FSS4|RUMA_SHESH RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|157316799|gb|ABV35897.1| RNA methyltransferase, TrmA family [Shewanella sediminis HAW-EB3] Length = 442 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 2/89 (2%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82 ++++ + L+ P + +LD G G +S K G+ VI ++ P V +E D Sbjct: 285 MVKQAVDWLSVKPNERVLDLFCGVGNFSLPLAKSGAEVIGVEGVPEMVKQARENAADSGL 344 Query: 83 EQFSLFQATFS-QLQDYVPDKGVDGVVFD 110 + S F S L VD ++ D Sbjct: 345 DNVSFFHTDLSADLSKETWLGKVDKLLLD 373 >gi|15643290|ref|NP_228334.1| hypothetical protein TM0524 [Thermotoga maritima MSB8] gi|4981037|gb|AAD35609.1|AE001728_10 conserved hypothetical protein [Thermotoga maritima MSB8] Length = 254 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 51/149 (34%), Gaps = 31/149 (20%) Query: 29 IALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDR----------DPFAVSCG 74 I L P +++LD TFG G S + VI L+ Sbjct: 85 IESLQPEGNEIVLDTTFGLG--SEAILMAAFLPEGKVIGLEGSIHIYTIVKYGMENFETD 142 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++D ++ L+ A F + PD D V D + ++ S Sbjct: 143 IRWLKDALKRIELYHANFKEYIRSQPDNSFDVVYCD-----PMFENPV----YESSA--- 190 Query: 135 MRMSCSGISA-SDVVNQANVKDLTRILGI 162 M+ A D VN+ +++++ RI Sbjct: 191 --MNPLRPFAVYDTVNEEDIEEMLRIAKK 217 >gi|299469608|emb|CBN76462.1| methylase-related [Ectocarpus siliculosus] Length = 451 Score = 47.9 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 20/115 (17%) Query: 11 SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGY-SRSF-----CKMG-SNVIA 63 A H+ H LL + +A PG +LD T G G+ S K G ++ Sbjct: 261 PAASHSHMAH---LLWRQVAG----PGDTVLDCTAGN-GHDSLELAKIVALKDGVGSLYV 312 Query: 64 LDRDPFAVSCGQETMRD-----YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 +D A+ +E +R ++ +L F ++ + V VV++LG Sbjct: 313 MDVQERAIEATRERLRSELGELALKRSTLINGNFREMPAELEPLSVQLVVYNLGW 367 >gi|170758569|ref|YP_001785692.1| hypothetical protein CLK_3543 [Clostridium botulinum A3 str. Loch Maree] gi|169405558|gb|ACA53969.1| conserved hypothetical protein [Clostridium botulinum A3 str. Loch Maree] Length = 188 Score = 47.9 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 7/82 (8%) Query: 37 GKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQAT 91 G + +D T G G+ VI+ D A++ +E +R++ + +L Sbjct: 24 GDIAVDCTLGK-GHDTILLANLVGNKGKVISFDIQKEAINKTKEKLREFDYKNITLINDG 82 Query: 92 FSQLQDYVPDKGVDGVVFDLGV 113 L ++ + V +F+LG Sbjct: 83 HENLDRHIQE-KVKLFIFNLGY 103 >gi|168177698|ref|ZP_02612362.1| conserved hypothetical protein [Clostridium botulinum NCTC 2916] gi|182671192|gb|EDT83166.1| conserved hypothetical protein [Clostridium botulinum NCTC 2916] Length = 188 Score = 47.9 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 7/82 (8%) Query: 37 GKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQAT 91 G + +D T G G+ VI+ D A++ +E +R++ + +L Sbjct: 24 GDIAVDCTLGK-GHDTILLANLVGNKGKVISFDIQKEAINKTKEKLREFDYKNITLINDG 82 Query: 92 FSQLQDYVPDKGVDGVVFDLGV 113 L ++ + V +F+LG Sbjct: 83 HENLDRHIQE-KVKLFIFNLGY 103 >gi|148378358|ref|YP_001252899.1| hypothetical protein CBO0355 [Clostridium botulinum A str. ATCC 3502] gi|153931757|ref|YP_001382757.1| hypothetical protein CLB_0398 [Clostridium botulinum A str. ATCC 19397] gi|153936917|ref|YP_001386308.1| hypothetical protein CLC_0413 [Clostridium botulinum A str. Hall] gi|226947586|ref|YP_002802677.1| hypothetical protein CLM_0423 [Clostridium botulinum A2 str. Kyoto] gi|148287842|emb|CAL81908.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC 3502] gi|152927801|gb|ABS33301.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC 19397] gi|152932831|gb|ABS38330.1| conserved hypothetical protein [Clostridium botulinum A str. Hall] gi|226842840|gb|ACO85506.1| conserved hypothetical protein [Clostridium botulinum A2 str. Kyoto] Length = 188 Score = 47.9 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 7/82 (8%) Query: 37 GKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQAT 91 G + +D T G G+ VI+ D A++ +E +R++ + +L Sbjct: 24 GDIAVDCTLGK-GHDTILLANLVGNKGKVISFDIQKEAINKTREKLREFDYKNITLINDG 82 Query: 92 FSQLQDYVPDKGVDGVVFDLGV 113 L ++ + V +F+LG Sbjct: 83 HENLDKHIQE-KVKLFIFNLGY 103 >gi|196250012|ref|ZP_03148707.1| putative rRNA methylase [Geobacillus sp. G11MC16] gi|196210526|gb|EDY05290.1| putative rRNA methylase [Geobacillus sp. G11MC16] Length = 190 Score = 47.9 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 45/99 (45%), Gaps = 15/99 (15%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGY-SRSFCKM---GSNVIALDRDPFAVSCGQETMR 79 LLE+ + G + +DAT G G+ + ++ +V D P A++ + Sbjct: 13 LLERAV-----TEGDLAIDATVGN-GHDTVYLAELVGDSGHVFGFDIQPEAIAATTARLS 66 Query: 80 DYK--EQFSLFQATFSQLQDYVPDK---GVDGVVFDLGV 113 + ++ +LFQ + S+L +P + G VF+LG Sbjct: 67 EQGLHDRVTLFQQSHSELLTALPSDVYGRIAGAVFNLGY 105 >gi|187777042|ref|ZP_02993515.1| hypothetical protein CLOSPO_00587 [Clostridium sporogenes ATCC 15579] gi|187773970|gb|EDU37772.1| hypothetical protein CLOSPO_00587 [Clostridium sporogenes ATCC 15579] Length = 188 Score = 47.9 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 7/82 (8%) Query: 37 GKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQAT 91 G + +D T G G+ VI+ D A+ +E ++D + +L Sbjct: 24 GDIAVDCTLGK-GHDTILLANLVGNEGKVISFDIQKEAIDKTKEKLKDIDYKNITLINDG 82 Query: 92 FSQLQDYVPDKGVDGVVFDLGV 113 L Y+ + V +F+LG Sbjct: 83 HENLDRYIQE-KVKLFIFNLGY 103 >gi|302142307|emb|CBI19510.3| unnamed protein product [Vitis vinifera] Length = 683 Score = 47.9 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 2/69 (2%) Query: 38 KVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQL 95 +I+D G GG + F + +VIA+D DP + Q Y ++ + L Sbjct: 516 GIIVDCFTGVGGNAIQFAQRSKHVIAIDIDPKKIEYAQHNAAIYGVDDRIDFIKGDSFLL 575 Query: 96 QDYVPDKGV 104 + V Sbjct: 576 ASTLKADTV 584 >gi|225458633|ref|XP_002282801.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 780 Score = 47.9 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 2/69 (2%) Query: 38 KVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQL 95 +I+D G GG + F + +VIA+D DP + Q Y ++ + L Sbjct: 613 GIIVDCFTGVGGNAIQFAQRSKHVIAIDIDPKKIEYAQHNAAIYGVDDRIDFIKGDSFLL 672 Query: 96 QDYVPDKGV 104 + V Sbjct: 673 ASTLKADTV 681 >gi|260771086|ref|ZP_05880014.1| ribosomal RNA small subunit methyltransferase B [Vibrio furnissii CIP 102972] gi|260613975|gb|EEX39166.1| ribosomal RNA small subunit methyltransferase B [Vibrio furnissii CIP 102972] Length = 426 Score = 47.9 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 33/89 (37%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85 + L P G++ILD GG + + G +V+A+D D + + ++ Sbjct: 235 ALHYLQPQDGELILDCCAAPGGKTAHILERTHGCDVVAIDCDDTRLKRVHDNLKRLNLSA 294 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + + + D ++ D S Sbjct: 295 KVVCGDARYPEQWWQGGQFDRILLDAPCS 323 >gi|168029694|ref|XP_001767360.1| predicted protein [Physcomitrella patens subsp. patens] gi|162681424|gb|EDQ67851.1| predicted protein [Physcomitrella patens subsp. patens] Length = 225 Score = 47.9 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 2/71 (2%) Query: 36 PGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFS 93 G +I+DA G GG + F G +VIA+D DP + + Y + F Sbjct: 48 SGGLIVDAFTGVGGNAIQFALRGDHVIAIDIDPLKIEYARHNAAIYGVVDHIEFIVGDFF 107 Query: 94 QLQDYVPDKGV 104 ++ + + Sbjct: 108 KIAPNLKADSI 118 >gi|160947166|ref|ZP_02094333.1| hypothetical protein PEPMIC_01098 [Parvimonas micra ATCC 33270] gi|158446300|gb|EDP23295.1| hypothetical protein PEPMIC_01098 [Parvimonas micra ATCC 33270] Length = 183 Score = 47.9 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 33/82 (40%), Gaps = 4/82 (4%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91 K+ +D T G G S++ ++ + D A+ ++ ++ Y F L Sbjct: 19 VKDVKIAVDMTVGNGFDSKNILEILKPEKLYCFDIQQEALDNSKKLLKQY-SNFELILEN 77 Query: 92 FSQLQDYVPDKGVDGVVFDLGV 113 +V + +D +++LG Sbjct: 78 HKNFDKFVKE-NIDFAMYNLGY 98 >gi|229087300|ref|ZP_04219442.1| hypothetical protein bcere0022_38710 [Bacillus cereus Rock3-44] gi|228696002|gb|EEL48845.1| hypothetical protein bcere0022_38710 [Bacillus cereus Rock3-44] Length = 177 Score = 47.9 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 10/90 (11%) Query: 33 NPAPGKVILDATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFS 86 G +DAT G G+ V D A+ +++ E+ Sbjct: 4 AVTEGDYAVDATLGN-GHDTCFLAEIVGENGKVFGFDIQKEAIENSTVRLKEKGVEERTV 62 Query: 87 LFQATFSQLQDYVPDK---GVDGVVFDLGV 113 L + L D +P++ V G +F+LG Sbjct: 63 LVHDSHDTLLDVLPEEATGKVTGAIFNLGY 92 >gi|315178589|gb|ADT85503.1| cytosine-C5-methylase [Vibrio furnissii NCTC 11218] Length = 426 Score = 47.9 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 33/89 (37%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85 + L P G++ILD GG + + G +V+A+D D + + ++ Sbjct: 235 ALHYLQPQDGELILDCCAAPGGKTAHILERTHGCDVVAIDCDDTRLKRVHDNLKRLNLSA 294 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + + + D ++ D S Sbjct: 295 KVVCGDARYPEQWWQGGQFDRILLDAPCS 323 >gi|222152593|ref|YP_002561768.1| rRNA methylase [Streptococcus uberis 0140J] gi|222113404|emb|CAR41065.1| putative rRNA methylase [Streptococcus uberis 0140J] Length = 181 Score = 47.9 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 3/81 (3%) Query: 37 GKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQL 95 + +DAT G G + F + V A D A+S Q+ + E L + Sbjct: 19 DSIFVDATVGNGNDTLYFAPLVKKVYAFDIQKEAISRTQQKLEANGIENVILIHDGHENV 78 Query: 96 QDYVPDKGVDGVVFDLGVSSM 116 YV D +D +F+LG Sbjct: 79 NHYVQD--IDAAIFNLGYLPH 97 >gi|321312586|ref|YP_004204873.1| putative RNA methylase [Bacillus subtilis BSn5] gi|320018860|gb|ADV93846.1| putative RNA methylase [Bacillus subtilis BSn5] Length = 194 Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 9/86 (10%) Query: 36 PGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRD-YKEQFSLFQA 90 G +++DAT G G+ F +V A D AV+ +E + D Y+ + +LFQ Sbjct: 20 EGDIVVDATMGN-GHDTQFLAELVGENGHVYAFDIQESAVANTKERLGDMYQARTTLFQK 78 Query: 91 TFSQLQDYVP---DKGVDGVVFDLGV 113 + ++ + +P V VF+LG Sbjct: 79 SHDKIAESLPPETHGKVAAAVFNLGY 104 >gi|281411743|ref|YP_003345822.1| hypothetical protein Tnap_0304 [Thermotoga naphthophila RKU-10] gi|281372846|gb|ADA66408.1| conserved hypothetical protein [Thermotoga naphthophila RKU-10] Length = 254 Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 51/149 (34%), Gaps = 31/149 (20%) Query: 29 IALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDR----------DPFAVSCG 74 I L P +++LD TFG G S + VI L+ Sbjct: 85 IESLQPEGNEIVLDTTFGLG--SEAILMAAFLPEGKVIGLEGSIHIYTIVKYGMENFETD 142 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++D ++ L+ A F + PD D V D + ++ S Sbjct: 143 IRWLKDALKRIELYHANFKEYIRSQPDNSFDVVYCD-----PMFENPV----YESSA--- 190 Query: 135 MRMSCSGISA-SDVVNQANVKDLTRILGI 162 M+ A D VN+ +++++ RI Sbjct: 191 --MNPLRPFAVYDTVNEEDIEEMLRIAKK 217 >gi|143582026|sp|Q0HXI0|RUMA_SHESR RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase Length = 449 Score = 47.5 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 2/89 (2%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82 ++ + + L P PG+ ILD G G +S K+G+ VI ++ P VS +E Sbjct: 291 MVAQALDWLAPQPGERILDLFCGMGNFSLPLAKLGAEVIGVEGVPEMVSQARENAAANGL 350 Query: 83 EQFSLFQATFSQLQDYVPDKG-VDGVVFD 110 + + S P G +D ++ D Sbjct: 351 SNLTFYHGDLSADLSCEPWMGKIDKLLLD 379 >gi|114046682|ref|YP_737232.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella sp. MR-7] gi|113888124|gb|ABI42175.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shewanella sp. MR-7] Length = 463 Score = 47.5 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 2/89 (2%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82 ++ + + L P PG+ ILD G G +S K+G+ VI ++ P VS +E Sbjct: 305 MVAQALDWLAPQPGERILDLFCGMGNFSLPLAKLGAEVIGVEGVPEMVSQARENAAANGL 364 Query: 83 EQFSLFQATFSQLQDYVPDKG-VDGVVFD 110 + + S P G +D ++ D Sbjct: 365 SNLTFYHGDLSADLSCEPWMGKIDKLLLD 393 >gi|145629992|ref|ZP_01785774.1| hypothetical protein CGSHi22421_08073 [Haemophilus influenzae R3021] gi|144984273|gb|EDJ91696.1| hypothetical protein CGSHi22421_08073 [Haemophilus influenzae R3021] Length = 254 Score = 47.5 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 65/174 (37%), Gaps = 29/174 (16%) Query: 22 PVLLEKVIA---LLNPAP---GKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCG 74 P+ L ++I +L+ P GK +LD G GG+ + + + G + VI D + Sbjct: 24 PISLNEIIEKPTMLSLLPNLKGKKLLDLGCGTGGHLQLYLERGAAKVIGTDLSEKMLEQA 83 Query: 75 QETMR---DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++ ++ + +FSL+ +L + + FD+ SS F+F Sbjct: 84 EKDLQKCGQFSGRFSLYHLPMEKLAELLESH------FDVITSS---------FAFHYIE 128 Query: 132 PLDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 +S +S++ + + +T E+ V R + Sbjct: 129 NFPTLLSTIHDKLSSNGTLIFSQEHPITTCHKE--GERWEKNDKKQQVAYRLNH 180 >gi|143581977|sp|Q0HL77|RUMA_SHESM RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase Length = 449 Score = 47.5 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 2/89 (2%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82 ++ + + L P PG+ ILD G G +S K+G+ VI ++ P VS +E Sbjct: 291 MVAQALDWLAPQPGERILDLFCGMGNFSLPLAKLGAEVIGVEGVPDMVSQARENAAANGL 350 Query: 83 EQFSLFQATFSQLQDYVPDKG-VDGVVFD 110 + + S P G +D ++ D Sbjct: 351 SNLTFYHGDLSADLSCEPWMGKIDKLLLD 379 >gi|113969454|ref|YP_733247.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella sp. MR-4] gi|113884138|gb|ABI38190.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shewanella sp. MR-4] Length = 463 Score = 47.5 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 2/89 (2%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82 ++ + + L P PG+ ILD G G +S K+G+ VI ++ P VS +E Sbjct: 305 MVAQALDWLAPQPGERILDLFCGMGNFSLPLAKLGAEVIGVEGVPDMVSQARENAAANGL 364 Query: 83 EQFSLFQATFSQLQDYVPDKG-VDGVVFD 110 + + S P G +D ++ D Sbjct: 365 SNLTFYHGDLSADLSCEPWMGKIDKLLLD 393 >gi|149190437|ref|ZP_01868708.1| Sun protein [Vibrio shilonii AK1] gi|148835691|gb|EDL52657.1| Sun protein [Vibrio shilonii AK1] Length = 425 Score = 47.5 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85 I L P G++ILD GG + + S V+A+D D + + ++ K Q Sbjct: 235 SINYLEPKDGELILDCCAAPGGKTAHILERTKDSQVVAIDCDETRLKRVHDNLKRLKLQA 294 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + ++ + D ++ D S Sbjct: 295 KVVCGDARTPSEWWQGEQFDRILLDAPCS 323 >gi|260599608|ref|YP_003212179.1| 16S rRNA methyltransferase B [Cronobacter turicensis z3032] gi|260218785|emb|CBA34133.1| Ribosomal RNA small subunit methyltransferase B [Cronobacter turicensis z3032] Length = 425 Score = 47.5 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85 + LL P G+ ILD GG + + NV+A+D D +S E ++ K + Sbjct: 234 CVELLAPQNGETILDLCAAPGGKTTHILEAAPQANVLAVDVDAQRISRVYENLKRVKMRA 293 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + + D D ++ D S Sbjct: 294 EVKVGDGRFPATWCGDMQFDRILLDAPCS 322 >gi|81429048|ref|YP_396048.1| putative methyltransferase [Lactobacillus sakei subsp. sakei 23K] gi|78610690|emb|CAI55741.1| Putative methyltransferase [Lactobacillus sakei subsp. sakei 23K] Length = 186 Score = 47.5 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 45/122 (36%), Gaps = 19/122 (15%) Query: 33 NPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETM--RDYKEQFSL 87 PG V++DAT G G + + +V D A++ Q+ + + +Q SL Sbjct: 17 AIRPGDVVIDATVGHGDDTLFLAEKVADYGHVYGFDIQKEALATCQKRLTTANLSQQVSL 76 Query: 88 FQATFSQLQDYVP-DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASD 146 ++ +P D V +F LG S D+ + + ISA Sbjct: 77 INQGHERIITALPADLKVQAAIFSLG-------------SLSSETSQDVTLPNTTISAYH 123 Query: 147 VV 148 V Sbjct: 124 QV 125 >gi|322825679|gb|EFZ30569.1| proliferator-activated receptor-interacting protein interacting protein, putative [Trypanosoma cruzi] Length = 250 Score = 47.5 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 4/71 (5%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQ 96 +LD G GG + ++ V+A+D DP A+ ++ + Y ++ S + F L+ Sbjct: 63 CVLDLFCGCGGDTVQLARVYEKVVAVDIDPDAIEAAKKNVEVYGVGDRVSFYCCDFRTLK 122 Query: 97 DYVPDKGVDGV 107 + + D V Sbjct: 123 --LDNMEFDAV 131 >gi|332701445|ref|ZP_08421533.1| rRNA methylase [Desulfovibrio africanus str. Walvis Bay] gi|332551594|gb|EGJ48638.1| rRNA methylase [Desulfovibrio africanus str. Walvis Bay] Length = 206 Score = 47.5 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 8/88 (9%) Query: 33 NPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMRDYK--EQFSL 87 PG + +DAT G G + + V D A+ +E + E+ + Sbjct: 18 ALRPGDLAVDATLGNGRDAVLLAESVGQAGKVFCFDIQEVAIHRARERLAAAGLLERVQI 77 Query: 88 FQATFSQLQDYVP---DKGVDGVVFDLG 112 F+A +L +++P V F+LG Sbjct: 78 FRAGHERLTEHLPPESQGHVRAATFNLG 105 >gi|221120690|ref|XP_002160870.1| PREDICTED: similar to trimethylguanosine synthase homolog [Hydra magnipapillata] Length = 265 Score = 47.5 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 2/68 (2%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96 +++DA G GG + F ++VIA+D DP + C ++ Y + S F L Sbjct: 105 IVVDAFCGIGGNTIQFALKSNHVIAIDIDPVRLECARQNAAIYGVENRISFILGDFFVLA 164 Query: 97 DYVPDKGV 104 + V Sbjct: 165 PSLKADVV 172 >gi|251795313|ref|YP_003010044.1| rRNA methylase [Paenibacillus sp. JDR-2] gi|247542939|gb|ACS99957.1| putative rRNA methylase [Paenibacillus sp. JDR-2] Length = 192 Score = 47.5 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 11/91 (12%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDYKEQ-----F 85 PG +++DAT G G + ++ V A D A+ E +R +E+ Sbjct: 18 VQPGDIVIDATAGGGVDTLKLAELVGARGTVHAFDIQQDALDRTLERLRPLEERGKLPQV 77 Query: 86 SLFQATFSQLQDYV---PDKGVDGVVFDLGV 113 L + + + V + V V+F+LG Sbjct: 78 RLHLRNHALMAEAVGPSAEGNVAAVMFNLGY 108 >gi|117919559|ref|YP_868751.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella sp. ANA-3] gi|143581951|sp|A0KU76|RUMA_SHESA RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|117611891|gb|ABK47345.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shewanella sp. ANA-3] Length = 449 Score = 47.5 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 2/89 (2%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82 ++ + + L P PG+ ILD G G +S K+G+ VI ++ P VS +E Sbjct: 291 MVAQALEWLAPQPGERILDLFCGMGNFSLPLAKLGAEVIGVEGVPEMVSQARENAAANGL 350 Query: 83 EQFSLFQATFSQLQDYVPDKG-VDGVVFD 110 + + S P G +D ++ D Sbjct: 351 SNLTFYHGDLSADLSCEPWMGKIDKLLLD 379 >gi|118579003|ref|YP_900253.1| putative rRNA methylase [Pelobacter propionicus DSM 2379] gi|118501713|gb|ABK98195.1| putative rRNA methylase [Pelobacter propionicus DSM 2379] Length = 196 Score = 47.5 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 32/86 (37%), Gaps = 8/86 (9%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK--EQFSL 87 PG + +DAT G G+ V A D A+S + E+ L Sbjct: 27 IQPGDLAVDATCGN-GHDTLLLANLVGPSGRVWAFDVQERAISATSRRLGQAGMAERVEL 85 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGV 113 L + VP V GV+F+LG Sbjct: 86 ILGGHESLAEQVPTP-VRGVMFNLGY 110 >gi|54298357|ref|YP_124726.1| hypothetical protein lpp2419 [Legionella pneumophila str. Paris] gi|53752142|emb|CAH13572.1| hypothetical protein lpp2419 [Legionella pneumophila str. Paris] Length = 212 Score = 47.5 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 5/75 (6%) Query: 38 KVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQL 95 K+++D G GG + + + G VIA++ D ++ + R Y + F Sbjct: 58 KIVVDGFCGIGGSAIALARTGKKVIAIEMDSVRLAMAKNNARVYGVEHLITFVHGDFF-- 115 Query: 96 QDYVPDKGVDGVVFD 110 D + D V+ D Sbjct: 116 -DVAAEIKADAVLID 129 >gi|148360197|ref|YP_001251404.1| hypothetical protein LPC_2129 [Legionella pneumophila str. Corby] gi|148281970|gb|ABQ56058.1| hypothetical protein LPC_2129 [Legionella pneumophila str. Corby] Length = 212 Score = 47.5 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 5/75 (6%) Query: 38 KVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQL 95 K+++D G GG + + + G VIA++ D ++ + R Y + F Sbjct: 58 KIVVDGFCGIGGSAIALARTGKKVIAIEMDSVRLAMAKNNARVYGVEHLITFVHGDFF-- 115 Query: 96 QDYVPDKGVDGVVFD 110 D + D V+ D Sbjct: 116 -DVAAEIKADAVLID 129 >gi|294789034|ref|ZP_06754274.1| ribosomal RNA small subunit methyltransferase B [Simonsiella muelleri ATCC 29453] gi|294483136|gb|EFG30823.1| ribosomal RNA small subunit methyltransferase B [Simonsiella muelleri ATCC 29453] Length = 421 Score = 47.1 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 1/82 (1%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQETMRDYKEQFSLFQ 89 LLNP G+ +LDA GG + ++ +V+ALD D ++ QE + Q +L Sbjct: 239 LLNPQAGERVLDACAAPGGKTGHILELADCDVVALDIDNKRLARVQENLSRLNFQATLHC 298 Query: 90 ATFSQLQDYVPDKGVDGVVFDL 111 A + ++ + D ++ D+ Sbjct: 299 APAENVHEWWDGQPFDAILADV 320 >gi|138896384|ref|YP_001126837.1| hypothetical protein GTNG_2747 [Geobacillus thermodenitrificans NG80-2] gi|134267897|gb|ABO68092.1| Conserved hypothetical protein [Geobacillus thermodenitrificans NG80-2] Length = 191 Score = 47.1 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 45/99 (45%), Gaps = 15/99 (15%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGY-SRSFCKM---GSNVIALDRDPFAVSCGQETMR 79 LLE+ + G + +DAT G G+ + ++ +V D P A++ + Sbjct: 13 LLERAV-----TEGDLAIDATVGN-GHDTVYLAELVGDSGHVFGFDIQPEAIAATTARLS 66 Query: 80 DYK--EQFSLFQATFSQLQDYVPDK---GVDGVVFDLGV 113 + ++ +LFQ + S+L +P + G VF+LG Sbjct: 67 EQGLLDRVTLFQQSHSELLTALPSDVYGRIGGAVFNLGY 105 >gi|168184845|ref|ZP_02619509.1| conserved hypothetical protein [Clostridium botulinum Bf] gi|237793675|ref|YP_002861227.1| hypothetical protein CLJ_B0411 [Clostridium botulinum Ba4 str. 657] gi|182672096|gb|EDT84057.1| conserved hypothetical protein [Clostridium botulinum Bf] gi|229263450|gb|ACQ54483.1| conserved hypothetical protein [Clostridium botulinum Ba4 str. 657] Length = 188 Score = 47.1 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 7/82 (8%) Query: 37 GKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQAT 91 G + +D T G G+ VI+ D A++ +E +R + + +L Sbjct: 24 GDIAVDCTLGK-GHDTILLANLVGNKGKVISFDIQKEAINKTKEKLRKFDYKNITLINDG 82 Query: 92 FSQLQDYVPDKGVDGVVFDLGV 113 L ++ + V +F+LG Sbjct: 83 HENLDRHIQE-KVKLFIFNLGY 103 >gi|229845963|ref|ZP_04466075.1| hypothetical protein CGSHi7P49H1_03913 [Haemophilus influenzae 7P49H1] gi|229810967|gb|EEP46684.1| hypothetical protein CGSHi7P49H1_03913 [Haemophilus influenzae 7P49H1] Length = 254 Score = 47.1 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 11/96 (11%) Query: 22 PVLLEKVIA------LLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCG 74 P+ L +++ LL GK +LD G GG+ + + K G + VI D + Sbjct: 24 PISLNEIVEKPTMLSLLPDLKGKKLLDLGCGTGGHLQLYLKRGAAKVIGTDLSEKMLEQA 83 Query: 75 QETMR---DYKEQFSLFQATFSQLQDYVPDKGVDGV 107 ++ ++ + +FSL+ +L + +P+ D + Sbjct: 84 EKDLQKCGQFSGRFSLYHLPMEKLAE-LPECHFDVI 118 >gi|145223449|ref|YP_001134127.1| methyltransferase type 11 [Mycobacterium gilvum PYR-GCK] gi|145215935|gb|ABP45339.1| Methyltransferase type 11 [Mycobacterium gilvum PYR-GCK] Length = 207 Score = 47.1 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 5/71 (7%) Query: 46 GAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD-K 102 G G ++ + V A+D DP + E + Y + L Q + + L + Sbjct: 47 GYG--TQLILERFGAATVDAVDLDPAMIRRAGERLARYGNRVRLVQGSATDLSTALDAGD 104 Query: 103 GVDGVVFDLGV 113 G G VFD G+ Sbjct: 105 GSYGAVFDFGI 115 >gi|148978298|ref|ZP_01814803.1| Sun protein [Vibrionales bacterium SWAT-3] gi|145962457|gb|EDK27735.1| Sun protein [Vibrionales bacterium SWAT-3] Length = 426 Score = 47.1 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 35/89 (39%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQF 85 + L P G++ILD GG + + ++ V+A+D D + + + + + Sbjct: 235 SVDYLTPKDGELILDCCAAPGGKTAHILEHTNDTEVVAIDCDIKRLDRVYDNLERLQLRA 294 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + +++ D ++ D S Sbjct: 295 DVICGDARYPEEWWMGDKFDRILLDAPCS 323 >gi|24374962|ref|NP_719005.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella oneidensis MR-1] gi|50401580|sp|Q8EBQ3|RUMA_SHEON RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|24349686|gb|AAN56449.1|AE015782_1 RNA methyltransferase, TrmA family [Shewanella oneidensis MR-1] Length = 449 Score = 47.1 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 2/89 (2%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETM-RDYK 82 ++ + + L P PG+ ILD G G +S +MG++VI ++ P VS +E + Sbjct: 291 MVAQALDWLAPQPGERILDLFCGMGNFSLPLARMGADVIGVEGVPEMVSQARENAVANGL 350 Query: 83 EQFSLFQATFS-QLQDYVPDKGVDGVVFD 110 + + S L +D ++ D Sbjct: 351 SNLTFYHGDLSADLSSEPWMGKIDKLLLD 379 >gi|322804628|emb|CBZ02180.1| sam-dependent methyltransferase, MraW methylase family [Clostridium botulinum H04402 065] Length = 188 Score = 47.1 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 35/82 (42%), Gaps = 7/82 (8%) Query: 37 GKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQAT 91 G + +D T G G+ VI+ D A++ +E +R++ + +L Sbjct: 24 GDIAVDCTLGK-GHDTVLLANLVGNKGKVISFDIQKEAINKTREKLREFDYKNITLINDG 82 Query: 92 FSQLQDYVPDKGVDGVVFDLGV 113 +L ++ + V +F+LG Sbjct: 83 HEKLDKHIQE-KVKLFIFNLGY 103 >gi|110643527|ref|YP_671257.1| 16S rRNA methyltransferase B [Escherichia coli 536] gi|123343554|sp|Q0TCH3|RSMB_ECOL5 RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|110345119|gb|ABG71356.1| SUN protein [Escherichia coli 536] Length = 429 Score = 47.1 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQF 85 + L P G+ ILD G GG + ++ V+A+D D +S + ++ + Sbjct: 238 CMTWLAPQNGEHILDLCAGPGGKTTHILEVAPEAQVLAVDIDEQRLSRVYDNLKRLGMKA 297 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 ++ Q + ++ D ++ D S Sbjct: 298 TVKQGDGRYPSQWCGEQQFDRILLDAPCS 326 >gi|319938710|ref|ZP_08013074.1| methyltransferase [Streptococcus anginosus 1_2_62CV] gi|319811760|gb|EFW08026.1| methyltransferase [Streptococcus anginosus 1_2_62CV] Length = 182 Score = 47.1 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 10/91 (10%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82 LE+V+ +++DAT G G+ + ++ V A D AV + + + K Sbjct: 12 LEEVV-----TDEDIVVDATMGN-GHDTLFLARLAKKVYAFDIQEQAVEQTTKRLAEAKL 65 Query: 83 EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + L + YV + +F+LG Sbjct: 66 DNVELLLTGHENVDQYVA--SIKAAIFNLGY 94 >gi|260774556|ref|ZP_05883469.1| ribosomal RNA small subunit methyltransferase B [Vibrio metschnikovii CIP 69.14] gi|260610462|gb|EEX35668.1| ribosomal RNA small subunit methyltransferase B [Vibrio metschnikovii CIP 69.14] Length = 426 Score = 47.1 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 35/89 (39%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQETMRDYKEQF 85 I L P G++ILD GG + + + V+A+D D + + + + + Sbjct: 235 AIDYLQPQDGELILDCCAAPGGKTAHILEHTQDTEVVAIDSDAARLERVYDNLERLQLRA 294 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + +++ + D ++ D S Sbjct: 295 DVICGDARYPEEWWQGEQFDRILLDAPCS 323 >gi|153812378|ref|ZP_01965046.1| hypothetical protein RUMOBE_02777 [Ruminococcus obeum ATCC 29174] gi|149831540|gb|EDM86627.1| hypothetical protein RUMOBE_02777 [Ruminococcus obeum ATCC 29174] Length = 187 Score = 46.7 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 5/86 (5%) Query: 33 NPAPGKVILDATFGAGGYS---RSFCKMGSNVIALDRDPFAVSCGQETM--RDYKEQFSL 87 PG + +DAT G G + S C +V A D A+ ++ + D + ++L Sbjct: 17 QVQPGDICIDATMGNGNDTLLLSSLCGKDGHVFAFDIQEEALINTRKRLMEADAPQNYTL 76 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGV 113 + + ++ YV V + F+LG Sbjct: 77 LLESHTNIEHYVDPGTVSCITFNLGY 102 >gi|296331975|ref|ZP_06874439.1| putative RNA methylase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675631|ref|YP_003867303.1| putative RNA methylase [Bacillus subtilis subsp. spizizenii str. W23] gi|296150746|gb|EFG91631.1| putative RNA methylase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413875|gb|ADM38994.1| putative RNA methylase [Bacillus subtilis subsp. spizizenii str. W23] Length = 194 Score = 46.7 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 9/86 (10%) Query: 36 PGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETM-RDYKEQFSLFQA 90 G +++DAT G G+ F +V A D AV+ +E + Y+ + +LF Sbjct: 20 EGDIVIDATMGN-GHDTQFLAELVGENGHVYAFDIQESAVANTKERLGEAYQARTTLFHK 78 Query: 91 TFSQLQDYVP---DKGVDGVVFDLGV 113 + ++ +P V VF+LG Sbjct: 79 SHDKIAKSLPPETHGKVAAAVFNLGY 104 >gi|218232477|ref|YP_002369548.1| hypothetical protein BCB4264_A4862 [Bacillus cereus B4264] gi|218160434|gb|ACK60426.1| conserved hypothetical protein [Bacillus cereus B4264] Length = 190 Score = 46.7 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 31/90 (34%), Gaps = 10/90 (11%) Query: 33 NPAPGKVILDATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFS 86 G +DAT G G+ V D A+ +++ K E+ Sbjct: 17 AVKEGDYAVDATLGN-GHDTCFLAEIVGDNGKVFGFDIQKEAIESSTTRLKEKKLFERTV 75 Query: 87 LFQATFSQLQDYVPDK---GVDGVVFDLGV 113 L + L +P+ V G +F+LG Sbjct: 76 LVHDSHDTLLSILPEDAKGKVTGAIFNLGY 105 >gi|161506038|ref|YP_001573150.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|224493259|sp|A9MN78|RSMB_SALAR RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|160867385|gb|ABX24008.1| hypothetical protein SARI_04219 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 429 Score = 46.7 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85 +A L P G+ ILD GG + + +V+A+D D +S + ++ + Sbjct: 238 CVAFLAPQNGEHILDLCAAPGGKTTHILEAAPEADVLAVDVDEQRLSRIYDNLKRLGMKA 297 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 ++ Q + ++ D ++ D S Sbjct: 298 TVKQGDGRYPAQWCDEQQFDRILLDAPCS 326 >gi|221101377|ref|XP_002169665.1| PREDICTED: similar to trimethylguanosine synthase homolog, partial [Hydra magnipapillata] Length = 198 Score = 46.7 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 2/68 (2%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96 +++DA G GG + F ++VIA+D DP + C ++ Y + S F L Sbjct: 38 IVIDAFCGIGGNTIQFALKSNHVIAIDIDPVRLECARQNAAIYGVENRISFILGDFFVLA 97 Query: 97 DYVPDKGV 104 + V Sbjct: 98 PSLKADVV 105 >gi|242281044|ref|YP_002993173.1| rRNA methylase [Desulfovibrio salexigens DSM 2638] gi|242123938|gb|ACS81634.1| putative rRNA methylase [Desulfovibrio salexigens DSM 2638] Length = 190 Score = 46.7 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 44/99 (44%), Gaps = 14/99 (14%) Query: 22 PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETM 78 VL +V+ PG + +DAT G G + + +V D AV+ ++ + Sbjct: 12 SVLC-EVLH-----PGCIGVDATVGNGYDTVFLSEKAGPDGHVFGFDIQEDAVNQTEQRL 65 Query: 79 RD--YKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLG 112 + +++F + + + +P + V+ V+F+LG Sbjct: 66 NEECLPANWTIFHSGHENMLELIPSEFHGRVNAVMFNLG 104 >gi|332304407|ref|YP_004432258.1| sun protein [Glaciecola agarilytica 4H-3-7+YE-5] gi|332171736|gb|AEE20990.1| sun protein [Glaciecola agarilytica 4H-3-7+YE-5] Length = 437 Score = 46.7 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 3/88 (3%) Query: 30 ALLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCGQETMRDYKEQFS 86 LLN P + ILD GG + ++ + +A+D DP + +E + Q S Sbjct: 244 NLLNSQPNERILDCCAAPGGKTCHILELEPKIASCVAMDIDPSRLQRIEENLTRLGHQAS 303 Query: 87 LFQATFSQLQDYVPDKGVDGVVFDLGVS 114 L S+ + + + D ++ D S Sbjct: 304 LICGDASEPKAWWDGEQFDRILLDAPCS 331 >gi|194098054|ref|YP_002001102.1| hypothetical protein NGK_0477 [Neisseria gonorrhoeae NCCP11945] gi|254493236|ref|ZP_05106407.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291] gi|268594375|ref|ZP_06128542.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] gi|268596371|ref|ZP_06130538.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|268598499|ref|ZP_06132666.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11] gi|268600852|ref|ZP_06135019.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18] gi|268603157|ref|ZP_06137324.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1] gi|268681638|ref|ZP_06148500.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332] gi|268683866|ref|ZP_06150728.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679] gi|268686108|ref|ZP_06152970.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035] gi|291044339|ref|ZP_06570048.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|193933344|gb|ACF29168.1| Conserved hypothetical protein [Neisseria gonorrhoeae NCCP11945] gi|226512276|gb|EEH61621.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291] gi|268547764|gb|EEZ43182.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] gi|268550159|gb|EEZ45178.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|268582630|gb|EEZ47306.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11] gi|268584983|gb|EEZ49659.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18] gi|268587288|gb|EEZ51964.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1] gi|268621922|gb|EEZ54322.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332] gi|268624150|gb|EEZ56550.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679] gi|268626392|gb|EEZ58792.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035] gi|291011233|gb|EFE03229.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|317163791|gb|ADV07332.1| hypothetical protein NGTW08_0360 [Neisseria gonorrhoeae TCDC-NG08107] Length = 117 Score = 46.7 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 36/95 (37%), Gaps = 12/95 (12%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMR 79 LL + + G LD T G G+ F V A D P A++ + ++ Sbjct: 11 LLREAL-----PEGGNALDGTAGN-GHDTLFLAQTAGNRGKVWAFDIQPQALNNTRCRLQ 64 Query: 80 DYK-EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + L L+ Y+P+ +D VF+ G Sbjct: 65 EAGYSNVRLILDGHENLKQYIPEP-LDAAVFNFGW 98 >gi|324328648|gb|ADY23908.1| SAM-dependent methyltransferase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 190 Score = 46.7 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 10/90 (11%) Query: 33 NPAPGKVILDATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFS 86 G +DAT G G+ V D A+ +++ + E+ Sbjct: 17 AVKEGDYAVDATLGN-GHDTCFLAEIVGENGKVFGFDIQKEAIESSTTRLKEKELFERTI 75 Query: 87 LFQATFSQLQDYVPDK---GVDGVVFDLGV 113 L + L +P+ V G +F+LG Sbjct: 76 LVHDSHDTLLSVLPEDAKGKVTGAIFNLGY 105 >gi|228941931|ref|ZP_04104475.1| hypothetical protein bthur0008_45660 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228961019|ref|ZP_04122647.1| hypothetical protein bthur0005_44710 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228974862|ref|ZP_04135424.1| hypothetical protein bthur0003_46130 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981455|ref|ZP_04141753.1| hypothetical protein bthur0002_46160 [Bacillus thuringiensis Bt407] gi|228778280|gb|EEM26549.1| hypothetical protein bthur0002_46160 [Bacillus thuringiensis Bt407] gi|228784866|gb|EEM32883.1| hypothetical protein bthur0003_46130 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228798652|gb|EEM45637.1| hypothetical protein bthur0005_44710 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228817764|gb|EEM63845.1| hypothetical protein bthur0008_45660 [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 177 Score = 46.7 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 10/90 (11%) Query: 33 NPAPGKVILDATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFS 86 G +DAT G G+ V D A+ +++ + E+ Sbjct: 4 AVKEGDYAVDATLGN-GHDTCFLAEIVGDNGKVFGFDIQKEAIESSTTRLKEKELFERTV 62 Query: 87 LFQATFSQLQDYVPDK---GVDGVVFDLGV 113 L + L +P+ V G +F+LG Sbjct: 63 LVHDSHDTLLSVLPEDAKGKVTGAIFNLGY 92 >gi|228923508|ref|ZP_04086790.1| hypothetical protein bthur0011_44850 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228836146|gb|EEM81505.1| hypothetical protein bthur0011_44850 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 177 Score = 46.7 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 10/90 (11%) Query: 33 NPAPGKVILDATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFS 86 G +DAT G G+ V D A+ +++ + E+ Sbjct: 4 AVKEGDYAVDATLGN-GHDTCFLAEIVGDNGKVFGFDIQKEAIESSTTRLKEKELFERTV 62 Query: 87 LFQATFSQLQDYVPD---KGVDGVVFDLGV 113 L + L +P+ V G +F+LG Sbjct: 63 LVHDSHDTLLSVLPEGAKGKVTGAIFNLGY 92 >gi|153854162|ref|ZP_01995470.1| hypothetical protein DORLON_01461 [Dorea longicatena DSM 13814] gi|149753211|gb|EDM63142.1| hypothetical protein DORLON_01461 [Dorea longicatena DSM 13814] Length = 190 Score = 46.7 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 36/93 (38%), Gaps = 6/93 (6%) Query: 26 EKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDYK 82 ++I G +DAT G G + C++ V+A D A+ +E ++ + Sbjct: 14 HEIIRSQA-EEGGYYIDATMGKGNDTLFLCELAGEKGKVLAFDIQQEALDVTKELLKTHG 72 Query: 83 E--QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + Q L + Y + D + F+ G Sbjct: 73 KEMQAELILDGHEHMDRYAGKESADVICFNFGY 105 >gi|159477717|ref|XP_001696955.1| rRNA methylase [Chlamydomonas reinhardtii] gi|158274867|gb|EDP00647.1| rRNA methylase [Chlamydomonas reinhardtii] Length = 293 Score = 46.7 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 10/88 (11%) Query: 35 APGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETM-----RDYKEQF 85 PG +DAT G G+ F +VI D A + +E + + + + Sbjct: 111 RPGDTAVDATMGN-GHDTLFLAQAVGPTGHVIGFDIQEAATASTRERLESHLSAEVRPRL 169 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGV 113 SL A S+LQ+ V F+LG Sbjct: 170 SLHTACHSRLQELAGSGRARVVAFNLGY 197 >gi|224476851|ref|YP_002634457.1| hypothetical protein Sca_1368 [Staphylococcus carnosus subsp. carnosus TM300] gi|222421458|emb|CAL28272.1| conserved hypothetical protein [Staphylococcus carnosus subsp. carnosus TM300] Length = 185 Score = 46.7 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 30/85 (35%), Gaps = 7/85 (8%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDYKEQFSLFQA 90 ++DAT G G+ F V D A+ Q +RD L Sbjct: 18 INESSTVIDATCGN-GHDTLFLAEHVPNGKVYGFDIQEEAIKAAQLKVRDL-NNTILIHD 75 Query: 91 TFSQLQDYVP--DKGVDGVVFDLGV 113 ++ Y+ D VD +F+LG Sbjct: 76 GHENIEQYIESNDYPVDAAIFNLGY 100 >gi|118479881|ref|YP_897032.1| SAM-dependent methyltransferase [Bacillus thuringiensis str. Al Hakam] gi|196043789|ref|ZP_03111026.1| conserved hypothetical protein [Bacillus cereus 03BB108] gi|225866741|ref|YP_002752119.1| hypothetical protein BCA_4875 [Bacillus cereus 03BB102] gi|118419106|gb|ABK87525.1| SAM-dependent methyltransferase, MraW methylase family [Bacillus thuringiensis str. Al Hakam] gi|196025125|gb|EDX63795.1| conserved hypothetical protein [Bacillus cereus 03BB108] gi|225787347|gb|ACO27564.1| conserved hypothetical protein [Bacillus cereus 03BB102] Length = 190 Score = 46.7 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 10/90 (11%) Query: 33 NPAPGKVILDATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFS 86 G +DAT G G+ V D A+ +++ + E+ Sbjct: 17 AVKEGDYAVDATLGN-GHDTCFLAEIVGNNGKVFGFDIQKEAIESSTTRLKEKELFERTV 75 Query: 87 LFQATFSQLQDYVPDK---GVDGVVFDLGV 113 L + L +P+ V G +F+LG Sbjct: 76 LVHDSHDTLLSVLPEDAKGKVTGAIFNLGY 105 >gi|116492413|ref|YP_804148.1| SAM-dependent methyltransferase [Pediococcus pentosaceus ATCC 25745] gi|116102563|gb|ABJ67706.1| SAM-dependent methyltransferase [Pediococcus pentosaceus ATCC 25745] Length = 187 Score = 46.7 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 14/97 (14%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMR 79 LL +++ PG V++DAT G G+ F V + D A+ + Sbjct: 12 LLTEIV-----QPGDVVIDATMGN-GHDTLFLSELVQSTGRVFSFDVQKAALEQTRALFE 65 Query: 80 DYKE---QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + L A+ Q+ YV + + G +F+LG Sbjct: 66 HQHQTLINVELIHASHDQIDHYVTEP-ITGAIFNLGY 101 >gi|228988006|ref|ZP_04148110.1| hypothetical protein bthur0001_46710 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228771723|gb|EEM20185.1| hypothetical protein bthur0001_46710 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 177 Score = 46.7 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 10/90 (11%) Query: 33 NPAPGKVILDATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFS 86 G +DAT G G+ V D A+ +++ + E+ Sbjct: 4 AVKEGDYAVDATLGN-GHDTCFLAEIVGDNGKVFGFDIQKEAIESSTTRLKEKELFERTV 62 Query: 87 LFQATFSQLQDYVPDK---GVDGVVFDLGV 113 L + L +P+ V G +F+LG Sbjct: 63 LVHDSHDTLLSVLPEDAKGKVTGAIFNLGY 92 >gi|229141487|ref|ZP_04270023.1| hypothetical protein bcere0013_45810 [Bacillus cereus BDRD-ST26] gi|229199766|ref|ZP_04326385.1| hypothetical protein bcere0001_52280 [Bacillus cereus m1293] gi|228583706|gb|EEK41905.1| hypothetical protein bcere0001_52280 [Bacillus cereus m1293] gi|228641972|gb|EEK98267.1| hypothetical protein bcere0013_45810 [Bacillus cereus BDRD-ST26] Length = 177 Score = 46.7 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 10/90 (11%) Query: 33 NPAPGKVILDATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFS 86 G +DAT G G+ V D A+ +++ + E+ Sbjct: 4 AVKEGDYAVDATLGN-GHDTCFLAEIVGDNGKVFGFDIQKEAIESSTTRLKEKELFERTV 62 Query: 87 LFQATFSQLQDYVPDK---GVDGVVFDLGV 113 L + L +P+ V G +F+LG Sbjct: 63 LVHDSHDTLLSVLPEDAKGKVTGAIFNLGY 92 >gi|52140754|ref|YP_086075.1| SAM-dependent methyltransferase [Bacillus cereus E33L] gi|51974223|gb|AAU15773.1| SAM-dependent methyltransferase, MraW methylase family [Bacillus cereus E33L] Length = 190 Score = 46.7 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 10/90 (11%) Query: 33 NPAPGKVILDATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFS 86 G +DAT G G+ V D A+ +++ + E+ Sbjct: 17 AVKEGDYAVDATLGN-GHDTCFLAEIIGDNGKVFGFDIQKEAIESSTTRLKEKELFERTV 75 Query: 87 LFQATFSQLQDYVPDK---GVDGVVFDLGV 113 L + L +P+ V G +F+LG Sbjct: 76 LVHDSHDTLLSVLPEDAKGKVTGAIFNLGY 105 >gi|148236727|ref|NP_001085693.1| trimethylguanosine synthase 1 [Xenopus laevis] gi|49119211|gb|AAH73206.1| MGC80481 protein [Xenopus laevis] Length = 837 Score = 46.3 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 2/69 (2%) Query: 38 KVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQL 95 +++DA G GG + F K G+ VIA+D DP + + Y +Q F L Sbjct: 681 GLVVDAFCGVGGNAIQFAKAGNRVIAVDIDPAKLDFARNNAEVYGVTDQIEFILGDFMVL 740 Query: 96 QDYVPDKGV 104 + + Sbjct: 741 APALKADAI 749 >gi|55823549|ref|YP_141990.1| rRNA methylase [Streptococcus thermophilus CNRZ1066] gi|55739534|gb|AAV63175.1| rRNA methylase (SAM-dependent methyltransferase superfamily), putative [Streptococcus thermophilus CNRZ1066] Length = 182 Score = 46.3 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 7/90 (7%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-E 83 L +V+ +++DAT G G + + V A D A+ + + D E Sbjct: 13 LAEVLD-----DESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQAIGKTSQRLSDLGIE 67 Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 L L YV + + +F+LG Sbjct: 68 NTELILDGHENLDHYVREP-IRAAIFNLGY 96 >gi|302756219|ref|XP_002961533.1| hypothetical protein SELMODRAFT_76241 [Selaginella moellendorffii] gi|300170192|gb|EFJ36793.1| hypothetical protein SELMODRAFT_76241 [Selaginella moellendorffii] Length = 205 Score = 46.3 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 37/101 (36%), Gaps = 14/101 (13%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96 V++DA G GG + F +VIA+D+DP ++ + Y + F QL Sbjct: 45 VVIDAFAGVGGNTIQFALRSEHVIAIDKDPMKIAYARHNAEIYGVSHRIDFVVGDFFQLA 104 Query: 97 DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 + D+ S + + K D+ M Sbjct: 105 PSLK--------ADVIFLSPPWGGPE----YLKDTSYDISM 133 >gi|302775726|ref|XP_002971280.1| hypothetical protein SELMODRAFT_95290 [Selaginella moellendorffii] gi|300161262|gb|EFJ27878.1| hypothetical protein SELMODRAFT_95290 [Selaginella moellendorffii] Length = 205 Score = 46.3 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 37/101 (36%), Gaps = 14/101 (13%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96 V++DA G GG + F +VIA+D+DP ++ + Y + F QL Sbjct: 47 VVIDAFAGVGGNTIQFALRSEHVIAIDKDPMKIAYARHNAEIYGVSHRIDFVVGDFFQLA 106 Query: 97 DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 + D+ S + + K D+ M Sbjct: 107 PSLK--------ADVIFLSPPWGGPE----YLKDTSYDISM 135 >gi|37528514|ref|NP_931859.1| 16S rRNA methyltransferase B [Photorhabdus luminescens subsp. laumondii TTO1] gi|46396778|sp|Q7MYI0|RSMB_PHOLL RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|36787952|emb|CAE17069.1| RsmB protein (SUN/FMU protein), 16S RNA m5C967 methyltransferase [Photorhabdus luminescens subsp. laumondii TTO1] Length = 429 Score = 46.3 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 38/91 (41%), Gaps = 2/91 (2%) Query: 26 EKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKE 83 ++ + LL P G+ ILD GG + ++ V+A+D D + +E ++ Sbjct: 236 QECVELLKPINGEKILDLCAAPGGKTTYILEIAPESQVVAVDIDEQRIKRVKENLKRLNC 295 Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 ++ + + ++ D ++ D S Sbjct: 296 HATVKTGDGRHPEHWAENQQFDRILLDAPCS 326 >gi|323496958|ref|ZP_08101986.1| 16S rRNA methyltransferase B [Vibrio sinaloensis DSM 21326] gi|323318032|gb|EGA71015.1| 16S rRNA methyltransferase B [Vibrio sinaloensis DSM 21326] Length = 426 Score = 46.3 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 35/89 (39%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQF 85 + L P G++ILD GG + + + V+A+D D + + + + + Sbjct: 235 SVNYLQPQDGELILDCCAAPGGKTAHILEHTEDTEVVAIDCDVKRLDRVYDNLERLQLRA 294 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + Q++ + D ++ D S Sbjct: 295 DVICGDARYPQEWWSGEKFDRILLDAPCS 323 >gi|170724406|ref|YP_001758432.1| sun protein [Shewanella woodyi ATCC 51908] gi|169809753|gb|ACA84337.1| sun protein [Shewanella woodyi ATCC 51908] Length = 425 Score = 46.3 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 1/85 (1%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQETMRDYKEQFSLFQ 89 LL PA G++ILDA GG + + + ++A+D D + Q+ + L Sbjct: 235 LLAPADGELILDACAAPGGKTCHILERADTELVAVDFDANRLERVQQNLDRLSLNAKLVH 294 Query: 90 ATFSQLQDYVPDKGVDGVVFDLGVS 114 + + + D ++ D S Sbjct: 295 GDAADIDSWWQGDKFDRILLDAPCS 319 >gi|55379714|ref|YP_137564.1| ubiquinone/menaquinone biosynthesis methyltransferase [Haloarcula marismortui ATCC 43049] gi|55232439|gb|AAV47858.1| ubiquinone/menaquinone biosynthesis methyltransferase [Haloarcula marismortui ATCC 43049] Length = 206 Score = 46.3 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 3/84 (3%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83 + ++ IA+L+ +P +LD G G + + V LD+ P +S E + + Sbjct: 33 MRDEAIAMLDLSPDDKVLDVGCGTGFATEGLLEHVDTVYGLDQSPHQLSKAFEKFGKFGD 92 Query: 84 QFSLFQATFSQLQDYVPDKGVDGV 107 +L D D V Sbjct: 93 -VRYHLGDAERLP--FKDDSFDAV 113 >gi|326942536|gb|AEA18432.1| SAM-dependent methyltransferase [Bacillus thuringiensis serovar chinensis CT-43] Length = 190 Score = 46.3 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 10/90 (11%) Query: 33 NPAPGKVILDATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFS 86 G +DAT G G+ V D A+ +++ + E+ Sbjct: 17 AVKEGDYAVDATLGN-GHDTCFLAEIVGDNGKVFGFDIQKEAIESSTTRLKEKELFERTV 75 Query: 87 LFQATFSQLQDYVPDK---GVDGVVFDLGV 113 L + L +P+ V G +F+LG Sbjct: 76 LVHDSHDTLLSVLPEDAKGKVTGAIFNLGY 105 >gi|163751682|ref|ZP_02158901.1| sun protein [Shewanella benthica KT99] gi|161328421|gb|EDP99577.1| sun protein [Shewanella benthica KT99] Length = 425 Score = 46.3 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 36/85 (42%), Gaps = 1/85 (1%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSLFQ 89 LL P G++ILDA GG + ++ + ++A+D D + Q+ + + L Sbjct: 235 LLAPKDGELILDACAAPGGKTCHLLELANIELVAVDFDEKRLERVQQNLDRLSLKAKLVH 294 Query: 90 ATFSQLQDYVPDKGVDGVVFDLGVS 114 + + + D ++ D S Sbjct: 295 GDAADIDSWWQGDKFDRILLDAPCS 319 >gi|261379857|ref|ZP_05984430.1| putative rRNA methylase [Neisseria subflava NJ9703] gi|284797554|gb|EFC52901.1| putative rRNA methylase [Neisseria subflava NJ9703] Length = 189 Score = 46.3 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 33/184 (17%), Positives = 55/184 (29%), Gaps = 32/184 (17%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMR 79 LL++ + G LDAT G G+ V A D A++ Q ++ Sbjct: 13 LLQQAL-----KAGGRALDATAGN-GHDTLLLAQSVGETGRVWAFDVQLKALAQTQGRLK 66 Query: 80 D--YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV-------SSMQIDCGDR----GFS 126 + + +L L Y+ + +D VF+ G + + R Sbjct: 67 ENGVDGRVALIHDGHENLLSYIDEP-LDAAVFNFGWLPGGDKSCTTEAASSIRALTDTLG 125 Query: 127 FQKSGPLDMRMSCSGISAS--------DVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178 K G L + + G A + + + A AI K Sbjct: 126 LLKEGGLAVAVLYPGHEAGRIEAEAIVQWTETLPQEAFAVLRYGFVNRRNAPPYLLAIEK 185 Query: 179 RRQS 182 RQ Sbjct: 186 LRQK 189 >gi|301056259|ref|YP_003794470.1| MraW methylase family protein [Bacillus anthracis CI] gi|300378428|gb|ADK07332.1| SAM-dependent methyltransferase, MraW methylase family [Bacillus cereus biovar anthracis str. CI] Length = 190 Score = 46.3 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 10/90 (11%) Query: 33 NPAPGKVILDATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFS 86 G +DAT G G+ V D A+ +++ + E+ Sbjct: 17 AVKEGDYAVDATLGN-GHDTCFLAEIVGDNGKVFGFDIQKEAIESSTTRLKEKELFERTV 75 Query: 87 LFQATFSQLQDYVPDK---GVDGVVFDLGV 113 L + L +P+ V G +F+LG Sbjct: 76 LVHDSHDTLLSVLPEDAKGKVTGAIFNLGY 105 >gi|299538430|ref|ZP_07051713.1| hypothetical protein BFZC1_20568 [Lysinibacillus fusiformis ZC1] gi|298726017|gb|EFI66609.1| hypothetical protein BFZC1_20568 [Lysinibacillus fusiformis ZC1] Length = 246 Score = 46.3 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 3/90 (3%) Query: 20 HVPVLLEKVI-ALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETM 78 H VLL I +LL G+ +LDA G G SR K G+ V A+D + E Sbjct: 28 HRVVLLNPSIFSLLGEVDGRHLLDAGCGEGYLSRLLVKKGARVTAVDFSQKMLDIAMERT 87 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVDGVV 108 + +E + ++ D+ DG+V Sbjct: 88 QQ-QEAIQFLHGNCENI-SFLADEQFDGIV 115 >gi|295113991|emb|CBL32628.1| Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Enterococcus sp. 7L76] Length = 187 Score = 46.3 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 13/97 (13%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMR 79 LL++V+ PG ++DAT G G+ +F V A D A+ ++ + Sbjct: 12 LLKEVVE-----PGDFVIDATMGN-GHDTAFLAELVGSSGEVFAFDIQKEALINTEQKLT 65 Query: 80 DYK--EQFSLFQATFSQLQDYV-PDKGVDGVVFDLGV 113 + Q +LF L + + + +F+LG Sbjct: 66 ELNLLPQTTLFPLGHEHLHAVLDEETEITAAIFNLGY 102 >gi|257415363|ref|ZP_05592357.1| SAM-dependent methyltransferase [Enterococcus faecalis AR01/DG] gi|257157191|gb|EEU87151.1| SAM-dependent methyltransferase [Enterococcus faecalis ARO1/DG] gi|315170873|gb|EFU14890.1| rRNA methylase family protein [Enterococcus faecalis TX1342] Length = 187 Score = 46.3 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 13/97 (13%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMR 79 LL++V+ PG ++DAT G G+ +F V A D A+ ++ + Sbjct: 12 LLKEVVE-----PGDFVIDATMGN-GHDTAFLAELVGPSGEVFAFDIQKEALINTEQKLT 65 Query: 80 DYK--EQFSLFQATFSQLQDYV-PDKGVDGVVFDLGV 113 + Q +LF L + + + +F+LG Sbjct: 66 ELNLLPQTTLFPLGHEHLHAVLDEETEITAAIFNLGY 102 >gi|229546650|ref|ZP_04435375.1| rRNA methylase [Enterococcus faecalis TX1322] gi|256854344|ref|ZP_05559708.1| SAM-dependent methyltransferase [Enterococcus faecalis T8] gi|307276225|ref|ZP_07557354.1| rRNA methylase family protein [Enterococcus faecalis TX2134] gi|307296183|ref|ZP_07576012.1| rRNA methylase family protein [Enterococcus faecalis TX0411] gi|229308217|gb|EEN74204.1| rRNA methylase [Enterococcus faecalis TX1322] gi|256709904|gb|EEU24948.1| SAM-dependent methyltransferase [Enterococcus faecalis T8] gi|306496114|gb|EFM65695.1| rRNA methylase family protein [Enterococcus faecalis TX0411] gi|306507081|gb|EFM76222.1| rRNA methylase family protein [Enterococcus faecalis TX2134] gi|315029896|gb|EFT41828.1| rRNA methylase family protein [Enterococcus faecalis TX4000] gi|315159950|gb|EFU03967.1| rRNA methylase family protein [Enterococcus faecalis TX0312] gi|323479986|gb|ADX79425.1| rRNA methylase family protein [Enterococcus faecalis 62] Length = 187 Score = 46.3 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 13/97 (13%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMR 79 LL++V+ PG ++DAT G G+ +F V A D A+ ++ + Sbjct: 12 LLKEVVE-----PGDFVIDATMGN-GHDTAFLAELVGPSGEVFAFDIQKEALINTEQKLT 65 Query: 80 DYK--EQFSLFQATFSQLQDYV-PDKGVDGVVFDLGV 113 + Q +LF L + + + +F+LG Sbjct: 66 ELNLLPQTTLFPLGHEHLHAVLDEETEITAAIFNLGY 102 >gi|229548736|ref|ZP_04437461.1| rRNA methylase [Enterococcus faecalis ATCC 29200] gi|255971252|ref|ZP_05421838.1| SAM-dependent methyltransferase [Enterococcus faecalis T1] gi|255973871|ref|ZP_05424457.1| SAM-dependent methyltransferase [Enterococcus faecalis T2] gi|256617679|ref|ZP_05474525.1| SAM-dependent methyltransferase [Enterococcus faecalis ATCC 4200] gi|256761557|ref|ZP_05502137.1| SAM-dependent methyltransferase [Enterococcus faecalis T3] gi|256957340|ref|ZP_05561511.1| SAM-dependent methyltransferase [Enterococcus faecalis DS5] gi|256964373|ref|ZP_05568544.1| SAM-dependent methyltransferase [Enterococcus faecalis HIP11704] gi|257077664|ref|ZP_05572025.1| SAM-dependent methyltransferase [Enterococcus faecalis JH1] gi|257081052|ref|ZP_05575413.1| SAM-dependent methyltransferase [Enterococcus faecalis E1Sol] gi|257083713|ref|ZP_05578074.1| SAM-dependent methyltransferase [Enterococcus faecalis Fly1] gi|257086149|ref|ZP_05580510.1| SAM-dependent methyltransferase [Enterococcus faecalis D6] gi|257089221|ref|ZP_05583582.1| SAM-dependent methyltransferase [Enterococcus faecalis CH188] gi|257421046|ref|ZP_05598036.1| SAM-dependent methyltransferase [Enterococcus faecalis X98] gi|294779821|ref|ZP_06745207.1| conserved hypothetical protein [Enterococcus faecalis PC1.1] gi|307270146|ref|ZP_07551463.1| rRNA methylase family protein [Enterococcus faecalis TX4248] gi|307271402|ref|ZP_07552677.1| rRNA methylase family protein [Enterococcus faecalis TX0855] gi|307284441|ref|ZP_07564604.1| rRNA methylase family protein [Enterococcus faecalis TX0860] gi|307289509|ref|ZP_07569455.1| rRNA methylase family protein [Enterococcus faecalis TX0109] gi|312901667|ref|ZP_07760937.1| rRNA methylase family protein [Enterococcus faecalis TX0470] gi|312904994|ref|ZP_07764129.1| rRNA methylase family protein [Enterococcus faecalis TX0635] gi|312951836|ref|ZP_07770726.1| rRNA methylase family protein [Enterococcus faecalis TX0102] gi|229306129|gb|EEN72125.1| rRNA methylase [Enterococcus faecalis ATCC 29200] gi|255962270|gb|EET94746.1| SAM-dependent methyltransferase [Enterococcus faecalis T1] gi|255966743|gb|EET97365.1| SAM-dependent methyltransferase [Enterococcus faecalis T2] gi|256597206|gb|EEU16382.1| SAM-dependent methyltransferase [Enterococcus faecalis ATCC 4200] gi|256682808|gb|EEU22503.1| SAM-dependent methyltransferase [Enterococcus faecalis T3] gi|256947836|gb|EEU64468.1| SAM-dependent methyltransferase [Enterococcus faecalis DS5] gi|256954869|gb|EEU71501.1| SAM-dependent methyltransferase [Enterococcus faecalis HIP11704] gi|256985694|gb|EEU72996.1| SAM-dependent methyltransferase [Enterococcus faecalis JH1] gi|256989082|gb|EEU76384.1| SAM-dependent methyltransferase [Enterococcus faecalis E1Sol] gi|256991743|gb|EEU79045.1| SAM-dependent methyltransferase [Enterococcus faecalis Fly1] gi|256994179|gb|EEU81481.1| SAM-dependent methyltransferase [Enterococcus faecalis D6] gi|256998033|gb|EEU84553.1| SAM-dependent methyltransferase [Enterococcus faecalis CH188] gi|257162870|gb|EEU92830.1| SAM-dependent methyltransferase [Enterococcus faecalis X98] gi|294453095|gb|EFG21511.1| conserved hypothetical protein [Enterococcus faecalis PC1.1] gi|306499527|gb|EFM68898.1| rRNA methylase family protein [Enterococcus faecalis TX0109] gi|306503249|gb|EFM72502.1| rRNA methylase family protein [Enterococcus faecalis TX0860] gi|306511934|gb|EFM80929.1| rRNA methylase family protein [Enterococcus faecalis TX0855] gi|306513515|gb|EFM82130.1| rRNA methylase family protein [Enterococcus faecalis TX4248] gi|310630187|gb|EFQ13470.1| rRNA methylase family protein [Enterococcus faecalis TX0102] gi|310631690|gb|EFQ14973.1| rRNA methylase family protein [Enterococcus faecalis TX0635] gi|311291278|gb|EFQ69834.1| rRNA methylase family protein [Enterococcus faecalis TX0470] gi|315027553|gb|EFT39485.1| rRNA methylase family protein [Enterococcus faecalis TX2137] gi|315031264|gb|EFT43196.1| rRNA methylase family protein [Enterococcus faecalis TX0017] gi|315035316|gb|EFT47248.1| rRNA methylase family protein [Enterococcus faecalis TX0027] gi|315153165|gb|EFT97181.1| rRNA methylase family protein [Enterococcus faecalis TX0031] gi|315154866|gb|EFT98882.1| rRNA methylase family protein [Enterococcus faecalis TX0043] gi|315164614|gb|EFU08631.1| rRNA methylase family protein [Enterococcus faecalis TX1302] gi|315578129|gb|EFU90320.1| rRNA methylase family protein [Enterococcus faecalis TX0630] gi|327534381|gb|AEA93215.1| rRNA methylase [Enterococcus faecalis OG1RF] gi|329577652|gb|EGG59082.1| putative rRNA methylase [Enterococcus faecalis TX1467] Length = 187 Score = 46.3 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 13/97 (13%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMR 79 LL++V+ PG ++DAT G G+ +F V A D A+ ++ + Sbjct: 12 LLKEVVE-----PGDFVIDATMGN-GHDTAFLAELVGPSGEVFAFDIQKEALINTEQKLT 65 Query: 80 DYK--EQFSLFQATFSQLQDYV-PDKGVDGVVFDLGV 113 + Q +LF L + + + +F+LG Sbjct: 66 ELNLLPQTTLFPLGHEHLHAVLDEETEITAAIFNLGY 102 >gi|254507306|ref|ZP_05119442.1| ribosomal RNA small subunit methyltransferase B [Vibrio parahaemolyticus 16] gi|219549766|gb|EED26755.1| ribosomal RNA small subunit methyltransferase B [Vibrio parahaemolyticus 16] Length = 426 Score = 46.3 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 35/89 (39%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQF 85 + L P G++ILD GG + + + V+A+D D + + + + + Sbjct: 235 SVNYLQPQNGELILDCCAAPGGKTAHILEHTEDTEVVAIDCDAKRLDRVYDNLERLQLRA 294 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + Q++ + D ++ D S Sbjct: 295 DVICGDARYPQEWWSGEKFDRILLDAPCS 323 >gi|29375384|ref|NP_814538.1| hypothetical protein EF0794 [Enterococcus faecalis V583] gi|227517764|ref|ZP_03947813.1| rRNA methylase [Enterococcus faecalis TX0104] gi|227554910|ref|ZP_03984957.1| rRNA methylase [Enterococcus faecalis HH22] gi|256959922|ref|ZP_05564093.1| SAM-dependent methyltransferase [Enterococcus faecalis Merz96] gi|293385211|ref|ZP_06631028.1| putative rRNA methylase [Enterococcus faecalis R712] gi|293388325|ref|ZP_06632838.1| putative rRNA methylase [Enterococcus faecalis S613] gi|300859754|ref|ZP_07105842.1| putative rRNA methylase [Enterococcus faecalis TUSoD Ef11] gi|312907134|ref|ZP_07766126.1| rRNA methylase family protein [Enterococcus faecalis DAPTO 512] gi|312979287|ref|ZP_07790986.1| rRNA methylase family protein [Enterococcus faecalis DAPTO 516] gi|29342844|gb|AAO80608.1| conserved hypothetical protein [Enterococcus faecalis V583] gi|227074787|gb|EEI12750.1| rRNA methylase [Enterococcus faecalis TX0104] gi|227175966|gb|EEI56938.1| rRNA methylase [Enterococcus faecalis HH22] gi|256950418|gb|EEU67050.1| SAM-dependent methyltransferase [Enterococcus faecalis Merz96] gi|291077508|gb|EFE14872.1| putative rRNA methylase [Enterococcus faecalis R712] gi|291082293|gb|EFE19256.1| putative rRNA methylase [Enterococcus faecalis S613] gi|300850572|gb|EFK78321.1| putative rRNA methylase [Enterococcus faecalis TUSoD Ef11] gi|310626845|gb|EFQ10128.1| rRNA methylase family protein [Enterococcus faecalis DAPTO 512] gi|311287945|gb|EFQ66501.1| rRNA methylase family protein [Enterococcus faecalis DAPTO 516] gi|315145295|gb|EFT89311.1| rRNA methylase family protein [Enterococcus faecalis TX2141] gi|315151636|gb|EFT95652.1| rRNA methylase family protein [Enterococcus faecalis TX0012] gi|315161913|gb|EFU05930.1| rRNA methylase family protein [Enterococcus faecalis TX0645] gi|315174703|gb|EFU18720.1| rRNA methylase family protein [Enterococcus faecalis TX1346] gi|315573416|gb|EFU85607.1| rRNA methylase family protein [Enterococcus faecalis TX0309B] gi|315581334|gb|EFU93525.1| rRNA methylase family protein [Enterococcus faecalis TX0309A] Length = 187 Score = 46.3 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 13/97 (13%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMR 79 LL++V+ PG ++DAT G G+ +F V A D A+ ++ + Sbjct: 12 LLKEVVE-----PGDFVIDATMGN-GHDTAFLAELVGPSGEVFAFDIQKEALINTEQKLT 65 Query: 80 DYK--EQFSLFQATFSQLQDYV-PDKGVDGVVFDLGV 113 + Q +LF L + + + +F+LG Sbjct: 66 ELNLLPQTTLFPLGHEHLHAVLDEETEITAAIFNLGY 102 >gi|196032979|ref|ZP_03100392.1| conserved hypothetical protein [Bacillus cereus W] gi|195994408|gb|EDX58363.1| conserved hypothetical protein [Bacillus cereus W] Length = 190 Score = 46.3 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 10/90 (11%) Query: 33 NPAPGKVILDATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFS 86 G +DAT G G+ V D A+ +++ + E+ Sbjct: 17 AVKEGDYAVDATLGN-GHDTCFLAEIVGDNGKVFGFDIQKEAIESSTTRLKEKELFERTV 75 Query: 87 LFQATFSQLQDYVPDK---GVDGVVFDLGV 113 L + L +P+ V G +F+LG Sbjct: 76 LVHDSHDTLLSVLPEDAKGKVTGAIFNLGY 105 >gi|206977282|ref|ZP_03238179.1| conserved hypothetical protein [Bacillus cereus H3081.97] gi|217962239|ref|YP_002340809.1| hypothetical protein BCAH187_A4886 [Bacillus cereus AH187] gi|222098222|ref|YP_002532279.1| sam-dependent methyltransferase, mraw methylase family [Bacillus cereus Q1] gi|206744433|gb|EDZ55843.1| conserved hypothetical protein [Bacillus cereus H3081.97] gi|217065440|gb|ACJ79690.1| conserved hypothetical protein [Bacillus cereus AH187] gi|221242280|gb|ACM14990.1| SAM-dependent methyltransferase, MraW methylase family [Bacillus cereus Q1] Length = 190 Score = 46.3 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 10/90 (11%) Query: 33 NPAPGKVILDATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFS 86 G +DAT G G+ V D A+ +++ + E+ Sbjct: 17 AVKEGDYAVDATLGN-GHDTCFLAEIVGDNGKVFGFDIQKEAIESSTTRLKEKELFERTV 75 Query: 87 LFQATFSQLQDYVPDK---GVDGVVFDLGV 113 L + L +P+ V G +F+LG Sbjct: 76 LVHDSHDTLLSVLPEDAKGKVTGAIFNLGY 105 >gi|49476826|ref|YP_038794.1| SAM-dependent methyltransferase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|296505217|ref|YP_003666917.1| SAM-dependent methyltransferase [Bacillus thuringiensis BMB171] gi|49328382|gb|AAT59028.1| SAM-dependent methyltransferase, MraW methylase family [Bacillus thuringiensis serovar konkukian str. 97-27] gi|296326269|gb|ADH09197.1| SAM-dependent methyltransferase [Bacillus thuringiensis BMB171] Length = 190 Score = 46.3 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 10/90 (11%) Query: 33 NPAPGKVILDATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFS 86 G +DAT G G+ V D A+ +++ + E+ Sbjct: 17 AVKEGDYAVDATLGN-GHDTCFLAEIVGDNGKVFGFDIQKEAIESSTTRLKEKELFERTV 75 Query: 87 LFQATFSQLQDYVPDK---GVDGVVFDLGV 113 L + L +P+ V G +F+LG Sbjct: 76 LVHDSHDTLLSVLPEDAKGKVTGAIFNLGY 105 >gi|47565176|ref|ZP_00236219.1| SAM-dependent methyltransferase [Bacillus cereus G9241] gi|47557962|gb|EAL16287.1| SAM-dependent methyltransferase [Bacillus cereus G9241] Length = 190 Score = 46.3 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 10/90 (11%) Query: 33 NPAPGKVILDATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFS 86 G +DAT G G+ V D A+ +++ + E+ Sbjct: 17 AVKEGDYAVDATLGN-GHDTCFLAEIVGDNGKVFGFDIQKEAIESSTTRLKEKELFERTV 75 Query: 87 LFQATFSQLQDYVPDK---GVDGVVFDLGV 113 L + L +P+ V G +F+LG Sbjct: 76 LVHDSHDTLLSVLPEDAKGKVTGAIFNLGY 105 >gi|308174723|ref|YP_003921428.1| RNA methylase [Bacillus amyloliquefaciens DSM 7] gi|307607587|emb|CBI43958.1| putative RNA methylase [Bacillus amyloliquefaciens DSM 7] gi|328554653|gb|AEB25145.1| RNA methylase [Bacillus amyloliquefaciens TA208] gi|328913062|gb|AEB64658.1| putative RNA methylase [Bacillus amyloliquefaciens LL3] Length = 193 Score = 46.3 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 9/87 (10%) Query: 35 APGKVILDATFGAGGYSRSFCK----MGSNVIALDRDPFAVSCGQETMRDY-KEQFSLFQ 89 G + +DAT G G+ F +V A D A++ +E + D + +L Sbjct: 19 QEGDITVDATMGN-GHDTYFLAGLVGETGHVHAFDIQADALAKTKERLGDALSPRVTLHH 77 Query: 90 ATFSQLQDYVPDKG---VDGVVFDLGV 113 + Q++ +P+ V VF+LG Sbjct: 78 KSHDQIKASLPEDAHGRVACAVFNLGY 104 >gi|56421381|ref|YP_148699.1| hypothetical protein GK2846 [Geobacillus kaustophilus HTA426] gi|56381223|dbj|BAD77131.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426] Length = 195 Score = 45.9 bits (108), Expect = 0.008, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 43/99 (43%), Gaps = 15/99 (15%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGY-SRSFCKM---GSNVIALDRDPFAVSCGQETMR 79 LL++ + G + +DAT G G+ + + +V D A++ + Sbjct: 13 LLDQAVN-----EGDIAVDATVGN-GHDTVYLAQRVGDFGHVFGFDIQSEAITAASARLA 66 Query: 80 DYK--EQFSLFQATFSQLQDYVPDK---GVDGVVFDLGV 113 + + +LF+ + S+L + +P + G VF+LG Sbjct: 67 KHGLCGRATLFERSHSELLEALPADVHGRIAGAVFNLGY 105 >gi|162447114|ref|YP_001620246.1| methyltransferase [Acholeplasma laidlawii PG-8A] gi|161985221|gb|ABX80870.1| methyltransferase [Acholeplasma laidlawii PG-8A] Length = 174 Score = 45.9 bits (108), Expect = 0.008, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 5/81 (6%) Query: 34 PAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATF 92 P I+DAT G G+ + +V A D A+ + +D + + + Sbjct: 18 IKPHMTIVDATCGN-GHDTLFLASRVEHVHAFDIQQEALDNTRSLTKDL-DNITYHHTSH 75 Query: 93 SQLQDYVPDKGVDGVVFDLGV 113 + + + DGV+F+LG Sbjct: 76 EHITKLISNY--DGVIFNLGY 94 >gi|270291587|ref|ZP_06197807.1| SAM-dependent methyltransferase [Pediococcus acidilactici 7_4] gi|270279906|gb|EFA25744.1| SAM-dependent methyltransferase [Pediococcus acidilactici 7_4] Length = 187 Score = 45.9 bits (108), Expect = 0.008, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 14/97 (14%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFC----KMGSNVIALDRDPFAVSCGQETMR 79 LL +V+ PG ++DAT G G+ F + V + D A+S + + Sbjct: 12 LLAEVV-----QPGDHVVDATMGN-GHDTLFLANLVQSQGRVFSFDIQTAALSATEARLE 65 Query: 80 DYKE---QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 L Q + QL YV D + G VF+LG Sbjct: 66 KQLPDHQHVQLIQDSHDQLTQYV-DTPISGAVFNLGY 101 >gi|37681411|ref|NP_936020.1| sun protein [Vibrio vulnificus YJ016] gi|320154882|ref|YP_004187261.1| ribosomal RNA small subunit methyltransferase B [Vibrio vulnificus MO6-24/O] gi|46396771|sp|Q7MGK4|RSMB_VIBVY RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|37200163|dbj|BAC95991.1| sun protein [Vibrio vulnificus YJ016] gi|319930194|gb|ADV85058.1| ribosomal RNA small subunit methyltransferase B [Vibrio vulnificus MO6-24/O] Length = 426 Score = 45.9 bits (108), Expect = 0.008, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 2/87 (2%) Query: 30 ALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSL 87 L P G++ILD GG + + S V+ALD D + E ++ Q + Sbjct: 237 NYLQPKDGELILDCCAAPGGKTAHILERVSAREVVALDCDEQRLKRVTENLKRLNLQAKV 296 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGVS 114 + + + D ++ D S Sbjct: 297 ICGDARNPEQWWQGEQFDRILLDAPCS 323 >gi|27364478|ref|NP_760006.1| 16S rRNA methyltransferase B [Vibrio vulnificus CMCP6] gi|46396909|sp|Q8DDE5|RSMB_VIBVU RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|27360597|gb|AAO09533.1| ribosomal RNA small subunit methyltransferase B [Vibrio vulnificus CMCP6] Length = 426 Score = 45.9 bits (108), Expect = 0.008, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 2/87 (2%) Query: 30 ALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSL 87 L P G++ILD GG + + S V+ALD D + E ++ Q + Sbjct: 237 NYLQPKDGELILDCCAAPGGKTAHILERVSAREVVALDCDEQRLKRVTENLKRLNLQAKV 296 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGVS 114 + + + D ++ D S Sbjct: 297 ICGDARNPEQWWQGEQFDRILLDAPCS 323 >gi|153212957|ref|ZP_01948551.1| sun protein [Vibrio cholerae 1587] gi|153826427|ref|ZP_01979094.1| sun protein [Vibrio cholerae MZO-2] gi|124116183|gb|EAY35003.1| sun protein [Vibrio cholerae 1587] gi|149739813|gb|EDM54008.1| sun protein [Vibrio cholerae MZO-2] Length = 434 Score = 45.9 bits (108), Expect = 0.008, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQF 85 + L P G++ILD GG + + V+A+D D + +E ++ + Sbjct: 243 ALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLQLTA 302 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + Q + + D ++ D S Sbjct: 303 QVICGDARYPQQWWQGEQFDRILLDAPCS 331 >gi|297581922|ref|ZP_06943842.1| sun protein [Vibrio cholerae RC385] gi|297533789|gb|EFH72630.1| sun protein [Vibrio cholerae RC385] Length = 434 Score = 45.9 bits (108), Expect = 0.008, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQF 85 + L P G++ILD GG + + V+A+D D + +E ++ + Sbjct: 243 ALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLQLTA 302 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + Q + + D ++ D S Sbjct: 303 QVICGDARYPQQWWQGEQFDRILLDAPCS 331 >gi|261250606|ref|ZP_05943181.1| ribosomal RNA small subunit methyltransferase B [Vibrio orientalis CIP 102891] gi|260939175|gb|EEX95162.1| ribosomal RNA small subunit methyltransferase B [Vibrio orientalis CIP 102891] Length = 426 Score = 45.9 bits (108), Expect = 0.008, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 35/89 (39%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQF 85 + L P G++ILD GG + + + V+A+D D + + + + + Sbjct: 235 SVNYLQPQNGELILDCCAAPGGKTAHILEHTEDTEVVAIDCDAKRLDRVYDNLERLQLRA 294 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + Q++ + D ++ D S Sbjct: 295 DVICGDARYPQEWWTGEKFDRILLDAPCS 323 >gi|324991319|gb|EGC23252.1| rRNA methylase [Streptococcus sanguinis SK353] Length = 183 Score = 45.9 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 34/92 (36%), Gaps = 6/92 (6%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82 + +A + +++DAT G G+ + K+ V A D AV + + + Sbjct: 7 MAHAFLAEVVTKED-IVVDATMGN-GHDTLFLAKLAKQVYAFDIQEQAVEKTHQRLSEAG 64 Query: 83 -EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + L A L Y +F+LG Sbjct: 65 LDNVQLILAGHEILDQYTDHFK--AAIFNLGY 94 >gi|255505263|ref|ZP_05345115.3| putative rRNA methylase [Bryantella formatexigens DSM 14469] gi|255269025|gb|EET62230.1| putative rRNA methylase [Bryantella formatexigens DSM 14469] Length = 221 Score = 45.9 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 34/85 (40%), Gaps = 5/85 (5%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETMRDYKE--QFSLF 88 G + +DAT G G ++ C V+A D P A+ +E + + L Sbjct: 52 IHEGSLCIDATMGNGNDTQFLCTQAGRNGSVLAFDIQPAALEHTKERLAHALPYCNYQLI 111 Query: 89 QATFSQLQDYVPDKGVDGVVFDLGV 113 + +L Y + D + F+LG Sbjct: 112 LDSHERLDAYAAPESADCIAFNLGY 136 >gi|203282572|pdb|3EEY|A Chain A, Crystal Structure Of Putative Rrna-Methylase From Clostridium Thermocellum gi|203282573|pdb|3EEY|B Chain B, Crystal Structure Of Putative Rrna-Methylase From Clostridium Thermocellum gi|203282574|pdb|3EEY|C Chain C, Crystal Structure Of Putative Rrna-Methylase From Clostridium Thermocellum gi|203282575|pdb|3EEY|D Chain D, Crystal Structure Of Putative Rrna-Methylase From Clostridium Thermocellum gi|203282576|pdb|3EEY|E Chain E, Crystal Structure Of Putative Rrna-Methylase From Clostridium Thermocellum gi|203282577|pdb|3EEY|F Chain F, Crystal Structure Of Putative Rrna-Methylase From Clostridium Thermocellum gi|203282578|pdb|3EEY|G Chain G, Crystal Structure Of Putative Rrna-Methylase From Clostridium Thermocellum gi|203282579|pdb|3EEY|H Chain H, Crystal Structure Of Putative Rrna-Methylase From Clostridium Thermocellum gi|203282580|pdb|3EEY|I Chain I, Crystal Structure Of Putative Rrna-Methylase From Clostridium Thermocellum gi|203282581|pdb|3EEY|J Chain J, Crystal Structure Of Putative Rrna-Methylase From Clostridium Thermocellum Length = 197 Score = 45.9 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 6/85 (7%) Query: 34 PAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK--EQFSLF 88 G ++DAT G G + + V D A++ + + D ++ +L Sbjct: 20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLI 79 Query: 89 QATFSQLQDYVPDKGVDGVVFDLGV 113 + + Y+ D V V+F+LG Sbjct: 80 KDGHQNMDKYI-DCPVKAVMFNLGY 103 >gi|281417413|ref|ZP_06248433.1| putative rRNA methylase [Clostridium thermocellum JW20] gi|281408815|gb|EFB39073.1| putative rRNA methylase [Clostridium thermocellum JW20] Length = 188 Score = 45.9 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 6/85 (7%) Query: 34 PAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK--EQFSLF 88 G ++DAT G G + + V D A++ + + D ++ +L Sbjct: 19 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLI 78 Query: 89 QATFSQLQDYVPDKGVDGVVFDLGV 113 + + Y+ D V V+F+LG Sbjct: 79 KDGHQNMDKYI-DCPVKAVMFNLGY 102 >gi|170288214|ref|YP_001738452.1| hypothetical protein TRQ2_0413 [Thermotoga sp. RQ2] gi|170175717|gb|ACB08769.1| conserved hypothetical protein [Thermotoga sp. RQ2] Length = 254 Score = 45.9 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 52/149 (34%), Gaps = 31/149 (20%) Query: 29 IALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDR----------DPFAVSCG 74 I L P +++LD TFG G S + VI L+ Sbjct: 85 IESLQPEGSELVLDTTFGLG--SEAILMAAFLPEGKVIGLEGSIHIYTVVKYGMENFETD 142 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + ++D ++ L+ A F + PD D V D + ++ S Sbjct: 143 IQWLKDALKRIELYHANFKEYIRSQPDNSFDVVYCD-----PMFENPV----YESSA--- 190 Query: 135 MRMSCSGISA-SDVVNQANVKDLTRILGI 162 M+ A D VN+ +++++ RI Sbjct: 191 --MNPLRPFAVYDTVNEEDIEEMLRIAKK 217 >gi|125973214|ref|YP_001037124.1| putative rRNA methylase [Clostridium thermocellum ATCC 27405] gi|256003689|ref|ZP_05428677.1| putative rRNA methylase [Clostridium thermocellum DSM 2360] gi|125713439|gb|ABN51931.1| putative rRNA methylase [Clostridium thermocellum ATCC 27405] gi|255992250|gb|EEU02344.1| putative rRNA methylase [Clostridium thermocellum DSM 2360] gi|316940556|gb|ADU74590.1| rRNA methylase [Clostridium thermocellum DSM 1313] Length = 188 Score = 45.9 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 6/85 (7%) Query: 34 PAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK--EQFSLF 88 G ++DAT G G + + V D A++ + + D ++ +L Sbjct: 19 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLI 78 Query: 89 QATFSQLQDYVPDKGVDGVVFDLGV 113 + + Y+ D V V+F+LG Sbjct: 79 KDGHQNMDKYI-DCPVKAVMFNLGY 102 >gi|229520215|ref|ZP_04409642.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae TM 11079-80] gi|229342809|gb|EEO07800.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae TM 11079-80] Length = 426 Score = 45.9 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQF 85 + L P G++ILD GG + + V+A+D D + +E ++ + Sbjct: 235 ALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLQLTA 294 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + Q + + D ++ D S Sbjct: 295 QVICGDARYPQQWWQGEQFDRILLDAPCS 323 >gi|229530170|ref|ZP_04419559.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae 12129(1)] gi|229332303|gb|EEN97790.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae 12129(1)] gi|327482955|gb|AEA77362.1| Ribosomal RNA small subunit methyltransferase B [Vibrio cholerae LMA3894-4] Length = 426 Score = 45.9 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQF 85 + L P G++ILD GG + + V+A+D D + +E ++ + Sbjct: 235 ALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLQLTA 294 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + Q + + D ++ D S Sbjct: 295 QVICGDARYPQQWWQGEQFDRILLDAPCS 323 >gi|153821915|ref|ZP_01974582.1| sun protein [Vibrio cholerae B33] gi|254851609|ref|ZP_05240959.1| sun protein [Vibrio cholerae MO10] gi|126520535|gb|EAZ77758.1| sun protein [Vibrio cholerae B33] gi|254847314|gb|EET25728.1| sun protein [Vibrio cholerae MO10] Length = 434 Score = 45.9 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQF 85 + L P G++ILD GG + + V+A+D D + +E ++ + Sbjct: 243 ALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLELTA 302 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + Q + + D ++ D S Sbjct: 303 QVICGDARYPQQWWQGEQFDRILLDAPCS 331 >gi|42783939|ref|NP_981186.1| hypothetical protein BCE_4893 [Bacillus cereus ATCC 10987] gi|42739869|gb|AAS43794.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] Length = 190 Score = 45.9 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 8/89 (8%) Query: 33 NPAPGKVILDATFGAGGYS---RSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSL 87 G +DAT G G + V D A+ +++ + E+ L Sbjct: 17 AVKEGDYAVDATLGNGYDTCFLAEIVGDNGKVFGFDIQKEAIESSTTRLKEKELFERTVL 76 Query: 88 FQATFSQLQDYVPDK---GVDGVVFDLGV 113 + L +P+ V G +F+LG Sbjct: 77 VHDSHDTLLSVLPEDAKGKVTGAIFNLGY 105 >gi|15640076|ref|NP_229703.1| sun protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121587275|ref|ZP_01677048.1| sun protein [Vibrio cholerae 2740-80] gi|121727862|ref|ZP_01680921.1| sun protein [Vibrio cholerae V52] gi|147675284|ref|YP_001218368.1| sun protein [Vibrio cholerae O395] gi|153817606|ref|ZP_01970273.1| sun protein [Vibrio cholerae NCTC 8457] gi|227080281|ref|YP_002808832.1| sun protein [Vibrio cholerae M66-2] gi|298501227|ref|ZP_07011026.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae MAK 757] gi|46397040|sp|Q9KVU5|RSMB_VIBCH RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|9654437|gb|AAF93222.1| sun protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548521|gb|EAX58577.1| sun protein [Vibrio cholerae 2740-80] gi|121629806|gb|EAX62221.1| sun protein [Vibrio cholerae V52] gi|126511874|gb|EAZ74468.1| sun protein [Vibrio cholerae NCTC 8457] gi|146317167|gb|ABQ21706.1| sun protein [Vibrio cholerae O395] gi|227008169|gb|ACP04381.1| sun protein [Vibrio cholerae M66-2] gi|227011953|gb|ACP08163.1| sun protein [Vibrio cholerae O395] gi|297540099|gb|EFH76161.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae MAK 757] Length = 434 Score = 45.9 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQF 85 + L P G++ILD GG + + V+A+D D + +E ++ + Sbjct: 243 ALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLELTA 302 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + Q + + D ++ D S Sbjct: 303 QVICGDARYPQQWWQGEQFDRILLDAPCS 331 >gi|153830135|ref|ZP_01982802.1| sun protein [Vibrio cholerae 623-39] gi|254225568|ref|ZP_04919177.1| sun protein [Vibrio cholerae V51] gi|254291095|ref|ZP_04961892.1| sun protein [Vibrio cholerae AM-19226] gi|125621888|gb|EAZ50213.1| sun protein [Vibrio cholerae V51] gi|148874399|gb|EDL72534.1| sun protein [Vibrio cholerae 623-39] gi|150422940|gb|EDN14890.1| sun protein [Vibrio cholerae AM-19226] Length = 434 Score = 45.9 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQF 85 + L P G++ILD GG + + V+A+D D + +E ++ + Sbjct: 243 ALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLQLTA 302 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + Q + + D ++ D S Sbjct: 303 QVICGDARYPQQWWQGEQFDRILLDAPCS 331 >gi|153802771|ref|ZP_01957357.1| sun protein [Vibrio cholerae MZO-3] gi|124121684|gb|EAY40427.1| sun protein [Vibrio cholerae MZO-3] Length = 434 Score = 45.9 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQF 85 + L P G++ILD GG + + V+A+D D + +E ++ + Sbjct: 243 ALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLQLTA 302 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + Q + + D ++ D S Sbjct: 303 QVICGDARYPQQWWQGEQFDRILLDAPCS 331 >gi|229515917|ref|ZP_04405374.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae TMA 21] gi|229524946|ref|ZP_04414351.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae bv. albensis VL426] gi|229338527|gb|EEO03544.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae bv. albensis VL426] gi|229347017|gb|EEO11979.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae TMA 21] Length = 426 Score = 45.9 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQF 85 + L P G++ILD GG + + V+A+D D + +E ++ + Sbjct: 235 ALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLQLTA 294 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + Q + + D ++ D S Sbjct: 295 QVICGDARYPQQWWQGEQFDRILLDAPCS 323 >gi|229508329|ref|ZP_04397833.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae BX 330286] gi|262155855|ref|ZP_06028977.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae INDRE 91/1] gi|262166898|ref|ZP_06034619.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae RC27] gi|229354602|gb|EEO19524.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae BX 330286] gi|262024669|gb|EEY43349.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae RC27] gi|262030307|gb|EEY48949.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae INDRE 91/1] Length = 426 Score = 45.9 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQF 85 + L P G++ILD GG + + V+A+D D + +E ++ + Sbjct: 235 ALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLELTA 294 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + Q + + D ++ D S Sbjct: 295 QVICGDARYPQQWWQGEQFDRILLDAPCS 323 >gi|262191295|ref|ZP_06049489.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae CT 5369-93] gi|262032833|gb|EEY51377.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae CT 5369-93] Length = 426 Score = 45.9 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQF 85 + L P G++ILD GG + + V+A+D D + +E ++ + Sbjct: 235 ALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLQLTA 294 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + Q + + D ++ D S Sbjct: 295 QVICGDARYPQQWWQGEQFDRILLDAPCS 323 >gi|283788076|ref|YP_003367941.1| ribosomal RNA small subunit methyltransferase B [Citrobacter rodentium ICC168] gi|282951530|emb|CBG91229.1| ribosomal RNA small subunit methyltransferase B [Citrobacter rodentium ICC168] Length = 429 Score = 45.9 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 36/89 (40%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQF 85 +A L P G+ ILD GG + + + V+A+D D +S + ++ Sbjct: 238 CVAFLAPQNGEQILDLCAAPGGKTTHILEAAPDAKVLAVDVDEQRLSRVYDNLKRLGMNA 297 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 ++ Q + ++ D ++ D S Sbjct: 298 TVKQGDGRYPLQWCGEQQFDRILLDAPCS 326 >gi|229508832|ref|ZP_04398323.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae B33] gi|229517103|ref|ZP_04406549.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae RC9] gi|229606604|ref|YP_002877252.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae MJ-1236] gi|255746774|ref|ZP_05420720.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholera CIRS 101] gi|229346166|gb|EEO11138.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae RC9] gi|229354107|gb|EEO19039.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae B33] gi|229369259|gb|ACQ59682.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae MJ-1236] gi|255735531|gb|EET90930.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholera CIRS 101] Length = 426 Score = 45.9 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQF 85 + L P G++ILD GG + + V+A+D D + +E ++ + Sbjct: 235 ALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLELTA 294 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + Q + + D ++ D S Sbjct: 295 QVICGDARYPQQWWQGEQFDRILLDAPCS 323 >gi|229152949|ref|ZP_04281131.1| hypothetical protein bcere0011_44810 [Bacillus cereus m1550] gi|228630562|gb|EEK87209.1| hypothetical protein bcere0011_44810 [Bacillus cereus m1550] Length = 177 Score = 45.9 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 30/90 (33%), Gaps = 10/90 (11%) Query: 33 NPAPGKVILDATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFS 86 G +DAT G G+ V D A+ +++ K E+ Sbjct: 4 AVKEGDYAVDATLGN-GHDTCFLAEIVGNNGKVFGFDIQKEAIESSTTRLKEKKLFERTV 62 Query: 87 LFQATFSQLQDYVP---DKGVDGVVFDLGV 113 L + L +P V G +F+LG Sbjct: 63 LVHDSHDTLLSILPGDAKGKVTGAIFNLGY 92 >gi|30022820|ref|NP_834451.1| SAM-dependent methyltransferase [Bacillus cereus ATCC 14579] gi|29898379|gb|AAP11652.1| SAM-dependent methyltransferase [Bacillus cereus ATCC 14579] Length = 190 Score = 45.9 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 10/90 (11%) Query: 33 NPAPGKVILDATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFS 86 G +DAT G G+ V D A+ +++ + E+ Sbjct: 17 AVKEGDYAVDATLGN-GHDTCFLAEIVGDNGKVFGFDIQKEAIESSTTRLKEKELFERTV 75 Query: 87 LFQATFSQLQDYVPDK---GVDGVVFDLGV 113 L + L +P+ V G +F+LG Sbjct: 76 LVHDSHDTLLSILPEDAKGKVTGAIFNLGY 105 >gi|315230766|ref|YP_004071202.1| ribosomal RNA small subunit methyltransferase B [Thermococcus barophilus MP] gi|315183794|gb|ADT83979.1| ribosomal RNA small subunit methyltransferase B [Thermococcus barophilus MP] Length = 465 Score = 45.9 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 30/83 (36%), Gaps = 4/83 (4%) Query: 32 LNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQFSL 87 L+P PG ++D GG + + + A D D F + +E ++ + Sbjct: 269 LDPKPGMTVVDLAAAPGGKTSHIAELMRNKGKIYAFDIDEFRIKRMKEILKRMGVNIVKI 328 Query: 88 FQATFSQLQDYVPDKGVDGVVFD 110 + + + D V+ D Sbjct: 329 IRKDGRKAPKILGRGIADRVLLD 351 >gi|332358319|gb|EGJ36145.1| rRNA methylase [Streptococcus sanguinis SK355] Length = 183 Score = 45.9 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 6/92 (6%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82 + +A + ++DAT G G+ + K+ V A D AV ++ + + Sbjct: 7 MAHAFLAEVVTKED-TVVDATMGN-GHDTLFLAKLAKQVYAFDIQEQAVEKTRQRLAEAG 64 Query: 83 -EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + L A L Y+ +F+LG Sbjct: 65 LDNAQLILAGHETLDQYLDHFK--AAIFNLGY 94 >gi|328863984|gb|EGG13083.1| hypothetical protein MELLADRAFT_32431 [Melampsora larici-populina 98AG31] Length = 218 Score = 45.9 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 2/73 (2%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96 VI+DA GAGG + F VIA+D DP ++ + Y ++ A F + Sbjct: 41 VIVDAFCGAGGNAIQFASTSDRVIAIDIDPNKIALAEHNATVYGVEDKIEFICADFIEWI 100 Query: 97 DYVPDKGVDGVVF 109 VD + Sbjct: 101 QNQEKGSVDVIFL 113 >gi|206969833|ref|ZP_03230787.1| conserved hypothetical protein [Bacillus cereus AH1134] gi|206735521|gb|EDZ52689.1| conserved hypothetical protein [Bacillus cereus AH1134] Length = 190 Score = 45.9 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 10/90 (11%) Query: 33 NPAPGKVILDATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFS 86 G +DAT G G+ V D A+ +++ + E+ Sbjct: 17 AVKEGDYAVDATLGN-GHDTCFLAEIVGDSGKVFGFDIQKEAIESSTTRLKEKELFERTV 75 Query: 87 LFQATFSQLQDYVPDK---GVDGVVFDLGV 113 L + L +P+ V G +F+LG Sbjct: 76 LVHDSHDTLLSVLPEDAKGKVTGAIFNLGY 105 >gi|226953279|ref|ZP_03823743.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter sp. ATCC 27244] gi|226835967|gb|EEH68350.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter sp. ATCC 27244] Length = 435 Score = 45.9 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 2/86 (2%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88 LL GKV++DA GG + + + +IA+D+DP + E + Sbjct: 242 LLPDLDGKVVVDACAAPGGKTAHILERFNPKKLIAIDQDPKRIVRIGENLERLALNLDNV 301 Query: 89 QATFSQLQDYVPDKGVDGVVFDLGVS 114 + + + + VD +V D S Sbjct: 302 EILVADATTWQAQEPVDCIVLDAPCS 327 >gi|194036729|ref|XP_001927911.1| PREDICTED: trimethylguanosine synthase [Sus scrofa] Length = 851 Score = 45.9 bits (108), Expect = 0.010, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 2/68 (2%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96 +++DA G GG + F G VIA+D DP + + Y ++ Q F QL Sbjct: 691 IVVDAFCGVGGNTIQFALTGKRVIAIDIDPVKIDLARNNAEVYGVADKIEFIQGDFLQLA 750 Query: 97 DYVPDKGV 104 + V Sbjct: 751 PRLKADVV 758 >gi|30264819|ref|NP_847196.1| hypothetical protein BA_5002 [Bacillus anthracis str. Ames] gi|47530304|ref|YP_021653.1| hypothetical protein GBAA_5002 [Bacillus anthracis str. 'Ames Ancestor'] gi|49187638|ref|YP_030891.1| hypothetical protein BAS4647 [Bacillus anthracis str. Sterne] gi|65322120|ref|ZP_00395079.1| COG0500: SAM-dependent methyltransferases [Bacillus anthracis str. A2012] gi|165869764|ref|ZP_02214422.1| conserved hypothetical protein [Bacillus anthracis str. A0488] gi|167633949|ref|ZP_02392272.1| conserved hypothetical protein [Bacillus anthracis str. A0442] gi|167638131|ref|ZP_02396409.1| conserved hypothetical protein [Bacillus anthracis str. A0193] gi|170685777|ref|ZP_02877000.1| conserved hypothetical protein [Bacillus anthracis str. A0465] gi|170705366|ref|ZP_02895830.1| conserved hypothetical protein [Bacillus anthracis str. A0389] gi|177651183|ref|ZP_02934014.1| conserved hypothetical protein [Bacillus anthracis str. A0174] gi|190568308|ref|ZP_03021216.1| conserved hypothetical protein [Bacillus anthracis Tsiankovskii-I] gi|227817544|ref|YP_002817553.1| hypothetical protein BAMEG_5036 [Bacillus anthracis str. CDC 684] gi|229604073|ref|YP_002869027.1| hypothetical protein BAA_5015 [Bacillus anthracis str. A0248] gi|254687560|ref|ZP_05151416.1| hypothetical protein BantC_27450 [Bacillus anthracis str. CNEVA-9066] gi|254725125|ref|ZP_05186908.1| hypothetical protein BantA1_22099 [Bacillus anthracis str. A1055] gi|254736863|ref|ZP_05194569.1| hypothetical protein BantWNA_16981 [Bacillus anthracis str. Western North America USA6153] gi|254741898|ref|ZP_05199585.1| hypothetical protein BantKB_12908 [Bacillus anthracis str. Kruger B] gi|254754504|ref|ZP_05206539.1| hypothetical protein BantV_18637 [Bacillus anthracis str. Vollum] gi|254757337|ref|ZP_05209364.1| hypothetical protein BantA9_03431 [Bacillus anthracis str. Australia 94] gi|30259494|gb|AAP28682.1| conserved hypothetical protein [Bacillus anthracis str. Ames] gi|47505452|gb|AAT34128.1| conserved hypothetical protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49181565|gb|AAT56941.1| conserved hypothetical protein [Bacillus anthracis str. Sterne] gi|164714593|gb|EDR20112.1| conserved hypothetical protein [Bacillus anthracis str. A0488] gi|167513948|gb|EDR89316.1| conserved hypothetical protein [Bacillus anthracis str. A0193] gi|167530750|gb|EDR93452.1| conserved hypothetical protein [Bacillus anthracis str. A0442] gi|170129491|gb|EDS98354.1| conserved hypothetical protein [Bacillus anthracis str. A0389] gi|170670241|gb|EDT20981.1| conserved hypothetical protein [Bacillus anthracis str. A0465] gi|172083009|gb|EDT68071.1| conserved hypothetical protein [Bacillus anthracis str. A0174] gi|190560564|gb|EDV14541.1| conserved hypothetical protein [Bacillus anthracis Tsiankovskii-I] gi|227006163|gb|ACP15906.1| conserved hypothetical protein [Bacillus anthracis str. CDC 684] gi|229268481|gb|ACQ50118.1| conserved hypothetical protein [Bacillus anthracis str. A0248] Length = 190 Score = 45.9 bits (108), Expect = 0.010, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 10/90 (11%) Query: 33 NPAPGKVILDATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFS 86 G +DAT G G+ V D A+ +++ + E+ Sbjct: 17 AVKEGDYAVDATLGN-GHDTCFLAEIVGDSGKVFGFDIQKEAIESSTTRLKEKELFERTV 75 Query: 87 LFQATFSQLQDYVPDK---GVDGVVFDLGV 113 L + L +P+ V G +F+LG Sbjct: 76 LVHDSHDTLLSVLPEDAKGKVTGAIFNLGY 105 >gi|156548692|ref|XP_001602591.1| PREDICTED: similar to prip interacting protein. pimt [Nasonia vitripennis] Length = 577 Score = 45.6 bits (107), Expect = 0.010, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 36/105 (34%), Gaps = 16/105 (15%) Query: 41 LDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQDY 98 +DA GAGG S SF V A+D DP + + R Y ++ F L + Sbjct: 424 IDAFCGAGGNSISFAFTCERVYAIDIDPKKIEMARHNARIYGVEDRIEFIIGDFFCLAER 483 Query: 99 VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR--MSCSG 141 + D+ S S+ + D+ M G Sbjct: 484 L--------FGDVVFLSPPWGGP----SYIQDKSFDIENIMDPHG 516 >gi|332193981|gb|AEE32102.1| S-adenosylmethionine-dependent methyltransferase domain-containing protein [Arabidopsis thaliana] Length = 538 Score = 45.6 bits (107), Expect = 0.010, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 2/69 (2%) Query: 38 KVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQL 95 +++D G GG + F VIA+D DP + + Y ++ + F L Sbjct: 370 GIVIDCFTGVGGNAIQFASRSHYVIAIDLDPKKLDLAKHNAAIYGVADKIDFVKGDFFDL 429 Query: 96 QDYVPDKGV 104 + V Sbjct: 430 AHNLKAGTV 438 >gi|260581738|ref|ZP_05849535.1| SAM-dependent methyltransferase [Haemophilus influenzae NT127] gi|260095331|gb|EEW79222.1| SAM-dependent methyltransferase [Haemophilus influenzae NT127] Length = 254 Score = 45.6 bits (107), Expect = 0.010, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 66/174 (37%), Gaps = 29/174 (16%) Query: 22 PVLLEKVIA---LLNPAP---GKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCG 74 P+ L ++I +L+ P GK +LD G GG+ + + + G + VI D + Sbjct: 24 PISLNEIIEKPTMLSLLPNLKGKKLLDLGCGTGGHLQLYLERGAAKVIGTDLSEKMLEQA 83 Query: 75 QETMR---DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++ ++ + +FSL+ +L + +P+ D + SS F+F Sbjct: 84 EKDLQKCGQFSGRFSLYHLPMEKLAE-LPESHFDVI-----TSS---------FAFHYIE 128 Query: 132 PLDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 +S +S++ + + +T E+ V R + Sbjct: 129 NFPTLLSTIHDKLSSNGTLIFSQEHPITTCHKE--GERWEKNDKKQQVAYRLNH 180 >gi|257418397|ref|ZP_05595391.1| SAM-dependent methyltransferase [Enterococcus faecalis T11] gi|257160225|gb|EEU90185.1| SAM-dependent methyltransferase [Enterococcus faecalis T11] gi|315148160|gb|EFT92176.1| rRNA methylase family protein [Enterococcus faecalis TX4244] gi|315166998|gb|EFU11015.1| rRNA methylase family protein [Enterococcus faecalis TX1341] Length = 187 Score = 45.6 bits (107), Expect = 0.010, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 13/97 (13%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMR 79 LL++V+ PG ++DAT G G+ +F V A D A+ ++ + Sbjct: 12 LLKEVVE-----PGDFVIDATMGN-GHDTAFLAELVGPSGEVFAFDIQKEALINTEQKLT 65 Query: 80 DYK--EQFSLFQATFSQLQDYV-PDKGVDGVVFDLGV 113 + Q +LF L + + + +F+LG Sbjct: 66 ELNLLSQTTLFPLGHEHLHAVLDEETEITAAIFNLGY 102 >gi|42571775|ref|NP_973978.1| WW domain-containing protein [Arabidopsis thaliana] Length = 538 Score = 45.6 bits (107), Expect = 0.010, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 2/69 (2%) Query: 38 KVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQL 95 +++D G GG + F VIA+D DP + + Y ++ + F L Sbjct: 368 GIVIDCFTGVGGNAIQFASRSHYVIAIDLDPKKLDLAKHNAAIYGVADKIDFVKGDFFDL 427 Query: 96 QDYVPDKGV 104 + V Sbjct: 428 AHNLKAGTV 436 >gi|329664270|ref|NP_001192627.1| trimethylguanosine synthase [Bos taurus] gi|297482318|ref|XP_002692697.1| PREDICTED: hypothetical protein [Bos taurus] gi|296480654|gb|DAA22769.1| hypothetical protein BOS_13850 [Bos taurus] Length = 852 Score = 45.6 bits (107), Expect = 0.010, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 2/69 (2%) Query: 38 KVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQL 95 I+DA G GG + F G VIA+D DP + + Y ++ F QL Sbjct: 691 GTIVDAFCGVGGNTIQFALTGKRVIAIDIDPVKIDLARNNAEIYGVVDKIEFICGDFLQL 750 Query: 96 QDYVPDKGV 104 + V Sbjct: 751 ASSLKADVV 759 >gi|297851504|ref|XP_002893633.1| hypothetical protein ARALYDRAFT_336158 [Arabidopsis lyrata subsp. lyrata] gi|297339475|gb|EFH69892.1| hypothetical protein ARALYDRAFT_336158 [Arabidopsis lyrata subsp. lyrata] Length = 233 Score = 45.6 bits (107), Expect = 0.010, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 42/122 (34%), Gaps = 12/122 (9%) Query: 37 GKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQ 94 GKV++D G GG + F K+ S+V+A+D DP V Y + F Q Sbjct: 74 GKVVIDCFSGVGGNTIQFAKVCSSVVAIDIDPVKVELAMNNAMVYGVANRVDFVIGDFIQ 133 Query: 95 LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVK 154 L + D V + S++ LDM G S + Sbjct: 134 LAPSLKG---DVVFLSPPWGGPMYRDVE---SYK----LDMLQPRDGYSLFQIAQSITPN 183 Query: 155 DL 156 + Sbjct: 184 II 185 >gi|291546556|emb|CBL19664.1| Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Ruminococcus sp. SR1/5] Length = 188 Score = 45.6 bits (107), Expect = 0.010, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 5/83 (6%) Query: 36 PGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMR--DYKEQFSLFQA 90 PG + +DAT G G + ++ V+A D A+ +E ++ + E + L Sbjct: 20 PGDICIDATMGNGNDTALLSQLAGKRGRVLAFDIQKQALEHTKERLKRDNCPENYQLLLE 79 Query: 91 TFSQLQDYVPDKGVDGVVFDLGV 113 + + Y ++ V + F+LG Sbjct: 80 SHENMDVYAEEETVSCITFNLGY 102 >gi|71409126|ref|XP_806926.1| proliferator-activated receptor-interacting protein (PRIP) interacting protein (PIMT) [Trypanosoma gi|70870807|gb|EAN85075.1| proliferator-activated receptor-interacting protein (PRIP) interacting protein (PIMT), putative [Trypanosoma cruzi] Length = 200 Score = 45.6 bits (107), Expect = 0.010, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 4/70 (5%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQ 96 +LD G GG + ++ V+A+D DP A+ ++ + Y ++ S + F L+ Sbjct: 63 CVLDLFCGCGGDTVQLARVYEKVVAVDIDPDAIEAAKKNVEVYGVGDRVSFYCCDFRTLK 122 Query: 97 DYVPDKGVDG 106 + + D Sbjct: 123 --LDNMEFDA 130 >gi|71409977|ref|XP_807306.1| proliferator-activated receptor-interacting protein (PRIP) interacting protein (PIMT) [Trypanosoma gi|70871278|gb|EAN85455.1| proliferator-activated receptor-interacting protein (PRIP) interacting protein (PIMT), putative [Trypanosoma cruzi] Length = 250 Score = 45.6 bits (107), Expect = 0.010, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 4/70 (5%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQ 96 +LD G GG + ++ V+A+D DP A+ ++ + Y ++ S + F L+ Sbjct: 63 CVLDLFCGCGGDTVQLARVYEKVVAVDIDPDAIEAAKKNVEVYGVGDRVSFYCCDFRTLK 122 Query: 97 DYVPDKGVDG 106 + + D Sbjct: 123 --LDNMEFDA 130 >gi|126465287|ref|YP_001040396.1| Fmu (Sun) domain-containing protein [Staphylothermus marinus F1] gi|126014110|gb|ABN69488.1| Fmu (Sun) domain protein [Staphylothermus marinus F1] Length = 449 Score = 45.6 bits (107), Expect = 0.011, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 36/88 (40%), Gaps = 4/88 (4%) Query: 32 LNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ-FSL 87 L+P PG ++D GG + + A D D ++ ++ +R + + Sbjct: 253 LDPKPGMTVVDMAAAPGGKTQHMAELMNNEGVIYAFDIDEKRIARMRDILRRTGVRNARI 312 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGVSS 115 ++ + D + ++ D V+ D SS Sbjct: 313 YREDSRKAPDILGEEIADRVLLDAPCSS 340 >gi|55821621|ref|YP_140063.1| rRNA methylase [Streptococcus thermophilus LMG 18311] gi|116628334|ref|YP_820953.1| rRNA methylase (SAM-dependent methyltransferase superfamily), putative [Streptococcus thermophilus LMD-9] gi|55737606|gb|AAV61248.1| rRNA methylase (SAM-dependent methyltransferase superfamily), putative [Streptococcus thermophilus LMG 18311] gi|116101611|gb|ABJ66757.1| SAM-dependent methyltransferase [Streptococcus thermophilus LMD-9] gi|312278960|gb|ADQ63617.1| RRNA methylase (SAM-dependent methyltransferase superfamily), putative [Streptococcus thermophilus ND03] Length = 182 Score = 45.6 bits (107), Expect = 0.011, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 7/90 (7%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-E 83 L +V+ +++DAT G G + + V A D A+ + + D E Sbjct: 13 LAEVLD-----DESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLGIE 67 Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 L L YV + + +F+LG Sbjct: 68 NTELILDGHENLDHYVREP-IRAAIFNLGY 96 >gi|325968037|ref|YP_004244229.1| Fmu (Sun) domain protein [Vulcanisaeta moutnovskia 768-28] gi|323707240|gb|ADY00727.1| Fmu (Sun) domain protein [Vulcanisaeta moutnovskia 768-28] Length = 404 Score = 45.6 bits (107), Expect = 0.011, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 7/90 (7%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETMRDYKE- 83 V +L+P PG VI+D GG + ++G V A DR + E + Sbjct: 198 VTHILDPRPGDVIVDMNAAPGGKTSHIVQLGGGKAVVYAFDRSENKIREIIENLSRLGMD 257 Query: 84 ---QFSLFQATFSQLQDYVPDKGVDGVVFD 110 + + F + + VD ++ D Sbjct: 258 SLYRVEVRDTRFLDIDEPDLINSVDKILID 287 >gi|268316762|ref|YP_003290481.1| putative rRNA methylase [Rhodothermus marinus DSM 4252] gi|262334296|gb|ACY48093.1| putative rRNA methylase [Rhodothermus marinus DSM 4252] Length = 187 Score = 45.6 bits (107), Expect = 0.011, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 41/99 (41%), Gaps = 11/99 (11%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMR 79 L +++A PG++ +DAT G G+ F +V D A++ + + Sbjct: 2 LAHRIVAS-VLQPGEMAVDATVGN-GHDTLFLARQVGPQGHVYGFDVQEEALARTRRRLE 59 Query: 80 DYK--EQFSLFQATFSQLQDYVP---DKGVDGVVFDLGV 113 + E+ +L + + VP + V+F+LG Sbjct: 60 EAGLHERVTLLRMGHEHMAKAVPVAWHGRIGAVMFNLGY 98 >gi|332367422|gb|EGJ45155.1| rRNA methylase [Streptococcus sanguinis SK1059] Length = 183 Score = 45.6 bits (107), Expect = 0.011, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 6/92 (6%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82 + +A + ++DAT G G+ + ++ V A D AV + + + Sbjct: 7 MAHAFLAEVVTKED-TVVDATMGN-GHDTLFLAQLAKQVYAFDIQEQAVEKTCQRLAEAG 64 Query: 83 -EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + L A L Y +F+LG Sbjct: 65 LDNVQLILAGHETLDQYTDHFK--AAIFNLGY 94 >gi|307824127|ref|ZP_07654354.1| putative rRNA methylase [Methylobacter tundripaludum SV96] gi|307734911|gb|EFO05761.1| putative rRNA methylase [Methylobacter tundripaludum SV96] Length = 191 Score = 45.6 bits (107), Expect = 0.011, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 10/88 (11%) Query: 35 APGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQE--TMRDYKEQFSLF 88 PG + +DAT G G+ F +V D A+ E E +L Sbjct: 19 RPGDIAIDATVGN-GHDTVFLAEQVGPSGHVYGFDIQQAAIDSTLEKFRQAPSPEYLTLI 77 Query: 89 QATFSQLQDYVPDK---GVDGVVFDLGV 113 A+ + + + +P V ++F+LG Sbjct: 78 HASHADMDEKIPAYHHGKVRVIMFNLGY 105 >gi|297583531|ref|YP_003699311.1| putative rRNA methylase [Bacillus selenitireducens MLS10] gi|297141988|gb|ADH98745.1| putative rRNA methylase [Bacillus selenitireducens MLS10] Length = 188 Score = 45.6 bits (107), Expect = 0.011, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 8/86 (9%) Query: 35 APGKVILDATFGAGGY-SRSFCK---MGSNVIALDRDPFAVSCGQETMRDYK--EQFSLF 88 G ++DAT G G+ + + +V D A+ ++ E+ +L Sbjct: 19 QEGDTVVDATVGN-GHDTVYLAELVGASGSVYGFDIQKTALDATLNKLQQKGLEERVALI 77 Query: 89 QATFSQLQDYVP-DKGVDGVVFDLGV 113 QL Y+P +K V VF+LG Sbjct: 78 HDGHEQLGAYIPQEKTVHAAVFNLGY 103 >gi|218905984|ref|YP_002453818.1| hypothetical protein BCAH820_4872 [Bacillus cereus AH820] gi|218536553|gb|ACK88951.1| conserved hypothetical protein [Bacillus cereus AH820] Length = 190 Score = 45.6 bits (107), Expect = 0.011, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 10/90 (11%) Query: 33 NPAPGKVILDATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFS 86 G +DAT G G+ V D A+ +++ + E+ Sbjct: 17 AVKEGDYAVDATLGN-GHDTCFLAEIVGDSGKVFGFDIQKEAIESSTTRLKEKELFERTV 75 Query: 87 LFQATFSQLQDYVPD---KGVDGVVFDLGV 113 L + L +P+ V G +F+LG Sbjct: 76 LVHDSHDTLLSVLPEGAKGKVTGAIFNLGY 105 >gi|6634778|gb|AAF19758.1|AC009917_17 Contains similarity to gi|629253 lmbW protein from Streptomyces lincolnensis [Arabidopsis thaliana] gi|332193121|gb|AEE31242.1| S-adenosyl-L-methionine-dependent methyltransferase domain-containing protein [Arabidopsis thaliana] Length = 455 Score = 45.6 bits (107), Expect = 0.012, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 41/122 (33%), Gaps = 12/122 (9%) Query: 37 GKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQ 94 GKV++D G GG + F K+ S+V+A+D DP V Y + F Q Sbjct: 296 GKVVIDCFSGVGGNTIQFAKVCSSVVAIDIDPVKVELAMNNAMVYGVANRVDFVIGDFIQ 355 Query: 95 LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVK 154 L + D V + S+ LDM G S + Sbjct: 356 LAPSLKG---DVVFLSPPWGGPMYRDFE---SYN----LDMLQPRDGYSLFQIAQSITPN 405 Query: 155 DL 156 + Sbjct: 406 II 407 >gi|30691953|ref|NP_174343.2| unknown protein [Arabidopsis thaliana] Length = 391 Score = 45.6 bits (107), Expect = 0.012, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 41/122 (33%), Gaps = 12/122 (9%) Query: 37 GKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQ 94 GKV++D G GG + F K+ S+V+A+D DP V Y + F Q Sbjct: 232 GKVVIDCFSGVGGNTIQFAKVCSSVVAIDIDPVKVELAMNNAMVYGVANRVDFVIGDFIQ 291 Query: 95 LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVK 154 L + D V + S+ LDM G S + Sbjct: 292 LAPSLKG---DVVFLSPPWGGPMYRDFE---SYN----LDMLQPRDGYSLFQIAQSITPN 341 Query: 155 DL 156 + Sbjct: 342 II 343 >gi|225871129|ref|YP_002747076.1| rRNA methylase [Streptococcus equi subsp. equi 4047] gi|225700533|emb|CAW95003.1| putative rRNA methylase [Streptococcus equi subsp. equi 4047] Length = 185 Score = 45.6 bits (107), Expect = 0.012, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 7/90 (7%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-E 83 L++V+ + A +DAT G G + + V A D A++ QE + Sbjct: 13 LKEVLDKQSIA-----VDATMGNGYDTAFLASLSQRVYAFDVQQQALTKTQERLEQQGLT 67 Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 L A Q+ YV + + +F+LG Sbjct: 68 NAELILAGHEQVDQYVKEP-IRAAIFNLGY 96 >gi|229019986|ref|ZP_04176776.1| hypothetical protein bcere0030_44840 [Bacillus cereus AH1273] gi|229026221|ref|ZP_04182581.1| hypothetical protein bcere0029_44990 [Bacillus cereus AH1272] gi|228735067|gb|EEL85702.1| hypothetical protein bcere0029_44990 [Bacillus cereus AH1272] gi|228741307|gb|EEL91517.1| hypothetical protein bcere0030_44840 [Bacillus cereus AH1273] Length = 177 Score = 45.6 bits (107), Expect = 0.012, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 10/90 (11%) Query: 33 NPAPGKVILDATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFS 86 G +DAT G G+ V D A+ +++ + E+ Sbjct: 4 AVKEGDYAIDATLGN-GHDTCFLAEIVGDNGKVFGFDIQKEAIESSTIRLKEKELFERTV 62 Query: 87 LFQATFSQLQDYVPDK---GVDGVVFDLGV 113 L + L +P+ V G +F+LG Sbjct: 63 LVHDSHDTLLSVLPEDAKGKVTGAIFNLGY 92 >gi|242764673|ref|XP_002340822.1| RNA methylase family protein, putative [Talaromyces stipitatus ATCC 10500] gi|218724018|gb|EED23435.1| RNA methylase family protein, putative [Talaromyces stipitatus ATCC 10500] Length = 242 Score = 45.6 bits (107), Expect = 0.012, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 55/133 (41%), Gaps = 14/133 (10%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMRDYK--EQFSLFQ 89 P V++DA GAGG S +F K G V A+++DP ++C + + Y + + F+ Sbjct: 72 PKDKVVLIDAFAGAGGNSIAFAKSGRWKRVYAIEKDPAVLACAKHNAKIYGVQSKITWFE 131 Query: 90 A-TFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVV 148 F L+ ++ D G VVF S ++ +++ + S + Sbjct: 132 GDCFEILKTHLKDLGFYSVVFA----SPPWGGPG----YRSDEVFNLQ-TMEPYSLGHLY 182 Query: 149 NQANVKDLTRILG 161 + + +L Sbjct: 183 REYSAFSKHIVLY 195 >gi|284006133|emb|CBA71374.1| 16S rRNA methyltransferase B [Arsenophonus nasoniae] Length = 426 Score = 45.6 bits (107), Expect = 0.012, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 38/91 (41%), Gaps = 2/91 (2%) Query: 26 EKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKE 83 ++ + LL P G+ ILD GG + ++ +V+A+D D + QE + K Sbjct: 236 QRCVELLAPKNGEYILDLCAAPGGKTTYILELAPKADVLAVDIDQLRIKRIQENLNRVKL 295 Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + + +++ D ++ D S Sbjct: 296 HARVIVGDGRKPLEWISGAKFDRILLDAPCS 326 >gi|269103777|ref|ZP_06156474.1| ribosomal RNA small subunit methyltransferase B [Photobacterium damselae subsp. damselae CIP 102761] gi|268163675|gb|EEZ42171.1| ribosomal RNA small subunit methyltransferase B [Photobacterium damselae subsp. damselae CIP 102761] Length = 308 Score = 45.6 bits (107), Expect = 0.012, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQF 85 I L P G++ILD GG + + + V+A+D D ++ + ++ Q Sbjct: 118 AIEYLQPQAGELILDCCAAPGGKTAHILEHVPSAQVVAIDCDEHRLARVHDNLQRLNLQA 177 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + A + + D ++ D S Sbjct: 178 KVLCADARYPEKWWDGDKFDRILLDAPCS 206 >gi|325109448|ref|YP_004270516.1| rRNA methylase [Planctomyces brasiliensis DSM 5305] gi|324969716|gb|ADY60494.1| rRNA methylase [Planctomyces brasiliensis DSM 5305] Length = 185 Score = 45.6 bits (107), Expect = 0.012, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 44/104 (42%), Gaps = 12/104 (11%) Query: 20 HVP-V-LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSC 73 H+ V + + PG ++DAT G G+ V A D P A+ Sbjct: 3 HISLVDMAHAAVQQ-AVQPGDCVIDATAGN-GHDTLILAEAVFPEGQVHAFDIQPSAIEQ 60 Query: 74 GQETM-RDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGV 113 + + + SL+QA+ +++ ++P + V ++F+LG Sbjct: 61 TRLRLPANLSSIVSLYQASHAEMPLHLPPESRGQVAAILFNLGY 104 >gi|297526431|ref|YP_003668455.1| Fmu (Sun) domain protein [Staphylothermus hellenicus DSM 12710] gi|297255347|gb|ADI31556.1| Fmu (Sun) domain protein [Staphylothermus hellenicus DSM 12710] Length = 449 Score = 45.6 bits (107), Expect = 0.012, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 38/88 (43%), Gaps = 4/88 (4%) Query: 32 LNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETMRDYKEQF-SL 87 L+P PG ++D GG ++ ++ N + A D D + Q +R + + Sbjct: 253 LDPKPGMTVVDMAAAPGGKTQHIAELMGNEGVIYAFDVDKKRIDRMQGILRRTGVRIAKI 312 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGVSS 115 ++ + + + +K D V+ D SS Sbjct: 313 YREDSRKAPEILGEKIADRVLLDAPCSS 340 >gi|221135270|ref|ZP_03561573.1| 16S rRNA m(5)C 967 methyltransferase [Glaciecola sp. HTCC2999] Length = 442 Score = 45.6 bits (107), Expect = 0.012, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 35/88 (39%), Gaps = 3/88 (3%) Query: 30 ALLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCGQETMRDYKEQFS 86 LL+ PG +LD GG + + +A+D DP + +E + + + Sbjct: 241 QLLDVQPGHRVLDCCAAPGGKTAHILASQPELEECVAIDNDPSRLVRVEENLARLGHEAT 300 Query: 87 LFQATFSQLQDYVPDKGVDGVVFDLGVS 114 L A ++ + + D ++ D S Sbjct: 301 LICAAAEDVEGWYGGEPFDRILLDAPCS 328 >gi|225867956|ref|YP_002743904.1| rRNA methylase [Streptococcus equi subsp. zooepidemicus] gi|225701232|emb|CAW98182.1| putative rRNA methylase [Streptococcus equi subsp. zooepidemicus] Length = 185 Score = 45.6 bits (107), Expect = 0.012, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 7/90 (7%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-E 83 L++V+ + A +DAT G G + + V A D A++ QE + Sbjct: 13 LKEVLDKQSIA-----VDATMGNGYDTAFLASLSQRVYAFDVQQQALTKTQERLEQQGLT 67 Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 L A Q+ YV + + +F+LG Sbjct: 68 NAELILAGHEQVDQYVKEP-IRAAIFNLGY 96 >gi|196041491|ref|ZP_03108784.1| conserved hypothetical protein [Bacillus cereus NVH0597-99] gi|196027739|gb|EDX66353.1| conserved hypothetical protein [Bacillus cereus NVH0597-99] Length = 190 Score = 45.6 bits (107), Expect = 0.013, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 8/89 (8%) Query: 33 NPAPGKVILDATFGAGGYS---RSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSL 87 G +DAT G G + V D A+ +++ + E+ L Sbjct: 17 AVKEGDYAVDATLGNGYDTCFLAEIVGDNGKVFGFDIQKEAIESSTIRLKEKELFERTVL 76 Query: 88 FQATFSQLQDYVPDK---GVDGVVFDLGV 113 + L +P+ V G +F+LG Sbjct: 77 VHDSHDTLLSVLPEDAKGKVTGAIFNLGY 105 >gi|311278256|ref|YP_003940487.1| RNA methyltransferase, TrmA family [Enterobacter cloacae SCF1] gi|308747451|gb|ADO47203.1| RNA methyltransferase, TrmA family [Enterobacter cloacae SCF1] Length = 433 Score = 45.6 bits (107), Expect = 0.013, Method: Composition-based stats. Identities = 20/131 (15%), Positives = 43/131 (32%), Gaps = 9/131 (6%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82 ++ I L+ P +LD G G ++ + ++V+ ++ P V Q+ Sbjct: 275 MVATAIDWLDIQPDDRVLDLFCGMGNFTLPLARRAASVVGVEGVPALVEKAQQNAARNGL 334 Query: 83 EQFSLFQATFSQ--LQDYVPDKGVDGVVFDL------GVSSMQIDCGDRGFSFQKSGPLD 134 + F + + G D ++ D GV + R + P Sbjct: 335 HNVTFFHENLEEDVTRQAWAKNGFDKILLDPARAGASGVMQHVVKLAPRRVVYVSCNPAT 394 Query: 135 MRMSCSGISAS 145 + + A+ Sbjct: 395 LARDSEALLAA 405 >gi|297852270|ref|XP_002894016.1| WW domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297339858|gb|EFH70275.1| WW domain-containing protein [Arabidopsis lyrata subsp. lyrata] Length = 550 Score = 45.2 bits (106), Expect = 0.013, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 2/69 (2%) Query: 38 KVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQL 95 +++D G GG + F VIA+D DP + Q Y ++ + F L Sbjct: 389 GIVIDCFTGVGGNAIQFASRRHYVIAIDLDPKKIDLAQHNAAIYGVADKIDFVKGDFFDL 448 Query: 96 QDYVPDKGV 104 + V Sbjct: 449 AHDLKAGTV 457 >gi|239905436|ref|YP_002952175.1| hypothetical protein DMR_07980 [Desulfovibrio magneticus RS-1] gi|239795300|dbj|BAH74289.1| hypothetical protein [Desulfovibrio magneticus RS-1] Length = 209 Score = 45.2 bits (106), Expect = 0.013, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 10/90 (11%) Query: 33 NPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK--EQFS 86 PG + +DAT G G+ + V D A++ + + E+ Sbjct: 19 AVRPGDLAVDATVGN-GHDTALLARLVGPSGLVHGFDVQAEAIASAERLLAAAGLAERVR 77 Query: 87 LFQATFSQLQDYVPDKG---VDGVVFDLGV 113 L +L + +P+ VVF+LG Sbjct: 78 LHVLGHERLAEVLPEADHGRATAVVFNLGY 107 >gi|222099120|ref|YP_002533688.1| hypothetical protein CTN_0146 [Thermotoga neapolitana DSM 4359] gi|221571510|gb|ACM22322.1| Putative uncharacterized protein [Thermotoga neapolitana DSM 4359] Length = 238 Score = 45.2 bits (106), Expect = 0.013, Method: Composition-based stats. Identities = 32/149 (21%), Positives = 52/149 (34%), Gaps = 31/149 (20%) Query: 29 IALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDR----------DPFAVSCG 74 I L P +V+LD TFG G S + VI L+ Sbjct: 69 IETLQPEGNEVVLDTTFGLG--SEAILMAAFLPEGKVIGLEGSIHIYTVVKHGMENFETD 126 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + +++ ++ L+ A F + PD D V D + ++ S Sbjct: 127 IKWLKEALKRIELYHADFKEYIRKQPDNSFDVVYCD-----PMFENPV----YESSA--- 174 Query: 135 MRMSCSGISA-SDVVNQANVKDLTRILGI 162 M+ A D VN+ +VK++ RI Sbjct: 175 --MNPLRPFAVYDTVNEDDVKEMLRIARK 201 >gi|304440266|ref|ZP_07400156.1| rRNA methyltransferase [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371315|gb|EFM24931.1| rRNA methyltransferase [Peptoniphilus duerdenii ATCC BAA-1640] Length = 181 Score = 45.2 bits (106), Expect = 0.013, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 3/87 (3%) Query: 29 IALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQETMRDY-KEQFS 86 + LL +DAT G G + S K ++V + D A+ E ++ + +++++ Sbjct: 11 LNLLKENNFSYGVDATLGNGNDTYSILKYTDAHVTSFDIQEMALESSLEKLKTFSRDRYN 70 Query: 87 LFQATFSQLQDYVPDKGVDGVVFDLGV 113 L + S + Y+ D D +VF+ G Sbjct: 71 LILDSHSNMDRYLKD-SPDLIVFNTGY 96 >gi|304384539|ref|ZP_07366885.1| rRNA methylase [Pediococcus acidilactici DSM 20284] gi|304328733|gb|EFL95953.1| rRNA methylase [Pediococcus acidilactici DSM 20284] Length = 187 Score = 45.2 bits (106), Expect = 0.013, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 14/97 (14%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFC----KMGSNVIALDRDPFAVSCGQETMR 79 LL +V+ PG ++DAT G G+ F + V + D A+S + + Sbjct: 12 LLAEVV-----QPGDHVVDATMGN-GHDTLFLANLVQSQGQVFSFDIQAAALSATEARLE 65 Query: 80 DYKE---QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 L Q + QL YV D + G VF+LG Sbjct: 66 KQLPDHQHVQLIQDSHDQLTQYV-DTPISGAVFNLGY 101 >gi|289550483|ref|YP_003471387.1| SAM-dependent methyltransferase, MraW methylase family [Staphylococcus lugdunensis HKU09-01] gi|315657973|ref|ZP_07910847.1| rRNA methyltransferase [Staphylococcus lugdunensis M23590] gi|289180015|gb|ADC87260.1| SAM-dependent methyltransferase, MraW methylase family [Staphylococcus lugdunensis HKU09-01] gi|315497009|gb|EFU85330.1| rRNA methyltransferase [Staphylococcus lugdunensis M23590] Length = 187 Score = 45.2 bits (106), Expect = 0.014, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 33/85 (38%), Gaps = 6/85 (7%) Query: 34 PAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91 +++DAT G G + + +V D A+ + ++ +K SL + Sbjct: 18 IQSDSIVIDATCGNGFDTLFLAQHVPKGHVYGFDIQQQAIDNTAKKIKSFK-NVSLIHDS 76 Query: 92 FSQLQDYV---PDKGVDGVVFDLGV 113 + D++ + +F+LG Sbjct: 77 HEYISDHLISAHKNKITAAIFNLGY 101 >gi|164688312|ref|ZP_02212340.1| hypothetical protein CLOBAR_01957 [Clostridium bartlettii DSM 16795] gi|164602725|gb|EDQ96190.1| hypothetical protein CLOBAR_01957 [Clostridium bartlettii DSM 16795] Length = 190 Score = 45.2 bits (106), Expect = 0.014, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 5/84 (5%) Query: 34 PAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETM-RDYKEQFSLFQ 89 G V++DAT G G + K V A D A+ + + ++ L Sbjct: 22 IQEGDVVVDATMGNGYDTVYLAKKVGENGKVYAFDVQEEALKSTTKKVNKEELNNVELIL 81 Query: 90 ATFSQLQDYVPDKGVDGVVFDLGV 113 + YV ++ V +VF+LG Sbjct: 82 DGHQNMDKYVKEE-VSCIVFNLGY 104 >gi|54310619|ref|YP_131639.1| putative Sun protein [Photobacterium profundum SS9] gi|46915062|emb|CAG21837.1| Putative Sun protein [Photobacterium profundum SS9] Length = 431 Score = 45.2 bits (106), Expect = 0.014, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85 + L P G++ILD GG + + V+A+D D ++ E + K Sbjct: 235 AVDFLQPQAGELILDCCAAPGGKTAHIMERQPTAKVVAIDCDERRLTRVYENLARLKLDA 294 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 ++ A D+ + D ++ D S Sbjct: 295 TVLCADARYPADWWHGEKFDRILLDAPCS 323 >gi|90413777|ref|ZP_01221765.1| Putative Sun protein [Photobacterium profundum 3TCK] gi|90325246|gb|EAS41743.1| Putative Sun protein [Photobacterium profundum 3TCK] Length = 431 Score = 45.2 bits (106), Expect = 0.014, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 34/89 (38%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85 + L P ++ILD GG + + V+A+D D ++ E + K Sbjct: 235 AVDFLQPQADELILDCCAAPGGKTAHIMERQPTAKVVAIDCDERRLTRVHENLARLKLDA 294 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 ++ A D+ + D ++ D S Sbjct: 295 TVLCADARYPADWWHGEKFDRILLDAPCS 323 >gi|195978727|ref|YP_002123971.1| SAM-dependent methyltransferase [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195975432|gb|ACG62958.1| SAM-dependent methyltransferase [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 185 Score = 45.2 bits (106), Expect = 0.014, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 7/90 (7%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-E 83 L++V+ + A +DAT G G + + V A D A++ QE + Sbjct: 13 LKEVLDKQSIA-----VDATMGNGYDTAFLASLSQRVYAFDVQQQALTKTQERLEQQGLT 67 Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 L A Q+ YV + + +F+LG Sbjct: 68 NAELILAGHEQVDQYVKEP-IRAAIFNLGY 96 >gi|157148321|ref|YP_001455640.1| 23S rRNA 5-methyluridine methyltransferase [Citrobacter koseri ATCC BAA-895] gi|226725378|sp|A8ANZ1|RUMA_CITK8 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|157085526|gb|ABV15204.1| hypothetical protein CKO_04138 [Citrobacter koseri ATCC BAA-895] Length = 432 Score = 45.2 bits (106), Expect = 0.014, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 36/90 (40%), Gaps = 3/90 (3%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82 ++ + + L+ P +LD G G ++ ++V+ ++ P V G+E R Sbjct: 274 MVARALEWLDIQPDDRVLDLFCGMGNFTLPLATRAASVVGVEGVPALVEKGRENARRNGL 333 Query: 83 EQFSLFQATFSQ--LQDYVPDKGVDGVVFD 110 + + F + + G D ++ D Sbjct: 334 QNVTFFHENLEEDVTKQQWAKNGFDKILLD 363 >gi|157373174|ref|YP_001471774.1| sun protein [Shewanella sediminis HAW-EB3] gi|157315548|gb|ABV34646.1| sun protein [Shewanella sediminis HAW-EB3] Length = 426 Score = 45.2 bits (106), Expect = 0.014, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 2/86 (2%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQFSLF 88 LL P G+++LDA GG + + N ++A+D D + Q+ + L Sbjct: 235 LLAPIDGELVLDACAAPGGKTCHLLEQAPNIELVAVDFDANRLERVQQNLDRLSLNAKLI 294 Query: 89 QATFSQLQDYVPDKGVDGVVFDLGVS 114 + + + D ++ D S Sbjct: 295 HGDAADIDSWWQGDKFDRILLDAPCS 320 >gi|331092166|ref|ZP_08340996.1| hypothetical protein HMPREF9477_01639 [Lachnospiraceae bacterium 2_1_46FAA] gi|330401938|gb|EGG81512.1| hypothetical protein HMPREF9477_01639 [Lachnospiraceae bacterium 2_1_46FAA] Length = 186 Score = 45.2 bits (106), Expect = 0.015, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 41/105 (39%), Gaps = 19/105 (18%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFA 70 HH I +HV G+ +DAT G G + ++ V A D A Sbjct: 11 HHFIKNHV-------------KEGETCVDATAGNGNDTLLLAELVGEKGKVYAFDIQEQA 57 Query: 71 VSCGQETMRD--YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + +E + + + L + ++ + V ++ V +VF+ G Sbjct: 58 LRRTKERLEEKKLDSRAELILQSHEEIGEIVKEE-VSCIVFNFGY 101 >gi|148826444|ref|YP_001291197.1| hypothetical protein CGSHiEE_07455 [Haemophilus influenzae PittEE] gi|148716604|gb|ABQ98814.1| hypothetical protein CGSHiEE_07455 [Haemophilus influenzae PittEE] Length = 254 Score = 45.2 bits (106), Expect = 0.015, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 66/174 (37%), Gaps = 29/174 (16%) Query: 22 PVLLEKVIA---LLNPAP---GKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCG 74 P+ L ++I +L+ P GK +LD G GG+ + + + G + VI D + Sbjct: 24 PISLNEIIEKPTMLSLLPNLKGKKLLDLGCGTGGHLQLYLERGAAKVIGTDLSEKMLEQA 83 Query: 75 QETMR---DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++ ++ + +FSL+ +L + +P+ D + SS F+F Sbjct: 84 EKDLQKCGQFSGRFSLYHLPIEKLAE-LPESHFDVI-----TSS---------FAFHYIE 128 Query: 132 PLDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 +S +S++ + + +T E+ V R + Sbjct: 129 NFPALLSTIHDKLSSNGTLIFSQEHPITTCHKE--GERWEKNDKKQQVAYRLNH 180 >gi|283781585|ref|YP_003372340.1| methyltransferase type 11 [Pirellula staleyi DSM 6068] gi|283440038|gb|ADB18480.1| Methyltransferase type 11 [Pirellula staleyi DSM 6068] Length = 772 Score = 45.2 bits (106), Expect = 0.015, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 35/101 (34%), Gaps = 10/101 (9%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILD--ATFGAGGYSRSFCKMGSNVIALDRD 67 S + H + H +A PG +LD G G + + VI +D Sbjct: 221 SRSDAHVVRYH--------LAAQYIRPGDTVLDAACGLGYGSHLLARNTKAERVIGIDGS 272 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVV 108 PFA+ Q D +++ + + D V VV Sbjct: 273 PFAIDYAQANFTDERQRTEFRVGFLPECLAPIADHSVHAVV 313 >gi|90581174|ref|ZP_01236973.1| Putative Sun protein [Vibrio angustum S14] gi|90437695|gb|EAS62887.1| Putative Sun protein [Vibrio angustum S14] Length = 426 Score = 45.2 bits (106), Expect = 0.015, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85 + L P G++ILD GG + + V+A+D D + E + Sbjct: 235 AVDYLQPKAGELILDCCAAPGGKTAHIMEHVPSTKVVAIDCDENRLKRVHENLARLNLDA 294 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 ++ A + + D ++ D S Sbjct: 295 TVLCADARYPEQWWQGDKFDRILLDAPCS 323 >gi|315441657|ref|YP_004074534.1| methylase involved in ubiquinone/menaquinone biosynthesis [Mycobacterium sp. Spyr1] gi|315265312|gb|ADU02053.1| methylase involved in ubiquinone/menaquinone biosynthesis [Mycobacterium sp. Spyr1] Length = 208 Score = 45.2 bits (106), Expect = 0.015, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 9/82 (10%) Query: 46 GAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYV--PD 101 G G S+ + + ALD DP + ++ + + +L + + + L+ + D Sbjct: 47 GYG--SQLVLQRFGADRIDALDLDPTMIDRARKRLAPCGNRVTLVRGSATDLRAALDADD 104 Query: 102 KGVDGVVFDLGVSSM--QIDCG 121 D V FD G+ Q Sbjct: 105 DSYDAV-FDFGIIHHIPQWRTA 125 >gi|327279228|ref|XP_003224359.1| PREDICTED: trimethylguanosine synthase-like [Anolis carolinensis] Length = 943 Score = 45.2 bits (106), Expect = 0.015, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 2/64 (3%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96 +I+DA G GG S F G VIA+D DP + Y +Q F +L Sbjct: 785 IIVDAFCGVGGNSIQFALAGKRVIAIDIDPVKIRLAHNNAEVYGVADQIEFICGDFMKLA 844 Query: 97 DYVP 100 + Sbjct: 845 SSLK 848 >gi|125544200|gb|EAY90339.1| hypothetical protein OsI_11916 [Oryza sativa Indica Group] Length = 690 Score = 45.2 bits (106), Expect = 0.015, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 2/69 (2%) Query: 38 KVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQL 95 +++D G GG + F +VIA+D DP + C Q Y + + F + Sbjct: 513 GIVIDCFTGVGGNAIHFANKCRHVIAIDIDPQKIDCAQHNATVYGVHDHIDFVRGDFIHV 572 Query: 96 QDYVPDKGV 104 + + V Sbjct: 573 APRLKGETV 581 >gi|30017517|gb|AAP12939.1| putative PRIP-interacting protein, 5'-partial [Oryza sativa Japonica Group] Length = 282 Score = 45.2 bits (106), Expect = 0.015, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 2/69 (2%) Query: 38 KVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQL 95 +++D G GG + F +VIA+D DP + C Q Y + + F + Sbjct: 105 GIVIDCFTGVGGNAIHFANKCRHVIAIDIDPQKIDCAQHNATVYGVHDHIDFVRGDFIHV 164 Query: 96 QDYVPDKGV 104 + + V Sbjct: 165 APRLKGETV 173 >gi|115453397|ref|NP_001050299.1| Os03g0396900 [Oryza sativa Japonica Group] gi|14029021|gb|AAK52562.1|AC079853_15 Unknown protein [Oryza sativa Japonica Group] gi|108708634|gb|ABF96429.1| WW domain-containing protein, putative, expressed [Oryza sativa Japonica Group] gi|113548770|dbj|BAF12213.1| Os03g0396900 [Oryza sativa Japonica Group] gi|215737194|dbj|BAG96123.1| unnamed protein product [Oryza sativa Japonica Group] gi|222625074|gb|EEE59206.1| hypothetical protein OsJ_11156 [Oryza sativa Japonica Group] Length = 690 Score = 45.2 bits (106), Expect = 0.015, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 2/69 (2%) Query: 38 KVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQL 95 +++D G GG + F +VIA+D DP + C Q Y + + F + Sbjct: 513 GIVIDCFTGVGGNAIHFANKCRHVIAIDIDPQKIDCAQHNATVYGVHDHIDFVRGDFIHV 572 Query: 96 QDYVPDKGV 104 + + V Sbjct: 573 APRLKGETV 581 >gi|16272849|ref|NP_439072.1| hypothetical protein HI0912 [Haemophilus influenzae Rd KW20] gi|145638267|ref|ZP_01793877.1| hypothetical protein CGSHiII_05834 [Haemophilus influenzae PittII] gi|260580001|ref|ZP_05847831.1| SAM-dependent methyltransferase [Haemophilus influenzae RdAW] gi|319897601|ref|YP_004135798.1| sam dependent methyltransferase [Haemophilus influenzae F3031] gi|1175329|sp|P44074|Y912_HAEIN RecName: Full=Uncharacterized protein HI_0912 gi|1573933|gb|AAC22579.1| predicted coding region HI0912 [Haemophilus influenzae Rd KW20] gi|145272596|gb|EDK12503.1| hypothetical protein CGSHiII_05834 [Haemophilus influenzae PittII] gi|260093285|gb|EEW77218.1| SAM-dependent methyltransferase [Haemophilus influenzae RdAW] gi|309751421|gb|ADO81405.1| Conserved hypothetical protein [Haemophilus influenzae R2866] gi|309973592|gb|ADO96793.1| Conserved hypothetical protein [Haemophilus influenzae R2846] gi|317433107|emb|CBY81481.1| conserved SAM dependent methyltransferase [Haemophilus influenzae F3031] Length = 254 Score = 45.2 bits (106), Expect = 0.015, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 66/174 (37%), Gaps = 29/174 (16%) Query: 22 PVLLEKVIA---LLNPAP---GKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCG 74 P+ L ++I +L+ P GK +LD G GG+ + + + G + VI D + Sbjct: 24 PISLNEIIEKPTMLSLLPNLKGKKLLDLGCGTGGHLQLYLERGAAKVIGTDLSEKMLEQA 83 Query: 75 QETMR---DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++ ++ + +FSL+ +L + +P+ D + SS F+F Sbjct: 84 EKDLQKCGQFSGRFSLYHLPIEKLAE-LPESHFDVI-----TSS---------FAFHYIE 128 Query: 132 PLDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 +S +S++ + + +T E+ V R + Sbjct: 129 NFPTLLSTIHDKLSSNGTLIFSQEHPITTCHKE--GERWEKNDKKQQVAYRLNH 180 >gi|311031210|ref|ZP_07709300.1| putative rRNA methylase [Bacillus sp. m3-13] Length = 190 Score = 45.2 bits (106), Expect = 0.016, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 40/91 (43%), Gaps = 10/91 (10%) Query: 32 LNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK--EQF 85 L G + +D T G G+ F +V D A+S + + ++ + Sbjct: 16 LALTEGDIAVDCTVGN-GHDTLFLSELVGENGHVFGFDIQAEALSNTKTLLAEHGVESRV 74 Query: 86 SLFQATFSQLQDYVPDKG---VDGVVFDLGV 113 +LF+ + +++ + +P + + G +F+LG Sbjct: 75 TLFEDSHAKVLERIPSEKHHLIRGAIFNLGY 105 >gi|145636957|ref|ZP_01792621.1| hypothetical protein CGSHiHH_04625 [Haemophilus influenzae PittHH] gi|145269815|gb|EDK09754.1| hypothetical protein CGSHiHH_04625 [Haemophilus influenzae PittHH] Length = 254 Score = 45.2 bits (106), Expect = 0.016, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 66/174 (37%), Gaps = 29/174 (16%) Query: 22 PVLLEKVIA---LLNPAP---GKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCG 74 P+ L ++I +L+ P GK +LD G GG+ + + + G + VI D + Sbjct: 24 PISLNEIIEKPTMLSLLPNLKGKKLLDLGCGTGGHLQLYLERGAAKVIGTDLSEKMLEQA 83 Query: 75 QETMR---DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++ ++ + +FSL+ +L + +P+ D + SS F+F Sbjct: 84 EKDLQKCGQFSGRFSLYHLPIEKLAE-LPESHFDVI-----TSS---------FAFHYIE 128 Query: 132 PLDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 +S +S++ + + +T E+ V R + Sbjct: 129 NFPTLLSTIHDKLSSNGTLIFSQEHPITTCHKE--GERWEKNDKKQQVAYRLNH 180 >gi|68249498|ref|YP_248610.1| hypothetical protein NTHI1079 [Haemophilus influenzae 86-028NP] gi|68057697|gb|AAX87950.1| conserved hypothetical SAM-dependent methyltransferase [Haemophilus influenzae 86-028NP] Length = 254 Score = 45.2 bits (106), Expect = 0.016, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 66/174 (37%), Gaps = 29/174 (16%) Query: 22 PVLLEKVIA---LLNPAP---GKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCG 74 P+ L ++I +L+ P GK +LD G GG+ + + + G + VI D + Sbjct: 24 PISLNEIIEKPTMLSLLPNLKGKKLLDLGCGTGGHLQLYLERGAAKVIGTDLSEKMLEQA 83 Query: 75 QETMR---DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++ ++ + +FSL+ +L + +P+ D + SS F+F Sbjct: 84 EKDLQKCGQFSGRFSLYHLPIEKLAE-LPESHFDVI-----TSS---------FAFHYIE 128 Query: 132 PLDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 +S +S++ + + +T E+ V R + Sbjct: 129 NFPTLLSTIHDKLSSNGTLIFSQEHPITTCHKE--GERWEKNDKKQQVAYRLNH 180 >gi|224029597|gb|ACN33874.1| unknown [Zea mays] Length = 589 Score = 45.2 bits (106), Expect = 0.016, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 2/65 (3%) Query: 38 KVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQL 95 V++D G GG + F K +VIA+D DP + C Y + F + Sbjct: 430 GVMIDCFTGVGGNAIQFAKKCKHVIAVDIDPQKIDCAHHNASIYGVNDHIDFIVGDFIHI 489 Query: 96 QDYVP 100 ++ Sbjct: 490 APHLK 494 >gi|303242307|ref|ZP_07328793.1| putative rRNA methylase [Acetivibrio cellulolyticus CD2] gi|302590146|gb|EFL59908.1| putative rRNA methylase [Acetivibrio cellulolyticus CD2] Length = 189 Score = 45.2 bits (106), Expect = 0.016, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 6/85 (7%) Query: 34 PAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMR--DYKEQFSLF 88 G ++DAT G G + K+ +V + D A+ E + D +++ L Sbjct: 19 VEEGDTVIDATAGNGSDTVFLAKLVGESGHVYSFDVQQIALDRTAEKLDSLDLRDRVDLI 78 Query: 89 QATFSQLQDYVPDKGVDGVVFDLGV 113 L +YV V V+F+LG Sbjct: 79 NDGHENLDNYVKS-KVKAVMFNLGY 102 >gi|326331617|ref|ZP_08197905.1| methyltransferase type 11 [Nocardioidaceae bacterium Broad-1] gi|325950416|gb|EGD42468.1| methyltransferase type 11 [Nocardioidaceae bacterium Broad-1] Length = 255 Score = 45.2 bits (106), Expect = 0.016, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 26/56 (46%) Query: 30 ALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQF 85 L G+ +LD G G ++ + G++VIA D+D ++ E +++ Sbjct: 7 DRLGLKAGERVLDMGAGGGRHAFEMYRRGADVIAFDQDAEELAKVSEWFFAMRDEV 62 >gi|86147131|ref|ZP_01065447.1| Sun protein [Vibrio sp. MED222] gi|218711000|ref|YP_002418621.1| ribosomal RNA small subunit methyltransferase B [Vibrio splendidus LGP32] gi|85835015|gb|EAQ53157.1| Sun protein [Vibrio sp. MED222] gi|218324019|emb|CAV20381.1| Ribosomal RNA small subunit methyltransferase B [Vibrio splendidus LGP32] Length = 426 Score = 45.2 bits (106), Expect = 0.016, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 34/89 (38%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQETMRDYKEQF 85 + L P G++ILD GG + + + V+A+D D + + + + + Sbjct: 235 SVDFLTPKDGELILDCCAAPGGKTAHILEHTQDTEVVAIDSDIKRLDRVYDNLERLQLRA 294 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + +++ D ++ D S Sbjct: 295 DVICGDARYPEEWWTGSQFDRILLDAPCS 323 >gi|84393439|ref|ZP_00992196.1| Sun protein [Vibrio splendidus 12B01] gi|84375955|gb|EAP92845.1| Sun protein [Vibrio splendidus 12B01] Length = 426 Score = 45.2 bits (106), Expect = 0.016, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 34/89 (38%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQETMRDYKEQF 85 + L P G++ILD GG + + + V+A+D D + + + + + Sbjct: 235 SVDFLTPKDGELILDCCAAPGGKTAHILEHTQDTEVVAIDSDIKRLDRVYDNLERLQLRA 294 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + +++ D ++ D S Sbjct: 295 DVICGDARYPEEWWTGSQFDRILLDAPCS 323 >gi|301169630|emb|CBW29231.1| conserved hypothetical SAM-dependent methyltransferase [Haemophilus influenzae 10810] Length = 254 Score = 45.2 bits (106), Expect = 0.016, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 66/174 (37%), Gaps = 29/174 (16%) Query: 22 PVLLEKVIA---LLNPAP---GKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCG 74 P+ L ++I +L+ P GK +LD G GG+ + + + G + VI D + Sbjct: 24 PISLNEIIEKPTMLSLLPNLKGKKLLDLGCGTGGHLQLYLERGAAKVIGTDLSEKMLEQA 83 Query: 75 QETMR---DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++ ++ + +FSL+ +L + +P+ D + SS F+F Sbjct: 84 EKDLQKCGQFSGRFSLYHLPIEKLAE-LPESHFDVI-----TSS---------FAFHYIE 128 Query: 132 PLDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 +S +S++ + + +T E+ V R + Sbjct: 129 NFPTLLSTIHDKLSSNGALIFSQEHPITTCHKE--GERWEKNDKKQQVAYRLNH 180 >gi|145632289|ref|ZP_01788024.1| hypothetical protein CGSHi3655_07539 [Haemophilus influenzae 3655] gi|145634079|ref|ZP_01789790.1| preprotein translocase subunit SecA [Haemophilus influenzae PittAA] gi|229844033|ref|ZP_04464174.1| hypothetical protein CGSHi6P18H1_06336 [Haemophilus influenzae 6P18H1] gi|144987196|gb|EDJ93726.1| hypothetical protein CGSHi3655_07539 [Haemophilus influenzae 3655] gi|145268523|gb|EDK08516.1| preprotein translocase subunit SecA [Haemophilus influenzae PittAA] gi|229813027|gb|EEP48715.1| hypothetical protein CGSHi6P18H1_06336 [Haemophilus influenzae 6P18H1] Length = 254 Score = 45.2 bits (106), Expect = 0.017, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 66/174 (37%), Gaps = 29/174 (16%) Query: 22 PVLLEKVIA---LLNPAP---GKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCG 74 P+ L ++I +L+ P GK +LD G GG+ + + + G + VI D + Sbjct: 24 PISLNEIIEKPTMLSLLPNLKGKKLLDLGCGTGGHLQLYLERGAAKVIGTDLSEKMLEQA 83 Query: 75 QETMR---DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++ ++ + +FSL+ +L + +P+ D + SS F+F Sbjct: 84 EKDLQKCGQFSGRFSLYHLPIEKLAE-LPESHFDVI-----TSS---------FAFHYIE 128 Query: 132 PLDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 +S +S++ + + +T E+ V R + Sbjct: 129 NFPALLSTIHDKLSSNGTLIFSQEHPITTCHKE--GERWEKNDKKQQVAYRLNH 180 >gi|163942480|ref|YP_001647364.1| putative rRNA methylase [Bacillus weihenstephanensis KBAB4] gi|163864677|gb|ABY45736.1| putative rRNA methylase [Bacillus weihenstephanensis KBAB4] Length = 190 Score = 45.2 bits (106), Expect = 0.017, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 30/90 (33%), Gaps = 10/90 (11%) Query: 33 NPAPGKVILDATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFS 86 G +DAT G G+ V D A+ ++ + E+ Sbjct: 17 AVKEGDYAVDATLGN-GHDTCFLAEIVGDNGKVFGFDIQKEAIESSTIRLKKKELFERTV 75 Query: 87 LFQATFSQLQDYVPDK---GVDGVVFDLGV 113 L + L +P+ V G +F+LG Sbjct: 76 LVHDSHDTLLSVLPEDAKGKVTGAIFNLGY 105 >gi|324505112|gb|ADY42202.1| Trimethylguanosine synthase [Ascaris suum] Length = 630 Score = 44.8 bits (105), Expect = 0.017, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 2/75 (2%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82 + E + + G +I+DA G GG + F G+ VIA+D DP + C + Y Sbjct: 434 MAEHIADRMVRREGALIIDAFTGVGGNAIQFALKGAFVIAIDLDPVRLRCAARNAQVYGV 493 Query: 83 -EQFSLFQATFSQLQ 96 ++ + F Sbjct: 494 ADRINFICTDFFHFA 508 >gi|312382192|gb|EFR27733.1| hypothetical protein AND_05214 [Anopheles darlingi] Length = 1097 Score = 44.8 bits (105), Expect = 0.017, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 42/118 (35%), Gaps = 12/118 (10%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96 +I+DA G GG + F VIA+D DP + + Y ++ F QL Sbjct: 937 LIVDAFCGCGGNTIQFAFTCQKVIAIDIDPRKIEMAKHNAAVYGVADRIEFITGDFVQLA 996 Query: 97 DYVPDK-GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANV 153 + D V S S+ K D+ S + ASD++ A Sbjct: 997 AAGGGRLKADTVFL-----SPPWGGP----SYMKDEVYDLEQSLLPVPASDLMRAAQQ 1045 >gi|73999118|ref|XP_857350.1| PREDICTED: similar to PRIP-interacting protein PIPMT isoform 3 [Canis familiaris] Length = 267 Score = 44.8 bits (105), Expect = 0.017, Method: Composition-based stats. Identities = 32/172 (18%), Positives = 60/172 (34%), Gaps = 23/172 (13%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96 +++DA G GG + F G VIA+D DP + + Y ++ F L Sbjct: 107 IVVDAFCGVGGNTIQFALTGKRVIAIDIDPVKIDLARNNAEVYGIADKIEFICGDFLLLA 166 Query: 97 DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR--MSCSGISASDVVNQANVK 154 ++ D+ S D + + D+R MS G + + Sbjct: 167 SHLK--------ADVVFLSPPWGGPD----YATAETFDIRTMMSPDGFEIFRLSQKIT-N 213 Query: 155 DLTRILGILGEEKQASRIAH-----AIVKRRQSAPFQT-TQDLSSLIQKTVY 200 ++ L + Q + +A I + + +T T LI+++ Sbjct: 214 NIVYFLPRNADIDQVASLAGPGGQVEIEQNFLNNKLKTITAYFGDLIRRSAP 265 >gi|73999114|ref|XP_535077.2| PREDICTED: similar to PRIP-interacting protein PIPMT isoform 1 [Canis familiaris] Length = 852 Score = 44.8 bits (105), Expect = 0.017, Method: Composition-based stats. Identities = 32/172 (18%), Positives = 60/172 (34%), Gaps = 23/172 (13%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96 +++DA G GG + F G VIA+D DP + + Y ++ F L Sbjct: 692 IVVDAFCGVGGNTIQFALTGKRVIAIDIDPVKIDLARNNAEVYGIADKIEFICGDFLLLA 751 Query: 97 DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR--MSCSGISASDVVNQANVK 154 ++ D+ S D + + D+R MS G + + Sbjct: 752 SHLK--------ADVVFLSPPWGGPD----YATAETFDIRTMMSPDGFEIFRLSQKIT-N 798 Query: 155 DLTRILGILGEEKQASRIAH-----AIVKRRQSAPFQT-TQDLSSLIQKTVY 200 ++ L + Q + +A I + + +T T LI+++ Sbjct: 799 NIVYFLPRNADIDQVASLAGPGGQVEIEQNFLNNKLKTITAYFGDLIRRSAP 850 >gi|328773183|gb|EGF83220.1| hypothetical protein BATDEDRAFT_21725 [Batrachochytrium dendrobatidis JAM81] Length = 304 Score = 44.8 bits (105), Expect = 0.018, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 32/87 (36%), Gaps = 5/87 (5%) Query: 38 KVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQL 95 KV++D G GG + F VIA+D DP + C + Y ++ F +L Sbjct: 140 KVMVDGFCGVGGNAIQFAMTCDKVIAIDIDPVRLECARHNAAVYGVQDKIEFICGDFMEL 199 Query: 96 QDYVPDKGVDGVVFDLGVSSMQIDCGD 122 P DGV Q D Sbjct: 200 A---PTIKADGVFMSPPWGGPQYIQAD 223 >gi|322411186|gb|EFY02094.1| SAM-dependent methyltransferase [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 184 Score = 44.8 bits (105), Expect = 0.018, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 34/90 (37%), Gaps = 7/90 (7%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-E 83 L +V+ V++DAT G G + + V A D A+ E + Sbjct: 13 LAEVMD-----KSSVVVDATMGNGNDTAFLAQSAKKVYAFDVQEQAIRKTSERLAQLGLS 67 Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 L A + +YV + V +F+LG Sbjct: 68 NAELILAGHEAVDEYVTEP-VRAAIFNLGY 96 >gi|255538280|ref|XP_002510205.1| conserved hypothetical protein [Ricinus communis] gi|223550906|gb|EEF52392.1| conserved hypothetical protein [Ricinus communis] Length = 263 Score = 44.8 bits (105), Expect = 0.018, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 2/67 (2%) Query: 40 ILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQD 97 I+D G GG + F + +VIA+D DP + Y +Q F L Sbjct: 100 IIDCFTGVGGNAIQFAQRCKHVIAIDVDPKKIDYAYHNASIYGVADQIDFITGDFFNLAP 159 Query: 98 YVPDKGV 104 + V Sbjct: 160 KLKADTV 166 >gi|89074758|ref|ZP_01161216.1| Putative Sun protein [Photobacterium sp. SKA34] gi|89049522|gb|EAR55083.1| Putative Sun protein [Photobacterium sp. SKA34] Length = 426 Score = 44.8 bits (105), Expect = 0.018, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 31/89 (34%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85 + L P ++ILD GG + + V+A+D D + E + Sbjct: 235 AVDYLQPKADELILDCCAAPGGKTAHIMEHVPSTKVVAIDCDENRLKRVHENLARLNLDA 294 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 ++ A + + D ++ D S Sbjct: 295 TVLCADARYPEQWWQGDKFDRILLDAPCS 323 >gi|297180807|gb|ADI17013.1| tRNA and rRNA cytosine-c5-methylases [uncultured Vibrionales bacterium HF0010_22E23] Length = 426 Score = 44.8 bits (105), Expect = 0.019, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQF 85 + L P G++ILD GG + + N V+A+D D ++ +E + Sbjct: 235 SVNYLQPKAGELILDCCAAPGGKTCHILEHQPNAKVVAIDADANRLTRVEENLGRLNLNA 294 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + ++ + D ++ D S Sbjct: 295 DVICGDARSPDEWWNGEDFDRILLDAPCS 323 >gi|73999116|ref|XP_857311.1| PREDICTED: similar to PRIP-interacting protein PIPMT isoform 2 [Canis familiaris] Length = 330 Score = 44.8 bits (105), Expect = 0.019, Method: Composition-based stats. Identities = 32/172 (18%), Positives = 60/172 (34%), Gaps = 23/172 (13%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96 +++DA G GG + F G VIA+D DP + + Y ++ F L Sbjct: 170 IVVDAFCGVGGNTIQFALTGKRVIAIDIDPVKIDLARNNAEVYGIADKIEFICGDFLLLA 229 Query: 97 DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR--MSCSGISASDVVNQANVK 154 ++ D+ S D + + D+R MS G + + Sbjct: 230 SHLK--------ADVVFLSPPWGGPD----YATAETFDIRTMMSPDGFEIFRLSQKIT-N 276 Query: 155 DLTRILGILGEEKQASRIAH-----AIVKRRQSAPFQT-TQDLSSLIQKTVY 200 ++ L + Q + +A I + + +T T LI+++ Sbjct: 277 NIVYFLPRNADIDQVASLAGPGGQVEIEQNFLNNKLKTITAYFGDLIRRSAP 328 >gi|307213126|gb|EFN88648.1| Trimethylguanosine synthase-like protein [Harpegnathos saltator] Length = 978 Score = 44.8 bits (105), Expect = 0.019, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 2/68 (2%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96 +I+DA GAGG + F + VIA+D DP + + + Y + F +L Sbjct: 813 IIIDAFCGAGGNTIQFALTCNKVIAIDIDPIKIELAKHNAKIYGVDNKIEFIVGNFLELA 872 Query: 97 DYVPDKGV 104 + V Sbjct: 873 PKLEADVV 880 >gi|330447314|ref|ZP_08310964.1| ribosomal RNA small subunit methyltransferase B [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491505|dbj|GAA05461.1| ribosomal RNA small subunit methyltransferase B [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 426 Score = 44.8 bits (105), Expect = 0.019, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85 + L P G++ILD GG + + V+A+D D + E + Sbjct: 235 AVDYLQPQAGELILDCCAAPGGKTAHIMEHVPSTKVVAIDCDENRLKRVHENLARLNLDA 294 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 ++ A + + D ++ D S Sbjct: 295 TVLCADARYPEQWWKGDKFDRILLDAPCS 323 >gi|322367983|ref|ZP_08042552.1| Methyltransferase type 11 [Haladaptatus paucihalophilus DX253] gi|320551999|gb|EFW93644.1| Methyltransferase type 11 [Haladaptatus paucihalophilus DX253] Length = 207 Score = 44.8 bits (105), Expect = 0.019, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 29/73 (39%), Gaps = 1/73 (1%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83 + ++ +++L+ +LD G G + + NV LD+ + E + Y Sbjct: 33 MRDEALSMLDIDEDDTVLDVGCGTGFGTEGLLQHTENVHGLDQSVHQLEKAWEKLGKYDP 92 Query: 84 QFSLFQATFSQLQ 96 S ++ +L Sbjct: 93 -VSFYRGDAERLP 104 >gi|320547357|ref|ZP_08041648.1| rRNA methylase [Streptococcus equinus ATCC 9812] gi|320448055|gb|EFW88807.1| rRNA methylase [Streptococcus equinus ATCC 9812] Length = 182 Score = 44.8 bits (105), Expect = 0.020, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 33/90 (36%), Gaps = 7/90 (7%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-E 83 L +V+ G V +DAT G G + + V A D A+ QE + Sbjct: 13 LAEVLD-----DGAVAVDATMGNGNDTAFLAQHAKKVYAFDVQEQALKSTQERLEKQAIS 67 Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 L L YV + + +F+LG Sbjct: 68 NAQLILDGHQNLDKYVSEP-IRAAIFNLGY 96 >gi|167621966|ref|YP_001672260.1| sun protein [Shewanella halifaxensis HAW-EB4] gi|167351988|gb|ABZ74601.1| sun protein [Shewanella halifaxensis HAW-EB4] Length = 426 Score = 44.8 bits (105), Expect = 0.020, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 35/86 (40%), Gaps = 2/86 (2%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQFSLF 88 LL P +++LDA GG S ++ + ++A+D D + Q+ + + L Sbjct: 235 LLAPQGDELVLDACAAPGGKSCHLLELAPDIKLVAVDFDAKRLERVQQNLDRLSLKAELV 294 Query: 89 QATFSQLQDYVPDKGVDGVVFDLGVS 114 + + + D ++ D S Sbjct: 295 HGDAANIDSWWQGDKFDRILLDAPCS 320 >gi|145641900|ref|ZP_01797474.1| conserved hypothetical SAM-dependent methyltransferase [Haemophilus influenzae R3021] gi|145273379|gb|EDK13251.1| conserved hypothetical SAM-dependent methyltransferase [Haemophilus influenzae 22.4-21] Length = 177 Score = 44.8 bits (105), Expect = 0.020, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 46/96 (47%), Gaps = 11/96 (11%) Query: 22 PVLLEKVIA---LLNPAP---GKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCG 74 P+ L ++I +L+ P GK +LD G GG+ + + + G + VI D + Sbjct: 24 PISLNEIIEKPTMLSLLPNLKGKKLLDLGCGTGGHLQLYLERGAAKVIGTDLSEKMLEQA 83 Query: 75 QETMR---DYKEQFSLFQATFSQLQDYVPDKGVDGV 107 ++ ++ + +FSL+ +L + +P+ D + Sbjct: 84 EKDLQKCGQFSGRFSLYHLPIEKLAE-LPESHFDVI 118 >gi|73662312|ref|YP_301093.1| hypothetical protein SSP1003 [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72494827|dbj|BAE18148.1| conserved hypothetical protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 186 Score = 44.8 bits (105), Expect = 0.020, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 6/85 (7%) Query: 34 PAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91 + +++DAT G G + + NV A D A+ Q + D+ ++ Q + Sbjct: 18 VSDDSIVIDATCGNGNDTHFLAQQVPNGNVYAFDIQDEAIKQTQLKIHDF-NNVTIVQDS 76 Query: 92 FSQLQDYVPDK---GVDGVVFDLGV 113 + +Q Y+P+ +D +F+LG Sbjct: 77 HANIQSYIPNYQQGKIDAAIFNLGY 101 >gi|327462947|gb|EGF09268.1| rRNA methylase [Streptococcus sanguinis SK1] Length = 183 Score = 44.8 bits (105), Expect = 0.021, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 35/92 (38%), Gaps = 6/92 (6%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82 + +A + +++DAT G G+ + ++ V A D AV ++ + + Sbjct: 7 MAHAFLAEVVTKED-IVVDATMGN-GHDTLFLAQLAKQVYAFDIQEQAVEKTRQRLAEAD 64 Query: 83 -EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + L + + Y +F+LG Sbjct: 65 LDNVQLILSGHETMDQYTDHFK--AAIFNLGY 94 >gi|294501591|ref|YP_003565291.1| putative rRNA methylase [Bacillus megaterium QM B1551] gi|295706939|ref|YP_003600014.1| putative rRNA methylase [Bacillus megaterium DSM 319] gi|294351528|gb|ADE71857.1| putative rRNA methylase [Bacillus megaterium QM B1551] gi|294804598|gb|ADF41664.1| putative rRNA methylase [Bacillus megaterium DSM 319] Length = 189 Score = 44.8 bits (105), Expect = 0.021, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 9/89 (10%) Query: 33 NPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDY--KEQFS 86 A G V +DAT G G+ F +V D P A+ Q+ + ++ + + + Sbjct: 17 AVAQGDVAIDATAGN-GHDTLFLANLVGDTGHVYGFDIQPQAIQATQQRLTEHHVENRVT 75 Query: 87 LFQATFSQLQDYVPDKG--VDGVVFDLGV 113 L Q + S + V G VF+LG Sbjct: 76 LIQESHSNINMLPRSIKGRVTGAVFNLGY 104 >gi|57641870|ref|YP_184348.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus kodakarensis KOD1] gi|57160194|dbj|BAD86124.1| tRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family [Thermococcus kodakarensis KOD1] Length = 450 Score = 44.8 bits (105), Expect = 0.021, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 33/83 (39%), Gaps = 4/83 (4%) Query: 32 LNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQFSL 87 L P PG+ ++D GG + + + A D D + +E ++ E + Sbjct: 246 LAPKPGETVVDLAAAPGGKTAHMAELMENRGKIYAFDVDSARIKRMKEVLKRTGVEIAEV 305 Query: 88 FQATFSQLQDYVPDKGVDGVVFD 110 +A + + ++ D V+ D Sbjct: 306 IKADGRNAPELLGEEIADRVLLD 328 >gi|171780242|ref|ZP_02921146.1| hypothetical protein STRINF_02030 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281590|gb|EDT47025.1| hypothetical protein STRINF_02030 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 182 Score = 44.8 bits (105), Expect = 0.022, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 33/90 (36%), Gaps = 7/90 (7%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-E 83 L +V+ G V +DAT G G + + V A D A+ QE + Sbjct: 13 LAEVLD-----DGAVAVDATMGNGNDTAFLAQHAKKVYAFDVQEQALKSTQERLEKQAIS 67 Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 L L YV + + +F+LG Sbjct: 68 NAQLILDGHQNLDKYVSEP-IRAAIFNLGY 96 >gi|237746404|ref|ZP_04576884.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS] gi|229377755|gb|EEO27846.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS] Length = 283 Score = 44.8 bits (105), Expect = 0.022, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 28/50 (56%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77 V+ LL P G+ ILD GAG ++ K G V+ +D +P AV+ +E Sbjct: 59 VLELLAPKAGERILDLGCGAGVWAEEMMKRGCEVVGVDINPQAVAAARER 108 >gi|329117650|ref|ZP_08246367.1| putative rRNA methylase [Streptococcus parauberis NCFD 2020] gi|326908055|gb|EGE54969.1| putative rRNA methylase [Streptococcus parauberis NCFD 2020] Length = 180 Score = 44.8 bits (105), Expect = 0.022, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 8/90 (8%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETM-RDYKE 83 L++V+ + +DAT G G + F + VIA D A+ ++ + + Sbjct: 12 LKEVL-----TQDSLFVDATMGNGNDTLYFAPLVKEVIAFDIQEEALLATRKKLDAIHVN 66 Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 L + Y +DG +F+LG Sbjct: 67 NVQLILDGHQHVDKY--TDKIDGAIFNLGY 94 >gi|312868433|ref|ZP_07728633.1| putative rRNA methylase [Streptococcus parasanguinis F0405] gi|311096178|gb|EFQ54422.1| putative rRNA methylase [Streptococcus parasanguinis F0405] Length = 185 Score = 44.4 bits (104), Expect = 0.022, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 10/91 (10%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSNVIALDRDPFAVSCGQETMRDYK- 82 LE+VI V++DAT G G+ +F ++ V A D A+ QE + Sbjct: 12 LEEVI----TKED-VVVDATMGN-GHDTAFLAQLAGQVYAFDIQEQALVNTQERLEKLGL 65 Query: 83 EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + L + YV +F+LG Sbjct: 66 QHVQLILDGHQHVDQYVETLK--AAIFNLGY 94 >gi|260583635|ref|ZP_05851383.1| SAM-dependent methyltransferase [Granulicatella elegans ATCC 700633] gi|260158261|gb|EEW93329.1| SAM-dependent methyltransferase [Granulicatella elegans ATCC 700633] Length = 186 Score = 44.4 bits (104), Expect = 0.022, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 36/94 (38%), Gaps = 11/94 (11%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYS---RSFCKMGSNVIALDRDPFAVSCGQETMRDY 81 L++ PG ++DAT G G + + V A D A+ E +++ Sbjct: 13 LQEC-----IKPGDCVIDATMGNGNDTIFLSKLVQSEGKVFAFDIQEAALIRTNEKIQEL 67 Query: 82 K--EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 E L + + L YV + +F+LG Sbjct: 68 DTKENIHLICDSHANLSTYVQQP-IQAAIFNLGY 100 >gi|322373579|ref|ZP_08048115.1| putative rRNA methylase [Streptococcus sp. C150] gi|321278621|gb|EFX55690.1| putative rRNA methylase [Streptococcus sp. C150] Length = 182 Score = 44.4 bits (104), Expect = 0.023, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 7/90 (7%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-E 83 L +V+ G + +DAT G G + + V A D A+ + + D K + Sbjct: 13 LAQVLD-----DGSIAVDATMGNGNDTAFLAGLAKKVYAFDVQEQALEKTSQRLSDLKID 67 Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 L L YV + + +F+LG Sbjct: 68 NAELILDGHENLDRYVTEP-IRAAIFNLGY 96 >gi|319775156|ref|YP_004137644.1| SAM dependent methyltransferase [Haemophilus influenzae F3047] gi|329122926|ref|ZP_08251497.1| metallothionein SmtA [Haemophilus aegyptius ATCC 11116] gi|317449747|emb|CBY85954.1| conserved SAM dependent methyltransferase [Haemophilus influenzae F3047] gi|327471857|gb|EGF17297.1| metallothionein SmtA [Haemophilus aegyptius ATCC 11116] Length = 254 Score = 44.4 bits (104), Expect = 0.023, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 46/96 (47%), Gaps = 11/96 (11%) Query: 22 PVLLEKVIA---LLNPAP---GKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCG 74 P+ L ++I +L+ P GK +LD G GG+ + + + G + VI D + Sbjct: 24 PISLNEIIEKPTMLSLLPNLKGKKLLDLGCGTGGHLQLYLERGAAKVIGTDLSEKMLEQA 83 Query: 75 QETMR---DYKEQFSLFQATFSQLQDYVPDKGVDGV 107 ++ ++ + +FSL+ +L + +P+ D + Sbjct: 84 EKDLQKCGQFSGRFSLYHLPIEKLAE-LPESHFDVI 118 >gi|319637816|ref|ZP_07992582.1| hypothetical protein HMPREF0604_00205 [Neisseria mucosa C102] gi|317400971|gb|EFV81626.1| hypothetical protein HMPREF0604_00205 [Neisseria mucosa C102] Length = 189 Score = 44.4 bits (104), Expect = 0.023, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 13/96 (13%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMR 79 LL + + G LDAT G G+ V A D A++ Q ++ Sbjct: 13 LLRQAL-----KAGGRALDATAGN-GHDTLLLAQLVGETGKVWAFDVQSKALAQTQGRLK 66 Query: 80 D--YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + + +L L Y+ + +D VF+ G Sbjct: 67 ENGVDGRVALIHDGHENLSSYIDEP-LDAAVFNFGW 101 >gi|254564064|ref|YP_003071159.1| hypothetical protein METDI5751 [Methylobacterium extorquens DM4] gi|254271342|emb|CAX27354.1| putative protein-L-isoaspartate O-methyltransferase [Methylobacterium extorquens DM4] Length = 216 Score = 44.4 bits (104), Expect = 0.023, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 4/61 (6%) Query: 22 PVLLEKVIALLNPAPGKVILDATFGAG-GYSRSFCK-MGSNVIALDRDPFAVSCGQETMR 79 P+LL ++I L PG LD G G GY + + +G+ V+AL+ DP ++ +E + Sbjct: 68 PMLLARLIQALKIRPGTRALD--VGTGYGYGAAMLRQLGAEVVALESDPDLIAAARERLG 125 Query: 80 D 80 D Sbjct: 126 D 126 >gi|297616627|ref|YP_003701786.1| rRNA methylase [Syntrophothermus lipocalidus DSM 12680] gi|297144464|gb|ADI01221.1| putative rRNA methylase [Syntrophothermus lipocalidus DSM 12680] Length = 193 Score = 44.4 bits (104), Expect = 0.023, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 43/96 (44%), Gaps = 11/96 (11%) Query: 23 VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETM- 78 VL+ V+ PG ++DAT G G + ++ V+A+D P AV + + Sbjct: 15 VLIHTVVE-----PGDFVVDATCGNGKDTVFLARLVGEKGKVLAIDVQPLAVERTKSLLQ 69 Query: 79 -RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + +L + S ++ Y+ + V +F+LG Sbjct: 70 KEGLGSRVTLVRDDHSLIRHYLREP-VKAAMFNLGY 104 >gi|159480252|ref|XP_001698198.1| hypothetical protein CHLREDRAFT_41764 [Chlamydomonas reinhardtii] gi|158273696|gb|EDO99483.1| predicted protein [Chlamydomonas reinhardtii] Length = 221 Score = 44.4 bits (104), Expect = 0.023, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 37/100 (37%), Gaps = 23/100 (23%) Query: 30 ALLNPAPGKVILDA--------TFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81 L+PAPG ++D T + + + VIA D+DP ++ ++ Sbjct: 13 HALSPAPGWTVVDCCAAPGNKTT-----HLAAIMRNKGRVIAFDKDPKRLA----RLKAN 63 Query: 82 KEQ-----FSLFQATFSQLQDYVPDKG-VDGVVFDLGVSS 115 E+ F + P+ G V GV+ D S Sbjct: 64 AERTGASCVQARLQDFLSIDPTDPEFGQVRGVLLDPSCSG 103 >gi|300855525|ref|YP_003780509.1| putative rRNA methylase [Clostridium ljungdahlii DSM 13528] gi|300435640|gb|ADK15407.1| putative rRNA methylase [Clostridium ljungdahlii DSM 13528] Length = 188 Score = 44.4 bits (104), Expect = 0.024, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 6/84 (7%) Query: 35 APGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETM--RDYKEQFSLFQ 89 G +++DAT G G + ++ V + D A+ +E + + E L Sbjct: 21 NKGDIVVDATMGNGNDTELLAELVGSSGKVYSFDIQETALQNTKEKLMKSNVSEWVKLIH 80 Query: 90 ATFSQLQDYVPDKGVDGVVFDLGV 113 + YV D ++ V+F+LG Sbjct: 81 DGHENMDKYVKD-KINLVIFNLGY 103 >gi|261334706|emb|CBH17700.1| proliferator-activated receptor-interacting protein (PRIP) interacting protein (PIMT), putative,pseudogene [Trypanosoma brucei gambiense DAL972] Length = 251 Score = 44.4 bits (104), Expect = 0.024, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 4/75 (5%) Query: 35 APGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATF 92 LD G GG + ++ VIA+D DP A+ ++ Y + + A + Sbjct: 59 KDKGCCLDLFCGCGGDTVQLAQVFEKVIAVDIDPDAIEAAKKNAEVYGVSTRVTFLCADY 118 Query: 93 SQLQDYVPDKGVDGV 107 L+ + V+ V Sbjct: 119 RTLKP--ENFSVNAV 131 >gi|228475902|ref|ZP_04060612.1| SAM-dependent methyltransferase, MraW methylase family [Staphylococcus hominis SK119] gi|228270057|gb|EEK11527.1| SAM-dependent methyltransferase, MraW methylase family [Staphylococcus hominis SK119] Length = 186 Score = 44.4 bits (104), Expect = 0.024, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 6/85 (7%) Query: 34 PAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91 +++DAT G G + + V D A+ +E + +K +L Sbjct: 18 IQHDSIVIDATCGNGNDTLFLAEQVPNGKVFGFDIQKEAIEHTKEKIASFKH-VTLIHDG 76 Query: 92 FSQLQDYVPDK---GVDGVVFDLGV 113 + + +P VD +F+LG Sbjct: 77 HENILNDIPSDVIGNVDAAIFNLGY 101 >gi|294138832|ref|YP_003554810.1| ribosomal RNA small subunit methyltransferase B [Shewanella violacea DSS12] gi|293325301|dbj|BAJ00032.1| ribosomal RNA small subunit methyltransferase B [Shewanella violacea DSS12] Length = 425 Score = 44.4 bits (104), Expect = 0.024, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 35/85 (41%), Gaps = 1/85 (1%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSLFQ 89 LL P G+++LDA GG + ++ + ++A+D D + Q+ + L Sbjct: 235 LLAPKDGELVLDACAAPGGKTCHLLELANIQLVAVDFDEKRLERVQQNLDRLSLDAKLVH 294 Query: 90 ATFSQLQDYVPDKGVDGVVFDLGVS 114 + + + D ++ D S Sbjct: 295 GDAADIDSWWQGDKFDRILLDAPCS 319 >gi|323351031|ref|ZP_08086688.1| rRNA methylase [Streptococcus sanguinis VMC66] gi|322122755|gb|EFX94464.1| rRNA methylase [Streptococcus sanguinis VMC66] Length = 183 Score = 44.4 bits (104), Expect = 0.025, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 5/77 (6%) Query: 39 VILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQLQ 96 ++DAT G G+ F + V A D AV ++ + + + L A L Sbjct: 21 TVVDATMGN-GHDTLFLAQLARKVYAFDIQEQAVEKTRQRLAEAGLDNAQLILAGHETLD 79 Query: 97 DYVPDKGVDGVVFDLGV 113 Y+ +F+LG Sbjct: 80 QYLDHFK--AAIFNLGY 94 >gi|14521455|ref|NP_126931.1| proliferating-cell nucleolar antigen P120, putative [Pyrococcus abyssi GE5] gi|5458674|emb|CAB50161.1| Sun/NOL1/NOP2 nucleolar protein [Pyrococcus abyssi GE5] Length = 449 Score = 44.4 bits (104), Expect = 0.025, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 33/87 (37%), Gaps = 12/87 (13%) Query: 32 LNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ---- 84 LNP PG+VI+D GG + K + A D D + ++++ + Sbjct: 255 LNPQPGEVIVDLAAAPGGKTTHLAELMKNKGKIYAFDIDKTR----MKRLKEFVNRMGIK 310 Query: 85 -FSLFQATFSQLQDYVPDKGVDGVVFD 110 + + + ++ D V+ D Sbjct: 311 IVKPIIKDGRKAPEILGEEIADRVLLD 337 >gi|154503156|ref|ZP_02040216.1| hypothetical protein RUMGNA_00980 [Ruminococcus gnavus ATCC 29149] gi|153796150|gb|EDN78570.1| hypothetical protein RUMGNA_00980 [Ruminococcus gnavus ATCC 29149] Length = 180 Score = 44.4 bits (104), Expect = 0.025, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 6/85 (7%) Query: 34 PAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMRDYK--EQFSLF 88 G +DAT G G + C+ V A D AV ++ + + E+ + Sbjct: 6 IKEGDCCVDATAGNGNDTEFLCRLTGADGKVYAFDIQKAAVEHTKKRLEEAGLTERAKVI 65 Query: 89 QATFSQLQDYVPDKGVDGVVFDLGV 113 +++YV + V + F+ G Sbjct: 66 LDGHEHMENYVRET-VSAITFNFGY 89 >gi|327474550|gb|EGF19955.1| rRNA methylase [Streptococcus sanguinis SK408] Length = 183 Score = 44.4 bits (104), Expect = 0.025, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 6/92 (6%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82 + +A + ++DAT G G+ + K+ V A D AV ++ + + Sbjct: 7 MAHAFLAEVVTKED-TVVDATMGN-GHDTLFLAKLAKQVYAFDIQEQAVEKTRQRLAEAG 64 Query: 83 -EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 L + L Y +F+LG Sbjct: 65 LNNVQLILSGHETLDQYTDHFK--AAIFNLGY 94 >gi|315641876|ref|ZP_07896868.1| rRNA methylase [Enterococcus italicus DSM 15952] gi|315482444|gb|EFU72984.1| rRNA methylase [Enterococcus italicus DSM 15952] Length = 187 Score = 44.4 bits (104), Expect = 0.026, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 12/85 (14%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETM- 78 L +++ G ++DAT G G+ +F +V A D A+ ++ + Sbjct: 12 LAKEI-----ILSGDCVVDATMGN-GHDTAFLAQLVGPTGHVFAFDVQKPALIATEQRLL 65 Query: 79 -RDYKEQFSLFQATFSQLQDYVPDK 102 D ++ +L Q Y P + Sbjct: 66 AADLLDRTTLIHDGHEQFTQYFPKQ 90 >gi|327470441|gb|EGF15897.1| rRNA methylase [Streptococcus sanguinis SK330] Length = 183 Score = 44.4 bits (104), Expect = 0.027, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 6/92 (6%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82 + +A + +++DAT G G+ + K+ V A D AV ++ + + Sbjct: 7 MAHAFLAEVVTKED-IVVDATMGN-GHDTLFLAKLAKQVYAFDIQEQAVEKTRQRLAEAG 64 Query: 83 -EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + L A L Y +F+LG Sbjct: 65 LDNAQLILAGHETLDQYTDHFK--AAIFNLGY 94 >gi|241758659|ref|ZP_04756773.1| methylase protein [Neisseria flavescens SK114] gi|241321170|gb|EER57366.1| methylase protein [Neisseria flavescens SK114] Length = 189 Score = 44.4 bits (104), Expect = 0.027, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 34/96 (35%), Gaps = 13/96 (13%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMR 79 LL + + G LDAT G G+ V A D A+ Q ++ Sbjct: 13 LLRQAL-----KAGGRALDATAGN-GHDTLLLAQSVGETGRVWAFDVQSKALMQTQGRLK 66 Query: 80 D--YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + + +L L Y+ + +D VF+ G Sbjct: 67 ENGVDGRVALIHGGHENLLSYIDEP-LDAAVFNFGW 101 >gi|159035910|ref|YP_001535163.1| methyltransferase type 11 [Salinispora arenicola CNS-205] gi|157914745|gb|ABV96172.1| Methyltransferase type 11 [Salinispora arenicola CNS-205] Length = 259 Score = 44.4 bits (104), Expect = 0.027, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 4/86 (4%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSL 87 + LL G+ +LD G G Y+ G+ VI LD+ P V ++ + + + Sbjct: 59 CLRLLGEVAGRTVLDVACGPGLYAEELVGRGARVIGLDQSPRMVQLCRQRVPSGEFRVH- 117 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGV 113 + ++PD VD V+F LG+ Sbjct: 118 ---DLADRLHWLPDDSVDLVLFALGL 140 >gi|296313818|ref|ZP_06863759.1| putative rRNA methylase [Neisseria polysaccharea ATCC 43768] gi|296839542|gb|EFH23480.1| putative rRNA methylase [Neisseria polysaccharea ATCC 43768] Length = 188 Score = 44.4 bits (104), Expect = 0.028, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 7/83 (8%) Query: 36 PGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQA 90 G LD T G G+ F V A D P A++ + +++ L Sbjct: 20 EGGNALDGTAGN-GHDTLFLAQTVGIRGKVWAFDVQPQALNNTRCRLQEAGYSNVRLILD 78 Query: 91 TFSQLQDYVPDKGVDGVVFDLGV 113 L+ Y+P+ +D VF+ G Sbjct: 79 GHENLKQYIPEP-LDAAVFNFGW 100 >gi|251781840|ref|YP_002996142.1| SAM-dependent methyltransferase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390469|dbj|BAH80928.1| SAM-dependent methyltransferase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|323126654|gb|ADX23951.1| SAM-dependent methyltransferase [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 184 Score = 44.4 bits (104), Expect = 0.028, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 33/90 (36%), Gaps = 7/90 (7%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-E 83 L +V+ V++DAT G G + + V A D A+ E + Sbjct: 13 LAEVMD-----KSSVVVDATMGNGNDTAFLAQSAKKVYAFDVQEQAIRKTSERLAQLGLS 67 Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 L A + YV + V +F+LG Sbjct: 68 NAELILAGHEAVDQYVTEP-VRAAIFNLGY 96 >gi|325687100|gb|EGD29123.1| rRNA methylase [Streptococcus sanguinis SK72] Length = 183 Score = 44.4 bits (104), Expect = 0.028, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 6/92 (6%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82 + +A + +++DAT G G+ + K+ V A D AV ++ + + Sbjct: 7 MAHAFLAEVVTKED-IVVDATMGN-GHDTLFLAKLAKQVYAFDIQEQAVEKTRQRLAEAG 64 Query: 83 -EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + L A L Y +F+LG Sbjct: 65 LDNAQLILAGHETLDQYTDHFK--AAIFNLGY 94 >gi|256377970|ref|YP_003101630.1| methyltransferase type 12 [Actinosynnema mirum DSM 43827] gi|255922273|gb|ACU37784.1| Methyltransferase type 12 [Actinosynnema mirum DSM 43827] Length = 258 Score = 44.4 bits (104), Expect = 0.029, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 6/104 (5%) Query: 23 VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRD 80 V+ +V+A L PA V+LD G G S + +A+D DP ++ G+ + D Sbjct: 32 VMF-EVLAHLKPAEDLVVLDLACGPGAISGRLLGLLPKARSVAVDVDPVLLAIGEGALGD 90 Query: 81 YKEQFSLFQATFS--QLQDYVPDKGVDG-VVFDLGVSSMQIDCG 121 + +A D + GVDG L +++ Sbjct: 91 VDGRLRWVRADLRDPDWPDALGADGVDGTFDAVLSSTALHWLDP 134 >gi|70726161|ref|YP_253075.1| hypothetical protein SH1160 [Staphylococcus haemolyticus JCSC1435] gi|68446885|dbj|BAE04469.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 186 Score = 44.4 bits (104), Expect = 0.029, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 33/85 (38%), Gaps = 6/85 (7%) Query: 34 PAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91 +++DAT G G + + +V D A+ E ++ + +L Q Sbjct: 18 IKQDSIVIDATCGNGNDTLFLAQQVSNGHVFGFDIQDTAIQSTFEKVKAF-NNVTLIQDG 76 Query: 92 FSQLQDYVP---DKGVDGVVFDLGV 113 ++ ++ +D +F+LG Sbjct: 77 HENIKKHIDIQFKGQIDAAIFNLGY 101 >gi|238763703|ref|ZP_04624662.1| Ribosomal RNA small subunit methyltransferase B [Yersinia kristensenii ATCC 33638] gi|238698005|gb|EEP90763.1| Ribosomal RNA small subunit methyltransferase B [Yersinia kristensenii ATCC 33638] Length = 429 Score = 44.0 bits (103), Expect = 0.029, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85 + LL+P G+ ILD GG + + +V+A+D D +S +E ++ K Sbjct: 238 CVDLLDPQNGEQILDLCAAPGGKTTHILEAAPKAHVLAIDIDEQRLSRVKENLQRLKLHA 297 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + ++ D+ D ++ D S Sbjct: 298 DVRVGDGRIPDEWCGDQQFDRILLDAPCS 326 >gi|145300988|ref|YP_001143829.1| ribosomal RNA small subunit methyltransferase B [Aeromonas salmonicida subsp. salmonicida A449] gi|142853760|gb|ABO92081.1| ribosomal RNA small subunit methyltransferase B [Aeromonas salmonicida subsp. salmonicida A449] Length = 430 Score = 44.0 bits (103), Expect = 0.030, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 3/87 (3%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCGQETMRDYKEQFSL 87 LL+P PG+ +LDA GG + + + +A+D D + QE + Q + Sbjct: 238 LLDPQPGEWVLDACAAPGGKTAHLLERQPALAGVVAVDADENRLKRVQENLDRIGLQARV 297 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGVS 114 S + + P D ++ D S Sbjct: 298 IHGDASTPELWWPQGQFDRILLDAPCS 324 >gi|332969910|gb|EGK08912.1| rRNA methylase [Desmospora sp. 8437] Length = 200 Score = 44.0 bits (103), Expect = 0.030, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 8/87 (9%) Query: 35 APGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQ 89 PG +DAT G G + + V D A+ +E +R+ + +L + Sbjct: 19 NPGSFAVDATVGNGNDTLFLARAVGVSGLVHGFDIQQEALDRTEERLREAGLAGRVTLHR 78 Query: 90 ATFSQLQDYVP---DKGVDGVVFDLGV 113 A Q+ + +P V V+F+LG Sbjct: 79 AGHEQMAETLPPDWRGKVRAVMFNLGY 105 >gi|326803839|ref|YP_004321657.1| putative rRNA methylase [Aerococcus urinae ACS-120-V-Col10a] gi|326650099|gb|AEA00282.1| putative rRNA methylase [Aerococcus urinae ACS-120-V-Col10a] Length = 188 Score = 44.0 bits (103), Expect = 0.030, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 42/115 (36%), Gaps = 21/115 (18%) Query: 6 CKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM----GSNV 61 K + HH I H G LDAT G G+ V Sbjct: 2 LKNVIEVSHHIIKGH-------------LQTGMTALDATIGN-GHDTLLLAQIVGQSGQV 47 Query: 62 IALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYV-PDKGVDGVVFDLGV 113 D A+ Q + + +EQ SL+ + +++ Y+ D +D V+F+LG Sbjct: 48 YGFDLQKQAIRATQALLEKHHCQEQVSLYHDSHAKISQYLKADDYLDLVIFNLGY 102 >gi|149411218|ref|XP_001514237.1| PREDICTED: similar to hepatocellular carcinoma-associated antigen 137 [Ornithorhynchus anatinus] Length = 845 Score = 44.0 bits (103), Expect = 0.031, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 2/68 (2%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96 +++DA G GG + F G VIA+D DP + + + Y ++ L F L Sbjct: 673 IVVDAFCGVGGNAIQFALAGKRVIAIDIDPVKIDLARNNAQVYGVADRLELICGDFLLLA 732 Query: 97 DYVPDKGV 104 + V Sbjct: 733 PNLKADVV 740 >gi|121996838|ref|YP_001001625.1| 23S rRNA 5-methyluridine methyltransferase [Halorhodospira halophila SL1] gi|121588243|gb|ABM60823.1| 23S rRNA m(5)U-1939 methyltransferase [Halorhodospira halophila SL1] Length = 434 Score = 44.0 bits (103), Expect = 0.032, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 38/100 (38%), Gaps = 11/100 (11%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83 ++E+ + L P G+ ILD G G ++ + G+ V ++ DP V +E Sbjct: 277 MVERALEWLQPQSGRRILDLFCGVGNFTLPLAREGATVTGIEGDPRLVERAEENAAANG- 335 Query: 84 QFSLFQATFSQLQDYVPD------KGVDGVVFDLGVSSMQ 117 A F+ + G D V+ D S Q Sbjct: 336 ----LHADFAVADLATEEGTRRVAGGFDAVLLDPPRSGAQ 371 >gi|125625315|ref|YP_001033798.1| hypothetical protein llmg_2562 [Lactococcus lactis subsp. cremoris MG1363] gi|124494123|emb|CAL99124.1| conserved hypothetical protein [Lactococcus lactis subsp. cremoris MG1363] gi|300072129|gb|ADJ61529.1| hypothetical protein LLNZ_13245 [Lactococcus lactis subsp. cremoris NZ9000] Length = 211 Score = 44.0 bits (103), Expect = 0.032, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 31/66 (46%), Gaps = 5/66 (7%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83 +L+ +I + V++DAT G G + ++G+ V A D A+ ++ + + Sbjct: 11 MLKDIINV-----DDVVVDATMGNGYDTLFLAELGAKVYAFDVQEAALEATEKRLENKAI 65 Query: 84 QFSLFQ 89 + + + Sbjct: 66 KTQIVK 71 >gi|157959859|ref|YP_001499893.1| sun protein [Shewanella pealeana ATCC 700345] gi|157844859|gb|ABV85358.1| sun protein [Shewanella pealeana ATCC 700345] Length = 426 Score = 44.0 bits (103), Expect = 0.032, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 35/86 (40%), Gaps = 2/86 (2%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQFSLF 88 LL P +++LDA GG + ++ N ++A+D D + Q+ + + L Sbjct: 235 LLAPQGDELVLDACAAPGGKTCHLLELAPNIKLVAVDFDAKRLERVQQNLDRLSLKAELV 294 Query: 89 QATFSQLQDYVPDKGVDGVVFDLGVS 114 + + + D ++ D S Sbjct: 295 HGDAANIDSWWQGDKFDRILLDAPCS 320 >gi|299143842|ref|ZP_07036922.1| putative rRNA methylase [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518327|gb|EFI42066.1| putative rRNA methylase [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 188 Score = 44.0 bits (103), Expect = 0.032, Method: Composition-based stats. Identities = 28/141 (19%), Positives = 53/141 (37%), Gaps = 17/141 (12%) Query: 37 GKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATF 92 GKV LDAT G G S + A D A++ E ++ E F LF + Sbjct: 23 GKVCLDATCGRGNDSLKLLDKIGIKGFLYACDIQEEAINSTMELLKSKGYENFKLFNKSH 82 Query: 93 SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQAN 152 +++ DY+ + + ++++LG + + + +S +N + Sbjct: 83 TEVFDYIKEP-ISLIIYNLGYL------------PKSDKKVVTEADSTILSIERGLNSIS 129 Query: 153 VKDLTRILGILGEEKQASRIA 173 + ++ LG E A Sbjct: 130 KDGIIIVVSYLGHEGSFEERA 150 >gi|162447371|ref|YP_001620503.1| TrmA family RNA methyltransferase [Acholeplasma laidlawii PG-8A] gi|161985478|gb|ABX81127.1| RNA methyltransferase, TrmA family [Acholeplasma laidlawii PG-8A] Length = 451 Score = 44.0 bits (103), Expect = 0.032, Method: Composition-based stats. Identities = 15/86 (17%), Positives = 41/86 (47%), Gaps = 1/86 (1%) Query: 26 EKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETM-RDYKEQ 84 ++ L P ++++DA G S + ++ A++ + AV + ++ +++ + Sbjct: 297 NEMKRLAQIKPTEIVVDAYAGIAPISHYIGQDAKHIYAIEINEDAVKSAKISLDQNHIDN 356 Query: 85 FSLFQATFSQLQDYVPDKGVDGVVFD 110 ++ + F D + D +D ++FD Sbjct: 357 VTVIENNFEDALDNLKDIKIDVMLFD 382 >gi|152992522|ref|YP_001358243.1| hypothetical protein SUN_0928 [Sulfurovum sp. NBC37-1] gi|151424383|dbj|BAF71886.1| hypothetical protein [Sulfurovum sp. NBC37-1] Length = 439 Score = 44.0 bits (103), Expect = 0.032, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 3/66 (4%) Query: 15 HTIGDH---VPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAV 71 T H V L V+ LL+P PG+ ILDA G G + + G+ VI +D V Sbjct: 198 ETYNKHTAFVSQLALPVVDLLDPKPGEKILDAGCGEGALAEEIVRRGAEVIGVDLSAEMV 257 Query: 72 SCGQET 77 ++ Sbjct: 258 DACRDR 263 >gi|328676686|gb|AEB27556.1| 23S rRNA (uracil-5-) -methyltransferase RumA [Francisella cf. novicida Fx1] Length = 449 Score = 44.0 bits (103), Expect = 0.033, Method: Composition-based stats. Identities = 27/162 (16%), Positives = 54/162 (33%), Gaps = 24/162 (14%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83 ++++ I LL+ + I+D G G ++ + VI ++ +P V +ET D Sbjct: 289 MIQRAIELLDISENDSIIDLFCGLGNFTLPISQHAKTVIGVEGEPTMVKRAKETAADNN- 347 Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGIS 143 + F S + F + K M + Sbjct: 348 ---IVNVNFY---------------AANLFESFEDKEWFNNFEYNK-----MLLDPPRAG 384 Query: 144 ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 A +V N ++ RI+ + + +R A +V + Sbjct: 385 AQEVCNNIEKFNVKRIVYVSCDTATLARDAGILVNTKGYKLI 426 >gi|320094507|ref|ZP_08026280.1| hypothetical protein HMPREF9005_0892 [Actinomyces sp. oral taxon 178 str. F0338] gi|319978570|gb|EFW10140.1| hypothetical protein HMPREF9005_0892 [Actinomyces sp. oral taxon 178 str. F0338] Length = 271 Score = 44.0 bits (103), Expect = 0.033, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 2/66 (3%) Query: 46 GAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ-DYVPDKGV 104 G GG + + +G V+A+DRD A + +R + ++ + ++L + + D+G+ Sbjct: 108 GVGGDALAIAGLGLRVLAVDRDQDASAAAAINLRHFDG-ANVLRGDVAELDMEDLRDQGI 166 Query: 105 DGVVFD 110 D V D Sbjct: 167 DAVFAD 172 >gi|145628159|ref|ZP_01783960.1| conserved hypothetical SAM-dependent methyltransferase [Haemophilus influenzae 22.1-21] gi|144979934|gb|EDJ89593.1| conserved hypothetical SAM-dependent methyltransferase [Haemophilus influenzae 22.1-21] Length = 254 Score = 44.0 bits (103), Expect = 0.034, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 11/96 (11%) Query: 22 PVLLEKVIA------LLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCG 74 P+ L ++I LL GK +LD G GG+ + + + G + VI D + Sbjct: 24 PISLNEIIEKPTMLSLLPDLKGKKLLDLGCGTGGHLQLYLERGAAKVIGTDLSEKMLEQA 83 Query: 75 QETMR---DYKEQFSLFQATFSQLQDYVPDKGVDGV 107 ++ ++ + +FSL+Q +L + +P+ D + Sbjct: 84 EKDLQKCGQFSGRFSLYQLPMEKLAE-LPESDFDII 118 >gi|238021263|ref|ZP_04601689.1| hypothetical protein GCWU000324_01161 [Kingella oralis ATCC 51147] gi|237868243|gb|EEP69249.1| hypothetical protein GCWU000324_01161 [Kingella oralis ATCC 51147] Length = 191 Score = 44.0 bits (103), Expect = 0.034, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 27/80 (33%), Gaps = 7/80 (8%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK--EQFSL 87 G +LD T G G+ V A D A++ + ++ ++ E+ L Sbjct: 18 IHAGDTVLDGTAGN-GHDTLLLAQLVGSAGKVYAFDIQDSALAATADRLQQHQLIERVQL 76 Query: 88 FQATFSQLQDYVPDKGVDGV 107 A L +V + Sbjct: 77 IHAGHQHLARHVKQPIAAAI 96 >gi|312197170|ref|YP_004017231.1| methyltransferase type 12 [Frankia sp. EuI1c] gi|311228506|gb|ADP81361.1| Methyltransferase type 12 [Frankia sp. EuI1c] Length = 276 Score = 44.0 bits (103), Expect = 0.034, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 5/79 (6%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETM----RDYKEQFSLFQ 89 P P ILD G G +R+ ++G V D DP + E + +++ +L Sbjct: 51 PTPPGRILDVGGGEGTQARALARLGYEVTICDPDPEMLRQADERLSGADAAVRDRITLVH 110 Query: 90 ATFSQLQDYVPDKGVDGVV 108 V G DGV+ Sbjct: 111 GDGHDAASLVG-GGWDGVL 128 >gi|218461825|ref|ZP_03501916.1| S-adenosyl-methyltransferase MraW [Rhizobium etli Kim 5] Length = 40 Score = 44.0 bits (103), Expect = 0.034, Method: Composition-based stats. Identities = 16/40 (40%), Positives = 24/40 (60%) Query: 61 VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP 100 +IALDRDP A++ GQ + + + L + FS L D+ P Sbjct: 1 MIALDRDPTAIAAGQAMVAAHGGRLRLVHSQFSHLADHAP 40 >gi|308068128|ref|YP_003869733.1| SAM-dependent methyltransferase [Paenibacillus polymyxa E681] gi|305857407|gb|ADM69195.1| SAM-dependent methyltransferase [Paenibacillus polymyxa E681] Length = 193 Score = 44.0 bits (103), Expect = 0.035, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 37/98 (37%), Gaps = 10/98 (10%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDYKE----QFS 86 PG +DAT G G + K V D A+ C + + + + S Sbjct: 18 VQPGDTAIDATVGTGADTLFLAKAAGKRGRVYGFDIQQEALHCARRRLEENASPSLAEVS 77 Query: 87 LFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCG 121 L + Q+++ VPD V V+F+LG + Sbjct: 78 LQLQSHEQMREAVPDMLHGKVAAVMFNLGYLPSEGADP 115 >gi|238758791|ref|ZP_04619965.1| Ribosomal RNA small subunit methyltransferase B [Yersinia aldovae ATCC 35236] gi|238703088|gb|EEP95631.1| Ribosomal RNA small subunit methyltransferase B [Yersinia aldovae ATCC 35236] Length = 429 Score = 44.0 bits (103), Expect = 0.035, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85 + LL+P G+ ILD GG + + +V+A+D D +S +E ++ Sbjct: 238 CVDLLDPQDGEQILDLCAAPGGKTTHILEAAPKAHVLAIDIDEQRLSRVKENLQRLNLHA 297 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + ++ D+ D ++ D S Sbjct: 298 VVRVGDGRTPDEWCGDQQFDRILLDAPCS 326 >gi|301777476|ref|XP_002924156.1| PREDICTED: trimethylguanosine synthase-like [Ailuropoda melanoleuca] Length = 852 Score = 44.0 bits (103), Expect = 0.035, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 2/68 (2%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96 +++DA G GG + F G VIA+D DP + + Y ++ F L Sbjct: 692 IVVDAFCGVGGNTIQFALTGKRVIAIDIDPVKIDLARNNAEVYGIADKIEFICGDFLLLA 751 Query: 97 DYVPDKGV 104 ++ V Sbjct: 752 SHLKADVV 759 >gi|281337792|gb|EFB13376.1| hypothetical protein PANDA_013430 [Ailuropoda melanoleuca] Length = 852 Score = 44.0 bits (103), Expect = 0.035, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 2/68 (2%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96 +++DA G GG + F G VIA+D DP + + Y ++ F L Sbjct: 692 IVVDAFCGVGGNTIQFALTGKRVIAIDIDPVKIDLARNNAEVYGIADKIEFICGDFLLLA 751 Query: 97 DYVPDKGV 104 ++ V Sbjct: 752 SHLKADVV 759 >gi|163789339|ref|ZP_02183780.1| putative MerR-family transcriptional regulator [Flavobacteriales bacterium ALC-1] gi|159875407|gb|EDP69470.1| putative MerR-family transcriptional regulator [Flavobacteriales bacterium ALC-1] Length = 261 Score = 44.0 bits (103), Expect = 0.036, Method: Composition-based stats. Identities = 30/171 (17%), Positives = 56/171 (32%), Gaps = 18/171 (10%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83 L E+++ LNP + LD G G Y+ K G I +D + + + Sbjct: 22 LTEQLLKHLNPNKNGLYLDIGCGTGNYTSDLQKKGFQFIGIDPSIEMLQKAKAQNEAVEW 81 Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFS-----FQKSGPLDMRMS 138 + S + +P + +DG+V L + R S + +G + + S Sbjct: 82 KIG------SAEKTNLPKESIDGIVGTLTI--HHWSNLTRALSELNYVLKPNGKIVLFTS 133 Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189 +N K L + + + A+ TT+ Sbjct: 134 TPQQMKGYWLNHYFPKMLEDSMK---QMPTFEAVEGAM--SNSDFKITTTE 179 >gi|325496175|gb|EGC94034.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia fergusonii ECD227] Length = 432 Score = 44.0 bits (103), Expect = 0.037, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 3/90 (3%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82 ++ + I L+ P +LD G G ++ + ++V+ ++ P V G+E R+ Sbjct: 274 MVAQAIEWLDIQPQDRVLDLFCGMGNFTLALATRAASVVGVEGVPALVEKGRENARENGL 333 Query: 83 EQFSLFQATFSQ--LQDYVPDKGVDGVVFD 110 + + + G D V+ D Sbjct: 334 ANVTFYHENLEDDVTKQPWAKNGFDKVLLD 363 >gi|302841478|ref|XP_002952284.1| hypothetical protein VOLCADRAFT_62249 [Volvox carteri f. nagariensis] gi|300262549|gb|EFJ46755.1| hypothetical protein VOLCADRAFT_62249 [Volvox carteri f. nagariensis] Length = 272 Score = 44.0 bits (103), Expect = 0.037, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 32/96 (33%), Gaps = 16/96 (16%) Query: 31 LLNPAPGKVILDA--------TFGAGGYSRSFCKMGSNVIALDRDP--FAVSCGQETMRD 80 L P PG ++D T + + K V+A D+DP A ++ Sbjct: 38 ALAPEPGWTVVDCCAAPGNKTT-----HLAAIMKNQGRVLAFDKDPRRLARLKANASLVG 92 Query: 81 YKEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSS 115 A F L P+ V GV+ D S Sbjct: 93 ATSCVEARLADFLSLDPTAPEFKEVRGVLLDPSCSG 128 >gi|332158464|ref|YP_004423743.1| nol1-nop2-sun family nucleolar protein III [Pyrococcus sp. NA2] gi|331033927|gb|AEC51739.1| nol1-nop2-sun family nucleolar protein III [Pyrococcus sp. NA2] Length = 388 Score = 43.6 bits (102), Expect = 0.038, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 11/91 (12%) Query: 32 LNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQFSL 87 L P VI+D T GG + + +IA+D+ + +E ++ + L Sbjct: 196 LEPREDDVIIDMTAAPGGKTTHIAQLLQNRGEIIAIDKSKNRLKKMEENLKRLGVKNVKL 255 Query: 88 FQATFSQLQDYVPDKGVDGVVFD-----LGV 113 Q L D D ++ D LGV Sbjct: 256 IQMDARNLPDL--GIKADKILLDAPCTALGV 284 >gi|218547699|ref|YP_002381490.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia fergusonii ATCC 35469] gi|218355240|emb|CAQ87847.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia fergusonii ATCC 35469] gi|324111189|gb|EGC05172.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia fergusonii B253] Length = 432 Score = 43.6 bits (102), Expect = 0.038, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 3/90 (3%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82 ++ + I L+ P +LD G G ++ + ++V+ ++ P V G+E R+ Sbjct: 274 MVAQAIEWLDIQPQDRVLDLFCGMGNFTLALATRAASVVGVEGVPALVEKGRENARENGL 333 Query: 83 EQFSLFQATFSQ--LQDYVPDKGVDGVVFD 110 + + + G D V+ D Sbjct: 334 ANVTFYHENLEDDVTKQPWAKNGFDKVLLD 363 >gi|254372579|ref|ZP_04988068.1| RNA methyltransferase [Francisella tularensis subsp. novicida GA99-3549] gi|151570306|gb|EDN35960.1| RNA methyltransferase [Francisella novicida GA99-3549] Length = 449 Score = 43.6 bits (102), Expect = 0.038, Method: Composition-based stats. Identities = 27/162 (16%), Positives = 54/162 (33%), Gaps = 24/162 (14%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83 ++++ I LL+ + I+D G G ++ + VI ++ +P V +ET D Sbjct: 289 MIKRAIELLDISENDSIIDLFCGLGNFTLPISQHAKTVIGVEGEPTMVKRAKETAADNN- 347 Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGIS 143 + F S + F + K M + Sbjct: 348 ---IVNVNFY---------------AANLFESFEDKEWFNNFEYNK-----MLLDPPRAG 384 Query: 144 ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 A +V N ++ RI+ + + +R A +V + Sbjct: 385 AQEVCNNIEKFNVKRIVYVSCDTATLARDAGILVNTKGYKLI 426 >gi|148828090|ref|YP_001292843.1| hypothetical protein CGSHiGG_08120 [Haemophilus influenzae PittGG] gi|148719332|gb|ABR00460.1| hypothetical protein CGSHiGG_08120 [Haemophilus influenzae PittGG] Length = 254 Score = 43.6 bits (102), Expect = 0.038, Method: Composition-based stats. Identities = 31/174 (17%), Positives = 65/174 (37%), Gaps = 29/174 (16%) Query: 22 PVLLEKVIA---LLNPAP---GKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCG 74 P+ L ++I +L+ P GK +LD G GG+ + + + + VI D + Sbjct: 24 PISLNEIIEKPTMLSLLPNLKGKKLLDLGCGTGGHLQLYLEREAAKVIGTDLSEKMLEQA 83 Query: 75 QETMR---DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131 ++ ++ + +FSL+ +L + +P+ D + SS F+F Sbjct: 84 EKDLQKCGQFSARFSLYHLPMEKLAE-LPESHFDVI-----TSS---------FAFHYIE 128 Query: 132 PLDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183 +S +S++ + + +T E+ V R + Sbjct: 129 NFPTLLSTIHDKLSSNGTLIFSQEHPITTCHKE--GERWEKNDKKQQVAYRLNH 180 >gi|24371630|ref|NP_715672.1| sun protein [Shewanella oneidensis MR-1] gi|46396921|sp|Q8EKR0|RSMB_SHEON RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|24345386|gb|AAN53117.1|AE015454_11 sun protein [Shewanella oneidensis MR-1] Length = 428 Score = 43.6 bits (102), Expect = 0.038, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 2/86 (2%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88 LL P ++ILDA GG S ++ +IA+D D + Q+ + + + Sbjct: 235 LLAPQANELILDACAAPGGKSCHLLELEPSIKLIAVDFDAKRLERVQQNLDRLSLKAEVI 294 Query: 89 QATFSQLQDYVPDKGVDGVVFDLGVS 114 + + + + D ++ D S Sbjct: 295 HGDAANIDSWWQGEQFDRILLDAPCS 320 >gi|289192404|ref|YP_003458345.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit [Methanocaldococcus sp. FS406-22] gi|288938854|gb|ADC69609.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit [Methanocaldococcus sp. FS406-22] Length = 186 Score = 43.6 bits (102), Expect = 0.038, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 38/101 (37%), Gaps = 5/101 (4%) Query: 5 SCKTMSSAIHHTIGDHVPVLLEKV----IALLNPAPGKVILDATFGAGGYSRSFCKMGSN 60 K M + VP+ E++ I LN V++D G+GG + + Sbjct: 3 KVKYMIPDEEFIRREGVPITKEEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIARRCKF 62 Query: 61 VIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQLQDYVP 100 V A+D A+ ++ + + + + + + D + Sbjct: 63 VYAIDYLEDAIEVTKQNLAKFNIKNCQIIKGRAEDILDKLE 103 >gi|120404221|ref|YP_954050.1| type 11 methyltransferase [Mycobacterium vanbaalenii PYR-1] gi|119957039|gb|ABM14044.1| Methyltransferase type 11 [Mycobacterium vanbaalenii PYR-1] Length = 208 Score = 43.6 bits (102), Expect = 0.039, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 8/97 (8%) Query: 21 VPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETM 78 VPVLL L P G + + G G S+ + + A+D DP + + + Sbjct: 23 VPVLLR-FGGRLPPGSGALEIGCGSGYG--SQLVLQRFGAARIDAVDLDPAMIERARTRL 79 Query: 79 RDYKEQFSLFQATFSQLQDYV--PDKGVDGVVFDLGV 113 Y ++ L + + L++ + D D V FD G+ Sbjct: 80 APYGDRVHLATGSATDLREALNADDGSYDAV-FDFGI 115 >gi|321456618|gb|EFX67720.1| hypothetical protein DAPPUDRAFT_63741 [Daphnia pulex] Length = 221 Score = 43.6 bits (102), Expect = 0.039, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 2/68 (2%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96 +I+DA GAGG S F VIA+D DP + + Y ++ F QL Sbjct: 67 LIVDAFCGAGGNSIQFAFKCERVIAIDIDPSKIELARHNASVYGVADRIEFIVGDFFQLA 126 Query: 97 DYVPDKGV 104 + V Sbjct: 127 PSLKADVV 134 >gi|296875985|ref|ZP_06900044.1| rRNA methylase [Streptococcus parasanguinis ATCC 15912] gi|296433060|gb|EFH18848.1| rRNA methylase [Streptococcus parasanguinis ATCC 15912] Length = 185 Score = 43.6 bits (102), Expect = 0.039, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 10/91 (10%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSNVIALDRDPFAVSCGQETMRDYK- 82 L +VI V++DAT G G+ +F K+ V A D A+ QE + Sbjct: 12 LAEVI----TKED-VVVDATMGN-GHDTAFLAKLAGQVYAFDIQEQALVNTQERLEKLGL 65 Query: 83 EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + L + YV +F+LG Sbjct: 66 QHVQLILDGHQHVDQYVETLK--AAIFNLGY 94 >gi|157151080|ref|YP_001450937.1| methyltransferase [Streptococcus gordonii str. Challis substr. CH1] gi|157075874|gb|ABV10557.1| methyltransferase [Streptococcus gordonii str. Challis substr. CH1] Length = 184 Score = 43.6 bits (102), Expect = 0.039, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 6/92 (6%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82 + +A + +++DAT G G+ + K+ V A D AV ++ + + Sbjct: 7 MAHAFLAEVVTKED-IVVDATMGN-GHDTLFLAKLAKQVYAFDIQEQAVEKTRQRLAEAG 64 Query: 83 -EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + L A L Y +F+LG Sbjct: 65 LDNAQLILAGHETLDQYTDHFK--AAIFNLGY 94 >gi|317130009|ref|YP_004096291.1| rRNA methylase [Bacillus cellulosilyticus DSM 2522] gi|315474957|gb|ADU31560.1| rRNA methylase [Bacillus cellulosilyticus DSM 2522] Length = 192 Score = 43.6 bits (102), Expect = 0.040, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 8/89 (8%) Query: 33 NPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRD--YKEQFSL 87 G V++DAT G G + K+ V + D A++ ++ + + L Sbjct: 18 AVTEGDVVIDATAGKGNDTLFLSKLVSNTGKVYSFDIQEAAITATRKKLAENNQDSNVQL 77 Query: 88 FQATFSQLQDYVPDK---GVDGVVFDLGV 113 +L +Y+ + G +F+LG Sbjct: 78 IHDGHEKLLNYLDQDDYENIAGAIFNLGY 106 >gi|327462037|gb|EGF08366.1| rRNA methylase [Streptococcus sanguinis SK1057] Length = 183 Score = 43.6 bits (102), Expect = 0.040, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 35/92 (38%), Gaps = 6/92 (6%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82 + +A + V++DAT G G+ + K+ V A D AV ++ + + Sbjct: 7 MAHAFLAEVVTKED-VVVDATMGN-GHDTLFLAKLAKQVYAFDIQEQAVEKTRQRLAEAG 64 Query: 83 -EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + L A L Y +F+LG Sbjct: 65 LDNAQLILAGHETLDQY--TNHFKAAIFNLGY 94 >gi|126668178|ref|ZP_01739139.1| Fmu, rRNA SAM-dependent methyltransferase [Marinobacter sp. ELB17] gi|126627327|gb|EAZ97963.1| Fmu, rRNA SAM-dependent methyltransferase [Marinobacter sp. ELB17] Length = 432 Score = 43.6 bits (102), Expect = 0.041, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 3/90 (3%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMRDYKEQ 84 LL+ APG+ ILDA GG + + + + V+A+D + QE + Sbjct: 234 CTTLLDLAPGQRILDACAAPGGKTCAILESCPQAAEVVAIDESAQRLPRVQENLDRLDLH 293 Query: 85 FSLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 SL QA + + + + D ++ DL S Sbjct: 294 ASLLQADAADIDQWWDGQPFDRILLDLPCS 323 >gi|126650083|ref|ZP_01722316.1| hypothetical protein BB14905_02395 [Bacillus sp. B14905] gi|126593255|gb|EAZ87217.1| hypothetical protein BB14905_02395 [Bacillus sp. B14905] Length = 246 Score = 43.6 bits (102), Expect = 0.041, Method: Composition-based stats. Identities = 31/100 (31%), Positives = 41/100 (41%), Gaps = 4/100 (4%) Query: 11 SAIHHTIGD-HVPVLLEKVI-ALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDP 68 +A +H GD H VLL I +LL GK +LDA G G SR K G+ V A+D Sbjct: 18 TANYHEYGDIHREVLLNPTIFSLLGEVDGKHLLDAGCGEGYLSRLLVKQGAIVTAVDFSQ 77 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVV 108 + E F L ++ D D +V Sbjct: 78 KMLDIAMERTPQQLP-VQFFHGNCENL-TFLADNQFDCIV 115 >gi|242040693|ref|XP_002467741.1| hypothetical protein SORBIDRAFT_01g033250 [Sorghum bicolor] gi|241921595|gb|EER94739.1| hypothetical protein SORBIDRAFT_01g033250 [Sorghum bicolor] Length = 690 Score = 43.6 bits (102), Expect = 0.041, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 2/65 (3%) Query: 38 KVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQL 95 VI+D G GG + F +VIA+D DP + C Y + F + Sbjct: 531 GVIIDCFTGVGGNAIQFATKCKHVIAVDIDPQKIDCAHHNASIYGVNDHIDFIVGDFIHI 590 Query: 96 QDYVP 100 ++ Sbjct: 591 APHLK 595 >gi|75763382|ref|ZP_00743117.1| SAM-dependent methyltransferase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218899906|ref|YP_002448317.1| hypothetical protein BCG9842_B0375 [Bacillus cereus G9842] gi|74489132|gb|EAO52613.1| SAM-dependent methyltransferase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218545685|gb|ACK98079.1| conserved hypothetical protein [Bacillus cereus G9842] Length = 190 Score = 43.6 bits (102), Expect = 0.041, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 10/90 (11%) Query: 33 NPAPGKVILDATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFS 86 G +DAT G G+ V D A+ +++ + E+ Sbjct: 17 AVKEGDYAVDATLGN-GHDTCFLAEIVGDSGKVFGFDIQKEAIESSTTHLKEKELFERTV 75 Query: 87 LFQATFSQLQDYVPDK---GVDGVVFDLGV 113 L + L +P+ V G +F+LG Sbjct: 76 LVHDSHDTLLSVLPEDAKGKVTGAIFNLGY 105 >gi|332362266|gb|EGJ40066.1| rRNA methylase [Streptococcus sanguinis SK1056] Length = 183 Score = 43.6 bits (102), Expect = 0.041, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 6/92 (6%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82 + +A + V++DAT G G+ + ++ V A D AV ++ + + Sbjct: 7 MAHAFLAEVVTKED-VVVDATMGN-GHDTLFLAQLAKQVYAFDIQEQAVEKTRQRLTEAG 64 Query: 83 -EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + L A L Y +F+LG Sbjct: 65 LDNVQLILAGHETLDQYTEHFK--AAIFNLGY 94 >gi|125718569|ref|YP_001035702.1| hypothetical protein SSA_1769 [Streptococcus sanguinis SK36] gi|125498486|gb|ABN45152.1| Conserved hypothetical protein [Streptococcus sanguinis SK36] Length = 183 Score = 43.6 bits (102), Expect = 0.041, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 35/92 (38%), Gaps = 6/92 (6%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82 + +A + +++DAT G G+ + ++ V A D AV ++ + + Sbjct: 7 MAHAFLAEVVTKED-IVVDATMGN-GHDTLFLAQLAKQVYAFDIQEQAVEKTRQRLAEAG 64 Query: 83 -EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + L A L Y +F+LG Sbjct: 65 LDNAQLILAGHETLDQYTDHFK--AAIFNLGY 94 >gi|320104694|ref|YP_004180285.1| type 11 methyltransferase [Isosphaera pallida ATCC 43644] gi|319751976|gb|ADV63736.1| Methyltransferase type 11 [Isosphaera pallida ATCC 43644] Length = 316 Score = 43.6 bits (102), Expect = 0.043, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 6/88 (6%) Query: 26 EKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK 82 ++++A L PG V+ D GAG ++ ++ VIA D P + + +R Sbjct: 120 DEMLAALKIKPGMVVADVGAGAGFHTLRLARLVGPTGTVIATDVQPQMIQLLRNNVRQA- 178 Query: 83 EQFSLFQATFSQLQDY-VPDKGVDGVVF 109 + + + D +P VD V+ Sbjct: 179 -RLTNVKPVVCTHDDAKLPKGAVDLVLM 205 >gi|328946868|gb|EGG41005.1| rRNA methylase [Streptococcus sanguinis SK1087] Length = 183 Score = 43.6 bits (102), Expect = 0.043, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 34/92 (36%), Gaps = 6/92 (6%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82 + +A + +++DAT G G+ + K+ V A D AV ++ + Sbjct: 7 MAHAFLAEVVTKED-IVVDATMGN-GHDTLFLAKLAKQVYAFDIQEQAVEKTRQRLAKAG 64 Query: 83 -EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + L A L Y +F+LG Sbjct: 65 LDNAQLILAGHETLDQYTDHFK--AAIFNLGY 94 >gi|293393280|ref|ZP_06637594.1| RNA methyltransferase Sun [Serratia odorifera DSM 4582] gi|291424190|gb|EFE97405.1| RNA methyltransferase Sun [Serratia odorifera DSM 4582] Length = 429 Score = 43.6 bits (102), Expect = 0.043, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85 + LL+P G+ ILD GG + + +V+A+D D +S E ++ + Sbjct: 238 CVDLLDPQDGEQILDLCAAPGGKTTHILEAAPKAHVMAVDIDEQRLSRVNENLQRLRFSA 297 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + Q Q + DK D ++ D S Sbjct: 298 EVKQGDGRTPQQWCGDKQFDRILLDAPCS 326 >gi|332359111|gb|EGJ36932.1| rRNA methylase [Streptococcus sanguinis SK49] Length = 183 Score = 43.6 bits (102), Expect = 0.043, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 35/92 (38%), Gaps = 6/92 (6%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82 + +A + +++DAT G G+ + K+ V A D AV ++ + + Sbjct: 7 MAHAFLAEVVTKED-IVVDATMGN-GHDTLFLAKLAKQVYAFDIQEQAVEKTRQRLAEAD 64 Query: 83 -EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + L A + Y +F+LG Sbjct: 65 LDNAQLILAGHETMDQYTDHFK--AAIFNLGY 94 >gi|163753506|ref|ZP_02160630.1| putative MerR-family transcriptional regulator [Kordia algicida OT-1] gi|161327238|gb|EDP98563.1| putative MerR-family transcriptional regulator [Kordia algicida OT-1] Length = 262 Score = 43.6 bits (102), Expect = 0.044, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 53/148 (35%), Gaps = 13/148 (8%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84 LE++ LNP + LD G G Y+ + I +D ++ Q+ Sbjct: 23 LERIQYHLNPIHEGIYLDIGCGTGNYTSKLHNKETKFIGIDPSQKMLNIAQKN----HPT 78 Query: 85 FSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFS--FQKSGP-LDMRMSCSG 141 + + + ++GVV L + D ++GFS F+ P ++ + Sbjct: 79 IDWKLGAAENIP--LKNNSIEGVVGTL--TLHHWDNLEKGFSELFRVMKPYANIVFFTAT 134 Query: 142 ISASD--VVNQANVKDLTRILGILGEEK 167 + + +N K L + + K Sbjct: 135 PTQMEGYWLNHYFPKMLADSIAQMPSLK 162 >gi|311693681|gb|ADP96554.1| 23S rRNA 5-methyluridine methyltransferase [marine bacterium HP15] Length = 436 Score = 43.6 bits (102), Expect = 0.044, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 36/92 (39%), Gaps = 7/92 (7%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82 ++ + + L+ PG+ +LD G G ++ G V+ ++ D V G+E Sbjct: 276 MVHRAVEWLDVQPGERVLDLFCGLGNFTLPLATRGGQVVGVEGDETMVVRGRENAELNGL 335 Query: 83 EQFSLF----QATFSQLQDYVPDKGVDGVVFD 110 + + F+ +G D ++ D Sbjct: 336 DNVAFHGADLHGDFT--GQSWAKEGFDKILID 365 >gi|302530477|ref|ZP_07282819.1| methyltransferase type 11 [Streptomyces sp. AA4] gi|302439372|gb|EFL11188.1| methyltransferase type 11 [Streptomyces sp. AA4] Length = 237 Score = 43.6 bits (102), Expect = 0.044, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 4/84 (4%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSL 87 + LL G+ +LDA G G Y+ G+ V D P V +E + + + + Sbjct: 36 CLELLGDVAGQHVLDAACGPGLYAEELTARGARVTGFDLSPRMVELSRERVPEGEFRVQ- 94 Query: 88 FQATFSQLQDYVPDKGVDGVVFDL 111 ++ ++PD VD V+F L Sbjct: 95 ---DLAEPLTWLPDASVDQVLFAL 115 >gi|295982627|pdb|3MTI|A Chain A, The Crystal Structure Of A Rrna Methylase From Streptococcus Thermophilus To 1.95a gi|295982628|pdb|3MTI|B Chain B, The Crystal Structure Of A Rrna Methylase From Streptococcus Thermophilus To 1.95a Length = 185 Score = 43.6 bits (102), Expect = 0.044, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 7/90 (7%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-E 83 L +V+ +++DAT G G + + V A D A+ + + D E Sbjct: 16 LAEVLD-----DESIVVDATXGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLGIE 70 Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 L L YV + + +F+LG Sbjct: 71 NTELILDGHENLDHYVREP-IRAAIFNLGY 99 >gi|283835447|ref|ZP_06355188.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Citrobacter youngae ATCC 29220] gi|291068628|gb|EFE06737.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Citrobacter youngae ATCC 29220] Length = 432 Score = 43.6 bits (102), Expect = 0.045, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 37/90 (41%), Gaps = 3/90 (3%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET-MRDYK 82 ++ + + L+ PG +LD G G ++ + ++V+ ++ P V +E + + Sbjct: 274 MVARALEWLDVQPGDRVLDLFCGMGNFTLPLARRAASVVGVEGVPALVEKARENALNNGL 333 Query: 83 EQFSLFQATFSQ--LQDYVPDKGVDGVVFD 110 + F + + G D V+ D Sbjct: 334 HNVTFFHENLEEDVTRQPWAKNGFDKVLLD 363 >gi|225011697|ref|ZP_03702135.1| Fmu (Sun) domain protein [Flavobacteria bacterium MS024-2A] gi|225004200|gb|EEG42172.1| Fmu (Sun) domain protein [Flavobacteria bacterium MS024-2A] Length = 403 Score = 43.6 bits (102), Expect = 0.045, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 7/91 (7%) Query: 30 ALLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFS 86 +NP PG I+DA GAGG + + + N+IA+D P + + ++ + + Sbjct: 218 HWVNPKPGMKIIDACAGAGGKTLHMAALMENKGNIIAIDNYPKKLEQLIKR--AHRNRIN 275 Query: 87 LFQATFSQLQDYVPDK--GVDGVVFDLGVSS 115 + Q + D V+ D S Sbjct: 276 IIQTNDASEITVFESNLEKADVVLIDAPCSG 306 >gi|332709849|ref|ZP_08429806.1| methylase involved in ubiquinone/menaquinone biosynthesis [Lyngbya majuscula 3L] gi|332351447|gb|EGJ31030.1| methylase involved in ubiquinone/menaquinone biosynthesis [Lyngbya majuscula 3L] Length = 297 Score = 43.6 bits (102), Expect = 0.045, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 31/59 (52%), Gaps = 2/59 (3%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83 +++++ PG ++LDA G G ++R ++ S V+ +D D ++ +E +D Sbjct: 42 VKEILGF--VRPGDMVLDAGCGTGQHARYLAEVASKVVGIDTDSARIAIAKEHCQDLDN 98 >gi|309800616|ref|ZP_07694760.1| rRNA methylase [Streptococcus infantis SK1302] gi|308115762|gb|EFO53294.1| rRNA methylase [Streptococcus infantis SK1302] Length = 185 Score = 43.6 bits (102), Expect = 0.045, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 33/88 (37%), Gaps = 7/88 (7%) Query: 30 ALLN--PAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQF 85 L +++DAT G G+ + K+ V A D A+ + +++ Sbjct: 10 DFLAQVITQEDIVVDATMGN-GHDTLFLAKLAKQVYAFDIQEQALEKTSQRLQEADLTNV 68 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGV 113 L + +V + V +F+LG Sbjct: 69 ELILQGHETVDQFVRE--VKAAIFNLGY 94 >gi|228999537|ref|ZP_04159115.1| hypothetical protein bmyco0003_40920 [Bacillus mycoides Rock3-17] gi|229007095|ref|ZP_04164721.1| hypothetical protein bmyco0002_39940 [Bacillus mycoides Rock1-4] gi|228754140|gb|EEM03559.1| hypothetical protein bmyco0002_39940 [Bacillus mycoides Rock1-4] gi|228760248|gb|EEM09216.1| hypothetical protein bmyco0003_40920 [Bacillus mycoides Rock3-17] Length = 177 Score = 43.6 bits (102), Expect = 0.045, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 10/90 (11%) Query: 33 NPAPGKVILDATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFS 86 G +DAT G G+ V D A+ +++ E+ Sbjct: 4 AVKEGDYAVDATLGN-GHDTCFLAEIVGEHGKVFGFDIQRKAIESSATHLKERGLEERTV 62 Query: 87 LFQATFSQLQDYVPDK---GVDGVVFDLGV 113 L + L +P++ V G +F+LG Sbjct: 63 LVHDSHDTLLSVLPEEAKGKVTGAIFNLGY 92 >gi|225077173|ref|ZP_03720372.1| hypothetical protein NEIFLAOT_02228 [Neisseria flavescens NRL30031/H210] gi|224951521|gb|EEG32730.1| hypothetical protein NEIFLAOT_02228 [Neisseria flavescens NRL30031/H210] Length = 189 Score = 43.6 bits (102), Expect = 0.045, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 34/96 (35%), Gaps = 13/96 (13%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMR 79 LL + + G LDAT G G+ V A D A+ Q ++ Sbjct: 13 LLRQAL-----KAGGRALDATAGN-GHDTLLLAQSVGETGRVWAFDVQSKALMQTQGRLK 66 Query: 80 D--YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + + +L L Y+ + +D VF+ G Sbjct: 67 ENGVDGRVALIHDGHENLSSYIDEP-LDAAVFNFGW 101 >gi|269929208|ref|YP_003321529.1| methyltransferase type 11 [Sphaerobacter thermophilus DSM 20745] gi|269788565|gb|ACZ40707.1| Methyltransferase type 11 [Sphaerobacter thermophilus DSM 20745] Length = 250 Score = 43.6 bits (102), Expect = 0.046, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 8/83 (9%) Query: 11 SAIHHTIGDHVPVLLEKVIALLNPAPGKVI--LDATFGAGGYSRSFCKMGS--NVIALDR 66 AI + +HV +L +L+ P + +D GAGG S + + V+ALD Sbjct: 27 DAITPSRAEHVALL----TSLIPVRPDEPFLAVDLACGAGGLSAAILERFPASQVVALDG 82 Query: 67 DPFAVSCGQETMRDYKEQFSLFQ 89 + + + Y + L Sbjct: 83 SHRMLDEARRRLAPYAGRVDLRH 105 >gi|228993501|ref|ZP_04153410.1| hypothetical protein bpmyx0001_42280 [Bacillus pseudomycoides DSM 12442] gi|228766216|gb|EEM14861.1| hypothetical protein bpmyx0001_42280 [Bacillus pseudomycoides DSM 12442] Length = 177 Score = 43.6 bits (102), Expect = 0.046, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 10/90 (11%) Query: 33 NPAPGKVILDATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFS 86 G +DAT G G+ V D A+ +++ E+ Sbjct: 4 AVKEGDYAVDATLGN-GHDTCFLAEIVGEHGKVFGFDIQRKAIESSATHLKERGLEERTV 62 Query: 87 LFQATFSQLQDYVPDK---GVDGVVFDLGV 113 L + L +P++ V G +F+LG Sbjct: 63 LVHDSHDTLLSVLPEEAKGKVTGAIFNLGY 92 >gi|255065187|ref|ZP_05317042.1| putative rRNA methylase [Neisseria sicca ATCC 29256] gi|255050608|gb|EET46072.1| putative rRNA methylase [Neisseria sicca ATCC 29256] Length = 189 Score = 43.6 bits (102), Expect = 0.047, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 11/95 (11%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMRD 80 LL++ + P LD T G G + + G V A D A++ + + + Sbjct: 13 LLKQAL-----KPDARALDGTAGNGNDTLMLARSVGRGGKVWAFDIQEQALANTRMRLEE 67 Query: 81 YK--EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 ++ L L ++ + +D VF+ G Sbjct: 68 AGMADRVELILDGHENLATHIREP-LDAAVFNFGW 101 >gi|262283226|ref|ZP_06060993.1| methyltransferase [Streptococcus sp. 2_1_36FAA] gi|262261478|gb|EEY80177.1| methyltransferase [Streptococcus sp. 2_1_36FAA] Length = 184 Score = 43.6 bits (102), Expect = 0.047, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 35/92 (38%), Gaps = 6/92 (6%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82 + +A + +++DAT G G+ + ++ V A D AV ++ + + Sbjct: 7 MAHAFLAEVVTKED-IVVDATMGN-GHDTLFLAQLAKQVYAFDIQEQAVEKTRQRLAEAG 64 Query: 83 -EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + L A L Y +F+LG Sbjct: 65 LDNAQLILAGHETLDQYTDHFK--AAIFNLGY 94 >gi|268316279|ref|YP_003289998.1| Methyltransferase type 11 [Rhodothermus marinus DSM 4252] gi|262333813|gb|ACY47610.1| Methyltransferase type 11 [Rhodothermus marinus DSM 4252] Length = 246 Score = 43.6 bits (102), Expect = 0.048, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 10/89 (11%) Query: 26 EKVIALLN----PAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81 E+V+ L+ PAPG ILD G G ++R + G V +D A+ +E Sbjct: 26 EQVVDLIERLVRPAPGSEILDVGCGRGRHARVLARRGYRVTGIDVAERALQIARERAEAE 85 Query: 82 KEQFSLFQATF--SQLQDYVPDKGVDGVV 108 L F +++ + + DGVV Sbjct: 86 G----LHHVRFLRHDMREPLCRECFDGVV 110 >gi|322372189|ref|ZP_08046730.1| hypothetical protein ZOD2009_21857 [Haladaptatus paucihalophilus DX253] gi|320548198|gb|EFW89871.1| hypothetical protein ZOD2009_21857 [Haladaptatus paucihalophilus DX253] Length = 237 Score = 43.2 bits (101), Expect = 0.049, Method: Composition-based stats. Identities = 41/189 (21%), Positives = 68/189 (35%), Gaps = 36/189 (19%) Query: 37 GKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ 96 GK ILDA G G Y+ G++V+A+D V +E + ++ ++ QA + Sbjct: 46 GKRILDAGCGCGRYTEWLLDNGADVVAVDTSENMVEQTRERV---GDRATVHQADLERPL 102 Query: 97 DYVPDKGVDGVVFDLGVSSMQIDCG-------DR-----GF-SFQKSGPLDMRMSCSGIS 143 D D DG+V G+S ++ R GF +F PLD + Sbjct: 103 DIADDGTFDGIV--SGLSLHYVEDWRQPFTEFSRLLRPGGFLAFSAHHPLDDYL------ 154 Query: 144 ASDVVNQANVKDLTRILGILG----EEKQASRIAHAIVKRRQSAPF-QTTQDLSSLIQKT 198 A DV + R+ + R I+ P +T L L++ Sbjct: 155 AYDV--NYFETERERMTWTASGTDIDVPFYHRPFSEII-----NPLVETGFQLDELVEPI 207 Query: 199 VYFSKNNRI 207 + + Sbjct: 208 PTATFEEKK 216 >gi|269125397|ref|YP_003298767.1| type 11 methyltransferase [Thermomonospora curvata DSM 43183] gi|268310355|gb|ACY96729.1| Methyltransferase type 11 [Thermomonospora curvata DSM 43183] Length = 337 Score = 43.2 bits (101), Expect = 0.049, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 26/49 (53%) Query: 29 IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77 + LL+P P + I+D G G +S + + G+ V+ +D P ++ T Sbjct: 23 VDLLDPQPDERIIDLGCGTGVFSAAIAERGAQVLGIDGSPEMIAQAAAT 71 >gi|157372746|ref|YP_001480735.1| 16S rRNA methyltransferase B [Serratia proteamaculans 568] gi|224493268|sp|A8GKG7|RSMB_SERP5 RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|157324510|gb|ABV43607.1| sun protein [Serratia proteamaculans 568] Length = 429 Score = 43.2 bits (101), Expect = 0.049, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85 + LL+P G+ ILD GG + + +V+A+D D + +E ++ + Sbjct: 238 CVDLLDPQDGEQILDLCAAPGGKTTHILEAAPKAHVMAVDIDEQRLKRVKENLQRLRLHA 297 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + Q Q + DK D ++ D S Sbjct: 298 EVKQGDGRTPQQWCGDKQFDRILLDAPCS 326 >gi|163854093|ref|YP_001642136.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Methylobacterium extorquens PA1] gi|218533038|ref|YP_002423854.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Methylobacterium chloromethanicum CM4] gi|163665698|gb|ABY33065.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Methylobacterium extorquens PA1] gi|218525341|gb|ACK85926.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Methylobacterium chloromethanicum CM4] Length = 216 Score = 43.2 bits (101), Expect = 0.050, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 7/71 (9%) Query: 22 PVLLEKVIALLNPAPGKVILDATFGAG-GYSRSFCK-MGSNVIALDRDPFAVSCGQETMR 79 P+LL ++I L PG LD G G GY + + +G+ V+AL+ DP + +E + Sbjct: 68 PMLLARLIQALKIRPGTRALD--VGTGYGYGAAMLRQLGAEVVALESDPDLIGAARERL- 124 Query: 80 DYKEQFSLFQA 90 + +L Q Sbjct: 125 --GDTVNLVQG 133 >gi|149374703|ref|ZP_01892477.1| RNA methyltransferase, TrmA family protein [Marinobacter algicola DG893] gi|149361406|gb|EDM49856.1| RNA methyltransferase, TrmA family protein [Marinobacter algicola DG893] Length = 429 Score = 43.2 bits (101), Expect = 0.050, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 38/99 (38%), Gaps = 7/99 (7%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82 ++ + + L+ PG+ +LD G G ++ + V+ ++ D V G+E Sbjct: 269 MVHRAVEWLDIQPGERVLDLFCGLGNFTLPLARRAGQVVGVEGDDAMVVRGRENAELNGL 328 Query: 83 EQFSLF----QATFSQLQDYVPDKGVDGVVFDLGVSSMQ 117 + A F+ +G D ++ D S Q Sbjct: 329 SNVAFHGADLHADFT--AQPWAAEGFDKILIDPPRSGAQ 365 >gi|282917021|ref|ZP_06324779.1| mraW; SAM-dependent methyltransferase [Staphylococcus aureus subsp. aureus D139] gi|283770839|ref|ZP_06343731.1| mraW SAM-dependent methyltransferase [Staphylococcus aureus subsp. aureus H19] gi|282319508|gb|EFB49860.1| mraW; SAM-dependent methyltransferase [Staphylococcus aureus subsp. aureus D139] gi|283460986|gb|EFC08076.1| mraW SAM-dependent methyltransferase [Staphylococcus aureus subsp. aureus H19] Length = 187 Score = 43.2 bits (101), Expect = 0.051, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 37/85 (43%), Gaps = 6/85 (7%) Query: 34 PAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91 P +++DAT G G + + +V D A+ ++ ++D+ SL + Sbjct: 18 ITPESIVVDATCGNGNDTLFLAEQVPEGHVYGFDIQDLALENTRDKVKDF-NHVSLIKDG 76 Query: 92 FSQLQDYVPD---KGVDGVVFDLGV 113 ++ ++ D +D +F+LG Sbjct: 77 HENIEHHINDAHKGHIDAAIFNLGY 101 >gi|312863858|ref|ZP_07724096.1| putative rRNA methylase [Streptococcus vestibularis F0396] gi|311101394|gb|EFQ59599.1| putative rRNA methylase [Streptococcus vestibularis F0396] Length = 182 Score = 43.2 bits (101), Expect = 0.051, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 7/90 (7%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-E 83 L +V+ V +DAT G G + + V A D A+ ++ + D + E Sbjct: 13 LAEVLD-----DESVAVDATMGNGNDTAFLAGLAKKVYAFDVQEQALEKTRQRLSDLEIE 67 Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 L L YV + + +F+LG Sbjct: 68 NAQLILDGHENLDRYVTEP-IRAAIFNLGY 96 >gi|49484008|ref|YP_041232.1| hypothetical protein SAR1846 [Staphylococcus aureus subsp. aureus MRSA252] gi|257425874|ref|ZP_05602298.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257428541|ref|ZP_05604939.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257431175|ref|ZP_05607552.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257433856|ref|ZP_05610214.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] gi|257436773|ref|ZP_05612817.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M876] gi|282904336|ref|ZP_06312224.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus C160] gi|282906161|ref|ZP_06314016.1| mraW; SAM-dependent methyltransferase [Staphylococcus aureus subsp. aureus Btn1260] gi|282909078|ref|ZP_06316896.1| SAM-dependent methyltransferase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282914555|ref|ZP_06322341.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus M899] gi|282919523|ref|ZP_06327258.1| mraW; SAM-dependent methyltransferase [Staphylococcus aureus subsp. aureus C427] gi|282924901|ref|ZP_06332567.1| mraW; SAM-dependent methyltransferase [Staphylococcus aureus subsp. aureus C101] gi|283958514|ref|ZP_06375965.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus A017934/97] gi|293503633|ref|ZP_06667480.1| mraW; SAM-dependent methyltransferase [Staphylococcus aureus subsp. aureus 58-424] gi|293510649|ref|ZP_06669354.1| SAM-dependent methyltransferase [Staphylococcus aureus subsp. aureus M809] gi|293537190|ref|ZP_06671870.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus M1015] gi|295428337|ref|ZP_06820966.1| mraW [Staphylococcus aureus subsp. aureus EMRSA16] gi|297590699|ref|ZP_06949337.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus MN8] gi|49242137|emb|CAG40837.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MRSA252] gi|257271568|gb|EEV03714.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257275382|gb|EEV06869.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257278123|gb|EEV08771.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257281949|gb|EEV12086.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] gi|257284124|gb|EEV14247.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M876] gi|282313267|gb|EFB43663.1| mraW; SAM-dependent methyltransferase [Staphylococcus aureus subsp. aureus C101] gi|282317333|gb|EFB47707.1| mraW; SAM-dependent methyltransferase [Staphylococcus aureus subsp. aureus C427] gi|282321736|gb|EFB52061.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus M899] gi|282327342|gb|EFB57637.1| SAM-dependent methyltransferase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331453|gb|EFB60967.1| mraW; SAM-dependent methyltransferase [Staphylococcus aureus subsp. aureus Btn1260] gi|282595954|gb|EFC00918.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus C160] gi|283790663|gb|EFC29480.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus A017934/97] gi|290920035|gb|EFD97103.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus M1015] gi|291095299|gb|EFE25564.1| mraW; SAM-dependent methyltransferase [Staphylococcus aureus subsp. aureus 58-424] gi|291466540|gb|EFF09061.1| SAM-dependent methyltransferase [Staphylococcus aureus subsp. aureus M809] gi|295127737|gb|EFG57374.1| mraW [Staphylococcus aureus subsp. aureus EMRSA16] gi|297575585|gb|EFH94301.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus MN8] gi|315195675|gb|EFU26062.1| hypothetical protein CGSSa00_08420 [Staphylococcus aureus subsp. aureus CGS00] Length = 187 Score = 43.2 bits (101), Expect = 0.051, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 37/85 (43%), Gaps = 6/85 (7%) Query: 34 PAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91 P +++DAT G G + + +V D A+ ++ ++D+ SL + Sbjct: 18 ITPESIVVDATCGNGNDTLFLAEQVPEGHVYGFDIQDLALENTRDKVKDF-NHVSLVKDG 76 Query: 92 FSQLQDYVPD---KGVDGVVFDLGV 113 ++ ++ D +D +F+LG Sbjct: 77 HENIEHHINDAHKGHIDAAIFNLGY 101 >gi|330831512|ref|YP_004394464.1| ribosomal RNA small subunit methyltransferase B [Aeromonas veronii B565] gi|328806648|gb|AEB51847.1| Ribosomal RNA small subunit methyltransferase B [Aeromonas veronii B565] Length = 430 Score = 43.2 bits (101), Expect = 0.052, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 34/85 (40%), Gaps = 3/85 (3%) Query: 33 NPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCGQETMRDYKEQFSLFQ 89 +P PG+ +LDA GG + + + +A+D D + QE + + Sbjct: 240 DPQPGEWVLDACAAPGGKTAHLLERQPKLAGVVAVDADENRLKRVQENLDRIGLTAKVIH 299 Query: 90 ATFSQLQDYVPDKGVDGVVFDLGVS 114 + + + P+ D ++ D S Sbjct: 300 GDAAAPEQWWPEGQFDRILLDAPCS 324 >gi|326664911|ref|XP_003197913.1| PREDICTED: trimethylguanosine synthase-like [Danio rerio] Length = 809 Score = 43.2 bits (101), Expect = 0.052, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 2/69 (2%) Query: 38 KVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQL 95 ++I+DA G GG + F G VI +D DP ++ Q Y ++ Q F QL Sbjct: 645 ELIIDAFCGVGGNAIQFALTGKRVIGIDIDPVRLALAQHNAAVYGVEQRIDFLQGDFLQL 704 Query: 96 QDYVPDKGV 104 ++ V Sbjct: 705 APHLRGDMV 713 >gi|322516162|ref|ZP_08069095.1| rRNA methylase [Streptococcus vestibularis ATCC 49124] gi|322125338|gb|EFX96693.1| rRNA methylase [Streptococcus vestibularis ATCC 49124] Length = 182 Score = 43.2 bits (101), Expect = 0.052, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 7/90 (7%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-E 83 L +V+ + +DAT G G + + + A D A+ ++ + D + E Sbjct: 13 LAEVLD-----DESIAVDATMGNGNDTAFLAGLAKKIYAFDVQEQALEKTRQRLSDLEIE 67 Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 L L YV + + +F+LG Sbjct: 68 NAQLILDGHENLDRYVTEP-IRAAIFNLGY 96 >gi|226192654|pdb|3EGI|A Chain A, Methyltransferase Domain Of Human Trimethylguanosine Synthase Tgs1 Bound To M7gpppa (Inactive Form) gi|226192655|pdb|3EGI|B Chain B, Methyltransferase Domain Of Human Trimethylguanosine Synthase Tgs1 Bound To M7gpppa (Inactive Form) gi|226192656|pdb|3EGI|C Chain C, Methyltransferase Domain Of Human Trimethylguanosine Synthase Tgs1 Bound To M7gpppa (Inactive Form) gi|226192657|pdb|3EGI|D Chain D, Methyltransferase Domain Of Human Trimethylguanosine Synthase Tgs1 Bound To M7gpppa (Inactive Form) Length = 206 Score = 43.2 bits (101), Expect = 0.052, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 2/68 (2%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96 V++DA G GG + F G VIA+D DP ++ + Y ++ F L Sbjct: 46 VVVDAFCGVGGNTIQFALTGXRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA 105 Query: 97 DYVPDKGV 104 ++ V Sbjct: 106 SFLKADVV 113 >gi|220673234|emb|CAX12680.1| novel protein similar to vertebrate trimethylguanosine synthase homolog (S. cerevisiae) (TGS1) [Danio rerio] Length = 180 Score = 43.2 bits (101), Expect = 0.052, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 2/69 (2%) Query: 38 KVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQL 95 ++I+DA G GG + F G VI +D DP ++ Q Y ++ Q F QL Sbjct: 25 ELIIDAFCGVGGNAIQFALTGKRVIGIDIDPVRLALAQHNAAVYGVEQRIDFLQGDFLQL 84 Query: 96 QDYVPDKGV 104 ++ V Sbjct: 85 APHLRGDMV 93 >gi|254443830|ref|ZP_05057306.1| NOL1/NOP2/sun family protein [Verrucomicrobiae bacterium DG1235] gi|198258138|gb|EDY82446.1| NOL1/NOP2/sun family protein [Verrucomicrobiae bacterium DG1235] Length = 419 Score = 43.2 bits (101), Expect = 0.052, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 32/90 (35%), Gaps = 9/90 (10%) Query: 29 IALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDYKEQF 85 + LL P LDA GAGG + K V A D P A+ Q ++ + Sbjct: 228 LQLLKDRPTGNWLDACAGAGGKTLQLAKALQPSGKVAAYDPRPSAIRELQSRLKRSGLR- 286 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVSS 115 S L + DGV+ D S Sbjct: 287 -----NASVLDRRPTEGAYDGVLVDAPCSG 311 >gi|323442030|gb|EGA99666.1| hypothetical protein SAO46_2058 [Staphylococcus aureus O46] Length = 187 Score = 43.2 bits (101), Expect = 0.052, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 37/85 (43%), Gaps = 6/85 (7%) Query: 34 PAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91 P +++DAT G G + + +V D A+ ++ ++D+ SL + Sbjct: 18 ITPESIVVDATCGNGNDTLFLAEQVPEGHVYGFDIQDLALENTRDKVKDF-NHVSLIKDG 76 Query: 92 FSQLQDYVPD---KGVDGVVFDLGV 113 ++ ++ D +D +F+LG Sbjct: 77 HENIEHHINDAHKGHIDAAIFNLGY 101 >gi|302786828|ref|XP_002975185.1| hypothetical protein SELMODRAFT_57713 [Selaginella moellendorffii] gi|300157344|gb|EFJ23970.1| hypothetical protein SELMODRAFT_57713 [Selaginella moellendorffii] Length = 184 Score = 43.2 bits (101), Expect = 0.052, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 35/99 (35%), Gaps = 12/99 (12%) Query: 34 PAPGKVILDATFGAGGYSRSFCKM------GSNVIALDRDPFAVSCGQETMRDY-----K 82 PG ++D T G G + ++ V D A+ + + + Sbjct: 10 VRPGDTVVDTTCGNGIDTLLLARLVSPGSLLGRVYGFDIQKEALERTSLLLEQHLTPEQR 69 Query: 83 EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCG 121 + LFQ S++ + + D VV++LG D Sbjct: 70 NRVELFQDCHSKMGEVLKDVRARLVVYNLGYL-PHGDKE 107 >gi|262273082|ref|ZP_06050899.1| ribosomal RNA small subunit methyltransferase B [Grimontia hollisae CIP 101886] gi|262222838|gb|EEY74146.1| ribosomal RNA small subunit methyltransferase B [Grimontia hollisae CIP 101886] Length = 426 Score = 43.2 bits (101), Expect = 0.052, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 37/89 (41%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85 + L P G++ILD GG + + NV+A+D D ++ ++ ++ K + Sbjct: 235 AVDYLKPQAGELILDCCAAPGGKTCHILEHEPSANVVAMDVDAARLTRVEDNVKRLKLKA 294 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + ++ + D ++ D S Sbjct: 295 RVICGDARTPDEWWQGEQFDRILLDAPCS 323 >gi|169342633|ref|ZP_02863677.1| conserved hypothetical protein [Clostridium perfringens C str. JGS1495] gi|169299275|gb|EDS81344.1| conserved hypothetical protein [Clostridium perfringens C str. JGS1495] Length = 183 Score = 43.2 bits (101), Expect = 0.052, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 5/76 (6%) Query: 39 VILDATFGAGGYSRSFC-KMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD 97 + +DAT G G+ F ++ V A D AV+ + KE + + + Sbjct: 25 IAIDATLGN-GHDCDFLSELFKKVYAFDIQEEAVNSYK---SKNKENVEVILDSHENFKT 80 Query: 98 YVPDKGVDGVVFDLGV 113 Y+ ++ VD +V++LG Sbjct: 81 YIKEENVDCIVYNLGY 96 >gi|323439583|gb|EGA97303.1| hypothetical protein SAO11_1596 [Staphylococcus aureus O11] Length = 187 Score = 43.2 bits (101), Expect = 0.053, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 37/85 (43%), Gaps = 6/85 (7%) Query: 34 PAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91 P +++DAT G G + + +V D A+ ++ ++D+ SL + Sbjct: 18 ITPESIVVDATCGNGNDTLFLAEQVPEGHVYGFDIQDLALENTRDKVKDF-NHVSLIKDG 76 Query: 92 FSQLQDYVPD---KGVDGVVFDLGV 113 ++ ++ D +D +F+LG Sbjct: 77 HENIEHHINDAHKGHIDAAIFNLGY 101 >gi|302870918|ref|YP_003839554.1| short-chain dehydrogenase/reductase SDR [Caldicellulosiruptor obsidiansis OB47] gi|302573777|gb|ADL41568.1| short-chain dehydrogenase/reductase SDR [Caldicellulosiruptor obsidiansis OB47] Length = 264 Score = 43.2 bits (101), Expect = 0.053, Method: Composition-based stats. Identities = 35/231 (15%), Positives = 76/231 (32%), Gaps = 48/231 (20%) Query: 51 SRSFCKMGSNVIALDRDPFAVSCGQETMRD-YKEQFSLFQATFSQLQDYVPDKGVDGVVF 109 + SF + G+ V A+D+D A+ + D +K++ + F+ + ++ G V Sbjct: 31 ALSFLENGAKVFAIDKDREAIEDASQDFFDKFKDRITFFECDLADAKEIELVCQKIGDVA 90 Query: 110 DLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQ- 168 G +D+ ++ +GI ++ + + +V + ++ + Sbjct: 91 ---------------------GKIDVLVNNAGIGSTKWIEERSVDEWDEVINVNLRAPYL 129 Query: 169 -ASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRI----HPATRSFQALRIFVNN 223 + + + +T+ L S Y + I H S + +I VN Sbjct: 130 MVKFLLPYLKEGASIVNIASTRALMSEPNTEPYSASKGGILALTHSLAISLSSRKIRVNA 189 Query: 224 -EIEELAQG------------LRSAEKALKAGGLLIV-------VSFHSLE 254 + LR + G + V + F S E Sbjct: 190 ISPGWIETSRYKKRKYRREPELREVDHLQHPAGRVGVPEDIANAILFLSSE 240 >gi|291522365|emb|CBK80658.1| Putative rRNA methylase [Coprococcus catus GD/7] Length = 195 Score = 43.2 bits (101), Expect = 0.053, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 8/87 (9%) Query: 33 NPAPGKVILDATFGAGGY-SRSFCKMGSN---VIALDRDPFAVSCGQETM--RDYKEQFS 86 PG + D T G G+ + C++ + V + D P A+S + + Sbjct: 20 QIRPGDTVCDCTMGN-GHDTAYMCRLTGDTGTVYSFDIQPEALSRTEALLTEEHLLTPAR 78 Query: 87 LFQATFSQLQDYVPDKGVDGVVFDLGV 113 L + S L+ Y+ D + VF+LG Sbjct: 79 LILDSHSHLKQYI-DHPIRFFVFNLGY 104 >gi|309791546|ref|ZP_07686045.1| methyltransferase type 11 [Oscillochloris trichoides DG6] gi|308226406|gb|EFO80135.1| methyltransferase type 11 [Oscillochloris trichoides DG6] Length = 259 Score = 43.2 bits (101), Expect = 0.054, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 25/69 (36%) Query: 30 ALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQ 89 L+ + ILD G G +S + G VI LD P ++ + + + Q Sbjct: 38 QALSLRGVETILDLACGGGRHSIELAQRGLTVIGLDASPRVLAHARSRASELDLNATFVQ 97 Query: 90 ATFSQLQDY 98 L D Sbjct: 98 GDMRHLTDV 106 >gi|120555154|ref|YP_959505.1| 23S rRNA 5-methyluridine methyltransferase [Marinobacter aquaeolei VT8] gi|143581341|sp|A1U2U9|RUMA_MARAV RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|120325003|gb|ABM19318.1| 23S rRNA m(5)U-1939 methyltransferase [Marinobacter aquaeolei VT8] Length = 449 Score = 43.2 bits (101), Expect = 0.054, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 37/92 (40%), Gaps = 7/92 (7%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR-DYK 82 ++ + + L+ PG+ +LD G G ++ + G V+ ++ D V G+E R + Sbjct: 289 MVHRAVEWLDVQPGERVLDLFCGLGNFTLPLARKGGQVVGVEGDDAMVVRGRENARLNDL 348 Query: 83 EQFSLF----QATFSQLQDYVPDKGVDGVVFD 110 F+ +G D ++ D Sbjct: 349 SNVEFHGADLHGDFT--GQSWAKEGFDKILID 378 >gi|325202454|gb|ADY97908.1| putative rRNA methylase [Neisseria meningitidis M01-240149] gi|325207794|gb|ADZ03246.1| putative rRNA methylase [Neisseria meningitidis NZ-05/33] Length = 188 Score = 43.2 bits (101), Expect = 0.055, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 7/83 (8%) Query: 36 PGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQA 90 G LD T G G+ F V A D P A++ + +++ Sbjct: 20 EGGNALDGTAGN-GHDTLFLAQTAGIRGKVWAFDIQPQALNNTRCRLQEAGYSNVRFILD 78 Query: 91 TFSQLQDYVPDKGVDGVVFDLGV 113 L+ Y+P +D +F+ G Sbjct: 79 GHENLKQYIPKP-LDAAIFNFGW 100 >gi|121634545|ref|YP_974790.1| hypothetical protein NMC0701 [Neisseria meningitidis FAM18] gi|120866251|emb|CAM09992.1| hypothetical protein NMC0701 [Neisseria meningitidis FAM18] gi|308388937|gb|ADO31257.1| hypothetical protein NMBB_0845 [Neisseria meningitidis alpha710] Length = 188 Score = 43.2 bits (101), Expect = 0.055, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 7/83 (8%) Query: 36 PGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQA 90 G LD T G G+ F V A D P A++ + +++ Sbjct: 20 EGGNALDGTAGN-GHDTLFLAQTAGIRGKVWAFDIQPQALNNTRCRLQEAGYSNVRFILD 78 Query: 91 TFSQLQDYVPDKGVDGVVFDLGV 113 L+ Y+P +D +F+ G Sbjct: 79 GHENLKQYIPKP-LDAAIFNFGW 100 >gi|323702788|ref|ZP_08114448.1| putative rRNA methylase [Desulfotomaculum nigrificans DSM 574] gi|323532305|gb|EGB22184.1| putative rRNA methylase [Desulfotomaculum nigrificans DSM 574] Length = 192 Score = 43.2 bits (101), Expect = 0.055, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 9/86 (10%) Query: 35 APGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK---EQFSL 87 G +D T G G+ V A D A++ +E + E+ L Sbjct: 20 QAGDTAVDGTMGN-GHDTLILAQLVGPTGKVWAFDIQAQALANTRERLATAGVLDERIEL 78 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGV 113 Q ++ YV + +++LG Sbjct: 79 IQDGHEYIKKYV-SHPIQAAIYNLGY 103 >gi|126321364|ref|XP_001379655.1| PREDICTED: similar to hepatocellular carcinoma-associated antigen 137 [Monodelphis domestica] Length = 871 Score = 43.2 bits (101), Expect = 0.055, Method: Composition-based stats. Identities = 35/174 (20%), Positives = 58/174 (33%), Gaps = 29/174 (16%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96 +I+DA G GG + F G VIA+D DP + Y ++ F L Sbjct: 699 IIVDAFCGVGGNAIQFALTGKRVIAIDIDPAKIDLAHNNAEVYGVADKIEFICGDFMLLA 758 Query: 97 DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR--MSCSGISASDVVNQANVK 154 + D+ S D + + D+R MS G + + + Sbjct: 759 SDLK--------ADVVFLSPPWGGPD----YATAETFDIRTMMSPDGFE----IFRLSQM 802 Query: 155 DLTRILGILGEEKQASRIAH--------AIVKRRQSAPFQT-TQDLSSLIQKTV 199 I+ L ++A I + + +T T LI++TV Sbjct: 803 ITKNIVYFLPRNADIDQVASLAGPGGQVEIEQNFLNNKLKTITAYFGDLIRRTV 856 >gi|226312973|ref|YP_002772867.1| hypothetical protein BBR47_33860 [Brevibacillus brevis NBRC 100599] gi|226095921|dbj|BAH44363.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 186 Score = 43.2 bits (101), Expect = 0.057, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 7/82 (8%) Query: 37 GKVILDATFGAGGYS---RSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQAT 91 G+ ++DAT G G + + VIA D P A+ +E + + + A+ Sbjct: 20 GETVVDATMGNGNDTLFLAQLVQEEGKVIAFDIQPQAIEKTRERLEREGLANRVEMKLAS 79 Query: 92 FSQLQDYVPDKGVDGVVFDLGV 113 ++ + ++F+LG Sbjct: 80 HEEIDKL--EILAAAIMFNLGY 99 >gi|218283098|ref|ZP_03489188.1| hypothetical protein EUBIFOR_01774 [Eubacterium biforme DSM 3989] gi|218216119|gb|EEC89657.1| hypothetical protein EUBIFOR_01774 [Eubacterium biforme DSM 3989] Length = 175 Score = 43.2 bits (101), Expect = 0.057, Method: Composition-based stats. Identities = 22/115 (19%), Positives = 44/115 (38%), Gaps = 18/115 (15%) Query: 6 CKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIAL 64 K+M H + PVL ++ + +DAT G G + F + V Sbjct: 1 MKSMVDLSHEFL---KPVLHKQA----------ICVDATLGQGKDTDFFLSQNVHKVYGF 47 Query: 65 DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQID 119 + +E + + + F +++Y+ ++ VD ++F+ G Q D Sbjct: 48 EIQRDVFESTKERLGNQ--RTCFFHVGHEHMEEYIHEE-VDAIIFNFGY-FPQGD 98 >gi|310640916|ref|YP_003945674.1| rRNA methylase [Paenibacillus polymyxa SC2] gi|309245866|gb|ADO55433.1| Putative rRNA methylase [Paenibacillus polymyxa SC2] Length = 193 Score = 43.2 bits (101), Expect = 0.058, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 40/112 (35%), Gaps = 13/112 (11%) Query: 22 PVL--LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76 VL +++A PG +DAT G G + K V D A+ + Sbjct: 5 SVLSYAHQLVAA-RVQPGDTAVDATVGTGADTLFLAKAAGKRGRVYGFDIQQAALDYARR 63 Query: 77 TMRDYKE----QFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCG 121 + + + SL +++ VPD V V+F+LG + Sbjct: 64 RLEEDTSPSLAEVSLLLQGHEHMREVVPDLLHGKVAAVMFNLGYLPSEGADP 115 >gi|268593572|ref|ZP_06127793.1| ribosomal RNA small subunit methyltransferase B [Providencia rettgeri DSM 1131] gi|291310849|gb|EFE51302.1| ribosomal RNA small subunit methyltransferase B [Providencia rettgeri DSM 1131] Length = 427 Score = 43.2 bits (101), Expect = 0.058, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQF 85 LL P G+ ILD GG + ++ VIA+D D + + +E + K+ Sbjct: 238 CAELLEPQNGESILDLCAAPGGKTTHILELAPRANVIAVDIDEYRLKRVKENLIRLKQHA 297 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + Q +Q + + D+ D ++ D S Sbjct: 298 VVIQGDGTQPEKWAKDQQFDRILLDAPCS 326 >gi|15924753|ref|NP_372287.1| hypothetical protein SAV1763 [Staphylococcus aureus subsp. aureus Mu50] gi|15927338|ref|NP_374871.1| hypothetical protein SA1582 [Staphylococcus aureus subsp. aureus N315] gi|21283433|ref|NP_646521.1| hypothetical protein MW1704 [Staphylococcus aureus subsp. aureus MW2] gi|49486586|ref|YP_043807.1| hypothetical protein SAS1687 [Staphylococcus aureus subsp. aureus MSSA476] gi|57652059|ref|YP_186644.1| hypothetical protein SACOL1811 [Staphylococcus aureus subsp. aureus COL] gi|87161375|ref|YP_494401.1| hypothetical protein SAUSA300_1707 [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195575|ref|YP_500381.1| hypothetical protein SAOUHSC_01878 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148268239|ref|YP_001247182.1| hypothetical protein SaurJH9_1816 [Staphylococcus aureus subsp. aureus JH9] gi|150394307|ref|YP_001316982.1| hypothetical protein SaurJH1_1851 [Staphylococcus aureus subsp. aureus JH1] gi|151221866|ref|YP_001332688.1| hypothetical protein NWMN_1654 [Staphylococcus aureus subsp. aureus str. Newman] gi|156980080|ref|YP_001442339.1| hypothetical protein SAHV_1749 [Staphylococcus aureus subsp. aureus Mu3] gi|161509979|ref|YP_001575638.1| hypothetical protein USA300HOU_1752 [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221141483|ref|ZP_03565976.1| hypothetical protein SauraJ_07563 [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253315864|ref|ZP_04839077.1| hypothetical protein SauraC_06907 [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253732414|ref|ZP_04866579.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253734455|ref|ZP_04868620.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus TCH130] gi|255006549|ref|ZP_05145150.2| hypothetical protein SauraM_08770 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257794144|ref|ZP_05643123.1| conserved hypothetical protein [Staphylococcus aureus A9781] gi|258415848|ref|ZP_05682119.1| conserved hypothetical protein [Staphylococcus aureus A9763] gi|258420677|ref|ZP_05683616.1| conserved hypothetical protein [Staphylococcus aureus A9719] gi|258443785|ref|ZP_05692124.1| conserved hypothetical protein [Staphylococcus aureus A8115] gi|258445996|ref|ZP_05694172.1| conserved hypothetical protein [Staphylococcus aureus A6300] gi|258448276|ref|ZP_05696403.1| conserved hypothetical protein [Staphylococcus aureus A6224] gi|258452312|ref|ZP_05700325.1| conserved hypothetical protein [Staphylococcus aureus A5948] gi|258454196|ref|ZP_05702167.1| conserved hypothetical protein [Staphylococcus aureus A5937] gi|262049070|ref|ZP_06021948.1| hypothetical protein SAD30_2275 [Staphylococcus aureus D30] gi|262053062|ref|ZP_06025235.1| hypothetical protein SA930_1119 [Staphylococcus aureus 930918-3] gi|269203399|ref|YP_003282668.1| hypothetical protein SAAV_1772 [Staphylococcus aureus subsp. aureus ED98] gi|282893255|ref|ZP_06301489.1| mraW; SAM-dependent methyltransferase [Staphylococcus aureus A8117] gi|282925648|ref|ZP_06333297.1| mraW; SAM-dependent methyltransferase [Staphylococcus aureus A9765] gi|282927890|ref|ZP_06335501.1| mraW; SAM-dependent methyltransferase [Staphylococcus aureus A10102] gi|284024808|ref|ZP_06379206.1| hypothetical protein Saura13_09455 [Staphylococcus aureus subsp. aureus 132] gi|294849922|ref|ZP_06790661.1| mraW [Staphylococcus aureus A9754] gi|295406072|ref|ZP_06815880.1| mraW [Staphylococcus aureus A8819] gi|296276045|ref|ZP_06858552.1| hypothetical protein SauraMR_06837 [Staphylococcus aureus subsp. aureus MR1] gi|297207524|ref|ZP_06923960.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297245003|ref|ZP_06928880.1| mraW [Staphylococcus aureus A8796] gi|300911608|ref|ZP_07129052.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus TCH70] gi|304380644|ref|ZP_07363315.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|13701557|dbj|BAB42850.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus N315] gi|14247535|dbj|BAB57925.1| similar to SAM-dependent methyltransferase [Staphylococcus aureus subsp. aureus Mu50] gi|21204874|dbj|BAB95569.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MW2] gi|49245029|emb|CAG43490.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MSSA476] gi|57286245|gb|AAW38339.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus COL] gi|87127349|gb|ABD21863.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87203133|gb|ABD30943.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147741308|gb|ABQ49606.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus JH9] gi|149946759|gb|ABR52695.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus JH1] gi|150374666|dbj|BAF67926.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156722215|dbj|BAF78632.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|160368788|gb|ABX29759.1| hypothetical protein USA300HOU_1752 [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253723804|gb|EES92533.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253727509|gb|EES96238.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus TCH130] gi|257788116|gb|EEV26456.1| conserved hypothetical protein [Staphylococcus aureus A9781] gi|257839441|gb|EEV63914.1| conserved hypothetical protein [Staphylococcus aureus A9763] gi|257843281|gb|EEV67691.1| conserved hypothetical protein [Staphylococcus aureus A9719] gi|257851191|gb|EEV75134.1| conserved hypothetical protein [Staphylococcus aureus A8115] gi|257855238|gb|EEV78177.1| conserved hypothetical protein [Staphylococcus aureus A6300] gi|257858515|gb|EEV81391.1| conserved hypothetical protein [Staphylococcus aureus A6224] gi|257860037|gb|EEV82872.1| conserved hypothetical protein [Staphylococcus aureus A5948] gi|257863648|gb|EEV86405.1| conserved hypothetical protein [Staphylococcus aureus A5937] gi|259159039|gb|EEW44110.1| hypothetical protein SA930_1119 [Staphylococcus aureus 930918-3] gi|259162887|gb|EEW47451.1| hypothetical protein SAD30_2275 [Staphylococcus aureus D30] gi|262075689|gb|ACY11662.1| hypothetical protein SAAV_1772 [Staphylococcus aureus subsp. aureus ED98] gi|269941239|emb|CBI49627.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus TW20] gi|282590400|gb|EFB95479.1| mraW; SAM-dependent methyltransferase [Staphylococcus aureus A10102] gi|282592428|gb|EFB97442.1| mraW; SAM-dependent methyltransferase [Staphylococcus aureus A9765] gi|282764573|gb|EFC04699.1| mraW; SAM-dependent methyltransferase [Staphylococcus aureus A8117] gi|285817443|gb|ADC37930.1| SAM-dependent methyltransferase, MraW methylase family [Staphylococcus aureus 04-02981] gi|294823261|gb|EFG39691.1| mraW [Staphylococcus aureus A9754] gi|294969069|gb|EFG45090.1| mraW [Staphylococcus aureus A8819] gi|296887860|gb|EFH26757.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297178083|gb|EFH37331.1| mraW [Staphylococcus aureus A8796] gi|298695029|gb|ADI98251.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus ED133] gi|300887029|gb|EFK82230.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus TCH70] gi|302333425|gb|ADL23618.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus JKD6159] gi|302751588|gb|ADL65765.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340751|gb|EFM06680.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312830139|emb|CBX34981.1| rRNA methylase family protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315130599|gb|EFT86585.1| hypothetical protein CGSSa03_10160 [Staphylococcus aureus subsp. aureus CGS03] gi|315197231|gb|EFU27570.1| hypothetical protein CGSSa01_01071 [Staphylococcus aureus subsp. aureus CGS01] gi|320140772|gb|EFW32623.1| rRNA methylase family protein [Staphylococcus aureus subsp. aureus MRSA131] gi|320143789|gb|EFW35563.1| rRNA methylase family protein [Staphylococcus aureus subsp. aureus MRSA177] gi|329314437|gb|AEB88850.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus T0131] gi|329727003|gb|EGG63460.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus 21189] gi|329727361|gb|EGG63817.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus 21172] gi|329733230|gb|EGG69567.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus 21193] Length = 187 Score = 43.2 bits (101), Expect = 0.059, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 37/85 (43%), Gaps = 6/85 (7%) Query: 34 PAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91 P +++DAT G G + + +V D A+ ++ ++D+ SL + Sbjct: 18 ITPESIVVDATCGNGNDTLFLAEQVPEGHVYGFDIQDLALENTRDKVKDF-NHVSLIKDG 76 Query: 92 FSQLQDYVPD---KGVDGVVFDLGV 113 ++ ++ D +D +F+LG Sbjct: 77 HENIEHHINDAHKGHIDAAIFNLGY 101 >gi|326333188|ref|ZP_08199435.1| UbiE/COQ5 methyltransferase [Nocardioidaceae bacterium Broad-1] gi|325948832|gb|EGD40925.1| UbiE/COQ5 methyltransferase [Nocardioidaceae bacterium Broad-1] Length = 231 Score = 43.2 bits (101), Expect = 0.059, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 41/109 (37%), Gaps = 15/109 (13%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDY 81 L E+ + L G+ +LD G G S + + G+ V D D A+ Sbjct: 44 LHERTVELAGIRAGQTVLDVGCGTGNLSFAVLRAVPGAVVTGHDPDASALRLAARKAGRR 103 Query: 82 KEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSS---MQIDCGDR-GF 125 + SL Q +P+ G VD + VSS +D R GF Sbjct: 104 GVRLSLVQG---YADRLLPEDGSVDHI-----VSSLALHHVDDAGREGF 144 >gi|270013278|gb|EFA09726.1| hypothetical protein TcasGA2_TC011859 [Tribolium castaneum] Length = 425 Score = 43.2 bits (101), Expect = 0.059, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 37/95 (38%), Gaps = 13/95 (13%) Query: 28 VIALLNPAPGKVILDA--------TFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 +L P P ILD T + + K ++A+D+ P V+ ++ Sbjct: 221 CTHVLAPCPNDTILDMCASPGNKTT-----HIAALLKNQGRLVAIDKTPTKVAQLRQRCE 275 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 ++ + + Q ++L D + D ++ D S Sbjct: 276 NFGAKVEILQTDSTKLLDRFCYESFDKILLDAPCS 310 >gi|189241190|ref|XP_001810247.1| PREDICTED: similar to GA10764-PA [Tribolium castaneum] Length = 516 Score = 43.2 bits (101), Expect = 0.059, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 37/95 (38%), Gaps = 13/95 (13%) Query: 28 VIALLNPAPGKVILDA--------TFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 +L P P ILD T + + K ++A+D+ P V+ ++ Sbjct: 312 CTHVLAPCPNDTILDMCASPGNKTT-----HIAALLKNQGRLVAIDKTPTKVAQLRQRCE 366 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 ++ + + Q ++L D + D ++ D S Sbjct: 367 NFGAKVEILQTDSTKLLDRFCYESFDKILLDAPCS 401 >gi|308161050|gb|EFO63512.1| Met-10 protein [Giardia lamblia P15] Length = 430 Score = 43.2 bits (101), Expect = 0.060, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 14/118 (11%) Query: 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAV 71 H ++ H+ P ++LD T G G ++ K + N+I D +P A Sbjct: 224 HLSLAKHISQ---------VIRPNDLVLDGTCGIGPHALLLAKRFNFTNLICNDLNPDAY 274 Query: 72 SCGQE--TMRDYKEQFSLFQATFSQLQD-YVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126 +E M + F S L + +P+K + V+F L S+ + +GFS Sbjct: 275 KSLKENINMNKVDHAITCFNEDVSSLLERLLPEKNLKAVIFSLPELSIDLLKAMKGFS 332 >gi|282889803|ref|ZP_06298342.1| hypothetical protein pah_c004o195 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500377|gb|EFB42657.1| hypothetical protein pah_c004o195 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 204 Score = 43.2 bits (101), Expect = 0.060, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 13/91 (14%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMG------SNVIALDRDPFAVSCGQETM-----RDYK 82 PG ++DAT G G+ VI +D P A++ +E + + Sbjct: 23 VNPGDTVIDATCGN-GHDTLILAKLVLDSSSGCVIGMDVQPQAIAATREKLAKELSANQM 81 Query: 83 EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 E+ L A S + V +V++LG Sbjct: 82 ERLHLHCACHSIFP-IQTENSVQLIVYNLGY 111 >gi|258424175|ref|ZP_05687057.1| conserved hypothetical protein [Staphylococcus aureus A9635] gi|257845796|gb|EEV69828.1| conserved hypothetical protein [Staphylococcus aureus A9635] Length = 187 Score = 43.2 bits (101), Expect = 0.060, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 37/85 (43%), Gaps = 6/85 (7%) Query: 34 PAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91 P +++DAT G G + + +V D A+ ++ ++D+ SL + Sbjct: 18 ITPESIVVDATCGNGNDTLFLAEQVPEGHVYGFDIQDLALENTRDKVKDF-NHVSLIKDG 76 Query: 92 FSQLQDYVPD---KGVDGVVFDLGV 113 ++ ++ D +D +F+LG Sbjct: 77 HENIEHHINDAHKGHIDAAIFNLGY 101 >gi|238788880|ref|ZP_04632670.1| Ribosomal RNA small subunit methyltransferase B [Yersinia frederiksenii ATCC 33641] gi|238722907|gb|EEQ14557.1| Ribosomal RNA small subunit methyltransferase B [Yersinia frederiksenii ATCC 33641] Length = 429 Score = 43.2 bits (101), Expect = 0.061, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85 + LL+P G+ ILD GG + + +V+A+D D ++ +E ++ K Sbjct: 238 CVDLLDPQNGEQILDLCAAPGGKTTHILEAAPKTHVLAVDIDEQRLNRVKENLQRLKLNA 297 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + + D+ D ++ D S Sbjct: 298 VVRVGDGRTPDTWCGDQQFDRILLDAPCS 326 >gi|314936143|ref|ZP_07843490.1| putative rRNA methylase [Staphylococcus hominis subsp. hominis C80] gi|313654762|gb|EFS18507.1| putative rRNA methylase [Staphylococcus hominis subsp. hominis C80] Length = 186 Score = 43.2 bits (101), Expect = 0.061, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 6/85 (7%) Query: 34 PAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91 +++DAT G G + + V D A+ +E + +K +L Sbjct: 18 IQDDSIVIDATCGNGNDTLFLAEQVPNGKVFGFDIQKEAIEHTKEKIVSFKH-VTLIHDG 76 Query: 92 FSQLQDYVPDK---GVDGVVFDLGV 113 + + +P VD +F+LG Sbjct: 77 HENILNDIPSDVIGNVDAAIFNLGY 101 >gi|312143433|ref|YP_003994879.1| Methyltransferase type 11 [Halanaerobium sp. 'sapolanicus'] gi|311904084|gb|ADQ14525.1| Methyltransferase type 11 [Halanaerobium sp. 'sapolanicus'] Length = 255 Score = 43.2 bits (101), Expect = 0.061, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 6/90 (6%) Query: 24 LLEKVIALL-NPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR--- 79 LL++ + L N +LD G G Y+ + G VI +D D ++ + Sbjct: 24 LLDQTFSYLKNDKKQTKLLDVGCGTGSYAVALAGKGYQVIGIDLDSEMIALAKNKQAGLS 83 Query: 80 --DYKEQFSLFQATFSQLQDYVPDKGVDGV 107 + +++ F +L+D DG+ Sbjct: 84 QTEAEDRLDFFVLGMLELKDKFSQDTFDGI 113 >gi|261364723|ref|ZP_05977606.1| putative rRNA methylase [Neisseria mucosa ATCC 25996] gi|288567020|gb|EFC88580.1| putative rRNA methylase [Neisseria mucosa ATCC 25996] Length = 189 Score = 43.2 bits (101), Expect = 0.061, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 11/95 (11%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRD 80 LL++ + P LD T G G + + G V A D A++ + + + Sbjct: 13 LLKQAL-----KPDARALDGTAGNGNDTLMLARSIGSGGKVWAFDVQEQALANTRMRLEE 67 Query: 81 YK--EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 ++ L L ++ + +D VF+ G Sbjct: 68 AGMADRVELILDGHENLATHIREP-LDAAVFNFGW 101 >gi|260557274|ref|ZP_05829490.1| SAM-dependent methyltransferase [Acinetobacter baumannii ATCC 19606] gi|260409380|gb|EEX02682.1| SAM-dependent methyltransferase [Acinetobacter baumannii ATCC 19606] Length = 194 Score = 43.2 bits (101), Expect = 0.063, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 29/77 (37%), Gaps = 3/77 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETM 78 H P+L EK + P V +D GAG S G NV A D A E Sbjct: 13 KHRPIL-EKALGYFPNLPL-VAIDCGCGAGNESAYLLSKGFNVHAFDISIDAQKVCTERF 70 Query: 79 RDYKEQFSLFQATFSQL 95 +D +F + +F Sbjct: 71 KD-DSKFIFYHESFEDF 86 >gi|260548967|ref|ZP_05823189.1| SAM-dependent methyltransferase [Acinetobacter sp. RUH2624] gi|260408135|gb|EEX01606.1| SAM-dependent methyltransferase [Acinetobacter sp. RUH2624] Length = 192 Score = 43.2 bits (101), Expect = 0.063, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 29/77 (37%), Gaps = 3/77 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETM 78 H P+L EK + P V +D GAG S G NV A D A E Sbjct: 13 KHRPIL-EKALGYFPNLPL-VAIDCGCGAGNESAYLLSKGFNVHAFDISIDAQKVCTERF 70 Query: 79 RDYKEQFSLFQATFSQL 95 +D +F + +F Sbjct: 71 KD-DSKFIFYHESFEDF 86 >gi|126642775|ref|YP_001085759.1| SAM-dependent methyltransferase [Acinetobacter baumannii ATCC 17978] gi|169632585|ref|YP_001706321.1| putative SAM-dependent methyltransferase [Acinetobacter baumannii SDF] gi|126388659|gb|ABO13157.1| SAM-dependent methyltransferase [Acinetobacter baumannii ATCC 17978] gi|169151377|emb|CAP00101.1| conserved hypothetical protein; putative SAM-dependent methyltransferase [Acinetobacter baumannii] Length = 194 Score = 43.2 bits (101), Expect = 0.063, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 29/77 (37%), Gaps = 3/77 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETM 78 H P+L EK + P V +D GAG S G NV A D A E Sbjct: 13 KHRPIL-EKALGYFPNLPL-VAIDCGCGAGNESAYLLSKGFNVHAFDISIDAQKVCTERF 70 Query: 79 RDYKEQFSLFQATFSQL 95 +D +F + +F Sbjct: 71 KD-DSKFIFYHESFEDF 86 >gi|257387329|ref|YP_003177102.1| methyltransferase type 11 [Halomicrobium mukohataei DSM 12286] gi|257169636|gb|ACV47395.1| Methyltransferase type 11 [Halomicrobium mukohataei DSM 12286] Length = 206 Score = 43.2 bits (101), Expect = 0.064, Method: Composition-based stats. Identities = 12/73 (16%), Positives = 25/73 (34%), Gaps = 1/73 (1%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83 + ++ IA L+ P +LD G G + + +V LD+ + Sbjct: 33 MRDEAIAKLDIEPDDHVLDVGCGTGFATEGLLEATEHVYGLDQSAHQLEKAYAKFGKRGP 92 Query: 84 QFSLFQATFSQLQ 96 + + +L Sbjct: 93 -VAFHRGDAERLP 104 >gi|329120638|ref|ZP_08249301.1| rRNA methyltransferase [Neisseria bacilliformis ATCC BAA-1200] gi|327460862|gb|EGF07196.1| rRNA methyltransferase [Neisseria bacilliformis ATCC BAA-1200] Length = 200 Score = 42.9 bits (100), Expect = 0.065, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 8/85 (9%) Query: 35 APGKVILDATFGAGGYSRSFCK----MGSNVIALDRDPFAVSCGQETM--RDYKEQFSLF 88 G LD T G G+ V A D P A++ ++ + +Q L Sbjct: 24 KSGGRALDGTAGN-GHDTLLLAWLAGEDGIVWAFDVQPQALANTKDRLKTAGADKQVRLI 82 Query: 89 QATFSQLQDYVPDKGVDGVVFDLGV 113 A+ ++L DYV + +D +F+ G Sbjct: 83 CASHARLADYVAEP-LDAAMFNFGY 106 >gi|212632964|ref|YP_002309489.1| Fmu, rRNA SAM-dependent methyltransferase [Shewanella piezotolerans WP3] gi|212554448|gb|ACJ26902.1| Fmu, rRNA SAM-dependent methyltransferase [Shewanella piezotolerans WP3] Length = 428 Score = 42.9 bits (100), Expect = 0.065, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 2/86 (2%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQFSLF 88 LL P +++LDA GG + ++ + ++A+D D + Q+ + + L Sbjct: 237 LLAPQGDELVLDACAAPGGKTCHLLELAPDIKLVAVDFDAKRLERVQQNLDRLSLEAELI 296 Query: 89 QATFSQLQDYVPDKGVDGVVFDLGVS 114 + + + D ++ D S Sbjct: 297 HGDAADIDSWWQGDKFDRILLDAPCS 322 >gi|282911386|ref|ZP_06319188.1| SAM-dependent methyltransferase [Staphylococcus aureus subsp. aureus WBG10049] gi|282325081|gb|EFB55391.1| SAM-dependent methyltransferase [Staphylococcus aureus subsp. aureus WBG10049] gi|312437781|gb|ADQ76852.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus TCH60] Length = 187 Score = 42.9 bits (100), Expect = 0.065, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 37/85 (43%), Gaps = 6/85 (7%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91 P +++DAT G G + + +V D A+ ++ ++D+ SL + Sbjct: 18 ITPESIVVDATCGNGNDTLFLAEQVPVGHVYGFDIQDLALENTRDKVKDF-NHVSLVKDG 76 Query: 92 FSQLQDYVPD---KGVDGVVFDLGV 113 ++ ++ D +D +F+LG Sbjct: 77 HENIEHHINDAHKGHIDAAIFNLGY 101 >gi|194214910|ref|XP_001497936.2| PREDICTED: trimethylguanosine synthase homolog (S. cerevisiae) [Equus caballus] Length = 946 Score = 42.9 bits (100), Expect = 0.065, Method: Composition-based stats. Identities = 32/172 (18%), Positives = 58/172 (33%), Gaps = 23/172 (13%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96 ++DA G GG + F G VIA+D DP + + Y ++ F L Sbjct: 696 TVVDAFCGVGGNTIQFALTGKRVIAIDIDPVKIDLARNNAEVYGIADKIEFICGDFLLLA 755 Query: 97 DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR--MSCSGISASDVVNQANVK 154 + D+ S D + + D+R MS G + + Sbjct: 756 SQLK--------ADVVFLSPPWGGPD----YATAETFDIRTMMSPDGFEIFRLSQKIT-N 802 Query: 155 DLTRILGILGEEKQASRIAH-----AIVKRRQSAPFQT-TQDLSSLIQKTVY 200 ++ L + Q + +A I + + +T T LI+++ Sbjct: 803 NIVYFLPRNADIDQVASLAGPGGQVEIEQNFLNNKLKTITAYFGDLIRRSAP 854 >gi|313890849|ref|ZP_07824473.1| putative rRNA methylase [Streptococcus pseudoporcinus SPIN 20026] gi|313120747|gb|EFR43862.1| putative rRNA methylase [Streptococcus pseudoporcinus SPIN 20026] Length = 183 Score = 42.9 bits (100), Expect = 0.067, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 8/90 (8%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-E 83 L+ ++ +++DAT G G + F ++ A D A+ E ++ + E Sbjct: 13 LDTILDA-----NSILVDATMGNGNDTLYFAPKVKSLYAFDVQKKALQVTGEKLQKAQLE 67 Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 L Q ++ Y+ D +F+LG Sbjct: 68 NVQLIQDGHEKVDTYLD--HADAAIFNLGY 95 >gi|91791391|ref|YP_561042.1| sun protein [Shewanella denitrificans OS217] gi|91713393|gb|ABE53319.1| sun protein [Shewanella denitrificans OS217] Length = 428 Score = 42.9 bits (100), Expect = 0.068, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 2/86 (2%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQFSLF 88 LL P +V+LDA GG + ++ N + A+D D + Q+ + K + Sbjct: 236 LLAPQANEVVLDACAAPGGKTCHLLEIAPNISLTAVDFDLKRLERVQQNLDRLKLTAQVI 295 Query: 89 QATFSQLQDYVPDKGVDGVVFDLGVS 114 + + + D ++ D S Sbjct: 296 HGDAANIDSWWQGDKFDRILLDAPCS 321 >gi|15676645|ref|NP_273789.1| hypothetical protein NMB0747 [Neisseria meningitidis MC58] gi|7225976|gb|AAF41160.1| conserved hypothetical protein [Neisseria meningitidis MC58] gi|325140096|gb|EGC62625.1| putative rRNA methylase [Neisseria meningitidis CU385] Length = 188 Score = 42.9 bits (100), Expect = 0.068, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 7/83 (8%) Query: 36 PGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQA 90 G LD T G G+ F V A D P A++ + +++ L Sbjct: 20 EGGNALDGTAGN-GHDTLFLAQTAGIRGKVWAFDIQPQALNNTRCRLQEAGYSNVRLILD 78 Query: 91 TFSQLQDYVPDKGVDGVVFDLGV 113 L+ Y+P +D +F+ G Sbjct: 79 GHENLKQYIPKP-LDAAIFNFGW 100 >gi|218767870|ref|YP_002342382.1| hypothetical protein NMA0960 [Neisseria meningitidis Z2491] gi|121051878|emb|CAM08184.1| hypothetical protein NMA0960 [Neisseria meningitidis Z2491] gi|319410117|emb|CBY90453.1| putative rRNA methyltransferase [Neisseria meningitidis WUE 2594] Length = 188 Score = 42.9 bits (100), Expect = 0.068, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 7/83 (8%) Query: 36 PGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQA 90 G LD T G G+ F V A D P A++ + +++ L Sbjct: 20 EGGNALDGTAGN-GHDTLFLAQTAGIRGKVWAFDIQPQALNNTRCRLQEAGYSNVRLILD 78 Query: 91 TFSQLQDYVPDKGVDGVVFDLGV 113 L+ Y+P +D +F+ G Sbjct: 79 GHENLKQYIPKP-LDAAIFNFGW 100 >gi|114561210|ref|YP_748723.1| sun protein [Shewanella frigidimarina NCIMB 400] gi|114332503|gb|ABI69885.1| sun protein [Shewanella frigidimarina NCIMB 400] Length = 427 Score = 42.9 bits (100), Expect = 0.068, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 37/86 (43%), Gaps = 2/86 (2%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88 LL P +++LDA GG S ++ N++A+D D ++ Q+ + + L Sbjct: 235 LLAPTADELVLDACAAPGGKSCHLLELAPTINLVAVDFDQKRLARVQQNLDRLHLKAQLI 294 Query: 89 QATFSQLQDYVPDKGVDGVVFDLGVS 114 + + + + D ++ D S Sbjct: 295 HGDAADIPSWWQGQQFDRILLDAPCS 320 >gi|329768391|ref|ZP_08259885.1| hypothetical protein HMPREF0428_01582 [Gemella haemolysans M341] gi|328837144|gb|EGF86785.1| hypothetical protein HMPREF0428_01582 [Gemella haemolysans M341] Length = 189 Score = 42.9 bits (100), Expect = 0.069, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 40/93 (43%), Gaps = 9/93 (9%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDY- 81 LL++VI +++DAT G G + K + V A D A+ +++ Sbjct: 11 LLKEVID-----KNSIVVDATAGNGNDTLFLAKTSAKKVYAFDIQQLAIENTTNLIKEAE 65 Query: 82 -KEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 ++ + + + Y+ + + VVF+LG Sbjct: 66 LADKCEIILDSHFEFDKYINE-KIRAVVFNLGY 97 >gi|322831104|ref|YP_004211131.1| sun protein [Rahnella sp. Y9602] gi|321166305|gb|ADW72004.1| sun protein [Rahnella sp. Y9602] Length = 429 Score = 42.9 bits (100), Expect = 0.069, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85 + LL+P G++ILD GG + + +V+A+D D + E ++ K Sbjct: 238 SVDLLDPQNGELILDLCCAPGGKTTHILEAAPKAHVLAVDVDEQRLKRVHENLQRLKLSA 297 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + Q + Q + D+ D ++ D S Sbjct: 298 EVKQGDGREPQMWAGDRIFDRILLDAPCS 326 >gi|119773183|ref|YP_925923.1| sun protein [Shewanella amazonensis SB2B] gi|119765683|gb|ABL98253.1| sun protein [Shewanella amazonensis SB2B] Length = 427 Score = 42.9 bits (100), Expect = 0.069, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 1/85 (1%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSLFQ 89 LL P G+++LDA GG S ++ ++A+D D + + + K + Sbjct: 235 LLAPRDGELVLDACAAPGGKSCHLLELADIELVAVDFDQKRLERVSQNLERLKLDARVIH 294 Query: 90 ATFSQLQDYVPDKGVDGVVFDLGVS 114 + + D ++ D S Sbjct: 295 GDAGDIGSWWQGGKFDRILLDAPCS 319 >gi|158522242|ref|YP_001530112.1| sun protein [Desulfococcus oleovorans Hxd3] gi|158511068|gb|ABW68035.1| sun protein [Desulfococcus oleovorans Hxd3] Length = 468 Score = 42.9 bits (100), Expect = 0.070, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 12/91 (13%) Query: 33 NPAPGKVILDATFGAG---GYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQ 89 +P PG+ +LDA G G G+ + ++A DRD + E + + + Sbjct: 269 DPRPGQRVLDACAGLGGKTGHLARLMENQGRIVAADRD----TAKLERLAGEMTRLGITN 324 Query: 90 ATFSQLQDYVPDK-----GVDGVVFDLGVSS 115 L VP++ G D V+ D S Sbjct: 325 VRPMTLDMLVPEQLKDAGGFDRVLADCPCSG 355 >gi|325267933|ref|ZP_08134582.1| ribosomal RNA small subunit methyltransferase B [Kingella denitrificans ATCC 33394] gi|324980619|gb|EGC16282.1| ribosomal RNA small subunit methyltransferase B [Kingella denitrificans ATCC 33394] Length = 421 Score = 42.9 bits (100), Expect = 0.071, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 4/96 (4%) Query: 20 HVPVL---LEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQ 75 HV V ++ LL P + ILDA GG + + + ALD DP + Q Sbjct: 225 HVSVQDWGAQQAAYLLQPQNNERILDACAAPGGKTGHILEMADCALTALDIDPVRLQRVQ 284 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDL 111 + + L A L D+ + D ++ D+ Sbjct: 285 DNLTRLGLHAQLHCAAAQNLDDWWDGQPFDAILADV 320 >gi|332163229|ref|YP_004299806.1| 16S rRNA methyltransferase B [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318607711|emb|CBY29209.1| ribosomal RNA small subunit methyltransferase B [Yersinia enterocolitica subsp. palearctica Y11] gi|325667459|gb|ADZ44103.1| 16S rRNA methyltransferase B [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 429 Score = 42.9 bits (100), Expect = 0.071, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85 + LL+P G+ ILD GG + + +V+A+D D +S +E ++ K Sbjct: 238 CVDLLDPQEGEQILDLCAAPGGKTTHILEAAPKAHVLAVDIDEQRLSRVKENLQRLKLHA 297 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + ++ D+ D ++ D S Sbjct: 298 DVRVGDGRTPDEWCGDQQFDRILLDAPCS 326 >gi|304412733|ref|ZP_07394336.1| sun protein [Shewanella baltica OS183] gi|307305802|ref|ZP_07585548.1| sun protein [Shewanella baltica BA175] gi|304348943|gb|EFM13358.1| sun protein [Shewanella baltica OS183] gi|306911295|gb|EFN41721.1| sun protein [Shewanella baltica BA175] Length = 428 Score = 42.9 bits (100), Expect = 0.071, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 2/86 (2%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88 LL P ++ILDA GG S ++ ++A+D D + Q+ + + L Sbjct: 235 LLAPQANELILDACAAPGGKSCHLLELEPSIKLVAVDFDAKRLERVQQNLDRLSLKAELI 294 Query: 89 QATFSQLQDYVPDKGVDGVVFDLGVS 114 + + + D ++ D S Sbjct: 295 HGDAANIDSWWQGGQFDRILLDAPCS 320 >gi|217971245|ref|YP_002355996.1| sun protein [Shewanella baltica OS223] gi|217496380|gb|ACK44573.1| sun protein [Shewanella baltica OS223] Length = 428 Score = 42.9 bits (100), Expect = 0.071, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 2/86 (2%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88 LL P ++ILDA GG S ++ ++A+D D + Q+ + + L Sbjct: 235 LLAPQANELILDACAAPGGKSCHLLELEPSIKLVAVDFDAKRLERVQQNLDRLSLKAELI 294 Query: 89 QATFSQLQDYVPDKGVDGVVFDLGVS 114 + + + D ++ D S Sbjct: 295 HGDAANIDSWWQGGQFDRILLDAPCS 320 >gi|332159509|ref|YP_004424788.1| fmu protein [Pyrococcus sp. NA2] gi|331034972|gb|AEC52784.1| fmu protein [Pyrococcus sp. NA2] Length = 451 Score = 42.9 bits (100), Expect = 0.072, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 34/87 (39%), Gaps = 12/87 (13%) Query: 32 LNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ---- 84 LNP PG++++D GG + K + A D D + ++++ ++ Sbjct: 257 LNPQPGEIVVDLAAAPGGKTTHMAELMKNKGKIYAFDIDKMR----MKRLKEFVQRMGIK 312 Query: 85 -FSLFQATFSQLQDYVPDKGVDGVVFD 110 + + + ++ D V+ D Sbjct: 313 IVKPIIKDARKAPEIIGEEVADKVLLD 339 >gi|322385960|ref|ZP_08059600.1| rRNA methylase [Streptococcus cristatus ATCC 51100] gi|321269943|gb|EFX52863.1| rRNA methylase [Streptococcus cristatus ATCC 51100] Length = 182 Score = 42.9 bits (100), Expect = 0.072, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 6/92 (6%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82 + +A + V++DAT G G+ + ++ V A D AV ++ + + Sbjct: 7 MAHAFLAEVVTKED-VVVDATMGN-GHDTLFLAQLAKQVYAFDIQEQAVEKTRQRLAEAG 64 Query: 83 -EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + L A L Y +F+LG Sbjct: 65 LDNAQLILAGHETLDQYTDHFK--AAIFNLGY 94 >gi|322391712|ref|ZP_08065179.1| rRNA methylase [Streptococcus peroris ATCC 700780] gi|321145422|gb|EFX40816.1| rRNA methylase [Streptococcus peroris ATCC 700780] Length = 185 Score = 42.9 bits (100), Expect = 0.072, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 32/87 (36%), Gaps = 5/87 (5%) Query: 30 ALLN--PAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQFS 86 L +++DAT G G + ++ V A D A+ + +++ Sbjct: 10 DFLAEIINKEDIVVDATMGNGYDTLFLARLAKQVYAFDIQEQALEKTSQRLQEAGLTNAE 69 Query: 87 LFQATFSQLQDYVPDKGVDGVVFDLGV 113 L + +V + V +F+LG Sbjct: 70 LILQGHETVDQFVGE--VKAAIFNLGY 94 >gi|152998580|ref|YP_001364261.1| sun protein [Shewanella baltica OS185] gi|151363198|gb|ABS06198.1| sun protein [Shewanella baltica OS185] Length = 428 Score = 42.9 bits (100), Expect = 0.072, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 2/86 (2%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88 LL P ++ILDA GG S ++ ++A+D D + Q+ + + L Sbjct: 235 LLAPQANELILDACAAPGGKSCHLLELEPSIKLVAVDFDAKRLERVQQNLDRLSLKAELI 294 Query: 89 QATFSQLQDYVPDKGVDGVVFDLGVS 114 + + + D ++ D S Sbjct: 295 HGDAANIDSWWQGGQFDRILLDAPCS 320 >gi|126172286|ref|YP_001048435.1| sun protein [Shewanella baltica OS155] gi|125995491|gb|ABN59566.1| sun protein [Shewanella baltica OS155] Length = 428 Score = 42.9 bits (100), Expect = 0.072, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 2/86 (2%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88 LL P ++ILDA GG S ++ ++A+D D + Q+ + + L Sbjct: 235 LLAPQANELILDACAAPGGKSCHLLELEPSIKLVAVDFDAKRLERVQQNLDRLSLKAELI 294 Query: 89 QATFSQLQDYVPDKGVDGVVFDLGVS 114 + + + D ++ D S Sbjct: 295 HGDAANIDSWWQGGQFDRILLDAPCS 320 >gi|88812777|ref|ZP_01128023.1| hypothetical protein NB231_08197 [Nitrococcus mobilis Nb-231] gi|88790015|gb|EAR21136.1| hypothetical protein NB231_08197 [Nitrococcus mobilis Nb-231] Length = 235 Score = 42.9 bits (100), Expect = 0.073, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 23/53 (43%) Query: 36 PGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLF 88 +I+D G G ++ + G V+ +D P + + + + E+F F Sbjct: 69 DDSLIVDVPCGTGRHAEVLLEQGHRVVGVDVSPAMLEVARRKLSRFGERFRTF 121 >gi|119719409|ref|YP_919904.1| Fmu (Sun) domain-containing protein [Thermofilum pendens Hrk 5] gi|119524529|gb|ABL77901.1| Fmu (Sun) domain protein [Thermofilum pendens Hrk 5] Length = 389 Score = 42.9 bits (100), Expect = 0.074, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 40/109 (36%), Gaps = 15/109 (13%) Query: 28 VIALLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84 + LL+P PG +LD GG ++ VIA+DR V E R Sbjct: 193 AVRLLDPQPGWTVLDMCAAPGGKTTHAAQLMGDHGEVIAVDRTKSKVDTIMEHARRLG-- 250 Query: 85 FSLFQA---TFSQLQDYVPDKGVDGVVFD-----LGVSSMQIDCGDRGF 125 + + +Y+ VD V+ D LGV +RGF Sbjct: 251 LKSVKGLVYDSRYISEYLDKDSVDAVIIDPPCTALGVRPKLWY--ERGF 297 >gi|302832722|ref|XP_002947925.1| hypothetical protein VOLCADRAFT_88325 [Volvox carteri f. nagariensis] gi|300266727|gb|EFJ50913.1| hypothetical protein VOLCADRAFT_88325 [Volvox carteri f. nagariensis] Length = 425 Score = 42.9 bits (100), Expect = 0.074, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 10/88 (11%) Query: 35 APGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDY-----KEQF 85 PG +DAT G G+ F +V D A+S +E + + + Sbjct: 20 QPGDTAVDATCGN-GHDTLFLAQAVGPRGHVHGFDIQDAAISATRERVEAHLTASSRPTI 78 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGV 113 +L S L++ V F+LG Sbjct: 79 TLHHTCHSGLRELCGSGVARVVAFNLGY 106 >gi|116513225|ref|YP_812132.1| hypothetical protein LACR_2602 [Lactococcus lactis subsp. cremoris SK11] gi|116108879|gb|ABJ74019.1| SAM-dependent methyltransferase [Lactococcus lactis subsp. cremoris SK11] Length = 211 Score = 42.9 bits (100), Expect = 0.074, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 31/67 (46%), Gaps = 5/67 (7%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83 +L+ +I + V++DAT G G + ++G+ V A D A+ ++ + + Sbjct: 11 MLKDIINV-----DDVVVDATMGNGYDTLFLAELGAKVYAFDVQEAALEATEKRLENKAI 65 Query: 84 QFSLFQA 90 + + + Sbjct: 66 KTQIMKT 72 >gi|283471027|emb|CAQ50238.1| conserved protein YtqB [Staphylococcus aureus subsp. aureus ST398] Length = 187 Score = 42.9 bits (100), Expect = 0.075, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 37/85 (43%), Gaps = 6/85 (7%) Query: 34 PAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91 P +++DAT G G + + +V D A+ ++ ++D+ SL + Sbjct: 18 ITPESIVVDATCGNGNDTLFLAEQVPEGHVYGFDIQDLALENTRDKVKDF-NYVSLIKDG 76 Query: 92 FSQLQDYVPD---KGVDGVVFDLGV 113 ++ ++ D +D +F+LG Sbjct: 77 HENIEHHINDAHKGHIDAAIFNLGY 101 >gi|156932266|ref|YP_001436182.1| 16S rRNA methyltransferase B [Cronobacter sakazakii ATCC BAA-894] gi|224493253|sp|A7MPE7|RSMB_ENTS8 RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|156530520|gb|ABU75346.1| hypothetical protein ESA_00037 [Cronobacter sakazakii ATCC BAA-894] Length = 429 Score = 42.9 bits (100), Expect = 0.075, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85 + LL P G+ ILD GG + + +V+A+D D +S E ++ K + Sbjct: 238 CVELLAPQNGETILDLCAAPGGKTTHILEAAPQASVMAVDVDAQRISRVYENLKRLKMKA 297 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + + + D ++ D S Sbjct: 298 DVKVGDGRFPSTWCGETQFDRILLDAPCS 326 >gi|326434165|gb|EGD79735.1| hypothetical protein PTSG_13091 [Salpingoeca sp. ATCC 50818] Length = 441 Score = 42.9 bits (100), Expect = 0.076, Method: Composition-based stats. Identities = 14/38 (36%), Positives = 23/38 (60%) Query: 214 FQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251 QALR+ VN+E+ +L L + ++ GG + V+SF Sbjct: 1 MQALRVCVNDELVDLESALTTIAPRVRIGGRIGVLSFQ 38 Score = 39.0 bits (90), Expect = 1.1, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 29/65 (44%), Gaps = 2/65 (3%) Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313 ED V++ + + ++ + ++ + KK P +++ N RSRSA+L+ Sbjct: 379 ED--VRRRLRAAEDALRQMQPPRWTLPPELEYRCVWKKEAGPAGKELRRNPRSRSARLQM 436 Query: 314 GMRTV 318 R Sbjct: 437 YERIR 441 >gi|322387483|ref|ZP_08061093.1| rRNA methylase [Streptococcus infantis ATCC 700779] gi|321142012|gb|EFX37507.1| rRNA methylase [Streptococcus infantis ATCC 700779] Length = 185 Score = 42.9 bits (100), Expect = 0.076, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 33/88 (37%), Gaps = 7/88 (7%) Query: 30 ALLN--PAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQF 85 L V++DAT G G+ + K+ V A D A+ + +++ Sbjct: 10 DFLAQVITKDDVVVDATMGN-GHDTLFLAKLAKQVYAFDIQEQALQKTSKRIQEAGLTNV 68 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGV 113 L + +V + V +F+LG Sbjct: 69 DLILQGHETVDQFVTE--VKAAIFNLGY 94 >gi|326791105|ref|YP_004308926.1| rRNA methylase [Clostridium lentocellum DSM 5427] gi|326541869|gb|ADZ83728.1| rRNA methylase [Clostridium lentocellum DSM 5427] Length = 184 Score = 42.9 bits (100), Expect = 0.077, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 5/83 (6%) Query: 35 APGKVILDATFGAGGY-SRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQA 90 G + +DAT G G+ + C++ V+A D AV+ + +++ + ++ Sbjct: 18 KAGDLCIDATAGR-GHDTVFLCELVGDTGRVLAFDIQEEAVNSTKFLLKEKGLKAEVYLE 76 Query: 91 TFSQLQDYVPDKGVDGVVFDLGV 113 + + + YV + VDG+VF+ G Sbjct: 77 SHTHMDHYVKPETVDGIVFNFGY 99 >gi|119717022|ref|YP_923987.1| methyltransferase type 11 [Nocardioides sp. JS614] gi|119537683|gb|ABL82300.1| Methyltransferase type 11 [Nocardioides sp. JS614] Length = 249 Score = 42.9 bits (100), Expect = 0.077, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 30/68 (44%) Query: 30 ALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQ 89 L PG+ +LD G G ++ + G++V+A D D ++ E KE + + Sbjct: 7 DRLGLRPGERVLDMGAGGGRHAFEMYRRGADVVAFDMDADELAGVLEIFGAMKENGEVPE 66 Query: 90 ATFSQLQD 97 + ++ Sbjct: 67 GANADIKQ 74 >gi|322377325|ref|ZP_08051816.1| SAM-dependent methyltransferase, MraW methylase family [Streptococcus sp. M334] gi|321281525|gb|EFX58534.1| SAM-dependent methyltransferase, MraW methylase family [Streptococcus sp. M334] Length = 187 Score = 42.9 bits (100), Expect = 0.078, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 10/91 (10%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82 L +V+ +++DAT G G+ + K+ V A D A+ QE + Sbjct: 14 LAEVV-----TQDDIVVDATMGN-GHDTLFLAKLAKKVYAFDIQEQALEKTQERLNQAGM 67 Query: 83 EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 L L +V + G+ F+LG Sbjct: 68 TNAQLILQGHETLDQFVTEAKA-GI-FNLGY 96 >gi|306824940|ref|ZP_07458283.1| rRNA methylase [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432767|gb|EFM35740.1| rRNA methylase [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 185 Score = 42.9 bits (100), Expect = 0.080, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 10/91 (10%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82 L +V+ +++DAT G G+ + K+ V A D A+ QE + Sbjct: 12 LAEVV----TKED-IVVDATMGN-GHDTLFLAKLAKRVYAFDIQEQALEKTQERLDQAGM 65 Query: 83 EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 L L +V + G+ F+LG Sbjct: 66 TNAQLILQGHETLDQFVTEAKA-GI-FNLGY 94 >gi|116333701|ref|YP_795228.1| SAM-dependent methyltransferase [Lactobacillus brevis ATCC 367] gi|116099048|gb|ABJ64197.1| SAM-dependent methyltransferase [Lactobacillus brevis ATCC 367] Length = 188 Score = 42.9 bits (100), Expect = 0.080, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 13/100 (13%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQE 76 H LL++ + PG ++DAT G G + +VI D A+ Q+ Sbjct: 11 HT--LLKECV-----GPGATVIDATVGKGNDTVFLANLVGKSGHVIGFDIQQAALDATQQ 63 Query: 77 --TMRDYKEQFSLFQATFSQLQDYV-PDKGVDGVVFDLGV 113 T+ +Q +L Q+ Y+ P+ V +F+LG Sbjct: 64 QLTLTGLSQQVTLHAVGHEQVAAYLDPETPVAAAIFNLGY 103 >gi|269140542|ref|YP_003297243.1| 16S rRNA methyltransferase B [Edwardsiella tarda EIB202] gi|267986203|gb|ACY86032.1| 16S rRNA methyltransferase B [Edwardsiella tarda EIB202] gi|304560327|gb|ADM42991.1| Ribosomal RNA small subunit methyltransferase B [Edwardsiella tarda FL6-60] Length = 430 Score = 42.9 bits (100), Expect = 0.082, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 37/89 (41%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85 + LL+P G+ ILD GG + + +V+A+D D + +E ++ ++ Sbjct: 239 SVDLLDPQDGEQILDLCCAPGGKTTHILEAAPKAHVLAVDVDESRLKRVRENLQRLQQHA 298 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + ++ + D ++ D S Sbjct: 299 EIRCGDGRTPDEWARGRQFDRILLDAPCS 327 >gi|123444066|ref|YP_001008036.1| 16S rRNA methyltransferase B [Yersinia enterocolitica subsp. enterocolitica 8081] gi|224493291|sp|A1JRZ3|RSMB_YERE8 RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|122091027|emb|CAL13910.1| conserved hypothetical protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 429 Score = 42.9 bits (100), Expect = 0.083, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 38/89 (42%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85 + LL+P G+ ILD GG + + +V+A+D D +S +E ++ + Sbjct: 238 CVDLLDPQDGEQILDLCAAPGGKTTHILEAAPKVHVLAVDIDEQRLSRVKENLQRLRLHA 297 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + ++ D+ D ++ D S Sbjct: 298 DVRVGDGRTPDEWCGDQQFDRILLDAPCS 326 >gi|240141547|ref|YP_002966027.1| putative protein-L-isoaspartate O-methyltransferase [Methylobacterium extorquens AM1] gi|240011524|gb|ACS42750.1| putative protein-L-isoaspartate O-methyltransferase [Methylobacterium extorquens AM1] Length = 216 Score = 42.5 bits (99), Expect = 0.084, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 7/71 (9%) Query: 22 PVLLEKVIALLNPAPGKVILDATFGAG-GYSRSFCK-MGSNVIALDRDPFAVSCGQETMR 79 P+LL ++I L PG LD G G GY + + +G+ V+AL+ DP + +E + Sbjct: 68 PMLLARLIQALKIRPGTRALD--VGTGYGYGAAVLRQLGAEVVALESDPDLIGAARERL- 124 Query: 80 DYKEQFSLFQA 90 + +L Q Sbjct: 125 --GDTVNLVQG 133 >gi|212709010|ref|ZP_03317138.1| hypothetical protein PROVALCAL_00042 [Providencia alcalifaciens DSM 30120] gi|212688376|gb|EEB47904.1| hypothetical protein PROVALCAL_00042 [Providencia alcalifaciens DSM 30120] Length = 428 Score = 42.5 bits (99), Expect = 0.084, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 43/89 (48%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85 LL+P G+ ILD GG + ++ +V+A+D D + +E ++ K+ Sbjct: 238 CAELLSPINGENILDLCAAPGGKTTHILELAPKAHVLAVDIDDARLKRVKENLQRLKQHA 297 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 ++ Q ++ +++ D+ D ++ D S Sbjct: 298 TVIQGDGTKPEEWAKDQLFDRILLDAPCS 326 >gi|52842799|ref|YP_096598.1| rRNA methyltransferase (SUN protein) [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629910|gb|AAU28651.1| rRNA methyltransferase (SUN protein) [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 427 Score = 42.5 bits (99), Expect = 0.084, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 37/87 (42%), Gaps = 3/87 (3%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCGQETMRDYKEQFSL 87 LL+ PG+ +LDA GG + + + +ALD DP + ++ + Q ++ Sbjct: 232 LLSLKPGQRVLDACCAPGGKTCHILEKEPGLASCVALDLDPQRLQRVRDNLNRLDLQATV 291 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGVS 114 Q + + + D ++ D S Sbjct: 292 VQGDVLEPRSWWDGHPFDRILLDAPCS 318 >gi|189054471|dbj|BAG37244.1| unnamed protein product [Homo sapiens] Length = 853 Score = 42.5 bits (99), Expect = 0.087, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 2/68 (2%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96 V++DA G GG + F G VIA+D DP ++ + Y ++ F L Sbjct: 693 VVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA 752 Query: 97 DYVPDKGV 104 ++ V Sbjct: 753 SFLKADVV 760 >gi|151301096|ref|NP_079107.6| trimethylguanosine synthase [Homo sapiens] gi|317373500|sp|Q96RS0|TGS1_HUMAN RecName: Full=Trimethylguanosine synthase; AltName: Full=CLL-associated antigen KW-2; AltName: Full=Cap-specific guanine-N2 methyltransferase; AltName: Full=Hepatocellular carcinoma-associated antigen 137; AltName: Full=Nuclear receptor coactivator 6-interacting protein; AltName: Full=PRIP-interacting protein with methyltransferase motif; Short=PIMT; Short=PIPMT gi|182887849|gb|AAI60105.1| Trimethylguanosine synthase homolog (S. cerevisiae) [synthetic construct] Length = 853 Score = 42.5 bits (99), Expect = 0.087, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 2/68 (2%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96 V++DA G GG + F G VIA+D DP ++ + Y ++ F L Sbjct: 693 VVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA 752 Query: 97 DYVPDKGV 104 ++ V Sbjct: 753 SFLKADVV 760 >gi|119607169|gb|EAW86763.1| nuclear receptor coactivator 6 interacting protein, isoform CRA_c [Homo sapiens] Length = 793 Score = 42.5 bits (99), Expect = 0.087, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 2/68 (2%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96 V++DA G GG + F G VIA+D DP ++ + Y ++ F L Sbjct: 693 VVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA 752 Query: 97 DYVPDKGV 104 ++ V Sbjct: 753 SFLKADVV 760 >gi|15077008|gb|AAK83025.1|AF286340_1 hepatocellular carcinoma-associated antigen 137 [Homo sapiens] Length = 853 Score = 42.5 bits (99), Expect = 0.087, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 2/68 (2%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96 V++DA G GG + F G VIA+D DP ++ + Y ++ F L Sbjct: 693 VVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA 752 Query: 97 DYVPDKGV 104 ++ V Sbjct: 753 SFLKADVV 760 >gi|14278850|gb|AAK27730.1| PRIP-interacting protein PIPMT [Homo sapiens] Length = 852 Score = 42.5 bits (99), Expect = 0.087, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 2/68 (2%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96 V++DA G GG + F G VIA+D DP ++ + Y ++ F L Sbjct: 692 VVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA 751 Query: 97 DYVPDKGV 104 ++ V Sbjct: 752 SFLKADVV 759 >gi|19851925|gb|AAL99922.1|AF432215_1 CLL-associated antigen KW-2 [Homo sapiens] Length = 853 Score = 42.5 bits (99), Expect = 0.087, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 2/68 (2%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96 V++DA G GG + F G VIA+D DP ++ + Y ++ F L Sbjct: 693 VVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA 752 Query: 97 DYVPDKGV 104 ++ V Sbjct: 753 SFLKADVV 760 >gi|119607168|gb|EAW86762.1| nuclear receptor coactivator 6 interacting protein, isoform CRA_b [Homo sapiens] Length = 853 Score = 42.5 bits (99), Expect = 0.087, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 2/68 (2%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96 V++DA G GG + F G VIA+D DP ++ + Y ++ F L Sbjct: 693 VVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA 752 Query: 97 DYVPDKGV 104 ++ V Sbjct: 753 SFLKADVV 760 >gi|168218096|ref|ZP_02643721.1| conserved hypothetical protein [Clostridium perfringens NCTC 8239] gi|182379886|gb|EDT77365.1| conserved hypothetical protein [Clostridium perfringens NCTC 8239] Length = 183 Score = 42.5 bits (99), Expect = 0.088, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 5/76 (6%) Query: 39 VILDATFGAGGYSRSFC-KMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD 97 + +DAT G G+ F ++ V A D AV+ + KE + + + Sbjct: 25 IAIDATLGN-GHDCDFLSELFKKVYAFDIQEEAVNSYK---SKNKENVEVILDSHENFET 80 Query: 98 YVPDKGVDGVVFDLGV 113 Y+ ++ VD +V++LG Sbjct: 81 YIKEENVDCIVYNLGY 96 >gi|168207497|ref|ZP_02633502.1| conserved hypothetical protein [Clostridium perfringens E str. JGS1987] gi|170661178|gb|EDT13861.1| conserved hypothetical protein [Clostridium perfringens E str. JGS1987] Length = 183 Score = 42.5 bits (99), Expect = 0.088, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 5/76 (6%) Query: 39 VILDATFGAGGYSRSFC-KMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD 97 + +DAT G G+ F ++ V A D AV+ + KE + + + Sbjct: 25 IAIDATLGN-GHDCDFLSELFKKVYAFDIQEEAVNSYK---SKNKENVEVILDSHENFET 80 Query: 98 YVPDKGVDGVVFDLGV 113 Y+ ++ VD +V++LG Sbjct: 81 YIKEENVDCIVYNLGY 96 >gi|110800429|ref|YP_695783.1| hypothetical protein CPF_1337 [Clostridium perfringens ATCC 13124] gi|168212064|ref|ZP_02637689.1| conserved hypothetical protein [Clostridium perfringens B str. ATCC 3626] gi|110675076|gb|ABG84063.1| conserved hypothetical protein [Clostridium perfringens ATCC 13124] gi|170710019|gb|EDT22201.1| conserved hypothetical protein [Clostridium perfringens B str. ATCC 3626] Length = 183 Score = 42.5 bits (99), Expect = 0.088, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 5/76 (6%) Query: 39 VILDATFGAGGYSRSFC-KMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD 97 + +DAT G G+ F ++ V A D AV+ + KE + + + Sbjct: 25 IAIDATLGN-GHDCDFLSELFKKVYAFDIQEEAVNSYK---SKNKENVEVILDSHENFET 80 Query: 98 YVPDKGVDGVVFDLGV 113 Y+ ++ VD +V++LG Sbjct: 81 YIKEENVDCIVYNLGY 96 >gi|18310063|ref|NP_561997.1| hypothetical protein CPE1081 [Clostridium perfringens str. 13] gi|18144742|dbj|BAB80787.1| conserved hypothetical protein [Clostridium perfringens str. 13] Length = 188 Score = 42.5 bits (99), Expect = 0.088, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 5/76 (6%) Query: 39 VILDATFGAGGYSRSFC-KMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD 97 + +DAT G G+ F ++ V A D AV+ + KE + + + Sbjct: 30 IAIDATLGN-GHDCDFLSELFKKVYAFDIQEEAVNSYK---SKNKENVEVILDSHENFET 85 Query: 98 YVPDKGVDGVVFDLGV 113 Y+ ++ VD +V++LG Sbjct: 86 YIKEENVDCIVYNLGY 101 >gi|308048558|ref|YP_003912124.1| RNA methyltransferase, TrmA family [Ferrimonas balearica DSM 9799] gi|307630748|gb|ADN75050.1| RNA methyltransferase, TrmA family [Ferrimonas balearica DSM 9799] Length = 447 Score = 42.5 bits (99), Expect = 0.088, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 2/89 (2%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82 ++ + I L P PG+ LD G G ++ + + +I ++ P V + + Sbjct: 284 MISQAIEWLQPQPGEKGLDLFCGGGNFTLALAGQSAEIIGVEGVPAMVERARARAAELGL 343 Query: 83 EQFSLFQATF-SQLQDYVPDKGVDGVVFD 110 EQ A + K VD V+ D Sbjct: 344 EQLRFEYADLNGEAPKAQWLKDVDWVLLD 372 >gi|149910330|ref|ZP_01898973.1| Putative Sun protein [Moritella sp. PE36] gi|149806578|gb|EDM66546.1| Putative Sun protein [Moritella sp. PE36] Length = 431 Score = 42.5 bits (99), Expect = 0.088, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 3/88 (3%) Query: 30 ALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDYKEQFS 86 L+ PG+++LDA GG + + +++A+D D +S QE + + Sbjct: 237 QFLDAQPGELVLDACAAPGGKTAHILERQPALKHLVAVDFDATRLSRVQENLTRMQLDAE 296 Query: 87 LFQATFSQLQDYVPDKGVDGVVFDLGVS 114 L S+ +D+ D ++ D S Sbjct: 297 LIHGDASKPEDWWQGDKFDRILLDAPCS 324 >gi|317494309|ref|ZP_07952723.1| ribosomal RNA small subunit methyltransferase B [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917559|gb|EFV38904.1| ribosomal RNA small subunit methyltransferase B [Enterobacteriaceae bacterium 9_2_54FAA] Length = 430 Score = 42.5 bits (99), Expect = 0.089, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85 + LL+P G+ ILD GG + + +V+A+D D + +E + ++Q Sbjct: 239 CVDLLDPQNGEQILDLCCAPGGKTTHILEAAPKAHVLAVDVDENRLRRVKENLHRLQQQA 298 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + + + DK D ++ D S Sbjct: 299 EVKCGDGRYPEKWCGDKQFDRILLDAPCS 327 >gi|238021729|ref|ZP_04602155.1| hypothetical protein GCWU000324_01632 [Kingella oralis ATCC 51147] gi|237866343|gb|EEP67385.1| hypothetical protein GCWU000324_01632 [Kingella oralis ATCC 51147] Length = 418 Score = 42.5 bits (99), Expect = 0.089, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 35/88 (39%), Gaps = 13/88 (14%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQ- 89 LLNP G+ +LDA GG + ++ D D A+ + ++ ++ + Sbjct: 239 LLNPQHGERVLDACAAPGGKTGHILELA------DCDLTALDIAPQRLQRVRDNLARLHF 292 Query: 90 ------ATFSQLQDYVPDKGVDGVVFDL 111 A L D+ + D ++ D+ Sbjct: 293 QAALHCADAQNLSDWYNGEPFDAILADI 320 >gi|210622939|ref|ZP_03293444.1| hypothetical protein CLOHIR_01392 [Clostridium hiranonis DSM 13275] gi|210153905|gb|EEA84911.1| hypothetical protein CLOHIR_01392 [Clostridium hiranonis DSM 13275] Length = 193 Score = 42.5 bits (99), Expect = 0.089, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 6/85 (7%) Query: 34 PAPGKVILDATFGAGGYS---RSFCKMGSNVIALDRDPFAVSCGQETMR--DYKEQFSLF 88 G V +DAT G G + V A D A+ ++ ++ +++++ L Sbjct: 22 IGEGDVCIDATMGNGYDTVFLAEIVGENGKVYAFDVQEEAIKSTEKKVKKLEFEDRVELI 81 Query: 89 QATFSQLQDYVPDKGVDGVVFDLGV 113 + +YV D + VF+LG Sbjct: 82 LDGHENISNYVKD-SIKCAVFNLGY 105 >gi|150399288|ref|YP_001323055.1| precorrin-6Y C5,15-methyltransferase subunit CbiT [Methanococcus vannielii SB] gi|166225723|sp|A6UPM1|CBIT_METVS RecName: Full=Probable cobalt-precorrin-6Y C(15)-methyltransferase [decarboxylating] gi|150011991|gb|ABR54443.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit [Methanococcus vannielii SB] Length = 180 Score = 42.5 bits (99), Expect = 0.089, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 6/89 (6%) Query: 21 VPVLLEKV----IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQE 76 VP+ E++ + LN P +ILD G+GG + K V A+D A+ + Sbjct: 13 VPITKEEIRAISVEKLNICPEDIILDIGCGSGGMTVEISKRCKFVYAVDGSKDAIDTTLK 72 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVD 105 M + + F +D + + V+ Sbjct: 73 NMDKF--NVKNCEVYFGDAKDLISNFKVN 99 >gi|312134220|ref|YP_004001558.1| short-chain dehydrogenase/reductase sdr [Caldicellulosiruptor owensensis OL] gi|311774271|gb|ADQ03758.1| short-chain dehydrogenase/reductase SDR [Caldicellulosiruptor owensensis OL] Length = 264 Score = 42.5 bits (99), Expect = 0.090, Method: Composition-based stats. Identities = 37/231 (16%), Positives = 80/231 (34%), Gaps = 48/231 (20%) Query: 51 SRSFCKMGSNVIALDRDPFAVSCGQETMRD-YKEQFSLFQATFSQLQDYVPDKGVDGVVF 109 + SF + G+ V A+D+D A+ + D +K++ + F+ + ++ V+ V Sbjct: 31 ALSFLENGARVFAIDKDREAIEDASQDFFDKFKDRITFFECDLADAKE------VELVCQ 84 Query: 110 DLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQ- 168 +G S+ G +D+ ++ + IS+ + + +V + ++ + Sbjct: 85 KIGKSA---------------GNVDVLVNNAAISSIKWIEERSVDEWDEVINVNLRAPYL 129 Query: 169 -ASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRI----HPATRSFQALRIFVNN 223 + + + +T+ L S Y + I H S + +I VN Sbjct: 130 MVKFLLPYLNEGASIVNIASTRALMSEPNTEPYSASKGGILALTHSLAISLSSRKIRVNA 189 Query: 224 -EIEELAQG------------LRSAEKALKAGGLLIV-------VSFHSLE 254 + LR + G + V + F S E Sbjct: 190 ISPGWIETSKYRKRKYRREPELREVDHLQHPAGRVGVPEDIANAILFLSSE 240 >gi|300709747|ref|YP_003735561.1| Methyltransferase type 11 [Halalkalicoccus jeotgali B3] gi|299123430|gb|ADJ13769.1| Methyltransferase type 11 [Halalkalicoccus jeotgali B3] Length = 206 Score = 42.5 bits (99), Expect = 0.090, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 24/60 (40%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83 + + +++L+ P +LD G G + + +V LD+ P + + + Sbjct: 33 MRGQALSMLDIDPDDRVLDVGCGTGFATEGLLEHAEDVHGLDQSPHQLEKAWAKLGKHDP 92 >gi|146319324|ref|YP_001199036.1| SAM-dependent methyltransferase [Streptococcus suis 05ZYH33] gi|146321528|ref|YP_001201239.1| SAM-dependent methyltransferase [Streptococcus suis 98HAH33] gi|223934023|ref|ZP_03625977.1| putative rRNA methylase [Streptococcus suis 89/1591] gi|253752355|ref|YP_003025496.1| rRNA methylase [Streptococcus suis SC84] gi|253754181|ref|YP_003027322.1| rRNA methylase [Streptococcus suis P1/7] gi|253756115|ref|YP_003029255.1| rRNA methylase [Streptococcus suis BM407] gi|302024304|ref|ZP_07249515.1| rRNA methylase [Streptococcus suis 05HAS68] gi|330833292|ref|YP_004402117.1| SAM-dependent methyltransferase [Streptococcus suis ST3] gi|145690130|gb|ABP90636.1| SAM-dependent methyltransferase [Streptococcus suis 05ZYH33] gi|145692334|gb|ABP92839.1| SAM-dependent methyltransferase [Streptococcus suis 98HAH33] gi|223897312|gb|EEF63719.1| putative rRNA methylase [Streptococcus suis 89/1591] gi|251816644|emb|CAZ52285.1| putative rRNA methylase [Streptococcus suis SC84] gi|251818579|emb|CAZ56413.1| putative rRNA methylase [Streptococcus suis BM407] gi|251820427|emb|CAR47091.1| putative rRNA methylase [Streptococcus suis P1/7] gi|292558957|gb|ADE31958.1| Putative rRNA methylase [Streptococcus suis GZ1] gi|319758759|gb|ADV70701.1| SAM-dependent methyltransferase [Streptococcus suis JS14] gi|329307515|gb|AEB81931.1| SAM-dependent methyltransferase [Streptococcus suis ST3] Length = 184 Score = 42.5 bits (99), Expect = 0.091, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 5/75 (6%) Query: 41 LDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQLQDY 98 +DAT G G+ + + V+A D A++ E + L L Y Sbjct: 23 VDATMGN-GHDTLFLAQRAGKVVAFDIQEQALTTTAEKLEKAGLTNAQLVLTGHENLDQY 81 Query: 99 VPDKGVDGVVFDLGV 113 V + +F+LG Sbjct: 82 VDECK--AAIFNLGY 94 >gi|223983685|ref|ZP_03633861.1| hypothetical protein HOLDEFILI_01142 [Holdemania filiformis DSM 12042] gi|225572812|ref|ZP_03781567.1| hypothetical protein RUMHYD_01003 [Blautia hydrogenotrophica DSM 10507] gi|227824269|ref|ZP_03989101.1| conserved hypothetical protein [Acidaminococcus sp. D21] gi|229827136|ref|ZP_04453205.1| hypothetical protein GCWU000182_02521 [Abiotrophia defectiva ATCC 49176] gi|291459465|ref|ZP_06598855.1| methyltransferase domain protein [Oribacterium sp. oral taxon 078 str. F0262] gi|223964382|gb|EEF68718.1| hypothetical protein HOLDEFILI_01142 [Holdemania filiformis DSM 12042] gi|225039869|gb|EEG50115.1| hypothetical protein RUMHYD_01003 [Blautia hydrogenotrophica DSM 10507] gi|226904768|gb|EEH90686.1| conserved hypothetical protein [Acidaminococcus sp. D21] gi|229788754|gb|EEP24868.1| hypothetical protein GCWU000182_02521 [Abiotrophia defectiva ATCC 49176] gi|291417922|gb|EFE91641.1| methyltransferase domain protein [Oribacterium sp. oral taxon 078 str. F0262] Length = 255 Score = 42.5 bits (99), Expect = 0.092, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 1/86 (1%) Query: 3 SKSCKTMSSAIHHTIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV 61 K+ + A+ + H V+ KV LL+P P ILD G G YS + G++V Sbjct: 32 EKNAQFWDDAMGDESNEFHREVVRPKVTELLSPDPSDYILDIACGNGNYSSYLAQRGASV 91 Query: 62 IALDRDPFAVSCGQETMRDYKEQFSL 87 +A D + + Y +Q Sbjct: 92 VAFDYSKKMIELAKRRRSQYAKQIEF 117 >gi|331084540|ref|ZP_08333640.1| hypothetical protein HMPREF0992_02564 [Lachnospiraceae bacterium 6_1_63FAA] gi|330401090|gb|EGG80684.1| hypothetical protein HMPREF0992_02564 [Lachnospiraceae bacterium 6_1_63FAA] Length = 198 Score = 42.5 bits (99), Expect = 0.093, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 1/86 (1%) Query: 3 SKSCKTMSSAIHHTIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV 61 K+ + A+ + H V+ KV LL+P P ILD G G YS + G++V Sbjct: 32 EKNAQFWDDAMGDESNEFHREVVRPKVTELLSPDPSDYILDIACGNGNYSSYLAQRGASV 91 Query: 62 IALDRDPFAVSCGQETMRDYKEQFSL 87 +A D + + Y +Q Sbjct: 92 VAFDYSKKMIELAKRRRSQYAKQIEF 117 >gi|124027398|ref|YP_001012718.1| tRNA and rRNA cytosine-C5-methylase [Hyperthermus butylicus DSM 5456] gi|123978092|gb|ABM80373.1| tRNA and rRNA cytosine-C5-methylase [Hyperthermus butylicus DSM 5456] Length = 472 Score = 42.5 bits (99), Expect = 0.093, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 4/83 (4%) Query: 32 LNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQFSL 87 L+P PG ++D GG + K + A D D + + +R + Sbjct: 274 LDPKPGMTVVDLAAAPGGKTSHIAELMKNHGRIYAFDIDRVRIKRMRMILRRMGITIVRI 333 Query: 88 FQATFSQLQDYVPDKGVDGVVFD 110 F+ + + ++ D V+ D Sbjct: 334 FEKDAREAPRILGEEIADRVLLD 356 >gi|313637570|gb|EFS02980.1| methylase protein [Listeria seeligeri FSL S4-171] Length = 191 Score = 42.5 bits (99), Expect = 0.095, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 8/86 (9%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK--EQFSL 87 PG ++DAT G G+ +V+ D A++ + + + Q L Sbjct: 18 VRPGDYVVDATCGN-GHDTLLLAELVGVNGHVLGFDIQQVAIAATKTRLENAAVSSQVEL 76 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGV 113 A+ + + +Y V +F+LG Sbjct: 77 ICASHATIPEY-ATTPVRAAIFNLGY 101 >gi|293365734|ref|ZP_06612443.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037] gi|291316102|gb|EFE56546.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037] Length = 185 Score = 42.5 bits (99), Expect = 0.095, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 10/91 (10%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82 L +V+ +++DAT G G+ + K+ V A D A+ QE + Sbjct: 12 LAEVV----TKED-IVVDATMGN-GHDTLFLAKLAKKVYAFDIQEKALEKTQERLDQAGM 65 Query: 83 EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 L +L +V + G+ F+LG Sbjct: 66 TNAQLILQGHEKLDQFVTEAKA-GI-FNLGY 94 >gi|289434949|ref|YP_003464821.1| methylase protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171193|emb|CBH27735.1| methylase protein [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 191 Score = 42.5 bits (99), Expect = 0.095, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 8/86 (9%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK--EQFSL 87 PG ++DAT G G+ +V+ D A++ + + + Q L Sbjct: 18 VRPGDYVVDATCGN-GHDTLLLAELVGVNGHVLGFDIQQVAIAATKTRLENAAVSSQVEL 76 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGV 113 A+ + + +Y V +F+LG Sbjct: 77 ICASHATIPEY-ATTPVRAAIFNLGY 101 >gi|46852026|gb|AAT02709.1| hypothetical rhabdomyosarcoma antigen MU-RMS-40.15 [Homo sapiens] Length = 578 Score = 42.5 bits (99), Expect = 0.095, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 2/68 (2%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96 V++DA G GG + F G VIA+D DP ++ + Y ++ F L Sbjct: 418 VVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA 477 Query: 97 DYVPDKGV 104 ++ V Sbjct: 478 SFLKADVV 485 >gi|319892816|ref|YP_004149691.1| SAM-dependent methyltransferase, MraW methylase family [Staphylococcus pseudintermedius HKU10-03] gi|317162512|gb|ADV06055.1| SAM-dependent methyltransferase, MraW methylase family [Staphylococcus pseudintermedius HKU10-03] gi|323464152|gb|ADX76305.1| rRNA methylase, putative [Staphylococcus pseudintermedius ED99] Length = 187 Score = 42.5 bits (99), Expect = 0.095, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 8/81 (9%) Query: 39 VILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95 V++DAT G G+ F +V D A+ ++ + DY SLF + Sbjct: 23 VVIDATCGN-GHDTKFLADLVPHGHVYGCDIQQEAIENTKQRVHDY-NNVSLFHTGHEWI 80 Query: 96 QDYVPDKG---VDGVVFDLGV 113 Y+ D+ V +F+LG Sbjct: 81 TQYIRDEHLTQVHAAIFNLGY 101 >gi|269140060|ref|YP_003296761.1| 23S rRNA 5-methyluridine methyltransferase [Edwardsiella tarda EIB202] gi|267985721|gb|ACY85550.1| 23S rRNA 5-methyluridine methyltransferase [Edwardsiella tarda EIB202] gi|304559888|gb|ADM42552.1| 23S rRNA (Uracil-5-) -methyltransferase RumA [Edwardsiella tarda FL6-60] Length = 420 Score = 42.5 bits (99), Expect = 0.095, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 36/90 (40%), Gaps = 3/90 (3%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82 ++E+ +A L+ + +LD G G ++ + V+ ++ P V+ Q R+ Sbjct: 260 MVEQALAWLDVRADERVLDLFCGMGNFTLPLARRAQRVVGVEGVPELVATAQNNARNNGL 319 Query: 83 EQFSLFQATFSQ--LQDYVPDKGVDGVVFD 110 F + + +G D ++ D Sbjct: 320 SNVEFFHQNLEEDVTRQAWAAQGFDKILLD 349 >gi|241913349|pdb|3GDH|A Chain A, Methyltransferase Domain Of Human Trimethylguanosine Synthase 1 (Tgs1) Bound To M7gtp And Adenosyl-Homocysteine (Active Form) gi|241913350|pdb|3GDH|B Chain B, Methyltransferase Domain Of Human Trimethylguanosine Synthase 1 (Tgs1) Bound To M7gtp And Adenosyl-Homocysteine (Active Form) gi|241913351|pdb|3GDH|C Chain C, Methyltransferase Domain Of Human Trimethylguanosine Synthase 1 (Tgs1) Bound To M7gtp And Adenosyl-Homocysteine (Active Form) Length = 241 Score = 42.5 bits (99), Expect = 0.095, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 2/68 (2%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96 V++DA G GG + F G VIA+D DP ++ + Y ++ F L Sbjct: 81 VVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA 140 Query: 97 DYVPDKGV 104 ++ V Sbjct: 141 SFLKADVV 148 >gi|241889241|ref|ZP_04776544.1| SAM-dependent methyltransferase [Gemella haemolysans ATCC 10379] gi|241864078|gb|EER68457.1| SAM-dependent methyltransferase [Gemella haemolysans ATCC 10379] Length = 189 Score = 42.5 bits (99), Expect = 0.095, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 9/93 (9%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYK 82 LL++VI V++DAT G G + K + V A D A+ + + + Sbjct: 11 LLKEVID-----KNSVVVDATAGNGNDTLFLAKTSAKKVYAFDIQELAIENTTRLIEEAE 65 Query: 83 --EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 ++ + + + Y+ D + VVF+LG Sbjct: 66 LTDKCEIVLDSHFEFDKYIDDT-IRAVVFNLGY 97 >gi|289167555|ref|YP_003445824.1| hypothetical protein smi_0709 [Streptococcus mitis B6] gi|288907122|emb|CBJ21956.1| conserved hypothetical protein [Streptococcus mitis B6] Length = 167 Score = 42.5 bits (99), Expect = 0.096, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 10/91 (10%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82 L +V+ +++DAT G G+ + K+ V A D A+ QE + Sbjct: 12 LAEVV-----TQDDIVVDATMGN-GHDTLFLAKLAKQVYAFDIQEQALEKTQERLNQAGM 65 Query: 83 EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 L L +V + G+ F+LG Sbjct: 66 TNAQLILQGHETLDQFVTEAKA-GI-FNLGY 94 >gi|284042473|ref|YP_003392813.1| methyltransferase type 11 [Conexibacter woesei DSM 14684] gi|283946694|gb|ADB49438.1| Methyltransferase type 11 [Conexibacter woesei DSM 14684] Length = 249 Score = 42.5 bits (99), Expect = 0.098, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 25/50 (50%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77 +I LL+ PG ++DA G G Y + + G +D P A++ ++ Sbjct: 43 MIELLDLRPGTTVVDAGCGFGRYCAALLEHGMEATGIDISPAAIAEAEKR 92 >gi|168214958|ref|ZP_02640583.1| conserved hypothetical protein [Clostridium perfringens CPE str. F4969] gi|170713598|gb|EDT25780.1| conserved hypothetical protein [Clostridium perfringens CPE str. F4969] Length = 183 Score = 42.5 bits (99), Expect = 0.098, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 5/76 (6%) Query: 39 VILDATFGAGGYSRSFC-KMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD 97 + +DAT G G+ F ++ V A D AV+ + KE + + + Sbjct: 25 IAIDATLGN-GHDCDFLSELFKKVYAFDIQEEAVNSYK---SKNKENIEVILDSHENFET 80 Query: 98 YVPDKGVDGVVFDLGV 113 Y+ ++ VD +V++LG Sbjct: 81 YIKEENVDCIVYNLGY 96 >gi|313887999|ref|ZP_07821677.1| putative rRNA methylase [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845954|gb|EFR33337.1| putative rRNA methylase [Peptoniphilus harei ACS-146-V-Sch2b] Length = 184 Score = 42.5 bits (99), Expect = 0.099, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 7/79 (8%) Query: 37 GKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETMRDYKEQFSLFQATFS 93 GK+ +DAT G G + K V D A+S + + Y + + F + + Sbjct: 21 GKIAVDATVGKGNDTLKLLKAVGKDGFVYGFDVQEEALSKARVLLAGY-DNYEFFLDSHA 79 Query: 94 QLQDYVPDKGVDGVVFDLG 112 + + D V+++LG Sbjct: 80 NIDRL---ESFDLVIYNLG 95 >gi|237806927|ref|YP_002891367.1| sun protein [Tolumonas auensis DSM 9187] gi|237499188|gb|ACQ91781.1| sun protein [Tolumonas auensis DSM 9187] Length = 433 Score = 42.5 bits (99), Expect = 0.10, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 3/87 (3%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDYKEQFSL 87 LL+P P ++ILDA GG + + ++A+D D +S E ++ + + +L Sbjct: 238 LLDPQPNELILDACAAPGGKTAHILERQPALKQLVAVDSDANRLSRVAENLQRIQLEATL 297 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGVS 114 S + + D ++ D S Sbjct: 298 INGDASHPEQWWQGPQFDRILLDAPCS 324 >gi|157822011|ref|NP_001101374.1| trimethylguanosine synthase [Rattus norvegicus] gi|143587061|sp|P85107|TGS1_RAT RecName: Full=Trimethylguanosine synthase; AltName: Full=Nuclear receptor coactivator 6-interacting protein; AltName: Full=PRIP-interacting protein with methyltransferase motif; Short=PIMT; Short=PIPMT gi|149060992|gb|EDM11602.1| nuclear receptor coactivator 6 interacting protein (predicted) [Rattus norvegicus] Length = 850 Score = 42.5 bits (99), Expect = 0.10, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 2/68 (2%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96 +I+DA G GG + F G VIA+D DP + + Y ++ F L Sbjct: 687 IIVDAFCGVGGNTIQFALTGKRVIAIDIDPVKIDLARNNAEVYGVADKIEFICGDFLLLA 746 Query: 97 DYVPDKGV 104 + V Sbjct: 747 PCLKADVV 754 >gi|77166463|ref|YP_344988.1| Fmu, rRNA SAM-dependent methyltransferase [Nitrosococcus oceani ATCC 19707] gi|76884777|gb|ABA59458.1| 16S rRNA m(5)C-967 methyltransferase [Nitrosococcus oceani ATCC 19707] Length = 403 Score = 42.5 bits (99), Expect = 0.10, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 3/88 (3%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCGQETMRDYKEQFSL 87 LL PG+ +LDA GG + ++ + IALD D + ++ + + + Sbjct: 210 LLALTPGQRVLDACAAPGGKTSHILELEPQLETLIALDLDATRLERLNSNLKRLQLKAEV 269 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGVSS 115 Q Q + D ++ D S Sbjct: 270 IQGNALQPDTWWDGIPFDRILLDAPCSG 297 >gi|321451313|gb|EFX63009.1| hypothetical protein DAPPUDRAFT_269241 [Daphnia pulex] Length = 253 Score = 42.5 bits (99), Expect = 0.10, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 2/68 (2%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96 +I+D GAGG S F VIA+D DP + + Y ++ F QL Sbjct: 91 LIVDVFCGAGGNSIQFAFKCERVIAIDIDPSKIELARHNASVYGVADRIEFIVGDFFQLA 150 Query: 97 DYVPDKGV 104 + V Sbjct: 151 PSLKADVV 158 >gi|326201088|ref|ZP_08190960.1| Methyltransferase type 11 [Clostridium papyrosolvens DSM 2782] gi|325988656|gb|EGD49480.1| Methyltransferase type 11 [Clostridium papyrosolvens DSM 2782] Length = 241 Score = 42.5 bits (99), Expect = 0.10, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 5/100 (5%) Query: 26 EKVIALL---NPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82 ++ + L P K +LD G GGYS + G NV A+D D V + ++ Sbjct: 19 KEQLDFLKEIAGKPPKSVLDIACGTGGYSLELDRRGYNVTAVDLDKEMVRRLEVKAKENN 78 Query: 83 EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGD 122 + Q +LQ+ + D D +VF +G S + ++ + Sbjct: 79 QSVKFMQGNMLELQNKISD-SFD-LVFCIGNSIVHLENLE 116 >gi|254435259|ref|ZP_05048766.1| ribosomal RNA small subunit methyltransferase B [Nitrosococcus oceani AFC27] gi|207088370|gb|EDZ65642.1| ribosomal RNA small subunit methyltransferase B [Nitrosococcus oceani AFC27] Length = 435 Score = 42.5 bits (99), Expect = 0.10, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 3/88 (3%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCGQETMRDYKEQFSL 87 LL PG+ +LDA GG + ++ + IALD D + ++ + + + Sbjct: 242 LLALTPGQRVLDACAAPGGKTSHILELEPQLETLIALDLDATRLERLNSNLKRLQLKAEV 301 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGVSS 115 Q Q + D ++ D S Sbjct: 302 IQGNALQPDTWWDGIPFDRILLDAPCSG 329 >gi|170783539|ref|YP_001742032.1| methyltransferase [Arthrobacter sp. AK-1] gi|150035026|gb|ABR67037.1| hypothetical methyltransferase [Arthrobacter sp. AK-1] Length = 210 Score = 42.5 bits (99), Expect = 0.10, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 8/75 (10%) Query: 43 ATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYV- 99 T G G S+ + ++V A+D DP + + Y ++ L Q + + L+ + Sbjct: 47 GT-GYG--SQLVLEQFCAASVDAVDLDPAMIERAARRLARYGDRVRLAQGSATDLRSALN 103 Query: 100 -PDKGVDGVVFDLGV 113 D D V FD G+ Sbjct: 104 AADDDYDAV-FDFGI 117 >gi|254483320|ref|ZP_05096551.1| ribosomal RNA small subunit methyltransferase B [marine gamma proteobacterium HTCC2148] gi|214036415|gb|EEB77091.1| ribosomal RNA small subunit methyltransferase B [marine gamma proteobacterium HTCC2148] Length = 433 Score = 42.5 bits (99), Expect = 0.11, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 3/82 (3%) Query: 36 PGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATF 92 PG+ +LDA GG S + + A+D DP + Q+ + Q SL Sbjct: 242 PGERVLDACAAPGGKSCHILELQPALGELTAMDLDPQRLERVQQNLERLGLQASLIAGDG 301 Query: 93 SQLQDYVPDKGVDGVVFDLGVS 114 + + + D V+ D S Sbjct: 302 ANPPPVLAAQSFDKVLVDAPCS 323 >gi|14590712|ref|NP_142782.1| fmu protein [Pyrococcus horikoshii OT3] gi|186972907|pdb|2YXL|A Chain A, Crystal Structure Of Ph0851 gi|3257262|dbj|BAA29945.1| 450aa long hypothetical fmu protein [Pyrococcus horikoshii OT3] Length = 450 Score = 42.5 bits (99), Expect = 0.11, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 35/87 (40%), Gaps = 12/87 (13%) Query: 32 LNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ--FS 86 L+P PG+ ++D GG + K + A D D + ++D+ ++ Sbjct: 255 LDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMR----MKRLKDFVKRMGIK 310 Query: 87 LFQ---ATFSQLQDYVPDKGVDGVVFD 110 + + + + + ++ D V+ D Sbjct: 311 IVKPLVKDARKAPEIIGEEVADKVLLD 337 >gi|114320671|ref|YP_742354.1| putative rRNA methylase [Alkalilimnicola ehrlichii MLHE-1] gi|114227065|gb|ABI56864.1| putative rRNA methylase [Alkalilimnicola ehrlichii MLHE-1] Length = 194 Score = 42.5 bits (99), Expect = 0.11, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 10/82 (12%) Query: 41 LDATFGAGGYSRSFCK----MGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQ 94 +DAT G G+ F +V A D P A++ ++ +R + +L A Sbjct: 25 VDATAGN-GHDTVFLADQVGASGHVWAFDIQPTALAATRQRLRARGLASRATLVAAGHET 83 Query: 95 LQDYVP---DKGVDGVVFDLGV 113 L +++P G+ V+F+LG Sbjct: 84 LAEHLPPQVQGGLAAVMFNLGY 105 >gi|188584795|ref|YP_001916340.1| putative rRNA methylase [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349482|gb|ACB83752.1| putative rRNA methylase [Natranaerobius thermophilus JW/NM-WN-LF] Length = 190 Score = 42.5 bits (99), Expect = 0.11, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 8/86 (9%) Query: 34 PAPGKVILDATFGAGGY-SRSFCKMGSN---VIALDRDPFAVSCGQETMRDYK--EQFSL 87 + G ++DAT G G+ + + V A D A+ + ++ E+ L Sbjct: 21 ISQGDRVVDATCGN-GHDTEYLANRVGDQGLVYAFDIQKQALETTWKRLQQEGLHERVRL 79 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGV 113 +L + V + V V+F+LG Sbjct: 80 LNKGHEKLIEDV-EGPVSCVMFNLGY 104 >gi|127514666|ref|YP_001095863.1| sun protein [Shewanella loihica PV-4] gi|126639961|gb|ABO25604.1| sun protein [Shewanella loihica PV-4] Length = 427 Score = 42.5 bits (99), Expect = 0.11, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 2/86 (2%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88 LL P ++ILDA GG S + +++A+D D + Q+ + + L Sbjct: 236 LLAPEANELILDACAAPGGKSCHLLESQPSIDLVAVDFDAKRLERVQQNLDRLSLKAKLV 295 Query: 89 QATFSQLQDYVPDKGVDGVVFDLGVS 114 +++ + D ++ D S Sbjct: 296 HGDAAKIDSWWQGDKFDRILLDAPCS 321 >gi|302523658|ref|ZP_07276000.1| methyltransferase [Streptomyces sp. AA4] gi|302432553|gb|EFL04369.1| methyltransferase [Streptomyces sp. AA4] Length = 258 Score = 42.1 bits (98), Expect = 0.11, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 7/91 (7%) Query: 23 VLLEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETM--- 78 VL ++++A L P P +LD G G+ S ++G +V+ LD +S ++ + Sbjct: 32 VLHQQLLAHL-PPPPATVLDV-GGGAGHQSFPLARLGYDVVLLDSSDAMLSMAEQRLAAE 89 Query: 79 -RDYKEQFSLFQATFSQLQDYVPDKGVDGVV 108 + +E+ L ++ V + D V+ Sbjct: 90 SAEVRERVRLVRSRGEDAVAAVAGQKFDAVL 120 >gi|313114641|ref|ZP_07800148.1| acetyltransferase, GNAT family [Faecalibacterium cf. prausnitzii KLE1255] gi|310623044|gb|EFQ06492.1| acetyltransferase, GNAT family [Faecalibacterium cf. prausnitzii KLE1255] Length = 288 Score = 42.1 bits (98), Expect = 0.11, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 6/79 (7%) Query: 41 LDATFGAGGYSRSFC---KMGSNVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQ 94 +DAT G GG + C V+ D A++ ++ + ++ L + + Sbjct: 125 IDATCGNGGDTAFLCGITAPEGKVVGFDVQEAAIASTRKHLEQLGVPAARYELHCQSHAD 184 Query: 95 LQDYVPDKGVDGVVFDLGV 113 L V D V+F+ G Sbjct: 185 LLQVVQPGTADAVMFNFGW 203 >gi|114045538|ref|YP_736088.1| sun protein [Shewanella sp. MR-7] gi|113886980|gb|ABI41031.1| sun protein [Shewanella sp. MR-7] Length = 429 Score = 42.1 bits (98), Expect = 0.12, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 36/86 (41%), Gaps = 2/86 (2%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQFSLF 88 LL P +++LDA GG S ++ + ++A+D D + Q+ + + + Sbjct: 236 LLAPQANELVLDACAAPGGKSCHLLELEPSIQLVAVDFDAKRLERVQQNLDRLSLKAEVI 295 Query: 89 QATFSQLQDYVPDKGVDGVVFDLGVS 114 + + + + D ++ D S Sbjct: 296 HGDAANIDSWWQGEQFDRILLDAPCS 321 >gi|117918492|ref|YP_867684.1| sun protein [Shewanella sp. ANA-3] gi|117610824|gb|ABK46278.1| sun protein [Shewanella sp. ANA-3] Length = 429 Score = 42.1 bits (98), Expect = 0.12, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 36/86 (41%), Gaps = 2/86 (2%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQFSLF 88 LL P +++LDA GG S ++ + ++A+D D + Q+ + + + Sbjct: 236 LLAPQANELVLDACAAPGGKSCHLLELEPSIQLVAVDFDAKRLERVQQNLDRLSLKAEVI 295 Query: 89 QATFSQLQDYVPDKGVDGVVFDLGVS 114 + + + + D ++ D S Sbjct: 296 HGDAANIDSWWQGEQFDRILLDAPCS 321 >gi|325265811|ref|ZP_08132497.1| rRNA methyltransferase [Kingella denitrificans ATCC 33394] gi|324982449|gb|EGC18075.1| rRNA methyltransferase [Kingella denitrificans ATCC 33394] Length = 222 Score = 42.1 bits (98), Expect = 0.12, Method: Composition-based stats. Identities = 16/94 (17%), Positives = 29/94 (30%), Gaps = 9/94 (9%) Query: 34 PAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYK--EQFSL 87 G ++D T G G+ V A D A+ + + ++ + +L Sbjct: 40 IREGDCVMDGTAGN-GHDTLLLAQCVGETGRVFAFDIQAAAIEATRARLAEHGLLPRVTL 98 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCG 121 Q Y+ + VF+ G D Sbjct: 99 IQDGHQHAAQYIRQP-LRAAVFNFGYL-PHGDKN 130 >gi|160881322|ref|YP_001560290.1| methyltransferase type 11 [Clostridium phytofermentans ISDg] gi|160429988|gb|ABX43551.1| Methyltransferase type 11 [Clostridium phytofermentans ISDg] Length = 247 Score = 42.1 bits (98), Expect = 0.12, Method: Composition-based stats. Identities = 27/94 (28%), Positives = 38/94 (40%), Gaps = 5/94 (5%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSL 87 + L GK ILD G GGYSR + G+ V A+D F ++ ++ + Sbjct: 35 TLQQLGNVSGKRILDLGCGEGGYSRELAQRGALVTAIDCSEFFINYSTNKAKEQGLHITH 94 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCG 121 F L D D D V+ S M +DC Sbjct: 95 FIRNSCDLYDI-QDNYFDIVL----CSMMLMDCE 123 >gi|308500069|ref|XP_003112220.1| hypothetical protein CRE_29769 [Caenorhabditis remanei] gi|308268701|gb|EFP12654.1| hypothetical protein CRE_29769 [Caenorhabditis remanei] Length = 571 Score = 42.1 bits (98), Expect = 0.12, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 42/115 (36%), Gaps = 18/115 (15%) Query: 42 DATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQDYV 99 DA G GG + F G++VIA+D DP + C +E R Y + A F + Sbjct: 399 DAFTGVGGNAIQFALRGAHVIAIDMDPVRLKCARENARVYGVADYIDFICADFFDVAATW 458 Query: 100 P-----DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS--CSGISASDV 147 VD V S S+ KS D+ +GI DV Sbjct: 459 AADKKLAPKVDAVFL-----SPPWGGP----SYLKSKEFDLATGCCPNGIDIFDV 504 >gi|15668567|ref|NP_247365.1| cobalamin biosynthesis precorrin-8W decarboxylase CbiT [Methanocaldococcus jannaschii DSM 2661] gi|2495954|sp|Q57836|CBIT_METJA RecName: Full=Probable cobalt-precorrin-6Y C(15)-methyltransferase [decarboxylating] gi|1591095|gb|AAB98376.1| cobalamin biosynthesis precorrin-8W decarboxylase (cbiT) [Methanocaldococcus jannaschii DSM 2661] Length = 183 Score = 42.1 bits (98), Expect = 0.12, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 5/100 (5%) Query: 6 CKTMSSAIHHTIGDHVPVLLEKV----IALLNPAPGKVILDATFGAGGYSRSFCKMGSNV 61 K M + VP+ E++ I LN V++D G+GG + K V Sbjct: 1 MKYMIPDEEFIRREGVPITKEEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAKRCKFV 60 Query: 62 IALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQLQDYVP 100 A+D A+ ++ + + + + + + D + Sbjct: 61 YAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDKLE 100 >gi|317051158|ref|YP_004112274.1| type 11 methyltransferase [Desulfurispirillum indicum S5] gi|316946242|gb|ADU65718.1| Methyltransferase type 11 [Desulfurispirillum indicum S5] Length = 268 Score = 42.1 bits (98), Expect = 0.12, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 38/104 (36%), Gaps = 11/104 (10%) Query: 25 LEKV---IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81 L ++ + LN G ILD G G +SR K G V LD ++ +D Sbjct: 28 LREIDFLLDELNLPAGSTILDIGCGTGRHSRELAKRGYRVTGLDLSSEMLANAATMAKDA 87 Query: 82 KEQFSLFQATFSQLQDYVPDKGVDGVV----FDLGVSSMQIDCG 121 A + +P++ D + LG+ S Q D Sbjct: 88 GMSVQWVHADATSFS--LPEQ-FDAAICLCEGSLGLLS-QTDDP 127 >gi|110802121|ref|YP_698470.1| hypothetical protein CPR_1148 [Clostridium perfringens SM101] gi|110682622|gb|ABG85992.1| conserved hypothetical protein [Clostridium perfringens SM101] Length = 183 Score = 42.1 bits (98), Expect = 0.12, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 5/76 (6%) Query: 39 VILDATFGAGGYSRSFC-KMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD 97 + +DAT G G+ F ++ V A D AVS + KE + + + Sbjct: 25 IAIDATLGN-GHDCDFLSELFKKVYAFDIQEEAVSSYK---SKNKENVEVILDSHENFET 80 Query: 98 YVPDKGVDGVVFDLGV 113 Y+ ++ VD +V++LG Sbjct: 81 YIKEENVDCIVYNLGY 96 >gi|148358673|ref|YP_001249880.1| rRNA methyltransferase [Legionella pneumophila str. Corby] gi|296108237|ref|YP_003619938.1| Sun protein [Legionella pneumophila 2300/99 Alcoy] gi|148280446|gb|ABQ54534.1| rRNA methyltransferase (SUN protein) [Legionella pneumophila str. Corby] gi|295650139|gb|ADG25986.1| Sun protein [Legionella pneumophila 2300/99 Alcoy] Length = 427 Score = 42.1 bits (98), Expect = 0.12, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 3/87 (3%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCGQETMRDYKEQFSL 87 LL+ PG+ +LDA GG + + S + +ALD DP + ++ + Q ++ Sbjct: 232 LLSLKPGQRVLDACCAPGGKTCHILEKESGLASCVALDLDPQRLQRVRDNLNRLDLQATV 291 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGVS 114 Q + + + D ++ D S Sbjct: 292 VQGDVLEPRSWWDGHPFDRILLDAPCS 318 >gi|305664185|ref|YP_003860473.1| RNA methylase, NOL1/NOP2/sun family [Ignisphaera aggregans DSM 17230] gi|304378754|gb|ADM28593.1| RNA methylase, NOL1/NOP2/sun family [Ignisphaera aggregans DSM 17230] Length = 455 Score = 42.1 bits (98), Expect = 0.13, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 4/84 (4%) Query: 31 LLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQFS 86 LL+P PG+V++D GG + + A D D + QE + Sbjct: 260 LLDPKPGEVVIDLCAAPGGKTEHMGELMNNTGIIYAFDIDKTRIKRMQEILNRCGISIVK 319 Query: 87 LFQATFSQLQDYVPDKGVDGVVFD 110 +F + + + D V+ D Sbjct: 320 IFNEDARKATEILGRNIADKVLVD 343 >gi|261400430|ref|ZP_05986555.1| putative rRNA methylase [Neisseria lactamica ATCC 23970] gi|269209877|gb|EEZ76332.1| putative rRNA methylase [Neisseria lactamica ATCC 23970] Length = 188 Score = 42.1 bits (98), Expect = 0.13, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 12/95 (12%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMR 79 LL +V+ G LD T G G+ F V A D P A++ + ++ Sbjct: 13 LLRQVL-----PEGGNALDGTAGN-GHDTLFLAQTAGIRGKVWAFDIQPQALNNTRCRLQ 66 Query: 80 DYK-EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + L L+ YV + ++ +F+ G Sbjct: 67 EAGYSNVRLILDGHENLKQYVSEP-LNAAIFNFGW 100 >gi|148700826|gb|EDL32773.1| mCG18000 [Mus musculus] Length = 819 Score = 42.1 bits (98), Expect = 0.13, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 2/68 (2%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96 V++DA G GG + F G VIA+D DP + + Y ++ F L Sbjct: 655 VVVDAFCGVGGNTIQFALTGKRVIAIDIDPVKIDLARNNAEVYGVADKIEFICGDFLLLA 714 Query: 97 DYVPDKGV 104 + V Sbjct: 715 PCLKADVV 722 >gi|227496324|ref|NP_473430.3| trimethylguanosine synthase [Mus musculus] gi|143811468|sp|Q923W1|TGS1_MOUSE RecName: Full=Trimethylguanosine synthase; AltName: Full=Nuclear receptor coactivator 6-interacting protein; AltName: Full=PRIP-interacting protein with methyltransferase motif; Short=PIMT; Short=PIPMT gi|123228825|emb|CAM17201.1| trimethylguanosine synthase homolog (S. cerevisiae) [Mus musculus] gi|148673771|gb|EDL05718.1| nuclear receptor coactivator 6 interacting protein [Mus musculus] Length = 853 Score = 42.1 bits (98), Expect = 0.13, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 2/68 (2%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96 V++DA G GG + F G VIA+D DP + + Y ++ F L Sbjct: 685 VVVDAFCGVGGNTIQFALTGKRVIAIDIDPVKIDLARNNAEVYGIADKIEFICGDFLLLA 744 Query: 97 DYVPDKGV 104 + V Sbjct: 745 PCLKADVV 752 >gi|20071722|gb|AAH26368.1| Tgs1 protein [Mus musculus] Length = 342 Score = 42.1 bits (98), Expect = 0.13, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 2/68 (2%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96 V++DA G GG + F G VIA+D DP + + Y ++ F L Sbjct: 174 VVVDAFCGVGGNTIQFALTGKRVIAIDIDPVKIDLARNNAEVYGIADKIEFICGDFLLLA 233 Query: 97 DYVPDKGV 104 + V Sbjct: 234 PCLKADVV 241 >gi|49903612|gb|AAH75728.1| Trimethylguanosine synthase homolog (S. cerevisiae) [Mus musculus] Length = 853 Score = 42.1 bits (98), Expect = 0.13, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 2/68 (2%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96 V++DA G GG + F G VIA+D DP + + Y ++ F L Sbjct: 685 VVVDAFCGVGGNTIQFALTGKRVIAIDIDPVKIDLARNNAEVYGIADKIEFICGDFLLLA 744 Query: 97 DYVPDKGV 104 + V Sbjct: 745 PCLKADVV 752 >gi|15127914|gb|AAK84355.1|AF389908_1 PIMT [Mus musculus] Length = 853 Score = 42.1 bits (98), Expect = 0.13, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 2/68 (2%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96 V++DA G GG + F G VIA+D DP + + Y ++ F L Sbjct: 685 VVVDAFCGVGGNTIQFALTGKRVIAIDIDPVKIDLARNNAEVYGIADKIEFICGDFLLLA 744 Query: 97 DYVPDKGV 104 + V Sbjct: 745 PCLKADVV 752 >gi|242243021|ref|ZP_04797466.1| rRNA methyltransferase [Staphylococcus epidermidis W23144] gi|242233479|gb|EES35791.1| rRNA methyltransferase [Staphylococcus epidermidis W23144] Length = 187 Score = 42.1 bits (98), Expect = 0.13, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 6/85 (7%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91 +++DAT G G + F + N V D A+ + ++DY L Q+ Sbjct: 18 INHNSIVIDATCGNGNDTAYFAQHVPNGFVYGFDIQEQAILNTHKKIKDY-SNVKLIQSG 76 Query: 92 FSQLQDYVPDK---GVDGVVFDLGV 113 + ++P + +D +F+LG Sbjct: 77 HENAKLHIPAQYHGHIDAAIFNLGY 101 >gi|150401405|ref|YP_001325171.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit [Methanococcus aeolicus Nankai-3] gi|150014108|gb|ABR56559.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit [Methanococcus aeolicus Nankai-3] Length = 187 Score = 42.1 bits (98), Expect = 0.13, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 4/66 (6%) Query: 21 VPVLLEKV----IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQE 76 VP+ E++ I L P V++D G+GG + K V A+D A++ ++ Sbjct: 20 VPITKEEIRAVSIGKLQLKPNDVVVDIGCGSGGMTVEIAKRCKFVYAIDGSDNAINTTKK 79 Query: 77 TMRDYK 82 + + Sbjct: 80 NLERFN 85 >gi|328948779|ref|YP_004366116.1| methyltransferase type 11 [Treponema succinifaciens DSM 2489] gi|328449103|gb|AEB14819.1| Methyltransferase type 11 [Treponema succinifaciens DSM 2489] Length = 141 Score = 42.1 bits (98), Expect = 0.13, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 34/81 (41%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H V+ KV LL+P P ILD G G YS + G++V+A D + + Sbjct: 50 HREVVRPKVTELLSPNPADYILDIACGNGNYSSYLAQRGASVVAFDYSKKMIELAKRRQS 109 Query: 80 DYKEQFSLFQATFSQLQDYVP 100 Y +Q A + + + Sbjct: 110 QYAKQIEFCVADATNRKSILE 130 >gi|315656323|ref|ZP_07909214.1| methyltransferase domain protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315493325|gb|EFU82925.1| methyltransferase domain protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 255 Score = 42.1 bits (98), Expect = 0.13, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 34/81 (41%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H V+ KV LL+P P ILD G G YS + G++V+A D + + Sbjct: 50 HREVVRPKVTELLSPNPADYILDIACGNGNYSSYLAQRGASVVAFDYSKKMIELAKRRQS 109 Query: 80 DYKEQFSLFQATFSQLQDYVP 100 Y +Q A + + + Sbjct: 110 QYAKQIEFCVADATNRKSILE 130 >gi|312864561|ref|ZP_07724792.1| putative rRNA methylase [Streptococcus downei F0415] gi|311099688|gb|EFQ57901.1| putative rRNA methylase [Streptococcus downei F0415] Length = 182 Score = 42.1 bits (98), Expect = 0.13, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 12/92 (13%) Query: 23 VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR-DY 81 VL ++ IA +DAT G G + + V A D A++ QE + + Sbjct: 16 VLAKEAIA----------VDATMGNGNDTAFLAGLVKKVYAFDVQKQALAKTQERLASQH 65 Query: 82 KEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 L L YV + + +F+LG Sbjct: 66 LTNAELILDGHENLDKYVSEP-IRAAIFNLGY 96 >gi|269976671|ref|ZP_06183648.1| SAM independent family methyltransferase [Mobiluncus mulieris 28-1] gi|269935145|gb|EEZ91702.1| SAM independent family methyltransferase [Mobiluncus mulieris 28-1] Length = 247 Score = 42.1 bits (98), Expect = 0.13, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 34/81 (41%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H V+ KV LL+P P ILD G G YS + G++V+A D + + Sbjct: 42 HREVVRPKVTELLSPNPADYILDIACGNGNYSSYLAQRGASVVAFDYSKKMIELAKRRQS 101 Query: 80 DYKEQFSLFQATFSQLQDYVP 100 Y +Q A + + + Sbjct: 102 QYAKQIEFCVADATNRKSILE 122 >gi|113968373|ref|YP_732166.1| sun protein [Shewanella sp. MR-4] gi|113883057|gb|ABI37109.1| sun protein [Shewanella sp. MR-4] Length = 429 Score = 42.1 bits (98), Expect = 0.13, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 36/86 (41%), Gaps = 2/86 (2%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQFSLF 88 LL P ++ILDA GG S ++ + ++A+D D + Q+ + + + Sbjct: 236 LLAPQANELILDACAAPGGKSCHLLELEPSIQLVAVDFDAKRLERVQQNLDRLSLKAEVI 295 Query: 89 QATFSQLQDYVPDKGVDGVVFDLGVS 114 + + + + D ++ D S Sbjct: 296 HGDAANIDSWWQGEQFDRILLDAPCS 321 >gi|313632956|gb|EFR99886.1| methylase protein [Listeria seeligeri FSL N1-067] Length = 191 Score = 42.1 bits (98), Expect = 0.13, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 8/86 (9%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK--EQFSL 87 PG ++DAT G G+ +V+ D A++ + + + Q L Sbjct: 18 VRPGDYVVDATCGN-GHDTLLLAELVGVNGHVLGFDIQQVAIATTKTRLENAAVSSQVEL 76 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGV 113 A+ + + +Y V +F+LG Sbjct: 77 ICASHATIPEY-ATTPVRAAIFNLGY 101 >gi|294787666|ref|ZP_06752910.1| putative rRNA methylase [Simonsiella muelleri ATCC 29453] gi|294483959|gb|EFG31642.1| putative rRNA methylase [Simonsiella muelleri ATCC 29453] Length = 190 Score = 42.1 bits (98), Expect = 0.13, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 32/84 (38%), Gaps = 6/84 (7%) Query: 35 APGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQ 89 G + +D T G G + ++ V A D A+ + +R+ + SL Q Sbjct: 19 KTGDIAVDGTMGNGNDTLFLAQLVGETGKVYAFDIQAAALLATERRLREADVLTRVSLIQ 78 Query: 90 ATFSQLQDYVPDKGVDGVVFDLGV 113 L YVP V VF+ G Sbjct: 79 VGHENLAQYVPQ-NVAAAVFNFGY 101 >gi|319936229|ref|ZP_08010649.1| SAM independent family methyltransferase [Coprobacillus sp. 29_1] gi|319808803|gb|EFW05336.1| SAM independent family methyltransferase [Coprobacillus sp. 29_1] Length = 255 Score = 42.1 bits (98), Expect = 0.13, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 1/99 (1%) Query: 3 SKSCKTMSSAIHHTIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV 61 K+ + +A+ + H V+ KV LL+P P ILD G G YS + G+++ Sbjct: 32 EKNAQFWDNAMGDESNEFHREVVRPKVTELLSPNPADYILDIACGNGNYSSYLAQRGASI 91 Query: 62 IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP 100 +A D + + Y +Q A + + + Sbjct: 92 VAFDYSKKMIELAKRRQSQYAKQIEFCVADATNRESILE 130 >gi|332652414|ref|ZP_08418159.1| methyltransferase domain protein [Ruminococcaceae bacterium D16] gi|332517560|gb|EGJ47163.1| methyltransferase domain protein [Ruminococcaceae bacterium D16] Length = 243 Score = 42.1 bits (98), Expect = 0.13, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 34/81 (41%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H V+ KV LL+P P ILD G G YS + G++V+A D + + Sbjct: 50 HREVVRPKVTELLSPNPADYILDIACGNGNYSSYLAQRGASVVAFDYSKKMIELAKRRQS 109 Query: 80 DYKEQFSLFQATFSQLQDYVP 100 Y +Q A + + + Sbjct: 110 QYAKQIEFCVADATDRKSILE 130 >gi|237745702|ref|ZP_04576182.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS] gi|229377053|gb|EEO27144.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS] Length = 255 Score = 42.1 bits (98), Expect = 0.13, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 34/81 (41%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H V+ KV LL+P P ILD G G YS + G++V+A D + + Sbjct: 50 HREVVRPKVTELLSPNPADYILDIACGNGNYSSYLAQRGASVVAFDYSKKMIELAKRRQS 109 Query: 80 DYKEQFSLFQATFSQLQDYVP 100 Y +Q A + + + Sbjct: 110 QYAKQIEFCVADATDRKSILE 130 >gi|168259009|gb|ACA23190.1| SAM independent family methyltransferase [Bifidobacterium thermophilum] Length = 255 Score = 42.1 bits (98), Expect = 0.13, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 34/81 (41%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H V+ KV LL+P P ILD G G YS + G++V+A D + + Sbjct: 50 HREVVRPKVTELLSPNPADYILDIACGNGNYSSYLAQRGASVVAFDYSKKMIELAKRRQS 109 Query: 80 DYKEQFSLFQATFSQLQDYVP 100 Y +Q A + + + Sbjct: 110 QYAKQIEFCVADATDRKSILE 130 >gi|152971649|ref|YP_001336758.1| 23S rRNA 5-methyluridine methyltransferase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238896246|ref|YP_002920982.1| 23S rRNA 5-methyluridine methyltransferase [Klebsiella pneumoniae NTUH-K2044] gi|226725383|sp|A6TD57|RUMA_KLEP7 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|150956498|gb|ABR78528.1| 23S rRNA (uracil-5-)-methyltransferase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238548564|dbj|BAH64915.1| 23S rRNA (uracil-5-)-methyltransferase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 434 Score = 42.1 bits (98), Expect = 0.13, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 33/90 (36%), Gaps = 3/90 (3%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82 ++ + L+ P +LD G G ++ ++V+ ++ P V G+E Sbjct: 274 MVRTALEWLDLRPEDRVLDLFCGMGNFTLPLATRAAHVVGVEGVPALVEKGRENAARNGL 333 Query: 83 EQFSLFQATFSQ--LQDYVPDKGVDGVVFD 110 + F + + G D V+ D Sbjct: 334 SNVTFFHENLEEDVTRQAWAKHGFDKVLLD 363 >gi|154497882|ref|ZP_02036260.1| hypothetical protein BACCAP_01860 [Bacteroides capillosus ATCC 29799] gi|150272872|gb|EDN00029.1| hypothetical protein BACCAP_01860 [Bacteroides capillosus ATCC 29799] Length = 255 Score = 42.1 bits (98), Expect = 0.13, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 34/81 (41%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H V+ KV LL+P P ILD G G YS + G++V+A D + + Sbjct: 50 HREVVRPKVTELLSPNPADYILDIACGNGNYSSYLAQRGASVVAFDYSKKMIELAKRRQS 109 Query: 80 DYKEQFSLFQATFSQLQDYVP 100 Y +Q A + + + Sbjct: 110 QYAKQIEFCVADATDRKSILE 130 >gi|82470773|gb|ABB77424.1| unknown protein [Clostridiaceae bacterium K10] Length = 246 Score = 42.1 bits (98), Expect = 0.13, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 34/81 (41%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H V+ KV LL+P P ILD G G YS + G++V+A D + + Sbjct: 50 HREVVRPKVTELLSPNPADYILDIACGNGNYSSYLAQRGASVVAFDYSKKMIELAKRRQS 109 Query: 80 DYKEQFSLFQATFSQLQDYVP 100 Y +Q A + + + Sbjct: 110 QYAKQIEFCVADATDRKSILE 130 >gi|160944450|ref|ZP_02091678.1| hypothetical protein FAEPRAM212_01960 [Faecalibacterium prausnitzii M21/2] gi|225019542|ref|ZP_03708734.1| hypothetical protein CLOSTMETH_03495 [Clostridium methylpentosum DSM 5476] gi|226325675|ref|ZP_03801193.1| hypothetical protein COPCOM_03488 [Coprococcus comes ATCC 27758] gi|261366542|ref|ZP_05979425.1| methyltransferase domain protein [Subdoligranulum variabile DSM 15176] gi|283796490|ref|ZP_06345643.1| methyltransferase domain protein [Clostridium sp. M62/1] gi|290969249|ref|ZP_06560774.1| methyltransferase domain protein [Megasphaera genomosp. type_1 str. 28L] gi|323141251|ref|ZP_08076150.1| methyltransferase domain protein [Phascolarctobacterium sp. YIT 12067] gi|331004537|ref|ZP_08328006.1| hypothetical protein HMPREF0491_02868 [Lachnospiraceae oral taxon 107 str. F0167] gi|82470801|gb|ABB77439.1| unknown [Mitsuokella multacida] gi|82523583|emb|CAJ43595.1| hypothetical protein [Roseburia sp. A2-183] gi|94016157|emb|CAJ97449.1| hypothetical protein [Butyrivibrio fibrisolvens] gi|158444232|gb|EDP21236.1| hypothetical protein FAEPRAM212_01960 [Faecalibacterium prausnitzii M21/2] gi|224947687|gb|EEG28896.1| hypothetical protein CLOSTMETH_03495 [Clostridium methylpentosum DSM 5476] gi|225205799|gb|EEG88153.1| hypothetical protein COPCOM_03488 [Coprococcus comes ATCC 27758] gi|282571357|gb|EFB76892.1| methyltransferase domain protein [Subdoligranulum variabile DSM 15176] gi|290780755|gb|EFD93358.1| methyltransferase domain protein [Megasphaera genomosp. type_1 str. 28L] gi|291075903|gb|EFE13267.1| methyltransferase domain protein [Clostridium sp. M62/1] gi|291530480|emb|CBK96065.1| Methylase involved in ubiquinone/menaquinone biosynthesis [Eubacterium siraeum 70/3] gi|291557364|emb|CBL34481.1| Methylase involved in ubiquinone/menaquinone biosynthesis [Eubacterium siraeum V10Sc8a] gi|295090343|emb|CBK76450.1| Methylase involved in ubiquinone/menaquinone biosynthesis [Clostridium cf. saccharolyticum K10] gi|295100568|emb|CBK98113.1| Methylase involved in ubiquinone/menaquinone biosynthesis [Faecalibacterium prausnitzii L2-6] gi|295115489|emb|CBL36336.1| Methylase involved in ubiquinone/menaquinone biosynthesis [butyrate-producing bacterium SM4/1] gi|322414290|gb|EFY05110.1| methyltransferase domain protein [Phascolarctobacterium sp. YIT 12067] gi|330410645|gb|EGG90069.1| hypothetical protein HMPREF0491_02868 [Lachnospiraceae oral taxon 107 str. F0167] Length = 255 Score = 42.1 bits (98), Expect = 0.13, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 34/81 (41%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H V+ KV LL+P P ILD G G YS + G++V+A D + + Sbjct: 50 HREVVRPKVTELLSPNPADYILDIACGNGNYSSYLAQRGASVVAFDYSKKMIELAKRRQS 109 Query: 80 DYKEQFSLFQATFSQLQDYVP 100 Y +Q A + + + Sbjct: 110 QYAKQIEFCVADATDRKSILE 130 >gi|156379240|ref|XP_001631366.1| predicted protein [Nematostella vectensis] gi|156218405|gb|EDO39303.1| predicted protein [Nematostella vectensis] Length = 213 Score = 42.1 bits (98), Expect = 0.14, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 5/73 (6%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96 +I+DA G GG + F VIA+D DP + C + Y ++ F Q+ Sbjct: 55 LIVDAFCGVGGNAIQFAFTCERVIAIDIDPVKIDCARHNAEIYGVADRIEFVLGDFRQI- 113 Query: 97 DYVPDKGVDGVVF 109 VP D + Sbjct: 114 --VPQLKADVIFL 124 >gi|326434167|gb|EGD79737.1| hypothetical protein PTSG_10720 [Salpingoeca sp. ATCC 50818] Length = 183 Score = 42.1 bits (98), Expect = 0.14, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 2/59 (3%) Query: 19 DHVPVLLEKVIALLNPA-PGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQ 75 H P L +KV+ N G LD T GAG + R K G+ N+I+ D D + Q Sbjct: 112 HHFPALYKKVVKGFNQTFRGNTHLDMTLGAGNHVRHVFKAGAQNIISADGDDSVIDTAQ 170 >gi|322375523|ref|ZP_08050036.1| SAM-dependent methyltransferase, MraW methylase family [Streptococcus sp. C300] gi|321279786|gb|EFX56826.1| SAM-dependent methyltransferase, MraW methylase family [Streptococcus sp. C300] Length = 187 Score = 42.1 bits (98), Expect = 0.14, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 10/91 (10%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82 L +V+ +++DAT G G+ + K+ V A D A+ QE + Sbjct: 14 LAEVV----TKED-IVVDATMGN-GHDTLFLAKLAKQVYAFDIQEQALEKTQERLDQAGM 67 Query: 83 EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + L L +V + G+ F+LG Sbjct: 68 KNAQLILKGHETLDQFVTEAKA-GI-FNLGY 96 >gi|299133709|ref|ZP_07026903.1| dimethyladenosine transferase [Afipia sp. 1NLS2] gi|298591545|gb|EFI51746.1| dimethyladenosine transferase [Afipia sp. 1NLS2] Length = 283 Score = 42.1 bits (98), Expect = 0.14, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 6/61 (9%) Query: 42 DATF-----GAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95 DAT G GG +R+ G+ VIA++RD A+ ++ R Y + + Sbjct: 48 DATVIEIGPGPGGLTRALLATGAKRVIAVERDDRAIPALEDIARHYPGRLEIVHGDAIDF 107 Query: 96 Q 96 Sbjct: 108 D 108 >gi|224499244|ref|ZP_03667593.1| hypothetical protein LmonF1_05937 [Listeria monocytogenes Finland 1988] Length = 175 Score = 42.1 bits (98), Expect = 0.14, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 8/86 (9%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK--EQFSL 87 G ++DAT G G+ +V+ D A+ +++ Q L Sbjct: 18 VRSGDYVVDATCGN-GHDTLLLAELVGVNGHVLGFDIQQLAIDATNTRLKNAGVSSQVEL 76 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGV 113 A+ +++ +Y K V +F+LG Sbjct: 77 VCASHARIPEY-TSKPVRAAIFNLGY 101 >gi|297621034|ref|YP_003709171.1| putative rRNA methylase [Waddlia chondrophila WSU 86-1044] gi|297376335|gb|ADI38165.1| putative rRNA methylase [Waddlia chondrophila WSU 86-1044] Length = 204 Score = 41.7 bits (97), Expect = 0.14, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 33/100 (33%), Gaps = 13/100 (13%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMG------SNVIALDRDPFAVSCGQETM-----RDYK 82 PG +++DAT G G+ + A D A++ ++++ + Sbjct: 23 VKPGDIVIDATCGN-GHDTLVLAQLALTVESGKLYACDLQKDAINSTKQSLLEKLEKKIV 81 Query: 83 EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGD 122 E+ S D + V ++LG D Sbjct: 82 ERIFFVHGCHSSFPDEIQPNSVRLAAYNLGYL-PGGDKAK 120 >gi|290893255|ref|ZP_06556242.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071] gi|290557237|gb|EFD90764.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071] Length = 191 Score = 41.7 bits (97), Expect = 0.15, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 13/96 (13%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMR 79 +L KV+ PG ++DAT G G+ +V+ D AV + + Sbjct: 13 MLRKVV-----RPGDYVIDATCGN-GHDTLLLAELVGINGHVLGFDIQQVAVDATKARLE 66 Query: 80 DYK--EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + Q L A+ +++ Y + V +F+LG Sbjct: 67 NAGVSSQVELVCASHARIPAY-TSRPVRAAIFNLGY 101 >gi|229916468|ref|YP_002885114.1| rRNA methylase [Exiguobacterium sp. AT1b] gi|229467897|gb|ACQ69669.1| putative rRNA methylase [Exiguobacterium sp. AT1b] Length = 190 Score = 41.7 bits (97), Expect = 0.15, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 34/88 (38%), Gaps = 9/88 (10%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK--EQFSL 87 G+V +D T G G+ F +V A D AV+ + + + + ++ Sbjct: 18 IEEGQVAIDMTAGN-GHDTLFLANAVGETGHVYAFDIQSEAVAATKARVEESGVSNRVTV 76 Query: 88 FQATFSQLQDYVPDKG--VDGVVFDLGV 113 + +Q V + + VF+LG Sbjct: 77 IHDSHDTVQAVVEKEARPITAAVFNLGY 104 >gi|83416467|gb|ABC18246.1| unknown [Selenomonas ruminantium] gi|83416473|gb|ABC18251.1| unknown [Selenomonas ruminantium] gi|83416479|gb|ABC18256.1| unknown [Selenomonas ruminantium] Length = 184 Score = 41.7 bits (97), Expect = 0.15, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 34/81 (41%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H V+ KV LL+P P ILD G G YS + G++V+A D + + Sbjct: 50 HREVVRPKVTELLSPNPADYILDIACGNGNYSSYLAQRGASVVAFDYSKKMIELAKRRQS 109 Query: 80 DYKEQFSLFQATFSQLQDYVP 100 Y +Q A + + + Sbjct: 110 QYAKQIEFCVADATDRKSILE 130 >gi|75859106|ref|XP_868893.1| hypothetical protein AN9511.2 [Aspergillus nidulans FGSC A4] gi|40747596|gb|EAA66752.1| hypothetical protein AN9511.2 [Aspergillus nidulans FGSC A4] Length = 187 Score = 41.7 bits (97), Expect = 0.15, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 5/88 (5%) Query: 27 KVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMRDYK-- 82 + +A +P K+++D GAGG + +F + G V A+++DP + C Q Y Sbjct: 81 EQVAHASPPERKILVDVFAGAGGNTIAFARSGHWKRVYAIEKDPATLRCAQHNAEVYGVA 140 Query: 83 EQFSLFQA-TFSQLQDYVPDKGVDGVVF 109 ++ + FQ F L+ + D V+F Sbjct: 141 DKITWFQGDCFDILKSQLKDLAPYSVLF 168 >gi|324993678|gb|EGC25597.1| rRNA methylase [Streptococcus sanguinis SK405] gi|324995009|gb|EGC26922.1| rRNA methylase [Streptococcus sanguinis SK678] gi|325696334|gb|EGD38225.1| rRNA methylase [Streptococcus sanguinis SK160] gi|327490109|gb|EGF21897.1| rRNA methylase [Streptococcus sanguinis SK1058] Length = 183 Score = 41.7 bits (97), Expect = 0.15, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 34/92 (36%), Gaps = 6/92 (6%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82 + +A + ++DAT G G+ + ++ V A D AV ++ + + Sbjct: 7 MAHAFLAEVVTKED-TVVDATMGN-GHDTLFLAQLAKQVYAFDIQEQAVEKTRQRLSEAG 64 Query: 83 -EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + L + L Y +F+LG Sbjct: 65 LDNAQLILSGHESLDQYTDHFK--AAIFNLGY 94 >gi|292654489|ref|YP_003534386.1| membrane protein [Haloferax volcanii DS2] gi|291371304|gb|ADE03531.1| membrane protein [Haloferax volcanii DS2] Length = 207 Score = 41.7 bits (97), Expect = 0.15, Method: Composition-based stats. Identities = 13/84 (15%), Positives = 31/84 (36%), Gaps = 3/84 (3%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83 + ++ + +L+ G +LD G G + + +V LD+ + E + E Sbjct: 33 MRDEALEMLDIQQGDRVLDVGCGTGFGTEGLLRYTDDVHGLDQSIHQMQKAWEKFGKHDE 92 Query: 84 QFSLFQATFSQLQDYVPDKGVDGV 107 ++ +L + D + Sbjct: 93 -VRFYRGDAERLP--FAEDSFDVI 113 >gi|242015860|ref|XP_002428565.1| prip interacting protein. pimt, putative [Pediculus humanus corporis] gi|212513199|gb|EEB15827.1| prip interacting protein. pimt, putative [Pediculus humanus corporis] Length = 553 Score = 41.7 bits (97), Expect = 0.15, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 2/60 (3%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96 +++DA G GG S F VIA+D DP + + R Y ++ F QL Sbjct: 393 IVIDAFCGVGGNSIQFAFTCERVIAIDIDPNKIKLAKHNARIYGVEDRIEFIIGDFKQLA 452 >gi|284802054|ref|YP_003413919.1| hypothetical protein LM5578_1809 [Listeria monocytogenes 08-5578] gi|284995196|ref|YP_003416964.1| hypothetical protein LM5923_1761 [Listeria monocytogenes 08-5923] gi|284057616|gb|ADB68557.1| hypothetical protein LM5578_1809 [Listeria monocytogenes 08-5578] gi|284060663|gb|ADB71602.1| hypothetical protein LM5923_1761 [Listeria monocytogenes 08-5923] Length = 191 Score = 41.7 bits (97), Expect = 0.16, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 8/86 (9%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK--EQFSL 87 G ++DAT G G+ +V+ D A+ +++ Q L Sbjct: 18 VRSGDYVVDATCGN-GHDTLLLAELVGVNGHVLGFDIQQLAIDATNTRLKNAGVSSQVEL 76 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGV 113 A+ +++ +Y K V +F+LG Sbjct: 77 VCASHARIPEY-TSKPVRAAIFNLGY 101 >gi|152978309|ref|YP_001343938.1| methyltransferase type 11 [Actinobacillus succinogenes 130Z] gi|150840032|gb|ABR74003.1| Methyltransferase type 11 [Actinobacillus succinogenes 130Z] Length = 257 Score = 41.7 bits (97), Expect = 0.16, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 60/166 (36%), Gaps = 22/166 (13%) Query: 22 PVLLEKVIA------LLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCG 74 PV L ++ LL GK +LD G G + R + + G++ V +D + Sbjct: 24 PVSLNNIVEKPTMLSLLPDLTGKKLLDLACGTGEHLRLYLERGADFVTGMDLSAAMLRQA 83 Query: 75 QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 ++ + D++ F+L+QA+ + + D + SS F + + P Sbjct: 84 EKNLADFRPHFTLYQASMEDFSQ-LAESEFDVI-----TSSFA-------FHYVQDFPKL 130 Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 +R + + + + + G E+ V R Sbjct: 131 LRAVATKLKPQGTLVFSQEHPIVTAYK--GGERWEKNAQKEQVAYR 174 >gi|303228827|ref|ZP_07315641.1| methyltransferase domain protein [Veillonella atypica ACS-134-V-Col7a] gi|302516539|gb|EFL58467.1| methyltransferase domain protein [Veillonella atypica ACS-134-V-Col7a] Length = 191 Score = 41.7 bits (97), Expect = 0.16, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 10/88 (11%) Query: 35 APGKVILDATFGAGGYSRSFC----KMGSNVIALDRDPFAVSCGQETMRDYKEQ----FS 86 V++DAT G G+ + + ++ +D AVS +E + K Q + Sbjct: 20 KSASVVVDATCGN-GHDLLYLAERAQSECHLYGIDIQEQAVSASRELLASKKLQSNVTIT 78 Query: 87 LFQATFSQ-LQDYVPDKGVDGVVFDLGV 113 + L + + +D ++F+LG Sbjct: 79 FLHNSHDIALHQEIKENTIDLIIFNLGY 106 >gi|242094784|ref|XP_002437882.1| hypothetical protein SORBIDRAFT_10g004380 [Sorghum bicolor] gi|241916105|gb|EER89249.1| hypothetical protein SORBIDRAFT_10g004380 [Sorghum bicolor] Length = 209 Score = 41.7 bits (97), Expect = 0.16, Method: Composition-based stats. Identities = 38/209 (18%), Positives = 67/209 (32%), Gaps = 38/209 (18%) Query: 14 HHTIGDHV-PVLLEKVIALLNPAPGKVILD-----ATFGAGGYSRSFCKMGSNVIALDRD 67 + G H+ +L + GKV+ D T G + + +V+ +D D Sbjct: 25 QYPTGPHIASRMLYTAENSFDDITGKVVADFGCGCGTLAVG---SALLEA-EHVLGIDID 80 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127 P ++ QE D + L + L + VD VV F Sbjct: 81 PQSLELAQENAADLELDIDLVWSDIKNL--NLKGVHVDTVVM----------NPP--FGT 126 Query: 128 QKSGPLDMRMSCSGIS-ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186 +++G DM G+ AS V + + + +R A + + R P Sbjct: 127 RRNGA-DMEFLSMGLKVASQAVYSLHKTSTREHIKKMALRGCNARSAEVLCELRYGLP-- 183 Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQ 215 +T F K + A ++ Sbjct: 184 ----------QTYKFHKKKEVDIAVDLWR 202 >gi|299823066|ref|ZP_07054952.1| rRNA methyltransferase [Listeria grayi DSM 20601] gi|299816595|gb|EFI83833.1| rRNA methyltransferase [Listeria grayi DSM 20601] Length = 187 Score = 41.7 bits (97), Expect = 0.16, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 35/86 (40%), Gaps = 6/86 (6%) Query: 33 NPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK--EQFSL 87 PG ++D T G G + ++ V A D A+ ++ + + +L Sbjct: 17 AIRPGGQVIDGTCGNGNDTVLLAELVGENGQVFAFDIQSQAIEATRQKLTEQNLLAPVTL 76 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGV 113 Q + Q+ ++V + +F+LG Sbjct: 77 IQDSHDQISEHVKTP-IQAAIFNLGY 101 >gi|229579627|ref|YP_002838026.1| Fmu (Sun) domain protein [Sulfolobus islandicus Y.G.57.14] gi|228010342|gb|ACP46104.1| Fmu (Sun) domain protein [Sulfolobus islandicus Y.G.57.14] Length = 339 Score = 41.7 bits (97), Expect = 0.16, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQF 85 V LL+P P + I+D T AGG ++ +I D V ++ + + Sbjct: 162 VAHLLDPQPNEKIVDMTAYAGGKLSHIYQLEPRVKLIGFDHTEKKVEKLRDLVNKMGMRI 221 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 +++A L + + VD V+ D S Sbjct: 222 EIYKADSRYLYEDYNIRDVDKVIIDPPCS 250 >gi|261346903|ref|ZP_05974547.1| ribosomal RNA small subunit methyltransferase B [Providencia rustigianii DSM 4541] gi|282564970|gb|EFB70505.1| ribosomal RNA small subunit methyltransferase B [Providencia rustigianii DSM 4541] Length = 428 Score = 41.7 bits (97), Expect = 0.16, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 41/89 (46%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85 LL+P G ILD GG + ++ +V+A+D D + +E ++ K+Q Sbjct: 238 CAELLSPVDGDSILDLCAAPGGKTTHILELAPKAHVLAVDIDDSRLKRVKENLQRLKQQA 297 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + Q ++ +++ + D ++ D S Sbjct: 298 IVIQGDGTKPEEWAHGQQFDRILLDAPCS 326 >gi|306831998|ref|ZP_07465153.1| rRNA methylase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|306834120|ref|ZP_07467240.1| rRNA methylase [Streptococcus bovis ATCC 700338] gi|325978945|ref|YP_004288661.1| rRNA methylase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|304423693|gb|EFM26839.1| rRNA methylase [Streptococcus bovis ATCC 700338] gi|304425924|gb|EFM29041.1| rRNA methylase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325178873|emb|CBZ48917.1| rRNA methylase (SAM-dependent methyltransferase superfamily) [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 187 Score = 41.7 bits (97), Expect = 0.16, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 7/90 (7%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-E 83 L +V+ A +DAT G G + + V A D A+ +E + + Sbjct: 13 LAEVLDEQAIA-----VDATMGNGNDTAFLAQHAKEVYAFDVQEQALQSTKERLEKQEIH 67 Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 L + YV + +F+LG Sbjct: 68 NAHLILDGHQHIDHYVNQP-IRAAIFNLGY 96 >gi|118497214|ref|YP_898264.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis subsp. novicida U112] gi|194323513|ref|ZP_03057290.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Francisella tularensis subsp. novicida FTE] gi|143581148|sp|A0Q5J5|RUMA_FRATN RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|118423120|gb|ABK89510.1| RNA methyltransferase, trmA family [Francisella novicida U112] gi|194322368|gb|EDX19849.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Francisella tularensis subsp. novicida FTE] Length = 449 Score = 41.7 bits (97), Expect = 0.16, Method: Composition-based stats. Identities = 26/162 (16%), Positives = 56/162 (34%), Gaps = 24/162 (14%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83 ++++ I LL+ + I+D G G ++ + VI ++ +P V +ET + Sbjct: 289 MIKRAIELLDISENDSIIDLFCGLGNFTLPISQHAKTVIGVEGEPTMVKRAKETADN--N 346 Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGIS 143 + + L + S + F + K M + Sbjct: 347 NITNVNFYAANLFE-----------------SFEDKEWFNNFEYNK-----MLLDPPRAG 384 Query: 144 ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 A +V N ++ RI+ + + +R A +V + Sbjct: 385 AQEVCNNIEKFNVKRIVYVSCDTATLARDAGILVNNKDYKLI 426 >gi|145592777|ref|YP_001157074.1| methyltransferase type 11 [Salinispora tropica CNB-440] gi|145302114|gb|ABP52696.1| Methyltransferase type 11 [Salinispora tropica CNB-440] Length = 266 Score = 41.7 bits (97), Expect = 0.17, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 4/84 (4%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSL 87 + LL G+ +LD G G Y+ G+ VI LD+ P V +E + F + Sbjct: 66 CLRLLGEVAGRTVLDVACGPGLYAEELVARGARVIGLDQSPRMVHLCRERV--PSGVFHV 123 Query: 88 FQATFSQLQDYVPDKGVDGVVFDL 111 ++ ++PD+ VD V+F L Sbjct: 124 H--DLAERLHWLPDESVDLVLFAL 145 >gi|18977038|ref|NP_578395.1| nol1-nop2-sun family putative nucleolar protein IV [Pyrococcus furiosus DSM 3638] gi|18892673|gb|AAL80790.1| putative nucleolar protein IV (nol1-nop2-sun family) [Pyrococcus furiosus DSM 3638] Length = 452 Score = 41.7 bits (97), Expect = 0.17, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 33/87 (37%), Gaps = 12/87 (13%) Query: 32 LNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ---- 84 L+P PG+V++D GG + K + A D D + ++D+ + Sbjct: 256 LDPKPGEVVVDLAAAPGGKTTHMAELMKNRGKIFAFDIDKAR----MKRLKDFVSRMGIK 311 Query: 85 -FSLFQATFSQLQDYVPDKGVDGVVFD 110 + + + ++ D V+ D Sbjct: 312 IVKPIVKDARKAPEILGEEVADRVMLD 338 >gi|303232176|ref|ZP_07318879.1| methyltransferase domain protein [Veillonella atypica ACS-049-V-Sch6] gi|302513282|gb|EFL55321.1| methyltransferase domain protein [Veillonella atypica ACS-049-V-Sch6] Length = 191 Score = 41.7 bits (97), Expect = 0.17, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 10/88 (11%) Query: 35 APGKVILDATFGAGGYSRSFC----KMGSNVIALDRDPFAVSCGQETMRDYKEQ----FS 86 V++DAT G G+ + + ++ +D AVS +E + K Q + Sbjct: 20 KSASVVVDATCGN-GHDLLYLAERAQSECHLYGIDIQEQAVSASRELLASKKLQSNVTIT 78 Query: 87 LFQATFSQ-LQDYVPDKGVDGVVFDLGV 113 + L + + +D ++F+LG Sbjct: 79 FLHNSHDIALHQEIKENTIDLIIFNLGY 106 >gi|331266078|ref|YP_004325708.1| hypothetical protein SOR_0705 [Streptococcus oralis Uo5] gi|326682750|emb|CBZ00367.1| conserved hypothetical protein [Streptococcus oralis Uo5] Length = 185 Score = 41.7 bits (97), Expect = 0.17, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 10/91 (10%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82 L +V+ +++DAT G G+ + K+ V A D A+ QE + Sbjct: 12 LAEVV----TKED-IVVDATMGN-GHDTLFLAKLAKQVYAFDIQDKALEKTQERLDQAGM 65 Query: 83 EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 L L +V + G+ F+LG Sbjct: 66 TNAQLILQGHETLDQFVTEAKA-GI-FNLGY 94 >gi|14520982|ref|NP_126457.1| nucleolar protein [Pyrococcus abyssi GE5] gi|5458199|emb|CAB49688.1| Nucleolar protein from the nop2 family [Pyrococcus abyssi GE5] Length = 311 Score = 41.7 bits (97), Expect = 0.17, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 37/100 (37%), Gaps = 10/100 (10%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETMRDYKE-QFS 86 L+P PG+++ D GG + ++ N + A D D + + + Sbjct: 109 ALDPKPGEIVADMAAAPGGKTSYLAQLMENKGVIYAFDVDEDRLKETRINLSRLGVLNVI 168 Query: 87 LFQATFSQLQDYVPDKGVDGVVFDL---GVSSMQIDCGDR 123 LF ++ + + D ++ D G ++ +R Sbjct: 169 LFHSSSLYIDQLGIE--FDKILLDAPCTGSGTIH-KNPER 205 >gi|332522818|ref|ZP_08399070.1| ribosomal RNA large subunit methyltransferase A family protein [Streptococcus porcinus str. Jelinkova 176] gi|332314082|gb|EGJ27067.1| ribosomal RNA large subunit methyltransferase A family protein [Streptococcus porcinus str. Jelinkova 176] Length = 273 Score = 41.7 bits (97), Expect = 0.17, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 46/105 (43%), Gaps = 10/105 (9%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETM 78 H+ LE + + L P ILD G G YSR+ + ++ ++A D ++ + Sbjct: 74 HI---LEAISSYLQPDKNTTILDVACGEGYYSRALAQTPNHQILAFDLSKESILLAAK-- 128 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDR 123 +D + + F ++L + D+ VD ++ D+ S R Sbjct: 129 KDLLNRVTWFVGDLAKLP--LADQSVD-IILDV-FSPAHYQEFQR 169 >gi|298204756|emb|CBI25254.3| unnamed protein product [Vitis vinifera] Length = 310 Score = 41.7 bits (97), Expect = 0.17, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 2/66 (3%) Query: 37 GKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQ 94 G ++D G GG + F KM +V+A+D DP V + Y + F Q Sbjct: 146 GGCVIDCFSGVGGNTIQFAKMCHHVVAIDLDPHKVELAFNNAKIYGVEDYIDFIIGDFFQ 205 Query: 95 LQDYVP 100 L + Sbjct: 206 LASSLK 211 >gi|255027475|ref|ZP_05299461.1| hypothetical protein LmonocytFSL_16008 [Listeria monocytogenes FSL J2-003] Length = 115 Score = 41.7 bits (97), Expect = 0.17, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 8/86 (9%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK--EQFSL 87 G ++DAT G G+ +V+ D A+ +++ Q L Sbjct: 18 VRSGDYVVDATCGN-GHDTLLLAELVGVNGHVLGFDIQQLAIDATNTRLKNAGVSSQVEL 76 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGV 113 A+ +++ +Y K V +F+LG Sbjct: 77 VCASHARIPEY-TSKPVRAAIFNLGY 101 >gi|225443235|ref|XP_002271770.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 248 Score = 41.7 bits (97), Expect = 0.17, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 2/66 (3%) Query: 37 GKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQ 94 G ++D G GG + F KM +V+A+D DP V + Y + F Q Sbjct: 84 GGCVIDCFSGVGGNTIQFAKMCHHVVAIDLDPHKVELAFNNAKIYGVEDYIDFIIGDFFQ 143 Query: 95 LQDYVP 100 L + Sbjct: 144 LASSLK 149 >gi|329766161|ref|ZP_08257720.1| putative RNA methylase [Candidatus Nitrosoarchaeum limnia SFB1] gi|329137432|gb|EGG41709.1| putative RNA methylase [Candidatus Nitrosoarchaeum limnia SFB1] Length = 315 Score = 41.7 bits (97), Expect = 0.17, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 10/104 (9%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRD 80 L +I L+ G+V+ D G G + + G + I LD D +E + Sbjct: 166 LTRSMINLIGLKEGEVVCDPFCGTG---TTLLEAESMGIHAIGLDFDEKMFKISKENLDA 222 Query: 81 YKEQFSLFQATFSQLQDYVPDKGVDGVVFDL--GVSSMQIDCGD 122 + + FSQL + + DG+V DL G +S + + Sbjct: 223 NGYNSKIIRGDFSQLTKMIDE--FDGIVTDLPYGTASKSSENPE 264 >gi|308047743|ref|YP_003911309.1| 16S rRNA m(5)C-967 methyltransferase [Ferrimonas balearica DSM 9799] gi|307629933|gb|ADN74235.1| 16S rRNA m(5)C-967 methyltransferase [Ferrimonas balearica DSM 9799] Length = 441 Score = 41.7 bits (97), Expect = 0.17, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 3/87 (3%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQFSL 87 LLN PG+ +LDA GG S + + ++ALD DP+ ++ Q+ + +L Sbjct: 241 LLNAQPGERVLDACAAPGGKSCHILEQQPQLAELVALDVDPWRLTRVQQNLDRLGLTATL 300 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGVS 114 + Q + + D ++ D S Sbjct: 301 KCGDGTDPQSWWDGQAFDRILLDAPCS 327 >gi|256810827|ref|YP_003128196.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit [Methanocaldococcus fervens AG86] gi|256794027|gb|ACV24696.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit [Methanocaldococcus fervens AG86] Length = 180 Score = 41.7 bits (97), Expect = 0.17, Method: Composition-based stats. Identities = 15/97 (15%), Positives = 38/97 (39%), Gaps = 5/97 (5%) Query: 9 MSSAIHHTIGDHVPVLLEKV----IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIAL 64 M + +P+ E++ I LN V++D G+GG + + V A+ Sbjct: 1 MIPDSEFIRKERIPITKEEIRAVSIGKLNLNKDDVVVDIGCGSGGMTVEIARRCKFVYAI 60 Query: 65 DRDPFAVSCGQETMRDYK-EQFSLFQATFSQLQDYVP 100 D + A++ ++ + + + + + + + Sbjct: 61 DYEEEAINLTKQNLAKFNIKNCQVIMGRAEDILNNLE 97 >gi|306829787|ref|ZP_07462976.1| rRNA methylase [Streptococcus mitis ATCC 6249] gi|304428138|gb|EFM31229.1| rRNA methylase [Streptococcus mitis ATCC 6249] Length = 185 Score = 41.7 bits (97), Expect = 0.18, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 10/91 (10%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83 L +V+ +++DAT G G+ + K+ V A D A+ QE + Sbjct: 12 LAEVV----TKED-IVVDATMGN-GHDTLFLAKLAKQVYAFDIQEQALEKTQERLDQAGM 65 Query: 84 -QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 L L +V + G+ F+LG Sbjct: 66 INAQLILQGHETLDQFVTEAKA-GI-FNLGY 94 >gi|225076548|ref|ZP_03719747.1| hypothetical protein NEIFLAOT_01596 [Neisseria flavescens NRL30031/H210] gi|224952119|gb|EEG33328.1| hypothetical protein NEIFLAOT_01596 [Neisseria flavescens NRL30031/H210] Length = 441 Score = 41.7 bits (97), Expect = 0.18, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 4/92 (4%) Query: 23 VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQE--TMRD 80 V++ + + LLNP G+ I D G G +S K G++V+ ++ + V +E + Sbjct: 281 VMVARAVRLLNPQKGERIADLFCGLGNFSLPLAKSGASVVGIEGADYLVDRARENARLNR 340 Query: 81 YKEQFSL-FQATFSQLQDYVPDKG-VDGVVFD 110 E + F + V G D ++ D Sbjct: 341 CAENITFSVADLFDTDEKIVESWGQFDKMLLD 372 >gi|294010470|ref|YP_003543930.1| ubiquinone/menaquinone biosynthesis methyltransferase [Sphingobium japonicum UT26S] gi|292673800|dbj|BAI95318.1| ubiquinone/menaquinone biosynthesis methyltransferase [Sphingobium japonicum UT26S] Length = 224 Score = 41.7 bits (97), Expect = 0.18, Method: Composition-based stats. Identities = 34/186 (18%), Positives = 64/186 (34%), Gaps = 40/186 (21%) Query: 26 EKVIALLNPAPGKVILDATFGAGGYSRSFC----KMGSNVIALDRDPFAVSCGQETMRDY 81 E ++A L P G+ I+D G G S + + + VI LD D A+ + Sbjct: 31 EAMLAALAPRGGETIVDIGCGTG--SFALLLKRDEPSARVIGLDPDAEALDIARRKAAAM 88 Query: 82 KEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSS---MQIDCGDRGFSFQKSGPLDMRMS 138 Q +P++ D V VSS Q+ PLDM+ Sbjct: 89 VADVDWRQG----FATDLPEQSADAV-----VSSLVLHQM-------------PLDMK-- 124 Query: 139 CSGISASDVVNQANVKDLTR--ILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 A+ + + ++ G ++ R+A + +R T + ++ Sbjct: 125 -----AATLRAMYAILRPGGRLVIADYGRQRGFMRLAFRLTVQRLDGVSDTQPNAEGVLP 179 Query: 197 KTVYFS 202 + + + Sbjct: 180 RLIALA 185 >gi|225024584|ref|ZP_03713776.1| hypothetical protein EIKCOROL_01461 [Eikenella corrodens ATCC 23834] gi|224942735|gb|EEG23944.1| hypothetical protein EIKCOROL_01461 [Eikenella corrodens ATCC 23834] Length = 430 Score = 41.7 bits (97), Expect = 0.18, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 4/91 (4%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCG--QETMRDY 81 L+ + I LL P PG+ I D G G +S G+ VI ++ P + Sbjct: 270 LVARAIQLLQPQPGERIADLFCGLGNFSLPIAAAGAQVIGIEGSPELTERASQNARLNHL 329 Query: 82 KEQFSLFQAT-FSQLQDYVPDKG-VDGVVFD 110 E+ A F + V G D ++ D Sbjct: 330 AERAQFHSADLFQTTEHTVAGWGYFDKILLD 360 >gi|88860599|ref|ZP_01135236.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Pseudoalteromonas tunicata D2] gi|88817194|gb|EAR27012.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Pseudoalteromonas tunicata D2] Length = 429 Score = 41.7 bits (97), Expect = 0.18, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 2/86 (2%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQETMRDYKEQFSLF 88 L+ P G+ ILDA GG + ++ N+ ALD D ++ QE + Q L Sbjct: 239 LMAPQAGERILDACAAPGGKTCHILELADNLAVTALDCDETRLARVQENLSRIGLQAQLL 298 Query: 89 QATFSQLQDYVPDKGVDGVVFDLGVS 114 A + + + D ++ D+ S Sbjct: 299 CADAANPDTWWDKETFDKILLDVPCS 324 >gi|320355149|ref|YP_004196488.1| type 11 methyltransferase [Desulfobulbus propionicus DSM 2032] gi|320123651|gb|ADW19197.1| Methyltransferase type 11 [Desulfobulbus propionicus DSM 2032] Length = 224 Score = 41.7 bits (97), Expect = 0.18, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 2/68 (2%) Query: 29 IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLF 88 + L P PG+ ILDA G G ++ G+ VI +D + ++ +F+ Sbjct: 34 LEFLAPQPGERILDAGCGTGLFTGDVLDRGAMVIGVDLSVPMLDRARKRAA--GPRFTAL 91 Query: 89 QATFSQLQ 96 A L Sbjct: 92 CADMGALP 99 >gi|237748134|ref|ZP_04578614.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13] gi|229379496|gb|EEO29587.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13] Length = 250 Score = 41.7 bits (97), Expect = 0.18, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 30/54 (55%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77 + E V+ LL+P PG+ ILD G G + KMG V+A+D + AV ++ Sbjct: 23 MGEPVLKLLDPKPGERILDMGCGLGVLAEEMVKMGCEVVAIDVNSQAVEATRQR 76 >gi|209885479|ref|YP_002289336.1| dimethyladenosine transferase [Oligotropha carboxidovorans OM5] gi|226732605|sp|B6JGM4|RSMA_OLICO RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|209873675|gb|ACI93471.1| dimethyladenosine transferase [Oligotropha carboxidovorans OM5] Length = 282 Score = 41.7 bits (97), Expect = 0.18, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 6/55 (10%) Query: 42 DATF-----GAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSLFQA 90 D T G GG +R+ G+ VIA++RD A+ +E R Y + + Sbjct: 48 DVTVIEIGPGPGGLTRALLATGAKRVIAVERDERAIPALEEIARRYPGRLEIIHG 102 >gi|322420924|ref|YP_004200147.1| rRNA methylase [Geobacter sp. M18] gi|320127311|gb|ADW14871.1| rRNA methylase [Geobacter sp. M18] Length = 195 Score = 41.7 bits (97), Expect = 0.18, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 6/85 (7%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDYK--EQFSLF 88 PG + +DAT G G + ++ V A D A+S +E + L Sbjct: 26 VRPGDLAVDATCGNGFDTALLAQLAGETGRVWAFDVQARAISATRELLEREGRLANVELL 85 Query: 89 QATFSQLQDYVPDKGVDGVVFDLGV 113 + +L ++VP GV VVF+LG Sbjct: 86 ETGHERLAEFVPQ-GVRAVVFNLGY 109 >gi|254497984|ref|ZP_05110747.1| rRNA methyltransferase (SUN protein) [Legionella drancourtii LLAP12] gi|254352761|gb|EET11533.1| rRNA methyltransferase (SUN protein) [Legionella drancourtii LLAP12] Length = 426 Score = 41.7 bits (97), Expect = 0.18, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 3/90 (3%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCGQETMRDYKEQ 84 ++LL PG +LDA GG + + N+ +ALD DP + QE + Q Sbjct: 230 AVSLLALKPGLRLLDACCAPGGKTCHILETEPNLSACVALDVDPKRLIRVQENLTRLNLQ 289 Query: 85 FSLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 +L Q S + + D ++ D S Sbjct: 290 ATLLQGDASTPTTWWDGQLFDRILLDAPCS 319 >gi|288905978|ref|YP_003431200.1| rRNA methylase [Streptococcus gallolyticus UCN34] gi|288732704|emb|CBI14278.1| Putative rRNA methylase [Streptococcus gallolyticus UCN34] Length = 187 Score = 41.7 bits (97), Expect = 0.18, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 7/90 (7%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-E 83 L +V+ A +DAT G G + + V A D A+ +E + + Sbjct: 13 LAEVLDEQAIA-----VDATMGNGNDTAFLAQHTKEVYAFDVQEQALQSTKERLEKQEIH 67 Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 L + YV + +F+LG Sbjct: 68 NAHLILDGHQHIDHYVNQP-IRAAIFNLGY 96 >gi|261403589|ref|YP_003247813.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit [Methanocaldococcus vulcanius M7] gi|261370582|gb|ACX73331.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit [Methanocaldococcus vulcanius M7] Length = 180 Score = 41.7 bits (97), Expect = 0.18, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 38/97 (39%), Gaps = 5/97 (5%) Query: 9 MSSAIHHTIGDHVPVLLEKV----IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIAL 64 M + + VP+ E++ I LN V++D G+GG + K V A+ Sbjct: 1 MIPDENFIRREGVPITKEEIRAVSIGKLNLNKDDVVVDIGCGSGGMTVEIAKRCKFVYAI 60 Query: 65 DRDPFAVSCGQETMRDYK-EQFSLFQATFSQLQDYVP 100 D A+ Q+ + + + + + + D + Sbjct: 61 DYLDDAIELTQQNLAKFNIKNCQIIKGRAEDVLDKLK 97 >gi|162457317|ref|YP_001619684.1| methyltransferase [Sorangium cellulosum 'So ce 56'] gi|161167899|emb|CAN99204.1| Methyltransferase [Sorangium cellulosum 'So ce 56'] Length = 792 Score = 41.7 bits (97), Expect = 0.18, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 3/78 (3%) Query: 30 ALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQ 89 L G VILD GAGG++ G +V+ D ++ + +D ++ + Q Sbjct: 579 ERLGVEKGAVILDLACGAGGHAIEIASRGYSVVGYDLSLAMLARAADEAQDRGQKLNFLQ 638 Query: 90 ATFSQLQDYVPDKGVDGV 107 +++ ++ DGV Sbjct: 639 G---DMREMTFEETFDGV 653 >gi|163852351|ref|YP_001640394.1| Fmu (Sun) domain-containing protein [Methylobacterium extorquens PA1] gi|163663956|gb|ABY31323.1| Fmu (Sun) domain protein [Methylobacterium extorquens PA1] Length = 459 Score = 41.7 bits (97), Expect = 0.18, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 10/84 (11%) Query: 35 APGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMRDYKEQFSLF--- 88 PG+ ++D G GG S + +++IA D DP ++ E +R Q + Sbjct: 259 KPGETVVDLCAGGGGKSLALAAITGNAAHIIATDADPRRLAPIHERLRRSGAQVEVRTPR 318 Query: 89 --QATFSQLQDYVPDKGVDGVVFD 110 +A L D D VD V+ D Sbjct: 319 TGKARADVLADL--DGTVDRVLVD 340 >gi|116873097|ref|YP_849878.1| methylase protein [Listeria welshimeri serovar 6b str. SLCC5334] gi|116741975|emb|CAK21099.1| methylase protein [Listeria welshimeri serovar 6b str. SLCC5334] Length = 191 Score = 41.7 bits (97), Expect = 0.18, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 8/86 (9%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK--EQFSL 87 PG ++DAT G G+ +V+ D A++ + + + Q L Sbjct: 18 VRPGDYVIDATCGN-GHDTLLLADLVGINGHVLGFDIQQQAINATKTRLENAGVTPQVEL 76 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGV 113 A+ + + Y V +F+LG Sbjct: 77 VCASHAFIPKYATKP-VRAAIFNLGY 101 >gi|109086422|ref|XP_001084320.1| PREDICTED: trimethylguanosine synthase isoform 2 [Macaca mulatta] Length = 855 Score = 41.7 bits (97), Expect = 0.19, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 2/68 (2%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96 V++DA G GG + F G VIA+D DP ++ + Y ++ F L Sbjct: 695 VVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA 754 Query: 97 DYVPDKGV 104 + V Sbjct: 755 ACLKADVV 762 >gi|218531110|ref|YP_002421926.1| Fmu (Sun) domain protein [Methylobacterium chloromethanicum CM4] gi|218523413|gb|ACK83998.1| Fmu (Sun) domain protein [Methylobacterium chloromethanicum CM4] Length = 449 Score = 41.3 bits (96), Expect = 0.19, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 10/84 (11%) Query: 35 APGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMRDYKEQFSLF--- 88 PG+ ++D G GG S + +++IA D DP ++ E +R Q + Sbjct: 249 KPGETVVDLCAGGGGKSLALAAITGNAAHIIATDADPRRLAPIHERLRRSGAQVEVRTPR 308 Query: 89 --QATFSQLQDYVPDKGVDGVVFD 110 +A L D D VD V+ D Sbjct: 309 TGKARADVLADL--DGTVDRVLVD 330 >gi|322390058|ref|ZP_08063593.1| rRNA methylase [Streptococcus parasanguinis ATCC 903] gi|321143185|gb|EFX38628.1| rRNA methylase [Streptococcus parasanguinis ATCC 903] Length = 185 Score = 41.3 bits (96), Expect = 0.19, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 10/91 (10%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82 L +VI V++DAT G G+ + K+ V A D A++ QE + Sbjct: 12 LAEVI----TKED-VVVDATMGN-GHDTVFLAKLAGQVYAFDIQEQALANTQEKLDKLGL 65 Query: 83 EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + L + YV +F+LG Sbjct: 66 QHVQLILDGHQHVDQYVETLK--AAIFNLGY 94 >gi|254562098|ref|YP_003069193.1| SUN-family protein, RNA methyltransferase [Methylobacterium extorquens DM4] gi|254269376|emb|CAX25342.1| putative SUN-family protein, RNA methyltransferase [Methylobacterium extorquens DM4] Length = 449 Score = 41.3 bits (96), Expect = 0.19, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 10/84 (11%) Query: 35 APGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMRDYKEQFSLF--- 88 PG+ ++D G GG S + +++IA D DP ++ E +R Q + Sbjct: 249 KPGETVVDLCAGGGGKSLALAAITGNAAHIIATDADPRRLAPIHERLRRSGAQVEVRTPR 308 Query: 89 --QATFSQLQDYVPDKGVDGVVFD 110 +A L D D VD V+ D Sbjct: 309 TGKARADVLADL--DGTVDRVLVD 330 >gi|184159316|ref|YP_001847655.1| putative tellurite resistance protein-related protein [Acinetobacter baumannii ACICU] gi|332872577|ref|ZP_08440546.1| methyltransferase domain protein [Acinetobacter baumannii 6014059] gi|183210910|gb|ACC58308.1| putative tellurite resistance protein-related protein [Acinetobacter baumannii ACICU] gi|322509227|gb|ADX04681.1| SAM-dependent methyltransferase [Acinetobacter baumannii 1656-2] gi|323519256|gb|ADX93637.1| putative tellurite resistance protein-related protein [Acinetobacter baumannii TCDC-AB0715] gi|332739263|gb|EGJ70121.1| methyltransferase domain protein [Acinetobacter baumannii 6014059] Length = 194 Score = 41.3 bits (96), Expect = 0.19, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 29/77 (37%), Gaps = 3/77 (3%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETM 78 H P+L EK + P V +D GAG S G NV A D A + Sbjct: 13 KHRPIL-EKALGYFPNLPL-VAIDCGCGAGNESAYLLSKGFNVHAFDISIDAQKVCTDRF 70 Query: 79 RDYKEQFSLFQATFSQL 95 +D +F + +F Sbjct: 71 KD-DSKFIFYHESFEDF 86 >gi|167772608|ref|ZP_02444661.1| hypothetical protein ANACOL_03987 [Anaerotruncus colihominis DSM 17241] gi|167665086|gb|EDS09216.1| hypothetical protein ANACOL_03987 [Anaerotruncus colihominis DSM 17241] Length = 190 Score = 41.3 bits (96), Expect = 0.19, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 32/86 (37%), Gaps = 7/86 (8%) Query: 34 PAPGKVILDATFGAGGYSRSFC----KMGSNVIALDRDPFAVSCGQETM--RDYKEQFSL 87 PG +DAT G G+ +F +V+A D AV E + R + Sbjct: 20 VKPGDFCIDATAGR-GHDTAFLCSLVGGSGHVLAFDIQQEAVDSTTELLHTRGFAGIGRA 78 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGV 113 + + + Y + V + F+ G Sbjct: 79 VLDSHANMAAYAAPESVSCITFNFGW 104 >gi|228477135|ref|ZP_04061773.1| SAM-dependent methyltransferase [Streptococcus salivarius SK126] gi|228251154|gb|EEK10325.1| SAM-dependent methyltransferase [Streptococcus salivarius SK126] Length = 182 Score = 41.3 bits (96), Expect = 0.19, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 12/92 (13%) Query: 23 VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82 VL ++ +A +DAT G G + + V A D A+ ++ + D + Sbjct: 16 VLDDESVA----------VDATMGNGNDTAFLAGLAKKVYAFDVQEQALEKTRQRLSDLE 65 Query: 83 -EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 E L L YV + + +F+LG Sbjct: 66 IENAELILDGHENLDHYVTEP-IRAAIFNLGY 96 >gi|188535245|ref|YP_001909042.1| 16S rRNA methyltransferase B [Erwinia tasmaniensis Et1/99] gi|224493254|sp|B2VK95|RSMB_ERWT9 RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|188030287|emb|CAO98176.1| rRNA methylase Sun [Erwinia tasmaniensis Et1/99] Length = 429 Score = 41.3 bits (96), Expect = 0.19, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85 +ALL P G+ ILD GG + + V+A+D D ++ E ++ Q Sbjct: 238 CVALLAPRDGEQILDLCAAPGGKTTHILEAAPQAKVMAVDVDAQRLARVSENLQRLTMQA 297 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + Q + D D ++ D S Sbjct: 298 EVKQGDGRTPAAWCGDTQFDRILLDAPCS 326 >gi|15895826|ref|NP_349175.1| rRNA methylase [Clostridium acetobutylicum ATCC 824] gi|15025588|gb|AAK80515.1|AE007754_13 Possible rRNA methylase (SAM-dependent methyltransferase superfamily), YTQB B.subtilis [Clostridium acetobutylicum ATCC 824] gi|325509978|gb|ADZ21614.1| putative rRNA methylase (SAM-dependent methyltransferase superfamily) [Clostridium acetobutylicum EA 2018] Length = 188 Score = 41.3 bits (96), Expect = 0.19, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 28/84 (33%), Gaps = 6/84 (7%) Query: 35 APGKVILDATFGAGGYS---RSFCKMGSNVIALDRDPFAVSCGQETMRDYKE--QFSLFQ 89 PG +D T G G + K V A D A+ + + L + Sbjct: 20 KPGDTAVDCTAGNGNDTDFLCEIVKDKGRVYAFDIQEKALLSTKRKLEASGNIKIVKLIK 79 Query: 90 ATFSQLQDYVPDKGVDGVVFDLGV 113 L Y+ + + VF+LG Sbjct: 80 DGHENLDKYIRE-NIKAAVFNLGY 102 >gi|238797213|ref|ZP_04640714.1| Ribosomal RNA small subunit methyltransferase B [Yersinia mollaretii ATCC 43969] gi|238718850|gb|EEQ10665.1| Ribosomal RNA small subunit methyltransferase B [Yersinia mollaretii ATCC 43969] Length = 431 Score = 41.3 bits (96), Expect = 0.19, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85 + LL+P G+ ILD GG + + +V+A+D D + +E ++ K Sbjct: 238 CVDLLDPHNGEQILDLCAAPGGKTTHILEAAPKAHVLAVDIDEQRLDRVKENLQRLKLHA 297 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + +D+ D+ D ++ D S Sbjct: 298 VVRVGDGRTPEDWCGDQQFDRILLDAPCS 326 >gi|225850076|ref|YP_002730310.1| dimethyladenosine transferase [Persephonella marina EX-H1] gi|254807878|sp|C0QUE5|RSMA_PERMH RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|225645312|gb|ACO03498.1| dimethyladenosine transferase [Persephonella marina EX-H1] Length = 265 Score = 41.3 bits (96), Expect = 0.20, Method: Composition-based stats. Identities = 11/70 (15%), Positives = 26/70 (37%), Gaps = 2/70 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYKEQFS 86 ++ L+ +++ G G + + V ++ D +E +D+K F Sbjct: 24 IVECLDIKEDDTVVEIGVGTGQLTEEILRRNPKIVYGIEIDKTVYPIIEERFKDFK-NFV 82 Query: 87 LFQATFSQLQ 96 L + F + Sbjct: 83 LIKEDFFDVD 92 >gi|220910008|ref|YP_002485319.1| type 11 methyltransferase [Cyanothece sp. PCC 7425] gi|219866619|gb|ACL46958.1| Methyltransferase type 11 [Cyanothece sp. PCC 7425] Length = 254 Score = 41.3 bits (96), Expect = 0.20, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 4/50 (8%) Query: 29 IALLNPAPGKVILDATFGAG-GY-SRSFCKMGSNVIALDRDPFAVSCGQE 76 + LL+P G+ ILD G G G+ + G++V+ +D DP ++ Q+ Sbjct: 26 LQLLDPQSGEDILD--LGCGTGHLTAKIASSGASVLGIDADPAMIAAAQQ 73 >gi|165936548|ref|ZP_02225116.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis biovar Orientalis str. IP275] gi|166213307|ref|ZP_02239342.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis biovar Antiqua str. B42003004] gi|167399475|ref|ZP_02304999.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419402|ref|ZP_02311155.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425618|ref|ZP_02317371.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis biovar Mediaevalis str. K1973002] gi|270488262|ref|ZP_06205336.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis KIM D27] gi|294502314|ref|YP_003566376.1| hypothetical protein YPZ3_0204 [Yersinia pestis Z176003] gi|165915664|gb|EDR34273.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis biovar Orientalis str. IP275] gi|166205605|gb|EDR50085.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis biovar Antiqua str. B42003004] gi|166963396|gb|EDR59417.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051979|gb|EDR63387.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055308|gb|EDR65102.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis biovar Mediaevalis str. K1973002] gi|262360394|gb|ACY57115.1| hypothetical protein YPD4_0206 [Yersinia pestis D106004] gi|262364344|gb|ACY60901.1| hypothetical protein YPD8_0211 [Yersinia pestis D182038] gi|270336766|gb|EFA47543.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis KIM D27] gi|294352773|gb|ADE63114.1| hypothetical protein YPZ3_0204 [Yersinia pestis Z176003] Length = 431 Score = 41.3 bits (96), Expect = 0.20, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85 + LL+P G+ ILD GG + + +V+A+D D +S +E ++ + Q Sbjct: 240 CVDLLDPQNGEQILDLCAAPGGKTTHILEAAPKAHVLAVDIDEQRLSRVKENLQRLQLQA 299 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + + D+ D ++ D S Sbjct: 300 VVRVGDGRAPDTWCGDQQFDRILLDAPCS 328 >gi|162420599|ref|YP_001605204.1| 16S rRNA methyltransferase B [Yersinia pestis Angola] gi|162353414|gb|ABX87362.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis Angola] Length = 435 Score = 41.3 bits (96), Expect = 0.20, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85 + LL+P G+ ILD GG + + +V+A+D D +S +E ++ + Q Sbjct: 244 CVDLLDPQNGEQILDLCAAPGGKTTHILEAAPKAHVLAVDIDEQRLSRVKENLQRLQLQA 303 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + + D+ D ++ D S Sbjct: 304 VVRVGDGRAPDTWCGDQQFDRILLDAPCS 332 >gi|145633872|ref|ZP_01789593.1| methionyl-tRNA formyltransferase [Haemophilus influenzae 3655] gi|144985244|gb|EDJ92087.1| methionyl-tRNA formyltransferase [Haemophilus influenzae 3655] Length = 265 Score = 41.3 bits (96), Expect = 0.20, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 2/82 (2%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88 LL P + ILDA GG + ++ NVIALD + + +E + +Q + Sbjct: 67 LLEPKNEEWILDACAAPGGKTTHILELAPQANVIALDVESHRLKRVEENLERLNQQAIVV 126 Query: 89 QATFSQLQDYVPDKGVDGVVFD 110 SQ +++ + G V FD Sbjct: 127 CGDASQPDEWLAEIGKSAVKFD 148 >gi|224493303|sp|A9R925|RSMB_YERPG RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB Length = 429 Score = 41.3 bits (96), Expect = 0.20, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85 + LL+P G+ ILD GG + + +V+A+D D +S +E ++ + Q Sbjct: 238 CVDLLDPQNGEQILDLCAAPGGKTTHILEAAPKAHVLAVDIDEQRLSRVKENLQRLQLQA 297 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + + D+ D ++ D S Sbjct: 298 VVRVGDGRAPDTWCGDQQFDRILLDAPCS 326 >gi|45434953|gb|AAS60514.1| tRNA and rRNA cytosine-C5-methylases [Yersinia pestis biovar Microtus str. 91001] Length = 435 Score = 41.3 bits (96), Expect = 0.20, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85 + LL+P G+ ILD GG + + +V+A+D D +S +E ++ + Q Sbjct: 244 CVDLLDPQNGEQILDLCAAPGGKTTHILEAAPKAHVLAVDIDEQRLSRVKENLQRLQLQA 303 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + + D+ D ++ D S Sbjct: 304 VVRVGDGRAPDTWCGDQQFDRILLDAPCS 332 >gi|254369699|ref|ZP_04985709.1| 23S rRNA (Uracil-5-)-methyltransferase [Francisella tularensis subsp. holarctica FSC022] gi|157122658|gb|EDO66787.1| 23S rRNA (Uracil-5-)-methyltransferase [Francisella tularensis subsp. holarctica FSC022] Length = 449 Score = 41.3 bits (96), Expect = 0.20, Method: Composition-based stats. Identities = 26/162 (16%), Positives = 56/162 (34%), Gaps = 24/162 (14%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83 ++++ I LL+ + I+D G G ++ + VI ++ +P V +ET + Sbjct: 289 MIKRAIELLDISENDSIIDLFCGLGNFTLPISQHAKTVIGVEGEPTMVKRAKETADN--N 346 Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGIS 143 + + L + S + F + K M + Sbjct: 347 NITNVNFYAANLFE-----------------SFEDKEWFNNFEYNK-----MLLDPPRAG 384 Query: 144 ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 A +V N ++ RI+ + + +R A +V + Sbjct: 385 AQEVCNNIEKFNVKRIVYVSCDTAALARDAGILVNTKDYKLI 426 >gi|22127891|ref|NP_671314.1| 16S rRNA methyltransferase B [Yersinia pestis KIM 10] gi|51597957|ref|YP_072148.1| 16S rRNA methyltransferase B [Yersinia pseudotuberculosis IP 32953] gi|108809224|ref|YP_653140.1| 16S rRNA methyltransferase B [Yersinia pestis Antiqua] gi|108813989|ref|YP_649756.1| 16S rRNA methyltransferase B [Yersinia pestis Nepal516] gi|145597481|ref|YP_001161556.1| 16S rRNA methyltransferase B [Yersinia pestis Pestoides F] gi|150260712|ref|ZP_01917440.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis CA88-4125] gi|153947745|ref|YP_001402832.1| 16S rRNA methyltransferase B [Yersinia pseudotuberculosis IP 31758] gi|161511468|ref|NP_991637.2| 16S rRNA methyltransferase B [Yersinia pestis biovar Microtus str. 91001] gi|165927896|ref|ZP_02223728.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis biovar Orientalis str. F1991016] gi|166010534|ref|ZP_02231432.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis biovar Antiqua str. E1979001] gi|167468244|ref|ZP_02332948.1| 16S rRNA methyltransferase B [Yersinia pestis FV-1] gi|170022575|ref|YP_001719080.1| 16S rRNA methyltransferase B [Yersinia pseudotuberculosis YPIII] gi|186897153|ref|YP_001874265.1| 16S rRNA methyltransferase B [Yersinia pseudotuberculosis PB1/+] gi|218927446|ref|YP_002345321.1| 16S rRNA methyltransferase B [Yersinia pestis CO92] gi|229836278|ref|ZP_04456445.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis Pestoides A] gi|229840098|ref|ZP_04460257.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842180|ref|ZP_04462335.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis biovar Orientalis str. India 195] gi|229904520|ref|ZP_04519631.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis Nepal516] gi|46396984|sp|Q8ZJ81|RSMB_YERPE RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|81638254|sp|Q664V2|RSMB_YERPS RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|122979388|sp|Q1C2X7|RSMB_YERPA RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|122979880|sp|Q1CCX4|RSMB_YERPN RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|224493292|sp|A7FNK4|RSMB_YERP3 RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|224493293|sp|B2K506|RSMB_YERPB RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|224493294|sp|A4TH21|RSMB_YERPP RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|224493295|sp|B1JJH6|RSMB_YERPY RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|21961028|gb|AAM87565.1|AE014004_3 hypothetical protein y4021 [Yersinia pestis KIM 10] gi|51591239|emb|CAH22905.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP 32953] gi|108777637|gb|ABG20156.1| hypothetical protein YPN_3829 [Yersinia pestis Nepal516] gi|108781137|gb|ABG15195.1| hypothetical protein YPA_3233 [Yersinia pestis Antiqua] gi|115346057|emb|CAL18923.1| conserved hypothetical protein [Yersinia pestis CO92] gi|145209177|gb|ABP38584.1| hypothetical protein YPDSF_0162 [Yersinia pestis Pestoides F] gi|149290120|gb|EDM40197.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis CA88-4125] gi|152959240|gb|ABS46701.1| ribosomal RNA small subunit methyltransferase B [Yersinia pseudotuberculosis IP 31758] gi|165920172|gb|EDR37473.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis biovar Orientalis str. F1991016] gi|165990624|gb|EDR42925.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis biovar Antiqua str. E1979001] gi|169749109|gb|ACA66627.1| sun protein [Yersinia pseudotuberculosis YPIII] gi|186700179|gb|ACC90808.1| sun protein [Yersinia pseudotuberculosis PB1/+] gi|229678638|gb|EEO74743.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis Nepal516] gi|229690490|gb|EEO82544.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis biovar Orientalis str. India 195] gi|229696464|gb|EEO86511.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706346|gb|EEO92353.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis Pestoides A] gi|320013373|gb|ADV96944.1| 16S rRNA methyltransferase B [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 429 Score = 41.3 bits (96), Expect = 0.20, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85 + LL+P G+ ILD GG + + +V+A+D D +S +E ++ + Q Sbjct: 238 CVDLLDPQNGEQILDLCAAPGGKTTHILEAAPKAHVLAVDIDEQRLSRVKENLQRLQLQA 297 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + + D+ D ++ D S Sbjct: 298 VVRVGDGRAPDTWCGDQQFDRILLDAPCS 326 >gi|299744837|ref|XP_002910844.1| R,R-butanediol dehydrogenase [Coprinopsis cinerea okayama7#130] gi|298406311|gb|EFI27350.1| R,R-butanediol dehydrogenase [Coprinopsis cinerea okayama7#130] Length = 452 Score = 41.3 bits (96), Expect = 0.20, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 1/60 (1%) Query: 53 SFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLG 112 + K S VI +D+ P + ++++ F + +++++ + +KGVD V D G Sbjct: 235 ALLKGASKVIGIDQVPERLEFAEQSLGIETINFKEHKDVPARIREIIGEKGVD-VCIDAG 293 >gi|187735461|ref|YP_001877573.1| rRNA methylase [Akkermansia muciniphila ATCC BAA-835] gi|187425513|gb|ACD04792.1| putative rRNA methylase [Akkermansia muciniphila ATCC BAA-835] Length = 235 Score = 41.3 bits (96), Expect = 0.20, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 9/87 (10%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK---EQFS 86 +PG ++DAT G G+ F V A D A+ +E + Sbjct: 65 VSPGDAVVDATAGN-GHDTVFLARLVGTSGQVHAFDVQEEAIRATRERLEKEGLLTPSVQ 123 Query: 87 LFQATFSQLQDYVPDKGVDGVVFDLGV 113 L A+ +L + V V +VF+LG Sbjct: 124 LHLASHDRLAELVGGP-VKAIVFNLGY 149 >gi|160873155|ref|YP_001552471.1| sun protein [Shewanella baltica OS195] gi|160858677|gb|ABX47211.1| sun protein [Shewanella baltica OS195] gi|315265380|gb|ADT92233.1| sun protein [Shewanella baltica OS678] Length = 428 Score = 41.3 bits (96), Expect = 0.20, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 2/86 (2%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88 LL P ++ILDA GG S ++ ++A+D D + Q+ + + L Sbjct: 235 LLTPQANELILDACAAPGGKSCHLLELEPSIKLVAVDFDAKRLERVQQNLDRLSLKAELI 294 Query: 89 QATFSQLQDYVPDKGVDGVVFDLGVS 114 + + + D ++ D S Sbjct: 295 HGDAANIDSWWQGGQFDRILLDAPCS 320 >gi|332213797|ref|XP_003256017.1| PREDICTED: trimethylguanosine synthase [Nomascus leucogenys] Length = 855 Score = 41.3 bits (96), Expect = 0.20, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 2/68 (2%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96 V++DA G GG + F G VIA+D DP ++ + Y ++ F L Sbjct: 695 VVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA 754 Query: 97 DYVPDKGV 104 + V Sbjct: 755 SCLKADVV 762 >gi|297682885|ref|XP_002819134.1| PREDICTED: trimethylguanosine synthase-like [Pongo abelii] Length = 853 Score = 41.3 bits (96), Expect = 0.20, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 2/68 (2%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96 V++DA G GG + F G VIA+D DP ++ + Y ++ F L Sbjct: 693 VVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA 752 Query: 97 DYVPDKGV 104 + V Sbjct: 753 SCLKADVV 760 >gi|114620166|ref|XP_001153796.1| PREDICTED: trimethylguanosine synthase isoform 1 [Pan troglodytes] Length = 855 Score = 41.3 bits (96), Expect = 0.20, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 2/68 (2%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96 V++DA G GG + F G VIA+D DP ++ + Y ++ F L Sbjct: 695 VVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA 754 Query: 97 DYVPDKGV 104 + V Sbjct: 755 SCLKADVV 762 >gi|241236668|ref|XP_002400913.1| 26S protease regulatory subunit 6A, putative [Ixodes scapularis] gi|215496094|gb|EEC05735.1| 26S protease regulatory subunit 6A, putative [Ixodes scapularis] Length = 1014 Score = 41.3 bits (96), Expect = 0.21, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 14/100 (14%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96 +++DA GAGG + F + VIA+D DP + ++ Y ++ F +L Sbjct: 858 IVIDAFCGAGGNTIQFALVSRLVIAVDIDPKKIELARKNAAVYGVLDKIQFVLGDFLELA 917 Query: 97 DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 + D+ SM + + +S D+R Sbjct: 918 PRLR--------GDVVFLSMPWGGPE----YLQSDSFDLR 945 >gi|227354905|ref|ZP_03839319.1| ribosomal RNA small subunit methyltransferase B [Proteus mirabilis ATCC 29906] gi|227164987|gb|EEI49826.1| ribosomal RNA small subunit methyltransferase B [Proteus mirabilis ATCC 29906] Length = 422 Score = 41.3 bits (96), Expect = 0.21, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 37/91 (40%), Gaps = 2/91 (2%) Query: 26 EKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKE 83 ++ LL P + ILD GG + ++ +V+A+D D ++ +E + K Sbjct: 236 QRCAELLAPQNNEQILDLCAAPGGKTTHILEIAPKAHVLAIDIDEQRLARVKENLNRLKL 295 Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 ++ + + + D ++ D S Sbjct: 296 HATVKSGDGRYPEQWCANMQFDRILLDAPCS 326 >gi|197287099|ref|YP_002152971.1| 16S rRNA methyltransferase B [Proteus mirabilis HI4320] gi|224493257|sp|B4F1L5|RSMB_PROMH RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|194684586|emb|CAR46442.1| ribosomal RNA small subunit methyltransferase B [Proteus mirabilis HI4320] Length = 422 Score = 41.3 bits (96), Expect = 0.21, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 37/91 (40%), Gaps = 2/91 (2%) Query: 26 EKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKE 83 ++ LL P + ILD GG + ++ +V+A+D D ++ +E + K Sbjct: 236 QRCAELLAPQNNEQILDLCAAPGGKTTHILEIAPKAHVLAIDIDEQRLARVKENLNRLKL 295 Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 ++ + + + D ++ D S Sbjct: 296 HATVKSGDGRYPEQWCANMQFDRILLDAPCS 326 >gi|198435713|ref|XP_002131256.1| PREDICTED: similar to hepatocellular carcinoma-associated antigen 137 [Ciona intestinalis] Length = 787 Score = 41.3 bits (96), Expect = 0.21, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 2/68 (2%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96 VI+DA G+GG + F V+A+D DP + + Y ++ +F + Sbjct: 588 VIVDAFCGSGGNAIQFAFTCEKVLAIDIDPVKLENAKHNAAIYGVEDRIDFICGSFFDIA 647 Query: 97 DYVPDKGV 104 + V Sbjct: 648 PTLKADIV 655 >gi|262041526|ref|ZP_06014723.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259041087|gb|EEW42161.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 434 Score = 41.3 bits (96), Expect = 0.21, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 33/90 (36%), Gaps = 3/90 (3%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82 ++ + L+ P +LD G G ++ ++V+ ++ P V G+E Sbjct: 274 MVRTALEWLDLRPEDRVLDLFCGMGNFTLPLATRAAHVVGVEGVPALVEKGRENSARNGL 333 Query: 83 EQFSLFQATFSQ--LQDYVPDKGVDGVVFD 110 + F + + G D V+ D Sbjct: 334 SNVTFFHENLEEDVTRQAWAKHGFDKVLLD 363 >gi|220929163|ref|YP_002506072.1| rRNA methylase [Clostridium cellulolyticum H10] gi|219999491|gb|ACL76092.1| putative rRNA methylase [Clostridium cellulolyticum H10] Length = 188 Score = 41.3 bits (96), Expect = 0.21, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 38/94 (40%), Gaps = 9/94 (9%) Query: 26 EKVIALLNPAPGKVILDATFGAGGYSRSFCK----MGSNVIALDRDPFAVSCGQETMRDY 81 ++++ + G +++DAT G G+ +F G V + D A++ + + Sbjct: 12 HEIVSRVVCN-GDIVVDATAGN-GHDTAFLAKLVGAGGLVYSFDIQESALNTTRNKLEAE 69 Query: 82 K--EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + +L + YV + +F+LG Sbjct: 70 NLLNRVNLIHDGHQNMMKYVNKP-IKAAMFNLGY 102 >gi|332159134|ref|YP_004424413.1| sun protein (fmu protein) [Pyrococcus sp. NA2] gi|331034597|gb|AEC52409.1| sun protein (fmu protein) [Pyrococcus sp. NA2] Length = 450 Score = 41.3 bits (96), Expect = 0.22, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 15/96 (15%) Query: 28 VIALLNPAPGKVILDA-------TFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRD 80 V +LNP PG+ +LD TF ++ + + ++A+D + +E M+ Sbjct: 253 VAHVLNPEPGERVLDLAAAPGSKTF----HAAALMENKGEIVAVDYSYDRLMKMKERMKI 308 Query: 81 YK-EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSS 115 + L + Q ++ D V+ D SS Sbjct: 309 LGVKNVKLVH---ADGQSFLDKDKFDKVILDAPCSS 341 >gi|270292446|ref|ZP_06198657.1| SAM-dependent methyltransferase, MraW methylase family [Streptococcus sp. M143] gi|270278425|gb|EFA24271.1| SAM-dependent methyltransferase, MraW methylase family [Streptococcus sp. M143] Length = 185 Score = 41.3 bits (96), Expect = 0.22, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 10/91 (10%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82 L +V+ +++DAT G G+ + K+ V A D A+ QE + Sbjct: 12 LAEVV-----TQDDIVVDATMGN-GHDTLFLAKLAKQVYAFDIQEQALEKTQERLYQAGM 65 Query: 83 EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 L L +V + G+ F+LG Sbjct: 66 TNAQLILQGHETLDQFVTEAKA-GI-FNLGY 94 >gi|238752659|ref|ZP_04614130.1| Ribosomal RNA small subunit methyltransferase B [Yersinia rohdei ATCC 43380] gi|238709086|gb|EEQ01333.1| Ribosomal RNA small subunit methyltransferase B [Yersinia rohdei ATCC 43380] Length = 429 Score = 41.3 bits (96), Expect = 0.22, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 38/89 (42%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85 + LL+P G+ ILD GG + + +V+A+D D +S +E ++ K Sbjct: 238 CVDLLSPQNGEQILDLCAAPGGKTTHILEAAPKAHVLAVDIDEQRLSRVKENLQRLKLHA 297 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + ++ ++ D ++ D S Sbjct: 298 DVRVGDGRTPDEWCGNQQFDRILLDAPCS 326 >gi|208779007|ref|ZP_03246353.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Francisella novicida FTG] gi|208744807|gb|EDZ91105.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Francisella novicida FTG] Length = 449 Score = 41.3 bits (96), Expect = 0.22, Method: Composition-based stats. Identities = 26/162 (16%), Positives = 56/162 (34%), Gaps = 24/162 (14%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83 ++++ I LL+ + I+D G G ++ + VI ++ +P V +ET + Sbjct: 289 MIQRAIELLDISENDSIIDLFCGLGNFTLPISQHAKTVIGVEGEPTMVKRAKETADN--N 346 Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGIS 143 + + L + S + F + K M + Sbjct: 347 NITNVNFYAANLFE-----------------SFEDKEWFNNFEYNK-----MLLDPPRAG 384 Query: 144 ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 A +V N ++ RI+ + + +R A +V + Sbjct: 385 AQEVCNNIEKFNVKRIVYVSCDTATLARDAGILVNTKGYKLI 426 >gi|205374580|ref|ZP_03227375.1| putative rRNA methylase [Bacillus coahuilensis m4-4] Length = 190 Score = 41.3 bits (96), Expect = 0.22, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 39/99 (39%), Gaps = 15/99 (15%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMR 79 LL+ + G +++DAT G G+ + +V A D A+ + ++ Sbjct: 13 LLQSAVD-----KGDIVIDATMGN-GHDTLYLAQLVGEEGHVFAFDIQNEAIDSTRMQLK 66 Query: 80 DYK--EQFSLFQATFSQLQDYVPDK---GVDGVVFDLGV 113 E +L ++D VP V G +F+LG Sbjct: 67 KSGITEGVTLIHRGHEHVKDAVPADVHGNVKGAIFNLGY 105 >gi|309751781|gb|ADO81765.1| 16S rRNA m5C967 methyltransferase [Haemophilus influenzae R2866] Length = 450 Score = 41.3 bits (96), Expect = 0.22, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 2/82 (2%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88 LL P + ILDA GG + ++ NVIALD + + +E + +Q + Sbjct: 253 LLEPKNEEWILDACAAPGGKTTHILELAPQANVIALDVESHRLKRVEENLARLNQQAIVV 312 Query: 89 QATFSQLQDYVPDKGVDGVVFD 110 S+ +++ + G V FD Sbjct: 313 CGDASKPDEWLAEIGKSAVKFD 334 >gi|153001658|ref|YP_001367339.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella baltica OS185] gi|226725387|sp|A6WR37|RUMA_SHEB8 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|151366276|gb|ABS09276.1| RNA methyltransferase, TrmA family [Shewanella baltica OS185] Length = 450 Score = 41.3 bits (96), Expect = 0.22, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 2/89 (2%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82 ++ + + L PAP + ILD G G +S KMG++VI ++ V+ + + Sbjct: 292 MVAQALDWLAPAPDERILDLFCGMGNFSLPLAKMGADVIGVEGVAEMVTQARVNAKANNL 351 Query: 83 EQFSLFQATFSQLQDYVPDKG-VDGVVFD 110 ++ + + S P G +D ++ D Sbjct: 352 DKLTFYHGDLSADLSLEPWMGKIDKLLLD 380 >gi|161529283|ref|YP_001583109.1| RNA methylase [Nitrosopumilus maritimus SCM1] gi|160340584|gb|ABX13671.1| putative RNA methylase [Nitrosopumilus maritimus SCM1] Length = 315 Score = 41.3 bits (96), Expect = 0.22, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 39/91 (42%), Gaps = 8/91 (8%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRD 80 L +I L+ G+ + D G G + + G + I LD D V ++ +++ Sbjct: 166 LTRAMINLVGLKKGETVCDPFCGTG---TTLLEAESMGIHGIGLDFDEKMVEITKKNLKE 222 Query: 81 YKEQFSLFQATFSQLQDYVPDKGVDGVVFDL 111 + + + F ++++ + DG+V D Sbjct: 223 NGYKSRVIHSDFQEIKNMADE--FDGIVTDF 251 >gi|315282619|ref|ZP_07870989.1| methylase protein [Listeria marthii FSL S4-120] gi|313613730|gb|EFR87504.1| methylase protein [Listeria marthii FSL S4-120] Length = 192 Score = 41.3 bits (96), Expect = 0.23, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 8/86 (9%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK--EQFSL 87 G ++DAT G G+ +V+ D A+ + + Q L Sbjct: 18 VRSGDYVVDATCGN-GHDTLLLAELVGVNGHVLGFDIQQLAIDATNTRLENAGASSQVEL 76 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGV 113 A+ +++ +Y K V +F+LG Sbjct: 77 VCASHARIPEY-TSKPVRAAIFNLGY 101 >gi|288931958|ref|YP_003436018.1| RNA methylase, NOL1/NOP2/sun family [Ferroglobus placidus DSM 10642] gi|288894206|gb|ADC65743.1| RNA methylase, NOL1/NOP2/sun family [Ferroglobus placidus DSM 10642] Length = 446 Score = 41.3 bits (96), Expect = 0.23, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 34/84 (40%), Gaps = 4/84 (4%) Query: 31 LLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ-FS 86 LL+P PG+V++D GG + K + A D D + +E + + Sbjct: 249 LLDPKPGEVVVDLCAAPGGKTLHMAELMKNRGVIHAFDIDELRLKRMEELIERCGIRIVK 308 Query: 87 LFQATFSQLQDYVPDKGVDGVVFD 110 +++ + + + D V+ D Sbjct: 309 IYKKDARKATKILGESVADKVMLD 332 >gi|229845581|ref|ZP_04465708.1| sun protein [Haemophilus influenzae 6P18H1] gi|229811516|gb|EEP47218.1| sun protein [Haemophilus influenzae 6P18H1] Length = 450 Score = 41.3 bits (96), Expect = 0.23, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 2/82 (2%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88 LL P + ILDA GG + ++ NVIALD + + +E + +Q + Sbjct: 253 LLEPKNEEWILDACAAPGGKTTHILELAPQANVIALDVESHRLKRVEENLERLNQQAIVV 312 Query: 89 QATFSQLQDYVPDKGVDGVVFD 110 SQ +++ + G V FD Sbjct: 313 CGDASQPDEWLAEIGKSAVKFD 334 >gi|145635940|ref|ZP_01791626.1| methionyl-tRNA formyltransferase [Haemophilus influenzae PittAA] gi|145266799|gb|EDK06817.1| methionyl-tRNA formyltransferase [Haemophilus influenzae PittAA] Length = 451 Score = 41.3 bits (96), Expect = 0.23, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 2/82 (2%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88 LL P + ILDA GG + ++ NVIALD + + +E + +Q + Sbjct: 253 LLEPKNEEWILDACAAPGGKTTHILELAPQANVIALDVESHRLKRVEENLERLNQQAIVV 312 Query: 89 QATFSQLQDYVPDKGVDGVVFD 110 SQ +++ + G V FD Sbjct: 313 CGDASQPDEWLAEIGKSAVKFD 334 >gi|323693236|ref|ZP_08107454.1| SAM independent family methyltransferase [Clostridium symbiosum WAL-14673] gi|323502719|gb|EGB18563.1| SAM independent family methyltransferase [Clostridium symbiosum WAL-14673] Length = 240 Score = 41.3 bits (96), Expect = 0.23, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 1/99 (1%) Query: 3 SKSCKTMSSAIHHTIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV 61 K+ + +A+ + H V+ KV LL+P P ILD G G YS + G+++ Sbjct: 17 EKNAQFWDNAMGDKSNEFHREVVRPKVTELLSPNPADYILDIACGNGNYSSYLAQRGASI 76 Query: 62 IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP 100 +A D + + Y +Q A + + + Sbjct: 77 VAFDYSKKMIELAKRRQSQYAKQIEFCVADATNRESILE 115 >gi|290474987|ref|YP_003467871.1| putative methyltransferase [Xenorhabdus bovienii SS-2004] gi|289174304|emb|CBJ81096.1| putative methyltransferase [Xenorhabdus bovienii SS-2004] Length = 271 Score = 41.3 bits (96), Expect = 0.23, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 27/69 (39%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSL 87 VI L G+ ++D G G +S + + G NVI +D + +S + + Sbjct: 55 VINLCGLKSGQYLIDCPCGYGRHSVALREKGINVIGIDVNDEHLSIARRHAEVHNSDVIF 114 Query: 88 FQATFSQLQ 96 + + Sbjct: 115 RKDDMRTFK 123 >gi|240947872|ref|ZP_04752312.1| ribosomal RNA small subunit methyltransferase B [Actinobacillus minor NM305] gi|240297834|gb|EER48270.1| ribosomal RNA small subunit methyltransferase B [Actinobacillus minor NM305] Length = 444 Score = 41.3 bits (96), Expect = 0.23, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 3/88 (3%) Query: 30 ALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSL 87 LL+ G++ILDA GG + + VIALD + ++ +E + ++ ++ Sbjct: 248 ELLDAQNGELILDACAAPGGKTTHILEKAPQAKVIALDIEEARLARVKENLARLNQRATV 307 Query: 88 FQATFSQLQDYVPD-KGVDGVVFDLGVS 114 SQ + ++ + D ++ D S Sbjct: 308 ICGDASQPEQWLDNGVMFDRILLDAPCS 335 >gi|167757784|ref|ZP_02429911.1| hypothetical protein CLOSCI_00115 [Clostridium scindens ATCC 35704] gi|167769822|ref|ZP_02441875.1| hypothetical protein ANACOL_01156 [Anaerotruncus colihominis DSM 17241] gi|317500622|ref|ZP_07958841.1| SAM independent family methyltransferase [Lachnospiraceae bacterium 8_1_57FAA] gi|323487600|ref|ZP_08092890.1| SAM independent family methyltransferase [Clostridium symbiosum WAL-14163] gi|167664666|gb|EDS08796.1| hypothetical protein CLOSCI_00115 [Clostridium scindens ATCC 35704] gi|167668183|gb|EDS12313.1| hypothetical protein ANACOL_01156 [Anaerotruncus colihominis DSM 17241] gi|316897940|gb|EFV19992.1| SAM independent family methyltransferase [Lachnospiraceae bacterium 8_1_57FAA] gi|323399099|gb|EGA91507.1| SAM independent family methyltransferase [Clostridium symbiosum WAL-14163] Length = 255 Score = 41.3 bits (96), Expect = 0.23, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 1/99 (1%) Query: 3 SKSCKTMSSAIHHTIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV 61 K+ + +A+ + H V+ KV LL+P P ILD G G YS + G+++ Sbjct: 32 EKNAQFWDNAMGDKSNEFHREVVRPKVTELLSPNPADYILDIACGNGNYSSYLAQRGASI 91 Query: 62 IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP 100 +A D + + Y +Q A + + + Sbjct: 92 VAFDYSKKMIELAKRRQSQYAKQIEFCVADATNRESILE 130 >gi|16803702|ref|NP_465187.1| hypothetical protein lmo1662 [Listeria monocytogenes EGD-e] gi|224503672|ref|ZP_03671979.1| hypothetical protein LmonFR_14400 [Listeria monocytogenes FSL R2-561] gi|16411098|emb|CAC99740.1| lmo1662 [Listeria monocytogenes EGD-e] Length = 191 Score = 41.3 bits (96), Expect = 0.23, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 8/86 (9%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK--EQFSL 87 G ++DAT G G+ +V+ D A+ + + Q L Sbjct: 18 VRSGDYVVDATCGN-GHDTLLLAELVGINGHVLGFDIQQLAIDATNTRLENAGVSSQVEL 76 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGV 113 A+ +++ +Y K V +F+LG Sbjct: 77 VCASHARIPEY-TSKPVRAAIFNLGY 101 >gi|83310707|ref|YP_420971.1| SAM-dependent methyltransferase [Magnetospirillum magneticum AMB-1] gi|82945548|dbj|BAE50412.1| SAM-dependent methyltransferase [Magnetospirillum magneticum AMB-1] Length = 177 Score = 41.3 bits (96), Expect = 0.23, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 6/54 (11%) Query: 30 ALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83 A L P G +LD G G ++R F G NV ALDRD Q + + E Sbjct: 18 AALVP-EGGTVLDLACGGGRHARLFLDRGHNVTALDRD-----IAQARLAEGAE 65 >gi|18977637|ref|NP_578994.1| nol1-nop2-sun family nucleolar protein II [Pyrococcus furiosus DSM 3638] gi|18893359|gb|AAL81389.1| putative nucleolar protein II (nol1-nop2-sun family) [Pyrococcus furiosus DSM 3638] Length = 450 Score = 41.3 bits (96), Expect = 0.23, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 40/95 (42%), Gaps = 13/95 (13%) Query: 28 VIALLNPAPGKVILDA-------TFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRD 80 V +L+P PG+ +LD TF ++ + + ++A+D + +E M+ Sbjct: 253 VAHVLSPEPGERVLDLAAAPGSKTF----HAAALMENKGEIVAVDYSYERLVRMKERMKK 308 Query: 81 YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSS 115 + ++ Q Y+ + D ++ D SS Sbjct: 309 LG--VKNVKLVYADGQSYIDKEKFDKIILDAPCSS 341 >gi|325136027|gb|EGC58637.1| putative rRNA methylase [Neisseria meningitidis M0579] Length = 188 Score = 41.3 bits (96), Expect = 0.24, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 7/83 (8%) Query: 36 PGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQA 90 G LD T G G+ F V A D P A+S + +++ + E L Sbjct: 20 EGGNALDGTAGN-GHDTLFLAQTAGIRGKVWAFDIQPQALSRTRCRLKEARYENVQLILD 78 Query: 91 TFSQLQDYVPDKGVDGVVFDLGV 113 L+ YV + ++ +F+ G Sbjct: 79 GHENLKQYVSEP-LNAAIFNFGW 100 >gi|304387944|ref|ZP_07370117.1| rRNA methyltransferase [Neisseria meningitidis ATCC 13091] gi|304338041|gb|EFM04178.1| rRNA methyltransferase [Neisseria meningitidis ATCC 13091] gi|325131797|gb|EGC54497.1| putative rRNA methylase [Neisseria meningitidis M6190] gi|325133737|gb|EGC56393.1| putative rRNA methylase [Neisseria meningitidis M13399] gi|325137847|gb|EGC60422.1| putative rRNA methylase [Neisseria meningitidis ES14902] gi|325197969|gb|ADY93425.1| putative rRNA methylase [Neisseria meningitidis G2136] Length = 188 Score = 41.3 bits (96), Expect = 0.24, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 7/83 (8%) Query: 36 PGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQA 90 G LD T G G+ F V A D P A+S + +++ + E L Sbjct: 20 EGGNALDGTAGN-GHDTLFLAQTAGIRGKVWAFDIQPQALSRTRCRLKEARYENVQLILD 78 Query: 91 TFSQLQDYVPDKGVDGVVFDLGV 113 L+ YV + ++ +F+ G Sbjct: 79 GHENLKQYVSEP-LNAAIFNFGW 100 >gi|261392882|emb|CAX50463.1| putative rRNA methyltransferase [Neisseria meningitidis 8013] Length = 188 Score = 41.3 bits (96), Expect = 0.24, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 7/83 (8%) Query: 36 PGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQA 90 G LD T G G+ F V A D P A+S + +++ + E L Sbjct: 20 EGGNALDGTAGN-GHDTLFLAQTAGIRGKVWAFDIQPQALSRTRCRLKEARYENVQLILD 78 Query: 91 TFSQLQDYVPDKGVDGVVFDLGV 113 L+ YV + ++ +F+ G Sbjct: 79 GHENLKQYVSEP-LNAAIFNFGW 100 >gi|254674314|emb|CBA10098.1| conserved hypothetical protein [Neisseria meningitidis alpha275] gi|316983733|gb|EFV62714.1| rRNA methylase family protein [Neisseria meningitidis H44/76] gi|325200565|gb|ADY96020.1| putative rRNA methylase [Neisseria meningitidis H44/76] Length = 188 Score = 41.3 bits (96), Expect = 0.24, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 7/83 (8%) Query: 36 PGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQA 90 G LD T G G+ F V A D P A+S + +++ + E L Sbjct: 20 EGGNALDGTAGN-GHDTLFLAQTAGIRGKVWAFDIQPQALSRTRCRLKEARYENVQLILD 78 Query: 91 TFSQLQDYVPDKGVDGVVFDLGV 113 L+ YV + ++ +F+ G Sbjct: 79 GHENLKQYVSEP-LNAAIFNFGW 100 >gi|254669738|emb|CBA03926.1| conserved hypothetical protein [Neisseria meningitidis alpha153] gi|325144213|gb|EGC66520.1| putative rRNA methylase [Neisseria meningitidis M01-240013] gi|325206408|gb|ADZ01861.1| putative rRNA methylase [Neisseria meningitidis M04-240196] Length = 188 Score = 41.3 bits (96), Expect = 0.24, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 7/83 (8%) Query: 36 PGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQA 90 G LD T G G+ F V A D P A+S + +++ + E L Sbjct: 20 EGGNALDGTAGN-GHDTLFLAQTAGIRGKVWAFDIQPQALSRTRCRLKEARYENVQLILD 78 Query: 91 TFSQLQDYVPDKGVDGVVFDLGV 113 L+ YV + ++ +F+ G Sbjct: 79 GHENLKQYVSEP-LNAAIFNFGW 100 >gi|254804629|ref|YP_003082850.1| putative rRNA methylase [Neisseria meningitidis alpha14] gi|254668171|emb|CBA04853.1| putative rRNA methylase [Neisseria meningitidis alpha14] gi|325127866|gb|EGC50772.1| putative rRNA methylase [Neisseria meningitidis N1568] Length = 188 Score = 41.3 bits (96), Expect = 0.24, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 7/83 (8%) Query: 36 PGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQA 90 G LD T G G+ F V A D P A+S + +++ + E L Sbjct: 20 EGGNALDGTAGN-GHDTLFLAQTAGIRGKVWAFDIQPQALSRTRCRLKEARYENVQLILD 78 Query: 91 TFSQLQDYVPDKGVDGVVFDLGV 113 L+ YV + ++ +F+ G Sbjct: 79 GHENLKQYVSEP-LNAAIFNFGW 100 >gi|161869691|ref|YP_001598858.1| hypothetical protein NMCC_0711 [Neisseria meningitidis 053442] gi|161595244|gb|ABX72904.1| conserved hypothetical protein [Neisseria meningitidis 053442] Length = 188 Score = 41.3 bits (96), Expect = 0.24, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 7/83 (8%) Query: 36 PGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQA 90 G LD T G G+ F V A D P A+S + +++ + E L Sbjct: 20 EGGNALDGTAGN-GHDTLFLAQTAGIRGKVWAFDIQPQALSRTRCRLKEARYENVQLILD 78 Query: 91 TFSQLQDYVPDKGVDGVVFDLGV 113 L+ YV + ++ +F+ G Sbjct: 79 GHENLKQYVSEP-LNAAIFNFGW 100 >gi|188582359|ref|YP_001925804.1| Fmu (Sun) domain protein [Methylobacterium populi BJ001] gi|179345857|gb|ACB81269.1| Fmu (Sun) domain protein [Methylobacterium populi BJ001] Length = 367 Score = 41.3 bits (96), Expect = 0.24, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 10/84 (11%) Query: 35 APGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMRDYKEQFSLF--- 88 PG+ I+D G GG S + + +IA D DP ++ E +R Q + Sbjct: 166 RPGETIVDLCAGGGGKSLALAAITGNAARLIATDADPRRLAPIHERLRRSGAQVEVRTPR 225 Query: 89 --QATFSQLQDYVPDKGVDGVVFD 110 +A L D D VD V+ D Sbjct: 226 TGKARSDVLADL--DGTVDRVLVD 247 >gi|261856665|ref|YP_003263948.1| sun protein [Halothiobacillus neapolitanus c2] gi|261837134|gb|ACX96901.1| sun protein [Halothiobacillus neapolitanus c2] Length = 437 Score = 41.3 bits (96), Expect = 0.24, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85 V+ LL+ APG+ +LDA GG + + + NV A+D D ++ QE + + Sbjct: 237 VVDLLDLAPGQHVLDACSAPGGKTLAMLQHQPESNVTAVDIDTTRMARVQENLERGQVFA 296 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 L QD+ + D ++ D+ S Sbjct: 297 RLIVGDAGAPQDWWDGQPFDRILADVPCS 325 >gi|120552984|ref|YP_957335.1| sun protein [Marinobacter aquaeolei VT8] gi|120322833|gb|ABM17148.1| 16S rRNA m(5)C-967 methyltransferase [Marinobacter aquaeolei VT8] Length = 433 Score = 41.3 bits (96), Expect = 0.24, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 3/90 (3%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQ 84 LL+ PG+ +LDA GG + + + V+A+D + QE + Sbjct: 235 CTTLLDLQPGQRVLDACAAPGGKTCAILEACGALDEVVAIDESAERLPRVQENLDRLDLH 294 Query: 85 FSLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 +L QA + + + D ++ D+ S Sbjct: 295 ATLTQADAADIDSWWDGTPFDRILLDVPCS 324 >gi|47097507|ref|ZP_00235048.1| conserved hypothetical protein [Listeria monocytogenes str. 1/2a F6854] gi|254829466|ref|ZP_05234153.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165] gi|254898171|ref|ZP_05258095.1| methylase protein [Listeria monocytogenes J0161] gi|254912336|ref|ZP_05262348.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|254936663|ref|ZP_05268360.1| conserved hypothetical protein [Listeria monocytogenes F6900] gi|47014122|gb|EAL05114.1| conserved hypothetical protein [Listeria monocytogenes str. 1/2a F6854] gi|258601881|gb|EEW15206.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165] gi|258609259|gb|EEW21867.1| conserved hypothetical protein [Listeria monocytogenes F6900] gi|293590317|gb|EFF98651.1| conserved hypothetical protein [Listeria monocytogenes J2818] Length = 191 Score = 41.3 bits (96), Expect = 0.24, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 8/86 (9%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK--EQFSL 87 PG ++DAT G G+ +V+ D AV + + + Q L Sbjct: 18 VRPGDYVIDATCGN-GHDTLLLAELVGINGHVLGFDIQQVAVDATKARLENAGVSSQVEL 76 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGV 113 A+ +++ Y + V +F+LG Sbjct: 77 VCASHARIPAY-TSRPVRAAIFNLGY 101 >gi|187932009|ref|YP_001891994.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis subsp. mediasiatica FSC147] gi|187712918|gb|ACD31215.1| RNA methyltransferase, trmA family [Francisella tularensis subsp. mediasiatica FSC147] Length = 449 Score = 40.9 bits (95), Expect = 0.25, Method: Composition-based stats. Identities = 26/162 (16%), Positives = 56/162 (34%), Gaps = 24/162 (14%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83 ++++ I LL+ + I+D G G ++ + VI ++ +P V +ET + Sbjct: 289 MIKRAIELLDISENDSIIDLFCGLGNFTLPISQHAKTVIGVEGEPTMVKRAKETADN--N 346 Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGIS 143 + + L + S + F + K M + Sbjct: 347 NITNVNFYAANLFE-----------------SFEDKEWFNNFEYNK-----MLLDPPRAG 384 Query: 144 ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 A +V N ++ RI+ + + +R A +V + Sbjct: 385 AQEVCNNIEKFNVKRIVYVSCDTAALARDAGILVNTKGYKLI 426 >gi|224456895|ref|ZP_03665368.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis subsp. tularensis MA00-2987] gi|254370321|ref|ZP_04986326.1| hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254874638|ref|ZP_05247348.1| rumA, 23S rRNA (uracil-5-)-methyltransferase [Francisella tularensis subsp. tularensis MA00-2987] gi|151568564|gb|EDN34218.1| hypothetical protein FTBG_00076 [Francisella tularensis subsp. tularensis FSC033] gi|254840637|gb|EET19073.1| rumA, 23S rRNA (uracil-5-)-methyltransferase [Francisella tularensis subsp. tularensis MA00-2987] Length = 449 Score = 40.9 bits (95), Expect = 0.25, Method: Composition-based stats. Identities = 26/162 (16%), Positives = 56/162 (34%), Gaps = 24/162 (14%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83 ++++ I LL+ + I+D G G ++ + VI ++ +P V +ET + Sbjct: 289 MIKRAIELLDISENDSIIDLFCGLGNFTLPISQHAKTVIGVEGEPTMVKRAKETADN--N 346 Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGIS 143 + + L + S + F + K M + Sbjct: 347 NITNVNFYAANLFE-----------------SFEDKEWFNNFEYNK-----MLLDPPRAG 384 Query: 144 ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 A +V N ++ RI+ + + +R A +V + Sbjct: 385 AQEVCNNIEKFNVKRIVYVSCDTAALARDAGILVNTKGYKLI 426 >gi|54112953|gb|AAV29110.1| NT02FT0992 [synthetic construct] Length = 449 Score = 40.9 bits (95), Expect = 0.25, Method: Composition-based stats. Identities = 26/162 (16%), Positives = 56/162 (34%), Gaps = 24/162 (14%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83 ++++ I LL+ + I+D G G ++ + VI ++ +P V +ET + Sbjct: 289 MIKRAIELLDISENDSIIDLFCGLGNFTLPISQHAKTVIGVEGEPTMVKRAKETADN--N 346 Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGIS 143 + + L + S + F + K M + Sbjct: 347 NITNVNFYAANLFE-----------------SFEDKEWFNNFEYNK-----MLLDPPRAG 384 Query: 144 ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 A +V N ++ RI+ + + +R A +V + Sbjct: 385 AQEVCNNIEKFNVKRIVYVSCDTAALARDAGILVNTKGYKLI 426 >gi|89256815|ref|YP_514177.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis subsp. holarctica LVS] gi|115315201|ref|YP_763924.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis subsp. holarctica OSU18] gi|156502981|ref|YP_001429046.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis subsp. holarctica FTNF002-00] gi|167009854|ref|ZP_02274785.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Francisella tularensis subsp. holarctica FSC200] gi|254368098|ref|ZP_04984118.1| 23S rRNA (uracil-5-)-methyltransferase [Francisella tularensis subsp. holarctica 257] gi|290953511|ref|ZP_06558132.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis subsp. holarctica URFT1] gi|295313203|ref|ZP_06803862.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis subsp. holarctica URFT1] gi|122324802|sp|Q0BKU7|RUMA_FRATO RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|122500404|sp|Q2A275|RUMA_FRATH RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|89144646|emb|CAJ79970.1| 23S rRNA (Uracil-5-)-methyltransferase [Francisella tularensis subsp. holarctica LVS] gi|115130100|gb|ABI83287.1| 23S rRNA (uracil-5-)-methyltransferase [Francisella tularensis subsp. holarctica OSU18] gi|134253908|gb|EBA53002.1| 23S rRNA (uracil-5-)-methyltransferase [Francisella tularensis subsp. holarctica 257] gi|156253584|gb|ABU62090.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Francisella tularensis subsp. holarctica FTNF002-00] Length = 449 Score = 40.9 bits (95), Expect = 0.25, Method: Composition-based stats. Identities = 26/162 (16%), Positives = 56/162 (34%), Gaps = 24/162 (14%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83 ++++ I LL+ + I+D G G ++ + VI ++ +P V +ET + Sbjct: 289 MIKRAIELLDISENDSIIDLFCGLGNFTLPISQHAKTVIGVEGEPTMVKRAKETADN--N 346 Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGIS 143 + + L + S + F + K M + Sbjct: 347 NITNVNFYAANLFE-----------------SFEDKEWFNNFEYNK-----MLLDPPRAG 384 Query: 144 ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 A +V N ++ RI+ + + +R A +V + Sbjct: 385 AQEVCNNIEKFNVKRIVYVSCDTAALARDAGILVNTKGYKLI 426 >gi|56707825|ref|YP_169721.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis subsp. tularensis SCHU S4] gi|110670296|ref|YP_666853.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis subsp. tularensis FSC198] gi|81597688|sp|Q5NGX1|RUMA_FRATT RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|122970996|sp|Q14IC3|RUMA_FRAT1 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|56604317|emb|CAG45338.1| 23S rRNA (Uracil-5-)-methyltransferase [Francisella tularensis subsp. tularensis SCHU S4] gi|110320629|emb|CAL08721.1| 23S rRNA (Uracil-5-)-methyltransferase [Francisella tularensis subsp. tularensis FSC198] gi|282159001|gb|ADA78392.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis subsp. tularensis NE061598] Length = 449 Score = 40.9 bits (95), Expect = 0.25, Method: Composition-based stats. Identities = 26/162 (16%), Positives = 56/162 (34%), Gaps = 24/162 (14%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83 ++++ I LL+ + I+D G G ++ + VI ++ +P V +ET + Sbjct: 289 MIKRAIELLDISENDSIIDLFCGLGNFTLPISQHAKTVIGVEGEPTMVKRAKETADN--N 346 Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGIS 143 + + L + S + F + K M + Sbjct: 347 NITNVNFYAANLFE-----------------SFEDKEWFNNFEYNK-----MLLDPPRAG 384 Query: 144 ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 A +V N ++ RI+ + + +R A +V + Sbjct: 385 AQEVCNNIEKFNVKRIVYVSCDTAALARDAGILVNTKGYKLI 426 >gi|297155859|gb|ADI05571.1| precorrin-6Y C5,15-methyltransferase [Streptomyces bingchenggensis BCW-1] Length = 417 Score = 40.9 bits (95), Expect = 0.25, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 34/76 (44%) Query: 29 IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLF 88 +A L P G ++ D G+G + G+ VIA+DRD A R + Q + Sbjct: 263 LARLGPRVGDLVWDIGVGSGAAAVETAGFGAAVIAVDRDRDACERAAALARRFGVQLQVV 322 Query: 89 QATFSQLQDYVPDKGV 104 T Q+ + +P+ V Sbjct: 323 HGTAPQVLEDLPEPDV 338 >gi|68249187|ref|YP_248299.1| SUN protein [Haemophilus influenzae 86-028NP] gi|68057386|gb|AAX87639.1| SUN protein [Haemophilus influenzae 86-028NP] Length = 450 Score = 40.9 bits (95), Expect = 0.25, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 2/82 (2%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88 LL P + ILDA GG + ++ NVIALD + + +E + +Q + Sbjct: 253 LLEPKNEEWILDACAAPGGKTTHILELAPQANVIALDVESHRLKRVEENLARLNQQAIVV 312 Query: 89 QATFSQLQDYVPDKGVDGVVFD 110 S+ +++ + G V FD Sbjct: 313 CGDASKPDEWLAEIGKSAVKFD 334 >gi|254374038|ref|ZP_04989520.1| RNA methyltransferase [Francisella novicida GA99-3548] gi|151571758|gb|EDN37412.1| RNA methyltransferase [Francisella novicida GA99-3548] Length = 449 Score = 40.9 bits (95), Expect = 0.26, Method: Composition-based stats. Identities = 26/162 (16%), Positives = 56/162 (34%), Gaps = 24/162 (14%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83 ++++ I LL+ + I+D G G ++ + VI ++ +P V +ET + Sbjct: 289 MIKRAIELLDISENDSIIDLFCGLGNFTLPISQHAKTVIGVEGEPTMVKRAKETADN--N 346 Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGIS 143 + + L + S + F + K M + Sbjct: 347 NITNVNFYAANLFE-----------------SFEDKEWFNNFEYNK-----MLLDPPRAG 384 Query: 144 ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 A +V N ++ RI+ + + +R A +V + Sbjct: 385 AQEVCNNIEKFNVKRIVYVSCDTATLARDAGILVNTKGYKLI 426 >gi|54298582|ref|YP_124951.1| hypothetical protein lpp2646 [Legionella pneumophila str. Paris] gi|53752367|emb|CAH13799.1| hypothetical protein lpp2646 [Legionella pneumophila str. Paris] Length = 427 Score = 40.9 bits (95), Expect = 0.26, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 3/87 (3%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCGQETMRDYKEQFSL 87 LL+ PG+ +LDA GG + + S + +ALD DP + ++ + Q ++ Sbjct: 232 LLSLKPGQRVLDACCAPGGKTCHILEKESGLASCVALDLDPQRLQRVRDNLNRLDLQATV 291 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGVS 114 + + + + D ++ D S Sbjct: 292 VEGDVLEPRSWWDGHPFDRILLDAPCS 318 >gi|54295430|ref|YP_127845.1| hypothetical protein lpl2516 [Legionella pneumophila str. Lens] gi|53755262|emb|CAH16756.1| hypothetical protein lpl2516 [Legionella pneumophila str. Lens] Length = 427 Score = 40.9 bits (95), Expect = 0.26, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 3/87 (3%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCGQETMRDYKEQFSL 87 LL+ PG+ +LDA GG + + S + +ALD DP + ++ + Q ++ Sbjct: 232 LLSLKPGQRVLDACCAPGGKTCHILEKESGLASCVALDLDPQRLQRVRDNLNRLDLQATV 291 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGVS 114 + + + + D ++ D S Sbjct: 292 VEGDVLEPRSWWDGHPFDRILLDAPCS 318 >gi|331006122|ref|ZP_08329454.1| Glycine N-methyltransferase [gamma proteobacterium IMCC1989] gi|330420068|gb|EGG94402.1| Glycine N-methyltransferase [gamma proteobacterium IMCC1989] Length = 275 Score = 40.9 bits (95), Expect = 0.26, Method: Composition-based stats. Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 3/96 (3%) Query: 29 IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLF 88 I LLN K ILD G G +S S + G +V + D ++ E + Sbjct: 62 IDLLNEHKKKKILDVATGTGFHSVSLIEGGFDVTSSDGSATMLARAFENAKSRGHILKTN 121 Query: 89 QATFSQLQDYVPDKGVDGVVFDLGVS-SMQIDCGDR 123 QA + +L + V ++ D +V LG S S D DR Sbjct: 122 QADWRRLGESVHER-FDAIVC-LGNSFSHLHDEMDR 155 >gi|118444903|ref|YP_878837.1| rRNA methylase [Clostridium novyi NT] gi|118135359|gb|ABK62403.1| putative rRNA methylase [Clostridium novyi NT] Length = 188 Score = 40.9 bits (95), Expect = 0.26, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 39/95 (41%), Gaps = 7/95 (7%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRD 80 L ++ IA+ G + +DAT G G + ++ + + D A+ ++ + D Sbjct: 11 LAKE-IAIKKLQEGDIAVDATMGNGNDTVFLARLVGEKGKIYSFDVQSTAIENTKKRISD 69 Query: 81 YKEQ--FSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 K L + Y+ + V V+F+LG Sbjct: 70 NKINTEIELIHDGHENIDKYIKE-KVKLVMFNLGY 103 >gi|328876403|gb|EGG24766.1| hypothetical protein DFA_03010 [Dictyostelium fasciculatum] Length = 1122 Score = 40.9 bits (95), Expect = 0.26, Method: Composition-based stats. Identities = 11/72 (15%), Positives = 25/72 (34%), Gaps = 13/72 (18%) Query: 28 VIALLNPAPGKVILD-------------ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCG 74 V++ L+ ++ +D T G G+++ + A +DP Sbjct: 597 VVSALDNVEARLYVDTRCVQHSLPLLESGTLGTKGHTQVILPAKTESYASQKDPVEKQTP 656 Query: 75 QETMRDYKEQFS 86 T++ + S Sbjct: 657 FCTLKSFPNNLS 668 >gi|145629884|ref|ZP_01785676.1| potassium transporter peripheral membrane component [Haemophilus influenzae 22.1-21] gi|144977738|gb|EDJ87685.1| potassium transporter peripheral membrane component [Haemophilus influenzae 22.1-21] Length = 450 Score = 40.9 bits (95), Expect = 0.26, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 2/82 (2%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88 LL P + ILDA GG + ++ NVIALD + + +E + +Q + Sbjct: 253 LLEPKNEEWILDACAAPGGKTTHILELAPQANVIALDVESHRLKRVEENLARLNQQAIVV 312 Query: 89 QATFSQLQDYVPDKGVDGVVFD 110 S+ +++ + G V FD Sbjct: 313 CGDASKPDEWLAEIGKSAVKFD 334 >gi|227827996|ref|YP_002829776.1| Fmu (Sun) domain protein [Sulfolobus islandicus M.14.25] gi|229585265|ref|YP_002843767.1| Fmu (Sun) domain protein [Sulfolobus islandicus M.16.27] gi|238620224|ref|YP_002915050.1| Fmu (Sun) domain protein [Sulfolobus islandicus M.16.4] gi|227459792|gb|ACP38478.1| Fmu (Sun) domain protein [Sulfolobus islandicus M.14.25] gi|228020315|gb|ACP55722.1| Fmu (Sun) domain protein [Sulfolobus islandicus M.16.27] gi|238381294|gb|ACR42382.1| Fmu (Sun) domain protein [Sulfolobus islandicus M.16.4] Length = 339 Score = 40.9 bits (95), Expect = 0.26, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 4/90 (4%) Query: 28 VIALLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84 V LL+P P + I+D T AGG + + +I D V ++ + + Sbjct: 162 VAHLLDPQPNEKIVDMTAYAGGKLTH-IYQLEPRVKLIGFDHTEKKVEKLRDLVNKMGMR 220 Query: 85 FSLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 +++A L + + VD V+ D S Sbjct: 221 IEIYKADSRYLYEDYNIRDVDKVIIDPPCS 250 >gi|227830733|ref|YP_002832513.1| Fmu (Sun) domain protein [Sulfolobus islandicus L.S.2.15] gi|229581707|ref|YP_002840106.1| Fmu (Sun) domain protein [Sulfolobus islandicus Y.N.15.51] gi|284998246|ref|YP_003420014.1| Fmu (Sun) domain protein [Sulfolobus islandicus L.D.8.5] gi|227457181|gb|ACP35868.1| Fmu (Sun) domain protein [Sulfolobus islandicus L.S.2.15] gi|228012423|gb|ACP48184.1| Fmu (Sun) domain protein [Sulfolobus islandicus Y.N.15.51] gi|284446142|gb|ADB87644.1| Fmu (Sun) domain protein [Sulfolobus islandicus L.D.8.5] gi|323475086|gb|ADX85692.1| Fmu (Sun) domain protein [Sulfolobus islandicus REY15A] gi|323477818|gb|ADX83056.1| Fmu (Sun) domain protein [Sulfolobus islandicus HVE10/4] Length = 339 Score = 40.9 bits (95), Expect = 0.26, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 4/90 (4%) Query: 28 VIALLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84 V LL+P P + I+D T AGG + + +I D V ++ + + Sbjct: 162 VAHLLDPQPNEKIVDMTAYAGGKLTH-IYQLEPRVKLIGFDHTEKKVEKLRDLVNKMGMR 220 Query: 85 FSLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 +++A L + + VD V+ D S Sbjct: 221 IEIYKADSRYLYEDYNIRDVDKVIIDPPCS 250 >gi|47093774|ref|ZP_00231523.1| conserved hypothetical protein [Listeria monocytogenes str. 4b H7858] gi|254931605|ref|ZP_05264964.1| conserved hypothetical protein [Listeria monocytogenes HPB2262] gi|254993628|ref|ZP_05275818.1| hypothetical protein LmonocytoFSL_12013 [Listeria monocytogenes FSL J2-064] gi|47017861|gb|EAL08645.1| conserved hypothetical protein [Listeria monocytogenes str. 4b H7858] gi|293583158|gb|EFF95190.1| conserved hypothetical protein [Listeria monocytogenes HPB2262] gi|328465028|gb|EGF36307.1| hypothetical protein LM1816_09707 [Listeria monocytogenes 1816] gi|328474002|gb|EGF44815.1| hypothetical protein LM220_15815 [Listeria monocytogenes 220] gi|332312104|gb|EGJ25199.1| Methylase protein [Listeria monocytogenes str. Scott A] Length = 192 Score = 40.9 bits (95), Expect = 0.26, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 8/86 (9%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK--EQFSL 87 PG ++DAT G G+ +V+ D AV + + + Q L Sbjct: 18 VRPGDYVIDATCGN-GHDTLLLAELVGINGHVLGFDIQQMAVDATKARLENAGVSSQVEL 76 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGV 113 A+ +++ Y + V +F+LG Sbjct: 77 VCASHARIPAY-TSRPVRAAIFNLGY 101 >gi|325203836|gb|ADY99289.1| putative rRNA methylase [Neisseria meningitidis M01-240355] Length = 188 Score = 40.9 bits (95), Expect = 0.27, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 7/83 (8%) Query: 36 PGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQA 90 G LD T G G+ F V A D P A++ + +++ L Sbjct: 20 EGGNALDGTAGN-GHDTLFLAQTAGIRGKVWAFDIQPQALNNTRCRLQEAGYSNVRLILD 78 Query: 91 TFSQLQDYVPDKGVDGVVFDLGV 113 L+ YV + ++ +F+ G Sbjct: 79 GHENLKQYVSEP-LNAAIFNFGW 100 >gi|309378751|emb|CBX22577.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 188 Score = 40.9 bits (95), Expect = 0.27, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 7/83 (8%) Query: 36 PGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQA 90 G LD T G G+ F V A D P A++ + +++ L Sbjct: 20 EGGNALDGTAGN-GHDTLFLAQTAGIRGKVWAFDIQPQALNNTRCRLQEAGYSNVRLILD 78 Query: 91 TFSQLQDYVPDKGVDGVVFDLGV 113 L+ YV + ++ +F+ G Sbjct: 79 GHENLKQYVSEP-LNAAIFNFGW 100 >gi|313668775|ref|YP_004049059.1| hypothetical protein NLA_14850 [Neisseria lactamica ST-640] gi|313006237|emb|CBN87699.1| conserved hypothetical protein [Neisseria lactamica 020-06] Length = 188 Score = 40.9 bits (95), Expect = 0.27, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 12/95 (12%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMR 79 LL +V+ G LD T G G+ F V ALD P A++ + ++ Sbjct: 13 LLRQVL-----PEGGNALDGTAGN-GHDTLFLAQTAGIRGKVWALDIQPQALNNTRCRLQ 66 Query: 80 DYK-EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + L L+ YV + ++ +F+ G Sbjct: 67 EAGYSNVRLILDGHENLKQYVSEP-LNAAIFNFGW 100 >gi|242092256|ref|XP_002436618.1| hypothetical protein SORBIDRAFT_10g005915 [Sorghum bicolor] gi|241914841|gb|EER87985.1| hypothetical protein SORBIDRAFT_10g005915 [Sorghum bicolor] Length = 279 Score = 40.9 bits (95), Expect = 0.27, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 2/72 (2%) Query: 35 APGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATF 92 APG +++DA G GG S F G V+A++ DP V R Y ++ F Sbjct: 140 APGDLVVDAFAGCGGNSIQFAARGCYVVAVEIDPRKVELAAHNARVYGVEDRIEFIVGDF 199 Query: 93 SQLQDYVPDKGV 104 +L + V Sbjct: 200 FRLAPLLKADLV 211 >gi|257869135|ref|ZP_05648788.1| RNA methyltransferase [Enterococcus gallinarum EG2] gi|257803299|gb|EEV32121.1| RNA methyltransferase [Enterococcus gallinarum EG2] Length = 458 Score = 40.9 bits (95), Expect = 0.28, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 33/95 (34%), Gaps = 12/95 (12%) Query: 21 VPVLLEKVIALLNPAPGKVILD-----ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQ 75 +L ++ I L + ++D T G S K V +D P A+ + Sbjct: 297 TSILYDEAIKALALTKNETVVDAYCGVGTIG-----LSLAKHAKEVRGMDIIPQAIENAK 351 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFD 110 E R + + ++ +D +P G D Sbjct: 352 ENARRIQANNTHYET--GTAEDLLPKWFAAGFRPD 384 >gi|119475266|ref|ZP_01615619.1| sun protein [marine gamma proteobacterium HTCC2143] gi|119451469|gb|EAW32702.1| sun protein [marine gamma proteobacterium HTCC2143] Length = 434 Score = 40.9 bits (95), Expect = 0.28, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 3/88 (3%) Query: 30 ALLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCGQETMRDYKEQFS 86 AL+ APG+ +LDA GG + ++ + IALD D + ++ + + + S Sbjct: 239 ALMALAPGQRVLDACCAPGGKTCHMLELQPQLKQLIALDVDHQRLQKVEQNLERLQLKAS 298 Query: 87 LFQATFSQLQDYVPDKGVDGVVFDLGVS 114 L S+ + ++ D ++ D S Sbjct: 299 LTHGDASEPLTWWDNQPFDRILLDAPCS 326 >gi|326504188|dbj|BAJ90926.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 690 Score = 40.9 bits (95), Expect = 0.29, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 2/69 (2%) Query: 38 KVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQL 95 +++D G GG + F ++V A+D DP + C Q Y + F ++ Sbjct: 519 GILIDCFTGVGGNTIQFAAKCNHVFAVDIDPQKIDCAQHNATVYGVNDHIDFIIGDFIRI 578 Query: 96 QDYVPDKGV 104 ++ + V Sbjct: 579 APHLKGETV 587 >gi|326495568|dbj|BAJ85880.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 246 Score = 40.9 bits (95), Expect = 0.29, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 2/69 (2%) Query: 38 KVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQL 95 +++D G GG + F ++V A+D DP + C Q Y + F ++ Sbjct: 75 GILIDCFTGVGGNTIQFAAKCNHVFAVDIDPQKIDCAQHNATVYGVNDHIDFIIGDFIRI 134 Query: 96 QDYVPDKGV 104 ++ + V Sbjct: 135 APHLKGETV 143 >gi|124010362|ref|ZP_01695009.1| methyltransferase, putative [Microscilla marina ATCC 23134] gi|123983553|gb|EAY24015.1| methyltransferase, putative [Microscilla marina ATCC 23134] Length = 253 Score = 40.9 bits (95), Expect = 0.29, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 35/84 (41%), Gaps = 6/84 (7%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84 L++++ L P P +LD G G ++ K G ++ LD + GQ+ E+ Sbjct: 42 LDQLVDFLQPQPHHKLLDLACGKGKHAIYLSKKGLDMTGLDISENNLRYGQKFAH---ER 98 Query: 85 FSLFQATFSQLQDYVPDKGVDGVV 108 Q +++ + D ++ Sbjct: 99 LQFVQQ---DMREPYQENHFDFIL 119 >gi|78066871|ref|YP_369640.1| hypothetical protein Bcep18194_A5402 [Burkholderia sp. 383] gi|77967616|gb|ABB08996.1| hypothetical protein Bcep18194_A5402 [Burkholderia sp. 383] Length = 200 Score = 40.9 bits (95), Expect = 0.30, Method: Composition-based stats. Identities = 17/38 (44%), Positives = 23/38 (60%) Query: 36 PGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSC 73 PG +LD G G ++R F G V+ALDRDP A++ Sbjct: 31 PGGAVLDVAAGGGRHARWFASHGHPVVALDRDPTALAA 68 >gi|229543460|ref|ZP_04432520.1| putative rRNA methylase [Bacillus coagulans 36D1] gi|229327880|gb|EEN93555.1| putative rRNA methylase [Bacillus coagulans 36D1] Length = 190 Score = 40.9 bits (95), Expect = 0.30, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 32/90 (35%), Gaps = 10/90 (11%) Query: 33 NPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYK--EQFS 86 G +DAT G G+ F G V A D P AV +E + + Sbjct: 17 AVKSGGFAIDATAGN-GHDTVFLAKRVGEGGKVFAFDIQPEAVRRTKERLEKEGLVTRAE 75 Query: 87 LFQATFSQLQDYVPD---KGVDGVVFDLGV 113 LF + +P + G VF+LG Sbjct: 76 LFCTGHEHASECIPAALHGKISGAVFNLGY 105 >gi|238792967|ref|ZP_04636597.1| Ribosomal RNA small subunit methyltransferase B [Yersinia intermedia ATCC 29909] gi|238727821|gb|EEQ19345.1| Ribosomal RNA small subunit methyltransferase B [Yersinia intermedia ATCC 29909] Length = 429 Score = 40.9 bits (95), Expect = 0.30, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85 + LL+P G+ ILD GG + + +V+A+D D +S E ++ K Sbjct: 238 CVDLLDPQNGEQILDLCAAPGGKTTHILEAAPKAHVLAVDIDEQRLSRVNENLQRLKLHA 297 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + + + D+ D ++ D S Sbjct: 298 VVRVGDGRTPETWCGDQQFDRILLDAPCS 326 >gi|304314357|ref|YP_003849504.1| cobalt-precorrin-6Y C(15)-methyltransferase [Methanothermobacter marburgensis str. Marburg] gi|302587816|gb|ADL58191.1| cobalt-precorrin-6Y C(15)-methyltransferase [Methanothermobacter marburgensis str. Marburg] Length = 188 Score = 40.9 bits (95), Expect = 0.31, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 31/77 (40%), Gaps = 2/77 (2%) Query: 33 NPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY--KEQFSLFQA 90 +P G +D G GG + + V A+D+ P A+S + ++ + + +L + Sbjct: 30 DPGKGDTAVDVGCGTGGVTLELSRRAGRVYAIDKSPDAISTTEMNLKKHGLGDNVTLICS 89 Query: 91 TFSQLQDYVPDKGVDGV 107 + + + + Sbjct: 90 DAVEALSEIDALDIAVI 106 >gi|268317875|ref|YP_003291594.1| ribosomal L11 methyltransferase [Rhodothermus marinus DSM 4252] gi|262335409|gb|ACY49206.1| ribosomal L11 methyltransferase [Rhodothermus marinus DSM 4252] Length = 285 Score = 40.9 bits (95), Expect = 0.31, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 12/89 (13%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQETMRDYK 82 +L + PG +LDA G G + + K+G + IA D DP+A QE Sbjct: 140 MLPDCVE-----PGARVLDAGTGTGILTIAALKLGAGSAIAFDIDPWAAENAQENFARNG 194 Query: 83 --EQFSLFQATFSQLQDYVPDKGVDGVVF 109 ++ Q + + VP++ D ++ Sbjct: 195 VADRVEFRQGS----IEVVPERDFDLILA 219 >gi|310828099|ref|YP_003960456.1| SAM-dependent methyltransferase [Eubacterium limosum KIST612] gi|308739833|gb|ADO37493.1| SAM-dependent methyltransferase [Eubacterium limosum KIST612] Length = 208 Score = 40.9 bits (95), Expect = 0.31, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 9/89 (10%) Query: 41 LDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETM--RDYKEQFSLF---QATF 92 +DAT G G + + V + D A+ ++ + +++ LF T Sbjct: 45 VDATAGTGADTCLLARSVGACGKVYSFDVQKEALKETEQRLSAEGLRDRVLLFHKGHETM 104 Query: 93 SQLQDYVPDKGVDGVVFDLGVSSMQIDCG 121 + + D + G++F+LG D Sbjct: 105 GSIPELRQDSKIMGIMFNLGYL-PHGDKE 132 >gi|260583337|ref|ZP_05851110.1| ribosomal RNA small subunit methyltransferase B [Haemophilus influenzae NT127] gi|260093608|gb|EEW77523.1| ribosomal RNA small subunit methyltransferase B [Haemophilus influenzae NT127] Length = 451 Score = 40.9 bits (95), Expect = 0.31, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 2/82 (2%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88 LL P + ILDA GG + ++ NVIALD + + +E + +Q + Sbjct: 253 LLEPKNEEWILDACAAPGGKTTHILELAPQANVIALDVETHRLKRVEENLERLNQQAIVV 312 Query: 89 QATFSQLQDYVPDKGVDGVVFD 110 S+ +++ + G V FD Sbjct: 313 CGDASKPDEWLAEIGKSAVKFD 334 >gi|75675874|ref|YP_318295.1| dimethyladenosine transferase [Nitrobacter winogradskyi Nb-255] gi|119365042|sp|Q3SRZ8|RSMA_NITWN RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|74420744|gb|ABA04943.1| dimethyladenosine transferase [Nitrobacter winogradskyi Nb-255] Length = 287 Score = 40.5 bits (94), Expect = 0.32, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 6/61 (9%) Query: 42 DATF-----GAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95 DAT G GG +R+ +G+ +VIA++RD A+ +E Y + ++ A + Sbjct: 48 DATVVEIGPGPGGLTRALLAVGAKHVIAIERDERALGALEEISDRYPGRLTIINADATDF 107 Query: 96 Q 96 Sbjct: 108 D 108 >gi|329769326|ref|ZP_08260742.1| hypothetical protein HMPREF0433_00506 [Gemella sanguinis M325] gi|328839129|gb|EGF88714.1| hypothetical protein HMPREF0433_00506 [Gemella sanguinis M325] Length = 189 Score = 40.5 bits (94), Expect = 0.32, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 9/93 (9%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMR--D 80 LL++VI +++DAT G G + K + V A D A + + + + Sbjct: 11 LLKEVID-----KNSIVVDATAGNGNDTLFLAKTSAKKVFAFDVQNQATTNTNDLLEKNN 65 Query: 81 YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 ++ + + Y+ + + VVF+LG Sbjct: 66 LADKCEVILDSHENFDKYIEE-NIQAVVFNLGY 97 >gi|169827326|ref|YP_001697484.1| hypothetical protein Bsph_1760 [Lysinibacillus sphaericus C3-41] gi|168991814|gb|ACA39354.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41] Length = 246 Score = 40.5 bits (94), Expect = 0.32, Method: Composition-based stats. Identities = 31/100 (31%), Positives = 41/100 (41%), Gaps = 4/100 (4%) Query: 11 SAIHHTIGD-HVPVLLEKVI-ALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDP 68 +A ++ GD H VLL I +LL GK ILDA G G SR K G+ V A+D Sbjct: 18 TANYYEYGDIHHEVLLNPTIFSLLEEVDGKHILDAGCGEGYLSRILVKKGAIVTAVDFSQ 77 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVV 108 + E F L ++ D D +V Sbjct: 78 KMLDIAMERTPQQLP-VQFFHGNCENLA-FLADNQFDRIV 115 >gi|268566247|ref|XP_002639672.1| Hypothetical protein CBG12390 [Caenorhabditis briggsae] gi|187029521|emb|CAP31376.1| hypothetical protein CBG_12390 [Caenorhabditis briggsae AF16] Length = 573 Score = 40.5 bits (94), Expect = 0.32, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 7/75 (9%) Query: 42 DATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQL---- 95 DA G GG + F G++VIA+D DP + C +E R Y + A F + Sbjct: 404 DAFTGVGGNAIQFALRGAHVIAIDMDPVRLKCARENARVYGVADYIDFICADFFDVSATW 463 Query: 96 -QDYVPDKGVDGVVF 109 D VD V Sbjct: 464 AADKKLAPKVDAVFL 478 >gi|325690968|gb|EGD32968.1| rRNA methylase [Streptococcus sanguinis SK115] gi|325695068|gb|EGD36971.1| rRNA methylase [Streptococcus sanguinis SK150] Length = 183 Score = 40.5 bits (94), Expect = 0.33, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 6/92 (6%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82 + +A + +++DAT G G+ + K+ V A D AV ++ + + Sbjct: 7 MAHAFLAEVVTKED-IVVDATMGN-GHDTLFLAKLAKQVYAFDIQEQAVEKTRQGLAEAD 64 Query: 83 -EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + L A L Y +F+LG Sbjct: 65 LDNAQLILAGHETLDQYTDHFK--AAIFNLGY 94 >gi|290511109|ref|ZP_06550478.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Klebsiella sp. 1_1_55] gi|289776102|gb|EFD84101.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Klebsiella sp. 1_1_55] Length = 434 Score = 40.5 bits (94), Expect = 0.33, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 33/90 (36%), Gaps = 3/90 (3%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82 ++ + L+ P +LD G G ++ ++V+ ++ P V G+E Sbjct: 274 MVRTALEWLDLQPEDRVLDLFCGMGNFTLPLATRAAHVVGVEGVPALVEKGRENAALNGL 333 Query: 83 EQFSLFQATFSQ--LQDYVPDKGVDGVVFD 110 + F + + G D V+ D Sbjct: 334 SNVTFFHENLEEDVTRQAWAKHGFDKVLLD 363 >gi|254832065|ref|ZP_05236720.1| methylase protein [Listeria monocytogenes 10403S] Length = 191 Score = 40.5 bits (94), Expect = 0.33, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 8/86 (9%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK--EQFSL 87 PG ++DAT G G+ +V+ D AV + + + Q L Sbjct: 18 VRPGDYVIDATCGN-GHDTLLLAELVGINGHVLGFDIQQVAVDATKARLENAGVSSQVEL 76 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGV 113 A+ +++ Y + V +F+LG Sbjct: 77 VCASHARIPAY-TSRPVRAAIFNLGY 101 >gi|145631966|ref|ZP_01787719.1| methionyl-tRNA formyltransferase [Haemophilus influenzae R3021] gi|144982380|gb|EDJ89957.1| methionyl-tRNA formyltransferase [Haemophilus influenzae R3021] Length = 450 Score = 40.5 bits (94), Expect = 0.33, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 2/82 (2%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88 LL P + ILDA GG + ++ NVIALD + + +E + +Q + Sbjct: 253 LLEPKNEEWILDACAAPGGKTTHILELAPQANVIALDVESHRLKRVEENLERLNQQAIVV 312 Query: 89 QATFSQLQDYVPDKGVDGVVFD 110 S+ +++ + G V FD Sbjct: 313 CGDASKPDEWLAEIGKSAVKFD 334 >gi|117618823|ref|YP_854784.1| ribosomal RNA small subunit methyltransferase B [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560230|gb|ABK37178.1| ribosomal RNA small subunit methyltransferase B [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 430 Score = 40.5 bits (94), Expect = 0.33, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 3/85 (3%) Query: 33 NPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCGQETMRDYKEQFSLFQ 89 +P PG+ +LDA GG + + + +A+D D + QE + + Sbjct: 240 DPQPGEWVLDACAAPGGKTAHLLERQPALAGVVAVDADDNRLKRVQENLDRIGLTAKVIH 299 Query: 90 ATFSQLQDYVPDKGVDGVVFDLGVS 114 S + P+ D ++ D S Sbjct: 300 GDASTPDLWWPEGQFDRILLDAPCS 324 >gi|315303476|ref|ZP_07874063.1| methylase protein [Listeria ivanovii FSL F6-596] gi|313628158|gb|EFR96704.1| methylase protein [Listeria ivanovii FSL F6-596] Length = 191 Score = 40.5 bits (94), Expect = 0.33, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 8/86 (9%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK--EQFSL 87 PG ++DAT G G+ V+ D A+ + + + Q +L Sbjct: 18 VRPGDYVVDATCGN-GHDTLLLAELVGVNGYVLGFDIQQVAIDATRTRLENAAVSSQVNL 76 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGV 113 A+ + + +Y + V +F+LG Sbjct: 77 ICASHATIPEYATNP-VRAAIFNLGY 101 >gi|254820874|ref|ZP_05225875.1| hypothetical protein MintA_13150 [Mycobacterium intracellulare ATCC 13950] Length = 252 Score = 40.5 bits (94), Expect = 0.33, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 24/55 (43%) Query: 30 ALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84 L P ++D GAG ++ + G++V+A DRD + +R + Sbjct: 7 DRLGIGPSSKVIDVGCGAGRHAFEAYRRGADVVAFDRDEDELRSVDTILRAMADN 61 >gi|329725493|gb|EGG61973.1| putative rRNA methylase [Staphylococcus epidermidis VCU144] Length = 187 Score = 40.5 bits (94), Expect = 0.34, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 6/85 (7%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91 +++DAT G G + F + N V D A+ + +DY L Q+ Sbjct: 18 INHNSIVIDATCGNGNDTAYFAQHVPNGFVYGFDIQEQAILNTHKKTKDY-SNVKLIQSG 76 Query: 92 FSQLQDYVPDKG---VDGVVFDLGV 113 + ++P + +D +F+LG Sbjct: 77 HENAKLHIPAQHHGCIDAAIFNLGY 101 >gi|331235580|ref|XP_003330450.1| hypothetical protein PGTG_11987 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309309440|gb|EFP86031.1| hypothetical protein PGTG_11987 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 340 Score = 40.5 bits (94), Expect = 0.34, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 2/57 (3%) Query: 38 KVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATF 92 K+++D GAGG S F VIA+D+DP + + + Y E+ A F Sbjct: 132 KLVVDGFCGAGGNSIQFAMTCDKVIAIDKDPNKIKLARSNAKIYGVAEKIEFVCADF 188 >gi|27468352|ref|NP_764989.1| hypothetical protein SE1434 [Staphylococcus epidermidis ATCC 12228] gi|251811142|ref|ZP_04825615.1| rRNA methyltransferase [Staphylococcus epidermidis BCM-HMP0060] gi|282875819|ref|ZP_06284686.1| rRNA methylase family protein [Staphylococcus epidermidis SK135] gi|27315898|gb|AAO05033.1|AE016748_267 conserved hypothetical protein [Staphylococcus epidermidis ATCC 12228] gi|251805362|gb|EES58019.1| rRNA methyltransferase [Staphylococcus epidermidis BCM-HMP0060] gi|281294844|gb|EFA87371.1| rRNA methylase family protein [Staphylococcus epidermidis SK135] gi|329737178|gb|EGG73432.1| putative rRNA methylase [Staphylococcus epidermidis VCU028] Length = 187 Score = 40.5 bits (94), Expect = 0.34, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 6/85 (7%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91 +++DAT G G + F + N V D A+ + +DY L Q+ Sbjct: 18 INHNSIVIDATCGNGNDTAYFAQHVPNGFVYGFDIQEQAILNTHKKTKDY-SNVKLIQSG 76 Query: 92 FSQLQDYVPDKG---VDGVVFDLGV 113 + ++P + +D +F+LG Sbjct: 77 HENAKLHIPAQHHGCIDAAIFNLGY 101 >gi|332159596|ref|YP_004424875.1| proliferating-cell nucleolar protein p120 [Pyrococcus sp. NA2] gi|331035059|gb|AEC52871.1| proliferating-cell nucleolar protein p120 [Pyrococcus sp. NA2] Length = 309 Score = 40.5 bits (94), Expect = 0.34, Method: Composition-based stats. Identities = 16/100 (16%), Positives = 37/100 (37%), Gaps = 10/100 (10%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETMRDYKE-QFS 86 L+P P +++ D GG + ++ N + A D D + + + Sbjct: 107 ALDPKPNEIVADMAAAPGGKTSYLAQLMENKGIIYAFDVDEDRLRETRLNLSRLGVLNVV 166 Query: 87 LFQATFSQLQDYVPDKGVDGVVFDL---GVSSMQIDCGDR 123 LF ++ + + + D ++ D G ++ +R Sbjct: 167 LFHSSSLHIDELGVE--FDKILLDAPCTGSGTIH-KNPER 203 >gi|261855171|ref|YP_003262454.1| methyltransferase small [Halothiobacillus neapolitanus c2] gi|261835640|gb|ACX95407.1| methyltransferase small [Halothiobacillus neapolitanus c2] Length = 196 Score = 40.5 bits (94), Expect = 0.34, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 11/99 (11%) Query: 33 NPAPGKVILDATFGAG--GYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQA 90 P PG+ I+D G G G + + + ++VI LD+D A + + Q + Sbjct: 52 APEPGQTIVDLGCGYGPIGLALAKAQPKADVILLDKDFVACEFAASNAK--RNQLNNVVV 109 Query: 91 TFSQLQDYVPDKGVDGVVFDL-------GVSSMQIDCGD 122 S D + + VD +V ++ S M D + Sbjct: 110 KPSNGLDALRGQHVDRIVSNVPAKVGKEMWSIMLWDAAE 148 >gi|206576756|ref|YP_002236864.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Klebsiella pneumoniae 342] gi|226725382|sp|B5XV15|RUMA_KLEP3 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|206565814|gb|ACI07590.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Klebsiella pneumoniae 342] Length = 434 Score = 40.5 bits (94), Expect = 0.34, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 33/90 (36%), Gaps = 3/90 (3%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82 ++ + L+ P +LD G G ++ ++V+ ++ P V G+E Sbjct: 274 MVRTALEWLDLQPEDRVLDLFCGMGNFTLPLATRAAHVVGVEGVPALVEKGRENAALNGL 333 Query: 83 EQFSLFQATFSQ--LQDYVPDKGVDGVVFD 110 + F + + G D V+ D Sbjct: 334 SNVTFFHENLEEDVTRQAWAKHGFDKVLLD 363 >gi|170586146|ref|XP_001897841.1| CLL-associated antigen KW-2 [Brugia malayi] gi|158594736|gb|EDP33318.1| CLL-associated antigen KW-2, putative [Brugia malayi] Length = 480 Score = 40.5 bits (94), Expect = 0.34, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 2/68 (2%) Query: 30 ALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSL 87 + ++LD G GG F G+ VIALD DP + C + Y ++ + Sbjct: 227 DRVVIMRDAIVLDGFAGVGGNCIQFALKGAYVIALDMDPVRLRCAKRNAEIYGVADRINF 286 Query: 88 FQATFSQL 95 F Sbjct: 287 ICIDFFNF 294 >gi|315613451|ref|ZP_07888359.1| rRNA methylase [Streptococcus sanguinis ATCC 49296] gi|315314447|gb|EFU62491.1| rRNA methylase [Streptococcus sanguinis ATCC 49296] Length = 185 Score = 40.5 bits (94), Expect = 0.35, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 10/91 (10%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82 L +V+ +++DAT G G+ + K+ V A D A+ QE + Sbjct: 12 LAEVV----TKED-IVVDATMGN-GHDTLFLAKLAKQVYAFDIQEQALEKTQERLDQAGM 65 Query: 83 EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 L L +V + G+ F+LG Sbjct: 66 TNAQLILQGHETLNQFVTEAKA-GI-FNLGY 94 >gi|289582978|ref|YP_003481444.1| methyltransferase type 11 [Natrialba magadii ATCC 43099] gi|289532531|gb|ADD06882.1| Methyltransferase type 11 [Natrialba magadii ATCC 43099] Length = 268 Score = 40.5 bits (94), Expect = 0.35, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 11/84 (13%) Query: 26 EKVIALLNPAPGKVILDATFGAG-GY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83 E V+ LL PAP + ILD G G G+ + + G++V+ LD ++ +E Y + Sbjct: 28 EDVVDLLEPAPDERILD--LGCGTGHLTDQIARSGADVVGLDASGEMLAEARER---YPD 82 Query: 84 QFSLFQATFSQLQDYVPDKGVDGV 107 + + + +D+ + D V Sbjct: 83 R-EFVR---ADARDFSFEAEFDAV 102 >gi|145637960|ref|ZP_01793600.1| potassium transporter peripheral membrane component [Haemophilus influenzae PittHH] gi|145268851|gb|EDK08814.1| potassium transporter peripheral membrane component [Haemophilus influenzae PittHH] Length = 450 Score = 40.5 bits (94), Expect = 0.35, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 2/82 (2%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88 LL P + ILDA GG + ++ NVIALD + + +E + +Q + Sbjct: 253 LLEPKNEEWILDACAAPGGKTTHILELAPQANVIALDVESHRLKRVEENLERLNQQAIVV 312 Query: 89 QATFSQLQDYVPDKGVDGVVFD 110 S+ +++ + G V FD Sbjct: 313 CGDASKPDEWLAEIGKSAVKFD 334 >gi|163848211|ref|YP_001636255.1| type 11 methyltransferase [Chloroflexus aurantiacus J-10-fl] gi|222526119|ref|YP_002570590.1| type 11 methyltransferase [Chloroflexus sp. Y-400-fl] gi|163669500|gb|ABY35866.1| Methyltransferase type 11 [Chloroflexus aurantiacus J-10-fl] gi|222449998|gb|ACM54264.1| Methyltransferase type 11 [Chloroflexus sp. Y-400-fl] Length = 271 Score = 40.5 bits (94), Expect = 0.35, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 31/94 (32%), Gaps = 5/94 (5%) Query: 29 IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLF 88 I L + +LD G G +S + G V+ LD ++ Q D Sbjct: 38 IDALGLRGVETVLDVACGGGRHSLALAARGWTVVGLDAAASVIAHAQAAATDQGLNVEFV 97 Query: 89 QATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGD 122 QL + D V+ L SS+ + Sbjct: 98 TGDMRQLP---YHERFDVVL--LMNSSLGFFDDE 126 >gi|326917640|ref|XP_003205104.1| PREDICTED: trimethylguanosine synthase-like [Meleagris gallopavo] Length = 887 Score = 40.5 bits (94), Expect = 0.35, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 34/96 (35%), Gaps = 8/96 (8%) Query: 11 SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFA 70 S I +H+ V +V N I+DA G GG + F VIA+D DP Sbjct: 707 SVTPEKIAEHIAV---RVAQSFNCN---TIVDAFCGVGGNAIQFALTSKRVIAVDIDPEK 760 Query: 71 VSCGQETMRDYK--EQFSLFQATFSQLQDYVPDKGV 104 +S + Y Q F L + V Sbjct: 761 LSLARSNAEVYGVANQIEFVCGDFMVLAADLKADVV 796 >gi|57530384|ref|NP_001006389.1| trimethylguanosine synthase [Gallus gallus] gi|53133774|emb|CAG32216.1| hypothetical protein RCJMB04_20d7 [Gallus gallus] Length = 889 Score = 40.5 bits (94), Expect = 0.35, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 34/96 (35%), Gaps = 8/96 (8%) Query: 11 SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFA 70 S I +H+ V +V N I+DA G GG + F VIA+D DP Sbjct: 709 SVTPEKIAEHIAV---RVAQSFNCN---TIVDAFCGVGGNAIQFALTSKRVIAVDIDPEK 762 Query: 71 VSCGQETMRDYK--EQFSLFQATFSQLQDYVPDKGV 104 +S + Y Q F L + V Sbjct: 763 LSLARSNAEVYGVANQIEFVCGDFMVLAADLKADVV 798 >gi|313894507|ref|ZP_07828071.1| putative rRNA methylase [Veillonella sp. oral taxon 158 str. F0412] gi|313440903|gb|EFR59331.1| putative rRNA methylase [Veillonella sp. oral taxon 158 str. F0412] Length = 191 Score = 40.5 bits (94), Expect = 0.35, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 38/88 (43%), Gaps = 10/88 (11%) Query: 35 APGKVILDATFGAGGYSRSFC----KMGSNVIALDRDPFAVSCGQETMR----DYKEQFS 86 KV++DAT G G+ + + G ++ +D A++ +E ++ + Sbjct: 20 KKAKVVVDATCGN-GHDLLYLAKRAQKGCHLFGIDIQMKAINTSKELLKTNDIAPDVSLT 78 Query: 87 LFQATFS-QLQDYVPDKGVDGVVFDLGV 113 + L + D+ +D ++F+LG Sbjct: 79 FIHDSHDLALAHQLKDEVIDLMIFNLGY 106 >gi|153953679|ref|YP_001394444.1| rRNA methylase [Clostridium kluyveri DSM 555] gi|219854301|ref|YP_002471423.1| hypothetical protein CKR_0958 [Clostridium kluyveri NBRC 12016] gi|146346560|gb|EDK33096.1| Predicted rRNA methylase [Clostridium kluyveri DSM 555] gi|219568025|dbj|BAH06009.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 189 Score = 40.5 bits (94), Expect = 0.36, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 8/85 (9%) Query: 35 APGKVILDATFGAGGYS---RSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQF---SLF 88 G + +DAT G G + V A D A+ Q+ + YK F L Sbjct: 22 KEGDIAVDATMGNGNDTVFLAEIVGQSGKVYAFDIQQDAIKNTQKKIA-YKNLFKYVKLI 80 Query: 89 QATFSQLQDYVPDKGVDGVVFDLGV 113 + +Y+ + V V+F+LG Sbjct: 81 NDGHENMDNYISE-KVKLVIFNLGY 104 >gi|212529036|ref|XP_002144675.1| RNA methylase family protein, putative [Penicillium marneffei ATCC 18224] gi|210074073|gb|EEA28160.1| RNA methylase family protein, putative [Penicillium marneffei ATCC 18224] Length = 242 Score = 40.5 bits (94), Expect = 0.36, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 13/104 (12%) Query: 11 SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDP 68 +I + I +H+ P V++DA GAGG S +F K G V A++++P Sbjct: 57 ESIANKIAEHIS--------TSAPKDKVVLIDAFAGAGGNSIAFAKSGRWKRVYAIEKNP 108 Query: 69 FAVSCGQETMRDYK--EQFSLFQA-TFSQLQDYVPDKGVDGVVF 109 ++C + + Y + + F+ F L+ ++ D G VVF Sbjct: 109 AVLTCAKHNAKIYGVESKITWFEGDCFEILKTHLKDLGPYSVVF 152 >gi|169236727|ref|YP_001689927.1| S-adenosylmethionine-dependent methyltransferase [Halobacterium salinarum R1] gi|167727793|emb|CAP14581.1| S-adenosylmethionine-dependent methyltransferase [Halobacterium salinarum R1] Length = 209 Score = 40.5 bits (94), Expect = 0.36, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 24/60 (40%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83 + + +++L+ +LD G G + K +V LD+ P ++ E + Sbjct: 33 MRAEALSMLDIDAEDRVLDVGCGTGFGTEGLLKHTEHVYGLDQSPHQLTKAWEKFGKHDP 92 >gi|325577101|ref|ZP_08147585.1| RNA methyltransferase Sun [Haemophilus parainfluenzae ATCC 33392] gi|325160683|gb|EGC72804.1| RNA methyltransferase Sun [Haemophilus parainfluenzae ATCC 33392] Length = 445 Score = 40.5 bits (94), Expect = 0.37, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 2/82 (2%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88 LL P G++ILDA GG + +M VIALD + + +E + +Q ++ Sbjct: 247 LLEPQNGELILDACAAPGGKTTHILEMAPQAKVIALDVEAHRLKRVEENLSRLNQQATVV 306 Query: 89 QATFSQLQDYVPDKGVDGVVFD 110 ++ + ++ + G+ G FD Sbjct: 307 CGDATEPEKWLSEIGLSGASFD 328 >gi|328782578|ref|XP_393721.4| PREDICTED: hypothetical protein LOC410239 [Apis mellifera] Length = 1110 Score = 40.5 bits (94), Expect = 0.37, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 37/107 (34%), Gaps = 16/107 (14%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96 I+DA GAGG + F V+A+D DP + + R Y ++ F L Sbjct: 953 TIIDAFCGAGGNAIQFAFTCERVLAIDIDPVKIELARNNARIYGVDDRIEFIVGDFFTLA 1012 Query: 97 DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR--MSCSG 141 + + D+ S + K+ D+ M G Sbjct: 1013 SKL--------IADVVFLSPPWGGPG----YAKNETFDLNNIMHPIG 1047 >gi|226355316|ref|YP_002785056.1| methyltransferase [Deinococcus deserti VCD115] gi|226317306|gb|ACO45302.1| putative methyltransferase [Deinococcus deserti VCD115] Length = 250 Score = 40.5 bits (94), Expect = 0.37, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 30/87 (34%), Gaps = 12/87 (13%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK----------- 82 P P LD G GG++R K G V LD + + + D Sbjct: 39 PVPDVTALDLACGTGGFTRELLKAGLRVTGLDGSAEMLREARVRLPDVPFVQGDLRTFEL 98 Query: 83 -EQFSLFQATFSQLQDYVPDKGVDGVV 108 E+F L F L + + + + + Sbjct: 99 QERFGLMTCVFDSLNNLLTPEDLGAAL 125 >gi|170746537|ref|YP_001752797.1| Fmu (Sun) domain-containing protein [Methylobacterium radiotolerans JCM 2831] gi|170653059|gb|ACB22114.1| Fmu (Sun) domain protein [Methylobacterium radiotolerans JCM 2831] Length = 370 Score = 40.5 bits (94), Expect = 0.37, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 10/85 (11%) Query: 34 PAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQFSLF-- 88 P G+ I+D G GG + + G+ +IA D DP ++ E +R Q + Sbjct: 165 PRAGETIVDLCAGGGGKTLALAAETGNGARLIATDGDPRRLAPIHERLRRSGAQAEVRTP 224 Query: 89 ---QATFSQLQDYVPDKGVDGVVFD 110 +A L D D VD VV D Sbjct: 225 RSGKARADVLADL--DGKVDRVVVD 247 >gi|15790980|ref|NP_280804.1| Hmp [Halobacterium sp. NRC-1] gi|10581563|gb|AAG20284.1| membrane protein [Halobacterium sp. NRC-1] Length = 218 Score = 40.5 bits (94), Expect = 0.37, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 24/60 (40%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83 + + +++L+ +LD G G + K +V LD+ P ++ E + Sbjct: 42 MRAEALSMLDIDAEDRVLDVGCGTGFGTEGLLKHTEHVYGLDQSPHQLTKAWEKFGKHDP 101 >gi|312068501|ref|XP_003137243.1| CLL-associated antigen KW-2 [Loa loa] gi|307767588|gb|EFO26822.1| CLL-associated antigen KW-2 [Loa loa] Length = 459 Score = 40.5 bits (94), Expect = 0.37, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 9/87 (10%) Query: 11 SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFA 70 S + H+ ++V+ ++LD G GG F G+ VIALD DP Sbjct: 223 SVTPERVAAHI---ADRVV----IMKDTIVLDGFAGVGGNCIQFALKGAYVIALDMDPVR 275 Query: 71 VSCGQETMRDYK--EQFSLFQATFSQL 95 + C + Y ++ + F Sbjct: 276 LRCAKRNAEIYGVADRINFICIDFFNF 302 >gi|264680840|ref|YP_003280750.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Comamonas testosteroni CNB-2] gi|262211356|gb|ACY35454.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Comamonas testosteroni CNB-2] Length = 475 Score = 40.5 bits (94), Expect = 0.37, Method: Composition-based stats. Identities = 27/136 (19%), Positives = 45/136 (33%), Gaps = 17/136 (12%) Query: 50 YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVF 109 ++R D + + + DYK + QATF QL G Sbjct: 332 HARHILLTVG-------DGMTEAQAAKRLEDYKRRVEAGQATFQQLAQEFSKDGSARNGG 384 Query: 110 DLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVK--DLTRILGILGEEK 167 DLG SS + LD G ++ VV++ V L E+ Sbjct: 385 DLGWSSPGQFVPE------FERVLDNL--QPGQISNPVVSRFGVHLIQLIERRQEKLTER 436 Query: 168 QASRIAHAIVKRRQSA 183 + + +V+ R++ Sbjct: 437 EQREMVRNVVRERKAE 452 >gi|220925669|ref|YP_002500971.1| dimethyladenosine transferase [Methylobacterium nodulans ORS 2060] gi|219950276|gb|ACL60668.1| dimethyladenosine transferase [Methylobacterium nodulans ORS 2060] Length = 283 Score = 40.5 bits (94), Expect = 0.37, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Query: 46 GAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSLFQA 90 G GG +R+ G+ VIA++RDP A+ E Y + ++ +A Sbjct: 56 GPGGLTRALLAEGAARVIAIERDPRALPALAEIAAHYPGRLTVVEA 101 >gi|167946494|ref|ZP_02533568.1| hypothetical protein Epers_08068 [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 222 Score = 40.5 bits (94), Expect = 0.37, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 2/86 (2%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCGQETMRDYKEQFSLF 88 LL PG+ +LDA GG + ++ ++ A+D DP + E ++ Q L Sbjct: 122 LLELQPGQRVLDACAAPGGKTGHMLELADDLRLTAIDLDPQRLQRVAENLQRLGLQAELQ 181 Query: 89 QATFSQLQDYVPDKGVDGVVFDLGVS 114 + Q ++ D ++ D+ S Sbjct: 182 AGDAAHPQGRWAERQYDRILLDVPCS 207 >gi|261378773|ref|ZP_05983346.1| putative rRNA methylase [Neisseria cinerea ATCC 14685] gi|269144749|gb|EEZ71167.1| putative rRNA methylase [Neisseria cinerea ATCC 14685] Length = 188 Score = 40.5 bits (94), Expect = 0.38, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 12/95 (12%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMR 79 LL++ + G LD T G G+ F V A D P A++ Q ++ Sbjct: 13 LLQQTL-----PEGGNALDGTAGN-GHDTLFLAQTAGILGKVWAFDIQPQALTLTQCRLK 66 Query: 80 DYK-EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + E L L+ YV + ++ +F+ G Sbjct: 67 EAGYENAQLILDGHENLKQYVSEP-LNAAIFNFGW 100 >gi|329122539|ref|ZP_08251122.1| RNA methyltransferase Sun [Haemophilus aegyptius ATCC 11116] gi|327473144|gb|EGF18568.1| RNA methyltransferase Sun [Haemophilus aegyptius ATCC 11116] Length = 451 Score = 40.5 bits (94), Expect = 0.38, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 7/91 (7%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88 LL P + ILDA GG + ++ NVIALD + + +E + +Q + Sbjct: 253 LLEPKNEEWILDACAAPGGKTTHILELAPQANVIALDVESHRLKRVEENLARLNQQAIVV 312 Query: 89 QATFSQLQDYVPDKG-----VDGVVFDLGVS 114 S+ +++ + G D ++ D S Sbjct: 313 CGDASKPDEWLAEIGKSAAKFDRILLDSPCS 343 >gi|229915893|ref|YP_002884539.1| 1-phosphofructokinase [Exiguobacterium sp. AT1b] gi|229467322|gb|ACQ69094.1| 1-phosphofructokinase [Exiguobacterium sp. AT1b] Length = 309 Score = 40.5 bits (94), Expect = 0.39, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 44/125 (35%), Gaps = 8/125 (6%) Query: 127 FQKSGPLDMRMSCSGISAS-DVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 SGP ++A D V + ++ L + + IA +I ++ Sbjct: 101 LNASGPNITERELEQLTAKFDQVQEGDIVVLAGSIPSNLPDSLYRTIAESIREKGADFVV 160 Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 TT+D + H F + EIE + L AE+ +K G Sbjct: 161 DTTKDAMLEVLALEPLMIKPNHHELGELF-------DTEIETFEEALPYAEQLVKRGAKN 213 Query: 246 IVVSF 250 +++SF Sbjct: 214 VIISF 218 >gi|312143625|ref|YP_003995071.1| rRNA methylase [Halanaerobium sp. 'sapolanicus'] gi|311904276|gb|ADQ14717.1| rRNA methylase [Halanaerobium sp. 'sapolanicus'] Length = 190 Score = 40.5 bits (94), Expect = 0.39, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 38/82 (46%), Gaps = 5/82 (6%) Query: 37 GKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMR--DYKEQFSLFQAT 91 +++DAT G G + ++ + ++A D AV Q+ + + + Q + + Sbjct: 23 DSILIDATAGNGKDTLFMAELTDQNTEILAFDIQKKAVKNTQKLLEKNNLQAQVKVIHDS 82 Query: 92 FSQLQDYVPDKGVDGVVFDLGV 113 + L Y+ + + V+F+LG Sbjct: 83 HANLDKYINENQLSLVLFNLGY 104 >gi|304415449|ref|ZP_07396098.1| 16S rRNA m5C967 methyltransferase (SAM-dependent) [Candidatus Regiella insecticola LSR1] gi|304282713|gb|EFL91227.1| 16S rRNA m5C967 methyltransferase (SAM-dependent) [Candidatus Regiella insecticola LSR1] Length = 390 Score = 40.5 bits (94), Expect = 0.39, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQF 85 I LL+P G+ ILD GG + ++ V+A+D D + C +E ++ + Q Sbjct: 238 CIDLLHPKNGEYILDLCAAPGGKTTYILEVAPKAEVLAVDIDKQRLRCVKENLQRLQLQA 297 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + + ++ D ++ D S Sbjct: 298 RIKIGDGRTPDIWCGEQLFDRILLDAPCS 326 >gi|77413361|ref|ZP_00789555.1| conserved hypothetical protein [Streptococcus agalactiae 515] gi|77160603|gb|EAO71720.1| conserved hypothetical protein [Streptococcus agalactiae 515] Length = 188 Score = 40.5 bits (94), Expect = 0.39, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 32/90 (35%), Gaps = 7/90 (7%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-E 83 L +VI + LDAT G G + K V A D A++ + + Sbjct: 13 LAEVID-----KEAITLDATMGNGNDTVFLAKSSKKVYAFDIQEEAIAKTKAKLTGQGIS 67 Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 L L+ YV + +F+LG Sbjct: 68 NVELILDGHENLEQYVHTP-LRAAIFNLGY 96 >gi|260829457|ref|XP_002609678.1| hypothetical protein BRAFLDRAFT_123579 [Branchiostoma floridae] gi|229295040|gb|EEN65688.1| hypothetical protein BRAFLDRAFT_123579 [Branchiostoma floridae] Length = 1095 Score = 40.5 bits (94), Expect = 0.39, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 2/68 (2%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96 +I+DA G GG + F VIA+D DP + C + Y ++ Q + L Sbjct: 940 LIIDAFCGVGGNAIQFAFTCERVIAIDIDPVKLECARHNAAIYGVADRIEFLQGDYLHLA 999 Query: 97 DYVPDKGV 104 + + V Sbjct: 1000 EGLKADVV 1007 >gi|183600721|ref|ZP_02962214.1| hypothetical protein PROSTU_04317 [Providencia stuartii ATCC 25827] gi|188019701|gb|EDU57741.1| hypothetical protein PROSTU_04317 [Providencia stuartii ATCC 25827] Length = 428 Score = 40.5 bits (94), Expect = 0.40, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 41/89 (46%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85 LL P + ILD GG + ++ +V+A+D D + +E ++ ++Q Sbjct: 238 CAELLEPQNHETILDLCAAPGGKTTHILELAPKAHVVAVDIDEHRLKRVKENLQRLQQQA 297 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 ++ Q ++ +++ + D ++ D S Sbjct: 298 AVIQGDGTKPEEWANGQLFDRILLDAPCS 326 >gi|300855630|ref|YP_003780614.1| putative methylase [Clostridium ljungdahlii DSM 13528] gi|300435745|gb|ADK15512.1| predicted methylase [Clostridium ljungdahlii DSM 13528] Length = 246 Score = 40.5 bits (94), Expect = 0.40, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 36/95 (37%), Gaps = 5/95 (5%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSL 87 + L GK ILD G GGYSR+ G+ V A D + + ++ + Sbjct: 36 TLEKLGDIKGKYILDLGCGEGGYSRALSHKGAIVTAADCSEVFIEYAKNKAKEEGLRIEH 95 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGD 122 S + + D D V+ S M +D D Sbjct: 96 CVLN-SNTLNVIDDNYYDIVL----CSMMLMDVED 125 >gi|270264342|ref|ZP_06192608.1| hypothetical protein SOD_h00090 [Serratia odorifera 4Rx13] gi|270041478|gb|EFA14576.1| hypothetical protein SOD_h00090 [Serratia odorifera 4Rx13] Length = 429 Score = 40.2 bits (93), Expect = 0.42, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85 + LL+P G+ ILD GG + + +V+A+D D + +E ++ + Sbjct: 238 CVDLLDPQNGEQILDLCAAPGGKTTHILEAAPKAHVMAVDIDEQRLGRVKENLQRLRLHA 297 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + Q + DK D ++ D S Sbjct: 298 EVKLGDGRTPQQWCGDKQFDRILLDAPCS 326 >gi|146291133|ref|YP_001181557.1| sun protein [Shewanella putrefaciens CN-32] gi|145562823|gb|ABP73758.1| sun protein [Shewanella putrefaciens CN-32] Length = 429 Score = 40.2 bits (93), Expect = 0.42, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 2/86 (2%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQFSLF 88 LL P ++ILDA GG S ++ N ++A+D D + Q+ + + L Sbjct: 235 LLAPQANELILDACAAPGGKSCHLLEVEPNIKLVAVDFDAKRLERVQQNLDRLSLKAELI 294 Query: 89 QATFSQLQDYVPDKGVDGVVFDLGVS 114 + + + D ++ D S Sbjct: 295 HGDAANIGSWWQGGLFDRILLDAPCS 320 >gi|238921411|ref|YP_002934926.1| 16S rRNA methyltransferase B [Edwardsiella ictaluri 93-146] gi|238870980|gb|ACR70691.1| ribosomal RNA small subunit methyltransferase B, putative [Edwardsiella ictaluri 93-146] Length = 430 Score = 40.2 bits (93), Expect = 0.42, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 36/89 (40%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85 + LL+P + ILD GG + + +V+A+D D + +E ++ ++ Sbjct: 239 SVDLLDPQDSEQILDLCCAPGGKTTHILEAAPKAHVLAVDVDETRLKRVRENLQRLQQHA 298 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + ++ + D ++ D S Sbjct: 299 EIRCGDGRTPDEWASGRQFDRILLDAPCS 327 >gi|23015617|ref|ZP_00055388.1| COG0030: Dimethyladenosine transferase (rRNA methylation) [Magnetospirillum magnetotacticum MS-1] Length = 276 Score = 40.2 bits (93), Expect = 0.42, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%) Query: 46 GAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSLF 88 G GG +R+ G+ +VIA++RD A++ E Y + + Sbjct: 54 GPGGLTRALLDAGARHVIAIERDDRAIAIQNEIAEAYPGRLEII 97 >gi|120598069|ref|YP_962643.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella sp. W3-18-1] gi|143582575|sp|A1RHE4|RUMA_SHESW RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|120558162|gb|ABM24089.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shewanella sp. W3-18-1] Length = 450 Score = 40.2 bits (93), Expect = 0.43, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 2/89 (2%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82 ++ + + L PAP + ILD G G +S KMG++VI ++ VS + + Sbjct: 292 MVAQAMDWLAPAPDERILDLFCGMGNFSLPLAKMGADVIGVEGVAEMVSQARVNAKANNL 351 Query: 83 EQFSLFQATFSQLQDYVPDKG-VDGVVFD 110 ++ + + S P G +D ++ D Sbjct: 352 DKLTFYHGDLSADLSLEPWMGKIDKLLLD 380 >gi|146293860|ref|YP_001184284.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella putrefaciens CN-32] gi|226725391|sp|A4Y952|RUMA_SHEPC RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|145565550|gb|ABP76485.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shewanella putrefaciens CN-32] Length = 450 Score = 40.2 bits (93), Expect = 0.43, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 2/89 (2%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82 ++ + + L PAP + ILD G G +S KMG++VI ++ VS + + Sbjct: 292 MVAQAMDWLAPAPDERILDLFCGMGNFSLPLAKMGADVIGVEGVAEMVSQARVNAKANNL 351 Query: 83 EQFSLFQATFSQLQDYVPDKG-VDGVVFD 110 ++ + + S P G +D ++ D Sbjct: 352 DKLTFYHGDLSADLSLEPWMGKIDKLLLD 380 >gi|167462258|ref|ZP_02327347.1| conserved protein YtqB [Paenibacillus larvae subsp. larvae BRL-230010] gi|322383956|ref|ZP_08057686.1| RNA methylase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321151433|gb|EFX44620.1| RNA methylase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 196 Score = 40.2 bits (93), Expect = 0.44, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 37/91 (40%), Gaps = 10/91 (10%) Query: 33 NPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQ----F 85 PG+ ++DAT G G + + V D A+ ++ + Sbjct: 17 KVQPGESVIDATAGNGVDTLFLASLVGPSGKVYGFDIQKEAIRHTRDRLAQELPSSALYV 76 Query: 86 SLFQATFSQLQDYVPDK---GVDGVVFDLGV 113 +L Q + +L DY+P++ + +F+LG Sbjct: 77 TLIQDSHHRLTDYLPEQEQGKIAAAMFNLGY 107 >gi|103488037|ref|YP_617598.1| methyltransferase type 11 [Sphingopyxis alaskensis RB2256] gi|98978114|gb|ABF54265.1| Methyltransferase type 11 [Sphingopyxis alaskensis RB2256] Length = 228 Score = 40.2 bits (93), Expect = 0.44, Method: Composition-based stats. Identities = 26/97 (26%), Positives = 35/97 (36%), Gaps = 16/97 (16%) Query: 29 IALLNPAPGKVILDATFGAGGYSRSFC----KMGSNVIALDRDPFAVSCGQETMRDYKEQ 84 + L P G+ ILD G G S + G+ +I LD DP + + R + Sbjct: 45 LEQLAPRNGETILDVGCGTG--SFALLMKCRAPGARIIGLDPDPDVLHRAEAKARKAGVE 102 Query: 85 FSLFQATFSQLQDYVPDKGVDGVVFDLGVSS---MQI 118 Q S GV FD VSS Q+ Sbjct: 103 IEWRQGFASDAATL-------GVRFDKTVSSLVFHQV 132 >gi|325290000|ref|YP_004266181.1| rRNA methylase [Syntrophobotulus glycolicus DSM 8271] gi|324965401|gb|ADY56180.1| rRNA methylase [Syntrophobotulus glycolicus DSM 8271] Length = 200 Score = 40.2 bits (93), Expect = 0.44, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 42/92 (45%), Gaps = 9/92 (9%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDYK--EQFSLF 88 + G ++LD T G G + ++ V A D AV ++ ++D ++ + Sbjct: 21 ISEGDLVLDCTAGLGRDTLFLARLVGPRGKVYAFDIQDKAVEATKKLLQDEGLLKRVEVL 80 Query: 89 QATFSQLQDYVPDKGVDGVVFDLGV---SSMQ 117 QA + L++++ + + VF+LG S Q Sbjct: 81 QADHADLREWIKTE-IKAAVFNLGFLPGSDHQ 111 >gi|158289899|ref|XP_001689406.1| AGAP010425-PA [Anopheles gambiae str. PEST] gi|157018380|gb|EDO64279.1| AGAP010425-PA [Anopheles gambiae str. PEST] Length = 468 Score = 40.2 bits (93), Expect = 0.44, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 41/112 (36%), Gaps = 14/112 (12%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96 +I+DA G GG + F VIA+D DP + + Y ++ F QL Sbjct: 312 LIIDAFCGCGGNTIQFAFSCQKVIAIDIDPRKIEMAKHNAAVYGVADRIEFIVGDFMQL- 370 Query: 97 DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVV 148 VD + D+ S + K ++ S + A+ ++ Sbjct: 371 -------VDRLQADVVFLSPPWGGPG----YLKDEVYNLEQSLLPVPATQLM 411 >gi|74316034|ref|YP_313774.1| Fmu, rRNA SAM-dependent methyltransferase [Thiobacillus denitrificans ATCC 25259] gi|74055529|gb|AAZ95969.1| Fmu, rRNA SAM-dependent methyltransferase [Thiobacillus denitrificans ATCC 25259] Length = 418 Score = 40.2 bits (93), Expect = 0.44, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 41/85 (48%), Gaps = 1/85 (1%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSLFQ 89 LL PG+ +LDA GG + ++ +++ALD D ++ QE + + +L + Sbjct: 232 LLGAKPGERVLDACAAPGGKTGHILELADVDLVALDVDAARLARVQENLDRLRLHATLVE 291 Query: 90 ATFSQLQDYVPDKGVDGVVFDLGVS 114 ++ + + + D ++ D+ S Sbjct: 292 GDAARPEAWWDGRPFDRILADVPCS 316 >gi|260893756|ref|YP_003239853.1| protein of unknown function DUF548 [Ammonifex degensii KC4] gi|260865897|gb|ACX53003.1| protein of unknown function DUF548 [Ammonifex degensii KC4] Length = 261 Score = 40.2 bits (93), Expect = 0.45, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 37/100 (37%), Gaps = 17/100 (17%) Query: 26 EKVIALLNPAPGKVILDATFGAGGYSRSF-----CKMGSNVIALDRDP----------FA 70 + +I + PG+ +LD T G G S + V+ +++ P A Sbjct: 88 DPLIEAMALTPGESVLDCTLGLG--SEALVVSFFLGPSGRVVGVEKVPVIALLVREGLKA 145 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFD 110 ++ + + + + A +P++ D V FD Sbjct: 146 LASSSSPLAEAASRIEVVVADHLDYLKALPEESFDVVYFD 185 >gi|321259059|ref|XP_003194250.1| hypothetical protein CGB_E2230C [Cryptococcus gattii WM276] gi|317460721|gb|ADV22463.1| conserved hypothetical protein [Cryptococcus gattii WM276] Length = 426 Score = 40.2 bits (93), Expect = 0.45, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 6/77 (7%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQ-- 94 VI+DA G GG + +F K VIA+D D + + + ++ +++ Sbjct: 249 VIVDAFCGVGGNAIAFAKTCERVIAIDNDITRLKLARHNALHHGVADRIEFILGDYTEFA 308 Query: 95 --LQDYVPDKGVDGVVF 109 + P+ VD V Sbjct: 309 RSFAEKNPEDKVDVVFL 325 >gi|327404248|ref|YP_004345086.1| type 11 methyltransferase [Fluviicola taffensis DSM 16823] gi|327319756|gb|AEA44248.1| Methyltransferase type 11 [Fluviicola taffensis DSM 16823] Length = 255 Score = 40.2 bits (93), Expect = 0.46, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 36/99 (36%), Gaps = 16/99 (16%) Query: 11 SAIHHTIGDHVPVLLEK------------VIALLNPAPGKVILDATFGAGGYSRSFCKMG 58 S + H VL ++ ++A L PA LD GAG +SR+ G Sbjct: 20 STWFDSPFYH--VLYDERNDDEANEFLSNLVAYLKPAQNSTALDLACGAGRHSRALASHG 77 Query: 59 SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD 97 +V D P ++ + + D F +L + Sbjct: 78 LHVSGCDLSPNSIEEA-KRVSDSSLTF-FVHDMREKLDN 114 >gi|256371699|ref|YP_003109523.1| tRNA methyltransferase complex GCD14 subunit [Acidimicrobium ferrooxidans DSM 10331] gi|256008283|gb|ACU53850.1| tRNA methyltransferase complex GCD14 subunit [Acidimicrobium ferrooxidans DSM 10331] Length = 296 Score = 40.2 bits (93), Expect = 0.46, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 5/86 (5%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQF 85 ++ L+ APG+ +L+ G+GG + ++G++V+A++R P ++ + E+ Sbjct: 89 ILGALDVAPGQRVLECGVGSGGLTVWLARLGASVVAVERRPDFARRAEKNVAHLGGSERV 148 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDL 111 S+ +L D P D VV D+ Sbjct: 149 SIIVG---ELADVAPPGPYDRVVLDM 171 >gi|121699691|ref|XP_001268111.1| RNA methylase family protein, putative [Aspergillus clavatus NRRL 1] gi|119396253|gb|EAW06685.1| RNA methylase family protein, putative [Aspergillus clavatus NRRL 1] Length = 238 Score = 40.2 bits (93), Expect = 0.46, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 54/128 (42%), Gaps = 14/128 (10%) Query: 39 VILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMRDYK--EQFSLFQA-TFS 93 +++DA GAGG + +F + G V A++++P + C + + Y ++ + FQ F Sbjct: 76 ILVDAFAGAGGNTIAFARTGKWKRVYAIEKNPAVLQCAKHNAKVYGVADKITWFQGDCFE 135 Query: 94 QLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANV 153 L++ + + +VF S ++ +M + S + N+ ++ Sbjct: 136 ILKNQLKELAPYSIVFA----SPPWGGPG----YRSDKVFNMS-TMEPYSLQTLYNEYSL 186 Query: 154 KDLTRILG 161 +L Sbjct: 187 FTEHMVLY 194 >gi|116334949|ref|YP_802444.1| hypothetical protein CRP_047 [Candidatus Carsonella ruddii PV] gi|116235230|dbj|BAF35078.1| hypothetical protein [Candidatus Carsonella ruddii PV] Length = 193 Score = 40.2 bits (93), Expect = 0.46, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 41/108 (37%), Gaps = 13/108 (12%) Query: 18 GDHVPVLLEKVI---ALLNPAPGKVILDATFGAGGYSR-SFCKMGSNVI-ALDRDPFAVS 72 H +L +++ L LD TFG GGY + K +I +D + Sbjct: 3 NKHTTILPNRLLYKKEYL--------LDFTFGCGGYIKNLILKQKFKIIYTIDVSQISYL 54 Query: 73 CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDC 120 + + F L +++ VD +++D G++S +I Sbjct: 55 ISNKIYNKFFFFFRLKIKNINKIFKRFNLINVDFIIYDQGINSYEIKN 102 >gi|269839204|ref|YP_003323896.1| methyltransferase type 11 [Thermobaculum terrenum ATCC BAA-798] gi|269790934|gb|ACZ43074.1| Methyltransferase type 11 [Thermobaculum terrenum ATCC BAA-798] Length = 252 Score = 40.2 bits (93), Expect = 0.46, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 7/87 (8%) Query: 21 VPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRD 80 V + +I LL PAPG+ +LD G G + + G+ V+ +D P V + Sbjct: 16 VSAMGADLIELLAPAPGERVLDLGCGTGDLAHRIAQRGAEVVGIDISPEMV--AMARSKY 73 Query: 81 YKEQFSLFQATFSQLQDYVPDKGVDGV 107 +F + + +QDY D D V Sbjct: 74 PHIRFEV-----ADVQDYRSDGSFDAV 95 >gi|23015692|ref|ZP_00055461.1| COG0500: SAM-dependent methyltransferases [Magnetospirillum magnetotacticum MS-1] Length = 176 Score = 40.2 bits (93), Expect = 0.46, Method: Composition-based stats. Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 1/36 (2%) Query: 32 LNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRD 67 L P G +LD G G +SR F G V ALDRD Sbjct: 20 LVPK-GGTVLDLACGGGRHSRLFLDRGHKVTALDRD 54 >gi|195392497|ref|XP_002054894.1| GJ22549 [Drosophila virilis] gi|194152980|gb|EDW68414.1| GJ22549 [Drosophila virilis] Length = 466 Score = 40.2 bits (93), Expect = 0.47, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 41/117 (35%), Gaps = 12/117 (10%) Query: 37 GKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQ 94 G VI+DA G GG + F S VIA+D D ++ ++ Y + A F Q Sbjct: 297 GDVIVDAFCGCGGNAIQFANTCSRVIAIDIDANKLAMAKQNALIYGVAHKIEFVHADFLQ 356 Query: 95 LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQA 151 D V S D + K D+ + AS ++ A Sbjct: 357 FAS-STRLRPDVVFL-----SPPWGGPD----YLKQATFDIEQHLLPLGASQLMQHA 403 >gi|82751349|ref|YP_417090.1| hypothetical protein SAB1621 [Staphylococcus aureus RF122] gi|82656880|emb|CAI81310.1| conserved hypothetical protein [Staphylococcus aureus RF122] Length = 187 Score = 40.2 bits (93), Expect = 0.47, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 36/85 (42%), Gaps = 6/85 (7%) Query: 34 PAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91 P +++DAT G G + + +V D A+ ++ ++D+ SL + Sbjct: 18 ITPESIVVDATCGNGNDTLFLAEQVPEGHVYGFDIQDLALENTRDKVKDF-NHVSLIKDG 76 Query: 92 FSQLQDYVPD---KGVDGVVFDLGV 113 ++ ++ D + +F+LG Sbjct: 77 HENIEHHINDAHKGHIAAAIFNLGY 101 >gi|253579059|ref|ZP_04856330.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850002|gb|EES77961.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 187 Score = 40.2 bits (93), Expect = 0.47, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 33/86 (38%), Gaps = 5/86 (5%) Query: 33 NPAPGKVILDATFGAGGYS---RSFCKMGSNVIALDRDPFAVSCGQETMRD--YKEQFSL 87 G +DAT G G + C V+A D A++ Q+ + E + L Sbjct: 17 QVQEGDFCIDATMGNGNDTLLLSQLCGESGKVLAFDIQEQALTATQKRLNAGHVPENYRL 76 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGV 113 + + + +Y V +VF+ G Sbjct: 77 LLESHANMAEYATPDSVSCIVFNFGY 102 >gi|258438327|ref|ZP_05689611.1| conserved hypothetical protein [Staphylococcus aureus A9299] gi|257848371|gb|EEV72362.1| conserved hypothetical protein [Staphylococcus aureus A9299] Length = 187 Score = 40.2 bits (93), Expect = 0.48, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 36/85 (42%), Gaps = 6/85 (7%) Query: 34 PAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91 P ++ DAT G G + + +V D A+ ++ ++D+ SL + Sbjct: 18 ITPESIVADATCGNGNDTLFLAEQVPEGHVYGFDIQDLALENTRDKVKDF-NHVSLIKDG 76 Query: 92 FSQLQDYVPD---KGVDGVVFDLGV 113 ++ ++ D +D +F+LG Sbjct: 77 HENIEHHINDAHKGHIDAAIFNLGY 101 >gi|121534279|ref|ZP_01666103.1| Methyltransferase type 11 [Thermosinus carboxydivorans Nor1] gi|121307049|gb|EAX47967.1| Methyltransferase type 11 [Thermosinus carboxydivorans Nor1] Length = 229 Score = 40.2 bits (93), Expect = 0.48, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 3/84 (3%) Query: 26 EKVIALLNPAPGKVIL-DATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84 ++I L + + D G G Y+ FC G+ V+ +D P ++ E + + + Sbjct: 28 REMIFDLAEVQQDMYVADVGCGTGIYTNEFCAAGARVVGIDISPEMLAIAAEKNKTWGNR 87 Query: 85 FSLFQATFSQLQDYVPDKGVDGVV 108 S A + L PD D VV Sbjct: 88 VSFVTADAAALP--FPDNAFDMVV 109 >gi|288553841|ref|YP_003425776.1| SAM-dependent methyltransferase MraW family [Bacillus pseudofirmus OF4] gi|288545001|gb|ADC48884.1| SAM-dependent methyltransferase MraW family [Bacillus pseudofirmus OF4] Length = 190 Score = 40.2 bits (93), Expect = 0.49, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 43/99 (43%), Gaps = 15/99 (15%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETM- 78 LLE+ I+ PG + +D T G G+ F +V ++D A++ + + Sbjct: 13 LLERSIS-----PGDIAVDCTAGN-GHDTLFLANLVGNTGHVYSVDIQETAITNTKLKVG 66 Query: 79 -RDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGV 113 + + +L Q+ + +P + V G +F+LG Sbjct: 67 EAEVANRVTLHQSGHEHISTLIPKEEYGRVKGAIFNLGY 105 >gi|229544908|ref|ZP_04433633.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis TX1322] gi|229309800|gb|EEN75787.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis TX1322] gi|295113655|emb|CBL32292.1| 23S rRNA m(5)U-1939 methyltransferase [Enterococcus sp. 7L76] Length = 456 Score = 40.2 bits (93), Expect = 0.49, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 32/98 (32%), Gaps = 17/98 (17%) Query: 23 VLLEKVIALLNPAPGKVILD-----ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77 VL + I LN P + ++D T G S K V +D P A+ + Sbjct: 297 VLYNEGIKALNLQPNETVVDAYCGVGTIG-----LSLAKQAHQVRGMDTIPAAIDDARFN 351 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFD 110 + + +D +P D +V D Sbjct: 352 AKRLG--VTNTHYAVGTAEDLLPKWFKEGFKPDAIVVD 387 >gi|94502186|ref|ZP_01308683.1| sun protein [Oceanobacter sp. RED65] gi|94425689|gb|EAT10700.1| sun protein [Oceanobacter sp. RED65] Length = 234 Score = 40.2 bits (93), Expect = 0.49, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 3/86 (3%) Query: 32 LNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQFSLF 88 + P G++ILDA GG + + + + ALD D + E + + Sbjct: 41 MKPKEGELILDACCAPGGKTGHLLEASQGLAKITALDSDAKRLQRVHENLERLGYTAKVL 100 Query: 89 QATFSQLQDYVPDKGVDGVVFDLGVS 114 Q +++ + DG++ D+ S Sbjct: 101 QGEAQAPENWWDGQAFDGILLDVPCS 126 >gi|261601979|gb|ACX91582.1| Fmu (Sun) domain protein [Sulfolobus solfataricus 98/2] Length = 350 Score = 40.2 bits (93), Expect = 0.49, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 4/90 (4%) Query: 28 VIALLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84 V LL+P P + I+D T AGG + + +I D V ++ + Sbjct: 173 VAHLLDPHPNEKIVDMTAYAGGKLTH-IYQLEPRVKLIGFDHTEKKVEKLRDLANKMGMR 231 Query: 85 FSLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 +++A L + VD VV D S Sbjct: 232 IEIYKADSRYLYEDYKIGDVDKVVIDPPCS 261 >gi|240102589|ref|YP_002958898.1| SAM-dependent tRNA/rRNA cytosine-C5 methylase [Thermococcus gammatolerans EJ3] gi|239910143|gb|ACS33034.1| SAM-dependent tRNA/rRNA cytosine-C5 methylase [Thermococcus gammatolerans EJ3] Length = 443 Score = 40.2 bits (93), Expect = 0.49, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 35/83 (42%), Gaps = 4/83 (4%) Query: 32 LNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQFSL 87 L+P PG+ ++D GG + K + A D D + ++ +R E + Sbjct: 246 LSPEPGETVVDLAAAPGGKTAHMAELMKNEGKIYAFDVDSERIKRMKQILRWAGVEIAEV 305 Query: 88 FQATFSQLQDYVPDKGVDGVVFD 110 + + +++ +K D V+ D Sbjct: 306 KKLDGRKAPEFLGEKIADRVLLD 328 >gi|15897306|ref|NP_341911.1| Sun (fmu) protein (sun-1) [Sulfolobus solfataricus P2] gi|284174558|ref|ZP_06388527.1| Sun (fmu) protein (sun-1) [Sulfolobus solfataricus 98/2] gi|13813517|gb|AAK40701.1| Sun (fmu) protein (sun-1) [Sulfolobus solfataricus P2] Length = 327 Score = 40.2 bits (93), Expect = 0.49, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 4/90 (4%) Query: 28 VIALLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84 V LL+P P + I+D T AGG + + +I D V ++ + Sbjct: 150 VAHLLDPHPNEKIVDMTAYAGGKLTH-IYQLEPRVKLIGFDHTEKKVEKLRDLANKMGMR 208 Query: 85 FSLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 +++A L + VD VV D S Sbjct: 209 IEIYKADSRYLYEDYKIGDVDKVVIDPPCS 238 >gi|319401067|gb|EFV89286.1| rRNA methylase family protein [Staphylococcus epidermidis FRI909] Length = 187 Score = 40.2 bits (93), Expect = 0.50, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 6/85 (7%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91 V++DAT G G + F + N V D A+ + +++Y L Q+ Sbjct: 18 INHNSVVIDATCGNGNDTAYFAQHVPNGFVYGFDIQEQAILNTHKKIKNY-SNVKLIQSG 76 Query: 92 FSQLQDYVPDK---GVDGVVFDLGV 113 + ++P + +D +F+LG Sbjct: 77 HENAKLHIPSEHHGHIDAAIFNLGY 101 >gi|319897839|ref|YP_004136036.1| 16S rRNA m5c967 methyltransferase, s-adenosyl-l-methionine-dependent [Haemophilus influenzae F3031] gi|317433345|emb|CBY81723.1| 16S rRNA m5C967 methyltransferase,S-adenosyl-L-methionine-dependent [Haemophilus influenzae F3031] Length = 451 Score = 40.2 bits (93), Expect = 0.50, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 7/91 (7%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88 LL P + ILDA GG + ++ NVIALD + + +E + +Q + Sbjct: 253 LLEPKNEEWILDACAAPGGKTTHILELAPQANVIALDVETHRLKRVEENLERLNQQAIVV 312 Query: 89 QATFSQLQDYVPDKG-----VDGVVFDLGVS 114 S+ +++ + G D ++ D S Sbjct: 313 CGDASKPDEWLAEIGKSAAKFDRILLDAPCS 343 >gi|301155309|emb|CBW14775.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Haemophilus parainfluenzae T3T1] Length = 445 Score = 40.2 bits (93), Expect = 0.51, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 2/82 (2%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88 LL P G++ILDA GG + +M VIALD + + +E + +Q ++ Sbjct: 247 LLEPQNGELILDACAAPGGKTTHILEMAPQAKVIALDVEAHRLKRVEENLTRLNQQATVV 306 Query: 89 QATFSQLQDYVPDKGVDGVVFD 110 ++ + ++ + G++G FD Sbjct: 307 CGDATEPEKWLSEIGLNGASFD 328 >gi|195110597|ref|XP_001999866.1| GI24763 [Drosophila mojavensis] gi|193916460|gb|EDW15327.1| GI24763 [Drosophila mojavensis] Length = 453 Score = 40.2 bits (93), Expect = 0.51, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 2/60 (3%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96 VI+DA G GG + F VIA+D D ++ ++ Y + A F Q Sbjct: 287 VIVDAFCGCGGNAIQFANTCGRVIAIDIDLKKLAMAKQNASIYGVAHKIDFVHADFLQFA 346 >gi|46907893|ref|YP_014282.1| hypothetical protein LMOf2365_1686 [Listeria monocytogenes serotype 4b str. F2365] gi|46881162|gb|AAT04459.1| conserved hypothetical protein [Listeria monocytogenes serotype 4b str. F2365] Length = 192 Score = 40.2 bits (93), Expect = 0.51, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 8/86 (9%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK--EQFSL 87 PG ++DAT G G+ +V+ D AV + + + Q L Sbjct: 18 VRPGDYVIDATCGN-GHDTLLLAELVGINGHVLGFDIQQMAVDETKARLENAGVSSQVEL 76 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGV 113 A+ +++ Y + V +F+LG Sbjct: 77 VCASHARIPAY-TSRPVRAAIFNLGY 101 >gi|117926743|ref|YP_867360.1| Fmu (Sun) domain-containing protein [Magnetococcus sp. MC-1] gi|117610499|gb|ABK45954.1| Fmu (Sun) domain protein [Magnetococcus sp. MC-1] Length = 404 Score = 40.2 bits (93), Expect = 0.51, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 46/119 (38%), Gaps = 21/119 (17%) Query: 15 HTIGDHVPVLLE----------KVIA-LLNPAPGKVILDATFGAGG---YSRSFCKMGSN 60 H + DH PV LE + IA LL P G++++D G GG + + + Sbjct: 181 HLLRDH-PVFLEGLAEIQDGGSQCIAPLLQPVAGQLLVDFCAGGGGKTVHLAALMQNKGR 239 Query: 61 VIALDRDPFAVSCGQETMRDYKEQFSLF--QATFSQLQDYVPDK--GVDGVVFDLGVSS 115 ++ALD + ++ + Q + + ++ DGV+ D S Sbjct: 240 ILALDTQEHRLKRLAPRLK--RNQIKMVQSHTIRHERDPWLSRWYGKADGVLVDAPCSG 296 >gi|260899635|ref|ZP_05908030.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio parahaemolyticus AQ4037] gi|308110556|gb|EFO48096.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio parahaemolyticus AQ4037] Length = 439 Score = 40.2 bits (93), Expect = 0.52, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 3/90 (3%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR-DYK 82 ++E+ I L+P + +LD G G +S K +V+ ++ V + Sbjct: 281 MVEQAIEWLDPQSDERVLDLFCGLGNFSLPIAKRAKHVVGVEGVAEMVEKASNNASLNQI 340 Query: 83 EQFSLFQATFSQLQD--YVPDKGVDGVVFD 110 + A Q D + D V+ D Sbjct: 341 NNAQFYHANLEQDFDGQAWAAENFDKVLLD 370 >gi|319427232|gb|ADV55306.1| RNA methyltransferase, TrmA family [Shewanella putrefaciens 200] Length = 450 Score = 40.2 bits (93), Expect = 0.52, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 2/89 (2%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82 ++ + + L PAP + ILD G G +S KMG+ VI ++ VS + + Sbjct: 292 MVAQAMDWLAPAPDERILDLFCGMGNFSLPLAKMGAEVIGVEGVAEMVSQARVNAKANNL 351 Query: 83 EQFSLFQATFSQLQDYVPDKG-VDGVVFD 110 ++ + + S P G +D ++ D Sbjct: 352 DKLTFYHGDLSADLSLEPWMGKIDKLLLD 380 >gi|258545467|ref|ZP_05705701.1| ribosomal RNA small subunit methyltransferase B [Cardiobacterium hominis ATCC 15826] gi|258519300|gb|EEV88159.1| ribosomal RNA small subunit methyltransferase B [Cardiobacterium hominis ATCC 15826] Length = 418 Score = 40.2 bits (93), Expect = 0.52, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 2/87 (2%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88 LL P G+ ILDA GG + ++ ++ALD D + QE + + +L Sbjct: 227 LLAPQNGEHILDACAAPGGKTGHLLELAPTAELLALDHDRDRLVRVQENLDRLGLRATLK 286 Query: 89 QATFSQLQDYVPDKGVDGVVFDLGVSS 115 A + + K D ++ D S Sbjct: 287 AADAADTAAWWDGKPFDAILLDAPCSG 313 >gi|193203170|ref|NP_001122517.1| hypothetical protein T08G11.4 [Caenorhabditis elegans] gi|159572236|emb|CAP19342.1| C. elegans protein T08G11.4b, confirmed by transcript evidence [Caenorhabditis elegans] Length = 495 Score = 40.2 bits (93), Expect = 0.53, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 42/115 (36%), Gaps = 18/115 (15%) Query: 42 DATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQL---- 95 DA G GG + F G++VIA+D DP + C +E R Y A F + Sbjct: 325 DAFTGVGGNAIQFALRGAHVIAIDMDPVRLKCARENARVYGVENYIDFICADFFDVAATW 384 Query: 96 -QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS--CSGISASDV 147 D VD V S S+ K+ D+ +GI DV Sbjct: 385 QADKKLAPKVDAVFL-----SPPWGGP----SYLKAKEFDLATGCCPNGIDIFDV 430 >gi|17508967|ref|NP_492400.1| hypothetical protein T08G11.4 [Caenorhabditis elegans] gi|5824602|emb|CAB02307.2| C. elegans protein T08G11.4a, confirmed by transcript evidence [Caenorhabditis elegans] Length = 566 Score = 40.2 bits (93), Expect = 0.53, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 42/115 (36%), Gaps = 18/115 (15%) Query: 42 DATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQL---- 95 DA G GG + F G++VIA+D DP + C +E R Y A F + Sbjct: 396 DAFTGVGGNAIQFALRGAHVIAIDMDPVRLKCARENARVYGVENYIDFICADFFDVAATW 455 Query: 96 -QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS--CSGISASDV 147 D VD V S S+ K+ D+ +GI DV Sbjct: 456 QADKKLAPKVDAVFL-----SPPWGGP----SYLKAKEFDLATGCCPNGIDIFDV 501 >gi|302676902|ref|XP_003028134.1| hypothetical protein SCHCODRAFT_28617 [Schizophyllum commune H4-8] gi|300101822|gb|EFI93231.1| hypothetical protein SCHCODRAFT_28617 [Schizophyllum commune H4-8] Length = 258 Score = 40.2 bits (93), Expect = 0.53, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 2/61 (3%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96 ILDA G GG + +F + VIALD DP ++ + + Y ++ + Sbjct: 68 TILDAFCGVGGNAIAFAQTCQRVIALDTDPTRLALARHNAQIYGVADRIEFILTDYVAFA 127 Query: 97 D 97 + Sbjct: 128 E 128 >gi|294638022|ref|ZP_06716282.1| ribosomal RNA small subunit methyltransferase B [Edwardsiella tarda ATCC 23685] gi|291088814|gb|EFE21375.1| ribosomal RNA small subunit methyltransferase B [Edwardsiella tarda ATCC 23685] Length = 430 Score = 40.2 bits (93), Expect = 0.53, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 36/89 (40%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQF 85 + LL+P G+ ILD GG + + V+A+D D + +E ++ ++Q Sbjct: 239 CVDLLDPHDGEQILDLCCAPGGKTTHILEAAPKAQVLAVDADEQRLKRVRENLQRLQQQA 298 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + + + D ++ D S Sbjct: 299 EVRCGDGRTPDAWANGRQFDRILLDAPCS 327 >gi|323341734|ref|ZP_08081967.1| SAM-dependent methyltransferase [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464159|gb|EFY09352.1| SAM-dependent methyltransferase [Erysipelothrix rhusiopathiae ATCC 19414] Length = 174 Score = 40.2 bits (93), Expect = 0.54, Method: Composition-based stats. Identities = 12/79 (15%), Positives = 33/79 (41%), Gaps = 2/79 (2%) Query: 35 APGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQ 94 +++D T G G + +V A+D A+ ++ +++ + + S+ Sbjct: 16 NKDSIVVDMTCGNGYDTHFLANHAGHVYAIDIQEEAILSSKQLNQNF-SNITYIHSDHSR 74 Query: 95 LQDYVPDKGVDGVVFDLGV 113 + ++ G +++LG Sbjct: 75 V-NFEEKAPFTGAIYNLGY 92 >gi|259047667|ref|ZP_05738068.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Granulicatella adiacens ATCC 49175] gi|259035858|gb|EEW37113.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Granulicatella adiacens ATCC 49175] Length = 467 Score = 39.8 bits (92), Expect = 0.55, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 37/91 (40%), Gaps = 3/91 (3%) Query: 23 VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82 VL ++ I + G+ ++DA G G S +F + V A++ A+ +E + Sbjct: 306 VLYQQAIDAADLKGGETVVDAYCGIGTMSLAFARDAKKVYAMEIVDDAIVMAKENAKLNG 365 Query: 83 -EQFSLFQATFSQLQDYVPDKGV--DGVVFD 110 ++ ++G+ D +V D Sbjct: 366 VTNVHFETGAAEKIMPRWKEEGIQPDVIVVD 396 >gi|225027670|ref|ZP_03716862.1| hypothetical protein EUBHAL_01929 [Eubacterium hallii DSM 3353] gi|224954984|gb|EEG36193.1| hypothetical protein EUBHAL_01929 [Eubacterium hallii DSM 3353] Length = 191 Score = 39.8 bits (92), Expect = 0.55, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 33/78 (42%), Gaps = 5/78 (6%) Query: 41 LDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETM--RDYKEQFSLFQATFSQL 95 +DAT G G + K+ VI++D A+ ++ + ++ + + + + Sbjct: 26 IDATAGTGKDTVFLAKLVGEKGRVISMDIQEMAIEQTKKRLLKERLSDRAEVVLDSHAHM 85 Query: 96 QDYVPDKGVDGVVFDLGV 113 Y V ++F+LG Sbjct: 86 DKYAQKDSVSLIMFNLGY 103 >gi|160876396|ref|YP_001555712.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella baltica OS195] gi|226725388|sp|A9KYI1|RUMA_SHEB9 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|160861918|gb|ABX50452.1| RNA methyltransferase, TrmA family [Shewanella baltica OS195] gi|315268586|gb|ADT95439.1| RNA methyltransferase, TrmA family [Shewanella baltica OS678] Length = 450 Score = 39.8 bits (92), Expect = 0.55, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 2/89 (2%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82 ++ + + L PAP + ILD G G +S KMG++VI ++ V+ + + Sbjct: 292 MVAQAMDWLAPAPDERILDLFCGMGNFSLPLAKMGADVIGVEGVAEMVTQARVNAKANNL 351 Query: 83 EQFSLFQATFSQLQDYVPDKG-VDGVVFD 110 ++ + + S P G +D ++ D Sbjct: 352 DKLTFYHGDLSADLSLEPWMGKIDKLLLD 380 >gi|304410178|ref|ZP_07391797.1| RNA methyltransferase, TrmA family [Shewanella baltica OS183] gi|307302111|ref|ZP_07581869.1| RNA methyltransferase, TrmA family [Shewanella baltica BA175] gi|304351587|gb|EFM15986.1| RNA methyltransferase, TrmA family [Shewanella baltica OS183] gi|306914149|gb|EFN44570.1| RNA methyltransferase, TrmA family [Shewanella baltica BA175] Length = 450 Score = 39.8 bits (92), Expect = 0.55, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 2/89 (2%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82 ++ + + L PAP + ILD G G +S KMG++VI ++ V+ + + Sbjct: 292 MVAQAMDWLAPAPDERILDLFCGMGNFSLPLAKMGADVIGVEGVAEMVTQARVNAKANNL 351 Query: 83 EQFSLFQATFSQLQDYVPDKG-VDGVVFD 110 ++ + + S P G +D ++ D Sbjct: 352 DKLTFYHGDLSADLSLEPWMGKIDKLLLD 380 >gi|217972409|ref|YP_002357160.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella baltica OS223] gi|254766921|sp|B8E8S1|RUMA_SHEB2 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|217497544|gb|ACK45737.1| RNA methyltransferase, TrmA family [Shewanella baltica OS223] Length = 450 Score = 39.8 bits (92), Expect = 0.55, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 2/89 (2%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82 ++ + + L PAP + ILD G G +S KMG++VI ++ V+ + + Sbjct: 292 MVAQAMDWLAPAPDERILDLFCGMGNFSLPLAKMGADVIGVEGVAEMVTQARVNAKANNL 351 Query: 83 EQFSLFQATFSQLQDYVPDKG-VDGVVFD 110 ++ + + S P G +D ++ D Sbjct: 352 DKLTFYHGDLSADLSLEPWMGKIDKLLLD 380 >gi|147677534|ref|YP_001211749.1| tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Pelotomaculum thermopropionicum SI] gi|146273631|dbj|BAF59380.1| tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Pelotomaculum thermopropionicum SI] Length = 192 Score = 39.8 bits (92), Expect = 0.55, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 33/86 (38%), Gaps = 6/86 (6%) Query: 33 NPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK--EQFSL 87 + G +DAT G G + + V A D A+ + + + L Sbjct: 19 SVRNGGTAVDATAGNGNDTLFLAGLVGPEGLVYAFDIQEKALQATRSALEKAGMSGRVVL 78 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGV 113 +A +++ V VD V+F+LG Sbjct: 79 VRAGHEEMEKIVRGP-VDAVIFNLGY 103 >gi|319775433|ref|YP_004137921.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Haemophilus influenzae F3047] gi|317450024|emb|CBY86238.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Haemophilus influenzae F3047] Length = 451 Score = 39.8 bits (92), Expect = 0.56, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 7/91 (7%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88 LL P + ILDA GG + ++ NVIALD + + +E + +Q + Sbjct: 253 LLEPKNEEWILDACAAPGGKTTHILELAPQANVIALDVESHRLKRVEENLERLNQQAIVV 312 Query: 89 QATFSQLQDYVPDKG-----VDGVVFDLGVS 114 S+ +++ + G D ++ D S Sbjct: 313 CGDASKPDEWLAEIGKSAAKFDRILLDAPCS 343 >gi|317496230|ref|ZP_07954590.1| SAM-dependent methyltransferase [Gemella moribillum M424] gi|316913805|gb|EFV35291.1| SAM-dependent methyltransferase [Gemella moribillum M424] Length = 185 Score = 39.8 bits (92), Expect = 0.56, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 41/92 (44%), Gaps = 9/92 (9%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMR--DY 81 L++VI +++DAT G G + + + V A D A+ + ++ + Sbjct: 12 LKEVID-----KNSIVVDATCGNGNDTLFLAQSAAKKVYAFDIQQQAIDSTLKLLQTNNC 66 Query: 82 KEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 E+ + + S +Y+ + + VVF+LG Sbjct: 67 LEKCEVILDSHSNFDNYISEP-IKAVVFNLGY 97 >gi|159108485|ref|XP_001704513.1| Hypothetical protein GL50803_5613 [Giardia lamblia ATCC 50803] gi|157432578|gb|EDO76839.1| hypothetical protein GL50803_5613 [Giardia lamblia ATCC 50803] Length = 258 Score = 39.8 bits (92), Expect = 0.56, Method: Composition-based stats. Identities = 36/160 (22%), Positives = 59/160 (36%), Gaps = 36/160 (22%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83 ++ V+ALL P ++D T GG +R K +A++RDP Sbjct: 51 MMRTVLALLG-KPPYAVIDGTACVGGDTRLLAKHFDMTVAIERDPE-------------- 95 Query: 84 QFSLFQATFSQLQDYVPDKGVDG--VVFDLGVSSMQIDC---GDRGFSFQKSGP------ 132 T++ LQD + GVD + D Q FS P Sbjct: 96 -------TYALLQDNLTTWGVDAKTISGDTAALIPQFWTLIGAVATFSLYLDPPWGGVDY 148 Query: 133 ---LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQA 169 D++++ ++ DVVN+A L+ L +L + Sbjct: 149 RSQTDIQLTLGSLAVEDVVNRAFEAHLSMKLAVLKLPRNY 188 >gi|183982927|ref|YP_001851218.1| SAM-dependent methyltransferase [Mycobacterium marinum M] gi|183176253|gb|ACC41363.1| SAM-dependent methyltransferase [Mycobacterium marinum M] Length = 252 Score = 39.8 bits (92), Expect = 0.57, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 24/51 (47%) Query: 30 ALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRD 80 L PG ++D GAG ++ + G++V+A DRD + +R Sbjct: 7 DRLGIGPGATVIDVGCGAGRHAFEAYRCGADVVAFDRDAAELRAVDTMLRA 57 >gi|220928577|ref|YP_002505486.1| methyltransferase type 11 [Clostridium cellulolyticum H10] gi|219998905|gb|ACL75506.1| Methyltransferase type 11 [Clostridium cellulolyticum H10] Length = 241 Score = 39.8 bits (92), Expect = 0.57, Method: Composition-based stats. Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 5/100 (5%) Query: 26 EKVIALL---NPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82 + I L P K +LD G GGYS + G NV A+D D V + ++ Sbjct: 19 NEQIDFLREIAGNPPKSVLDIACGTGGYSLELDRQGYNVTAVDLDMEMVRQLEIKAKENN 78 Query: 83 EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGD 122 + Q +LQ+ + D D +VF +G S + ++ + Sbjct: 79 QSVRFMQGNMLELQNKITD-SFD-LVFCIGNSIVHLENLE 116 >gi|54026743|ref|YP_120985.1| hypothetical protein nfa47690 [Nocardia farcinica IFM 10152] gi|54018251|dbj|BAD59621.1| hypothetical protein [Nocardia farcinica IFM 10152] Length = 356 Score = 39.8 bits (92), Expect = 0.57, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 25/82 (30%), Gaps = 7/82 (8%) Query: 32 LNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCGQETM--RDYKEQFSL 87 L PG + D FG G S + + +I D D +V E ++ Sbjct: 169 LLGRPGARVADVGFGGGWSSIALAQAFPELIVDGFDVDEPSVRMATEHAATAGVGDRVRF 228 Query: 88 FQATFSQLQDYVPDKGVDGVVF 109 + + + D V Sbjct: 229 H---LADAATALTEHAYDAVFA 247 >gi|309973883|gb|ADO97084.1| 16S rRNA m5C967 methyltransferase [Haemophilus influenzae R2846] Length = 451 Score = 39.8 bits (92), Expect = 0.57, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 7/91 (7%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88 LL P + ILDA GG + ++ NVIALD + + +E + +Q + Sbjct: 253 LLEPKNEEWILDACAAPGGKTTHILELAPQANVIALDVESHRLKRVEENLERLNQQAIVV 312 Query: 89 QATFSQLQDYVPDKG-----VDGVVFDLGVS 114 S+ +++ + G D ++ D S Sbjct: 313 CGDASKPDEWLAEIGKSAAKFDRILLDAPCS 343 >gi|16272567|ref|NP_438784.1| sun protein [Haemophilus influenzae Rd KW20] gi|260581533|ref|ZP_05849340.1| ribosomal RNA small subunit methyltransferase B [Haemophilus influenzae RdAW] gi|1169716|sp|P44788|RSMB_HAEIN RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|1573620|gb|AAC22284.1| sun protein (sun) [Haemophilus influenzae Rd KW20] gi|260091807|gb|EEW75763.1| ribosomal RNA small subunit methyltransferase B [Haemophilus influenzae RdAW] Length = 451 Score = 39.8 bits (92), Expect = 0.57, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 7/91 (7%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88 LL P + ILDA GG + ++ NVIALD + + +E + +Q + Sbjct: 253 LLEPKNEEWILDACAAPGGKTTHILELAPQANVIALDVESHRLKRVEENLERLNQQAIVV 312 Query: 89 QATFSQLQDYVPDKG-----VDGVVFDLGVS 114 S+ +++ + G D ++ D S Sbjct: 313 CGDASKPDEWLAEIGKSAAKFDRILLDAPCS 343 >gi|85716334|ref|ZP_01047307.1| dimethyladenosine transferase [Nitrobacter sp. Nb-311A] gi|85696850|gb|EAQ34735.1| dimethyladenosine transferase [Nitrobacter sp. Nb-311A] Length = 284 Score = 39.8 bits (92), Expect = 0.57, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 1/52 (1%) Query: 46 GAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ 96 G GG +R+ G+ +VIA++RD A+ +E Y ++ ++ + Sbjct: 57 GPGGLTRALLAAGAKHVIAIERDERALGPLEEISDRYPDRLTIVNGDATNFD 108 >gi|224542049|ref|ZP_03682588.1| hypothetical protein CATMIT_01223 [Catenibacterium mitsuokai DSM 15897] gi|224524982|gb|EEF94087.1| hypothetical protein CATMIT_01223 [Catenibacterium mitsuokai DSM 15897] Length = 171 Score = 39.8 bits (92), Expect = 0.58, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 33/77 (42%), Gaps = 7/77 (9%) Query: 38 KVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ 96 ++ +D T G G+ +++ + V + D A+ +E + ++ L + Sbjct: 19 EIGVDFTMGN-GHDTKALIECCKEVYSFDIQEEALIHTRELV---GDKAHLIHDSHENFD 74 Query: 97 DYVPDKGVDGVVFDLGV 113 YV + G+ F+LG Sbjct: 75 HYVDTFDI-GI-FNLGY 89 >gi|255020470|ref|ZP_05292535.1| 23S rRNA (uracil-5-) -methyltransferase rumA [Acidithiobacillus caldus ATCC 51756] gi|254970080|gb|EET27577.1| 23S rRNA (uracil-5-) -methyltransferase rumA [Acidithiobacillus caldus ATCC 51756] Length = 440 Score = 39.8 bits (92), Expect = 0.59, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 4/93 (4%) Query: 22 PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRD--PFAVSCGQETMR 79 PVL+ + +ALL P PG+ I+D G G ++ ++G+ + ++ D A + + Sbjct: 280 PVLVRRAMALLAPEPGEEIVDLFCGLGNFTLPMARLGARALGVEGDTRLVAQARFNAELN 339 Query: 80 DYKEQFSLFQATFSQ--LQDYVPDKGVDGVVFD 110 + A +Q L D GV ++ D Sbjct: 340 GLAARAHFIAADLTQTALADLPGAAGVRKMLID 372 >gi|217964188|ref|YP_002349866.1| methylase protein [Listeria monocytogenes HCC23] gi|217333458|gb|ACK39252.1| methylase protein [Listeria monocytogenes HCC23] gi|307571245|emb|CAR84424.1| S-adenosylmethionine (SAM)-dependent methyltransferase [Listeria monocytogenes L99] Length = 191 Score = 39.8 bits (92), Expect = 0.59, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 8/86 (9%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK--EQFSL 87 PG ++DAT G G+ +V+ D AV + + + Q L Sbjct: 18 VRPGDYVIDATCGN-GHDTLLLAELVGINGHVLGFDIQQVAVDATKARLENAGVSSQVEL 76 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGV 113 A+ +++ Y + V +F+LG Sbjct: 77 VCASHARIPVY-TSRPVRAAIFNLGY 101 >gi|149910033|ref|ZP_01898681.1| ribosomal protein L11 methyltransferase [Moritella sp. PE36] gi|149806901|gb|EDM66862.1| ribosomal protein L11 methyltransferase [Moritella sp. PE36] Length = 293 Score = 39.8 bits (92), Expect = 0.59, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 15/89 (16%) Query: 28 VIALLNPAP--GKVILDATFGAGGYSRSF--CKMGS-NVIALDRDPFAVSCGQETMRDYK 82 + L+ GK ++D FG G + K+G+ VI +D DP A+ ++ Sbjct: 148 CLEWLDGQDLTGKTVVD--FGCGSGILAIAALKLGAKRVIGVDIDPQAILASRDNAER-- 203 Query: 83 EQFSLFQATFSQLQDYVPDKGVDGVVFDL 111 Q++ Y+P DG+ D+ Sbjct: 204 ------NGVADQIELYLPADQPDGIKADI 226 >gi|229846677|ref|ZP_04466785.1| sun protein [Haemophilus influenzae 7P49H1] gi|229810770|gb|EEP46488.1| sun protein [Haemophilus influenzae 7P49H1] Length = 451 Score = 39.8 bits (92), Expect = 0.60, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 7/91 (7%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88 LL P + ILDA GG + ++ NVIALD + + +E + +Q + Sbjct: 253 LLEPKNEEWILDACAAPGGKTTHILELAPQSNVIALDVETHRLKRVEENLERLNQQAIVV 312 Query: 89 QATFSQLQDYVPDKG-----VDGVVFDLGVS 114 S+ +++ + G D ++ D S Sbjct: 313 CGDASKPDEWLAEIGKSAAKFDRILLDSPCS 343 >gi|168487256|ref|ZP_02711764.1| SAM-dependent methyltransferase [Streptococcus pneumoniae CDC1087-00] gi|183569859|gb|EDT90387.1| SAM-dependent methyltransferase [Streptococcus pneumoniae CDC1087-00] Length = 185 Score = 39.8 bits (92), Expect = 0.60, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 10/91 (10%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82 L +V+ +++DAT G G+ + K+ V A D A+ QE + Sbjct: 12 LAEVV----TKED-IVVDATMGN-GHDTLFLAKLAKKVYAFDIQKQALEKTQERLHQAGL 65 Query: 83 EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 L L +V G+ F+LG Sbjct: 66 TNAQLILQGHETLDQFVTKAKA-GI-FNLGY 94 >gi|20093603|ref|NP_613450.1| SAM-dependent methyltransferase [Methanopyrus kandleri AV19] gi|19886465|gb|AAM01380.1| SAM-dependent methyltransferase [Methanopyrus kandleri AV19] Length = 182 Score = 39.8 bits (92), Expect = 0.60, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 4/77 (5%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQAT 91 G ++DA G G + + +MG V+A+D DP + + +Y + A Sbjct: 37 VEEGDFVVDAGTGNGVVAIAAAEMGCEVLAVDVDPEMIDMARRNAEEYGVEDSIEFVVAD 96 Query: 92 FSQLQDYVPDKGVDGVV 108 +L + V VD V+ Sbjct: 97 ARELPELVD--NVDAVL 111 >gi|167628430|ref|YP_001678929.1| sam-dependent methyltransferase, putative [Heliobacterium modesticaldum Ice1] gi|167591170|gb|ABZ82918.1| sam-dependent methyltransferase, putative [Heliobacterium modesticaldum Ice1] Length = 243 Score = 39.8 bits (92), Expect = 0.61, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 12/69 (17%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRD 80 L +V+ PG +DAT G G+ F G ++ A D A+ + + Sbjct: 15 LAEVLE-----PGDFAIDATAGN-GHDTLFLARQVLPGGDLWAFDIQEAAIDATARRLTE 68 Query: 81 YK--EQFSL 87 ++F + Sbjct: 69 AGLADRFEI 77 >gi|298368465|ref|ZP_06979783.1| rRNA methylase [Neisseria sp. oral taxon 014 str. F0314] gi|298282468|gb|EFI23955.1| rRNA methylase [Neisseria sp. oral taxon 014 str. F0314] Length = 186 Score = 39.8 bits (92), Expect = 0.62, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 30/82 (36%), Gaps = 5/82 (6%) Query: 35 APGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91 G LD T G G+ G V A D P A+ + + + L Sbjct: 19 KNGDAALDGTAGN-GHDTLLLAQCVGGGKVWAFDVQPQALQQTRRRLEEAGVSAELICDG 77 Query: 92 FSQLQDYVPDKGVDGVVFDLGV 113 +L DYV D+ + VF+ G Sbjct: 78 HEKLADYV-DRPLTAAVFNFGW 98 >gi|145639370|ref|ZP_01794975.1| methionyl-tRNA formyltransferase [Haemophilus influenzae PittII] gi|145271417|gb|EDK11329.1| methionyl-tRNA formyltransferase [Haemophilus influenzae PittII] Length = 451 Score = 39.8 bits (92), Expect = 0.62, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 7/91 (7%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88 LL P + ILDA GG + ++ NVIALD + + +E + +Q + Sbjct: 253 LLEPKNEEWILDACAAPGGKTTHILELAPQSNVIALDVETHRLKRVEENLERLNQQAIVV 312 Query: 89 QATFSQLQDYVPDKG-----VDGVVFDLGVS 114 S+ +++ + G D ++ D S Sbjct: 313 CGDASKPDEWLAEIGKSAAKFDRILLDSPCS 343 >gi|144897574|emb|CAM74438.1| Ribosomal RNA adenine methylase transferase [Magnetospirillum gryphiswaldense MSR-1] Length = 279 Score = 39.8 bits (92), Expect = 0.62, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%) Query: 46 GAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSLF 88 G GG +R+ + +VIA++RD A++ E M Y + + Sbjct: 55 GPGGLTRALLDNDARHVIAIERDDRAIAIQNEIMAAYPGRLEII 98 >gi|16800839|ref|NP_471107.1| hypothetical protein lin1771 [Listeria innocua Clip11262] gi|16414258|emb|CAC97002.1| lin1771 [Listeria innocua Clip11262] Length = 191 Score = 39.8 bits (92), Expect = 0.62, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 8/86 (9%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK--EQFSL 87 G ++DAT G G+ +V+ D A+ + + + Q L Sbjct: 18 VRSGDYVIDATCGN-GHDTLLLAELVGVNGHVLGFDIQQMAIDATKTRLENAGVASQVEL 76 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGV 113 A+ + + +Y V +F+LG Sbjct: 77 VCASHALIPEYATKP-VRAAIFNLGY 101 >gi|311744474|ref|ZP_07718275.1| type 11 methyltransferase [Aeromicrobium marinum DSM 15272] gi|311312279|gb|EFQ82195.1| type 11 methyltransferase [Aeromicrobium marinum DSM 15272] Length = 237 Score = 39.8 bits (92), Expect = 0.63, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 18/51 (35%) Query: 30 ALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRD 80 L G +D GAG +S + G+ V A D D + E Sbjct: 7 DRLRVGRGTRFIDVGAGAGRHSYEALRRGAEVTAFDMDEVELKNVDEMFAA 57 >gi|182626337|ref|ZP_02954092.1| conserved hypothetical protein [Clostridium perfringens D str. JGS1721] gi|177908356|gb|EDT70901.1| conserved hypothetical protein [Clostridium perfringens D str. JGS1721] Length = 183 Score = 39.8 bits (92), Expect = 0.63, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 5/76 (6%) Query: 39 VILDATFGAGGYSRSFC-KMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD 97 + +DAT G G+ F ++ V A D AV+ + KE + + + Sbjct: 25 IAIDATLGN-GHDCDFLSELFKKVYAFDIQEEAVNSYK---SKNKENVEVILDSHENFET 80 Query: 98 YVPDKGVDGVVFDLGV 113 Y+ ++ V+ +V++LG Sbjct: 81 YIKEENVECIVYNLGY 96 >gi|255085586|ref|XP_002505224.1| predicted protein [Micromonas sp. RCC299] gi|226520493|gb|ACO66482.1| predicted protein [Micromonas sp. RCC299] Length = 226 Score = 39.8 bits (92), Expect = 0.64, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 39/98 (39%), Gaps = 19/98 (19%) Query: 35 APGKVILDATFGAGGYSRSFCKMG--------------SNVIALDRDPFAVSCGQETMR- 79 PG ++DAT G G + + ++ V+A D A++ + +R Sbjct: 40 RPGDTVVDATMGNGWDTVALARILADLDASPAGDASKPGRVVAFDVQEDALTSTRARVRE 99 Query: 80 ----DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 D + L + +++++V V V F+LG Sbjct: 100 MLTPDQASRVDLVLKSHERMEEHVRTDAVGVVCFNLGY 137 >gi|153839832|ref|ZP_01992499.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio parahaemolyticus AQ3810] gi|149746649|gb|EDM57637.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio parahaemolyticus AQ3810] Length = 439 Score = 39.8 bits (92), Expect = 0.65, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 3/90 (3%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR-DYK 82 ++E+ I L+P + +LD G G +S K +V+ ++ V + Sbjct: 281 MVEQAIEWLDPQSDERVLDLFCGLGNFSLPIAKRAKHVVGVEGVAEMVEKASNNASLNQI 340 Query: 83 EQFSLFQATFSQLQD--YVPDKGVDGVVFD 110 + A Q D + D V+ D Sbjct: 341 NNAQFYHANLEQDFDGQAWAAEKFDKVLLD 370 >gi|18977629|ref|NP_578986.1| nol1-nop2-sun family nucleolar protein III [Pyrococcus furiosus DSM 3638] gi|18893351|gb|AAL81381.1| putative nucleolar protein III (nol1-nop2-sun family) [Pyrococcus furiosus DSM 3638] Length = 310 Score = 39.8 bits (92), Expect = 0.65, Method: Composition-based stats. Identities = 18/111 (16%), Positives = 40/111 (36%), Gaps = 14/111 (12%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETMRDYKE-QFS 86 L+P PG+++ D GG + ++ N + A D D + + + Sbjct: 107 ALDPKPGEIVADMAAAPGGKTSYMAQLMENKGLIFAFDVDEERLKETRLNLSRLGVLNTI 166 Query: 87 LFQATFSQLQDYVPDKGVDGVVFDL---GVSSMQIDCGDRGFSFQKSGPLD 134 L + + + + D ++ D G ++ +R + + LD Sbjct: 167 LIHKSSLYIDEL--NMSFDKILLDAPCTGSGTIH-KNPER----KHNRTLD 210 >gi|14591177|ref|NP_143253.1| proliferating-cell nucleolar protein p120 [Pyrococcus horikoshii OT3] gi|3257797|dbj|BAA30480.1| 315aa long hypothetical proliferating-cell nucleolar protein p120 [Pyrococcus horikoshii OT3] Length = 315 Score = 39.8 bits (92), Expect = 0.65, Method: Composition-based stats. Identities = 16/100 (16%), Positives = 37/100 (37%), Gaps = 10/100 (10%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKE-QFS 86 L+P PG+++ D GG + ++ + A D D + + + Sbjct: 113 ALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVI 172 Query: 87 LFQATFSQLQDYVPDKGVDGVVFDL---GVSSMQIDCGDR 123 LF ++ + + + D ++ D G ++ +R Sbjct: 173 LFHSSSLHIGELNVE--FDKILLDAPCTGSGTIH-KNPER 209 >gi|328474127|gb|EGF44932.1| 23S rRNA m(5)U1939 methyltransferase [Vibrio parahaemolyticus 10329] Length = 439 Score = 39.8 bits (92), Expect = 0.65, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 3/90 (3%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR-DYK 82 ++E+ I L+P + +LD G G +S K +V+ ++ V + Sbjct: 281 MVEQAIEWLDPQSDERVLDLFCGLGNFSLPIAKRAKHVVGVEGVAEMVEKASNNASLNQI 340 Query: 83 EQFSLFQATFSQLQD--YVPDKGVDGVVFD 110 + A Q D + D V+ D Sbjct: 341 NNAQFYHANLEQDFDGQAWAAEKFDKVLLD 370 >gi|316976160|gb|EFV59496.1| 3-demethylubiquinone-9 3-methyltransferase [Trichinella spiralis] Length = 346 Score = 39.8 bits (92), Expect = 0.65, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 2/79 (2%) Query: 33 NPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQE--TMRDYKEQFSLFQA 90 P G ILD GAG S S ++G+ V+ +D + ++ +E + E F Sbjct: 156 KPLNGVKILDVGCGAGIMSESLARLGATVVGIDANSEGIALAKEHQRLAGLGENLKYFVC 215 Query: 91 TFSQLQDYVPDKGVDGVVF 109 + V + D +V Sbjct: 216 DVESVAQSVGESSFDAIVA 234 >gi|212634201|ref|YP_002310726.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella piezotolerans WP3] gi|226725392|sp|B8CJP2|RUMA_SHEPW RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|212555685|gb|ACJ28139.1| RNA methyltransferase, TrmA family [Shewanella piezotolerans WP3] Length = 445 Score = 39.8 bits (92), Expect = 0.65, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 2/89 (2%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82 ++ + + L P + +LD G G +S K G+ VI ++ P V + Sbjct: 287 MVNQAVDWLAPQANERVLDLFCGIGNFSLPLAKSGAEVIGVEGVPAMVEQATVNAKGAAL 346 Query: 83 EQFSLFQATFS-QLQDYVPDKGVDGVVFD 110 ++ S + A S L VD ++ D Sbjct: 347 DKVSFYHADLSADLSQQPWLGKVDKMLID 375 >gi|268315920|ref|YP_003289639.1| Fmu (Sun) domain-containing protein [Rhodothermus marinus DSM 4252] gi|262333454|gb|ACY47251.1| Fmu (Sun) domain protein [Rhodothermus marinus DSM 4252] Length = 434 Score = 39.8 bits (92), Expect = 0.66, Method: Composition-based stats. Identities = 15/98 (15%), Positives = 31/98 (31%), Gaps = 13/98 (13%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDR---DPFAVSCGQET 77 LL + PG+V++D G GG + + + + A D + Sbjct: 231 LLTEA------RPGQVVVDGCAGGGGKTLHLAALMEGKGRLYAFDIHEARLRELRPRTRR 284 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSS 115 + + + + + + D V+ D S Sbjct: 285 ADVHNVRLHVLPHNRASIVRRL-YGKADAVLVDAPCSG 321 >gi|223986106|ref|ZP_03636129.1| hypothetical protein HOLDEFILI_03437 [Holdemania filiformis DSM 12042] gi|223961911|gb|EEF66400.1| hypothetical protein HOLDEFILI_03437 [Holdemania filiformis DSM 12042] Length = 176 Score = 39.8 bits (92), Expect = 0.66, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 6/86 (6%) Query: 41 LDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP 100 +DAT G G + + NV+ALD AV Q+ + ++ QA ++L ++ Sbjct: 24 VDATCGGGNDTVFLAGLADNVLALDIQLEAVRKTQKKTAGF-TNVTVIQADHAELARWLT 82 Query: 101 DKGVDGVVFDLGV----SSMQIDCGD 122 +VF+LG SS I + Sbjct: 83 QP-AQIIVFNLGYLPYSSSPLITTPE 107 >gi|320167535|gb|EFW44434.1| Tgs1 protein [Capsaspora owczarzaki ATCC 30864] Length = 522 Score = 39.8 bits (92), Expect = 0.67, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 2/69 (2%) Query: 38 KVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQL 95 V++DA G GG + F VIA+D DP + C + R Y ++ A F + Sbjct: 336 GVVVDAFCGVGGNTIQFALSSHFVIAIDIDPRKIECARHNARLYGVEDRIEFIVADFFAV 395 Query: 96 QDYVPDKGV 104 + V Sbjct: 396 APRLRADVV 404 >gi|296104996|ref|YP_003615142.1| 16S rRNA methyltransferase B [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059455|gb|ADF64193.1| 16S rRNA methyltransferase B [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 438 Score = 39.8 bits (92), Expect = 0.67, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 37/89 (41%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85 + L P G+ ILD GG + ++ +V+A+D D +S + ++ + Sbjct: 247 CMTWLEPKNGEQILDLCAAPGGKTTHILEVAPQASVMAVDIDDQRLSRVYDNLKRLGMKA 306 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + Q + ++ + D ++ D S Sbjct: 307 QVKQGDGRKPTEWCGETQFDRILLDAPCS 335 >gi|293391667|ref|ZP_06636001.1| methionyl-tRNA formyltransferase [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952201|gb|EFE02320.1| methionyl-tRNA formyltransferase [Aggregatibacter actinomycetemcomitans D7S-1] Length = 451 Score = 39.8 bits (92), Expect = 0.67, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 2/82 (2%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88 LL P G++ILDA GG + ++ V+ALD + + +E + ++Q ++ Sbjct: 248 LLQPQNGELILDACAAPGGKTTHILELAPQAEVVALDVEENRLQRVKENLARMQQQATIV 307 Query: 89 QATFSQLQDYVPDKGVDGVVFD 110 + + ++ G V FD Sbjct: 308 CGDAANPRAWLTKLGKSAVRFD 329 >gi|261866823|ref|YP_003254745.1| methionyl-tRNA formyltransferase [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412155|gb|ACX81526.1| methionyl-tRNA formyltransferase [Aggregatibacter actinomycetemcomitans D11S-1] Length = 451 Score = 39.8 bits (92), Expect = 0.67, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 2/82 (2%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88 LL P G++ILDA GG + ++ V+ALD + + +E + ++Q ++ Sbjct: 248 LLQPQNGELILDACAAPGGKTTHILELAPQAEVVALDVEENRLQRVKENLARMQQQATIV 307 Query: 89 QATFSQLQDYVPDKGVDGVVFD 110 + + ++ G V FD Sbjct: 308 CGDAANPRAWLTKLGKSAVRFD 329 >gi|323135841|ref|ZP_08070924.1| dimethyladenosine transferase [Methylocystis sp. ATCC 49242] gi|322398932|gb|EFY01451.1| dimethyladenosine transferase [Methylocystis sp. ATCC 49242] Length = 300 Score = 39.8 bits (92), Expect = 0.68, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 2/63 (3%) Query: 46 GAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ--DYVPDKG 103 G GG +R+ G+ VIA++RD + E Y + ++ + ++ + V G Sbjct: 73 GPGGLTRALLAQGARVIAVERDARCLPALAEIAAHYPGRLTVVEGDALEIDAAELVRAHG 132 Query: 104 VDG 106 G Sbjct: 133 AGG 135 >gi|260893457|ref|YP_003239554.1| Methyltransferase type 11 [Ammonifex degensii KC4] gi|260865598|gb|ACX52704.1| Methyltransferase type 11 [Ammonifex degensii KC4] Length = 225 Score = 39.8 bits (92), Expect = 0.69, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 4/78 (5%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQA 90 LL+ PG+ +LDA G G SR+ G+ V +D P ++ +E + + Sbjct: 34 LLSLRPGEKVLDAGCGTGVVSRALAAAGAEVTGIDISPAMLAVARE--KGAGGNIVYLEG 91 Query: 91 TFSQLQDYVPDKGVDGVV 108 S L PD D VV Sbjct: 92 DMSSLP--FPDASFDAVV 107 >gi|238019301|ref|ZP_04599727.1| hypothetical protein VEIDISOL_01165 [Veillonella dispar ATCC 17748] gi|237864000|gb|EEP65290.1| hypothetical protein VEIDISOL_01165 [Veillonella dispar ATCC 17748] Length = 191 Score = 39.8 bits (92), Expect = 0.69, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 39/84 (46%), Gaps = 10/84 (11%) Query: 39 VILDATFGAGGYSRSFC----KMGSNVIALDRDPFAVSCGQETMR----DYKEQFSLFQA 90 V++DAT G G+ + + G ++ +D A++ QE ++ + Sbjct: 24 VVVDATCGN-GHDLLYLAERARKGCHLYGIDIQMKAINSSQELLQSNDIAEDVSLTFIHD 82 Query: 91 TFSQ-LQDYVPDKGVDGVVFDLGV 113 + + L + + D+ +D ++F+LG Sbjct: 83 SHDRALVNQLKDEVIDLMIFNLGY 106 >gi|313891156|ref|ZP_07824775.1| methyltransferase domain protein [Streptococcus pseudoporcinus SPIN 20026] gi|313120519|gb|EFR43639.1| methyltransferase domain protein [Streptococcus pseudoporcinus SPIN 20026] Length = 273 Score = 39.8 bits (92), Expect = 0.71, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 44/91 (48%), Gaps = 8/91 (8%) Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQET 77 +H LL+ + + L P +LD G G Y+R+ + S ++A D ++ + Sbjct: 73 NH---LLQAINSYLQPDRPITLLDVACGEGYYARALAQETSRQILAFDLSKDSILLAAK- 128 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGVDGVV 108 +D +++ + F ++L + D+ VD ++ Sbjct: 129 -KDLQKRVTWFVGDLAKLP--LADQSVDVIL 156 >gi|91977439|ref|YP_570098.1| dimethyladenosine transferase [Rhodopseudomonas palustris BisB5] gi|123735336|sp|Q135P2|RSMA_RHOPS RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|91683895|gb|ABE40197.1| dimethyladenosine transferase [Rhodopseudomonas palustris BisB5] Length = 287 Score = 39.8 bits (92), Expect = 0.71, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 6/61 (9%) Query: 42 DATF-----GAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95 D T G GG +R+ G+ VIA++RD A+ +E Y + + A Sbjct: 48 DVTVVEIGPGPGGLTRALLATGARRVIAIERDERALGALEEIAAHYPGRLEIVCADAMDF 107 Query: 96 Q 96 Sbjct: 108 D 108 >gi|284031682|ref|YP_003381613.1| deoxyribonuclease [Kribbella flavida DSM 17836] gi|283810975|gb|ADB32814.1| deoxyribonuclease/rho motif-related TRAM [Kribbella flavida DSM 17836] Length = 389 Score = 39.4 bits (91), Expect = 0.71, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 4/90 (4%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83 L++ V++ L P G+ LD G G ++ + G V+A++ D AV + + D Sbjct: 229 LVDAVLSGLEPREGETALDLYSGVGLFAAFLAEAGCGVLAVEGDRDAVKNARRNLHDLTG 288 Query: 84 QFSLFQATFSQLQDYVPDKG---VDGVVFD 110 +L Q ++ + +G VD VV D Sbjct: 289 -VTLEQGDVDRVLNRAVAQGLEHVDLVVLD 317 >gi|149375620|ref|ZP_01893389.1| Fmu, rRNA SAM-dependent methyltransferase [Marinobacter algicola DG893] gi|149360022|gb|EDM48477.1| Fmu, rRNA SAM-dependent methyltransferase [Marinobacter algicola DG893] Length = 433 Score = 39.4 bits (91), Expect = 0.71, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 3/90 (3%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMRDYKEQ 84 L++ APG+ +LDA GG + + + V+A+D + QE + Sbjct: 235 CTTLMDLAPGQRVLDACAAPGGKTCAILESCGELEEVVAIDESADRLPRVQENLERLDLM 294 Query: 85 FSLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 +L QA + + + K D ++ D+ S Sbjct: 295 ATLKQADAADIDQWWDRKPFDRILLDVPCS 324 >gi|120596855|ref|YP_961429.1| sun protein [Shewanella sp. W3-18-1] gi|120556948|gb|ABM22875.1| sun protein [Shewanella sp. W3-18-1] Length = 429 Score = 39.4 bits (91), Expect = 0.72, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 2/86 (2%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88 LL P ++ILDA GG S ++ ++A+D D + Q+ + + L Sbjct: 235 LLAPQVNELILDACAAPGGKSCHLLELEPSIKLVAVDFDAKRLERVQQNLDRLSLKAELI 294 Query: 89 QATFSQLQDYVPDKGVDGVVFDLGVS 114 + + + D ++ D S Sbjct: 295 HGDAANIGSWWQGGLFDRILLDAPCS 320 >gi|146329596|ref|YP_001209088.1| rRNA SAM-dependent methyltransferase, Fmu [Dichelobacter nodosus VCS1703A] gi|146233066|gb|ABQ14044.1| rRNA SAM-dependent methyltransferase, Fmu [Dichelobacter nodosus VCS1703A] Length = 418 Score = 39.4 bits (91), Expect = 0.72, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 33/87 (37%), Gaps = 2/87 (2%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQFSLF 88 LL P G+ ILDA GG + ++ +IALD + QE ++ Sbjct: 225 LLQPRAGERILDACAAPGGKTGHLLELAPQCTLIALDHAADRLERVQENLKRLHLNAHCQ 284 Query: 89 QATFSQLQDYVPDKGVDGVVFDLGVSS 115 A + L + D ++ D S Sbjct: 285 TADAADLASWYDGHAFDAILLDAPCSG 311 >gi|119855126|ref|YP_935731.1| methyltransferase type 11 [Mycobacterium sp. KMS] gi|119697844|gb|ABL94916.1| Methyltransferase type 11 [Mycobacterium sp. KMS] Length = 208 Score = 39.4 bits (91), Expect = 0.72, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 7/75 (9%) Query: 45 FGAG-GY-SRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYV- 99 G G GY S+ + + + A+D DP + + + Y ++ L + + L+ + Sbjct: 42 LGCGSGYGSQLVLQRFRAARIDAVDLDPAMIERARAQLAPYGDRVHLATGSATDLRAALN 101 Query: 100 -PDKGVDGVVFDLGV 113 D D V FD G+ Sbjct: 102 ADDGSYDAV-FDFGI 115 >gi|289209431|ref|YP_003461497.1| sun protein [Thioalkalivibrio sp. K90mix] gi|288945062|gb|ADC72761.1| sun protein [Thioalkalivibrio sp. K90mix] Length = 451 Score = 39.4 bits (91), Expect = 0.73, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 3/87 (3%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDYKEQFSL 87 LL+P PG+ +LDA GG + + + ALD D + +E + L Sbjct: 254 LLDPQPGERVLDACAAPGGKTGHLLERAGGDLQLTALDSDAERLVQVRENLDRLGFAAQL 313 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGVS 114 A + + + D ++ D+ S Sbjct: 314 TAADVADPDAWWDGRPFDAILLDVPCS 340 >gi|223041828|ref|ZP_03612018.1| Trk system potassium uptake protein TrkA [Actinobacillus minor 202] gi|223017397|gb|EEF15818.1| Trk system potassium uptake protein TrkA [Actinobacillus minor 202] Length = 432 Score = 39.4 bits (91), Expect = 0.73, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 3/88 (3%) Query: 30 ALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSL 87 LL+ G++ILDA GG + + VIALD + ++ +E + +Q ++ Sbjct: 240 ELLDAQNGELILDACAAPGGKTTHILEKAPQAKVIALDIEEARLARVKENLARLNQQATV 299 Query: 88 FQATFSQLQDYVPD-KGVDGVVFDLGVS 114 SQ + ++ + D ++ D S Sbjct: 300 ICGDASQPEQWLDNGVMFDRILLDAPCS 327 >gi|319424439|gb|ADV52513.1| sun protein [Shewanella putrefaciens 200] Length = 429 Score = 39.4 bits (91), Expect = 0.73, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 36/86 (41%), Gaps = 2/86 (2%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88 LL P ++ILDA GG S ++ N++A+D D + Q+ + + L Sbjct: 235 LLAPQVNELILDACAAPGGKSCHLLELEPSINLVAVDFDAKRLERVQQNLDRLSLKAELI 294 Query: 89 QATFSQLQDYVPDKGVDGVVFDLGVS 114 + + + + D ++ D S Sbjct: 295 HSDAANIGSWWQGGLFDRILLDAPCS 320 >gi|118595122|ref|ZP_01552469.1| 23S rRNA (uracil-5-)-methyltransferase [Methylophilales bacterium HTCC2181] gi|118440900|gb|EAV47527.1| 23S rRNA (uracil-5-)-methyltransferase [Methylophilales bacterium HTCC2181] Length = 441 Score = 39.4 bits (91), Expect = 0.73, Method: Composition-based stats. Identities = 37/164 (22%), Positives = 61/164 (37%), Gaps = 30/164 (18%) Query: 23 VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQ------- 75 VL+ +V+ LNP P +VI D G G ++ GSNV+ + D V Sbjct: 277 VLIRRVMNFLNPKPTEVIFDFFCGLGNFTLPIASYGSNVVGFESDEALVESANINAEKNK 336 Query: 76 -ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134 + + ++K + LF+ D + LG +S + R G L+ Sbjct: 337 LQKLAEFK-RVDLFKVD-------------DQAITSLGRASKWLIDPPR------DGALN 376 Query: 135 MRMSCSGISASDVV--NQANVKDLTRILGILGEEKQASRIAHAI 176 + S S + +++ N L R +L EK I Sbjct: 377 LINSISEENKPNLICYVSCNPATLARDAHVLTNEKGYKFAKAGI 420 >gi|86749595|ref|YP_486091.1| dimethyladenosine transferase [Rhodopseudomonas palustris HaA2] gi|119365054|sp|Q2IX80|RSMA_RHOP2 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|86572623|gb|ABD07180.1| dimethyladenosine transferase [Rhodopseudomonas palustris HaA2] Length = 287 Score = 39.4 bits (91), Expect = 0.74, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 6/61 (9%) Query: 42 DATF-----GAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95 D T G GG +R+ G+ VIA++RD A+ +E Y + + A + Sbjct: 48 DVTVVEIGPGPGGLTRALLATGARRVIAIERDERALGALEEIAAHYPGRLEIVCADAMEF 107 Query: 96 Q 96 Sbjct: 108 D 108 >gi|238783195|ref|ZP_04627221.1| Ribosomal RNA small subunit methyltransferase B [Yersinia bercovieri ATCC 43970] gi|238715991|gb|EEQ07977.1| Ribosomal RNA small subunit methyltransferase B [Yersinia bercovieri ATCC 43970] Length = 431 Score = 39.4 bits (91), Expect = 0.74, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 38/89 (42%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85 + LL+P G+ ILD GG + + +V+A+D D +S +E ++ + Sbjct: 238 CVELLDPQNGEQILDLCAAPGGKTTHILEAAPKAHVLAVDIDEQRLSRVKENLQRLQLHA 297 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + + + D+ D ++ D S Sbjct: 298 VVRVGDGRTPEAWCGDQQFDRILLDAPCS 326 >gi|144900150|emb|CAM77014.1| SAM-dependent methyltransferases [Magnetospirillum gryphiswaldense MSR-1] Length = 176 Score = 39.4 bits (91), Expect = 0.75, Method: Composition-based stats. Identities = 15/42 (35%), Positives = 18/42 (42%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQ 75 APG +LD G G ++R G V ALDRD Sbjct: 21 IAPGGAVLDLASGGGRHARLLLDRGHAVTALDRDITQAHLAH 62 >gi|320040035|gb|EFW21969.1| RNA methylase [Coccidioides posadasii str. Silveira] Length = 240 Score = 39.4 bits (91), Expect = 0.75, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 7/83 (8%) Query: 33 NPAPGKVILDATF-GAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYK--EQFSL 87 P +++D TF G GG + +F + V A+++DP ++ C + + Y ++ + Sbjct: 70 APQKKSIVID-TFAGVGGNAIAFARSNKWRRVYAIEKDPASLQCAKHNAKIYGVEDKITW 128 Query: 88 FQA-TFSQLQDYVPDKGVDGVVF 109 FQ F L+ + D V+F Sbjct: 129 FQGDCFEILKTQLKDLAPYSVIF 151 >gi|288933811|ref|YP_003437870.1| RNA methyltransferase, TrmA family [Klebsiella variicola At-22] gi|288888540|gb|ADC56858.1| RNA methyltransferase, TrmA family [Klebsiella variicola At-22] Length = 434 Score = 39.4 bits (91), Expect = 0.75, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 32/90 (35%), Gaps = 3/90 (3%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82 ++ + L+ P +LD G G ++ + V+ ++ P V G+E Sbjct: 274 MVRTALEWLDLQPEDRVLDLFCGMGNFTLPLATRAAQVVGVEGVPALVEKGRENAALNGL 333 Query: 83 EQFSLFQATFSQ--LQDYVPDKGVDGVVFD 110 + F + + G D V+ D Sbjct: 334 SNVTFFHENLEEDVTRQAWAKHGFDKVLLD 363 >gi|303312089|ref|XP_003066056.1| trimethylguanosine synthase, putative [Coccidioides posadasii C735 delta SOWgp] gi|240105718|gb|EER23911.1| trimethylguanosine synthase, putative [Coccidioides posadasii C735 delta SOWgp] Length = 240 Score = 39.4 bits (91), Expect = 0.75, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 7/83 (8%) Query: 33 NPAPGKVILDATF-GAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYK--EQFSL 87 P +++D TF G GG + +F + V A+++DP ++ C + + Y ++ + Sbjct: 70 APQKKSIVID-TFAGVGGNAIAFARSNKWRRVYAIEKDPASLQCAKHNAKIYGVEDKITW 128 Query: 88 FQA-TFSQLQDYVPDKGVDGVVF 109 FQ F L+ + D V+F Sbjct: 129 FQGDCFEILKTQLKDLAPYSVIF 151 >gi|326437554|gb|EGD83124.1| Tgs1 protein [Salpingoeca sp. ATCC 50818] Length = 821 Score = 39.4 bits (91), Expect = 0.76, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 3/75 (4%) Query: 38 KVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQ- 94 KV++D G GG + F + VIA+D DP ++ + R Y ++ F + Sbjct: 633 KVLVDGFCGVGGSAIQFARTCDRVIAIDIDPNKINYCRHNARIYGVEDKIEFITGDFFEV 692 Query: 95 LQDYVPDKGVDGVVF 109 L +D V Sbjct: 693 LPRLRARMEIDVVFL 707 >gi|296226495|ref|XP_002758952.1| PREDICTED: trimethylguanosine synthase [Callithrix jacchus] Length = 867 Score = 39.4 bits (91), Expect = 0.76, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 2/68 (2%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96 V++DA G GG + F G VIA+D DP ++ + Y ++ F L Sbjct: 695 VVVDAFCGVGGNTIQFALTGMRVIAVDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA 754 Query: 97 DYVPDKGV 104 + V Sbjct: 755 PCLKADVV 762 >gi|168187189|ref|ZP_02621824.1| possible rRNA methylase [Clostridium botulinum C str. Eklund] gi|169294843|gb|EDS76976.1| possible rRNA methylase [Clostridium botulinum C str. Eklund] Length = 189 Score = 39.4 bits (91), Expect = 0.76, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 41/101 (40%), Gaps = 9/101 (8%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRD 80 L ++ IA+ G + +DAT G G + ++ V + D A+ ++ + D Sbjct: 12 LAKE-IAIKKLQEGDIAVDATMGNGNDTVFLARLVGESGKVYSFDVQSTAIENTKKRIID 70 Query: 81 --YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV--SSMQ 117 + L + Y+ + + V+F+LG SS Sbjct: 71 NKINTKIELIHDGHENIDKYINE-KLKLVMFNLGYLPSSEH 110 >gi|328865307|gb|EGG13693.1| Putative PRIP-interacting protein [Dictyostelium fasciculatum] Length = 326 Score = 39.4 bits (91), Expect = 0.77, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 3/73 (4%) Query: 40 ILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQD 97 I+D GAGG S F + +V+A+D DP V Y+ E+ F + Sbjct: 156 IIDGFGGAGGNSIQFARTCGHVLAVDLDPTKVQLAINNANVYRCVEKIDFINGNFMDVAR 215 Query: 98 YVP-DKGVDGVVF 109 + VD + Sbjct: 216 SIQGITHVDVIFL 228 >gi|83642941|ref|YP_431376.1| sun protein [Hahella chejuensis KCTC 2396] gi|83630984|gb|ABC26951.1| sun protein [Hahella chejuensis KCTC 2396] Length = 447 Score = 39.4 bits (91), Expect = 0.77, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 2/86 (2%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88 L++P P + +LDA GG + + + +V A+D DP ++T++ + + + Sbjct: 245 LVDPQPNERVLDACCAPGGKTAALLERTPTISVTAVDVDPERQLRTRDTLQRLQLEADVR 304 Query: 89 QATFSQLQDYVPDKGVDGVVFDLGVS 114 A LQ + D ++ D S Sbjct: 305 TADIGDLQQWWDGTPFDRILLDAPCS 330 >gi|323180215|gb|EFZ65767.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Escherichia coli 1180] Length = 160 Score = 39.4 bits (91), Expect = 0.79, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 37/90 (41%), Gaps = 3/90 (3%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82 ++ + + L+ P +LD G G ++ K ++V+ ++ P V GQ+ R Sbjct: 1 MVARALEWLDVQPEDRVLDLFCGMGNFTLPLAKQAASVVGVEGVPALVEKGQQNARLNGL 60 Query: 83 EQFSLFQATFSQ--LQDYVPDKGVDGVVFD 110 + + + + + G D V+ D Sbjct: 61 QNVTFYHENLEEDVTKQPWAKNGFDKVLLD 90 >gi|193215241|ref|YP_001996440.1| Fmu (Sun) domain-containing protein [Chloroherpeton thalassium ATCC 35110] gi|193088718|gb|ACF13993.1| Fmu (Sun) domain protein [Chloroherpeton thalassium ATCC 35110] Length = 448 Score = 39.4 bits (91), Expect = 0.79, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 5/85 (5%) Query: 31 LLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSL 87 LL+P P +LDA G GG + + K + A D +P ++ ++ +Q Sbjct: 239 LLDPKPKDTVLDACAGGGGKTLHLAALMKNKGAIFAYDVNPKRFGNIRQRIKRSGQQNIR 298 Query: 88 FQATFSQLQDYVPDK--GVDGVVFD 110 + +L + D +D ++ D Sbjct: 299 LLDSPEKLAQFKNDWHEKIDCLLID 323 >gi|77408629|ref|ZP_00785363.1| conserved hypothetical protein [Streptococcus agalactiae COH1] gi|77172747|gb|EAO75882.1| conserved hypothetical protein [Streptococcus agalactiae COH1] Length = 188 Score = 39.4 bits (91), Expect = 0.79, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 33/90 (36%), Gaps = 7/90 (7%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-E 83 L +VI + LDAT G G + K V A D A++ + + + Sbjct: 13 LAEVID-----KEAITLDATMGNGNDTVFLAKSSKKVYAFDIQEEAIAKTKAKLTEQGIS 67 Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 L L+ YV + +F+LG Sbjct: 68 NAELILDGHENLEQYVHTP-LRAAIFNLGY 96 >gi|22537547|ref|NP_688398.1| hypothetical protein SAG1400 [Streptococcus agalactiae 2603V/R] gi|25011512|ref|NP_735907.1| hypothetical protein gbs1470 [Streptococcus agalactiae NEM316] gi|76787418|ref|YP_330041.1| hypothetical protein SAK_1433 [Streptococcus agalactiae A909] gi|76797669|ref|ZP_00779938.1| methyltransferase [Streptococcus agalactiae 18RS21] gi|77411510|ref|ZP_00787854.1| conserved hypothetical protein [Streptococcus agalactiae CJB111] gi|22534429|gb|AAN00271.1|AE014256_3 conserved hypothetical protein [Streptococcus agalactiae 2603V/R] gi|24413051|emb|CAD47129.1| Unknown [Streptococcus agalactiae NEM316] gi|76562475|gb|ABA45059.1| conserved hypothetical protein [Streptococcus agalactiae A909] gi|76586963|gb|EAO63452.1| methyltransferase [Streptococcus agalactiae 18RS21] gi|77162436|gb|EAO73403.1| conserved hypothetical protein [Streptococcus agalactiae CJB111] gi|319745348|gb|EFV97662.1| rRNA methylase [Streptococcus agalactiae ATCC 13813] Length = 188 Score = 39.4 bits (91), Expect = 0.79, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 33/90 (36%), Gaps = 7/90 (7%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-E 83 L +VI + LDAT G G + K V A D A++ + + + Sbjct: 13 LAEVID-----KEAITLDATMGNGNDTVFLAKSSKKVYAFDIQEEAIAKTKAKLTEQGIS 67 Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 L L+ YV + +F+LG Sbjct: 68 NAELILDGHENLEQYVHTP-LRAAIFNLGY 96 >gi|325676133|ref|ZP_08155814.1| type 12 methyltransferase [Rhodococcus equi ATCC 33707] gi|325553043|gb|EGD22724.1| type 12 methyltransferase [Rhodococcus equi ATCC 33707] Length = 201 Score = 39.4 bits (91), Expect = 0.80, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 36/102 (35%), Gaps = 7/102 (6%) Query: 25 LEKVIALLNPAPGK---VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81 L +++ + PG+ LD G G +S K G +V A+D P A+ + + Sbjct: 28 LNRLLDAVAV-PGEAAARALDLGCGTGDHSIELAKRGWSVTAVDSVPLAIERARAKLPVA 86 Query: 82 KEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDR 123 + L YV D D+G + R Sbjct: 87 GADVRFVLGDVTHLPAYVDDHYT--FALDVGC-FHGLTDEGR 125 >gi|159795650|pdb|2YXD|A Chain A, Crystal Structure Of Cobalamin Biosynthesis Precorrin 8w Decarboxylase (Cbit) gi|159795651|pdb|2YXD|B Chain B, Crystal Structure Of Cobalamin Biosynthesis Precorrin 8w Decarboxylase (Cbit) Length = 183 Score = 39.4 bits (91), Expect = 0.81, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 35/85 (41%), Gaps = 5/85 (5%) Query: 21 VPVLLEKV----IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQE 76 VP+ E++ I LN V++D G+GG + K V A+D A+ ++ Sbjct: 16 VPITKEEIRAVSIGKLNLNKDDVVVDVGCGSGGXTVEIAKRCKFVYAIDYLDGAIEVTKQ 75 Query: 77 TMRDYK-EQFSLFQATFSQLQDYVP 100 + + + + + + D + Sbjct: 76 NLAKFNIKNCQIIKGRAEDVLDKLE 100 >gi|57867203|ref|YP_188893.1| hypothetical protein SERP1321 [Staphylococcus epidermidis RP62A] gi|293366298|ref|ZP_06612978.1| rRNA methyltransferase [Staphylococcus epidermidis M23864:W2(grey)] gi|57637861|gb|AAW54649.1| conserved hypothetical protein [Staphylococcus epidermidis RP62A] gi|291319536|gb|EFE59902.1| rRNA methyltransferase [Staphylococcus epidermidis M23864:W2(grey)] gi|329737492|gb|EGG73745.1| putative rRNA methylase [Staphylococcus epidermidis VCU045] Length = 187 Score = 39.4 bits (91), Expect = 0.81, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 6/85 (7%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91 +++DAT G G + F + N V D A+ + +DY L Q+ Sbjct: 18 INHNSIVIDATSGNGNDTAYFAQHVPNGLVYGFDIQEQAILNTHKKTKDY-SNVKLIQSG 76 Query: 92 FSQLQDYVPDKG---VDGVVFDLGV 113 + ++P + +D +F+LG Sbjct: 77 HENAKLHIPAQHHGCIDAAIFNLGY 101 >gi|307543963|ref|YP_003896442.1| Sun protein [Halomonas elongata DSM 2581] gi|307215987|emb|CBV41257.1| K03500 Sun protein [Halomonas elongata DSM 2581] Length = 447 Score = 39.4 bits (91), Expect = 0.81, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 36/100 (36%), Gaps = 17/100 (17%) Query: 23 VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82 VLL VI P PG +LDA GG + ++ D D A+ + + Sbjct: 249 VLLGPVI---APRPGARVLDACCAPGGKAAHLLEL------FDIDLQAIDSDDARLARVE 299 Query: 83 EQF-------SLFQATFSQLQDYVPDKGVDGVVFDLGVSS 115 + SL ++ +D+ D ++ D S Sbjct: 300 DTLARLGLSASLAHGDATE-RDWWDGTAFDAILLDAPCSG 338 >gi|156975785|ref|YP_001446692.1| 23S rRNA 5-methyluridine methyltransferase [Vibrio harveyi ATCC BAA-1116] gi|226725399|sp|A7MTS9|RUMA_VIBHB RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|156527379|gb|ABU72465.1| hypothetical protein VIBHAR_03529 [Vibrio harveyi ATCC BAA-1116] Length = 439 Score = 39.4 bits (91), Expect = 0.81, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 3/90 (3%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR-DYK 82 ++ + + L+P + +LD G G +S K +V+ ++ V + Sbjct: 281 MVAQAVDWLDPKSDERVLDLFCGLGNFSLPIAKRAKHVVGVEGVAEMVEKAVNNASLNQI 340 Query: 83 EQFSLFQATFSQLQD--YVPDKGVDGVVFD 110 + A Q + + D V+ D Sbjct: 341 NNARFYHANLEQDFEGQVWAAEQFDKVLLD 370 >gi|149010726|ref|ZP_01832097.1| rRNA methylase, putative [Streptococcus pneumoniae SP19-BS75] gi|147765207|gb|EDK72136.1| rRNA methylase, putative [Streptococcus pneumoniae SP19-BS75] Length = 185 Score = 39.4 bits (91), Expect = 0.82, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 10/91 (10%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82 L +V+ V++DAT G G+ + K+ V A D A+ QE + Sbjct: 12 LAEVV----TKED-VVVDATMGN-GHDTLFLAKLAKQVYAFDIQKQALEKTQERLHQAGL 65 Query: 83 EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 L L +V G+ F+LG Sbjct: 66 TNAQLILQGHETLDQFVTKAKA-GI-FNLGY 94 >gi|125974460|ref|YP_001038370.1| methyltransferase type 11 [Clostridium thermocellum ATCC 27405] gi|256005184|ref|ZP_05430152.1| Methyltransferase type 11 [Clostridium thermocellum DSM 2360] gi|281418987|ref|ZP_06250005.1| Methyltransferase type 11 [Clostridium thermocellum JW20] gi|125714685|gb|ABN53177.1| Methyltransferase type 11 [Clostridium thermocellum ATCC 27405] gi|255990838|gb|EEU00952.1| Methyltransferase type 11 [Clostridium thermocellum DSM 2360] gi|281407444|gb|EFB37704.1| Methyltransferase type 11 [Clostridium thermocellum JW20] gi|316941597|gb|ADU75631.1| Methyltransferase type 11 [Clostridium thermocellum DSM 1313] Length = 244 Score = 39.4 bits (91), Expect = 0.83, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 31/73 (42%) Query: 29 IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLF 88 I PG ILD G+GGYS K G V A+D + V ++ + + F Sbjct: 25 IKNCAGKPGGKILDVACGSGGYSVELAKEGYLVTAVDIEEEMVEKVKKKASENGLSINAF 84 Query: 89 QATFSQLQDYVPD 101 + +L+ + + Sbjct: 85 KCDMRELEKKIGE 97 >gi|328717362|ref|XP_003246183.1| PREDICTED: hypothetical protein LOC100573105 [Acyrthosiphon pisum] Length = 592 Score = 39.4 bits (91), Expect = 0.83, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 37/98 (37%), Gaps = 17/98 (17%) Query: 46 GAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKG 103 GAGG + VIA+D D + ++ Y ++ + +L++ Sbjct: 227 GAGGNVIHLARRFDKVIAVDIDADKIIMAKQNAAIYGVGDKIEFIVGDYFKLENQ----- 281 Query: 104 VDGVVFDLGVSSMQIDCGDRGFSFQK---SGPLDMRMS 138 + D+ V+S + + K GPLD+ M Sbjct: 282 ---IKGDVIVTSPPWGGPE----YSKMDVIGPLDLYMD 312 >gi|296164985|ref|ZP_06847540.1| type 11 methyltransferase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295899633|gb|EFG79084.1| type 11 methyltransferase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 252 Score = 39.4 bits (91), Expect = 0.84, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 24/54 (44%) Query: 30 ALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83 L P ++D GAG ++ + G++V+A DRD + +R + Sbjct: 7 DRLGIGPATKVIDVGCGAGRHAFEAYRRGADVVAFDRDADELRAVDTILRAMAD 60 >gi|281207717|gb|EFA81897.1| Putative PRIP-interacting protein [Polysphondylium pallidum PN500] Length = 356 Score = 39.4 bits (91), Expect = 0.84, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 3/73 (4%) Query: 40 ILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQD 97 ILDA GAGG + F K +V+++D D + + Y+ ++ L + F + Sbjct: 192 ILDAFCGAGGNTIQFAKQCDHVLSVDIDKKKLMMASHNAKIYQCLDRIDLVHSDFMYFAN 251 Query: 98 YVP-DKGVDGVVF 109 + + VD V Sbjct: 252 SIQGIQHVDAVFL 264 >gi|319785852|ref|YP_004145327.1| sun protein [Pseudoxanthomonas suwonensis 11-1] gi|317464364|gb|ADV26096.1| sun protein [Pseudoxanthomonas suwonensis 11-1] Length = 451 Score = 39.4 bits (91), Expect = 0.85, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 38/94 (40%), Gaps = 5/94 (5%) Query: 26 EKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRD--- 80 ++ L P PG +LDA GG + + ++ALD DP ++ ++T+R Sbjct: 250 QQAADALAPEPGARVLDACAAPGGKAAHLIERDPTLELLALDVDPRRLARVEDTLRRGGL 309 Query: 81 YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 E+ L + + D ++ D S Sbjct: 310 LGERVQLRPVDATAPALWWDGFTFDAILLDAPCS 343 >gi|115378941|ref|ZP_01466075.1| methyltransferase [Stigmatella aurantiaca DW4/3-1] gi|310821512|ref|YP_003953870.1| methyltransferase type 11 domain-containing protein [Stigmatella aurantiaca DW4/3-1] gi|115364058|gb|EAU63159.1| methyltransferase [Stigmatella aurantiaca DW4/3-1] gi|309394584|gb|ADO72043.1| Methyltransferase type 11 domain protein [Stigmatella aurantiaca DW4/3-1] Length = 247 Score = 39.4 bits (91), Expect = 0.86, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 28/72 (38%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84 +E+ + LL PG +LD G G ++ G V LD ++ ++ + Sbjct: 29 VEQCLRLLALPPGSKVLDLCCGQGRHAVELALRGYQVTGLDISSERLALARQRATQAQVN 88 Query: 85 FSLFQATFSQLQ 96 QA Q+ Sbjct: 89 VEWVQADMRQMP 100 >gi|72162072|ref|YP_289729.1| s-adenosylmethionine (SAM)-dependent methyltransferase [Thermobifida fusca YX] gi|71915804|gb|AAZ55706.1| s-adenosylmethionine (SAM)-dependent methyltransferase [Thermobifida fusca YX] Length = 251 Score = 39.4 bits (91), Expect = 0.86, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 4/68 (5%) Query: 11 SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFA 70 A H + H LL LLN APG+ +LDA G G + G +V+ +D P Sbjct: 12 DARHSFVAAHGTALL----DLLNAAPGERVLDAGCGTGDHVAQLAAAGVDVLGVDISPEM 67 Query: 71 VSCGQETM 78 V+ Sbjct: 68 VARAAARF 75 >gi|327535927|gb|AEA94761.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus faecalis OG1RF] Length = 456 Score = 39.4 bits (91), Expect = 0.86, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 32/98 (32%), Gaps = 17/98 (17%) Query: 23 VLLEKVIALLNPAPGKVILD-----ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77 VL + I L+ P + ++D T G S K V +D P A+ + Sbjct: 297 VLYNEGIKALDLQPNETVVDAYCGVGTIG-----LSLAKQAHQVRGMDTIPAAIDDARFN 351 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFD 110 + + +D +P D +V D Sbjct: 352 AKRLG--VTNTHYAVGTAEDLLPKWFKEGFKPDAIVVD 387 >gi|319946473|ref|ZP_08020710.1| rRNA methylase [Streptococcus australis ATCC 700641] gi|319747441|gb|EFV99697.1| rRNA methylase [Streptococcus australis ATCC 700641] Length = 185 Score = 39.4 bits (91), Expect = 0.86, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 10/91 (10%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82 L +V ++DAT G G+ + K+ V A D A+ Q+ + + Sbjct: 12 LREV-----ITDQDTVVDATMGN-GHDTLFLAKLAKEVYAFDIQEQALVHTQKRLEEAGL 65 Query: 83 EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 L + YV V +F+LG Sbjct: 66 SNARLLLKGHEEADHYVNQ--VKAAIFNLGY 94 >gi|315174955|gb|EFU18972.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX1346] Length = 456 Score = 39.4 bits (91), Expect = 0.86, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 32/98 (32%), Gaps = 17/98 (17%) Query: 23 VLLEKVIALLNPAPGKVILD-----ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77 VL + I L+ P + ++D T G S K V +D P A+ + Sbjct: 297 VLYNEGIKALDLQPNETVVDAYCGVGTIG-----LSLAKQAHQVRGMDTIPAAIDDARFN 351 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFD 110 + + +D +P D +V D Sbjct: 352 AKRLG--VTNTHYAVGTAEDLLPKWFKEGFKPDAIVVD 387 >gi|315162126|gb|EFU06143.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0645] gi|315168692|gb|EFU12709.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX1341] Length = 456 Score = 39.4 bits (91), Expect = 0.86, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 32/98 (32%), Gaps = 17/98 (17%) Query: 23 VLLEKVIALLNPAPGKVILD-----ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77 VL + I L+ P + ++D T G S K V +D P A+ + Sbjct: 297 VLYNEGIKALDLQPNETVVDAYCGVGTIG-----LSLAKQAHQVRGMDTIPAAIDDARFN 351 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFD 110 + + +D +P D +V D Sbjct: 352 AKRLG--VTNTHYAVGTAEDLLPKWFKEGFKPDAIVVD 387 >gi|312900072|ref|ZP_07759389.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0470] gi|311292829|gb|EFQ71385.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0470] Length = 456 Score = 39.4 bits (91), Expect = 0.86, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 32/98 (32%), Gaps = 17/98 (17%) Query: 23 VLLEKVIALLNPAPGKVILD-----ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77 VL + I L+ P + ++D T G S K V +D P A+ + Sbjct: 297 VLYNEGIKALDLQPNETVVDAYCGVGTIG-----LSLAKQAHQVRGMDTIPAAIDDARFN 351 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFD 110 + + +D +P D +V D Sbjct: 352 AKRLG--VTNTHYAVGTAEDLLPKWFKEGFKPDAIVVD 387 >gi|307276947|ref|ZP_07558057.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX2134] gi|306506370|gb|EFM75530.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX2134] Length = 456 Score = 39.4 bits (91), Expect = 0.86, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 32/98 (32%), Gaps = 17/98 (17%) Query: 23 VLLEKVIALLNPAPGKVILD-----ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77 VL + I L+ P + ++D T G S K V +D P A+ + Sbjct: 297 VLYNEGIKALDLQPNETVVDAYCGVGTIG-----LSLAKQAHQVRGMDTIPAAIDDARFN 351 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFD 110 + + +D +P D +V D Sbjct: 352 AKRLG--VTNTHYAVGTAEDLLPKWFKEGFKPDAIVVD 387 >gi|257416880|ref|ZP_05593874.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis AR01/DG] gi|257158708|gb|EEU88668.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis ARO1/DG] Length = 456 Score = 39.4 bits (91), Expect = 0.86, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 32/98 (32%), Gaps = 17/98 (17%) Query: 23 VLLEKVIALLNPAPGKVILD-----ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77 VL + I L+ P + ++D T G S K V +D P A+ + Sbjct: 297 VLYNEGIKALDLQPNETVVDAYCGVGTIG-----LSLAKQAHQVRGMDTIPAAIDDARFN 351 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFD 110 + + +D +P D +V D Sbjct: 352 AKRLG--VTNTHYAVGTAEDLLPKWFKEGFKPDAIVVD 387 >gi|257087679|ref|ZP_05582040.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis D6] gi|256995709|gb|EEU83011.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis D6] gi|315025522|gb|EFT37454.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX2137] Length = 456 Score = 39.4 bits (91), Expect = 0.86, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 32/98 (32%), Gaps = 17/98 (17%) Query: 23 VLLEKVIALLNPAPGKVILD-----ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77 VL + I L+ P + ++D T G S K V +D P A+ + Sbjct: 297 VLYNEGIKALDLQPNETVVDAYCGVGTIG-----LSLAKQAHQVRGMDTIPAAIDDARFN 351 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFD 110 + + +D +P D +V D Sbjct: 352 AKRLG--VTNTHYAVGTAEDLLPKWFKEGFKPDAIVVD 387 >gi|256763335|ref|ZP_05503915.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis T3] gi|256963815|ref|ZP_05567986.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis HIP11704] gi|307271762|ref|ZP_07553033.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0855] gi|256684586|gb|EEU24281.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis T3] gi|256954311|gb|EEU70943.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis HIP11704] gi|306511640|gb|EFM80639.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0855] Length = 456 Score = 39.4 bits (91), Expect = 0.86, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 32/98 (32%), Gaps = 17/98 (17%) Query: 23 VLLEKVIALLNPAPGKVILD-----ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77 VL + I L+ P + ++D T G S K V +D P A+ + Sbjct: 297 VLYNEGIKALDLQPNETVVDAYCGVGTIG-----LSLAKQAHQVRGMDTIPAAIDDARFN 351 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFD 110 + + +D +P D +V D Sbjct: 352 AKRLG--VTNTHYAVGTAEDLLPKWFKEGFKPDAIVVD 387 >gi|255974885|ref|ZP_05425471.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis T2] gi|256616789|ref|ZP_05473635.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis ATCC 4200] gi|256854009|ref|ZP_05559374.1| RNA methyltransferase [Enterococcus faecalis T8] gi|256961043|ref|ZP_05565214.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis Merz96] gi|257081727|ref|ZP_05576088.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis E1Sol] gi|293384567|ref|ZP_06630433.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis R712] gi|293386796|ref|ZP_06631367.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis S613] gi|307278742|ref|ZP_07559809.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0860] gi|307290285|ref|ZP_07570201.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0411] gi|312906393|ref|ZP_07765401.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis DAPTO 512] gi|312979448|ref|ZP_07791136.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis DAPTO 516] gi|255967757|gb|EET98379.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis T2] gi|256596316|gb|EEU15492.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis ATCC 4200] gi|256710952|gb|EEU25995.1| RNA methyltransferase [Enterococcus faecalis T8] gi|256951539|gb|EEU68171.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis Merz96] gi|256989757|gb|EEU77059.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis E1Sol] gi|291078113|gb|EFE15477.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis R712] gi|291083799|gb|EFE20762.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis S613] gi|306498706|gb|EFM68207.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0411] gi|306504603|gb|EFM73806.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0860] gi|310627547|gb|EFQ10830.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis DAPTO 512] gi|311287819|gb|EFQ66375.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis DAPTO 516] gi|315030469|gb|EFT42401.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX4000] gi|315032560|gb|EFT44492.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0017] gi|315170491|gb|EFU14508.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX1342] Length = 456 Score = 39.4 bits (91), Expect = 0.86, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 32/98 (32%), Gaps = 17/98 (17%) Query: 23 VLLEKVIALLNPAPGKVILD-----ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77 VL + I L+ P + ++D T G S K V +D P A+ + Sbjct: 297 VLYNEGIKALDLQPNETVVDAYCGVGTIG-----LSLAKQAHQVRGMDTIPAAIDDARFN 351 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFD 110 + + +D +P D +V D Sbjct: 352 AKRLG--VTNTHYAVGTAEDLLPKWFKEGFKPDAIVVD 387 >gi|229549174|ref|ZP_04437899.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis ATCC 29200] gi|255971891|ref|ZP_05422477.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis T1] gi|256957937|ref|ZP_05562108.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis DS5] gi|257079874|ref|ZP_05574235.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis JH1] gi|257421676|ref|ZP_05598666.1| RNA methyltransferase [Enterococcus faecalis X98] gi|294780400|ref|ZP_06745766.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis PC1.1] gi|300860697|ref|ZP_07106784.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TUSoD Ef11] gi|307269643|ref|ZP_07550978.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX4248] gi|312953733|ref|ZP_07772567.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0102] gi|229305411|gb|EEN71407.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis ATCC 29200] gi|255962909|gb|EET95385.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis T1] gi|256948433|gb|EEU65065.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis DS5] gi|256987904|gb|EEU75206.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis JH1] gi|257163500|gb|EEU93460.1| RNA methyltransferase [Enterococcus faecalis X98] gi|294452500|gb|EFG20936.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis PC1.1] gi|300849736|gb|EFK77486.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TUSoD Ef11] gi|306514033|gb|EFM82620.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX4248] gi|310628360|gb|EFQ11643.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0102] gi|315035082|gb|EFT47014.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0027] gi|315148672|gb|EFT92688.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX4244] gi|315151812|gb|EFT95828.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0031] gi|315155574|gb|EFT99590.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0043] gi|315159336|gb|EFU03353.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0312] gi|323481633|gb|ADX81072.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis 62] gi|329570604|gb|EGG52323.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX1467] Length = 456 Score = 39.4 bits (91), Expect = 0.86, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 32/98 (32%), Gaps = 17/98 (17%) Query: 23 VLLEKVIALLNPAPGKVILD-----ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77 VL + I L+ P + ++D T G S K V +D P A+ + Sbjct: 297 VLYNEGIKALDLQPNETVVDAYCGVGTIG-----LSLAKQAHQVRGMDTIPAAIDDARFN 351 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFD 110 + + +D +P D +V D Sbjct: 352 AKRLG--VTNTHYAVGTAEDLLPKWFKEGFKPDAIVVD 387 >gi|29377186|ref|NP_816340.1| RNA methyltransferase [Enterococcus faecalis V583] gi|227554196|ref|ZP_03984243.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis HH22] gi|257090896|ref|ZP_05585257.1| tRNA (uracil-5-)-methyltransferase trmA [Enterococcus faecalis CH188] gi|257420102|ref|ZP_05597096.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis T11] gi|312902534|ref|ZP_07761740.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0635] gi|50401756|sp|Q830R6|Y2706_ENTFA RecName: Full=Uncharacterized RNA methyltransferase EF_2706 gi|29344652|gb|AAO82410.1| RNA methyltransferase, TrmA family [Enterococcus faecalis V583] gi|227176695|gb|EEI57667.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis HH22] gi|256999708|gb|EEU86228.1| tRNA (uracil-5-)-methyltransferase trmA [Enterococcus faecalis CH188] gi|257161930|gb|EEU91890.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis T11] gi|310634204|gb|EFQ17487.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0635] gi|315573827|gb|EFU86018.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0309B] gi|315580263|gb|EFU92454.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0309A] Length = 456 Score = 39.4 bits (91), Expect = 0.86, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 32/98 (32%), Gaps = 17/98 (17%) Query: 23 VLLEKVIALLNPAPGKVILD-----ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77 VL + I L+ P + ++D T G S K V +D P A+ + Sbjct: 297 VLYNEGIKALDLQPNETVVDAYCGVGTIG-----LSLAKQAHQVRGMDTIPAAIDDARFN 351 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFD 110 + + +D +P D +V D Sbjct: 352 AKRLG--VTNTHYAVGTAEDLLPKWFKEGFKPDAIVVD 387 >gi|291301756|ref|YP_003513034.1| methyltransferase type 11 [Stackebrandtia nassauensis DSM 44728] gi|290570976|gb|ADD43941.1| Methyltransferase type 11 [Stackebrandtia nassauensis DSM 44728] Length = 305 Score = 39.4 bits (91), Expect = 0.87, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 9/87 (10%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84 + +++ L P V LDA G G ++ G VI +D ++ +E + + Sbjct: 85 MRELLDALEP---GVALDAACGTGRHAAYLAGRGHQVIGVDSSAEMLAVAREKL----PE 137 Query: 85 FSLFQATFSQLQDYVPDKGVDGVVFDL 111 QA L VPD VD +V L Sbjct: 138 VEFHQAGLDALP--VPDSHVDVIVCAL 162 >gi|238754203|ref|ZP_04615561.1| Ribosomal RNA small subunit methyltransferase B [Yersinia ruckeri ATCC 29473] gi|238707699|gb|EEQ00059.1| Ribosomal RNA small subunit methyltransferase B [Yersinia ruckeri ATCC 29473] Length = 429 Score = 39.4 bits (91), Expect = 0.88, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 38/89 (42%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85 + LL+P G+ ILD GG + + +V+A+D D +S +E ++ + Sbjct: 238 CVDLLDPQNGEQILDLCAAPGGKTTHILEAAPKSHVLAVDIDEQRLSRVKENLQRLQLHA 297 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 ++ + ++ D ++ D S Sbjct: 298 TVTVGDGRAPDKWCGNQLFDRILLDAPCS 326 >gi|284161369|ref|YP_003399992.1| RNA methylase, NOL1/NOP2/sun family [Archaeoglobus profundus DSM 5631] gi|284011366|gb|ADB57319.1| RNA methylase, NOL1/NOP2/sun family [Archaeoglobus profundus DSM 5631] Length = 445 Score = 39.4 bits (91), Expect = 0.89, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 34/84 (40%), Gaps = 4/84 (4%) Query: 31 LLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQFS 86 LL+P P + ++D GG + + + A D D + +E ++ + Sbjct: 249 LLDPKPNETVVDLCAAPGGKTIHMAELMRNRGVIHAFDVDELRLKRMEELIKRCGVKIVK 308 Query: 87 LFQATFSQLQDYVPDKGVDGVVFD 110 +++ + D + + D V+ D Sbjct: 309 IYKMDARKAVDVLGESIADKVMLD 332 >gi|254447150|ref|ZP_05060617.1| 23S rRNA (uracil-5-)-methyltransferase [gamma proteobacterium HTCC5015] gi|198263289|gb|EDY87567.1| 23S rRNA (uracil-5-)-methyltransferase [gamma proteobacterium HTCC5015] Length = 452 Score = 39.4 bits (91), Expect = 0.89, Method: Composition-based stats. Identities = 30/155 (19%), Positives = 53/155 (34%), Gaps = 26/155 (16%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83 ++ + L+ PG +LDA G G +S + G+ V+ L+ V + RD Sbjct: 294 MVRTAVEQLHVPPGAHVLDAFCGVGNFSLALANGGAKVLGLEGSDNMVEKARHNARDNGF 353 Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGIS 143 + F+ D + +DG+ + Sbjct: 354 ELCEFKTMNLMHSDGIGRHTLDGI--------HHA-----------------LLDPPRDG 388 Query: 144 ASDVVNQ-ANVKDLTRILGILGEEKQASRIAHAIV 177 AS++ + A +L R+L I SR A +V Sbjct: 389 ASELCQRLAREPELQRVLYISCNPATFSRDAEHLV 423 >gi|209920234|ref|YP_002294318.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli SE11] gi|209913493|dbj|BAG78567.1| putative RNA methyltransferase [Escherichia coli SE11] Length = 433 Score = 39.4 bits (91), Expect = 0.91, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 37/90 (41%), Gaps = 3/90 (3%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82 ++ + + L+ P +LD G G ++ K ++V+ ++ P V GQ+ R Sbjct: 274 MVARALEWLDVQPEDRVLDLFCGMGNFTLPLAKQAASVVGVEGVPALVEKGQQNARLNGL 333 Query: 83 EQFSLFQATFSQ--LQDYVPDKGVDGVVFD 110 + + + + + G D V+ D Sbjct: 334 QNVTFYHENLEEDVTKQPWAKNGFDKVLLD 363 >gi|111021629|ref|YP_704601.1| methyltransferase [Rhodococcus jostii RHA1] gi|110821159|gb|ABG96443.1| possible methyltransferase [Rhodococcus jostii RHA1] Length = 246 Score = 39.4 bits (91), Expect = 0.91, Method: Composition-based stats. Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%) Query: 30 ALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDR--DPFA 70 L PG ++D GAG +S + G++VIA D+ D A Sbjct: 7 DRLGVKPGDKVIDIGAGAGRHSFELYRRGADVIAFDQNADELA 49 >gi|326202114|ref|ZP_08191984.1| rRNA methylase [Clostridium papyrosolvens DSM 2782] gi|325987909|gb|EGD48735.1| rRNA methylase [Clostridium papyrosolvens DSM 2782] Length = 188 Score = 39.4 bits (91), Expect = 0.91, Method: Composition-based stats. Identities = 16/94 (17%), Positives = 36/94 (38%), Gaps = 9/94 (9%) Query: 26 EKVIALLNPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDY 81 ++++ + G ++DAT G G+ F G V + D A++ + + Sbjct: 12 HEIVSRVVCN-GDTVVDATAGN-GHDTVFLARLVGTGGQVYSFDIQESALNTTKNRLESE 69 Query: 82 K--EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + +L + +V + +F+LG Sbjct: 70 NLLSRVNLIHDGHQNMMKHVNKP-IKAAMFNLGY 102 >gi|226364165|ref|YP_002781947.1| hypothetical protein ROP_47550 [Rhodococcus opacus B4] gi|226242654|dbj|BAH53002.1| hypothetical protein [Rhodococcus opacus B4] Length = 246 Score = 39.4 bits (91), Expect = 0.91, Method: Composition-based stats. Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%) Query: 30 ALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDR--DPFA 70 L PG ++D GAG +S + G++VIA D+ D A Sbjct: 7 DRLGVKPGDKVIDIGAGAGRHSFELYRRGADVIAFDQNADELA 49 >gi|148826743|ref|YP_001291496.1| potassium transporter peripheral membrane component [Haemophilus influenzae PittEE] gi|148716903|gb|ABQ99113.1| potassium transporter peripheral membrane component [Haemophilus influenzae PittEE] Length = 451 Score = 39.4 bits (91), Expect = 0.91, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 2/82 (2%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88 LL P + ILDA GG + ++ NVIALD + + +E + +Q + Sbjct: 253 LLEPKNEEWILDACAAPGGKTTHILELAPQSNVIALDVETHRLKRVEENLARLNQQAIVV 312 Query: 89 QATFSQLQDYVPDKGVDGVVFD 110 S+ +++ + V FD Sbjct: 313 CGDASKPDEWLAEISKSAVKFD 334 >gi|92117868|ref|YP_577597.1| dimethyladenosine transferase [Nitrobacter hamburgensis X14] gi|119365039|sp|Q1QKW0|RSMA_NITHX RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|91800762|gb|ABE63137.1| dimethyladenosine transferase [Nitrobacter hamburgensis X14] Length = 287 Score = 39.4 bits (91), Expect = 0.91, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 6/61 (9%) Query: 42 DATF-----GAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95 DAT G GG +R+ MG+ VIA++RD A+ +E Y + ++ A +Q Sbjct: 48 DATVIEIGPGPGGLTRALLAMGAQRVIAIERDARALGALEEISGRYPGRLTIVNADATQF 107 Query: 96 Q 96 Sbjct: 108 D 108 >gi|89895091|ref|YP_518578.1| hypothetical protein DSY2345 [Desulfitobacterium hafniense Y51] gi|219669504|ref|YP_002459939.1| rRNA methylase [Desulfitobacterium hafniense DCB-2] gi|89334539|dbj|BAE84134.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219539764|gb|ACL21503.1| putative rRNA methylase [Desulfitobacterium hafniense DCB-2] Length = 193 Score = 39.4 bits (91), Expect = 0.91, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 6/86 (6%) Query: 33 NPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMRD--YKEQFSL 87 + PG + LD T G G + + V A D A+ Q +++ E+ L Sbjct: 19 SIQPGDIALDLTAGRGRDTLFLAQLVGAEGRVHAFDVQEVALQETQRLLKEQQMAERVHL 78 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGV 113 + +L + V D V +F+LG Sbjct: 79 YHWDHGRLLEKVQDP-VQAAMFNLGY 103 >gi|311105085|ref|YP_003977938.1| gluconate 5-dehydrogenase 2 [Achromobacter xylosoxidans A8] gi|310759774|gb|ADP15223.1| gluconate 5-dehydrogenase 2 [Achromobacter xylosoxidans A8] Length = 259 Score = 39.0 bits (90), Expect = 0.94, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 32/96 (33%), Gaps = 22/96 (22%) Query: 40 ILDATFGAGGY---------------SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84 LD TFG G +R+ + G+ V+ D A + E + Sbjct: 5 YLDRTFGLAGRVALVTGAARGLGYAIARALGQAGAQVVINDLSGDACAAACERLAAEG-- 62 Query: 85 FSLFQATFS-----QLQDYVPDKGVDGVVFDLGVSS 115 A F + D V + G+ D+ VSS Sbjct: 63 IKAHGAPFDVADEKAVADAVAQLEIAGLAIDVLVSS 98 >gi|308471212|ref|XP_003097837.1| hypothetical protein CRE_12932 [Caenorhabditis remanei] gi|308239142|gb|EFO83094.1| hypothetical protein CRE_12932 [Caenorhabditis remanei] Length = 362 Score = 39.0 bits (90), Expect = 0.94, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 11/109 (10%) Query: 9 MSSAIH--HTIGDHVPVLLEKVIALLNPAPGKV-ILDATFGAGGYSRSFCKMGS--NVIA 63 MS A+H H I D +P + ++ L G V +LD G G +S + + + Sbjct: 143 MSQALHEKHVIPDMIPAIGNGIVEKLE--SGGVRVLDVGCGGGFHSSLLAEQYPKAHFVG 200 Query: 64 LDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKGVDGVVF 109 LD A++ ++ + ++ + D D V+ Sbjct: 201 LDIGADAINQAKKRKTKSGGIFNNLEFIECDAGKMPEIWTD-SFDLVLI 248 >gi|14590913|ref|NP_142986.1| fmu protein [Pyrococcus horikoshii OT3] gi|3257494|dbj|BAA30177.1| 450aa long hypothetical fmu protein [Pyrococcus horikoshii OT3] Length = 450 Score = 39.0 bits (90), Expect = 0.95, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 15/96 (15%) Query: 28 VIALLNPAPGKVILDA-------TFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRD 80 V +LNP PG+ +LD TF ++ + + ++A+D + +E M+ Sbjct: 253 VAHVLNPEPGERVLDLAAAPGSKTF----HAAALMENRGEIVAVDYSYDRLIKMRERMKK 308 Query: 81 YK-EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSS 115 + L + Q Y + D ++ D SS Sbjct: 309 LGVKNVKLVH---ADGQSYTEKEKFDKIILDAPCSS 341 >gi|332654338|ref|ZP_08420082.1| methyltransferase domain protein [Ruminococcaceae bacterium D16] gi|332517424|gb|EGJ47029.1| methyltransferase domain protein [Ruminococcaceae bacterium D16] Length = 359 Score = 39.0 bits (90), Expect = 0.95, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 29/68 (42%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H V+ KV LLNP P ILD G G YS + +V+A D V ++ + Sbjct: 159 HREVVRPKVTELLNPDPTDYILDIACGNGNYSAYLAEKAVSVLAFDYSEKMVELAKKRQK 218 Query: 80 DYKEQFSL 87 Y + Sbjct: 219 RYADHIEF 226 >gi|297625401|ref|YP_003687164.1| methyltransferase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921166|emb|CBL55713.1| methyltransferase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 199 Score = 39.0 bits (90), Expect = 0.95, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 37/103 (35%), Gaps = 13/103 (12%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDP 68 M +H H +++ P G +LD G G + VI LD DP Sbjct: 1 MVDYWNHNTAYH-----AELLDA-VPPSGGDVLDIGCGDGLLVEKLATKATRVIGLDPDP 54 Query: 69 FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDL 111 A++ + + + + +F + +DG FDL Sbjct: 55 RAINQARRRLTE-TPNAQVVLGSF------LTAPELDGQSFDL 90 >gi|210614221|ref|ZP_03290116.1| hypothetical protein CLONEX_02329 [Clostridium nexile DSM 1787] gi|210150798|gb|EEA81806.1| hypothetical protein CLONEX_02329 [Clostridium nexile DSM 1787] Length = 311 Score = 39.0 bits (90), Expect = 0.95, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 29/68 (42%) Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 H V+ KV LLNP P ILD G G YS + +V+A D V ++ + Sbjct: 111 HREVVRPKVTELLNPDPTDYILDIACGNGNYSAYLAEKAVSVLAFDYSEKMVELAKKRQK 170 Query: 80 DYKEQFSL 87 Y + Sbjct: 171 RYADHIEF 178 >gi|90419370|ref|ZP_01227280.1| putative protein-L-isoaspartate O-methyltransferase [Aurantimonas manganoxydans SI85-9A1] gi|90336307|gb|EAS50048.1| putative protein-L-isoaspartate O-methyltransferase [Aurantimonas manganoxydans SI85-9A1] Length = 217 Score = 39.0 bits (90), Expect = 0.95, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 4/56 (7%) Query: 29 IALLNPAPGKVILDATFGAG-GYSRSFCK-MGSNVIALDRDPFAVSCGQETMRDYK 82 I L P V+LD G G GYS + + +V++L++DP E + Sbjct: 70 IQLAAIRPDDVVLD--VGCGTGYSSAVLSHLAGSVVSLEQDPDLAEAATENLARLD 123 >gi|193065133|ref|ZP_03046207.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli E22] gi|194426363|ref|ZP_03058918.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli B171] gi|260845431|ref|YP_003223209.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli O103:H2 str. 12009] gi|260856895|ref|YP_003230786.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli O26:H11 str. 11368] gi|192927264|gb|EDV81884.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli E22] gi|194415671|gb|EDX31938.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli B171] gi|257755544|dbj|BAI27046.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli O26:H11 str. 11368] gi|257760578|dbj|BAI32075.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli O103:H2 str. 12009] gi|323154829|gb|EFZ41022.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli EPECa14] gi|323159900|gb|EFZ45870.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli E128010] Length = 433 Score = 39.0 bits (90), Expect = 0.95, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 37/90 (41%), Gaps = 3/90 (3%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82 ++ + + L+ P +LD G G ++ K ++V+ ++ P V GQ+ R Sbjct: 274 MVARALEWLDVQPEDRVLDLFCGMGNFTLPLAKQAASVVGVEGVPALVEKGQQNARLNGL 333 Query: 83 EQFSLFQATFSQ--LQDYVPDKGVDGVVFD 110 + + + + + G D V+ D Sbjct: 334 QNVTFYHENLEEDVTKQPWAKNGFDKVLLD 363 >gi|225858482|ref|YP_002739992.1| SAM-dependent methyltransferase [Streptococcus pneumoniae 70585] gi|225721149|gb|ACO17003.1| SAM-dependent methyltransferase [Streptococcus pneumoniae 70585] Length = 185 Score = 39.0 bits (90), Expect = 0.96, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 10/91 (10%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82 L +V+ V++DAT G G+ + K+ V A D A+ QE + Sbjct: 12 LAEVV----TKED-VVVDATMGN-GHDTLFLAKLAKQVYAFDIQKQALEKTQERLHQAGL 65 Query: 83 EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 L L +V G+ F+LG Sbjct: 66 TNAQLILQGHETLDQFVTKAKA-GI-FNLGY 94 >gi|218555336|ref|YP_002388249.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli IAI1] gi|218696384|ref|YP_002404051.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli 55989] gi|300815798|ref|ZP_07096022.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 107-1] gi|218353116|emb|CAU98943.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli 55989] gi|218362104|emb|CAQ99713.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli IAI1] gi|300531727|gb|EFK52789.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 107-1] gi|323946492|gb|EGB42518.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli H120] gi|324016362|gb|EGB85581.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 117-3] Length = 433 Score = 39.0 bits (90), Expect = 0.98, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 37/90 (41%), Gaps = 3/90 (3%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82 ++ + + L+ P +LD G G ++ K ++V+ ++ P V GQ+ R Sbjct: 274 MVARALEWLDVQPEDRVLDLFCGMGNFTLPLAKQAASVVGVEGVPALVEKGQQNARLNGL 333 Query: 83 EQFSLFQATFSQ--LQDYVPDKGVDGVVFD 110 + + + + + G D V+ D Sbjct: 334 QNVTFYHENLEEDVTKQPWAKNGFDKVLLD 363 >gi|115695312|ref|XP_001199139.1| PREDICTED: similar to MGC80481 protein [Strongylocentrotus purpuratus] gi|115740951|ref|XP_791145.2| PREDICTED: similar to MGC80481 protein [Strongylocentrotus purpuratus] Length = 1449 Score = 39.0 bits (90), Expect = 0.98, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 2/68 (2%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96 +I+DA G+GG + F V+A+D DP + + Y ++ F ++ Sbjct: 1295 LIVDAFCGSGGNAIQFAFTCERVVAVDIDPAKIELARHNATVYGVEDRIEFIVGDFFKVA 1354 Query: 97 DYVPDKGV 104 DY+ V Sbjct: 1355 DYLKADVV 1362 >gi|289581053|ref|YP_003479519.1| methyltransferase type 11 [Natrialba magadii ATCC 43099] gi|289530606|gb|ADD04957.1| Methyltransferase type 11 [Natrialba magadii ATCC 43099] Length = 207 Score = 39.0 bits (90), Expect = 0.99, Method: Composition-based stats. Identities = 11/73 (15%), Positives = 23/73 (31%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83 + ++LL+ +LD G G + + V ALD+ + + Sbjct: 33 MRADALSLLDLEEDMTVLDVGCGTGFATEGLLEHVEEVYALDQSEHQLEQAYAKFGKHAP 92 Query: 84 QFSLFQATFSQLQ 96 + +L Sbjct: 93 PVHFHRGDAERLP 105 >gi|148985234|ref|ZP_01818457.1| rRNA methylase, putative [Streptococcus pneumoniae SP3-BS71] gi|148992239|ref|ZP_01821962.1| rRNA methylase, putative [Streptococcus pneumoniae SP9-BS68] gi|148997267|ref|ZP_01824921.1| rRNA methylase, putative [Streptococcus pneumoniae SP11-BS70] gi|149002339|ref|ZP_01827281.1| rRNA methylase, putative [Streptococcus pneumoniae SP14-BS69] gi|149020266|ref|ZP_01835158.1| rRNA methylase, putative [Streptococcus pneumoniae SP23-BS72] gi|168482881|ref|ZP_02707833.1| SAM-dependent methyltransferase [Streptococcus pneumoniae CDC1873-00] gi|168488333|ref|ZP_02712532.1| SAM-dependent methyltransferase [Streptococcus pneumoniae SP195] gi|168492272|ref|ZP_02716415.1| SAM-dependent methyltransferase [Streptococcus pneumoniae CDC0288-04] gi|168492810|ref|ZP_02716953.1| SAM-dependent methyltransferase [Streptococcus pneumoniae CDC3059-06] gi|168575323|ref|ZP_02721259.1| SAM-dependent methyltransferase [Streptococcus pneumoniae MLV-016] gi|221231470|ref|YP_002510622.1| rRNA methylase [Streptococcus pneumoniae ATCC 700669] gi|225854180|ref|YP_002735692.1| SAM-dependent methyltransferase [Streptococcus pneumoniae JJA] gi|225860645|ref|YP_002742154.1| SAM-dependent methyltransferase [Streptococcus pneumoniae Taiwan19F-14] gi|237650321|ref|ZP_04524573.1| hypothetical protein SpneC1_06279 [Streptococcus pneumoniae CCRI 1974] gi|237821694|ref|ZP_04597539.1| hypothetical protein SpneC19_05192 [Streptococcus pneumoniae CCRI 1974M2] gi|298230021|ref|ZP_06963702.1| hypothetical protein SpneCMD_05066 [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254125|ref|ZP_06977711.1| hypothetical protein SpneCM_00732 [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502448|ref|YP_003724388.1| rRNA methylase [Streptococcus pneumoniae TCH8431/19A] gi|303254765|ref|ZP_07340866.1| hypothetical protein CGSSpBS455_04863 [Streptococcus pneumoniae BS455] gi|303259926|ref|ZP_07345900.1| hypothetical protein CGSSp9vBS293_03943 [Streptococcus pneumoniae SP-BS293] gi|303261331|ref|ZP_07347279.1| hypothetical protein CGSSp14BS292_08330 [Streptococcus pneumoniae SP14-BS292] gi|303263997|ref|ZP_07349918.1| hypothetical protein CGSSpBS397_05302 [Streptococcus pneumoniae BS397] gi|303266311|ref|ZP_07352201.1| hypothetical protein CGSSpBS457_04782 [Streptococcus pneumoniae BS457] gi|303269776|ref|ZP_07355526.1| hypothetical protein CGSSpBS458_01919 [Streptococcus pneumoniae BS458] gi|307067272|ref|YP_003876238.1| SAM-dependent methyltransferase [Streptococcus pneumoniae AP200] gi|147756967|gb|EDK64007.1| rRNA methylase, putative [Streptococcus pneumoniae SP11-BS70] gi|147759654|gb|EDK66645.1| rRNA methylase, putative [Streptococcus pneumoniae SP14-BS69] gi|147922432|gb|EDK73551.1| rRNA methylase, putative [Streptococcus pneumoniae SP3-BS71] gi|147928865|gb|EDK79877.1| rRNA methylase, putative [Streptococcus pneumoniae SP9-BS68] gi|147930568|gb|EDK81550.1| rRNA methylase, putative [Streptococcus pneumoniae SP23-BS72] gi|172043844|gb|EDT51890.1| SAM-dependent methyltransferase [Streptococcus pneumoniae CDC1873-00] gi|183572979|gb|EDT93507.1| SAM-dependent methyltransferase [Streptococcus pneumoniae SP195] gi|183573546|gb|EDT94074.1| SAM-dependent methyltransferase [Streptococcus pneumoniae CDC0288-04] gi|183577040|gb|EDT97568.1| SAM-dependent methyltransferase [Streptococcus pneumoniae CDC3059-06] gi|183578412|gb|EDT98940.1| SAM-dependent methyltransferase [Streptococcus pneumoniae MLV-016] gi|220673930|emb|CAR68439.1| putative rRNA methylase [Streptococcus pneumoniae ATCC 700669] gi|225723979|gb|ACO19832.1| SAM-dependent methyltransferase [Streptococcus pneumoniae JJA] gi|225727226|gb|ACO23077.1| SAM-dependent methyltransferase [Streptococcus pneumoniae Taiwan19F-14] gi|298238043|gb|ADI69174.1| rRNA methylase [Streptococcus pneumoniae TCH8431/19A] gi|301799692|emb|CBW32257.1| putative rRNA methylase [Streptococcus pneumoniae OXC141] gi|301801517|emb|CBW34209.1| putative rRNA methylase [Streptococcus pneumoniae INV200] gi|302598305|gb|EFL65350.1| hypothetical protein CGSSpBS455_04863 [Streptococcus pneumoniae BS455] gi|302637465|gb|EFL67952.1| hypothetical protein CGSSp14BS292_08330 [Streptococcus pneumoniae SP14-BS292] gi|302638845|gb|EFL69306.1| hypothetical protein CGSSpBS293_03943 [Streptococcus pneumoniae SP-BS293] gi|302640698|gb|EFL71095.1| hypothetical protein CGSSpBS458_01919 [Streptococcus pneumoniae BS458] gi|302644122|gb|EFL74379.1| hypothetical protein CGSSpBS457_04782 [Streptococcus pneumoniae BS457] gi|302646402|gb|EFL76628.1| hypothetical protein CGSSpBS397_05302 [Streptococcus pneumoniae BS397] gi|306408809|gb|ADM84236.1| SAM-dependent methyltransferase [Streptococcus pneumoniae AP200] gi|327390384|gb|EGE88725.1| rRNA methylase [Streptococcus pneumoniae GA04375] gi|332075948|gb|EGI86414.1| rRNA methylase [Streptococcus pneumoniae GA41301] Length = 185 Score = 39.0 bits (90), Expect = 0.99, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 10/91 (10%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82 L +V+ V++DAT G G+ + K+ V A D A+ QE + Sbjct: 12 LAEVV----TKED-VVVDATMGN-GHDTLFLAKLAKQVYAFDIQKQALEKTQERLHQAGL 65 Query: 83 EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 L L +V G+ F+LG Sbjct: 66 TNAQLILQGHETLDQFVTKAKA-GI-FNLGY 94 >gi|15902615|ref|NP_358165.1| hypothetical protein spr0571 [Streptococcus pneumoniae R6] gi|116516252|ref|YP_816066.1| hypothetical protein SPD_0567 [Streptococcus pneumoniae D39] gi|182683579|ref|YP_001835326.1| hypothetical protein SPCG_0609 [Streptococcus pneumoniae CGSP14] gi|15458150|gb|AAK99375.1| Conserved hypothetical protein [Streptococcus pneumoniae R6] gi|116076828|gb|ABJ54548.1| rRNA methylase, putative [Streptococcus pneumoniae D39] gi|182628913|gb|ACB89861.1| hypothetical protein SPCG_0609 [Streptococcus pneumoniae CGSP14] Length = 187 Score = 39.0 bits (90), Expect = 0.99, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 10/91 (10%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82 L +V+ V++DAT G G+ + K+ V A D A+ QE + Sbjct: 14 LAEVV----TKED-VVVDATMGN-GHDTLFLAKLAKQVYAFDIQKQALEKTQERLHQAGL 67 Query: 83 EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 L L +V G+ F+LG Sbjct: 68 TNAQLILQGHETLDQFVTKAKA-GI-FNLGY 96 >gi|260584770|ref|ZP_05852515.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Granulicatella elegans ATCC 700633] gi|260157427|gb|EEW92498.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Granulicatella elegans ATCC 700633] Length = 455 Score = 39.0 bits (90), Expect = 1.0, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 1/66 (1%) Query: 23 VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR-DY 81 VL + I + ++DA G G S +F K V A++ P A+ +E R + Sbjct: 294 VLYHEAIQAAGLTGDETVVDAYCGIGTMSLAFAKRAKKVYAMEIVPDAIQMAKENARINQ 353 Query: 82 KEQFSL 87 + + Sbjct: 354 IDNVTF 359 >gi|332687128|ref|YP_004456902.1| SAM-dependent methyltransferase, MraW methylase family [Melissococcus plutonius ATCC 35311] gi|332371137|dbj|BAK22093.1| SAM-dependent methyltransferase, MraW methylase family [Melissococcus plutonius ATCC 35311] Length = 187 Score = 39.0 bits (90), Expect = 1.0, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 11/96 (11%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETM-- 78 LL ++ PG ++DAT G G + K+ V A D A+ ++ + Sbjct: 12 LLNEI-----ICPGDHVVDATMGNGNDTLFLAKLVGDKGKVYAFDIQKQALERTRQRLIE 66 Query: 79 RDYKEQFSLFQATFSQLQDYVP-DKGVDGVVFDLGV 113 + LFQ ++ +P + + +F+LG Sbjct: 67 NQVIQCTELFQQGHETIEQVLPIETTLSAAIFNLGY 102 >gi|330012192|ref|ZP_08307325.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Klebsiella sp. MS 92-3] gi|328533894|gb|EGF60562.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Klebsiella sp. MS 92-3] Length = 434 Score = 39.0 bits (90), Expect = 1.0, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 32/89 (35%), Gaps = 3/89 (3%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82 ++ + L+ P +LD G G ++ ++V+ ++ P V G+E Sbjct: 274 MVRTALEWLDLRPEDRVLDLFCGMGNFTLPLATRAAHVVGVEGVPALVEKGRENAARNGL 333 Query: 83 EQFSLFQATFSQ--LQDYVPDKGVDGVVF 109 + F + + G D V+ Sbjct: 334 SNVTFFHENLEEDVTRQAWAKHGFDKVLL 362 >gi|254824274|ref|ZP_05229275.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194] gi|254852289|ref|ZP_05241637.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503] gi|255521499|ref|ZP_05388736.1| hypothetical protein LmonocFSL_09805 [Listeria monocytogenes FSL J1-175] gi|258605595|gb|EEW18203.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503] gi|293593509|gb|EFG01270.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194] Length = 192 Score = 39.0 bits (90), Expect = 1.0, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 33/86 (38%), Gaps = 8/86 (9%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK--EQFSL 87 PG +DAT G G+ +V+ D AV + + + Q L Sbjct: 18 VRPGDYAIDATCGN-GHDTLLLAELVGINGHVLGFDIQQMAVDATKARLENAGVSSQVEL 76 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGV 113 A+ +++ Y + V +F+LG Sbjct: 77 VCASHARIPAY-TSRPVRAAIFNLGY 101 >gi|294495588|ref|YP_003542081.1| methyltransferase type 12 [Methanohalophilus mahii DSM 5219] gi|292666587|gb|ADE36436.1| Methyltransferase type 12 [Methanohalophilus mahii DSM 5219] Length = 187 Score = 39.0 bits (90), Expect = 1.0, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 55/156 (35%), Gaps = 14/156 (8%) Query: 29 IALLNPAPGKVILDATFGAGG-----YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83 I L + ILD FG GG + N++ +D F + ++ M+D+ Sbjct: 30 IQGLQLKGDENILD--FGCGGGAASKHIAEALSDSGNLVCIDTSAFWMEKAKKRMKDF-S 86 Query: 84 QFSLFQATFSQL---QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR---M 137 DY + V+ D+ + Q F +K+G + +R Sbjct: 87 NVEFICERIEDANLPDDYFDSVFIHFVLHDIDENDRQEILNSLAFKLKKNGLIYIREPTK 146 Query: 138 SCSGISASDVVNQANVKDLTRILGILGEEKQASRIA 173 + G+S ++V L + G+ GE + Sbjct: 147 NDHGMSPVEIVEHMKKAGLAELSGMHGEYFRWPHYT 182 >gi|240139687|ref|YP_002964164.1| putative SUN-family protein, RNA methyltransferase [Methylobacterium extorquens AM1] gi|240009661|gb|ACS40887.1| putative SUN-family protein, RNA methyltransferase [Methylobacterium extorquens AM1] Length = 449 Score = 39.0 bits (90), Expect = 1.0, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 10/84 (11%) Query: 35 APGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMRDYKEQFSLF--- 88 G+ ++D G GG S + +++IA D DP ++ E +R Q + Sbjct: 249 KSGETVVDLCAGGGGKSLALAAITGNAAHIIATDADPRRLAPIHERLRRSGAQVEVRTPR 308 Query: 89 --QATFSQLQDYVPDKGVDGVVFD 110 +A L D D VD V+ D Sbjct: 309 TGKARADVLADL--DGTVDRVLVD 330 >gi|298248548|ref|ZP_06972353.1| Methyltransferase type 12 [Ktedonobacter racemifer DSM 44963] gi|297551207|gb|EFH85073.1| Methyltransferase type 12 [Ktedonobacter racemifer DSM 44963] Length = 176 Score = 39.0 bits (90), Expect = 1.0, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 34/82 (41%), Gaps = 8/82 (9%) Query: 35 APGKVILDATFGAGGYSRS---FCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91 APG D G G ++ + G+++ ++D+D A+ QE R + +F Sbjct: 16 APGGTWADLGSGGGAFTLALANLLGSGAHIYSVDQDKRAL---QEQARAMRARFPAVAVE 72 Query: 92 F--SQLQDYVPDKGVDGVVFDL 111 + + + +DG++ Sbjct: 73 YIVADFTRLLNLPPLDGILLAN 94 >gi|223043516|ref|ZP_03613561.1| SAM-dependent methyltransferase, MraW methylase family [Staphylococcus capitis SK14] gi|314933913|ref|ZP_07841278.1| SAM-dependent methyltransferase, MraW methylase family [Staphylococcus caprae C87] gi|222443004|gb|EEE49104.1| SAM-dependent methyltransferase, MraW methylase family [Staphylococcus capitis SK14] gi|313654063|gb|EFS17820.1| SAM-dependent methyltransferase, MraW methylase family [Staphylococcus caprae C87] Length = 187 Score = 39.0 bits (90), Expect = 1.0, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 6/80 (7%) Query: 39 VILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ 96 +++DAT G G + + V D A+ Q + D+ SL Q + ++ Sbjct: 23 IVIDATCGNGNDTLYLAEKVTNGFVYGFDIQKEAIDNTQLKVSDF-NNVSLIQDSHENVK 81 Query: 97 DYVPDKG---VDGVVFDLGV 113 +V ++ +D +F+LG Sbjct: 82 QHVLERHLNLIDCAIFNLGY 101 >gi|170765935|ref|ZP_02900746.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia albertii TW07627] gi|170125081|gb|EDS94012.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia albertii TW07627] Length = 433 Score = 39.0 bits (90), Expect = 1.0, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 34/90 (37%), Gaps = 3/90 (3%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82 ++ + + L+ P +LD G G ++ ++V+ ++ P V GQE R Sbjct: 274 MVAQALEWLDVQPDDRVLDLFCGMGNFTLPVATRAASVVGVEGVPALVEKGQENARLNGL 333 Query: 83 EQFSLFQATFSQ--LQDYVPDKGVDGVVFD 110 + + + G D V+ D Sbjct: 334 HNVTFYHENLEDDVTKQPWAKNGFDKVLLD 363 >gi|268590145|ref|ZP_06124366.1| SmtA protein [Providencia rettgeri DSM 1131] gi|291314419|gb|EFE54872.1| SmtA protein [Providencia rettgeri DSM 1131] Length = 262 Score = 39.0 bits (90), Expect = 1.1, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 7/74 (9%) Query: 40 ILDATFGAG-GY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQL 95 ILDA G G G+ SR +MG VI D + G E ++ + + Sbjct: 49 ILDA--GGGEGHFSRKLAEMGHQVILCDLSEEMLERGSELAKEQGISDNMRFVHCAVQDI 106 Query: 96 QDYVPDKGVDGVVF 109 Y+ + VD V+F Sbjct: 107 AQYIDEP-VDLVLF 119 >gi|218884374|ref|YP_002428756.1| RNA (Cytosine-C(5)-)-methyltransferase [Desulfurococcus kamchatkensis 1221n] gi|218765990|gb|ACL11389.1| RNA (Cytosine-C(5)-)-methyltransferase [Desulfurococcus kamchatkensis 1221n] Length = 386 Score = 39.0 bits (90), Expect = 1.1, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 6/89 (6%) Query: 32 LNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK---EQF 85 L+P PG++I+D GG + K G+ +IA+DR P ++ + + + Sbjct: 185 LDPRPGELIVDMNASPGGKTSHIVQLTKGGARIIAIDRSPGKIAELKNNLSNLDLDLNVI 244 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 ++ + D+ VD V+ D S Sbjct: 245 AIPHDSRYLHYDFSLLGKVDKVLIDPPCS 273 >gi|253699523|ref|YP_003020712.1| rRNA methylase [Geobacter sp. M21] gi|251774373|gb|ACT16954.1| putative rRNA methylase [Geobacter sp. M21] Length = 195 Score = 39.0 bits (90), Expect = 1.1, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 8/84 (9%) Query: 36 PGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQ--- 89 PG ++LDAT G G + ++ G V A D P A++ + + + + Sbjct: 24 PGDLVLDATCGNGFDTLLLAELTGEGGEVWAFDVQPRAIAATRALLEREG-RLAAVHLLE 82 Query: 90 ATFSQLQDYVPDKGVDGVVFDLGV 113 A ++ ++VP G+ VF+LG Sbjct: 83 AGHERVSEFVPA-GLAAAVFNLGY 105 >gi|325924132|ref|ZP_08185695.1| methylase involved in ubiquinone/menaquinone biosynthesis [Xanthomonas gardneri ATCC 19865] gi|325545369|gb|EGD16660.1| methylase involved in ubiquinone/menaquinone biosynthesis [Xanthomonas gardneri ATCC 19865] Length = 232 Score = 39.0 bits (90), Expect = 1.1, Method: Composition-based stats. Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 9/103 (8%) Query: 15 HTIGDHVPVLLEKVIALLNPAP----GKVILDATFGAGGYSRSFCKMGS-NVIALDRDPF 69 + H PV+L + A+L P G+ +LDA G+G Y + G+ ++ +D P Sbjct: 20 YPPHAHNPVMLAEERAMLALMPGALQGQHVLDAGCGSGRYMLHALRRGALHITGVDLSPQ 79 Query: 70 AVS-CGQETMRDYK-EQFSLFQATFSQ--LQDYVPDKGVDGVV 108 + E RD+ + +L Q + + L D + D V G+V Sbjct: 80 MLQRAATELARDWPAARVTLQQGSLDKLPLPDALADLSVCGLV 122 >gi|313892229|ref|ZP_07825822.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Dialister microaerophilus UPII 345-E] gi|313119367|gb|EFR42566.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Dialister microaerophilus UPII 345-E] Length = 545 Score = 39.0 bits (90), Expect = 1.1, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 38/93 (40%), Gaps = 2/93 (2%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83 L EK + N + ++DA G G S + +VI ++ A+ +E + + Sbjct: 293 LYEKALDFANLFGDETVIDAYCGTGTISLYLAQKAKHVIGIEIIKDAIENAKENAK--RN 350 Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSM 116 + + + + Y+P+ G+ ++ V Sbjct: 351 KIKNVEFHAADVAKYLPELAKKGIKAEVMVLDP 383 >gi|15603426|ref|NP_246500.1| hypothetical protein PM1561 [Pasteurella multocida subsp. multocida str. Pm70] gi|46397017|sp|Q9CKP7|RSMB_PASMU RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|12721953|gb|AAK03645.1| Sun [Pasteurella multocida subsp. multocida str. Pm70] Length = 446 Score = 39.0 bits (90), Expect = 1.1, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 2/82 (2%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88 LL P G++ILDA GG + + +V+ALD + + E + ++Q ++ Sbjct: 248 LLAPENGELILDACAAPGGKTTHILEQAPQAHVVALDVEATRLKRVHENLARMQQQATVI 307 Query: 89 QATFSQLQDYVPDKGVDGVVFD 110 +Q ++ V FD Sbjct: 308 CGDATQPAQWLKQLSESAVQFD 329 >gi|326384262|ref|ZP_08205944.1| type 11 methyltransferase [Gordonia neofelifaecis NRRL B-59395] gi|326197127|gb|EGD54319.1| type 11 methyltransferase [Gordonia neofelifaecis NRRL B-59395] Length = 240 Score = 39.0 bits (90), Expect = 1.1, Method: Composition-based stats. Identities = 12/37 (32%), Positives = 20/37 (54%) Query: 30 ALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDR 66 L+ PG ++D G G +S + G++VIA D+ Sbjct: 4 DRLDVGPGVRVIDIGAGQGRHSYEMLRRGADVIAFDQ 40 >gi|255544606|ref|XP_002513364.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis] gi|223547272|gb|EEF48767.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis] Length = 286 Score = 39.0 bits (90), Expect = 1.1, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 48/120 (40%), Gaps = 26/120 (21%) Query: 7 KTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGY-SRSFCKM------GS 59 K ++ + H + H VL G ++DAT G G+ + + KM Sbjct: 76 KKKATEVAHLVWKH--VL----------QKGDTVVDATCGN-GHDTLALLKMVADESGNG 122 Query: 60 NVIALDRDPFAVSCGQETM-----RDYKEQFSLFQATFSQLQDYVPDK-GVDGVVFDLGV 113 +V +D A+ + + KE LF S++++ VP+ V V F+LG Sbjct: 123 HVYGMDIQSDALDNTSSLLDETVTSEEKELVKLFSICHSRMEEIVPENTPVRLVAFNLGY 182 >gi|18976541|ref|NP_577898.1| nol1-nop2-sun family nucleolar protein III [Pyrococcus furiosus DSM 3638] gi|18892094|gb|AAL80293.1| putative nucleolar protein III (nol1-nop2-sun family) [Pyrococcus furiosus DSM 3638] Length = 386 Score = 39.0 bits (90), Expect = 1.1, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 34/91 (37%), Gaps = 11/91 (12%) Query: 32 LNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQFSL 87 L P ++I+D GG + + +IA+D+ + +E ++ + L Sbjct: 194 LEPKEEEIIIDMAAAPGGKTSHIAQLLQNRGEIIAIDKSKNRLKKMEENLKRLGVKNVKL 253 Query: 88 FQATFSQLQDYVPDKGVDGVVFD-----LGV 113 Q L + D ++ D LGV Sbjct: 254 IQMDARNLPEL--GIKADKILLDAPCTALGV 282 >gi|85711007|ref|ZP_01042068.1| tRNA and rRNA methylase [Idiomarina baltica OS145] gi|85695411|gb|EAQ33348.1| tRNA and rRNA methylase [Idiomarina baltica OS145] Length = 437 Score = 39.0 bits (90), Expect = 1.1, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 30/88 (34%), Gaps = 3/88 (3%) Query: 30 ALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDYKEQFS 86 +++ P +LD GG + + +IA+D D + E + Sbjct: 247 DMVDAQPEHRVLDCCAAPGGKTVHLLERTEFQTPLIAIDVDEQRLERVSENLYRADLSCE 306 Query: 87 LFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + A L + + D ++ D S Sbjct: 307 VVCADVLDLDSWWDKQPFDRILLDAPCS 334 >gi|307091868|gb|ADN28269.1| putative rRNA methyltransferase [uncultured bacterium] Length = 123 Score = 39.0 bits (90), Expect = 1.1, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 32/68 (47%), Gaps = 2/68 (2%) Query: 46 GAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDY-VPDKG 103 G GG +R+ G+ VIA++RD A++ +E + + ++ + + + G Sbjct: 27 GPGGLTRALLTEGARKVIAIERDQRAIAALEEIAEHHPGRLTIVAGDALEFDPKPLLESG 86 Query: 104 VDGVVFDL 111 +V +L Sbjct: 87 PVRIVANL 94 >gi|226311849|ref|YP_002771743.1| transcriptional regulator [Brevibacillus brevis NBRC 100599] gi|226094797|dbj|BAH43239.1| probable transcriptional regulator [Brevibacillus brevis NBRC 100599] Length = 345 Score = 39.0 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 1/69 (1%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84 L++V+A + PG+ LDA G G + K G+ + D+ P + + + + + Sbjct: 167 LDEVVAAVAVKPGECGLDAGTGTGNLAGRLVKKGAKMSGFDQSPQMLKQCRAKHAEVETK 226 Query: 85 F-SLFQATF 92 + F F Sbjct: 227 LGTFFAFPF 235 >gi|168044055|ref|XP_001774498.1| predicted protein [Physcomitrella patens subsp. patens] gi|162674210|gb|EDQ60722.1| predicted protein [Physcomitrella patens subsp. patens] Length = 208 Score = 39.0 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 12/102 (11%) Query: 14 HHTIGDHV-PVLLEKVIALLNPAPGKVILD-----ATFGAGGYSRSFCKMGSNVIALDRD 67 + G H+ +L GKV+ D T G + + G V+ +D D Sbjct: 25 QYPTGPHIASRMLYMAENSFGDITGKVVADLGCGCGTLGI---AAALLDAG-QVVGVDVD 80 Query: 68 PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVF 109 A++ QE + + + L QA S+L + VD VV Sbjct: 81 EDALALAQENCEELEVEMDLIQANLSELP--LQGLVVDTVVM 120 >gi|114562226|ref|YP_749739.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella frigidimarina NCIMB 400] gi|122300475|sp|Q086B4|RUMA_SHEFN RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|114333519|gb|ABI70901.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shewanella frigidimarina NCIMB 400] Length = 455 Score = 39.0 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 39/89 (43%), Gaps = 2/89 (2%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET-MRDYK 82 ++++ I L+P G+ ILD G G +S + VI ++ P V ++ + + Sbjct: 297 MVDQAIEWLDPQSGERILDLFCGVGNFSLPLALKAAEVIGVEGVPEMVQQAKQNAIDNQL 356 Query: 83 EQFSLFQATFS-QLQDYVPDKGVDGVVFD 110 + + + A S L +D ++ D Sbjct: 357 DNVTFYHADLSADLSTQTWLGKIDKLLLD 385 >gi|83815307|ref|YP_445018.1| ribosomal RNA small subunit methyltransferase B [Salinibacter ruber DSM 13855] gi|83756701|gb|ABC44814.1| ribosomal RNA small subunit methyltransferase B [Salinibacter ruber DSM 13855] Length = 427 Score = 39.0 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 41/90 (45%), Gaps = 7/90 (7%) Query: 28 VIALLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84 V+ LL+P PG+ ++D GG ++ + + + A+DRD + ET + + Sbjct: 224 VVQLLDPQPGETLIDGCAAPGGKAMHAAARMEGTGTIYAVDRDEQRLER-VETAAEAQGA 282 Query: 85 FSLFQATFSQLQDYVPDKGV---DGVVFDL 111 + +A + L+ + D V+ D+ Sbjct: 283 SEMVEAETADLRAWAARPEPPQGDRVLLDV 312 >gi|195449996|ref|XP_002072318.1| GK22390 [Drosophila willistoni] gi|194168403|gb|EDW83304.1| GK22390 [Drosophila willistoni] Length = 226 Score = 39.0 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 43/119 (36%), Gaps = 16/119 (13%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQ 96 +I+DA G GG + F VIA+D D ++ + + Y + A F Q Sbjct: 52 LIVDAFCGCGGNAIQFALTCQRVIAIDIDAQKLAMAKHNAKIYNVDHKIEFIHADFLQFA 111 Query: 97 D--YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANV 153 + V S + + K D+ ++ + A++++N A Sbjct: 112 KSTLLKPNMV--------FLSPPWGGPE----YLKHANFDIELNLLPVGATELMNCARQ 158 >gi|193216311|ref|YP_001997510.1| type 11 methyltransferase [Chloroherpeton thalassium ATCC 35110] gi|193089788|gb|ACF15063.1| Methyltransferase type 11 [Chloroherpeton thalassium ATCC 35110] Length = 213 Score = 39.0 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 17/99 (17%), Positives = 37/99 (37%), Gaps = 6/99 (6%) Query: 26 EKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQ 84 ++V +L PG +LD G G +S + G V +D +S ++ + + + Sbjct: 31 DRVFDVL--KPGAKVLDIGCGTGNFSIKMARRGFQVTGVDISGEMISVAKKRLMETRLPN 88 Query: 85 FSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDR 123 L D + + ++ S ++ +R Sbjct: 89 LQFLHINGVYLPDELNEHYDAAILS---FSIHEMAPPER 124 >gi|134045414|ref|YP_001096900.1| precorrin-6Y C5,15-methyltransferase subunit CbiT [Methanococcus maripaludis C5] gi|166225720|sp|A4FWV6|CBIT_METM5 RecName: Full=Probable cobalt-precorrin-6Y C(15)-methyltransferase [decarboxylating] gi|132663039|gb|ABO34685.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit [Methanococcus maripaludis C5] Length = 181 Score = 39.0 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 8/94 (8%) Query: 21 VPVLLEKV----IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQE 76 VP+ E++ I LN P ++LD G+GG S K V ++D A + Sbjct: 13 VPITKEEIRAVSIGKLNLDPEDIVLDIGCGSGGMSVEIAKRSKFVYSIDNSEDAKNTTSI 72 Query: 77 TMRDYK-EQFSLFQATFSQLQDYVPDKGVDGVVF 109 ++ +K E +F +D + + V Sbjct: 73 NLKKFKIENCEVFHG---DAKDLISKFDFNKVFI 103 >gi|332185131|ref|ZP_08386880.1| NOL1/NOP2/sun family protein [Sphingomonas sp. S17] gi|332014855|gb|EGI56911.1| NOL1/NOP2/sun family protein [Sphingomonas sp. S17] Length = 395 Score = 39.0 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 39/96 (40%), Gaps = 14/96 (14%) Query: 30 ALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQETMRDYKEQ-- 84 A L P PG+ ++D GAGG + ++A D D + + + E+ Sbjct: 197 AALAPQPGEWLVDLCAGAGGKTLQIGAAMDNRGALLACDIDRARL----QRLAPRAERAG 252 Query: 85 FSLFQA---TFSQLQDYVPDK--GVDGVVFDLGVSS 115 ++ ++ + ++ + D DGV+ D S Sbjct: 253 VTIVESRLLNPGREREMLSDWIAKADGVLIDAPCSG 288 >gi|149177324|ref|ZP_01855929.1| Putative rRNA methylase superfamily protein [Planctomyces maris DSM 8797] gi|148843849|gb|EDL58207.1| Putative rRNA methylase superfamily protein [Planctomyces maris DSM 8797] Length = 189 Score = 39.0 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 9/87 (10%) Query: 35 APGKVILDATFGAGGY-SRSFCKMG---SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQ 89 PG+ +DAT G G+ +R C++ V A+D A+ +++ + F L Sbjct: 17 QPGETAVDATAGN-GHDTRFLCELAGKSGKVFAIDIQQQALDQTAVMLQELEYHNFELIC 75 Query: 90 ATFSQLQDYVP---DKGVDGVVFDLGV 113 + + +P + V+F+LG Sbjct: 76 GDHRLISELIPTQYQGRIGAVMFNLGY 102 >gi|126739968|ref|ZP_01755658.1| protein-L-isoaspartate O-methyltransferase [Roseobacter sp. SK209-2-6] gi|126718787|gb|EBA15499.1| protein-L-isoaspartate O-methyltransferase [Roseobacter sp. SK209-2-6] Length = 217 Score = 39.0 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 24/107 (22%), Positives = 42/107 (39%), Gaps = 11/107 (10%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYKE 83 L KV+ L+ P +++LD G GYS + + VI ++ D + QE + Sbjct: 67 LAKVLDALDIQPNELVLDVACGQ-GYSTAVAAQMAEMVIGVEEDETMAAEAQEQLSTIGA 125 Query: 84 QFSLFQATFSQLQDYVPDKG-VDGVVFDLGV------SSMQIDCGDR 123 ++ L + + G D ++ GV Q+ G R Sbjct: 126 DNAIVH--MGPLTEGAAEHGPYDVIMVQGGVETVPEGLLNQLKDGGR 170 >gi|242238299|ref|YP_002986480.1| 23S rRNA 5-methyluridine methyltransferase [Dickeya dadantii Ech703] gi|242130356|gb|ACS84658.1| RNA methyltransferase, TrmA family [Dickeya dadantii Ech703] Length = 442 Score = 39.0 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 37/90 (41%), Gaps = 3/90 (3%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82 ++ + + L+P P + +LD G G ++ + ++V+ ++ V G+E Sbjct: 280 MVAQALEWLDPQPHERVLDLFCGMGNFTLPLARRAASVVGVEGVAALVEKGRENAERNAF 339 Query: 83 EQFSLFQATFSQ--LQDYVPDKGVDGVVFD 110 + F + + +G D ++ D Sbjct: 340 GNVTFFHQNLEEDVTRQPWAAQGFDKILLD 369 >gi|224046260|ref|XP_002197924.1| PREDICTED: trimethylguanosine synthase homolog [Taeniopygia guttata] Length = 892 Score = 38.6 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 33/91 (36%), Gaps = 8/91 (8%) Query: 11 SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFA 70 S I +H+ V +V N +I+DA G GG + F VIA+D DP Sbjct: 712 SVTPEKIAEHIAV---RVSQSFNCD---IIVDAFCGVGGNAIQFALTSKRVIAIDIDPEK 765 Query: 71 VSCGQETMRDYK--EQFSLFQATFSQLQDYV 99 + + Y E F L + Sbjct: 766 LRLARHNAEVYGVAEHIDFLCGDFMALAAGL 796 >gi|222153492|ref|YP_002562669.1| RNA methyltransferase [Streptococcus uberis 0140J] gi|222114305|emb|CAR42966.1| putative RNA methyltransferase [Streptococcus uberis 0140J] Length = 451 Score = 38.6 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 38/95 (40%), Gaps = 12/95 (12%) Query: 21 VPVLLEKVIALLNPAPGKVILD-----ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQ 75 VL +V+ L + I+D T G +F K ++ +D P A+ + Sbjct: 290 TSVLYAQVVEALEVSESDHIIDAYCGVGTIGF-----AFAKKVKSIRGMDIIPEAIEDAK 344 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFD 110 + +D + + ++ + +D +P DG D Sbjct: 345 KNAQDMGFENTYYEC--GKAEDIIPKWYQDGYRAD 377 >gi|2246452|gb|AAB62807.1| S-adenosyl-methionine-sterol-C-methyltransferase homolog [Nicotiana tabacum] Length = 352 Score = 38.6 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 34/88 (38%), Gaps = 7/88 (7%) Query: 25 LEK--VIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPF--AVSCGQETMR 79 L + + LL PG +LDA G GG R+ G+N++ + + + + Sbjct: 105 LHEEMAVDLLGIKPGARVLDAGCGVGGPMRAIAAHSGANIVGITINEYQVNRARAHNKKA 164 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGV 107 Q + F Q+ D DGV Sbjct: 165 GLDSQCEVVCGNFLQMP--FDDNSFDGV 190 >gi|332687203|ref|YP_004456977.1| TrmA family RNA methyltransferase [Melissococcus plutonius ATCC 35311] gi|332371212|dbj|BAK22168.1| RNA methyltransferase, TrmA family [Melissococcus plutonius ATCC 35311] Length = 212 Score = 38.6 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 37/96 (38%), Gaps = 13/96 (13%) Query: 23 VLLEKVIALLNPAPGKVILD-----ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77 +L + I L+P P I+D T G S + V +D P A+ ++ Sbjct: 52 ILYGEAIKALDPLPSDKIIDAYCGVGTIG-----ISIARKVKEVRGMDTIPQAIEDAKQN 106 Query: 78 MRDYKEQFSLFQ-ATFSQLQDYVPDKGV--DGVVFD 110 + + ++ +L ++G DG++ D Sbjct: 107 AKKVNATNTYYEVGNAEKLLPKWLEQGFIPDGIIVD 142 >gi|285019616|ref|YP_003377327.1| tRNA and rRNA cytosine-c5-methylase [Xanthomonas albilineans GPE PC73] gi|283474834|emb|CBA17333.1| putative trna and rrna cytosine-c5-methylase protein [Xanthomonas albilineans] Length = 437 Score = 38.6 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 27/93 (29%), Positives = 38/93 (40%), Gaps = 4/93 (4%) Query: 26 EKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKE 83 ++V +L PAPG +LDA GG S + + ALD D + +ET Sbjct: 237 QQVADVLAPAPGARVLDACAAPGGKSAHLLERDPTLCLTALDVDARRLQRVRETFERIGS 296 Query: 84 --QFSLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 Q L A +Q Q + D V+ D S Sbjct: 297 GTQARLQVADAAQPQTWWDGVPFDAVLLDAPCS 329 >gi|194398444|ref|YP_002037310.1| hypothetical protein SPG_0595 [Streptococcus pneumoniae G54] gi|194358111|gb|ACF56559.1| conserved hypothetical protein [Streptococcus pneumoniae G54] Length = 185 Score = 38.6 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 10/91 (10%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82 L +V+ V++DAT G G+ + K+ V A D A+ QE + Sbjct: 12 LAEVV----TKED-VVVDATMGN-GHDTLFLAKLAKQVYAFDIQKQALKKTQERLHQAGL 65 Query: 83 EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 L L +V G+ F+LG Sbjct: 66 TNAQLILQGHETLDQFVTKTKA-GI-FNLGY 94 >gi|20093808|ref|NP_613655.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19] gi|19886728|gb|AAM01585.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19] Length = 323 Score = 38.6 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 12/108 (11%) Query: 11 SAIHHTIGDHVPV----LLEKVIALLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIA 63 + + + +G +VP +L V+ L+P PG +LDA GG + +IA Sbjct: 97 ATLEYMMGYYVPQDAASMLPPVV--LDPKPGDRVLDACAAPGGKTTHLAQLMDNEGTLIA 154 Query: 64 LDRDPFAVSCGQETMRDYK-EQFSLFQATFSQLQDYVPDKGVDGVVFD 110 +D DP + + + + L D D ++ D Sbjct: 155 IDVDPDRMRALKSNLARCGVANAVALRMNALDLPS--TDWEFDRILLD 200 >gi|58267256|ref|XP_570784.1| hypothetical protein [Cryptococcus neoformans var. neoformans JEC21] gi|57227018|gb|AAW43477.1| conserved hypothetical protein [Cryptococcus neoformans var. neoformans JEC21] Length = 427 Score = 38.6 bits (89), Expect = 1.3, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 2/67 (2%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96 VI+DA G GG + +F K VIA+D D + + + ++ +++ Sbjct: 250 VIVDAFCGVGGNAIAFAKTCERVIAIDNDITRLKLARHNALHHGVADRIEFILGDYTEFA 309 Query: 97 DYVPDKG 103 +K Sbjct: 310 RSFAEKN 316 >gi|134111829|ref|XP_775450.1| hypothetical protein CNBE1650 [Cryptococcus neoformans var. neoformans B-3501A] gi|50258109|gb|EAL20803.1| hypothetical protein CNBE1650 [Cryptococcus neoformans var. neoformans B-3501A] Length = 427 Score = 38.6 bits (89), Expect = 1.3, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 2/67 (2%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96 VI+DA G GG + +F K VIA+D D + + + ++ +++ Sbjct: 250 VIVDAFCGVGGNAIAFAKTCERVIAIDNDITRLKLARHNALHHGVADRIEFILGDYTEFA 309 Query: 97 DYVPDKG 103 +K Sbjct: 310 RSFAEKN 316 >gi|307132808|ref|YP_003884824.1| Ribosomal RNA small subunit methyltransferase B [Dickeya dadantii 3937] gi|306530337|gb|ADN00268.1| Ribosomal RNA small subunit methyltransferase B [Dickeya dadantii 3937] Length = 431 Score = 38.6 bits (89), Expect = 1.3, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 34/89 (38%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQF 85 I L P + ILD GG + + + V+A+D D + +E ++ + Sbjct: 238 CIHWLAPQDHEEILDLCAAPGGKTTHILEAAPHAHVLAVDVDEQRLKRVRENLQRLGQHA 297 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + ++ DK D ++ D S Sbjct: 298 EVKCGDGRTPTEWCGDKLFDRILLDAPCS 326 >gi|13541750|ref|NP_111438.1| precorrin-6Y methylase [Thermoplasma volcanium GSS1] gi|48428139|sp|Q97A64|CBIT_THEVO RecName: Full=Probable cobalt-precorrin-6Y C(15)-methyltransferase [decarboxylating] gi|14325163|dbj|BAB60088.1| precorrin-8w decarboxylase [Thermoplasma volcanium GSS1] Length = 201 Score = 38.6 bits (89), Expect = 1.3, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 30/91 (32%), Gaps = 16/91 (17%) Query: 28 VIALLNPAPGKVILD-ATFGAGGYSRS-----FCKMGSNVIALDRDPFAVSCGQ---ETM 78 + L G LD T G G S + +IALDRD A+ + + + Sbjct: 36 SLNRLGVRNGGHFLDIGT-GTG--SVAVDMSRLAGPNGKIIALDRDEKAIKLARINLDRL 92 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVDGVVF 109 YK Q + Y P D + Sbjct: 93 SPYKN----IQLVLADAYAYSPADSFDAIFI 119 >gi|284031466|ref|YP_003381397.1| type 11 methyltransferase [Kribbella flavida DSM 17836] gi|283810759|gb|ADB32598.1| Methyltransferase type 11 [Kribbella flavida DSM 17836] Length = 251 Score = 38.6 bits (89), Expect = 1.3, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 36/97 (37%), Gaps = 3/97 (3%) Query: 30 ALLNPAP-GKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLF 88 +L+ P +LD + G G + G V+A D V E ++ Sbjct: 31 DVLSLLPSNAHVLDCSCGTGQLAVGLAGRGLQVVATDASEAMVRRTAELSAEFGASVRAV 90 Query: 89 QATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCG-DRG 124 +A + +L D+ D D V F +G S RG Sbjct: 91 RANWEELPDHFEDDTFDMV-FCVGNSLHHAMGATGRG 126 >gi|312837869|gb|ADR01068.1| NocQ [Nocardia sp. ATCC 202099] Length = 207 Score = 38.6 bits (89), Expect = 1.3, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 27/93 (29%), Gaps = 4/93 (4%) Query: 30 ALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQ 89 L P LD G GG S + G +V D P A+ ++ D + Sbjct: 49 DRLAP---GRALDLGCGTGGKSIYLAEHGWSVTGADIAPEALRRARKRAGDAGVDVEFVE 105 Query: 90 ATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGD 122 + D + D G S D Sbjct: 106 CDLVDIPAGALGGPYD-FLLDFGCSHSLRDEAK 137 >gi|14521110|ref|NP_126585.1| sun protein (fmu protein) [Pyrococcus abyssi GE5] gi|5458327|emb|CAB49816.1| Sun/NOL1/NOP nucleolar protein [Pyrococcus abyssi GE5] Length = 450 Score = 38.6 bits (89), Expect = 1.3, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 41/96 (42%), Gaps = 15/96 (15%) Query: 28 VIALLNPAPGKVILDA-------TFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRD 80 V +LNP PG+ +LD TF ++ + + ++A+D + +E M+ Sbjct: 253 VAHVLNPEPGERVLDLAAAPGSKTF----HAAALMENKGEIVAVDYSYDRLMKMKERMKR 308 Query: 81 YK-EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSS 115 + L + Q ++ +G + ++ D SS Sbjct: 309 LGVKNVKLVH---ADGQSFIDREGFEKIILDAPCSS 341 >gi|312173998|emb|CBX82251.1| Ribosomal RNA small subunit methyltransferase B [Erwinia amylovora ATCC BAA-2158] Length = 429 Score = 38.6 bits (89), Expect = 1.3, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85 +ALL P G+ ILD GG + + NV+A+D D ++ E ++ Q Sbjct: 238 CVALLAPQNGEQILDLCAAPGGKTTHILEAAPQANVLAVDVDAQRLTRITENLQRLNMQA 297 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + + D D ++ D S Sbjct: 298 EVKLGDGRTPAAWCGDTLFDRILLDAPCS 326 >gi|292489815|ref|YP_003532705.1| ribosomal RNA small subunit methyltransferase B [Erwinia amylovora CFBP1430] gi|291555252|emb|CBA23523.1| Ribosomal RNA small subunit methyltransferase B [Erwinia amylovora CFBP1430] Length = 456 Score = 38.6 bits (89), Expect = 1.3, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85 +ALL P G+ ILD GG + + NV+A+D D ++ E ++ Q Sbjct: 265 CVALLAPQNGEQILDLCAAPGGKTTHILEAAPQANVLAVDVDAQRLTRITENLQRLNMQA 324 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + + D D ++ D S Sbjct: 325 EVKLGDGRTPAAWCGDTLFDRILLDAPCS 353 >gi|292900857|ref|YP_003540226.1| ribosomal RNA small subunit methyltransferase B [Erwinia amylovora ATCC 49946] gi|291200705|emb|CBJ47838.1| ribosomal RNA small subunit methyltransferase B [Erwinia amylovora ATCC 49946] Length = 429 Score = 38.6 bits (89), Expect = 1.3, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85 +ALL P G+ ILD GG + + NV+A+D D ++ E ++ Q Sbjct: 238 CVALLAPQNGEQILDLCAAPGGKTTHILEAAPQANVLAVDVDAQRLTRITENLQRLNMQA 297 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + + D D ++ D S Sbjct: 298 EVKLGDGRTPAAWCGDTLFDRILLDAPCS 326 >gi|310657947|ref|YP_003935668.1| methyltransferase [Clostridium sticklandii DSM 519] gi|308824725|emb|CBH20763.1| putative methyltransferase [Clostridium sticklandii] Length = 250 Score = 38.6 bits (89), Expect = 1.3, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 25/62 (40%), Gaps = 2/62 (3%) Query: 51 SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFD 110 ++ MG V+ +D + E ++DY+++ L + +L +D ++ Sbjct: 52 TKHLLDMGYEVVGIDISEQMLELAHEKLKDYEDKVILMEQDIRELD--FEIYEIDCILAV 109 Query: 111 LG 112 Sbjct: 110 ND 111 >gi|237729748|ref|ZP_04560229.1| 23S rRNA 5-methyluridine methyltransferase [Citrobacter sp. 30_2] gi|226908354|gb|EEH94272.1| 23S rRNA 5-methyluridine methyltransferase [Citrobacter sp. 30_2] Length = 432 Score = 38.6 bits (89), Expect = 1.3, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 36/90 (40%), Gaps = 3/90 (3%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET-MRDYK 82 ++ + + L+ P +LD G G ++ ++V+ ++ P V G+E + + Sbjct: 274 MVARALEWLDVQPEDRVLDLFCGMGNFTLPLATRAASVVGVEGVPALVEKGRENALNNGL 333 Query: 83 EQFSLFQATFSQ--LQDYVPDKGVDGVVFD 110 + F + + G D V+ D Sbjct: 334 HNVTFFHENLEEDVTRQPWAKNGFDKVLLD 363 >gi|193215887|ref|YP_001997086.1| type 12 methyltransferase [Chloroherpeton thalassium ATCC 35110] gi|193089364|gb|ACF14639.1| Methyltransferase type 12 [Chloroherpeton thalassium ATCC 35110] Length = 273 Score = 38.6 bits (89), Expect = 1.3, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 5/97 (5%) Query: 29 IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLF 88 I+ L K +LD + G G +S K G V+++D ++ E R + Sbjct: 52 ISALKERGVKKVLDVSTGTGFHSVRLLKAGFEVVSVDGSADMLAKAFENARKHGYILRTV 111 Query: 89 QATFSQL-QDYVPDKGVDGVVFDLGVS-SMQIDCGDR 123 A + L +D + D ++ LG S + DR Sbjct: 112 LADWRFLNRDVHGEY--DAIIC-LGNSFTHLFKERDR 145 >gi|148642298|ref|YP_001272811.1| precorrin-6B methylase, CbiT [Methanobrevibacter smithii ATCC 35061] gi|222444531|ref|ZP_03607046.1| hypothetical protein METSMIALI_00143 [Methanobrevibacter smithii DSM 2375] gi|261350930|ref|ZP_05976347.1| putative cobalt-precorrin-6Y C(15)-methyltransferase [Methanobrevibacter smithii DSM 2374] gi|166225722|sp|A5UJR5|CBIT_METS3 RecName: Full=Probable cobalt-precorrin-6Y C(15)-methyltransferase [decarboxylating] gi|148551315|gb|ABQ86443.1| precorrin-6B methylase, CbiT [Methanobrevibacter smithii ATCC 35061] gi|222434096|gb|EEE41261.1| hypothetical protein METSMIALI_00143 [Methanobrevibacter smithii DSM 2375] gi|288860268|gb|EFC92566.1| putative cobalt-precorrin-6Y C(15)-methyltransferase [Methanobrevibacter smithii DSM 2374] Length = 187 Score = 38.6 bits (89), Expect = 1.3, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 36/90 (40%), Gaps = 6/90 (6%) Query: 33 NPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY--KEQFSLFQA 90 P ++D G GG + F + V ++D +P A+S ++ + + + L Sbjct: 30 AVTPNDEVVDVGCGTGGITCEFAQRAKKVTSIDTNPDAISVTKQNLEKFNLGDNVELIND 89 Query: 91 TFSQLQDYVPDKGVDGVVFDLGVSSMQIDC 120 + S + + + +G S +++ Sbjct: 90 SGSNALKNIDNMDI----AVVGGSGRELED 115 >gi|149005767|ref|ZP_01829506.1| hypothetical protein CGSSp18BS74_09380 [Streptococcus pneumoniae SP18-BS74] gi|169834297|ref|YP_001694128.1| SAM-dependent methyltransferase [Streptococcus pneumoniae Hungary19A-6] gi|307126848|ref|YP_003878879.1| SAM-dependent methyltransferase [Streptococcus pneumoniae 670-6B] gi|147762707|gb|EDK69667.1| hypothetical protein CGSSp18BS74_09380 [Streptococcus pneumoniae SP18-BS74] gi|168996799|gb|ACA37411.1| SAM-dependent methyltransferase [Streptococcus pneumoniae Hungary19A-6] gi|301793835|emb|CBW36228.1| putative rRNA methylase [Streptococcus pneumoniae INV104] gi|306483910|gb|ADM90779.1| SAM-dependent methyltransferase [Streptococcus pneumoniae 670-6B] gi|332077081|gb|EGI87543.1| rRNA methylase (SAM-dependent methyltransferase superfamily) [Streptococcus pneumoniae GA17545] gi|332204671|gb|EGJ18736.1| rRNA methylase (SAM-dependent methyltransferase superfamily) [Streptococcus pneumoniae GA47901] Length = 185 Score = 38.6 bits (89), Expect = 1.3, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 10/91 (10%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82 L +V+ V++DAT G G+ + K+ V A D A+ QE + Sbjct: 12 LAEVV----TKED-VVVDATMGN-GHDTLFLAKLAKQVYAFDIQKQALEKTQERLHQADL 65 Query: 83 EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 L L +V G+ F+LG Sbjct: 66 TNAQLILQGHETLDQFVIKAKA-GI-FNLGY 94 >gi|270004358|gb|EFA00806.1| hypothetical protein TcasGA2_TC003693 [Tribolium castaneum] Length = 734 Score = 38.6 bits (89), Expect = 1.3, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 2/60 (3%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96 +I+D GAGG + F VIA+D DP + + Y ++ F L Sbjct: 577 LIVDGFCGAGGNAIQFAFTCKRVIAIDIDPKKIELARNNAEVYGVADKIDFIVGDFFHLA 636 >gi|226224265|ref|YP_002758372.1| hypothetical protein Lm4b_01675 [Listeria monocytogenes Clip81459] gi|225876727|emb|CAS05436.1| unnamed protein product [Listeria monocytogenes serotype 4b str. CLIP 80459] Length = 192 Score = 38.6 bits (89), Expect = 1.3, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 8/86 (9%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK--EQFSL 87 PG ++D T G G+ +V+ D AV + + + Q L Sbjct: 18 VRPGDYVIDTTCGN-GHDTLLLAELVGINGHVLGFDIQQMAVDATKARLENAGVSSQVEL 76 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGV 113 A+ +++ Y + V +F+LG Sbjct: 77 VCASHARIPAY-TSRPVRAAIFNLGY 101 >gi|189235563|ref|XP_969535.2| PREDICTED: similar to prip interacting protein, pimt [Tribolium castaneum] Length = 797 Score = 38.6 bits (89), Expect = 1.3, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 2/60 (3%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96 +I+D GAGG + F VIA+D DP + + Y ++ F L Sbjct: 640 LIVDGFCGAGGNAIQFAFTCKRVIAIDIDPKKIELARNNAEVYGVADKIDFIVGDFFHLA 699 >gi|77405777|ref|ZP_00782862.1| conserved hypothetical protein [Streptococcus agalactiae H36B] gi|77175634|gb|EAO78418.1| conserved hypothetical protein [Streptococcus agalactiae H36B] Length = 188 Score = 38.6 bits (89), Expect = 1.3, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 33/90 (36%), Gaps = 7/90 (7%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-E 83 L +VI + LDAT G G + K V A D A++ + + + Sbjct: 13 LAEVID-----KEAITLDATMGNGNDTVFLAKSSKKVYAFDIQEEAIAKTKAKLTEQGIS 67 Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 L L+ YV + + F+LG Sbjct: 68 NAELILDGHENLEQYVHTPLREAI-FNLGY 96 >gi|301169342|emb|CBW28941.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Haemophilus influenzae 10810] Length = 451 Score = 38.6 bits (89), Expect = 1.3, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 7/91 (7%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88 LL P + ILDA GG + ++ NV+ALD + + +E + +Q + Sbjct: 253 LLEPKNEEWILDACAAPGGKTTHILELAPQANVVALDVESHRLKRVEENLERLNQQAIVV 312 Query: 89 QATFSQLQDYVPDKG-----VDGVVFDLGVS 114 S+ +++ + G D ++ D S Sbjct: 313 CGDASKPDEWLAEIGKSAAKFDRILLDSPCS 343 >gi|53729217|ref|ZP_00348347.1| COG0144: tRNA and rRNA cytosine-C5-methylases [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126209024|ref|YP_001054249.1| ribosomal RNA small subunit methyltransferase B [Actinobacillus pleuropneumoniae L20] gi|165976991|ref|YP_001652584.1| SUN protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190150891|ref|YP_001969416.1| ribosomal RNA small subunit methyltransferase B [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303252922|ref|ZP_07339079.1| SUN protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307248606|ref|ZP_07530620.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307250839|ref|ZP_07532767.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307255464|ref|ZP_07537270.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307257633|ref|ZP_07539392.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307259916|ref|ZP_07541629.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307264244|ref|ZP_07545834.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|126097816|gb|ABN74644.1| ribosomal RNA small subunit methyltransferase B [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165877092|gb|ABY70140.1| SUN protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|189916022|gb|ACE62274.1| ribosomal RNA small subunit methyltransferase B [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302648230|gb|EFL78429.1| SUN protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306854817|gb|EFM87006.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306857089|gb|EFM89217.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306861506|gb|EFM93494.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306863808|gb|EFM95732.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306865944|gb|EFM97819.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306870415|gb|EFN02169.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 432 Score = 38.6 bits (89), Expect = 1.3, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 6/83 (7%) Query: 30 ALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSL 87 ALL G++ILDA GG + + VIALD + + +E + + ++ Sbjct: 240 ALLEAQNGELILDACAAPGGKTTHILEAAPQAKVIALDIEESRLKRVRENLARLGQTATV 299 Query: 88 FQATFSQLQDYVPDKGVDGVVFD 110 S+ +++ DGV+FD Sbjct: 300 ICGDASKPAEWLD----DGVMFD 318 >gi|302541207|ref|ZP_07293549.1| putative methyltransferase [Streptomyces hygroscopicus ATCC 53653] gi|302458825|gb|EFL21918.1| putative methyltransferase [Streptomyces himastatinicus ATCC 53653] Length = 388 Score = 38.6 bits (89), Expect = 1.4, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 33/76 (43%) Query: 29 IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLF 88 +A L P G ++ D G+G + G+ VIA+DRD A + R + Q + Sbjct: 234 LARLGPRVGDLVWDIGAGSGAAAVETAGFGAAVIAVDRDRDACERAETLARRFGVQLQVV 293 Query: 89 QATFSQLQDYVPDKGV 104 + + +P+ V Sbjct: 294 HGAAPDVLEDLPEPDV 309 >gi|89075352|ref|ZP_01161774.1| ribosomal protein L11 methyltransferase [Photobacterium sp. SKA34] gi|89048901|gb|EAR54470.1| ribosomal protein L11 methyltransferase [Photobacterium sp. SKA34] Length = 294 Score = 38.6 bits (89), Expect = 1.4, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 15/89 (16%) Query: 28 VIALLNPAP--GKVILDATFGAGGYSRSF--CKMGS-NVIALDRDPFAVSCGQETMRDYK 82 + L+ GK ++D FG G + K+G+ VI +D DP A+ ++ Sbjct: 149 CLEWLDGQDLTGKTVID--FGCGSGILAIAALKLGAEKVIGIDIDPQAILASRDNAER-- 204 Query: 83 EQFSLFQATFSQLQDYVPDKGVDGVVFDL 111 L+ Y+P G+ D+ Sbjct: 205 ------NGVSDNLELYLPQDQPQGIQADI 227 >gi|307246481|ref|ZP_07528553.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306852544|gb|EFM84777.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus pleuropneumoniae serovar 1 str. 4074] Length = 432 Score = 38.6 bits (89), Expect = 1.4, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 6/83 (7%) Query: 30 ALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSL 87 ALL G++ILDA GG + + VIALD + + +E + + ++ Sbjct: 240 ALLEAQNGELILDACAAPGGKTTHILEAAPQAKVIALDIEESRLKRVRENLARLGQTATV 299 Query: 88 FQATFSQLQDYVPDKGVDGVVFD 110 S+ +++ DGV+FD Sbjct: 300 ICGDASKPAEWLD----DGVMFD 318 >gi|15900553|ref|NP_345157.1| hypothetical protein SP_0652 [Streptococcus pneumoniae TIGR4] gi|111657722|ref|ZP_01408447.1| hypothetical protein SpneT_02001094 [Streptococcus pneumoniae TIGR4] gi|14972124|gb|AAK74797.1| conserved hypothetical protein [Streptococcus pneumoniae TIGR4] Length = 185 Score = 38.6 bits (89), Expect = 1.4, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 10/91 (10%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82 L +V+ V++DAT G G+ + K+ V A D A+ QE + Sbjct: 12 LAEVV----TKED-VVVDATMGN-GHDTLFLAKLAKQVYAFDIQKQALEKTQERLHQADL 65 Query: 83 EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 L L +V G+ F+LG Sbjct: 66 TNAQLILQGHETLDQFVIKAKA-GI-FNLGY 94 >gi|269103647|ref|ZP_06156344.1| ribosomal protein L11 methyltransferase [Photobacterium damselae subsp. damselae CIP 102761] gi|268163545|gb|EEZ42041.1| ribosomal protein L11 methyltransferase [Photobacterium damselae subsp. damselae CIP 102761] Length = 294 Score = 38.6 bits (89), Expect = 1.4, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 15/89 (16%) Query: 28 VIALLNPAP--GKVILDATFGAGGYSRSF--CKMGS-NVIALDRDPFAVSCGQETMRDYK 82 + L+ GK ++D FG G + K+G+ VI +D DP A+ ++ Sbjct: 149 CLEWLDGQDLTGKTVID--FGCGSGILAIAALKLGAAKVIGIDIDPQAILASRDNAER-- 204 Query: 83 EQFSLFQATFSQLQDYVPDKGVDGVVFDL 111 L+ Y+P +G+ D+ Sbjct: 205 ------NGVADNLELYLPQDQPEGIQADV 227 >gi|212225090|ref|YP_002308326.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus onnurineus NA1] gi|212010047|gb|ACJ17429.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus onnurineus NA1] Length = 442 Score = 38.6 bits (89), Expect = 1.4, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 4/81 (4%) Query: 34 PAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQFSLFQ 89 P PG+ ++D GG + + A D D + +E +R E + Sbjct: 248 PEPGETVVDLAAAPGGKTAHMAELMNNTGKIYAFDIDSARIKRMKEVLRRAGVEIAETIK 307 Query: 90 ATFSQLQDYVPDKGVDGVVFD 110 A + + + +K D V+ D Sbjct: 308 ADGRKAPEILGEKIADRVLLD 328 >gi|303249608|ref|ZP_07335814.1| SUN protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307253218|ref|ZP_07535093.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302651541|gb|EFL81691.1| SUN protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306859306|gb|EFM91344.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 432 Score = 38.6 bits (89), Expect = 1.4, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 6/83 (7%) Query: 30 ALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSL 87 ALL G++ILDA GG + + VIALD + + +E + + ++ Sbjct: 240 ALLEAQNGELILDACAAPGGKTTHILEAAPQAKVIALDIEESRLKRVRENLARLGQTATV 299 Query: 88 FQATFSQLQDYVPDKGVDGVVFD 110 S+ +++ DGV+FD Sbjct: 300 ICGDASKPAEWLD----DGVMFD 318 >gi|157145102|ref|YP_001452421.1| hypothetical protein CKO_00833 [Citrobacter koseri ATCC BAA-895] gi|157082307|gb|ABV11985.1| hypothetical protein CKO_00833 [Citrobacter koseri ATCC BAA-895] Length = 214 Score = 38.6 bits (89), Expect = 1.4, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 2/51 (3%) Query: 40 ILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88 ++D G G +S V A+D DP ++ +E + +YK++ F Sbjct: 9 VVDLACGPGSFSMRLLNRFPAIRVTAIDLDPLLLTLAKEALSEYKDRIQFF 59 >gi|329121754|ref|ZP_08250371.1| 23S rRNA (uracil-5-)-methyltransferase [Dialister micraerophilus DSM 19965] gi|327468224|gb|EGF13710.1| 23S rRNA (uracil-5-)-methyltransferase [Dialister micraerophilus DSM 19965] Length = 648 Score = 38.6 bits (89), Expect = 1.4, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 36/84 (42%), Gaps = 2/84 (2%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83 L EK + N + + ++DA G G S + +VI ++ A+ +E + + Sbjct: 293 LYEKALDFANLSGDETVIDAYCGTGTISLYLAQKAKHVIGIEIIKDAIENAKENAK--RN 350 Query: 84 QFSLFQATFSQLQDYVPDKGVDGV 107 + + + + Y+P+ G+ Sbjct: 351 KIKNVEFHAADVAKYLPELAKKGI 374 >gi|154279200|ref|XP_001540413.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1] gi|150412356|gb|EDN07743.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1] Length = 259 Score = 38.6 bits (89), Expect = 1.4, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 45/108 (41%) Query: 1 MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN 60 + K S+ + VP L KV+ LNP P +LD G G ++ SF + Sbjct: 6 VSDKRKDYWSAEAYQESAAFVPKLAHKVLQYLNPQPTDRVLDVGCGDGKFTSSFIPHIKS 65 Query: 61 VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVV 108 V+ +D P +S ++ K F + + L+ + + D VV Sbjct: 66 VLGVDASPSMISSAKQHYGVPKADFRVVDCRYLDLEQDILNGAWDKVV 113 >gi|308807909|ref|XP_003081265.1| Fmu (ISS) [Ostreococcus tauri] gi|116059727|emb|CAL55434.1| Fmu (ISS) [Ostreococcus tauri] Length = 276 Score = 38.6 bits (89), Expect = 1.4, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 7/92 (7%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQETMRDYKEQ- 84 ++A L G+ +LDA G GG + + V D D ++ + + Sbjct: 75 IVAALEAKAGERVLDACAGNGGKTLAIAAEMKFGEVCVFDIDRRRLAHLEANAERAGSRD 134 Query: 85 -FSLFQATFSQLQDYVPDKGVDGVVFDLGVSS 115 + Q T LQD + + D V+ D SS Sbjct: 135 MVTTVQGT--SLQD-LAPQSFDAVLVDAPCSS 163 >gi|262040744|ref|ZP_06013976.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259041910|gb|EEW42949.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 214 Score = 38.6 bits (89), Expect = 1.4, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 2/51 (3%) Query: 40 ILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88 ++D G G +S V A+D DP ++ +E + +YK++ F Sbjct: 9 VVDLACGPGSFSMRLLNRFPAIRVTAIDLDPLLLTLAKEALSEYKDRIQFF 59 >gi|148989023|ref|ZP_01820423.1| rRNA methylase, putative [Streptococcus pneumoniae SP6-BS73] gi|147925520|gb|EDK76597.1| rRNA methylase, putative [Streptococcus pneumoniae SP6-BS73] Length = 185 Score = 38.6 bits (89), Expect = 1.4, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 10/91 (10%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82 L +V+ V++DAT G G+ + K+ V A D A+ QE + Sbjct: 12 LAEVV----TKED-VVVDATMGN-GHDTLFLAKLAKQVYAFDIQKQALKKTQERLHQAGL 65 Query: 83 EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 L L +V G+ F+LG Sbjct: 66 TNAQLILQGHETLDQFVTKAKA-GI-FNLGY 94 >gi|90581289|ref|ZP_01237086.1| ribosomal protein L11 methyltransferase [Vibrio angustum S14] gi|90437528|gb|EAS62722.1| ribosomal protein L11 methyltransferase [Vibrio angustum S14] Length = 294 Score = 38.6 bits (89), Expect = 1.4, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 15/89 (16%) Query: 28 VIALLNPAP--GKVILDATFGAGGYSRSF--CKMGS-NVIALDRDPFAVSCGQETMRDYK 82 + L+ GK ++D FG G + K+G+ VI +D DP A+ ++ Sbjct: 149 CLEWLDSQDLTGKTVID--FGCGSGILAIAALKLGAAKVIGIDIDPQAILASRDNAER-- 204 Query: 83 EQFSLFQATFSQLQDYVPDKGVDGVVFDL 111 L+ Y+P G+ D+ Sbjct: 205 ------NGVSDNLELYLPQDQPQGIQADV 227 >gi|83312817|ref|YP_423081.1| dimethyladenosine transferase [Magnetospirillum magneticum AMB-1] gi|119365030|sp|Q2W0V3|RSMA_MAGSA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|82947658|dbj|BAE52522.1| Dimethyladenosine transferase [Magnetospirillum magneticum AMB-1] Length = 281 Score = 38.6 bits (89), Expect = 1.4, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%) Query: 46 GAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYKEQFSL 87 G GG +R+ G+ VIA++RD A++ E Y + + Sbjct: 54 GPGGLTRALLDAGARQVIAIERDDRAIAIQNEIAEAYPGRLEI 96 >gi|313199965|ref|YP_004038623.1| sun protein [Methylovorus sp. MP688] gi|312439281|gb|ADQ83387.1| sun protein [Methylovorus sp. MP688] Length = 427 Score = 38.6 bits (89), Expect = 1.4, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 38/82 (46%), Gaps = 1/82 (1%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSLFQ 89 LL+ APG +LDA GG + ++ +++A+D D + +E ++ K + L Sbjct: 238 LLDLAPGMRVLDACCAPGGKTGHILELADVDLVAMDSDAGRLRRTEENLQRLKLKAQLVT 297 Query: 90 ATFSQLQDYVPDKGVDGVVFDL 111 + + + D ++ D+ Sbjct: 298 GDAADASGWWDSRPFDRILADV 319 >gi|307288671|ref|ZP_07568652.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0109] gi|306500425|gb|EFM69761.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0109] gi|315165278|gb|EFU09295.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX1302] Length = 456 Score = 38.6 bits (89), Expect = 1.4, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 32/98 (32%), Gaps = 17/98 (17%) Query: 23 VLLEKVIALLNPAPGKVILD-----ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77 VL + I L+ P + ++D T G + K V +D P A+ + Sbjct: 297 VLYNEGIKALDLQPNETVVDAYCGVGTIG-----LNLAKQAHQVRGMDTIPAAIDDARFN 351 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFD 110 + + +D +P D +V D Sbjct: 352 AKRLG--VTNTHYAVGTAEDLLPKWFKEGFKPDAIVVD 387 >gi|291532848|emb|CBL05961.1| Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Megamonas hypermegale ART12/1] Length = 196 Score = 38.6 bits (89), Expect = 1.4, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 11/89 (12%) Query: 35 APGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKE-------Q 84 K+I+DAT G G + + + + A D A+ + + K+ Sbjct: 20 NEAKIIVDATAGNGNDTLFLAQNTLNNAQIYAFDIQKEAIENTKALLIKNKDNINLPLEN 79 Query: 85 FSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 S + + +Y+ +D +F+LG Sbjct: 80 ISFIHDSHEHIDNYI-QTKIDIAIFNLGY 107 >gi|196009009|ref|XP_002114370.1| hypothetical protein TRIADDRAFT_58107 [Trichoplax adhaerens] gi|190583389|gb|EDV23460.1| hypothetical protein TRIADDRAFT_58107 [Trichoplax adhaerens] Length = 725 Score = 38.6 bits (89), Expect = 1.4, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 2/68 (2%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96 +I+DA G GG F K +VIA+D DP + C + + Y + F QL Sbjct: 564 IIIDAFCGVGGNCIQFAKTCDHVIAIDIDPNKIKCARHNAKIYNVEHKIEFIVGDFLQLA 623 Query: 97 DYVPDKGV 104 + V Sbjct: 624 PSLKADVV 631 >gi|134302402|ref|YP_001122372.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis subsp. tularensis WY96-3418] gi|134050179|gb|ABO47250.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Francisella tularensis subsp. tularensis WY96-3418] Length = 449 Score = 38.6 bits (89), Expect = 1.4, Method: Composition-based stats. Identities = 25/162 (15%), Positives = 55/162 (33%), Gaps = 24/162 (14%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83 ++++ I LL+ + I+D G G ++ + VI ++ + V +ET + Sbjct: 289 MIKRAIELLDISENDSIIDLFCGLGNFTLPISQHAKTVIGVEGELTMVKRAKETADN--N 346 Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGIS 143 + + L + S + F + K M + Sbjct: 347 NITNVNFYAANLFE-----------------SFEDKEWFNNFEYNK-----MLLDPPRAG 384 Query: 144 ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 A +V N ++ RI+ + + +R A +V + Sbjct: 385 AQEVCNNIEKFNVKRIVYVSCDTAALARDAGILVNTKGYKLI 426 >gi|146312878|ref|YP_001177952.1| 23S rRNA 5-methyluridine methyltransferase [Enterobacter sp. 638] gi|226725379|sp|A4WDX1|RUMA_ENT38 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|145319754|gb|ABP61901.1| 23S rRNA m(5)U-1939 methyltransferase [Enterobacter sp. 638] Length = 431 Score = 38.6 bits (89), Expect = 1.5, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 3/90 (3%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETM-RDYK 82 ++ K I L+ P +LD G G ++ + ++V+ ++ V GQ+ + Sbjct: 274 MVAKAIEWLDVQPDDRVLDLFCGMGNFTLPLAQRAASVVGVEGVNALVEKGQQNAHHNAL 333 Query: 83 EQFSLFQATFSQ--LQDYVPDKGVDGVVFD 110 + + F + Q G D V+ D Sbjct: 334 DNVTFFHENLEEDVTQQPWAQHGFDKVLLD 363 >gi|30684861|ref|NP_683312.2| methylase-related [Arabidopsis thaliana] gi|26983794|gb|AAN86149.1| unknown protein [Arabidopsis thaliana] gi|332191331|gb|AEE29452.1| S-adenosyl-L-methionine-dependent methyltransferase domain-containing protein [Arabidopsis thaliana] Length = 274 Score = 38.6 bits (89), Expect = 1.5, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 37/94 (39%), Gaps = 14/94 (14%) Query: 34 PAPGKVILDATFGAGGYSRSFCKM--------GSNVIALDRDPFAVSCGQETMRDY---- 81 G ++DAT G G + + KM G V A+D A+ + Sbjct: 95 IQKGDTVIDATCGNGNDTLAMLKMVMHDSVGCGGYVYAMDIQKDAIESTSSLLDQAVGSK 154 Query: 82 -KEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGV 113 KE LF S++ + VP+ V V F+LG Sbjct: 155 EKECVKLFNLCHSKMGEIVPENARVRMVAFNLGY 188 >gi|319639269|ref|ZP_07994020.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Neisseria mucosa C102] gi|317399453|gb|EFV80123.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Neisseria mucosa C102] Length = 441 Score = 38.6 bits (89), Expect = 1.5, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 4/92 (4%) Query: 23 VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQE--TMRD 80 V++ + + LLNP G+ I D G G +S K G++V+ ++ + V +E + Sbjct: 281 VMVARAVRLLNPQKGERIADLFCGLGNFSLPLAKSGASVVGIEGADYLVDRARENARLNR 340 Query: 81 YKEQFSL-FQATFSQLQDYVPDKG-VDGVVFD 110 E + F + V G D ++ D Sbjct: 341 CAENMTFSVADLFDTDEKTVESWGKFDKMLLD 372 >gi|312878905|ref|ZP_07738705.1| precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit [Aminomonas paucivorans DSM 12260] gi|310782196|gb|EFQ22594.1| precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit [Aminomonas paucivorans DSM 12260] Length = 429 Score = 38.6 bits (89), Expect = 1.5, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 4/82 (4%) Query: 28 VIALLNPAPGKVILD-ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRD--YKEQ 84 V+ALL P G IL+ T G GG + + GS V++L+R+P A + +Q Sbjct: 265 VLALLAPLEGSRILEIGT-GTGGVTAELARAGSRVVSLERNPEARDLAARHLERLGLGDQ 323 Query: 85 FSLFQATFSQLQDYVPDKGVDG 106 L + + + + G Sbjct: 324 VRLVAGSAPEALVDLEEPPFQG 345 >gi|94497692|ref|ZP_01304260.1| dimethyladenosine transferase [Sphingomonas sp. SKA58] gi|94422909|gb|EAT07942.1| dimethyladenosine transferase [Sphingomonas sp. SKA58] Length = 244 Score = 38.6 bits (89), Expect = 1.5, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 26/66 (39%) Query: 46 GAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD 105 G GG +R+ + G ++A++RD + E + Q + Q+ Sbjct: 23 GPGGLTRAILRAGGRLVAVERDDRCLPALAELADAFPGQLKVIAGDAMQIDAQAEAGDGA 82 Query: 106 GVVFDL 111 ++ +L Sbjct: 83 HIIANL 88 >gi|20094975|ref|NP_614822.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19] gi|19888229|gb|AAM02752.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19] Length = 450 Score = 38.6 bits (89), Expect = 1.5, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 39/105 (37%), Gaps = 15/105 (14%) Query: 30 ALLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ-- 84 A+LNP PG+V++D GG + ++A+D D E +R+ E+ Sbjct: 252 AVLNPKPGEVVVDLCAAPGGKTTHMAQLMGGEGKIVAIDVDEVR----MERLREIAERMG 307 Query: 85 ----FSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQI--DCGDR 123 + + + + D V+ D S+ +R Sbjct: 308 VLDCIETHLMDGREAPEKLGREFADAVLVDPPCSADGTIPKNPER 352 >gi|307704007|ref|ZP_07640940.1| RNA methyltransferase, TrmA family [Streptococcus mitis SK597] gi|307622431|gb|EFO01435.1| RNA methyltransferase, TrmA family [Streptococcus mitis SK597] Length = 451 Score = 38.6 bits (89), Expect = 1.5, Method: Composition-based stats. Identities = 15/93 (16%), Positives = 30/93 (32%), Gaps = 12/93 (12%) Query: 23 VLLEKVIALLNPAPGKVILD-----ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77 VL + + L+ ++D T G +F K + +D P A+ + Sbjct: 291 VLYNEAVKALDVNKEDHLIDAYCGVGTIGF-----AFAKKVKTLRGMDIIPEAIEDAKRN 345 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFD 110 + F ++ +P +G D Sbjct: 346 AKRMG--FDNIHYEAGTAEEIIPRWYKEGYRAD 376 >gi|70991803|ref|XP_750750.1| RNA methylase family protein [Aspergillus fumigatus Af293] gi|66848383|gb|EAL88712.1| RNA methylase family protein, putative [Aspergillus fumigatus Af293] gi|159124312|gb|EDP49430.1| RNA methylase family protein, putative [Aspergillus fumigatus A1163] Length = 238 Score = 38.6 bits (89), Expect = 1.5, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 47/103 (45%), Gaps = 13/103 (12%) Query: 39 VILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMRDYK--EQFSLFQA-TFS 93 +++DA GAGG + +F + G V A++++P + C + + Y ++ + F+ FS Sbjct: 77 ILVDAFAGAGGNTIAFARTGKWKRVYAIEKNPAVLQCAKHNAQVYGVADKITWFEGDCFS 136 Query: 94 QLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136 L++ + + V+F S ++ ++R Sbjct: 137 ILKNQLKELAPYSVIFA----SPPWGGPG----YRSDEVFNLR 171 >gi|226310774|ref|YP_002770668.1| hypothetical protein BBR47_11870 [Brevibacillus brevis NBRC 100599] gi|226093722|dbj|BAH42164.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 260 Score = 38.6 bits (89), Expect = 1.5, Method: Composition-based stats. Identities = 29/192 (15%), Positives = 59/192 (30%), Gaps = 31/192 (16%) Query: 31 LLNPAPGKVILD-ATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLF 88 LNP+P V LD AT GG+ +++ +V A D ++ + ++ + Sbjct: 40 WLNPSPEWVFLDVAT--GGGHLTKAIAPHVGHVFATDLTQPMLAAARNHLKSHTSNVFYV 97 Query: 89 QATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP----------LDMRMS 138 A L G +++ + SF K L ++ Sbjct: 98 VADAEALPFLSESFDAVG----CRIAAHHFPNPE---SFVKEVARVLKPGGKFVLIDNIA 150 Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHA-IVK-----RRQSAPFQT----T 188 VN + + I +V+ R+++ P+ T T Sbjct: 151 AEDEKLDQFVNTLEKLRDHSHVRSYSRSEWVRWIEQEGLVESHSRIRKKTFPYATWVRRT 210 Query: 189 QDLSSLIQKTVY 200 + +++ Sbjct: 211 TETEEQVEQVTA 222 >gi|332968678|gb|EGK07730.1| methyltransferase [Desmospora sp. 8437] Length = 250 Score = 38.6 bits (89), Expect = 1.6, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 29/84 (34%), Gaps = 4/84 (4%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84 +E L+ G+ +LD G G +S + +G V +D + +E R + Sbjct: 36 VEAAAEWLDLKKGESVLDLCCGTGRHSIALDDLGLKVTGIDLSSVLLQVARENSR--GRR 93 Query: 85 FSLFQATFSQLQDYVPDKGVDGVV 108 L + D V+ Sbjct: 94 IEYVHGDMRDLP--FTEGSFDAVL 115 >gi|52425949|ref|YP_089086.1| SmtA protein [Mannheimia succiniciproducens MBEL55E] gi|52308001|gb|AAU38501.1| SmtA protein [Mannheimia succiniciproducens MBEL55E] Length = 255 Score = 38.6 bits (89), Expect = 1.6, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 41/98 (41%), Gaps = 16/98 (16%) Query: 25 LEKVIA---LLNPAP---GKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCG--- 74 L +++ +L+ P GK +LD G GG+ + + ++G+ V+ +D + Sbjct: 25 LNEIVEKPTMLSLLPDITGKTLLDMGCGTGGHLQMYLRLGAKRVVGIDLSASMLKQAEID 84 Query: 75 -----QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV 107 + ++ FSL QL +P+ D + Sbjct: 85 LGKLCENRLQFSSGSFSLHHLPMEQLDQ-LPEAQFDVI 121 >gi|316933703|ref|YP_004108685.1| dimethyladenosine transferase [Rhodopseudomonas palustris DX-1] gi|315601417|gb|ADU43952.1| dimethyladenosine transferase [Rhodopseudomonas palustris DX-1] Length = 287 Score = 38.2 bits (88), Expect = 1.6, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 1/52 (1%) Query: 46 GAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ 96 G GG +R+ G+ VIA++RD A+ +E Y + + + Sbjct: 57 GPGGLTRALLATGAKRVIAIERDERALGALEEIAAHYPGRLEIVSGDAMEFD 108 >gi|169610059|ref|XP_001798448.1| hypothetical protein SNOG_08123 [Phaeosphaeria nodorum SN15] gi|111063279|gb|EAT84399.1| hypothetical protein SNOG_08123 [Phaeosphaeria nodorum SN15] Length = 222 Score = 38.2 bits (88), Expect = 1.6, Method: Composition-based stats. Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 7/81 (8%) Query: 31 LLNPAPGKVILDATFGAG-GY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFS 86 LL PG +LDA GAG GY + + + G NV A+D P V+ ++ +R Y ++ Sbjct: 68 LLGLKPGDRVLDA--GAGSGYVAMTMARHGLNVQAIDITPHHVANAKKNVRGYGLQDRIK 125 Query: 87 LFQATFSQLQDYVPDKGVDGV 107 + A + L + PD DG+ Sbjct: 126 VDYANYHNLSQF-PDASFDGI 145 >gi|238027991|ref|YP_002912222.1| hypothetical protein bglu_1g24400 [Burkholderia glumae BGR1] gi|237877185|gb|ACR29518.1| Hypothetical protein bglu_1g24400 [Burkholderia glumae BGR1] Length = 186 Score = 38.2 bits (88), Expect = 1.6, Method: Composition-based stats. Identities = 18/40 (45%), Positives = 24/40 (60%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSC 73 APG +LD G G ++R F G V+ALDRDP A++ Sbjct: 16 VAPGGAVLDVAAGQGRHARWFASRGHPVLALDRDPAALAT 55 >gi|254490995|ref|ZP_05104176.1| ribosomal RNA small subunit methyltransferase B [Methylophaga thiooxidans DMS010] gi|224463508|gb|EEF79776.1| ribosomal RNA small subunit methyltransferase B [Methylophaga thiooxydans DMS010] Length = 406 Score = 38.2 bits (88), Expect = 1.6, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 2/90 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQF 85 V+ +L+ P + ILDA GG S + + ++ALD + ++ + + Sbjct: 211 VVKMLDIQPDQHILDACAAPGGKSCHILEQHPDNTLVALDISAERLKQIEQNLSRLQLGA 270 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVSS 115 L A S + + D ++ D S Sbjct: 271 QLKAADASDTDAWWDGELFDRILIDAPCSG 300 >gi|150402394|ref|YP_001329688.1| precorrin-6Y C5,15-methyltransferase subunit CbiT [Methanococcus maripaludis C7] gi|166225721|sp|A6VGG1|CBIT_METM7 RecName: Full=Probable cobalt-precorrin-6Y C(15)-methyltransferase [decarboxylating] gi|150033424|gb|ABR65537.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit [Methanococcus maripaludis C7] Length = 181 Score = 38.2 bits (88), Expect = 1.6, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 6/93 (6%) Query: 21 VPVLLEKV----IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQE 76 VP+ E++ I LN P ++LD G+GG S K V A+D A + Sbjct: 13 VPITKEEIRAVSIGKLNLNPEDIVLDIGCGSGGMSVEISKRSKFVYAIDNSEDAKNTTVT 72 Query: 77 TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVF 109 ++ +K + +D + + + V Sbjct: 73 NLKKFK--IENCEVFLGDAKDLISEFDFNKVFI 103 >gi|311696633|gb|ADP99506.1| Fmu, rRNA SAM-dependent methyltransferase [marine bacterium HP15] Length = 426 Score = 38.2 bits (88), Expect = 1.7, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 3/90 (3%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMRDYKEQ 84 L++ APG+ +LDA GG + + + + V+A+D + QE + Sbjct: 228 CTTLMDLAPGQRVLDACAAPGGKTCAILESCGELAEVVAIDESADRLPRVQENLDRLDLN 287 Query: 85 FSLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 +L QA + + + D ++ D+ S Sbjct: 288 ATLKQADAAATDQWWDGEAFDRILLDVPCS 317 >gi|293374332|ref|ZP_06620659.1| conserved hypothetical protein [Turicibacter sanguinis PC909] gi|292646995|gb|EFF64978.1| conserved hypothetical protein [Turicibacter sanguinis PC909] Length = 187 Score = 38.2 bits (88), Expect = 1.7, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 10/94 (10%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRD 80 LLEK+++ G+ ++DAT G G + K+ V + D A+ + + + Sbjct: 15 LLEKIVSA-----GETVIDATAGNGYDTLFLAKLVGESGKVFSFDVQQEAIDSTKAKLEE 69 Query: 81 YK-EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 K E SL + +YV ++ + +F+LG Sbjct: 70 AKLENVSLILDGHQHVLNYVTEE-ISAAIFNLGY 102 >gi|290579949|ref|YP_003484341.1| hypothetical protein SmuNN2025_0423 [Streptococcus mutans NN2025] gi|254996848|dbj|BAH87449.1| hypothetical protein [Streptococcus mutans NN2025] Length = 181 Score = 38.2 bits (88), Expect = 1.7, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 7/90 (7%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-E 83 L +V+ + +DAT G G + + V A D A+ +E + + Sbjct: 13 LSQVLD-----KNSIAIDATMGNGNDTVFLSHLAKKVYAFDVQEQALIKTREKLENLGFN 67 Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 L + YV D + +F+LG Sbjct: 68 NVQLILDGHQTIDKYV-DGPIRAAIFNLGY 96 >gi|57169000|ref|ZP_00368129.1| probable DNA methylase Cj1461 [Campylobacter coli RM2228] gi|57019666|gb|EAL56355.1| probable DNA methylase Cj1461 [Campylobacter coli RM2228] Length = 229 Score = 38.2 bits (88), Expect = 1.7, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 25/77 (32%), Gaps = 6/77 (7%) Query: 51 SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQAT-FSQLQDYVPDKGVDGVVF 109 + + A++ D A E ++ + A F L + D D +++ Sbjct: 97 AEALSNYALKAYAIELDLNAYKIALENAKNIDTNLKVIHANTFEILPKLIEDSKEDIILY 156 Query: 110 DLGVSSMQIDCGDRGFS 126 D + GFS Sbjct: 157 L----DPPFDIRE-GFS 168 >gi|225017534|ref|ZP_03706726.1| hypothetical protein CLOSTMETH_01461 [Clostridium methylpentosum DSM 5476] gi|224949684|gb|EEG30893.1| hypothetical protein CLOSTMETH_01461 [Clostridium methylpentosum DSM 5476] Length = 184 Score = 38.2 bits (88), Expect = 1.7, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 4/80 (5%) Query: 37 GKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETM-RDYKEQFSLFQATFS 93 V+ D T G G + + V A D AV + + ++ + L + S Sbjct: 19 DGVVGDFTMGNGSDTLFLAQHCCKGKVYAFDIQQQAVDNTRSRLEANWVDNAELILDSHS 78 Query: 94 QLQDYVPDKGVDGVVFDLGV 113 L Y+ ++ +DG +F+LG Sbjct: 79 NLDQYIREE-LDGGMFNLGY 97 >gi|312138483|ref|YP_004005819.1| sam dependent methyltransferase [Rhodococcus equi 103S] gi|311887822|emb|CBH47134.1| putative SAM dependent methyltransferase [Rhodococcus equi 103S] Length = 237 Score = 38.2 bits (88), Expect = 1.7, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 26/78 (33%), Gaps = 3/78 (3%) Query: 46 GAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD 105 G G +S K G +V A+D P A+ + + + L YV D Sbjct: 87 GTGDHSIELAKRGWSVTAVDSVPLAIERARAKLPVAGADVRFVLGDVTHLPAYVDDHYT- 145 Query: 106 GVVFDLGVSSMQIDCGDR 123 D+G + R Sbjct: 146 -FALDVGC-FHGLTDECR 161 >gi|251788451|ref|YP_003003172.1| 23S rRNA 5-methyluridine methyltransferase [Dickeya zeae Ech1591] gi|247537072|gb|ACT05693.1| RNA methyltransferase, TrmA family [Dickeya zeae Ech1591] Length = 444 Score = 38.2 bits (88), Expect = 1.7, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 3/90 (3%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82 ++E+ +A L+P P +LD G G ++ + V+ ++ V G+E Sbjct: 280 MVEQALAWLDPQPQDRVLDLFCGMGNFTLPLAERAGRVVGVEGVAALVDKGRENATRNGL 339 Query: 83 EQFSLFQATFSQ--LQDYVPDKGVDGVVFD 110 Q + + + + G D V+ D Sbjct: 340 TQVTFYHHNLEEDVTRQPWASMGFDKVLLD 369 >gi|94310012|ref|YP_583222.1| methyltransferase type 12 [Cupriavidus metallidurans CH34] gi|93353864|gb|ABF07953.1| conserved hypothetical protein [Cupriavidus metallidurans CH34] Length = 191 Score = 38.2 bits (88), Expect = 1.7, Method: Composition-based stats. Identities = 14/40 (35%), Positives = 21/40 (52%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSC 73 PG +LD G+G +S G V+A+DRD A++ Sbjct: 22 IRPGGRVLDLACGSGRHSAWLAAQGFAVLAVDRDAEAIAA 61 >gi|254172289|ref|ZP_04878965.1| tRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family [Thermococcus sp. AM4] gi|214034185|gb|EEB75011.1| tRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family [Thermococcus sp. AM4] Length = 443 Score = 38.2 bits (88), Expect = 1.7, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 33/83 (39%), Gaps = 4/83 (4%) Query: 32 LNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQFSL 87 L+P PG+ ++D GG + + A D D + ++ +R E + Sbjct: 246 LSPEPGETVVDLAAAPGGKTAHMAELMGNEGKIYAFDIDSERIKRMRQILRWAGVEIAEV 305 Query: 88 FQATFSQLQDYVPDKGVDGVVFD 110 + + + + ++ D V+ D Sbjct: 306 RKLDGRKAPEVLGEEIADRVLLD 328 >gi|170743207|ref|YP_001771862.1| dimethyladenosine transferase [Methylobacterium sp. 4-46] gi|168197481|gb|ACA19428.1| dimethyladenosine transferase [Methylobacterium sp. 4-46] Length = 285 Score = 38.2 bits (88), Expect = 1.7, Method: Composition-based stats. Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%) Query: 46 GAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSLFQA 90 G GG +R+ G+ V+A++RD A+ E Y + ++ QA Sbjct: 61 GPGGLTRALLAEGAARVVAIERDERALPALAEIAAHYPGRLTVVQA 106 >gi|119469769|ref|XP_001257977.1| RNA methylase family protein, putative [Neosartorya fischeri NRRL 181] gi|119406129|gb|EAW16080.1| RNA methylase family protein, putative [Neosartorya fischeri NRRL 181] Length = 238 Score = 38.2 bits (88), Expect = 1.7, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 5/82 (6%) Query: 33 NPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMRDYK--EQFSLF 88 PA +++DA GAGG + +F + G V A++++P + C + + Y ++ + F Sbjct: 71 APAGRSILVDAFAGAGGNTIAFARTGKWKRVYAIEKNPAVLQCAKHNAQVYGVADKITWF 130 Query: 89 QA-TFSQLQDYVPDKGVDGVVF 109 + FS L+D + + V+F Sbjct: 131 EGDCFSILKDQLKELAPYSVIF 152 >gi|294506884|ref|YP_003570942.1| Ribosomal RNA small subunit methyltransferase B [Salinibacter ruber M8] gi|294343212|emb|CBH23990.1| Ribosomal RNA small subunit methyltransferase B [Salinibacter ruber M8] Length = 448 Score = 38.2 bits (88), Expect = 1.7, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 3/49 (6%) Query: 28 VIALLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSC 73 V+ LL+P PG+ ++D GG ++ + + + A+DRD + Sbjct: 245 VVQLLDPQPGETLIDGCAAPGGKAMHAAARMEGTGTIYAVDRDEQRLER 293 >gi|89070427|ref|ZP_01157729.1| Protein-L-isoaspartate carboxylmethyltransferase [Oceanicola granulosus HTCC2516] gi|89043993|gb|EAR50170.1| Protein-L-isoaspartate carboxylmethyltransferase [Oceanicola granulosus HTCC2516] Length = 217 Score = 38.2 bits (88), Expect = 1.8, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 31/70 (44%), Gaps = 5/70 (7%) Query: 28 VIALLNPAPGKVILDATFGAG-GYSRSFCKMGSNVIALDRDPFAV-SCGQETMRDYK-EQ 84 ++ L+ P + +LD G G GYS + ++ +A D A Q+T+ + + Sbjct: 70 MLDALDIQPHESVLD--LGCGLGYSTAVLARLADFVAGVEDDEARAEEAQQTLSEQGVDN 127 Query: 85 FSLFQATFSQ 94 ++ ++ Sbjct: 128 AAVIHGALAE 137 >gi|305432253|ref|ZP_07401416.1| probable site-specific DNA methyltransferase [Campylobacter coli JV20] gi|304444601|gb|EFM37251.1| probable site-specific DNA methyltransferase [Campylobacter coli JV20] Length = 229 Score = 38.2 bits (88), Expect = 1.8, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 25/77 (32%), Gaps = 6/77 (7%) Query: 51 SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQAT-FSQLQDYVPDKGVDGVVF 109 + + A++ D A E ++ + A F L + D D +++ Sbjct: 97 AEALSNYALKAYAIELDLNAYKIALENAKNIDTNLKVIHANTFEILPKLIEDSKEDIILY 156 Query: 110 DLGVSSMQIDCGDRGFS 126 D + GFS Sbjct: 157 L----DPPFDIRE-GFS 168 >gi|254465054|ref|ZP_05078465.1| UbiE/COQ5 methyltransferase [Rhodobacterales bacterium Y4I] gi|206685962|gb|EDZ46444.1| UbiE/COQ5 methyltransferase [Rhodobacterales bacterium Y4I] Length = 265 Score = 38.2 bits (88), Expect = 1.8, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 4/87 (4%) Query: 28 VIALLNPAPGKVILD-ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFS 86 + L P PG+ ILD T G G +R G++V +D P + + + + Sbjct: 34 TVQALWPRPGERILDIGT-GTGWAARLAAWRGASVTGVDIAPGMLEAAETLSAGFDPRPV 92 Query: 87 LFQATFSQLQDYVPDKGVDGVVFDLGV 113 QA +L + DGV+ GV Sbjct: 93 FQQAAAEELP--FDNGSFDGVISTYGV 117 >gi|52220921|ref|YP_086790.1| S-adenosylmethionine-dependent methyltransferase [Agrobacterium tumefaciens] gi|222112738|ref|YP_002559291.1| S-adenosylmethionine-dependent methyltransferase protein [Agrobacterium radiobacter K84] gi|41393803|gb|AAS02151.1| probable S-adenosylmethionine-dependent methyltransferase [Agrobacterium tumefaciens] gi|221728515|gb|ACM31487.1| S-adenosylmethionine-dependent methyltransferase protein [Agrobacterium radiobacter K84] Length = 249 Score = 38.2 bits (88), Expect = 1.8, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 4/60 (6%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83 LL++ P +LDA G G + G+ V+ +DR P +S E ++ Sbjct: 35 LLDEC----GIKPRTKVLDACCGTGRLTELLSTSGATVVGIDRSPEMLSVATERLKGKPN 90 >gi|253745520|gb|EET01398.1| Dimethyladenosine transferase [Giardia intestinalis ATCC 50581] Length = 319 Score = 38.2 bits (88), Expect = 1.8, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 27/49 (55%), Gaps = 3/49 (6%) Query: 51 SRSFCKMGSNVIALDRDPFAVSCGQETMR---DYKEQFSLFQATFSQLQ 96 + + + +VIA++ DP VS ++ + +Y+ +F++ F+++ Sbjct: 47 TLALLEKAKHVIAIEIDPRMVSELKKRIAAIPEYRGKFTIIHKDFTKMP 95 >gi|254775210|ref|ZP_05216726.1| hypothetical protein MaviaA2_11141 [Mycobacterium avium subsp. avium ATCC 25291] Length = 247 Score = 38.2 bits (88), Expect = 1.8, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 35/97 (36%), Gaps = 9/97 (9%) Query: 27 KVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFS 86 + + L P V +D G G ++R+ ++VIA++ P A + Sbjct: 20 EAVDWLMPPDCGVAVDVGAGTGLFTRALAGRAAHVIAVE--PDARMRAV--LAHRSPAVR 75 Query: 87 LFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDR 123 + + + +PD+ D V S+ R Sbjct: 76 VLEGRGEAIP--LPDRCADAVFV---SSAWHWMDPQR 107 >gi|206560530|ref|YP_002231295.1| putative methyltransferase [Burkholderia cenocepacia J2315] gi|198036572|emb|CAR52469.1| putative methyltransferase [Burkholderia cenocepacia J2315] Length = 200 Score = 38.2 bits (88), Expect = 1.8, Method: Composition-based stats. Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 1/42 (2%) Query: 32 LNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSC 73 L PA G +LD G G ++R F G V+ALDRDP A++ Sbjct: 28 LVPA-GGAVLDVAAGGGRHARWFASRGHPVVALDRDPAALAA 68 >gi|14591725|ref|NP_143813.1| nucleolar protein [Pyrococcus horikoshii OT3] gi|3258435|dbj|BAA31118.1| 389aa long hypothetical nucleolar protein [Pyrococcus horikoshii OT3] Length = 389 Score = 38.2 bits (88), Expect = 1.8, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 11/91 (12%) Query: 32 LNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQFSL 87 L P VI+D GG + + +IA+D+ + +E ++ + L Sbjct: 197 LEPKEDDVIIDMAAAPGGKTTHIAQLLENKGEIIAIDKSKNRLRKMEENIKRLGVKNVKL 256 Query: 88 FQATFSQLQDYVPDKGVDGVVFD-----LGV 113 Q +L D D ++ D LGV Sbjct: 257 VQMDARKLPDL--GIKADKILLDAPCTALGV 285 >gi|313245968|emb|CBY34942.1| unnamed protein product [Oikopleura dioica] Length = 394 Score = 38.2 bits (88), Expect = 1.8, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 2/60 (3%) Query: 38 KVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQL 95 ++I+D G GG + F VIA+D DP + + Y ++ + ++ Sbjct: 192 ELIVDGFCGVGGNAIQFAFTCERVIAIDIDPEKIEMAKHNAAIYGVEDRIEFIVGDYFKI 251 >gi|313224250|emb|CBY20039.1| unnamed protein product [Oikopleura dioica] Length = 427 Score = 38.2 bits (88), Expect = 1.8, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 2/60 (3%) Query: 38 KVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQL 95 ++I+D G GG + F VIA+D DP + + Y ++ + ++ Sbjct: 225 ELIVDGFCGVGGNAIQFAFTCERVIAIDIDPEKIEMAKHNAAIYGVEDRIEFIVGDYFKI 284 >gi|194705956|gb|ACF87062.1| unknown [Zea mays] gi|195638364|gb|ACG38650.1| S-adenosylmethionine-dependent methyltransferase [Zea mays] Length = 211 Score = 38.2 bits (88), Expect = 1.8, Method: Composition-based stats. Identities = 39/207 (18%), Positives = 67/207 (32%), Gaps = 34/207 (16%) Query: 14 HHTIGDHV-PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69 + G H+ +L N GKV+ D FG G + + +V+ +D DP Sbjct: 25 QYATGPHIASRMLYMAENSFNDITGKVVAD--FGCGCGTLAVASALLDAEHVLGIDIDPQ 82 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 ++ QE D + L + L + VD VV F ++ Sbjct: 83 SLELAQENAADLELDIDLVWSDIKNL--NLKGVHVDTVVM----------NPP--FGTRR 128 Query: 130 SGPLDMR-MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188 +G DM +S + AS V + + + A + + R + P Sbjct: 129 NGA-DMEFLSMALQVASQAVYSLHKTSTREHIKKAALRGFNAISAEVLCELRYNLP---- 183 Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQ 215 +T K I A ++ Sbjct: 184 --------RTYKLHKKKEIDIAVDLWR 202 >gi|256060807|ref|ZP_05450967.1| dimethyladenosine transferase [Brucella neotomae 5K33] gi|261324799|ref|ZP_05963996.1| dimethyladenosine transferase [Brucella neotomae 5K33] gi|261300779|gb|EEY04276.1| dimethyladenosine transferase [Brucella neotomae 5K33] Length = 276 Score = 38.2 bits (88), Expect = 1.9, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 19/45 (42%) Query: 46 GAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQA 90 G GG +R+ G+ V A++RD + E Y + + Sbjct: 56 GPGGLTRALLAQGAYVTAIERDDRCLEALTEIAAHYPGRLRIIAG 100 >gi|238920899|ref|YP_002934414.1| 23S rRNA 5-methyluridine methyltransferase [Edwardsiella ictaluri 93-146] gi|259495630|sp|C5B8X6|RUMA_EDWI9 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|238870468|gb|ACR70179.1| 23S rRNA (uracil-5-)-methyltransferase RumA, putative [Edwardsiella ictaluri 93-146] Length = 438 Score = 38.2 bits (88), Expect = 1.9, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 36/90 (40%), Gaps = 3/90 (3%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82 ++ + +A L+ + +LD G G ++ ++ V+ ++ P V+ Q R+ Sbjct: 278 MVGQALAWLDVRADERVLDLFCGMGNFTLPLARLALRVVGVEGVPGLVATAQNNARNNGL 337 Query: 83 EQFSLFQATFSQ--LQDYVPDKGVDGVVFD 110 F + + +G D ++ D Sbjct: 338 SNVEFFHQNLEEDVTRQAWASQGFDKILLD 367 >gi|118463304|ref|YP_881917.1| hypothetical protein MAV_2728 [Mycobacterium avium 104] gi|118164591|gb|ABK65488.1| conserved hypothetical protein [Mycobacterium avium 104] Length = 255 Score = 38.2 bits (88), Expect = 1.9, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 35/97 (36%), Gaps = 9/97 (9%) Query: 27 KVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFS 86 + + L P V +D G G ++R+ ++VIA++ P A + Sbjct: 28 EAVDWLMPPDCGVAVDVGAGTGLFTRALAGRAAHVIAVE--PDARMRAV--LAHRSPAVR 83 Query: 87 LFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDR 123 + + + +PD+ D V S+ R Sbjct: 84 VLEGRGEAIP--LPDRCADAVFV---SSAWHWMDPQR 115 >gi|118431301|ref|NP_147666.2| protein-L-isoaspartate O-methyltransferase [Aeropyrum pernix K1] gi|150421626|sp|Q9YDA1|PIMT_AERPE RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName: Full=L-isoaspartyl protein carboxyl methyltransferase; AltName: Full=Protein L-isoaspartyl methyltransferase; AltName: Full=Protein-beta-aspartate methyltransferase; Short=PIMT gi|116062623|dbj|BAA79996.2| protein-L-isoaspartate O-methyltransferase [Aeropyrum pernix K1] Length = 260 Score = 38.2 bits (88), Expect = 1.9, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 7/63 (11%) Query: 27 KVIALLNPAPGKVILDATFGAG-GYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDY 81 +++ LL+P PG+ +LD GAG GY + G V A++R P +E + Sbjct: 99 RMLQLLDPQPGEKVLD--VGAGSGYQSALLAELVTPGGRVYAVERIPELAEYARENLEKT 156 Query: 82 KEQ 84 + Sbjct: 157 GYR 159 >gi|41407788|ref|NP_960624.1| hypothetical protein MAP1690c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41396142|gb|AAS04007.1| hypothetical protein MAP_1690c [Mycobacterium avium subsp. paratuberculosis K-10] Length = 255 Score = 38.2 bits (88), Expect = 1.9, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 35/97 (36%), Gaps = 9/97 (9%) Query: 27 KVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFS 86 + + L P V +D G G ++R+ ++VIA++ P A + Sbjct: 28 EAVDWLMPPDCGVAVDVGAGTGLFTRALAGRAAHVIAVE--PDARMRAV--LAHRSPAVR 83 Query: 87 LFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDR 123 + + + +PD+ D V S+ R Sbjct: 84 VLEGRGEAIP--LPDRCADAVFV---SSAWHWMDPQR 115 >gi|14521973|ref|NP_127450.1| proliferating-cell nucleolar antigen P120, putative [Pyrococcus abyssi GE5] gi|5459193|emb|CAB50679.1| Sun/NOL1/NOP nucleolar protein [Pyrococcus abyssi GE5] Length = 385 Score = 38.2 bits (88), Expect = 1.9, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 11/91 (12%) Query: 32 LNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQFSL 87 L P ++I+D GG + + +IA+D+ + +E +R + L Sbjct: 194 LEPKEDELIIDMAAAPGGKTTHIAQLLQNRGEIIAIDKSKNRLKKMEENLRRLGVKNVKL 253 Query: 88 FQATFSQLQDYVPDKGVDGVVFD-----LGV 113 Q L D D ++ D LGV Sbjct: 254 IQMDARNLPDL--GLKADKILLDAPCTALGV 282 >gi|285017549|ref|YP_003375260.1| methyltransferase [Xanthomonas albilineans GPE PC73] gi|283472767|emb|CBA15272.1| putative methyltransferase protein [Xanthomonas albilineans] Length = 260 Score = 38.2 bits (88), Expect = 1.9, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 28/57 (49%) Query: 21 VPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77 VP L V+ LL P PG+ ILD G G + G++V+ +D P ++ + Sbjct: 25 VPALGTAVLDLLAPQPGERILDLGCGDGVLTAKLAASGADVLGVDVSPELIAAARTR 81 >gi|253997900|ref|YP_003049963.1| sun protein [Methylovorus sp. SIP3-4] gi|253984579|gb|ACT49436.1| sun protein [Methylovorus sp. SIP3-4] Length = 427 Score = 38.2 bits (88), Expect = 1.9, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 38/82 (46%), Gaps = 1/82 (1%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSLFQ 89 LL+ APG +LDA GG + ++ +++A+D D + +E ++ K + L Sbjct: 238 LLDLAPGMRVLDACCAPGGKTGHILELADVDLVAMDSDAGRLRRTEENLQRLKLKAQLVT 297 Query: 90 ATFSQLQDYVPDKGVDGVVFDL 111 + + + D ++ D+ Sbjct: 298 GDAADASGWWDGRPFDRILADV 319 >gi|90423811|ref|YP_532181.1| dimethyladenosine transferase [Rhodopseudomonas palustris BisB18] gi|119365055|sp|Q215S4|RSMA_RHOPB RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|90105825|gb|ABD87862.1| dimethyladenosine transferase [Rhodopseudomonas palustris BisB18] Length = 286 Score = 38.2 bits (88), Expect = 1.9, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%) Query: 46 GAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSLFQA 90 G GG +R+ +G+ VIA++RD A+ QE Y + + A Sbjct: 57 GPGGLTRALLALGAAKVIAIERDERALGALQEIAAHYPGRLEIVCA 102 >gi|306820623|ref|ZP_07454252.1| SAM-dependent methyltransferase [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551354|gb|EFM39316.1| SAM-dependent methyltransferase [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 186 Score = 38.2 bits (88), Expect = 1.9, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 36/93 (38%), Gaps = 9/93 (9%) Query: 29 IALLNPAPG----KVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMR-D 80 I L K+ +DAT G G + + + + A D A+ + + + Sbjct: 9 IQKLIIKSNLEDVKIAIDATLGNGKDTITIRETFGKKVKIYAFDIQRDAIERSKRNIPVE 68 Query: 81 YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 Y + Q + + YV + V V+F+LG Sbjct: 69 YHDNIEFIQDSHEFIDKYVEE-KVQLVMFNLGY 100 >gi|269960399|ref|ZP_06174772.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269834826|gb|EEZ88912.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 436 Score = 38.2 bits (88), Expect = 1.9, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 3/90 (3%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR-DYK 82 ++ + + L+P + +LD G G +S K +V+ ++ V + Sbjct: 281 MVAQAVEWLDPQSDERVLDLFCGLGNFSLPIAKRAKHVVGVEGVAEMVEKAANNASLNQI 340 Query: 83 EQFSLFQATFSQLQD--YVPDKGVDGVVFD 110 + A Q + + D V+ D Sbjct: 341 NNAQFYHANLEQDFEGQVWAAEQFDKVLLD 370 >gi|295397805|ref|ZP_06807870.1| ribosomal RNA small subunit methyltransferase B [Aerococcus viridans ATCC 11563] gi|294973940|gb|EFG49702.1| ribosomal RNA small subunit methyltransferase B [Aerococcus viridans ATCC 11563] Length = 482 Score = 38.2 bits (88), Expect = 1.9, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 36/98 (36%), Gaps = 10/98 (10%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMR--DYK 82 + LNP PG+ +LDA GG + + +VIA D + QE + Sbjct: 274 AVEALNPKPGETVLDACAAPGGKTVQIAEAVGRTGHVIACDIAENKLPLIQENVDRMQVA 333 Query: 83 EQFSLFQATFSQLQDYVPDKG-----VDGVVFDLGVSS 115 + + + L D + G D ++ D S Sbjct: 334 DHVEILHQDATALLDRFGENGSEPTSFDKILVDAPCSG 371 >gi|114706569|ref|ZP_01439470.1| SUN-family protein [Fulvimarina pelagi HTCC2506] gi|114537961|gb|EAU41084.1| SUN-family protein [Fulvimarina pelagi HTCC2506] Length = 433 Score = 38.2 bits (88), Expect = 1.9, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 5/79 (6%) Query: 35 APGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91 PG +LD GAGG + + + + + D D ++ E ++ + Sbjct: 230 QPGNQVLDLCAGAGGKTLALAAAMENTGQIHSYDGDRQRLAPIYERLKRAGVRNVQVHDP 289 Query: 92 FSQLQDYVPDKGVDGVVFD 110 + L D + +D V+ D Sbjct: 290 RADLSDL--EGAMDIVLVD 306 >gi|258649232|ref|ZP_05736701.1| acetate kinase [Prevotella tannerae ATCC 51259] gi|260850412|gb|EEX70281.1| acetate kinase [Prevotella tannerae ATCC 51259] Length = 399 Score = 38.2 bits (88), Expect = 2.0, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 48/127 (37%), Gaps = 28/127 (22%) Query: 1 MESKSCKTMSSAIHHTI-GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS 59 M +++ +SAI + + +H LE+ + LLN V G +M S Sbjct: 237 MGTRTGDIDASAILYIMEREHQT--LEEAVNLLN-KESGV-----LG-------ITEMSS 281 Query: 60 NVIALDRDPFAVSCGQET----MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSS 115 ++ +D A G E + Y + + ++ GVD ++F GV Sbjct: 282 DMRIID---DAAMAGNERAQLALDMYDYRIKKYIGAYA-----AAMNGVDAIIFTAGVGE 333 Query: 116 MQIDCGD 122 Q D + Sbjct: 334 HQWDVRE 340 >gi|271969427|ref|YP_003343623.1| type 11 methyltransferase [Streptosporangium roseum DSM 43021] gi|270512602|gb|ACZ90880.1| methyltransferase type 11 [Streptosporangium roseum DSM 43021] Length = 237 Score = 38.2 bits (88), Expect = 2.0, Method: Composition-based stats. Identities = 12/41 (29%), Positives = 20/41 (48%) Query: 32 LNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVS 72 L PG +LD G G ++ + G++V+A D D + Sbjct: 9 LPVGPGTRVLDLGCGGGRHAFEVLRRGADVVAFDMDAEELE 49 >gi|212224547|ref|YP_002307783.1| SAM-dependent methyltransferase [Thermococcus onnurineus NA1] gi|212009504|gb|ACJ16886.1| SAM-dependent methyltransferase [Thermococcus onnurineus NA1] Length = 228 Score = 38.2 bits (88), Expect = 2.0, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 25/61 (40%) Query: 36 PGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95 P +LD G GG+S +G +V+ALD + ++ +D + + L Sbjct: 38 PRGKVLDLACGVGGFSFLLEDLGFDVVALDSSESMLEKARKFAKDKMSRVEFVKGNAENL 97 Query: 96 Q 96 Sbjct: 98 P 98 >gi|163802964|ref|ZP_02196851.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio sp. AND4] gi|159173254|gb|EDP58082.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio sp. AND4] Length = 439 Score = 38.2 bits (88), Expect = 2.0, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 3/90 (3%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR-DYK 82 ++ + + L+P + +LD G G +S K +V+ ++ V + Sbjct: 281 MVAQAVDWLDPKSDERVLDLFCGLGNFSLPIAKHAKHVVGVEGVAEMVEKAANNASLNQI 340 Query: 83 EQFSLFQATFSQLQD--YVPDKGVDGVVFD 110 + A Q + + D V+ D Sbjct: 341 NNAQFYHANLEQDFEGQVWAAEQFDKVLLD 370 >gi|45250002|gb|AAS55715.1| putative methyltransferase [Aneurinibacillus thermoaerophilus] Length = 467 Score = 38.2 bits (88), Expect = 2.0, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 6/74 (8%) Query: 36 PGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95 G+ +LD G G ++ G V +D D V+ ++ F + ++ Sbjct: 274 EGQYVLDLGCGRGEFTELLLSKGIKVTCVDIDEDMVAYCKDR------GFPIVKSDLFSY 327 Query: 96 QDYVPDKGVDGVVF 109 + VPD+ VDG+ Sbjct: 328 LNSVPDRSVDGIFL 341 >gi|159905188|ref|YP_001548850.1| putative RNA methylase [Methanococcus maripaludis C6] gi|159886681|gb|ABX01618.1| putative RNA methylase [Methanococcus maripaludis C6] Length = 351 Score = 38.2 bits (88), Expect = 2.0, Method: Composition-based stats. Identities = 36/171 (21%), Positives = 57/171 (33%), Gaps = 25/171 (14%) Query: 25 LEKVIALLN-PAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82 L + + L+ G+++LD G GG+ +G +I D D V + Y Sbjct: 193 LARCLVNLSRVKEGEIVLDPFCGTGGFLIEAGFLGCKLIGSDIDEQMVKGAILNLNTYDL 252 Query: 83 --EQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 + S+ Q + Y+ + G +DG+V D G S K G DM Sbjct: 253 SKQVISIKQNDAKNVSKYLEELGIEKIDGIVTD----------PPYGISTSKKG--DMLE 300 Query: 138 SCSGISASDVVNQA------NVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 I N N +L L E + + I R+ Sbjct: 301 IFEKIVGVLKDNDYLVFAAPNKMELDLNLIEFYEMRVHKSLTRYIHVYRKD 351 >gi|253681007|ref|ZP_04861810.1| possible rRNA methylase [Clostridium botulinum D str. 1873] gi|253562856|gb|EES92302.1| possible rRNA methylase [Clostridium botulinum D str. 1873] Length = 189 Score = 38.2 bits (88), Expect = 2.0, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 7/95 (7%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETMRD 80 L ++ IA+ G + +DAT G G + ++ + V + D A+ ++ + D Sbjct: 12 LAKE-IAIKKLQHGDIAVDATMGNGNDTVFLAELVGDSGTVYSFDVQKEAIDNTRKKIID 70 Query: 81 --YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 K L + Y+ +K V V+F+LG Sbjct: 71 NKIKTNIQLIHDGHENIDKYI-NKDVKLVMFNLGY 104 >gi|34809569|pdb|1IXK|A Chain A, Crystal Structure Analysis Of Methyltransferase Homolog Protein From Pyrococcus Horikoshii Length = 315 Score = 38.2 bits (88), Expect = 2.0, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 38/100 (38%), Gaps = 10/100 (10%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETMRDYKE-QFS 86 L+P PG+++ D GG + ++ N + A D D + + + Sbjct: 113 ALDPKPGEIVADXAAAPGGKTSYLAQLXRNDGVIYAFDVDENRLRETRLNLSRLGVLNVI 172 Query: 87 LFQATFSQLQDYVPDKGVDGVVFDL---GVSSMQIDCGDR 123 LF ++ + + + D ++ D G ++ +R Sbjct: 173 LFHSSSLHIGELNVE--FDKILLDAPCTGSGTIH-KNPER 209 >gi|282851389|ref|ZP_06260754.1| conserved hypothetical protein [Lactobacillus gasseri 224-1] gi|282557357|gb|EFB62954.1| conserved hypothetical protein [Lactobacillus gasseri 224-1] Length = 226 Score = 38.2 bits (88), Expect = 2.0, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 42/115 (36%), Gaps = 7/115 (6%) Query: 1 MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS- 59 M K K A + L + + L+ P + ++DA G G + Sbjct: 39 MLGKKFKLSPRAFFQLNPEQTSTLYSEALKYLDLTPDQTLIDAYAGVG--TLGILASDQV 96 Query: 60 -NVIALDRDPFAVSCGQETMR-DYKEQFSLFQATFSQLQDYVPDKGV--DGVVFD 110 VI ++ P AV QE ++ Q +L + ++GV D ++ D Sbjct: 97 RQVIGIESIPEAVIDAQENCHLNHVRNAEYIQGNVEKLLPELKNQGVPIDALIVD 151 >gi|221379831|ref|NP_732316.2| tat-like [Drosophila melanogaster] gi|220903121|gb|AAF55523.3| tat-like [Drosophila melanogaster] Length = 466 Score = 38.2 bits (88), Expect = 2.0, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 2/60 (3%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96 VI+DA G GG + F VIA+D D ++ + Y + A F Q Sbjct: 301 VIVDAFCGCGGNAIQFANTCGRVIAVDIDAEKLAMAKHNAGIYGVAHKIEFIHADFLQFA 360 >gi|209447527|pdb|3EGE|A Chain A, Crystal Structure Of Putative Methyltransferase From Antibiotic Biosynthesis Pathway (Yp_324569.1) From Anabaena Variabilis Atcc 29413 At 2.40 A Resolution Length = 261 Score = 38.2 bits (88), Expect = 2.0, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 84/224 (37%), Gaps = 19/224 (8%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84 + +I LLN G VI D G GGYS + G V A++ P V Q + E Sbjct: 23 VNAIINLLNLPKGSVIADIGAGTGGYSVALANQGLFVYAVE--PSIVXRQQAVVHPQVEW 80 Query: 85 FSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ------KSGPLDMRMS 138 F+ + + +PDK VDGV+ L + ++ SFQ + G + + Sbjct: 81 FTGYAENLA-----LPDKSVDGVISILAI--HHFSHLEK--SFQEXQRIIRDGTIVLLTF 131 Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198 ++ + L L ++Q + + +R ++ PF DLS L Sbjct: 132 DIRLAQRIWLYDYFPFLWEDALRFLPLDEQINLLQENTKRRVEAIPFLLPHDLSDLFAAA 191 Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 + + R+ + N ++ + +GL L G Sbjct: 192 AWRRPELYLKAEVRAGISSFALANQDL--VEKGLELLTADLNNG 233 >gi|163803827|ref|ZP_02197677.1| ribosomal protein L11 methyltransferase [Vibrio sp. AND4] gi|159172370|gb|EDP57247.1| ribosomal protein L11 methyltransferase [Vibrio sp. AND4] Length = 295 Score = 38.2 bits (88), Expect = 2.0, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 34/92 (36%), Gaps = 21/92 (22%) Query: 28 VIALLNPAP--GKVILDATFGAGGYSRSFCKMGS------NVIALDRDPFAVSCGQETMR 79 + L GK ++D FG G + + VI +D DP A+ ++ Sbjct: 149 CLEWLESKDLSGKTVID--FGCG---SGILAIAAIKLGAEKVIGIDIDPQALQASRDNAE 203 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDL 111 QL+ Y+P +G++ D+ Sbjct: 204 R--------NGVADQLEVYLPQNQPEGLLADV 227 >gi|170727692|ref|YP_001761718.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella woodyi ATCC 51908] gi|226725394|sp|B1KPU0|RUMA_SHEWM RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|169813039|gb|ACA87623.1| RNA methyltransferase, TrmA family [Shewanella woodyi ATCC 51908] Length = 443 Score = 38.2 bits (88), Expect = 2.0, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 36/89 (40%), Gaps = 2/89 (2%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82 ++++ + L+ + +LD G G +S K G+ VI ++ P V+ + + Sbjct: 286 MVDQAVQWLDVKADERVLDLFCGVGNFSLPLAKSGAEVIGVEGVPEMVAQARINAKQSDL 345 Query: 83 EQFSLFQATFS-QLQDYVPDKGVDGVVFD 110 + F S L VD ++ D Sbjct: 346 SDVTFFHTDLSADLSKEPWLGKVDKLLLD 374 >gi|66571188|gb|AAY51559.1| IP01327p [Drosophila melanogaster] gi|68051281|gb|AAY84904.1| LD22407p [Drosophila melanogaster] gi|220943348|gb|ACL84217.1| CG31241-PB [synthetic construct] gi|220953320|gb|ACL89203.1| CG31241-PB [synthetic construct] Length = 491 Score = 38.2 bits (88), Expect = 2.0, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 2/60 (3%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96 VI+DA G GG + F VIA+D D ++ + Y + A F Q Sbjct: 326 VIVDAFCGCGGNAIQFANTCGRVIAVDIDAEKLAMAKHNAGIYGVAHKIEFIHADFLQFA 385 >gi|116629999|ref|YP_815171.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus gasseri ATCC 33323] gi|238853814|ref|ZP_04644180.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus gasseri 202-4] gi|311110369|ref|ZP_07711766.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus gasseri MV-22] gi|116095581|gb|ABJ60733.1| 23S rRNA m(5)U-1939 methyltransferase [Lactobacillus gasseri ATCC 33323] gi|238833623|gb|EEQ25894.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus gasseri 202-4] gi|311065523|gb|EFQ45863.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus gasseri MV-22] Length = 462 Score = 38.2 bits (88), Expect = 2.0, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 42/115 (36%), Gaps = 7/115 (6%) Query: 1 MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS- 59 M K K A + L + + L+ P + ++DA G G + Sbjct: 275 MLGKKFKLSPRAFFQLNPEQTSTLYSEALKYLDLTPDQTLIDAYAGVG--TLGILASDQV 332 Query: 60 -NVIALDRDPFAVSCGQETMR-DYKEQFSLFQATFSQLQDYVPDKGV--DGVVFD 110 VI ++ P AV QE ++ Q +L + ++GV D ++ D Sbjct: 333 RQVIGIESIPEAVIDAQENCHLNHVRNAEYIQGNVEKLLPELKNQGVPIDALIVD 387 >gi|315143898|gb|EFT87914.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX2141] Length = 456 Score = 38.2 bits (88), Expect = 2.1, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 33/98 (33%), Gaps = 17/98 (17%) Query: 23 VLLEKVIALLNPAPGKVILD-----ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77 VL + I +L+ P + ++D T G S K V +D P A+ + Sbjct: 297 VLYNEGIKVLDLQPNETVVDAYCGVGTIG-----LSLAKQAHQVRGMDTIPAAIDDARFN 351 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFD 110 + + +D +P D +V D Sbjct: 352 AKRLG--VTNTHYAVGTAEDLLPKWFKEGFKPDAIVVD 387 >gi|254718818|ref|ZP_05180629.1| dimethyladenosine transferase [Brucella sp. 83/13] gi|265983803|ref|ZP_06096538.1| dimethyladenosine transferase [Brucella sp. 83/13] gi|306838740|ref|ZP_07471574.1| dimethyladenosine transferase [Brucella sp. NF 2653] gi|264662395|gb|EEZ32656.1| dimethyladenosine transferase [Brucella sp. 83/13] gi|306406142|gb|EFM62387.1| dimethyladenosine transferase [Brucella sp. NF 2653] Length = 276 Score = 38.2 bits (88), Expect = 2.1, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 19/45 (42%) Query: 46 GAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQA 90 G GG +R+ G+ V A++RD + E Y + + Sbjct: 56 GPGGLTRALLAQGAYVTAIERDDRCLEALAEIAAHYPGRLRIIAG 100 >gi|323500063|ref|ZP_08105017.1| SAM-dependent methyltransferase [Vibrio sinaloensis DSM 21326] gi|323314919|gb|EGA67976.1| SAM-dependent methyltransferase [Vibrio sinaloensis DSM 21326] Length = 210 Score = 37.9 bits (87), Expect = 2.1, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 1/70 (1%) Query: 27 KVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFS 86 + + L+ + V +D G G +G V D +P A+ + + + Q S Sbjct: 37 EFVHQLSKSNEGVAIDCGCGTGSDIDYLSAVGYKVYGFDPNPDAIEICVQRFAE-RPQVS 95 Query: 87 LFQATFSQLQ 96 + QA F Q Sbjct: 96 IQQARFENFQ 105 >gi|295839889|ref|ZP_06826822.1| methyltransferase [Streptomyces sp. SPB74] gi|295827696|gb|EFG65548.1| methyltransferase [Streptomyces sp. SPB74] Length = 196 Score = 37.9 bits (87), Expect = 2.1, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 25/54 (46%) Query: 51 SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV 104 + + G+ V+A+D DP A + + R + + + + + + +P+ V Sbjct: 62 TAEAARFGAAVLAIDADPDACARTTASARRFGVRVQVVHGSAPHILEDLPEPDV 115 >gi|310765566|gb|ADP10516.1| Ribosomal RNA small subunit methyltransferase B [Erwinia sp. Ejp617] Length = 441 Score = 37.9 bits (87), Expect = 2.1, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85 +ALL P G+ ILD GG + + V+A+D D ++ E ++ Sbjct: 250 CVALLAPRDGEQILDLCAAPGGKTTHILEAAPQAKVLAVDVDAQRLARISENLQRLNLHA 309 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + + D+ D ++ D S Sbjct: 310 EVKLGDGRTPAAWCGDRLFDRILLDAPCS 338 >gi|283480068|emb|CAY75984.1| Ribosomal RNA small subunit methyltransferase B [Erwinia pyrifoliae DSM 12163] Length = 456 Score = 37.9 bits (87), Expect = 2.1, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85 +ALL P G+ ILD GG + + V+A+D D ++ E ++ Sbjct: 265 CVALLAPRDGEQILDLCAAPGGKTTHILEAAPQAKVLAVDVDAQRLARISENLQRLNLHA 324 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + + D+ D ++ D S Sbjct: 325 EVKLGDGRTPAAWCGDRLFDRILLDAPCS 353 >gi|241759288|ref|ZP_04757394.1| 23S rRNA-methyltransferase [Neisseria flavescens SK114] gi|241320424|gb|EER56721.1| 23S rRNA-methyltransferase [Neisseria flavescens SK114] Length = 441 Score = 37.9 bits (87), Expect = 2.1, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 4/92 (4%) Query: 23 VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQE--TMRD 80 V++ + + LLNP G+ I D G G +S K G++V+ ++ + V +E + Sbjct: 281 VMVARAVRLLNPQKGERIADLFCGLGNFSVPLAKSGASVVGIEGADYLVDRARENARLNR 340 Query: 81 YKEQFSL-FQATFSQLQDYVPDKG-VDGVVFD 110 E + F + V G D ++ D Sbjct: 341 CAENMTFSVADLFDTDEKTVESWGRFDKMLLD 372 >gi|259909968|ref|YP_002650324.1| 16S rRNA methyltransferase B [Erwinia pyrifoliae Ep1/96] gi|224965590|emb|CAX57122.1| 16S rRNA methyltransferase B [Erwinia pyrifoliae Ep1/96] Length = 429 Score = 37.9 bits (87), Expect = 2.1, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 2/89 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85 +ALL P G+ ILD GG + + V+A+D D ++ E ++ Sbjct: 238 CVALLAPRDGEQILDLCAAPGGKTTHILEAAPQAKVLAVDVDAQRLARISENLQRLNLHA 297 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + + D+ D ++ D S Sbjct: 298 EVKLGDGRTPAAWCGDRLFDRILLDAPCS 326 >gi|218887204|ref|YP_002436525.1| rRNA methylase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758158|gb|ACL09057.1| putative rRNA methylase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 243 Score = 37.9 bits (87), Expect = 2.1, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 30/83 (36%), Gaps = 12/83 (14%) Query: 41 LDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQ 94 +D T G G+ F V A D P A++ E + E+ +L + Sbjct: 72 VDGTAGN-GHDTLFLARLVGARGLVHAFDVQPRALARTAERLASEGLEERVALHGRGHEE 130 Query: 95 LQDYVPDKGV-----DGVVFDLG 112 L + GV +F+LG Sbjct: 131 LAAALASHGVWPPRISAAMFNLG 153 >gi|150403072|ref|YP_001330366.1| putative RNA methylase [Methanococcus maripaludis C7] gi|150034102|gb|ABR66215.1| putative RNA methylase [Methanococcus maripaludis C7] Length = 350 Score = 37.9 bits (87), Expect = 2.1, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 63/169 (37%), Gaps = 21/169 (12%) Query: 25 LEKVIALLN-PAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82 L + + L+ G+++LD G GG+ +G +I D D V + Y Sbjct: 192 LARCLVNLSRVKEGEIVLDPFCGTGGFLIEAGFLGCKLIGSDIDEQMVKGAILNLNTYDL 251 Query: 83 --EQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFS-FQKSGPLDMR 136 + S+ Q + Y+ + G +DG+V D G S F+K L++ Sbjct: 252 SKQVISIKQNDAKNVSKYLGELGIEKIDGIVTD----------PPYGISTFKKGDMLEIF 301 Query: 137 MSCSGI---SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182 +G+ + V N +L L E + + I R++ Sbjct: 302 EKIAGVLKNNDYLVFAAPNKMELNLELVKFYEMRVHKSLTRYIHVYRKN 350 >gi|322802317|gb|EFZ22713.1| hypothetical protein SINV_12301 [Solenopsis invicta] Length = 1030 Score = 37.9 bits (87), Expect = 2.1, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 2/63 (3%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96 I+DA GAG S F VIA+D DP + + Y ++ F QL Sbjct: 874 TIIDAFCGAGSNSIQFAFTCERVIAIDIDPNKIKIARHNAGIYGVDDRIEFITGDFLQLA 933 Query: 97 DYV 99 + Sbjct: 934 PQL 936 >gi|307171691|gb|EFN63426.1| Trimethylguanosine synthase-like protein [Camponotus floridanus] Length = 1026 Score = 37.9 bits (87), Expect = 2.1, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 2/63 (3%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96 I+DA GAG S F VIA+D DP + + Y ++ F QL Sbjct: 870 TIIDAFCGAGSNSIQFAFTCERVIAIDIDPNKIKIARHNAGIYGVDDRIEFITGDFLQLA 929 Query: 97 DYV 99 + Sbjct: 930 PQL 932 >gi|269127860|ref|YP_003301230.1| type 11 methyltransferase [Thermomonospora curvata DSM 43183] gi|268312818|gb|ACY99192.1| Methyltransferase type 11 [Thermomonospora curvata DSM 43183] Length = 255 Score = 37.9 bits (87), Expect = 2.1, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 25/53 (47%) Query: 30 ALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82 PG +LD GAG ++ + G++V+A D D ++ ++ R + Sbjct: 7 ERFPITPGDHVLDMGCGAGRHAFELYRRGAHVVAFDLDADELAGVEKMFRAMR 59 >gi|28899340|ref|NP_798945.1| 23S rRNA 5-methyluridine methyltransferase [Vibrio parahaemolyticus RIMD 2210633] gi|260363768|ref|ZP_05776537.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio parahaemolyticus K5030] gi|260878969|ref|ZP_05891324.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio parahaemolyticus AN-5034] gi|260898314|ref|ZP_05906810.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio parahaemolyticus Peru-466] gi|50401546|sp|Q87LP5|RUMA_VIBPA RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|28807576|dbj|BAC60829.1| putative TrmA family RNA methyltransferase [Vibrio parahaemolyticus RIMD 2210633] gi|308085240|gb|EFO34935.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio parahaemolyticus Peru-466] gi|308090505|gb|EFO40200.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio parahaemolyticus AN-5034] gi|308111237|gb|EFO48777.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio parahaemolyticus K5030] Length = 439 Score = 37.9 bits (87), Expect = 2.1, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 3/90 (3%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR-DYK 82 ++E+ I L+P + +LD G G +S K +V+ ++ V + Sbjct: 281 MVEQAIKWLDPQSDERVLDLFCGLGNFSLPIAKRAKHVVGVEGVAEMVEKASNNASLNQI 340 Query: 83 EQFSLFQATFSQLQD--YVPDKGVDGVVFD 110 + A Q D + D V+ D Sbjct: 341 NNAQFYHANLEQDFDGQAWAAEKFDKVLLD 370 >gi|328553098|gb|AEB23590.1| methyltransferase [Bacillus amyloliquefaciens TA208] gi|328912130|gb|AEB63726.1| putative methyltransferase [Bacillus amyloliquefaciens LL3] Length = 256 Score = 37.9 bits (87), Expect = 2.1, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 32/100 (32%), Gaps = 17/100 (17%) Query: 26 EKVIALLNPAPGKVILDATFGAGGYSRSFCK-----MGSNVIALDR----------DPFA 70 E +I G LD T G S + VI L++ Sbjct: 84 EPMIKAAGLREGDTFLDCTLGLA--SDAILASMAVGKSGQVIGLEKNKLVSLLVETGLQT 141 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFD 110 G E ++ ++ + A S +PD VD + FD Sbjct: 142 WETGIEPLQTAMKRIQVKHADCSDYLRNLPDSSVDVIYFD 181 >gi|126460130|ref|YP_001056408.1| cobalt-precorrin-6Y C(15)-methyltransferase [Pyrobaculum calidifontis JCM 11548] gi|166225724|sp|A3MWC5|CBIT_PYRCJ RecName: Full=Probable cobalt-precorrin-6Y C(15)-methyltransferase [decarboxylating] gi|126249851|gb|ABO08942.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit [Pyrobaculum calidifontis JCM 11548] Length = 195 Score = 37.9 bits (87), Expect = 2.1, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 5/79 (6%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRS---FCKMGSNVIALDRDPFAVSCGQETMRDYK-- 82 ++ L G V++D G G S GS V A+D D A+ + + Sbjct: 32 ALSKLRLRRGGVLVDVGCGTGSVSVEAALIMGEGSRVYAVDYDEEALMLTKRNAEKFGVA 91 Query: 83 EQFSLFQATFSQLQDYVPD 101 ++ L + ++ +P Sbjct: 92 DRVVLVRGKAPEVLAELPK 110 >gi|308173976|ref|YP_003920681.1| methyltransferase [Bacillus amyloliquefaciens DSM 7] gi|307606840|emb|CBI43211.1| putative methyltransferase [Bacillus amyloliquefaciens DSM 7] Length = 256 Score = 37.9 bits (87), Expect = 2.2, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 32/100 (32%), Gaps = 17/100 (17%) Query: 26 EKVIALLNPAPGKVILDATFGAGGYSRSFCK-----MGSNVIALDR----------DPFA 70 E +I G LD T G S + VI L++ Sbjct: 84 EPMIKAAGLREGDTFLDCTLGLA--SDAILASMAVGKSGQVIGLEKNKLVSLLVETGLQT 141 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFD 110 G E ++ ++ + A S +PD VD + FD Sbjct: 142 WETGIEPLQTAMKRIQVKHADCSDYLRNLPDSSVDVIYFD 181 >gi|298674358|ref|YP_003726108.1| type 11 methyltransferase [Methanohalobium evestigatum Z-7303] gi|298287346|gb|ADI73312.1| Methyltransferase type 11 [Methanohalobium evestigatum Z-7303] Length = 267 Score = 37.9 bits (87), Expect = 2.2, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 3/97 (3%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSL 87 +I +L K +LD G G S + G V++ D +P ++ E R Y Sbjct: 51 IINILKERGVKKVLDVATGTGFNSVRLLQAGFEVVSADGNPEMLAKAFENARKYGYLMRT 110 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGVS-SMQIDCGDR 123 QA + ++ V + D ++ LG S + + DR Sbjct: 111 VQADWRWMKQDVHE-NFDAIIC-LGNSFTHLFNERDR 145 >gi|221069847|ref|ZP_03545952.1| SurA domain protein [Comamonas testosteroni KF-1] gi|220714870|gb|EED70238.1| SurA domain protein [Comamonas testosteroni KF-1] Length = 475 Score = 37.9 bits (87), Expect = 2.2, Method: Composition-based stats. Identities = 26/136 (19%), Positives = 44/136 (32%), Gaps = 17/136 (12%) Query: 50 YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVF 109 ++R + + + DYK + QATF QL G Sbjct: 332 HARHILLTVGE-------GMTEAQAAKRLEDYKRRVEAGQATFQQLAQEFSKDGSARNGG 384 Query: 110 DLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVK--DLTRILGILGEEK 167 DLG SS + LD G ++ VV++ V L E+ Sbjct: 385 DLGWSSPGQFVPE------FERVLDSL--QPGQISNPVVSRFGVHLIQLIERRQEKLTER 436 Query: 168 QASRIAHAIVKRRQSA 183 + + +V+ R++ Sbjct: 437 EQREMVRNVVRERKAE 452 >gi|306845283|ref|ZP_07477859.1| dimethyladenosine transferase [Brucella sp. BO1] gi|306274442|gb|EFM56249.1| dimethyladenosine transferase [Brucella sp. BO1] Length = 276 Score = 37.9 bits (87), Expect = 2.2, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 19/45 (42%) Query: 46 GAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQA 90 G GG +R+ G+ V A++RD + E Y + + Sbjct: 56 GPGGLTRALLAQGAYVTAIERDDRCLEALAEIAAHYPGRLRIIAG 100 >gi|198284531|ref|YP_002220852.1| TrmA family RNA methyltransferase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667266|ref|YP_002427198.1| 23S rRNA (uracil-5-)-methyltransferase [Acidithiobacillus ferrooxidans ATCC 23270] gi|254766918|sp|B7J921|RUMA_ACIF2 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|254766919|sp|B5EPA4|RUMA_ACIF5 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|198249052|gb|ACH84645.1| RNA methyltransferase, TrmA family [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519479|gb|ACK80065.1| 23S rRNA (uracil-5-)-methyltransferase [Acidithiobacillus ferrooxidans ATCC 23270] Length = 440 Score = 37.9 bits (87), Expect = 2.2, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 47/92 (51%), Gaps = 4/92 (4%) Query: 23 VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRD----PFAVSCGQETM 78 V++ + +ALL P PG+ ILD G G ++ ++G+ V+ ++ D A Sbjct: 281 VMVRRAMALLQPQPGEHILDLFCGLGNFTLPIARLGAQVLGIEGDARLVALAAENAAANG 340 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFD 110 K ++++ T ++++D+ P +D ++ D Sbjct: 341 LADKARYAVADLTQARMEDFAPAGAIDKMLID 372 >gi|163842952|ref|YP_001627356.1| dimethyladenosine transferase [Brucella suis ATCC 23445] gi|189028803|sp|B0CL06|RSMA_BRUSI RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|163673675|gb|ABY37786.1| dimethyladenosine transferase [Brucella suis ATCC 23445] Length = 276 Score = 37.9 bits (87), Expect = 2.2, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 19/45 (42%) Query: 46 GAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQA 90 G GG +R+ G+ V A++RD + E Y + + Sbjct: 56 GPGGLTRALLAQGAYVTAIERDDRCLEALAEIAAHYPGRLRIIAG 100 >gi|317049808|ref|YP_004117456.1| sun protein [Pantoea sp. At-9b] gi|316951425|gb|ADU70900.1| sun protein [Pantoea sp. At-9b] Length = 428 Score = 37.9 bits (87), Expect = 2.2, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 2/86 (2%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQFSLF 88 LL P G+ ILD GG + ++ V+A+D D ++ +E ++ Q + Sbjct: 240 LLEPQNGESILDLCAAPGGKTTHILEIAPQAAVLAVDIDEQRLTRVRENLQRLGMQADVR 299 Query: 89 QATFSQLQDYVPDKGVDGVVFDLGVS 114 Q ++ DK D ++ D S Sbjct: 300 QGDGRTPAEWCGDKQFDRILLDAPCS 325 >gi|89067369|ref|ZP_01154882.1| nicotinate-nucleotide pyrophosphorylase [Oceanicola granulosus HTCC2516] gi|89046938|gb|EAR52992.1| nicotinate-nucleotide pyrophosphorylase [Oceanicola granulosus HTCC2516] Length = 285 Score = 37.9 bits (87), Expect = 2.2, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 7/74 (9%) Query: 47 AGGY------SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP 100 GG+ S + ++ IA AV T + + + QL++ + Sbjct: 157 GGGHNHRFSLSDAILIKDNH-IAAAGGIPAVLAAVRTQASHMVRVEIEVDRLDQLEEVLA 215 Query: 101 DKGVDGVVFDLGVS 114 + G D V+ D S Sbjct: 216 EGGADVVLLDNMDS 229 >gi|306842053|ref|ZP_07474726.1| dimethyladenosine transferase [Brucella sp. BO2] gi|306287894|gb|EFM59314.1| dimethyladenosine transferase [Brucella sp. BO2] Length = 276 Score = 37.9 bits (87), Expect = 2.2, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 19/45 (42%) Query: 46 GAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQA 90 G GG +R+ G+ V A++RD + E Y + + Sbjct: 56 GPGGLTRALLAQGAYVTAIERDDRCLEALAEIAAHYPGRLRIIAG 100 >gi|296812885|ref|XP_002846780.1| WW domain-containing protein [Arthroderma otae CBS 113480] gi|238842036|gb|EEQ31698.1| WW domain-containing protein [Arthroderma otae CBS 113480] Length = 238 Score = 37.9 bits (87), Expect = 2.2, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 7/77 (9%) Query: 39 VILDATF-GAGGYSRSFCK--MGSNVIALDRDPFAVSCGQETMRDY--KEQFSLFQA-TF 92 +++D TF GAGG + +F K V A+++DP + C + Y ++ + F F Sbjct: 74 ILID-TFAGAGGNTIAFAKSNRWKRVYAIEKDPETLRCAKHNAELYGVGDKITWFLGDCF 132 Query: 93 SQLQDYVPDKGVDGVVF 109 LQ+ + D V+F Sbjct: 133 EILQNQLKDLAPYSVIF 149 >gi|254173370|ref|ZP_04880043.1| SAM-dependent methyltransferase [Thermococcus sp. AM4] gi|214032779|gb|EEB73608.1| SAM-dependent methyltransferase [Thermococcus sp. AM4] Length = 285 Score = 37.9 bits (87), Expect = 2.3, Method: Composition-based stats. Identities = 27/194 (13%), Positives = 61/194 (31%), Gaps = 41/194 (21%) Query: 29 IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCG----QETMRDYKEQ 84 + + P G+ +LD G G + K G+ VI +++D + + Sbjct: 118 VNAVKPKEGETVLDTCMGLGYTAIEASKRGAYVITIEKDKNVIELARINPWSRELFTGGR 177 Query: 85 FSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISA 144 + ++ D+ D V+ D R FS A Sbjct: 178 IQVIHGDAFEVVKRFKDESFDVVIHD----------PPR-FSL----------------A 210 Query: 145 SDVVNQANVKDLTRILG----------ILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 + ++ ++L R+L G++ + + +++R + A F + + Sbjct: 211 GQLYSEEFYRELFRVLKPGGRLFHYVGNPGKKYRRKDLQKGVMERLRRAGFVGVKRVEEA 270 Query: 195 IQKTVYFSKNNRIH 208 + +N Sbjct: 271 LGVVARKPENKGGK 284 >gi|23501569|ref|NP_697696.1| dimethyladenosine transferase [Brucella suis 1330] gi|82699572|ref|YP_414146.1| dimethyladenosine transferase [Brucella melitensis biovar Abortus 2308] gi|148560508|ref|YP_001258664.1| dimethyladenosine transferase [Brucella ovis ATCC 25840] gi|161618651|ref|YP_001592538.1| dimethyladenosine transferase [Brucella canis ATCC 23365] gi|189023894|ref|YP_001934662.1| dimethyladenosine transferase [Brucella abortus S19] gi|225627179|ref|ZP_03785217.1| dimethyladenosine transferase [Brucella ceti str. Cudo] gi|225852202|ref|YP_002732435.1| dimethyladenosine transferase [Brucella melitensis ATCC 23457] gi|237815135|ref|ZP_04594133.1| dimethyladenosine transferase [Brucella abortus str. 2308 A] gi|254688954|ref|ZP_05152208.1| dimethyladenosine transferase [Brucella abortus bv. 6 str. 870] gi|254693436|ref|ZP_05155264.1| dimethyladenosine transferase [Brucella abortus bv. 3 str. Tulya] gi|254697088|ref|ZP_05158916.1| dimethyladenosine transferase [Brucella abortus bv. 2 str. 86/8/59] gi|254701465|ref|ZP_05163293.1| dimethyladenosine transferase [Brucella suis bv. 5 str. 513] gi|254704012|ref|ZP_05165840.1| dimethyladenosine transferase [Brucella suis bv. 3 str. 686] gi|254707614|ref|ZP_05169442.1| dimethyladenosine transferase [Brucella pinnipedialis M163/99/10] gi|254709803|ref|ZP_05171614.1| dimethyladenosine transferase [Brucella pinnipedialis B2/94] gi|254713807|ref|ZP_05175618.1| dimethyladenosine transferase [Brucella ceti M644/93/1] gi|254717135|ref|ZP_05178946.1| dimethyladenosine transferase [Brucella ceti M13/05/1] gi|254729984|ref|ZP_05188562.1| dimethyladenosine transferase [Brucella abortus bv. 4 str. 292] gi|256031294|ref|ZP_05444908.1| dimethyladenosine transferase [Brucella pinnipedialis M292/94/1] gi|256113218|ref|ZP_05454086.1| dimethyladenosine transferase [Brucella melitensis bv. 3 str. Ether] gi|256159408|ref|ZP_05457186.1| dimethyladenosine transferase [Brucella ceti M490/95/1] gi|256254702|ref|ZP_05460238.1| dimethyladenosine transferase [Brucella ceti B1/94] gi|256257202|ref|ZP_05462738.1| dimethyladenosine transferase [Brucella abortus bv. 9 str. C68] gi|256264290|ref|ZP_05466822.1| dimethyladenosine transferase [Brucella melitensis bv. 2 str. 63/9] gi|256369117|ref|YP_003106625.1| dimethyladenosine transferase [Brucella microti CCM 4915] gi|260168433|ref|ZP_05755244.1| dimethyladenosine transferase [Brucella sp. F5/99] gi|260545604|ref|ZP_05821345.1| dimethyladenosine transferase [Brucella abortus NCTC 8038] gi|260566739|ref|ZP_05837209.1| dimethyladenosine transferase [Brucella suis bv. 4 str. 40] gi|260754443|ref|ZP_05866791.1| dimethyladenosine transferase [Brucella abortus bv. 6 str. 870] gi|260757662|ref|ZP_05870010.1| dimethyladenosine transferase [Brucella abortus bv. 4 str. 292] gi|260761489|ref|ZP_05873832.1| dimethyladenosine transferase [Brucella abortus bv. 2 str. 86/8/59] gi|260883472|ref|ZP_05895086.1| dimethyladenosine transferase [Brucella abortus bv. 9 str. C68] gi|261213689|ref|ZP_05927970.1| dimethyladenosine transferase [Brucella abortus bv. 3 str. Tulya] gi|261218950|ref|ZP_05933231.1| dimethyladenosine transferase [Brucella ceti M13/05/1] gi|261221882|ref|ZP_05936163.1| dimethyladenosine transferase [Brucella ceti B1/94] gi|261315104|ref|ZP_05954301.1| dimethyladenosine transferase [Brucella pinnipedialis M163/99/10] gi|261317341|ref|ZP_05956538.1| dimethyladenosine transferase [Brucella pinnipedialis B2/94] gi|261321551|ref|ZP_05960748.1| dimethyladenosine transferase [Brucella ceti M644/93/1] gi|261752008|ref|ZP_05995717.1| dimethyladenosine transferase [Brucella suis bv. 5 str. 513] gi|261754667|ref|ZP_05998376.1| dimethyladenosine transferase [Brucella suis bv. 3 str. 686] gi|261757895|ref|ZP_06001604.1| dimethyladenosine transferase [Brucella sp. F5/99] gi|265988379|ref|ZP_06100936.1| dimethyladenosine transferase [Brucella pinnipedialis M292/94/1] gi|265994629|ref|ZP_06107186.1| dimethyladenosine transferase [Brucella melitensis bv. 3 str. Ether] gi|265997845|ref|ZP_06110402.1| dimethyladenosine transferase [Brucella ceti M490/95/1] gi|297248052|ref|ZP_06931770.1| dimethyladenosine transferase [Brucella abortus bv. 5 str. B3196] gi|33516941|sp|Q8G1N0|RSMA_BRUSU RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|122064285|sp|Q2YN15|RSMA_BRUA2 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|166221650|sp|A5VPL7|RSMA_BRUO2 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|189028802|sp|A9MA55|RSMA_BRUC2 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226729760|sp|B2S4U1|RSMA_BRUA1 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|254807862|sp|C0RI23|RSMA_BRUMB RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|23347481|gb|AAN29611.1| dimethyladenosine transferase [Brucella suis 1330] gi|82615673|emb|CAJ10660.1| SAM (and some other nucleotide) binding motif:Ribosomal RNA adenine dimethylase [Brucella melitensis biovar Abortus 2308] gi|148371765|gb|ABQ61744.1| dimethyladenosine transferase [Brucella ovis ATCC 25840] gi|161335462|gb|ABX61767.1| dimethyladenosine transferase [Brucella canis ATCC 23365] gi|189019466|gb|ACD72188.1| SAM (and some other nucleotide) binding motif [Brucella abortus S19] gi|225618014|gb|EEH15058.1| dimethyladenosine transferase [Brucella ceti str. Cudo] gi|225640567|gb|ACO00481.1| dimethyladenosine transferase [Brucella melitensis ATCC 23457] gi|237789972|gb|EEP64182.1| dimethyladenosine transferase [Brucella abortus str. 2308 A] gi|255999277|gb|ACU47676.1| dimethyladenosine transferase [Brucella microti CCM 4915] gi|260097011|gb|EEW80886.1| dimethyladenosine transferase [Brucella abortus NCTC 8038] gi|260156257|gb|EEW91337.1| dimethyladenosine transferase [Brucella suis bv. 4 str. 40] gi|260667980|gb|EEX54920.1| dimethyladenosine transferase [Brucella abortus bv. 4 str. 292] gi|260671921|gb|EEX58742.1| dimethyladenosine transferase [Brucella abortus bv. 2 str. 86/8/59] gi|260674551|gb|EEX61372.1| dimethyladenosine transferase [Brucella abortus bv. 6 str. 870] gi|260873000|gb|EEX80069.1| dimethyladenosine transferase [Brucella abortus bv. 9 str. C68] gi|260915296|gb|EEX82157.1| dimethyladenosine transferase [Brucella abortus bv. 3 str. Tulya] gi|260920466|gb|EEX87119.1| dimethyladenosine transferase [Brucella ceti B1/94] gi|260924039|gb|EEX90607.1| dimethyladenosine transferase [Brucella ceti M13/05/1] gi|261294241|gb|EEX97737.1| dimethyladenosine transferase [Brucella ceti M644/93/1] gi|261296564|gb|EEY00061.1| dimethyladenosine transferase [Brucella pinnipedialis B2/94] gi|261304130|gb|EEY07627.1| dimethyladenosine transferase [Brucella pinnipedialis M163/99/10] gi|261737879|gb|EEY25875.1| dimethyladenosine transferase [Brucella sp. F5/99] gi|261741761|gb|EEY29687.1| dimethyladenosine transferase [Brucella suis bv. 5 str. 513] gi|261744420|gb|EEY32346.1| dimethyladenosine transferase [Brucella suis bv. 3 str. 686] gi|262552313|gb|EEZ08303.1| dimethyladenosine transferase [Brucella ceti M490/95/1] gi|262765742|gb|EEZ11531.1| dimethyladenosine transferase [Brucella melitensis bv. 3 str. Ether] gi|263094550|gb|EEZ18359.1| dimethyladenosine transferase [Brucella melitensis bv. 2 str. 63/9] gi|264660576|gb|EEZ30837.1| dimethyladenosine transferase [Brucella pinnipedialis M292/94/1] gi|297175221|gb|EFH34568.1| dimethyladenosine transferase [Brucella abortus bv. 5 str. B3196] gi|326408701|gb|ADZ65766.1| SAM (and some other nucleotide) binding motif protein [Brucella melitensis M28] gi|326538425|gb|ADZ86640.1| dimethyladenosine transferase [Brucella melitensis M5-90] Length = 276 Score = 37.9 bits (87), Expect = 2.3, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 19/45 (42%) Query: 46 GAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQA 90 G GG +R+ G+ V A++RD + E Y + + Sbjct: 56 GPGGLTRALLAQGAYVTAIERDDRCLEALAEIAAHYPGRLRIIAG 100 >gi|62289644|ref|YP_221437.1| dimethyladenosine transferase [Brucella abortus bv. 1 str. 9-941] gi|81309439|sp|Q57E58|RSMA_BRUAB RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|62195776|gb|AAX74076.1| KsgA, dimethyladenosine transferase [Brucella abortus bv. 1 str. 9-941] Length = 276 Score = 37.9 bits (87), Expect = 2.3, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 19/45 (42%) Query: 46 GAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQA 90 G GG +R+ G+ V A++RD + E Y + + Sbjct: 56 GPGGLTRALLAQGAYVTAIERDDRCLEALAEIAAHYPGRLRIIAG 100 >gi|39936129|ref|NP_948405.1| dimethyladenosine transferase [Rhodopseudomonas palustris CGA009] gi|192291847|ref|YP_001992452.1| dimethyladenosine transferase [Rhodopseudomonas palustris TIE-1] gi|62900541|sp|Q6N5B4|RSMA_RHOPA RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|226732615|sp|B3Q9S4|RSMA_RHOPT RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|39649983|emb|CAE28507.1| dimethyladenosine transferase [Rhodopseudomonas palustris CGA009] gi|192285596|gb|ACF01977.1| dimethyladenosine transferase [Rhodopseudomonas palustris TIE-1] Length = 287 Score = 37.9 bits (87), Expect = 2.3, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 1/52 (1%) Query: 46 GAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ 96 G GG +R+ G+ VIA++RD A+ +E Y + + + Sbjct: 57 GPGGLTRALLATGAKRVIAIERDERALGALEEIAAHYPGRLDIISGDAMEFD 108 >gi|17987550|ref|NP_540184.1| dimethyladenosine transferase [Brucella melitensis bv. 1 str. 16M] gi|256044375|ref|ZP_05447279.1| dimethyladenosine transferase [Brucella melitensis bv. 1 str. Rev.1] gi|260563727|ref|ZP_05834213.1| dimethyladenosine transferase [Brucella melitensis bv. 1 str. 16M] gi|265990793|ref|ZP_06103350.1| dimethyladenosine transferase [Brucella melitensis bv. 1 str. Rev.1] gi|27151583|sp|Q8YG94|RSMA_BRUME RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|17983253|gb|AAL52448.1| dimethyladenosine transferase [Brucella melitensis bv. 1 str. 16M] gi|260153743|gb|EEW88835.1| dimethyladenosine transferase [Brucella melitensis bv. 1 str. 16M] gi|263001577|gb|EEZ14152.1| dimethyladenosine transferase [Brucella melitensis bv. 1 str. Rev.1] Length = 276 Score = 37.9 bits (87), Expect = 2.3, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 19/45 (42%) Query: 46 GAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQA 90 G GG +R+ G+ V A++RD + E Y + + Sbjct: 56 GPGGLTRALLAQGAYVTAIERDDRCLEALAEIAAHYPGRLRIIAG 100 >gi|302036875|ref|YP_003797197.1| putative dihydroneopterin aldolase and SAM-dependent methyltransferase [Candidatus Nitrospira defluvii] gi|190343289|gb|ACE75677.1| putative dihydroneopterin aldolase/SAM-dependent methyltransferase [Candidatus Nitrospira defluvii] gi|300604939|emb|CBK41272.1| putative Dihydroneopterin aldolase and SAM-dependent methyltransferase (modular protein) [Candidatus Nitrospira defluvii] Length = 309 Score = 37.9 bits (87), Expect = 2.3, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 22/49 (44%) Query: 32 LNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRD 80 L P +LD G G ++ G V A+DRD A++ +E + Sbjct: 136 LGRLPKGRVLDVAAGRGRHALHLLSHGMEVEAIDRDSLALTALKEAAEE 184 >gi|156937691|ref|YP_001435487.1| Fmu (Sun) domain-containing protein [Ignicoccus hospitalis KIN4/I] gi|156566675|gb|ABU82080.1| Fmu (Sun) domain protein [Ignicoccus hospitalis KIN4/I] Length = 385 Score = 37.9 bits (87), Expect = 2.3, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 3/67 (4%) Query: 33 NPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQ 89 P +++D GG ++ + VIA D +S E MR F + + Sbjct: 200 ALEPEGLVVDMNAAPGGKAFHAYELLRGKGKVIAFDISKKRISKMMEEMRRLGHSFEVVR 259 Query: 90 ATFSQLQ 96 A L Sbjct: 260 ADSRYLD 266 >gi|21242447|ref|NP_642029.1| biotin synthesis protein [Xanthomonas axonopodis pv. citri str. 306] gi|21107892|gb|AAM36565.1| biotin synthesis protein [Xanthomonas axonopodis pv. citri str. 306] Length = 232 Score = 37.9 bits (87), Expect = 2.3, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 43/104 (41%), Gaps = 9/104 (8%) Query: 15 HTIGDHVPVLLEKVIALLNPAP----GKVILDATFGAGGYSRSFCKMGSN-VIALDRDPF 69 + H PV+L + A+L P G+ +LDA G+G Y + G+ V +D P Sbjct: 20 YPPHAHNPVMLAEERAMLALMPSSLQGQHVLDAGCGSGRYMLHALRRGARQVTGVDLSPQ 79 Query: 70 AVSCGQETMRD--YKEQFSLFQATFSQ--LQDYVPDKGVDGVVF 109 + + + L Q + Q L D V D V G+V Sbjct: 80 MLHRAGAELAQDWPAARIVLQQGSLDQLPLADTVADLSVCGLVL 123 >gi|14590866|ref|NP_142938.1| hypothetical protein PH1028 [Pyrococcus horikoshii OT3] gi|3257442|dbj|BAA30125.1| 281aa long hypothetical protein [Pyrococcus horikoshii OT3] Length = 281 Score = 37.9 bits (87), Expect = 2.3, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 4/86 (4%) Query: 29 IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCG----QETMRDYKEQ 84 + + P G+V+LD G G + K G+ VI +++DP + + Sbjct: 118 VNTVKPREGEVVLDTCMGLGYTAIESAKRGARVITIEKDPNVIELAKINPWSRELFESPK 177 Query: 85 FSLFQATFSQLQDYVPDKGVDGVVFD 110 + Q L D+ D ++ D Sbjct: 178 IKILQGDSFDLIKKFEDESFDVIIHD 203 >gi|330444964|ref|ZP_08308618.1| ribosomal protein L11 methyltransferase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328493082|dbj|GAA03115.1| ribosomal protein L11 methyltransferase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 294 Score = 37.9 bits (87), Expect = 2.3, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 15/89 (16%) Query: 28 VIALLNPAP--GKVILDATFGAGGYSRSF--CKMGS-NVIALDRDPFAVSCGQETMRDYK 82 + L+ GK I+D FG G + K+G+ VI +D DP A+ ++ Sbjct: 149 CLEWLDGQDLTGKTIID--FGCGSGILAIAALKLGAAKVIGIDIDPQAILASRDNAER-- 204 Query: 83 EQFSLFQATFSQLQDYVPDKGVDGVVFDL 111 L+ Y+P +G+ D+ Sbjct: 205 ------NGVSENLELYLPKDQPEGIQADI 227 >gi|315635055|ref|ZP_07890336.1| RNA methyltransferase Sun [Aggregatibacter segnis ATCC 33393] gi|315476317|gb|EFU67068.1| RNA methyltransferase Sun [Aggregatibacter segnis ATCC 33393] Length = 453 Score = 37.9 bits (87), Expect = 2.3, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 2/82 (2%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88 LL P +VILDA GG + ++ +V+ALD + + +E + ++Q ++ Sbjct: 250 LLQPQNHEVILDACAAPGGKTTHILELAPQADVMALDVEENRLQRVKENLARMQQQATVV 309 Query: 89 QATFSQLQDYVPDKGVDGVVFD 110 + Q ++ G V FD Sbjct: 310 CGDAANPQAWLDKLGKSAVRFD 331 >gi|28316390|dbj|BAC56939.1| glycine sarcosine N-methyltransferase [Aphanothece halophytica] Length = 265 Score = 37.9 bits (87), Expect = 2.3, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 38/96 (39%), Gaps = 3/96 (3%) Query: 29 IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLF 88 I L K +LDA G G +S + G +V ++D + E + Sbjct: 54 IKTLKEHGAKRVLDAATGTGFHSIRLIEAGFDVASVDGSVEMLVKAFENATRKDQILRTV 113 Query: 89 QATFSQLQDYVPDKGVDGVVFDLGVS-SMQIDCGDR 123 + + Q+ ++ ++ D V+ LG S + DR Sbjct: 114 HSDWRQVTRHIQER-FDAVIC-LGNSFTHLFSEEDR 147 >gi|317507641|ref|ZP_07965353.1| methyltransferase domain-containing protein [Segniliparus rugosus ATCC BAA-974] gi|316254078|gb|EFV13436.1| methyltransferase domain-containing protein [Segniliparus rugosus ATCC BAA-974] Length = 200 Score = 37.9 bits (87), Expect = 2.3, Method: Composition-based stats. Identities = 20/102 (19%), Positives = 35/102 (34%), Gaps = 5/102 (4%) Query: 25 LEKVIALLNPAPG---KVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81 L +++ P LD G G + + G V +D P A+ + Sbjct: 28 LAELVDGDGERPALAPGRALDVGCGTGDAAIYLARRGWRVTGVDFTPKALRLARRKAASA 87 Query: 82 KEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDR 123 A ++L++ G D +V D G+ +D R Sbjct: 88 GADIDFVHADVTKLRENGLQPGFDLIV-DFGLL-HGVDDKTR 127 >gi|299531915|ref|ZP_07045315.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Comamonas testosteroni S44] gi|298720090|gb|EFI61047.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Comamonas testosteroni S44] Length = 475 Score = 37.9 bits (87), Expect = 2.3, Method: Composition-based stats. Identities = 26/136 (19%), Positives = 45/136 (33%), Gaps = 17/136 (12%) Query: 50 YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVF 109 ++R D + + + DYK + QATF QL G Sbjct: 332 HARHILLTVG-------DGMTEAQAAKRLEDYKRRVEAGQATFQQLAQEFSKDGSARNGG 384 Query: 110 DLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVK--DLTRILGILGEEK 167 DLG SS + L+ G ++ VV++ V L E+ Sbjct: 385 DLGWSSPGQFVPE------FERVLENL--QPGQISNPVVSRFGVHLIQLIERRQEKLTER 436 Query: 168 QASRIAHAIVKRRQSA 183 + + +V+ R++ Sbjct: 437 EQREMVRNVVRERKAE 452 >gi|270157755|ref|ZP_06186412.1| ribosomal RNA small subunit methyltransferase B [Legionella longbeachae D-4968] gi|289163976|ref|YP_003454114.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Legionella longbeachae NSW150] gi|269989780|gb|EEZ96034.1| ribosomal RNA small subunit methyltransferase B [Legionella longbeachae D-4968] gi|288857149|emb|CBJ10965.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Legionella longbeachae NSW150] Length = 458 Score = 37.9 bits (87), Expect = 2.4, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 3/87 (3%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCGQETMRDYKEQFSL 87 LL+ PG +LDA GG + + ++ +A+D D + +E + +L Sbjct: 263 LLSLKPGLRVLDACCAPGGKTCHILEKEPHLAECVAVDIDSKRLDRVRENLNRLHLHATL 322 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGVS 114 Q S + K D ++ D S Sbjct: 323 LQGDASNPSQWWDGKLFDRILLDAPCS 349 >gi|227510589|ref|ZP_03940638.1| rRNA methylase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190241|gb|EEI70308.1| rRNA methylase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 191 Score = 37.9 bits (87), Expect = 2.4, Method: Composition-based stats. Identities = 18/112 (16%), Positives = 42/112 (37%), Gaps = 14/112 (12%) Query: 9 MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65 M+ + H LL++ ++ G ++D T G G + K+ V D Sbjct: 1 MNQLPNALQFSHQ--LLKEAVS-----TGDQVIDGTIGNGNDTLLLAKLVGENGTVYGFD 53 Query: 66 RDPFAVSCGQETMRDYKE---QFSLFQATFSQLQDYVPDK-GVDGVVFDLGV 113 A+ ++ L++ + +++ + + D + +F+LG Sbjct: 54 IQQQALQHTISLLKKNLSSLQNVQLYKKSHAEIDNILDDNVRISAAIFNLGY 105 >gi|126651273|ref|ZP_01723480.1| SAM-dependent methyltransferase [Bacillus sp. B14905] gi|126591802|gb|EAZ85885.1| SAM-dependent methyltransferase [Bacillus sp. B14905] Length = 192 Score = 37.9 bits (87), Expect = 2.4, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 13/96 (13%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMR 79 LL+ + G ++DAT G G+ F V A D AV + Sbjct: 13 LLKDSVE-----EGDAVVDATAGN-GHDTLFLAQLVGDEGQVYAFDVQKEAVDATLHRLL 66 Query: 80 DYK--EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 D+ + + ++ ++V V +F+LG Sbjct: 67 DHGLEHRVLVLNKGHEEVANFVHK-KVAAAIFNLGY 101 >gi|332139428|ref|YP_004425166.1| 16S rRNA methyltransferase B [Alteromonas macleodii str. 'Deep ecotype'] gi|327549450|gb|AEA96168.1| 16S rRNA methyltransferase B [Alteromonas macleodii str. 'Deep ecotype'] Length = 439 Score = 37.9 bits (87), Expect = 2.4, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 3/88 (3%) Query: 30 ALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETMRDYKEQFS 86 L P + ILD GG + + + V+ALD D + +E M + + Sbjct: 244 HYLQPQANERILDCCAAPGGKTGHIVECAPDTEYVLALDADATRLKRVEENMTRLQHKVD 303 Query: 87 LFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + Q + + + K D ++ D S Sbjct: 304 IRQGDAANPESWWDGKPFDRILLDAPCS 331 >gi|225022944|ref|ZP_03712136.1| hypothetical protein CORMATOL_02990 [Corynebacterium matruchotii ATCC 33806] gi|305681942|ref|ZP_07404746.1| putative site-specific DNA-methyltransferase (adenine-specific) [Corynebacterium matruchotii ATCC 14266] gi|224944167|gb|EEG25376.1| hypothetical protein CORMATOL_02990 [Corynebacterium matruchotii ATCC 33806] gi|305658415|gb|EFM47918.1| putative site-specific DNA-methyltransferase (adenine-specific) [Corynebacterium matruchotii ATCC 14266] Length = 571 Score = 37.9 bits (87), Expect = 2.4, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 20/49 (40%) Query: 60 NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVV 108 +I D D AV + +RD + Q F Q +P VD ++ Sbjct: 73 KLIGYDIDAAAVEQARARLRDVNRDAQVIQGDFLLHQRNLPTHSVDIII 121 >gi|23010583|ref|ZP_00051221.1| COG0030: Dimethyladenosine transferase (rRNA methylation) [Magnetospirillum magnetotacticum MS-1] Length = 263 Score = 37.9 bits (87), Expect = 2.4, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%) Query: 46 GAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSLF 88 G GG +R+ G+ V+A++RDP A+ E Y + + Sbjct: 34 GPGGLTRALLAAGAQRVVAIERDPRALPALAEIAAHYPGRLDVI 77 >gi|193786198|dbj|BAG51481.1| unnamed protein product [Homo sapiens] Length = 566 Score = 37.9 bits (87), Expect = 2.4, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 2/61 (3%) Query: 46 GAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQDYVPDKG 103 G GG + F G VIA+D DP ++ + Y ++ F L ++ Sbjct: 413 GVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADV 472 Query: 104 V 104 V Sbjct: 473 V 473 >gi|154253151|ref|YP_001413975.1| type 11 methyltransferase [Parvibaculum lavamentivorans DS-1] gi|154157101|gb|ABS64318.1| Methyltransferase type 11 [Parvibaculum lavamentivorans DS-1] Length = 219 Score = 37.9 bits (87), Expect = 2.4, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 35/98 (35%), Gaps = 12/98 (12%) Query: 21 VPVLLEK------VIALLNPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFA 70 + V+ + V+ L G+ ++D GAG S++ G +I +D DP Sbjct: 23 IAVMTREKRWRPLVVNALALQTGETVVD--IGAGTGSQAILLKQAVPGIRIIGIDPDPDV 80 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVV 108 ++ + + Q + + D VV Sbjct: 81 LAIARAKAEAAAVEVDWRQGFGDEADQIAGSEIADAVV 118 >gi|75910273|ref|YP_324569.1| MerR family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75703998|gb|ABA23674.1| putative MerR-family transcriptional regulator [Anabaena variabilis ATCC 29413] Length = 260 Score = 37.9 bits (87), Expect = 2.4, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 84/224 (37%), Gaps = 19/224 (8%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84 + +I LLN G VI D G GGYS + G V A++ P V Q + E Sbjct: 22 VNAIINLLNLPKGSVIADIGAGTGGYSVALANQGLFVYAVE--PSIVMRQQAVVHPQVEW 79 Query: 85 FSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ------KSGPLDMRMS 138 F+ + + +PDK VDGV+ L + ++ SFQ + G + + Sbjct: 80 FTGYAENLA-----LPDKSVDGVISILAI--HHFSHLEK--SFQEMQRIIRDGTIVLLTF 130 Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198 ++ + L L ++Q + + +R ++ PF DLS L Sbjct: 131 DIRLAQRIWLYDYFPFLWEDALRFLPLDEQINLLQENTKRRVEAIPFLLPHDLSDLFAAA 190 Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242 + + R+ + N ++ + +GL L G Sbjct: 191 AWRRPELYLKAEVRAGISSFALANQDL--VEKGLELLTADLNNG 232 >gi|293570978|ref|ZP_06682021.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium E980] gi|291608904|gb|EFF38183.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium E980] Length = 460 Score = 37.9 bits (87), Expect = 2.4, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 21/99 (21%) Query: 24 LLEKVIALLNPAPGKVILD-----ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETM 78 L + I L+ P + I+D T G S K V +D P A++ ++ Sbjct: 300 LYGEGIKALDVQPNETIVDAYCGVGTIG-----LSVAKQAKEVRGMDTVPQAIADAKKN- 353 Query: 79 RDYKEQFSLFQATF--SQLQDYVPDK-----GVDGVVFD 110 E+ + + +P DG++ D Sbjct: 354 ---AERLGYHNTRYEVGTAEQVLPKWLNEGFQPDGIIVD 389 >gi|293553261|ref|ZP_06673898.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium E1039] gi|291602671|gb|EFF32886.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium E1039] Length = 460 Score = 37.9 bits (87), Expect = 2.4, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 21/99 (21%) Query: 24 LLEKVIALLNPAPGKVILD-----ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETM 78 L + I L+ P + I+D T G S K V +D P A++ ++ Sbjct: 300 LYGEGIKALDVQPNETIVDAYCGVGTIG-----LSVAKQAKEVRGMDTVPQAIADAKKN- 353 Query: 79 RDYKEQFSLFQATF--SQLQDYVPDK-----GVDGVVFD 110 E+ + + +P DG++ D Sbjct: 354 ---AERLGYHNTRYEVGTAEQVLPKWLNEGFQPDGIIVD 389 >gi|294619066|ref|ZP_06698561.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium E1679] gi|291594727|gb|EFF26109.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium E1679] Length = 460 Score = 37.9 bits (87), Expect = 2.4, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 21/99 (21%) Query: 24 LLEKVIALLNPAPGKVILD-----ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETM 78 L + I L+ P + I+D T G S K V +D P A++ ++ Sbjct: 300 LYGEGIKALDVQPNETIVDAYCGVGTIG-----LSVAKQAKEVRGMDTVPQAIADAKKN- 353 Query: 79 RDYKEQFSLFQATF--SQLQDYVPDK-----GVDGVVFD 110 E+ + + +P DG++ D Sbjct: 354 ---AERLGYHNTRYEVGTAEQVLPKWLNEGFQPDGIIVD 389 >gi|126657694|ref|ZP_01728848.1| ribosomal protein L11 methyltransferase [Cyanothece sp. CCY0110] gi|126620911|gb|EAZ91626.1| ribosomal protein L11 methyltransferase [Cyanothece sp. CCY0110] Length = 299 Score = 37.9 bits (87), Expect = 2.4, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 4/59 (6%) Query: 53 SFCKMGSNVIALDRDPFAVSCGQETM---RDYKEQFSLFQATFSQLQDYVPDKGVDGVV 108 + S A+D DP AV +E + + + + Q + S+L + V D GVDG+V Sbjct: 173 AILLGASKAYAVDIDPLAVKAARENRHLNQIHPDHLVINQGSLSELLELVND-GVDGIV 230 >gi|69248258|ref|ZP_00604692.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium DO] gi|257880209|ref|ZP_05659862.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium 1,230,933] gi|257883010|ref|ZP_05662663.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium 1,231,502] gi|257891407|ref|ZP_05671060.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium 1,231,410] gi|257893596|ref|ZP_05673249.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium 1,231,408] gi|258614397|ref|ZP_05712167.1| RNA methyltransferase [Enterococcus faecium DO] gi|260560493|ref|ZP_05832667.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium C68] gi|289565178|ref|ZP_06445630.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium D344SRF] gi|293563312|ref|ZP_06677762.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium E1162] gi|293569307|ref|ZP_06680605.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium E1071] gi|294614976|ref|ZP_06694865.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium E1636] gi|294621465|ref|ZP_06700634.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium U0317] gi|314939803|ref|ZP_07847023.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium TX0133a04] gi|314943901|ref|ZP_07850627.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium TX0133C] gi|314949998|ref|ZP_07853291.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium TX0082] gi|314953520|ref|ZP_07856432.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium TX0133A] gi|314994278|ref|ZP_07859580.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium TX0133B] gi|314995146|ref|ZP_07860262.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium TX0133a01] gi|68194473|gb|EAN08972.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium DO] gi|257814437|gb|EEV43195.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium 1,230,933] gi|257818668|gb|EEV45996.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium 1,231,502] gi|257827767|gb|EEV54393.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium 1,231,410] gi|257829975|gb|EEV56582.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium 1,231,408] gi|260073495|gb|EEW61823.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium C68] gi|289162999|gb|EFD10847.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium D344SRF] gi|291588013|gb|EFF19863.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium E1071] gi|291592107|gb|EFF23727.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium E1636] gi|291598959|gb|EFF30007.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium U0317] gi|291604764|gb|EFF34248.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium E1162] gi|313590637|gb|EFR69482.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium TX0133a01] gi|313591313|gb|EFR70158.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium TX0133B] gi|313594443|gb|EFR73288.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium TX0133A] gi|313597442|gb|EFR76287.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium TX0133C] gi|313640943|gb|EFS05523.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium TX0133a04] gi|313643645|gb|EFS08225.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium TX0082] Length = 460 Score = 37.9 bits (87), Expect = 2.4, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 21/99 (21%) Query: 24 LLEKVIALLNPAPGKVILD-----ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETM 78 L + I L+ P + I+D T G S K V +D P A++ ++ Sbjct: 300 LYGEGIKALDVQPNETIVDAYCGVGTIG-----LSVAKQAKEVRGMDTVPQAIADAKKN- 353 Query: 79 RDYKEQFSLFQATF--SQLQDYVPDK-----GVDGVVFD 110 E+ + + +P DG++ D Sbjct: 354 ---AERLGYHNTRYEVGTAEQVLPKWLNEGFQPDGIIVD 389 >gi|315023501|gb|EFT36507.1| ribosomal RNA small subunit methyltransferase B [Riemerella anatipestifer RA-YM] Length = 402 Score = 37.9 bits (87), Expect = 2.5, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 7/91 (7%) Query: 30 ALLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFS 86 L G ++DA GAGG + + K +IALD + ++ + + Sbjct: 218 HFLEVKEGMRVVDACAGAGGKTLHIAALMKNKGQIIALDIFEWKLAELKRRAKRAGA--H 275 Query: 87 LFQATFSQLQDYVPD--KGVDGVVFDLGVSS 115 + F + + + D ++ D+ S Sbjct: 276 NIETRFIEDNKVIKRLHEKADRLLLDVPCSG 306 >gi|313207277|ref|YP_004046454.1| fmu (sun) domain protein [Riemerella anatipestifer DSM 15868] gi|312446593|gb|ADQ82948.1| Fmu (Sun) domain protein [Riemerella anatipestifer DSM 15868] Length = 402 Score = 37.9 bits (87), Expect = 2.5, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 7/91 (7%) Query: 30 ALLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFS 86 L G ++DA GAGG + + K +IALD + ++ + + Sbjct: 218 HFLEVKEGMRVVDACAGAGGKTLHIAALMKNKGQIIALDIFEWKLAELKRRAKRAGA--H 275 Query: 87 LFQATFSQLQDYVPD--KGVDGVVFDLGVSS 115 + F + + + D ++ D+ S Sbjct: 276 NIETRFIEDNKVIKRLHEKADRLLLDVPCSG 306 >gi|114763426|ref|ZP_01442833.1| protein-L-isoaspartate O-methyltransferase [Pelagibaca bermudensis HTCC2601] gi|114543964|gb|EAU46975.1| protein-L-isoaspartate O-methyltransferase [Roseovarius sp. HTCC2601] Length = 216 Score = 37.9 bits (87), Expect = 2.5, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 47/108 (43%), Gaps = 14/108 (12%) Query: 25 LEKVIALLNPAPGKVILDATFGAG-GYSRS-FCKMGSNVIALDRDPFAVSCGQETMRDYK 82 L K++ +N ++LD GAG GYS + ++ V+A++ D S Q + ++ Sbjct: 67 LAKMLDAVNIDNDDLVLD--IGAGFGYSSAVIARIAEAVVAVEEDEAFTSEAQSLLVEHG 124 Query: 83 EQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVS------SMQIDCGDR 123 + + L + G D +V + GV+ + Q+ G R Sbjct: 125 DNVVFHEG---ALAQGAAEHGPYDAIVIEGGVAQLPEEITAQLKDGGR 169 >gi|170718224|ref|YP_001785246.1| sun protein [Haemophilus somnus 2336] gi|168826353|gb|ACA31724.1| sun protein [Haemophilus somnus 2336] Length = 462 Score = 37.9 bits (87), Expect = 2.5, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 3/92 (3%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQFSLF 88 LL P ++ILDA GG + + N VIALD +P + +E + K+Q + Sbjct: 255 LLEPENDELILDACAAPGGKTTHILEQAPNAKVIALDIEPARLQRVKENLVRMKQQAIII 314 Query: 89 QATFSQLQDYVPDKGVDGVVFDLGV-SSMQID 119 +Q + ++ + + + S++Q D Sbjct: 315 CGDATQPEQWLSEIDFNAIGLTFKSESAVQFD 346 >gi|326629015|gb|EGE35358.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 437 Score = 37.9 bits (87), Expect = 2.6, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 3/90 (3%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET-MRDYK 82 ++ + + L+ +LD G G ++ ++VI ++ P V G+E +R+ Sbjct: 279 MVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVIGVEGVPALVEKGRENAIRNGL 338 Query: 83 EQFSLFQATFSQ--LQDYVPDKGVDGVVFD 110 + F + + G D V+ D Sbjct: 339 HNVTFFHENLEEDVTKQPWAKNGFDKVLLD 368 >gi|326624695|gb|EGE31040.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 437 Score = 37.9 bits (87), Expect = 2.6, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 3/90 (3%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET-MRDYK 82 ++ + + L+ +LD G G ++ ++VI ++ P V G+E +R+ Sbjct: 279 MVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVIGVEGVPALVEKGRENAIRNGL 338 Query: 83 EQFSLFQATFSQ--LQDYVPDKGVDGVVFD 110 + F + + G D V+ D Sbjct: 339 HNVTFFHENLEEEVTKQPWAKNGFDKVLLD 368 >gi|323131314|gb|ADX18744.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 437 Score = 37.9 bits (87), Expect = 2.6, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 3/90 (3%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET-MRDYK 82 ++ + + L+ +LD G G ++ ++VI ++ P V G+E +R+ Sbjct: 279 MVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVIGVEGVPALVEKGRENAIRNGL 338 Query: 83 EQFSLFQATFSQ--LQDYVPDKGVDGVVFD 110 + F + + G D V+ D Sbjct: 339 HNVTFFHENLEEDVTKQPWAKNGFDKVLLD 368 >gi|258592639|emb|CBE68948.1| Sun protein [NC10 bacterium 'Dutch sediment'] Length = 467 Score = 37.9 bits (87), Expect = 2.6, Method: Composition-based stats. Identities = 32/102 (31%), Positives = 43/102 (42%), Gaps = 19/102 (18%) Query: 22 PVLLEKVIALLNPAPGKVILDATFGAGGYS---RSFCKMGSNVIALDRDPFAVSCGQETM 78 PVL +LNP PG V+LDA G GG + VIAL DP A + Sbjct: 263 PVL------MLNPQPGDVVLDACSGGGGKTALLLGRLGGQGRVIAL--DPSAR--AHRRL 312 Query: 79 RDYKEQFSL-----FQATFSQLQDYVPDKGVDGVVFDLGVSS 115 R+ + + SL QA Q + + VD ++ D S Sbjct: 313 REARTRLSLDRVFPVQADARQAAQ-LFTRQVDRILVDAPCSG 353 >gi|295676911|ref|YP_003605435.1| hypothetical protein BC1002_1861 [Burkholderia sp. CCGE1002] gi|295436754|gb|ADG15924.1| conserved hypothetical protein [Burkholderia sp. CCGE1002] Length = 200 Score = 37.9 bits (87), Expect = 2.6, Method: Composition-based stats. Identities = 17/38 (44%), Positives = 23/38 (60%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAV 71 APG +LD GAG ++R F +G V A+DRD A+ Sbjct: 26 IAPGGAVLDVASGAGRHARFFASLGHPVTAIDRDAAAL 63 >gi|197247468|ref|YP_002147867.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197211171|gb|ACH48568.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 431 Score = 37.9 bits (87), Expect = 2.6, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 3/90 (3%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET-MRDYK 82 ++ + + L+ +LD G G ++ ++VI ++ P V G+E +R+ Sbjct: 273 MVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVIGVEGVPALVEKGRENAIRNGL 332 Query: 83 EQFSLFQATFSQ--LQDYVPDKGVDGVVFD 110 + F + + G D V+ D Sbjct: 333 HNVTFFHENLEEDVTKQPWAKNGFDKVLLD 362 >gi|254245217|ref|ZP_04938539.1| hypothetical protein PA2G_06108 [Pseudomonas aeruginosa 2192] gi|126198595|gb|EAZ62658.1| hypothetical protein PA2G_06108 [Pseudomonas aeruginosa 2192] Length = 450 Score = 37.9 bits (87), Expect = 2.6, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 56/162 (34%), Gaps = 23/162 (14%) Query: 22 PV---LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET- 77 PV ++ + + L P + +LD G G +S + + V+ ++ V Sbjct: 287 PVNESMIRQALDWLAPTADERVLDLFCGLGNFSLPLARRVARVVGVEGVAAMVERAGANA 346 Query: 78 MRDYKEQFSLFQATFSQ-LQDYV-PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + + FQA S+ L + + ++G V+ D R G + Sbjct: 347 LANGLGNAHFFQADLSKALAEALWAEQGFTAVLLD----------PPR------DGAFEA 390 Query: 136 RMSCSGISASDVVN-QANVKDLTRILGILGEEKQASRIAHAI 176 S + A VV N L R G + + + A + Sbjct: 391 VREMSSLGARRVVYVSCNPATLARDAGEMARQGYRLKRAGIL 432 >gi|57238485|ref|YP_179616.1| site-specific DNA methyltransferase, putative [Campylobacter jejuni RM1221] gi|86151925|ref|ZP_01070138.1| site-specific DNA methyltransferase, putative [Campylobacter jejuni subsp. jejuni 260.94] gi|57167289|gb|AAW36068.1| site-specific DNA methyltransferase, putative [Campylobacter jejuni RM1221] gi|85841033|gb|EAQ58282.1| site-specific DNA methyltransferase, putative [Campylobacter jejuni subsp. jejuni 260.94] Length = 228 Score = 37.9 bits (87), Expect = 2.6, Method: Composition-based stats. Identities = 12/92 (13%), Positives = 30/92 (32%), Gaps = 10/92 (10%) Query: 51 SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFD 110 + + A++ D A E ++ + A ++ + + + ++ Sbjct: 101 AEALSNHALKAYAIELDAKAYKIALENAKNIDPNLEVIHANTFEILPKLIENSKNEIILY 160 Query: 111 LGVSSMQIDCGDRGFS------FQKSGPLDMR 136 L D + GFS + LD++ Sbjct: 161 LD---PPFDTRE-GFSDIYEKIYHFLENLDLK 188 >gi|326407755|gb|ADZ64826.1| uracil-5-23S rRNA methyltransferase RumA [Lactococcus lactis subsp. lactis CV56] Length = 513 Score = 37.9 bits (87), Expect = 2.6, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 30/89 (33%), Gaps = 12/89 (13%) Query: 23 VLLEKVIALLNPAPGKVILD-----ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77 VL + + LNP ++D T G + K +V +D P ++ +E Sbjct: 317 VLYGEAVKALNPKKDDRVIDAYCGVGTIGF-----AVAKKVKSVHGMDITPESIFDAREN 371 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGVDG 106 + + + +P+ G Sbjct: 372 AKRLG--LKNCHYEIGKAERIIPNWNKSG 398 >gi|254282952|ref|ZP_04957920.1| ribosomal RNA small subunit methyltransferase B [gamma proteobacterium NOR51-B] gi|219679155|gb|EED35504.1| ribosomal RNA small subunit methyltransferase B [gamma proteobacterium NOR51-B] Length = 416 Score = 37.9 bits (87), Expect = 2.6, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 30/87 (34%), Gaps = 3/87 (3%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCGQETMRDYKEQFSL 87 LL+ PG+ +LDA GG S + + IA D D + F Sbjct: 222 LLDAKPGETVLDACAAPGGKSCHIAERQPELKTLIAADIDAKRLEKVIANRDRLGLGFDC 281 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGVS 114 + D + D +V D+ S Sbjct: 282 IAMDAAHPGDELGVGRFDAIVADVPCS 308 >gi|315124898|ref|YP_004066902.1| site-specific DNA methyltransferase, putative [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315018620|gb|ADT66713.1| site-specific DNA methyltransferase, putative [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315058916|gb|ADT73245.1| Site-specific DNA methyltransferase [Campylobacter jejuni subsp. jejuni S3] Length = 227 Score = 37.9 bits (87), Expect = 2.6, Method: Composition-based stats. Identities = 12/92 (13%), Positives = 30/92 (32%), Gaps = 10/92 (10%) Query: 51 SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFD 110 + + A++ D A E ++ + A ++ + + + ++ Sbjct: 100 AEALSNHALKAYAIELDAKAYKIALENAKNIDPNLEVIHANTFEILPKLIENSKNEIILY 159 Query: 111 LGVSSMQIDCGDRGFS------FQKSGPLDMR 136 L D + GFS + LD++ Sbjct: 160 LD---PPFDTRE-GFSDIYEKIYHFLENLDLK 187 >gi|205356106|ref|ZP_03222873.1| possible DNA methylase [Campylobacter jejuni subsp. jejuni CG8421] gi|205345949|gb|EDZ32585.1| possible DNA methylase [Campylobacter jejuni subsp. jejuni CG8421] Length = 228 Score = 37.9 bits (87), Expect = 2.6, Method: Composition-based stats. Identities = 12/92 (13%), Positives = 30/92 (32%), Gaps = 10/92 (10%) Query: 51 SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFD 110 + + A++ D A E ++ + A ++ + + + ++ Sbjct: 101 AEALSNHALKAYAIELDVKAYKIALENAKNIDPNLEVIHANTFEILPKLIENSKNEIILY 160 Query: 111 LGVSSMQIDCGDRGFS------FQKSGPLDMR 136 L D + GFS + LD++ Sbjct: 161 LD---PPFDTRE-GFSDIYEKIYHFLENLDLK 188 >gi|323450126|gb|EGB06009.1| hypothetical protein AURANDRAFT_16878 [Aureococcus anophagefferens] Length = 101 Score = 37.9 bits (87), Expect = 2.6, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 2/54 (3%) Query: 37 GKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLF 88 G+V++DA G GG + + G+ V+A+D D + + Y ++ Sbjct: 43 GRVVIDAFCGCGGNAIALASEGAWVVAVDVDARKLDMARHNAAIYGVADRIDFV 96 >gi|317470544|ref|ZP_07929932.1| methyltransferase domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|316902059|gb|EFV23985.1| methyltransferase domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 249 Score = 37.9 bits (87), Expect = 2.6, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 2/92 (2%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQA 90 L + +LD G G + ++G +V D + + ++++ L Q Sbjct: 33 LFAENNVQTVLDCACGTGQHLLMLAELGLSVCGSDYSAAMLKAAAVNLEKHRKKIPLHQC 92 Query: 91 TFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGD 122 F QLQ+ + D VV L S + + Sbjct: 93 DFRQLQEAYTE-KFDAVVC-LTTSLPHMHTDE 122 >gi|294852044|ref|ZP_06792717.1| dimethyladenosine transferase [Brucella sp. NVSL 07-0026] gi|294820633|gb|EFG37632.1| dimethyladenosine transferase [Brucella sp. NVSL 07-0026] Length = 276 Score = 37.9 bits (87), Expect = 2.6, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 19/43 (44%) Query: 46 GAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLF 88 G GG +R+ G+ V A++RD + E Y + + Sbjct: 56 GPGGLTRALLAQGAYVTAIERDDRCLEALAEIAAHYPGRLRII 98 >gi|307152137|ref|YP_003887521.1| type 11 methyltransferase [Cyanothece sp. PCC 7822] gi|306982365|gb|ADN14246.1| Methyltransferase type 11 [Cyanothece sp. PCC 7822] Length = 265 Score = 37.9 bits (87), Expect = 2.6, Method: Composition-based stats. Identities = 15/47 (31%), Positives = 23/47 (48%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77 L++ PG+ ILDA G G +S K V+A+D + Q+ Sbjct: 41 LMDIQPGETILDAGCGPGVHSIRLAKKNIKVLAIDISKTMLREAQKR 87 >gi|125625220|ref|YP_001033703.1| putative RNA methyltransferase [Lactococcus lactis subsp. cremoris MG1363] gi|124494028|emb|CAL99028.1| putative RNA methyltransferase [Lactococcus lactis subsp. cremoris MG1363] gi|300072030|gb|ADJ61430.1| putative RNA methyltransferase [Lactococcus lactis subsp. cremoris NZ9000] Length = 513 Score = 37.9 bits (87), Expect = 2.6, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 30/89 (33%), Gaps = 12/89 (13%) Query: 23 VLLEKVIALLNPAPGKVILD-----ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77 VL + + LNP ++D T G + K +V +D P ++ +E Sbjct: 317 VLYGEAVKALNPKKDDRVIDAYCGVGTIGF-----AVAKKVKSVHGMDITPESIFDAREN 371 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGVDG 106 + + + +P+ G Sbjct: 372 AKRLG--LKNCHYEIGKAERIIPNWNKSG 398 >gi|37681321|ref|NP_935930.1| ribosomal protein L11 methyltransferase [Vibrio vulnificus YJ016] gi|38605128|sp|P60094|PRMA_VIBVY RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11 Mtase gi|37200072|dbj|BAC95901.1| ribosomal protein L11 methylase [Vibrio vulnificus YJ016] Length = 295 Score = 37.9 bits (87), Expect = 2.6, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 39/102 (38%), Gaps = 21/102 (20%) Query: 17 IGDH-VPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS------NVIALDRDPF 69 G H L + + L+ GK ++D FG G + + VI +D DP Sbjct: 140 TGTHPTTALCLEWLEGLDL-SGKTVID--FGCG---SGILAIAAIKLGAEKVIGIDIDPQ 193 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDL 111 A+ ++ + QL Y+P +G++ D+ Sbjct: 194 ALLASKDNAQR--------NGVADQLDVYLPQDQPEGLLADV 227 >gi|307262046|ref|ZP_07543700.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306868225|gb|EFN00048.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 432 Score = 37.9 bits (87), Expect = 2.6, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 6/83 (7%) Query: 30 ALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSL 87 ALL G++ILDA GG + ++ VIALD + + +E + + ++ Sbjct: 240 ALLEAQNGELILDACAAPGGKTTHILEVAPQAKVIALDIEESRLKRVRENLARLGQTATV 299 Query: 88 FQATFSQLQDYVPDKGVDGVVFD 110 S+ +++ DGV+FD Sbjct: 300 ICGDASKPAEWLD----DGVMFD 318 >gi|281492836|ref|YP_003354816.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactococcus lactis subsp. lactis KF147] gi|281376488|gb|ADA65974.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactococcus lactis subsp. lactis KF147] Length = 513 Score = 37.9 bits (87), Expect = 2.6, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 30/89 (33%), Gaps = 12/89 (13%) Query: 23 VLLEKVIALLNPAPGKVILD-----ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77 VL + + LNP ++D T G + K +V +D P ++ +E Sbjct: 317 VLYGEAVKALNPKKDDRVIDAYCGVGTIGF-----AVAKKVKSVHGMDITPESIFDAREN 371 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGVDG 106 + + + +P+ G Sbjct: 372 AKRLG--LKNCHYEIGKAERIIPNWNKSG 398 >gi|205353903|ref|YP_002227704.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205273684|emb|CAR38674.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] Length = 431 Score = 37.9 bits (87), Expect = 2.6, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 3/90 (3%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET-MRDYK 82 ++ + + L+ +LD G G ++ ++VI ++ P V G+E +R+ Sbjct: 273 MVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVIGVEGVPALVEKGRENAIRNGL 332 Query: 83 EQFSLFQATFSQ--LQDYVPDKGVDGVVFD 110 + F + + G D V+ D Sbjct: 333 HNVTFFHENLEEDVTKQPWAKNGFDKVLLD 362 >gi|242237890|ref|YP_002986071.1| 16S rRNA methyltransferase B [Dickeya dadantii Ech703] gi|242129947|gb|ACS84249.1| sun protein [Dickeya dadantii Ech703] Length = 431 Score = 37.9 bits (87), Expect = 2.7, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 37/86 (43%), Gaps = 2/86 (2%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88 L+P + ILD GG + ++ V+A+D D ++ +E ++ ++ + Sbjct: 241 WLDPQNNEDILDLCAAPGGKTTHILEIAPKARVLAVDVDEHRLARVKENLQRLRQHADVR 300 Query: 89 QATFSQLQDYVPDKGVDGVVFDLGVS 114 Q +++ D D ++ D S Sbjct: 301 QGDGRVPEEWCGDSQFDRILLDAPCS 326 >gi|168242718|ref|ZP_02667650.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194447436|ref|YP_002046926.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|238909737|ref|ZP_04653574.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|194405740|gb|ACF65959.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205338177|gb|EDZ24941.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 431 Score = 37.9 bits (87), Expect = 2.7, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 3/90 (3%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET-MRDYK 82 ++ + + L+ +LD G G ++ ++VI ++ P V G+E +R+ Sbjct: 273 MVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVIGVEGVPALVEKGRENAIRNGL 332 Query: 83 EQFSLFQATFSQ--LQDYVPDKGVDGVVFD 110 + F + + G D V+ D Sbjct: 333 HNVTFFHENLEEDVTKQPWAKNGFDKVLLD 362 >gi|198244789|ref|YP_002216931.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197939305|gb|ACH76638.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] Length = 431 Score = 37.9 bits (87), Expect = 2.7, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 3/90 (3%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET-MRDYK 82 ++ + + L+ +LD G G ++ ++VI ++ P V G+E +R+ Sbjct: 273 MVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVIGVEGVPALVEKGRENAIRNGL 332 Query: 83 EQFSLFQATFSQ--LQDYVPDKGVDGVVFD 110 + F + + G D V+ D Sbjct: 333 HNVTFFHENLEEEVTKQPWAKNGFDKVLLD 362 >gi|16766263|ref|NP_461878.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167550177|ref|ZP_02343934.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167993449|ref|ZP_02574543.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|197265036|ref|ZP_03165110.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|207858223|ref|YP_002244874.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|20140074|sp|Q8ZME1|RUMA_SALTY RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|16421508|gb|AAL21837.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|197243291|gb|EDY25911.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205324674|gb|EDZ12513.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205328450|gb|EDZ15214.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|206710026|emb|CAR34381.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261248093|emb|CBG25928.1| Uracil-5--methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267995093|gb|ACY89978.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159518|emb|CBW19037.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913979|dbj|BAJ37953.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321225637|gb|EFX50691.1| 23S rRNA Uracil-5- -methyltransferase RumA [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|332989828|gb|AEF08811.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 431 Score = 37.9 bits (87), Expect = 2.7, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 3/90 (3%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET-MRDYK 82 ++ + + L+ +LD G G ++ ++VI ++ P V G+E +R+ Sbjct: 273 MVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVIGVEGVPALVEKGRENAIRNGL 332 Query: 83 EQFSLFQATFSQ--LQDYVPDKGVDGVVFD 110 + F + + G D V+ D Sbjct: 333 HNVTFFHENLEEDVTKQPWAKNGFDKVLLD 362 >gi|15674161|ref|NP_268336.1| hypothetical protein L37880 [Lactococcus lactis subsp. lactis Il1403] gi|50401786|sp|Q9CDP0|YWFF_LACLA RecName: Full=Uncharacterized RNA methyltransferase ywfF gi|12725241|gb|AAK06277.1|AE006446_9 hypothetical protein L37880 [Lactococcus lactis subsp. lactis Il1403] Length = 513 Score = 37.9 bits (87), Expect = 2.7, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 30/89 (33%), Gaps = 12/89 (13%) Query: 23 VLLEKVIALLNPAPGKVILD-----ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77 VL + + LNP ++D T G + K +V +D P ++ +E Sbjct: 317 VLYGEAVKALNPKKDDRVIDAYCGVGTIGF-----AVAKKVKSVHGMDITPESIFDAREN 371 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGVDG 106 + + + +P+ G Sbjct: 372 AKRLG--LKNCHYEIGKAERIIPNWNKSG 398 >gi|300709794|ref|YP_003735608.1| hypothetical protein HacjB3_02115 [Halalkalicoccus jeotgali B3] gi|299123477|gb|ADJ13816.1| hypothetical protein HacjB3_02115 [Halalkalicoccus jeotgali B3] Length = 318 Score = 37.9 bits (87), Expect = 2.7, Method: Composition-based stats. Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 3/88 (3%) Query: 24 LLEKVIALLNPA-PGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82 LL + IA + A PG ILD G GG G+ VI D +E + Y Sbjct: 163 LLARAIANIAGAGPGATILDPMCGTGGVLVEAGLAGARVIGADAQWKMTHGARENLAHYD 222 Query: 83 EQFSLFQATFSQLQDYVPDKGVDGVVFD 110 +F LF+ +++ + D +DGVVFD Sbjct: 223 VEFDLFRGDATRIP--LRDGTIDGVVFD 248 >gi|294141950|ref|YP_003557928.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Shewanella violacea DSS12] gi|293328419|dbj|BAJ03150.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Shewanella violacea DSS12] Length = 453 Score = 37.9 bits (87), Expect = 2.7, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 4/90 (4%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCG--QETMRDY 81 ++ + + L+ P + +LD G G +S K G++VI ++ P V T+ Sbjct: 294 MVNQAVDWLSVEPHERVLDLFCGVGNFSLPLAKKGASVIGVEGVPEMVQQAKLNATLSQL 353 Query: 82 KEQFSLFQATFS-QLQDYVPDKGVDGVVFD 110 + S F S L VD ++ D Sbjct: 354 -DNVSFFHTDLSADLSKESWLGKVDKLLLD 382 >gi|170746986|ref|YP_001753246.1| dimethyladenosine transferase [Methylobacterium radiotolerans JCM 2831] gi|226732597|sp|B1LVB8|RSMA_METRJ RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|170653508|gb|ACB22563.1| dimethyladenosine transferase [Methylobacterium radiotolerans JCM 2831] Length = 292 Score = 37.9 bits (87), Expect = 2.7, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%) Query: 46 GAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSLF 88 G GG +R+ G+ V+A++RDP A+ E Y + + Sbjct: 57 GPGGLTRALLAEGAARVVAIERDPRALPALAEIAAHYPGRLEVV 100 >gi|161615885|ref|YP_001589850.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161365249|gb|ABX69017.1| hypothetical protein SPAB_03678 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 431 Score = 37.9 bits (87), Expect = 2.7, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 3/90 (3%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET-MRDYK 82 ++ + + L+ +LD G G ++ ++VI ++ P V G+E +R+ Sbjct: 273 MVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVIGVEGVPALVEKGRENAIRNGL 332 Query: 83 EQFSLFQATFSQ--LQDYVPDKGVDGVVFD 110 + F + + G D V+ D Sbjct: 333 HNVTFFHENLEEDVTKQPWAKNGFDKVLLD 362 >gi|170739290|ref|YP_001767945.1| Fmu (Sun) domain-containing protein [Methylobacterium sp. 4-46] gi|168193564|gb|ACA15511.1| Fmu (Sun) domain protein [Methylobacterium sp. 4-46] Length = 437 Score = 37.9 bits (87), Expect = 2.7, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 3/51 (5%) Query: 35 APGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDYK 82 PG+ ++D G GG + + + ++A D DP ++ E +R Sbjct: 229 RPGETVIDLCAGGGGKTLALAALIANRGRLVATDGDPRRLAPIHERLRRAG 279 >gi|116513129|ref|YP_812036.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactococcus lactis subsp. cremoris SK11] gi|116108783|gb|ABJ73923.1| 23S rRNA m(5)U-1939 methyltransferase [Lactococcus lactis subsp. cremoris SK11] Length = 513 Score = 37.9 bits (87), Expect = 2.7, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 30/89 (33%), Gaps = 12/89 (13%) Query: 23 VLLEKVIALLNPAPGKVILD-----ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77 VL + + LNP ++D T G + K +V +D P ++ +E Sbjct: 317 VLYGEAVKALNPKKDDRVIDAYCGVGTIGF-----AVAKKVKSVHGMDITPESIFDAREN 371 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGVDG 106 + + + +P+ G Sbjct: 372 AKRLG--LKNCHYEIGKAERIIPNWNKSG 398 >gi|307822766|ref|ZP_07652997.1| sun protein [Methylobacter tundripaludum SV96] gi|307736370|gb|EFO07216.1| sun protein [Methylobacter tundripaludum SV96] Length = 435 Score = 37.5 bits (86), Expect = 2.7, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 3/87 (3%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMRDYKEQFSL 87 LL+ PG +LD GG + + ++A+D D + E ++ +L Sbjct: 235 LLDVRPGHRVLDVCAAPGGKTAHILESQQQLKELVAVDIDESRMQRVSENLQRLNLHATL 294 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGVS 114 + + K D ++ D S Sbjct: 295 VVGDAANPASWWDGKPFDRILLDAPCS 321 >gi|18311883|ref|NP_558550.1| cobalt-precorrin-6Y C(15)-methyltransferase [Pyrobaculum aerophilum str. IM2] gi|48428122|sp|Q8ZZA9|CBIT_PYRAE RecName: Full=Probable cobalt-precorrin-6Y C(15)-methyltransferase [decarboxylating] gi|18159297|gb|AAL62732.1| cobalamin biosynthesis precorrin-8W decarboxylase (cbiT) [Pyrobaculum aerophilum str. IM2] Length = 196 Score = 37.5 bits (86), Expect = 2.7, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 32/81 (39%), Gaps = 5/81 (6%) Query: 28 VIALLNPAPGKVILDATFGAG---GYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY--K 82 ++ L G ++D G G + GS V A+D+DP AV ++ + Sbjct: 32 ALSKLRLIKGGTLVDVGCGTGTISVEAALIMGEGSKVYAIDKDPLAVEITKKNAAKFGVG 91 Query: 83 EQFSLFQATFSQLQDYVPDKG 103 ++ + + +L +P Sbjct: 92 DRLIVAEGDALELLPKLPRSN 112 >gi|240140378|ref|YP_002964857.1| dimethyladenosine transferase [Methylobacterium extorquens AM1] gi|240010354|gb|ACS41580.1| dimethyladenosine transferase [Methylobacterium extorquens AM1] Length = 296 Score = 37.5 bits (86), Expect = 2.7, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%) Query: 46 GAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSLF 88 G GG +R+ G+ V+A++RDP A+ E Y + + Sbjct: 61 GPGGLTRALLAAGAKRVVAIERDPRALPALAEIAAHYPGRLDVI 104 >gi|300775571|ref|ZP_07085432.1| tRNA/rRNA cytosine-C5-methylase [Chryseobacterium gleum ATCC 35910] gi|300505598|gb|EFK36735.1| tRNA/rRNA cytosine-C5-methylase [Chryseobacterium gleum ATCC 35910] Length = 401 Score = 37.5 bits (86), Expect = 2.7, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 31 LLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82 L+ G+ ++DA GAGG + + K +IALD + ++ + + Sbjct: 219 FLDVKEGQRVVDACAGAGGKTLHLAALMKNKGQIIALDIFDWKLAELKRRAKRAG 273 >gi|254172772|ref|ZP_04879446.1| SAM-dependent methyltransferase, UbiE/COQ5 family [Thermococcus sp. AM4] gi|214032928|gb|EEB73756.1| SAM-dependent methyltransferase, UbiE/COQ5 family [Thermococcus sp. AM4] Length = 229 Score = 37.5 bits (86), Expect = 2.7, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 36/95 (37%), Gaps = 6/95 (6%) Query: 27 KVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83 + + L +LD G GG+S G V+ +D + +E ++ + Sbjct: 26 ETLEPLLLKFMPKRGRVLDLACGVGGFSFLLEDHGFEVVGVDSSELMLERAREYAKEKRS 85 Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQI 118 + +A +L + D V+F +G S + Sbjct: 86 RVQFVKADAQELP--FENDSFDYVLF-IGDSVVHF 117 >gi|163853045|ref|YP_001641088.1| dimethyladenosine transferase [Methylobacterium extorquens PA1] gi|163664650|gb|ABY32017.1| dimethyladenosine transferase [Methylobacterium extorquens PA1] Length = 296 Score = 37.5 bits (86), Expect = 2.7, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%) Query: 46 GAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSLF 88 G GG +R+ G+ V+A++RDP A+ E Y + + Sbjct: 61 GPGGLTRALLAAGAKRVVAIERDPRALPALAEIAAHYPGRLDVI 104 >gi|218531855|ref|YP_002422671.1| dimethyladenosine transferase [Methylobacterium chloromethanicum CM4] gi|218524158|gb|ACK84743.1| dimethyladenosine transferase [Methylobacterium chloromethanicum CM4] Length = 296 Score = 37.5 bits (86), Expect = 2.8, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%) Query: 46 GAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSLF 88 G GG +R+ G+ V+A++RDP A+ E Y + + Sbjct: 61 GPGGLTRALLAAGAKRVVAIERDPRALPALAEIAAHYPGRLDVI 104 >gi|121612964|ref|YP_001001110.1| site-specific DNA methyltransferase, putative [Campylobacter jejuni subsp. jejuni 81-176] gi|121504211|gb|EAQ72524.2| site-specific DNA methyltransferase, putative [Campylobacter jejuni subsp. jejuni 81-176] Length = 228 Score = 37.5 bits (86), Expect = 2.8, Method: Composition-based stats. Identities = 12/92 (13%), Positives = 30/92 (32%), Gaps = 10/92 (10%) Query: 51 SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFD 110 + + A++ D A E ++ + A ++ + + + ++ Sbjct: 101 AEALSNHALKAYAIELDVKAYKIALENAKNIDPNLEVIHANTFEILPKLIENSKNEIILY 160 Query: 111 LGVSSMQIDCGDRGFS------FQKSGPLDMR 136 L D + GFS + LD++ Sbjct: 161 LD---PPFDTRE-GFSDIYEKIYHFLENLDLK 188 >gi|254562982|ref|YP_003070077.1| dimethyladenosine transferase [Methylobacterium extorquens DM4] gi|254270260|emb|CAX26254.1| dimethyladenosine transferase [Methylobacterium extorquens DM4] Length = 296 Score = 37.5 bits (86), Expect = 2.8, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%) Query: 46 GAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSLF 88 G GG +R+ G+ V+A++RDP A+ E Y + + Sbjct: 61 GPGGLTRALLAAGAKRVVAIERDPRALPALAEIAAHYPGRLDVI 104 >gi|298527889|ref|ZP_07015293.1| Methyltransferase type 11 [Desulfonatronospira thiodismutans ASO3-1] gi|298511541|gb|EFI35443.1| Methyltransferase type 11 [Desulfonatronospira thiodismutans ASO3-1] Length = 268 Score = 37.5 bits (86), Expect = 2.8, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 5/96 (5%) Query: 30 ALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQ 89 + + I+D G G +S F + G V+++D + E RD S Sbjct: 53 DIFRQRNVQSIMDVAAGTGFHSVRFLEQGYRVVSVDGSANMLVQAFENARDKGYILSTVH 112 Query: 90 ATFSQLQ-DYVPDKGVDGVVFDLGVS-SMQIDCGDR 123 + +L D + + LG S + D DR Sbjct: 113 TDWRRLSFDVQGEYDA---LICLGNSFTHLFDEHDR 145 >gi|193662159|ref|XP_001950779.1| PREDICTED: trimethylguanosine synthase-like [Acyrthosiphon pisum] Length = 248 Score = 37.5 bits (86), Expect = 2.8, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 2/68 (2%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96 +I+D GAG S F VIA+D DP + + + Y ++ + L Sbjct: 89 LIIDGFCGAGSNSIQFALTSKKVIAIDIDPIKIELARNNAKVYGVSDRIEFIIGDYYALA 148 Query: 97 DYVPDKGV 104 + V Sbjct: 149 PTLKADVV 156 >gi|153009574|ref|YP_001370789.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Ochrobactrum anthropi ATCC 49188] gi|151561462|gb|ABS14960.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Ochrobactrum anthropi ATCC 49188] Length = 222 Score = 37.5 bits (86), Expect = 2.8, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 39/105 (37%), Gaps = 15/105 (14%) Query: 29 IALLNPAPGKVILDATFGAG-GYSRSFC-KMGSNVIALDRDPFAVSCGQETMRDYK-EQF 85 + L V+LD G G GYS + K+ +VI L+ D + + ++ + Sbjct: 76 VQLARIKNTDVVLD--VGCGTGYSAAILSKLAGSVIGLESDSVLSAAATARLAEFGYDNV 133 Query: 86 SLFQATF-------SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDR 123 + + V + VD V D +S Q+ G R Sbjct: 134 VIVSGELQAGYPSEAPYDVIVIEGAVDFV-PDALLS--QLKDGGR 175 >gi|307325493|ref|ZP_07604695.1| precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit [Streptomyces violaceusniger Tu 4113] gi|306888962|gb|EFN19946.1| precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit [Streptomyces violaceusniger Tu 4113] Length = 417 Score = 37.5 bits (86), Expect = 2.8, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 34/76 (44%) Query: 29 IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLF 88 +A + P PG ++ D G+G + G+ VI +DRDP A R + Q + Sbjct: 263 LARIGPRPGDLVWDIGAGSGAAAVETAGFGAAVITVDRDPDACERTDTLARRFGVQLQVV 322 Query: 89 QATFSQLQDYVPDKGV 104 Q ++ + +P+ Sbjct: 323 QGVAPEVLEDLPEPDA 338 >gi|115525299|ref|YP_782210.1| dimethyladenosine transferase [Rhodopseudomonas palustris BisA53] gi|122295624|sp|Q07LF4|RSMA_RHOP5 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|115519246|gb|ABJ07230.1| dimethyladenosine transferase [Rhodopseudomonas palustris BisA53] Length = 287 Score = 37.5 bits (86), Expect = 2.8, Method: Composition-based stats. Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%) Query: 46 GAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSLFQA 90 G GG +R+ +G+ VIA++RD A+ E Y + + A Sbjct: 57 GPGGLTRALLALGAKRVIAIERDERALGALAEISAHYPGRLDIVCA 102 >gi|46125431|ref|XP_387269.1| hypothetical protein FG07093.1 [Gibberella zeae PH-1] Length = 259 Score = 37.5 bits (86), Expect = 2.8, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 71/186 (38%), Gaps = 26/186 (13%) Query: 39 VILDATFGAGGYSRS--FCKMGSNVIALDRDPFAVSCGQETMRDY-----------KEQF 85 +++DA GAGG + + + S VI+++RDP ++C Q + Y + F Sbjct: 85 ILIDAFGGAGGNTIAFTLSERWSRVISIERDPSTLACAQNNAKVYGIEPGLITWILGDSF 144 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFD--LGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGIS 143 F++ ++ PD V+ D + SS ++ ++ + + Sbjct: 145 EYLDKLFNRPEELHPDLRVN---LDETVLFSSPPWGGPG----YRTDEVFNL-YNMQPYN 196 Query: 144 ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSK 203 D+ N N D L + +Q IA R+ Q + +S SK Sbjct: 197 LDDLHNAYNRLDHALFLPRTSDIRQ---IAKLAPSDRKVEVVQYCMEGASKALVAFLPSK 253 Query: 204 NNRIHP 209 +++ H Sbjct: 254 SSKKHE 259 >gi|332031558|gb|EGI71030.1| Trimethylguanosine synthase [Acromyrmex echinatior] Length = 1035 Score = 37.5 bits (86), Expect = 2.8, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 2/63 (3%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96 I+DA GAG + F VIA+D DP + + Y ++ F QL Sbjct: 879 TIIDAFCGAGSNAIQFAFTCERVIAIDIDPDKIKIARHNAGIYGVDDRIEFITGDFLQLA 938 Query: 97 DYV 99 + Sbjct: 939 PQL 941 >gi|324998850|ref|ZP_08119962.1| methylase involved in ubiquinone/menaquinone biosynthesis [Pseudonocardia sp. P1] Length = 208 Score = 37.5 bits (86), Expect = 2.8, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 4/66 (6%) Query: 46 GAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYV--PD 101 GAG + + + V A+D DP V+ + + Y + L + L+ + D Sbjct: 45 GAGYGTELILRRFATARVDAIDLDPAMVTRAKRRLSGYGGRVRLATGDMTDLRAALDAED 104 Query: 102 KGVDGV 107 D V Sbjct: 105 GSYDAV 110 >gi|290961780|ref|YP_003492962.1| SAM-dependent methyltransferase [Streptomyces scabiei 87.22] gi|260651306|emb|CBG74428.1| putative SAM-dependent methyltransferase [Streptomyces scabiei 87.22] Length = 403 Score = 37.5 bits (86), Expect = 2.8, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 34/76 (44%) Query: 29 IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLF 88 +A L P G ++ D G+G ++ + G+ VIA+D DP A R + Q + Sbjct: 247 LACLGPRVGDLVWDIGSGSGAFATEAARCGAAVIAVDHDPEACGRTTLAARRFGVQLQVV 306 Query: 89 QATFSQLQDYVPDKGV 104 + + +P+ V Sbjct: 307 HGAAPHVLENLPEPDV 322 >gi|257094638|ref|YP_003168279.1| TrmA family RNA methyltransferase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047162|gb|ACV36350.1| RNA methyltransferase, TrmA family [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 437 Score = 37.5 bits (86), Expect = 2.8, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 46/112 (41%), Gaps = 11/112 (9%) Query: 23 VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82 VL+ + ++LL+P PG+ I D G G ++ + G++V+ ++ V E Sbjct: 271 VLVRRALSLLDPRPGERIADMFCGLGNFTLPIARAGASVVGIEGSAELVGRAAENATANG 330 Query: 83 --EQFSLFQAT-FSQLQDYVPDKG-VDGVVFDL-------GVSSMQIDCGDR 123 ++ A F+ + + G D ++ D V S+ D R Sbjct: 331 LHDRVEYRVANLFTATTESIGALGRFDKMLIDPPREGALELVKSLGADGPGR 382 >gi|239930453|ref|ZP_04687406.1| hypothetical protein SghaA1_19676 [Streptomyces ghanaensis ATCC 14672] Length = 257 Score = 37.5 bits (86), Expect = 2.8, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 35/99 (35%), Gaps = 8/99 (8%) Query: 26 EKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK 82 +++ LL+ G +LDA G G + + G VI +DRDP + + + Sbjct: 30 RQMLDLLDIRAGHTVLDAGCGPGTDLPALAERVGDGGTVIGVDRDPAMLERARARTEGLR 89 Query: 83 EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCG 121 + L + L + L M +D Sbjct: 90 -RVELREGDVHALPVEPGTMDRAKIDRVL----MHVDDP 123 >gi|271962929|ref|YP_003337125.1| phosphomannomutase [Streptosporangium roseum DSM 43021] gi|270506104|gb|ACZ84382.1| Phosphomannomutase [Streptosporangium roseum DSM 43021] Length = 450 Score = 37.5 bits (86), Expect = 2.8, Method: Composition-based stats. Identities = 41/178 (23%), Positives = 58/178 (32%), Gaps = 37/178 (20%) Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYS-----RSFCKMGSNVI-ALDRDPFA 70 +H L ++ L P KV++DA G GG++ S + LD D Sbjct: 155 YAEH----LRSLVDLSGIRPLKVVVDAGNGMGGHTVPVVFEGLPLELSELYFELDGDFPN 210 Query: 71 VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD-GVVFDLGVSSMQIDCGDRGFSFQK 129 + LQ V D G D G+ FD G + +RG S Sbjct: 211 HEANP-----------IEPDNLRDLQKAVLDVGADIGLAFD-GDADRCWVIDERGES--- 255 Query: 130 SGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187 +S S I+A V + I+ L SR IV P +T Sbjct: 256 -------VSPSAITALVAVRELARHPGAMIIHNLIT----SRSVPEIVAEHGGEPVRT 302 >gi|284799691|ref|ZP_05984596.2| 23S rRNA (uracil-5-)-methyltransferase RumA [Neisseria subflava NJ9703] gi|284797230|gb|EFC52577.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Neisseria subflava NJ9703] Length = 465 Score = 37.5 bits (86), Expect = 2.8, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 4/92 (4%) Query: 23 VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQE--TMRD 80 V++ + + LLNP G+ I D G G +S K G++V+ ++ + V +E + Sbjct: 305 VMVARAVRLLNPQKGERIADLFCGLGNFSLPLAKSGASVVGIEGAYYLVDRARENARLNR 364 Query: 81 YKEQFSL-FQATFSQLQDYVPDKG-VDGVVFD 110 E + F + V G D ++ D Sbjct: 365 CAENMTFSVADLFDTDEKTVESWGKFDKMLLD 396 >gi|296418726|ref|XP_002838976.1| hypothetical protein [Tuber melanosporum Mel28] gi|295634970|emb|CAZ83167.1| unnamed protein product [Tuber melanosporum] Length = 248 Score = 37.5 bits (86), Expect = 2.9, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 36/102 (35%), Gaps = 12/102 (11%) Query: 36 PGKVILDATFGAGGYSR--SFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQA- 90 P + ILD G GG + + VIA+D+D A+ C + R Y ++ Sbjct: 85 PVETILDVFCGIGGNAIQFALSTSCKRVIAVDKDQTAIDCARHNARIYGVLDKIEFVVGD 144 Query: 91 TFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGD-RGFS-FQKS 130 F ++ P D V S RGF F Sbjct: 145 VFQLIEKQDPRLAADAVFM-----SPPWGGPSYRGFGVFNLD 181 >gi|256394198|ref|YP_003115762.1| methyltransferase type 11 [Catenulispora acidiphila DSM 44928] gi|256360424|gb|ACU73921.1| Methyltransferase type 11 [Catenulispora acidiphila DSM 44928] Length = 252 Score = 37.5 bits (86), Expect = 2.9, Method: Composition-based stats. Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%) Query: 27 KVIALLNPAPGKVILDATFGAGGYSRSF-CKMGSNVIALD 65 +VI L PG ++D G GGY + G+ +I +D Sbjct: 51 EVIEALRLEPGTRLVDLACGRGGYGLEMAARTGATLIGID 90 >gi|229820435|ref|YP_002881961.1| (Uracil-5)-methyltransferase [Beutenbergia cavernae DSM 12333] gi|229566348|gb|ACQ80199.1| (Uracil-5)-methyltransferase [Beutenbergia cavernae DSM 12333] Length = 405 Score = 37.5 bits (86), Expect = 2.9, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 4/92 (4%) Query: 22 PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETM 78 VL+E V+ P G+ +LD GAG ++ V A++ DP AV + + Sbjct: 243 TVLVEAVLDAAQPQAGERVLDLYSGAGLFTLPLADAVGADGQVAAVEGDPAAVRDARRNL 302 Query: 79 RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFD 110 D + Q L + + + D G D V+ D Sbjct: 303 HD-RGQVDLHGGSVADVLDAGVGAGADLVILD 333 >gi|257885254|ref|ZP_05664907.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium 1,231,501] gi|257821106|gb|EEV48240.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium 1,231,501] Length = 460 Score = 37.5 bits (86), Expect = 2.9, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 35/99 (35%), Gaps = 21/99 (21%) Query: 24 LLEKVIALLNPAPGKVILD-----ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETM 78 L + I L+ P + I+D T G S K V +D P A++ ++ + Sbjct: 300 LYGEGIKALDVQPNETIVDAYCGVGTIG-----LSVAKQAKEVRGMDTVPQAIADAKKNV 354 Query: 79 RDYKEQFSLFQATF--SQLQDYVPDK-----GVDGVVFD 110 E+ + + +P DG++ D Sbjct: 355 ----ERLGYHNTRYEVGTAEQVLPKWLNEGFQPDGIIVD 389 >gi|301058669|ref|ZP_07199670.1| methionine biosynthesis protein MetW [delta proteobacterium NaphS2] gi|300447233|gb|EFK10997.1| methionine biosynthesis protein MetW [delta proteobacterium NaphS2] Length = 264 Score = 37.5 bits (86), Expect = 2.9, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 1/59 (1%) Query: 29 IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSL 87 ++LL+P PG+ +LD G G + F KMG +V +D P ++ + + +K F + Sbjct: 34 VSLLDPRPGERVLDIGCGTGTHLIMFSKMGLDVSGVDASPEVLAKARARL-GHKSNFKI 91 >gi|291438811|ref|ZP_06578201.1| UbiE/COQ5 methyltransferase [Streptomyces ghanaensis ATCC 14672] gi|291341706|gb|EFE68662.1| UbiE/COQ5 methyltransferase [Streptomyces ghanaensis ATCC 14672] Length = 260 Score = 37.5 bits (86), Expect = 3.0, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 35/99 (35%), Gaps = 8/99 (8%) Query: 26 EKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK 82 +++ LL+ G +LDA G G + + G VI +DRDP + + + Sbjct: 33 RQMLDLLDIRAGHTVLDAGCGPGTDLPALAERVGDGGTVIGVDRDPAMLERARARTEGLR 92 Query: 83 EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCG 121 + L + L + L M +D Sbjct: 93 -RVELREGDVHALPVEPGTMDRAKIDRVL----MHVDDP 126 >gi|268326443|emb|CBH40031.1| hypothetical protein, SAM-dependent methyltransferase type 11 family [uncultured archaeon] Length = 311 Score = 37.5 bits (86), Expect = 3.0, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 9/88 (10%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRD 80 L +++ LN +ILD FG G S + S +I LD + + +E + D Sbjct: 30 LRNTLLSHLNVDKDGIILD--FGTGPGSLALVLAKSGYKKIIGLDINEGMLGVAREKLSD 87 Query: 81 YKEQFSLFQATFSQLQDYVPDKGVDGVV 108 Y L + L + D VD VV Sbjct: 88 YP--VKLVRGDGLHLP--IDDNSVDAVV 111 >gi|242399817|ref|YP_002995242.1| Sun/NOL1/NOP nucleolar protein [Thermococcus sibiricus MM 739] gi|242266211|gb|ACS90893.1| Sun/NOL1/NOP nucleolar protein [Thermococcus sibiricus MM 739] Length = 383 Score = 37.5 bits (86), Expect = 3.0, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 11/91 (12%) Query: 32 LNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQFSL 87 L+P G +I+D T GG + + ++ALD+ +S + + + L Sbjct: 193 LDPKEGDLIIDMTAAPGGKTSHIAQLLENRGEILALDKSKNRLSKMKNELERLGVKNVKL 252 Query: 88 FQATFSQLQDYVPDKGVDGVVFD-----LGV 113 Q L + D ++ D LGV Sbjct: 253 IQMDSRNLPEL--GIQADKILLDAPCTALGV 281 >gi|149372985|ref|ZP_01891941.1| putative sun protein [unidentified eubacterium SCB49] gi|149354345|gb|EDM42912.1| putative sun protein [unidentified eubacterium SCB49] Length = 403 Score = 37.5 bits (86), Expect = 3.0, Method: Composition-based stats. Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 3/38 (7%) Query: 31 LLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALD 65 +L+P PG+ I+DA GAGG + + +I++D Sbjct: 218 MLDPKPGQRIVDACAGAGGKSLHISEMMENKGQLISMD 255 >gi|320104090|ref|YP_004179681.1| type 11 methyltransferase [Isosphaera pallida ATCC 43644] gi|319751372|gb|ADV63132.1| Methyltransferase type 11 [Isosphaera pallida ATCC 43644] Length = 380 Score = 37.5 bits (86), Expect = 3.0, Method: Composition-based stats. Identities = 27/95 (28%), Positives = 39/95 (41%), Gaps = 10/95 (10%) Query: 50 YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVF 109 Y+R + G+ VI LD AV RD++++ + QA L V + D +VF Sbjct: 143 YTRLLAERGARVIGLDL-STAVDKAAALTRDHRQRVLIAQA--DLLHPPVAREAFD-LVF 198 Query: 110 DLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISA 144 LGV GF L R+ G+ A Sbjct: 199 SLGVL-HHTPDPRAGF-----AQLAARVKPGGLLA 227 >gi|296270988|ref|YP_003653620.1| type 12 methyltransferase [Thermobispora bispora DSM 43833] gi|296093775|gb|ADG89727.1| Methyltransferase type 12 [Thermobispora bispora DSM 43833] Length = 258 Score = 37.5 bits (86), Expect = 3.0, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 22/49 (44%) Query: 29 IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77 + LL+P PG+ +LD G G + G++V+ +D + Sbjct: 31 LDLLDPKPGERVLDLGCGTGVLTAEIAARGAHVLGIDASRAMIEAAMAK 79 >gi|331664345|ref|ZP_08365251.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli TA143] gi|284922722|emb|CBG35810.1| 23s rRNA (uracil-5-)-methyltransferase [Escherichia coli 042] gi|331058276|gb|EGI30257.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli TA143] Length = 433 Score = 37.5 bits (86), Expect = 3.0, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 36/90 (40%), Gaps = 3/90 (3%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR-DYK 82 ++ + + L+ P +LD G G ++ ++V+ ++ P V GQ+ R + Sbjct: 274 MVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNDL 333 Query: 83 EQFSLFQATFSQ--LQDYVPDKGVDGVVFD 110 + + + + G D V+ D Sbjct: 334 HNVTFYHENLEEDVTKQPWAKNGFDKVLLD 363 >gi|330508716|ref|YP_004385144.1| methyltransferase [Methanosaeta concilii GP-6] gi|328929524|gb|AEB69326.1| methyltransferase, putative [Methanosaeta concilii GP-6] Length = 263 Score = 37.5 bits (86), Expect = 3.1, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 24/67 (35%) Query: 30 ALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQ 89 L G ILD G G +S + G V LD ++ + R K + Sbjct: 36 EELAVRDGGSILDVGCGTGRHSIELARRGYAVTGLDLSAEMLARAADAARSKKVNVQWIR 95 Query: 90 ATFSQLQ 96 + ++ Q Sbjct: 96 SDAARFQ 102 >gi|153835467|ref|ZP_01988134.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio harveyi HY01] gi|148867978|gb|EDL67175.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio harveyi HY01] Length = 439 Score = 37.5 bits (86), Expect = 3.1, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 3/90 (3%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR-DYK 82 ++ + + L+P + +LD G G +S K +V+ ++ V + Sbjct: 281 MVAQAVDWLDPKSDERVLDLFCGLGNFSLPIAKRAKHVVGVEGVAEMVEKAANNASLNQI 340 Query: 83 EQFSLFQATFSQLQD--YVPDKGVDGVVFD 110 + A Q + + D V+ D Sbjct: 341 NSARFYHANLEQDFEGQVWAAEQFDKVLLD 370 >gi|84488917|ref|YP_447149.1| CbiT [Methanosphaera stadtmanae DSM 3091] gi|84372236|gb|ABC56506.1| CbiT [Methanosphaera stadtmanae DSM 3091] Length = 191 Score = 37.5 bits (86), Expect = 3.1, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 33/77 (42%), Gaps = 2/77 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQF 85 VI+ + V++D G GG + F K + ++D +P A+ + + + + Sbjct: 29 VISKVKLTDEDVVVDVGCGTGGLTLEFAKRAKKIYSIDMNPDAIKTTRANLEKFGLQNKV 88 Query: 86 SLFQATFSQLQDYVPDK 102 L + + D++ D Sbjct: 89 ELIEDEGLKALDHIEDF 105 >gi|126725880|ref|ZP_01741722.1| Protein-L-isoaspartate carboxylmethyltransferase [Rhodobacterales bacterium HTCC2150] gi|126705084|gb|EBA04175.1| Protein-L-isoaspartate carboxylmethyltransferase [Rhodobacterales bacterium HTCC2150] Length = 268 Score = 37.5 bits (86), Expect = 3.1, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 45/116 (38%), Gaps = 20/116 (17%) Query: 23 VLLEK-----VIALLNPAPGKVILDATFGAG-GYSRSFCKMGSNVIALDRDPFAVSCGQE 76 VLL+ ++ L+ P V+LD G G GYS + S+ + D ++ + Sbjct: 111 VLLDPRTMGKMLDALDVQPDDVVLD--IGCGLGYSSALLARMSDAVVAVEDNAELAAEAQ 168 Query: 77 TM--RDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVS-SMQIDCGDR 123 + + ++F+ L + G V G V D S + Q+ G R Sbjct: 169 RLLSEVGADNAAVFEG---DLAEGAAKHGPYDAIVVQGAVEDFPSSLAAQLKEGGR 221 >gi|146295186|ref|YP_001178957.1| short-chain dehydrogenase/reductase SDR [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145408762|gb|ABP65766.1| short-chain dehydrogenase/reductase SDR [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 261 Score = 37.5 bits (86), Expect = 3.1, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 1/49 (2%) Query: 51 SRSFCKMGSNVIALDRDPFAVSCGQE-TMRDYKEQFSLFQATFSQLQDY 98 + SF K G+ V A+D D A+ E + Y+ + F+ + ++D Sbjct: 28 ALSFLKNGAAVAAIDVDREAIEDAMEDFFKGYEGKIQFFECNLADMEDI 76 >gi|271965787|ref|YP_003339983.1| protein-L-isoaspartatecarboxylmethyltransferase-like protein [Streptosporangium roseum DSM 43021] gi|270508962|gb|ACZ87240.1| Protein-L-isoaspartatecarboxylmethyltransferase- like protein [Streptosporangium roseum DSM 43021] Length = 410 Score = 37.5 bits (86), Expect = 3.2, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 39/96 (40%), Gaps = 8/96 (8%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMR 79 L +++ PG +L+ G+GGY+ + +V +D DPF + + Sbjct: 80 LQAEMLETAQLTPGAKVLE--VGSGGYNAALIAEIVGPSGSVTTIDIDPFVTERAERFLA 137 Query: 80 DYK-EQFSLFQATFSQ-LQDYVPDKGVDGVVFDLGV 113 + + ++VP+ G D ++ +GV Sbjct: 138 ETGYSHVRVVLGDAEHAAAEHVPEGGFDAIIVTVGV 173 >gi|309798887|ref|ZP_07693147.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus infantis SK1302] gi|308117483|gb|EFO54899.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus infantis SK1302] Length = 362 Score = 37.5 bits (86), Expect = 3.2, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 24/65 (36%), Gaps = 10/65 (15%) Query: 23 VLLEKVIALLNPAPGKVILD-----ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77 VL + + L+ ++D T G +F K ++ +D P A+ +E Sbjct: 276 VLYSEAVKALDVNENDHLIDAYCGVGTIGF-----AFAKKVKSLRGMDIIPEAIEDAKEN 330 Query: 78 MRDYK 82 + Sbjct: 331 AKRMG 335 >gi|291562084|emb|CBL40900.1| Methylase involved in ubiquinone/menaquinone biosynthesis [butyrate-producing bacterium SS3/4] Length = 247 Score = 37.5 bits (86), Expect = 3.2, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 35/100 (35%), Gaps = 4/100 (4%) Query: 26 EKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQF 85 ++V+ LN P K +LD G G ++ + I D + E + Y Sbjct: 58 KQVVQHLNLGPDKKVLDIGCGIGRWAENIIDHCGEYIGTDFSDEMIKSAGERFKSYSNAL 117 Query: 86 SLFQATFSQLQDYVPDKG--VDGVVFDLGVSSMQIDCGDR 123 ++F + G D V+ GVS D R Sbjct: 118 -FINSSFQDIFKNKKIIGKKFDTVIIA-GVSMYINDAELR 155 >gi|153003173|ref|YP_001377498.1| Fmu (Sun) domain-containing protein [Anaeromyxobacter sp. Fw109-5] gi|152026746|gb|ABS24514.1| Fmu (Sun) domain protein [Anaeromyxobacter sp. Fw109-5] Length = 437 Score = 37.5 bits (86), Expect = 3.2, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 3/51 (5%) Query: 35 APGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPFAVSCGQETMRDYK 82 PGK ++DA GAGG S + + ++ ALD D + ++ R Sbjct: 237 RPGKTVVDACAGAGGKSLALAMEMRNKGSLHALDTDEGRLDDAKKRARRAG 287 >gi|240275787|gb|EER39300.1| trimethylguanosine synthase [Ajellomyces capsulatus H143] gi|325093154|gb|EGC46464.1| trimethylguanosine synthase [Ajellomyces capsulatus H88] Length = 240 Score = 37.5 bits (86), Expect = 3.2, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 4/62 (6%) Query: 33 NPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQETMRDYK--EQFSLF 88 P V++DA GAGG + +F + + A+++DP + C + + Y ++ + F Sbjct: 70 APKDRSVLVDAFAGAGGNTIAFAQSDRWKRIYAIEKDPTVLQCAKHNAKLYGVEDKITWF 129 Query: 89 QA 90 + Sbjct: 130 EG 131 >gi|239993908|ref|ZP_04714432.1| 16S rRNA m(5)C 967 methyltransferase [Alteromonas macleodii ATCC 27126] Length = 439 Score = 37.5 bits (86), Expect = 3.2, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 3/88 (3%) Query: 30 ALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETMRDYKEQFS 86 L P + ILD GG + + + V+ALD D + +E M K Sbjct: 244 HYLKPQANERILDCCAAPGGKTGHIVECAPDTQYVLALDADATRLKRVEENMTRLKHTVD 303 Query: 87 LFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + Q + + K D ++ D S Sbjct: 304 IKQGDAANPDTWWDGKPFDRILLDAPCS 331 >gi|225563205|gb|EEH11484.1| trimethylguanosine synthase [Ajellomyces capsulatus G186AR] Length = 240 Score = 37.5 bits (86), Expect = 3.2, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 4/62 (6%) Query: 33 NPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQETMRDYK--EQFSLF 88 P V++DA GAGG + +F + + A+++DP + C + + Y ++ + F Sbjct: 70 APKDRSVLVDAFAGAGGNTIAFAQSDRWKRIYAIEKDPTVLQCAKHNAKLYGVEDKITWF 129 Query: 89 QA 90 + Sbjct: 130 EG 131 >gi|328675743|gb|AEB28418.1| RNA methyltransferase, trmA family [Francisella cf. novicida 3523] Length = 449 Score = 37.5 bits (86), Expect = 3.2, Method: Composition-based stats. Identities = 26/162 (16%), Positives = 57/162 (35%), Gaps = 24/162 (14%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83 ++++ I LL+ + I+D G G ++ + VI ++ +P V +ET + Sbjct: 289 MIKRAIKLLDISENDSIIDLFCGLGNFTLPISQHAKTVIGVEGEPTMVKRAKETADN--N 346 Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGIS 143 + + L + S + F + K M + Sbjct: 347 NITNVNFYAANLFE-----------------SFEDKEWFNNFEYNK-----MLLDPPRAG 384 Query: 144 ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185 A +V + ++ RI+ + + +R A +VK + Sbjct: 385 AQEVCSNIEKFNVKRIVYVSCDTATLARDAGILVKSKGYKLI 426 >gi|169840261|ref|ZP_02873449.1| hypothetical protein cdivTM_24525 [candidate division TM7 single-cell isolate TM7a] Length = 28 Score = 37.5 bits (86), Expect = 3.3, Method: Composition-based stats. Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 3/29 (10%) Query: 289 TKKVV-VPTQEDVAFNRRSRSAKLRAGMR 316 KK + T + A+N RSRSAKLR ++ Sbjct: 1 NKKPLDGATYD--AYNPRSRSAKLRGALK 27 >gi|188583141|ref|YP_001926586.1| dimethyladenosine transferase [Methylobacterium populi BJ001] gi|179346639|gb|ACB82051.1| dimethyladenosine transferase [Methylobacterium populi BJ001] Length = 291 Score = 37.5 bits (86), Expect = 3.3, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%) Query: 46 GAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSLF 88 G GG +R+ G+ V+A++RDP A+ E Y + + Sbjct: 61 GPGGLTRALLAAGAKRVVAIERDPRALPALAEIAAHYPGRLDVI 104 >gi|300766053|ref|ZP_07076022.1| SAM-dependent methyltransferase [Listeria monocytogenes FSL N1-017] gi|300513255|gb|EFK40333.1| SAM-dependent methyltransferase [Listeria monocytogenes FSL N1-017] Length = 192 Score = 37.5 bits (86), Expect = 3.3, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 33/86 (38%), Gaps = 8/86 (9%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK--EQFSL 87 PG +DAT G G+ +V+ D AV + + + Q L Sbjct: 18 VRPGDYAIDATCGN-GHDTLLLAELVGINGHVLGFDIQQMAVDATKARLENAGVSSQMEL 76 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGV 113 A+ +++ Y + V +F+LG Sbjct: 77 VCASHARIPAY-TSRPVRAAIFNLGY 101 >gi|67920677|ref|ZP_00514197.1| Ribosomal protein L11 methyltransferase [Crocosphaera watsonii WH 8501] gi|67858161|gb|EAM53400.1| Ribosomal protein L11 methyltransferase [Crocosphaera watsonii WH 8501] Length = 299 Score = 37.5 bits (86), Expect = 3.3, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 14/102 (13%) Query: 17 IGDH-VPVLLEKVIALLNPAPGKVILDATFGAG------GYSRSFCKMGSNVIALDRDPF 69 G H L + + + P + ++ A G+G G + S A+D DP Sbjct: 133 TGTHPTTQLCLESLEMRLSKPDRDVVIADIGSGSGILSIG---AILLGASKAYAVDIDPL 189 Query: 70 AVSCGQETM---RDYKEQFSLFQATFSQLQDYVPDKGVDGVV 108 AV +E + ++ Q + ++L + V D GVDG+V Sbjct: 190 AVKAARENRHLNQIDPNNLAINQGSLTELLELVSD-GVDGIV 230 >gi|262273333|ref|ZP_06051148.1| hypothetical protein VHA_000310 [Grimontia hollisae CIP 101886] gi|262222706|gb|EEY74016.1| hypothetical protein VHA_000310 [Grimontia hollisae CIP 101886] Length = 250 Score = 37.5 bits (86), Expect = 3.3, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 5/74 (6%) Query: 9 MSSAIHHTI--GDH---VPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIA 63 MS+ I +H V L +KV+ L P PG+ ILD G G ++ +G +V+ Sbjct: 1 MSTDIWQATNYANHASYVSQLSQKVMQDLAPQPGERILDLGCGDGELAKVMLDLGCDVVG 60 Query: 64 LDRDPFAVSCGQET 77 +D V Q+ Sbjct: 61 IDSSQNMVEAAQQR 74 >gi|86360739|ref|YP_472626.1| ribitol 2-dehydrogenase protein [Rhizobium etli CFN 42] gi|86284841|gb|ABC93899.1| ribitol 2-dehydrogenase protein [Rhizobium etli CFN 42] Length = 241 Score = 37.5 bits (86), Expect = 3.3, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 25/69 (36%), Gaps = 9/69 (13%) Query: 51 SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFD 110 + + G V+ +DRD A+ + + L+ +DG++ Sbjct: 23 TEAIIAAGGTVVMIDRDEAALDAACGRLGE-----RAIALPLDLLKPEDCAGLLDGILAK 77 Query: 111 LGVSSMQID 119 +G Q+D Sbjct: 78 VG----QLD 82 >gi|78355142|ref|YP_386591.1| methyltransferase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78217547|gb|ABB36896.1| methyltransferase (putative) [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 195 Score = 37.5 bits (86), Expect = 3.4, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 35/98 (35%), Gaps = 14/98 (14%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMR 79 L+ +V+ ++DAT G G+ F V D A+ ++ Sbjct: 19 LVRQVV-----RSADTVVDATAGN-GHDTLFLAGLVGPQGRVYGFDVQAQALENTARRLQ 72 Query: 80 DYKE--QFSLFQATFSQLQDYVPD--KGVDGVVFDLGV 113 + Q +LF A +P + + +F+LG Sbjct: 73 RHGAERQVTLFHAGHEAAGRLLPAGTENLACAMFNLGY 110 >gi|20094473|ref|NP_614320.1| precorrin-6B methylase [Methanopyrus kandleri AV19] gi|19887569|gb|AAM02250.1| Precorrin-6B methylase [Methanopyrus kandleri AV19] Length = 188 Score = 37.5 bits (86), Expect = 3.4, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 41/91 (45%), Gaps = 5/91 (5%) Query: 22 PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETM 78 PV+ V+A+L P PG+ IL+ G+G + + V A++ D A + + Sbjct: 21 PVMKATVLAVLRPRPGERILEIGAGSGSLTLELARAVGPLGRVYAVEGDKEAFRSLERNV 80 Query: 79 RDY--KEQFSLFQATFSQLQDYVPDKGVDGV 107 RD+ +++ + + + + V + V Sbjct: 81 RDFCLEDRIEIVRGWAPEALEDVDEVDAAVV 111 >gi|20807438|ref|NP_622609.1| ribosomal protein L11 methyltransferase [Thermoanaerobacter tengcongensis MB4] gi|38605369|sp|Q8RB66|PRMA_THETN RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11 Mtase gi|20515962|gb|AAM24213.1| Ribosomal protein L11 methylase [Thermoanaerobacter tengcongensis MB4] Length = 309 Score = 37.5 bits (86), Expect = 3.4, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 58/149 (38%), Gaps = 12/149 (8%) Query: 28 VIALLN--PAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYK-E 83 + L PG ++ D G+G S + K+G++ V D D AV +E ++ E Sbjct: 163 CLQFLEDIVKPGAIVFDVGCGSGILSIAASKLGASYVYGADVDEMAVKIARENVKLNGLE 222 Query: 84 QFSLFQA----TFSQLQDY-VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138 +FQ+ F D V + D ++ + + G F SG + R Sbjct: 223 NVEIFQSDLLKNFRGKADVIVANIIADAIIRLIPDVLPHLKEE--GL-FLASGIIKDRFE 279 Query: 139 CSGISASDVVNQANVKDLTRILGILGEEK 167 A + ++K+ L IL ++K Sbjct: 280 EVKERAEEFFEIIDMKEEKEWLSILMKKK 308 >gi|253701400|ref|YP_003022589.1| methyltransferase type 11 [Geobacter sp. M21] gi|251776250|gb|ACT18831.1| Methyltransferase type 11 [Geobacter sp. M21] Length = 286 Score = 37.5 bits (86), Expect = 3.4, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 5/69 (7%) Query: 32 LNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQ---ETMRDYKEQFSL 87 L+PAPG ++LD G GG SR ++ +VI +D+ P + + E + ++ + Sbjct: 66 LDPAPGLLVLDVGCGLGGASRYLARLLDCHVIGVDQSPEYCNVARMLSERL-GLSDRVAY 124 Query: 88 FQATFSQLQ 96 QA QL Sbjct: 125 LQADALQLP 133 >gi|91201823|emb|CAJ74883.1| strongly similar to glycine-sarcosine-dimethylglycine methyltransferase [Candidatus Kuenenia stuttgartiensis] Length = 280 Score = 37.5 bits (86), Expect = 3.4, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 3/96 (3%) Query: 29 IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLF 88 I L + ILD G G +S K G V++ D P ++ T R++ Sbjct: 59 IEELRRRGARKILDVATGTGFHSIRLLKAGFEVVSADGSPEMLAKAFATGREHGFILRTV 118 Query: 89 QATFSQLQDYVPDKGVDGVVFDLGVS-SMQIDCGDR 123 QA + L V D V+ LG S + + DR Sbjct: 119 QADWRWLNRDVH-GKFDAVIC-LGNSFTHLFNEHDR 152 >gi|293602344|ref|ZP_06684790.1| RNA methyltransferase Sun [Achromobacter piechaudii ATCC 43553] gi|292819106|gb|EFF78141.1| RNA methyltransferase Sun [Achromobacter piechaudii ATCC 43553] Length = 445 Score = 37.5 bits (86), Expect = 3.4, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 4/86 (4%) Query: 30 ALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYK---EQF 85 LL PA G +LDA GG + ++ +++ALD D + ++ + ++ Sbjct: 253 ELLAPADGMRVLDACSAPGGKTAHLLELADIDLVALDADGERLERVEQNLDRLGLASDRV 312 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDL 111 L A + L + K D V+ D+ Sbjct: 313 HLEAADAADLDAWWDGKPFDAVLADV 338 >gi|299820611|ref|ZP_07052501.1| 23S rRNA (uracil-5-)-methyltransferase [Listeria grayi DSM 20601] gi|299818106|gb|EFI85340.1| 23S rRNA (uracil-5-)-methyltransferase [Listeria grayi DSM 20601] Length = 460 Score = 37.5 bits (86), Expect = 3.4, Method: Composition-based stats. Identities = 15/92 (16%), Positives = 38/92 (41%), Gaps = 4/92 (4%) Query: 23 VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR-DY 81 VL ++ + ++++DA G G S K +V ++ P A+ + + + Sbjct: 300 VLYQEALDAAGLTGDEIVIDAYCGIGSISLCLAKNAKHVYGVEIVPQAIIDAKANAQLNQ 359 Query: 82 KEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 + + + ++ +P+ G+ D+ V Sbjct: 360 LDNVTFETG---KAEEVIPNWYRSGIKADVLV 388 >gi|294507539|ref|YP_003571597.1| SAM-dependent methyltransferases [Salinibacter ruber M8] gi|294343867|emb|CBH24645.1| SAM-dependent methyltransferases [Salinibacter ruber M8] Length = 192 Score = 37.5 bits (86), Expect = 3.5, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 10/95 (10%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETM--RDY 81 +A G + +DAT G G+ +F G V+ D A+ + + Sbjct: 12 ALAGRAVGEGGIAVDATVGN-GHDTAFLARAVGAGGAVVGFDVQEEALVETRHRLEREAL 70 Query: 82 KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGV 113 L A L ++ + V ++F+LG Sbjct: 71 SAPVRLVHAGHQTLARHLEEAERGRVGAIMFNLGY 105 >gi|260794836|ref|XP_002592413.1| hypothetical protein BRAFLDRAFT_67279 [Branchiostoma floridae] gi|229277632|gb|EEN48424.1| hypothetical protein BRAFLDRAFT_67279 [Branchiostoma floridae] Length = 339 Score = 37.5 bits (86), Expect = 3.5, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 42/121 (34%), Gaps = 13/121 (10%) Query: 168 QASRIAHAIVKR--RQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEI 225 Q + I++ R F+ T + + + T + Q V E+ Sbjct: 182 QKKQTERDIIEAYERTLKEFERT-------ANRLRLRVQEKHNENTEARQRQMESVQREV 234 Query: 226 EELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF 285 +ELA AE+ + GG V+F EDRL + R + HP F Sbjct: 235 DELAAACDQAEQEMAQGG----VTFLEREDRLTEVIEKHRGAPLPPPLRTQVIAFHPKNF 290 Query: 286 Q 286 + Sbjct: 291 E 291 >gi|195036812|ref|XP_001989862.1| GH18564 [Drosophila grimshawi] gi|193894058|gb|EDV92924.1| GH18564 [Drosophila grimshawi] Length = 438 Score = 37.5 bits (86), Expect = 3.5, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 2/60 (3%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96 VI+DA G GG + F K VIA+D D ++ + Y + QA F Q Sbjct: 277 VIVDAFCGCGGNAIQFAKTCGRVIAIDIDAGKLAMAKHNAGIYGVAHKIDFIQADFLQFA 336 >gi|115371881|ref|ZP_01459194.1| hypothetical protein STIAU_8393 [Stigmatella aurantiaca DW4/3-1] gi|115371116|gb|EAU70038.1| hypothetical protein STIAU_8393 [Stigmatella aurantiaca DW4/3-1] Length = 262 Score = 37.5 bits (86), Expect = 3.5, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 5/89 (5%) Query: 30 ALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET--MRDYKEQFSL 87 L G+ +LD G G S G+ V +D P ++ E + +++ + Sbjct: 24 ESLGDLSGQHVLDVGCGDGSNSILLASRGARVTGIDISPRSIELATERAKLAGVQDRV-V 82 Query: 88 FQATFSQLQDYVPDKGVDGVVFDLGVSSM 116 F + +L + P+ D + D G+ Sbjct: 83 FHCSPLELATF-PENTFDVIWGD-GILHH 109 >gi|6478279|gb|AAF13789.1|AF129501_4 unknown [Buchnera aphidicola] Length = 28 Score = 37.5 bits (86), Expect = 3.5, Method: Composition-based stats. Identities = 6/27 (22%), Positives = 13/27 (48%) Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVIL 41 + I H PV+ +++I L + + Sbjct: 2 NDILKHFPVMKKELIQSLKIKKNGIYI 28 >gi|163740720|ref|ZP_02148113.1| Protein-L-isoaspartate carboxylmethyltransferase [Phaeobacter gallaeciensis 2.10] gi|161385711|gb|EDQ10087.1| Protein-L-isoaspartate carboxylmethyltransferase [Phaeobacter gallaeciensis 2.10] Length = 217 Score = 37.1 bits (85), Expect = 3.6, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 43/113 (38%), Gaps = 14/113 (12%) Query: 23 VLLEK-----VIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77 VLLE ++ ++ P +++LD G G + ++ VI ++ D S Q+ Sbjct: 60 VLLEPRTLAKILDAIDVQPDELVLDVACGLGYSTAVIARVAQMVIGVEDDETMASEAQDQ 119 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGV------SSMQIDCGDR 123 + ++ L + G D ++ + GV Q+ G R Sbjct: 120 LSAVGADNAIVHT--GALDAGAAEHGPYDVMIIEGGVETVPEALLDQLKDGGR 170 >gi|220921294|ref|YP_002496595.1| Fmu (Sun) domain-containing protein [Methylobacterium nodulans ORS 2060] gi|219945900|gb|ACL56292.1| Fmu (Sun) domain protein [Methylobacterium nodulans ORS 2060] Length = 427 Score = 37.1 bits (85), Expect = 3.6, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 3/51 (5%) Query: 35 APGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPFAVSCGQETMRDYK 82 PG++++D G GG + + + ++A D DP ++ E +R Sbjct: 229 RPGEMVIDLCAGGGGKTLALAAMMENRGRLVATDGDPRRLAPIHERLRRAG 279 >gi|119946820|ref|YP_944500.1| methyltransferase of 50S ribosomal subunit protein L11 [Psychromonas ingrahamii 37] gi|119865424|gb|ABM04901.1| LSU ribosomal protein L11P methyltransferase [Psychromonas ingrahamii 37] Length = 311 Score = 37.1 bits (85), Expect = 3.6, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 14/88 (15%) Query: 29 IALLNPAPGKVILDATFGAGGYSRSF--CKMGS-NVIALDRDPFAVSCGQETMRDYKEQF 85 + L+ KV++D FG G + K+G+ VI +D DP A++ ++ + + Sbjct: 167 LDSLDLQ-DKVVID--FGCGSGILAIAALKLGAKRVIGIDLDPQAITASRDNAQ--RNNV 221 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGV 113 S QL+ Y+P +G+ D+ V Sbjct: 222 S------DQLELYLPADLPEGIFADVLV 243 >gi|326803898|ref|YP_004321716.1| ribosomal RNA small subunit methyltransferase B [Aerococcus urinae ACS-120-V-Col10a] gi|326650964|gb|AEA01147.1| ribosomal RNA small subunit methyltransferase B [Aerococcus urinae ACS-120-V-Col10a] Length = 470 Score = 37.1 bits (85), Expect = 3.6, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 5/93 (5%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMRD--YK 82 + +LNP G +LDA GG + + V+A D + + ++ Sbjct: 265 AVDILNPKAGDRVLDACAAPGGKTVQLAEYVGKTGQVLAFDIAENKLPLIADNVKRMHVD 324 Query: 83 EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSS 115 Q S+ Q SQL + P + DG++ D S Sbjct: 325 SQVSIQQGDASQLGEKFPAESFDGILVDAPCSG 357 >gi|313892294|ref|ZP_07825887.1| conserved domain protein [Dialister microaerophilus UPII 345-E] gi|313119432|gb|EFR42631.1| conserved domain protein [Dialister microaerophilus UPII 345-E] Length = 260 Score = 37.1 bits (85), Expect = 3.6, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 36/84 (42%), Gaps = 2/84 (2%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83 L EK + N + + ++DA G G S + +VI ++ A+ +E + + Sbjct: 9 LYEKALDFANLSGNETVIDAYCGTGTISLYLAQKAKHVIGIEIIKDAIENAKENAK--RN 66 Query: 84 QFSLFQATFSQLQDYVPDKGVDGV 107 + + + + Y+P+ G+ Sbjct: 67 KIKNVEFHAADVAKYLPELAKKGI 90 >gi|126732775|ref|ZP_01748570.1| protein-L-isoaspartate O-methyltransferase [Sagittula stellata E-37] gi|126706771|gb|EBA05842.1| protein-L-isoaspartate O-methyltransferase [Sagittula stellata E-37] Length = 208 Score = 37.1 bits (85), Expect = 3.6, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 25/127 (19%) Query: 17 IGDHVP-----VLLEK-----VIALLNPAPGKVILDATFGAG-GYSRS-FCKMGSNVIAL 64 + +HVP VLL+ ++ L+ + ++LD G+G GYS + ++ V+A+ Sbjct: 40 VSEHVPLGGGRVLLDPRVFSKMLDALDISNADLVLD--VGSGLGYSAAVIARIAEAVVAV 97 Query: 65 DRDPFAVSCGQETMRD-YKEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSM------ 116 + D S Q + + + + L + L + G D V+ + GV ++ Sbjct: 98 EDDETRASEAQSLLSEHHADNVVLHEGP---LDAGAAEHGPYDVVIVEGGVETLPDTLCD 154 Query: 117 QIDCGDR 123 Q+ G R Sbjct: 155 QLKEGGR 161 >gi|126180109|ref|YP_001048074.1| methyltransferase type 11 [Methanoculleus marisnigri JR1] gi|125862903|gb|ABN58092.1| Methyltransferase type 11 [Methanoculleus marisnigri JR1] Length = 210 Score = 37.1 bits (85), Expect = 3.6, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 6/70 (8%) Query: 22 PVLLEKVIALLNPAPGKVILDATFGAG-GY-SRSFCKMGS-NVIALDRDPFAVSCGQETM 78 PV+ E+ +A + LD G+G G+ S + + + ++IALD DP + T Sbjct: 21 PVIAEQALAWSGIR-DGIALD--LGSGPGHLSVALAEKSNLSIIALDADPATSRIARTTA 77 Query: 79 RDYKEQFSLF 88 ++ Sbjct: 78 AGCGDRVIPV 87 >gi|298248160|ref|ZP_06971965.1| Methyltransferase type 11 [Ktedonobacter racemifer DSM 44963] gi|297550819|gb|EFH84685.1| Methyltransferase type 11 [Ktedonobacter racemifer DSM 44963] Length = 300 Score = 37.1 bits (85), Expect = 3.7, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%) Query: 26 EKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRD 80 ++++A L PG +LDA G GG +R G V+ALD +P + + ++D Sbjct: 40 KQIVAWLQLTPGSRVLDAGCGGGGMTRLLAGAVGSGGEVVALDANPQLIEWNRSHVKD 97 >gi|283781143|ref|YP_003371898.1| O-methyltransferase family 2 [Pirellula staleyi DSM 6068] gi|283439596|gb|ADB18038.1| O-methyltransferase family 2 [Pirellula staleyi DSM 6068] Length = 352 Score = 37.1 bits (85), Expect = 3.7, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 34/93 (36%), Gaps = 14/93 (15%) Query: 22 PVLLEKVIALLNPAPGKVILDATFGAG-G-YSRSFCKMGSNVIALDRD-PFAVSCGQETM 78 PVL +L A + +LD G G G YS + + + A+ D P + E Sbjct: 173 PVLA----DVLPLAGDETLLD--LGGGTGIYSIALLRKYPQLRAIVLDRPEVLKVSHEFA 226 Query: 79 RDYK--EQFSLFQATFSQLQDYVPDKGVDGVVF 109 Y ++ L + GVD V+ Sbjct: 227 EQYGVADRLELLAG---DMFSAALPAGVDRVLL 256 >gi|253575778|ref|ZP_04853113.1| ribosomal RNA small subunit methyltransferase B [Paenibacillus sp. oral taxon 786 str. D14] gi|251844821|gb|EES72834.1| ribosomal RNA small subunit methyltransferase B [Paenibacillus sp. oral taxon 786 str. D14] Length = 506 Score = 37.1 bits (85), Expect = 3.7, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 4/92 (4%) Query: 28 VIALLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-E 83 V L+P PG +LD GG + + V+A D P ++ + + Sbjct: 295 VAEALDPQPGMNVLDCCAAPGGKTCHIAEIMEGRGRVLANDIHPHKAKLIEDHAKRLGLD 354 Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSS 115 QL + + D ++ D+ S Sbjct: 355 NVDTLSGDALQLAERLKAASFDRILLDVPCSG 386 >gi|167006005|ref|ZP_02271763.1| site-specific DNA methyltransferase, putative [Campylobacter jejuni subsp. jejuni 81-176] Length = 158 Score = 37.1 bits (85), Expect = 3.7, Method: Composition-based stats. Identities = 12/92 (13%), Positives = 30/92 (32%), Gaps = 10/92 (10%) Query: 51 SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFD 110 + + A++ D A E ++ + A ++ + + + ++ Sbjct: 31 AEALSNHALKAYAIELDVKAYKIALENAKNIDPNLEVIHANTFEILPKLIENSKNEIILY 90 Query: 111 LGVSSMQIDCGDRGFS------FQKSGPLDMR 136 L D + GFS + LD++ Sbjct: 91 LD---PPFDTRE-GFSDIYEKIYHFLENLDLK 118 >gi|297844572|ref|XP_002890167.1| hypothetical protein ARALYDRAFT_471841 [Arabidopsis lyrata subsp. lyrata] gi|297336009|gb|EFH66426.1| hypothetical protein ARALYDRAFT_471841 [Arabidopsis lyrata subsp. lyrata] Length = 274 Score = 37.1 bits (85), Expect = 3.7, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 14/94 (14%) Query: 34 PAPGKVILDATFGAGGYSRSFCKM--------GSNVIALDRDPFAVSCGQETMRDY---- 81 G +++DAT G G + + KM G V A+D A+ + Sbjct: 95 IQKGDMVIDATCGNGNDTLAMLKMVMNDSVGCGGYVYAMDIQKDAIESTSSLLDQAVGSK 154 Query: 82 -KEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGV 113 KE LF S++ + VP+ V V F+LG Sbjct: 155 EKECVKLFNICHSKMGEIVPENSRVRMVAFNLGY 188 >gi|313105817|ref|ZP_07792080.1| putative RNA methyltransferase [Pseudomonas aeruginosa 39016] gi|310878582|gb|EFQ37176.1| putative RNA methyltransferase [Pseudomonas aeruginosa 39016] Length = 450 Score = 37.1 bits (85), Expect = 3.8, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 54/162 (33%), Gaps = 23/162 (14%) Query: 22 PV---LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET- 77 PV ++ + + L P + +LD G G +S + + V+ ++ V Sbjct: 287 PVNESMIRQALDWLAPTADERVLDLFCGLGNFSLPLARRVARVVGVEGVAAMVERAGANA 346 Query: 78 MRDYKEQFSLFQATFSQLQDYVP--DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + + FQA S+ P ++G V+ D R G + Sbjct: 347 LANGLGNAHFFQADLSKALAEAPWAEQGFTAVLLD----------PPR------DGAFEA 390 Query: 136 RMSCSGISASDVVN-QANVKDLTRILGILGEEKQASRIAHAI 176 S + A VV N L R G + + + A + Sbjct: 391 VREMSSLGARRVVYVSCNPATLARDAGEMARQGYRLKRAGIL 432 >gi|227329137|ref|ZP_03833161.1| 23S rRNA 5-methyluridine methyltransferase [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 449 Score = 37.1 bits (85), Expect = 3.8, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 3/90 (3%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82 ++ + +A L+ P ILD G G ++ + ++V+ ++ V G+E + Sbjct: 285 MVAQALAWLDVQPQDRILDLFCGMGNFTLPLAQRAASVVGVEGVTALVEKGRENAQRNGL 344 Query: 83 EQFSLFQATFSQ--LQDYVPDKGVDGVVFD 110 + F Q +G D ++ D Sbjct: 345 SNVTFFHQNLEDDVTQQPWAAQGFDKILLD 374 >gi|107100389|ref|ZP_01364307.1| hypothetical protein PaerPA_01001414 [Pseudomonas aeruginosa PACS2] Length = 452 Score = 37.1 bits (85), Expect = 3.8, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 54/162 (33%), Gaps = 23/162 (14%) Query: 22 PV---LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET- 77 PV ++ + + L P + +LD G G +S + + V+ ++ V Sbjct: 289 PVNESMIRQALDWLAPTADERVLDLFCGLGNFSLPLARRVARVVGVEGVAAMVERAGANA 348 Query: 78 MRDYKEQFSLFQATFSQLQDYVP--DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + + FQA S+ P ++G V+ D R G + Sbjct: 349 LANGLGNAHFFQADLSKALAEAPWAEQGFTAVLLD----------PPR------DGAFEA 392 Query: 136 RMSCSGISASDVVN-QANVKDLTRILGILGEEKQASRIAHAI 176 S + A VV N L R G + + + A + Sbjct: 393 VREMSSLGARRVVYVSCNPATLARDAGEMARQGYRLKRAGIL 434 >gi|315638959|ref|ZP_07894130.1| type II DNA modification methylase EcaI [Campylobacter upsaliensis JV21] gi|315480988|gb|EFU71621.1| type II DNA modification methylase EcaI [Campylobacter upsaliensis JV21] Length = 368 Score = 37.1 bits (85), Expect = 3.9, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 28/62 (45%), Gaps = 1/62 (1%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83 +L ++IA+ + ++D G GG+ + +G I +D A+ Q+ ++ + Sbjct: 294 MLRRIIAM-SSNEDSRVMDCFCGGGGFLQEALNLGRKFIGIDEGIEAIKLNQKWLKASEN 352 Query: 84 QF 85 Sbjct: 353 HL 354 >gi|163788936|ref|ZP_02183381.1| putative sun protein [Flavobacteriales bacterium ALC-1] gi|159876173|gb|EDP70232.1| putative sun protein [Flavobacteriales bacterium ALC-1] Length = 403 Score = 37.1 bits (85), Expect = 3.9, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 3/41 (7%) Query: 28 VIALLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALD 65 V L+ PG ++D GAGG + + + VIA+D Sbjct: 216 VADFLDVKPGMKVVDVCAGAGGKTLHLAALMENKGQVIAMD 256 >gi|307091952|gb|ADN28311.1| putative rRNA methyltransferase [uncultured bacterium] Length = 123 Score = 37.1 bits (85), Expect = 3.9, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Query: 46 GAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ 96 G GG +R+ +G+ VIA++RD A+ QE Y + + A + Sbjct: 27 GPGGLTRALLALGARRVIAVERDDRAIVALQEVAARYPGRLDIVAADALEFD 78 >gi|241203944|ref|YP_002975040.1| dimethyladenosine transferase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857834|gb|ACS55501.1| dimethyladenosine transferase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 275 Score = 37.1 bits (85), Expect = 3.9, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 33/68 (48%), Gaps = 2/68 (2%) Query: 46 GAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ-DYVPDKG 103 G GG +R+ +G+ VIA++RDP + E Y + + + ++ + + +G Sbjct: 57 GPGGLTRAILALGARKVIAIERDPRCLPALAEIADHYPGRLEVIEGDALKIDFETLVPEG 116 Query: 104 VDGVVFDL 111 ++ +L Sbjct: 117 PVKIIANL 124 >gi|83814943|ref|YP_445647.1| rRNA methylase [Salinibacter ruber DSM 13855] gi|83756337|gb|ABC44450.1| Putative rRNA methylase superfamily [Salinibacter ruber DSM 13855] Length = 192 Score = 37.1 bits (85), Expect = 3.9, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 10/95 (10%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETM--RDY 81 +A G + +DAT G G+ +F G V+ D A+ + + Sbjct: 12 ALAGRAVGEGGIAVDATVGN-GHDTAFLAQAVGAGGAVVGFDVQEEALVETRHRLEREAL 70 Query: 82 KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGV 113 L A L ++ + V ++F+LG Sbjct: 71 SAPVRLVHAGHQTLARHLEEAERGRVGAIMFNLGY 105 >gi|15596130|ref|NP_249624.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas aeruginosa PAO1] gi|116048856|ref|YP_792343.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas aeruginosa UCBPP-PA14] gi|254239284|ref|ZP_04932607.1| hypothetical protein PACG_05477 [Pseudomonas aeruginosa C3719] gi|296390713|ref|ZP_06880188.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas aeruginosa PAb1] gi|20140268|sp|Q9I525|RUMA_PSEAE RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|122257963|sp|Q02I93|RUMA_PSEAB RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|9946837|gb|AAG04322.1|AE004527_9 probable RNA methyltransferase [Pseudomonas aeruginosa PAO1] gi|115584077|gb|ABJ10092.1| probable RNA methyltransferase [Pseudomonas aeruginosa UCBPP-PA14] gi|126171215|gb|EAZ56726.1| hypothetical protein PACG_05477 [Pseudomonas aeruginosa C3719] Length = 450 Score = 37.1 bits (85), Expect = 3.9, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 54/162 (33%), Gaps = 23/162 (14%) Query: 22 PV---LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET- 77 PV ++ + + L P + +LD G G +S + + V+ ++ V Sbjct: 287 PVNESMIRQALDWLAPTADERVLDLFCGLGNFSLPLARRVARVVGVEGVAAMVERAGANA 346 Query: 78 MRDYKEQFSLFQATFSQLQDYVP--DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135 + + FQA S+ P ++G V+ D R G + Sbjct: 347 LANGLGNAHFFQADLSKALAEAPWAEQGFTAVLLD----------PPR------DGAFEA 390 Query: 136 RMSCSGISASDVVN-QANVKDLTRILGILGEEKQASRIAHAI 176 S + A VV N L R G + + + A + Sbjct: 391 VREMSSLGARRVVYVSCNPATLARDAGEMARQGYRLKRAGIL 432 >gi|294628395|ref|ZP_06706955.1| methyltransferase [Streptomyces sp. e14] gi|292831728|gb|EFF90077.1| methyltransferase [Streptomyces sp. e14] Length = 426 Score = 37.1 bits (85), Expect = 3.9, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 1/81 (1%) Query: 24 LLEKV-IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82 LL +A L P G ++ D G+G ++ + G+ VIA+D DP A + + R + Sbjct: 237 LLRAAQLARLGPRVGDLVWDIGCGSGAFTAEAARSGAAVIAVDHDPDACARTEAAARSFG 296 Query: 83 EQFSLFQATFSQLQDYVPDKG 103 Q + + + +P+ Sbjct: 297 VQAHVVLGDAPHILENLPEPD 317 >gi|167745818|ref|ZP_02417945.1| hypothetical protein ANACAC_00512 [Anaerostipes caccae DSM 14662] gi|167654849|gb|EDR98978.1| hypothetical protein ANACAC_00512 [Anaerostipes caccae DSM 14662] Length = 245 Score = 37.1 bits (85), Expect = 3.9, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 2/92 (2%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQA 90 L + +LD G G + ++G +V D + + Y ++ L Q Sbjct: 33 LFAENNVQTVLDCACGTGQHLLMLDELGLSVCGSDYSAAMLKAAAVNLEKYGKKIPLQQC 92 Query: 91 TFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGD 122 F QLQ+ + D VV L S + + Sbjct: 93 DFRQLQEAYTE-KFDAVVC-LTTSLPHMHTDE 122 >gi|158425944|ref|YP_001527236.1| dimethyladenosine transferase [Azorhizobium caulinodans ORS 571] gi|172047844|sp|A8HVI9|RSMA_AZOC5 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|158332833|dbj|BAF90318.1| rRNA 16S rRNA dimethylase [Azorhizobium caulinodans ORS 571] Length = 291 Score = 37.1 bits (85), Expect = 4.0, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 1/46 (2%) Query: 46 GAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYKEQFSLFQA 90 G GG +R+ +G+ VIA++RD ++ E Y + + + Sbjct: 57 GPGGLTRALLALGARKVIAIERDHRCIAALNEIAAAYPGRLEIIEG 102 >gi|310822244|ref|YP_003954602.1| 2-(s)-hydroxypropyl-com dehydrogenase [Stigmatella aurantiaca DW4/3-1] gi|309395316|gb|ADO72775.1| 2-(S)-hydroxypropyl-CoM dehydrogenase [Stigmatella aurantiaca DW4/3-1] Length = 260 Score = 37.1 bits (85), Expect = 4.1, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 9/71 (12%) Query: 51 SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSL-------FQATFSQLQDYVPDKG 103 + +F + G V+ +DRD A+ E + + F + + G Sbjct: 25 AEAFVQAGCRVVVIDRDKRALQQAVEALGPTTAGITADVSDPASIHDAFLGVDRALG--G 82 Query: 104 VDGVVFDLGVS 114 VD ++ + G+S Sbjct: 83 VDVLIANAGIS 93 >gi|297570957|ref|YP_003696731.1| protein-(glutamine-N5) methyltransferase, release factor-specific [Arcanobacterium haemolyticum DSM 20595] gi|296931304|gb|ADH92112.1| protein-(glutamine-N5) methyltransferase, release factor-specific [Arcanobacterium haemolyticum DSM 20595] Length = 281 Score = 37.1 bits (85), Expect = 4.1, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 24/67 (35%), Gaps = 6/67 (8%) Query: 29 IALLN--PAPGKVILD-ATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKE 83 + L V++D T G+G + + V A++RD A + Y Sbjct: 101 LDALEKMTVENPVVVDLCT-GSGAIAIAIATEKPRTRVWAVERDETAYALATANNERYGN 159 Query: 84 QFSLFQA 90 + ++ Sbjct: 160 RVTIVHG 166 >gi|127513407|ref|YP_001094604.1| methyltransferase type 11 [Shewanella loihica PV-4] gi|126638702|gb|ABO24345.1| Methyltransferase type 11 [Shewanella loihica PV-4] Length = 335 Score = 37.1 bits (85), Expect = 4.1, Method: Composition-based stats. Identities = 12/29 (41%), Positives = 17/29 (58%) Query: 224 EIEELAQGLRSAEKALKAGGLLIVVSFHS 252 E +LA + A + LK GG L +V+ HS Sbjct: 140 EYSDLALSIPEAIRVLKPGGRLSLVTHHS 168 >gi|115376828|ref|ZP_01464052.1| 2-(S)-hydroxypropyl-CoM dehydrogenase [Stigmatella aurantiaca DW4/3-1] gi|115366190|gb|EAU65201.1| 2-(S)-hydroxypropyl-CoM dehydrogenase [Stigmatella aurantiaca DW4/3-1] Length = 261 Score = 37.1 bits (85), Expect = 4.1, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 9/71 (12%) Query: 51 SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSL-------FQATFSQLQDYVPDKG 103 + +F + G V+ +DRD A+ E + + F + + G Sbjct: 26 AEAFVQAGCRVVVIDRDKRALQQAVEALGPTTAGITADVSDPASIHDAFLGVDRALG--G 83 Query: 104 VDGVVFDLGVS 114 VD ++ + G+S Sbjct: 84 VDVLIANAGIS 94 >gi|159107917|ref|XP_001704233.1| Dimethyladenosine transferase [Giardia lamblia ATCC 50803] gi|157432290|gb|EDO76559.1| Dimethyladenosine transferase [Giardia lamblia ATCC 50803] Length = 316 Score = 37.1 bits (85), Expect = 4.1, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 27/49 (55%), Gaps = 3/49 (6%) Query: 51 SRSFCKMGSNVIALDRDPFAVSCGQETMR---DYKEQFSLFQATFSQLQ 96 + + + +VIA++ DP VS ++ + +Y+ +F++ F+++ Sbjct: 47 TLALLEKARHVIAIEIDPRMVSELKKRIAAIPEYRGKFTIIHKDFTKMP 95 >gi|313888449|ref|ZP_07822116.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845478|gb|EFR32872.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptoniphilus harei ACS-146-V-Sch2b] Length = 542 Score = 37.1 bits (85), Expect = 4.2, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 27/78 (34%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83 L +K I L P I D G G S S K G VI ++ AV +E Sbjct: 268 LYKKAIDYLEPKDDDKIYDLYCGVGSISLSVAKSGPEVIGIEIVESAVDDARENAEKNNI 327 Query: 84 QFSLFQATFSQLQDYVPD 101 + + + + + Sbjct: 328 KARFVHGPAEETIEKLWE 345 >gi|297530825|ref|YP_003672100.1| short-chain dehydrogenase/reductase SDR [Geobacillus sp. C56-T3] gi|297254077|gb|ADI27523.1| short-chain dehydrogenase/reductase SDR [Geobacillus sp. C56-T3] Length = 247 Score = 37.1 bits (85), Expect = 4.2, Method: Composition-based stats. Identities = 34/186 (18%), Positives = 59/186 (31%), Gaps = 40/186 (21%) Query: 51 SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFD 110 +R+F K G+NV+ +DRD + G + Sbjct: 20 ARAFAKQGANVVIIDRDIQ---------------------NGEAFAAQLQSDGFKAIFAA 58 Query: 111 LGVSSMQIDCGDRGFSFQKS-----GPLDMRMSCSGISASDVVNQANVKDLTRILGILGE 165 V ++D +R F + G +D ++ +G+S + V++ +L Sbjct: 59 ADV--RKVDDIER---FVQEAAGRFGRIDYLINNAGVSRWKSPYELTVEEWDDVLSTNLR 113 Query: 166 EKQASRIAHAIVKRRQSA-----PFQTTQDLSSLIQKTVYFSKNNR----IHPATRSFQA 216 + A RR + +T+ L S Y + H SF Sbjct: 114 SAFFASREAAKYMRRNAKGGAIVNIASTRALMSEPNSEAYAASKGGLVALTHALAVSFAD 173 Query: 217 LRIFVN 222 RI VN Sbjct: 174 DRIRVN 179 >gi|197119722|ref|YP_002140149.1| rRNA methyltransferase [Geobacter bemidjiensis Bem] gi|197089082|gb|ACH40353.1| rRNA methyltransferase, putative [Geobacter bemidjiensis Bem] Length = 192 Score = 37.1 bits (85), Expect = 4.2, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 6/85 (7%) Query: 34 PAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK--EQFSLF 88 PG LDAT G G + ++ G V A D P A++ + + L Sbjct: 22 VRPGDRALDATCGNGFDTLLLAELAGEGGEVWAFDVQPRAIAATRALLEREGRLATVHLL 81 Query: 89 QATFSQLQDYVPDKGVDGVVFDLGV 113 +A ++ ++VP G+ VF+LG Sbjct: 82 EAGHERVSEFVP-VGLAAAVFNLGY 105 >gi|317153229|ref|YP_004121277.1| ribosomal L11 methyltransferase [Desulfovibrio aespoeensis Aspo-2] gi|316943480|gb|ADU62531.1| ribosomal L11 methyltransferase [Desulfovibrio aespoeensis Aspo-2] Length = 291 Score = 37.1 bits (85), Expect = 4.2, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 10/52 (19%) Query: 34 PAPGKVILD-AT----FGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRD 80 PG+ LD T G G CK+G I LD DP A+ C +E Sbjct: 145 IEPGQSFLDLGTGSGILGIG-----LCKLGLTGIGLDIDPQAIECARENAEA 191 >gi|257357706|dbj|BAI23332.1| putative methyltransferase [Streptomyces griseus] Length = 255 Score = 37.1 bits (85), Expect = 4.2, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 11/101 (10%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83 L E+ + L P ++D G G +RS ++VIA++ DP + + + Sbjct: 28 LPEEAVDWLVPDGCATVVDLAAGTGALTRSLVHRVAHVIAVEPDPRMLGALRRNL--PGS 85 Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSS-MQIDCGDR 123 + T Q+ +PD D V+ VS +R Sbjct: 86 R--ALSGTGEQIP--LPDGEADAVL----VSMAWHWLDPER 118 >gi|332159191|ref|YP_004424470.1| hypothetical protein PNA2_1552 [Pyrococcus sp. NA2] gi|331034654|gb|AEC52466.1| hypothetical protein PNA2_1552 [Pyrococcus sp. NA2] Length = 279 Score = 37.1 bits (85), Expect = 4.3, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 4/86 (4%) Query: 29 IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCG--QETMRDYKEQ-- 84 + +NP G+V+LD G G + K G+ VI +++D + +D + Sbjct: 117 VNTVNPRKGEVVLDTCMGLGYTAIESAKRGARVITIEKDENVIQLAKINPWSKDLFDSPL 176 Query: 85 FSLFQATFSQLQDYVPDKGVDGVVFD 110 + +L D+ D ++ D Sbjct: 177 IKIIHGDSYELVRKFEDEIFDAIIHD 202 >gi|48477962|ref|YP_023668.1| methyltransferase [Picrophilus torridus DSM 9790] gi|48430610|gb|AAT43475.1| methyltransferase [Picrophilus torridus DSM 9790] Length = 173 Score = 37.1 bits (85), Expect = 4.3, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 11/81 (13%) Query: 28 VIALLNPAPGKVILDATFGAG-GYSRSFC----KMGSNVIALDRDPFAVSCGQETMRDYK 82 V+ ++N P I+D FGAG GY S V A++ D A+S E + D Sbjct: 21 VLEVMNIQPDDRIID--FGAGDGY-YSILFSNFLRCGYVYAIENDDEAISMINERIND-N 76 Query: 83 EQFSLFQATFSQLQDYVPDKG 103 ++ + ++ +P+ Sbjct: 77 KKVQVINGDLCDME--LPEHN 95 >gi|320167290|gb|EFW44189.1| tRNA and rRNA cytosine-C5-methylase [Capsaspora owczarzaki ATCC 30864] Length = 546 Score = 37.1 bits (85), Expect = 4.4, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 23/68 (33%), Gaps = 2/68 (2%) Query: 50 YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQLQDYVPDK-GVDGV 107 + + + +V A D DP Q MR + F +++ P V + Sbjct: 287 HVAALVGLKGHVHAFDLDPRRFKTMQNAMRKFGASNVECMNGNFLEIKPTDPKYAKVSAI 346 Query: 108 VFDLGVSS 115 + D S Sbjct: 347 LLDPSCSG 354 >gi|282882011|ref|ZP_06290652.1| rRNA methylase [Peptoniphilus lacrimalis 315-B] gi|281298041|gb|EFA90496.1| rRNA methylase [Peptoniphilus lacrimalis 315-B] Length = 181 Score = 37.1 bits (85), Expect = 4.4, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 7/79 (8%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMRDY 81 +++++ N GK +DAT G G + K V A D A++ +E ++ Sbjct: 11 VDEILK--NDFKGKSAVDATMGMGNDTEKLLKVVGEKGKVFAFDVQDQAINYCKEKFKNI 68 Query: 82 K--EQFSLFQATFSQLQDY 98 E + L+++ Sbjct: 69 NNLEILKISHEFIDILENF 87 >gi|271969629|ref|YP_003343825.1| SAM-dependent methyltransferase [Streptosporangium roseum DSM 43021] gi|270512804|gb|ACZ91082.1| SAM-dependent methyltransferase, putative [Streptosporangium roseum DSM 43021] Length = 258 Score = 37.1 bits (85), Expect = 4.4, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 3/55 (5%) Query: 29 IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83 + LL+P PG+ I+D G G + G+ V+ +D + + Y Sbjct: 31 VELLDPQPGERIVDLGCGTGVLTAEITSRGARVLGIDGSSAMIEKA---LAQYPG 82 >gi|169334036|ref|ZP_02861229.1| hypothetical protein ANASTE_00429 [Anaerofustis stercorihominis DSM 17244] gi|169258753|gb|EDS72719.1| hypothetical protein ANASTE_00429 [Anaerofustis stercorihominis DSM 17244] Length = 185 Score = 37.1 bits (85), Expect = 4.4, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 5/85 (5%) Query: 33 NPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK-EQFSLF 88 G ++LD T G G + K V A D AV ++ + + + L Sbjct: 16 KVVSGNIVLDMTMGNGNDTLYLSKKVGEKGKVYAFDIQSQAVKNTKKLLDENRINNAVLI 75 Query: 89 QATFSQLQDYVPDKGVDGVVFDLGV 113 + + +YV D VD V++LG Sbjct: 76 NDSHENVLNYVTD-KVDFAVYNLGY 99 >gi|88812357|ref|ZP_01127607.1| 23S rRNA methyltransferase/RumA [Nitrococcus mobilis Nb-231] gi|88790364|gb|EAR21481.1| 23S rRNA methyltransferase/RumA [Nitrococcus mobilis Nb-231] Length = 450 Score = 37.1 bits (85), Expect = 4.5, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 4/91 (4%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR-DYK 82 L+E+ IALL P +LD G G ++ + ++V+ L+ D V +E + Sbjct: 284 LVERAIALLALQPQDRVLDLYCGLGNFAFCIARQVASVVGLEGDDALVERARENAARNAI 343 Query: 83 EQFSLFQATFSQL---QDYVPDKGVDGVVFD 110 +A S+ ++ GV V+ D Sbjct: 344 TNVVFQRADLSRGIAELAHLQRDGVSRVLLD 374 >gi|323703882|ref|ZP_08115516.1| RNA methyltransferase, TrmA family [Desulfotomaculum nigrificans DSM 574] gi|323531170|gb|EGB21075.1| RNA methyltransferase, TrmA family [Desulfotomaculum nigrificans DSM 574] Length = 462 Score = 37.1 bits (85), Expect = 4.6, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 3/91 (3%) Query: 23 VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR-DY 81 VL K + N + ++DA G G + + +VI L+ P AV+ +E R + Sbjct: 299 VLYNKALEFANLKGDETVVDAYCGIGTIASLLARHAGSVIGLEIVPDAVTDARENARLNN 358 Query: 82 KEQFSLFQATFSQLQDYVPDKGV--DGVVFD 110 F + +L + +G+ D VV D Sbjct: 359 LFNIEFFNGSVERLLPEMVARGLRPDLVVLD 389 >gi|146220118|gb|ABQ11273.1| putative methyltransferase [uncultured bacterium] Length = 247 Score = 37.1 bits (85), Expect = 4.6, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 10/76 (13%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDR-----DPFAVSCGQETMR 79 ++++IALL G +LD G G +S F + G V +DR D S +E ++ Sbjct: 31 VDQMIALLGLKSGGAVLDLCSGIGRHSIEFARRGFKVTGVDRTTPYLDQARSSAAKENLK 90 Query: 80 DYKEQFSLFQATFSQL 95 ++ + Sbjct: 91 -----IEFVRSDMREF 101 >gi|325190286|emb|CCA24762.1| trimethylguanosine synthase putative [Albugo laibachii Nc14] Length = 753 Score = 36.7 bits (84), Expect = 4.6, Method: Composition-based stats. Identities = 19/123 (15%), Positives = 43/123 (34%), Gaps = 18/123 (14%) Query: 38 KVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQL 95 ++D G GG + + +VIA++ DP + + + Y ++ Sbjct: 596 GTVVDLFAGCGGNTIQLAQTCHHVIAIEIDPLRIHKAKHNAQVYGVSDRIEWICG---DA 652 Query: 96 QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS--GPLDMRMS--CSGISASDVVNQA 151 + + D + S G ++ + DM ++ CSG+ +V++ Sbjct: 653 LEVISRLQADVIFL-----SPPWG----GLNYSRDVYSLKDMMINESCSGVDLFQLVSKV 703 Query: 152 NVK 154 Sbjct: 704 TEN 706 >gi|76803145|ref|YP_331240.1| S-adenosylmethionine-dependent methyltransferase 1 [Natronomonas pharaonis DSM 2160] gi|76559010|emb|CAI50608.1| S-adenosylmethionine-dependent methyltransferase 1 [Natronomonas pharaonis DSM 2160] Length = 208 Score = 36.7 bits (84), Expect = 4.7, Method: Composition-based stats. Identities = 9/75 (12%), Positives = 27/75 (36%), Gaps = 5/75 (6%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83 + ++ + + G +LD G G + + +V LD+ ++ + + Sbjct: 33 MRDEALTWFDIDDGDRVLDVGCGTGFATEGLLEHTDDVWGLDQSAHQLAKAY---AKFGK 89 Query: 84 Q--FSLFQATFSQLQ 96 + + + +L Sbjct: 90 RGTVNFHRGDAERLP 104 >gi|157369542|ref|YP_001477531.1| type 12 methyltransferase [Serratia proteamaculans 568] gi|157321306|gb|ABV40403.1| Methyltransferase type 12 [Serratia proteamaculans 568] Length = 251 Score = 36.7 bits (84), Expect = 4.7, Method: Composition-based stats. Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 2/46 (4%) Query: 51 SRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQ 94 S + V A+D DP ++ + + Y ++ + QA + Sbjct: 56 SLRILQRFPQARVTAVDLDPLLLAIARGALAQYGDRIRIIQADLAD 101 >gi|198453432|ref|XP_001359198.2| GA16116 [Drosophila pseudoobscura pseudoobscura] gi|198132356|gb|EAL28342.2| GA16116 [Drosophila pseudoobscura pseudoobscura] Length = 479 Score = 36.7 bits (84), Expect = 4.7, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 2/60 (3%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96 VILDA G GG + F VIA+D D ++ + Y ++ A F Q Sbjct: 303 VILDAFCGCGGNAIQFALTCGRVIAVDIDAEKLAMAKHNATIYGVADKIEFIHADFLQFA 362 >gi|195152013|ref|XP_002016933.1| GL21793 [Drosophila persimilis] gi|194111990|gb|EDW34033.1| GL21793 [Drosophila persimilis] Length = 479 Score = 36.7 bits (84), Expect = 4.7, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 2/60 (3%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96 VILDA G GG + F VIA+D D ++ + Y ++ A F Q Sbjct: 303 VILDAFCGCGGNAIQFALTCGRVIAVDIDAEKLAMAKHNATIYGVADKIEFIHADFLQFA 362 >gi|28210208|ref|NP_781152.1| putative rRNA methylase [Clostridium tetani E88] gi|28202644|gb|AAO35089.1| putative rRNA methylase [Clostridium tetani E88] Length = 192 Score = 36.7 bits (84), Expect = 4.7, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 34/85 (40%), Gaps = 9/85 (10%) Query: 35 APGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQFS---LF 88 G + +DAT G G + CK+ V + D A+ ++ + Y+ L Sbjct: 25 KKGDIAVDATMGNGNDTLFLCKLVEEEGKVYSFDIQMEALKSTEKKL--YQNNIHWAELI 82 Query: 89 QATFSQLQDYVPDKGVDGVVFDLGV 113 + Y+ ++ ++F+LG Sbjct: 83 LDGHENMDKYLKEEP-KIILFNLGY 106 >gi|126175348|ref|YP_001051497.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella baltica OS155] gi|226725386|sp|A3D7B5|RUMA_SHEB5 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|125998553|gb|ABN62628.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shewanella baltica OS155] Length = 450 Score = 36.7 bits (84), Expect = 4.8, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 2/89 (2%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82 ++ + + L PA + ILD G G +S KMG++VI ++ V+ + + Sbjct: 292 MVAQAMDWLAPALDERILDLFCGMGNFSLPLAKMGADVIGVEGVAEMVTQARVNAKANNL 351 Query: 83 EQFSLFQATFSQLQDYVPDKG-VDGVVFD 110 ++ + F S P G +D ++ D Sbjct: 352 DKLTFFHGDLSADLSLEPWMGKIDKLLLD 380 >gi|325569856|ref|ZP_08145850.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus casseliflavus ATCC 12755] gi|325156979|gb|EGC69147.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus casseliflavus ATCC 12755] Length = 458 Score = 36.7 bits (84), Expect = 4.8, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 35/100 (35%), Gaps = 17/100 (17%) Query: 21 VPVLLEKVIALLNPAPGKVILD-----ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQ 75 VL ++ + L+ + + ++D T G S V +D P A+ Q Sbjct: 297 TSVLYQEGVKALDLSKNETVVDAYCGVGTIG-----LSVAPYAKEVRGMDIIPQAIENAQ 351 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFD 110 E Q + ++ ++ +P D ++ D Sbjct: 352 ENAHRIGAQNTHYET--GTAEELLPKWFNEGFKPDSIIVD 389 >gi|269962459|ref|ZP_06176808.1| ribosomal protein L11 methyltransferase [Vibrio harveyi 1DA3] gi|269832755|gb|EEZ86865.1| ribosomal protein L11 methyltransferase [Vibrio harveyi 1DA3] Length = 295 Score = 36.7 bits (84), Expect = 4.8, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 21/102 (20%) Query: 17 IGDH-VPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG------SNVIALDRDPF 69 G H L + + L+ GK ++D FG G + VI +D DP Sbjct: 140 TGTHPTTALCLEWLESLDL-SGKTVID--FGCG---SGILAIAAIKLGAGKVIGIDIDPQ 193 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDL 111 A+ ++ QL+ Y+P +G++ D+ Sbjct: 194 ALQASRDNAER--------NGVADQLEVYLPQNQPEGLIADV 227 >gi|225164363|ref|ZP_03726627.1| Fmu (Sun) domain protein [Opitutaceae bacterium TAV2] gi|224801016|gb|EEG19348.1| Fmu (Sun) domain protein [Opitutaceae bacterium TAV2] Length = 226 Score = 36.7 bits (84), Expect = 4.8, Method: Composition-based stats. Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 10/97 (10%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALD--------RDPFAVSCGQET 77 I LL P G++ILDA GG S + ++ALD R +S Sbjct: 32 AIDLLAPVAGELILDACAAPGGKSLAIADRMGRGRLVALDLPVQARQLRLAENLSRAPAG 91 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 + + QF+L Q + + + G D V+ D+ S Sbjct: 92 VATERIQFNLLQPGSGAVLNKIAPHGFDAVLIDVPCS 128 >gi|323136513|ref|ZP_08071595.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Methylocystis sp. ATCC 49242] gi|322398587|gb|EFY01107.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Methylocystis sp. ATCC 49242] Length = 238 Score = 36.7 bits (84), Expect = 4.9, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 3/62 (4%) Query: 22 PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQETMRD 80 P++L +++ P PG+ LD G GYS + + V+AL+ DP + + + Sbjct: 83 PLVLARLLQGAAPRPGEKALD--IGGAGYSAAILSGLVGEVVALESDPELAARARAGLSA 140 Query: 81 YK 82 Sbjct: 141 LG 142 >gi|319951686|ref|YP_004162953.1| fmu (sun) domain protein [Cellulophaga algicola DSM 14237] gi|319420346|gb|ADV47455.1| Fmu (Sun) domain protein [Cellulophaga algicola DSM 14237] Length = 408 Score = 36.7 bits (84), Expect = 4.9, Method: Composition-based stats. Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 3/41 (7%) Query: 28 VIALLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALD 65 V L+ PG+ ++D GAGG + + + +IA+D Sbjct: 216 VAEFLDVKPGQRVIDTCAGAGGKTLHIAALMENKGQLIAMD 256 >gi|229822540|ref|YP_002884066.1| Methyltransferase type 11 [Beutenbergia cavernae DSM 12333] gi|229568453|gb|ACQ82304.1| Methyltransferase type 11 [Beutenbergia cavernae DSM 12333] Length = 319 Score = 36.7 bits (84), Expect = 4.9, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 14/87 (16%) Query: 36 PGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95 PG V++DA G G ++ + G +V+ +DR P ++ +E + Q +L Sbjct: 101 PGSVVMDAACGTGRHTSWLAEQGYDVLGVDRSPDMLAIAREKV----PSARFAQGAVHEL 156 Query: 96 QDYVPDKGVDGVVF--------DLGVS 114 V + VD VV DLG S Sbjct: 157 P--VAEASVDLVVVTLALSHVRDLGPS 181 >gi|254511064|ref|ZP_05123131.1| NOL1/NOP2/sun family protein [Rhodobacteraceae bacterium KLH11] gi|221534775|gb|EEE37763.1| NOL1/NOP2/sun family protein [Rhodobacteraceae bacterium KLH11] Length = 387 Score = 36.7 bits (84), Expect = 4.9, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 33/92 (35%), Gaps = 7/92 (7%) Query: 26 EKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQF 85 + VIA L+ PG +LD G GG + + GS V A MRD + Sbjct: 207 QAVIAALDLQPGMRVLDYCAGGGGKTLALAARGSGVQVF-----AHDANPGRMRDLPARA 261 Query: 86 SLFQATFSQL--QDYVPDKGVDGVVFDLGVSS 115 A + L D V+ D+ S Sbjct: 262 QRAGADIAILTQDQVAARAPFDIVLVDVPCSG 293 >gi|256823499|ref|YP_003147462.1| type 11 methyltransferase [Kangiella koreensis DSM 16069] gi|256797038|gb|ACV27694.1| Methyltransferase type 11 [Kangiella koreensis DSM 16069] Length = 325 Score = 36.7 bits (84), Expect = 4.9, Method: Composition-based stats. Identities = 9/28 (32%), Positives = 16/28 (57%) Query: 224 EIEELAQGLRSAEKALKAGGLLIVVSFH 251 E +L + L+ LK GG++ ++S H Sbjct: 129 EYSDLKKSLQHCFNCLKPGGIISIISHH 156 >gi|220933384|ref|YP_002512283.1| sun protein [Thioalkalivibrio sp. HL-EbGR7] gi|219994694|gb|ACL71296.1| sun protein [Thioalkalivibrio sp. HL-EbGR7] Length = 432 Score = 36.7 bits (84), Expect = 4.9, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 29/84 (34%), Gaps = 3/84 (3%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDYKEQFSLFQA 90 PG +LDA GG + + + ++ ALD D + +E + + L Sbjct: 241 CRPGMRVLDACAAPGGKTLHLLESVAGDLDLTALDVDAERLRRVEENLARAGRRARLVAG 300 Query: 91 TFSQLQDYVPDKGVDGVVFDLGVS 114 + D ++ D S Sbjct: 301 DGEHPAQWHEGGAYDRILLDAPCS 324 >gi|237748441|ref|ZP_04578921.1| methyltransferase type 11 [Oxalobacter formigenes OXCC13] gi|229379803|gb|EEO29894.1| methyltransferase type 11 [Oxalobacter formigenes OXCC13] Length = 279 Score = 36.7 bits (84), Expect = 4.9, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 16/95 (16%) Query: 22 PVLLEKVIALLNPAPGKVILDATFGAGG-----YSRSFCKMGSNVIALDRDPFAVSCGQE 76 PV IA L G+ +LD G+GG + K +VI +D P + + Sbjct: 71 PV----AIAAL--QDGQTVLD--LGSGGGFDVFQAGEKVKAAGHVIGVDMTPEMLEKARH 122 Query: 77 TMRDYKEQ--FSLFQATFSQLQDY-VPDKGVDGVV 108 +R Y+E+ + +++ V D VD V+ Sbjct: 123 NIRQYRERTGLDNVEFRLGEIEHLPVADNTVDVVL 157 >gi|7649806|dbj|BAA94092.1| short chain alcohol dehydrogenase [Geobacillus thermoleovorans] Length = 249 Score = 36.7 bits (84), Expect = 4.9, Method: Composition-based stats. Identities = 34/186 (18%), Positives = 60/186 (32%), Gaps = 40/186 (21%) Query: 51 SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFD 110 +R+F K G+NV+ +DRD + G + + Sbjct: 22 ARAFAKQGANVVIIDRDIQ---------------------NGEAFAAQLQSDGFEAIFVA 60 Query: 111 LGVSSMQIDCGDRGFSFQKS-----GPLDMRMSCSGISASDVVNQANVKDLTRILGILGE 165 V ++D +R F + G +D ++ +G+S + V++ +L Sbjct: 61 ADV--RKVDDIER---FVQEAAGRFGRIDYLINNAGVSRWKSPYELTVEEWDDVLSTNLR 115 Query: 166 EKQASRIAHAIVKRRQSA-----PFQTTQDLSSLIQKTVYFSKNNR----IHPATRSFQA 216 + A RR + +T+ L S Y + H SF Sbjct: 116 SAFFASREAAKYMRRNAKGGAIVNIASTRALMSEPNSEAYAASKGGLVAMTHALAVSFAD 175 Query: 217 LRIFVN 222 RI VN Sbjct: 176 DRIRVN 181 >gi|237745481|ref|ZP_04575961.1| 23S rRNA 5-methyluridine methyltransferase [Oxalobacter formigenes HOxBLS] gi|229376832|gb|EEO26923.1| 23S rRNA 5-methyluridine methyltransferase [Oxalobacter formigenes HOxBLS] Length = 451 Score = 36.7 bits (84), Expect = 5.0, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 39/99 (39%), Gaps = 5/99 (5%) Query: 17 IGDHV-PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQ 75 + H+ PVL+ + I LL I D G G +S + + V+ ++ + Sbjct: 275 VNHHINPVLVSRAIRLLEIEKNDRIADLFCGLGNFSLPIARHAAEVVGIEGSEILTERAK 334 Query: 76 E--TMRDYKEQFSLFQATFSQL--QDYVPDKGVDGVVFD 110 E + +E+ ++ +D++ D V+ D Sbjct: 335 ESALLNGLEEKTRFETRNLFEMTVKDWIGLGPFDKVLID 373 >gi|91784217|ref|YP_559423.1| hypothetical protein Bxe_A1584 [Burkholderia xenovorans LB400] gi|91688171|gb|ABE31371.1| Conserved hypothetical protein [Burkholderia xenovorans LB400] Length = 199 Score = 36.7 bits (84), Expect = 5.0, Method: Composition-based stats. Identities = 17/45 (37%), Positives = 25/45 (55%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETM 78 A G +LD GAG ++R F +G V A+DRD A++ E + Sbjct: 25 VAAGGAVLDVACGAGRHARFFAALGHPVTAIDRDAAALATLCEEL 69 >gi|50551677|ref|XP_503313.1| YALI0D26367p [Yarrowia lipolytica] gi|49649181|emb|CAG81519.1| YALI0D26367p [Yarrowia lipolytica] Length = 464 Score = 36.7 bits (84), Expect = 5.0, Method: Composition-based stats. Identities = 17/101 (16%), Positives = 36/101 (35%), Gaps = 6/101 (5%) Query: 146 DVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT--QDLSSLIQKTVYFSK 203 D++N + ++ R L + +E A + T + L +I + + Sbjct: 56 DILNDHELSEIHRGLEEIKKE----WAAGTFKEEEGDEDIHTANERRLGEIIGRDISGKV 111 Query: 204 NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 + + +R++V E+ E+ L K L G Sbjct: 112 HTGRSRNDQVATDMRLYVRKELGEIRNLLADFIKVLINRGK 152 >gi|195569943|ref|XP_002102968.1| GD19221 [Drosophila simulans] gi|194198895|gb|EDX12471.1| GD19221 [Drosophila simulans] Length = 629 Score = 36.7 bits (84), Expect = 5.0, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 2/60 (3%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96 VILDA G GG + F VIA+D D ++ + Y + A F Q Sbjct: 464 VILDAFCGCGGNAIQFANTCGRVIAVDIDAEKLAMAKHNAGIYGVAHKIEFIHADFLQFA 523 >gi|195348905|ref|XP_002040987.1| GM15294 [Drosophila sechellia] gi|194122592|gb|EDW44635.1| GM15294 [Drosophila sechellia] Length = 629 Score = 36.7 bits (84), Expect = 5.0, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 2/60 (3%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96 VILDA G GG + F VIA+D D ++ + Y + A F Q Sbjct: 464 VILDAFCGCGGNAIQFANTCGRVIAVDIDAEKLAMAKHNAGIYGVAHKIEFIHADFLQFA 523 >gi|45656700|ref|YP_000786.1| zinc binding dehydrogenase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45599936|gb|AAS69423.1| zinc binding dehydrogenase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 348 Score = 36.7 bits (84), Expect = 5.0, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 8/72 (11%) Query: 45 FGAGG---YSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYV 99 FG GG ++ + + VIALD D A+ + D + + L++ Sbjct: 176 FGCGGLGIHAVAIARAMTKGKVIALDVDSGALENATKYGADEVVNLKEVRNSGKVLKEV- 234 Query: 100 PDKGVDGVVFDL 111 KGVD ++ D Sbjct: 235 -SKGVD-LLADF 244 >gi|332188118|ref|ZP_08389848.1| ubiE/COQ5 methyltransferase family protein [Sphingomonas sp. S17] gi|332011832|gb|EGI53907.1| ubiE/COQ5 methyltransferase family protein [Sphingomonas sp. S17] Length = 228 Score = 36.7 bits (84), Expect = 5.1, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 2/54 (3%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMR 79 ++A L P G+ ++D G G ++ + VI LD D A+ + Sbjct: 33 MLAALAPKAGETVVDVGCGTGSFALMLKQAEPRTQVIGLDPDAEALDIARHKAA 86 >gi|315150202|gb|EFT94218.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0012] Length = 456 Score = 36.7 bits (84), Expect = 5.1, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 32/98 (32%), Gaps = 17/98 (17%) Query: 23 VLLEKVIALLNPAPGKVILD-----ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77 +L + I L+ P + ++D T G S K V +D P A+ + Sbjct: 297 ILYNEGIKALDLQPNETVVDAYCGVGTIG-----LSLAKQAHQVRGMDTIPAAIDDARFN 351 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFD 110 + + +D +P D +V D Sbjct: 352 AKRLG--VTNTHYAVGTAEDLLPKWFKEGFKPDAIVVD 387 >gi|262199896|ref|YP_003271105.1| methyltransferase type 11 [Haliangium ochraceum DSM 14365] gi|262083243|gb|ACY19212.1| Methyltransferase type 11 [Haliangium ochraceum DSM 14365] Length = 267 Score = 36.7 bits (84), Expect = 5.1, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 33/96 (34%), Gaps = 3/96 (3%) Query: 29 IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLF 88 I L +LD G G +S + G +V + D P VS E R Sbjct: 54 IEQLKARGKTKVLDVATGTGFHSIRLLEAGFDVTSADGSPEMVSKAFENARRRGHILKTV 113 Query: 89 QATFSQLQDYVPDKGVDGVVFDLGVS-SMQIDCGDR 123 QA + + D V+ LG S + DR Sbjct: 114 QADWR-WLNRDIQGKYDAVIC-LGNSFTHLFAEADR 147 >gi|227519503|ref|ZP_03949552.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis TX0104] gi|227073028|gb|EEI10991.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis TX0104] Length = 456 Score = 36.7 bits (84), Expect = 5.1, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 32/98 (32%), Gaps = 17/98 (17%) Query: 23 VLLEKVIALLNPAPGKVILD-----ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77 +L + I L+ P + ++D T G S K V +D P A+ + Sbjct: 297 ILYNEGIKALDLQPNETVVDAYCGVGTIG-----LSLAKQAHQVRGMDTIPAAIDDARFN 351 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFD 110 + + +D +P D +V D Sbjct: 352 AKRLG--VTNTHYAVGTAEDLLPKWFKEGFKPDAIVVD 387 >gi|323453896|gb|EGB09767.1| selenoprotein [Aureococcus anophagefferens] Length = 279 Score = 36.7 bits (84), Expect = 5.1, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 28/81 (34%), Gaps = 9/81 (11%) Query: 33 NPAPGKVILDATFG-AGG----YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSL 87 N PG+V++D G G + VI +D P +S + Y S Sbjct: 27 NLKPGEVVVD--LGSGAGVDCFAAAKLVGPSGRVIGVDMTPEMLSRARAAAAPYGNVVSF 84 Query: 88 FQATFSQLQDYVPDKGVDGVV 108 L V D VD V+ Sbjct: 85 RLGEIEHLP--VGDGAVDCVI 103 >gi|111224401|ref|YP_715195.1| putative methyltransferase [Frankia alni ACN14a] gi|111151933|emb|CAJ63655.1| Putative methyltransferase [Frankia alni ACN14a] Length = 281 Score = 36.7 bits (84), Expect = 5.1, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 4/56 (7%) Query: 22 PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77 PV + +++ P P V LDA G G Y+ G VI +DR P ++ + Sbjct: 64 PV-VREIVD---PLPVGVALDAACGTGRYAEFLAGRGHRVIGVDRSPDMLARARTR 115 >gi|294828297|ref|NP_713534.2| Zn-dependent alcohol dehydrogenase [Leptospira interrogans serovar Lai str. 56601] gi|293386148|gb|AAN50552.2| Zn-dependent alcohol dehydrogenase [Leptospira interrogans serovar Lai str. 56601] Length = 343 Score = 36.7 bits (84), Expect = 5.2, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 8/72 (11%) Query: 45 FGAGG---YSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYV 99 FG GG ++ + + VIALD D A+ + D + + L++ Sbjct: 171 FGCGGLGIHAVAIARAMTKGKVIALDVDSGALENATKYGADEVVNLKEVRNSGKVLKEV- 229 Query: 100 PDKGVDGVVFDL 111 KGVD ++ D Sbjct: 230 -SKGVD-LLADF 239 >gi|319787470|ref|YP_004146945.1| RNA methyltransferase, TrmA family [Pseudoxanthomonas suwonensis 11-1] gi|317465982|gb|ADV27714.1| RNA methyltransferase, TrmA family [Pseudoxanthomonas suwonensis 11-1] Length = 449 Score = 36.7 bits (84), Expect = 5.3, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 59/157 (37%), Gaps = 25/157 (15%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83 ++ + + +L+ +P +LD G G ++ + V+ ++ DP V+ + E Sbjct: 291 MIARALEMLDTSPDHRVLDLFCGLGNFTLPLARQVREVVGVEGDPGLVARARAN----AE 346 Query: 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGIS 143 + L A F DL RG + + G + + Sbjct: 347 RNGLANARF--------------FAADL-------TQDQRGTPWMRQGFDRLLLDPPRSG 385 Query: 144 ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 A +V+ Q ++D+ RI+ + +R A +V R Sbjct: 386 AEEVLKQLPLQDIDRIVYVSCHPGSLARDAGFLVNER 422 >gi|158313747|ref|YP_001506255.1| methyltransferase type 11 [Frankia sp. EAN1pec] gi|158109152|gb|ABW11349.1| Methyltransferase type 11 [Frankia sp. EAN1pec] Length = 304 Score = 36.7 bits (84), Expect = 5.3, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 30/83 (36%), Gaps = 4/83 (4%) Query: 32 LNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91 L APG I+D G+G +S + + G V +D A+ + Sbjct: 74 LGLAPGSRIIDVPCGSGRHSLALAERGHRVTGVDLSAEAIEHARRAAAATGTAVEFVLG- 132 Query: 92 FSQLQDYVPDKGVDGVVFDLGVS 114 +++ P D V LG S Sbjct: 133 --DMREIAPSGSFDAAVC-LGNS 152 >gi|296447122|ref|ZP_06889054.1| Methyltransferase type 12 [Methylosinus trichosporium OB3b] gi|296255391|gb|EFH02486.1| Methyltransferase type 12 [Methylosinus trichosporium OB3b] Length = 208 Score = 36.7 bits (84), Expect = 5.4, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 4/68 (5%) Query: 45 FGAG-GY-SRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP 100 G+G G+ + + + + A+D P + E + + + + +A F Sbjct: 55 LGSGPGHLACAILRRCRIESYHAIDFSPAMHALAHEHLAEASSRVTFVEADFRSNSWAAG 114 Query: 101 DKGVDGVV 108 GVD VV Sbjct: 115 LAGVDAVV 122 >gi|167623152|ref|YP_001673446.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella halifaxensis HAW-EB4] gi|226725389|sp|B0TK00|RUMA_SHEHH RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|167353174|gb|ABZ75787.1| RNA methyltransferase, TrmA family [Shewanella halifaxensis HAW-EB4] Length = 445 Score = 36.7 bits (84), Expect = 5.4, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 2/89 (2%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82 ++ + + L+P + +LD G G +S K G+ VI ++ V + + Sbjct: 287 MVSQAVEWLSPKADERVLDLFCGIGNFSLPLAKDGAEVIGVEGVQAMVEQARINAKQSGL 346 Query: 83 EQFSLFQATFS-QLQDYVPDKGVDGVVFD 110 ++ S + A S L VD ++ D Sbjct: 347 DKVSFYHADLSADLSKEPWLGKVDKMLID 375 >gi|120435407|ref|YP_861093.1| ribosomal RNA small subunit methyltransferase B [Gramella forsetii KT0803] gi|117577557|emb|CAL66026.1| ribosomal RNA small subunit methyltransferase B [Gramella forsetii KT0803] Length = 403 Score = 36.7 bits (84), Expect = 5.4, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 3/43 (6%) Query: 26 EKVIALLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALD 65 ++V LL+ PG ++D GAGG + + + +IALD Sbjct: 214 QRVAELLDVKPGMRVVDTCAGAGGKTLHLAALMENKGQIIALD 256 >gi|27364635|ref|NP_760163.1| ribosomal protein L11 methyltransferase [Vibrio vulnificus CMCP6] gi|320155029|ref|YP_004187408.1| ribosomal protein L11 methyltransferase [Vibrio vulnificus MO6-24/O] gi|38605292|sp|Q8DD03|PRMA_VIBVU RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11 Mtase gi|27360780|gb|AAO09690.1| ribosomal protein L11 methyltransferase [Vibrio vulnificus CMCP6] gi|319930341|gb|ADV85205.1| ribosomal protein L11 methyltransferase [Vibrio vulnificus MO6-24/O] Length = 295 Score = 36.7 bits (84), Expect = 5.5, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 39/102 (38%), Gaps = 21/102 (20%) Query: 17 IGDH-VPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS------NVIALDRDPF 69 G H L + + L+ GK ++D FG G + + VI +D DP Sbjct: 140 TGTHPTTALCLEWLESLDL-SGKTVID--FGCG---SGILAIAAIKLGAEKVIGIDIDPQ 193 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDL 111 A+ ++ + QL Y+P +G++ D+ Sbjct: 194 ALLASKDNAQR--------NGVADQLDVYLPQDQPEGLLADV 227 >gi|324999674|ref|ZP_08120786.1| methylase involved in ubiquinone/menaquinone biosynthesis [Pseudonocardia sp. P1] Length = 413 Score = 36.7 bits (84), Expect = 5.5, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 28/71 (39%), Gaps = 4/71 (5%) Query: 46 GAGGYSRSFCK--MGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG 103 G G + + G+ V+A+D ++ +++ + S A L + + Sbjct: 64 GTGVSTEALLTTVKGAEVVAVDASTEMLAVA--RRKNWSPRVSFVHAKLETLAEAGIEGP 121 Query: 104 VDGVVFDLGVS 114 DG++ VS Sbjct: 122 FDGILASYLVS 132 >gi|197121748|ref|YP_002133699.1| methyltransferase type 11 [Anaeromyxobacter sp. K] gi|196171597|gb|ACG72570.1| Methyltransferase type 11 [Anaeromyxobacter sp. K] Length = 244 Score = 36.7 bits (84), Expect = 5.5, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 44/129 (34%), Gaps = 19/129 (14%) Query: 26 EKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDYK 82 + V+ L G V DA G G +S + V A+D +P ++ +E RD Sbjct: 77 DAVVEALRLPEGGVACDAGAGPGYFSLRMARAVGPRGRVYAIDVEPRMIALLRERARDAG 136 Query: 83 -EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSG 141 + +T +P + D ++ F G D+R S Sbjct: 137 VDNVHPLLST--DGAPALPPEPCDAILVVN------------TFHHFHDGAADLRRLASR 182 Query: 142 I-SASDVVN 149 + +VN Sbjct: 183 LKPGGRLVN 191 >gi|55379669|ref|YP_137519.1| methyltransferase [Haloarcula marismortui ATCC 43049] gi|55232394|gb|AAV47813.1| methyltransferase [Haloarcula marismortui ATCC 43049] Length = 252 Score = 36.7 bits (84), Expect = 5.5, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 11/82 (13%) Query: 28 VIALLNPAPGKVILDATFGAG-GY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQF 85 V+ LL+P PG+ +LD G G G+ + G+ V+ +D A + RD Sbjct: 25 VVDLLDPHPGEQVLD--VGCGTGHLTAEIADSGAEVVGID----ASAEMVAQARDAYPTL 78 Query: 86 SLFQATFSQLQDYVPDKGVDGV 107 + Q + ++ Y D+ D V Sbjct: 79 TFEQ---ADVRSYTADRPFDAV 97 >gi|19745534|ref|NP_606670.1| SAM-dependent methyltransferase [Streptococcus pyogenes MGAS8232] gi|21909811|ref|NP_664079.1| SAM-dependent methyltransferase [Streptococcus pyogenes MGAS315] gi|28896496|ref|NP_802846.1| SAM-dependent methyltransferase [Streptococcus pyogenes SSI-1] gi|139474349|ref|YP_001129065.1| SAM-dependent methyltransferase [Streptococcus pyogenes str. Manfredo] gi|306827944|ref|ZP_07461211.1| rRNA methylase [Streptococcus pyogenes ATCC 10782] gi|19747654|gb|AAL97169.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232] gi|21903997|gb|AAM78882.1| conserved hypothetical protein [Streptococcus pyogenes MGAS315] gi|28811750|dbj|BAC64679.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1] gi|134272596|emb|CAM30863.1| putative rRNA methylase [Streptococcus pyogenes str. Manfredo] gi|304429863|gb|EFM32905.1| rRNA methylase [Streptococcus pyogenes ATCC 10782] Length = 184 Score = 36.7 bits (84), Expect = 5.5, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 2/72 (2%) Query: 43 ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQLQDYVPD 101 AT G G + ++ V A D A+ E + L A + YV + Sbjct: 26 ATMGNGNDTAFLAQLAKKVYAFDVQEQAIRKTSERLAQLGLSNAELILAGHEAVDQYVTE 85 Query: 102 KGVDGVVFDLGV 113 V +F+LG Sbjct: 86 P-VRAAIFNLGY 96 >gi|312129034|ref|YP_003996374.1| fmu (sun) domain protein [Leadbetterella byssophila DSM 17132] gi|311905580|gb|ADQ16021.1| Fmu (Sun) domain protein [Leadbetterella byssophila DSM 17132] Length = 395 Score = 36.7 bits (84), Expect = 5.6, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 39/96 (40%), Gaps = 10/96 (10%) Query: 26 EKVIALLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82 +++ L+P G+ I+D GAGG + + + ++ALD + + ++ + Sbjct: 209 QEIAHFLDPQAGEFIVDTCAGAGGKTLHLADLSRNKAKILALDVEEGKLEELEKRAA--R 266 Query: 83 EQFSLFQA---TFSQLQDYVPDKGVDGVVFDLGVSS 115 + S + L Y D V+ D+ S Sbjct: 267 NRVSQVETSLWNNDILDQYRGQ--ADAVLMDVPCSG 300 >gi|240281250|gb|EER44753.1| s-adenosylmethionine (SAM)-dependent methyltransferase [Ajellomyces capsulatus H143] gi|325092258|gb|EGC45568.1| s-adenosylmethionine (SAM)-dependent methyltransferase [Ajellomyces capsulatus H88] Length = 288 Score = 36.7 bits (84), Expect = 5.6, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 43/102 (42%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPF 69 S+ + VP L KV+ LNP P +LD G G ++ SF +V+ +D P Sbjct: 15 SAEAYQESAAFVPKLAHKVLQYLNPQPTDRVLDVGCGDGKFTSSFIPHIKSVLGVDASPS 74 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDL 111 +S ++ K F + + + + + D V +L Sbjct: 75 MISSAKQHYGIPKADFRVVDCRYLDREQDILNGAWDKVSLEL 116 >gi|153004217|ref|YP_001378542.1| type 11 methyltransferase [Anaeromyxobacter sp. Fw109-5] gi|152027790|gb|ABS25558.1| Methyltransferase type 11 [Anaeromyxobacter sp. Fw109-5] Length = 217 Score = 36.7 bits (84), Expect = 5.6, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 37/86 (43%), Gaps = 5/86 (5%) Query: 26 EKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK 82 ++V++ L PG V DA G G ++ + V A+D D ++ ++ R+ Sbjct: 49 DEVVSALGLRPGDVACDAGAGPGYFAIRLARAVGPTGRVHAIDVDARMIALLEQRAREAG 108 Query: 83 EQFSLFQATFSQLQDYVPDKGVDGVV 108 + + + + +P + D ++ Sbjct: 109 --VTNVRPLHAPEGEGLPPEPCDAIL 132 >gi|15674524|ref|NP_268698.1| SAM-dependent methyltransferase [Streptococcus pyogenes M1 GAS] gi|71910130|ref|YP_281680.1| SAM-dependent methyltransferase [Streptococcus pyogenes MGAS5005] gi|13621627|gb|AAK33419.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS] gi|71852912|gb|AAZ50935.1| SAM-dependent methyltransferase [Streptococcus pyogenes MGAS5005] Length = 184 Score = 36.7 bits (84), Expect = 5.6, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 2/72 (2%) Query: 43 ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQLQDYVPD 101 AT G G + ++ V A D A+ E + L A + YV + Sbjct: 26 ATMGNGNDTAFLAQLAKKVYAFDVQEQAIRKTSERLAQLGLSNAELILAGHEAVDQYVTE 85 Query: 102 KGVDGVVFDLGV 113 V +F+LG Sbjct: 86 P-VRAAIFNLGY 96 >gi|299535356|ref|ZP_07048678.1| SAM-dependent methyltransferase [Lysinibacillus fusiformis ZC1] gi|298729117|gb|EFI69670.1| SAM-dependent methyltransferase [Lysinibacillus fusiformis ZC1] Length = 191 Score = 36.7 bits (84), Expect = 5.6, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 31/87 (35%), Gaps = 8/87 (9%) Query: 33 NPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK--EQFS 86 N G ++DAT G G+ F V A D AV + D+ + Sbjct: 17 NIEEGDTVVDATAGN-GHDTLFLAQLVGDEGQVYAFDVQKEAVDATLLRLLDHGLEHRAL 75 Query: 87 LFQATFSQLQDYVPDKGVDGVVFDLGV 113 + ++ +V V +F+LG Sbjct: 76 VLNKGHEEVTQFVHKP-VTAAIFNLGY 101 >gi|298705525|emb|CBJ28792.1| similar to trimethylguanosine synthase homolog [Ectocarpus siliculosus] Length = 548 Score = 36.7 bits (84), Expect = 5.6, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 39/118 (33%), Gaps = 15/118 (12%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96 V++D G GG + F + V A+D DP + + Y ++ Sbjct: 243 VVVDPFVGCGGNAVQFALVAHLVFAIDIDPVKLEHARRNAAIYGVEDRIEFILG---DAM 299 Query: 97 DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM-RMSCSGISASDVVNQANV 153 +P D V S S+Q S D+ M +SA ++ A Sbjct: 300 KVLPTLKADAVFL-----SPPWGGP----SYQGSKTFDLDSMIPHPLSALEMFRAARE 348 >gi|22297753|ref|NP_681000.1| RNA-binding protein [Thermosynechococcus elongatus BP-1] gi|22293930|dbj|BAC07762.1| RNA-binding protein [Thermosynechococcus elongatus BP-1] Length = 442 Score = 36.7 bits (84), Expect = 5.6, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 7/61 (11%) Query: 30 ALLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFS 86 LL+P PG+V++DA GG + + VIA DR P + + +++ Sbjct: 246 HLLDPQPGEVVIDACAAPGGKTTHIAELMEDQGRVIACDRSPHRL----RKLAQNRDRLG 301 Query: 87 L 87 L Sbjct: 302 L 302 >gi|325287453|ref|YP_004263243.1| Fmu (Sun) domain-containing protein [Cellulophaga lytica DSM 7489] gi|324322907|gb|ADY30372.1| Fmu (Sun) domain protein [Cellulophaga lytica DSM 7489] Length = 403 Score = 36.7 bits (84), Expect = 5.7, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 3/39 (7%) Query: 30 ALLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALD 65 L+ PG+ ++D GAGG + + + +IALD Sbjct: 218 HFLDVKPGQRVVDTCAGAGGKTLHIAALMENKGQLIALD 256 >gi|317485118|ref|ZP_07944000.1| methyltransferase domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316923653|gb|EFV44857.1| methyltransferase domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 408 Score = 36.7 bits (84), Expect = 5.7, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 18/96 (18%) Query: 22 PVLLEKVIALLNPAPGKVILDATFGAGG-----YSRSFCKMGSNVIALDRDPFAVSCGQE 76 PV IA L G+ ++D G+GG + K VI +D P ++ ++ Sbjct: 201 PV----AIAAL--REGQTVVD--LGSGGGFDVFQAGEKVKASGRVIGVDMTPEMLAKARK 252 Query: 77 TMRDYKEQFSLFQATFSQLQDY----VPDKGVDGVV 108 + Y+++ L F L + VPD VD V+ Sbjct: 253 NIGQYRQRTGLDNVEFR-LGEIECLPVPDNSVDVVL 287 >gi|283782180|ref|YP_003372935.1| methyltransferase type 11 [Pirellula staleyi DSM 6068] gi|283440633|gb|ADB19075.1| Methyltransferase type 11 [Pirellula staleyi DSM 6068] Length = 245 Score = 36.7 bits (84), Expect = 5.7, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 8/88 (9%) Query: 26 EKVIALLNPAPGKVILDATFGAG-GYSRSFCKMG----SNVIALDRDPFAVSCGQETMRD 80 ++++A L PG + D GAG GY + VIA+D + + D Sbjct: 80 DEIVAALALTPGATVAD--IGAGTGYMVAHLSKAAGKDGTVIAIDASTQMIEYLTKRSAD 137 Query: 81 YKEQFSLFQATFSQLQDYVPDKGVDGVV 108 + + VDGV+ Sbjct: 138 LGP-AKIVPRMVRPDDPEIQPDSVDGVL 164 >gi|255932973|ref|XP_002557957.1| Pc12g11390 [Penicillium chrysogenum Wisconsin 54-1255] gi|211582576|emb|CAP80766.1| Pc12g11390 [Penicillium chrysogenum Wisconsin 54-1255] Length = 236 Score = 36.7 bits (84), Expect = 5.7, Method: Composition-based stats. Identities = 33/194 (17%), Positives = 67/194 (34%), Gaps = 38/194 (19%) Query: 33 NPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMRDYK--EQFSLF 88 PA +++DA GAGG + +F G + A++++P + C + + Y ++ + F Sbjct: 68 APAGRSILVDAFAGAGGNTIAFALTGKWKRIYAIEKNPAVLKCAKHNAKVYGVEDKITWF 127 Query: 89 QA-TFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDV 147 + F L++ + + VVF S ++ +++ Sbjct: 128 EGDCFEILKNQLKELAPYSVVFA----SPPWGGPG----YRSDRVFNLK----------- 168 Query: 148 VNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRI 207 L R+ + +V T DL + + K + Sbjct: 169 --TMEPYSLQRLYDEYS------VFSKHMVLY-----IPRTSDLKQIAKLVPAGGKATVM 215 Query: 208 HPATR-SFQALRIF 220 H + +AL IF Sbjct: 216 HYCMEGASKALCIF 229 >gi|194289304|ref|YP_002005211.1| hypothetical protein RALTA_A1180 [Cupriavidus taiwanensis LMG 19424] gi|193223139|emb|CAQ69144.1| conserved hypothetical protein [Cupriavidus taiwanensis LMG 19424] Length = 195 Score = 36.7 bits (84), Expect = 5.8, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 22/51 (43%) Query: 35 APGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQF 85 PG +LD G G ++ G V+A+DRD A++ + + Sbjct: 23 RPGARVLDLACGGGRHAAWLAARGHQVLAVDRDADAIAGLPAGLTGVTGRV 73 >gi|220916542|ref|YP_002491846.1| Methyltransferase type 11 [Anaeromyxobacter dehalogenans 2CP-1] gi|219954396|gb|ACL64780.1| Methyltransferase type 11 [Anaeromyxobacter dehalogenans 2CP-1] Length = 231 Score = 36.7 bits (84), Expect = 5.8, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 44/129 (34%), Gaps = 19/129 (14%) Query: 26 EKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDYK 82 + V+ L G V DA G G +S + V A+D +P ++ +E RD Sbjct: 64 DAVVEALRLPDGGVACDAGAGPGYFSLRMARAVGPRGRVYAIDVEPRMIALLRERARDAG 123 Query: 83 -EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSG 141 + +T +P + D ++ F G D+R S Sbjct: 124 VDNVHPLLST--DGAPALPPEPCDAILVVN------------TFHHFHDGAADLRRLASR 169 Query: 142 I-SASDVVN 149 + +VN Sbjct: 170 LKPGGRLVN 178 >gi|319407809|emb|CBI81460.1| SUN-family protein [Bartonella sp. 1-1C] Length = 456 Score = 36.7 bits (84), Expect = 5.9, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 5/69 (7%) Query: 48 GGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSL-FQATFSQLQDYVPDKGVDG 106 GG + G++V+ALD + + +R+ ++ + L+++ PD+ D Sbjct: 266 GGKTAQLALQGADVMALD----ISANRLKRLRENMDRLNFSVHYWLGDLREFHPDQLFDA 321 Query: 107 VVFDLGVSS 115 V+ D SS Sbjct: 322 VLLDTPCSS 330 >gi|190894349|ref|YP_001984642.1| ribitol 2-dehydrogenase [Rhizobium etli CIAT 652] gi|190700010|gb|ACE94092.1| ribitol 2-dehydrogenase protein [Rhizobium etli CIAT 652] gi|327191868|gb|EGE58863.1| ribitol 2-dehydrogenase protein [Rhizobium etli CNPAF512] Length = 241 Score = 36.7 bits (84), Expect = 5.9, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 9/69 (13%) Query: 51 SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFD 110 + + G V+ +DRD A++ + + L + + DG++ Sbjct: 23 TEAIIAAGGTVVMIDRDEAALAAACGRLGEKAIALPLDLLNHADCAGLL-----DGILSK 77 Query: 111 LGVSSMQID 119 +G Q+D Sbjct: 78 VG----QLD 82 >gi|115400383|ref|XP_001215780.1| conserved hypothetical protein [Aspergillus terreus NIH2624] gi|114191446|gb|EAU33146.1| conserved hypothetical protein [Aspergillus terreus NIH2624] Length = 173 Score = 36.7 bits (84), Expect = 5.9, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 61/149 (40%), Gaps = 17/149 (11%) Query: 35 APGK--VILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMRDYK--EQFSLF 88 AP V++DA GAGG + +F + G + A++++P + C + + Y ++ + F Sbjct: 5 APDGRSVLIDAFAGAGGNAIAFARSGKWKRIYAIEKNPSVLLCAKHNAKIYGVADKITWF 64 Query: 89 QA-TFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDV 147 + F +++ + D VVF S ++ ++R + S + + Sbjct: 65 EGDCFEIIKNQLKDLAPYSVVFA----SPPWGGPG----YRSDKIFNLR-TMEPYSLATL 115 Query: 148 VNQANVKDLTRILGILGEEKQASRIAHAI 176 + + I+ L ++A + Sbjct: 116 YQEYSAFS-EHIVLFLPRTSDLRQLAKVV 143 >gi|77734465|emb|CAJ26221.1| hypothetical protein [Thermotoga naphthophila RKU-10] Length = 203 Score = 36.7 bits (84), Expect = 6.0, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 18/92 (19%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR-------- 79 ++ + GK +LD G G ++ K G V+ +D P ++ +E + Sbjct: 6 ILENFHIR-GKKVLDVACGEGTFAVEIAKQGFEVVGVDLSPEMLNFARERAKEESVPVIF 64 Query: 80 --------DYKEQFSLFQATFSQLQDYVPDKG 103 D+ E+F + F L +Y+ + Sbjct: 65 LKKDMRELDFHEEFDIVTCWFDSL-NYLLEYK 95 >gi|325696391|gb|EGD38282.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis SK160] Length = 456 Score = 36.3 bits (83), Expect = 6.1, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 36/93 (38%), Gaps = 12/93 (12%) Query: 23 VLLEKVIALLNPAPGKVILD-----ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77 VL E+ + L+ ++D T G +F K ++ +D P A+ + Sbjct: 291 VLYEEAVKALDVTKEDHLIDAYCGVGTIGF-----AFAKRVKSLRGMDIIPEAIEDAKRN 345 Query: 78 MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFD 110 + +L++A ++ +P +G D Sbjct: 346 AKKMGFDNTLYEA--GTAEEIIPRWYAEGYRAD 376 >gi|253576645|ref|ZP_04853973.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251844059|gb|EES72079.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 198 Score = 36.3 bits (83), Expect = 6.1, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 10/91 (10%) Query: 41 LDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETM----RDYKEQFSLFQATFS 93 +DAT G G + K V A D P A++ + + D +L QA+ + Sbjct: 25 VDATAGTGADTLFLAKACGPKGRVFAFDIQPQALALTKARLDKEPADSIAGVTLLQASHA 84 Query: 94 QLQDYVPDK---GVDGVVFDLGVSSMQIDCG 121 + +P + V+F+LG + Sbjct: 85 DMAAVLPADVHGRLGAVMFNLGYLPAEGADP 115 >gi|117619085|ref|YP_855944.1| tRNA and rRNA cytosine-C5-methylase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560492|gb|ABK37440.1| tRNA and rRNA cytosine-C5-methylase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 437 Score = 36.3 bits (83), Expect = 6.1, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 46/112 (41%), Gaps = 15/112 (13%) Query: 26 EKVIALLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82 ++V A L +PG ++DA GAGG + + + ++A+D + + + ++ R Sbjct: 249 QQVAAALEVSPGMRVIDACAGAGGKTLHLAAMMEGKGRLLAMDVEEWKLENLKQRARRAG 308 Query: 83 -EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQI----------DCGDR 123 T S+ + + D V+ D+ S + + D +R Sbjct: 309 AHNVETRVITSSKTVKRLKE-SADRVLLDVPCSGLGVLKRNPDAKWRDTAER 359 >gi|116251330|ref|YP_767168.1| dimethyladenosine transferase [Rhizobium leguminosarum bv. viciae 3841] gi|118600891|sp|Q1MJ01|RSMA_RHIL3 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase gi|115255978|emb|CAK07059.1| putative dimethyladenosine transferase [Rhizobium leguminosarum bv. viciae 3841] Length = 275 Score = 36.3 bits (83), Expect = 6.1, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 6/55 (10%) Query: 42 DATF-----GAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYKEQFSLFQA 90 DAT G GG +R+ +G+ VIA++RD + E Y + + + Sbjct: 48 DATVFEVGPGPGGLTRAILALGARKVIAIERDTRCLPALAEIADHYPGRLEVIEG 102 >gi|150398714|ref|YP_001329181.1| Fmu (Sun) domain-containing protein [Sinorhizobium medicae WSM419] gi|150030229|gb|ABR62346.1| Fmu (Sun) domain protein [Sinorhizobium medicae WSM419] Length = 429 Score = 36.3 bits (83), Expect = 6.1, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 31/86 (36%), Gaps = 5/86 (5%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84 V L+ P G+ +LD G GG + + V A D D ++ E ++ + Sbjct: 223 VADLVFPREGEQVLDYCAGGGGKTLAISAAMNNKGQVHAYDADRKRLAPIIERLKRAGTR 282 Query: 85 FSLFQATFSQLQDYVPDKGVDGVVFD 110 T L V D V+ D Sbjct: 283 NVQVHETAGSLASLVGR--ADRVLVD 306 >gi|74318405|ref|YP_316145.1| DNA primase [Thiobacillus denitrificans ATCC 25259] gi|74057900|gb|AAZ98340.1| DNA primase [Thiobacillus denitrificans ATCC 25259] Length = 565 Score = 36.3 bits (83), Expect = 6.1, Method: Composition-based stats. Identities = 27/142 (19%), Positives = 47/142 (33%), Gaps = 24/142 (16%) Query: 43 ATFGAG---GYSRSFCKMGSNV-IALDRDPFAVSCGQ-------ETMRDYKEQFSLFQAT 91 AT G ++R+ + + A D D E ++D KE LF Sbjct: 271 ATLGTATTPVHARTLLRHSDRLVYAFDGDAAGRKAAWRALENSLEALQDGKEVSFLFLPE 330 Query: 92 FSQLQDYVPDKGVDGVVFDLG-----VSSMQIDCGDRGFSFQKSGPLDMRMSCSGI--SA 144 Y+ D G D + L +S+ + RG LD + + + A Sbjct: 331 GEDPDSYIRDHGCDAFLRLLDNETLPLSAFLMRELARG------RRLDTQEGQATLLKDA 384 Query: 145 SDVVNQANVKDLTRILGILGEE 166 ++ + L R++ E Sbjct: 385 KPLLEKIGAPLLARLIQRQIAE 406 >gi|331084302|ref|ZP_08333407.1| hypothetical protein HMPREF0992_02331 [Lachnospiraceae bacterium 6_1_63FAA] gi|330401837|gb|EGG81414.1| hypothetical protein HMPREF0992_02331 [Lachnospiraceae bacterium 6_1_63FAA] Length = 190 Score = 36.3 bits (83), Expect = 6.2, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 1/73 (1%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETM-RDYKE 83 L++V + ILD GAG +S + K G+ V D + +E +++ E Sbjct: 46 LKQVYEEMQIDEHTRILDIGCGAGRFSLALAKSGAQVTGTDVSSEMIMAAKELAEKEHLE 105 Query: 84 QFSLFQATFSQLQ 96 S F A ++ L Sbjct: 106 NVSFFHADWASLD 118 >gi|319791338|ref|YP_004152978.1| sun protein [Variovorax paradoxus EPS] gi|315593801|gb|ADU34867.1| sun protein [Variovorax paradoxus EPS] Length = 456 Score = 36.3 bits (83), Expect = 6.2, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 8/90 (8%) Query: 29 IALLNPAPGKV----ILDATFGAGGYSRSFCKMGS----NVIALDRDPFAVSCGQETMRD 80 + L PA V +LDA GG + ++ VIAL+ DP ET+ Sbjct: 254 LEGLLPAKPGVAPLRVLDACAAPGGKTAHLLELAGPGAAEVIALEVDPIRSRRIDETLAR 313 Query: 81 YKEQFSLFQATFSQLQDYVPDKGVDGVVFD 110 Q + A ++ D+ D ++ D Sbjct: 314 LGLQAKVVVADAARPADWWDGTPFDAILLD 343 >gi|258574653|ref|XP_002541508.1| conserved hypothetical protein [Uncinocarpus reesii 1704] gi|237901774|gb|EEP76175.1| conserved hypothetical protein [Uncinocarpus reesii 1704] Length = 175 Score = 36.3 bits (83), Expect = 6.2, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 5/76 (6%) Query: 39 VILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYK--EQFSLFQA-TFS 93 +++DA G GG + +F + V A+++DP + C + + Y ++ + F+ F Sbjct: 76 IMIDAFAGVGGNAIAFARSNKWKRVYAIEKDPAVLQCAKHNAKIYGVEDKITWFEGDCFE 135 Query: 94 QLQDYVPDKGVDGVVF 109 ++ Y+ D G V+F Sbjct: 136 TIRLYLKDLGPYSVIF 151 >gi|303257419|ref|ZP_07343432.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] gi|331000630|ref|ZP_08324285.1| hypothetical protein HMPREF9439_01933 [Parasutterella excrementihominis YIT 11859] gi|302859776|gb|EFL82854.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47] gi|329570902|gb|EGG52610.1| hypothetical protein HMPREF9439_01933 [Parasutterella excrementihominis YIT 11859] Length = 561 Score = 36.3 bits (83), Expect = 6.3, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 4/55 (7%) Query: 26 EKVIALLNPAPGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVSCGQETM 78 ++++ L PG LD G+G + +MG + +D DP AV + + Sbjct: 146 QELLDSLEAKPGASFLDPCCGSG--TFLILAQEMGLKICGMDSDPIAVMIAKANL 198 >gi|312796682|ref|YP_004029604.1| Tellurite resistance protein tehB [Burkholderia rhizoxinica HKI 454] gi|312168457|emb|CBW75460.1| Tellurite resistance protein tehB [Burkholderia rhizoxinica HKI 454] Length = 206 Score = 36.3 bits (83), Expect = 6.4, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 6/59 (10%) Query: 32 LNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQA 90 L P +LD G G + R F + G V+ALDRD A++ E + A Sbjct: 16 LVPR-DGTVLDVACGRGRHVRWFAQRGHPVVALDRDAQALAALAEW-----PTVRIVHA 68 >gi|330934993|ref|XP_003304787.1| hypothetical protein PTT_17463 [Pyrenophora teres f. teres 0-1] gi|311318443|gb|EFQ87106.1| hypothetical protein PTT_17463 [Pyrenophora teres f. teres 0-1] Length = 240 Score = 36.3 bits (83), Expect = 6.4, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 10/74 (13%) Query: 11 SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDP 68 I + I H+ + P VI+DA G GG S + + G V A+++DP Sbjct: 54 EPIANKIAAHIS----ES----APKEKTVIIDAFAGVGGNSIALARSGRWERVFAIEKDP 105 Query: 69 FAVSCGQETMRDYK 82 + C + Y Sbjct: 106 KTLMCAKHNAEIYG 119 >gi|304404973|ref|ZP_07386633.1| putative rRNA methylase [Paenibacillus curdlanolyticus YK9] gi|304345852|gb|EFM11686.1| putative rRNA methylase [Paenibacillus curdlanolyticus YK9] Length = 196 Score = 36.3 bits (83), Expect = 6.6, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 11/91 (12%) Query: 34 PAPGKVILDATFGAGGYSRSFCKM-GSN--VIALDRDPFAVSCGQETMRDYKEQ-----F 85 +PG ++DAT G G +R ++ G V A D A+ +E + +++ Sbjct: 18 VSPGDAVIDATAGNGVDTRFLAELVGPRGAVYAFDIQEAALLATRERLAPLEDEGRLPAL 77 Query: 86 SLFQATFSQLQDYV---PDKGVDGVVFDLGV 113 L + ++ +V + V+F+LG Sbjct: 78 QLVLDSHERMAAHVQPKHAGAIAAVMFNLGY 108 >gi|254385550|ref|ZP_05000876.1| methylase [Streptomyces sp. Mg1] gi|194344421|gb|EDX25387.1| methylase [Streptomyces sp. Mg1] Length = 257 Score = 36.3 bits (83), Expect = 6.6, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 4/66 (6%) Query: 24 LLEKVIALLNPAPGKVILD--ATFGAGGYSRS-FCKMGSNVIALDRDPFAVSCGQETMRD 80 L + A L P G V++D GA G + + G + A D DP A++ + + Sbjct: 77 LASEA-AALTPRAGAVVVDLCCGVGALGAAVADRVGGGVQLHAADIDPVALAYARRNVAP 135 Query: 81 YKEQFS 86 Y + Sbjct: 136 YGGRVH 141 >gi|153835710|ref|ZP_01988377.1| ribosomal protein L11 methyltransferase [Vibrio harveyi HY01] gi|148867643|gb|EDL66931.1| ribosomal protein L11 methyltransferase [Vibrio harveyi HY01] Length = 295 Score = 36.3 bits (83), Expect = 6.6, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 21/102 (20%) Query: 17 IGDH-VPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS------NVIALDRDPF 69 G H L + + L+ GK ++D FG G + + VI +D DP Sbjct: 140 TGTHPTTALCLEWLEGLDL-SGKTVID--FGCG---SGILAIAAIKLGAEKVIGIDIDPQ 193 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDL 111 A+ ++ QL+ ++P +G++ D+ Sbjct: 194 ALQASRDNAER--------NGVADQLEVFLPQNQPEGLIADV 227 >gi|332995096|gb|AEF05151.1| hypothetical protein ambt_18290 [Alteromonas sp. SN2] Length = 264 Score = 36.3 bits (83), Expect = 6.6, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 31/78 (39%), Gaps = 7/78 (8%) Query: 40 ILDATFGAGGYSRSFCKMGSNVIALDRDP-------FAVSCGQETMRDYKEQFSLFQATF 92 ++DAT G G + +G V ++R P + Q+ + E+ +L Sbjct: 108 VVDATPGLGRDAFVLVSVGCKVTMIERSPIVAALLEDGIRRLQQRFPELAERLALQHGNS 167 Query: 93 SQLQDYVPDKGVDGVVFD 110 + + Y + VD + D Sbjct: 168 ADVMQYWNGENVDAIYLD 185 >gi|320593302|gb|EFX05711.1| RNA methylase family [Grosmannia clavigera kw1407] Length = 348 Score = 36.3 bits (83), Expect = 6.6, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 5/69 (7%) Query: 37 GKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVSCGQETMRDY---KEQFSLFQAT 91 +++D G GG + +F K VI ++RD ++C Q + + + Sbjct: 84 DAILVDMFAGVGGNTIAFARSKRWGRVIGIERDAATLACAQNNAALFELADDAITWVHGD 143 Query: 92 FSQLQDYVP 100 L D + Sbjct: 144 CFDLVDRLR 152 >gi|315221991|ref|ZP_07863902.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus anginosus F0211] gi|315188957|gb|EFU22661.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus anginosus F0211] Length = 452 Score = 36.3 bits (83), Expect = 6.7, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 10/65 (15%) Query: 23 VLLEKVIALLNPAPGKVILD-----ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77 VL + + L+ ++D T G +F K ++ +D P A+ + Sbjct: 291 VLYNEAVKALDVDSEDCLIDAYCGVGTIGF-----AFAKKVKSLRGMDIIPEAIEDAKRN 345 Query: 78 MRDYK 82 + Sbjct: 346 AKKMG 350 >gi|294626669|ref|ZP_06705266.1| biotin synthesis protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294665860|ref|ZP_06731128.1| biotin synthesis protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292599089|gb|EFF43229.1| biotin synthesis protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292604370|gb|EFF47753.1| biotin synthesis protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 232 Score = 36.3 bits (83), Expect = 6.7, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 9/104 (8%) Query: 15 HTIGDHVPVLLEKVIALLNPAP----GKVILDATFGAGGYSRSFCKMGSN-VIALDRDPF 69 + H PV+L + A+L P G+ +LDA G+G Y + G+ V +D P Sbjct: 20 YPPHAHNPVMLAEERAMLALMPSSLQGQHVLDAGCGSGRYMLHALRRGARQVTGVDLSPQ 79 Query: 70 AVSCGQETMRD--YKEQFSLFQATFSQ--LQDYVPDKGVDGVVF 109 + + + L Q + L D V D V G+V Sbjct: 80 MLHRAGAELARDWPAARIVLQQGSLDHLPLADTVTDLSVCGLVL 123 >gi|269792739|ref|YP_003317643.1| tRNA (adenine-N(1)-)-methyltransferase [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100374|gb|ACZ19361.1| tRNA (adenine-N(1)-)-methyltransferase [Thermanaerovibrio acidaminovorans DSM 6589] Length = 281 Score = 36.3 bits (83), Expect = 6.7, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 32/89 (35%), Gaps = 8/89 (8%) Query: 28 VIALLNPAPGKVILDATFGAGGYS---RSFCKMGSNVIALDRDPFAVSCGQETMRDYK-- 82 V+ LN PG +++ G+GG + F +V DR + Sbjct: 87 VLMHLNIGPGSRVVECGTGSGGLTCVFAHFVGDEGHVYTYDRRQEFSELAMRNAERWGVA 146 Query: 83 EQFSLFQATFSQLQDYVPDKGVDGVVFDL 111 ++ S L + ++ VD V DL Sbjct: 147 DRISF---KVRSLDEGFDERDVDAVFLDL 172 >gi|71902971|ref|YP_279774.1| SAM-dependent methyltransferase [Streptococcus pyogenes MGAS6180] gi|71802066|gb|AAX71419.1| SAM-dependent methyltransferase [Streptococcus pyogenes MGAS6180] Length = 193 Score = 36.3 bits (83), Expect = 6.7, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 2/72 (2%) Query: 43 ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQLQDYVPD 101 AT G G + ++ V A D A+ E + L A + YV + Sbjct: 35 ATMGNGNDTAFLAQLAKKVYAFDVQEQAIRKTSERLAQLGLSNAELILAGHEAVDQYVTE 94 Query: 102 KGVDGVVFDLGV 113 V +F+LG Sbjct: 95 P-VRAAIFNLGY 105 >gi|281413201|ref|YP_003347280.1| Methyltransferase type 12 [Thermotoga naphthophila RKU-10] gi|281374304|gb|ADA67866.1| Methyltransferase type 12 [Thermotoga naphthophila RKU-10] Length = 254 Score = 36.3 bits (83), Expect = 6.7, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 18/92 (19%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR-------- 79 ++ + GK +LD G G ++ K G V+ +D P ++ +E + Sbjct: 31 ILENFHIR-GKKVLDVACGEGTFAVEIAKQGFEVVGVDLSPEMLNFARERAKEESVPVIF 89 Query: 80 --------DYKEQFSLFQATFSQLQDYVPDKG 103 D+ E+F + F L +Y+ + Sbjct: 90 LKKDMRELDFHEEFDIVTCWFDSL-NYLLEYK 120 >gi|254486849|ref|ZP_05100054.1| AMP-dependent synthetase and ligase [Roseobacter sp. GAI101] gi|214043718|gb|EEB84356.1| AMP-dependent synthetase and ligase [Roseobacter sp. GAI101] Length = 508 Score = 36.3 bits (83), Expect = 6.7, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 35/101 (34%), Gaps = 2/101 (1%) Query: 87 LFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASD 146 + FS + + D L VSS D RG S ++ LD M+ + +A Sbjct: 92 IVPLPFSATPEALALMMADSNAELLFVSSAHADT-GRGLSVKQIVDLDRLMAWAADAAPA 150 Query: 147 VVNQANVKDLTRILGILGEEKQASRIAH-AIVKRRQSAPFQ 186 Q N DL I+ G I H + RQ Sbjct: 151 GPAQVNPDDLFNIIYSSGTTGTPKGIIHDHRFRSRQLNRIT 191 >gi|261419206|ref|YP_003252888.1| short-chain dehydrogenase/reductase SDR [Geobacillus sp. Y412MC61] gi|319766022|ref|YP_004131523.1| short-chain dehydrogenase/reductase SDR [Geobacillus sp. Y412MC52] gi|261375663|gb|ACX78406.1| short-chain dehydrogenase/reductase SDR [Geobacillus sp. Y412MC61] gi|317110888|gb|ADU93380.1| short-chain dehydrogenase/reductase SDR [Geobacillus sp. Y412MC52] Length = 249 Score = 36.3 bits (83), Expect = 7.0, Method: Composition-based stats. Identities = 34/186 (18%), Positives = 59/186 (31%), Gaps = 40/186 (21%) Query: 51 SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFD 110 +R+F K G+NV+ +DRD + G + Sbjct: 22 ARAFAKQGANVVIIDRDIQ---------------------NGEAFAAQLQSDGFKAIFVA 60 Query: 111 LGVSSMQIDCGDRGFSFQKS-----GPLDMRMSCSGISASDVVNQANVKDLTRILGILGE 165 V ++D +R F + G +D ++ +G+S + V++ +L Sbjct: 61 ADV--RKVDDIER---FVQEAAGRFGRIDYLINNAGVSRWKSPYELTVEEWDDVLSTNLR 115 Query: 166 EKQASRIAHAIVKRRQSA-----PFQTTQDLSSLIQKTVYFSKNNR----IHPATRSFQA 216 + A RR + +T+ L S Y + H SF Sbjct: 116 SAFFASREAAKYMRRNAKGGAIVNIASTRALMSEPNSEAYAASKGGLVALTHALAVSFAD 175 Query: 217 LRIFVN 222 RI VN Sbjct: 176 DRIRVN 181 >gi|332358268|gb|EGJ36096.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis SK355] Length = 463 Score = 36.3 bits (83), Expect = 7.1, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 37/90 (41%), Gaps = 6/90 (6%) Query: 23 VLLEKVIALLNPAPGKVILDATFGAG--GYSRSFCKMGSNVIALDRDPFAVSCGQETMRD 80 VL + + L+ ++DA G G G +F K ++ +D P A+ + + Sbjct: 291 VLYGEAVKALDVTKEDHLIDAYCGGGTIG--FAFAKKVKSLRGMDIIPEAIEDAKRNAKR 348 Query: 81 YKEQFSLFQATFSQLQDYVPDKGVDGVVFD 110 +L++A ++ +P +G D Sbjct: 349 MGFDNTLYEA--GTAEEIIPRWYAEGYRAD 376 >gi|326495170|dbj|BAJ85681.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326496350|dbj|BAJ94637.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 283 Score = 36.3 bits (83), Expect = 7.1, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 3/77 (3%) Query: 47 AGGYSRSFCKMGSNVIALDRDPFA--VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV 104 AGG + + + G + A RD + + + + E++ +++A +L GV Sbjct: 25 AGGGTYALLQCGEDS-AYVRDAYGGYFEVFRALLAEDGERWRVYRAVRGELPSDEDAAGV 83 Query: 105 DGVVFDLGVSSMQIDCG 121 DG V S D Sbjct: 84 DGFVISGSCSDAHGDEP 100 >gi|271963718|ref|YP_003337914.1| hypothetical protein Sros_2188 [Streptosporangium roseum DSM 43021] gi|270506893|gb|ACZ85171.1| hypothetical protein Sros_2188 [Streptosporangium roseum DSM 43021] Length = 411 Score = 36.3 bits (83), Expect = 7.1, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 9/72 (12%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRD-PFAVSCGQETMRD 80 L ++A P PG+ +LD GG++R + C+ + A D P A+ G+ + Sbjct: 158 LAPLVAATAPDPGRRLLDV---GGGHARYSIALCEAHPELTATIVDLPKALEGGRARVEQ 214 Query: 81 YK--EQFSLFQA 90 + Sbjct: 215 AGLAGRVRTVAG 226 >gi|260887305|ref|ZP_05898568.1| putative protein-L-IsoD(D-D) O-methyltransferase [Selenomonas sputigena ATCC 35185] gi|330838941|ref|YP_004413521.1| protein of unknown function DUF548 [Selenomonas sputigena ATCC 35185] gi|260862941|gb|EEX77441.1| putative protein-L-IsoD(D-D) O-methyltransferase [Selenomonas sputigena ATCC 35185] gi|329746705|gb|AEC00062.1| protein of unknown function DUF548 [Selenomonas sputigena ATCC 35185] Length = 263 Score = 36.3 bits (83), Expect = 7.1, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 33/98 (33%), Gaps = 13/98 (13%) Query: 26 EKVIALLNPAPGKVILDATFGAGGYS---RSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82 + ++ + G +LD T G G S V AL++ P + + + Sbjct: 91 DHMVEAMGIGEGDTVLDCTLGLGADSITASFIAGERGKVTALEKSPLIYEIVRHGLAHFS 150 Query: 83 E----------QFSLFQATFSQLQDYVPDKGVDGVVFD 110 + + +A + +PD D V FD Sbjct: 151 AGNYDLHAAMRRVEVRRADYEDFLRTLPDDSYDVVYFD 188 >gi|157961009|ref|YP_001501043.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella pealeana ATCC 700345] gi|226725390|sp|A8H1S1|RUMA_SHEPA RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|157846009|gb|ABV86508.1| RNA methyltransferase, TrmA family [Shewanella pealeana ATCC 700345] Length = 445 Score = 36.3 bits (83), Expect = 7.2, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 40/94 (42%), Gaps = 5/94 (5%) Query: 22 PV---LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETM 78 PV ++ + + L+P G+ +LD G G +S K G+ VI ++ V + Sbjct: 282 PVNQAMVSQAVEWLSPKAGERVLDLFCGIGNFSLPLAKDGAEVIGVEGVVAMVEQARVNA 341 Query: 79 RDYK-EQFSLFQATFS-QLQDYVPDKGVDGVVFD 110 + ++ + + A S L VD ++ D Sbjct: 342 KQSGLDKVAFYHADLSADLSKEPWLGKVDKMLID 375 >gi|297561816|ref|YP_003680790.1| RNA methyltransferase, TrmA family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296846264|gb|ADH68284.1| RNA methyltransferase, TrmA family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 428 Score = 36.3 bits (83), Expect = 7.2, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 4/91 (4%) Query: 23 VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMR 79 VL V+ L P PG+ LD GAG ++ + + ++ AV + ++ Sbjct: 260 VLTAAVLDALEPKPGETALDLYCGAGLFTGALAAAVGPEGRAMGVESGAEAVRDARYNLK 319 Query: 80 DYKEQFSLFQATFSQLQDYVPDKGVDGVVFD 110 D EQ + Q + D D VV D Sbjct: 320 DM-EQVRVEQGDVAAQLREWADVRADVVVLD 349 >gi|167771334|ref|ZP_02443387.1| hypothetical protein ANACOL_02700 [Anaerotruncus colihominis DSM 17241] gi|167665974|gb|EDS10104.1| hypothetical protein ANACOL_02700 [Anaerotruncus colihominis DSM 17241] Length = 406 Score = 36.3 bits (83), Expect = 7.3, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 38/131 (29%), Gaps = 27/131 (20%) Query: 62 IALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQDYVPDKGVDGVVFD--------- 110 A D DP AV +E + + QA + +P+ G G+V Sbjct: 278 FASDIDPEAVRLTRENAAKAGVAGRIHVVQADVADFAPQLPE-GRSGIVLANPPYGERML 336 Query: 111 -----------LGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRI 159 LG S + D GFS+ P D G A+ N ++ Sbjct: 337 GEQEAQALSRTLGASFPKRD----GFSYYIISPDDGFEDLFGRPAARRRKLYNGMIKCQV 392 Query: 160 LGILGEEKQAS 170 + Sbjct: 393 YMYFDKPVHFK 403 >gi|225562401|gb|EEH10680.1| S-adenosylmethionine (SAM)-dependent methyltransferase [Ajellomyces capsulatus G186AR] Length = 278 Score = 36.3 bits (83), Expect = 7.4, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 42/99 (42%) Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPF 69 S+ + VP L KV+ LNP P +LD G G ++ SF +V+ +D P Sbjct: 15 SAEAYQESAAFVPKLAHKVLQYLNPQPTDRVLDVGCGDGKFTSSFIPHIKSVLGVDASPS 74 Query: 70 AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVV 108 +S ++ K F + + + + + D VV Sbjct: 75 MISSAKQHYGIPKADFRVVDCRYLDREQDILNGAWDKVV 113 >gi|15887638|ref|NP_353319.1| Sun protein [Agrobacterium tumefaciens str. C58] gi|15155185|gb|AAK86104.1| Sun protein [Agrobacterium tumefaciens str. C58] Length = 429 Score = 36.3 bits (83), Expect = 7.4, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 5/79 (6%) Query: 35 APGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91 G+ +LD G GG + + V A D D ++ E ++ + Sbjct: 230 REGEQVLDYCAGGGGKTLAMAASMNNKGQVHAFDADRKRLAPIIERLKRAGTRNVQVHDR 289 Query: 92 FSQLQDYVPDKGVDGVVFD 110 + L + + D V+ D Sbjct: 290 AAGLAPF--QEKFDRVLVD 306 >gi|99081832|ref|YP_613986.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Ruegeria sp. TM1040] gi|99038112|gb|ABF64724.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Ruegeria sp. TM1040] Length = 217 Score = 36.3 bits (83), Expect = 7.4, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 41/106 (38%), Gaps = 9/106 (8%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84 L K++ L+ +++LD G G + ++ VI ++ D S QE + Sbjct: 67 LAKMLDALDVRQDELVLDVACGFGYSTAVVARLAQMVIGVEEDESLASEAQEILSASNAD 126 Query: 85 FSLFQATFSQLQDYVPDKG-VDGVVFDLGV------SSMQIDCGDR 123 ++ L + + G D ++ + GV Q+ G R Sbjct: 127 NAIVHQ--GDLAEGAAEHGPYDVIMIEGGVEEVPEALLAQLKDGGR 170 >gi|238501564|ref|XP_002382016.1| RNA methylase family protein, putative [Aspergillus flavus NRRL3357] gi|220692253|gb|EED48600.1| RNA methylase family protein, putative [Aspergillus flavus NRRL3357] Length = 252 Score = 36.3 bits (83), Expect = 7.4, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 51/118 (43%), Gaps = 20/118 (16%) Query: 11 SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDP 68 + + I +H+ A PA V++DA GAGG + +F + G V A++++P Sbjct: 70 EPVANKIAEHI--------ASAAPASRMVLVDAFAGAGGNTIAFARSGRWKRVYAIEKNP 121 Query: 69 FAVSCGQETMRDYK--EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRG 124 + C + + Y ++ + F+ Q+ V+ + DLG S+ G Sbjct: 122 AVLQCAKHNAKIYGVEDKITWFEGDSLQI--------VNNQLKDLGPYSVLFASPPWG 171 >gi|169769126|ref|XP_001819033.1| RNA methylase family protein [Aspergillus oryzae RIB40] gi|83766891|dbj|BAE57031.1| unnamed protein product [Aspergillus oryzae] Length = 240 Score = 36.3 bits (83), Expect = 7.4, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 51/118 (43%), Gaps = 20/118 (16%) Query: 11 SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDP 68 + + I +H+ A PA V++DA GAGG + +F + G V A++++P Sbjct: 58 EPVANKIAEHI--------ASAAPASRMVLVDAFAGAGGNTIAFARSGRWKRVYAIEKNP 109 Query: 69 FAVSCGQETMRDYK--EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRG 124 + C + + Y ++ + F+ Q+ V+ + DLG S+ G Sbjct: 110 AVLQCAKHNAKIYGVEDKITWFEGDSLQI--------VNNQLKDLGPYSVLFASPPWG 159 >gi|161524353|ref|YP_001579365.1| type 11 methyltransferase [Burkholderia multivorans ATCC 17616] gi|189350893|ref|YP_001946521.1| SAM-dependent methyltransferase [Burkholderia multivorans ATCC 17616] gi|160341782|gb|ABX14868.1| Methyltransferase type 11 [Burkholderia multivorans ATCC 17616] gi|189334915|dbj|BAG43985.1| SAM-dependent methyltransferase [Burkholderia multivorans ATCC 17616] Length = 200 Score = 36.3 bits (83), Expect = 7.6, Method: Composition-based stats. Identities = 15/40 (37%), Positives = 21/40 (52%) Query: 34 PAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSC 73 +LD G G ++R F G V+ALDRDP A++ Sbjct: 29 VRAHGAVLDVAAGGGRHARWFASRGHPVVALDRDPAALAA 68 >gi|118593792|ref|ZP_01551159.1| Methyltransferase type 11 [Stappia aggregata IAM 12614] gi|118433637|gb|EAV40301.1| Methyltransferase type 11 [Stappia aggregata IAM 12614] Length = 255 Score = 36.3 bits (83), Expect = 7.6, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 4/87 (4%) Query: 28 VIALLNPAPGKVILD-ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFS 86 + L P PG+ ILD T G G +R G++V +D P + + + Sbjct: 23 TVQALWPRPGERILDIGT-GTGWAARLAAWRGASVTGVDISPRMLEAAEALSAGLDPRPV 81 Query: 87 LFQATFSQLQDYVPDKGVDGVVFDLGV 113 QA L D+ DGV+ GV Sbjct: 82 FQQAAAEALP--FGDESFDGVISTYGV 106 >gi|227824162|ref|YP_002828135.1| Fmu (Sun) domain protein [Sinorhizobium fredii NGR234] gi|227343164|gb|ACP27382.1| Fmu (Sun) domain protein [Sinorhizobium fredii NGR234] Length = 429 Score = 36.3 bits (83), Expect = 7.7, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 30/86 (34%), Gaps = 5/86 (5%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84 V L+ P G+ +LD G GG + + V A D D ++ E ++ + Sbjct: 223 VADLVFPREGEQVLDYCAGGGGKTLAMSAAMNNKGQVHAYDTDRKRLAPIIERLKRAGTR 282 Query: 85 FSLFQATFSQLQDYVPDKGVDGVVFD 110 + L D V+ D Sbjct: 283 NVQVHESAEALASLAGRC--DRVLVD 306 >gi|332976547|gb|EGK13388.1| type 12 methyltransferase [Desmospora sp. 8437] Length = 249 Score = 35.9 bits (82), Expect = 7.9, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 4/59 (6%) Query: 45 FGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD 101 G G S VIALD P + + + + ++ F L ++ PD Sbjct: 54 VGGGWLSEVILDHFPRAEVIALDGSPSMIEATRGRLARFSDRLRF--QRFDLLDEHWPD 110 >gi|289644701|ref|ZP_06476762.1| Methyltransferase type 11 [Frankia symbiont of Datisca glomerata] gi|289505490|gb|EFD26528.1| Methyltransferase type 11 [Frankia symbiont of Datisca glomerata] Length = 250 Score = 35.9 bits (82), Expect = 7.9, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 35/95 (36%), Gaps = 6/95 (6%) Query: 27 KVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQ 84 + ++ L A G+ +LD G G + + + VIA+D + Q + ++ Sbjct: 23 RTLSRLALAGGETVLDVGCGTGRDTAALLDRLPHGRVIAVDGSAAMLDQLQARLAGRTDR 82 Query: 85 FSLFQATFSQLQDYVPDKGVDG-VVFDLGVSSMQI 118 + + L + G G V V++ Sbjct: 83 LEIVH---ADLTRPLRLPGPAGLVDAVFSVAAFHW 114 >gi|281357060|ref|ZP_06243550.1| translation initiation factor IF-3 [Victivallis vadensis ATCC BAA-548] gi|281316618|gb|EFB00642.1| translation initiation factor IF-3 [Victivallis vadensis ATCC BAA-548] Length = 167 Score = 35.9 bits (82), Expect = 7.9, Method: Composition-based stats. Identities = 20/115 (17%), Positives = 41/115 (35%), Gaps = 2/115 (1%) Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILG--EEKQASRIAHAIVKRRQSAPFQTTQDLS 192 M+ + +A +V + ++ E Q + +V R + P + Sbjct: 1 MKPNDRTFTAPEVRLIGPEGEQLDVVSYARAREMAQDYGMDLVLVSDRATPPVVRIMNFG 60 Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 L + K R + A + + ++ VN + + L+ A L+ G L V Sbjct: 61 KLQYEQKKNLKAQRKNQAAQKLKEVKFHVNIDDHDYETKLKHALDFLEKGCRLKV 115 >gi|253575649|ref|ZP_04852985.1| SAM binding domain-containing protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251844987|gb|EES72999.1| SAM binding domain-containing protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 254 Score = 35.9 bits (82), Expect = 7.9, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 2/72 (2%) Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84 ++++I L+ PG +LD G G +S + + G V +D + + + Sbjct: 39 VQRMIRWLHLPPGAKVLDLCCGMGRHSLALAEAGYKVTGVDL-SEVLLREARRLDPEG-R 96 Query: 85 FSLFQATFSQLQ 96 + +A +L Sbjct: 97 ITWHRADMRELP 108 >gi|124023403|ref|YP_001017710.1| glycine-sarcosine methyltransferase [Prochlorococcus marinus str. MIT 9303] gi|123963689|gb|ABM78445.1| probable glycine-sarcosine methyltransferase [Prochlorococcus marinus str. MIT 9303] Length = 283 Score = 35.9 bits (82), Expect = 7.9, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 3/85 (3%) Query: 40 ILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYV 99 +LD G G +S S K G +VI+ D P ++ + RD+ + QA + L + Sbjct: 72 VLDVATGTGFHSVSLLKEGFDVISADGSPNMLARAFQNARDHGQLLRTAQADWRYLNRDI 131 Query: 100 PDKGVDGVVFDLGVS-SMQIDCGDR 123 + D V+ LG S + DR Sbjct: 132 HGE-FDAVIC-LGNSFTHLFREHDR 154 >gi|90407141|ref|ZP_01215329.1| ribosomal protein L11 methyltransferase [Psychromonas sp. CNPT3] gi|90311717|gb|EAS39814.1| ribosomal protein L11 methyltransferase [Psychromonas sp. CNPT3] Length = 230 Score = 35.9 bits (82), Expect = 7.9, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 15/91 (16%) Query: 28 VIALLNPAP--GKVILDATFGAGGYSRSF--CKMGS-NVIALDRDPFAVSCGQETMRDYK 82 + L KVI+D FG G + K+G+ VI +D DP A++ ++ Sbjct: 83 CLTWLEGQDLRDKVIID--FGCGSGILAIAALKLGAKRVIGIDIDPQAITASRDNATR-- 138 Query: 83 EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 QL+ Y+ D +G+ D+ V Sbjct: 139 ------NGVSDQLELYLADDLPNGIQADVLV 163 >gi|332799053|ref|YP_004460552.1| 50S ribosomal protein L11 methyltransferase [Tepidanaerobacter sp. Re1] gi|332696788|gb|AEE91245.1| Ribosomal protein L11 methyltransferase [Tepidanaerobacter sp. Re1] Length = 314 Score = 35.9 bits (82), Expect = 8.0, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 44/100 (44%), Gaps = 7/100 (7%) Query: 17 IGDHVPVLLEKVIALLN--PAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSC 73 G H +L + +L ++D G+G S + K+G+ V+A+DRD AV Sbjct: 154 TGTHETTML--CLEILEKYIKKDITVIDVGCGSGILSIASGKLGAKQVLAIDRDENAVRI 211 Query: 74 GQETMR--DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDL 111 +E ++ + + + Q ++ D V ++ D+ Sbjct: 212 ARENIKRNNLETCVRAVKGDKLQNINFKADIIVANIIADV 251 >gi|295133869|ref|YP_003584545.1| ribosomal RNA small subunit methyltransferase B [Zunongwangia profunda SM-A87] gi|294981884|gb|ADF52349.1| ribosomal RNA small subunit methyltransferase B [Zunongwangia profunda SM-A87] Length = 411 Score = 35.9 bits (82), Expect = 8.0, Method: Composition-based stats. Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 3/41 (7%) Query: 28 VIALLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALD 65 V L+ PG ++D GAGG + + + VIALD Sbjct: 216 VADFLDVKPGDRVVDTCAGAGGKSLHLAALMENKGQVIALD 256 >gi|161520820|ref|YP_001584247.1| methyltransferase type 11 [Burkholderia multivorans ATCC 17616] gi|189352998|ref|YP_001948625.1| methylase [Burkholderia multivorans ATCC 17616] gi|160344870|gb|ABX17955.1| Methyltransferase type 11 [Burkholderia multivorans ATCC 17616] gi|189337020|dbj|BAG46089.1| methylase [Burkholderia multivorans ATCC 17616] Length = 243 Score = 35.9 bits (82), Expect = 8.0, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 2/81 (2%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSL 87 +ALL G +LDA G G S + G+ V A D P V+ + + Sbjct: 38 TLALLGDVAGLTVLDAGCGPGICSELLARRGATVHAFDVTPEMVALARARCAGLA--VDI 95 Query: 88 FQATFSQLQDYVPDKGVDGVV 108 Q + D++PD D V+ Sbjct: 96 AQGDLAAPLDWLPDASFDKVL 116 >gi|118346215|ref|XP_977054.1| hypothetical protein TTHERM_00035540 [Tetrahymena thermophila] gi|89288353|gb|EAR86341.1| hypothetical protein TTHERM_00035540 [Tetrahymena thermophila SB210] Length = 1006 Score = 35.9 bits (82), Expect = 8.0, Method: Composition-based stats. Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 6/103 (5%) Query: 26 EKVIALLNPA-PGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84 E + L+ ++++DA G G + F K S VIA+D + VS + + +K+Q Sbjct: 367 EPICQYLSSRLKNQIVVDAFCGVGYNTVQFAKEASQVIAIDCNQVKVSHAKYNIESFKQQ 426 Query: 85 --FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGD 122 + Q+ F Q++ D V D FD +SS Q Sbjct: 427 HKVEVIQSDFLQMKKLKADTVVLHPDYKKFDNSISSSQGIDNS 469 >gi|254247810|ref|ZP_04941131.1| conserved hypothetical protein [Burkholderia cenocepacia PC184] gi|124872586|gb|EAY64302.1| conserved hypothetical protein [Burkholderia cenocepacia PC184] Length = 200 Score = 35.9 bits (82), Expect = 8.1, Method: Composition-based stats. Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%) Query: 32 LNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSC 73 L PA G +LD G G ++ F G V+ALDRDP A++ Sbjct: 28 LVPA-GGAVLDVAAGGGRHAGWFASRGHPVVALDRDPAALAA 68 >gi|107028724|ref|YP_625819.1| methyltransferase type 12 [Burkholderia cenocepacia AU 1054] gi|116690117|ref|YP_835740.1| methyltransferase type 12 [Burkholderia cenocepacia HI2424] gi|105897888|gb|ABF80846.1| Methyltransferase type 12 [Burkholderia cenocepacia AU 1054] gi|116648206|gb|ABK08847.1| Methyltransferase type 12 [Burkholderia cenocepacia HI2424] Length = 200 Score = 35.9 bits (82), Expect = 8.2, Method: Composition-based stats. Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%) Query: 32 LNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSC 73 L PA G +LD G G ++ F G V+ALDRDP A++ Sbjct: 28 LVPA-GGAVLDVAAGGGRHAGWFASRGHPVVALDRDPAALAA 68 >gi|332158532|ref|YP_004423811.1| hypothetical protein PNA2_0891 [Pyrococcus sp. NA2] gi|331033995|gb|AEC51807.1| hypothetical protein PNA2_0891 [Pyrococcus sp. NA2] Length = 396 Score = 35.9 bits (82), Expect = 8.3, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 34/84 (40%), Gaps = 9/84 (10%) Query: 34 PAPGKVILDA---TFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET--MRDYKEQFSLF 88 PG +LD T G ++ + VI +D+ P A+ +E + +++ + Sbjct: 215 VRPGDRVLDVFTYTGGFAIHA-AIAGA-EEVIGIDKSPKAIETAKENAKLNGVEDRVNFM 272 Query: 89 QATFSQLQDYVPDKG--VDGVVFD 110 + + + +G D V+ D Sbjct: 273 VGNAFEEMEKLQKRGEKFDIVILD 296 >gi|83748247|ref|ZP_00945273.1| Hypothetical Protein RRSL_01934 [Ralstonia solanacearum UW551] gi|207722880|ref|YP_002253314.1| conserved hypothetical protein [Ralstonia solanacearum MolK2] gi|207743515|ref|YP_002259907.1| hypothetical protein RSIPO_01694 [Ralstonia solanacearum IPO1609] gi|83725088|gb|EAP72240.1| Hypothetical Protein RRSL_01934 [Ralstonia solanacearum UW551] gi|206588064|emb|CAQ18644.1| conserved hypothetical protein [Ralstonia solanacearum MolK2] gi|206594913|emb|CAQ61840.1| conserved hypothetical protein [Ralstonia solanacearum IPO1609] Length = 188 Score = 35.9 bits (82), Expect = 8.3, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%) Query: 28 VIALLNPAPGK-VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVS 72 V+ P P +LD G G ++R G V LDRD A++ Sbjct: 18 VVRWAAPLPAGARVLDIACGRGRHARWLAARGLRVTGLDRDADALA 63 >gi|296130427|ref|YP_003637677.1| hypothetical protein Cfla_2590 [Cellulomonas flavigena DSM 20109] gi|296022242|gb|ADG75478.1| conserved hypothetical protein [Cellulomonas flavigena DSM 20109] Length = 400 Score = 35.9 bits (82), Expect = 8.3, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 3/69 (4%) Query: 42 DATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD 101 D T G G + + +G V+A D D + +R + E + L + Sbjct: 103 DLTCGLGADALAMAGVGLRVLATDVDETTAALATVNLRAFPE-VEVRMGDGLALD--LAG 159 Query: 102 KGVDGVVFD 110 +GVDGV D Sbjct: 160 EGVDGVYAD 168 >gi|145590568|ref|YP_001152570.1| methyltransferase type 11 [Pyrobaculum arsenaticum DSM 13514] gi|145282336|gb|ABP49918.1| Methyltransferase type 11 [Pyrobaculum arsenaticum DSM 13514] Length = 165 Score = 35.9 bits (82), Expect = 8.3, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 7/78 (8%) Query: 24 LLEKVIALLNPAP-GKVILDATFGAG-GYS-RSFCKMGSNVIALDRDPFAVSCGQETMRD 80 +L++V A L+ G+ ++D GAG GYS R G V A+D DP +S + Sbjct: 1 MLDEVFADLDSLDLGQSVVD--IGAGFGYSTRYLLSRGLRVCAVDVDPGVLSSLGAAFGE 58 Query: 81 YKEQ--FSLFQATFSQLQ 96 + + L+ A L Sbjct: 59 FVKVGLLKLYHAPAEHLP 76 >gi|169848697|ref|XP_001831053.1| Tgs1 protein [Coprinopsis cinerea okayama7#130] gi|116507780|gb|EAU90675.1| Tgs1 protein [Coprinopsis cinerea okayama7#130] Length = 309 Score = 35.9 bits (82), Expect = 8.3, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 2/64 (3%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96 ILDA G GG + +F + + VIALD P ++ + Y ++ A + Sbjct: 118 TILDAFCGVGGNAIAFAQTCNRVIALDTSPVRLALARHNAEIYGVADRIEFILADYISFA 177 Query: 97 DYVP 100 + + Sbjct: 178 NTLA 181 >gi|194764547|ref|XP_001964390.1| GF23076 [Drosophila ananassae] gi|190614662|gb|EDV30186.1| GF23076 [Drosophila ananassae] Length = 218 Score = 35.9 bits (82), Expect = 8.5, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 2/60 (3%) Query: 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96 +I+DA G GG + F VIA+D D +S + Y + A F Q Sbjct: 58 LIVDAFCGCGGNAIQFANTCGRVIAIDIDAEKLSMAKHNACIYGVSHKIEFIHADFLQFA 117 >gi|332185231|ref|ZP_08386980.1| dimethyladenosine transferase [Sphingomonas sp. S17] gi|332014955|gb|EGI57011.1| dimethyladenosine transferase [Sphingomonas sp. S17] Length = 274 Score = 35.9 bits (82), Expect = 8.6, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 19/45 (42%) Query: 46 GAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQA 90 G GG +R+ G V A++RD + E + + + + Sbjct: 57 GPGGLTRALLMAGGRVTAIERDRRCIPALAELSEAFPGRLRVIEG 101 >gi|154246746|ref|YP_001417704.1| short-chain dehydrogenase/reductase SDR [Xanthobacter autotrophicus Py2] gi|154160831|gb|ABS68047.1| short-chain dehydrogenase/reductase SDR [Xanthobacter autotrophicus Py2] Length = 253 Score = 35.9 bits (82), Expect = 8.6, Method: Composition-based stats. Identities = 9/36 (25%), Positives = 16/36 (44%) Query: 52 RSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSL 87 + G V+A DRD AV + + + E+ + Sbjct: 22 EALLAEGWRVVAADRDVQAVEKARAQLAGHGERVRV 57 >gi|53803775|ref|YP_114333.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Methylococcus capsulatus str. Bath] gi|90126220|sp|Q606W5|RUMA_METCA RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|53757536|gb|AAU91827.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Methylococcus capsulatus str. Bath] Length = 443 Score = 35.9 bits (82), Expect = 8.6, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 27/59 (45%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82 ++++V+ L+P P + +LD G G ++ + +V ++ AV+ D Sbjct: 285 MIDQVMQALDPQPEERVLDLFCGLGNFTLPLARRAGHVTGVEGGAEAVARAIRNAADNG 343 >gi|320159374|ref|YP_004191752.1| tRNA and rRNA cytosine-C5-methylase [Vibrio vulnificus MO6-24/O] gi|319934686|gb|ADV89549.1| tRNA and rRNA cytosine-C5-methylase [Vibrio vulnificus MO6-24/O] Length = 404 Score = 35.9 bits (82), Expect = 9.0, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 3/58 (5%) Query: 28 VIALLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82 V A L+ PG ++DA GAGG + + ++A+D + + ++ +E R Sbjct: 217 VAAALDVKPGMRVIDACAGAGGKTLHLAAMMAGKGRLLAMDVEEWKLNNLKERARRAG 274 >gi|307944937|ref|ZP_07660274.1| methyltransferase type 11 [Roseibium sp. TrichSKD4] gi|307771861|gb|EFO31085.1| methyltransferase type 11 [Roseibium sp. TrichSKD4] Length = 336 Score = 35.9 bits (82), Expect = 9.0, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 43/104 (41%), Gaps = 28/104 (26%) Query: 225 IEELAQGLRSAEKALKAGGLLIVVSF--HSLE---------------DRLVKKFFASRSG 267 +++ + L A +AL+ GG L+V+ F H+LE D + +++ + Sbjct: 234 LDDPQRALSEAARALRPGGRLLVIDFAPHTLEFLRDAHAHRRLGIARDHM-ERWLETLDL 292 Query: 268 KVMAVRHMIPSNAHPAVF----------QSITKKVVVPTQEDVA 301 + AV + P + +T V P++++VA Sbjct: 293 DLEAVSDLEPQTDSGTQLTVTLWLARDRRIVTDLPVTPSRQEVA 336 >gi|241765841|ref|ZP_04763778.1| SurA domain protein [Acidovorax delafieldii 2AN] gi|241364240|gb|EER59412.1| SurA domain protein [Acidovorax delafieldii 2AN] Length = 466 Score = 35.9 bits (82), Expect = 9.1, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 9/74 (12%) Query: 50 YSRSFC-KMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVV 108 ++R + G + S + DY+ + QA F++L G Sbjct: 323 HARHILLRTGPQLT--------ESAAAARLADYRRRVLAGQADFAELAREHSQDGSAKQG 374 Query: 109 FDLGVSSMQIDCGD 122 DLG S+ + Sbjct: 375 GDLGWSNPGRYVPE 388 >gi|224539112|ref|ZP_03679651.1| hypothetical protein BACCELL_04014 [Bacteroides cellulosilyticus DSM 14838] gi|224519276|gb|EEF88381.1| hypothetical protein BACCELL_04014 [Bacteroides cellulosilyticus DSM 14838] Length = 243 Score = 35.9 bits (82), Expect = 9.1, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 4/89 (4%) Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83 LLE+ L A GK+ LD G+G +S + + G +V A+D P +V Q+ + Sbjct: 55 LLERT--ALQLATGKI-LDVGAGSGCHSLALQEAGKDVHAIDISPLSVEVMQQRGVRHAT 111 Query: 84 QFSLFQATFSQ-LQDYVPDKGVDGVVFDL 111 +LF F + + G++ L Sbjct: 112 LLNLFDEHFQETYDTILMLMNGSGIIGKL 140 >gi|254467076|ref|ZP_05080487.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Rhodobacterales bacterium Y4I] gi|206687984|gb|EDZ48466.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Rhodobacterales bacterium Y4I] Length = 217 Score = 35.9 bits (82), Expect = 9.1, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 42/115 (36%), Gaps = 18/115 (15%) Query: 23 VLLEK-----VIALLNPAPGKVILDATFGAG-GYSRSFCKMGSN-VIALDRDPFAVSCGQ 75 VLLE ++ L+ +++LD G G GYS + + VI ++ D Q Sbjct: 60 VLLEPRTLAKMLDALDIQNDELVLD--VGCGLGYSTAVAARVAQMVIGVEEDEDLAEDAQ 117 Query: 76 ETMRDYKEQFSLFQATFSQLQDYVPDKG-VDGVVFDLG------VSSMQIDCGDR 123 + + ++ L + + G D ++ G Q+ G R Sbjct: 118 ALLSETGADNAIVHT--GPLAEGAAEHGPYDVILVQGGAEELPAPLLAQLKDGGR 170 >gi|189349594|ref|YP_001945222.1| hypothetical protein BMULJ_00723 [Burkholderia multivorans ATCC 17616] gi|189333616|dbj|BAG42686.1| hypothetical protein BMULJ_00723 [Burkholderia multivorans ATCC 17616] Length = 356 Score = 35.9 bits (82), Expect = 9.1, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 17/52 (32%), Gaps = 3/52 (5%) Query: 38 KVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSL 87 ++D G GYS + D D A+ E QF++ Sbjct: 28 GHVVDCACGI-GYSSEVLAAAGVQSYQGFDIDEQAIQHAIERFATDGRQFAV 78 >gi|298480499|ref|ZP_06998696.1| methyltransferase, FkbM family [Bacteroides sp. D22] gi|298273320|gb|EFI14884.1| methyltransferase, FkbM family [Bacteroides sp. D22] Length = 270 Score = 35.9 bits (82), Expect = 9.3, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 25/55 (45%), Gaps = 4/55 (7%) Query: 37 GKVILDATFGAG-GYSR-SFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQ 89 GKV +D G GYS + +V ++D + + T ++++ ++ Q Sbjct: 117 GKVFVD--VGCAEGYSSLEIIEEAKHVYLFEQDEQWLEAIRATFEPWQDKVTIVQ 169 >gi|293368891|ref|ZP_06615494.1| methyltransferase, FkbM family [Bacteroides ovatus SD CMC 3f] gi|292636040|gb|EFF54529.1| methyltransferase, FkbM family [Bacteroides ovatus SD CMC 3f] Length = 250 Score = 35.9 bits (82), Expect = 9.3, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 25/55 (45%), Gaps = 4/55 (7%) Query: 37 GKVILDATFGAG-GYSR-SFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQ 89 GKV +D G GYS + +V ++D + + T ++++ ++ Q Sbjct: 97 GKVFVD--VGCAEGYSSLEIIEEAKHVYLFEQDEQWLEAIRATFEPWQDKVTIVQ 149 >gi|237716729|ref|ZP_04547210.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262405505|ref|ZP_06082055.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294646355|ref|ZP_06724002.1| methyltransferase, FkbM family [Bacteroides ovatus SD CC 2a] gi|294806691|ref|ZP_06765522.1| methyltransferase, FkbM family [Bacteroides xylanisolvens SD CC 1b] gi|229442712|gb|EEO48503.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262356380|gb|EEZ05470.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292638310|gb|EFF56681.1| methyltransferase, FkbM family [Bacteroides ovatus SD CC 2a] gi|294446111|gb|EFG14747.1| methyltransferase, FkbM family [Bacteroides xylanisolvens SD CC 1b] Length = 270 Score = 35.9 bits (82), Expect = 9.3, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 25/55 (45%), Gaps = 4/55 (7%) Query: 37 GKVILDATFGAG-GYSR-SFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQ 89 GKV +D G GYS + +V ++D + + T ++++ ++ Q Sbjct: 117 GKVFVD--VGCAEGYSSLEIIEEAKHVYLFEQDEQWLEAIRATFEPWQDKVTIVQ 169 >gi|218666805|ref|YP_002424535.1| sun protein [Acidithiobacillus ferrooxidans ATCC 23270] gi|218519018|gb|ACK79604.1| sun protein [Acidithiobacillus ferrooxidans ATCC 23270] Length = 434 Score = 35.9 bits (82), Expect = 9.3, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 1/80 (1%) Query: 32 LNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSLFQA 90 L P G+ ILDA GG + +G+ + ALDR ++ +ET+ + L A Sbjct: 249 LAPREGERILDACAAPGGKTAHLWALGATRLDALDRSAERLNRVRETLERQGGEVHLQAA 308 Query: 91 TFSQLQDYVPDKGVDGVVFD 110 ++ + + D ++ D Sbjct: 309 DAAETATWWNGETYDAILLD 328 >gi|198282170|ref|YP_002218491.1| sun protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|198246691|gb|ACH82284.1| sun protein [Acidithiobacillus ferrooxidans ATCC 53993] Length = 431 Score = 35.9 bits (82), Expect = 9.3, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 1/80 (1%) Query: 32 LNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSLFQA 90 L P G+ ILDA GG + +G+ + ALDR ++ +ET+ + L A Sbjct: 246 LAPREGERILDACAAPGGKTAHLWALGATRLDALDRSAERLNRVRETLERQGGEVHLQAA 305 Query: 91 TFSQLQDYVPDKGVDGVVFD 110 ++ + + D ++ D Sbjct: 306 DAAETATWWNGETYDAILLD 325 >gi|160883972|ref|ZP_02064975.1| hypothetical protein BACOVA_01946 [Bacteroides ovatus ATCC 8483] gi|237720459|ref|ZP_04550940.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|260172497|ref|ZP_05758909.1| hypothetical protein BacD2_11591 [Bacteroides sp. D2] gi|299147049|ref|ZP_07040116.1| methyltransferase, FkbM family [Bacteroides sp. 3_1_23] gi|315920791|ref|ZP_07917031.1| conserved hypothetical protein [Bacteroides sp. D2] gi|156110702|gb|EDO12447.1| hypothetical protein BACOVA_01946 [Bacteroides ovatus ATCC 8483] gi|229450210|gb|EEO56001.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|298514934|gb|EFI38816.1| methyltransferase, FkbM family [Bacteroides sp. 3_1_23] gi|313694666|gb|EFS31501.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 270 Score = 35.9 bits (82), Expect = 9.3, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 25/55 (45%), Gaps = 4/55 (7%) Query: 37 GKVILDATFGAG-GYSR-SFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQ 89 GKV +D G GYS + +V ++D + + T ++++ ++ Q Sbjct: 117 GKVFVD--VGCAEGYSSLEIIEEAKHVYLFEQDEQWLEAIRATFEPWQDKVTIVQ 169 >gi|37677324|ref|NP_937720.1| tRNA and rRNA cytosine-C5-methylase [Vibrio vulnificus YJ016] gi|37201870|dbj|BAC97690.1| tRNA and rRNA cytosine-C5-methylase [Vibrio vulnificus YJ016] Length = 415 Score = 35.9 bits (82), Expect = 9.3, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 3/58 (5%) Query: 28 VIALLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82 V A L+ PG ++DA GAGG + + ++A+D + + ++ +E R Sbjct: 228 VAAALDVKPGMRVIDACAGAGGKTLHLAAMMAGKGRLLAMDVEEWKLNNLKERARRAG 285 >gi|33594975|ref|NP_882618.1| hypothetical protein BPP0259 [Bordetella parapertussis 12822] gi|33565051|emb|CAE40000.1| conserved hypothetical protein [Bordetella parapertussis] Length = 474 Score = 35.9 bits (82), Expect = 9.4, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 4/85 (4%) Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYK---EQFS 86 LL PA G +LDA GG + ++ +++ALD D + + + + Sbjct: 283 LLAPADGMRVLDACAAPGGKTAHLLELADIDLLALDADAQRLERVDQNLERLGLRTPRVR 342 Query: 87 LFQATFSQLQDYVPDKGVDGVVFDL 111 L A S L + + D V+ D+ Sbjct: 343 LAAADASDLDAWWDGRPFDAVLADV 367 >gi|33862825|ref|NP_894385.1| glycine-sarcosine methyltransferase [Prochlorococcus marinus str. MIT 9313] gi|33634741|emb|CAE20727.1| probable glycine-sarcosine methyltransferase [Prochlorococcus marinus str. MIT 9313] Length = 280 Score = 35.9 bits (82), Expect = 9.4, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 3/85 (3%) Query: 40 ILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYV 99 +LD G G +S S K G +VI+ D P ++ + RD+ + QA + L + Sbjct: 72 VLDVATGTGFHSVSLLKEGFDVISADGSPNMLARAFQNARDHGQLLRTAQADWRFLNRDI 131 Query: 100 PDKGVDGVVFDLGVS-SMQIDCGDR 123 + D V+ LG S + DR Sbjct: 132 HGE-FDAVIC-LGNSFTHLFREHDR 154 >gi|189194583|ref|XP_001933630.1| trimethylguanosine synthase [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187979194|gb|EDU45820.1| trimethylguanosine synthase [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 240 Score = 35.9 bits (82), Expect = 9.5, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 10/74 (13%) Query: 11 SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDP 68 I + I H+ + P VI+DA G GG + + + G V A+++DP Sbjct: 54 EPIANKIAAHIS----ES----APKEKTVIVDAFAGVGGNAIALARSGRWERVFAIEKDP 105 Query: 69 FAVSCGQETMRDYK 82 + C + Y Sbjct: 106 KTLMCAKHNAEIYG 119 >gi|120404406|ref|YP_954235.1| precorrin-6Y C5,15-methyltransferase subunit CbiT [Mycobacterium vanbaalenii PYR-1] gi|119957224|gb|ABM14229.1| precorrin-6Y C5,15-methyltransferase (decarboxylating) [Mycobacterium vanbaalenii PYR-1] Length = 395 Score = 35.9 bits (82), Expect = 9.5, Method: Composition-based stats. Identities = 27/141 (19%), Positives = 47/141 (33%), Gaps = 16/141 (11%) Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85 +A L P PG+++ D G+G S +C+ G IA +RD + E + Sbjct: 234 TLAALAPRPGELLWDVGAGSGSISIEWCRSGPGCRAIAFERDEARRARITENAVAHGAGV 293 Query: 86 SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISAS 145 + F + + V GVS + R+ G + Sbjct: 294 EV---RFDAPESFDSSPPPAAVFVGGGVSRPGMIDACW-----------ERLGPGGRLVA 339 Query: 146 DVVNQANVKDLTRILGILGEE 166 + V + L + +G E Sbjct: 340 NAVTVESEAVLAQWYSRVGGE 360 >gi|332184589|gb|AEE26843.1| Beta-hexosaminidase [Francisella cf. novicida 3523] Length = 378 Score = 35.9 bits (82), Expect = 9.6, Method: Composition-based stats. Identities = 17/103 (16%), Positives = 43/103 (41%), Gaps = 5/103 (4%) Query: 138 SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR--QSAPFQTTQDLSSLI 195 + S + A+D+ N K+L + +L E K + ++ R+ ++ P + + ++ Sbjct: 218 NDSHLGAADITNTWTEKELIPYIKLLPENKHCMVMTAHVMNRKIDETNPATLSSKIIKIL 277 Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 + + F + I +A+ + E+E L + + Sbjct: 278 RTDIKF--DGVIISDAMEMKAVTEYY-GELESLKLAINAGVNM 317 >gi|150400573|ref|YP_001324339.1| putative RNA methylase [Methanococcus aeolicus Nankai-3] gi|150013276|gb|ABR55727.1| putative RNA methylase [Methanococcus aeolicus Nankai-3] Length = 264 Score = 35.9 bits (82), Expect = 9.6, Method: Composition-based stats. Identities = 18/106 (16%), Positives = 34/106 (32%), Gaps = 20/106 (18%) Query: 20 HVPVLLE--------KVIALLNPAPGKVILDATFGAGGYSRSFC-----KMGSNVIALDR 66 H +LL+ + I P ++ D G G + V AL+ Sbjct: 11 HYSMLLDTDRVAVFKEAIEQ-TVKPNDIVYD--LGTG---SGILAMVASQKAKKVYALEL 64 Query: 67 DPFAVSCGQETMRDYK-EQFSLFQATFSQLQDYVPDKGVDGVVFDL 111 DP +E ++ E + +Y + D ++ +L Sbjct: 65 DPITCMYAKENLKINDYENIKNINLIEADASEYNFKEQADVIIAEL 110 >gi|206901460|ref|YP_002250835.1| putative L-glutaminyl-2-N-methyltransferase StsG [Dictyoglomus thermophilum H-6-12] gi|206740563|gb|ACI19621.1| putative L-glutaminyl-2-N-methyltransferase StsG [Dictyoglomus thermophilum H-6-12] Length = 252 Score = 35.9 bits (82), Expect = 9.7, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 2/54 (3%) Query: 32 LNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQF 85 L+ G +ILD G G ++ K G I +DR + +E K++ Sbjct: 40 LSIKRGHLILDLGCGFGRHTLELGKRGYRTIGIDRSEDLIEIAKE--EAKKDRV 91 >gi|167572849|ref|ZP_02365723.1| hypothetical protein BoklC_23638 [Burkholderia oklahomensis C6786] Length = 248 Score = 35.9 bits (82), Expect = 9.7, Method: Composition-based stats. Identities = 16/100 (16%), Positives = 30/100 (30%), Gaps = 6/100 (6%) Query: 26 EKVIALLNPAPGKVILDATFGAGGYS---RSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82 +++ P +LD G GG S V+A+D+ A+ + Sbjct: 7 RRLLESARLRPSMRVLDIGCGTGGVSMLAAEMVGPTGTVVAIDQSDIAIDAATANAE--R 64 Query: 83 EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGD 122 + + L D V+ V Q+ + Sbjct: 65 ARLHNIRFRACGLDQVEGVHSFDVVIARC-VLMHQLHVAE 103 >gi|254509818|ref|ZP_05121885.1| Fmu (Sun) [Rhodobacteraceae bacterium KLH11] gi|221533529|gb|EEE36517.1| Fmu (Sun) [Rhodobacteraceae bacterium KLH11] Length = 419 Score = 35.9 bits (82), Expect = 9.8, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 37/87 (42%), Gaps = 7/87 (8%) Query: 29 IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLF 88 + +L P PG+ +LD GG + G++V ALD ++ + ++ + ++ Sbjct: 221 VQVLAPKPGEKVLDLCAAPGGKTLQLAAAGADVTALDISEARLARVHDNLQRTGLKATVI 280 Query: 89 QATFSQLQDYVPDKG-VDGVVFDLGVS 114 A D + G D ++ D S Sbjct: 281 AA------DALDHHGQYDAILLDAPCS 301 >gi|161525683|ref|YP_001580695.1| type 11 methyltransferase [Burkholderia multivorans ATCC 17616] gi|160343112|gb|ABX16198.1| Methyltransferase type 11 [Burkholderia multivorans ATCC 17616] Length = 359 Score = 35.9 bits (82), Expect = 9.8, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 17/52 (32%), Gaps = 3/52 (5%) Query: 38 KVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSL 87 ++D G GYS + D D A+ E QF++ Sbjct: 31 GHVVDCACGI-GYSSEVLAAAGVQSYQGFDIDEQAIQHAIERFATDGRQFAV 81 >gi|116753346|ref|YP_842464.1| protein of unknown function Met10 [Methanosaeta thermophila PT] gi|116664797|gb|ABK13824.1| methyltransferase [Methanosaeta thermophila PT] Length = 328 Score = 35.9 bits (82), Expect = 9.9, Method: Composition-based stats. Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 1/79 (1%) Query: 33 NPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATF 92 PG +++D G G +S K G+ VIA+D++P A +E R + + + Sbjct: 163 QVRPGDLVVDMFAGVGPFSLLMAKRGARVIAIDKNPCAAKLLKENARMNRLDVEIREGDA 222 Query: 93 SQLQDYVPDKGVDGVVFDL 111 S L + + D D VV +L Sbjct: 223 SSLTEDLAD-KADHVVMNL 240 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.312 0.162 0.517 Lambda K H 0.267 0.0494 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 6,755,299,666 Number of Sequences: 14124377 Number of extensions: 307416734 Number of successful extensions: 844039 Number of sequences better than 10.0: 4041 Number of HSP's better than 10.0 without gapping: 5322 Number of HSP's successfully gapped in prelim test: 1348 Number of HSP's that attempted gapping in prelim test: 816148 Number of HSP's gapped (non-prelim): 7350 length of query: 341 length of database: 4,842,793,630 effective HSP length: 139 effective length of query: 202 effective length of database: 2,879,505,227 effective search space: 581660055854 effective search space used: 581660055854 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.1 bits) S2: 82 (35.9 bits)