BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|255764511|ref|YP_003065518.2| S-adenosyl-methyltransferase
MraW [Candidatus Liberibacter asiaticus str. psy62]
         (341 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|255764511|ref|YP_003065518.2| S-adenosyl-methyltransferase MraW [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254547862|gb|ACT57578.2| S-adenosyl-methyltransferase MraW [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 341

 Score =  701 bits (1808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/341 (100%), Positives = 341/341 (100%)

Query: 1   MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN 60
           MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN
Sbjct: 1   MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN 60

Query: 61  VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDC 120
           VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDC
Sbjct: 61  VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDC 120

Query: 121 GDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           GDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR
Sbjct: 121 GDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180

Query: 181 QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK
Sbjct: 181 QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300
           AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV
Sbjct: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300

Query: 301 AFNRRSRSAKLRAGMRTVERSIEDDSFVHLPRLPTLSQFRG 341
           AFNRRSRSAKLRAGMRTVERSIEDDSFVHLPRLPTLSQFRG
Sbjct: 301 AFNRRSRSAKLRAGMRTVERSIEDDSFVHLPRLPTLSQFRG 341


>gi|315122411|ref|YP_004062900.1| S-adenosyl-methyltransferase MraW [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495813|gb|ADR52412.1| S-adenosyl-methyltransferase MraW [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 348

 Score =  544 bits (1401), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 264/342 (77%), Positives = 298/342 (87%), Gaps = 1/342 (0%)

Query: 1   MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN 60
           M+S+  K  SS I  T   H+PVLLE+VIALL P+PGK+I+DATFGAGGYS SFC+MGS+
Sbjct: 1   MKSRYLKETSSPIDSTTNGHIPVLLEEVIALLKPSPGKIIVDATFGAGGYSHSFCQMGSS 60

Query: 61  VIALDRDPFAVSCGQETMRDY-KEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQID 119
           VIALDRDP AV+ GQE M+DY K++ SLF+ATFS+L+DYVPD GVDG+VFDLGVSSMQID
Sbjct: 61  VIALDRDPLAVAAGQEIMKDYIKKKISLFEATFSRLKDYVPDNGVDGIVFDLGVSSMQID 120

Query: 120 CGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
           CGDRGFSFQK GPLDMRMSCSG+SASDVVN A+VKDL RILGILGEEKQASRIAHAIVKR
Sbjct: 121 CGDRGFSFQKHGPLDMRMSCSGVSASDVVNHADVKDLIRILGILGEEKQASRIAHAIVKR 180

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
           R+  PFQTT+DLSSLIQ TVY   NNRIHPATRSFQALRIFVN+EI EL +GL SAEKAL
Sbjct: 181 RKHLPFQTTEDLSSLIQNTVYIRNNNRIHPATRSFQALRIFVNDEIRELEKGLLSAEKAL 240

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
           K GG+LIVVSFHSLEDRLVKKFFASRSGKV AVRHMIPS+ HPAVFQS+TKKVV+PTQ D
Sbjct: 241 KDGGVLIVVSFHSLEDRLVKKFFASRSGKVTAVRHMIPSHIHPAVFQSLTKKVVIPTQSD 300

Query: 300 VAFNRRSRSAKLRAGMRTVERSIEDDSFVHLPRLPTLSQFRG 341
           +A NRR+RSAKLR G+RT  + ++D SF +L  LP LSQFRG
Sbjct: 301 IAKNRRARSAKLRVGIRTSAQPMKDLSFEYLAHLPALSQFRG 342


>gi|159185048|ref|NP_355067.2| S-adenosyl-methyltransferase MraW [Agrobacterium tumefaciens str.
           C58]
 gi|20138929|sp|P58745|RSMH_AGRT5 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|159140322|gb|AAK87852.2| S-adenosyl methionine-dependent methytransferase [Agrobacterium
           tumefaciens str. C58]
          Length = 341

 Score =  365 bits (938), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 180/323 (55%), Positives = 232/323 (71%), Gaps = 1/323 (0%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+PVLL +VIA L PAPGK+ILD TFGAGGY+++    G+NVIALDRDP A++ G+  + 
Sbjct: 19  HIPVLLREVIAALEPAPGKIILDGTFGAGGYTQAILDQGANVIALDRDPTAIAGGEAMVV 78

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
               + SL Q+ FS L  + P+ G+DGVV D+GVSSMQID  +RGFSFQK+GPLDMRMS 
Sbjct: 79  ANGGRLSLIQSQFSDLAKHAPEDGLDGVVLDIGVSSMQIDEAERGFSFQKNGPLDMRMSA 138

Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199
           SG+SA+DVVN+A V DL RI G LGEEKQ  RIA AI K+R   PF+TT+DL+ LI+   
Sbjct: 139 SGVSAADVVNRAKVGDLIRIFGFLGEEKQPGRIARAIEKKRAEEPFRTTRDLAGLIEIVT 198

Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259
                ++IHPATR FQALR+FVN+E+ ELAQ L +AE++LK GG L+VV+FHSLEDR+VK
Sbjct: 199 PRKAKDKIHPATRVFQALRVFVNDELGELAQALFAAERSLKPGGRLVVVTFHSLEDRIVK 258

Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319
           KFF+ RSGK    RH+      PA+F++I K ++  + E+   N R+RSAKLRAG+RT  
Sbjct: 259 KFFSDRSGKAAGSRHLPMVEDKPAIFENIGKPMIAASDEEAELNPRARSAKLRAGLRTTA 318

Query: 320 RSIEDD-SFVHLPRLPTLSQFRG 341
            +   D S   LP L +L +  G
Sbjct: 319 PARAADFSIFELPDLASLEKMGG 341


>gi|325293473|ref|YP_004279337.1| S-adenosyl-methyltransferase MraW [Agrobacterium sp. H13-3]
 gi|325061326|gb|ADY65017.1| S-adenosyl-methyltransferase MraW [Agrobacterium sp. H13-3]
          Length = 341

 Score =  365 bits (937), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 183/323 (56%), Positives = 231/323 (71%), Gaps = 1/323 (0%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+PVLL +VIA L PA GKVILD TFGAGGY+++    G+NVIALDRDP A++ GQ  + 
Sbjct: 19  HIPVLLREVIAALEPASGKVILDGTFGAGGYTQAILDQGANVIALDRDPNAIAGGQAMVA 78

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
               + +L Q+ FS L  + P+ G+DGVV D+GVSSMQID  +RGFSFQK+GPLDMRMS 
Sbjct: 79  ANGGRLTLIQSQFSDLARHAPEGGLDGVVLDIGVSSMQIDEAERGFSFQKNGPLDMRMSS 138

Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199
           SG+SA+DVVN+A V DL RI G LGEEKQ  RIA AI KRR   PF+TT+DL+ LI+   
Sbjct: 139 SGVSAADVVNRAKVGDLIRIFGFLGEEKQPGRIARAIEKRRAEEPFRTTRDLAGLIEIVT 198

Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259
                ++IHPATR FQALR+FVN+E+ ELAQ L +AE+ALK GG L+VV+FHSLEDR+VK
Sbjct: 199 PRKAKDKIHPATRVFQALRVFVNDELGELAQALFAAERALKPGGRLVVVTFHSLEDRIVK 258

Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319
           KFF+ RSGK    RH+      PA+F++I K +V  + E+   N R+RSAKLRAG+RT  
Sbjct: 259 KFFSERSGKAAGSRHLPMVEDKPAIFENIGKPMVAASDEEAEINPRARSAKLRAGLRTAA 318

Query: 320 RSIEDD-SFVHLPRLPTLSQFRG 341
            +   D S   LP L +L +  G
Sbjct: 319 PARAADFSIFELPDLASLEKMGG 341


>gi|227822659|ref|YP_002826631.1| S-adenosyl-methyltransferase MraW [Sinorhizobium fredii NGR234]
 gi|262825425|sp|C3MEN7|RSMH_RHISN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|227341660|gb|ACP25878.1| S-adenosyl-methyltransferase MraW [Sinorhizobium fredii NGR234]
          Length = 341

 Score =  363 bits (931), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 179/323 (55%), Positives = 233/323 (72%), Gaps = 1/323 (0%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+PV+L +V+A L PAPGKVILD TFGAGGY+ +    G++VIALDRDP A++ GQ  + 
Sbjct: 19  HIPVMLAEVLAALEPAPGKVILDGTFGAGGYTSAILDAGADVIALDRDPTAIAAGQPMVA 78

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
               +  L  + FS+L D+VP+ G+DG+VFD+GVSSMQID  +RGFSFQK GPLDMRMS 
Sbjct: 79  AAGGRLRLIHSRFSELADHVPEGGLDGIVFDIGVSSMQIDEAERGFSFQKKGPLDMRMSA 138

Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199
           +G+SA+DVVN+A V DL RI G LGEEKQA RIA AI KRR  APF+TT++L++LI+   
Sbjct: 139 AGVSAADVVNRAKVSDLIRIFGFLGEEKQAGRIARAIEKRRAEAPFETTRNLANLIETVT 198

Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259
                ++IHPATR FQALRIFVN+E+ ELA  L +AE+ LK GG L+VV+FHSLEDR+VK
Sbjct: 199 PRKAKDKIHPATRVFQALRIFVNDELGELANALFAAERVLKPGGRLVVVTFHSLEDRIVK 258

Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319
            FF  RSGK    RH+    A  A F  + K +V  ++++ + N R+RSAKLRAG+RT  
Sbjct: 259 TFFQDRSGKAGGSRHLPLVTARDATFTPVGKPMVAASEDEASRNPRARSAKLRAGVRTPA 318

Query: 320 RSIEDD-SFVHLPRLPTLSQFRG 341
            S  +D S  +LP L +L++  G
Sbjct: 319 ASPGNDLSIFNLPELASLARLGG 341


>gi|15965937|ref|NP_386290.1| S-adenosyl-methyltransferase MraW [Sinorhizobium meliloti 1021]
 gi|307308247|ref|ZP_07587956.1| S-adenosyl-methyltransferase MraW [Sinorhizobium meliloti BL225C]
 gi|307319714|ref|ZP_07599139.1| S-adenosyl-methyltransferase MraW [Sinorhizobium meliloti AK83]
 gi|20139051|sp|Q92NL4|RSMH_RHIME RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|15075206|emb|CAC46763.1| Probable SAM-dependent methytransferase [Sinorhizobium meliloti
           1021]
 gi|306894645|gb|EFN25406.1| S-adenosyl-methyltransferase MraW [Sinorhizobium meliloti AK83]
 gi|306901245|gb|EFN31851.1| S-adenosyl-methyltransferase MraW [Sinorhizobium meliloti BL225C]
          Length = 341

 Score =  362 bits (929), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 179/323 (55%), Positives = 231/323 (71%), Gaps = 1/323 (0%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+PVLL++V+A L+PAPGK+ILD TFGAGGY+ +    G++V+ALDRDP A++ GQ  M 
Sbjct: 19  HIPVLLKEVLAALDPAPGKIILDGTFGAGGYASAILDAGADVVALDRDPTAIAAGQSMMH 78

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
               +  L  + FS L ++ P +G+DGVV D+GVSSMQID  +RGFSFQK GPLDMRMS 
Sbjct: 79  ASGGRLKLVHSRFSDLAEHAPAQGLDGVVLDIGVSSMQIDEAERGFSFQKKGPLDMRMSA 138

Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199
           +G+SA+DVVN+A V DL RI G LGEEKQA RIA AI KRR   PF+TT+DL++LI+   
Sbjct: 139 AGVSAADVVNRAKVSDLIRIFGFLGEEKQAGRIARAIEKRRAETPFETTRDLANLIETVT 198

Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259
                ++IHPATR FQALRIFVN+E+ ELA  L +AE+ALK GG L+VV+FHSLEDR+VK
Sbjct: 199 PRKAKDKIHPATRVFQALRIFVNDELGELAHALFAAERALKPGGRLVVVTFHSLEDRIVK 258

Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319
            FF  RSGK    RH+    A  A F  + K +V  ++E+ + N R+RSAKLRAG+RT  
Sbjct: 259 TFFQDRSGKAGGSRHLPLVTARAATFTPVGKPMVAASEEEASRNPRARSAKLRAGVRTEA 318

Query: 320 RSIEDD-SFVHLPRLPTLSQFRG 341
            S   D S  +LP L +L++  G
Sbjct: 319 PSPGADLSIFNLPELASLARLGG 341


>gi|222086453|ref|YP_002544986.1| S-adenosyl-methyltransferase protein [Agrobacterium radiobacter
           K84]
 gi|263446643|sp|B9JH59|RSMH_AGRRK RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|221723901|gb|ACM27057.1| S-adenosyl-methyltransferase protein [Agrobacterium radiobacter
           K84]
          Length = 341

 Score =  361 bits (926), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 180/323 (55%), Positives = 229/323 (70%), Gaps = 1/323 (0%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+PVLL++V+  L PAPGK+ILD TFGAGGY+ +    G+++IALDRDP A++ GQ  + 
Sbjct: 19  HIPVLLKEVLEALAPAPGKLILDGTFGAGGYTSAILAAGADMIALDRDPTAIAAGQSMVA 78

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
            +  + +L Q+ FSQL D+ P  G+DGVV D+GVSSMQ+D  +RGFSF K+GPLDMRMS 
Sbjct: 79  AHAGRLTLIQSQFSQLADHAPQGGLDGVVLDIGVSSMQLDEAERGFSFSKNGPLDMRMSA 138

Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199
           SG+SA+DVVN A + DL RI   LGEEKQA RIAHAI KRR  APF TT+DL+ LI+   
Sbjct: 139 SGVSAADVVNHAKLADLIRIFVFLGEEKQAPRIAHAIEKRRAEAPFVTTRDLAGLIEIVT 198

Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259
                ++IHPATR FQALRIFVN+E+ ELAQ L +AE+ALK GG L+VV+FHSLEDR+VK
Sbjct: 199 PRKAKDKIHPATRVFQALRIFVNDELGELAQALFAAERALKPGGRLVVVTFHSLEDRIVK 258

Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT-V 318
           KFFA RSG+    RHM   +   A F  I K ++  +  +   N R+RSAKLRAG+RT V
Sbjct: 259 KFFADRSGRAGGSRHMPMVHERLATFDPIGKPMISASDAEAEINPRARSAKLRAGLRTSV 318

Query: 319 ERSIEDDSFVHLPRLPTLSQFRG 341
           +    D S   LP L +L +  G
Sbjct: 319 QAEAADLSIFDLPNLASLGKLGG 341


>gi|86358458|ref|YP_470350.1| S-adenosyl-methyltransferase MraW [Rhizobium etli CFN 42]
 gi|123511371|sp|Q2K6B3|RSMH_RHIEC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|86282560|gb|ABC91623.1| S-adenosyl-methyltransferase protein [Rhizobium etli CFN 42]
          Length = 341

 Score =  359 bits (921), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 178/323 (55%), Positives = 227/323 (70%), Gaps = 1/323 (0%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+PVLL +V+A L+PAPGK+ILD TFGAGGYS +    G+ VIALDRDP A++ GQ  + 
Sbjct: 19  HIPVLLNEVLAALSPAPGKLILDGTFGAGGYSAAILAAGAEVIALDRDPSAIAAGQAMVA 78

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
            +  +  L  A FS L D+ P  G+DGVV D+GVSSMQID  +RGFSFQKSGPLDMRMS 
Sbjct: 79  AHAGRLRLIHAQFSNLGDHAPQGGLDGVVLDIGVSSMQIDEPERGFSFQKSGPLDMRMSA 138

Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199
           +G+SA+DVVN+A V DL RI   LGEE QA RIAHAI KRR+  PF+TT+DL+ LI+   
Sbjct: 139 TGVSAADVVNRAKVADLIRIFHFLGEENQAPRIAHAIEKRREEKPFETTRDLAGLIELVT 198

Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259
                ++IHPATR FQALRIFVN+E+ ELAQ L +AE+ LK GG L+VV+FHSLEDR+VK
Sbjct: 199 PRKMKDKIHPATRVFQALRIFVNDELGELAQALFAAERTLKPGGRLVVVTFHSLEDRIVK 258

Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT-V 318
           KFF+ R+G+    RH+  ++   A F +I K +V  ++ +   N R+RSAKLRAG+RT  
Sbjct: 259 KFFSDRAGRATGSRHLPAAHERAATFTAIGKPMVSASEAEAEANPRARSAKLRAGLRTDA 318

Query: 319 ERSIEDDSFVHLPRLPTLSQFRG 341
                D S    P L +L +  G
Sbjct: 319 AAEAADMSLFGFPNLASLGKLGG 341


>gi|116253056|ref|YP_768894.1| S-adenosyl-methyltransferase MraW [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|262825308|sp|Q1ME25|RSMH_RHIL3 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|115257704|emb|CAK08802.1| putative S-adenosyl-methyltransferase [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 341

 Score =  356 bits (914), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 177/323 (54%), Positives = 226/323 (69%), Gaps = 1/323 (0%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+PVLL++V+A L PAPGK ILD TFGAGGYS +    G+ VIALDRDP A++ GQ  + 
Sbjct: 19  HIPVLLDEVLAALAPAPGKFILDGTFGAGGYSSAILAAGAEVIALDRDPTAIAAGQAMVA 78

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
            +  +  L  + FS L D+ P  G+DGVV D+GVSSMQID  +RGFSFQK+GPLDMRMS 
Sbjct: 79  AHGGRLRLVHSQFSHLADHAPQGGLDGVVLDIGVSSMQIDEAERGFSFQKNGPLDMRMSA 138

Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199
            G+SA+DVVN+A V DL RI   LGEE QA RIAHAI KRR   PF+TT+DL+ LI+   
Sbjct: 139 EGVSAADVVNRAKVADLIRIFHFLGEESQAPRIAHAIEKRRAEKPFETTRDLAGLIELVT 198

Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259
                ++IHPATR FQALRIFVN+E+ ELAQ L +AE ALK GG L+VV+FHSLEDR+VK
Sbjct: 199 PRKMKDKIHPATRVFQALRIFVNDELGELAQALFAAETALKPGGRLVVVTFHSLEDRIVK 258

Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319
           KFF+ R+GK    RH+  ++   A F+++ K +V  ++ +   N R+RSAKLRAG+RT  
Sbjct: 259 KFFSDRAGKASGSRHLPVAHERAATFEAVGKPMVSASEAEAEINPRARSAKLRAGLRTYA 318

Query: 320 RS-IEDDSFVHLPRLPTLSQFRG 341
            +   D S    P L +L +  G
Sbjct: 319 AAEAADMSLFGFPNLASLGKLGG 341


>gi|222149144|ref|YP_002550101.1| S-adenosyl-methyltransferase MraW [Agrobacterium vitis S4]
 gi|263446656|sp|B9JY62|RSMH_AGRVS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|221736130|gb|ACM37093.1| S-adenosyl-methyltransferase MraW [Agrobacterium vitis S4]
          Length = 341

 Score =  356 bits (913), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 175/321 (54%), Positives = 230/321 (71%), Gaps = 1/321 (0%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+PVLLE VI  L P+ GKVILD TFGAGGY+ +    G++VIALDRDP A++ GQ  + 
Sbjct: 19  HIPVLLEPVIEALEPSAGKVILDGTFGAGGYTSAILDTGADVIALDRDPNAIAGGQAMVA 78

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
               + +L    FS L ++ P+ G+DG+V D+GVSSMQID  +RGFSFQ++GPLDMRMS 
Sbjct: 79  ARAGRLTLHHTRFSTLDNFAPEGGLDGIVLDIGVSSMQIDEAERGFSFQRNGPLDMRMSG 138

Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199
           +G+SA+DVVN+A V DL RI G LGEEKQ+ RIA AI KRR + PFQTT+DL+ +I+   
Sbjct: 139 TGVSAADVVNRAKVGDLIRIFGFLGEEKQSGRIARAIEKRRVNHPFQTTRDLAGMIEIVT 198

Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259
                ++IHPATR FQALR+FVN+E+ ELA+ L +AE+ALK GG L+VV+FHSLEDR+VK
Sbjct: 199 PRKAKDKIHPATRVFQALRVFVNDELGELAEALFAAERALKPGGRLVVVTFHSLEDRIVK 258

Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319
           KFF+ RSGK    RHM  +   PA F+ + K +V  T+E+   N R+RSAKLRAG+RT  
Sbjct: 259 KFFSDRSGKAAGSRHMPMAFERPATFEPVGKGMVTATEEEAEINPRARSAKLRAGIRTAH 318

Query: 320 RSIEDD-SFVHLPRLPTLSQF 339
            +++ D S   LP L  + + 
Sbjct: 319 PAMKADFSIFDLPDLAEIERL 339


>gi|190892591|ref|YP_001979133.1| S-adenosyl-methyltransferase [Rhizobium etli CIAT 652]
 gi|262825238|sp|B3PTW8|RSMH_RHIE6 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|190697870|gb|ACE91955.1| S-adenosyl-methyltransferase protein [Rhizobium etli CIAT 652]
          Length = 341

 Score =  353 bits (906), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 174/323 (53%), Positives = 225/323 (69%), Gaps = 1/323 (0%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+PVLLE+V+A L PAPGK+ILD TFGAGGY+ +    G+ VIALDRDP A++ GQ  + 
Sbjct: 19  HIPVLLEEVLAALAPAPGKLILDGTFGAGGYTSAILAAGAEVIALDRDPTAIAAGQAMVA 78

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
            +  +  L  + FS L D+ P  G+DGVV D+GVSSMQ+D  +RGFSFQK+GPLDMRMS 
Sbjct: 79  AHGGRLKLVHSQFSHLADHAPQGGLDGVVLDIGVSSMQLDEAERGFSFQKNGPLDMRMSA 138

Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199
           +G+SA+DV+N+A V DL RI   LGEE QA RIAHAI KRR   PF+TT+DL+ LI+   
Sbjct: 139 TGVSAADVLNRAKVADLIRIFHFLGEESQAPRIAHAIEKRRAEKPFETTRDLAGLIELVT 198

Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259
                ++IHPATR FQALRIFVN+E+ ELAQ L +AE  LK GG L+VV+FHSLEDR+VK
Sbjct: 199 PRKMKDKIHPATRVFQALRIFVNDELGELAQALFAAETVLKPGGRLVVVTFHSLEDRIVK 258

Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319
           KFF+ R+GK    RH+  ++   A F ++ K +V  ++ +   N R+RSAKLRAG RT  
Sbjct: 259 KFFSDRAGKASGSRHLPAAHERAATFTAVGKSMVSASEAEAESNPRARSAKLRAGQRTAA 318

Query: 320 RSIEDD-SFVHLPRLPTLSQFRG 341
            +   D S    P L +L +  G
Sbjct: 319 AAEAADMSLFGFPNLASLGKLGG 341


>gi|262831477|sp|A6UB93|RSMH_SINMW RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 341

 Score =  344 bits (882), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 183/323 (56%), Positives = 229/323 (70%), Gaps = 1/323 (0%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+PVLLE+V+A L PAPGKVILD TFGAGGY+ +    G+ VIALDRDP A++ GQ  + 
Sbjct: 19  HIPVLLEEVLAALEPAPGKVILDGTFGAGGYASAILDAGAEVIALDRDPTAIAAGQSMVS 78

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
               + SL  + FS L ++ P +G+DGVV D+GVSSMQID  +RGFSFQK GPLDMRMS 
Sbjct: 79  ASGGRLSLIHSRFSGLAEHAPAEGLDGVVLDVGVSSMQIDEAERGFSFQKKGPLDMRMSA 138

Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199
           +G+SA+DVVN+A V DL RI G LGEEKQA RIA  I KRR  APF+TT+DL++LI+   
Sbjct: 139 AGVSAADVVNRAKVSDLIRIFGFLGEEKQAGRIARTIEKRRAEAPFETTRDLANLIETVT 198

Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259
                ++IHPATR FQALRIFVN+E+ ELA  L +AE+ALK GG L+VVSFHSLEDR+VK
Sbjct: 199 PRKAKDKIHPATRVFQALRIFVNDELGELAAALFAAERALKPGGRLVVVSFHSLEDRIVK 258

Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319
            FF  RSGK    RH+    A  A F  + K +V  + E+ + N R+RSAKLRAG+RT  
Sbjct: 259 TFFQDRSGKAGGSRHLPLVTARAATFAPVGKPMVSASDEEASRNPRARSAKLRAGIRTAA 318

Query: 320 RSIEDD-SFVHLPRLPTLSQFRG 341
            S   D S  +LP L +L++  G
Sbjct: 319 PSPGADLSIFNLPELASLARLGG 341


>gi|150397291|ref|YP_001327758.1| S-adenosyl-methyltransferase MraW [Sinorhizobium medicae WSM419]
 gi|150028806|gb|ABR60923.1| S-adenosyl-methyltransferase MraW [Sinorhizobium medicae WSM419]
          Length = 362

 Score =  343 bits (881), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 183/323 (56%), Positives = 229/323 (70%), Gaps = 1/323 (0%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+PVLLE+V+A L PAPGKVILD TFGAGGY+ +    G+ VIALDRDP A++ GQ  + 
Sbjct: 40  HIPVLLEEVLAALEPAPGKVILDGTFGAGGYASAILDAGAEVIALDRDPTAIAAGQSMVS 99

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
               + SL  + FS L ++ P +G+DGVV D+GVSSMQID  +RGFSFQK GPLDMRMS 
Sbjct: 100 ASGGRLSLIHSRFSGLAEHAPAEGLDGVVLDVGVSSMQIDEAERGFSFQKKGPLDMRMSA 159

Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199
           +G+SA+DVVN+A V DL RI G LGEEKQA RIA  I KRR  APF+TT+DL++LI+   
Sbjct: 160 AGVSAADVVNRAKVSDLIRIFGFLGEEKQAGRIARTIEKRRAEAPFETTRDLANLIETVT 219

Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259
                ++IHPATR FQALRIFVN+E+ ELA  L +AE+ALK GG L+VVSFHSLEDR+VK
Sbjct: 220 PRKAKDKIHPATRVFQALRIFVNDELGELAAALFAAERALKPGGRLVVVSFHSLEDRIVK 279

Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319
            FF  RSGK    RH+    A  A F  + K +V  + E+ + N R+RSAKLRAG+RT  
Sbjct: 280 TFFQDRSGKAGGSRHLPLVTARAATFAPVGKPMVSASDEEASRNPRARSAKLRAGIRTAA 339

Query: 320 RSIEDD-SFVHLPRLPTLSQFRG 341
            S   D S  +LP L +L++  G
Sbjct: 340 PSPGADLSIFNLPELASLARLGG 362


>gi|209550182|ref|YP_002282099.1| S-adenosyl-methyltransferase MraW [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|262825400|sp|B5ZWK2|RSMH_RHILW RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|209535938|gb|ACI55873.1| S-adenosyl-methyltransferase MraW [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 341

 Score =  341 bits (874), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 179/324 (55%), Positives = 230/324 (70%), Gaps = 3/324 (0%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+PVLL++V++ L PAPGK+ILD TFGAGGYS +    G+ VIALDRDP A++ GQ  + 
Sbjct: 19  HIPVLLDEVLSALAPAPGKLILDGTFGAGGYSSAILAAGAEVIALDRDPTAIASGQAMVA 78

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
            +  +  L  + FS L D+ P  G+DGVV D+GVSSMQID  +RGFSFQK+GPLDMRMS 
Sbjct: 79  AHGGRLKLVHSQFSHLADHAPQGGLDGVVLDIGVSSMQIDEAERGFSFQKNGPLDMRMSA 138

Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199
           +G+SA+DVVN+A V DL RI   LGEE QA RIAHAI KRR+  PF+TT+DL+ LI+   
Sbjct: 139 AGVSAADVVNRAKVADLIRIFHFLGEESQAPRIAHAIEKRREEKPFETTRDLAGLIELVT 198

Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259
                ++IHPATR FQALRIFVN+E+ ELAQ L +AE ALK GG L+VV+FHSLEDR+VK
Sbjct: 199 PRKMKDKIHPATRVFQALRIFVNDELGELAQALFAAEAALKPGGRLVVVTFHSLEDRIVK 258

Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319
           KFF+ R+GK    RH+  ++   A F +I K +V  ++ +   N R+RSAKLRAG+RT E
Sbjct: 259 KFFSDRAGKASGSRHLPVAHERAATFAAIGKPMVSASEAEAEINPRARSAKLRAGLRT-E 317

Query: 320 RSIE--DDSFVHLPRLPTLSQFRG 341
            + E  D S    P L +L +  G
Sbjct: 318 AAAEAADMSLFGFPNLASLGKLGG 341


>gi|163843695|ref|YP_001628099.1| S-adenosyl-methyltransferase MraW [Brucella suis ATCC 23445]
 gi|263446883|sp|B0CHM8|RSMH_BRUSI RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|163674418|gb|ABY38529.1| S-adenosyl-methyltransferase MraW [Brucella suis ATCC 23445]
          Length = 346

 Score =  328 bits (842), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 168/326 (51%), Positives = 218/326 (66%), Gaps = 6/326 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           HVPVL+ +VI  L PAPG VI+D TFGAGGY+R   + G++VIA+DRDP A+  G+   +
Sbjct: 18  HVPVLIAEVIDALKPAPGAVIVDGTFGAGGYTRRILETGADVIAIDRDPTAIEAGRAMEK 77

Query: 80  DYKEQFSLFQATFSQLQDYVP-----DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++  + +L ++ FS L + V       K VDGVV D+GVSSMQID  +RGFSFQK GPLD
Sbjct: 78  EFPGRLNLVESRFSALDEAVARMSGAGKKVDGVVLDIGVSSMQIDEAERGFSFQKDGPLD 137

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRMS  G SA+D VN+    DL RI   LGEE+ A RIA  I KRR + PF  T DL++ 
Sbjct: 138 MRMSSGGPSAADAVNRLKTGDLARIFNFLGEERHAGRIARMIEKRRAAKPFTRTLDLANA 197

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           I+  V  +  +RIHPATR FQALR++VN+E+ ELA+ L +AE+ LK GG L+VV+FHSLE
Sbjct: 198 IETLVGRNPKDRIHPATRVFQALRVYVNDELGELARALLAAERILKPGGRLVVVTFHSLE 257

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           DR+VK+FFA R+G     RHM  ++     F    K  V PT E+   N R+RSAKLRAG
Sbjct: 258 DRMVKRFFADRAGGSAGSRHMPETHMRLPSFTPAVKGAVGPTPEEEERNPRARSAKLRAG 317

Query: 315 MRTVERSIEDD-SFVHLPRLPTLSQF 339
           +RT    +EDD S   LP+LP  ++ 
Sbjct: 318 IRTENPPLEDDLSLFGLPKLPETNEL 343


>gi|148559451|ref|YP_001259332.1| S-adenosyl-methyltransferase MraW [Brucella ovis ATCC 25840]
 gi|263446879|sp|A5VRI5|RSMH_BRUO2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|148370708|gb|ABQ60687.1| S-adenosyl-methyltransferase MraW [Brucella ovis ATCC 25840]
          Length = 346

 Score =  328 bits (841), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 168/326 (51%), Positives = 218/326 (66%), Gaps = 6/326 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           HVPVL+ +VI  L PAPG VI+D TFGAGGY+R   + G++VIA+DRDP A+  G+   +
Sbjct: 18  HVPVLIAEVIDALKPAPGAVIVDGTFGAGGYTRRILETGADVIAIDRDPTAIEAGRAMEK 77

Query: 80  DYKEQFSLFQATFSQLQDYVP-----DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++  + +L ++ FS L + V       K VDGVV D+GVSSMQID  +RGFSFQK GPLD
Sbjct: 78  EFPGRLNLVESRFSALDEAVARMSGAGKKVDGVVLDIGVSSMQIDEAERGFSFQKDGPLD 137

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRMS  G SA+D VN+    DL RI   LGEE+ A RIA  I KRR + PF  T DL++ 
Sbjct: 138 MRMSSRGSSAADAVNRLKTGDLARIFNFLGEERHAGRIARMIEKRRAAKPFTRTLDLANA 197

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           I+  V  +  +RIHPATR FQALR++VN+E+ ELA+ L +AE+ LK GG L+VV+FHSLE
Sbjct: 198 IETLVGRNPKDRIHPATRVFQALRVYVNDELGELARALLAAERILKPGGRLVVVTFHSLE 257

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           DR+VK+FFA R+G     RHM  ++     F    K  V PT E+   N R+RSAKLRAG
Sbjct: 258 DRMVKRFFADRAGGSAGSRHMPETHMRLPSFTPAVKGAVGPTPEEEERNPRARSAKLRAG 317

Query: 315 MRTVERSIEDD-SFVHLPRLPTLSQF 339
           +RT    +EDD S   LP+LP  ++ 
Sbjct: 318 IRTENSPLEDDLSLFGLPKLPETNEL 343


>gi|254714473|ref|ZP_05176284.1| S-adenosyl-methyltransferase MraW [Brucella ceti M644/93/1]
 gi|254717371|ref|ZP_05179182.1| S-adenosyl-methyltransferase MraW [Brucella ceti M13/05/1]
 gi|261219203|ref|ZP_05933484.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           ceti M13/05/1]
 gi|261322263|ref|ZP_05961460.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           ceti M644/93/1]
 gi|260924292|gb|EEX90860.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           ceti M13/05/1]
 gi|261294953|gb|EEX98449.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           ceti M644/93/1]
          Length = 346

 Score =  328 bits (841), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 168/326 (51%), Positives = 218/326 (66%), Gaps = 6/326 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           HVPVL+ +VI  L PAPG VI+D TFGAGGY+R   + G++VIA+DRDP A+  G+   +
Sbjct: 18  HVPVLIAEVIDALKPAPGAVIVDGTFGAGGYTRRILETGADVIAIDRDPTAIEAGRAMEK 77

Query: 80  DYKEQFSLFQATFSQLQDYVP-----DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++  + +L ++ FS L + V       K VDGVV D+GVSSMQID  +RGFSFQK GPLD
Sbjct: 78  EFPGRLNLVESRFSALDEAVARMSGAGKKVDGVVLDIGVSSMQIDEAERGFSFQKDGPLD 137

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRMS  G SA+D VN+    DL RI   LGEE+ A RIA  I KRR + PF  T DL++ 
Sbjct: 138 MRMSSRGPSAADAVNRLKTGDLARIFNFLGEERHAGRIARMIEKRRAAKPFTRTLDLTNA 197

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           I+  V  +  +RIHPATR FQALR++VN+E+ ELA+ L +AE+ LK GG L+VV+FHSLE
Sbjct: 198 IETLVGRNPKDRIHPATRVFQALRVYVNDELGELARALLAAERILKPGGRLVVVTFHSLE 257

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           DR+VK+FFA R+G     RHM  ++     F    K  V PT E+   N R+RSAKLRAG
Sbjct: 258 DRMVKRFFADRAGGSAGSRHMPETHMRLPSFTPAVKGAVGPTPEEEERNPRARSAKLRAG 317

Query: 315 MRTVERSIEDD-SFVHLPRLPTLSQF 339
           +RT    +EDD S   LP+LP  ++ 
Sbjct: 318 IRTENPPLEDDLSLFGLPKLPETNEL 343


>gi|17986854|ref|NP_539488.1| S-adenosyl-methyltransferase MraW [Brucella melitensis bv. 1 str.
           16M]
 gi|23502310|ref|NP_698437.1| S-adenosyl-methyltransferase MraW [Brucella suis 1330]
 gi|62290332|ref|YP_222125.1| S-adenosyl-methyltransferase MraW [Brucella abortus bv. 1 str.
           9-941]
 gi|82700256|ref|YP_414830.1| S-adenosyl-methyltransferase MraW [Brucella melitensis biovar
           Abortus 2308]
 gi|161619387|ref|YP_001593274.1| S-adenosyl-methyltransferase MraW [Brucella canis ATCC 23365]
 gi|189024565|ref|YP_001935333.1| S-adenosyl-methyltransferase MraW [Brucella abortus S19]
 gi|225852921|ref|YP_002733154.1| S-adenosyl-methyltransferase MraW [Brucella melitensis ATCC 23457]
 gi|254694123|ref|ZP_05155951.1| S-adenosyl-methyltransferase MraW [Brucella abortus bv. 3 str.
           Tulya]
 gi|254697775|ref|ZP_05159603.1| S-adenosyl-methyltransferase MraW [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254702160|ref|ZP_05163988.1| S-adenosyl-methyltransferase MraW [Brucella suis bv. 5 str. 513]
 gi|254704697|ref|ZP_05166525.1| S-adenosyl-methyltransferase MraW [Brucella suis bv. 3 str. 686]
 gi|254708111|ref|ZP_05169939.1| S-adenosyl-methyltransferase MraW [Brucella pinnipedialis
           M163/99/10]
 gi|254710480|ref|ZP_05172291.1| S-adenosyl-methyltransferase MraW [Brucella pinnipedialis B2/94]
 gi|254730664|ref|ZP_05189242.1| S-adenosyl-methyltransferase MraW [Brucella abortus bv. 4 str. 292]
 gi|256031974|ref|ZP_05445588.1| S-adenosyl-methyltransferase MraW [Brucella pinnipedialis
           M292/94/1]
 gi|256045069|ref|ZP_05447970.1| S-adenosyl-methyltransferase MraW [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256160173|ref|ZP_05457867.1| S-adenosyl-methyltransferase MraW [Brucella ceti M490/95/1]
 gi|256255379|ref|ZP_05460915.1| S-adenosyl-methyltransferase MraW [Brucella ceti B1/94]
 gi|256263598|ref|ZP_05466130.1| bacterial methyltransferase [Brucella melitensis bv. 2 str. 63/9]
 gi|256369855|ref|YP_003107366.1| S-adenosyl-methyltransferase [Brucella microti CCM 4915]
 gi|260169111|ref|ZP_05755922.1| S-adenosyl-methyltransferase MraW [Brucella sp. F5/99]
 gi|260546874|ref|ZP_05822613.1| bacterial methyltransferase [Brucella abortus NCTC 8038]
 gi|260565332|ref|ZP_05835816.1| bacterial methyltransferase [Brucella melitensis bv. 1 str. 16M]
 gi|260566056|ref|ZP_05836526.1| bacterial methyltransferase [Brucella suis bv. 4 str. 40]
 gi|260758381|ref|ZP_05870729.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           abortus bv. 4 str. 292]
 gi|260762207|ref|ZP_05874550.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|261214424|ref|ZP_05928705.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           abortus bv. 3 str. Tulya]
 gi|261222582|ref|ZP_05936863.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           ceti B1/94]
 gi|261315615|ref|ZP_05954812.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           pinnipedialis M163/99/10]
 gi|261318052|ref|ZP_05957249.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           pinnipedialis B2/94]
 gi|261752731|ref|ZP_05996440.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           suis bv. 5 str. 513]
 gi|261755390|ref|ZP_05999099.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           suis bv. 3 str. 686]
 gi|261758618|ref|ZP_06002327.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           sp. F5/99]
 gi|265989084|ref|ZP_06101641.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           pinnipedialis M292/94/1]
 gi|265991497|ref|ZP_06104054.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|265998547|ref|ZP_06111104.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           ceti M490/95/1]
 gi|54037823|sp|P65428|RSMH_BRUSU RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|54041486|sp|P65427|RSMH_BRUME RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|68565395|sp|Q57C70|RSMH_BRUAB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|88909188|sp|Q2YM63|RSMH_BRUA2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263445807|sp|A9M698|RSMH_BRUC2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263445814|sp|B2S6R2|RSMH_BRUA1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263447062|sp|C0RE78|RSMH_BRUMB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|17982491|gb|AAL51752.1| sam-dependent methytransferase [Brucella melitensis bv. 1 str. 16M]
 gi|23348287|gb|AAN30352.1| conserved hypothetical protein TIGR00006 [Brucella suis 1330]
 gi|62196464|gb|AAX74764.1| conserved hypothetical protein TIGR00006 [Brucella abortus bv. 1
           str. 9-941]
 gi|82616357|emb|CAJ11414.1| Bacterial methyltransferase [Brucella melitensis biovar Abortus
           2308]
 gi|161336198|gb|ABX62503.1| S-adenosyl-methyltransferase MraW [Brucella canis ATCC 23365]
 gi|189020137|gb|ACD72859.1| Bacterial methyltransferase [Brucella abortus S19]
 gi|225641286|gb|ACO01200.1| S-adenosyl-methyltransferase MraW [Brucella melitensis ATCC 23457]
 gi|256000018|gb|ACU48417.1| S-adenosyl-methyltransferase [Brucella microti CCM 4915]
 gi|260095924|gb|EEW79801.1| bacterial methyltransferase [Brucella abortus NCTC 8038]
 gi|260151400|gb|EEW86494.1| bacterial methyltransferase [Brucella melitensis bv. 1 str. 16M]
 gi|260155574|gb|EEW90654.1| bacterial methyltransferase [Brucella suis bv. 4 str. 40]
 gi|260668699|gb|EEX55639.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           abortus bv. 4 str. 292]
 gi|260672639|gb|EEX59460.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|260916031|gb|EEX82892.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           abortus bv. 3 str. Tulya]
 gi|260921166|gb|EEX87819.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           ceti B1/94]
 gi|261297275|gb|EEY00772.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           pinnipedialis B2/94]
 gi|261304641|gb|EEY08138.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           pinnipedialis M163/99/10]
 gi|261738602|gb|EEY26598.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           sp. F5/99]
 gi|261742484|gb|EEY30410.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           suis bv. 5 str. 513]
 gi|261745143|gb|EEY33069.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           suis bv. 3 str. 686]
 gi|262553171|gb|EEZ09005.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           ceti M490/95/1]
 gi|263002281|gb|EEZ14856.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|263093648|gb|EEZ17653.1| bacterial methyltransferase [Brucella melitensis bv. 2 str. 63/9]
 gi|264661281|gb|EEZ31542.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           pinnipedialis M292/94/1]
          Length = 346

 Score =  328 bits (841), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 168/326 (51%), Positives = 218/326 (66%), Gaps = 6/326 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           HVPVL+ +VI  L PAPG VI+D TFGAGGY+R   + G++VIA+DRDP A+  G+   +
Sbjct: 18  HVPVLIAEVIDALKPAPGAVIVDGTFGAGGYTRRILETGADVIAIDRDPTAIEAGRAMEK 77

Query: 80  DYKEQFSLFQATFSQLQDYVP-----DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++  + +L ++ FS L + V       K VDGVV D+GVSSMQID  +RGFSFQK GPLD
Sbjct: 78  EFPGRLNLVESRFSALDEAVARMSGAGKKVDGVVLDIGVSSMQIDEAERGFSFQKDGPLD 137

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRMS  G SA+D VN+    DL RI   LGEE+ A RIA  I KRR + PF  T DL++ 
Sbjct: 138 MRMSSRGPSAADAVNRLKTGDLARIFNFLGEERHAGRIARMIEKRRAAKPFTRTLDLANA 197

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           I+  V  +  +RIHPATR FQALR++VN+E+ ELA+ L +AE+ LK GG L+VV+FHSLE
Sbjct: 198 IETLVGRNPKDRIHPATRVFQALRVYVNDELGELARALLAAERILKPGGRLVVVTFHSLE 257

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           DR+VK+FFA R+G     RHM  ++     F    K  V PT E+   N R+RSAKLRAG
Sbjct: 258 DRMVKRFFADRAGGSAGSRHMPETHMRLPSFTPAVKGAVGPTPEEEERNPRARSAKLRAG 317

Query: 315 MRTVERSIEDD-SFVHLPRLPTLSQF 339
           +RT    +EDD S   LP+LP  ++ 
Sbjct: 318 IRTENPPLEDDLSLFGLPKLPETNEL 343


>gi|256113992|ref|ZP_05454775.1| S-adenosyl-methyltransferase MraW [Brucella melitensis bv. 3 str.
           Ether]
 gi|265995335|ref|ZP_06107892.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           melitensis bv. 3 str. Ether]
 gi|262766448|gb|EEZ12237.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           melitensis bv. 3 str. Ether]
          Length = 346

 Score =  328 bits (841), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 168/326 (51%), Positives = 218/326 (66%), Gaps = 6/326 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           HVPVL+ +VI  L PAPG VI+D TFGAGGY+R   + G++VIA+DRDP A+  G+   +
Sbjct: 18  HVPVLIAEVIDALKPAPGAVIVDGTFGAGGYTRRILETGADVIAIDRDPTAIEAGRAMEK 77

Query: 80  DYKEQFSLFQATFSQLQDYVP-----DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++  + +L ++ FS L + V       K VDGVV D+GVSSMQID  +RGFSFQK GPLD
Sbjct: 78  EFPGRLNLVESRFSALDEAVARMSGAGKKVDGVVLDIGVSSMQIDEAERGFSFQKDGPLD 137

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRMS  G SA+D VN+    DL RI   LGEE+ A RIA  I KRR + PF  T DL++ 
Sbjct: 138 MRMSSRGPSAADAVNRLKTGDLARIFNFLGEERHAGRIARMIEKRRAAKPFTRTLDLANA 197

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           I+  V  +  +RIHPATR FQALR++VN+E+ ELA+ L +AE+ LK GG L+VV+FHSLE
Sbjct: 198 IETLVGRNPKDRIHPATRVFQALRVYVNDELGELARALLAAERILKPGGRLVVVTFHSLE 257

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           DR+VK+FFA R+G     RHM  ++     F    K  V PT E+   N R+RSAKLRAG
Sbjct: 258 DRMVKRFFADRAGGSAGSRHMPETHMRLPSFTPAVKGAVGPTPEEEERNPRARSAKLRAG 317

Query: 315 MRTVERSIEDD-SFVHLPRLPTLSQF 339
           +RT    +EDD S   LP+LP  ++ 
Sbjct: 318 IRTENAPLEDDLSLFGLPKLPETNEL 343


>gi|237815839|ref|ZP_04594836.1| S-adenosyl-methyltransferase MraW [Brucella abortus str. 2308 A]
 gi|237789137|gb|EEP63348.1| S-adenosyl-methyltransferase MraW [Brucella abortus str. 2308 A]
 gi|326409463|gb|ADZ66528.1| Bacterial methyltransferase [Brucella melitensis M28]
 gi|326539169|gb|ADZ87384.1| S-adenosyl-methyltransferase MraW [Brucella melitensis M5-90]
          Length = 347

 Score =  328 bits (841), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 168/326 (51%), Positives = 218/326 (66%), Gaps = 6/326 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           HVPVL+ +VI  L PAPG VI+D TFGAGGY+R   + G++VIA+DRDP A+  G+   +
Sbjct: 19  HVPVLIAEVIDALKPAPGAVIVDGTFGAGGYTRRILETGADVIAIDRDPTAIEAGRAMEK 78

Query: 80  DYKEQFSLFQATFSQLQDYVP-----DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++  + +L ++ FS L + V       K VDGVV D+GVSSMQID  +RGFSFQK GPLD
Sbjct: 79  EFPGRLNLVESRFSALDEAVARMSGAGKKVDGVVLDIGVSSMQIDEAERGFSFQKDGPLD 138

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRMS  G SA+D VN+    DL RI   LGEE+ A RIA  I KRR + PF  T DL++ 
Sbjct: 139 MRMSSRGPSAADAVNRLKTGDLARIFNFLGEERHAGRIARMIEKRRAAKPFTRTLDLANA 198

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           I+  V  +  +RIHPATR FQALR++VN+E+ ELA+ L +AE+ LK GG L+VV+FHSLE
Sbjct: 199 IETLVGRNPKDRIHPATRVFQALRVYVNDELGELARALLAAERILKPGGRLVVVTFHSLE 258

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           DR+VK+FFA R+G     RHM  ++     F    K  V PT E+   N R+RSAKLRAG
Sbjct: 259 DRMVKRFFADRAGGSAGSRHMPETHMRLPSFTPAVKGAVGPTPEEEERNPRARSAKLRAG 318

Query: 315 MRTVERSIEDD-SFVHLPRLPTLSQF 339
           +RT    +EDD S   LP+LP  ++ 
Sbjct: 319 IRTENPPLEDDLSLFGLPKLPETNEL 344


>gi|254689633|ref|ZP_05152887.1| S-adenosyl-methyltransferase MraW [Brucella abortus bv. 6 str. 870]
 gi|256257883|ref|ZP_05463419.1| S-adenosyl-methyltransferase MraW [Brucella abortus bv. 9 str. C68]
 gi|260755162|ref|ZP_05867510.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           abortus bv. 6 str. 870]
 gi|260884175|ref|ZP_05895789.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           abortus bv. 9 str. C68]
 gi|297248720|ref|ZP_06932438.1| methylase MraW [Brucella abortus bv. 5 str. B3196]
 gi|260675270|gb|EEX62091.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           abortus bv. 6 str. 870]
 gi|260873703|gb|EEX80772.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           abortus bv. 9 str. C68]
 gi|297175889|gb|EFH35236.1| methylase MraW [Brucella abortus bv. 5 str. B3196]
          Length = 346

 Score =  327 bits (839), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 168/326 (51%), Positives = 218/326 (66%), Gaps = 6/326 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           HVPVL+ +VI  L PAPG VI+D TFGAGGY+R   + G++VIA+DRDP A+  G+   +
Sbjct: 18  HVPVLIAEVIDALKPAPGAVIVDGTFGAGGYTRRILETGADVIAIDRDPTAIEAGRAMEK 77

Query: 80  DYKEQFSLFQATFSQLQDYVP-----DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++  + +L ++ FS L + V       K VDGVV D+GVSSMQID  +RGFSFQK GPLD
Sbjct: 78  EFPGRLNLVESRFSALDEAVARMSGAGKKVDGVVLDIGVSSMQIDEAERGFSFQKDGPLD 137

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRMS  G SA+D VN+    DL RI   LGEE+ A RIA  I KRR + PF  T DL++ 
Sbjct: 138 MRMSSRGPSAADAVNRLKTGDLARIFNFLGEERHAGRIARMIEKRRAAKPFTRTLDLANA 197

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           I+  V  +  +RIHPATR FQALR++VN+E+ ELA+ L +AE+ LK GG L+VV+FHSLE
Sbjct: 198 IETLVGRNPKDRIHPATRVFQALRVYVNDELGELARALLAAERILKPGGRLVVVTFHSLE 257

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           DR+VK+FFA R+G     RHM  ++     F    K  V PT E+   N R+RSAKLRAG
Sbjct: 258 DRMVKRFFADRAGGSAGSRHMPETHMRLPSFTPAVKGPVGPTPEEEERNPRARSAKLRAG 317

Query: 315 MRTVERSIEDD-SFVHLPRLPTLSQF 339
           +RT    +EDD S   LP+LP  ++ 
Sbjct: 318 IRTENPPLEDDLSLFGLPKLPETNEL 343


>gi|256061496|ref|ZP_05451640.1| S-adenosyl-methyltransferase MraW [Brucella neotomae 5K33]
 gi|261325503|ref|ZP_05964700.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           neotomae 5K33]
 gi|261301483|gb|EEY04980.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           neotomae 5K33]
          Length = 346

 Score =  327 bits (837), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 168/326 (51%), Positives = 217/326 (66%), Gaps = 6/326 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           HVPVL+ +VI  L PAPG VI+D TFGAGGY+R   + G++VIA+DRDP A+  G+   +
Sbjct: 18  HVPVLIAEVIDALKPAPGAVIVDGTFGAGGYTRRILETGADVIAIDRDPTAIEAGRAMEK 77

Query: 80  DYKEQFSLFQATFSQLQDYVP-----DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++  +  L ++ FS L + V       K VDGVV D+GVSSMQID  +RGFSFQK GPLD
Sbjct: 78  EFPGRLILVESRFSALDEAVARMSGAGKKVDGVVLDIGVSSMQIDEAERGFSFQKDGPLD 137

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRMS  G SA+D VN+    DL RI   LGEE+ A RIA  I KRR + PF  T DL++ 
Sbjct: 138 MRMSSRGPSAADAVNRLKTGDLARIFNFLGEERHAGRIARMIEKRRAAKPFTRTLDLANA 197

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           I+  V  +  +RIHPATR FQALR++VN+E+ ELA+ L +AE+ LK GG L+VV+FHSLE
Sbjct: 198 IETLVGRNPKDRIHPATRVFQALRVYVNDELGELARALLAAERILKPGGRLVVVTFHSLE 257

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           DR+VK+FFA R+G     RHM  ++     F    K  V PT E+   N R+RSAKLRAG
Sbjct: 258 DRMVKRFFADRAGGSAGSRHMPETHMRLPSFTPAVKGAVGPTPEEEERNPRARSAKLRAG 317

Query: 315 MRTVERSIEDD-SFVHLPRLPTLSQF 339
           +RT    +EDD S   LP+LP  ++ 
Sbjct: 318 IRTENPPLEDDLSLFGLPKLPETNEL 343


>gi|254719470|ref|ZP_05181281.1| S-adenosyl-methyltransferase MraW [Brucella sp. 83/13]
 gi|265984477|ref|ZP_06097212.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           sp. 83/13]
 gi|306839249|ref|ZP_07472066.1| S-adenosyl-methyltransferase MraW [Brucella sp. NF 2653]
 gi|264663069|gb|EEZ33330.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           sp. 83/13]
 gi|306405796|gb|EFM62058.1| S-adenosyl-methyltransferase MraW [Brucella sp. NF 2653]
          Length = 346

 Score =  327 bits (837), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 166/326 (50%), Positives = 218/326 (66%), Gaps = 6/326 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           HVPVL+ ++I  L PAPG VI+D TFGAGGY+R   + G++VIA+DRDP A+  G+   +
Sbjct: 18  HVPVLIAEMIDALKPAPGAVIVDGTFGAGGYTRRILETGADVIAIDRDPTAIEAGRAMEK 77

Query: 80  DYKEQFSLFQATFSQLQDYVP-----DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++  + +L ++ FS L + V       K VDGVV D+GVSSMQID  +RGFSFQK GPLD
Sbjct: 78  EFPGRLNLVESRFSALDEAVARMSGAGKKVDGVVLDIGVSSMQIDEAERGFSFQKDGPLD 137

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRMS  G SA+D VN+    DL RI   LGEE+ A RIA  I KRR + PF  T DL++ 
Sbjct: 138 MRMSSRGASAADAVNRLKTGDLARIFNFLGEERHAGRIARMIEKRRAAKPFTRTLDLANA 197

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           I+  V  +  +RIHPATR FQALR++VN+E+ ELA+ L +AE+ +K GG L+VV+FHSLE
Sbjct: 198 IETLVGRNPKDRIHPATRVFQALRVYVNDELGELARALLAAERIIKPGGRLVVVTFHSLE 257

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           DR+VK+FFA R+G     RHM  ++     F    K  V PT E+   N R+RSAKLRAG
Sbjct: 258 DRMVKRFFADRAGGSAGSRHMPETHMRLPSFTPAVKGAVGPTPEEEERNPRARSAKLRAG 317

Query: 315 MRTVERSIEDD-SFVHLPRLPTLSQF 339
           +RT    +EDD S   LP+LP  ++ 
Sbjct: 318 IRTENPPLEDDLSLFGLPKLPETNEL 343


>gi|241205565|ref|YP_002976661.1| S-adenosyl-methyltransferase MraW [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|262825385|sp|C6ARU7|RSMH_RHILS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|240859455|gb|ACS57122.1| S-adenosyl-methyltransferase MraW [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 341

 Score =  326 bits (835), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 180/324 (55%), Positives = 227/324 (70%), Gaps = 3/324 (0%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+PVLL +V+A L PAPGK+ILD TFGAGGYS +    G+ VIALDRDP A++ GQ  + 
Sbjct: 19  HIPVLLAEVLAALAPAPGKLILDGTFGAGGYSSAILAAGAEVIALDRDPTAIAAGQAMVA 78

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
            +  +F L  + FS L D+ P  G+DGVV D+GVSSMQID  +RGFSFQK+GPLDMRMS 
Sbjct: 79  AHGGRFKLVHSQFSHLADHAPQGGLDGVVLDIGVSSMQIDEAERGFSFQKNGPLDMRMSA 138

Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199
            G+SA+DVVN+A V DL RI   LGEE QA RIAHAI KRR   PF+TT+DL+ LI+   
Sbjct: 139 EGVSAADVVNRAKVADLIRIFHFLGEESQAPRIAHAIEKRRAEKPFETTRDLAGLIELVT 198

Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259
                ++IHPATR FQALRIFVN+E+ ELAQ L +AE ALK GG L+ V+FHSLEDR+VK
Sbjct: 199 PRKMKDKIHPATRVFQALRIFVNDELGELAQALFAAEAALKPGGRLVAVTFHSLEDRIVK 258

Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319
           KFF+ R+GK    RH+  ++   A F +I K +V  ++ +   N R+RSAKLRAG+RT E
Sbjct: 259 KFFSDRAGKASGSRHLPVAHERAATFAAIGKPMVSASEAEAEINPRARSAKLRAGLRT-E 317

Query: 320 RSIE--DDSFVHLPRLPTLSQFRG 341
            + E  D S    P L +L +  G
Sbjct: 318 AAAEAADMSLFGFPNLASLGKLGG 341


>gi|294852766|ref|ZP_06793439.1| methylase MraW [Brucella sp. NVSL 07-0026]
 gi|294821355|gb|EFG38354.1| methylase MraW [Brucella sp. NVSL 07-0026]
          Length = 346

 Score =  323 bits (829), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 167/326 (51%), Positives = 216/326 (66%), Gaps = 6/326 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           HVPVL+ +VI  L PAPG VI+D TFGAGGY+R   + G++VIA+DRDP A+  G+   +
Sbjct: 18  HVPVLIAEVIDALKPAPGAVIVDGTFGAGGYTRRILETGADVIAIDRDPTAIEAGRAMEK 77

Query: 80  DYKEQFSLFQATFSQLQDYVP-----DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++  + +L ++ FS L + V       K VDGVV D+GVSSMQID  +RGFSFQK GPLD
Sbjct: 78  EFPGRLNLVESRFSALDEAVARMSGAGKKVDGVVLDIGVSSMQIDEAERGFSFQKDGPLD 137

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRMS  G SA+D VN+    DL RI   LGEE+ A RIA  I KRR   PF  T DL++ 
Sbjct: 138 MRMSSRGPSAADAVNRLKTGDLARIFNFLGEERHAGRIARMIEKRRAPKPFTRTLDLANA 197

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           I+  V  +  +RIH ATR FQALR++VN+E+ ELA+ L +AE+ LK GG L+VV+FHSLE
Sbjct: 198 IETLVGRNPKDRIHSATRVFQALRVYVNDELGELARALLAAERILKPGGRLVVVTFHSLE 257

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           DR+VK+FFA R+G     RHM  ++     F    K  V PT E+   N R+RSAKLRAG
Sbjct: 258 DRMVKRFFADRAGGSAGSRHMPETHMRLPSFTPAVKGAVGPTPEEEERNPRARSAKLRAG 317

Query: 315 MRTVERSIEDD-SFVHLPRLPTLSQF 339
           +RT    +EDD S   LP+LP  ++ 
Sbjct: 318 IRTENPPLEDDLSLFGLPKLPETNEL 343


>gi|306844338|ref|ZP_07476930.1| S-adenosyl-methyltransferase MraW [Brucella sp. BO1]
 gi|306275410|gb|EFM57151.1| S-adenosyl-methyltransferase MraW [Brucella sp. BO1]
          Length = 346

 Score =  322 bits (826), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 165/326 (50%), Positives = 217/326 (66%), Gaps = 6/326 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           HVPVL+ +VI  L PAPG VI+D TFGAGGY+R   + G++VIA+D DP A+  G+   +
Sbjct: 18  HVPVLIAEVIDALKPAPGAVIVDGTFGAGGYTRRILETGADVIAIDCDPTAIEAGRAMEK 77

Query: 80  DYKEQFSLFQATFSQLQDYVP-----DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++  + +L ++ FS L + V       K VDGVV D+GVSSMQID  +RGFSFQK GPLD
Sbjct: 78  EFPGRLNLVESRFSALDEAVARMSGAGKKVDGVVLDIGVSSMQIDEAERGFSFQKDGPLD 137

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRMS  G SA+D VN+    DL RI   LGEE+ A RIA  I KRR + PF  T DL++ 
Sbjct: 138 MRMSSRGPSAADAVNRLKTGDLARIFNFLGEERHAGRIARMIEKRRAAKPFTRTLDLANA 197

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           I+  V  +  +RIHPATR FQALR++VN+E+ ELA+ L +AE+ +K GG L++V+FHSLE
Sbjct: 198 IETLVGRNPKDRIHPATRVFQALRVYVNDELGELARALLAAERIIKPGGRLVIVTFHSLE 257

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           DR+VK+FFA R+G     RHM  ++     F    K  V PT E+   N R+RSAKLRAG
Sbjct: 258 DRMVKRFFADRAGGSAGSRHMPETHMRLPSFTPAVKGAVGPTPEEEERNPRARSAKLRAG 317

Query: 315 MRTVERSIEDD-SFVHLPRLPTLSQF 339
           +RT    +EDD S   LP+LP  ++ 
Sbjct: 318 IRTENPPLEDDLSLFGLPKLPETNEL 343


>gi|239832317|ref|ZP_04680646.1| S-adenosyl-methyltransferase MraW [Ochrobactrum intermedium LMG
           3301]
 gi|239824584|gb|EEQ96152.1| S-adenosyl-methyltransferase MraW [Ochrobactrum intermedium LMG
           3301]
          Length = 347

 Score =  321 bits (822), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 168/326 (51%), Positives = 217/326 (66%), Gaps = 6/326 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           HVPVL+ +VI  L P  G VI+D TFGAGGY+R   + G++VIA+DRDP A+  G+   +
Sbjct: 19  HVPVLIAEVIDALKPVAGAVIVDGTFGAGGYTRRILEAGADVIAIDRDPTAIEAGRVMEK 78

Query: 80  DYKEQFSLFQATFSQLQDYVPD-KG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
            +  + +L ++ FS L D V   KG    VDGVV D+GVSSMQID  +RGFSFQK GPLD
Sbjct: 79  QFPGRLNLVESRFSALDDAVSTVKGAGSKVDGVVLDIGVSSMQIDEAERGFSFQKDGPLD 138

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRMS  G SA+DVVN+    DL RI   LGEE+ A RIA  I KRR + PF  T DL++ 
Sbjct: 139 MRMSKKGPSAADVVNRLKTGDLARIFNFLGEERHAGRIARMIDKRRTAQPFTRTLDLANA 198

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           I+  V  +  +RIHPATR FQALR++VN+E+ ELA+ L +AE+ LK GG L+VV+FHSLE
Sbjct: 199 IETLVGRNPKDRIHPATRVFQALRVYVNDELGELARALLAAERILKPGGRLVVVTFHSLE 258

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           DR+VK++FA R+G     RH+  ++   A F    K  V PT E+   N R+RSAKLRAG
Sbjct: 259 DRMVKRYFADRAGGSAGSRHLPETHVRLASFTPAIKGAVGPTAEEEERNPRARSAKLRAG 318

Query: 315 MRTVERSIEDD-SFVHLPRLPTLSQF 339
            RT    +EDD S   LP+LP  ++ 
Sbjct: 319 TRTENPPLEDDLSLFGLPKLPETNEL 344


>gi|153009066|ref|YP_001370281.1| S-adenosyl-methyltransferase MraW [Ochrobactrum anthropi ATCC
           49188]
 gi|262824676|sp|A6WZP8|RSMH_OCHA4 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|151560954|gb|ABS14452.1| S-adenosyl-methyltransferase MraW [Ochrobactrum anthropi ATCC
           49188]
          Length = 347

 Score =  318 bits (816), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 166/326 (50%), Positives = 216/326 (66%), Gaps = 6/326 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           HVPVL+ +VI  L P  G VI+D TFGAGGY+R   + G++VIA+DRDP A+  G+   +
Sbjct: 19  HVPVLIAEVIDALKPVSGAVIVDGTFGAGGYTRRILEAGADVIAIDRDPTAIEAGRAMEK 78

Query: 80  DYKEQFSLFQATFSQLQDYVPD-KG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
            +  +  L ++ FS L + V   KG    VDGVV D+GVSSMQID  +RGFSFQK GPLD
Sbjct: 79  QFPGRLDLVESRFSALDEAVSKVKGAGSKVDGVVLDIGVSSMQIDEAERGFSFQKDGPLD 138

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRMS  G SA+DVVN+    DL RI   LGEE+ A RIA  I KRR + PF  T DL++ 
Sbjct: 139 MRMSKKGPSAADVVNRLKTGDLARIFNFLGEERHAGRIARMIDKRRTAQPFTRTLDLANA 198

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           I+  V  +  +RIHPATR FQALR++VN+E+ ELA+ L +AE+ LK GG L+VV+FHSLE
Sbjct: 199 IETLVGRNPKDRIHPATRVFQALRVYVNDELGELARALLAAERILKPGGRLVVVTFHSLE 258

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           DR+VK++FA R+G     RH+  ++     F    K  V PT E+   N R+RSAKLRAG
Sbjct: 259 DRMVKRYFADRAGGSAGSRHLPETHVRLPSFTPAVKGAVGPTAEEEERNPRARSAKLRAG 318

Query: 315 MRTVERSIEDD-SFVHLPRLPTLSQF 339
           +RT    +EDD S   LP+LP  ++ 
Sbjct: 319 IRTENPPLEDDLSLFGLPKLPETNEL 344


>gi|163761063|ref|ZP_02168140.1| S-adenosyl-methyltransferase protein [Hoeflea phototrophica DFL-43]
 gi|162281614|gb|EDQ31908.1| S-adenosyl-methyltransferase protein [Hoeflea phototrophica DFL-43]
          Length = 338

 Score =  318 bits (815), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 158/298 (53%), Positives = 206/298 (69%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+PVLL +V+A L  AP ++I+D TFGAGGY+ +  + G++VI  DRDP A++ G E   
Sbjct: 19  HIPVLLREVLAALEAAPSQLIVDGTFGAGGYTAAILEAGASVIGFDRDPEAIANGAEMAA 78

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
               +  L  A FS L ++V +  +DG+V D+GVSSMQID  +RGFSF + GPLDMRM+ 
Sbjct: 79  ASGGRLKLIHAQFSHLLEHVEEASLDGLVLDIGVSSMQIDEAERGFSFMRDGPLDMRMAQ 138

Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199
           +GISA+DVVN+A   DLTRI GILGEE+ A RIA AI   R   PF TT+ L+ LI+K  
Sbjct: 139 AGISAADVVNRAKASDLTRIFGILGEERHAGRIARAIEAERAKHPFSTTRQLAGLIEKVS 198

Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259
                ++IHPATR FQALR +VN+E+ ELA  L +AEKALK GG L+VV+FHSLEDR+VK
Sbjct: 199 PRRPQDKIHPATRVFQALRTYVNDELGELATALFAAEKALKPGGRLVVVTFHSLEDRIVK 258

Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           +FF  RSGK    RH+       A F +I K+ VV  +E+   N R+RSAKLRAG+R+
Sbjct: 259 RFFQDRSGKASGSRHLPAVQERKATFTAIGKQPVVAGEEECEANPRARSAKLRAGLRS 316


>gi|163868721|ref|YP_001609933.1| S-adenosyl-methyltransferase MraW [Bartonella tribocorum CIP
           105476]
 gi|263445963|sp|A9IWB6|RSMH_BART1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|161018380|emb|CAK01938.1| S-adenosyl-methyltransferase [Bartonella tribocorum CIP 105476]
          Length = 332

 Score =  318 bits (814), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 169/322 (52%), Positives = 217/322 (67%), Gaps = 3/322 (0%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+PVLL+ V+A L P  G  ++D TFGAGGY+R+  K G+ VIALDRDP A++ GQ  + 
Sbjct: 11  HIPVLLQPVLAGLMPLVGAKVIDGTFGAGGYTRALLKAGAQVIALDRDPHAIAAGQSLVD 70

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
           ++  +  L    FSQL D V ++ VD V+ D+GVSSMQ+D  +RGFSFQK GPLDMRM+ 
Sbjct: 71  EFFPRLRLVHMEFSQL-DRVVEEKVDAVILDIGVSSMQLDEAERGFSFQKDGPLDMRMAQ 129

Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199
           +G SASDVVN    KDL RI  ILGEE+ A RIA  I KRR   PF  T DL+  I+  V
Sbjct: 130 TGFSASDVVNHLKAKDLARIFKILGEERYAGRIARMIEKRRAVQPFLRTGDLAYAIEALV 189

Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259
                +RIHPATR FQALRI+VN+EI ELA+GL +AE+ LKAGG L VVSFHSLEDR+VK
Sbjct: 190 GRKPGDRIHPATRVFQALRIYVNDEIGELARGLFAAERVLKAGGRLGVVSFHSLEDRMVK 249

Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319
           +FF SRSG+ M  RH+      PA F  + K  +   +E++  N RSRSA+LR G+RT  
Sbjct: 250 RFFVSRSGEGMRSRHLPEIKHSPATFFPLFKGGITANKEELQQNPRSRSARLRMGVRTNA 309

Query: 320 RSIEDDSFVHLPRLPTLSQFRG 341
            ++ +D  + L  L  ++ F G
Sbjct: 310 EALAED--MKLFGLAEIASFEG 329


>gi|118590900|ref|ZP_01548300.1| S-adenosyl-methyltransferase MraW [Stappia aggregata IAM 12614]
 gi|118436422|gb|EAV43063.1| S-adenosyl-methyltransferase MraW [Stappia aggregata IAM 12614]
          Length = 346

 Score =  316 bits (809), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 163/327 (49%), Positives = 225/327 (68%), Gaps = 7/327 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           HVPVLL++V+  L P PG VI+D TFGAGGYSR+  ++G+ V+ +DRDP A++ GQE ++
Sbjct: 19  HVPVLLKEVLEWLAPQPGDVIVDGTFGAGGYSRAILELGARVVGIDRDPDAIAGGQELVK 78

Query: 80  DYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
             + +  L    F+ L+ +      +GVDGVV DLGVSSMQ+D  +RGFSF + GPLDMR
Sbjct: 79  ASEGRLMLVPGQFADLETHARSCGFEGVDGVVLDLGVSSMQLDEAERGFSFLRDGPLDMR 138

Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
           M  +G SA+DVVN+  VKDL R++G+LGEEK+A+ +AHAI K R+  PF  T +L++LI+
Sbjct: 139 MEQAGPSAADVVNELPVKDLIRVIGLLGEEKRATTVAHAIDKARKEKPFTRTLELANLIE 198

Query: 197 KTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           K +  S K  +IHPATR+FQALRI+VN E+ + A+ L +AE+ LK GG L++VSFHSLED
Sbjct: 199 KVLGRSPKKAQIHPATRTFQALRIYVNGELHQAAEALGAAERILKPGGRLVLVSFHSLED 258

Query: 256 RLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           R+VK+FF  R+  +    RHM   +  PA F+ +T+K V     +   N R+RSAKLRAG
Sbjct: 259 RIVKRFFQDRTRTRGGGSRHMPEEDVPPATFELLTRKAVEAASAETDINPRARSAKLRAG 318

Query: 315 MRTVERSIEDDSFVHLPRLPTLSQFRG 341
            RT   + E D  +H   +P L+ F G
Sbjct: 319 RRTEAEARELD--IHQAGVPRLAAFHG 343


>gi|307944902|ref|ZP_07660239.1| S-adenosyl-methyltransferase MraW [Roseibium sp. TrichSKD4]
 gi|307771826|gb|EFO31050.1| S-adenosyl-methyltransferase MraW [Roseibium sp. TrichSKD4]
          Length = 346

 Score =  315 bits (806), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 164/329 (49%), Positives = 223/329 (67%), Gaps = 11/329 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           HVPVLL+ V+  L P PG+VI+D TFGAGGYSR+  + G++VI +DRDP A++ GQ  + 
Sbjct: 19  HVPVLLDLVLEYLAPNPGEVIIDGTFGAGGYSRALLERGASVIGVDRDPDAIAGGQPLVE 78

Query: 80  DYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
               + +L    F+ L+ +    G   VDGVV DLGVSSMQ+D  +RGFSF + GPLDMR
Sbjct: 79  ASDGRLTLVPGCFADLETHARSLGHDAVDGVVLDLGVSSMQLDEAERGFSFLRDGPLDMR 138

Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
           M   G SA+DVVN+ +V+DL RI+G+LGEEK+A+ +AHAI   R+  PF  T +L++L++
Sbjct: 139 MEQEGPSAADVVNELSVRDLIRIIGVLGEEKRATTVAHAIDNARKEGPFTRTGELAALVE 198

Query: 197 KTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           K +  S K  +IHPATR+FQALRI+VN E+ + AQ L +AE  LK GG L+VVSFHSLED
Sbjct: 199 KVLGRSPKKAQIHPATRTFQALRIYVNGELHQAAQALGAAENILKPGGRLVVVSFHSLED 258

Query: 256 RLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           R+VK+F A RS       RHM  +   P  F+ +T+K +  T  ++A N R+RSAKLRAG
Sbjct: 259 RIVKRFLADRSKTHAGGSRHMPETEVEPPTFELLTRKAIDGTDAEIAGNPRARSAKLRAG 318

Query: 315 MRTVE--RSIEDDSFVHLPRLPTLSQFRG 341
            RT    RS++    +H   +P L+ F+G
Sbjct: 319 RRTTNPARSLD----IHAAGVPRLADFKG 343


>gi|306843215|ref|ZP_07475826.1| S-adenosyl-methyltransferase MraW [Brucella sp. BO2]
 gi|306286580|gb|EFM58157.1| S-adenosyl-methyltransferase MraW [Brucella sp. BO2]
          Length = 321

 Score =  314 bits (804), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 161/318 (50%), Positives = 211/318 (66%), Gaps = 6/318 (1%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSL 87
           +I  L PAPG VI+D TFGAGGY+R   + G++VIA+DRDP A+  G+   +++  + +L
Sbjct: 1   MIDALKPAPGAVIVDGTFGAGGYTRRILETGADVIAIDRDPTAIEAGRAMEKEFPGRLNL 60

Query: 88  FQATFSQLQDYVP-----DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI 142
            ++ FS L + V       K VDGVV D+GVSSMQID  +RGFSFQK GPLDMRMS  G 
Sbjct: 61  VESRFSALDEAVARMSGAGKKVDGVVLDIGVSSMQIDEAERGFSFQKDGPLDMRMSSRGP 120

Query: 143 SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS 202
           SA+D VN+    DL RI   LGEE+ A RIA  I KRR + PF  T DL++ I+  V  +
Sbjct: 121 SAADAVNRLKTGDLARIFNFLGEERHAGRIARMIEKRRAAKPFTRTLDLANAIETLVGRN 180

Query: 203 KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF 262
             +RIHPATR FQALR++VN+E+ ELA+ L +AE+ +K GG L+VV+FHSLEDR+VK+FF
Sbjct: 181 PKDRIHPATRVFQALRVYVNDELGELARALLAAERIIKPGGRLVVVTFHSLEDRMVKRFF 240

Query: 263 ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSI 322
           A R+G     RHM  ++     F    K  V PT E+   N R+RSAKLRAG+RT    +
Sbjct: 241 ADRAGGSAGSRHMPETHMRLPSFTPAVKGAVGPTPEEEERNPRARSAKLRAGIRTENPPL 300

Query: 323 EDD-SFVHLPRLPTLSQF 339
           EDD S   LP+LP  ++ 
Sbjct: 301 EDDLSLFGLPKLPETNEL 318


>gi|240850900|ref|YP_002972300.1| S-adenosyl-methyltransferase MraW [Bartonella grahamii as4aup]
 gi|263445977|sp|C6AEK6|RSMH_BARGA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|240268023|gb|ACS51611.1| S-adenosyl-methyltransferase MraW [Bartonella grahamii as4aup]
          Length = 332

 Score =  307 bits (786), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 163/322 (50%), Positives = 215/322 (66%), Gaps = 3/322 (0%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+PVLL+ V+A L P  G  ++D TFGAGGY+ +  K G+ VIALDRDP A+S GQ  + 
Sbjct: 11  HIPVLLQPVLAGLMPLVGAKVIDGTFGAGGYTCALLKAGAEVIALDRDPHAISAGQSLVE 70

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
           ++  +  L Q  FSQL D V ++ VD V+ D+GVSSMQ+D  +RGFSFQK GPLDMRM+ 
Sbjct: 71  EFFPRLRLVQMEFSQL-DRVVEEKVDAVILDIGVSSMQLDEAERGFSFQKDGPLDMRMAQ 129

Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199
           +G +A DVVN    +DL RI  ILGEE+ A RIA  I KRR   PF  T DL+  I+  +
Sbjct: 130 TGFTAGDVVNHLKARDLARIFKILGEERYAGRIARMIEKRRVVQPFLRTGDLAYAIEALI 189

Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259
                +RIHPATR FQALRI+VN+EI ELA+GL +AE+ LK GG L VVSFHSLEDR+VK
Sbjct: 190 GRKPGDRIHPATRVFQALRIYVNDEIGELARGLFAAERILKPGGRLGVVSFHSLEDRMVK 249

Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319
           +FF+ RSG+ M  R++      PA F  + K  +  ++E++  N RSRSA+LR G+RT  
Sbjct: 250 RFFSFRSGECMRSRYLPEIKTAPATFFPLFKGGITASEEELQQNPRSRSARLRIGVRTEA 309

Query: 320 RSIEDDSFVHLPRLPTLSQFRG 341
            ++  D  + L  L  ++ F G
Sbjct: 310 EALAAD--MKLFGLAEIASFEG 329


>gi|254500690|ref|ZP_05112841.1| S-adenosyl-methyltransferase MraW [Labrenzia alexandrii DFL-11]
 gi|222436761|gb|EEE43440.1| S-adenosyl-methyltransferase MraW [Labrenzia alexandrii DFL-11]
          Length = 346

 Score =  307 bits (786), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 161/327 (49%), Positives = 219/327 (66%), Gaps = 7/327 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           HVPVLL +V+  L+P PG+V++D TFGAGGYSR   +  + V+ +DRDP A++ GQE + 
Sbjct: 19  HVPVLLNEVLEWLDPQPGEVMVDGTFGAGGYSRKLLERDATVVGIDRDPDAIAGGQELVT 78

Query: 80  DYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
               +  L    F+ L+ +  +    GVDGVV DLGVSSMQ+D  +RGFSF + GPLDMR
Sbjct: 79  QSDGRLILVPGQFADLETHARESGFDGVDGVVLDLGVSSMQLDQAERGFSFLRDGPLDMR 138

Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
           M  +G SA+DVVN+  V+DL RI+G+LGEEK+A  +AHAI   R+  PF  T +L++LI+
Sbjct: 139 MEQAGPSAADVVNELPVRDLIRIIGVLGEEKRAPSVAHAIDNARKEKPFSRTLELANLIE 198

Query: 197 KTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           K +  S K  +IHPATR+FQALRI+VN E+ + AQ L +AE+ LK GG L++VSFHSLED
Sbjct: 199 KVLGRSPKKAQIHPATRTFQALRIYVNGELHQAAQALGAAERILKPGGRLVLVSFHSLED 258

Query: 256 RLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           R+VK+FF  R+  +    RHM      PA F+ +T+K V     +   N R+RSAKLRAG
Sbjct: 259 RIVKRFFQDRTKTRGGGSRHMPEEEVPPATFEILTRKAVEARDMETDANPRARSAKLRAG 318

Query: 315 MRTVERSIEDDSFVHLPRLPTLSQFRG 341
            RT   + E D  +H+  +P L+ F G
Sbjct: 319 RRTEAPARELD--IHVAGVPRLAAFHG 343


>gi|90418202|ref|ZP_01226114.1| putative S-adenosyl-methyltransferase mraW [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90337874|gb|EAS51525.1| putative S-adenosyl-methyltransferase mraW [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 348

 Score =  305 bits (781), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 159/327 (48%), Positives = 212/327 (64%), Gaps = 9/327 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+PVLL +V+  L P PG+VI+D TFGAGGY+R+    G++VIA+DRDP A++  +    
Sbjct: 19  HIPVLLAEVLEALAPKPGEVIVDGTFGAGGYTRAILDAGADVIAIDRDPAAIATARGLAE 78

Query: 80  DYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            Y  + +  +  F  LQ  V  +       VDG+V D+GVSSMQ+D  +RGFSFQK GPL
Sbjct: 79  GYDGRLAPVEGRFGDLQRIVETQAEAAGGRVDGIVLDVGVSSMQLDEAERGFSFQKDGPL 138

Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           DMRMS +G SA+DVVN+  V DL R++GILGEEKQA R+A AI  RR   PF  T DL+ 
Sbjct: 139 DMRMSGAGPSAADVVNRLKVGDLLRVIGILGEEKQAGRVARAIEARRLEQPFTRTLDLAG 198

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           +I K V     ++I PATRSFQ LRIFVN+E+ ELA+ L +AE+ LK GG L++VSFHSL
Sbjct: 199 VIGKVVGRGPKDKIDPATRSFQGLRIFVNDELGELARALVAAERVLKPGGRLVIVSFHSL 258

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK-KVVVPTQEDVAFNRRSRSAKLR 312
           EDR+VK+F   RS      RH+   +  PA    + + + V  T  +   N R+RSAKLR
Sbjct: 259 EDRIVKRFLRDRSSPPSGSRHL--PDMAPATQTFVARNRAVGATDAEAERNPRARSAKLR 316

Query: 313 AGMRTVERSIEDDSFVHLPRLPTLSQF 339
           AG+RT E + +D   +    LP+L+  
Sbjct: 317 AGIRTAEPARQDADELGFAGLPSLADL 343


>gi|319408832|emb|CBI82489.1| S-adenosyl-methyltransferase [Bartonella schoenbuchensis R1]
          Length = 356

 Score =  304 bits (779), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 166/327 (50%), Positives = 221/327 (67%), Gaps = 6/327 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+PVLL+ V+A L P  G  ++D TFGAGGY+R+    G++VIALDRDP A+  GQ  + 
Sbjct: 28  HIPVLLQPVLAALVPLAGAKVIDGTFGAGGYTRALLDAGADVIALDRDPHAIREGQLLVD 87

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
            +  +  L Q  FSQL D V ++ VD V+ D+GVSSMQ+D  +RGFSFQK GPLDMRM+ 
Sbjct: 88  QFFPRLRLVQMEFSQL-DCVVEEKVDAVILDIGVSSMQLDEAERGFSFQKDGPLDMRMAQ 146

Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199
           +G +ASDVVN   V +L+ +  +LGEE+ A RIA  I KRR+  PF  T DL++ I+  V
Sbjct: 147 TGFTASDVVNCLKVNELSHMFRVLGEERHAGRIARMIEKRRRIRPFLRTCDLANAIEVLV 206

Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259
                +RIHPATR FQALRI+VN+E+ EL +GL +AEK LKAGG L VVSFHSLEDR+VK
Sbjct: 207 GRKPGDRIHPATRVFQALRIYVNDELGELTRGLLAAEKVLKAGGRLGVVSFHSLEDRIVK 266

Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319
           KFF++RSG+    R++    + PA F  + K V    +E+V  N R+RSAKLR G+RT E
Sbjct: 267 KFFSARSGEGGRSRYLPEIKSSPATFLPLFKGVKTANEEEVQKNPRARSAKLRVGIRTQE 326

Query: 320 ---RSIED--DSFVHLPRLPTLSQFRG 341
              R+ ED   + + L  L  ++ F+G
Sbjct: 327 DVIRTQEDVIKADMELFGLAEITSFKG 353


>gi|49474464|ref|YP_032506.1| S-adenosyl-methyltransferase MraW [Bartonella quintana str.
           Toulouse]
 gi|54036185|sp|Q6G116|RSMH_BARQU RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|49239968|emb|CAF26373.1| hypothetical protein BQ08940 [Bartonella quintana str. Toulouse]
          Length = 332

 Score =  303 bits (775), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 164/322 (50%), Positives = 211/322 (65%), Gaps = 3/322 (0%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+PVLL+ V+A L P  G  ++D TFGAGGY+R+    G+ VIALDRDP AV  GQ  + 
Sbjct: 11  HIPVLLQPVLAGLMPLIGAKVIDGTFGAGGYTRALLNAGAQVIALDRDPHAVREGQSLVD 70

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
           ++  +  L Q  FSQL D V ++ VD V+ D+GVSSMQ D  +RGFSFQK GPLDMRM+ 
Sbjct: 71  EFFPRLRLMQMEFSQL-DRVVEEKVDAVILDIGVSSMQFDEAERGFSFQKDGPLDMRMAQ 129

Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199
           +G +A DVVN+    DL RI  ILGEE+ A RIA  I KRR   PF  T DL+  I+  V
Sbjct: 130 TGFTAGDVVNRLKKDDLARIFKILGEERYAGRIARMIEKRRCVQPFLRTGDLAHAIEALV 189

Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259
                +RIHPATR FQALRI+VN+EI ELA+GL +AE  LK GG L VVSFHSLEDR+VK
Sbjct: 190 GRKPGDRIHPATRVFQALRIYVNDEIGELARGLFAAESVLKPGGRLGVVSFHSLEDRMVK 249

Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319
           +FF++RSG     R++    A PA F S+ K  +  ++E++  N RSRSA+LR G+RT  
Sbjct: 250 RFFSARSGGCRRSRYLPEIEAVPATFFSLFKGAITASKEELQQNPRSRSARLRIGIRTEA 309

Query: 320 RSIEDDSFVHLPRLPTLSQFRG 341
             +  D  + L     ++ F G
Sbjct: 310 ECLAKD--IKLFDFAEIASFEG 329


>gi|319406014|emb|CBI79645.1| S-adenosyl-methyltransferase [Bartonella sp. AR 15-3]
          Length = 332

 Score =  303 bits (775), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 164/322 (50%), Positives = 211/322 (65%), Gaps = 3/322 (0%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+PVLL+ V+A L P  G  ++D TFGAGGYSR+    G+ VIALDRDP AV  GQ  + 
Sbjct: 11  HIPVLLQSVLAGLAPLAGAKVIDGTFGAGGYSRALLNAGAEVIALDRDPQAVREGQALVD 70

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
            +  +  L QA FSQL D++ +  VD V+ D+GVSSMQ+D  +RGFSFQK GPLDMRM+ 
Sbjct: 71  QFFPRLRLVQAEFSQL-DHIVEGLVDAVILDIGVSSMQLDEAERGFSFQKDGPLDMRMAQ 129

Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199
           +G +A+DVVN   V DL ++   LGEE+ A RIA  I KRR   PF  T DL+  I+  +
Sbjct: 130 TGFTAADVVNYLKVDDLAQLFKTLGEERYAVRIARMIEKRRCIRPFLRTIDLAHAIEALI 189

Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259
                N IHPATR FQALRI+VNNE+ ELA  L + E+ LKAGG L VVSFHSLEDR+VK
Sbjct: 190 GRKPGNHIHPATRVFQALRIYVNNELNELACALFAVERVLKAGGRLAVVSFHSLEDRMVK 249

Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319
           KF ++RSG     R++    + PA F  + K V   TQE++  N R+RSA+LR G+RT E
Sbjct: 250 KFLSARSGHKKGSRYLPEIKSVPATFIPLYKGVKTATQEELQKNPRARSARLRIGVRTQE 309

Query: 320 RSIEDDSFVHLPRLPTLSQFRG 341
            +I  D  + L  L  ++ F G
Sbjct: 310 AAIAAD--MKLFGLAEIAHFEG 329


>gi|319899165|ref|YP_004159258.1| S-adenosyl-methyltransferase [Bartonella clarridgeiae 73]
 gi|319403129|emb|CBI76687.1| S-adenosyl-methyltransferase [Bartonella clarridgeiae 73]
          Length = 346

 Score =  302 bits (773), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 162/322 (50%), Positives = 212/322 (65%), Gaps = 3/322 (0%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+PVLL+ V+A + P  G  ++D TFGAGGYSR+    G+ VIALDRDP A+  GQ  + 
Sbjct: 25  HIPVLLQSVLAGIAPLAGARVIDGTFGAGGYSRALLNAGAEVIALDRDPLAIREGQALVD 84

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
            +  +  L QA FSQL D + +  VD V+ D+GVSSMQ+D  +RGFSFQK GPLDMRM+ 
Sbjct: 85  QFFPRLHLIQAKFSQL-DRIVEGEVDAVILDIGVSSMQLDEAERGFSFQKDGPLDMRMAQ 143

Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199
           +G +A+DVVN   V DL ++   LGEE+ A RIA  I KRR   PF  T DL+  I+  +
Sbjct: 144 TGFTAADVVNYLKVDDLAQLFKTLGEERYAGRIARMIDKRRYVRPFLRTIDLAHAIETLI 203

Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259
                + IHPATR FQALRI+VNNE+ ELA GL +AE+ LKA G L VVSFHSLEDR+VK
Sbjct: 204 GRKPGDHIHPATRVFQALRIYVNNELGELACGLFAAERVLKAEGRLAVVSFHSLEDRMVK 263

Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319
           KF ++RSG     R++    + PA F  + K V   TQE++  N R+RSA+LR G+RT E
Sbjct: 264 KFLSARSGYKKGSRYLPEIKSVPATFVPLFKGVKTATQEELQQNPRARSARLRIGVRTQE 323

Query: 320 RSIEDDSFVHLPRLPTLSQFRG 341
            +I  D  + L  L  +++F G
Sbjct: 324 AAIAAD--MKLFGLAEIARFEG 343


>gi|319407511|emb|CBI81159.1| S-adenosyl-methyltransferase [Bartonella sp. 1-1C]
          Length = 349

 Score =  301 bits (770), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 159/306 (51%), Positives = 204/306 (66%), Gaps = 1/306 (0%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+PVLL+ V+A L P  G  ++D TFGAGGYS +    G+ VIALDRDP A+  GQ  + 
Sbjct: 28  HIPVLLQSVLAELAPLAGAKVIDGTFGAGGYSCALLNAGAEVIALDRDPHAIREGQALVD 87

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
            +  +  L QA FSQL D++ ++ VD V+ D+GVSSMQ+D  +RGFSFQK GPLDMRM  
Sbjct: 88  QFFPRLRLVQAEFSQL-DHIVEEKVDAVILDIGVSSMQLDEPERGFSFQKDGPLDMRMGQ 146

Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199
            G +A+DVVN     DL ++    GEE+ A RIA  I KRR   PF  T DL+  I+  +
Sbjct: 147 IGFTAADVVNYLRADDLAQLFKTFGEERYAVRIARMIEKRRCIRPFLRTIDLAHAIESLI 206

Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259
                + IHPATR FQALRI+VNNE+ ELA GL +AE+ LKAGG L VVSFHSLEDR+VK
Sbjct: 207 GRKLGDHIHPATRVFQALRIYVNNELGELACGLFAAERVLKAGGRLAVVSFHSLEDRMVK 266

Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319
           KFF++RSG     R++    + PA F  + K V  PTQE++  N R+RSA+LR G+RT E
Sbjct: 267 KFFSARSGHKKGSRYLPEIKSAPATFIPLFKGVKTPTQEELQHNPRARSARLRMGVRTQE 326

Query: 320 RSIEDD 325
            +I  D
Sbjct: 327 VAIAAD 332


>gi|121602081|ref|YP_989236.1| S-adenosyl-methyltransferase MraW [Bartonella bacilliformis KC583]
 gi|263445982|sp|A1UTD3|RSMH_BARBK RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|120614258|gb|ABM44859.1| S-adenosyl-methyltransferase MraW [Bartonella bacilliformis KC583]
          Length = 331

 Score =  300 bits (769), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 157/306 (51%), Positives = 209/306 (68%), Gaps = 1/306 (0%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+PVLLE V+A L P  G  ++D TFGAGGY+R+    G+NV ALDRDP A+  G+  + 
Sbjct: 11  HIPVLLEPVLAGLAPLSGATVIDGTFGAGGYTRALLNAGANVTALDRDPHAIREGKPLVD 70

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
            +  +  L Q  FSQL D V ++ VD V+ D+GVSSMQ+D  +RGFSFQK GPLDMRM+ 
Sbjct: 71  QFFPRLRLVQTEFSQL-DRVIEEKVDAVILDIGVSSMQLDEAERGFSFQKDGPLDMRMAQ 129

Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199
           +G+SASDVVN   + DL +I  ILGEE+ +SRIA  I KRR+  PF  T+DL+  I+  +
Sbjct: 130 TGLSASDVVNHLKIDDLIQIFRILGEERHSSRIAKMIEKRRRIRPFLRTRDLAHEIEVLI 189

Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259
                +RIHPATR FQALRI+VN+E+ EL +GL +AE+ LKAGG L VVSFHSLEDR+VK
Sbjct: 190 GRKPGDRIHPATRVFQALRIYVNDELNELTRGLFAAERVLKAGGRLGVVSFHSLEDRIVK 249

Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319
           KFF+  SG     R++    + PA F  + K     ++E++  N R+RSA+LR G+RT  
Sbjct: 250 KFFSFCSGNRKGSRYLPEVESAPATFFPLFKGGKTASEEELQKNPRARSARLRIGIRTQV 309

Query: 320 RSIEDD 325
            ++E D
Sbjct: 310 DAMEAD 315


>gi|319404518|emb|CBI78123.1| S-adenosyl-methyltransferase [Bartonella rochalimae ATCC BAA-1498]
          Length = 349

 Score =  300 bits (769), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 158/306 (51%), Positives = 204/306 (66%), Gaps = 1/306 (0%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+PVLL+ V+A L P  G  ++D TFGAGGYS +    G+ VIALDRDP A+  GQ  + 
Sbjct: 28  HIPVLLQSVLAELAPLAGSKVIDGTFGAGGYSCALLNAGAEVIALDRDPHAIREGQALVD 87

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
            +  +  L QA FSQL D++ ++ VD V+ D+GVSSMQ+D  +RGFSFQK GPLDMRM  
Sbjct: 88  QFFPRLRLVQAEFSQL-DHIVEEKVDAVILDIGVSSMQLDEPERGFSFQKDGPLDMRMGQ 146

Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199
            G +A+DVVN     DL ++    GEE+ A RIA  I KRR   PF  T DL+  ++  +
Sbjct: 147 IGFTAADVVNYLKADDLAQLFKTFGEERYAVRIARMIEKRRCIRPFLRTIDLAHAVESLI 206

Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259
                + IHPATR FQALRI+VNNE+ ELA GL +AE+ LKAGG L VVSFHSLEDR+VK
Sbjct: 207 GRKPGDHIHPATRVFQALRIYVNNELAELACGLFAAERVLKAGGRLAVVSFHSLEDRMVK 266

Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319
           KFF++RSG     R++    + PA F  + K V  PTQE++  N R+RSA+LR G+RT E
Sbjct: 267 KFFSARSGHKKGSRYLPEIKSAPATFIPLFKGVKTPTQEELQQNPRARSARLRMGVRTQE 326

Query: 320 RSIEDD 325
            +I  D
Sbjct: 327 VAIAAD 332


>gi|110634365|ref|YP_674573.1| S-adenosyl-methyltransferase MraW [Mesorhizobium sp. BNC1]
 gi|123353547|sp|Q11GR7|RSMH_MESSB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|110285349|gb|ABG63408.1| S-adenosyl-methyltransferase MraW [Chelativorans sp. BNC1]
          Length = 339

 Score =  300 bits (767), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 151/315 (47%), Positives = 214/315 (67%), Gaps = 3/315 (0%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+PVLL +V+  L PA GK+ILD TFGAGGY+R+  + G++VIA+D+DP A++ G+   +
Sbjct: 16  HLPVLLAEVLEALEPARGKLILDGTFGAGGYTRALLEAGADVIAIDQDPDAIAGGKPLAQ 75

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
           ++  +  L +  FS++++ +  + +DG+V D+GVSSMQ+D  +RGFSF++ GPLDMRM  
Sbjct: 76  EFAPRLRLERGRFSEMEE-IAGEMLDGIVLDVGVSSMQLDQAERGFSFRREGPLDMRMGQ 134

Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199
            G SA+DVVN+    DL RI G+LGEE+ A RIA AI K R   PF+TT DL+ L+++ +
Sbjct: 135 EGTSAADVVNKFKAGDLARIFGLLGEERHAGRIARAIEKGRAEKPFRTTGDLAELVERVI 194

Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259
                ++IHPATR FQ LRIFVN+E+ ELA+ L +AE+ LK GG+L VV+FHSLEDR+VK
Sbjct: 195 GHRPTDKIHPATRVFQGLRIFVNDELGELARALFAAERLLKPGGILAVVTFHSLEDRIVK 254

Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319
           +F  +RSG     RH+    A   VF+   K  V P + + A N R+RSA LRA  RT  
Sbjct: 255 RFLQARSGPQAQSRHLPEKAAAQPVFEKPMKP-VSPGEAETAENPRARSAHLRAARRTAH 313

Query: 320 RS-IEDDSFVHLPRL 333
            + ++D     +P L
Sbjct: 314 PAGVQDFKLFGVPAL 328


>gi|49475863|ref|YP_033904.1| S-adenosyl-methyltransferase MraW [Bartonella henselae str.
           Houston-1]
 gi|54036186|sp|Q6G2P7|RSMH_BARHE RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|49238671|emb|CAF27917.1| hypothetical protein BH11320 [Bartonella henselae str. Houston-1]
          Length = 346

 Score =  298 bits (764), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 156/298 (52%), Positives = 204/298 (68%), Gaps = 1/298 (0%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+PVLL+ V+A L P  G  ++D TFGAGGY+R+    G+ VIALDRDP A+  GQ  + 
Sbjct: 25  HIPVLLQPVLAGLIPLVGAKVIDGTFGAGGYTRALLNAGAQVIALDRDPHAIREGQSLVD 84

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
           ++  +  L Q  FSQL D V ++ VD V+ D+GVSSMQ+D  +RGFSFQK GPLDMRM+ 
Sbjct: 85  EFFPRLRLVQGNFSQL-DCVVEEKVDAVILDIGVSSMQLDEAERGFSFQKDGPLDMRMAQ 143

Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199
           +G +A+DVVN+    +L RI  ILGEE+ A RIA  I KRR   PF  T DL+  I+  V
Sbjct: 144 TGFTAADVVNRLKSDELARIFKILGEERYARRIARMIEKRRCVQPFLRTGDLAHAIEVLV 203

Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259
                 RIHPATR FQALRI+VN+EI ELA+GL +AE+ LK GG L VVSFHSLEDR+VK
Sbjct: 204 GRKSGERIHPATRVFQALRIYVNDEIGELARGLFAAERVLKPGGRLGVVSFHSLEDRMVK 263

Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           +FF++RSG+ +  R++      PA F  + K  +   +E++  N RSRSA+LR G+RT
Sbjct: 264 RFFSARSGESVRSRYLPEIEMAPATFFPLFKGGITANKEELERNPRSRSARLRIGVRT 321


>gi|304392263|ref|ZP_07374205.1| S-adenosyl-methyltransferase MraW [Ahrensia sp. R2A130]
 gi|303296492|gb|EFL90850.1| S-adenosyl-methyltransferase MraW [Ahrensia sp. R2A130]
          Length = 394

 Score =  298 bits (762), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 159/323 (49%), Positives = 208/323 (64%), Gaps = 8/323 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+PV+LE+V+  L P  G  I+DATFGAGGYSR+    G+ VI +DRDP AV+  Q  + 
Sbjct: 64  HIPVMLEEVLRALRPLDGSTIVDATFGAGGYSRAMLGGGATVIGIDRDPDAVAAAQPMLA 123

Query: 80  DYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
           ++    +L    FSQL       G   VDGVV D+GVSSMQID  +RGFSF + GPLDMR
Sbjct: 124 EFDGSLTLHHGRFSQLDKICRSAGHETVDGVVADIGVSSMQIDQAERGFSFLRDGPLDMR 183

Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
           M  SG SA+DVVN     DLTR++GILGEE+QASR++  IV+ R   PF+TT  L+SL++
Sbjct: 184 MEQSGPSAADVVNLLPRNDLTRVIGILGEERQASRVSAQIVEDRAKRPFETTLQLASLVE 243

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
           K +     ++IHPATR+FQALRIFVN E+++LAQ L +AE+ L  GG L+VV+FHSLEDR
Sbjct: 244 KVLSRKAKDKIHPATRTFQALRIFVNGELDQLAQALLAAERVLVPGGRLVVVTFHSLEDR 303

Query: 257 LVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           LVK F   R+ +    RHM   +     F  I +  +  +  +   N R+RSAKLR  +R
Sbjct: 304 LVKIFLKDRAEQASGSRHMPVVDITTPTFNQIKRGAISASAAEAEINPRARSAKLRWAVR 363

Query: 317 T-----VERSIEDDSFVHLPRLP 334
           T     V  + +D S   LPRLP
Sbjct: 364 TEEPPRVNSNGDDLSIFGLPRLP 386


>gi|254476257|ref|ZP_05089643.1| S-adenosyl-methyltransferase MraW [Ruegeria sp. R11]
 gi|214030500|gb|EEB71335.1| S-adenosyl-methyltransferase MraW [Ruegeria sp. R11]
          Length = 330

 Score =  290 bits (742), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 160/331 (48%), Positives = 212/331 (64%), Gaps = 12/331 (3%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRD 67
           M++    + G HVPVLL  ++A + P  G+  LD TFGAGGYSR   + G++ VI +DRD
Sbjct: 1   MTTDRQTSSGPHVPVLLRPLLAAVAPVSGR-WLDGTFGAGGYSRGLLEAGADHVIGVDRD 59

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
           P A    Q+ + DY  + +  Q  FS++ +Y  D  +DGVV DLGVSSMQ+D  +RGFSF
Sbjct: 60  PLAFEMAQDWIGDYDGRLTFQQGVFSRMDEYAQD--LDGVVLDLGVSSMQLDMAERGFSF 117

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
            + GPLDMRMS  G SA+D+V + +   L  IL + GEE+ + RIA AIVK R  AP  T
Sbjct: 118 MRDGPLDMRMSQDGPSAADLVAELDEAALADILFMFGEERASRRIARAIVKARTEAPITT 177

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T  L+ +I+  +  SK  + HPATRSFQ LRI VN E EEL +GL +AE+ALK GGLL V
Sbjct: 178 TLQLAGIIESCLPRSKPGQSHPATRSFQGLRIAVNAEYEELFEGLLAAERALKPGGLLAV 237

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRS 306
           V+FHS+EDR+VK+FF  R+GK        P     P+ F  +T+K V P  E++A N RS
Sbjct: 238 VTFHSIEDRMVKRFFQHRAGKTGRANRYAPEQEETPSQFTLVTRKAVGPDDEELAENPRS 297

Query: 307 RSAKLRAGMRT----VERSIEDDSFVHLPRL 333
           RSA+LR G RT    VE S +D   + +P+L
Sbjct: 298 RSARLRVGRRTDAAPVEISAKD---IGMPQL 325


>gi|163738706|ref|ZP_02146120.1| methyltransferase [Phaeobacter gallaeciensis BS107]
 gi|163741583|ref|ZP_02148974.1| S-adenosyl-methyltransferase MraW [Phaeobacter gallaeciensis 2.10]
 gi|161385317|gb|EDQ09695.1| S-adenosyl-methyltransferase MraW [Phaeobacter gallaeciensis 2.10]
 gi|161388034|gb|EDQ12389.1| S-adenosyl-L-methionine-dependent methyltransferase [Phaeobacter
           gallaeciensis BS107]
          Length = 335

 Score =  288 bits (736), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 156/317 (49%), Positives = 205/317 (64%), Gaps = 5/317 (1%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRD 67
           M++    + G HVPVLL  ++  + P  G+  LD TFGAGGYSR   + G++ VI +DRD
Sbjct: 1   MTTDRPTSTGPHVPVLLRPLLKAVAPVSGR-WLDGTFGAGGYSRGLLEAGADHVIGVDRD 59

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
           P A    +  + DY  + +L Q  FS++ +Y  D  +DGVV DLGVSSMQ+D  +RGFSF
Sbjct: 60  PLAFEMAESWIGDYAGRLTLQQGVFSRMDEYAQD--LDGVVLDLGVSSMQLDLAERGFSF 117

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
            + GPLDMRMS  G SA+D+V + +   L  IL + GEE+ + RIA AIVK R  AP  T
Sbjct: 118 MRDGPLDMRMSQDGPSAADLVAELDEAALADILFLFGEERASRRIARAIVKARTEAPITT 177

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T  L+ +I+  +  SK  + HPATRSFQ LRI VN E EEL +GL +AE+ALK GGLL V
Sbjct: 178 TLQLAGIIEHCLPRSKPGQSHPATRSFQGLRIAVNAEYEELFEGLLAAERALKPGGLLAV 237

Query: 248 VSFHSLEDRLVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+FHS+EDR+VK+FF  R+GK   A R+       P+ F  +T+K V P  E++A N RS
Sbjct: 238 VTFHSIEDRMVKRFFQHRAGKTGRANRYAPEVEETPSQFALVTRKAVGPDDEELAENPRS 297

Query: 307 RSAKLRAGMRTVERSIE 323
           RSA+LR G RT    IE
Sbjct: 298 RSARLRVGRRTEATPIE 314


>gi|167647637|ref|YP_001685300.1| S-adenosyl-methyltransferase MraW [Caulobacter sp. K31]
 gi|263445765|sp|B0T839|RSMH_CAUSK RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|167350067|gb|ABZ72802.1| S-adenosyl-methyltransferase MraW [Caulobacter sp. K31]
          Length = 322

 Score =  287 bits (734), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 147/301 (48%), Positives = 196/301 (65%), Gaps = 3/301 (0%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           HV VLL +V+A L   PG +++D TFGAGGY+R+    G++V A DRDP       E   
Sbjct: 15  HVSVLLGEVVAALASGPGDMVIDGTFGAGGYTRAILATGASVTAFDRDPSVQRFAAE-FS 73

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
               +F L Q  FSQ+ +Y+ D  VDGV  DLGVSSMQ+D  +RGFSF + GPLDMRM  
Sbjct: 74  ATDGRFRLIQDRFSQITEYLEDASVDGVTLDLGVSSMQLDEAERGFSFMRDGPLDMRMGA 133

Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199
            G +A+D+VN  +  +L RIL + GEE  + RIA  I+KRR+  PF  T DL+ +I++ +
Sbjct: 134 DGPTAADLVNDLDHTELARILYVYGEEHASRRIASFIIKRREERPFTRTLDLAHVIERAL 193

Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259
              K  ++HPATRSFQ LRI VN E++EL  GL +AE+ LK GG L VV+FHSLEDR+VK
Sbjct: 194 GGRKGAKVHPATRSFQGLRIAVNAELDELEAGLLAAERVLKPGGRLAVVTFHSLEDRIVK 253

Query: 260 KFFASRSGKVM-AVRHMIPSNA-HPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
            F A R+G+     RH+ P  A  P  FQ I+ K + P + ++A N R+RS+KLRA +RT
Sbjct: 254 NFLAERAGRTPGGSRHLPPVEAGAPPSFQLISSKAIAPGEAELAVNPRARSSKLRAAVRT 313

Query: 318 V 318
            
Sbjct: 314 T 314


>gi|254470515|ref|ZP_05083919.1| S-adenosyl-methyltransferase MraW [Pseudovibrio sp. JE062]
 gi|211960826|gb|EEA96022.1| S-adenosyl-methyltransferase MraW [Pseudovibrio sp. JE062]
          Length = 346

 Score =  280 bits (716), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 157/329 (47%), Positives = 215/329 (65%), Gaps = 11/329 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+PVLL++V   + PAPG VI+D TFGAGGYS +F + G++VI +DRDP A+  G+   +
Sbjct: 19  HIPVLLDRVREAMAPAPGDVIVDGTFGAGGYSSAFLEAGASVIGIDRDPDAIRDGRALEQ 78

Query: 80  DYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
               +  L    F  L+++    G   VDGVV DLGVSSMQ+D   RGFSF+  GPLDMR
Sbjct: 79  ASDGRLKLVHGQFVDLEEHARALGHDAVDGVVMDLGVSSMQLDQAARGFSFRFDGPLDMR 138

Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
           M   G SA+DVVN    KDLTRI+G+LGEEK+AS ++HAI + R+  PF+TT +L+ +I+
Sbjct: 139 MEQDGPSAADVVNTMERKDLTRIIGLLGEEKRASSVSHAICQAREEKPFETTLELARVIE 198

Query: 197 KTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           K V  + K   IHPATR+FQALRI+VN E+ + A  L +AE+ L+ GG L+VV+FHSLED
Sbjct: 199 KVVKRNPKKASIHPATRTFQALRIYVNGELHQAAGALAAAERILRPGGRLVVVTFHSLED 258

Query: 256 RLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           R+VK+F A R   +    RHM   +  P  F+ I K     + E+V+ N R+RSA+LRAG
Sbjct: 259 RIVKRFLADRCKTRGGGSRHMPEVDIPPPTFEFIVKGNQDASVEEVSENPRARSARLRAG 318

Query: 315 MR--TVERSIEDDSFVHLPRLPTLSQFRG 341
            R  +  R ++    +H   +P L+ F G
Sbjct: 319 RRLDSPARPLD----IHEAGVPRLASFHG 343


>gi|56696072|ref|YP_166426.1| S-adenosyl-methyltransferase MraW [Ruegeria pomeroyi DSS-3]
 gi|68565435|sp|Q5LU79|RSMH_SILPO RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|56677809|gb|AAV94475.1| S-adenosyl-methyltransferase MraW [Ruegeria pomeroyi DSS-3]
          Length = 331

 Score =  280 bits (716), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 146/300 (48%), Positives = 197/300 (65%), Gaps = 5/300 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETM 78
           H+PVLL  ++A + P  G + LD TFGAGGY+R     G++ VIA+DRDP A        
Sbjct: 13  HIPVLLRPLLAAVAPVSG-IWLDGTFGAGGYTRGLLAAGADRVIAVDRDPLAFELAAGWA 71

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138
           +DY ++  + Q  FS++ +Y  D  +DGVV DLGVSSMQ+D  +RGFSF K GPLDMRMS
Sbjct: 72  KDYGDRLVMQQGVFSRMDEYASD--LDGVVLDLGVSSMQLDLAERGFSFMKDGPLDMRMS 129

Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198
             G SA+D+VN A   DL  IL   GEE+ + RIA AIVK R  AP +TT  L++L++  
Sbjct: 130 QEGPSAADLVNTATEADLADILFHYGEERASRRIARAIVKARAEAPIETTLQLAALVESC 189

Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258
           +   K  + HPATRSFQALRI VN E +EL +GL +AE+ALK GG L VV+FHS+EDR+V
Sbjct: 190 LPRPKPGQSHPATRSFQALRIAVNAEYDELFEGLMAAERALKPGGKLAVVTFHSIEDRMV 249

Query: 259 KKFFASRSGKVMAVRHMIPSNAHPAV-FQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           K+F  +R+G+        P     A  F+ +++K + P  +++A N R+RSAKLR  +RT
Sbjct: 250 KRFLQARAGRSGRANRYAPETVEDAPQFELLSRKAIGPDDQELAENPRARSAKLRVALRT 309


>gi|126741287|ref|ZP_01756965.1| S-adenosyl-methyltransferase MraW [Roseobacter sp. SK209-2-6]
 gi|126717605|gb|EBA14329.1| S-adenosyl-methyltransferase MraW [Roseobacter sp. SK209-2-6]
          Length = 330

 Score =  279 bits (714), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 152/316 (48%), Positives = 199/316 (62%), Gaps = 5/316 (1%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRD 67
           M++  +   G H+PVLL  ++A + P  G+  LD TFGAGGY+R   + G S VI +DRD
Sbjct: 1   MTTDQNTANGPHIPVLLRPLLAAVAPVSGR-WLDGTFGAGGYTRGLLEEGASQVIGVDRD 59

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
           P A    Q    +Y ++  L +  FS++ +Y  D  +DGVV DLGVSSMQ+D  +RGFSF
Sbjct: 60  PLAFELAQPWATEYGDRLLLQEGVFSRMDEYAQD--LDGVVLDLGVSSMQLDLAERGFSF 117

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
            + GPLDMRMS SG SA+D+V       L  IL   GEE+ + RIA AIVK R   P  T
Sbjct: 118 MRDGPLDMRMSQSGPSAADLVANLEEAQLADILFQFGEERASRRIAKAIVKARAEEPITT 177

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T  L+S+++  +  SK  + HPATRSFQALRI VN E EEL  GL +AE+ALK GGLL V
Sbjct: 178 TLQLASIVEGCLPRSKPGQSHPATRSFQALRIAVNAEYEELFNGLLAAERALKPGGLLAV 237

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-FQSITKKVVVPTQEDVAFNRRS 306
           V+FHS+EDR+VK+FF  R+GK        P        F+ +T+K V P  E++A N RS
Sbjct: 238 VTFHSVEDRMVKRFFQHRAGKTGRANRYAPELEEVETQFELVTRKAVGPDDEELAENPRS 297

Query: 307 RSAKLRAGMRTVERSI 322
           RSA+LR G RT+   +
Sbjct: 298 RSARLRVGRRTMAEPV 313


>gi|254467183|ref|ZP_05080594.1| S-adenosyl-methyltransferase MraW [Rhodobacterales bacterium Y4I]
 gi|206688091|gb|EDZ48573.1| S-adenosyl-methyltransferase MraW [Rhodobacterales bacterium Y4I]
          Length = 330

 Score =  279 bits (713), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 146/302 (48%), Positives = 196/302 (64%), Gaps = 5/302 (1%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQE 76
           G H+PVLL  ++  + P  G+  LD TFGAGGY+R     G++ VIA+DRDP A    + 
Sbjct: 10  GPHIPVLLRPLLKAVAPVSGR-WLDGTFGAGGYTRGLLDAGADQVIAVDRDPLAFELAKP 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
               Y ++  L Q  FS++ +Y  D  +DGVV DLGVSSMQ+D  +RGFSF K GPLDMR
Sbjct: 69  WAGQYGDRLILQQGVFSRMDEYAQD--LDGVVLDLGVSSMQLDLAERGFSFMKDGPLDMR 126

Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
           MS SG SA+D++ +     +  IL   GEE+ + RIA AIV+ R++ P  TT  L+ +I+
Sbjct: 127 MSQSGPSAADLIAELTEAQIADILYHYGEERASRRIARAIVREREAEPITTTLRLAGIIE 186

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
             +   K  + HPATRSFQ LRI VN E EEL +GL +AE+ALK GGLL VV+FHS+EDR
Sbjct: 187 SCLPRPKPGQSHPATRSFQGLRIAVNAEYEELFEGLLAAERALKPGGLLAVVTFHSVEDR 246

Query: 257 LVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           +VK+FF  R+GK        P     PA F+ +T+K V P ++++A N R+RSA+LR G 
Sbjct: 247 MVKRFFQHRAGKTGRANRYAPEQEETPAQFELVTRKAVGPDEQELAENPRARSARLRVGR 306

Query: 316 RT 317
           RT
Sbjct: 307 RT 308


>gi|86137691|ref|ZP_01056268.1| S-adenosyl-methyltransferase MraW [Roseobacter sp. MED193]
 gi|85826026|gb|EAQ46224.1| S-adenosyl-methyltransferase MraW [Roseobacter sp. MED193]
          Length = 330

 Score =  278 bits (712), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 150/302 (49%), Positives = 196/302 (64%), Gaps = 5/302 (1%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQE 76
           G HVPVLL  ++  + P  G+  LD TFGAGGY+R   + G+  VI +DRDP A    Q 
Sbjct: 10  GPHVPVLLRPLLKAVAPVSGR-WLDGTFGAGGYTRGLLEAGAEQVIGVDRDPLAFELAQP 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
              DY ++  L +  FS++ +Y  D  +DGVV DLGVSSMQ+D  +RGFSF + GPLDMR
Sbjct: 69  WAADYGDRLVLQEGVFSKMDEYAQD--LDGVVLDLGVSSMQLDLAERGFSFMRDGPLDMR 126

Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
           MS SG SA+D+V + +   L  IL   GEE+ + RIA +IVK R+  P  TT  L+ LI+
Sbjct: 127 MSQSGPSAADLVAELSEVQLADILFHFGEERASRRIAKSIVKTRELEPITTTLQLAKLIE 186

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
             +  +K  + HPATRSFQALRI VN E EEL  GL +AE+ALK GGLL VV+FHS+EDR
Sbjct: 187 GCLPRAKPGKSHPATRSFQALRIAVNAEYEELFNGLLAAERALKPGGLLAVVTFHSVEDR 246

Query: 257 LVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           +VK+FF  R+ K        P  A  P+ F+ +T+K V P  +++A N RSRSA+LR G 
Sbjct: 247 MVKRFFQHRANKTGRANRYAPEVAEIPSQFELVTRKAVGPDDDELAENPRSRSARLRVGR 306

Query: 316 RT 317
           RT
Sbjct: 307 RT 308


>gi|260462082|ref|ZP_05810326.1| S-adenosyl-methyltransferase MraW [Mesorhizobium opportunistum
           WSM2075]
 gi|259031942|gb|EEW33209.1| S-adenosyl-methyltransferase MraW [Mesorhizobium opportunistum
           WSM2075]
          Length = 338

 Score =  278 bits (710), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 155/328 (47%), Positives = 216/328 (65%), Gaps = 7/328 (2%)

Query: 15  HTIGD---HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAV 71
           H +G    H+PVLL +V+  L PA G +I+D TFGAGGY+++    G++V+A+DRDP A+
Sbjct: 10  HAVGGPARHIPVLLGEVLEALAPAEGDIIIDGTFGAGGYTKAILATGASVVAIDRDPDAI 69

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           + G++       +  L QA FS L ++   + VDGVV D+GVSSMQ+D  +RGFSF+  G
Sbjct: 70  AAGRDLEAQSGGRLRLVQAPFSTLDEHA--ESVDGVVLDIGVSSMQLDQAERGFSFRNDG 127

Query: 132 PLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           PLDMRM+ +G+SA+DVVN     DL RI G LGEE+ A RIA  I  RR+  PF+ T +L
Sbjct: 128 PLDMRMAQAGLSAADVVNSFKPGDLARIFGFLGEERHAGRIARMIEARREKRPFERTLEL 187

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           +  I+  +  +  ++IHPATR FQALRIFVN+E+ ELA+ L +AE+ALK GG L+VV+FH
Sbjct: 188 ADAIETHIGRAPKDKIHPATRVFQALRIFVNDELGELAKALFAAERALKPGGRLVVVTFH 247

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+VK+F A R+      RH+  + A  A F+      V P   ++A N R+RSA+L
Sbjct: 248 SLEDRIVKRFIADRADTASGSRHLPEAQARSATFRK-DGGGVTPGDAEIAANPRARSARL 306

Query: 312 RAGMRTVERSIEDD-SFVHLPRLPTLSQ 338
           RA +RT   +   D S   LP+LP + +
Sbjct: 307 RAAIRTEAPARPGDFSIFGLPKLPGVDR 334


>gi|255262076|ref|ZP_05341418.1| S-adenosyl-methyltransferase MraW [Thalassiobium sp. R2A62]
 gi|255104411|gb|EET47085.1| S-adenosyl-methyltransferase MraW [Thalassiobium sp. R2A62]
          Length = 326

 Score =  277 bits (708), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 152/308 (49%), Positives = 199/308 (64%), Gaps = 8/308 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI-ALDRDPFAVSCGQETM 78
           H+PVLL  ++    P  G+  LD TFGAGGY+R     G++V+  +DRDP A       +
Sbjct: 13  HIPVLLRPLLVACAPVSGR-WLDGTFGAGGYTRGLIDDGADVVYGVDRDPLAFDMAAPWV 71

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138
            +Y ++  L + TFS L  Y  D  +DGVV DLGVSSMQ+D  +RGFSF + GPLDMRMS
Sbjct: 72  GEYGDKIKLVEGTFSALDTYADD--LDGVVLDLGVSSMQLDLAERGFSFMRDGPLDMRMS 129

Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198
            SG SA+D+VN A+   L  IL   GEE+ + RIA AIVK R   P  TT +L+++I+  
Sbjct: 130 QSGPSAADIVNNADETALANILYDFGEERASRRIARAIVKAR---PLNTTLELAAVIESC 186

Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258
           +   K N+ HPATRSFQA+RI VN+E  ELA+GL +AE+ALK GGLL VVSFHS+EDR+V
Sbjct: 187 LPRPKPNQSHPATRSFQAIRIAVNDEYGELAEGLMAAERALKPGGLLAVVSFHSVEDRMV 246

Query: 259 KKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           K+F   R+GK     R+   + A  A F+ +T+K V P  +++  N RSRSAKLR   RT
Sbjct: 247 KRFMQERAGKTGRGSRYAPETEAIEAAFEIVTRKAVGPDDDELQENPRSRSAKLRVARRT 306

Query: 318 VERSIEDD 325
              S E D
Sbjct: 307 DAPSGEID 314


>gi|328542958|ref|YP_004303067.1| ribosomal RNA small subunit methyltransferase H [polymorphum gilvum
           SL003B-26A1]
 gi|326412704|gb|ADZ69767.1| Ribosomal RNA small subunit methyltransferase H [Polymorphum gilvum
           SL003B-26A1]
          Length = 346

 Score =  275 bits (703), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 142/289 (49%), Positives = 193/289 (66%), Gaps = 5/289 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           HVPVLL  V+  L PA G+VI+D TFGAGGYSR+F + G+ VI +DRDP A++ GQ+ +R
Sbjct: 19  HVPVLLSAVLDTLRPAEGEVIVDGTFGAGGYSRAFLEAGAAVIGVDRDPDAIAGGQDLVR 78

Query: 80  DYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
               +  L    F+ L  +    G   VDGVV DLGVSSMQID  +RGFSF + GPLDMR
Sbjct: 79  ASGGRLVLVPGRFADLDAHARACGHEAVDGVVLDLGVSSMQIDQAERGFSFMRDGPLDMR 138

Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
           M  +G SA+DVVN    +DLTRI+G+LGEEK+A+ +A AI + R   PF  T +L+ L++
Sbjct: 139 MEQAGPSAADVVNTLPARDLTRIIGLLGEEKRAAAVARAISEARAEKPFTRTGELADLVE 198

Query: 197 KTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           + V  + K   IHPATR+FQALRI+VN E+ + A+ L +AE+ L+ GG L+VVSFHSLED
Sbjct: 199 RVVGRAPKKAHIHPATRTFQALRIYVNGELHQAAEALTAAERILRPGGRLVVVSFHSLED 258

Query: 256 RLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
           R+VK+F A R+  +    RH+  +   PA F+ + K  V   + + + N
Sbjct: 259 RIVKRFLADRTRVRAGGSRHLPEAEVPPATFELLVKGAVEADEAETSAN 307


>gi|319782840|ref|YP_004142316.1| S-adenosyl-methyltransferase MraW [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317168728|gb|ADV12266.1| S-adenosyl-methyltransferase MraW [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 344

 Score =  275 bits (703), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 157/328 (47%), Positives = 215/328 (65%), Gaps = 7/328 (2%)

Query: 15  HTIGD---HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAV 71
           H +G    H+PVLL +V+  L PA G +I+D TFGAGGY+R+    G++V+A+DRDP A+
Sbjct: 16  HAVGGSARHIPVLLAEVLEALVPAQGDLIIDGTFGAGGYTRAILATGASVVAIDRDPDAI 75

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           + G++       +  L QA FS L ++V  +  DG+V D+GVSSMQ+D  +RGFSF+  G
Sbjct: 76  AAGRDLEVQSGGRLRLVQAPFSTLDEHV--ESADGIVLDIGVSSMQLDQAERGFSFRADG 133

Query: 132 PLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           PLDMRM+ SG+SA+DVVN     DL RI G LGEE+ A RIA  I  RR+  PF+ T +L
Sbjct: 134 PLDMRMAQSGLSAADVVNSFKPGDLARIFGFLGEERHAGRIARMIEARREKRPFERTLEL 193

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           +  I+  +  +  ++IHPATR FQALRIFVN+E+ ELA+ L +AE+ALK GG L VV+FH
Sbjct: 194 ADAIETHIGRAPKDKIHPATRVFQALRIFVNDELGELAKALFAAERALKPGGRLAVVTFH 253

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+VK+F A R+      RH+  ++A  A F+     V     E VA N R+RSA+L
Sbjct: 254 SLEDRIVKRFIADRADVATGSRHLPEAHARTATFRKAGGGVTAGDAE-VAANPRARSARL 312

Query: 312 RAGMRTVERSIEDD-SFVHLPRLPTLSQ 338
           RA +RT   +   D S   LP+LP + +
Sbjct: 313 RAAVRTQAPARGSDFSIFGLPKLPGIDR 340


>gi|99081855|ref|YP_614009.1| methyltransferase [Ruegeria sp. TM1040]
 gi|123378785|sp|Q1GF19|RSMH_SILST RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|99038135|gb|ABF64747.1| methyltransferase [Ruegeria sp. TM1040]
          Length = 329

 Score =  275 bits (703), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 147/308 (47%), Positives = 197/308 (63%), Gaps = 5/308 (1%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQE 76
           G H+PVLL+ ++A + P  G+  LD TFGAGGY++     G++ VI +DRDP A    Q 
Sbjct: 10  GPHIPVLLKPLLAAVAPVTGR-WLDGTFGAGGYTKGLLAAGADQVIGVDRDPLAFEMAQP 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
              +Y ++  L Q  FS++ +Y  +  +DGVV DLGVSSMQ+D  +RGFSF K GPLDMR
Sbjct: 69  WAAEYGDRLVLQQGVFSRMDEYAQE--LDGVVLDLGVSSMQLDLAERGFSFMKEGPLDMR 126

Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
           MS  G SA+D+V + +   L  +L   GEE+ + RIA AIVK R   P  TT  L+ +I+
Sbjct: 127 MSQDGPSAADLVAELSEVQLADVLYSFGEERASRRIAKAIVKERAQEPITTTLRLAEIIE 186

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
             +   K  + HPATRSFQALRI VN E EEL  GL +AE+ALK GGLL VV+FHS+EDR
Sbjct: 187 GCLPRPKPGQSHPATRSFQALRIAVNGEYEELMGGLLAAERALKPGGLLAVVTFHSVEDR 246

Query: 257 LVKKFFASRSGKVMAVRHMIPS-NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           +VK+FF  R+ K        P+    P+ F+ +T+K V P ++++A N RSRSA LR G 
Sbjct: 247 MVKRFFQHRANKTGNANRYAPAMEEQPSQFELVTRKAVGPDKDELAQNPRSRSALLRVGR 306

Query: 316 RTVERSIE 323
           RT    +E
Sbjct: 307 RTDAAPVE 314


>gi|259416349|ref|ZP_05740269.1| S-adenosyl-methyltransferase MraW [Silicibacter sp. TrichCH4B]
 gi|259347788|gb|EEW59565.1| S-adenosyl-methyltransferase MraW [Silicibacter sp. TrichCH4B]
          Length = 329

 Score =  274 bits (700), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 148/308 (48%), Positives = 194/308 (62%), Gaps = 5/308 (1%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQE 76
           G HVPVLL+ ++  + P  G+  LD TFGAGGY++     G+  VI +DRDP A    Q+
Sbjct: 10  GPHVPVLLKPLLEAVAPVTGR-WLDGTFGAGGYTKGLLAAGAEQVIGVDRDPLAFEMAQD 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
              +Y  +  L Q  FS++ +Y  D  +DGVV DLGVSSMQ+D  +RGFSF K GPLDMR
Sbjct: 69  WAEEYGARLVLQQGVFSRMDEYASD--LDGVVLDLGVSSMQLDLAERGFSFMKDGPLDMR 126

Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
           MS  G SA+D+V +     L  IL   GEE+ + RIA AIV+ R   P  TT  L+ +I+
Sbjct: 127 MSQDGSSAADLVAELTEVQLADILYSFGEERASRRIAKAIVRERALEPITTTLRLAEIIE 186

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
             +   K  + HPATRSFQALRI VN E EEL  GL +AE+ALK GGLL VV+FHS+EDR
Sbjct: 187 SCLPRPKPGQSHPATRSFQALRIAVNGEYEELMGGLLAAERALKPGGLLAVVTFHSVEDR 246

Query: 257 LVKKFFASRSGKVMAVRHMIPS-NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           +VK+FF  R+ K        P+    P+ F+ +T+K V P ++++A N RSRSA LR G 
Sbjct: 247 MVKRFFQHRANKTGNANRFAPAMEEQPSQFELVTRKAVGPDKDELAQNPRSRSALLRVGR 306

Query: 316 RTVERSIE 323
           RT    +E
Sbjct: 307 RTDAAPVE 314


>gi|114763021|ref|ZP_01442451.1| S-adenosyl-methyltransferase MraW [Pelagibaca bermudensis HTCC2601]
 gi|114544345|gb|EAU47353.1| S-adenosyl-methyltransferase MraW [Roseovarius sp. HTCC2601]
          Length = 330

 Score =  273 bits (697), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 143/300 (47%), Positives = 194/300 (64%), Gaps = 5/300 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETM 78
           HVPVLL  ++  + P  G  + D TFGAGGY+R   + G++ VI +DRDP A    Q  +
Sbjct: 13  HVPVLLRPLLKAVAPVSGTWV-DGTFGAGGYARGLLEAGADKVIGIDRDPLAHQMAQAWI 71

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138
            DY ++  L +  F+ +   +   G DGVV DLGVSSMQ+D  +RGFSF K GPLDMRM 
Sbjct: 72  GDYGDRLELVEGNFADMDKVI--SGADGVVLDLGVSSMQLDIAERGFSFMKDGPLDMRME 129

Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198
            SG SA+D+V + +   L  +L   GEE+ + RIA AIVK R   P +TT  LSS+++  
Sbjct: 130 QSGESAADLVKRLDETALADVLYTYGEERASRRIARAIVKARDQEPIETTARLSSIVEAC 189

Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258
           +   K  + HPATRSFQALRI VN+E   L +GL +AE+ALK GG L VV+FHS+EDR+V
Sbjct: 190 LPRPKPGQSHPATRSFQALRIAVNDEYGALWRGLMAAERALKPGGWLCVVTFHSVEDRMV 249

Query: 259 KKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           K+FF +R+G++  V RH   +      F+ +T+K V P  E++A N R+RSA+LR G RT
Sbjct: 250 KRFFQARTGRLDTVSRHAPVTETEAPRFELLTRKAVGPDDEELAANPRARSARLRIGKRT 309


>gi|260428345|ref|ZP_05782324.1| S-adenosyl-methyltransferase MraW [Citreicella sp. SE45]
 gi|260422837|gb|EEX16088.1| S-adenosyl-methyltransferase MraW [Citreicella sp. SE45]
          Length = 330

 Score =  272 bits (695), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 143/300 (47%), Positives = 194/300 (64%), Gaps = 5/300 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETM 78
           HVPVLL  ++  + P  G  + D TFGAGGYSR   + G++ VI +DRDP A     E +
Sbjct: 13  HVPVLLRPLLDAVAPVSGTWV-DGTFGAGGYSRGLLEAGADRVIGIDRDPLAHRMAAEWI 71

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138
             Y  +  L +  F+ +  YV   G DGVV DLGVSSMQ+D  +RGFSFQ+ GPLDMRM 
Sbjct: 72  GSYGGRLELVEGNFADMDQYV--SGADGVVLDLGVSSMQLDIAERGFSFQRDGPLDMRME 129

Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198
            +G SA+++V + +   L  +L   GEE+ + RIA AIVK R+  P +TT  LS++++  
Sbjct: 130 QAGESAAELVKRLDETTLADVLYTYGEERASRRIARAIVKAREQEPIETTARLSAIVEAC 189

Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258
           +   K  + HPATRSFQALRI VN+E   L +GL +AEKALK GG L VV+FHS+EDR+V
Sbjct: 190 LPRPKPGQSHPATRSFQALRIAVNDEYGALWRGLMAAEKALKPGGFLCVVTFHSVEDRMV 249

Query: 259 KKFFASRSGKVMAVRHMIP-SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           K+F  +RSG++ AV    P   A    F ++T+K + P  +++A N RSRSA+LR G RT
Sbjct: 250 KRFLQARSGRLGAVSRYAPVVEAEEPQFVTMTRKAIGPDDDELAANPRSRSARLRIGQRT 309


>gi|13471557|ref|NP_103123.1| S-adenosyl-methyltransferase MraW [Mesorhizobium loti MAFF303099]
 gi|20139098|sp|Q98KA5|RSMH_RHILO RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|14022299|dbj|BAB48909.1| mll1565 [Mesorhizobium loti MAFF303099]
          Length = 338

 Score =  271 bits (694), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 146/327 (44%), Positives = 202/327 (61%), Gaps = 5/327 (1%)

Query: 15  HTIGD---HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAV 71
           H +G    H+PVLL +V+  L PA   +I+D TFGAGGY+R+    G++V+A+DRDP A+
Sbjct: 10  HAVGGSVRHIPVLLGEVLEALAPAERDIIIDGTFGAGGYTRAILATGASVVAIDRDPDAI 69

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           + G++       +  L QA FS L ++V  +  DGVV D+GVSSMQ+D  +RGFSF+  G
Sbjct: 70  AAGRDLEVQSGGRLRLVQAPFSTLDEHV--ESADGVVLDIGVSSMQLDQAERGFSFRFDG 127

Query: 132 PLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           PLDMRM+ +G+SA+DVVN     DL RI G LGEE+ A RIA  I  RR+  PF+ T +L
Sbjct: 128 PLDMRMAQAGLSAADVVNSFKPGDLARIFGFLGEERHAGRIARMIEARREKKPFEGTLEL 187

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           +  I+  +  +  ++IHPATR FQALRI+VN+E+ ELA+ L +AE+ALK GG L+VV+FH
Sbjct: 188 ADAIETHIGRAPKDKIHPATRVFQALRIYVNDELGELAKALFAAERALKPGGRLVVVTFH 247

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+VK+F A R+      RH+  + A  A F+     V     E  A  R   +   
Sbjct: 248 SLEDRIVKRFIADRADVATGSRHLPEAQARTATFRKAGGGVTAGDAEVAANPRARSARLR 307

Query: 312 RAGMRTVERSIEDDSFVHLPRLPTLSQ 338
            A          D S   LP+LP + +
Sbjct: 308 AAIRTEAPARAGDFSIFGLPKLPGIDR 334


>gi|163746120|ref|ZP_02153479.1| S-adenosyl-methyltransferase MraW [Oceanibulbus indolifex HEL-45]
 gi|161380865|gb|EDQ05275.1| S-adenosyl-methyltransferase MraW [Oceanibulbus indolifex HEL-45]
          Length = 327

 Score =  271 bits (694), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 149/309 (48%), Positives = 199/309 (64%), Gaps = 5/309 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78
           H PVLL  ++  + P  G V LD TFGAGGY+R F + G+  VIA+DRDP A     E  
Sbjct: 11  HTPVLLRPILTAVAPVEG-VWLDGTFGAGGYTRGFLEAGAARVIAVDRDPLAFEMAAEWA 69

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138
            D+ ++ ++ Q  FS++ +Y  D  +DGVV DLGVSSMQ+D  +RGFSF K GPLDMRMS
Sbjct: 70  GDFGDRITMQQGVFSRMDEYAQD--LDGVVLDLGVSSMQLDQAERGFSFMKDGPLDMRMS 127

Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198
             G SA+D+VN+A  + +  IL   GEE+ + RIA +IV+ R+ AP  TT +L+ L++  
Sbjct: 128 QDGPSAADLVNEAEEEIIANILFQYGEERASRRIAKSIVRAREVAPITTTLELAKLVEGC 187

Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258
           +  SK  + HPATRSFQALRI VNNE  EL QGL +AE+ALK GG L VV+FHS+EDR+V
Sbjct: 188 LPRSKPGQSHPATRSFQALRIAVNNEYGELFQGLMAAERALKPGGKLAVVTFHSVEDRMV 247

Query: 259 KKFFASRSGKVMAVRHMIPSNAHPAV-FQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           K+F  +R+G         P+    A  F   ++K + P  +++  N RSRSAKLR   RT
Sbjct: 248 KRFLTARAGAGGNANRFAPALEQEAPQFTLKSRKAIGPDAQELDENPRSRSAKLRVATRT 307

Query: 318 VERSIEDDS 326
              S E D+
Sbjct: 308 DAPSGEIDA 316


>gi|146276735|ref|YP_001166894.1| S-adenosyl-methyltransferase MraW [Rhodobacter sphaeroides ATCC
           17025]
 gi|262825577|sp|A4WQC5|RSMH_RHOS5 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|145554976|gb|ABP69589.1| S-adenosyl-methyltransferase MraW [Rhodobacter sphaeroides ATCC
           17025]
          Length = 331

 Score =  271 bits (693), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 146/300 (48%), Positives = 197/300 (65%), Gaps = 4/300 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETM 78
           H+PVLL  ++A + P  G V LD TFGAGGY+R   + G++ VI +DRDP A+   Q+  
Sbjct: 11  HIPVLLRPLLAAVAPVSG-VWLDGTFGAGGYARGLLEAGADRVIGVDRDPLALEMAQDWA 69

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138
             Y ++  L   TFSQL D    + +DGVV DLGVSSMQ+D  DRGFSFQK GPLDMRMS
Sbjct: 70  GAYGDRLRLVAGTFSQL-DVHAGEPLDGVVLDLGVSSMQLDQADRGFSFQKDGPLDMRMS 128

Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198
             G SA+D+VN+A+ + L  IL   GEE+ + RIA AIV+ R + P   T  L+ ++ + 
Sbjct: 129 QQGESAADLVNEASEETLADILYHYGEERASRRIARAIVEARAAGPITRTLHLAEIVARC 188

Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258
           +   K  ++HPATRSFQA+RI VN E  EL +GL +AE+ALK GG L VV+FHSLEDR+V
Sbjct: 189 LPRPKPGQMHPATRSFQAIRIAVNAEFSELVEGLEAAERALKPGGRLAVVTFHSLEDRIV 248

Query: 259 KKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           K+F   RS G+    R+   + A  A F    ++ + P + ++A N R+RSA+LR G+RT
Sbjct: 249 KRFLQLRSGGEGQGNRYAPETRAEAARFTLPLRRAISPDEAELADNPRARSARLRVGVRT 308


>gi|192292422|ref|YP_001993027.1| S-adenosyl-methyltransferase MraW [Rhodopseudomonas palustris
           TIE-1]
 gi|262825558|sp|B3QFN9|RSMH_RHOPT RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|192286171|gb|ACF02552.1| S-adenosyl-methyltransferase MraW [Rhodopseudomonas palustris
           TIE-1]
          Length = 332

 Score =  271 bits (693), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 154/323 (47%), Positives = 200/323 (61%), Gaps = 10/323 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETM 78
           H+PVL  + + LL P  G + +D TFGAGGY+R   +  GS VIA+DRDP A++ G + +
Sbjct: 8   HIPVLGPEAVGLLAPRAGGIYVDGTFGAGGYTRLILETAGSRVIAIDRDPTAIAGGADLV 67

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
            D   + +L Q  FS L D    +G   VDGVV D+GVSSMQ+D  +RGFSF+  GPLDM
Sbjct: 68  ADAGHRLTLVQDRFSNLADVCAAQGAATVDGVVMDIGVSSMQLDQAERGFSFRFDGPLDM 127

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RM   G SA+DVV +A+  DL  I+ I GEE+ +  +A AIV  R  AP  TT+ L+ ++
Sbjct: 128 RMGRDGPSAADVVARASETDLANIIYIFGEERYSRHVARAIVAARSDAPITTTKALADIV 187

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
            K V  +K   IHPATR+FQ LRIFVN E++EL Q L +AE+ LK GG L VVSFHSLED
Sbjct: 188 AKVVR-AKPGEIHPATRTFQGLRIFVNEELDELHQALDAAERVLKPGGRLAVVSFHSLED 246

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPA-VFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           R+VK F   RS      RH+ P  A  A  F  ++K+ +V    +VA N R+RSAKLR  
Sbjct: 247 RIVKTFLTERSKTGGGSRHL-PEVAQAAPSFTLLSKRPIVAGDAEVAANPRARSAKLRGA 305

Query: 315 MRTVERSIEDDSFVHLPRLPTLS 337
            RT        +   LP  PTL+
Sbjct: 306 ERT---EAPAHAAGDLPGWPTLA 325


>gi|84516398|ref|ZP_01003757.1| S-adenosyl-methyltransferase MraW [Loktanella vestfoldensis SKA53]
 gi|84509434|gb|EAQ05892.1| S-adenosyl-methyltransferase MraW [Loktanella vestfoldensis SKA53]
          Length = 326

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 149/312 (47%), Positives = 199/312 (63%), Gaps = 12/312 (3%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRD 67
           MS+A   T   H+PVL+  +IA + P  G V LD TFG GGY+R+    G++ VIA+DRD
Sbjct: 1   MSAAADQT--PHIPVLIRPLIAAVGPVTG-VWLDGTFGNGGYTRALLAAGAHKVIAVDRD 57

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
           P A       + DY ++  + +  FSQL  Y  D  +DGVV DLGVSSMQ+D  +RGFSF
Sbjct: 58  PLAFQMAAGWVADYGDRIVMQEGVFSQLDTYAQD--LDGVVLDLGVSSMQLDLAERGFSF 115

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
            + GPLDMRMS SG+SA+D+ N A   +L  I+ + GEE+ + RIA AIV  R   P  T
Sbjct: 116 MRDGPLDMRMSQSGLSAADLCNDAEEAELADIIYLYGEERASRRIAKAIVAAR---PLTT 172

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T  L+ +++  +  +K N+ HPATR+FQALRI VNNE  ELA GL +AE+ALK GG L V
Sbjct: 173 TGQLAKIVESCLPRAKPNQSHPATRTFQALRIAVNNEYGELAMGLMAAERALKPGGQLAV 232

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH--PAVFQSITKKVVVPTQEDVAFNRR 305
           V+FHS+EDR+ K+F  +RSG         P      PA F+   +K + P ++++A N R
Sbjct: 233 VTFHSVEDRMAKRFLQARSGNNANANRYAPETTQVTPA-FRIDKRKAIGPDEQELAENPR 291

Query: 306 SRSAKLRAGMRT 317
           SRSAKLR  +RT
Sbjct: 292 SRSAKLRVAIRT 303


>gi|83942761|ref|ZP_00955222.1| S-adenosyl-methyltransferase MraW [Sulfitobacter sp. EE-36]
 gi|83846854|gb|EAP84730.1| S-adenosyl-methyltransferase MraW [Sulfitobacter sp. EE-36]
          Length = 330

 Score =  270 bits (691), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 143/300 (47%), Positives = 192/300 (64%), Gaps = 5/300 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78
           H PVLL  ++A + P  G+  LD TFGAGGY+R     G+  V+A+DRDP A    Q   
Sbjct: 12  HTPVLLRPLLAAVAPVSGR-WLDGTFGAGGYTRGLLDAGAAQVVAVDRDPLAFEMAQAWA 70

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138
            DY ++  + +  FS++ DY  D  +DG+V DLGVSSMQ+D  +RGFSF + GPLDMRMS
Sbjct: 71  GDYGDRIVMQRGVFSKMDDYAQD--LDGIVLDLGVSSMQLDLAERGFSFMRDGPLDMRMS 128

Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198
             G SA+D+VN+A  + +  IL   GEE+ + RIA AIV+ R+ AP  TT  L+ L++  
Sbjct: 129 QDGPSAADIVNEAEEEVIANILFQYGEERASRRIAKAIVRAREEAPITTTLALAGLVESC 188

Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258
           +  SK  + HPATRSFQALRI VNNE  EL  GL +AE+ALK GG L VV+FHS+EDR+V
Sbjct: 189 LPRSKPGQSHPATRSFQALRIAVNNEYGELFNGLMAAERALKPGGQLAVVTFHSVEDRMV 248

Query: 259 KKFFASRSGKVMAVRHMIPSNAHPAV-FQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           K+F  +R+G         P    P   F+ + +K + P  +++  N RSRSAKLR  +RT
Sbjct: 249 KRFLTARAGAGGNANRFAPEIEAPEPQFKILKRKAIGPDAQELEENPRSRSAKLRVAIRT 308


>gi|312112902|ref|YP_004010498.1| S-adenosyl-methyltransferase MraW [Rhodomicrobium vannielii ATCC
           17100]
 gi|311218031|gb|ADP69399.1| S-adenosyl-methyltransferase MraW [Rhodomicrobium vannielii ATCC
           17100]
          Length = 340

 Score =  270 bits (691), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 144/306 (47%), Positives = 201/306 (65%), Gaps = 10/306 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVS--CGQE 76
           H+PVLL +V+  L+P  G+  +D TFGAGGY+R+  +    +V+ LDRDP A++  C  E
Sbjct: 31  HIPVLLREVLEALHPGVGERFIDGTFGAGGYARAILEAAHCDVLGLDRDPTAIAGACALE 90

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           T   +  +  L +  FS+++D     G   +DGVV DLGVSSMQ+D  +RGFSF + GPL
Sbjct: 91  TA--FAGRLKLAETPFSEMEDAAHGIGWDALDGVVLDLGVSSMQLDEAERGFSFMRDGPL 148

Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           DMRMS SG+SA+DVVN      +  IL   GEE+++  IA AIVK R++APF+ T  L++
Sbjct: 149 DMRMSSSGLSAADVVNTYEKDAIADILYTFGEERRSRAIAAAIVKDRETAPFERTGQLAA 208

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           LI + +     +  HPATRSFQALR++VN+E+ EL + L +AE+ LK GG L+VVSFHSL
Sbjct: 209 LIARVLGHKPGDPKHPATRSFQALRLYVNDELGELTRALEAAERLLKPGGRLVVVSFHSL 268

Query: 254 EDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           EDR+VK+F A RSGK       IP   ++    F+   +  V P +++VA N R+RSA+L
Sbjct: 269 EDRIVKRFLAERSGKRAKASRYIPDAGDSTAPTFELRDRHGVEPGEDEVAANPRARSARL 328

Query: 312 RAGMRT 317
           R  +RT
Sbjct: 329 RWAVRT 334


>gi|83954000|ref|ZP_00962721.1| S-adenosyl-methyltransferase MraW [Sulfitobacter sp. NAS-14.1]
 gi|83841945|gb|EAP81114.1| S-adenosyl-methyltransferase MraW [Sulfitobacter sp. NAS-14.1]
          Length = 333

 Score =  270 bits (691), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 143/300 (47%), Positives = 192/300 (64%), Gaps = 5/300 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78
           H PVLL  ++A + P  G+  LD TFGAGGY+R     G+  V+A+DRDP A    Q   
Sbjct: 15  HTPVLLRPLLAAVAPVSGR-WLDGTFGAGGYTRGLLDAGAAQVVAVDRDPLAFEMAQAWA 73

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138
            DY ++  + +  FS++ DY  D  +DG+V DLGVSSMQ+D  +RGFSF + GPLDMRMS
Sbjct: 74  GDYGDRIVMQRGVFSKMDDYAQD--LDGIVLDLGVSSMQLDLAERGFSFMRDGPLDMRMS 131

Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198
             G SA+D+VN+A  + +  IL   GEE+ + RIA AIV+ R+ AP  TT  L+ L++  
Sbjct: 132 QDGPSAADIVNEAEEEVIANILFQYGEERASRRIAKAIVRAREEAPITTTLALAGLVEGC 191

Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258
           +  SK  + HPATRSFQALRI VNNE  EL  GL +AE+ALK GG L VV+FHS+EDR+V
Sbjct: 192 LPRSKPGQSHPATRSFQALRIAVNNEYGELFNGLMAAERALKPGGQLAVVTFHSVEDRMV 251

Query: 259 KKFFASRSGKVMAVRHMIPSNAHPAV-FQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           K+F  +R+G         P    P   F+ + +K + P  +++  N RSRSAKLR  +RT
Sbjct: 252 KRFLTARAGAGGNANRFAPEIEAPEPQFKILKRKAIGPDAQELEENPRSRSAKLRVAIRT 311


>gi|254486962|ref|ZP_05100167.1| S-adenosyl-methyltransferase MraW [Roseobacter sp. GAI101]
 gi|214043831|gb|EEB84469.1| S-adenosyl-methyltransferase MraW [Roseobacter sp. GAI101]
          Length = 330

 Score =  270 bits (690), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 144/311 (46%), Positives = 198/311 (63%), Gaps = 5/311 (1%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRD 67
           M++A       H PVLL  ++A + P  G+  LD TFGAGGY+R     G++ VIA+DRD
Sbjct: 1   MTAASDTPSAPHTPVLLRPLLAAVAPVYGR-WLDGTFGAGGYTRGLLDAGADQVIAVDRD 59

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
           P A         +Y ++  + Q  FS++ +Y   + +DGVV DLGVSSMQ+D  +RGFSF
Sbjct: 60  PLAFEMAASWAGEYGDRLIMQQGVFSRMDEYA--QNLDGVVLDLGVSSMQLDLAERGFSF 117

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
            + GPLDMRMS  G SA+D+VN+A  + +  IL   GEE+ + RIA AIV++R+ AP  T
Sbjct: 118 MRDGPLDMRMSQEGPSAADIVNEAEEEIIANILFQFGEERASRRIAKAIVRQREEAPITT 177

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T +L+ L++  +  SK  + HPATRSFQALRI VNNE  EL +GL +AE+ALK GG L V
Sbjct: 178 TLELARLVESCLPRSKPGQSHPATRSFQALRIAVNNEYGELFEGLMAAERALKPGGQLAV 237

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPS-NAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+FHS+EDR+VK+F  +R+G         P   + P  F    +K + P  +++  N RS
Sbjct: 238 VTFHSVEDRMVKRFLTARAGAGGNANRFAPEMESEPPQFIVKKRKAIGPDAQELEENPRS 297

Query: 307 RSAKLRAGMRT 317
           RSAKLR  +RT
Sbjct: 298 RSAKLRVAIRT 308


>gi|149201994|ref|ZP_01878968.1| S-adenosyl-methyltransferase MraW [Roseovarius sp. TM1035]
 gi|149145042|gb|EDM33071.1| S-adenosyl-methyltransferase MraW [Roseovarius sp. TM1035]
          Length = 330

 Score =  270 bits (690), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 147/300 (49%), Positives = 190/300 (63%), Gaps = 5/300 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETM 78
           H+PVLL  +IA + P  G V LD T GAGGY+R+    G++ VI +DRDP A    Q   
Sbjct: 13  HIPVLLRPLIAAVAPVQG-VWLDGTLGAGGYARALLDAGADQVIGVDRDPLAHDMAQGWG 71

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138
            +Y ++  L    F+Q+ DY  D  +DGVV DLGVSSMQ+D  +RGFSF K GPLDMRMS
Sbjct: 72  AEYGDRLRLVLGNFAQMDDYATD--LDGVVLDLGVSSMQLDLAERGFSFMKDGPLDMRMS 129

Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198
             G SA+D+VN A   DL  IL + GEE+ + RIA AIVK R  AP +TT  L+ LI++ 
Sbjct: 130 QEGPSAADLVNTAEESDLADILYLYGEERASRRIARAIVKARTEAPIETTLHLAGLIERC 189

Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258
           +  SK  + H ATRSFQA+RI VN+E   L  GL +AE+ALK GG L VV+FHS+EDR+V
Sbjct: 190 LPRSKPGQAHAATRSFQAIRIAVNDEYGALIAGLEAAERALKEGGQLAVVTFHSIEDRIV 249

Query: 259 KKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           K+F  +RSG      RH          F   ++K + P  E++A N R+RSA+LR   RT
Sbjct: 250 KRFLTARSGGGGTGSRHAPEITREEPQFTLKSRKAIGPDDEELAVNPRARSARLRVATRT 309


>gi|294085909|ref|YP_003552669.1| S-adenosyl-methyltransferase MraW [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292665484|gb|ADE40585.1| S-adenosyl-methyltransferase MraW [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 334

 Score =  269 bits (687), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 149/315 (47%), Positives = 192/315 (60%), Gaps = 17/315 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78
           H  VLL +V+  L P  GKV LDATFG GGYSR+        VIA+DRDP A++ GQ+ +
Sbjct: 7   HQSVLLNEVVDALRPTNGKVYLDATFGNGGYSRALLDAADCTVIAIDRDPDAIARGQKMV 66

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGV---------------DGVVFDLGVSSMQIDCGDR 123
            +YK +F+L +  FS++Q  V    V               DG  FDLGV S Q+D  DR
Sbjct: 67  AEYKPRFTLVEGCFSEMQSLVQSALVSTGSGSTSHADVPVLDGAAFDLGVCSTQLDQADR 126

Query: 124 GFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           GFSF++ GPLDMRMS SGISA+D+V      D+ +IL   GEEK + RIA AIVK R   
Sbjct: 127 GFSFRQDGPLDMRMSQSGISAADIVMTHEEHDIAQILWEYGEEKASRRIAKAIVKARSET 186

Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
              +T  L+++I   +   +  +I PATRSFQALRI+VN E++EL   L ++E  LK GG
Sbjct: 187 AISSTSQLAAIIHSVMPAKRPGQIDPATRSFQALRIYVNRELDELKSALTTSEAMLKPGG 246

Query: 244 LLIVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           +L VVSFHSLEDR+VK+F ASRS       RH  PSN     F+ +T+K +     +   
Sbjct: 247 ILAVVSFHSLEDRIVKRFLASRSQIASQPSRHRPPSNGPAPTFELLTRKALQAGTRERED 306

Query: 303 NRRSRSAKLRAGMRT 317
           N R+RSAKLR  MRT
Sbjct: 307 NSRARSAKLRVAMRT 321


>gi|295688554|ref|YP_003592247.1| S-adenosyl-methyltransferase MraW [Caulobacter segnis ATCC 21756]
 gi|295430457|gb|ADG09629.1| S-adenosyl-methyltransferase MraW [Caulobacter segnis ATCC 21756]
          Length = 311

 Score =  268 bits (686), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 146/306 (47%), Positives = 205/306 (66%), Gaps = 17/306 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+ VLL++V+  L   PG V++D TFGAGGY+R+    G++VI  DRDP        T++
Sbjct: 6   HISVLLDEVVEALGAGPGDVVVDGTFGAGGYTRAVLATGASVIGFDRDP--------TVQ 57

Query: 80  DYKE-----QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
            + E     +F L QA FS++ D +  + VDGV+ DLGVSSMQ+D  +RGFSF + GPLD
Sbjct: 58  RFTEGLPADRFRLIQARFSEMLDELGPESVDGVMLDLGVSSMQLDQAERGFSFMRDGPLD 117

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRM  +G +A+D+VN  +  +L RIL + GEE  + RIA  I++RR+  PF+ T DL+ +
Sbjct: 118 MRMGDTGPTAADLVNTLDHAELARILYVYGEEHASRRIASFILRRREERPFERTLDLAEV 177

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           I++ V   K  ++HPATRSFQ LRI VN+E+ EL  GL +AE+ LK GG L+VV+FHSLE
Sbjct: 178 IERAVGGRKGAKVHPATRSFQGLRIAVNDELGELEAGLAAAERVLKPGGRLVVVTFHSLE 237

Query: 255 DRLVKKFFASRSGKV-MAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           DR+VK F A R+G+     RH  P  + A P+ FQ I+ K + P + ++A N R+RS+KL
Sbjct: 238 DRIVKAFLAERAGRTPGGSRHAPPVQAGAQPS-FQLISNKAIAPGEAELAANPRARSSKL 296

Query: 312 RAGMRT 317
           RA +RT
Sbjct: 297 RAAVRT 302


>gi|158426170|ref|YP_001527462.1| S-adenosyl-methyltransferase MraW [Azorhizobium caulinodans ORS
           571]
 gi|263446764|sp|A8HZ68|RSMH_AZOC5 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|158333059|dbj|BAF90544.1| methyltransferase [Azorhizobium caulinodans ORS 571]
          Length = 346

 Score =  268 bits (686), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 149/327 (45%), Positives = 202/327 (61%), Gaps = 8/327 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETM 78
           H+PV+L +V+A L P      LD TFGAGGY+R+  +  +  VIA+DRDP A++ GQ  +
Sbjct: 19  HLPVMLAEVLAHLAPKDAGTCLDGTFGAGGYTRAILEAANGRVIAIDRDPTAIAGGQALV 78

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
            +   + +L    FS L     D G   +DGVV D+GVSSMQ+D  DRGFSF++ GPLDM
Sbjct: 79  EETGGRLTLVHERFSHLDQVAQDLGAAPLDGVVLDIGVSSMQLDEADRGFSFRRDGPLDM 138

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RM+  G SA+D+V   +  +L  ++  LGEE+ + +IA AIV  R  +P   T  L+ ++
Sbjct: 139 RMANDGPSAADLVADLDEVELAHVIWTLGEERFSRQIARAIVNARAESPITRTTQLADIV 198

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
            K V+ +K   +HPATR+FQALRI VN E++EL   L +AE+ LK GG L+VV+FHSLED
Sbjct: 199 SKVVW-AKPGEMHPATRTFQALRIAVNEELQELVGALAAAERVLKPGGRLVVVTFHSLED 257

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           R+VK F + RS    A RHM  +      F+ + K  V P  ++VA N R+RSAKLRA  
Sbjct: 258 RIVKNFLSHRSKAPSASRHMPQAEGPAPSFRLVAKGAVEPGSDEVAGNPRARSAKLRAAE 317

Query: 316 RTVERSIEDDSFVHLPRLPT-LSQFRG 341
           RT   +  D     L  LP  LSQ RG
Sbjct: 318 RTDAPAHPDGDLAGL--LPADLSQRRG 342


>gi|302383891|ref|YP_003819714.1| S-adenosyl-methyltransferase MraW [Brevundimonas subvibrioides ATCC
           15264]
 gi|302194519|gb|ADL02091.1| S-adenosyl-methyltransferase MraW [Brevundimonas subvibrioides ATCC
           15264]
          Length = 317

 Score =  268 bits (685), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 146/309 (47%), Positives = 190/309 (61%), Gaps = 17/309 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H PVLL +V+  L P  G VI+DATFGAGGY+R+    G+ VIALDRDP           
Sbjct: 6   HAPVLLAEVLEALAPKAGDVIIDATFGAGGYTRAILATGATVIALDRDPTVQPHADAVAN 65

Query: 80  DYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
           D+  +F+L +  FS L D   D G   +DG+VFD+GVSSMQ+D  +RGFSF + GPLDMR
Sbjct: 66  DHPGRFTLVRTPFSGLADAFADSGAARLDGIVFDIGVSSMQLDEAERGFSFMRDGPLDMR 125

Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
           MS  G SA+D+VN  +   L  IL   G+E+Q+ RIA AI++RR   PF  T DL+ +++
Sbjct: 126 MSRDGDSAADIVNTWDHGPLAHILKQYGDERQSGRIATAILRRRTVQPFTRTLDLADVVE 185

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
           + +   +    HPATR+FQALRI VN+E+ EL  GL++AE AL  GG L VV+FHSLEDR
Sbjct: 186 RALGGRRGAPTHPATRTFQALRIAVNDELGELTAGLQAAEAALSPGGRLAVVTFHSLEDR 245

Query: 257 LVKKFFASRSGKV--------MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           +VK F   R+G          MAV    PS      F    K      + ++A N R+RS
Sbjct: 246 IVKAFLTERTGNAPGGSRHAPMAVETRKPS------FTLSFKGAREAGEAELAANPRARS 299

Query: 309 AKLRAGMRT 317
           AKLRA +RT
Sbjct: 300 AKLRAAVRT 308


>gi|42558979|sp|Q89FT9|RSMH_BRAJA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 329

 Score =  268 bits (685), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 154/319 (48%), Positives = 203/319 (63%), Gaps = 7/319 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETM 78
           H+PVL  + I  L P  G + +DATFGAGGYSR+   + G+ +IA+DRD  A++ G E +
Sbjct: 6   HIPVLGREAIDHLAPREGGIYVDATFGAGGYSRAILDVPGTRLIAIDRDRTAIAGGAELV 65

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV---SSMQIDCGDRGFSFQKSGPLDM 135
                + +L +  FS L D    +GVD V   +     SSMQ+D   RGFSF+  GPLDM
Sbjct: 66  ERSAGRLTLVEDRFSHLADVCAAQGVDAVDGVVMDVGVSSMQLDQAGRGFSFRLDGPLDM 125

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RM  +G +A+DVV +A+  DL  I+ +LGEE+ + R+A AIV  RQ  PF TT+ L+ L+
Sbjct: 126 RMGQAGPTAADVVARASEADLADIIYLLGEERHSRRVARAIVADRQETPFTTTRALADLV 185

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
            + V  SK   IHPATR+FQALRIFVN E+EEL   L +AE+ LK GG L+VVSFHSLED
Sbjct: 186 GRVVR-SKPGDIHPATRTFQALRIFVNEELEELQTALTAAERVLKPGGRLVVVSFHSLED 244

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPA-VFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           R+VK F A RS      RH+ P  A  A  FQ +T++ VV  +++VA N R+RSAKLRA 
Sbjct: 245 RIVKNFLAERSKTGGGSRHL-PEVAQTAPSFQLLTRRPVVAGEDEVAHNPRARSAKLRAA 303

Query: 315 MRTVERSIEDDSFVHLPRL 333
            RT   + +DD     PRL
Sbjct: 304 ERTSAPAHKDDQSSSWPRL 322


>gi|27381721|ref|NP_773250.1| S-adenosyl-methyltransferase MraW [Bradyrhizobium japonicum USDA
           110]
 gi|27354890|dbj|BAC51875.1| S-adenosyl-methyltransferase [Bradyrhizobium japonicum USDA 110]
          Length = 387

 Score =  268 bits (685), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 154/319 (48%), Positives = 203/319 (63%), Gaps = 7/319 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETM 78
           H+PVL  + I  L P  G + +DATFGAGGYSR+   + G+ +IA+DRD  A++ G E +
Sbjct: 64  HIPVLGREAIDHLAPREGGIYVDATFGAGGYSRAILDVPGTRLIAIDRDRTAIAGGAELV 123

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV---SSMQIDCGDRGFSFQKSGPLDM 135
                + +L +  FS L D    +GVD V   +     SSMQ+D   RGFSF+  GPLDM
Sbjct: 124 ERSAGRLTLVEDRFSHLADVCAAQGVDAVDGVVMDVGVSSMQLDQAGRGFSFRLDGPLDM 183

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RM  +G +A+DVV +A+  DL  I+ +LGEE+ + R+A AIV  RQ  PF TT+ L+ L+
Sbjct: 184 RMGQAGPTAADVVARASEADLADIIYLLGEERHSRRVARAIVADRQETPFTTTRALADLV 243

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
            + V  SK   IHPATR+FQALRIFVN E+EEL   L +AE+ LK GG L+VVSFHSLED
Sbjct: 244 GRVVR-SKPGDIHPATRTFQALRIFVNEELEELQTALTAAERVLKPGGRLVVVSFHSLED 302

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPA-VFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           R+VK F A RS      RH+ P  A  A  FQ +T++ VV  +++VA N R+RSAKLRA 
Sbjct: 303 RIVKNFLAERSKTGGGSRHL-PEVAQTAPSFQLLTRRPVVAGEDEVAHNPRARSAKLRAA 361

Query: 315 MRTVERSIEDDSFVHLPRL 333
            RT   + +DD     PRL
Sbjct: 362 ERTSAPAHKDDQSSSWPRL 380


>gi|315498857|ref|YP_004087661.1| s-adenosyl-methyltransferase mraw [Asticcacaulis excentricus CB 48]
 gi|315416869|gb|ADU13510.1| S-adenosyl-methyltransferase MraW [Asticcacaulis excentricus CB 48]
          Length = 327

 Score =  268 bits (685), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 134/303 (44%), Positives = 200/303 (66%), Gaps = 5/303 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+ VLL +VIA + P  G++++D TFGAGGY+R+F   G+ VIA DRD       +    
Sbjct: 6   HISVLLNEVIAAVAPESGRLVVDGTFGAGGYTRAFLSRGAEVIAFDRDARVQPFVEAVRG 65

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
           D+ ++F      FS++   + + GVD    +V D+GVSSMQ+D  DRGFSF + GPLDMR
Sbjct: 66  DFGDRFRFVNRPFSEMAAGLAELGVDRVDAIVLDIGVSSMQLDEADRGFSFMRDGPLDMR 125

Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
           M+  G+SA+D+VN+    D+  I+ + GEE ++  IA AIVKRR+ APF+ T DL+++++
Sbjct: 126 MAVDGLSAADIVNEWAEADIAHIIWLYGEEHRSRAIAAAIVKRRKEAPFERTLDLAAVVE 185

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
           K V   + +++HPAT++FQALRI VN+E+ EL   L ++E+ LK  G+L VV+FHSLEDR
Sbjct: 186 KAVGGRRGDKVHPATKTFQALRIAVNDELGELESALEASERLLKPEGVLAVVTFHSLEDR 245

Query: 257 LVKKFFASRSGKV-MAVRHMIPSNAHPA-VFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           +VK F A R+G+     RH       PA  ++  + + + P++ +++ N R+RSAKLRA 
Sbjct: 246 MVKSFLAERAGRTPSGSRHAPQIQTGPAPTYRLDSTRAIAPSEAELSGNPRARSAKLRAA 305

Query: 315 MRT 317
            RT
Sbjct: 306 RRT 308


>gi|316933178|ref|YP_004108160.1| S-adenosyl-methyltransferase MraW [Rhodopseudomonas palustris DX-1]
 gi|315600892|gb|ADU43427.1| S-adenosyl-methyltransferase MraW [Rhodopseudomonas palustris DX-1]
          Length = 332

 Score =  267 bits (683), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 156/330 (47%), Positives = 200/330 (60%), Gaps = 10/330 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAV 71
           + H+   HVPVL  + + LL P  G V +D TFGAGGY+R   +  GS VIA+DRDP A+
Sbjct: 1   MSHSDSRHVPVLGPEAVGLLAPRDGGVYVDGTFGAGGYTRLILQTAGSRVIAIDRDPTAI 60

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQ 128
             G   + +   + +L Q  FS L D    +G   VDGVV D+GVSSMQ+D  +RGFSF+
Sbjct: 61  VGGAGLVAEAGGRLTLVQDRFSNLADVCAAQGAATVDGVVIDIGVSSMQLDQAERGFSFR 120

Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             GPLDMRM   G SA+DVV +A+  DL  I+ I GEE+ +  +A AIV  R   P  TT
Sbjct: 121 FDGPLDMRMGRDGPSAADVVARASETDLANIIYIFGEERYSRHVARAIVAARSETPITTT 180

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           + L+ ++ K V  +K   IHPATR+FQ LRIFVN E++EL Q L +AE+ LK GG L VV
Sbjct: 181 KALADIVAKVVR-AKPGEIHPATRTFQGLRIFVNEELDELHQALDAAERVLKPGGRLAVV 239

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPA-VFQSITKKVVVPTQEDVAFNRRSR 307
           SFHSLEDR+VK F A RS      RH+ P  A  A  F  + K+ +V    +VA N R+R
Sbjct: 240 SFHSLEDRIVKTFLAERSKTGGGSRHL-PEVAQAAPSFTLLAKRPIVAGDAEVAANPRAR 298

Query: 308 SAKLRAGMRTVERSIEDDSFVHLPRLPTLS 337
           SAKLR   RT        +   LP  PTL+
Sbjct: 299 SAKLRGAERT---EAPAHAAGDLPGWPTLA 325


>gi|218532980|ref|YP_002423796.1| S-adenosyl-methyltransferase MraW [Methylobacterium
           chloromethanicum CM4]
 gi|263456414|sp|B7KU77|RSMH_METC4 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|218525283|gb|ACK85868.1| S-adenosyl-methyltransferase MraW [Methylobacterium
           chloromethanicum CM4]
          Length = 353

 Score =  267 bits (682), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 144/305 (47%), Positives = 193/305 (63%), Gaps = 7/305 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           HVPVLL +V+A L+     + +D TFGAGGY+R+  + G  V  IA+DRDP A+  G + 
Sbjct: 22  HVPVLLAEVLAALSLDRPGLAVDGTFGAGGYTRALLEAGPEVRVIAIDRDPTAIRGGADL 81

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +  +  +  L Q  F +L   + D+     D VV D+GVSSMQID   RGFSF++ GPLD
Sbjct: 82  VNAFGGRLRLVQGRFGELDTLIADQNEAQADWVVLDIGVSSMQIDEAQRGFSFRQDGPLD 141

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRM   G SA+D+VN      L  IL   GEE+++  +A AIV+ R+ AP  TT  L+ L
Sbjct: 142 MRMGGEGPSAADLVNGEEETTLADILYHFGEERRSRAVARAIVEARRRAPIVTTAQLADL 201

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           +   V     + IHPATRSFQ LRI VN+E+ EL +GL +AE+ LK GG L VV+FHSLE
Sbjct: 202 VAGVVRPEPGSPIHPATRSFQGLRIAVNDELGELVRGLHAAERVLKPGGRLAVVTFHSLE 261

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           DR+VK+FF++RSG+       +P    PA   F+ +TK  V+P++ +   N RSRSAKLR
Sbjct: 262 DRIVKQFFSARSGRAAQASRHVPGVERPAPKSFKLVTKGPVLPSEAETDVNPRSRSAKLR 321

Query: 313 AGMRT 317
           AG RT
Sbjct: 322 AGERT 326


>gi|39936600|ref|NP_948876.1| S-adenosyl-methyltransferase MraW [Rhodopseudomonas palustris
           CGA009]
 gi|42559427|sp|P60398|RSMH_RHOPA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|39650456|emb|CAE28979.1| Bacterial methyltransferase [Rhodopseudomonas palustris CGA009]
          Length = 332

 Score =  267 bits (682), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 154/327 (47%), Positives = 201/327 (61%), Gaps = 18/327 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETM 78
           H+PVL  + + LL P  G + +D TFGAGGY+R   +  GS VIA+DRDP A++ G + +
Sbjct: 8   HIPVLGPEAVGLLAPRAGGIYVDGTFGAGGYTRLILETAGSRVIAIDRDPSAIAGGADLV 67

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
            +   + +L Q  FS L D    +G   VDGVV D+GVSSMQ+D  +RGFSF+  GPLDM
Sbjct: 68  TEAGGRLTLVQDRFSNLADVCAAQGAATVDGVVMDIGVSSMQLDQAERGFSFRFDGPLDM 127

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RM   G SA+DVV +A+  DL  I+ I GEE+ +  +A AIV  R   P  TT+ L+ ++
Sbjct: 128 RMGRDGPSAADVVARASETDLANIIYIFGEERYSRHVARAIVAARSETPITTTKALADIV 187

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
            K V  +K   IHPATR+FQ LRIFVN E++EL Q L +AE+ LK  G L VVSFHSLED
Sbjct: 188 AKVVR-AKPGEIHPATRTFQGLRIFVNEELDELHQALDAAERVLKPSGRLAVVSFHSLED 246

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPA-VFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           R+VK F A RS      RH+ P  A  A  F  ++K+ +V    +VA N R+RSAKLR  
Sbjct: 247 RIVKTFLAERSKTGGGSRHL-PEVAQAAPSFTLLSKRPIVAGDAEVAANPRARSAKLRGA 305

Query: 315 MRTVERSIEDDSFVH----LPRLPTLS 337
            RT       +S  H    LP  PTL+
Sbjct: 306 ERT-------ESPAHAAGDLPGWPTLA 325


>gi|126461541|ref|YP_001042655.1| S-adenosyl-methyltransferase MraW [Rhodobacter sphaeroides ATCC
           17029]
 gi|262825567|sp|A3PHR7|RSMH_RHOS1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|126103205|gb|ABN75883.1| S-adenosyl-methyltransferase MraW [Rhodobacter sphaeroides ATCC
           17029]
          Length = 331

 Score =  267 bits (682), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 142/300 (47%), Positives = 194/300 (64%), Gaps = 4/300 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETM 78
           H+PVLL  ++A + P  G   LD TFGAGGY+R   + G++ VI +DRDP A+       
Sbjct: 11  HIPVLLRPLLAAVAPVEG-TWLDGTFGAGGYARGLLEAGADRVIGVDRDPLALKMASGWA 69

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138
            DY ++  L   TFSQL  +     +DGVV DLGVSSMQ+D  +RGFSFQK GPLDMRMS
Sbjct: 70  GDYGDRLRLVAGTFSQLDSHA-GAPLDGVVLDLGVSSMQLDLAERGFSFQKDGPLDMRMS 128

Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198
             G SA+D+VN A+ + L  IL   GEE+ + RIA AIV+ R +AP   T  L+ ++ + 
Sbjct: 129 QEGESAADLVNTASEESLADILYHYGEERASRRIARAIVEARAAAPITRTLALAEIVARC 188

Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258
           +   K  ++HPATRSFQA+RI VN E  EL +GL +AE+AL+ GG L VV+FHSLEDR+V
Sbjct: 189 LPRPKPGQMHPATRSFQAIRIAVNAEFSELVEGLEAAERALRPGGRLAVVTFHSLEDRIV 248

Query: 259 KKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           K+F   RS G+    R+   + A+   F    ++ + P + ++A N R+RSA+LR G+RT
Sbjct: 249 KRFLQLRSGGEGQGNRYAPETRAYAPRFTLPLRRAISPDEAELAENPRARSARLRVGVRT 308


>gi|254512159|ref|ZP_05124226.1| S-adenosyl-methyltransferase MraW [Rhodobacteraceae bacterium
           KLH11]
 gi|221535870|gb|EEE38858.1| S-adenosyl-methyltransferase MraW [Rhodobacteraceae bacterium
           KLH11]
          Length = 330

 Score =  266 bits (681), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 149/311 (47%), Positives = 192/311 (61%), Gaps = 5/311 (1%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRD 67
           M+ A   +   H+PVLL  ++A + P  G V LD TFGAGGY+R   + G+  VI +DRD
Sbjct: 1   MAGAQTSSDKPHIPVLLRPLLAAVAPVSG-VWLDGTFGAGGYTRGLLEAGAEKVIGVDRD 59

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
           P A     +    Y ++  + Q  FS + +Y  D  +DGVV DLGVSSMQ+D  +RGFSF
Sbjct: 60  PLAFEMAADWAGGYGDRLVMQQGVFSCMDEYARD--LDGVVLDLGVSSMQLDQAERGFSF 117

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
            K GPLDMRMS  G SA+D+VN+A    L  IL   GEE+ + RIA AIV+ R   P  T
Sbjct: 118 MKDGPLDMRMSQQGDSAADLVNEATEAQLADILFHYGEERASRRIARAIVRARAEDPITT 177

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T  L+ +I+  +   K  + HPATRSFQ LRI VN E EEL QGL +AE+ALK GG L V
Sbjct: 178 TLRLAEIIESCLPRPKPGQSHPATRSFQGLRIAVNAEYEELFQGLMAAERALKPGGQLAV 237

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHP-AVFQSITKKVVVPTQEDVAFNRRS 306
           V+FHS+EDR+VK+FF SR+GK        P  A     F   T+K V P  +++  N R+
Sbjct: 238 VTFHSIEDRMVKRFFQSRAGKTGRANRYAPEMAQEQPQFTLKTRKAVGPDDQELEENPRA 297

Query: 307 RSAKLRAGMRT 317
           RSAKLR  +RT
Sbjct: 298 RSAKLRVAVRT 308


>gi|197105793|ref|YP_002131170.1| S-adenosyl-methyltransferase [Phenylobacterium zucineum HLK1]
 gi|262824815|sp|B4RFS8|RSMH_PHEZH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|196479213|gb|ACG78741.1| S-adenosyl-methyltransferase [Phenylobacterium zucineum HLK1]
          Length = 310

 Score =  266 bits (681), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 146/305 (47%), Positives = 200/305 (65%), Gaps = 15/305 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           HVPVL+++V+  L PAPG+ I+D TFGAGGY+R+    G++V+A DRDP        T+R
Sbjct: 5   HVPVLMQEVVDALAPAPGRTIIDGTFGAGGYTRAILATGASVVAFDRDP--------TVR 56

Query: 80  DYKE-----QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
            + E     +F L +A FS++ + + +   DGV  DLGVSSMQ+D  +RGFSF + GPLD
Sbjct: 57  RFAEGLPADRFRLVEARFSEMDEVLGEGAADGVALDLGVSSMQLDQAERGFSFMQDGPLD 116

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRM  SG +A+D+VN A   +L RI  + GEE+++ RIA AI +RR+  PF  T +L+  
Sbjct: 117 MRMGASGPTAADLVNTAEPAELARIFFVYGEERESRRIARAIARRREEQPFTRTLELADF 176

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           I+K +   +  +IHPATR+FQ LRI VN E+ EL  GL +AE+ LK  G L VV+FHSLE
Sbjct: 177 IEKALGGRRGAKIHPATRAFQGLRIAVNEELSELEAGLAAAERVLKPEGRLCVVTFHSLE 236

Query: 255 DRLVKKFFASRSGKVMA-VRHMIPSNAHPAV-FQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           DR+VK F + R+G+  A  RH  P    PA  FQ +      P++ +VA N R+RSAKLR
Sbjct: 237 DRIVKSFLSVRAGRTPAGSRHAPPVRQGPAPSFQLLFNGARGPSETEVAANPRARSAKLR 296

Query: 313 AGMRT 317
           A +RT
Sbjct: 297 AAVRT 301


>gi|262831532|sp|Q133W3|RSMH_RHOPS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 332

 Score =  266 bits (681), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 151/322 (46%), Positives = 198/322 (61%), Gaps = 8/322 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQETM 78
           H+PVL  + + LL P  G V +D TFGAGGY+R   +   + VIA+DRD  A++ G + +
Sbjct: 8   HIPVLGVEAVGLLAPRDGGVYVDGTFGAGGYTRLILEAADTRVIAIDRDRNAIADGFDLV 67

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           +    + +L +  FS L D    +G   VDGVV D+GVSSMQ+D  DRGFSF+  GPLDM
Sbjct: 68  QSTSGRLTLVEDRFSNLADVCEAQGAESVDGVVMDIGVSSMQVDQADRGFSFRLDGPLDM 127

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RM   G +A+DVV  A+  DL  I+ I GEEK +  +A AI+  R+ AP  TT+ L+ ++
Sbjct: 128 RMGNDGPTAADVVAHASEADLANIIYIFGEEKYSRHVARAIIAARKDAPIVTTKALADIV 187

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
             TV  SK  +IHPATR+FQALRIFVN E++EL Q L +AE+ LK GG L VVSFHSLED
Sbjct: 188 -ATVVRSKPGQIHPATRTFQALRIFVNEELDELYQALSAAERVLKPGGRLAVVSFHSLED 246

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           R+VK F   RS      RH+         F  +TK+ +V    +VA N R+RSAKLR   
Sbjct: 247 RIVKTFLGDRSRTGGGSRHLPELTQAAPSFTVLTKRPIVAGDAEVAANPRARSAKLRGAE 306

Query: 316 RTVERSIEDDSFVHLPRLPTLS 337
           RT   +   D    LP  PTL+
Sbjct: 307 RTAAPAHRPDD---LPGWPTLA 325


>gi|91977868|ref|YP_570527.1| methyltransferase [Rhodopseudomonas palustris BisB5]
 gi|91684324|gb|ABE40626.1| methyltransferase [Rhodopseudomonas palustris BisB5]
          Length = 398

 Score =  266 bits (681), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 151/322 (46%), Positives = 198/322 (61%), Gaps = 8/322 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQETM 78
           H+PVL  + + LL P  G V +D TFGAGGY+R   +   + VIA+DRD  A++ G + +
Sbjct: 74  HIPVLGVEAVGLLAPRDGGVYVDGTFGAGGYTRLILEAADTRVIAIDRDRNAIADGFDLV 133

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           +    + +L +  FS L D    +G   VDGVV D+GVSSMQ+D  DRGFSF+  GPLDM
Sbjct: 134 QSTSGRLTLVEDRFSNLADVCEAQGAESVDGVVMDIGVSSMQVDQADRGFSFRLDGPLDM 193

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RM   G +A+DVV  A+  DL  I+ I GEEK +  +A AI+  R+ AP  TT+ L+ ++
Sbjct: 194 RMGNDGPTAADVVAHASEADLANIIYIFGEEKYSRHVARAIIAARKDAPIVTTKALADIV 253

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
             TV  SK  +IHPATR+FQALRIFVN E++EL Q L +AE+ LK GG L VVSFHSLED
Sbjct: 254 -ATVVRSKPGQIHPATRTFQALRIFVNEELDELYQALSAAERVLKPGGRLAVVSFHSLED 312

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           R+VK F   RS      RH+         F  +TK+ +V    +VA N R+RSAKLR   
Sbjct: 313 RIVKTFLGDRSRTGGGSRHLPELTQAAPSFTVLTKRPIVAGDAEVAANPRARSAKLRGAE 372

Query: 316 RTVERSIEDDSFVHLPRLPTLS 337
           RT   +   D    LP  PTL+
Sbjct: 373 RTAAPAHRPDD---LPGWPTLA 391


>gi|86749109|ref|YP_485605.1| methyltransferase [Rhodopseudomonas palustris HaA2]
 gi|123292796|sp|Q2IYL6|RSMH_RHOP2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|86572137|gb|ABD06694.1| methyltransferase [Rhodopseudomonas palustris HaA2]
          Length = 337

 Score =  266 bits (680), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 151/323 (46%), Positives = 202/323 (62%), Gaps = 10/323 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETM 78
           H+PVL  + + LL P  G + LD TFGAGGYSR   +  +  VIA+DRD  A++ G + +
Sbjct: 8   HIPVLGPEAVTLLAPRDGGIYLDGTFGAGGYSRLILEAAATRVIAIDRDRSAIAGGFDLV 67

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           +    + +L +  FS L +    +G   VDGVV D+GVSSMQ+D  DRGFSF++ GPLDM
Sbjct: 68  QGAGGRLTLVEDRFSNLAEVCAAQGAPAVDGVVMDIGVSSMQVDQADRGFSFRQDGPLDM 127

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RM   G +A+DVV +A+  DL  I+ I GEEK +  +A A++  R+ AP  TT+ L+ ++
Sbjct: 128 RMGTDGPTAADVVARASETDLANIIYIFGEEKFSRHVARAVIAARKEAPITTTKALADIV 187

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
              V  +K  +IHPATR+FQALRIFVN E++EL Q L +AE+ LK GG L VV+FHSLED
Sbjct: 188 ASVVR-AKPGQIHPATRTFQALRIFVNEELDELYQALAAAERVLKPGGRLAVVTFHSLED 246

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPA-VFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           R+VK F A RS      RH+ P  A  A  F  +TK+       +VA N R+RSAKLR G
Sbjct: 247 RIVKTFLAERSRVGGGSRHL-PELAQAAPSFTVLTKRPTTAGDAEVAANPRARSAKLRGG 305

Query: 315 MRTVERSIEDDSFVHLPRLPTLS 337
            RT   +   D    LP  PTL+
Sbjct: 306 ERTAAPAHRPDD---LPGWPTLA 325


>gi|163854037|ref|YP_001642080.1| S-adenosyl-methyltransferase MraW [Methylobacterium extorquens PA1]
 gi|263456431|sp|A9VW37|RSMH_METEP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|163665642|gb|ABY33009.1| S-adenosyl-methyltransferase MraW [Methylobacterium extorquens PA1]
          Length = 351

 Score =  266 bits (679), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 144/305 (47%), Positives = 192/305 (62%), Gaps = 7/305 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           HVPVLL +V+A L+     + +D TFGAGGY+R+  + G  V  IA+DRDP A+  G + 
Sbjct: 20  HVPVLLAEVLAALSLDRPGLAVDGTFGAGGYTRALLEAGPEVRVIAIDRDPTAIRGGADL 79

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +     +  L Q  F  L   + D+     D VV D+GVSSMQID   RGFSF++ GPLD
Sbjct: 80  VTASGGRLRLVQGRFGDLDTLIADQDEPQADWVVLDIGVSSMQIDEAQRGFSFRQDGPLD 139

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRM   G SA+D+VN      L  IL   GEE+++  +A AIV+ R+ AP +TT  L+ L
Sbjct: 140 MRMGGEGPSAADLVNGEEETTLADILYHFGEERRSRAVARAIVEARRRAPIETTAQLADL 199

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           +   V     + IHPATRSFQ LRI VN+E+ EL +GL +AE+ LK GG L VV+FHSLE
Sbjct: 200 VAGVVRPEPGSPIHPATRSFQGLRIAVNDELGELVRGLHAAERVLKPGGRLAVVTFHSLE 259

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           DR+VK+FF++RSG+       +P    PA   F+ +TK  V+P++ +   N RSRSAKLR
Sbjct: 260 DRIVKQFFSARSGRAAQASRHVPGVERPAPKSFKLVTKGPVLPSEAETDVNPRSRSAKLR 319

Query: 313 AGMRT 317
           AG RT
Sbjct: 320 AGERT 324


>gi|254564005|ref|YP_003071100.1| S-adenosyl-dependent methyltransferase [Methylobacterium extorquens
           DM4]
 gi|254271283|emb|CAX27295.1| S-adenosyl-dependent methyltransferase [Methylobacterium extorquens
           DM4]
          Length = 351

 Score =  266 bits (679), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 144/305 (47%), Positives = 192/305 (62%), Gaps = 7/305 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           HVPVLL +V+A L+     + +D TFGAGGY+R+  + G  V  IA+DRDP A+  G + 
Sbjct: 20  HVPVLLAEVLAALSLDRPGLAVDGTFGAGGYTRALLEAGPEVRVIAIDRDPTAIRGGADL 79

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +     +  L Q  F  L   + D+     D VV D+GVSSMQID   RGFSF++ GPLD
Sbjct: 80  VTASGGRLRLVQGRFGDLDTLIADQDEAQADWVVLDIGVSSMQIDEAQRGFSFRQDGPLD 139

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRM   G SA+D+VN      L  IL   GEE+++  +A AIV+ R+ AP +TT  L+ L
Sbjct: 140 MRMGGEGPSAADLVNGEEETTLADILYHFGEERRSRAVARAIVEARRRAPIETTAQLADL 199

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           +   V     + IHPATRSFQ LRI VN+E+ EL +GL +AE+ LK GG L VV+FHSLE
Sbjct: 200 VAGVVRPEPGSPIHPATRSFQGLRIAVNDELGELVRGLHAAERVLKPGGRLAVVTFHSLE 259

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           DR+VK+FF++RSG+       +P    PA   F+ +TK  V+P++ +   N RSRSAKLR
Sbjct: 260 DRIVKQFFSARSGRAAQASRHVPGVERPAPKSFKLVTKGPVLPSEAETDVNPRSRSAKLR 319

Query: 313 AGMRT 317
           AG RT
Sbjct: 320 AGERT 324


>gi|323137901|ref|ZP_08072976.1| S-adenosyl-methyltransferase MraW [Methylocystis sp. ATCC 49242]
 gi|322396904|gb|EFX99430.1| S-adenosyl-methyltransferase MraW [Methylocystis sp. ATCC 49242]
          Length = 346

 Score =  266 bits (679), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 158/322 (49%), Positives = 205/322 (63%), Gaps = 8/322 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSNVIALDRDPFAVSCGQETM 78
           HVPVLL +VI  L P PG   LDATFGAGGY+R+      + V+ALDRDP AV  G+  +
Sbjct: 19  HVPVLLREVIDALRPTPGGRYLDATFGAGGYTRAILAHPETRVLALDRDPNAVRDGRPLV 78

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
              + + +L +A FSQL +    +G   +DGVVFD+GVSSMQ D  +RGFSF+  GPLDM
Sbjct: 79  EVARGRLTLVEARFSQLDEVARARGFAPLDGVVFDIGVSSMQFDEAERGFSFRGDGPLDM 138

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RM   G +A+D+VN+A+ + L  IL   GEE+ A RIA AIV  R+ APF +T+ L+ +I
Sbjct: 139 RMEGRGQTAADIVNEADEETLADILYFYGEERAARRIARAIVHDRKLAPFASTRALAEMI 198

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
            + V   +   IHPAT+SFQALRI VN+E+ EL  GL  AE+AL  GG L VV+FHSLED
Sbjct: 199 AR-VAPGRPGDIHPATKSFQALRIAVNDELGELLDGLAGAERALAEGGRLAVVTFHSLED 257

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           R+VK+FFA R G+       +P  A P    F    ++ V PT+E+   N R+RSAKLR 
Sbjct: 258 RIVKQFFAERCGRGETGSRRLPGEAAPPPRSFICEGRQPVAPTREETERNPRARSAKLRF 317

Query: 314 GMRTVERSIE-DDSFVHLPRLP 334
             RT   ++  DD    L RLP
Sbjct: 318 ATRTAGPALPLDDRLARLARLP 339


>gi|221638505|ref|YP_002524767.1| S-adenosyl-methyltransferase MraW [Rhodobacter sphaeroides KD131]
 gi|262825605|sp|B9KNI8|RSMH_RHOSK RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|221159286|gb|ACM00266.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Rhodobacter sphaeroides KD131]
          Length = 331

 Score =  266 bits (679), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 142/300 (47%), Positives = 193/300 (64%), Gaps = 4/300 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETM 78
           H+PVLL  ++A + P  G   LD TFGAGGY+R   + G++ VI +DRDP A+       
Sbjct: 11  HIPVLLRPLLAAVAPVEG-TWLDGTFGAGGYARGLLEAGADRVIGVDRDPLALEMASGWA 69

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138
            DY ++  L   TFSQL  +     +DGVV DLGVSSMQ+D  +RGFSFQK GPLDMRMS
Sbjct: 70  GDYGDRLRLVAGTFSQLDSHA-GAPLDGVVLDLGVSSMQLDLAERGFSFQKDGPLDMRMS 128

Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198
             G SA+D+VN A+ + L  IL   GEE+ + RIA AIV+ R +AP   T  L+ ++ + 
Sbjct: 129 QEGESAADLVNTASEETLADILYHYGEERASRRIARAIVEARAAAPITRTLALAEIVARC 188

Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258
           +   K  ++HPATRSFQA+RI VN E  EL +GL +AE+AL+ GG L VV+FHSLEDR+V
Sbjct: 189 LPRPKPGQMHPATRSFQAIRIAVNAEFSELVEGLEAAERALRPGGRLAVVTFHSLEDRIV 248

Query: 259 KKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           K+F   RS G+    R+   + A    F    ++ + P + ++A N R+RSA+LR G+RT
Sbjct: 249 KRFLQLRSGGEGQGNRYAPETRADAPRFTLPLRRAISPDEAELAENPRARSARLRVGVRT 308


>gi|77462648|ref|YP_352152.1| methyltransferase MraW/YabC [Rhodobacter sphaeroides 2.4.1]
 gi|88909216|sp|Q3J4N3|RSMH_RHOS4 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|77387066|gb|ABA78251.1| methyltransferase MraW/YabC [Rhodobacter sphaeroides 2.4.1]
          Length = 331

 Score =  265 bits (678), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 142/300 (47%), Positives = 193/300 (64%), Gaps = 4/300 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETM 78
           H+PVLL  ++A + P  G   LD TFGAGGY+R   + G++ VI +DRDP A+       
Sbjct: 11  HIPVLLRPLLAAVAPVEG-TWLDGTFGAGGYARGLLEAGADRVIGVDRDPLALKMASGWA 69

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138
            DY ++  L   TFSQL  +     +DGVV DLGVSSMQ+D  +RGFSFQK GPLDMRMS
Sbjct: 70  GDYGDRLRLVAGTFSQLDSHA-GAPLDGVVLDLGVSSMQLDLAERGFSFQKDGPLDMRMS 128

Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198
             G SA+D+VN A+ + L  IL   GEE+ + RIA AIV+ R +AP   T  L+ ++ + 
Sbjct: 129 QEGESAADLVNTASEETLADILYHYGEERASRRIARAIVEARAAAPITRTLALAEIVARC 188

Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258
           +   K  ++HPATRSFQA+RI VN E  EL +GL +AE+AL+ GG L VV+FHSLEDR+V
Sbjct: 189 LPRPKPGQMHPATRSFQAIRIAVNAEFSELVEGLEAAERALRPGGRLAVVTFHSLEDRIV 248

Query: 259 KKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           K+F   RS G+    R+   + A    F    ++ + P + ++A N R+RSA+LR G+RT
Sbjct: 249 KRFLQLRSGGEGQGNRYAPETRADAPRFTLPLRRAISPDEAELAENPRARSARLRVGVRT 308


>gi|240141491|ref|YP_002965971.1| S-adenosyl-dependent methyltransferase [Methylobacterium extorquens
           AM1]
 gi|263456428|sp|C5ATZ5|RSMH_METEA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|240011468|gb|ACS42694.1| S-adenosyl-dependent methyltransferase [Methylobacterium extorquens
           AM1]
          Length = 351

 Score =  265 bits (677), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 143/305 (46%), Positives = 192/305 (62%), Gaps = 7/305 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           HVPVLL +V+A L+     + +D TFGAGGY+R+  + G  V  IA+DRDP A+  G + 
Sbjct: 20  HVPVLLAEVLAALSLDRPGLAVDGTFGAGGYTRALLEAGPEVRVIAIDRDPTAIRGGADL 79

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +     +  L Q  F  L   + D+     D +V D+GVSSMQID   RGFSF++ GPLD
Sbjct: 80  VTASGGRLRLVQGRFGDLDTLIADQDEAQADWIVLDIGVSSMQIDEAQRGFSFRQDGPLD 139

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRM   G SA+D+VN      L  IL   GEE+++  +A AIV+ R+ AP +TT  L+ L
Sbjct: 140 MRMGGEGPSAADLVNGEEETTLADILYHFGEERRSRAVARAIVEARRRAPIETTAQLADL 199

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           +   V     + IHPATRSFQ LRI VN+E+ EL +GL +AE+ LK GG L VV+FHSLE
Sbjct: 200 VAGVVRPEPGSPIHPATRSFQGLRIAVNDELGELVRGLHAAERVLKPGGRLAVVTFHSLE 259

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           DR+VK+FF++RSG+       +P    PA   F+ +TK  V+P++ +   N RSRSAKLR
Sbjct: 260 DRIVKQFFSARSGRAAQASRHVPGVERPAPKSFKLVTKGPVLPSEAETDVNPRSRSAKLR 319

Query: 313 AGMRT 317
           AG RT
Sbjct: 320 AGERT 324


>gi|85373178|ref|YP_457240.1| S-adenosyl-methyltransferase MraW [Erythrobacter litoralis
           HTCC2594]
 gi|122545211|sp|Q2NCZ8|RSMH_ERYLH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|84786261|gb|ABC62443.1| S-adenosyl-methyltransferase [Erythrobacter litoralis HTCC2594]
          Length = 315

 Score =  265 bits (676), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 138/304 (45%), Positives = 198/304 (65%), Gaps = 10/304 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           HVPVLL++V+A L+P PG V++DATFGAGGY+R+    G+ V A DRDP A++ G +   
Sbjct: 7   HVPVLLDEVVAALDPQPGDVLVDATFGAGGYTRALLDSGATVHAFDRDPDAIAAGSQWPE 66

Query: 80  DYKE--QFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
             +E  +  L    FS++   + + GV   DGV  D+GVSSMQ+D   RGF+F   GPLD
Sbjct: 67  TKEEPPRLVLHPRRFSEMVHALAEAGVAQVDGVAMDIGVSSMQLDQAQRGFAFSADGPLD 126

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRMS  G SA+D +N A  +++  +L   GEE+Q+ R+A AI+  R   P +TT DL+ +
Sbjct: 127 MRMSQHGPSAADFLNSAEAEEIADVLYQYGEERQSRRVARAIIAAR---PLETTGDLARV 183

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           ++K + +       PATR+FQA+RI VN E++EL +GL +AE  L++GG L VVSFHSLE
Sbjct: 184 VRKALGYRVGAPKDPATRTFQAVRIHVNGELDELREGLHAAEHLLRSGGRLAVVSFHSLE 243

Query: 255 DRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           DR+VK+F  S SGK       +P ++  PA+F  I+ K + P++ ++A N R+RS+ LR 
Sbjct: 244 DRIVKRFLQSASGKAGGTSRYLPQTDVSPAIFSDIS-KAIRPSEAEIARNPRARSSTLRH 302

Query: 314 GMRT 317
             RT
Sbjct: 303 ATRT 306


>gi|332557530|ref|ZP_08411852.1| 16S rRNA m(4)C1402 methyltranserfase [Rhodobacter sphaeroides WS8N]
 gi|332275242|gb|EGJ20557.1| 16S rRNA m(4)C1402 methyltranserfase [Rhodobacter sphaeroides WS8N]
          Length = 331

 Score =  265 bits (676), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 142/300 (47%), Positives = 193/300 (64%), Gaps = 4/300 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETM 78
           H+PVLL  ++A + P  G   LD TFGAGGY+R   + G++ VI +DRDP A+       
Sbjct: 11  HIPVLLRPLLAAVAPVEG-TWLDGTFGAGGYARGLLEAGADRVIGVDRDPLALKMASGWA 69

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138
            DY ++  L   TFSQL  +     +DGVV DLGVSSMQ+D  +RGFSFQK GPLDMRMS
Sbjct: 70  GDYGDRLRLVAGTFSQLDSHA-GAPLDGVVLDLGVSSMQLDLAERGFSFQKDGPLDMRMS 128

Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198
             G SA+D+VN A+ + L  IL   GEE+ + RIA AIV+ R +AP   T  L+ ++ + 
Sbjct: 129 QEGESAADLVNTASEETLADILYHYGEERASRRIARAIVEARAAAPITRTLALAEIVARC 188

Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258
           +   K  ++HPATRSFQA+RI VN E  EL +GL +AE+AL+ GG L VV+FHSLEDR+V
Sbjct: 189 LPRPKPGQMHPATRSFQAIRIAVNAEFSELVEGLEAAERALRHGGRLAVVTFHSLEDRIV 248

Query: 259 KKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           K+F   RS G+    R+   + A    F    ++ + P + ++A N R+RSA+LR G+RT
Sbjct: 249 KRFLQLRSGGEGQGNRYAPETRADAPRFTLPLRRAISPDEAELAENPRARSARLRVGVRT 308


>gi|254419187|ref|ZP_05032911.1| S-adenosyl-methyltransferase MraW [Brevundimonas sp. BAL3]
 gi|196185364|gb|EDX80340.1| S-adenosyl-methyltransferase MraW [Brevundimonas sp. BAL3]
          Length = 322

 Score =  265 bits (676), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 141/303 (46%), Positives = 183/303 (60%), Gaps = 5/303 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H PVLL +VI  L P PG V++DATFGAGGY+R+    G+ VI LDRDP          +
Sbjct: 6   HAPVLLAEVIEALKPGPGDVVIDATFGAGGYTRAILATGAQVIGLDRDPTVQPHADAVAK 65

Query: 80  DYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
           D+  QF L +  FS L     D G   +DG VFD+GVSSMQ+D  +RGFSF + GPLDMR
Sbjct: 66  DFPGQFQLIRTPFSGLAQAFADSGKAKLDGAVFDIGVSSMQLDQAERGFSFMRDGPLDMR 125

Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
           MS  G +A+D+VN  +   L  I  + GEE+Q+ R+A AI++RR    F  T DL+ +++
Sbjct: 126 MSDEGETAADIVNSWDHGPLAHIFKLYGEERQSGRVATAILRRRVEQSFTRTLDLAEVVE 185

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
           K +   +   IHPATR FQALRI VN+E+ EL +GL +AE  L  GG L VV+FHSLEDR
Sbjct: 186 KALGGRRGAPIHPATRVFQALRIAVNDELGELERGLEAAEATLAPGGRLAVVTFHSLEDR 245

Query: 257 LVKKFFASRSGKVMAVRHMIPSNAHP--AVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           +VK F   R+G   A     P    P    F    K      + + + N R+RSAKLRA 
Sbjct: 246 IVKAFLTERTGNTPAGSRHAPIAVDPRKPSFTLQFKGAREAGEGERSTNPRARSAKLRAA 305

Query: 315 MRT 317
           +RT
Sbjct: 306 VRT 308


>gi|114704930|ref|ZP_01437838.1| S-adenosyl-methyltransferase [Fulvimarina pelagi HTCC2506]
 gi|114539715|gb|EAU42835.1| S-adenosyl-methyltransferase [Fulvimarina pelagi HTCC2506]
          Length = 339

 Score =  264 bits (675), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 156/324 (48%), Positives = 202/324 (62%), Gaps = 6/324 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           HVPVLL +VI  L P  G+ I+D TFGAGGY+R+    G+ VIA+DRDP A+   +    
Sbjct: 18  HVPVLLAEVIEALAPNAGETIVDGTFGAGGYTRAILGAGAEVIAIDRDPTAIETARALAG 77

Query: 80  DYKEQFSLFQATFSQLQDYVPDK--GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
           +   + +     F  +   + D+   +DG+V D+GVSSMQID  +RGFSFQK GPLDMRM
Sbjct: 78  ESNGRLTPVAGRFGAMGSLLSDRQGAIDGIVLDVGVSSMQIDKAERGFSFQKDGPLDMRM 137

Query: 138 SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK 197
              G +A+DVVN  +V DL RI   LG+E+ A R A AIV RR++ PF  T DL+ ++ K
Sbjct: 138 GNHGATAADVVNTLSVGDLARIFNFLGDERHAGRAARAIVARREAKPFVRTLDLAGVVGK 197

Query: 198 TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRL 257
            V   K+ +I PATR FQALRIFVN+E+ ELA+ L +AE  LK GG L+VVSFHSLEDR+
Sbjct: 198 AVGRGKHEKIDPATRCFQALRIFVNDELGELARALVAAEGLLKPGGRLVVVSFHSLEDRI 257

Query: 258 VKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR- 316
           VK+FF  R+G     RH+         F S   K V  ++ + A N R+RSAKLR G R 
Sbjct: 258 VKRFFLDRAGTQGGSRHLPDVMPEVPTF-SARNKAVAASEREAADNPRARSAKLRFGTRL 316

Query: 317 -TVERSIEDDSFVHLPRLPTLSQF 339
               RS  D +F  LP L  LS+ 
Sbjct: 317 EAAPRS-GDLAFASLPDLADLSRI 339


>gi|83858922|ref|ZP_00952444.1| hypothetical protein OA2633_05446 [Oceanicaulis alexandrii
           HTCC2633]
 gi|83853745|gb|EAP91597.1| hypothetical protein OA2633_05446 [Oceanicaulis alexandrii
           HTCC2633]
          Length = 334

 Score =  263 bits (672), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 147/328 (44%), Positives = 200/328 (60%), Gaps = 11/328 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78
           H+PV+L++V+  L P  G + +D TFGAGGY+R         V+ +DRDP A    +   
Sbjct: 6   HIPVMLDEVLTHLQPRDGGLYVDGTFGAGGYTRGILGAADCRVLGIDRDPSARETAERMK 65

Query: 79  RDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
             YK +F+     FS ++D +      GVDGVV DLGVSSMQ+D  +RGFSFQK GPLDM
Sbjct: 66  PAYKGRFAFGFGPFSMMEDIIEAAGSSGVDGVVLDLGVSSMQLDQAERGFSFQKDGPLDM 125

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RMS SG +A+D VN     +L  I  + GEE+ A R A+AIV+ R+  P   T  L+ +I
Sbjct: 126 RMSQSGPTAADAVNHLEAHELAAIFKVYGEERHARRAANAIVRAREVEPITRTLVLADII 185

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
            + V   K  RIHPATRSFQ LRI+VN+E+ EL +GL++AE+ L+  G L+VV+FHSLED
Sbjct: 186 GRAVG-GKPGRIHPATRSFQGLRIYVNDELGELVRGLQAAERVLRPAGRLVVVTFHSLED 244

Query: 256 RLVKKFFASRSGKV-MAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           R+VK F   R+G      RH   I +   P+ F  ++KK +  T+ + A N RSRSAKLR
Sbjct: 245 RIVKTFLRERAGLTGGGSRHQPEIQAERDPS-FALVSKKALSATEAEAAENPRSRSAKLR 303

Query: 313 AGMRTVERSI--EDDSFVHLPRLPTLSQ 338
           A +R    +   ED+ F  +P    L +
Sbjct: 304 AAIRNEHEAWPREDEGFAGVPSYRRLEE 331


>gi|260430921|ref|ZP_05784892.1| S-adenosyl-methyltransferase MraW [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260414749|gb|EEX08008.1| S-adenosyl-methyltransferase MraW [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 331

 Score =  263 bits (671), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 145/307 (47%), Positives = 191/307 (62%), Gaps = 7/307 (2%)

Query: 15  HTIGD--HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAV 71
           HT  D  H+PVLL  ++  + P  G   LD TFGAGGY+R   + G++ VI +DRDP A 
Sbjct: 6   HTPTDKPHIPVLLRPLLDAVRPVSG-TWLDGTFGAGGYTRGLLEAGADRVIGVDRDPLAF 64

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
               +   +Y ++  +    FS++ +Y  D  +DGVV DLGVSSMQ+D  +RGFSF K G
Sbjct: 65  EMAADWAAEYGDRLVMQPGVFSRMDEYASD--LDGVVLDLGVSSMQLDQAERGFSFMKDG 122

Query: 132 PLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           PLDMRMS  G SA+D+VN A    L  IL   GEE+ + RIA AIVK R  AP  TT  L
Sbjct: 123 PLDMRMSQEGESAADLVNTATEAQLADILFHYGEERASRRIARAIVKARAEAPITTTLRL 182

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + +++  +  +K  + HPATRSFQALRI VN E EEL QGL +AE+ALK GG L VV+FH
Sbjct: 183 AEIVESCLPRAKPGQSHPATRSFQALRIAVNAEYEELFQGLMAAERALKPGGKLAVVTFH 242

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPS-NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           S+EDR+VK+F  +R+GK        P        F   T+K + P  +++  N R+RSAK
Sbjct: 243 SVEDRMVKRFLQARAGKTGRANRYAPEIQQDQPQFTLKTRKAIGPDAQELQDNPRARSAK 302

Query: 311 LRAGMRT 317
           LR  +RT
Sbjct: 303 LRVAVRT 309


>gi|16126800|ref|NP_421364.1| hypothetical protein CC_2562 [Caulobacter crescentus CB15]
 gi|221235581|ref|YP_002518018.1| S-adenosyl-methyltransferase MraW [Caulobacter crescentus NA1000]
 gi|20139272|sp|Q9RQJ6|RSMH_CAUCR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446411|sp|B8H0A2|RSMH_CAUCN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|6318314|gb|AAF06834.1|AF099190_2 unknown [Caulobacter crescentus CB15]
 gi|13424128|gb|AAK24532.1| conserved hypothetical protein [Caulobacter crescentus CB15]
 gi|220964754|gb|ACL96110.1| S-adenosyl-methyltransferase mraW [Caulobacter crescentus NA1000]
          Length = 311

 Score =  263 bits (671), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 145/305 (47%), Positives = 206/305 (67%), Gaps = 15/305 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+ VLL++V+  L+  PG V++D TFGAGGY+R+    G++V+A DRDP        T+R
Sbjct: 6   HISVLLDEVVEALDAKPGDVVVDGTFGAGGYTRAVLPTGASVVAFDRDP--------TVR 57

Query: 80  DYK-----EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
            +      ++F L QA FS++ D +  + V+GV+ DLGVSSMQ+D  +RGFSF + GPLD
Sbjct: 58  QFAANLPADRFRLVQARFSEMLDELGPESVEGVMLDLGVSSMQLDQAERGFSFMRDGPLD 117

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRM  +G +A+D+VN  +  +L +IL + GEE  + RIA  I++RR+  PF+ T DL+ +
Sbjct: 118 MRMGDTGPTAADLVNTLDHAELAKILYVYGEEHASRRIASFILRRREERPFERTLDLAEV 177

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           I++ V   K  ++HPATRSFQ LRI VN+E+ EL  GL +AE+ LK GG L+VV+FHSLE
Sbjct: 178 IERAVGGRKGAKVHPATRSFQGLRIAVNDELGELEAGLAAAERVLKPGGRLVVVTFHSLE 237

Query: 255 DRLVKKFFASRSGKVM-AVRHMIPSNAHPAV-FQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           DR+VK F A R+GK     RH  P  A  A  FQ I+ K + P++ ++A N R+RS+KLR
Sbjct: 238 DRIVKAFLAERAGKAPGGSRHAPPVAAGAAPSFQLISNKAIAPSEAELAVNPRARSSKLR 297

Query: 313 AGMRT 317
           A +RT
Sbjct: 298 AAVRT 302


>gi|154252855|ref|YP_001413679.1| S-adenosyl-methyltransferase MraW [Parvibaculum lavamentivorans
           DS-1]
 gi|262824741|sp|A7HVT9|RSMH_PARL1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|154156805|gb|ABS64022.1| S-adenosyl-methyltransferase MraW [Parvibaculum lavamentivorans
           DS-1]
          Length = 339

 Score =  262 bits (669), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 147/316 (46%), Positives = 204/316 (64%), Gaps = 9/316 (2%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALD 65
           MS    ++   H+PV+L  V+ +L P  G V +D TFGAGGY+R+   +GS    V+A+D
Sbjct: 1   MSDNGQNSASPHIPVMLADVLDVLKPRDGGVYVDGTFGAGGYTRAI--LGSADCAVLAID 58

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGD 122
           RDP A+  G+    ++  + +L +  F  ++  V + G   VDGVV D+GVSSMQ+D  +
Sbjct: 59  RDPTAILRGRALATEFAGRLTLIEGRFGDMKRLVRELGHGTVDGVVLDIGVSSMQLDQAE 118

Query: 123 RGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           RGFSFQ+ GPLDMRM   G SA+DVVN  +  DL RI+ + GEEK+A  +A AIV  RQ+
Sbjct: 119 RGFSFQQDGPLDMRMGGEGPSAADVVNHFDEADLARIIAVYGEEKRARAVARAIVAARQT 178

Query: 183 APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           A    T +L+ L+   ++    +RIHPATR+FQALRIFVN+E+ ELA+GL  AE  L  G
Sbjct: 179 AELHRTLELADLVASVIHRKPQDRIHPATRTFQALRIFVNDELGELARGLSGAEDLLHEG 238

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           G L VV+FHSLEDR+VK+F  +R+G+   A R+M   +     F+ I  K +  ++E+V 
Sbjct: 239 GRLAVVAFHSLEDRIVKRFLTARTGRAGRANRYMPERDEVAPSFREIAHKAMKASEEEVE 298

Query: 302 FNRRSRSAKLRAGMRT 317
            N R+RSAKLRA  RT
Sbjct: 299 INVRARSAKLRAAERT 314


>gi|85703617|ref|ZP_01034721.1| S-adenosyl-methyltransferase MraW [Roseovarius sp. 217]
 gi|85672545|gb|EAQ27402.1| S-adenosyl-methyltransferase MraW [Roseovarius sp. 217]
          Length = 330

 Score =  261 bits (666), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 136/300 (45%), Positives = 194/300 (64%), Gaps = 5/300 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETM 78
           H+PVLL  ++A + P  G V LD T GAGGY+R   + G++ V+ +DRDP A+   +E  
Sbjct: 13  HIPVLLRPLLAAVAPVRG-VWLDGTLGAGGYARGLLEAGADQVVGVDRDPLALEMAREWG 71

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138
            +Y ++  L Q  F+Q+ DY  D  +DGVV DLGVSSMQ+D  +RGFSF + GPLDMRMS
Sbjct: 72  AEYGDRLRLVQGNFAQMDDYAAD--LDGVVLDLGVSSMQLDRAERGFSFMRDGPLDMRMS 129

Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198
             G +A+D+VN  +  +L  IL + GEE+ + RIA AIVK R+  P ++T  L+ ++++ 
Sbjct: 130 QDGPTAADLVNTTDEAELADILYLYGEERASRRIARAIVKAREVTPIESTLQLTGIVERC 189

Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258
           +  SK  + H ATRSFQA+RI VN+E   L +GL +AE+AL+ GG L VV+FHS+EDR+V
Sbjct: 190 LPRSKPGQAHVATRSFQAIRIAVNDEYGSLIEGLEAAERALRPGGQLAVVTFHSIEDRMV 249

Query: 259 KKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           K+F   RSG      RH          F   ++K + P  +++A N R+RSA+LR  +RT
Sbjct: 250 KRFMQLRSGGGGTGSRHAPEIEREAPQFSLKSRKAIGPDDDELAVNPRARSARLRVAVRT 309


>gi|114773347|ref|ZP_01450551.1| S-adenosyl-methyltransferase MraW [alpha proteobacterium HTCC2255]
 gi|114546281|gb|EAU49192.1| S-adenosyl-methyltransferase MraW [alpha proteobacterium HTCC2255]
          Length = 337

 Score =  261 bits (666), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 141/320 (44%), Positives = 201/320 (62%), Gaps = 7/320 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI-ALDRDPFAVSCGQETM 78
           H+PVLL  ++  + P  G + +D TFGAGGYSR+    G++ + A+DRDP   +  ++  
Sbjct: 13  HIPVLLTPILDSVKPISG-IWVDGTFGAGGYSRAILDAGADTLYAIDRDPEVFARAKKWA 71

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           +DY  +  L   TFS L  +V + G   +DGVV D+GVSSMQ+D  +RGFSF K GPLDM
Sbjct: 72  KDYDGRLKLIHGTFSDLDTHVKNAGTDLIDGVVLDIGVSSMQLDQAERGFSFMKDGPLDM 131

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RM  SG+SA+D+VN    K L  ++ + GEE+ + RIA  IVK R++  F+TT  L  +I
Sbjct: 132 RMGQSGMSAADIVNSVEEKVLADLIYLYGEERASRRIARNIVKSRENLKFETTFQLVKVI 191

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           + ++   K  + HPATR+FQALRI VN+E+ +L  GLR+AE  L+ GGLL VV+FHSLED
Sbjct: 192 EASLPRPKPGQTHPATRTFQALRIAVNDELGQLVSGLRAAENILREGGLLAVVTFHSLED 251

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHP-AVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           R+VK+F  +RSG         P   +  A F+ I +K +   ++++  N R+RSAKLR  
Sbjct: 252 RIVKRFIQARSGNNPRGNRYQPEKTNDIATFEKIGRKAIAANKDEINSNPRARSAKLRLA 311

Query: 315 MRTVERSIEDDSF-VHLPRL 333
            R    S E  +F + LP+ 
Sbjct: 312 RRLNTTSGEFSAFDIGLPKF 331


>gi|110680542|ref|YP_683549.1| S-adenosyl-methyltransferase, putative [Roseobacter denitrificans
           OCh 114]
 gi|123172199|sp|Q163I0|RSMH_ROSDO RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|109456658|gb|ABG32863.1| S-adenosyl-methyltransferase, putative [Roseobacter denitrificans
           OCh 114]
          Length = 330

 Score =  260 bits (665), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 143/310 (46%), Positives = 192/310 (61%), Gaps = 5/310 (1%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDP 68
           ++A   T   H+PVLL  ++  + P  G V LD TFGAGGY+R   + G++ VIA+DRDP
Sbjct: 3   AAATADTTSPHIPVLLPAILDAVAPVQG-VWLDGTFGAGGYTRGLLEAGADRVIAVDRDP 61

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
            A     +    Y  +       FS++  Y     +DGVV DLGVSSMQ+D  +RGFSF 
Sbjct: 62  LAFEMAADWAGSYGTRLVQQPGVFSEMDTYA--VALDGVVLDLGVSSMQLDLAERGFSFM 119

Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           + GPLDMRMS  G SA+D+VN+A+ + L  IL   GEE+ + RIA AI+  R  AP  TT
Sbjct: 120 RDGPLDMRMSQEGPSAADIVNEASAETLANILFQYGEERASRRIAKAILTERALAPITTT 179

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ +I++ +  +K  + HPATRSFQALRI VN+E  EL QGL +AE+ALK GG L VV
Sbjct: 180 LHLAGIIERCLPRAKPGQSHPATRSFQALRIAVNDEYGELYQGLMAAERALKPGGQLAVV 239

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPA-VFQSITKKVVVPTQEDVAFNRRSR 307
           +FHS+EDR+VK+F  +R+G         P     A  F   ++K +V    +VA N R+R
Sbjct: 240 TFHSVEDRMVKRFLTARAGAGGNANRFAPEVQRDAPAFTLRSRKAIVADDAEVAANPRAR 299

Query: 308 SAKLRAGMRT 317
           SAKLR  +RT
Sbjct: 300 SAKLRIAVRT 309


>gi|149914518|ref|ZP_01903048.1| S-adenosyl-methyltransferase MraW [Roseobacter sp. AzwK-3b]
 gi|149811311|gb|EDM71146.1| S-adenosyl-methyltransferase MraW [Roseobacter sp. AzwK-3b]
          Length = 331

 Score =  259 bits (662), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 139/300 (46%), Positives = 187/300 (62%), Gaps = 5/300 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78
           H+PVLL  ++  + P  G V +D T GAGGY+R   + G+  VI +DRDP A+       
Sbjct: 14  HIPVLLRPLLEAVAPVEG-VWIDGTLGAGGYTRGLLEAGAQTVIGVDRDPLALEMAALWG 72

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138
             Y ++  L Q  FS +  +  D  VDGVV DLGVSSMQ+D  +RGFSF + GPLDMRMS
Sbjct: 73  AAYGDRLVLVQDIFSNMDAHASD--VDGVVLDLGVSSMQLDRAERGFSFMRDGPLDMRMS 130

Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198
             G +A+D+VN A+  +L  IL + GEE+ + RIA AI++ R S    TT  L+ +I+  
Sbjct: 131 QQGPTAADLVNTADEGELADILYLYGEERASRRIARAILRERASGDIDTTLHLARIIESC 190

Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258
           +   K  ++HPATRSFQALRI VN+E  EL  GL +AE+ALK GG L VV+FHS+EDR+V
Sbjct: 191 LPRPKPGQVHPATRSFQALRIAVNDEFGELVAGLEAAERALKPGGKLAVVTFHSIEDRMV 250

Query: 259 KKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           K+F  ++S       RH       PA F    +K + P + ++A N RSRSAKLR  +RT
Sbjct: 251 KRFLQAKSAGGGGGSRHAPAMRPEPAEFDVTQRKAIGPDKSELAENPRSRSAKLRVAIRT 310


>gi|144897763|emb|CAM74627.1| Bacterial methyltransferase [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 328

 Score =  259 bits (662), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 144/304 (47%), Positives = 191/304 (62%), Gaps = 7/304 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78
           H+PVLL +V+  L P  G V++D TFGAGGYS +        V  +DRDP A++ GQ   
Sbjct: 15  HIPVLLAEVVQALAPQDGDVMVDGTFGAGGYSLALLDCARIRVFGIDRDPSAIAAGQRLP 74

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           +    + S+ +  +  +   +P  G   VDG+  D+GVSSMQID  +RGFSF K GPLDM
Sbjct: 75  QAADGRLSVIEGRYGDMDLLLPQAGIARVDGIALDIGVSSMQIDQAERGFSFAKDGPLDM 134

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RM  SG SA+DVVN A+  +L  I+  LGEEK A R+A AIV  R   PF  T  L+++I
Sbjct: 135 RMEQSGPSAADVVNTASEAELADIIYHLGEEKYARRVARAIVAARLDTPFTRTLQLANVI 194

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           +  V  S +  I P+TR+FQALRI VN+E+ EL +GL +AE+ L  GG L VV+FHSLED
Sbjct: 195 RGAVRKSGDG-IDPSTRTFQALRIHVNDELGELERGLEAAERLLAPGGRLAVVTFHSLED 253

Query: 256 RLVKKFFASRSGKVMAV-RHMIPSNAHPA-VFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           R+VK F   RSG + A  RH+    A PA  F  I++K + P+  +   N R+RSAKLRA
Sbjct: 254 RVVKTFLKKRSGDMPAPSRHLPAQAAGPAPTFSLISRKAIAPSDAECRANPRARSAKLRA 313

Query: 314 GMRT 317
            +RT
Sbjct: 314 ALRT 317


>gi|294677904|ref|YP_003578519.1| S-adenosyl-methyltransferase MraW [Rhodobacter capsulatus SB 1003]
 gi|294476724|gb|ADE86112.1| S-adenosyl-methyltransferase MraW [Rhodobacter capsulatus SB 1003]
          Length = 338

 Score =  258 bits (660), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 144/303 (47%), Positives = 195/303 (64%), Gaps = 6/303 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETM 78
           H+PVLL  ++  + P  G   LD TFGAGGY+R     G+  VI +DRDP A        
Sbjct: 8   HIPVLLRPLLQAVAPVLG-TWLDGTFGAGGYARGLLAAGAGRVIGIDRDPLAFEMAAPWR 66

Query: 79  RDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
            ++ E+  L + TFS L      +  +G++GVV DLGVSSMQ+D  +RGFSF + GPLDM
Sbjct: 67  GEFGERLVLVENTFSNLDAVAAEIAPEGLNGVVLDLGVSSMQLDQAERGFSFLRDGPLDM 126

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RMS SG SA+D+VN A    L  IL   GEE+ + RIA AIV+ R+SAP+++T+ L + I
Sbjct: 127 RMSQSGPSAADLVNTAEEGALADILYHYGEERASRRIARAIVEARKSAPYESTKQLVATI 186

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           ++ +   K  + HPATRSFQALRI VN+E  +L  GL +AE+ALK GG L VV+FHSLED
Sbjct: 187 ERCLPRPKPGQSHPATRSFQALRIAVNDEFGQLIAGLEAAERALKPGGKLAVVTFHSLED 246

Query: 256 RLVKKFFASRSGKVM-AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           R+VK+FF +R+G+     R+   +    A F  +T+K V P + ++A N R+RSA LR G
Sbjct: 247 RVVKRFFQARAGRAPGGSRYAPEAAPEAAAFDLVTRKGVGPDEIELAQNPRARSAILRIG 306

Query: 315 MRT 317
            RT
Sbjct: 307 ART 309


>gi|298293108|ref|YP_003695047.1| S-adenosyl-methyltransferase MraW [Starkeya novella DSM 506]
 gi|296929619|gb|ADH90428.1| S-adenosyl-methyltransferase MraW [Starkeya novella DSM 506]
          Length = 345

 Score =  258 bits (660), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 140/302 (46%), Positives = 198/302 (65%), Gaps = 5/302 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETM 78
           H+PVLL +V+  L P  G + +D TFGAGGY+ +     G++VIA+DRDP A+  GQ  +
Sbjct: 19  HLPVLLAEVVEHLAPKDGGLYIDGTFGAGGYTSAILNAAGTSVIAIDRDPTAIEGGQGLV 78

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
                + +L    FS L +    +G   VDGVV D+GVSSMQID G+RGFSF++ GPLDM
Sbjct: 79  AASGGRLTLVHERFSALDEVAAAQGIDAVDGVVLDIGVSSMQIDEGERGFSFRRDGPLDM 138

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RMS  G SA+D+V + +  DL  ++   GEE+ +  +A AIV  R+ AP + T  L+ ++
Sbjct: 139 RMSSEGPSAADLVAKLSETDLANLIFRFGEERHSRAVARAIVAARKEAPIERTLQLADIV 198

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
            K V+ +K +  HPATR+FQALRI VN+E+ ELA+ L +AE+ LK GG L+VV+FHSLED
Sbjct: 199 AKVVW-AKPHEPHPATRTFQALRIAVNDELGELARALSAAERVLKPGGRLVVVTFHSLED 257

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           R+VK F A+R+      RHM    + P  F+ + +  V P +E++A N R+RS++LRA  
Sbjct: 258 RIVKTFLANRAKAAAGSRHMPALQSAPPSFKLVARGAVEPGEEELARNPRARSSRLRAAE 317

Query: 316 RT 317
           RT
Sbjct: 318 RT 319


>gi|304321488|ref|YP_003855131.1| hypothetical protein PB2503_09684 [Parvularcula bermudensis
           HTCC2503]
 gi|303300390|gb|ADM09989.1| hypothetical protein PB2503_09684 [Parvularcula bermudensis
           HTCC2503]
          Length = 331

 Score =  258 bits (660), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 136/299 (45%), Positives = 196/299 (65%), Gaps = 6/299 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H PVLL+ VI  L+P PG++++D TFGAGGY+R   + G+ +IA DRDP A++ G+   R
Sbjct: 5   HQPVLLDAVIDRLSPQPGEILVDGTFGAGGYTRRLLEAGATIIAFDRDPTAIAAGRSLER 64

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
           +  +  +L +A FS L ++V    ++GVVFD GVSSMQ+D  +RGFSF+  GPLDMRM  
Sbjct: 65  ECGDALTLVEAPFSALAEHVAPP-INGVVFDFGVSSMQLDRPERGFSFRAEGPLDMRMG- 122

Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199
           +G  A+D VNQA    L  +    GEE+++  +A  IV +R++ PF+TT  L+++ +  +
Sbjct: 123 AGRPAADFVNQAEEAALADVFYHYGEERRSRALARRIVAQRETTPFETTAQLAAVAEAVL 182

Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259
                ++IHPATR FQALRI VN+E+ E+ + L +AEK L  GG L+ VSFHSLEDR+VK
Sbjct: 183 --GTRDKIHPATRMFQALRILVNDELGEIVRALIAAEKVLAEGGRLVAVSFHSLEDRIVK 240

Query: 260 KFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           +FF    G+   A RH  P +     F  + K +    + ++A N R+RSA+LRAG+RT
Sbjct: 241 RFFQVTEGRAQTASRHEPPVDKILPRFAPLGKALSA-DEAEIAGNPRARSARLRAGVRT 298


>gi|182677677|ref|YP_001831823.1| S-adenosyl-methyltransferase MraW [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|263445947|sp|B2IGF2|RSMH_BEII9 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|182633560|gb|ACB94334.1| S-adenosyl-methyltransferase MraW [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 355

 Score =  258 bits (659), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 148/305 (48%), Positives = 197/305 (64%), Gaps = 7/305 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF-CKMGSNVIALDRDPFAVSCGQETM 78
           HVPVL E+V+A L+   G   LDATFGAGGY+R+   +  ++V+A+DRDP A++ G+   
Sbjct: 19  HVPVLREEVVAALDCKKGGFYLDATFGAGGYTRALLAEPETHVLAIDRDPEAIAAGRALE 78

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
            +   +  L    FS L D    +G+   DG+VFD+GVSSMQ+D  +RGFSF+  GPLDM
Sbjct: 79  AESAGRLILAHGRFSTLADIAAAEGIPAFDGIVFDIGVSSMQLDQPERGFSFRGEGPLDM 138

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RM   G SA+D+VN A+ + L  I    GEE+ + RIA AIV  R   PF TT+ L+ LI
Sbjct: 139 RMESRGPSAADLVNTADEQRLADIFYYFGEERASRRIARAIVTDRAHTPFTTTRQLAELI 198

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
            + V   K   IHPATR FQALRI VN E+ EL + L +AE  L+ GG L+VV+FHSLED
Sbjct: 199 AR-VNPGKPGDIHPATRVFQALRIAVNEELLELVRALAAAEALLREGGRLVVVTFHSLED 257

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNA--HPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           R+VK+F A+RSG+  AV   +P      P  F    K+ V+P+ E++A N R+RSAKLR 
Sbjct: 258 RIVKQFLAARSGRGQAVSRPLPGEPALAPPTFILPGKQPVLPSPEEIAVNPRARSAKLRF 317

Query: 314 GMRTV 318
           G+RT 
Sbjct: 318 GLRTA 322


>gi|85707758|ref|ZP_01038824.1| S-adenosyl-methyltransferase [Erythrobacter sp. NAP1]
 gi|85689292|gb|EAQ29295.1| S-adenosyl-methyltransferase [Erythrobacter sp. NAP1]
          Length = 313

 Score =  258 bits (659), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 138/303 (45%), Positives = 195/303 (64%), Gaps = 9/303 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H PVLL++V+A + P+P   I+DATFGAGGYSR+  + G+ V A DRDP A+  GQ  + 
Sbjct: 5   HTPVLLDEVVAAIQPSPDMAIIDATFGAGGYSRALLEKGARVYAFDRDPNAIRDGQGMVA 64

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
           ++  + SL    FS +++ +   GV   D VV D+GVSSMQ+D G+RGF+F   GPLDMR
Sbjct: 65  EFDGRLSLHAERFSSMREEMTRIGVPQVDAVVMDIGVSSMQLDQGERGFAFSADGPLDMR 124

Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
           MS +G SA+D +N A+   +  +L   GEE+Q+ R+A AIV  R   P +TT DL+ +++
Sbjct: 125 MSQAGESAADFLNTADEAAIADVLYQYGEERQSRRVARAIVAAR---PLETTGDLARVVR 181

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
           K +    +++  PATRSFQA+RI VN+E+ EL  GL +AE  L+ GG+L VVSFHSLEDR
Sbjct: 182 KALGHKPHDKKDPATRSFQAVRIHVNDELGELRAGLNAAETLLREGGVLAVVSFHSLEDR 241

Query: 257 LVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           +VK+F    SG   AV   +P      P  F  ++ K + P+  ++  N RSRS+ LR  
Sbjct: 242 IVKRFLKEASGAGRAVSRHLPGEVPGPPPTFTRVS-KAIRPSGAEIERNPRSRSSILRHA 300

Query: 315 MRT 317
           +RT
Sbjct: 301 IRT 303


>gi|254441632|ref|ZP_05055125.1| S-adenosyl-methyltransferase MraW [Octadecabacter antarcticus 307]
 gi|198251710|gb|EDY76025.1| S-adenosyl-methyltransferase MraW [Octadecabacter antarcticus 307]
          Length = 325

 Score =  258 bits (658), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 148/318 (46%), Positives = 196/318 (61%), Gaps = 10/318 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETM 78
           H+PVL+  +IA  +P  G   LDATFGAGGY++     G++ VI +DRDP      Q   
Sbjct: 10  HIPVLIGPLIAACSPISG-TWLDATFGAGGYTQRLLAAGADKVIGVDRDPAVFKMAQWAA 68

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138
            +     +L + TFS L     D  +DG+V DLGVSSMQID  +RGFSF + GPLDMRM 
Sbjct: 69  DN--PAITLVEDTFSNLDTIASD--LDGIVLDLGVSSMQIDQAERGFSFMRDGPLDMRMG 124

Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198
             G SA+D+VN+A+  DL  IL I GEE+ + RIA  IV++R   P  TT  L+ LI+  
Sbjct: 125 QEGQSAADIVNEADETDLADILYIYGEERASRRIARKIVEQRDREPITTTLRLAKLIEGC 184

Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258
           +  SK  + HPATRSFQA+RI VN+E  +LA+GL +AE+ALK GG L +V+FHS+EDR+V
Sbjct: 185 LPRSKQGQSHPATRSFQAIRIAVNDEYGQLAEGLEAAERALKPGGYLAIVTFHSVEDRMV 244

Query: 259 KKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           K+F   R G +       P      P+ F+ ITKK     +++VA N RSRSAKLR   R
Sbjct: 245 KRFLQQRGGGMGNANRYSPVLETEKPS-FEIITKKAKAADEDEVAQNPRSRSAKLRVARR 303

Query: 317 T-VERSIEDDSFVHLPRL 333
           T       D S + +P+L
Sbjct: 304 TDAPAGALDRSKIGMPQL 321


>gi|84501746|ref|ZP_00999918.1| S-adenosyl-methyltransferase MraW [Oceanicola batsensis HTCC2597]
 gi|84390367|gb|EAQ02926.1| S-adenosyl-methyltransferase MraW [Oceanicola batsensis HTCC2597]
          Length = 331

 Score =  257 bits (657), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 138/313 (44%), Positives = 193/313 (61%), Gaps = 4/313 (1%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRD 67
           M+++       H+PVLL  +I  + P  G   LD TFGAGGY+R   + G+  VI +DRD
Sbjct: 1   MAASAPSPDAPHIPVLLRPLIDRVAPVAG-TWLDGTFGAGGYARGLLEAGAEKVIGVDRD 59

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
           P A+      + D   +  + Q  F++L D +  + +DGVV DLGVSSMQ+D  +RGFSF
Sbjct: 60  PLALEMAGGWIGDCAGKLEIRQGNFAEL-DRIAGEMLDGVVLDLGVSSMQLDLAERGFSF 118

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
            K GPLDMRMS  G SA+D+VN     DL  ++ + GEE+ + RIA AIV+ R  AP  T
Sbjct: 119 MKDGPLDMRMSQEGPSAADLVNTMAEGDLADVIYLYGEERASRRIARAIVRERAEAPIAT 178

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T  L+ +++  +  +K  + HPATR+FQALRI VN+E   LA+GL +AE+AL+ GG L V
Sbjct: 179 TLRLAGIVEGCLPRAKPGQSHPATRTFQALRIAVNDEYGALAEGLMAAERALRPGGQLAV 238

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRS 306
           V+FHS+EDR+VK+F   RSG+        P        F  +T+K V P ++++  N R+
Sbjct: 239 VTFHSVEDRMVKRFLQLRSGRAGRANRFAPEAPEDKPRFTIVTRKAVGPDEDELEVNPRA 298

Query: 307 RSAKLRAGMRTVE 319
           RSA+LR   RT E
Sbjct: 299 RSARLRVARRTEE 311


>gi|84686327|ref|ZP_01014221.1| methyltransferase MraW/YabC [Maritimibacter alkaliphilus HTCC2654]
 gi|84665510|gb|EAQ11986.1| methyltransferase MraW/YabC [Rhodobacterales bacterium HTCC2654]
          Length = 330

 Score =  257 bits (657), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 146/329 (44%), Positives = 203/329 (61%), Gaps = 17/329 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETM 78
           H+PVLL  ++  + P  G V +D TFGAG Y+R   + G+  VI +DRDP A    +  +
Sbjct: 12  HIPVLLRPLLETVAPVSG-VWIDGTFGAGSYARGLVEAGAETVIGIDRDPLAHEMAEGWL 70

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138
            DY  +  L + TFS + +   D  VDGVV DLGVSSMQ+D  +RGFSF + GPLDMRMS
Sbjct: 71  ADYDGRIRLERGTFSDMDEIAGDP-VDGVVLDLGVSSMQLDLAERGFSFMRDGPLDMRMS 129

Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198
             G +A+D+VN+A  ++L  IL   GEE+ + RIA  IV+ R++  F+TT  L+  ++K 
Sbjct: 130 QEGPTAADLVNEAPEEELADILYHYGEERASRRIARQIVRAREAESFKTTAQLAETVEKC 189

Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258
           +   K  + HPATRSFQA+RI VN+E  +LA+GL +AE+ALK GG L VV+FHSLEDR+V
Sbjct: 190 LPRPKPGQSHPATRSFQAIRIAVNDEFGQLAEGLEAAERALKPGGKLAVVTFHSLEDRVV 249

Query: 259 KKFF---ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           K+F    AS  G     R+   +  H   F    ++ + P +E++A N R+RS++LR   
Sbjct: 250 KRFLQLAASTGGG--GSRYAPAAEDHTPRFDLTPRRAIAPDEEELAENPRARSSRLRVAT 307

Query: 316 RT---VERSIEDDSFVHLPRLPTLSQFRG 341
           RT    ER+  D S + LP       FRG
Sbjct: 308 RTDAPAERT--DRSKLGLP----APAFRG 330


>gi|170738613|ref|YP_001767268.1| S-adenosyl-methyltransferase MraW [Methylobacterium sp. 4-46]
 gi|263456469|sp|B0UFI0|RSMH_METS4 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|168192887|gb|ACA14834.1| S-adenosyl-methyltransferase MraW [Methylobacterium sp. 4-46]
          Length = 337

 Score =  257 bits (656), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 148/307 (48%), Positives = 199/307 (64%), Gaps = 10/307 (3%)

Query: 20  HVPVLLEKV--IALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQ 75
           H+PVLL +V  +  L   PG V++D TFGAGGYSR+      +  VIA+DRDP AV+ GQ
Sbjct: 6   HIPVLLAEVRGVLRLGEGPG-VVVDGTFGAGGYSRALLAADPDLRVIAIDRDPTAVAAGQ 64

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E       +  L Q  F  L   V  +GV   DGVV D+GVSSMQ+D  +RGFSF+  GP
Sbjct: 65  ELAAAAGGRLRLVQGRFGDLDAIVRREGVEAVDGVVLDIGVSSMQLDRAERGFSFRADGP 124

Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           LDMRM  +G SA+D+VN A   +L  I+   GEE+++  +A AI++ R+ AP  TT  L+
Sbjct: 125 LDMRMEGAGTSAADLVNGAPEAELADIIYHFGEERRSRAVARAILEARRRAPIATTGALA 184

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            ++   V     + IHPATR+FQALRI VN+E+ EL + L +AE+ L+ GG L VV+FHS
Sbjct: 185 EIVAGVVRAEPGSGIHPATRTFQALRIAVNDELGELNRALHAAERILRPGGRLAVVTFHS 244

Query: 253 LEDRLVKKFFASRSGK-VMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           LEDR+VK+FF++RSG+ V A RH+ +     P  F  +TK  V P++ + A N R+RSAK
Sbjct: 245 LEDRIVKQFFSARSGRAVSASRHLPMAERPVPRSFTLVTKGPVGPSEAEAAANPRARSAK 304

Query: 311 LRAGMRT 317
           LRAG RT
Sbjct: 305 LRAGERT 311


>gi|209884374|ref|YP_002288231.1| S-adenosyl-methyltransferase MraW [Oligotropha carboxidovorans OM5]
 gi|262824708|sp|B6JCF0|RSMH_OLICO RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|209872570|gb|ACI92366.1| S-adenosyl-methyltransferase MraW [Oligotropha carboxidovorans OM5]
          Length = 333

 Score =  256 bits (654), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 147/332 (44%), Positives = 208/332 (62%), Gaps = 9/332 (2%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRD 67
           MS+A+      H+ VL  + +  L P  G + +DATFGAGGYSR    + G+ VI +DRD
Sbjct: 1   MSAAVSR----HISVLGREAVEFLAPRAGGIYVDATFGAGGYSRRILAVAGARVIGIDRD 56

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRG 124
             A++   + +   + + +L Q  FSQL +    +    VDG+V D+GVSSMQ+D  +RG
Sbjct: 57  RTAIAEAFDLVEQAEGRLTLVQDRFSQLDEVCASQNAPQVDGIVMDIGVSSMQLDRAERG 116

Query: 125 FSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           FSF++ GPLDMRM   G SA+DVV  A+ KDL  I+ I GEE+ +  +A AIV+ RQ  P
Sbjct: 117 FSFRQDGPLDMRMGQEGASAADVVAVASEKDLANIIYIFGEERHSRAVARAIVRARQEKP 176

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
             TT+ L+ ++   V+ ++ N IHPATR+FQALRIFVN E++EL   L ++E+ LK GG 
Sbjct: 177 ILTTKVLADIVASVVH-TRPNDIHPATRTFQALRIFVNEELDELQSALHASERTLKPGGR 235

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           L+VV+FHSLEDR+VK F  +R+ +    RHM         F+ +TK+ VV  + ++A N 
Sbjct: 236 LVVVTFHSLEDRIVKNFINARASRGGGSRHMPDVERTAPSFEILTKRPVVADENEIAANP 295

Query: 305 RSRSAKLRAGMRTVERSIEDDSFVHLPRLPTL 336
           R+RSAKLRA  RT   S + D+    P L T+
Sbjct: 296 RARSAKLRAAERTANASHDADTSFDWPTLRTV 327


>gi|148556856|ref|YP_001264438.1| S-adenosyl-methyltransferase MraW [Sphingomonas wittichii RW1]
 gi|262826617|sp|A5VDD4|RSMH_SPHWW RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|148502046|gb|ABQ70300.1| S-adenosyl-methyltransferase MraW [Sphingomonas wittichii RW1]
          Length = 322

 Score =  256 bits (653), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 140/310 (45%), Positives = 199/310 (64%), Gaps = 12/310 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQ 75
           T   HVPVL+++VIA L PA G+  +D TFGAGGY+R+  + G+ V A DRDP A++ G+
Sbjct: 3   TTAPHVPVLIDEVIAGLEPATGETHVDGTFGAGGYTRALLQAGARVYAFDRDPDAIAEGR 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                   +  L    FS++ + + ++G   VDGV  D+GVSSMQ+D  DRGFSFQ  GP
Sbjct: 63  ALEDGQDGRLILVPERFSRMAEALNERGIDQVDGVTLDIGVSSMQLDRADRGFSFQADGP 122

Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           LDMRM  SG+SA+D VN A+  ++  +L  LGEE +A R+A AIV   Q+ P   T +L+
Sbjct: 123 LDMRMEKSGMSAADFVNTADEAEIADVLHDLGEEPRARRVARAIV---QARPITRTSELA 179

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            ++++ +    + +  PATR+FQA+RI +N E++EL QGL +AE+ L+ GG L VVSFHS
Sbjct: 180 EVVRRALGHKPHEKKDPATRTFQAIRIHLNAELDELEQGLAAAERVLRPGGRLAVVSFHS 239

Query: 253 LEDRLVKKFFASRSGKVMA-VRHMIPSNA---HPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           +EDR+VK+F   RSG   A  RH+  + A    P+ F+++ K V    + ++A N RSRS
Sbjct: 240 IEDRIVKRFLRDRSGATPAGSRHLPDARAGGPRPS-FEAVAKPVRA-GEAELARNPRSRS 297

Query: 309 AKLRAGMRTV 318
           A LR   RT 
Sbjct: 298 ATLRVARRTA 307


>gi|260576880|ref|ZP_05844863.1| S-adenosyl-methyltransferase MraW [Rhodobacter sp. SW2]
 gi|259020917|gb|EEW24230.1| S-adenosyl-methyltransferase MraW [Rhodobacter sp. SW2]
          Length = 334

 Score =  256 bits (653), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 145/300 (48%), Positives = 186/300 (62%), Gaps = 4/300 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78
           HVPVLL  ++A + P  G V LD TFGAGGY+R     G+  VI +DRDP A+       
Sbjct: 11  HVPVLLRPLLAAVAPVQG-VWLDGTFGAGGYARGLLAAGAAKVIGIDRDPLALQMAAAWA 69

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138
            +Y ++  L    FS+L D +  + +DG+V DLGVSSMQ+D  +RGFSF + GPLDMRMS
Sbjct: 70  GEYGDRLRLVAGNFSEL-DVLAGEPLDGIVLDLGVSSMQLDLPERGFSFLRDGPLDMRMS 128

Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198
             G SA+D+VN      L  IL   GEE+ + RIA AIV  R  AP  TT  L+ ++   
Sbjct: 129 QQGDSAADIVNATEEGALADILYTYGEERASRRIAKAIVAARAIAPITTTLRLAEIVAGC 188

Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258
           +   K  + H ATRSFQA+RI VN E  EL +GL +AE+ALK GGLL VV+FHSLEDR+V
Sbjct: 189 LPRPKPGQSHAATRSFQAIRIAVNTEFSELVEGLAAAERALKPGGLLAVVTFHSLEDRIV 248

Query: 259 KKFFASRSGKVMAVRHMIPSNAHPAV-FQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           K+FF  RSG         P+ A  A  F  +T++ V P   ++A N R+RSAKLR G RT
Sbjct: 249 KRFFQLRSGNEANANRYAPAKAEDAPRFDLVTRRAVAPDDAELAENPRARSAKLRVGRRT 308


>gi|114327101|ref|YP_744258.1| S-adenosyl-methyltransferase MraW [Granulibacter bethesdensis
           CGDNIH1]
 gi|122327917|sp|Q0BV17|RSMH_GRABC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|114315275|gb|ABI61335.1| S-adenosyl-methyltransferase mraW [Granulibacter bethesdensis
           CGDNIH1]
          Length = 334

 Score =  255 bits (652), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 143/312 (45%), Positives = 192/312 (61%), Gaps = 11/312 (3%)

Query: 11  SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDP 68
           S  H + G HVPVLL +V+  L+PAPG V LD TFG GGY+R+       S V A+DRDP
Sbjct: 15  SGGHSSTGTHVPVLLNEVLETLSPAPGGVFLDGTFGGGGYTRAILDTAEDSTVWAVDRDP 74

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGF 125
            A++ G+     Y+ +  L Q  FSQ+   + D+GV   DG+V D+GVSS QID  DRGF
Sbjct: 75  AAITRGEALAARYRGRLHLIQGNFSQMASLLTDRGVNALDGIVLDIGVSSFQIDDPDRGF 134

Query: 126 SFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           SF+  GPLDMRM+  G SA+D++ +    ++  IL  LGEE+++ +IA AIV  R   P 
Sbjct: 135 SFRTDGPLDMRMAGEGTSAADLIARLPEAEIANILYELGEERKSRQIARAIVSARAEEPI 194

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            TT  L+S+I+  V   ++  I PATRSFQALRI VN+E+ EL + L+ A   L+ GG L
Sbjct: 195 TTTGRLASIIRCVVPPDRSG-IDPATRSFQALRIAVNDELGELERALQQATNLLQPGGRL 253

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP----SNAHPAVFQSITKKVVVPTQEDVA 301
           ++VSFHSLEDR+VK+F    +G   +     P    +   P  F+ IT K V P   +  
Sbjct: 254 VIVSFHSLEDRIVKRFMNDAAGNAPSPSRYDPRGLVARTEPR-FRLITSKAVRPGTAEQN 312

Query: 302 FNRRSRSAKLRA 313
            N RSRSA+LRA
Sbjct: 313 ANPRSRSARLRA 324


>gi|188584364|ref|YP_001927809.1| S-adenosyl-methyltransferase MraW [Methylobacterium populi BJ001]
 gi|263456461|sp|B1Z8U3|RSMH_METPB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|179347862|gb|ACB83274.1| S-adenosyl-methyltransferase MraW [Methylobacterium populi BJ001]
          Length = 351

 Score =  255 bits (651), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 137/289 (47%), Positives = 183/289 (63%), Gaps = 8/289 (2%)

Query: 36  PGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQFSLFQATFS 93
           PG + +D TFGAGGY+R+  + G +  VIA+DRDP A+  G + +     +  L Q  F 
Sbjct: 37  PG-LAVDGTFGAGGYTRALLESGPDMRVIAIDRDPTAIRAGADLVEGAGGRLRLVQGRFG 95

Query: 94  QLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQ 150
            L   + D+G    D VV D+GVSSMQ+D   RGFSF++ GPLDMRM   G SA+D+VN 
Sbjct: 96  DLDTLLADQGEAQADWVVLDIGVSSMQLDEAHRGFSFRQDGPLDMRMGGEGPSAADLVNG 155

Query: 151 ANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPA 210
                L  IL   GEE+++  +A AIV+ R+ AP  TT  L+ LI   V     + IHPA
Sbjct: 156 EEESTLADILYHFGEERRSRAVARAIVEARRRAPIATTAQLADLIAGVVRPEPGSPIHPA 215

Query: 211 TRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVM 270
           TRSFQ LRI VN+E+ EL +GL +AE+ LK GG L VV+FHSLEDR+VK+FF++RSG+  
Sbjct: 216 TRSFQGLRIAVNDELGELVRGLHAAERVLKPGGRLAVVTFHSLEDRIVKQFFSARSGRAA 275

Query: 271 AVRHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
                +P    PA   F+ +TK  V+P++ +   N R+RSAKLRAG RT
Sbjct: 276 QASRHLPGVERPAPKSFRLVTKGPVLPSEAETEVNPRARSAKLRAGERT 324


>gi|83592294|ref|YP_426046.1| s-adenosyl-methyltransferase MraW [Rhodospirillum rubrum ATCC
           11170]
 gi|123753270|sp|Q2RVT6|RSMH_RHORT RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|83575208|gb|ABC21759.1| methyltransferase [Rhodospirillum rubrum ATCC 11170]
          Length = 326

 Score =  254 bits (649), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 140/308 (45%), Positives = 194/308 (62%), Gaps = 11/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78
           H PV+L++V++ L P    + +D TFG GGYSR   +     VIA+DRDP A   G    
Sbjct: 7   HFPVMLDEVLSALEPHADGLYVDGTFGNGGYSRGLLERADCRVIAIDRDPAARVRGAALE 66

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
            ++  +F+L    F  ++  +  +G+   DGV  DLGVSSMQ+D  +RGFSFQK GPLDM
Sbjct: 67  AEFPGRFTLLSGCFGDMEQLLAAEGISRIDGVALDLGVSSMQLDQAERGFSFQKDGPLDM 126

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RM   G +A+D+VN  +   L  IL   GEE+++  +AHAIV+RR   PF  T DL+++I
Sbjct: 127 RMGQQGQTAADLVNTLDEDRLADILYHYGEERKSRWVAHAIVERRAETPFSRTADLATVI 186

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           +  V  S++  I PATRSFQALRI VN+E+ EL + L ++E+ L+AGG L+VV+FHSLED
Sbjct: 187 RGVVRKSRDG-IDPATRSFQALRIVVNDELGELERALGASERLLRAGGRLVVVAFHSLED 245

Query: 256 RLVKKFFASRSGKVMAVRHMIP--SNAH----PAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           R+VK F   R G+   V   +P  SNA     P  FQ+++++ V P   +   N RSRSA
Sbjct: 246 RIVKAFVRQRCGESEGVSRHLPQASNAGAGNPPPSFQAVSRRAVKPLDAETRVNPRSRSA 305

Query: 310 KLRAGMRT 317
           +LRA  RT
Sbjct: 306 RLRAVERT 313


>gi|154245796|ref|YP_001416754.1| S-adenosyl-methyltransferase MraW [Xanthobacter autotrophicus Py2]
 gi|263504945|sp|A7IGF4|RSMH_XANP2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|154159881|gb|ABS67097.1| S-adenosyl-methyltransferase MraW [Xanthobacter autotrophicus Py2]
          Length = 345

 Score =  254 bits (649), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 136/305 (44%), Positives = 191/305 (62%), Gaps = 11/305 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78
           H+PV+L +V+A L P      +D TFGAGGY+R         V+A+DRDP A++ G + +
Sbjct: 19  HLPVMLAEVLAHLAPKDAGRYVDGTFGAGGYTRGILNAADCRVLAIDRDPTAIAAGADLV 78

Query: 79  RDYKEQFSLFQATFSQL------QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            +   + +L    FS+L       D+ P   +DGVV D+GVSSMQ+D  +RGFSF++ GP
Sbjct: 79  AEAAGRLTLVNDRFSRLDAVAQEHDFSP---LDGVVLDIGVSSMQLDQAERGFSFRRDGP 135

Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           LDMRM  +G SA+D+V   +   L  ++  LGEE+ +  IA AIVK R  +P   T  L+
Sbjct: 136 LDMRMGDTGPSAADLVATLDEVQLAHLIWSLGEERHSRPIARAIVKARDESPITRTAQLA 195

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            ++ + V+  K   +HPATR+FQALRI VN E+ EL Q L +AE+AL  GG L+VV+FHS
Sbjct: 196 EIVSRIVW-QKPGEMHPATRTFQALRIAVNEELSELVQALVAAERALAPGGRLVVVTFHS 254

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK F ++R+    A RH+  +      F+ + K VV P  ++VA N R+RSAKLR
Sbjct: 255 LEDRIVKTFLSNRAKAPSASRHLPQAEGPEPAFRLVAKGVVEPGPDEVAGNPRARSAKLR 314

Query: 313 AGMRT 317
           A  RT
Sbjct: 315 AAERT 319


>gi|146342506|ref|YP_001207554.1| S-adenosyl-methyltransferase MraW [Bradyrhizobium sp. ORS278]
 gi|263445831|sp|A4YZL1|RSMH_BRASO RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|146195312|emb|CAL79337.1| S-adenosyl-dependent methyl transferase [Bradyrhizobium sp. ORS278]
          Length = 331

 Score =  253 bits (647), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 141/318 (44%), Positives = 193/318 (60%), Gaps = 5/318 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSNVIALDRDPFAVSCGQETM 78
           H+PVL  + +A+L P  G   +DATFGAGGY+R      G+ VIA+DRD  A++ G + +
Sbjct: 8   HIPVLGPEAVAMLAPRDGGTYVDATFGAGGYTRLILATPGTRVIAIDRDSTAIAGGADLV 67

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
            +   + +L ++ FS L +    + V   DG+V D+GVSSMQ+D   RGFSF+  GPLDM
Sbjct: 68  GEANGRLTLVESRFSALAEICAAQAVGQVDGIVMDVGVSSMQLDTAARGFSFRFDGPLDM 127

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RM+ +G SA+DV+ QA+ +DL  ++ I GEE+ +  IA AIV  R+     TT+ L+ ++
Sbjct: 128 RMADTGPSAADVIAQASERDLADVIYIFGEERHSRGIARAIVAARKEQQITTTRQLADIV 187

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
            + V  SK   IHPATR+FQALRI VN E++EL Q L +AE+ L   G L VVSFHSLED
Sbjct: 188 ARVVR-SKPGDIHPATRTFQALRILVNEELDELEQALSAAERILPPSGRLAVVSFHSLED 246

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           R+VK F A RS      RH+         FQ + +K VV  + +   N R+RSAKLR   
Sbjct: 247 RIVKTFLAERSKIGGGSRHLPEIAQQAPSFQLLNRKPVVADEAETVANPRARSAKLRGAA 306

Query: 316 RTVERSIEDDSFVHLPRL 333
           RT   +    S    PRL
Sbjct: 307 RTTAPAHPPSSSSAWPRL 324


>gi|23012863|ref|ZP_00052852.1| COG0275: Predicted S-adenosylmethionine-dependent methyltransferase
           involved in cell envelope biogenesis [Magnetospirillum
           magnetotacticum MS-1]
          Length = 319

 Score =  253 bits (646), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 141/305 (46%), Positives = 191/305 (62%), Gaps = 8/305 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78
           H+PVLL +VIA L P  G   +D TFGAGGYSR+     + +V A+DRDP AV+ G+   
Sbjct: 7   HIPVLLTEVIAALAPRDGGAYVDGTFGAGGYSRAILSAAACHVHAIDRDPSAVARGKTLE 66

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
                +FS+ +  F  +   + ++GV   DG+  D+GVSSMQID  +RGFSF K GPLDM
Sbjct: 67  EASAGRFSMIEGRFGDMAALLRERGVNQVDGIALDIGVSSMQIDQPERGFSFAKDGPLDM 126

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RM   G SA+D+VN     +L  I+   GEE+ + R+A AIV+ R+   F+ T +L+ +I
Sbjct: 127 RMETKGPSAADMVNDTPEGELANIIYRYGEERLSRRVAKAIVEARRIKRFERTGELAEVI 186

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           ++ V  S +  I PATR+FQALRI VN+E+ EL +GL +AE  L  GG L VV+FHSLED
Sbjct: 187 RRVVPRSGDG-IDPATRTFQALRIAVNDELGELERGLEAAEHLLAPGGHLAVVTFHSLED 245

Query: 256 RLVKKFFASRSGKVMAVRHMIP---SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           R+VK F  SRSG+       +P    N   A F  +++K + P QE+   N R+RSAKLR
Sbjct: 246 RVVKSFLKSRSGEASRPSRHVPQAQDNGPAASFTLLSRKAIAPGQEESRANPRARSAKLR 305

Query: 313 AGMRT 317
           A  RT
Sbjct: 306 AAART 310


>gi|149186210|ref|ZP_01864524.1| S-adenosyl-methyltransferase [Erythrobacter sp. SD-21]
 gi|148830241|gb|EDL48678.1| S-adenosyl-methyltransferase [Erythrobacter sp. SD-21]
          Length = 312

 Score =  253 bits (646), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 136/304 (44%), Positives = 197/304 (64%), Gaps = 11/304 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+PVLL++V+  LNP PG V++DATFGAGGY+R+  + G+ V A DRDP A++ G+ T R
Sbjct: 6   HIPVLLDEVVEALNPQPGDVLIDATFGAGGYTRALLERGATVHAFDRDPDAIASGR-TWR 64

Query: 80  DYKE---QFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           + ++   +  L    FS++ + +   GV   DGVV D+GVSSMQ+D   RGF+F   GPL
Sbjct: 65  ETEQTPPRLILHPHRFSEMLEVMRAAGVERVDGVVMDIGVSSMQLDQAHRGFAFSADGPL 124

Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           DMRMS  G SA+D +N A    +  ++   GEE+Q+ R+A AIV  R   P +TT DL+ 
Sbjct: 125 DMRMSQDGESAADFLNTAAESTIADVVYQYGEERQSRRVARAIVAAR---PLETTGDLAR 181

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           +++K +    +++  PATR+FQA+RI VN E++EL+QGL +AE  L+ GG L VVSFHSL
Sbjct: 182 VVRKALGHKPHDKKDPATRTFQAIRIHVNGELDELSQGLSAAEHLLREGGRLAVVSFHSL 241

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           EDR+VK+F    S      RH+  +     VF  ++ K + PT+ ++  N R+RS+ LR 
Sbjct: 242 EDRIVKRFLREASSTPSGSRHVPMAAQVDPVFSPVS-KAIKPTEAEIDRNPRARSSVLRH 300

Query: 314 GMRT 317
            +RT
Sbjct: 301 AVRT 304


>gi|83949459|ref|ZP_00958192.1| S-adenosyl-methyltransferase MraW [Roseovarius nubinhibens ISM]
 gi|83837358|gb|EAP76654.1| S-adenosyl-methyltransferase MraW [Roseovarius nubinhibens ISM]
          Length = 314

 Score =  253 bits (645), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 138/296 (46%), Positives = 187/296 (63%), Gaps = 5/296 (1%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYK 82
           ++E +IA + P  G   LD T GAGGY+R     G++ VI +DRDP A     +   +Y 
Sbjct: 1   MIEPLIAEVAPVTG-TWLDGTLGAGGYTRYLLAAGADKVIGVDRDPLAHDLAAQWGAEYG 59

Query: 83  EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI 142
           ++  L +  FS++ DY  D  +DGVV DLGVSSMQ+D   RGFSFQK GPLDMRMS  G 
Sbjct: 60  DRLELVRGVFSKMDDYATD--LDGVVLDLGVSSMQLDQPMRGFSFQKDGPLDMRMSQEGE 117

Query: 143 SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS 202
           +A+ +VN A+  DL  IL + GEE+ + RIA AIV+ R+ A   TT  LS +++K +   
Sbjct: 118 TAAHIVNSADEGDLADILFLYGEERASRRIARAIVRAREEAAIVTTLQLSEIVEKCLPRP 177

Query: 203 KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF 262
           K  + HPATRSFQALRI VN+E  ELA+GL +AE+ALK GG L VV+FHS+EDR+VK+F 
Sbjct: 178 KPGQAHPATRSFQALRIAVNDEYGELAEGLAAAERALKPGGKLAVVTFHSIEDRMVKRFI 237

Query: 263 ASR-SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
            SR  G     RH   +      F  +++K    ++ ++  N R+RSA+LR   RT
Sbjct: 238 QSRLGGAGRGSRHAPETIEVAPQFTQVSRKATSASEAEIDRNPRARSARLRVATRT 293


>gi|254451868|ref|ZP_05065305.1| S-adenosyl-methyltransferase MraW [Octadecabacter antarcticus 238]
 gi|198266274|gb|EDY90544.1| S-adenosyl-methyltransferase MraW [Octadecabacter antarcticus 238]
          Length = 325

 Score =  252 bits (643), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 142/301 (47%), Positives = 184/301 (61%), Gaps = 9/301 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETM 78
           H+PVL+  +IA  +P  G   LD TFG GGY++     G+N VI +DRDP      Q  +
Sbjct: 10  HIPVLIGPLIAACSPISG-TWLDGTFGVGGYTQRLLDAGANKVIGVDRDPAVFKMAQWAV 68

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138
            +      L + TFS L     D  +DG+V DLGVSSMQID  +RGFSF + GPLDMRM 
Sbjct: 69  DN--PAVELVEDTFSNLDAVASD--LDGIVLDLGVSSMQIDQAERGFSFMRDGPLDMRMG 124

Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198
             G SA+D+VN+ +  DL  IL   GEE+ + RIA  IV++R   P  TT  L+ LI+  
Sbjct: 125 QEGRSAADIVNETDETDLADILYTYGEERASRRIARKIVEQRDREPITTTLRLAKLIEGC 184

Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258
           +  SK  + HPATRSFQA+RI VN+E  +LA+GL +AE+ALK GG L VV+FHS+EDR+V
Sbjct: 185 LPRSKQGQSHPATRSFQAIRIAVNDEYGQLAEGLEAAERALKTGGYLAVVTFHSVEDRMV 244

Query: 259 KKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           K+F   R G +       P      PA F+ +TKK      ++VA N RSRSAKLR   R
Sbjct: 245 KRFLQQRGGGMGNANRYSPVLETEKPA-FEIVTKKARAADDDEVAQNPRSRSAKLRVARR 303

Query: 317 T 317
           T
Sbjct: 304 T 304


>gi|170748783|ref|YP_001755043.1| S-adenosyl-methyltransferase MraW [Methylobacterium radiotolerans
           JCM 2831]
 gi|263456464|sp|B1LYT9|RSMH_METRJ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|170655305|gb|ACB24360.1| S-adenosyl-methyltransferase MraW [Methylobacterium radiotolerans
           JCM 2831]
          Length = 353

 Score =  251 bits (642), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 135/305 (44%), Positives = 189/305 (61%), Gaps = 8/305 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQET 77
           HVPVLL +V+  L    G   +D TFGAGGY+R+         V+A+DRDP A++ GQ  
Sbjct: 24  HVPVLLAEVVEALG-TEGGTAVDGTFGAGGYTRALLAADPALQVVAIDRDPTAIAGGQAL 82

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           + +   +  L    F  L   + + G   VD VV D+GVSSMQ+D  +RGFSF+  GPLD
Sbjct: 83  VAESGGRLRLLPGRFGDLDGLLAEAGIAQVDRVVLDIGVSSMQLDAPERGFSFRSDGPLD 142

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRM+C G SA+D+VN+A+   L  I+   GEE+++  +A  I++ R+    +TT  L+ L
Sbjct: 143 MRMACDGPSAADLVNEADETVLADIIYHFGEERRSRAVARTILEARRRGRIETTAQLAEL 202

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           +   V     + IHPATR+FQ LRI VN+E+ EL + L +AE+ L+ GG L VV+FHSLE
Sbjct: 203 VAGVVRTEPGSHIHPATRTFQGLRIAVNDELGELVRALHAAERVLRPGGRLAVVTFHSLE 262

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           DR+VK+FFA+RSG+       +P      V  F+ +TK  V+P + + A N R+RSAKLR
Sbjct: 263 DRIVKQFFAARSGRSAQGSRHLPGGPVETVRSFRPVTKGPVLPGEAETARNPRARSAKLR 322

Query: 313 AGMRT 317
           A  RT
Sbjct: 323 AAERT 327


>gi|163732141|ref|ZP_02139587.1| S-adenosyl-methyltransferase, putative [Roseobacter litoralis Och
           149]
 gi|161394439|gb|EDQ18762.1| S-adenosyl-methyltransferase, putative [Roseobacter litoralis Och
           149]
          Length = 330

 Score =  251 bits (642), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 139/300 (46%), Positives = 186/300 (62%), Gaps = 5/300 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETM 78
           H+PVLL  ++  + P  G   LD TFGAGGY+R   + G++ VIA+DRDP A     +  
Sbjct: 13  HIPVLLSAILDAVAPVHGD-WLDGTFGAGGYTRGLLEAGADRVIAVDRDPLAFEMAADWA 71

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138
             Y  +       FS++  Y     +DGVV DLGVSSMQ+D  +RGFSF + GPLDMRMS
Sbjct: 72  DAYGARLVQQLGVFSKMDTYA--DALDGVVLDLGVSSMQLDLAERGFSFMRDGPLDMRMS 129

Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198
             G SA+D+VN+A+ + +  IL   GEE+ + RIA AI+  R  AP  TT  L+ +I++ 
Sbjct: 130 QEGPSAADIVNEASAETIANILFQYGEERASRRIAKAILTERAIAPITTTLHLAGIIERC 189

Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258
           +  SK  + H ATRSFQALRI VN+E  EL QGL +AE+ALK GG L VV+FHS+EDR+V
Sbjct: 190 LPRSKPGQSHAATRSFQALRIAVNDEYGELYQGLMAAERALKPGGQLAVVTFHSVEDRMV 249

Query: 259 KKFFASRSGKVMAVRHMIPSNAHPA-VFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           K+F  +R+G         P     A  F   ++K +V    +VA N R+RSAKLR  +RT
Sbjct: 250 KRFLTARAGAGGNANRFAPEVQRDAPAFTLRSRKAIVADYAEVAANPRARSAKLRIAVRT 309


>gi|254460590|ref|ZP_05074006.1| S-adenosyl-methyltransferase MraW [Rhodobacterales bacterium
           HTCC2083]
 gi|206677179|gb|EDZ41666.1| S-adenosyl-methyltransferase MraW [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 327

 Score =  251 bits (642), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 134/300 (44%), Positives = 186/300 (62%), Gaps = 5/300 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETM 78
           H+PVLL  ++   +P  G   LD TFGAGGY+R+    G++ VIA+DRDP A    Q   
Sbjct: 10  HIPVLLGPILKAADPISGG-WLDGTFGAGGYTRALLDAGADSVIAVDRDPLAFEMAQPWA 68

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138
             Y  +    +  FS + ++  D  +DGVV DLGVSSMQ+D  +RGFSF + GPLDMRM 
Sbjct: 69  DQYGARLIQQRGVFSDMAEFAQD--LDGVVLDLGVSSMQLDRAERGFSFMRDGPLDMRMG 126

Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198
             G SA+D+VN  + +++  IL   GEE+ + RIA AIV+ R   P  TT  L+ LI+K 
Sbjct: 127 QEGQSAADIVNDYDAEEIAEILYNYGEERASRRIARAIVELRAETPITTTLQLAGLIEKC 186

Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258
           +   K  + HPATRSFQALRI VN+E  EL +GL +AE+AL  GGLL +V+FHS+EDR+ 
Sbjct: 187 LPRKKPGQSHPATRSFQALRIAVNDEYGELYRGLMAAERALAPGGLLAIVTFHSVEDRMA 246

Query: 259 KKFFASRSGKVMAVRHMIPS-NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           K+F  SR+G         P  +     F+ +++K +  ++ ++  N R+RSAKLR   RT
Sbjct: 247 KRFLQSRAGTTGNANRFAPQLDVEKPAFELLSRKAITASEFELENNVRARSAKLRLARRT 306


>gi|329848184|ref|ZP_08263212.1| S-adenosyl-methyltransferase MraW [Asticcacaulis biprosthecum C19]
 gi|328843247|gb|EGF92816.1| S-adenosyl-methyltransferase MraW [Asticcacaulis biprosthecum C19]
          Length = 317

 Score =  251 bits (640), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 136/307 (44%), Positives = 193/307 (62%), Gaps = 13/307 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRD----PFAVSCGQ 75
           H+ VLL +V+ +L     K+I+D TFGAGGYSR+F   G+ V+A DRD    PF  +  Q
Sbjct: 7   HLSVLLPEVLTVLGNLEDKLIVDGTFGAGGYSRAFLLGGARVVAFDRDARVRPFVEALSQ 66

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E    + ++F      FS++ + + + G    D +V D+GVSSMQ+D  DRGFSF + GP
Sbjct: 67  E----FPDRFQWVNRCFSEMAEGLAELGHASCDAIVLDIGVSSMQLDEADRGFSFMRDGP 122

Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           LDMRMS  G SA+D+VN  +  D+  ++ + GEE ++  IA AIV+RR++ PF+ T DL+
Sbjct: 123 LDMRMSVDGRSAADIVNDDDKDDIAHVIWLYGEEHKSRSIASAIVRRREAQPFERTLDLA 182

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            ++++ +   +   +HPATR+FQALRI VN+E+ EL + L  AE  L+  G+L VV+FHS
Sbjct: 183 EVVERALGGRRGAPVHPATRTFQALRIAVNDELGELERALEVAEILLRPDGVLAVVTFHS 242

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           LEDR+VK FF  RSGK+       P        V+  IT K V  ++ ++A N RSRSAK
Sbjct: 243 LEDRIVKNFFNDRSGKMAGGSRHAPQKLATRTPVYTLITPKAVQASEAEIAGNPRSRSAK 302

Query: 311 LRAGMRT 317
           LRA  R 
Sbjct: 303 LRAVRRN 309


>gi|89055260|ref|YP_510711.1| S-adenosyl-methyltransferase MraW [Jannaschia sp. CCS1]
 gi|122498265|sp|Q28NM6|RSMH_JANSC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|88864809|gb|ABD55686.1| methyltransferase [Jannaschia sp. CCS1]
          Length = 327

 Score =  250 bits (639), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 140/300 (46%), Positives = 185/300 (61%), Gaps = 4/300 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETM 78
           H+PVLL  ++  + P  G V LD TFGAGGY+R   + G++ VI +DRDP A     +  
Sbjct: 10  HIPVLLGAILREVAPVSG-VWLDGTFGAGGYARGLLEGGADTVIGVDRDPLAFEMAADWA 68

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138
             Y +   L + TFS L D + D+ +DGV  DLGVSSMQ+D  +RGFSF + GPLDMRM 
Sbjct: 69  GSYGDALRLKEGTFSNL-DTLADEPLDGVALDLGVSSMQLDLAERGFSFMRDGPLDMRMG 127

Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198
             G+SA D+VN A  K L  IL   GEE+ A RIA AIV  R      +T  L+ +++K 
Sbjct: 128 QIGVSAEDLVNDAPEKLLADILFQYGEERAARRIAKAIVAERLKCRINSTLQLAGIVEKC 187

Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258
           +   K  + HPATRSFQA+RI VN+E  +LAQGL +AE+AL+ GG L VV+FHS EDR+V
Sbjct: 188 LPSKKPGQSHPATRSFQAIRIAVNDEFGQLAQGLMAAERALRPGGKLAVVTFHSSEDRIV 247

Query: 259 KKFFASRSGKVMAVRHMIPSNAHPAVFQSIT-KKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           KKF + RS          P  A      ++T +K + P  +++A N R+RSAKLR   RT
Sbjct: 248 KKFMSERSSTGGGGSRYAPEAAAKVPGFTLTPRKAIPPDADEIARNTRARSAKLRIATRT 307


>gi|299131933|ref|ZP_07025128.1| S-adenosyl-methyltransferase MraW [Afipia sp. 1NLS2]
 gi|298592070|gb|EFI52270.1| S-adenosyl-methyltransferase MraW [Afipia sp. 1NLS2]
          Length = 333

 Score =  250 bits (639), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 144/318 (45%), Positives = 198/318 (62%), Gaps = 5/318 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETM 78
           H+ VL  + +  L P  G + +DATFGAGGYS+   ++ G+ VI +DRD  AV+   + +
Sbjct: 8   HISVLGREAVEFLAPHAGGIYVDATFGAGGYSKRILEVAGTRVIGIDRDRTAVAEAFDLV 67

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
              + + ++ Q  FS L +    +G   VDG+V D+GVSSMQ+D  +RGFSF+  G LDM
Sbjct: 68  ERAEGRLTVVQDRFSNLAEVCAAEGAPQVDGIVMDIGVSSMQLDRAERGFSFRHDGALDM 127

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RM   G SA+DVV  A+ KDL  I+ I GEE+ +  +A AIVK RQ  P  TT+ L+ ++
Sbjct: 128 RMGQEGASAADVVAVASEKDLANIIYIFGEERHSRAVARAIVKARQDNPIVTTKALADIV 187

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
              V  ++ N IHPATR+FQALRIF+N E++EL   L ++E+ALK GG L+VVSFHSLED
Sbjct: 188 SSVVR-ARPNEIHPATRTFQALRIFINEELDELQTALHASERALKPGGRLVVVSFHSLED 246

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           R+VK F ASR+ +    RH+         F+ +TK+ VV    + A N R+RSAKLRA  
Sbjct: 247 RIVKNFLASRAKQGGGSRHLPEVEQIAPSFEILTKRPVVANDNETAVNPRARSAKLRAAQ 306

Query: 316 RTVERSIEDDSFVHLPRL 333
           RT   S  +D     P L
Sbjct: 307 RTANPSHHEDMSFDWPTL 324


>gi|300021770|ref|YP_003754381.1| S-adenosyl-methyltransferase MraW [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299523591|gb|ADJ22060.1| S-adenosyl-methyltransferase MraW [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 345

 Score =  250 bits (638), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 126/292 (43%), Positives = 187/292 (64%), Gaps = 8/292 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78
           H+PVL  +V+  L P  G+  +D TFGAGGY+R+  +     V+ALDRDP A+      +
Sbjct: 21  HIPVLRSEVLETLAPKAGETYIDGTFGAGGYTRAILEAADCRVLALDRDPNAIRGAAPLL 80

Query: 79  RDYKEQFSLFQATFSQL----QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
            ++  + +L ++ FS+L    QD +    VDGVV D+GVSSMQ+D  +RGFSFQ  GPLD
Sbjct: 81  AEFAPRLTLVESPFSRLEEVAQDALGGAQVDGVVLDIGVSSMQLDDAERGFSFQHDGPLD 140

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRMS +G + +D VN A  + +  ++   GEE ++  IA AIV+RR   P+  T++L+  
Sbjct: 141 MRMSSNGQTVADFVNSAAEEIIANVIYAFGEEHKSRAIARAIVRRRAETPYARTRELADT 200

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           + +  +  K +  HPATR+FQALRIF+N+E+ ELA  L +AE+ L+ GG L+VVSFHSLE
Sbjct: 201 VSRVFHGRKVDGRHPATRTFQALRIFINDELGELASALSAAERVLRPGGRLVVVSFHSLE 260

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSN---AHPAVFQSITKKVVVPTQEDVAFN 303
           DR+VKKF A RSGK  +V   +P+    + P  F+ +  + + P++ ++  N
Sbjct: 261 DRIVKKFIAERSGKTQSVSRHLPTETIKSTPPSFRIVNSRPLTPSKGELDVN 312


>gi|220925316|ref|YP_002500618.1| S-adenosyl-methyltransferase MraW [Methylobacterium nodulans ORS
           2060]
 gi|263456456|sp|B8IMX2|RSMH_METNO RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|219949923|gb|ACL60315.1| S-adenosyl-methyltransferase MraW [Methylobacterium nodulans ORS
           2060]
          Length = 339

 Score =  250 bits (638), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 139/307 (45%), Positives = 198/307 (64%), Gaps = 10/307 (3%)

Query: 20  HVPVLLEKVIALL--NPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQ 75
           H+PVLL++V + L     PG +++D TFGAGGY+R+  +   G  VIA+DRDP A++ G+
Sbjct: 7   HIPVLLKEVRSALRLGEGPG-IVVDGTFGAGGYTRAILEADPGQRVIAIDRDPTAIATGR 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                   +  L Q  F +L   V  +G   VDGVV D+GVSSMQ+D   RGFSF++ GP
Sbjct: 66  GLAAAMAGRLMLVQGRFGELDRLVRAQGIETVDGVVLDIGVSSMQLDQAQRGFSFRQDGP 125

Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           LDMRM   G SA+D+VN+A+  +L  I+   GEE++A  +A AI++ R+     TT  L+
Sbjct: 126 LDMRMESGGTSAADLVNEASEAELADIIYHYGEERRARAVARAILEARRRGRIATTATLA 185

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            ++   V     + IHPATR+FQALRI VN+E+ EL + L +AE+ L+ GG L VV+FHS
Sbjct: 186 EIVASVVRPEPGSGIHPATRTFQALRIAVNDELGELQRALHAAERILRPGGRLAVVTFHS 245

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRSAK 310
           LEDR+VK+FF++RSG+ ++    +P    PA   F  +TK  + P++ +   N R+RSAK
Sbjct: 246 LEDRIVKQFFSARSGRAVSASRHLPMAEKPAPRSFTLVTKGPIGPSEAEATANPRARSAK 305

Query: 311 LRAGMRT 317
           LRAG RT
Sbjct: 306 LRAGERT 312


>gi|89067948|ref|ZP_01155392.1| S-adenosyl-methyltransferase MraW [Oceanicola granulosus HTCC2516]
 gi|89046546|gb|EAR52602.1| S-adenosyl-methyltransferase MraW [Oceanicola granulosus HTCC2516]
          Length = 320

 Score =  250 bits (638), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 143/311 (45%), Positives = 195/311 (62%), Gaps = 15/311 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRD 67
           MS+A  HT     PVL+E +I    P  G   LD TFG GGY+R+  + G+ +VI +DRD
Sbjct: 1   MSAAAPHT-----PVLIEPIIEACAPVSG-TWLDGTFGFGGYARALLEAGAAHVIGIDRD 54

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
           P A         + +   +L + TFS+L  +   + +DGVV DLGVSSMQ+D  +RGFSF
Sbjct: 55  PLAHELAGWVADEPR--VTLIRGTFSELDRH--GEALDGVVLDLGVSSMQLDRPERGFSF 110

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
              GPLDMRMS  G SA+D+VN+ + + +  IL   GEE+ + RIA AIV+ R   P  T
Sbjct: 111 MSDGPLDMRMSQDGPSAADLVNELDERTIADILFNYGEERASRRIARAIVRAR---PLAT 167

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T +L++L++  +   K  + HPATR+FQALRI VNNE  ELA+GL +AE+AL  GGLL V
Sbjct: 168 TAELAALVEGCLPRPKPGQSHPATRTFQALRIAVNNEYGELAEGLMAAERALAPGGLLAV 227

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRS 306
           V+FHS+EDR+VK+F  +R+G+        P  A  P  F  +T+K +   + +VA N R+
Sbjct: 228 VTFHSVEDRMVKRFMQARAGQTGGPSRHAPDVAQAPPAFGLVTRKAIGADEAEVARNPRA 287

Query: 307 RSAKLRAGMRT 317
           RSAKLR   RT
Sbjct: 288 RSAKLRIARRT 298


>gi|114799717|ref|YP_761709.1| S-adenosyl-methyltransferase MraW [Hyphomonas neptunium ATCC 15444]
 gi|123128411|sp|Q0BXT4|RSMH_HYPNA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|114739891|gb|ABI78016.1| S-adenosyl-methyltransferase MraW [Hyphomonas neptunium ATCC 15444]
          Length = 342

 Score =  249 bits (637), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 152/329 (46%), Positives = 209/329 (63%), Gaps = 9/329 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78
           H+PV+L +V+  L PA G+VI+D TFG GGY+ +  K  +  V+ +DRD  A+    E M
Sbjct: 15  HLPVMLAEVLTALAPADGEVIVDGTFGGGGYTTAILKAANCTVLGIDRDLDAI-VRAEKM 73

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
                +       F  L       G   VDGVV D+GVSS QID  DRGFSF K GPLDM
Sbjct: 74  AQANPRLVPLLGCFGDLDTLAEQAGHASVDGVVLDIGVSSFQIDQADRGFSFMKDGPLDM 133

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RM  SG SA+DVVN  + K L  ++  LGEEK + RIA  +V+RR  APF+TT DL++++
Sbjct: 134 RMGGSGPSAADVVNTMSEKGLADVIFRLGEEKNSRRIARVLVQRRVQAPFETTADLAAVV 193

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           ++ V   +  R HPAT +FQA+R++VN+E+ ELA+GLR+AE+ LK GG L+VV+FHSLED
Sbjct: 194 EEAVGGRRGARSHPATLTFQAIRMYVNDELGELARGLRAAERILKPGGRLVVVTFHSLED 253

Query: 256 RLVKKFFASRSGKVM-AVRHMIPSNAHPA-VFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           RLVK++   R+G V    RHM   +  PA  F+    K V P++++V  N R+RSAKLRA
Sbjct: 254 RLVKQWLRERAGAVPGGSRHMPLMSKGPAPAFELQENKAVQPSEKEVETNPRARSAKLRA 313

Query: 314 GMRTVERSIEDDSF--VHLPRLPTLSQFR 340
            +RT   +  D++   ++LP L  L + R
Sbjct: 314 AIRTNADAALDEASDGMNLPPLAELEKSR 342


>gi|126729243|ref|ZP_01745057.1| S-adenosyl-methyltransferase MraW [Sagittula stellata E-37]
 gi|126710233|gb|EBA09285.1| S-adenosyl-methyltransferase MraW [Sagittula stellata E-37]
          Length = 330

 Score =  249 bits (636), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 139/300 (46%), Positives = 190/300 (63%), Gaps = 9/300 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETM 78
           HVPVLL  ++  + P  G V +D TFGAGGY+R   + G+  VI +DRDP A       +
Sbjct: 13  HVPVLLAPLLREVAPVRG-VWIDGTFGAGGYARGLVEAGAERVIGIDRDPLAHEMAAAWL 71

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138
            D+    SL +  F  + D V D   DGVV DLGVSSMQ+D  +RGFSF + GPLDMRM 
Sbjct: 72  DDWP-AISLVRENFCNM-DKVADSA-DGVVLDLGVSSMQLDLAERGFSFMRDGPLDMRMG 128

Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198
            +G +A+D+VN  +  +L  +L + GEE+Q+ RIA  IV+ R   PF TT +L+ LI++T
Sbjct: 129 QAGPTAADLVNDLSESELADVLYVYGEERQSRRIARRIVEHR---PFLTTLELAGLIERT 185

Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258
           +  +K  + H ATRSFQALRI VN E E L QGL +AE+ LK GG+L VV+FHS+EDR+V
Sbjct: 186 IGRTKPGQAHAATRSFQALRIAVNGEYEALWQGLMAAERVLKPGGMLAVVTFHSVEDRMV 245

Query: 259 KKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           K+F      +   V R+   +    A F+ +T+K V P ++++  N R+RSAKLR   RT
Sbjct: 246 KRFLQLHGDRKRHVNRYATETPEAEAPFEIVTRKAVGPDKDELTANPRARSAKLRVARRT 305


>gi|103487373|ref|YP_616934.1| methyltransferase [Sphingopyxis alaskensis RB2256]
 gi|123078262|sp|Q1GRX1|RSMH_SPHAL RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|98977450|gb|ABF53601.1| methyltransferase [Sphingopyxis alaskensis RB2256]
          Length = 325

 Score =  248 bits (633), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 137/305 (44%), Positives = 196/305 (64%), Gaps = 10/305 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H PVLL++VIA L  APG+  +DATFGAGGY+R+    G+ VIA DRDP A++ G+  + 
Sbjct: 10  HDPVLLDEVIAALAIAPGERHVDATFGAGGYTRAMLAAGAEVIACDRDPDAIAGGEALVA 69

Query: 80  DYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
           +   + +L    F ++   + ++G   VDG+ FD+GVSSMQ+D G+RGFSFQK GPLDMR
Sbjct: 70  EADGRLTLIHGRFGEIDRLLAERGIDAVDGITFDIGVSSMQLDQGERGFSFQKDGPLDMR 129

Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
           M+  G SA+D +N+A+  ++  +L   G+E+Q+ R+A AIV  R   P   T +L+S+++
Sbjct: 130 MAQEGESAADWLNRADEYEIADVLYHYGDERQSRRVARAIVAAR---PLTRTSELASVVR 186

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
           K +         PAT+SFQA+RI +N E++EL  GL +AE+ L+ GG L VVSFHS EDR
Sbjct: 187 KALRHPPGAPKDPATKSFQAIRIHINRELDELVAGLAAAERVLRPGGRLAVVSFHSTEDR 246

Query: 257 LVKKFFASRS-GKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           +VK F   RS G     RH     + A  A F++  +K V P + + A N R+RSA LR+
Sbjct: 247 IVKHFLRERSGGDAAGSRHRPAPTAAARAATFETPARK-VRPGKAEEARNPRARSATLRS 305

Query: 314 GMRTV 318
            +RT 
Sbjct: 306 AVRTA 310


>gi|217979581|ref|YP_002363728.1| S-adenosyl-methyltransferase MraW [Methylocella silvestris BL2]
 gi|263456483|sp|B8ETL4|RSMH_METSB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|217504957|gb|ACK52366.1| S-adenosyl-methyltransferase MraW [Methylocella silvestris BL2]
          Length = 346

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 146/304 (48%), Positives = 191/304 (62%), Gaps = 7/304 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF-CKMGSNVIALDRDPFAVSCGQETM 78
           H+PVL ++++ L  P    + LDATFGAGGYSR      G+ V+A+DRDP A++ G   +
Sbjct: 19  HIPVLRDEILELAAPQADGLYLDATFGAGGYSRGLLATQGARVLAIDRDPGAIAAGAGLI 78

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
            +   + +L +A FS L       G+   D  +FD+GVSSMQ+D   RGFSF+  GPLDM
Sbjct: 79  AESNGRLTLVEARFSDLAAVAERLGLGAFDAALFDIGVSSMQLDEAARGFSFRFDGPLDM 138

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RM  SG SA+D+VN A+ + L  IL   GEE+ + RIA AIV  R  APF++T  L+++I
Sbjct: 139 RMQQSGPSAADIVNDADEEALADILYYFGEERASRRIAKAIVMDRAKAPFRSTAALAAMI 198

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
            + V   K   IHPATRSFQALRI VN+E+ EL  GL  AE  LK GG L VV+FHSLED
Sbjct: 199 AR-VCPGKPGDIHPATRSFQALRIAVNDELGELVAGLAGAEARLKPGGRLAVVTFHSLED 257

Query: 256 RLVKKFFASRSGKVMAV--RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           R+VK FFA RSG+  A   R        P  F    ++ V P+  ++A N R+RSAKLR 
Sbjct: 258 RIVKLFFAGRSGRGEAPSRRLPGEPIPPPPTFAVSGRQPVTPSAAEIAANPRARSAKLRH 317

Query: 314 GMRT 317
           G+RT
Sbjct: 318 GVRT 321


>gi|332187132|ref|ZP_08388872.1| S-adenosyl-methyltransferase MraW [Sphingomonas sp. S17]
 gi|332012832|gb|EGI54897.1| S-adenosyl-methyltransferase MraW [Sphingomonas sp. S17]
          Length = 326

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 138/311 (44%), Positives = 199/311 (63%), Gaps = 10/311 (3%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDP 68
           MS A++     H+PVLL++V+  L   PG+  +D TFGAGGY+R+    G+ VIA DRDP
Sbjct: 1   MSPAVNDA--PHIPVLLDEVLDALAILPGETHVDGTFGAGGYTRAMLGRGAKVIAFDRDP 58

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
            A++ GQ  ++  +   +L    FS L D   +  VDGVV D+GVSSMQ+D  +RGFSFQ
Sbjct: 59  DAIANGQALIQ-AEPGLALVHREFSGL-DQALEAQVDGVVLDIGVSSMQLDQAERGFSFQ 116

Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             GPLDMRM+ +G SA+D +N A+   +  +L   GEE ++ R+A AIV  R   P   T
Sbjct: 117 GDGPLDMRMAQAGESAADFLNTADEAAIADVLYHYGEEPRSRRVAQAIVAAR---PLMRT 173

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L++++++ + +  +++  PATR+FQA+RI VN E+EELA+GL +AE+ALK GG L +V
Sbjct: 174 GELAAVVRRALGYRPHDKKDPATRTFQAIRIHVNRELEELAEGLAAAERALKPGGRLAIV 233

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITKKVVVPTQEDVAFNRRS 306
           +FHSLEDR+VK+FF  R+G++      +P    A    F ++ K V     E +A N R+
Sbjct: 234 TFHSLEDRMVKRFFRERAGQLPGGSRHLPQQVAAQAPSFTAVGKAVRAGAAE-LARNPRA 292

Query: 307 RSAKLRAGMRT 317
           RSA LR   RT
Sbjct: 293 RSATLRFATRT 303


>gi|262831538|sp|Q1QNV1|RSMH_NITHX RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 332

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 150/323 (46%), Positives = 202/323 (62%), Gaps = 7/323 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQETM 78
           HVPVL  + +A+L P  G V +DATFGAGGYSR+   +  + VI +DRD  A++ G   +
Sbjct: 8   HVPVLGREAVAMLAPRAGGVYVDATFGAGGYSRAILAVADTRVIGIDRDRSAIAGGFALV 67

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
            +   + +L +  FS L      +G   VDG+V D+GVSSMQ+D  DRGFSF+  GPLDM
Sbjct: 68  EESGGRLTLVEDRFSNLAAVCAAEGADVVDGIVMDVGVSSMQLDEADRGFSFRLDGPLDM 127

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RMS  G +A+DVV +A+  DL  I+ I GEE+++  +A AIV  R+ AP  TT+ L+ ++
Sbjct: 128 RMSGHGPTAADVVARASETDLANIIYIFGEERRSRAVARAIVAARRDAPVATTRALADIV 187

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
            K V  +K + IHPATR+FQALRIFVN E++EL   L +AE+ L+ GG L VVSFHSLED
Sbjct: 188 SKVVR-AKPHEIHPATRTFQALRIFVNEELDELIAALAAAERVLRPGGRLAVVSFHSLED 246

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           R+VK FFA R       RH          F  +T++ V   QE+V+ N R+RSAKLRA  
Sbjct: 247 RIVKNFFALRGKTGGGSRHRPEIERAAPSFAILTRRPVTAGQEEVSANPRARSAKLRAAE 306

Query: 316 RTVERSIEDDSFVHLPRLPTLSQ 338
           RT   +  DD     P  P+L+ 
Sbjct: 307 RTAAPATADDG--ESPGWPSLAN 327


>gi|92116827|ref|YP_576556.1| methyltransferase [Nitrobacter hamburgensis X14]
 gi|91799721|gb|ABE62096.1| methyltransferase [Nitrobacter hamburgensis X14]
          Length = 399

 Score =  248 bits (632), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 150/323 (46%), Positives = 202/323 (62%), Gaps = 7/323 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQETM 78
           HVPVL  + +A+L P  G V +DATFGAGGYSR+   +  + VI +DRD  A++ G   +
Sbjct: 75  HVPVLGREAVAMLAPRAGGVYVDATFGAGGYSRAILAVADTRVIGIDRDRSAIAGGFALV 134

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
            +   + +L +  FS L      +G   VDG+V D+GVSSMQ+D  DRGFSF+  GPLDM
Sbjct: 135 EESGGRLTLVEDRFSNLAAVCAAEGADVVDGIVMDVGVSSMQLDEADRGFSFRLDGPLDM 194

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RMS  G +A+DVV +A+  DL  I+ I GEE+++  +A AIV  R+ AP  TT+ L+ ++
Sbjct: 195 RMSGHGPTAADVVARASETDLANIIYIFGEERRSRAVARAIVAARRDAPVATTRALADIV 254

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
            K V  +K + IHPATR+FQALRIFVN E++EL   L +AE+ L+ GG L VVSFHSLED
Sbjct: 255 SKVVR-AKPHEIHPATRTFQALRIFVNEELDELIAALAAAERVLRPGGRLAVVSFHSLED 313

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           R+VK FFA R       RH          F  +T++ V   QE+V+ N R+RSAKLRA  
Sbjct: 314 RIVKNFFALRGKTGGGSRHRPEIERAAPSFAILTRRPVTAGQEEVSANPRARSAKLRAAE 373

Query: 316 RTVERSIEDDSFVHLPRLPTLSQ 338
           RT   +  DD     P  P+L+ 
Sbjct: 374 RTAAPATADDG--ESPGWPSLAN 394


>gi|87199147|ref|YP_496404.1| methyltransferase [Novosphingobium aromaticivorans DSM 12444]
 gi|123736248|sp|Q2G9A3|RSMH_NOVAD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|87134828|gb|ABD25570.1| methyltransferase [Novosphingobium aromaticivorans DSM 12444]
          Length = 329

 Score =  247 bits (630), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 142/311 (45%), Positives = 197/311 (63%), Gaps = 18/311 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQ---E 76
           H+PVLLE+V+A L+P PG +I+DATFGAGGY+R     G+ V A DRDP A++ G+   E
Sbjct: 11  HIPVLLEEVVAALDPKPGDLIVDATFGAGGYTRRLLDAGATVHAFDRDPDAIAAGKLWGE 70

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           T    + +  L    FS++ + + + G   V GVVFD+GVSSMQ+D   RGF+F   GPL
Sbjct: 71  TC-GKEPRLVLHPRRFSEIAEGLAEAGIAGVQGVVFDIGVSSMQLDQAARGFAFSSDGPL 129

Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           DMRMS  G SA+D +N+A+  ++  +L   GEE+Q+ RIA AIV  R   P  TT   ++
Sbjct: 130 DMRMSQEGPSAADFLNEADEGEIADVLYRYGEERQSRRIARAIVAAR---PLTTTAQFAA 186

Query: 194 LIQKTVYFSKNNR-----IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +++K + +  + +       PATRSFQA+RI VN E++EL QGL +AEK L  GG + VV
Sbjct: 187 VVRKALGYRPDIKGPKAPKDPATRSFQAVRIHVNGELDELVQGLAAAEKVLVPGGRIAVV 246

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           SFHSLEDR+VK+F    +G V A    +P   +   AVF+  +   + PT E+ A N R+
Sbjct: 247 SFHSLEDRIVKQFLREGAGAVPAGSRHLPQLESKVQAVFEKPS-GAIRPTPEEEARNPRA 305

Query: 307 RSAKLRAGMRT 317
           RSA LR  +RT
Sbjct: 306 RSATLRCAVRT 316


>gi|148257427|ref|YP_001242012.1| S-adenosyl-methyltransferase MraW [Bradyrhizobium sp. BTAi1]
 gi|263445839|sp|A5EPL2|RSMH_BRASB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|146409600|gb|ABQ38106.1| S-adenosyl-dependent methyl transferase [Bradyrhizobium sp. BTAi1]
          Length = 331

 Score =  246 bits (629), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 143/318 (44%), Positives = 191/318 (60%), Gaps = 5/318 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETM 78
           HVPVL  + +A+L P  G   +DATFGAGGY+R   +  G+ VI +DRD  A++ G   +
Sbjct: 8   HVPVLGPEAVAMLAPREGGTYIDATFGAGGYTRLILQSPGTRVIGIDRDSTAIAGGAALV 67

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
            +   + +L +  FS + D     G   VDG+V D+GVSSMQ+D   RGFSF+  GPLDM
Sbjct: 68  AEAGARLTLVENRFSAIADICASLGLSQVDGIVMDVGVSSMQLDSAARGFSFRFDGPLDM 127

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RM  +G +A+DVV QA  +DL  I+ I GEE+ +  +A AIV  R+  P  TT+ L+ ++
Sbjct: 128 RMGETGPTAADVVAQAAERDLADIIYIFGEERHSRAVARAIVAARKEQPITTTRQLADIV 187

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
            + V  SK   IHPATR+FQ LRI VN E++EL Q L +AE+ L  GG L VVSFHSLED
Sbjct: 188 ARVVR-SKPGDIHPATRTFQGLRILVNEELDELEQALSAAEQVLAPGGRLAVVSFHSLED 246

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           R+VK F A RS      RH+         FQ + +K VV  Q ++  N R+RSAKLR   
Sbjct: 247 RIVKTFLAERSKTGGGSRHLPEIAQETPTFQLLNRKPVVADQSEIEANPRARSAKLRGAE 306

Query: 316 RTVERSIEDDSFVHLPRL 333
           RT   +    +    PRL
Sbjct: 307 RTAAPARLPPASSSWPRL 324


>gi|326388910|ref|ZP_08210492.1| methyltransferase [Novosphingobium nitrogenifigens DSM 19370]
 gi|326206510|gb|EGD57345.1| methyltransferase [Novosphingobium nitrogenifigens DSM 19370]
          Length = 322

 Score =  246 bits (628), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 138/306 (45%), Positives = 193/306 (63%), Gaps = 13/306 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+PVL+++V+  L   PG  ++D TFGAGGYSR+    G+ V A DRDP A++ G+    
Sbjct: 10  HIPVLIDEVLVALGAGPGMTMVDGTFGAGGYSRALVAAGARVHAFDRDPDAIAAGRLLAE 69

Query: 80  DYKE--QFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
              E  Q  L    FS+L + + + GV   DGVVFD+GVSSMQ+D  +RGF+F   GPLD
Sbjct: 70  CAGEDPQLVLHHRRFSELAEGLAEAGVEQVDGVVFDIGVSSMQLDQANRGFAFSSDGPLD 129

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRM+  G SA+D +N A+   +  +L I GEE+Q+ RIA AIV  R   P  TT+  + +
Sbjct: 130 MRMAQEGPSAADFLNTADEAAIADVLYIYGEERQSRRIARAIVAAR---PLTTTRQFAEV 186

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           ++K + +       PATRSFQA+RI VN E++EL  GL +AE+ L  GG L VV+FHSLE
Sbjct: 187 VRKALGYRPGAPKDPATRSFQAVRIHVNGELDELTAGLAAAERVLAPGGRLAVVTFHSLE 246

Query: 255 DRLVKKFFASRSGKVMA-VRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           DR+VK+F    +G V A  RH+  + S A P VF+  +   + P +E++A N R+RSA L
Sbjct: 247 DRIVKQFLREAAGLVPAGSRHLPVLASTARP-VFEKPSSP-IRPGEEELARNPRARSATL 304

Query: 312 RAGMRT 317
           R  +R+
Sbjct: 305 RWAVRS 310


>gi|320450513|ref|YP_004202609.1| S-adenosyl-methyltransferase MraW [Thermus scotoductus SA-01]
 gi|320150682|gb|ADW22060.1| S-adenosyl-methyltransferase MraW [Thermus scotoductus SA-01]
          Length = 286

 Score =  246 bits (627), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 137/311 (44%), Positives = 194/311 (62%), Gaps = 34/311 (10%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVS-- 72
           + I +H+PVL E+V+ LL   PG+V +DAT G  G+++   + G  VI LD+DP AV+  
Sbjct: 2   NAITEHIPVLYEEVLNLLQVRPGQVYVDATLGGAGHTKGILERGGLVIGLDQDPEAVARA 61

Query: 73  --CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSF 127
              G   +R       +FQ  F  L++ + + GV    G++ DLGVSS  ++   RGFS+
Sbjct: 62  RALGLPGLR-------VFQQNFRHLKEVLQEAGVSQVAGILADLGVSSFHLEDPKRGFSY 114

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           Q+ GPLDMRM   G +A +VVN   ++DL RIL  LGEEKQA RIA AIV+RR+ AP +T
Sbjct: 115 QREGPLDMRMGEEGPTAYEVVNTLPLEDLRRILRDLGEEKQAHRIAKAIVERRRKAPIRT 174

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T +L+ ++++ V F K    HPA ++FQA+R++VN+E+  L + LR AE+ L  GG L+V
Sbjct: 175 TLELAEVVRQAVGFRKAG--HPARKTFQAIRMYVNDELGALEEFLRQAEEVLAPGGRLLV 232

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           ++FHSLEDR+VK+F    S KV+                  TKK + P+ E+VA N RSR
Sbjct: 233 ITFHSLEDRVVKRFLKESSLKVL------------------TKKPITPSPEEVAKNPRSR 274

Query: 308 SAKLRAGMRTV 318
           SAKLRA  + V
Sbjct: 275 SAKLRAAEKEV 285


>gi|254292761|ref|YP_003058784.1| S-adenosyl-methyltransferase MraW [Hirschia baltica ATCC 49814]
 gi|254041292|gb|ACT58087.1| S-adenosyl-methyltransferase MraW [Hirschia baltica ATCC 49814]
          Length = 336

 Score =  245 bits (626), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 142/326 (43%), Positives = 195/326 (59%), Gaps = 10/326 (3%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQE 76
           G H+PVLLE V+  L P  G+V +D T+G GGYSR+   +    V+A+DRDP A+    +
Sbjct: 5   GTHIPVLLEPVVEALAPTDGRVYIDGTYGGGGYSRAVMAVADCTVLAVDRDPDAMQRAWD 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +       F +L       G   VDGV+ DLGVSS QID  +RGFSF + GPL
Sbjct: 65  HA-GKDPRLKPAPGRFGELDLAARAAGHEYVDGVMLDLGVSSYQIDQAERGFSFMRDGPL 123

Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           DMRM   G SA+D VN  + KDL  I    GEE  + RIA  IVKRR    F  T DL++
Sbjct: 124 DMRMEQHGPSAADAVNLLSEKDLASIFHFYGEEPASRRIAKFIVKRRDEEKFTRTLDLAN 183

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           LI+ +V   +  + HPATR FQALR++VN+E+ EL + L ++E+ + +GG L+VV+FHSL
Sbjct: 184 LIESSVGGRRGKKTHPATRVFQALRLYVNDELGELVRALVASEEIITSGGRLVVVTFHSL 243

Query: 254 EDRLVKKFFASRSGKV-MAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           EDR+VK F   R G +    RH    P+   P  F+ + +K + PT E+VA N RSRS+K
Sbjct: 244 EDRIVKTFLRERGGAMGGGSRHAPEAPAGKSP-TFELVARKAIDPTDEEVAGNPRSRSSK 302

Query: 311 LRAGMRTVERSIEDDSFVHLPRLPTL 336
           LR  +RT   +  + S ++  R+P+L
Sbjct: 303 LRWAIRTDAPTWGEKSGLN-SRIPSL 327


>gi|297717878|gb|ADI50082.1| S-adenosyl-methyltransferase MraW [Candidatus Odyssella
           thessalonicensis L13]
          Length = 314

 Score =  244 bits (624), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 134/303 (44%), Positives = 192/303 (63%), Gaps = 7/303 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78
           H+PVLL+++   L    G + +DATFG GGY+R+  +  +  VIA+DRDP A+   ++  
Sbjct: 2   HIPVLLKEMQEALAIRDGALYIDATFGGGGYTRAILEQANCQVIAVDRDPEAIQRAEQLK 61

Query: 79  RDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
             Y ++  +FQ  FS L    + VP + VDGVVFD GVSS QID  +RGFSF+  GPLDM
Sbjct: 62  AQYPDRLFVFQGVFSDLPSIVEKVPVEKVDGVVFDFGVSSYQIDTPERGFSFRFEGPLDM 121

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RMS  G SA+D+VN  + +DL  ++   GEE ++ RIA AIV+ R+  P QTT +L++LI
Sbjct: 122 RMSGEGESAADIVNTYSEEDLANVIYTYGEEYRSRRIARAIVELRKVKPIQTTLELANLI 181

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           +  V   + +  HPAT +FQALRI VNNE+ E+ +GL+ AE  L   G L+ V+FHSLED
Sbjct: 182 KSRV-GGRPDAQHPATLTFQALRIKVNNELIEIERGLKFAEDFLSTDGRLVAVTFHSLED 240

Query: 256 RLVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           R+VK F   +S +      ++P      P  F  +  K + P++ +++ N RSRSA+LRA
Sbjct: 241 RVVKSFLRQKSVRKQKQSRLLPGEKVPSPPSFHDLYPKGIAPSETEISANPRSRSARLRA 300

Query: 314 GMR 316
            +R
Sbjct: 301 AVR 303


>gi|114570636|ref|YP_757316.1| S-adenosyl-methyltransferase MraW [Maricaulis maris MCS10]
 gi|123127593|sp|Q0AMV9|RSMH_MARMM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|114341098|gb|ABI66378.1| S-adenosyl-methyltransferase MraW [Maricaulis maris MCS10]
          Length = 334

 Score =  244 bits (623), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 135/330 (40%), Positives = 199/330 (60%), Gaps = 16/330 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF-----CKMGSNVIALDRDPFA 70
           ++  H+PV++ +V+  L P  G + +D TFGAGGYSR       CK+    I +DRDP  
Sbjct: 2   SVAPHIPVMMSEVLHALEPRSGALYIDGTFGAGGYSRGILSAADCKL----IGIDRDPAV 57

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSF 127
                + ++    +F+  +A FS + + +  +G   VDG+V D+GVSSMQID  +RGFSF
Sbjct: 58  QPTATQLVQASGGRFAFAEAPFSAMGEVLASRGIDQVDGIVLDIGVSSMQIDQAERGFSF 117

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
            + GPLDMRM+ SG +A+D VN+    +L  I  + GEE+++ RIA  I   R  A  +T
Sbjct: 118 MRKGPLDMRMAASGPTAADAVNRLKEAELADIFYVYGEERRSRRIAKFICTARAEAKIET 177

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T  L+ ++ +     K+++IHPAT+ FQALRIFVN+E+ ELA+ L ++E+ L   G L+V
Sbjct: 178 TDRLAEIVTRATG-GKHSKIHPATKVFQALRIFVNDELGELARALEASERLLAPLGRLVV 236

Query: 248 VSFHSLEDRLVKKFFASRSGKV--MAVRHMIPSNAHPA-VFQSITKKVVVPTQEDVAFNR 304
           V+FHSLEDR+VK F  SR+G       R+     A PA  F  +T++ V  + E+ A N 
Sbjct: 237 VTFHSLEDRMVKTFLRSRAGLAGGGGSRYEPAVEAGPAPSFSLLTRRAVSASDEEAAENP 296

Query: 305 RSRSAKLRAGMRTVERSIEDDSFVHLPRLP 334
           R+RSAKLRA +R    +  D   +H   +P
Sbjct: 297 RARSAKLRAAIRNEAPAWSDSPSLHTSIVP 326


>gi|241762288|ref|ZP_04760369.1| S-adenosyl-methyltransferase MraW [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
 gi|241373191|gb|EER62821.1| S-adenosyl-methyltransferase MraW [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
          Length = 332

 Score =  243 bits (620), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 142/320 (44%), Positives = 196/320 (61%), Gaps = 10/320 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSNVIALDRDPFAVSCGQETM 78
           H+PVLL++VI  L+P  G + +D TFGAGGYSR+   K  + VIA DRDP A+  G   +
Sbjct: 10  HIPVLLDEVIEALSPVEGGIYIDGTFGAGGYSRAILEKADTQVIAFDRDPDAIREGASLV 69

Query: 79  RDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
             YK +  L    FS +    D +  K VDG+VFD+GVSSMQID  +RGFS Q  GPLDM
Sbjct: 70  EKYKGRLRLVNDCFSNIGHHLDALDIKAVDGMVFDIGVSSMQIDRPERGFSIQADGPLDM 129

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RM+ +G+SA + +N A  KD+  +L + GEE+Q+ R+A AIV  R   P  TT  L+ +I
Sbjct: 130 RMAQTGLSAEEFLNNAQEKDIADVLYLYGEERQSRRVARAIVAAR---PLTTTFQLAKVI 186

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           ++++ +   ++  PA   FQA+RI +N E++EL  GL++AE+ LK+ G L VV+FHSLED
Sbjct: 187 RQSLGYRPFDKKDPAAHCFQAIRIHLNRELDELKDGLQTAERFLKSKGCLAVVTFHSLED 246

Query: 256 RLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           R+VK F    +G+   V RH         VF S   + V   + ++A N R+RSA LRA 
Sbjct: 247 RIVKHFMREHAGQTGQVSRHQPVIPQQNPVFFSKPARPVRAGEAELARNPRARSATLRAV 306

Query: 315 MRTVERSIEDDSF--VHLPR 332
            RT     ED S    H+PR
Sbjct: 307 YRTETPFSEDISRPDTHIPR 326


>gi|260752706|ref|YP_003225599.1| S-adenosyl-methyltransferase MraW [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
 gi|258552069|gb|ACV75015.1| S-adenosyl-methyltransferase MraW [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
          Length = 332

 Score =  243 bits (620), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 142/320 (44%), Positives = 195/320 (60%), Gaps = 10/320 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSNVIALDRDPFAVSCGQETM 78
           H+PVLL++VI  L+P  G + +D TFGAGGYSR+   K  + VIA DRDP A+  G   +
Sbjct: 10  HIPVLLDEVIEALSPVEGGIYIDGTFGAGGYSRAILEKADTQVIAFDRDPDAIREGAALV 69

Query: 79  RDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
             YK +  L    FS +    D +  K VDG+VFD+GVSSMQID  +RGFS Q  GPLDM
Sbjct: 70  EKYKGRLRLVNDCFSNIDHHLDALDIKAVDGMVFDIGVSSMQIDRPERGFSIQADGPLDM 129

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RM+ +G+SA + +N A  KD+  +L + GEE+Q+ R+A AIV  R   P  TT  L+ +I
Sbjct: 130 RMAQAGLSAEEFLNNAQEKDIADVLYLYGEERQSRRVARAIVAAR---PLTTTFQLAKVI 186

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           ++++ +   ++  PA   FQA+RI +N E++EL  GL++AE+ LK  G L VV+FHSLED
Sbjct: 187 RQSLGYRPFDKKDPAAHCFQAIRIHLNRELDELKDGLQTAERFLKTKGCLAVVTFHSLED 246

Query: 256 RLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           R+VK F    +G+   V RH         VF S   + V   + ++A N R+RSA LRA 
Sbjct: 247 RIVKHFMREHAGQTGQVSRHQPVIPQQNPVFFSKPARPVRAGEAELARNPRARSATLRAV 306

Query: 315 MRTVERSIEDDSF--VHLPR 332
            RT     ED S    H+PR
Sbjct: 307 YRTETPFSEDISRPDTHIPR 326


>gi|126735371|ref|ZP_01751117.1| S-adenosyl-methyltransferase MraW [Roseobacter sp. CCS2]
 gi|126715926|gb|EBA12791.1| S-adenosyl-methyltransferase MraW [Roseobacter sp. CCS2]
          Length = 297

 Score =  243 bits (619), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 131/280 (46%), Positives = 177/280 (63%), Gaps = 9/280 (3%)

Query: 41  LDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYV 99
           +D TFG GGY+R+    G++ VI +DRDP A     + + DY ++       FS+L +Y 
Sbjct: 1   MDGTFGNGGYTRALLAAGADKVIGVDRDPLAFEMAADWIGDYGDRIKTVAGVFSKLDEYG 60

Query: 100 PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRI 159
            D  +DGVV DLGVSSMQ+D  +RGFSF + GPLDMRMS  G SA+D+ N A+  +L  I
Sbjct: 61  AD--LDGVVLDLGVSSMQLDLAERGFSFMRDGPLDMRMSQDGPSAADLCNDADEAELADI 118

Query: 160 LGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRI 219
           + + GEE+ + RIA AIV  R   P  TT  L+ +++  +  SK  + HPATR+FQALRI
Sbjct: 119 IYLYGEERASRRIAKAIVDAR---PLTTTLQLAKIVEGCLPRSKPGQSHPATRTFQALRI 175

Query: 220 FVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP-- 277
            VNNE  ELA+GL +AE+ALK  G L VV+FHS+EDR+VK+F  +RSG         P  
Sbjct: 176 AVNNEYGELAEGLMAAERALKPDGQLAVVTFHSVEDRMVKRFLQARSGNTANANRYAPEI 235

Query: 278 SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
               PA ++   +K + P + ++A N RSRSAKLR   RT
Sbjct: 236 EQVTPA-WRIEKRKAIGPDEAELAENPRSRSAKLRVASRT 274


>gi|56551719|ref|YP_162558.1| S-adenosyl-methyltransferase MraW [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|59803046|sp|Q9REQ9|RSMH_ZYMMO RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|56543293|gb|AAV89447.1| S-adenosyl-methyltransferase MraW [Zymomonas mobilis subsp. mobilis
           ZM4]
          Length = 332

 Score =  242 bits (617), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 142/323 (43%), Positives = 196/323 (60%), Gaps = 10/323 (3%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSNVIALDRDPFAVSCGQ 75
           +  H+PVLL++VI  L+P  G + +D TFGAGGYSR+   K  + VIA DRDP A+  G 
Sbjct: 7   LAPHIPVLLDEVIEALSPVEGGIYIDGTFGAGGYSRAILEKADTQVIAFDRDPDAIREGA 66

Query: 76  ETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +  YK +  L    FS +    D +  K VDG+VFD+GVSSMQID  +RGFS Q  GP
Sbjct: 67  SLVEKYKGRLRLVNDCFSNIGHHLDALDIKTVDGMVFDIGVSSMQIDRPERGFSIQADGP 126

Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           LDMRM+ +G+SA + +N A  KD+  +L + GEE+Q+ R+A AIV  R   P  TT  L+
Sbjct: 127 LDMRMAQAGLSAEEFLNNAQEKDIADVLYLYGEERQSRRVARAIVAAR---PLTTTFQLA 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I++++ +   ++  PA   FQA+RI +N E++EL  GL++AE+ LK  G L VV+FHS
Sbjct: 184 KVIRQSLGYRPFDKKDPAAHCFQAIRIHLNRELDELKDGLQTAERFLKTKGCLAVVTFHS 243

Query: 253 LEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK F    +G+   V RH         VF S   + V   + ++A N R+RSA L
Sbjct: 244 LEDRIVKHFMREHAGQTGQVSRHQPVIPQQNPVFFSKPARPVRAGETELARNPRARSATL 303

Query: 312 RAGMRTVERSIEDDSF--VHLPR 332
           RA  RT     ED S    H+PR
Sbjct: 304 RAVYRTETPFSEDISRPDTHIPR 326


>gi|310814902|ref|YP_003962866.1| S-adenosyl-methyltransferase MraW [Ketogulonicigenium vulgare Y25]
 gi|308753637|gb|ADO41566.1| S-adenosyl-methyltransferase MraW [Ketogulonicigenium vulgare Y25]
          Length = 328

 Score =  241 bits (616), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 136/300 (45%), Positives = 184/300 (61%), Gaps = 7/300 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETM 78
           HV VL++ ++  + P  G V +D TFGAGGY+R     G++ VI +DRDP       +  
Sbjct: 7   HVSVLIKPLVRAVAPVQG-VWVDGTFGAGGYTRDLLAAGADKVIGIDRDPSVFPLSADWR 65

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138
               ++  L   TFS++ + V +  VDGVV DLGVSSMQID  +RGFSFQK GPLDMRM 
Sbjct: 66  AAMPDRVDLRLGTFSEMDEIVGEM-VDGVVLDLGVSSMQIDQAERGFSFQKEGPLDMRMG 124

Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198
            SG +A+D+ N    ++L  IL + GEE+ + RIA AIV+ R   P   T +L+ ++   
Sbjct: 125 DSGPTAADLCNTLPEEELANILYLFGEERASRRIARAIVQAR---PITRTLELAEIVSSC 181

Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258
           +   K  + HPATRSFQALRI VN+E  +L  GL +AE+ LK GG L VV+FHS+EDR+V
Sbjct: 182 LPRQKPGQSHPATRSFQALRIAVNDEYRQLYDGLAAAERILKPGGYLAVVTFHSVEDRMV 241

Query: 259 KKFFASRSGKVMAVRHMIPS-NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           K+F   R+G V       P   + P  F  +T+K + P  ++VA N RSRSA LR   RT
Sbjct: 242 KRFMQLRAGAVGGGSRYAPEVQSAPPAFTLVTRKAIQPDDDEVAANPRSRSALLRVAKRT 301


>gi|218508691|ref|ZP_03506569.1| S-adenosyl-methyltransferase MraW [Rhizobium etli Brasil 5]
          Length = 227

 Score =  241 bits (615), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 123/227 (54%), Positives = 157/227 (69%), Gaps = 1/227 (0%)

Query: 116 MQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175
           MQ+D  +RGFSFQK+GPLDMRMS +G+SA+DVVN+A V DL RI   LGEE QA RIAHA
Sbjct: 1   MQLDEAERGFSFQKNGPLDMRMSATGVSAADVVNRAKVADLIRIFHFLGEESQAPRIAHA 60

Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           I KRR   PF+TT+DL+ LI+        ++IHPATR FQALRIFVN+E+ ELAQ L +A
Sbjct: 61  IEKRRAEKPFETTRDLAGLIELVTPRKMKDKIHPATRVFQALRIFVNDELGELAQALFAA 120

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295
           E  LK GG L+VV+FHSLEDR+VKKFF+ R+GK    RH+  ++   A F ++ K +V  
Sbjct: 121 ETVLKPGGRLVVVTFHSLEDRIVKKFFSDRAGKASGSRHLPAAHERAATFTTVGKSMVSA 180

Query: 296 TQEDVAFNRRSRSAKLRAGMRTVERSIEDD-SFVHLPRLPTLSQFRG 341
           ++ +   N R+RSAKLRAG RT   +   D S    P L +L +  G
Sbjct: 181 SEAEAESNPRARSAKLRAGQRTAAAAEAADMSLFGFPNLASLGKLGG 227


>gi|115524112|ref|YP_781023.1| methyltransferase [Rhodopseudomonas palustris BisA53]
 gi|115518059|gb|ABJ06043.1| S-adenosyl-methyltransferase MraW [Rhodopseudomonas palustris
           BisA53]
          Length = 400

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 151/326 (46%), Positives = 198/326 (60%), Gaps = 8/326 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETM 78
           H+ VL  + +  L P  G V +DATFGAGGYSR+   + G+ VI +DRD  A++ G + +
Sbjct: 77  HISVLGREAVDWLAPRDGGVYVDATFGAGGYSRAILTIDGTRVIGIDRDRTAIAGGFDLV 136

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
                + +L ++ FSQL +    +GV    GVV D+GVSSMQ+D  +RGFSF+  GPLDM
Sbjct: 137 EQSDGRLTLVESRFSQLAEVCASQGVGQVDGVVMDVGVSSMQLDQAERGFSFRFDGPLDM 196

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RM   G SA++V+  A+  DL  I  I GEE+ +  +A AIV  R   P  TT+ L+ L+
Sbjct: 197 RMGHDGFSAAEVIAAASEADLANIFYIFGEERHSRAVARAIVAARAETPIVTTKALADLV 256

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
            K V+ SK   IHPATRSFQ LRIFVN E++EL   L +AE+ LK GG L+VVSFHSLED
Sbjct: 257 SKVVH-SKPGEIHPATRSFQGLRIFVNAELDELHLALTAAERVLKPGGRLVVVSFHSLED 315

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           R+VK FFA R       RH          F  +TK+ V P+ E+ A N R+RSAKLRAG 
Sbjct: 316 RIVKNFFAERGKASSGSRHRPEMAQQQPSFAILTKRPVTPSDEETAANPRARSAKLRAGE 375

Query: 316 RTVERSIEDDSFVHLPRLPTLSQFRG 341
           RT   +  +     LP  PTL+   G
Sbjct: 376 RTAAPAQPE---APLPHWPTLASVMG 398


>gi|157826956|ref|YP_001496020.1| S-adenosyl-methyltransferase MraW [Rickettsia bellii OSU 85-389]
 gi|167011836|sp|A8GVV6|RSMH_RICB8 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|157802260|gb|ABV78983.1| S-adenosyl-methyltransferase MraW [Rickettsia bellii OSU 85-389]
          Length = 305

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 129/302 (42%), Positives = 185/302 (61%), Gaps = 7/302 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQETM 78
           H+PV+L +++  L P  G+  LD TFGAGGYS++  +     V ALDRDP  +   +E  
Sbjct: 5   HIPVMLNEMLKFLAPKAGESYLDCTFGAGGYSKALLENCDCYVTALDRDPNVIKKAEEIK 64

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138
            +YK++F   +  F      +  K  DG+V DLGVSSMQ+D  DRGFSF   GPLDMRMS
Sbjct: 65  HNYKDRFDFVETNFGNCFAKLESKKFDGIVLDLGVSSMQLDIPDRGFSFLHDGPLDMRMS 124

Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198
             G+SA + +N A  KDL  ++   G+E  + RIA  IV+ R++A   +T  L+ ++   
Sbjct: 125 GQGLSAEEFINTAEEKDLADVIYKYGDETFSRRIAKKIVEVRKAARIDSTGKLADIVHSC 184

Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258
           + F K  +I PAT++FQA+RI++NNE+ EL Q L + +  LK  G L+VVSFHSLEDR+V
Sbjct: 185 IGFRK-GKIDPATKTFQAIRIYINNELGELEQFLANVKNILKKDGRLVVVSFHSLEDRIV 243

Query: 259 KKFFASRSGKVMA----VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           K FF   S K +A     +  I  N    + + IT K  +P+ ++++ N R+RSAKLRA 
Sbjct: 244 KNFFKENSEKPVARSKYAKEDIMLNPDKWL-KIITNKAEIPSDKEISLNVRARSAKLRAA 302

Query: 315 MR 316
            +
Sbjct: 303 KK 304


>gi|91205355|ref|YP_537710.1| S-adenosyl-methyltransferase MraW [Rickettsia bellii RML369-C]
 gi|122425755|sp|Q1RJ43|RSMH_RICBR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|91068899|gb|ABE04621.1| S-adenosyl-methyltransferase MraW [Rickettsia bellii RML369-C]
          Length = 305

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 129/302 (42%), Positives = 186/302 (61%), Gaps = 7/302 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQETM 78
           H+PV+L +++  L P  G+  LD TFGAGGYS++  +     V ALDRDP  +   +E  
Sbjct: 5   HIPVMLNEMLKFLAPKAGESYLDCTFGAGGYSKALLENCDCYVTALDRDPNVIKKAEEIK 64

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138
            +YK++F   +  F      +  K  DG+V DLGVSSMQ+D  DRGFSF   GPLDMRMS
Sbjct: 65  HNYKDRFDFVETNFGNCFAKLESKKFDGIVLDLGVSSMQLDIPDRGFSFLHDGPLDMRMS 124

Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198
             G+SA + +N A  KDL  ++   G+E  + RIA  IV+ R++A   +T  L+ +++  
Sbjct: 125 GQGLSAEEFINTAEEKDLADVIYKYGDETFSRRIAKKIVEVRKAARIDSTGKLADIVRSC 184

Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258
           + F K  +I PAT++FQA+RI++NNE+ EL Q L + +  LK  G L+VVSFHSLEDR+V
Sbjct: 185 IGFRK-GKIDPATKTFQAIRIYINNELGELEQFLANVKNILKKDGRLVVVSFHSLEDRIV 243

Query: 259 KKFFASRSGKVMA----VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           K FF   S K +A     +  I  N    + + IT K  +P+ ++++ N R+RSAKLRA 
Sbjct: 244 KNFFKENSEKPVARSKYAKEDIMLNPDKWL-KIITNKAEIPSDKEISLNVRARSAKLRAA 302

Query: 315 MR 316
            +
Sbjct: 303 KK 304


>gi|262831542|sp|Q07PU1|RSMH_RHOP5 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 332

 Score =  240 bits (613), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 151/326 (46%), Positives = 198/326 (60%), Gaps = 8/326 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETM 78
           H+ VL  + +  L P  G V +DATFGAGGYSR+   + G+ VI +DRD  A++ G + +
Sbjct: 9   HISVLGREAVDWLAPRDGGVYVDATFGAGGYSRAILTIDGTRVIGIDRDRTAIAGGFDLV 68

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
                + +L ++ FSQL +    +GV    GVV D+GVSSMQ+D  +RGFSF+  GPLDM
Sbjct: 69  EQSDGRLTLVESRFSQLAEVCASQGVGQVDGVVMDVGVSSMQLDQAERGFSFRFDGPLDM 128

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RM   G SA++V+  A+  DL  I  I GEE+ +  +A AIV  R   P  TT+ L+ L+
Sbjct: 129 RMGHDGFSAAEVIAAASEADLANIFYIFGEERHSRAVARAIVAARAETPIVTTKALADLV 188

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
            K V+ SK   IHPATRSFQ LRIFVN E++EL   L +AE+ LK GG L+VVSFHSLED
Sbjct: 189 SKVVH-SKPGEIHPATRSFQGLRIFVNAELDELHLALTAAERVLKPGGRLVVVSFHSLED 247

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           R+VK FFA R       RH          F  +TK+ V P+ E+ A N R+RSAKLRAG 
Sbjct: 248 RIVKNFFAERGKASSGSRHRPEMAQQQPSFAILTKRPVTPSDEETAANPRARSAKLRAGE 307

Query: 316 RTVERSIEDDSFVHLPRLPTLSQFRG 341
           RT   +  +     LP  PTL+   G
Sbjct: 308 RTAAPAQPE---APLPHWPTLASVMG 330


>gi|209963954|ref|YP_002296869.1| S-adenosyl-methyltransferase MraW [Rhodospirillum centenum SW]
 gi|262825439|sp|B6IRH0|RSMH_RHOCS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|209957420|gb|ACI98056.1| S-adenosyl-methyltransferase MraW [Rhodospirillum centenum SW]
          Length = 329

 Score =  239 bits (611), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 134/304 (44%), Positives = 190/304 (62%), Gaps = 7/304 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF-CKMGSNVIALDRDPFAVSCGQETM 78
           H+PVL ++V+  L P  G V++D TFGAGGY+ +        V A+DRDP AV+ G    
Sbjct: 16  HIPVLRDEVVDALAPRDGAVLVDGTFGAGGYTAALLASAACTVWAIDRDPAAVARGHALA 75

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
             +  + ++   TF  ++  +   G   VDG+  D+GVSS QID   RGFSF+  GPLDM
Sbjct: 76  ARHPGRLTVLDGTFGCMESLLAAHGITRVDGIALDIGVSSPQIDDPSRGFSFRFDGPLDM 135

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RM   G +A+D+VN+ +  ++  I+   GEE+ + R+A AIV RR+ AP   T DL+ ++
Sbjct: 136 RMGSHGTTAADIVNERDEAEIADIVWRYGEERHSRRVARAIVARRREAPITRTLDLAEIV 195

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           +  V  SK+  I PATR+FQALRI VN+E+ EL +GL +AE+ L  GG L VV+FHSLED
Sbjct: 196 RSVVPKSKDG-IDPATRTFQALRIAVNDELGELERGLAAAERLLAPGGRLAVVTFHSLED 254

Query: 256 RLVKKFFASRSGKVMA-VRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           R+VK+F  SRS    A  RH+  P++A    F+ I +  V P   ++A N R+RSA+LR+
Sbjct: 255 RVVKEFLRSRSAAAPAPSRHLPAPADAPAPTFRLIARSGVTPAPAELAANPRARSARLRS 314

Query: 314 GMRT 317
             RT
Sbjct: 315 AERT 318


>gi|195997843|ref|XP_002108790.1| hypothetical protein TRIADDRAFT_19892 [Trichoplax adhaerens]
 gi|190589566|gb|EDV29588.1| hypothetical protein TRIADDRAFT_19892 [Trichoplax adhaerens]
          Length = 378

 Score =  239 bits (610), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 136/344 (39%), Positives = 202/344 (58%), Gaps = 42/344 (12%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAV 71
           H ++  H PVLL+ V+ LL PA G+  +DATFG GG++ +  K  ++  + A+D DP A+
Sbjct: 25  HCSVLKHQPVLLDTVVKLLAPANGQSYIDATFGGGGHTSAILKAATDCQIYAIDTDPLAI 84

Query: 72  SCGQE---TMRDYKEQFSLFQATFSQL------QDYVPDKGVDGVVFDLGVSSMQIDCGD 122
           +  ++   T  ++ ++  + Q  F Q+      Q+ +P   +DG++FDLG+SSMQID   
Sbjct: 85  ARAKQLASTTSNWIQRLKVVQCRFGQMENKLLAQEKLPPNSMDGIIFDLGMSSMQIDDPL 144

Query: 123 RGFSFQKSGPLDMRMSCSG---------ISASDVVNQANVKDLTRILGILGEEKQASRIA 173
           RGFSFQ SGPLDMRM  +          I+A+ V+N  + +DL  +L   GEE++A  IA
Sbjct: 145 RGFSFQSSGPLDMRMDATSDEIGKHQHRITAAHVINNIDKEDLADVLWNYGEERKARAIA 204

Query: 174 HAIVKRRQSAPFQTTQDLSSLIQKT--VYFSKNNRIHPATRSFQALRIFVNNEIEELAQG 231
            AI+K R+  P  TT  L  +I +     + K+ +IHPATR+FQA+RI +N+E+ +L QG
Sbjct: 205 TAIIKARKKQPITTTDHLVDIIDRQFPYKYRKDGQIHPATRTFQAIRILINDELWQLVQG 264

Query: 232 LRSAEKALKAGGLLIVVSFHSLEDRLVKKF--------FASRSGKVMAVRHMIPSNAHPA 283
           L + +  LK GG LIV+SFHSLEDR+VKKF        F SRS    + ++   S    +
Sbjct: 265 LNACKALLKNGGRLIVISFHSLEDRIVKKFFNGEDRPDFTSRSSPTSSKQYARLSEEGKS 324

Query: 284 VFQS------------ITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
             +S            I KK + P+ E++A N R+RSAKLR  +
Sbjct: 325 KIESKSIIKRNSPWKLICKKPIYPSPEEIAHNSRARSAKLRCAI 368


>gi|15604423|ref|NP_220941.1| S-adenosyl-methyltransferase MraW [Rickettsia prowazekii str.
           Madrid E]
 gi|8134811|sp|Q9ZCY2|RSMH_RICPR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|3861117|emb|CAA15017.1| unknown [Rickettsia prowazekii]
          Length = 306

 Score =  239 bits (609), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 128/308 (41%), Positives = 194/308 (62%), Gaps = 15/308 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-----FCKMGSNVIALDRDPFAVSCG 74
           H+PV+L +V+A+L P   +  LD TFGAGGYS +     +C    +V +LDRDP  +   
Sbjct: 5   HIPVMLSEVLAVLAPKGYESYLDCTFGAGGYSNAILNSCYC----SVTSLDRDPNVIESV 60

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++  +DY E+F+  +  F+     +  K  DG+V DLGVSSMQ+D  DRGFSF   GPLD
Sbjct: 61  EKIKQDYGERFNFIKTNFADSFRKLKHKKFDGIVMDLGVSSMQLDIADRGFSFLYDGPLD 120

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRMS  G SA + VN A+ +++  ++   G E  + RIA +IV+ R++A   +T+ L+ +
Sbjct: 121 MRMSVQGFSAEEFVNTADEEEIADVIYKYGNESLSRRIAKSIVEYRKTARIDSTRKLAEI 180

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           ++ ++ F K  +I  AT++FQA+RI++NNE+EEL Q L + +  LK  G L+VVSFHSLE
Sbjct: 181 VRYSIGFRK-GKIDSATKTFQAIRIYINNELEELEQFLANVKNILKKDGRLVVVSFHSLE 239

Query: 255 DRLVKKFFASRSGKVMA----VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           DR+VK FF   S K +A     +  I  + +  + + IT KV+ P+ +++  N R+RSAK
Sbjct: 240 DRIVKNFFKENSEKQVARSKYAKDEIKIDPNKWL-KIITPKVLTPSSQEIRLNVRARSAK 298

Query: 311 LRAGMRTV 318
           LRA  + +
Sbjct: 299 LRAAKKII 306


>gi|238650666|ref|YP_002916519.1| S-adenosyl-methyltransferase MraW [Rickettsia peacockii str.
           Rustic]
 gi|259495904|sp|C4K1M0|RSMH_RICPU RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|238624764|gb|ACR47470.1| S-adenosyl-methyltransferase MraW [Rickettsia peacockii str.
           Rustic]
          Length = 307

 Score =  237 bits (605), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 132/308 (42%), Positives = 187/308 (60%), Gaps = 7/308 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQ 75
           I  HV V+L K++  L+P  G+  LD TFGAGGYS++  +     V ALDRDP  +   +
Sbjct: 2   IQSHVSVMLNKMLEALSPKAGESYLDCTFGAGGYSKAILESCNCYVTALDRDPNVIKRAE 61

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           E  ++Y E+F   +  F+     + +K  DG+V DLGVSSMQ+D  DRGFSF   GPLDM
Sbjct: 62  EIQQNYGERFDFVETNFAGSFAKLKEKKFDGIVLDLGVSSMQLDIADRGFSFLHDGPLDM 121

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RMS  G+SA + VN A  K+L  ++   G+E  + RIA  IV+ R++A   +T  L+ ++
Sbjct: 122 RMSGQGLSAEEFVNAAEAKELADVIYKYGDESFSRRIAKRIVEYRKTARIDSTGKLAEIV 181

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           + ++ F K  +I PAT++FQA+RI+VN+E+ EL Q L + +  LK  G L+VVSFHSLED
Sbjct: 182 RSSIGFRK-GKIDPATKTFQAIRIYVNDELGELEQFLVNVKNILKKDGRLVVVSFHSLED 240

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHP----AVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           R+VK FF   S K + VR     +          + IT K + P+ ++V  N R+RSAKL
Sbjct: 241 RIVKNFFKENSEKPV-VRSKYAKDDMTIDPNKWLKIITNKALAPSDKEVGLNIRARSAKL 299

Query: 312 RAGMRTVE 319
           RA     E
Sbjct: 300 RAAKAIYE 307


>gi|218296762|ref|ZP_03497468.1| S-adenosyl-methyltransferase MraW [Thermus aquaticus Y51MC23]
 gi|218242851|gb|EED09385.1| S-adenosyl-methyltransferase MraW [Thermus aquaticus Y51MC23]
          Length = 286

 Score =  237 bits (605), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 128/299 (42%), Positives = 185/299 (61%), Gaps = 26/299 (8%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETM 78
           +H+PVL ++ + LL   PG+V +DAT G  G++R   + G  VIALD+DP AV   +   
Sbjct: 6   EHIPVLYQEALDLLRVQPGQVYVDATLGGAGHTRGILERGGRVIALDQDPEAVERAKALS 65

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
                    ++A F  L++ + + GV+   G++ DLGVSS  ++   RGFS+Q+ GPLDM
Sbjct: 66  HP---NLLAYRANFRHLKEVLKEAGVEEVAGILADLGVSSFHLEDPRRGFSYQQEGPLDM 122

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RM   G +A +VVN   ++DL RIL  LGEE+QA RIA AIV+ R+ A  +TT +L+ ++
Sbjct: 123 RMGLEGPTAEEVVNTLPLEDLYRILRDLGEERQAYRIAKAIVEARRKARIRTTTELAEIV 182

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           ++ V F      HPA ++FQALRI+VN+E+  L + LR AE+ L  GG L+V++FHSLED
Sbjct: 183 RRAVGFRAAG--HPARKTFQALRIYVNDELNALEEFLRQAEEVLAPGGRLVVIAFHSLED 240

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           R+VK+F      KV+                  TKK + P+QE++A N R+RSAKLRA 
Sbjct: 241 RIVKRFLRESRLKVL------------------TKKPLTPSQEEMAKNPRARSAKLRAA 281


>gi|159045015|ref|YP_001533809.1| S-adenosyl-methyltransferase MraW [Dinoroseobacter shibae DFL 12]
 gi|263446387|sp|A8LSB5|RSMH_DINSH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|157912775|gb|ABV94208.1| S-adenosyl-L-methionine-dependent methyltransferase
           [Dinoroseobacter shibae DFL 12]
          Length = 333

 Score =  237 bits (604), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 144/322 (44%), Positives = 197/322 (61%), Gaps = 5/322 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETM 78
           H+PVLLE ++    P  G   LD TFGAGGY+R   + G++ VI +D+DP A+    +  
Sbjct: 12  HIPVLLEPILTRCAPITG-TWLDGTFGAGGYARGLLEAGADRVIGVDQDPLALEMAADWA 70

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138
            DY ++  L    F  L  +     +DGVV DLGVSSMQ+D  +RGFSF + GPLDMRM+
Sbjct: 71  GDYGDRLRLVAGNFEALDAHA-GGPLDGVVLDLGVSSMQLDRAERGFSFLRDGPLDMRMA 129

Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198
             G SA+D+V + +   L  IL  LGEE+ A RIA AIV  R  AP   T  L+ ++   
Sbjct: 130 QHGRSAADLVAEEDADMLADILFHLGEERAARRIARAIVAARAVAPITRTSQLAEIVASC 189

Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258
           +   K  + H ATRSFQALRI VN+E+  L +GL +AE AL+ GG L VV+FHS+EDR+V
Sbjct: 190 LPRPKPGQSHAATRSFQALRIAVNDELGALVRGLEAAEGALEPGGWLAVVTFHSIEDRIV 249

Query: 259 KKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           K+FF   SG    A R+   +   PA F+   +K + PT+ +VA N R+RSA+LR G RT
Sbjct: 250 KRFFTQASGGAGRANRYAPETEDTPARFRLEPRKAIAPTEAEVAANPRARSARLRIGRRT 309

Query: 318 VERSIEDD-SFVHLPRLPTLSQ 338
              ++  D + + LP L TL++
Sbjct: 310 AAPAMPADRAALGLPHLYTLTE 331


>gi|329115569|ref|ZP_08244291.1| Ribosomal RNA small subunit methyltransferase H [Acetobacter
           pomorum DM001]
 gi|326694997|gb|EGE46716.1| Ribosomal RNA small subunit methyltransferase H [Acetobacter
           pomorum DM001]
          Length = 335

 Score =  237 bits (604), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 134/315 (42%), Positives = 185/315 (58%), Gaps = 14/315 (4%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSC 73
            T   H+PV+L +V+  L PA G  ILD TFG GGYS +  K    NV  +DRDP A++ 
Sbjct: 11  ETAQGHIPVMLPEVLEYLYPADGGRILDCTFGGGGYSSAILKSADCNVWGIDRDPDAIAR 70

Query: 74  GQETMRDYK-----EQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGF 125
           GQ   R +       +  + Q +F  +Q      G+   DG+V DLGVSS Q+D  DRGF
Sbjct: 71  GQALSRHFPAANGTSRLHMLQGSFGNMQALASAAGISTFDGIVLDLGVSSFQLDEADRGF 130

Query: 126 SFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           SF+  GPLDMRM  SG SA+D+VN+A   +L  I    GEE+ A R+A A+V  R   PF
Sbjct: 131 SFRMEGPLDMRMEKSGPSAADIVNKAPEAELADIFHFYGEERHARRLARAVVNARSEMPF 190

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           +TT  L++L++  +   ++  I  ATR+FQ LRI VN+E+ E+ +GL  A   L  GG L
Sbjct: 191 ETTTQLANLVRSVIPKDRSG-IDSATRAFQGLRIAVNDELGEIERGLEQALDMLAPGGRL 249

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP----SNAHPAVFQSITKKVVVPTQEDVA 301
           +VVSFHSLEDR+ K+     +GK  +     P    + A  A F ++T K   PT  + +
Sbjct: 250 VVVSFHSLEDRIAKRMVQHATGKDKSFSRYDPRAAGTPAPEADFVALTHKARRPTDTECS 309

Query: 302 FNRRSRSAKLRAGMR 316
           +N R+RSA+LRA M+
Sbjct: 310 YNPRARSARLRAVMK 324


>gi|68171490|ref|ZP_00544874.1| methyltransferase [Ehrlichia chaffeensis str. Sapulpa]
 gi|67999096|gb|EAM85763.1| methyltransferase [Ehrlichia chaffeensis str. Sapulpa]
          Length = 297

 Score =  237 bits (604), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 136/304 (44%), Positives = 192/304 (63%), Gaps = 16/304 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78
           H PVLL +++ +LNP  GKV +DATFGAGGY+R+  K  +  V A+D+D       ++ +
Sbjct: 2   HTPVLLNEMLDILNPQDGKVYVDATFGAGGYTRAILKSANCQVYAIDQDECTNVFYEKLV 61

Query: 79  RDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
            D+  +     + FS+++  +     K VDG+VFD+GVSSMQ++   RGFSF K GPLDM
Sbjct: 62  NDFPGKVHFCVSKFSKIKQILHGAQLKKVDGIVFDIGVSSMQLEDASRGFSFSKDGPLDM 121

Query: 136 RMSCS--GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           RMS S   + AS  VN A  +++  ++   G EK + +IA AI + R+  P +TT +L+S
Sbjct: 122 RMSTSTSNVDASVFVNTAFEEEIANVIYQYGGEKYSRKIAKAIAESRKKKPIKTTGELAS 181

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           +++  +  SKN+ I PATR+FQA+RI+VN E+EEL QG+  +   L  GG +IVVSFHSL
Sbjct: 182 IVRSVISRSKNHSIDPATRTFQAIRIWVNKELEELEQGIIDSADLLNPGGKIIVVSFHSL 241

Query: 254 EDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           EDR+VK  F S  SG          S   P  FQ I KKV+ P+ E++  N RSRSAKLR
Sbjct: 242 EDRIVKVMFKSLCSGS---------SVISPIGFQLINKKVIRPSFEEILNNPRSRSAKLR 292

Query: 313 AGMR 316
           A ++
Sbjct: 293 AILK 296


>gi|73667110|ref|YP_303126.1| S-adenosyl-methyltransferase MraW [Ehrlichia canis str. Jake]
 gi|88909200|sp|Q3YRX7|RSMH_EHRCJ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|72394251|gb|AAZ68528.1| methyl transferase [Ehrlichia canis str. Jake]
          Length = 297

 Score =  237 bits (604), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 132/302 (43%), Positives = 193/302 (63%), Gaps = 12/302 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78
           H PVLL++++ +L+P  GK+ +DATFGAGGY+++     +  V A+D+D       +E  
Sbjct: 2   HTPVLLKEMLEILDPQDGKIYVDATFGAGGYTKAILNAANCKVCAIDQDKHTSIFYEELA 61

Query: 79  RDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
            ++  +   F   FSQ++  +     + VDGVVFD+GVSSMQ+D  +RGFSF K+GPLDM
Sbjct: 62  NNFPNRIHFFINKFSQIKQVLLGAQLERVDGVVFDIGVSSMQLDDANRGFSFSKNGPLDM 121

Query: 136 RMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RMS S  I AS  VN  + +++  I+   G EK + +IA AI+  R+    +TT +L+S+
Sbjct: 122 RMSTSNSIDASVFVNTVSEEEIANIIYQYGGEKYSRKIAKAIINFRKKKVIETTGELASI 181

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           ++  V  SKN+ I+PATR+FQA+RI+VN E++EL QG+  A   L  GG +IVVSFHSLE
Sbjct: 182 VRSVVSRSKNHDINPATRTFQAIRIWVNKELQELEQGIMCAADLLNPGGKIIVVSFHSLE 241

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           DR+VK  F S     ++++           FQ I KK+V P+ E++  N RSRSAKLRA 
Sbjct: 242 DRIVKMIFKSLCSDEISLK-------LNTGFQLINKKIVRPSFEEILNNPRSRSAKLRAI 294

Query: 315 MR 316
           ++
Sbjct: 295 LK 296


>gi|88657585|ref|YP_507355.1| S-adenosyl-methyltransferase MraW [Ehrlichia chaffeensis str.
           Arkansas]
 gi|123493393|sp|Q2GGS8|RSMH_EHRCR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|88599042|gb|ABD44511.1| S-adenosyl-methyltransferase MraW [Ehrlichia chaffeensis str.
           Arkansas]
          Length = 297

 Score =  237 bits (604), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 136/304 (44%), Positives = 192/304 (63%), Gaps = 16/304 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78
           H PVLL +++ +LNP  GKV +DATFGAGGY+R+  K  +  V A+D+D       ++ +
Sbjct: 2   HTPVLLNEMLDILNPQDGKVYVDATFGAGGYTRAILKSANCQVYAIDQDECTNVFYEKLV 61

Query: 79  RDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
            D+  +     + FS+++  +     K VDG+VFD+GVSSMQ++   RGFSF K GPLDM
Sbjct: 62  NDFPGKVHFCVSKFSKIKQILHGAQLKKVDGIVFDIGVSSMQLEDASRGFSFSKDGPLDM 121

Query: 136 RMSCS--GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           RMS S   + AS  VN A  +++  ++   G EK + +IA AI + R+  P +TT +L+S
Sbjct: 122 RMSTSISNVDASVFVNTAFEEEIANVIYQYGGEKYSRKIAKAIAESRKKKPIKTTGELAS 181

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           +++  +  SKN+ I PATR+FQA+RI+VN E+EEL QG+  +   L  GG +IVVSFHSL
Sbjct: 182 IVRSVISRSKNHSIDPATRTFQAIRIWVNKELEELEQGIIDSADLLNPGGKIIVVSFHSL 241

Query: 254 EDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           EDR+VK  F S  SG          S   P  FQ I KKV+ P+ E++  N RSRSAKLR
Sbjct: 242 EDRIVKVMFKSLCSGS---------SVISPIGFQLINKKVIRPSFEEILNNPRSRSAKLR 292

Query: 313 AGMR 316
           A ++
Sbjct: 293 AILK 296


>gi|126726611|ref|ZP_01742451.1| S-adenosyl-methyltransferase MraW [Rhodobacterales bacterium
           HTCC2150]
 gi|126703940|gb|EBA03033.1| S-adenosyl-methyltransferase MraW [Rhodobacterales bacterium
           HTCC2150]
          Length = 317

 Score =  236 bits (603), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 138/305 (45%), Positives = 182/305 (59%), Gaps = 10/305 (3%)

Query: 17  IGD--HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSC 73
           +GD  HVPVLL  +IA   P  G   LD TFGAGGY+R+    G++ VIA+D+DP     
Sbjct: 1   MGDAPHVPVLLRPIIAKTAPISG-TWLDGTFGAGGYTRALLDAGADTVIAVDQDPLVFDM 59

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +    +Y  +     + F+ L      + +DG+V DLGVSSMQID  +RGFSF + GPL
Sbjct: 60  AKSWADEYGARLVPVASNFADLDKA--GQNLDGIVLDLGVSSMQIDQAERGFSFMQDGPL 117

Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           DMRMS SG +A+D+VN A   +L  IL   GEE+ + RIA AI+  R   P  TT +L +
Sbjct: 118 DMRMSQSGPTAADLVNTATEAELADILFQYGEERASRRIAKAIIAAR---PLNTTAELVA 174

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
            I + V   K  + HPATRSFQALRI VN+E+  L +GL +AE+AL   G L VV+FHSL
Sbjct: 175 AITE-VAPVKKGQSHPATRSFQALRIAVNDELGALIRGLEAAERALAPNGWLAVVTFHSL 233

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           EDR+VK+F  SRS      R+     +    F+   +K +    E+VA N R+RSA LR 
Sbjct: 234 EDRIVKRFLQSRSAISQGSRYAPEQKSAAPTFELQGRKAIKADDEEVAANPRARSASLRL 293

Query: 314 GMRTV 318
             RT 
Sbjct: 294 AKRTT 298


>gi|229586901|ref|YP_002845402.1| S-adenosyl-methyltransferase MraW [Rickettsia africae ESF-5]
 gi|259495903|sp|C3PNZ9|RSMH_RICAE RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|228021951|gb|ACP53659.1| S-adenosyl-methyltransferase MraW [Rickettsia africae ESF-5]
          Length = 307

 Score =  236 bits (603), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 131/308 (42%), Positives = 187/308 (60%), Gaps = 7/308 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQ 75
           I  HV V+L +++  L+P  G+  LD TFGAGGYS++  +     V ALDRDP  +   +
Sbjct: 2   IQSHVSVMLNEMLEALSPKAGESYLDCTFGAGGYSKAILESCNCYVTALDRDPNVIKRAE 61

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           E  + Y E+F   +  F+     + +K  DG+V DLGVSSMQ+D  DRGFSF  +GPLDM
Sbjct: 62  EIQQSYGERFDFVETNFADSFAKLKEKKFDGIVLDLGVSSMQLDIADRGFSFLHNGPLDM 121

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RMS  G+SA + VN A  K+L  ++   G+E  + RIA  IV+ R++A   +T  L+ ++
Sbjct: 122 RMSGQGLSAEEFVNAAEEKELADVIYKYGDESFSRRIAKRIVEYRKTARIDSTSKLAEIV 181

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           + ++ F K  +I PAT++FQA+RI+VN+E+ EL Q L + +  LK  G L+VVSFHSLED
Sbjct: 182 RSSIGFRK-GKIDPATKTFQAIRIYVNDELGELEQFLVNVKNILKKDGRLVVVSFHSLED 240

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHP----AVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           R+VK FF   S K + VR     +          + IT K + P+ ++V  N R+RSAKL
Sbjct: 241 RIVKNFFKENSEKPV-VRSKYAKDDMTIDPNKWLKIITNKALAPSDKEVGLNIRARSAKL 299

Query: 312 RAGMRTVE 319
           RA     E
Sbjct: 300 RAAKAIYE 307


>gi|34581504|ref|ZP_00142984.1| hypothetical protein [Rickettsia sibirica 246]
 gi|28262889|gb|EAA26393.1| unknown [Rickettsia sibirica 246]
          Length = 307

 Score =  236 bits (602), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 129/307 (42%), Positives = 185/307 (60%), Gaps = 5/307 (1%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQ 75
           I  HV V+L +++  L+P  G+  LD TFGAGGYS++  +     V ALDRDP  +   +
Sbjct: 2   IQSHVSVMLNEMLEALSPKAGESYLDCTFGAGGYSKAILESCNCYVTALDRDPNVIKRAE 61

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           E  ++Y E+F   +  F+     + +K  DG+V DLGVSSMQ+D  DRGFSF   GPLDM
Sbjct: 62  EIQQNYGERFDFVETNFADSFAKLKEKKFDGIVLDLGVSSMQLDIADRGFSFLHDGPLDM 121

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RMS  G+SA + VN A  K+L  ++   G+E  + RIA  IV+ R++A   +T  L+ ++
Sbjct: 122 RMSGQGLSAEEFVNAAEEKELADVIYKYGDESFSRRIAKRIVEYRKTARIDSTTKLAEIV 181

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           + ++ F K  +I PAT++FQA+RI+VN+E+ EL Q L + +  LK  G L+VVSFHSLED
Sbjct: 182 RSSIGFRK-GKIDPATKTFQAIRIYVNDELGELEQFLVNVKNILKKDGRLVVVSFHSLED 240

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAH---PAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           R+VK FF   S K +        +         + IT K + P+ ++V  N R+RSAKLR
Sbjct: 241 RIVKNFFKENSEKPVVRSKYAKEDMTIDPNKWLKIITNKALAPSDKEVGLNIRARSAKLR 300

Query: 313 AGMRTVE 319
           A     E
Sbjct: 301 AAKAIYE 307


>gi|165933443|ref|YP_001650232.1| 16S rRNA m(4)C1402 methyltranserfase [Rickettsia rickettsii str.
           Iowa]
 gi|189082216|sp|B0BYA0|RSMH_RICRO RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262831529|sp|A8GSS6|RSMH_RICRS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|165908530|gb|ABY72826.1| S-adenosyl-methyltransferase [Rickettsia rickettsii str. Iowa]
          Length = 307

 Score =  236 bits (601), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 131/308 (42%), Positives = 187/308 (60%), Gaps = 7/308 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQ 75
           I  HV V+L +++  L+P  G+  LD TFGAGGYS++  +     V ALDRDP  +   +
Sbjct: 2   IQSHVSVMLNEMLEALSPKAGESYLDCTFGAGGYSKAILESCNCYVTALDRDPNVIKRAE 61

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           E  ++Y E+F   +  F+     + +K  DG+V DLGVSSMQ+D  DRGFSF   GPLDM
Sbjct: 62  EIQQNYGERFDFVETNFADSFAKLKEKKFDGIVLDLGVSSMQLDIADRGFSFLHDGPLDM 121

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RMS  G+SA + VN A  K+L  ++   G+E  + RIA  IV+ R++A   +T  L+ ++
Sbjct: 122 RMSGQGLSAEEFVNAAEEKELADVIYKYGDESFSRRIAKRIVEYRKTARIDSTGKLAEIV 181

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           + ++ F K  +I PAT++FQA+RI+VN+E+ EL Q L + +  LK  G L+VVSFHSLED
Sbjct: 182 RSSIGFRK-GKIDPATKTFQAIRIYVNDELGELEQFLVNVKNILKKDGRLVVVSFHSLED 240

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHP----AVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           R+VK FF   S K + VR     +          + IT K + P+ ++V  N R+RSAKL
Sbjct: 241 RIVKNFFKENSEKPV-VRSKYAKDDMTIDPNKWLKIITNKALAPSDKEVGLNIRARSAKL 299

Query: 312 RAGMRTVE 319
           RA     E
Sbjct: 300 RAAKAIYE 307


>gi|157964706|ref|YP_001499530.1| S-adenosyl-methyltransferase MraW [Rickettsia massiliae MTU5]
 gi|167011838|sp|A8F247|RSMH_RICM5 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|157844482|gb|ABV84983.1| S-adenosyl-methyltransferase MraW [Rickettsia massiliae MTU5]
          Length = 307

 Score =  236 bits (601), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 131/308 (42%), Positives = 187/308 (60%), Gaps = 7/308 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQ 75
           I  HVPV+L +++  L+P  G+  LD TFGAGGYS++  +     V ALDRDP  +   +
Sbjct: 2   IQSHVPVMLNEMLEALSPKDGESYLDCTFGAGGYSKAILESCNCYVTALDRDPNVIKRAE 61

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           E  ++Y E+F   +  F+     + +K  DG+V DLGVSSMQ+D  DRGFSF   GPLDM
Sbjct: 62  EIQQNYGERFDFVETNFADSFAKLKEKKFDGIVLDLGVSSMQLDIADRGFSFLHDGPLDM 121

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RMS  G+SA + VN A  K+L  ++   G+E  + RIA  IV+ R++A   +T  L+ ++
Sbjct: 122 RMSGQGLSAEEFVNTAEEKELADVIYKYGDESFSRRIAKRIVEYRKTARIDSTGKLAEIV 181

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           + ++ F K  +I PAT++FQA+RI+VN+E+ EL Q L + +  LK  G L+VVSFHSLED
Sbjct: 182 RSSIGFRK-GKIDPATKTFQAIRIYVNDELGELEQFLVNVKNILKKDGRLVVVSFHSLED 240

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHP----AVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           R+VK FF   S K + VR     +          + IT K +  + ++V  N R+RSAKL
Sbjct: 241 RIVKNFFKENSEKPV-VRSKYAKDDMTIDPNKWLKIITNKALASSDKEVGLNIRARSAKL 299

Query: 312 RAGMRTVE 319
           RA     E
Sbjct: 300 RAAKAIYE 307


>gi|15892780|ref|NP_360494.1| S-adenosyl-methyltransferase MraW [Rickettsia conorii str. Malish
           7]
 gi|20139037|sp|Q92HB4|RSMH_RICCN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|15619960|gb|AAL03395.1| unknown [Rickettsia conorii str. Malish 7]
          Length = 307

 Score =  236 bits (601), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 131/308 (42%), Positives = 186/308 (60%), Gaps = 7/308 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQ 75
           I  HV V+L +++  L+P  G+  LD TFGAGGYS++  +     V ALDRDP  +   +
Sbjct: 2   IQSHVSVMLNEMLEALSPKAGESYLDCTFGAGGYSKAILESCNCYVTALDRDPNVIKRAE 61

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           E  + Y E+F   +  F+     + +K  DG+V DLGVSSMQ+D  DRGFSF   GPLDM
Sbjct: 62  EIQQHYGERFDFVETNFADSFAKLKEKKFDGIVLDLGVSSMQLDIADRGFSFLHDGPLDM 121

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RMS  G+SA + VN A  K+L  ++   G+E  + RIA  IV+ R++A   +T  L+ ++
Sbjct: 122 RMSGQGLSAEEFVNAAEEKELADVIYKYGDESFSRRIAKRIVEYRKTARIDSTSKLAEIV 181

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           + ++ F K  +I PAT++FQA+RI+VN+E+ EL Q L + +  LK  G L+VVSFHSLED
Sbjct: 182 RSSIGFRK-GKIDPATKTFQAIRIYVNDELGELEQFLVNVKNILKKDGRLVVVSFHSLED 240

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHP----AVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           R+VK FF   S K + VR     +          + IT K + P+ ++V  N R+RSAKL
Sbjct: 241 RIVKNFFKENSEKPV-VRSKYAKDDMTIDPNKWLKIITNKALAPSDKEVGLNIRARSAKL 299

Query: 312 RAGMRTVE 319
           RA     E
Sbjct: 300 RAAKAIYE 307


>gi|258542962|ref|YP_003188395.1| S-adenosyl-methyltransferase MraW [Acetobacter pasteurianus IFO
           3283-01]
 gi|256634040|dbj|BAI00016.1| methytransferase MraW [Acetobacter pasteurianus IFO 3283-01]
 gi|256637100|dbj|BAI03069.1| methytransferase MraW [Acetobacter pasteurianus IFO 3283-03]
 gi|256640152|dbj|BAI06114.1| methytransferase MraW [Acetobacter pasteurianus IFO 3283-07]
 gi|256643209|dbj|BAI09164.1| methytransferase MraW [Acetobacter pasteurianus IFO 3283-22]
 gi|256646264|dbj|BAI12212.1| methytransferase MraW [Acetobacter pasteurianus IFO 3283-26]
 gi|256649317|dbj|BAI15258.1| methytransferase MraW [Acetobacter pasteurianus IFO 3283-32]
 gi|256652303|dbj|BAI18237.1| methytransferase MraW [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655361|dbj|BAI21288.1| methytransferase MraW [Acetobacter pasteurianus IFO 3283-12]
          Length = 335

 Score =  235 bits (600), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 140/324 (43%), Positives = 189/324 (58%), Gaps = 15/324 (4%)

Query: 7   KTMSSAIH-HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIAL 64
             +SS  H  T   H+PV+L +V+  L+PA G+ ILD TFG GGYS +  K    NV  +
Sbjct: 2   NALSSFSHPETAQGHIPVMLAEVLEYLHPADGERILDCTFGGGGYSSAILKSADCNVWGI 61

Query: 65  DRDPFAVSCGQETMR-----DYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSM 116
           DRDP A++ GQ   R     D   +  L Q +F  +       G+   DG+V DLGVSS 
Sbjct: 62  DRDPDAIARGQVLSRTFPTADGGSRLHLLQGSFGNMLALASAAGISTFDGIVLDLGVSSF 121

Query: 117 QIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
           Q+D  DRGFSF+  GPLDMRM  SG SA+D+VN+A   +L  I    GEE+ A R+A A+
Sbjct: 122 QLDEADRGFSFRMEGPLDMRMEKSGPSAADIVNKAPEAELADIFHFYGEERHARRLARAV 181

Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236
           V  R  APFQTT  L+ L++  +   ++  I  ATR+FQ LRI VN+E+ E+ +GL  A 
Sbjct: 182 VNARSEAPFQTTTQLADLVRSVIPKDRSG-IDSATRAFQGLRIAVNDELGEIERGLEQAL 240

Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA-HPAV---FQSITKKV 292
             L  GG L+VVSFHSLEDR+ K+     +GK  +     P  A  PA    F ++T K 
Sbjct: 241 DMLAPGGRLVVVSFHSLEDRIAKRMVQHATGKDKSFSRYDPRAAGTPAPETDFVALTHKA 300

Query: 293 VVPTQEDVAFNRRSRSAKLRAGMR 316
             P+  + + N R+RSA+LRA M+
Sbjct: 301 RRPSDTECSHNPRARSARLRAVMK 324


>gi|292572190|gb|ADE30105.1| S-adenosyl-methyltransferase MraW [Rickettsia prowazekii Rp22]
          Length = 306

 Score =  235 bits (600), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 127/308 (41%), Positives = 193/308 (62%), Gaps = 15/308 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-----FCKMGSNVIALDRDPFAVSCG 74
           H+PV+L +V+A+L P   +  LD TFGAGGYS +     +C    +V +LDRDP  +   
Sbjct: 5   HIPVMLSEVLAVLAPKGYESYLDCTFGAGGYSNAILNSCYC----SVTSLDRDPNVIESV 60

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++  +DY E+F+  +  F+     +  K  DG+V DLGVSSMQ+D  DRGFSF   GPLD
Sbjct: 61  EKIKQDYGERFNFIKTNFADSFRKLKHKKFDGIVMDLGVSSMQLDIADRGFSFLYDGPLD 120

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRMS  G SA + VN A+ +++  ++   G E  + RIA +IV+ R++A   +T+ L+ +
Sbjct: 121 MRMSVQGFSAEEFVNTADEEEIADVIYKYGNESLSRRIAKSIVEYRKTARIDSTRKLAEI 180

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           ++ ++ F K  +I  AT++FQA+RI++NNE+ EL Q L + +  LK  G L+VVSFHSLE
Sbjct: 181 VRYSIGFRK-GKIDSATKTFQAIRIYINNELGELEQFLANVKNILKKDGRLVVVSFHSLE 239

Query: 255 DRLVKKFFASRSGKVMA----VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           DR+VK FF   S K +A     +  I  + +  + + IT KV+ P+ +++  N R+RSAK
Sbjct: 240 DRIVKNFFKENSEKQVARSKYAKDEIKIDPNKWL-KIITPKVLTPSSQEIRLNVRARSAK 298

Query: 311 LRAGMRTV 318
           LRA  + +
Sbjct: 299 LRAAKKII 306


>gi|239947593|ref|ZP_04699346.1| S-adenosyl-methyltransferase MraW [Rickettsia endosymbiont of
           Ixodes scapularis]
 gi|241068474|ref|XP_002408444.1| S-adenosyl-methyltransferase mraw, putative [Ixodes scapularis]
 gi|215492432|gb|EEC02073.1| S-adenosyl-methyltransferase mraw, putative [Ixodes scapularis]
 gi|239921869|gb|EER21893.1| S-adenosyl-methyltransferase MraW [Rickettsia endosymbiont of
           Ixodes scapularis]
          Length = 307

 Score =  235 bits (599), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 126/307 (41%), Positives = 185/307 (60%), Gaps = 5/307 (1%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQ 75
           I  HV V+L +++  L+P  G+  LD TFGAGGYS++  +     + ALDRDP  +   +
Sbjct: 2   IQSHVSVMLNEMLEALSPKDGESYLDCTFGAGGYSKAILESYDCYITALDRDPNVIKRAE 61

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           E  ++Y E+F   +  F+     +  K  DG+V DLGVSSMQ+D  DRGFSF   GPLDM
Sbjct: 62  EIKQNYGERFDFIETNFADSFTKLKKKKFDGIVLDLGVSSMQLDIADRGFSFLHDGPLDM 121

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RMS  G++A + VN A  K+L  ++   G+E  + RIA  IV+ R++A   +T  L+ ++
Sbjct: 122 RMSGQGLNAEEFVNTAEEKELADVIYKYGDESFSRRIARRIVEYRKTARIDSTDKLAEIV 181

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           + ++ F K  +I PAT++FQA+RI++N+E+ EL + L + +  LK  G L+VVSFHSLED
Sbjct: 182 RNSIGFRK-GKIDPATKTFQAIRIYINDELGELERFLANVKNILKKDGRLVVVSFHSLED 240

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAH---PAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           R+VK FF   S K +A       +         + IT K + P+ ++V  N R+RSAKLR
Sbjct: 241 RIVKNFFKENSEKPVARSKYAKDDMAIDPDKWLKIITNKALAPSDKEVGLNIRARSAKLR 300

Query: 313 AGMRTVE 319
           A     E
Sbjct: 301 AAKAIYE 307


>gi|148695830|gb|EDL27777.1| methyltransferase 5 domain containing 1, isoform CRA_a [Mus
           musculus]
 gi|148695831|gb|EDL27778.1| methyltransferase 5 domain containing 1, isoform CRA_a [Mus
           musculus]
          Length = 339

 Score =  234 bits (598), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 138/334 (41%), Positives = 192/334 (57%), Gaps = 37/334 (11%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCGQET 77
           H+PV++++V+  L P  G+V LD TFG+GG++R+  +   +V+  ALDRDP A +  ++ 
Sbjct: 5   HIPVMVDQVVHCLAPQKGQVFLDMTFGSGGHTRAILQKEPDVMVYALDRDPVAYAIAEQL 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            R Y  Q       FSQ +  +   GV     DG++ DLG SSMQ+D  +RGFS +K GP
Sbjct: 65  SRLYPTQIQALLGQFSQAEALLMKAGVQPGTIDGILMDLGCSSMQLDAPERGFSLRKDGP 124

Query: 133 LDMRMSCSGI----SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           LDMRM         +ASDVVN  + + L  IL   GEEK A +IA AI++ R + P   T
Sbjct: 125 LDMRMDGDRYPDTPTASDVVNALDQQALASILRAYGEEKHAKKIASAIIQARSTYPISRT 184

Query: 189 QDLSSLIQ-----KTVYFSKN---NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           Q L+S++        VY  K+      H AT++FQALRIFVNNE+ EL  GLR+AEK LK
Sbjct: 185 QQLASIVAGAFPPSAVYARKDLLQRSTHIATKTFQALRIFVNNELNELYAGLRTAEKFLK 244

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKV---MAVRHMIPSNAH---------------P 282
            GG L+ +SFHSLEDR+VK+F    S      +++R  +   +                P
Sbjct: 245 TGGRLVALSFHSLEDRIVKRFLLGISMTERFNLSIRQKVKQTSQLDSDQETEERHSVRAP 304

Query: 283 AVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
             ++ I KKV+ P  +DV  N R RSAKLRA ++
Sbjct: 305 LKWELIHKKVLTPEDQDVQDNPRGRSAKLRAAIK 338


>gi|67459296|ref|YP_246920.1| S-adenosyl-methyltransferase MraW [Rickettsia felis URRWXCal2]
 gi|75536274|sp|Q4UL18|RSMH_RICFE RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|67004829|gb|AAY61755.1| S-adenosyl-methyltransferase MraW [Rickettsia felis URRWXCal2]
          Length = 306

 Score =  234 bits (598), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 126/303 (41%), Positives = 185/303 (61%), Gaps = 5/303 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQETM 78
           H+PV+L +++A L P  G+  LD TFGAGGYS++  +     + ALDRDP  +   +E  
Sbjct: 5   HIPVMLNEMLANLAPKDGEFYLDCTFGAGGYSKAILESCDCYITALDRDPNVIKKAEEIK 64

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138
           ++Y E+F   +  F+     + +K  DGVV DLGVSSMQ+D  DRGFSF   GPLDMRMS
Sbjct: 65  QNYGERFDFIETNFADSFAKLKEKKFDGVVLDLGVSSMQLDIADRGFSFLHDGPLDMRMS 124

Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198
             G+SA + VN A  K+L  ++   G+E  + RIA  IV+ R++    +T  L+ +++ +
Sbjct: 125 GQGLSAEEFVNIAEEKELADVIYKYGDESFSRRIAKRIVEYRKTTRIDSTGKLAQIVRSS 184

Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258
           + F K  +I PAT++FQA+RI++NNE+ EL + L + +  LK  G L+VVSFHSLEDR+V
Sbjct: 185 IGFRK-GKIDPATKTFQAIRIYINNELGELERFLANVKNILKKDGRLVVVSFHSLEDRIV 243

Query: 259 KKFFASRSGKVMAVRHMIPSNAH---PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           K FF   S K +A       +         + IT K +  + ++V  N R+RSAKLRA  
Sbjct: 244 KNFFKENSEKPVARSKYAKDDIAIDPDKWLKIITNKALATSDKEVGLNIRARSAKLRAAK 303

Query: 316 RTV 318
           + +
Sbjct: 304 KIL 306


>gi|6685115|gb|AAF23786.1|AF213822_1 hypothetical protein [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 333

 Score =  234 bits (598), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 140/323 (43%), Positives = 197/323 (60%), Gaps = 9/323 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSNVIALDRDPFAVSCGQ 75
           +  H+PVLL++VI  L+P  G + +D TFGAGGYSR+   K  + VIA DRDP A+  G 
Sbjct: 7   LAPHIPVLLDEVIEALSPVEGGIYIDGTFGAGGYSRAILEKADTQVIAFDRDPDAIREGA 66

Query: 76  ETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +  YK +  L    FS +    D +  K VDG+VFD+GVSSMQID  +RGFS Q  GP
Sbjct: 67  SLVEKYKGRLRLVNDCFSNIGHHLDALDIKTVDGMVFDIGVSSMQIDRPERGFSIQADGP 126

Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           LDMRM+ +G+SA +++N A  KD+  +L + GEE+Q+ R+A AIV  R +A  +    L+
Sbjct: 127 LDMRMAQAGLSAEELLNNAQEKDIADVLYLYGEERQSRRVATAIV--RGTAFKRRLFRLA 184

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I++++ +   ++  PA   FQA+RI +N E++EL  GL++AE+ LK  G L VV+FHS
Sbjct: 185 KVIRQSLGYRPFDKKDPAAHCFQAIRIHLNRELDELKDGLQTAERFLKTKGCLAVVTFHS 244

Query: 253 LEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK F    +G+   V RH         VF S   + V   + ++A N R+RSA L
Sbjct: 245 LEDRIVKHFMREHAGQTGQVSRHQPVIPQQNPVFFSKPARPVRAGETELARNPRARSATL 304

Query: 312 RAGMRTVERSIEDDSF--VHLPR 332
           RA  RT     ED S    H+PR
Sbjct: 305 RAVYRTETPFSEDISRPDTHIPR 327


>gi|27229243|ref|NP_084066.2| probable methyltransferase-like protein 15 [Mus musculus]
 gi|81906157|sp|Q9DCL4|MET15_MOUSE RecName: Full=Probable methyltransferase-like protein 15; AltName:
           Full=Methyltransferase 5 domain-containing protein 1
 gi|26362646|dbj|BAB22281.2| unnamed protein product [Mus musculus]
 gi|109730967|gb|AAI17550.1| Methyltransferase 5 domain containing 1 [Mus musculus]
 gi|109732458|gb|AAI15927.1| Methyltransferase 5 domain containing 1 [Mus musculus]
 gi|123225263|emb|CAM17438.1| methyltransferase 5 domain containing 1 [Mus musculus]
 gi|123231531|emb|CAM24681.1| methyltransferase 5 domain containing 1 [Mus musculus]
 gi|123231533|emb|CAM25317.1| methyltransferase 5 domain containing 1 [Mus musculus]
          Length = 406

 Score =  234 bits (598), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 138/334 (41%), Positives = 192/334 (57%), Gaps = 37/334 (11%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCGQET 77
           H+PV++++V+  L P  G+V LD TFG+GG++R+  +   +V+  ALDRDP A +  ++ 
Sbjct: 72  HIPVMVDQVVHCLAPQKGQVFLDMTFGSGGHTRAILQKEPDVMVYALDRDPVAYAIAEQL 131

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            R Y  Q       FSQ +  +   GV     DG++ DLG SSMQ+D  +RGFS +K GP
Sbjct: 132 SRLYPTQIQALLGQFSQAEALLMKAGVQPGTIDGILMDLGCSSMQLDAPERGFSLRKDGP 191

Query: 133 LDMRMSCSGI----SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           LDMRM         +ASDVVN  + + L  IL   GEEK A +IA AI++ R + P   T
Sbjct: 192 LDMRMDGDRYPDTPTASDVVNALDQQALASILRAYGEEKHAKKIASAIIQARSTYPISRT 251

Query: 189 QDLSSLIQ-----KTVYFSKN---NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           Q L+S++        VY  K+      H AT++FQALRIFVNNE+ EL  GLR+AEK LK
Sbjct: 252 QQLASIVAGAFPPSAVYARKDLLQRSTHIATKTFQALRIFVNNELNELYAGLRTAEKFLK 311

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKV---MAVRHMIPSNAH---------------P 282
            GG L+ +SFHSLEDR+VK+F    S      +++R  +   +                P
Sbjct: 312 TGGRLVALSFHSLEDRIVKRFLLGISMTERFNLSIRQKVKQTSQLDSDQETEERHSVRAP 371

Query: 283 AVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
             ++ I KKV+ P  +DV  N R RSAKLRA ++
Sbjct: 372 LKWELIHKKVLTPEDQDVQDNPRGRSAKLRAAIK 405


>gi|83312939|ref|YP_423203.1| S-adenosyl-methyltransferase MraW [Magnetospirillum magneticum
           AMB-1]
 gi|123540765|sp|Q2W0I1|RSMH_MAGSA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|82947780|dbj|BAE52644.1| S-adenosyl-methyltransferase mraW [Magnetospirillum magneticum
           AMB-1]
          Length = 318

 Score =  234 bits (597), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 131/296 (44%), Positives = 182/296 (61%), Gaps = 8/296 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78
           H+PVLL +VIA L P    V LD TFGAGGYSR+     +  V A+DRDP AV+ G+   
Sbjct: 6   HIPVLLAEVIAALAPRNDGVYLDGTFGAGGYSRAILAASACRVWAIDRDPTAVARGKLLE 65

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
                +FS+ +  F  +   +  +GV   DG+  D+GVSSMQID  +RGFSF K GPLDM
Sbjct: 66  EGSAGRFSMIEGRFGDMDSLLRQQGVNQVDGIALDIGVSSMQIDQPERGFSFAKDGPLDM 125

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RM   G SA+D+VN     +L  I+   GEE+ + R+A AIV+ R+   F+ T +L+ ++
Sbjct: 126 RMETKGPSAADMVNDTPETELANIIYRYGEERLSRRVAKAIVEARRLKRFERTGELAEVV 185

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           +K V  S +  I PATR+FQALRI VN+E+ EL +GL +AE+ L  GG L VV+FHSLED
Sbjct: 186 RKVVPRSGDG-IDPATRTFQALRIAVNDELGELERGLEAAERLLAPGGHLAVVTFHSLED 244

Query: 256 RLVKKFFASRSGKVMAVRHMIP---SNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           R+VK F  +RSG+       +P    +   A F  +++K + P  ++   N R+RS
Sbjct: 245 RVVKSFLKARSGEAARPSRHVPQAQGSGPAASFALLSRKAIGPAPDEARANPRARS 300


>gi|119383335|ref|YP_914391.1| S-adenosyl-methyltransferase MraW [Paracoccus denitrificans PD1222]
 gi|262824738|sp|A1AZK1|RSMH_PARDP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|119373102|gb|ABL68695.1| S-adenosyl-methyltransferase MraW [Paracoccus denitrificans PD1222]
          Length = 322

 Score =  234 bits (597), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 130/301 (43%), Positives = 184/301 (61%), Gaps = 9/301 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETM 78
           H+PVLL  ++  + P  G  + D TFGAGGY+R   + G++ VI +DRDP      +   
Sbjct: 6   HIPVLLGPLLRAVAPVEGTWV-DGTFGAGGYARGLLEQGADRVIGIDRDPAVFRMAEAWA 64

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138
            +Y ++  L + TFS L D +    VDGVV DLGVSSMQ+D  +RGFSF + GPLDMRM 
Sbjct: 65  GEYGDRLRLVEGTFSDL-DSLAGGPVDGVVLDLGVSSMQLDQPERGFSFLRDGPLDMRMG 123

Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198
             G +A++++N A  + +  +L + GEE+ + RIA AIV  R   P   T  LS ++   
Sbjct: 124 GDGPTAAELLNTAPEQVIADVLYLYGEERASRRIAKAIVAAR---PLSRTGQLSDIVSAC 180

Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258
           +   K  + HP+TR+FQA+RI+VN+E  +L  GL +AE+AL+ GG L VVSFHSLEDR+V
Sbjct: 181 LPRPKPGQSHPSTRAFQAIRIWVNDEFGQLVAGLAAAERALRPGGKLAVVSFHSLEDRIV 240

Query: 259 KKFFASRSGKVMAVRHMIPSNA--HPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           K+F  +RS          P  A   PA F    ++ + P + ++A N R+RSA LR G+R
Sbjct: 241 KRFMQARSNSAGGGSRYAPEAAREEPA-FTLPFRRAIGPDEAELATNPRARSALLRVGIR 299

Query: 317 T 317
           T
Sbjct: 300 T 300


>gi|288958915|ref|YP_003449256.1| S-adenosyl-methyltransferase [Azospirillum sp. B510]
 gi|288911223|dbj|BAI72712.1| S-adenosyl-methyltransferase [Azospirillum sp. B510]
          Length = 324

 Score =  234 bits (596), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 133/292 (45%), Positives = 179/292 (61%), Gaps = 9/292 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78
           H+PVLL++VIA L P  G + +D TFGAGGYSR+  +  S  VI +DRDP A+  G+   
Sbjct: 7   HIPVLLDEVIAALAPRDGALYVDGTFGAGGYSRALLRSASCRVIGIDRDPAAIERGRVLA 66

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           +++  +  + +  F  +   +   GVD   GV  D+GVSS QID  +RGFSF+  GPLDM
Sbjct: 67  QEFPGRLDVIEGRFGDMDQLLARHGVDRVDGVALDVGVSSPQIDEPERGFSFRFDGPLDM 126

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RM   G +A+DVVN A+  +L  IL  LGEE+ A R+A AIV  R+ AP + T  L+ +I
Sbjct: 127 RMGRDGPTAADVVNGADEGELADILYHLGEERMARRVARAIVAARREAPIERTARLADII 186

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           +  V   K + I PATRSFQALRI VN+E+ EL +GL +AE  L  GG L VVSFHSLED
Sbjct: 187 RSVVPKGKGDGIDPATRSFQALRIHVNDELGELRRGLSAAESLLAPGGRLAVVSFHSLED 246

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNA----HPAVFQSITKKVVVPTQEDVAFN 303
           R VK F   RS    +     P  A    HP+ F+ +++K V P++ +   N
Sbjct: 247 REVKAFLRERSSPPPSPSRHTPVTAVAAHHPS-FRLLSRKPVDPSEAEARNN 297


>gi|57239214|ref|YP_180350.1| S-adenosyl-methyltransferase MraW [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58579172|ref|YP_197384.1| S-adenosyl-methyltransferase MraW [Ehrlichia ruminantium str.
           Welgevonden]
 gi|68565416|sp|Q5HB44|RSMH_EHRRW RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|57161293|emb|CAH58214.1| putative S-adenosyl-methyltransferase MraW [Ehrlichia ruminantium
           str. Welgevonden]
 gi|58417798|emb|CAI27002.1| S-adenosyl-methyltransferase mraW [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 301

 Score =  233 bits (595), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 131/304 (43%), Positives = 190/304 (62%), Gaps = 13/304 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78
           H PVLL++++ +L+P  G + +DATFG+GGYSR+        V A+D+D +  +  ++  
Sbjct: 3   HTPVLLKEMLDILSPQNGGIYVDATFGSGGYSRAILNSADCQVYAIDQDEYTYTFYEKLS 62

Query: 79  RDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
            D+  +   F   FS++Q  + +   K VDGVVFD+GVSSMQ++   RGFSF K+GPLDM
Sbjct: 63  NDFPNRIHFFINKFSKIQQILNNVQIKKVDGVVFDIGVSSMQLEDASRGFSFSKNGPLDM 122

Query: 136 RMSCS--GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           RMS S  G+ A   VN  +  ++  ++   G EK + +IA AIV  R      TT +L+S
Sbjct: 123 RMSTSLSGVDARMFVNTVSEVEMANVIYQYGGEKYSRKIARAIVNARNKNMINTTGELAS 182

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           +I+  V  SKN+ I PATR+FQA+RI+VN E+EEL +G+  A   L  GG +IV+SFHSL
Sbjct: 183 IIRSVVSRSKNHSIDPATRTFQAIRIWVNKELEELEKGIACAANILNQGGKIIVISFHSL 242

Query: 254 EDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           EDR+VK  F     GK + + ++         FQ I KK++ PT E++  N R+RSAKLR
Sbjct: 243 EDRIVKVIFKLLCDGKSVNLLNL------GLGFQLINKKIIRPTAEEIHSNPRARSAKLR 296

Query: 313 AGMR 316
           A ++
Sbjct: 297 AILK 300


>gi|58617225|ref|YP_196424.1| S-adenosyl-methyltransferase MraW [Ehrlichia ruminantium str.
           Gardel]
 gi|68565410|sp|Q5FH93|RSMH_EHRRG RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|58416837|emb|CAI27950.1| S-adenosyl-methyltransferase mraW [Ehrlichia ruminantium str.
           Gardel]
          Length = 301

 Score =  233 bits (594), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 131/304 (43%), Positives = 190/304 (62%), Gaps = 13/304 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78
           H PVLL++++ +L+P  G + +DATFG+GGYSR+        V A+D+D +  +  ++  
Sbjct: 3   HTPVLLKEMLDILSPQNGGIYVDATFGSGGYSRAILNSADCQVYAIDQDEYTYTFYEKLS 62

Query: 79  RDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
            D+  +   F   FS++Q  + +   K VDGVVFD+GVSSMQ++   RGFSF K+GPLDM
Sbjct: 63  HDFPNRIHFFINKFSKIQQILNNVQIKKVDGVVFDIGVSSMQLEDASRGFSFSKNGPLDM 122

Query: 136 RMSCS--GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           RMS S  G+ A   VN  +  ++  ++   G EK + +IA AIV  R      TT +L+S
Sbjct: 123 RMSTSLSGVDARMFVNTVSEVEIANVIYQYGGEKYSRKIARAIVNARNKNMINTTGELAS 182

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           +I+  V  SKN+ I PATR+FQA+RI+VN E+EEL +G+  A   L  GG +IV+SFHSL
Sbjct: 183 IIRSVVSRSKNHSIDPATRTFQAIRIWVNKELEELEKGIACAANILNQGGKIIVISFHSL 242

Query: 254 EDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           EDR+VK  F     GK + + ++         FQ I KK++ PT E++  N R+RSAKLR
Sbjct: 243 EDRIVKVMFKLLCDGKSVNLLNL------GLGFQLINKKIIRPTAEEIHSNPRARSAKLR 296

Query: 313 AGMR 316
           A ++
Sbjct: 297 AILK 300


>gi|76779305|gb|AAI06187.1| Methyltransferase 5 domain containing 1 [Mus musculus]
          Length = 406

 Score =  233 bits (593), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 137/334 (41%), Positives = 191/334 (57%), Gaps = 37/334 (11%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCGQET 77
           H+PV++++V+  L P  G+V LD TFG+GG++R+  +   +V+  ALDRDP A +  ++ 
Sbjct: 72  HIPVMVDQVVHCLAPQKGQVFLDMTFGSGGHTRAILQKEPDVMVYALDRDPVAYAIAEQL 131

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            R Y  Q       FSQ +  +   GV     DG++ DLG  SMQ+D  +RGFS +K GP
Sbjct: 132 SRLYPTQIQALLGQFSQAEALLMKAGVQPGTIDGILMDLGCPSMQLDAPERGFSLRKDGP 191

Query: 133 LDMRMSCSGI----SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           LDMRM         +ASDVVN  + + L  IL   GEEK A +IA AI++ R + P   T
Sbjct: 192 LDMRMDGDRYPDTPTASDVVNALDQQALASILRAYGEEKHAKKIASAIIQARSTYPISRT 251

Query: 189 QDLSSLIQ-----KTVYFSKN---NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           Q L+S++        VY  K+      H AT++FQALRIFVNNE+ EL  GLR+AEK LK
Sbjct: 252 QQLASIVAGAFPPSAVYARKDLLQRSTHIATKTFQALRIFVNNELNELYAGLRTAEKFLK 311

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKV---MAVRHMIPSNAH---------------P 282
            GG L+ +SFHSLEDR+VK+F    S      +++R  +   +                P
Sbjct: 312 TGGRLVALSFHSLEDRIVKRFLLGISMTERFNLSIRQKVKQTSQLDSDQETEERHSVRAP 371

Query: 283 AVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
             ++ I KKV+ P  +DV  N R RSAKLRA ++
Sbjct: 372 LKWELIHKKVLTPEDQDVQDNPRGRSAKLRAAIK 405


>gi|296448271|ref|ZP_06890165.1| S-adenosyl-methyltransferase MraW [Methylosinus trichosporium OB3b]
 gi|296254223|gb|EFH01356.1| S-adenosyl-methyltransferase MraW [Methylosinus trichosporium OB3b]
          Length = 338

 Score =  232 bits (591), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 147/323 (45%), Positives = 197/323 (60%), Gaps = 10/323 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF-CKMGSNVIALDRDPFAVSCGQETM 78
           H+PVLL++ +A L P  G V LDATFGAGGY+R+      + V+ALDRDP A+  G   +
Sbjct: 11  HIPVLLDEAMAALGPRSGGVYLDATFGAGGYTRALLAHENTRVLALDRDPRAIRDGAALV 70

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
                + +L +A FS+L       G+   DG+V D+GVSSMQ D  +RGFSF+  GPLDM
Sbjct: 71  AAAGGRLTLVEARFSELAQVAGRTGLAPLDGIVADIGVSSMQFDEAERGFSFRNDGPLDM 130

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RM  SG SA+D+V +A  + L  IL   GEE+ + RIA AIV  R     +TT  L+++I
Sbjct: 131 RMEGSGRSAADIVAEAEEEALADILYHYGEERASRRIARAIVHARLERKIETTGALAAII 190

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           ++     +   IHPAT+SFQALRI VN+E+ EL   L  AE+ALK GG L++VSFHSLED
Sbjct: 191 ERAAP-GRPGEIHPATKSFQALRIAVNDELGELVAALAGAERALKPGGKLVIVSFHSLED 249

Query: 256 RLVKKFFASRSGK--VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           R+VK+F A RSG+    + R        P  F     K + P++ ++A N RSRSA+LR 
Sbjct: 250 RIVKQFLAERSGRGETRSRRLPGEPVPPPPTFIVDDFKPLAPSEREIAANPRSRSARLRV 309

Query: 314 GMRT--VERSIEDDSFVHLPRLP 334
             RT    R +  D+   L RLP
Sbjct: 310 ATRTDAPPRPV-GDALARLARLP 331


>gi|307294504|ref|ZP_07574346.1| S-adenosyl-methyltransferase MraW [Sphingobium chlorophenolicum
           L-1]
 gi|306878978|gb|EFN10196.1| S-adenosyl-methyltransferase MraW [Sphingobium chlorophenolicum
           L-1]
          Length = 321

 Score =  231 bits (590), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 135/303 (44%), Positives = 196/303 (64%), Gaps = 9/303 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+PVL+E+V+  L+  PG+  +D TFGAGGYS +    G+ V A DRDP A+  GQ  + 
Sbjct: 14  HIPVLIEEVLHALSINPGEAHVDGTFGAGGYSSAMAAKGAKVFAFDRDPDAIREGQ-ALA 72

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
           D K   +L    FS+++  + ++GV    GV  D+GVSSMQ+D  +RGFSFQ  GPLDM 
Sbjct: 73  DEK-GITLIAGEFSRMEALLAERGVTSVAGVTLDIGVSSMQLDRPERGFSFQGDGPLDMT 131

Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
           MS SG++A+D +N A  +++  IL   GEE ++ R+A AIV+ R   P + T  L+++++
Sbjct: 132 MSQSGMNAADFLNNAPEEEIANILYRYGEEPRSRRVAKAIVEAR---PLERTGQLANIVR 188

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
           K +    +++  PATR+FQA+RI VN E+EEL +GL +AE  L+ GG L +V+FHSLEDR
Sbjct: 189 KALGHKPHDKKDPATRTFQAIRIHVNRELEELERGLEAAEAILEEGGRLAIVTFHSLEDR 248

Query: 257 LVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           +VK+F  +RS G+    RHM    A PA   +   K V P + ++A N R+RSA LR+ +
Sbjct: 249 IVKQFLRNRSGGEAGGSRHMPQKQAGPAPTFAKPAKAVRPGEAELARNPRARSATLRSAI 308

Query: 316 RTV 318
           RT 
Sbjct: 309 RTA 311


>gi|55981045|ref|YP_144342.1| S-adenosyl-methyltransferase MraW [Thermus thermophilus HB8]
 gi|68565453|sp|Q5SJD8|RSMH_THET8 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|56966831|pdb|1WG8|A Chain A, Crystal Structure Of A Predicted S-Adenosylmethionine-
           Dependent Methyltransferase Tt1512 From Thermus
           Thermophilus Hb8.
 gi|56966832|pdb|1WG8|B Chain B, Crystal Structure Of A Predicted S-Adenosylmethionine-
           Dependent Methyltransferase Tt1512 From Thermus
           Thermophilus Hb8.
 gi|55772458|dbj|BAD70899.1| conserved hypothetical protein [Thermus thermophilus HB8]
          Length = 285

 Score =  231 bits (590), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 128/297 (43%), Positives = 180/297 (60%), Gaps = 26/297 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           HVPVL ++ + LL   PG V +DAT G  G++R   + G  VI LD+DP AV+  +    
Sbjct: 6   HVPVLYQEALDLLAVRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKGL-- 63

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
            +    ++ Q  F  L+ ++   GV   DG++ DLGVSS  +D   RGFS+QK GPLDMR
Sbjct: 64  -HLPGLTVVQGNFRHLKRHLAALGVERVDGILADLGVSSFHLDDPSRGFSYQKEGPLDMR 122

Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
           M   G +A +VVN+  ++ L R+L  LGEE QA RIA AIV  R+ AP +TT  L+ +++
Sbjct: 123 MGLEGPTAKEVVNRLPLEALARLLRELGEEPQAYRIARAIVAAREKAPIETTTQLAEIVR 182

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
           K V F +    HPA ++FQALRI+VN+E+  L + L  A + L  GG L+V++FHSLEDR
Sbjct: 183 KAVGFRRAG--HPARKTFQALRIYVNDELNALKEFLEQAAEVLAPGGRLVVIAFHSLEDR 240

Query: 257 LVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           +VK+F      KV+                  TKK +VP++++ A N R+RSAKLRA
Sbjct: 241 VVKRFLRESGLKVL------------------TKKPLVPSEKEAAQNPRARSAKLRA 279


>gi|157803594|ref|YP_001492143.1| S-adenosyl-methyltransferase MraW [Rickettsia canadensis str.
           McKiel]
 gi|167011837|sp|A8EYC5|RSMH_RICCK RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|157784857|gb|ABV73358.1| S-adenosyl-methyltransferase MraW [Rickettsia canadensis str.
           McKiel]
          Length = 308

 Score =  231 bits (589), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 125/306 (40%), Positives = 183/306 (59%), Gaps = 9/306 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQETM 78
           H+PV+L +++A L P  GK  LD TFGAGGYS++  +     V ALDRDP  +   +   
Sbjct: 5   HIPVMLNEMLANLAPQDGKSYLDCTFGAGGYSKAILESCNCYVTALDRDPNVIKRAERIK 64

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138
           ++Y  +F   +  F+     + +K  DG+V DLGVSSMQ+D  DRGFSF    PLDMRMS
Sbjct: 65  QNYSTRFDFIETNFADSFAKLKEKKFDGIVLDLGVSSMQLDIADRGFSFLHDSPLDMRMS 124

Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198
             G+SA + +N    K+L  I+   G+E  + RIA  IV+ R++A   +T  L+ +++ +
Sbjct: 125 GQGLSAEEFINTVEEKELADIIYKYGDESFSRRIAKRIVEYRKTARINSTGKLAEIVRNS 184

Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258
           + F K  +I PAT++FQA+RI++N+E+ EL + L + +  L   G L++VSFHSLEDR+V
Sbjct: 185 IGFRK-GKIDPATKTFQAIRIYINDELRELERFLANVQNILNKDGRLVIVSFHSLEDRIV 243

Query: 259 KKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           K FF   S K +A      S  +P +      + IT K   P+ ++V  N R+RSAKLRA
Sbjct: 244 KHFFKENSEKPVARSKY--SKDNPVIDPNKWLKIITNKAEAPSDKEVELNVRARSAKLRA 301

Query: 314 GMRTVE 319
                E
Sbjct: 302 AKAIYE 307


>gi|289547926|ref|YP_003472914.1| S-adenosyl-methyltransferase MraW [Thermocrinis albus DSM 14484]
 gi|289181543|gb|ADC88787.1| S-adenosyl-methyltransferase MraW [Thermocrinis albus DSM 14484]
          Length = 290

 Score =  231 bits (588), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 135/304 (44%), Positives = 184/304 (60%), Gaps = 24/304 (7%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74
           I  H PVLLE    LL    GK+ +D T GAGG++R   +    + VI +DRDP A+   
Sbjct: 2   IMHHFPVLLETATDLLLGNGGKLYVDCTVGAGGHTRRILEKNPQAYVIGIDRDPQALKLA 61

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +E +R+++ +FSL+ A F  L + +  +GV   DG +FDLG+S MQ+    RGFSFQ+  
Sbjct: 62  EENLREFEGRFSLYHANFVHLDEVLLQEGVEQVDGFLFDLGMSMMQLKSA-RGFSFQRDE 120

Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM  S  I+A  VVN+ + +DL RIL   GEE  ASRIA AIV RR+  P +TT +
Sbjct: 121 FLDMRMDPSDPITAYHVVNRYSQRDLERILREYGEEPYASRIARAIVLRRKEKPIETTGE 180

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L  ++   V + +  RIHPATR FQA+RI VN E+  L + L    K L+ GG L+V+SF
Sbjct: 181 LVQIVLSVVPY-RRGRIHPATRVFQAIRIEVNGELRNLKEALPKTLKFLRKGGRLVVISF 239

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDR+VK FF   S ++                + +TKK + P++E++  N  SRSAK
Sbjct: 240 HSLEDRIVKNFFKEHSHEI----------------KPLTKKPITPSREEIEKNPPSRSAK 283

Query: 311 LRAG 314
           LRAG
Sbjct: 284 LRAG 287


>gi|157825941|ref|YP_001493661.1| S-adenosyl-methyltransferase MraW [Rickettsia akari str. Hartford]
 gi|167011835|sp|A8GP28|RSMH_RICAH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|157799899|gb|ABV75153.1| S-adenosyl-methyltransferase MraW [Rickettsia akari str. Hartford]
          Length = 306

 Score =  231 bits (588), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 123/303 (40%), Positives = 186/303 (61%), Gaps = 5/303 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQETM 78
           H+PV+L +V+ +L+P  G+  LD TFGAGGYS++  +     V+ALDRDP  +   +E  
Sbjct: 5   HIPVMLSEVLKVLDPKGGEFYLDCTFGAGGYSKAILESCDCYVVALDRDPNVIKKAEEIK 64

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138
           ++Y E+F      F+     + +K  DG+V DLGVSSMQ+D  DRGFSF   GPLDMRMS
Sbjct: 65  QNYVERFDFIATNFADSFAKLKEKQFDGIVLDLGVSSMQLDVADRGFSFLHDGPLDMRMS 124

Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198
             G SA + VN    K++  I+   G E  + RIA +IV+ R++A   +T  L+ +++ +
Sbjct: 125 GQGFSAEEFVNTLEEKEIADIIYKYGNESFSRRIAKSIVEYRKTARIDSTGKLAEIVRSS 184

Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258
           + F K  +I PAT++FQA+RI++N+E+ EL + L + +  LK  G L+VVSFHSLED ++
Sbjct: 185 IGFRK-GKIDPATKTFQAIRIYINDELGELERFLMNVKNILKKDGRLVVVSFHSLEDMII 243

Query: 259 KKFFASRSGKVMAVRHMIPSN--AHPAVF-QSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           K FF   S K +A       +    P  + + IT K + P+ +++  N R+RSAKLR   
Sbjct: 244 KNFFKENSEKPVARSKYAKDDIIIDPNKWLRIITNKALAPSDKEIRLNIRARSAKLRTAK 303

Query: 316 RTV 318
           + +
Sbjct: 304 KIL 306


>gi|291384760|ref|XP_002709072.1| PREDICTED: hypothetical protein [Oryctolagus cuniculus]
          Length = 407

 Score =  230 bits (587), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 138/335 (41%), Positives = 193/335 (57%), Gaps = 38/335 (11%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCGQET 77
           H+PV++++V+  L P  G+V LD TFG+GG+SR+  +  S++   ALDRDP A +  ++ 
Sbjct: 72  HIPVMVDEVVRCLAPQKGQVFLDMTFGSGGHSRAILQKESDITLYALDRDPTAYAIAEQL 131

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              Y +Q       FSQ +  +   GV     DGV+ DLG SSMQ+D  +RGFS +K GP
Sbjct: 132 SDLYPKQIRAMLGQFSQAEALLTKAGVQPGTFDGVLLDLGCSSMQLDAPERGFSIRKDGP 191

Query: 133 LDMRMSCSGI----SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           LDMRM         +A+DVVN  + + L  IL   GEEK A +IA AIV+ R   P   T
Sbjct: 192 LDMRMDGGRYPDMPTAADVVNALDQQALASILRTYGEEKHAKKIASAIVQARSIYPITRT 251

Query: 189 QDLSSLIQ-----KTVYFSKN---NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           Q L+S++        +Y  K+      H AT++FQALRIFVNNE+ EL  GL++A+K L+
Sbjct: 252 QQLASIVAGAFPPSAIYARKDLLQRSTHIATKTFQALRIFVNNELNELYTGLKTAQKFLR 311

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKV---MAVRHMI---------PSNAH------- 281
            GG L+ +SFHSLEDR+VK+F    S      ++VR  +         P N         
Sbjct: 312 PGGRLVALSFHSLEDRIVKRFLLGISMTERFNLSVRQKVVQASQLSSGPENKEEVSAGRA 371

Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           P +++ I KKV+ P  +DV  N R RSAKLRA ++
Sbjct: 372 PLMWELINKKVLTPEDQDVQENPRGRSAKLRAAIK 406


>gi|187607601|ref|NP_001120214.1| methyltransferase like 15 [Xenopus (Silurana) tropicalis]
 gi|166796910|gb|AAI59379.1| LOC100145263 protein [Xenopus (Silurana) tropicalis]
          Length = 375

 Score =  230 bits (586), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 140/336 (41%), Positives = 188/336 (55%), Gaps = 36/336 (10%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVS 72
           HT+  HVPV++ +V   L P  G+ ILD TFGAGG++ S  K  SN  V+ALDRDP A +
Sbjct: 41  HTVL-HVPVMVNEVTECLAPQEGQTILDLTFGAGGHTTSILKRASNIKVLALDRDPAAFA 99

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSF 127
             Q+               FS+ +D +   GV     DGV+ D G SSMQ D  DRGFS 
Sbjct: 100 IAQQLAHSCGHNIQPLLGRFSESKDLLTSAGVEPGSIDGVLLDAGCSSMQFDTPDRGFSL 159

Query: 128 QKSGPLDMRMSCSGI----SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
            + GPLDMRM         +A+DVVN  + + L  IL   GEE+ A +IA AIV+ R   
Sbjct: 160 SRDGPLDMRMDGDRYPDMPTAADVVNALDQQALASILKTYGEERHAKKIASAIVQARSIY 219

Query: 184 PFQTTQDLSSLIQKTVYFSKNNRI----HPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
           P   TQ L+S++      ++ + +    H AT++FQALRIFVNNE+ EL  GL +AE  L
Sbjct: 220 PITRTQQLASIVTGASIQARTDLLQRPAHVATKTFQALRIFVNNELNELHAGLSTAETFL 279

Query: 240 KAGGLLIVVSFHSLEDRLVKKFF-------------------ASRSGKVMAVRHMIPSNA 280
           + GG L+V+SFHSLEDR+VK+F                      R+ K M     + S++
Sbjct: 280 RPGGRLVVISFHSLEDRIVKRFLHGIDMADKPNLAARHKIRQGQRNSKEMEDEEFLMSHS 339

Query: 281 HPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           +PA +  I KKV+ P  +DV  N R RSAKLRA ++
Sbjct: 340 NPA-WTVIQKKVLTPQYQDVLENPRGRSAKLRAAIK 374


>gi|288818267|ref|YP_003432615.1| S-adenosyl-methyltransferase [Hydrogenobacter thermophilus TK-6]
 gi|288787667|dbj|BAI69414.1| S-adenosyl-methyltransferase [Hydrogenobacter thermophilus TK-6]
 gi|308751864|gb|ADO45347.1| S-adenosyl-methyltransferase MraW [Hydrogenobacter thermophilus
           TK-6]
          Length = 287

 Score =  229 bits (585), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 131/303 (43%), Positives = 182/303 (60%), Gaps = 24/303 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H+PVLL++ + LL    G V +DAT G GG+++   +      VI +DRDP A+   +E 
Sbjct: 2   HIPVLLKESVDLLVWRTGGVYVDATVGLGGHTKGILERDPRAFVIGIDRDPHALKLAEEN 61

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++D++ +F L+QA F  L + +  +G   VDG +FDLGVS +Q+    RGFSFQ+  PLD
Sbjct: 62  LKDFEGRFCLYQANFRYLDEVLKQEGIKEVDGFLFDLGVSMLQLKS-PRGFSFQRDEPLD 120

Query: 135 MRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM+     +A  V+N  + +DL RIL   GEE  ASRIA AIV  R   P +TT +L S
Sbjct: 121 MRMNPEDKKTAYQVINTYSERDLVRILKEYGEEPNASRIARAIVMHRTKKPIETTGELVS 180

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           +I   + + +  R+HPATR FQA+RI VN E+  L + L    + LK GG L+V+SFHSL
Sbjct: 181 IITSLIPY-RRGRVHPATRIFQAIRIEVNEELISLEEALEKTPRFLKKGGRLVVISFHSL 239

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           EDR+VK FF                  H  +F+ +TKK + PT +++  N  SRSAKLRA
Sbjct: 240 EDRIVKNFFKR----------------HTDIFKLLTKKPIRPTLQEMKKNPASRSAKLRA 283

Query: 314 GMR 316
           G R
Sbjct: 284 GER 286


>gi|226355756|ref|YP_002785496.1| S-adenosyl-methyltransferase MraW [Deinococcus deserti VCD115]
 gi|263447379|sp|C1D1L8|RSMH_DEIDV RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|226317746|gb|ACO45742.1| putative Methyltransferase [Deinococcus deserti VCD115]
          Length = 300

 Score =  229 bits (584), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 134/309 (43%), Positives = 180/309 (58%), Gaps = 38/309 (12%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET-- 77
           H  VL  +V+  L P PGK I+D T G  G++R   + G++V  +D+DPFA+   +E   
Sbjct: 15  HTSVLSAEVLEALAPTPGKTIVDGTLGGAGHTRLLLEAGAHVYGIDQDPFALDRAREAGL 74

Query: 78  ------MRDYKEQFSLF-QATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
                   +Y++  SL  QA  SQ         VDG++ D+GVSS Q+D   RGFS+   
Sbjct: 75  PNLTVLQGNYRDMVSLLEQAGVSQ---------VDGILLDIGVSSFQLDDAGRGFSYHTE 125

Query: 131 GPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            PLDMRMS SG SA+DVVN    +DL  I+   GE++ + RIA AI + RQ AP +TT  
Sbjct: 126 APLDMRMSQSGESAADVVNTYEEEDLAAIIYEYGEDRLSRRIARAIGQARQKAPIETTVQ 185

Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ ++++    FSK   IHPA R+FQALRI VN+E+  L  GL++AE  L+ GG L V+S
Sbjct: 186 LAEIVKRAYPGFSKG--IHPARRTFQALRIHVNDELGALRDGLQAAETLLRPGGRLAVIS 243

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDR+VK+F                      V Q +TK+ VV + E+ A N RSRSA
Sbjct: 244 FHSLEDRIVKRFLLGSE-----------------VLQPLTKRPVVASDEEQAINPRSRSA 286

Query: 310 KLRAGMRTV 318
           KLRA  R V
Sbjct: 287 KLRAAERVV 295


>gi|157828717|ref|YP_001494959.1| S-adenosyl-methyltransferase MraW [Rickettsia rickettsii str.
           'Sheila Smith']
 gi|157801198|gb|ABV76451.1| S-adenosyl-methyltransferase MraW [Rickettsia rickettsii str.
           'Sheila Smith']
          Length = 299

 Score =  229 bits (584), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 127/301 (42%), Positives = 183/301 (60%), Gaps = 7/301 (2%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQETMRDYK 82
           +L +++  L+P  G+  LD TFGAGGYS++  +     V ALDRDP  +   +E  ++Y 
Sbjct: 1   MLNEMLEALSPKAGESYLDCTFGAGGYSKAILESCNCYVTALDRDPNVIKRAEEIQQNYG 60

Query: 83  EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI 142
           E+F   +  F+     + +K  DG+V DLGVSSMQ+D  DRGFSF   GPLDMRMS  G+
Sbjct: 61  ERFDFVETNFADSFAKLKEKKFDGIVLDLGVSSMQLDIADRGFSFLHDGPLDMRMSGQGL 120

Query: 143 SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS 202
           SA + VN A  K+L  ++   G+E  + RIA  IV+ R++A   +T  L+ +++ ++ F 
Sbjct: 121 SAEEFVNAAEEKELADVIYKYGDESFSRRIAKRIVEYRKTARIDSTGKLAEIVRSSIGFR 180

Query: 203 KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF 262
           K  +I PAT++FQA+RI+VN+E+ EL Q L + +  LK  G L+VVSFHSLEDR+VK FF
Sbjct: 181 K-GKIDPATKTFQAIRIYVNDELGELEQFLVNVKNILKKDGRLVVVSFHSLEDRIVKNFF 239

Query: 263 ASRSGKVMAVRHMIPSNAHP----AVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318
              S K + VR     +          + IT K + P+ ++V  N R+RSAKLRA     
Sbjct: 240 KENSEKPV-VRSKYAKDDMTIDPNKWLKIITNKALAPSDKEVGLNIRARSAKLRAAKAIY 298

Query: 319 E 319
           E
Sbjct: 299 E 299


>gi|313661472|ref|NP_001186351.1| putative S-adenosyl-L-methionine-dependent methyltransferase
           METT5D1 [Gallus gallus]
          Length = 409

 Score =  229 bits (583), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 137/335 (40%), Positives = 187/335 (55%), Gaps = 38/335 (11%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCGQET 77
           HVPV++E+V++ L+P  G+  LD TFGAGG+S +  +  SN+   ALDRDP A    Q+ 
Sbjct: 74  HVPVMMEEVVSCLSPQSGQCFLDMTFGAGGHSTALLEKASNITIYALDRDPTAYKIAQQL 133

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              Y +Q       FSQ +  +   GV     DGV+ D G SSMQ D  +RGFS QK GP
Sbjct: 134 SESYPKQIQALLGQFSQSEALLISSGVEPGTLDGVLLDAGCSSMQFDTPERGFSLQKDGP 193

Query: 133 LDMRMSCSGI----SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           LDMRM         +A+DVVN  + + L  IL   GEEK A +IA AIV+ R   P   T
Sbjct: 194 LDMRMDSDRYPDMPTAADVVNALDQQALASILRTYGEEKHAKKIASAIVQARSIYPITRT 253

Query: 189 QDLSSLIQ-----KTVYFSKN---NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           Q L+S++        +Y  K+      H AT++FQ LRIFVN+E+ EL  GL++AEK LK
Sbjct: 254 QQLASIVAGAFPASALYARKDLLQRPTHIATKTFQGLRIFVNDELHELFIGLKTAEKFLK 313

Query: 241 AGGLLIVVSFHSLEDRLVKKF-----------FASRSGKVMAVR--------HMIPSNAH 281
            GG L+ +SFHSLEDR++K+F             S+     A++        H  P    
Sbjct: 314 PGGRLVALSFHSLEDRIIKRFLHGIDMTEKYNLGSKQKIRQALKNCSKEEDTHEFPHGKS 373

Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
            + +  I KKV+ P  +D+  N R+RSAKLRA ++
Sbjct: 374 NSKWTFIQKKVLTPQAKDILTNPRARSAKLRAAVK 408


>gi|149022854|gb|EDL79748.1| similar to RIKEN cDNA 0610027B03, isoform CRA_a [Rattus norvegicus]
 gi|149022855|gb|EDL79749.1| similar to RIKEN cDNA 0610027B03, isoform CRA_a [Rattus norvegicus]
          Length = 406

 Score =  228 bits (581), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 135/334 (40%), Positives = 189/334 (56%), Gaps = 37/334 (11%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCGQET 77
           H+PV++++V+  L P  G+V LD TFG+GG+S++  +   +V   ALDRDP A +  +  
Sbjct: 72  HIPVMVDEVVQCLTPQKGQVFLDMTFGSGGHSKAILQKEPDVTVYALDRDPVAFTLAERL 131

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              Y  Q       FSQ +  +   GV     DGV+ DLG SSMQ+D  +RGFS +K GP
Sbjct: 132 SEMYPTQIHAMLGQFSQAETLLMKAGVQPGTVDGVLLDLGCSSMQLDAPERGFSLRKDGP 191

Query: 133 LDMRMSCSGI----SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           LDMRM         +A+DVVN  + + L  IL   GEEK A +IA AI++ R + P   T
Sbjct: 192 LDMRMDGDRYPDMPTAADVVNALDQQALASILRAYGEEKHAKKIASAIIQARSTYPISRT 251

Query: 189 QDLSSLIQ-----KTVYFSKN---NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           Q L+S++        +Y  K+      H AT++FQALRIFVNNE+ EL  GLR+A+K LK
Sbjct: 252 QQLASIVAGAFPPSAIYARKDLLQRSTHIATKTFQALRIFVNNELNELYTGLRTAQKFLK 311

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKV---MAVRHMIPSNAH---------------P 282
            GG L+ +SFHSLEDR+VK+F    S      +++R  +   +                P
Sbjct: 312 PGGRLVALSFHSLEDRIVKRFLLGISMTERFNLSIRQKVRQTSQMDSDHEIEERRCVRAP 371

Query: 283 AVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
             ++ I KKV+ P  +DV  N R RSAKLRA ++
Sbjct: 372 LKWELIHKKVLTPEDQDVQANPRGRSAKLRAAIK 405


>gi|149910619|ref|ZP_01899257.1| S-adenosyl-methyltransferase [Moritella sp. PE36]
 gi|149806347|gb|EDM66322.1| S-adenosyl-methyltransferase [Moritella sp. PE36]
          Length = 313

 Score =  228 bits (581), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 129/303 (42%), Positives = 189/303 (62%), Gaps = 11/303 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQE 76
           HV VLL + +A L+  P  + +D TFG GG+SR    ++G N  +IA+DRDP A++ G E
Sbjct: 7   HVSVLLNETVAGLDLKPDGIYIDGTFGRGGHSRFILSQLGENGRLIAIDRDPEAIAVG-E 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            ++    +F +    FS + DY+ +KG    +DGV+ DLGVSS Q+D   RGFSF + GP
Sbjct: 66  ALKLEDPRFDIVHGPFSGIADYMENKGLTGHIDGVLLDLGVSSPQLDDASRGFSFLRDGP 125

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM   SGISA+  +  A+  D+  +L + GEE+ A +IA A+V  R   PF+TT  L
Sbjct: 126 LDMRMDPTSGISAAKWLATADYDDIVWVLKVFGEERFARKIARAVVFDRDDKPFETTSQL 185

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           +SLI + V  SK    HPATRSFQA+RI++N+E+EE+ + L  A + LK+GG L V+SFH
Sbjct: 186 ASLICRVVPKSKKETKHPATRSFQAIRIYINSELEEIERALAGALQCLKSGGRLSVISFH 245

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK+F    +R  +V     ++              K++ P+++++  N R+RS+
Sbjct: 246 SLEDRIVKQFIRKQARGKEVPYGLPIMQEEIDKTRTMKAIGKMLKPSEDELELNPRARSS 305

Query: 310 KLR 312
            LR
Sbjct: 306 VLR 308


>gi|46199019|ref|YP_004686.1| mraW protein [Thermus thermophilus HB27]
 gi|85701363|sp|P62476|RSMH_THET2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|46196643|gb|AAS81059.1| mraW protein [Thermus thermophilus HB27]
          Length = 285

 Score =  228 bits (581), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 127/297 (42%), Positives = 179/297 (60%), Gaps = 26/297 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           HVPVL ++ + LL   PG V +DAT G  G++R   + G  VI LD+DP AV+  +    
Sbjct: 6   HVPVLYQEALDLLAVRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKGL-- 63

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
            +    ++ Q  F  L+ ++   GV   DG++ DLGVSS  +D   RGFS+QK GPLDMR
Sbjct: 64  -HLPGLTVVQGNFRHLKRHLAALGVERVDGILADLGVSSFHLDDPSRGFSYQKEGPLDMR 122

Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
           M   G +A +VVN+  ++ L R+L  LGEE QA RIA AIV  R+ AP +TT  L+ +++
Sbjct: 123 MGLEGPTAKEVVNRLPLEALARLLRELGEEPQAYRIARAIVAAREKAPIETTTQLAEIVR 182

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
           K V F +    HPA ++FQALRI+VN+E+  L + L  A + L   G L+V++FHSLEDR
Sbjct: 183 KAVGFRRAG--HPARKTFQALRIYVNDELNALKEFLEQAAEVLAPRGRLVVIAFHSLEDR 240

Query: 257 LVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           +VK+F      KV+                  TKK +VP++++ A N R+RSAKLRA
Sbjct: 241 VVKRFLRESGLKVL------------------TKKPLVPSEKEAAQNPRARSAKLRA 279


>gi|312794111|ref|YP_004027034.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312181251|gb|ADQ41421.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 307

 Score =  228 bits (580), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 126/307 (41%), Positives = 195/307 (63%), Gaps = 10/307 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
           +H+PVLLE+ ++ L   P  + +DATFG GG+S+   +  SN   ++A+D+D  A+  G+
Sbjct: 3   EHIPVLLEESVSFLITNPDGIYVDATFGLGGHSKRILEKLSNKGFLVAIDKDLEAIELGK 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +  YK    +  ++FS++ + +   G+   DG++FD GVSS+Q+D  +RGFS+ K   
Sbjct: 63  RRLEGYK-NIKIVHSSFSKVDEVLESLGIEKIDGILFDFGVSSLQLDKQERGFSYSKEAF 121

Query: 133 LDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM + S ++A DV+N  + +DL RI+   GEE+ A RIA AIV+RR++ P +TT +L
Sbjct: 122 LDMRMDTTSKLTAYDVINFYSQEDLERIIREYGEERFARRIAKAIVERRRNKPIETTTEL 181

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           SSLI   V   K+   HPA R+FQA+RI VN E+EE+   L  + + LK+GG +  +SFH
Sbjct: 182 SSLISSVVPKPKDGS-HPAQRTFQAIRIEVNRELEEIKIALEKSLRFLKSGGRICAISFH 240

Query: 252 SLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK+FF   S + +  + + +         + ITKK +VP++E++  N+RS SAK
Sbjct: 241 SLEDRIVKEFFKFHSLECICPKDIPVCRCGKKKELEIITKKPIVPSKEEIERNKRSHSAK 300

Query: 311 LRAGMRT 317
           LR   + 
Sbjct: 301 LRVAQKV 307


>gi|312128123|ref|YP_003992997.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311778142|gb|ADQ07628.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 307

 Score =  228 bits (580), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 129/307 (42%), Positives = 192/307 (62%), Gaps = 10/307 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
           +H+PVLLE+ ++ L   P  + +DATFG GG+S+   +  SN   ++A+D+D  A+  G+
Sbjct: 3   EHIPVLLEESVSFLITNPDGIYVDATFGLGGHSKRILEKLSNKGFLVAIDKDLEAIELGK 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +  YK    +  ++FS++ + +   G+   DG++FD GVSS+Q+D  +RGFS+ K   
Sbjct: 63  RRLEAYK-NIKIVHSSFSKVDEVLESLGIAKIDGILFDFGVSSLQLDKQERGFSYSKEAF 121

Query: 133 LDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM + S ++A DVVN  + +DL RI+   GEE+ A RIA AIV+RR   P +TT DL
Sbjct: 122 LDMRMDTTSKLTAYDVVNFYSQEDLERIIREYGEERFARRIAKAIVERRSKKPIETTTDL 181

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           SSLI   V   K+   HPA R+FQA+RI VN E+EE+   L  +   LK+GG +  +SFH
Sbjct: 182 SSLISSLVPKPKDGS-HPAQRTFQAIRIEVNRELEEIKVALEKSLGFLKSGGRICAISFH 240

Query: 252 SLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK+FF   S + +  + + +         + ITKK +VP++E++  NRRS SAK
Sbjct: 241 SLEDRIVKEFFKFHSLECICPKDIPVCRCGKKKQLEIITKKPIVPSKEEIERNRRSHSAK 300

Query: 311 LRAGMRT 317
           LR   + 
Sbjct: 301 LRVAQKV 307


>gi|224050409|ref|XP_002191093.1| PREDICTED: similar to methyltransferase 5 domain containing 1
           [Taeniopygia guttata]
          Length = 443

 Score =  228 bits (580), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 135/335 (40%), Positives = 190/335 (56%), Gaps = 38/335 (11%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H+PV+LE+V+  L+P PG+  LD TFGAGG++ +  +  S+  V ALDRDP A    Q+ 
Sbjct: 108 HIPVMLEEVVNCLSPQPGQRFLDMTFGAGGHTAALLERASDISVYALDRDPTAHRMAQQL 167

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            + Y +Q       FSQ +  +   GV     DGV+ D G SSMQ+D  +RGFS QK GP
Sbjct: 168 AQAYPKQLQPLLGRFSQSEALLISSGVEPGSLDGVLLDAGCSSMQLDTPERGFSLQKDGP 227

Query: 133 LDMRMS---CSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           LDMRM    C  + +A+DVVN  + + L  +L   GEE+ A RIA AIV+ R   P   T
Sbjct: 228 LDMRMDHDRCPAMATAADVVNALDQRALASVLSAYGEERHARRIAAAIVQARSIYPITRT 287

Query: 189 QDLSSLIQ-----KTVYFSKN---NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           + L+S++        +Y  K+     +H AT++FQ LRIFVN+E+ EL  GL++AEK L+
Sbjct: 288 RQLASIVAGAFPASALYARKDLLQRPVHVATKTFQGLRIFVNDELHELLIGLKTAEKFLR 347

Query: 241 AGGLLIVVSFHSLEDRLVKKFFAS-------RSGKVMAVRHMI------------PSNAH 281
            GG L+ +SFHSLEDR++K+F            G    +R  +            P    
Sbjct: 348 PGGRLVALSFHSLEDRIIKRFLHGIDITEKYNLGSKQKIRQALKNASKGEDTQGSPCGKS 407

Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
            + + SI KKV+ P  +D+  N R RSAKLRA ++
Sbjct: 408 NSKWISIQKKVLTPQAKDIQINPRGRSAKLRAAIK 442


>gi|171913327|ref|ZP_02928797.1| S-adenosyl-methyltransferase MraW [Verrucomicrobium spinosum DSM
           4136]
          Length = 331

 Score =  228 bits (580), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 132/300 (44%), Positives = 178/300 (59%), Gaps = 9/300 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+PVL  +V+A L PAPGKVILD T G GG++    + G+ VI LD+D  A+S   E ++
Sbjct: 27  HLPVLPAEVVAALAPAPGKVILDGTLGGGGHTSLLLQAGAEVIGLDQDTDALSHAGERLK 86

Query: 80  DYKE--QFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
            Y    QF   Q+ F      +   G+   DG++ DLGVSS Q+D   RGFSF   GPLD
Sbjct: 87  AYAATGQFRSVQSNFRDFPAVLQALGITALDGLLVDLGVSSYQLDVASRGFSFMHEGPLD 146

Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM+  G  +A+D+VN+    +L RIL   GEE+Q+ RI  A+V+RR+  PF TT DL+S
Sbjct: 147 MRMNTGGGRTAADLVNEDEPAELERILWEYGEERQSRRIVRALVQRREQRPFTTTSDLAS 206

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
            I   +   +  + HPAT +FQ LRI VN+E+  LA  L +A   LK GG L V+SFHSL
Sbjct: 207 AIAGVI--PRRGKTHPATLTFQGLRIAVNDELAALADFLHAAPAWLKPGGRLAVISFHSL 264

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPA-VFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           EDR+VK+ F   S + +          +P    + + +K    T E+V  N RSRSAKLR
Sbjct: 265 EDRMVKQAFQRLSTEWLDRPEWPEPRRNPEHCLRLLHRKPQEATDEEVKRNPRSRSAKLR 324


>gi|294012787|ref|YP_003546247.1| S-adenosyl-methyltransferase [Sphingobium japonicum UT26S]
 gi|292676117|dbj|BAI97635.1| S-adenosyl-methyltransferase [Sphingobium japonicum UT26S]
          Length = 326

 Score =  227 bits (579), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 134/302 (44%), Positives = 194/302 (64%), Gaps = 9/302 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+PVL+++V+  L   PG+V +D TFGAGGYS +    G+ V A DRDP A+  GQ    
Sbjct: 14  HIPVLIDEVLDALAINPGEVHVDGTFGAGGYSGAMADRGARVFAFDRDPDAIREGQALAE 73

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
           +  +  +L    FS++++ + ++GV    GV  D+GVSSMQ+D  +RGFSFQ  GPLDM 
Sbjct: 74  E--KGVTLIAGEFSRMEELLAERGVTSVSGVTLDIGVSSMQLDRPERGFSFQGDGPLDMT 131

Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
           MS SG+SA+D +N A  +++  IL   GEE ++ R+A AIV+ R   P + T  L+++++
Sbjct: 132 MSRSGMSAADFLNNAPEQEIADILYRYGEEPRSRRVAKAIVEAR---PLERTGQLANVVR 188

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
           K +    +++  PATR+FQA+RI VN E+EEL +GL +AE  L+ GG L VV+FHSLEDR
Sbjct: 189 KALGHKPHDKKDPATRTFQAIRIHVNRELEELERGLEAAEAILEEGGRLAVVTFHSLEDR 248

Query: 257 LVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           +VK+F  +RSG +    RH+    + PA       K V P   ++A N RSRSA LR+ +
Sbjct: 249 IVKQFLRNRSGSEASGSRHLPQRQSGPAPTFERPAKAVRPGMVELARNPRSRSATLRSAV 308

Query: 316 RT 317
           RT
Sbjct: 309 RT 310


>gi|51473750|ref|YP_067507.1| S-adenosyl-methyltransferase MraW [Rickettsia typhi str.
           Wilmington]
 gi|116241372|sp|Q68WG7|RSMH_RICTY RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|51460062|gb|AAU04025.1| S-adenosyl-methyltransferase MraW [Rickettsia typhi str.
           Wilmington]
          Length = 306

 Score =  226 bits (577), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 123/304 (40%), Positives = 188/304 (61%), Gaps = 7/304 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQETM 78
           H+PV+L +V+ +L P   +  LD TFGAGGYS +  K    +V +LD DP  +   ++  
Sbjct: 5   HIPVMLSEVLEVLAPKGYESYLDCTFGAGGYSNAILKSCYCSVTSLDCDPHVIERVEQIK 64

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138
           +DY E+FS  +  F+     +  +  DG+V DLGVSSMQ+D   RGFSF   GPLDMRMS
Sbjct: 65  QDYGERFSFIKTNFADSFGKLKQQKFDGIVMDLGVSSMQLDIAGRGFSFLYDGPLDMRMS 124

Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198
             G SA + VN A+ ++++ ++   G E  + RIA  I+K R+ A   +T+ L+ +++ +
Sbjct: 125 AQGFSAEEFVNTADEEEISDVIYKYGNESLSRRIAKNIIKYRKIARIDSTRKLAEIVRYS 184

Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258
           + F K  +I  AT++FQA+RI++NNE+ EL + L + +  LK  G L+VVSFHSLEDR+V
Sbjct: 185 IGFRK-GKIDSATKTFQAIRIYINNELGELERFLANVKNILKKNGRLVVVSFHSLEDRIV 243

Query: 259 KKFFASRSGKVMA----VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           K FF   S K +A     +  I  + +  + + IT KV+ P+ +++  N R+RSAKLRA 
Sbjct: 244 KNFFKENSAKPVARSKYAKDEIKIDQNKWL-EIITHKVLTPSSQEIRLNVRARSAKLRAA 302

Query: 315 MRTV 318
            + +
Sbjct: 303 KKIL 306


>gi|312622933|ref|YP_004024546.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203400|gb|ADQ46727.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 307

 Score =  226 bits (576), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 128/307 (41%), Positives = 190/307 (61%), Gaps = 10/307 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
           +H+PVLLE+ ++ L   P  + +DATFG GG+S+   +  SN   +IA+DRD  A+  G+
Sbjct: 3   EHIPVLLEESVSFLITNPDGIYVDATFGLGGHSKRILEKISNKGFLIAIDRDLEAIELGK 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +  YK    +  ++FS++ + +   G+   DG++FD GVSS+Q+D  +RGFS+ K   
Sbjct: 63  RKLEAYK-NVKIVHSSFSKVDEVLECLGIEKIDGILFDFGVSSLQLDKQERGFSYNKEAF 121

Query: 133 LDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM + S ++A DVVN  + +DL RI+   GEE+ A RIA AIV+RR   P +TT DL
Sbjct: 122 LDMRMDTTSKLTAYDVVNYYSQEDLERIIREYGEERFARRIAKAIVERRSKKPIETTTDL 181

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           S LI   V   K+   HPA R+FQA+RI VN E+EE+   L  + + LK+GG +  +SFH
Sbjct: 182 SRLISSVVPKPKDGS-HPAQRTFQAIRIEVNRELEEIKIALEKSLRFLKSGGRICAISFH 240

Query: 252 SLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK+FF   S + +  + + +           ITKK + P++E++  N+RS SAK
Sbjct: 241 SLEDRIVKEFFKFHSLECICPKDIPVCRCGKKKELNIITKKPITPSKEEIESNKRSHSAK 300

Query: 311 LRAGMRT 317
           LR   + 
Sbjct: 301 LRVAEKV 307


>gi|312876343|ref|ZP_07736328.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796837|gb|EFR13181.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 307

 Score =  226 bits (576), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 126/307 (41%), Positives = 194/307 (63%), Gaps = 10/307 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
           +H+PVLLE+ ++ L   P  + +DATFG GG+S+   +  SN   ++A+D+D  A+  G+
Sbjct: 3   EHIPVLLEESVSFLITNPDGIYVDATFGLGGHSKRILEKLSNKGFLVAIDKDLEAIELGK 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +  YK    +  ++FS++ + +   G+   DG++FD GVSS+Q+D  +RGFS+ K   
Sbjct: 63  RRLEGYK-NIKIVHSSFSKVDEVLESLGIEKIDGILFDFGVSSLQLDKQERGFSYSKEAF 121

Query: 133 LDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM + S ++A DV+N  + +DL RI+   GEE+ A RIA AIV+RR++ P +TT +L
Sbjct: 122 LDMRMDTTSKLTAYDVINFYSQEDLERIIREYGEERFARRIAKAIVERRRNKPIETTTEL 181

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           SSLI   V   K+   HPA R+FQA+RI VN E+EE+   L  + + LK+GG +  +SFH
Sbjct: 182 SSLISSVVPKPKDGS-HPAQRTFQAIRIEVNRELEEIKIALEKSLRFLKSGGRICAISFH 240

Query: 252 SLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK FF   S + +  + + +         + ITKK +VP++E++  N+RS SAK
Sbjct: 241 SLEDRIVKGFFKFHSLECICPKDIPVCRCGKKKELEIITKKPIVPSKEEIERNKRSHSAK 300

Query: 311 LRAGMRT 317
           LR   + 
Sbjct: 301 LRVAQKV 307


>gi|148284404|ref|YP_001248494.1| S-adenosyl-methyltransferase MraW [Orientia tsutsugamushi str.
           Boryong]
 gi|262824724|sp|A5CD85|RSMH_ORITB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|146739843|emb|CAM79768.1| S-adenosyl-methyltransferase [Orientia tsutsugamushi str. Boryong]
          Length = 312

 Score =  226 bits (576), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 123/310 (39%), Positives = 183/310 (59%), Gaps = 12/310 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76
           H PV+  ++++ L P   +  LD TFG GGYS+   S C     +IA DRDP  +S   +
Sbjct: 5   HTPVMATEMLSYLAPVDNETYLDCTFGTGGYSKLILSNC--NCKIIAFDRDPAVISIASQ 62

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
             + Y  +F+ F   F +   Y+     ++G+V DLGVSSMQ+D  +RGFSF+    LDM
Sbjct: 63  FYQQYSNRFTFFNDNFVEANKYLSKSAKLNGIVMDLGVSSMQLDAANRGFSFRYDAELDM 122

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RMS  G  AS++VN+A+   L  I+   GEE +A++IA  IV  R+  P  TT  L+++I
Sbjct: 123 RMSQKGYKASELVNEASEHQLADIIYKFGEENKANKIAKHIVLAREKKPITTTLQLANII 182

Query: 196 QKTVYFS---KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           ++ V ++   K N+I  AT++FQA+RIF+N+E+  +   L  + + L   G LIVVSFH+
Sbjct: 183 REAVGYNNYYKKNKIDSATKTFQAIRIFINDELSAIQNFLNQSLELLAVNGRLIVVSFHA 242

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHP---AVFQSITKKVVVPTQEDVAFNRRSRSA 309
           LED +VKKF    + K +A      +   P    V   +TKK+ VPT+ ++  N RSRSA
Sbjct: 243 LEDAIVKKFMHQNAVKKVAQSKYSTNKQLPLQNGVLHLLTKKIAVPTRTEIINNPRSRSA 302

Query: 310 KLRAGMRTVE 319
           +LRA ++  E
Sbjct: 303 RLRAALKINE 312


>gi|165377209|ref|NP_001107000.1| probable methyltransferase-like protein 15 isoform 1 [Homo sapiens]
 gi|160012249|sp|A6NJ78|MET15_HUMAN RecName: Full=Probable methyltransferase-like protein 15; AltName:
           Full=Methyltransferase 5 domain-containing protein 1
 gi|119588672|gb|EAW68266.1| methyltransferase 5 domain containing 1, isoform CRA_a [Homo
           sapiens]
          Length = 407

 Score =  226 bits (576), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 133/335 (39%), Positives = 193/335 (57%), Gaps = 38/335 (11%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCGQET 77
           H+PV++++V+  L+P  G++ LD TFG+GG++++  +  S+++  ALDRDP A +  +  
Sbjct: 72  HIPVMVDEVVHCLSPQKGQIFLDMTFGSGGHTKAILQKESDIVLYALDRDPTAYALAEHL 131

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              Y +Q       FSQ +  +   GV     DGV+ DLG SSMQ+D  +RGFS +K GP
Sbjct: 132 SELYPKQIRAMLGQFSQAEALLMKAGVQPGTFDGVLMDLGCSSMQLDTPERGFSLRKDGP 191

Query: 133 LDMRMSCSGI----SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           LDMRM         +A+DVVN  + + L  IL   GEEK A +IA AIV+ R   P   T
Sbjct: 192 LDMRMDGGRYPDMPTAADVVNALDQQALASILRTYGEEKHAKKIASAIVQARSIYPITRT 251

Query: 189 QDLSSLIQ-----KTVYFSKN---NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           Q L+S++        +Y  K+      H AT++FQALRIFVNNE+ EL  GL++A+K L+
Sbjct: 252 QQLASIVAGAFPPSAIYTRKDLLQRSTHIATKTFQALRIFVNNELNELYTGLKTAQKFLR 311

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKV---MAVRHMIPSNAH---------------- 281
            GG L+ +SFHSLEDR+VK+F    S      ++VR  +   +                 
Sbjct: 312 PGGRLVALSFHSLEDRIVKRFLLGISMTERFNLSVRQQVMKTSQLGSDHENTEEVSMRRA 371

Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           P +++ I KKV+ P  +DV  N R RSAKLRA ++
Sbjct: 372 PLMWELIHKKVLSPQDQDVQDNPRGRSAKLRAAIK 406


>gi|326919741|ref|XP_003206136.1| PREDICTED: probable S-adenosyl-L-methionine-dependent
           methyltransferase METT5D1-like [Meleagris gallopavo]
          Length = 410

 Score =  225 bits (574), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 137/335 (40%), Positives = 186/335 (55%), Gaps = 38/335 (11%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCGQET 77
           H+PV++E+VI  L+P  G+  LD TFGAGG+S +  +  SN+   ALDRDP A    Q+ 
Sbjct: 75  HIPVMVEEVINCLSPQSGQRFLDMTFGAGGHSTALLEKASNITIYALDRDPTAYKIAQQL 134

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              Y +Q       FSQ +  +   GV     DGV+ D G SSMQ D  +RGFS QK GP
Sbjct: 135 SESYPKQIQALLGQFSQSEALLISSGVEPGTLDGVLLDAGCSSMQFDTPERGFSLQKDGP 194

Query: 133 LDMRMSCSGI----SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           LDMRM         +A+DVVN  + + L  IL   GEEK A +IA AIV+ R   P   T
Sbjct: 195 LDMRMDSDRYPDMPTAADVVNALDQQALASILRTYGEEKHAKKIASAIVQARSIYPITRT 254

Query: 189 QDLSSLIQ-----KTVYFSKN---NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           Q L+S++        +Y  K+      H AT++FQ LRIFVN+E+ EL  GL++AEK LK
Sbjct: 255 QQLASIVAGAFPASALYARKDLLQRPTHVATKTFQGLRIFVNDELHELLIGLKTAEKFLK 314

Query: 241 AGGLLIVVSFHSLEDRLVKKF-----------FASRSGKVMAVRHM--------IPSNAH 281
            GG L+ +SFHSLEDR++K+F             SR     A+++          P    
Sbjct: 315 PGGRLVALSFHSLEDRIIKRFLHGIDMTEKYNLGSRQKIRRALKNCSKEENTQEFPHGKS 374

Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
            + +  I KKV+ P  +D+  N R+RSAKLRA ++
Sbjct: 375 NSKWTFIQKKVLTPQAKDILTNPRARSAKLRAAVK 409


>gi|189184784|ref|YP_001938569.1| S-adenosyl-methyltransferase MraW [Orientia tsutsugamushi str.
           Ikeda]
 gi|262824728|sp|B3CVD8|RSMH_ORITI RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|189181555|dbj|BAG41335.1| S-adenosyl-methyltransferase MraW [Orientia tsutsugamushi str.
           Ikeda]
          Length = 312

 Score =  225 bits (573), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 127/311 (40%), Positives = 185/311 (59%), Gaps = 14/311 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76
           H PVL  ++++ L P   +  LD TFGAGGYS+   S C     VIA DRDP  +S   +
Sbjct: 5   HTPVLATEMLSYLAPVDNETYLDCTFGAGGYSKLILSNC--NCKVIAFDRDPAVISIASQ 62

Query: 77  TMRDYKEQFSLFQATFSQLQDYVP--DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
             + Y  +F+ F   F +   Y+   DK ++G+V DLGVSSMQ+D  +RGFSF+    LD
Sbjct: 63  FYQQYPNRFTFFNENFVEANKYLSKLDK-LNGIVMDLGVSSMQLDEANRGFSFRYDAELD 121

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRMS  G  AS+ VN+A+   L  I+   GEE +A++IA  IV  R+  P  TT  L+++
Sbjct: 122 MRMSQKGYKASEFVNEASEHQLADIIYKFGEENKANKIAKHIVLARKKKPITTTLQLANI 181

Query: 195 IQKTVYFS---KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           I++ V ++   K N+I  AT++FQA+RIF+N+E+  +   L  + + L   G LIVVSFH
Sbjct: 182 IREAVGYNNYYKKNKIDSATKTFQAIRIFINDELSAIQNFLNQSLELLAVNGRLIVVSFH 241

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHP---AVFQSITKKVVVPTQEDVAFNRRSRS 308
           +LED ++KKF    + K +A      +   P    V   +TKK+ VPT+ ++  N RSRS
Sbjct: 242 ALEDAIIKKFMHQNAVKKVAQSKYSTNRQSPLQNGVLYLLTKKIAVPTRTEIINNPRSRS 301

Query: 309 AKLRAGMRTVE 319
           A+LRA ++  E
Sbjct: 302 ARLRAALKINE 312


>gi|311248051|ref|XP_003122950.1| PREDICTED: probable S-adenosyl-L-methionine-dependent
           methyltransferase METT5D1-like [Sus scrofa]
          Length = 405

 Score =  225 bits (573), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 131/335 (39%), Positives = 190/335 (56%), Gaps = 38/335 (11%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCGQET 77
           H+PV++++V+  L P  G+  LD TFG+GG++++  +  S++I  ALDRDP A +  ++ 
Sbjct: 70  HIPVMVDEVVHCLAPQKGQFFLDMTFGSGGHTKAILQKESDIILYALDRDPTAYAIAEQL 129

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              Y +Q       FSQ +  +   GV     DGV+ DLG SSMQ+D  +RGFS +K GP
Sbjct: 130 SEVYPKQIRALLGQFSQAEALLMKAGVQPGTLDGVLLDLGCSSMQLDSPERGFSLRKDGP 189

Query: 133 LDMRMSCSGI----SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           LDMRM         +A+DVVN  +   L  IL   GEEK A +IA AIV+ R   P   T
Sbjct: 190 LDMRMDGGRYPDMPTAADVVNALDQHALASILRAYGEEKHAKKIASAIVQARSIYPITRT 249

Query: 189 QDLSSLIQ-----KTVYFSKN---NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           Q L+S++        +Y  K+      H AT++FQA RIFVNNE+ EL  GL++A+K L+
Sbjct: 250 QQLASIVAGAFPPSAIYARKDLLQRSTHIATKTFQAFRIFVNNELNELYTGLKTAQKFLR 309

Query: 241 AGGLLIVVSFHSLEDRLVKKFF-------------------ASRSGKVMAVRHMIPSNAH 281
            GG L+ +SFHSLEDR++K+F                     S+ G  +  +  I +   
Sbjct: 310 PGGRLVALSFHSLEDRIIKRFLLGISMTERFNLSARQKVIQKSQLGSSLENKEGISTGKA 369

Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           P +++ + KKV+ P  +DV  N R RSAKLRA ++
Sbjct: 370 PLMWKLLHKKVLTPEDQDVQDNPRGRSAKLRAAIK 404


>gi|256390851|ref|YP_003112415.1| S-adenosyl-methyltransferase MraW [Catenulispora acidiphila DSM
           44928]
 gi|256357077|gb|ACU70574.1| S-adenosyl-methyltransferase MraW [Catenulispora acidiphila DSM
           44928]
          Length = 316

 Score =  225 bits (573), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 132/315 (41%), Positives = 185/315 (58%), Gaps = 12/315 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFA 70
           T   H+PV+LE+ + +L PA   PG V+LDAT G GG+S +F +   +V  I LDRDP A
Sbjct: 2   TSATHIPVMLERCVEILGPALERPGAVVLDATLGLGGHSEAFLRRFPDVRLIGLDRDPQA 61

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSF 127
           +      +  + E+ +L  A + ++ D +   GV    G +FDLGVSS+Q+D  +RGF++
Sbjct: 62  LEASGRRLAPFGERATLVHAVYDEIPDVLERLGVAELSGTLFDLGVSSLQLDMRERGFAY 121

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
               PLDMRM  S GI+A+D+VN     D+ RIL   GEE+ A RIA  IV  R+  PF 
Sbjct: 122 SYDAPLDMRMDSSRGITAADIVNTYPAADIARILRDYGEERFARRIADRIVAEREKEPFT 181

Query: 187 TTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           TT  LS L++ ++   ++    HPA R+FQALRI VN+E+  L + L +A  A   GG +
Sbjct: 182 TTARLSDLVRDSIPAATRRTGGHPAKRAFQALRIAVNDELPVLERALPAAVAATGLGGRI 241

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
            V+S+HSLEDRLVK+ FA  S         ++P    P  F+ +T+    PT  + A N 
Sbjct: 242 AVLSYHSLEDRLVKRVFAKASESAAPPGLPVVPEQYQPK-FRLLTRGAEPPTDAETAENP 300

Query: 305 RSRSAKLRAGMRTVE 319
           R+ SAKLRA  R  E
Sbjct: 301 RAASAKLRAAERVRE 315


>gi|332836127|ref|XP_003313021.1| PREDICTED: methyltransferase like 15 isoform 1 [Pan troglodytes]
          Length = 407

 Score =  225 bits (573), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 133/335 (39%), Positives = 192/335 (57%), Gaps = 38/335 (11%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCGQET 77
           H+PV++++V+  L+P  G++ LD TFG+GG++++  +  S+++  ALDRDP A +  +  
Sbjct: 72  HIPVMVDEVVHCLSPQKGQIFLDMTFGSGGHTKAILQKESDIVLYALDRDPTAYALAEHL 131

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              Y +Q       FSQ +  +   GV     DGV+ DLG SSMQ+D  +RGFS +K GP
Sbjct: 132 SELYPKQIRAMLGQFSQAEALLMKAGVQPGTFDGVLMDLGCSSMQLDTPERGFSLRKDGP 191

Query: 133 LDMRMSCSGI----SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           LDMRM         +A+DVVN  + + L  IL   GEEK A +IA AIV+ R   P   T
Sbjct: 192 LDMRMDGGRYPDMPTAADVVNALDQQALASILRTYGEEKHAKKIASAIVQARSIYPITRT 251

Query: 189 QDLSSLIQ-----KTVYFSKN---NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           Q L+ ++        VY  K+      H AT++FQALRIFVNNE+ EL  GL++A+K L+
Sbjct: 252 QQLAGIVAGAFPPSAVYTRKDLLQRSTHIATKTFQALRIFVNNELNELYTGLKTAQKFLR 311

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKV---MAVRHMIPSNAH---------------- 281
            GG L+ +SFHSLEDR+VK+F    S      ++VR  +   +                 
Sbjct: 312 PGGRLVALSFHSLEDRIVKRFLLGISMTERFNLSVRQQVMKTSQLGSDHENTEEVSMRRA 371

Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           P +++ I KKV+ P  +DV  N R RSAKLRA ++
Sbjct: 372 PLMWELIHKKVLSPQDQDVQDNPRGRSAKLRAAIK 406


>gi|90423689|ref|YP_532059.1| methyltransferase [Rhodopseudomonas palustris BisB18]
 gi|123275305|sp|Q216E6|RSMH_RHOPB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|90105703|gb|ABD87740.1| methyltransferase [Rhodopseudomonas palustris BisB18]
          Length = 330

 Score =  225 bits (573), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 143/326 (43%), Positives = 197/326 (60%), Gaps = 8/326 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQETM 78
           H+PVL ++ + LL P  G V +DATFGAGGYS        + VI +DRD  A++ G + +
Sbjct: 7   HIPVLGQEAVGLLAPRDGGVYVDATFGAGGYSGLILAAADTRVIGIDRDRTAIAGGFDLV 66

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
                + +L +  FS L +    +G     GVV D+GVSSMQ+D  +RGFSF+ +GPLDM
Sbjct: 67  ERSGGRLTLVEDRFSNLAEVCAAQGAGLVDGVVMDVGVSSMQLDQSERGFSFRLAGPLDM 126

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RM  SG SA+DV+  A+  +L  I+ I GEE+ +  +A AIV  R   P  TT+ L+ ++
Sbjct: 127 RMGQSGPSAADVIAVASEAELANIIYIFGEERHSRAVARAIVAARAIEPITTTRALADIV 186

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
            K V+ +K   IHPATR+FQ LRIFVN E++EL   L +AE+ LK GG L+VVSFHSLED
Sbjct: 187 GKVVH-AKPGEIHPATRTFQGLRIFVNGELDELHLALSAAERVLKPGGRLVVVSFHSLED 245

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           R+VK FF +R       RH+   +     F  +TK+ +    +++A N R+RSAKLRAG 
Sbjct: 246 RIVKNFFNARGKTGGGSRHLPELDQEAPSFAILTKRPITAGPDELAGNPRARSAKLRAGE 305

Query: 316 RTVERSIEDDSFVHLPRLPTLSQFRG 341
           RT   +   +    LP  PTL    G
Sbjct: 306 RTAALAHPGED---LPAWPTLDAVMG 328


>gi|197101179|ref|NP_001126687.1| probable methyltransferase-like protein 15 [Pongo abelii]
 gi|75054772|sp|Q5R5T5|MET15_PONAB RecName: Full=Probable methyltransferase-like protein 15; AltName:
           Full=Methyltransferase 5 domain-containing protein 1
 gi|55732357|emb|CAH92881.1| hypothetical protein [Pongo abelii]
          Length = 407

 Score =  224 bits (572), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 131/335 (39%), Positives = 194/335 (57%), Gaps = 38/335 (11%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCGQET 77
           H+PV++++V+  L+P  G++ LD TFG+GG++++  +  S+++  ALDRDP A +  +  
Sbjct: 72  HIPVMVDEVLHCLSPQKGQIFLDMTFGSGGHTKAILQKESDIVLYALDRDPTAYALAEHL 131

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              Y +Q       FSQ +  +   GV     DGV+ DLG SSMQ+D  +RGFS +K GP
Sbjct: 132 SELYPKQIRAMLGQFSQAETLLMKAGVQPGTFDGVLMDLGCSSMQLDTPERGFSLRKDGP 191

Query: 133 LDMRMSCSGI----SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           LDMRM         +A+DVVN  + + L  IL   GEEK A +IA AIV+ R   P   T
Sbjct: 192 LDMRMDGGRYPDMPTAADVVNAFDQQALASILRTYGEEKHAKKIASAIVQARSIYPITRT 251

Query: 189 QDLSSLIQ-----KTVYFSKN---NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           Q L+S++        +Y  K+      H AT++FQA+RIFVNNE+ EL  GL++A+K L+
Sbjct: 252 QQLASIVAGAFPPSAIYARKDLLQRSTHIATKTFQAVRIFVNNELNELYMGLKTAQKFLR 311

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKV---MAVRHMIPSNAH---------------- 281
            GG L+ +SFHSLEDR++K+F    S      ++VR  +   +                 
Sbjct: 312 PGGRLVALSFHSLEDRIIKRFLLGISMTERFNLSVRQQVMKTSQLGSDHENTEEVSKRRA 371

Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           P +++ I KKV+ P  +DV  N R+RSAKLRA ++
Sbjct: 372 PLMWELIHKKVLSPQDQDVQDNPRARSAKLRAAIK 406


>gi|297268188|ref|XP_001088477.2| PREDICTED: putative S-adenosyl-L-methionine-dependent
           methyltransferase METT5D1-like isoform 1 [Macaca
           mulatta]
          Length = 407

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 132/335 (39%), Positives = 192/335 (57%), Gaps = 38/335 (11%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCGQET 77
           H+PV++++V+  L+P  G++ LD TFG+GG++++  +  S+++  ALDRDP A +  +  
Sbjct: 72  HIPVMVDEVVHCLSPQKGQIFLDMTFGSGGHTKAILQKESDIVLYALDRDPTAYALAEHL 131

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              Y +Q       FSQ +  +   GV     DGV+ DLG SSMQ+D  +RGFS +K GP
Sbjct: 132 SELYPKQIRAVLGQFSQAEALLTKAGVQPGTFDGVLMDLGCSSMQLDTPERGFSLRKDGP 191

Query: 133 LDMRMSCSGI----SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           LDMRM         +A+DVVN  +   L  IL   GEEK A +IA AIV+ R   P   T
Sbjct: 192 LDMRMDGGRYPDMPTAADVVNALDQPALASILRTYGEEKHARKIASAIVQARSIYPITRT 251

Query: 189 QDLSSLIQ-----KTVYFSKN---NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           Q L+S++        +Y  K+      H AT++FQALRIFVNNE+ EL  GL++A+K L+
Sbjct: 252 QQLASIVAGAFPPSAIYARKDLLQRSTHIATKTFQALRIFVNNELNELYTGLKTAQKFLR 311

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKV---MAVRHMIPSNAH---------------- 281
            GG L+ +SFHSLEDR++K+F    S      ++VR  +   +                 
Sbjct: 312 PGGRLVALSFHSLEDRIIKRFLLGISMTERFNLSVRQQVMKTSQLGSGHENTEEVSMRRA 371

Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           P +++ I KKV+ P  +DV  N R RSAKLRA ++
Sbjct: 372 PLMWELIHKKVLSPQDQDVQDNPRGRSAKLRAAVK 406


>gi|149409519|ref|XP_001510902.1| PREDICTED: similar to androgen receptor associated coregulator
           267-b [Ornithorhynchus anatinus]
          Length = 436

 Score =  224 bits (570), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 138/336 (41%), Positives = 189/336 (56%), Gaps = 40/336 (11%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVSCGQET 77
           HVPV++ +V+  L P  G+ ILD TFG+GG++R+    + G  + ALDRDP A    Q+ 
Sbjct: 101 HVPVMVNEVVNCLAPQQGQSILDMTFGSGGHARAILHKEPGITLYALDRDPSAYKIAQQL 160

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            + Y  Q       FSQ +  +   GV     DGV+ DLG SSMQ+D  +RGFS +K GP
Sbjct: 161 SQTYPNQVRALLGQFSQAETLLLSAGVQPESLDGVLLDLGCSSMQLDTPERGFSLRKDGP 220

Query: 133 LDMRMSCSGI----SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           LDMRM         +A DVVN  + + LT IL   GEE+ A +IA AIV+ R   P   T
Sbjct: 221 LDMRMDSGRYPDLPTAGDVVNALDQQALTSILRTYGEERHAKKIASAIVQARTIYPITRT 280

Query: 189 QDLSSLI-----QKTVYFSKN---NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           Q L+S++        +Y  K+      H AT++FQA+RIFVN+E+ EL  GL++A+K L+
Sbjct: 281 QQLASIVAGAFPDSALYARKDLLQRSTHIATKTFQAIRIFVNDELNELYAGLKTAQKFLR 340

Query: 241 AGGLLIVVSFHSLEDRLVKKFF----------ASRSGKVMAVR----------HMIPSNA 280
            GG L+ +SFHSLEDR+VK+F            SR  K+  V+                +
Sbjct: 341 PGGRLVALSFHSLEDRVVKRFLFKIDITEKFNLSRRKKITQVQRGNVDRENEEESSSDMS 400

Query: 281 HPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           HP  +Q I KKV+ P  +DV  N R RSAKLRA ++
Sbjct: 401 HPE-WQMIHKKVLTPDTQDVQENPRGRSAKLRAAIK 435


>gi|126332528|ref|XP_001380257.1| PREDICTED: similar to methyltransferase 5 domain containing 1,
           [Monodelphis domestica]
          Length = 442

 Score =  224 bits (570), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 137/341 (40%), Positives = 195/341 (57%), Gaps = 38/341 (11%)

Query: 14  HHTIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFA 70
           H T+   H+PV++ +VI  L P  G+ ILD TFG+GG+SR+  +  +   +  LDRDP A
Sbjct: 101 HETMKKLHIPVMVNEVINCLAPRQGQNILDMTFGSGGHSRAILQKELDVTLYVLDRDPTA 160

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGF 125
            +  Q+    Y +Q     + FSQ +  +   GV     DGV+ DLG SSMQ+D  +RGF
Sbjct: 161 YAIAQQLSELYPKQIRALLSQFSQAEAMLMKAGVQPGTVDGVLLDLGCSSMQLDTPERGF 220

Query: 126 SFQKSGPLDMRMSCSGI----SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           SF+K GPLDMRM         +A+DVVN  + + L  IL   GEEK A +IA AIV+ R 
Sbjct: 221 SFRKDGPLDMRMDGGRYPDMHTAADVVNALDQQALALILRTYGEEKYAKKIASAIVQARS 280

Query: 182 SAPFQTTQDLSSLI-----QKTVYFSKN---NRIHPATRSFQALRIFVNNEIEELAQGLR 233
             P   TQ L+S++        +Y  K+      H AT++FQALRIFVNNE+ EL  GL+
Sbjct: 281 IYPITRTQQLASIVAGAFPTAALYERKDLLQRSTHIATKTFQALRIFVNNELNELYVGLK 340

Query: 234 SAEKALKAGGLLIVVSFHSLEDRLVKKFF----------ASRSGKVMAVRHMIPS----- 278
           +A+K L+ GG L+ +SFHSLEDR+VK+F             +  K++  + +  +     
Sbjct: 341 TAQKFLRPGGRLVALSFHSLEDRIVKRFLHGIDVTEKLSPKKRQKIIQAQSLCLNQENEE 400

Query: 279 ---NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
              ++ P  ++ I KKVV P  ++V  N R RSAKLRA ++
Sbjct: 401 FFRSSSPLEWEMIYKKVVTPESQEVQDNPRGRSAKLRAAIK 441


>gi|269926721|ref|YP_003323344.1| S-adenosyl-methyltransferase MraW [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269790381|gb|ACZ42522.1| S-adenosyl-methyltransferase MraW [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 304

 Score =  224 bits (570), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 127/306 (41%), Positives = 188/306 (61%), Gaps = 17/306 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H  VLL++ IALL+  P    +DAT GAGG++    +  S    V+ LD DP A+   Q+
Sbjct: 2   HTSVLLDESIALLDIHPNGKYIDATLGAGGHAEKMLERSSPSGRVLGLDADPRAIELAQQ 61

Query: 77  TMRDYKEQFSLFQATFSQLQ------DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +  +  ++ L    F  ++      D+ P    DGV+FDLG+SSMQ+D    GFSF++ 
Sbjct: 62  RLGRFVGRYVLVHTNFRYIEQAATEHDFNP---CDGVLFDLGISSMQVDAWAAGFSFRRD 118

Query: 131 GPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMR    SG +A+D++ +++ ++L RI+   GEE ++ +IA AI   R+  P  TT 
Sbjct: 119 EPLDMRFDPTSGKTAADIIRESSEQELARIIWEYGEEPKSRQIARAIKSSRE--PIITTV 176

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            L   ++ +VY  K +RIHPATR+FQALRI VN+E++ L +GL  A + L+ GG L+V+S
Sbjct: 177 QLVQAVE-SVYKGKRSRIHPATRTFQALRIAVNDELDALQEGLAGALRVLRVGGRLVVIS 235

Query: 250 FHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK F   RS G +     ++ +  H    + +T+K +VP++E+V  N RSRS
Sbjct: 236 FHSLEDRIVKHFMRERSKGCICPPEQLVCTCNHRPEIKVLTRKPIVPSEEEVKVNPRSRS 295

Query: 309 AKLRAG 314
           AKLRA 
Sbjct: 296 AKLRAA 301


>gi|15806866|ref|NP_295589.1| S-adenosyl-methyltransferase MraW [Deinococcus radiodurans R1]
 gi|20139273|sp|Q9RT99|RSMH_DEIRA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|6459646|gb|AAF11419.1|AE002026_7 conserved hypothetical protein [Deinococcus radiodurans R1]
          Length = 312

 Score =  223 bits (569), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 122/300 (40%), Positives = 172/300 (57%), Gaps = 24/300 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           HVPVL  +++  L PAPGKV +D T G  G++R     G+ V  +D+DP+A+   ++   
Sbjct: 27  HVPVLATEIVEALAPAPGKVFVDGTLGGAGHTRLLLGRGATVYGIDQDPYALDRARQAA- 85

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
                  + Q  +  + + +P  GV   DG++ D+GVSS Q+D   RGFS+    PLDMR
Sbjct: 86  --LPGLHVLQGNYRDMAELLPAAGVTQVDGILLDIGVSSFQLDDAGRGFSYHTEAPLDMR 143

Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
           MS SG SA+DVVN  +  +L  ++   GEE+ + RIA  IV+ R+ AP +TT  L+ +I 
Sbjct: 144 MSQSGESAADVVNDLDETELAALIYEYGEERHSRRIARFIVQAREKAPIETTVQLAEII- 202

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
           K  Y   +  IHPA R+FQALRI+VN+E+  L  GL +AE  L  GG L V+SFHSLEDR
Sbjct: 203 KRAYPGFSKGIHPARRTFQALRIYVNDELGALRDGLSAAEGLLAPGGRLAVISFHSLEDR 262

Query: 257 LVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           +VK+F                      V   +TK+ +V  + +   N R+RSAKLR G R
Sbjct: 263 IVKRFLLGSD-----------------VLTPLTKRPIVAAESEQVDNPRARSAKLRVGER 305


>gi|301770125|ref|XP_002920478.1| PREDICTED: probable S-adenosyl-L-methionine-dependent
           methyltransferase METT5D1-like [Ailuropoda melanoleuca]
 gi|281337489|gb|EFB13073.1| hypothetical protein PANDA_009216 [Ailuropoda melanoleuca]
          Length = 407

 Score =  223 bits (569), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 132/335 (39%), Positives = 193/335 (57%), Gaps = 38/335 (11%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCGQET 77
           H+PV++++V+  L P  G++ LD TFG+GG++R+  +  S++   ALDRDP A +  ++ 
Sbjct: 72  HIPVMVDEVVRCLAPQKGQIFLDMTFGSGGHTRAILQKESDITLYALDRDPTAYAIAEQL 131

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              Y +Q       FSQ +  +   GV     DGV+ DLG SSMQ+D  +RGFS +K GP
Sbjct: 132 SELYPKQIRAMLGQFSQAEALLMKAGVQPGTLDGVLLDLGCSSMQLDAPERGFSLRKDGP 191

Query: 133 LDMRMSCSGI----SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           LDMRM         +A+DVVN  + + L  IL   GEEK A +IA AIV+ R   P   T
Sbjct: 192 LDMRMDGGRYPDMPTAADVVNALDQQALASILRTYGEEKHAKKIASAIVQARSLYPISRT 251

Query: 189 QDLSSLIQ----KTVYFSKNNRI----HPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           Q L+S++      +  F++ + +    H AT++FQA RIFVNNE+ EL  GL++A+K L+
Sbjct: 252 QQLASIVAGAFPPSAVFARKDLLQRSTHIATKTFQAFRIFVNNELNELYTGLKTAQKFLR 311

Query: 241 AGGLLIVVSFHSLEDRLVKKFF----------ASRSGKVMAVRHMIPSNAH--------- 281
            GG L+ +SFHSLEDR+VK+F            S   KV+    +   + +         
Sbjct: 312 PGGRLVALSFHSLEDRIVKRFLLGISMTERFNLSARQKVIQASQLGSGHENKEGGSIGRA 371

Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           P +++ I KKV+ P   DV  N R+RSAKLRA ++
Sbjct: 372 PLMWELIHKKVLTPEDRDVQDNPRARSAKLRAAIK 406


>gi|219849709|ref|YP_002464142.1| S-adenosyl-methyltransferase MraW [Chloroflexus aggregans DSM 9485]
 gi|263445784|sp|B8G5X3|RSMH_CHLAD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|219543968|gb|ACL25706.1| S-adenosyl-methyltransferase MraW [Chloroflexus aggregans DSM 9485]
          Length = 301

 Score =  223 bits (568), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 130/308 (42%), Positives = 186/308 (60%), Gaps = 22/308 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQE 76
           HVPV++ +V+A L P PG   +DAT G GG++ +     + G  ++ +D DP A+    +
Sbjct: 7   HVPVMVAEVVAALAPRPGGRYIDATVGGGGHALAVLQAARPGGRLLGIDADPAALVATAD 66

Query: 77  TMRD--YKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            + +   +E   L   +F+ L     + G   VDG++FDLGVSS Q+D  +RGFSF   G
Sbjct: 67  RLAEAGLREHAVLCHGSFADLAVIAGETGFINVDGILFDLGVSSYQLDTPERGFSFAADG 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMR+  + G +A+D+VN  + ++L  ++   GEE  A RIA AIV+RR++ PFQ T D
Sbjct: 127 PLDMRLDPTQGPTAADLVNTLSERELADVIFQYGEEHAARRIARAIVERRRTQPFQRTAD 186

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+++I + V   +  RIHPATR+FQALRI VN E++ LA  L  A   L  GG L+V+SF
Sbjct: 187 LAAVIARVVG-GRRGRIHPATRTFQALRIAVNRELDRLAAALPQAVHLLAPGGRLVVISF 245

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDR+VK+F  + +             A P +  + TKK V  T ++VA N R+RSAK
Sbjct: 246 HSLEDRIVKQFMRAEA-----------EGATPRLVIN-TKKPVAATDDEVATNPRARSAK 293

Query: 311 LRAGMRTV 318
           LR   R V
Sbjct: 294 LRVATRIV 301


>gi|58698054|ref|ZP_00372978.1| S-adenosyl-methyltransferase MraW [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|225629940|ref|YP_002726731.1| S-adenosyl-methyltransferase [Wolbachia sp. wRi]
 gi|254813210|sp|C0R598|RSMH_WOLWR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|58535411|gb|EAL59486.1| S-adenosyl-methyltransferase MraW [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|225591921|gb|ACN94940.1| S-adenosyl-methyltransferase [Wolbachia sp. wRi]
          Length = 293

 Score =  223 bits (568), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 125/302 (41%), Positives = 189/302 (62%), Gaps = 18/302 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78
           H PVLL+++++LL+P  G + +DATFGAGGYS++  +     V A+DRD        +  
Sbjct: 3   HTPVLLKEMLSLLSPQDGGIYVDATFGAGGYSKAILESADCKVYAIDRDETVTKFYDDLS 62

Query: 79  RDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
             Y ++  LF   FS +++ +     +G+DG+VFD+GVSSMQ+D GDRGFSF   GPLDM
Sbjct: 63  VRYPDRIKLFIEKFSNIKNLLDSNNIEGIDGIVFDIGVSSMQLDNGDRGFSFLHDGPLDM 122

Query: 136 RM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
            M + S I+AS  VN    +++   +   G E+ + +IA AIV  R+    +TT +L+ +
Sbjct: 123 SMDNSSYINASTFVNALREEEIANTIYNYGGERHSRKIARAIVNARKKKTIKTTFELADI 182

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           + ++V F   ++I PATR+FQA+RI+VN+E+ EL +G+++A + L   G LIVV+FHSLE
Sbjct: 183 V-RSVVFRGKSKIDPATRTFQAIRIWVNDELGELEKGIKAASEILSENGKLIVVTFHSLE 241

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           DR+VK FF          + +  ++     F  + KKV+  + E+V+ N RSRSAKLRA 
Sbjct: 242 DRIVKTFF----------KDLCATDCK--TFSLLNKKVIEASIEEVSANPRSRSAKLRAI 289

Query: 315 MR 316
            R
Sbjct: 290 QR 291


>gi|296217807|ref|XP_002755199.1| PREDICTED: putative S-adenosyl-L-methionine-dependent
           methyltransferase METT5D1 [Callithrix jacchus]
          Length = 406

 Score =  223 bits (567), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 133/334 (39%), Positives = 191/334 (57%), Gaps = 37/334 (11%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCGQET 77
           H+PV++++V+  L+P  G++ LD TFG+GG++++  +  S+++  ALDRDP A +  +  
Sbjct: 72  HIPVMVDEVVHCLSPQKGQIFLDMTFGSGGHTKAILQKESDIVLYALDRDPTAYALAEHL 131

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              Y +Q       FSQ +  +    V     DGV+ DLG SSMQ+D  +RGFS +K GP
Sbjct: 132 SELYPKQIRAMLGRFSQAETLLMKAEVQPGTFDGVLMDLGCSSMQLDTSERGFSLRKDGP 191

Query: 133 LDMRMSCSGI----SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           LDMRM         +A+DVVN  + + L  IL   GEEK A +IA AIV+ R   P   T
Sbjct: 192 LDMRMDGDRYPDMPTAADVVNALDQQALASILRAYGEEKHAKKIASAIVQARSIYPITRT 251

Query: 189 QDLSSLIQ-----KTVYFSKN---NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           Q L+S+I        +Y  K+      H AT++FQALRIFVNNE+ EL  GL++A+K L+
Sbjct: 252 QQLASIIAGAFPPSAIYARKDLLQRSTHIATKTFQALRIFVNNELNELHTGLKTAQKFLR 311

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKV---MAVRHMIPSNAH---------------P 282
            GG L+ +SFHSLEDR+VK+F    S      ++VR  +   +                P
Sbjct: 312 PGGRLVALSFHSLEDRIVKRFLLGISMTERFNLSVRQQVMKASRLDSDHENVEVSMRRAP 371

Query: 283 AVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
            +++ I KKV+ P   DV  N R RSAKLRA ++
Sbjct: 372 LMWELIHKKVLSPQSRDVQDNPRGRSAKLRAAIK 405


>gi|296532828|ref|ZP_06895500.1| S-adenosyl-methyltransferase MraW [Roseomonas cervicalis ATCC
           49957]
 gi|296266841|gb|EFH12794.1| S-adenosyl-methyltransferase MraW [Roseomonas cervicalis ATCC
           49957]
          Length = 311

 Score =  223 bits (567), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 124/301 (41%), Positives = 180/301 (59%), Gaps = 9/301 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSNVIALDRDPFAVSCGQETM 78
           H+PV+L +V+  L P  G   +D TFG GGY+R+   +    + A DRDP A++ GQ  +
Sbjct: 4   HLPVMLAEVLDNLAPRAGGAYVDGTFGGGGYARAILGRAACTLHAFDRDPDAIARGQALL 63

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
            +   + +L +  F ++++ + ++GV   DGVV DLGVSS Q+D  +RGFSF+  GPLDM
Sbjct: 64  AESAGRLTLIERRFGEMREALAERGVTTVDGVVLDLGVSSFQLDQAERGFSFRFDGPLDM 123

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RM  +G SA+D+VN     +L  IL  LGEE+ + RIA  +V  R+ AP +TT  L SLI
Sbjct: 124 RMEKAGPSAADLVNTLPEAELADILWQLGEERHSRRIARTLVAARREAPIETTGRLRSLI 183

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
              +    +  I  ATRSFQALR+ VN+E+ E+ +GL +A   L  GG L+VV+FHSLED
Sbjct: 184 HAVMPRDPSG-IDSATRSFQALRLKVNDELGEVERGLEAAASLLAPGGRLVVVAFHSLED 242

Query: 256 RLVKKFFASRSGKVMAVRHMIPS----NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           R+VK+F    +G+        PS          F+ +    + P   ++A N R+RSA+L
Sbjct: 243 RIVKRFMQQAAGRGPGASRHDPSALLGGGQKPRFRLVANNALRPGAAELAANPRARSARL 302

Query: 312 R 312
           R
Sbjct: 303 R 303


>gi|294142812|ref|YP_003558790.1| S-adenosyl-methyltransferase MraW [Shewanella violacea DSS12]
 gi|20139165|sp|Q9F1N8|RSMH_SHEVD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|11761327|dbj|BAB19194.1| MraW [Shewanella violacea]
 gi|293329281|dbj|BAJ04012.1| S-adenosyl-methyltransferase MraW [Shewanella violacea DSS12]
          Length = 313

 Score =  222 bits (566), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 128/308 (41%), Positives = 181/308 (58%), Gaps = 15/308 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76
           H+ VLL + +A LN  P  + +D TFG GG+SR   K +G N  +IA+DRDP A+   ++
Sbjct: 7   HLSVLLTETVAGLNIKPDGIYIDGTFGRGGHSREVLKHLGDNGRLIAIDRDPQAIIAAEQ 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              D +  FS+    F QL DYV D G    VDGV+ D GVSS Q+D  +RGFSF + GP
Sbjct: 67  FADDAR--FSIVHGGFGQLADYVEDLGLKGKVDGVLLDFGVSSPQLDDAERGFSFLRDGP 124

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G +A++ + +  ++D+  +    GEEK +  IA  I   R   PF  T++L
Sbjct: 125 LDMRMDNSQGQTAAEWIARTEIEDMAWVFKTYGEEKNSRHIARCIAADRDKTPFLRTKEL 184

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI +     + N+ HPATR FQA+RI++N+E+E++ Q L  A K L   G L V+SFH
Sbjct: 185 ADLIARICKSKERNK-HPATRVFQAIRIYINSELEQIDQALEGALKVLAPQGRLSVISFH 243

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP---SNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SLEDR+VK+F   R  + M+V H +P   +  +         K   P+ E+V  N+RSRS
Sbjct: 244 SLEDRIVKRFI-RRHSQGMSVPHGLPITEAEINKTRLLKAVGKATKPSTEEVEMNKRSRS 302

Query: 309 AKLRAGMR 316
           + LR   R
Sbjct: 303 SVLRVAER 310


>gi|170057826|ref|XP_001864654.1| s-adenosyl-methyl transferase mraw [Culex quinquefasciatus]
 gi|167877164|gb|EDS40547.1| s-adenosyl-methyl transferase mraw [Culex quinquefasciatus]
          Length = 1479

 Score =  222 bits (566), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 136/327 (41%), Positives = 184/327 (56%), Gaps = 30/327 (9%)

Query: 20   HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
            HVPV+  + I  L P   ++ +D TFGAGG+++   K   N  +I LDRDP A    QE 
Sbjct: 1151 HVPVMAAEAIKFLKPQDSELFIDMTFGAGGHTKQILKAAPNAKIITLDRDPVAHELAQEM 1210

Query: 78   MRDYKEQFSLFQATFSQL-----QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             + Y  Q       FS+L     +  V  + +DG++FD G SSMQ D G+RGFS  K+GP
Sbjct: 1211 AKRYPGQIYPVLGRFSELPAKLKELNVNQRSIDGMIFDFGCSSMQFDEGERGFSISKNGP 1270

Query: 133  LDMRMS---C-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQT 187
            LDMRM    C    SA+DV+ + +  DL RIL + GEEK A RIA AIV+ R S    +T
Sbjct: 1271 LDMRMDKDRCPDAPSAADVLARIDEMDLARILKVYGEEKFAKRIARAIVEARHSIKKIET 1330

Query: 188  TQDLSSLIQKTVY----FSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
            T++L+ L+Q          K  R  HPAT++FQALRIFVNNE+ E+  G+  A+  LK G
Sbjct: 1331 TKELAELVQTCCASEFRLDKLQRPSHPATKTFQALRIFVNNELNEINYGMILAQHYLKIG 1390

Query: 243  GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-------------FQSIT 289
            G +I ++FHSLED +VK+         MA +  +   +H                +  +T
Sbjct: 1391 GKMITITFHSLEDTIVKRHVMGNVANDMANKLPLKYCSHTICHDQTVMDAALKPNWHQMT 1450

Query: 290  KKVVVPTQEDVAFNRRSRSAKLRAGMR 316
            K VVVP+  +V  N RSRSAKLRA +R
Sbjct: 1451 KHVVVPSDAEVEENPRSRSAKLRAVVR 1477


>gi|294056587|ref|YP_003550245.1| S-adenosyl-methyltransferase MraW [Coraliomargarita akajimensis DSM
           45221]
 gi|293615920|gb|ADE56075.1| S-adenosyl-methyltransferase MraW [Coraliomargarita akajimensis DSM
           45221]
          Length = 318

 Score =  222 bits (566), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 120/301 (39%), Positives = 183/301 (60%), Gaps = 6/301 (1%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF--CKMGSNVIALDRDPFAVSCGQ 75
           G HVPVLL + + LL+P  G  +LD TFG GG++R+      G  V+ALDRDP AV    
Sbjct: 15  GGHVPVLLRETLELLSPRAGAKLLDGTFGGGGHTRALLGAAEGVTVVALDRDPEAVERAA 74

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           E   ++ ++F L    F  L D + + G DG++FD G+SS Q+D  +RGFSF++  P+DM
Sbjct: 75  EVEAEFGQRFRLVSMNFGDLCD-LEESGFDGILFDFGLSSFQLDTAERGFSFREDAPVDM 133

Query: 136 RMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM+  +GISA++ +  A+ + L R +   GEEK+  ++  +I+  R +   Q T  LS L
Sbjct: 134 RMNPNAGISAAEFLETADEEALVRAVRNYGEEKRWRKVVQSILSARGTGRLQRTSSLSEL 193

Query: 195 IQKTVYFSKNNR--IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           I   V      R  IHPATRSFQ +R+ VN+E+  + +GL +A + L++GG L  +SFHS
Sbjct: 194 IADAVGPGPRGRKTIHPATRSFQGIRVEVNDELNAIERGLPAAFERLQSGGTLAAISFHS 253

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK+F    +G+          +    + + I+ + +VP ++++A N RSRSA++R
Sbjct: 254 LEDRIVKRFCRRMAGRPEHAGDSRTQDERQVLGKMISTRPIVPAEDEIAINPRSRSARMR 313

Query: 313 A 313
           A
Sbjct: 314 A 314


>gi|15606908|ref|NP_214289.1| hypothetical protein aq_1875 [Aquifex aeolicus VF5]
 gi|8134826|sp|O67721|RSMH_AQUAE RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|2984161|gb|AAC07695.1| hypothetical protein aq_1875 [Aquifex aeolicus VF5]
          Length = 294

 Score =  222 bits (566), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 123/304 (40%), Positives = 180/304 (59%), Gaps = 22/304 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           H PVLL + +  L    GK+ +D T G GG+++   K   ++  I +DRD  A+   +E 
Sbjct: 5   HKPVLLRESVEFLTENGGKIYVDCTLGGGGHAKEILKKRKDIFLIGIDRDEEAIEIAKEN 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +++++ +FS+++A F  L   + ++G   VDG +FDLGVS  Q+  G+RGF+FQ+  PLD
Sbjct: 65  LKEFEGRFSIYKANFKDLDLVLKEEGIDKVDGFLFDLGVSMYQLK-GERGFTFQEDQPLD 123

Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM     ++A  VVN    ++L RIL   GEEK A RIA AIV+RR+  P +TT +L  
Sbjct: 124 MRMDKEQTLTACKVVNNYPERELIRILKEYGEEKFAVRIAKAIVQRRKKKPIETTGELVD 183

Query: 194 LIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +I   V  + K+ +IHPATR+FQA+RI VN E+E L + L        + G L+V++FHS
Sbjct: 184 VILSVVPEYYKHGKIHPATRTFQAIRIEVNKELESLKEALEKTPYHFNSKGRLVVITFHS 243

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK              H I       +F+ ITKK V P++E++  N  SRSAKLR
Sbjct: 244 LEDRIVK--------------HFIKEKEKEGIFRIITKKPVTPSEEEIRENPASRSAKLR 289

Query: 313 AGMR 316
              +
Sbjct: 290 VAEK 293


>gi|163794519|ref|ZP_02188490.1| S-adenosyl-methyltransferase mraW [alpha proteobacterium BAL199]
 gi|159180243|gb|EDP64766.1| S-adenosyl-methyltransferase mraW [alpha proteobacterium BAL199]
          Length = 326

 Score =  222 bits (565), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 124/287 (43%), Positives = 171/287 (59%), Gaps = 10/287 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78
           H+PV+LE V+  L P  G   +D TFG GGY+R+     +  V A+DRDP A+       
Sbjct: 8   HIPVMLEPVVEALAPRDGGRYVDGTFGVGGYTRALLTAANCTVYAIDRDPEAIRRAGILA 67

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           +++  +    +  F  +   V + G   VDG+  DLGVSS QID  +RGFSF+  GPLDM
Sbjct: 68  QEFGGRLIAIEGRFGAMDQLVANAGAAQVDGIALDLGVSSPQIDDAERGFSFRFDGPLDM 127

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RM  +G SA+DVVN A   +L  I+  LGEE+ A R+A A+V  R + P   T +L++++
Sbjct: 128 RMEKAGPSAADVVNGATEAELADIVFYLGEERYARRVARALVAARLNGPITRTGELAAIV 187

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           ++ V  SK+  I  ATR+FQALRI VN E++EL  GL +AE+ L  GG L VVSFHSLED
Sbjct: 188 RRVVPSSKSGGIDSATRTFQALRIHVNRELDELDHGLEAAERLLSPGGRLAVVSFHSLED 247

Query: 256 RLVKKFFASRSGKVMA-VRHMIPSNAHPA-----VFQSITKKVVVPT 296
           R VK F   RSG+     RH + + A P       F+ IT + + P+
Sbjct: 248 RRVKTFLRRRSGRTSGPSRHAMAAIAGPVDGPRPTFEVITGRPIAPS 294


>gi|269838022|ref|YP_003320250.1| S-adenosyl-methyltransferase MraW [Sphaerobacter thermophilus DSM
           20745]
 gi|269787285|gb|ACZ39428.1| S-adenosyl-methyltransferase MraW [Sphaerobacter thermophilus DSM
           20745]
          Length = 326

 Score =  222 bits (565), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 130/305 (42%), Positives = 183/305 (60%), Gaps = 8/305 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H PV+L + + LL   PG   +DATFG GG++R+  +  S    V+ALD DP AV+  + 
Sbjct: 20  HQPVMLAESLNLLQVRPGGRYIDATFGGGGHTRAILEASSPDGRVLALDADPAAVARAEA 79

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
              +   + ++    F+Q+       G   VDGV+ DLG SS QID   RGFSFQ+ GPL
Sbjct: 80  LAEEVGPRLTVRHGNFAQIARLARAAGFDAVDGVLMDLGFSSFQIDEPSRGFSFQRPGPL 139

Query: 134 DMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMR    +G SA ++VN  +  DL+RI+   GEE +A RIA AIV  R+  P +TT  L+
Sbjct: 140 DMRFDPTTGSSAREIVNTWDEADLSRIIFEYGEEPKARRIARAIVAARRERPIETTDHLA 199

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +++++ V   +   IHPATR+FQALRI VN E+E L QGL  A   L  GG L+V++FHS
Sbjct: 200 AIVEQAVGGRRGRAIHPATRTFQALRIAVNRELEVLEQGLAGALDVLAPGGRLVVIAFHS 259

Query: 253 LEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK++F + +   +      +    H A  + +T K + PT+ + A N RSRSA+L
Sbjct: 260 LEDRIVKQYFRTEARDCICPPETPVCVCGHRARLRVVTPKPLRPTEAEQALNPRSRSARL 319

Query: 312 RAGMR 316
           RA  R
Sbjct: 320 RAAER 324


>gi|119331204|ref|NP_001073250.1| probable methyltransferase-like protein 15 [Bos taurus]
 gi|160012244|sp|A0JN95|MET15_BOVIN RecName: Full=Probable methyltransferase-like protein 15; AltName:
           Full=Methyltransferase 5 domain-containing protein 1
 gi|117306276|gb|AAI26576.1| Methyltransferase 5 domain containing 1 [Bos taurus]
 gi|296479746|gb|DAA21861.1| putative S-adenosyl-L-methionine-dependent methyltransferase
           METT5D1 [Bos taurus]
          Length = 407

 Score =  222 bits (565), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 132/335 (39%), Positives = 190/335 (56%), Gaps = 38/335 (11%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCGQET 77
           H+PV++++V+  L P  G+V LD TFG+GG++R+  +   ++   ALDRDP A +  ++ 
Sbjct: 72  HIPVMVDEVVRCLAPQKGQVFLDMTFGSGGHTRAILQKEPDITLYALDRDPTAYAIAEQL 131

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              Y +Q       FSQ +  +   GV     DGV+ DLG SSMQ+D  +RGFS +K GP
Sbjct: 132 SELYPKQIRAILGQFSQAEALLMKAGVQPGTLDGVLLDLGCSSMQLDTPERGFSLRKDGP 191

Query: 133 LDMRMSCSGI----SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           LDMRM         +A+DVVN  + + L  IL   GEEK A +IA AI++ R   P   T
Sbjct: 192 LDMRMDGDRYPDMPTAADVVNALDQQALASILRAYGEEKHAKKIASAIIQARGLYPITRT 251

Query: 189 QDLSSLIQ-----KTVYFSKN---NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           Q L+S++        +Y  K+      H AT++FQA RIFVNNE+ EL  GL++A+K L+
Sbjct: 252 QQLASIVAGAFPPSALYARKDLLQRPTHIATKTFQAFRIFVNNELNELYTGLKTAQKFLR 311

Query: 241 AGGLLIVVSFHSLEDRLVKKFF----------ASRSGKVMAVRHM---------IPSNAH 281
            GG L+ +SFHSLEDR++K+F            S   KV+    +         + +   
Sbjct: 312 PGGHLVALSFHSLEDRIIKRFLLGISMTERFNLSARQKVIQKSQLDSDQENKEGVSTGKA 371

Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           P +++ I KKV+ P  EDV  N R RSAKLRA ++
Sbjct: 372 PLMWKLIHKKVLTPEDEDVQDNPRGRSAKLRAAIK 406


>gi|163782688|ref|ZP_02177685.1| hypothetical protein HG1285_17430 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882261|gb|EDP75768.1| hypothetical protein HG1285_17430 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 289

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 124/305 (40%), Positives = 186/305 (60%), Gaps = 26/305 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H PVLLE+   LL    G++ LD T G GG+++   +      VI +DRD  A+   +E 
Sbjct: 2   HTPVLLEESTDLLLENSGELYLDCTLGLGGHTKRILEKNPQAFVIGIDRDEEAIEIAKEN 61

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +++++ + ++++A F+ L + +  +GV   DG++ DLGVS  Q+   +RGFSFQ   PLD
Sbjct: 62  LKEFEGRIAIYKADFADLDEVLRAEGVERVDGILLDLGVSMFQLKS-ERGFSFQIDAPLD 120

Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM     ++A  VVN+ + K+L RIL   GEE+ + +IA AIV+ R+  P +TT++L+ 
Sbjct: 121 MRMDKDQKLTAYKVVNEYSEKELARILWEYGEERLSRKIARAIVQHRREKPIETTKELAE 180

Query: 194 LIQKTVYFSK--NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           L+  ++Y ++  + R HPAT++FQA+RI VN E+E L   L      L   G L+V+SFH
Sbjct: 181 LVS-SLYPARMRHGRTHPATKTFQAIRIEVNRELESLKTALGKTPDLLNPKGRLVVISFH 239

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+VK FF  RS                  F+ +TKK ++P+QE++A N  SRSAKL
Sbjct: 240 SLEDRIVKNFFRDRSD----------------AFRILTKKPIIPSQEEIAMNPASRSAKL 283

Query: 312 RAGMR 316
           RAG R
Sbjct: 284 RAGER 288


>gi|325283143|ref|YP_004255684.1| Ribosomal RNA small subunit methyltransferase H [Deinococcus
           proteolyticus MRP]
 gi|324314952|gb|ADY26067.1| Ribosomal RNA small subunit methyltransferase H [Deinococcus
           proteolyticus MRP]
          Length = 299

 Score =  221 bits (563), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 130/316 (41%), Positives = 183/316 (57%), Gaps = 38/316 (12%)

Query: 8   TMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRD 67
           T  +  H     H+PVL ++V+  L PAPG++I+D T G  G++R   + G+ VI +D+D
Sbjct: 2   TQEAVPHTPTLSHLPVLPQEVMDALAPAPGRLIVDGTLGGAGHTRMLLERGATVIGIDQD 61

Query: 68  PFAVS-------CGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQ 117
           P+A+S        G  T+R            F  +Q  +   GV   DG++ D+GVSS Q
Sbjct: 62  PYALSRVEAEGLAGLRTVR----------GNFRDMQTLLAGIGVTQVDGILLDIGVSSFQ 111

Query: 118 IDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177
           +D  +RGFS+     LDMRMS SG SA+D+VN     +L  ++   GEEK + R+A AIV
Sbjct: 112 LDDVERGFSYHSEAALDMRMSQSGPSAADLVNDLEEAELAALIYEYGEEKHSRRLARAIV 171

Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
             RQSAP +TT +L+ +I K  Y      IHPA R+FQALRI VN+E+  L +GL++AE 
Sbjct: 172 AARQSAPIETTTELADII-KRAYPGFVRGIHPARRTFQALRIAVNDELGALREGLQAAEA 230

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297
            L  GG L V+SFHSLEDR+VK+F        +    + P          +TK+  V ++
Sbjct: 231 LLAPGGRLGVISFHSLEDRIVKRFL-------LGSERLRP----------LTKRPAVASE 273

Query: 298 EDVAFNRRSRSAKLRA 313
           E+ A N RSRSAKLR+
Sbjct: 274 EEQAANPRSRSAKLRS 289


>gi|313680156|ref|YP_004057895.1| S-adenosyl-methyltransferase mraw [Oceanithermus profundus DSM
           14977]
 gi|313152871|gb|ADR36722.1| S-adenosyl-methyltransferase MraW [Oceanithermus profundus DSM
           14977]
          Length = 286

 Score =  221 bits (563), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 127/301 (42%), Positives = 177/301 (58%), Gaps = 27/301 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDP----FAVSCGQ 75
           H PVLL + + LLN  P  V +DATFG GG++R   + G  V+A+D+DP     A   G 
Sbjct: 8   HEPVLLHESLDLLNVQPEGVYVDATFGGGGHTRGIVERGGQVVAIDQDPDAHERAERLGG 67

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
             +R  +  F   +A    L   VP   V G++ DLGVSS   D  +RGFS+Q+ GPLDM
Sbjct: 68  VAIRFVRSNFRDLEAVLDALG--VPS--VQGILADLGVSSYHFDDPERGFSYQREGPLDM 123

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RM   G +A++VVN    ++L  ++   GEE+Q+ RIA AIV+ R+ AP  TT  L+ ++
Sbjct: 124 RMGHEGPTAAEVVNTLGEEELAELIWRYGEERQSRRIARAIVEARKEAPIATTTQLAEIV 183

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           ++ V F K    HPA ++FQALRI+VN+E+  L   L +A + L  GG L+V+SFHS+ED
Sbjct: 184 RRAVGFRKAG--HPARKTFQALRIYVNDELGALEALLEAAGRVLAPGGRLVVISFHSMED 241

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           R+VK F                    P  F+ +TKK ++P  E+ A N R+RSAKLRAG 
Sbjct: 242 RIVKHFL----------------KGDPR-FRVLTKKPLMPGPEEAARNPRARSAKLRAGE 284

Query: 316 R 316
           R
Sbjct: 285 R 285


>gi|320161732|ref|YP_004174957.1| S-adenosyl-methyltransferase MraW [Anaerolinea thermophila UNI-1]
 gi|319995586|dbj|BAJ64357.1| S-adenosyl-methyltransferase MraW [Anaerolinea thermophila UNI-1]
          Length = 312

 Score =  221 bits (563), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 131/302 (43%), Positives = 183/302 (60%), Gaps = 14/302 (4%)

Query: 20  HVPVLLEKVIALLNP-APGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
           H PVL +++I  L P +PG+ + DAT GAGG++    +  S    ++ LD DP A++   
Sbjct: 8   HRPVLYQEIILALRPHSPGRYV-DATVGAGGHAAGILEASSPKGELLGLDPDPQALALAS 66

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + +  + E+  L QA++  L++ +   G   VDG+VFDLGVSSMQ+D  +RGFSF   G 
Sbjct: 67  QRLSIFGERVHLVQASYVTLKEQLAVLGWQEVDGIVFDLGVSSMQLDTPERGFSFSAEGK 126

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMR   C   +A D+VN    ++L RIL   GEE+ A RIA AIV   Q+ P  TT++L
Sbjct: 127 LDMRFDPCQDTTAEDLVNHLPEEELARILWEYGEERYARRIARAIV---QARPLHTTREL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + L+ + V   K  RIHPATR+FQALRI VN E+E +   L  A + LKAGG L V+SFH
Sbjct: 184 AELVARIV-GGKRERIHPATRTFQALRIAVNRELEAIETVLPQAVECLKAGGRLAVISFH 242

Query: 252 SLEDRLVKKFFASRSGKVMA-VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDRLVK FF   S   +      + +  H A  + +T+  +  + E+V  N R+RSA+
Sbjct: 243 SLEDRLVKHFFRRESRDCLCPPEQPVCTCGHKASLREVTRHPIEASDEEVRENPRARSAR 302

Query: 311 LR 312
           LR
Sbjct: 303 LR 304


>gi|270307713|ref|YP_003329771.1| S-adenosyl-methyltransferase [Dehalococcoides sp. VS]
 gi|270153605|gb|ACZ61443.1| S-adenosyl-methyltransferase [Dehalococcoides sp. VS]
          Length = 349

 Score =  221 bits (562), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 127/312 (40%), Positives = 188/312 (60%), Gaps = 20/312 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H+PV+LE+ I  L   PG   +D T GAGG+S +  +    G  ++++D DP A++   E
Sbjct: 6   HIPVMLEESIQGLGVIPGGRYVDCTLGAGGHSEAILEHSYPGGQLLSIDADPKAIALAAE 65

Query: 77  TMRDYKEQFSLFQATFSQLQD------YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            ++ +     L    F+ L+D      Y+P   V G++FDLG+SSMQ+D  + GFSFQ  
Sbjct: 66  RLKGFGSSVLLVNDNFANLKDICQRYEYMP---VHGILFDLGLSSMQLDREESGFSFQTE 122

Query: 131 GPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMR S    +SA+D+VN   +  L+ ++   GEE  + RIA AI+++R   PF+TT 
Sbjct: 123 APLDMRFSPGQELSAADIVNTYGLAGLSDLIWKYGEEPFSRRIARAILEKR---PFKTTT 179

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           +L+S+I+K V   ++ RIHPATR+FQALRI VN E+  L   L  A+  L  GG L+V+S
Sbjct: 180 ELASVIEKAV-GGRHGRIHPATRTFQALRIAVNEELSHLESALAQAQSLLGHGGRLVVIS 238

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNA--HPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +HSLEDR+VK++F  R  K       IP     H    + I ++V+ P+ E+++ N RSR
Sbjct: 239 YHSLEDRIVKQYF-QREAKGCICPDDIPQCVCDHQPSLRIINRRVITPSDEEISRNPRSR 297

Query: 308 SAKLRAGMRTVE 319
           SAK+R   R +E
Sbjct: 298 SAKMRVAERIIE 309


>gi|222528776|ref|YP_002572658.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor bescii DSM
           6725]
 gi|263446717|sp|B9MQ93|RSMH_ANATD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|222455623|gb|ACM59885.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor bescii DSM
           6725]
          Length = 307

 Score =  221 bits (562), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 125/307 (40%), Positives = 191/307 (62%), Gaps = 10/307 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
           +H+PVLLE+ ++ L   P  + +DATFG GG+S+   +  SN   +IA+DRD  A+  G+
Sbjct: 3   EHIPVLLEESVSFLITNPDGIYVDATFGLGGHSKRILEKISNKGFLIAIDRDLEAIELGK 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +  YK    +  ++FS++ + +   G+   DG++FD GVSS+Q+D  +RGFS+ K   
Sbjct: 63  RKLEAYK-NVKIVHSSFSKVDELLECLGIEKIDGILFDFGVSSLQLDKQERGFSYNKEAF 121

Query: 133 LDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM + S ++A DVVN  + +DL +I+   GEE+ A RIA AIV+RR   P +TT +L
Sbjct: 122 LDMRMDTTSKLTAYDVVNFYSQEDLEKIIREYGEERFARRIAKAIVERRSKKPIETTTEL 181

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           SSLI   V   K+   HPA R+FQA+RI VN E++E+   L  + + L++GG +  +SFH
Sbjct: 182 SSLISSLVPRPKDGS-HPAQRTFQAIRIEVNGELDEIKIALEKSLRFLRSGGRICAISFH 240

Query: 252 SLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK+FF   S + +  + + +           ITKK + P++E++  N+RS SAK
Sbjct: 241 SLEDRIVKEFFKFHSLECVCPKDIPVCRCGKKKELNIITKKPITPSKEEIESNKRSHSAK 300

Query: 311 LRAGMRT 317
           LR   + 
Sbjct: 301 LRVAEKV 307


>gi|328881795|emb|CCA55034.1| rRNA small subunit methyltransferase H [Streptomyces venezuelae
           ATCC 10712]
          Length = 318

 Score =  221 bits (562), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 126/311 (40%), Positives = 192/311 (61%), Gaps = 12/311 (3%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74
           HVPV+L++ + +L PA   PG V++D T G GG+S +  +    + ++ALDRD  A+   
Sbjct: 6   HVPVMLQRCLDMLAPALERPGAVVVDCTLGLGGHSEALLRRFPEARLVALDRDKEALRLS 65

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            E +  Y E+ +L  A + +L + +   G   VDGV+FDLGVSSMQ+D  DRGF++ +  
Sbjct: 66  GERLAPYGERATLVHAVYDELPEVLDRLGLATVDGVLFDLGVSSMQLDEADRGFAYAQDA 125

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM   +GISA++V+N     +L RIL   GEEKQA RI  AIV+ R+  PF  +  
Sbjct: 126 PLDMRMDQTTGISAAEVLNTYAPGELVRILRAYGEEKQAKRIVSAIVREREKEPFSNSAR 185

Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  LI++++   +K    +PA R+FQALRI VN E++ + + + +A KA+  GG ++V+S
Sbjct: 186 LVELIRESLPQAAKRTGGNPAKRTFQALRIEVNRELDSVEKAIPAAVKAIGVGGRVVVLS 245

Query: 250 FHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           + SLEDR+VK+ FA+ +         ++P    P   + +T+   +PT+E+VA NRR+  
Sbjct: 246 YQSLEDRIVKQVFAAGAATTAPPGLPVVPEKYQPR-LKLLTRGAELPTEEEVAENRRAAP 304

Query: 309 AKLRAGMRTVE 319
           A+LR   R  E
Sbjct: 305 ARLRGAERIRE 315


>gi|196230915|ref|ZP_03129776.1| S-adenosyl-methyltransferase MraW [Chthoniobacter flavus Ellin428]
 gi|196225256|gb|EDY19765.1| S-adenosyl-methyltransferase MraW [Chthoniobacter flavus Ellin428]
          Length = 332

 Score =  220 bits (561), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 125/298 (41%), Positives = 176/298 (59%), Gaps = 7/298 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H  VLL + +  L PAPGKVI+D T G GG++ +    G+ VI  D+DP A++     + 
Sbjct: 28  HESVLLAETVERLAPAPGKVIVDGTLGGGGHTAALLAAGAQVIGFDQDPEALAFAGRKLA 87

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
           ++  QF     +F++  + +   GV   DG + DLGVSS Q+D  +RGFSF   GPLDMR
Sbjct: 88  EFGGQFRPVHTSFAKAGEALDQLGVEKIDGAMLDLGVSSRQLDAPERGFSFMHDGPLDMR 147

Query: 137 MSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M  +  ISA+D+VN      L +I    GEE  A +IA  +V+ R  APF+TT  L+  +
Sbjct: 148 MDPTNLISAADLVNTMAGDQLEKIFRNYGEEPAARKIAAHLVRDRLVAPFRTTLQLAQAV 207

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           ++ V   +++R HPATR FQALRI VN E+E L  GL    + L  GG L +++FHSLED
Sbjct: 208 ERVV--PRHSRTHPATRVFQALRIAVNRELEALTLGLEQFSQRLAPGGRLAIITFHSLED 265

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPA-VFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           R+VK FF  R+   +       +  +P  +F++IT K VV +  +   N RSRSAKLR
Sbjct: 266 RIVKVFFKERAAAFIDRPEWPEARPNPIHIFKAITGKPVVASDAEQRANPRSRSAKLR 323


>gi|15616841|ref|NP_240054.1| hypothetical protein BU224 [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219681595|ref|YP_002467981.1| hypothetical protein BUAP5A_220 [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|257471280|ref|ZP_05635279.1| hypothetical protein BaphL_01110 [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|11387278|sp|P57319|RSMH_BUCAI RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|254813207|sp|B8D922|RSMH_BUCA5 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|25302081|pir||D84956 hypothetical protein [imported] - Buchnera sp. (strain APS)
 gi|10038905|dbj|BAB12940.1| hypothetical protein [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
 gi|219624438|gb|ACL30593.1| hypothetical protein BUAP5A_220 [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
          Length = 312

 Score =  220 bits (560), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 126/307 (41%), Positives = 194/307 (63%), Gaps = 15/307 (4%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSC 73
           I  H+PV+ +++I  L      + +D+TFG GG+S    K +G N  + ++DRDP A S 
Sbjct: 4   IFKHIPVMKKELIDSLKIKKNGIYIDSTFGTGGHSNEILKKLGQNGRLYSIDRDPIAFSI 63

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQK 129
           G E ++D   +F +    FS+L D+  ++     V+G++FDLGVSS+QID   RGFSF+ 
Sbjct: 64  GSE-IKD--SRFHIINENFSKLLDFAKNEKIIGKVNGIIFDLGVSSIQIDDYRRGFSFKN 120

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM+ + GISAS+ + ++NVK+++ +L   GEE+ + +IA+AI +R Q     +T
Sbjct: 121 DGPLDMRMNPNYGISASEWLFESNVKEISFVLKNFGEERFSRKIAYAIKRRSQIKKITST 180

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+++I+KT+  +KN   HPA RSFQA+RI++N E+EE+ + L S  K LK GG + ++
Sbjct: 181 LELANIIKKTIP-TKNKFKHPARRSFQAIRIYINQELEEIQKALESTLKILKPGGRISII 239

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV---VVPTQEDVAFNRR 305
           SFHSLEDRLVKKF    S K +    M  +        +   K+   ++PTQ ++  N R
Sbjct: 240 SFHSLEDRLVKKFMIKNSTKAIIPYGMPITEEQLNRLTTCKLKIINRILPTQNEINNNPR 299

Query: 306 SRSAKLR 312
           +RS+ LR
Sbjct: 300 ARSSVLR 306


>gi|332210617|ref|XP_003254406.1| PREDICTED: probable S-adenosyl-L-methionine-dependent
           methyltransferase METT5D1 [Nomascus leucogenys]
          Length = 407

 Score =  219 bits (559), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 132/335 (39%), Positives = 189/335 (56%), Gaps = 38/335 (11%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H+PV++++V+  L+P  G++ LD TFG+GG++++         + ALDRDP A +  +  
Sbjct: 72  HIPVMVDEVVHCLSPRKGQIFLDMTFGSGGHTKAXXXXXXXXXLYALDRDPTAYALAEHL 131

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              Y +Q       FSQ +  +   GV     DGV+ DLG SSMQ+D  +RGFS +K GP
Sbjct: 132 SELYPKQIRAMLGQFSQAEALLMKAGVQPGTFDGVLMDLGCSSMQLDTPERGFSLRKDGP 191

Query: 133 LDMRMSCSGI----SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           LDMRM         +A+DVVN  + + L  IL   GEEK A +IA AIV+ R   P   T
Sbjct: 192 LDMRMDGGRYPDMPTAADVVNALDQQALASILRTYGEEKHAKKIASAIVQARSIYPITRT 251

Query: 189 QDLSSLIQ-----KTVYFSKN---NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           Q L+S++        +Y  K+      H AT++FQALRIFVNNE+ EL  GL++A+K L+
Sbjct: 252 QQLASIVAGAFPPSAIYARKDLLQRSTHIATKTFQALRIFVNNELNELYMGLKTAQKFLR 311

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKV---MAVRHMIPSNAH---------------- 281
            GG L+ +SFHSLEDR+VK+F    S      ++VR  +   +                 
Sbjct: 312 PGGRLVALSFHSLEDRIVKRFLLGISMTERFNLSVRQQVMKTSQLGSDYENTEEVSVRRA 371

Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           P +++ I KKV+ P  +DV  N R RSAKLRA ++
Sbjct: 372 PLMWELIHKKVLSPQDQDVQDNPRGRSAKLRAAIK 406


>gi|157112116|ref|XP_001657398.1| s-adenosyl-methyltransferase mraw [Aedes aegypti]
 gi|108878145|gb|EAT42370.1| s-adenosyl-methyltransferase mraw [Aedes aegypti]
          Length = 357

 Score =  219 bits (559), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 133/328 (40%), Positives = 184/328 (56%), Gaps = 31/328 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           HVPV+  + I  L P   ++ LD TFGAGG+++   K+  N  +IALDRDP A       
Sbjct: 28  HVPVMATETIKFLKPQDNELFLDMTFGAGGHTKEILKVAPNAKIIALDRDPTAHDMALAM 87

Query: 78  MRDYKEQFSLFQATFSQLQDY-----VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            + Y  Q       FS+L +      V  + +DG++FD G SSMQ D G RGFS  K+GP
Sbjct: 88  AKKYPGQIFPILGRFSELPEQLAKINVNQQSIDGIIFDFGCSSMQFDEGSRGFSISKNGP 147

Query: 133 LDMRMSCSGI----SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQT 187
           LDMRM         SA++++ + +  DL RIL I GEEKQA +IA AIV+ R S    +T
Sbjct: 148 LDMRMDQDRFPDTPSAAEILAKIDEVDLARILKIYGEEKQAKKIARAIVETRYSIKKIET 207

Query: 188 TQDLSSLIQKTV-----YFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
           T++L+ ++Q  +        K  R  HPAT++FQALRIFVNNE+ E+  G+  A++ LK 
Sbjct: 208 TKELADIVQSCLGSGSFRLDKLQRPSHPATKTFQALRIFVNNELNEINYGMILAQRYLKI 267

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMA-------------VRHMIPSNAHPAVFQSI 288
           GG +I ++FHSLED +VK+         MA               H +  N     +  +
Sbjct: 268 GGKMIAITFHSLEDTIVKRHVMGNVLNDMANTLPLKYCSHTISYEHDVMENVMKTSWHQM 327

Query: 289 TKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           TK VV+P  ++V  N RSRSAKLRA +R
Sbjct: 328 TKHVVLPGDDEVEQNPRSRSAKLRAVVR 355


>gi|319790660|ref|YP_004152293.1| S-adenosyl-methyltransferase MraW [Thermovibrio ammonificans HB-1]
 gi|317115162|gb|ADU97652.1| S-adenosyl-methyltransferase MraW [Thermovibrio ammonificans HB-1]
          Length = 295

 Score =  219 bits (559), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 123/306 (40%), Positives = 184/306 (60%), Gaps = 26/306 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77
           H PVLL++ + +L    G V +DAT G GG++ +  K    + VIA+DRD  A+    E 
Sbjct: 6   HPPVLLKESLKVLKAEEGGVFVDATLGGGGHTEAILKAHPENRVIAIDRDEEAIERAMER 65

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++ Y ++ S++ A FSQ+   +  +GV+   GV+FDLGVS   +  G+RGF+  K  PLD
Sbjct: 66  LKPYGDRVSIYHANFSQIDRVLQMEGVERVKGVLFDLGVSHFHLR-GERGFTVWKEQPLD 124

Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM  S  ++A +VVN+ + ++L RI+   GEEK A +IA  IVKRR+  P +TT +L+S
Sbjct: 125 MRMDRSQKLTAKEVVNELSERELARIIFRYGEEKFARKIASEIVKRRKRKPIETTTELAS 184

Query: 194 LIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           ++++ +        + HPA ++FQA+RI+VN E EE+  G+  A + ++ GG L V++FH
Sbjct: 185 IVEEVIPKKLWAGRKKHPAVKTFQAIRIYVNREFEEIETGIPKAAEFVEPGGRLAVITFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDRLVK    +  G                 F  +TKK +VPT+E+V  N  +RSAKL
Sbjct: 245 SLEDRLVKNILRNLEG-----------------FTPVTKKPIVPTEEEVVENPAARSAKL 287

Query: 312 RAGMRT 317
           RA  R 
Sbjct: 288 RAAERV 293


>gi|326402227|ref|YP_004282308.1| ribosomal RNA small subunit methyltransferase H [Acidiphilium
           multivorum AIU301]
 gi|325049088|dbj|BAJ79426.1| ribosomal RNA small subunit methyltransferase H [Acidiphilium
           multivorum AIU301]
          Length = 313

 Score =  219 bits (559), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 140/301 (46%), Positives = 186/301 (61%), Gaps = 9/301 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78
           HVPVL E+ +A+L P    V LD TFG GGYS S  +  S  V A+DRDP A++ G    
Sbjct: 7   HVPVLREEAVAMLAPRADGVYLDGTFGGGGYSASMLEAASCTVWAIDRDPAAIARGAALA 66

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
             Y ++  L +  F  L   + D+GV   DG VFD GVSS Q+D   RGFSF+  GPLDM
Sbjct: 67  ARYPDRLHLIEGRFGDLLALLRDRGVTALDGAVFDFGVSSYQLDDPSRGFSFRTDGPLDM 126

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RM  +G +A+D+VN     +L  IL   GEE+ + RIA AIV+RR + PF+TT DL+++I
Sbjct: 127 RMGAAGPTAADIVNGYAEAELADILFHFGEERASRRIAAAIVRRRAAQPFETTADLAAVI 186

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
            +TV     + I PATRSFQALRI VN E+ E+ + L +A   L  GG L+ VSFHSLED
Sbjct: 187 -RTVVRPDRSGIDPATRSFQALRIEVNQELAEIERALEAAASLLAPGGRLVAVSFHSLED 245

Query: 256 RLVKKFFASRSGKVMAVRHMIPSN----AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           R+VK+F  + +G V A     PS     A    F+++T+ VV P + + A N R+RSA+L
Sbjct: 246 RIVKRFMNAATGHVAAPSRHDPSGLARQAAAPRFRALTRGVVTPGEAETAANPRARSARL 305

Query: 312 R 312
           R
Sbjct: 306 R 306


>gi|302550804|ref|ZP_07303146.1| MraW methylase [Streptomyces viridochromogenes DSM 40736]
 gi|302468422|gb|EFL31515.1| MraW methylase [Streptomyces viridochromogenes DSM 40736]
          Length = 318

 Score =  219 bits (557), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 127/311 (40%), Positives = 188/311 (60%), Gaps = 12/311 (3%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74
           HVPV+L++ + LL PA   PG V++D T G GG+S +  +    + ++ALDRD  A+   
Sbjct: 6   HVPVMLQRCLDLLAPALEGPGPVVVDCTLGLGGHSEALLERFPEARLVALDRDKEALRLA 65

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            E +  Y E+ +L  A + +L + +   G   V GV+FDLGVSSMQ+D  DRGF++ +  
Sbjct: 66  GERLAPYGERATLVHAVYDELPEVLDKLGIRRVQGVLFDLGVSSMQLDEADRGFAYAQDA 125

Query: 132 PLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM   +G+SA++V+N     +L RIL   GEEKQA RI  AIV+ R+  PF  +  
Sbjct: 126 PLDMRMDQTTGVSAAEVLNTYPPGELVRILRAYGEEKQAKRIVAAIVREREKEPFSNSAR 185

Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  LI+  +   +K    +PA R+FQALRI VN E+  L + + +A +AL  GG + V+S
Sbjct: 186 LVELIRDALPQAAKRTGGNPAKRTFQALRIEVNGELAVLERAVPAAVEALDVGGRIAVLS 245

Query: 250 FHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           +HSLEDRLVK+ FA+ +         ++P    P   + +T+   +PT+E++A NRR+  
Sbjct: 246 YHSLEDRLVKQVFAAGAATTAPPGLPVVPERYQPR-LKLLTRGAELPTEEEIAENRRAAP 304

Query: 309 AKLRAGMRTVE 319
           A+LR   R  E
Sbjct: 305 ARLRGAQRIRE 315


>gi|302871361|ref|YP_003839997.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor obsidiansis
           OB47]
 gi|302574220|gb|ADL42011.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor obsidiansis
           OB47]
          Length = 307

 Score =  219 bits (557), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 126/307 (41%), Positives = 191/307 (62%), Gaps = 10/307 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
           +H+PVLLE+ +  L   P  + +DATFG GG+S+   +  SN   +IA+DRD  A+  G+
Sbjct: 3   EHMPVLLEESVFFLVTNPDGIYVDATFGLGGHSKRILEKLSNKGFLIAIDRDLEAIELGK 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +  +K    +  ++FS+L + +   G+   DG++FD GVSS+Q+D  +RGFS+ +   
Sbjct: 63  RKLEVHK-NVKIVHSSFSKLDEVLKGLGIEKIDGILFDFGVSSLQLDKQERGFSYNQEAF 121

Query: 133 LDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM + S ++A DVVN  + KDL RI+   GEE+ A RIA AIV+RR   P +TT +L
Sbjct: 122 LDMRMDTTSKLTAYDVVNFYSEKDLERIIREYGEERFARRIAKAIVERRSKKPIETTTEL 181

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           S+LI   V   K+   HPA R+FQA+RI VN+E++E+   L  + + L++GG +  +SFH
Sbjct: 182 SNLISSLVPRPKDGS-HPAQRTFQAIRIEVNSELDEIKIALEKSLRFLRSGGRICAISFH 240

Query: 252 SLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK+FF   S + +  + + I           ITKK + P++E++  N+RS SAK
Sbjct: 241 SLEDRIVKEFFKFHSLECVCPKDIPICVCGKKKELNIITKKPITPSKEEIEKNKRSHSAK 300

Query: 311 LRAGMRT 317
           LR   + 
Sbjct: 301 LRVAEKV 307


>gi|194213931|ref|XP_001918167.1| PREDICTED: similar to methyltransferase 5 domain containing 1
           [Equus caballus]
          Length = 401

 Score =  218 bits (556), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 131/331 (39%), Positives = 186/331 (56%), Gaps = 44/331 (13%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCGQET 77
           H+PV++E+V+  L P  G++ LD TFG+GG++R+  +  S++   ALDRDP A +  ++ 
Sbjct: 72  HIPVMVEEVVRCLAPQKGQIFLDMTFGSGGHTRAILQKESDITLYALDRDPTAYALAEQL 131

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              Y +Q       FSQ +  +   GV     DGV+ DLG SSMQ+D  +RGFS +K GP
Sbjct: 132 SELYPKQIRAMLGQFSQAEALLMKAGVQPETLDGVLLDLGCSSMQLDAPERGFSLRKDGP 191

Query: 133 LDMRMSCSGI----SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           LDMRM         +A+DVVN  + + L  IL   GEEK A +IA AIV+ R   P   T
Sbjct: 192 LDMRMDGGRYPDMPTAADVVNALDQQALASILRTYGEEKHAKKIASAIVQARSIYPITRT 251

Query: 189 QDLSSLIQ-----KTVYFSKN---NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           Q L+S++        +Y  K+      H AT++FQA RIFVN+E+ EL  GL++A+K L+
Sbjct: 252 QQLASIVAGAFPPSAIYARKDLLQRSTHIATKTFQAFRIFVNDELNELYTGLKTAQKFLR 311

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPS-----------NAH-------- 281
            GG L+ +SFHSLEDR+VK+F     G  MA R  + +           + H        
Sbjct: 312 PGGRLVALSFHSLEDRIVKRFLL---GISMAERFNLSARQKVIQSSQLGSGHKNKEGGSM 368

Query: 282 ---PAVFQSITKKVVVPTQEDVAFNRRSRSA 309
              P +++ I K+VV P   DV +N R RSA
Sbjct: 369 GRAPIMWELIHKRVVTPEDHDVEYNLRERSA 399


>gi|146295951|ref|YP_001179722.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|263446954|sp|A4XHZ6|RSMH_CALS8 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|145409527|gb|ABP66531.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 307

 Score =  218 bits (555), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 123/306 (40%), Positives = 189/306 (61%), Gaps = 10/306 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQ 75
           +H+PVLLE+  + L   P  + +DATFG GG+S+    K+ SN  ++A+D+D  A+  G+
Sbjct: 3   EHIPVLLEESTSYLVTKPDGIYVDATFGLGGHSKKILEKLSSNGFLVAIDKDEEAIELGK 62

Query: 76  ETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E  +       +  + FS+L +   ++    +DG++FDLGVSS+Q+D  +RGFS+     
Sbjct: 63  EKFKKCN-NIKIVHSPFSRLDEVLNFLKIDKIDGILFDLGVSSLQLDKPERGFSYNSDSF 121

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM   S ++A DVVN+ + K+L RI+   GEE+ A +IA  IVKRR+  P  TT++L
Sbjct: 122 LDMRMDKTSKLTAYDVVNKYSEKELERIIREYGEERYAKKIAKEIVKRREQKPITTTKEL 181

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI   V   K+   +PA R+FQA+RI VN E+EE+   L  + + LK+GG + V+SFH
Sbjct: 182 NDLINSVVPRPKDGS-NPAKRTFQAIRIEVNGELEEIKVALEKSIRFLKSGGRICVISFH 240

Query: 252 SLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK+FF   S + +  + + +           +TKK + PT+E++  N+RS SAK
Sbjct: 241 SLEDRIVKEFFKYHSLECICPKDIPVCVCGKKKELNILTKKPITPTKEEIERNKRSHSAK 300

Query: 311 LRAGMR 316
           LR   +
Sbjct: 301 LRVAEK 306


>gi|78043538|ref|YP_360897.1| S-adenosyl-methyltransferase MraW [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|88909191|sp|Q3AAD7|RSMH_CARHZ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|77995653|gb|ABB14552.1| S-adenosyl-methyltransferase MraW [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 311

 Score =  218 bits (555), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 130/302 (43%), Positives = 178/302 (58%), Gaps = 8/302 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78
           HVPVLL + I  LN   G V +DAT G GG+S    K     V+ LD+D  A++   + +
Sbjct: 5   HVPVLLNETIEHLNLKAGGVYVDATLGGGGHSEEILKRADCRVVGLDQDEDALNHAAKRL 64

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
             + ++F   ++ F  ++  V   G   VDGV+ DLGVSS Q+D   +GFSFQ  GPLDM
Sbjct: 65  APFGDRFIPVKSNFRNIRKVVYRLGLDAVDGVLMDLGVSSFQLDNPLKGFSFQHDGPLDM 124

Query: 136 RMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM      +A+DVVN    K+L RI    GEE+ A +IA AIVKRR+  PF +T +L+  
Sbjct: 125 RMDPQNPKTAADVVNTYPEKELIRIFYEYGEERYAPQIARAIVKRREKKPFTSTLELAEE 184

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           I + V        HPA R FQA+RI VN+E+  L +GL  A + LK GG ++V++FHSLE
Sbjct: 185 IIRAVPAKARREKHPAKRVFQAIRIEVNDELSSLEEGLVGAVEVLKPGGRIVVITFHSLE 244

Query: 255 DRLVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           DRLVK FF       +  +   M      P + + ITKK +VP++E++  NRR+ SAKLR
Sbjct: 245 DRLVKNFFRREENPCICPKDFPMCVCGKKPRL-KVITKKPLVPSEEEIEKNRRAHSAKLR 303

Query: 313 AG 314
           A 
Sbjct: 304 AA 305


>gi|57234909|ref|YP_181088.1| S-adenosyl-methyltransferase MraW [Dehalococcoides ethenogenes 195]
 gi|88909197|sp|Q3Z9L1|RSMH_DEHE1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|57225357|gb|AAW40414.1| S-adenosyl-methyltransferase MraW [Dehalococcoides ethenogenes 195]
          Length = 349

 Score =  218 bits (555), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 125/312 (40%), Positives = 189/312 (60%), Gaps = 20/312 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H+PV+LE+ I  L   PG   +D T GAGG+S +  +    G  ++++D DP A++   E
Sbjct: 6   HIPVMLEESIQGLGVIPGGRYVDCTLGAGGHSEAILEHSYPGGQLLSIDADPKAIALAAE 65

Query: 77  TMRDYKEQFSLFQATFSQLQD------YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            ++ +     L    F+ L+D      Y+P   V G++FDLG+SSMQ+D  + GFSFQ  
Sbjct: 66  RLKCFGSSVLLVNDNFANLKDICQRYEYMP---VHGILFDLGLSSMQLDREESGFSFQTE 122

Query: 131 GPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMR S    +SA+D+VN  ++  L+ ++   GEE  + RIA AI+++R   PF+TT 
Sbjct: 123 APLDMRFSPGQELSAADIVNTYDLAGLSDLIWKYGEEPFSRRIARAILEKR---PFKTTT 179

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           +L+S+I+K V   ++ RIHPATR+FQALRI VN E+  L   L  A+  L  GG L+V+S
Sbjct: 180 ELASVIEKAV-GGRHGRIHPATRTFQALRIAVNEELSHLESALAQAQSLLGHGGRLVVIS 238

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNA--HPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +HSLEDR+VK++F  +  K       IP     H    + I ++V+ P+ E+++ N RSR
Sbjct: 239 YHSLEDRIVKQYF-QKEAKGCICPDDIPQCVCNHKPSLRLINRRVITPSDEEISRNPRSR 297

Query: 308 SAKLRAGMRTVE 319
           SAK+R   R ++
Sbjct: 298 SAKMRVAERIIQ 309


>gi|75675236|ref|YP_317657.1| methyltransferase [Nitrobacter winogradskyi Nb-255]
 gi|88909206|sp|Q3STT6|RSMH_NITWN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|74420106|gb|ABA04305.1| methyltransferase [Nitrobacter winogradskyi Nb-255]
          Length = 332

 Score =  218 bits (555), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 141/323 (43%), Positives = 193/323 (59%), Gaps = 7/323 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQETM 78
           HVPVL  + +A+L P  G V +DATFGAGGYSR+      + VI +DRDP A++ G   +
Sbjct: 8   HVPVLGREAVAMLAPRAGGVYVDATFGAGGYSRAILATAETRVIGIDRDPTAIAGGSGLV 67

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV---SSMQIDCGDRGFSFQKSGPLDM 135
            +   +  L +  FS L      +    V   +     SSMQ+D   RGFSF+  GPLDM
Sbjct: 68  EESGGRLILVEDRFSHLAAVCAAQDAAAVDGVVMDVGVSSMQLDEAGRGFSFRLDGPLDM 127

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RMS  G +A++VV +A+  DL  I+ I GEE+++  +A AIV  R+  P  TT+ L+ ++
Sbjct: 128 RMSGHGPTAAEVVARASETDLADIIYIFGEERRSRAVARAIVGARRHGPIATTRALADIV 187

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
            K V  +K + IHPATR+FQALRIFVN E++EL   L +AE+ LK GG L VVSFHSLED
Sbjct: 188 SKVVR-AKPHEIHPATRTFQALRIFVNEELDELIAALAAAERVLKPGGRLAVVSFHSLED 246

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           R+VK F A R       RH       P  F  +TK+ + P  ++V  N R+RSA+LRA  
Sbjct: 247 RIVKNFLAWRGKTGGGSRHRPEIERAPPSFAILTKRPLTPGDDEVQANPRARSARLRAAE 306

Query: 316 RTVERSIEDDSFVHLPRLPTLSQ 338
           RT   +I+D +   LP  P+L+ 
Sbjct: 307 RTDAAAIDDGA--ELPAWPSLAN 327


>gi|119469206|ref|ZP_01612190.1| S-adenosyl-methyltransferase MraW [Alteromonadales bacterium TW-7]
 gi|119447458|gb|EAW28726.1| S-adenosyl-methyltransferase MraW [Alteromonadales bacterium TW-7]
          Length = 312

 Score =  218 bits (554), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 128/310 (41%), Positives = 190/310 (61%), Gaps = 17/310 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYS-RSFCKMGS--NVIALDRDPFAVSCGQ 75
           +HV VL+++ I  L   P  + +D TFG GG+S +   ++G    + A+D+DP A+   +
Sbjct: 6   EHVSVLMDETIDALAIKPDGIYMDGTFGRGGHSGQILARLGDAGRLQAIDQDPQAIKSAE 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +   D +  F++    FS+L D          VDG++ D+GVSS Q+D  +RGFSF K G
Sbjct: 66  KFADDSR--FAIAHTRFSKLYDVAEQNDLIGKVDGILLDIGVSSPQLDDAERGFSFMKDG 123

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM   SG SA+  + +A + D+T ++  LGEEK   RIAH I++ R+  P  TT+ 
Sbjct: 124 PLDMRMDPTSGRSAAQWLAEAELDDITHVIKKLGEEKFGKRIAHKILETREHTPITTTKQ 183

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ L+ + V   K+   HPATR+FQA+RI++N+E+EE+   L+SA K LK GG L+V+SF
Sbjct: 184 LADLVDEAVPV-KDKFKHPATRTFQAIRIYINSELEEIQTALQSAVKVLKPGGRLVVISF 242

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV----VPTQEDVAFNRRS 306
           HSLEDR+VK+F   +S      R +  ++A   + Q++T K V     P+ E+VA N RS
Sbjct: 243 HSLEDRIVKQFIRKQSKGEALPRGLPLTDAQ--INQNLTLKAVGKAIKPSTEEVARNPRS 300

Query: 307 RSAKLRAGMR 316
           RS+ LR   R
Sbjct: 301 RSSVLRVAQR 310


>gi|290961148|ref|YP_003492330.1| SAM-dependent methyltransferase [Streptomyces scabiei 87.22]
 gi|260650674|emb|CBG73790.1| putative SAM-dependent methyltransferase [Streptomyces scabiei
           87.22]
          Length = 318

 Score =  218 bits (554), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 129/312 (41%), Positives = 187/312 (59%), Gaps = 14/312 (4%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74
           HVPV+L++ + +L PA   PG V++D T G GG+S +       + ++ALDRD  A+   
Sbjct: 6   HVPVMLQRCLDMLAPALTEPGAVVVDCTLGLGGHSEALLTRFPEARLVALDRDKEALRLS 65

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            E +  + E+ +L  A + +L + +   G   V GV+FDLGVSSMQ+D  DRGF++ +  
Sbjct: 66  GERLAPFGERATLVHAVYDELPEVLDRLGLPRVQGVLFDLGVSSMQLDEADRGFAYAQDA 125

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM   +GI A++V+N     +L RIL   GEEKQA RI  AIV+ R   PF  +  
Sbjct: 126 PLDMRMDQTTGIGAAEVLNTYPAGELVRILRAYGEEKQAKRIVSAIVRERDKEPFTNSAR 185

Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  LI+ ++   +K    +PA R+FQALRI VN E+  L + + +A KAL  GG + V+S
Sbjct: 186 LVELIRDSLPQAAKRTGGNPAKRTFQALRIEVNGELTVLERAVPAAVKALAVGGRIAVLS 245

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +HSLEDRLVK+ FA+    V A   +  +P    P   + +T+   +PT+E+VA NRR+ 
Sbjct: 246 YHSLEDRLVKQVFAA-GAAVTAPPGLPVVPERYQPR-LKLLTRGAELPTEEEVAENRRAA 303

Query: 308 SAKLRAGMRTVE 319
            A+LR   R  E
Sbjct: 304 PARLRGAERVRE 315


>gi|148259076|ref|YP_001233203.1| S-adenosyl-methyltransferase MraW [Acidiphilium cryptum JF-5]
 gi|263433381|sp|A5FUK2|RSMH_ACICJ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|146400757|gb|ABQ29284.1| S-adenosyl-methyltransferase MraW [Acidiphilium cryptum JF-5]
          Length = 313

 Score =  218 bits (554), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 139/301 (46%), Positives = 185/301 (61%), Gaps = 9/301 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78
           HVPVL E+ +A+L P    V LD TFG GGYS S  +  S  V A+DRDP A++ G    
Sbjct: 7   HVPVLREEAVAMLAPRADGVYLDGTFGGGGYSASMLEAASCTVWAIDRDPAAIARGAALA 66

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
             Y ++  L +  F  L   + D+GV   DG VFD GVSS Q+D   RGFSF+  GPLDM
Sbjct: 67  ARYPDRLHLIEGRFGDLLALLRDRGVTALDGAVFDFGVSSYQLDDPSRGFSFRTDGPLDM 126

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RM  +G +A+D+VN     +L  IL   GEE+ + RIA AIV+RR + PF+TT DL+++I
Sbjct: 127 RMGAAGPTAADIVNGYAEAELADILFHFGEERASRRIAAAIVRRRAAQPFETTADLAAVI 186

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
            +TV     + I PATRSFQALRI VN E+ E+ + L +A   L  GG L+ VSFHSLED
Sbjct: 187 -RTVVRPDRSGIDPATRSFQALRIEVNQELAEIERALEAAASLLAPGGRLVAVSFHSLED 245

Query: 256 RLVKKFFASRSGKVMAVRHMIPSN----AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           R+VK+F  + +G V A     PS     A    F+++T+ VV P + +   N R+RSA+L
Sbjct: 246 RIVKRFMNAATGHVAAPSRHDPSGLARQAAAPRFRALTRGVVTPGEAETVANPRARSARL 305

Query: 312 R 312
           R
Sbjct: 306 R 306


>gi|158316863|ref|YP_001509371.1| S-adenosyl-methyltransferase MraW [Frankia sp. EAN1pec]
 gi|263447093|sp|A8KZA9|RSMH_FRASN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|158112268|gb|ABW14465.1| S-adenosyl-methyltransferase MraW [Frankia sp. EAN1pec]
          Length = 327

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 130/309 (42%), Positives = 187/309 (60%), Gaps = 12/309 (3%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCG 74
           H PVL E+VI LL+PA   PG V++DAT G GG+S +  +    V  I LDRD  A+   
Sbjct: 5   HTPVLTERVIQLLDPALRRPGAVVVDATVGLGGHSHALLEAFPQVRLIGLDRDTTALEHS 64

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +  +    ++  L  A + QL D +   GV   DGV+FDLGVSSMQ+D  +RGF++ +  
Sbjct: 65  RRRLTGLGDRVDLEHAVYDQLPDVLDRLGVPSVDGVLFDLGVSSMQLDLDERGFAYSRDA 124

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM    G +A+DV+N  +V  LTR+L   GEE+ A RIA A+V +RQ+APF T+  
Sbjct: 125 PLDMRMDQERGPTAADVLNNYDVDALTRVLREYGEERFARRIARAVVTQRQAAPFTTSAR 184

Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  L++ ++   ++    +PA R+FQALRI VN+E+E L + + +A  AL   G L+V+S
Sbjct: 185 LVDLVRDSIPAAARRTGGNPAKRTFQALRIEVNSELEVLERAVPAAFDALAVAGRLVVLS 244

Query: 250 FHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           +HSLEDRLVK+    RS   V     +IP +A P   + +T+     +  ++  N R+ S
Sbjct: 245 YHSLEDRLVKRVLMPRSVPSVPPDMPVIPDDARP-TLRWLTRGAEPASDTEIEQNARAGS 303

Query: 309 AKLRAGMRT 317
            +LRA  RT
Sbjct: 304 VRLRAAERT 312


>gi|73988949|ref|XP_534100.2| PREDICTED: similar to methyltransferase 5 domain containing 1
           [Canis familiaris]
          Length = 694

 Score =  217 bits (553), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 129/335 (38%), Positives = 194/335 (57%), Gaps = 38/335 (11%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCGQET 77
           H+PV++++V+  L P  G++ LD TFG+GG++R+  +  S++   ALDRDP A +  ++ 
Sbjct: 359 HIPVMVDEVVRCLAPQKGQIFLDMTFGSGGHTRAILQKESDITLYALDRDPTAYAIAEQL 418

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              Y +Q       FSQ +  +   GV     DGV+ D G SSMQ+D  +RGFS +K GP
Sbjct: 419 SELYPKQIRALLGQFSQAEALLMKAGVQPGTLDGVLLDPGCSSMQLDAPERGFSLRKDGP 478

Query: 133 LDMRMSCSGI----SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           LDMRM         +A+DVVN  + + L  IL   GEEK A +IA AIV+ R   P   T
Sbjct: 479 LDMRMDGGRYPDMPTAADVVNALDQQALASILRTYGEEKHAKKIASAIVQARSLYPISRT 538

Query: 189 QDLSSLI----QKTVYFSKNNRI----HPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           Q L+S++      +  F++ + +    H AT++FQA RIFVNNE+ EL  GL++A+K L+
Sbjct: 539 QQLASIVAGAFPPSAVFARKDLLQRSTHIATKTFQAFRIFVNNELNELYTGLKTAQKFLR 598

Query: 241 AGGLLIVVSFHSLEDRLVKKF-----------FASRSGKVMAVR--------HMIPSNAH 281
            GG L+ +SFHSLEDR+VK+F            ++R   + A++             +  
Sbjct: 599 PGGRLVALSFHSLEDRIVKRFLLGISMTERFNLSARQKVIQALKLGSGRENMEGASISKA 658

Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           P +++ I KKV+ P  ++V  N R+RSAKLRA ++
Sbjct: 659 PLMWELIHKKVLTPDDQEVQENPRARSAKLRAAIK 693


>gi|73748191|ref|YP_307430.1| S-adenosyl-methyltransferase MraW [Dehalococcoides sp. CBDB1]
 gi|147668966|ref|YP_001213784.1| S-adenosyl-methyltransferase MraW [Dehalococcoides sp. BAV1]
 gi|289432241|ref|YP_003462114.1| S-adenosyl-methyltransferase MraW [Dehalococcoides sp. GT]
 gi|88909198|sp|Q3ZZA4|RSMH_DEHSC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446194|sp|A5FSB7|RSMH_DEHSB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|73659907|emb|CAI82514.1| S-adenosyl-methyltransferase MraW [Dehalococcoides sp. CBDB1]
 gi|146269914|gb|ABQ16906.1| S-adenosyl-methyltransferase MraW [Dehalococcoides sp. BAV1]
 gi|288945961|gb|ADC73658.1| S-adenosyl-methyltransferase MraW [Dehalococcoides sp. GT]
          Length = 349

 Score =  217 bits (553), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 128/332 (38%), Positives = 194/332 (58%), Gaps = 27/332 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H+PV+LE+ I  L   PG   +D T GAGG+S +  +    G  ++++D DP A++   E
Sbjct: 6   HIPVMLEESIQGLGVIPGGRYVDCTLGAGGHSEAILEHSYPGGQLLSIDADPSAITLAAE 65

Query: 77  TMRDYKEQFSLFQATFSQLQD------YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            ++ +     L    F+ L+D      Y+P   V G++FDLG+SSMQ+D  + GFSFQ  
Sbjct: 66  RLKSFGSSVLLVNDNFANLKDICQRYEYMP---VHGILFDLGLSSMQLDRQESGFSFQTE 122

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMR S    ++A+D++N  +V +L+ ++   GEE  + RIA AI ++R   PF+TT 
Sbjct: 123 APLDMRFSPEQELTAADIINGYDVTELSDLIWKYGEEPFSRRIARAIAEKR---PFKTTT 179

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           +L++ I++ V   ++ RIHPATR+FQALRI VN E+  L   L  A   L  GG L+V+S
Sbjct: 180 ELAAAIERAV-GGRHGRIHPATRTFQALRIAVNEELSHLESALSQAHSLLGHGGRLVVIS 238

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNA--HPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +HSLEDR+VK++F  +  K       IP     H    + I ++V+ P+ E+++ N RSR
Sbjct: 239 YHSLEDRIVKQYF-QKEAKGCICPDDIPQCVCDHQPSLRIINRRVITPSDEEISRNPRSR 297

Query: 308 SAKLRAGMRTVE-------RSIEDDSFVHLPR 332
           SAK+R   R +E        S ED+   H+ R
Sbjct: 298 SAKMRVAERIIEPGEGRFFSSREDELVNHVSR 329


>gi|99034246|ref|ZP_01314308.1| hypothetical protein Wendoof_01000895 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 314

 Score =  217 bits (553), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 127/323 (39%), Positives = 188/323 (58%), Gaps = 39/323 (12%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78
           H PVLL+++++LL+P  G + +DATFGAGGYS++  +     V A+DRD        +  
Sbjct: 3   HTPVLLKEMLSLLSPQDGGIYVDATFGAGGYSKAILESADCKVYAIDRDETVTKFYDDLS 62

Query: 79  RDYKEQFSLFQATFSQLQDYV------------------------PDKGVDGVVFDLGVS 114
             Y ++  LF   FS ++  +                           GVDGVVFD+GVS
Sbjct: 63  VRYPDRIKLFIEKFSNIKSILSSVKPSPVIPVLDTGKNNWSRAGMTSNGVDGVVFDIGVS 122

Query: 115 SMQIDCGDRGFSFQKSGPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIA 173
           SMQ+D GDRGFSF   GPLDM M + S I+AS  VN    +++   +   G E+ + +IA
Sbjct: 123 SMQLDNGDRGFSFLHDGPLDMSMDNSSYINASTFVNALREEEIANTIYNYGGERHSRKIA 182

Query: 174 HAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLR 233
            AI+  R+    +TT +L+ ++ ++V F   ++I PATR+FQA+RI+VN+E+EEL +G++
Sbjct: 183 RAIINARKKKTIKTTFELADIV-RSVVFRGKSKIDPATRTFQAIRIWVNDELEELEKGIK 241

Query: 234 SAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV 293
           +A + L   G LIVV+FHSLEDR+VK FF          + +  ++     F  + KKV+
Sbjct: 242 AASEILSENGKLIVVTFHSLEDRIVKTFF----------KDLCATDCK--TFSLLNKKVI 289

Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316
             + E+V+ N RSRSAKLRA  R
Sbjct: 290 EASIEEVSANPRSRSAKLRAIQR 312


>gi|242278175|ref|YP_002990304.1| S-adenosyl-methyltransferase MraW [Desulfovibrio salexigens DSM
           2638]
 gi|263446206|sp|C6BYH4|RSMH_DESAD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|242121069|gb|ACS78765.1| S-adenosyl-methyltransferase MraW [Desulfovibrio salexigens DSM
           2638]
          Length = 324

 Score =  217 bits (553), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 130/312 (41%), Positives = 181/312 (58%), Gaps = 13/312 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VLL +VI  L P PG   LD T G  G+S +  K+   G+ +  LDRD  A+    E
Sbjct: 12  HTSVLLNEVIEWLAPKPGGRYLDGTLGMAGHSSAILKIAGEGAELAGLDRDEQALELAGE 71

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  + ++   F   FS+ +  + + G   VDGVV DLGVSS+ +D  +RGFSF K GPL
Sbjct: 72  RLAPFGDRAHRFHLAFSKFEAALDELGWDTVDGVVLDLGVSSLHLDHAERGFSFIKDGPL 131

Query: 134 DMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           DMRM  +G    AS +VN+ +  DL RIL + GEE  AS+I  AI+  R+     TT  L
Sbjct: 132 DMRMDPAGGMPPASSIVNKGSYSDLNRILKLYGEEPLASKITKAIIAAREEEKITTTLQL 191

Query: 192 SSLIQKTVYFSKN---NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +S+++K  Y +K    +R HPAT++FQ LRI VN+E+EEL   L    + L  G  + ++
Sbjct: 192 ASIVEK-AYPAKRRALSRTHPATKTFQGLRIAVNSELEELKTFLDRIPERLSPGARVAII 250

Query: 249 SFHSLEDRLVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           SFHSLEDR+VKK F ++S          I +     +   +T+K V+PT+E++  N RSR
Sbjct: 251 SFHSLEDRIVKKTFKAQSQSCDCPPMQPICTCGKVKLMNVLTRKPVLPTEEEMKVNTRSR 310

Query: 308 SAKLRAGMRTVE 319
           SAKLR   RT E
Sbjct: 311 SAKLRVAERTGE 322


>gi|42520071|ref|NP_965986.1| S-adenosyl-methyltransferase MraW [Wolbachia endosymbiont of
           Drosophila melanogaster]
 gi|88912336|sp|P62478|RSMH_WOLPM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|42409808|gb|AAS13920.1| S-adenosyl-methyltransferase MraW [Wolbachia endosymbiont of
           Drosophila melanogaster]
          Length = 314

 Score =  217 bits (553), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 127/323 (39%), Positives = 188/323 (58%), Gaps = 39/323 (12%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78
           H PVLL+++++LL+P  G + +DATFGAGGYS++  +     V A+DRD        +  
Sbjct: 3   HTPVLLKEMLSLLSPQDGGIYVDATFGAGGYSKAILESADCKVYAIDRDETVTKFYDDLS 62

Query: 79  RDYKEQFSLFQATFSQLQDYV------------------------PDKGVDGVVFDLGVS 114
             Y ++  LF   FS ++  +                           GVDGVVFD+GVS
Sbjct: 63  VRYPDRIKLFIEKFSNIKSILSSVEPSPVIPVLDTGKNNWSRAGMTSNGVDGVVFDIGVS 122

Query: 115 SMQIDCGDRGFSFQKSGPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIA 173
           SMQ+D GDRGFSF   GPLDM M + S I+AS  VN    +++   +   G E+ + +IA
Sbjct: 123 SMQLDNGDRGFSFLHDGPLDMSMDNSSYINASTFVNALREEEIANTIYNYGGERHSRKIA 182

Query: 174 HAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLR 233
            AI+  R+    +TT +L+ ++ ++V F   ++I PATR+FQA+RI+VN+E+EEL +G++
Sbjct: 183 RAIINARKKKTIKTTFELADIV-RSVVFRGKSKIDPATRTFQAIRIWVNDELEELEKGIK 241

Query: 234 SAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV 293
           +A + L   G LIVV+FHSLEDR+VK FF          + +  ++     F  + KKV+
Sbjct: 242 AASEILSENGKLIVVTFHSLEDRIVKTFF----------KDLCATDCK--TFSLLNKKVI 289

Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316
             + E+V+ N RSRSAKLRA  R
Sbjct: 290 EASIEEVSANPRSRSAKLRAIQR 312


>gi|297199072|ref|ZP_06916469.1| MraW methylase [Streptomyces sviceus ATCC 29083]
 gi|197715975|gb|EDY60009.1| MraW methylase [Streptomyces sviceus ATCC 29083]
          Length = 318

 Score =  217 bits (553), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 128/311 (41%), Positives = 187/311 (60%), Gaps = 12/311 (3%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74
           HVPV+L++ + LL PA   PG V++D T G GG+S +  +    + +IALDRD  A+   
Sbjct: 6   HVPVMLQRCLDLLAPALERPGSVVVDCTLGLGGHSEALLQRFPEARLIALDRDKEALRLS 65

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            E +  + E+ +L  A + +L D +   G   V GV+FDLGVSSMQ+D  DRGF++ +  
Sbjct: 66  GERLAPFGERATLVHAVYDELPDVLDRLGIARVQGVLFDLGVSSMQLDEADRGFAYAQDA 125

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM   +G+SA++V+N     +L RIL   GEEKQA RI  AIV+ R   PF  +  
Sbjct: 126 PLDMRMDQTTGMSAAEVLNTYPAGELVRILRAYGEEKQAKRIVSAIVRERDKEPFTNSAR 185

Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  LI+ ++   +K    +PA R+FQALRI VN E+  L + + +A KAL  GG + V+S
Sbjct: 186 LVELIRDSLPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVKALAVGGRIAVLS 245

Query: 250 FHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           +HSLEDRLVK+ FA+ +         ++P    P   + +T+   +PT+E++A NRR+  
Sbjct: 246 YHSLEDRLVKQVFAAGAATTAPPGLPVVPERYQPR-LKLLTRGAELPTEEEIAENRRAAP 304

Query: 309 AKLRAGMRTVE 319
           A+ R   R  E
Sbjct: 305 ARCRGAERIRE 315


>gi|269958801|ref|YP_003328589.1| S-adenosyl-methyltransferase [Anaplasma centrale str. Israel]
 gi|269848631|gb|ACZ49275.1| S-adenosyl-methyltransferase [Anaplasma centrale str. Israel]
          Length = 291

 Score =  217 bits (552), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 130/303 (42%), Positives = 182/303 (60%), Gaps = 20/303 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQETM 78
           H PVLL +V+  L+P  GK+ +DATFG GGYSR   +M    V A+D+D        E +
Sbjct: 3   HKPVLLNEVMETLSPQDGKIYIDATFGGGGYSRKMLEMARCAVYAIDQDITVKEYFDELL 62

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           + +  + SL  + FS+L++ +   G   VDG+VFDLG S+MQ+    RGFSF KSG LDM
Sbjct: 63  QSFPGRLSLAISKFSRLREVMLSFGINRVDGIVFDLGTSAMQLADPSRGFSFMKSGSLDM 122

Query: 136 RM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM S S  +A+  VN    K++  I+   G E+++ ++A AIV  RQ     +T+DL+ +
Sbjct: 123 RMCSSSQRNAALFVNTVLEKEMADIIYHYGGERRSRKVARAIVDARQKRKINSTEDLAEI 182

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           I+  V  S+ + I PATR+FQA+RI+VNNE+EEL  GL +A K L+ GG ++V SFHSLE
Sbjct: 183 IRSVVPRSRVHPIDPATRTFQAIRIWVNNELEELQAGLEAASKLLRVGGKILVTSFHSLE 242

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           DR+VK+ F S                    F  + KK + PT E++  N RSRS KLRA 
Sbjct: 243 DRVVKQKFKSLCD---------------MGFSLVNKKAIRPTDEEIRDNPRSRSGKLRAI 287

Query: 315 MRT 317
           +R 
Sbjct: 288 VRV 290


>gi|291440170|ref|ZP_06579560.1| S-adenosylmethionine-dependent methyltransferase [Streptomyces
           ghanaensis ATCC 14672]
 gi|291343065|gb|EFE70021.1| S-adenosylmethionine-dependent methyltransferase [Streptomyces
           ghanaensis ATCC 14672]
          Length = 318

 Score =  217 bits (552), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 127/311 (40%), Positives = 187/311 (60%), Gaps = 12/311 (3%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74
           HVPV+L++ + LL PA   PG V++D T G GG+S +  +    + ++ALDRD  A+   
Sbjct: 6   HVPVMLQRCLDLLAPALERPGAVVVDCTLGLGGHSEALLRRFPEARLVALDRDKEALRLS 65

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            E +  + E+ +L  A + +L D +   GV    GV+FDLGVSSMQ+D  DRGF++ +  
Sbjct: 66  GERLAPFGERATLVHAVYDELPDVLARLGVPRVQGVLFDLGVSSMQLDEADRGFAYAQDA 125

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM   +G+SA++V+N     +L RIL   GEEKQA RI  AIV+ R+  PF  +  
Sbjct: 126 PLDMRMDQTAGVSAAEVLNTYPPGELVRILRAYGEEKQAKRIVAAIVREREKEPFTRSAR 185

Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  LI+  +   +K    +PA R+FQALRI VN E+  L + + +A KAL   G + V+S
Sbjct: 186 LVELIRDALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVKALDVDGRIAVLS 245

Query: 250 FHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           +HSLEDRLVK+ FA+ +         ++P    P   + +T+   +PT+E++A NRR+  
Sbjct: 246 YHSLEDRLVKQVFAAGAATTAPPGLPVVPERYQPR-LKLLTRGAELPTEEEIAENRRAAP 304

Query: 309 AKLRAGMRTVE 319
           A+LR   R  E
Sbjct: 305 ARLRGAQRIRE 315


>gi|29832656|ref|NP_827290.1| S-adenosylmethionine-dependent methyltransferase [Streptomyces
           avermitilis MA-4680]
 gi|42559459|sp|Q82AE4|RSMH_STRAW RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|29609776|dbj|BAC73825.1| putative S-adenosylmethionine-dependent methyltransferase
           [Streptomyces avermitilis MA-4680]
          Length = 318

 Score =  217 bits (552), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 126/311 (40%), Positives = 188/311 (60%), Gaps = 12/311 (3%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74
           HVPV+L++ + +L PA   PG V++D T G GG+S +       + ++ALDRD  A+   
Sbjct: 6   HVPVMLQRCLDMLAPALTEPGAVVVDCTLGLGGHSEALLTQFPEARLVALDRDKEALRLS 65

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            E +  + ++ +L  A + +L D +   GV    GV+FDLGVSSMQ+D  DRGF++ +  
Sbjct: 66  GERLAPFGDRATLVHAVYDELPDVLDRLGVPRVQGVLFDLGVSSMQLDEADRGFAYAQDA 125

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM   +GISA++V+N     ++ RIL   GEEKQA RI  AIV+ R+  PF  +  
Sbjct: 126 PLDMRMDQTTGISAAEVLNTYPPGEIVRILRAYGEEKQAKRIVSAIVREREKEPFSNSAR 185

Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  LI+ ++   +K    +PA R+FQALRI VN E+  L + + +A KAL  GG + V+S
Sbjct: 186 LVELIRDSLPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVKALAVGGRIAVLS 245

Query: 250 FHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           +HSLEDRLVK+ FA+ +         ++P    P   + +T+   +PT+E++A NRR+  
Sbjct: 246 YHSLEDRLVKQVFAAGAATTAPPGLPVVPERYQPR-LKLLTRGAELPTEEEIAENRRAAP 304

Query: 309 AKLRAGMRTVE 319
           A+LR   R  E
Sbjct: 305 ARLRGAQRIRE 315


>gi|291229752|ref|XP_002734836.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii]
          Length = 377

 Score =  216 bits (551), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 128/335 (38%), Positives = 183/335 (54%), Gaps = 30/335 (8%)

Query: 12  AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPF 69
            +H     H+PV+L+ V+   +P   +V +D TFGAGG+S    K   N+   ALDRDP 
Sbjct: 41  TVHSNEQLHIPVMLDDVLDFFSPEKNQVYIDMTFGAGGHSSEILKCAENITMYALDRDPL 100

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQL-----QDYVPDKGVDGVVFDLGVSSMQIDCGDRG 124
           A+   ++    +  +    +  FS++     Q  V    VDGV+ D G SSMQ+D  +RG
Sbjct: 101 ALDIAKQLSGLHGNRIIPLEGKFSEITRLLDQHDVGLNSVDGVLLDAGCSSMQMDTAERG 160

Query: 125 FSFQKSGPLDMRMSCS----GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           FS  K GPLDMRM         +A+DVVN  +  DL +I+   GEEK A +IA +IV+ R
Sbjct: 161 FSISKDGPLDMRMDSDRDPKQPTAADVVNALSEADLAKIIRTYGEEKHARKIARSIVEYR 220

Query: 181 QSA-PFQTTQDLSSLIQKTVYFSKNNR--------IHPATRSFQALRIFVNNEIEELAQG 231
            +  P  TT++ + ++       +  +        +H AT++FQALRIFVNNE+ EL  G
Sbjct: 221 TTWQPITTTKEFAYVVSCAFSHREAKKQKDKLRRPVHTATKTFQALRIFVNNELNELVMG 280

Query: 232 LRSAEKALKAGGLLIVVSFHSLEDRLVKKFF----------ASRSGKVMAVRHMIPSNAH 281
           L   EK LK GG L V++FHSLEDR+VK+F            S   K+   R     +  
Sbjct: 281 LEQVEKILKPGGKLAVITFHSLEDRIVKRFLRGIDYSEKYSMSIGEKMRENRTRDGDDNR 340

Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           P  ++ I KKV+ P +ED+  N R+RSAKLR  ++
Sbjct: 341 PQRWKEINKKVLEPLEEDIIDNPRARSAKLRTAVK 375


>gi|297194883|ref|ZP_06912281.1| S-adenosylmethionine-dependent methyltransferase [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297152504|gb|EFH31797.1| S-adenosylmethionine-dependent methyltransferase [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 318

 Score =  216 bits (551), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 126/311 (40%), Positives = 186/311 (59%), Gaps = 12/311 (3%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74
           HVPV+L++ + +L PA   PG V++D T G GG+S +  +    + ++ALDRD  A+   
Sbjct: 6   HVPVMLQRCLDMLAPALRTPGGVVVDCTLGLGGHSEALLEQFPQTRLVALDRDTEALRLS 65

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            E +  + E+ +L  A + +L D +   G   V GV+FDLGVSSMQ+D  DRGF++ +  
Sbjct: 66  GERLARFGERATLVHAVYDELPDVLDRLGIPRVQGVLFDLGVSSMQLDEADRGFAYAQDA 125

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM   +G+SA++V+N     +L RIL   GEEKQA RI  AIV+ R+  PF  +  
Sbjct: 126 PLDMRMDQTTGMSAAEVLNTYPPGELVRILRAYGEEKQAKRIVSAIVREREKEPFTNSAR 185

Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  LI+  +   +K    +PA R+FQALRI VN E+  L + + +A  AL  GG + V+S
Sbjct: 186 LVELIRDALPQAAKRTGGNPAKRTFQALRIEVNGELAVLERAVPAAVSALAVGGRIAVLS 245

Query: 250 FHSLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           +HSLEDRLVK+ FA+ +         ++P    P   + +T+   +PT E++A NRR+  
Sbjct: 246 YHSLEDRLVKQVFAAGAANTAPPGLPVVPEQYQPR-LKLLTRGAELPTDEEIAENRRAAP 304

Query: 309 AKLRAGMRTVE 319
           A+LR   R  E
Sbjct: 305 ARLRGAERIRE 315


>gi|127514389|ref|YP_001095586.1| S-adenosyl-methyltransferase MraW [Shewanella loihica PV-4]
 gi|262826527|sp|A3QIM9|RSMH_SHELP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|126639684|gb|ABO25327.1| S-adenosyl-methyltransferase MraW [Shewanella loihica PV-4]
          Length = 313

 Score =  216 bits (549), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 126/308 (40%), Positives = 181/308 (58%), Gaps = 15/308 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76
           H+ VLL + +A LN  P  + +D TFG GG+SR   K +G N  +IA+DRDP A++  ++
Sbjct: 7   HLSVLLTETVAGLNIKPEGIYIDGTFGRGGHSREVLKQLGPNGRLIAIDRDPQAIAAAEQ 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              D +  FS+    F QL  YV D G    +DG++FD GVSS Q+D  +RGFSF + GP
Sbjct: 67  FADDAR--FSIVHGGFGQLAQYVDDLGLRGKIDGILFDFGVSSPQLDDAERGFSFLRDGP 124

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G +A++ + +A ++D+  +    GEEK A  IA  I   R   PF  T++L
Sbjct: 125 LDMRMDNSQGETAAEWLARAEIEDMAWVFKTYGEEKNARHIARCIAADRDKTPFLRTKEL 184

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI + V  SK    HPATR FQA+RI++N+E+E++ Q L  A   L   G L V+SFH
Sbjct: 185 ADLIAR-VSKSKERNKHPATRVFQAIRIYINSELEQIDQALEGAVTVLAPQGRLSVISFH 243

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP---SNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SLEDR+VK+F   R  +  +V H +P   +  +         K + P+ E++  N R+RS
Sbjct: 244 SLEDRMVKRFI-RRHSQGESVPHGLPLTEAEINKTRLLKAVGKAIKPSAEEIDRNARARS 302

Query: 309 AKLRAGMR 316
           + LR   R
Sbjct: 303 SVLRVAER 310


>gi|312134653|ref|YP_004001991.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor owensensis
           OL]
 gi|311774704|gb|ADQ04191.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor owensensis
           OL]
          Length = 307

 Score =  216 bits (549), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 123/307 (40%), Positives = 191/307 (62%), Gaps = 10/307 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
           +H+PVLLE+ +  L   P  + +DATFG GG+S+   +  S+   +IA+DRD  A+  G+
Sbjct: 3   EHIPVLLEESVFFLVTNPDGIYVDATFGLGGHSKRILEKLSDKGFLIAIDRDLEAIELGK 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             ++ +K    +  ++FS++ + +   G+   DG++FD GVSS+Q+D  +RGFS+ K   
Sbjct: 63  RKLKVHK-NVKIVHSSFSKVDEVLKGLGIEKIDGILFDFGVSSLQLDKQERGFSYNKEAF 121

Query: 133 LDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM + S ++A DVVN  + KDL +I+   GEE+ A RIA AIV+RR   P +TT +L
Sbjct: 122 LDMRMDTTSKLTAYDVVNFYSQKDLEKIIREYGEERFARRIAKAIVERRSKKPIETTTEL 181

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           S+LI   V   K+   HPA R+FQA+RI VN E++E+   L  + + L++GG +  +SFH
Sbjct: 182 SNLISSLVPRPKDGS-HPAQRTFQAIRIEVNGELDEIKIALEKSLRFLRSGGRICAISFH 240

Query: 252 SLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK+FF   S + +  + + +           ITKK + P++E++  N+RS SAK
Sbjct: 241 SLEDRIVKEFFKFHSLECVCPKDIPVCVCGKKKELNIITKKPITPSKEEIEKNKRSHSAK 300

Query: 311 LRAGMRT 317
           LR   + 
Sbjct: 301 LRVAEKV 307


>gi|332704509|ref|ZP_08424597.1| Ribosomal RNA small subunit methyltransferase H [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332554658|gb|EGJ51702.1| Ribosomal RNA small subunit methyltransferase H [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 328

 Score =  216 bits (549), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 128/325 (39%), Positives = 186/325 (57%), Gaps = 15/325 (4%)

Query: 9   MSSAIHHTIGDH--VPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIA 63
           M    H   G+H  + VLL + +  L P PG   LD T G GG+S +  ++   G+ ++ 
Sbjct: 2   MRELAHKEQGEHGHISVLLAETLEFLAPRPGGRYLDGTLGLGGHSEAILELAGQGAELLG 61

Query: 64  LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDC 120
           LDRD  A+   +  +  + +   L QA +S  +  + + G   +DG V DLG+SS+Q+D 
Sbjct: 62  LDRDAQALERARTRLARFGQAAHLVQAPYSSFEAEMENLGWDLLDGAVLDLGISSLQVDL 121

Query: 121 GDRGFSFQKSGPLDMRMS--CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178
            +RGFSF   GPLDMRM        AS +VN+A+ + L  I+  LGEE  A RIA AIV+
Sbjct: 122 AERGFSFMAEGPLDMRMDPDSGAAPASQIVNKASCERLKEIIRDLGEEPMAGRIARAIVE 181

Query: 179 RRQSAPFQTTQDLSSLIQKT--VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236
            RQ    +TT +L++++ +     + +  R HPATR+FQALR+ VN+E+EEL   L    
Sbjct: 182 ARQDKEIETTLELAAIVARAYPAKWRRTARNHPATRTFQALRMAVNSELEELESFLSRIT 241

Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVV 294
             L+ GG ++V+SFHSLEDRLVK  F   + K    R          P + + +TKK + 
Sbjct: 242 DRLRPGGRVVVISFHSLEDRLVKWAFREDARKCRCPRTQPFCDCGGQPRL-KLLTKKPLA 300

Query: 295 PTQEDVAFNRRSRSAKLRAGMRTVE 319
           P+++++A N RSRSAKLRA  R  E
Sbjct: 301 PSEQEMAANPRSRSAKLRAAERVGE 325


>gi|302561117|ref|ZP_07313459.1| methylase MraW [Streptomyces griseoflavus Tu4000]
 gi|302478735|gb|EFL41828.1| methylase MraW [Streptomyces griseoflavus Tu4000]
          Length = 318

 Score =  216 bits (549), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 126/311 (40%), Positives = 187/311 (60%), Gaps = 12/311 (3%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74
           HVPV+L++ + LL PA   PG V++D T G GG+S +  +    + ++ALDRD  A+   
Sbjct: 6   HVPVMLQRCLDLLAPALEGPGAVVVDCTLGLGGHSEALLRRFPEARLVALDRDKEALRLS 65

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            E +  + E+ +L  A + +L D +   G+    GV+FDLGVSSMQ+D   RGF++ +  
Sbjct: 66  GERLAPFGERATLVHAVYDELPDVLGRLGIARAQGVLFDLGVSSMQLDEAGRGFAYAQDA 125

Query: 132 PLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM   +G+SA++V+N     +L RIL   GEEKQA RI  AIV+ R+  PF  +  
Sbjct: 126 PLDMRMDQTTGVSAAEVLNTYPPGELVRILRAYGEEKQAKRIVSAIVREREKEPFTNSAR 185

Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  LI+  +   +K    +PA R+FQALRI VN E+  L + + +A KAL  GG + V+S
Sbjct: 186 LVELIRDALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVKALGVGGRIAVLS 245

Query: 250 FHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           +HSLEDRLVK+ FA+ +         ++P    P   + +T+   +PT+E++A NRR+  
Sbjct: 246 YHSLEDRLVKQVFAAGAATTAPPGLPVVPEQYQPR-LKLLTRGAELPTEEEIAENRRAAP 304

Query: 309 AKLRAGMRTVE 319
           A+LR   R  E
Sbjct: 305 ARLRGAERIRE 315


>gi|317050381|ref|YP_004111497.1| S-adenosyl-methyltransferase MraW [Desulfurispirillum indicum S5]
 gi|316945465|gb|ADU64941.1| S-adenosyl-methyltransferase MraW [Desulfurispirillum indicum S5]
          Length = 316

 Score =  216 bits (549), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 126/322 (39%), Positives = 188/322 (58%), Gaps = 21/322 (6%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPG---KVILDATFGAGGYSRSFCKMGSNV--IA 63
           MS+  HH     +PVL + V++ L PA      +++D T G GG+S    +   +V  I 
Sbjct: 1   MSTTFHH-----IPVLADAVLSSLGPALNAEQPLLVDCTVGGGGHSSLILEHCPSVRIIG 55

Query: 64  LDRDPFAVSCGQETMRDYKEQFSLFQATFSQL-----QDYVPDKGVDGVVFDLGVSSMQI 118
           +D+DP A+    + +    E+F+  +  F+QL     Q  V    V+G ++DLGVSS Q+
Sbjct: 56  IDQDPAALQACSDRL---GERFTPLRGNFAQLHRLLKQANVAPSSVNGFLYDLGVSSHQL 112

Query: 119 DCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177
           D  +RGFSF   GPLDMRM  S  +SA+DVVN  + ++L RI+   GEE+ + R+A  I 
Sbjct: 113 DTPERGFSFLSDGPLDMRMDPSAPLSAADVVNTYSEEELARIIHAYGEERHSRRVARVIA 172

Query: 178 KRRQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236
             R+  PF TT++L+ LI + +  F +N  IHPATR+FQALRI VN E++ +   L SA 
Sbjct: 173 ACRREKPFTTTKELADLIHRDIAKFYRNESIHPATRTFQALRIEVNGELDAITTSLESAL 232

Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA-HPAVFQSITKKVVVP 295
             L+ GG+L V+SFHSLEDR++K+FF   +   +    +      H  + + +T+K ++ 
Sbjct: 233 TYLRPGGILAVISFHSLEDRIIKQFFRQHASTCICPPEVWQCRCQHQPLLEILTRKPLIA 292

Query: 296 TQEDVAFNRRSRSAKLRAGMRT 317
            + +   N RSRSAKLR   RT
Sbjct: 293 DEAEKQLNPRSRSAKLRVARRT 314


>gi|311087120|gb|ADP67200.1| S-adenosyl-methyltransferase MraW [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
          Length = 312

 Score =  216 bits (549), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 123/307 (40%), Positives = 191/307 (62%), Gaps = 15/307 (4%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSC 73
           I  H+PV+ +++I  L      + +D+TFG GG+S    K       + ++DRDP A S 
Sbjct: 4   IFKHIPVMKKELIDSLKIKKNGIYIDSTFGTGGHSNEILKKLGQSGRLYSIDRDPIAFSI 63

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQK 129
           G + ++D   +F +    FS+L D+  ++     V+G++FDLGVSS+QID   RGFSF+ 
Sbjct: 64  GSK-IKD--SRFHIINENFSKLLDFAKNEKIIGKVNGIIFDLGVSSIQIDDYRRGFSFKN 120

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM+ + GISAS+ + ++NVK+++ +L   GEE+ + +IA+AI +R Q     +T
Sbjct: 121 DGPLDMRMNPNYGISASEWLFESNVKEISFVLKNFGEERFSRKIAYAIKRRSQIKKITST 180

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+++I+KT+  +KN   HPA RSFQA+RI++N E+EE+ + L S  K LK GG + ++
Sbjct: 181 LELANIIKKTIP-TKNKFKHPARRSFQAIRIYINQELEEIQKALESTLKILKPGGRISII 239

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV---VVPTQEDVAFNRR 305
           SFHSLEDRLVKKF    S K +    M  +        +   K+   ++PTQ ++  N R
Sbjct: 240 SFHSLEDRLVKKFMIKNSTKAIIPYGMPITEEQLNRLTTCKLKIINRILPTQNEINNNPR 299

Query: 306 SRSAKLR 312
           +RS+ LR
Sbjct: 300 ARSSVLR 306


>gi|332799086|ref|YP_004460585.1| Ribosomal RNA small subunit methyltransferase H [Tepidanaerobacter
           sp. Re1]
 gi|332696821|gb|AEE91278.1| Ribosomal RNA small subunit methyltransferase H [Tepidanaerobacter
           sp. Re1]
          Length = 320

 Score =  215 bits (548), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 122/311 (39%), Positives = 174/311 (55%), Gaps = 19/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           HVP+LL K I +L+P PG V +DAT G GG+ R   K        I +D+D  A+S  +E
Sbjct: 5   HVPILLHKTIEMLDPKPGGVYVDATLGGGGHFRELLKKAEYEGTFIGIDQDEVAISTAKE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
               +     L    F  L+  + +     +DG++FDLGVSS Q D G RGFS+ K  PL
Sbjct: 65  NFSKFSYDIRLIHDNFYNLKKIIKENKLSEIDGILFDLGVSSYQFDEGSRGFSYNKDAPL 124

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     +SA DVVN+ +  +L +I+   GEE  A RIA  I + R      TT +L 
Sbjct: 125 DMRMDQRKTLSAKDVVNKMSRDELKQIISEYGEESWAGRIADFICEARSRKEITTTGELV 184

Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  +   ++    HPA ++FQALRI+VN E+E L   ++ A + LK GG + V++FH
Sbjct: 185 EIIKNAIPARARRKGGHPARKTFQALRIYVNEELEILDSSIKDAVELLKPGGRICVITFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNA------HPAVFQSITKKVVVPTQEDVAFNRR 305
           SLEDR+VK  F     K++A   + P  A      H  V + +T K + P+QE++  N R
Sbjct: 245 SLEDRIVKNAF-----KLLATACICPKEALICTCNHTKVLKVLTSKPIYPSQEEIESNPR 299

Query: 306 SRSAKLRAGMR 316
           +RSAKLR   +
Sbjct: 300 ARSAKLRVAQK 310


>gi|295696471|ref|YP_003589709.1| S-adenosyl-methyltransferase MraW [Bacillus tusciae DSM 2912]
 gi|295412073|gb|ADG06565.1| S-adenosyl-methyltransferase MraW [Bacillus tusciae DSM 2912]
          Length = 315

 Score =  215 bits (548), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 117/311 (37%), Positives = 193/311 (62%), Gaps = 12/311 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H PVLL +V+A+L P PG + +D T G GG++++  +  +    +I +D+D  A++  +E
Sbjct: 5   HEPVLLHEVLAILQPRPGGLYVDGTLGGGGHAQAILEAAAPDGRLIGIDQDDEALTASKE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            +  Y  + +  +  F ++++ +      +GVDG++ D+G+SS Q+D  +RGFS++   P
Sbjct: 65  RLTPYGGRVTTVKGNFRRIKEILWGLGVIEGVDGILLDVGLSSPQVDEAERGFSYRSDAP 124

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  SG ++A D+VN     +L R++   GEE+ A+RIA AIV+RRQ    +TT +L
Sbjct: 125 LDMRMDLSGTLTARDIVNSWPEGELARVVRDYGEERWAARIAKAIVRRRQRQAIETTGEL 184

Query: 192 SSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           + L+++ +   ++ +  HPA R+FQALRI VN+E+  L +G++ A + L+ GG L V++F
Sbjct: 185 AELVKEAIPAAARRHGPHPARRTFQALRIAVNDELGALEEGVKGALEVLRPGGRLAVIAF 244

Query: 251 HSLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+VK+  A  +RS        +      P V + I ++ +VP  E++A N R+RS
Sbjct: 245 HSLEDRIVKRILAEEARSCICPPEAPVCTCGRRPRV-RLIGRRPIVPGPEELARNPRARS 303

Query: 309 AKLRAGMRTVE 319
           AKLR   R  +
Sbjct: 304 AKLRGAERLAQ 314


>gi|219682152|ref|YP_002468536.1| hypothetical protein BUAPTUC7_222 [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|254813208|sp|B8D7C6|RSMH_BUCAT RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|219621885|gb|ACL30041.1| hypothetical protein BUAPTUC7_222 [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
          Length = 312

 Score =  215 bits (548), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 123/307 (40%), Positives = 191/307 (62%), Gaps = 15/307 (4%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSC 73
           I  H+PV+ +++I  L      + +D+TFG GG+S    K       + ++DRDP A S 
Sbjct: 4   IFKHIPVMKKELIDSLKIKKNGIYIDSTFGTGGHSNEILKKLGQSGRLYSIDRDPIAFSI 63

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQK 129
           G + ++D   +F +    FS+L D+  ++     V+G++FDLGVSS+QID   RGFSF+ 
Sbjct: 64  GSK-IKD--SRFHIINENFSKLLDFAKNEKIIGKVNGIIFDLGVSSIQIDDYRRGFSFKN 120

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM+ + GISAS+ + ++NVK+++ +L   GEE+ + +IA+AI +R Q     +T
Sbjct: 121 DGPLDMRMNPNYGISASEWLFESNVKEISFVLKNFGEERFSRKIAYAIKRRSQIKKITST 180

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+++I+KT+  +KN   HPA RSFQA+RI++N E+EE+ + L S  K LK GG + ++
Sbjct: 181 LELANIIKKTIP-TKNKFKHPARRSFQAIRIYINQELEEIHKALESTLKILKPGGRISII 239

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV---VVPTQEDVAFNRR 305
           SFHSLEDRLVKKF    S K +    M  +        +   K+   ++PTQ ++  N R
Sbjct: 240 SFHSLEDRLVKKFMIKNSTKAIIPYGMPITEEQLNRLTTCKLKIINRILPTQNEINNNPR 299

Query: 306 SRSAKLR 312
           +RS+ LR
Sbjct: 300 ARSSVLR 306


>gi|193659891|ref|XP_001947856.1| PREDICTED: probable S-adenosyl-L-methionine-dependent
           methyltransferase CG14683-like [Acyrthosiphon pisum]
          Length = 351

 Score =  215 bits (548), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 126/330 (38%), Positives = 184/330 (55%), Gaps = 28/330 (8%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVS 72
           H    H PVLLE+ I+ L+P  G  I+D TFGAGG++    +      V  LDRDP A +
Sbjct: 20  HNSRPHKPVLLEEAISYLSPKKGHNIIDMTFGAGGHTERILQENDTTVVYCLDRDPTACA 79

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSF 127
             ++    Y  +    +  FS L   + + G      DG++FD G SSMQ D   RGFS 
Sbjct: 80  MAKQLSERYPNRVIPLKGKFSDLPVLLKNLGCKMNSFDGILFDFGASSMQFDTASRGFSI 139

Query: 128 QKSGPLDMRMSCS--GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-AP 184
            K+GPLDMRM      I+A+DV+ +A+  DL +I  + GEEKQ+ +IA+A+++ R    P
Sbjct: 140 SKNGPLDMRMDPEEQTITAADVLAKADQSDLYKIFKVYGEEKQSKKIANAVIEARYLFKP 199

Query: 185 FQTTQDLSSLIQKTVYFSKNNRI-----HPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
            +TT+D   L+Q        + +     HPAT+ FQALRIFVNNE+ E+   +  A   L
Sbjct: 200 LKTTRDFCELVQNVCDNEMRSDMLHRPSHPATKVFQALRIFVNNELNEINHSIVLASHYL 259

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMA----VRHMIPSNAH---------PAVFQ 286
           K GG+++ V+FHSLED +VK+       + MA    ++++ P  A+          + + 
Sbjct: 260 KMGGVMVTVAFHSLEDTIVKRHIQGNINENMANTLPLKYINPMQAYDKEFMDVVNDSCWH 319

Query: 287 SITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
            I K V+ P+ E+V  N RSRSA+LRA +R
Sbjct: 320 QIHKHVITPSVEEVESNPRSRSARLRAAVR 349


>gi|332305217|ref|YP_004433068.1| S-adenosyl-methyltransferase MraW [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172546|gb|AEE21800.1| S-adenosyl-methyltransferase MraW [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 311

 Score =  215 bits (547), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 128/306 (41%), Positives = 187/306 (61%), Gaps = 19/306 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+ VLL++ +  L+  P  V LDATFG GG+S+      S+   +IALDRDP A+   + 
Sbjct: 7   HLSVLLQESLDGLSIKPDGVYLDATFGRGGHSKQILTQLSDKGRLIALDRDPSAIKSAKA 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              D +  FS+    FS+++D +        VDG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 67  LANDPR--FSIHHCNFSEMEDVLTSLELHGKVDGILMDLGVSSPQLDEPERGFSFMREGP 124

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+   G SA+  +  A  +D+ +++   GEEK   RIAH IV  RQ AP  TT  L
Sbjct: 125 LDMRMNPTKGQSAAQWLAHAEEQDIAQVIKEFGEEKFGKRIAHGIVNARQQAPITTTAQL 184

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + +I   V   K+   HPATRSFQ +RI++N+E++E+  GL+SA  +L +GG L V+SFH
Sbjct: 185 AEIIDIAVPV-KDKFKHPATRSFQGIRIYINSELDEIRTGLKSALNSLNSGGRLSVISFH 243

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP-----SNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           SLEDRLVK+F   +S + + V H +P      ++H A+      K + P+ E+++ N R+
Sbjct: 244 SLEDRLVKRFIREQS-RGLQVPHGLPIMQSEIDSHKAL--KAIGKAIKPSSEELSRNVRA 300

Query: 307 RSAKLR 312
           RS+ LR
Sbjct: 301 RSSVLR 306


>gi|157963630|ref|YP_001503664.1| S-adenosyl-methyltransferase MraW [Shewanella pealeana ATCC 700345]
 gi|262826529|sp|A8H992|RSMH_SHEPA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|157848630|gb|ABV89129.1| S-adenosyl-methyltransferase MraW [Shewanella pealeana ATCC 700345]
          Length = 315

 Score =  215 bits (547), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 125/309 (40%), Positives = 184/309 (59%), Gaps = 15/309 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQ 75
           +H+ VLL + +A LN  P  + +D TFG GG+SR   + +G N  +IA+DRDP A++  +
Sbjct: 6   EHLSVLLAETVAGLNIRPDGIYIDGTFGRGGHSRKVLEELGPNGRLIAIDRDPQAIAAAE 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +   D +  F +    F QL DYV D G    +DGV+ D GVSS Q+D  +RGFSF + G
Sbjct: 66  QFKDDSR--FQIVHGGFGQLADYVEDLGLKGQIDGVLLDFGVSSPQLDDAERGFSFLRDG 123

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  S G +A+  + +A ++D+  +    GEEK +  IA  I   R+ APF  T+D
Sbjct: 124 PLDMRMDNSQGETAAQWLARAEIEDMAWVFKTYGEEKNSRHIARCIAADREKAPFLRTKD 183

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ LI +     + N+ HPATR FQA+RI++N+E+E++ Q L  A   L   G L V+SF
Sbjct: 184 LADLIARITKNKERNK-HPATRVFQAIRIYINSELEQIDQALEGALAVLAPEGRLSVISF 242

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIP---SNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           HSLEDR+VK+F   R+ +  +V H +P   +  + +       K + P+ E+V  N R+R
Sbjct: 243 HSLEDRMVKRFI-RRNSQGESVPHGLPITEAEINKSRKLKAMGKAIKPSVEEVERNARAR 301

Query: 308 SAKLRAGMR 316
           S+ LR   R
Sbjct: 302 SSVLRIAER 310


>gi|254797245|ref|YP_003082087.1| S-adenosyl-methyltransferase MraW [Neorickettsia risticii str.
           Illinois]
 gi|254590494|gb|ACT69856.1| S-adenosyl-methyltransferase MraW [Neorickettsia risticii str.
           Illinois]
          Length = 296

 Score =  215 bits (547), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 123/295 (41%), Positives = 173/295 (58%), Gaps = 18/295 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSNVIALDRDPFAVSCGQETM 78
           H PVLL + +  L P  G V +DATFGAGGY+R+    +   V A+DRD       Q   
Sbjct: 13  HKPVLLSEALKFLAPKNGAVYVDATFGAGGYTRAILSSVDCFVYAIDRDETVKRFFQLIE 72

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138
            D+ ++ +   A F  ++  + +  VDG+VFDLGVS+MQ+   DRGFSF   GPLDMRM 
Sbjct: 73  SDFPKRTTFINANFVDIEALLGEVKVDGIVFDLGVSTMQLKVADRGFSFLHEGPLDMRMD 132

Query: 139 CSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK 197
            + I +A  +VN      +  I+   GEE+ + +IAHAIV  R+     TT  L+ ++ +
Sbjct: 133 RNTILTAETIVNSYTEVKIASIIYQFGEERMSRKIAHAIVDARRKKRITTTSSLAEIV-R 191

Query: 198 TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRL 257
           + +  +  +I PAT++FQALRIFVN+E+  L  GLR+A   LK GG  +VVSFHSLEDR+
Sbjct: 192 SCFPKRYYKIDPATKTFQALRIFVNDELGALECGLRTALTMLKVGGRAVVVSFHSLEDRI 251

Query: 258 VKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           VK  F S                H   F  +TKK+VVP++++V  N  SRSA++R
Sbjct: 252 VKHLFRS---------------VHGNGFNLLTKKIVVPSRDEVRENPSSRSARMR 291


>gi|288919045|ref|ZP_06413386.1| S-adenosyl-methyltransferase MraW [Frankia sp. EUN1f]
 gi|288349585|gb|EFC83821.1| S-adenosyl-methyltransferase MraW [Frankia sp. EUN1f]
          Length = 327

 Score =  214 bits (546), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 125/305 (40%), Positives = 183/305 (60%), Gaps = 12/305 (3%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74
           H PVL E+V+ LL PA   PG +++D T G GG+S +  +    + +I LDRDP A++  
Sbjct: 5   HTPVLTERVVELLTPAMQAPGAIVVDTTVGLGGHSLALLEAFPRARLIGLDRDPRALAYS 64

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +  + D   +  L    + QL D +   GV   +G++FDLGVSSMQ+D  +RGF++ +  
Sbjct: 65  RHRLADLGTRVDLVHMVYDQLPDALSGLGVAEVNGILFDLGVSSMQLDMDERGFAYSRDA 124

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM    G +A+DV+N  +V  LTRIL   GEE+ A RIA A+V  RQ+APF T+  
Sbjct: 125 PLDMRMDQERGPTAADVLNTYDVDSLTRILRNYGEERFARRIAQAVVSARQTAPFTTSAR 184

Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  LI+  +   ++    +PA R+FQALRI VN E++ L + L +A  AL  GG L+V+S
Sbjct: 185 LVDLIRDAIPAAARRTGGNPAKRTFQALRIEVNTELDVLERALPAAFDALAVGGRLVVLS 244

Query: 250 FHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           +HSLEDRLVK+    R+   V     +IP  A P   + +T+     + +++  N R+ S
Sbjct: 245 YHSLEDRLVKRSLGPRAVPAVPPDMPVIPDEARP-TLRWLTRGAEPASDQEIERNARAGS 303

Query: 309 AKLRA 313
            +LRA
Sbjct: 304 VRLRA 308


>gi|291300155|ref|YP_003511433.1| S-adenosyl-methyltransferase MraW [Stackebrandtia nassauensis DSM
           44728]
 gi|290569375|gb|ADD42340.1| S-adenosyl-methyltransferase MraW [Stackebrandtia nassauensis DSM
           44728]
          Length = 336

 Score =  214 bits (546), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 124/316 (39%), Positives = 191/316 (60%), Gaps = 10/316 (3%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCG 74
           HVPV  E+V  LL PA   P  V +DAT GAGG+S +  +   +  VI +DRDP A+   
Sbjct: 12  HVPVFAERVCQLLAPAFDRPDPVCVDATLGAGGHSLALLEAHPSLTVIGIDRDPDALELA 71

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSG 131
            + +  + ++F   +A + +L + + + GVD   G++FDLGVSSMQ+D  +RGF++ +  
Sbjct: 72  GKRLARFGDRFRPARAVYDELDEVLDETGVDQISGILFDLGVSSMQLDVAERGFAYAQDA 131

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  S G++A++VVN    +DL+RIL I GEE+ A RIA +IV +R+ AP +++++
Sbjct: 132 PLDMRMDQSQGMTAAEVVNSYAERDLSRILRIYGEERFAPRIAKSIVAQRKRAPIESSRE 191

Query: 191 LSSLIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ L++  V  +   R  +P+ R+FQALRI VN E++ L   L  A  AL   G ++V+S
Sbjct: 192 LADLVRDAVPAATRRRGGNPSKRTFQALRIEVNRELDVLRDALPRAIDALAPDGRIVVLS 251

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           +HSLEDR+VK+    R+         I         + +TK    P++ ++A N R+ SA
Sbjct: 252 YHSLEDRIVKRELGERTKSSAPAGLPIDVPGTEPTLRWLTKGAQPPSEAEIAANPRAASA 311

Query: 310 KLRAGMRTVERSIEDD 325
           KLRA  +   R+ + D
Sbjct: 312 KLRAAQKLGGRNQDHD 327


>gi|328950951|ref|YP_004368286.1| Ribosomal RNA small subunit methyltransferase H [Marinithermus
           hydrothermalis DSM 14884]
 gi|328451275|gb|AEB12176.1| Ribosomal RNA small subunit methyltransferase H [Marinithermus
           hydrothermalis DSM 14884]
          Length = 281

 Score =  214 bits (545), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 124/300 (41%), Positives = 175/300 (58%), Gaps = 25/300 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           HVPVL  + + LL    G + +DAT G  G++R   + G  VI  D+DP A++  +    
Sbjct: 3   HVPVLYHETLELLAVQRGGLYVDATLGGAGHTRGILERGGQVIGFDQDPEAIARVRALRL 62

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
           D     +L +  F  L+ ++ + GV   DGV+ DLGVSS   D  +RGFS++  GPLDMR
Sbjct: 63  D---GLTLVEGNFRHLEAHLNELGVAEVDGVLADLGVSSYHFDNPERGFSYRHEGPLDMR 119

Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
           MS  G +A+DVVN   V++L RIL   GEE +A RIA  I + R+  P +TT  L+ +++
Sbjct: 120 MSGEGPTAADVVNTYPVEELARILRTFGEEPRAWRIARRIAEVREQQPIRTTTQLAEVVR 179

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
           + V +      HPA ++FQALRI+VN+E+  L   L +A + LK GG L V+SFHSLEDR
Sbjct: 180 QAVGWRGAG--HPARKTFQALRIYVNDELGALEAFLEAAARVLKPGGRLAVISFHSLEDR 237

Query: 257 LVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           +VK+F                     A FQ +TKK + P+  + A N R+RSAKLR G+R
Sbjct: 238 IVKRFLKE-----------------DARFQVLTKKPITPSDAERATNPRARSAKLRGGVR 280


>gi|225677071|ref|ZP_03788076.1| S-adenosyl-methyltransferase [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
 gi|225590893|gb|EEH12115.1| S-adenosyl-methyltransferase [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
          Length = 314

 Score =  214 bits (545), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 126/323 (39%), Positives = 187/323 (57%), Gaps = 39/323 (12%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78
           H PVLL+++++LL+P  G + +DATFGAGGYS++  +     V A+DRD        +  
Sbjct: 3   HTPVLLKEMLSLLSPQDGGIYVDATFGAGGYSKAILESADCKVYAIDRDETVTKFYDDLS 62

Query: 79  RDYKEQFSLFQATFSQLQDYV------------------------PDKGVDGVVFDLGVS 114
             Y ++  LF   FS ++  +                           GVDGVVFD+GVS
Sbjct: 63  VRYPDRIKLFIEKFSNIKSILSSVEPSPVIPVLDTGKNNWSRAGMTSNGVDGVVFDIGVS 122

Query: 115 SMQIDCGDRGFSFQKSGPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIA 173
           SMQ+D GDRGFSF   GPLDM M + S I+AS  VN    +++   +   G E+ + +IA
Sbjct: 123 SMQLDNGDRGFSFLHDGPLDMSMDNSSYINASTFVNALREEEIANTIYNYGGERHSRKIA 182

Query: 174 HAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLR 233
            AI+  R+    +TT +L+ ++ ++V F   ++I PATR+FQA+RI+VN+E+ EL +G++
Sbjct: 183 RAIINARKKKTIKTTFELADIV-RSVVFRGKSKIDPATRTFQAIRIWVNDELGELEKGIK 241

Query: 234 SAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV 293
           +A + L   G LIVV+FHSLEDR+VK FF          + +  ++     F  + KKV+
Sbjct: 242 AASEILSENGKLIVVTFHSLEDRIVKTFF----------KDLCATDCK--TFSLLNKKVI 289

Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316
             + E+V+ N RSRSAKLRA  R
Sbjct: 290 EASIEEVSANPRSRSAKLRAIQR 312


>gi|167622387|ref|YP_001672681.1| S-adenosyl-methyltransferase MraW [Shewanella halifaxensis HAW-EB4]
 gi|262826525|sp|B0TQM9|RSMH_SHEHH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|167352409|gb|ABZ75022.1| S-adenosyl-methyltransferase MraW [Shewanella halifaxensis HAW-EB4]
          Length = 315

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 124/309 (40%), Positives = 182/309 (58%), Gaps = 15/309 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQ 75
           +H+ VLL + +A LN  P  + +D TFG GG+SR   + +G N  +IA+DRDP A++  +
Sbjct: 6   EHLSVLLTETVAGLNIKPDGIYIDGTFGRGGHSRKVLEELGPNGRLIAIDRDPQAIAAAE 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +   D +  F +    F QL DYV D G    +DGV+ D GVSS Q+D  +RGFSF + G
Sbjct: 66  QFKDDSR--FQIVHGGFGQLADYVEDLGLKGKIDGVLLDFGVSSPQLDDAERGFSFLRDG 123

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  S G +A+  + +A ++D+  +    GEEK +  IA  I   R+ APF  T++
Sbjct: 124 PLDMRMDNSQGQTAAQWLARAEIEDMAWVFKTYGEEKNSRHIARCIAADREKAPFLRTKE 183

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ LI +     + N+ HPATR FQA+RI++N+E+E++ Q L  A   L   G L V+SF
Sbjct: 184 LADLIARITKNKERNK-HPATRVFQAIRIYINSELEQIDQALEGALTVLAPEGRLSVISF 242

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK---KVVVPTQEDVAFNRRSR 307
           HSLEDR+VK+F   R+ +  +V H +P            K   K + P+ E++  N R+R
Sbjct: 243 HSLEDRMVKRFI-RRNSQGESVPHGLPITEEEINKSRKLKGVGKAIKPSAEEIERNARAR 301

Query: 308 SAKLRAGMR 316
           S+ LR   R
Sbjct: 302 SSVLRIAQR 310


>gi|190571322|ref|YP_001975680.1| S-adenosyl-methyltransferase MraW [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213018718|ref|ZP_03334526.1| S-adenosyl-methyltransferase MraW [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|226709924|sp|B3CMB5|RSMH_WOLPP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|190357594|emb|CAQ55035.1| S-adenosyl-methyltransferase MraW [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212995669|gb|EEB56309.1| S-adenosyl-methyltransferase MraW [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 294

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 120/302 (39%), Positives = 183/302 (60%), Gaps = 17/302 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78
           H+PVLL++++  L+P  G + +DATFGAGGYS++  +     V A+DRD        +  
Sbjct: 3   HIPVLLKEMLLQLSPHSGGIYVDATFGAGGYSKAILESADCKVYAVDRDETVTKFYDDLN 62

Query: 79  RDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
             Y  +  LF   FS +++ +     KG++G+VFD+GVSSMQ+D GDRGFSF + GPL+M
Sbjct: 63  VKYPNRIKLFIEKFSNIKNLLDSNNIKGINGIVFDVGVSSMQLDNGDRGFSFLRDGPLNM 122

Query: 136 RM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
            M + S ++AS  VN    +++   +   G E+ + RIA AIV  R+    +TT +L+ +
Sbjct: 123 SMDNYSHMNASTFVNALREEEIANTIYNYGGERHSRRIARAIVNARKKKIIKTTFELADI 182

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           + ++V F   ++I PATR+FQA+RI+VN+E+ EL +G+++A + L   G LIVV+FHSLE
Sbjct: 183 V-RSVVFRGKSKIDPATRTFQAIRIWVNDELGELEKGIKAASEILSENGKLIVVTFHSLE 241

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           DR+VK  F             +        F  + KKV+  + E++  N R+RSAKLRA 
Sbjct: 242 DRIVKTVFKD-----------LCEPGSTKTFSLLNKKVIKASSEEINVNPRARSAKLRAI 290

Query: 315 MR 316
            R
Sbjct: 291 QR 292


>gi|190572794|ref|YP_001970639.1| S-adenosyl-methyltransferase MraW [Stenotrophomonas maltophilia
           K279a]
 gi|262826755|sp|B2FNN0|RSMH_STRMK RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|190010716|emb|CAQ44325.1| putative S-adenosyl-methyltransferase mraW [Stenotrophomonas
           maltophilia K279a]
          Length = 322

 Score =  214 bits (544), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 124/304 (40%), Positives = 183/304 (60%), Gaps = 12/304 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H+PVL  +V+  L        LD TFG GG++R    ++G    ++ +D+DP A++  + 
Sbjct: 19  HLPVLYTQVLEGLRVIENGRYLDGTFGRGGHARGVLTQLGPEGRLLVMDKDPEAIAVAE- 77

Query: 77  TMRDY--KEQFSLFQATFSQLQDY-VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             RD+    + S+F+ +F+QL  +    +G+DGV+FDLGVSS Q+D  +RGFSF K GPL
Sbjct: 78  --RDFAPDPRVSIFRGSFAQLLQWDATAEGLDGVLFDLGVSSPQLDVAERGFSFGKDGPL 135

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM   SG SA+  +N+   +++  +L   GEE+Q+ RIA AIV RR+  PF  T +L+
Sbjct: 136 DMRMDPDSGESAAQWINRVEEREIADVLWTYGEERQSRRIARAIVARREKQPFSRTAELA 195

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            LI   +   K+ +IHPATRSFQA+RI +N E+ +L  GL +A + LK GG L V+SFHS
Sbjct: 196 ELIASVMPRGKD-KIHPATRSFQAIRIHINRELADLEAGLDAAVERLKPGGRLAVISFHS 254

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK++  +R  K       +P          +    +  T E++A N R+RSA LR
Sbjct: 255 LEDRIVKQYM-NRLAKAPPANRRLPEAVAFVPTLDLIGGAIKATDEELAANPRARSAVLR 313

Query: 313 AGMR 316
              +
Sbjct: 314 VAQK 317


>gi|58584368|ref|YP_197941.1| S-adenosyl-methyltransferase MraW [Wolbachia endosymbiont strain
           TRS of Brugia malayi]
 gi|68565413|sp|Q5GTH5|RSMH_WOLTR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|58418684|gb|AAW70699.1| Predicted S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
          Length = 333

 Score =  214 bits (544), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 130/339 (38%), Positives = 189/339 (55%), Gaps = 52/339 (15%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78
           H+PVLL++++  L+P  G + +DATFGAGGYS++  +     V A+DRD   +   ++  
Sbjct: 3   HIPVLLKEMLLQLSPQNGGIYVDATFGAGGYSKAILESADCKVYAIDRDKTVIKFYEDLN 62

Query: 79  RDYKEQFSLFQATFSQLQ--------DYV------------------------------- 99
             Y  +  LF   FS ++        +Y+                               
Sbjct: 63  IKYPSRVKLFIEKFSNIRSILDSNSLEYLVEPSAVSKLSSIISSGIQKKNIWISASSTGV 122

Query: 100 -PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM-SCSGISASDVVNQANVKDLT 157
            P   VDGVVFD+GVSSMQ+D GDRGFSF   GPLDMRM + S  +AS  VN    +++ 
Sbjct: 123 TPSNTVDGVVFDIGVSSMQLDDGDRGFSFLHDGPLDMRMDNSSHTNASTFVNALREEEIA 182

Query: 158 RILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQAL 217
             +   G E+ + RIA AIV  R+    +TT +L++++ ++V F   ++I PATR+FQA+
Sbjct: 183 NTIYNYGGERHSRRIARAIVNARKKKTIKTTFELANIV-RSVVFRGKSKIDPATRTFQAI 241

Query: 218 RIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP 277
           RI+VN+E+ EL +G+++A + L   G LIVV+FHSLEDR+VK FF S            P
Sbjct: 242 RIWVNDELGELEKGIKAASEILNKNGKLIVVTFHSLEDRIVKTFFKSLCE---------P 292

Query: 278 SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
            +    VF  + KK++  + E+V  N RSRSAKLRA  R
Sbjct: 293 RSIDCKVFSLLNKKMIKASAEEVNANPRSRSAKLRAIQR 331


>gi|71082740|ref|YP_265459.1| S-adenosyl-methyltransferase [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|91762838|ref|ZP_01264803.1| S-adenosyl-methyltransferase [Candidatus Pelagibacter ubique
           HTCC1002]
 gi|88909208|sp|Q4FPN5|RSMH_PELUB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|71061853|gb|AAZ20856.1| S-adenosyl-methyltransferase [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|91718640|gb|EAS85290.1| S-adenosyl-methyltransferase [Candidatus Pelagibacter ubique
           HTCC1002]
          Length = 336

 Score =  214 bits (544), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 128/341 (37%), Positives = 190/341 (55%), Gaps = 18/341 (5%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRD 67
           M + I   + +H PVLL ++I+++ P  G   +D TFG GGY++       + VIALDRD
Sbjct: 1   MIATIIPDVRNHYPVLLSEIISIITPQYGGTFIDCTFGQGGYTKRILNFPETKVIALDRD 60

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDY-VPDKGVDGVVFDLGVSSMQIDCGDRGFS 126
             +    QE    ++++       FSQL +  +  + +  V+FDLG S  QI    +G S
Sbjct: 61  SESSIKAQELQNSFEDRLLFKNIKFSQLNNLKLKHENIKAVIFDLGYSLNQIKDPKKGLS 120

Query: 127 FQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           F   G L+M+M  +  SA + +NQ + K+LT+I    G+E  + RIAH IV+ R      
Sbjct: 121 FDSIGELNMKMGINEFSAKEAINQLDEKELTKIFKYFGDEADSKRIAHNIVEDRSKREI- 179

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           TT++L  +I+ +    +N + H AT+ FQALRIFVN EI EL  GL +A K +K  G++ 
Sbjct: 180 TTEELVRIIESSKR-KRNYKTHSATKIFQALRIFVNKEISELIYGLINAAKVVKKDGVIA 238

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           VV+FHSLED++VK FF S S      RHM  +     +F+S+ KK +VP+ +++  N  S
Sbjct: 239 VVTFHSLEDKIVKYFFKSLSENKSISRHMPKTEEKLNLFKSVIKKPIVPSDKEIRENPPS 298

Query: 307 RSAKLRAGMRTVERSIED---------DSFVHLPRLPTLSQ 338
           RSAKLR  ++      ED         D F HL  +  LS+
Sbjct: 299 RSAKLRYVIKK-----EDFFDFETDILDKFKHLIDIENLSK 334


>gi|88858794|ref|ZP_01133435.1| S-adenosyl-methyltransferase [Pseudoalteromonas tunicata D2]
 gi|88819020|gb|EAR28834.1| S-adenosyl-methyltransferase [Pseudoalteromonas tunicata D2]
          Length = 312

 Score =  213 bits (543), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 125/309 (40%), Positives = 189/309 (61%), Gaps = 17/309 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76
           H+ VL+E+ I  L+  P  + +D TFG GG+S    K +G N  + A+DRDP A+   Q 
Sbjct: 7   HISVLMEETIDALDIKPDGIYIDGTFGRGGHSGEILKKLGENGRLQAIDRDPQAIKAAQR 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              D +  FS+   TFS+++    +      VDG++ D+GVSS Q+D  +RGFSF K GP
Sbjct: 67  FADDAR--FSIAHNTFSEIKLVAEEADLIGKVDGILLDIGVSSPQLDDAERGFSFMKDGP 124

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+ S G SA++ +  A+++++T ++   GEEK   RIAH I++ R   P  +T  L
Sbjct: 125 LDMRMNPSAGRSAAEWLAVADLEEITWVIKTYGEEKFGRRIAHKILETRVHTPITSTAQL 184

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI + V   K+   HPATR+FQA+RI++N+E+EE+   L ++ + LK GG L+V+SFH
Sbjct: 185 AKLIDEAVPV-KDKHKHPATRAFQAIRIYINSELEEITTALSASLEVLKPGGRLVVISFH 243

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT----KKVVVPTQEDVAFNRRSR 307
           SLEDR+VK+F   +S      R +  +NA   + Q +T     K + P +E++A N R+R
Sbjct: 244 SLEDRIVKQFIKKQSKGEALPRGLPLTNAQ--LQQKLTLKAIGKAIKPGEEELARNSRAR 301

Query: 308 SAKLRAGMR 316
           S+ LR   R
Sbjct: 302 SSVLRIAER 310


>gi|56416788|ref|YP_153862.1| S-adenosyl-methyltransferase MraW [Anaplasma marginale str. St.
           Maries]
 gi|68565444|sp|Q5PAS3|RSMH_ANAMM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|56388020|gb|AAV86607.1| S-adenosyl-methyltransferase [Anaplasma marginale str. St. Maries]
          Length = 291

 Score =  213 bits (543), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 130/303 (42%), Positives = 178/303 (58%), Gaps = 20/303 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI-ALDRDPFAVSCGQETM 78
           H PVLL +V+  L+P  G V +DATFG GGYSR   +    V+ A+D+D        E +
Sbjct: 3   HKPVLLNEVVEALSPKDGSVYVDATFGGGGYSRRILETAQCVVYAIDQDVVVKKYFDELL 62

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           + +  + +L  + FS+L++ V   GVD   GVVFDLG S+MQ+    RGFSF  SG LDM
Sbjct: 63  QSFPGRLNLAISRFSKLREVVLSFGVDKVDGVVFDLGTSAMQLADASRGFSFMNSGSLDM 122

Query: 136 RMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM  S +  A+  VN    K++  ++   G E+ + R+A AI+  R+      T DL+++
Sbjct: 123 RMCSSALRDAAMFVNTVPEKEMADVIYQYGGERYSRRVARAIIDARRKCRINNTGDLATI 182

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           I+  V  S+ + I PATR+FQA+RI+VNNE+EEL  GL +A + LK GG ++V SFHSLE
Sbjct: 183 IRSAVPRSRVHPIDPATRTFQAIRIWVNNELEELQAGLETAAEVLKIGGKILVTSFHSLE 242

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           DR+VK  F  RS   M              F  I KK ++PT E+V  N RSRS KLRA 
Sbjct: 243 DRVVKHKF--RSLCDMG-------------FSLINKKAIMPTDEEVKNNPRSRSGKLRAI 287

Query: 315 MRT 317
            R 
Sbjct: 288 ARV 290


>gi|157373543|ref|YP_001472143.1| S-adenosyl-methyltransferase MraW [Shewanella sediminis HAW-EB3]
 gi|262826558|sp|A8FQ92|RSMH_SHESH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|157315917|gb|ABV35015.1| S-adenosyl-methyltransferase MraW [Shewanella sediminis HAW-EB3]
          Length = 314

 Score =  213 bits (542), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 125/308 (40%), Positives = 181/308 (58%), Gaps = 15/308 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76
           H+ VLL + +A LN     + +D TFG GG+SR   K +G N  +IA+DRDP A++  ++
Sbjct: 8   HLSVLLTETVAGLNIKEDGIYIDGTFGRGGHSREVLKHLGENGRLIAIDRDPQAIAAAEQ 67

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              D +  FS+    F QL  YV D G    +DGV+ D GVSS Q+D  +RGFSF + GP
Sbjct: 68  FADDAR--FSIVHGGFGQLATYVEDLGLKGKIDGVLLDFGVSSPQLDDAERGFSFLRDGP 125

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G +A+D + +A ++D+  +    GEEK +  IA  I   R+  PF  T++L
Sbjct: 126 LDMRMDNSQGETAADWIARAEIEDMAWVFKTYGEEKNSRHIARCIAADREKTPFLRTKEL 185

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI +     + N+ HPATR FQA+RI++N+E+E++ Q L  A   L   G L V+SFH
Sbjct: 186 ADLIARISKNKERNK-HPATRVFQAIRIYINSELEQIDQALEGALSVLAPHGRLSVISFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK---KVVVPTQEDVAFNRRSRS 308
           SLEDR+VK+F   R  +  +V H +P          + K   K + P++E+V  N R+RS
Sbjct: 245 SLEDRMVKRFI-RRHCQGESVPHGLPITEAEINKSRLLKGIGKAIKPSEEEVERNTRARS 303

Query: 309 AKLRAGMR 316
           + LR   R
Sbjct: 304 SVLRIAER 311


>gi|222475152|ref|YP_002563568.1| S-adenosyl-methyltransferase (mraW) [Anaplasma marginale str.
           Florida]
 gi|255003134|ref|ZP_05278098.1| S-adenosyl-methyltransferase MraW [Anaplasma marginale str. Puerto
           Rico]
 gi|255004260|ref|ZP_05279061.1| S-adenosyl-methyltransferase MraW [Anaplasma marginale str.
           Virginia]
 gi|254813206|sp|B9KIK0|RSMH_ANAMF RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|222419289|gb|ACM49312.1| S-adenosyl-methyltransferase (mraW) [Anaplasma marginale str.
           Florida]
          Length = 291

 Score =  213 bits (542), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 130/303 (42%), Positives = 178/303 (58%), Gaps = 20/303 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI-ALDRDPFAVSCGQETM 78
           H PVLL +V+  L+P  G V +DATFG GGYSR   +    V+ A+D+D        E +
Sbjct: 3   HKPVLLNEVVEALSPKDGSVYVDATFGGGGYSRRILETAQCVVYAIDQDVVVKKYFDELL 62

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           + +  + +L  + FS+L++ V   GVD   GVVFDLG S+MQ+    RGFSF  SG LDM
Sbjct: 63  QSFPGRLNLAISRFSKLREVVLSFGVDKVDGVVFDLGTSAMQLADASRGFSFMNSGSLDM 122

Query: 136 RMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM  S +  A+  VN    K++  ++   G E+ + R+A AI+  R+      T DL+++
Sbjct: 123 RMCSSALRDAAMFVNTVPEKEMADVIYQYGGERYSRRVARAIIDARRKCRINNTGDLATI 182

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           I+  V  S+ + I PATR+FQA+RI+VNNE+EEL  GL +A + LK GG ++V SFHSLE
Sbjct: 183 IRSAVPRSRVHPIDPATRTFQAIRIWVNNELEELQAGLEAAAEVLKIGGKILVTSFHSLE 242

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           DR+VK  F  RS   M              F  I KK ++PT E+V  N RSRS KLRA 
Sbjct: 243 DRVVKHKF--RSLCDMG-------------FSLINKKAIMPTDEEVKNNPRSRSGKLRAI 287

Query: 315 MRT 317
            R 
Sbjct: 288 ARV 290


>gi|94984873|ref|YP_604237.1| methyltransferase [Deinococcus geothermalis DSM 11300]
 gi|263446197|sp|Q1J0B6|RSMH_DEIGD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|94555154|gb|ABF45068.1| methyltransferase [Deinococcus geothermalis DSM 11300]
          Length = 308

 Score =  213 bits (542), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 119/282 (42%), Positives = 173/282 (61%), Gaps = 26/282 (9%)

Query: 36  PGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95
           PG+VI+D T G  G++R   + G++VI +D+DP+A++  +E       Q ++ +  +  +
Sbjct: 34  PGRVIVDGTLGGAGHTRLLLEAGASVIGIDQDPYALNRAREAQ---LPQLTVLEGNYRDM 90

Query: 96  QDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQAN 152
           ++ +   GV   DGV+ D+GVSS Q+D   RGFS+    PLDMRM+ SG SA++VVN   
Sbjct: 91  RELLAGIGVTQVDGVLLDIGVSSFQLDDAARGFSYHTDAPLDMRMAQSGESAAEVVNGYP 150

Query: 153 VKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPAT 211
            ++L  I+   GEE+ + RIA AIV+ R  AP Q+T  L+ +I++    FSK   IHPA 
Sbjct: 151 EEELAAIIYEYGEERHSRRIARAIVQARTQAPIQSTVQLAEIIKRAYPGFSKG--IHPAR 208

Query: 212 RSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMA 271
           R+FQALRI VN+E+  L  GLR+AE  L  GG L V++FHSLEDR+VK+F          
Sbjct: 209 RTFQALRIHVNDELGALRDGLRAAEALLTPGGRLAVIAFHSLEDRIVKRFL--------- 259

Query: 272 VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
                   A P   +S+TK+ V  ++E+   N R+RSAKLRA
Sbjct: 260 -------RASP-TLKSLTKRPVEASEEERGRNPRARSAKLRA 293


>gi|226313432|ref|YP_002773326.1| S-adenosyl-methyltransferase MraW [Brevibacillus brevis NBRC
           100599]
 gi|263445821|sp|C0ZGB3|RSMH_BREBN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|226096380|dbj|BAH44822.1| S-adenosyl-methyltransferase [Brevibacillus brevis NBRC 100599]
          Length = 314

 Score =  213 bits (542), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 116/302 (38%), Positives = 188/302 (62%), Gaps = 9/302 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76
           HV VL+++ +  LN  PG + +D T G  G+S    S    G  +IA+D+D +A+   +E
Sbjct: 8   HVTVLMDEAVQGLNIRPGGIYVDCTLGGAGHSSLIASKLTEGGRLIAIDQDDWALDNARE 67

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  Y ++ +L ++ F  ++D V D    GVDGV+FDLGVSS Q+D G+RGFS+    PL
Sbjct: 68  RLASYMDRVTLVKSNFRHIKDIVKDLGLSGVDGVLFDLGVSSPQLDEGERGFSYNADAPL 127

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     +SA D++N+ + +++ +I+ + GEEK + RIA  IV++R+  P QTT +L 
Sbjct: 128 DMRMDQQAPLSAYDIINEWDEEEIAKIIWLYGEEKFSRRIARQIVQQRKKQPIQTTGELV 187

Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            LI++ +   ++    HPA R+FQA+RI VN+E++   + +  A + L   G + V++FH
Sbjct: 188 ELIKEGIPAAARRTGPHPAKRTFQAIRIAVNDELDAFKEAVVDAIEVLNPEGRVSVITFH 247

Query: 252 SLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+ K+ +   S G        I +  + AV + IT+K ++P++E++  N+R+RSAK
Sbjct: 248 SLEDRICKQIYQDFSKGCTCPPAFPICTCGNKAVVKVITRKPILPSEEELEANKRARSAK 307

Query: 311 LR 312
           LR
Sbjct: 308 LR 309


>gi|90407776|ref|ZP_01215954.1| S-adenosyl-methyltransferase [Psychromonas sp. CNPT3]
 gi|90311136|gb|EAS39243.1| S-adenosyl-methyltransferase [Psychromonas sp. CNPT3]
          Length = 313

 Score =  213 bits (542), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 127/311 (40%), Positives = 190/311 (61%), Gaps = 12/311 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MG--SNVIALDRDPFAVSCGQ 75
           +H+ VLL++ +  L      + +DATFG GG+SR   K +G    +IA+DRDP A+   +
Sbjct: 3   EHITVLLDEAVNGLAIKEEGIYIDATFGRGGHSRHILKQLGPKGRLIAIDRDPRAIVTAE 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
             M++   +FS+    FS L +YV + G    +DGV+ DLGVSS Q+D  +RGFSF + G
Sbjct: 63  LLMQE-DARFSIIHGPFSDLANYVKELGLAGQIDGVLLDLGVSSPQLDEAERGFSFMRDG 121

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM   +GISA+  + +A+V+D++ +L   GEEK A RIA AIV  R+  PF  T D
Sbjct: 122 PLDMRMDPTTGISAAQWLAKADVEDISWVLKTFGEEKFAYRIARAIVADREETPFLRTLD 181

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L++LI +     +  + HPATRSFQA+RI+VN+E+EE+ + L  A   L   GLL V+SF
Sbjct: 182 LANLISRLCP-KREKKKHPATRSFQAIRIYVNSELEEIHKVLDGALDILAIDGLLSVISF 240

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK--KVVVPTQEDVAFNRRSRS 308
           HSLEDR+VK+F   +         +  ++A     +++    K + P+  ++  N+RSRS
Sbjct: 241 HSLEDRIVKRFIRKQEKGREYPPGLPLTDAQMQSGKTMKAQGKALKPSAGEIEQNKRSRS 300

Query: 309 AKLRAGMRTVE 319
           + LR   +T +
Sbjct: 301 SVLRVAKKTAQ 311


>gi|327399188|ref|YP_004340057.1| Ribosomal RNA small subunit methyltransferase H [Hippea maritima
           DSM 10411]
 gi|327181817|gb|AEA33998.1| Ribosomal RNA small subunit methyltransferase H [Hippea maritima
           DSM 10411]
          Length = 297

 Score =  213 bits (542), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 124/305 (40%), Positives = 180/305 (59%), Gaps = 26/305 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H  VLL++ I  L P  G + +D T GA G++    K+ S    VIA D+D  A+   QE
Sbjct: 3   HKSVLLKETITTLQPRNGGIYIDMTLGAAGHTEKLLKLSSPSGIVIAFDKDQDAIKHAQE 62

Query: 77  TMRD-YKEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            +++ Y ++  L    ++ +++++       VDGV+ DLGVS  Q+   DRGFSF    P
Sbjct: 63  KLKETYGDRLILINDDYANIKEHLRRLEIDEVDGVIMDLGVSLDQLKS-DRGFSFNIDAP 121

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  +  ++A  +VN  ++++L RI+ + GEE  A RIA AIVK R   P  TT++L
Sbjct: 122 LDMRMDKNKPLTAEKIVNHWDMEELERIIRLYGEENFARRIAKAIVKNR---PIHTTKEL 178

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI+ TV  S + RIHPATR+FQALRI VN+E+E L +GL+ A +ALK  G++  +SFH
Sbjct: 179 AELIELTVPRSVSRRIHPATRTFQALRIVVNDELESLQKGLKGAIEALKENGIICAISFH 238

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+VK        K               V + + KK + PT ++V  N+ SRSAKL
Sbjct: 239 SLEDRIVKNILRDYKQK--------------GVLRLLNKKPIRPTPQEVKSNKHSRSAKL 284

Query: 312 RAGMR 316
           R  ++
Sbjct: 285 RCALK 289


>gi|119944895|ref|YP_942575.1| S-adenosyl-methyltransferase MraW [Psychromonas ingrahamii 37]
 gi|262825199|sp|A1SU11|RSMH_PSYIN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|119863499|gb|ABM02976.1| S-adenosyl-methyltransferase MraW [Psychromonas ingrahamii 37]
          Length = 315

 Score =  213 bits (541), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 128/311 (41%), Positives = 186/311 (59%), Gaps = 14/311 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  L      + +D TFG GG+SR    ++G+   +IA+DRDP A+  G+ 
Sbjct: 4   HTTVLLDEAVNGLGLKTDGIYVDGTFGRGGHSRHILGQLGAQGRLIAIDRDPRAIETGEA 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            M++   +F++    FS L +Y+ + G    +DGV+ DLGVSS QID  DRGFSF + GP
Sbjct: 64  LMKE-DPRFTIIHGPFSGLAEYIKELGLAGQIDGVLLDLGVSSPQIDDADRGFSFMRDGP 122

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM   SGISA+  + +A+V D+  +L   GEEK A RIA AIV  R   PF  T  L
Sbjct: 123 LDMRMDPTSGISAAQWLAKADVDDIGWVLKTFGEEKFAFRIARAIVADRTETPFLRTLQL 182

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI++ +   +  + HPATRSFQA+RI+VN+E+EE+ + L  A + L  GG L V+SFH
Sbjct: 183 AQLIER-LCPKREKKKHPATRSFQAIRIYVNSELEEIHKVLDGALEILAIGGQLSVISFH 241

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNA---HPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SLEDR+VK+F   +         +  + A   H    +S+  K + P+ E++  N R+RS
Sbjct: 242 SLEDRIVKRFIRKQEKGREYPPGLPLTEAQMQHGKTLKSLA-KALKPSAEEINENTRARS 300

Query: 309 AKLRAGMRTVE 319
           + LR   +  E
Sbjct: 301 SVLRVAQKIAE 311


>gi|16759115|ref|NP_454732.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29140665|ref|NP_804007.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213052857|ref|ZP_03345735.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213426162|ref|ZP_03358912.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213585689|ref|ZP_03367515.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
 gi|213858022|ref|ZP_03384993.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|20139004|sp|Q8Z9H4|RSMH_SALTI RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|25302091|pir||AE0517 conserved hypothetical protein STY0140 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16501405|emb|CAD01277.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29136289|gb|AAO67856.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 313

 Score =  213 bits (541), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 127/311 (40%), Positives = 191/311 (61%), Gaps = 19/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN  P  + +D TFG GG+SR    ++G    ++A+DRDP A++  Q 
Sbjct: 7   HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAQ- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           T+ D +  FS+    FS L DYV ++     +DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 66  TINDPR--FSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G SA++ +  A   D+  +L   GEE+ A RIAHAIV+R +  P   T++L
Sbjct: 124 LDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIAHAIVERNREQPMTRTKEL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L +GG L ++SFH
Sbjct: 184 AEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLASGGRLSIISFH 242

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306
           SLEDR+VK+F    SR  +V A   M  +          +++ K  ++P +++VA N R+
Sbjct: 243 SLEDRIVKRFMREQSRGPQVPAGLPMTEAQLKKLGGRELRALGK--LMPGEKEVAENPRA 300

Query: 307 RSAKLRAGMRT 317
           RS+ LR   RT
Sbjct: 301 RSSVLRIAERT 311


>gi|254994991|ref|ZP_05277181.1| S-adenosyl-methyltransferase MraW [Anaplasma marginale str.
           Mississippi]
          Length = 291

 Score =  213 bits (541), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 129/303 (42%), Positives = 178/303 (58%), Gaps = 20/303 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI-ALDRDPFAVSCGQETM 78
           H PVLL +V+  L+P  G V +DATFG GGYSR   +    V+ A+D+D        E +
Sbjct: 3   HKPVLLNEVVEALSPKDGSVYVDATFGGGGYSRRILETAQCVVYAIDQDVVVKKYFDELL 62

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           + +  + +L  + FS+L++ V   GVD   GVVFDLG S+MQ+    RGFSF  SG LDM
Sbjct: 63  QSFPGRLNLAISRFSKLREVVLSFGVDKVDGVVFDLGTSAMQLADASRGFSFMNSGSLDM 122

Query: 136 RMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM  S +  A+  VN    K++  ++   G E+ + R+A AI+  R+      T DL+++
Sbjct: 123 RMCSSALRDAAMFVNTVPEKEMADVIYQYGGERYSRRVARAIIDARRKCRINNTGDLATI 182

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           I+  V  S+ + I PATR+FQA+RI+VNNE+EEL  GL +A + LK GG ++V SFHSLE
Sbjct: 183 IRSAVPRSRVHPIDPATRTFQAIRIWVNNELEELQAGLEAAAEVLKIGGKILVTSFHSLE 242

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           DR+VK  F  RS   M              F  I KK ++PT E++  N RSRS KLRA 
Sbjct: 243 DRVVKHKF--RSLCDMG-------------FSLINKKAIMPTDEEIKNNPRSRSGKLRAI 287

Query: 315 MRT 317
            R 
Sbjct: 288 ARV 290


>gi|291296375|ref|YP_003507773.1| S-adenosyl-methyltransferase MraW [Meiothermus ruber DSM 1279]
 gi|290471334|gb|ADD28753.1| S-adenosyl-methyltransferase MraW [Meiothermus ruber DSM 1279]
          Length = 283

 Score =  212 bits (540), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 123/301 (40%), Positives = 170/301 (56%), Gaps = 28/301 (9%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETM 78
           +H PVL  + +  L+  PG + +DAT G  G++R   + G  V+A D+DP A++  Q   
Sbjct: 2   NHTPVLYHEALDWLSIRPGGLYVDATLGGAGHTRGILERGGQVVAFDQDPAAIARAQALG 61

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
                  +L QA F +L   +  +G   VDG++ DLGVSS  +D   RGFS+Q  GPLDM
Sbjct: 62  ---LPNLTLIQANFRELVPELAKRGTPQVDGLLADLGVSSFHLDDAGRGFSYQHEGPLDM 118

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RM    ++A +VVN    + L  IL   GEE +A RIA  IV+ R   P  TT  L+ +I
Sbjct: 119 RMGQGELTAHEVVNTYPEEALAEILFRYGEEPRARRIARFIVEHR---PIHTTTQLAEVI 175

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           ++   F      HPA +SFQALRI++N+E+  L Q LRSAE  LK GG L+V+SFHSLED
Sbjct: 176 RRATGFRSAG--HPARKSFQALRIYINDELGALEQLLRSAEAVLKPGGRLVVISFHSLED 233

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           RLVK F    +                   +S+TKK +VP++ +   N R+RSAK+R   
Sbjct: 234 RLVKHFLREST-----------------ALRSLTKKPIVPSEAEQRENPRARSAKMRVAE 276

Query: 316 R 316
           R
Sbjct: 277 R 277


>gi|259907409|ref|YP_002647765.1| S-adenosyl-methyltransferase MraW [Erwinia pyrifoliae Ep1/96]
 gi|224963031|emb|CAX54514.1| S-adenosyl-methyltransferase MraW [Erwinia pyrifoliae Ep1/96]
 gi|283477242|emb|CAY73151.1| S-adenosyl methionine adenyltransferase [Erwinia pyrifoliae DSM
           12163]
          Length = 313

 Score =  212 bits (540), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 127/313 (40%), Positives = 190/313 (60%), Gaps = 21/313 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN  P  + +D TFG GG+SR    ++G +  + A+DRDP A++   E
Sbjct: 7   HTTVLLDEAVNGLNIKPDGIYIDGTFGRGGHSRLILSQLGEHGRLFAIDRDPQAIAAAAE 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  +F++    FS L +Y   +G    +DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 67  IT---DPRFTIIHGPFSALAEYAEQRGLTGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G+SA++ + +A   D++ +L   GEE+ A RIA AIV+R +  P   T++L
Sbjct: 124 LDMRMDPTRGLSAAEWLLKAEESDISFVLKTFGEERFARRIARAIVERNREQPMTRTKEL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + +I       K+   HPATRSFQA+RI+VN+E+EE+ Q L+ A  AL AGG L V+SFH
Sbjct: 184 ADVIYAATPV-KDKFKHPATRSFQAIRIWVNSELEEIEQALKGALSALAAGGRLSVISFH 242

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP------SNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           SLEDR+VK+F   +S +   V H +P      S+      +++ K  ++P + +VA N R
Sbjct: 243 SLEDRIVKRFMREQS-RGPQVPHGLPMTEAQLSSMGGRQLKALGK--MMPGESEVADNPR 299

Query: 306 SRSAKLRAGMRTV 318
           +RS+ LR   RT 
Sbjct: 300 ARSSVLRIAERTA 312


>gi|289740101|gb|ADD18798.1| putative SAM-dependent methyltransferases [Glossina morsitans
           morsitans]
          Length = 381

 Score =  212 bits (540), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 130/331 (39%), Positives = 185/331 (55%), Gaps = 35/331 (10%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQE 76
           H PVL  + I  LNP P K+ +D TFGAGG+ +     CK    V ALDRDP A    Q+
Sbjct: 50  HTPVLCAEAINYLNPGPQKIYIDMTFGAGGHCKKLLDSCK-DIKVYALDRDPVAYELAQQ 108

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG-----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
             ++Y+ + +     FS L   + ++      VDG++FD G SSMQ +  +RGFS  K+G
Sbjct: 109 MTKEYEGRLTPLLGRFSDLPHLLKEQNIVRHSVDGILFDFGCSSMQFEEPERGFSVSKNG 168

Query: 132 PLDMRMSCSG------ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA-P 184
           PLDMRM C+       ++A+DV+ +A   DL +IL I GEEK A +IA AIV  R +  P
Sbjct: 169 PLDMRMDCAPGMNNDQVTAADVLARAEEPDLVKILRIYGEEKAAKKIARAIVDARSALHP 228

Query: 185 FQTTQDLSSLIQKTVY-----FSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
            +TT+ L+ L+   ++       K  R  H AT++FQALRIFVNNE+ E+  G+  A   
Sbjct: 229 IKTTKQLADLVASCLHETPFRLDKLQRPTHVATKTFQALRIFVNNELNEINYGMVLANAY 288

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSIT---- 289
           L+  G L+ ++FHSLED +VK+         +A    +    +  V      QSIT    
Sbjct: 289 LRLQGRLVAITFHSLEDTIVKRHLYGNVIDGLANPVPLKYCGYDVVHDEETMQSITLSNW 348

Query: 290 ----KKVVVPTQEDVAFNRRSRSAKLRAGMR 316
               K V++P +E++  N RSRSAKLRA ++
Sbjct: 349 KPLHKHVILPGEEEIKHNSRSRSAKLRAAVK 379


>gi|310765090|gb|ADP10040.1| S-adenosyl-methyltransferase MraW [Erwinia sp. Ejp617]
          Length = 313

 Score =  212 bits (540), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 127/313 (40%), Positives = 190/313 (60%), Gaps = 21/313 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN  P  + +D TFG GG+SR    ++G +  + A+DRDP A++   E
Sbjct: 7   HTTVLLDEAVNGLNIKPDGIYIDGTFGRGGHSRLILSQLGEHGRLFAIDRDPQAIAAAAE 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  +F++    FS L +Y   +G    +DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 67  IT---DPRFTIIHGPFSALAEYAEQRGLTGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G+SA++ + +A   D++ +L   GEE+ A RIA AIV+R +  P   T++L
Sbjct: 124 LDMRMDPTRGLSAAEWLLKAEESDISFVLKTFGEERFARRIARAIVERNREQPMTRTKEL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + +I       K+   HPATRSFQA+RI+VN+E+EE+ Q L+ A  AL AGG L V+SFH
Sbjct: 184 ADVIYAATPV-KDKFKHPATRSFQAIRIWVNSELEEIEQALKGALSALAAGGRLSVISFH 242

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP------SNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           SLEDR+VK+F   +S +   V H +P      S+      +++ K  ++P + +VA N R
Sbjct: 243 SLEDRIVKRFMREQS-RGPQVPHGLPMTEAQLSSMGGRQLKALGK--MMPGESEVADNPR 299

Query: 306 SRSAKLRAGMRTV 318
           +RS+ LR   RT 
Sbjct: 300 ARSSVLRIAERTA 312


>gi|291557117|emb|CBL34234.1| S-adenosyl-methyltransferase MraW [Eubacterium siraeum V10Sc8a]
          Length = 308

 Score =  212 bits (540), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 119/299 (39%), Positives = 177/299 (59%), Gaps = 8/299 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77
           H+PVLL + I  L+  P  + +D T G  G+S    K      +I  DRDP AV   +E 
Sbjct: 7   HIPVLLSETIESLDIKPDGIYVDCTTGFAGHSSEIAKRLTTGRLIGFDRDPDAVKAAEEK 66

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++DY    +L    FS   + + + GV   DGV+ DLGVSS Q+D  +RGFS+ +  PLD
Sbjct: 67  LKDY--PHTLINRKFSTFDESLDEIGVGKVDGVLMDLGVSSYQLDTAERGFSYHEDAPLD 124

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRMS SG+SA DVVN+ + + L +IL   GEEK A  I   I+K R++AP +TT +L+ +
Sbjct: 125 MRMSKSGLSAYDVVNEYSKEQLEKILFEYGEEKFAHGIVSGILKARETAPIKTTLELAEI 184

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           +++ V        +P  ++FQA+RI VN E++EL +G+  A + LKAGG L +++FHS+E
Sbjct: 185 VKRNVPLKVRKEKNPCKKTFQAIRIEVNGELDELKKGMSEAFERLKAGGRLAIITFHSIE 244

Query: 255 DRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           DR+VK  F    +G        +         +++ +K V  ++E++A N RSRSAKLR
Sbjct: 245 DRIVKNTFREYCTGCTCPPDFPVCVCGKKPRGRTVYRKPVTASEEELAVNNRSRSAKLR 303


>gi|197265544|ref|ZP_03165618.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197243799|gb|EDY26419.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
          Length = 313

 Score =  212 bits (539), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 127/311 (40%), Positives = 190/311 (61%), Gaps = 19/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN  P  + +D TFG GG+SR    ++G    ++A+DRDP A++  Q 
Sbjct: 7   HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAQ- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           T+ D +  FS+    FS L DYV ++     +DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 66  TINDPR--FSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G SA++ +  A   D+  +L   GEE+ A RIAHAIV+R +  P   T++L
Sbjct: 124 LDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIAHAIVERNREQPMTRTKEL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L ++SFH
Sbjct: 184 AEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSIISFH 242

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306
           SLEDR+VK+F    SR  +V A   M  +          +++ K  ++P +++VA N R+
Sbjct: 243 SLEDRIVKRFMREQSRGPQVPAGLPMTEAQLKKLGGRELRALGK--LMPGEKEVAENPRA 300

Query: 307 RSAKLRAGMRT 317
           RS+ LR   RT
Sbjct: 301 RSSVLRIAERT 311


>gi|194364373|ref|YP_002026983.1| S-adenosyl-methyltransferase MraW [Stenotrophomonas maltophilia
           R551-3]
 gi|262826731|sp|B4SJW8|RSMH_STRM5 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|194347177|gb|ACF50300.1| S-adenosyl-methyltransferase MraW [Stenotrophomonas maltophilia
           R551-3]
          Length = 322

 Score =  212 bits (539), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 123/304 (40%), Positives = 183/304 (60%), Gaps = 12/304 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H+PVL  +V+  L        LD TFG GG++R    ++G    ++ +D+DP A++  + 
Sbjct: 19  HLPVLYTQVLEGLRVIENGRYLDGTFGRGGHARGVLTQLGPEGRLLVMDKDPEAIAVAE- 77

Query: 77  TMRDY--KEQFSLFQATFSQLQDY-VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             RD+    + S+F+ +F+QL  +    +G+DGV+FDLGVSS Q+D  +RGFSF K GPL
Sbjct: 78  --RDFAPDPRVSIFRGSFAQLLQWDATAEGLDGVLFDLGVSSPQLDVAERGFSFGKDGPL 135

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM   SG SA+  +N+   +++  +L   GEE+Q+ RIA AIV RR+  PF  T +L+
Sbjct: 136 DMRMDPDSGESAAQWINRVEDREIADVLWTYGEERQSRRIARAIVARREKQPFSRTAELA 195

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            LI   +   K+ +IHPATRSFQA+RI +N E+ +L  GL +A + LK GG L ++SFHS
Sbjct: 196 ELIASVMPRGKD-KIHPATRSFQAIRIHINRELADLEAGLDAAVERLKPGGRLAIISFHS 254

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK++  +R  K       +P          +    +  T E++A N R+RSA LR
Sbjct: 255 LEDRIVKQYM-NRLAKAPPANRRLPEAEVFVPTLDLIGGAIKATDEELAANPRARSAVLR 313

Query: 313 AGMR 316
              +
Sbjct: 314 VAQK 317


>gi|218780979|ref|YP_002432297.1| S-adenosyl-methyltransferase MraW [Desulfatibacillum alkenivorans
           AK-01]
 gi|263447357|sp|B8FBS6|RSMH_DESAA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|218762363|gb|ACL04829.1| S-adenosyl-methyltransferase MraW [Desulfatibacillum alkenivorans
           AK-01]
          Length = 326

 Score =  212 bits (539), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 129/303 (42%), Positives = 177/303 (58%), Gaps = 10/303 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HV V+ ++V++LL+PAPG V++D TFG GG++R+  +       +I  D D  AV+  Q 
Sbjct: 5   HVSVMKQEVLSLLSPAPGHVVVDGTFGGGGHARAILERILPDGLLIGTDLDEDAVTNAQA 64

Query: 77  TMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
              D +  F +F   FS ++   D     G +G+V DLGVS   ++   RGFSFQ+  PL
Sbjct: 65  CFADVQNNFRIFHDNFSNIRAVLDQCGLAGANGIVLDLGVSLHLLEKSGRGFSFQREEPL 124

Query: 134 DMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           DMRM  S  G  A DVVN  +  +L RI    GEE+QA RIA  IV+RR+  P  T+  L
Sbjct: 125 DMRMDGSGGGPKAMDVVNAYSQDELARIFLEYGEERQAKRIARRIVQRREDEPITTSGRL 184

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++   V   K  RIHPATR FQALRI VNNE+  L + L +    L  GG L ++SFH
Sbjct: 185 ADIVASAVK-GKPGRIHPATRVFQALRIHVNNELAHLEKFLETCLDCLLPGGRLCIISFH 243

Query: 252 SLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK+ FA+ + G        +    +    + +TKKVV P+Q +V  N  SRSAK
Sbjct: 244 SLEDRIVKRRFAALAQGCTCPPDFPVCICGNQPKVKILTKKVVKPSQAEVEKNPMSRSAK 303

Query: 311 LRA 313
           +RA
Sbjct: 304 IRA 306


>gi|332991932|gb|AEF01987.1| 16S rRNA m(4)C1402 methyltranserfase [Alteromonas sp. SN2]
          Length = 313

 Score =  212 bits (539), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 126/304 (41%), Positives = 183/304 (60%), Gaps = 15/304 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76
           HV VLL++ I  L   P  + +DATFG GG+S      +GS+  +IA DRDP A+   + 
Sbjct: 9   HVSVLLDECIEALAIKPNGIYIDATFGRGGHSAHILDALGSDGTLIAFDRDPQAIEAAKR 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              D +  F +  + F  + + +   G    +DGV+ DLGVSS Q+D  +RGFSF + GP
Sbjct: 69  FADDSR--FRIIHSPFGDMAEEIEALGLTGKIDGVLMDLGVSSPQLDDAERGFSFLRDGP 126

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G SA+D + +A  +D+T+++   GEEK   RIAHAIV  R++ P   T  L
Sbjct: 127 LDMRMDTSRGESAADWLARAEEQDITQVIKEFGEEKFGKRIAHAIVNTRETTPITRTAQL 186

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           ++LI + V   K+   HPATR+FQ +RI++N E+E+L  GL++A + L   G L V+SFH
Sbjct: 187 AALIDEAVPV-KDKFKHPATRAFQGIRIYINAELEQLRTGLKAATQVLAKEGRLAVISFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK---KVVVPTQEDVAFNRRSRS 308
           SLEDRLVK+F   +S K  +V H +P          + K   + + P++ ++A N RSRS
Sbjct: 246 SLEDRLVKRFIKDQS-KGKSVPHNLPITQAEIDADKVLKALSRAIKPSELEIANNVRSRS 304

Query: 309 AKLR 312
           + LR
Sbjct: 305 SVLR 308


>gi|66809695|ref|XP_638570.1| hypothetical protein DDB_G0284343 [Dictyostelium discoideum AX4]
 gi|60467186|gb|EAL65220.1| hypothetical protein DDB_G0284343 [Dictyostelium discoideum AX4]
          Length = 367

 Score =  211 bits (538), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 115/315 (36%), Positives = 181/315 (57%), Gaps = 25/315 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQE 76
           H PV +++V+ +LNP P KV +DATFG GG+SR     CK    VIA DRDP      + 
Sbjct: 59  HKPVFIKEVLEILNPQPNKVYIDATFGMGGHSRGILETCK-DCYVIAFDRDPKVFEMTKP 117

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVD-----GVVFDLGVSSMQIDCGDRGFSFQKS- 130
              ++K++     +TFS ++  + +K +D     G+++D GVSS QID  DRGFSF+K  
Sbjct: 118 LRSEFKDRLITINSTFSSMRSALKEKNLDHLKISGILYDFGVSSYQIDTADRGFSFKKEL 177

Query: 131 -GPLDMRMS--CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
            GPLDMRM+   S I+A D++N  + KDL  I    GEEK    IA+ I+++R+  P + 
Sbjct: 178 EGPLDMRMNQNSSQITAYDIINTFSEKDLRDIFFYYGEEKHTKNIANEILRKRKIEPIKN 237

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T DL  +++ ++ +     +   +R F++LR+FVN+E+ E+  GL   E+ L+    L+ 
Sbjct: 238 TSDLVKIVESSIPYPM--ALKTISRVFRSLRMFVNDELNEIKIGLTQGEQLLEPNSPLLA 295

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +SFHS+EDR+VK++    +          P+   P          + P++E++ +N RS+
Sbjct: 296 ISFHSIEDRIVKQYLNKYTTIEEPTFKFSPTYKSP----------IFPSKEELEWNPRSK 345

Query: 308 SAKLRAGMRTVERSI 322
           SA LR  +RT  + I
Sbjct: 346 SAILRTAIRTSNKPI 360


>gi|109899828|ref|YP_663083.1| S-adenosyl-methyltransferase MraW [Pseudoalteromonas atlantica T6c]
 gi|123170716|sp|Q15Q09|RSMH_PSEA6 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|109702109|gb|ABG42029.1| S-adenosyl-methyltransferase MraW [Pseudoalteromonas atlantica T6c]
          Length = 311

 Score =  211 bits (538), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 126/306 (41%), Positives = 187/306 (61%), Gaps = 19/306 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H+ VLL++ I  L   P  V LDATFG GG+++    ++  N  +IALDRDP A+   + 
Sbjct: 7   HLSVLLQESIDGLAIKPDGVYLDATFGRGGHTKQILSQLSPNGRLIALDRDPSAIEAAKA 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              D +  FS+    FS+++D +        VDG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 67  LADDAR--FSIHHCNFSEMEDVLTSLELHGKVDGILMDLGVSSPQLDEPERGFSFMREGP 124

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+   G SA+  +  A  +D+ +++   GEEK   RIAH IV  RQ AP  TT  L
Sbjct: 125 LDMRMNPTKGQSAAQWLAHAEEQDIAQVIKEFGEEKFGKRIAHGIVNARQEAPITTTAQL 184

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + +I   V   K+   HPATRSFQ +RI++N+E++E+  GL++A  +L +GG L V+SFH
Sbjct: 185 AEIIDLAVPV-KDKFKHPATRSFQGIRIYINSELDEIRTGLKAALNSLNSGGRLSVISFH 243

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP-----SNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           SLEDRLVK+F   +S + + V H +P      ++H A+      K + P+ ++++ N R+
Sbjct: 244 SLEDRLVKRFIREQS-RGLQVPHGLPIMQAEIDSHKAM--KAIGKAIKPSSDELSRNVRA 300

Query: 307 RSAKLR 312
           RS+ LR
Sbjct: 301 RSSVLR 306


>gi|328778908|ref|XP_001120634.2| PREDICTED: probable S-adenosyl-L-methionine-dependent
           methyltransferase CG14683-like [Apis mellifera]
          Length = 388

 Score =  211 bits (538), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 128/330 (38%), Positives = 183/330 (55%), Gaps = 33/330 (10%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           H+PV++ +V+  L P+PGK+ +D TFGAGG+S    +   N+   ALDRDP A     + 
Sbjct: 61  HIPVMVNEVLHYLEPSPGKIFVDMTFGAGGHSMKILESSPNIKIFALDRDPIAHQFALKL 120

Query: 78  MRDYKEQFSLFQATFSQLQDY-----VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              Y EQ       FS+L        V    +DG +FD G SSMQ+D G+RGFS  K GP
Sbjct: 121 SEKYPEQIIPLLGRFSELPQLLCKYKVNVNSIDGFLFDFGCSSMQLDIGERGFSLSKDGP 180

Query: 133 LDMRMSC----SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQT 187
           LDMRM         +A++V+ +   +DL  IL I G EK A +IA AI++ R +    +T
Sbjct: 181 LDMRMDGFRYPQEPTAAEVLKEITEEDLAFILKIYGNEKYAKKIARAIIETRYTFRNLKT 240

Query: 188 TQDLSSLIQKTVYFSKNNRI----HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
           TQ+L+ LI+  +   + +++    H AT++FQALRIFVNNE+ E+  G+  A   LK  G
Sbjct: 241 TQELAQLIESVISEKRFDQLGRFTHCATKTFQALRIFVNNELNEINYGIIIAGFYLKTNG 300

Query: 244 LLIVVSFHSLEDRLVKKFFA---------------SRSGKVMAVRHMIPSNAHPAVFQSI 288
            LI +SFHSLED +VK+  +               S  GK   +  M   N  P  ++ +
Sbjct: 301 RLITISFHSLEDTIVKRHMSANITETVANKIPLKFSDYGKHYTLTEMKALNRIP--WKML 358

Query: 289 TKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318
            K V+ PT+E++  N RSRSAK RA  + +
Sbjct: 359 HKHVITPTEEEINKNPRSRSAKFRAITKVI 388


>gi|170728860|ref|YP_001762886.1| S-adenosyl-methyltransferase MraW [Shewanella woodyi ATCC 51908]
 gi|262826580|sp|B1KKY5|RSMH_SHEWM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|169814207|gb|ACA88791.1| S-adenosyl-methyltransferase MraW [Shewanella woodyi ATCC 51908]
          Length = 313

 Score =  211 bits (538), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 125/308 (40%), Positives = 179/308 (58%), Gaps = 15/308 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76
           H+ VLL + +A LN     + +D TFG GG+SR   K +G N  +IA+DRDP A+   ++
Sbjct: 7   HLSVLLTETVAGLNIKEDGIYIDGTFGRGGHSREVLKHLGENGRLIAIDRDPQAIEAAKQ 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              D +  FS+    F QL  YV + G    +DGV+ D GVSS Q+D  +RGFSF + GP
Sbjct: 67  FADDAR--FSIVHGGFGQLATYVEELGLKGKIDGVLLDFGVSSPQLDDAERGFSFLRDGP 124

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G +A+D + +A V+D+  +    GEEK +  IA  I   R+  PF  T++L
Sbjct: 125 LDMRMDNSQGETAADWLARAEVEDMAWVFKTYGEEKNSRHIARCIAADREKTPFLRTKEL 184

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI + +  SK    HPATR FQA+RI++N+E+E++ Q L  A   L   G L V+SFH
Sbjct: 185 ADLIAR-ISKSKERNKHPATRVFQAIRIYINSELEQIDQALEGALTVLAPQGRLSVISFH 243

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK---KVVVPTQEDVAFNRRSRS 308
           SLEDR+VK+F   R  +  +V H +P          + K   K + P+ E++  N R+RS
Sbjct: 244 SLEDRMVKRFI-RRHSQGESVPHGLPITEAEINKTRLLKGVGKAIKPSDEEIERNTRARS 302

Query: 309 AKLRAGMR 316
           + LR   R
Sbjct: 303 SVLRVAQR 310


>gi|163751816|ref|ZP_02159032.1| S-adenosyl-methyltransferase [Shewanella benthica KT99]
 gi|161328301|gb|EDP99462.1| S-adenosyl-methyltransferase [Shewanella benthica KT99]
          Length = 313

 Score =  211 bits (538), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 125/308 (40%), Positives = 180/308 (58%), Gaps = 15/308 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76
           H+ VLL + +A LN     + +D TFG GG+SR   K +G N  +IA+DRDP A+   ++
Sbjct: 7   HLSVLLSETVAGLNIKQDGIYIDGTFGRGGHSREVLKHLGGNGRLIAIDRDPQAIEAAKQ 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              D +  FS+    F QL  YV D G    +DGV+ D GVSS Q+D  +RGFSF + GP
Sbjct: 67  FADDSR--FSIVHGGFGQLATYVEDLGLKGKIDGVLLDFGVSSPQLDDAERGFSFLRDGP 124

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G +A++ + +A ++D+  +    GEEK +  IA  I   RQ  PF  T++L
Sbjct: 125 LDMRMDNSQGETAAEWIARAEIEDMAWVFKTYGEEKNSRHIARCIAADRQKTPFLRTKEL 184

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI +     + N+ HPATR FQA+RI++N+E+E++ Q L  A   L   G L V+SFH
Sbjct: 185 ADLIARICKSKERNK-HPATRVFQAIRIYINSELEQIDQALEGALVVLAPQGRLSVISFH 243

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK---KVVVPTQEDVAFNRRSRS 308
           SLEDR+VK+F   R+ +  +V H +P          + K   K   P+ E+V  N+R+RS
Sbjct: 244 SLEDRMVKRFI-RRNCQGKSVPHGLPITEDELDKTRLLKSIGKATKPSAEEVERNKRARS 302

Query: 309 AKLRAGMR 316
           + LR   R
Sbjct: 303 SILRVAER 310


>gi|85712541|ref|ZP_01043589.1| S-adenosyl-methyltransferase [Idiomarina baltica OS145]
 gi|85693675|gb|EAQ31625.1| S-adenosyl-methyltransferase [Idiomarina baltica OS145]
          Length = 315

 Score =  211 bits (537), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 127/307 (41%), Positives = 181/307 (58%), Gaps = 13/307 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H+ VLLE+ I  L   P  + +DATFG GG++R+     S    VIALD+DP A++  Q 
Sbjct: 8   HISVLLEESIRALVTDPDGIYIDATFGRGGHTRALLSKLSPKGRVIALDQDPQAIASAQA 67

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              D  E+FS+    FS L   +  +     V G++FDLGVSS Q+D  +RGFSF + GP
Sbjct: 68  LADD--ERFSIIHTPFSDLAHIIEQQQLAHQVTGILFDLGVSSPQLDDAERGFSFMRDGP 125

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G +A+D ++ A   D+T +L   GEE+ A +IA AIV  R+  PF  T+ L
Sbjct: 126 LDMRMDSSRGETAADWLSYAEEDDITYVLKTYGEERFARKIARAIVHDREQKPFTRTRQL 185

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI + V  SK    HPATRSFQA+RI VN E+E++   L ++  ALK  G L+V+SFH
Sbjct: 186 AELIGRLVP-SKEKHKHPATRSFQAIRIHVNRELEQIEDALEASLTALKEDGRLVVISFH 244

Query: 252 SLEDRLVKKFFASRS--GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK+F  + S   +V     +  +  +     ++  K + P+  ++  N R+RS+
Sbjct: 245 SLEDRIVKRFMRTHSQPKQVPPGLPITEAELNKDRRLALESKAIKPSAAELELNPRARSS 304

Query: 310 KLRAGMR 316
            LR   R
Sbjct: 305 VLRIARR 311


>gi|239978979|ref|ZP_04701503.1| putative S-adenosylmethionine-dependent methyltransferase
           [Streptomyces albus J1074]
          Length = 343

 Score =  211 bits (537), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 126/315 (40%), Positives = 183/315 (58%), Gaps = 12/315 (3%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74
           HVPV+L + + LL PA   PG V++D T G GG+S +       + ++ALDRD  A+   
Sbjct: 30  HVPVMLRRCLDLLAPALAEPGAVVVDCTLGLGGHSEALLATFPAARLVALDRDKEALRLS 89

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            E +  + ++ +L  A + +L + +   G   V GV+FDLGVSSMQ+D   RGF++ +  
Sbjct: 90  GERLARHGDRATLVHAVYDELPEVLDRLGIPRVQGVLFDLGVSSMQLDEAGRGFAYAQDA 149

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM   +GISA++V+N     DL RIL   GEEKQA RI  A+V  R   PF T+  
Sbjct: 150 PLDMRMDQTTGISAAEVLNTYAPGDLVRILRAYGEEKQARRIVSAVVDERAKEPFTTSAR 209

Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I+  +   +K    +PA R+FQALRI VN E+  L + + +A  +L  GG L V+S
Sbjct: 210 LVEVIRDALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVASLAVGGRLAVLS 269

Query: 250 FHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           +HSLEDRLVK+  A+ +         ++P    P   + +T+   +PT+E+VA NRR+  
Sbjct: 270 YHSLEDRLVKQVLAAGAASTAPPGLPVVPERYQPR-LKLLTRGAELPTEEEVAENRRAAP 328

Query: 309 AKLRAGMRTVERSIE 323
           A+LR   R  E   E
Sbjct: 329 ARLRGAQRIREEHQE 343


>gi|258511253|ref|YP_003184687.1| S-adenosyl-methyltransferase MraW [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257477979|gb|ACV58298.1| S-adenosyl-methyltransferase MraW [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 316

 Score =  211 bits (537), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 116/303 (38%), Positives = 185/303 (61%), Gaps = 9/303 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H  VLLE+ +  L P PG V +DAT G GG++    +       VIA D+D  A++  + 
Sbjct: 5   HETVLLEEAVEALRPQPGGVYVDATLGGGGHTARLLERSVPDGAVIAFDQDETAIAHAEP 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             R Y  + +L +A F+++++ +   GV   DGV+FDLGVSS Q D  +RGFS+   GPL
Sbjct: 65  LKRQYPGRLTLVKANFAEMEERLRALGVTAVDGVLFDLGVSSPQFDLPERGFSYWHEGPL 124

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     ++A ++VN+ + ++L RI+   GEE+ A+ IA AI + R   P +TT +L+
Sbjct: 125 DMRMDRHQPLTAREIVNEWDEQELARIIREYGEERFATAIARAITRARSKKPIETTTELA 184

Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +++  +   ++ +  HPA R+FQA+RI VN+E+  L +G+ +A +AL+ GG L V++FH
Sbjct: 185 EIVKSAIPAAARRSGPHPARRTFQAIRIAVNDELGALERGMEAAFRALRPGGRLSVITFH 244

Query: 252 SLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR VK+ F + + G +      +       + + +++K V P+ E++  N R+RSAK
Sbjct: 245 SLEDRAVKRLFQTWAQGCICPPEFPVCQCGRKPLGRMVSRKPVTPSSEELERNPRARSAK 304

Query: 311 LRA 313
           LRA
Sbjct: 305 LRA 307


>gi|291450857|ref|ZP_06590247.1| S-adenosylmethionine-dependent methyltransferase [Streptomyces
           albus J1074]
 gi|291353806|gb|EFE80708.1| S-adenosylmethionine-dependent methyltransferase [Streptomyces
           albus J1074]
          Length = 341

 Score =  211 bits (537), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 126/315 (40%), Positives = 183/315 (58%), Gaps = 12/315 (3%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74
           HVPV+L + + LL PA   PG V++D T G GG+S +       + ++ALDRD  A+   
Sbjct: 28  HVPVMLRRCLDLLAPALAEPGAVVVDCTLGLGGHSEALLATFPAARLVALDRDKEALRLS 87

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            E +  + ++ +L  A + +L + +   G   V GV+FDLGVSSMQ+D   RGF++ +  
Sbjct: 88  GERLARHGDRATLVHAVYDELPEVLDRLGIPRVQGVLFDLGVSSMQLDEAGRGFAYAQDA 147

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM   +GISA++V+N     DL RIL   GEEKQA RI  A+V  R   PF T+  
Sbjct: 148 PLDMRMDQTTGISAAEVLNTYAPGDLVRILRAYGEEKQARRIVSAVVDERAKEPFTTSAR 207

Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I+  +   +K    +PA R+FQALRI VN E+  L + + +A  +L  GG L V+S
Sbjct: 208 LVEVIRDALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVASLAVGGRLAVLS 267

Query: 250 FHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           +HSLEDRLVK+  A+ +         ++P    P   + +T+   +PT+E+VA NRR+  
Sbjct: 268 YHSLEDRLVKQVLAAGAASTAPPGLPVVPERYQPR-LKLLTRGAELPTEEEVAENRRAAP 326

Query: 309 AKLRAGMRTVERSIE 323
           A+LR   R  E   E
Sbjct: 327 ARLRGAQRIREEHQE 341


>gi|332654098|ref|ZP_08419842.1| S-adenosyl-methyltransferase MraW [Ruminococcaceae bacterium D16]
 gi|332517184|gb|EGJ46789.1| S-adenosyl-methyltransferase MraW [Ruminococcaceae bacterium D16]
          Length = 327

 Score =  211 bits (537), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 124/302 (41%), Positives = 180/302 (59%), Gaps = 10/302 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77
           H PVLL++ I  LN  P  + LD T G  G+SR   +      +I +DRD  A+   Q+ 
Sbjct: 7   HRPVLLDECIEALNIRPDGIYLDGTLGRAGHSREIARRLTTGRLICVDRDQAALDAAQDR 66

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           ++D+ ++ +L  + F QL D + D+    GVDG++FDLGVSS Q+D G RGFS+    PL
Sbjct: 67  LKDWMDRVTLVHSNFDQL-DAILDRLGLAGVDGMLFDLGVSSPQLDDGSRGFSYMADAPL 125

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  S G++A+DVVNQ + ++L RIL   GEE+ A  IA AIV+RRQ  P +TT +L 
Sbjct: 126 DMRMDRSEGLTAADVVNQWSQEELRRILSQYGEERYAPSIAAAIVRRRQDKPIETTLELV 185

Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  +   +   + HPA RSFQA+RI VN+E+  + + +R+A   L  GG L V++FH
Sbjct: 186 DIIKSAMPARALKEKQHPAKRSFQAIRIAVNDELASVDRMVRAAIPRLNKGGRLAVITFH 245

Query: 252 SLEDRLVKKFFAS-RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK   A    G        +         +   +K ++P++ +V  N R+RSAK
Sbjct: 246 SLEDRIVKTDLAEFAKGCTCPPDFPVCVCGKTPDVKLTPRKPILPSEREVEENPRARSAK 305

Query: 311 LR 312
           LR
Sbjct: 306 LR 307


>gi|326779858|ref|ZP_08239123.1| Ribosomal RNA small subunit methyltransferase H [Streptomyces cf.
           griseus XylebKG-1]
 gi|326660191|gb|EGE45037.1| Ribosomal RNA small subunit methyltransferase H [Streptomyces cf.
           griseus XylebKG-1]
          Length = 321

 Score =  211 bits (537), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 124/311 (39%), Positives = 184/311 (59%), Gaps = 15/311 (4%)

Query: 20  HVPVLLEKVIALLNPA------PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAV 71
           HVPV+L++ + LL PA      P  V++D T G GG+S +       + +IALDRD  A+
Sbjct: 6   HVPVMLQRCLDLLAPALQDPAHPEPVVVDCTLGLGGHSEALLASFPAARLIALDRDKEAL 65

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQ 128
               E +  Y ++ +L  A + +L + +   G   V GV+FDLGVSSMQ+D  DRGF++ 
Sbjct: 66  RLSGERLAPYGDRATLVHAVYDELPEVLARLGIPKVQGVLFDLGVSSMQLDEADRGFAYA 125

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           +  PLDMRM  S G+ A++V+N     +L RIL   GEEKQA RI  A+V+ R+  PF  
Sbjct: 126 QDAPLDMRMDQSTGMGAAEVLNTYPPGELVRILRAYGEEKQAKRIVSAVVREREKEPFSN 185

Query: 188 TQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           +  L  LI+  +   +K    +PA R+FQALRI VN E+  L + + +A  +L  GG + 
Sbjct: 186 SARLVELIRDALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVDSLDVGGRIA 245

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           V+S+HSLEDRLVK+ FA+ +         ++P    P + Q +T+   +PT+++VA NRR
Sbjct: 246 VLSYHSLEDRLVKQVFAAGAANTAPPGLPVVPERYQPRLKQ-LTRGAELPTEQEVAENRR 304

Query: 306 SRSAKLRAGMR 316
           +  A+LR   R
Sbjct: 305 AAPARLRGAQR 315


>gi|91094747|ref|XP_971437.1| PREDICTED: similar to s-adenosyl-methyl transferase mraw [Tribolium
           castaneum]
 gi|270010790|gb|EFA07238.1| hypothetical protein TcasGA2_TC010595 [Tribolium castaneum]
          Length = 451

 Score =  211 bits (537), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 129/334 (38%), Positives = 189/334 (56%), Gaps = 44/334 (13%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           HVPV++++V+  L P   + ILD TFGAGG+SR   +   NV  +ALDRDP A    Q+ 
Sbjct: 123 HVPVMVQEVLHFLKPEGNQTILDMTFGAGGHSRRILEQAPNVKLLALDRDPVAFGYAQKL 182

Query: 78  MRDYKEQFSLFQATFSQLQDY-----VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             ++  + +     FS++ +      +    +D ++FD G SSMQ D   RGFS   +GP
Sbjct: 183 AEEFPNRVTPLLGRFSEVPELLSLNKIRQNSIDAILFDFGCSSMQFDTPSRGFSVSHNGP 242

Query: 133 LDMRMSCSGI----SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQT 187
           LDMRM         +A+DV+ +A  +DL +I+ + GEEK+A +IA A+++ R       T
Sbjct: 243 LDMRMDSGRFPEDPTAADVLAKATEEDLYKIIKVYGEEKKARKIARAVIEARYLFKTLST 302

Query: 188 TQDLSSLIQKTVYFSKNNRI-------HPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           T++L+ L+     FS   R+       H AT++FQALRIFVNNE+ E+  GL  A K LK
Sbjct: 303 TEELADLVDSV--FSGEIRLDKLQRPSHNATKTFQALRIFVNNELNEINYGLIIAHKYLK 360

Query: 241 AGGLLIVVSFHSLEDRLVKKF----------------FASRSGKV--MAVRHMIPSNAHP 282
            GG ++ ++FHSLED +VK+                 ++S S  V    V+ ++ SN   
Sbjct: 361 LGGRVVTLTFHSLEDTIVKRHLLGNLIANTPNPLPLKYSSHSFDVDGQIVKEVMESN--- 417

Query: 283 AVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
             + S+TK V+VP  E+V  N RSRSAKLRA +R
Sbjct: 418 --WLSLTKHVLVPKYEEVENNPRSRSAKLRAAIR 449


>gi|263460426|sp|A5G8K8|RSMH_GEOUR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 312

 Score =  211 bits (537), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 129/305 (42%), Positives = 180/305 (59%), Gaps = 13/305 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+ V+  +VI  L P  G + +D T G GG++R   +  +    +I  DRD  A++   E
Sbjct: 6   HISVMAAEVIQYLAPRAGGIYVDGTLGGGGHARQILEASAPDGLLIGFDRDREAIAIAAE 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  Y E+  L Q  F+ L + + + G+D   G + D+GVSS Q+D   RGFSFQ   PL
Sbjct: 66  RLAPYGERVRLVQRNFACLAETLDEMGIDAIDGFLLDVGVSSHQLDTAARGFSFQHDAPL 125

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  S G SASD+VN  +  DL RI+   GEE+ A RIA  IVKRR+ +P +TT  L 
Sbjct: 126 DMRMDVSSGQSASDLVNTLSEADLARIIWDYGEERWAKRIAAFIVKRREESPIETTMQLV 185

Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  V   + + R+HPATR+FQALRI VN+E+  L + L +  + LK GG  +V+SFH
Sbjct: 186 DVIKGAVPRGAWDVRLHPATRTFQALRIAVNDELASLEKALAAGVRFLKKGGRGVVISFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP---SNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SLEDR+VK  F S +      +  IP       P V + IT K V+  + +V+ N RSRS
Sbjct: 246 SLEDRIVKTSFRSFAQGCTCPKS-IPRCVCGKLPLV-KVITGKPVMANEAEVSMNPRSRS 303

Query: 309 AKLRA 313
           A+LRA
Sbjct: 304 ARLRA 308


>gi|213612818|ref|ZP_03370644.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 304

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 126/308 (40%), Positives = 191/308 (62%), Gaps = 19/308 (6%)

Query: 23  VLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQETMR 79
           VLL++ +  LN  P  + +D TFG GG+SR    ++G    ++A+DRDP A++  Q T+ 
Sbjct: 1   VLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAQ-TIN 59

Query: 80  DYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           D +  FS+    FS L DYV ++     +DG++ DLGVSS Q+D  +RGFSF + GPLDM
Sbjct: 60  DPR--FSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFMRDGPLDM 117

Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM  + G SA++ + +A   D+  +L   GEE+ A RIAHAIV+R +  P   T++L+ +
Sbjct: 118 RMDPTRGQSAAEWLQRAEEADIAWVLKTFGEERFAKRIAHAIVERNREQPMTRTKELAEV 177

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           +       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L +GG L ++SFHSLE
Sbjct: 178 VAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLASGGRLSIISFHSLE 236

Query: 255 DRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRSRSA 309
           DR+VK+F    SR  +V A   M  +          +++ K  ++P +++VA N R+RS+
Sbjct: 237 DRIVKRFMREQSRGPQVPAGLPMTEAQLKKLGGRELRALGK--LMPGEKEVAENPRARSS 294

Query: 310 KLRAGMRT 317
            LR   RT
Sbjct: 295 VLRIAERT 302


>gi|156405687|ref|XP_001640863.1| predicted protein [Nematostella vectensis]
 gi|156227999|gb|EDO48800.1| predicted protein [Nematostella vectensis]
          Length = 378

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 132/341 (38%), Positives = 196/341 (57%), Gaps = 34/341 (9%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSC 73
           HT+  H+PV+  + +  L P  G+V +DATFGAGG++ +        V A+DRDP AV  
Sbjct: 32  HTL--HIPVMSRECLGFLAPKDGEVFVDATFGAGGHTCAILNSAKCKVFAVDRDPVAVEI 89

Query: 74  GQ--ETMRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFS 126
            Q   T  +YK Q    Q  FS+L + + + G+     DG++ D+G SSMQ D   RGFS
Sbjct: 90  AQVLSTRPEYKGQLIPLQGKFSELFELLSNNGIKKESLDGMLLDIGPSSMQFDDPLRGFS 149

Query: 127 FQKSGPLDMRMSC---------SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177
             K GPLDMRM           S  +A+DVVN  + ++L  +L   G E+ A+RI+ A++
Sbjct: 150 LSKDGPLDMRMDSENDTKSSRSSSFTAADVVNSISERELISVLRHYGGERDAARISRAVI 209

Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFSKNNRI----HPATRSFQALRIFVNNEIEELAQGLR 233
           K R      TT+ L++++   V F + +++    HPAT++FQALRI VN+E+ EL + L+
Sbjct: 210 KARDREHIMTTRQLAAIVANAVGFGRKDKLNRFAHPATKTFQALRILVNDELNELHKALK 269

Query: 234 SAEKALKAGGLLIVVSFHSLEDRLVKKFF----ASRSGKVMAVRHMIPSNAHPAVFQSIT 289
           +A+K L  GG L+V+SFHS ED +VK F       +S K M       S++    +  + 
Sbjct: 270 AAKKLLTPGGRLVVISFHSAEDSIVKHFLKDEATRKSSKTM-------SDSDSITWLPLH 322

Query: 290 KKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDDSFVHL 330
           KKVV P+ +++ FN R RSAKLRA ++T +  +E     HL
Sbjct: 323 KKVVSPSDDEIFFNPRCRSAKLRAVVKTNKEVLELCQLTHL 363


>gi|298531025|ref|ZP_07018426.1| S-adenosyl-methyltransferase MraW [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509048|gb|EFI32953.1| S-adenosyl-methyltransferase MraW [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 319

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 118/309 (38%), Positives = 180/309 (58%), Gaps = 11/309 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQE 76
           H PV+LEKV+ LL PAPG   LD T G GG+S +    CK   +++ +D D  A+    E
Sbjct: 11  HQPVMLEKVLELLAPAPGGRYLDGTLGLGGHSLAILKACKGECSILGMDMDQEALELVAE 70

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + + +    + Q  F   Q+Y+ +    G+DG + DLG+SS+Q+D  ++GFSF   GPL
Sbjct: 71  NLEEQQGGLHMVQDAFHNFQEYLQELQWPGLDGALLDLGMSSLQLDKKEKGFSFIHDGPL 130

Query: 134 DMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           DMRM  +     AS +V  A+   L +I+  LGEE  A RIA AI++ R+ +P  TT +L
Sbjct: 131 DMRMGLAQGFPPASSLVQNASFSRLKQIIYELGEEPMAPRIARAIIQAREKSPINTTLEL 190

Query: 192 SSLIQKTVYFSKNN--RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           + ++++     +    R HPAT++FQALR+  N E+E L   L      L+ G  L+V+S
Sbjct: 191 ARIVEQAYPAQRRRAARNHPATKTFQALRMATNKELESLQDFLEKIAPWLRPGARLVVIS 250

Query: 250 FHSLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK++   + S  +   R  + S +H    + +T+K +  ++ +++ N RSRS
Sbjct: 251 FHSLEDRMVKQYLRRQASDCICPPRSPVCSCSHRKTLEILTRKPLTASEREISRNPRSRS 310

Query: 309 AKLRAGMRT 317
           AKLRA  R 
Sbjct: 311 AKLRAAQRV 319


>gi|118581697|ref|YP_902947.1| S-adenosyl-methyltransferase MraW [Pelobacter propionicus DSM 2379]
 gi|262824775|sp|A1AU69|RSMH_PELPD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|118504407|gb|ABL00890.1| S-adenosyl-methyltransferase MraW [Pelobacter propionicus DSM 2379]
          Length = 313

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 127/305 (41%), Positives = 177/305 (58%), Gaps = 12/305 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQ 75
           H+ V+ E+V+  L+P PG   LD T G GG++    +     G  +I +DRD  A+    
Sbjct: 6   HLSVMPEEVLRFLSPRPGGCYLDGTLGGGGHAALVAERCAPGGGTLIGMDRDLEALKAAA 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E +  + +   L    F+ +   +   GVD   G V DLGVSS Q+D   RGFSFQ+ G 
Sbjct: 66  ERLSRFGDAVRLLHGNFADIATRLDSLGVDALDGFVLDLGVSSHQLDTARRGFSFQQEGA 125

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM   SG +A+D+VN+    +L RI+   GEE+ A RIA  IV+ R  AP + T  L
Sbjct: 126 LDMRMDGDSGETAADLVNRLPEHELERIIREYGEERWAKRIASFIVRARSEAPIENTLRL 185

Query: 192 SSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+  +  +K   R+HPATR+FQALRI VN+E+E L +GL+SA   LK GG  +V+SF
Sbjct: 186 VDIIKGAIPKAKWEERLHPATRTFQALRIAVNHELESLERGLKSAIDRLKPGGRGVVISF 245

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+VK  F   +      R++        P V + +T + V  T+E++  N RSRS
Sbjct: 246 HSLEDRIVKHVFREYAAGCTCPRNLPVCVCGRQPRV-RVLTGRPVTATEEELRDNPRSRS 304

Query: 309 AKLRA 313
           AKLRA
Sbjct: 305 AKLRA 309


>gi|294628857|ref|ZP_06707417.1| methylase MraW [Streptomyces sp. e14]
 gi|292832190|gb|EFF90539.1| methylase MraW [Streptomyces sp. e14]
          Length = 318

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 128/315 (40%), Positives = 188/315 (59%), Gaps = 13/315 (4%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74
           HVPV+L++ + LL PA   PG V++D T G GG+S +       + +I LDRD  A+   
Sbjct: 6   HVPVMLQRCLDLLAPALERPGAVVVDCTLGLGGHSEALLTRFPEARLIGLDRDKEALRLS 65

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            E +  + ++ +L  A + +L D +   G   V GV+FDLGVSSMQ+D  DRGF++ +  
Sbjct: 66  GERLAPFGDRATLVHAVYDELPDVLDRLGIVRVQGVLFDLGVSSMQLDEADRGFAYAQDA 125

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM   +GISA++V+N     +L RIL   GEEKQA RI  AIV+ R+  PF  +  
Sbjct: 126 PLDMRMDQTTGISAAEVLNTYPPGELVRILRAYGEEKQAKRIVAAIVREREKEPFAHSAR 185

Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  LI+  +   +K    +PA R+FQALRI VN E+  L + + +A KAL  GG + V+S
Sbjct: 186 LVELIRDALPQAAKRTGGNPAKRTFQALRIEVNGELAVLERAVPAAVKALDVGGRIAVLS 245

Query: 250 FHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           + SLEDRLVK+ FA+ +         ++P    P   + +T+   +PT+E++A NRR+  
Sbjct: 246 YQSLEDRLVKQVFAAGAATTAPPGLPVVPERYQPR-LKLLTRGAELPTEEEIAENRRAAP 304

Query: 309 AKLRAGMRTVERSIE 323
           A+LR G+  V   +E
Sbjct: 305 ARLR-GVERVRADVE 318


>gi|332142432|ref|YP_004428170.1| 16S rRNA m(4)C1402 methyltranserfase [Alteromonas macleodii str.
           'Deep ecotype']
 gi|263446686|sp|B4RWY7|RSMH_ALTMD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|327552454|gb|AEA99172.1| 16S rRNA m(4)C1402 methyltranserfase [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 313

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 127/305 (41%), Positives = 182/305 (59%), Gaps = 17/305 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76
           H+ VLL++ I  L   P  + +DATFG GG+S      +G    +IA DRDP A+   + 
Sbjct: 9   HISVLLDECIEALAIKPNGIYIDATFGRGGHSAHILDALGEKGRLIAFDRDPQAIKAAER 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              D  ++FS+  + F  + + +   G    +DGV+ DLGVSS Q+D  +RGFSF + GP
Sbjct: 69  FADD--KRFSIIHSPFGDMAEEIEALGLTGKIDGVLMDLGVSSPQLDDAERGFSFLRDGP 126

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G SA+D +  A  +D+T+++   GEEK   RIAHAIV  R+  P   T  L
Sbjct: 127 LDMRMDTSRGQSAADWLASAEEQDITQVIKEFGEEKFGKRIAHAIVNTRKDTPITRTAQL 186

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + +I + V   K+   HPATR+FQ +RI++N E+E+L  GL++A + L   G L V+SFH
Sbjct: 187 AKIIDEAVPV-KDKFKHPATRAFQGIRIYINAELEQLRVGLKAATQVLAKEGRLAVISFH 245

Query: 252 SLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITK---KVVVPTQEDVAFNRRSR 307
           SLEDRLVK+F   +S GKV  V H +P          + K   K + P+++++A N RSR
Sbjct: 246 SLEDRLVKRFIKDQSKGKV--VPHNLPITQAEIDADKVLKALGKAIKPSEQEIANNVRSR 303

Query: 308 SAKLR 312
           S+ LR
Sbjct: 304 SSVLR 308


>gi|254525262|ref|ZP_05137317.1| S-adenosyl-methyltransferase MraW [Stenotrophomonas sp. SKA14]
 gi|219722853|gb|EED41378.1| S-adenosyl-methyltransferase MraW [Stenotrophomonas sp. SKA14]
          Length = 322

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 122/304 (40%), Positives = 182/304 (59%), Gaps = 12/304 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H+PVL  +V+  L        LD TFG GG++R    ++G    ++ +D+DP A++  + 
Sbjct: 19  HLPVLYTQVLEGLRVIENGRYLDGTFGRGGHARGVLTQLGPEGRLLVMDKDPEAIAVAE- 77

Query: 77  TMRDY--KEQFSLFQATFSQLQDY-VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             RD+    + S+F+ +F+QL  +     G+DGV+FDLGVSS Q+D  +RGFSF K GPL
Sbjct: 78  --RDFAPDPRVSIFRGSFAQLLQWDATADGLDGVLFDLGVSSPQLDVAERGFSFGKDGPL 135

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM   SG SA+  +N+   +++  +L   GEE+Q+ RIA AIV RR+  PF  T +L+
Sbjct: 136 DMRMDPDSGESAAQWINRVEDREIADVLWTYGEERQSRRIARAIVARREKQPFTRTAELA 195

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            L+   +   K+ +IHPATRSFQA+RI +N E+ +L  GL +A + LK GG L ++SFHS
Sbjct: 196 ELVASVMPRGKD-KIHPATRSFQAIRIHINRELADLEAGLDAAVERLKPGGRLAIISFHS 254

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK++  +R  K       +P          +    +  T E++A N R+RSA LR
Sbjct: 255 LEDRIVKQYM-NRLAKAPPANRRLPEAEVFVPTLDLIGGAIKATDEELAANPRARSAVLR 313

Query: 313 AGMR 316
              +
Sbjct: 314 VAQK 317


>gi|182439206|ref|YP_001826925.1| putative S-adenosylmethionine-dependent methyltransferase
           [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|262826728|sp|B1W0I2|RSMH_STRGG RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|178467722|dbj|BAG22242.1| putative S-adenosylmethionine-dependent methyltransferase
           [Streptomyces griseus subsp. griseus NBRC 13350]
          Length = 321

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 124/311 (39%), Positives = 184/311 (59%), Gaps = 15/311 (4%)

Query: 20  HVPVLLEKVIALLNPA------PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAV 71
           HVPV+L++ + LL PA      P  V++D T G GG+S +       + +IALDRD  A+
Sbjct: 6   HVPVMLQRCLDLLAPALQDPAHPEPVVVDCTLGLGGHSEALLASFPTARLIALDRDKEAL 65

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQ 128
               E +  Y ++ +L  A + +L + +   G   V GV+FDLGVSSMQ+D  DRGF++ 
Sbjct: 66  RLSGERLAPYGDRATLVHAVYDELPEVLARLGIPKVQGVLFDLGVSSMQLDEADRGFAYA 125

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           +  PLDMRM  S G+ A++V+N     +L RIL   GEEKQA RI  A+V+ R+  PF  
Sbjct: 126 QDAPLDMRMDQSTGMGAAEVLNTYPPGELVRILRAYGEEKQAKRIVSAVVREREKEPFSN 185

Query: 188 TQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           +  L  LI+  +   +K    +PA R+FQALRI VN E+  L + + +A  +L  GG + 
Sbjct: 186 SARLVELIRDALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVDSLDVGGRIA 245

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           V+S+HSLEDRLVK+ FA+ +         ++P    P + Q +T+   +PT+++VA NRR
Sbjct: 246 VLSYHSLEDRLVKQVFAAGAANTAPPGLPVVPERYQPRLKQ-LTRGAELPTEQEVAENRR 304

Query: 306 SRSAKLRAGMR 316
           +  A+LR   R
Sbjct: 305 AAPARLRGAQR 315


>gi|239996439|ref|ZP_04716963.1| S-adenosyl-methyltransferase MraW [Alteromonas macleodii ATCC
           27126]
          Length = 313

 Score =  210 bits (535), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 125/304 (41%), Positives = 182/304 (59%), Gaps = 15/304 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76
           H+ VLL++ I  L   P  + +DATFG GG+S      +G +  +IA DRDP A+   + 
Sbjct: 9   HISVLLDECIEALAIKPNGIYIDATFGRGGHSAHILDALGEHGRLIAFDRDPQAIKAAER 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              D  ++FS+  + F  + + +   G    +DGV+ DLGVSS Q+D  +RGFSF + GP
Sbjct: 69  FADD--KRFSIIHSPFGDMAEEIEALGLTGKIDGVLMDLGVSSPQLDDAERGFSFLRDGP 126

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G SA+D +  A  +D+T+++   GEEK   RIAHAIV  R+  P   T  L
Sbjct: 127 LDMRMDTSRGQSAADWLANAEEQDITQVIKEFGEEKFGKRIAHAIVNTRKETPITRTAQL 186

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + +I + V   K+   HPATR+FQ +RI++N E+E+L  GL++A + L   G L V+SFH
Sbjct: 187 AKIIDEAVPV-KDKFKHPATRAFQGIRIYINAELEQLRVGLKAATQVLAKEGRLAVISFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK---KVVVPTQEDVAFNRRSRS 308
           SLEDRLVK+F   +S K  +V H +P          + K   K + P+++++A N RSRS
Sbjct: 246 SLEDRLVKRFIKDQS-KGKSVPHNLPITQAEIDADKVLKALGKAIKPSEQEIANNVRSRS 304

Query: 309 AKLR 312
           + LR
Sbjct: 305 SVLR 308


>gi|254391587|ref|ZP_05006786.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Streptomyces clavuligerus ATCC 27064]
 gi|294812140|ref|ZP_06770783.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Streptomyces clavuligerus ATCC 27064]
 gi|197705273|gb|EDY51085.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Streptomyces clavuligerus ATCC 27064]
 gi|294324739|gb|EFG06382.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Streptomyces clavuligerus ATCC 27064]
          Length = 318

 Score =  210 bits (535), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 130/311 (41%), Positives = 185/311 (59%), Gaps = 12/311 (3%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74
           HVPV+L++ + LL PA   PG V++D T G GG+S +      G  +IALDRDP A+   
Sbjct: 6   HVPVMLQRCLDLLAPALESPGAVVVDCTLGLGGHSEALLSRFPGVRLIALDRDPEALRLS 65

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            E +  Y E+ +L  A + +L   +   GV    GV+FDLGVSSMQ+D  DRGF++ +  
Sbjct: 66  AERLAPYGERATLVHAVYDELPAVLARLGVPRVQGVLFDLGVSSMQLDEADRGFAYAQDA 125

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM   +G+SA++V+N     +L RIL   GEEKQA RI  AIV+ R + PF T+  
Sbjct: 126 PLDMRMDQTTGMSAAEVLNTYPPGELVRILRAYGEEKQAKRIVSAIVRERVNEPFSTSAR 185

Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  LI+  +   +K    +PA R+FQALRI VN E+  L + + +A  AL   G + V+S
Sbjct: 186 LVELIRDALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAVPAAVAALAVEGRIAVLS 245

Query: 250 FHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           +HSLEDRLVK+ FA+ +         ++P    P   + +T+   +PT ++VA NRR+  
Sbjct: 246 YHSLEDRLVKQVFAAGAATTAPPGLPVVPEEYQPR-LRLLTRGAELPTDDEVAENRRAAP 304

Query: 309 AKLRAGMRTVE 319
           A+LR   R  E
Sbjct: 305 ARLRGAQRIRE 315


>gi|154706930|ref|YP_001425301.1| S-adenosyl-methyltransferase MraW [Coxiella burnetii Dugway
           5J108-111]
 gi|263446157|sp|A9KET2|RSMH_COXBN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|154356216|gb|ABS77678.1| S-adenosyl-methyltransferase [Coxiella burnetii Dugway 5J108-111]
          Length = 307

 Score =  210 bits (535), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 124/307 (40%), Positives = 185/307 (60%), Gaps = 23/307 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQE 76
           H PVL ++V+  L   P  + +D TFG GG+S     ++G N  ++A+D+DP AV+   +
Sbjct: 4   HKPVLFDEVMEGLAIRPDGIYVDGTFGRGGHSFGILQRLGPNGRLMAMDKDPDAVAVANK 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            + +   +FS+   TF+ LQ  V D+G    V+G++ D+GVSS Q++   RGFSF K GP
Sbjct: 64  ALFE-DARFSIVHETFANLQKAVRDRGWEGKVNGILLDIGVSSPQLEDAKRGFSFSKDGP 122

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+    + A+  +NQA ++D+ R+L   GEE+ A RIA AIV  R+  P   TQ+L
Sbjct: 123 LDMRMNPKQSMDAASWINQAAMEDIRRVLWNYGEERFAKRIAQAIVNAREEKPITRTQEL 182

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           S ++ K  Y  +  + HPATR+FQA+RIF+N E++EL + L    + L  GG L V+SFH
Sbjct: 183 SDIVIKA-YPQRKIKKHPATRTFQAIRIFINRELDELRECLPQCLETLAVGGRLCVISFH 241

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKK------VVVPTQEDVAFNRR 305
           SLEDRLVK+F    S      R  +P    P + + I  +      ++ PT+ ++  N R
Sbjct: 242 SLEDRLVKRFIQKES------RDHLPREI-PILAKDIKHRLKPLGSLIRPTEAEIKKNPR 294

Query: 306 SRSAKLR 312
           +RSA+LR
Sbjct: 295 ARSARLR 301


>gi|29653474|ref|NP_819166.1| S-adenosyl-methyltransferase [Coxiella burnetii RSA 493]
 gi|153207124|ref|ZP_01945903.1| S-adenosyl-methyltransferase MraW [Coxiella burnetii 'MSU Goat
           Q177']
 gi|161830127|ref|YP_001596084.1| S-adenosyl-methyltransferase MraW [Coxiella burnetii RSA 331]
 gi|165918373|ref|ZP_02218459.1| S-adenosyl-methyltransferase MraW [Coxiella burnetii RSA 334]
 gi|212219401|ref|YP_002306188.1| S-adenosyl-methyltransferase MraW [Coxiella burnetii CbuK_Q154]
 gi|42559465|sp|Q83F35|RSMH_COXBU RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446160|sp|A9NA25|RSMH_COXBR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263447414|sp|B6J5L7|RSMH_COXB1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|29540736|gb|AAO89680.1| S-adenosyl-methyltransferase [Coxiella burnetii RSA 493]
 gi|120576785|gb|EAX33409.1| S-adenosyl-methyltransferase MraW [Coxiella burnetii 'MSU Goat
           Q177']
 gi|161761994|gb|ABX77636.1| S-adenosyl-methyltransferase MraW [Coxiella burnetii RSA 331]
 gi|165917879|gb|EDR36483.1| S-adenosyl-methyltransferase MraW [Coxiella burnetii RSA 334]
 gi|212013663|gb|ACJ21043.1| S-adenosyl-methyltransferase [Coxiella burnetii CbuK_Q154]
          Length = 307

 Score =  210 bits (535), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 124/307 (40%), Positives = 185/307 (60%), Gaps = 23/307 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQE 76
           H PVL ++V+  L   P  + +D TFG GG+S     ++G N  ++A+D+DP AV+   +
Sbjct: 4   HKPVLFDEVMEGLAIRPDGIYVDGTFGRGGHSFGILQRLGPNGRLMAMDKDPDAVAVANK 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            + +   +FS+   TF+ LQ  V D+G    V+G++ D+GVSS Q++   RGFSF K GP
Sbjct: 64  ALFE-DARFSIVHETFANLQKAVRDRGWEGKVNGILLDIGVSSPQLEDAKRGFSFSKDGP 122

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+    + A+  +NQA ++D+ R+L   GEE+ A RIA AIV  R+  P   TQ+L
Sbjct: 123 LDMRMNPKQSMDAASWINQAAMEDIRRVLWNYGEERFAKRIAQAIVNAREEKPITRTQEL 182

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           S ++ K  Y  +  + HPATR+FQA+RIF+N E++EL + L    + L  GG L V+SFH
Sbjct: 183 SDIVIKA-YPQREIKKHPATRTFQAIRIFINRELDELRECLPQCLETLAVGGRLCVISFH 241

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKK------VVVPTQEDVAFNRR 305
           SLEDRLVK+F    S      R  +P    P + + I  +      ++ PT+ ++  N R
Sbjct: 242 SLEDRLVKRFIQKES------RDHLPREI-PILAKDIKHRLKPLGSLIRPTEAEIKKNPR 294

Query: 306 SRSAKLR 312
           +RSA+LR
Sbjct: 295 ARSARLR 301


>gi|206580699|ref|YP_002240446.1| S-adenosyl-methyltransferase MraW [Klebsiella pneumoniae 342]
 gi|288937146|ref|YP_003441205.1| S-adenosyl-methyltransferase MraW [Klebsiella variicola At-22]
 gi|290512569|ref|ZP_06551935.1| S-adenosyl-methyltransferase MraW [Klebsiella sp. 1_1_55]
 gi|263456192|sp|B5Y1V5|RSMH_KLEP3 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|206569757|gb|ACI11533.1| S-adenosyl-methyltransferase MraW [Klebsiella pneumoniae 342]
 gi|288891855|gb|ADC60173.1| S-adenosyl-methyltransferase MraW [Klebsiella variicola At-22]
 gi|289774910|gb|EFD82912.1| S-adenosyl-methyltransferase MraW [Klebsiella sp. 1_1_55]
          Length = 313

 Score =  210 bits (535), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 126/311 (40%), Positives = 191/311 (61%), Gaps = 19/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN  P  + +D TFG GG+SR    ++G+   ++A+DRDP A++  + 
Sbjct: 7   HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSRLGAEGRLLAIDRDPQAIAVAK- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           T+ D +  FS+    FSQL DYV ++     +DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 66  TIDDPR--FSIVHGPFSQLADYVDERNLTGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G SA++ +  A   D+  ++   GEE+   RIA AIV+R +  P   T++L
Sbjct: 124 LDMRMDPTRGQSAAEWLQTAEEADIAWVIKTFGEERFGKRIARAIVERNRIEPMTRTKEL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + +I   +   K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L ++SFH
Sbjct: 184 AEVIAAAMPV-KDKHKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSIISFH 242

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306
           SLEDR+VK+F    SR  +V A   M  +          +++ K  ++P +E+VA N R+
Sbjct: 243 SLEDRIVKRFMREQSRGPQVPAGIPMTEAQLKKLGGRELRALGK--LMPGEEEVAENPRA 300

Query: 307 RSAKLRAGMRT 317
           RS+ LR   RT
Sbjct: 301 RSSVLRIAERT 311


>gi|254456040|ref|ZP_05069469.1| S-adenosyl-methyltransferase MraW [Candidatus Pelagibacter sp.
           HTCC7211]
 gi|207083042|gb|EDZ60468.1| S-adenosyl-methyltransferase MraW [Candidatus Pelagibacter sp.
           HTCC7211]
          Length = 336

 Score =  210 bits (535), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 119/310 (38%), Positives = 180/310 (58%), Gaps = 4/310 (1%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRD 67
           M + I   +  H PVLL+++I++ +P  G   +D TFG GGYS+       +++IALDRD
Sbjct: 1   MEATIVSELQKHYPVLLKEIISVFSPQHGGTFIDCTFGQGGYSKKILDFENTSIIALDRD 60

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDY-VPDKGVDGVVFDLGVSSMQIDCGDRGFS 126
             +     +   +++++F      FSQL +  + ++ + GV+FDLG S  QI    +G S
Sbjct: 61  VESEKIANKFKENFEDRFIFKNIKFSQLNNLKLKNENIRGVIFDLGYSYTQIKDPLKGLS 120

Query: 127 FQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           F+  G L+M++  +  SA D +N+ + K+L +I    G+EK+   IA  I+K R      
Sbjct: 121 FEADGKLNMQLGLNSYSAEDAINKLDEKELEKIFKFFGDEKEGKYIARNIIKERLKNKID 180

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T + L  +I K+    KN ++H AT+ FQALRIFVN EI EL  GL +A K LK GG+L 
Sbjct: 181 T-RALVEIIDKSKK-RKNFKVHNATKVFQALRIFVNKEISELIYGLINATKVLKKGGILG 238

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           VV+FHSLED++VK FF S S      R+   +     +F  I KK ++P+ E+V+ N  S
Sbjct: 239 VVTFHSLEDKIVKYFFKSLSENKSISRYSPVTEQSETLFNLIQKKPILPSDEEVSENPPS 298

Query: 307 RSAKLRAGMR 316
           RSAK R  ++
Sbjct: 299 RSAKFRYVIK 308


>gi|320334677|ref|YP_004171388.1| ribosomal RNA small subunit methyltransferase H [Deinococcus
           maricopensis DSM 21211]
 gi|319755966|gb|ADV67723.1| Ribosomal RNA small subunit methyltransferase H [Deinococcus
           maricopensis DSM 21211]
          Length = 295

 Score =  210 bits (534), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 117/303 (38%), Positives = 165/303 (54%), Gaps = 23/303 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+PVL  +V+  L P PG+V +D T G  G++R     G+ V  +D+DP+A+   +    
Sbjct: 9   HIPVLATEVLDALQPQPGQVFVDGTLGGAGHTRLLLAAGATVYGIDQDPYALERNRAAGL 68

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
           +      + +  F  ++  + D GVD   GV+ D+GVSS Q+D   RGFS+    PLDMR
Sbjct: 69  N---GLHVLEGNFRDMRALLNDAGVDHVDGVLLDIGVSSFQLDDAARGFSYHTEAPLDMR 125

Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
           MS  G SA+D+VN     DL  I+   GEE+ + RIA  IV  R   P  TT  L+ +I+
Sbjct: 126 MSQGGDSAADLVNDMEEADLAAIIFEYGEERHSRRIARGIVNARDKGPISTTTQLADIIK 185

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
           +         IHPA R+FQALRI VN+E+  L  GL+ A   L+ GG L V+SFHSLEDR
Sbjct: 186 RAYPGGHARGIHPARRTFQALRIAVNDELGALRDGLQGASDLLRPGGRLAVISFHSLEDR 245

Query: 257 LVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           +VK+F                  A P     +TK+ +   +++ A N R+RSAKLR   +
Sbjct: 246 IVKRFLL----------------ADP-TLDPLTKRPIEAAEDEQARNPRARSAKLRGARK 288

Query: 317 TVE 319
             E
Sbjct: 289 RAE 291


>gi|320011279|gb|ADW06129.1| S-adenosyl-methyltransferase MraW [Streptomyces flavogriseus ATCC
           33331]
          Length = 321

 Score =  210 bits (534), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 123/314 (39%), Positives = 185/314 (58%), Gaps = 15/314 (4%)

Query: 20  HVPVLLEKVIALLNPA------PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAV 71
           HVPV+L++ + LL PA         V++D T G GG+S +       + ++ALDRD  A+
Sbjct: 6   HVPVMLQRCLDLLAPALEATGPQPPVVVDCTLGLGGHSEALLAAFPAARLVALDRDKEAL 65

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQ 128
               E +  Y ++ +L  A + +L + +   G   V GV+FDLGVSSMQ+D  DRGF++ 
Sbjct: 66  RLSGERLAPYGDRATLVHAVYDELPEVLDRLGIPKVQGVLFDLGVSSMQLDEADRGFAYA 125

Query: 129 KSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           +  PLDMRM   +GI A++V+N     +L RIL   GEEKQA RI  A+V+ R+  PF  
Sbjct: 126 QDAPLDMRMDQTTGIGAAEVLNTYPPGELVRILRAYGEEKQAKRIVSAVVREREKEPFSN 185

Query: 188 TQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           +  L  LI+ ++   +K    +PA R+FQALRI VN E+  L + + +A ++L  GG + 
Sbjct: 186 SARLVELIRDSLPQAAKRTGGNPAKRTFQALRIEVNGELTVLERAVPAAVRSLAVGGRIA 245

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           V+S+HSLEDRLVK+ FA+ +         ++P    P   + +T+   +PT+E+VA NRR
Sbjct: 246 VLSYHSLEDRLVKQVFAAGAANTAPPGLPVVPERYQPR-LKLLTRGAELPTEEEVAENRR 304

Query: 306 SRSAKLRAGMRTVE 319
           +  A+LR   R  E
Sbjct: 305 AAPARLRGAQRIRE 318


>gi|225175505|ref|ZP_03729499.1| S-adenosyl-methyltransferase MraW [Dethiobacter alkaliphilus AHT 1]
 gi|225168834|gb|EEG77634.1| S-adenosyl-methyltransferase MraW [Dethiobacter alkaliphilus AHT 1]
          Length = 320

 Score =  210 bits (534), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 124/310 (40%), Positives = 188/310 (60%), Gaps = 12/310 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H PVLL++ ++ L P PG+V +D T G GG+SR+  +       +IA+D+D  A++  +E
Sbjct: 6   HEPVLLQETLSALAPRPGEVFVDGTVGGGGHSRAILEKITPHGRLIAIDQDKNALAAAKE 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           T+  ++E  +     F+ LQD +  +GV   DG++ D+GVSS Q+D G+RGFSF    PL
Sbjct: 66  TLAPWREHVTFVHNNFANLQDVLESEGVQKVDGILLDIGVSSHQLDEGERGFSFNTEAPL 125

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQTTQDL 191
           DMRM+   G++A+ +VN+ + ++LTRIL   GEE  A RIA  +V RR++  P +TT  L
Sbjct: 126 DMRMNRDKGVTAAQLVNELDAEELTRILRDYGEELWARRIAEFMVARRKNHGPIETTGQL 185

Query: 192 SSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+  +      R  HPA R+FQALRI VN+E+  L + +      LK GG L V++F
Sbjct: 186 VDVIKAAIPARARRRGPHPARRTFQALRIAVNDELGVLERAVNDGIDCLKTGGRLAVITF 245

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNA--HPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+VKK F  R+        + P  A  + A  + +T K V   ++++  N R+RS
Sbjct: 246 HSLEDRMVKKIFQHRAAGCQCPPGL-PQCACGNQAHVKILTGKPVQAKEDELERNPRARS 304

Query: 309 AKLRAGMRTV 318
           AKLRA ++ +
Sbjct: 305 AKLRAVIKVL 314


>gi|261338924|ref|ZP_05966782.1| hypothetical protein ENTCAN_05122 [Enterobacter cancerogenus ATCC
           35316]
 gi|288318749|gb|EFC57687.1| S-adenosyl-methyltransferase MraW [Enterobacter cancerogenus ATCC
           35316]
          Length = 313

 Score =  210 bits (534), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 128/311 (41%), Positives = 190/311 (61%), Gaps = 19/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN  P  + +D TFG GG+SR    ++G+   ++A+DRDP A++  Q 
Sbjct: 7   HTTVLLDEAVNGLNIRPDGIYVDGTFGRGGHSRLILSQLGAEGRLLAIDRDPQAIAVAQ- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           T+ D +  FS+    FS L DYV ++G    +DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 66  TIDDPR--FSIVHGPFSALADYVAERGLTGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G SA++ +  A+  D+  ++   GEE+   RIA AIV+R +  P   T++L
Sbjct: 124 LDMRMDPTRGQSAAEWLQTADEADIAWVIKTFGEERFGKRIARAIVERNRIEPMTRTKEL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + +I       K+   HPATR+FQA+RI+VN+E+EE+   L+S+   L  GG L V+SFH
Sbjct: 184 AEVIAAATPV-KDKHKHPATRTFQAVRIWVNSELEEIELALKSSLDVLAPGGRLSVISFH 242

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIP---SNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           SLEDR+VK+F    SR  +V A   M     S       +++ K  ++P +E+VA N R+
Sbjct: 243 SLEDRIVKRFMREQSRGPQVPAGLPMTEEQLSKLGGRQLRALGK--LMPGEEEVAENPRA 300

Query: 307 RSAKLRAGMRT 317
           RS+ LR   RT
Sbjct: 301 RSSVLRVAERT 311


>gi|88608489|ref|YP_506785.1| S-adenosyl-methyltransferase MraW [Neorickettsia sennetsu str.
           Miyayama]
 gi|123491328|sp|Q2GCL1|RSMH_NEOSM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|88600658|gb|ABD46126.1| S-adenosyl-methyltransferase MraW [Neorickettsia sennetsu str.
           Miyayama]
          Length = 296

 Score =  210 bits (534), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 121/295 (41%), Positives = 170/295 (57%), Gaps = 18/295 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSNVIALDRDPFAVSCGQETM 78
           H PVLL + +  L P  G V +DATFGAGGY+R+    +   V A+DRD       Q   
Sbjct: 13  HKPVLLSEALKFLAPKNGGVYVDATFGAGGYTRAILSSVDCFVYAIDRDETVRRFFQVIE 72

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138
            D+ ++ +     F  +   + +  VDG+VFDLGVS+MQ+   DRGFSF   GPLDMRM 
Sbjct: 73  NDFPKRTNFINGNFVDIGSLLGEVKVDGIVFDLGVSTMQLKVADRGFSFLHEGPLDMRMD 132

Query: 139 CSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK 197
            S + +A  VVN      +  I+   GEE+ + +IAHAIV  R+     TT  L+ ++ +
Sbjct: 133 RSTLLTAETVVNSYTEVKIASIIYQFGEERMSRKIAHAIVNARRKKRITTTSSLAEIV-R 191

Query: 198 TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRL 257
           + +  +  +I PAT++FQALRIF+N+E+  L  GLR+A   LK G   +VVSFHSLEDR+
Sbjct: 192 SCFPKRYYKIDPATKTFQALRIFINDELGALECGLRTALTMLKVGSRAVVVSFHSLEDRI 251

Query: 258 VKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           VK  F S                H   F  +TKK+VVP++++V  N  SRSA++R
Sbjct: 252 VKHLFRS---------------VHGNGFNLLTKKIVVPSRDEVRENPSSRSARMR 291


>gi|152968667|ref|YP_001333776.1| S-adenosyl-methyltransferase MraW [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238893062|ref|YP_002917796.1| S-adenosyl-methyltransferase MraW [Klebsiella pneumoniae
           NTUH-K2044]
 gi|262044874|ref|ZP_06017917.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
 gi|330012015|ref|ZP_08307232.1| S-adenosyl-methyltransferase MraW [Klebsiella sp. MS 92-3]
 gi|263456196|sp|A6T4M5|RSMH_KLEP7 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|150953516|gb|ABR75546.1| S-adenosyl-methyltransferase [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238545378|dbj|BAH61729.1| S-adenosyl-methyltransferase [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|259037843|gb|EEW39071.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
 gi|328534004|gb|EGF60656.1| S-adenosyl-methyltransferase MraW [Klebsiella sp. MS 92-3]
          Length = 313

 Score =  209 bits (533), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 126/311 (40%), Positives = 191/311 (61%), Gaps = 19/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN  P  + +D TFG GG+SR    ++G+   ++A+DRDP A++  Q 
Sbjct: 7   HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSRLGAEGRLLAIDRDPQAIAVAQ- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           T+ D +  FS+    FSQL +YV ++     +DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 66  TIDDPR--FSIVHGPFSQLAEYVGERNLTGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G SA++ +  A   D+  ++   GEE+   RIA AIV+R +  P   T++L
Sbjct: 124 LDMRMDPTRGQSAAEWLQTAEEDDIAWVIKTFGEERFGKRIARAIVERNRIQPMTRTKEL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + +I   +   K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L ++SFH
Sbjct: 184 AEVIAAAMPV-KDKHKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSIISFH 242

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306
           SLEDR+VK+F    SR  +V A   M  +          +++ K  ++P +E+VA N R+
Sbjct: 243 SLEDRIVKRFMREQSRGPQVPAGIPMTEAQLKKLGGRELRALGK--LMPGEEEVAENPRA 300

Query: 307 RSAKLRAGMRT 317
           RS+ LR   RT
Sbjct: 301 RSSVLRIAERT 311


>gi|315125595|ref|YP_004067598.1| S-adenosyl-methyltransferase MraW [Pseudoalteromonas sp. SM9913]
 gi|315014108|gb|ADT67446.1| S-adenosyl-methyltransferase MraW [Pseudoalteromonas sp. SM9913]
          Length = 312

 Score =  209 bits (533), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 125/310 (40%), Positives = 191/310 (61%), Gaps = 17/310 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYS-RSFCKMGSN--VIALDRDPFAVSCGQ 75
           +HV VL+++ I  L   P  + +D TFG GG+S +   ++G +  + A+D+DP A+   +
Sbjct: 6   EHVSVLMDETIDALAIKPDGIYMDGTFGRGGHSGQILARLGESGRLQAIDQDPQAIKSAE 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +   D +  FS+  + FS+L +          VDG++ D+GVSS Q+D   RGFSF K G
Sbjct: 66  KFADDPR--FSIAHSRFSKLYEVAEQNDLIGQVDGILLDIGVSSPQLDDAARGFSFMKDG 123

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  S G SA+  + +A + D+T ++  LGEEK   RIAH I++ R+  P  TT+ 
Sbjct: 124 PLDMRMDPSTGRSAAQWLAEAELDDITHVIKKLGEEKFGKRIAHKILEVREHTPITTTKQ 183

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ L+ + V   K+   HPATR+FQA+RI++N+E+EE+   L++A K LK GG L+V+SF
Sbjct: 184 LADLVDEAVPV-KDKFKHPATRTFQAIRIYINSELEEIQTALQAAIKVLKPGGRLVVISF 242

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV----VPTQEDVAFNRRS 306
           HSLEDR+VK+F   +S      R +  ++A   + +++T K V     P+ ++VA N RS
Sbjct: 243 HSLEDRIVKQFIKKQSKGEAIPRGLPLTDAQ--INKNLTLKAVGKAIKPSADEVARNPRS 300

Query: 307 RSAKLRAGMR 316
           RS+ LR   R
Sbjct: 301 RSSVLRIAQR 310


>gi|114045888|ref|YP_736438.1| S-adenosyl-methyltransferase MraW [Shewanella sp. MR-7]
 gi|123030979|sp|Q0HZS4|RSMH_SHESR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|113887330|gb|ABI41381.1| S-adenosyl-methyltransferase MraW [Shewanella sp. MR-7]
          Length = 313

 Score =  209 bits (532), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 121/308 (39%), Positives = 179/308 (58%), Gaps = 15/308 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQE 76
           H+ VLLE+ +  LN     + +D TFG GG+SR    ++G N  +IA+DRDP A+   ++
Sbjct: 7   HLSVLLEETVGGLNIKDDGIYIDGTFGRGGHSRQILQRLGENGRLIAIDRDPQAIEAAKQ 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              D +  F +    F QL DYV + G    +DGV+ DLGVSS Q+D  +RGFSF + GP
Sbjct: 67  FADDPR--FQIVHGGFGQLADYVEELGLVGKIDGVLLDLGVSSPQLDDAERGFSFLRDGP 124

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G +A+  + +A ++D+  +    GEEK A  IA  I   R   PF  T+DL
Sbjct: 125 LDMRMDNSQGETAAQWLARAEIEDMAWVFKTYGEEKNARHIARCIAADRDKTPFLRTKDL 184

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI +     + N+ HPATR FQA+RI++N+E++++ Q L  A   L   G L ++SFH
Sbjct: 185 ADLIARITKNKERNK-HPATRVFQAIRIYINSELDQIDQALEGALTVLAPQGRLSIISFH 243

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP---SNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SLEDR+VK+F   R  +  +V H +P      + +       K ++P+ E++  N R+RS
Sbjct: 244 SLEDRIVKRFI-RRHSQGESVPHGLPITEDQINKSRKLRAIGKAIMPSDEEIERNARARS 302

Query: 309 AKLRAGMR 316
           + LR   R
Sbjct: 303 SVLRIAER 310


>gi|121611471|ref|YP_999278.1| S-adenosyl-methyltransferase MraW [Verminephrobacter eiseniae
           EF01-2]
 gi|263504490|sp|A1WRK3|RSMH_VEREI RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|121556111|gb|ABM60260.1| S-adenosyl-methyltransferase MraW [Verminephrobacter eiseniae
           EF01-2]
          Length = 334

 Score =  209 bits (532), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 134/314 (42%), Positives = 187/314 (59%), Gaps = 14/314 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALD 65
           MSSA  HT     P + + ++A   PAP    +DATFG GG++R   C++G    ++A D
Sbjct: 1   MSSAPCHTTVLREPAV-DALLARAGPAPAGTWVDATFGRGGHTRLILCRLGPQGRLVAFD 59

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125
           +DP A++   E MR    +FS+    F QL   +P   + GV+ DLGVSS QID  +RGF
Sbjct: 60  KDPEAIA---EAMRITDARFSIRHQGFGQL-GQLPAGSLAGVLMDLGVSSPQIDSPERGF 115

Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-A 183
           SF+  GPLDMRM  + G+SA+D +  A+   + ++L   GEE+ A  IA AIV RRQ+  
Sbjct: 116 SFRFDGPLDMRMDTTRGLSAADWLATADAGQIAQVLRDYGEERFAGLIAKAIVARRQARG 175

Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
           P   T +L+ L+   V   +  + +PATR+FQALRIF+N E+EEL Q L ++   L+ GG
Sbjct: 176 PLARTAELADLVAGAVKTREPGQ-NPATRTFQALRIFINAELEELQQALAASLLVLQPGG 234

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            L+V+SFHSLEDR+VK+F A  S +    R  +P  A P   Q +    V P   +VA N
Sbjct: 235 RLVVLSFHSLEDRIVKQFIARHSRQPFDRR--VPFAA-PQAMQLLALARVRPDAAEVAAN 291

Query: 304 RRSRSAKLRAGMRT 317
            R+RSA +R   RT
Sbjct: 292 PRARSAIMRVAERT 305


>gi|295098586|emb|CBK87676.1| S-adenosyl-methyltransferase MraW [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 313

 Score =  209 bits (532), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 126/311 (40%), Positives = 189/311 (60%), Gaps = 19/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN  P  + +D TFG GG+SR    ++G+   ++A+DRDP A++  Q 
Sbjct: 7   HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGAEGRLLAIDRDPQAIAVAQ- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           T+ D +  FS+    FS L DYV ++G    +DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 66  TIDDPR--FSIVHGPFSALADYVAERGLTGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G SA++ +  A+  D+  ++   GEE+   RIA AIV+R +  P   T++L
Sbjct: 124 LDMRMDPTRGQSAAEWLQTADEADIAWVIKTFGEERFGKRIARAIVERNRVEPMTRTKEL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + +I       K+   HPATR+FQA+RI+VN+E+EE+   L+S+   L  GG L ++SFH
Sbjct: 184 AEVIAAATPV-KDKHKHPATRTFQAVRIWVNSELEEIELALKSSLDVLAPGGRLSIISFH 242

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306
           SLEDR+VK+F    SR  +V A   M             +++ K  ++P +E+VA N R+
Sbjct: 243 SLEDRIVKRFMREQSRGPQVPAGLPMTEEQLRKLGGRQLRALGK--LMPGEEEVAENPRA 300

Query: 307 RSAKLRAGMRT 317
           RS+ LR   RT
Sbjct: 301 RSSVLRIAERT 311


>gi|283835144|ref|ZP_06354885.1| S-adenosyl-methyltransferase MraW [Citrobacter youngae ATCC 29220]
 gi|291069444|gb|EFE07553.1| S-adenosyl-methyltransferase MraW [Citrobacter youngae ATCC 29220]
          Length = 313

 Score =  209 bits (532), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 126/311 (40%), Positives = 191/311 (61%), Gaps = 19/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN  P  + +D TFG GG+SR    ++G    ++A+DRDP A++  + 
Sbjct: 7   HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           T+ D +  FS+    FS L DYV ++G    +DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 66  TITDPR--FSIVHGPFSALADYVAERGLTGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G SA++ +  A+  D+  ++   GEE+   RIA AIV+R +  P   T++L
Sbjct: 124 LDMRMDPTRGQSAAEWLQTADEADIAWVIKTFGEERFGKRIARAIVERNRIEPMTRTKEL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + +I   +   K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L ++SFH
Sbjct: 184 AEVIAAAMPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSIISFH 242

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306
           SLEDR+VK+F    SR  +V A   M  +          +++ K  ++P +E+VA N R+
Sbjct: 243 SLEDRIVKRFMREQSRGPQVPAGIPMTEAQIKKLGGRELRALGK--MMPGEEEVAENPRA 300

Query: 307 RSAKLRAGMRT 317
           RS+ LR   RT
Sbjct: 301 RSSVLRIAERT 311


>gi|283783869|ref|YP_003363734.1| S-adenosyl-L-methionine-dependent methyltransferase [Citrobacter
           rodentium ICC168]
 gi|282947323|emb|CBG86868.1| S-adenosyl-L-methionine-dependent methyltransferase [Citrobacter
           rodentium ICC168]
          Length = 313

 Score =  209 bits (532), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 127/311 (40%), Positives = 189/311 (60%), Gaps = 19/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN  P  + +D TFG GG+SR    ++G    ++A+DRDP A++  Q 
Sbjct: 7   HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAQ- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           T+ D +  FS+    FS L +YV ++     +DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 66  TINDPR--FSIIHGPFSALAEYVAERNLTGRIDGILLDLGVSSPQLDDAERGFSFMRDGP 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   T++L
Sbjct: 124 LDMRMDPTRGQSAAEWLQSAEEADIAWVLKTFGEERFAKRIARAIVERNREQPMTRTKEL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L ++SFH
Sbjct: 184 AEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSIISFH 242

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIP---SNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           SLEDR+VK+F    SR  KV A   M     S       +++ K  ++P +++VA N R+
Sbjct: 243 SLEDRIVKRFMREQSRGPKVPAGIPMTEEQLSKLGGRELRALGK--LMPGEKEVAENPRA 300

Query: 307 RSAKLRAGMRT 317
           RS+ LR   RT
Sbjct: 301 RSSVLRIAERT 311


>gi|320179644|gb|EFW54593.1| rRNA small subunit methyltransferase H [Shigella boydii ATCC 9905]
          Length = 313

 Score =  209 bits (532), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 126/311 (40%), Positives = 189/311 (60%), Gaps = 19/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN  PG + +D TFG GG+SR    ++G    ++A+DRDP A++  + 
Sbjct: 7   HTTVLLDEAVNGLNIRPGGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           T+ D +  FS+    FS L +YV ++     +DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 66  TIDDPR--FSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   T++L
Sbjct: 124 LDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKEL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L ++SFH
Sbjct: 184 AEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISFH 242

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306
           SLEDR+VK+F    SR  +V A   M             +++ K  ++P +E+VA N R+
Sbjct: 243 SLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGK--LMPGEEEVAENPRA 300

Query: 307 RSAKLRAGMRT 317
           RS+ LR   RT
Sbjct: 301 RSSVLRIAERT 311


>gi|261823024|ref|YP_003261130.1| S-adenosyl-methyltransferase MraW [Pectobacterium wasabiae WPP163]
 gi|261607037|gb|ACX89523.1| S-adenosyl-methyltransferase MraW [Pectobacterium wasabiae WPP163]
          Length = 314

 Score =  209 bits (532), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 125/309 (40%), Positives = 188/309 (60%), Gaps = 16/309 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN   G   +D TFG GG+SR    ++G    ++A+DRDP A+   + 
Sbjct: 7   HTSVLLDEAVNGLNIRSGGTYIDGTFGRGGHSRLILSQLGPEGRLLAIDRDPQAIEAAK- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            + D +  FS+    FS + DYV ++G    +DGV+ DLGVSS Q+D  +RGFSF + GP
Sbjct: 66  AIDDPR--FSIIHGPFSAMADYVAERGLTGQIDGVLLDLGVSSPQLDDPERGFSFMRDGP 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G+SA++ + +A   D+  +L   GEE+ A RIA AIV+R ++ P   T++L
Sbjct: 124 LDMRMDPTRGLSAAEWLMKAEADDIVWVLKTFGEERFAKRIARAIVERNRTEPMTRTKEL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI       + ++ HPATRSFQA+RI++N+E+EE+ + L  A   L   G L V+SFH
Sbjct: 184 AELIAAASPVREKHK-HPATRSFQAIRIYINSELEEIERALEGALSVLAPQGRLSVISFH 242

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITK--KVVVPTQEDVAFNRRSR 307
           SLEDR+VK+F    SR  +V A   +  +       Q++    K ++P++E+VA N R+R
Sbjct: 243 SLEDRIVKRFIRHQSRGPQVPAGLPLTEAQLRSQGGQTLKPVGKKLMPSEEEVAENPRAR 302

Query: 308 SAKLRAGMR 316
           S+ LR   R
Sbjct: 303 SSVLRFAER 311


>gi|237729380|ref|ZP_04559861.1| S-adenosyl-methyltransferase MraW [Citrobacter sp. 30_2]
 gi|226909109|gb|EEH95027.1| S-adenosyl-methyltransferase MraW [Citrobacter sp. 30_2]
          Length = 313

 Score =  209 bits (532), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 126/311 (40%), Positives = 191/311 (61%), Gaps = 19/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN  P  + +D TFG GG+SR    ++G    ++A+DRDP A++  + 
Sbjct: 7   HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           T+ D +  FS+    FS L DYV ++G    +DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 66  TITDPR--FSIVHGPFSALADYVAERGLTGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G SA++ +  A+  D+  ++   GEE+   RIA AIV+R +  P   T++L
Sbjct: 124 LDMRMDPTRGQSAAEWLQTADEADIAWVIKTFGEERFGKRIARAIVERNRIEPMTRTKEL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + +I   +   K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L ++SFH
Sbjct: 184 AEVIAAAMPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSIISFH 242

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306
           SLEDR+VK+F    SR  +V A   M  +          +++ K  ++P +E+VA N R+
Sbjct: 243 SLEDRIVKRFMREQSRGPQVPAGIPMTEAQIKKLGGRELRALGK--MMPGEEEVAENPRA 300

Query: 307 RSAKLRAGMRT 317
           RS+ LR   RT
Sbjct: 301 RSSVLRIAERT 311


>gi|291530304|emb|CBK95889.1| S-adenosyl-methyltransferase MraW [Eubacterium siraeum 70/3]
          Length = 308

 Score =  209 bits (532), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 117/299 (39%), Positives = 175/299 (58%), Gaps = 8/299 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77
           H+PVLL + I  L+  P  + +D T G  G+S    K      +I  DRDP AV   +E 
Sbjct: 7   HIPVLLSETIESLDIKPDGIYVDCTTGFAGHSSEIAKRLTTGRLIGFDRDPDAVKAAEEK 66

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++DY    +L    FS   + + + GV   DGV+ DLGVSS Q+D  +RGFS+ +  PLD
Sbjct: 67  LKDY--PHTLINRKFSTFDESLDEIGVGKVDGVLMDLGVSSYQLDTAERGFSYHEDAPLD 124

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRMS SG+SA DVVN+ + + L +IL   GEEK A  I   I+K R++AP +TT +L+ +
Sbjct: 125 MRMSKSGLSAYDVVNEYSKEQLEKILFEYGEEKFAHGIVSGILKARETAPIKTTLELAEI 184

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           +++ V        +P  ++FQA+RI VN E++EL +G+  A + L AGG L +++FHS+E
Sbjct: 185 VKRNVPLKVRKEKNPCKKTFQAIRIEVNGELDELKKGMSEAFERLSAGGRLAIITFHSIE 244

Query: 255 DRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           DR+VK  F    +G        +         +++ +K V  ++E++  N RSRSAKLR
Sbjct: 245 DRIVKNTFREYCTGCTCPPDFPVCVCGKKPRGRTVYRKTVTASEEELEVNNRSRSAKLR 303


>gi|113971906|ref|YP_735699.1| S-adenosyl-methyltransferase MraW [Shewanella sp. MR-4]
 gi|122943466|sp|Q0HE75|RSMH_SHESM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|113886590|gb|ABI40642.1| S-adenosyl-methyltransferase MraW [Shewanella sp. MR-4]
          Length = 313

 Score =  209 bits (531), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 121/308 (39%), Positives = 179/308 (58%), Gaps = 15/308 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQE 76
           H+ VLLE+ +  LN     + +D TFG GG+SR    ++G N  +IA+DRDP A+   ++
Sbjct: 7   HLSVLLEETVGGLNIKDDGIYIDGTFGRGGHSRQVLQRLGENGRLIAIDRDPQAIEAAKQ 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              D +  F +    F QL DYV + G    +DGV+ DLGVSS Q+D  +RGFSF + GP
Sbjct: 67  FADDPR--FQIVHGGFGQLADYVEELGLVGKIDGVLLDLGVSSPQLDDAERGFSFLRDGP 124

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G +A+  + +A ++D+  +    GEEK A  IA  I   R   PF  T+DL
Sbjct: 125 LDMRMDNSQGETAAQWLARAEIEDMAWVFKTYGEEKNARHIARCIAADRDKTPFLRTKDL 184

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI +     + N+ HPATR FQA+RI++N+E++++ Q L  A   L   G L ++SFH
Sbjct: 185 ADLIARITKNKERNK-HPATRVFQAIRIYINSELDQIDQALEGALTVLAPQGRLSIISFH 243

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP---SNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SLEDR+VK+F   R  +  +V H +P      + +       K ++P+ E++  N R+RS
Sbjct: 244 SLEDRIVKRFI-RRHSQGESVPHGLPITEDQINKSRKLRAIGKAIMPSDEEIERNARARS 302

Query: 309 AKLRAGMR 316
           + LR   R
Sbjct: 303 SVLRIAER 310


>gi|296101245|ref|YP_003611391.1| hypothetical protein ECL_00879 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295055704|gb|ADF60442.1| hypothetical protein ECL_00879 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 313

 Score =  209 bits (531), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 126/311 (40%), Positives = 189/311 (60%), Gaps = 19/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN  P  + +D TFG GG+SR    ++G+   ++A+DRDP A++  Q 
Sbjct: 7   HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGAEGRLLAIDRDPQAIAVAQ- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           T+ D +  FS+    FS L DYV ++G    +DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 66  TIDDPR--FSIVHGPFSALADYVAERGLTGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G SA++ +  A+  D+  ++   GEE+   RIA AIV+R +  P   T++L
Sbjct: 124 LDMRMDPTRGQSAAEWLQTADEADIAWVIKTFGEERFGKRIARAIVERNRIEPMTRTKEL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + +I       K+   HPATR+FQA+RI+VN+E+EE+   L+S+   L  GG L ++SFH
Sbjct: 184 AEVIAAATPV-KDKHKHPATRTFQAVRIWVNSELEEIELALKSSLDVLAPGGRLSIISFH 242

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306
           SLEDR+VK+F    SR  +V A   M             +++ K  ++P +E+VA N R+
Sbjct: 243 SLEDRIVKRFMREQSRGPQVPAGLPMTEEQLRKLGGRQLRALGK--LMPGEEEVAENPRA 300

Query: 307 RSAKLRAGMRT 317
           RS+ LR   RT
Sbjct: 301 RSSVLRIAERT 311


>gi|16763510|ref|NP_459125.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|167550685|ref|ZP_02344442.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|167989993|ref|ZP_02571093.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168230399|ref|ZP_02655457.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168234884|ref|ZP_02659942.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168243465|ref|ZP_02668397.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168262195|ref|ZP_02684168.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168820886|ref|ZP_02832886.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194449989|ref|YP_002044090.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194469862|ref|ZP_03075846.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194735661|ref|YP_002113138.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197248687|ref|YP_002145106.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|198243393|ref|YP_002214072.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|200386674|ref|ZP_03213286.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205351459|ref|YP_002225260.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207855634|ref|YP_002242285.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224581963|ref|YP_002635761.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|238911177|ref|ZP_04655014.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|20139016|sp|Q8ZRU8|RSMH_SALTY RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262826349|sp|B5F7V6|RSMH_SALA4 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262826360|sp|B5FI64|RSMH_SALDC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262826371|sp|B5R2L6|RSMH_SALEP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262826385|sp|B5RH56|RSMH_SALG2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262826391|sp|B4TJ79|RSMH_SALHS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262826413|sp|C0Q5H8|RSMH_SALPC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262826460|sp|B4TXH0|RSMH_SALSV RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|16418619|gb|AAL19084.1| putative S-adenosyl methionine adenyltransferase [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|194408293|gb|ACF68512.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194456226|gb|EDX45065.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194711163|gb|ACF90384.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197212390|gb|ACH49787.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197292032|gb|EDY31382.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|197937909|gb|ACH75242.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199603772|gb|EDZ02317.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205271240|emb|CAR36028.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205324445|gb|EDZ12284.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205331448|gb|EDZ18212.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205335013|gb|EDZ21777.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205337535|gb|EDZ24299.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205342387|gb|EDZ29151.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205348778|gb|EDZ35409.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206707437|emb|CAR31710.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|224466490|gb|ACN44320.1| S-adenosyl-methyltransferase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|261245353|emb|CBG23142.1| S-adenosyl-methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267991798|gb|ACY86683.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301156748|emb|CBW16223.1| S-adenosyl-methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312911089|dbj|BAJ35063.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321222306|gb|EFX47378.1| rRNA small subunit methyltransferase H [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|323128440|gb|ADX15870.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|326621816|gb|EGE28161.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
 gi|326626486|gb|EGE32829.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
 gi|332987073|gb|AEF06056.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 313

 Score =  209 bits (531), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 126/311 (40%), Positives = 189/311 (60%), Gaps = 19/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN  P  + +D TFG GG+SR    ++G    ++A+DRDP A++  Q 
Sbjct: 7   HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAQ- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           T+ D +  FS+    FS L DYV ++     +DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 66  TINDPR--FSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   T++L
Sbjct: 124 LDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIARAIVERNREQPMTRTKEL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L ++SFH
Sbjct: 184 AEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSIISFH 242

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306
           SLEDR+VK+F    SR  +V A   M  +          +++ K  ++P +++VA N R+
Sbjct: 243 SLEDRIVKRFMREQSRGPQVPAGLPMTEAQLKKLGGRELRALGK--LMPGEKEVAENPRA 300

Query: 307 RSAKLRAGMRT 317
           RS+ LR   RT
Sbjct: 301 RSSVLRIAERT 311


>gi|322713140|gb|EFZ04711.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 312

 Score =  209 bits (531), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 126/311 (40%), Positives = 189/311 (60%), Gaps = 19/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN  P  + +D TFG GG+SR    ++G    ++A+DRDP A++  Q 
Sbjct: 6   HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAQ- 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           T+ D +  FS+    FS L DYV ++     +DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 65  TINDPR--FSIIHGPFSALADYVAEREFTGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 122

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   T++L
Sbjct: 123 LDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIARAIVERNREQPMTRTKEL 182

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L ++SFH
Sbjct: 183 AEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSIISFH 241

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306
           SLEDR+VK+F    SR  +V A   M  +          +++ K  ++P +++VA N R+
Sbjct: 242 SLEDRIVKRFMREQSRGPQVPAGLPMTEAQLKKLGGRELRALGK--LMPGEKEVAENPRA 299

Query: 307 RSAKLRAGMRT 317
           RS+ LR   RT
Sbjct: 300 RSSVLRIAERT 310


>gi|117922183|ref|YP_871375.1| S-adenosyl-methyltransferase MraW [Shewanella sp. ANA-3]
 gi|262826555|sp|A0L1Q0|RSMH_SHESA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|117614515|gb|ABK49969.1| S-adenosyl-methyltransferase MraW [Shewanella sp. ANA-3]
          Length = 313

 Score =  208 bits (530), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 121/308 (39%), Positives = 179/308 (58%), Gaps = 15/308 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQE 76
           H+ VLLE+ +  LN     + +D TFG GG+SR    ++G N  +IA+DRDP A+   ++
Sbjct: 7   HLSVLLEETVGGLNIKDDGIYIDGTFGRGGHSRQVLQRLGENGRLIAIDRDPQAIEAAKQ 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              D +  F +    F QL DYV + G    +DGV+ DLGVSS Q+D  +RGFSF + GP
Sbjct: 67  FADDPR--FQIVHGGFGQLADYVEELGLVGKIDGVLLDLGVSSPQLDDAERGFSFLRDGP 124

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G +A+  + +A ++D+  +    GEEK A  IA  I   R   PF  T+DL
Sbjct: 125 LDMRMDNSQGETAAQWLARAEIEDMAWVFKTYGEEKNARHIARCIAADRDKTPFLRTKDL 184

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI +     + N+ HPATR FQA+RI++N+E++++ Q L  A   L   G L ++SFH
Sbjct: 185 ADLIARITKNKERNK-HPATRVFQAIRIYINSELDQIDQALEGALTILAPQGRLSIISFH 243

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP---SNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SLEDR+VK+F   R  +  +V H +P      + +       K ++P+ E++  N R+RS
Sbjct: 244 SLEDRIVKRFI-RRHSQGESVPHGLPITEDQINKSRKLRAIGKAIMPSDEEIERNARARS 302

Query: 309 AKLRAGMR 316
           + LR   R
Sbjct: 303 SVLRIAER 310


>gi|322834428|ref|YP_004214455.1| S-adenosyl-methyltransferase MraW [Rahnella sp. Y9602]
 gi|321169629|gb|ADW75328.1| S-adenosyl-methyltransferase MraW [Rahnella sp. Y9602]
          Length = 313

 Score =  208 bits (530), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 130/312 (41%), Positives = 190/312 (60%), Gaps = 19/312 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN     + +D TFG GG+SR    ++G +  ++A+DRDP A+    E
Sbjct: 7   HTSVLLDEAVNGLNIRQDGIYIDGTFGRGGHSRLILSQLGPDGRLLAIDRDPQAIKAA-E 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           ++ D +  FS+    FS L DYV D+G    +DGV+ DLGVSS Q+D  +RGFSF + GP
Sbjct: 66  SIDDPR--FSIVHGPFSDLADYVRDRGLEGKIDGVLLDLGVSSPQLDDPERGFSFMRDGP 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G SA++ + +A  +D+  +L   GEE+ A RIA AIV+R +  P   T++L
Sbjct: 124 LDMRMDPTRGYSATEWLMKAEAEDIAWVLKTFGEERFAKRIARAIVERNRELPMTRTKEL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI       + ++ HPATRSFQA+RI++N+E+EE+ + L  A + L   G L V+SFH
Sbjct: 184 ADLIANASPVREKHK-HPATRSFQAIRIYINSELEEIERALDGALEILAPEGRLSVISFH 242

Query: 252 SLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNRRS 306
           SLEDR+VK+F    SR  +V A   M  + A  A     + K V   +P++ +VA N R+
Sbjct: 243 SLEDRIVKRFIRQHSRGAQVPAGIPM--TEAQIAELGGRSLKSVGKMMPSEAEVAENPRA 300

Query: 307 RSAKLRAGMRTV 318
           RS+ LR   RT 
Sbjct: 301 RSSVLRFAERTT 312


>gi|62178687|ref|YP_215104.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|68565397|sp|Q57TD8|RSMH_SALCH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|62126320|gb|AAX64023.1| putative S-adenosyl methionine adenyltransferase [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
          Length = 312

 Score =  208 bits (530), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 126/311 (40%), Positives = 189/311 (60%), Gaps = 19/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN  P  + +D TFG GG+SR    ++G    ++A+DRDP A++  Q 
Sbjct: 6   HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAQ- 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           T+ D +  FS+    FS L DYV ++     +DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 65  TINDPR--FSIIHGPFSALADYVAEREFTGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 122

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   T++L
Sbjct: 123 LDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIARAIVERNREQPMTRTKEL 182

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L ++SFH
Sbjct: 183 AEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSIISFH 241

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306
           SLEDR+VK+F    SR  +V A   M  +          +++ K  ++P +++VA N R+
Sbjct: 242 SLEDRIVKRFMREQSRGPQVPAGLPMTEAQRKKLGGRELRALGK--LMPGEKEVAENPRA 299

Query: 307 RSAKLRAGMRT 317
           RS+ LR   RT
Sbjct: 300 RSSVLRIAERT 310


>gi|161612464|ref|YP_001586429.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|204927221|ref|ZP_03218423.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|262826399|sp|A9MZL1|RSMH_SALPB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|161361828|gb|ABX65596.1| hypothetical protein SPAB_00154 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|204323886|gb|EDZ09081.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|322615941|gb|EFY12858.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322620725|gb|EFY17585.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322623923|gb|EFY20760.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322627371|gb|EFY24162.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322630678|gb|EFY27442.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322638102|gb|EFY34803.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322640588|gb|EFY37239.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322647729|gb|EFY44214.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322648078|gb|EFY44545.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322656890|gb|EFY53176.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322657400|gb|EFY53672.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322663719|gb|EFY59919.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322666552|gb|EFY62730.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322672289|gb|EFY68401.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322676399|gb|EFY72470.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322679508|gb|EFY75553.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322686163|gb|EFY82147.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323195007|gb|EFZ80193.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323200084|gb|EFZ85171.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323201095|gb|EFZ86164.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323209492|gb|EFZ94425.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323212256|gb|EFZ97080.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323216561|gb|EGA01287.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323225810|gb|EGA10030.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323228648|gb|EGA12777.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323236738|gb|EGA20814.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323239761|gb|EGA23808.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323242191|gb|EGA26220.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323249385|gb|EGA33301.1| 16S rRNA m(4)C1402 methyltranserfase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323252282|gb|EGA36133.1| 16S rRNA m(4)C1402 methyltranserfase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323256628|gb|EGA40358.1| 16S rRNA m(4)C1402 methyltranserfase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323262997|gb|EGA46547.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323265482|gb|EGA48978.1| 16S rRNA m(4)C1402 methyltranserfase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323271730|gb|EGA55148.1| 16S rRNA m(4)C1402 methyltranserfase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 313

 Score =  208 bits (530), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 125/311 (40%), Positives = 189/311 (60%), Gaps = 19/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN  P  + +D TFG GG+SR    ++G    ++A+DRDP A++  Q 
Sbjct: 7   HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAQ- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           T+ D +  FS+    FS L DYV ++     +DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 66  TINDPR--FSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   T++L
Sbjct: 124 LDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIARAIVERNREQPMTRTKEL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L ++SFH
Sbjct: 184 AEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSIISFH 242

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306
           SLEDR+VK+F    SR  ++ A   M  +          +++ K  ++P +++VA N R+
Sbjct: 243 SLEDRIVKRFMREQSRGPQIPAGLPMTEAQLKKLGGRELRALGK--LMPGEKEVAENPRA 300

Query: 307 RSAKLRAGMRT 317
           RS+ LR   RT
Sbjct: 301 RSSVLRIAERT 311


>gi|325294232|ref|YP_004280746.1| ribosomal RNA small subunit methyltransferase H [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325064680|gb|ADY72687.1| Ribosomal RNA small subunit methyltransferase H [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 296

 Score =  208 bits (530), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 118/308 (38%), Positives = 182/308 (59%), Gaps = 26/308 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77
           H PVLL++ I LL     ++ +DAT G GG++ +  +    + VIA+DRD  A+    + 
Sbjct: 7   HPPVLLKESIELLKAKDARIFVDATLGGGGHTEAILEANPENRVIAIDRDEEAIERAMKR 66

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +  + ++ S++ A FSQ+ + +  +G   V+GV+FDLGVS   +  G+RGF+  +  PLD
Sbjct: 67  LERFGDRISIYHANFSQIGEVLEAEGIKEVNGVLFDLGVSHFHLR-GNRGFTVWEEQPLD 125

Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM     ++A DVVN+ + K+L  I+   GEEK A +IA  IV+RR+  P +TT +L+ 
Sbjct: 126 MRMDRRQKLTARDVVNKLSEKELADIIFKYGEEKFARKIAREIVRRRKIKPIETTLELAK 185

Query: 194 LIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           ++++ +        + HPA ++FQA+RIFVN E +E+ +G+  A   +   G ++V++FH
Sbjct: 186 IVEEVIPKKLWAGRKKHPAIKTFQAIRIFVNREFQEIEEGIPEAANHVACSGRIVVITFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDRLVK  F +  G                 F+ ITKK V PT+E++  N  SRSAKL
Sbjct: 246 SLEDRLVKNIFRNLEG-----------------FKVITKKPVEPTEEEIKKNPASRSAKL 288

Query: 312 RAGMRTVE 319
           RA  R  E
Sbjct: 289 RAIERVCE 296


>gi|24375712|ref|NP_719755.1| S-adenosyl-methyltransferase MraW [Shewanella oneidensis MR-1]
 gi|30173050|sp|Q8E9P0|RSMH_SHEON RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|24350646|gb|AAN57199.1|AE015855_10 conserved hypothetical protein TIGR00006 [Shewanella oneidensis
           MR-1]
          Length = 313

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 121/308 (39%), Positives = 178/308 (57%), Gaps = 15/308 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQE 76
           H+ VLLE+ +  LN     + +D TFG GG+SR    ++G    +IA+DRDP A+   ++
Sbjct: 7   HLSVLLEETVGGLNIKDDGIYIDGTFGRGGHSRQVLQRLGEKGRLIAIDRDPQAIEAAKQ 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              D +  F +    F QL DYV D G    +DGV+ DLGVSS Q+D  +RGFSF + GP
Sbjct: 67  FADDPR--FQIVHGGFGQLADYVEDLGLVGKIDGVLLDLGVSSPQLDDAERGFSFLRDGP 124

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G +A+  + +A ++D+  +    GEEK A  IA  I   R   PF  T+DL
Sbjct: 125 LDMRMDNSQGETAAQWLARAEIEDMAWVFKTYGEEKNARHIARCIAADRDKTPFLRTKDL 184

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI +     + N+ HPATR FQA+RI++N+E++++ Q L  A   L   G L ++SFH
Sbjct: 185 ADLIARITKNKERNK-HPATRVFQAIRIYINSELDQIDQALEGALTVLAPQGRLSIISFH 243

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP---SNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SLEDR+VK+F   R  +  +V H +P      + +       K ++P+ E++  N R+RS
Sbjct: 244 SLEDRIVKRFI-RRHSQGESVPHGLPITEDQINKSRKLRAIGKAIMPSDEEIERNARARS 302

Query: 309 AKLRAGMR 316
           + LR   R
Sbjct: 303 SVLRIAER 310


>gi|291544487|emb|CBL17596.1| S-adenosyl-methyltransferase MraW [Ruminococcus sp. 18P13]
          Length = 307

 Score =  208 bits (529), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 128/309 (41%), Positives = 175/309 (56%), Gaps = 13/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H+ VL E+ I  L   P  + +D T G  G++    K+   G  +IALDRDP AV    +
Sbjct: 5   HISVLPEETIEGLGVKPDGIYVDGTVGGAGHALRIAKLLTDGGKLIALDRDPDAVKTADK 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  Y     + Q+ FSQ++  +   G   VDGV+ DLGVSS Q+D G RGFS+    PL
Sbjct: 65  RLAQYPA--VVVQSNFSQIRQVLDSLGISLVDGVLLDLGVSSHQLDTGSRGFSYHVDAPL 122

Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           DMRMS +G+SA D+VN A+ ++L RIL   GEEK A RI   IV+ RQ  P +TT  L+ 
Sbjct: 123 DMRMSQTGVSARDLVNTASPEELVRILFEYGEEKFARRIVAEIVEARQKEPIETTLQLAE 182

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           LI+  V        +P  ++FQA+RI VN E++ L  GL +A   LK GG L V++FHSL
Sbjct: 183 LIKAGVPAKARREKNPCKKTFQAIRIAVNGELDHLTSGLDAAFACLKPGGRLAVITFHSL 242

Query: 254 EDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           EDRLVK+ FA    G +      +    H    + + +K +    E++  N RSRSAKL 
Sbjct: 243 EDRLVKQKFAGWCKGCICPPDFPVCVCGHTPQGRLVNRKPIEAKPEELEENNRSRSAKL- 301

Query: 313 AGMRTVERS 321
              R +ERS
Sbjct: 302 ---RIIERS 307


>gi|167751501|ref|ZP_02423628.1| hypothetical protein EUBSIR_02502 [Eubacterium siraeum DSM 15702]
 gi|167655309|gb|EDR99438.1| hypothetical protein EUBSIR_02502 [Eubacterium siraeum DSM 15702]
          Length = 308

 Score =  208 bits (529), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 117/299 (39%), Positives = 175/299 (58%), Gaps = 8/299 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77
           H+PVLL + I  L+  P  + +D T G  G+S    K      +I  DRDP AV   +E 
Sbjct: 7   HIPVLLSETIESLDIKPDGIYVDCTTGFAGHSSEIAKRLTTGRLIGFDRDPDAVKAAEEK 66

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++DY    +L    FS   + + + GV   DGV+ DLGVSS Q+D  +RGFS+ +  PLD
Sbjct: 67  LKDY--PHTLINRKFSTFDESLDEIGVGKVDGVLMDLGVSSYQLDTAERGFSYHEDAPLD 124

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRMS SG+SA DVVN+ + + L +IL   GEEK A  I   I+K R++AP +TT +L+ +
Sbjct: 125 MRMSKSGLSAYDVVNEYSKEQLEKILFEYGEEKFAHGIVSGILKARETAPIKTTLELAEI 184

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           +++ V        +P  ++FQA+RI VN E++EL +G+  A + L  GG L +++FHS+E
Sbjct: 185 VKRNVPLKVRKEKNPCKKTFQAIRIEVNGELDELKKGMSEAFERLSQGGRLAIITFHSIE 244

Query: 255 DRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           DR+VK  F    +G        +         +++ +K V  ++E++A N RSRSAKLR
Sbjct: 245 DRIVKNTFREYCTGCTCPPDFPVCVCGKKPRGRTVYRKPVTASEEELAVNNRSRSAKLR 303


>gi|320084363|emb|CBY94156.1| putative S-adenosyl methionine adenyltransferase [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
          Length = 346

 Score =  208 bits (529), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 126/311 (40%), Positives = 189/311 (60%), Gaps = 19/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN  P  + +D TFG GG+SR    ++G    ++A+DRDP A++  Q 
Sbjct: 40  HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAQ- 98

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           T+ D +  FS+    FS L DYV ++     +DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 99  TINDPR--FSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 156

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   T++L
Sbjct: 157 LDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIARAIVERNREQPMTRTKEL 216

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L ++SFH
Sbjct: 217 AEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSIISFH 275

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306
           SLEDR+VK+F    SR  +V A   M  +          +++ K  ++P +++VA N R+
Sbjct: 276 SLEDRIVKRFMREQSRGPQVPAGLPMTEAQLKKLGGRELRALGK--LMPGEKEVAENPRA 333

Query: 307 RSAKLRAGMRT 317
           RS+ LR   RT
Sbjct: 334 RSSVLRIAERT 344


>gi|225019362|ref|ZP_03708554.1| hypothetical protein CLOSTMETH_03315 [Clostridium methylpentosum
           DSM 5476]
 gi|224947993|gb|EEG29202.1| hypothetical protein CLOSTMETH_03315 [Clostridium methylpentosum
           DSM 5476]
          Length = 307

 Score =  208 bits (529), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 119/300 (39%), Positives = 177/300 (59%), Gaps = 9/300 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77
           H  VLLE+ +  LN  P  + +D T G  G+SR   K      + + DRDP A++   E 
Sbjct: 5   HTSVLLEECLEGLNIRPDGIYVDGTTGGAGHSREIAKRLTTGRLYSFDRDPDAIAVASER 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +  Y     L  A FS +   +  +GV   DGV+ DLGVSS Q+D  +RGFS+   G LD
Sbjct: 65  LAQYPCS-ELVHANFSTMDAELAKRGVNQVDGVLLDLGVSSFQLDTAERGFSYLNDGILD 123

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRMS SG+SA ++VN    ++L RI+   GEEK    IA  IV++R+  P +TT+ LS +
Sbjct: 124 MRMSKSGLSAREMVNTYPAEELARIIRDYGEEKYYYSIAKNIVRQREVQPIETTRQLSEI 183

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           +  ++        +P+ R+FQA+RI VN E++ L+QGL +A   L +GG L+V++FHSLE
Sbjct: 184 VNSSMPAKARREKNPSKRTFQAIRIAVNEELDSLSQGLENAFSVLSSGGRLVVITFHSLE 243

Query: 255 DRLVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           DR+VK+F A      +      +   N  P   + + KK ++P+++++A NRRS+SAKLR
Sbjct: 244 DRIVKQFNAKMCQGCICPPDFPICVCNNRPKA-RLVNKKPILPSEQELAHNRRSQSAKLR 302


>gi|157147494|ref|YP_001454813.1| S-adenosyl-methyltransferase MraW [Citrobacter koseri ATCC BAA-895]
 gi|263446032|sp|A8ALL4|RSMH_CITK8 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|157084699|gb|ABV14377.1| hypothetical protein CKO_03293 [Citrobacter koseri ATCC BAA-895]
          Length = 314

 Score =  208 bits (529), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 126/311 (40%), Positives = 187/311 (60%), Gaps = 19/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN  P  + +D TFG GG+SR    ++G    ++A+DRDP A++  Q 
Sbjct: 8   HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSRLGEEGRLLAIDRDPQAIAEAQ- 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            + D +  FS+    FS L DYV ++     +DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 67  AINDPR--FSIIHGPFSALADYVSERELIGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 124

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   T++L
Sbjct: 125 LDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIARAIVERNREQPMTRTKEL 184

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L ++SFH
Sbjct: 185 AEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSIISFH 243

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306
           SLEDR+VK+F    SR  +V A   M             +++ K  ++P +E+VA N R+
Sbjct: 244 SLEDRIVKRFMREQSRGPQVPAGLPMTEEQLKKLGGRELRALGK--LMPGEEEVAENPRA 301

Query: 307 RSAKLRAGMRT 317
           RS+ LR   RT
Sbjct: 302 RSSVLRIAERT 312


>gi|116052453|ref|YP_792766.1| S-adenosyl-methyltransferase MraW [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|122257540|sp|Q02H20|RSMH_PSEAB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|115587674|gb|ABJ13689.1| putative methyltransferase [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 313

 Score =  207 bits (528), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 124/305 (40%), Positives = 186/305 (60%), Gaps = 16/305 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQE 76
           H+ VLLE+ ++ L P      LD TFG GG+SR+  +    G  ++  D+DP A+  G+ 
Sbjct: 7   HITVLLEEAVSALAPREDGCYLDGTFGRGGHSRALLEKLGTGGRLLGFDKDPQAIQTGK- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            +     +F + Q +F++L D V  +G    VDGV+ DLGVSS Q+D  +RGFSF   GP
Sbjct: 66  ALAAEDGRFVIVQRSFAELGDEVRARGLEGRVDGVLLDLGVSSPQLDDPERGFSFLNDGP 125

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+   GISA++ +  A  +++ R+  + GEE+ A R+A AIV+RRQ  PF+ T DL
Sbjct: 126 LDMRMNPGQGISAAEFIANATEEEIARVFKVYGEERFAKRMARAIVQRRQERPFERTADL 185

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + +I       +  + +PATR+FQ LRI VNNE+ +L +GL +A ++L  GG L+V+SFH
Sbjct: 186 AEVITVANPAWEKGK-NPATRAFQGLRIHVNNELGDLERGLDAALESLAVGGRLVVISFH 244

Query: 252 SLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVP---TQEDVAFNRRSR 307
           SLEDR+VK F    + G+   +   +P  +   VF+   K +  P   ++E++  N RSR
Sbjct: 245 SLEDRIVKLFMRKHAKGEADNLPRDLPIRSK--VFEPRLKLLGKPQYASEEELKANPRSR 302

Query: 308 SAKLR 312
           SA +R
Sbjct: 303 SAVMR 307


>gi|212213353|ref|YP_002304289.1| S-adenosyl-methyltransferase MraW [Coxiella burnetii CbuG_Q212]
 gi|263447408|sp|B6J2R7|RSMH_COXB2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|212011763|gb|ACJ19144.1| S-adenosyl-methyltransferase [Coxiella burnetii CbuG_Q212]
          Length = 307

 Score =  207 bits (528), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 123/307 (40%), Positives = 184/307 (59%), Gaps = 23/307 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQE 76
           H PVL ++V+  L   P  + +D TFG GG+S     ++G N  ++A+D+DP AV+   +
Sbjct: 4   HKPVLFDEVMEGLAIRPDGIYVDGTFGRGGHSFGILQRLGPNGRLMAMDKDPDAVAVENK 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            + +   + S+   TF+ LQ  V D+G    V+G++ D+GVSS Q++   RGFSF K GP
Sbjct: 64  ALFE-DARLSIVHETFANLQKAVRDRGWEGKVNGILLDIGVSSPQLEDAKRGFSFSKDGP 122

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+    + A+  +NQA ++D+ R+L   GEE+ A RIA AIV  R+  P   TQ+L
Sbjct: 123 LDMRMNPKQSMDAASWINQAAMEDIRRVLWNYGEERFAKRIAQAIVNAREEKPITRTQEL 182

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           S ++ K  Y  +  + HPATR+FQA+RIF+N E++EL + L    + L  GG L V+SFH
Sbjct: 183 SDIVIKA-YPQREIKKHPATRTFQAIRIFINRELDELRECLPQCLETLAVGGRLCVISFH 241

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKK------VVVPTQEDVAFNRR 305
           SLEDRLVK+F    S      R  +P    P + + I  +      ++ PT+ ++  N R
Sbjct: 242 SLEDRLVKRFIQKES------RDHLPREI-PILAKDIKHRLKPLGSLIRPTEAEIKKNPR 294

Query: 306 SRSAKLR 312
           +RSA+LR
Sbjct: 295 ARSARLR 301


>gi|292490616|ref|YP_003526055.1| S-adenosyl-methyltransferase MraW [Nitrosococcus halophilus Nc4]
 gi|291579211|gb|ADE13668.1| S-adenosyl-methyltransferase MraW [Nitrosococcus halophilus Nc4]
          Length = 317

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 125/308 (40%), Positives = 188/308 (61%), Gaps = 12/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H PVLL +VI  L      + +DATFG GG++++     S+   ++ +D+DP A++ G+ 
Sbjct: 12  HQPVLLREVIQALAIRRDGLYVDATFGRGGHAQAILDALSSEGRLLGVDKDPEAIAAGR- 70

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            +     +FS+ QA+  +L   V ++G    V+GV+FDLGVSS Q++   RGFSF + GP
Sbjct: 71  ILAQQDRRFSIVQASIGELARVVAEQGWLKRVNGVLFDLGVSSPQLENAKRGFSFLQDGP 130

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+ + G SA++ +  A  K++  +L   GEE+   RIA AIV+ R+  P   T+ L
Sbjct: 131 LDMRMNPAVGQSAAEWLASATEKEIAAVLKTYGEERFCRRIARAIVQAREINPLTRTKQL 190

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++ K     +  R HPATRSFQA+RIF+NNE+EEL   L  A   L   G L+V+SFH
Sbjct: 191 AEVVAKANPSWEPGR-HPATRSFQAIRIFINNELEELRAALEQAVTVLAVKGRLVVISFH 249

Query: 252 SLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK+FF  +S G+ +     +  +   A  Q +  K++ PT E+V+ N R+RSA+
Sbjct: 250 SLEDRMVKRFFRQKSRGEDLPPDLPVMQDHFQASLQ-VLGKLIWPTPEEVSRNPRARSAR 308

Query: 311 LRAGMRTV 318
           LR   + V
Sbjct: 309 LRVAEKPV 316


>gi|218698505|ref|YP_002406134.1| S-adenosyl-methyltransferase MraW [Escherichia coli IAI39]
 gi|263446431|sp|B7NHI8|RSMH_ECO7I RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|218368491|emb|CAR16226.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Escherichia coli IAI39]
          Length = 313

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 127/312 (40%), Positives = 188/312 (60%), Gaps = 21/312 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR----SFCKMGSNVIALDRDPFAVSCGQ 75
           H  VLL++ +  LN  P  + +D TFG GG+SR     F + G  ++A+DRDP A++  +
Sbjct: 7   HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQFGEEG-RLLAIDRDPQAIAVAK 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            T+ D +  FS+    FS L DYV ++     +DG++ DLGVSS Q+D  +RGFSF + G
Sbjct: 66  -TIDDPR--FSIIHGPFSALGDYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDG 122

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   T++
Sbjct: 123 PLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKE 182

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L ++SF
Sbjct: 183 LAEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISF 241

Query: 251 HSLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRR 305
           HSLEDR+VK+F    SR  +V A   M             +++ K  ++P +E+VA N R
Sbjct: 242 HSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGK--LMPGEEEVAENPR 299

Query: 306 SRSAKLRAGMRT 317
           +RS+ LR   RT
Sbjct: 300 ARSSVLRIAERT 311


>gi|302533959|ref|ZP_07286301.1| S-adenosyl-methyltransferase MraW [Streptomyces sp. C]
 gi|302442854|gb|EFL14670.1| S-adenosyl-methyltransferase MraW [Streptomyces sp. C]
          Length = 319

 Score =  207 bits (527), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 121/311 (38%), Positives = 184/311 (59%), Gaps = 12/311 (3%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74
           HVPV+L++ + LL PA   PG V++D T G GG+S +       + +I LDRD  A+   
Sbjct: 7   HVPVMLQRCLDLLAPALERPGAVVVDCTLGLGGHSEALLTRFPEARLIGLDRDKEALRLS 66

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            E +  + ++ +L  A ++ L + + + G   V G++FDLGVSSMQ+D  DRGF++ +  
Sbjct: 67  GERLAPFGDRATLVHAIYADLAEVLDNLGLPAVQGILFDLGVSSMQLDEADRGFAYAQDA 126

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM   +G+SA++V+N     +L RIL   GEEKQA RI  AIV+ R+  PF  +  
Sbjct: 127 PLDMRMDQTTGVSAAEVLNTYAPGELVRILRQYGEEKQAKRIVSAIVREREKEPFSNSAR 186

Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  LI+  +   +K    +PA R+FQALRI VN E+  L + + +A   +  GG + V+S
Sbjct: 187 LVELIRDALPQAAKRTGGNPAKRTFQALRIEVNGELSGLERAIPAAVDRIAVGGRIAVLS 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           +HSLEDRLVK+ FA+ +         ++P    P   + +T+   +PT+E++A NRR+  
Sbjct: 247 YHSLEDRLVKQVFAAGATSTAPPGLPVVPEKYQPK-LKLLTRGAELPTEEEIAENRRAAP 305

Query: 309 AKLRAGMRTVE 319
           A+ R   R  E
Sbjct: 306 ARFRGVERIRE 316


>gi|239931801|ref|ZP_04688754.1| S-adenosylmethionine-dependent methyltransferase [Streptomyces
           ghanaensis ATCC 14672]
          Length = 309

 Score =  207 bits (527), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 123/307 (40%), Positives = 183/307 (59%), Gaps = 12/307 (3%)

Query: 24  LLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETM 78
           +L++ + LL PA   PG V++D T G GG+S +  +    + ++ALDRD  A+    E +
Sbjct: 1   MLQRCLDLLAPALERPGAVVVDCTLGLGGHSEALLRRFPEARLVALDRDKEALRLSGERL 60

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
             + E+ +L  A + +L D +   GV    GV+FDLGVSSMQ+D  DRGF++ +  PLDM
Sbjct: 61  APFGERATLVHAVYDELPDVLARLGVPRVQGVLFDLGVSSMQLDEADRGFAYAQDAPLDM 120

Query: 136 RMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM   +G+SA++V+N     +L RIL   GEEKQA RI  AIV+ R+  PF  +  L  L
Sbjct: 121 RMDQTAGVSAAEVLNTYPPGELVRILRAYGEEKQAKRIVAAIVREREKEPFTRSARLVEL 180

Query: 195 IQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           I+  +   +K    +PA R+FQALRI VN E+  L + + +A KAL   G + V+S+HSL
Sbjct: 181 IRDALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVKALDVDGRIAVLSYHSL 240

Query: 254 EDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           EDRLVK+ FA+ +         ++P    P   + +T+   +PT+E++A NRR+  A+LR
Sbjct: 241 EDRLVKQVFAAGAATTAPPGLPVVPERYQPR-LKLLTRGAELPTEEEIAENRRAAPARLR 299

Query: 313 AGMRTVE 319
              R  E
Sbjct: 300 GAQRIRE 306


>gi|188532894|ref|YP_001906691.1| S-adenosyl-methyltransferase MraW [Erwinia tasmaniensis Et1/99]
 gi|263447020|sp|B2VD83|RSMH_ERWT9 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|188027936|emb|CAO95793.1| S-adenosyl-methyltransferase MraW [Erwinia tasmaniensis Et1/99]
          Length = 313

 Score =  207 bits (527), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 125/318 (39%), Positives = 189/318 (59%), Gaps = 21/318 (6%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAV 71
           H    H  VLL++ +  LN     + +D TFG GG+SR    ++G +  + A+DRDP A+
Sbjct: 2   HDTFKHTTVLLDEAVNGLNIKSDGIYIDGTFGRGGHSRLILSQLGEHGRLYAIDRDPQAI 61

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSF 127
           +   E       +F++    FS L +Y  ++G    +DG++ DLGVSS Q+D  +RGFSF
Sbjct: 62  AAAAEIT---DPRFTIIHGPFSALAEYAEERGLKGKIDGILLDLGVSSPQLDDAERGFSF 118

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
            + GPLDMRM  + G SA++ + +A   D+  +L   GEE+ A RIA AIV+R +  P  
Sbjct: 119 MRDGPLDMRMDPTRGQSAAEWLLKAEESDIAFVLKTFGEERFAKRIARAIVERNREQPMT 178

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
            T++L+ +I       K+   HPATRSFQA+RI+VN+E+EE+ Q L+ A  AL AGG L 
Sbjct: 179 RTKELADVIYAATPV-KDKFKHPATRSFQAIRIWVNSELEEIEQALKGALSALTAGGRLS 237

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIP------SNAHPAVFQSITKKVVVPTQEDV 300
           ++SFHSLEDR+VK+F   +S +   + H +P      S+      +++ K  ++P + +V
Sbjct: 238 IISFHSLEDRIVKRFMREQS-RGPQIPHGLPMTEAQLSSLGGRQLKALGK--MMPGESEV 294

Query: 301 AFNRRSRSAKLRAGMRTV 318
           A N R+RS+ LR   RT 
Sbjct: 295 ADNPRARSSVLRIAERTA 312


>gi|301026110|ref|ZP_07189585.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 69-1]
 gi|300395681|gb|EFJ79219.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 69-1]
          Length = 313

 Score =  207 bits (527), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 126/311 (40%), Positives = 188/311 (60%), Gaps = 19/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN  P  + +D TFG GG+SR    ++G    ++A+DRDP A+S  + 
Sbjct: 7   HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAISVAK- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           T+ D +  FS+    FS L +YV ++     +DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 66  TIDDPR--FSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   T++L
Sbjct: 124 LDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKEL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L ++SFH
Sbjct: 184 AEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISFH 242

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306
           SLEDR+VK+F    SR  +V A   M             +++ K  ++P +E+VA N R+
Sbjct: 243 SLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGK--LMPGEEEVAENPRA 300

Query: 307 RSAKLRAGMRT 317
           RS+ LR   RT
Sbjct: 301 RSSVLRIAERT 311


>gi|56459539|ref|YP_154820.1| S-adenosyl-methyltransferase MraW [Idiomarina loihiensis L2TR]
 gi|68565448|sp|Q5R0L7|RSMH_IDILO RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|56178549|gb|AAV81271.1| Predicted S-adenosylmethionine-dependent methyltransferase
           [Idiomarina loihiensis L2TR]
          Length = 315

 Score =  207 bits (527), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 127/307 (41%), Positives = 182/307 (59%), Gaps = 13/307 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQE 76
           HV VLLE+ I  L   P    +DATFG GG++R+   ++G +  VIALD+DP A++    
Sbjct: 8   HVSVLLEESIEALATDPQGTYIDATFGRGGHTRALLNQLGDDARVIALDQDPEAIAAAAA 67

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              D +  F +    FS LQ  + D    + V G++FDLGVSS Q+D  +RGFSF + GP
Sbjct: 68  FADDPR--FQIIHTPFSNLQQVLDDLQLNRQVTGILFDLGVSSPQLDDAERGFSFMRDGP 125

Query: 133 LDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM + SG +A++ +N+A   D++ +L   GEE+ A RIA AIV  R+  PF  T+ L
Sbjct: 126 LDMRMNTTSGETAAEWLNRAEKDDISWVLKEYGEERFARRIASAIVMDREKKPFTRTKQL 185

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + +I + V   K    HPATR+FQA+RI +N E+E++ Q L ++   LK  G L+V+SFH
Sbjct: 186 AEMIAR-VSPVKEKHKHPATRTFQAIRIHINRELEQIEQALEASLSGLKEDGRLVVISFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK--KVVVPTQEDVAFNRRSRSA 309
           SLEDRLVK+F    S        +  + A     +++ K  K + P + +V  N RSRS+
Sbjct: 245 SLEDRLVKRFIRKHSEGKQLPPGLPVTEAERNKDKALEKVGKAIKPGKAEVQLNPRSRSS 304

Query: 310 KLRAGMR 316
            LR   R
Sbjct: 305 VLRIARR 311


>gi|329940950|ref|ZP_08290230.1| SAM-dependent methyltransferase [Streptomyces griseoaurantiacus
           M045]
 gi|329300244|gb|EGG44142.1| SAM-dependent methyltransferase [Streptomyces griseoaurantiacus
           M045]
          Length = 310

 Score =  207 bits (526), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 123/308 (39%), Positives = 183/308 (59%), Gaps = 12/308 (3%)

Query: 23  VLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           ++L + + LL PA   PG V++D T G GG+S +       V  +ALDRD  A+    E 
Sbjct: 1   MMLHRCLDLLAPALERPGAVVVDCTLGLGGHSEALLARFPEVRLVALDRDKEALRLSAER 60

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +  Y E+ +L  A + +L + +   G   V GV+FDLGVSSMQ+D  DRGF++ +  PLD
Sbjct: 61  LAPYGERATLVHAVYDELPEVLDRLGLARVQGVLFDLGVSSMQLDEADRGFAYAQDAPLD 120

Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM  S G SA++V+N     +L RIL   GEEKQA RI  A+V+ R+  PF T+  L  
Sbjct: 121 MRMDQSTGTSAAEVLNTYPPGELVRILRAYGEEKQAKRIVSAVVREREREPFTTSARLVE 180

Query: 194 LIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +I+  +   +K    +PA R+FQALRI VN E+  L + + +A +AL  GG + V+++HS
Sbjct: 181 VIRDALPQAAKRTGGNPAKRTFQALRIEVNGELTVLERAIPAAVRALDVGGRIAVLAYHS 240

Query: 253 LEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDRLVK+ FA+ +         ++P    P   + +T+   +PT+E++A NRR+  A+L
Sbjct: 241 LEDRLVKQVFAAGAAGTAPPGLPVVPERYQPR-LKLLTRGAELPTEEEIAENRRAAPARL 299

Query: 312 RAGMRTVE 319
           R  +R  E
Sbjct: 300 RGALRIRE 307


>gi|292616071|ref|XP_689063.3| PREDICTED: probable S-adenosyl-L-methionine-dependent
           methyltransferase METT5D1-like isoform 2 [Danio rerio]
 gi|292616073|ref|XP_002662882.1| PREDICTED: probable S-adenosyl-L-methionine-dependent
           methyltransferase METT5D1-like [Danio rerio]
          Length = 402

 Score =  207 bits (526), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 126/335 (37%), Positives = 182/335 (54%), Gaps = 38/335 (11%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77
           H PV++++V+  LN  PG+++LD TFGAGG+S++  +   G  V+A DRDP A    Q+ 
Sbjct: 67  HTPVMVKEVLQFLNIKPGQIVLDLTFGAGGHSKAILQSVPGVTVVAADRDPTAFRMAQQL 126

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKG-----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +Y+ +       FS+L + +P  G     VD  + D G SSMQ+D  +RGFS  K GP
Sbjct: 127 AEEYQGKVKPVLGRFSELNNLLPALGLGPGTVDAALLDAGCSSMQMDSAERGFSLSKDGP 186

Query: 133 LDMRMSCSGIS----ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           LDMRM          A+DVVN  + + L  +L   GEE+   +IA AI + R   P   T
Sbjct: 187 LDMRMDGDRYPDMPCAADVVNALDQQALASVLAAYGEERHTRKIAAAIAQARSVYPIGRT 246

Query: 189 QDLSSLI----QKTVYFSKNNRI----HPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
             L+S++      +  +++ +R+    H AT++FQALRIFVN+E+ EL  GLR A+  L+
Sbjct: 247 LQLASIVAGAFPASALYARRDRLQRPSHVATKTFQALRIFVNDELNELHAGLRVAQTLLR 306

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP-SNAHPA---------------- 283
             G L V++FHSLEDRL K+F           R +   + A PA                
Sbjct: 307 PKGRLCVLTFHSLEDRLTKRFLRGEDLAAPPRRSLRQHARARPAGQEEEFEEEEEGDEGG 366

Query: 284 --VFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
             V     KKV+ P++E+V  N R+RSAKLR  +R
Sbjct: 367 NSVHWVSLKKVIKPSEEEVQENPRARSAKLRTAVR 401


>gi|91791714|ref|YP_561365.1| S-adenosyl-methyltransferase MraW [Shewanella denitrificans OS217]
 gi|123061331|sp|Q12SD4|RSMH_SHEDO RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|91713716|gb|ABE53642.1| methyltransferase [Shewanella denitrificans OS217]
          Length = 313

 Score =  207 bits (526), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 120/308 (38%), Positives = 180/308 (58%), Gaps = 15/308 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H+ VLL++ +  LN  P  + +D TFG GG+SR     +G N  +IA+DRDP A+   ++
Sbjct: 7   HLSVLLKETVDGLNIQPDGIYIDGTFGRGGHSRHVLSHLGPNGRLIAIDRDPQAIEAAKQ 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              D +  F +    F QL DYV + G    +DGV+ DLGVSS Q+D  +RGFSF + GP
Sbjct: 67  FADDPR--FQIVHGGFGQLADYVAELGLVGKIDGVLLDLGVSSPQLDDAERGFSFLRDGP 124

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G +A+  + +A ++D+  +    GEEK +  IA  I   R+  PF  T+DL
Sbjct: 125 LDMRMDNSQGQTAAQWIARAEIEDMAWVFKTYGEEKNSRHIARCIAADREKTPFLRTKDL 184

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI +     + N+ HPATR FQA+RI++N+E+E++ Q L  A   L   G + ++SFH
Sbjct: 185 ADLIARITKNKERNK-HPATRVFQAIRIYINSELEQIDQALEGAVNVLAPHGRMSIISFH 243

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP---SNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SLEDR+VK+F   R  +  +V H +P   +  + +       K + P++ +V  N R+RS
Sbjct: 244 SLEDRMVKRFM-RRHSQGESVPHGLPITEAEINKSKKLKTLGKAMKPSEIEVEQNPRARS 302

Query: 309 AKLRAGMR 316
           + LR   R
Sbjct: 303 SVLRVAER 310


>gi|117924071|ref|YP_864688.1| S-adenosyl-methyltransferase MraW [Magnetococcus sp. MC-1]
 gi|263456390|sp|A0L5N9|RSMH_MAGSM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|117607827|gb|ABK43282.1| S-adenosyl-methyltransferase MraW [Magnetococcus sp. MC-1]
          Length = 313

 Score =  207 bits (526), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 125/309 (40%), Positives = 175/309 (56%), Gaps = 14/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQE 76
           H  VLL++ +A L P  G   LD TFG GG+SR     C     VI LDRD  A++ GQ 
Sbjct: 5   HTTVLLQETVAALAPQRGGCYLDGTFGGGGHSRLLLEQCAPTGRVIGLDRDADAIANGQA 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +     + +L +A F+Q+ + +       +DG + DLGVSS Q+D  +RGFSF +SGPL
Sbjct: 65  LVAQMAGRLTLVKAPFAQVAEVLQQLEIAALDGAMLDLGVSSHQLDTAERGFSFIRSGPL 124

Query: 134 DMRMS--CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           DMRM    +  +A+ ++N  +   L  I    GEE+ A RIA  +VK RQ  PF TT DL
Sbjct: 125 DMRMDGDSTTPTAAALLNTLDADALADIFFHYGEERHARRIARMVVKVRQQHPFTTTTDL 184

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           +  I         +RIHPATR FQ LRI VN E+++L Q L      LK GG L V+SFH
Sbjct: 185 AERIAHMT--PGYSRIHPATRVFQGLRIAVNEELQQLEQALSVLIGLLKPGGHLAVISFH 242

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAH--PAVFQSITKKVVVPTQEDVAFNRRSR 307
           SLEDR+VK+ F  A++  +   +R +  + A    A  + +  K + P++ ++  N R+R
Sbjct: 243 SLEDRIVKRLFRDAAKPPEDPVLRGLPIAQAQRPKATLKLVHNKPLTPSEAEIEQNPRAR 302

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 303 SAKLRVAQK 311


>gi|311086539|gb|ADP66620.1| S-adenosyl-methyltransferase MraW [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
          Length = 302

 Score =  207 bits (526), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 117/285 (41%), Positives = 180/285 (63%), Gaps = 15/285 (5%)

Query: 39  VILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95
           + +D+TFG GG+S    K       + ++DRDP A S G + ++D   +F +    FS+L
Sbjct: 16  IYIDSTFGTGGHSNEILKKLGQSGRLYSIDRDPIAFSIGSK-IKD--SRFHIINENFSKL 72

Query: 96  QDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQ 150
            D+  ++     V+G++FDLGVSS+QID   RGFSF+  GPLDMRM+ + GISAS+ + +
Sbjct: 73  LDFAKNEKIIGKVNGIIFDLGVSSIQIDDYRRGFSFKNDGPLDMRMNPNYGISASEWLFE 132

Query: 151 ANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPA 210
           +NVK+++ +L   GEE+ + +IA+AI +R Q     +T +L+++I+KT+  +KN   HPA
Sbjct: 133 SNVKEISFVLKNFGEERFSRKIAYAIKRRSQIKKITSTLELANIIKKTIP-TKNKFKHPA 191

Query: 211 TRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVM 270
            RSFQA+RI++N E+EE+ + L S  K LK GG + ++SFHSLEDRLVKKF    S K +
Sbjct: 192 RRSFQAIRIYINQELEEIQKALESTLKILKPGGRISIISFHSLEDRLVKKFMIKNSTKAI 251

Query: 271 AVRHMIPSNAHPAVFQSITKKV---VVPTQEDVAFNRRSRSAKLR 312
               M  +        +   K+   ++PTQ ++  N R+RS+ LR
Sbjct: 252 IPYGMPITEEQLNRLTTCKLKIINRILPTQNEINNNPRARSSVLR 296


>gi|168464328|ref|ZP_02698231.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|194443193|ref|YP_002039352.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|262826395|sp|B4SU42|RSMH_SALNS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|194401856|gb|ACF62078.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|195632559|gb|EDX51013.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
          Length = 313

 Score =  207 bits (526), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 125/311 (40%), Positives = 188/311 (60%), Gaps = 19/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN  P  + +D TFG GG+SR    ++G    ++A+DRDP A++  Q 
Sbjct: 7   HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAQ- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            + D +  FS+    FS L DYV ++     +DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 66  AINDPR--FSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   T++L
Sbjct: 124 LDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIARAIVERNREQPMTRTKEL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L ++SFH
Sbjct: 184 AEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSIISFH 242

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306
           SLEDR+VK+F    SR  +V A   M  +          +++ K  ++P +++VA N R+
Sbjct: 243 SLEDRIVKRFMREQSRGPQVPAGLPMTEAQLKKLGGRELRALGK--LMPGEKEVAENPRA 300

Query: 307 RSAKLRAGMRT 317
           RS+ LR   RT
Sbjct: 301 RSSVLRIAERT 311


>gi|56412392|ref|YP_149467.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197361328|ref|YP_002140963.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|68565445|sp|Q5PDH4|RSMH_SALPA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262826422|sp|B5BLG4|RSMH_SALPK RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|56126649|gb|AAV76155.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197092803|emb|CAR58229.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 313

 Score =  206 bits (525), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 125/311 (40%), Positives = 188/311 (60%), Gaps = 19/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN  P  + +D TFG GG+SR    ++G    ++A+DRDP A++  Q 
Sbjct: 7   HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAQ- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            + D +  FS+    FS L DYV ++     +DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 66  AISDPR--FSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   T++L
Sbjct: 124 LDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIARAIVERNREQPMTRTKEL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L ++SFH
Sbjct: 184 AEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSIISFH 242

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306
           SLEDR+VK+F    SR  +V A   M  +          +++ K  ++P +++VA N R+
Sbjct: 243 SLEDRIVKRFMREQSRGPQVPAGLPMTEAQLKKLGGRELRALGK--LMPGEKEVAENPRA 300

Query: 307 RSAKLRAGMRT 317
           RS+ LR   RT
Sbjct: 301 RSSVLRIAERT 311


>gi|126172646|ref|YP_001048795.1| S-adenosyl-methyltransferase MraW [Shewanella baltica OS155]
 gi|152998944|ref|YP_001364625.1| S-adenosyl-methyltransferase MraW [Shewanella baltica OS185]
 gi|160873530|ref|YP_001552846.1| S-adenosyl-methyltransferase MraW [Shewanella baltica OS195]
 gi|217971625|ref|YP_002356376.1| S-adenosyl-methyltransferase MraW [Shewanella baltica OS223]
 gi|304411651|ref|ZP_07393263.1| S-adenosyl-methyltransferase MraW [Shewanella baltica OS183]
 gi|307306297|ref|ZP_07586042.1| S-adenosyl-methyltransferase MraW [Shewanella baltica BA175]
 gi|262826489|sp|B8E4L2|RSMH_SHEB2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262826490|sp|A3CZL3|RSMH_SHEB5 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262826491|sp|A6WIC3|RSMH_SHEB8 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262826492|sp|A9KY21|RSMH_SHEB9 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|125995851|gb|ABN59926.1| S-adenosyl-methyltransferase MraW [Shewanella baltica OS155]
 gi|151363562|gb|ABS06562.1| S-adenosyl-methyltransferase MraW [Shewanella baltica OS185]
 gi|160859052|gb|ABX47586.1| S-adenosyl-methyltransferase MraW [Shewanella baltica OS195]
 gi|217496760|gb|ACK44953.1| S-adenosyl-methyltransferase MraW [Shewanella baltica OS223]
 gi|304349839|gb|EFM14245.1| S-adenosyl-methyltransferase MraW [Shewanella baltica OS183]
 gi|306911170|gb|EFN41597.1| S-adenosyl-methyltransferase MraW [Shewanella baltica BA175]
 gi|315265760|gb|ADT92613.1| S-adenosyl-methyltransferase MraW [Shewanella baltica OS678]
          Length = 313

 Score =  206 bits (525), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 121/308 (39%), Positives = 177/308 (57%), Gaps = 15/308 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76
           H+ VLL + +  LN     + +D TFG GG+SR   + +G N  +IA+DRDP A+   ++
Sbjct: 7   HLSVLLAETVGGLNIKDDGIYIDGTFGRGGHSRQVLQQLGENGRLIAIDRDPQAIEAAKQ 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              D +  F +    F QL DYV + G    +DGV+ DLGVSS Q+D  +RGFSF + GP
Sbjct: 67  FADDPR--FQIVHGGFGQLADYVEELGLVGKIDGVLLDLGVSSPQLDDAERGFSFMRDGP 124

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G +A+  + +A ++D+  +    GEEK A  IA  I   R   PF  T+DL
Sbjct: 125 LDMRMDNSQGQTAAQWLARAEIEDMAWVFKTYGEEKNARHIARCIAADRDKTPFLRTKDL 184

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI +     + N+ HPATR FQA+RI++N+E++++ Q L  A   L   G L V+SFH
Sbjct: 185 ADLIARITKSKERNK-HPATRVFQAIRIYINSELDQIDQALEGAVNVLAPQGRLSVISFH 243

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP---SNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SLEDR+VK+F   R  +  +V H  P      + +       K ++P+ E++  N R+RS
Sbjct: 244 SLEDRIVKRFI-RRHSQGESVPHGFPVTEDQINKSRKLRAVGKAIMPSDEEIERNARARS 302

Query: 309 AKLRAGMR 316
           + LR   R
Sbjct: 303 SVLRIAER 310


>gi|215485248|ref|YP_002327679.1| S-adenosyl-methyltransferase MraW [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312966210|ref|ZP_07780436.1| S-adenosyl-methyltransferase MraW [Escherichia coli 2362-75]
 gi|263447451|sp|B7UID2|RSMH_ECO27 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|215263320|emb|CAS07635.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Escherichia coli O127:H6 str. E2348/69]
 gi|312289453|gb|EFR17347.1| S-adenosyl-methyltransferase MraW [Escherichia coli 2362-75]
          Length = 313

 Score =  206 bits (525), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 125/311 (40%), Positives = 189/311 (60%), Gaps = 19/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN  P  + +D TFG GG+SR    ++G    ++A+DRDP A++  + 
Sbjct: 7   HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           T+ D +  FS+    FS L +YV ++     +DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 66  TIDDPR--FSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   T++L
Sbjct: 124 LDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKEL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L +GG L ++SFH
Sbjct: 184 AEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLASGGRLSIISFH 242

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306
           SLEDR+VK+F    SR  +V A   M             +++ K  ++P +E+VA N R+
Sbjct: 243 SLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGK--LMPGEEEVAENPRA 300

Query: 307 RSAKLRAGMRT 317
           RS+ LR   RT
Sbjct: 301 RSSVLRIAERT 311


>gi|161504759|ref|YP_001571871.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|262826357|sp|A9MQD1|RSMH_SALAR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|160866106|gb|ABX22729.1| hypothetical protein SARI_02882 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 313

 Score =  206 bits (525), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 124/309 (40%), Positives = 186/309 (60%), Gaps = 15/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN  P  + +D TFG GG+SR    ++G    ++A+DRDP A++  Q 
Sbjct: 7   HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAQ- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            + D +  FS+    FS L DYV ++     +DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 66  AINDPR--FSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   T++L
Sbjct: 124 LDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIARAIVERNREQPMTRTKEL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L ++SFH
Sbjct: 184 AEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSIISFH 242

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSI-TKKVVVPTQEDVAFNRRSRS 308
           SLEDR+VK+F    SR  +V A   M  +       + +     ++P +++VA N R+RS
Sbjct: 243 SLEDRIVKRFMREQSRGPQVPAGLPMTEAQLKKLGGRELRVLGKLMPGEKEVAENPRARS 302

Query: 309 AKLRAGMRT 317
           + LR   RT
Sbjct: 303 SVLRIAERT 311


>gi|116670123|ref|YP_831056.1| S-adenosyl-methyltransferase MraW [Arthrobacter sp. FB24]
 gi|263447796|sp|A0JV86|RSMH_ARTS2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|116610232|gb|ABK02956.1| S-adenosyl-methyltransferase MraW [Arthrobacter sp. FB24]
          Length = 332

 Score =  206 bits (525), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 124/311 (39%), Positives = 185/311 (59%), Gaps = 19/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPG----------KVILDATFGAGGYSRSFCKMGSNV--IALDRD 67
           HVPVL ++ I LL  APG           V++DAT G GG+S +  +   ++  I +DRD
Sbjct: 14  HVPVLKDRCINLL--APGIEAARQRGETPVVIDATLGMGGHSEALLQRFPDLHLIGIDRD 71

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRG 124
             A++   E ++ + ++  L  A + ++ D + D GV    GV+ DLGVSS+Q+D  +RG
Sbjct: 72  EEALALAGERLKPFADRTDLVHAVYDEIPDVLRDLGVSEVHGVLMDLGVSSLQLDERERG 131

Query: 125 FSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           F++    PLDMRM  S G +A+DVVN  + +DL RI+   GEEK A RIA+ IV  R++ 
Sbjct: 132 FAYSFDAPLDMRMDTSRGQTAADVVNNYSEEDLVRIIRKWGEEKFAGRIANRIVAAREAK 191

Query: 184 PFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           PF TT +L   I+  V   +     HPA R+FQALRI VN E++ L + + +A  AL  G
Sbjct: 192 PFATTGELVDTIRAVVPAGAAKTGGHPAKRTFQALRIEVNEELDVLERAVPAAVDALAMG 251

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G ++V+S+HSLED++VKK F + S     +   +    H    +++TK   VPT +++A 
Sbjct: 252 GRVVVMSYHSLEDKIVKKVFQTGSKSSAPLGFPVELEEHKPELKTLTKGTEVPTADEIAE 311

Query: 303 NRRSRSAKLRA 313
           N R+ SA+LRA
Sbjct: 312 NPRAASARLRA 322


>gi|296284506|ref|ZP_06862504.1| S-adenosyl-methyltransferase MraW [Citromicrobium bathyomarinum
           JL354]
          Length = 303

 Score =  206 bits (525), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 125/296 (42%), Positives = 180/296 (60%), Gaps = 10/296 (3%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAV--SCGQETMRDYKEQF 85
           ++A L P   ++I+D TFGAGGY+R+    G+ V A DRDP A+  + G   + +   + 
Sbjct: 1   MVAALRPVQDELIVDGTFGAGGYTRALLDAGATVHAFDRDPTALENAQGWPELAETPPRL 60

Query: 86  SLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI 142
            L +  F+ +   + ++G   VDG+V D+GVSSMQ+D  DRGFSF   GPLDMRM     
Sbjct: 61  VLHRRAFADMAAALAEQGIARVDGIVLDIGVSSMQLDQADRGFSFAGDGPLDMRMDPDLP 120

Query: 143 SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS 202
           SA+D +N A+  ++  ++   GEE+Q+ RIA AIV  R   P +TT  L+ L++K     
Sbjct: 121 SAADFLNSADEAEIADVIYQYGEERQSRRIARAIVAAR---PLETTGQLARLVRKATGHK 177

Query: 203 KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF 262
            +++  PATR+FQA+RI VN E+E+L   L +AE+ L  GG L+VVSFHSLEDR+VK+F 
Sbjct: 178 PHDKKDPATRTFQAIRIHVNGELEQLRGALAAAERLLAPGGRLVVVSFHSLEDRIVKRFM 237

Query: 263 ASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
              SG+     RH+  +   PA F    + V    + ++A N R+RSA LRA  RT
Sbjct: 238 RDASGQAGGGSRHLPLAETPPATFDKPLRAVRA-GEAELARNPRARSAILRAATRT 292


>gi|302389508|ref|YP_003825329.1| S-adenosyl-methyltransferase MraW [Thermosediminibacter oceani DSM
           16646]
 gi|302200136|gb|ADL07706.1| S-adenosyl-methyltransferase MraW [Thermosediminibacter oceani DSM
           16646]
          Length = 313

 Score =  206 bits (525), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 127/308 (41%), Positives = 180/308 (58%), Gaps = 20/308 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGG-YSRSFCKMGSN--VIALDRDPFAVSCGQE 76
           H PVLLE+ I LL+P PG V +DAT G GG +S    ++G N  VI +DRD  AV   +E
Sbjct: 5   HKPVLLEETINLLDPKPGGVYVDATLGGGGHFSEILKRVGENGTVIGIDRDEDAVVNARE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                    ++    F  ++  V     +GVDGV+FDLGVSS Q+D   RGFS+ K  PL
Sbjct: 65  RF-SQSPAATIVHDNFKNIKRIVYSLGLEGVDGVIFDLGVSSYQLDEESRGFSYIKDAPL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  +  ++A DVVN+    +L +I+   GEE+ A RIA  I ++R+  P +TT +L 
Sbjct: 124 DMRMDRNQDLTAKDVVNKMTKSELAKIIKEYGEERWADRIAEFICEKRKKKPIETTGELV 183

Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  +   ++    HPA R+FQALRI+VN E+E L+  L+ A   L  GG + V++FH
Sbjct: 184 EIIKAAIPARARRGGPHPAKRTFQALRIYVNGELEILSASLKDAVDILNPGGRICVITFH 243

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS------ITKKVVVPTQEDVAFNRR 305
           SLEDR+VK  F     + +A     P ++     +S      +T K V PTQ+++  N R
Sbjct: 244 SLEDRIVKHTF-----RELAKGCTCPKDSPLCTCKSERALKILTPKPVCPTQDEIDANPR 298

Query: 306 SRSAKLRA 313
           +RSAKLRA
Sbjct: 299 ARSAKLRA 306


>gi|324008349|gb|EGB77568.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 57-2]
          Length = 313

 Score =  206 bits (525), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 125/311 (40%), Positives = 188/311 (60%), Gaps = 19/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN  P  + +D TFG GG+SR    ++G    ++A+DRDP A++  + 
Sbjct: 7   HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           T+ D +  FS+    FS L +YV ++     +DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 66  TIDDRR--FSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   T++L
Sbjct: 124 LDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKEL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L ++SFH
Sbjct: 184 AEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISFH 242

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306
           SLEDR+VK+F    SR  +V A   M             +++ K  ++P +E+VA N R+
Sbjct: 243 SLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGK--LMPGEEEVAENPRA 300

Query: 307 RSAKLRAGMRT 317
           RS+ LR   RT
Sbjct: 301 RSSVLRIAERT 311


>gi|227885013|ref|ZP_04002818.1| S-adenosyl-methyltransferase MraW [Escherichia coli 83972]
 gi|301048472|ref|ZP_07195498.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 185-1]
 gi|227837842|gb|EEJ48308.1| S-adenosyl-methyltransferase MraW [Escherichia coli 83972]
 gi|300299686|gb|EFJ56071.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 185-1]
 gi|307551926|gb|ADN44701.1| S-adenosyl-dependent methyltransferase MraW [Escherichia coli ABU
           83972]
          Length = 313

 Score =  206 bits (525), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 126/311 (40%), Positives = 188/311 (60%), Gaps = 19/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN  P  + +D TFG GG+SR    ++G    ++A+DRDP A++  + 
Sbjct: 7   HFTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           T+ D +  FS+    FS L +YV D+     +DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 66  TIDDPR--FSIIHGPFSALGEYVADRDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   T++L
Sbjct: 124 LDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKEL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L ++SFH
Sbjct: 184 AEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLHVLAPGGRLSIISFH 242

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306
           SLEDR+VK+F    SR  +V A   M             +++ K  ++P +E+VA N R+
Sbjct: 243 SLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGK--LMPGEEEVAENPRA 300

Query: 307 RSAKLRAGMRT 317
           RS+ LR   RT
Sbjct: 301 RSSVLRIAERT 311


>gi|317046889|ref|YP_004114537.1| S-adenosyl-methyltransferase MraW [Pantoea sp. At-9b]
 gi|316948506|gb|ADU67981.1| S-adenosyl-methyltransferase MraW [Pantoea sp. At-9b]
          Length = 313

 Score =  206 bits (525), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 129/309 (41%), Positives = 186/309 (60%), Gaps = 15/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN     + +D TFG GG+SR    ++G+N  ++A+DRDP A++   E
Sbjct: 7   HTTVLLDEAVNALNIREDGIYIDGTFGRGGHSRLILAQLGANGQLLAIDRDPQAIAAAAE 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            ++D +  FS+    FS L +YV ++G    +DGV+ DLGVSS Q+D  +RGFSF + GP
Sbjct: 67  -IKDSR--FSIVHGPFSALAEYVSERGLNGKIDGVLLDLGVSSPQLDDAERGFSFMRDGP 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   T++L
Sbjct: 124 LDMRMDPTRGQSAAEWLLSAEEADIAFVLKTYGEERFAKRIARAIVERNREQPMTRTKEL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + +I       K+   HPATRSFQA+RI++N+E+EE+   L+ A   L  GG L V+SFH
Sbjct: 184 AEVIAAATPV-KDKFKHPATRSFQAIRIWINSELEEIDIALKGALSVLAPGGRLSVISFH 242

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSI-TKKVVVPTQEDVAFNRRSRS 308
           SLEDRLVK+F    SR  +V A   M  +       + + T   +VP   +VA N R+RS
Sbjct: 243 SLEDRLVKRFMRDQSRGPQVPAGIPMTETQLKALGGRELKTLGKMVPGDAEVADNPRARS 302

Query: 309 AKLRAGMRT 317
           + LR   RT
Sbjct: 303 SVLRIAERT 311


>gi|311085963|gb|ADP66045.1| S-adenosyl-methyltransferase MraW [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
          Length = 302

 Score =  206 bits (525), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 116/285 (40%), Positives = 180/285 (63%), Gaps = 15/285 (5%)

Query: 39  VILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95
           + +D+TFG GG+S    K       + ++DRDP A S G + ++D   +F +    FS+L
Sbjct: 16  IYIDSTFGTGGHSNEILKKLGQSGRLYSIDRDPIAFSIGSK-IKD--SRFHIINENFSKL 72

Query: 96  QDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQ 150
            D+  ++     V+G++FDLGVSS+QID   RGFSF+  GPLDMRM+ + GISAS+ + +
Sbjct: 73  LDFAKNEKIIGKVNGIIFDLGVSSIQIDDYRRGFSFKNDGPLDMRMNPNYGISASEWLFE 132

Query: 151 ANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPA 210
           +N+K+++ +L   GEE+ + +IA+AI +R Q     +T +L+++I+KT+  +KN   HPA
Sbjct: 133 SNIKEISFVLKNFGEERFSRKIAYAIKRRSQIKKITSTLELANIIKKTIP-TKNKFKHPA 191

Query: 211 TRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVM 270
            RSFQA+RI++N E+EE+ + L S  K LK GG + ++SFHSLEDRLVKKF    S K +
Sbjct: 192 RRSFQAIRIYINQELEEIQKALESTLKILKPGGRISIISFHSLEDRLVKKFMIKNSTKAI 251

Query: 271 AVRHMIPSNAHPAVFQSITKKV---VVPTQEDVAFNRRSRSAKLR 312
               M  +        +   K+   ++PTQ ++  N R+RS+ LR
Sbjct: 252 IPYGMPITEEQLNRLTTCKLKIINRILPTQNEINNNPRARSSVLR 296


>gi|94676738|ref|YP_588954.1| S-adenosyl-methyltransferase MraW [Baumannia cicadellinicola str.
           Hc (Homalodisca coagulata)]
 gi|263445957|sp|Q1LSW0|RSMH_BAUCH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|94219888|gb|ABF14047.1| S-adenosyl-methyltransferase MraW [Baumannia cicadellinicola str.
           Hc (Homalodisca coagulata)]
          Length = 317

 Score =  206 bits (525), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 122/310 (39%), Positives = 189/310 (60%), Gaps = 24/310 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQE 76
           H+PVLL + +  LN     + +D TFG GG+SR    K+G+   ++A+DRDP A++ G+ 
Sbjct: 8   HIPVLLNEAVTALNIKKDGIYIDGTFGRGGHSRLILSKLGNKGRLLAIDRDPAAIAAGRN 67

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
               +  +F++ Q  FS + DY+ +      +DG++ DLG+SS Q+   DRGFSF+ +G 
Sbjct: 68  I---HDLRFTIVQRPFSTIADYIAELNLIGCIDGILLDLGISSPQLADPDRGFSFRHNGK 124

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + GISA + + QA+V+++T +L   GEE+ A RI+ AI  + +     +T +L
Sbjct: 125 LDMRMDTTCGISAREWLKQASVQEMTWVLQHFGEERFAKRISQAIFHQNRRRLITSTSEL 184

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI   V +S  ++ HPATRSFQA+RI++NNE++E+ Q L SA   L  GG L+V+SFH
Sbjct: 185 AKLITTIVPWSNKHK-HPATRSFQAIRIYINNELKEIEQVLNSALNILAIGGKLVVISFH 243

Query: 252 SLEDRLVKKFFASRS-------GKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAF 302
           SLEDRLVK F    S       G  +  + +  +  N H    +++ K  + P+ +++  
Sbjct: 244 SLEDRLVKYFINKHSKLPLPPTGISLTEKQIADLYKNRH-LTLKNLGK--IRPSIQEIKV 300

Query: 303 NRRSRSAKLR 312
           N R+RSA LR
Sbjct: 301 NPRARSALLR 310


>gi|58038635|ref|YP_190599.1| SAM-dependent methytransferase [Gluconobacter oxydans 621H]
 gi|68565412|sp|Q5FUK3|RSMH_GLUOX RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|58001049|gb|AAW59943.1| SAM-dependent methytransferase [Gluconobacter oxydans 621H]
          Length = 323

 Score =  206 bits (524), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 132/303 (43%), Positives = 173/303 (57%), Gaps = 15/303 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI-ALDRDPFAVSCGQETM 78
           HVPV+L +V+  L+P  G   LD TFG GGY+R+        + A+DRDP A+  G    
Sbjct: 11  HVPVMLHEVLEALSPRAGGRYLDGTFGGGGYARAILNAADCTLDAIDRDPAAIERGNAMA 70

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
                +  + Q TF  ++     +G  DG+V DLGVSS QID  +RGFSF+  GPLDMRM
Sbjct: 71  VQANGRLRMHQGTFGDMEALAGAEGPFDGIVLDLGVSSFQIDQAERGFSFRNDGPLDMRM 130

Query: 138 SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK 197
              G SA+D+VN     +L  IL   GEEK + RIA AIV  R  AP  TT  L+ +I+ 
Sbjct: 131 GSDGPSAADLVNTCKEAELADILYRYGEEKLSRRIARAIVAARAEAPITTTGQLAHIIRC 190

Query: 198 TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRL 257
            V   + N I PATRSFQ LRI VN+E+ EL + L +A + L  GG+ +VV+FHSLEDRL
Sbjct: 191 CVPRDRAN-IDPATRSFQGLRIAVNDELGELERALEAAPRLLAPGGIFVVVTFHSLEDRL 249

Query: 258 VKKFFASRSGKVMAVRHMIPSNAHPA-------VFQSITKKVVVPTQEDVAFNRRSRSAK 310
            K+  A     V+A R   PS   PA        F  +  + +  T E+   N R+RSA+
Sbjct: 250 AKRAMA-----VLAGRTGNPSRYEPAPLRQEAPAFSLLYSRPLSATDEESRENPRARSAR 304

Query: 311 LRA 313
           LRA
Sbjct: 305 LRA 307


>gi|15799766|ref|NP_285778.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 EDL933]
 gi|15829340|ref|NP_308113.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           Sakai]
 gi|16128075|ref|NP_414624.1| 16S rRNA m(4)C1402 methyltranserfase, SAM-dependent [Escherichia
           coli str. K-12 substr. MG1655]
 gi|82542686|ref|YP_406633.1| S-adenosyl-methyltransferase MraW [Shigella boydii Sb227]
 gi|89106965|ref|AP_000745.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Escherichia coli str. K-12 substr. W3110]
 gi|91209146|ref|YP_539132.1| S-adenosyl-methyltransferase MraW [Escherichia coli UTI89]
 gi|110640295|ref|YP_668023.1| S-adenosyl-methyltransferase MraW [Escherichia coli 536]
 gi|157154775|ref|YP_001461252.1| S-adenosyl-methyltransferase MraW [Escherichia coli E24377A]
 gi|157159553|ref|YP_001456871.1| S-adenosyl-methyltransferase MraW [Escherichia coli HS]
 gi|168751408|ref|ZP_02776430.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           EC4113]
 gi|168755690|ref|ZP_02780697.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           EC4401]
 gi|168764039|ref|ZP_02789046.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           EC4501]
 gi|168771306|ref|ZP_02796313.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           EC4486]
 gi|168776926|ref|ZP_02801933.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           EC4196]
 gi|168781967|ref|ZP_02806974.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           EC4076]
 gi|168789609|ref|ZP_02814616.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           EC869]
 gi|168801509|ref|ZP_02826516.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           EC508]
 gi|170021562|ref|YP_001726516.1| S-adenosyl-methyltransferase MraW [Escherichia coli ATCC 8739]
 gi|170079721|ref|YP_001729041.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Escherichia coli str. K-12 substr. DH10B]
 gi|170679711|ref|YP_001742204.1| S-adenosyl-methyltransferase MraW [Escherichia coli SMS-3-5]
 gi|187731396|ref|YP_001878892.1| S-adenosyl-methyltransferase MraW [Shigella boydii CDC 3083-94]
 gi|188494231|ref|ZP_03001501.1| S-adenosyl-methyltransferase MraW [Escherichia coli 53638]
 gi|191167757|ref|ZP_03029564.1| S-adenosyl-methyltransferase MraW [Escherichia coli B7A]
 gi|191174644|ref|ZP_03036126.1| S-adenosyl-methyltransferase MraW [Escherichia coli F11]
 gi|193065897|ref|ZP_03046958.1| S-adenosyl-methyltransferase MraW [Escherichia coli E22]
 gi|193070829|ref|ZP_03051762.1| S-adenosyl-methyltransferase MraW [Escherichia coli E110019]
 gi|194429383|ref|ZP_03061908.1| S-adenosyl-methyltransferase MraW [Escherichia coli B171]
 gi|194439418|ref|ZP_03071495.1| S-adenosyl-methyltransferase MraW [Escherichia coli 101-1]
 gi|195939298|ref|ZP_03084680.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           EC4024]
 gi|208807673|ref|ZP_03250010.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           EC4206]
 gi|208812612|ref|ZP_03253941.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           EC4045]
 gi|208821818|ref|ZP_03262138.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           EC4042]
 gi|209400403|ref|YP_002268690.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           EC4115]
 gi|209917275|ref|YP_002291359.1| S-adenosyl-methyltransferase MraW [Escherichia coli SE11]
 gi|217324681|ref|ZP_03440765.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           TW14588]
 gi|218547539|ref|YP_002381330.1| S-adenosyl-methyltransferase MraW [Escherichia fergusonii ATCC
           35469]
 gi|218552665|ref|YP_002385578.1| S-adenosyl-methyltransferase MraW [Escherichia coli IAI1]
 gi|218557022|ref|YP_002389935.1| S-adenosyl-methyltransferase MraW [Escherichia coli S88]
 gi|218693551|ref|YP_002401218.1| S-adenosyl-methyltransferase MraW [Escherichia coli 55989]
 gi|218703342|ref|YP_002410861.1| S-adenosyl-methyltransferase MraW [Escherichia coli UMN026]
 gi|237704231|ref|ZP_04534712.1| S-adenosyl-methyltransferase MraW [Escherichia sp. 3_2_53FAA]
 gi|238899483|ref|YP_002925279.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Escherichia coli BW2952]
 gi|253774888|ref|YP_003037719.1| S-adenosyl-methyltransferase MraW [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254037497|ref|ZP_04871574.1| S-adenosyl-methyltransferase MraW [Escherichia sp. 1_1_43]
 gi|254160204|ref|YP_003043312.1| S-adenosyl-methyltransferase MraW [Escherichia coli B str. REL606]
 gi|254791219|ref|YP_003076056.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           TW14359]
 gi|256020080|ref|ZP_05433945.1| S-adenosyl-methyltransferase MraW [Shigella sp. D9]
 gi|256025396|ref|ZP_05439261.1| S-adenosyl-methyltransferase MraW [Escherichia sp. 4_1_40B]
 gi|260842318|ref|YP_003220096.1| S-adenosyl-dependent methyltransferase [Escherichia coli O103:H2
           str. 12009]
 gi|260853295|ref|YP_003227186.1| S-adenosyl-dependent methyltransferase [Escherichia coli O26:H11
           str. 11368]
 gi|260866235|ref|YP_003232637.1| S-adenosyl-dependent methyltransferase [Escherichia coli O111:H-
           str. 11128]
 gi|261226839|ref|ZP_05941120.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261255243|ref|ZP_05947776.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291280907|ref|YP_003497725.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Escherichia coli O55:H7 str. CB9615]
 gi|293403154|ref|ZP_06647251.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Escherichia coli FVEC1412]
 gi|293408175|ref|ZP_06652015.1| S-adenosyl-methyltransferase MraW [Escherichia coli B354]
 gi|293417958|ref|ZP_06660580.1| S-adenosyl-methyltransferase MraW [Escherichia coli B185]
 gi|293476742|ref|ZP_06665150.1| S-adenosyl-methyltransferase MraW [Escherichia coli B088]
 gi|297516902|ref|ZP_06935288.1| S-adenosyl-methyltransferase MraW [Escherichia coli OP50]
 gi|298378684|ref|ZP_06988568.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Escherichia coli FVEC1302]
 gi|300816120|ref|ZP_07096343.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 107-1]
 gi|300821913|ref|ZP_07102057.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 119-7]
 gi|300900887|ref|ZP_07119024.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 198-1]
 gi|300905491|ref|ZP_07123255.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 84-1]
 gi|300919637|ref|ZP_07136128.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 115-1]
 gi|300923135|ref|ZP_07139195.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 182-1]
 gi|300931791|ref|ZP_07147091.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 187-1]
 gi|300938477|ref|ZP_07153217.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 21-1]
 gi|300949900|ref|ZP_07163863.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 116-1]
 gi|300955948|ref|ZP_07168281.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 175-1]
 gi|300984504|ref|ZP_07176996.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 200-1]
 gi|301028563|ref|ZP_07191794.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 196-1]
 gi|301303818|ref|ZP_07209938.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 124-1]
 gi|301330140|ref|ZP_07222807.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 78-1]
 gi|301646394|ref|ZP_07246276.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 146-1]
 gi|306815320|ref|ZP_07449469.1| S-adenosyl-methyltransferase MraW [Escherichia coli NC101]
 gi|307136683|ref|ZP_07496039.1| S-adenosyl-methyltransferase MraW [Escherichia coli H736]
 gi|307311467|ref|ZP_07591109.1| S-adenosyl-methyltransferase MraW [Escherichia coli W]
 gi|309796072|ref|ZP_07690484.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 145-7]
 gi|312970176|ref|ZP_07784358.1| S-adenosyl-methyltransferase MraW [Escherichia coli 1827-70]
 gi|331661128|ref|ZP_08362060.1| S-adenosyl-methyltransferase MraW [Escherichia coli TA206]
 gi|331661456|ref|ZP_08362380.1| S-adenosyl-methyltransferase MraW [Escherichia coli TA143]
 gi|331666319|ref|ZP_08367200.1| S-adenosyl-methyltransferase MraW [Escherichia coli TA271]
 gi|331681467|ref|ZP_08382104.1| S-adenosyl-methyltransferase MraW [Escherichia coli H299]
 gi|332281230|ref|ZP_08393643.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Shigella sp. D9]
 gi|42559423|sp|P60391|RSMH_ECO57 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|42560200|sp|P60390|RSMH_ECOLI RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|88909217|sp|Q326F3|RSMH_SHIBS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|122425027|sp|Q1RGB3|RSMH_ECOUT RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|122958600|sp|Q0TLQ7|RSMH_ECOL5 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262826583|sp|B2U287|RSMH_SHIB3 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446391|sp|A7ZHH3|RSMH_ECO24 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446421|sp|B7LFV2|RSMH_ECO55 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446425|sp|B5YZB8|RSMH_ECO5E RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446445|sp|B7M125|RSMH_ECO8A RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446449|sp|C5W331|RSMH_ECOBB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446457|sp|C6UM45|RSMH_ECOBR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446461|sp|C4ZQ04|RSMH_ECOBW RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446465|sp|B1XC59|RSMH_ECODH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446468|sp|A7ZW34|RSMH_ECOHS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446964|sp|B1IR96|RSMH_ECOLC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446972|sp|B7N7V5|RSMH_ECOLU RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446978|sp|B6HZ59|RSMH_ECOSE RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446983|sp|B1LG19|RSMH_ECOSM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263447462|sp|B7MAK5|RSMH_ECO45 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263447500|sp|B7LWH0|RSMH_ESCF3 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263447897|sp|A1A7C7|RSMH_ECOK1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|12512785|gb|AAG54386.1|AE005185_3 putative apolipoprotein [Escherichia coli O157:H7 str. EDL933]
 gi|40850|emb|CAA38859.1| unnamed protein product [Escherichia coli]
 gi|42318|emb|CAA36283.1| unnamed protein product [Escherichia coli str. K-12 substr. W3110]
 gi|1786270|gb|AAC73193.1| 16S rRNA m(4)C1402 methyltranserfase, SAM-dependent [Escherichia
           coli str. K-12 substr. MG1655]
 gi|13359542|dbj|BAB33509.1| putative apolipoprotein [Escherichia coli O157:H7 str. Sakai]
 gi|21321963|dbj|BAB96650.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Escherichia coli str. K12 substr. W3110]
 gi|81244097|gb|ABB64805.1| putative apolipoprotein [Shigella boydii Sb227]
 gi|91070720|gb|ABE05601.1| S-adenosyl-dependent methyltransferase MraW [Escherichia coli
           UTI89]
 gi|110341887|gb|ABG68124.1| S-adenosyl-methyltransferase MraW [Escherichia coli 536]
 gi|157065233|gb|ABV04488.1| S-adenosyl-methyltransferase MraW [Escherichia coli HS]
 gi|157076805|gb|ABV16513.1| S-adenosyl-methyltransferase MraW [Escherichia coli E24377A]
 gi|169756490|gb|ACA79189.1| S-adenosyl-methyltransferase MraW [Escherichia coli ATCC 8739]
 gi|169887556|gb|ACB01263.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Escherichia coli str. K-12 substr. DH10B]
 gi|170517429|gb|ACB15607.1| S-adenosyl-methyltransferase MraW [Escherichia coli SMS-3-5]
 gi|187428388|gb|ACD07662.1| S-adenosyl-methyltransferase MraW [Shigella boydii CDC 3083-94]
 gi|187767771|gb|EDU31615.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           EC4196]
 gi|188014531|gb|EDU52653.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           EC4113]
 gi|188489430|gb|EDU64533.1| S-adenosyl-methyltransferase MraW [Escherichia coli 53638]
 gi|189000502|gb|EDU69488.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           EC4076]
 gi|189356993|gb|EDU75412.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           EC4401]
 gi|189359899|gb|EDU78318.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           EC4486]
 gi|189365898|gb|EDU84314.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           EC4501]
 gi|189370778|gb|EDU89194.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           EC869]
 gi|189376342|gb|EDU94758.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           EC508]
 gi|190902183|gb|EDV61925.1| S-adenosyl-methyltransferase MraW [Escherichia coli B7A]
 gi|190905079|gb|EDV64736.1| S-adenosyl-methyltransferase MraW [Escherichia coli F11]
 gi|192926484|gb|EDV81117.1| S-adenosyl-methyltransferase MraW [Escherichia coli E22]
 gi|192955859|gb|EDV86329.1| S-adenosyl-methyltransferase MraW [Escherichia coli E110019]
 gi|194412603|gb|EDX28900.1| S-adenosyl-methyltransferase MraW [Escherichia coli B171]
 gi|194421677|gb|EDX37687.1| S-adenosyl-methyltransferase MraW [Escherichia coli 101-1]
 gi|208727474|gb|EDZ77075.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           EC4206]
 gi|208733889|gb|EDZ82576.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           EC4045]
 gi|208741941|gb|EDZ89623.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           EC4042]
 gi|209161803|gb|ACI39236.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           EC4115]
 gi|209746626|gb|ACI71620.1| putative apolipoprotein [Escherichia coli]
 gi|209746628|gb|ACI71621.1| putative apolipoprotein [Escherichia coli]
 gi|209746630|gb|ACI71622.1| putative apolipoprotein [Escherichia coli]
 gi|209746632|gb|ACI71623.1| putative apolipoprotein [Escherichia coli]
 gi|209910534|dbj|BAG75608.1| S-adenosyl-methyltransferase [Escherichia coli SE11]
 gi|217320902|gb|EEC29326.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           TW14588]
 gi|218350283|emb|CAU95966.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Escherichia coli 55989]
 gi|218355080|emb|CAQ87687.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Escherichia fergusonii ATCC 35469]
 gi|218359433|emb|CAQ96971.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Escherichia coli IAI1]
 gi|218363791|emb|CAR01451.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Escherichia coli S88]
 gi|218430439|emb|CAR11305.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Escherichia coli UMN026]
 gi|226840603|gb|EEH72605.1| S-adenosyl-methyltransferase MraW [Escherichia sp. 1_1_43]
 gi|226902143|gb|EEH88402.1| S-adenosyl-methyltransferase MraW [Escherichia sp. 3_2_53FAA]
 gi|238863507|gb|ACR65505.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Escherichia coli BW2952]
 gi|242375918|emb|CAQ30599.1| 16S rRNA m[4]C1402 methyltransferase [Escherichia coli BL21(DE3)]
 gi|253325932|gb|ACT30534.1| S-adenosyl-methyltransferase MraW [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253972105|gb|ACT37776.1| S-adenosyl-methyltransferase [Escherichia coli B str. REL606]
 gi|253976314|gb|ACT41984.1| S-adenosyl-methyltransferase [Escherichia coli BL21(DE3)]
 gi|254590619|gb|ACT69980.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Escherichia coli O157:H7 str. TW14359]
 gi|257751944|dbj|BAI23446.1| S-adenosyl-dependent methyltransferase [Escherichia coli O26:H11
           str. 11368]
 gi|257757465|dbj|BAI28962.1| S-adenosyl-dependent methyltransferase [Escherichia coli O103:H2
           str. 12009]
 gi|257762591|dbj|BAI34086.1| S-adenosyl-dependent methyltransferase [Escherichia coli O111:H-
           str. 11128]
 gi|260450711|gb|ACX41133.1| S-adenosyl-methyltransferase MraW [Escherichia coli DH1]
 gi|281177302|dbj|BAI53632.1| S-adenosyl-methyltransferase [Escherichia coli SE15]
 gi|290760780|gb|ADD54741.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Escherichia coli O55:H7 str. CB9615]
 gi|291321195|gb|EFE60637.1| S-adenosyl-methyltransferase MraW [Escherichia coli B088]
 gi|291430069|gb|EFF03083.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Escherichia coli FVEC1412]
 gi|291430676|gb|EFF03674.1| S-adenosyl-methyltransferase MraW [Escherichia coli B185]
 gi|291472426|gb|EFF14908.1| S-adenosyl-methyltransferase MraW [Escherichia coli B354]
 gi|294492092|gb|ADE90848.1| S-adenosyl-methyltransferase MraW [Escherichia coli IHE3034]
 gi|298281018|gb|EFI22519.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Escherichia coli FVEC1302]
 gi|299878407|gb|EFI86618.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 196-1]
 gi|300306673|gb|EFJ61193.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 200-1]
 gi|300317168|gb|EFJ66952.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 175-1]
 gi|300355651|gb|EFJ71521.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 198-1]
 gi|300402641|gb|EFJ86179.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 84-1]
 gi|300413277|gb|EFJ96587.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 115-1]
 gi|300420590|gb|EFK03901.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 182-1]
 gi|300450732|gb|EFK14352.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 116-1]
 gi|300456546|gb|EFK20039.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 21-1]
 gi|300460451|gb|EFK23944.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 187-1]
 gi|300525513|gb|EFK46582.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 119-7]
 gi|300531327|gb|EFK52389.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 107-1]
 gi|300840945|gb|EFK68705.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 124-1]
 gi|300843845|gb|EFK71605.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 78-1]
 gi|301075364|gb|EFK90170.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 146-1]
 gi|305850982|gb|EFM51437.1| S-adenosyl-methyltransferase MraW [Escherichia coli NC101]
 gi|306908446|gb|EFN38944.1| S-adenosyl-methyltransferase MraW [Escherichia coli W]
 gi|307629656|gb|ADN73960.1| S-adenosyl-methyltransferase MraW [Escherichia coli UM146]
 gi|308120314|gb|EFO57576.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 145-7]
 gi|309700293|emb|CBI99581.1| S-adenosyl-L-methionine-dependent methyltransferase [Escherichia
           coli ETEC H10407]
 gi|310337674|gb|EFQ02785.1| S-adenosyl-methyltransferase MraW [Escherichia coli 1827-70]
 gi|315059305|gb|ADT73632.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Escherichia coli W]
 gi|315134776|dbj|BAJ41935.1| S-adenosyl-methyltransferase MraW [Escherichia coli DH1]
 gi|315253156|gb|EFU33124.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 85-1]
 gi|315285172|gb|EFU44617.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 110-3]
 gi|315300017|gb|EFU59255.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 16-3]
 gi|315616139|gb|EFU96758.1| S-adenosyl-methyltransferase MraW [Escherichia coli 3431]
 gi|320172827|gb|EFW48059.1| rRNA small subunit methyltransferase H [Shigella dysenteriae CDC
           74-1112]
 gi|320183631|gb|EFW58474.1| rRNA small subunit methyltransferase H [Shigella flexneri CDC
           796-83]
 gi|320190395|gb|EFW65045.1| rRNA small subunit methyltransferase H [Escherichia coli O157:H7
           str. EC1212]
 gi|320197467|gb|EFW72081.1| rRNA small subunit methyltransferase H [Escherichia coli WV_060327]
 gi|320200399|gb|EFW74985.1| rRNA small subunit methyltransferase H [Escherichia coli EC4100B]
 gi|320642121|gb|EFX11472.1| 16S rRNA m(4)C1402 methyltranserfase [Escherichia coli O157:H7 str.
           G5101]
 gi|320658207|gb|EFX25936.1| 16S rRNA m(4)C1402 methyltranserfase [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320663516|gb|EFX30800.1| 16S rRNA m(4)C1402 methyltranserfase [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320668828|gb|EFX35623.1| 16S rRNA m(4)C1402 methyltranserfase [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323157851|gb|EFZ43954.1| S-adenosyl-methyltransferase MraW [Escherichia coli EPECa14]
 gi|323160120|gb|EFZ46081.1| S-adenosyl-methyltransferase MraW [Escherichia coli E128010]
 gi|323176390|gb|EFZ61982.1| S-adenosyl-methyltransferase MraW [Escherichia coli 1180]
 gi|323181779|gb|EFZ67192.1| S-adenosyl-methyltransferase MraW [Escherichia coli 1357]
 gi|323190236|gb|EFZ75512.1| S-adenosyl-methyltransferase MraW [Escherichia coli RN587/1]
 gi|323380137|gb|ADX52405.1| S-adenosyl-methyltransferase MraW [Escherichia coli KO11]
 gi|323935134|gb|EGB31501.1| S-adenosyl-methyltransferase MraW [Escherichia coli E1520]
 gi|323939878|gb|EGB36078.1| S-adenosyl-methyltransferase MraW [Escherichia coli E482]
 gi|323945711|gb|EGB41759.1| S-adenosyl-methyltransferase MraW [Escherichia coli H120]
 gi|323950922|gb|EGB46799.1| S-adenosyl-methyltransferase MraW [Escherichia coli H252]
 gi|323955280|gb|EGB51053.1| S-adenosyl-methyltransferase MraW [Escherichia coli H263]
 gi|323960028|gb|EGB55674.1| S-adenosyl-methyltransferase MraW [Escherichia coli H489]
 gi|323964822|gb|EGB60289.1| S-adenosyl-methyltransferase MraW [Escherichia coli M863]
 gi|323970754|gb|EGB66008.1| S-adenosyl-methyltransferase MraW [Escherichia coli TA007]
 gi|323975754|gb|EGB70850.1| S-adenosyl-methyltransferase MraW [Escherichia coli TW10509]
 gi|324012284|gb|EGB81503.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 60-1]
 gi|324017757|gb|EGB86976.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 117-3]
 gi|324112505|gb|EGC06482.1| S-adenosyl-methyltransferase MraW [Escherichia fergusonii B253]
 gi|324118432|gb|EGC12326.1| S-adenosyl-methyltransferase MraW [Escherichia coli E1167]
 gi|325496018|gb|EGC93877.1| S-adenosyl-methyltransferase MraW [Escherichia fergusonii ECD227]
 gi|326345198|gb|EGD68941.1| rRNA small subunit methyltransferase H [Escherichia coli O157:H7
           str. 1125]
 gi|326346948|gb|EGD70682.1| rRNA small subunit methyltransferase H [Escherichia coli O157:H7
           str. 1044]
 gi|327255060|gb|EGE66663.1| S-adenosyl-methyltransferase MraW [Escherichia coli STEC_7v]
 gi|330909929|gb|EGH38439.1| rRNA small subunit methyltransferase H [Escherichia coli AA86]
 gi|331052170|gb|EGI24209.1| S-adenosyl-methyltransferase MraW [Escherichia coli TA206]
 gi|331061371|gb|EGI33334.1| S-adenosyl-methyltransferase MraW [Escherichia coli TA143]
 gi|331066530|gb|EGI38407.1| S-adenosyl-methyltransferase MraW [Escherichia coli TA271]
 gi|331081688|gb|EGI52849.1| S-adenosyl-methyltransferase MraW [Escherichia coli H299]
 gi|332095373|gb|EGJ00396.1| S-adenosyl-methyltransferase MraW [Shigella boydii 5216-82]
 gi|332098926|gb|EGJ03877.1| S-adenosyl-methyltransferase MraW [Shigella boydii 3594-74]
 gi|332103582|gb|EGJ06928.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Shigella sp. D9]
 gi|332341414|gb|AEE54748.1| S-adenosyl-methyltransferase MraW [Escherichia coli UMNK88]
 gi|333010578|gb|EGK30011.1| S-adenosyl-methyltransferase MraW [Shigella flexneri VA-6]
 gi|333011470|gb|EGK30884.1| S-adenosyl-methyltransferase MraW [Shigella flexneri K-272]
 gi|333021712|gb|EGK40961.1| S-adenosyl-methyltransferase MraW [Shigella flexneri K-227]
          Length = 313

 Score =  206 bits (524), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 125/311 (40%), Positives = 188/311 (60%), Gaps = 19/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN  P  + +D TFG GG+SR    ++G    ++A+DRDP A++  + 
Sbjct: 7   HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           T+ D +  FS+    FS L +YV ++     +DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 66  TIDDPR--FSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   T++L
Sbjct: 124 LDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKEL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L ++SFH
Sbjct: 184 AEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISFH 242

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306
           SLEDR+VK+F    SR  +V A   M             +++ K  ++P +E+VA N R+
Sbjct: 243 SLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGK--LMPGEEEVAENPRA 300

Query: 307 RSAKLRAGMRT 317
           RS+ LR   RT
Sbjct: 301 RSSVLRIAERT 311


>gi|170768458|ref|ZP_02902911.1| S-adenosyl-methyltransferase MraW [Escherichia albertii TW07627]
 gi|170122562|gb|EDS91493.1| S-adenosyl-methyltransferase MraW [Escherichia albertii TW07627]
          Length = 313

 Score =  206 bits (524), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 126/311 (40%), Positives = 186/311 (59%), Gaps = 19/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN  P  + +D TFG GG+SR      S    ++A+DRDP A++  + 
Sbjct: 7   HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLSEEGRLLAIDRDPQAIAVAK- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           T+ D +  FS+    FS L +YV ++     +DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 66  TIDDPR--FSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   T++L
Sbjct: 124 LDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKEL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L V+SFH
Sbjct: 184 AEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSVISFH 242

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306
           SLEDR+VK+F    SR  +V A   M             +++ K  ++P +E+VA N R+
Sbjct: 243 SLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGK--LMPGEEEVAENPRA 300

Query: 307 RSAKLRAGMRT 317
           RS+ LR   RT
Sbjct: 301 RSSVLRIAERT 311


>gi|326795778|ref|YP_004313598.1| ribosomal RNA small subunit methyltransferase H [Marinomonas
           mediterranea MMB-1]
 gi|326546542|gb|ADZ91762.1| Ribosomal RNA small subunit methyltransferase H [Marinomonas
           mediterranea MMB-1]
          Length = 312

 Score =  206 bits (524), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 118/316 (37%), Positives = 188/316 (59%), Gaps = 13/316 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKM-GSNVIALDR 66
           M+S+ H    +H+ V+L++ + +L        +D TFG GG++R    K+    ++  D+
Sbjct: 1   MTSSEH----EHISVMLDESVEMLVTNESGQYVDGTFGRGGHTRLVLSKLRDGKLLGFDK 56

Query: 67  DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP----DKGVDGVVFDLGVSSMQIDCGD 122
           DP A+  G++ +     +F + Q +F+ + D++P     + +DG++ DLGVSS Q+D  +
Sbjct: 57  DPVAIEFGRK-LEAEDSRFEIVQDSFANMLDHIPAVFGTEKIDGIMMDLGVSSPQLDDAE 115

Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF   GPLDMRM+   G+SA++ +  A  K++  ++   GEE+ + RIA AI ++R 
Sbjct: 116 RGFSFMNDGPLDMRMNPDQGMSAAEWIAVAAEKEIADVMYQYGEERFSRRIAKAICEKRL 175

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            AP  TT  LS ++ +     +  + +PATR+FQ +RI++NNE+ +L +GL  A  +LK 
Sbjct: 176 EAPITTTAQLSKIVAEANPAWEKGK-NPATRAFQGIRIYINNELGDLEKGLEVAADSLKV 234

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           GG L+V+SFHSLEDR+VK+F    S      RH+   NAH  +      K   P++++V 
Sbjct: 235 GGRLVVISFHSLEDRIVKRFMKKMSKGPDLPRHLPIQNAHLDIKFKTVGKATKPSKDEVT 294

Query: 302 FNRRSRSAKLRAGMRT 317
            N RSRSA LR   RT
Sbjct: 295 SNVRSRSAVLRVLERT 310


>gi|284919862|emb|CBG32917.1| S-adenosyl-L-methionine-dependent methyltransferase [Escherichia
           coli 042]
          Length = 312

 Score =  206 bits (524), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 125/311 (40%), Positives = 188/311 (60%), Gaps = 19/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN  P  + +D TFG GG+SR    ++G    ++A+DRDP A++  + 
Sbjct: 6   HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK- 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           T+ D +  FS+    FS L +YV ++     +DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 65  TIDDPR--FSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 122

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   T++L
Sbjct: 123 LDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKEL 182

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L ++SFH
Sbjct: 183 AEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISFH 241

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306
           SLEDR+VK+F    SR  +V A   M             +++ K  ++P +E+VA N R+
Sbjct: 242 SLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGK--LMPGEEEVAENPRA 299

Query: 307 RSAKLRAGMRT 317
           RS+ LR   RT
Sbjct: 300 RSSVLRIAERT 310


>gi|15615138|ref|NP_243441.1| hypothetical protein BH2575 [Bacillus halodurans C-125]
 gi|20139210|sp|Q9K9S0|RSMH_BACHD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|10175196|dbj|BAB06294.1| BH2575 [Bacillus halodurans C-125]
          Length = 310

 Score =  206 bits (524), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 118/304 (38%), Positives = 184/304 (60%), Gaps = 11/304 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
           +HV VL  + +  LN  P  + +D T G  G+S+   K    G ++ A D+D +A+S  +
Sbjct: 3   EHVTVLKNESVIGLNIKPDGIYVDCTLGGAGHSQEIVKQLTGGGHLYAFDQDQYALSHAK 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           ET+  Y+  F+L ++ F  +++ + + GV   DGV+FDLGVSS Q+D  +RGFS+ +  P
Sbjct: 63  ETLSPYRGSFTLIESNFRYMREKLEELGVHHVDGVLFDLGVSSPQLDEDERGFSYHRDAP 122

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+ S  +SA +VVNQ +  +L +I+   GEE+ A +IA  I + R+  P +TT +L
Sbjct: 123 LDMRMNRSQSLSAYEVVNQWDFIELMKIISRYGEERFAKQIARKIEQSREKKPIRTTGEL 182

Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I++ +   ++    HPA R+FQA+RI VN+E+    + L +A       G + V++F
Sbjct: 183 VDIIKEAIPAPARRTGGHPAKRTFQAIRIAVNDELGAFEEALEAAIDLTAPKGRICVITF 242

Query: 251 HSLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+ K+ F  AS+   V     +IP   + A  + ITKK +VPT E++  N R+RS
Sbjct: 243 HSLEDRICKEMFREASKGPDVPPGLPVIPEE-YKATLKLITKKPIVPTAEEIELNNRARS 301

Query: 309 AKLR 312
           AKLR
Sbjct: 302 AKLR 305


>gi|21220572|ref|NP_626351.1| S-adenosyl-methyltransferase MraW [Streptomyces coelicolor A3(2)]
 gi|289772183|ref|ZP_06531561.1| methylase MraW [Streptomyces lividans TK24]
 gi|20139275|sp|Q9S2W4|RSMH_STRCO RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|5689964|emb|CAB52001.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)]
 gi|289702382|gb|EFD69811.1| methylase MraW [Streptomyces lividans TK24]
          Length = 310

 Score =  206 bits (523), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 119/307 (38%), Positives = 182/307 (59%), Gaps = 10/307 (3%)

Query: 23  VLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77
           ++L++ + LL PA   PG V++D T G GG+S +  +    + ++ALDRD  A+    E 
Sbjct: 1   MMLQRCLDLLAPALQEPGAVVVDCTLGLGGHSEALLERFPEARLVALDRDKEALRLSGER 60

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +  Y  + +L  A + +L D +   GV    GV+FDLGVSSMQ+D  DRGF++ +  PLD
Sbjct: 61  LAPYGGRATLVHAVYDELPDVLDRLGVPRVQGVLFDLGVSSMQLDEADRGFAYAQDAPLD 120

Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM  S G+SA++V+N     +L RIL   GEEKQA RI  A+V+ R+  PF  +  L  
Sbjct: 121 MRMDQSTGMSAAEVLNTYPPGELVRILRAYGEEKQAKRIVSAVVREREKEPFTNSARLVE 180

Query: 194 LIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           LI+  +   +K    +PA R+FQALRI VN E+  L + + +A +++  GG + V+S+HS
Sbjct: 181 LIRAALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVESVAVGGRIAVLSYHS 240

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDRLVK+ FA+ +         +    +    + +T+   +PT+E++A NRR+  A+LR
Sbjct: 241 LEDRLVKQVFAAGAANTAPPGLPVVPEQYAPRLKLLTRGAELPTEEEIAENRRAAPARLR 300

Query: 313 AGMRTVE 319
              R  E
Sbjct: 301 GAERIRE 307


>gi|148265993|ref|YP_001232699.1| S-adenosyl-methyltransferase MraW [Geobacter uraniireducens Rf4]
 gi|146399493|gb|ABQ28126.1| S-adenosyl-methyltransferase MraW [Geobacter uraniireducens Rf4]
          Length = 303

 Score =  206 bits (523), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 127/298 (42%), Positives = 176/298 (59%), Gaps = 13/298 (4%)

Query: 27  KVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETMRDYKE 83
           +VI  L P  G + +D T G GG++R   +  +    +I  DRD  A++   E +  Y E
Sbjct: 4   EVIQYLAPRAGGIYVDGTLGGGGHARQILEASAPDGLLIGFDRDREAIAIAAERLAPYGE 63

Query: 84  QFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS 140
           +  L Q  F+ L + + + G+D   G + D+GVSS Q+D   RGFSFQ   PLDMRM  S
Sbjct: 64  RVRLVQRNFACLAETLDEMGIDAIDGFLLDVGVSSHQLDTAARGFSFQHDAPLDMRMDVS 123

Query: 141 -GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199
            G SASD+VN  +  DL RI+   GEE+ A RIA  IVKRR+ +P +TT  L  +I+  V
Sbjct: 124 SGQSASDLVNTLSEADLARIIWDYGEERWAKRIAAFIVKRREESPIETTMQLVDVIKGAV 183

Query: 200 -YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258
              + + R+HPATR+FQALRI VN+E+  L + L +  + LK GG  +V+SFHSLEDR+V
Sbjct: 184 PRGAWDVRLHPATRTFQALRIAVNDELASLEKALAAGVRFLKKGGRGVVISFHSLEDRIV 243

Query: 259 KKFFASRSGKVMAVRHMIP---SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           K  F S +      +  IP       P V + IT K V+  + +V+ N RSRSA+LRA
Sbjct: 244 KTSFRSFAQGCTCPKS-IPRCVCGKLPLV-KVITGKPVMANEAEVSMNPRSRSARLRA 299


>gi|184155045|ref|YP_001843385.1| cell division protein [Lactobacillus fermentum IFO 3956]
 gi|227514829|ref|ZP_03944878.1| S-adenosyl-methyltransferase [Lactobacillus fermentum ATCC 14931]
 gi|260663589|ref|ZP_05864478.1| methylase MraW [Lactobacillus fermentum 28-3-CHN]
 gi|263458139|sp|B2GB73|RSMH_LACF3 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|183226389|dbj|BAG26905.1| cell division protein [Lactobacillus fermentum IFO 3956]
 gi|227086819|gb|EEI22131.1| S-adenosyl-methyltransferase [Lactobacillus fermentum ATCC 14931]
 gi|260551815|gb|EEX24930.1| methylase MraW [Lactobacillus fermentum 28-3-CHN]
          Length = 314

 Score =  206 bits (523), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 125/305 (40%), Positives = 182/305 (59%), Gaps = 12/305 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76
           +HV VLL + +A L   P  V +DAT G GG+S    K     ++ + D+D  A+   Q 
Sbjct: 5   NHVTVLLHEAVAGLAIQPAGVYVDATLGGGGHSGEILKQLTSGHLYSFDQDETAIHYNQA 64

Query: 77  TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +    E+   +L Q  F  L+  + D+GV   DG+V+DLGVSS Q D   RGFS+Q   
Sbjct: 65  NLGPAIEEGKLTLMQTNFRNLKQALADQGVTAIDGIVYDLGVSSPQFDDAKRGFSYQHDA 124

Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+    +SA  VVN+ + ++L RIL   GEEK A +IA AI + RQ  P QTT +
Sbjct: 125 PLDMRMNQDQPLSAYQVVNEWSYQELVRILYRYGEEKFAKQIARAIERARQKQPIQTTME 184

Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L++++++ +   ++ +  HPA +SFQA+RI VN+E+  L   L  A   LK GG + V++
Sbjct: 185 LANIVKEAIPAAARRHGGHPAKKSFQAIRIAVNDELGALEDSLEQALALLKVGGRISVIT 244

Query: 250 FHSLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           F SLEDRLVK  F  A+    +     +IP++A P  F+ I KK V+PT++++  N R+ 
Sbjct: 245 FQSLEDRLVKTMFKEATSLPDLPPGLPVIPADAQPD-FKLINKKPVLPTEDELKVNHRAH 303

Query: 308 SAKLR 312
           SAKLR
Sbjct: 304 SAKLR 308


>gi|209746624|gb|ACI71619.1| putative apolipoprotein [Escherichia coli]
 gi|320647484|gb|EFX16279.1| 16S rRNA m(4)C1402 methyltranserfase [Escherichia coli O157:H- str.
           493-89]
 gi|320652818|gb|EFX21056.1| 16S rRNA m(4)C1402 methyltranserfase [Escherichia coli O157:H- str.
           H 2687]
          Length = 313

 Score =  206 bits (523), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 125/311 (40%), Positives = 188/311 (60%), Gaps = 19/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN  P  + +D TFG GG+SR    ++G    ++A+DRDP A++  + 
Sbjct: 7   HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           T+ D +  FS+    FS L +YV ++     +DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 66  TIDDPR--FSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   T++L
Sbjct: 124 LDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNRKQPMTRTKEL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L ++SFH
Sbjct: 184 AEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISFH 242

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306
           SLEDR+VK+F    SR  +V A   M             +++ K  ++P +E+VA N R+
Sbjct: 243 SLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGK--LMPGEEEVAENPRA 300

Query: 307 RSAKLRAGMRT 317
           RS+ LR   RT
Sbjct: 301 RSSVLRIAERT 311


>gi|221133797|ref|ZP_03560102.1| S-adenosyl-methyltransferase MraW [Glaciecola sp. HTCC2999]
          Length = 310

 Score =  206 bits (523), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 125/305 (40%), Positives = 181/305 (59%), Gaps = 17/305 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76
           H  VLL + I  L   P  + +DATFG GG+S      +G +  +IA DRDP A+   Q+
Sbjct: 6   HTSVLLHECIEGLAIKPDGIYIDATFGRGGHSSYILNALGEHGRLIAFDRDPAAIEAAQK 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG-----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            + D +  F++  + F+Q+ D VP        VDGV+ DLGVSS Q+D   RGFSF + G
Sbjct: 66  FVNDPR--FTIVHSAFAQM-DEVPLTAGLIDQVDGVLMDLGVSSPQLDDSSRGFSFLRDG 122

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  S G+SA   +  A+ +D+ +++   GEEK   RIAHAIV  R   P  +T  
Sbjct: 123 PLDMRMDTSTGVSAEQWLAHADEQDIAQVIKEFGEEKFGKRIAHAIVNTRVHTPINSTLQ 182

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+++I + +   K+   HPATR+FQ +RI++N+E+++L  GL++A K LK  G L  +SF
Sbjct: 183 LAAIIAEAMPV-KDKHKHPATRAFQGIRIYINSELDQLRDGLKAAVKLLKPTGRLAAISF 241

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIP---SNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           HSLEDR+VK+F   +S K   V H +P   +         +  K + P+ E+V+ N RSR
Sbjct: 242 HSLEDRMVKRFMREQS-KGKNVPHNMPILQAEIDADKVLKLIGKAIKPSDEEVSNNPRSR 300

Query: 308 SAKLR 312
           S+ LR
Sbjct: 301 SSVLR 305


>gi|66769818|ref|YP_244580.1| S-adenosyl-methyltransferase MraW [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|81304228|sp|Q4UQW3|RSMH_XANC8 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|66575150|gb|AAY50560.1| cell division protein [Xanthomonas campestris pv. campestris str.
           8004]
          Length = 342

 Score =  206 bits (523), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 134/326 (41%), Positives = 180/326 (55%), Gaps = 15/326 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HVPVL  +V+  L        LD TFG GG++R   +    G  ++ +D+DP AV+  Q 
Sbjct: 8   HVPVLYTQVLEGLQVTENGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDPEAVAVSQH 67

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
           T      + S+   +F++L   V    VDG++ DLGVSS Q+D   RGFSF K GPLDMR
Sbjct: 68  TF-GGDARVSIHPGSFARLVQVVAAATVDGILLDLGVSSPQLDVAGRGFSFGKDGPLDMR 126

Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M   SG SA+  + QA  +++  +L   GEE+Q+ RIA AIV RR   P   T  L+ LI
Sbjct: 127 MDPDSGQSAAGWLAQATDREIADVLWTYGEERQSRRIARAIVARRGEQPLLRTAQLADLI 186

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
             +V    +++ HPATRSFQA+RI +N E+ +L  GL +A  ALK GG L V+SFHSLED
Sbjct: 187 -ASVMPRGDSKTHPATRSFQAIRIHINRELADLEAGLDAALGALKPGGRLAVISFHSLED 245

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           R+VK+F A R  K       +P  A P V   Q ++  +     E +A N R+RSA LR 
Sbjct: 246 RIVKQFMA-RYAKAPPSNRRLP-EAQPFVPTLQLVSGAIKADDSE-LAVNPRARSAVLRV 302

Query: 314 ----GMRTVERSIEDDSFVHLPRLPT 335
               GM   E  +         R PT
Sbjct: 303 AEKLGMENRESGMGKGHGAAASRFPT 328


>gi|237807292|ref|YP_002891732.1| S-adenosyl-methyltransferase MraW [Tolumonas auensis DSM 9187]
 gi|262825943|sp|C4LA17|RSMH_TOLAT RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|237499553|gb|ACQ92146.1| S-adenosyl-methyltransferase MraW [Tolumonas auensis DSM 9187]
          Length = 308

 Score =  206 bits (523), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 122/308 (39%), Positives = 181/308 (58%), Gaps = 14/308 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MG--SNVIALDRDPFAVSCGQ 75
           +H+ VLL++ +  L   P  + +D TFG GG+SR   + +G    + A+DRDP AV+  +
Sbjct: 2   EHITVLLQEAVDGLAIRPDGIYVDGTFGRGGHSRLILQQLGPQGRLYAIDRDPQAVAVAK 61

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           E       +F +    FS L +Y+ ++G    VDG++ DLGVSS Q+D  +RGFSF   G
Sbjct: 62  EWQ---DPRFEIISGPFSSLHEYMAERGLLGKVDGLLLDLGVSSPQLDEAERGFSFMNDG 118

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM    G SA++ +  A+V D+  +L   GEE+ A+RIA AIV  R + P+  T+ 
Sbjct: 119 PLDMRMDPLHGESAAEWLLHADVDDIAWVLRTYGEERFANRIARAIVADRVTTPYTRTRQ 178

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ +I + V  +K    HPATRSFQALRI VN E++E+ + L+++   L  GG L V+SF
Sbjct: 179 LAEMIARVVP-NKEKHKHPATRSFQALRIHVNQELKEIEETLKASLSVLAPGGRLAVISF 237

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI--TKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+VK+F   +   +   R +  +       Q++    K + P   +V+ N RSRS
Sbjct: 238 HSLEDRIVKQFIRQQEKGIQPPRGLPITEDQIRKTQTLHSVGKAIKPADSEVSDNVRSRS 297

Query: 309 AKLRAGMR 316
           + LR   R
Sbjct: 298 SVLRVAER 305


>gi|256788289|ref|ZP_05526720.1| hypothetical protein SlivT_27704 [Streptomyces lividans TK24]
          Length = 309

 Score =  206 bits (523), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 119/306 (38%), Positives = 181/306 (59%), Gaps = 10/306 (3%)

Query: 24  LLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETM 78
           +L++ + LL PA   PG V++D T G GG+S +  +    + ++ALDRD  A+    E +
Sbjct: 1   MLQRCLDLLAPALQEPGAVVVDCTLGLGGHSEALLERFPEARLVALDRDKEALRLSGERL 60

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
             Y  + +L  A + +L D +   GV    GV+FDLGVSSMQ+D  DRGF++ +  PLDM
Sbjct: 61  APYGGRATLVHAVYDELPDVLDRLGVPRVQGVLFDLGVSSMQLDEADRGFAYAQDAPLDM 120

Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM  S G+SA++V+N     +L RIL   GEEKQA RI  A+V+ R+  PF  +  L  L
Sbjct: 121 RMDQSTGMSAAEVLNTYPPGELVRILRAYGEEKQAKRIVSAVVREREKEPFTNSARLVEL 180

Query: 195 IQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           I+  +   +K    +PA R+FQALRI VN E+  L + + +A +++  GG + V+S+HSL
Sbjct: 181 IRAALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVESVAVGGRIAVLSYHSL 240

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           EDRLVK+ FA+ +         +    +    + +T+   +PT+E++A NRR+  A+LR 
Sbjct: 241 EDRLVKQVFAAGAANTAPPGLPVVPEQYAPRLKLLTRGAELPTEEEIAENRRAAPARLRG 300

Query: 314 GMRTVE 319
             R  E
Sbjct: 301 AERIRE 306


>gi|82775489|ref|YP_401836.1| S-adenosyl-methyltransferase MraW [Shigella dysenteriae Sd197]
 gi|309787242|ref|ZP_07681854.1| S-adenosyl-methyltransferase MraW [Shigella dysenteriae 1617]
 gi|88909218|sp|Q32K10|RSMH_SHIDS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|81239637|gb|ABB60347.1| putative apolipoprotein [Shigella dysenteriae Sd197]
 gi|308924820|gb|EFP70315.1| S-adenosyl-methyltransferase MraW [Shigella dysenteriae 1617]
          Length = 313

 Score =  206 bits (523), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 125/311 (40%), Positives = 188/311 (60%), Gaps = 19/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN  P  + +D TFG GG+SR    ++G    ++A+DRDP A++  + 
Sbjct: 7   HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           T+ D +  FS+    FS L +YV ++     +DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 66  TIDDPR--FSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   T++L
Sbjct: 124 LDMRMDPTCGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKEL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L ++SFH
Sbjct: 184 AEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISFH 242

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306
           SLEDR+VK+F    SR  +V A   M             +++ K  ++P +E+VA N R+
Sbjct: 243 SLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGK--LMPGEEEVAENPRA 300

Query: 307 RSAKLRAGMRT 317
           RS+ LR   RT
Sbjct: 301 RSSVLRIAERT 311


>gi|50122745|ref|YP_051912.1| S-adenosyl-methyltransferase MraW [Pectobacterium atrosepticum
           SCRI1043]
 gi|54036180|sp|Q6D0H5|RSMH_ERWCT RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|49613271|emb|CAG76722.1| S-adenosyl-methyltransferase [Pectobacterium atrosepticum SCRI1043]
          Length = 314

 Score =  206 bits (523), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 125/309 (40%), Positives = 186/309 (60%), Gaps = 16/309 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN   G + +D TFG GG+SR    ++G    ++A+DRDP A+   + 
Sbjct: 7   HTTVLLDEAVNGLNIRSGGIYIDGTFGRGGHSRLILSQLGPEGRLLAIDRDPQAIEAAK- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            + D +  FS+    FS + DYV + G    +DGV+ DLGVSS Q+D  +RGFSF + GP
Sbjct: 66  AIDDSR--FSIIHGPFSAMADYVAELGLTGQIDGVLLDLGVSSPQLDDPERGFSFMRDGP 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G SA++ + +A   D+  +L   GEE+ A RIA AIV+R ++ P   T++L
Sbjct: 124 LDMRMDPTRGSSAAEWLMKAEADDIVWVLKTFGEERFAKRIARAIVERNRTEPMTRTKEL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           +SLI       + ++ HPATRSFQA+RI++N+E+EE+ + L  A   L   G L V+SFH
Sbjct: 184 ASLIAAASPIREKHK-HPATRSFQAIRIYINSELEEIERALEGALSVLAPQGRLSVISFH 242

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITK--KVVVPTQEDVAFNRRSR 307
           SLEDR+VK+F    SR  +V A   +          Q++    K ++P++ +VA N R+R
Sbjct: 243 SLEDRIVKRFIRHQSRGPQVPAGLPLTEEQLRSQGGQTLKPVGKKLMPSEAEVAENPRAR 302

Query: 308 SAKLRAGMR 316
           S+ LR   R
Sbjct: 303 SSVLRFAER 311


>gi|78356081|ref|YP_387530.1| S-adenosyl-methyltransferase MraW [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|88909199|sp|Q313R1|RSMH_DESDG RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|78218486|gb|ABB37835.1| methyltransferase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
          Length = 325

 Score =  206 bits (523), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 126/315 (40%), Positives = 176/315 (55%), Gaps = 15/315 (4%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAV 71
           H    HVPVLL++V+  L+P  G   LD T G GG+S +    C   + ++ LDRD  A+
Sbjct: 12  HQYTAHVPVLLDEVLHYLSPVRGGRYLDGTLGLGGHSEAIMNRCGGDAWLLGLDRDREAL 71

Query: 72  SCGQETMRDYKEQFSLFQATFSQ---LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
           +     +  + ++ +   A +SQ   + D +   G+DG + D+GVSSMQID   RGFSF 
Sbjct: 72  AAASGRLAPFGDRVTTRYACYSQFAAIMDEIGWTGLDGALIDIGVSSMQIDTPSRGFSFY 131

Query: 129 KSGPLDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
             GPLDMRM  SG   SA  +VN  +V+ L  I+   GE+  A RIA AIV  R   P +
Sbjct: 132 ADGPLDMRMDPSGDMPSAGVLVNTGSVERLKEIISTYGEDPMAGRIARAIVDARARNPIE 191

Query: 187 TTQDLSSLIQKT--VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           TT  L+ +++      +   +R HPATR+FQALR+ VN E+EEL   L +    +  GG 
Sbjct: 192 TTARLAEVVESAYPAKWRAKSRNHPATRTFQALRMAVNGELEELETFLAAIVDRMNPGGR 251

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP---SNAHPAVFQSITKKVVVPTQEDVA 301
           ++V++FHSLEDRLVK  F   +   +  RH IP       P V   +T+K V   Q ++ 
Sbjct: 252 IVVITFHSLEDRLVKNAFRDEAKGCLCPRH-IPVCVCGKKPRV-NVLTRKPVTAGQAELQ 309

Query: 302 FNRRSRSAKLRAGMR 316
            N R+ SAKLRA  R
Sbjct: 310 ANSRASSAKLRAAER 324


>gi|120597213|ref|YP_961787.1| S-adenosyl-methyltransferase MraW [Shewanella sp. W3-18-1]
 gi|146291586|ref|YP_001182010.1| S-adenosyl-methyltransferase MraW [Shewanella putrefaciens CN-32]
 gi|262826531|sp|A4Y2M8|RSMH_SHEPC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262826576|sp|A1REY8|RSMH_SHESW RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|120557306|gb|ABM23233.1| S-adenosyl-methyltransferase MraW [Shewanella sp. W3-18-1]
 gi|145563276|gb|ABP74211.1| S-adenosyl-methyltransferase MraW [Shewanella putrefaciens CN-32]
          Length = 313

 Score =  206 bits (523), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 120/308 (38%), Positives = 177/308 (57%), Gaps = 15/308 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQE 76
           H+ VLL + +  LN     + +D TFG GG+SR    ++G N  +IA+DRDP A+   ++
Sbjct: 7   HLSVLLAETVGGLNIKDDGIYIDGTFGRGGHSRQILQRLGDNGRLIAIDRDPQAIEAAKQ 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              D +  F +    F QL DYV D G    +DGV+ DLGVSS Q+D  +RGFSF + GP
Sbjct: 67  FSDDPR--FQIVHGGFGQLADYVEDLGLVGKIDGVLLDLGVSSPQLDDAERGFSFLRDGP 124

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G +A+  +  A ++D+  +    GEEK A  IA  I   R   PF  T+DL
Sbjct: 125 LDMRMDNSQGQTAAQWLAHAEIEDMAWVFKTYGEEKNARHIARCIAADRDKTPFLRTKDL 184

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI +     + N+ HPATR FQA+RI++N+E++++ Q L  A   L   G L ++SFH
Sbjct: 185 ADLIARITKNKERNK-HPATRVFQAIRIYINSELDQIDQALEGALAVLAPQGRLSIISFH 243

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP---SNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SLEDR+VK+F   R  +  +V + +P      + +       K ++P+ E++  N R+RS
Sbjct: 244 SLEDRIVKRFI-RRHSQGESVPYGLPITEDQINKSRKLRAIGKAIMPSDEEIERNARARS 302

Query: 309 AKLRAGMR 316
           + LR   R
Sbjct: 303 SVLRIAER 310


>gi|308177867|ref|YP_003917273.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Arthrobacter arilaitensis Re117]
 gi|307745330|emb|CBT76302.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Arthrobacter arilaitensis Re117]
          Length = 330

 Score =  206 bits (523), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 122/317 (38%), Positives = 185/317 (58%), Gaps = 15/317 (4%)

Query: 20  HVPVLLEKVIALLNP------APGK--VILDATFGAGGYSRSFCKMGSNV--IALDRDPF 69
           HVPVLL++ + LL P      A G+  +++D T G GG+S +  +   N+  I LDRD  
Sbjct: 14  HVPVLLDRCVNLLAPGIERANAEGRRAIVVDCTLGMGGHSEAILQRFENLHLIGLDRDEQ 73

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFS 126
           A       +  ++++  L  A + ++ D V D    G+DGV+FDLGVSS+Q+D  +RGF+
Sbjct: 74  AHELAGARLAPFQDRIDLVHAVYDEIADVVEDLGFPGIDGVLFDLGVSSLQLDERERGFA 133

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           +    PLDMRM  S G +A D+VN  +  +L RI+   GEEK A RI+ AIV+ R  +  
Sbjct: 134 YSYDAPLDMRMDTSVGPTAEDLVNDLDRDELLRIIRQWGEEKFAGRISTAIVEARAKSRI 193

Query: 186 QTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
            TT +L  +I+  V   +  N  HPA R+FQALRI VN E++ L + + +A  AL  GG 
Sbjct: 194 STTAELVEVIRSVVPAAAARNHGHPAKRTFQALRIAVNEELDVLERAIPAAMGALNIGGR 253

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           ++V+S+HSLED++ K+ F   S         +    H A ++ +TK    P++ ++A N 
Sbjct: 254 VVVMSYHSLEDKITKRHFVQGSTSSAPPGFPVELEEHKAEYKVLTKGTEKPSEHEIAENS 313

Query: 305 RSRSAKLRAGMRTVERS 321
           R+ SA+LRA  R ++RS
Sbjct: 314 RAASARLRAVERVLKRS 330


>gi|117622368|ref|YP_851281.1| S-adenosyl-methyltransferase MraW [Escherichia coli APEC O1]
 gi|331640535|ref|ZP_08341683.1| S-adenosyl-methyltransferase MraW [Escherichia coli H736]
 gi|331645192|ref|ZP_08346303.1| S-adenosyl-methyltransferase MraW [Escherichia coli M605]
 gi|331650979|ref|ZP_08352007.1| S-adenosyl-methyltransferase MraW [Escherichia coli M718]
 gi|331671601|ref|ZP_08372399.1| S-adenosyl-methyltransferase MraW [Escherichia coli TA280]
 gi|331680655|ref|ZP_08381314.1| S-adenosyl-methyltransferase MraW [Escherichia coli H591]
 gi|115511492|gb|ABI99566.1| S-adenosyl-methyltransferase [Escherichia coli APEC O1]
 gi|331040281|gb|EGI12488.1| S-adenosyl-methyltransferase MraW [Escherichia coli H736]
 gi|331045949|gb|EGI18068.1| S-adenosyl-methyltransferase MraW [Escherichia coli M605]
 gi|331051433|gb|EGI23482.1| S-adenosyl-methyltransferase MraW [Escherichia coli M718]
 gi|331071446|gb|EGI42803.1| S-adenosyl-methyltransferase MraW [Escherichia coli TA280]
 gi|331072118|gb|EGI43454.1| S-adenosyl-methyltransferase MraW [Escherichia coli H591]
          Length = 346

 Score =  206 bits (523), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 125/311 (40%), Positives = 188/311 (60%), Gaps = 19/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN  P  + +D TFG GG+SR    ++G    ++A+DRDP A++  + 
Sbjct: 40  HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK- 98

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           T+ D +  FS+    FS L +YV ++     +DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 99  TIDDPR--FSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 156

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   T++L
Sbjct: 157 LDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKEL 216

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L ++SFH
Sbjct: 217 AEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISFH 275

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306
           SLEDR+VK+F    SR  +V A   M             +++ K  ++P +E+VA N R+
Sbjct: 276 SLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGK--LMPGEEEVAENPRA 333

Query: 307 RSAKLRAGMRT 317
           RS+ LR   RT
Sbjct: 334 RSSVLRIAERT 344


>gi|15599616|ref|NP_253110.1| S-adenosyl-methyltransferase MraW [Pseudomonas aeruginosa PAO1]
 gi|107099995|ref|ZP_01363913.1| hypothetical protein PaerPA_01001016 [Pseudomonas aeruginosa PACS2]
 gi|254244769|ref|ZP_04938091.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|296391129|ref|ZP_06880604.1| S-adenosyl-methyltransferase MraW [Pseudomonas aeruginosa PAb1]
 gi|20139184|sp|Q9HVZ5|RSMH_PSEAE RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|9950652|gb|AAG07808.1|AE004856_19 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
 gi|126198147|gb|EAZ62210.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
          Length = 313

 Score =  205 bits (522), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 124/305 (40%), Positives = 185/305 (60%), Gaps = 16/305 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQE 76
           H+ VLLE+ ++ L P      LD TFG GG+SR+  +    G  ++  D+DP A+  G+ 
Sbjct: 7   HITVLLEEAVSALAPREDGCYLDGTFGRGGHSRALLEKLGAGGRLLGFDKDPQAIQTGK- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            +     +F + Q +F++L D V  +G    VDGV+ DLGVSS Q+D  +RGFSF   GP
Sbjct: 66  ALAAEDGRFVIVQRSFAELGDEVRARGLEGRVDGVLLDLGVSSPQLDDPERGFSFLNDGP 125

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+   GISA++ +  A  +++ R+    GEE+ A R+A AIV+RRQ  PF+ T DL
Sbjct: 126 LDMRMNPGQGISAAEFIANATEEEIARVFKEYGEERFAKRMARAIVQRRQERPFERTADL 185

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + +I       +  + +PATR+FQ LRI VNNE+ +L +GL +A ++L  GG L+V+SFH
Sbjct: 186 AEVITVANPAWEKGK-NPATRAFQGLRIHVNNELGDLERGLDAALESLAVGGRLVVISFH 244

Query: 252 SLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVP---TQEDVAFNRRSR 307
           SLEDR+VK F    + G+   +   +P  +   VF+   K +  P   ++E++  N RSR
Sbjct: 245 SLEDRIVKLFMRKHAKGEADNLPRDLPIRSK--VFEPRLKLLGKPQYASEEELKANPRSR 302

Query: 308 SAKLR 312
           SA +R
Sbjct: 303 SAVMR 307


>gi|304310311|ref|YP_003809909.1| Methyltransferase involved in cell envelope biogenesis [gamma
           proteobacterium HdN1]
 gi|301796044|emb|CBL44248.1| Methyltransferase involved in cell envelope biogenesis [gamma
           proteobacterium HdN1]
          Length = 310

 Score =  205 bits (522), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 122/301 (40%), Positives = 180/301 (59%), Gaps = 10/301 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPFAVSCGQE 76
           H PVLL++VI  L      + +D TFG GG++R+        + ++  D+DP A++ G +
Sbjct: 6   HRPVLLQEVIENLLTDTAGIYVDGTFGRGGHARALLARLSADARLVGFDKDPEAIAVGLQ 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              +   +FS+   +F+++       G    V GV+ DLGVSS Q+D   RGFSF   GP
Sbjct: 66  LAAE-DARFSIVHGSFAEIGTRPELAGLQGTVSGVLLDLGVSSPQLDDASRGFSFMNDGP 124

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+  +G SA+D +N  + K +  +L  LGEE+ A RIA AIV +R+ +P  TT+ L
Sbjct: 125 LDMRMNNDAGESAADWLNHEDAKQIEWVLRELGEERFAGRIARAIVAQREMSPLCTTKQL 184

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI K V   + ++ HPATRSFQA+RI+VN E+++L  GL ++ + +K GG + V+SFH
Sbjct: 185 ADLIYKAVPVREKHK-HPATRSFQAVRIWVNRELQDLEVGLAASLELVKVGGRIAVISFH 243

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+VK+FF          R +  + A   +      K V P+ ++VA N RSRSA L
Sbjct: 244 SLEDRIVKQFFEKHVKGEQLPRGLPVTGAALGIRLRHVAKKVRPSDDEVAVNVRSRSATL 303

Query: 312 R 312
           R
Sbjct: 304 R 304


>gi|257791849|ref|YP_003182455.1| S-adenosyl-methyltransferase MraW [Eggerthella lenta DSM 2243]
 gi|257475746|gb|ACV56066.1| S-adenosyl-methyltransferase MraW [Eggerthella lenta DSM 2243]
          Length = 318

 Score =  205 bits (522), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 120/313 (38%), Positives = 181/313 (57%), Gaps = 18/313 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H PVLL + +   N  P    +DAT G  G+S    K+   G  +I +D+D  A++  + 
Sbjct: 7   HTPVLLAECLEYSNLKPQHTFVDATLGGAGHSFEAAKLIGSGGTLIGIDQDEVALAAARR 66

Query: 77  TM----RDYKEQFSLFQATFSQLQDY-----VPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
            +     D + +  L +  F  + +      VP  GVD V+FDLGVSS+QID   RGFSF
Sbjct: 67  KLGTLPDDVRPRLELVRGNFGNMDEALLSTEVP--GVDAVLFDLGVSSVQIDTPSRGFSF 124

Query: 128 QKSGPLDMRMSCS--GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           +++GPLDMRM      ++A++++N     DLTRI+    +EK ASRIA   V+ RQ+AP 
Sbjct: 125 KENGPLDMRMDPGKQTLTAAEIINTYTAADLTRIIRTYSDEKWASRIADFAVRARQTAPI 184

Query: 186 QTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           +T++ L  +I+  +  S +    HPA R+FQALRI VN E++ L  GL +A + L  GG 
Sbjct: 185 ETSEQLVDIIKAAIPASARRAGGHPAKRTFQALRIEVNGELDVLRSGLDAAIRWLNPGGR 244

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFN 303
           L+V+S+HSLEDR+VK+ FA  + +      + +       +   +T+K V+PT E++  N
Sbjct: 245 LVVISYHSLEDRIVKETFAKFANRCTCPPDLPVCMCGKQPILDIVTRKPVLPTAEEIERN 304

Query: 304 RRSRSAKLRAGMR 316
            R+RSAKLR   +
Sbjct: 305 ARARSAKLRVAQK 317


>gi|289826154|ref|ZP_06545266.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
          Length = 279

 Score =  205 bits (522), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 111/255 (43%), Positives = 164/255 (64%), Gaps = 12/255 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN  P  + +D TFG GG+SR    ++G    ++A+DRDP A++  Q 
Sbjct: 7   HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAQ- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           T+ D +  FS+    FS L DYV ++     +DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 66  TINDPR--FSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G SA++ +  A   D+  +L   GEE+ A RIAHAIV+R +  P   T++L
Sbjct: 124 LDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIAHAIVERNREQPMTRTKEL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L +GG L ++SFH
Sbjct: 184 AEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLASGGRLSIISFH 242

Query: 252 SLEDRLVKKFFASRS 266
           SLEDR+VK+F   +S
Sbjct: 243 SLEDRIVKRFMREQS 257


>gi|222031913|emb|CAP74651.1| S-adenosyl-L-methionine-dependent methyltransferase [Escherichia
           coli LF82]
 gi|312944688|gb|ADR25515.1| S-adenosyl-methyltransferase MraW [Escherichia coli O83:H1 str. NRG
           857C]
          Length = 313

 Score =  205 bits (522), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 125/311 (40%), Positives = 188/311 (60%), Gaps = 19/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN  P  + +D TFG GG+SR    ++G    ++A+DRDP A++  + 
Sbjct: 7   HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           T+ D +  FS+    FS L +YV ++     +DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 66  TIDDPR--FSIIYGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   T++L
Sbjct: 124 LDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKEL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L ++SFH
Sbjct: 184 AEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISFH 242

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306
           SLEDR+VK+F    SR  +V A   M             +++ K  ++P +E+VA N R+
Sbjct: 243 SLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGK--LMPGEEEVAENPRA 300

Query: 307 RSAKLRAGMRT 317
           RS+ LR   RT
Sbjct: 301 RSSVLRIAERT 311


>gi|74310701|ref|YP_309120.1| S-adenosyl-methyltransferase MraW [Shigella sonnei Ss046]
 gi|88909219|sp|Q3Z5S7|RSMH_SHISS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|73854178|gb|AAZ86885.1| putative apolipoprotein [Shigella sonnei Ss046]
 gi|323165965|gb|EFZ51745.1| S-adenosyl-methyltransferase MraW [Shigella sonnei 53G]
          Length = 313

 Score =  205 bits (522), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 125/311 (40%), Positives = 188/311 (60%), Gaps = 19/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN  P  + +D TFG GG+SR    ++G    ++A+DRDP A++  + 
Sbjct: 7   HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           T+ D +  FS+    FS L +YV ++     +DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 66  TIDDPR--FSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   T++L
Sbjct: 124 LDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKEL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L ++SFH
Sbjct: 184 AEVVAVATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISFH 242

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306
           SLEDR+VK+F    SR  +V A   M             +++ K  ++P +E+VA N R+
Sbjct: 243 SLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGK--LMPGEEEVAENPRA 300

Query: 307 RSAKLRAGMRT 317
           RS+ LR   RT
Sbjct: 301 RSSVLRIAERT 311


>gi|292489365|ref|YP_003532252.1| S-adenosyl methionine adenyltransferase [Erwinia amylovora
           CFBP1430]
 gi|292898411|ref|YP_003537780.1| S-adenosyl-methyltransferase [Erwinia amylovora ATCC 49946]
 gi|291198259|emb|CBJ45365.1| S-adenosyl-methyltransferase [Erwinia amylovora ATCC 49946]
 gi|291554799|emb|CBA22629.1| S-adenosyl methionine adenyltransferase [Erwinia amylovora
           CFBP1430]
 gi|312173530|emb|CBX81784.1| S-adenosyl methionine adenyltransferase [Erwinia amylovora ATCC
           BAA-2158]
          Length = 312

 Score =  205 bits (522), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 126/313 (40%), Positives = 189/313 (60%), Gaps = 21/313 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN  P  + +D TFG GG+SR    ++G +  + A+DRDP A++   +
Sbjct: 7   HTTVLLDEAVNALNIKPDGIYIDGTFGRGGHSRLILSQLGEHGRLYAIDRDPQAIAAAAD 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  +F++    FS L +Y   +G    +DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 67  IT---DPRFTIIHGPFSALAEYAEQRGLTGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G SA++ + +A   D+T +L   GEE+ A RIA AIV+R +  P   T++L
Sbjct: 124 LDMRMDPTRGQSAAEWLLKAEESDITFVLKTFGEERFARRIARAIVERNRQQPMTRTKEL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + +I       K+   HPATRSFQA+RI+VN+E+EE+ Q L+ A  AL AGG L ++SFH
Sbjct: 184 ADVIYAATPV-KDKFKHPATRSFQAIRIWVNSELEEIEQALKGALSALAAGGRLSIISFH 242

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP------SNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           SLEDR+VK+F   +S +   V H +P      S+      +++ K  ++P + +VA N R
Sbjct: 243 SLEDRIVKRFMREQS-RGPQVPHGLPMTEAQLSSLGGRQLKALGK--MMPGESEVADNPR 299

Query: 306 SRSAKLRAGMRTV 318
           +RS+ LR   RT 
Sbjct: 300 ARSSVLRIAERTA 312


>gi|283850522|ref|ZP_06367810.1| S-adenosyl-methyltransferase MraW [Desulfovibrio sp. FW1012B]
 gi|283574093|gb|EFC22065.1| S-adenosyl-methyltransferase MraW [Desulfovibrio sp. FW1012B]
          Length = 325

 Score =  205 bits (522), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 124/304 (40%), Positives = 176/304 (57%), Gaps = 11/304 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H+PVLL +V+  L   PG  ILDAT G GG+ +   +     ++V+ LDRD  A+S    
Sbjct: 7   HIPVLLREVVEFLAIRPGMRILDATAGLGGHIKGMLEAAGGEASVLGLDRDREALSEAGR 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  Y ++  L +  +S+    + + G   VD  + D G+SS+Q+D  +RGF F   GPL
Sbjct: 67  RLEAYGDRVRLVRTRYSRFPAALAEAGWETVDAALLDAGMSSLQLDDPERGFGFLTDGPL 126

Query: 134 DMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           DMRM     G SA  +VN A+   L  I+   GE+ QA RIA AIV  R++AP  TT+ L
Sbjct: 127 DMRMGVEDGGESAEGLVNLASFARLREIIREYGEDPQAGRIARAIVAERETAPITTTRRL 186

Query: 192 SSLIQKT--VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           + ++       +    R HPATR+FQALR+ VN+E+ EL + LR+    +  GG + V+S
Sbjct: 187 AEVVAAAYPAKWRAMARQHPATRTFQALRMAVNDELGELEEFLRAIPGHIAPGGRVAVIS 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPS-NAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDRLVK+ F   +   +  R  I     H A F+ +TKK V+  +E+VA N R+RS
Sbjct: 247 FHSLEDRLVKRAFRLEATDCLCPREQIVCVCGHRARFRILTKKPVMAGEEEVAANSRARS 306

Query: 309 AKLR 312
           AKLR
Sbjct: 307 AKLR 310


>gi|213647633|ref|ZP_03377686.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
          Length = 293

 Score =  205 bits (522), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 111/255 (43%), Positives = 164/255 (64%), Gaps = 12/255 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN  P  + +D TFG GG+SR    ++G    ++A+DRDP A++  Q 
Sbjct: 7   HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAQ- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           T+ D +  FS+    FS L DYV ++     +DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 66  TINDPR--FSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G SA++ +  A   D+  +L   GEE+ A RIAHAIV+R +  P   T++L
Sbjct: 124 LDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIAHAIVERNREQPMTRTKEL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L +GG L ++SFH
Sbjct: 184 AEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLASGGRLSIISFH 242

Query: 252 SLEDRLVKKFFASRS 266
           SLEDR+VK+F   +S
Sbjct: 243 SLEDRIVKRFMREQS 257


>gi|49084936|gb|AAT51240.1| PA4420 [synthetic construct]
          Length = 314

 Score =  205 bits (522), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 124/305 (40%), Positives = 185/305 (60%), Gaps = 16/305 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQE 76
           H+ VLLE+ ++ L P      LD TFG GG+SR+  +    G  ++  D+DP A+  G+ 
Sbjct: 7   HITVLLEEAVSALAPREDGCYLDGTFGRGGHSRALLEKLGAGGRLLGFDKDPQAIQTGK- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            +     +F + Q +F++L D V  +G    VDGV+ DLGVSS Q+D  +RGFSF   GP
Sbjct: 66  ALAAEDGRFVIVQRSFAELGDEVRARGLEGRVDGVLLDLGVSSPQLDDPERGFSFLNDGP 125

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+   GISA++ +  A  +++ R+    GEE+ A R+A AIV+RRQ  PF+ T DL
Sbjct: 126 LDMRMNPGQGISAAEFIANATEEEIARVFKEYGEERFAKRMARAIVQRRQERPFERTADL 185

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + +I       +  + +PATR+FQ LRI VNNE+ +L +GL +A ++L  GG L+V+SFH
Sbjct: 186 AEVITVANPAWEKGK-NPATRAFQGLRIHVNNELGDLERGLDAALESLAVGGRLVVISFH 244

Query: 252 SLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVP---TQEDVAFNRRSR 307
           SLEDR+VK F    + G+   +   +P  +   VF+   K +  P   ++E++  N RSR
Sbjct: 245 SLEDRIVKLFMRKHAKGEADNLPRDLPIRSK--VFEPRLKLLGKPQYASEEELKANPRSR 302

Query: 308 SAKLR 312
           SA +R
Sbjct: 303 SAVMR 307


>gi|77361427|ref|YP_341002.1| S-adenosyl-methyltransferase MraW [Pseudoalteromonas haloplanktis
           TAC125]
 gi|88909212|sp|Q3IFZ6|RSMH_PSEHT RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|76876338|emb|CAI87560.1| S-adenosyl-dependent methyltransferase [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 312

 Score =  205 bits (522), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 124/310 (40%), Positives = 186/310 (60%), Gaps = 17/310 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYS-RSFCKMGSN--VIALDRDPFAVSCGQ 75
           +HV VL+++ I  L   P  + +D TFG GG+S +   ++GS   + A+D+DP A+   +
Sbjct: 6   EHVSVLMDETIDALAIKPDGIYMDGTFGRGGHSGQILARLGSEGRLQAIDQDPQAIKSAE 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +   D +  F++    FS L            VDG++ D+GVSS Q+D   RGFSF K G
Sbjct: 66  KFADDPR--FAIAHTRFSNLYGVAEQNDLIGKVDGILLDIGVSSPQLDDALRGFSFMKDG 123

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM   +G SA+  + +A + D+T ++  LGEEK   RIAH +++ R+  P  TT+ 
Sbjct: 124 PLDMRMDPTTGRSAAQWLAEAELDDITHVIKKLGEEKFGKRIAHKVLEVREHTPITTTKQ 183

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ L+ + V   K+   HPATR+FQA+RI++N+E+EE+   L+SA K LK GG L+V+SF
Sbjct: 184 LADLVDEAVPV-KDKFKHPATRTFQAIRIYINSELEEIQTALQSAIKVLKPGGRLVVISF 242

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV----VPTQEDVAFNRRS 306
           HSLEDR+VK+F   +S      R +  ++A   + Q++T K V     P+  +V  N RS
Sbjct: 243 HSLEDRIVKQFIRKQSRGETLPRGLPLTDAQ--INQNLTLKAVGKAIKPSAAEVERNPRS 300

Query: 307 RSAKLRAGMR 316
           RS+ LR   R
Sbjct: 301 RSSVLRIAQR 310


>gi|166710645|ref|ZP_02241852.1| S-adenosyl-methyltransferase MraW [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 347

 Score =  205 bits (521), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 125/299 (41%), Positives = 175/299 (58%), Gaps = 11/299 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HVPVL  +V+  L        LD TFG GG++R   +    G  ++ +D+DP A++  ++
Sbjct: 18  HVPVLYTQVLDGLQVTENGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDPEAIAVAEQ 77

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
           T      + S+ + +F+ L   V    VDG++ DLGVSS Q+D   RGFSF K GPLDMR
Sbjct: 78  TF-GGDARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLDVAGRGFSFGKDGPLDMR 136

Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M   SG SA+  + QA  +++  +L   GEE+Q+ RIA AIV RR   P   T  L+ LI
Sbjct: 137 MDPDSGQSAAQWLAQATDREIADVLWTYGEERQSRRIARAIVARRAEQPLLRTAQLADLI 196

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
             +V    +++ HPATRSFQA+RI++N E+++L  GL +A  ALK GG L V+SFHSLED
Sbjct: 197 -ASVMPRGDSKTHPATRSFQAIRIYINRELDDLETGLDAALAALKPGGRLAVISFHSLED 255

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           R+VK+F A R  K       +P  A P V   Q ++  +     E +  N R+RSA LR
Sbjct: 256 RIVKQFMA-RYAKAPPSNRRLP-EAQPFVPTLQLVSGAIKADDAE-LNVNPRARSAVLR 311


>gi|319424760|gb|ADV52834.1| S-adenosyl-methyltransferase MraW [Shewanella putrefaciens 200]
          Length = 313

 Score =  205 bits (521), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 120/308 (38%), Positives = 178/308 (57%), Gaps = 15/308 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQE 76
           H+ VLL + +  LN     + +D TFG GG+SR    ++G N  +IA+DRDP A+   ++
Sbjct: 7   HLSVLLAETVGGLNIKDDGIYIDGTFGRGGHSRQILQRLGDNGRLIAIDRDPQAIEAAKQ 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              D +  F +    F QL DYV D G    +DGV+ DLGVSS Q+D  +RGFSF + GP
Sbjct: 67  FSDDPR--FQIVHGGFGQLADYVEDLGLVGKIDGVLLDLGVSSPQLDDAERGFSFLRDGP 124

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G +A+  + +A ++D+  +    GEEK A  IA  I   R   PF  T+DL
Sbjct: 125 LDMRMDNSQGQTAAQWLARAEIEDMAWVFKTYGEEKNARHIARCIAADRDKTPFLRTKDL 184

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI +     + N+ HPATR FQA+RI++N+E++++ Q L  A   L   G L ++SFH
Sbjct: 185 ADLIVRITKNKERNK-HPATRVFQAIRIYINSELDQIDQALEGALAVLAPQGRLSIISFH 243

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP---SNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SLEDR+VK+F   R  +  +V + +P      + +       K ++P+ E++  N R+RS
Sbjct: 244 SLEDRIVKRFI-RRHSQGESVPYGLPITEDQINKSRKLRAIGKAIMPSDEEIERNARARS 302

Query: 309 AKLRAGMR 316
           + LR   R
Sbjct: 303 SVLRIAER 310


>gi|263506507|sp|Q2NZB1|RSMH_XANOM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263506516|sp|B2SNY6|RSMH_XANOP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 337

 Score =  205 bits (521), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 125/299 (41%), Positives = 175/299 (58%), Gaps = 11/299 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HVPVL  +V+  L        LD TFG GG++R   +    G  ++ +D+DP A++  ++
Sbjct: 8   HVPVLYTQVLDGLQVTENGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDPDAIAVAEQ 67

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
           T      + S+ + +F+ L   V    VDG++ DLGVSS Q+D   RGFSF K GPLDMR
Sbjct: 68  TF-GGDARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLDVAGRGFSFGKDGPLDMR 126

Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M   SG SA+  + QA  +++  +L   GEE+Q+ RIA AIV RR   P   T  L+ LI
Sbjct: 127 MDPDSGQSAAQWLAQATDREIADVLWAYGEERQSRRIARAIVARRAEQPLLRTAQLADLI 186

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
             +V    +++ HPATRSFQA+RI++N E+++L  GL +A  ALK GG L V+SFHSLED
Sbjct: 187 -ASVMPRGDSKTHPATRSFQAIRIYINRELDDLETGLDAALAALKPGGRLAVISFHSLED 245

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           R+VK+F A R  K       +P  A P V   Q ++  +     E +  N R+RSA LR
Sbjct: 246 RIVKQFMA-RYAKAPPSNRRLP-EAQPFVPTLQLVSGAIKADDTE-LNVNPRARSAVLR 301


>gi|20808080|ref|NP_623251.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter tengcongensis
           MB4]
 gi|254479532|ref|ZP_05092851.1| S-adenosyl-methyltransferase MraW [Carboxydibrachium pacificum DSM
           12653]
 gi|21759279|sp|Q8R9F9|RSMH_THETN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|20516663|gb|AAM24855.1| predicted S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [Thermoanaerobacter
           tengcongensis MB4]
 gi|214034534|gb|EEB75289.1| S-adenosyl-methyltransferase MraW [Carboxydibrachium pacificum DSM
           12653]
          Length = 308

 Score =  205 bits (521), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 120/304 (39%), Positives = 177/304 (58%), Gaps = 8/304 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77
           H  VLL++ I  LN  P  + +D T G GG+S    K      +IA+DRD  A+   +E 
Sbjct: 5   HKSVLLKETIEHLNINPEGIYVDGTLGGGGHSEEILKRLTTGKLIAIDRDEEAILAAKER 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++DYK    + +  F  +++ + + G   VDG++ DLGVSS Q++  +RGFS+ K  PLD
Sbjct: 65  LKDYKNVIYI-KDNFKNIKEILRNLGIEKVDGILLDLGVSSYQLEEVERGFSYMKDAPLD 123

Query: 135 MRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM   S  SA DVVN+ + K+L R++   GEEK ASRIA  IV+ R+    +TT  L  
Sbjct: 124 MRMDKTSPFSAYDVVNRYSEKELERVIREYGEEKWASRIAKFIVEERKKGDIKTTSQLVE 183

Query: 194 LIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +I+K +  S +    HPA R+FQA+RI VN E+++L + L    + L+  G + V++FHS
Sbjct: 184 IIKKAIPASARRTGPHPAKRTFQAIRIEVNEELKDLDRALEDMVEVLRGKGRIAVITFHS 243

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK  F            +  +     V + ITKK ++P++E+V  N RSRSAKLR
Sbjct: 244 LEDRIVKNTFKKLENPCTCPPGLPCTCGKQPVIKIITKKPILPSKEEVEENPRSRSAKLR 303

Query: 313 AGMR 316
              +
Sbjct: 304 VAEK 307


>gi|332027021|gb|EGI67117.1| Putative S-adenosyl-L-methionine-dependent methyltransferase
           [Acromyrmex echinatior]
          Length = 325

 Score =  205 bits (521), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 122/323 (37%), Positives = 182/323 (56%), Gaps = 30/323 (9%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQETMRDY 81
           + ++V+  + P+PGK  +D TFGAGG++    +   N+   ALDRDP    C ++  + Y
Sbjct: 1   MAQEVLTYIAPSPGKTYIDMTFGAGGHATKLLEHSPNIKIFALDRDPLGFECAKQLSQRY 60

Query: 82  KEQFSLFQATFSQL----QDY-VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
             Q       FS+L    + Y + +  +DG++FD G SSMQ D   RGFS  K GPLDMR
Sbjct: 61  PGQVIPLLGKFSELPQLLEPYNIKENSIDGILFDFGCSSMQFDTASRGFSLSKDGPLDMR 120

Query: 137 MS---C-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQTTQDL 191
           M    C   ++A++V+ +A  +DLTRI+ + G+EK+A +IA AI+  R      +TT++L
Sbjct: 121 MDGFRCPKQLTAANVLERATEEDLTRIIKVYGQEKRAKKIARAIIDSRYMFKKLETTKEL 180

Query: 192 SSLIQKTV-----YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           + LI+ T+       S     H AT++FQALRIFVNNE+ E+  G+  A+  LK  G LI
Sbjct: 181 AQLIESTLDGEIRRDSLGRFSHSATKTFQALRIFVNNELNEINYGILLAQIYLKLSGCLI 240

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF-------------QSITKKVV 293
            +SFHSLED +VK+  +      +A    +    +   F             + + K V+
Sbjct: 241 TISFHSLEDTIVKRHISGNITDNVANTVALKYAHYGKTFDKDEFERLTKIPWKMMHKHVL 300

Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316
           +PT E++  N RSRSAKLRA M+
Sbjct: 301 IPTAEEIETNPRSRSAKLRAIMK 323


>gi|326333502|ref|ZP_08199743.1| S-adenosyl-methyltransferase MraW [Nocardioidaceae bacterium
           Broad-1]
 gi|325948702|gb|EGD40801.1| S-adenosyl-methyltransferase MraW [Nocardioidaceae bacterium
           Broad-1]
          Length = 336

 Score =  205 bits (521), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 124/312 (39%), Positives = 193/312 (61%), Gaps = 11/312 (3%)

Query: 20  HVPVLLEKVIALLNPA--PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQ 75
           HVPV+L++++ LL PA   G V++D T G GG++ +  +   GS VI +DRD +A+    
Sbjct: 11  HVPVMLDRIVDLLAPALADGGVLVDCTTGHGGHTEAVLERIPGSRVIGIDRDTYALGIAG 70

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E +  + ++++   A + ++ D V ++G+D    V+FDLGVSSMQ+D  +RGF++ +  P
Sbjct: 71  ERLARFGDRWTGVHAVYDEILDVVAEQGLDEVQAVLFDLGVSSMQLDQRERGFAYAEDAP 130

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G +A+DV+N  +  DLTRIL   GEEK A +IAHA+VKRR+  PF T+  L
Sbjct: 131 LDMRMDATRGQTAADVLNTYSAADLTRILRDYGEEKFAKKIAHAVVKRREKQPFTTSGPL 190

Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             L+   +   ++    HPA R+FQALR+ VN+E+  L   L ++ +A+  GG ++V S+
Sbjct: 191 VELLYAEIPAPARRTGGHPAKRTFQALRMEVNDELGALRTALPASLEAVGVGGRVVVESY 250

Query: 251 HSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDRL K+ FA  +   V      +P +A P+ F+ +T+     T+ ++  N R+ S 
Sbjct: 251 HSLEDRLTKRAFAEATKLDVPPDLPFVPPDAEPS-FRLLTRGAEQATEAEIEENPRAASV 309

Query: 310 KLRAGMRTVERS 321
           +LRA  R   RS
Sbjct: 310 RLRAVERVKPRS 321


>gi|312898967|ref|ZP_07758355.1| S-adenosyl-methyltransferase MraW [Megasphaera micronuciformis
           F0359]
 gi|310620129|gb|EFQ03701.1| S-adenosyl-methyltransferase MraW [Megasphaera micronuciformis
           F0359]
          Length = 310

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 118/305 (38%), Positives = 174/305 (57%), Gaps = 8/305 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HV VL E+ I  +   P  + +D T G GG+SR+   +      +I LD+D  A+    E
Sbjct: 5   HVSVLREETIHAVLGDPAGIYVDCTLGGGGHSRALADLLVKDGLIIGLDQDEDAIRAATE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            M+D   +F+  Q  F  L + + D     VDG++FDLGVSS Q+D  +RGFS+Q  GPL
Sbjct: 65  RMQDAPCRFTAVQRNFRYLGEVLDDLNIPTVDGIMFDLGVSSYQLDNPERGFSYQHDGPL 124

Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM   G  SA DV+N  +  DL RI+   GEE+ A RIA  IVK R+  PF+ T++L 
Sbjct: 125 DMRMDRHGKKSAYDVINAYDEADLYRIIKDYGEERWAKRIASFIVKARREKPFERTEELV 184

Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I++ +   ++ +  HPA R+FQA+RI VN+E++ L      A   LK GG + +++FH
Sbjct: 185 RVIKQAIPAGARKDGPHPAKRTFQAVRIEVNDELKILQDTFEIAANRLKPGGHIGIITFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+ K+     +   +   H+     H      +  K + P++E++  N R+RSAKL
Sbjct: 245 SLEDRIAKQTLRKLATGCICPPHIPVCTCHHEAILKVKGKGIGPSKEELELNPRARSAKL 304

Query: 312 RAGMR 316
           R G R
Sbjct: 305 RVGTR 309


>gi|94501904|ref|ZP_01308414.1| S-adenosyl-methyltransferase [Oceanobacter sp. RED65]
 gi|94425957|gb|EAT10955.1| S-adenosyl-methyltransferase [Oceanobacter sp. RED65]
          Length = 308

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 120/308 (38%), Positives = 182/308 (59%), Gaps = 12/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+ VLL + +  LN  P  + +D TFG GG+++      S    VI +D+DP A++ GQE
Sbjct: 4   HITVLLHEAVEALNQDPDGLYVDCTFGRGGHTKLLLDQLSEQGRVIGIDKDPRAIATGQE 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            M    ++F +   +F+QL+++V   G    + GV+ DLGVSS Q+D  +RGFSF + GP
Sbjct: 64  LMAQ-DQRFQICHGSFAQLREFVEAHGQGKELSGVLMDLGVSSPQLDEAERGFSFMQDGP 122

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+  +GI+A + +  A+ +++  +    GEE+ + R+A AIV+RR   PF  T DL
Sbjct: 123 LDMRMNTEAGITAQEWIATASEEEIANVFYEFGEERASRRLARAIVERRAIEPFTRTLDL 182

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + +I+      + N+ HPATRSFQ LRIF+NNE+ +L   L    + L  GG L+V+SFH
Sbjct: 183 AEVIKHAHPRWEKNK-HPATRSFQGLRIFLNNELGDLESVLDETVEMLAKGGRLVVISFH 241

Query: 252 SLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK+F   +  G  +     I     P   + I K +   ++E+V  N RSRSA 
Sbjct: 242 SLEDRIVKRFIRDKEKGPQLPPDLPIMEQDAPRPLKHIGKAIKA-SKEEVEQNVRSRSAI 300

Query: 311 LRAGMRTV 318
           +R   + +
Sbjct: 301 MRVAEKRI 308


>gi|332768872|gb|EGJ99051.1| S-adenosyl-methyltransferase MraW [Shigella flexneri 2930-71]
          Length = 312

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 125/311 (40%), Positives = 187/311 (60%), Gaps = 19/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN  P  + +D TFG GG+SR    ++G    ++A+DRDP A++  + 
Sbjct: 6   HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK- 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           T+ D +  FS+    FS L +YV ++     +DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 65  TIDDPR--FSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 122

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G SA++ +  A   D+  +L   GEE  A RIA AIV+R +  P   T++L
Sbjct: 123 LDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEEHFAKRIARAIVERNREQPMTRTKEL 182

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L ++SFH
Sbjct: 183 AEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISFH 241

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306
           SLEDR+VK+F    SR  +V A   M             +++ K  ++P +E+VA N R+
Sbjct: 242 SLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGK--LMPGEEEVAENPRA 299

Query: 307 RSAKLRAGMRT 317
           RS+ LR   RT
Sbjct: 300 RSSVLRIAERT 310


>gi|260767165|ref|ZP_05876108.1| S-adenosyl-methyltransferase MraW [Vibrio furnissii CIP 102972]
 gi|260617839|gb|EEX43015.1| S-adenosyl-methyltransferase MraW [Vibrio furnissii CIP 102972]
          Length = 316

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 127/309 (41%), Positives = 177/309 (57%), Gaps = 20/309 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H+ VLL + I  L   P  + +D TFG GG+SR+   ++G N  + ++DRDP A++  Q+
Sbjct: 7   HISVLLHESIDGLAIKPDGIYIDGTFGRGGHSRTILSQLGPNGRLYSIDRDPQAIAEAQK 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  +F++    FS + +Y         VDGV+FDLGVSS Q+D  +RGFSF K GP
Sbjct: 67  I---DDPRFTIVHGPFSGIAEYAARYELVGKVDGVLFDLGVSSPQLDDAERGFSFMKDGP 123

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---PFQTT 188
           LDMRM   SG+  SD + QA++ D+T ++   GE+K A RIA AIV  R++    P   T
Sbjct: 124 LDMRMDPTSGMPVSDWLAQADLDDITWVIREFGEDKHARRIAKAIVAYRENEENEPLTRT 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ LI      S   + HPATR+FQA RI++N+E+EE+   L+ A   L   G L V+
Sbjct: 184 SQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAASILAPQGRLSVI 243

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSN-----AHPAVFQSITKKVVVPTQEDVAFN 303
           SFHSLEDR+VK+F    S K   V H IP       A  +       K + P++ +VA N
Sbjct: 244 SFHSLEDRMVKRFMRKES-KGPEVPHGIPLTQEQIRALGSADLKTVGKAIKPSEHEVAMN 302

Query: 304 RRSRSAKLR 312
            RSRS+ LR
Sbjct: 303 PRSRSSVLR 311


>gi|84625268|ref|YP_452640.1| S-adenosyl-methyltransferase MraW [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|188575290|ref|YP_001912219.1| S-adenosyl-methyltransferase MraW [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|84369208|dbj|BAE70366.1| cell division protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188519742|gb|ACD57687.1| S-adenosyl-methyltransferase MraW [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 347

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 125/299 (41%), Positives = 175/299 (58%), Gaps = 11/299 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HVPVL  +V+  L        LD TFG GG++R   +    G  ++ +D+DP A++  ++
Sbjct: 18  HVPVLYTQVLDGLQVTENGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDPDAIAVAEQ 77

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
           T      + S+ + +F+ L   V    VDG++ DLGVSS Q+D   RGFSF K GPLDMR
Sbjct: 78  TF-GGDARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLDVAGRGFSFGKDGPLDMR 136

Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M   SG SA+  + QA  +++  +L   GEE+Q+ RIA AIV RR   P   T  L+ LI
Sbjct: 137 MDPDSGQSAAQWLAQATDREIADVLWAYGEERQSRRIARAIVARRAEQPLLRTAQLADLI 196

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
             +V    +++ HPATRSFQA+RI++N E+++L  GL +A  ALK GG L V+SFHSLED
Sbjct: 197 -ASVMPRGDSKTHPATRSFQAIRIYINRELDDLETGLDAALAALKPGGRLAVISFHSLED 255

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           R+VK+F A R  K       +P  A P V   Q ++  +     E +  N R+RSA LR
Sbjct: 256 RIVKQFMA-RYAKAPPSNRRLP-EAQPFVPTLQLVSGAIKADDTE-LNVNPRARSAVLR 311


>gi|218687959|ref|YP_002396171.1| S-adenosyl-methyltransferase MraW [Escherichia coli ED1a]
 gi|263446439|sp|B7MNU1|RSMH_ECO81 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|218425523|emb|CAR06306.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Escherichia coli ED1a]
          Length = 313

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 125/311 (40%), Positives = 187/311 (60%), Gaps = 19/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN  P    +D TFG GG+SR    ++G    ++A+DRDP A++  + 
Sbjct: 7   HTTVLLDEAVNGLNIRPDGTYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           T+ D +  FS+    FS L +YV ++     +DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 66  TIDDPR--FSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   T++L
Sbjct: 124 LDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKEL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L ++SFH
Sbjct: 184 AEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISFH 242

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306
           SLEDR+VK+F    SR  +V A   M             +++ K  ++P +E+VA N R+
Sbjct: 243 SLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGK--LMPGEEEVAENPRA 300

Query: 307 RSAKLRAGMRT 317
           RS+ LR   RT
Sbjct: 301 RSSVLRIAERT 311


>gi|254238917|ref|ZP_04932240.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|126170848|gb|EAZ56359.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
          Length = 313

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 124/305 (40%), Positives = 185/305 (60%), Gaps = 16/305 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQE 76
           H+ VLLE+ ++ L P      LD TFG GG+SR+  +    G  ++  D+DP A+  G+ 
Sbjct: 7   HITVLLEEAVSALAPREDGCYLDGTFGRGGHSRALLEKLGAGGRLLGFDKDPQAIQTGK- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            +     +F + Q +F++L D V  +G    VDGV+ DLGVSS Q+D  +RGFSF   GP
Sbjct: 66  ALAAEDGRFVIVQRSFAELGDEVRARGLEGRVDGVLLDLGVSSPQLDDPERGFSFLNDGP 125

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+   GISA++ +  A  +++ R+    GEE+ A R+A AIV+RRQ  PF+ T DL
Sbjct: 126 LDMRMNPGQGISAAEFIANAAEEEIARVFKEYGEERFAKRMARAIVQRRQERPFERTADL 185

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + +I       +  + +PATR+FQ LRI VNNE+ +L +GL +A ++L  GG L+V+SFH
Sbjct: 186 AEVITVANPAWEKGK-NPATRAFQGLRIHVNNELGDLERGLDAALESLAVGGRLVVISFH 244

Query: 252 SLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVP---TQEDVAFNRRSR 307
           SLEDR+VK F    + G+   +   +P  +   VF+   K +  P   ++E++  N RSR
Sbjct: 245 SLEDRIVKLFMRKHAKGEADNLPRDLPIRSK--VFEPRLKLLGKPQYASEEELKANPRSR 302

Query: 308 SAKLR 312
           SA +R
Sbjct: 303 SAVMR 307


>gi|21230192|ref|NP_636109.1| S-adenosyl-methyltransferase MraW [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|188993033|ref|YP_001905043.1| S-adenosyl-methyltransferase MraW [Xanthomonas campestris pv.
           campestris str. B100]
 gi|24212033|sp|Q8PCK7|RSMH_XANCP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263504525|sp|B0RVB2|RSMH_XANCB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|21111730|gb|AAM40033.1| cell division protein [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|167734793|emb|CAP53003.1| S-adenosyl-methyltransferase [Xanthomonas campestris pv.
           campestris]
          Length = 342

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 132/326 (40%), Positives = 180/326 (55%), Gaps = 15/326 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HVPVL  +V+  L        LD TFG GG++R   +    G  ++ +D+DP A++  + 
Sbjct: 8   HVPVLYTQVLEGLQVTENGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDPEAIAVAEH 67

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
           T      + S+ + +F+ L   V    VDG++ DLGVSS Q+D   RGFSF K GPLDMR
Sbjct: 68  TF-GGDARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLDVAGRGFSFGKDGPLDMR 126

Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M   SG SA+  + QA  +++  +L   GEE+Q+ RIA AIV RR   P   T  L+ LI
Sbjct: 127 MDPDSGQSAAGWLAQATDREIADVLWTYGEERQSRRIARAIVARRGEQPLLRTAQLADLI 186

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
             +V    +++ HPATRSFQA+RI +N E+ +L  GL +A  ALK GG L V+SFHSLED
Sbjct: 187 -ASVMPRGDSKTHPATRSFQAIRIHINRELADLEAGLDAALGALKPGGRLAVISFHSLED 245

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           R+VK+F A R  K       +P  A P V   Q ++  +     E +A N R+RSA LR 
Sbjct: 246 RIVKQFMA-RYAKAPPSNRRLP-EAQPFVPTLQLVSGAIKADDSE-LAVNPRARSAVLRV 302

Query: 314 ----GMRTVERSIEDDSFVHLPRLPT 335
               GM   E  +         R PT
Sbjct: 303 AEKLGMENRESGMGKGHGAAASRFPT 328


>gi|323171245|gb|EFZ56893.1| S-adenosyl-methyltransferase MraW [Escherichia coli LT-68]
          Length = 313

 Score =  204 bits (520), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 124/311 (39%), Positives = 188/311 (60%), Gaps = 19/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN  P  + +D TFG GG+SR    ++G    ++A+DRDP A++  + 
Sbjct: 7   HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           T+ D +  FS+    FS L +YV ++     +DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 66  TIDDPR--FSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   T++L
Sbjct: 124 LDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKEL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L ++SFH
Sbjct: 184 AEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISFH 242

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306
           SLEDR+VK+F    SR  +V A   M             +++ K  ++P +E++A N R+
Sbjct: 243 SLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGK--LMPGEEEMAENPRA 300

Query: 307 RSAKLRAGMRT 317
           RS+ LR   RT
Sbjct: 301 RSSVLRIAERT 311


>gi|238898853|ref|YP_002924535.1| S-adenosyl-dependent methyl transferase [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
 gi|263456095|sp|C4K744|RSMH_HAMD5 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|229466613|gb|ACQ68387.1| S-adenosyl-dependent methyl transferase [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
          Length = 311

 Score =  204 bits (520), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 126/308 (40%), Positives = 190/308 (61%), Gaps = 15/308 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL + +  LN     + +DATFG GG+S     ++GS   +I++DRDP AV   + 
Sbjct: 6   HKTVLLYEAVDSLNIQNDGIYIDATFGRGGHSSLILSRLGSQGKLISIDRDPEAVKKAK- 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            M+D   +FS  Q +FS L  YV        ++G++FDLGVSS Q+D   RGFSF + GP
Sbjct: 65  LMKD--PRFSFIQGSFSDLYHYVKKLDLMGRINGLLFDLGVSSPQLDDAKRGFSFMRDGP 122

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G+SA++ + + NV++L  +L   GEE+ ++R+A AIV+R +  P ++T++L
Sbjct: 123 LDMRMDPSRGLSAAEWLMKVNVENLAWVLKNFGEERFSTRLARAIVERNRLNPIKSTKEL 182

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI   +   +N+  HPATRSFQA+RI++NNE++E++  L +A + L  G  L VVSFH
Sbjct: 183 ADLISHVIPV-RNHHKHPATRSFQAIRIYINNELQEISSALNAALEILSLGARLSVVSFH 241

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKV--VVPTQEDVAFNRRSRS 308
           SLEDR+VK F    S     +R +  +     +++Q   K +   +P+Q++V  N RSRS
Sbjct: 242 SLEDRIVKNFIRQHSRGPQILRGLPLTEIQIQSMWQPKLKLIGKTMPSQKEVLDNPRSRS 301

Query: 309 AKLRAGMR 316
           + LR   R
Sbjct: 302 SILRFAER 309


>gi|239940578|ref|ZP_04692515.1| putative S-adenosylmethionine-dependent methyltransferase
           [Streptomyces roseosporus NRRL 15998]
 gi|239987061|ref|ZP_04707725.1| putative S-adenosylmethionine-dependent methyltransferase
           [Streptomyces roseosporus NRRL 11379]
 gi|291444013|ref|ZP_06583403.1| S-adenosylmethionine-dependent methyltransferase [Streptomyces
           roseosporus NRRL 15998]
 gi|291346960|gb|EFE73864.1| S-adenosylmethionine-dependent methyltransferase [Streptomyces
           roseosporus NRRL 15998]
          Length = 313

 Score =  204 bits (520), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 123/311 (39%), Positives = 182/311 (58%), Gaps = 15/311 (4%)

Query: 23  VLLEKVIALLNPA------PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74
           ++L++ + LL PA      P  V++D T G GG+S +       + +IALDRD  A+   
Sbjct: 1   MMLQRCLDLLAPALQDPAHPDPVVVDCTLGLGGHSEALLAAFPTARLIALDRDKEALRLS 60

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            E +  Y ++ +L  A + +L + +   G   V GV+FDLGVSSMQ+D  DRGF++ +  
Sbjct: 61  GERLAPYGDRATLVHAVYDELPEVLERLGIPKVQGVLFDLGVSSMQLDEADRGFAYAQDA 120

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  S G+ A++V+N     +L RIL   GEEKQA RI  AIV+ R+  PF  +  
Sbjct: 121 PLDMRMDQSTGMGAAEVLNTYPPGELVRILRAYGEEKQAKRIVSAIVREREKEPFSNSAR 180

Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  LI+  +   +K    +PA R+FQALRI VN E+  L + + +A  +L  GG + V+S
Sbjct: 181 LVELIRDALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVDSLAVGGRIAVLS 240

Query: 250 FHSLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           +HSLEDRLVK+ FA+ +         ++P    P + Q +T+   +PT+E+VA NRR+  
Sbjct: 241 YHSLEDRLVKQVFAAGAANTAPPGLPVVPERYQPRLKQ-LTRGAELPTEEEVAENRRAAP 299

Query: 309 AKLRAGMRTVE 319
           A+LR   R  E
Sbjct: 300 ARLRGAQRIRE 310


>gi|24111527|ref|NP_706037.1| S-adenosyl-methyltransferase MraW [Shigella flexneri 2a str. 301]
 gi|30061649|ref|NP_835820.1| S-adenosyl-methyltransferase MraW [Shigella flexneri 2a str. 2457T]
 gi|42559469|sp|Q83SN7|RSMH_SHIFL RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|24050285|gb|AAN41744.1| putative apolipoprotein [Shigella flexneri 2a str. 301]
 gi|30039891|gb|AAP15625.1| putative apolipoprotein [Shigella flexneri 2a str. 2457T]
 gi|281599444|gb|ADA72428.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Shigella
           flexneri 2002017]
 gi|313646535|gb|EFS10996.1| S-adenosyl-methyltransferase MraW [Shigella flexneri 2a str. 2457T]
 gi|332762256|gb|EGJ92523.1| S-adenosyl-methyltransferase MraW [Shigella flexneri 2747-71]
 gi|332762643|gb|EGJ92908.1| S-adenosyl-methyltransferase MraW [Shigella flexneri 4343-70]
 gi|332764928|gb|EGJ95156.1| S-adenosyl-methyltransferase MraW [Shigella flexneri K-671]
 gi|333009116|gb|EGK28572.1| S-adenosyl-methyltransferase MraW [Shigella flexneri K-218]
 gi|333022474|gb|EGK41712.1| S-adenosyl-methyltransferase MraW [Shigella flexneri K-304]
          Length = 313

 Score =  204 bits (520), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 125/311 (40%), Positives = 187/311 (60%), Gaps = 19/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN  P  + +D TFG GG+SR    ++G    ++A+DRDP A++  + 
Sbjct: 7   HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           T+ D +  FS+    FS L +YV ++     +DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 66  TIDDPR--FSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G SA++ +  A   D+  +L   GEE  A RIA AIV+R +  P   T++L
Sbjct: 124 LDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEEHFAKRIARAIVERNREQPMTRTKEL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L ++SFH
Sbjct: 184 AEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISFH 242

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306
           SLEDR+VK+F    SR  +V A   M             +++ K  ++P +E+VA N R+
Sbjct: 243 SLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGK--LMPGEEEVAENPRA 300

Query: 307 RSAKLRAGMRT 317
           RS+ LR   RT
Sbjct: 301 RSSVLRIAERT 311


>gi|311280938|ref|YP_003943169.1| S-adenosyl-methyltransferase MraW [Enterobacter cloacae SCF1]
 gi|308750133|gb|ADO49885.1| S-adenosyl-methyltransferase MraW [Enterobacter cloacae SCF1]
          Length = 313

 Score =  204 bits (520), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 124/311 (39%), Positives = 186/311 (59%), Gaps = 19/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN  P  + +D TFG GG+SR    ++G+   ++A+DRDP A +    
Sbjct: 7   HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGAEGRLLAIDRDPEATAVAN- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           T+ D +  FS+    FS L DY  ++     +DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 66  TIDDPR--FSIVHGPFSALADYAAERSLTGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G SA++ +  A+  D+  ++   GEE+   RIA AIV+R +  P   T++L
Sbjct: 124 LDMRMDPTRGQSAAEWLQTADEADIAWVIKTFGEERFGKRIARAIVERNRIEPMTRTKEL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + +I       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L ++SFH
Sbjct: 184 AEVIAAATPV-KDKHKHPATRTFQAVRIWVNSELEEIEQALKSSLDVLAPGGRLSIISFH 242

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306
           SLEDR+VK+F    SR  +V A   M             +++ K  ++P +E+VA N R+
Sbjct: 243 SLEDRIVKRFMREQSRGPQVPAGLPMTEEQLRKLGGRQLRALGK--LMPGEEEVAENPRA 300

Query: 307 RSAKLRAGMRT 317
           RS+ LR   RT
Sbjct: 301 RSSVLRIAERT 311


>gi|323497887|ref|ZP_08102896.1| 16S rRNA m(4)C1402 methyltranserfase [Vibrio sinaloensis DSM 21326]
 gi|323316932|gb|EGA69934.1| 16S rRNA m(4)C1402 methyltranserfase [Vibrio sinaloensis DSM 21326]
          Length = 316

 Score =  204 bits (520), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 128/315 (40%), Positives = 178/315 (56%), Gaps = 32/315 (10%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H+ VLL + I  L   P  + +D TFG GG+SR+   K+G N  + ++DRDP A++   E
Sbjct: 7   HISVLLHESIDGLAIKPDGIYIDGTFGRGGHSRTILSKLGENGRLYSIDRDPQAIA---E 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +    +F++    FS + DY  D      VDGV+ DLGVSS Q+D  +RGFSF K GP
Sbjct: 64  ANKIDDPRFTIIHGPFSGMADYAKDYDLVGKVDGVLLDLGVSSPQLDDAERGFSFMKDGP 123

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---PFQTT 188
           LDMRM   SGI  S  + +A++ D+T ++   GE+K A RIA AIV  R++    P   T
Sbjct: 124 LDMRMDPTSGIPVSQWLLEADLDDITWVIREFGEDKHARRIAKAIVAYRENEENEPLTRT 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ LI +    S   + HPATR+FQA RI++N+E+EE+   L+ A   L   G L V+
Sbjct: 184 GQLAKLISEAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAASILAPEGRLSVI 243

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIP-----------SNAHPAVFQSITKKVVVPTQ 297
           SFHSLEDR+VK+F    S K   V H IP           +N  P        K + P++
Sbjct: 244 SFHSLEDRMVKRFIRKES-KGPEVPHGIPLTEDQIKAMGSANLKP------VGKAIKPSK 296

Query: 298 EDVAFNRRSRSAKLR 312
           ++V  N RSRS+ LR
Sbjct: 297 QEVEMNARSRSSVLR 311


>gi|28571637|ref|NP_788632.1| CG14683, isoform A [Drosophila melanogaster]
 gi|62472493|ref|NP_001014615.1| CG14683, isoform B [Drosophila melanogaster]
 gi|74869026|sp|Q9VGY5|MET15_DROME RecName: Full=Probable methyltransferase-like protein 15 homolog
 gi|15291185|gb|AAK92861.1| GH10770p [Drosophila melanogaster]
 gi|28381233|gb|AAO41540.1| CG14683, isoform A [Drosophila melanogaster]
 gi|61679326|gb|AAX52945.1| CG14683, isoform B [Drosophila melanogaster]
 gi|220945126|gb|ACL85106.1| CG14683-PA [synthetic construct]
 gi|220954938|gb|ACL90012.1| CG14683-PA [synthetic construct]
          Length = 356

 Score =  204 bits (520), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 130/341 (38%), Positives = 192/341 (56%), Gaps = 37/341 (10%)

Query: 11  SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDP 68
           S+I  T   HVPVL +  I  L P PG    D TFGAGG++R   +    + V ALDRDP
Sbjct: 18  SSIDVTTAPHVPVLCDTAIEYLQPVPGGTYFDMTFGAGGHTRRLLEKCPEAKVYALDRDP 77

Query: 69  FAVSCGQETMR--DYKEQFSLFQATFSQLQDYVPDKG-----VDGVVFDLGVSSMQIDCG 121
            A    ++     ++K +       FS L     + G     VDG++FD G SSMQ D  
Sbjct: 78  LAHQLARDMSESEEFKGRLIPLLGKFSDLPKLFKEHGLAKNSVDGMLFDFGCSSMQFDEA 137

Query: 122 DRGFSFQKSGPLDMRMS---CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178
            RGFS  + GPLDMRM      G++A+DV+      DL +IL + GEEK A +IA  +V 
Sbjct: 138 VRGFSISRDGPLDMRMDGGHSGGVTAADVLANVEEGDLVKILRMYGEEKAAKKIARGLVD 197

Query: 179 RRQSA-PFQTTQDLSSLIQKTV-YFSKNNRI----HPATRSFQALRIFVNNEIEELAQGL 232
            R +    +TT+ L+ +I+  +   ++ +++    H AT++FQA+RIFVNNE+ E+  G+
Sbjct: 198 ARNALFKIETTKQLADIIENIMDGGTRKDKLRRPAHSATKTFQAIRIFVNNELNEINYGM 257

Query: 233 RSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMA-VRHMIP--SNAH-----PAV 284
             A + L+  G L+ ++FHSLED +VK+     +G V+A   + +P   ++H     P +
Sbjct: 258 VLANEILRVDGRLVTITFHSLEDTIVKRHI---NGNVLAGAANALPLKYSSHYAIDEPDI 314

Query: 285 FQSITKK--------VVVPTQEDVAFNRRSRSAKLRAGMRT 317
            +S+TKK        V+VP  ++VA N RSRSAKLRA ++T
Sbjct: 315 LESLTKKSWKQLHRHVIVPDADEVARNTRSRSAKLRAAVKT 355


>gi|194434429|ref|ZP_03066691.1| S-adenosyl-methyltransferase MraW [Shigella dysenteriae 1012]
 gi|194417345|gb|EDX33452.1| S-adenosyl-methyltransferase MraW [Shigella dysenteriae 1012]
 gi|332098043|gb|EGJ03016.1| S-adenosyl-methyltransferase MraW [Shigella dysenteriae 155-74]
          Length = 313

 Score =  204 bits (520), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 124/311 (39%), Positives = 187/311 (60%), Gaps = 19/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN  P  + +D TFG GG+SR    ++G    ++A+DRDP A++  + 
Sbjct: 7   HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           T+ D +  FS+    FS L +YV ++     +DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 66  TIDDPR--FSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   T++L
Sbjct: 124 LDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKEL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L ++SFH
Sbjct: 184 AEVVAAATSV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISFH 242

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306
           SLEDR+VK+F    SR  +V     M             +++ K  ++P +E+VA N R+
Sbjct: 243 SLEDRIVKRFMRENSRGPQVPVGLPMTEEQLKKLGGRQLRALGK--LMPGEEEVAENPRA 300

Query: 307 RSAKLRAGMRT 317
           RS+ LR   RT
Sbjct: 301 RSSVLRIAERT 311


>gi|218961102|ref|YP_001740877.1| S-adenosyl-methyltransferase MraW [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729759|emb|CAO80671.1| S-adenosyl-methyltransferase MraW [Candidatus Cloacamonas
           acidaminovorans]
          Length = 327

 Score =  204 bits (520), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 121/304 (39%), Positives = 174/304 (57%), Gaps = 10/304 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           H PV++++ ++ LN   G + +DAT G GG+S +  K    +     D+D  A+    + 
Sbjct: 4   HTPVMVKECLSYLNLRAGYIYVDATTGGGGHSLAMLKAQPEIKLYCFDQDSEAIEEAGKI 63

Query: 78  MRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           + +Y     L QA F QL+    Y   KG+DG++FDLGVSS Q++C +RGFSF+K  PLD
Sbjct: 64  LHNYN-NVELIQANFKQLRTELAYRKIKGIDGILFDLGVSSHQLECTERGFSFEKDAPLD 122

Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM  +   SA + VN+ + K LT I    GEE+ A RIA AI K   S P +TT++L+ 
Sbjct: 123 MRMDKNLKNSAYNAVNELDTKTLTNIFREYGEEQNAYRIAKAIEK--SSKPIKTTRELAK 180

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           +++          +    R FQALRI+VN E+E L+  L+ A   L   G ++V+S+HSL
Sbjct: 181 IVESIAGKGTKASLKTKVRVFQALRIYVNKELESLSLALQDAINLLNPQGRIVVISYHSL 240

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNA-HPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           EDR+VK+ F     K      +  SN  H      +TKK V  T+E++  N RSRSAKLR
Sbjct: 241 EDRIVKQTFKKAEQKNEEQSVLPNSNKNHQQQLIILTKKPVTATEEEILVNPRSRSAKLR 300

Query: 313 AGMR 316
           AG +
Sbjct: 301 AGEK 304


>gi|289578681|ref|YP_003477308.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter italicus Ab9]
 gi|289528394|gb|ADD02746.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter italicus Ab9]
          Length = 308

 Score =  204 bits (520), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 118/304 (38%), Positives = 173/304 (56%), Gaps = 8/304 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77
           H  VLL++ I  LN  P  + +D T G GG+S    K      +IA+DRD  A+  G+E 
Sbjct: 5   HKSVLLKETIEYLNIKPEGIYVDGTLGGGGHSEEILKRLTKGKLIAIDRDLDAIKAGKER 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +++YK         F  +++ +   GVD   G++ DLGVSS Q++  +RGFS+ K  PLD
Sbjct: 65  LKNYK-NVKYINNNFKNIKEILKSLGVDKVDGIILDLGVSSFQLEEVERGFSYMKDAPLD 123

Query: 135 MRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM   S  SA DVVN+ + ++L +++   GEEK ASRIA  IVK R+    +TT  L  
Sbjct: 124 MRMDKNSTFSAYDVVNKYSQQELEKVIREYGEEKWASRIAKFIVKEREKGEIKTTFQLVE 183

Query: 194 LIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +I+  +  S   +  HPA R+FQA+RI VN E++ L + +    + L+  G + +++FHS
Sbjct: 184 IIKNAIPASARRKGPHPAKRTFQAIRIEVNEELKGLGKAIEDMVEVLRGKGRIAIITFHS 243

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK  F           +M        V + ITKK VVP++E++  N RSRSAKLR
Sbjct: 244 LEDRIVKNTFKKLENPCTCPPNMPCICGKKPVVKIITKKPVVPSKEEIETNSRSRSAKLR 303

Query: 313 AGMR 316
              +
Sbjct: 304 VAEK 307


>gi|227327098|ref|ZP_03831122.1| S-adenosyl-methyltransferase MraW [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 314

 Score =  204 bits (520), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 124/309 (40%), Positives = 186/309 (60%), Gaps = 16/309 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN   G + +D TFG GG+SR    ++G    ++A+DRDP A+   + 
Sbjct: 7   HTTVLLDEAVNGLNIRSGGIYIDGTFGRGGHSRLILSQLGPEGRLLAIDRDPQAIEAAR- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            + D +  FS+    FS + +YV + G    +DGV+ DLGVSS Q+D  +RGFSF + GP
Sbjct: 66  AIDDPR--FSIIHGPFSAMAEYVAELGLTGQIDGVLLDLGVSSPQLDDPERGFSFMRDGP 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G+SA++ + +A   D+  +L   GEE+ A RIA AIV+R +  P   T++L
Sbjct: 124 LDMRMDPTRGLSAAEWLMKAEADDIVWVLKTFGEERFAKRIARAIVERNRLDPMTRTKEL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI       + ++ HPATRSFQA+RI++N+E+EE+ + L  A   L   G L V+SFH
Sbjct: 184 AELIAAASPIREKHK-HPATRSFQAIRIYINSELEEIERALEGALSVLAPQGRLSVISFH 242

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSI--TKKVVVPTQEDVAFNRRSR 307
           SLEDR+VK+F    SR  +V A   +          Q++    K ++P++E+VA N R+R
Sbjct: 243 SLEDRIVKRFIRHQSRGPQVPAGLPLTEEQLRSQGGQTLKAVGKKLMPSEEEVAENPRAR 302

Query: 308 SAKLRAGMR 316
           S+ LR   R
Sbjct: 303 SSVLRFAER 311


>gi|218893511|ref|YP_002442380.1| S-adenosyl-methyltransferase MraW [Pseudomonas aeruginosa LESB58]
 gi|262825031|sp|B7UZJ8|RSMH_PSEA8 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|218773739|emb|CAW29553.1| putative methyltransferase [Pseudomonas aeruginosa LESB58]
          Length = 313

 Score =  204 bits (519), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 123/305 (40%), Positives = 185/305 (60%), Gaps = 16/305 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQE 76
           H+ VLLE+ ++ L P      LD TFG GG+SR+  +    G  ++  D+DP A+  G+ 
Sbjct: 7   HITVLLEEAVSALAPREDGCYLDGTFGRGGHSRALLEKLGAGGRLLGFDKDPQAIQTGK- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            +     +F + Q +F++L D V  +G    +DGV+ DLGVSS Q+D  +RGFSF   GP
Sbjct: 66  ALAAEDGRFVIVQRSFAELGDEVRARGLEGRIDGVLLDLGVSSPQLDDPERGFSFLNDGP 125

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+   GISA++ +  A  +++ R+    GEE+ A R+A AIV+RRQ  PF+ T DL
Sbjct: 126 LDMRMNPGQGISAAEFIANAAEEEIARVFKEYGEERFAKRMARAIVQRRQERPFERTADL 185

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + +I       +  + +PATR+FQ LRI VNNE+ +L +GL +A ++L  GG L+V+SFH
Sbjct: 186 AEVITVANPAWEKGK-NPATRAFQGLRIHVNNELGDLERGLDAALESLAVGGRLVVISFH 244

Query: 252 SLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVP---TQEDVAFNRRSR 307
           SLEDR+VK F    + G+   +   +P  +   VF+   K +  P   ++E++  N RSR
Sbjct: 245 SLEDRIVKLFMRKHAKGEADNLPRDLPIRSK--VFEPRLKLLGKPQYASEEELKANPRSR 302

Query: 308 SAKLR 312
           SA +R
Sbjct: 303 SAVMR 307


>gi|26246015|ref|NP_752054.1| S-adenosyl-methyltransferase MraW [Escherichia coli CFT073]
 gi|300981119|ref|ZP_07175365.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 45-1]
 gi|30173069|sp|Q8FL68|RSMH_ECOL6 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|26106412|gb|AAN78598.1|AE016755_98 S-adenosyl-methyltransferase mraW [Escherichia coli CFT073]
 gi|300409021|gb|EFJ92559.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 45-1]
 gi|315294723|gb|EFU54066.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 153-1]
          Length = 313

 Score =  204 bits (519), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 125/311 (40%), Positives = 187/311 (60%), Gaps = 19/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN  P  + +D TFG GG+SR    ++G    ++A+DRDP A++  + 
Sbjct: 7   HFTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           T+ D +  FS+    FS L +YV D+     +DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 66  TIDDPR--FSIIHGPFSALGEYVADRDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G SA++ +  A   D+  +L   GEE+ A RIA AIV+  +  P   T++L
Sbjct: 124 LDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVEHNREQPMTRTKEL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L ++SFH
Sbjct: 184 AEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLHVLAPGGRLSIISFH 242

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306
           SLEDR+VK+F    SR  +V A   M             +++ K  ++P +E+VA N R+
Sbjct: 243 SLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGK--LMPGEEEVAENPRA 300

Query: 307 RSAKLRAGMRT 317
           RS+ LR   RT
Sbjct: 301 RSSVLRIAERT 311


>gi|255101826|ref|ZP_05330803.1| S-adenosyl-methyltransferase [Clostridium difficile QCD-63q42]
 gi|255307693|ref|ZP_05351864.1| S-adenosyl-methyltransferase [Clostridium difficile ATCC 43255]
          Length = 311

 Score =  204 bits (519), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 118/308 (38%), Positives = 176/308 (57%), Gaps = 13/308 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           HV VLL + I  LN  P  V +D T G  G+S+   K  S+    I  D+D  A+S  +E
Sbjct: 5   HVSVLLNECIENLNIKPDGVYVDCTMGGAGHSKEIVKKLSDKGLFIGFDQDKNAISTAKE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + +Y+ +     + F  +++ +   GV   DGV+ DLGVSS Q+D  DRGFS+ +  PL
Sbjct: 65  RLSEYESRVKFVHSNFENIKEELEKIGVYKIDGVLADLGVSSHQLDEADRGFSYMQDAPL 124

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM      SA DVVN     +LT+I+   GE+  A RIA  IV+ R + P +TT +L 
Sbjct: 125 DMRMDVRCEFSAYDVVNTYTEDELTKIIKDYGEDNWAKRIAKFIVEERANKPIETTGELV 184

Query: 193 SLIQKTVYFSKNNRI---HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            +I+K +   K  RI   HPA R+FQA+RI VNNE+  + + +  A   +  GG + +++
Sbjct: 185 DVIKKAI--PKKARIDGPHPAKRTFQAIRIEVNNELGVITKMINDASSIMNEGGRICIIT 242

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK  F   +   +  +H+ I      +  + IT+K ++P++E++  N RSRS
Sbjct: 243 FHSLEDRIVKNAFKHLASDCICPQHLPICQCDKESEVKIITRKPILPSEEEIEVNPRSRS 302

Query: 309 AKLRAGMR 316
           AKLR   +
Sbjct: 303 AKLRVAEK 310


>gi|20139121|sp|Q9AJG9|RSMH_VIBPR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|13537266|dbj|BAB40618.1| hypothetical protein [Vibrio proteolyticus]
          Length = 316

 Score =  204 bits (519), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 126/311 (40%), Positives = 182/311 (58%), Gaps = 24/311 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H+ VLL + I  L   P  + +D TFG GG+SR+   ++G N  + ++DRDP A++  + 
Sbjct: 7   HISVLLHESIEGLAIKPDGIYIDGTFGRGGHSRTILSQLGENGRLYSIDRDPQAIAEAK- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           T+ D +  F++    FS +  Y    G    VDGV+FDLGVSS Q+D  +RGFSF K GP
Sbjct: 66  TIDDPR--FTIVHGPFSGIAHYAKQHGLAGKVDGVLFDLGVSSPQLDDAERGFSFMKDGP 123

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---PFQTT 188
           LDMRM   SGI  S  + +A++ D+T ++   GE+K A RIA AIV  R++    P + T
Sbjct: 124 LDMRMDPTSGIPVSQWLMEADLDDITWVIREFGEDKHARRIAKAIVAYRENEENEPLKRT 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ LI      S   + HPATR+FQA RI++N+E+EE+   L+ A + L   G L V+
Sbjct: 184 SQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAAEILAPQGRLSVI 243

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK-------KVVVPTQEDVA 301
           SFHSLEDR+VK+F    S +   V H IP     A  Q++         K + P+++++ 
Sbjct: 244 SFHSLEDRMVKRFIRKES-QGPQVPHGIPMTE--AQIQALGSANMKAIGKAIKPSKQEIE 300

Query: 302 FNRRSRSAKLR 312
            N RSRS+ LR
Sbjct: 301 LNPRSRSSVLR 311


>gi|212635034|ref|YP_002311559.1| S-adenosyl-methyltransferase MraW [Shewanella piezotolerans WP3]
 gi|262826550|sp|B8CM48|RSMH_SHEPW RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|212556518|gb|ACJ28972.1| S-adenosyl-methyltransferase mraW [Shewanella piezotolerans WP3]
          Length = 318

 Score =  204 bits (519), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 120/309 (38%), Positives = 180/309 (58%), Gaps = 15/309 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQ 75
           +H+ VLL + +A LN     + +D TFG GG+SR    ++G N  +IA+DRDP A+   +
Sbjct: 6   EHLSVLLTETVAGLNIREDGIYIDGTFGRGGHSRKVLEQLGPNGRLIAIDRDPQAILAAE 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +   D +  F +    F QL  YV + G    +DGV+ D GVSS Q+D  +RGFSF + G
Sbjct: 66  QFKDDSR--FQIVHGGFGQLAQYVEELGLKGKIDGVLLDFGVSSPQLDDAERGFSFLRDG 123

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  S G +A+  + +A ++D+  +    GEEK +  IA  I   R+  PF  T++
Sbjct: 124 PLDMRMDNSQGQTAAQWIARAEIEDMAWVFKTYGEEKNSRHIARCIAADREKTPFLRTKE 183

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ LI +     + N+ HPATR FQA+RI++N+E+E++ Q L  A   L   G L V+SF
Sbjct: 184 LADLIARITKNKERNK-HPATRVFQAIRIYINSELEQIDQALEGALTVLAPEGRLSVISF 242

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIP---SNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           HSLEDR+VK+F   R  +  +V H +P   +  + +       K + P+ E++  N R+R
Sbjct: 243 HSLEDRMVKRFI-RRHSQGESVPHGLPITEAEINKSRKLKGIGKAIKPSAEEIERNARAR 301

Query: 308 SAKLRAGMR 316
           S+ LR G R
Sbjct: 302 SSVLRIGER 310


>gi|325829899|ref|ZP_08163357.1| S-adenosyl-methyltransferase MraW [Eggerthella sp. HGA1]
 gi|325488066|gb|EGC90503.1| S-adenosyl-methyltransferase MraW [Eggerthella sp. HGA1]
          Length = 318

 Score =  204 bits (519), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 120/313 (38%), Positives = 181/313 (57%), Gaps = 18/313 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H PVLL + +   N  P    +DAT G  G+S    K+   G  +I +D+D  A++  + 
Sbjct: 7   HTPVLLAECLEYSNLKPQHTFVDATLGGAGHSFEAAKLIGSGGTLIGIDQDEVALAAARL 66

Query: 77  TM----RDYKEQFSLFQATFSQLQDY-----VPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
            +     D + +  L +  F  + +      VP  GVD V+FDLGVSS+QID   RGFSF
Sbjct: 67  KLGTLPDDVRPRLELVRGNFGNMDEALLSTEVP--GVDAVLFDLGVSSVQIDTPSRGFSF 124

Query: 128 QKSGPLDMRMSCS--GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           +++GPLDMRM      ++A++++N     DLTRI+    +EK ASRIA   V+ RQ+AP 
Sbjct: 125 KENGPLDMRMDPGKQTLTAAEIINTYTAADLTRIIRTYSDEKWASRIADFAVRARQNAPI 184

Query: 186 QTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           +T++ L  +I+  +  S +    HPA R+FQALRI VN E++ L  GL +A + L  GG 
Sbjct: 185 ETSEQLVDIIKAAIPASARRAGGHPAKRTFQALRIEVNGELDVLRSGLDAAIRWLNPGGR 244

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFN 303
           L+V+S+HSLEDR+VK+ FA  + +      + +       +   +T+K V+PT E++  N
Sbjct: 245 LVVISYHSLEDRIVKETFAKFANRCTCPPDLPVCMCGKQPILDIVTRKPVLPTAEEIERN 304

Query: 304 RRSRSAKLRAGMR 316
            R+RSAKLR   +
Sbjct: 305 ARARSAKLRVAQK 317


>gi|317124641|ref|YP_004098753.1| S-adenosyl-methyltransferase MraW [Intrasporangium calvum DSM
           43043]
 gi|315588729|gb|ADU48026.1| S-adenosyl-methyltransferase MraW [Intrasporangium calvum DSM
           43043]
          Length = 371

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 123/306 (40%), Positives = 180/306 (58%), Gaps = 14/306 (4%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74
           HVP++ ++++ LL PA   PG V +D T G GG++        G  VI +DRD  A++  
Sbjct: 11  HVPIMRDRILDLLAPALSTPGAVHVDGTLGMGGHAEGVLSRFPGCRVIGVDRDREALTLA 70

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            E +  + ++F    AT  +L   + D G   VDG+VFDLGVSS+Q+D  DRGF+++   
Sbjct: 71  GERLAGFGDRFLPVHATNDELARVLLDSGLQHVDGIVFDLGVSSLQLDEEDRGFAYRVDA 130

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM    G +A+DV+N  +V+D+TRIL   GEE+ A +IA AIV+ R+  PF T+  
Sbjct: 131 PLDMRMDQTRGQTAADVLNTYSVEDVTRILREYGEERFARKIAVAIVREREDEPFATSGR 190

Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  L+++ +   S+    HPA R+FQALRI VN+E+    + + +A   L  GG + V+S
Sbjct: 191 LVELLRRVIPVASQRQSGHPAKRTFQALRIEVNDELGGWERAVAAAIDVLAVGGRMAVLS 250

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNA--HPAVFQSITKKVVVPTQEDVAFNRRSR 307
           FHSLEDRL K+ FA   G   +    +P     H    +++T+    P   +V  N R+ 
Sbjct: 251 FHSLEDRLTKRAFA--LGATSSAPRGLPVELPHHAPYLRALTRGAEEPDDAEVLANPRAA 308

Query: 308 SAKLRA 313
           SAKLRA
Sbjct: 309 SAKLRA 314


>gi|300741256|ref|ZP_07071277.1| S-adenosyl-methyltransferase MraW [Rothia dentocariosa M567]
 gi|300380441|gb|EFJ77003.1| S-adenosyl-methyltransferase MraW [Rothia dentocariosa M567]
          Length = 359

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 119/305 (39%), Positives = 179/305 (58%), Gaps = 10/305 (3%)

Query: 20  HVPVLLEKVIALLNPAPGK---VILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCG 74
           HVPV+L++ + LL PA  +   V++D T G GG++ +  +  SN  VI +DRD  A +  
Sbjct: 48  HVPVMLDRCLELLEPAISRQDAVVIDGTLGMGGHTEAMLERFSNLTVIGIDRDAQAHAIA 107

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            E +  +  +F      +  ++D +   GV   DGV+ DLGVSSMQ+D   RGF++    
Sbjct: 108 AERLARFGNRFVPVHTVYDHIEDAMSAAGVTSVDGVLLDLGVSSMQLDERSRGFAYSYDA 167

Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+    ++A  VVN+ +   L RI+   GEEK A+RIA  IV++R+  PF TT +
Sbjct: 168 PLDMRMNGDDELTARIVVNEYSENQLRRIIKNWGEEKFAARIAQHIVEQRKHTPFTTTGE 227

Query: 191 LSSLIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L + IQK V  +   +  HPA R+FQALRI VN+E+E L + + +A  AL+ GG  + +S
Sbjct: 228 LVAAIQKAVPAAAQRKGGHPAKRTFQALRIEVNHELEALERAVPAALDALRLGGRFVAMS 287

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           +HSLED++VK+     +         +  + H    + IT+    PT+ ++A N R+ SA
Sbjct: 288 YHSLEDKIVKRALTEAATSKAPKGFPVELDEHQPTIRVITRGAEPPTEAEIAENPRAASA 347

Query: 310 KLRAG 314
           KLRAG
Sbjct: 348 KLRAG 352


>gi|284008372|emb|CBA74773.1| S-adenosyl-methyltransferase [Arsenophonus nasoniae]
          Length = 393

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 124/307 (40%), Positives = 187/307 (60%), Gaps = 17/307 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H+ VLL++ +  LN     + +D TFG GG+S+    ++GS   +IA+DRDP AV+  +E
Sbjct: 84  HISVLLDEAVNGLNIKANGIYVDGTFGRGGHSQLILSRLGSKGRLIAIDRDPHAVAAAEE 143

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            + D   +FS+   +FSQLQ ++  +G    +DGV+ DLGVSS Q+D  +RGFSF + GP
Sbjct: 144 MITD--NRFSIKHGSFSQLQTFIAQEGLVGKIDGVLLDLGVSSPQLDDPERGFSFMRDGP 201

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---PFQTT 188
           LDMRM   +G SA+  + +A+  D+  +L   GEE+ A RIA AIV R   +   P   T
Sbjct: 202 LDMRMDPTTGQSAAQWLMKADEADIAWVLKTYGEERFAKRIAKAIVARNHHSAEEPLTRT 261

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           + L+ LI +   F + ++ HPATRSFQA+RI++N+E+EE+A+ L  +   L   G L ++
Sbjct: 262 KQLAELIAQVSPFKEKHK-HPATRSFQAIRIYINSELEEIAKALEGSLNILAPQGRLSII 320

Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKV--VVPTQEDVAFNRR 305
           SFHSLEDRLVK+F    S G  + V   +      A+   I K +  + PT+ ++  N R
Sbjct: 321 SFHSLEDRLVKRFIREHSRGPKVPVGLPLTDVQLKAIGSPILKVLGKMKPTEREIIENPR 380

Query: 306 SRSAKLR 312
           +RS+ +R
Sbjct: 381 ARSSVVR 387


>gi|160933348|ref|ZP_02080736.1| hypothetical protein CLOLEP_02193 [Clostridium leptum DSM 753]
 gi|156867225|gb|EDO60597.1| hypothetical protein CLOLEP_02193 [Clostridium leptum DSM 753]
          Length = 308

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 122/303 (40%), Positives = 176/303 (58%), Gaps = 7/303 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H+PVLL + I  L   P  V +D T G GG+S +  K  S   +IA+D+DP A++   + 
Sbjct: 5   HLPVLLRETIEGLAVKPDGVYVDGTAGGGGHSEAIAKRLSTGRLIAIDQDPDAIAAVTKR 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           + DY    ++ +A FSQ+++ V   GVD   GV+ D+GVSS Q+D  +RGFS+    PLD
Sbjct: 65  LADYP-GVTVCRANFSQMEEVVRSLGVDSVDGVLMDIGVSSHQLDTPERGFSYHSDAPLD 123

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRMS  G  A D+VN    ++L  IL   GEE+ + RIA  I   R+ AP +TT  L+ +
Sbjct: 124 MRMSQEGPGAGDLVNSLPWQELAEILSRYGEERFSKRIAQGIAAAREQAPIETTFQLAEI 183

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           ++     +     HPA ++FQALRI VN E++ L++GL +A   LK GG L V++FHSLE
Sbjct: 184 VKNAYPAAARRDGHPARKTFQALRIAVNGELDRLSEGLDAAFSLLKPGGRLAVITFHSLE 243

Query: 255 DRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           DRLVK+  AS   G        +         + +T+K V  ++ ++  N RSRSAKLR 
Sbjct: 244 DRLVKRRMASWCQGCTCPPDFPVCVCGKTPSAELVTRKPVKASETELEKNPRSRSAKLRV 303

Query: 314 GMR 316
            +R
Sbjct: 304 CIR 306


>gi|317489854|ref|ZP_07948347.1| MraW methylase [Eggerthella sp. 1_3_56FAA]
 gi|316911009|gb|EFV32625.1| MraW methylase [Eggerthella sp. 1_3_56FAA]
          Length = 318

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 125/319 (39%), Positives = 183/319 (57%), Gaps = 30/319 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H PVLL + +   N  P    +DAT G  G+S    K+   G  +I +D+D  A++  + 
Sbjct: 7   HTPVLLAECLEYSNLKPQHTFVDATLGGAGHSFEAAKLIGSGGTLIGIDQDEVALAAARL 66

Query: 77  TM----RDYKEQFSLFQATFSQLQDY-----VPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
            +     D + +  L +  F  + +      VP  GVD V+FDLGVSS+QID   RGFSF
Sbjct: 67  KLGTLPDDVRPRLELVRGNFGNMDEALLSTEVP--GVDAVLFDLGVSSVQIDTPSRGFSF 124

Query: 128 QKSGPLDMRMSCS--GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           +++GPLDMRM      ++A++++N     DLTRI+    +EK ASRIA   V+ RQ+AP 
Sbjct: 125 KENGPLDMRMDPGKQTLTAAEIINTYTAADLTRIIRTYSDEKWASRIADFAVRARQNAPI 184

Query: 186 QTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           +T++ L  +I+  +  S +    HPA R+FQALRI VN E++ L  GL +A + L  GG 
Sbjct: 185 ETSEQLVDIIKAAIPASARRAGGHPAKRTFQALRIEVNGELDVLRSGLDAAIRWLNPGGR 244

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPA-------VFQSITKKVVVPTQ 297
           L+V+S+HSLEDR+VK+ FA       A R   P +  PA       +   +T+K V+PT 
Sbjct: 245 LVVISYHSLEDRIVKETFAK-----FANRCTCPPDL-PACMCGKQPILDIVTRKPVLPTA 298

Query: 298 EDVAFNRRSRSAKLRAGMR 316
           E++  N R+RSAKLR   +
Sbjct: 299 EEIERNARARSAKLRVAQK 317


>gi|126700272|ref|YP_001089169.1| S-adenosyl-methyltransferase MraW [Clostridium difficile 630]
 gi|123174036|sp|Q182Z2|RSMH_CLOD6 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|115251709|emb|CAJ69544.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Clostridium difficile]
          Length = 311

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 118/308 (38%), Positives = 176/308 (57%), Gaps = 13/308 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           HV VLL + I  LN  P  V +D T G  G+S+   K  S+    I  D+D  A+S  +E
Sbjct: 5   HVSVLLNECIENLNIKPDGVYVDCTMGGAGHSKEIVKKLSDKGLFIGFDQDKNAISTAKE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + +Y+ +     + F  +++ +   GV   DGV+ DLGVSS Q+D  DRGFS+ +  PL
Sbjct: 65  RLSEYESRVKFVHSNFENIKEELEKIGVYKIDGVLADLGVSSHQLDEADRGFSYMQDAPL 124

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM      SA DVVN     +LT+I+   GE+  A RIA  IV+ R + P +TT +L 
Sbjct: 125 DMRMDVRCEFSAYDVVNTYTEDELTKIIKDYGEDNWAKRIAKFIVEERANKPIETTGELV 184

Query: 193 SLIQKTVYFSKNNRI---HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            +I+K +   K  RI   HPA R+FQA+RI VNNE+  + + +  A   +  GG + +++
Sbjct: 185 DVIKKAI--PKKARIVGPHPAKRTFQAIRIEVNNELGVITKMINDASSIMNEGGRICIIT 242

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK  F   +   +  +H+ I      +  + IT+K ++P++E++  N RSRS
Sbjct: 243 FHSLEDRIVKNAFKHLASDCICPQHLPICQCDKESEVKIITRKPILPSEEEIEVNPRSRS 302

Query: 309 AKLRAGMR 316
           AKLR   +
Sbjct: 303 AKLRVAEK 310


>gi|124265647|ref|YP_001019651.1| S-adenosyl-methyltransferase MraW [Methylibium petroleiphilum PM1]
 gi|167011833|sp|A2SCX7|RSMH_METPP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|124258422|gb|ABM93416.1| S-adenosyl-methyltransferase MraW [Methylibium petroleiphilum PM1]
          Length = 318

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 128/307 (41%), Positives = 186/307 (60%), Gaps = 13/307 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76
           H  VLL + +  L  +P    +D T+G GG+SR   S       ++A+DRDP AV+    
Sbjct: 10  HTTVLLHEAVDALVHSPDGYYVDGTYGRGGHSRLILSKLSAAGRLLAIDRDPDAVAHATS 69

Query: 77  -TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              R    +F +  A +S+L   +  +GV   DG++ D+GVSS QID  +RGFSF+ SGP
Sbjct: 70  GAARVTDPRFHIEHAPYSELPALLAARGVSRIDGLLLDIGVSSPQIDNPERGFSFRASGP 129

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA-PFQTTQD 190
           LDMRM  + G SA+D + +A+ +++  ++   GEE+ A+ IA A+V RR +  P +TT++
Sbjct: 130 LDMRMDPTRGESAADYLARADEREIAAVIRDYGEERFATAIARALVARRLAGRPVRTTEE 189

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ L+ + V   +  + +PATR+FQALRIFVN E+ +L QGL +A + LK GG L+V+SF
Sbjct: 190 LAELVAQAVKTREPGQ-NPATRTFQALRIFVNAELTQLEQGLAAALQCLKPGGRLVVISF 248

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDR+VK F AS S  V+  R      A PA  +      + P  ++VA N R+RSA 
Sbjct: 249 HSLEDRIVKTFIASHSKAVVDRRAPF---APPAPMRLRALARLKPGADEVAANPRARSAI 305

Query: 311 LRAGMRT 317
           LR   RT
Sbjct: 306 LRVAERT 312


>gi|311113332|ref|YP_003984554.1| S-adenosyl-methyltransferase MraW [Rothia dentocariosa ATCC 17931]
 gi|310944826|gb|ADP41120.1| S-adenosyl-methyltransferase MraW [Rothia dentocariosa ATCC 17931]
          Length = 364

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 119/305 (39%), Positives = 180/305 (59%), Gaps = 10/305 (3%)

Query: 20  HVPVLLEKVIALLNPAPGK---VILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCG 74
           HVPV+L++ + LL PA  +   V++D T G GG++ +  +  SN  VI +DRD  A +  
Sbjct: 53  HVPVMLDRCLELLEPAISRQDAVVIDGTLGMGGHTEAMLERFSNLTVIGIDRDAQAHAIA 112

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            E +  + ++F      +  ++D +   GV   DGV+ DLGVSSMQ+D   RGF++    
Sbjct: 113 VERLARFGDRFVPVHTVYDHIEDAMSAAGVTSVDGVLLDLGVSSMQLDERSRGFAYSYDA 172

Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+    ++A  VVN+ +   L RI+   GEEK A+RIA  IV++R+  PF TT +
Sbjct: 173 PLDMRMNGDDELTARIVVNEYSENQLRRIIKNWGEEKFAARIAQHIVEQRKHTPFTTTGE 232

Query: 191 LSSLIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L + IQK V  +   +  HPA R+FQALRI VN+E+E L + + +A  AL+ GG  + +S
Sbjct: 233 LVAAIQKAVPAAAQRKGGHPAKRTFQALRIEVNHELEALERAVPAALDALRLGGRFVAMS 292

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           +HSLED++VK+     +         +  + H    + IT+    PT+ ++A N R+ SA
Sbjct: 293 YHSLEDKIVKRALTEAATSKAPKGFPVELDEHQPTIRVITRGAEPPTEAEIAENPRAASA 352

Query: 310 KLRAG 314
           KLRAG
Sbjct: 353 KLRAG 357


>gi|284045229|ref|YP_003395569.1| S-adenosyl-methyltransferase MraW [Conexibacter woesei DSM 14684]
 gi|283949450|gb|ADB52194.1| S-adenosyl-methyltransferase MraW [Conexibacter woesei DSM 14684]
          Length = 314

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 122/312 (39%), Positives = 181/312 (58%), Gaps = 8/312 (2%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMG--SNVIALDRDPFAVSCG 74
           G H+PVL  ++I LL+P PG+V++D T G GG++R    ++G    +I +DRDP A    
Sbjct: 3   GIHIPVLAGELIELLDPQPGQVVVDCTLGGGGHARLVAGRIGPTGTLIGIDRDPIAEERF 62

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGV--DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            E   +        +A F+Q  + +  +GV  D V  DLG+SSMQ+D  +RGFS+    P
Sbjct: 63  AELTAEVSCTTRFIRADFAQGLEQLAREGVQADLVYMDLGMSSMQVDTWERGFSYAYDAP 122

Query: 133 LDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM S   ++A +VVN  + + L R+L   GEE+ AS+IA AI + R+  P +TTQ L
Sbjct: 123 LDMRMDSEQELTAHEVVNGWDERRLARLLKEYGEERYASKIARAIARTREQQPIETTQAL 182

Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+  +   ++    HPA R+FQA+RI VN E+E++  GL  A   L  GG L  +SF
Sbjct: 183 VDVIKSAIPIPAQFGGGHPAKRTFQAIRIAVNEELEQIDDGLPFAWDVLAPGGRLAAISF 242

Query: 251 HSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR VK+F   R+ G +      I +       + +T++ + PT  +VA N R++SA
Sbjct: 243 HSLEDRRVKRFLVDRARGCICPPDLPICACGRTPEGELLTRRAIAPTAGEVAHNPRAKSA 302

Query: 310 KLRAGMRTVERS 321
            LR  ++  E S
Sbjct: 303 HLRGALKLKEMS 314


>gi|156551077|ref|XP_001602807.1| PREDICTED: similar to GA13173-PA [Nasonia vitripennis]
          Length = 426

 Score =  204 bits (518), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 130/327 (39%), Positives = 182/327 (55%), Gaps = 35/327 (10%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           H PV+L++ I  L  +PG  I+D TFGAGG+SR   +   +V   ALDRD  A +  +E 
Sbjct: 97  HTPVMLKETIEYLKLSPGDTIVDMTFGAGGHSRKILESVPHVTIFALDRDEVAHNYAKEL 156

Query: 78  MRDYKEQFSLFQATFSQLQDY-----VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              Y  Q       FS+L        V +  +DG +FD G SSMQ D  +RGF   K+GP
Sbjct: 157 AEKYPGQVIPLLGRFSELPQLLGKYKVKENSIDGFLFDFGCSSMQFDRPERGFMISKNGP 216

Query: 133 LDMRMS---C-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQT 187
           LDMRM    C    +A+DV+ +A+ +DL  IL   GEEK+A +IA AI++ R +    +T
Sbjct: 217 LDMRMDGFRCPEEPTAADVLARADERDLYHILKYYGEEKRAKKIARAIIEARYTFRSLRT 276

Query: 188 TQDLSSLIQKTVYFSKNNR------IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
           TQ+L+ LI+ +++ S  N        H AT++FQALRIFVNNE+ E+  G+  AEK LK 
Sbjct: 277 TQELAKLIE-SLFPSDINTDQIGRFQHSATKTFQALRIFVNNELNEINHGIVIAEKLLKI 335

Query: 242 GGLLIVVSFHSLEDRLVKKFFAS---------------RSGKVMAVRHMIPSNAHPAVFQ 286
            G +I +SFHSLED +VK+  +                  GKV   +  I      + + 
Sbjct: 336 NGRMITISFHSLEDTIVKRHLSGNVTDSVANQLPLRYRNYGKVWTCKEDI-MELTESPWM 394

Query: 287 SITKKVVVPTQEDVAFNRRSRSAKLRA 313
            + K ++ PT E+V +N RSRSAK RA
Sbjct: 395 MLHKHILSPTDEEVYYNPRSRSAKFRA 421


>gi|253689961|ref|YP_003019151.1| S-adenosyl-methyltransferase MraW [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|262824751|sp|C6DEV1|RSMH_PECCP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|251756539|gb|ACT14615.1| S-adenosyl-methyltransferase MraW [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 314

 Score =  204 bits (518), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 123/309 (39%), Positives = 186/309 (60%), Gaps = 16/309 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN   G + +D TFG GG+SR    ++G    ++A+DRDP A+   + 
Sbjct: 7   HTTVLLDEAVNGLNIRSGGIYIDGTFGRGGHSRLILSQLGPEGRLLAIDRDPQAIEAAK- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            + D +  FS+    FS + +YV + G    +DGV+ DLGVSS Q+D  +RGFSF + GP
Sbjct: 66  AIDDPR--FSIIHGPFSAMAEYVAELGLTGQIDGVLLDLGVSSPQLDDPERGFSFMRDGP 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G+SA++ + +A   D+  +L   GEE+ A RIA AIV+R ++ P   T++L
Sbjct: 124 LDMRMDPTRGLSAAEWLMKAEADDIVWVLKTFGEERFAKRIARAIVERNRTEPMTRTKEL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI       + ++ HPATRSFQA+RI++N+E+EE+ + L  A   L   G L V+SFH
Sbjct: 184 AELIAAASPVREKHK-HPATRSFQAIRIYINSELEEIERALEGALSVLAPQGRLSVISFH 242

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSI--TKKVVVPTQEDVAFNRRSR 307
           SLEDR+VK+F    SR  +V A   +          Q++    K ++P++ +VA N R+R
Sbjct: 243 SLEDRIVKRFIRHQSRGPQVPAGLPLTEEQLRSQGGQTLKAVGKKLMPSEAEVAENPRAR 302

Query: 308 SAKLRAGMR 316
           S+ LR   R
Sbjct: 303 SSVLRFAER 311


>gi|269137987|ref|YP_003294687.1| S-adenosyl-methyltransferase MraW [Edwardsiella tarda EIB202]
 gi|267983647|gb|ACY83476.1| S-adenosyl-methyltransferase MraW [Edwardsiella tarda EIB202]
 gi|304558034|gb|ADM40698.1| S-adenosyl-methyltransferase MraW [Edwardsiella tarda FL6-60]
          Length = 313

 Score =  204 bits (518), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 125/310 (40%), Positives = 188/310 (60%), Gaps = 19/310 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +A LN     + +D TFG GG+SR    ++G+   +IA+DRDP A++   +
Sbjct: 7   HKTVLLDEAVAGLNLRSDGIYIDGTFGRGGHSRLILSQLGAEGRLIAIDRDPQAIAAAAQ 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  +FS+    FS L DYV + G    +DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 67  ID---DPRFSIVHGPFSALADYVQEMGLSGRIDGILLDLGVSSPQLDDPERGFSFMRDGP 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G+SA+  + QA  +D+  +L   GEE+ A RIA AIV+R ++ P   T++L
Sbjct: 124 LDMRMDPSRGLSAAQWLMQAEEEDIAWVLKTFGEERFAKRIARAIVERNRTEPLTRTREL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           ++LI +   F + ++ HPATRSFQA+RI++N+E++E+ + L  A  AL   G L V+SFH
Sbjct: 184 AALISEASPFKEKHK-HPATRSFQAIRIYINSELDEIERALEGALVALAPQGRLSVISFH 242

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRRS 306
           SLEDRLVK+F    S      + +  + A          +++ K+  +P + +VA N R+
Sbjct: 243 SLEDRLVKRFMRQYSRGPQVPKGLPLTEAQLQAQGGPQLKALGKR--MPGEREVADNPRA 300

Query: 307 RSAKLRAGMR 316
           RS+ LR   R
Sbjct: 301 RSSVLRVAER 310


>gi|91228506|ref|ZP_01262428.1| S-adenosyl-methyltransferase [Vibrio alginolyticus 12G01]
 gi|269967393|ref|ZP_06181453.1| S-adenosyl-methyltransferase mraW [Vibrio alginolyticus 40B]
 gi|91187940|gb|EAS74250.1| S-adenosyl-methyltransferase [Vibrio alginolyticus 12G01]
 gi|269827981|gb|EEZ82255.1| S-adenosyl-methyltransferase mraW [Vibrio alginolyticus 40B]
          Length = 316

 Score =  203 bits (517), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 125/309 (40%), Positives = 177/309 (57%), Gaps = 20/309 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H+ VLL + I  L   P  V +D TFG GG+SR+   K+G N  + ++DRDP A++   E
Sbjct: 7   HISVLLNESIDGLAIKPDGVYIDGTFGRGGHSRTILSKLGENGRLYSIDRDPQAIA---E 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +    +F++    FS + +Y  + G    VDGV+ DLGVSS Q+D  +RGFSF K GP
Sbjct: 64  AGKINDPRFTIIHGPFSGIAEYAEEYGLVGKVDGVLLDLGVSSPQLDDAERGFSFMKDGP 123

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ---SAPFQTT 188
           LDMRM   SG+  S  + +A++ D+T ++   GE+K A RIA AIV  R+   + P   T
Sbjct: 124 LDMRMDPTSGVPVSQWLMEADLDDITWVIREFGEDKHARRIAKAIVAYREDEENEPMVRT 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ LI      S   + HPATR+FQA RI++N+E+EE+   L+ A   L   G L V+
Sbjct: 184 GQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAASILAPEGRLSVI 243

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSN-----AHPAVFQSITKKVVVPTQEDVAFN 303
           SFHSLEDR+VK+F    S K   V H IP       A  +       K + P+++++  N
Sbjct: 244 SFHSLEDRMVKRFIRKES-KGPEVPHGIPMTEEQIRALGSANMKAVSKAIKPSKQEIEMN 302

Query: 304 RRSRSAKLR 312
            RSRS+ LR
Sbjct: 303 PRSRSSVLR 311


>gi|294635001|ref|ZP_06713518.1| S-adenosyl-methyltransferase MraW [Edwardsiella tarda ATCC 23685]
 gi|291091600|gb|EFE24161.1| S-adenosyl-methyltransferase MraW [Edwardsiella tarda ATCC 23685]
          Length = 314

 Score =  203 bits (517), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 126/311 (40%), Positives = 189/311 (60%), Gaps = 20/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +A LN     + +D TFG GG+SR    ++G+   +IA+DRDP A++    
Sbjct: 7   HKTVLLDEAVAGLNLRSDGIYIDGTFGRGGHSRLILSQLGAEGRLIAIDRDPQAIAA--- 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +    +FS+    FS L +YV + G    +DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 64  AAQINDARFSIVHGPFSALAEYVEELGLVGRIDGILLDLGVSSPQLDDPERGFSFMRDGP 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTTQD 190
           LDMRM  S G+SA+D + QA  +D+  +L   GEE+ A RIA AIV+R R  AP   T++
Sbjct: 124 LDMRMDPSRGLSAADWLMQAEEEDIAWVLKTFGEERFAKRIARAIVERNRTEAPLTRTRE 183

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L++LI +   F + ++ HPATRSFQA+RI++N+E++E+ + L  A   L   G L V+SF
Sbjct: 184 LAALISEASPFKEKHK-HPATRSFQAIRIYINSELDEIERALEGALAVLAPAGRLSVISF 242

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305
           HSLEDRLVK+F    S      + +  + A          +++ K+  +P +++VA N R
Sbjct: 243 HSLEDRLVKRFIRQYSRGPQVPKGLPLTEAQLQAQGGPQLKALGKR--MPGEQEVANNPR 300

Query: 306 SRSAKLRAGMR 316
           +RS+ LR   R
Sbjct: 301 ARSSVLRVAER 311


>gi|254976251|ref|ZP_05272723.1| S-adenosyl-methyltransferase [Clostridium difficile QCD-66c26]
 gi|255093637|ref|ZP_05323115.1| S-adenosyl-methyltransferase [Clostridium difficile CIP 107932]
 gi|255315386|ref|ZP_05356969.1| S-adenosyl-methyltransferase [Clostridium difficile QCD-76w55]
 gi|255518051|ref|ZP_05385727.1| S-adenosyl-methyltransferase [Clostridium difficile QCD-97b34]
 gi|255651167|ref|ZP_05398069.1| S-adenosyl-methyltransferase [Clostridium difficile QCD-37x79]
 gi|260684233|ref|YP_003215518.1| S-adenosyl-methyltransferase MraW [Clostridium difficile CD196]
 gi|260687892|ref|YP_003219026.1| S-adenosyl-methyltransferase MraW [Clostridium difficile R20291]
 gi|306521014|ref|ZP_07407361.1| S-adenosyl-methyltransferase MraW [Clostridium difficile QCD-32g58]
 gi|260210396|emb|CBA64792.1| S-adenosyl-methyltransferase [Clostridium difficile CD196]
 gi|260213909|emb|CBE05954.1| S-adenosyl-methyltransferase [Clostridium difficile R20291]
          Length = 311

 Score =  203 bits (517), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 118/308 (38%), Positives = 175/308 (56%), Gaps = 13/308 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           HV VLL + I  LN  P  V +D T G  G+S+   K  S+    I  D+D  A+S  +E
Sbjct: 5   HVSVLLNECIENLNIKPDGVYVDCTMGGAGHSKEIVKKLSDKGLFIGFDQDKNAISTAKE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + +Y+ +     + F  +++ +   GV   DGV+ DLGVSS Q+D  DRGFS+ +  PL
Sbjct: 65  RLSEYESRVKFVHSNFENIKEELEKIGVYKIDGVLADLGVSSHQLDEADRGFSYMQDAPL 124

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM      SA DVVN     +LT+I+   GE+  A RIA  IV+ R + P +TT  L 
Sbjct: 125 DMRMDVRCEFSAYDVVNTYTEDELTKIIKDYGEDNWAKRIAKFIVEERANKPIETTGKLV 184

Query: 193 SLIQKTVYFSKNNRI---HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            +I+K +   K  RI   HPA R+FQA+RI VNNE+  + + +  A   +  GG + +++
Sbjct: 185 DIIKKAI--PKKARIDGPHPAKRTFQAIRIEVNNELGVITKMINDASSIMNKGGRICIIT 242

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK  F   +   +  +H+ I      +  + IT+K ++P++E++  N RSRS
Sbjct: 243 FHSLEDRIVKNAFKHLASDCICPQHLPICQCDKESEVKIITRKPILPSEEEIEVNPRSRS 302

Query: 309 AKLRAGMR 316
           AKLR   +
Sbjct: 303 AKLRVAEK 310


>gi|58583456|ref|YP_202472.1| S-adenosyl-methyltransferase MraW [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58428050|gb|AAW77087.1| cell division protein [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 353

 Score =  203 bits (517), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 124/299 (41%), Positives = 175/299 (58%), Gaps = 11/299 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HVPVL  +V+  L        LD TFG GG++R   +    G  ++ +D+DP A++  ++
Sbjct: 24  HVPVLYTQVLDGLQVTENGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDPEAIAVAEQ 83

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
           T      + S+ + +F+ L   V    VDG++ DLGVSS Q++   RGFSF K GPLDMR
Sbjct: 84  TF-GGDARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLEVAGRGFSFGKDGPLDMR 142

Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M   SG SA+  + QA  +++  +L   GEE+Q+ RIA AIV RR   P   T  L+ LI
Sbjct: 143 MDPDSGQSAAQWLAQATDREIADVLWTYGEERQSRRIARAIVARRAEQPLLRTAQLADLI 202

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
             +V    +++ HPATRSFQA+RI++N E+++L  GL +A  ALK GG L V+SFHSLED
Sbjct: 203 -ASVMPRGDSKTHPATRSFQAIRIYINRELDDLETGLDAALAALKPGGRLAVISFHSLED 261

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           R+VK+F A R  K       +P  A P V   Q ++  +     E +  N R+RSA LR
Sbjct: 262 RIVKQFMA-RYAKAPPSNRRLP-EAQPFVPTLQLVSGAIKADDAE-LNVNPRARSAVLR 317


>gi|68565414|sp|Q5GW34|RSMH_XANOR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 337

 Score =  203 bits (517), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 124/299 (41%), Positives = 175/299 (58%), Gaps = 11/299 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HVPVL  +V+  L        LD TFG GG++R   +    G  ++ +D+DP A++  ++
Sbjct: 8   HVPVLYTQVLDGLQVTENGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDPEAIAVAEQ 67

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
           T      + S+ + +F+ L   V    VDG++ DLGVSS Q++   RGFSF K GPLDMR
Sbjct: 68  TF-GGDARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLEVAGRGFSFGKDGPLDMR 126

Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M   SG SA+  + QA  +++  +L   GEE+Q+ RIA AIV RR   P   T  L+ LI
Sbjct: 127 MDPDSGQSAAQWLAQATDREIADVLWTYGEERQSRRIARAIVARRAEQPLLRTAQLADLI 186

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
             +V    +++ HPATRSFQA+RI++N E+++L  GL +A  ALK GG L V+SFHSLED
Sbjct: 187 -ASVMPRGDSKTHPATRSFQAIRIYINRELDDLETGLDAALAALKPGGRLAVISFHSLED 245

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           R+VK+F A R  K       +P  A P V   Q ++  +     E +  N R+RSA LR
Sbjct: 246 RIVKQFMA-RYAKAPPSNRRLP-EAQPFVPTLQLVSGAIKADDAE-LNVNPRARSAVLR 301


>gi|53729126|ref|ZP_00134091.2| COG0275: Predicted S-adenosylmethionine-dependent methyltransferase
           involved in cell envelope biogenesis [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126207498|ref|YP_001052723.1| S-adenosyl-methyltransferase MraW [Actinobacillus pleuropneumoniae
           L20]
 gi|263440608|sp|A3MY82|RSMH_ACTP2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|126096290|gb|ABN73118.1| S-adenosyl-methyltransferase MraW [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
          Length = 313

 Score =  203 bits (517), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 125/313 (39%), Positives = 183/313 (58%), Gaps = 18/313 (5%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPF 69
           ++ T+  H+ VLL + +  L   P  + +D TFG GG+SR      S    +IA DRDP 
Sbjct: 1   MNDTVHKHITVLLHEAVDGLAIKPNGIYIDGTFGRGGHSRLILSKLSEQGRLIATDRDPR 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGF 125
           A++    T+ D +  F +    FS + +     G    +DG++ DLGVSS Q+D  +RGF
Sbjct: 61  AIAEAN-TINDAR--FQIVHTAFSAIPEVCEQLGLTGKIDGILLDLGVSSPQLDDAERGF 117

Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF + GPLDMRM  + G+SA++ + Q +V DL  +L   GEE+ A RIA A+V   +SA 
Sbjct: 118 SFMRDGPLDMRMDTTKGLSAAEWLAQVSVDDLAWVLKTFGEERFAKRIAQAVVSYNKSAT 177

Query: 185 --FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
                T  L+ +I   V F K+   HPATRSFQA+RIF+N+E++EL + L+SA   L   
Sbjct: 178 DKISRTLQLAQIIADAVPF-KDKHKHPATRSFQAIRIFINSELDELEKALQSALSVLAPE 236

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP---SNAHPAVFQSITKKVVVPTQED 299
           G L ++SFHSLEDR+VK+F   ++ K M V   +P   S  +  +   I  K ++P++ +
Sbjct: 237 GRLSIISFHSLEDRMVKQFM-KKNSKGMGVPKGLPILESELNKNIPLKIIGKAIMPSEAE 295

Query: 300 VAFNRRSRSAKLR 312
           +  N RSRSA LR
Sbjct: 296 IEANPRSRSAVLR 308


>gi|309792354|ref|ZP_07686822.1| S-adenosyl-methyltransferase MraW [Oscillochloris trichoides DG6]
 gi|308225575|gb|EFO79335.1| S-adenosyl-methyltransferase MraW [Oscillochloris trichoides DG6]
          Length = 317

 Score =  203 bits (517), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 126/303 (41%), Positives = 175/303 (57%), Gaps = 16/303 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H+ VL + V A LNP PG + LD T G GG++ +  +       +I +D DP A++  Q 
Sbjct: 16  HISVLAQPVQAALNPRPGGIYLDGTLGGGGHALAVLQAAQPDGRLIGIDADPAALAAAQA 75

Query: 77  TMRDYK---EQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130
            M         +  F   F  +       G+   DG++ DLGVSS Q+D  +RGFSF   
Sbjct: 76  RMAAANIPASSYQFFHGRFGAMAQIARQAGITSCDGILLDLGVSSPQLDWAERGFSFSAD 135

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
           GPLDMR+  + G +A+D+VN  + + L  I+   GEE+ + +IA  IV+RR+ APF+ T 
Sbjct: 136 GPLDMRLDPTQGHTAADLVNTLDEQYLADIIFRYGEERGSRKIARLIVERRKHAPFERTA 195

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           DL++L+ + V      RIHPATR+FQALRI VN E+E+L   L  A   L +GG L V+S
Sbjct: 196 DLAALVARAVGRGGRERIHPATRTFQALRIAVNTELEQLEIALPQAVDLLHSGGRLAVIS 255

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDR+VK F  + SG      +   +N  P   + ITKK +    E++A N RSRSA
Sbjct: 256 FHSLEDRIVKHFLRAESG------YGGNANPRPPRLRIITKKPLEADAEELAANPRSRSA 309

Query: 310 KLR 312
           KLR
Sbjct: 310 KLR 312


>gi|117620544|ref|YP_858331.1| S-adenosyl-methyltransferase MraW [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|263446603|sp|A0KPY0|RSMH_AERHH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|117561951|gb|ABK38899.1| S-adenosyl-methyltransferase MraW [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 312

 Score =  203 bits (516), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 128/312 (41%), Positives = 184/312 (58%), Gaps = 16/312 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQ 75
           +H+ VLL + +  L   P  + +D TFG GG+SR   + +G N  +IA+DRDP A++   
Sbjct: 6   EHITVLLHEAVEGLAIKPDGIYVDGTFGRGGHSRLILQQLGPNGRLIAIDRDPQAIA--- 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           E  +    +F +    FS +  Y+ ++G    VDG + DLGVSS Q+D  +RGFSF K G
Sbjct: 63  EAAKIQDPRFEIVHGPFSGIASYLDERGLLGKVDGFLLDLGVSSPQLDDAERGFSFMKDG 122

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM   SG SA++ + +A+V D+  +L   GEE+ A +IA AIV  R + P+  T+ 
Sbjct: 123 PLDMRMDPTSGQSAAEWLARADVDDIAWVLKTFGEERFAKKIARAIVHDRVTEPYVRTRQ 182

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ +I + V  SK    H ATRSFQA+RI++N+E++E+   L  A + L   G L V+SF
Sbjct: 183 LAEMIAR-VNPSKEKGKHAATRSFQAIRIYINSELDEIETALNGALQVLAPEGRLSVISF 241

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSITK--KVVVPTQEDVAFNRRSR 307
           HSLEDRLVK F   +  K   V H IP + A  A  + +    K + P++ +V  N RSR
Sbjct: 242 HSLEDRLVKHFI-RKHEKGPEVPHGIPLTEAQLAGGRKLKSVGKALKPSEHEVNENSRSR 300

Query: 308 SAKLRAGMRTVE 319
           S+ LR   R  E
Sbjct: 301 SSVLRVAQRLAE 312


>gi|110804146|ref|YP_687666.1| S-adenosyl-methyltransferase MraW [Shigella flexneri 5 str. 8401]
 gi|123147294|sp|Q0T8B5|RSMH_SHIF8 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|110613694|gb|ABF02361.1| putative apolipoprotein [Shigella flexneri 5 str. 8401]
          Length = 313

 Score =  203 bits (516), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 124/311 (39%), Positives = 187/311 (60%), Gaps = 19/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN  P  + +D TFG GG+SR    ++G    ++A+DRDP A++  + 
Sbjct: 7   HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           T+ D +  FS+    FS L +YV ++     +DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 66  TIDDPR--FSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G SA++ +  A   D+  +L   GEE  A RIA AIV+R +  P   T++L
Sbjct: 124 LDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEEHFAKRIARAIVERNREQPMTRTKEL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L ++SFH
Sbjct: 184 AEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISFH 242

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306
           SLEDR+VK+F    SR  +V A   M             +++ K  ++P +++VA N R+
Sbjct: 243 SLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGK--LMPGEDEVAENPRA 300

Query: 307 RSAKLRAGMRT 317
           RS+ LR   RT
Sbjct: 301 RSSVLRIAERT 311


>gi|39998167|ref|NP_954118.1| S-adenosyl-methyltransferase MraW [Geobacter sulfurreducens PCA]
 gi|42559425|sp|P60396|RSMH_GEOSL RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|39985113|gb|AAR36468.1| S-adenosyl-methyltransferase MraW [Geobacter sulfurreducens PCA]
 gi|298507105|gb|ADI85828.1| SAM-dependent membrane protein methyltransferase MraW [Geobacter
           sulfurreducens KN400]
          Length = 311

 Score =  203 bits (516), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 125/304 (41%), Positives = 174/304 (57%), Gaps = 11/304 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H PV+  +V+  L+P PG V +D T G  G++R   +  S    +I  DRDP A+   +E
Sbjct: 5   HRPVMPAEVLEYLSPRPGGVYVDGTLGGAGHARLILEATSPDGMLIGFDRDPAALEVARE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  + E+F      FS++   + + GVDGV   + D+GVSS Q+D  +RGFSF    PL
Sbjct: 65  RLALFGERFRPVPGNFSEMGRVLAELGVDGVDGFLLDVGVSSHQLDTAERGFSFLTDAPL 124

Query: 134 DMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM +    +A+D+VN  N  +L RI+   GEE+ A RIA  IVK R   P + T  L 
Sbjct: 125 DMRMNTLVPGTAADLVNDLNEHELARIIKEYGEERWARRIASFIVKARVDGPIERTLQLV 184

Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  +   +   RIHPATR+FQALRI VN+E+  L +GL SA   L+ GG  +V+SFH
Sbjct: 185 DIIKGAIPRGAWEERIHPATRTFQALRIAVNDELGSLERGLESALGLLRPGGRGVVISFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK  F  R  +       +P      V   + +T + VV    +VA N R+RSA
Sbjct: 245 SLEDRIVKTMF-RRYAQGCTCPKELPRCVCGGVPRLRILTGRPVVAGDVEVAENPRARSA 303

Query: 310 KLRA 313
           KLRA
Sbjct: 304 KLRA 307


>gi|284030811|ref|YP_003380742.1| S-adenosyl-methyltransferase MraW [Kribbella flavida DSM 17836]
 gi|283810104|gb|ADB31943.1| S-adenosyl-methyltransferase MraW [Kribbella flavida DSM 17836]
          Length = 324

 Score =  203 bits (516), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 121/300 (40%), Positives = 182/300 (60%), Gaps = 22/300 (7%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74
           HVPV+L++V+ALL PA   PG V++DAT G GG+S +F +    + +I LDRDP A+   
Sbjct: 10  HVPVMLDRVVALLAPALQQPGSVLVDATLGLGGHSEAFLQRCPEARLIGLDRDPAALRLA 69

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            E +  Y  + +L  A + +L   + + GV   DG++FDLGVSSMQ+D  DRGF++ +  
Sbjct: 70  GERLAPYAGRTTLVHAVYDELPRVLDELGVPAIDGILFDLGVSSMQLDEADRGFAYAQDA 129

Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  +   +A+DV+N  +  DL RIL   GEEK A +IA  IV+ R++ PF  +  
Sbjct: 130 PLDMRMDPTAPTTAADVLNTYSAADLARILFQYGEEKFARKIADRIVRARETEPFSHSAR 189

Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           LS L++  +   ++    HPA R+FQALRI VN+E++ L + L +A  AL   G ++V+S
Sbjct: 190 LSELVRDAIPQAARRTGGHPAKRTFQALRIEVNSELDVLRRALPAALGALALHGRIVVMS 249

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSN------AHPAVFQSITKKVVVPTQEDVAFN 303
           +HSLEDR+ K+  A+      A R  +P +       H    + +T+    PT+++VA N
Sbjct: 250 YHSLEDRITKQTLAA------ATRSDVPDDLPVIPAGHEPYLKLLTRGAERPTEDEVAEN 303


>gi|113869234|ref|YP_727723.1| S-adenosyl-methyltransferase MraW [Ralstonia eutropha H16]
 gi|123032664|sp|Q0K6L6|RSMH_RALEH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|113528010|emb|CAJ94355.1| conserved hypothetical protein [Ralstonia eutropha H16]
          Length = 333

 Score =  203 bits (516), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 127/315 (40%), Positives = 192/315 (60%), Gaps = 35/315 (11%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  V +D TFG GG+SR+   ++G +  ++A D+DP A++    
Sbjct: 14  HRTVLLDEAVDALVWRPDGVYVDGTFGRGGHSRAVLARLGPDGALVAFDKDPAAIAEAG- 72

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           T++D +  FS+  A+F+ + + +  +G V GV+ DLG+SS QID   RGFSF+  GPLDM
Sbjct: 73  TIKDAR--FSIEHASFAAMAERLSGRGHVAGVLLDLGISSPQIDEAARGFSFRFEGPLDM 130

Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR----QSAPFQTTQD 190
           RM  + GI+A+  + QA+ +D+ R++   GEE+ A +IA AIV RR       P  TT D
Sbjct: 131 RMDTTRGITAAQWLAQADEQDIARVIRDYGEERFAVQIAKAIVARRSEPGDGGPIATTAD 190

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L++L+ K V   +  +  PATR+FQALRI VN E+E+L +GL++A + L+ GG L+V+SF
Sbjct: 191 LAALVAKAVKTREKGQ-DPATRTFQALRIHVNQELEDLERGLKAAYELLQVGGRLVVISF 249

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSITKKVVVPT------------Q 297
           HSLEDR+VK+F A+         H  P  +A PA+ ++  +   +P              
Sbjct: 250 HSLEDRIVKRFMAA---------HARPQQDADPALRRAPLRAADLPQPTLRLLGRYKPGP 300

Query: 298 EDVAFNRRSRSAKLR 312
           E+VA N R+RSA +R
Sbjct: 301 EEVAANPRARSAVMR 315


>gi|323144058|ref|ZP_08078702.1| S-adenosyl-methyltransferase MraW [Succinatimonas hippei YIT 12066]
 gi|322416171|gb|EFY06861.1| S-adenosyl-methyltransferase MraW [Succinatimonas hippei YIT 12066]
          Length = 316

 Score =  203 bits (516), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 129/312 (41%), Positives = 172/312 (55%), Gaps = 20/312 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQE 76
           H+PVLL + +A LN  P  + +DATFG GG+SR   K       + ALDRD  A+   + 
Sbjct: 5   HIPVLLNETLAGLNINPDGIYVDATFGRGGHSREILKRLNKNGRLYALDRDLSAIEAAKS 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                 E+FS+  A FSQL++   D G    V+G++ D+GVSS Q+D   RGFSF K GP
Sbjct: 65  IA---DERFSIVHARFSQLKEVCEDFGILGKVNGILMDIGVSSPQLDDASRGFSFDKDGP 121

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S  I A+ +VN  + KDL  I    GEE+ A ++A+AIV++R+  PF TT  L
Sbjct: 122 LDMRMDQSAKIDAALIVNTYDAKDLAYIFKTYGEERFAGKVANAIVRQREKTPFTTTLAL 181

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI  ++   K    H ATR FQALRI VN+E+EEL   L  +   L   G L V+SFH
Sbjct: 182 ADLISASIP-GKPGPKHKATRCFQALRIAVNSELEELKSALDGSIDVLDKDGRLCVISFH 240

Query: 252 SLEDRLVKKFFASRS-------GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           SLEDR+VK F    S       G  +    +          Q I+   +  T  +++ N 
Sbjct: 241 SLEDRIVKTFIRENSEGPKLPRGLPITDEELAELKLKSCTLQKIS-GAIKATDAEISQNP 299

Query: 305 RSRSAKLRAGMR 316
           RSRSA LR   R
Sbjct: 300 RSRSAVLRVAAR 311


>gi|313901510|ref|ZP_07834958.1| S-adenosyl-methyltransferase MraW [Thermaerobacter subterraneus DSM
           13965]
 gi|313468223|gb|EFR63689.1| S-adenosyl-methyltransferase MraW [Thermaerobacter subterraneus DSM
           13965]
          Length = 383

 Score =  203 bits (516), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 124/302 (41%), Positives = 172/302 (56%), Gaps = 15/302 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+PVLL +V+A L P  G   +D T GAGG++ +  +       ++ +DRDP A++    
Sbjct: 66  HIPVLLAEVLAYLQPERGGRFVDGTVGAGGHAAAILEAAGEAGRLLGIDRDPQALALAAA 125

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  + ++  L    F  L  ++   G   VDG++ DLGVSSMQ+D   RGFS+Q   PL
Sbjct: 126 RLAPFGDRVRLVHGDFRDLGRHLAAAGWKAVDGILLDLGVSSMQLDDPARGFSYQVDAPL 185

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  S  ++A+D+VN A+   L R +   GEE+ A RIA  IV  RQ  P  TT  L 
Sbjct: 186 DMRMDPSQPVTAADLVNTASRDQLARWIAEYGEERWAGRIADFIVAARQRRPITTTLQLV 245

Query: 193 SLIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  V      R  HPA R+FQALRI VNNE+E L   L+ A   L+ GG L+V+SFH
Sbjct: 246 EVIKDAVPARARRRGGHPARRTFQALRIAVNNELEGLEAFLQEAAGYLRPGGRLVVISFH 305

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR VK+ F     + +A   +       A F+ +T++ V P  E+   N R+RSAKL
Sbjct: 306 SLEDRAVKRAF-----RALAAPQV--GGKEGAAFRILTRRPVTPGDEEERRNPRARSAKL 358

Query: 312 RA 313
           RA
Sbjct: 359 RA 360


>gi|242238092|ref|YP_002986273.1| S-adenosyl-methyltransferase MraW [Dickeya dadantii Ech703]
 gi|263446348|sp|C6C9K0|RSMH_DICDC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|242130149|gb|ACS84451.1| S-adenosyl-methyltransferase MraW [Dickeya dadantii Ech703]
          Length = 313

 Score =  203 bits (516), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 122/308 (39%), Positives = 176/308 (57%), Gaps = 15/308 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76
           H  VLL++ +  LN     + +D TFG GG+SR   S       ++A+DRDP AVS    
Sbjct: 7   HTTVLLDEAVNGLNIRSNGIYIDGTFGRGGHSRLILSHLGTDGQLLAIDRDPQAVSAASA 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
               +  +FS+    FS L DYV ++G    +DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 67  I---HDARFSIIHGPFSSLADYVAERGLVGRIDGILLDLGVSSPQLDDPERGFSFMRDGP 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G+SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   T+ L
Sbjct: 124 LDMRMDPSRGVSAAEWLMNAEADDIAWVLKTFGEERFAKRIARAIVERNRVEPLTRTKAL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI       + ++ HPATRSFQA+RI++N+E++E+ + L  A + L   G L V+SFH
Sbjct: 184 AELIAAACPIREKHK-HPATRSFQAIRIYINSELDEIERALEGALQVLAPHGRLSVISFH 242

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNRRSRS 308
           SLEDR+VK+F    S        +  + A        T K V   +P++ +V  N R+RS
Sbjct: 243 SLEDRIVKRFIRQHSRGPQVPAGLPLTEAQLKSQGGRTLKAVGKMMPSESEVGENPRARS 302

Query: 309 AKLRAGMR 316
           + LR   R
Sbjct: 303 SVLRFAER 310


>gi|271502050|ref|YP_003335076.1| S-adenosyl-methyltransferase MraW [Dickeya dadantii Ech586]
 gi|270345605|gb|ACZ78370.1| S-adenosyl-methyltransferase MraW [Dickeya dadantii Ech586]
          Length = 313

 Score =  203 bits (516), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 127/311 (40%), Positives = 184/311 (59%), Gaps = 19/311 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQ 75
           +H  VLL++ +  LN     + +D TFG GG+SR   S       ++A+DRDP AV+   
Sbjct: 6   NHTTVLLDEAVNGLNIRSNGIYIDGTFGRGGHSRLILSHLGPEGRLLAIDRDPQAVAVAN 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            T+ D +  FS+    FS+L DYV ++G    +DG++ DLGVSS Q+D  +RGFSF + G
Sbjct: 66  -TIDDAR--FSIIHGPFSELADYVDERGLTGKIDGILLDLGVSSPQLDDPERGFSFMRDG 122

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + G SA++ + +A   D+  +L   GEE+ A RIA AIV+R +  P   T+ 
Sbjct: 123 PLDMRMDPTRGQSAAEWLMKAEADDIAWVLKTFGEERFAKRIARAIVERNRIDPLTRTKA 182

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ LI       + ++ HPATRSFQA+RI++N+E+EE+ + L  A K L   G L V+SF
Sbjct: 183 LAELIAAASPIREKHK-HPATRSFQAIRIYINSELEEIERALDGALKVLAPEGRLSVISF 241

Query: 251 HSLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHP---AVFQSITKKVVVPTQEDVAFNRR 305
           HSLEDR+VK+F    SR  +V A   +             +SI K  ++P  ++VA N R
Sbjct: 242 HSLEDRIVKRFIRQHSRGPQVPAGLPLTEEQLRSQGGQTLKSIGK--MMPPDDEVAENPR 299

Query: 306 SRSAKLRAGMR 316
           +RS+ LR   R
Sbjct: 300 ARSSVLRFAER 310


>gi|126435853|ref|YP_001071544.1| S-adenosyl-methyltransferase MraW [Mycobacterium sp. JLS]
 gi|262825143|sp|A3Q1M6|RSMH_MYCSJ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|126235653|gb|ABN99053.1| S-adenosyl-methyltransferase MraW [Mycobacterium sp. JLS]
          Length = 324

 Score =  203 bits (516), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 123/310 (39%), Positives = 182/310 (58%), Gaps = 18/310 (5%)

Query: 19  DHVPVLLEKVIALLNPA-----P---GKVILDATFGAGGYSRSFCK--MGSNVIALDRDP 68
           +H+PVLL++ + LL PA     P   G V++DAT GAGG++  F     G ++I LDRDP
Sbjct: 2   EHIPVLLDRCVELLTPALTRRNPDGRGAVLVDATLGAGGHAHRFLSDLPGLHLIGLDRDP 61

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGF 125
            A+    E +  + ++ SL +  +  + D +   GV    G +FDLGVSSMQ+D  +RGF
Sbjct: 62  QALQIAGERLAPFGDRVSLVRTRYDGIDDALAQTGVAEVSGFLFDLGVSSMQLDRTERGF 121

Query: 126 SFQKSGPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           S+    PLDMRM S + ++A+DVVN    KD+TRIL   GEE+ A+RIA  IV+RR   P
Sbjct: 122 SYSADAPLDMRMDSDAPLTAADVVNTFAEKDITRILREFGEERFAARIAKHIVRRR---P 178

Query: 185 FQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
             TT +L  L+   +   ++    HPA R+FQALRI VN+E++ L   + +A  AL+ GG
Sbjct: 179 LNTTGELVELLYDAIPAPARRTGGHPAKRTFQALRIAVNSELDSLRAAIPAALGALETGG 238

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            ++V+++ SLEDR+VK  FA+ +         +    H   F ++T+     T E++  N
Sbjct: 239 RIVVMAYQSLEDRIVKTEFAAATASRTPPGLPVELPGHEPEFVALTRGAERATPEEIERN 298

Query: 304 RRSRSAKLRA 313
            RS   +LRA
Sbjct: 299 PRSAPVRLRA 308


>gi|94312067|ref|YP_585277.1| S-adenosyl-methyltransferase MraW [Cupriavidus metallidurans CH34]
 gi|123259838|sp|Q1LIL8|RSMH_RALME RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|93355919|gb|ABF10008.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Cupriavidus metallidurans CH34]
          Length = 325

 Score =  203 bits (516), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 126/324 (38%), Positives = 197/324 (60%), Gaps = 35/324 (10%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMG--SNVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P    +D TFG GG+SR+   ++G    ++A D+DP A++    
Sbjct: 14  HRTVLLDEAVDALVWRPDGAYVDGTFGRGGHSRAVLARLGPAGTLVAFDKDPAAIAEAG- 72

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           T++D +  FS+  A+F+++ D +  +G V GV+ DLG+SS QID   RGFSF+  GPLDM
Sbjct: 73  TIKDAR--FSIEHASFAEMGDRLAGRGPVAGVLLDLGISSPQIDEAARGFSFRFEGPLDM 130

Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTTQD 190
           RM  + GI+A++ + QA+ +D+ R++   GEE+ A +IA AIV RR+ +       TT D
Sbjct: 131 RMDTTRGITAAEWLAQADEQDIARVIRDYGEERFALQIAKAIVARRRESGDGGALATTSD 190

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L++L+ K V   +  +  PATR+FQALRI++N E+E+L +GL++A + L+ GG L+V+SF
Sbjct: 191 LAALVAKAVKTREKGQ-DPATRTFQALRIYINQELEDLERGLKAAYELLQVGGRLVVISF 249

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPS-NAHPAVFQSITKKVVVPT------------Q 297
           HSLEDR+VK+F  +         H  P  +A PA+ ++  +   +P              
Sbjct: 250 HSLEDRIVKRFMQA---------HARPERDADPALRRAPLRAADLPQPTMKLLGRFKPGA 300

Query: 298 EDVAFNRRSRSAKLRAGMRTVERS 321
           E+VA N R+RSA +R   +  E+S
Sbjct: 301 EEVAGNPRARSAVMRVAEKLGEQS 324


>gi|307256031|ref|ZP_07537819.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Actinobacillus pleuropneumoniae serovar 10 str. D13039]
 gi|306865453|gb|EFM97348.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Actinobacillus pleuropneumoniae serovar 10 str. D13039]
          Length = 313

 Score =  203 bits (516), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 126/313 (40%), Positives = 181/313 (57%), Gaps = 18/313 (5%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPF 69
           ++ T+  H+ VLL + +  L   P  + +D TFG GG+SR      S    +IA DRDP 
Sbjct: 1   MNDTVHKHITVLLHEAVDGLAIKPNGIYIDGTFGRGGHSRLILSKLSEQGRLIATDRDPR 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGF 125
           A++    T+ D +  F +    FS + D     G    +DG++ DLGVSS Q+D  +RGF
Sbjct: 61  AIAEAN-TIDDTR--FQIVHTAFSAIPDVCEQLGLTGKIDGILLDLGVSSPQLDDAERGF 117

Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF + GPLDMRM  + G+SA++ + Q +  DL  +L   GEE+ A RIA A+V   +SA 
Sbjct: 118 SFMRDGPLDMRMDTTKGLSAAEWLAQVSADDLAWVLKTFGEERFAKRIAQAVVSYNKSAT 177

Query: 185 --FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
                T  L+ +I   V F K+   HPATRSFQA+RIF+N+E++EL + L+SA   L   
Sbjct: 178 DKISRTLQLAQIIADAVPF-KDKHKHPATRSFQAIRIFINSELDELEKALQSALSVLAPE 236

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP---SNAHPAVFQSITKKVVVPTQED 299
           G L ++SFHSLEDR+VK+F    S K M V   +P   S  +  +   I  K ++P++ +
Sbjct: 237 GRLSIISFHSLEDRMVKQFMKKNS-KGMGVPKGLPIFESELNKNIPLKIIGKAIMPSEAE 295

Query: 300 VAFNRRSRSAKLR 312
           +  N RSRSA LR
Sbjct: 296 IEANPRSRSAVLR 308


>gi|269795582|ref|YP_003315037.1| S-adenosyl-methyltransferase MraW [Sanguibacter keddieii DSM 10542]
 gi|269097767|gb|ACZ22203.1| S-adenosyl-methyltransferase MraW [Sanguibacter keddieii DSM 10542]
          Length = 346

 Score =  202 bits (515), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 122/329 (37%), Positives = 188/329 (57%), Gaps = 22/329 (6%)

Query: 8   TMSSAIHHTIGD--------HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCK 56
           T   A+H    D        H+PVLL++ + LL PA   PG V +D T G GG++ +  +
Sbjct: 6   TDGPAVHEEPADGPRETSDRHLPVLLDRCVELLAPALSVPGAVYVDCTLGMGGHTEAILE 65

Query: 57  MGSNV--IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDL 111
               V  I +DRDP A+      +  +  +F+   A + ++ D V ++G   V G++ DL
Sbjct: 66  RLPEVRVIGIDRDPQALELAGARLERFGSRFTGVHAVYDEIGDVVAEQGLTGVQGILMDL 125

Query: 112 GVSSMQIDCGDRGFSFQKSGPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQAS 170
           GVSS+QID  +RGFS+ +  PLDMRM S + ++A+DV+N  + +DL RIL   GEE+ AS
Sbjct: 126 GVSSLQIDERERGFSYAQDAPLDMRMDSTASLTAADVLNTYSERDLARILREYGEERFAS 185

Query: 171 RIAHAIVKRRQSAPFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELA 229
           +IA +IV +R++ P++ + DL  L++  +   ++    +PA R+FQALRI VN E+E L 
Sbjct: 186 KIARSIVAKREARPWERSADLVDLVRACIPAATRKGTGNPAKRTFQALRIEVNGELEVLE 245

Query: 230 QGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQS 287
           + L +A +AL  GG ++V S+HSLEDRL K+      G V +  H +P     H      
Sbjct: 246 RALPAAVEALAVGGRIVVESYHSLEDRLTKRELG--RGAVSSAPHDLPVEPETHKPYLSL 303

Query: 288 ITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           +T+      + ++  N RS S +LRA  R
Sbjct: 304 LTRGAEEADEAELERNPRSASVRLRAAER 332


>gi|289640760|ref|ZP_06472931.1| S-adenosyl-methyltransferase MraW [Frankia symbiont of Datisca
           glomerata]
 gi|289509336|gb|EFD30264.1| S-adenosyl-methyltransferase MraW [Frankia symbiont of Datisca
           glomerata]
          Length = 359

 Score =  202 bits (515), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 130/306 (42%), Positives = 191/306 (62%), Gaps = 14/306 (4%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSC 73
           H PVL ++V+ALL PA   P  V++DAT G  G++ +    C   + +I LDRDP A+  
Sbjct: 23  HTPVLSDRVVALLAPALLRPEAVLVDATVGLAGHASALLDACPT-ARLIGLDRDPQALEH 81

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +  + D  ++ +L  A + QL   +   G   V GV+FDLGVSS+Q+D  +RGFS+ + 
Sbjct: 82  SRARLADRADRATLVHAVYDQLPTVLDALGLTEVHGVLFDLGVSSLQLDSDERGFSYSRD 141

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM    G +A+DVVN  +  +LTRIL   GEE+ A RIA A+V  R   PF ++ 
Sbjct: 142 APLDMRMDPGRGRTAADVVNTYDADELTRILRHYGEERFARRIASAVVAERAREPFVSSA 201

Query: 190 DLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L+ L+++T+   ++ N  +PA R+FQALRI VN E+E LA+ L +A  AL  GG L+V+
Sbjct: 202 RLADLVRRTIPAATRRNGGNPAKRTFQALRIEVNGELEALARALPAALDALAVGGRLVVL 261

Query: 249 SFHSLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           ++HSLEDR+VK+ FA+R    V     +IP +A P   + +T+    P+ ++VA N R+ 
Sbjct: 262 AYHSLEDRMVKRAFAARVRPDVPPDLPVIPPDAAP-TMRWLTRGGETPSADEVAANPRAS 320

Query: 308 SAKLRA 313
           +AKLRA
Sbjct: 321 AAKLRA 326


>gi|163846346|ref|YP_001634390.1| S-adenosyl-methyltransferase MraW [Chloroflexus aurantiacus
           J-10-fl]
 gi|222524111|ref|YP_002568582.1| S-adenosyl-methyltransferase MraW [Chloroflexus sp. Y-400-fl]
 gi|263445774|sp|A9WG80|RSMH_CHLAA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446400|sp|B9LKK0|RSMH_CHLSY RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|163667635|gb|ABY34001.1| S-adenosyl-methyltransferase MraW [Chloroflexus aurantiacus
           J-10-fl]
 gi|222447990|gb|ACM52256.1| S-adenosyl-methyltransferase MraW [Chloroflexus sp. Y-400-fl]
          Length = 301

 Score =  202 bits (515), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 128/307 (41%), Positives = 181/307 (58%), Gaps = 24/307 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H PVLL +V+ +L P P    LDAT G GG++ +  +    G  ++ +D DP A++    
Sbjct: 7   HTPVLLTEVLTMLAPRPAGQYLDATVGGGGHALAVLQAAQPGGRLLGIDADPAALAATAA 66

Query: 77  TMRDYK--EQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            ++     EQ  L   +F+ L       G    DG++FDLGVSS Q+D  +RGFSF   G
Sbjct: 67  RLQAAGLIEQAVLCHGSFADLATLAATAGFGAFDGILFDLGVSSYQLDTPERGFSFTADG 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMR+  + G++A+D+VN+ + ++L  I+ + GEE  A RIA AIV+ R++ PFQ T +
Sbjct: 127 PLDMRLDPTQGLTAADMVNRLSERELADIIFLYGEEHAARRIARAIVEHRRTQPFQRTAE 186

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ ++ + V   ++ RIHPATR+FQALRI VN E++ L   L  A   L  GG L V+SF
Sbjct: 187 LAEVVARAVG-GRHGRIHPATRTFQALRIAVNQELDRLRATLPQAVDLLAPGGRLAVISF 245

Query: 251 HSLEDRLVKKFF-ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK+F  A  SG+                   +TKK +VPT  +VA N R+RSA
Sbjct: 246 HSLEDRIVKQFLRAEASGET-------------PRLTIVTKKPIVPTAAEVANNPRARSA 292

Query: 310 KLRAGMR 316
           KLR   R
Sbjct: 293 KLRVATR 299


>gi|182414441|ref|YP_001819507.1| S-adenosyl-methyltransferase MraW [Opitutus terrae PB90-1]
 gi|262824715|sp|B1ZU25|RSMH_OPITP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|177841655|gb|ACB75907.1| S-adenosyl-methyltransferase MraW [Opitutus terrae PB90-1]
          Length = 306

 Score =  202 bits (515), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 118/299 (39%), Positives = 165/299 (55%), Gaps = 6/299 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           H PVLL +V+  L P      LD TFG GG++R+  +  + V  +ALDRDP A       
Sbjct: 5   HQPVLLREVLGFLAPRARGRYLDCTFGGGGHTRALLEAAAEVRVVALDRDPAAQPRAAAL 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
              + E+F      F +L + +P +G DGV+FD GVSS Q+D  +RGFSF+   P DMRM
Sbjct: 65  RETFGERFEFIDRDFGRLAE-LPHEGFDGVLFDFGVSSFQLDETERGFSFRHDAPADMRM 123

Query: 138 SC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
              SG+ AS  +  A  + L R +   GEE+   RI  AI   R +     T  L+ LI 
Sbjct: 124 DPRSGVPASQWLETATEEMLVRAIRDFGEEQHWRRIVRAIRDARGTGALARTASLAELIA 183

Query: 197 KTVYFSKNN--RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
             +     +  +IHPATR+FQ +RI VN+EI  + + L +A   L  GG+L V+SFHSLE
Sbjct: 184 AAIPACDRHAAKIHPATRAFQGVRIAVNDEIGAIERALPAAFAKLAPGGVLCVISFHSLE 243

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           DR  K+FF    G+  +     P +    +   +T++ V P  +++A N RSRSAKLRA
Sbjct: 244 DRPAKQFFRRMCGQPESAADATPQDLRVKLADPLTRRPVTPADDELAANPRSRSAKLRA 302


>gi|269960233|ref|ZP_06174608.1| S-adenosyl-methyltransferase mraW [Vibrio harveyi 1DA3]
 gi|269835040|gb|EEZ89124.1| S-adenosyl-methyltransferase mraW [Vibrio harveyi 1DA3]
          Length = 316

 Score =  202 bits (515), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 127/309 (41%), Positives = 175/309 (56%), Gaps = 20/309 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H+ VLL + I  L   P  + +D TFG GG+SR+   K+G N  + ++DRDP A++   E
Sbjct: 7   HISVLLNESIDGLAIKPDGIYIDGTFGRGGHSRTILSKLGENGRLYSIDRDPQAIA---E 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +    +F++    FS +  Y  D G    VDGV+ DLGVSS Q+D  +RGFSF K GP
Sbjct: 64  AAKIDDPRFTIIHGPFSGMAQYAEDYGLVGKVDGVLLDLGVSSPQLDDAERGFSFMKDGP 123

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ---SAPFQTT 188
           LDMRM   SGI  S  + +A++ D+T ++   GE+K A RIA AIV  R+   + P   T
Sbjct: 124 LDMRMDPTSGIPVSQWLMEADLDDITWVIREFGEDKHARRIAKAIVAYREDEENEPMVRT 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ LI      S   + HPATR+FQA RI++N+E+EE+   L+ A   L   G L V+
Sbjct: 184 GQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAASILAPEGRLSVI 243

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSN-----AHPAVFQSITKKVVVPTQEDVAFN 303
           SFHSLEDR+VK+F    S K   V H IP       A  +       K   PT++++  N
Sbjct: 244 SFHSLEDRMVKRFIRKES-KGPEVPHGIPMTEEQIRALGSANMKPIGKANKPTKQEIDMN 302

Query: 304 RRSRSAKLR 312
            RSRS+ LR
Sbjct: 303 PRSRSSVLR 311


>gi|189423747|ref|YP_001950924.1| S-adenosyl-methyltransferase MraW [Geobacter lovleyi SZ]
 gi|263447561|sp|B3E3Z0|RSMH_GEOLS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|189420006|gb|ACD94404.1| S-adenosyl-methyltransferase MraW [Geobacter lovleyi SZ]
          Length = 313

 Score =  202 bits (515), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 128/305 (41%), Positives = 181/305 (59%), Gaps = 13/305 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQE 76
           H+ VL  +V+  L P PG   LD T G GG+S     K+G +  +I +DRDP A++   E
Sbjct: 6   HLSVLAREVMEQLAPRPGGTYLDGTLGGGGHSELILEKIGPDGLLIGIDRDPAALAAASE 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +R +   F   Q +F  L + +  +G++   G++ DLGVSS Q+D  +RGFSF+  GPL
Sbjct: 66  RLRRFGSCFRPLQGSFGDLAELLKQEGINTLDGLLLDLGVSSHQLDTDERGFSFRLDGPL 125

Query: 134 DMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           DMRM  SC G SA+D++   +  +L +I+   GEE+ A +IA  IV+ RQ  P  TT  L
Sbjct: 126 DMRMDRSC-GDSAADLLQDCSAGELEQIIKEFGEERWAKKIALRIVQTRQETPITTTLQL 184

Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           + L+  T+       RIHPATR+FQALRI VN E+E++ QG+R+   ALKAGG + V+SF
Sbjct: 185 ADLVAGTIPRRFHEERIHPATRTFQALRIAVNQELEQVEQGIRAGIAALKAGGRIAVISF 244

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+VK  F   +        M     N  P + + +T + V+   E+   N R+RS
Sbjct: 245 HSLEDRIVKHLFREAATGCTCPPRMPYCVCNKKPQL-RILTGRPVIAGPEETDRNPRARS 303

Query: 309 AKLRA 313
           AKLRA
Sbjct: 304 AKLRA 308


>gi|260775374|ref|ZP_05884271.1| S-adenosyl-methyltransferase MraW [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260608555|gb|EEX34720.1| S-adenosyl-methyltransferase MraW [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 316

 Score =  202 bits (515), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 128/309 (41%), Positives = 177/309 (57%), Gaps = 20/309 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H+ VLL + I  L   P    +D TFG GG+SR    ++G    + ++DRDP A++  Q 
Sbjct: 7   HISVLLHESIDGLAIKPDGTYIDGTFGRGGHSRQILSQLGEQGRLFSIDRDPQAIAEAQ- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           T+ D +  F++    FS +  Y  ++G    VDGV+ DLGVSS Q+D  +RGFSF K GP
Sbjct: 66  TIDDPR--FTIIHGPFSGMAKYAEERGLVGQVDGVLLDLGVSSPQLDDAERGFSFMKDGP 123

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---PFQTT 188
           LDMRM   SGI  S  + +A++ D+T ++   GE+K A RIA AIV  R++    P   T
Sbjct: 124 LDMRMDPTSGIPVSQWLMEADLDDITWVIREFGEDKHARRIAKAIVAYRENEENEPLTRT 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ LI      S   + HPATRSFQA RI++N+E+EE+   L+ A   L   G L V+
Sbjct: 184 GQLAKLISDAAPKSFKEKKHPATRSFQAFRIYINSELEEIDTALKGAASILAPEGRLSVI 243

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSIT----KKVVVPTQEDVAFN 303
           SFHSLEDR+VK+F    S K   V H IP + A      S       K + P++++V  N
Sbjct: 244 SFHSLEDRMVKRFIRKES-KGPEVPHGIPMTEAQIKALGSANLKPIGKAIKPSKQEVDIN 302

Query: 304 RRSRSAKLR 312
            RSRS+ LR
Sbjct: 303 TRSRSSVLR 311


>gi|158320404|ref|YP_001512911.1| S-adenosyl-methyltransferase MraW [Alkaliphilus oremlandii OhILAs]
 gi|263446681|sp|A8MH28|RSMH_ALKOO RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|158140603|gb|ABW18915.1| S-adenosyl-methyltransferase MraW [Alkaliphilus oremlandii OhILAs]
          Length = 311

 Score =  202 bits (514), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 125/310 (40%), Positives = 175/310 (56%), Gaps = 17/310 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           HV VLLE+ I  LN     + +D T G  G+S    K  S+   +I +D+D  A+    E
Sbjct: 5   HVSVLLEECIENLNIKENGIYVDGTLGGAGHSSEIAKRLSDKGLLIGIDQDENAIKAAGE 64

Query: 77  TMRDYKEQFSLFQATFSQ----LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            +   KE+  L +  FS     LQ+   D G+DG++ DLGVSS Q+D  DRGFS+    P
Sbjct: 65  KLTPMKERIKLVRDNFSNIDAILQNLEID-GIDGILLDLGVSSHQLDEADRGFSYMHDAP 123

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM     +SA +VVN    KDL  I+   GEEK A RIA+ IV  R+  P  TT  L
Sbjct: 124 LDMRMDTRQAVSAMEVVNSYTEKDLENIIKNYGEEKWAKRIANFIVDFRKEEPITTTHQL 183

Query: 192 SSLIQKTVYFSKNNRI---HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             +I++ +   K  RI   HPA R+FQA+RI VN E+E + + +  A + L  GG + ++
Sbjct: 184 VDVIKRAI--PKGARIDGPHPAKRTFQAIRIEVNGELEIINKTIDDAVRNLNPGGRICII 241

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           +FHSLEDR+VK  F   S   +      +   +  PAV + IT+K +VPT+E++  N R+
Sbjct: 242 TFHSLEDRIVKNAFRDLSNPCICPPEFPICRCDRKPAV-KIITRKPIVPTEEELELNPRA 300

Query: 307 RSAKLRAGMR 316
           RSAKLR   +
Sbjct: 301 RSAKLRVAEK 310


>gi|21241542|ref|NP_641124.1| S-adenosyl-methyltransferase MraW [Xanthomonas axonopodis pv. citri
           str. 306]
 gi|24212036|sp|Q8PPB5|RSMH_XANAC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|21106893|gb|AAM35660.1| cell division protein [Xanthomonas axonopodis pv. citri str. 306]
          Length = 342

 Score =  202 bits (514), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 125/324 (38%), Positives = 181/324 (55%), Gaps = 11/324 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HVPVL  +V+  L        LD TFG GG++R   +    G  ++ +D+DP A++  + 
Sbjct: 8   HVPVLYTQVLDGLQVTENGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDPEAIAVAEH 67

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
           +      + S+ + +F+ L   V    VDG++ DLGVSS Q+D   RGFSF K GPLDMR
Sbjct: 68  SF-GGDARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLDVAGRGFSFGKDGPLDMR 126

Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M   SG SA++ + QA+ +++  +L   GEE+Q+ RIA AIV RR   P   T  L+ LI
Sbjct: 127 MDPDSGQSAAEWLAQASDREIADVLWTYGEERQSRRIARAIVARRAEQPLLRTAQLADLI 186

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
             +V    +++ HPATRSFQA+RI +N E+ +L  GL +A  ALK GG L V+SFHSLED
Sbjct: 187 -ASVMPRGDSKTHPATRSFQAIRIHINRELADLEAGLDAALGALKPGGRLAVISFHSLED 245

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA-- 313
           R+VK+F A  +    + R +  +    A  Q ++  +     E +  N R+RSA LR   
Sbjct: 246 RIVKQFMARYAKAPPSNRRLPEAQPFVATLQLVSGAIKADDAE-LHVNPRARSAVLRVAE 304

Query: 314 --GMRTVERSIEDDSFVHLPRLPT 335
             G+   E  +   +     R PT
Sbjct: 305 KLGLGNGESGMGKGNSAAASRFPT 328


>gi|294664073|ref|ZP_06729474.1| S-adenosyl-methyltransferase MraW [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292606158|gb|EFF49408.1| S-adenosyl-methyltransferase MraW [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 347

 Score =  202 bits (514), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 120/297 (40%), Positives = 173/297 (58%), Gaps = 7/297 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HVPVL  +V+  L        LD TFG GG++R   +    G  ++ +D+DP A++  + 
Sbjct: 18  HVPVLYTQVLDGLQVTENGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDPDAIAVAEH 77

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
           +      + S+ + +F+ L   V    VDG++ DLGVSS Q+D   RGFSF K GPLDMR
Sbjct: 78  SF-GGDARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLDVAGRGFSFGKDGPLDMR 136

Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M   SG SA++ + QA+ +++  +L   GEE+Q+ RIA AIV RR   P   T  L+ LI
Sbjct: 137 MDPDSGQSAAEWLAQASDREIADVLWTYGEERQSRRIARAIVARRAEQPLLRTAQLADLI 196

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
             +V    +++ HPATRSFQA+RI +N E+ +L  GL +A  ALK GG L V+SFHSLED
Sbjct: 197 -ASVMPRGDSKTHPATRSFQAIRIHINRELADLEAGLDAALGALKPGGRLAVISFHSLED 255

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           R+VK+F A  +    + R +  +    A  Q ++  +     E +  N R+RSA LR
Sbjct: 256 RIVKQFMARYAKAPPSNRRLPEAQPFVATLQLVSGAIKADDAE-LHVNPRARSAVLR 311


>gi|254281944|ref|ZP_04956912.1| S-adenosyl-methyltransferase MraW [gamma proteobacterium NOR51-B]
 gi|219678147|gb|EED34496.1| S-adenosyl-methyltransferase MraW [gamma proteobacterium NOR51-B]
          Length = 306

 Score =  202 bits (514), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 124/303 (40%), Positives = 177/303 (58%), Gaps = 9/303 (2%)

Query: 20  HVPVLLEK-VIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
           H  VLLE+ V AL+  A G  + D T+G GG+SR      S    +I  D+DP A +   
Sbjct: 5   HRSVLLEEAVTALITTADGTYV-DGTYGRGGHSRRVLAALSEAGRLIGFDKDPEA-AVHA 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYV-PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           E +     +FS F  +F+ + D   P++G  GV+ DLGVSS Q+D G+RGFSFQ  GPLD
Sbjct: 63  EDLAATDSRFSFFHRSFADIPDIKRPEQGFSGVLLDLGVSSPQLDNGERGFSFQSDGPLD 122

Query: 135 MRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM S SG++A+  +N+A + +L ++    GEE+ A+RIA+AI+  R+  P + T  L+ 
Sbjct: 123 MRMDSSSGVTAAVWINKAPLAELIQVFRDYGEERFATRIANAIIDAREETPIERTGRLAQ 182

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           ++ K  +       HPATR FQA+RIF+N E+E+L   L      L  GG L+V+SFHSL
Sbjct: 183 IV-KVAHPRWEPHKHPATRVFQAIRIFINRELEDLESVLVRVIDTLDVGGRLVVISFHSL 241

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           EDR+VK+F    S  V   R +   +A       +  K V P+ E++A N R+RSA +R 
Sbjct: 242 EDRIVKRFMRDESRGVSVPRGVPIRDADMGRRLRVVGKAVKPSTEELANNPRARSAVMRV 301

Query: 314 GMR 316
             R
Sbjct: 302 AER 304


>gi|190149279|ref|YP_001967804.1| S-adenosyl-methyltransferase MraW [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|307262590|ref|ZP_07544221.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Actinobacillus pleuropneumoniae serovar 13 str. N273]
 gi|263446582|sp|B3GZK0|RSMH_ACTP7 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|189914410|gb|ACE60662.1| S-adenosyl-methyltransferase MraW [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|306872088|gb|EFN03801.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Actinobacillus pleuropneumoniae serovar 13 str. N273]
          Length = 313

 Score =  202 bits (514), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 125/313 (39%), Positives = 182/313 (58%), Gaps = 18/313 (5%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPF 69
           ++ T+  H+ VLL + +  L   P  + +D TFG GG+SR      S    +IA DRDP 
Sbjct: 1   MNDTVHKHITVLLHEAVDGLAIKPSGIYIDGTFGRGGHSRLILSKLSEQGRLIATDRDPR 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGF 125
           A++    T+ D +  F +    FS + D     G    +DG++ DLGVSS Q+D  +RGF
Sbjct: 61  AIAEAN-TIDDTR--FQIVHTAFSAIPDVCEQLGLTGKIDGILLDLGVSSPQLDDAERGF 117

Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF + GPLDMRM  + G+SA++ + Q +  DL  +L   GEE+ A RIA A+V   +SA 
Sbjct: 118 SFMRDGPLDMRMDTTKGLSAAEWLAQVSADDLAWVLKTFGEERFAKRIAQAVVSYNKSAT 177

Query: 185 --FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
                T  L+ +I   V F K+   HPATRSFQA+RIF+N+E++EL + L+SA   L   
Sbjct: 178 DKISRTLQLAQIIADAVPF-KDKHKHPATRSFQAIRIFINSELDELEKALQSALSVLAPE 236

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP---SNAHPAVFQSITKKVVVPTQED 299
           G L ++SFHSLEDR+VK+F   ++ K M V   +P   S  +  +   I  K ++P++ +
Sbjct: 237 GRLSIISFHSLEDRMVKQFM-KKNSKGMDVPKGLPILESELNKNIPLKIIGKAIMPSEAE 295

Query: 300 VAFNRRSRSAKLR 312
           +  N RSRSA LR
Sbjct: 296 IEANPRSRSAVLR 308


>gi|152988306|ref|YP_001350328.1| S-adenosyl-methyltransferase MraW [Pseudomonas aeruginosa PA7]
 gi|262825003|sp|A6VB93|RSMH_PSEA7 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|150963464|gb|ABR85489.1| S-adenosyl-methyltransferase MraW [Pseudomonas aeruginosa PA7]
          Length = 313

 Score =  202 bits (514), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 123/305 (40%), Positives = 184/305 (60%), Gaps = 16/305 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQE 76
           H+ VLLE+ ++ L P      LD TFG GG+SR+  +    G  ++  D+DP A+  G+ 
Sbjct: 7   HITVLLEEAVSALAPREDGCYLDGTFGRGGHSRALLEKLGTGGRLLGFDKDPQAIQTGK- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            +     +F + Q +F++L D V  +G    VDGV+ DLGVSS Q+D  +RGFSF   GP
Sbjct: 66  ALAAEDGRFVIVQRSFAELGDEVRARGLEGRVDGVLLDLGVSSPQLDDPERGFSFLNDGP 125

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+   GISA++ +  A  +++ R+    GEE+ A R+A AIV+RRQ  PF+ T DL
Sbjct: 126 LDMRMNPGQGISAAEFIASAAEEEIARVFKEYGEERFAKRMARAIVQRRQERPFERTADL 185

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + +I       +  + +PATR+FQ LRI VNNE+ +L +GL +A ++L  GG L+V+SFH
Sbjct: 186 AEVITVANPAWEKGK-NPATRAFQGLRIHVNNELGDLERGLDAALESLAVGGRLVVISFH 244

Query: 252 SLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVP---TQEDVAFNRRSR 307
           SLEDR+VK F    + G+   +   +P  +   VF+   K +  P   ++ ++  N RSR
Sbjct: 245 SLEDRIVKLFMRKHAKGEADNLPRDLPIRSK--VFEPRLKLLGKPQYASEAELKANPRSR 302

Query: 308 SAKLR 312
           SA +R
Sbjct: 303 SAVMR 307


>gi|303250489|ref|ZP_07336686.1| S-adenosyl-methyltransferase MraW [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|303251832|ref|ZP_07338003.1| S-adenosyl-methyltransferase MraW [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307249133|ref|ZP_07531140.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
 gi|307249209|ref|ZP_07531206.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|307251531|ref|ZP_07533438.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|307260461|ref|ZP_07542156.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
 gi|302649262|gb|EFL79447.1| S-adenosyl-methyltransferase MraW [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|302650477|gb|EFL80636.1| S-adenosyl-methyltransferase MraW [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306854421|gb|EFM86617.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
 gi|306858733|gb|EFM90792.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|306860995|gb|EFM93001.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|306869864|gb|EFN01646.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
          Length = 313

 Score =  202 bits (514), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 125/313 (39%), Positives = 182/313 (58%), Gaps = 18/313 (5%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPF 69
           ++ T+  H+ VLL + +  L   P  + +D TFG GG+SR      S    +IA DRDP 
Sbjct: 1   MNDTVHKHITVLLHEAVDGLAIKPNGIYIDGTFGRGGHSRLILSKLSEQGRLIATDRDPR 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGF 125
           A++    T+ D +  F +    FS + D     G    +DG++ DLGVSS Q+D  +RGF
Sbjct: 61  AIAEAN-TIDDTR--FQIVHTAFSAIPDVCEQLGLTGKIDGILLDLGVSSPQLDDAERGF 117

Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF + GPLDMRM  + G+SA++ + Q +  DL  +L   GEE+ A RIA A+V   +SA 
Sbjct: 118 SFMRDGPLDMRMDTTKGLSAAEWLAQVSADDLAWVLKTFGEERFAKRIAQAVVSYNKSAT 177

Query: 185 --FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
                T  L+ +I   V F K+   HPATRSFQA+RIF+N+E++EL + L+SA   L   
Sbjct: 178 DKISRTLQLAQIIADAVPF-KDKHKHPATRSFQAIRIFINSELDELEKALQSALSVLAPE 236

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP---SNAHPAVFQSITKKVVVPTQED 299
           G L ++SFHSLEDR+VK+F   ++ K M V   +P   S  +  +   I  K ++P++ +
Sbjct: 237 GRLSIISFHSLEDRMVKQFM-KKNSKGMDVPKGLPILESELNKNIPLKIIGKAIMPSEAE 295

Query: 300 VAFNRRSRSAKLR 312
           +  N RSRSA LR
Sbjct: 296 IEANPRSRSAVLR 308


>gi|325923945|ref|ZP_08185535.1| S-adenosyl-methyltransferase MraW [Xanthomonas gardneri ATCC 19865]
 gi|325545571|gb|EGD16835.1| S-adenosyl-methyltransferase MraW [Xanthomonas gardneri ATCC 19865]
          Length = 352

 Score =  202 bits (514), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 124/299 (41%), Positives = 175/299 (58%), Gaps = 11/299 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HVPVL  +V+  L        LD TFG GG++R   +    G  ++ +D+DP A++  ++
Sbjct: 18  HVPVLYTQVLDGLQVIENGTYLDGTFGRGGHARGVLQHLGPGGRLLVMDKDPEAIAVAEQ 77

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
                  + S+ + +F+ L   V    VDG++ DLGVSS Q+D   RGFSF K GPLDMR
Sbjct: 78  AF-GGDARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLDVAGRGFSFGKDGPLDMR 136

Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M    G SA++ +  A+ +++  +L   GEE+Q+ RIA AIV RR   P   T  L+ LI
Sbjct: 137 MDPDVGQSAAEWLAHASDREIADVLWTYGEERQSRRIARAIVARRTEQPLLRTAQLAELI 196

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
             +V    +++ HPATRSFQA+RI++N E+++L  GL +A  ALK GG L V+SFHSLED
Sbjct: 197 -ASVMPRGDSKTHPATRSFQAIRIYINRELDDLEAGLDAALGALKPGGRLAVISFHSLED 255

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           R+VK+F A R  K       +P  A P V   Q +T  V     E ++ N R+RSA LR
Sbjct: 256 RIVKQFMA-RYAKAPPSNRRLP-EAQPFVPTLQLVTGAVKADFDE-LSVNPRARSAVLR 311


>gi|281212537|gb|EFA86697.1| hypothetical protein PPL_00499 [Polysphondylium pallidum PN500]
          Length = 919

 Score =  202 bits (514), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 117/315 (37%), Positives = 176/315 (55%), Gaps = 28/315 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H PVL  +VI  L   PG   +D TFG GG++        +  VIA DRDP      +  
Sbjct: 606 HKPVLFREVIDRLRLKPGSCYIDCTFGLGGHTTGILDRQPDCYVIAFDRDPHVFELTKHL 665

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKG-----VDGVVFDLGVSSMQIDCGDRGFSFQKS-- 130
            + YK++       FS++   + + G     +DG++FD GVSS+Q+D  +RGFSF+K   
Sbjct: 666 RQKYKDRLITIHGEFSRMSSLLAENGLSDLPIDGILFDFGVSSLQLDDPERGFSFRKDLY 725

Query: 131 GPLDMRMS---CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           GPLDMRM+    S +SA D+VN  ++K L  I+   GEE+   +IA  IV RR   P +T
Sbjct: 726 GPLDMRMNKDDSSTLSAFDIVNTFSIKRLRDIMYFYGEERHTKKIAEEIVLRRSIEPIRT 785

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T +L ++I+K + +   N+    +R F+ALR++VN+E +E+ +GL  AEK L+  G L+ 
Sbjct: 786 TNELVAIIEKCIPYPAANK--SISRIFRALRMYVNSETQEVKKGLLEAEKVLQPNGELVA 843

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +SFHS+EDR+VKKFF SR  +      + P    P          V    +++ +N RS+
Sbjct: 844 ISFHSIEDRIVKKFFQSRKNQSF----VFPDGDDP----------VYAAPDELEWNPRSK 889

Query: 308 SAKLRAGMRTVERSI 322
            A LR+  RT  + +
Sbjct: 890 PAILRSAQRTKSKPL 904


>gi|294627718|ref|ZP_06706300.1| S-adenosyl-methyltransferase MraW [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292598070|gb|EFF42225.1| S-adenosyl-methyltransferase MraW [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 347

 Score =  202 bits (514), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 120/297 (40%), Positives = 173/297 (58%), Gaps = 7/297 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HVPVL  +V+  L        LD TFG GG++R   +    G  ++ +D+DP A++  + 
Sbjct: 18  HVPVLYTQVLDGLQVTENGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDPDAIAVAEH 77

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
           +      + S+ + +F+ L   V    VDG++ DLGVSS Q+D   RGFSF K GPLDMR
Sbjct: 78  SF-GGDARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLDVAGRGFSFGKDGPLDMR 136

Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M   SG SA++ + QA+ +++  +L   GEE+Q+ RIA AIV RR   P   T  L+ LI
Sbjct: 137 MDPDSGQSAAEWLAQASDREIADVLWTYGEERQSRRIARAIVARRAEQPLLRTAQLADLI 196

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
             +V    +++ HPATRSFQA+RI +N E+ +L  GL +A  ALK GG L V+SFHSLED
Sbjct: 197 -ASVMPRGDSKTHPATRSFQAIRIHINRELADLEAGLDAALGALKPGGRLAVISFHSLED 255

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           R+VK+F A  +    + R +  +    A  Q ++  +     E +  N R+RSA LR
Sbjct: 256 RIVKQFMARYAKAPPSNRRLPEAQPFVATLQLVSGAIKADDAE-LHVNPRARSAVLR 311


>gi|315924810|ref|ZP_07921027.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315621709|gb|EFV01673.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 314

 Score =  202 bits (514), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 124/309 (40%), Positives = 179/309 (57%), Gaps = 12/309 (3%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MG--SNVIALDRDPFAVSCG 74
           G H+ VL ++ IA L    G + +D T G GG+S + C+ +G    +I +D+D +A+S  
Sbjct: 7   GKHITVLRDEAIAGLGIVRGGIYVDCTLGGGGHSEAICRALGHQGTLIGIDQDQYALSRA 66

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +  +R  +      +  F  L+  + + G+   DG +FDLGVSS Q D  +RGFS+   G
Sbjct: 67  ETRLRSQRCHKIFVRNNFVDLETVLDNAGIEKADGFLFDLGVSSFQFDQAERGFSYHHDG 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  S  ++A  VVN  + +DL RIL   GEEK + R+A AIVK R  AP   T  
Sbjct: 127 PLDMRMDRSRPLTAERVVNTYSQEDLKRILWGYGEEKMSGRVAAAIVKARAQAPITRTGQ 186

Query: 191 LSSLIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I K  Y  K  R  HPA ++FQALRI VN E+  L   L++A   L  GG + V++
Sbjct: 187 LAEII-KAAYPEKLKRKGHPAKKTFQALRIEVNGELRILNDALKAAIDRLNPGGRICVIT 245

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSR 307
           FHSLED+LVK+ F  ++   +    + P      V   + IT+K +VP++ ++A NRR+R
Sbjct: 246 FHSLEDQLVKRLFTEQADPCICPPEL-PQCVCGRVPTIKKITRKPIVPSETELAANRRAR 304

Query: 308 SAKLRAGMR 316
           SAKLR   R
Sbjct: 305 SAKLRIAER 313


>gi|194290821|ref|YP_002006728.1| s-adenosyl-methyltransferase mraw [Cupriavidus taiwanensis LMG
           19424]
 gi|263446166|sp|B3R6W7|RSMH_CUPTR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|193224656|emb|CAQ70667.1| S-adenosyl-dependent methyl transferase [Cupriavidus taiwanensis
           LMG 19424]
          Length = 329

 Score =  202 bits (513), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 127/315 (40%), Positives = 192/315 (60%), Gaps = 35/315 (11%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  V +D TFG GG+SR+   ++G +  ++A D+DP A++    
Sbjct: 14  HRTVLLDEAVDALVWRPDGVYVDGTFGRGGHSRAVLARLGPDGALVAFDKDPAAIAEAG- 72

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           T++D +  FS+  A+F+ + + +  +G V GV+ DLG+SS QID   RGFSF+  GPLDM
Sbjct: 73  TIKDAR--FSIEHASFAAMAERLAGRGHVAGVLLDLGISSPQIDEAARGFSFRFEGPLDM 130

Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTTQD 190
           RM  + GI+A+  + QA+ +D+ R++   GEE+ A +IA AIV RR  +    P  TT D
Sbjct: 131 RMDTTRGITAAQWLAQADEQDIARVIRDYGEERFAVQIAKAIVARRSESGDGGPVATTAD 190

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L++L+ K V   +  +  PATR+FQALRI VN E+E+L +GL++A   L+ GG L+V+SF
Sbjct: 191 LAALVAKAVKTREKGQ-DPATRTFQALRIHVNQELEDLERGLKAAYDLLQVGGRLVVISF 249

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSITKKVVVPT------------Q 297
           HSLEDR+VK+F A+         H  P  +A PA+ ++  +   +P              
Sbjct: 250 HSLEDRIVKRFMAA---------HARPQQDADPALRRAPLRAADLPQPTLRLLGRYKPGA 300

Query: 298 EDVAFNRRSRSAKLR 312
           E+VA N R+RSA +R
Sbjct: 301 EEVAANPRARSAVMR 315


>gi|310828121|ref|YP_003960478.1| hypothetical protein ELI_2533 [Eubacterium limosum KIST612]
 gi|308739855|gb|ADO37515.1| hypothetical protein ELI_2533 [Eubacterium limosum KIST612]
          Length = 311

 Score =  202 bits (513), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 121/304 (39%), Positives = 174/304 (57%), Gaps = 13/304 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H  VLL + +  L   P    +D T G GG+S   CK  S    +I +D+D FA+     
Sbjct: 5   HTTVLLHETVDGLMIRPDGTYVDGTLGGGGHSELICKRLSADGTLIGIDQDDFALDYAGR 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  Y  +  L +  F  L++ + + GV   DG+++DLGVSS Q D   RGFS+   GPL
Sbjct: 65  RLAPYACRKQLVKNNFVHLKEVLGEAGVSQIDGIIYDLGVSSFQFDDETRGFSYHHDGPL 124

Query: 134 DMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM S + +SA +VVN    + L ++L + GEE+ A RI +AI+K R++ P +TT +LS
Sbjct: 125 DMRMDSGAELSAYEVVNAYPPERLKKVLQVYGEERFAGRIVNAIIKERETKPIETTLELS 184

Query: 193 SLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
            LI K  Y +K      HPA +SFQA+R+ VN+E++ L     +  +ALK GG + +++F
Sbjct: 185 ELI-KAAYPAKERFKEKHPARKSFQAIRLEVNHELDILEDAFSAGIEALKPGGRMCIITF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+VK FF  +                  P V + IT+K V+P  E++  NRRSRS
Sbjct: 244 HSLEDRIVKHFFKDKQNPCTCPPEFPACVCGKKPEV-RIITRKPVLPAPEEIEANRRSRS 302

Query: 309 AKLR 312
           AKLR
Sbjct: 303 AKLR 306


>gi|159038986|ref|YP_001538239.1| S-adenosyl-methyltransferase MraW [Salinispora arenicola CNS-205]
 gi|262826354|sp|A8LX88|RSMH_SALAI RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|157917821|gb|ABV99248.1| S-adenosyl-methyltransferase MraW [Salinispora arenicola CNS-205]
          Length = 372

 Score =  202 bits (513), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 120/310 (38%), Positives = 179/310 (57%), Gaps = 11/310 (3%)

Query: 18  GDHVPVLLEKVIALLNPAPGK----VILDATFGAGGYSRSFCKMGSN--VIALDRDPFAV 71
           G HVPVLLE+ + LL PA G+    V +DAT G GG++ +         ++ LDRD  A+
Sbjct: 10  GAHVPVLLERCLELLAPALGRAGRTVYVDATLGLGGHAEAVLATHPQTMLVGLDRDTEAL 69

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQ 128
           +  +  +  + ++  L  A + +L D +   G   VDG++FDLGVSS+Q+D  DRGF++ 
Sbjct: 70  AHARVRLARFADRVHLEHAVYDELPDVLDRLGHPVVDGILFDLGVSSLQLDAPDRGFAYA 129

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           +  PLDMRM  + G++A +VVN     DL R+L + GEEK A RIA AIV+ R+  P  +
Sbjct: 130 QDAPLDMRMDQTRGLTAEEVVNTYPHPDLARVLRVYGEEKFAPRIASAIVRERERDPITS 189

Query: 188 TQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           +  L+ L+++T+   ++    HPA R+FQALRI VN E+  L   L +A   L   G L+
Sbjct: 190 SARLAELVRQTIPAPARRTGGHPAKRTFQALRIEVNRELAALETALPAALDRLTIEGRLV 249

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+S+HSLEDRL K   A R      V   +        F+ +++   +P + +VA N R+
Sbjct: 250 VLSYHSLEDRLTKVALADRVRSKGPVDLPVELPGTGPTFRLLSRGAELPGEAEVAMNPRA 309

Query: 307 RSAKLRAGMR 316
            S +LRA  R
Sbjct: 310 ASVRLRAAER 319


>gi|149927124|ref|ZP_01915381.1| S-adenosyl-methyltransferase [Limnobacter sp. MED105]
 gi|149824063|gb|EDM83284.1| S-adenosyl-methyltransferase [Limnobacter sp. MED105]
          Length = 323

 Score =  202 bits (513), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 125/311 (40%), Positives = 185/311 (59%), Gaps = 16/311 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
           +H+PVLL+  +  L   P  + LD TFG GG+SR+  +  S    ++ALDRDP AV    
Sbjct: 5   EHIPVLLQPTVDALLHTPDGLYLDCTFGRGGHSRALLEKLSAQGQLVALDRDPQAVQAMG 64

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E ++D +  F   ++ F+ L+  +   G   VDGV+ D+GVSS QID  +RGFSF++ GP
Sbjct: 65  E-IKDSR--FRGVRSAFADLESALDSLGIDQVDGVLMDIGVSSPQIDQAERGFSFRRDGP 121

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM   +G SA+D + +A+ +++  ++   GEE+ A +IA AIV RR   P  TT DL
Sbjct: 122 LDMRMDPQTGESAADFLARADAREIKEVIKNYGEERFAVQIATAIVARRTERPITTTLDL 181

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++   V   +  +  PATR+FQALRI VN E+ +L QGL +A K L+ GG L V+SFH
Sbjct: 182 AQIVAGAVRTREPGQ-DPATRTFQALRIHVNQELAQLEQGLTAAFKRLRVGGRLAVISFH 240

Query: 252 SLEDRLVKKF---FASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SLEDR+ K+F    A+   +  A    +P      + + + +  + PT+E+   N RSRS
Sbjct: 241 SLEDRITKQFIEKLANPKSQQDARLRKLPLPEPTPLMKKLDR--IKPTKEECELNPRSRS 298

Query: 309 AKLRAGMRTVE 319
           + LR   +  E
Sbjct: 299 SVLRVAEKLAE 309


>gi|307132591|ref|YP_003884607.1| 16S rRNA m(4)C1402 methyltransferase [Dickeya dadantii 3937]
 gi|306530120|gb|ADN00051.1| 16S rRNA m(4)C1402 methyltransferase [Dickeya dadantii 3937]
          Length = 313

 Score =  202 bits (513), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 126/309 (40%), Positives = 187/309 (60%), Gaps = 17/309 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN     + +D TFG GG+SR    ++G    ++A+DRDP AV+    
Sbjct: 7   HTTVLLDEAVNGLNIRSNGIYIDGTFGRGGHSRLILSRLGPEGRLLAIDRDPQAVAVAN- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           T+ D +  FS+    FS+L +YV ++G    +DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 66  TIDDAR--FSIIHGPFSELAEYVDERGLTGKIDGILLDLGVSSPQLDDPERGFSFMRDGP 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G SA++ + +A  +D+  +L   GEE+ A RIA AIV+R +  P   T+ L
Sbjct: 124 LDMRMDPTRGQSAAEWLMKAEAEDIAWVLKTFGEERFAKRIARAIVERNRVEPLTRTKAL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI       + ++ HPATRSFQA+RI++N+E+EE+ + L  A + L   G L V+SFH
Sbjct: 184 AELIAAASPIREKHK-HPATRSFQAIRIYINSELEEIERALDGALQVLAPEGRLSVISFH 242

Query: 252 SLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKV--VVPTQEDVAFNRRSR 307
           SLEDR+VK+F    SR  +V A   +          Q++ K V  ++P  E+VA N R+R
Sbjct: 243 SLEDRIVKRFIRQHSRGPQVPAGLPLTEEQLRSRGGQTL-KAVGKMMPPDEEVADNPRAR 301

Query: 308 SAKLRAGMR 316
           S+ LR   R
Sbjct: 302 SSVLRFAER 310


>gi|254509146|ref|ZP_05121246.1| S-adenosyl-methyltransferase MraW [Vibrio parahaemolyticus 16]
 gi|219547943|gb|EED24968.1| S-adenosyl-methyltransferase MraW [Vibrio parahaemolyticus 16]
          Length = 316

 Score =  202 bits (513), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 125/309 (40%), Positives = 176/309 (56%), Gaps = 20/309 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H+ VLL + I  L   P  + +D TFG GG+SR+   ++G N  + ++DRDP A++   E
Sbjct: 7   HISVLLHESIDGLAIKPDGIYIDGTFGRGGHSRTILSQLGDNGRLYSIDRDPQAIA---E 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +    +F++    FS + +Y  + G    VDGV+ DLGVSS Q+D  +RGFSF K GP
Sbjct: 64  AAKIDDPRFTIIHGPFSGMAEYAAEYGLVGKVDGVLLDLGVSSPQLDDAERGFSFMKDGP 123

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---PFQTT 188
           LDMRM   SGI  S  + +A++ D+T ++   GE+K A RIA AIV  R++    P   T
Sbjct: 124 LDMRMDPTSGIPVSQWLMEADLDDITWVIREFGEDKHARRIAKAIVAYRENEENEPLTRT 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ LI      S   + HPATR+FQA RI++N+E+EE+   L+ A   L   G L V+
Sbjct: 184 GQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAASILAPEGRLSVI 243

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSN-----AHPAVFQSITKKVVVPTQEDVAFN 303
           SFHSLEDR+VK+F    S K   V H IP       A  +       K + P++ +V  N
Sbjct: 244 SFHSLEDRMVKRFIRKES-KGPEVPHGIPMTEEQIKALGSANMKPIGKAIKPSKNEVEVN 302

Query: 304 RRSRSAKLR 312
            RSRS+ LR
Sbjct: 303 ARSRSSVLR 311


>gi|227113994|ref|ZP_03827650.1| S-adenosyl-methyltransferase MraW [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 314

 Score =  202 bits (513), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 123/309 (39%), Positives = 185/309 (59%), Gaps = 16/309 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN   G + +D TFG GG+SR    ++G    ++A+DRDP A+   + 
Sbjct: 7   HTTVLLDEAVNGLNIRSGGIYIDGTFGRGGHSRLILSQLGPEGRLLAIDRDPQAIEAAK- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            + D +  FS+    FS + +YV + G    +DGV+ DLGVSS Q+D  +RGFSF + GP
Sbjct: 66  AIDDPR--FSIIHGPFSAMAEYVAELGLTGQIDGVLLDLGVSSPQLDDPERGFSFMRDGP 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G+SA++ + +A   D+  +L   GEE+ A RIA AIV+R +  P   T++L
Sbjct: 124 LDMRMDPTRGLSAAEWLMKAEADDIVWVLKTFGEERFAKRIARAIVERNRLDPMTRTKEL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI       + ++ HPATRSFQA+RI++N+E+EE+ + L  A   L   G L V+SFH
Sbjct: 184 AELIAAASPIREKHK-HPATRSFQAIRIYINSELEEIERALEGALSVLAPQGRLSVISFH 242

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSI--TKKVVVPTQEDVAFNRRSR 307
           SLEDR+VK+F    SR  +V A   +          Q++    K ++P++ +VA N R+R
Sbjct: 243 SLEDRIVKRFIRHQSRGPQVPAGLPLTEEQLRSQGGQTLKAVGKKLMPSEAEVAENPRAR 302

Query: 308 SAKLRAGMR 316
           S+ LR   R
Sbjct: 303 SSVLRFAER 311


>gi|27364047|ref|NP_759575.1| 16S rRNA m(4)C1402 methyltranserfase [Vibrio vulnificus CMCP6]
 gi|37678790|ref|NP_933399.1| S-adenosyl-methyltransferase MraW [Vibrio vulnificus YJ016]
 gi|320157431|ref|YP_004189810.1| rRNA small subunit methyltransferase H [Vibrio vulnificus MO6-24/O]
 gi|30173038|sp|Q8DEK2|RSMH_VIBVU RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|42559438|sp|Q7MNV9|RSMH_VIBVY RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|27360164|gb|AAO09102.1| S-adenosyl-methyltransferase MraW [Vibrio vulnificus CMCP6]
 gi|37197531|dbj|BAC93370.1| predicted S-adenosylmethionine-dependent methyltransferase [Vibrio
           vulnificus YJ016]
 gi|319932743|gb|ADV87607.1| rRNA small subunit methyltransferase H [Vibrio vulnificus MO6-24/O]
          Length = 316

 Score =  202 bits (513), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 126/309 (40%), Positives = 176/309 (56%), Gaps = 20/309 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H+ VLL + I  L   P  + +D TFG GG+SR+   K+G +  + ++DRDP A++   E
Sbjct: 7   HISVLLHESIDGLAIKPDGIYIDGTFGRGGHSRTILSKLGEHGRLYSIDRDPQAIA---E 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +    +F++    FS + +Y         VDGV+ DLGVSS Q+D  +RGFSF K GP
Sbjct: 64  AGKIDDPRFTIIHGPFSGMANYAEQYDLVGKVDGVLLDLGVSSPQLDDAERGFSFMKDGP 123

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---PFQTT 188
           LDMRM   SGI  S  + +A++ D+T ++   GE+K A RIA AIV  R+     P   T
Sbjct: 124 LDMRMDPTSGIPVSQWLMEADLDDITWVIREFGEDKHARRIAKAIVAHREDETKEPLTRT 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ LI +    S   + HPATR+FQA RI++N+E+EE+   L+ A   L   G L V+
Sbjct: 184 SQLAKLISEAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAASILAPEGRLSVI 243

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSITKKVV----VPTQEDVAFN 303
           SFHSLEDR+VK+F    S K   V H IP + A      S   K V    +PT +++  N
Sbjct: 244 SFHSLEDRMVKRFMRKES-KGPEVPHGIPLTEAQIKALGSANMKTVGKAIMPTAQEIELN 302

Query: 304 RRSRSAKLR 312
            RSRS+ LR
Sbjct: 303 PRSRSSVLR 311


>gi|114564962|ref|YP_752476.1| S-adenosyl-methyltransferase MraW [Shewanella frigidimarina NCIMB
           400]
 gi|122298407|sp|Q07WH7|RSMH_SHEFN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|114336255|gb|ABI73637.1| S-adenosyl-methyltransferase MraW [Shewanella frigidimarina NCIMB
           400]
          Length = 313

 Score =  202 bits (513), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 118/308 (38%), Positives = 177/308 (57%), Gaps = 15/308 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H+ VLL + +  LN     + +D TFG GG+SR     +G N  +IA+DRDP A+   ++
Sbjct: 7   HLSVLLNETVDGLNIQSDGIYIDGTFGRGGHSRHVLSHLGENGRLIAIDRDPQAIEAAKQ 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              D +  F +    F QL +YV + G    ++GV+ DLGVSS Q+D  +RGFSF + GP
Sbjct: 67  FADDPR--FQIVHGGFGQLAEYVEELGLTGKINGVLLDLGVSSPQLDDAERGFSFLRDGP 124

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G +A+  + +A ++D+  +    GEEK +  IA  I   R+  PF  T+DL
Sbjct: 125 LDMRMDNSQGQTAAQWIARAEIEDMAWVFKTYGEEKNSRHIARCIAADREKTPFLRTKDL 184

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI +     + N+ HPATR FQA+RI++N+E+E++ Q L  A   L   G L V+SFH
Sbjct: 185 ADLIARITKNKERNK-HPATRVFQAIRIYINSELEQIDQALEGALAVLAPQGRLSVISFH 243

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP---SNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SLEDR+VK+F   R  +  +V H +P   +  + +       K + P+  ++  N R+RS
Sbjct: 244 SLEDRMVKRFI-RRHSQGESVPHGLPIMEAELNKSRKLKAVSKALKPSDAELELNPRARS 302

Query: 309 AKLRAGMR 316
           + LR   R
Sbjct: 303 SVLRVAER 310


>gi|188585922|ref|YP_001917467.1| S-adenosyl-methyltransferase MraW [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|262825152|sp|B2A2G4|RSMH_NATTJ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|179350609|gb|ACB84879.1| S-adenosyl-methyltransferase MraW [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 315

 Score =  202 bits (513), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 120/308 (38%), Positives = 178/308 (57%), Gaps = 11/308 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCG 74
           +H PV++EK I LL P   +VI+D T G  G+S     S    G  ++ +D+DP A   G
Sbjct: 4   NHEPVMIEKTIELLKPESAQVIVDGTMGGAGHSLRIINSLPPEGI-LVGIDQDPDAYEAG 62

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +  +  Y  +  +F   F  ++      G   VDG++ DLGVSS Q+D  DRGF++Q++ 
Sbjct: 63  KSLLEAYGNKAKVFNDNFVNIKHICERIGIHYVDGILLDLGVSSYQLDNKDRGFTYQENA 122

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  S  I+AS+VVN  + + L  I+   GEEK A RIA  IV+ RQ     TTQ+
Sbjct: 123 PLDMRMDKSQKITASEVVNTYSEQKLAEIIREYGEEKWAQRIAQFIVQARQDQEINTTQE 182

Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I+  +   ++ +  HPA R+FQALRI VN E++ L   ++   + L+  G  +V++
Sbjct: 183 LVKVIKAAIPKGARKSGPHPAKRTFQALRIHVNGELDSLRTAIQEGIRLLRGKGRFVVIT 242

Query: 250 FHSLEDRLVKKFFASRSGK-VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK+ F   +   V   +  I      A  + +TKK ++P+Q ++  N R+RS
Sbjct: 243 FHSLEDRIVKQEFKKLAQTCVCPTKLPICQCKGEATVKLLTKKPLLPSQGEIEINPRARS 302

Query: 309 AKLRAGMR 316
           AKLRA  R
Sbjct: 303 AKLRAVER 310


>gi|297544901|ref|YP_003677203.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296842676|gb|ADH61192.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 308

 Score =  202 bits (513), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 117/304 (38%), Positives = 172/304 (56%), Gaps = 8/304 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77
           H  VLL++ I  LN  P  + +D T G GG+S    K      +IA+DRD  A+   +E 
Sbjct: 5   HKSVLLKETIEYLNIKPEGIYVDGTLGGGGHSEQILKRLTKGKLIAIDRDLDAIKASKER 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +++YK         F  +++ +   GVD   G++ DLGVSS Q++  +RGFS+ K  PLD
Sbjct: 65  LKNYK-NVKYINNNFKNIKEILKSLGVDKVDGIILDLGVSSFQLEEVERGFSYMKDAPLD 123

Query: 135 MRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM   S  SA DVVN+ + ++L +++   GEEK ASRIA  IVK R+    +TT  L  
Sbjct: 124 MRMDKNSTFSAYDVVNKYSQQELEKVIREYGEEKWASRIAKFIVKEREKGEIKTTFQLVE 183

Query: 194 LIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +I+  +  S   +  HPA R+FQA+RI VN E++ L + +    + L+  G + +++FHS
Sbjct: 184 IIKNAIPASARRKGPHPAKRTFQAIRIEVNEELKGLGKAIEDMVEVLRGKGRIAIITFHS 243

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK  F           +M        V + ITKK VVP++E++  N RSRSAKLR
Sbjct: 244 LEDRIVKNTFKKLENPCTCPPNMPCICGKKPVVKIITKKPVVPSKEEIETNSRSRSAKLR 303

Query: 313 AGMR 316
              +
Sbjct: 304 VAEK 307


>gi|145297477|ref|YP_001140318.1| S-adenosyl-methyltransferase MraW [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|263446607|sp|A4SI48|RSMH_AERS4 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|142850249|gb|ABO88570.1| S-adenosyl-methyltransferase MraW [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 312

 Score =  201 bits (512), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 125/311 (40%), Positives = 180/311 (57%), Gaps = 14/311 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQ 75
           +H+ VLL + +  L   P  + +D TFG GG+SR   + +G N  +IA+DRDP A++   
Sbjct: 6   EHITVLLHEAVEGLAIKPDGIYVDGTFGRGGHSRLILQHLGPNGRLIAIDRDPQAIA--- 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           E  +    +F +    FS +  Y+ ++G    VDG + DLGVSS Q+D  +RGFSF K G
Sbjct: 63  EAAKIQDPRFEIVHGPFSGIVSYLDERGLLGKVDGFLLDLGVSSPQLDDAERGFSFMKDG 122

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM   SG SA+  + +A+V D+  +L   GEE+ A +IA AIV  R + P+  T+ 
Sbjct: 123 PLDMRMDPTSGQSAAQWLARADVDDIAWVLKTFGEERFAKKIARAIVHDRVTEPYVRTRQ 182

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ +I + V  SK    H ATRSFQA+RI++N+E++E+   L  A +AL   G L V+SF
Sbjct: 183 LAEMIAR-VNPSKEKGKHAATRSFQAIRIYINSELDEIETALNGALQALAPEGRLSVISF 241

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK--KVVVPTQEDVAFNRRSRS 308
           HSLEDRLVK F           R +  + A  A  + +    K + P++ +V  N RSRS
Sbjct: 242 HSLEDRLVKHFIRKHEKGPEVPRGIPLTEAQLAGGRKLKSVGKALKPSEHEVTENSRSRS 301

Query: 309 AKLRAGMRTVE 319
           + LR   R  E
Sbjct: 302 SVLRVAQRLAE 312


>gi|16078578|ref|NP_389397.1| S-adenosyl-methyltransferase MraW [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221309385|ref|ZP_03591232.1| S-adenosyl-methyltransferase MraW [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221313712|ref|ZP_03595517.1| S-adenosyl-methyltransferase MraW [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221318634|ref|ZP_03599928.1| S-adenosyl-methyltransferase MraW [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221322908|ref|ZP_03604202.1| S-adenosyl-methyltransferase MraW [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|1730600|sp|Q07876|RSMH_BACSU RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|1122760|emb|CAA92525.1| unknown [Bacillus subtilis subsp. subtilis str. 168]
 gi|2633885|emb|CAB13387.1| S-adenosyl-dependent methyltransferase active on membrane-located
           substrates [Bacillus subtilis subsp. subtilis str. 168]
          Length = 311

 Score =  201 bits (512), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 120/303 (39%), Positives = 176/303 (58%), Gaps = 11/303 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H  VLL + +  LN  P    +D T G  G+S    +  S    +IA D+D  A+   +E
Sbjct: 4   HKTVLLRETVDGLNIKPDGTYVDCTLGGAGHSTYLLQQLSEKGRLIAFDQDDTALQHAKE 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + DYK Q  L ++ F  L++Y+ ++GV   DG++FDLGVSS Q+D  +RGFS+    PL
Sbjct: 64  VLSDYKGQLILIKSNFRYLKEYLNEQGVTEVDGILFDLGVSSPQLDTPERGFSYHHDAPL 123

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  S  +SA +VVN+   +DL RI    GEEK + +IA  I + R  +P QTT  L 
Sbjct: 124 DMRMDQSATLSAKEVVNEWRYEDLVRIFFKYGEEKFSKQIARKIEEARMKSPIQTTGQLV 183

Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            LI+  +   ++ +  HPA R FQA+RI VN+E+    + L  A + LK GG + V++FH
Sbjct: 184 DLIKDAIPAPARRSGGHPAKRVFQAIRIAVNDELRVFEEALEQAIEVLKPGGRVSVITFH 243

Query: 252 SLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+ K  F  +S   ++     +IP    P + + IT+K +  +QE++  N R+RSA
Sbjct: 244 SLEDRICKTTFKEKSSLPELPPGLPVIPEEFEPEL-KLITRKPITASQEELEENNRARSA 302

Query: 310 KLR 312
           KLR
Sbjct: 303 KLR 305


>gi|317493287|ref|ZP_07951709.1| S-adenosyl-methyltransferase MraW [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316918680|gb|EFV40017.1| S-adenosyl-methyltransferase MraW [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 314

 Score =  201 bits (512), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 126/314 (40%), Positives = 186/314 (59%), Gaps = 21/314 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMG--SNVIALDRDPFAVSCGQE 76
           H  VLL++ +  LN     + +D TFG GG+SR    ++G    ++A+DRDP A++   E
Sbjct: 8   HKTVLLDEAVNGLNLRSNGIYIDGTFGRGGHSRLILSQLGPEGRLLAIDRDPQAIAAAAE 67

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  +FS+    FS +  YV + G    ++GV+ DLGVSS Q+D  +RGFSF + GP
Sbjct: 68  IT---DPRFSIIHGPFSDMATYVRELGLEGQINGVLLDLGVSSPQLDDAERGFSFMRDGP 124

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G+SA++ + +A  +D+  +L   GEE+ A RIA AIV+R +  P   T +L
Sbjct: 125 LDMRMDPTRGLSAAEWLMKAEEEDIAWVLKTFGEERFAKRIARAIVERNRLEPMTRTHEL 184

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           ++LI     F + ++ HPATRSFQA+RI++N+E+EE+ + L  A + L   G L V+SFH
Sbjct: 185 ATLIANASPFREKHK-HPATRSFQAIRIYINSELEEIERALNGALEILSPEGRLSVISFH 243

Query: 252 SLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVVV----PTQEDVAFNRR 305
           SLEDR+VK+F    SR  +V A    IP        Q   K   +    P+ ++V+ N R
Sbjct: 244 SLEDRIVKQFIRHHSRGPQVPA---GIPLTEAQLRSQGGRKLKALGKMKPSSDEVSANPR 300

Query: 306 SRSAKLRAGMRTVE 319
           +RS+ LR   RTVE
Sbjct: 301 ARSSVLRFAERTVE 314


>gi|197334561|ref|YP_002157005.1| S-adenosyl-methyltransferase MraW [Vibrio fischeri MJ11]
 gi|263504510|sp|B5FB43|RSMH_VIBFM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|197316051|gb|ACH65498.1| S-adenosyl-methyltransferase MraW [Vibrio fischeri MJ11]
          Length = 316

 Score =  201 bits (512), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 128/313 (40%), Positives = 178/313 (56%), Gaps = 20/313 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           HV VLL + I  L   P  + +D TFG GG+SR    ++G N  + ++DRDP A++  + 
Sbjct: 7   HVSVLLHESIDGLAIKPDGIYIDGTFGRGGHSRQILSQLGENGRLYSIDRDPQAIAEAK- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           T+ D K  F++    FS L+ YV +      +DGV+ DLGVSS Q+D  +RGFSF K GP
Sbjct: 66  TITDPK--FTIIHGPFSGLKQYVEELELVGKIDGVLLDLGVSSPQLDDAERGFSFMKDGP 123

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---PFQTT 188
           LDMRM   SGI  S  + +A+V+D+T ++   GE+K A RIA  IV  R++    P   T
Sbjct: 124 LDMRMDPTSGIPVSQWLQEADVEDITWVIREFGEDKHAWRIAKGIVAYRENEENEPLTRT 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ LI +    S   + HPATR+FQA RI++N+E++E+   L+ A   L   G L V+
Sbjct: 184 SQLAKLISEVAPKSFKEKKHPATRAFQAFRIYINSELDEIDTALKGALDVLAPEGRLSVI 243

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSN-----AHPAVFQSITKKVVVPTQEDVAFN 303
           SFHSLEDR+VK F    S K   V H +P       A  +       K + PT+ +V  N
Sbjct: 244 SFHSLEDRMVKHFIRKES-KGPQVPHGLPLTEEQIKALGSAKMKPVGKAIKPTKNEVDVN 302

Query: 304 RRSRSAKLRAGMR 316
            RSRS+ LR   R
Sbjct: 303 VRSRSSVLRIAER 315


>gi|254491294|ref|ZP_05104474.1| S-adenosyl-methyltransferase MraW [Methylophaga thiooxidans DMS010]
 gi|224463423|gb|EEF79692.1| S-adenosyl-methyltransferase MraW [Methylophaga thiooxydans DMS010]
          Length = 312

 Score =  201 bits (512), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 125/304 (41%), Positives = 184/304 (60%), Gaps = 14/304 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
           +H+PVLL + IA L+       LDATFG GG+SR+   + S+   ++ LDRDP AV+ G+
Sbjct: 7   EHLPVLLNETIAALSVKADGKYLDATFGRGGHSRAILALLSDDGRLLGLDRDPQAVATGK 66

Query: 76  ETMRDYKEQFSLFQATFSQL----QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           + +     +F++    FS++       +    +DG++ D+GVSS Q+D  +RGFSF K G
Sbjct: 67  Q-LAQQDNRFAIEYCAFSEMATAAHARLWQNNIDGILMDIGVSSPQLDDAERGFSFSKDG 125

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+  +GISA++ +  A + D+  ++  LGEE+   RIA AIV+ R   P  TT+ 
Sbjct: 126 PLDMRMNPNAGISAAEWLATAEMDDIAHVIKTLGEERYGKRIARAIVETRDENPITTTKQ 185

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ L+ K    S+    HPATR+FQA+RIF+NNE+EEL   L  A   L  GG L+V+SF
Sbjct: 186 LADLVDKASP-SREKHKHPATRTFQAIRIFINNELEELTLALEQALDVLAVGGRLVVISF 244

Query: 251 HSLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+VK+FF   +R     A   +     +P +   I  K +  ++ ++A N R+RS
Sbjct: 245 HSLEDRIVKRFFRDEARGDDFPAHFPVTVEQLNPRL--KIIGKAIKASETELADNPRARS 302

Query: 309 AKLR 312
           A LR
Sbjct: 303 AVLR 306


>gi|330828037|ref|YP_004390989.1| ribosomal RNA small subunit methyltransferase H [Aeromonas veronii
           B565]
 gi|328803173|gb|AEB48372.1| Ribosomal RNA small subunit methyltransferase H [Aeromonas veronii
           B565]
          Length = 312

 Score =  201 bits (512), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 128/312 (41%), Positives = 184/312 (58%), Gaps = 16/312 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQ 75
           +H+ VLL + +  L   P  V +D TFG GG+SR   + +G N  +IA+DRDP A++   
Sbjct: 6   EHITVLLHEAVEGLAIKPDGVYVDGTFGRGGHSRLILQHLGPNGRLIAIDRDPQAIA--- 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           E  +    +F +    FS +  Y+ ++G    VDG + DLGVSS Q+D  +RGFSF K G
Sbjct: 63  EAAKIQDPRFEIVHGPFSGIASYLDERGLLGKVDGFLLDLGVSSPQLDDAERGFSFMKDG 122

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM   SG SA++ + +A+V D+  +L   GEE+ A +IA AIV  R + P+  T+ 
Sbjct: 123 PLDMRMDPTSGQSAAEWLAKADVDDIAWVLKTFGEERFAKKIARAIVHDRVTEPYVRTRQ 182

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ +I + V  SK    H ATRSFQA+RI++N+E++E+   L  A + L   G L V+SF
Sbjct: 183 LAEMIAR-VNPSKEKGKHAATRSFQAIRIYINSELDEIETALNGALEVLAPHGRLSVISF 241

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSITK--KVVVPTQEDVAFNRRSR 307
           HSLEDRLVK F   +  K   V + IP + A  A  + +    K + P+  +V+ N RSR
Sbjct: 242 HSLEDRLVKHFI-RKHEKGPEVPYGIPLTEAQLAGGRKLKSVGKALKPSDHEVSENSRSR 300

Query: 308 SAKLRAGMRTVE 319
           S+ LR   R  E
Sbjct: 301 SSVLRVAERLAE 312


>gi|262273821|ref|ZP_06051634.1| S-adenosyl-methyltransferase MraW [Grimontia hollisae CIP 101886]
 gi|262222236|gb|EEY73548.1| S-adenosyl-methyltransferase MraW [Grimontia hollisae CIP 101886]
          Length = 317

 Score =  201 bits (512), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 127/316 (40%), Positives = 187/316 (59%), Gaps = 21/316 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76
           H+ VLL + I  L   P  + +D TFG GG++R   + +G N  + ++DRDP A+   +E
Sbjct: 7   HISVLLHESIDGLALKPDGIYVDGTFGRGGHTREILRRLGENGRLYSIDRDPQAI---EE 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +    +F++    FS +Q Y+  +G    +DGV+ DLGVSS Q+D  +RGFSF + GP
Sbjct: 64  AGKIDDPRFNIIHGPFSGIQQYMEARGLSGKIDGVLLDLGVSSPQLDDPERGFSFMRDGP 123

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---PFQTT 188
           LDMRM   SGI AS  + +A+  D+  +L   GEE+ A RIA AIV  R+     P   T
Sbjct: 124 LDMRMDPTSGIPASQWLAEADADDIAWVLKEFGEERFAKRIARAIVAHREDETKEPLTRT 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L++LI  +V  S++ + HPATR FQA+RI++N+E+EE+   ++ A + L  GG L ++
Sbjct: 184 LQLANLI-ASVSPSRDRKKHPATRCFQAIRIYINSELEEIETAMQGALEVLAPGGRLSII 242

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHP--AVFQSITK---KVVVPTQEDVAFN 303
           SFHSLEDRLVK+F   +S K   V H +P       A+ Q+  K   K + P+  +V+ N
Sbjct: 243 SFHSLEDRLVKRFIRKQS-KGPDVPHGVPLTEEQIRALGQAKMKPVGKALKPSDVEVSDN 301

Query: 304 RRSRSAKLRAGMRTVE 319
            RSRS+ LR   +  E
Sbjct: 302 TRSRSSVLRVAEKLGE 317


>gi|291616264|ref|YP_003519006.1| MraW [Pantoea ananatis LMG 20103]
 gi|291151294|gb|ADD75878.1| MraW [Pantoea ananatis LMG 20103]
 gi|327392716|dbj|BAK10138.1| S-adenosyl-methyltransferase MraW [Pantoea ananatis AJ13355]
          Length = 313

 Score =  201 bits (512), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 126/310 (40%), Positives = 185/310 (59%), Gaps = 17/310 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN     + +D TFG GG+SR    ++G++  +IA+DRDP A++   E
Sbjct: 7   HTTVLLDEAVNGLNIKEDGIYIDGTFGRGGHSRLILAQLGASGKLIAIDRDPQAIAAAAE 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            ++D +  FS+    FS L DYV ++     +DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 67  -IKDPR--FSIVHGPFSALADYVAERELVGRIDGILLDLGVSSPQLDDAERGFSFMRDGP 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G SA++ + QA   D+  +L   GEE+ A RIA AIV+R +  P   T++L
Sbjct: 124 LDMRMDPTRGHSAAEWLKQAEEADIAFVLKTYGEERFAKRIARAIVERNREQPMTRTKEL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + +I       K+   HPATRSFQA+RI++N+E+EE+   L+ A + L   G L V+SFH
Sbjct: 184 AEVIAAATPI-KDKFKHPATRSFQAIRIWINSELEEIDTALKGAVEVLAPQGRLSVISFH 242

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPS----NAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           SLEDRLVK+F   +S      R +  +    NA      ++  K +VP   +V  N R+R
Sbjct: 243 SLEDRLVKRFMRDQSRGPQVPRGLPMTEQQLNALGGRQLTLLGK-MVPGDAEVKENPRAR 301

Query: 308 SAKLRAGMRT 317
           S+ LR   RT
Sbjct: 302 SSVLRIAERT 311


>gi|307244811|ref|ZP_07526910.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|307253765|ref|ZP_07535619.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|307258222|ref|ZP_07539965.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
 gi|306854256|gb|EFM86462.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|306863249|gb|EFM95189.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306867682|gb|EFM99527.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
          Length = 313

 Score =  201 bits (512), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 125/313 (39%), Positives = 182/313 (58%), Gaps = 18/313 (5%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPF 69
           ++ T+  H+ VLL + +  L   P  + +D TFG GG+SR      S    +IA DRDP 
Sbjct: 1   MNDTVHKHITVLLHEAVDGLAIKPNGIYIDGTFGRGGHSRLILSKLSEQGRLIATDRDPR 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGF 125
           A++    T+ D +  F +    FS + D     G    +DG++ DLGVSS Q+D  +RGF
Sbjct: 61  AIAEAN-TIDDTR--FQIEHTAFSAIPDVCEQLGLTGKIDGILLDLGVSSPQLDDAERGF 117

Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF + GPLDMRM  + G+SA++ + Q +  DL  +L   GEE+ A RIA A+V   +SA 
Sbjct: 118 SFMRDGPLDMRMDTTKGLSAAEWLAQVSADDLAWVLKTFGEERFAKRIAQAVVSYNKSAT 177

Query: 185 --FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
                T  L+ +I   V F K+   HPATRSFQA+RIF+N+E++EL + L+SA   L   
Sbjct: 178 NKISRTLQLAQIIADAVPF-KDKHKHPATRSFQAIRIFINSELDELEKALQSALSVLAPE 236

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP---SNAHPAVFQSITKKVVVPTQED 299
           G L ++SFHSLEDR+VK+F   ++ K M V   +P   S  +  +   I  K ++P++ +
Sbjct: 237 GRLSIISFHSLEDRMVKQFM-KKNSKGMDVPKGLPILESELNKNIPLKIIGKAIMPSEAE 295

Query: 300 VAFNRRSRSAKLR 312
           +  N RSRSA LR
Sbjct: 296 IEANPRSRSAVLR 308


>gi|300715300|ref|YP_003740103.1| S-adenosyl-methyltransferase MraW [Erwinia billingiae Eb661]
 gi|299061136|emb|CAX58243.1| S-adenosyl-methyltransferase MraW [Erwinia billingiae Eb661]
          Length = 313

 Score =  201 bits (512), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 126/310 (40%), Positives = 175/310 (56%), Gaps = 15/310 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN     + LD TFG GG+SR    ++G +  + A+DRDP A++   E
Sbjct: 7   HTTVLLDEAVNGLNIKSDGIYLDGTFGRGGHSRLILSQLGEHGRLYAIDRDPQAIAAAAE 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  +F +    FS L DY  + G    +DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 67  IT---DPRFQIIHGPFSALADYADELGLTGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM    G SAS  + QA   D+  +L   GEE+ A RIA AIV+R +  P   T++L
Sbjct: 124 LDMRMDPTKGQSASQWLLQAEESDIAFVLKTFGEERFAKRIARAIVERNREQPMTRTKEL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + +I       K+   HPATRSFQA+RI+VN+E+EE+ Q L+ A  AL   G L V+SFH
Sbjct: 184 ADVIYAATPV-KDKFKHPATRSFQAIRIWVNSELEEIEQALKGALTALAPEGRLSVISFH 242

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV---VVPTQEDVAFNRRSRS 308
           SLEDR+VK+F   +S        +  + A  A       K    ++P  E+V  N R+RS
Sbjct: 243 SLEDRIVKRFMREQSRGPQVPAGIPMTEAQLAKLGGRHLKAFGKMMPGDEEVKENPRARS 302

Query: 309 AKLRAGMRTV 318
           + LR   RT 
Sbjct: 303 SVLRVAERTA 312


>gi|269956076|ref|YP_003325865.1| S-adenosyl-methyltransferase MraW [Xylanimonas cellulosilytica DSM
           15894]
 gi|269304757|gb|ACZ30307.1| S-adenosyl-methyltransferase MraW [Xylanimonas cellulosilytica DSM
           15894]
          Length = 351

 Score =  201 bits (512), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 116/308 (37%), Positives = 181/308 (58%), Gaps = 11/308 (3%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74
           H+PVLLE+ + LL PA   PG V++D T G GG++    +     +V+ +DRDP A+   
Sbjct: 13  HLPVLLERCVDLLAPALAEPGSVLVDCTLGMGGHTEGVLERLPHVHVVGIDRDPQALRLA 72

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVP----DKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
              +  + ++F+   A + ++ D V     D GV GV+ DLGVSS+Q+D   RGF++ + 
Sbjct: 73  AARLARFGDRFTPVHAVYDEIGDVVARLGYDDGVQGVLMDLGVSSLQLDEAGRGFAYAQD 132

Query: 131 GPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM   +G +A+DV+N  +  +LTRIL   GEE+ A +IA +IV+RR   P++ T 
Sbjct: 133 APLDMRMDQTTGPTAADVLNTYDEHELTRILREYGEERFAGKIARSIVRRRAERPWERTA 192

Query: 190 DLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  L++  +   ++    +PA R+FQALRI VN E+E L + + +A +AL  GG ++V 
Sbjct: 193 ELVDLVRACIPAATRKTGGNPAKRTFQALRIEVNGELEVLERAVPAAIEALAVGGRIVVE 252

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           S+HSLEDR+VK+  A  +         +    H A  +++T+        ++A N RS S
Sbjct: 253 SYHSLEDRIVKRAIARGTTSSAPPGLPVEPETHRAYLEALTRGAEEADDAELARNPRSAS 312

Query: 309 AKLRAGMR 316
            +LRA  R
Sbjct: 313 VRLRAAAR 320


>gi|15643635|ref|NP_228681.1| S-adenosyl-methyltransferase MraW [Thermotoga maritima MSB8]
 gi|8134815|sp|Q9WZX6|RSMH_THEMA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|4981407|gb|AAD35954.1|AE001753_10 conserved hypothetical protein [Thermotoga maritima MSB8]
          Length = 299

 Score =  201 bits (512), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 116/309 (37%), Positives = 185/309 (59%), Gaps = 29/309 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77
           H+PV++ +VI  L P   K+ILD T G GG+SR+  +   G  +I +D D   +   +E 
Sbjct: 8   HIPVMVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEK 67

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++++ ++ SLF+ ++ +    +   G   VDG++ DLGVS+ Q+   +RGF+F++  PLD
Sbjct: 68  LKEFSDRVSLFKVSYREADFLLKTLGIEKVDGILMDLGVSTYQLKGENRGFTFEREEPLD 127

Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQ-ASRIAHAIVKRRQSAPFQTTQDLS 192
           MRM   S ++A  V+N+   ++L RI+   GEEK+ A RIA  IV+ R   P  TT DL 
Sbjct: 128 MRMDLESEVTAQKVLNELPEEELARIIFEYGEEKRFARRIARKIVENR---PLNTTLDLV 184

Query: 193 SLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +++ +  Y  +  + H AT++FQA+RI+VN E+E L + L+ AE  L  GG ++V+SF
Sbjct: 185 KAVREALPSYEIRRRKRHFATKTFQAIRIYVNRELENLKEFLKKAEDLLNPGGRIVVISF 244

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDR+VK+ F  R+ K + +               +T+K V P++E++  N R+RS +
Sbjct: 245 HSLEDRIVKETF--RNSKKLRI---------------LTEKPVRPSEEEIRENPRARSGR 287

Query: 311 LRAGMRTVE 319
           LRA  R  E
Sbjct: 288 LRAAERIEE 296


>gi|315181138|gb|ADT88052.1| S-adenosyl-methyltransferase MraW [Vibrio furnissii NCTC 11218]
          Length = 316

 Score =  201 bits (512), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 126/309 (40%), Positives = 176/309 (56%), Gaps = 20/309 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H+ VLL + I  L   P  + +D TFG GG+SR+   ++G N  + ++DRDP A++  Q+
Sbjct: 7   HISVLLHESIDGLAIKPDGIYIDGTFGRGGHSRTILSQLGPNGRLYSIDRDPQAIAEAQK 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  +F++    FS + +Y         VDGV+FDLGVSS Q+D  +RGFSF K GP
Sbjct: 67  I---DDPRFTIVHGPFSGIAEYAARYELVGKVDGVLFDLGVSSPQLDDAERGFSFMKDGP 123

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---PFQTT 188
           LDMRM   SG+  S  + QA++ D+T ++   GE+K A RIA AIV  R++    P   T
Sbjct: 124 LDMRMDPTSGMPVSAWLAQADLDDITWVIREFGEDKHARRIAKAIVAYRENEENEPLTRT 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ LI      S   + HPATR+FQA RI++N+E+EE+   L+ A   L   G L V+
Sbjct: 184 SQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAASILAPQGRLSVI 243

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSN-----AHPAVFQSITKKVVVPTQEDVAFN 303
           SFHSLEDR+VK+F    S K   V H IP       A  +       K + P++ +VA N
Sbjct: 244 SFHSLEDRMVKRFMRKES-KGPEVPHGIPLTQEQIRALGSADLRTVGKAIKPSEHEVAMN 302

Query: 304 RRSRSAKLR 312
            RSRS+ LR
Sbjct: 303 PRSRSSVLR 311


>gi|183599909|ref|ZP_02961402.1| hypothetical protein PROSTU_03430 [Providencia stuartii ATCC 25827]
 gi|188022184|gb|EDU60224.1| hypothetical protein PROSTU_03430 [Providencia stuartii ATCC 25827]
          Length = 316

 Score =  201 bits (511), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 128/314 (40%), Positives = 177/314 (56%), Gaps = 20/314 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76
           HV VLL++ +  LN  P  + +D TFG GG+SR   S       +IA+DRDP A+   QE
Sbjct: 8   HVTVLLDEAVNGLNIKPNGIYIDGTFGRGGHSRLILSQLNEQGRLIAIDRDPEAIKAAQE 67

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  +F +    FS + +YV ++G    +DGV+ DLGVSS Q+D  +RGFSF + GP
Sbjct: 68  I---DDPRFMIKHGPFSAIAEYVEEEGLVGKIDGVLLDLGVSSPQLDDPERGFSFMRDGP 124

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR---QSAPFQTT 188
           LDMRM  + G SA   +  A   D+  +L   GEE+ A RIA AIV+R    +  P   T
Sbjct: 125 LDMRMDPTKGQSAQQWLMNAQADDIAWVLKTFGEERFAKRIAKAIVERNHNPEETPLTRT 184

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           ++L+ LI K     + ++ HPATRSFQA+RI++N+E+EE+ Q L  A   L   G L V+
Sbjct: 185 RELAELIAKVSPIKERHK-HPATRSFQAIRIYINSELEEIEQALEGAVSVLAPEGRLSVI 243

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVV----PTQEDVAFNR 304
           SFHSLEDRLVK+F    S K  +V   IP          + K   V    P+  ++  N 
Sbjct: 244 SFHSLEDRLVKRFIRQNS-KGPSVPAGIPLTEAQIRELGVAKLREVGKMKPSDAEIDENP 302

Query: 305 RSRSAKLRAGMRTV 318
           R+RS+ LR   RT+
Sbjct: 303 RARSSVLRFAQRTL 316


>gi|121606314|ref|YP_983643.1| S-adenosyl-methyltransferase MraW [Polaromonas naphthalenivorans
           CJ2]
 gi|262824843|sp|A1VSU4|RSMH_POLNA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|120595283|gb|ABM38722.1| S-adenosyl-methyltransferase MraW [Polaromonas naphthalenivorans
           CJ2]
          Length = 306

 Score =  201 bits (511), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 130/305 (42%), Positives = 180/305 (59%), Gaps = 13/305 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H  VLL + I  L   P    +DATFG GG+SR      S    V A D+D  A++  Q 
Sbjct: 8   HRTVLLNEAITALQVNPDGHYIDATFGRGGHSRLLLSQLSALGRVTAFDKDLDAIAEAQ- 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
           ++ D +  FS+    F  L D +P   V GV+ DLGVSS QID  +RGFSF+  GPLDMR
Sbjct: 67  SIDDPR--FSIRHQGFMHL-DQMPQASVAGVLMDLGVSSPQIDNPERGFSFRNEGPLDMR 123

Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQTTQDLSSL 194
           M  + G S ++ +  A+++ +T ++   GEE+ A  +A AI +RRQ   P QTT +L+ +
Sbjct: 124 MDTTRGQSVAEWLQDASIEAMTEVIRDYGEERFAGLVARAIDRRRQEHGPLQTTAELADV 183

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           +   V   +  +  PATR+FQALRIF+N E+EEL Q L+++ K L+ GG L+V+SFHSLE
Sbjct: 184 VASAVKTREPGK-DPATRTFQALRIFINAELEELQQALQASLKVLQPGGRLVVISFHSLE 242

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           DR+VK+F A+ S +V   R      A P V Q         ++E+VA N RSRSA +R  
Sbjct: 243 DRIVKQFIAAHSREVYDRRAPF---AAPKVMQLKALGRTKASEEEVAGNPRSRSAVMRVA 299

Query: 315 MRTVE 319
            RT E
Sbjct: 300 ERTGE 304


>gi|311895546|dbj|BAJ27954.1| putative S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Kitasatospora setae KM-6054]
          Length = 322

 Score =  201 bits (511), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 119/308 (38%), Positives = 182/308 (59%), Gaps = 12/308 (3%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCG 74
           H+PV+LE+ +  L PA   PG V++DAT G GG+S +      +V  IA+DRDP A+   
Sbjct: 10  HIPVMLERCLDALAPAISTPGAVVVDATLGLGGHSEALLTRFPDVRLIAVDRDPRALELS 69

Query: 75  QETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            E +  + ++ +L  A + ++    D +    V GV+FDLGVSSMQ+D  DRGF++ +  
Sbjct: 70  AERLARFGDRATLVHAVYDEIPRVLDELDVPEVHGVLFDLGVSSMQLDEADRGFAYSQDA 129

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM    GISA++V+N     DL RIL + GEE+ A +IA A+++ R+  PF  +  
Sbjct: 130 PLDMRMDQTRGISAAEVLNTYGHGDLARILKVYGEERFAGKIASAVLREREREPFTNSAR 189

Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  L++  +   ++    +PA R+FQALRI VN E+E L + +  A  AL  GG ++V+S
Sbjct: 190 LVELVRNAIPAATRRTGGNPAKRTFQALRIEVNGELEVLDRAIPGALDALAVGGRIVVMS 249

Query: 250 FHSLEDRLVKKFF-ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           + SLEDRLVK++F A  +        +IP    P   + +T+   + T+E++  NRR+  
Sbjct: 250 YQSLEDRLVKQYFQAGATSTAPPGLPVIPEELQP-WLKLLTRGAELATEEEIEENRRAAP 308

Query: 309 AKLRAGMR 316
            +LR   R
Sbjct: 309 VRLRVAER 316


>gi|152996635|ref|YP_001341470.1| S-adenosyl-methyltransferase MraW [Marinomonas sp. MWYL1]
 gi|263456400|sp|A6VYK6|RSMH_MARMS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|150837559|gb|ABR71535.1| S-adenosyl-methyltransferase MraW [Marinomonas sp. MWYL1]
          Length = 312

 Score =  201 bits (511), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 116/304 (38%), Positives = 179/304 (58%), Gaps = 9/304 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73
           T+ +H+ V+L + + +L      + +D TFG GG++R          ++  D+DP A+  
Sbjct: 4   TMAEHISVMLNESVDMLVTDTNGLYVDGTFGRGGHTRLVLDRLDKGRLLGFDKDPVAIGH 63

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
           G+  +     +FS+ Q +F+ + +++ +      VDGV+ DLGVSS QID  +RGFSF  
Sbjct: 64  GK-LLEQEDARFSIVQDSFANMAEHITNVFGVDRVDGVMMDLGVSSPQIDDAERGFSFMN 122

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM+   G SA++ +   + KD+  ++   GEE+ + RIA AI + R   P  TT
Sbjct: 123 DGPLDMRMNPDKGQSAAEWIATVSEKDMADVMYQYGEERFSRRIAKAICEYRSHTPILTT 182

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             LS +I +     +  + +PATR+FQ +RI++NNE+ +L  GL +A +ALK GG L V+
Sbjct: 183 LQLSKIIAEANPAWEKGK-NPATRAFQGIRIYINNELGDLEIGLEAAAQALKVGGRLAVI 241

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDR+VK+F   ++      RH+   NAH  +      K + P+Q +V+ N RSRS
Sbjct: 242 SFHSLEDRIVKRFMKLQAKGPELPRHLPIRNAHLDIKFKTVGKAIKPSQSEVSENVRSRS 301

Query: 309 AKLR 312
           A LR
Sbjct: 302 AVLR 305


>gi|307151535|ref|YP_003886919.1| S-adenosyl-methyltransferase MraW [Cyanothece sp. PCC 7822]
 gi|306981763|gb|ADN13644.1| S-adenosyl-methyltransferase MraW [Cyanothece sp. PCC 7822]
          Length = 299

 Score =  201 bits (511), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 129/315 (40%), Positives = 188/315 (59%), Gaps = 32/315 (10%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDR 66
           MS+A   T  +HVPVL  ++I+ LN  PG   LDAT GAGG++R   +  +N  V A+DR
Sbjct: 7   MSTADFSTF-NHVPVLTRELISGLNICPGGHYLDATVGAGGHTRKLLESYANVRVTAIDR 65

Query: 67  DPFAVSCGQETMRDYK-EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125
           D  A++     + +Y  ++ + +Q  F+  +    ++  DG++ DLGVSS Q+D  +RGF
Sbjct: 66  DSTAIAAAAANLAEYNIDRLTFWQGNFANYE--AKEETFDGIIADLGVSSPQLDHPERGF 123

Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF+   PLDMRM C   ++A+ V+N  +  +LT+I    GEE+ + +IA  IVK+R   P
Sbjct: 124 SFRLEAPLDMRMDCGQSLTAATVINTWDETELTKIFYNYGEERLSRQIAKQIVKQR---P 180

Query: 185 FQTTQDLSSLIQKTV---YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
           F +T +L+++I ++V   Y  +  RIHPATR FQALRI VN E+E L   L  +   LK 
Sbjct: 181 FYSTTELANVIARSVPPKY--RYGRIHPATRVFQALRIAVNQELESLLSFLIKSPYWLKR 238

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
            G++ V+SFHSLEDR+VK  F  RS  ++ V               +TKK ++P  ++ A
Sbjct: 239 DGIIGVISFHSLEDRIVKHQF--RSSPLLKV---------------LTKKPIIPQSDEQA 281

Query: 302 FNRRSRSAKLRAGMR 316
            N RSRSAKLR   R
Sbjct: 282 KNPRSRSAKLRLAQR 296


>gi|221065130|ref|ZP_03541235.1| S-adenosyl-methyltransferase MraW [Comamonas testosteroni KF-1]
 gi|220710153|gb|EED65521.1| S-adenosyl-methyltransferase MraW [Comamonas testosteroni KF-1]
          Length = 309

 Score =  201 bits (511), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 132/307 (42%), Positives = 183/307 (59%), Gaps = 17/307 (5%)

Query: 20  HVPVLL-EKVIALLNPA---PGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVS 72
           H+ VLL E V ALL  A   P    +DATFG GG+SR   + +G +  +IA D+DP A++
Sbjct: 7   HITVLLDEAVDALLGGAAEPPAGQWVDATFGRGGHSRLILRRLGPDGRLIAFDKDPDAIA 66

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              E  R    +FS+    F  L + +P+  V GV+ DLGVSS QID  DRGFSF+  GP
Sbjct: 67  ---EAARITDARFSIRHEGFRHLSE-LPEGSVQGVLMDLGVSSPQIDNPDRGFSFRFDGP 122

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQTTQD 190
           LDMRM  + G S ++ +  A V+ +  ++   GEE+ A  IA AIV RR+S  P +TT +
Sbjct: 123 LDMRMDTTRGQSVAEWLEDAEVQQIAEVIRDYGEERFAGPIAKAIVARRESQGPLRTTAE 182

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ L+   V   +  + +PATR+FQALRIF+N E++EL Q L ++ + L  GG L V+SF
Sbjct: 183 LAQLVAGAVKTREAGQ-NPATRTFQALRIFINAELQELEQALEASLRVLAPGGRLAVISF 241

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDR+VK+F A  S +V   R      A P   +    + + P+  +VA N RSRSA 
Sbjct: 242 HSLEDRIVKQFIAKHSKEVYDRRAPF---APPTPMRLKALERIKPSAAEVAANPRSRSAV 298

Query: 311 LRAGMRT 317
           +R   RT
Sbjct: 299 MRVAERT 305


>gi|218886065|ref|YP_002435386.1| S-adenosyl-methyltransferase MraW [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|263446322|sp|B8DP86|RSMH_DESVM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|218757019|gb|ACL07918.1| S-adenosyl-methyltransferase MraW [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 361

 Score =  201 bits (511), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 123/311 (39%), Positives = 173/311 (55%), Gaps = 11/311 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQE 76
           HVPVLL++V+  L P PG   LD T G GG+S +   ++G +  +  LDRD  A+   ++
Sbjct: 26  HVPVLLDEVLEALAPRPGGRYLDGTVGLGGHSAAIMERIGPDGELCCLDRDTTALGLARQ 85

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  +  +   F   ++  +  +   G   VDG + D+GVSSMQID  DRGFSF   GPL
Sbjct: 86  RLAPWGGRVHFFHTRYADFEAALDQLGWDKVDGALIDIGVSSMQIDMADRGFSFHADGPL 145

Query: 134 DMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           DMRM   G    AS +VN+A V  L  I+   GE+  A RIA AIV  R + P +TT  L
Sbjct: 146 DMRMDRDGDEAPASRLVNRATVDVLKDIILRYGEDPMAGRIARAIVDARAAGPIETTAQL 205

Query: 192 SSLIQKT--VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           ++++ +     +   +R HPATR+FQALR+ VN+E+ +L + L      L  GG L V++
Sbjct: 206 AAIVDRAYPAKWRATSRNHPATRTFQALRMAVNDELGQLERFLDRILDRLNPGGRLAVIT 265

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSN-AHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK      S   +  R +      H A    +T+K V  T  ++A N R+ S
Sbjct: 266 FHSLEDRIVKHRLRDESQGCVCPRSVSRCECGHKARVDVLTRKPVTATDAELARNSRASS 325

Query: 309 AKLRAGMRTVE 319
           AKLRA  R  E
Sbjct: 326 AKLRAAQRLAE 336


>gi|270263951|ref|ZP_06192219.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Serratia
           odorifera 4Rx13]
 gi|270042144|gb|EFA15240.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Serratia
           odorifera 4Rx13]
          Length = 313

 Score =  201 bits (511), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 123/310 (39%), Positives = 187/310 (60%), Gaps = 19/310 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMG--SNVIALDRDPFAVSCGQE 76
           H  VLL++ +  LN     + +D TFG GG+SR    ++G    ++A+DRDP A++  + 
Sbjct: 7   HTTVLLDEAVNGLNIRSNGIYIDGTFGRGGHSRLILSQLGPEGRLLAIDRDPQAIAAAK- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           ++ D +  F++    FS L  YV ++     +DGV+ DLGVSS Q+D  +RGFSF + GP
Sbjct: 66  SIEDPR--FTIVHGPFSDLSHYVRERELVGQIDGVLLDLGVSSPQLDDAERGFSFMRDGP 123

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM   SG SAS+ + +A   D+  +L   GEE+ A RIA AIV+R +  P   T++L
Sbjct: 124 LDMRMDPSSGQSASEWLLKAEADDIAWVLKTFGEERFAKRIARAIVERNRVEPMTRTKEL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI     F + ++ HPATRSFQA+RI++N+E+EE+ + L  A + L   G L ++SFH
Sbjct: 184 ADLIANASPFREKHK-HPATRSFQAIRIYINSELEEIERALDGALEVLAPQGRLSIISFH 242

Query: 252 SLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306
           SLEDR+VK+F    SR  +V A   +             +++ K  ++P+Q++VA N R+
Sbjct: 243 SLEDRIVKRFMRHHSRGAQVPAGLPLTEEQLRGMGGRTLKALGK--MMPSQDEVAENPRA 300

Query: 307 RSAKLRAGMR 316
           RS+ LR   R
Sbjct: 301 RSSVLRIAER 310


>gi|256830379|ref|YP_003159107.1| S-adenosyl-methyltransferase MraW [Desulfomicrobium baculatum DSM
           4028]
 gi|256579555|gb|ACU90691.1| S-adenosyl-methyltransferase MraW [Desulfomicrobium baculatum DSM
           4028]
          Length = 320

 Score =  201 bits (511), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 120/311 (38%), Positives = 180/311 (57%), Gaps = 13/311 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
           DH+PV+LE+V+  + P PG   +DAT G GG++    ++    + ++ LDRD  A++   
Sbjct: 6   DHIPVMLEEVMHWIAPRPGGFYMDATLGLGGHAARLMELTNGQARLLGLDRDEQALAKAG 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E +  Y E   L   +F      + + G   +DGV+ DLGVSS+Q+D  +RGFSF + GP
Sbjct: 66  ERLAQYGENVQLAHTSFQHFSRALREVGWDKLDGVIADLGVSSLQLDSPERGFSFLQDGP 125

Query: 133 LDMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           LDMRM     G  AS +VN A+ + L ++L   GEE  A RIA AIVK R++A   +T +
Sbjct: 126 LDMRMDPGSGGEPASVIVNGASFERLRQLLWDYGEEPMAGRIAGAIVKIRETARIDSTLE 185

Query: 191 LSSLIQKTVYFSKN---NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           L+ ++    Y +K    +R HPAT++FQALR+ VN E+ E+   L      L+ G  + V
Sbjct: 186 LARIV-AAAYPAKRRALSRNHPATKTFQALRLEVNQELREVEFFLERIVDHLRPGARICV 244

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           +SFHSLEDR+VK+ F   S   +  R + +    H    +   +K ++PT++++  N RS
Sbjct: 245 ISFHSLEDRIVKRAFRKESSACLCPREYPVCQCGHTQKLRLPFRKPLIPTEDEMRANSRS 304

Query: 307 RSAKLRAGMRT 317
           RSAKLR   R 
Sbjct: 305 RSAKLRVAERV 315


>gi|300722051|ref|YP_003711331.1| S-adenosyl-dependent methyl transferase [Xenorhabdus nematophila
           ATCC 19061]
 gi|297628548|emb|CBJ89120.1| S-adenosyl-dependent methyl transferase [Xenorhabdus nematophila
           ATCC 19061]
          Length = 314

 Score =  201 bits (511), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 122/304 (40%), Positives = 178/304 (58%), Gaps = 15/304 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN     + +D TFG GG+SR    K+G N  ++A+DRDP A+   + 
Sbjct: 8   HTSVLLDEAVNGLNIQEDGIYIDGTFGRGGHSRLILSKLGPNGRLMAIDRDPQAIEASKA 67

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                 E+FS+    FS+L  YV D      ++GV+ DLGVSS Q+D  +RGFSF + GP
Sbjct: 68  IT---DERFSITHGPFSELATYVEDADLVGKINGVLLDLGVSSPQLDDPERGFSFMRDGP 124

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G SAS+ + +A  +D+  +L   GEE+ A RIA AIV R Q  P   T++L
Sbjct: 125 LDMRMDPTRGQSASEWLMKAEEEDIAWVLKTFGEERFAKRIARAIVARSQEQPMTRTREL 184

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI +     + ++ HPATRSFQA+RI++N+E+EE+ + L  A + L   G L V+SFH
Sbjct: 185 AELIAQASPIKEKHK-HPATRSFQAIRIYINSELEEIERALDGALRVLAPQGRLSVISFH 243

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNRRSRS 308
           SLEDR+VK+F    S        +  + A        + K +    P+ ++VA N R+RS
Sbjct: 244 SLEDRIVKRFIRQNSQGPQVPAGLPLTEAQLKAMGGRSLKFIGKMKPSGDEVATNPRARS 303

Query: 309 AKLR 312
           + LR
Sbjct: 304 SVLR 307


>gi|254230425|ref|ZP_04923805.1| S-adenosyl-methyltransferase MraW [Vibrio sp. Ex25]
 gi|262395267|ref|YP_003287121.1| S-adenosyl-methyltransferase MraW [Vibrio sp. Ex25]
 gi|151937058|gb|EDN55936.1| S-adenosyl-methyltransferase MraW [Vibrio sp. Ex25]
 gi|262338861|gb|ACY52656.1| S-adenosyl-methyltransferase MraW [Vibrio sp. Ex25]
          Length = 316

 Score =  201 bits (511), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 124/309 (40%), Positives = 176/309 (56%), Gaps = 20/309 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H+ VLL + I  L   P  + +D TFG GG+SR+   K+G N  + ++DRDP A++   E
Sbjct: 7   HISVLLNESIDGLAIKPDGIYIDGTFGRGGHSRTILSKLGENGRLYSIDRDPQAIA---E 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +    +F++    FS + +Y  +      VDGV+ DLGVSS Q+D  +RGFSF K GP
Sbjct: 64  AGKINDPRFTIIHGPFSGIAEYAEEYDLVGKVDGVLLDLGVSSPQLDDAERGFSFMKDGP 123

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ---SAPFQTT 188
           LDMRM   SGI  S  + +A++ D+T ++   GE+K A RIA AIV  R+   + P   T
Sbjct: 124 LDMRMDPTSGIPVSQWLMEADLDDITWVIREFGEDKHARRIAKAIVAYREDEENEPLVRT 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ LI      S   + HPATR+FQA RI++N+E+EE+   L+ A   L   G L V+
Sbjct: 184 GQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAASILAPEGRLSVI 243

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSN-----AHPAVFQSITKKVVVPTQEDVAFN 303
           SFHSLEDR+VK+F    S K   V H IP       A  +       K + P+++++  N
Sbjct: 244 SFHSLEDRMVKRFIRKES-KGPEVPHGIPMTEEQIRALGSANMKAVSKAIKPSKQEIEMN 302

Query: 304 RRSRSAKLR 312
            RSRS+ LR
Sbjct: 303 PRSRSSVLR 311


>gi|195055510|ref|XP_001994660.1| GH14890 [Drosophila grimshawi]
 gi|193892423|gb|EDV91289.1| GH14890 [Drosophila grimshawi]
          Length = 368

 Score =  201 bits (511), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 130/332 (39%), Positives = 184/332 (55%), Gaps = 39/332 (11%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQE 76
           HVPVL +  I  L P P    +D TFGAGG++R     C   + V ALDRDP A    Q 
Sbjct: 39  HVPVLCQTAIEYLEPRPKGKYIDMTFGAGGHTRRLLDSCPEAT-VYALDRDPIAYELAQR 97

Query: 77  TMRD--YKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQK 129
             ++  Y  +       FS L   + D+ V     DG++FD G SSMQ D   RGFS   
Sbjct: 98  LSQESAYAGRLVPLLGKFSDLPQLLTDRNVPRHSFDGILFDFGCSSMQFDEAARGFSIAH 157

Query: 130 SGPLDMRMSCS---GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP-F 185
           +GPLDMRM C    G+SA+DV+ +    DL RIL + GEEK A +IA AIV+ R +    
Sbjct: 158 NGPLDMRMDCGRSGGVSAADVLARIEEADLARILRVYGEEKAAKKIARAIVEARGALQRI 217

Query: 186 QTTQDLSSLIQKTVYFSKNNR-----IHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           +TT+ L+ L+   +   +         H AT++FQALRIFVNNE+ E+  G+  A++ L+
Sbjct: 218 ETTRQLAELVASVLGDGQRQDKLQRPAHLATKTFQALRIFVNNELNEINYGMLLAQEYLR 277

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVM-AVRHMIPSN--AH-----PAV-------- 284
           A G L+ ++FHSLED +VK+     +G V+  V + +P     H     PA+        
Sbjct: 278 AQGRLVAITFHSLEDTIVKRHI---NGNVIEGVANPLPLKYCGHDITHDPALLESFVQSN 334

Query: 285 FQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           +Q + + V++P   ++A N RSRSAKLRA ++
Sbjct: 335 WQQLHRHVILPDATEIASNSRSRSAKLRAAIK 366


>gi|326440704|ref|ZP_08215438.1| 16S rRNA m(4)C1402 methyltranserfase [Streptomyces clavuligerus
           ATCC 27064]
          Length = 309

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 126/307 (41%), Positives = 181/307 (58%), Gaps = 12/307 (3%)

Query: 24  LLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETM 78
           +L++ + LL PA   PG V++D T G GG+S +      G  +IALDRDP A+    E +
Sbjct: 1   MLQRCLDLLAPALESPGAVVVDCTLGLGGHSEALLSRFPGVRLIALDRDPEALRLSAERL 60

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
             Y E+ +L  A + +L   +   GV    GV+FDLGVSSMQ+D  DRGF++ +  PLDM
Sbjct: 61  APYGERATLVHAVYDELPAVLARLGVPRVQGVLFDLGVSSMQLDEADRGFAYAQDAPLDM 120

Query: 136 RMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM   +G+SA++V+N     +L RIL   GEEKQA RI  AIV+ R + PF T+  L  L
Sbjct: 121 RMDQTTGMSAAEVLNTYPPGELVRILRAYGEEKQAKRIVSAIVRERVNEPFSTSARLVEL 180

Query: 195 IQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           I+  +   +K    +PA R+FQALRI VN E+  L + + +A  AL   G + V+S+HSL
Sbjct: 181 IRDALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAVPAAVAALAVEGRIAVLSYHSL 240

Query: 254 EDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           EDRLVK+ FA+ +         ++P    P   + +T+   +PT ++VA NRR+  A+LR
Sbjct: 241 EDRLVKQVFAAGAATTAPPGLPVVPEEYQPR-LRLLTRGAELPTDDEVAENRRAAPARLR 299

Query: 313 AGMRTVE 319
              R  E
Sbjct: 300 GAQRIRE 306


>gi|170287862|ref|YP_001738100.1| S-adenosyl-methyltransferase MraW [Thermotoga sp. RQ2]
 gi|262825881|sp|B1LCF9|RSMH_THESQ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|170175365|gb|ACB08417.1| S-adenosyl-methyltransferase MraW [Thermotoga sp. RQ2]
          Length = 299

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 116/306 (37%), Positives = 184/306 (60%), Gaps = 29/306 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77
           H+PV++ +VI  L P   K+ILD T G GG+SR+  +   G  +I +D D   +   +E 
Sbjct: 8   HIPVMVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEK 67

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++++ ++ SLF+ ++ +    +   GV   DG++ DLGVS+ Q+   +RGF+F++  PLD
Sbjct: 68  LKEFSDRASLFKISYREADFLLKTLGVEKVDGILMDLGVSTYQLKGENRGFTFEREEPLD 127

Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQ-ASRIAHAIVKRRQSAPFQTTQDLS 192
           MRM   S ++A  V+N+   ++L RI+   GEEK+ A RIA  IV+ R   P  TT DL 
Sbjct: 128 MRMDLESEVTAQKVLNELPEEELARIIFEYGEEKKFARRIARKIVENR---PLNTTLDLV 184

Query: 193 SLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +++ +  Y  +  + H AT++FQA+RI+VN E+E L + LR AE  L  GG ++V+SF
Sbjct: 185 KAVREALPSYEIRRRKRHFATKTFQAIRIYVNRELENLKEFLRKAEDLLNPGGRIVVISF 244

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDR+VK+ F  R+ K + +               +T+K V P++E++  N R+RS +
Sbjct: 245 HSLEDRIVKETF--RNSKKLRI---------------LTEKPVRPSEEEIRENPRARSGR 287

Query: 311 LRAGMR 316
           LRA  R
Sbjct: 288 LRAAER 293


>gi|307244139|ref|ZP_07526257.1| S-adenosyl-methyltransferase MraW [Peptostreptococcus stomatis DSM
           17678]
 gi|306492510|gb|EFM64545.1| S-adenosyl-methyltransferase MraW [Peptostreptococcus stomatis DSM
           17678]
          Length = 311

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 119/307 (38%), Positives = 179/307 (58%), Gaps = 13/307 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
           +HV VLL + I  LN  P  V +D T G  G+SR   K  S+   ++  D+D  A++  +
Sbjct: 4   NHVSVLLNECIENLNIKPDGVYVDCTMGGAGHSREIAKRLSDKGRLVCFDQDINAINVAK 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + +++Y ++  L  + F  L++ +  +G+   DGV+ DLGVSS Q+D  DRGFS+     
Sbjct: 64  DRLKEYNDRVVLVHSNFENLKEELESRGIFKIDGVLADLGVSSHQLDEADRGFSYMHDAR 123

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM   + +SA  VVN+ + +DL  I+   GEEK A RIA  IVK R      TT DL
Sbjct: 124 LDMRMDDRASMSAWQVVNEYSQEDLYTIIKDYGEEKWAKRIAEFIVKERADHSIDTTFDL 183

Query: 192 SSLIQKTVYFSKNNRI---HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             +I+K +   K  RI   HPA R+FQA+RI VNNE+  + + +R A   +  GG + ++
Sbjct: 184 VDVIKKAI--PKGARIDGPHPAKRTFQAIRIEVNNELGVINKMIRDAVSMMNKGGRICII 241

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+VK  F   +   +    +     +  +  + IT+K ++P++E+V FN RSR
Sbjct: 242 TFHSLEDRIVKNEFRDLNKDCICPPELPFCQCNKKSELKIITRKPILPSEEEVDFNPRSR 301

Query: 308 SAKLRAG 314
           S+KLR G
Sbjct: 302 SSKLRVG 308


>gi|229820904|ref|YP_002882430.1| S-adenosyl-methyltransferase MraW [Beutenbergia cavernae DSM 12333]
 gi|263447254|sp|C5BW67|RSMH_BEUC1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|229566817|gb|ACQ80668.1| S-adenosyl-methyltransferase MraW [Beutenbergia cavernae DSM 12333]
          Length = 333

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 123/320 (38%), Positives = 181/320 (56%), Gaps = 14/320 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIA 63
           MS+        H PVL ++ + LL PA    G V++DAT G GG+S    +    + V+ 
Sbjct: 1   MSTPDAQAAALHAPVLAQRCVDLLAPALESDGAVLVDATLGMGGHSELVLEQCPHARVLG 60

Query: 64  LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDC 120
           +DRDP A+      +  + ++F+   A + ++ D         V GV+FDLGVSS+Q+D 
Sbjct: 61  IDRDPRALELATARLARFGQRFTPVHAVYDEIDDVARQHAGGAVQGVLFDLGVSSLQLDD 120

Query: 121 GDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
             RGF++ +  PLDMRM   +G +A+D++  A+  +L RIL   GEEK A RIA AIV+R
Sbjct: 121 AGRGFAYAQDAPLDMRMDPTTGPTAADLLADADEAELRRILRTYGEEKFAPRIAAAIVRR 180

Query: 180 RQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R++AP + + DL  +++  +  S +    HPA R+FQALRI VN E+E L + L  A  A
Sbjct: 181 REAAPLRRSSDLVEVVRGAIPMSAQRTGGHPAKRTFQALRIAVNRELEVLERALPRAIDA 240

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPT 296
           L  GG ++V S+HSLEDRLVK+  A R     A RH+  +P    P   + +T       
Sbjct: 241 LAVGGRIVVESYHSLEDRLVKRELA-RGATSSAPRHLPVVPEEDQP-YLELLTHGAEQAD 298

Query: 297 QEDVAFNRRSRSAKLRAGMR 316
             ++A N R+ S +LRA  R
Sbjct: 299 DVELAANPRAASVRLRAARR 318


>gi|238918670|ref|YP_002932184.1| S-adenosyl-methyltransferase MraW, [Edwardsiella ictaluri 93-146]
 gi|263447473|sp|C5B9E8|RSMH_EDWI9 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|238868238|gb|ACR67949.1| S-adenosyl-methyltransferase MraW, putative [Edwardsiella ictaluri
           93-146]
          Length = 313

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 124/310 (40%), Positives = 185/310 (59%), Gaps = 19/310 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +A LN     + +D TFG GG+SR    ++G+   +IA+DRDP A++   +
Sbjct: 7   HKTVLLDEAVAGLNLRSDGIYIDGTFGRGGHSRLILSQLGAEGRLIAIDRDPQAIAAAAQ 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  +FS+    FS L DYV + G    +DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 67  ID---DPRFSIIHGPFSALADYVQEMGLSSRIDGILLDLGVSSPQLDDPERGFSFMRDGP 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G+SA+  + QA   D+  +L   GEE+ A RIA AIV+R ++ P   T++L
Sbjct: 124 LDMRMDPSRGLSAAQWLMQAEEDDIAWVLKTFGEERFAKRIARAIVERNRTEPLSRTREL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           ++LI     F + ++ HPATRSFQA+RI++N+E++E+ + L  A  AL   G L V+SFH
Sbjct: 184 AALISDASPFKEKHK-HPATRSFQAIRIYINSELDEIERALEGALVALAPQGRLSVISFH 242

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRRS 306
           SLEDRLVK+F    S      + +  + A          +++ K+  +P + +V  N R+
Sbjct: 243 SLEDRLVKRFIRQYSRGPQVPKGLPLTEAQLQAQGGPQLKALGKR--MPGEREVVDNPRA 300

Query: 307 RSAKLRAGMR 316
           RS+ LR   R
Sbjct: 301 RSSVLRVAER 310


>gi|268591763|ref|ZP_06125984.1| S-adenosyl-methyltransferase MraW [Providencia rettgeri DSM 1131]
 gi|291312724|gb|EFE53177.1| S-adenosyl-methyltransferase MraW [Providencia rettgeri DSM 1131]
          Length = 317

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 130/317 (41%), Positives = 183/317 (57%), Gaps = 24/317 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQE 76
           HV VLL++ +  LN  P  + +D TFG GG+SR    ++G N  +IA+DRDP A+   Q 
Sbjct: 8   HVTVLLDEAVNGLNIKPNGIYIDGTFGRGGHSRLILSQLGENGRLIAIDRDPEAIKAAQ- 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           T+ D +  F +    FS + +YV ++G    +DGV+ DLGVSS Q+D  +RGFSF + GP
Sbjct: 67  TIDDPR--FMIKHGPFSAIAEYVEEEGLVGQIDGVLLDLGVSSPQLDDPERGFSFMRDGP 124

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR---QSAPFQTT 188
           LDMRM  + G SA   +  A   D+  +L   GEE+ A RIA AIV+R    +  P   T
Sbjct: 125 LDMRMDPTKGQSAQQWLMDAEADDIAWVLKTFGEERFAKRIARAIVERNHNPEEEPLTRT 184

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           + L+ LI K V   K+   HPATRSFQA+RI++N+E+EE+ + L  A   L   G L V+
Sbjct: 185 RHLAELIAK-VSPMKDRHKHPATRSFQAIRIYINSELEEIEKALEGAMNVLAPQGRLSVI 243

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIP------SNAHPAVFQSITKKVVVPTQEDVAF 302
           SFHSLEDRLVK+F    S K  +V   IP           A  + + K  + P++ ++  
Sbjct: 244 SFHSLEDRLVKRFIRKNS-KGPSVPAGIPLTEAQIKELGAAQLRDLGK--MKPSENEIDE 300

Query: 303 NRRSRSAKLRAGMRTVE 319
           N R+RS+ LR   +  E
Sbjct: 301 NPRARSSVLRFAEKAAE 317


>gi|197285925|ref|YP_002151797.1| S-adenosyl-methyltransferase [Proteus mirabilis HI4320]
 gi|227356432|ref|ZP_03840820.1| S-adenosyl-methyltransferase [Proteus mirabilis ATCC 29906]
 gi|262824977|sp|B4F119|RSMH_PROMH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|194683412|emb|CAR44158.1| S-adenosyl-methyltransferase [Proteus mirabilis HI4320]
 gi|227163542|gb|EEI48463.1| S-adenosyl-methyltransferase [Proteus mirabilis ATCC 29906]
          Length = 315

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 129/315 (40%), Positives = 180/315 (57%), Gaps = 22/315 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN  P  + +D TFG GG+SR    ++G    +IA+DRDP A++   E
Sbjct: 8   HTSVLLDEAVNGLNIKPSGIYIDGTFGRGGHSRLILSQLGEQGRLIAIDRDPQAIAVANE 67

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  +FS+    FS ++ Y+ + G    VDGV+ DLGVSS Q+D  +RGFSF + GP
Sbjct: 68  I---DDPRFSIIHGPFSNIEHYINELGLSGKVDGVLLDLGVSSPQLDDPERGFSFMRDGP 124

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA-PFQTTQD 190
           LDMRM   +G SA+  +  A   D+T +L   GEE+ A RIA AIV R ++  P   T+ 
Sbjct: 125 LDMRMDPTTGQSAAQWLMNAEEDDITWVLKTFGEERFAKRIARAIVARNKTEEPLTRTKQ 184

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ LI +     + ++ HPATRSFQA+RI++N+E++E+ + L+ A   L   G L V+SF
Sbjct: 185 LADLISEASPVKERHK-HPATRSFQAIRIYINSELDEIEKALKGAVSILAPAGRLSVISF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAH------PAVFQSITKKVVVPTQEDVAFNR 304
           HSLEDRLVK+F    S K   V   IP           A   SI K  + PT  +V  N 
Sbjct: 244 HSLEDRLVKRFIRDES-KGPVVPAGIPLTEEQIKALGSARLSSIHK--MKPTGVEVEENP 300

Query: 305 RSRSAKLRAGMRTVE 319
           R+RS+ LR   R  E
Sbjct: 301 RARSSVLRVAQRIEE 315


>gi|262831577|sp|A4VIH0|RSMH_PSEU5 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 315

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 122/305 (40%), Positives = 183/305 (60%), Gaps = 16/305 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76
           H+ VLL++ +A LN       LD TFG GG+SR   + +G N  ++  D+DP A++ GQ 
Sbjct: 9   HITVLLDEAVAALNVRADGRYLDGTFGRGGHSRLLLQQLGPNGQLLGFDKDPLAIATGQ- 67

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            +     +F + Q +F++L D V  +G    V G++ DLGVSS Q+D   RGFSF   GP
Sbjct: 68  ALAAEDGRFVVVQRSFAELGDEVAQRGWTGAVSGILLDLGVSSPQLDDPIRGFSFLNDGP 127

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G+SA++ +  A+  ++ R+    GEE+ A R+A A+V+RR  APF+ T DL
Sbjct: 128 LDMRMDPSRGVSAAEWIASADEDEIARVFKDYGEERFAKRMARAVVQRRAEAPFERTADL 187

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++       +  +  PATR+FQ LRI +NNE+ +L +GL +A  AL+ GG L+V+SFH
Sbjct: 188 AKVLTDANPAWEKGK-SPATRAFQGLRIHINNELGDLERGLDAALDALEVGGRLVVISFH 246

Query: 252 SLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVP---TQEDVAFNRRSR 307
           SLEDR+VK+F    + G+   +   +P    P  F+   K +  P   ++ +V  N RSR
Sbjct: 247 SLEDRIVKQFMRRHAKGEADKLPRDLP--IIPKAFEPRLKLIGKPQYASEAEVKANPRSR 304

Query: 308 SAKLR 312
           SA +R
Sbjct: 305 SAVMR 309


>gi|77460902|ref|YP_350409.1| S-adenosyl-methyltransferase MraW [Pseudomonas fluorescens Pf0-1]
 gi|88909213|sp|Q3K736|RSMH_PSEPF RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|77384905|gb|ABA76418.1| S-adenosyl-methyltransferase [Pseudomonas fluorescens Pf0-1]
          Length = 315

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 124/309 (40%), Positives = 183/309 (59%), Gaps = 22/309 (7%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQ 75
           +H+ VLL++ +  L   P    LD TFG GG+SR    K+G +  +I  D+DP A++ GQ
Sbjct: 8   NHITVLLDEAVEALAVRPDGCYLDGTFGRGGHSRLILSKLGPDGRLIGFDKDPQAIATGQ 67

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            T+     +F + Q +F++L   V ++G    V G++ DLGVSS Q+D  +RGFSF   G
Sbjct: 68  -TLAAEDGRFVVVQRSFAELGSVVAERGLTGKVSGILLDLGVSSPQLDDAERGFSFLNDG 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  S GISA++ VN A V+++ R+    GEE+ + R+A A+V+RR   PF+ T D
Sbjct: 127 PLDMRMDPSRGISAAEFVNTAPVEEIARVFKEYGEERFSGRMARAVVERRDVTPFERTAD 186

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ ++ K    +     +PATR+FQ LRI VNNE+ +L  GL +A + L+ GG L+V+SF
Sbjct: 187 LAEVL-KVANPAWEKGKNPATRAFQGLRIQVNNELGDLEAGLEAALECLEVGGRLVVISF 245

Query: 251 HSLEDRLVKKFF-------ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
           HSLEDR+VK F        A    + + VRH+      P +   +  K    +  ++  N
Sbjct: 246 HSLEDRIVKLFMRKLVKGEADNLPRNLPVRHVA---FEPKI--KVHGKAQTASDAELKAN 300

Query: 304 RRSRSAKLR 312
            RSRSA +R
Sbjct: 301 PRSRSAVMR 309


>gi|156973213|ref|YP_001444120.1| S-adenosyl-methyltransferase MraW [Vibrio harveyi ATCC BAA-1116]
 gi|263504515|sp|A7MWK7|RSMH_VIBHB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|156524807|gb|ABU69893.1| hypothetical protein VIBHAR_00894 [Vibrio harveyi ATCC BAA-1116]
          Length = 316

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 126/309 (40%), Positives = 175/309 (56%), Gaps = 20/309 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H+ VLL + I  L   P  + +D TFG GG+SR+   K+G N  + ++DRDP A++   E
Sbjct: 7   HISVLLNESIDGLAIKPDGIYIDGTFGRGGHSRTILSKLGENGRLYSIDRDPQAIA---E 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +    +F++    FS +  Y  + G    VDGV+ DLGVSS Q+D  +RGFSF K GP
Sbjct: 64  AAKIDDPRFTIIHGPFSGMAKYAEEYGLVGKVDGVLLDLGVSSPQLDDAERGFSFMKDGP 123

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ---SAPFQTT 188
           LDMRM   SGI  S  + +A++ D+T ++   GE+K A RIA AIV  R+   + P   T
Sbjct: 124 LDMRMDPTSGIPVSQWLMEADLDDITWVIREFGEDKHARRIAKAIVAYREDEENEPMVRT 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ LI      S   + HPATR+FQA RI++N+E+EE+   L+ A   L   G L V+
Sbjct: 184 GQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAASILAPEGRLSVI 243

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSN-----AHPAVFQSITKKVVVPTQEDVAFN 303
           SFHSLEDR+VK+F    S K   V H IP       A  +       K   PT++++  N
Sbjct: 244 SFHSLEDRMVKRFIRKES-KGPEVPHGIPMTEEQIRALGSANMKPIGKANKPTKQEIDMN 302

Query: 304 RRSRSAKLR 312
            RSRS+ LR
Sbjct: 303 PRSRSSVLR 311


>gi|256379773|ref|YP_003103433.1| S-adenosyl-methyltransferase MraW [Actinosynnema mirum DSM 43827]
 gi|255924076|gb|ACU39587.1| S-adenosyl-methyltransferase MraW [Actinosynnema mirum DSM 43827]
          Length = 316

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 117/308 (37%), Positives = 175/308 (56%), Gaps = 8/308 (2%)

Query: 20  HVPVLLEKVIALLNPA-PGK---VILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73
           HVPVLL++V+ LL PA  G+   V +D T G GG+S +  K   G  +I LDRDP A++ 
Sbjct: 7   HVPVLLDRVLGLLAPALAGRDDAVFVDCTLGLGGHSEAVLKAHPGVRLIGLDRDPQAIAL 66

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  +  + ++    Q T+  + + V  + VDG++ DLGVSS+Q+D  +RGF++ +  PL
Sbjct: 67  AKARLAPFADRVEFVQTTYDGIAEAVDGRRVDGILMDLGVSSLQLDARERGFAYSQDAPL 126

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRMS  SG +A+DV+N     +L R+L   GEE+ A +IA A+V+ R   PF T+  L 
Sbjct: 127 DMRMSAGSGETAADVLNTYPAAELARVLRDYGEERFARKIAAAVVRERAKEPFTTSGRLV 186

Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            L+  +V   ++    HPA R+FQALRI VN E+E L   L +A   L  GG ++V S+ 
Sbjct: 187 ELLYASVPAATRRTGGHPAKRTFQALRIEVNRELESLRAALPAALSVLAVGGRIVVESYQ 246

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+VK+  A  +     V   +    H      +T+   V  + ++  N R+   +L
Sbjct: 247 SLEDRMVKRALADLAASRTPVGLPVELPGHGPELTLLTRGAEVANESEIEDNPRAAPVRL 306

Query: 312 RAGMRTVE 319
           RA  R  E
Sbjct: 307 RAAERIRE 314


>gi|269104116|ref|ZP_06156813.1| S-adenosyl-methyltransferase MraW [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268164014|gb|EEZ42510.1| S-adenosyl-methyltransferase MraW [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 315

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 122/314 (38%), Positives = 184/314 (58%), Gaps = 21/314 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQ 75
           +HV VLL + +  L   P  + +D TFG GG+SR    K+G N  + ++DRDP A++  Q
Sbjct: 6   EHVSVLLHESVDGLAIKPDGIYIDGTFGRGGHSRLILSKLGENGRLYSIDRDPQAIAEAQ 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +       +F++    FS ++ Y+ ++     VDG++ DLGVSS Q+D  +RGFSF + G
Sbjct: 66  KI---DDPRFNIIHGPFSGMEKYMEERDLIGRVDGILLDLGVSSPQLDDAERGFSFMRDG 122

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---PFQT 187
           PLDMRM   SG +AS+ +  A+  D+  +L   GEE+ A RIA  IV+ R+     P   
Sbjct: 123 PLDMRMDPTSGQAASEWLATADASDIAWVLKEFGEERFAKRIARGIVEHREDPEKEPLTR 182

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T  L++LI +   F K+   HPATRSFQA+RI++N+E++E+A  L  A   L  GG L V
Sbjct: 183 TLQLANLIAQVSPF-KDKHKHPATRSFQAIRIYINSELDEIATALNGAVNILAPGGRLSV 241

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSN-----AHPAVFQSITKKVVVPTQEDVAF 302
           +SFHSLEDR+VK+F  ++S K   +   +P       A  +    +  K + P+Q ++ +
Sbjct: 242 ISFHSLEDRMVKRFMRNKS-KGPEIPAGLPLTEEQIKALGSADLKLASKAIKPSQNELGY 300

Query: 303 NRRSRSAKLRAGMR 316
           N R+RS+ LR   R
Sbjct: 301 NARARSSVLRLAER 314


>gi|238752424|ref|ZP_04613901.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia
           rohdei ATCC 43380]
 gi|238709357|gb|EEQ01598.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia
           rohdei ATCC 43380]
          Length = 320

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 125/313 (39%), Positives = 183/313 (58%), Gaps = 19/313 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN     + +D TFG GG+SR    ++G    +IA+DRDP AV   + 
Sbjct: 14  HTSVLLDEAVNGLNIRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDRDPLAVEAAKS 73

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  +FS+    FS+L  YV +      +DGV+ DLGVSS Q+D  +RGFSF + GP
Sbjct: 74  IT---DPRFSIVHGPFSELAHYVRELDLVGRIDGVLLDLGVSSPQLDDPERGFSFMRDGP 130

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G+SA+D + +A+ +D+  +L   GEE+ A R+A AIV+R  + P   T++L
Sbjct: 131 LDMRMDPTRGLSAADWLMKASAEDIAWVLKTFGEERFAKRLARAIVERNLTQPMTRTKEL 190

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI     F   ++ HPATRSFQA+RI++N+E+EE+ + L  A + L   G L V+SFH
Sbjct: 191 ADLIANASPFRDKHK-HPATRSFQAIRIYINSELEEIERALDGALEVLAPEGRLSVISFH 249

Query: 252 SLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306
           SLEDR+VK F    SR  +V A   +  +          +S+ K  ++P   +VA N R+
Sbjct: 250 SLEDRIVKNFIRHHSRGPQVPAGLPLTEAQLRSMGGRTLKSVGK--MMPPDAEVAENPRA 307

Query: 307 RSAKLRAGMRTVE 319
           RS+ LR   R  E
Sbjct: 308 RSSVLRFAERIKE 320


>gi|311742808|ref|ZP_07716616.1| S-adenosyl-methyltransferase MraW [Aeromicrobium marinum DSM 15272]
 gi|311313488|gb|EFQ83397.1| S-adenosyl-methyltransferase MraW [Aeromicrobium marinum DSM 15272]
          Length = 325

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 120/313 (38%), Positives = 187/313 (59%), Gaps = 16/313 (5%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVIL-----DATFGAGGYSRSFCKMGSN--VIALDRD 67
           HT   HVPV L++V+ LL PA           D T G GG++ +  +   +  V+ +DRD
Sbjct: 9   HTRPSHVPVALDRVLDLLAPAVEAAGEAAVVVDTTLGLGGHTAAMLQRFPDLRVVGIDRD 68

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRG 124
           P A+    E + D   + +L  A + ++ D + + GV   DGV+FDLGVSSMQ+D G+RG
Sbjct: 69  PDALRLAAERLADVAGRVTLVHAVYDRIADALDEAGVERVDGVLFDLGVSSMQLDVGERG 128

Query: 125 FSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           F++ +  PLDMRM   +GI+A++V+N     DL R+L   GEEK A RIA A+V  R   
Sbjct: 129 FAYAQDAPLDMRMDPTTGITAAEVLNTYAAGDLARVLRTYGEEKFARRIADAVVAERDEH 188

Query: 184 PFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           PF T+  L  L+++++   ++    +PA R+FQALRI VN+E+    + L +A  AL+ G
Sbjct: 189 PFDTSPRLVDLVRRSIPAAARRTGGNPAKRTFQALRIEVNDELGAYERALPAALSALRPG 248

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDV 300
           G ++V+++HSLEDR+ K+ FA R       R +  +P+  H A F+S+T+   + +  ++
Sbjct: 249 GRVVVLAYHSLEDRITKRTFA-RITTTQVPRDLPFVPAG-HAAEFRSLTRGAELASPAEI 306

Query: 301 AFNRRSRSAKLRA 313
             N R++S +LRA
Sbjct: 307 DENPRAQSVRLRA 319


>gi|165975468|ref|YP_001651061.1| S-adenosyl-methyltransferase MraW [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|263446591|sp|B0BRG9|RSMH_ACTPJ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|165875569|gb|ABY68617.1| S-adenosyl-methyltransferase [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
          Length = 313

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 124/313 (39%), Positives = 181/313 (57%), Gaps = 18/313 (5%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPF 69
           ++ T+  H+ VLL + +  L   P  + +D TFG GG+SR      S    +IA DRDP 
Sbjct: 1   MNDTVHKHITVLLHEAVDGLAIKPNGIYIDGTFGRGGHSRLILSKLSEQGRLIATDRDPR 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGF 125
           A++    T+ D +  F +    FS + D     G    +DG++ DLGVSS Q+D  +RGF
Sbjct: 61  AIAEAN-TIDDTR--FQIVHTAFSAIPDVCEQLGLTGKIDGILLDLGVSSPQLDDAERGF 117

Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF + GPLDMRM  + G+SA++ + Q +  DL  +L   GEE+ A RIA A+V   +S  
Sbjct: 118 SFMRDGPLDMRMDTTKGLSAAEWLAQVSADDLAWVLKTFGEERFAKRIAQAVVSYNKSVT 177

Query: 185 --FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
                T  L+ +I   V F K+   HPATRSFQA+RIF+N+E++EL + L+SA   L   
Sbjct: 178 DKISRTLQLAQIIADAVPF-KDKHKHPATRSFQAIRIFINSELDELEKALQSALSVLAPE 236

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP---SNAHPAVFQSITKKVVVPTQED 299
           G L ++SFHSLEDR+VK+F   ++ K M V   +P   S  +  +   I  K ++P++ +
Sbjct: 237 GRLSIISFHSLEDRMVKQFM-KKNSKGMDVPKGLPILESELNKNIPLKIIGKAIMPSEAE 295

Query: 300 VAFNRRSRSAKLR 312
           +  N RSRSA LR
Sbjct: 296 IEANPRSRSAVLR 308


>gi|78221625|ref|YP_383372.1| S-adenosyl-methyltransferase MraW [Geobacter metallireducens GS-15]
 gi|123572785|sp|Q39YM7|RSMH_GEOMG RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|78192880|gb|ABB30647.1| methyltransferase [Geobacter metallireducens GS-15]
          Length = 313

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 120/306 (39%), Positives = 182/306 (59%), Gaps = 14/306 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+ V+  +V+ALL+P PG V +D T G  G++R   +  S    ++  DRDP A++   +
Sbjct: 6   HLSVMPAEVLALLSPRPGGVYVDGTLGGAGHARMILEASSPDGVLVGFDRDPEALAAASK 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  + ++  L ++ F+ + + +   G+D   G + DLGVSS Q+D  +RGFSFQ   PL
Sbjct: 66  RIASFGDRVRLVRSNFAAMDESLATLGIDTIDGFLLDLGVSSHQLDTAERGFSFQVDAPL 125

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK-RRQSAPFQTTQDL 191
           DMRM   +G +A+D+VN+ +  +L RI+   GEE+ A RIA  +VK R Q  P ++T  L
Sbjct: 126 DMRMDPETGETAADLVNELSADELARIIREYGEERWAKRIASFVVKAREQHGPIESTLQL 185

Query: 192 SSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
              ++  +   +   RIHPATR+FQALRI VN+E+  L +GL +  + L  GG  +V+SF
Sbjct: 186 VDCVKGAIPRAAWEERIHPATRTFQALRIAVNDELGSLERGLVAGIERLAPGGRGVVISF 245

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIP---SNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           HSLEDR+VK  F  R  +      M+P       P V + +T K V+   ++VA N R+R
Sbjct: 246 HSLEDRIVKTVF-RRYAQGCTCPKMLPRCVCGNKPRV-RILTGKPVMAGGDEVATNPRAR 303

Query: 308 SAKLRA 313
           SAK+RA
Sbjct: 304 SAKVRA 309


>gi|28897226|ref|NP_796831.1| S-adenosyl-methyltransferase MraW [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153839039|ref|ZP_01991706.1| S-adenosyl-methyltransferase MraW [Vibrio parahaemolyticus AQ3810]
 gi|260366064|ref|ZP_05778530.1| S-adenosyl-methyltransferase MraW [Vibrio parahaemolyticus K5030]
 gi|260878319|ref|ZP_05890674.1| S-adenosyl-methyltransferase MraW [Vibrio parahaemolyticus AN-5034]
 gi|260896408|ref|ZP_05904904.1| S-adenosyl-methyltransferase MraW [Vibrio parahaemolyticus
           Peru-466]
 gi|260899187|ref|ZP_05907582.1| S-adenosyl-methyltransferase MraW [Vibrio parahaemolyticus AQ4037]
 gi|33301414|sp|Q9AJH1|RSMH_VIBPA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|13537263|dbj|BAB40616.1| hypothetical protein [Vibrio parahaemolyticus]
 gi|28805435|dbj|BAC58715.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149747467|gb|EDM58415.1| S-adenosyl-methyltransferase MraW [Vibrio parahaemolyticus AQ3810]
 gi|308087564|gb|EFO37259.1| S-adenosyl-methyltransferase MraW [Vibrio parahaemolyticus
           Peru-466]
 gi|308093183|gb|EFO42878.1| S-adenosyl-methyltransferase MraW [Vibrio parahaemolyticus AN-5034]
 gi|308107133|gb|EFO44673.1| S-adenosyl-methyltransferase MraW [Vibrio parahaemolyticus AQ4037]
 gi|308111365|gb|EFO48905.1| S-adenosyl-methyltransferase MraW [Vibrio parahaemolyticus K5030]
          Length = 316

 Score =  200 bits (509), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 126/309 (40%), Positives = 179/309 (57%), Gaps = 20/309 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H+ VLL + I  L   P  + +D TFG GG+SR+   K+G N  + ++DRDP A++   E
Sbjct: 7   HISVLLNESIDGLAIKPDGIYIDGTFGRGGHSRTILSKLGPNGRLYSIDRDPQAIA---E 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +    +F++    FS +  Y  +      VDGV+ DLGVSS Q+D  +RGFSF K GP
Sbjct: 64  AGKIDDPRFTIIHGPFSGMAQYAEEYDLVGKVDGVLLDLGVSSPQLDDAERGFSFMKDGP 123

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---PFQTT 188
           LDMRM   SGI  S  + +A++ D+T ++   GE+K A RIA AIV+ R++    P   T
Sbjct: 124 LDMRMDPTSGIPVSQWLMEADLDDITWVIREFGEDKHARRIARAIVEYRENEENEPMVRT 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ LI +    S   + HPATR+FQA RI++N+E+EE+   L+ A + L   G L V+
Sbjct: 184 GQLAKLISEAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAARILAPEGRLSVI 243

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSITKKVV----VPTQEDVAFN 303
           SFHSLEDR+VK+F    S K   V H IP + A      S   K V     P+++++  N
Sbjct: 244 SFHSLEDRMVKRFIRKES-KGPEVPHGIPLTEAQIKELGSANMKTVGKAIKPSKQEIDMN 302

Query: 304 RRSRSAKLR 312
            RSRS+ LR
Sbjct: 303 PRSRSSVLR 311


>gi|317154466|ref|YP_004122514.1| S-adenosyl-methyltransferase MraW [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316944717|gb|ADU63768.1| S-adenosyl-methyltransferase MraW [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 325

 Score =  200 bits (509), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 124/309 (40%), Positives = 174/309 (56%), Gaps = 14/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQE 76
           H  VLL +VI  L P PG   LD T G GG+S +  +    G+ +  LDRD  A++   E
Sbjct: 11  HTTVLLHEVIEWLRPKPGGRYLDGTLGMGGHSHALLERAGQGAELAGLDRDAQALALAGE 70

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +    ++  LF+  FS+ ++ +   G   VDG V DLGVSS+Q+D  +RGFSF   GPL
Sbjct: 71  RLAGMGDRAHLFRLPFSRFEEALDALGWETVDGAVLDLGVSSLQLDEAERGFSFLSDGPL 130

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM    G SA+D+VN     DL RI+   GE+  A +IA AI++ R       T  L+
Sbjct: 131 DMRMDPDCGPSAADLVNTLKHGDLARIIRTWGEDPLAGKIASAILRARDKEAIMRTLRLA 190

Query: 193 SLIQKTVYFSK---NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            ++ +  Y  K     R HPATR+FQ LRI VN E EEL   L++    L  G  L ++S
Sbjct: 191 EIV-RLAYPPKMRHTARNHPATRTFQGLRIAVNREAEELEHYLQAIVGRLAPGARLAIIS 249

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           FHSLEDR VK+ F + +       H +    N  P++ + +T+K ++P+ +++A N RSR
Sbjct: 250 FHSLEDRAVKRAFLADAKGCHCPPHQMHCTCNGVPSL-KVLTRKPLIPSDDEMARNPRSR 308

Query: 308 SAKLRAGMR 316
           SAKLR   R
Sbjct: 309 SAKLRVAER 317


>gi|238797714|ref|ZP_04641209.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia
           mollaretii ATCC 43969]
 gi|238718466|gb|EEQ10287.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia
           mollaretii ATCC 43969]
          Length = 320

 Score =  200 bits (508), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 122/311 (39%), Positives = 179/311 (57%), Gaps = 15/311 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN     + +D TFG GG+SR    ++G    +IA+DRDP A+   + 
Sbjct: 14  HTSVLLDEAVNGLNIRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDRDPQAIEAAKS 73

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  +FS+    FS+L  YV +      +DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 74  IT---DPRFSIVHGPFSELAHYVRELDLVGRIDGILLDLGVSSPQLDDPERGFSFMRDGP 130

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G+SA++ + +A+  D+  +L   GEE+ A R+A AIV+R  + P   T++L
Sbjct: 131 LDMRMDPSRGLSAAEWLMKASADDIAWVLKTFGEERFAKRLAKAIVERNLTQPMTRTKEL 190

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI     F + ++ HPATRSFQA+RI++N+E+EE+ + L  A + L   G L V+SFH
Sbjct: 191 ADLIANASPFREKHK-HPATRSFQAIRIYINSELEEIERALDGAHEVLAPEGRLSVISFH 249

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNRRSRS 308
           SLEDR+VK F   RS        +  + A        T K +   +P   +VA N R+RS
Sbjct: 250 SLEDRIVKNFIRQRSRGPQVPAGLPLTEAQLRSMGGRTMKSIGKMMPADAEVAENPRARS 309

Query: 309 AKLRAGMRTVE 319
           + LR   R  E
Sbjct: 310 SVLRFAERIKE 320


>gi|261345652|ref|ZP_05973296.1| S-adenosyl-methyltransferase MraW [Providencia rustigianii DSM
           4541]
 gi|282566134|gb|EFB71669.1| S-adenosyl-methyltransferase MraW [Providencia rustigianii DSM
           4541]
          Length = 317

 Score =  200 bits (508), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 129/317 (40%), Positives = 179/317 (56%), Gaps = 24/317 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           HV VLL++ +  LN  P  + +D TFG GG+SR    ++G N  +IA+DRDP A+   QE
Sbjct: 8   HVTVLLDEAVNGLNLKPNGIYIDGTFGRGGHSRLILSQLGENGRLIAIDRDPEAIKAAQE 67

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  +F +    FS + DY  ++G    +DGV+ DLGVSS Q+D  +RGFSF + GP
Sbjct: 68  I---DDPRFMIKHGPFSAIADYAEEEGLVGKIDGVLLDLGVSSPQLDDAERGFSFMRDGP 124

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR---QSAPFQTT 188
           LDMRM  + G SA+  +  A   D+  +L   GEE+ A RIA AIV+R    +  P   T
Sbjct: 125 LDMRMDPTHGQSAAQWLMTAEADDIAWVLKTFGEERFAKRIARAIVERNHNPEEEPLTRT 184

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           + L+ LI K V   K+   HPATRSFQA+RI++N+E+EE+ + L  A   L   G L V+
Sbjct: 185 RHLAELIAK-VSPMKDRHKHPATRSFQAIRIYINSELEEIEKALNGAMSVLAPEGRLSVI 243

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIP------SNAHPAVFQSITKKVVVPTQEDVAF 302
           SFHSLEDRLVK+F    S    +V   IP           A  + + K  + P+  ++  
Sbjct: 244 SFHSLEDRLVKRFIRQHSSGP-SVPPGIPLTEAQIKELGAAKLRGLGK--MKPSDSEIDE 300

Query: 303 NRRSRSAKLRAGMRTVE 319
           N R+RS+ LR   R  E
Sbjct: 301 NPRARSSVLRFAERAPE 317


>gi|73542671|ref|YP_297191.1| S-adenosyl-methyltransferase MraW [Ralstonia eutropha JMP134]
 gi|88909215|sp|Q46WY6|RSMH_RALEJ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|72120084|gb|AAZ62347.1| methyltransferase [Ralstonia eutropha JMP134]
          Length = 332

 Score =  200 bits (508), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 125/315 (39%), Positives = 191/315 (60%), Gaps = 35/315 (11%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  V +D TFG GG+SR+   ++G +  ++A D+DP A++    
Sbjct: 14  HRTVLLDEAVEALVWRPDGVYVDGTFGRGGHSRAVLARLGPDGALVAFDKDPAAIAEAG- 72

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           T++D +  FS+   +F+ + + +  +G V GV+ DLG+SS QID   RGFSF+  GPLDM
Sbjct: 73  TIQDAR--FSIEHESFAAMGERLAGRGHVAGVLLDLGISSPQIDEAARGFSFRFEGPLDM 130

Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ----SAPFQTTQD 190
           RM  + GI+A++ + QA  +D+ R++   GEE+ A +IA AIV RR+      P  TT D
Sbjct: 131 RMDTTRGITAAEWLAQAEEQDIARVIRDYGEERFAVQIAKAIVARRREPGDGGPLATTAD 190

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L++L+ K V   +  +  PATR+FQALRI +N E+E+L +GL++A   L+ GG L+V+SF
Sbjct: 191 LAALVAKAVKTREKGQ-DPATRTFQALRIHINQELEDLERGLKAAYDLLQVGGRLVVISF 249

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSITKKV------------VVPTQ 297
           HSLEDR+VK+F A+         H  P  +A PA+ ++  +              V P  
Sbjct: 250 HSLEDRIVKRFMAA---------HARPQQDADPALRRAPLRAADLPQPTLRLLGRVKPGA 300

Query: 298 EDVAFNRRSRSAKLR 312
           ++VA N R+RSA +R
Sbjct: 301 QEVADNPRARSAVMR 315


>gi|303232694|ref|ZP_07319379.1| S-adenosyl-methyltransferase MraW [Atopobium vaginae PB189-T1-4]
 gi|302481180|gb|EFL44255.1| S-adenosyl-methyltransferase MraW [Atopobium vaginae PB189-T1-4]
          Length = 316

 Score =  200 bits (508), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 120/305 (39%), Positives = 179/305 (58%), Gaps = 12/305 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF----CKMGSNVIALDRDPFAVSCGQ 75
           H+PV+L++ +A LNP PG+++ D T GA G++ +     C  G ++     D    +  Q
Sbjct: 7   HIPVMLQETLAYLNPKPGEIVCDCTLGAAGHTVALAERICPDGLSIGIDQDDAAIAAATQ 66

Query: 76  ETMRDYKE-QFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
              R     Q+   Q  FSQ+ + +      GVD V+FDLGVSS Q+D   RGFS+ ++ 
Sbjct: 67  HITRACPTAQYRFLQGNFSQIDELLLKAEVVGVDCVLFDLGVSSPQLDIPSRGFSYHENA 126

Query: 132 PLDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
           PLDMRM    + ++A++V+N  N  DLTRIL + G+EK A +IA  IVK RQ+   +TT 
Sbjct: 127 PLDMRMDPRNNTLNAAEVINTYNEADLTRILRVFGDEKFAPQIARRIVKERQTKAIETTF 186

Query: 190 DLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I+ ++   ++ +  HPA ++FQA+RI VN+E++ L  GL  A   L  GG + V+
Sbjct: 187 ELVDIIKASIPAAARRHAKHPARKTFQAIRIEVNHELDVLQVGLERAIAWLNTGGRMCVI 246

Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           S+HSLEDRLVK  FA  + G V  V   +       +   ITKK +  + E+VA N R+R
Sbjct: 247 SYHSLEDRLVKHVFAQYARGCVCPVDLPVCVCHKKPIIDVITKKPLYASDEEVARNPRAR 306

Query: 308 SAKLR 312
           SA +R
Sbjct: 307 SACMR 311


>gi|331696613|ref|YP_004332852.1| ribosomal RNA small subunit methyltransferase H [Pseudonocardia
           dioxanivorans CB1190]
 gi|326951302|gb|AEA24999.1| Ribosomal RNA small subunit methyltransferase H [Pseudonocardia
           dioxanivorans CB1190]
          Length = 326

 Score =  200 bits (508), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 121/310 (39%), Positives = 179/310 (57%), Gaps = 10/310 (3%)

Query: 20  HVPVLLEKVIALLNPA-PGK--VILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           HVPVLL +V+ LL PA  G+  V++DAT G GG+S +         ++ LDRDP A+   
Sbjct: 15  HVPVLLPRVLELLGPALAGRPAVVVDATLGLGGHSAALLAAHPELTLVGLDRDPQALELA 74

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
              +  + ++  L  A + ++ D + +    G DGV+FDLGVSS+Q+D  +RGFS+ +  
Sbjct: 75  GRRLVAFADRTHLVHAVYDRIADVLAELGLPGADGVLFDLGVSSLQLDADERGFSYSRDA 134

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM   +G +A+DV+N   V +L RIL   GEE+ A RIA AI + R   PF  + +
Sbjct: 135 DLDMRMDPTTGPTAADVLNTYAVPELARILREYGEERFAGRIAAAIGRARDRRPFTRSSE 194

Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  L+ +TV   S+    HPA R+FQALRI VN E++ L   + +A  +L  GG ++V+S
Sbjct: 195 LVELLYETVPAASRRTGGHPAKRTFQALRIEVNGELDALRAAVPAAIDSLTVGGRIVVLS 254

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           +HSLEDRLVK+  A+RS         +    H    + + +     ++E+V  N R+ S 
Sbjct: 255 YHSLEDRLVKRELAARSVSTTPQDLPVELPGHGPELRLLVRGSQQASEEEVGENPRAASV 314

Query: 310 KLRAGMRTVE 319
           +LRA  R  E
Sbjct: 315 RLRAAERIRE 324


>gi|261211507|ref|ZP_05925795.1| S-adenosyl-methyltransferase MraW [Vibrio sp. RC341]
 gi|262404723|ref|ZP_06081278.1| S-adenosyl-methyltransferase MraW [Vibrio sp. RC586]
 gi|260839462|gb|EEX66088.1| S-adenosyl-methyltransferase MraW [Vibrio sp. RC341]
 gi|262349755|gb|EEY98893.1| S-adenosyl-methyltransferase MraW [Vibrio sp. RC586]
          Length = 316

 Score =  200 bits (508), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 124/309 (40%), Positives = 176/309 (56%), Gaps = 20/309 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H+ VLL + I  L   P  + +D TFG GG+SR+   ++G    + ++DRDP A++  Q+
Sbjct: 7   HISVLLNESIEGLAIKPDGIYIDGTFGRGGHSRTILAQLGPQGRLYSIDRDPQAIAEAQK 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  +F++    FS + +Y         VDGV+FDLGVSS Q+D  +RGFSF K GP
Sbjct: 67  I---DDPRFTIVHGPFSGIAEYAQRYDLVGKVDGVLFDLGVSSPQLDDAERGFSFMKDGP 123

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---PFQTT 188
           LDMRM   SG+  S+ + QA++ D+T ++   GE+K A RIA AIV+ R++    P   T
Sbjct: 124 LDMRMDPTSGMPVSEWLAQADLDDITWVIREFGEDKHARRIAKAIVEYRENELNEPLTRT 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ LI      S   + HPATR+FQA RI++N+E+EE+   LR A   L   G L V+
Sbjct: 184 SQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALRGASDILAPQGRLSVI 243

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSN-----AHPAVFQSITKKVVVPTQEDVAFN 303
           SFHSLEDR+VK+F    S +   V H IP       A  +       K + P+ ++V  N
Sbjct: 244 SFHSLEDRMVKRFMRKES-QGPQVPHGIPLTQDQIRALGSAKMKTVGKALKPSDQEVELN 302

Query: 304 RRSRSAKLR 312
            RSRS+ LR
Sbjct: 303 PRSRSSVLR 311


>gi|119717295|ref|YP_924260.1| S-adenosyl-methyltransferase MraW [Nocardioides sp. JS614]
 gi|262824666|sp|A1SL88|RSMH_NOCSJ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|119537956|gb|ABL82573.1| S-adenosyl-methyltransferase MraW [Nocardioides sp. JS614]
          Length = 319

 Score =  200 bits (508), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 121/309 (39%), Positives = 182/309 (58%), Gaps = 12/309 (3%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74
           HVPVLL++V+ALL P     G V++DAT G GG++ +       + V+ +DRDP A++  
Sbjct: 6   HVPVLLDRVVALLAPPLEREGSVLVDATLGLGGHTEAVLTRFDLARVVGIDRDPEALALA 65

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
              +  + ++F+   A + +L D +   G   VD V+FDLGVSSMQ+D  +RGF++ +  
Sbjct: 66  GRRLAPFGDRFTGVHAVYDELPDVLARLGLDAVDAVLFDLGVSSMQLDVRERGFAYAEDA 125

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  S G +A+DV+N     DL RIL   GEE+ A +IA A+V+ R   PF  +  
Sbjct: 126 PLDMRMDGSTGPTAADVLNTYAAADLARILREYGEERFARKIAAAVVRERAKEPFTRSGR 185

Query: 191 LSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  L+   +   ++    HPA R+FQALR+ VN+E+  L + + +A  A+  GG ++V S
Sbjct: 186 LVELLYAEIPAPARRTGGHPAKRTFQALRMEVNDELAVLRRAIPAAIDAIGVGGRVVVES 245

Query: 250 FHSLEDRLVKK-FFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           +HSLEDRLVK+ F A+    V      +P+   PA  + +T+       E++A N R+ S
Sbjct: 246 YHSLEDRLVKQAFVAASRLDVPEDLPFVPAGHEPA-LRLVTRGAEKAGPEEIALNPRAAS 304

Query: 309 AKLRAGMRT 317
            +LRA  RT
Sbjct: 305 VRLRAIERT 313


>gi|41396357|gb|AAS04222.1| hypothetical protein MAP_1905c [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 386

 Score =  200 bits (508), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 122/316 (38%), Positives = 181/316 (57%), Gaps = 18/316 (5%)

Query: 20  HVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPF 69
           HVPVLLE+ + LL PA         G V+LDAT GAGG++  F     G  +IALDRDP 
Sbjct: 61  HVPVLLERCVELLTPALTRRHPDGSGAVLLDATLGAGGHAERFLADLPGLRLIALDRDPS 120

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQL------QDYVPDKGVDGVVFDLGVSSMQIDCGDR 123
           A+   +E +  + ++ +L    +  +        Y   + VDG++FDLGVSSMQ+D  +R
Sbjct: 121 ALEIARERLARFADRITLVHMRYDGIAAALTESGYAATESVDGILFDLGVSSMQLDRPER 180

Query: 124 GFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GF++ +  PLDMRM   S ++A+D++N  +  +L  IL   GEE+ A RIA  IV+RR  
Sbjct: 181 GFAYAQDAPLDMRMDPGSPLTAADILNTYDEAELADILHRYGEERFARRIAAQIVRRRAK 240

Query: 183 APFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            PF +T DL SL+ + +   ++    HPA R+FQALRI VN+E++ L + L +A  AL  
Sbjct: 241 EPFTSTADLVSLLYQAIPAPARRTGGHPAKRTFQALRIAVNDELDTLRRALPAALDALAV 300

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
            G ++V+++ SLEDR+VK+ FA        V   +    H   F+++T         ++ 
Sbjct: 301 DGRIVVLAYQSLEDRIVKRLFAQAVASRTPVDLPVELPGHEPRFRALTHGAGRADAAEIE 360

Query: 302 FNRRSRSAKLRAGMRT 317
            N RS + +LRA  RT
Sbjct: 361 RNPRSAAVRLRALQRT 376


>gi|59712816|ref|YP_205592.1| S-adenosyl-methyltransferase MraW [Vibrio fischeri ES114]
 gi|68565406|sp|Q5E2P2|RSMH_VIBF1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|59480917|gb|AAW86704.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Vibrio fischeri ES114]
          Length = 316

 Score =  200 bits (508), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 127/313 (40%), Positives = 178/313 (56%), Gaps = 20/313 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           HV VLL + I  L   P  + +D TFG GG+SR    ++G N  + ++DRDP A++  + 
Sbjct: 7   HVSVLLHESIDGLAIKPDGIYIDGTFGRGGHSRQILSQLGENGRLYSIDRDPQAIAEAK- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           T+ D K  F++    FS L+ YV +      +DGV+ DLGVSS Q+D  +RGFSF K GP
Sbjct: 66  TITDPK--FTIIHGPFSGLKQYVEELDLVGKIDGVLLDLGVSSPQLDDAERGFSFMKDGP 123

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV---KRRQSAPFQTT 188
           LDMRM   SGI  S  + +A+V+D+T ++   GE+K A RIA  IV   +  ++ P   T
Sbjct: 124 LDMRMDPTSGIPVSQWLQEADVEDITWVIREFGEDKHAWRIAKGIVAYLENEENEPLTRT 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ LI +    S   + HPATR+FQA RI++N+E++E+   L+ A   L   G L V+
Sbjct: 184 SQLAKLISEVAPKSFKEKKHPATRAFQAFRIYINSELDEIDTALKGALDVLAPEGRLSVI 243

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSN-----AHPAVFQSITKKVVVPTQEDVAFN 303
           SFHSLEDR+VK F    S K   V H +P       A  +       K + PT+ +V  N
Sbjct: 244 SFHSLEDRMVKHFIRKES-KGPQVPHGLPLTEEQIKALGSAKMKPVGKAIKPTKNEVNEN 302

Query: 304 RRSRSAKLRAGMR 316
            RSRS+ LR   R
Sbjct: 303 VRSRSSVLRIAER 315


>gi|264680254|ref|YP_003280164.1| S-adenosyl-methyltransferase MraW [Comamonas testosteroni CNB-2]
 gi|262210770|gb|ACY34868.1| S-adenosyl-methyltransferase MraW [Comamonas testosteroni CNB-2]
          Length = 309

 Score =  200 bits (508), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 132/307 (42%), Positives = 183/307 (59%), Gaps = 17/307 (5%)

Query: 20  HVPVLL-EKVIALLNPA---PGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVS 72
           H+ VLL E V ALL  A   P    +DATFG GG+SR    ++G +  +IA D+DP A++
Sbjct: 7   HITVLLDEAVDALLGGAAKPPAGQWVDATFGRGGHSRLILQRLGPDGRLIAFDKDPDAIA 66

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              E  R    +FS+    F  L + +P+  V GV+ DLGVSS QID  DRGFSF+  GP
Sbjct: 67  ---EAARITDARFSIRHEGFRHLGE-LPEGSVQGVLMDLGVSSPQIDNPDRGFSFRFDGP 122

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQTTQD 190
           LDMRM  + G S ++ +  A V+ +  ++   GEE+ A  IA AIV RR+S  P +TT +
Sbjct: 123 LDMRMDTTRGQSVAEWLEDAEVQQIAEVIRDYGEERFAGPIAKAIVARRESQGPLRTTAE 182

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ L+   V   +  + +PATR+FQALRIF+N E++EL Q L ++ + L  GG L V+SF
Sbjct: 183 LAQLVAGAVKTREAGQ-NPATRTFQALRIFINAELQELEQALEASLRVLAPGGRLAVISF 241

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDR+VK+F A  S +V   R      A PA  +    + + P+  +V  N RSRSA 
Sbjct: 242 HSLEDRIVKQFIAKHSKEVYDRRAPF---APPAPMRLKALERIKPSAAEVDANPRSRSAV 298

Query: 311 LRAGMRT 317
           +R   RT
Sbjct: 299 MRVAERT 305


>gi|294101810|ref|YP_003553668.1| S-adenosyl-methyltransferase MraW [Aminobacterium colombiense DSM
           12261]
 gi|293616790|gb|ADE56944.1| S-adenosyl-methyltransferase MraW [Aminobacterium colombiense DSM
           12261]
          Length = 300

 Score =  200 bits (508), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 118/307 (38%), Positives = 190/307 (61%), Gaps = 26/307 (8%)

Query: 19  DHVPVLLEKVI-ALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQ 75
           +H+PV+L++VI +L N    ++I+DAT G GGY+     +   + ++ +DRD  A+S  Q
Sbjct: 3   EHIPVMLKEVIESLKNVESPQMIVDATLGLGGYAEEILNVFPATLLVGIDRDEQAISLAQ 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGV--DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           + +  + E+  ++ + FS +   +  +    DG+VFDLGVS++Q+   +RGFSFQ  GPL
Sbjct: 63  KRLVSFAERVHIYNSPFSAIAMVLSKENAEPDGIVFDLGVSNLQLSSPERGFSFQNDGPL 122

Query: 134 DMRMSC----SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK-RRQSAPFQTT 188
           DMRM      SG SA+ +VN  + K+L  I    GEE+ + RIA  IV+ R ++ P Q T
Sbjct: 123 DMRMEGTSGESGYSAAQIVNTFSEKELADIFWKYGEERYSRRIATGIVRFREKNGPIQRT 182

Query: 189 QDLSSLIQKTVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
             L   I+ ++      ++  HPA + FQALRIFVN+E++EL +GL+ A ++L  GG+++
Sbjct: 183 FQLVEAIRSSLPAPVQRKMGGHPARKVFQALRIFVNDELQELEKGLQGALESLAPGGVIV 242

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           VVS+HSLEDR+VK  +A +  K         ++ H  +   +T++ + P++E+V  N ++
Sbjct: 243 VVSYHSLEDRIVK--YAMKDWK---------TSDHGDL---LTRRPLKPSEEEVEKNYKA 288

Query: 307 RSAKLRA 313
           RSAKLRA
Sbjct: 289 RSAKLRA 295


>gi|297161278|gb|ADI10990.1| S-adenosyl-methyltransferase MraW [Streptomyces bingchenggensis
           BCW-1]
          Length = 320

 Score =  200 bits (508), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 120/311 (38%), Positives = 181/311 (58%), Gaps = 12/311 (3%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74
           HVPV+L++ + +L PA   PG V++D T G GG+S +  +    + ++ALDRDP A+   
Sbjct: 7   HVPVMLQRCLDMLAPALERPGAVVVDCTLGLGGHSEALLRTFPEARLVALDRDPAALELS 66

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
              +  Y ++ +L  A + +L + +   G   V G++FDLGVSSMQ+D  +RGF++ +  
Sbjct: 67  GARLAPYGDRATLVHAVYDELPEVLARLGIPRVQGILFDLGVSSMQLDEAERGFAYAQDA 126

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM   +GISA++V+N     +L RIL   GEEK A +I  A+V+ R   PF  +  
Sbjct: 127 PLDMRMDQTTGISAAEVLNTYPPGELVRILRTYGEEKFARKIVDAVVRERAKEPFHNSAR 186

Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  LI+  +   +K    +PA R+FQALRI VN E+  L + + +A  AL  GG + V+S
Sbjct: 187 LVELIRAALPQAAKRTGGNPAKRTFQALRIEVNGELTVLERAIPAAVAALAVGGRIAVLS 246

Query: 250 FHSLEDRLVKKFF-ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           +HSLEDRLVK    A           ++P    P   + +T+   +PT+E++A NRR+  
Sbjct: 247 YHSLEDRLVKHVLGAGAETTAPPGLPVVPERYQPR-LKLLTRGAELPTEEEIAENRRAAP 305

Query: 309 AKLRAGMRTVE 319
           A+LR   R  E
Sbjct: 306 ARLRGAERIRE 316


>gi|161611203|ref|NP_960839.2| S-adenosyl-methyltransferase MraW [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|88911700|sp|P62474|RSMH_MYCPA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 335

 Score =  200 bits (508), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 122/316 (38%), Positives = 181/316 (57%), Gaps = 18/316 (5%)

Query: 20  HVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPF 69
           HVPVLLE+ + LL PA         G V+LDAT GAGG++  F     G  +IALDRDP 
Sbjct: 10  HVPVLLERCVELLTPALTRRHPDGSGAVLLDATLGAGGHAERFLADLPGLRLIALDRDPS 69

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQL------QDYVPDKGVDGVVFDLGVSSMQIDCGDR 123
           A+   +E +  + ++ +L    +  +        Y   + VDG++FDLGVSSMQ+D  +R
Sbjct: 70  ALEIARERLARFADRITLVHMRYDGIAAALTESGYAATESVDGILFDLGVSSMQLDRPER 129

Query: 124 GFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GF++ +  PLDMRM   S ++A+D++N  +  +L  IL   GEE+ A RIA  IV+RR  
Sbjct: 130 GFAYAQDAPLDMRMDPGSPLTAADILNTYDEAELADILHRYGEERFARRIAAQIVRRRAK 189

Query: 183 APFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            PF +T DL SL+ + +   ++    HPA R+FQALRI VN+E++ L + L +A  AL  
Sbjct: 190 EPFTSTADLVSLLYQAIPAPARRTGGHPAKRTFQALRIAVNDELDTLRRALPAALDALAV 249

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
            G ++V+++ SLEDR+VK+ FA        V   +    H   F+++T         ++ 
Sbjct: 250 DGRIVVLAYQSLEDRIVKRLFAQAVASRTPVDLPVELPGHEPRFRALTHGAGRADAAEIE 309

Query: 302 FNRRSRSAKLRAGMRT 317
            N RS + +LRA  RT
Sbjct: 310 RNPRSAAVRLRALQRT 325


>gi|253988586|ref|YP_003039942.1| S-adenosyl-methyltransferase MraW [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253780036|emb|CAQ83197.1| s-adenosyl-l-methionine-dependent methyltransferase [Photorhabdus
           asymbiotica]
          Length = 314

 Score =  200 bits (508), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 127/313 (40%), Positives = 179/313 (57%), Gaps = 19/313 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76
           H  VLL++ +  LN     + +D TFG GG+SR   S   M   +IA+DRDP A+   + 
Sbjct: 8   HTSVLLDEAVNGLNIRKDGIYIDGTFGRGGHSRLILSQLGMEGRLIAIDRDPQAIETAKS 67

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  +FS+    FS+L  YV + G    +DGV+ DLGVSS Q+D  +RGFSF + GP
Sbjct: 68  IT---DPRFSIIHGPFSELAHYVENAGLTGKIDGVLLDLGVSSPQLDDPERGFSFMRDGP 124

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G SA++ + +A   D+  +L   GEE+ A RIA AIV R Q  P   T+ L
Sbjct: 125 LDMRMDPTHGQSAAEWLMKAEADDIAWVLKTFGEERFAKRIAKAIVTRNQEEPITRTKVL 184

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI +     +  + HPATRSFQA+RI++N+E+EE+ Q L  A + L   G L V+SFH
Sbjct: 185 ADLIAQASPVKEKYK-HPATRSFQAIRIYINSELEEIEQALDGALQVLAPRGRLSVISFH 243

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306
           SLEDR+VK+F    SR  +V A   +             +SI K  + P++ +VA N R+
Sbjct: 244 SLEDRIVKRFIRHNSRGPQVPAGLPLTEEQLKAQGGRSLKSIGK--MKPSENEVADNPRA 301

Query: 307 RSAKLRAGMRTVE 319
           RS+ LR   +  E
Sbjct: 302 RSSVLRFAEKVSE 314


>gi|261253815|ref|ZP_05946388.1| S-adenosyl-methyltransferase MraW [Vibrio orientalis CIP 102891]
 gi|260937206|gb|EEX93195.1| S-adenosyl-methyltransferase MraW [Vibrio orientalis CIP 102891]
          Length = 324

 Score =  200 bits (508), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 127/315 (40%), Positives = 176/315 (55%), Gaps = 32/315 (10%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H+ VLL + I  L   P  + +D TFG GG+SR+   K+G N  + ++DRDP A++   E
Sbjct: 15  HISVLLHESIDGLAIKPDGIYIDGTFGRGGHSRTILSKLGDNGRLYSIDRDPQAIA---E 71

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +    +F++    FS +  Y  +      VDGV+ DLGVSS Q+D  +RGFSF K GP
Sbjct: 72  AGKIDDPRFTIIHGPFSGMAQYAAEYDLVGKVDGVLLDLGVSSPQLDDAERGFSFMKDGP 131

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---PFQTT 188
           LDMRM   SGI  S  + +A++ D+T ++   GE+K A RIA AIV  R++    P   T
Sbjct: 132 LDMRMDPTSGIPVSQWLMEADLDDITWVIREFGEDKHARRIAKAIVAYRENEENEPMTRT 191

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ LI      S   + HPATRSFQA RI++N+E+EE+   L+ A   L   G L V+
Sbjct: 192 GQLAKLISDAAPKSFKEKKHPATRSFQAFRIYINSELEEIDTALKGAASILAPEGRLSVI 251

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIP-----------SNAHPAVFQSITKKVVVPTQ 297
           SFHSLEDR+VK+F    S K   V H IP           +N  P        K + P++
Sbjct: 252 SFHSLEDRMVKRFIRKES-KGPEVPHGIPMTEDQIKALGSANLKP------VGKAIKPSK 304

Query: 298 EDVAFNRRSRSAKLR 312
           ++V  N RSRS+ LR
Sbjct: 305 QEVEENTRSRSSVLR 319


>gi|304413635|ref|ZP_07395079.1| S-adenosyl-dependent methyltransferase [Candidatus Regiella
           insecticola LSR1]
 gi|304283726|gb|EFL92120.1| S-adenosyl-dependent methyltransferase [Candidatus Regiella
           insecticola LSR1]
          Length = 313

 Score =  199 bits (507), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 122/308 (39%), Positives = 177/308 (57%), Gaps = 15/308 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLLE+ +  LN     + +D TFG GG+SR    ++G    +IA+DRDP AV   + 
Sbjct: 7   HESVLLEQAVHCLNLRDDGIYVDGTFGLGGHSRLILSRLGQQGRLIAIDRDPQAVEVAKS 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  +FS+    FS+L  Y  +      +DGV+FDLGVSS Q+D   RGFSF + GP
Sbjct: 67  IT---DPRFSIIHGPFSELARYAQESDLIGRIDGVLFDLGVSSPQLDNPQRGFSFMRDGP 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G+SA+  + +A+  ++  +L   GEE+ A R+A AIV+R Q  P   TQ+L
Sbjct: 124 LDMRMDPSRGLSAAQWLMKASADEIAWVLKTFGEERFAKRLARAIVERNQQQPMHRTQEL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI   +   + ++ HPATRSFQA+RI++N+E+EE+ + L ++   L   G + V+SFH
Sbjct: 184 ADLIVNILPMREKHK-HPATRSFQAIRIYINSELEEITRALEASLSVLAPKGRISVISFH 242

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV---VVPTQEDVAFNRRSRS 308
           SLEDR+VK F   +S        M  +     +      K    ++P+ E+VA N R+RS
Sbjct: 243 SLEDRIVKNFIRQQSRGPQIPVGMPLTETQLRLMGGANLKTMGKMMPSAEEVAENPRARS 302

Query: 309 AKLRAGMR 316
           A LR   R
Sbjct: 303 AVLRFAER 310


>gi|328471991|gb|EGF42868.1| 16S rRNA m(4)C1402 methyltranserfase [Vibrio parahaemolyticus
           10329]
          Length = 316

 Score =  199 bits (507), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 126/309 (40%), Positives = 178/309 (57%), Gaps = 20/309 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H+ VLL + I  L   P  + +D TFG GG+SR+   K+G N  + ++DRDP A++   E
Sbjct: 7   HISVLLNESIDGLAIKPDGIYIDGTFGRGGHSRTILSKLGPNGRLYSIDRDPQAIA---E 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +    +F++    FS +  Y  +      VDGV+ DLGVSS Q+D  +RGFSF K GP
Sbjct: 64  AGKIDDPRFTIIHGPFSGMAQYAEEYDLVGKVDGVLLDLGVSSPQLDDAERGFSFMKDGP 123

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---PFQTT 188
           LDMRM   SGI  S  + +A++ D+T ++   GE+K A RIA AIV+ R++    P   T
Sbjct: 124 LDMRMDPTSGIPVSQWLMEADLDDITWVIREFGEDKHARRIARAIVEYRENEENEPMVRT 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ LI +    S   + HPATR+FQA RI++N+E+EE+   L+ A + L   G L V+
Sbjct: 184 GQLAKLISEAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAARILAPEGRLSVI 243

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSITKKVV----VPTQEDVAFN 303
           SFHSLEDR+VK+F    S K   V H IP + A      S   K V     P++ ++  N
Sbjct: 244 SFHSLEDRMVKRFIRKES-KGPEVPHGIPLTEAQIKELGSANMKTVGKAIKPSKHEIDMN 302

Query: 304 RRSRSAKLR 312
            RSRS+ LR
Sbjct: 303 PRSRSSVLR 311


>gi|307330443|ref|ZP_07609586.1| S-adenosyl-methyltransferase MraW [Streptomyces violaceusniger Tu
           4113]
 gi|306883868|gb|EFN14911.1| S-adenosyl-methyltransferase MraW [Streptomyces violaceusniger Tu
           4113]
          Length = 310

 Score =  199 bits (507), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 117/307 (38%), Positives = 180/307 (58%), Gaps = 12/307 (3%)

Query: 24  LLEKVIALLNPA---PGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQETM 78
           +L++ + +L PA   PG V++D T G GG+S +  +    + +IALDRDP A+    E +
Sbjct: 1   MLQRCLDMLAPALAQPGAVVVDCTLGLGGHSEALLRDFPEARLIALDRDPSALRLAGERL 60

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
             Y ++ +L  A + +L + +   GV    G++FDLGVSSMQ+D  +RGF++ +  PLDM
Sbjct: 61  APYGDRATLVHAVYDELPEVLDRLGVPRVQGILFDLGVSSMQLDEAERGFAYAQDAPLDM 120

Query: 136 RMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM   +G+SA++V+N     +L RIL   GEEK A +I  A+V+ R   PF  +  L  L
Sbjct: 121 RMDQTTGVSAAEVLNTYPPGELVRILRAYGEEKFAKKIVDAVVRERAKEPFTNSARLVEL 180

Query: 195 IQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           I+  +   +K    +PA R+FQALRI VN E+  L + + +A   L  GG + V+S+HSL
Sbjct: 181 IRAALPQAAKRTGGNPAKRTFQALRIEVNGELAVLERAIPAAVGTLAVGGRIAVLSYHSL 240

Query: 254 EDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           EDRLVK+ FA+ +         +IP    P   + +T+   +PT+E++A NRR+  A+ R
Sbjct: 241 EDRLVKQVFAAGARNTAPPGLPVIPEQYQPR-LKLLTRGAELPTEEEIAENRRAAPARFR 299

Query: 313 AGMRTVE 319
              R  E
Sbjct: 300 GAERIRE 306


>gi|251788242|ref|YP_003002963.1| S-adenosyl-methyltransferase MraW [Dickeya zeae Ech1591]
 gi|263446384|sp|C6CJW6|RSMH_DICZE RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|247536863|gb|ACT05484.1| S-adenosyl-methyltransferase MraW [Dickeya zeae Ech1591]
          Length = 313

 Score =  199 bits (507), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 127/311 (40%), Positives = 182/311 (58%), Gaps = 21/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76
           H  VLL++ +  L+     + +D TFG GG+SR   S       ++A+DRDP AV     
Sbjct: 7   HTTVLLDEAVNGLSIRSNGIYIDGTFGRGGHSRLILSHLGPEGRLLAIDRDPQAVEVAN- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           T+ D +  FS+    FS+L +YV  +G    +DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 66  TIDDAR--FSIIHGPFSELAEYVEARGLTGKIDGILLDLGVSSPQLDDPERGFSFMRDGP 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G SA+D + +A   D+  +L   GEE+ A RIA AIV+R +  P   T+ L
Sbjct: 124 LDMRMDPTRGQSAADWLMKAEADDIAWVLKTFGEERFAKRIARAIVERNRIDPLTRTKAL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI       +  + HPATRSFQA+RI++N+E+EE+ + L  A   L  GG L V+SFH
Sbjct: 184 AELIAAASPIREKYK-HPATRSFQAIRIYINSELEEIERALDGALTVLAPGGRLSVISFH 242

Query: 252 SLEDRLVKKFFA--SRSGKVMA----VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           SLEDR+VK+F    SR  +V A        + S   P   +S+ K  ++P  ++VA N R
Sbjct: 243 SLEDRIVKRFIRQHSRGPQVPAGLPLTEAQLRSQGGP-TLKSVGK--MMPPDDEVADNPR 299

Query: 306 SRSAKLRAGMR 316
           +RS+ LR   R
Sbjct: 300 ARSSVLRFAER 310


>gi|116750882|ref|YP_847569.1| S-adenosyl-methyltransferase MraW [Syntrophobacter fumaroxidans
           MPOB]
 gi|171460803|sp|A0LNY2|RSMH_SYNFM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|116699946|gb|ABK19134.1| S-adenosyl-methyltransferase MraW [Syntrophobacter fumaroxidans
           MPOB]
          Length = 319

 Score =  199 bits (507), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 129/306 (42%), Positives = 182/306 (59%), Gaps = 13/306 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
           +H+PV+LE+ + LL    G V +D T G GGYS +  +  +    ++ +D D  A+    
Sbjct: 8   EHIPVMLEQALELLACRRGGVYVDGTVGGGGYSEAILRASAPDGILLGVDWDAEAIGRAA 67

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +  Y  +  L +A F++L + +P  G   VDG+V DLGVS+ QID   RGFSF K GP
Sbjct: 68  GRLSAYGRRAILTKAGFAELPEVLPRHGFAQVDGIVLDLGVSAFQIDDAARGFSFTKDGP 127

Query: 133 LDMRMSCSGI--SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           LDMRM   G+  +A+D+VN    KDL  ++  LGEE+ + RIA A+V+RR+  PFQ T +
Sbjct: 128 LDMRMD-PGLPQTAADMVNTLPEKDLADLIFRLGEERWSRRIARAVVERRRERPFQRTLE 186

Query: 191 LSSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+  +  TV  ++++R IHPATR+F ALR+ VN E+E L + L  A   LK GG L VVS
Sbjct: 187 LADTVAATVPATRDSRRIHPATRTFLALRLAVNQELESLERFLSGALDLLKTGGRLCVVS 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           FHSLEDR+VK  F   +      R  +       P V + +T+K V P + +   N RSR
Sbjct: 247 FHSLEDRMVKGQFKEWAKSCRCPREAVLCRCEGRPLV-RLLTRKAVRPDEREKERNPRSR 305

Query: 308 SAKLRA 313
           SA+LRA
Sbjct: 306 SARLRA 311


>gi|149377270|ref|ZP_01895017.1| S-adenosyl-methyltransferase MraW [Marinobacter algicola DG893]
 gi|149358458|gb|EDM46933.1| S-adenosyl-methyltransferase MraW [Marinobacter algicola DG893]
          Length = 326

 Score =  199 bits (507), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 123/309 (39%), Positives = 181/309 (58%), Gaps = 11/309 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQE 76
           H  VLL+  + LL   P  V +D TFG GG+SR        G  ++ +D+DP A+   ++
Sbjct: 15  HRSVLLDSAVDLLVNDPDGVYVDGTFGRGGHSRLILGRLGQGGKLLGIDKDPDAIQVARD 74

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +     +F  F  +F++L      +G   V+GV+ DLGVSS Q+D   RGFSF + GPL
Sbjct: 75  -LSASDARFQPFHGSFAELGAAAEAQGWMKVNGVLLDLGVSSPQLDDAARGFSFMRDGPL 133

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM      SA+  + +A+ KD+  ++   GEEK + RIA  +V+RR+ AP +TT+ L+
Sbjct: 134 DMRMDPGQAPSAAQWLAEADEKDIANVIWRYGEEKFSRRIARLVVERRKEAPLETTRQLA 193

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           SL+ + V   K    HPATR+FQA+RIF+N E+E+L  GL +A + L  GG L+V+SFHS
Sbjct: 194 SLVSEAVP-KKEKHKHPATRTFQAIRIFINRELEDLELGLNAAVEKLMPGGRLVVISFHS 252

Query: 253 LEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDRLVK+F    + G  +     + +    + F+ I K     T+E V+ N R+RSA +
Sbjct: 253 LEDRLVKRFMRDLARGPRLPKGVPVTAEQEASAFRLIGKANKADTEE-VSDNVRARSAVM 311

Query: 312 RAGMRTVER 320
           R   R  E+
Sbjct: 312 RVLERIPEQ 320


>gi|296166032|ref|ZP_06848481.1| S-adenosyl-methyltransferase MraW [Mycobacterium parascrofulaceum
           ATCC BAA-614]
 gi|295898597|gb|EFG78154.1| S-adenosyl-methyltransferase MraW [Mycobacterium parascrofulaceum
           ATCC BAA-614]
          Length = 334

 Score =  199 bits (507), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 120/325 (36%), Positives = 182/325 (56%), Gaps = 18/325 (5%)

Query: 20  HVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPF 69
           HVPVLL + + LL PA         G V+LDAT GAGG++  F     G  +I LDRDP 
Sbjct: 10  HVPVLLGRCVELLTPALTRHDADGSGAVLLDATLGAGGHAERFLTDLPGLRLIGLDRDPN 69

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSSMQIDCGDR 123
           A+   +  +  + ++ +L    +  L   + + G      VDG++FDLGVSSMQ+D  +R
Sbjct: 70  ALEITRARLARFADRITLVHTRYDGLAAALAESGYGAIESVDGMLFDLGVSSMQLDRAER 129

Query: 124 GFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GF++ +  PLDMRM   S ++A+D++N  +   L  IL   GEE+ A RIA  +V+RR  
Sbjct: 130 GFAYAQDAPLDMRMDPESPLTAADILNTYDEAALADILHRYGEERFARRIAAQVVRRRAR 189

Query: 183 APFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
           APF +T DL +L+ + +   ++    HPA R+FQALRI VN+E+  L     +   AL  
Sbjct: 190 APFASTADLVALLYQAIPAPARRTGGHPAKRTFQALRIAVNDELNSLRAATPAGLDALAV 249

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           GG ++V+++ SLEDR+VK+ FA+       V   +    H   F+S+T        ++V 
Sbjct: 250 GGRMVVLAYQSLEDRIVKRLFAAAVASRTPVDLPVELPGHEPRFRSLTHGAERADADEVE 309

Query: 302 FNRRSRSAKLRAGMRTVERSIEDDS 326
            N RS + +LRA  R  + + + D+
Sbjct: 310 RNPRSAAVRLRAVQRVQQSTGKADA 334


>gi|327281892|ref|XP_003225679.1| PREDICTED: probable S-adenosyl-L-methionine-dependent
           methyltransferase METT5D1-like [Anolis carolinensis]
          Length = 395

 Score =  199 bits (507), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 129/317 (40%), Positives = 177/317 (55%), Gaps = 38/317 (11%)

Query: 38  KVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95
           + ILD TFGAGG++++  +  M   + ALDRDP A    Q     Y +Q       FSQL
Sbjct: 78  ECILDMTFGAGGHTKALLQKEMDIKLYALDRDPTAYELAQRLSDSYTQQIQPLLGQFSQL 137

Query: 96  QDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI----SASD 146
           +  +   GV     DGV+ D G SSMQ+D  +RGFS +K GPLDMRM         +A+D
Sbjct: 138 EALLTSAGVQPGNLDGVLLDAGCSSMQLDTPERGFSLRKDGPLDMRMDGDRYPDMPTAAD 197

Query: 147 VVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT-----VYF 201
           VVN  + + L  IL + GEE+ A +IA AIV+ R   P   TQ L+S++        +Y 
Sbjct: 198 VVNALDQQALASILRMYGEERHAKKIALAIVQARSVYPITRTQQLASIVAGAFPDVALYA 257

Query: 202 SKN---NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258
            K+      H AT++FQALRIFVNNE+ EL  GL++AEK LK GG  + +SFHSLEDR++
Sbjct: 258 RKDLLHRPTHVATKTFQALRIFVNNELHELYAGLQTAEKFLKPGGRFVALSFHSLEDRII 317

Query: 259 KKFFAS--RSGKV-MAVRHMIP---------------SNAHPAV-FQSITKKVVVPTQED 299
           K+F      S K  ++VR  I                SN +  + + +I KKV+ P  +D
Sbjct: 318 KRFLLGIDISEKFNLSVRQKIKQMGRDFSELEEEDEFSNGNVNLKWIAIQKKVLTPQAKD 377

Query: 300 VAFNRRSRSAKLRAGMR 316
           +  N R RSAKLR  ++
Sbjct: 378 LQDNPRGRSAKLRGAIK 394


>gi|157368998|ref|YP_001476987.1| S-adenosyl-methyltransferase MraW [Serratia proteamaculans 568]
 gi|262826478|sp|A8G9R9|RSMH_SERP5 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|157320762|gb|ABV39859.1| S-adenosyl-methyltransferase MraW [Serratia proteamaculans 568]
          Length = 313

 Score =  199 bits (507), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 129/311 (41%), Positives = 183/311 (58%), Gaps = 21/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMG--SNVIALDRDPFAVSCGQE 76
           H  VLL++ +  LN       +D TFG GG+SR    ++G    ++A+DRDP A++  + 
Sbjct: 7   HTTVLLDEAVNGLNIRSNGTYIDGTFGRGGHSRLILSQLGPEGRLLAIDRDPQAIAAAK- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           ++ D +  FS+    FS L  YV ++     +DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 66  SIEDPR--FSIVHGPFSDLSHYVRERELVGQIDGILLDLGVSSPQLDDAERGFSFMRDGP 123

Query: 133 LDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM S SG SAS+ + +A   D+  +L   GEE+ A RIA AIV+R Q  P   T+ L
Sbjct: 124 LDMRMDSSSGQSASEWLMKAEADDIAWVLKTFGEERFAKRIARAIVERNQVDPMTRTKQL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI     F   ++ HPATRSFQA+RI++N+E+EE+ + L  A + L   G L V+SFH
Sbjct: 184 ADLIANASPFRDKHK-HPATRSFQAIRIYINSELEEIERALDGALEVLAPQGRLSVISFH 242

Query: 252 SLEDRLVKKFFA--SRSGKVMAVRHMIP-SNAHPAVFQSITKKVV---VPTQEDVAFNRR 305
           SLEDR+VK+F    SR  +V A    IP + A        T K +   +P   +VA N R
Sbjct: 243 SLEDRIVKRFMRHHSRGAQVPA---GIPLTEAQLRSMGGRTLKALGKMMPGDAEVAENPR 299

Query: 306 SRSAKLRAGMR 316
           +RS+ LR   R
Sbjct: 300 ARSSVLRIAER 310


>gi|156935398|ref|YP_001439314.1| S-adenosyl-methyltransferase MraW [Cronobacter sakazakii ATCC
           BAA-894]
 gi|263447014|sp|A7MIE1|RSMH_ENTS8 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|156533652|gb|ABU78478.1| hypothetical protein ESA_03256 [Cronobacter sakazakii ATCC BAA-894]
          Length = 313

 Score =  199 bits (507), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 123/309 (39%), Positives = 179/309 (57%), Gaps = 15/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN  P  + +D TFG GG+SR    ++G    ++A+DRDP        
Sbjct: 7   HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEQGRLLAIDRDP---QAIAA 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  +FS+    FS L DYV ++     +DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 64  AAAIDDPRFSIIHGPFSALGDYVRERELQGKIDGILLDLGVSSPQLDDPERGFSFMRDGP 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   T++L
Sbjct: 124 LDMRMDPTRGQSAAEWLRNAEEADIAWVLKTFGEERFAKRIARAIVERNRELPMTRTKEL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+ A + L  GG L V+SFH
Sbjct: 184 AEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKGAVEVLAPGGRLSVISFH 242

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITK-KVVVPTQEDVAFNRRSRS 308
           SLEDRLVK+F    SR  +V A   M  +       + +     ++P + +VA N R+RS
Sbjct: 243 SLEDRLVKRFMREQSRGPQVPAGLPMTEAQLQKLGGRELRALGKLMPGEAEVAENPRARS 302

Query: 309 AKLRAGMRT 317
           + LR   RT
Sbjct: 303 SVLRVAERT 311


>gi|148269200|ref|YP_001243660.1| S-adenosyl-methyltransferase MraW [Thermotoga petrophila RKU-1]
 gi|281411498|ref|YP_003345577.1| S-adenosyl-methyltransferase MraW [Thermotoga naphthophila RKU-10]
 gi|262825857|sp|A5IIR1|RSMH_THEP1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|147734744|gb|ABQ46084.1| S-adenosyl-methyltransferase MraW [Thermotoga petrophila RKU-1]
 gi|281372601|gb|ADA66163.1| S-adenosyl-methyltransferase MraW [Thermotoga naphthophila RKU-10]
          Length = 299

 Score =  199 bits (507), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 115/306 (37%), Positives = 184/306 (60%), Gaps = 29/306 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77
           H+PV++ +VI  L P   K+ILD T G GG+S++  +   G  +I +D D   +   +E 
Sbjct: 8   HIPVMVREVIEFLKPEDEKIILDCTVGEGGHSKAILEHCPGCRIIGIDVDSEVLRIAEEK 67

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++++ ++ SLF+ ++ +    +   GV   DG++ DLGVS+ Q+   +RGF+F++  PLD
Sbjct: 68  LKEFSDRASLFKISYREADFLLKTLGVEKVDGILMDLGVSTYQLKGENRGFTFEREEPLD 127

Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQ-ASRIAHAIVKRRQSAPFQTTQDLS 192
           MRM   S ++A  V+N+   ++L RI+   GEEK+ A RIA  IV+ R   P  TT DL 
Sbjct: 128 MRMDLESEVTAQKVLNELPEEELARIIFEYGEEKKFARRIARKIVENR---PLNTTLDLV 184

Query: 193 SLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +++ +  Y  +  + H AT++FQA+RI+VN E+E L + LR AE  L  GG ++V+SF
Sbjct: 185 KAVREALPSYEIRRRKRHFATKTFQAIRIYVNRELENLKEFLRKAEDLLNPGGRIVVISF 244

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDR+VK+ F  R+ K + +               +T+K V P++E++  N R+RS +
Sbjct: 245 HSLEDRIVKETF--RNSKKLRI---------------LTEKPVRPSEEEIRENPRARSGR 287

Query: 311 LRAGMR 316
           LRA  R
Sbjct: 288 LRAAER 293


>gi|307179074|gb|EFN67546.1| Putative S-adenosyl-L-methionine-dependent methyltransferase
           CG14683 [Camponotus floridanus]
          Length = 427

 Score =  199 bits (507), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 121/329 (36%), Positives = 187/329 (56%), Gaps = 36/329 (10%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           ++PV+ ++V+  ++ +PGK  +D TFGAGG++  F +  S++   ALDRDP A    Q+ 
Sbjct: 101 YLPVMAQEVLTYMDLSPGKTYVDMTFGAGGHTTKFLEYLSDIKIFALDRDPVAYKYAQQL 160

Query: 78  MRDYKEQFSLFQATFSQL-----QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            + Y  +      TFS+L     Q  +    +DG +FD G SSMQI+  +RGFS  K+GP
Sbjct: 161 SQKYPGKVIPLLGTFSELPQLLKQYNIKRNSIDGFLFDFGCSSMQIEDANRGFSLLKNGP 220

Query: 133 LDMRMS--CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQTTQ 189
           LDMRM+      +A+DV+++A  +DL RI+ + G+EK+A +IA AI++ R      +TTQ
Sbjct: 221 LDMRMNGCLKQPTAADVLDRATEEDLARIIKVYGQEKRAKKIARAIIEARYMFRKLETTQ 280

Query: 190 DLSSLIQ-------KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           +L  L++       +T    K +  H A ++FQALRIFVNNE+ E+  G+  A   LK  
Sbjct: 281 ELIQLVESVLDDEIRTDNLDKYS--HSAVKTFQALRIFVNNELNEINYGILLANIYLKLS 338

Query: 243 GLLIVVSFHSLEDRLVKKFFA---------------SRSGKVMAVRHMIPSNAHPAVFQS 287
           G LI +SF+SLED ++K+  +               +  GKV            P  ++ 
Sbjct: 339 GRLITISFNSLEDTIIKRHLSGNITDNVANTVALKYANYGKVFNTNEFQILTEKP--WKM 396

Query: 288 ITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           + K V+ PT E++  N +S+SAKLRA M+
Sbjct: 397 MHKHVLTPTSEEIEINPKSQSAKLRAIMK 425


>gi|258593046|emb|CBE69357.1| S-adenosyl-dependent methyl transferase [NC10 bacterium 'Dutch
           sediment']
          Length = 301

 Score =  199 bits (507), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 119/308 (38%), Positives = 176/308 (57%), Gaps = 21/308 (6%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCG 74
           G H+PVLLE+ +A L P PG   LDAT G GG++ +     +    +  +DRD  A++  
Sbjct: 5   GRHLPVLLEETVAFLQPRPGGCYLDATVGLGGHAETLLIESAPTGCLCGIDRDVEALALA 64

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +  +  +  +  L    F+ L     +   +  DG++FDLG SS Q+D   RGFSF + G
Sbjct: 65  KGRLGQFGSRVELRYGDFASLGAIAAENEWRPFDGILFDLGFSSFQMDNASRGFSFMRDG 124

Query: 132 PLDMRMSCSGI--SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            LDMRM   G   SA++++ +   ++L R+L   GEE+ A RIA  IV+ R++ P  +T 
Sbjct: 125 LLDMRMDRQGCDKSAAELLARIPERELARLLQDYGEERWAKRIAARIVEARRTQPLTSTA 184

Query: 190 DLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L+ L+   V   +   RIH ATR+FQALRI VN+E+  L +GL++A + L  GG + V+
Sbjct: 185 QLARLVAAAVPRRAWPRRIHVATRTFQALRIAVNDELARLRRGLQNAVELLAVGGRICVI 244

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDR+VK+ F               + + P   + +TK+ VVPT+ +   N R+RS
Sbjct: 245 SFHSLEDRIVKEVFRGW------------ARSEPPRVRLLTKRPVVPTERESEINPRARS 292

Query: 309 AKLRAGMR 316
           AKLRA  R
Sbjct: 293 AKLRAAER 300


>gi|147678204|ref|YP_001212419.1| S-adenosyl-methyltransferase MraW [Pelotomaculum thermopropionicum
           SI]
 gi|262824781|sp|A5D113|RSMH_PELTS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|146274301|dbj|BAF60050.1| predicted S-adenosylmethionine-dependent methyltransferase
           [Pelotomaculum thermopropionicum SI]
          Length = 311

 Score =  199 bits (506), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 119/307 (38%), Positives = 179/307 (58%), Gaps = 19/307 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQE 76
           H PV+L++V+  LN  PG V +D T G  G+  +  K       +I +DRDP A++  + 
Sbjct: 5   HRPVMLDEVLEGLNLKPGGVYVDCTVGGAGHGEAILKRTGAEGRLIGIDRDPEALAAAER 64

Query: 77  TMRDYKEQFSLFQATF---SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  Y ++  L +A F    ++ + +   GVDG++FDLGVSS Q+D   RGFS+++   L
Sbjct: 65  RLVPYGKRVDLVRANFEDIGKVLERLGQTGVDGILFDLGVSSYQLDNPARGFSYKRDSLL 124

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM    G SA ++VN    ++L RI+   GEE+ A RIA  IV+ R+ +P +TT  L+
Sbjct: 125 DMRMDPERGPSARELVNTLTAEELARIIKDYGEERWAFRIAAFIVEERKRSPIETTGRLA 184

Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+K +   ++    HPA R+FQALRI VN E+E L   LRSA + L+ GG + V+++H
Sbjct: 185 EIIKKAIPAGARREGPHPARRTFQALRIAVNRELEVLGGALRSAVRVLRPGGRICVITYH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV------FQSITKKVVVPTQEDVAFNRR 305
           SLEDR+VK+ F     + +A     P      V       + +T + VVP+  +V  N R
Sbjct: 245 SLEDRIVKETF-----RRLASPCTCPKEFPACVCGGKKEIKIVTARPVVPSAGEVEENPR 299

Query: 306 SRSAKLR 312
           +RSAKLR
Sbjct: 300 ARSAKLR 306


>gi|78484904|ref|YP_390829.1| methyltransferase [Thiomicrospira crunogena XCL-2]
 gi|123555855|sp|Q31I68|RSMH_THICR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|78363190|gb|ABB41155.1| S-adenosyl-methyltransferase MraW [Thiomicrospira crunogena XCL-2]
          Length = 314

 Score =  199 bits (506), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 123/310 (39%), Positives = 183/310 (59%), Gaps = 19/310 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQ 75
           +H PV+L + +A LN  P  + +D TFG GG+SR+   ++G    ++A+D+DP A+    
Sbjct: 11  NHYPVMLSESVAGLNIDPNGIYIDCTFGRGGHSRAILNELGEQGRLLAIDQDPEAIRYAD 70

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
               D +  F +   +F  LQ Y   +     +DG++ DLGVSS Q+D  +RGFSF +SG
Sbjct: 71  ANFDDPR--FEIQHGSFEALQQYCEARDWVGKIDGILIDLGVSSPQLDEAERGFSFMRSG 128

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+  +G+SA + + Q + K L ++L   GEE+ + RIA  I +  Q    QTT D
Sbjct: 129 PLDMRMNPQTGLSAKEWLTQVDEKTLAQVLKQYGEERFSGRIARHIKEAVQEQKLQTTLD 188

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ ++ K    ++ ++ HPATR+FQA+RI VN E++ L   L  +   LK GG L V+SF
Sbjct: 189 LAQVVTKASPKTEKHK-HPATRTFQAIRIAVNRELDVLKTVLEVSVAVLKTGGRLSVISF 247

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSITKKV---VVPTQEDVAFNRRS 306
           HSLEDR+VK+F   +S     ++ + P S     V + + KKV   V P++E+   N RS
Sbjct: 248 HSLEDRIVKQFIRDQS----RIKDLFPDSPIQLEVVEPVIKKVGKPVFPSKEECQENPRS 303

Query: 307 RSAKLRAGMR 316
           RSA LR   R
Sbjct: 304 RSAVLRIAER 313


>gi|327479635|gb|AEA82945.1| S-adenosyl-methyltransferase MraW [Pseudomonas stutzeri DSM 4166]
          Length = 315

 Score =  199 bits (506), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 122/305 (40%), Positives = 184/305 (60%), Gaps = 16/305 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76
           H+ VLL++ +A L+       LD TFG GG+SR   + +G N  ++  D+DP A++ GQ 
Sbjct: 9   HITVLLDEAVAALSVRADGRYLDGTFGRGGHSRLLLQQLGPNGQLLGFDKDPLAIATGQ- 67

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            +     +F + Q +F++L D V  +G    V G++ DLGVSS Q+D   RGFSF   GP
Sbjct: 68  ALAAEDGRFVVVQRSFAELGDEVAQRGWMGAVSGILLDLGVSSPQLDDPIRGFSFLNDGP 127

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G+SAS+ +  A+  ++ R+    GEE+ A R+A A+V+RR  APF+ T DL
Sbjct: 128 LDMRMDPSRGVSASEWIASADEDEIARVFKDYGEERFAKRMARAVVQRRAEAPFERTADL 187

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++       +  + +PATR+FQ LRI +NNE+ +L  GL +A +AL+ GG L+V+SFH
Sbjct: 188 AKVLTDANPAWEKGK-NPATRAFQGLRIHINNELGDLECGLDAALEALEVGGRLVVISFH 246

Query: 252 SLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVP---TQEDVAFNRRSR 307
           SLEDR+VK+F    + G+   +   +P    P  F+   K +  P   ++ +V  N RSR
Sbjct: 247 SLEDRIVKQFMRRHAKGEADKLPRDLP--IIPKAFEPRLKLIGKPQYASEAEVKANPRSR 304

Query: 308 SAKLR 312
           SA +R
Sbjct: 305 SAVMR 309


>gi|22127508|ref|NP_670931.1| S-adenosyl-methyltransferase MraW [Yersinia pestis KIM 10]
 gi|45443369|ref|NP_994908.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51595030|ref|YP_069221.1| S-adenosyl-methyltransferase MraW [Yersinia pseudotuberculosis IP
           32953]
 gi|108809545|ref|YP_653461.1| S-adenosyl-methyltransferase MraW [Yersinia pestis Antiqua]
 gi|108810578|ref|YP_646345.1| S-adenosyl-methyltransferase MraW [Yersinia pestis Nepal516]
 gi|150260418|ref|ZP_01917146.1| S-adenosyl-methyltransferase [Yersinia pestis CA88-4125]
 gi|153947578|ref|YP_001402352.1| S-adenosyl-methyltransferase MraW [Yersinia pseudotuberculosis IP
           31758]
 gi|162419065|ref|YP_001607303.1| S-adenosyl-methyltransferase MraW [Yersinia pestis Angola]
 gi|165928201|ref|ZP_02224033.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165937803|ref|ZP_02226364.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166008805|ref|ZP_02229703.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166212069|ref|ZP_02238104.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167401265|ref|ZP_02306765.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167422048|ref|ZP_02313801.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167426442|ref|ZP_02318195.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167470126|ref|ZP_02334830.1| S-adenosyl-methyltransferase MraW [Yersinia pestis FV-1]
 gi|170025741|ref|YP_001722246.1| S-adenosyl-methyltransferase MraW [Yersinia pseudotuberculosis
           YPIII]
 gi|186894036|ref|YP_001871148.1| S-adenosyl-methyltransferase MraW [Yersinia pseudotuberculosis
           PB1/+]
 gi|218927743|ref|YP_002345618.1| S-adenosyl-methyltransferase MraW [Yersinia pestis CO92]
 gi|229837062|ref|ZP_04457227.1| S-adenosyl-dependent methyltransferase protein with activity on
           membrane-located substrates [Yersinia pestis Pestoides
           A]
 gi|229840435|ref|ZP_04460594.1| S-adenosyl-dependent methyltransferase protein with activity on
           membrane-located substrates [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229843023|ref|ZP_04463173.1| S-adenosyl-dependent methyltransferase protein with activity on
           membrane-located substrates [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229900770|ref|ZP_04515894.1| S-adenosyl-dependent methyltransferase protein with activity on
           membrane-located substrates [Yersinia pestis Nepal516]
 gi|270487860|ref|ZP_06204934.1| S-adenosyl-methyltransferase MraW [Yersinia pestis KIM D27]
 gi|294502635|ref|YP_003566697.1| S-adenosyl-methyltransferase [Yersinia pestis Z176003]
 gi|20139012|sp|Q8ZIF7|RSMH_YERPE RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|85542907|sp|Q66EL3|RSMH_YERPS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|122979342|sp|Q1C206|RSMH_YERPA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|123246757|sp|Q1CMN5|RSMH_YERPN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263504671|sp|A7FM74|RSMH_YERP3 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263504678|sp|B2K4D8|RSMH_YERPB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263504680|sp|A9R132|RSMH_YERPG RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263504693|sp|B1JK89|RSMH_YERPY RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|21960606|gb|AAM87182.1|AE013965_9 putative apolipoprotein [Yersinia pestis KIM 10]
 gi|45438238|gb|AAS63785.1| Predicted S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51588312|emb|CAH19920.1| S-adenosyl-dependent methyl transferase [Yersinia
           pseudotuberculosis IP 32953]
 gi|108774226|gb|ABG16745.1| hypothetical protein YPN_0413 [Yersinia pestis Nepal516]
 gi|108781458|gb|ABG15516.1| hypothetical protein YPA_3554 [Yersinia pestis Antiqua]
 gi|115346354|emb|CAL19226.1| conserved hypothetical protein [Yersinia pestis CO92]
 gi|149289826|gb|EDM39903.1| S-adenosyl-methyltransferase [Yersinia pestis CA88-4125]
 gi|152959073|gb|ABS46534.1| S-adenosyl-methyltransferase MraW [Yersinia pseudotuberculosis IP
           31758]
 gi|162351880|gb|ABX85828.1| S-adenosyl-methyltransferase MraW [Yersinia pestis Angola]
 gi|165914215|gb|EDR32831.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165919812|gb|EDR37113.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165992144|gb|EDR44445.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166206815|gb|EDR51295.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166960185|gb|EDR56206.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167049290|gb|EDR60698.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167054540|gb|EDR64348.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169752275|gb|ACA69793.1| S-adenosyl-methyltransferase MraW [Yersinia pseudotuberculosis
           YPIII]
 gi|186697062|gb|ACC87691.1| S-adenosyl-methyltransferase MraW [Yersinia pseudotuberculosis
           PB1/+]
 gi|229682109|gb|EEO78201.1| S-adenosyl-dependent methyltransferase protein with activity on
           membrane-located substrates [Yersinia pestis Nepal516]
 gi|229689899|gb|EEO81958.1| S-adenosyl-dependent methyltransferase protein with activity on
           membrane-located substrates [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229696801|gb|EEO86848.1| S-adenosyl-dependent methyltransferase protein with activity on
           membrane-located substrates [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229706005|gb|EEO92014.1| S-adenosyl-dependent methyltransferase protein with activity on
           membrane-located substrates [Yersinia pestis Pestoides
           A]
 gi|262360665|gb|ACY57386.1| S-adenosyl-methyltransferase [Yersinia pestis D106004]
 gi|262364611|gb|ACY61168.1| S-adenosyl-methyltransferase [Yersinia pestis D182038]
 gi|270336364|gb|EFA47141.1| S-adenosyl-methyltransferase MraW [Yersinia pestis KIM D27]
 gi|294353094|gb|ADE63435.1| S-adenosyl-methyltransferase [Yersinia pestis Z176003]
 gi|320016913|gb|ADW00485.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 320

 Score =  199 bits (506), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 123/313 (39%), Positives = 182/313 (58%), Gaps = 19/313 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMG--SNVIALDRDPFAVSCGQE 76
           H  VLL++ +  LN     + +D TFG GG+SR    ++G    +IA+DRDP A+   ++
Sbjct: 14  HTSVLLDEAVKGLNIRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDRDPEAIEAAKQ 73

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  +FS+    FS L  YV D      +DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 74  IT---DPRFSIVHGPFSDLAHYVRDLDLVGRIDGILLDLGVSSPQLDDAERGFSFMRDGP 130

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G+SA++ + +A+  D+  +L   GEE+ A R+A AIV+R  + P   T++L
Sbjct: 131 LDMRMDPSRGLSAAEWLMKASADDIAWVLKTFGEERFAKRLAKAIVERNLTQPMTRTKEL 190

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI     F   ++ HPATRSFQA+RI++N+E+EE+ + L  A + L   G L V+SFH
Sbjct: 191 ADLIANASPFRDKHK-HPATRSFQAIRIYINSELEEIERALDGAHEVLAPEGRLSVISFH 249

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306
           SLEDR+VK F    SR  +V A   +  +          +S+ K  ++P   ++A N R+
Sbjct: 250 SLEDRIVKNFIRHHSRGPQVPAGLPLTEAQLRSMGGRTLKSVGK--MMPGDAEIAENPRA 307

Query: 307 RSAKLRAGMRTVE 319
           RS+ LR   R  E
Sbjct: 308 RSSVLRFAERIGE 320


>gi|221632091|ref|YP_002521312.1| S-adenosyl-methyltransferase MraW [Thermomicrobium roseum DSM 5159]
 gi|262825878|sp|B9L274|RSMH_THERP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|221156426|gb|ACM05553.1| S-adenosyl-methyltransferase MraW [Thermomicrobium roseum DSM 5159]
          Length = 326

 Score =  199 bits (506), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 126/305 (41%), Positives = 172/305 (56%), Gaps = 9/305 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H PVLL   +  L P  G   +DATFG GG+SR+  +  +    V+A+D DP AV+  + 
Sbjct: 17  HEPVLLSAALTFLAPRDGGRYIDATFGGGGHSRAILEASAPSGQVLAIDADPAAVARARA 76

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
               Y  +       F  L       G   VDG++FDLG+SS Q+    RGFSFQ +GPL
Sbjct: 77  LAERYPGRLLPCHGNFRDLARLAQSYGFVPVDGILFDLGLSSDQLADPARGFSFQLAGPL 136

Query: 134 DMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMR    SG  A+ +VN  + ++L  +    GEE +A  IA  IV  R   P +TT  L+
Sbjct: 137 DMRFDPTSGEPAAVIVNTWSAEELAELFWQYGEEPRAWAIAQTIVAERARQPIETTTQLA 196

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +L+ + V  S+  RIHPATR FQALRI VN E+E LA GL  A + L+ GG L+V++FHS
Sbjct: 197 ALVAR-VAGSRRERIHPATRVFQALRIAVNQELEALAAGLAQAVELLRPGGRLVVIAFHS 255

Query: 253 LEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDRLVK+FF   +   +      +    H    + +T + V P+ E++  N RSRSA+L
Sbjct: 256 LEDRLVKQFFRREAAACLCPPGTPVCICGHRPRLRLLTPRPVRPSAEEITRNPRSRSARL 315

Query: 312 RAGMR 316
           RA  R
Sbjct: 316 RAAER 320


>gi|218289891|ref|ZP_03494081.1| S-adenosyl-methyltransferase MraW [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218240031|gb|EED07217.1| S-adenosyl-methyltransferase MraW [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 316

 Score =  199 bits (506), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 117/303 (38%), Positives = 186/303 (61%), Gaps = 9/303 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VLLE+ +  L P PG V +DAT G GG++    +    G  VIA D+D  A++  + 
Sbjct: 5   HETVLLEEAVEALRPRPGGVYVDATLGGGGHTARLLERSAPGGAVIAFDQDETAIAHAEP 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             R Y  + +L +A F+++++ +   GV   DGV+FDLGVSS Q D  +RGFS+   GPL
Sbjct: 65  LKRQYPGRLTLVKANFAEMEERLRALGVTAVDGVLFDLGVSSPQFDLPERGFSYWHEGPL 124

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     ++A ++VN+ + ++L RI+   GEE+ A+ IA AI + R   P +TT +L+
Sbjct: 125 DMRMDRHQPLTAREIVNEWDEQELARIIREYGEERFATAIARAIARARSKKPIETTTELA 184

Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +++  +   ++ +  HPA R+FQA+RI VN+E+  L +G+ +A +AL+ GG L V++FH
Sbjct: 185 EIVKSAIPAAARRSGPHPARRTFQAIRIAVNDELGALERGMEAAFRALRPGGRLSVITFH 244

Query: 252 SLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR VK+ F + + G +      +       + + +++K V P+ E++  N R+RSAK
Sbjct: 245 SLEDRAVKRLFQTWAQGCICPPEFPVCQCGRKPLGRMVSRKPVTPSSEELERNPRARSAK 304

Query: 311 LRA 313
           LRA
Sbjct: 305 LRA 307


>gi|322436313|ref|YP_004218525.1| S-adenosyl-methyltransferase MraW [Acidobacterium sp. MP5ACTX9]
 gi|321164040|gb|ADW69745.1| S-adenosyl-methyltransferase MraW [Acidobacterium sp. MP5ACTX9]
          Length = 297

 Score =  199 bits (506), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 131/305 (42%), Positives = 179/305 (58%), Gaps = 28/305 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76
           HVPVLLE+ +  LN  PG V +DAT G GG+S +  K +G    +IA DRDP A+S  Q 
Sbjct: 6   HVPVLLEEALEYLNVRPGGVYVDATLGLGGHSSAIAKKLGGQGKLIAFDRDPDAMSKAQA 65

Query: 77  TMRDYKEQFSLFQAT-------FSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
            +   KE+      T       FS+  D +    +DG++ D GVSSMQ+D   RGFSF+ 
Sbjct: 66  RLEALKEELGAEMPTVQFEPRAFSEAGDAIAKGSLDGLLADFGVSSMQLDEAHRGFSFRS 125

Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM   SG +A  VVN+ +  +L  ++   GEE+++ RIA AIV+ R   P  TT
Sbjct: 126 DGPLDMRMDTRSGETAGQVVNEEDENELADLIYEFGEERRSRRIARAIVRAR---PISTT 182

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ +I       K ++IHPATR+FQA+R+ VN+E+ E+   L+SA   LK GG L+++
Sbjct: 183 AELARIISAAAPPMKGDKIHPATRTFQAIRMRVNDELGEIQSLLKSAGSLLKPGGRLVMI 242

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDRLVK  F          R +         F  +TKK V+  +++   N RSRS
Sbjct: 243 SFHSLEDRLVKDAF----------REL----GRDKKFTVLTKKPVIAAEQESLRNPRSRS 288

Query: 309 AKLRA 313
           AKLRA
Sbjct: 289 AKLRA 293


>gi|121535927|ref|ZP_01667723.1| S-adenosyl-methyltransferase MraW [Thermosinus carboxydivorans
           Nor1]
 gi|121305498|gb|EAX46444.1| S-adenosyl-methyltransferase MraW [Thermosinus carboxydivorans
           Nor1]
          Length = 313

 Score =  199 bits (506), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 121/301 (40%), Positives = 169/301 (56%), Gaps = 8/301 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H  VLLE+ +A L   P  + +D T G GG+S       S    +I +D+DP A++ GQ 
Sbjct: 8   HKTVLLEESVAALVTNPAGIYVDCTLGGGGHSALIASRLSPEGWLIGIDQDPAAIAAGQA 67

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +     +  L +  FS L   +   G   VDGV+FDLGVSS Q+D   RGFS+ +  PL
Sbjct: 68  RLAGASCRIDLVRDNFSNLSRILTTLGIESVDGVLFDLGVSSHQLDVAQRGFSYMQDAPL 127

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  S  ISA DVVN  +  DLTRI+   GEE+ A RIA  IV+ R +AP  TT  L+
Sbjct: 128 DMRMDPSAPISAYDVVNTYSEDDLTRIIRDYGEERWARRIAQFIVQARMTAPICTTGQLT 187

Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I++ +   ++ +  HPA R+FQA+RI VNNE+  L     +A + LK GG + +++FH
Sbjct: 188 DIIKRAIPAAARRDGPHPAKRTFQAIRIEVNNELSILQDAFITAVQFLKCGGRICIITFH 247

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+ K    S +   +    +     H      I  K + PT E++  N R+RSAKL
Sbjct: 248 SLEDRIAKHTLQSLAKGCVCPPQLPICVCHNKPKLKILGKPITPTAEELDDNHRARSAKL 307

Query: 312 R 312
           R
Sbjct: 308 R 308


>gi|293392868|ref|ZP_06637186.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Serratia
           odorifera DSM 4582]
 gi|291424727|gb|EFE97938.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Serratia
           odorifera DSM 4582]
          Length = 313

 Score =  199 bits (506), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 123/315 (39%), Positives = 190/315 (60%), Gaps = 29/315 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMG--SNVIALDRDPFAVSCGQE 76
           H  VLL++ +  LN     + +D TFG GG+SR    ++G    ++A+DRDP A++  + 
Sbjct: 7   HTTVLLDEAVNGLNIRSNGIYIDGTFGRGGHSRLILSQLGPEGRLLAIDRDPQAIAAAK- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           ++ D +  F++    FS L  YV ++     +DGV+ DLGVSS Q+D  +RGFSF + GP
Sbjct: 66  SIEDPR--FTIVHGPFSDLSHYVRERELVGKIDGVLLDLGVSSPQLDDAERGFSFMRDGP 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G SA++ + +A   D+  +L   GEE+ A RIA AIV+R ++ P   T++L
Sbjct: 124 LDMRMDPTRGQSAAEWLLKAEADDIAWVLKTFGEERFAKRIARAIVERNKTEPMTRTKEL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI     F + ++ HPATRSFQA+RI++N+E+EE+ + L  A + L   G L ++SFH
Sbjct: 184 ADLIADASPFREKHK-HPATRSFQAIRIYINSELEEIERALDGALEVLAPQGRLSIISFH 242

Query: 252 SLEDRLVKKFFA--SRSGKVMA--------VRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           SLEDR+VK+F    SR  +V A        +R +   N      +S+ K  ++P++ +VA
Sbjct: 243 SLEDRIVKRFMRHHSRGAQVPAGLPLTEAQLRELGGRN-----LKSLGK--MMPSEAEVA 295

Query: 302 FNRRSRSAKLRAGMR 316
            N R+RS+ LR   R
Sbjct: 296 ENPRARSSVLRIAER 310


>gi|209696060|ref|YP_002263990.1| S-adenosyl-methyltransferase MraW [Aliivibrio salmonicida LFI1238]
 gi|263446678|sp|B6ELI3|RSMH_ALISL RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|208010013|emb|CAQ80336.1| S-adenosyl-methyltransferase MraW [Aliivibrio salmonicida LFI1238]
          Length = 316

 Score =  199 bits (506), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 129/313 (41%), Positives = 178/313 (56%), Gaps = 20/313 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           HV VLL + I  L   P  + +D TFG GG+SR    ++G N  + ++DRDP A++  + 
Sbjct: 7   HVSVLLHESIDGLAIKPDGIYIDGTFGRGGHSRQILSRLGENGRLYSIDRDPQAIAEAK- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           T+ D +  F++    FS L+ YV + G    +DGV+ DLGVSS Q+D  DRGFSF K GP
Sbjct: 66  TITDPR--FNIIHGPFSGLKGYVEELGLVGQIDGVLLDLGVSSPQLDDADRGFSFMKDGP 123

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR---QSAPFQTT 188
           LDMRM   SG+  S  +  A+V+D+T ++   GE+K A RIA  IV  R   ++ P   T
Sbjct: 124 LDMRMDPTSGMPVSQWLLTADVEDITWVIREFGEDKHAWRIAKGIVAYRDNEENEPLTRT 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ LI      +   + HPATR+FQA RI++N+E++E+   L  A      GG L V+
Sbjct: 184 GQLAKLISDVAPKNFKEKKHPATRTFQAFRIYINSELDEIDTALNGALDVFAEGGRLSVI 243

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITK---KVVVPTQEDVAFN 303
           SFHSLEDR+VK F    S +   V H IP   N   A+  +  K   K + PT  +V  N
Sbjct: 244 SFHSLEDRMVKHFIRKES-RGPQVPHGIPLTENQIKALGSAKMKPIGKAIKPTVNEVDVN 302

Query: 304 RRSRSAKLRAGMR 316
            RSRS+ LR   R
Sbjct: 303 VRSRSSVLRIAER 315


>gi|295106887|emb|CBL04430.1| S-adenosyl-methyltransferase MraW [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 323

 Score =  199 bits (506), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 120/320 (37%), Positives = 185/320 (57%), Gaps = 18/320 (5%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65
           M+S        H PVLL + +   N  P +  +DAT G  G+S    K+   G  +I +D
Sbjct: 1   MTSEYQQQEFQHTPVLLAECLEQSNLKPQQTFVDATLGGAGHSLEMAKLIGPGGTLIGID 60

Query: 66  RDPFAVSCGQ---ETMRD-YKEQFSLFQATFSQLQDY-----VPDKGVDGVVFDLGVSSM 116
           +D  A++  +   E++ D  +    L +  F  + D      VP  GVD  +FDLGVSS+
Sbjct: 61  QDEVALAAARSRLESLPDGQRPNLELLRGNFGDMDDLLVSAEVP--GVDAFLFDLGVSSV 118

Query: 117 QIDCGDRGFSFQKSGPLDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAH 174
           QID   RGFSF+++GPLDMRM    + ++A+++VN  N  DLTRI+    +EK ASRIA 
Sbjct: 119 QIDTPSRGFSFKENGPLDMRMDPGKTTLTAAEIVNTYNAADLTRIIRAYSDEKWASRIAD 178

Query: 175 AIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLR 233
            IV+ R +   +T++ L  +I+  +  S +    HPA R+FQALRI VN+E++ L +GL 
Sbjct: 179 FIVRSRANGRIETSEQLVDVIKAAIPASARRAGGHPAKRTFQALRIEVNSELDVLRRGLD 238

Query: 234 SAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKV 292
           +A + L  GG L+V+S+HSLEDR+VK+ F + + +      + +       +   +T+K 
Sbjct: 239 AAVRWLNPGGRLVVISYHSLEDRIVKETFNAYANRCTCPPDLPVCVCGKEPILDLVTRKP 298

Query: 293 VVPTQEDVAFNRRSRSAKLR 312
           ++PT  ++  N R+RSAKLR
Sbjct: 299 LLPTAGEIERNPRARSAKLR 318


>gi|88606985|ref|YP_505272.1| S-adenosyl-methyltransferase MraW [Anaplasma phagocytophilum HZ]
 gi|123495035|sp|Q2GK29|RSMH_ANAPZ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|88598048|gb|ABD43518.1| S-adenosyl-methyltransferase MraW [Anaplasma phagocytophilum HZ]
          Length = 295

 Score =  199 bits (506), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 132/303 (43%), Positives = 180/303 (59%), Gaps = 25/303 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78
           H PVLL +++ LL+P  G V +DATFG GGYSR   +     V+A+D+DP A    Q   
Sbjct: 4   HRPVLLNEMLELLSPKDGAVYVDATFGGGGYSRGILERAKCTVLAIDQDPIASEFYQSLH 63

Query: 79  RDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
             +  +   F + FS+L++   +     VDGVVFD+GVSSMQ+   DRGFSF K GPLDM
Sbjct: 64  SQFPGRVHFFLSKFSRLREALQHFDHNQVDGVVFDVGVSSMQLSDPDRGFSFMKEGPLDM 123

Query: 136 RMS---CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA-PFQTTQDL 191
           RM        SA+  VN  + KD+  ++   G E+ + R+  AI+  R+S    + T DL
Sbjct: 124 RMDMLRSQSKSAATFVNSLSEKDMADVIFYYGGERLSRRVTRAIISARESNNKIRNTSDL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + +I+  V  SK N I PATR+FQA+RI+VN+E+EEL  GL +A + +  GG +IV SFH
Sbjct: 184 AKIIRSVVPRSKANPIDPATRTFQAIRIWVNDELEELKAGLEAASQIVGVGGKIIVTSFH 243

Query: 252 SLEDRLVK-KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK KF A R                   FQ I KK + PT+++++ N RSRSAK
Sbjct: 244 SLEDRIVKHKFNALREKG----------------FQLINKKAIKPTEKEISENTRSRSAK 287

Query: 311 LRA 313
           LR 
Sbjct: 288 LRG 290


>gi|84495974|ref|ZP_00994828.1| putative S-adenosylmethionine-dependent methyltransferase
           [Janibacter sp. HTCC2649]
 gi|84382742|gb|EAP98623.1| putative S-adenosylmethionine-dependent methyltransferase
           [Janibacter sp. HTCC2649]
          Length = 350

 Score =  199 bits (506), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 118/310 (38%), Positives = 179/310 (57%), Gaps = 14/310 (4%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74
           HVPVL ++++ LL PA   PG V++D T G GG++ +F +    + VI +DRD  A++  
Sbjct: 35  HVPVLRDRIVELLAPALTEPGSVLVDGTLGMGGHAEAFLEACPEATVIGIDRDEEALALA 94

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            E +  + ++F    A + ++ D V D G   V  V+FDLGVSS+Q+D  DRGF++ +  
Sbjct: 95  GERLARFGDRFRGVHAVYDEIGDVVKDLGLRDVQAVLFDLGVSSLQLDEADRGFAYAQDA 154

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM   SGI+A++V+N     DL RIL   GEE+ A RI  ++V+ R+  PF  +  
Sbjct: 155 PLDMRMDQGSGITAAEVLNTYAPADLLRILRDFGEERFAKRIVSSVVRERELEPFTRSAR 214

Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  L++  V   S+    HPA R+FQALRI VN+E+    + +  +   L  GG + V+S
Sbjct: 215 LVELLRAAVPAASQRTGGHPAKRTFQALRIEVNDELGAWQRAVLGSIDVLAVGGRIAVLS 274

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +HSLEDR+ K+     +G   +    IP     H A  + +T+    P++ + + N RS 
Sbjct: 275 YHSLEDRITKRALV--AGATSSTPPGIPVELPEHAAYLRLLTRGAEEPSESEQSTNPRSA 332

Query: 308 SAKLRAGMRT 317
           SA+LR   RT
Sbjct: 333 SARLRVAERT 342


>gi|312885181|ref|ZP_07744860.1| S-adenosyl-methyltransferase MraW [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309367121|gb|EFP94694.1| S-adenosyl-methyltransferase MraW [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 316

 Score =  199 bits (506), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 126/309 (40%), Positives = 176/309 (56%), Gaps = 20/309 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H+ VLL + I  L+  P  + +D TFG GG+SR+   K+G N  + ++DRDP A++   E
Sbjct: 7   HISVLLNESIDGLSIKPDGIYIDGTFGRGGHSRTILSKLGENGRLFSIDRDPQAIA---E 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +    +FS+    FS + DY         VDGV+ DLGVSS Q+D  +RGFSF K GP
Sbjct: 64  AKKIQDPRFSIIHGPFSGIADYAETYDLVGKVDGVLLDLGVSSPQLDDAERGFSFMKDGP 123

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---PFQTT 188
           LDMRM   SGI  S  + +A + D+T ++   GE+K A RIA +IV  R++A   P   T
Sbjct: 124 LDMRMDPSSGIPVSQWLLEAELDDITWVIREFGEDKHARRIAKSIVAYRENADNPPLTRT 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ LI ++   S   + HPATR+FQA RI++N+E++E+   L+ A   L   G L V+
Sbjct: 184 GQLAKLISESAPKSFKEKKHPATRAFQAFRIYINSELDEIDTALKGAVNILATKGRLSVI 243

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSN-----AHPAVFQSITKKVVVPTQEDVAFN 303
           SFHSLEDR+VK F    S K   V H IP       A  +       K + P+ ++V  N
Sbjct: 244 SFHSLEDRMVKHFIRKES-KGPQVPHGIPLTEEQIQALGSANLKAVGKAIKPSSKEVDEN 302

Query: 304 RRSRSAKLR 312
            RSRS+ LR
Sbjct: 303 TRSRSSVLR 311


>gi|238784576|ref|ZP_04628583.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia
           bercovieri ATCC 43970]
 gi|238714542|gb|EEQ06547.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia
           bercovieri ATCC 43970]
          Length = 320

 Score =  199 bits (506), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 121/311 (38%), Positives = 179/311 (57%), Gaps = 15/311 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN     + +D TFG GG+SR    ++G    +IA+DRDP A+   + 
Sbjct: 14  HTSVLLDEAVNGLNIRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDRDPQAIEAAKS 73

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  +FS+    FS+L  YV +      +DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 74  IT---DPRFSIVHGPFSELAHYVRELDLVGRIDGILLDLGVSSPQLDDPERGFSFMRDGP 130

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G+SA++ + +A+  D+  +L   GEE+ A R+A AIV+R  + P   T++L
Sbjct: 131 LDMRMDPTRGLSAAEWLMKASADDIAWVLKTFGEERFAKRLAKAIVERNLTQPMTRTKEL 190

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI     F + ++ HPATRSFQA+RI++N+E+EE+ + L  A + L   G L V+SFH
Sbjct: 191 ADLIANASPFREKHK-HPATRSFQAIRIYINSELEEIERALDGAHEVLADEGRLSVISFH 249

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNRRSRS 308
           SLEDR+VK F   RS        +  + A        T K +   +P   +VA N R+RS
Sbjct: 250 SLEDRIVKNFIRQRSRGPQVPAGLPLTEAQLRSMGGRTMKSIGKMMPADAEVAENPRARS 309

Query: 309 AKLRAGMRTVE 319
           + LR   R  E
Sbjct: 310 SVLRFAERIKE 320


>gi|325925694|ref|ZP_08187072.1| S-adenosyl-methyltransferase MraW [Xanthomonas perforans 91-118]
 gi|325543910|gb|EGD15315.1| S-adenosyl-methyltransferase MraW [Xanthomonas perforans 91-118]
          Length = 347

 Score =  199 bits (506), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 123/299 (41%), Positives = 173/299 (57%), Gaps = 11/299 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HVPVL  +V+  L        LD TFG GG++R   +    G  ++ +D+DP A++  + 
Sbjct: 18  HVPVLYTQVLDGLQVTENGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDPEAIAVAEH 77

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
           +      + S+ + +F+ L   V    VDG++ DLGVSS Q+D   RGFSF K GPLDMR
Sbjct: 78  SF-GGDARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLDVAGRGFSFGKDGPLDMR 136

Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M   +G SA+  + QA+ +++  +L   GEE+Q+ RIA AIV RR   P   T  L+ LI
Sbjct: 137 MDPDNGQSAAQWLAQASEREIADVLWTYGEERQSRRIARAIVARRAEQPLLRTAQLADLI 196

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
             +V    +++ HPATRSFQA+RI +N E+ +L  GL +A  ALK GG L V+SFHSLED
Sbjct: 197 -ASVMPRGDSKTHPATRSFQAIRIHINRELADLEAGLDAALDALKPGGRLAVISFHSLED 255

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           R+VK+F A R  K       +P  A P V   Q ++  +     E +  N R+RSA LR
Sbjct: 256 RIVKQFMA-RYAKAPPSNRRLP-EAQPFVPTLQLVSGAIKADDAE-LIVNPRARSAVLR 311


>gi|330811587|ref|YP_004356049.1| S-adenosyl-methyltransferase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379695|gb|AEA71045.1| S-adenosyl-methyltransferase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 315

 Score =  199 bits (506), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 122/308 (39%), Positives = 182/308 (59%), Gaps = 20/308 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQ 75
           +H+ VLL++ +  L   P    LD TFG GG+SR   S    G  ++  D+DP A++ GQ
Sbjct: 8   NHITVLLDEAVEALAVRPDGCYLDGTFGRGGHSRLILSKLGPGGRLLGFDKDPQAIATGQ 67

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
             +     +F + Q +F++L   V ++G    V GV+ DLGVSS Q+D  +RGFSF   G
Sbjct: 68  -ALAAEDGRFVIVQRSFAELASEVAERGLAGKVSGVLLDLGVSSPQLDDPERGFSFLNDG 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  S GISA++ VN A V+++ R+    GEE+ + R+A A+V+RR   PF+ T D
Sbjct: 127 PLDMRMDPSRGISAAEFVNTAPVEEIARVFKEYGEERFSGRMARAVVERRDIKPFERTGD 186

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ ++ K    +     +PATR+FQ LRI VNNE+ +L  GL +A +AL+ GG L+V+SF
Sbjct: 187 LAEVL-KVANPAWEKGKNPATRAFQGLRIHVNNELGDLEVGLEAALEALEIGGRLVVISF 245

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVV------PTQEDVAFNR 304
           HSLEDR+VK F    +         +P N  P  F++   K+ +       ++ ++  N 
Sbjct: 246 HSLEDRIVKLFMRKLT---KGEADNLPRNL-PVRFEAFVPKIKIHGKAQFASEAELKANP 301

Query: 305 RSRSAKLR 312
           R+RSA +R
Sbjct: 302 RARSAVMR 309


>gi|332288560|ref|YP_004419412.1| S-adenosyl-methyltransferase MraW [Gallibacterium anatis UMN179]
 gi|330431456|gb|AEC16515.1| S-adenosyl-methyltransferase MraW [Gallibacterium anatis UMN179]
          Length = 321

 Score =  199 bits (506), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 124/315 (39%), Positives = 182/315 (57%), Gaps = 20/315 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76
           H  VLL + +  L   P  + +D TFG GG+SR   S       +IA+DRDP A++  Q 
Sbjct: 11  HFTVLLNEAVDGLAIKPNGIYIDGTFGRGGHSRRILSLLGEHGRLIAIDRDPQAIAAAQ- 69

Query: 77  TMRDYKEQFSLFQATFSQLQD----YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           +++D +  FS+    FS++ +    Y     +DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 70  SIQDPR--FSIEHHNFSEINEICEKYQLIGKIDGILLDLGVSSPQLDQAERGFSFMQDGP 127

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA------PF 185
           LDMRM  + G+SA+  + Q +  DL  +L   GEE+ A RIA  IV+  Q A      P 
Sbjct: 128 LDMRMDTTKGLSAAQWLQQVSESDLAWVLKTFGEERFAKRIARNIVQFNQQAKLNGTEPL 187

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
             T  L+ LI +++   + ++ HPATRSFQA+RIF+N+E+EEL + L +A   L   G L
Sbjct: 188 TRTLQLAQLIAQSIPLKEKHK-HPATRSFQAIRIFINSELEELEKILTAAIDVLAPQGRL 246

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ--SITKKVVVPTQEDVAFN 303
            ++SFHSLEDRLVK+F   +S      R +  +       Q   I  K ++P+++++A N
Sbjct: 247 SIISFHSLEDRLVKRFMKKQSKGDDIPRGLPLTEDQIERNQKLKIIGKAIMPSEQEIAVN 306

Query: 304 RRSRSAKLRAGMRTV 318
            RSRSA LR   R +
Sbjct: 307 SRSRSAVLRVAERLL 321


>gi|255656635|ref|ZP_05402044.1| S-adenosyl-methyltransferase [Clostridium difficile QCD-23m63]
 gi|296449909|ref|ZP_06891673.1| S-adenosyl-methyltransferase MraW [Clostridium difficile NAP08]
 gi|296878290|ref|ZP_06902299.1| S-adenosyl-methyltransferase MraW [Clostridium difficile NAP07]
 gi|296261179|gb|EFH08010.1| S-adenosyl-methyltransferase MraW [Clostridium difficile NAP08]
 gi|296430738|gb|EFH16576.1| S-adenosyl-methyltransferase MraW [Clostridium difficile NAP07]
          Length = 311

 Score =  199 bits (506), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 118/309 (38%), Positives = 176/309 (56%), Gaps = 15/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           HV VLL + I  LN  P  V +D T G  G+S+   K  S+    I  D+D  A++  +E
Sbjct: 5   HVSVLLNECIENLNIKPDGVYVDCTMGGAGHSKEIVKKLSDKGLFIGFDQDKNAINTAKE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + +Y+ +     + F  +++ +   GV   DGV+ DLGVSS Q+D  DRGFS+ +  PL
Sbjct: 65  RLSEYEGRVKFVHSNFENIKEELEKIGVYKIDGVLADLGVSSHQLDEADRGFSYMQDAPL 124

Query: 134 DMRMS--CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           DMRM   C   SA DVVN     +LT+I+   GE+  A RIA  IV+ R +   +TT +L
Sbjct: 125 DMRMDVRCE-FSAYDVVNTYTEDELTKIIKDYGEDNWAKRIAKFIVEERANKTIETTGEL 183

Query: 192 SSLIQKTVYFSKNNRI---HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             +I+K +   K  RI   HPA R+FQA+RI VNNE+  + + +  A   +  GG + ++
Sbjct: 184 VDIIKKAI--PKKARIDGPHPAKRTFQAIRIEVNNELGVITKMINDASSIMNEGGRICII 241

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+VK  F   +   +  +H+ I      +  + IT+K ++P++E+V  N RSR
Sbjct: 242 TFHSLEDRIVKNAFKYLASDCICPQHLPICQCDKESEVKIITRKPILPSEEEVEANPRSR 301

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 302 SAKLRVAEK 310


>gi|222100677|ref|YP_002535245.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Thermotoga neapolitana DSM 4359]
 gi|262825854|sp|B9KA96|RSMH_THENN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|221573067|gb|ACM23879.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Thermotoga neapolitana DSM 4359]
          Length = 300

 Score =  199 bits (505), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 118/305 (38%), Positives = 186/305 (60%), Gaps = 30/305 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77
           H+PV++ +VI  L P   K+ILD T G GG++R+  +   G  +I +D D   +   ++ 
Sbjct: 8   HIPVMVREVIEYLKPEDEKIILDCTVGEGGHARAILEHCPGCKLIGIDVDSEVLQIAEKK 67

Query: 78  MRDYKEQFSLFQATFSQ---LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++D+ ++ SLF+A++     L   +  + VDG++ DLGVS+ Q+   +RGF+F++  PLD
Sbjct: 68  LKDFSDRVSLFKASYRDADFLLKTLEIEKVDGILLDLGVSTYQLKGENRGFTFEREEPLD 127

Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQ-ASRIAHAIVKRRQSAPFQTTQDLS 192
           MRM   S I+A  V+N+ + ++L RI+   GEEK+ A RIA  IV+ R   P  TT DL 
Sbjct: 128 MRMDLESEITAQKVLNELSEEELARIIFEYGEEKRYARRIARKIVENR---PLNTTLDLV 184

Query: 193 SLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQG-LRSAEKALKAGGLLIVVS 249
             + + +  +  +  + H ATR+FQA+RI+VN E+E L +  L  AEK L+ GG ++V+S
Sbjct: 185 KAVSEALPSHEIRRRKRHFATRTFQAIRIYVNRELENLREFLLNKAEKLLRVGGRIVVIS 244

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDR+VK+ F  R+ + + +               +T+K V P++E+V  N RSRSA
Sbjct: 245 FHSLEDRIVKEAF--RNSRKLRI---------------LTEKPVRPSEEEVRENPRSRSA 287

Query: 310 KLRAG 314
           +LRA 
Sbjct: 288 RLRAA 292


>gi|212712749|ref|ZP_03320877.1| hypothetical protein PROVALCAL_03846 [Providencia alcalifaciens DSM
           30120]
 gi|212684665|gb|EEB44193.1| hypothetical protein PROVALCAL_03846 [Providencia alcalifaciens DSM
           30120]
          Length = 317

 Score =  199 bits (505), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 129/317 (40%), Positives = 181/317 (57%), Gaps = 24/317 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           HV VLL++ +  LN  P  + +D TFG GG+SR    ++G    +IA+DRDP A+   QE
Sbjct: 8   HVTVLLDEAVNGLNIKPNGIYIDGTFGRGGHSRLILSQLGEQGRLIAIDRDPEAIKAAQE 67

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  +F +    FS + DYV ++G    +DGV+ DLGVSS Q+D  +RGFSF + GP
Sbjct: 68  I---NDPRFMIKHGPFSAIADYVEEEGLVGKIDGVLLDLGVSSPQLDDPERGFSFMRDGP 124

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR---QSAPFQTT 188
           LDMRM  + G SA   +  A   D+  +L   GEE+ + RIA AIV+R    +  P   T
Sbjct: 125 LDMRMDPTRGQSAQQWLMTAEADDIAWVLKTFGEERFSKRIARAIVERNHNPEEEPLTRT 184

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           + L+ LI K V   K+   HPATRSFQA+RI++N+E+EE+ + L  A   L   G L V+
Sbjct: 185 RHLAELIAK-VSPIKDRHKHPATRSFQAIRIYINSELEEIEKALNGAMSVLAPEGRLSVI 243

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIP------SNAHPAVFQSITKKVVVPTQEDVAF 302
           SFHSLEDRLVK+F    S    +V   IP           A  +++ K  + P++ ++  
Sbjct: 244 SFHSLEDRLVKRFIRQNSTGP-SVPAGIPLTEAQIKELGAAKLRALGK--MKPSELEIDE 300

Query: 303 NRRSRSAKLRAGMRTVE 319
           N R+RS+ LR   R VE
Sbjct: 301 NPRARSSVLRFAERAVE 317


>gi|78046379|ref|YP_362554.1| S-adenosyl-methyltransferase MraW [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|88909226|sp|Q3BXF9|RSMH_XANC5 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|78034809|emb|CAJ22454.1| S-adenosyl-methyltransferase [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 337

 Score =  199 bits (505), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 123/299 (41%), Positives = 173/299 (57%), Gaps = 11/299 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HVPVL  +V+  L        LD TFG GG++R   +    G  ++ +D+DP A++  + 
Sbjct: 8   HVPVLYTQVLDGLQVTENGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDPEAIAVAEH 67

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
           +      + S+ + +F+ L   V    VDG++ DLGVSS Q+D   RGFSF K GPLDMR
Sbjct: 68  SF-GGDARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLDVAGRGFSFGKDGPLDMR 126

Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M   +G SA+  + QA+ +++  +L   GEE+Q+ RIA AIV RR   P   T  L+ LI
Sbjct: 127 MDPDNGQSAAQWLAQASEREIADVLWTYGEERQSRRIARAIVARRAEQPLLRTAQLADLI 186

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
             +V    +++ HPATRSFQA+RI +N E+ +L  GL +A  ALK GG L V+SFHSLED
Sbjct: 187 -ASVMPRGDSKTHPATRSFQAIRIHINRELADLEAGLDAALDALKPGGRLAVISFHSLED 245

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           R+VK+F A R  K       +P  A P V   Q ++  +     E +  N R+RSA LR
Sbjct: 246 RIVKQFMA-RYAKAPPSNRRLP-EAQPFVPTLQLVSGAIKADDAE-LNVNPRARSAVLR 301


>gi|8134813|sp|P73460|RSMH_SYNY3 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|1652579|dbj|BAA17500.1| sll1144 [Synechocystis sp. PCC 6803]
          Length = 305

 Score =  199 bits (505), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 131/325 (40%), Positives = 185/325 (56%), Gaps = 43/325 (13%)

Query: 1   MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS- 59
           ME  + K  + A  H    HV VL   ++  L P PG   LDAT GAGG+S    K+G  
Sbjct: 6   MEGMNLKQTAIADFH----HVSVLPTALVEGLEPKPGGYYLDATVGAGGHSERLLKLGIP 61

Query: 60  -NVIALDRDPFAVSCGQETMR----DYKE-QFSLFQATFS----QLQDYVPDKGVDGVVF 109
             +  +DRD  A++   E ++    D K+   + +Q  F+    QL+ +      DG++ 
Sbjct: 62  LALTMIDRDVQAIAAAMERLQPLVADRKDISINTWQGNFADFPGQLEQF------DGIIA 115

Query: 110 DLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQ 168
           DLGVSS Q+D GDRGFSF+ + PLDMRM  S  ++A++++N  + KDL RI    GEE+ 
Sbjct: 116 DLGVSSPQLDQGDRGFSFRHTAPLDMRMDQSQDLTAAEIINHWSEKDLARIFYEYGEERL 175

Query: 169 ASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEE 227
           + RIA  IV++R   PFQTT DL+  I K V    ++ RIHPATR+FQ LRI VN+E+  
Sbjct: 176 SRRIARQIVEQR---PFQTTTDLAEAITKWVPGKYRHGRIHPATRTFQGLRIAVNDELGS 232

Query: 228 LAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS 287
           L + +  A   LK+GG   ++SFHSLEDR+VK  F  R  + + V               
Sbjct: 233 LEKFIAQAPHWLKSGGKFGIISFHSLEDRIVKHRF--RETENLRV--------------- 275

Query: 288 ITKKVVVPTQEDVAFNRRSRSAKLR 312
           +TKK ++  +E+   N R+RSAKLR
Sbjct: 276 LTKKPIIAGEEEQRQNPRARSAKLR 300


>gi|296116429|ref|ZP_06835043.1| S-adenosyl-methyltransferase MraW [Gluconacetobacter hansenii ATCC
           23769]
 gi|295977022|gb|EFG83786.1| S-adenosyl-methyltransferase MraW [Gluconacetobacter hansenii ATCC
           23769]
          Length = 340

 Score =  199 bits (505), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 132/317 (41%), Positives = 181/317 (57%), Gaps = 20/317 (6%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQE 76
           G H+PV+L +V+  L P  G   LD TFG GGY+R+        + A+DRDP A++ G  
Sbjct: 13  GGHIPVMLAEVLCDLAPRDGATYLDGTFGGGGYARAILSAAECTLWAIDRDPAAIARGAA 72

Query: 77  ---TMRDYKEQ--FSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQ 128
              +  D +EQ    L +  F  +   +  +GVD   GVV DLGVSS QID  +RGFSF+
Sbjct: 73  LATSFPDGQEQSRLRLIKGGFGDMASLLAARGVDALDGVVLDLGVSSYQIDQPERGFSFR 132

Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             GPLDMRM   G +A+DVVN+    +L  I+   GEE+ + R+A AIV  R   P  TT
Sbjct: 133 MDGPLDMRMGDEGTTAADVVNRYQESELADIIYTYGEERMSRRVARAIVAARAENPITTT 192

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ +++  V   ++  I PATR+FQ LRI+VN+E+ ++ +GL  A   L  GG L+VV
Sbjct: 193 AALADIVRSVVRADRSG-IDPATRTFQGLRIYVNDELGQIERGLEQALGLLAPGGRLVVV 251

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIP-----SNAHPAVFQSITKKVVVPTQEDVAFN 303
           SFHSLEDRLVK      SG++       P     S   PA F+ +  K + P+  +   N
Sbjct: 252 SFHSLEDRLVKLAMNRASGRMPGPSRHDPGAAMQSTQRPA-FRLVRNKAIRPSDTECRHN 310

Query: 304 RRSRSAKLRAGMRTVER 320
            R+RSA+L    RTVER
Sbjct: 311 PRARSARL----RTVER 323


>gi|261493507|ref|ZP_05990029.1| S-adenosylmethionine-dependent methyltransferase [Mannheimia
           haemolytica serotype A2 str. BOVINE]
 gi|261495860|ref|ZP_05992292.1| S-adenosylmethionine-dependent methyltransferase [Mannheimia
           haemolytica serotype A2 str. OVINE]
 gi|261308487|gb|EEY09758.1| S-adenosylmethionine-dependent methyltransferase [Mannheimia
           haemolytica serotype A2 str. OVINE]
 gi|261310840|gb|EEY12021.1| S-adenosylmethionine-dependent methyltransferase [Mannheimia
           haemolytica serotype A2 str. BOVINE]
          Length = 312

 Score =  199 bits (505), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 125/311 (40%), Positives = 180/311 (57%), Gaps = 28/311 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQE 76
           H+ VLL + +  L   P  + +D TFG GG+SR    K+G N  +IA DRDP A++  Q 
Sbjct: 7   HITVLLHEAVDGLAIKPNGIYIDGTFGRGGHSRLILSKLGENGRLIATDRDPRAIAEAQ- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           T+ D +  F +    FS + +     G    +DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 66  TISDPR--FQIEHTAFSAIPELCERMGLVGKIDGILLDLGVSSPQLDEAERGFSFMRDGP 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA--PFQTTQ 189
           LDMRM  + G+SA++ + Q + +DL  +L   GEE+ A RIA A+V   +SA      T 
Sbjct: 124 LDMRMDTTKGLSAAEWLAQVSAEDLAWVLKEFGEERFAKRIAQAVVSYNKSANEKISRTL 183

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            L+ +I   V F K+   HPATRSFQA+RIF+N+E++EL + L SA   L   G L ++S
Sbjct: 184 QLAQIIADAVPF-KDKHKHPATRSFQAIRIFINSELDELEKALNSALTVLAPEGRLSIIS 242

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK--------KVVVPTQEDVA 301
           FHSLEDR+VK+F    S  +   R +      P +   +TK        K ++P++ ++ 
Sbjct: 243 FHSLEDRMVKQFVRKHSKGMDVPRGL------PILEAELTKNIPLKTIGKAIMPSEAEIE 296

Query: 302 FNRRSRSAKLR 312
            N RSRSA LR
Sbjct: 297 ANARSRSAVLR 307


>gi|328873505|gb|EGG21872.1| hypothetical protein DFA_01758 [Dictyostelium fasciculatum]
          Length = 387

 Score =  199 bits (505), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 115/319 (36%), Positives = 181/319 (56%), Gaps = 22/319 (6%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAV 71
           +  G H PV++ +VI  L+   G   +DATFG GG++ +    CK GS VIA+DRDP   
Sbjct: 53  NNYGIHKPVMVNEVIDRLHLKDGHCYIDATFGLGGHTLNILDRCK-GSFVIAVDRDPKIF 111

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD-----GVVFDLGVSSMQIDCGDRGFS 126
               +    Y+++       FS L   + ++G+D     GV+ D G SS+Q+D  DRGFS
Sbjct: 112 ELTAKIRETYQDRLITLHGNFSNLSQLLKERGLDTLKISGVLMDFGCSSLQLDSPDRGFS 171

Query: 127 FQKS--GPLDMRM-----SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
           F+K   GPLDMRM     S   ++A+D++N  + + L  I+   GEE+   ++AH I++R
Sbjct: 172 FRKDFDGPLDMRMNNTDTSTQRLTATDILNTFSNQQLRDIMYYYGEERHTLKVAHEIIRR 231

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
           RQ    + T  L  +I+  + +     +   +R F++LR+FVN+E  E+ +G+R AEK L
Sbjct: 232 RQYERIEKTSQLVDIIESCIPYPAA--MKSISRIFRSLRMFVNDETGEIYRGMREAEKIL 289

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT-KKVVVPTQE 298
             GG L+V+SFHS+EDR+ K+FF +R       R  +    H   F+ +   + + PT E
Sbjct: 290 APGGNLVVISFHSIEDRIAKRFFRNRCA---VKRSTLTPLQHDPSFEYVDGSQPLFPTDE 346

Query: 299 DVAFNRRSRSAKLRAGMRT 317
           ++ +N RS+ A +R+  RT
Sbjct: 347 EIEWNSRSKPAIVRSATRT 365


>gi|258625131|ref|ZP_05720048.1| S-adenosyl-methyltransferase mraW [Vibrio mimicus VM603]
 gi|262166452|ref|ZP_06034189.1| S-adenosyl-methyltransferase MraW [Vibrio mimicus VM223]
 gi|262170644|ref|ZP_06038322.1| S-adenosyl-methyltransferase MraW [Vibrio mimicus MB-451]
 gi|258582582|gb|EEW07414.1| S-adenosyl-methyltransferase mraW [Vibrio mimicus VM603]
 gi|261891720|gb|EEY37706.1| S-adenosyl-methyltransferase MraW [Vibrio mimicus MB-451]
 gi|262026168|gb|EEY44836.1| S-adenosyl-methyltransferase MraW [Vibrio mimicus VM223]
          Length = 316

 Score =  199 bits (505), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 124/309 (40%), Positives = 175/309 (56%), Gaps = 20/309 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H+ VLL + I  L   P  + +D TFG GG+SR+   ++G    + ++DRDP A++  Q+
Sbjct: 7   HISVLLNESIEGLAIKPDGIYIDGTFGRGGHSRTILAQLGPQGRLYSIDRDPQAIAEAQK 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  +F++    FS + +Y         VDGV+FDLGVSS Q+D  +RGFSF K GP
Sbjct: 67  I---DDPRFTIIHGPFSGIAEYAQRYDLVGKVDGVLFDLGVSSPQLDDAERGFSFMKDGP 123

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---PFQTT 188
           LDMRM   SG+  S  + QA++ D+T ++   GE+K A RIA AIV+ R++    P   T
Sbjct: 124 LDMRMDPTSGMPVSAWLAQADLDDITWVIREFGEDKHARRIAKAIVEYRENELNEPLTRT 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ LI      S   + HPATR+FQA RI++N+E+EE+   LR A   L   G L V+
Sbjct: 184 SQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALRGASDILAPQGRLSVI 243

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSN-----AHPAVFQSITKKVVVPTQEDVAFN 303
           SFHSLEDR+VK+F    S +   V H IP       A  +       K + P+ ++V  N
Sbjct: 244 SFHSLEDRMVKRFMRKES-QGPEVPHGIPLTQDQIRALGSAKMKTVGKALKPSDQEVELN 302

Query: 304 RRSRSAKLR 312
            RSRS+ LR
Sbjct: 303 PRSRSSVLR 311


>gi|145223567|ref|YP_001134245.1| S-adenosyl-methyltransferase MraW [Mycobacterium gilvum PYR-GCK]
 gi|145216053|gb|ABP45457.1| S-adenosyl-methyltransferase MraW [Mycobacterium gilvum PYR-GCK]
          Length = 371

 Score =  199 bits (505), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 120/304 (39%), Positives = 174/304 (57%), Gaps = 10/304 (3%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCG 74
           HVPVLL++ + LL PA    G  ++DAT GAGG+S  F     G  +I LDRDP A+   
Sbjct: 61  HVPVLLDRCVELLAPALTREGATLVDATLGAGGHSERFLTDFPGLRLIGLDRDPDALRIA 120

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            E +  + ++ +L +  +  + D V D     VD ++FDLGVSSMQ+D  +RGFS+    
Sbjct: 121 GERLAPFADRITLVRTRYDGIADAVRDAAGGSVDAILFDLGVSSMQLDRVERGFSYSTDA 180

Query: 132 PLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM S + ++A+ V+N  + + L R+L   GEEK A RIA  IV+RR   PF TT +
Sbjct: 181 PLDMRMDSGADLTAAQVLNSYDERALARVLREYGEEKFAGRIAAFIVRRRAVTPFTTTGE 240

Query: 191 LSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  L+   +   ++    HPA R+FQALRI VN E+E L   + +A +AL+  G L V++
Sbjct: 241 LVELLYDAIPAPARRTGGHPAKRTFQALRIEVNAELESLRSAIPAALQALRPHGRLAVMA 300

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           + SLEDR+VK  FA+ +         +    H   F ++T+       E++  N RS   
Sbjct: 301 YQSLEDRIVKTAFAAATASRTPPGLPVELPGHGPEFVALTRGAERADAEEIERNPRSAPV 360

Query: 310 KLRA 313
           +LRA
Sbjct: 361 RLRA 364


>gi|33151483|ref|NP_872836.1| S-adenosyl-methyltransferase MraW [Haemophilus ducreyi 35000HP]
 gi|42559455|sp|Q7VP62|RSMH_HAEDU RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|33147703|gb|AAP95225.1| S-adenosyl-methyltransferase MraW [Haemophilus ducreyi 35000HP]
          Length = 313

 Score =  199 bits (505), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 120/312 (38%), Positives = 186/312 (59%), Gaps = 16/312 (5%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPF 69
           ++ T   H+ VLL + +  L   P  + +D TFG GG+SR    ++ +N  +IA+DRDP 
Sbjct: 1   MNETDHKHITVLLHEAVDGLAIKPNGIYIDGTFGRGGHSRLILSRLATNGRLIAIDRDPC 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGF 125
           A++    T+ D +  F +    FS + +     G    +DG++ DLGVSS Q+D  +RGF
Sbjct: 61  AIAEAN-TISDAR--FQIIHTAFSAIPEVCESLGLMGKIDGILLDLGVSSPQLDDAERGF 117

Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV--KRRQS 182
           SF + GPLDMRM  + G+SA++ + Q +++DL  +L   GEE+ A RIA A+V   +  S
Sbjct: 118 SFMRDGPLDMRMDTTKGLSAAEWLAQVSIEDLAWVLKTFGEERFAKRIAQAVVSYNKTNS 177

Query: 183 APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
                T  L+ +I   V F K+   HPATRSFQA+RIF+N E++EL + L +A + L   
Sbjct: 178 EKITRTLQLAKIIADAVPF-KDKHKHPATRSFQAIRIFINRELDELEKALTNALRVLAPE 236

Query: 243 GLLIVVSFHSLEDRLVKKFFASRS-GKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDV 300
           G L ++SFHSLEDR+VK+F    S G+V+     ++ +  +  +  +I  K ++P++ ++
Sbjct: 237 GRLSIISFHSLEDRMVKQFMKKNSKGEVVPKGLPILEAELNKNIPLNIIGKAIMPSEAEI 296

Query: 301 AFNRRSRSAKLR 312
             N RSRSA LR
Sbjct: 297 VANARSRSAVLR 308


>gi|323491037|ref|ZP_08096229.1| 16S rRNA m(4)C1402 methyltranserfase [Vibrio brasiliensis LMG
           20546]
 gi|323314701|gb|EGA67773.1| 16S rRNA m(4)C1402 methyltranserfase [Vibrio brasiliensis LMG
           20546]
          Length = 316

 Score =  199 bits (505), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 125/309 (40%), Positives = 176/309 (56%), Gaps = 20/309 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H+ VLL + I  L   P  + +D TFG GG+SR+   K+  N  + ++DRDP A++  Q+
Sbjct: 7   HISVLLHESIDGLAIKPDGIYIDGTFGRGGHSRTILSKLDENGRLYSIDRDPQAIAEAQK 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  +F++    FS + +Y  D      VDGV+ DLGVSS Q+D  +RGFSF K GP
Sbjct: 67  I---DDPRFTIIHGPFSGMAEYAADYDLVGKVDGVLLDLGVSSPQLDDAERGFSFMKDGP 123

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---PFQTT 188
           LDMRM   SGI  S  + +A++ D+T ++   GE+K   RIA AIV  R++    P   T
Sbjct: 124 LDMRMDPTSGIPVSQWLMEADLDDITWVIREFGEDKHVRRIAKAIVAYRENEENEPLTRT 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ LI      S   + HPATR+FQA RI++N+E+EE+   L+ A   L   G L V+
Sbjct: 184 SQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAASILAPQGRLSVI 243

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH--PAVFQSITK---KVVVPTQEDVAFN 303
           SFHSLEDR+VK+F    S K   V H IP       A+  +  K   K + P++++V  N
Sbjct: 244 SFHSLEDRMVKRFIRKES-KGPEVPHGIPMTEEQIKALGSADLKPVGKAIKPSKQEVEHN 302

Query: 304 RRSRSAKLR 312
            RSRS+ LR
Sbjct: 303 ARSRSSVLR 311


>gi|329295550|ref|ZP_08252886.1| 16S rRNA m(4)C1402 methyltranserfase [Plautia stali symbiont]
          Length = 313

 Score =  199 bits (505), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 126/309 (40%), Positives = 184/309 (59%), Gaps = 15/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN     + +D TFG GG+SR    ++G++  ++A+DRDP A++   E
Sbjct: 7   HTTVLLDEAVNGLNIREDGIYIDGTFGRGGHSRLILSQLGAHGQLLAIDRDPQAIAAAAE 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            ++D +  FS+    FS L +YV ++G    +DGV+ DLGVSS Q+D  +RGFSF + GP
Sbjct: 67  -IKDPR--FSIVHGPFSALAEYVEERGLTGKIDGVLLDLGVSSPQLDDAERGFSFMRDGP 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM    G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   T++L
Sbjct: 124 LDMRMDPRRGQSAAEWLQSAEEADIAFVLKTYGEERFAKRIARAIVERNREQPMTRTKEL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI       K+   HPATRSFQA+RI++N+E+EE+   L+ A   L  GG L ++SFH
Sbjct: 184 ADLIAAATPV-KDKFKHPATRSFQAIRIWLNSELEEIDIALKGALTVLAPGGRLSIISFH 242

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSI-TKKVVVPTQEDVAFNRRSRS 308
           SLEDRLVK+F    SR  +V A   M  S       + + T   ++  + +V  N R+RS
Sbjct: 243 SLEDRLVKRFMRDQSRGPQVPAGIPMTESQLKALGGRELKTLGKLILGEAEVKDNPRARS 302

Query: 309 AKLRAGMRT 317
           + LR   RT
Sbjct: 303 SVLRIAERT 311


>gi|260596507|ref|YP_003209078.1| 16S rRNA m(4)C1402 methyltranserfase [Cronobacter turicensis z3032]
 gi|260215684|emb|CBA28014.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Cronobacter turicensis z3032]
          Length = 313

 Score =  199 bits (505), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 123/309 (39%), Positives = 178/309 (57%), Gaps = 15/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN  P  + +D TFG GG+SR    ++G    ++A+DRDP        
Sbjct: 7   HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEQGRLLAIDRDP---QAIAA 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  +FS+    FS L DYV ++     +DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 64  AAAIDDPRFSIIHGPFSALGDYVRERELQGKIDGILLDLGVSSPQLDDPERGFSFMRDGP 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   T++L
Sbjct: 124 LDMRMDPTRGQSAAEWLRNAEEADIAWVLKTFGEERFAKRIARAIVERNRELPMTRTKEL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+ A   L  GG L V+SFH
Sbjct: 184 AEVVAAATPI-KDKFKHPATRTFQAVRIWVNSELEEIEQALKGAVDVLAPGGRLSVISFH 242

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITK-KVVVPTQEDVAFNRRSRS 308
           SLEDRLVK+F    SR  +V A   M  +       + +     ++P + +VA N R+RS
Sbjct: 243 SLEDRLVKRFMREQSRGPQVPAGLPMTEAQLQKLGGRDLRALGKLMPGEAEVAENPRARS 302

Query: 309 AKLRAGMRT 317
           + LR   RT
Sbjct: 303 SVLRIAERT 311


>gi|227494640|ref|ZP_03924956.1| S-adenosyl-methyltransferase [Actinomyces coleocanis DSM 15436]
 gi|226831822|gb|EEH64205.1| S-adenosyl-methyltransferase [Actinomyces coleocanis DSM 15436]
          Length = 344

 Score =  199 bits (505), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 114/308 (37%), Positives = 189/308 (61%), Gaps = 14/308 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKV----ILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSC 73
           H PVL+++V+ LL PA   V    ++DAT G GG++ +      NV  I +DRDP A+  
Sbjct: 22  HEPVLIDEVLDLLAPAFTGVEIATMIDATLGMGGHTEAVITAFPNVRVIGIDRDPNAIRL 81

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQK 129
             + +  + E+F    AT+  + +   + G    +D V+ DLGVSS+Q+D  +RGF++ +
Sbjct: 82  ASKRLESFGERFKAVHATYDSVYEVAEENGLAGKIDAVLMDLGVSSLQLDDDERGFAYSR 141

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           +  LDMRM  + GI+A++++  A+  +LTRIL   GEEK ASRIA  I K+R++ P +T+
Sbjct: 142 NTYLDMRMDPTQGITAAELLATASAAELTRILRTFGEEKFASRIARNIEKQRETKPIETS 201

Query: 189 QDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L+ +++ ++   ++    +PA R+FQALR+ VN E++ LA  + +A ++LK GG L+V
Sbjct: 202 LELTEIVRASIPAAARRQGGNPAKRTFQALRVAVNEELDILADAVPAALESLKVGGRLVV 261

Query: 248 VSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
            S+ SLEDR+VK      S   +     +IP +  P+  +++T+K +  T+E +A N R+
Sbjct: 262 ESYQSLEDRIVKNVIKDGSEINIPPGLPVIPDHLKPS-LENVTRKAIQATEEQIADNPRA 320

Query: 307 RSAKLRAG 314
            S +LRA 
Sbjct: 321 ASVRLRAA 328


>gi|22299615|ref|NP_682862.1| putative methyltransferase [Thermosynechococcus elongatus BP-1]
 gi|30173039|sp|Q8DH87|RSMH_THEEB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|22295799|dbj|BAC09624.1| tlr2072 [Thermosynechococcus elongatus BP-1]
          Length = 290

 Score =  199 bits (505), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 120/301 (39%), Positives = 171/301 (56%), Gaps = 25/301 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H PVL   V+  L P  G + LDAT G GG++    +      V+A+D+DP A++  QE 
Sbjct: 10  HQPVLAPAVLEALQPKAGGLYLDATVGGGGHTALLLRREPTCRVLAIDQDPMALAAAQEF 69

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
           +  + ++   +   F+ L   V +   DG++ DLGVSS Q+D  +RGFSF+   PLDMRM
Sbjct: 70  LAPFGDRVQFWHGNFADLP--VAEPMFDGILADLGVSSAQLDRPERGFSFRFDAPLDMRM 127

Query: 138 S-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
           +  + ++A+ V+N  + ++L  I    GEE+ A RIA  IV RR   P   TQ+L+ L+ 
Sbjct: 128 NPANPLTAATVINHYSEQELADIFYEYGEERFARRIARQIVARR---PLNRTQELAQLVA 184

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
             +  S   RIHPATR FQALRI+VN E+  L Q L  +   LK  G + V+SFHSLEDR
Sbjct: 185 HCLKASPRQRIHPATRVFQALRIYVNQELAVLDQFLARSPHWLKPTGRIAVISFHSLEDR 244

Query: 257 LVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
            VK+  A R+  ++ V               +T+K +V    +V+ N RSRSAKLR  +R
Sbjct: 245 RVKQ--AWRANPLLEV---------------VTRKPIVADAVEVSLNPRSRSAKLRIAVR 287

Query: 317 T 317
           T
Sbjct: 288 T 288


>gi|262831548|sp|A9WRE6|RSMH_RENSM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 331

 Score =  198 bits (504), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 120/309 (38%), Positives = 181/309 (58%), Gaps = 15/309 (4%)

Query: 20  HVPVLLEKVIALLNPA------PGK--VILDATFGAGGYSRSFCKMGSNV--IALDRDPF 69
           HVPVL ++ + LL PA       G+  V++DAT G GG+S +      N+  I +DRD  
Sbjct: 13  HVPVLRDRCVNLLAPAIEAANLAGRRAVVVDATLGMGGHSEAMLTRFENLHLIGIDRDTQ 72

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFS 126
           A+      ++ ++++  L  A + ++ + + D G   +DGV+ DLGVSS+Q+D  +RGF+
Sbjct: 73  ALDLSGARLKPFEDRTDLVHAVYDEITEVLDDLGFESIDGVLMDLGVSSLQLDEAERGFA 132

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           +    PLDMRM  S G SA+DVVN  +  +L  I+   GEEK A RIA+ IV  R   PF
Sbjct: 133 YSYDAPLDMRMDTSRGQSAADVVNSYSETELVSIIRRWGEEKFAGRIANRIVAARAEKPF 192

Query: 186 QTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
             T +L  +I+K V   +     HPA R+FQALRI VN E+  L + + +A  AL  GG 
Sbjct: 193 AGTGELVEVIRKAVPAAAARTGGHPAKRTFQALRIEVNEELVVLERAVPAAVDALAIGGR 252

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
            +V+S+HSLED++VKKFF++           +  ++     +++TK   VPT+ ++A N 
Sbjct: 253 AVVMSYHSLEDKIVKKFFSTGVTSSAPPGFPVELDSQKPELKTLTKGTEVPTEAEIAENP 312

Query: 305 RSRSAKLRA 313
           R+ SA+LRA
Sbjct: 313 RAASARLRA 321


>gi|118464814|ref|YP_881532.1| S-adenosyl-methyltransferase MraW [Mycobacterium avium 104]
 gi|263456513|sp|A0QF44|RSMH_MYCA1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|118166101|gb|ABK66998.1| S-adenosyl-methyltransferase MraW [Mycobacterium avium 104]
          Length = 335

 Score =  198 bits (504), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 122/316 (38%), Positives = 180/316 (56%), Gaps = 18/316 (5%)

Query: 20  HVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPF 69
           HVPVLLE+ + LL PA         G V+LDAT GAGG++  F     G  +IALDRDP 
Sbjct: 10  HVPVLLERCVELLTPALTRRHPDGSGAVLLDATLGAGGHAERFLTDLPGLRLIALDRDPS 69

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQL------QDYVPDKGVDGVVFDLGVSSMQIDCGDR 123
           A+   +E +  + ++ +L    +  +        Y   + VDG++FDLGVSSMQ+D  +R
Sbjct: 70  ALEIARERLARFADRITLVHTRYDGIAAALTESGYAATESVDGILFDLGVSSMQLDRPER 129

Query: 124 GFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GF++ +  PLDMRM   S ++A+D++N  +  +L  IL   GEE+ A RIA  IV+RR  
Sbjct: 130 GFAYAQDAPLDMRMDPGSPLTAADILNTYDEAELADILHRYGEERFARRIAAQIVRRRAK 189

Query: 183 APFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            PF +T DL SL+ + +   ++    HPA R+FQALRI VN+E++ L   L +A  AL  
Sbjct: 190 EPFTSTADLVSLLYQAIPAPARRTGGHPAKRTFQALRIAVNDELDTLRCALPAALDALAV 249

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
            G ++V+++ SLEDR+VK+ FA        V   +    H   F+++T         ++ 
Sbjct: 250 DGRIVVLAYQSLEDRIVKRLFAQAVASRTPVDLPVELPGHEPRFRALTHGAGRADAAEIE 309

Query: 302 FNRRSRSAKLRAGMRT 317
            N RS + +LRA  RT
Sbjct: 310 RNPRSAAVRLRALQRT 325


>gi|222053873|ref|YP_002536235.1| S-adenosyl-methyltransferase MraW [Geobacter sp. FRC-32]
 gi|263455960|sp|B9M164|RSMH_GEOSF RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|221563162|gb|ACM19134.1| S-adenosyl-methyltransferase MraW [Geobacter sp. FRC-32]
          Length = 312

 Score =  198 bits (504), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 123/305 (40%), Positives = 179/305 (58%), Gaps = 13/305 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           HV VL  +VIA L P PG + +D T G  G++R   +  +    +I  D+D  A++   E
Sbjct: 6   HVSVLPAEVIAYLAPRPGGIYVDGTLGGAGHARLILEASAPDGLLIGFDQDGQALASAGE 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  + ++  L +  F+ L++ + + G+   DG + D+GVSS Q+D  +RGFSFQ   PL
Sbjct: 66  RLAPFGKRVVLVKRNFAFLEEALAEIGIEAIDGFLLDVGVSSHQLDTVERGFSFQHDAPL 125

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  S   +A+++VN  + +DL R++   GEE+ A RIA  I+KRR+  P  TT  L 
Sbjct: 126 DMRMDLSAETTAAELVNTLSEEDLCRVIREYGEERWAKRIAAFIIKRREETPIATTLQLV 185

Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  V   +   R+HPATR+FQALRI VN+E+  L +GL    + LK GG  +V+SFH
Sbjct: 186 DVIKAAVPKGAWEVRLHPATRTFQALRIAVNDELASLEKGLSGGVRLLKKGGRGVVISFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP---SNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SLEDR+ K  F S +      R  IP       P V + +T K VV  + +V+ N RSRS
Sbjct: 246 SLEDRIAKTTFRSLAQGCKCPRE-IPRCVCGNLPQV-KVLTGKPVVANEVEVSSNPRSRS 303

Query: 309 AKLRA 313
           A+LRA
Sbjct: 304 ARLRA 308


>gi|15642406|ref|NP_232039.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121587636|ref|ZP_01677400.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|153818411|ref|ZP_01971078.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|153822223|ref|ZP_01974890.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|227082532|ref|YP_002811083.1| S-adenosyl-methyltransferase mraW [Vibrio cholerae M66-2]
 gi|229507529|ref|ZP_04397034.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae BX 330286]
 gi|229512275|ref|ZP_04401754.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae B33]
 gi|229519411|ref|ZP_04408854.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae RC9]
 gi|229607035|ref|YP_002877683.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae MJ-1236]
 gi|254849531|ref|ZP_05238881.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Vibrio
           cholerae MO10]
 gi|255746918|ref|ZP_05420863.1| S-adenosyl-methyltransferase MraW [Vibrio cholera CIRS 101]
 gi|262161539|ref|ZP_06030649.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae INDRE 91/1]
 gi|298500231|ref|ZP_07010036.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae MAK 757]
 gi|20139220|sp|Q9KPF9|RSMH_VIBCH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263504940|sp|C3LQV4|RSMH_VIBCM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|9656982|gb|AAF95552.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121548146|gb|EAX58219.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|126511044|gb|EAZ73638.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|126520233|gb|EAZ77456.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|227010420|gb|ACP06632.1| S-adenosyl-methyltransferase mraW [Vibrio cholerae M66-2]
 gi|229344100|gb|EEO09075.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae RC9]
 gi|229352240|gb|EEO17181.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae B33]
 gi|229355034|gb|EEO19955.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae BX 330286]
 gi|229369690|gb|ACQ60113.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae MJ-1236]
 gi|254845236|gb|EET23650.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Vibrio
           cholerae MO10]
 gi|255735320|gb|EET90720.1| S-adenosyl-methyltransferase MraW [Vibrio cholera CIRS 101]
 gi|262028850|gb|EEY47504.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae INDRE 91/1]
 gi|297540924|gb|EFH76978.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae MAK 757]
          Length = 316

 Score =  198 bits (504), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 124/309 (40%), Positives = 175/309 (56%), Gaps = 20/309 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H+ VLL + I  L   P  + +D TFG GG+SR+   ++G    + ++DRDP A++  Q+
Sbjct: 7   HISVLLNESIEGLAIKPDGIYIDGTFGRGGHSRTILAQLGPEGRLYSIDRDPQAIAEAQK 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  +F++    FS + +Y         VDGV+FDLGVSS Q+D  +RGFSF K GP
Sbjct: 67  I---DDPRFTIVHGPFSGIAEYAQRYDLVGKVDGVLFDLGVSSPQLDDAERGFSFMKDGP 123

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---PFQTT 188
           LDMRM   SG+  S  + QA++ D+T ++   GE+K A RIA AIV+ R++    P   T
Sbjct: 124 LDMRMDPTSGMPVSAWLAQADLDDITWVIREFGEDKHARRIAKAIVEYRENELNEPLTRT 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ LI      S   + HPATR+FQA RI++N+E+EE+   LR A   L   G L V+
Sbjct: 184 SQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALRGASDILAPQGRLSVI 243

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSN-----AHPAVFQSITKKVVVPTQEDVAFN 303
           SFHSLEDR+VK+F    S +   V H IP       A  +       K + P+ ++V  N
Sbjct: 244 SFHSLEDRMVKRFMRKES-QGPQVPHGIPLTQDQIRALGSAKMKTVGKALKPSDQEVELN 302

Query: 304 RRSRSAKLR 312
            RSRS+ LR
Sbjct: 303 PRSRSSVLR 311


>gi|315443914|ref|YP_004076793.1| S-adenosyl-methyltransferase MraW [Mycobacterium sp. Spyr1]
 gi|315262217|gb|ADT98958.1| S-adenosyl-methyltransferase MraW [Mycobacterium sp. Spyr1]
          Length = 353

 Score =  198 bits (504), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 120/304 (39%), Positives = 174/304 (57%), Gaps = 10/304 (3%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCG 74
           HVPVLL++ + LL PA    G  ++DAT GAGG+S  F     G  +I LDRDP A+   
Sbjct: 43  HVPVLLDRCVELLAPALTREGATLVDATLGAGGHSERFLTDFPGLRLIGLDRDPDALRIA 102

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            E +  + ++ +L +  +  + D V D     VD ++FDLGVSSMQ+D  +RGFS+    
Sbjct: 103 GERLAPFADRITLVRTRYDGIADAVRDAAGGSVDAILFDLGVSSMQLDRVERGFSYSTDA 162

Query: 132 PLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM S + ++A+ V+N  + + L R+L   GEEK A RIA  IV+RR   PF TT +
Sbjct: 163 PLDMRMDSGADLTAAQVLNSYDERALARVLREYGEEKFAGRIAAFIVRRRAVTPFTTTGE 222

Query: 191 LSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  L+   +   ++    HPA R+FQALRI VN E+E L   + +A +AL+  G L V++
Sbjct: 223 LVELLYDAIPAPARRTGGHPAKRTFQALRIEVNAELESLRSAIPAALQALRPHGRLAVMA 282

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           + SLEDR+VK  FA+ +         +    H   F ++T+       E++  N RS   
Sbjct: 283 YQSLEDRIVKTAFAAATASRTPPGLPVELPGHGPEFVALTRGAERADAEEIERNPRSAPV 342

Query: 310 KLRA 313
           +LRA
Sbjct: 343 RLRA 346


>gi|312373365|gb|EFR21121.1| hypothetical protein AND_17511 [Anopheles darlingi]
          Length = 384

 Score =  198 bits (504), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 125/345 (36%), Positives = 182/345 (52%), Gaps = 48/345 (13%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF--CKMGSNVIALDRDPFAVSCGQET 77
           H PV+  + +  L P   +  +D TFGAGG+SR+      G+ +IALDRDP A     E 
Sbjct: 38  HRPVMAGETVRFLEPQNNQTFIDMTFGAGGHSRALLGAAPGATIIALDRDPHAHRLACEM 97

Query: 78  MRDYKEQFSLFQATFSQL--------QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
             +Y  +      +FS+L        + Y   + +DG++FD G SSMQ D   RGFS   
Sbjct: 98  ATEYPGRILPVLGSFSELPSLLRTLPEGYGRQRFIDGIIFDFGCSSMQFDEAARGFSIAH 157

Query: 130 SGPLDMRMS---C-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP- 184
            GPLDMRM    C   +SA++V+ +   +DL RIL + GEEKQA +IA AIV  R +   
Sbjct: 158 DGPLDMRMDKDRCPEQLSAAEVLARVQEQDLARILKVYGEEKQAKKIARAIVNARFTVKR 217

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHP--------------------ATRSFQALRIFVNNE 224
            +TT +L+S++   +  ++     P                    AT++FQALRIFVNNE
Sbjct: 218 IETTAELASIVAHCLSSNQATETGPVSSASSFEYRQDKLRRPAHVATKTFQALRIFVNNE 277

Query: 225 IEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV 284
           + E+  G+  A+  L+ GG L+ ++FHSLED +VK+         +A R  +   +H   
Sbjct: 278 LNEINYGMVLAKHLLRTGGKLVTIAFHSLEDTIVKRHLTGHVVDDVASRVPLQFISHTLA 337

Query: 285 -------------FQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
                        ++ +TK VVVP++ +V  N RSRSAKLRA +R
Sbjct: 338 HENDTMQEMMKPNWRQLTKHVVVPSEAEVTANPRSRSAKLRAAVR 382


>gi|258620868|ref|ZP_05715902.1| S-adenosyl-methyltransferase mraW [Vibrio mimicus VM573]
 gi|258586256|gb|EEW10971.1| S-adenosyl-methyltransferase mraW [Vibrio mimicus VM573]
          Length = 316

 Score =  198 bits (504), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 124/309 (40%), Positives = 174/309 (56%), Gaps = 20/309 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H+ VLL + I  L   P  + +D TFG GG+SR+   ++G    + ++DRDP A++  Q 
Sbjct: 7   HISVLLNESIEGLAIKPDGIYIDGTFGRGGHSRTILAQLGPQGRLYSIDRDPQAIAEAQN 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  +F++    FS + +Y         VDGV+FDLGVSS Q+D  +RGFSF K GP
Sbjct: 67  I---DDPRFTIIHGPFSGIAEYAQRYDLVGKVDGVLFDLGVSSPQLDDAERGFSFMKDGP 123

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---PFQTT 188
           LDMRM   SG+  S  + QA++ D+T ++   GE+K A RIA AIV+ R++    P   T
Sbjct: 124 LDMRMDPTSGMPVSAWLAQADLDDITWVIREFGEDKHARRIAKAIVEYRENELNEPLTRT 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ LI      S   + HPATR+FQA RI++N+E+EE+   LR A   L   G L V+
Sbjct: 184 SQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALRGASDILAPQGRLSVI 243

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSN-----AHPAVFQSITKKVVVPTQEDVAFN 303
           SFHSLEDR+VK+F    S +   V H IP       A  +       K + P+ ++V  N
Sbjct: 244 SFHSLEDRMVKRFMRKES-QGPEVPHGIPLTQDQIRALGSAKMKTVGKALKPSDQEVELN 302

Query: 304 RRSRSAKLR 312
            RSRS+ LR
Sbjct: 303 PRSRSSVLR 311


>gi|254774999|ref|ZP_05216515.1| S-adenosyl-methyltransferase MraW [Mycobacterium avium subsp. avium
           ATCC 25291]
          Length = 334

 Score =  198 bits (504), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 122/316 (38%), Positives = 180/316 (56%), Gaps = 18/316 (5%)

Query: 20  HVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPF 69
           HVPVLLE+ + LL PA         G V+LDAT GAGG++  F     G  +IALDRDP 
Sbjct: 10  HVPVLLERCVELLTPALTRRHPDGSGAVLLDATLGAGGHAERFLTDLPGLRLIALDRDPS 69

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQL------QDYVPDKGVDGVVFDLGVSSMQIDCGDR 123
           A+   +E +  + ++ +L    +  +        Y   + VDG++FDLGVSSMQ+D  +R
Sbjct: 70  ALEIARERLARFADRITLVHTRYDGIAAALTESGYAATESVDGILFDLGVSSMQLDRPER 129

Query: 124 GFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GF++ +  PLDMRM   S ++A+D++N  +  +L  IL   GEE+ A RIA  IV+RR  
Sbjct: 130 GFAYAQDAPLDMRMDPGSPLTAADILNTYDEAELADILHRYGEERFARRIAAQIVRRRAK 189

Query: 183 APFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            PF +T DL SL+ + +   ++    HPA R+FQALRI VN+E++ L   L +A  AL  
Sbjct: 190 EPFTSTADLVSLLYQAIPAPARRTGGHPAKRTFQALRIAVNDELDTLRCALPAALDALAV 249

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
            G ++V+++ SLEDR+VK+ FA        V   +    H   F+++T         ++ 
Sbjct: 250 DGRIVVLAYQSLEDRIVKRLFAQAVASRTPVDLPVELPGHEPRFRALTHGAGRADAAEIE 309

Query: 302 FNRRSRSAKLRAGMRT 317
            N RS + +LRA  RT
Sbjct: 310 RNPRSAAVRLRALQRT 325


>gi|254362469|ref|ZP_04978577.1| S-adenosylmethionine-dependent methyltransferase [Mannheimia
           haemolytica PHL213]
 gi|153094061|gb|EDN74973.1| S-adenosylmethionine-dependent methyltransferase [Mannheimia
           haemolytica PHL213]
          Length = 312

 Score =  198 bits (504), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 125/311 (40%), Positives = 179/311 (57%), Gaps = 28/311 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQE 76
           H+ VLL + +  L   P  + +D TFG GG+SR    K+G N  +IA DRDP A++  Q 
Sbjct: 7   HITVLLHEAVDGLAIKPNGIYIDGTFGRGGHSRLILSKLGENGRLIATDRDPRAIAEAQ- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           T+ D +  F +    FS + +     G    +DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 66  TISDPR--FQIEHTAFSAIPELCERMGLVGKIDGILLDLGVSSPQLDEAERGFSFMRDGP 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA--PFQTTQ 189
           LDMRM  + G+SA++ + Q + +DL  +L   GEE+ A RIA A+V   +SA      T 
Sbjct: 124 LDMRMDTTKGLSAAEWLAQVSAEDLAWVLKEFGEERFAKRIAQAVVSYNKSANEKISRTL 183

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            L+ +I   V F K+   HPATRSFQA+RIF+N E++EL + L SA   L   G L ++S
Sbjct: 184 QLAQIIADAVPF-KDKHKHPATRSFQAIRIFINGELDELEKALNSALTVLAPEGRLSIIS 242

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK--------KVVVPTQEDVA 301
           FHSLEDR+VK+F    S  +   R +      P +   +TK        K ++P++ ++ 
Sbjct: 243 FHSLEDRMVKQFVRKHSKGMDVPRGL------PILEAELTKNIPLKTIGKAIMPSEAEIE 296

Query: 302 FNRRSRSAKLR 312
            N RSRSA LR
Sbjct: 297 ANARSRSAVLR 307


>gi|145595735|ref|YP_001160032.1| S-adenosyl-methyltransferase MraW [Salinispora tropica CNB-440]
 gi|262826474|sp|A4X9S3|RSMH_SALTO RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|145305072|gb|ABP55654.1| S-adenosyl-methyltransferase MraW [Salinispora tropica CNB-440]
          Length = 371

 Score =  198 bits (504), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 118/313 (37%), Positives = 180/313 (57%), Gaps = 14/313 (4%)

Query: 18  GDHVPVLLEKVIALLNPAPGK-------VILDATFGAGGYSRSFCKMGSN--VIALDRDP 68
           G HVPVLLE+ + LL+PA  +       V +DAT G GG++ +         ++ LDRD 
Sbjct: 6   GAHVPVLLERCLELLSPALDRTGQTGRTVYVDATLGLGGHAEAILTAHPRTMLVGLDRDT 65

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGF 125
            A++  +  +  + ++  L  A + +L D +   G   VDG++FDLGVSS+Q+D  DRGF
Sbjct: 66  EALAHARVRLARFADRVHLEHAVYDELPDVLDRIGHPVVDGILFDLGVSSLQLDAPDRGF 125

Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           ++ +  PLDMRM  S G++A +VVN  +  +L R+L + GEEK ASRIA AIV+ R  AP
Sbjct: 126 AYAQDAPLDMRMDQSRGVTAEEVVNSYSHPELARVLRVYGEEKFASRIASAIVRERDRAP 185

Query: 185 FQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
             ++  L+ L+++ +   ++    HPA R+FQALRI VN E+  L   L +A   L   G
Sbjct: 186 ITSSAQLAELVRQAIPAPARRTGGHPAKRTFQALRIEVNRELAALETALPAALDRLAIEG 245

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            ++V+S+HSLEDRL K   A R      +   +        F+ +++   +P + +VA N
Sbjct: 246 RMVVLSYHSLEDRLTKVALADRVRSKGPIDLPVELPGTGPTFRLLSRGAELPGEAEVAVN 305

Query: 304 RRSRSAKLRAGMR 316
            R+ S +LRA  R
Sbjct: 306 PRAASVRLRAAER 318


>gi|263460310|sp|A4TBF6|RSMH_MYCGI RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 317

 Score =  198 bits (504), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 120/304 (39%), Positives = 174/304 (57%), Gaps = 10/304 (3%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCG 74
           HVPVLL++ + LL PA    G  ++DAT GAGG+S  F     G  +I LDRDP A+   
Sbjct: 7   HVPVLLDRCVELLAPALTREGATLVDATLGAGGHSERFLTDFPGLRLIGLDRDPDALRIA 66

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            E +  + ++ +L +  +  + D V D     VD ++FDLGVSSMQ+D  +RGFS+    
Sbjct: 67  GERLAPFADRITLVRTRYDGIADAVRDAAGGSVDAILFDLGVSSMQLDRVERGFSYSTDA 126

Query: 132 PLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM S + ++A+ V+N  + + L R+L   GEEK A RIA  IV+RR   PF TT +
Sbjct: 127 PLDMRMDSGADLTAAQVLNSYDERALARVLREYGEEKFAGRIAAFIVRRRAVTPFTTTGE 186

Query: 191 LSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  L+   +   ++    HPA R+FQALRI VN E+E L   + +A +AL+  G L V++
Sbjct: 187 LVELLYDAIPAPARRTGGHPAKRTFQALRIEVNAELESLRSAIPAALQALRPHGRLAVMA 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           + SLEDR+VK  FA+ +         +    H   F ++T+       E++  N RS   
Sbjct: 247 YQSLEDRIVKTAFAAATASRTPPGLPVELPGHGPEFVALTRGAERADAEEIERNPRSAPV 306

Query: 310 KLRA 313
           +LRA
Sbjct: 307 RLRA 310


>gi|326391684|ref|ZP_08213209.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter ethanolicus
           JW 200]
 gi|325992262|gb|EGD50729.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 308

 Score =  198 bits (504), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 117/305 (38%), Positives = 173/305 (56%), Gaps = 10/305 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77
           H  VLL++ I  LN  P  + +D T G GG+S    K      +IA+DRD  A+   +E 
Sbjct: 5   HKSVLLKETIEYLNIKPEGIYVDGTLGGGGHSEEILKRLTTGKLIAIDRDLDAIKASKER 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVP----DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           +++YK         F  +++ +     DK VDG++ DLGVSS Q++  +RGFS+ K  PL
Sbjct: 65  LKNYK-NVEYINDNFKNIKEILKSLDIDK-VDGILLDLGVSSYQLEEVERGFSYMKDAPL 122

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM   S  SA DVVN+ + ++L R++   GEEK ASRIA  I K R+    +TT  L 
Sbjct: 123 DMRMDKNSPFSAYDVVNKYSQQELERVIREYGEEKWASRIAKFIAKEREKGEIKTTFQLV 182

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  V  S +    HPA R+FQA+RI VN E++ L + +    + L+  G + +++FH
Sbjct: 183 EIIKNAVPASARREGPHPAKRTFQAIRIEVNEELKGLDKAIEDMVEVLRGKGRIAIITFH 242

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+VK  F           +M  +     + + ITKK V+P++E++  N RSRSAKL
Sbjct: 243 SLEDRIVKNTFKKLENPCTCPHNMPCTCGKEPLIKIITKKPVLPSKEEIETNSRSRSAKL 302

Query: 312 RAGMR 316
           R   +
Sbjct: 303 RVAEK 307


>gi|319941799|ref|ZP_08016121.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Sutterella wadsworthensis 3_1_45B]
 gi|319804732|gb|EFW01599.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Sutterella wadsworthensis 3_1_45B]
          Length = 315

 Score =  198 bits (504), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 132/319 (41%), Positives = 183/319 (57%), Gaps = 23/319 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQE 76
           H+PVL  +    L   P  + +D TFG GG+SR   +       +IA DRDP        
Sbjct: 6   HLPVLSREAPEALVARPDGLYVDGTFGRGGHSRLILERLAQQGRLIAFDRDP-EAVAAAA 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++D +  F +  A FS +++ + D G   VDG+  D+GVSS QID   RGFSF+  GPL
Sbjct: 65  AIKDPR--FQIVHAPFSAMKERLGDLGIRQVDGIFLDIGVSSPQIDDPSRGFSFRFEGPL 122

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  S G +A++ + +A+V+++  +L   GEE+ A RIA AIV+ R  AP  TT  L+
Sbjct: 123 DMRMDTSCGETAAEWLARASVEEIAEVLADFGEERFAHRIARAIVEARSRAPITTTGALA 182

Query: 193 SLIQKTVYFSKNNR---IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            L++  V   KN R    HPATR+FQA+RI VN+E++EL   L SA   L   G L V+S
Sbjct: 183 KLVEAAV--PKNRRDAAQHPATRTFQAVRIQVNHELDELKTTLESAGALLAPAGRLAVIS 240

Query: 250 FHSLEDRLVKKFFASR--SGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDVAFNRR 305
           FHSLEDR+VK+FF  R    + +  R  +P+  NA P     I    ++PT+ +   N R
Sbjct: 241 FHSLEDRIVKRFFEKRLHPDRDLDPRLPMPAGFNAQPWFCDVIR---ILPTKSEAESNPR 297

Query: 306 SRSAKLRAGMRTVERSIED 324
           +RS+ LR G RT  R  ED
Sbjct: 298 ARSSVLRVGTRTA-RLWED 315


>gi|256825484|ref|YP_003149444.1| S-adenosyl-methyltransferase MraW [Kytococcus sedentarius DSM
           20547]
 gi|256688877|gb|ACV06679.1| S-adenosyl-methyltransferase MraW [Kytococcus sedentarius DSM
           20547]
          Length = 335

 Score =  198 bits (503), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 120/311 (38%), Positives = 178/311 (57%), Gaps = 15/311 (4%)

Query: 20  HVPVLLEKVIALLNPA----PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73
           HVPV+L +++ LL PA     G V LD T G GG++ +  +    + V+ +DRDP A+  
Sbjct: 15  HVPVMLPRILDLLAPALDGVDGAVHLDGTLGMGGHAEALLERFGHARVVGIDRDPQAIEL 74

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQKS 130
             E +  +  +F     T+ ++   +   GVD    ++FDLGVSS+Q+D   RGFS+ ++
Sbjct: 75  ASERLARFGHRFVAHHGTYDEVGPALDRLGVDSAQSMLFDLGVSSLQLDEVGRGFSYSRN 134

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM+ + G SA+DV+N     DL R+L   GEE+ A +IA A+++ R++ PF  + 
Sbjct: 135 APLDMRMNPTVGQSAADVLNTYGHGDLARVLKEYGEERFAGKIASAVLRERETEPFTDSA 194

Query: 190 DLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L  L+++TV   S+    HPA R+FQALRI VN+E+   A  +  A   L  GG L V+
Sbjct: 195 RLVELLERTVPAASQRTGGHPAKRTFQALRIEVNSELSIWATTVHRALDHLAVGGRLAVL 254

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITKKVVVPTQEDVAFNRRS 306
           S+HSLEDRL K+ FA  +G   +    +P     H    +  T+    P + + A NRRS
Sbjct: 255 SYHSLEDRLTKQAFA--AGATSSAPEGLPVELPEHAPWLRLATRGAEQPDEGERAVNRRS 312

Query: 307 RSAKLRAGMRT 317
            SA+LR   RT
Sbjct: 313 SSARLRVAERT 323


>gi|240948415|ref|ZP_04752793.1| S-adenosyl-methyltransferase MraW [Actinobacillus minor NM305]
 gi|240297241|gb|EER47799.1| S-adenosyl-methyltransferase MraW [Actinobacillus minor NM305]
          Length = 314

 Score =  198 bits (503), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 124/316 (39%), Positives = 180/316 (56%), Gaps = 20/316 (6%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALD 65
           MS  +H     H+ VLL + +  L   P  + +D TFG GG+SR   S       +IA D
Sbjct: 1   MSDTLHK----HITVLLHEAVEGLAIKPNGIYIDGTFGRGGHSRLILSKLNEQGRLIATD 56

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCG 121
           RDP A++    T+ D +  F +    FS +     D      +DG++ DLGVSS Q+D  
Sbjct: 57  RDPRAIAEAH-TITDPR--FQIIHTAFSAIPQVCEDLDLTGKIDGILLDLGVSSPQLDDA 113

Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK-- 178
           +RGFSF + GPLDMRM  S G+SA++ ++Q +++DLT +L   GEE+ A RIA AIV   
Sbjct: 114 ERGFSFMRDGPLDMRMDTSKGLSAAEWLDQVSIEDLTWVLKEFGEERFAKRIATAIVNFN 173

Query: 179 RRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           +  S     T  L+ +I   V F K+   HPATRSFQA+RIF+N+E++EL + L SA   
Sbjct: 174 KTSSQKITRTLQLAQIISDAVPF-KDKHKHPATRSFQAIRIFINSELDELEKALNSALSV 232

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPT 296
           L   G L ++SFHSLEDR+VK+F    S      R +  + ++ +  +      K ++P+
Sbjct: 233 LAPEGRLSIISFHSLEDRMVKQFMKKNSKGKEVPRGLPILEADLNKDIPLKTIGKAIMPS 292

Query: 297 QEDVAFNRRSRSAKLR 312
           + ++  N RSRSA LR
Sbjct: 293 EAEIEANPRSRSAVLR 308


>gi|195107446|ref|XP_001998323.1| GI23693 [Drosophila mojavensis]
 gi|193914917|gb|EDW13784.1| GI23693 [Drosophila mojavensis]
          Length = 362

 Score =  198 bits (503), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 131/331 (39%), Positives = 185/331 (55%), Gaps = 37/331 (11%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77
           HVPVL E  I  L P PG   +D TFGAGG++R        + V ALDRDP A    Q  
Sbjct: 33  HVPVLCETAIEYLQPKPGGKYIDMTFGAGGHTRKLLDSCPETTVYALDRDPVAHQLAQRM 92

Query: 78  MRD--YKEQFSLFQATFSQLQDY-----VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            ++  Y+ +       FS L        VP +  DG++FD G SSMQ D   RGFS    
Sbjct: 93  SQEQNYEGRLIPMLGKFSDLPQLLQALDVPPRSFDGMLFDFGCSSMQFDEAARGFSIAHD 152

Query: 131 GPLDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP-FQT 187
           GPLDMRM C   G+SA+DV+ +    DL RIL + GEEK A +IA AIV+ R +    +T
Sbjct: 153 GPLDMRMDCGRGGVSAADVLARIEEADLARILRVYGEEKAAKKIARAIVEARNALQRIET 212

Query: 188 TQDLSSLIQKTV-YFSKNNRI----HPATRSFQALRIFVNNEIEELAQGLRSA-EKALKA 241
           T+ L+ L+   +    + +++    H AT++FQALRIFVNNE+ E+  G+  A E  L+A
Sbjct: 213 TRQLADLVAAVLGEGHRRDKLQRPSHVATKTFQALRIFVNNELNEINYGMVLAQELLLRA 272

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVM-AVRHMIP--SNAH-----PAVFQS------ 287
            G L+ ++FHSLED +VK+     +G V+  V + +P   + H     P + +S      
Sbjct: 273 QGRLVAITFHSLEDTIVKRHL---NGNVIEGVANPLPLKYSGHDLTHDPELMESFVRSNW 329

Query: 288 --ITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
             + + V++P   ++A N RSRSAKLRA ++
Sbjct: 330 RQLHRHVILPDASEIARNSRSRSAKLRAAVK 360


>gi|307266529|ref|ZP_07548062.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306918448|gb|EFN48689.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 308

 Score =  198 bits (503), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 117/305 (38%), Positives = 173/305 (56%), Gaps = 10/305 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77
           H  VLL++ I  LN  P  + +D T G GG+S    K      +IA+DRD  A+   +E 
Sbjct: 5   HKSVLLKETIEYLNIKPEGIYVDGTLGGGGHSEEILKRLPTGKLIAIDRDLDAIKASKER 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVP----DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           +++YK         F  +++ +     DK VDG++ DLGVSS Q++  +RGFS+ K  PL
Sbjct: 65  LKNYK-NVEYINDNFKNIKEILKSLDIDK-VDGILLDLGVSSYQLEEVERGFSYMKDAPL 122

Query: 134 DMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM   S  SA DVVN+ + ++L R++   GEEK ASRIA  I K R+    +TT  L 
Sbjct: 123 DMRMDKNSPFSAYDVVNKYSQQELERVIREYGEEKWASRIAKFIAKEREKGEIKTTFQLV 182

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  V  S +    HPA R+FQA+RI VN E++ L + +    + L+  G + +++FH
Sbjct: 183 EIIKNAVPASARREGPHPAKRTFQAIRIEVNEELKGLDKAIEDMVEVLRGKGRIAIITFH 242

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+VK  F           +M  +     + + ITKK V+P++E++  N RSRSAKL
Sbjct: 243 SLEDRIVKNTFKKLENPCTCPHNMPCTCGKEPLIKIITKKPVLPSKEEIETNSRSRSAKL 302

Query: 312 RAGMR 316
           R   +
Sbjct: 303 RVAEK 307


>gi|163841237|ref|YP_001625642.1| S-adenosyl-methyltransferase MraW [Renibacterium salmoninarum ATCC
           33209]
 gi|162954713|gb|ABY24228.1| S-adenosyl-methyltransferase [Renibacterium salmoninarum ATCC
           33209]
          Length = 382

 Score =  198 bits (503), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 122/316 (38%), Positives = 183/316 (57%), Gaps = 15/316 (4%)

Query: 20  HVPVLLEKVIALLNPA------PGK--VILDATFGAGGYSRSFCKMGSNV--IALDRDPF 69
           HVPVL ++ + LL PA       G+  V++DAT G GG+S +      N+  I +DRD  
Sbjct: 64  HVPVLRDRCVNLLAPAIEAANLAGRRAVVVDATLGMGGHSEAMLTRFENLHLIGIDRDTQ 123

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFS 126
           A+      ++ ++++  L  A + ++ + + D G   +DGV+ DLGVSS+Q+D  +RGF+
Sbjct: 124 ALDLSGARLKPFEDRTDLVHAVYDEITEVLDDLGFESIDGVLMDLGVSSLQLDEAERGFA 183

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           +    PLDMRM  S G SA+DVVN  +  +L  I+   GEEK A RIA+ IV  R   PF
Sbjct: 184 YSYDAPLDMRMDTSRGQSAADVVNSYSETELVSIIRRWGEEKFAGRIANRIVAARAEKPF 243

Query: 186 QTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
             T +L  +I+K V   +     HPA R+FQALRI VN E+  L + + +A  AL  GG 
Sbjct: 244 AGTGELVEVIRKAVPAAAARTGGHPAKRTFQALRIEVNEELVVLERAVPAAVDALAIGGR 303

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
            +V+S+HSLED++VKKFF++           +  ++     +++TK   VPT+ ++A N 
Sbjct: 304 AVVMSYHSLEDKIVKKFFSTGVTSSAPPGFPVELDSQKPELKTLTKGTEVPTEAEIAENP 363

Query: 305 RSRSAKLRAGMRTVER 320
           R+ SA+LRA  R   R
Sbjct: 364 RAASARLRAVERIRPR 379


>gi|167040640|ref|YP_001663625.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter sp. X514]
 gi|256752962|ref|ZP_05493788.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|300914681|ref|ZP_07131997.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter sp. X561]
 gi|307724085|ref|YP_003903836.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter sp. X513]
 gi|262825863|sp|B0K3H8|RSMH_THEPX RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|166854880|gb|ABY93289.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter sp. X514]
 gi|256748157|gb|EEU61235.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|300889616|gb|EFK84762.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter sp. X561]
 gi|307581146|gb|ADN54545.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter sp. X513]
          Length = 308

 Score =  198 bits (503), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 117/305 (38%), Positives = 173/305 (56%), Gaps = 10/305 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77
           H  VLL++ I  LN  P  + +D T G GG+S    K      +IA+DRD  A+   +E 
Sbjct: 5   HKSVLLKETIEYLNIKPEGIYVDGTLGGGGHSEEILKRLTTGKLIAIDRDLDAIKASKER 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVP----DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           +++YK         F  +++ +     DK VDG++ DLGVSS Q++   RGFS+ K  P+
Sbjct: 65  LKNYK-NVEYINDNFKNIKEILKSLNIDK-VDGILLDLGVSSYQLEEVKRGFSYMKDAPM 122

Query: 134 DMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM   S  SA DVVN+ + ++L R++   GEEK ASRIA  IVK R+    +TT  L 
Sbjct: 123 DMRMDKNSPFSAYDVVNKYSQQELERVIREYGEEKWASRIAKFIVKEREKGEIKTTFQLV 182

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  +  S +    HPA R+FQA+RI VN E++ L + +    + L+  G + +++FH
Sbjct: 183 EIIKNAIPASARREGPHPAKRTFQAIRIEVNEELKGLDKAIEDMVEVLRGKGRIAIITFH 242

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+VK  F           +M  +     V + ITKK V+P++E++  N RSRSAKL
Sbjct: 243 SLEDRIVKNTFKKLENPCTCPPNMPCTCGKKPVVKIITKKPVLPSKEEIETNSRSRSAKL 302

Query: 312 RAGMR 316
           R   +
Sbjct: 303 RVAEK 307


>gi|146310292|ref|YP_001175366.1| S-adenosyl-methyltransferase MraW [Enterobacter sp. 638]
 gi|263447009|sp|A4W6I5|RSMH_ENT38 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|145317168|gb|ABP59315.1| S-adenosyl-methyltransferase MraW [Enterobacter sp. 638]
          Length = 313

 Score =  198 bits (503), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 122/310 (39%), Positives = 184/310 (59%), Gaps = 17/310 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN  P  + +D TFG GG+SR    ++G+   ++A+DRDP A++  + 
Sbjct: 7   HTSVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGAEGRLLAIDRDPQAIAVAK- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           T+ D +  FS     FS L DYV ++     +DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 66  TIDDPR--FSFVHGPFSALADYVSERDLTGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G SA++ +  A   D+  ++   GEE+   RIA  IV+R +  P   T++L
Sbjct: 124 LDMRMDPTRGQSAAEWLLTAEEADIAWVIKTFGEERFGKRIARGIVERNRIEPMTRTKEL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++       K+   HPATR+FQA+RI+VN+E+EE+   L+S+   L  GG L ++SFH
Sbjct: 184 AEVVTAATPV-KDKFKHPATRTFQAVRIWVNSELEEIELALKSSLGVLAPGGRLSIISFH 242

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHP--AVFQSITKKVVVPTQEDVAFNRRSR 307
           SLEDR+VK+F    SR  +V A   M           +  +  K ++P +E+VA N R+R
Sbjct: 243 SLEDRIVKRFMREQSRGPQVPAGLPMTEDQLRKLGGRYLRVLGK-MMPGEEEVAENPRAR 301

Query: 308 SAKLRAGMRT 317
           S+ LR   RT
Sbjct: 302 SSVLRIAERT 311


>gi|94987539|ref|YP_595472.1| S-adenosyl-methyltransferase MraW [Lawsonia intracellularis
           PHE/MN1-00]
 gi|172046236|sp|Q1MPC6|RSMH_LAWIP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|94731788|emb|CAJ55151.1| predicted S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 312

 Score =  198 bits (503), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 115/310 (37%), Positives = 184/310 (59%), Gaps = 11/310 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H PV+LE+ IA+L P      LD T G GG+S +  +    G+ +  LD+D  A++  + 
Sbjct: 2   HQPVMLEETIAMLKPHAKGRYLDGTVGLGGHSFAILQSAGDGAELCGLDQDKKALAIAEM 61

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           T++ +K++  L    +S     +   G   +DG + D+GVSS+Q+D  +RGFSF   GPL
Sbjct: 62  TLKPFKKRVHLVHTKYSSFPLILKALGWKLLDGALIDIGVSSLQLDNAERGFSFLYDGPL 121

Query: 134 DMRMS--CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           DMRM    +  S  ++VN++  + L  I+   GEE QA+RIA AIV++R++ P  TT++L
Sbjct: 122 DMRMDQDANNNSLFEIVNKSRQEYLKDIISRYGEEPQANRIAKAIVQKRRTKPITTTKEL 181

Query: 192 SSLIQKT--VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           + LI++     +   +R HPAT++FQA RI VN+E+ EL + L      +  GG + V+S
Sbjct: 182 ADLIEQAYPAAWRAKSRHHPATKTFQAFRIVVNSELNELEKFLNMIMGWIAPGGRVAVIS 241

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK++  S +   +   ++ +    H      ITKK + P++++++ N RSRS
Sbjct: 242 FHSLEDRIVKQYMKSWTRSCICPPYVPVCKCFHKPEAILITKKPIRPSEKEISENIRSRS 301

Query: 309 AKLRAGMRTV 318
           AKLR   + +
Sbjct: 302 AKLRVAEKVL 311


>gi|251797883|ref|YP_003012614.1| S-adenosyl-methyltransferase MraW [Paenibacillus sp. JDR-2]
 gi|262824736|sp|C6D563|RSMH_PAESJ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|247545509|gb|ACT02528.1| S-adenosyl-methyltransferase MraW [Paenibacillus sp. JDR-2]
          Length = 316

 Score =  198 bits (503), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 119/315 (37%), Positives = 178/315 (56%), Gaps = 29/315 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H+ VLLE+ +  L   PG + +D T G  G+S         G  +IA D+D  A+   + 
Sbjct: 4   HITVLLEEAVDGLAIKPGGIYVDCTLGGAGHSERIVSQLSGGGRLIAFDQDDAALDNARV 63

Query: 77  TMRDYKEQFSLFQATFSQLQ-----------DYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125
            +  Y ++ +L ++ F  L+           D VP   VDG++FDLGVSS Q+D  +RGF
Sbjct: 64  RLAPYMDRVTLVKSNFRYLEEMLLTCDVPTVDGVPQ--VDGILFDLGVSSPQLDEAERGF 121

Query: 126 SFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           S+    PLDMRM   G ++A D+VN    ++++RIL + GEEK A  IA  IV+ R++AP
Sbjct: 122 SYNHDAPLDMRMDQGGALTAYDIVNSWEEREISRILHVYGEEKFARSIARKIVQARENAP 181

Query: 185 FQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
            +TT +L+ L++  +   ++    HPA RSFQALRI VN+E+      L  A K ++ GG
Sbjct: 182 IETTGELAELVKTGIPAAARRTGGHPAKRSFQALRIAVNDELGAEEDALEEAVKCIRPGG 241

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV------FQSITKKVVVPTQ 297
            + V++FHSLEDR+ K+ FAS   K        P +    V       + + +K +VPT+
Sbjct: 242 RISVITFHSLEDRICKQLFASYVEKCTC-----PPDFPKCVCGGTGKLRLVNRKPIVPTE 296

Query: 298 EDVAFNRRSRSAKLR 312
           +++  N RSRSAKLR
Sbjct: 297 QELEVNPRSRSAKLR 311


>gi|119773487|ref|YP_926227.1| S-adenosyl-methyltransferase MraW [Shewanella amazonensis SB2B]
 gi|262826482|sp|A1S2F1|RSMH_SHEAM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|119765987|gb|ABL98557.1| methyltransferase [Shewanella amazonensis SB2B]
          Length = 313

 Score =  198 bits (503), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 117/308 (37%), Positives = 179/308 (58%), Gaps = 15/308 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H+ VLL + +  LN     + +D TFG GG+SR    ++G +  +IA+DRDP A+   ++
Sbjct: 7   HLSVLLAETVDGLNIRADGIYIDGTFGRGGHSREVLSRLGVDGRLIAIDRDPQAIKAAEQ 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              D +  F +    F QL +YV + G    +DGV+ DLGVSS Q+D  +RGFSF + GP
Sbjct: 67  FANDSR--FQIVHGGFGQLANYVEELGLVGKIDGVLLDLGVSSPQLDDAERGFSFLRDGP 124

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G +A+  + +A ++D+  +    GEE+ A  IA  I   R+  PF  T+ L
Sbjct: 125 LDMRMDNSQGETAAQWLARAEIEDMAWVFKTYGEERNARHIARCIAADREKTPFTRTKQL 184

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI +     + N+ HPATR FQA+RI++N+E+E++ Q L  A K L   G L ++SFH
Sbjct: 185 ADLIARVAKSKERNK-HPATRVFQAIRIYINSELEQIDQALEGALKVLAPHGRLSIISFH 243

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSI--TKKVVVPTQEDVAFNRRSRS 308
           SLEDR+VK+F   R  +   + H +P + A     +++    K + P+  ++  N R+RS
Sbjct: 244 SLEDRIVKRFI-RRHSQGEELPHGLPVTEAQLNKSRTLMPVGKAMKPSDVEIEQNARARS 302

Query: 309 AKLRAGMR 316
           + LR   R
Sbjct: 303 SVLRVAER 310


>gi|290476461|ref|YP_003469366.1| S-adenosyl-dependent methyl transferase [Xenorhabdus bovienii
           SS-2004]
 gi|289175799|emb|CBJ82602.1| S-adenosyl-dependent methyl transferase [Xenorhabdus bovienii
           SS-2004]
          Length = 314

 Score =  198 bits (503), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 121/306 (39%), Positives = 182/306 (59%), Gaps = 19/306 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN     + +D TFG GG+SR    ++G++  +IA+DRDP A+   + 
Sbjct: 8   HTSVLLDEAVNGLNIRENGIYIDGTFGRGGHSRLILSQLGADGRLIAIDRDPQAIEAAKA 67

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  +FS+    FS+L  Y+ + G    +DGV+ DLGVSS Q+D  +RGFSF + GP
Sbjct: 68  IT---DPRFSITHGPFSELATYIEEAGLVGKIDGVLLDLGVSSPQLDDPERGFSFMRDGP 124

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G SA++ + +A   D+  +L   GEE+ A RIA AIV R Q      T++L
Sbjct: 125 LDMRMDPTRGQSATEWLMKAEADDIAWVLKTFGEERFAKRIARAIVARNQEGQITRTREL 184

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI +     + ++ HPATRSFQA+RI++N+E+EE+ + L  A + L   G L V+SFH
Sbjct: 185 AELIAQASPVKEKHK-HPATRSFQAIRIYINSELEEIERALNGALQVLAPQGRLSVISFH 243

Query: 252 SLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306
           SLEDR+VK+F    SR  +V A   +  +          +SI K  + P++++V  N R+
Sbjct: 244 SLEDRIVKRFIRQHSRGPQVPAGLPLTETQLKAQGGRSLKSIGK--LKPSEDEVVINPRA 301

Query: 307 RSAKLR 312
           RS+ LR
Sbjct: 302 RSSVLR 307


>gi|299533126|ref|ZP_07046511.1| S-adenosyl-methyltransferase MraW [Comamonas testosteroni S44]
 gi|298718903|gb|EFI59875.1| S-adenosyl-methyltransferase MraW [Comamonas testosteroni S44]
          Length = 309

 Score =  198 bits (503), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 130/307 (42%), Positives = 182/307 (59%), Gaps = 17/307 (5%)

Query: 20  HVPVLL-EKVIALLNPA---PGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVS 72
           H+ VLL E V ALL  A   P    +DATFG GG+SR    ++G +  +IA D+DP A++
Sbjct: 7   HITVLLDEAVDALLGGAAKPPAGQWVDATFGRGGHSRLILQRLGPDGRLIAFDKDPDAIA 66

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              E  R    +FS+    F  L + +P+  V GV+ DLGVSS QID  DRGFSF+  GP
Sbjct: 67  ---EAARITDARFSIRHEGFRHLGE-LPEGSVQGVLMDLGVSSPQIDNPDRGFSFRFDGP 122

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQTTQD 190
           LDMRM  + G S ++ +  A V+ +  ++   GEE+ A  IA AIV RR+S  P +TT +
Sbjct: 123 LDMRMDTTRGQSVAEWLEDAEVQQIAEVIRDYGEERFAGPIAKAIVARRESQGPLRTTAE 182

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ L+   V   +  + +PATR+FQALRIF+N E++EL Q L ++ + L  GG L V+SF
Sbjct: 183 LAQLVAGAVKTREAGQ-NPATRTFQALRIFINAELQELEQALEASLRVLAPGGRLAVISF 241

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDR+VK+F A  S ++   R      A P   +    + + P+  +V  N RSRSA 
Sbjct: 242 HSLEDRIVKQFIAKHSKEIYDRRAPF---APPTPMRLKALERIKPSAAEVDANPRSRSAV 298

Query: 311 LRAGMRT 317
           +R   RT
Sbjct: 299 MRVAERT 305


>gi|258514333|ref|YP_003190555.1| S-adenosyl-methyltransferase MraW [Desulfotomaculum acetoxidans DSM
           771]
 gi|257778038|gb|ACV61932.1| S-adenosyl-methyltransferase MraW [Desulfotomaculum acetoxidans DSM
           771]
          Length = 311

 Score =  198 bits (503), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 122/306 (39%), Positives = 175/306 (57%), Gaps = 9/306 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H PV+L +VI  LN  PG + +D T G  G+S +  +       +I LD+DP A++   E
Sbjct: 5   HKPVMLAEVIDGLNIRPGGIYVDCTLGGAGHSSAIAQKLDGRGLLIGLDQDPEALAAASE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  Y          FS++   +     + VDG+++DLGVSS Q+D   RGFS+    PL
Sbjct: 65  RLAVYGALVKTVGRNFSEIASVLSSLNIESVDGILYDLGVSSYQLDNPSRGFSYMHEAPL 124

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  SGI+A D+VN  + + L  I+   GEE+ ASRIA  I++ R+     TT  L 
Sbjct: 125 DMRMNPQSGITAGDLVNSLSQEKLAEIIQSYGEERWASRIAGFIIEERRHKNICTTGQLV 184

Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+K +   ++ +  HPA R+FQALRI VN E+E L Q LR   K L+ GG + V++FH
Sbjct: 185 QIIKKAIPAGARRDGPHPAKRTFQALRIAVNRELEILQQALRDGIKFLRTGGRICVITFH 244

Query: 252 SLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDRLVK+ F S + G +   R  +         + IT K +VPT+ ++  N R+RSAK
Sbjct: 245 SLEDRLVKEVFKSVAKGCICPPRLPVCLCGKQKELKIITGKPLVPTETELKDNPRARSAK 304

Query: 311 LRAGMR 316
           LR   R
Sbjct: 305 LRIAER 310


>gi|225850230|ref|YP_002730464.1| S-adenosyl-methyltransferase MraW [Persephonella marina EX-H1]
 gi|262824804|sp|C0QP68|RSMH_PERMH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|225646628|gb|ACO04814.1| S-adenosyl-methyltransferase MraW [Persephonella marina EX-H1]
          Length = 293

 Score =  198 bits (503), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 119/306 (38%), Positives = 176/306 (57%), Gaps = 24/306 (7%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76
           +H PVL  +V++      G+ I+DAT G GG+S    K    + +I +D+D +A+   +E
Sbjct: 3   EHYPVLHREVLSFFKNIKGRYIVDATVGGGGHSFLLLKNLPETFLIGIDKDDYALEKAEE 62

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  +K +F L + +F  +   V     K V GV+FDLGVS+ Q+   +RGFSFQ+  PL
Sbjct: 63  KLSPFKGRFRLIKGSFKDIDTIVHSMDIKYVSGVLFDLGVSTFQLKT-ERGFSFQREEPL 121

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM      +A DVVN+    +L +I+   GEEK A RIA AIV+ R+    +TT++L+
Sbjct: 122 DMRMDRTQKKTAFDVVNRYTKIELEKIIKDYGEEKFARRIASAIVEARKKKRIETTKELA 181

Query: 193 SLIQKTVYFS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
            ++   VY    +  RIHPAT++FQA+RI VNNE+EE+ +G+      L+ GG++ V+SF
Sbjct: 182 QIVY-NVYPPPLRRGRIHPATKTFQAIRIEVNNELEEIKEGVNKGIDLLEKGGIIAVISF 240

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDR+VK  +  R                    + +TKK + P  E++  N  SRSAK
Sbjct: 241 HSLEDRIVKNIYRERK--------------RLKDIEILTKKPITPGTEEIRENPPSRSAK 286

Query: 311 LRAGMR 316
           LR   R
Sbjct: 287 LRVAKR 292


>gi|263506479|sp|B0U504|RSMH_XYLFM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 313

 Score =  198 bits (503), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 116/301 (38%), Positives = 170/301 (56%), Gaps = 10/301 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HVPVL  + +  L        LD TFG GG++R   +    G  ++ +D+DP A++  + 
Sbjct: 3   HVPVLYTQAMEGLRVVENGTYLDGTFGRGGHARGVLQQLGPGGRLLVMDKDPEAIAMAER 62

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
                  +  +   +F+ L      + +DGV+FDLGVSS Q+D  +RGFSF K GPLDMR
Sbjct: 63  VF-SCDPRVVIRHGSFALLAQLAAPQSLDGVLFDLGVSSPQLDVPERGFSFAKDGPLDMR 121

Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M    G SA+  + + + +++  +L   GEEKQ+ RIA AIV  R + P   T  L+ LI
Sbjct: 122 MDPEMGESAAQWLARVSEREIAEVLWTYGEEKQSRRIARAIVAYRANQPLLRTVQLAELI 181

Query: 196 QKTVYFSKN----NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
              +  +K+    +RIHPATRSFQ +RI VN E+ +L  GL +A  AL+ GG L+V+SFH
Sbjct: 182 ASVMLRTKSGACKSRIHPATRSFQGIRIHVNRELVDLEVGLEAALAALRPGGRLVVISFH 241

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+VK+F  SR  KV      +P          +  + +   ++++  N R+RSA L
Sbjct: 242 SLEDRIVKQFI-SRHAKVPPTNRRLPEVQTFVPLLRMIGRAIKADEDELEVNPRARSAVL 300

Query: 312 R 312
           R
Sbjct: 301 R 301


>gi|327484905|gb|AEA79312.1| rRNA small subunit methyltransferase H [Vibrio cholerae LMA3894-4]
          Length = 316

 Score =  198 bits (503), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 123/309 (39%), Positives = 175/309 (56%), Gaps = 20/309 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H+ VLL + I  L   P  + +D TFG GG+SR+   ++G    + ++DRDP A++  Q+
Sbjct: 7   HISVLLNESIEGLAIKPDGIYIDGTFGRGGHSRTILAQLGPEGRLYSIDRDPQAIAEAQK 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  +F++    FS + +Y         VDGV+FDLGVSS Q+D  +RGFSF K GP
Sbjct: 67  I---DDPRFTIIHGPFSGIAEYAQRYDLVGKVDGVLFDLGVSSPQLDDAERGFSFMKDGP 123

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---PFQTT 188
           LDMRM   SG+  S  + QA++ D+T ++   GE+K A RIA AIV+ R++    P   T
Sbjct: 124 LDMRMDPTSGMPVSAWLAQADLDDITWVIREFGEDKHARRIAKAIVEYRENELNEPLTRT 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ LI      S   + HPATR+FQA RI++N+E+EE+   LR A   L   G L V+
Sbjct: 184 SQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALRGASDILAPQGRLSVI 243

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSN-----AHPAVFQSITKKVVVPTQEDVAFN 303
           SFHSLEDR+VK+F    S +   V H +P       A  +       K + P+ ++V  N
Sbjct: 244 SFHSLEDRMVKRFMRKES-QGPEVPHGLPLTQEQIRALGSAKMKTVGKALKPSDQEVELN 302

Query: 304 RRSRSAKLR 312
            RSRS+ LR
Sbjct: 303 PRSRSSVLR 311


>gi|223041547|ref|ZP_03611748.1| S-adenosyl-methyltransferase MraW [Actinobacillus minor 202]
 gi|223017642|gb|EEF16052.1| S-adenosyl-methyltransferase MraW [Actinobacillus minor 202]
          Length = 314

 Score =  198 bits (503), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 124/316 (39%), Positives = 183/316 (57%), Gaps = 20/316 (6%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALD 65
           MS  +H     H+ VLL + +  L   P  + +D TFG GG+SR   S       +IA D
Sbjct: 1   MSDTLHK----HITVLLHEAVEGLAIKPNGIYIDGTFGRGGHSRLILSKLNEQGRLIATD 56

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCG 121
           RDP A++    T+ D +  F +    FS +     D G    +DG++ DLGVSS Q+D  
Sbjct: 57  RDPRAIAEAH-TITDPR--FQIVHTAFSAIPQVCEDLGLIGKIDGILLDLGVSSPQLDDA 113

Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF + GPLDMRM  S G+SA++ ++Q +V+DL  +L   GEE+ A RIA AIV   
Sbjct: 114 ERGFSFMRDGPLDMRMDTSKGLSAAEWLDQVSVEDLAWVLKEFGEERFAKRIATAIVNFN 173

Query: 181 QSAPFQTTQ--DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           +++  + T+   L+ +I   V F K+   HPATRSFQA+RIF+N+E++EL + L SA   
Sbjct: 174 KTSGQKITRTLQLAQIISDAVPF-KDKHKHPATRSFQAIRIFINSELDELEKALNSALSV 232

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPT 296
           L   G L ++SFHSLEDR+VK+F    S      R +  + ++ +  +      K ++P+
Sbjct: 233 LAPEGRLSIISFHSLEDRMVKQFMKKNSKGKEVPRGLPILEADLNKDIPLKTIGKAIMPS 292

Query: 297 QEDVAFNRRSRSAKLR 312
           + ++  N RSRSA LR
Sbjct: 293 EAEIEANPRSRSAVLR 308


>gi|319778491|ref|YP_004129404.1| rRNA small subunit methyltransferase H [Taylorella equigenitalis
           MCE9]
 gi|317108515|gb|ADU91261.1| rRNA small subunit methyltransferase H [Taylorella equigenitalis
           MCE9]
          Length = 288

 Score =  198 bits (503), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 116/288 (40%), Positives = 173/288 (60%), Gaps = 19/288 (6%)

Query: 41  LDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD 97
           +D TFG GG+SR   S     S ++  D+DP A+    E+++    +  +    FS + D
Sbjct: 3   VDGTFGRGGHSRYLLSLLDKNSKLVVFDKDPMAIEAA-ESLKKEDGRVLVVHGAFSTMSD 61

Query: 98  YVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANV 153
            + D G   VDG+  DLG+SS QID G RGFSF + GPLDMRM  S G++A++ +  A+V
Sbjct: 62  VLSDFGITKVDGITMDLGISSPQIDDGTRGFSFMRDGPLDMRMDNSKGLTAAEWLASADV 121

Query: 154 KDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRS 213
           + + +++   GEE+ A +IA AI  RR+  P +TT +L+ LI   V   +  + HPATR+
Sbjct: 122 ELIAKVIKEYGEERFAFQIAKAIASRREHNPIRTTHELAELIAANVRTREKGQ-HPATRT 180

Query: 214 FQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKV---- 269
           FQA+RI++N E+EEL++ L SA + LK GG L V+SFHSLEDR+VK+F A  S       
Sbjct: 181 FQAIRIYINEELEELSRSLTSAIELLKVGGRLSVISFHSLEDRIVKQFIAKESNPASEFA 240

Query: 270 -MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
            + +R +   +      +S+ K  +  T++++  N RSRSA LR   R
Sbjct: 241 RLPIREV---DMPKGNLKSLGK--LTATEDEILKNPRSRSAILRVAER 283


>gi|149190159|ref|ZP_01868435.1| S-adenosyl-methyltransferase MraW [Vibrio shilonii AK1]
 gi|148836048|gb|EDL53009.1| S-adenosyl-methyltransferase MraW [Vibrio shilonii AK1]
          Length = 316

 Score =  198 bits (503), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 125/310 (40%), Positives = 174/310 (56%), Gaps = 22/310 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H+ VLL + I  L   P  + +D TFG GG+SR    ++G N  + ++DRDP A+   +E
Sbjct: 7   HISVLLHESIDGLAIKPDGIYIDGTFGRGGHSRQILSQLGENGRLYSIDRDPQAI---EE 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +    +F++    FS + +Y         VDGV+ DLGVSS Q+D  +RGFSF K GP
Sbjct: 64  AGKIDDPRFTIIHGPFSGMAEYAERYDLVGKVDGVLLDLGVSSPQLDDAERGFSFMKDGP 123

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---PFQTT 188
           LDMRM   SG+  S+ + QA + D+T ++   GE+K A RIA AIV  R+     P   T
Sbjct: 124 LDMRMDPTSGMPVSEWLAQAELDDITWVIREFGEDKHARRIAKAIVAHREDEEKEPLTRT 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ LI      S   + HPATRSFQA RI++N+E+EE+   L+ A   L   G L V+
Sbjct: 184 GQLAKLISDAAPKSFKEKKHPATRSFQAFRIYINSELEEIDTALKGAASILAPEGRLSVI 243

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH------PAVFQSITKKVVVPTQEDVAF 302
           SFHSLEDR+VK+F    S +   V H IP           A  ++I  K + P+ ++V  
Sbjct: 244 SFHSLEDRMVKRFMRKES-RGPQVPHGIPMTEDQIRALGSANLKTIG-KALKPSDQEVEM 301

Query: 303 NRRSRSAKLR 312
           N RSRS+ LR
Sbjct: 302 NTRSRSSVLR 311


>gi|153802806|ref|ZP_01957392.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
 gi|254226626|ref|ZP_04920206.1| conserved hypothetical protein [Vibrio cholerae V51]
 gi|124121671|gb|EAY40414.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
 gi|125620845|gb|EAZ49199.1| conserved hypothetical protein [Vibrio cholerae V51]
          Length = 316

 Score =  197 bits (502), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 123/309 (39%), Positives = 175/309 (56%), Gaps = 20/309 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H+ VLL + I  L   P  + +D TFG GG+SR+   ++G    + ++DRDP A++  Q+
Sbjct: 7   HISVLLNESIEGLAIKPDGIYIDGTFGRGGHSRTILAQLGPQGRLYSIDRDPQAIAEAQK 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  +F++    FS + +Y         VDGV+FDLGVSS Q+D  +RGFSF K GP
Sbjct: 67  I---DDPRFTIIHGPFSGIAEYAQRYDLVGKVDGVLFDLGVSSPQLDDAERGFSFMKDGP 123

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---PFQTT 188
           LDMRM   SG+  S  + QA++ D+T ++   GE+K A RIA AIV+ R++    P   T
Sbjct: 124 LDMRMDPTSGMPVSAWLAQADLDDITWVIREFGEDKHARRIAKAIVEYRENELNEPLTRT 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ LI      S   + HPATR+FQA RI++N+E+EE+   LR A   L   G L V+
Sbjct: 184 SQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALRGASDILAPQGRLSVI 243

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSN-----AHPAVFQSITKKVVVPTQEDVAFN 303
           SFHSLEDR+VK+F    S +   V H +P       A  +       K + P+ ++V  N
Sbjct: 244 SFHSLEDRMVKRFMRKES-QGPEVPHGLPLTQEQIRALGSAKMKTVGKALKPSDQEVELN 302

Query: 304 RRSRSAKLR 312
            RSRS+ LR
Sbjct: 303 PRSRSSVLR 311


>gi|167037220|ref|YP_001664798.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320115639|ref|YP_004185798.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|262825860|sp|B0K8J9|RSMH_THEP3 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|166856054|gb|ABY94462.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319928730|gb|ADV79415.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 308

 Score =  197 bits (502), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 118/305 (38%), Positives = 173/305 (56%), Gaps = 10/305 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77
           H  VLL++ I  LN  P  + +D T G GG+S    K      +IA+DRD  A+   +E 
Sbjct: 5   HKSVLLKETIEYLNIKPEGIYVDGTLGGGGHSEEILKRLTTGKLIAIDRDLDAIKASKER 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVP----DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           +++YK         F  +++ +     DK VDG++ DLGVSS Q++   RGFS+ K  P+
Sbjct: 65  LKNYK-NAEYINDNFKNIKEILKSLNIDK-VDGILLDLGVSSYQLEEVKRGFSYMKDAPM 122

Query: 134 DMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM   S  SA DVVN+ + ++L R++   GEEK ASRIA  IVK R+    +TT  L 
Sbjct: 123 DMRMDKNSPFSAYDVVNKYSQQELERVIREYGEEKWASRIAKFIVKEREKGEIKTTFQLV 182

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  V  S +    HPA R+FQA+RI VN E++ L + +    + L+  G + +++FH
Sbjct: 183 EIIKNAVPASARREGPHPAKRTFQAIRIEVNEELKGLDKAIEDMVEVLRGKGRIAIITFH 242

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+VK  F           +M  +     V + ITKK V+P++E++  N RSRSAKL
Sbjct: 243 SLEDRIVKNTFKKLENPCTCPPNMPCTCGKKPVVKIITKKPVLPSKEEIETNSRSRSAKL 302

Query: 312 RAGMR 316
           R   +
Sbjct: 303 RVAEK 307


>gi|145600350|ref|YP_001164426.1| S-adenosyl-methyltransferase MraW [Yersinia pestis Pestoides F]
 gi|263504690|sp|A4TQ91|RSMH_YERPP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|145212046|gb|ABP41453.1| hypothetical protein YPDSF_3095 [Yersinia pestis Pestoides F]
          Length = 318

 Score =  197 bits (502), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 123/313 (39%), Positives = 180/313 (57%), Gaps = 21/313 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN     + +D TFG GG+SR    ++G    +IA+DRDP A+   ++
Sbjct: 14  HTSVLLDEAVKGLNIRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDRDPEAIEAAKQ 73

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  +FS+    FS L  YV D      +DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 74  IT---DPRFSIVHGPFSDLAHYVRDLDLVGRIDGILLDLGVSSPQLDDAERGFSFMRDGP 130

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G+SA++ + +A+  D+  +L   GEE+ A R+A AIV+R  + P   T++L
Sbjct: 131 LDMRMDPSRGLSAAEWLMKASADDIAWVLKTFGEERFAKRLAKAIVERNLTQPMTRTKEL 190

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI     F      HPATRSFQA+RI++N+E+EE+ + L  A + L   G L V+SFH
Sbjct: 191 ADLIANASPFRDK---HPATRSFQAIRIYINSELEEIERALDGAHEVLAPEGRLSVISFH 247

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306
           SLEDR+VK F    SR  +V A   +  +          +S+ K  ++P   ++A N R+
Sbjct: 248 SLEDRIVKNFIRHHSRGPQVPAGLPLTEAQLRSMGGRTLKSVGK--MMPGDAEIAENPRA 305

Query: 307 RSAKLRAGMRTVE 319
           RS+ LR   R  E
Sbjct: 306 RSSVLRFAERIGE 318


>gi|71275129|ref|ZP_00651416.1| methyltransferase [Xylella fastidiosa Dixon]
 gi|71900702|ref|ZP_00682825.1| methyltransferase [Xylella fastidiosa Ann-1]
 gi|170731118|ref|YP_001776551.1| S-adenosyl-methyltransferase MraW [Xylella fastidiosa M12]
 gi|71163938|gb|EAO13653.1| methyltransferase [Xylella fastidiosa Dixon]
 gi|71729523|gb|EAO31631.1| methyltransferase [Xylella fastidiosa Ann-1]
 gi|167965911|gb|ACA12921.1| S-adenosyl-methyltransferase [Xylella fastidiosa M12]
          Length = 340

 Score =  197 bits (502), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 117/306 (38%), Positives = 171/306 (55%), Gaps = 10/306 (3%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAV 71
           H    HVPVL  + +  L        LD TFG GG++R   +    G  ++ +D+DP A+
Sbjct: 25  HLSMTHVPVLYTQAMEGLRVVENGTYLDGTFGRGGHARGVLQQLGPGGRLLVMDKDPEAI 84

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +  +        +  +   +F+ L      + +DGV+FDLGVSS Q+D  +RGFSF K G
Sbjct: 85  AMAERVF-SCDPRVVIRHGSFALLAQLAAPQSLDGVLFDLGVSSPQLDVPERGFSFAKDG 143

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM    G SA+  + + + +++  +L   GEEKQ+ RIA AIV  R + P   T  
Sbjct: 144 PLDMRMDPEMGESAAQWLARVSEREIAEVLWTYGEEKQSRRIARAIVAYRANQPLLRTVQ 203

Query: 191 LSSLIQKTVYFSKN----NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           L+ LI   +  +K+    +RIHPATRSFQ +RI VN E+ +L  GL +A  AL+ GG L+
Sbjct: 204 LAELIASVMLRTKSGACKSRIHPATRSFQGIRIHVNRELVDLEVGLEAALAALRPGGRLV 263

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+SFHSLEDR+VK+F  SR  KV      +P          +  + +   ++++  N R+
Sbjct: 264 VISFHSLEDRIVKQFI-SRHAKVPPTNRRLPEVQTFVPLLRMIGRAIKADEDELEVNPRA 322

Query: 307 RSAKLR 312
           RSA LR
Sbjct: 323 RSAVLR 328


>gi|15837392|ref|NP_298080.1| S-adenosyl-methyltransferase MraW [Xylella fastidiosa 9a5c]
 gi|20139246|sp|Q9PF88|RSMH_XYLFA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|9105686|gb|AAF83600.1|AE003919_11 conserved hypothetical protein [Xylella fastidiosa 9a5c]
          Length = 313

 Score =  197 bits (502), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 116/301 (38%), Positives = 171/301 (56%), Gaps = 10/301 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HVPVL  + +  L        LD TFG GG++R   ++   G  ++ +D+DP A++  + 
Sbjct: 3   HVPVLYTQAMEGLRVVENGTYLDGTFGRGGHARGVLQLLGPGGRLLVMDKDPEAIAMAER 62

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
                  +  +   +F+ L      + +DGV+FDLGVSS Q+D  +RGFSF K GPLDMR
Sbjct: 63  AF-SCDPRVVIRHGSFALLAQLAAPQSLDGVLFDLGVSSPQLDVPERGFSFVKDGPLDMR 121

Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M    G SA+  + + + +++  +L   GEEKQ+ RIA AIV  R + P   T  L+ LI
Sbjct: 122 MDPEMGESAAQWLARVSEREIADVLWTYGEEKQSRRIARAIVAYRANQPLLRTVQLAELI 181

Query: 196 QKTVYFSKN----NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
              +  +K+    +RIHPATRSFQ +RI VN E+ +L  GL +A  AL+ GG L+V+SFH
Sbjct: 182 ASVMLRTKSGACKSRIHPATRSFQGIRIHVNRELVDLEVGLEAALAALRPGGRLVVISFH 241

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+VK+F  SR  KV      +P          +  + +   ++++  N R+RSA L
Sbjct: 242 SLEDRIVKQFI-SRHAKVPPTNRRLPEVQTFVPLLRMIGRAIKADEDELEVNPRARSAVL 300

Query: 312 R 312
           R
Sbjct: 301 R 301


>gi|121728362|ref|ZP_01681391.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|147675217|ref|YP_001217911.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae O395]
 gi|153214084|ref|ZP_01949218.1| conserved hypothetical protein [Vibrio cholerae 1587]
 gi|153826882|ref|ZP_01979549.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
 gi|153830362|ref|ZP_01983029.1| conserved hypothetical protein [Vibrio cholerae 623-39]
 gi|229521240|ref|ZP_04410660.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae TM 11079-80]
 gi|229524395|ref|ZP_04413800.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae bv. albensis
           VL426]
 gi|229528604|ref|ZP_04417994.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae 12129(1)]
 gi|262168390|ref|ZP_06036087.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae RC27]
 gi|262190392|ref|ZP_06048652.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae CT 5369-93]
 gi|297581036|ref|ZP_06942961.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae RC385]
 gi|121629353|gb|EAX61784.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|124115510|gb|EAY34330.1| conserved hypothetical protein [Vibrio cholerae 1587]
 gi|146317100|gb|ABQ21639.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|148874169|gb|EDL72304.1| conserved hypothetical protein [Vibrio cholerae 623-39]
 gi|149739298|gb|EDM53554.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
 gi|227014303|gb|ACP10513.1| S-adenosyl-methyltransferase mraW [Vibrio cholerae O395]
 gi|229332378|gb|EEN97864.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae 12129(1)]
 gi|229337976|gb|EEO02993.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae bv. albensis
           VL426]
 gi|229341772|gb|EEO06774.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae TM 11079-80]
 gi|262023282|gb|EEY41986.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae RC27]
 gi|262033732|gb|EEY52212.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae CT 5369-93]
 gi|297534862|gb|EFH73698.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae RC385]
          Length = 316

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 123/309 (39%), Positives = 175/309 (56%), Gaps = 20/309 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H+ VLL + I  L   P  + +D TFG GG+SR+   ++G    + ++DRDP A++  Q+
Sbjct: 7   HISVLLNESIEGLAIKPDGIYIDGTFGRGGHSRTILAQLGPEGRLYSIDRDPQAIAEAQK 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  +F++    FS + +Y         VDGV+FDLGVSS Q+D  +RGFSF K GP
Sbjct: 67  I---DDPRFTIVHGPFSGIAEYAQRYDLVGKVDGVLFDLGVSSPQLDDAERGFSFMKDGP 123

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---PFQTT 188
           LDMRM   SG+  S  + QA++ D+T ++   GE+K A RIA AIV+ R++    P   T
Sbjct: 124 LDMRMDPTSGMPVSAWLAQADLDDITWVIREFGEDKHARRIAKAIVEYRENELNEPLTRT 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ LI      S   + HPATR+FQA RI++N+E+EE+   LR A   L   G L V+
Sbjct: 184 SQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALRGASDILAPQGRLSVI 243

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSN-----AHPAVFQSITKKVVVPTQEDVAFN 303
           SFHSLEDR+VK+F    S +   V H +P       A  +       K + P+ ++V  N
Sbjct: 244 SFHSLEDRMVKRFMRKES-QGPEVPHGLPLTQEQIRALGSAKMKTVGKALKPSDQEVELN 302

Query: 304 RRSRSAKLR 312
            RSRS+ LR
Sbjct: 303 PRSRSSVLR 311


>gi|194741008|ref|XP_001952981.1| GF17544 [Drosophila ananassae]
 gi|190626040|gb|EDV41564.1| GF17544 [Drosophila ananassae]
          Length = 361

 Score =  197 bits (501), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 126/331 (38%), Positives = 188/331 (56%), Gaps = 37/331 (11%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77
           HVPVL +  I  L P PG   +D TFGAGG++R   +    + V ALDRDP A    +E 
Sbjct: 32  HVPVLCDTAIEHLQPLPGGTYIDMTFGAGGHTRRIFEKCPEAKVYALDRDPVAHQLAREL 91

Query: 78  MRD--YKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +   YK +       FS +     + G+     +G++FD G SSMQ D  +RGFS  K 
Sbjct: 92  SQKEKYKGRLIPLLGKFSDIPKLFEEHGLSRNSLNGILFDFGCSSMQFDEAERGFSISKD 151

Query: 131 GPLDMRMS---CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQ 186
           GPLDMRM      G++A++V+++    DL RIL I GEEK A +IA  ++  R++    +
Sbjct: 152 GPLDMRMDGGHSGGVTAAEVLSKIEETDLARILRIYGEEKAAKKIARGLIDARKALVQIE 211

Query: 187 TTQDLSSLIQKTVYFS-KNNRI----HPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
           TT+ L+ L++  +    + +++    H AT++FQALRIFVNNE+ E+  G+  A + L+ 
Sbjct: 212 TTKQLADLVEDILSSGPRRDKLQRPSHSATKTFQALRIFVNNELNEINYGMVLANEILRR 271

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMA-VRHMIP--SNAH-----PAVFQSIT---- 289
            G L+ ++FHSLED +VK+     +G V+A   + +P   + H     P + QS+     
Sbjct: 272 EGRLVTITFHSLEDTIVKRHI---NGNVVAGAANPLPLKYSGHDIIDDPEMLQSLVQTNW 328

Query: 290 ----KKVVVPTQEDVAFNRRSRSAKLRAGMR 316
               + V+VP  E+VA N RSRSAKLRA ++
Sbjct: 329 KPLHRHVIVPDAEEVARNSRSRSAKLRAAVK 359


>gi|291484065|dbj|BAI85140.1| S-adenosyl-methyltransferase MraW [Bacillus subtilis subsp. natto
           BEST195]
          Length = 311

 Score =  197 bits (501), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 119/303 (39%), Positives = 175/303 (57%), Gaps = 11/303 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H  VLL + +  LN  P    +D T G  G+S    +  S    +IA D+D  A+   +E
Sbjct: 4   HKTVLLRETVDGLNIKPDGTYVDCTLGGAGHSTYLLQQLSEKGRLIAFDQDDTALQHAKE 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + DYK Q  L ++ F  L++ + ++G   VDG++FDLGVSS Q+D  +RGFS+    PL
Sbjct: 64  VLSDYKGQLILIKSNFRYLKECLNEQGITEVDGILFDLGVSSPQLDTPERGFSYHHDAPL 123

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  S  +SA +VVN+   +DL RI    GEEK + +IA  I + R  +P QTT  L 
Sbjct: 124 DMRMDQSATLSAKEVVNEWRYEDLVRIFFKYGEEKFSKQIARKIEEARMKSPIQTTGQLV 183

Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            LI+  +   ++ +  HPA R FQA+RI VN+E+    + L  A + LK GG + V++FH
Sbjct: 184 DLIKDAIPAPARRSGGHPAKRVFQAIRIAVNDELRVFEEALEQAIEVLKPGGRVSVITFH 243

Query: 252 SLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+ K  F  +S   ++     +IP    P + + IT+K +  +QE++  N R+RSA
Sbjct: 244 SLEDRICKTTFKEKSSLPELPPGLPVIPEEFEPEL-KLITRKPITASQEELEENNRARSA 302

Query: 310 KLR 312
           KLR
Sbjct: 303 KLR 305


>gi|282862166|ref|ZP_06271229.1| S-adenosyl-methyltransferase MraW [Streptomyces sp. ACTE]
 gi|282563191|gb|EFB68730.1| S-adenosyl-methyltransferase MraW [Streptomyces sp. ACTE]
          Length = 312

 Score =  197 bits (501), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 120/311 (38%), Positives = 181/311 (58%), Gaps = 17/311 (5%)

Query: 24  LLEKVIALLNPA-------PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74
           +L++ + LL PA       P  V++D T G GG+S +       + +IALDRD  A+   
Sbjct: 1   MLQRCLDLLAPALEATGPRP-PVVVDCTLGLGGHSEALLSAFPEARLIALDRDKEALRLS 59

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            E +  Y ++ +L  A + +L + +   G   V GV+FDLGVSSMQ+D  DRGF++ +  
Sbjct: 60  GERLAAYGDRATLVHAVYDELPEVLDRLGIPKVQGVLFDLGVSSMQLDEADRGFAYAQDA 119

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM   +GI A++V+N     +L RIL   GEEKQA RI  A+V+ R+  PF  +  
Sbjct: 120 PLDMRMDQTTGIGAAEVLNTYPPGELVRILRAYGEEKQAKRIVSAVVREREKEPFSNSAR 179

Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  LI+ ++   +K    +PA R+FQALRI VN E+  L + + +A ++L  GG + V+S
Sbjct: 180 LVELIRDSLPQAAKRTGGNPAKRTFQALRIEVNGELTVLERAIPAAVRSLAVGGRIAVLS 239

Query: 250 FHSLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           +HSLEDRLVK+  A+ +         ++P    P   + +T+   +PT+E+VA NRR+  
Sbjct: 240 YHSLEDRLVKQVLAAGAANTAPPGLPVVPERYQPR-LKLLTRGAELPTEEEVAENRRAAP 298

Query: 309 AKLRAGMRTVE 319
           A+LR   R  E
Sbjct: 299 ARLRGAERIRE 309


>gi|238791165|ref|ZP_04634804.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia
           intermedia ATCC 29909]
 gi|238729298|gb|EEQ20813.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia
           intermedia ATCC 29909]
          Length = 320

 Score =  197 bits (501), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 122/311 (39%), Positives = 183/311 (58%), Gaps = 15/311 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN     + +D TFG GG+SR    ++G    +IA+DRDP A+   + 
Sbjct: 14  HTSVLLDEAVNGLNIRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDRDPQAIEAAKS 73

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  +FS+    FS+L  YV +      +DGV+ DLGVSS Q+D  +RGFSF + GP
Sbjct: 74  IT---DPRFSIVHGPFSELAHYVRELDLVGRIDGVLLDLGVSSPQLDDPERGFSFMRDGP 130

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G+SA++ + +A+  D+  +L   GEE+ A R+A AIV+R  + P   T++L
Sbjct: 131 LDMRMDPSRGLSAAEWLMKASADDIAWVLKTFGEERFAKRLAKAIVERNLTQPMTRTKEL 190

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI     F + ++ HPATRSFQA+RI++N+E+EE+ + L  A + L   G L V+SFH
Sbjct: 191 ADLIANASPFREKHK-HPATRSFQAIRIYINSELEEIERALDGALEVLAPAGRLSVISFH 249

Query: 252 SLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSI-TKKVVVPTQEDVAFNRRSRS 308
           SLEDR+VK F    SR  +V A   +  +       +++ +   ++P   +VA N R+RS
Sbjct: 250 SLEDRIVKNFIRHHSRGPQVPAGLPLTEAQLRSMGGRTLKSAGKMMPPDAEVAENPRARS 309

Query: 309 AKLRAGMRTVE 319
           + LR   R  E
Sbjct: 310 SVLRFAERIKE 320


>gi|326791423|ref|YP_004309244.1| S-adenosyl-methyltransferase MraW [Clostridium lentocellum DSM
           5427]
 gi|326542187|gb|ADZ84046.1| S-adenosyl-methyltransferase MraW [Clostridium lentocellum DSM
           5427]
          Length = 311

 Score =  197 bits (501), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 113/303 (37%), Positives = 175/303 (57%), Gaps = 9/303 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
           +HV VLL + I  L   P    +D T G  G++R  C   +   + I +D+D  A++   
Sbjct: 4   EHVSVLLNECIEGLAIKPNGTYVDGTLGGAGHARVVCNYLTEEGHFIGIDQDKNALAVST 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E ++D K + S+  + F ++ + +     +GVDG++ DLGVSS Q+D   RGFS+    P
Sbjct: 64  ERLKDVKPKVSIVNSNFEKVAEVLEVLGIEGVDGMLIDLGVSSHQLDEPSRGFSYMHDAP 123

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM   G  +A +VVN    ++L RI+   GEEK A RIA  IV+ R+  P +TT +L
Sbjct: 124 LDMRMDQDGAYTAYEVVNDMAEEELFRIIKEYGEEKWAKRIAQFIVEERKQKPIETTYEL 183

Query: 192 SSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+K +   ++ +  HPA R+FQA+RI VN E+E +   +++    L +GG L +++F
Sbjct: 184 VEVIKKAIPQGARKDGPHPAKRTFQAIRIAVNRELEIIEPTIKAIVDKLNSGGRLCIITF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  F +         H+ I       + + IT+K ++P+ E++  N RSRSA
Sbjct: 244 HSLEDRIVKHAFRNLENPCTCAPHIPICVCGKKPLVKVITRKPILPSDEEIEINPRSRSA 303

Query: 310 KLR 312
           KLR
Sbjct: 304 KLR 306


>gi|94498181|ref|ZP_01304742.1| S-adenosyl-methyltransferase [Sphingomonas sp. SKA58]
 gi|94422311|gb|EAT07351.1| S-adenosyl-methyltransferase [Sphingomonas sp. SKA58]
          Length = 312

 Score =  197 bits (501), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 126/300 (42%), Positives = 187/300 (62%), Gaps = 9/300 (3%)

Query: 23  VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82
           +LL++V+  L  APG++ +D TFGAGGYS +  + G+ V A DRDP A+  G+     + 
Sbjct: 1   MLLDEVLDALAIAPGEIHVDGTFGAGGYSSAMAQAGARVFAFDRDPDAIREGRAVADAHG 60

Query: 83  EQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
              +L    FS++   + ++ VD   GV  D+GVSSMQ+D  +RGFSFQ  GPLDM MS 
Sbjct: 61  --ITLIPGEFSRMAQLLTERDVDRVAGVTLDIGVSSMQLDRPERGFSFQSDGPLDMTMSQ 118

Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199
            G+SA+D +N A  +D+  ++   GEE ++ R+A AIV  R   P + T  L+++++K +
Sbjct: 119 GGMSAADFLNSAPEEDIADVIYRYGEEPRSRRVARAIVDAR---PLERTAQLAAVVRKAL 175

Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259
            +  +++  PATR+FQA+RI VN E+EEL +GL +AE  L+ GG L +V+FHSLEDR+VK
Sbjct: 176 GYKPHDKKDPATRTFQAIRIHVNRELEELERGLEAAEALLEEGGRLAIVTFHSLEDRIVK 235

Query: 260 KFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318
           +F  +RSG      RH+    A P    +   K V     ++A N R+RSA LR+ +RT 
Sbjct: 236 QFLRNRSGGEGGGSRHLPERTAGPQPTFARPAKAVRAGDAELARNPRARSATLRSAVRTA 295


>gi|187735156|ref|YP_001877268.1| S-adenosyl-methyltransferase MraW [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187425208|gb|ACD04487.1| S-adenosyl-methyltransferase MraW [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 520

 Score =  197 bits (501), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 115/299 (38%), Positives = 174/299 (58%), Gaps = 7/299 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+ VLL + + +L   PGK I+D T G GG++    + G+ V  +DRD  A       + 
Sbjct: 219 HITVLLHETVDMLKAGPGKFIVDCTLGGGGHTELLLEQGATVWGIDRDADARRAAMLRLA 278

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
            +  +F +    F  ++  +  +GV   DG++ DLGVSS Q+D   RGFSF++ GPLDMR
Sbjct: 279 RFGSRFKVLAGNFQDVESILSQQGVSRVDGLLADLGVSSHQLDTASRGFSFREDGPLDMR 338

Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M   + +SA ++VN+A  +++  IL   GEE+ +  IA A+VK R  AP  TT  L+ ++
Sbjct: 339 MDTRAALSARNLVNEAPEEEIANILWQFGEERASRAIARAMVKARAQAPITTTAQLARIV 398

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           +  +   +  R HP TR+FQALRI VN E++ L   L S+ + L  GG + V++FHSLED
Sbjct: 399 ESVL--PRKGRQHPGTRTFQALRIAVNGELDALDALLDSSVRLLGQGGRMAVITFHSLED 456

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHP-AVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           R VK+FF  RS   +          +P   F+ +++K V   +E+++ N RSRSAKLR 
Sbjct: 457 RRVKQFFDLRSRPEIDRPEWPAPRPNPDYCFRPLSRKPVTAGEEELSTNPRSRSAKLRG 515


>gi|271964366|ref|YP_003338562.1| S-adenosylmethionine-dependentmethyltransferase [Streptosporangium
           roseum DSM 43021]
 gi|270507541|gb|ACZ85819.1| S-adenosylmethionine-dependentmethyltransferase [Streptosporangium
           roseum DSM 43021]
          Length = 330

 Score =  197 bits (501), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 112/299 (37%), Positives = 175/299 (58%), Gaps = 10/299 (3%)

Query: 15  HTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69
           H  G HVPV+LE+V+ LL PA   P  V++DA  G GG++ +        ++I +DRDP 
Sbjct: 11  HAPGGHVPVMLERVLELLAPALAGPAPVVVDANLGLGGHAEALLAAHPSLHLIGIDRDPT 70

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFS 126
           A+      +  Y E+ +L +A   +L + + + G   VD V+FDLGVSS Q+D  +RGF+
Sbjct: 71  AIERSTARLAPYAERTTLVRAVSDELTEVLAEAGRPRVDAVLFDLGVSSPQLDEAERGFA 130

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           +    PLDMRM     ++A  VVN  +  +L RIL   GEE+ A R+A  I+K R +   
Sbjct: 131 YSYDAPLDMRMDRDQELTAEIVVNTYSAAELIRILRDYGEERFAPRVARLIIKERGNEAI 190

Query: 186 QTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
            +T+ L+ +++  +   ++    +PA R+FQALRI VN E+  L + L +A  AL  GG 
Sbjct: 191 TSTKRLAEIVRTAIPAATRRTGGNPAKRTFQALRIEVNAELTALERALPAALDALTLGGR 250

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
           ++V+++HSLEDRL K+  A+R+ +       +P  AH   F  +T+   +P++E+VA N
Sbjct: 251 VVVLAYHSLEDRLTKQVLAARTRETGPPGLPVPLPAHQPRFALLTRGAELPSEEEVARN 309


>gi|161344767|ref|NP_440820.2| S-adenosyl-methyltransferase MraW [Synechocystis sp. PCC 6803]
          Length = 297

 Score =  197 bits (501), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 126/306 (41%), Positives = 178/306 (58%), Gaps = 39/306 (12%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQET 77
           HV VL   ++  L P PG   LDAT GAGG+S    K+G    +  +DRD  A++   E 
Sbjct: 13  HVSVLPTALVEGLEPKPGGYYLDATVGAGGHSERLLKLGIPLALTMIDRDVQAIAAAMER 72

Query: 78  MR----DYKE-QFSLFQATFS----QLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
           ++    D K+   + +Q  F+    QL+ +      DG++ DLGVSS Q+D GDRGFSF+
Sbjct: 73  LQPLVADRKDISINTWQGNFADFPGQLEQF------DGIIADLGVSSPQLDQGDRGFSFR 126

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
            + PLDMRM  S  ++A++++N  + KDL RI    GEE+ + RIA  IV++R   PFQT
Sbjct: 127 HTAPLDMRMDQSQDLTAAEIINHWSEKDLARIFYEYGEERLSRRIARQIVEQR---PFQT 183

Query: 188 TQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T DL+  I K V    ++ RIHPATR+FQ LRI VN+E+  L + +  A   LK+GG   
Sbjct: 184 TTDLAEAITKWVPGKYRHGRIHPATRTFQGLRIAVNDELGSLEKFIAQAPHWLKSGGKFG 243

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           ++SFHSLEDR+VK  F  R  + + V               +TKK ++  +E+   N R+
Sbjct: 244 IISFHSLEDRIVKHRF--RETENLRV---------------LTKKPIIAGEEEQRQNPRA 286

Query: 307 RSAKLR 312
           RSAKLR
Sbjct: 287 RSAKLR 292


>gi|313884959|ref|ZP_07818711.1| S-adenosyl-methyltransferase MraW [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619650|gb|EFR31087.1| S-adenosyl-methyltransferase MraW [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 318

 Score =  197 bits (501), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 114/314 (36%), Positives = 184/314 (58%), Gaps = 21/314 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H  VLL + I  L+  P  + +D T G  G++     + S   ++ A D+D  A+   Q+
Sbjct: 6   HTSVLLHETIDQLDINPNGIYVDCTLGGAGHAAYLLSLLSPKGHLYAFDQDMNAIKNAQD 65

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            + DY  K+Q +   A F+QL++ + ++GV   DG+ +DLGVSS Q+D  +RGFS++K  
Sbjct: 66  RLHDYIEKDQVTFIHANFAQLKEQLAERGVSYVDGIYYDLGVSSPQLDQAERGFSYKKEA 125

Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+    ++A ++VN+   + + +I+   GEE+ A RI  AI + R++ P +TT +
Sbjct: 126 PLDMRMNQEDKLTAYEIVNEWPYEKIVKIIDHYGEERFAKRITRAIEQARKNKPIETTLE 185

Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ ++++ +   ++ +  HPA R+FQA+RI VN+E+  +   L  A   LK GG + V+S
Sbjct: 186 LAEIVKEAIPAATRRSGGHPAKRTFQAIRIAVNDELNVIETSLNQAFTLLKVGGRISVIS 245

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNA------HPAVFQSITKKVVVPTQEDVAFN 303
           FHSLEDR+VK+ F  +S      R  +P N         A F  + +K ++ +QE++  N
Sbjct: 246 FHSLEDRIVKQLFRDKSS-----RPDLPPNLPILPERTEADFALVNRKPILASQEELDEN 300

Query: 304 RRSRSAKLRAGMRT 317
            RSRSAKLR   R 
Sbjct: 301 NRSRSAKLRVIQRN 314


>gi|117928210|ref|YP_872761.1| S-adenosyl-methyltransferase MraW [Acidothermus cellulolyticus 11B]
 gi|263433362|sp|A0LTL5|RSMH_ACIC1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|117648673|gb|ABK52775.1| S-adenosyl-methyltransferase MraW [Acidothermus cellulolyticus 11B]
          Length = 329

 Score =  197 bits (501), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 104/253 (41%), Positives = 159/253 (62%), Gaps = 10/253 (3%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           H PV++++V+ LL PA   PG +++DAT G GG++ +  +  S   +I LD DP A+   
Sbjct: 15  HRPVMVDRVVELLLPALGYPGAIVVDATVGLGGHAEAVVRAASAATLIGLDHDPHAIRLA 74

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQKSG 131
            + +  Y ++  L    F +L   + ++G+  V   +FDLG+SS+ ID   RGF++ +  
Sbjct: 75  AQRLAGYADRVQLVNVAFDRLAQVLSERGISAVAAILFDLGLSSLHIDDPARGFAYSRDV 134

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM      +A+DVVN  +  +L R+L + GEE+ A RIA AIV+RR   P  +T+D
Sbjct: 135 PLDMRMDPRLPRTAADVVNTYSATELARVLRVYGEERFAVRIADAIVRRRARQPITSTRD 194

Query: 191 LSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           LS L+++ +   ++    HPA R+FQALRI VN+E+  L + L  A  AL+ GG ++V+S
Sbjct: 195 LSELVREAIPAPARRTGGHPAKRTFQALRIEVNDELGRLERTLPVAIAALQPGGRIVVLS 254

Query: 250 FHSLEDRLVKKFF 262
           +HSLEDR VK+FF
Sbjct: 255 YHSLEDRTVKRFF 267


>gi|170718775|ref|YP_001783958.1| S-adenosyl-methyltransferase MraW [Haemophilus somnus 2336]
 gi|263456057|sp|B0US59|RSMH_HAES2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|168826904|gb|ACA32275.1| S-adenosyl-methyltransferase MraW [Haemophilus somnus 2336]
          Length = 321

 Score =  197 bits (500), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 128/318 (40%), Positives = 182/318 (57%), Gaps = 28/318 (8%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSR----SFCKMGSNVIALDRDPFAVSCG 74
           +H  VLL + +  L      + +D TFG GG+SR       K G  +IA+DRDP A+   
Sbjct: 11  EHFTVLLREAVGGLALKENGIYIDGTFGRGGHSRFILSQLSKKG-QLIAIDRDPQAIQVA 69

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           Q  ++D +  F +   +FS + D     G    +DG++ DLGVSS Q+D  +RGFSF K 
Sbjct: 70  Q-NIQDPR--FRIVHDSFSAIPDICEKLGLTGKIDGILLDLGVSSPQLDNAERGFSFMKD 126

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA------ 183
           GPLDMRM  + G+SA++ + Q + +DL  +L   GEE+ A RIA AIV   +SA      
Sbjct: 127 GPLDMRMDTTQGLSATEWLRQVSEQDLAWVLKTFGEERFAKRIAQAIVGYNKSAVQSGAE 186

Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
           P   T  L+ LI ++V F K+   HPATRSFQA+RIF+N+E++EL + L  A   L   G
Sbjct: 187 PLNRTLQLAELIAQSVPF-KDKYKHPATRSFQAIRIFINSELDELEKVLNGALNVLAPQG 245

Query: 244 LLIVVSFHSLEDRLVKKFFASRSG-----KVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
            L ++SFHSLEDR+VK F   +S      K + +R       H    + +  K ++PT++
Sbjct: 246 RLSIISFHSLEDRMVKHFIRKQSKGDDLPKGLPLRE--EQIQHNQKLKPVG-KAIMPTEQ 302

Query: 299 DVAFNRRSRSAKLRAGMR 316
           ++A N RSRSA LR   R
Sbjct: 303 EMAANVRSRSAVLRIAER 320


>gi|42559481|sp|Q8GE08|RSMH_HELMO RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|27262272|gb|AAN87417.1| methyltransferase [Heliobacillus mobilis]
          Length = 312

 Score =  197 bits (500), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 117/307 (38%), Positives = 181/307 (58%), Gaps = 10/307 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+PVLLE+V+  L P P  + LD T G GG+S +  +  +    +I LD+DP A++  + 
Sbjct: 5   HIPVLLEEVLEALQPRPDGLYLDGTVGGGGHSAAILEKTAGQGRLIGLDQDPRALAAARI 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            +  + +Q +L ++ F QL   V + G    +DG++ D+GVSS Q+D  +RGF+++   P
Sbjct: 65  KLEKFADQVTLVRSNFRQLGSVVEELGQKGKIDGILLDIGVSSHQLDEAERGFTYRAEAP 124

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+  G ++A+ ++N+    ++ RIL   GEE+ + RIA  IV RR   P  +T DL
Sbjct: 125 LDMRMNPDGAVTAAQILNEYPEGEIFRILWEYGEERWSKRIAQFIVNRRTEQPLASTTDL 184

Query: 192 SSLIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+  +  +      HPA R+FQALRI VN+E+  L + L +A  AL   G L V+SF
Sbjct: 185 VDVIRAAIPAAARQEGGHPAKRTFQALRIAVNDELGALQEALPAALDALAPSGRLAVISF 244

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK FFA ++        M +      A  + IT+K +  ++E++  N RS+SA
Sbjct: 245 HSLEDRIVKNFFAEQAKGCTCPPDMPVCGCGKKARLKIITRKPITGSEEELKINPRSQSA 304

Query: 310 KLRAGMR 316
           KLR   +
Sbjct: 305 KLRVAQK 311


>gi|285019581|ref|YP_003377292.1| S-adenosyl-methyltransferase [Xanthomonas albilineans GPE PC73]
 gi|283474799|emb|CBA17298.1| putative s-adenosyl-methyltransferase protein [Xanthomonas
           albilineans]
          Length = 333

 Score =  197 bits (500), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 119/305 (39%), Positives = 170/305 (55%), Gaps = 7/305 (2%)

Query: 12  AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDP 68
           A+ +    HVPVL  +V+  L      + LD TFG GG++R        G  ++ +D+DP
Sbjct: 11  AVSYPSAAHVPVLFAQVMDGLQVIENGIYLDGTFGRGGHARGVLHKLGPGGRLLVMDKDP 70

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
            A++  +        + S+ + +F+ L  +     +DGV+FDLGVSS Q+D  +RGFSF 
Sbjct: 71  EAIAEAEHAF-GGDARVSIRRGSFADLGHWDAATALDGVLFDLGVSSPQLDVAERGFSFG 129

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           K GPLDMRM   +G SA+  + +A+ +++  +L   GEE+Q+ RIA AIV RR   P   
Sbjct: 130 KDGPLDMRMDPHAGESAAQWLARADEREIADVLWHYGEERQSRRIARAIVARRAEQPLTR 189

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T  L+ LI  TV    +++ HPATRSFQA+RI  N E+ +L  GL +A   LK GG L V
Sbjct: 190 TAQLAELI-ATVMPRGDSKTHPATRSFQAIRIHTNRELADLESGLDAALARLKPGGRLAV 248

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +SFHSLEDR+VK F   R  K       +P          +    +    E++A N R+R
Sbjct: 249 ISFHSLEDRIVKHFM-QRHAKAPPSNRRLPEAQTFVPALRLHGGAIKADAEELAGNPRAR 307

Query: 308 SAKLR 312
           SA LR
Sbjct: 308 SAVLR 312


>gi|87122635|ref|ZP_01078512.1| hypothetical protein MED121_20371 [Marinomonas sp. MED121]
 gi|86162093|gb|EAQ63381.1| hypothetical protein MED121_20371 [Marinomonas sp. MED121]
          Length = 313

 Score =  197 bits (500), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 116/309 (37%), Positives = 177/309 (57%), Gaps = 14/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H+ V+L + +  L   P    +D TFG GG+SR   +   N  ++  D+DP A+  G+  
Sbjct: 8   HISVMLNESVEDLITDPNGNYIDGTFGRGGHSRLVLQKLENGKLLGFDKDPVAIEYGK-A 66

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           +     +F + Q +F+ +  Y+         +DGV+ DLGVSS Q+D  +RGFSF   GP
Sbjct: 67  LEGEDARFQIVQDSFASMDQYIASHLDESGKLDGVLMDLGVSSPQLDDAERGFSFMNDGP 126

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+   G+SA+  + QA  K++  ++   GEE+ + RIA AI + R      TT  L
Sbjct: 127 LDMRMNPGVGLSAAQWIAQAKEKEIADVMYQYGEERFSRRIAKAICEYRAHTEILTTLQL 186

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           +++++      +  + +PATR+FQ +RIF+NNE+ +L  GL SA  ALK GG L+V+SFH
Sbjct: 187 ANIVKDANPAWEKGK-NPATRAFQGIRIFINNELGDLETGLESAANALKVGGRLVVISFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+VK+F  + S      RH+   N   ++      K + P++++V  N RSRSA  
Sbjct: 246 SLEDRIVKRFMKTMSKGPDLPRHLPIRNTELSIKFKTIGKAIKPSKQEVDDNVRSRSAV- 304

Query: 312 RAGMRTVER 320
              MR +ER
Sbjct: 305 ---MRVLER 310


>gi|330813725|ref|YP_004357964.1| rRNA small subunit methyltransferase H [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327486820|gb|AEA81225.1| rRNA small subunit methyltransferase H [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 333

 Score =  197 bits (500), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 113/308 (36%), Positives = 167/308 (54%), Gaps = 16/308 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77
           H PV+L +VI  L P     I+D TFG GGYS+   +      V+ +DRDP         
Sbjct: 4   HYPVMLNEVITSLEPRSKTTIVDCTFGCGGYSQKILETFPDCKVVGIDRDPSVQEFATIL 63

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQKSGPLD 134
            + +K +F      FS L++ + +K  D +   VFD G+SS Q+D  DRGFSF  +  LD
Sbjct: 64  EKKFKNRFFFINDKFSNLEEII-NKHKDEIGSFVFDFGISSFQLDNHDRGFSFNSNIKLD 122

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRM  + ISA +++N+A+++DL  I+ I GE+K   +IA  IV+ R   P  +TQDL + 
Sbjct: 123 MRMGKNKISAYELLNEASLEDLNSIIKIFGEDKDHKKIAKEIVRTRDIKPIHSTQDLCNA 182

Query: 195 IQK---TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           I K     YF KN    P+T++FQA+R+ VN E+ E+   L    K      ++  V+FH
Sbjct: 183 ILKAKGNKYFKKN----PSTKTFQAIRMIVNQELSEIFNSLTRVIKICNPDTIVTAVTFH 238

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAH---PAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SLEDR+VKK F             IP+          Q +  + + P+++++  N RSRS
Sbjct: 239 SLEDRIVKKIFNISKDSDQNPSRYIPTTHQEKKETFIQRVNNRALKPSEQEIVSNPRSRS 298

Query: 309 AKLRAGMR 316
           AKLR+  +
Sbjct: 299 AKLRSATK 306


>gi|153953806|ref|YP_001394571.1| S-adenosyl-methyltransferase MraW [Clostridium kluyveri DSM 555]
 gi|219854422|ref|YP_002471544.1| hypothetical protein CKR_1079 [Clostridium kluyveri NBRC 12016]
 gi|263447433|sp|B9E0V5|RSMH_CLOK1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|146346687|gb|EDK33223.1| MraW [Clostridium kluyveri DSM 555]
 gi|219568146|dbj|BAH06130.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 309

 Score =  197 bits (500), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 118/308 (38%), Positives = 177/308 (57%), Gaps = 15/308 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+PVLL++ I  LN     V +D T G GG+S    K  S+   +IA+D+D  A++  +E
Sbjct: 5   HIPVLLKETIDSLNIKQDGVYVDCTLGGGGHSLEILKRLSDKGKLIAIDQDISAINWSEE 64

Query: 77  TMRDYK------EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            ++++K      + F   Q    +L+    DK VDG++ DLGVSS Q+D G RGFS+ K 
Sbjct: 65  RLKNFKNIIYVHDNFYNIQQILKELK---IDK-VDGIIMDLGVSSYQLDEGKRGFSYMKD 120

Query: 131 GPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM+  S +SA ++VNQ N ++L RI+   GEE  + RI+  IVK R+ +P  TT 
Sbjct: 121 APLDMRMNRDSSLSAYEIVNQYNEEELCRIIRDYGEENFSRRISKFIVKAREESPISTTL 180

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            L  +I+K +        HPA R+FQA+RI VN E++ L + +      L  GG + +++
Sbjct: 181 QLVGIIKKAIPLKFQKEGHPAKRTFQAIRIEVNEELKILDKAVEDGVANLNTGGRIAIIT 240

Query: 250 FHSLEDRLVK-KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR++K KF    +         I       + + + KK +VPT+E+ + N RS+S
Sbjct: 241 FHSLEDRIIKSKFKMLENPCTCPADFPICICGKKPIVKIVNKKPIVPTEEEKSINPRSKS 300

Query: 309 AKLRAGMR 316
           +KLR   R
Sbjct: 301 SKLRIAER 308


>gi|309812627|ref|ZP_07706371.1| S-adenosyl-methyltransferase MraW [Dermacoccus sp. Ellin185]
 gi|308433322|gb|EFP57210.1| S-adenosyl-methyltransferase MraW [Dermacoccus sp. Ellin185]
          Length = 323

 Score =  197 bits (500), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 116/306 (37%), Positives = 180/306 (58%), Gaps = 9/306 (2%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74
           HVPV+L +++  L P+    G + +DAT G GG++ +  +    +  I +DRD  A+   
Sbjct: 12  HVPVMLTEILDALAPSLERSGALYVDATLGMGGHTEAVLERFGEARAIGIDRDTEALRLA 71

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
            E +  + ++F    A  +++ D +P +  D ++FDLGVSS+Q+D  DRGFS++   PLD
Sbjct: 72  GERLARFGDRFEGVHAVNTEVADVLP-RPADAMLFDLGVSSLQLDELDRGFSYRADAPLD 130

Query: 135 MRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           MRM  +  G +A+DV+N A+  +L RIL   GEE+ A +IAHA+VK R+  P+ T+  L 
Sbjct: 131 MRMDQTSDGPTAADVLNTASQDELERILKTYGEERFARKIAHAVVKEREKQPWTTSGRLV 190

Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +++  +   S+    HPA R+FQALRI VN+E+    Q + SA  +L  GG L V+SFH
Sbjct: 191 EMLRSVIPLASQRQSGHPAKRTFQALRIEVNDELRGWEQAVTSALDSLAVGGRLAVLSFH 250

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+ K+ FA+ S         +    H   F  +T+   VP+++++  N RS S +L
Sbjct: 251 SLEDRITKRAFATASASTAPPGLPVELPQHRPEFALVTRGAAVPSEDELESNPRSASVRL 310

Query: 312 RAGMRT 317
           R   RT
Sbjct: 311 RVIERT 316


>gi|46580916|ref|YP_011724.1| S-adenosyl-methyltransferase MraW [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120601783|ref|YP_966183.1| S-adenosyl-methyltransferase MraW [Desulfovibrio vulgaris DP4]
 gi|50402222|sp|P62470|RSMH_DESVH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446337|sp|A1VBE0|RSMH_DESVV RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|46450336|gb|AAS96984.1| S-adenosyl-methyltransferase MraW [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120562012|gb|ABM27756.1| S-adenosyl-methyltransferase MraW [Desulfovibrio vulgaris DP4]
 gi|311234607|gb|ADP87461.1| S-adenosyl-methyltransferase MraW [Desulfovibrio vulgaris RCH1]
          Length = 323

 Score =  197 bits (500), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 120/305 (39%), Positives = 170/305 (55%), Gaps = 12/305 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H+PVLLE+V+  L P  G   LD T G  G++ +  +    G+ +  LDRDP A+     
Sbjct: 16  HIPVLLEEVLEYLAPRKGGRYLDGTLGLAGHASAVLERAGEGTELCGLDRDPEALRRATA 75

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  +  Q  L+   +S+ ++ + D G   VDG + D+GVSSMQID  +RGFSF   GPL
Sbjct: 76  RLAPFAGQTHLYHLRYSEFEEALDDLGWPTVDGALIDIGVSSMQIDLAERGFSFHADGPL 135

Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM      SA  +VN+   + L  I+   GEE  A RIA AIV  R +    TT  L+
Sbjct: 136 DMRMDPDAHESAWRLVNRERHEVLRDIIARYGEEPMAGRIARAIVDARNTGSIDTTLQLA 195

Query: 193 SLIQKT--VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           +++++     +    R HPATR+FQALR+ VN+E+ EL + L +    L  GG L+V+SF
Sbjct: 196 AIVERAYPAKWRATARNHPATRTFQALRMAVNDELGELERFLDAILARLAPGGRLVVISF 255

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+VK      +      RH +P     H    + +TK+ V  T  ++A N R+ S
Sbjct: 256 HSLEDRIVKHRMRHWAEGCRCPRH-VPRCVCGHSPEVRILTKRPVTATDGELARNPRASS 314

Query: 309 AKLRA 313
           AKLRA
Sbjct: 315 AKLRA 319


>gi|159027563|emb|CAO86934.1| MraW [Microcystis aeruginosa PCC 7806]
          Length = 293

 Score =  197 bits (500), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 120/303 (39%), Positives = 180/303 (59%), Gaps = 29/303 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77
           H+ VL +++IA LN  PG   LD T G GG+SR   +    + V A+DRD  A+   + +
Sbjct: 7   HISVLSQELIAGLNIQPGGHYLDLTLGGGGHSRLLLEAHPETKVTAIDRDQSALEAAKIS 66

Query: 78  MRDYKE-QFSLFQATFSQLQDYV-PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           +  Y + + +L+   F+   DY   +   DG++ DLGVSS Q D  +RGFSF+ +  LDM
Sbjct: 67  LAPYLDSRLTLWWGNFA---DYKGQNSSFDGIIADLGVSSPQFDQSERGFSFRHTAALDM 123

Query: 136 RMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM  C  ++A+D++N    K+L  +    GEE+ +  IA +IV++R   PF TT +L+++
Sbjct: 124 RMDRCQSLTAADIINHWQEKELADLFYQYGEERLSRPIARSIVQKR---PFTTTTELAAV 180

Query: 195 IQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           I  +V  S +  RIHPATR FQ+LRI VN E++ L + L  A + LK+GG++ ++SFHSL
Sbjct: 181 IASSVPASYRYGRIHPATRVFQSLRIAVNQELDSLQKLLNQAPQWLKSGGIIAMISFHSL 240

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           EDRL+K  F  R    + +               ITKK ++P++E+ A N RSRSAKLR 
Sbjct: 241 EDRLIKYGF--REDNSLKI---------------ITKKPIIPSREEQAKNPRSRSAKLRI 283

Query: 314 GMR 316
             +
Sbjct: 284 AQK 286


>gi|254446788|ref|ZP_05060263.1| S-adenosyl-methyltransferase MraW [Verrucomicrobiae bacterium
           DG1235]
 gi|198256213|gb|EDY80522.1| S-adenosyl-methyltransferase MraW [Verrucomicrobiae bacterium
           DG1235]
          Length = 305

 Score =  197 bits (500), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 116/299 (38%), Positives = 170/299 (56%), Gaps = 9/299 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78
           HVPVL  + +  L P+ G + LD TFG GG++    +  +  V+ALD+DP AV+   E  
Sbjct: 4   HVPVLAAETLEHLAPSDGGLYLDCTFGGGGHTELVLEAANCTVVALDQDPAAVARAAELK 63

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138
             Y ++    +  F  L D + +   DG++FD GVSS Q+D  DRGFSF+   PLDMRM 
Sbjct: 64  ERYGDRLRFHRMNFETL-DQLEEGPFDGILFDFGVSSFQLDEVDRGFSFRGEAPLDMRMD 122

Query: 139 C-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK 197
             SG+SA+  +  A+  DL R +    EEK   +I +AI+  R+     TT  L+ LI  
Sbjct: 123 PESGVSAAQWLATADQADLLRAIRGYAEEKNWRKIVNAILAAREKNELSTTTQLADLILS 182

Query: 198 T----VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
                V F  N+++HPAT+ FQ +RI +N+EI  + +GL +A   LK GG+L  +SFHSL
Sbjct: 183 CTPARVRF--NSKLHPATKVFQGIRIAINDEIGVIERGLPAAFDKLKTGGILCAISFHSL 240

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           EDR+ K  +   +G+    R   P +      + + K+ +  + ++VA N RSRSAKLR
Sbjct: 241 EDRVAKVLYRRWAGRPEGSRDNRPQDMRVTRAELLGKRPITASDKEVAVNPRSRSAKLR 299


>gi|160872354|ref|ZP_02062486.1| S-adenosyl-methyltransferase MraW [Rickettsiella grylli]
 gi|159121153|gb|EDP46491.1| S-adenosyl-methyltransferase MraW [Rickettsiella grylli]
          Length = 312

 Score =  197 bits (500), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 119/303 (39%), Positives = 184/303 (60%), Gaps = 13/303 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H PVLL +VI  L      + +DATFG GG++    +  S+    IA+D+DP A++ G +
Sbjct: 7   HQPVLLTEVIENLVLDKDGIYVDATFGRGGHAGQILQRLSDKGRCIAIDKDPAAMAFGIQ 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
               + ++F ++Q +FSQL+     +GV     G++FDLGVSS Q++  +RGFSF + GP
Sbjct: 67  QW-GHDKRFKIYQGSFSQLKTMAEREGVINKVSGILFDLGVSSPQLEKAERGFSFLREGP 125

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM   +GISA++ +  A  K++ ++L   GEE+ A RIA AIV+ ++  P  TT  L
Sbjct: 126 LDMRMDPLTGISAAEWLAHAKEKEIVKVLKNYGEERYAKRIARAIVEEQKLRPIVTTVQL 185

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           ++++ K  +   +   HPATR+FQA+RI +NNE+E+L   L  +   LK GG L+V+SFH
Sbjct: 186 ANVV-KLAHPHWDRFKHPATRTFQAIRIQINNELEDLNVSLGQSIDVLKQGGRLLVISFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK+F    + + + ++ +  +P+       + I +  V P    +  N RSRSA
Sbjct: 245 SLEDRIVKRFIHQHAHEAVELKKLPFMPAEWKRPRLKKIGRG-VKPDAYAIKTNPRSRSA 303

Query: 310 KLR 312
            LR
Sbjct: 304 LLR 306


>gi|298369646|ref|ZP_06980963.1| S-adenosyl-methyltransferase MraW [Neisseria sp. oral taxon 014
           str. F0314]
 gi|298282203|gb|EFI23691.1| S-adenosyl-methyltransferase MraW [Neisseria sp. oral taxon 014
           str. F0314]
          Length = 323

 Score =  197 bits (500), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 123/306 (40%), Positives = 177/306 (57%), Gaps = 10/306 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQE 76
           H+ VLL + +  LN  P  V +D TFG GG+SR    ++G    +I  D+DP A+   ++
Sbjct: 9   HITVLLNEAVDALNIRPDGVYVDGTFGRGGHSRLILSRLGEEGRLIVFDKDPQAIVAARK 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  Y  + S+    FS  Q  + + G   VDG +FDLGVSS QID G RGFSF+   PL
Sbjct: 69  -LAAYDMRVSVVHDGFSVFQTALDELGIGKVDGALFDLGVSSPQIDEGGRGFSFRFDAPL 127

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  + G+SA++ +  A+ +DL  ++   GEE+ + +IA AIV +R+ +P  TT+ L+
Sbjct: 128 DMRMDPTRGMSAAEWIATASEQDLNEVIKNYGEERFSRQIARAIVAQREESPIDTTRKLA 187

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            L+ + V   +  +  PATR+FQA+RIF+N E+EE+   L  A   LK GG L V++FHS
Sbjct: 188 QLVAQNVRTRERGQ-DPATRTFQAVRIFINRELEEIEAVLPQATGRLKEGGRLAVIAFHS 246

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK+F   +S      R +    A  P        K V P+  ++  N RSRSA L
Sbjct: 247 LEDRIVKQFIKKQSQHAPLPRWVAVKEADLPQPPLRPVGKAVRPSDAEIQANPRSRSAVL 306

Query: 312 RAGMRT 317
           R   RT
Sbjct: 307 RVAERT 312


>gi|206889537|ref|YP_002249141.1| S-adenosyl-methyltransferase MraW [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|262825898|sp|B5YFU3|RSMH_THEYD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|206741475|gb|ACI20532.1| S-adenosyl-methyltransferase MraW [Thermodesulfovibrio yellowstonii
           DSM 11347]
          Length = 292

 Score =  197 bits (500), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 120/302 (39%), Positives = 180/302 (59%), Gaps = 26/302 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H+PV++++VI LLNP  G + +DAT G GG+S +  K  S    +I +DRD  A+     
Sbjct: 7   HIPVMVKEVIQLLNPY-GGIYVDATLGCGGHSLAILKRLSPDGRLIGIDRDESAIFYANR 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + D +    L +A+FS L++ + +   + +DG++FDLGVS +Q+   +RGFSF     L
Sbjct: 66  ILDDSR--VILRKASFSHLKEVLSELNIEKIDGIIFDLGVSMLQLKDFERGFSFHSEERL 123

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     ++A DVVN+   + LT+I    G+E  A RIA  I+++R      T ++L+
Sbjct: 124 DMRMDQTEPLTAWDVVNKYPEQKLTQIFRDYGDEPFARRIAREIIRQRGKKTIDTCKELA 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            L++KTV   ++ R+HPAT+ FQA+RI VN E EEL QGL  A + L +GG + V+S+HS
Sbjct: 184 DLVKKTV--PRHGRLHPATQIFQAIRIEVNREFEELRQGLLQAVELLNSGGRICVISYHS 241

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
            EDR+VK FF     K                 + +TKK ++P+ E+VA N  +RSA+LR
Sbjct: 242 GEDRVVKNFFREEEQK--------------GNLRILTKKPLLPSLEEVAKNPSARSARLR 287

Query: 313 AG 314
            G
Sbjct: 288 GG 289


>gi|282889763|ref|ZP_06298302.1| hypothetical protein pah_c004o134 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500337|gb|EFB42617.1| hypothetical protein pah_c004o134 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 310

 Score =  197 bits (500), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 117/302 (38%), Positives = 173/302 (57%), Gaps = 10/302 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCGQE 76
           H  VL+++VI   +P   ++ +D T GAGG+S +       +   IA+D+DP A++   E
Sbjct: 5   HQSVLMKEVIESFSPCSLRIFIDGTAGAGGHSAALLATHPEIERLIAIDQDPLALTVAAE 64

Query: 77  TMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  + E+ +     F  L+   D +    VDG++ DLGVSSMQ+D  ++GFSF K GPL
Sbjct: 65  NLAPWSEKVTFVSGNFENLEKFLDQLEISTVDGILLDLGVSSMQLDIAEKGFSFSKEGPL 124

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM   + ++A+ VVN    K+L RI    GEE+     A AIV+ R      TTQ L 
Sbjct: 125 DMRMDPRNPLTAAIVVNTWPQKELERIFRDYGEERHWRAAARAIVQARAEKQILTTQQLV 184

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +++  + F+   RIHP T  FQALRI VN E++ + + + +A + LK GG L ++SFHS
Sbjct: 185 EVLRPVLRFNPAKRIHPCTLVFQALRICVNKELDVVERVIPAAIRRLKKGGRLGIISFHS 244

Query: 253 LEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           LED +VK  F   +      R +  +  +  P V + +T+K +V   E+VA N RSRSAK
Sbjct: 245 LEDGIVKNLFRHAASDKWDTRGLAGLFRDKDPEV-RLLTRKPLVANDEEVAANPRSRSAK 303

Query: 311 LR 312
           LR
Sbjct: 304 LR 305


>gi|71281391|ref|YP_271121.1| S-adenosyl-methyltransferase MraW [Colwellia psychrerythraea 34H]
 gi|88909194|sp|Q47VQ1|RSMH_COLP3 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|71147131|gb|AAZ27604.1| S-adenosyl-methyltransferase MraW [Colwellia psychrerythraea 34H]
          Length = 316

 Score =  197 bits (500), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 126/316 (39%), Positives = 184/316 (58%), Gaps = 18/316 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H+ VLL + +  L        +D TFG GG+S     K+  N  +IA+DRDP A++   E
Sbjct: 7   HISVLLNEAVDGLAITDDGCYIDCTFGRGGHSSVILSKLSDNGRLIAIDRDPTAITAA-E 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +D K +F +    F+ L +          VDG++ DLGVSS Q+D  +RGFSF K GP
Sbjct: 66  KFKDDK-RFLIEHQGFAALAEIAEKHELTGKVDGILLDLGVSSPQLDEAERGFSFMKDGP 124

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G +A++ +  A+V+D+T +L   GEEK A RIA+AIV  R+  P   T  L
Sbjct: 125 LDMRMDTSKGQTAAEWLAVADVEDITWVLRTFGEEKHAWRIANAIVDTREETPLTRTSQL 184

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI KT    +  + HPATRSFQA+R+++N+E++++ + L ++   L  GG L+V+SFH
Sbjct: 185 AKLI-KTTAPQREIKKHPATRSFQAIRMYINSELDQIEKALVASLDVLAEGGRLVVISFH 243

Query: 252 SLEDRLVKKFFASRSGKVMAVRHM----IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           SLEDRLVK+F    S      R +    I  N    +  S+  + + P+Q +V  N RSR
Sbjct: 244 SLEDRLVKQFMKKHSQGKKVPRGLPISEIELNKGKKL--SLVGRRLKPSQTEVEENVRSR 301

Query: 308 SAKLRAGMRTVERSIE 323
           S+ LR   R +ER+ +
Sbjct: 302 SSVLRVAER-LERNTD 316


>gi|52425730|ref|YP_088867.1| S-adenosyl-methyltransferase MraW [Mannheimia succiniciproducens
           MBEL55E]
 gi|115311583|sp|Q65RX8|RSMH_MANSM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|52307782|gb|AAU38282.1| unknown [Mannheimia succiniciproducens MBEL55E]
          Length = 322

 Score =  196 bits (499), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 130/316 (41%), Positives = 178/316 (56%), Gaps = 24/316 (7%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQ 75
           +H+ VLL + +  L      + +D TFG GG+SR    K+  N  +IA+DRDP A++  +
Sbjct: 11  EHITVLLHEAVDGLALKDKGIYIDGTFGRGGHSRLILSKLTENGRLIAIDRDPRAIAAAE 70

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           E       +F +   +FS +  Y+ +K      +DG++ DLGVSS Q+D  +RGFSF K 
Sbjct: 71  EIQ---DSRFHIEHNSFSAIP-YICEKLGLVGKIDGILLDLGVSSPQLDDAERGFSFMKD 126

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA------ 183
           GPLDMRM  S G+SA+  + Q   +DL  +L   GEE+ A RIAHAIV   +SA      
Sbjct: 127 GPLDMRMDTSKGLSAAQWLQQVTEEDLAWVLKTFGEERFAKRIAHAIVNYNKSAVQNGTE 186

Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
           P   T  L+ LI + V F K+   HPATRSFQA+RIF+N+E++EL   L SA   L   G
Sbjct: 187 PLTRTLPLAELIAQAVPF-KDKHKHPATRSFQAIRIFINSELDELESVLHSALTVLAPEG 245

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK---KVVVPTQEDV 300
            L V+SFHSLEDR+VK F   +S K  ++   +P            K   K + P + +V
Sbjct: 246 RLSVISFHSLEDRMVKHFMRKQS-KGESIPKGLPLREDQINRNRTLKVIGKAIQPKESEV 304

Query: 301 AFNRRSRSAKLRAGMR 316
             N RSRSA LR   R
Sbjct: 305 FANPRSRSAVLRVAER 320


>gi|321315277|ref|YP_004207564.1| 16S rRNA m(4)C1402 methyltranserfase [Bacillus subtilis BSn5]
 gi|320021551|gb|ADV96537.1| 16S rRNA m(4)C1402 methyltranserfase [Bacillus subtilis BSn5]
          Length = 311

 Score =  196 bits (499), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 118/303 (38%), Positives = 175/303 (57%), Gaps = 11/303 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H  VLL + +  LN  P    +D T G  G+S    +  S    +IA D+D  A+   +E
Sbjct: 4   HKTVLLRETVDGLNIKPDGTYVDCTLGGAGHSTYLLQQLSEKGRLIAFDQDDTALQHAKE 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + DYK Q  L ++ F  L++ + ++G   VDG++FDLGVSS Q+D  +RGFS+    PL
Sbjct: 64  VLSDYKGQLILIKSNFRYLKECLNEQGITEVDGILFDLGVSSPQLDTPERGFSYHHDAPL 123

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  S  ++A +VVN+   +DL RI    GEEK + +IA  I + R  +P QTT  L 
Sbjct: 124 DMRMDQSATLTAKEVVNEWRYEDLVRIFFKYGEEKFSKQIARKIEEARMKSPIQTTGQLV 183

Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            LI+  +   ++ +  HPA R FQA+RI VN+E+    + L  A + LK GG + V++FH
Sbjct: 184 DLIKDAIPAPARRSGGHPAKRVFQAIRIAVNDELRVFEEALEQAIEVLKPGGRVSVITFH 243

Query: 252 SLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+ K  F  +S   ++     +IP    P + + IT+K +  +QE++  N R+RSA
Sbjct: 244 SLEDRICKTTFKEKSSLPELPPGLPVIPEEFEPEL-KLITRKPITASQEELEENNRARSA 302

Query: 310 KLR 312
           KLR
Sbjct: 303 KLR 305


>gi|28199742|ref|NP_780056.1| S-adenosyl-methyltransferase MraW [Xylella fastidiosa Temecula1]
 gi|28057863|gb|AAO29705.1| conserved hypothetical protein [Xylella fastidiosa Temecula1]
          Length = 322

 Score =  196 bits (499), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 118/312 (37%), Positives = 171/312 (54%), Gaps = 10/312 (3%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65
           M     H    HVPVL  + +  L        LD TFG GG++R   +    G  ++ +D
Sbjct: 1   MDGLAPHLSMTHVPVLYTQAMEGLRVVENGTYLDGTFGRGGHARGVLQQLGPGGRLLVMD 60

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125
           +DP A++  +        +  +   +F+ L      + +DGV+FDLGVSS Q+D  +RGF
Sbjct: 61  KDPEAIAMAERAF-SCDPRVVIRHGSFALLAQLAAPQSLDGVLFDLGVSSPQLDVPERGF 119

Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF K GPLDMRM    G SA+  + + + +++  +L   GEEKQ+ RIA AIV  R + P
Sbjct: 120 SFAKDGPLDMRMDPEMGESAAQWLARVSEREIADVLWTYGEEKQSRRIARAIVAYRANQP 179

Query: 185 FQTTQDLSSLIQKTVYFSK----NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
              T  L+ LI   +  +K     +RIHPATRSFQ +RI VN E+ +L  GL +A  AL+
Sbjct: 180 LLRTVQLAELIASVMLRTKFGACKSRIHPATRSFQGIRIHVNRELVDLEVGLEAALAALR 239

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300
            GG L+V+SFHSLEDR+VK+F  SR  KV      +P          +  + +   ++++
Sbjct: 240 PGGRLVVISFHSLEDRIVKQFI-SRHSKVPPTNRRLPEVQTFVPLLRMIGRAIKADEDEL 298

Query: 301 AFNRRSRSAKLR 312
             N R+RSA LR
Sbjct: 299 EVNPRARSAVLR 310


>gi|238760089|ref|ZP_04621239.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia
           aldovae ATCC 35236]
 gi|238701708|gb|EEP94275.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia
           aldovae ATCC 35236]
          Length = 320

 Score =  196 bits (499), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 123/310 (39%), Positives = 181/310 (58%), Gaps = 19/310 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN     + +D TFG GG+SR    ++G    +IA+DRDP A+   + 
Sbjct: 14  HTSVLLDEAVNGLNIRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDRDPQAIDAAKS 73

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  +FS+    FS L  YV +      +DGV+ DLGVSS Q+D  +RGFSF + GP
Sbjct: 74  IT---DSRFSIVHGPFSDLAHYVRELDLVGRIDGVLLDLGVSSPQLDDPERGFSFMRDGP 130

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G+SA+D + +A+  D+  +L   GEE+ A R+A AIV+R  + P   T++L
Sbjct: 131 LDMRMDPTRGLSAADWLMKASADDIAWVLKTFGEERFAKRLAKAIVERNLTQPMTRTKEL 190

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI     F + ++ HPATRSFQA+RI++N+E+EE+ + L  A + L   G L V+SFH
Sbjct: 191 ADLIANASPFREKHK-HPATRSFQAIRIYINSELEEIERALDGALEVLAPEGRLSVISFH 249

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306
           SLEDR+VK F    SR  +V A   +  +          +S+ K  ++P   +VA N R+
Sbjct: 250 SLEDRIVKNFIRHHSRGPQVPAGLPLTEAQLRSMGGRTLKSVGK--MMPPDAEVAENPRA 307

Query: 307 RSAKLRAGMR 316
           RS+ LR   R
Sbjct: 308 RSSVLRFAER 317


>gi|257063602|ref|YP_003143274.1| S-adenosyl-methyltransferase MraW [Slackia heliotrinireducens DSM
           20476]
 gi|256791255|gb|ACV21925.1| S-adenosyl-methyltransferase MraW [Slackia heliotrinireducens DSM
           20476]
          Length = 318

 Score =  196 bits (499), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 122/308 (39%), Positives = 181/308 (58%), Gaps = 16/308 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ- 75
           H PVLL + +  L+       +D+T G  G+S    K+    S +I +D+D  A+   + 
Sbjct: 7   HTPVLLAECLEHLHLQTQHTFVDSTLGGAGHSYEAAKLLGPDSLLIGIDQDQMALDAARK 66

Query: 76  --ETM-RDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
             ET+  D   +  L +  F  L D + +    G+D ++FDLGVSS QID   RGFSF++
Sbjct: 67  RLETLGEDAAPKLKLLRGNFGNLDDLLVEACVPGIDAILFDLGVSSPQIDFVSRGFSFKE 126

Query: 130 SGPLDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
             PLDMRM      I+A++++N  N ++LTRI+    +E+ ASRIA  IV  R++AP +T
Sbjct: 127 DAPLDMRMDPGNQTINAAELINTLNEQELTRIIYENSDERWASRIASFIVAARETAPIET 186

Query: 188 TQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           +  L  +I+  +  S +    HPA R+FQALRI VN+E+  L  GL +A + L  GG + 
Sbjct: 187 SGQLVDIIKAAIPASARRAGGHPAKRTFQALRIEVNSELTVLKSGLEAAIRWLNPGGRVA 246

Query: 247 VVSFHSLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           V+S+HSLEDR+VK  FA  SR+        +    A P V + IT+K ++PT+E++A N 
Sbjct: 247 VISYHSLEDRIVKNMFAEHSRTCTCPPELPVCVCGAKP-VLKVITRKPILPTEEEIANNP 305

Query: 305 RSRSAKLR 312
           R+RSAKLR
Sbjct: 306 RARSAKLR 313


>gi|318057546|ref|ZP_07976269.1| 16S rRNA m(4)C1402 methyltranserfase [Streptomyces sp. SA3_actG]
 gi|318081147|ref|ZP_07988479.1| 16S rRNA m(4)C1402 methyltranserfase [Streptomyces sp. SA3_actF]
          Length = 343

 Score =  196 bits (499), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 113/294 (38%), Positives = 172/294 (58%), Gaps = 12/294 (4%)

Query: 18  GDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVS 72
           G HVPV+L + + LL PA   PG V++D T G GG+S +       + ++ALDRD  A+ 
Sbjct: 29  GRHVPVMLRRCLDLLGPALAEPGAVVVDCTLGLGGHSEALLSTFPAARLVALDRDKEALR 88

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK 129
              E +  + E+  L  A + +L D +   G   V G++FDLGVSSMQ+D  DRGF++ +
Sbjct: 89  LAGERLAPFGERAMLAHAVYDELPDVLDRLGIPRVQGILFDLGVSSMQLDEADRGFAYAQ 148

Query: 130 SGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM   +G+SA++V+N     +L RIL   GEEKQA RI  A+V+ R+  PF  +
Sbjct: 149 DAPLDMRMDQTAGLSAAEVLNTYPPGELVRILRTYGEEKQARRIVSAVVREREKEPFARS 208

Query: 189 QDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
             L  LI++ +   +K    +PA R+FQALRI VN E+  L + + +A   L  GG + V
Sbjct: 209 ARLVELIREALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVNTLAVGGRIAV 268

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDV 300
           +++HSLEDRLVK+  ++ +         ++P    P   + +T+   +P +E+V
Sbjct: 269 LAYHSLEDRLVKQVLSTGATSTAPPGLPVVPERYQPR-LKLLTRGAELPAEEEV 321


>gi|182682489|ref|YP_001830649.1| S-adenosyl-methyltransferase MraW [Xylella fastidiosa M23]
 gi|182632599|gb|ACB93375.1| S-adenosyl-methyltransferase MraW [Xylella fastidiosa M23]
 gi|307578769|gb|ADN62738.1| S-adenosyl-methyltransferase MraW [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 328

 Score =  196 bits (499), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 117/306 (38%), Positives = 171/306 (55%), Gaps = 10/306 (3%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAV 71
           H    HVPVL  + +  L        LD TFG GG++R   +    G  ++ +D+DP A+
Sbjct: 13  HLSMTHVPVLYTQAMEGLRVVENGTYLDGTFGRGGHARGVLQQLGPGGRLLVMDKDPEAI 72

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +  +        +  +   +F+ L      + +DGV+FDLGVSS Q+D  +RGFSF K G
Sbjct: 73  AMAERAF-SCDPRVVIRHGSFALLAQLAAPQSLDGVLFDLGVSSPQLDVPERGFSFAKDG 131

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM    G SA+  + + + +++  +L   GEEKQ+ RIA AIV  R + P   T  
Sbjct: 132 PLDMRMDPEMGESAAQWLARVSEREIADVLWTYGEEKQSRRIARAIVAYRANQPLLRTVQ 191

Query: 191 LSSLIQ----KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           L+ LI     +T + +  +RIHPATRSFQ +RI VN E+ +L  GL +A  AL+ GG L+
Sbjct: 192 LAELIASVMLRTKFGACKSRIHPATRSFQGIRIHVNRELVDLEVGLEAALAALRPGGRLV 251

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+SFHSLEDR+VK+F  SR  KV      +P          +  + +   ++++  N R+
Sbjct: 252 VISFHSLEDRIVKQFI-SRHSKVPPTNRRLPEVQTFVPLLRMIGRAIKADEDELEVNPRA 310

Query: 307 RSAKLR 312
           RSA LR
Sbjct: 311 RSAVLR 316


>gi|116334056|ref|YP_795583.1| SAM-dependent methyltransferase for cell envelope biogenesis
           [Lactobacillus brevis ATCC 367]
 gi|122269260|sp|Q03QH0|RSMH_LACBA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|116099403|gb|ABJ64552.1| SAM-dependent methyltransferase for cell envelope biogenesis
           [Lactobacillus brevis ATCC 367]
          Length = 314

 Score =  196 bits (499), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 119/305 (39%), Positives = 179/305 (58%), Gaps = 14/305 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77
           HV VLL++ +A L   P  V +D T G GG+S+   +     ++ A D+D  A++  +E 
Sbjct: 6   HVTVLLKEAVAGLAIKPTGVYVDCTLGGGGHSQRILEQLTTGHLYAFDQDQTAITYNEEH 65

Query: 78  MRDYKE--QFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           ++ Y +  + +  ++ F Q+Q  + ++G   VDG+++DLGVSS Q D  DRGFS+Q   P
Sbjct: 66  LKTYLDAGKLTFIKSNFRQIQTELTERGITQVDGILYDLGVSSPQFDEADRGFSYQHDAP 125

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S  +SA  VVN+ +  DL RI    GEEK A  IA AI + R+ AP  TT  L
Sbjct: 126 LDMRMDQSQKLSAWIVVNEWSFNDLLRIFHRYGEEKFAKPIARAIERHREQAPIDTTGQL 185

Query: 192 SSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I++ +   ++ +  HPA + FQA+RI VN+E+  L   L  A   L   G + V++F
Sbjct: 186 VEIIKEGIPAAARRHGGHPAKKVFQAIRIAVNDELGALEDSLEQAVSLLDVNGRISVITF 245

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH---MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
            SLEDRLVK  F  +S  +  + H   +IP N  P  F+ +  K ++P++E++A N R+ 
Sbjct: 246 QSLEDRLVKTMFREQSS-LPELPHGIPVIPDNLQPD-FKLVNHKPILPSEEELAVNHRAH 303

Query: 308 SAKLR 312
           SAKLR
Sbjct: 304 SAKLR 308


>gi|71898210|ref|ZP_00680384.1| methyltransferase [Xylella fastidiosa Ann-1]
 gi|71731949|gb|EAO34006.1| methyltransferase [Xylella fastidiosa Ann-1]
          Length = 340

 Score =  196 bits (499), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 117/306 (38%), Positives = 171/306 (55%), Gaps = 10/306 (3%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAV 71
           H    HVPVL  + +  L        LD TFG GG++R   +    G  ++ +D+DP A+
Sbjct: 25  HLSMTHVPVLYTQAMEGLRVVENGTYLDGTFGRGGHARGVLQQLGPGGRLLVMDKDPEAI 84

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +  +        +  +   +F+ L      + +DGV+FDLGVSS Q+D  +RGFSF K G
Sbjct: 85  AMAERAF-SCDPRVVIRHGSFALLAQLAAPQSLDGVLFDLGVSSPQLDVPERGFSFAKDG 143

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM    G SA+  + + + +++  +L   GEEKQ+ RIA AIV  R + P   T  
Sbjct: 144 PLDMRMDPEMGESAAQWLARVSEREIADVLWTYGEEKQSRRIARAIVAYRANQPLLRTVQ 203

Query: 191 LSSLIQKTVYFSKN----NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           L+ LI   +  +K+    +RIHPATRSFQ +RI VN E+ +L  GL +A  AL+ GG L+
Sbjct: 204 LAELIASVMLRTKSGGCKSRIHPATRSFQGIRIHVNRELVDLEVGLEAALAALRPGGRLV 263

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+SFHSLEDR+VK+F  SR  KV      +P          +  + +   ++++  N R+
Sbjct: 264 VISFHSLEDRIVKQFI-SRHSKVPPTNRRLPEVQTFVPLLRMIGRAIKADEDELEVNPRA 322

Query: 307 RSAKLR 312
           RSA LR
Sbjct: 323 RSAVLR 328


>gi|85858517|ref|YP_460719.1| S-adenosyl-methyltransferase mraW [Syntrophus aciditrophicus SB]
 gi|123515897|sp|Q2LR39|RSMH_SYNAS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|85721608|gb|ABC76551.1| S-adenosyl-methyltransferase mraW [Syntrophus aciditrophicus SB]
          Length = 315

 Score =  196 bits (498), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 114/306 (37%), Positives = 178/306 (58%), Gaps = 9/306 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H PVLLE+ IA LN   G + +D T G GG++    +  +    ++ +D D  A+   ++
Sbjct: 9   HEPVLLEEAIASLNCRGGGIYVDGTVGGGGHAALILERSAPDGFLLGMDVDGDALQAAEK 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  +  + +L +A ++ ++  + D     VDG++ DLGVSS Q+D  +RGFS  K  PL
Sbjct: 69  RLMPFGRRKTLVKANYADMRKVLADLKILQVDGILLDLGVSSHQLDAAERGFSLLKDAPL 128

Query: 134 DMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM S +G SA DVVN  + ++L  I+   GEE  A RIA AI ++R+  P ++T  L+
Sbjct: 129 DMRMDSEAGRSAYDVVNTCSERELKDIIRKYGEEIMAGRIARAIAEKRKDTPIKSTTQLA 188

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           +++   +    ++ +IHPATR+FQALRI++NNE+  L + +  +   LK GG   ++SFH
Sbjct: 189 AIVAGALPGGFRHKKIHPATRTFQALRIYINNELSNLHRAIFDSTDCLKPGGRFSIISFH 248

Query: 252 SLEDRLVKKFFAS-RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLED LVK  F S   G +      + +       + IT+K + P +++V  N RSRSA+
Sbjct: 249 SLEDSLVKNGFRSLEKGCICPADMPVCACGQSPRLKVITRKPISPCRDEVEANPRSRSAR 308

Query: 311 LRAGMR 316
           LR   R
Sbjct: 309 LRTAER 314


>gi|254291793|ref|ZP_04962578.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
 gi|150422305|gb|EDN14267.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
          Length = 316

 Score =  196 bits (498), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 123/309 (39%), Positives = 174/309 (56%), Gaps = 20/309 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H+ VLL + I  L   P  + +D TFG GG+SR+   ++G    + ++DRDP A++  Q+
Sbjct: 7   HISVLLNESIEGLAIKPDGIYIDGTFGRGGHSRTILAQLGPEGRLYSIDRDPQAIAEAQK 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  +F++    FS + +Y         VDGV+FDLGVSS Q+D  +RGFSF K GP
Sbjct: 67  I---DDPRFTIVHGPFSGIAEYAQRYDLVGKVDGVLFDLGVSSPQLDDAERGFSFMKDGP 123

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---PFQTT 188
           LDMRM   SG+  S  + QA++ D+T ++   GE+K A RIA AIV+ R++    P   T
Sbjct: 124 LDMRMDPTSGMPVSAWLAQADLDDITWVIREFGEDKHARRIAKAIVEYRENELNEPLTRT 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ LI      S   + HPATR+FQA RI++N+E+EE+   LR A   L   G L V+
Sbjct: 184 SQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALRGASDILAPQGRLSVI 243

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSN-----AHPAVFQSITKKVVVPTQEDVAFN 303
           SFHSLEDR+VK+F    S     V H +P       A  +       K + P+ ++V  N
Sbjct: 244 SFHSLEDRMVKRFMRKESLGP-EVPHGLPLTQEQIRALGSAKMKTVGKALKPSDQEVELN 302

Query: 304 RRSRSAKLR 312
            RSRS+ LR
Sbjct: 303 PRSRSSVLR 311


>gi|330469297|ref|YP_004407040.1| 16S rRNA m(4)C1402 methyltranserfase [Verrucosispora maris
           AB-18-032]
 gi|328812268|gb|AEB46440.1| 16S rRNA m(4)C1402 methyltranserfase [Verrucosispora maris
           AB-18-032]
          Length = 394

 Score =  196 bits (498), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 117/326 (35%), Positives = 182/326 (55%), Gaps = 11/326 (3%)

Query: 2   ESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGK----VILDATFGAGGYSRSFCKM 57
           E    K +   +    G HVPVLLE+ + LL PA G+    V +DAT G  G++ +  + 
Sbjct: 18  EENKVKPVGVDMGELRGTHVPVLLERCLELLAPALGRGGRTVHVDATLGLAGHAEAVLQA 77

Query: 58  GSNVI--ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLG 112
               I   LDRD  A+   +  +  + ++  L  A + +L + +   G   VDG++FDLG
Sbjct: 78  HPETILVGLDRDTEALEHARVRLARFADRVHLEHAVYDELPEVLDRLGYPTVDGILFDLG 137

Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASR 171
           VSS+Q+D  DRGF++ +  PLDMRM  + G++A +VVN     +L R+L + GEEK A R
Sbjct: 138 VSSLQLDAPDRGFAYAQDAPLDMRMDQTRGVTAEEVVNTYTHPELARVLRVYGEEKFAGR 197

Query: 172 IAHAIVKRRQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQ 230
           IA AI++ R+     ++  L+ L+++++   ++    HPA R+FQALRI VN E+  L  
Sbjct: 198 IASAIIRERERVRITSSARLAELVRESIPAPARRTGGHPAKRTFQALRIEVNRELAVLET 257

Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK 290
            L +A   L  GG L+V+S+HSLEDRL K+  A R      +   +        F+ +++
Sbjct: 258 ALPAALDRLSVGGRLVVLSYHSLEDRLTKQALADRVRSTGPIDLPVELPGSEPTFRLLSR 317

Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMR 316
              +P + +VA N R+ S +LRA  R
Sbjct: 318 GAELPGEAEVAANPRAASVRLRAAER 343


>gi|195389917|ref|XP_002053618.1| GJ23252 [Drosophila virilis]
 gi|194151704|gb|EDW67138.1| GJ23252 [Drosophila virilis]
          Length = 364

 Score =  196 bits (498), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 131/332 (39%), Positives = 183/332 (55%), Gaps = 39/332 (11%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQE 76
           HVPVL +  I  L P      +D TFGAGG++R     C   + V ALDRDP A    Q 
Sbjct: 35  HVPVLCQTAIDYLQPVASGKYIDMTFGAGGHTRRLLDSCP-DTTVYALDRDPLAHELAQR 93

Query: 77  TMR--DYKEQFSLFQATFSQLQDY-----VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
             +  DY  +       FS+L        VP    DG++FD G SSMQ D   RGFS   
Sbjct: 94  MSQENDYAGRLVPLLGKFSELPQLLQSLDVPRHSFDGMLFDFGCSSMQFDEAARGFSIAH 153

Query: 130 SGPLDMRMSCS---GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP-F 185
           +GPLDMRM C     ISA+DV+ +A   DL RIL + GEEK A +IA AIV+ R +    
Sbjct: 154 NGPLDMRMDCGRSGSISAADVLARAEEADLARILRVYGEEKAAKKIARAIVEARSALQRI 213

Query: 186 QTTQDLSSLIQKTVYFSKN-NRI----HPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           +TT+ L+ L+   +   +  +R+    H AT++FQALRIFVNNE+ E+  G+  A++ L+
Sbjct: 214 ETTRQLADLVAAVLGDGQRLDRLQRPAHAATKTFQALRIFVNNELNEINYGMLLAQELLR 273

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVM-AVRHMIPSN--AH-----PAVFQS----- 287
           A G L+ ++FHSLED +VK+     +G V+  V + +P     H     P + +S     
Sbjct: 274 AQGRLVAITFHSLEDTIVKRHI---NGNVIEGVANPLPLKYCGHDLTHDPELLESFVQSN 330

Query: 288 ---ITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
              + + V+ P   ++A N RSRSAKLRA ++
Sbjct: 331 WRQLHRHVIQPDATEIARNSRSRSAKLRAAIK 362


>gi|17230846|ref|NP_487394.1| S-adenosyl-methyltransferase MraW [Nostoc sp. PCC 7120]
 gi|20138995|sp|Q8YRT9|RSMH_ANASP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|17132449|dbj|BAB75053.1| all3354 [Nostoc sp. PCC 7120]
          Length = 302

 Score =  196 bits (498), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 124/317 (39%), Positives = 177/317 (55%), Gaps = 26/317 (8%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFA 70
           I   I  H+PVL ++VI  L   PG   LD T G GG+SR   +   +V   A+D+D  A
Sbjct: 8   IEEPIFSHLPVLPQEVITGLVVRPGGRYLDVTVGGGGHSRLILEAAPDVKLTAVDQDGDA 67

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           ++  ++ + ++ EQ    ++ F+      P    DGV+ DLGVSS  +D  +RGFSF+  
Sbjct: 68  LTAAKQELAEFGEQVKFVRSNFAAYD--FPSTSFDGVLADLGVSSYHLDTPERGFSFRHQ 125

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM     +SA+DV+N  +  +L  I    GEE+ + RIA  IV++R   PF TT 
Sbjct: 126 ASLDMRMDQRQSLSAADVINDWDEVELANIFFKYGEERLSRRIARRIVEKR---PFHTTT 182

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L+  I  +V    +  RIHPATR FQALRI VN+E++ L   +  A KAL  GG + ++
Sbjct: 183 ELAEAIASSVPPKYRYGRIHPATRVFQALRIVVNDELKSLETFIEKAPKALVPGGRIAII 242

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDRLVK     R+  ++ V               +TKK ++ T +++A N RSRS
Sbjct: 243 SFHSLEDRLVKHGL--RNSPLLKV---------------LTKKPIIATDDEIANNPRSRS 285

Query: 309 AKLRAGMRTVERSIEDD 325
           AKLR   +  E   ED+
Sbjct: 286 AKLRIAEKQAETGDEDN 302


>gi|32129733|sp|Q87AF2|RSMH_XYLFT RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263506475|sp|B2I9C0|RSMH_XYLF2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 313

 Score =  196 bits (498), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 116/301 (38%), Positives = 169/301 (56%), Gaps = 10/301 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HVPVL  + +  L        LD TFG GG++R   +    G  ++ +D+DP A++  + 
Sbjct: 3   HVPVLYTQAMEGLRVVENGTYLDGTFGRGGHARGVLQQLGPGGRLLVMDKDPEAIAMAER 62

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
                  +  +   +F+ L      + +DGV+FDLGVSS Q+D  +RGFSF K GPLDMR
Sbjct: 63  AF-SCDPRVVIRHGSFALLAQLAAPQSLDGVLFDLGVSSPQLDVPERGFSFAKDGPLDMR 121

Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M    G SA+  + + + +++  +L   GEEKQ+ RIA AIV  R + P   T  L+ LI
Sbjct: 122 MDPEMGESAAQWLARVSEREIADVLWTYGEEKQSRRIARAIVAYRANQPLLRTVQLAELI 181

Query: 196 QKTVYFSK----NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
              +  +K     +RIHPATRSFQ +RI VN E+ +L  GL +A  AL+ GG L+V+SFH
Sbjct: 182 ASVMLRTKFGACKSRIHPATRSFQGIRIHVNRELVDLEVGLEAALAALRPGGRLVVISFH 241

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+VK+F  SR  KV      +P          +  + +   ++++  N R+RSA L
Sbjct: 242 SLEDRIVKQFI-SRHSKVPPTNRRLPEVQTFVPLLRMIGRAIKADEDELEVNPRARSAVL 300

Query: 312 R 312
           R
Sbjct: 301 R 301


>gi|226943445|ref|YP_002798518.1| S-adenosyl-methyltransferase MraW [Azotobacter vinelandii DJ]
 gi|263446785|sp|C1DQ91|RSMH_AZOVD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|226718372|gb|ACO77543.1| S-adenosyl-methyltransferase MraW [Azotobacter vinelandii DJ]
          Length = 313

 Score =  196 bits (498), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 121/305 (39%), Positives = 184/305 (60%), Gaps = 16/305 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSNVIAL--DRDPFAVSCGQE 76
           H+ VLLE+ +  L+   G   LD TFG GG+SR    ++G+  I L  D+DP AV+ G  
Sbjct: 7   HITVLLEEAVDALSIREGGCYLDGTFGRGGHSRLILGRLGAGGILLGFDKDPQAVAAGL- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            +     +F + Q +F++L D +  +G    V GV+ DLGVSS Q+D  +RGFSF   GP
Sbjct: 66  ALATEDARFVIVQRSFAELADEMKMRGLVGKVSGVLLDLGVSSPQLDDPERGFSFLNDGP 125

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM    G+SA++ + QA+ +++  +    GEE+ A R+A A+V+RRQ  PF+ T DL
Sbjct: 126 LDMRMDPGRGLSAAEWLAQASCEEIAHVFKDYGEERFARRMAQAVVQRRQERPFERTADL 185

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++       +  + +PATR+FQ LRI +NNE+ +L QGL +A + L+ GG L V+SFH
Sbjct: 186 AQVLAAANPAWEKGK-NPATRAFQGLRIHINNELGDLEQGLDAALEVLEVGGRLAVISFH 244

Query: 252 SLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQSITKKVVVP---TQEDVAFNRRSR 307
           SLEDR+VK+F   +  G+   +   +P    PA F+   K +  P   ++ ++  N R+R
Sbjct: 245 SLEDRIVKRFMRRQVKGEADKLPRDLP--IRPAAFEPRLKLIGKPRYASESELKTNPRAR 302

Query: 308 SAKLR 312
           SA +R
Sbjct: 303 SAIMR 307


>gi|86608801|ref|YP_477563.1| S-adenosyl-methyltransferase MraW [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|123502541|sp|Q2JLV1|RSMH_SYNJB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|86557343|gb|ABD02300.1| S-adenosyl-methyltransferase MraW [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 319

 Score =  196 bits (498), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 128/313 (40%), Positives = 170/313 (54%), Gaps = 35/313 (11%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78
           H  VL E+V+A L P  G + LD T G GG+S +  + G+  V+ LDRDP A+   Q   
Sbjct: 24  HDSVLTEEVMAYLQPQGGGIFLDVTLGGGGHSLALLRGGAARVVGLDRDPAALQAAQARF 83

Query: 79  RDYK---EQFSLFQATFS----QLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSF 127
                   +  L+   F+    Q   +  ++G     DG+V DLGVSS Q+DC +RGFSF
Sbjct: 84  AAEGIPGSRIQLWHLNFADFDLQQHGFRDEQGQGIPFDGIVADLGVSSPQLDCPERGFSF 143

Query: 128 QKSGPLDMRMSCSGI--SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           +  GPLDMRM  S    +A+D VN   V++L  I    GEE+ A RIAH I    Q+ P 
Sbjct: 144 RGEGPLDMRMDPSAAQETAADWVNHRPVEELIEIFTRYGEERFARRIAHHI---EQARPL 200

Query: 186 QTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
            TT  L+ ++ + V   ++  RIHPATR FQALRI VN E+E L   L  A   LK GG 
Sbjct: 201 ATTTQLAQVVWQAVPPAARRGRIHPATRVFQALRIAVNRELEALETLLAQAPTWLKPGGR 260

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           L V+SFHSLEDRLVK  F  R  +                +Q +T K + P++ +   N 
Sbjct: 261 LAVISFHSLEDRLVKWAF-RRDPR----------------WQVLTPKPLSPSELERQRNP 303

Query: 305 RSRSAKLRAGMRT 317
           R+RSAKLR   R+
Sbjct: 304 RARSAKLRVAARS 316


>gi|46445945|ref|YP_007310.1| S-adenosyl-methyltransferase [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|51316230|sp|Q6MEG4|RSMH_PARUW RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|46399586|emb|CAF23035.1| probable S-adenosyl-methyltransferase [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 316

 Score =  196 bits (498), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 116/303 (38%), Positives = 176/303 (58%), Gaps = 11/303 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCGQE 76
           H  VLLE+VI    P   KV +D T GAGG++ +  +    +   + +D+DP A++   +
Sbjct: 8   HRSVLLEEVIEAFQPVQLKVFIDGTLGAGGHAEAILEHHPEIELYLGIDQDPNALNIANK 67

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  +K++  L Q  FSQ   ++ + G   +DG++ DLGVSSMQ+D  +RGFSF K GPL
Sbjct: 68  RLEKWKQKILLKQGNFSQFDIFLKEIGFSSMDGLLVDLGVSSMQLDQPERGFSFSKDGPL 127

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  G ++A+D+VN  +  DL +I    GEEK+    A  IV+ RQ     TT DL+
Sbjct: 128 DMRMNPEGKLTAADIVNTWSEHDLGKIFRDYGEEKKWRLAARTIVQARQVKQILTTTDLA 187

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +L++    ++    I+P T  FQALRI VN E++ L Q +      LK GG + V+SFHS
Sbjct: 188 NLLKPAFAWNPKKGINPLTLIFQALRICVNRELDVLEQLVSKTFDYLKPGGRVAVISFHS 247

Query: 253 LEDRLVK---KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           LEDR+VK   +  AS   +   +   +  +  P V + + +K + P ++++  N RSRSA
Sbjct: 248 LEDRIVKNELRLAASDKWETTGLGSGLFRDKKP-VAKLVNRKPICPHEKEIKENPRSRSA 306

Query: 310 KLR 312
           K R
Sbjct: 307 KFR 309


>gi|302344204|ref|YP_003808733.1| S-adenosyl-methyltransferase MraW [Desulfarculus baarsii DSM 2075]
 gi|301640817|gb|ADK86139.1| S-adenosyl-methyltransferase MraW [Desulfarculus baarsii DSM 2075]
          Length = 316

 Score =  196 bits (498), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 121/313 (38%), Positives = 178/313 (56%), Gaps = 20/313 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQE 76
           H PVLL + +  + P PG + +D T GAGG++ +    C     ++ LDRD  A++    
Sbjct: 5   HRPVLLAETLRAMQPKPGGIYVDGTLGAGGHAAAILEACGPTGRLLGLDRDAQALALATA 64

Query: 77  TMRDYKE-QFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            +  + + +  L QA+F ++   +   GV   DG++ DLGVSSMQ+D G RGFSF   GP
Sbjct: 65  NLAGFDQARLRLTQASFDEIGQCLSAWGVAACDGILLDLGVSSMQLDQGQRGFSFMHDGP 124

Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           LDMRM  SG  A+++V  ++   LT I   LGEE  A R A A+++ R+  P  +T  L+
Sbjct: 125 LDMRMGQSGPGAAELVADSDQNRLTAIFRDLGEEPLARRYAQAVIEARRQGPIVSTGRLA 184

Query: 193 SLIQKTVYFS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           ++I+ +   +  + ++IHPATR FQALR+ VN+E+  L + L  A   L  GG+L V+S+
Sbjct: 185 AVIEASTPAAVRRKSKIHPATRVFQALRLAVNDELGRLERFLAGAPAWLNPGGVLAVISY 244

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV------FQSITKKVVVPTQEDVAFNR 304
           HSLEDR VK     RS +  A     P +    V      F   + K + P+  +VA N 
Sbjct: 245 HSLEDRRVK-----RSLRAAANPCTCPPDLPRCVCGRRPLFDLPSHKAITPSAVEVAQNP 299

Query: 305 RSRSAKLRAGMRT 317
           RSRSA+LR  +RT
Sbjct: 300 RSRSARLRVAVRT 312


>gi|239907971|ref|YP_002954712.1| S-adenosyl-methyltransferase MraW [Desulfovibrio magneticus RS-1]
 gi|263446299|sp|C4XK86|RSMH_DESMR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|239797837|dbj|BAH76826.1| S-adenosyl-methyltransferase MraW [Desulfovibrio magneticus RS-1]
          Length = 324

 Score =  196 bits (498), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 123/308 (39%), Positives = 170/308 (55%), Gaps = 11/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H PVLL +VI LL   PG  ILDAT G GG+SR   +       V+ LDRD  A+S    
Sbjct: 7   HKPVLLREVIELLGIRPGMKILDATVGLGGHSRGMLEAAGGEGQVLGLDRDREALSEAGR 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  Y ++  L +   S+    + + G   VD  + D G+SS+Q+D  +RGF F   GPL
Sbjct: 67  WLAPYGDRVRLVRTRSSRFPAVLAEAGWEKVDAALLDAGMSSLQLDDPERGFGFLHDGPL 126

Query: 134 DMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           DMRM     G +A  +VN A+   L  I+   GE+ QA RIA AIV  R+     TT  L
Sbjct: 127 DMRMGAEDGGETAEGLVNLASYARLCEIIREYGEDPQAGRIARAIVSVREKEAITTTARL 186

Query: 192 SSLIQKT--VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           + ++ +     +    R HPATR+FQALR+ VN E+ EL   L++    L  GG + V+S
Sbjct: 187 AEVVWQAYPAKWRATARQHPATRTFQALRMAVNEELAELEAFLKAIPDHLAPGGRVAVIS 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDRLVK+ F + +   +  R  ++    H A  + +TKK V+  +E+V  N R+RS
Sbjct: 247 FHSLEDRLVKRAFRAEATDCICPREQVVCVCGHRARLRILTKKPVMAGEEEVRDNSRARS 306

Query: 309 AKLRAGMR 316
           AKLR   R
Sbjct: 307 AKLRVAER 314


>gi|166365785|ref|YP_001658058.1| S-adenosyl-methyltransferase MraW [Microcystis aeruginosa NIES-843]
 gi|263456493|sp|B0JKS7|RSMH_MICAN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|166088158|dbj|BAG02866.1| S-adenosyl-L-methionine-dependent methyltransferase [Microcystis
           aeruginosa NIES-843]
          Length = 292

 Score =  196 bits (498), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 121/303 (39%), Positives = 179/303 (59%), Gaps = 29/303 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77
           H+ VL +++IA LN  PG   LD T G GG+SR   +    + V A+DRD  A+   + +
Sbjct: 7   HISVLSQELIAGLNIQPGGHYLDLTLGGGGHSRLLLEAHPETTVTAIDRDQSALEAAKIS 66

Query: 78  MRDYKE-QFSLFQATFSQLQDYV-PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           +  Y + + +L+   F+   DY   +   DG++ DLGVSS Q D  +RGFSF+ +  LDM
Sbjct: 67  LAPYLDSRLTLWWGNFA---DYDGQNSSFDGIIADLGVSSPQFDQSERGFSFRHTAALDM 123

Query: 136 RMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM  C  ++A+D++N  + K+L  +    GEE+ +  IA +IV++R   PF TT +L+++
Sbjct: 124 RMDRCQSLTAADIINHWHEKELADLFYQYGEERLSRPIARSIVQKR---PFTTTTELAAV 180

Query: 195 IQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           I  +V  S +  RIHPATR FQALRI VN E++ L Q L  A   LK+ G++ ++SFHSL
Sbjct: 181 IASSVPASYRYGRIHPATRVFQALRIAVNQELDSLQQLLDQAPHWLKSRGIIAMISFHSL 240

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           EDRL+K  F  R    + +               ITKK ++P++E+ A N RSRSAKLR 
Sbjct: 241 EDRLIKYGF--RENNSLKI---------------ITKKPIIPSREEQAKNPRSRSAKLRI 283

Query: 314 GMR 316
             +
Sbjct: 284 AQK 286


>gi|296331089|ref|ZP_06873563.1| S-adenosyl-methyltransferase MraW [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305674244|ref|YP_003865916.1| S-adenosyl-dependent methyltransferase active on membrane-located
           substrates [Bacillus subtilis subsp. spizizenii str.
           W23]
 gi|296151733|gb|EFG92608.1| S-adenosyl-methyltransferase MraW [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305412488|gb|ADM37607.1| S-adenosyl-dependent methyltransferase active on membrane-located
           substrates [Bacillus subtilis subsp. spizizenii str.
           W23]
          Length = 311

 Score =  196 bits (498), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 118/303 (38%), Positives = 175/303 (57%), Gaps = 11/303 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H  VLL + +  LN  P    +D T G  G+S    +  S    +IA D+D  A+   +E
Sbjct: 4   HKTVLLRETVDGLNIKPDGTYVDCTLGGAGHSTYLLQQLSEKGRLIAFDQDDMALQHAKE 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + DYK Q  L ++ F  L++ + ++G   VDG++FDLGVSS Q+D  +RGFS+    PL
Sbjct: 64  ALSDYKGQLILIKSNFRYLKECLKEQGITEVDGILFDLGVSSPQLDTPERGFSYHHDAPL 123

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  S  ++A +VVN    +DL RI    GEEK + +IA  I + R  +P QTT  L 
Sbjct: 124 DMRMDQSATLTAKEVVNDWRYEDLVRIFFKYGEEKFSKQIARKIEEARIKSPIQTTGQLV 183

Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            LI+  +   ++ +  HPA R FQA+RI VN+E++   + L  A + LK GG + V++FH
Sbjct: 184 DLIKDAIPAPARRSGGHPAKRVFQAIRIAVNDELKVFEEALEQAIEVLKPGGRVSVITFH 243

Query: 252 SLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+ K  F  +S   ++     +IP    P + + IT+K +  +QE++  N R+RSA
Sbjct: 244 SLEDRICKSTFKEKSSLPELPPGLPVIPEEFEPEL-KLITRKPITASQEELEENNRARSA 302

Query: 310 KLR 312
           KLR
Sbjct: 303 KLR 305


>gi|75909403|ref|YP_323699.1| S-adenosyl-methyltransferase MraW [Anabaena variabilis ATCC 29413]
 gi|123608960|sp|Q3M882|RSMH_ANAVT RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|75703128|gb|ABA22804.1| methyltransferase [Anabaena variabilis ATCC 29413]
          Length = 305

 Score =  196 bits (497), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 127/329 (38%), Positives = 184/329 (55%), Gaps = 28/329 (8%)

Query: 1   MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN 60
           M+S S K++S  +      H+PVL ++V+  L    G   LDAT G GG+SR   +   +
Sbjct: 1   MKSHSAKSLS--VEEATFSHLPVLPQEVVTGLAVRSGGHYLDATVGGGGHSRLILEAAPD 58

Query: 61  V--IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQI 118
           V   A+D+D  A++  ++ + ++ EQ    ++ F+  +   P    DGV+ DLGVSS  +
Sbjct: 59  VRLTAVDQDGDALTAAKKELAEFGEQVKFVRSNFAAYE--FPVASFDGVLADLGVSSYHL 116

Query: 119 DCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177
           D  +RGFSF+    LDMRM     +SA+DV+N  +  +L  I    GEE+ + RIA  IV
Sbjct: 117 DTPERGFSFRHQANLDMRMDQRQSLSAADVINDWDEVELANIFFKYGEERLSRRIARRIV 176

Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236
           ++R   PF TT +L+  I  +V    +  RIHPATR FQALRI VN+E++ L   L  A 
Sbjct: 177 EKR---PFHTTTELAEAIASSVPPKYRYARIHPATRVFQALRIVVNDELKSLETFLEKAP 233

Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296
           KAL  GG + ++SFHSLEDRLVK    +            PS       + +TKK ++ T
Sbjct: 234 KALVPGGRIAIISFHSLEDRLVKHGLRNS-----------PS------LKVLTKKPIIAT 276

Query: 297 QEDVAFNRRSRSAKLRAGMRTVERSIEDD 325
           + ++A N RSRSAKLR   +  E   ED+
Sbjct: 277 EAEIANNPRSRSAKLRIAEKKAEMGQEDN 305


>gi|238786715|ref|ZP_04630516.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia
           frederiksenii ATCC 33641]
 gi|238725083|gb|EEQ16722.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia
           frederiksenii ATCC 33641]
          Length = 320

 Score =  196 bits (497), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 124/309 (40%), Positives = 182/309 (58%), Gaps = 17/309 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN     + +D TFG GG+SR    ++G    +IA+DRDP A+   + 
Sbjct: 14  HTSVLLDEAVNGLNIRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDRDPQAIEAAKS 73

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  +FS+    FS L  YV +      +DGV+ DLGVSS Q+D  +RGFSF + GP
Sbjct: 74  IT---DPRFSIVHGPFSDLAHYVRELDLVGRIDGVLLDLGVSSPQLDDPERGFSFMRDGP 130

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G+SA+D + +A+  D+  +L   GEE+ A R+A AIV+R  + P   T++L
Sbjct: 131 LDMRMDPTRGLSAADWLMKASADDIAWVLKTFGEERFAKRLAKAIVERNLTQPMTRTKEL 190

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI     F + ++ HPATRSFQA+RI++N+E+EE+ + L  A + L   G L V+SFH
Sbjct: 191 ADLIANASPFREKHK-HPATRSFQAIRIYINSELEEIERALDGALEVLAPEGRLSVISFH 249

Query: 252 SLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKV--VVPTQEDVAFNRRSR 307
           SLEDR+VK F    SR  +V A   +  +       +S+ K V  ++P   +VA N R+R
Sbjct: 250 SLEDRIVKNFIRHHSRGPQVPAGLPLTEAQLRSMGGRSL-KSVGKMMPPDAEVAENPRAR 308

Query: 308 SAKLRAGMR 316
           S+ LR   R
Sbjct: 309 SSVLRFAER 317


>gi|297616973|ref|YP_003702132.1| S-adenosyl-methyltransferase MraW [Syntrophothermus lipocalidus DSM
           12680]
 gi|297144810|gb|ADI01567.1| S-adenosyl-methyltransferase MraW [Syntrophothermus lipocalidus DSM
           12680]
          Length = 307

 Score =  196 bits (497), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 121/301 (40%), Positives = 177/301 (58%), Gaps = 8/301 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMG--SNVIALDRDPFAVSCGQE 76
           HVPVLLE+ +++L   P  V +D T G GG+      K+G  + +I +D+D  A+   ++
Sbjct: 2   HVPVLLEEAVSMLALQPDGVYVDCTVGGGGHLACLVQKLGEKATIIGIDKDAKALEEARK 61

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + +   +  L    F +LQ  +   G+    G+V DLGVSS Q+D   RGFS+Q+ GPL
Sbjct: 62  KLANVSSKLILIHGDFRRLQVILKMHGISEIHGIVLDLGVSSFQLDDASRGFSYQEEGPL 121

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+    +SA  +VN+ + + L  I+  LGEE+ A RIA  IV+ RQ  P  TT +L 
Sbjct: 122 DMRMNTDQQLSAWHLVNEWSEERLALIIRELGEERYARRIAREIVRERQQRPINTTFELV 181

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I++ V        HPA R+FQALRI VN E+E L + L  A + L + G + V++FHS
Sbjct: 182 EVIKRAVPAQAKKDKHPARRTFQALRIAVNEELEALEEVLPQAVEVLASEGRIAVITFHS 241

Query: 253 LEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK FF   S G +      + +  H A  + +TK+ + PT+ ++A N RSRSAKL
Sbjct: 242 LEDRIVKTFFKRESLGCLCPSDQPVCTCNHRARLKIVTKRPITPTEAELARNPRSRSAKL 301

Query: 312 R 312
           R
Sbjct: 302 R 302


>gi|220909120|ref|YP_002484431.1| S-adenosyl-methyltransferase MraW [Cyanothece sp. PCC 7425]
 gi|263446188|sp|B8HTI9|RSMH_CYAP4 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|219865731|gb|ACL46070.1| S-adenosyl-methyltransferase MraW [Cyanothece sp. PCC 7425]
          Length = 294

 Score =  196 bits (497), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 128/303 (42%), Positives = 173/303 (57%), Gaps = 32/303 (10%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77
           H+PVL + VI  LN  PG   LDAT G GG+SR   +    S V ALDRD  A+   +  
Sbjct: 12  HIPVLSQAVIQGLNLRPGGHYLDATVGGGGHSRLILEAAPESQVTALDRDQQALQAARSA 71

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++ Y E+   +Q+ F+   DY  + G    DG++ DLGVSS Q+D   RGFSF+   PLD
Sbjct: 72  LQPYGERVQFYQSNFA---DY--ESGSLRFDGILADLGVSSAQLDQPQRGFSFRADAPLD 126

Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM     ++A+++VN A+ ++L  I    GEE+ A RIA  IV+ R   P  TT  L+S
Sbjct: 127 MRMDQRQSLTAAELVNTASAEELADIFYYYGEERFARRIARRIVQHR---PLYTTAQLAS 183

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           L+ + +  S++  IHPATR FQALRI VN E+E L Q L  +   L  GG L V+SFHSL
Sbjct: 184 LVSRALP-SRSQSIHPATRVFQALRIAVNRELESLEQFLERSPHWLVTGGRLAVISFHSL 242

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           EDR VK      S                 + Q +TKK ++P+ E+++ N R+RSAKLR 
Sbjct: 243 EDRRVKHGLRDHS-----------------LLQVLTKKPILPSSEEISANPRARSAKLRL 285

Query: 314 GMR 316
             R
Sbjct: 286 AQR 288


>gi|8134827|sp|O69560|RSMH_MYCLE RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263460319|sp|B8ZQP2|RSMH_MYCLB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|3080481|emb|CAA18676.1| hypothetical protein MLCB268.10c [Mycobacterium leprae]
          Length = 340

 Score =  196 bits (497), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 120/317 (37%), Positives = 174/317 (54%), Gaps = 20/317 (6%)

Query: 20  HVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPF 69
           HVPV  ++ + LL PA           +++DAT G GG++  F     G  +I LDRDP 
Sbjct: 10  HVPVFAQRCVTLLAPALTRHHADGSNAILVDATLGVGGHAERFLTEFPGLRLIGLDRDPS 69

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQ------DYVPDKGVDGVVFDLGVSSMQIDCGDR 123
           A+   +  +  + ++ +L    +  L        Y   + VDGV+FDLGVSSMQ+DC +R
Sbjct: 70  ALDIARTRLMRFADRVTLIHTRYDNLAVALNKFGYAAVESVDGVLFDLGVSSMQLDCAER 129

Query: 124 GFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GFS+ +  PLDMRM   S +SA+D+VN  +   L  IL   GEE+ A RIA  IV+RR  
Sbjct: 130 GFSYAQDVPLDMRMDPWSPVSAADIVNNYDEAALADILRRYGEERFARRIAAHIVRRRAH 189

Query: 183 APFQTTQDLSSLIQKTVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
            PF +T +L +L+ + +  +   RI  HPA R+FQALRI VN+E+  L+  L +A  AL 
Sbjct: 190 TPFTSTAELVALLYQAIP-APARRIGGHPAKRTFQALRIAVNDELNSLSNVLPAALDALT 248

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300
             G L+V+++ SLEDR+VK+ FA            I    H   F+ +T+        ++
Sbjct: 249 VAGRLVVLAYQSLEDRIVKRVFADAVSSRTPAGLPIELPGHGPRFRLLTRGAEHADAAEI 308

Query: 301 AFNRRSRSAKLRAGMRT 317
             N RS + +LRA  RT
Sbjct: 309 ECNPRSAAVRLRALQRT 325


>gi|307211743|gb|EFN87738.1| Putative S-adenosyl-L-methionine-dependent methyltransferase
           CG14683 [Harpegnathos saltator]
          Length = 325

 Score =  196 bits (497), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 122/325 (37%), Positives = 181/325 (55%), Gaps = 34/325 (10%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQETMRDY 81
           + ++V++ + P+PGK  +D TFGAGG++    +   ++   ALDRD  A    Q+  + Y
Sbjct: 1   MAQEVLSYIEPSPGKTYIDMTFGAGGHATKLLEHSPDIKIFALDRDSVAHEYAQKLSQKY 60

Query: 82  KEQFSLFQATFSQL-----QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
             Q       FS+L     Q  +    +DG +FD G SSMQ D G RGFS  K GPLDMR
Sbjct: 61  PGQVIPLLGKFSELPQLLKQHNIGRNSIDGFLFDFGCSSMQFDIGIRGFSLSKDGPLDMR 120

Query: 137 MS---CSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK-RRQSAPFQTTQDL 191
           M    CSG  +A+DV+ +A  +DL RI+   G+EK+A +IA AI++ R      +TT++L
Sbjct: 121 MDGFRCSGQPTAADVLERATEEDLARIIKFYGQEKRAKKIARAIIEARYMFRKLETTREL 180

Query: 192 SSLIQKTV--YFSKNNR---IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           + LI+ T+     K+N     H AT++FQALRIFVNNE+ E+   +  A   LK  G LI
Sbjct: 181 AELIESTLSDEIRKDNLGRFSHNATKTFQALRIFVNNELNEINYAMLLARIYLKVTGRLI 240

Query: 247 VVSFHSLEDRLVKKFFA---------------SRSGKVMAVRHMIPSNAHPAVFQSITKK 291
            +SFHSLED +VK+  +               +  GK+     +      P  ++ + K 
Sbjct: 241 TISFHSLEDTIVKRHISGNITDNVANTISLKYANPGKIFDANELEMLTQTP--WKMMHKH 298

Query: 292 VVVPTQEDVAFNRRSRSAKLRAGMR 316
           V++PT E++  N R+RSAK RA ++
Sbjct: 299 VLLPTAEEIETNPRARSAKFRAILK 323


>gi|30248986|ref|NP_841056.1| methyltransferase family protein [Nitrosomonas europaea ATCC 19718]
 gi|42559461|sp|Q82VT1|RSMH_NITEU RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|30138603|emb|CAD84894.1| Methyltransferase family [Nitrosomonas europaea ATCC 19718]
          Length = 317

 Score =  196 bits (497), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 120/306 (39%), Positives = 179/306 (58%), Gaps = 16/306 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQE 76
           HVPVLLE+    LN     + +DATFG GG+SR    ++G +  +IA D+DP A+S  + 
Sbjct: 2   HVPVLLEEAADALNIRADGIYVDATFGRGGHSRLILSRLGESGRLIAFDKDPAAISAAR- 60

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           ++RD  E+F     +++Q++  +    V   DG++ DLGVSS+Q+D   RGFSF+  GPL
Sbjct: 61  SIRD--ERFQAVHGSYAQIRTALESLSVSRIDGILLDLGVSSIQLDEASRGFSFRHDGPL 118

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  S G +A++ +      +L  ++   GEE+ A +IA AIV  +   P  TT  L+
Sbjct: 119 DMRMDSSRGKTAAEWLATVTETELKEVIRTYGEERYAGQIAGAIVMAQTRQPIVTTFQLA 178

Query: 193 SLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
            ++   V  +  ++ R HPATR+FQA+RI +N E+EEL+  L    + L A G L+V+SF
Sbjct: 179 EIVAAVVRKFGHRDGRQHPATRTFQAIRIHLNQELEELSVTLPQCVELLNANGRLVVISF 238

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMI----PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           HSLEDR+VK+F   ++G     R +      S  H      I  K + P + +VA N R+
Sbjct: 239 HSLEDRIVKRFMRMQAGTDTLPRKLPVRDEESRMHSRQTLQIIGKKIRPGENEVAANPRA 298

Query: 307 RSAKLR 312
           RSA +R
Sbjct: 299 RSAVMR 304


>gi|291166340|gb|EFE28386.1| S-adenosyl-methyltransferase MraW [Filifactor alocis ATCC 35896]
          Length = 310

 Score =  196 bits (497), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 114/305 (37%), Positives = 177/305 (58%), Gaps = 8/305 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77
           H PV+L + I +LN  P  + +D T G  G+S    K      +IA D+D  A+   +  
Sbjct: 5   HKPVMLNECIDMLNIVPSGIYVDGTLGGAGHSLEIVKRLDSGKLIAFDQDIEAIKNAKIK 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++ Y+++  L    F  ++  + D  +   +G++ DLGVSS Q+D  +RGFS++   PLD
Sbjct: 65  LKSYEDKVILIHDNFRNIKKSLEDIDIFRINGLLLDLGVSSYQLDSPERGFSYRYDAPLD 124

Query: 135 MRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM+  S ISA  +VN  + +DL RI+   GEEK ASRIA  IV+ R   P  TT +L  
Sbjct: 125 MRMNQSSQISAKYIVNTYSEEDLKRIIRDYGEEKWASRIAQFIVEERMKKPIDTTGELVQ 184

Query: 194 LIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +I+  +   ++    HPA R+FQA+RI  N+E++ +   L SA + L  GG++ V++FHS
Sbjct: 185 IIKAAIPKKAREEEQHPAKRTFQAIRIETNHELDVIHDVLESAVELLLPGGVISVITFHS 244

Query: 253 LEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK FF   S G + +    +    H A  +   +K +VP++E++  N RSRSAK+
Sbjct: 245 LEDRIVKNFFRDESTGCICSPEIPVCVCNHQARLRLAHRKPLVPSEEELRENPRSRSAKV 304

Query: 312 RAGMR 316
           R  ++
Sbjct: 305 RGAIK 309


>gi|299139518|ref|ZP_07032692.1| S-adenosyl-methyltransferase MraW [Acidobacterium sp. MP5ACTX8]
 gi|298598446|gb|EFI54610.1| S-adenosyl-methyltransferase MraW [Acidobacterium sp. MP5ACTX8]
          Length = 324

 Score =  195 bits (496), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 130/310 (41%), Positives = 180/310 (58%), Gaps = 28/310 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HVPVLLE+ +  L   PG V +DAT G GG+S +  +       +I  DRDP A++  Q 
Sbjct: 20  HVPVLLEESLKYLKVRPGGVYVDATLGLGGHSAAIARQLGGAGKLICFDRDPEAMAKAQA 79

Query: 77  TMRDYKE-------QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
            +    E       Q       FS++ + V    +DG++ D GVSS+Q+D   RGFSF+ 
Sbjct: 80  RLAAVAEELGPEMPQVRYVPRAFSEIDEEVEPNSLDGLLADFGVSSLQLDEAHRGFSFRT 139

Query: 130 SGPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM S S ++A  VVNQA+ +DL  ++   GEE+++ RIA AIV+ R   P +TT
Sbjct: 140 DGPLDMRMDSRSELTAQQVVNQADEEDLANLIYEFGEERRSRRIARAIVRAR---PIETT 196

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ +I       K ++IHPATR+FQALRI VN+EI ++   L SAE  LK GG ++++
Sbjct: 197 AELARVISAVTPSMKGDKIHPATRTFQALRIRVNDEIGQIQSLLHSAESLLKPGGRVVLI 256

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDR VK  F  R G            A     + +TKK VV  +++   N RSRS
Sbjct: 257 SFHSLEDRPVKDAF--REG------------AKAGRLEILTKKPVVAGEQESLRNPRSRS 302

Query: 309 AKLRAGMRTV 318
           AKLRA  + +
Sbjct: 303 AKLRAAEKVL 312


>gi|219870383|ref|YP_002474758.1| S-adenosyl-methyltransferase MraW [Haemophilus parasuis SH0165]
 gi|263456048|sp|B8F3A8|RSMH_HAEPS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|219690587|gb|ACL31810.1| S-adenosyl-methyltransferase MraW involved in cell envelope
           biogenesis [Haemophilus parasuis SH0165]
          Length = 312

 Score =  195 bits (496), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 123/306 (40%), Positives = 179/306 (58%), Gaps = 18/306 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQE 76
           H+ VLL + +  L   P  + +D TFG GG+SR    K+G    +IA+DRDP A++    
Sbjct: 7   HITVLLHEAVDGLAIKPNGIYVDGTFGRGGHSRLILSKLGEQGRLIAIDRDPRAIAEAN- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           T+ D +  F +  + FS + D   +      +DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 66  TITDPR--FQIVHSAFSSIPDICDELNLVGKIDGILLDLGVSSPQLDEAERGFSFMRDGP 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP--FQTTQ 189
           LDMRM  + G+SA + + Q +V DL  +L   GEE+ A RIA A+V   +SA      T 
Sbjct: 124 LDMRMDTTKGLSAMEWLAQVSVDDLAWVLKEFGEERFAKRIAQAVVSYNKSATEKISRTL 183

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            L+ +I   V F K+   HPATRSFQA+RI++N+E++EL + L SA   L   G L ++S
Sbjct: 184 QLAQIIADVVPF-KDKHKHPATRSFQAIRIYINSELDELEKALNSALTVLAPEGRLSIIS 242

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIP---SNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           FHSLEDR+VK+F   +S K   V   +P   S  +  +      K ++P++ ++  N RS
Sbjct: 243 FHSLEDRMVKQFMRKQS-KGETVPKGLPILESELNKNIPLKTVGKAIMPSEAEIEANPRS 301

Query: 307 RSAKLR 312
           RSA LR
Sbjct: 302 RSAVLR 307


>gi|95930740|ref|ZP_01313473.1| methyltransferase [Desulfuromonas acetoxidans DSM 684]
 gi|95133220|gb|EAT14886.1| methyltransferase [Desulfuromonas acetoxidans DSM 684]
          Length = 318

 Score =  195 bits (496), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 127/303 (41%), Positives = 179/303 (59%), Gaps = 9/303 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H  VL  + + LL+   G  +LD T G  G+SR   +  +    +I LDRD  A++ G E
Sbjct: 8   HQSVLPTETLELLDLHAGDTVLDGTLGGAGHSRLILEATAPNGVLIGLDRDHDALANGAE 67

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  Y ++  L  A F+     V + G+DG+   + DLGVSS Q+D  +RGFSF+   PL
Sbjct: 68  VLAAYGDRVILRHANFADANQVVEELGLDGLNGMLLDLGVSSYQLDQAERGFSFRADAPL 127

Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM   G  +A+DVVN A V++LT I    GEE+ A RIA  I + RQ  P  TT  L+
Sbjct: 128 DMRMDQQGDETAADVVNTATVEELTLIFKKYGEERWAGRIARRIERIRQQTPITTTFQLA 187

Query: 193 SLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            L+++TV   +   RIHPATR FQALRI VN+E++ +A+G+      LK GG+L V+SFH
Sbjct: 188 ELVKETVPGGRVPARIHPATRVFQALRIRVNDELDSVAKGVEQGIGLLKPGGVLAVISFH 247

Query: 252 SLEDRLVKKFFASRSGK-VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK  F  R+   V   R  + +    A  + +T++ V  ++ ++A N RSRSA 
Sbjct: 248 SLEDRIVKNIFRHRASPCVCPPRLPMCACGKKADVEVLTRRGVRASETEIAENPRSRSAV 307

Query: 311 LRA 313
           LRA
Sbjct: 308 LRA 310


>gi|282882847|ref|ZP_06291452.1| S-adenosyl-methyltransferase MraW [Peptoniphilus lacrimalis 315-B]
 gi|281297258|gb|EFA89749.1| S-adenosyl-methyltransferase MraW [Peptoniphilus lacrimalis 315-B]
          Length = 320

 Score =  195 bits (496), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 120/306 (39%), Positives = 175/306 (57%), Gaps = 10/306 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           HV VL  +V+  LN    K+ +DAT G  G+S+   K+ +N   +I +D+D  A+   QE
Sbjct: 5   HVSVLYNEVLENLNIRENKIYMDATIGGAGHSKGIAKILNNSGLLIGIDQDKDAIKKSQE 64

Query: 77  TMRDYKEQFSLFQAT---FSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + +Y E   LF      F ++ D +  K VDG++ DLGVSS Q D G+RGFS++    L
Sbjct: 65  VLSEY-ENVKLFNTNYKNFEEILDSLHIKKVDGILLDLGVSSYQFDKGERGFSYRFDSEL 123

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM   S ++A  +VN+ +  +L RI+   GEE  A RI+  IV+ R+     TT DL 
Sbjct: 124 DMRMDKSSPLTAKTIVNEYSKDELYRIIKEYGEENWAKRISEFIVQERKIKKINTTFDLV 183

Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+K V   ++ +  HPA R+FQALRI VN+E+  L + +    + L  GG L ++SFH
Sbjct: 184 EVIKKAVPKGARRDGPHPAKRAFQALRIEVNDELNVLKKSIYKFVERLNPGGRLAIISFH 243

Query: 252 SLEDRLVKKFFAS-RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK  F    S  V     +I +       + IT+K +VPT+E++  N RS SAK
Sbjct: 244 SLEDRIVKNAFRYLYSDCVCPPEQIICTCDKKREIEIITRKPIVPTKEEIKNNNRSHSAK 303

Query: 311 LRAGMR 316
           LR   +
Sbjct: 304 LRVAEK 309


>gi|322421370|ref|YP_004200593.1| S-adenosyl-methyltransferase MraW [Geobacter sp. M18]
 gi|320127757|gb|ADW15317.1| S-adenosyl-methyltransferase MraW [Geobacter sp. M18]
          Length = 312

 Score =  195 bits (496), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 119/303 (39%), Positives = 174/303 (57%), Gaps = 9/303 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H+ VL ++V+ LL P  G + +D T G  G++       +    +I  DRD  A++  +E
Sbjct: 6   HISVLPDEVLGLLAPKSGGIYVDGTLGGAGHAGLILAASAPQGQLIGFDRDAEAIAVAKE 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  + ++  +FQ  FS +   + + GVD   G V DLGVSS Q+D  +RGFSFQ   PL
Sbjct: 66  RLAPFGDRVRIFQRNFSSIAQTLAEIGVDAIDGFVLDLGVSSHQLDKDERGFSFQADAPL 125

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM   SG SA+D+VN  +  +L RI+   GEE+ A R+A  IVK R+  P +TT  L 
Sbjct: 126 DMRMDRSSGPSAADLVNTLSEAELNRIIAEYGEERWAKRVASFIVKAREERPIETTMQLV 185

Query: 193 SLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  +  +K   R+HPATR+FQ LRI VN E++ L  GL    K LK GG   V+SFH
Sbjct: 186 DIIKGAIPKAKWEERLHPATRTFQGLRIAVNEELKSLQLGLTDLLKLLKRGGRGAVISFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK+ F   +      + + I        ++ +TKK +   ++++  N RSRSA+
Sbjct: 246 SLEDRIVKEAFRDAAAGCTCPKELPICVCGRVPQYKVLTKKALKAGEKELNANPRSRSAR 305

Query: 311 LRA 313
           LR 
Sbjct: 306 LRG 308


>gi|251792015|ref|YP_003006735.1| S-adenosyl-methyltransferase MraW [Aggregatibacter aphrophilus
           NJ8700]
 gi|263446623|sp|C6AKG2|RSMH_AGGAN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|247533402|gb|ACS96648.1| S-adenosyl-methyltransferase MraW [Aggregatibacter aphrophilus
           NJ8700]
          Length = 322

 Score =  195 bits (496), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 134/318 (42%), Positives = 182/318 (57%), Gaps = 28/318 (8%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQ 75
           +H  VLL + +  L      + +D TFG GG+SR    K+ +N  +IA+DRDP AV+  Q
Sbjct: 11  EHSTVLLHETVDGLALKENGIYIDGTFGRGGHSRLILSKLSANGKLIAIDRDPKAVAEAQ 70

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +       +F +   TFS++      +G    +DG++ DLGVSS Q+D   RGFSF K G
Sbjct: 71  KIQ---DPRFQIEHNTFSEILSICEKRGLVGKIDGILLDLGVSSPQLDDAARGFSFMKDG 127

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA-----PF 185
           PLDMRM  S GISA++ + Q + +DL  +L   GEE+ A +IA AIV   +SA      F
Sbjct: 128 PLDMRMDDSKGISAAEWLQQVSEQDLAWVLKTFGEERFAKKIAKAIVNYNKSAVQNGSEF 187

Query: 186 QT-TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
            T T  L+ LI  TV F K+   HPATRSFQA+RIF+N E++EL + L+SA   L   G 
Sbjct: 188 LTRTLQLAELIAHTVPF-KDKHKHPATRSFQAIRIFINAELDELEKVLQSALTVLAPAGR 246

Query: 245 LIVVSFHSLEDRLVKKFFASRSG-----KVMAVRH-MIPSNAHPAVFQSITKKVVVPTQE 298
           L V+SFHSLEDR+VK F   +S      K + +R   I  N    V      K ++PT  
Sbjct: 247 LSVISFHSLEDRMVKHFMRKQSQGREIPKGLPLREDQIQRNQTLKVI----GKAIMPTDA 302

Query: 299 DVAFNRRSRSAKLRAGMR 316
           ++A N R+RSA LR   R
Sbjct: 303 EIAQNPRARSAVLRVAER 320


>gi|238754428|ref|ZP_04615783.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia
           ruckeri ATCC 29473]
 gi|238707257|gb|EEP99619.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia
           ruckeri ATCC 29473]
          Length = 304

 Score =  195 bits (496), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 123/310 (39%), Positives = 180/310 (58%), Gaps = 25/310 (8%)

Query: 23  VLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQETMR 79
           +LL++ +  LN     + +D TFG GG+SR    ++G    +IA+DRDP A+   +    
Sbjct: 1   MLLDEAVNGLNIRSNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDRDPQAIEAAKSIT- 59

Query: 80  DYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
               +FS+    FS+L  YV +      +DGV+ DLGVSS Q+D  +RGFSF + GPLDM
Sbjct: 60  --DPRFSIVHGPFSELAHYVRELDLVGKIDGVLLDLGVSSPQLDDPERGFSFMRDGPLDM 117

Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM  S GISA++ + +A   D+  +L   GEE+ A R+A AIV+R  + P   T +L++L
Sbjct: 118 RMDPSRGISAAEWLMKAGADDIAWVLKTFGEERFAKRLARAIVERNLTQPMTRTTELANL 177

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           I     F + ++ HPATRSFQA+RI++N+E+EE+ + L  A + L   G L V+SFHSLE
Sbjct: 178 IANASPFREKHK-HPATRSFQAIRIYINSELEEIERALEGALEVLAPAGRLSVISFHSLE 236

Query: 255 DRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKK------VVVPTQEDVAFNRRS 306
           DR+VK F    SR  KV A   +          QS+  +       ++P+  +VA N R+
Sbjct: 237 DRIVKNFIRNQSRGPKVPAGLPLTEEQ-----LQSLGGRNLKAVGKMMPSDAEVAENPRA 291

Query: 307 RSAKLRAGMR 316
           RS+ LR   R
Sbjct: 292 RSSVLRFAER 301


>gi|123441024|ref|YP_001005013.1| S-adenosyl-methyltransferase MraW [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|263504660|sp|A1JJI5|RSMH_YERE8 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|122087985|emb|CAL10773.1| conserved hypothetical protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 320

 Score =  195 bits (496), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 123/313 (39%), Positives = 182/313 (58%), Gaps = 19/313 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN     + +D TFG GG+SR    ++G    +IA+DRDP A+   + 
Sbjct: 14  HTSVLLDEAVNGLNIRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDRDPQAIEAAKS 73

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  +FS+    FS L  YV +      ++GV+ DLGVSS Q+D  +RGFSF + GP
Sbjct: 74  IT---DPRFSIVHGPFSDLAHYVRELNLVGRINGVLLDLGVSSPQLDDPERGFSFMRDGP 130

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + GISA++ + +A+  D+  +L   GEE+ A R+A AIV+R  + P   T++L
Sbjct: 131 LDMRMDPTRGISAAEWLMKASADDIAWVLKTFGEERFAKRLAKAIVERNLTQPMTRTKEL 190

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI     F + ++ HPATRSFQA+RI++N+E+EE+ + L  A + L   G L V+SFH
Sbjct: 191 ADLIANASPFREKHK-HPATRSFQAIRIYINSELEEIERALDGALEVLAPEGRLSVISFH 249

Query: 252 SLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306
           SLEDR+VK F    SR  +V A   +  +          +S+ K  ++P   +VA N R+
Sbjct: 250 SLEDRIVKNFIRHHSRGPQVPAGLPLTEAQLRSMGGRTLKSVGK--MMPPDAEVAENPRA 307

Query: 307 RSAKLRAGMRTVE 319
           RS+ LR   R  E
Sbjct: 308 RSSVLRFAERIKE 320


>gi|296122349|ref|YP_003630127.1| S-adenosyl-methyltransferase MraW [Planctomyces limnophilus DSM
           3776]
 gi|296014689|gb|ADG67928.1| S-adenosyl-methyltransferase MraW [Planctomyces limnophilus DSM
           3776]
          Length = 298

 Score =  195 bits (495), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 123/315 (39%), Positives = 177/315 (56%), Gaps = 34/315 (10%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76
           H+PV+L +VI  L   PG V+ D T GAGG+SR   K +GS   ++A DRDP  +S  ++
Sbjct: 2   HLPVMLREVIQQLQLEPGLVVADGTLGAGGHSREILKAIGSAGMLLAFDRDPMMISLAEK 61

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG--------VDGVVFDLGVSSMQIDCGDRGFSFQ 128
           T+    E   + Q ++  ++D +            VD ++ DLG SS Q+   +RGFSFQ
Sbjct: 62  TV--CGENVHIHQGSYIDIRDVLQRHTQATGRPPLVDRLLLDLGYSSDQLADRERGFSFQ 119

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
             GPLD+R S S  +SA+  +  AN  ++ R+L   GEE  A R+  AI    +    QT
Sbjct: 120 TEGPLDLRFSTSENVSAAHWLATANDSEIVRVLTEFGEEPFADRLGPAIGLAARRGELQT 179

Query: 188 TQDLSSLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRS-AEKALKAGGL 244
           T+DL  ++++TV     +N   HPATR FQALRI VN+E+  ++  L   A + L  GG+
Sbjct: 180 TKDLVRVVEQTVPPAILRNAEKHPATRVFQALRIQVNDELTHVSTMLNQIAPEVLAPGGI 239

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           + V++FHSLEDRLVK+ F  ++                 V+Q +T K +VPT  ++ FN 
Sbjct: 240 MAVITFHSLEDRLVKQAFRQKN-----------------VWQELTDKPLVPTPAEIRFNP 282

Query: 305 RSRSAKLRAGMRTVE 319
           RSRSAKLR   R  E
Sbjct: 283 RSRSAKLRIARRIAE 297


>gi|302868932|ref|YP_003837569.1| S-adenosyl-methyltransferase MraW [Micromonospora aurantiaca ATCC
           27029]
 gi|302571791|gb|ADL47993.1| S-adenosyl-methyltransferase MraW [Micromonospora aurantiaca ATCC
           27029]
          Length = 391

 Score =  195 bits (495), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 115/310 (37%), Positives = 179/310 (57%), Gaps = 11/310 (3%)

Query: 18  GDHVPVLLEKVIALLNPA---PGKVI-LDATFGAGGYSRSFCKMGSN--VIALDRDPFAV 71
           G HVPVLLE+ + LL PA   PG+ + +DAT G  G++ +      +  +I LDRD  A+
Sbjct: 28  GTHVPVLLERCLELLAPALGRPGRTVHVDATLGLAGHAEAVLSAHPDTVLIGLDRDTEAL 87

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQ 128
           +  +  +  + ++  L  A + +L + +   G   +DGV+FDLGVSS+Q+D  DRGF++ 
Sbjct: 88  AHARVRLARFADRIHLEHAVYDELPEVLDRLGYPAIDGVLFDLGVSSLQLDAPDRGFAYA 147

Query: 129 KSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           +  PLDMRM    G++A +VVN  +  DL R+L + GEEK A +IA AI++ R+     +
Sbjct: 148 QDAPLDMRMDQTRGVTAEEVVNTYSHPDLARLLRVYGEEKFAGKIASAIIRERERNRITS 207

Query: 188 TQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           +  L+ L++  +   ++    HPA R+FQALRI VN E+  L   L +A   L  GG ++
Sbjct: 208 SARLAELVRDAIPAPARRTGGHPAKRTFQALRIEVNRELAALETALPAALDKLTVGGRMV 267

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+S+HSLEDRL K+  A R      V   +        F+ +++   +P + +VA N R+
Sbjct: 268 VLSYHSLEDRLTKQALADRVRSKGPVDLPVELPGSGPTFRLLSRGAELPGEAEVAANPRA 327

Query: 307 RSAKLRAGMR 316
            S +LRA  R
Sbjct: 328 ASVRLRAAER 337


>gi|315504598|ref|YP_004083485.1| s-adenosyl-methyltransferase mraw [Micromonospora sp. L5]
 gi|315411217|gb|ADU09334.1| S-adenosyl-methyltransferase MraW [Micromonospora sp. L5]
          Length = 391

 Score =  195 bits (495), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 115/310 (37%), Positives = 179/310 (57%), Gaps = 11/310 (3%)

Query: 18  GDHVPVLLEKVIALLNPA---PGKVI-LDATFGAGGYSRSFCKMGSN--VIALDRDPFAV 71
           G HVPVLLE+ + LL PA   PG+ + +DAT G  G++ +      +  +I LDRD  A+
Sbjct: 28  GTHVPVLLERCLELLAPALGRPGRTVHVDATLGLAGHAEAVLSAHPDTVLIGLDRDTEAL 87

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQ 128
           +  +  +  + ++  L  A + +L + +   G   +DGV+FDLGVSS+Q+D  DRGF++ 
Sbjct: 88  AHARVRLARFADRIHLEHAVYDELPEVLDRLGYPAIDGVLFDLGVSSLQLDAPDRGFAYA 147

Query: 129 KSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           +  PLDMRM    G++A +VVN  +  DL R+L + GEEK A +IA AI++ R+     +
Sbjct: 148 QDAPLDMRMDQTRGVTAEEVVNTYSHPDLARLLRVYGEEKFAGKIASAIIRERERNRITS 207

Query: 188 TQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           +  L+ L++  +   ++    HPA R+FQALRI VN E+  L   L +A   L  GG ++
Sbjct: 208 SARLAELVRDAIPAPARRTGGHPAKRTFQALRIEVNRELAALETALPAALDKLTVGGRMV 267

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+S+HSLEDRL K+  A R      V   +        F+ +++   +P + +VA N R+
Sbjct: 268 VLSYHSLEDRLTKQALADRVRSKGPVDLPVELPGSGPTFRLLSRGAELPGEAEVAANPRA 327

Query: 307 RSAKLRAGMR 316
            S +LRA  R
Sbjct: 328 ASVRLRAAER 337


>gi|15827426|ref|NP_301689.1| S-adenosyl-methyltransferase MraW [Mycobacterium leprae TN]
 gi|221229903|ref|YP_002503319.1| S-adenosyl-methyltransferase MraW [Mycobacterium leprae Br4923]
 gi|13092976|emb|CAC31287.1| conserved hypothetical protein [Mycobacterium leprae]
 gi|219933010|emb|CAR71001.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
          Length = 372

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 120/317 (37%), Positives = 174/317 (54%), Gaps = 20/317 (6%)

Query: 20  HVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPF 69
           HVPV  ++ + LL PA           +++DAT G GG++  F     G  +I LDRDP 
Sbjct: 42  HVPVFAQRCVTLLAPALTRHHADGSNAILVDATLGVGGHAERFLTEFPGLRLIGLDRDPS 101

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQ------DYVPDKGVDGVVFDLGVSSMQIDCGDR 123
           A+   +  +  + ++ +L    +  L        Y   + VDGV+FDLGVSSMQ+DC +R
Sbjct: 102 ALDIARTRLMRFADRVTLIHTRYDNLAVALNKFGYAAVESVDGVLFDLGVSSMQLDCAER 161

Query: 124 GFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GFS+ +  PLDMRM   S +SA+D+VN  +   L  IL   GEE+ A RIA  IV+RR  
Sbjct: 162 GFSYAQDVPLDMRMDPWSPVSAADIVNNYDEAALADILRRYGEERFARRIAAHIVRRRAH 221

Query: 183 APFQTTQDLSSLIQKTVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
            PF +T +L +L+ + +  +   RI  HPA R+FQALRI VN+E+  L+  L +A  AL 
Sbjct: 222 TPFTSTAELVALLYQAIP-APARRIGGHPAKRTFQALRIAVNDELNSLSNVLPAALDALT 280

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300
             G L+V+++ SLEDR+VK+ FA            I    H   F+ +T+        ++
Sbjct: 281 VAGRLVVLAYQSLEDRIVKRVFADAVSSRTPAGLPIELPGHGPRFRLLTRGAEHADAAEI 340

Query: 301 AFNRRSRSAKLRAGMRT 317
             N RS + +LRA  RT
Sbjct: 341 ECNPRSAAVRLRALQRT 357


>gi|317132992|ref|YP_004092306.1| S-adenosyl-methyltransferase MraW [Ethanoligenens harbinense
           YUAN-3]
 gi|315470971|gb|ADU27575.1| S-adenosyl-methyltransferase MraW [Ethanoligenens harbinense
           YUAN-3]
          Length = 312

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 117/299 (39%), Positives = 171/299 (57%), Gaps = 6/299 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77
           H  VLL + I  L   P  V +D T G GG+S +         +IALD DP AV    E 
Sbjct: 6   HQSVLLHESIEALAIRPDGVYVDGTAGGGGHSAAIAAGLESGRLIALDADPDAVRAAGER 65

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +  +  +  + Q+ F  ++  + D G   VDG++ DLGVSS Q D   RGFS++   PLD
Sbjct: 66  LAPFGSKACVVQSNFRDMKRVLADLGIAEVDGILLDLGVSSHQFDTPARGFSYRADAPLD 125

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRMS SG+ A +++  A+  +L RIL   GEE+ A RIA AI KRR++ P +TT +LS L
Sbjct: 126 MRMSQSGLGARELLATASYAELVRILREYGEERFAPRIAAAICKRRETKPLETTFELSEL 185

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           +++          HPA ++FQALR+ VN E+E L+  L  A   L+ GG L +++FHSLE
Sbjct: 186 VREAYPAPARRSGHPARKTFQALRMAVNGELESLSVLLDDALALLRPGGRLCIITFHSLE 245

Query: 255 DRLVK-KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           DR+VK +F +   G +      +         + + K+ V+P+ E++  N+RSRSA+LR
Sbjct: 246 DRMVKQRFLSWAQGCICPPDFPVCVCGRKPQVRVVYKRGVLPSAEEIEANQRSRSARLR 304


>gi|303246299|ref|ZP_07332579.1| S-adenosyl-methyltransferase MraW [Desulfovibrio fructosovorans JJ]
 gi|302492362|gb|EFL52234.1| S-adenosyl-methyltransferase MraW [Desulfovibrio fructosovorans JJ]
          Length = 326

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 123/309 (39%), Positives = 174/309 (56%), Gaps = 13/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H+PVLL++V+  L   PG  ILDAT G GG+ +   +     + V+ LDRD  A+     
Sbjct: 7   HIPVLLKEVVEYLGIRPGMKILDATAGLGGHIKGMLEAAGGQAEVLGLDRDREALEEAGR 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  Y ++  L +  +S+    + + G   VD  + D G+SS+Q+D  +RGF F   GPL
Sbjct: 67  RLAAYGDRVRLVRTRYSRFPAALAEAGWEKVDAALVDAGMSSLQLDDPERGFGFLTDGPL 126

Query: 134 DMRMSCS--GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           DMRM     G SA  +VN A+   L  I+   GE+ QA RIA AIV  R+ A   TT  L
Sbjct: 127 DMRMGAEDGGESAEGLVNLASFARLREIIRNYGEDPQAGRIARAIVAAREKAAITTTGRL 186

Query: 192 SSLIQKTVYFSKNN---RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           + ++    Y +K     R HPATR+FQALR+ VN+E++EL   L +  + L  GG + V+
Sbjct: 187 AEVV-AAAYPAKWRAMARQHPATRTFQALRMAVNDELKELEAFLAAVPEYLATGGRVAVI 245

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           SFHSLEDRLVK+ F   +   +  R  ++    H A    +TKK V+  +E+VA N R+R
Sbjct: 246 SFHSLEDRLVKRAFRLEATDCLCPREQVVCVCGHKARLAILTKKPVMAGEEEVAANPRAR 305

Query: 308 SAKLRAGMR 316
           SAKLR   R
Sbjct: 306 SAKLRVARR 314


>gi|297623827|ref|YP_003705261.1| S-adenosyl-methyltransferase MraW [Truepera radiovictrix DSM 17093]
 gi|297165007|gb|ADI14718.1| S-adenosyl-methyltransferase MraW [Truepera radiovictrix DSM 17093]
          Length = 339

 Score =  194 bits (494), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 117/288 (40%), Positives = 170/288 (59%), Gaps = 24/288 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVS-CGQETM 78
           H PV+L + +A L   P    LD TFGAGG++R+  + G NV+ALDRDP       ++ +
Sbjct: 10  HAPVMLAECLAHLAVKPQAWYLDGTFGAGGHTRALLEAGGNVLALDRDPSVTRFLPEDAL 69

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
              + +F   +  F  L  +    GV    GV+ DLGVSSMQ+D  +RGFSF+  GPLDM
Sbjct: 70  ASGRLRF--VEGNFDALDRHAAAAGVGPLAGVLLDLGVSSMQLDEAERGFSFRHPGPLDM 127

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RM  +G+ A+D+VN A+ ++L  ++   GEE+ + RIA  IV+ R  AP  TT +L+ +I
Sbjct: 128 RMGPTGLCAADLVNSASQEELASVIFRYGEERYSRRIARRIVEARAKAPITTTDELAEII 187

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
            +  Y     R HPA R+FQALR+ VN+E+  L + L +AE+AL  GG L+V+++HSLED
Sbjct: 188 AR-AYPPGPRRDHPARRTFQALRVAVNDELGALERALAAAERALAPGGRLVVLTYHSLED 246

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
           R+VK+ F S                  A+   +TKK +  + E+VA N
Sbjct: 247 RIVKRAFKSS-----------------ALLTPLTKKPLTASPEEVAAN 277


>gi|281356442|ref|ZP_06242934.1| S-adenosyl-methyltransferase MraW [Victivallis vadensis ATCC
           BAA-548]
 gi|281317134|gb|EFB01156.1| S-adenosyl-methyltransferase MraW [Victivallis vadensis ATCC
           BAA-548]
          Length = 314

 Score =  194 bits (494), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 119/312 (38%), Positives = 187/312 (59%), Gaps = 15/312 (4%)

Query: 19  DHVPVLLEKVIALLN-PA--PGKVILDATFGAGGYS----RSFCKMGSNVIALDRDPFAV 71
           +H+PVL  +V+  L  P+  P ++I D T G GG+S    R + ++   ++ +DRD  A+
Sbjct: 6   EHIPVLRREVLKYLTFPSDRPARLI-DGTVGGGGHSALLLRRYPQL--ELLGIDRDENAL 62

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQ 128
           +   ET+     + +L +  +S L     + G   VDG++ D+GVSS Q+D   RGFS++
Sbjct: 63  AKAAETLAFAGNRVTLVRGDYSSLAGRAAEHGWEEVDGILLDIGVSSPQLDHAGRGFSWR 122

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
             GPLDMRM   S ++AS  +N+A+ ++L R+L   GE  ++ R+A AIVK+R++ PF T
Sbjct: 123 AEGPLDMRMDQRSELTASRFLNRASEQELERVLREYGEVDKSRRVAAAIVKKRETHPFAT 182

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T DL  L  + +  SK  ++   T  FQALRI VN+E+ EL + L +AEK LK GG ++V
Sbjct: 183 TADLVGLCDEVLGKSKPGKLPAPTLVFQALRIAVNDELGELERALPAAEKLLKKGGRIVV 242

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           +SFHSLEDR+VK +F   +   +    + +      +  + +T KVV   ++++A NRRS
Sbjct: 243 ISFHSLEDRIVKNYFRDAAASCICPPGLPVCVCGKQSTLKVLTNKVVTAREDELAENRRS 302

Query: 307 RSAKLRAGMRTV 318
             A+LRA  + V
Sbjct: 303 APARLRAAEKLV 314


>gi|330859314|emb|CBX69661.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia
           enterocolitica W22703]
          Length = 320

 Score =  194 bits (494), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 123/313 (39%), Positives = 182/313 (58%), Gaps = 19/313 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN     + +D TFG GG+SR    ++G    +IA+DRDP A+   + 
Sbjct: 14  HTSVLLDEAVNGLNIRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDRDPQAIEAAKS 73

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  +FS+    FS L  YV +      ++GV+ DLGVSS Q+D  +RGFSF + GP
Sbjct: 74  IT---DPRFSIVHGPFSDLAHYVRELDLVGRINGVLLDLGVSSPQLDDPERGFSFMRDGP 130

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + GISA++ + +A+  D+  +L   GEE+ A R+A AIV+R  + P   T++L
Sbjct: 131 LDMRMDPTRGISAAEWLMKASADDIAWVLKTFGEERFAKRLAKAIVERNLTQPMTRTKEL 190

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI     F + ++ HPATRSFQA+RI++N+E+EE+ + L  A + L   G L V+SFH
Sbjct: 191 ADLIANASPFREKHK-HPATRSFQAIRIYINSELEEIERALDGALEVLAPEGRLSVISFH 249

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRS 306
           SLEDR+VK F    SR  +V A   +  +          +S+ K  ++P   +VA N R+
Sbjct: 250 SLEDRIVKNFIRHHSRGPQVPAGLPLTEAQLRSMGGRTLKSVGK--MMPPDAEVAENPRA 307

Query: 307 RSAKLRAGMRTVE 319
           RS+ LR   R  E
Sbjct: 308 RSSVLRFAERIKE 320


>gi|146305949|ref|YP_001186414.1| S-adenosyl-methyltransferase MraW [Pseudomonas mendocina ymp]
 gi|262825105|sp|A4XQR6|RSMH_PSEMY RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|145574150|gb|ABP83682.1| S-adenosyl-methyltransferase MraW [Pseudomonas mendocina ymp]
          Length = 314

 Score =  194 bits (494), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 119/306 (38%), Positives = 179/306 (58%), Gaps = 18/306 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H+ VLL++ +  L        +D TFG GG+SR        G  ++  D+DP A++ G E
Sbjct: 8   HITVLLDEAVEGLAVRADGCYIDGTFGRGGHSRLILHKLGPGGRLLGFDKDPLAIATG-E 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            +     +F + Q +F++L D    +G    V GV+ DLGVSS Q+D  +RGFSF   GP
Sbjct: 67  ALAAEDGRFVVVQRSFAELGDEAVVRGISGQVSGVLLDLGVSSPQLDDPERGFSFLNDGP 126

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+   G+SA+D +  A   ++ R+L   GEE+ A R+A A+V+RR+  PF  T DL
Sbjct: 127 LDMRMNPDVGVSAADWIATAEEDEIARVLKDYGEERFAKRMARAVVQRREQQPFTRTADL 186

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++ +     +  + +PATR+FQ +RI+VNNE+ +L +GL +A +AL+ GG L+V+SFH
Sbjct: 187 AKVLTEANPAWEKGK-NPATRAFQGIRIYVNNELGDLERGLDAALEALEVGGRLVVISFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVR-----HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           SLEDR+VK+F   R  K  A +      +IP    P +   +  K V     ++  N RS
Sbjct: 246 SLEDRIVKQFM-KRQAKGEADKLPRDLPIIPKAFEPRL--KLIGKPVYAGDAELKANPRS 302

Query: 307 RSAKLR 312
           RSA +R
Sbjct: 303 RSAVMR 308


>gi|37527526|ref|NP_930870.1| S-adenosyl-methyltransferase MraW [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|42559441|sp|Q7N139|RSMH_PHOLL RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|36786961|emb|CAE16035.1| S-adenosyl-methyltransferase MraW [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 314

 Score =  194 bits (494), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 123/306 (40%), Positives = 177/306 (57%), Gaps = 19/306 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN     + +D TFG GG+SR    ++G+   +IA+DRDP A+   + 
Sbjct: 8   HTSVLLDEAVNGLNIRENGIYIDGTFGRGGHSRLILSQLGTEGRLIAIDRDPQAIEVAKA 67

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  +FS+    FS+L  Y    G    +DGV+ DLGVSS Q+D  +RGFSF + GP
Sbjct: 68  IT---DPRFSIVHGPFSKLAHYTEKAGLIGKIDGVLLDLGVSSPQLDDPERGFSFMRDGP 124

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G SA++ +  A   D+  +L   GEE+ A RIA AIV   Q  P   T+ L
Sbjct: 125 LDMRMDPTRGQSAAEWLMNATADDIAWVLKTFGEERFAKRIARAIVACNQEEPITRTKAL 184

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI +     + ++ HPAT+SFQA+RI++N+E+EE+ Q L  A + L   G L V+SFH
Sbjct: 185 ADLIAQASPIKEKHK-HPATKSFQAIRIYINSELEEIEQALEGALQVLAPQGRLSVISFH 243

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHP---AVFQSITKKVVVPTQEDVAFNRRS 306
           SLEDR+VK+F    SR  +V A   +             +SI K  + P++E+VA N R+
Sbjct: 244 SLEDRIVKRFIRQNSRGPQVPAGLPLTEEQLKARGGRSLKSIGK--MKPSEEEVADNPRA 301

Query: 307 RSAKLR 312
           RS+ LR
Sbjct: 302 RSSVLR 307


>gi|260912995|ref|ZP_05919480.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Pasteurella dagmatis ATCC 43325]
 gi|260632985|gb|EEX51151.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Pasteurella dagmatis ATCC 43325]
          Length = 321

 Score =  194 bits (494), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 127/311 (40%), Positives = 179/311 (57%), Gaps = 22/311 (7%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQ 75
           +H+ VLL + +  L      + +D TFG GG+SR    K+  N  +IA+DRDP A++   
Sbjct: 11  EHITVLLNEAVDGLALKERGIYIDGTFGRGGHSRLILSKLSDNGRLIAIDRDPRAIA--- 67

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           E  +    +F +   +FS + +     G    +DG++ DLGVSS Q+D  +RGFSF K G
Sbjct: 68  EANKIQDARFHIEHNSFSAIPEICEKLGLTGKIDGILLDLGVSSPQLDEAERGFSFMKDG 127

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA------P 184
           PLDMRM  + G+SAS+ + Q +  DL  +L   GEE+ A RIA AIV   +SA      P
Sbjct: 128 PLDMRMDTTQGLSASEWLQQVSESDLAWVLKTFGEERFAKRIASAIVNYNKSAQQNGSGP 187

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
              T  L+ LI ++V F K+   HPATRSFQA+RIF+N E++EL   L+SA   L   G 
Sbjct: 188 LTRTLQLAELIAQSVPF-KDKHKHPATRSFQAIRIFINAELDELESVLQSALSVLAPEGR 246

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK---KVVVPTQEDVA 301
           L ++SFHSLEDR+VK F   +S K  ++   +P            K   K ++P++E+ A
Sbjct: 247 LSIISFHSLEDRMVKHFMRKQS-KGESLPKGLPLREDQIKRSQTLKTIGKAIMPSEEEQA 305

Query: 302 FNRRSRSAKLR 312
            N RSRSA LR
Sbjct: 306 NNPRSRSAVLR 316


>gi|253699149|ref|YP_003020338.1| S-adenosyl-methyltransferase MraW [Geobacter sp. M21]
 gi|263455964|sp|C6DZJ8|RSMH_GEOSM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|251773999|gb|ACT16580.1| S-adenosyl-methyltransferase MraW [Geobacter sp. M21]
          Length = 312

 Score =  194 bits (494), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 119/302 (39%), Positives = 173/302 (57%), Gaps = 9/302 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H+ VL ++V+  L+P  G V +D T G  G++       +    +I  DRD  A++  ++
Sbjct: 6   HISVLPDEVLQALSPKSGGVYVDGTLGGAGHAGLILTASAPEGRLIGFDRDEEAIAVARQ 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  +  +  +    F+ +   + + GVDG+   V DLGVSS Q+D  +RGFSF    PL
Sbjct: 66  RLSVFGGRVRIIHRNFAGIAQALAEIGVDGIDGFVLDLGVSSHQLDRDERGFSFMHDAPL 125

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM   SG SA+D+VN     +L RI+   GEE+ A R+A  IVK R   P +TT +L 
Sbjct: 126 DMRMDRSSGQSAADLVNTLPEAELYRIISEYGEERWAKRVASFIVKARDERPIETTLELV 185

Query: 193 SLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  +  +K   R+HPATR+FQALRI VN E++ L +GL+     LK GG   V+SFH
Sbjct: 186 DVIKGAIPKAKWEERLHPATRTFQALRIAVNEELKSLEEGLQGLLSLLKQGGRGAVISFH 245

Query: 252 SLEDRLVKKFF-ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK+ F A+ +G        I        F+ +T+K +   + +VA N RSRSAK
Sbjct: 246 SLEDRIVKEGFRAAATGCTCPKELPICVCGRVPRFKLVTRKPITAGESEVAANPRSRSAK 305

Query: 311 LR 312
           LR
Sbjct: 306 LR 307


>gi|268610557|ref|ZP_06144284.1| S-adenosyl-methyltransferase MraW [Ruminococcus flavefaciens FD-1]
          Length = 313

 Score =  194 bits (494), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 122/318 (38%), Positives = 180/318 (56%), Gaps = 22/318 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+PV+L + I  L   P  + +D T G  G+S +     S    +IALDRDP AV+   E
Sbjct: 5   HIPVMLTECIEGLAIDPDGIYVDGTAGGAGHSSAIAAKLSEKGRLIALDRDPDAVAVATE 64

Query: 77  TMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  +     +  + +S+++   D +    VDG++ DLGVSS Q+D G RGFS+    PL
Sbjct: 65  RLSKFSNA-QVIHSNYSEIRSVLDRLEIDSVDGILMDLGVSSFQLDEGSRGFSYHTDAPL 123

Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           DMRMS  G SA+D+VN  +  +L RI+   GEEK + RIA  I+K R+ AP +TT  L+ 
Sbjct: 124 DMRMSKVGTSAADIVNTYSEAELARIMFEYGEEKFSRRIASNIIKAREKAPVETTLQLAD 183

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           +I+++V        +P  ++FQALRI VN+E + L++GL  A   LK  G L V++FHSL
Sbjct: 184 IIRESVPQKARRDKNPCKKTFQALRIAVNSEFDHLSKGLEDAFYCLKPQGRLAVITFHSL 243

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF------QSITKKVVVPTQEDVAFNRRSR 307
           EDRLVK+ FA+     +      P +    V       + + +K +   +E++  N RSR
Sbjct: 244 EDRLVKQKFAAWCKGCIC-----PPDFPQCVCGRKPEGRLVNRKPIEAGEEELENNNRSR 298

Query: 308 SAKLRAGMRTVERSIEDD 325
           SAKL    R +ERS E +
Sbjct: 299 SAKL----RIIERSGESN 312


>gi|167854991|ref|ZP_02477765.1| S-adenosyl-methyltransferase MraW [Haemophilus parasuis 29755]
 gi|167853839|gb|EDS25079.1| S-adenosyl-methyltransferase MraW [Haemophilus parasuis 29755]
          Length = 312

 Score =  194 bits (494), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 123/306 (40%), Positives = 178/306 (58%), Gaps = 18/306 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQE 76
           H+ VLL + +  L   P  + +D TFG GG+SR    K+G    +IA+DRDP A++    
Sbjct: 7   HITVLLHEAVDGLAIKPNGIYVDGTFGRGGHSRLILSKLGEQGRLIAIDRDPRAIAEAN- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           T+ D +  F +  + FS + D   +      +DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 66  TITDPR--FQIVHSAFSSIPDICDELNLVGKIDGILLDLGVSSPQLDEAERGFSFMRDGP 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP--FQTTQ 189
           LDMRM  + G+SA + + Q +V DL  +L   GEE+ A RIA A+V   +SA      T 
Sbjct: 124 LDMRMDTTKGLSAMEWLAQVSVDDLAWVLKEFGEERFAKRIAQAVVSYNKSATEKISRTL 183

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            L  +I   V F K+   HPATRSFQA+RI++N+E++EL + L SA   L   G L ++S
Sbjct: 184 QLVQIIADVVPF-KDKHKHPATRSFQAIRIYINSELDELEKALNSALTVLAPEGRLSIIS 242

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIP---SNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           FHSLEDR+VK+F   +S K   V   +P   S  +  +      K ++P++ ++  N RS
Sbjct: 243 FHSLEDRMVKQFMRKQS-KGETVPKGLPILESELNKNIPLKTVGKAIMPSEAEIEANPRS 301

Query: 307 RSAKLR 312
           RSA LR
Sbjct: 302 RSAVLR 307


>gi|254382600|ref|ZP_04997958.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Streptomyces sp. Mg1]
 gi|194341503|gb|EDX22469.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Streptomyces sp. Mg1]
          Length = 310

 Score =  194 bits (494), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 116/308 (37%), Positives = 179/308 (58%), Gaps = 12/308 (3%)

Query: 23  VLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77
           ++L++ + LL PA   PG V++D T G GG+S +       +++I LDRD  A+    E 
Sbjct: 1   MMLQRCLDLLAPALQKPGAVVVDCTLGLGGHSEALLTRFPEAHLIGLDRDKEALRLSGER 60

Query: 78  MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +  +  + +L  A ++ L + +       V G++FDLGVSSMQ+D  DRGF++ +  PLD
Sbjct: 61  LAPFGGRVTLVHAIYADLAEVLDGLRIPAVQGILFDLGVSSMQLDEADRGFAYAQDAPLD 120

Query: 135 MRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM   +GISA++V+N     +L RIL   GEEKQA RI  A+V+ R+  PF  +  L  
Sbjct: 121 MRMDQTTGISAAEVLNTYAPGELVRILRQYGEEKQAKRIVSAVVREREKEPFSNSARLVE 180

Query: 194 LIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           LI+  +   +K    +PA R+FQALRI VN E+  L + + +A   +  GG + V+S+HS
Sbjct: 181 LIRDALPQAAKRTGGNPAKRTFQALRIEVNGELSGLERAIPAAVDRIAVGGRIAVLSYHS 240

Query: 253 LEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDRLVK+ FA+ +         ++P    P   + +T+   +PT+E++A NRR+  A+ 
Sbjct: 241 LEDRLVKQVFAAGATSTAPPGLPVVPEKYQPK-LKLLTRGAELPTEEEIAENRRAAPARF 299

Query: 312 RAGMRTVE 319
           R   R  E
Sbjct: 300 RGVERIRE 307


>gi|229086483|ref|ZP_04218655.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus Rock3-44]
 gi|228696800|gb|EEL49613.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus Rock3-44]
          Length = 332

 Score =  194 bits (494), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 117/307 (38%), Positives = 180/307 (58%), Gaps = 11/307 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVS 72
           T+  HV VLL++ +  L+  PG   +D T G GG+S    S    G  +IA D+D  A+ 
Sbjct: 22  TMFKHVTVLLKETVDGLDIKPGGTYVDCTLGGGGHSSYLLSRLTEGGKLIAFDQDEIAIQ 81

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK 129
             +E    Y +QF   ++ F  L + + + G   VDG++FDLGVSS Q+D  +RGFS+  
Sbjct: 82  NAKEKFSSYGDQFVTVKSNFRYLSEKLQELGITEVDGILFDLGVSSPQLDTPERGFSYHH 141

Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM   + ++A +VVN  + + L RI    GEEK + +IA  I   R++   +TT
Sbjct: 142 DAPLDMRMDQDASLTAYEVVNNWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKTIETT 201

Query: 189 QDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L  LI++ +   ++    HPA R FQA+RI VN+E++   + L SA K +K GG + V
Sbjct: 202 GELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIKMVKPGGRVSV 261

Query: 248 VSFHSLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           ++FHSLEDR+ K  F   S + ++     +IP    P + + IT+K ++P++E++  N R
Sbjct: 262 ITFHSLEDRICKTTFKRNSSTPQLPPGLPIIPDEFKPKL-KLITRKPILPSEEELEENNR 320

Query: 306 SRSAKLR 312
           +RSAKLR
Sbjct: 321 ARSAKLR 327


>gi|114330281|ref|YP_746503.1| S-adenosyl-methyltransferase MraW [Nitrosomonas eutropha C91]
 gi|123321952|sp|Q0AJD3|RSMH_NITEC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|114307295|gb|ABI58538.1| S-adenosyl-methyltransferase MraW [Nitrosomonas eutropha C91]
          Length = 317

 Score =  194 bits (494), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 116/304 (38%), Positives = 176/304 (57%), Gaps = 12/304 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76
           H+ VLLE+ +  LN   G + +D T+G GG+SR   S       +IA D+DP A+S  + 
Sbjct: 2   HISVLLEEAVDALNIQKGGIYVDGTYGRGGHSRLILSRLDKSGQLIAFDKDPAAISEARS 61

Query: 77  TMRD-YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
            + + ++   S +   ++ LQ    ++ VDG++ DLGVSS+Q+D   RGFSF+  GPLDM
Sbjct: 62  ILDERFQAVHSSYAGMYTALQSLGINR-VDGILLDLGVSSIQLDEASRGFSFRHDGPLDM 120

Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM  S G +A++ +  A+  +L  I+   GEE+ A +IA AIV  +   P  TT  L+ +
Sbjct: 121 RMDSSRGKTAAEWLTMASETELKEIIRTYGEERYAGQIASAIVMEQARQPISTTLRLAEI 180

Query: 195 IQKTVY--FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +   V     +++R HPATR+FQA+RI +N E+EEL+  L    + L  GG L+V+SFHS
Sbjct: 181 VAAVVRKRGHRDDRQHPATRTFQAIRIHLNQELEELSMTLPQCVELLNTGGRLVVISFHS 240

Query: 253 LEDRLVKKFFASRSGKVMAVRHMI----PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           LEDR+VK+F   ++G     R +      S  H      I  K + P  ++V+ N R+RS
Sbjct: 241 LEDRIVKRFMRMQTGTDTLPRRLPIREEESRLHNQQKLRIIGKKIRPGSDEVSANPRARS 300

Query: 309 AKLR 312
           A +R
Sbjct: 301 AVMR 304


>gi|310823496|ref|YP_003955854.1| s-adenosyl-l-methionine-dependent methyltransferase mraw
           [Stigmatella aurantiaca DW4/3-1]
 gi|309396568|gb|ADO74027.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Stigmatella aurantiaca DW4/3-1]
          Length = 301

 Score =  194 bits (494), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 116/299 (38%), Positives = 170/299 (56%), Gaps = 12/299 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H  VLL + + LL P  GKVILD T G GG++ +    G+ VI +DRDP A++     + 
Sbjct: 5   HQTVLLAEAVQLLQPGVGKVILDGTLGGGGHTEALLARGATVIGVDRDPVALAAATARLG 64

Query: 80  DYKEQFSLFQATFSQL----QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
            +   F      F +L     D +P   VDGV+ DLGVSS Q+D  +RGFSF   GPLDM
Sbjct: 65  GHA-HFQARAGNFGELPRVAADVLP---VDGVLVDLGVSSPQLDVAERGFSFNHDGPLDM 120

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RM   G +A++++ Q + ++L RI+  LGEE  +  IA  +   +++ P +T +   ++ 
Sbjct: 121 RMGPEGRTAAELIAQEDERELARIIYELGEESFSRPIAREL---KRALPTRTLEAAEAVK 177

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           +     +   RIH AT++FQALR+ VN E+E L   L +  + LK GG   V++FHSLED
Sbjct: 178 RAVPRKAWPKRIHVATKTFQALRMAVNGELEALDALLGALPRLLKVGGRAAVIAFHSLED 237

Query: 256 RLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           R VK+ F +  G       + + +   P  F  +TKK V  ++++V  N RSRSA LRA
Sbjct: 238 RKVKEAFRNLVGACRCPPGLPVCACGGPGDFAPLTKKAVSASEQEVELNPRSRSAHLRA 296


>gi|108804337|ref|YP_644274.1| methyltransferase [Rubrobacter xylanophilus DSM 9941]
 gi|123069097|sp|Q1AVW6|RSMH_RUBXD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|108765580|gb|ABG04462.1| methyltransferase [Rubrobacter xylanophilus DSM 9941]
          Length = 312

 Score =  194 bits (494), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 122/314 (38%), Positives = 180/314 (57%), Gaps = 19/314 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H PV+LE+ +  L P+ G V++DATFG GG+S    +    G  V+ +DRDP A    + 
Sbjct: 6   HRPVMLEEAVRALAPSGGDVVVDATFGGGGHSARVLRELGPGGRVVGIDRDPEARGRAER 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
            + D +  FS  Q  + ++   +  +G   D ++FDLG+SS Q+D   RGFS+ + GPLD
Sbjct: 66  LLGDPR--FSFEQGPYDEVLWRMVGRGERADALLFDLGLSSFQVDDPRRGFSYTREGPLD 123

Query: 135 MRM-SCSGISASDVVNQANVKDLTRILGILGE--EKQASRIAHAIVKRRQSAPFQTTQDL 191
           MRM   SG SA+D +N A   ++  +L   G+    QA R+A  I++RR   P +TT DL
Sbjct: 124 MRMDPGSGPSAADFLNAAGEAEIAGVLSEYGDVPRAQARRVAREILRRR---PLRTTADL 180

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
              ++  V ++     +PA R FQA+RI VN+E+  L + L +AE+ L  GG L+V+SFH
Sbjct: 181 REAVRAAVGWAPRG-GNPAKRVFQAVRIRVNDELGGLRRALEAAERLLVPGGRLVVISFH 239

Query: 252 SLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           S EDRLVK+F A R G+      +      A P VF+     V+ P++ +VA N RS  A
Sbjct: 240 SGEDRLVKRFIAEREGRCTCPPELPVCVCGARP-VFR--RGPVLRPSEREVAENPRSAPA 296

Query: 310 KLRAGMRTVERSIE 323
           ++R   RT E + E
Sbjct: 297 RMRVAFRTAEPARE 310


>gi|108800230|ref|YP_640427.1| S-adenosyl-methyltransferase MraW [Mycobacterium sp. MCS]
 gi|119869358|ref|YP_939310.1| S-adenosyl-methyltransferase MraW [Mycobacterium sp. KMS]
 gi|122976793|sp|Q1B6W3|RSMH_MYCSS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262825146|sp|A1UI62|RSMH_MYCSK RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|108770649|gb|ABG09371.1| methyltransferase [Mycobacterium sp. MCS]
 gi|119695447|gb|ABL92520.1| S-adenosyl-methyltransferase MraW [Mycobacterium sp. KMS]
          Length = 324

 Score =  194 bits (493), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 123/310 (39%), Positives = 182/310 (58%), Gaps = 18/310 (5%)

Query: 19  DHVPVLLEKVIALLNPA-----P---GKVILDATFGAGGYSRSFCK--MGSNVIALDRDP 68
           +H+PVLL++ + LL PA     P   G V++DAT GAGG++  F     G ++I LDRDP
Sbjct: 2   EHIPVLLDRCVELLTPALTRRNPDGRGAVLVDATLGAGGHAHRFLSDLPGLHLIGLDRDP 61

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGF 125
            A+    E +  + ++ SL +  +  + D +   GV    G +FDLGVSSMQ+D  +RGF
Sbjct: 62  QALQIAGERLAPFGDRVSLVRTRYDGIDDALAQTGVAEVSGFLFDLGVSSMQLDRTERGF 121

Query: 126 SFQKSGPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           S+    PLDMRM S + ++A+DVVN    KD+TRIL   GEE+ A+RIA  IV+RR   P
Sbjct: 122 SYSADAPLDMRMDSDAPLTAADVVNTFAEKDITRILREFGEERFAARIAKHIVRRR---P 178

Query: 185 FQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
             TT +L  L+   +   ++    HPA R+FQALRI VN+E++ L   + +A  AL+ GG
Sbjct: 179 LNTTGELVELLYDAIPAPARRTGGHPAKRTFQALRIAVNSELDSLRAAVPAALAALETGG 238

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            ++V+++ SLEDR+VK  FA+ +         +    H   F ++T+     T E++  N
Sbjct: 239 RIVVMAYQSLEDRIVKTEFAAATASRTPPGLPVELPGHEPEFVALTRGAERATPEEIERN 298

Query: 304 RRSRSAKLRA 313
            RS   +LRA
Sbjct: 299 PRSAPVRLRA 308


>gi|206901857|ref|YP_002250979.1| S-adenosyl-methyltransferase MraW [Dictyoglomus thermophilum
           H-6-12]
 gi|263447293|sp|B5YEM1|RSMH_DICT6 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|206740960|gb|ACI20018.1| S-adenosyl-methyltransferase MraW [Dictyoglomus thermophilum
           H-6-12]
          Length = 297

 Score =  194 bits (493), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 113/305 (37%), Positives = 172/305 (56%), Gaps = 27/305 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNV-IALDRDPFAVSCGQE 76
           H PV+L++VI  LN +PGK+++DAT G GG+S    +   G  + I +DRD   +   +E
Sbjct: 8   HKPVMLKEVIHYLNLSPGKIVVDATLGLGGHSSEILRELRGEGLLIGIDRDEEVLKLARE 67

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK-SGP 132
            +      F LF  T+  LQ+ + +     +D ++FDLG SS  I+   RGFSF +   P
Sbjct: 68  RLSKIAGNFVLFNTTYDNLQNILKELNLSFIDAILFDLGFSSFHIEKSGRGFSFMRPEEP 127

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMR S  + ++A+D++N  +  +L+ +    GEE  + ++A  IV+RR+   F    DL
Sbjct: 128 LDMRYSKDTALTAADILNTFSESELSNLFWEYGEEPLSKKLAKKIVERRKDKKFAYVGDL 187

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             +I + +      R H AT+ FQALRI VN+E+    + L      L  GG ++V+++H
Sbjct: 188 LEVIDEVI---PRRRRHEATKVFQALRIAVNDELNIFKRALEQVPFILSIGGRIVVITYH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+VK FF S S K++ V                +KKV+ P+ E++  NRR+RSAKL
Sbjct: 245 SLEDRIVKNFFKSYSDKILPV----------------SKKVIKPSIEEIKENRRARSAKL 288

Query: 312 RAGMR 316
           R G R
Sbjct: 289 RVGER 293


>gi|113460496|ref|YP_718560.1| S-adenosyl-methyltransferase MraW [Haemophilus somnus 129PT]
 gi|123031127|sp|Q0I1E1|RSMH_HAES1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|112822539|gb|ABI24628.1| S-adenosyl-methyltransferase [Haemophilus somnus 129PT]
          Length = 319

 Score =  194 bits (493), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 127/318 (39%), Positives = 181/318 (56%), Gaps = 28/318 (8%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSR----SFCKMGSNVIALDRDPFAVSCG 74
           +H  VLL + +  L      + +D TFG GG+SR       K G  +IA+DRDP A+   
Sbjct: 9   EHFTVLLREAVGGLALKENGIYIDGTFGRGGHSRFILSQLSKKG-QLIAIDRDPQAIQVA 67

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           Q  ++D +  F +   +FS + D     G    +DG++ DLGVSS Q+D  +RGFSF K 
Sbjct: 68  Q-NIQDSR--FRIVHDSFSAIPDICEKLGLTGKIDGILLDLGVSSPQLDNAERGFSFMKD 124

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA------ 183
           GPLDMRM  + G+SA++ +   + +DL  +L   GEE+ A RIA AIV   +SA      
Sbjct: 125 GPLDMRMDTTQGLSATEWLRLVSEQDLAWVLKTFGEERFAKRIAQAIVGYNKSAVQSGAE 184

Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
           P   T  L+ LI ++V F K+   HPATRSFQA+RIF+N+E++EL + L  A   L   G
Sbjct: 185 PLNRTLQLAELIAQSVPF-KDKYKHPATRSFQAIRIFINSELDELEKVLNGALNVLAPQG 243

Query: 244 LLIVVSFHSLEDRLVKKFFASRSG-----KVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
            L ++SFHSLEDR+VK F   +S      K + +R       H    + +  K ++PT++
Sbjct: 244 RLSIISFHSLEDRMVKHFIRKQSKGDDLPKGLPLRE--EQIQHNQKLKPVG-KAIMPTEQ 300

Query: 299 DVAFNRRSRSAKLRAGMR 316
           ++A N RSRSA LR   R
Sbjct: 301 EMAANVRSRSAVLRIAER 318


>gi|311693447|gb|ADP96320.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [marine
           bacterium HP15]
          Length = 327

 Score =  194 bits (493), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 122/310 (39%), Positives = 178/310 (57%), Gaps = 19/310 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMG--SNVIALDRDPFAVSCGQE 76
           H  VLL+  +  L   P    +D TFG GG+SR    ++G  + ++ +D+DP A+   +E
Sbjct: 15  HRSVLLDSAVDYLVNDPDGYYVDGTFGRGGHSRLILGRLGPSARLLGIDKDPEAIRAAKE 74

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +     +F  F  +F++L   V  +G   V+GV+ DLGVSS Q+D   RGFSF + GPL
Sbjct: 75  -LEAQDNRFHSFHGSFAELGAAVVGQGWQTVNGVLLDLGVSSPQLDDASRGFSFMRDGPL 133

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+     SA++ +  A+  D+  ++   GEEK + RIA  +V+RRQ AP +TT+ L+
Sbjct: 134 DMRMNTEQSPSAAEWLATADESDIANVIFRYGEEKFSRRIARLLVERRQEAPVETTRQLA 193

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            L+ + V   K    HPATR+FQA+RIF+N E+E+L  GL+SA   L  GG L+V+SFHS
Sbjct: 194 ELVSEAVP-KKEKHKHPATRTFQAIRIFINRELEDLEVGLQSAVDHLAPGGRLVVISFHS 252

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS-----ITKKVVVPTQEDVAFNRRSR 307
           LEDRLVK+F      + +A    +P        Q      +  K      E+V+ N R+R
Sbjct: 253 LEDRLVKRFM-----RDLARGPQLPKGVPVTAEQEASDFRLVGKASKAGAEEVSDNVRAR 307

Query: 308 SAKLRAGMRT 317
           SA +R   RT
Sbjct: 308 SAVMRVLERT 317


>gi|238761549|ref|ZP_04622524.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia
           kristensenii ATCC 33638]
 gi|238700063|gb|EEP92805.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia
           kristensenii ATCC 33638]
          Length = 320

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 121/311 (38%), Positives = 181/311 (58%), Gaps = 15/311 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN     + +D TFG GG+SR    ++G    +IA+DRDP A+   + 
Sbjct: 14  HTSVLLDEAVNGLNIRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDRDPQAIEAAKS 73

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  +FS+    FS L  YV +      ++GV+ DLGVSS Q+D  +RGFSF + GP
Sbjct: 74  IT---DPRFSIVHGPFSDLAHYVRELDLVGRINGVLLDLGVSSPQLDDPERGFSFMRDGP 130

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G+SA+D + +A   D+  +L   GEE+ A R+A AIV+R  + P   T++L
Sbjct: 131 LDMRMDPTRGLSAADWLMKAGADDIAWVLKTFGEERFAKRLAKAIVERNLTQPMTRTKEL 190

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI     F + ++ HPATRSFQA+RI++N+E+EE+ + L  A + L   G L V+SFH
Sbjct: 191 ADLIANASPFREKHK-HPATRSFQAIRIYINSELEEIERALDGALEVLAPEGRLSVISFH 249

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSI-TKKVVVPTQEDVAFNRRSRS 308
           SLEDR+VK F    SR  +V A   +  +       +++ +   ++P   +VA N R+RS
Sbjct: 250 SLEDRIVKNFIRHHSRGPQVPAGLPLTEAQLRSMGGRTLKSAGKMMPPDAEVAENPRARS 309

Query: 309 AKLRAGMRTVE 319
           + LR   R  E
Sbjct: 310 SVLRFAERIKE 320


>gi|307824823|ref|ZP_07655046.1| S-adenosyl-methyltransferase MraW [Methylobacter tundripaludum
           SV96]
 gi|307734181|gb|EFO05035.1| S-adenosyl-methyltransferase MraW [Methylobacter tundripaludum
           SV96]
          Length = 308

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 123/310 (39%), Positives = 180/310 (58%), Gaps = 14/310 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC-- 73
           +H+PV+  + +  L      V LD TFG GG+S+    +      ++A DRD  A++   
Sbjct: 2   EHLPVMFAEALQQLAIKEDGVYLDCTFGRGGHSQGILNLLGPSGRLLAFDRDLDAINSDY 61

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQK 129
            Q  + D  ++F L    FS L++ V  +G    VDG++ DLGVSS Q+D  +RGFSF +
Sbjct: 62  AQAMLED--KRFKLKHTHFSALENIVVSEGLAGKVDGILMDLGVSSPQLDNPERGFSFLR 119

Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM   SG++A   +   + K L ++L   GEE+ A RIA AIV++R  +P  TT
Sbjct: 120 DGPLDMRMDGNSGVTAEQWLAGVDEKALVKVLFEYGEERFARRIARAIVEKRAVSPITTT 179

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           ++L+ LI+  V   K    HPATRSFQA+RI +N+E++EL   L+ + + LK GG L+V+
Sbjct: 180 RELAKLIEDVVP-GKEKHKHPATRSFQAIRIEINSELDELKAVLQQSARILKPGGRLVVI 238

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           SFHSLEDR+VK+F  + SG K    +  I           IT K +    +++A N R+R
Sbjct: 239 SFHSLEDRIVKRFIRAESGAKYNPGKLPIKEIDIAKGILKITGKALKAGAQEIAQNPRAR 298

Query: 308 SAKLRAGMRT 317
           SA +R   R 
Sbjct: 299 SAVMRVAERV 308


>gi|238060255|ref|ZP_04604964.1| S-adenosyl-methyltransferase mraW [Micromonospora sp. ATCC 39149]
 gi|237882066|gb|EEP70894.1| S-adenosyl-methyltransferase mraW [Micromonospora sp. ATCC 39149]
          Length = 366

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 115/310 (37%), Positives = 179/310 (57%), Gaps = 11/310 (3%)

Query: 18  GDHVPVLLEKVIALLNPAPGK----VILDATFGAGGYSRSFCKMGSN--VIALDRDPFAV 71
           G HVPVLLE+ + LL PA  +    V +DAT G  G++ +  +   +  +I LDRD  A+
Sbjct: 6   GTHVPVLLERCLELLAPALARGDRTVHVDATLGLAGHAEAVLERHPHTVLIGLDRDTEAL 65

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQ 128
           +  +  +  + ++  L  A + +L + +   G   +DGV+FDLGVSS+Q+D  DRGF++ 
Sbjct: 66  AHARVRLARFADRVHLEHAVYDELPEVLGRLGYPAIDGVLFDLGVSSLQLDAPDRGFAYA 125

Query: 129 KSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           +  PLDMRM    G++A +VVN  +  DL R+L + GEEK A RIA AI++ R+ A   +
Sbjct: 126 QDAPLDMRMDQTRGVTAEEVVNTYSHPDLARVLRVYGEEKFAPRIASAILRERERARITS 185

Query: 188 TQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           +  L+ L+++++   ++    HPA R+FQALRI VN E+  L   L +A   L  GG ++
Sbjct: 186 SARLAELVRESIPAPARRTGGHPAKRTFQALRIEVNRELAALETALPAALDKLTVGGRMV 245

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+S+HSLEDRL K     R      V   +        F+ +++   +P + +VA N R+
Sbjct: 246 VLSYHSLEDRLTKAALTDRVRSKGPVDLPVELPGSGPTFRLLSRGAELPGEAEVAANPRA 305

Query: 307 RSAKLRAGMR 316
            S +LRA  R
Sbjct: 306 ASVRLRAAER 315


>gi|308048060|ref|YP_003911626.1| S-adenosyl-methyltransferase MraW [Ferrimonas balearica DSM 9799]
 gi|307630250|gb|ADN74552.1| S-adenosyl-methyltransferase MraW [Ferrimonas balearica DSM 9799]
          Length = 315

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 126/308 (40%), Positives = 179/308 (58%), Gaps = 15/308 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H+ VLL++ +  L   P  + +D TFG GG+SR    ++G N  +I +DRDP AV+  Q+
Sbjct: 7   HITVLLDEAVNGLQLKPDGIYVDGTFGRGGHSRHILSQLGPNGRLIGIDRDPQAVAVAQQ 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              +   +F +    FS + +YV   G    +DGV+ DLGVSS Q+D  +RGFSF + GP
Sbjct: 67  LAAE-DPRFQIVHGPFSGIAEYVEALGLTGQIDGVLLDLGVSSPQLDDAERGFSFLRDGP 125

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA-PFQTTQD 190
           LDMRM  S G +A++ + +A   D+  +L   GEEK A  IA  IV+   +  P   T  
Sbjct: 126 LDMRMDNSRGETAAEWLARAEANDIAWVLKTFGEEKFARPIARKIVEHIAAGEPMDRTSH 185

Query: 191 LSSLIQK-TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ LI+K T    ++   HPATRSFQA+RI++N+E+EE+ + L  A +ALK GG L V+S
Sbjct: 186 LAGLIEKMTPKHKRDQGKHPATRSFQAIRIYINSELEEIEKALMGALEALKPGGRLSVIS 245

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK---KVVVPTQEDVAFNRRS 306
           FHSLEDRLVK+F   R  +   V H +P            K   K + P+  +V  N R+
Sbjct: 246 FHSLEDRLVKRFM-RRESQGEPVPHGLPLTEEQMKQTRRLKTVGKALKPSDTEVEDNTRA 304

Query: 307 RSAKLRAG 314
           RS+ LR G
Sbjct: 305 RSSVLRVG 312


>gi|290989161|ref|XP_002677211.1| predicted protein [Naegleria gruberi]
 gi|284090817|gb|EFC44467.1| predicted protein [Naegleria gruberi]
          Length = 300

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 125/312 (40%), Positives = 171/312 (54%), Gaps = 49/312 (15%)

Query: 38  KVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF-----SLFQA 90
           K+ +DATFGAGGY+R   +   G  VI +D D +     +E  +   E+F      +   
Sbjct: 16  KLFIDATFGAGGYTREILRAYPGCKVIGIDTDYYNNPTIKENEKLIHEEFGKERLEVHCV 75

Query: 91  TFSQLQDYVPDKGV-----------DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
            F +++  V +K V           DG+VFDLGVSSMQ+D G RGFSF + GPL      
Sbjct: 76  NFREIKKVVQEKIVPQLKSDTSNVIDGIVFDLGVSSMQLDQGHRGFSFLREGPL------ 129

Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA-PFQTTQDLSSLIQKT 198
               A DVVN  +  DL  ++   GE+ +A RIA AIV  R +  PF+TT +L++LI+K 
Sbjct: 130 ----ARDVVNNMSELDLRIMITKFGEDDKAYRIAKAIVDYRNNVKPFETTLELANLIEKI 185

Query: 199 VYFS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG-GLLIVVSFHSLED 255
             F   K  RIHPAT++FQA+RIFVN+E+  L   L +++  LK G G L+VVS+HSLED
Sbjct: 186 TPFHERKKKRIHPATKTFQAIRIFVNDELSALQNALYASKDILKIGTGRLVVVSYHSLED 245

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           R+ K F                       F+ ITK  ++P   +V FN RSRSAKLR   
Sbjct: 246 RITKDFMKENQDS----------------FKKITKGTIIPDDAEVEFNVRSRSAKLRCAQ 289

Query: 316 RTVERSIEDDSF 327
           R VE +  D+ +
Sbjct: 290 R-VENNRTDEDY 300


>gi|229514038|ref|ZP_04403500.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae TMA 21]
 gi|229349219|gb|EEO14176.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae TMA 21]
          Length = 316

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 123/309 (39%), Positives = 174/309 (56%), Gaps = 20/309 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H+ VLL + I  L   P  + +D TFG GG+SR+   ++G    + ++DRDP A++  Q+
Sbjct: 7   HISVLLNESIEGLAIKPDGIYIDGTFGRGGHSRTILAQLGPEGRLYSIDRDPQAIAEAQK 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  +F++    FS + +Y         VDGV+FDLGVSS Q+D  +RGFSF K GP
Sbjct: 67  I---DDPRFTIVHGPFSGIAEYAQRYDLVGKVDGVLFDLGVSSPQLDDAERGFSFMKDGP 123

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---PFQTT 188
           LDMRM   SG+  S  + QA++ D+T ++   GE+K A RIA AIV+ R++    P   T
Sbjct: 124 LDMRMDPTSGMPVSAWLAQADLDDITWVIREFGEDKHARRIAKAIVEYRENELNEPLTRT 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ LI      S   + HPATR+FQA RI++N+E+EE+   L  A   L   G L V+
Sbjct: 184 SQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALCGASDILAPQGRLSVI 243

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSN-----AHPAVFQSITKKVVVPTQEDVAFN 303
           SFHSLEDR+VK+F    S +   V H IP       A  +       K + P+ ++V  N
Sbjct: 244 SFHSLEDRMVKRFMRKES-QGPQVPHGIPLTQDQIRALGSAKMKTVGKALKPSDQEVELN 302

Query: 304 RRSRSAKLR 312
            RSRS+ LR
Sbjct: 303 PRSRSSVLR 311


>gi|28373611|pdb|1M6Y|A Chain A, Crystal Structure Analysis Of Tm0872, A Putative Sam-
           Dependent Methyltransferase, Complexed With Sah
 gi|28373612|pdb|1M6Y|B Chain B, Crystal Structure Analysis Of Tm0872, A Putative Sam-
           Dependent Methyltransferase, Complexed With Sah
 gi|28373847|pdb|1N2X|A Chain A, Crystal Structure Analysis Of Tm0872, A Putative Sam-
           Dependent Methyltransferase, Complexed With Sam
 gi|28373848|pdb|1N2X|B Chain B, Crystal Structure Analysis Of Tm0872, A Putative Sam-
           Dependent Methyltransferase, Complexed With Sam
          Length = 301

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 114/309 (36%), Positives = 182/309 (58%), Gaps = 29/309 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77
           H+PV + +VI  L P   K+ILD T G GG+SR+  +   G  +I +D D   +   +E 
Sbjct: 10  HIPVXVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEK 69

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++++ ++ SLF+ ++ +    +   G   VDG++ DLGVS+ Q+   +RGF+F++  PLD
Sbjct: 70  LKEFSDRVSLFKVSYREADFLLKTLGIEKVDGILXDLGVSTYQLKGENRGFTFEREEPLD 129

Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQ-ASRIAHAIVKRRQSAPFQTTQDLS 192
            R    S ++A  V+N+   ++L RI+   GEEK+ A RIA  IV+ R   P  TT DL 
Sbjct: 130 XRXDLESEVTAQKVLNELPEEELARIIFEYGEEKRFARRIARKIVENR---PLNTTLDLV 186

Query: 193 SLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +++ +  Y  +  + H AT++FQA+RI+VN E+E L + L+ AE  L  GG ++V+SF
Sbjct: 187 KAVREALPSYEIRRRKRHFATKTFQAIRIYVNRELENLKEFLKKAEDLLNPGGRIVVISF 246

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDR+VK+ F  R+ K + +               +T+K V P++E++  N R+RS +
Sbjct: 247 HSLEDRIVKETF--RNSKKLRI---------------LTEKPVRPSEEEIRENPRARSGR 289

Query: 311 LRAGMRTVE 319
           LRA  R  E
Sbjct: 290 LRAAERIEE 298


>gi|227544880|ref|ZP_03974929.1| S-adenosyl-methyltransferase [Lactobacillus reuteri CF48-3A]
 gi|300909900|ref|ZP_07127360.1| S-adenosyl-methyltransferase MraW [Lactobacillus reuteri SD2112]
 gi|154705578|gb|ABS84215.1| S-adenosyl-methyltransferase MraW [Lactobacillus reuteri]
 gi|227185154|gb|EEI65225.1| S-adenosyl-methyltransferase [Lactobacillus reuteri CF48-3A]
 gi|300892548|gb|EFK85908.1| S-adenosyl-methyltransferase MraW [Lactobacillus reuteri SD2112]
          Length = 318

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 121/305 (39%), Positives = 183/305 (60%), Gaps = 13/305 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77
           HV VLL++ +A LN  P    +DAT G GG++++  +  +  ++ + D+D  A++  +E 
Sbjct: 6   HVTVLLKEAVAGLNVQPTGTYVDATLGGGGHTQAILQQLVDGHLYSFDQDQTAINYNKEQ 65

Query: 78  MRDYKEQ--FSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           ++   EQ   +L +  F  L+   D    K V+G+++DLGVSS Q D   RGFS+Q   P
Sbjct: 66  LKTAIEQQKLTLIEDNFRNLKAELDSYNVKHVNGILYDLGVSSPQFDDAKRGFSYQHDAP 125

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+    +SA +VVN+ + + L +IL   GEEK A  IA  I +RR+ AP +TT +L
Sbjct: 126 LDMRMNQEQKLSAMEVVNEWSYERLVKILYRYGEEKFAKSIARKIEQRRKIAPIKTTFEL 185

Query: 192 SSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I++ +   ++ +  HPA +SFQA+RI VN+E+  L + L  A   L  GG + V++F
Sbjct: 186 VDVIKEGIPAAARRHGGHPAKKSFQAIRIAVNDELGALEESLEQALDLLDVGGRISVITF 245

Query: 251 HSLEDRLVKKFF---ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
            SLEDRLVK  F    S SG V     +IP+   P  F+ I KK +V ++E++A N R+ 
Sbjct: 246 QSLEDRLVKTMFREKTSLSGDVPQGLPVIPAGMEPN-FKLINKKPIVASEEELAANHRAH 304

Query: 308 SAKLR 312
           SAKLR
Sbjct: 305 SAKLR 309


>gi|50955157|ref|YP_062445.1| S-adenosyl-methyltransferase [Leifsonia xyli subsp. xyli str.
           CTCB07]
 gi|54036175|sp|Q6AE56|RSMH_LEIXX RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|50951639|gb|AAT89340.1| S-adenosyl-methyltransferase [Leifsonia xyli subsp. xyli str.
           CTCB07]
          Length = 325

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 125/325 (38%), Positives = 177/325 (54%), Gaps = 13/325 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIA 63
           MS  IH  I  H+PVLLE+ I LL PA   PG VI+DAT G GG+S         + ++ 
Sbjct: 1   MSDDIHGDI--HLPVLLERCIELLAPALQEPGAVIVDATLGMGGHSAGILARFPQATLVG 58

Query: 64  LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDC 120
           LDRDP A++   E +  + ++  L    +  +++ +   G   V GV+FDLGVSS+Q+D 
Sbjct: 59  LDRDPDALAIAGERLARFGDRVHLVHTVYDGIREALDGLGIAEVQGVLFDLGVSSLQLDR 118

Query: 121 GDRGFSFQKSGPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS+ K  PLDMRM   S ++A  V+ +    DL RI    GEEK A+R A  IV  
Sbjct: 119 VERGFSYSKDAPLDMRMDGTSDLTAERVLAEYPEADLRRIFRDYGEEKLAARYAQRIVAA 178

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
           RQ  P   + +L  L+Q+    +   + HPA R FQALRI VN E+  L + L +A  AL
Sbjct: 179 RQQGPITRSGELVHLLQRATPAAIARQGHPAKRVFQALRIEVNQELAVLERALPAAVDAL 238

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
             GG L+V S+ SLEDR+VK+   +RS         +    H    + + +   +   ++
Sbjct: 239 AVGGRLVVESYQSLEDRIVKRELQTRSRSSAPAGLPVELPEHRPELRLLIRGAELADDDE 298

Query: 300 VAFNRRSRSAKLRAGMRTVERSIED 324
            A N R+   +LRA  RT  R+ ED
Sbjct: 299 KAANPRAAPVRLRAAERT--RASED 321


>gi|229588482|ref|YP_002870601.1| S-adenosyl-methyltransferase MraW [Pseudomonas fluorescens SBW25]
 gi|262825100|sp|C3KCS2|RSMH_PSEFS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|229360348|emb|CAY47205.1| S-adenosyl-methyltransferase [Pseudomonas fluorescens SBW25]
          Length = 315

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 120/308 (38%), Positives = 183/308 (59%), Gaps = 20/308 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQ 75
           +H+ VLL++ +  L        LD TFG GG+SR    ++GS+  ++  D+DP A++ GQ
Sbjct: 8   NHITVLLDEAVEALAVRADGCYLDGTFGRGGHSRLILSQLGSDGKLLGFDKDPQAIATGQ 67

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
             +     +F + Q +F++L   V ++G    V GV+ DLGVSS Q+D  +RGFSF   G
Sbjct: 68  -ALAAEDGRFVVVQRSFAELGAEVAERGMAGKVAGVLLDLGVSSPQLDDPERGFSFMNDG 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + G+SA+  +  A V+++ R+    GEE+ A R+A A+V+RR+  PF+ T D
Sbjct: 127 PLDMRMDPTRGVSAAQFIATAPVEEIARVFKEYGEERFAGRMARAVVERREIQPFERTAD 186

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ ++ K    +     +PATR+FQ LRI VNNE+ +L  GL +A +AL+ GG L+V+SF
Sbjct: 187 LAEVL-KVANPAWEKGKNPATRAFQGLRIHVNNELGDLEAGLEAALEALEVGGRLVVISF 245

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVV------PTQEDVAFNR 304
           HSLEDR+VK F       V      +P N  P  F++   K+ +       ++ ++  N 
Sbjct: 246 HSLEDRIVKLFMRR---LVKGESDNLPRNL-PVRFEAFVPKIKIHGKAQFASEAELKANP 301

Query: 305 RSRSAKLR 312
           RSRSA +R
Sbjct: 302 RSRSAVMR 309


>gi|159900036|ref|YP_001546283.1| S-adenosyl-methyltransferase MraW [Herpetosiphon aurantiacus ATCC
           23779]
 gi|263456121|sp|A9B518|RSMH_HERA2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|159893075|gb|ABX06155.1| S-adenosyl-methyltransferase MraW [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 337

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 116/333 (34%), Positives = 187/333 (56%), Gaps = 32/333 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN----VIALDRDPFAVSCGQ 75
           H+PVL +  +A LN  P    +D T G  G+S    + GS     ++A+D+DP A++  +
Sbjct: 5   HIPVLYDAALAALNLRPDGRYIDGTLGWAGHSSGILE-GSGPTGRLLAIDQDPMALAAAR 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E +  Y E+ ++    + Q+       G   VDG++ D+GVSS Q+D  +RGFSFQ   P
Sbjct: 64  ERLAPYGERATIVHGNYRQMASLAAQHGWQQVDGILLDIGVSSPQLDLPERGFSFQYDAP 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+ + G SA+D++ Q +   L  ++   GEE+ + RIA  IV++R  +P  +T  L
Sbjct: 124 LDMRMNPTRGESAADLIAQLDETSLANLIYEYGEERLSRRIARRIVEQRSKSPITSTAQL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           +SL+ K+    +  + HPATR+FQALRI VN+E+  L +GL +A   L  GG L V++FH
Sbjct: 184 ASLV-KSAVGGQAGKTHPATRTFQALRIAVNDELGALREGLAAATNLLAPGGRLAVITFH 242

Query: 252 SLEDRLVKKFFASRSG--------KVMAVRHMIPSNAHP--------------AVFQSIT 289
           SLEDR+VK++   ++         +++A  H   +N  P                 + ++
Sbjct: 243 SLEDRIVKEWMRDQASECLIPAKLEILACPHNCAANTGPRSCIYPVGRDCDYVPTLEVLS 302

Query: 290 KKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSI 322
           +K +  T E++  N R+RSAKLR   R + +++
Sbjct: 303 RKPIEATPEELKANPRARSAKLRVAERRLTKTL 335


>gi|325067114|ref|ZP_08125787.1| S-adenosyl-methyltransferase MraW [Actinomyces oris K20]
          Length = 319

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 112/271 (41%), Positives = 169/271 (62%), Gaps = 24/271 (8%)

Query: 17  IGDHVPVLLEKVIALLNPA------------PGK-VILDATFGAGGYSRSFCKMGSN--V 61
           +G H PVLLE+ + LL PA            P + V++D T G GG++ +  +  +   V
Sbjct: 14  VGRHEPVLLERCLDLLAPAIEGAVSSTSTTAPARPVMIDCTLGMGGHTEAALERFTTLKV 73

Query: 62  IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL-----QDYVPDKG-VDGVVFDLGVSS 115
           + +DRDP A++     +  + ++F   QAT+  +     +  V  +G VD V+ DLGVSS
Sbjct: 74  VGIDRDPEAIALASARLARFGDRFIAVQATYDAVGRVAREHSVRAEGTVDAVLMDLGVSS 133

Query: 116 MQIDCGDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAH 174
           +Q+D   RGFS+ ++ PLDMRM   SG++A D++  A+  +LTRIL   GEE+ ASRIA 
Sbjct: 134 LQLDEASRGFSYARTAPLDMRMDQSSGMTAQDLLESADAAELTRILRTYGEERFASRIAA 193

Query: 175 AIVKRRQSA-PFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGL 232
           AIV+RR+S  P  +TQDL+ L++++V   ++ N  HPA R+FQALRI VN E++ L + +
Sbjct: 194 AIVRRRESGQPVTSTQDLAELVRQSVPAAARRNGGHPAKRTFQALRIAVNAELDVLERAV 253

Query: 233 RSAEKALKAGGLLIVVSFHSLEDRLVKKFFA 263
             A  +L+ GG L+V S+ SLEDR+VK+  A
Sbjct: 254 PRALNSLRVGGRLVVESYQSLEDRIVKRALA 284


>gi|257056486|ref|YP_003134318.1| S-adenosyl-methyltransferase MraW [Saccharomonospora viridis DSM
           43017]
 gi|256586358|gb|ACU97491.1| S-adenosyl-methyltransferase MraW [Saccharomonospora viridis DSM
           43017]
          Length = 327

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 119/320 (37%), Positives = 185/320 (57%), Gaps = 22/320 (6%)

Query: 20  HVPVLLEKVIALLNPAPGK---VILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCG 74
           H+PVL+++V+ L  PA      +++D T G GG++ +         VI LDRDP A+   
Sbjct: 16  HLPVLVDRVLELFEPAVSDRDAILVDTTLGLGGHTEALLSAYPRLRVIGLDRDPEALERS 75

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +  +  Y  +       + +++D + +     V+GV+ DLGVSSMQ+D  DRGF++ ++ 
Sbjct: 76  RRRLARYGSRVQFVHTVYDRIRDVLAELDVPAVEGVLMDLGVSSMQLDRDDRGFAYARNA 135

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM   +GI+A+DV+N  +V +LTR+L   GEE+ A RIA A+V  R+  PF T++ 
Sbjct: 136 PLDMRMDPTTGITAADVLNTYSVDELTRVLRDYGEERFARRIAKAVVAERKREPFDTSER 195

Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  L+  TV   S+    HPA R+FQALRI VN E++ L   + +A  +L  GG ++V S
Sbjct: 196 LVRLLYATVPAGSRRTGGHPAKRTFQALRIEVNGELDILRAAVPAAIDSLAVGGRIVVES 255

Query: 250 FHSLEDRLVKKFF----ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           +HSLEDR+VK+       SR+ + + V   +P   H    + +T+      +E++  N R
Sbjct: 256 YHSLEDRIVKQALTRAATSRTPEGLPVE--LP--GHGPKLRLLTRGAEKADEEEIRRNPR 311

Query: 306 SRSAKLRAGMRTVERSIEDD 325
           + S +LRA     E+  EDD
Sbjct: 312 AASVRLRAA----EKRGEDD 327


>gi|242018707|ref|XP_002429815.1| S-adenosyl-methyltransferase mraW, putative [Pediculus humanus
           corporis]
 gi|212514833|gb|EEB17077.1| S-adenosyl-methyltransferase mraW, putative [Pediculus humanus
           corporis]
          Length = 382

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 121/331 (36%), Positives = 170/331 (51%), Gaps = 33/331 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H PV+L +VI  L+   G + LD TFG+GG+S        +  ++ALDRDP A       
Sbjct: 50  HEPVMLNEVIKNLDLKKGNLFLDMTFGSGGHSLELLNRVPDLKILALDRDPIAYEYALNA 109

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              + +        FS L   + D  +     DG++ DLG SSMQ D  +RGFS    GP
Sbjct: 110 KEKHPDNIYPLLGKFSDLPKLLNDNNIKANTIDGILLDLGCSSMQFDTPERGFSINNDGP 169

Query: 133 LDMRMSCSGI----SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQT 187
           LDMRM C  I    +A DV+  A   +L  I    GEEK++ +IA AI + R +  P +T
Sbjct: 170 LDMRMDCDRIKGSLTAGDVIAHATEMELYNIFKKYGEEKRSRKIARAITQMRNTFKPIKT 229

Query: 188 TQDLSSLIQKTV----YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
           T+DL+ LI   +    Y   N +    T+ FQALRIFVNNE+ EL   +  A   LK G 
Sbjct: 230 TKDLNDLISVVLTDVRYDKLNRKTGTGTKIFQALRIFVNNELNELNYAMTLAHHYLKVGS 289

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA---------------HPAVFQSI 288
             +V++FHSLED +VK+ F ++    +     +P N                +   +  +
Sbjct: 290 RAVVLTFHSLEDVIVKRHFKNQHQ--LNYVQNLPLNMINSLKTYDECEFNSFNKQYWIPV 347

Query: 289 TKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319
            KKV++P   +V  N RSRSAKLRA ++T E
Sbjct: 348 NKKVLIPDSFEVCNNPRSRSAKLRAAIKTQE 378


>gi|85058419|ref|YP_454121.1| S-adenosyl-methyltransferase MraW [Sodalis glossinidius str.
           'morsitans']
 gi|123520087|sp|Q2NVV9|RSMH_SODGM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|84778939|dbj|BAE73716.1| conserved hypothetical protein [Sodalis glossinidius str.
           'morsitans']
          Length = 315

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 123/306 (40%), Positives = 180/306 (58%), Gaps = 17/306 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN  P  V LD TFG GG+SR    K+G+   + A+DRDP A+   + 
Sbjct: 7   HTTVLLDEAVKGLNLRPDSVYLDGTFGRGGHSRLILSKLGAQGRLFAIDRDPAAIEAARA 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  +F++    FS + +Y+  +     VDG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 67  IE---DARFAIIHGPFSAMAEYMAQRDLLGKVDGILLDLGVSSPQLDDPERGFSFMRDGP 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G SA+  + QA+ +D+  +L   GEE+ A RIA AIV   +  P   T++L
Sbjct: 124 LDMRMDTTRGQSAAQWLAQASAEDIAWVLKTFGEERFAKRIAQAIVAHNRQQPMTRTREL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           ++LI     F   ++ HPATRSFQA+RI++N+E+EE+ + L  A   L  GG L V+SFH
Sbjct: 184 AALIADASPFRDKHK-HPATRSFQAIRIYINSELEEIERALDGALTVLAPGGRLSVISFH 242

Query: 252 SLEDRLVKKFFA--SRSGKVMAVRHMIPSN-AHPAVFQSITKKV--VVPTQEDVAFNRRS 306
           SLEDRLVK+F    SR  +V A   +  +  A     Q + K    + P+  +++ N R+
Sbjct: 243 SLEDRLVKQFIRQHSRGPQVPAGLPLTEAQIAAQYQDQRLLKAAGKMQPSAREISDNPRA 302

Query: 307 RSAKLR 312
           RS+ LR
Sbjct: 303 RSSVLR 308


>gi|308173479|ref|YP_003920184.1| S-adenosyl-dependent methyltransferase [Bacillus amyloliquefaciens
           DSM 7]
 gi|307606343|emb|CBI42714.1| S-adenosyl-dependent methyltransferase active on membrane-located
           substrates [Bacillus amyloliquefaciens DSM 7]
 gi|328553591|gb|AEB24083.1| 16S rRNA m(4)C1402 methyltranserfase [Bacillus amyloliquefaciens
           TA208]
 gi|328911615|gb|AEB63211.1| S-adenosyl-dependent methyltransferase active on membrane-located
           substrates [Bacillus amyloliquefaciens LL3]
          Length = 311

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 116/303 (38%), Positives = 177/303 (58%), Gaps = 11/303 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H  VLL + +  LN  P    +D T G  G+S    +  S    +IA D+D  A+   ++
Sbjct: 4   HKTVLLRETVDGLNIKPDGTYVDCTLGGAGHSTYLLQQLSEKGRLIAFDQDDTALENAKQ 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           T+ +YK Q  L ++ F  L++ + + G   VDG++FDLGVSS Q+D  +RGFS+    PL
Sbjct: 64  TLSEYKGQLILVKSNFRYLKECLHEHGITSVDGILFDLGVSSPQLDTPERGFSYHHDAPL 123

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  S  ++A +VVN+   +DL RI    GEEK + +IA  I + R+ +P QTT  L 
Sbjct: 124 DMRMDQSAALTAKEVVNEWRYEDLVRIFFKYGEEKFSKQIARKIEEAREKSPIQTTGQLV 183

Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            LI+  +   ++ +  HPA R FQA+RI VN+E++   + L  A + LK GG + V++FH
Sbjct: 184 DLIKDAIPAPARRSGGHPAKRVFQAIRIAVNDELQVFEEALLQAIEVLKPGGRVSVITFH 243

Query: 252 SLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+ K  F  +S   ++     +IP    P + + IT+K +  ++E++  N R+RSA
Sbjct: 244 SLEDRMCKTTFKEKSSLPELPPGLPVIPEEFEPEL-KLITRKPITASKEELEENNRARSA 302

Query: 310 KLR 312
           KLR
Sbjct: 303 KLR 305


>gi|83589686|ref|YP_429695.1| methyltransferase [Moorella thermoacetica ATCC 39073]
 gi|123524773|sp|Q2RK87|RSMH_MOOTA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|83572600|gb|ABC19152.1| methyltransferase [Moorella thermoacetica ATCC 39073]
          Length = 318

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 125/309 (40%), Positives = 185/309 (59%), Gaps = 9/309 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQE 76
           H PVLL +V+ LL+P PG+  +DAT G GG+SR+       G +++ LDRD  AV+  +E
Sbjct: 5   HQPVLLTEVLHLLDPQPGEFFVDATVGGGGHSRAILPRLLPGGHLLGLDRDAEAVAAARE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  +     + QA F  L   +  +G   VDG++FDLGVSS Q+D  +RGFS+Q   PL
Sbjct: 65  RLAAFGANVEIVQANFRDLAAILEARGIPGVDGLLFDLGVSSYQLDNPERGFSYQVDAPL 124

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     ++A++VVN    + LTR++   GEE+ A RIA  IV  R+  P  TT  L 
Sbjct: 125 DMRMGQDQELTAAEVVNNWPEEKLTRVIWQYGEERWAPRIAAFIVASRRQRPITTTGQLV 184

Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           ++I++ +   ++ +  HPA R+FQALRI +N E++ L   L   +  LK GG + V+SFH
Sbjct: 185 AIIKEAIPAGARRSGHHPAKRTFQALRIAINGELDALRAALEQLDSILKPGGRVGVISFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK+ F S SG+      + + +     V   +T+K V+PT  ++  N R+RSAK
Sbjct: 245 SLEDRIVKEAFRSLSGRCTCPPGLPVCTCGRREVLVPVTRKPVIPTAAEIVANPRARSAK 304

Query: 311 LRAGMRTVE 319
           LR   R ++
Sbjct: 305 LRVARRVLK 313


>gi|283458388|ref|YP_003363012.1| putative S-adenosylmethionine-dependent methyltransferase [Rothia
           mucilaginosa DY-18]
 gi|283134427|dbj|BAI65192.1| predicted S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [Rothia mucilaginosa DY-18]
          Length = 354

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 116/309 (37%), Positives = 175/309 (56%), Gaps = 15/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVI--------LDATFGAGGYSRSFCKMGSNV--IALDRDPF 69
           HVPV+L++ I LL P   + +        +D T G GG+S +  +   N+  I +DRD  
Sbjct: 37  HVPVMLDRCINLLAPGIERAVEERGTAYVIDGTLGMGGHSEALLERFENLVLIGIDRDLQ 96

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFS 126
           A +   E +  + E+F    A + ++   +     +G+DG++ DLGVSSMQ+D   RGF+
Sbjct: 97  AHAIAGERLARFGERFVPVHAVYDEIDRAMETAGVQGIDGILMDLGVSSMQLDERTRGFA 156

Query: 127 FQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           +    PLDMRM+    ++A  VVN+ +   L RI+   GEEK ASRIA AI   R +AP 
Sbjct: 157 YSYDAPLDMRMNSEDELTARIVVNEYSEDQLRRIIRNWGEEKFASRIARAICTARANAPL 216

Query: 186 QTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           +TT +L  +IQK V   ++    HPA R+FQALRI VN+E+E L + + +A +AL  GG 
Sbjct: 217 ETTGELVRIIQKAVPVAAQRTGGHPAKRTFQALRIEVNHELEALERAVPAALEALNLGGR 276

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
            + +S+HSLED++VK+   + +         +    H    + IT+    PT E++  N 
Sbjct: 277 FVAMSYHSLEDKIVKRALTAEATSKAPKGFPVELEEHKPTVKIITRGAEPPTDEEIEQNS 336

Query: 305 RSRSAKLRA 313
           R+ SAKLRA
Sbjct: 337 RAASAKLRA 345


>gi|257068256|ref|YP_003154511.1| S-adenosyl-methyltransferase MraW [Brachybacterium faecium DSM
           4810]
 gi|256559074|gb|ACU84921.1| S-adenosyl-methyltransferase MraW [Brachybacterium faecium DSM
           4810]
          Length = 331

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 118/311 (37%), Positives = 176/311 (56%), Gaps = 13/311 (4%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74
           HVPVLL+  + LL PA    G V +DAT G GG++ +       ++++ +DRDP A++  
Sbjct: 14  HVPVLLDTSVQLLAPALQDAGAVHVDATLGMGGHAAAVLHAAPRAHLVGIDRDPQALALA 73

Query: 75  QETM--RDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
           +E +      E+ +L  AT+ Q+ + + D    G  GV+ DLG+SS QID  DRGFS+  
Sbjct: 74  RERLDREGVGERATLVHATYDQIPEVLEDLGLPGAHGVMMDLGLSSFQIDTADRGFSYAV 133

Query: 130 SGPLDMRMSCS--GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
             PLDMRM  S  G +A+D++      ++ RIL  LG+E+ A RIA  +V++R+SAP   
Sbjct: 134 DAPLDMRMDTSSDGPTAADLLRDLPEAEIARILRDLGDERFAKRIARRVVQQRESAPLTR 193

Query: 188 TQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           + +L +L+++ +   SK +  HPA R+FQALRI VN E+E LA  L SA   +  GG ++
Sbjct: 194 SGELVALLERAIPAASKASGGHPAKRTFQALRIAVNEELEILASALESALDCVHVGGRIV 253

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V S+HS EDRLVK  F  R          +    H   F  + +  +   + +   N R+
Sbjct: 254 VESYHSGEDRLVKTAFTRRIRSSAPPGLPVELEEHKPTFSPLVRGALQADEHERGSNSRA 313

Query: 307 RSAKLRAGMRT 317
            S +LRA  RT
Sbjct: 314 ASVRLRALTRT 324


>gi|310659206|ref|YP_003936927.1| s-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Clostridium sticklandii DSM 519]
 gi|308825984|emb|CBH22022.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Clostridium sticklandii]
          Length = 310

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 113/310 (36%), Positives = 176/310 (56%), Gaps = 18/310 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77
           HV VLL + + +L+  P  + +D T G  G+S    K      +I  D+D  A+S  +E 
Sbjct: 5   HVTVLLNEAVDILDIKPDGIYVDGTLGGAGHSLEIVKKLTSGKLICFDQDINAISAAKEK 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++D+ ++  L  + F  L++ +   G+   DG + DLGVSS Q+D  +RGFS+ +  PLD
Sbjct: 65  LKDFMDKTILVHSNFENLREELNKLGIETIDGFLVDLGVSSHQLDVPERGFSYMQDAPLD 124

Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM  +  +SA DVVN  +  +L R++   GEE  ++RIA  IV+RR + P +TT +L  
Sbjct: 125 MRMDNNAELSAYDVVNTYSEAELKRVIKDYGEENWSARIAKIIVERRTTMPIRTTFELVD 184

Query: 194 LIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            I+  +    ++   HPA R+FQA+RI VN E++ + + L +A   +  GG+L V++FHS
Sbjct: 185 AIKAAIPKKMRDENQHPAKRTFQAIRIEVNRELDVIEKTLLAAVDMMNEGGVLAVITFHS 244

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSN------AHPAVFQSITKKVVVPTQEDVAFNRRS 306
           LEDR+VK  F     K +      P            V + IT+K ++P++ +V  N RS
Sbjct: 245 LEDRIVKNVF-----KKLQYSCTCPPEFPVCICNSKQVVEIITRKPILPSENEVEMNPRS 299

Query: 307 RSAKLRAGMR 316
           RSAKLRA  +
Sbjct: 300 RSAKLRAARK 309


>gi|238927330|ref|ZP_04659090.1| S-adenosylmethionine-dependent methyltransferase involved in cell
           envelope biogenesis [Selenomonas flueggei ATCC 43531]
 gi|238884612|gb|EEQ48250.1| S-adenosylmethionine-dependent methyltransferase involved in cell
           envelope biogenesis [Selenomonas flueggei ATCC 43531]
          Length = 312

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 124/303 (40%), Positives = 166/303 (54%), Gaps = 12/303 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           HV VLLE+ +  LN  P  + +DAT G  G++R      S    +I +D+D  A++   E
Sbjct: 6   HVSVLLEETVGALNVMPDGIYVDATLGGAGHARRIAAHLSEHGRLIGIDQDETAIAAAHE 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + D + Q SL +  F  L   +  +GV   DGV+FDLGVSS QID  +RGFS+ +  PL
Sbjct: 66  RLADVRCQVSLVRDNFRNLSAILAAEGVFSVDGVLFDLGVSSPQIDTPERGFSYMQDAPL 125

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     +SA DVVN    + LT I    GEE+ A RIA  I K RQ+ P  TT DL 
Sbjct: 126 DMRMDQRARLSAYDVVNAYTAEQLTEIFYTYGEERWAKRIAAFIEKERQAHPIATTGDLV 185

Query: 193 SLIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           ++I + V      R  HPA R FQA+RI VN+E+  L   L +A  AL+ GG L V++FH
Sbjct: 186 AVIDRAVPKEVRARGGHPAKRVFQAIRIEVNDELGILEGALSAAVNALRIGGRLAVITFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK      +   +   H  +      P V   +  K     +E+ A N R+RSA
Sbjct: 246 SLEDRIVKNTLRRLAQGCICPPHTPVCVCGHTPEV--RLVGKAKAAGKEECAANTRARSA 303

Query: 310 KLR 312
           KLR
Sbjct: 304 KLR 306


>gi|260773502|ref|ZP_05882418.1| S-adenosyl-methyltransferase MraW [Vibrio metschnikovii CIP 69.14]
 gi|260612641|gb|EEX37844.1| S-adenosyl-methyltransferase MraW [Vibrio metschnikovii CIP 69.14]
          Length = 316

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 125/310 (40%), Positives = 175/310 (56%), Gaps = 22/310 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           HV VLL + I  L   P  + +D TFG GG+SR+   ++G    + ++DRDP A++   E
Sbjct: 7   HVSVLLHESIDGLAIKPDGIYIDGTFGRGGHSRTILAQLGPEGRLYSIDRDPQAIA---E 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +    +F++    FS + +Y         VDGV+FDLGVSS Q+D  +RGFSF K GP
Sbjct: 64  ASKIDDPRFTIIHGPFSGIAEYAQRYNLQGQVDGVLFDLGVSSPQLDDAERGFSFMKDGP 123

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---PFQTT 188
           LDMRM   SG+S +  +  A + D+T ++   GE+K A RIA AIV  R +    P   T
Sbjct: 124 LDMRMDPNSGVSVAQWLLTAELDDITWVIREFGEDKHARRIAKAIVAHRDNPDNEPLTRT 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ LI +    S   + HPATR+FQA RI++N+E+EE+   L+ A   L   G L V+
Sbjct: 184 SQLAKLISEAAPKSFKEKKHPATRTFQAFRIYINSELEEIDIALQGAASILAPQGRLSVI 243

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH------PAVFQSITKKVVVPTQEDVAF 302
           SFHSLEDR+VK+F    S K   V H +P           A  ++I  K + P+  +VA 
Sbjct: 244 SFHSLEDRMVKRFIRKES-KGPDVPHGLPLTQDQIKALGSAKLKAIG-KAIKPSDHEVAL 301

Query: 303 NRRSRSAKLR 312
           N RSRS+ LR
Sbjct: 302 NPRSRSSVLR 311


>gi|70732392|ref|YP_262148.1| S-adenosyl-methyltransferase MraW [Pseudomonas fluorescens Pf-5]
 gi|88909211|sp|Q4K6I5|RSMH_PSEF5 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|68346691|gb|AAY94297.1| S-adenosyl-methyltransferase MraW [Pseudomonas fluorescens Pf-5]
          Length = 315

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 119/308 (38%), Positives = 182/308 (59%), Gaps = 20/308 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMG--SNVIALDRDPFAVSCGQ 75
           +H+ VLL++ +  L   P    LD TFG GG+SR    K+G    ++  D+DP A++ GQ
Sbjct: 8   NHITVLLDEAVEALAVRPDGCYLDGTFGRGGHSRLILSKLGPQGRLLGFDKDPQAIATGQ 67

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
             +     +F + Q +F++L   V ++G    V GV+ DLGVSS Q+D  +RGFSF   G
Sbjct: 68  -ALAAEDGRFVVVQRSFAELGSEVAERGLAGKVSGVLLDLGVSSPQLDDPERGFSFLNDG 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + GISA+  +  A V+++ R+    GEE+ + R+A A+V+RR+  PF+ T D
Sbjct: 127 PLDMRMDPTRGISAAQFIATAPVEEIARVFKEYGEERFSGRMARAVVERREIQPFERTAD 186

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ ++ K    +     +PATR+FQ LRI VNNE+ +L  GL +A ++L+ GG L+V+SF
Sbjct: 187 LAEVL-KVANPAWEKGKNPATRAFQGLRIHVNNELGDLEAGLEAALESLEVGGRLVVISF 245

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVV------PTQEDVAFNR 304
           HSLEDR+VK F       V      +P N  P  F++   K+ +       ++ ++  N 
Sbjct: 246 HSLEDRIVKLFMRR---LVKGESDNLPRNL-PVRFEAFVPKIKIHGKAQFASEAELKANP 301

Query: 305 RSRSAKLR 312
           R+RSA +R
Sbjct: 302 RARSAVMR 309


>gi|332531941|ref|ZP_08407825.1| S-adenosyl-methyltransferase MraW [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332038568|gb|EGI75011.1| S-adenosyl-methyltransferase MraW [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 285

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 115/288 (39%), Positives = 175/288 (60%), Gaps = 17/288 (5%)

Query: 41  LDATFGAGGYS-RSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD 97
           +D TFG GG+S +   ++G    + A+D+DP A+   ++   D +  F++    FS L +
Sbjct: 1   MDGTFGRGGHSGQILARLGDEGRLQAIDQDPQAIQSAEKFADDPR--FAIAHTRFSNLYE 58

Query: 98  YVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS-CSGISASDVVNQAN 152
                     VDG++ D+GVSS Q+D  +RGFSF K GPLDMRM   +G SA+  + +A 
Sbjct: 59  VAQQNDLIGKVDGILLDIGVSSPQLDDAERGFSFMKDGPLDMRMDPTTGRSAAQWLAEAE 118

Query: 153 VKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATR 212
           + D+T ++  LGEEK   RIAH +++ R+  P  TT+ L+ L+ + V   K+   HPATR
Sbjct: 119 LDDITHVIKKLGEEKFGKRIAHKVLEVREHTPITTTKQLADLVDEAVPV-KDKFKHPATR 177

Query: 213 SFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAV 272
           +FQA+RI++N+E+EE+   L+SA K LK GG L+V+SFHSLEDR+VK+F   +S      
Sbjct: 178 TFQAIRIYINSELEEIQTALQSAVKVLKPGGRLVVISFHSLEDRIVKQFIRKQSKGEALP 237

Query: 273 RHMIPSNAHPAVFQSITKKVV----VPTQEDVAFNRRSRSAKLRAGMR 316
           R +  ++A   + +++T K V     P+  +V  N RSRS+ LR   R
Sbjct: 238 RGLPLTDAQ--INKNLTLKAVGKAIKPSAAEVERNPRSRSSVLRIAQR 283


>gi|303258244|ref|ZP_07344251.1| S-adenosyl-methyltransferase MraW [Burkholderiales bacterium
           1_1_47]
 gi|331001080|ref|ZP_08324711.1| S-adenosyl-methyltransferase MraW [Parasutterella excrementihominis
           YIT 11859]
 gi|302858997|gb|EFL82081.1| S-adenosyl-methyltransferase MraW [Burkholderiales bacterium
           1_1_47]
 gi|329569385|gb|EGG51163.1| S-adenosyl-methyltransferase MraW [Parasutterella excrementihominis
           YIT 11859]
          Length = 322

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 120/309 (38%), Positives = 177/309 (57%), Gaps = 16/309 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H PVL E+   LL   P  V +D TFG GG+SR   +  S    +IA DRD  AV    +
Sbjct: 8   HRPVLAEESPRLLVTDPNGVYVDGTFGRGGHSRLILEKLSPQGRLIAFDRDEEAVKAAAQ 67

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +F +  A F+ +++ +   G+D   G+  D+GVSS QID  +RGFSF+  GPL
Sbjct: 68  IQ---DPRFQIIHAPFASMKEELAKIGIDKVTGIFLDIGVSSPQIDDPERGFSFRFDGPL 124

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  S G +A++ + +A+  ++ ++   LGEE+ A + A AI K R   P   T+ L+
Sbjct: 125 DMRMDTSAGETAAEWIARADAAEMAKVFKDLGEERFAMKAAKAIEKVRTKEPILRTKQLA 184

Query: 193 SLIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            LI  T+  +K +   HPATR FQA+RI VN E+E+L + L SA   L  GG+L V+SFH
Sbjct: 185 DLIAATLPRNKKDSAQHPATRIFQAIRIHVNQELEQLKRALESAGSLLLPGGVLAVISFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVR---HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SLEDR+VKKFF + +     +     ++PS     +F    +  ++P++++   N R+RS
Sbjct: 245 SLEDRIVKKFFEAAANPASCIDPRLPLLPSQLPQPLFNRAVR--ILPSEKECEENPRARS 302

Query: 309 AKLRAGMRT 317
           + LR   RT
Sbjct: 303 SVLRGASRT 311


>gi|212702349|ref|ZP_03310477.1| hypothetical protein DESPIG_00362 [Desulfovibrio piger ATCC 29098]
 gi|212674227|gb|EEB34710.1| hypothetical protein DESPIG_00362 [Desulfovibrio piger ATCC 29098]
          Length = 334

 Score =  193 bits (491), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 123/318 (38%), Positives = 176/318 (55%), Gaps = 20/318 (6%)

Query: 20  HVPVLLEKVIALLNPA-------PGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFA 70
           H+PVL+++ +A L P        P + ILD T G  G+S +  +    + + ALDRD  A
Sbjct: 16  HIPVLMKETLAALQPVLDAGRDRPVR-ILDGTLGMAGHSCAMLQAAPMAELCALDRDEEA 74

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSF 127
           +   +  +  + ++   +   +SQ ++ + D G   VD V+ D+GVSS+Q+D  +RGFSF
Sbjct: 75  LELARRRLEPFGDRVHTYHCRYSQFEEALDDLGWEKVDAVLLDIGVSSLQLDEAERGFSF 134

Query: 128 QKSGPLDMRMS--CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
              GPLDMRM       SA   VN+ N   L   +  LGEE QA RIA AIV  RQ +P 
Sbjct: 135 YGDGPLDMRMDQHSGAPSAWHWVNRENFDRLKECIATLGEEPQAGRIARAIVDARQKSPI 194

Query: 186 QTTQDLSSLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
            TT  L++L++K     +    R HPATR+FQALR+ VN+E+ EL + L +    L  GG
Sbjct: 195 DTTAQLAALVEKAYPPAWRAKARRHPATRTFQALRMAVNDELGELRRFLDAILGRLSLGG 254

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH--PAVFQSITKKVVVPTQEDVA 301
            L V+SFHSLEDR+VK+     +      RH+     H  P V + + KK V    +++A
Sbjct: 255 RLSVISFHSLEDRMVKQTMRYWAEGCRCPRHVPVCVCHHVPEV-EILYKKPVQADDDELA 313

Query: 302 FNRRSRSAKLRAGMRTVE 319
            N R+ SAKLRA  +  E
Sbjct: 314 VNPRASSAKLRAVEKIAE 331


>gi|308380285|ref|ZP_07669154.1| hypothetical protein TMKG_00427 [Mycobacterium tuberculosis
           SUMu011]
 gi|308361967|gb|EFP50818.1| hypothetical protein TMKG_00427 [Mycobacterium tuberculosis
           SUMu011]
          Length = 425

 Score =  193 bits (491), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 118/321 (36%), Positives = 177/321 (55%), Gaps = 20/321 (6%)

Query: 20  HVPVLLEKVIALLNPAPGK--------VILDATFGAGGYSRSFCK--MGSNVIALDRDPF 69
           HVPVL ++   LL PA  +        V+LDAT GAGG++  F +   G  +I LDRDP 
Sbjct: 94  HVPVLAQRCFELLTPALTRYYPDGSQAVLLDATIGAGGHAERFLEGLPGLRLIGLDRDPT 153

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSSMQIDCGDR 123
           A+   +  +  + ++ +L    +  L   + + G      VDG++FDLGVSSMQ+D  +R
Sbjct: 154 ALDVARSRLVRFADRLTLVHTRYDCLGAALAESGYAAVGSVDGILFDLGVSSMQLDRAER 213

Query: 124 GFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GF++    PLDMRM   + ++A+D+VN  +   L  IL   GEE+ A RIA  IV+RR  
Sbjct: 214 GFAYATDAPLDMRMDPTTPLTAADIVNTYDEAALADILRRYGEERFARRIAAGIVRRRAK 273

Query: 183 APFQTTQDLSSLIQKTVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
            PF +T +L +L+ + +  +   R+  HPA R+FQALRI VN+E+E L   + +A  AL 
Sbjct: 274 TPFTSTAELVALLYQAIP-APARRVGGHPAKRTFQALRIAVNDELESLRTAVPAALDALA 332

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300
            GG + V+++ SLEDR+VK+ FA            +    H   F+S+T      +  ++
Sbjct: 333 IGGRIAVLAYQSLEDRIVKRVFAEAVASATPAGLPVELPGHEPRFRSLTHGAERASVAEI 392

Query: 301 AFNRRSRSAKLRAGMRTVERS 321
             N RS   +LRA  R   R+
Sbjct: 393 ERNPRSTPVRLRALQRVEHRA 413


>gi|308233784|ref|ZP_07664521.1| S-adenosyl-methyltransferase MraW [Atopobium vaginae DSM 15829]
 gi|328943767|ref|ZP_08241232.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Atopobium
           vaginae DSM 15829]
 gi|327491736|gb|EGF23510.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Atopobium
           vaginae DSM 15829]
          Length = 319

 Score =  193 bits (491), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 115/310 (37%), Positives = 179/310 (57%), Gaps = 12/310 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           HVPV+L +V   L+  PG V+ D T G  G++ +  +  +     + +D+D  A+    E
Sbjct: 7   HVPVMLTEVEQELSLKPGDVVCDCTLGGAGHTVALAQHVAPDGLSLGIDQDDAALKAASE 66

Query: 77  TMRDYKE--QFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            M        +   +  FSQL + +      GVD  +FDLGVSS Q+D  +RGFS+ +  
Sbjct: 67  RMDRLAPCVTYKFLKGNFSQLDNLLVQAQVIGVDAFLFDLGVSSPQLDVAERGFSYHEDA 126

Query: 132 PLDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
           PLDMRM    + ++A++V+   N  DLTRIL   G+EK A+RIAH IV++R+ +P +TT 
Sbjct: 127 PLDMRMDPRNNTLTAAEVIQTYNEADLTRILRSYGDEKFAARIAHVIVEQRKLSPIRTTL 186

Query: 190 DLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  ++++ +   ++ +  HPA ++FQALRI VN+E++ L  GL+ A + L  GG + ++
Sbjct: 187 ELVEVVKRAIPAAARRHGKHPARKTFQALRIEVNHELDVLETGLKQAIRWLNPGGRICII 246

Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           ++HSLED+LVK   +  + G V      +       V   +TKK +V T  +V  N R+R
Sbjct: 247 AYHSLEDKLVKHILSEYAQGCVCPADFPVCVCGRKPVLDILTKKPLVATPSEVECNPRAR 306

Query: 308 SAKLRAGMRT 317
           SA LRA  RT
Sbjct: 307 SALLRAARRT 316


>gi|237654092|ref|YP_002890406.1| S-adenosyl-methyltransferase MraW [Thauera sp. MZ1T]
 gi|237625339|gb|ACR02029.1| S-adenosyl-methyltransferase MraW [Thauera sp. MZ1T]
          Length = 311

 Score =  193 bits (491), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 124/306 (40%), Positives = 175/306 (57%), Gaps = 12/306 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMG--SNVIALDRDPFAVSCGQE 76
           HV VLL + +  L        +D TFG GG+SR+   ++G    +IA DRDP A++ GQ 
Sbjct: 7   HVSVLLSEAVDALAIRADGFYVDGTFGRGGHSRAVLQRLGPQGRLIAFDRDPLAIAAGQG 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  + +L  + FS L D +   GV   DGV+ DLGVSS Q+D   RG SF+   PL
Sbjct: 67  V---GDARLTLVHSAFSALDDELARLGVQAVDGVLLDLGVSSPQLDDAARGMSFRFDAPL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  S G + ++ + +A+V  +T ++   GEE+ A  IA AI   R      TT  L+
Sbjct: 124 DMRMDTSRGQTVAEWLAEASVGQITEVIREYGEERFAHAIAKAIANARAGGAVATTGQLA 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +L++K V   +  + HPATR+FQALRIF+N E+EEL++ L      L+ GG L V+SFHS
Sbjct: 184 ALVEKAVRTREPGQ-HPATRTFQALRIFINQELEELSRVLPVCVSRLRPGGRLAVISFHS 242

Query: 253 LEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK+F    S   V+  R  + +   PA    +  K + P++ +VA N R+RSA L
Sbjct: 243 LEDRIVKRFMRDESRPPVLPRRLPVRAADLPAPRLQLVGKAMRPSEAEVAANPRARSAVL 302

Query: 312 RAGMRT 317
           R   RT
Sbjct: 303 RVAERT 308


>gi|332638186|ref|ZP_08417049.1| 16S rRNA m(4)C1402 methyltranserfase [Weissella cibaria KACC 11862]
          Length = 314

 Score =  193 bits (491), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 121/305 (39%), Positives = 177/305 (58%), Gaps = 12/305 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQE 76
           +HV VLL + I  LN  P  V +DAT G GG+S+          + + D+D  A++   E
Sbjct: 5   NHVTVLLNEAIDNLNVKPDGVYVDATLGGGGHSQLLASRLTTGKLWSFDQDITAINYNTE 64

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +       + +  Q  F  L+  + + GV   DG+V+DLGVSS Q D G RGFS+    
Sbjct: 65  HLAAELAAGKVAFIQNNFRNLKAALAEVGVTEIDGIVYDLGVSSPQFDDGQRGFSYNYDA 124

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  S  ++A  VVN+ +  DL RIL   GEEK A +IA AI ++R   P +TT +
Sbjct: 125 PLDMRMDQSQELNARTVVNEWDFHDLLRILSRYGEEKFAKQIARAIERQRAIKPIETTFE 184

Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I+  +   ++    HPA RSFQA+RI VN+E+  + + L  A   LK GG + V++
Sbjct: 185 LVEVIKSAIPAAARRTGGHPAKRSFQAIRIAVNDELGVVEESLAQALDMLKVGGRISVIT 244

Query: 250 FHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           FHSLEDRLVK  F  ++   +V A   +IP    P  F+ +++K ++P++E++A N R+ 
Sbjct: 245 FHSLEDRLVKTMFKEKTALPEVPAGLPIIPDEMQPD-FKLVSRKPILPSEEEMAENHRAH 303

Query: 308 SAKLR 312
           SAKLR
Sbjct: 304 SAKLR 308


>gi|226360238|ref|YP_002778016.1| S-adenosyl-methyltransferase MraW [Rhodococcus opacus B4]
 gi|262825479|sp|C1AU63|RSMH_RHOOB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|226238723|dbj|BAH49071.1| methyltransferase MraW [Rhodococcus opacus B4]
          Length = 338

 Score =  193 bits (491), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 116/326 (35%), Positives = 180/326 (55%), Gaps = 30/326 (9%)

Query: 20  HVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPF 69
           H+PVLL +   LL PA         G V++DAT G GG+S  F +    +  +ALDRDP 
Sbjct: 17  HIPVLLHRADELLGPALTANDPHGGGAVMIDATLGLGGHSEHFLRTYPQLRLVALDRDPH 76

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYV------PDKGVDGVVFDLGVSSMQIDCGDR 123
           A+      +  + ++ +     +  ++D +      P + V G++FDLGVSSMQ+D  DR
Sbjct: 77  ALEIAGGRLAPFADRITFVHTRYDGIEDALTQAGLSPRESVHGILFDLGVSSMQLDESDR 136

Query: 124 GFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GF++    PLDMRM   +GI+A++V+N  +  DL RIL   GEE+ A +IA  +V++R  
Sbjct: 137 GFAYSIDAPLDMRMDPTTGITAAEVLNTYSHGDLARILSTYGEERFAGKIASEVVRQRAK 196

Query: 183 APFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            PF T+  L  L+ +T+   ++    HPA R+FQALR+ VN E++ L   + +A  AL  
Sbjct: 197 EPFTTSAALVELLYRTIPAATRRTGGHPAKRTFQALRVEVNGELDSLRAAVPAALDALTV 256

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRS------GKVMAVRHMIPSNAHPAVFQSITKKVVVP 295
           GG ++ +S+ SLEDR+VK+    RS      G  + +  M P       F+ +T+     
Sbjct: 257 GGRVVFMSYQSLEDRVVKQEITPRSKSKSPEGLPVELPGMGPE------FRILTRGAERA 310

Query: 296 TQEDVAFNRRSRSAKLRAGMRTVERS 321
           +++++  N RS   +LRA  R   RS
Sbjct: 311 SEQEIEENPRSAPVRLRAAERIARRS 336


>gi|121638047|ref|YP_978271.1| S-adenosyl-methyltransferase MraW [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|148661981|ref|YP_001283504.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis
           H37Ra]
 gi|148823374|ref|YP_001288128.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis F11]
 gi|224990541|ref|YP_002645228.1| S-adenosyl-methyltransferase [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|253798770|ref|YP_003031771.1| methylase MraW [Mycobacterium tuberculosis KZN 1435]
 gi|254364966|ref|ZP_04981012.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
           Haarlem]
 gi|260205463|ref|ZP_05772954.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis K85]
 gi|289443672|ref|ZP_06433416.1| MraW methylase MraW [Mycobacterium tuberculosis T46]
 gi|289447793|ref|ZP_06437537.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis
           CPHL_A]
 gi|289554048|ref|ZP_06443258.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
 gi|289570281|ref|ZP_06450508.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289574851|ref|ZP_06455078.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis K85]
 gi|289745439|ref|ZP_06504817.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis
           02_1987]
 gi|289750761|ref|ZP_06510139.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289754275|ref|ZP_06513653.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis
           EAS054]
 gi|289758287|ref|ZP_06517665.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis T85]
 gi|289762326|ref|ZP_06521704.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
 gi|297731746|ref|ZP_06960864.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis KZN
           R506]
 gi|298525659|ref|ZP_07013068.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis
           94_M4241A]
 gi|306793634|ref|ZP_07431936.1| hypothetical protein TMEG_02533 [Mycobacterium tuberculosis
           SUMu005]
 gi|308375796|ref|ZP_07668118.1| hypothetical protein TMGG_00723 [Mycobacterium tuberculosis
           SUMu007]
 gi|308376929|ref|ZP_07668385.1| hypothetical protein TMHG_01355 [Mycobacterium tuberculosis
           SUMu008]
 gi|308377928|ref|ZP_07668626.1| hypothetical protein TMIG_00833 [Mycobacterium tuberculosis
           SUMu009]
 gi|308379135|ref|ZP_07668903.1| hypothetical protein TMJG_00427 [Mycobacterium tuberculosis
           SUMu010]
 gi|2104313|emb|CAB08662.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv]
 gi|31618937|emb|CAD97042.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
 gi|121493695|emb|CAL72170.1| Conserved hypothetical protein [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|134150480|gb|EBA42525.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148506133|gb|ABQ73942.1| S-adenosyl-methyltransferase [Mycobacterium tuberculosis H37Ra]
 gi|148721901|gb|ABR06526.1| conserved hypothetical protein [Mycobacterium tuberculosis F11]
 gi|224773654|dbj|BAH26460.1| S-adenosyl-methyltransferase [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|253320273|gb|ACT24876.1| methylase MraW [Mycobacterium tuberculosis KZN 1435]
 gi|289416591|gb|EFD13831.1| MraW methylase MraW [Mycobacterium tuberculosis T46]
 gi|289420751|gb|EFD17952.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis
           CPHL_A]
 gi|289438680|gb|EFD21173.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
 gi|289539282|gb|EFD43860.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis K85]
 gi|289544035|gb|EFD47683.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289685967|gb|EFD53455.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis
           02_1987]
 gi|289691348|gb|EFD58777.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289694862|gb|EFD62291.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis
           EAS054]
 gi|289709832|gb|EFD73848.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
 gi|289713851|gb|EFD77863.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis T85]
 gi|298495453|gb|EFI30747.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis
           94_M4241A]
 gi|308337978|gb|EFP26829.1| hypothetical protein TMEG_02533 [Mycobacterium tuberculosis
           SUMu005]
 gi|308345155|gb|EFP34006.1| hypothetical protein TMGG_00723 [Mycobacterium tuberculosis
           SUMu007]
 gi|308349457|gb|EFP38308.1| hypothetical protein TMHG_01355 [Mycobacterium tuberculosis
           SUMu008]
 gi|308354088|gb|EFP42939.1| hypothetical protein TMIG_00833 [Mycobacterium tuberculosis
           SUMu009]
 gi|308358031|gb|EFP46882.1| hypothetical protein TMJG_00427 [Mycobacterium tuberculosis
           SUMu010]
 gi|326903782|gb|EGE50715.1| hypothetical protein TBPG_01665 [Mycobacterium tuberculosis W-148]
 gi|328458533|gb|AEB03956.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
           4207]
          Length = 396

 Score =  193 bits (491), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 118/321 (36%), Positives = 177/321 (55%), Gaps = 20/321 (6%)

Query: 20  HVPVLLEKVIALLNPAPGK--------VILDATFGAGGYSRSFCK--MGSNVIALDRDPF 69
           HVPVL ++   LL PA  +        V+LDAT GAGG++  F +   G  +I LDRDP 
Sbjct: 65  HVPVLAQRCFELLTPALTRYYPDGSQAVLLDATIGAGGHAERFLEGLPGLRLIGLDRDPT 124

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSSMQIDCGDR 123
           A+   +  +  + ++ +L    +  L   + + G      VDG++FDLGVSSMQ+D  +R
Sbjct: 125 ALDVARSRLVRFADRLTLVHTRYDCLGAALAESGYAAVGSVDGILFDLGVSSMQLDRAER 184

Query: 124 GFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GF++    PLDMRM   + ++A+D+VN  +   L  IL   GEE+ A RIA  IV+RR  
Sbjct: 185 GFAYATDAPLDMRMDPTTPLTAADIVNTYDEAALADILRRYGEERFARRIAAGIVRRRAK 244

Query: 183 APFQTTQDLSSLIQKTVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
            PF +T +L +L+ + +  +   R+  HPA R+FQALRI VN+E+E L   + +A  AL 
Sbjct: 245 TPFTSTAELVALLYQAIP-APARRVGGHPAKRTFQALRIAVNDELESLRTAVPAALDALA 303

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300
            GG + V+++ SLEDR+VK+ FA            +    H   F+S+T      +  ++
Sbjct: 304 IGGRIAVLAYQSLEDRIVKRVFAEAVASATPAGLPVELPGHEPRFRSLTHGAERASVAEI 363

Query: 301 AFNRRSRSAKLRAGMRTVERS 321
             N RS   +LRA  R   R+
Sbjct: 364 ERNPRSTPVRLRALQRVEHRA 384


>gi|154685933|ref|YP_001421094.1| S-adenosyl-methyltransferase MraW [Bacillus amyloliquefaciens
           FZB42]
 gi|263446791|sp|A7Z4D7|RSMH_BACA2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|154351784|gb|ABS73863.1| YlxA [Bacillus amyloliquefaciens FZB42]
          Length = 311

 Score =  193 bits (491), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 116/303 (38%), Positives = 177/303 (58%), Gaps = 11/303 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H  VLL + +  LN  P    +D T G  G+S    +  S    +IA D+D  A+   ++
Sbjct: 4   HKTVLLRETVDGLNIKPDGTYVDCTLGGAGHSTYLLQQLSEKGRLIAFDQDDTALENAKK 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           T+ +YK Q  L ++ F  L++ + + G   VDG++FDLGVSS Q+D  +RGFS+    PL
Sbjct: 64  TLSEYKGQLILVKSNFRYLKECLHEHGITSVDGILFDLGVSSPQLDTPERGFSYHHDAPL 123

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  S  ++A +VVN+   +DL RI    GEEK + +IA  I + R+ +P QTT  L 
Sbjct: 124 DMRMDQSAALTAKEVVNEWRYEDLVRIFFKYGEEKFSKQIARKIEEAREKSPIQTTGQLV 183

Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            LI+  +   ++ +  HPA R FQA+RI VN+E++   + L  A + LK GG + V++FH
Sbjct: 184 DLIKDAIPAPARRSGGHPAKRVFQAIRIAVNDELQVFEEALLQAIEVLKPGGRVSVITFH 243

Query: 252 SLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+ K  F  +S   ++     +IP    P + + IT+K +  ++E++  N R+RSA
Sbjct: 244 SLEDRMCKMTFKEKSSLPELPPGLPVIPEEFEPEL-KLITRKPITASKEELEENNRARSA 302

Query: 310 KLR 312
           KLR
Sbjct: 303 KLR 305


>gi|308232054|ref|ZP_07663988.1| hypothetical protein TMAG_00354 [Mycobacterium tuberculosis
           SUMu001]
 gi|308370931|ref|ZP_07667052.1| hypothetical protein TMCG_00261 [Mycobacterium tuberculosis
           SUMu003]
 gi|308372156|ref|ZP_07667311.1| hypothetical protein TMDG_00643 [Mycobacterium tuberculosis
           SUMu004]
 gi|308215154|gb|EFO74553.1| hypothetical protein TMAG_00354 [Mycobacterium tuberculosis
           SUMu001]
 gi|308330345|gb|EFP19196.1| hypothetical protein TMCG_00261 [Mycobacterium tuberculosis
           SUMu003]
 gi|308334178|gb|EFP23029.1| hypothetical protein TMDG_00643 [Mycobacterium tuberculosis
           SUMu004]
          Length = 405

 Score =  193 bits (491), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 118/321 (36%), Positives = 177/321 (55%), Gaps = 20/321 (6%)

Query: 20  HVPVLLEKVIALLNPAPGK--------VILDATFGAGGYSRSFCK--MGSNVIALDRDPF 69
           HVPVL ++   LL PA  +        V+LDAT GAGG++  F +   G  +I LDRDP 
Sbjct: 74  HVPVLAQRCFELLTPALTRYYPDGSQAVLLDATIGAGGHAERFLEGLPGLRLIGLDRDPT 133

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSSMQIDCGDR 123
           A+   +  +  + ++ +L    +  L   + + G      VDG++FDLGVSSMQ+D  +R
Sbjct: 134 ALDVARSRLVRFADRLTLVHTRYDCLGAALAESGYAAVGSVDGILFDLGVSSMQLDRAER 193

Query: 124 GFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GF++    PLDMRM   + ++A+D+VN  +   L  IL   GEE+ A RIA  IV+RR  
Sbjct: 194 GFAYATDAPLDMRMDPTTPLTAADIVNTYDEAALADILRRYGEERFARRIAAGIVRRRAK 253

Query: 183 APFQTTQDLSSLIQKTVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
            PF +T +L +L+ + +  +   R+  HPA R+FQALRI VN+E+E L   + +A  AL 
Sbjct: 254 TPFTSTAELVALLYQAIP-APARRVGGHPAKRTFQALRIAVNDELESLRTAVPAALDALA 312

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300
            GG + V+++ SLEDR+VK+ FA            +    H   F+S+T      +  ++
Sbjct: 313 IGGRIAVLAYQSLEDRIVKRVFAEAVASATPAGLPVELPGHEPRFRSLTHGAERASVAEI 372

Query: 301 AFNRRSRSAKLRAGMRTVERS 321
             N RS   +LRA  R   R+
Sbjct: 373 ERNPRSTPVRLRALQRVEHRA 393


>gi|284991692|ref|YP_003410246.1| S-adenosyl-methyltransferase MraW [Geodermatophilus obscurus DSM
           43160]
 gi|284064937|gb|ADB75875.1| S-adenosyl-methyltransferase MraW [Geodermatophilus obscurus DSM
           43160]
          Length = 330

 Score =  193 bits (490), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 118/301 (39%), Positives = 174/301 (57%), Gaps = 12/301 (3%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74
           HVPVLL++V  LL PA    G V++DAT G  G+S +  +   G  ++ LDRDP A +  
Sbjct: 17  HVPVLLDRVTELLAPACAADGAVLVDATLGLAGHSLALLRAHPGLRLVGLDRDPDARAEA 76

Query: 75  QETMRD--YKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK 129
              + D    ++ ++  A F +L   +   G   V  V+FDLGVSS+Q+D  DRGFS+  
Sbjct: 77  TRRLTDAGVADRATVVPAVFDELPGVLDRLGLTEVQAVLFDLGVSSLQLDRPDRGFSYAA 136

Query: 130 SGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM  S   +A+DVVN      L R+L + GEE+ A+RIA AI + R+ APF  T
Sbjct: 137 DAPLDMRMDPSAPRTAADVVNTYPTDRLARVLRVYGEERFATRIAQAITRERERAPFTHT 196

Query: 189 QDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           + L+ L++ ++   ++    HPA R+FQALRI VN+E+  L + L +A  AL  GG + V
Sbjct: 197 ERLAHLVRASIPAATRRTGGHPAKRTFQALRIEVNDELGVLERALPAALDALTVGGRIAV 256

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           ++FHSLEDR+VK+  A+ +         +P        + +T+    P++ +VA N RS 
Sbjct: 257 ITFHSLEDRIVKQTLAAGAVDRTPPGLPVPLPEMGPTLRLLTRGGEAPSEAEVAANPRSA 316

Query: 308 S 308
           S
Sbjct: 317 S 317


>gi|91786965|ref|YP_547917.1| S-adenosyl-methyltransferase MraW [Polaromonas sp. JS666]
 gi|123060224|sp|Q12EM3|RSMH_POLSJ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|91696190|gb|ABE43019.1| methyltransferase [Polaromonas sp. JS666]
          Length = 305

 Score =  193 bits (490), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 124/303 (40%), Positives = 178/303 (58%), Gaps = 13/303 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H  VLL + IA L+  P    +DATFG GG+SR      S    + A D+D  A++  Q 
Sbjct: 7   HRTVLLNEAIAALHINPDGHYIDATFGRGGHSRLLLSQLSPQGRLTAFDKDLDAIAEAQ- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
           T+ D +  FS+    F  L   +P     GV+ DLGVSS QID   RGFSF+  GPLDMR
Sbjct: 66  TITDPR--FSIRHEGFMHL-GQLPAASAAGVLMDLGVSSPQIDNPVRGFSFRSEGPLDMR 122

Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQTTQDLSSL 194
           M  + G S ++ +  A+++ +  ++   GEE+ A ++A AI +RRQ   P +TT +L+ +
Sbjct: 123 MDTTRGQSVAEWLADASIETMAEVIREYGEERFAQQVAKAIDRRRQERGPLRTTAELAEV 182

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           +   V   +  +  PATR+FQALRIF+N E+EEL Q L ++ K L+ GG L+V+SFHSLE
Sbjct: 183 VAGAVKTREPGK-DPATRTFQALRIFINAELEELQQALEASLKVLQPGGRLVVISFHSLE 241

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           DR+VK+F A +S +V   R      A P   +      + P++E++A N RSRSA +R  
Sbjct: 242 DRIVKQFIAGQSREVFDRRAPF---AAPKAMRLKALGRIKPSEEEIAANPRSRSAVMRVA 298

Query: 315 MRT 317
            RT
Sbjct: 299 ERT 301


>gi|15841657|ref|NP_336694.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis
           CDC1551]
 gi|161352465|ref|NP_216681.2| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis
           H37Rv]
 gi|161511532|ref|NP_855838.2| S-adenosyl-methyltransferase MraW [Mycobacterium bovis AF2122/97]
 gi|215403555|ref|ZP_03415736.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis
           02_1987]
 gi|215431098|ref|ZP_03429017.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis
           EAS054]
 gi|218753888|ref|ZP_03532684.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis GM
           1503]
 gi|219558145|ref|ZP_03537221.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis T17]
 gi|254551204|ref|ZP_05141651.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|260187163|ref|ZP_05764637.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis
           CPHL_A]
 gi|260201284|ref|ZP_05768775.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis T46]
 gi|294993552|ref|ZP_06799243.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis 210]
 gi|297634755|ref|ZP_06952535.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis KZN
           4207]
 gi|307084822|ref|ZP_07493935.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis
           SUMu012]
 gi|308369641|ref|ZP_07666771.1| hypothetical protein TMBG_00713 [Mycobacterium tuberculosis
           SUMu002]
 gi|313659080|ref|ZP_07815960.1| 16S rRNA m(4)C1402 methyltranserfase [Mycobacterium tuberculosis
           KZN V2475]
 gi|54037824|sp|P65430|RSMH_MYCBO RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|54041487|sp|P65429|RSMH_MYCTU RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262831560|sp|A5U4J2|RSMH_MYCTA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263460389|sp|A1KKK8|RSMH_MYCBP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263460410|sp|C1AQ81|RSMH_MYCBT RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|13881910|gb|AAK46508.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551]
 gi|308326909|gb|EFP15760.1| hypothetical protein TMBG_00713 [Mycobacterium tuberculosis
           SUMu002]
 gi|308365608|gb|EFP54459.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis
           SUMu012]
          Length = 344

 Score =  193 bits (490), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 118/321 (36%), Positives = 177/321 (55%), Gaps = 20/321 (6%)

Query: 20  HVPVLLEKVIALLNPAPGK--------VILDATFGAGGYSRSFCK--MGSNVIALDRDPF 69
           HVPVL ++   LL PA  +        V+LDAT GAGG++  F +   G  +I LDRDP 
Sbjct: 13  HVPVLAQRCFELLTPALTRYYPDGSQAVLLDATIGAGGHAERFLEGLPGLRLIGLDRDPT 72

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSSMQIDCGDR 123
           A+   +  +  + ++ +L    +  L   + + G      VDG++FDLGVSSMQ+D  +R
Sbjct: 73  ALDVARSRLVRFADRLTLVHTRYDCLGAALAESGYAAVGSVDGILFDLGVSSMQLDRAER 132

Query: 124 GFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GF++    PLDMRM   + ++A+D+VN  +   L  IL   GEE+ A RIA  IV+RR  
Sbjct: 133 GFAYATDAPLDMRMDPTTPLTAADIVNTYDEAALADILRRYGEERFARRIAAGIVRRRAK 192

Query: 183 APFQTTQDLSSLIQKTVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
            PF +T +L +L+ + +  +   R+  HPA R+FQALRI VN+E+E L   + +A  AL 
Sbjct: 193 TPFTSTAELVALLYQAIP-APARRVGGHPAKRTFQALRIAVNDELESLRTAVPAALDALA 251

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300
            GG + V+++ SLEDR+VK+ FA            +    H   F+S+T      +  ++
Sbjct: 252 IGGRIAVLAYQSLEDRIVKRVFAEAVASATPAGLPVELPGHEPRFRSLTHGAERASVAEI 311

Query: 301 AFNRRSRSAKLRAGMRTVERS 321
             N RS   +LRA  R   R+
Sbjct: 312 ERNPRSTPVRLRALQRVEHRA 332


>gi|312959049|ref|ZP_07773568.1| S-adenosyl-L-methionine-dependent methyltransferase [Pseudomonas
           fluorescens WH6]
 gi|311286819|gb|EFQ65381.1| S-adenosyl-L-methionine-dependent methyltransferase [Pseudomonas
           fluorescens WH6]
          Length = 315

 Score =  193 bits (490), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 120/308 (38%), Positives = 179/308 (58%), Gaps = 20/308 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQ 75
           +H+ VLL++ +  L        LD TFG GG+SR   S    G  ++  D+DP A++ GQ
Sbjct: 8   NHITVLLDEAVEALAVRADGCYLDGTFGRGGHSRLILSQLGPGGKLLGFDKDPQAIATGQ 67

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
             +     +F + Q +F++L   V ++G    V GV+ DLGVSS Q+D  +RGFSF   G
Sbjct: 68  -ALAAEDGRFVVVQRSFAELGAEVAERGMAGKVAGVLLDLGVSSPQLDDPERGFSFMNDG 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + G+SA+  +  A V+++ R+    GEE+ A R+A A+V+RR+  PF+ T D
Sbjct: 127 PLDMRMDPTRGVSAAQFIATAPVEEIARVFKEYGEERFAGRMARAVVERRELQPFERTAD 186

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ ++ K    +     +PATR+FQ LRI VNNE+ +L  GL +A  AL+ GG L+V+SF
Sbjct: 187 LAEVL-KVANPAWEKGKNPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLVVISF 245

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVV------PTQEDVAFNR 304
           HSLEDR+VK F       V      +P N  P  F++   K+ +       ++ ++  N 
Sbjct: 246 HSLEDRIVKLFMRR---LVKGESDNLPRNL-PVRFEAFVPKIKIHGKAQFASEAELKANP 301

Query: 305 RSRSAKLR 312
           RSRSA +R
Sbjct: 302 RSRSAVMR 309


>gi|32490963|ref|NP_871217.1| hypothetical protein WGLp214 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|30173030|sp|Q8D2Y8|RSMH_WIGBR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|25166169|dbj|BAC24360.1| yabC [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 309

 Score =  193 bits (490), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 118/308 (38%), Positives = 181/308 (58%), Gaps = 23/308 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAV--SCG 74
           H+PV+L +VI  +   P    +DATFG GG+SR   S       +I +DRDP ++  +C 
Sbjct: 2   HIPVMLNEVIKSIKIIPNGTYIDATFGCGGHSRCILSKLNEKGKLIVIDRDPKSIEFAC- 60

Query: 75  QETMRDYKEQFSLFQATFSQLQDY-VPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
             +++D   +       FS++  Y +  K    V G++FDLG+S  QI   +RGFSF   
Sbjct: 61  --SIKD--RRLIPIHGNFSKILKYSIKYKIFGKVQGILFDLGLSFSQIKDSNRGFSFMHD 116

Query: 131 GPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
           GPLDMRM+   GISA + +N AN+KD++ ++   GEEK   +I++ I K R+     TT+
Sbjct: 117 GPLDMRMNNLHGISAKEWINNANIKDISFVIKEFGEEKFYKKISNVICKYRKIKNINTTK 176

Query: 190 DLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L +LI K   YF K  + HPA RSFQA+RI++NNE++EL   L    K +   G ++ +
Sbjct: 177 ELVNLINKACGYFYK--KKHPARRSFQAIRIYINNELQELKLALNDIIKIISPKGRIVFI 234

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK----KVVVPTQEDVAFNR 304
           SFHSLEDR++KKF  + S K +   + +P         +I K    K + P+++++ +N+
Sbjct: 235 SFHSLEDRIIKKFIINNSRKKI-YPYKLPILESKIKNDNIYKLKYFKKIQPSKKEILYNK 293

Query: 305 RSRSAKLR 312
           +SRSA LR
Sbjct: 294 KSRSAILR 301


>gi|71909118|ref|YP_286705.1| methyltransferase [Dechloromonas aromatica RCB]
 gi|88909196|sp|Q47A96|RSMH_DECAR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|71848739|gb|AAZ48235.1| methyltransferase [Dechloromonas aromatica RCB]
          Length = 308

 Score =  193 bits (490), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 118/301 (39%), Positives = 175/301 (58%), Gaps = 12/301 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76
           HV VLLE+ +  L      V +DATFG GG+SR   S       ++A+DRDP A++ G E
Sbjct: 7   HVTVLLEEAVGALAIKADGVYVDATFGRGGHSRRILSELNQNGRLVAVDRDPQAIAAGAE 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +F L    F +L +   + G   VDGV+FD+GVSS QID G+RGFSF+   PL
Sbjct: 67  I---DDSRFLLVHRAFGELAEAADEAGIRDVDGVLFDVGVSSPQIDDGERGFSFRYDAPL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  + G +A++ + +A ++D+T ++   GEE+ A +IA  +V  R   P  TT   +
Sbjct: 124 DMRMDTTQGETAAEWLARAEIRDITEVIRNYGEERFAFQIAKKVVAARLEQPIVTTGQFA 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +L+++TV   +  +  PATRSFQALRI +N E+ +L   L  A + LK GG L+V+SFHS
Sbjct: 184 ALVRETVRTREPGQ-DPATRSFQALRIHINQELRQLEVALPQALELLKPGGRLVVISFHS 242

Query: 253 LEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK F   +S    M     + ++  P     +  + + P+  ++  N R+RSA +
Sbjct: 243 LEDRIVKNFMRDQSIADAMPKSLPLRADQLPKPKLRLVGRPIKPSAAEIDANPRARSAVM 302

Query: 312 R 312
           R
Sbjct: 303 R 303


>gi|330501916|ref|YP_004378785.1| S-adenosyl-methyltransferase MraW [Pseudomonas mendocina NK-01]
 gi|328916202|gb|AEB57033.1| S-adenosyl-methyltransferase MraW [Pseudomonas mendocina NK-01]
          Length = 315

 Score =  193 bits (490), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 116/306 (37%), Positives = 180/306 (58%), Gaps = 18/306 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H+ VLL++ +  L        +D TFG GG+SR   +    G  ++  D+DP A++ G E
Sbjct: 9   HITVLLDEAVEGLAVRADGCYMDGTFGRGGHSRLILQKLGPGGRLLGFDKDPLAIATG-E 67

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            +     +F + Q +F++L D    +G    V G++ DLGVSS Q+D  +RGFSF   GP
Sbjct: 68  ALAAEDGRFVVVQRSFAELGDEAVVRGISGQVSGILLDLGVSSPQLDDPERGFSFLNDGP 127

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+  +G+SA+D +  A+  ++ R++   GEE+ A R+A A+V+RR   PF  T DL
Sbjct: 128 LDMRMNPHAGVSAADWIATADEDEIARVMKDYGEERFAKRMARAVVQRRAERPFTRTADL 187

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++ +     +  + +PATR+FQ +RI VNNE+ +L +GL +A + L+ GG L+V+SFH
Sbjct: 188 AKVLTEANPAWEKGK-NPATRAFQGIRIHVNNELGDLERGLEAALETLEVGGRLVVISFH 246

Query: 252 SLEDRLVKKFFASRSGKVMAVR-----HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           SLEDR+VK+F   R  K  A +      +IP    P +   +  K V   + ++  N RS
Sbjct: 247 SLEDRIVKQFM-KRQAKGEADKLPRDLPIIPKAFEPRL--KLIGKPVYAAEAELKANPRS 303

Query: 307 RSAKLR 312
           RSA +R
Sbjct: 304 RSAVMR 309


>gi|228992654|ref|ZP_04152580.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           pseudomycoides DSM 12442]
 gi|228766986|gb|EEM15623.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           pseudomycoides DSM 12442]
          Length = 317

 Score =  193 bits (490), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 116/307 (37%), Positives = 177/307 (57%), Gaps = 11/307 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72
           T+  HV VLL++ +  L+  PG   +D T G GG+S         G  +IA D+D  A+ 
Sbjct: 7   TMFKHVTVLLKETVDGLDIKPGGTYVDCTLGGGGHSSYLLSQLTEGGKLIAFDQDEIAIQ 66

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK 129
             +E    Y +QF   ++ F  L + + + G   VDG++FDLGVSS Q+D  +RGFS+  
Sbjct: 67  NAKERFSSYGDQFITVKSNFRYLSEKLHELGITEVDGILFDLGVSSPQLDTPERGFSYHH 126

Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM     ++A DVVN  + + L RI    GEEK + +IA  I   R++   +TT
Sbjct: 127 DAPLDMRMDQDAPLTAYDVVNNWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETT 186

Query: 189 QDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L  LI++ +   ++    HPA R FQA+RI VN+E++   + L SA + +K GG + V
Sbjct: 187 GELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRISV 246

Query: 248 VSFHSLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           ++FHSLEDR+ K  F   S + ++     +IP    P + + IT+K ++P+ E++  N R
Sbjct: 247 ITFHSLEDRICKTTFKRNSTTPQLPPGLPIIPDEFKPKL-KLITRKPILPSDEELEENNR 305

Query: 306 SRSAKLR 312
           +RSAKLR
Sbjct: 306 ARSAKLR 312


>gi|317009278|gb|ADU79858.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori India7]
          Length = 308

 Score =  193 bits (490), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 122/306 (39%), Positives = 182/306 (59%), Gaps = 20/306 (6%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVSCGQ 75
           G H  VLL++V+    P    V++D T G GG+S++    K    +I +D+D FA    +
Sbjct: 6   GLHQSVLLQEVLQAFTPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFAQEIAK 65

Query: 76  ETMRDYKEQFSLFQATFSQ-----LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           E ++ ++ +++L    F++     L+ +  +K + GV+ DLGVSS+Q+D  +RGF+F  S
Sbjct: 66  ERLKAFEGRYNLLSGGFAKRFKESLETH--NKEIKGVLVDLGVSSLQLDDDNRGFNFH-S 122

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM   S ++A  V+N  +V  L +I    GE K+  +IAH I +RR   PF+  +
Sbjct: 123 HTLDMRMDLESDLNAQKVINSYSVVALEKIFRDYGEIKEYKKIAHKIAERRAKKPFKDAK 182

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           DLS  +     FSKN +IHPAT  FQA+RI VN+E+EEL + L+ A + LK G +L V+S
Sbjct: 183 DLSDFLSS---FSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCA-RNLK-GAILCVIS 237

Query: 250 FHSLEDRLVKKFFASRSGKVMA---VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           FHSLED+LVK  F   +              SN H A+ + +TKK + P+ E++  NRRS
Sbjct: 238 FHSLEDKLVKNAFKDYAKNCTCDPLSFKCACSNNH-ALGEILTKKPITPSPEEIKNNRRS 296

Query: 307 RSAKLR 312
           RSAK+R
Sbjct: 297 RSAKMR 302


>gi|321460668|gb|EFX71708.1| hypothetical protein DAPPUDRAFT_111399 [Daphnia pulex]
          Length = 322

 Score =  193 bits (490), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 120/318 (37%), Positives = 178/318 (55%), Gaps = 27/318 (8%)

Query: 26  EKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCG-QETMRDYK 82
           ++V+ +  P   +  LD TFGAGG++R       N  V  LDRDP A     Q       
Sbjct: 3   KEVLEMFQPQQNQKFLDLTFGAGGHTRKLLSSARNITVYTLDRDPLAYELAIQLASETTN 62

Query: 83  EQFSLFQATFSQLQDYVPDKGV----DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138
            Q       FS L   + +       DG++ D G SSMQ D  +RGFS  K+GPLDMRM 
Sbjct: 63  GQVVPLLGKFSDLPQLLSNPETCNFFDGILVDCGCSSMQFDTRERGFSLSKNGPLDMRMD 122

Query: 139 CSGI----SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQTTQDLSS 193
            + +    SA D++   +   L+R+L + GEEKQA +IA AI++ R      QTT +L+ 
Sbjct: 123 QNRLENQPSAKDILANIDEDSLSRVLKVYGEEKQAKKIARAIIEARYLFKSLQTTHELAQ 182

Query: 194 LIQKTVYFS-KNNRI----HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           LI+ T   S + +++    H AT++FQALRI VN+E+ EL   +R A + LK GG L+ +
Sbjct: 183 LIESTCGLSTRTDKLQRPSHVATKTFQALRILVNDELNELEFAVRYAHRTLKIGGKLVTI 242

Query: 249 SFHSLEDRLVKKF-----FASRSGKVMA-----VRHMIPSNAHPAVFQSITKKVVVPTQE 298
           +FHSLEDR+VK+      ++++S ++       +  ++P       ++SI K V+VP+ E
Sbjct: 243 TFHSLEDRIVKEHLHGFDYSAKSEEIYKNYGRQLDPLLPLADMERKWESINKHVLVPSDE 302

Query: 299 DVAFNRRSRSAKLRAGMR 316
           +V  N RSRSAKLRA ++
Sbjct: 303 EVNGNPRSRSAKLRAAIK 320


>gi|317010927|gb|ADU84674.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori
           SouthAfrica7]
          Length = 308

 Score =  193 bits (490), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 118/301 (39%), Positives = 181/301 (60%), Gaps = 14/301 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVSCGQET 77
           H  VLL++V+ +  P    V++D T G GG+S++    K    +I +D+D  A    +E 
Sbjct: 8   HQSVLLQEVLQVFAPLEKGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKHAQEIAKER 67

Query: 78  MRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++ ++E++ +    F++  ++ +   G  + GV+ DLGVSS+Q+D  DRGF+F  S  LD
Sbjct: 68  LKTFEERYHILSGGFAKRFKEALETHGEQIKGVLVDLGVSSLQLDDDDRGFNFH-SPTLD 126

Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM   S ++A  V+N  +V  L +I    GE K+  +IAH IV+RR   PF+  +DLS 
Sbjct: 127 MRMDLESELNAQKVINSYSVVALEKIFKDYGEIKEYKKIAHHIVERRAKKPFKDAKDLSD 186

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
            +      SKN +IHPAT  FQA+RI VN+E+EEL + L+ A + LK G +L V+SFHSL
Sbjct: 187 FLSS---LSKNKKIHPATLVFQAIRIEVNHELEELKEFLQDA-RNLK-GAILCVISFHSL 241

Query: 254 EDRLVKKFFASRSGKVM--AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           ED LVK  F   +   +  A+      + + A+ + +TKK + P+ E++  NRRSRSAK+
Sbjct: 242 EDALVKNAFKDYAKNCICDALSFKCTCSNNHALGEILTKKPITPSPEEIKRNRRSRSAKM 301

Query: 312 R 312
           R
Sbjct: 302 R 302


>gi|150390647|ref|YP_001320696.1| S-adenosyl-methyltransferase MraW [Alkaliphilus metalliredigens
           QYMF]
 gi|263433264|sp|A6TS69|RSMH1_ALKMQ RecName: Full=Ribosomal RNA small subunit methyltransferase H 1;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase 1;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH 1
 gi|149950509|gb|ABR49037.1| S-adenosyl-methyltransferase MraW [Alkaliphilus metalliredigens
           QYMF]
          Length = 311

 Score =  192 bits (489), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 113/308 (36%), Positives = 178/308 (57%), Gaps = 9/308 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQ 75
           +H  VLL++ I  L+     + +D T G  G+S+   K +G    +I +D+D  A+S   
Sbjct: 4   EHTSVLLKECIEALDIKENGIYVDGTLGGAGHSQEILKVLGKEGLLIGIDQDENALSAAG 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E + ++  +  L    F  L   + +     +DGV+ DLGVSS Q+D  +RGFS+ +  P
Sbjct: 64  ERLEEHGTKVKLVHDNFHNLDKILENLEITTIDGVLLDLGVSSHQLDERERGFSYMQDAP 123

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM   SG SA D+VN  + K+L RI+   GE++ A RIA  IV+ R+ AP +TT  +
Sbjct: 124 LDMRMDRRSGFSARDIVNDYSEKELERIIKEYGEDRWARRIAQFIVQERELAPIETTHQM 183

Query: 192 SSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+K V   ++ +  HPA R+FQA+RI VN E+E +   + +A K +K GG + ++SF
Sbjct: 184 VEVIKKAVPKGARKDGPHPAKRTFQAIRIEVNQELEIIEATIEAAAKHMKPGGRIAIISF 243

Query: 251 HSLEDRLVKKFFAS-RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  F   ++  V   +  +       + + +T+K ++P++ ++  N RSRSA
Sbjct: 244 HSLEDRIVKNVFRRLQNPCVCPPQFPVCKCEKEQMVKIVTRKPILPSEAELEVNPRSRSA 303

Query: 310 KLRAGMRT 317
           KLR   R 
Sbjct: 304 KLRVAERV 311


>gi|261838057|gb|ACX97823.1| hypothetical protein KHP_0616 [Helicobacter pylori 51]
          Length = 308

 Score =  192 bits (489), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 122/304 (40%), Positives = 181/304 (59%), Gaps = 20/304 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVSCGQET 77
           H  VLL++V+    P    V++D T G GG+S++    K    +I +D+D FA    +E 
Sbjct: 8   HQSVLLQEVLQAFAPLEEGVLIDCTLGLGGHSKAILSQKPHLKLIGIDKDKFAQEIAKER 67

Query: 78  MRDYKEQFSLFQATFSQ-----LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           ++ ++ +++L    F++     L+ +  +K + GV+ DLGVSS+Q+D  +RGF+F  S  
Sbjct: 68  LKAFEGRYNLLSGGFAKRFKEALETH--NKEIKGVLVDLGVSSLQLDDDNRGFNFH-SHA 124

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM   SG++A  V+N  +V  L +I    GE K+  +IAH I +RR   PF+  +DL
Sbjct: 125 LDMRMDLESGLNAQKVINSYSVVALEKIFRDYGEIKEYKKIAHKITERRAKKPFKDAKDL 184

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           S  +     FSKN +IHPAT  FQA+RI VN E+EEL + L+ A + LK G +L V+SFH
Sbjct: 185 SDFLSS---FSKNKKIHPATLVFQAVRIEVNRELEELKEFLQCA-RNLK-GAILCVISFH 239

Query: 252 SLEDRLVKKFFASRSGKVMA---VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SLED LVK  F   +   +          SN H A+ + +TKK + P+ E++  NRRSRS
Sbjct: 240 SLEDALVKNAFKDYAKNCICNPLSFKCTCSNNH-ALGEILTKKPITPSPEEIKNNRRSRS 298

Query: 309 AKLR 312
           AK+R
Sbjct: 299 AKMR 302


>gi|315633809|ref|ZP_07889098.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Aggregatibacter segnis ATCC 33393]
 gi|315477059|gb|EFU67802.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Aggregatibacter segnis ATCC 33393]
          Length = 322

 Score =  192 bits (489), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 133/322 (41%), Positives = 182/322 (56%), Gaps = 34/322 (10%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCG 74
            +H  VLL + +  L      + +D TFG GG+SR    K+ +N  +IA+DRDP AV   
Sbjct: 10  AEHATVLLHETVDGLALKENGIYIDGTFGRGGHSRLILSKLSANGRLIAIDRDPKAVVEA 69

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVP--DK-----GVDGVVFDLGVSSMQIDCGDRGFSF 127
           Q      K Q S F    S   D +P  +K      +DG++ DLGVSS Q+D  +RGFSF
Sbjct: 70  Q------KIQDSRFHIEHSAFSDILPICEKLNLVGKIDGILLDLGVSSPQLDDAERGFSF 123

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP-- 184
            K GPLDMRM  S G+SA++ +   + +DL  +L   GEE+ A +IA AIV   +SA   
Sbjct: 124 MKDGPLDMRMDDSKGMSAAEWLQHVSEQDLAWVLKTFGEERFAKKIASAIVNYNKSAVQN 183

Query: 185 ----FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
                  T  L+ LI +TV F K+   HPATRSFQA+RIF+N+E++EL + L+SA   L 
Sbjct: 184 GGECLTRTLQLAELIAQTVPF-KDKHKHPATRSFQAIRIFINSELDELEKVLQSALTVLA 242

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSG-----KVMAVRH-MIPSNAHPAVFQSITKKVVV 294
            GG L ++SFHSLEDR+VK F   +S      K + +R   I  N    V      K ++
Sbjct: 243 PGGRLSIISFHSLEDRMVKHFMRKQSQGEDIPKGLPLREDQIQRNQTLKVI----GKAIM 298

Query: 295 PTQEDVAFNRRSRSAKLRAGMR 316
           P+ E++A N R+RSA LR   R
Sbjct: 299 PSDEEIAQNPRARSAVLRIAER 320


>gi|319791660|ref|YP_004153300.1| s-adenosyL-methyltransferase mraw [Variovorax paradoxus EPS]
 gi|315594123|gb|ADU35189.1| S-adenosyl-methyltransferase MraW [Variovorax paradoxus EPS]
          Length = 307

 Score =  192 bits (489), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 130/311 (41%), Positives = 181/311 (58%), Gaps = 16/311 (5%)

Query: 15  HTIGDHVPVLL-EKVIALLN--PAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDP 68
           +T   H  VLL E V ALL+   A     +DATFG GG++R+          +IA D+D 
Sbjct: 2   NTPWTHTTVLLNEAVEALLSGSTAATGTYVDATFGRGGHARAILARLAPEGRLIAFDKDA 61

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
            AV+   E  R    +FS+    F  L + +PD  V+G++ DLGVSS QID   RGFSF+
Sbjct: 62  EAVA---EAARISDARFSIRHQGFRSLGE-LPDASVNGLLMDLGVSSPQIDNPVRGFSFR 117

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQ 186
             GPLDMRM  + G S ++ +  A ++ +  ++   GEE+ A +IA AIV RRQ   P  
Sbjct: 118 FDGPLDMRMDTTRGESVAEWLATAELQQIAEVIRDYGEERFAVQIAKAIVARRQERGPIS 177

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           TT +L+ L+  TV   +  + +PATR+FQA RIF+N E+EEL Q L ++   L+ GG L 
Sbjct: 178 TTTELAELVAGTVKTREQGQ-NPATRTFQAFRIFINAELEELQQALEASLSVLQPGGRLA 236

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+SFHSLEDR+VK+F A  S +V   R      A P V +    + + P++++V  N RS
Sbjct: 237 VISFHSLEDRIVKQFIAKHSKEVYDRRAPF---AAPKVMKLNALERIKPSEDEVRGNPRS 293

Query: 307 RSAKLRAGMRT 317
           RSA LR   RT
Sbjct: 294 RSAILRVAERT 304


>gi|169334628|ref|ZP_02861821.1| hypothetical protein ANASTE_01031 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259345|gb|EDS73311.1| hypothetical protein ANASTE_01031 [Anaerofustis stercorihominis DSM
           17244]
          Length = 308

 Score =  192 bits (489), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 114/304 (37%), Positives = 173/304 (56%), Gaps = 12/304 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+ VL ++ I +LN     + +D T G  G+S   CK  S     I +D+D F     + 
Sbjct: 3   HISVLYQETIDMLNIKEDGIYVDGTMGGAGHSLGICKKLSEEGIFIGIDQDDFVFDRAKV 62

Query: 77  TMR--DYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +   D K++F   +  F  +++ + D G+D   G++ DLGVSS QID   RGFSF+K G
Sbjct: 63  RLESTDCKKEF--VKGNFHDIKEILMDLGIDKIDGMMADLGVSSFQIDDETRGFSFKKDG 120

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  S   SA ++VN  + +DL R++   GEE+ A  IA  I+K R+  P +TT +
Sbjct: 121 PLDMRMDKSKSFSAKELVNTYSYEDLRRVISEYGEEQFAGNIAKHILKNREEKPIETTYE 180

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L  +I+  +    +   HPA ++FQA+RI VN+EI+ L Q +      L  GG L V++F
Sbjct: 181 LVEIIKNAIPKKFHQMKHPAKKTFQAIRIEVNDEIDALKQSVEDMIDVLDKGGRLAVITF 240

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VKK F+  +      +   +    +    + +T+K ++PT+E++  N RSRSA
Sbjct: 241 HSLEDRIVKKVFSEYAKGCTCPKEFPVCVCGNTPKVKVLTRKPLLPTEEEIEANPRSRSA 300

Query: 310 KLRA 313
           KLR 
Sbjct: 301 KLRV 304


>gi|83648530|ref|YP_436965.1| S-adenosyl-methyltransferase MraW [Hahella chejuensis KCTC 2396]
 gi|123530830|sp|Q2S9Y4|RSMH_HAHCH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|83636573|gb|ABC32540.1| S-adenosyl-methyltransferase MraW [Hahella chejuensis KCTC 2396]
          Length = 309

 Score =  192 bits (489), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 122/305 (40%), Positives = 178/305 (58%), Gaps = 20/305 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MG--SNVIALDRDPFAVSCGQE 76
           HV VLL + +  L      + +D TFG GG+S    K +G    ++ +D+DP A     E
Sbjct: 8   HVTVLLAEAVEALGVKADGLYIDGTFGRGGHSAEILKALGPQGRLLGIDKDPRARRTAME 67

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                 ++F   Q +F+ +  +V +    GVDGV+ DLGVSS Q+D  +RGFSF + GPL
Sbjct: 68  RFSG-DDRFLFRQGSFADMASFVSELQWPGVDGVLLDLGVSSPQLDEAERGFSFMQDGPL 126

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM   SG+SAS+ VN A  ++++++L  LGEE+ A R+A AIV  RQ+ P   T  L+
Sbjct: 127 DMRMDPDSGLSASEWVNTAKEEEISKVLWDLGEERFARRMAKAIVAARQTQPITRTLQLA 186

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            ++       +  + +PATR+FQA+RIF+N E+++LAQGL  A   LK GG L V+SFHS
Sbjct: 187 EIVAAANPRWEKGK-NPATRAFQAIRIFINRELDDLAQGLEQAFGVLKPGGRLTVISFHS 245

Query: 253 LEDRLVKKFF-----ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           LEDR+VK++        ++ K + V    P  A     + + KK+     E VA N R+R
Sbjct: 246 LEDRMVKQYMRDIVRGPKTPKWLPVVDDAPPKA-----KLVGKKIRAGETEVVA-NVRAR 299

Query: 308 SAKLR 312
           SA +R
Sbjct: 300 SAVMR 304


>gi|289671027|ref|ZP_06492102.1| S-adenosyl-methyltransferase MraW [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 352

 Score =  192 bits (489), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 128/315 (40%), Positives = 181/315 (57%), Gaps = 15/315 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HVPVL  +V+  L        LD TFG GG++R   +    G  ++ +D+DP A++  ++
Sbjct: 18  HVPVLYTQVLDGLQVTDNGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDPEAIAVAEQ 77

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
           T      + S+ + +F+ L   V    VDG++ DLGVSS Q+D   RGFSF K GPLDMR
Sbjct: 78  TF-GGDARVSIHRGSFAGLGQVVAAAAVDGILLDLGVSSPQLDVAGRGFSFGKDGPLDMR 136

Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M   SG SA++ +  A+ +++  +L   GEE+Q+ RIA AIV RR   P   T  L+ LI
Sbjct: 137 MDPDSGQSAAEWLAHASDREIADVLWTYGEERQSRRIARAIVARRAEQPLLRTAQLADLI 196

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
             +V    +++ HPATRSFQA+RI++N E+++L  GL +A  ALK GG L V+SFHSLED
Sbjct: 197 -ASVMPRGDSKTHPATRSFQAIRIYINRELDDLEAGLDAALAALKPGGRLAVISFHSLED 255

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           R+VK+F A R  K       +P  A P V   Q ++  +     E +  N R+RSA LR 
Sbjct: 256 RIVKQFMA-RYAKAPPSNRRLP-EAQPFVPTLQLVSGAIKADDAE-LNVNPRARSAVLRV 312

Query: 314 ----GMRTVERSIED 324
               GM   E  + D
Sbjct: 313 AEKLGMGNGESGMGD 327


>gi|317180415|dbj|BAJ58201.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori F32]
          Length = 308

 Score =  192 bits (489), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 122/304 (40%), Positives = 179/304 (58%), Gaps = 20/304 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVSCGQET 77
           H  VLL++V+    P    V++D T G GG+S++    K    +I +D+D FA    +E 
Sbjct: 8   HQSVLLQEVLQAFAPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFAQEIAKER 67

Query: 78  MRDYKEQFSLFQATFSQ-----LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           ++ ++ +++L    F++     L+ +  DK + GV+ DLGVSS+Q+D  +RGF+F  S  
Sbjct: 68  LKAFEGRYNLLSGGFAKRFKEALETH--DKEIKGVLVDLGVSSLQLDDDNRGFNFH-SHA 124

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM   G ++A  V+N   V  L +I    GE K+  +IAH I +RR   PF+  +DL
Sbjct: 125 LDMRMDLEGGLNAQKVINSYPVVALEKIFKDYGEIKEYKKIAHKIAERRAKKPFKDAKDL 184

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           S  +     FSKN +IHPAT  FQA+RI VN E+EEL + L+ A + LK G +L V+SFH
Sbjct: 185 SDFLSS---FSKNKKIHPATLVFQAVRIEVNRELEELKEFLQCA-RNLK-GAILCVISFH 239

Query: 252 SLEDRLVKKFFASRSGKVMA---VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SLED LVK  F   +   +          SN H A+ + +TKK + P+ E++  NRRSRS
Sbjct: 240 SLEDALVKNAFKDYAKNCICDPLSFKCACSNNH-ALGEILTKKPITPSPEEIKNNRRSRS 298

Query: 309 AKLR 312
           AK+R
Sbjct: 299 AKMR 302


>gi|311087661|gb|ADP67740.1| S-adenosyl-methyltransferase MraW [Buchnera aphidicola str. JF98
           (Acyrthosiphon pisum)]
          Length = 271

 Score =  192 bits (489), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 108/258 (41%), Positives = 167/258 (64%), Gaps = 12/258 (4%)

Query: 63  ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQI 118
           ++DRDP A S G + ++D   +F +    FS+L D+  ++     V+G++FDLGVSS+QI
Sbjct: 12  SIDRDPIAFSIGSK-IKD--SRFHIINENFSKLLDFAKNEKIIGKVNGIIFDLGVSSIQI 68

Query: 119 DCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177
           D   RGFSF+  GPLDMRM+ + GISAS+ + ++NVK+++ +L   GEE+ + +IA+AI 
Sbjct: 69  DDYRRGFSFKNDGPLDMRMNPNYGISASEWLFESNVKEISFVLKNFGEERFSRKIAYAIK 128

Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
           +R Q     +T +L+++I+KT+  +KN   HPA RSFQA+RI++N E+EE+ + L +  K
Sbjct: 129 RRSQIKKITSTLELANIIKKTIP-TKNKFKHPARRSFQAIRIYINQELEEIQKALENTLK 187

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV---VV 294
            LK GG + ++SFHSLEDRLVKKF    S K +    M  +        +   K+   ++
Sbjct: 188 ILKPGGRISIISFHSLEDRLVKKFMIKNSTKAIIPYGMPITEEQLNRLTTCKLKIINRIL 247

Query: 295 PTQEDVAFNRRSRSAKLR 312
           PTQ ++  N R+RS+ LR
Sbjct: 248 PTQNEINNNPRARSSVLR 265


>gi|328955350|ref|YP_004372683.1| S-adenosyl-methyltransferase MraW [Coriobacterium glomerans PW2]
 gi|328455674|gb|AEB06868.1| S-adenosyl-methyltransferase MraW [Coriobacterium glomerans PW2]
          Length = 321

 Score =  192 bits (489), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 122/311 (39%), Positives = 177/311 (56%), Gaps = 16/311 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MG--SNVIALDRDPFAVSCGQE 76
           H PV++ +V+  L P    VI+D T G  G++    + MG    +I +D+D  A++    
Sbjct: 12  HEPVMVAEVLEALRPEESSVIVDCTLGGAGHAVRLAREMGPEGQLIGIDQDDMALNSAAA 71

Query: 77  TMRDYKEQFS--LFQATFSQLQDY-----VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
            +       +  L +  F  L +      VP  GVDG +FDLGVSS Q+D  +RGFS+ +
Sbjct: 72  RLDREVPGVAHRLMKGNFRDLDELLCAAEVP--GVDGFLFDLGVSSPQLDIPNRGFSYHE 129

Query: 130 SGPLDMRMS--CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
             PLDMRM     G SA+DVVN  +  +L RIL   GEE+ A  IA  IV+RR++ P  T
Sbjct: 130 DAPLDMRMDPQSGGPSAADVVNGYSEAELIRILHAFGEERFAGAIAREIVRRRKTKPIST 189

Query: 188 TQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T +L  +I+  +   ++    HPA RSFQA+RI VN+E++ L  GL++A + L   G + 
Sbjct: 190 TTELVEVIKAAIPAAARRQGPHPARRSFQAIRIEVNHELDALLIGLQAALRWLNPAGRIC 249

Query: 247 VVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           V+S+HSLEDR+VK+ F S S G        +    +  + + ITKK +V T E+V  N R
Sbjct: 250 VISYHSLEDRIVKRLFQSASRGCTCPPDIPVCVCGNVPILKVITKKPLVATTEEVERNPR 309

Query: 306 SRSAKLRAGMR 316
           SRSAK+R  M+
Sbjct: 310 SRSAKIRVAMK 320


>gi|307718580|ref|YP_003874112.1| S-adenosyl-methyltransferase MraW [Spirochaeta thermophila DSM
           6192]
 gi|306532305|gb|ADN01839.1| S-adenosyl-methyltransferase MraW [Spirochaeta thermophila DSM
           6192]
          Length = 324

 Score =  192 bits (489), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 118/300 (39%), Positives = 173/300 (57%), Gaps = 9/300 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVSCGQET 77
           HVPVL E+V A L+   G +++DAT G GG+S +    + G  ++ +D DP  +S   E 
Sbjct: 8   HVPVLREEVGAFLSVREG-LVVDATLGEGGHSEALLESRPGIRILGVDADPIMLSRAGER 66

Query: 78  MRDYKEQFSLFQATFSQLQDYVP--DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           +  + ++  L Q  F ++ +  P  D+ V G++ DLG+SS  ++   RGFSF +  PLDM
Sbjct: 67  LSRFGDRVRLVQGWFDEVLESFPAEDRPV-GILMDLGISSYHLEKSGRGFSFLRREPLDM 125

Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           R+S    + ASDVVN  +  +L  I    GEE  + RIA AIV  R+  P  T+  L+ +
Sbjct: 126 RLSPYLPMKASDVVNTYSETELVDIFSRFGEEPFSKRIARAIVSERRKMPITTSDHLAEV 185

Query: 195 IQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           + K V   ++  RIHPATR FQALRI VN E+E + + +R+  + L  GG + V+SFHSL
Sbjct: 186 VMKAVPPKARRGRIHPATRVFQALRIVVNKELERVERAVRAGVRLLAPGGRMAVISFHSL 245

Query: 254 EDRLVKKFFASRSGKVMA-VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           EDR+VK+ F   +G         I       + + +TKK V P +E+V  N  SRSA+LR
Sbjct: 246 EDRIVKRLFRFYAGACTCPPEEPICRCGGQGIVEVLTKKPVRPGEEEVRANPASRSARLR 305


>gi|77919804|ref|YP_357619.1| S-adenosylmethionine-dependent methyltransferase [Pelobacter
           carbinolicus DSM 2380]
 gi|88909207|sp|Q3A2F8|RSMH_PELCD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|77545887|gb|ABA89449.1| predicted S-adenosylmethionine-dependent methyltransferase
           [Pelobacter carbinolicus DSM 2380]
          Length = 314

 Score =  192 bits (489), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 124/304 (40%), Positives = 175/304 (57%), Gaps = 11/304 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H  V+ E+V+  L P PG+V +D T G GG++R   +  +    ++ LDRD  A+     
Sbjct: 8   HSSVMPEEVLECLRPQPGEVFVDGTVGGGGHARLILEATAPDGLLVGLDRDREALEEAGR 67

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  + E+  L    F+     + +     VDG++ DLGVSS Q+D   RGFSFQ   PL
Sbjct: 68  QLASFGERVLLRHGNFADATRILAELDIATVDGILLDLGVSSFQLDTARRGFSFQSDAPL 127

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  S G++A+DVVN  + ++L RI    GEE+ A RIA  I K R   P  TT+ L+
Sbjct: 128 DMRMDTSAGMTAADVVNALSPEELARIFREYGEERYARRIARRIEKVRADEPLMTTRQLA 187

Query: 193 SLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            L++  V      +RIHPATR FQALRI VN E++ L +GLR +   LK GG + V+SFH
Sbjct: 188 ELVRDAVPGGHVPSRIHPATRVFQALRIHVNAELDSLREGLRRSLALLKPGGRMAVISFH 247

Query: 252 SLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK+FF S     +    +     N  P V   +T+K +  ++ ++A N R+RSA
Sbjct: 248 SLEDRIVKQFFRSEVQTCICPPGLPICACNRKPGV-ALLTRKGLKASESEIAANPRARSA 306

Query: 310 KLRA 313
            LRA
Sbjct: 307 VLRA 310


>gi|304396555|ref|ZP_07378436.1| S-adenosyl-methyltransferase MraW [Pantoea sp. aB]
 gi|304356064|gb|EFM20430.1| S-adenosyl-methyltransferase MraW [Pantoea sp. aB]
          Length = 313

 Score =  192 bits (489), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 126/312 (40%), Positives = 182/312 (58%), Gaps = 21/312 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN     + +D TFG GG+SR    ++G    +IA+DRDP A++   E
Sbjct: 7   HTTVLLDEAVNGLNIREDGIYIDGTFGRGGHSRLILSQLGEKGKLIAIDRDPQAIAAAAE 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  +FS+    FS L +YV ++     +DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 67  IT---DPRFSIIHGPFSALAEYVSERDLVGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   T++L
Sbjct: 124 LDMRMDPSRGHSAAEWLLHAEEADIAFVLKTYGEERFAKRIARAIVERNREQPMTRTREL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + +I   +   K+   HPATRSFQA+RI++N+E+EE+   L+ A + L   G L V+SFH
Sbjct: 184 AEVISIAMPV-KDKFKHPATRSFQAIRIWINSELEEIDIALKGAVQVLAPQGRLSVISFH 242

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHP--AVFQSITKKV--VVPTQEDVAFNRR 305
           SLEDRLVK+F    SR  +V A    IP   H   A+     K +  + P   +V+ N R
Sbjct: 243 SLEDRLVKRFMRDQSRGPQVPA---GIPMTEHQLRALGGRELKLLGKMSPGDAEVSENPR 299

Query: 306 SRSAKLRAGMRT 317
           +RS+ LR   +T
Sbjct: 300 ARSSVLRIAEKT 311


>gi|302335888|ref|YP_003801095.1| S-adenosyl-methyltransferase MraW [Olsenella uli DSM 7084]
 gi|301319728|gb|ADK68215.1| S-adenosyl-methyltransferase MraW [Olsenella uli DSM 7084]
          Length = 323

 Score =  192 bits (488), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 114/313 (36%), Positives = 181/313 (57%), Gaps = 20/313 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCG-- 74
           HVPV++++VIA L+P PG+ + D T G  G++    +        + +D+D  A+     
Sbjct: 7   HVPVMIDEVIAELDPRPGETVCDCTLGGAGHTLEMARRIQPDGLSLGIDQDDMALDAASA 66

Query: 75  --QETMRDYKEQFSLFQATFSQLQDY-----VPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
             +  +   + +F   +  F+ L D      VP  GVD  +FD+GVSS Q+D  +RGFS+
Sbjct: 67  RFERELPTARRRF--LKGNFASLDDLLVQAEVP--GVDCFLFDIGVSSPQLDIPERGFSY 122

Query: 128 QKSGPLDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
            +  PLDMRM    + ++A++V N  N  DL RIL + G+E+ A+RIA  IV+ R+ AP 
Sbjct: 123 HEDAPLDMRMGPGDNTLTAAEVTNSYNEADLARILRVYGDERNATRIARQIVRTREKAPI 182

Query: 186 QTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           +TT  L  +I+  +  + + +  HPA ++FQALRI VN+E++ L QGLR+A +    GG 
Sbjct: 183 ETTLQLVEVIKAAIPAAGRRHGGHPARKTFQALRIEVNHELDALDQGLRAAVRWANTGGR 242

Query: 245 LIVVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
           + V+S+HSLEDR+VK  F   S G V      + +  H  +    T++ +V +  +VA N
Sbjct: 243 ICVISYHSLEDRIVKHVFTELSQGCVCPPDLPVCACGHVPIVDVRTRRPLVASDAEVARN 302

Query: 304 RRSRSAKLRAGMR 316
            R+RSA +R  ++
Sbjct: 303 PRARSALMRVAVK 315


>gi|72161506|ref|YP_289163.1| methyltransferase [Thermobifida fusca YX]
 gi|88909224|sp|Q47QX7|RSMH_THEFY RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|71915238|gb|AAZ55140.1| bacterial methyltransferase [Thermobifida fusca YX]
          Length = 330

 Score =  192 bits (488), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 106/294 (36%), Positives = 171/294 (58%), Gaps = 10/294 (3%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74
           HVPV+LE+V+ LL PA   PG + +D T G GG++ +  +   G  ++ +DRD  A+   
Sbjct: 20  HVPVMLERVVELLAPALQQPGAIAVDGTLGLGGHAEALLRAHPGLRLVGVDRDTTALERA 79

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSG 131
           ++ +  Y ++  L  A +S +   + + G+D   G++FDLGVSS Q+D  +RGF++    
Sbjct: 80  RQRLAPYADRIDLVHAVYSDIPRILDELGIDRVHGLLFDLGVSSPQLDEAERGFAYSYDA 139

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM      +A+D+VN     +LTRI  + GEE+ A+RIA AIV++R   P +TT  
Sbjct: 140 PLDMRMDRTQERTAADIVNTYPASELTRIFRVYGEERFAARIAQAIVRQRAKEPVRTTGV 199

Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ L++  +   ++ +  HPA R+FQALRI VN+E+  L + L +A   L   G ++V+S
Sbjct: 200 LADLVRSAIPAAARRSGGHPAKRAFQALRIEVNSELSILERALPAALSRLAVAGRIVVLS 259

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
           +HSLEDR+ K+     S         +P        + +T+   +PT+++ A N
Sbjct: 260 YHSLEDRITKRVLTELSTDSTPPGLPVPLPDRQPELRLLTRGAELPTEQETAAN 313


>gi|319944706|ref|ZP_08018970.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Lautropia
           mirabilis ATCC 51599]
 gi|319741955|gb|EFV94378.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Lautropia
           mirabilis ATCC 51599]
          Length = 329

 Score =  192 bits (488), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 129/313 (41%), Positives = 185/313 (59%), Gaps = 18/313 (5%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MG--SNVIALDRDPFAVSCG 74
           G H+PVLL + +A L   P  V +D TFG GG+SR   + +G    ++ALDRDP AV+  
Sbjct: 15  GAHLPVLLHEAVAALAIRPDGVYVDGTFGRGGHSRHILQALGPKGRLLALDRDPEAVAAA 74

Query: 75  QETMRDYKE-QFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           +   ++  + +F +  A FS L + +   G   +DG++ DLG+SS Q+D   RGFSF   
Sbjct: 75  RAWKQESGDARFEIVHARFSSLDEVLDAHGLTHIDGLLLDLGISSPQVDDPRRGFSFTGD 134

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP---FQ 186
           GPLDMRM  + G+SA + + QA V+ +T +L   G+E+ A  IA  I  RR        Q
Sbjct: 135 GPLDMRMDPTVGLSAHEWLMQATVEQITEVLKRDGDERFAFPIAKEIAARRDQTDGQGIQ 194

Query: 187 TTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           TT+ L+ L+   +    KN+  +PATR+FQALRI  N+E  ELA+ L  A + L  GG L
Sbjct: 195 TTRQLADLVAGVIRRRQKNSAKNPATRTFQALRIHTNDEGGELARVLNVALRRLATGGRL 254

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITKKVVVPTQEDVAFN 303
            V+SFHS EDR+VK+F A  +G+  A RH +     A P + +S+ +  V+P + +VA N
Sbjct: 255 SVISFHSNEDRVVKQFIARHAGR-DAERHPVTGAWLAEP-LLKSLGR--VLPGEAEVATN 310

Query: 304 RRSRSAKLRAGMR 316
            R+RSA LR   R
Sbjct: 311 PRARSAILRVAER 323


>gi|111018109|ref|YP_701081.1| S-adenosyl-methyltransferase [Rhodococcus jostii RHA1]
 gi|123340963|sp|Q0SHR3|RSMH_RHOSR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|110817639|gb|ABG92923.1| S-adenosyl-methyltransferase [Rhodococcus jostii RHA1]
          Length = 338

 Score =  192 bits (488), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 118/326 (36%), Positives = 179/326 (54%), Gaps = 30/326 (9%)

Query: 20  HVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPF 69
           H+PVLL +   LL PA         G V++DAT G GG+S  F +    +  IALDRDP 
Sbjct: 17  HIPVLLHRADELLGPALTVNDPQGGGAVMIDATLGLGGHSEHFLRTYPQLRLIALDRDPH 76

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSSMQIDCGDR 123
           A+      +  + ++ +     +  ++D +   G      V G++FDLGVSSMQ+D  DR
Sbjct: 77  ALEIAGGRLAPFADRITFVHTRYDGIEDALDQAGLPAQESVHGILFDLGVSSMQLDESDR 136

Query: 124 GFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GF++    PLDMRM   +GI+A++V+N  +  DL RIL   GEE+ A +IA  IV++R  
Sbjct: 137 GFAYSIDAPLDMRMDPTTGITAAEVLNTYSHGDLARILSTYGEERFAGKIASEIVRQRAK 196

Query: 183 APFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            PF T+  L  L+ +++   ++    HPA R+FQALR+ VN E++ L   + +A  AL  
Sbjct: 197 EPFTTSAALVELLYRSIPAATRRTGGHPAKRTFQALRVEVNGELDSLRAAVPAALDALTV 256

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRS------GKVMAVRHMIPSNAHPAVFQSITKKVVVP 295
           GG ++ +S+ SLEDR+VK+    RS      G  + +  M P       F+ +T+     
Sbjct: 257 GGRVVFMSYQSLEDRVVKQEITPRSKSKSPEGLPVELPGMGPE------FRILTRGAERA 310

Query: 296 TQEDVAFNRRSRSAKLRAGMRTVERS 321
           ++++V  N RS   +LRA  R   RS
Sbjct: 311 SEQEVEENPRSAPVRLRAAERIARRS 336


>gi|300774256|ref|ZP_07084123.1| S-adenosyl-methyltransferase MraW [Sphingobacterium spiritivorum
           ATCC 33861]
 gi|300758935|gb|EFK55764.1| S-adenosyl-methyltransferase MraW [Sphingobacterium spiritivorum
           ATCC 33861]
          Length = 303

 Score =  192 bits (488), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 124/300 (41%), Positives = 170/300 (56%), Gaps = 16/300 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MG--SNVIALDRDPFAVSCGQE 76
           HVPV+L++ I  L+  P  V +D TFG GG+SR   K +G    + A D+DP A+   + 
Sbjct: 6   HVPVMLKECIDALSIKPDGVYVDVTFGGGGHSREILKHLGPKGRLFAFDQDPDAL---EN 62

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           T+ D  E+F+L    F  L++ +   GV   DG++ DLGVSS Q D  DRGFS +    L
Sbjct: 63  TIAD--ERFTLIHQNFRFLKNNLRLNGVKEVDGILADLGVSSHQFDAADRGFSIRFDADL 120

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM   S + A  V+N    +DL RI G+ GE   A  +A  +V  R SAP +T   L 
Sbjct: 121 DMRMDQVSDLDAKKVLNTYAEEDLHRIFGMYGEIMNAKSLAKTVVTARLSAPIETVAGLK 180

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I+K V   K ++ H   + FQALRI VN E+E L + L      LK  G L+V+S+HS
Sbjct: 181 EVIRKLVPKGKEHKYH--AQVFQALRIEVNKELEALQEFLLQTVSTLKPSGKLVVMSYHS 238

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDRLVK F A    K    +    +   P  FQ IT+K +  ++E+++ N RSRSAKLR
Sbjct: 239 LEDRLVKNFMAKGKFKGEVEKDFFGNEIKP--FQVITRKAITASEEELSTNNRSRSAKLR 296


>gi|74316129|ref|YP_313869.1| methyltransferase [Thiobacillus denitrificans ATCC 25259]
 gi|88909225|sp|Q3SMI1|RSMH_THIDA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|74055624|gb|AAZ96064.1| methyltransferase [Thiobacillus denitrificans ATCC 25259]
          Length = 311

 Score =  192 bits (488), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 126/308 (40%), Positives = 181/308 (58%), Gaps = 12/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGS--NVIALDRDPFAVSCGQE 76
           HVPVL ++ +A L   P  V +DATFG GG+SR    ++G+   ++ALDRDP A++    
Sbjct: 5   HVPVLAQEAVAALAIKPEGVYVDATFGRGGHSRMILARLGTLGRLVALDRDPAAIAA-GA 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + D +   +L Q+ FS+L   +   G   VDG++ D+GVSS Q+D   RGFSF+   PL
Sbjct: 64  ALDDPR--LTLRQSEFSRLGKVLDALGIARVDGILLDIGVSSPQLDDAARGFSFRFDAPL 121

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM   SGISA+D +  A  ++++ ++   GEE+ A  IA A+V  RQ     +T  L+
Sbjct: 122 DMRMDPGSGISAADWLATAEEEEISEVIRTYGEERFAKPIARALVAARQKEAITSTAQLA 181

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I   V   +  + HPATRSFQA+RI++N E+EEL   L    + L+AGG L V+SFHS
Sbjct: 182 GIIAAAVKKREPGQ-HPATRSFQAIRIYLNRELEELKAVLPQCVERLRAGGRLAVISFHS 240

Query: 253 LEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK+F  + S G+    R  IP+    A    +  +    +  +VA N R+RSA L
Sbjct: 241 LEDRIVKRFLRTESLGEQAPPRLPIPAAMLKAGRLRLVGRAQHASDAEVAANPRARSAVL 300

Query: 312 RAGMRTVE 319
           R   R  E
Sbjct: 301 RVAERVAE 308


>gi|297566101|ref|YP_003685073.1| S-adenosyl-methyltransferase MraW [Meiothermus silvanus DSM 9946]
 gi|296850550|gb|ADH63565.1| S-adenosyl-methyltransferase MraW [Meiothermus silvanus DSM 9946]
          Length = 294

 Score =  192 bits (488), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 119/305 (39%), Positives = 174/305 (57%), Gaps = 24/305 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+ VL ++ +  LN  PG + +DAT G GG+++   + G  V+  D+DP A+   +  + 
Sbjct: 7   HISVLYDEALNYLNVKPGGLYVDATLGGGGHTQGILQRGGRVVGFDQDPAAIERARNLLL 66

Query: 80  DYKE--QFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
                 Q +L +A F  LQ  +   G   VDGV+ DLGVSS   D  +RGFS++  GPLD
Sbjct: 67  PGLSLGQLTLVEANFRDLQPKLHALGIERVDGVLADLGVSSFHFDDPERGFSYRLEGPLD 126

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRM   G +A++VVN+  V++L RIL  LGEE +A RIA  I + R+  P +TT +L+ +
Sbjct: 127 MRMGKEGQTAAEVVNELEVEELARILRELGEEPKAWRIARFIEEARERKPIETTTELAEI 186

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           +++   F      HPA ++FQALRI+VN+E+  L + L +A   L   G L+V+SFHSLE
Sbjct: 187 VRRATGFRGAG--HPARKTFQALRIYVNDELGALRELLEAAVNVLAPQGRLVVISFHSLE 244

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           DR+VK F  +                     + +TKK + P +E+   N R+RSAKLRA 
Sbjct: 245 DRIVKHFLKNEP-----------------RLRVLTKKPLEPGEEEARENPRARSAKLRAA 287

Query: 315 MRTVE 319
            R  E
Sbjct: 288 ERLRE 292


>gi|300813315|ref|ZP_07093670.1| S-adenosyl-methyltransferase MraW [Peptoniphilus sp. oral taxon 836
           str. F0141]
 gi|300512586|gb|EFK39731.1| S-adenosyl-methyltransferase MraW [Peptoniphilus sp. oral taxon 836
           str. F0141]
          Length = 320

 Score =  192 bits (488), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 119/306 (38%), Positives = 173/306 (56%), Gaps = 10/306 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           HV VL  +V+  LN    K+ +DAT G  G+S+   K+ +N   +I +D+D  A+    E
Sbjct: 5   HVSVLYNEVLENLNIRENKIYMDATIGGAGHSKGIAKILNNSGLLIGIDQDKDAIKKSHE 64

Query: 77  TMRDYKEQFSLFQAT---FSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + +Y E   LF      F ++ D +  K VDG++ DLGVSS Q D G RGFS++    L
Sbjct: 65  VLSEY-ENVKLFNTNYKNFEEILDSLHIKKVDGILLDLGVSSYQFDKGKRGFSYRFDSEL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  +  ++A  +VN+ +  +L RI+   GEE  A RIA  IV+ R+     TT DL 
Sbjct: 124 DMRMDKTLPLTAKTIVNEYSKDELYRIIKEYGEENWAKRIAEFIVQERKIKKINTTFDLV 183

Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+K V   ++ +  HPA R+FQALRI VN+E+  L + +    + L  GG L ++SFH
Sbjct: 184 EVIKKAVPKGARRDGPHPAKRTFQALRIEVNDELNVLKKSIYKFVERLNPGGRLAIISFH 243

Query: 252 SLEDRLVKKFFAS-RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK  F    S  V     +I +       + IT+K +VPT+E++  N RS SAK
Sbjct: 244 SLEDRIVKNAFRYLYSDCVCPPEQIICTCDKKREIEIITRKPIVPTKEEIKNNNRSHSAK 303

Query: 311 LRAGMR 316
           LR   +
Sbjct: 304 LRVAEK 309


>gi|212697080|ref|ZP_03305208.1| hypothetical protein ANHYDRO_01645 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675855|gb|EEB35462.1| hypothetical protein ANHYDRO_01645 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 306

 Score =  192 bits (488), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 117/306 (38%), Positives = 164/306 (53%), Gaps = 12/306 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H  VLL + I  LN     +  D T G GG+S+   K  S    +I LD+D  A+   +E
Sbjct: 5   HKSVLLNETIKNLNIKEDGIYADLTLGKGGHSKEILKNLSPEGLLIGLDQDKDAIKAARE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++D+      F   F ++ D +     K +DG + D+GVSS QID GDRGFS+ K GPL
Sbjct: 65  NLKDFSNVL-FFNENFEKISDVLDKASLKMIDGALMDIGVSSYQIDNGDRGFSYMKDGPL 123

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+    ++A  +VN  ++ +L  I    GEE+ +  IA AIV  R+     TT  L 
Sbjct: 124 DMRMNKDNELTAKQIVNDYSLDELWEIFSKYGEERYSKTIAKAIVDYRKLHEINTTLQLR 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +++ K+V     N  HP  R FQALRI VN E+E L   L      L  GG L V++FHS
Sbjct: 184 NIVMKSVV---TNEAHPEKRVFQALRIEVNRELEVLENTLEKIVDRLNKGGRLCVITFHS 240

Query: 253 LEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK  F   S K +      +    H    + I+KK ++P+++++  NRRS SAKL
Sbjct: 241 LEDRIVKNKFKEMSKKCICPPEFPVCVCNHEKKVKIISKKPILPSKDELKTNRRSHSAKL 300

Query: 312 RAGMRT 317
           R   R 
Sbjct: 301 RVCERV 306


>gi|270291462|ref|ZP_06197684.1| methylase MraW [Pediococcus acidilactici 7_4]
 gi|304385176|ref|ZP_07367522.1| S-adenosyl-methyltransferase MraW [Pediococcus acidilactici DSM
           20284]
 gi|270280308|gb|EFA26144.1| methylase MraW [Pediococcus acidilactici 7_4]
 gi|304329370|gb|EFL96590.1| S-adenosyl-methyltransferase MraW [Pediococcus acidilactici DSM
           20284]
          Length = 317

 Score =  192 bits (487), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 117/305 (38%), Positives = 180/305 (59%), Gaps = 13/305 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGS--NVIALDRDPFAVSCGQE 76
           H  VLLE+ +A LN     V +D T G GG+S+    K+GS  ++ + D+D  A+   Q+
Sbjct: 6   HTTVLLEETVAGLNIRKDGVYVDCTLGGGGHSQLILSKLGSTGHLYSFDQDQTAIDYNQD 65

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y   +Q +  +A F  L++ +  +G   VDG+++DLGVSS Q D   RGFS++   
Sbjct: 66  HLAPYIANQQVTFIKANFRNLKNELNQRGIDHVDGILYDLGVSSPQFDDAQRGFSYRYDA 125

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  S  ++A  VVN+ +  DL RI    GEEK A ++A  I K R+  P  TT +
Sbjct: 126 PLDMRMDQSQELTAQAVVNEWSYNDLVRIFFRYGEEKYAKQVARRIEKVREQHPIVTTGE 185

Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I++ +   ++    HPA R FQA+RI VN+E+  L + L  A   L   G + V++
Sbjct: 186 LVEIIKEAIPAAARRTGGHPAKRVFQAIRIAVNDELGALEESLEQALDLLNDNGRISVIT 245

Query: 250 FHSLEDRLVKKFFASRS--GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           F SLEDRLVK+ F  ++  G + A   +IP++  P  F+ + +K +VP+++++  NRR+ 
Sbjct: 246 FQSLEDRLVKRMFKEKTEIGDLPAGLPVIPADKKPH-FKLVNRKPIVPSEDELKENRRAH 304

Query: 308 SAKLR 312
           SAKLR
Sbjct: 305 SAKLR 309


>gi|255326220|ref|ZP_05367306.1| S-adenosyl-methyltransferase MraW [Rothia mucilaginosa ATCC 25296]
 gi|255296674|gb|EET76005.1| S-adenosyl-methyltransferase MraW [Rothia mucilaginosa ATCC 25296]
          Length = 354

 Score =  192 bits (487), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 115/309 (37%), Positives = 175/309 (56%), Gaps = 15/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVI--------LDATFGAGGYSRSFCKMGSNV--IALDRDPF 69
           HVPV+L++ I LL P   + +        +D T G GG+S +  +   N+  I +DRD  
Sbjct: 37  HVPVMLDRCINLLAPGIERAVEERGTAYVIDGTLGMGGHSEALLERFENLVLIGIDRDLQ 96

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFS 126
           A +   E +  + ++F    A + ++   +     +G+DG++ DLGVSSMQ+D   RGF+
Sbjct: 97  AHAIAGERLARFGDRFVPVHAVYDEIDRAMETAGVQGIDGILMDLGVSSMQLDERTRGFA 156

Query: 127 FQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           +    PLDMRM+    ++A  VVN+ +   L RI+   GEEK ASRIA AI   R +AP 
Sbjct: 157 YSYDAPLDMRMNSEDELTARIVVNEYSEDQLRRIIRNWGEEKFASRIARAICTARANAPL 216

Query: 186 QTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           +TT +L  +IQK V   ++    HPA R+FQALRI VN+E+E L + + +A +AL  GG 
Sbjct: 217 ETTGELVRIIQKAVPVAAQRTGGHPAKRTFQALRIEVNHELEALERAVPAALEALNLGGR 276

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
            + +S+HSLED++VK+   + +         +    H    + IT+    PT E++  N 
Sbjct: 277 FVAMSYHSLEDKIVKRALTAEATSKAPKGFPVELEEHKPTVKIITRGAEPPTDEEIEQNS 336

Query: 305 RSRSAKLRA 313
           R+ SAKLRA
Sbjct: 337 RAASAKLRA 345


>gi|227538294|ref|ZP_03968343.1| S-adenosylmethionine-dependent methyltransferase involved in cell
           envelope biogenesis [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227241809|gb|EEI91824.1| S-adenosylmethionine-dependent methyltransferase involved in cell
           envelope biogenesis [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 303

 Score =  192 bits (487), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 124/300 (41%), Positives = 170/300 (56%), Gaps = 16/300 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MG--SNVIALDRDPFAVSCGQE 76
           HVPV+L++ I  L+  P  V +D TFG GG+SR   K +G    + A D+DP A+   + 
Sbjct: 6   HVPVMLKECIDALSIKPDGVYVDVTFGGGGHSREILKHLGPKGRLFAFDQDPDAL---EN 62

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           T+ D  E+F+L    F  L++ +   GV   DG++ DLGVSS Q D  DRGFS +    L
Sbjct: 63  TIAD--ERFTLIHQNFRFLKNNLRLNGVKEVDGILADLGVSSHQFDAADRGFSIRFDADL 120

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM   S + A  V+N    +DL RI G+ GE   A  +A  +V  R SAP +T   L 
Sbjct: 121 DMRMDQVSDLDAKKVLNTYAEEDLHRIFGMYGEIMNAKSLAKTVVTARLSAPIETVAGLK 180

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I+K V   K ++ H   + FQALRI VN E+E L + L      LK  G L+V+S+HS
Sbjct: 181 EVIRKLVPKGKEHKYH--AQVFQALRIEVNKELEALQEFLLQTVSTLKPSGKLVVMSYHS 238

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDRLVK F A    K    +    +   P  FQ IT+K +  ++E+++ N RSRSAKLR
Sbjct: 239 LEDRLVKNFMAKGKFKGEVEKDFFGNEIKP--FQVITRKAITASEEELSTNNRSRSAKLR 296


>gi|260893420|ref|YP_003239517.1| S-adenosyl-methyltransferase MraW [Ammonifex degensii KC4]
 gi|260865561|gb|ACX52667.1| S-adenosyl-methyltransferase MraW [Ammonifex degensii KC4]
          Length = 291

 Score =  192 bits (487), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 118/303 (38%), Positives = 174/303 (57%), Gaps = 26/303 (8%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRS---FCKMGSNVIALDRDPFAVSCGQETMRD 80
           ++++V+A L   PG V +D T G GG++ +   F      +I LDRDP A+S  ++ + +
Sbjct: 1   MVKEVLAYLAVKPGGVYVDCTVGGGGHAAAILAFIGDEGRLIGLDRDPEALSFARKRLGN 60

Query: 81  YKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
              +  L  A+F+ L + +     +GVDGV++DLGVSS Q+D  +RGF++++  PLDMR 
Sbjct: 61  -DPRVHLVHASFADLAEVLAGLGVRGVDGVLYDLGVSSYQLDRPERGFTYREDAPLDMRF 119

Query: 138 S-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
              S ++A+D+VN+   K+L  I+   GEE+ A RIA  IV+ R   P  TT  L  +I+
Sbjct: 120 DPSSPVTAADLVNRLEEKELACIIREFGEERWAKRIARFIVRARARRPILTTGQLVEIIK 179

Query: 197 KTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           + +  S   R  HPA R+FQALRI VN E+E L   L  A   LK GG L+V+S+HSLED
Sbjct: 180 EAIPASARRRGPHPARRTFQALRIAVNRELEALKASLPQAADCLKPGGRLVVLSYHSLED 239

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           RLVK FF   +                   + +TKK + P+ E+V  N R+ S KLRA  
Sbjct: 240 RLVKGFFRQYT-----------------CLRPLTKKPLTPSPEEVKQNPRASSCKLRAAE 282

Query: 316 RTV 318
           + +
Sbjct: 283 KIL 285


>gi|320540413|ref|ZP_08040063.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Serratia symbiotica str. Tucson]
 gi|320029344|gb|EFW11373.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Serratia symbiotica str. Tucson]
          Length = 313

 Score =  192 bits (487), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 119/310 (38%), Positives = 180/310 (58%), Gaps = 15/310 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYS-RSFCKMG--SNVIALDRDPFAVSCGQE 76
           H  VLL++ +  LN       +D TFG GG+S     ++G    ++A+DRDP A++  + 
Sbjct: 7   HATVLLDEAVNGLNIRSNGTYIDGTFGRGGHSCLILSQLGPEGRLLAIDRDPQAIAAAK- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           ++ D +  F++    FS L DYV ++     +DGV+ DLGVSS Q+D  +RGFSF + GP
Sbjct: 66  SIDDPR--FTIVHGPFSALSDYVRERELVGQIDGVLLDLGVSSPQLDDAERGFSFMRDGP 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G+SA++ + +A   D+  +L   GEE+ A RIA AIV+R +  P   T+ L
Sbjct: 124 LDMRMDPSTGLSAAEWLMKAEADDIAWVLKTFGEERFAKRIACAIVERNRVEPMTRTKQL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI       + ++ HPATRSFQA+RI++N+E+EE+   L    + L   G L ++SFH
Sbjct: 184 ADLIAGASPIREKHK-HPATRSFQAIRIYINSELEEIECALNGTLEVLAPQGRLSIISFH 242

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNRRSRS 308
           SLEDR+VK+F    S    A   +  +          T KV+   +P++ +VA N R+RS
Sbjct: 243 SLEDRIVKRFIRHHSRGAQAPAGIPLTEEQLRSMGGRTLKVLGKMMPSEAEVAGNPRARS 302

Query: 309 AKLRAGMRTV 318
           + LR   R +
Sbjct: 303 SVLRIAQRVL 312


>gi|308063505|gb|ADO05392.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori Sat464]
          Length = 308

 Score =  192 bits (487), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 122/305 (40%), Positives = 181/305 (59%), Gaps = 20/305 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVSCGQET 77
           H  VLL++V+    P    V++D T G GG+S++    K    +I +D+D FA    +E 
Sbjct: 8   HQSVLLQEVLQAFAPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFAQEIAKER 67

Query: 78  MRDYKEQFSLFQATFSQ-----LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           ++ ++ +++L    F++     L+ +  +K + GV+ DLGVSS+Q+D  +RGF+F  S  
Sbjct: 68  LKAFEGRYNLLSGGFAKRFKEALETH--NKEIKGVLVDLGVSSLQLDDDNRGFNFH-SHA 124

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM   SG++A  V+N   V  L +I    GE K+  +IAH I +RR   PF+  +DL
Sbjct: 125 LDMRMDLESGLNAQKVINSYPVVALEKIFKGYGEIKEYKKIAHKIAERRAKKPFKDAKDL 184

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           S  +      SKN +IHPAT  FQA+RI VN+E+EEL + L+ A + LK G +L V+SFH
Sbjct: 185 SDFLSS---LSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCA-RNLK-GAILCVISFH 239

Query: 252 SLEDRLVKKFFASRSGKVMA---VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SLED LVK  F   +   +          SN H A+ + +TKK + P+ E++  NRRSRS
Sbjct: 240 SLEDALVKNAFKDYAKNCICDPLSFKCTCSNNH-ALGEILTKKPITPSPEEIKNNRRSRS 298

Query: 309 AKLRA 313
           AK+RA
Sbjct: 299 AKMRA 303


>gi|160880611|ref|YP_001559579.1| S-adenosyl-methyltransferase MraW [Clostridium phytofermentans
           ISDg]
 gi|263433295|sp|A9KM86|RSMH2_CLOPH RecName: Full=Ribosomal RNA small subunit methyltransferase H 2;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase 2;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH 2
 gi|160429277|gb|ABX42840.1| S-adenosyl-methyltransferase MraW [Clostridium phytofermentans
           ISDg]
          Length = 317

 Score =  192 bits (487), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 106/303 (34%), Positives = 179/303 (59%), Gaps = 11/303 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H+ VLL++ I  LN  P  + +D T G GG++    K  S     I +D+D  A++   +
Sbjct: 10  HISVLLQETIDSLNIKPDGIYVDGTLGGGGHAYEVLKRLSPKGRYIGIDQDEDAIAAAGK 69

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + ++ +Q ++ ++ +  ++  + D G   VDG++ DLGVSS Q+D  +RGFS++++ PL
Sbjct: 70  RLSEFSDQVTIVRSNYCNMKQVLKDLGIDKVDGILLDLGVSSYQLDTPERGFSYRENAPL 129

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM   + ++A D+VN+ + +++ RI+   GE+K A  IA  IV+ R   P +TT +L+
Sbjct: 130 DMRMDNRNSLTARDIVNEYSEQEIYRIIRDYGEDKFAKNIAKHIVRMRSEKPLETTDELT 189

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             I+  +    + N  HPA ++FQA+RI +N+E+E L   L      LK  G L +++FH
Sbjct: 190 EAIKAAIPMKIRMNTGHPAKKTFQAIRIELNHELEVLTNTLEDMIDLLKEDGRLSIITFH 249

Query: 252 SLEDRLVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK  F       +   +  +   N  P     ITKK ++P+++++ +N+RS+SA
Sbjct: 250 SLEDRIVKAAFRKNENPCVCPPNFPVCVCNRKPKGIH-ITKKPILPSEQELEYNKRSKSA 308

Query: 310 KLR 312
           KLR
Sbjct: 309 KLR 311


>gi|330994431|ref|ZP_08318356.1| Ribosomal RNA small subunit methyltransferase H [Gluconacetobacter
           sp. SXCC-1]
 gi|329758431|gb|EGG74950.1| Ribosomal RNA small subunit methyltransferase H [Gluconacetobacter
           sp. SXCC-1]
          Length = 319

 Score =  192 bits (487), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 123/304 (40%), Positives = 176/304 (57%), Gaps = 14/304 (4%)

Query: 23  VLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSNVIALDRDPFAVSCGQE----- 76
           ++L +V+  L P  G   +D TFG GGY+R+        +  +DRDP A++ GQ      
Sbjct: 1   MMLAEVMDYLAPRDGGRYVDGTFGGGGYARAILASCACQLWGIDRDPAAIARGQALAHTC 60

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           T  D   +  L    F+ +   + + GV   DG+V DLGVSS QID  +RGFSF+  GPL
Sbjct: 61  TAPDGTPRLHLLHGGFAGMAALLAEAGVARVDGIVLDLGVSSYQIDQAERGFSFRMDGPL 120

Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           DMRM  +G +A+DVVN     +L  I+   GEE+ + R+A AIV  R  AP   T  L+ 
Sbjct: 121 DMRMGDTGPTAADVVNTLPEDELADIIYHYGEERLSRRVARAIVAARAEAPLLRTTQLAD 180

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           +++  V   ++  I PATR+FQ LRI VN+E+ ++ + L  A + L  GG L+VVSFHSL
Sbjct: 181 VVRSVVRPDRSG-IDPATRTFQGLRIHVNDELGQIRRVLEEAPRLLAPGGRLVVVSFHSL 239

Query: 254 EDRLVKKFFASRSGKVMAV-RH---MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           EDRLVK+  A  +G+  A  RH    +   A P  F+ +T + + P +E+   N R+RSA
Sbjct: 240 EDRLVKQAMALAAGRTPAPSRHDPRAMTQRAGPTGFRLLTGRPIRPGEEETRRNPRARSA 299

Query: 310 KLRA 313
           +LRA
Sbjct: 300 RLRA 303


>gi|254423474|ref|ZP_05037192.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. PCC 7335]
 gi|196190963|gb|EDX85927.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. PCC 7335]
          Length = 293

 Score =  192 bits (487), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 124/303 (40%), Positives = 174/303 (57%), Gaps = 30/303 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           HVPVL E+V+A L    G   LDAT G GG+S    K   NV  +ALD+D  A+S  ++ 
Sbjct: 12  HVPVLSEQVLAGLQIEDGGRYLDATVGGGGHSELILKAARNVELVALDQDLQALSAAKKR 71

Query: 78  MRDYKEQFSLFQATFSQLQDYVPD-KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
           +  ++++ +     FS+   Y P  +  DG++ D+GVSS Q+D   RGFSF++  PLDMR
Sbjct: 72  LEVWRDRTTFIHTNFSR---YEPGGRKFDGILADIGVSSTQLDQAQRGFSFRQEAPLDMR 128

Query: 137 M-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M S   + A ++VN  + K +   +   GEE+ + RIA  IV++R   PF TT +L+  +
Sbjct: 129 MDSTQELMAKEIVNHWDEKAIADTIYEYGEERLSRRIARRIVEKR---PFSTTTELAWEV 185

Query: 196 QKTVYFSK--NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
               Y +K  + RIHPATR+FQALRI VN E++ L   L  A   L  GG L ++SFHSL
Sbjct: 186 -AGAYPAKARHGRIHPATRTFQALRIAVNGELDVLKTLLAKAPDWLNPGGRLAIISFHSL 244

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           EDR+VK  +A R  + + +               ITKK +V T ++V  N RSRSAKLR 
Sbjct: 245 EDRIVK--YAYRGDERLEI---------------ITKKPLVATDQEVKENARSRSAKLRI 287

Query: 314 GMR 316
             R
Sbjct: 288 AER 290


>gi|91200077|emb|CAJ73120.1| similar to S-adenosyl-dependent methyltransferase [Candidatus
           Kuenenia stuttgartiensis]
          Length = 299

 Score =  192 bits (487), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 115/304 (37%), Positives = 167/304 (54%), Gaps = 22/304 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQE 76
           H PV++++V+  L   PG +ILD T G GG++       K    +I +D+D   ++  +E
Sbjct: 10  HEPVMVDEVLEYLCLQPGSIILDCTVGGGGHAGKIMDRIKPDGCLIGIDKDFDMLNMTKE 69

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + D    F L+ A +    + +   G+DGV   + DLG SS+Q D  +RGFSF K GPL
Sbjct: 70  CLSDRGCPFKLYHADYVDADEVLRQAGIDGVHGVLLDLGASSLQFDSAERGFSFSKEGPL 129

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM   +   A D++ + + +DL  +L   GEE+ + RIA  I+K R  +  ++T  L+
Sbjct: 130 DMRMDRTASFMAQDLLRKISERDLQALLKKYGEERWSKRIARRIIKERSVSGLKSTTQLA 189

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I++ V  S  +RIHPATR FQALRI VN E+E L + L     ++  G  + V+SFHS
Sbjct: 190 RIIERAVP-SMRHRIHPATRVFQALRIAVNKELESLEKFLNKIHFSMVKGARIAVISFHS 248

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK  F     K               +F  ITKK + P   ++  N RSRSAKLR
Sbjct: 249 LEDRIVKNSFIEMEDK--------------NIFHIITKKPLRPGASEIERNARSRSAKLR 294

Query: 313 AGMR 316
              R
Sbjct: 295 VAER 298


>gi|289663644|ref|ZP_06485225.1| S-adenosyl-methyltransferase MraW [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 352

 Score =  192 bits (487), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 128/315 (40%), Positives = 181/315 (57%), Gaps = 15/315 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HVPVL  +V+  L        LD TFG GG++R   +    G  ++ +D+DP A++  ++
Sbjct: 18  HVPVLYTQVLDGLQVTDNGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDPEAIAVAEQ 77

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
           T      + S+ + +F+ L   V    VDG++ DLGVSS Q+D   RGFSF K GPLDMR
Sbjct: 78  TF-GGDARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLDVAGRGFSFGKDGPLDMR 136

Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M   SG SA++ +  A+ +++  +L   GEE+Q+ RIA AIV RR   P   T  L+ LI
Sbjct: 137 MDPDSGQSAAEWLAHASDREIADVLWTYGEERQSRRIARAIVARRAEQPLLRTAQLADLI 196

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
             +V    +++ HPATRSFQA+RI++N E+++L  GL +A  ALK GG L V+SFHSLED
Sbjct: 197 -ASVMPRGDSKTHPATRSFQAIRIYINRELDDLEAGLDAALAALKPGGRLAVISFHSLED 255

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           R+VK+F A R  K       +P  A P V   Q ++  +     E +  N R+RSA LR 
Sbjct: 256 RIVKQFMA-RYAKAPPSNRRLP-EAQPFVPTLQLVSGAIKADDAE-LNVNPRARSAVLRV 312

Query: 314 ----GMRTVERSIED 324
               GM   E  + D
Sbjct: 313 AEKLGMGNGESGMGD 327


>gi|169629085|ref|YP_001702734.1| S-adenosyl-methyltransferase MraW [Mycobacterium abscessus ATCC
           19977]
 gi|263456523|sp|B1MP29|RSMH_MYCA9 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|169241052|emb|CAM62080.1| S-adenosyl-methyltransferase MraW [Mycobacterium abscessus]
          Length = 331

 Score =  192 bits (487), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 118/319 (36%), Positives = 176/319 (55%), Gaps = 18/319 (5%)

Query: 20  HVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPF 69
           H+PV+L++   LL PA         G V++DAT GAGG++  F  M  G  VI LDRD  
Sbjct: 10  HIPVMLDRCYELLAPALTADSTDGSGAVLVDATLGAGGHTEHFLTMLPGLTVIGLDRDTN 69

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQD------YVPDKGVDGVVFDLGVSSMQIDCGDR 123
           A+   +  +  +  +F      +  L D      Y     VDGV+FDLGVSSMQ+D  +R
Sbjct: 70  ALDIARSRLAPFGTRFVGVHTRYDGLADALDGLGYRTTSSVDGVLFDLGVSSMQLDQAER 129

Query: 124 GFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GF++    PLDMRM+    ++A+D++N  +  +L+R+L   GEE+ A RIA  IV+RR +
Sbjct: 130 GFAYSVDAPLDMRMNAQDELTAADILNTYSAVELSRVLSRFGEERFARRIADEIVRRRAN 189

Query: 183 APFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            PF  +  L  L+  T+   ++    HPA R+FQALRI VN E+E LA  + +A  AL+ 
Sbjct: 190 EPFTRSGQLVELLYATIPAATRRTGGHPAKRTFQALRIAVNAELESLATAIPAAMAALRP 249

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           GG + V+++ SLED++VK  FA+ +     +   +        F +IT+       E++ 
Sbjct: 250 GGRVAVMAYQSLEDKIVKAEFAAATASRSPIDLPVELPGDAPEFTAITRGAERANDEEIE 309

Query: 302 FNRRSRSAKLRAGMRTVER 320
            N RS   +LRA  R  +R
Sbjct: 310 VNPRSAPVRLRAVERVADR 328


>gi|262831574|sp|A1TAX6|RSMH_MYCVP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 324

 Score =  192 bits (487), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 116/311 (37%), Positives = 176/311 (56%), Gaps = 17/311 (5%)

Query: 20  HVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPF 69
           H+PVLL++ + LL PA         G  ++DAT GAGG+S  F        +I LDRDP 
Sbjct: 7   HIPVLLDRCVELLAPALTRTSTDGSGATLVDATLGAGGHSERFLTQFPALRLIGLDRDPD 66

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRG 124
           A+    + +  + ++ +L +  +  +   V +      GVD ++FDLGVSSMQ+D  +RG
Sbjct: 67  ALHIAGDRLARFGDRVTLVRTRYDGIAAAVAESNCAATGVDAILFDLGVSSMQLDRVERG 126

Query: 125 FSFQKSGPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           F++    PLDMRM S S ++A+ V+N  + K L R+L + GEEK A RIA  IV+RR + 
Sbjct: 127 FAYSVDAPLDMRMDSGSDLTAAQVLNTYDEKALARVLRVYGEEKFAGRIAAQIVRRRANT 186

Query: 184 PFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           PF TT +L  L+ + +   ++    HPA R+FQALRI VN E+E L   + +A + L+  
Sbjct: 187 PFSTTGELVELLYQAIPAPARRTGGHPAKRTFQALRIEVNAELESLRLAIPAALEVLRPH 246

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G + V+++ SLEDR+VK  FA+ +         +    H   F ++T+       E++  
Sbjct: 247 GRIAVMAYQSLEDRIVKTEFAAATASRTPPGLPVELPGHGPRFVALTRGAERADAEEIER 306

Query: 303 NRRSRSAKLRA 313
           N RS S +LRA
Sbjct: 307 NPRSASVRLRA 317


>gi|15601999|ref|NP_245071.1| S-adenosyl-methyltransferase MraW [Pasteurella multocida subsp.
           multocida str. Pm70]
 gi|20139143|sp|Q9CPB4|RSMH_PASMU RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|12720349|gb|AAK02218.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 321

 Score =  192 bits (487), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 126/320 (39%), Positives = 182/320 (56%), Gaps = 20/320 (6%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALD 65
           M+   H +   H+ VLL + +A L      + +D TFG GG+SR    ++  N  +IA+D
Sbjct: 1   MNDKDHFSSPAHITVLLNEAVAGLALKEKGIYIDGTFGRGGHSRLILSRLADNGRLIAID 60

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCG 121
           RDP A++  + T++D +  F +   +FS +            VDG++ DLGVSS Q+D  
Sbjct: 61  RDPRAIAEAK-TIQDPR--FHIEHRSFSDIPRICERLNLVGKVDGILLDLGVSSPQLDEA 117

Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF K GPLDMRM  + G+SAS+ + Q + +DL  +L   GEE+ A RIA AIV   
Sbjct: 118 ERGFSFMKDGPLDMRMDTTQGLSASEWLQQVSEQDLAWVLKTFGEERFAKRIAQAIVNYN 177

Query: 181 QSA------PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234
           + A      P   T  L+ LI   V F K+   HPATRSFQA+RIF+N E++EL   L+S
Sbjct: 178 KQALQHGTEPLSRTLQLAELIANAVPF-KDKHKHPATRSFQAIRIFINAELDELESVLKS 236

Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS--ITKKV 292
           A + L   G L ++SFHSLEDR+VK F   +S      + +   +      Q+  +  K 
Sbjct: 237 AVQVLAPQGRLAIISFHSLEDRMVKHFMRKQSKGEDIPKGLPLRDDQIQRTQTLKVIGKA 296

Query: 293 VVPTQEDVAFNRRSRSAKLR 312
           ++PT+++   N RSRSA LR
Sbjct: 297 IMPTEQEQQQNPRSRSAVLR 316


>gi|162148953|ref|YP_001603414.1| S-adenosyl-methyltransferase MraW [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209545294|ref|YP_002277523.1| S-adenosyl-methyltransferase MraW [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|263455983|sp|A9H0G9|RSMH_GLUDA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|161787530|emb|CAP57126.1| S-adenosyl-methyltransferase mraW [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209532971|gb|ACI52908.1| S-adenosyl-methyltransferase MraW [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 338

 Score =  192 bits (487), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 120/298 (40%), Positives = 170/298 (57%), Gaps = 16/298 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQETM 78
           H+PV+L +V+ +L P  G   LD TFG GGY+R+        + A+DRDP A+  GQ   
Sbjct: 9   HIPVMLAEVLEMLCPRDGATYLDGTFGGGGYARAILGAARCTLWAIDRDPAAIRRGQALQ 68

Query: 79  RDYKE-----QFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130
            + ++     +  + Q  F  +Q  + + GV   DGVV DLGVSS Q+D  +RGFSF+  
Sbjct: 69  AELRDAEGGMRLHMLQGGFGDMQGLLAESGVHSLDGVVLDLGVSSFQLDEVERGFSFRTD 128

Query: 131 GPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           GPLDMRM  +G +A+D+VN     DL  I+   GEE+ + R+A AIV  R  AP  TT  
Sbjct: 129 GPLDMRMGDTGPTAADIVNTMGESDLADIIYEYGEERMSRRVARAIVAARAQAPITTTFQ 188

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ +I+  V   ++  I PATRSFQ +RI VN+E+ ++  GL  A   L  GG L+VVSF
Sbjct: 189 LADIIRSVVPGDRSG-IDPATRSFQGIRIHVNDELGQIVTGLEQALALLAPGGRLVVVSF 247

Query: 251 HSLEDRLVKKFFASRSGKVMA-----VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
           HSLEDRLVK+     +G++        R M    A P  F+ +T + + P + +   N
Sbjct: 248 HSLEDRLVKQALNRAAGRMPGPSRHDPRSMRAEQAAPD-FRLLTSRALRPGETECRAN 304


>gi|254779311|ref|YP_003057416.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori B38]
 gi|263456117|sp|C7BZ94|RSMH_HELPB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|254001222|emb|CAX29192.1| Putative S-adenosyl-methyltransferase MraW [Helicobacter pylori
           B38]
          Length = 308

 Score =  192 bits (487), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 122/304 (40%), Positives = 180/304 (59%), Gaps = 20/304 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVSCGQET 77
           H  VLL++V+    P    V++D T G GG+S++    K    +I +D+D FA    +E 
Sbjct: 8   HQSVLLQEVLQAFTPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFAQEIAKER 67

Query: 78  MRDYKEQFSLFQATFSQ-----LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           ++ ++ +++L    F++     L+ +  +K + GV+ DLGVSS+Q+D  DRGF+F  S  
Sbjct: 68  LKAFEGRYNLLSGGFAKRFKEALETH--NKEIKGVLVDLGVSSLQLDDDDRGFNFH-SHA 124

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM   S ++A  V+N   V  L +I    GE K+  +IAH I +RR   PF+  +DL
Sbjct: 125 LDMRMDLKSDLNAQKVINSYPVIALEKIFRDYGEIKEYKKIAHKIAERRTKKPFKDAKDL 184

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           S  +     FSKN +IHPAT  FQA+RI VN+E+EEL + L+ A + LK G +L V+SFH
Sbjct: 185 SEFLSS---FSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCA-RNLK-GAILCVISFH 239

Query: 252 SLEDRLVKKFFASRSGKVMA---VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SLED LVK  F   +   +          SN H A+ + +TKK + P+ E++  NRRSRS
Sbjct: 240 SLEDGLVKNAFKDYAKNCICDPLSFKCACSNNH-ALGEILTKKPITPSPEEIKNNRRSRS 298

Query: 309 AKLR 312
           AK+R
Sbjct: 299 AKMR 302


>gi|194246838|ref|YP_002004477.1| S-adenosyl-methyltransferase [Candidatus Phytoplasma mali]
 gi|262824840|sp|B3R0Q2|RSMH_PHYMT RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|193807195|emb|CAP18636.1| S-adenosyl-methyltransferase [Candidatus Phytoplasma mali]
          Length = 300

 Score =  192 bits (487), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 119/305 (39%), Positives = 175/305 (57%), Gaps = 14/305 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76
           +H+PVL ++V+  LN     + +DAT G GG+S    +      + A D+D FA+   ++
Sbjct: 4   NHIPVLPKEVLKYLNVKSSGIYVDATLGGGGHSELILEKLKKGFLYAFDQDIFAIKQSKK 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
              +   +  L  + F  L+  +  +GV   DG++FDLG+SS QID  +RGFS+  +  L
Sbjct: 64  LFAN-NHKIELIHSNFFFLKQELNKRGVFFVDGIIFDLGLSSFQIDDKERGFSYLSNEFL 122

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     ++A  ++N  + + L  I    G+EK +S IA  I+K+R   P  TT +L 
Sbjct: 123 DMRMDREQKLTAHYIINNYSFEKLRNIFFNFGQEKNSSLIAAEIIKKR---PLNTTFELV 179

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +  K   F+ N + H + + FQALRI VN E+E L + L      LK G  ++V+SFHS
Sbjct: 180 EIADK---FNYNRKGHSSKKIFQALRIEVNKELELLQKTLHQCLSLLKEGSSIVVISFHS 236

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDRLVK FF + S   +  +  I SN    V + ITKKVV P+ E++AFN RSRSAKLR
Sbjct: 237 LEDRLVKNFFRANSIINLPTKLPIVSN-FKTVLKIITKKVVKPSLEEIAFNHRSRSAKLR 295

Query: 313 AGMRT 317
           A ++ 
Sbjct: 296 AAVKN 300


>gi|323701280|ref|ZP_08112955.1| S-adenosyl-methyltransferase MraW [Desulfotomaculum nigrificans DSM
           574]
 gi|323533882|gb|EGB23746.1| S-adenosyl-methyltransferase MraW [Desulfotomaculum nigrificans DSM
           574]
          Length = 311

 Score =  191 bits (486), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 117/303 (38%), Positives = 171/303 (56%), Gaps = 11/303 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H+ VLL++ I  LN  P  + +D T G  G+S    +    G  +I LD+DP A++  ++
Sbjct: 5   HISVLLKESINGLNINPQGIYVDCTLGGAGHSTEILRRLGPGGRLIGLDQDPAAIANAEQ 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++ +  +F   +A F  ++  + + G   VDGV+FDLGVSS Q+D  +RGFS+     L
Sbjct: 65  RLQRFAGRFQAVRANFVGIKQVLAELGISTVDGVLFDLGVSSYQLDTPERGFSYMHDAEL 124

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM      SA ++VN    ++LT I+   GEE+ A RIA  IV+ RQ  P  TT  L 
Sbjct: 125 DMRMDPDQPTSAKELVNDLPEEELTNIIRKYGEERWAKRIASFIVRERQRRPITTTGQLV 184

Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  V   ++    HPA R+FQALRI VNNE+  L   ++ A + LK GG + V++FH
Sbjct: 185 EIIKAAVPANARREGPHPAKRTFQALRIAVNNELGILKGAIQGAVQVLKPGGRICVITFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNA--HPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR++K  F   +            N    P V + IT K + P  E++A+N R+RSA
Sbjct: 245 SLEDRIIKDTFKELANPCTCPPSFPVCNCGKQPQV-KIITNKPIEPGAEELAYNPRARSA 303

Query: 310 KLR 312
           KLR
Sbjct: 304 KLR 306


>gi|120404503|ref|YP_954332.1| S-adenosyl-methyltransferase MraW [Mycobacterium vanbaalenii PYR-1]
 gi|119957321|gb|ABM14326.1| S-adenosyl-methyltransferase MraW [Mycobacterium vanbaalenii PYR-1]
          Length = 378

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 116/311 (37%), Positives = 176/311 (56%), Gaps = 17/311 (5%)

Query: 20  HVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPF 69
           H+PVLL++ + LL PA         G  ++DAT GAGG+S  F        +I LDRDP 
Sbjct: 61  HIPVLLDRCVELLAPALTRTSTDGSGATLVDATLGAGGHSERFLTQFPALRLIGLDRDPD 120

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRG 124
           A+    + +  + ++ +L +  +  +   V +      GVD ++FDLGVSSMQ+D  +RG
Sbjct: 121 ALHIAGDRLARFGDRVTLVRTRYDGIAAAVAESNCAATGVDAILFDLGVSSMQLDRVERG 180

Query: 125 FSFQKSGPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           F++    PLDMRM S S ++A+ V+N  + K L R+L + GEEK A RIA  IV+RR + 
Sbjct: 181 FAYSVDAPLDMRMDSGSDLTAAQVLNTYDEKALARVLRVYGEEKFAGRIAAQIVRRRANT 240

Query: 184 PFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           PF TT +L  L+ + +   ++    HPA R+FQALRI VN E+E L   + +A + L+  
Sbjct: 241 PFSTTGELVELLYQAIPAPARRTGGHPAKRTFQALRIEVNAELESLRLAIPAALEVLRPH 300

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G + V+++ SLEDR+VK  FA+ +         +    H   F ++T+       E++  
Sbjct: 301 GRIAVMAYQSLEDRIVKTEFAAATASRTPPGLPVELPGHGPRFVALTRGAERADAEEIER 360

Query: 303 NRRSRSAKLRA 313
           N RS S +LRA
Sbjct: 361 NPRSASVRLRA 371


>gi|223937428|ref|ZP_03629333.1| S-adenosyl-methyltransferase MraW [bacterium Ellin514]
 gi|223893979|gb|EEF60435.1| S-adenosyl-methyltransferase MraW [bacterium Ellin514]
          Length = 300

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 112/296 (37%), Positives = 168/296 (56%), Gaps = 8/296 (2%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETMRD 80
           +L +V+A L    G    D T G  G++ +     S    +   DRD  AV   Q  + +
Sbjct: 1   MLAEVLAALKVKSGGKYADGTLGGAGHATAILAASSPNGWLFGCDRDGVAVEAAQARLAE 60

Query: 81  YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC- 139
           +  +F + +  +++L + +  +  DGV+ DLGVSS Q+D  +RGFSFQ+ GPLDMRM   
Sbjct: 61  FAGRFEISRGNYAELFETLEPESFDGVLLDLGVSSPQLDVAERGFSFQQEGPLDMRMDKR 120

Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199
             ++A+D++N A+ ++L  I   LG+E Q+ R A AI   RQ  PF+TT  L+ LI++  
Sbjct: 121 QQLTAADLLNHASAEELAEIFWKLGDEPQSRRFARAIEHDRQQRPFETTGQLAGLIERLA 180

Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259
                 + HPATR FQALR+ VN+E+  L +GL  A + LK GG L V++FHSLEDR VK
Sbjct: 181 P-RHGKKAHPATRVFQALRMAVNDELGSLERGLTGAVRILKPGGRLAVITFHSLEDRKVK 239

Query: 260 KFFASRSGKVMAVRHM-IPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           +F   +S        + +P    P     + + +K V+P + +   N RSRSA+LR
Sbjct: 240 EFGRQKSRDYTFEGEVDVPELRKPRTPELKWVQRKAVLPGEAEQKENPRSRSAQLR 295


>gi|21672500|ref|NP_660567.1| hypothetical protein BUsg218 [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|8134808|sp|O85295|RSMH_BUCAP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|3435166|gb|AAC32335.1| hypothetical protein [Buchnera aphidicola]
 gi|21623120|gb|AAM67778.1| hypothetical 36.0 kDa protein [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 312

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 114/307 (37%), Positives = 182/307 (59%), Gaps = 17/307 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H+ V+ +++I  L      + +D TFG GG++ S  K       + A+DRDP +V  G +
Sbjct: 7   HISVMKKELIESLKIKKNGIYIDGTFGMGGHALSILKTIGREGRLYAIDRDPNSVFIGNQ 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            ++D  ++F +  + FS++ +Y         V+G++FDLG SS+QI+   RGFSF+K+GP
Sbjct: 67  -IKD--KRFHIIHSNFSKILNYAKYNNIIGKVNGILFDLGTSSLQIENEKRGFSFKKNGP 123

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+  +GISAS+ + ++++  +  +L   GEE+ + RIA+AI    +      T +L
Sbjct: 124 LDMRMNPHAGISASEWLFKSDINKIYFVLKNFGEERFSKRIAYAIKDYCKKKKINNTFEL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             +I+K     KN   HPA R+FQA+RI++N E+EE+ +GL ++ K LK GG L ++SFH
Sbjct: 184 VDIIKKATPI-KNKFKHPAKRTFQAIRIYINQELEEIKKGLENSLKILKPGGRLSIISFH 242

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVV----PTQEDVAFNRRSR 307
           SLEDR+VK F    S K   V + +P   +      I K  ++    PTQ+++  N R+R
Sbjct: 243 SLEDRIVKNFMMKYSKKA-TVPYGLPITENKLETLRICKLKIINRIFPTQKEIEKNPRAR 301

Query: 308 SAKLRAG 314
           S+ LR  
Sbjct: 302 SSVLRTA 308


>gi|325847850|ref|ZP_08170072.1| S-adenosyl-methyltransferase MraW [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325480868|gb|EGC83921.1| S-adenosyl-methyltransferase MraW [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 306

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 118/307 (38%), Positives = 165/307 (53%), Gaps = 14/307 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H  VLL + I  LN     +  D T G GG+S+   K  S    ++ LD+D  A+   +E
Sbjct: 5   HKSVLLNETIKNLNIKEDGIYADLTLGKGGHSKEILKNLSPEGLLVGLDQDKDAIKAAKE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            ++D+      F   F ++ D V DK     +DG + D+GVSS QID GDRGFS+ K GP
Sbjct: 65  NLKDFSNVL-YFNENFEKISD-VLDKASLKMIDGALMDIGVSSYQIDNGDRGFSYMKDGP 122

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+    ++A  +VN  ++ +L  I    GEE+ +  IA AIV  R+     TT  L
Sbjct: 123 LDMRMNKDNELTAKQIVNDYSLDELWEIFSKYGEERYSKTIAKAIVDYRKLHEINTTLQL 182

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +++ K+V     N  HP  R FQALRI VN E+E L   L      L  GG L V++FH
Sbjct: 183 RNIVMKSVV---TNEAHPEKRVFQALRIEVNRELEVLENTLEKIVDRLNKGGRLCVITFH 239

Query: 252 SLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK  F   S K +      +    H    + I+KK ++P+++++  NRRS SAK
Sbjct: 240 SLEDRIVKNKFKEMSKKCICPPEFPVCVCNHEKKVKIISKKPILPSKDELKTNRRSHSAK 299

Query: 311 LRAGMRT 317
           LR   R 
Sbjct: 300 LRVCERV 306


>gi|256846968|ref|ZP_05552414.1| MraW methylase [Lactobacillus coleohominis 101-4-CHN]
 gi|256715632|gb|EEU30607.1| MraW methylase [Lactobacillus coleohominis 101-4-CHN]
          Length = 313

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 121/305 (39%), Positives = 172/305 (56%), Gaps = 12/305 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQE 76
           DHV VLL + +A LN  P    +DAT G GG+S        G ++ A D+D  A+   QE
Sbjct: 4   DHVTVLLHEAVAGLNVQPDGQYVDATLGGGGHSGLILSKLHGGHLYAFDQDRTAIEYNQE 63

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            + DY  + Q +  +  F  LQ  +   GV   DG+V+DLGVSS Q D G RGFS+Q   
Sbjct: 64  HLADYLARHQLTFIKDNFKNLQVDLNKLGVTKVDGIVYDLGVSSPQFDDGQRGFSYQHDA 123

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM+    +SA ++VNQ     L +IL   GEEK A  IA AI + R+  P  TT +
Sbjct: 124 KLDMRMNQEQSLSAYEIVNQWPYDRLVKILYRYGEEKFAKSIARAIERHREERPITTTFE 183

Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I++ +   ++ +  HPA ++FQA+RI VN+E+  L   L  A + L  GG + V++
Sbjct: 184 LVDVIKEAIPARARRHGGHPAKKTFQAIRIAVNDELGVLEASLEQAFEMLNVGGRISVIT 243

Query: 250 FHSLEDRLVKKFFASRS--GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           F SLEDRLVK  F  R+    V A   +IP    P  F+ + +K + P+ +++A N R+ 
Sbjct: 244 FQSLEDRLVKTMFRERTTLKDVPAGLPVIPKEQQPD-FKLVNRKAIEPSPQELASNHRAH 302

Query: 308 SAKLR 312
           SA LR
Sbjct: 303 SAHLR 307


>gi|56750578|ref|YP_171279.1| S-adenosyl-methyltransferase MraW [Synechococcus elongatus PCC
           6301]
 gi|81299784|ref|YP_399992.1| S-adenosyl-methyltransferase MraW [Synechococcus elongatus PCC
           7942]
 gi|68565438|sp|Q5N4L0|RSMH_SYNP6 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|123557084|sp|Q31PL4|RSMH_SYNE7 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|56685537|dbj|BAD78759.1| hypothetical protein [Synechococcus elongatus PCC 6301]
 gi|81168665|gb|ABB57005.1| methyltransferase [Synechococcus elongatus PCC 7942]
          Length = 296

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 121/307 (39%), Positives = 173/307 (56%), Gaps = 28/307 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           HV VL  +++  L P  G   LDAT G GG+S        N  VI LDRDP A++  Q  
Sbjct: 13  HVTVLQRELVEGLLPDRGGWFLDATLGGGGHSELLLSEWPNTQVIGLDRDPAAIAASQTR 72

Query: 78  MRDYKEQFSLFQATFSQLQDYVP-DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
           ++ Y ++       F+   +Y P D+   G++ DLGVSS Q+D  +RGFSF++  PLDMR
Sbjct: 73  LQLYSDRVQFQHVNFA---NYQPGDRRFQGIMADLGVSSPQLDEAERGFSFRQDAPLDMR 129

Query: 137 MSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M  +  ++A+ +VN+ +  DL  ++   GEE+ + RIA  IV++R   PF+ T +LS  I
Sbjct: 130 MDPTAELTAAAIVNEWDETDLANLIYQYGEERLSRRIARRIVEQR---PFERTLELSEAI 186

Query: 196 QKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
              V  S +  RIHPATR+FQALRI VN E++ L   L  A   L  GG + ++SFHSLE
Sbjct: 187 AGAVPRSYRYGRIHPATRTFQALRIAVNGELDALQTFLDRAPDWLAPGGRIALISFHSLE 246

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           DR++K   A R    + V               IT+K ++P++ ++  N RSRSAKLR  
Sbjct: 247 DRIIKH--ALRGDDRLTV---------------ITRKPLLPSEAEIESNPRSRSAKLRIA 289

Query: 315 MRTVERS 321
            R +  S
Sbjct: 290 ERVLPES 296


>gi|187932019|ref|YP_001892004.1| S-adenosyl-methyltransferase MraW [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|263447507|sp|B2SDL2|RSMH_FRATM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|187712928|gb|ACD31225.1| S-adenosyl-methyltransferase MraW [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 305

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 121/307 (39%), Positives = 182/307 (59%), Gaps = 22/307 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77
           H  VLL++ I  LN  P  + +DATFG GG+S++         +IA D+D  A+S  +E 
Sbjct: 2   HYSVLLQESINDLNINPQGIYIDATFGRGGHSKAILNRLTTGRLIAFDKDLDAISYAREN 61

Query: 78  MRDYKEQFSLFQ---ATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
                 QFS F+   A+F+ + DY         +DG++ DLGVSS Q+D   RGFSF  +
Sbjct: 62  F-----QFSNFEIVHASFASIYDYCLQHSLLGKIDGIIMDLGVSSPQLDNAARGFSFTHN 116

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTT 188
           GPLDMRM  S GI+AS  + + +V DL+ I  + GEE+ A +IA  I    +Q+   +TT
Sbjct: 117 GPLDMRMDVSKGITASQALEELSVDDLSYIFKVYGEERFAKKIALRIKDYIQQNGSIRTT 176

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ LI+ T+   K  + +PATR FQALRI+VNNE+++L   L +    +K+GG +  +
Sbjct: 177 LELAELIRATI--GKKEKKNPATRCFQALRIYVNNELKDLEALLENILAVIKSGGRIAAI 234

Query: 249 SFHSLEDRLVKKFFASR---SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           SFHSLEDR+VK+ F++      ++  +  M+P ++     + ITKK     ++++  N R
Sbjct: 235 SFHSLEDRIVKQKFSALINPKQELNRITKMLPQDSSQIKLKWITKK-SKANEDELNQNVR 293

Query: 306 SRSAKLR 312
           SRSA LR
Sbjct: 294 SRSAILR 300


>gi|226323690|ref|ZP_03799208.1| hypothetical protein COPCOM_01465 [Coprococcus comes ATCC 27758]
 gi|225207874|gb|EEG90228.1| hypothetical protein COPCOM_01465 [Coprococcus comes ATCC 27758]
          Length = 311

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 114/308 (37%), Positives = 172/308 (55%), Gaps = 21/308 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H  VLL++ I  LN  P  + +D T G GG++   C+  +N    I +D+D  A+     
Sbjct: 5   HKSVLLDETIEGLNIKPDGIYVDGTLGGGGHAYEVCRRLNNKGSFIGIDQDAAAIEAAGT 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + D+ E+ ++ ++ +  ++  + +KG   VDG+V DLGVSS Q+D  DRGFS++   PL
Sbjct: 65  RLSDFGERVTIIRSNYCDMKSRLHEKGIDKVDGIVLDLGVSSYQLDTADRGFSYRVDAPL 124

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     +SA ++VN  +  DL RI+   GE+K A  IA  IV  R+  P +TT  L+
Sbjct: 125 DMRMDTRQTLSAKEIVNGYSEMDLFRIIRDYGEDKFAKNIAKHIVMAREKGPIETTGQLA 184

Query: 193 SLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
            +I++++   F K +  HPA R+FQA+RI  N E+E L   L      L  GG + +++F
Sbjct: 185 EIIRQSIPMKFQKMSG-HPAKRTFQAIRIECNRELEVLRDSLDDMIDILNPGGRICIITF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF------QSITKKVVVPTQEDVAFNR 304
           HSLEDR+VK  F              PS     V       + ITKK ++P++E++  N 
Sbjct: 244 HSLEDRIVKGIFKKNENPCTC-----PSTFPVCVCGKVSKGKVITKKPILPSEEEMEVNS 298

Query: 305 RSRSAKLR 312
           RS+SAKLR
Sbjct: 299 RSKSAKLR 306


>gi|323489493|ref|ZP_08094720.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Planococcus donghaensis MPA1U2]
 gi|323396624|gb|EGA89443.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Planococcus donghaensis MPA1U2]
          Length = 312

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 115/311 (36%), Positives = 174/311 (55%), Gaps = 11/311 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
           +H  VLL + +  LN  P  + +D T G  G+S    +  S+   +   D+D  A++  +
Sbjct: 3   NHTTVLLHETVDGLNVRPDGIYVDCTLGGAGHSEYLVQQLSDQGHLYCFDQDATAIAHAK 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E +++Y  + +   A F  L++ +   GV   DG+++DLGVSS Q+D  +RGFS+    P
Sbjct: 63  EKLQEYLHRITFIHANFKFLKEELEMHGVEKVDGILYDLGVSSPQLDTPERGFSYHNDAP 122

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S  +SA  VVN+ + +DL RI    GEEK + +IA  I   R+  P +TT  L
Sbjct: 123 LDMRMDQSAELSAYHVVNEWSFEDLVRIFYRYGEEKFSKQIARKIEAAREKQPIETTGQL 182

Query: 192 SSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
              I+  +  F++    HPA R FQA+RI VN+E+      L+ A   L  GG + V++F
Sbjct: 183 VECIKDGIPAFARRKGGHPAKRVFQAIRIAVNDELGAAETSLQDAVSLLAIGGRISVITF 242

Query: 251 HSLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           HSLEDRL K  F  AS   ++     +IP    P + + IT+K ++P++E++  N RSRS
Sbjct: 243 HSLEDRLCKAIFKEASSLPELPPNLPVIPDGMEP-ILKLITRKPILPSEEELEHNNRSRS 301

Query: 309 AKLRAGMRTVE 319
           AKLR   +  E
Sbjct: 302 AKLRIAEKINE 312


>gi|326771704|ref|ZP_08230989.1| S-adenosyl-methyltransferase MraW [Actinomyces viscosus C505]
 gi|326637837|gb|EGE38738.1| S-adenosyl-methyltransferase MraW [Actinomyces viscosus C505]
          Length = 375

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 123/328 (37%), Positives = 189/328 (57%), Gaps = 32/328 (9%)

Query: 17  IGDHVPVLLEKVIALLNPA-------------PGKVILDATFGAGGYSRSFCKMGSN--V 61
           +G H PVLLE+ + LL PA                V++D T G GG++ +  +  +   V
Sbjct: 14  VGRHKPVLLERCLDLLAPAIEGAAGSAAAPGPAQPVMIDCTLGMGGHTEAALERFATLKV 73

Query: 62  IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL-----QDYVPDKG-VDGVVFDLGVSS 115
           + +DRDP A++     +  + ++F   QAT+  +     +  V  +G VD V+ DLGVSS
Sbjct: 74  VGIDRDPEAIALASARLARFGDRFVAVQATYDAVSRVAREHSVRAEGTVDAVLMDLGVSS 133

Query: 116 MQIDCGDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAH 174
           +Q+D   RGFS+ +  PLDMRM   SG++A D++  A+  +LTRIL   GEE+ ASRIA 
Sbjct: 134 LQLDEASRGFSYARPAPLDMRMDQGSGMTAQDLLEHADAAELTRILRTYGEERFASRIAA 193

Query: 175 AIVKRRQSA-PFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGL 232
           AIV+RR+S  P  +TQDL+ L++++V   ++ +  HPA R+FQALRI VN E++ L + +
Sbjct: 194 AIVRRRESGDPVASTQDLAELVRQSVPAPARRSGGHPAKRTFQALRIAVNAELDVLERAV 253

Query: 233 RSAEKALKAGGLLIVVSFHSLEDRLVKKFFA----SRSGKVMAVRHMIPSNAHPAVFQSI 288
             A  +L+ GG L+V S+ SLEDR+VK+  A    SR+ + + V   +P    P   + +
Sbjct: 254 PRALNSLRVGGRLVVESYQSLEDRIVKRALAHGATSRAPQDLPV---VPEVDRP-YLELL 309

Query: 289 TKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           T         ++  N RS   +LRA +R
Sbjct: 310 TNGAEKADARELDHNPRSAPVRLRAAVR 337


>gi|322513875|ref|ZP_08066954.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Actinobacillus ureae ATCC 25976]
 gi|322120274|gb|EFX92221.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Actinobacillus ureae ATCC 25976]
          Length = 313

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 121/313 (38%), Positives = 178/313 (56%), Gaps = 18/313 (5%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPF 69
           ++ T   H+ VLL + +  L   P  + +D TFG GG+SR      S    +IA DRDP 
Sbjct: 1   MNDTAHKHITVLLHEAVDGLAIKPNGIYIDGTFGRGGHSRLILSKLSERGRLIATDRDPS 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGF 125
           A++    T+ D +  F +    FS + +     G    +DG++ DLGVSS Q+D  +RGF
Sbjct: 61  AIAEAN-TITDAR--FQIVHTAFSAIPEVCEQLGLTGKIDGILLDLGVSSPQLDDAERGF 117

Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF + G LDMRM  + G+SA++ + Q +V DL  +L   GEE+ A RIA A+    +S  
Sbjct: 118 SFMRDGSLDMRMDTTKGLSAAEWLAQVSVDDLAWVLKTFGEERFAKRIAQAVFSYNKSTT 177

Query: 185 --FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
                T  L+ +I   V F K+   HPATRSFQA+RIF+N+E++EL + L+SA   L   
Sbjct: 178 DKISRTLQLAQIIADAVPF-KDKHKHPATRSFQAIRIFINSELDELEKALQSALSVLAPE 236

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP---SNAHPAVFQSITKKVVVPTQED 299
           G L ++SFHSLEDR+VK+F   ++ K M V   +P   S  +  +      K ++P++ +
Sbjct: 237 GRLSIISFHSLEDRMVKQFM-KKNSKGMDVPKGLPILESELNKNIPLKTIGKAIMPSEAE 295

Query: 300 VAFNRRSRSAKLR 312
           +  N RSRSA LR
Sbjct: 296 IEANPRSRSAVLR 308


>gi|317012519|gb|ADU83127.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori Lithuania75]
          Length = 308

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 121/304 (39%), Positives = 182/304 (59%), Gaps = 20/304 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVSCGQET 77
           H  VLL++V+    P    V++D T G GG+S++    K    +I +D+D FA    +E 
Sbjct: 8   HQSVLLQEVLQAFTPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFAQKIAKER 67

Query: 78  MRDYKEQFSLFQATFSQ-----LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           ++ ++ +++L    F++     L+ +  +K + GV+ DLGVSS+Q+D  +RGF+F  S  
Sbjct: 68  LKAFEGRYNLLSGGFAKRFKEALETH--NKEIKGVLVDLGVSSLQLDDDNRGFNFH-SHT 124

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM   S ++A  V+N  +V  L +I    GE K+  +IAH I +RR   PF+  +DL
Sbjct: 125 LDMRMDLESDLNAQKVINSYSVVALEKIFRDYGEIKEYKKIAHKIAERRAKKPFKDAKDL 184

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           S  +     FSKN +IHPAT  FQA+RI VN+E+EEL + L+ A + LK G +L V+SFH
Sbjct: 185 SDFLSS---FSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCA-RNLK-GAILCVISFH 239

Query: 252 SLEDRLVKKFFASRSGKVM---AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SLED LVK  F   +   +   +      SN H A+ + +TKK + P+ E++  NRRSRS
Sbjct: 240 SLEDALVKNAFKDYAKNCICDPSSFKCACSNNH-ALGEILTKKPITPSPEEIKNNRRSRS 298

Query: 309 AKLR 312
           AK+R
Sbjct: 299 AKMR 302


>gi|228998700|ref|ZP_04158287.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           mycoides Rock3-17]
 gi|229006202|ref|ZP_04163888.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           mycoides Rock1-4]
 gi|228755043|gb|EEM04402.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           mycoides Rock1-4]
 gi|228761168|gb|EEM10127.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           mycoides Rock3-17]
          Length = 317

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 115/307 (37%), Positives = 176/307 (57%), Gaps = 11/307 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72
           T+  HV VLL++ +  L+  PG   +D T G GG+S         G  +IA D+D  A+ 
Sbjct: 7   TMFKHVTVLLKETVDGLDIKPGGTYVDCTLGGGGHSSYLLSQLTEGGKLIAFDQDEIAIQ 66

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK 129
             +E    Y +QF   ++ F  L + + + G   VDG++FDLGVSS Q+D  +RGFS+  
Sbjct: 67  NAKERFSSYGDQFITVKSNFRYLSEKLHELGITEVDGILFDLGVSSPQLDTPERGFSYHH 126

Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM     ++A DVVN  + + L RI    GEEK + +I   I   R++   +TT
Sbjct: 127 DAPLDMRMDQDAPLTAYDVVNNWSYEQLVRIFFQYGEEKFSKQITRKIEAYRENKAIETT 186

Query: 189 QDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L  LI++ +   ++    HPA R FQA+RI VN+E++   + L SA + +K GG + V
Sbjct: 187 GELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRISV 246

Query: 248 VSFHSLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           ++FHSLEDR+ K  F   S + ++     +IP    P + + IT+K ++P+ E++  N R
Sbjct: 247 ITFHSLEDRICKTTFKRNSTTPQLPPGLPIIPDEFKPKL-KLITRKPILPSDEELEENNR 305

Query: 306 SRSAKLR 312
           +RSAKLR
Sbjct: 306 ARSAKLR 312


>gi|330888582|gb|EGH21243.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 313

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 120/307 (39%), Positives = 179/307 (58%), Gaps = 20/307 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H+ VLLE+ +  L        LD TFG GG+SR    ++G +  ++  D+DP A++ GQ 
Sbjct: 7   HITVLLEEAVEALAVRADGCYLDGTFGRGGHSRLILSQLGPDGRLLGFDKDPQAIATGQ- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            +     +F + Q +F++L     ++G    V G++ DLGVSS Q+D  +RGFSF   GP
Sbjct: 66  ALAAEDGRFVIVQRSFAELGSEAQERGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDGP 125

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G+SA++ +  A  +++ R+    GEE+ A R+A+A+V RR+  PF+ T DL
Sbjct: 126 LDMRMDPTRGVSAAEFIATAPAEEIARVFKEYGEERFAKRMANAVVARREVQPFERTADL 185

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++ K    +     +PATR+FQ LRI VNNE+ +L  GL +A  AL+ GG L+V+SFH
Sbjct: 186 AEVL-KVANPAWEKGKNPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLVVISFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA------FNRR 305
           SLEDR+V K F  +  K  A    +P N  P  F+    K+ +P +   A       N R
Sbjct: 245 SLEDRIV-KLFMRKLAKGEA--DNMPRNL-PIQFKPFEPKIKIPGKAQFASDTETKANPR 300

Query: 306 SRSAKLR 312
           SRSA +R
Sbjct: 301 SRSAVMR 307


>gi|325679058|ref|ZP_08158652.1| S-adenosyl-methyltransferase MraW [Ruminococcus albus 8]
 gi|324109182|gb|EGC03404.1| S-adenosyl-methyltransferase MraW [Ruminococcus albus 8]
          Length = 319

 Score =  191 bits (485), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 116/299 (38%), Positives = 166/299 (55%), Gaps = 8/299 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77
           HVPVLLE+ I  L+  P  +  D T G  G+S+   K      +I++DRDP AV+   E 
Sbjct: 5   HVPVLLEECIEGLDIKPDGIYCDGTAGGAGHSKEIAKRLTTGRLISVDRDPEAVAVATER 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +       ++ +  +S+L +        G DG++ DLGVSS Q+D  +RGFS+    PLD
Sbjct: 65  LAGLPA--TVVRGNYSELDEIFERLGLSGADGILMDLGVSSYQLDNAERGFSYHADAPLD 122

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRMS  G+SA DVVN  + K L RI+   GEEK +  IA  IV+ RQ  P +TT +L+ +
Sbjct: 123 MRMSSEGLSARDVVNGYDEKTLARIIFEYGEEKYSRSIARRIVEARQVRPIETTLELAEI 182

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           I+  V        +P  ++FQA+RI VN E+E L+  L  A   L  GG L +++FHSLE
Sbjct: 183 IKTGVPQKVRREKNPCKKTFQAIRIEVNAELEHLSVALDKAFDLLNVGGRLCIITFHSLE 242

Query: 255 DRLVK-KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           DRLVK +F     G V      +         + +T+K + PT+ +   N+R+ SAKLR
Sbjct: 243 DRLVKQRFRGFCQGCVCPPDFPVCVCGRTPRGRLVTRKPIEPTERENTENKRAHSAKLR 301


>gi|119478644|ref|ZP_01618547.1| S-adenosyl-methyltransferase [marine gamma proteobacterium
           HTCC2143]
 gi|119448421|gb|EAW29672.1| S-adenosyl-methyltransferase [marine gamma proteobacterium
           HTCC2143]
          Length = 291

 Score =  191 bits (485), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 113/296 (38%), Positives = 175/296 (59%), Gaps = 33/296 (11%)

Query: 36  PGKVILDATFGAGGYSRSFCK----MGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91
           P  V +D TFG GG+SR        MG +++ +D+DP A++ G E +    E+F +   +
Sbjct: 4   PAGVYVDGTFGRGGHSRRILTKLDAMG-HLLGIDKDPQAIATGNE-LAVIDERFEIVHGS 61

Query: 92  FSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDV 147
           F++  + +     +G+DGV+ DLGVSS Q+D   RGFSF + GPLDMRM+  +G+SA++ 
Sbjct: 62  FAETLELIRLRWPQGIDGVLLDLGVSSPQLDQSQRGFSFLRDGPLDMRMNTDAGMSAAEW 121

Query: 148 VNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRI 207
           V  A   ++ R+L   GEE+ A R+A AI+K R ++P +TT  L+ ++ +     +  + 
Sbjct: 122 VATATESEIARVLKEFGEERFAKRMARAIIKERMASPIETTLHLAKVVAEAHPAWERGK- 180

Query: 208 HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSG 267
           HPAT++FQA+RI++NNE+ +L Q L  A   L  GG L+V+SFHSLEDR+VK+F      
Sbjct: 181 HPATKAFQAIRIYINNELGDLRQFLDQALDVLNIGGRLVVISFHSLEDRMVKRF------ 234

Query: 268 KVMAVRH-----MIPSNAHPAVFQSITK------KVVVPTQEDVAFNRRSRSAKLR 312
               +RH      +P+N  P     + +      K V  + E++  N RSRSA +R
Sbjct: 235 ----IRHHVRGDQLPANL-PVTVDQLNRRLRQVGKAVKASAEEIDGNSRSRSAIMR 285


>gi|308185651|ref|YP_003929782.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Pantoea
           vagans C9-1]
 gi|308056161|gb|ADO08333.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Pantoea
           vagans C9-1]
          Length = 313

 Score =  191 bits (485), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 125/312 (40%), Positives = 182/312 (58%), Gaps = 21/312 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN     + +D TFG GG+SR    ++G    +IA+DRDP A++   E
Sbjct: 7   HTTVLLDEAVNGLNIREDGIYIDGTFGRGGHSRLILSQLGEKGRLIAIDRDPQAIAAAAE 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  +FS+    FS L +YV ++     +DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 67  IT---DPRFSIIHGPFSALAEYVAERDLVGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G SA++ +  A   D+  +L   GEE+ + RIA AIV+R +  P   T++L
Sbjct: 124 LDMRMDPSRGHSAAEWLLHAEEADIAFVLKTYGEERFSKRIARAIVERNREQPMTRTREL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + +I   +   K+   HPATRSFQA+RI++N+E+EE+   L+ A + L   G L V+SFH
Sbjct: 184 AEVISVAMPV-KDKFKHPATRSFQAIRIWINSELEEIDIALKGAVEVLAPQGRLSVISFH 242

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHP--AVFQSITKKV--VVPTQEDVAFNRR 305
           SLEDRLVK+F    SR  +V A    IP   H   A+     K +  + P   +V+ N R
Sbjct: 243 SLEDRLVKRFMRDQSRGPQVPA---GIPMTEHQLRALGGRELKLLGKMSPGDAEVSENPR 299

Query: 306 SRSAKLRAGMRT 317
           +RS+ LR   +T
Sbjct: 300 ARSSVLRIAEKT 311


>gi|145635580|ref|ZP_01791278.1| S-adenosyl-methyltransferase [Haemophilus influenzae PittAA]
 gi|229844915|ref|ZP_04465053.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae 6P18H1]
 gi|145267142|gb|EDK07148.1| S-adenosyl-methyltransferase [Haemophilus influenzae PittAA]
 gi|229812296|gb|EEP47987.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae 6P18H1]
          Length = 320

 Score =  191 bits (485), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 128/317 (40%), Positives = 178/317 (56%), Gaps = 29/317 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H+ VLL + +  L      + +D TFG GG+SR      SN  +IA+DRDP A++   E 
Sbjct: 12  HITVLLHEAVNGLALKENGIYIDGTFGRGGHSRFILSQLSNGRLIAVDRDPRAIA---EA 68

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            +    +F +   +FS + + + DK      +DG++ DLGVSS Q+D  +RGFSF K GP
Sbjct: 69  HKIQDSRFQIEHNSFSHIPE-ICDKLNLVGKIDGILLDLGVSSPQLDEAERGFSFMKDGP 127

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP------F 185
           LDMRM  + G+SA + + Q +++DLT +L   GEE+ A RIA AIV   +SA        
Sbjct: 128 LDMRMDTTQGLSAEEWLKQVSIEDLTWVLKTFGEERFAKRIATAIVDFNKSAVKNGTEFL 187

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
             T  L+ LI + V F K+   HPATRSFQA+RIF+N+E++EL   L SA   L   G L
Sbjct: 188 SRTSQLAELISQAVPF-KDKHKHPATRSFQAIRIFINSELDELESLLNSALDMLAPEGRL 246

Query: 246 IVVSFHSLEDRLVKKFFASRSG-----KVMAVRH-MIPSNAHPAVFQSITKKVVVPTQED 299
            ++SFHSLEDR+VK F   +S      K + +R   I  N        I  K + P+  +
Sbjct: 247 SIISFHSLEDRMVKHFMKKQSKGEDIPKGLPLREDQIQRNQK----LRIIGKAIQPSDAE 302

Query: 300 VAFNRRSRSAKLRAGMR 316
           +  N RSRSA LR   R
Sbjct: 303 IQANPRSRSAILRVAER 319


>gi|239618274|ref|YP_002941596.1| S-adenosyl-methyltransferase MraW [Kosmotoga olearia TBF 19.5.1]
 gi|263456220|sp|C5CGS3|RSMH_KOSOT RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|239507105|gb|ACR80592.1| S-adenosyl-methyltransferase MraW [Kosmotoga olearia TBF 19.5.1]
          Length = 298

 Score =  191 bits (485), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 120/308 (38%), Positives = 175/308 (56%), Gaps = 30/308 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H  V++++ +  L P    V +D T G GG++++  +  S    VI LD D   ++  ++
Sbjct: 9   HRSVMVQETLHYLRPTYNGVYVDGTLGEGGHTKAIIEATSGKCKVIGLDIDEEVLAIAEQ 68

Query: 77  TMRDYKEQFSLFQATFSQ----LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            ++++KE   LF  ++      L+    DK VDG + D+GVS+ Q+    RGFS++   P
Sbjct: 69  NLKEFKENVELFNVSYVDFDLVLESLAVDK-VDGFLLDIGVSTYQLKAKGRGFSYEIDEP 127

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQ-ASRIAHAIVKRRQSAPFQTTQD 190
           LDMRMS SG ++A+DVVN    K+L RI+   GEEK+ A RIA  IV+RR   P QTT  
Sbjct: 128 LDMRMSLSGSVTAADVVNSYPEKELARIIFEYGEEKRYARRIARKIVERR---PIQTTIQ 184

Query: 191 LSSLIQKTVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L   I+  +   +  R   H ATR+FQA+RI VN E++ L   L      LK GG ++++
Sbjct: 185 LVEAIKAALPPQERFRRKRHYATRTFQAIRIEVNGELKGLRTALEKFPNYLKPGGRIVII 244

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDR VK FF  + G  + +               +T+K VVP+ E+V+ N R+RS
Sbjct: 245 SFHSLEDRTVKHFFREQDGVTLKI---------------LTRKPVVPSVEEVSENPRARS 289

Query: 309 AKLRAGMR 316
           AKLRA  R
Sbjct: 290 AKLRAAER 297


>gi|217967641|ref|YP_002353147.1| S-adenosyl-methyltransferase MraW [Dictyoglomus turgidum DSM 6724]
 gi|263446377|sp|B8E088|RSMH_DICTD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|217336740|gb|ACK42533.1| S-adenosyl-methyltransferase MraW [Dictyoglomus turgidum DSM 6724]
          Length = 295

 Score =  191 bits (485), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 110/305 (36%), Positives = 174/305 (57%), Gaps = 27/305 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H PV+L++VI  L  +PGK+++DAT G GG+S    +       +I +DRD   ++  +E
Sbjct: 8   HKPVMLKEVIHYLKLSPGKIVVDATLGLGGHSSEILRELKGEGLLIGIDRDEEVLNLARE 67

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK-SGP 132
            +R     F LF  T+ ++Q+ + +     +D ++FDLG SS  I+  +RGFSF +   P
Sbjct: 68  RLRKIANNFVLFNTTYDKVQEILKELKLSFIDAILFDLGFSSFHIEKSERGFSFMRPEEP 127

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMR S  + ++A+D++N  N  +L+ +    GEE  + ++A  IV+RR+   F   +DL
Sbjct: 128 LDMRYSKDTTLTAADILNSFNELELSNLFWEYGEEPLSRKLAKKIVERRKEKKFVYVKDL 187

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             ++++ +   K  R H AT+ FQALRI VN+E+  L + L      L   G ++V+++H
Sbjct: 188 LEVVEEVI--PKRKR-HEATKVFQALRIVVNDEVNILKRALDQIPFILAPRGRIVVLTYH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           S+EDR+VK FF S S K+  V                 KKV+ P+  ++  NRR+RSAKL
Sbjct: 245 SIEDRVVKNFFKSHSDKIFPV----------------NKKVIRPSVNEIRENRRARSAKL 288

Query: 312 RAGMR 316
           R G R
Sbjct: 289 RVGER 293


>gi|299534665|ref|ZP_07047997.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Lysinibacillus fusiformis ZC1]
 gi|298730038|gb|EFI70581.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Lysinibacillus fusiformis ZC1]
          Length = 316

 Score =  191 bits (485), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 116/304 (38%), Positives = 174/304 (57%), Gaps = 11/304 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
           DH  VLL++ +  LN  P  V +D T G  G+S    +  S+   +I  D+D  A+   +
Sbjct: 3   DHTTVLLKETVDGLNIDPDGVYVDCTLGGAGHSEYLVQQLSDKGRLICFDQDMTAIENAK 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +  Y E+ +   + F  L++ +   G   VDG+++DLGVSS Q+D  +RGFS+    P
Sbjct: 63  IRLAPYIERVTFIHSNFRYLKEELLAHGIKQVDGILYDLGVSSPQLDTPERGFSYHHDAP 122

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM   + ++ASDVVNQ   +DL RI    GEEK + ++A  I + R+ AP +TT  L
Sbjct: 123 LDMRMDQTATLTASDVVNQWAYEDLVRIFFRYGEEKFSKQVARKIEEARKIAPIETTGQL 182

Query: 192 SSLIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             LI++ +  +   +  HPA R FQA+RI VN+E+      L  A   +  GG + V++F
Sbjct: 183 VELIKEGIPAAARRKGGHPAKRIFQAIRIAVNDELGAAEDSLVDAIDMINVGGRISVITF 242

Query: 251 HSLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           HSLEDRL K  F  AS   ++     +IP +  P   + IT+K ++P+ E++A N R+RS
Sbjct: 243 HSLEDRLCKTIFKEASSLPELPPNLPVIPDDMKPT-LKLITRKPIIPSDEELAVNNRARS 301

Query: 309 AKLR 312
           AKLR
Sbjct: 302 AKLR 305


>gi|323699047|ref|ZP_08110959.1| S-adenosyl-methyltransferase MraW [Desulfovibrio sp. ND132]
 gi|323458979|gb|EGB14844.1| S-adenosyl-methyltransferase MraW [Desulfovibrio desulfuricans
           ND132]
          Length = 326

 Score =  191 bits (485), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 120/309 (38%), Positives = 169/309 (54%), Gaps = 14/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VLL +V+  L P PG   +D T G GG+S +  +    G+ ++ LDRD  A++    
Sbjct: 12  HTTVLLHEVVRWLQPRPGGRYMDGTLGMGGHSLALLEAAGEGAELVGLDRDQEALALATR 71

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  +  +  LF   FS+ ++ + + G   +DG V DLGVSS+Q+D  DRGFSF   GPL
Sbjct: 72  RLEPFAGRVHLFHLPFSRFEEALDEVGWERIDGAVLDLGVSSLQLDEADRGFSFIHDGPL 131

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM   SG SA ++VN     +L RI+ + GE+  A +IA AIV+ R+      T  L+
Sbjct: 132 DMRMDPDSGPSAEELVNTLKHGELARIIRVYGEDPLAGKIASAIVREREKGAITRTLQLA 191

Query: 193 SLIQKTVYFSK---NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            ++ +  Y  K     R HPATR+FQ LRI VN E EEL   L +    LK G  L ++S
Sbjct: 192 EIV-RLAYPPKMRHTARNHPATRTFQGLRIAVNRETEELEHYLATIVGRLKPGARLAIIS 250

Query: 250 FHSLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           FHSLEDR VK  F  A++  K    +        P + + +T+K V  +  +   N R+R
Sbjct: 251 FHSLEDRAVKHAFRDAAKGCKCPPHQLHCTCGGVPEM-KVLTRKPVAASDAERDANPRAR 309

Query: 308 SAKLRAGMR 316
           SAKLR   R
Sbjct: 310 SAKLRVAER 318


>gi|260220007|emb|CBA27114.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Curvibacter putative symbiont of Hydra magnipapillata]
          Length = 311

 Score =  191 bits (485), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 128/310 (41%), Positives = 171/310 (55%), Gaps = 21/310 (6%)

Query: 20  HVPVLLEKVIALL--------NPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDP 68
           H  VLL + +  L        + A     +DATFG GG+SRS          +IA DRDP
Sbjct: 7   HTTVLLNEAVDALFSDGGTPFDAASLATYVDATFGRGGHSRSILSRLDASGRLIAFDRDP 66

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
            AV+   +       +FS+    FS L   +P   V GV+ DLGVSS QID  +RGFSF+
Sbjct: 67  EAVA---QAALITDPRFSIRHEGFSNL-GVLPSGSVGGVLMDLGVSSPQIDSPERGFSFR 122

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQ 186
             GPLDMRM  + G S +  +  A +  +  ++   GEE+ A  IA AIV RRQ   P  
Sbjct: 123 FEGPLDMRMDTTRGESVAQWLETAEINQIAEVIREYGEERFAGSIAKAIVARRQERGPIS 182

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           TT +L+ L+  TV   +  + +PATR+FQA RIF+N E+EEL Q L ++ + L+ GG L 
Sbjct: 183 TTSELAQLVADTVKTREPGQ-NPATRTFQAFRIFINAELEELQQALDASLEVLQPGGRLA 241

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+SFHSLEDR+VK+F A  S +    R      A P V +      + P+ E+VA N RS
Sbjct: 242 VISFHSLEDRIVKQFIAKHSKEEYDRRAPF---AAPKVMKLKALGRIKPSAEEVAANPRS 298

Query: 307 RSAKLRAGMR 316
           RSA LR   R
Sbjct: 299 RSAILRVAQR 308


>gi|288939887|ref|YP_003442127.1| S-adenosyl-methyltransferase MraW [Allochromatium vinosum DSM 180]
 gi|288895259|gb|ADC61095.1| S-adenosyl-methyltransferase MraW [Allochromatium vinosum DSM 180]
          Length = 339

 Score =  191 bits (485), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 124/308 (40%), Positives = 178/308 (57%), Gaps = 16/308 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGS--NVIALDRDPFAVSCGQE 76
           H PVLLE+ ++ L      + +D TFG GG+SR+   ++G+   ++  DRDP AV+ G+ 
Sbjct: 35  HKPVLLEESVSALLVQSDGIYVDGTFGRGGHSRAILARLGAAGRLLGFDRDPEAVAVGR- 93

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVD----GVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            +     +FS+ Q +F+ +   + + GVD    G++ DLGVSS Q+D  +RGFSF   GP
Sbjct: 94  ALAAQDPRFSIHQGSFADIGRLLDEAGVDARLNGLLLDLGVSSPQLDTPERGFSFMAEGP 153

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM   SG SA+  + +A   ++  +L   GEE+ A+RIA AIV+ R   P +TT  L
Sbjct: 154 LDMRMDPDSGESAAQWLARAEQGEIATVLHEFGEERFANRIARAIVETRTQTPIRTTAQL 213

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + L+ + V   +  + HPATR+FQA+RI VN E+E L + L      L  GG L V+SFH
Sbjct: 214 AELVARAVPRREPGK-HPATRTFQAVRIQVNGELEALRRCLDQVCDRLAVGGRLAVISFH 272

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV---VVPTQEDVAFNRRSRS 308
           SLEDRLVK+F   R  K   +   +P+ A     Q   + V   V P+  + A N R+RS
Sbjct: 273 SLEDRLVKRFI-RREAKGPELPKGVPARA--VEVQGRLRPVGKSVRPSTAEEALNPRARS 329

Query: 309 AKLRAGMR 316
           A LR   R
Sbjct: 330 AILRVAER 337


>gi|224826070|ref|ZP_03699173.1| S-adenosyl-methyltransferase MraW [Lutiella nitroferrum 2002]
 gi|224601707|gb|EEG07887.1| S-adenosyl-methyltransferase MraW [Lutiella nitroferrum 2002]
          Length = 320

 Score =  191 bits (485), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 125/307 (40%), Positives = 178/307 (57%), Gaps = 12/307 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMG--SNVIALDRDPFAVSCGQE 76
           H+ VLL + +A L   P  V +D TFG GG+SR    ++G    ++A D+DP A++ G E
Sbjct: 8   HLTVLLSEAVAALAVRPDGVYVDCTFGRGGHSRLILSQLGPAGRLVAFDKDPEAIAAG-E 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +     +F+L    F  L   +   G   VDGV+ DLGVSS QID   RGFSF+   PL
Sbjct: 67  RLAAEDPRFTLVHEGFETLARELDRLGIARVDGVLMDLGVSSPQIDDARRGFSFRFDAPL 126

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  S G++A++ +  A  +D+  ++   GEE+ A +IA AIV +R+ AP +TT+ L+
Sbjct: 127 DMRMDTSRGLTAAEWLATAAEEDIREVIKTYGEERFARKIAAAIVAQRELAPLETTRQLA 186

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            L+ + V   +  +  PATR+FQA+RI++N E+EEL   L  A + L  GG L V+SFHS
Sbjct: 187 QLVGQNVRTREPGQ-DPATRTFQAIRIYINRELEELKAVLPQAAQRLAEGGRLAVISFHS 245

Query: 253 LEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           LEDR+VK F   AS   K+ +   M+ S   P        K V  + ++V  N RSRSA 
Sbjct: 246 LEDRIVKNFMRDASSDAKLPSW-VMVRSADLPEPPLRTVGKPVRASDDEVNGNPRSRSAI 304

Query: 311 LRAGMRT 317
           +R   RT
Sbjct: 305 MRIAERT 311


>gi|89256825|ref|YP_514187.1| S-adenosyl-methyltransferase MraW [Francisella tularensis subsp.
           holarctica LVS]
 gi|115315211|ref|YP_763934.1| S-adenosyl-methyltransferase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|167009864|ref|ZP_02274795.1| S-adenosyl-methyltransferase [Francisella tularensis subsp.
           holarctica FSC200]
 gi|169656696|ref|YP_001429056.2| S-adenosyl-methyltransferase MraW [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|254368107|ref|ZP_04984127.1| S-adenosyl-methyltransferase [Francisella tularensis subsp.
           holarctica 257]
 gi|254369709|ref|ZP_04985719.1| S-adenosyl-methyltransferase [Francisella tularensis subsp.
           holarctica FSC022]
 gi|290953521|ref|ZP_06558142.1| S-adenosyl-methyltransferase MraW [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295313213|ref|ZP_06803872.1| S-adenosyl-methyltransferase MraW [Francisella tularensis subsp.
           holarctica URFT1]
 gi|122324792|sp|Q0BKT7|RSMH_FRATO RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|122500397|sp|Q2A265|RSMH_FRATH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263447878|sp|A7NDP7|RSMH_FRATF RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|89144656|emb|CAJ79980.1| S-adenosyl-methyltransferase [Francisella tularensis subsp.
           holarctica LVS]
 gi|115130110|gb|ABI83297.1| S-adenosyl-methyltransferase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134253917|gb|EBA53011.1| S-adenosyl-methyltransferase [Francisella tularensis subsp.
           holarctica 257]
 gi|157122668|gb|EDO66797.1| S-adenosyl-methyltransferase [Francisella tularensis subsp.
           holarctica FSC022]
 gi|164551764|gb|ABU62100.2| S-adenosyl-methyltransferase MraW [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 305

 Score =  191 bits (485), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 121/307 (39%), Positives = 182/307 (59%), Gaps = 22/307 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77
           H  VLL++ I  LN  P  + +DATFG GG+S++         +IA D+D  A+S  +E 
Sbjct: 2   HYSVLLQESINDLNINPQGIYIDATFGRGGHSKAILNRLTTGRLIAFDKDLDAISYAREN 61

Query: 78  MRDYKEQFSLFQ---ATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
                 QFS F+   A+F+ + DY         +DG++ DLGVSS Q+D   RGFSF  +
Sbjct: 62  F-----QFSNFEIVHASFASIYDYCLQHSLLGKIDGIIMDLGVSSPQLDNAARGFSFTHN 116

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTT 188
           GPLDMRM  S GI+AS  + + +V DL+ I  + GEE+ A +IA  I    +Q+   +TT
Sbjct: 117 GPLDMRMDVSKGITASQALEELSVYDLSYIFKVYGEERFAKKIALRIKDYIQQNGSIRTT 176

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ LI+ T+   K  + +PATR FQALRI+VNNE+++L   L +    +K+GG +  +
Sbjct: 177 LELAELIRATI--GKKEKKNPATRCFQALRIYVNNELKDLEALLENILAVIKSGGRIAAI 234

Query: 249 SFHSLEDRLVKKFFASR---SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           SFHSLEDR+VK+ F++      ++  +  M+P ++     + ITKK     ++++  N R
Sbjct: 235 SFHSLEDRIVKQKFSALINPKQELNRITKMLPQDSSQIKLKWITKK-SKANEDELNQNVR 293

Query: 306 SRSAKLR 312
           SRSA LR
Sbjct: 294 SRSAILR 300


>gi|134102314|ref|YP_001107975.1| S-adenosyl-methyltransferase MraW [Saccharopolyspora erythraea NRRL
           2338]
 gi|291003724|ref|ZP_06561697.1| S-adenosyl-methyltransferase [Saccharopolyspora erythraea NRRL
           2338]
 gi|262826346|sp|A4FLX5|RSMH_SACEN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|133914937|emb|CAM05050.1| S-adenosyl-methyltransferase [Saccharopolyspora erythraea NRRL
           2338]
          Length = 330

 Score =  191 bits (485), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 122/310 (39%), Positives = 179/310 (57%), Gaps = 10/310 (3%)

Query: 20  HVPVLLEKVIALLNPAPGK---VILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCG 74
           HVPV++E+ + LL PA  K   V++DAT G GG+S +       +  + LDRDP A+   
Sbjct: 19  HVPVMMERTLELLAPALSKGPAVVVDATLGMGGHSEALLAAHPELTLVGLDRDPDALRLA 78

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            E +  + ++  L  A + +  + +       VDG +FDLGVSS+Q+D  DRGF++    
Sbjct: 79  GERLAPHSDRVHLVHAVYDEWAEALAGLSLSKVDGALFDLGVSSLQLDETDRGFAYAHDA 138

Query: 132 PLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM S +  +A+DV+N  +  +LTR+L   GEEK A+RIA AIV+ R  APF  +  
Sbjct: 139 PLDMRMDSGAPRTAADVLNTYSAGELTRVLREYGEEKFAARIAAAIVRERAKAPFDRSGR 198

Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  L+   V   S+    HPA R+FQALRI VN E+E L + L +A  +L  GG ++V+S
Sbjct: 199 LVELLYDAVPAASRRTGGHPAKRTFQALRIEVNAELEVLGRALPAALDSLAVGGRMVVMS 258

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           +HSLEDR+VK+ FA R+     V   +    H    + +T+   + +  + A N R+ S 
Sbjct: 259 YHSLEDRMVKRAFAERAKSKTPVDLPVELPGHGPEIRLLTRGAELASDAETAANPRAASV 318

Query: 310 KLRAGMRTVE 319
           +LRA  R  E
Sbjct: 319 RLRAAERIKE 328


>gi|330794884|ref|XP_003285506.1| hypothetical protein DICPUDRAFT_29501 [Dictyostelium purpureum]
 gi|325084509|gb|EGC37935.1| hypothetical protein DICPUDRAFT_29501 [Dictyostelium purpureum]
          Length = 372

 Score =  191 bits (485), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 114/321 (35%), Positives = 184/321 (57%), Gaps = 34/321 (10%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQE 76
           H PV +++V+ +L+P P  V +DATFG GG+SR     CK    VIA DRDP      ++
Sbjct: 60  HKPVFIKEVLEILDPKPNNVYIDATFGLGGHSRGILESCK-DCYVIAFDRDPNVFELTKD 118

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVD-----GVVFDLGVSSMQIDCGDRGFSFQKS- 130
               YK++     + FS ++  + D  ++     G++FD GVSS QID  +RGFSF+K  
Sbjct: 119 LRTQYKDRLITIGSRFSSMKSALKDHNLENLKISGILFDYGVSSYQIDTAERGFSFKKEL 178

Query: 131 -GPLDMRMS---CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ-SAPF 185
            GPLDMRM+    S +SA+D+VN  + ++L  I   LGEEK   +IAH I+++R      
Sbjct: 179 EGPLDMRMNNKNTSQLSAADIVNTFSEQELRDIFYHLGEEKHTRKIAHEILRKRAFGEKI 238

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           +TT  L  +++  + +   ++    +R F++LR++VN+E+ E+  GLR A+  L  G  L
Sbjct: 239 ETTSQLVKVVECCMPYPAASKT--ISRIFRSLRMYVNDELGEIKYGLREADDILSPGSPL 296

Query: 246 IVVSFHSLEDRLVKKFFASRSGKV--------MAVRHMIP-SNAHPAVFQSITKKVVVPT 296
           + +SFHS+EDR+VK++  +   K           +++ +P S+ H +         + P+
Sbjct: 297 LAISFHSMEDRIVKQYLNNNGLKSDYDTINNNNVIKYELPKSSKHTS--------PIFPS 348

Query: 297 QEDVAFNRRSRSAKLRAGMRT 317
            E++ +N RS+SA LR  +RT
Sbjct: 349 DEELEWNPRSKSAILRWAVRT 369


>gi|160895291|ref|ZP_02076062.1| hypothetical protein CLOL250_02850 [Clostridium sp. L2-50]
 gi|156862984|gb|EDO56415.1| hypothetical protein CLOL250_02850 [Clostridium sp. L2-50]
          Length = 314

 Score =  191 bits (485), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 109/302 (36%), Positives = 179/302 (59%), Gaps = 9/302 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ I  LN  P  V +D T G  G+SR   K +GS+  +I +D+D  A++  +E
Sbjct: 5   HTSVLLDETIENLNIKPNGVYMDGTLGGAGHSREIAKRLGSDGHLIGIDQDGEAIATAKE 64

Query: 77  TMRDYKEQFSLFQ---ATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + +Y ++ ++ +     F  + D +    VDG++ DLGVSS Q+D  DRGF+++   PL
Sbjct: 65  RLAEYGDRITVVRDNYQNFKSILDELNISQVDGILLDLGVSSYQLDNADRGFTYRVDAPL 124

Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM      +A D+VN    ++L  IL   GEE+ A  IA+ IVK R++   +TT++L+
Sbjct: 125 DMRMDDRQTKTAKDIVNGYTEQELFHILKEYGEERFAKSIAYHIVKYRENKEIETTEELN 184

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+ ++    +N + HP+ ++FQA+RI +N+E+E L   +      LK GG L +++FH
Sbjct: 185 DIIRGSIPAKVRNAQGHPSKQTFQAIRIELNHELEVLTNSIDGMIDCLKPGGRLCIITFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK  F       +   +  + +    +  + IT+K ++PT+E++  N RS+SAK
Sbjct: 245 SLEDRIVKNAFRKNENPCICPPNFPVCTCGRKSKGKVITRKPILPTEEEMEINSRSKSAK 304

Query: 311 LR 312
           LR
Sbjct: 305 LR 306


>gi|118782145|ref|XP_312082.3| AGAP002831-PA [Anopheles gambiae str. PEST]
 gi|116129429|gb|EAA07716.4| AGAP002831-PA [Anopheles gambiae str. PEST]
          Length = 384

 Score =  191 bits (485), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 126/339 (37%), Positives = 179/339 (52%), Gaps = 42/339 (12%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77
           H  V+  + +    P   +V +D TFGAGG++R+  +   GS V+ALDRDP A     E 
Sbjct: 44  HRAVMATETVKFFEPQRDQVFIDMTFGAGGHTRALLEAAPGSTVVALDRDPLAHRLACEM 103

Query: 78  MRDYKEQFSLFQATFSQLQDYVP-------DKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
              +  +       FS+L   +         +  DGV+FD G SSMQ D   RGFS    
Sbjct: 104 AAQFPGRIVPLLGRFSELPALLRTVEGLDRQRHFDGVLFDFGCSSMQFDEAARGFSISHD 163

Query: 131 GPLDMRMS---C-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP-F 185
           GPLDMRM    C   +SA++V+ +    DL RIL + GEEKQA +IA AIV  R +    
Sbjct: 164 GPLDMRMDRDRCPEQLSAAEVLARIQEPDLVRILKVYGEEKQAKKIARAIVNARFTVKRI 223

Query: 186 QTTQDLSSLI------------QKTVYFSKNNR---IHPATRSFQALRIFVNNEIEELAQ 230
           +TT +L++++            Q T  F ++      H AT++FQALRIFVNNE+ E+  
Sbjct: 224 ETTAELANIVAHCLSQGESAGGQGTYDFRQDKLRRPAHVATKTFQALRIFVNNELNEINY 283

Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV------ 284
           G+  A+  L+ GG L+ ++FHSLED +VK+         +A R  +   +H         
Sbjct: 284 GMVLAKHLLRTGGKLVTIAFHSLEDTIVKRHLTGHVVDDVASRVPLQYVSHTLAHETEAM 343

Query: 285 -------FQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
                  ++ + K V+VPT E+VA N RSRSAKLRA +R
Sbjct: 344 QEMMKPHWKQMHKHVMVPTDEEVADNPRSRSAKLRAAVR 382


>gi|325676969|ref|ZP_08156641.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Rhodococcus equi ATCC 33707]
 gi|325552269|gb|EGD21959.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Rhodococcus equi ATCC 33707]
          Length = 334

 Score =  191 bits (485), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 116/326 (35%), Positives = 180/326 (55%), Gaps = 30/326 (9%)

Query: 20  HVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPF 69
           HVPVLL +   LL PA         G V++DAT G GG+S  F +   G ++I LDRDP 
Sbjct: 15  HVPVLLNRADDLLGPAITADNPRGDGAVMIDATLGLGGHSEYFLRTYPGLHLIGLDRDPE 74

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD------GVVFDLGVSSMQIDCGDR 123
           A+    + +  Y ++ +     +  + + +   G+D       ++FDLGVSSMQ+D  DR
Sbjct: 75  ALRIASDRLAPYADRTTFVHTRYDGIVEALGQAGLDPVGSVHAILFDLGVSSMQLDEADR 134

Query: 124 GFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GF++    PLDMRM+  +GI+A++V+N  +  +L RIL   GEE+ A RIA  IV+RRQ 
Sbjct: 135 GFAYSIDAPLDMRMNPTTGITAAEVLNTYSHGELARILSTYGEERFAGRIASEIVRRRQK 194

Query: 183 APFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            PF T+  L  L+  T+   ++    HPA R+FQALR+ VN E++ L   + +   AL  
Sbjct: 195 QPFTTSAALVELLYDTIPAATRRTGGHPAKRTFQALRVEVNGELDSLRDAIPAGLDALAV 254

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRS------GKVMAVRHMIPSNAHPAVFQSITKKVVVP 295
           GG ++ +S+ SLEDR+VK+  A R+      G  + +  M P       F+ +T+     
Sbjct: 255 GGRVVFMSYQSLEDRVVKQELAPRAKSKTPEGLPVELPGMGPE------FKILTRGAERA 308

Query: 296 TQEDVAFNRRSRSAKLRAGMRTVERS 321
           ++ ++  N R+   +LRA  R   ++
Sbjct: 309 SEAEIEDNPRAAPVRLRAAERIARKA 334


>gi|241765142|ref|ZP_04763130.1| S-adenosyl-methyltransferase MraW [Acidovorax delafieldii 2AN]
 gi|241365221|gb|EER60068.1| S-adenosyl-methyltransferase MraW [Acidovorax delafieldii 2AN]
          Length = 309

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 119/282 (42%), Positives = 167/282 (59%), Gaps = 13/282 (4%)

Query: 41  LDATFGAGGYSRS-FCKMG--SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD 97
           +DATFG GG+SR    ++G   +++A D+DP A+    E  R    +FS+    F  L +
Sbjct: 32  VDATFGRGGHSRRILLRLGPQGHLVAFDKDPEAI---HEATRITDARFSIRHEGFRHLAE 88

Query: 98  YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDL 156
            +P   V GV+ DLGVSS QID   RGFSF+  GPLDMRM  + G S +  +  A V+ +
Sbjct: 89  -LPAGSVAGVLMDLGVSSPQIDSPGRGFSFRFDGPLDMRMDTTRGESVAQWLATAEVQQI 147

Query: 157 TRILGILGEEKQASRIAHAIVKRRQS-APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQ 215
             ++   GEE+ A  IA AIV RR+   P  TT +L+ L+   V   +  + +PATR+FQ
Sbjct: 148 AEVIRDYGEERFAGPIAKAIVARREERGPLATTAELADLVAGAVKTREPGQ-NPATRTFQ 206

Query: 216 ALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM 275
           ALRIF+N E+EEL Q L ++   L+ GG L+V+SFHSLEDR+VK+F A  S +V   R  
Sbjct: 207 ALRIFINAELEELQQALEASLSVLQPGGRLVVISFHSLEDRIVKQFIAQHSKEVYDRRAP 266

Query: 276 IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
               A P V + +    + P+  +VA N R+RSA +R   RT
Sbjct: 267 F---APPKVMKLVALDRIKPSAAEVAANPRARSAIMRVAERT 305


>gi|210622330|ref|ZP_03293099.1| hypothetical protein CLOHIR_01047 [Clostridium hiranonis DSM 13275]
 gi|210154318|gb|EEA85324.1| hypothetical protein CLOHIR_01047 [Clostridium hiranonis DSM 13275]
          Length = 311

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 115/309 (37%), Positives = 173/309 (55%), Gaps = 13/309 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
           +HV VLL + I  LN  P  V +D T G  G+S+   K  S+    I  D+D  A++  +
Sbjct: 4   NHVSVLLNECIDNLNIKPDGVYVDCTMGGAGHSKEIVKRLSSDGLFIGFDQDKNAIATAK 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E + +Y ++     + F  +++ +   GV   DGV+ DLGVSS Q+D  DRGFS+ +  P
Sbjct: 64  ERLAEYSDRVKFVHSNFENIKEELEKIGVHKIDGVLADLGVSSHQLDEADRGFSYMQDAP 123

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM      SA +VVN+   ++L +I+   GE+  A RIA  IV+ R   P +TT +L
Sbjct: 124 LDMRMDVRKDFSAYNVVNEYTEEELAKIIKDYGEDNWAKRIAKFIVEGRAEKPIETTGEL 183

Query: 192 SSLIQKTVYFSKNNRI---HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             +I+K +   K  RI   HPA R+FQA+RI VNNE+  + + +  A   +  GG + ++
Sbjct: 184 VDIIKKAI--PKKARIDGPHPAKRTFQAIRIEVNNELGVITKMIDDACSIMNPGGRICII 241

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHP-AVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+VK  F   S   +    M        +  + IT+K ++P+ E++  N RSR
Sbjct: 242 TFHSLEDRIVKNEFKYLSLDCVCPPEMPFCQCDKVSEVKVITRKPILPSAEEIEMNPRSR 301

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 302 SAKLRVAEK 310


>gi|301155878|emb|CBW15347.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Haemophilus parainfluenzae T3T1]
          Length = 320

 Score =  191 bits (484), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 126/315 (40%), Positives = 176/315 (55%), Gaps = 20/315 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQ 75
           +H+ VLL + +  L      + +D TFG GG+SR   S       +IA+DRDP A++   
Sbjct: 9   EHITVLLHEAVNGLALKENGIYIDGTFGRGGHSRLILSQLSENGRLIAIDRDPRAIAEA- 67

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           E ++D +  F +   +FS + D          +DG++ DLGVSS Q+D  DRGFSF K G
Sbjct: 68  EKIQDPR--FHIEHNSFSHIPDICQKLDLVGKIDGILLDLGVSSPQLDEADRGFSFMKDG 125

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP------ 184
           PLDMRM  + G+SA++ + Q +V DLT +L   GEE+ A RIA AIV+  +SA       
Sbjct: 126 PLDMRMDTTQGLSAAEWLKQVSVDDLTWVLKTFGEERFAKRIATAIVEFNKSAVKNGTEC 185

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
              T  L+ LI + V F K+   HPATRSFQA+RI++N E++EL   L SA   L   G 
Sbjct: 186 LSRTSQLAELIAQAVPF-KDKHKHPATRSFQAIRIYINAELDELESVLNSALDMLAPEGR 244

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ--SITKKVVVPTQEDVAF 302
           L ++SFHSLEDR+VK F   +S      R +          Q   I  K + P++ +++ 
Sbjct: 245 LSIISFHSLEDRMVKHFMRKQSKGEDIPRGLPLREDQIQRNQKLKIIGKAIQPSEAEISA 304

Query: 303 NRRSRSAKLRAGMRT 317
           N RSRSA LR   R 
Sbjct: 305 NPRSRSAVLRIAERV 319


>gi|254372569|ref|ZP_04988058.1| S-adenosyl-methyltransferase [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570296|gb|EDN35950.1| S-adenosyl-methyltransferase [Francisella novicida GA99-3549]
          Length = 305

 Score =  191 bits (484), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 121/307 (39%), Positives = 181/307 (58%), Gaps = 22/307 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77
           H  VLL++ I  LN  P  + +DATFG GG+S++         +IA D+D  A+S  +E 
Sbjct: 2   HYSVLLQESINDLNINPQGIYIDATFGRGGHSKAILNRLTTGRLIAFDKDLDAISYAREN 61

Query: 78  MRDYKEQFSLFQ---ATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
                 QFS F+   A+F+ + DY         +DG++ DLGVSS Q+D   RGFSF  +
Sbjct: 62  F-----QFSNFEIVHASFASIYDYCLQHSLLGKIDGIIMDLGVSSPQLDNAARGFSFTHN 116

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTT 188
           GPLDMRM  S GI+AS  + + +V DL+ I  + GEE+ A +IA  I    +Q+    TT
Sbjct: 117 GPLDMRMDVSKGITASQALEELSVDDLSYIFKVYGEERFAKKIALRIKDYIQQNGSISTT 176

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ LI+ T+   K  + +PATR FQALRI+VNNE+++L   L +    +K+GG +  +
Sbjct: 177 LELAELIRATI--GKKEKKNPATRCFQALRIYVNNELKDLEALLENILAVIKSGGRIAAI 234

Query: 249 SFHSLEDRLVKKFFASR---SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           SFHSLEDR+VK+ F++      ++  +  M+P ++     + ITKK     ++++  N R
Sbjct: 235 SFHSLEDRIVKQKFSALINPKQELNRITKMLPQDSSQIKLKWITKK-SKANEDELNQNVR 293

Query: 306 SRSAKLR 312
           SRSA LR
Sbjct: 294 SRSAILR 300


>gi|116492952|ref|YP_804687.1| S-adenosyl-methyltransferase MraW [Pediococcus pentosaceus ATCC
           25745]
 gi|122265584|sp|Q03EX7|RSMH_PEDPA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|116103102|gb|ABJ68245.1| SAM-dependent methyltransferase for cell envelope biogenesis
           [Pediococcus pentosaceus ATCC 25745]
          Length = 314

 Score =  191 bits (484), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 113/305 (37%), Positives = 179/305 (58%), Gaps = 13/305 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLLE+ +  L+     + +D T G GG+SR    K+G N  + + D+D  A+   Q+
Sbjct: 6   HTTVLLEETVNGLDVKEDGIYVDCTLGGGGHSRLILSKLGENGHLYSFDQDQTAIDYNQK 65

Query: 77  TMRDY--KEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            + +Y  K Q +  ++ F  L++   ++   GVDGV++DLGVSS Q D   RGFS++   
Sbjct: 66  NLAEYVAKGQVTFVKSNFRNLKNELNHLGIDGVDGVLYDLGVSSPQFDDAGRGFSYRFDA 125

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM     ++A +VVN+ +  DL RI    GEEK + ++A  I   R+  P +TT +
Sbjct: 126 PLDMRMDQTQKLNAREVVNEWSYNDLVRIFFRYGEEKYSKQVARKIESTREEKPIETTGE 185

Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ LI+  +   ++    HPA + FQA+RI VN+E+  L + L  A + L   G + V++
Sbjct: 186 LADLIKSAIPAAARRTGGHPAKKIFQAIRIAVNDELGALEESLEQALQILNPAGRISVIT 245

Query: 250 FHSLEDRLVKKFFASRS--GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           F SLEDRLVK+ F  ++  G + A   +IP +  P  ++ I +K ++P+++++  NRRS 
Sbjct: 246 FQSLEDRLVKRMFKEQTEIGDLPAGLPIIPDDMKPK-YKLINRKPIIPSEDELEENRRSH 304

Query: 308 SAKLR 312
           SAKLR
Sbjct: 305 SAKLR 309


>gi|207092313|ref|ZP_03240100.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 308

 Score =  191 bits (484), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 121/304 (39%), Positives = 181/304 (59%), Gaps = 20/304 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVSCGQET 77
           H  VLL++V+    P    V++D T G GG+S++    K    +I +D+D FA    +E 
Sbjct: 8   HQSVLLQEVLQAFAPLEKGVLIDCTLGLGGHSKAILSQKPHLKLIGIDKDKFAQEIAKER 67

Query: 78  MRDYKEQFSLFQATFSQ-----LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           +++++ +++L    F++     L+ +  +K + GV+ DLGVSS+Q+D  +RGF+F  S  
Sbjct: 68  LKEFEGRYNLLSGGFAKRFKEALETH--NKEIKGVLVDLGVSSLQLDDDNRGFNFH-SHA 124

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM   S ++A  V+N   V  L +I    GE K+  +IAH I +RR   PF+  +DL
Sbjct: 125 LDMRMDLESELNAQKVINSYPVIALEKIFKDYGEIKEYKKIAHKIAERRAKKPFKDAKDL 184

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           S  +     FSKN +IHPAT  FQA+RI VN+E+EEL + L+ A + LK G +L V+SFH
Sbjct: 185 SEFLSS---FSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCA-RNLK-GAILCVISFH 239

Query: 252 SLEDRLVKKFFASRSGKVMA---VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SLED LVK  F   +   +          SN H A+ + +TKK + P+ E++  NRRSRS
Sbjct: 240 SLEDVLVKNAFKDYAKNCICDPLSFKCACSNNH-ALGEILTKKPITPSPEEIKNNRRSRS 298

Query: 309 AKLR 312
           AK+R
Sbjct: 299 AKMR 302


>gi|263447893|sp|A1R5F0|RSMH_ARTAT RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 332

 Score =  191 bits (484), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 121/318 (38%), Positives = 181/318 (56%), Gaps = 19/318 (5%)

Query: 20  HVPVLLEKVIALLNPAPG----------KVILDATFGAGGYSRSFCKMGSNV--IALDRD 67
           HVPVL ++ I LL  APG           V +DAT G GG+S +  +   ++  + +DRD
Sbjct: 14  HVPVLKDRCINLL--APGFEAARKRGERPVAIDATLGMGGHSEAMLQRFPDLHLVGIDRD 71

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRG 124
             A++     +  + ++  L  A + +++D + D GV    G++ DLGVSS+Q+D  +RG
Sbjct: 72  EEALALAGARLEPFSDRTDLVHAVYDEIEDVLLDLGVPEVHGILMDLGVSSLQLDERERG 131

Query: 125 FSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           F++    PLDMRM  S G +A+DVVN  +  +L RI+   GEEK A RIA+ IV  R   
Sbjct: 132 FAYSYDAPLDMRMDTSRGQTAADVVNNYSEDELVRIIRKWGEEKFAGRIANRIVNARAEK 191

Query: 184 PFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           PF TT +L   I+  V   +  +  HPA R+FQALRI VN E++ L + + +A  A   G
Sbjct: 192 PFATTGELVEQIRSVVPAAAAKSGGHPAKRTFQALRIEVNEELDVLERAVPAAVAATAMG 251

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G ++V+S+HSLED++VK  F + S     +   +    H    ++ITK   VPT  ++A 
Sbjct: 252 GRIVVMSYHSLEDKIVKSVFQAGSKSSAPLGFPVELEEHKPELKTITKGTEVPTAAEIAE 311

Query: 303 NRRSRSAKLRAGMRTVER 320
           N R+ SA+LRA  R  +R
Sbjct: 312 NPRAASARLRAVERIKQR 329


>gi|301169870|emb|CBW29474.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Haemophilus influenzae 10810]
 gi|309973403|gb|ADO96604.1| 16S rRNA m(4)C1402 methyltranserfase [Haemophilus influenzae R2846]
          Length = 321

 Score =  191 bits (484), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 128/318 (40%), Positives = 182/318 (57%), Gaps = 30/318 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQE 76
           H+ VLL + +  L      + +D TFG GG+SR    ++ SN  +IA+DRDP A++   E
Sbjct: 12  HITVLLHEAVNGLALKENGIYIDGTFGRGGHSRFILSQLSSNGRLIAVDRDPRAIA---E 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
             +    +F +   +FS + + + DK      +DG++ DLGVSS Q+D  +RGFSF K G
Sbjct: 69  AHKIQDSRFQIEHNSFSHIPE-ICDKLNLVGKIDGILLDLGVSSPQLDEAERGFSFMKDG 127

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ- 189
           PLDMRM  + G+SA + + Q +++DLT +L   GEE+ A RIA AIV   +SA   +T+ 
Sbjct: 128 PLDMRMDTTQGLSAEEWLKQVSIEDLTWVLKTFGEERFAKRIATAIVDFNKSAVKNSTEF 187

Query: 190 -----DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
                 L+ LI + V F K+   HPATRSFQA+RIF+N+E++EL   L SA   L   G 
Sbjct: 188 LSRTSQLAELISQAVPF-KDKHKHPATRSFQAIRIFINSELDELESLLNSALDMLAPEGR 246

Query: 245 LIVVSFHSLEDRLVKKFFASRSG-----KVMAVRH-MIPSNAHPAVFQSITKKVVVPTQE 298
           L ++SFHSLEDR+VK F   +S      K + +R   I  N        I  K + P+  
Sbjct: 247 LSIISFHSLEDRMVKHFMKKQSKGEDIPKGLPLREDQIQRNQK----LRIIGKAIQPSDA 302

Query: 299 DVAFNRRSRSAKLRAGMR 316
           ++  N RSRSA LR   R
Sbjct: 303 EIQANPRSRSAILRVAER 320


>gi|332982167|ref|YP_004463608.1| S-adenosyl-methyltransferase MraW [Mahella australiensis 50-1 BON]
 gi|332699845|gb|AEE96786.1| S-adenosyl-methyltransferase MraW [Mahella australiensis 50-1 BON]
          Length = 312

 Score =  191 bits (484), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 120/311 (38%), Positives = 168/311 (54%), Gaps = 27/311 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H PVL+E+V+  ++   G + +D T G GG++   C+       +I +D+D  A++   E
Sbjct: 6   HKPVLVEEVMQYMSCRKGGIYIDGTIGGGGHALEICRRIDGDGLLIGIDKDDEALAHAAE 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           T+++Y     L +  F  ++  V       VDGV+ DLGVSS Q+D   RGFS+     L
Sbjct: 66  TLKEYSSCVRLIKGDFRYMKALVNGIEVNEVDGVLLDLGVSSHQLDDAGRGFSYNAEAVL 125

Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM    + +A DVVN  + K L  I+   GEE+ A RIA  IVK RQ  P +TT  L 
Sbjct: 126 DMRMDKQQLLTAKDVVNTYDEKRLYEIIKDYGEERWAKRIASFIVKERQRYPIETTGQLV 185

Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I++ +   ++    HPA R+FQA+RI VN+E+  + +GL  A   LK GG L V+SFH
Sbjct: 186 EVIKRAIPAAARREGPHPARRTFQAIRIEVNDELNSIKEGLIQAMDCLKPGGRLCVISFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHP----------AVFQSITKKVVVPTQEDVA 301
           SLEDRLVK  F          R   P    P           V   +TKK V+ T ++V 
Sbjct: 246 SLEDRLVKDTFR---------RWQNPCTCPPDTPLCVCGNKPVAAIVTKKPVIATPDEVE 296

Query: 302 FNRRSRSAKLR 312
            N R+RSAKLR
Sbjct: 297 SNPRARSAKLR 307


>gi|311029920|ref|ZP_07708010.1| S-adenosyl-methyltransferase MraW [Bacillus sp. m3-13]
          Length = 312

 Score =  191 bits (484), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 114/303 (37%), Positives = 175/303 (57%), Gaps = 11/303 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           HV VLL + +  LN       +D T G  G+S    K  S+   +IA D+D  A+   + 
Sbjct: 4   HVTVLLNEAVEGLNIKEDGTYVDCTLGGAGHSSEIVKQLSDKGRLIAFDQDDHALEHAKN 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + +Y ++    ++ F  L++ + ++G   VDGV+FDLGVSS Q+D  +RGFS+    PL
Sbjct: 64  VLHNYLDRVIFIKSNFKHLKEKLYEQGITKVDGVLFDLGVSSPQLDTPERGFSYHHEAPL 123

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM   S +SA DVVN+ + + L RI    GEEK + +IA  I + R+S P +TT +L 
Sbjct: 124 DMRMDMNSPLSAYDVVNEWSYEKLVRIFFQYGEEKFSKQIARKIEEYRKSKPIETTLELV 183

Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  +   ++    HPA R FQA+RI VN+E+      +  A   LK GG + V++FH
Sbjct: 184 EIIKDGIPAPARRTGGHPAKRVFQAIRIAVNDELGVFEDAIHQAIDVLKVGGRVSVITFH 243

Query: 252 SLEDRLVKKFFASRS--GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+ K  F  +S   ++     +IP    P + + IT+K ++P++E++  N R+RSA
Sbjct: 244 SLEDRMCKVAFKEKSQLPQLPPGLPIIPEEFQP-ILKLITRKPILPSEEELETNNRARSA 302

Query: 310 KLR 312
           KLR
Sbjct: 303 KLR 305


>gi|42783012|ref|NP_980259.1| S-adenosyl-methyltransferase MraW [Bacillus cereus ATCC 10987]
 gi|47565791|ref|ZP_00236830.1| S-adenosyl-methyltransferase MraW [Bacillus cereus G9241]
 gi|222097364|ref|YP_002531421.1| s-adenosyl-methyltransferase mraw [Bacillus cereus Q1]
 gi|228987063|ref|ZP_04147188.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|229157497|ref|ZP_04285574.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus ATCC 4342]
 gi|88911698|sp|P62468|RSMH_BACC1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263447274|sp|B9IVZ5|RSMH_BACCQ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|42738939|gb|AAS42867.1| S-adenosyl-methyltransferase MraW [Bacillus cereus ATCC 10987]
 gi|47557071|gb|EAL15400.1| S-adenosyl-methyltransferase MraW [Bacillus cereus G9241]
 gi|221241422|gb|ACM14132.1| S-adenosyl-methyltransferase MraW [Bacillus cereus Q1]
 gi|228625947|gb|EEK82697.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus ATCC 4342]
 gi|228772657|gb|EEM21098.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|324327818|gb|ADY23078.1| 16S rRNA m(4)C1402 methyltranserfase [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 310

 Score =  191 bits (484), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 115/304 (37%), Positives = 175/304 (57%), Gaps = 11/304 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
           +HV VLL++ +  L+  PG   +D T G GG+S         G  +IA D+D  A+   +
Sbjct: 3   NHVTVLLKETVDGLDIKPGGTYVDCTLGGGGHSSYLLSQLTEGGRLIAFDQDEIAIQNAK 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E    Y EQF   ++ F  L + + + G   VDG++FDLGVSS Q+D  +RGFS+    P
Sbjct: 63  EKFSSYGEQFITVKSNFRYLSEKLQELGITEVDGILFDLGVSSPQLDTPERGFSYHHDAP 122

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM     ++A DVVN  + + L RI    GEEK + +IA  I   R++   +TT +L
Sbjct: 123 LDMRMDQDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTGEL 182

Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             LI++ +   ++    HPA R FQA+RI VN+E++   + L SA + +K GG + V++F
Sbjct: 183 VELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRVSVITF 242

Query: 251 HSLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+ K  F   S + ++     +IP    P + + IT+K ++P+  ++  N R+RS
Sbjct: 243 HSLEDRICKTTFKRNSTTPQLPPGLPIIPDEFKPKL-KLITRKPILPSDIELEENNRARS 301

Query: 309 AKLR 312
           AKLR
Sbjct: 302 AKLR 305


>gi|302338060|ref|YP_003803266.1| S-adenosyl-methyltransferase MraW [Spirochaeta smaragdinae DSM
           11293]
 gi|301635245|gb|ADK80672.1| S-adenosyl-methyltransferase MraW [Spirochaeta smaragdinae DSM
           11293]
          Length = 320

 Score =  191 bits (484), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 122/314 (38%), Positives = 179/314 (57%), Gaps = 12/314 (3%)

Query: 20  HVPVLLEKVIALLNPAPGK-VILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76
           H  V+ E+    L+PA  K +++D T G GG+S  F     G  ++ LD D   +   ++
Sbjct: 10  HRSVMAEEAFHYLSPALEKGLLVDCTLGEGGHSELFLSRLPGCRIVGLDADEKILEVARQ 69

Query: 77  TMRDYKEQFSLFQATFSQL-QDY-VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
            +  + E+  LF   F+   +DY + D+  D V+FDLG+S    +   RGFSF++  PLD
Sbjct: 70  RLAPFGERVRLFNTWFNVFFRDYPLGDERPDAVLFDLGISVFHYERSGRGFSFREDEPLD 129

Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MR+      SA+D++N    K+L  ++   GEE+ + R A AIV RRQS PF TT++L  
Sbjct: 130 MRLEAHLEQSAADIINTYPEKELADLIFRFGEERLSRRFASAIVARRQSKPFTTTKELEE 189

Query: 194 LIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +I      S ++ RIHPATR+FQALRI VN E+  L   L  A   L+ GG++ V+SFHS
Sbjct: 190 VIWTASPQSYRHGRIHPATRTFQALRIAVNGELARLESALGDAFARLRPGGMMGVISFHS 249

Query: 253 LEDRLVKKFFAS-RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK FF   + G + +    I S+      + +TKK + PT+E+V  N  SRSAK 
Sbjct: 250 LEDRIVKHFFLDKKKGCISSSGAPIDSDRGVTAAEILTKKPLRPTEEEVRVNAPSRSAKF 309

Query: 312 RAGMRTVERSIEDD 325
               R V + I++D
Sbjct: 310 ----RVVRKLIDED 319


>gi|217034743|ref|ZP_03440143.1| hypothetical protein HP9810_898g11 [Helicobacter pylori 98-10]
 gi|216942736|gb|EEC22294.1| hypothetical protein HP9810_898g11 [Helicobacter pylori 98-10]
          Length = 324

 Score =  191 bits (484), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 121/304 (39%), Positives = 179/304 (58%), Gaps = 20/304 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVSCGQET 77
           H  VLL++V+    P    V++D T G GG+S++    K    +I +D+D FA    +E 
Sbjct: 24  HQSVLLQEVLQAFAPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFAQEIAKER 83

Query: 78  MRDYKEQFSLFQATFSQ-----LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           ++ ++ +++L    F++     L+ +  DK + GV+ DLGVSS+Q+D  +RGF+F  S  
Sbjct: 84  LKAFEGRYNLLSGGFAKRFKEALETH--DKEIKGVLVDLGVSSLQLDDDNRGFNFH-SHA 140

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+  G ++A  V+N   V  L +I    GE K+  +IAH I +RR   PF+  +DL
Sbjct: 141 LDMRMNLEGDLNAQKVINSYPVVALEKIFRDYGEIKEYKKIAHKIAERRAKKPFKDAKDL 200

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           S  +      SKN +IHPAT  FQA+RI VN E+EEL + L+ A + LK G +L V+SFH
Sbjct: 201 SDFLSS---LSKNKKIHPATLVFQAVRIEVNRELEELKEFLQCA-RNLK-GAILCVISFH 255

Query: 252 SLEDRLVKKFFASRSGKVMA---VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SLED LVK  F   +   +          SN H A+ + +TKK + P+ E++  NRRSRS
Sbjct: 256 SLEDSLVKNAFKDYAKNCICDPLSFKCTCSNNH-ALGEILTKKPITPSPEEIKNNRRSRS 314

Query: 309 AKLR 312
           AK+R
Sbjct: 315 AKMR 318


>gi|119961336|ref|YP_947462.1| S-adenosyl-methyltransferase MraW [Arthrobacter aurescens TC1]
 gi|119948195|gb|ABM07106.1| putative S-adenosyl-methyltransferase mraW [Arthrobacter aurescens
           TC1]
          Length = 378

 Score =  191 bits (484), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 121/318 (38%), Positives = 181/318 (56%), Gaps = 19/318 (5%)

Query: 20  HVPVLLEKVIALLNPAPG----------KVILDATFGAGGYSRSFCKMGSNV--IALDRD 67
           HVPVL ++ I LL  APG           V +DAT G GG+S +  +   ++  + +DRD
Sbjct: 60  HVPVLKDRCINLL--APGFEAARKRGERPVAIDATLGMGGHSEAMLQRFPDLHLVGIDRD 117

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRG 124
             A++     +  + ++  L  A + +++D + D GV    G++ DLGVSS+Q+D  +RG
Sbjct: 118 EEALALAGARLEPFSDRTDLVHAVYDEIEDVLLDLGVPEVHGILMDLGVSSLQLDERERG 177

Query: 125 FSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           F++    PLDMRM  S G +A+DVVN  +  +L RI+   GEEK A RIA+ IV  R   
Sbjct: 178 FAYSYDAPLDMRMDTSRGQTAADVVNNYSEDELVRIIRKWGEEKFAGRIANRIVNARAEK 237

Query: 184 PFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           PF TT +L   I+  V   +  +  HPA R+FQALRI VN E++ L + + +A  A   G
Sbjct: 238 PFATTGELVEQIRSVVPAAAAKSGGHPAKRTFQALRIEVNEELDVLERAVPAAVAATAMG 297

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G ++V+S+HSLED++VK  F + S     +   +    H    ++ITK   VPT  ++A 
Sbjct: 298 GRIVVMSYHSLEDKIVKSVFQAGSKSSAPLGFPVELEEHKPELKTITKGTEVPTAAEIAE 357

Query: 303 NRRSRSAKLRAGMRTVER 320
           N R+ SA+LRA  R  +R
Sbjct: 358 NPRAASARLRAVERIKQR 375


>gi|229031550|ref|ZP_04187550.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus AH1271]
 gi|228729839|gb|EEL80819.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus AH1271]
          Length = 310

 Score =  191 bits (484), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 115/303 (37%), Positives = 174/303 (57%), Gaps = 11/303 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HV VLL++ +  L+  PG   +D T G GG+S         G  +IA D+D  A+   +E
Sbjct: 4   HVTVLLKETVDGLDIKPGGTYVDCTLGGGGHSSYLLSQLTEGGKLIAFDQDEIAIQNAKE 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
               Y EQF   ++ F  L + + + G   VDG++FDLGVSS Q+D  +RGFS+    PL
Sbjct: 64  KFSSYGEQFITVKSNFRYLSEKLQELGITEVDGILFDLGVSSPQLDTPERGFSYHHDAPL 123

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     ++A DVVN  + + L RI    GEEK + +IA  I   R++   +TT +L 
Sbjct: 124 DMRMDQDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTAELV 183

Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            LI++ +   ++    HPA R FQA+RI VN+E++   + L SA + +K GG + V++FH
Sbjct: 184 ELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRVSVITFH 243

Query: 252 SLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+ K  F   S + ++     +IP    P + + IT+K ++P+  ++  N R+RSA
Sbjct: 244 SLEDRICKTTFKRNSTTPQLPQGLPIIPDEFKPKL-KLITRKPILPSDIELEENNRARSA 302

Query: 310 KLR 312
           KLR
Sbjct: 303 KLR 305


>gi|240168225|ref|ZP_04746884.1| S-adenosyl-methyltransferase MraW [Mycobacterium kansasii ATCC
           12478]
          Length = 330

 Score =  191 bits (484), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 113/314 (35%), Positives = 179/314 (57%), Gaps = 18/314 (5%)

Query: 21  VPVLLEKVIALLNPA-----P---GKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFA 70
           +PVL  + + LL PA     P   G +++DAT GAGG++  F +   G  +I LDRDP A
Sbjct: 1   MPVLARRCVELLAPALTRRHPDGFGAILVDATLGAGGHAERFLRELPGLRLIGLDRDPSA 60

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSSMQIDCGDRG 124
           +   ++ +  + E+ +L +  +  +   + + G      VDGV+FDLGVSSMQ+D  +RG
Sbjct: 61  LDIARDRLAPFAERITLIRTRYDGVASVLAELGYGAVESVDGVLFDLGVSSMQLDRAERG 120

Query: 125 FSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           F++ K  PLDMRM     ++A+D+VN  +   L  IL   GEE+ A RIA  IV++R   
Sbjct: 121 FAYAKDAPLDMRMDPDIPLTAADIVNSYDEAALADILRRYGEERFARRIAERIVRQRAHT 180

Query: 184 PFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           PF +T +L +++ + +   ++    HPA R+FQALRI VN+E++ L   + +A  AL+ G
Sbjct: 181 PFTSTSELVAVVYQAIPAAARRTGGHPAKRTFQALRIAVNDELDTLRGAVPAAMAALRVG 240

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G ++V+++ SLEDR+VK+ FA        +   +    H   F+S+T         ++  
Sbjct: 241 GRIVVMAYQSLEDRIVKRVFADAVASKTPIGLPVELPGHGPRFRSLTHGAERADAAEMER 300

Query: 303 NRRSRSAKLRAGMR 316
           N RS + +LRA  R
Sbjct: 301 NPRSAAVRLRALQR 314


>gi|90020487|ref|YP_526314.1| S-adenosyl-methyltransferase MraW [Saccharophagus degradans 2-40]
 gi|123277667|sp|Q21MH7|RSMH_SACD2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|89950087|gb|ABD80102.1| S-adenosyl-methyltransferase MraW [Saccharophagus degradans 2-40]
          Length = 312

 Score =  190 bits (483), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 113/308 (36%), Positives = 176/308 (57%), Gaps = 14/308 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMG--SNVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P    +D TFG GG+SR+   K+G    +  +D+DP AV+ G+ 
Sbjct: 6   HFSVLLQESVESLVVDPAGTYVDGTFGRGGHSRAILAKLGPEGKLFGIDKDPEAVAVGK- 64

Query: 77  TMRDYKEQFSLFQATFSQLQ-------DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
            +     +F +   +F+ L+       D+    G+ GV+ DLGVSS Q+D  +RGFSF  
Sbjct: 65  ALEAEDSRFRIVHGSFADLKHIDLLQADFAAG-GLSGVLVDLGVSSPQLDVAERGFSFMN 123

Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM+  +G++A++ +N A  +D+ ++L   GEE+ +  +A AIV+RR+  PF  T
Sbjct: 124 DGPLDMRMNTEAGMTAAEWINTAKQEDIAQVLWEYGEERFSRHMAKAIVERREIKPFTRT 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            D + +++      +  + HPATR+FQA+RIF+N E+E+L Q L  +   L  GG  +V+
Sbjct: 184 HDFAEVVKAANRKWEKGK-HPATRAFQAVRIFINRELEDLRQLLDDSVSVLAPGGRFVVI 242

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDR+VK+FF  +S      + +  +         I  K +     ++  N RSRS
Sbjct: 243 SFHSLEDRMVKRFFRDQSMGKQFPKGLPVTEEMKKQNLKIIGKALKAGDTELTQNIRSRS 302

Query: 309 AKLRAGMR 316
           A +R G R
Sbjct: 303 AVMRVGER 310


>gi|217032718|ref|ZP_03438203.1| hypothetical protein HPB128_201g21 [Helicobacter pylori B128]
 gi|298736407|ref|YP_003728933.1| S-adenosyl-methyltransferase [Helicobacter pylori B8]
 gi|216945592|gb|EEC24245.1| hypothetical protein HPB128_201g21 [Helicobacter pylori B128]
 gi|298355597|emb|CBI66469.1| S-adenosyl-methyltransferase [Helicobacter pylori B8]
          Length = 308

 Score =  190 bits (483), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 121/302 (40%), Positives = 180/302 (59%), Gaps = 16/302 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVSCGQET 77
           H  VLL++V+    P    V++D T G GG+S++    K    +I +D+D FA    +E 
Sbjct: 8   HQSVLLQEVLQAFTPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFAQEIAKER 67

Query: 78  MRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++ ++ +++L    F++  ++ +   G  + GV+ DLGVSS+Q+D  +RGF+F  S  LD
Sbjct: 68  LKAFEGRYNLLSGGFAKRFKEALEIHGERIKGVLVDLGVSSLQLDDDNRGFNFH-SHTLD 126

Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM   S ++A  V+N   V  L +I    GE K+  +IAH I +RR   PF+  +DLS 
Sbjct: 127 MRMDLESELNAQKVINSYPVVALEKIFRDYGEIKEYKKIAHKIAERRAKKPFRDAKDLSD 186

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
            +     FSKN +IHPAT  FQA+RI VNNE+EEL + L+ A + LK G +L V+SFHSL
Sbjct: 187 FLSS---FSKNKKIHPATLVFQAVRIEVNNELEELKEFLQCA-RNLK-GAILCVISFHSL 241

Query: 254 EDRLVKKFFASRSGKVMA---VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           ED LVK  F + +   +          SN H A+ + +TKK + P+ E++  NRRSRSAK
Sbjct: 242 EDALVKNAFKNYAKNCICDPLSFKCACSNNH-ALGEILTKKPITPSPEEIKNNRRSRSAK 300

Query: 311 LR 312
           +R
Sbjct: 301 MR 302


>gi|256827376|ref|YP_003151335.1| S-adenosyl-methyltransferase MraW [Cryptobacterium curtum DSM
           15641]
 gi|256583519|gb|ACU94653.1| S-adenosyl-methyltransferase MraW [Cryptobacterium curtum DSM
           15641]
          Length = 321

 Score =  190 bits (483), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 117/309 (37%), Positives = 176/309 (56%), Gaps = 18/309 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQE 76
           H+PVLL + +  L    G+  +DAT G  G+S    K       ++ +D+D  A++  + 
Sbjct: 10  HIPVLLTECLDYLRLETGRTYVDATLGGAGHSIEAAKHIQTAGTLVGIDQDEVALTAART 69

Query: 77  TM----RDYKEQFSLFQATFSQ-----LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
            +     D + +  L +  F       LQ  +P   VD  +FDLGVSS+QID   RGFSF
Sbjct: 70  RLLALPTDKRPELCLLRGNFGDMDELLLQADIP--SVDAFLFDLGVSSVQIDTPSRGFSF 127

Query: 128 QKSGPLDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           ++  PLDMRM    S ++A++++N  N  DL RI+    +E+ A+RIA  IV+ R  A  
Sbjct: 128 KEKAPLDMRMDPGKSTLTAAEIINTYNAADLARIIRTYSDERWATRIADFIVQARTHARI 187

Query: 186 QTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           +T+  L  +I+  +  S + +  HPA R+FQALRI VN+E++ L QGL +A + L  GG 
Sbjct: 188 ETSDQLVDIIKAAIPASARRSGGHPAKRTFQALRIEVNSELDVLQQGLEAAIRWLAPGGR 247

Query: 245 LIVVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
           L V+S+HSLEDR+VK+ F   S G        +    +  + + IT+K V+PT E++  N
Sbjct: 248 LAVISYHSLEDRIVKETFLRFSRGCTCPPDLPVCVCGNVPIIKVITRKPVLPTPEEIERN 307

Query: 304 RRSRSAKLR 312
            R+RSAKLR
Sbjct: 308 PRARSAKLR 316


>gi|118497204|ref|YP_898254.1| S-adenosylmethionine-dependent methyltransferase [Francisella
           tularensis subsp. novicida U112]
 gi|254374028|ref|ZP_04989510.1| S-adenosyl-methyltransferase [Francisella novicida GA99-3548]
 gi|263447525|sp|A0Q5I5|RSMH_FRATN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|118423110|gb|ABK89500.1| S-adenosylmethionine-dependent methyltransferase [Francisella
           novicida U112]
 gi|151571748|gb|EDN37402.1| S-adenosyl-methyltransferase [Francisella novicida GA99-3548]
 gi|328676676|gb|AEB27546.1| S-adenosyl-methyltransferase MraW [Francisella cf. novicida Fx1]
          Length = 305

 Score =  190 bits (483), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 121/307 (39%), Positives = 181/307 (58%), Gaps = 22/307 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77
           H  VLL++ I  LN  P  + +DATFG GG+S++         +IA D+D  A+S  +E 
Sbjct: 2   HYSVLLQESINDLNINPQGIYIDATFGRGGHSKAILNRLTTGRLIAFDKDLDAISYAREN 61

Query: 78  MRDYKEQFSLFQ---ATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
                 QFS F+   A+F+ + DY         +DG++ DLGVSS Q+D   RGFSF  +
Sbjct: 62  F-----QFSNFEIVHASFASIYDYCLQHSLLGKIDGIIMDLGVSSPQLDNAARGFSFTHN 116

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTT 188
           GPLDMRM  S GI+AS  + + +V DL+ I  + GEE+ A +IA  I    +Q+    TT
Sbjct: 117 GPLDMRMDVSKGITASQALEELSVDDLSYIFKVYGEERFARKIALRIKDYIQQNGSISTT 176

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ LI+ T+   K  + +PATR FQALRI+VNNE+++L   L +    +K+GG +  +
Sbjct: 177 LELAELIRATI--GKKEKKNPATRCFQALRIYVNNELKDLEALLENILAVIKSGGRIAAI 234

Query: 249 SFHSLEDRLVKKFFASR---SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           SFHSLEDR+VK+ F++      ++  +  M+P ++     + ITKK     ++++  N R
Sbjct: 235 SFHSLEDRIVKQKFSALINPKQELNRITKMLPQDSSQIKLKWITKK-SKANEDELNQNVR 293

Query: 306 SRSAKLR 312
           SRSA LR
Sbjct: 294 SRSAILR 300


>gi|54310311|ref|YP_131331.1| S-adenosyl-methyltransferase MraW [Photobacterium profundum SS9]
 gi|50402223|sp|P62475|RSMH_PHOPR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|46914752|emb|CAG21529.1| putative S-adenosylmethionine-dependent methyltransferaseinvolved
           in cell envelope biogenesis [Photobacterium profundum
           SS9]
          Length = 315

 Score =  190 bits (483), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 122/313 (38%), Positives = 185/313 (59%), Gaps = 19/313 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQ 75
           +H+ VLL + +  L   P  + +D TFG GG+SR     +G N  +  +DRDP A++  Q
Sbjct: 6   EHISVLLHESVDGLAIKPDGIYIDGTFGRGGHSRLILSHLGENGRLYGIDRDPQAIAEAQ 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            T+ D +  FS+    FS +  Y+ ++     VDGV+ DLGVSS Q+D  +RGFSF + G
Sbjct: 66  -TIDDPR--FSIIHGPFSGMAQYMEERDLIGRVDGVLLDLGVSSPQLDDAERGFSFMRDG 122

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---PFQT 187
           PLDMRM   SGISA++ + +A   D+  +L   GEE+ A RIA  IV+ R++    P   
Sbjct: 123 PLDMRMDPTSGISAAEWLAEAEADDIAWVLKEFGEERFAKRIARGIVEHRENPDKKPLTR 182

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T++L++LI     F   ++ HPATRSFQA+RI++N+E++E+   L  A K L   G L V
Sbjct: 183 TKELAALISDVSPFRDKHK-HPATRSFQAIRIYINSELDEIETALNGAVKVLAPQGRLSV 241

Query: 248 VSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITK---KVVVPTQEDVAFN 303
           +SFHSLEDR+VK+F    S G  +     +  +   A+  +  K   K + P+++++  N
Sbjct: 242 ISFHSLEDRMVKRFIRKNSKGPEVPAGFPLTEDQIKALGSADLKMASKAIKPSKDELGDN 301

Query: 304 RRSRSAKLRAGMR 316
           +R+RS+ LR   R
Sbjct: 302 KRARSSVLRLAER 314


>gi|171462979|ref|YP_001797092.1| S-adenosyl-methyltransferase MraW [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|262824846|sp|B1XT01|RSMH_POLNS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|171192517|gb|ACB43478.1| S-adenosyl-methyltransferase MraW [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 316

 Score =  190 bits (483), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 117/318 (36%), Positives = 193/318 (60%), Gaps = 29/318 (9%)

Query: 20  HVPVLL-EKVIALL--------NPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRD 67
           H PVLL E V AL+        N     +++D TFG GG++++  K     +++I+ D+D
Sbjct: 5   HRPVLLAEAVTALVGGPLIQNQNSENHILVIDGTFGRGGHTQALLKELNPSAHMISFDKD 64

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
             A++  Q+       +  +   +F+Q+  Y   + VDG++ DLG+SS Q+D   RGFSF
Sbjct: 65  LDAIAVAQKI---NDPRLKIVHDSFAQMDQYAEAESVDGILLDLGISSPQVDEAHRGFSF 121

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA-PF 185
           ++ GPLDMRM+   G++A++ + QA+++++T ++   GEE+ A +IA AIV +R+   P 
Sbjct: 122 RREGPLDMRMNTDHGLTAAEWLEQASLEEITHVIKTYGEERFAFQIARAIVAKREDGLPP 181

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           +TT  L+SL+   V   +  +  PATR+FQALRIF+N E+E+L  GL++A K LK G  L
Sbjct: 182 KTTTQLASLVSSVVRTREAGQ-DPATRTFQALRIFINRELEDLELGLKAAMKLLKPGARL 240

Query: 246 IVVSFHSLEDRLVKKFFASRSG----KVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDV 300
            V+SFHSLEDR+VK+F  + +     + + VR   +P +A     + I++  + P+  +V
Sbjct: 241 AVISFHSLEDRIVKQFMQAHAKVDVPRGLPVREKDLPQSA----LKIISR--LKPSDAEV 294

Query: 301 AFNRRSRSAKLRAGMRTV 318
           + N R+RSA +R   + +
Sbjct: 295 SENPRARSAIMRVAEKRI 312


>gi|90413032|ref|ZP_01221030.1| putative S-adenosylmethionine-dependent methyltransferaseinvolvedin
           cell envelope biogenesis [Photobacterium profundum 3TCK]
 gi|90326047|gb|EAS42486.1| putative S-adenosylmethionine-dependent methyltransferaseinvolvedin
           cell envelope biogenesis [Photobacterium profundum 3TCK]
          Length = 315

 Score =  190 bits (483), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 122/313 (38%), Positives = 185/313 (59%), Gaps = 19/313 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQ 75
           +H+ VLL + +  L   P  + +D TFG GG+SR     +G N  +  +DRDP A++  Q
Sbjct: 6   EHISVLLHESVDGLAIKPDGIYIDGTFGRGGHSRLILSHLGENGRLYGIDRDPQAIAEAQ 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            ++ D +  FS+    FS +  Y+ ++     VDGV+ DLGVSS Q+D  +RGFSF + G
Sbjct: 66  -SIDDPR--FSIIHGPFSGMAQYMEERDLIGRVDGVLLDLGVSSPQLDDAERGFSFMRDG 122

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS---APFQT 187
           PLDMRM   SGISA++ + +A   D+  +L   GEE+ A RIA  IV+ R++   AP   
Sbjct: 123 PLDMRMDPTSGISAAEWLAEAEADDIAWVLKEFGEERFAKRIARGIVEHRENPDKAPLTR 182

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T +L++LI     F   ++ HPATRSFQA+RI++N+E++E+   L  A K L   G L V
Sbjct: 183 TTELAALISNVSPFRDKHK-HPATRSFQAIRIYINSELDEIETALNGAVKVLAPQGRLSV 241

Query: 248 VSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITK---KVVVPTQEDVAFN 303
           +SFHSLEDR+VK+F    S G  +     +  +   A+  +  K   K + P+++++  N
Sbjct: 242 ISFHSLEDRMVKRFIRKNSKGPEVPAGFPLTEDQIKALGSADLKMASKAIKPSKDELGDN 301

Query: 304 RRSRSAKLRAGMR 316
           +R+RS+ LR   R
Sbjct: 302 KRARSSVLRLAER 314


>gi|148657877|ref|YP_001278082.1| S-adenosyl-methyltransferase MraW [Roseiflexus sp. RS-1]
 gi|262826166|sp|A5UZS9|RSMH_ROSS1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|148569987|gb|ABQ92132.1| S-adenosyl-methyltransferase MraW [Roseiflexus sp. RS-1]
          Length = 313

 Score =  190 bits (483), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 114/304 (37%), Positives = 170/304 (55%), Gaps = 22/304 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H PVLL +V+A L P PG   +D T G GG++ +  +  S    ++ +D DP A++    
Sbjct: 23  HTPVLLAEVVAGLLPRPGGRYIDGTVGGGGHAAAILEASSPDGRLLGIDCDPAALAAAAA 82

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  Y ++ +L + +F ++       G   V+GVV DLGVSS Q+D  +RGFSFQ   PL
Sbjct: 83  RLAPYGDRVTLVRGSFREIGQLAATSGFVQVEGVVLDLGVSSYQLDTPERGFSFQAHAPL 142

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMR+     ++A+ +VN    ++L  ++   GEE+ + RIA AIV+ RQ  P  TT +L+
Sbjct: 143 DMRLDPDAPVTAAHLVNNLPEQELADLIFRYGEERGSRRIARAIVEARQRKPVTTTDELA 202

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +++ + +   +  RIHPATR+FQALRI VNNE+  L   L      L  GG + +++FHS
Sbjct: 203 AIVTRALG-GQRGRIHPATRTFQALRIAVNNELASLEAALPQIIDLLAPGGRMAIIAFHS 261

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK              H + + A       IT+K V  + E+   N RSRSA+LR
Sbjct: 262 LEDRIVK--------------HTLRAEAQAGRLHIITRKPVEASIEEQRANPRSRSARLR 307

Query: 313 AGMR 316
              R
Sbjct: 308 VAER 311


>gi|206976726|ref|ZP_03237630.1| S-adenosyl-methyltransferase MraW [Bacillus cereus H3081.97]
 gi|217961340|ref|YP_002339908.1| S-adenosyl-methyltransferase MraW [Bacillus cereus AH187]
 gi|229140568|ref|ZP_04269123.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus BDRD-ST26]
 gi|229198030|ref|ZP_04324744.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus m1293]
 gi|263447288|sp|B7HM39|RSMH_BACC7 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|206745036|gb|EDZ56439.1| S-adenosyl-methyltransferase MraW [Bacillus cereus H3081.97]
 gi|217067703|gb|ACJ81953.1| S-adenosyl-methyltransferase MraW [Bacillus cereus AH187]
 gi|228585509|gb|EEK43613.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus m1293]
 gi|228643129|gb|EEK99405.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus BDRD-ST26]
          Length = 310

 Score =  190 bits (483), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 115/304 (37%), Positives = 175/304 (57%), Gaps = 11/304 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
           +HV VLL++ +  L+  PG   +D T G GG+S         G  +IA D+D  A+   +
Sbjct: 3   NHVTVLLKETVDGLDIKPGGTYVDCTLGGGGHSSYLLSQLTEGGRLIAFDQDEIAIQNAK 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E    Y EQF   ++ F  L + + + G   VDG++FDLGVSS Q+D  +RGFS+    P
Sbjct: 63  EKFSSYGEQFITVRSNFRYLSEKLQELGITEVDGILFDLGVSSPQLDTPERGFSYHHDAP 122

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM     ++A DVVN  + + L RI    GEEK + +IA  I   R++   +TT +L
Sbjct: 123 LDMRMDQDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTGEL 182

Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             LI++ +   ++    HPA R FQA+RI VN+E++   + L SA + +K GG + V++F
Sbjct: 183 VELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRVSVITF 242

Query: 251 HSLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+ K  F   S + ++     +IP    P + + IT+K ++P+  ++  N R+RS
Sbjct: 243 HSLEDRICKTTFKRNSTTPQLPPGLPIIPDEFKPKL-KLITRKPILPSDIELEENNRARS 301

Query: 309 AKLR 312
           AKLR
Sbjct: 302 AKLR 305


>gi|227499845|ref|ZP_03929938.1| S-adenosylmethionine-dependent methyltransferase involved in cell
           envelope biogenesis [Anaerococcus tetradius ATCC 35098]
 gi|227217954|gb|EEI83227.1| S-adenosylmethionine-dependent methyltransferase involved in cell
           envelope biogenesis [Anaerococcus tetradius ATCC 35098]
          Length = 309

 Score =  190 bits (483), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 113/311 (36%), Positives = 173/311 (55%), Gaps = 22/311 (7%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
           +H+PVL    I  LN     V +D T G GG+S+   +  S+   +IA+D+D  A+   +
Sbjct: 7   EHIPVLATDTIKNLNIKKDGVYVDLTLGKGGHSKMILENLSDKGRLIAIDQDKEAIEAAK 66

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E ++D+    +   + F + ++ + + G   +DG + D+GVSS QID  +RGFS+ K GP
Sbjct: 67  ENLKDFS-NVTFINSNFEKFEEVLANLGLDLIDGALMDIGVSSYQIDNAERGFSYMKDGP 125

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+    ++A  VVN+ +  +L RI    GEE+ +  +A  I+K+R      +T  L
Sbjct: 126 LDMRMNQDNELTAEIVVNEYSQDELERIFFEYGEERFSKSVARNIIKQRSEGRIDSTIKL 185

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             +I+K++   K+N  HP  R FQALRI VN E+E L   + +    LK GG + ++SFH
Sbjct: 186 RDIIRKSI---KSNETHPEKRVFQALRIEVNRELEVLENTIETVVDHLKVGGRIAIISFH 242

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSN------AHPAVFQSITKKVVVPTQEDVAFNRR 305
           SLEDR+VK  F     K +A   + P         H A  + IT+K +  T +++  N R
Sbjct: 243 SLEDRIVKNKF-----KDLATSCICPPELPVCVCNHKAKIKVITRKPITATMKELKMNSR 297

Query: 306 SRSAKLRAGMR 316
           S+ AKLR G R
Sbjct: 298 SKPAKLRVGER 308


>gi|325001098|ref|ZP_08122210.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudonocardia sp. P1]
          Length = 337

 Score =  190 bits (483), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 114/308 (37%), Positives = 171/308 (55%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGK---VILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           H PVLLE+V ALL PA      V +DAT G GG++ +         V+ LDRDP A+   
Sbjct: 16  HTPVLLERVSALLAPAIADRPAVYVDATLGMGGHAAALLATHPQLTVVGLDRDPQALDLA 75

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
              +  Y ++     A + ++ + + + GV   D ++FDLGVSS+Q+D  +RGFS+ +  
Sbjct: 76  GRRLTAYADRLRPVHAVYDRIGEALDETGVGPADAILFDLGVSSLQLDEVERGFSYSRDA 135

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM   +G +A+DV+N      L RIL   GEE+ A  IA+AIV+ R   PF  + +
Sbjct: 136 DLDMRMDPTTGPTAADVLNTYTAPQLRRILREYGEERFAGPIANAIVRNRDKRPFTRSAE 195

Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  L+   V   S+    HPA R+FQALRI VN E++ L   L +A  AL  GG ++V++
Sbjct: 196 LVELLYGVVPAASRRTGGHPAKRTFQALRIEVNAELDVLRDALPAAFDALAPGGRIVVLA 255

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           +HSLEDR+ K+  A R+     +   +    H   F+ +T+     + +++  N R+   
Sbjct: 256 YHSLEDRITKRALAERTRSRTPLDLPVELPGHEPEFRLLTRGAETASDDEIERNPRAAPV 315

Query: 310 KLRAGMRT 317
           +LRA  RT
Sbjct: 316 RLRAAERT 323


>gi|332673556|gb|AEE70373.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori 83]
          Length = 308

 Score =  190 bits (483), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 120/304 (39%), Positives = 179/304 (58%), Gaps = 20/304 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVSCGQET 77
           H  VLL++V+    P    V++D T G GG+S++    K    +I +D+D FA    +E 
Sbjct: 8   HQSVLLQEVLQAFAPLEEGVLIDCTLGLGGHSKAILSQKPHLKLIGIDKDKFAQEIAKER 67

Query: 78  MRDYKEQFSLFQATFSQ-----LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           ++ ++ +++L    F++     L+ +  +K + GV+ DLGVSS+Q+D  +RGF+F  S  
Sbjct: 68  LKAFEGRYNLLSGGFAKRFKEALETH--NKEIKGVLVDLGVSSLQLDDDNRGFNFH-SHA 124

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM   G ++A  ++N   V  L +I    GE K+  +IAH I +RR   PF+  +DL
Sbjct: 125 LDMRMDLEGDLNAQKIINSYPVVALEKIFKDYGEIKEYKKIAHKIAERRAKKPFKDAKDL 184

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           S  +     FSKN +IHPAT  FQA+RI VN E+EEL + L+ A + LK G +L V+SFH
Sbjct: 185 SDFLSS---FSKNKKIHPATLVFQAVRIEVNRELEELKEFLQCA-RNLK-GAILCVISFH 239

Query: 252 SLEDRLVKKFFASRSGKVMA---VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SLED LVK  F   +   +          SN H A+ + +TKK + P+ E++  NRRSRS
Sbjct: 240 SLEDSLVKNAFKDYAKNCICDPLSFKCTCSNNH-ALGEILTKKPITPSPEEIKNNRRSRS 298

Query: 309 AKLR 312
           AK+R
Sbjct: 299 AKMR 302


>gi|312140150|ref|YP_004007486.1| sam dependent methyltransferase mraw [Rhodococcus equi 103S]
 gi|311889489|emb|CBH48806.1| SAM dependent methyltransferase MraW [Rhodococcus equi 103S]
          Length = 390

 Score =  190 bits (483), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 116/326 (35%), Positives = 180/326 (55%), Gaps = 30/326 (9%)

Query: 20  HVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPF 69
           HVPVLL +   LL PA         G V++DAT G GG+S  F +   G ++I LDRDP 
Sbjct: 71  HVPVLLNRADDLLGPAITADNPRGDGAVMIDATLGLGGHSEYFLRTYPGLHLIGLDRDPE 130

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD------GVVFDLGVSSMQIDCGDR 123
           A+    + +  Y ++ +     +  + + +   G+D       ++FDLGVSSMQ+D  DR
Sbjct: 131 ALRIASDRLAPYADRTTFVHTRYDGIVEALGQAGLDPVGSVHAILFDLGVSSMQLDEADR 190

Query: 124 GFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GF++    PLDMRM+  +GI+A++V+N  +  +L RIL   GEE+ A RIA  IV+RRQ 
Sbjct: 191 GFAYSIDAPLDMRMNPTTGITAAEVLNTYSHGELARILSTYGEERFAGRIASEIVRRRQK 250

Query: 183 APFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            PF T+  L  L+  T+   ++    HPA R+FQALR+ VN E++ L   + +   AL  
Sbjct: 251 QPFTTSAALVELLYDTIPAATRRTGGHPAKRTFQALRVEVNGELDSLRDAIPAGLDALAV 310

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRS------GKVMAVRHMIPSNAHPAVFQSITKKVVVP 295
           GG ++ +S+ SLEDR+VK+  A R+      G  + +  M P       F+ +T+     
Sbjct: 311 GGRVVFMSYQSLEDRVVKQELAPRAKSKTPEGLPVELPGMGPE------FKILTRGAERA 364

Query: 296 TQEDVAFNRRSRSAKLRAGMRTVERS 321
           ++ ++  N R+   +LRA  R   ++
Sbjct: 365 SEAEIEDNPRAAPVRLRAAERIARKA 390


>gi|332670119|ref|YP_004453127.1| S-adenosyl-methyltransferase MraW [Cellulomonas fimi ATCC 484]
 gi|332339157|gb|AEE45740.1| S-adenosyl-methyltransferase MraW [Cellulomonas fimi ATCC 484]
          Length = 337

 Score =  190 bits (483), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 117/318 (36%), Positives = 190/318 (59%), Gaps = 18/318 (5%)

Query: 15  HTIGD----HVPVLLEKVIALLNPAP---GKVILDATFGAGGYS----RSFCKMGSNVIA 63
           H +GD    H PVLL++ + LL PA    G V++D+T G GG++    R+F  +   V+ 
Sbjct: 4   HDLGDAATRHTPVLLQRCLDLLAPALAADGSVMVDSTLGMGGHTEGVLRAFPHV--RVVG 61

Query: 64  LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDC 120
           +DRDP A++     +  + ++F+   A + ++ + +   G+D   GV+ DLGVSS+Q+D 
Sbjct: 62  IDRDPQALALAGRRLAPFGDRFTGVHAVYDEIGEVLDGLGIDHVQGVLMDLGVSSLQLDE 121

Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS+    PLDMRM  S G +A+DVVN  + +DL R+L + GEE+ A+RIA ++V+ 
Sbjct: 122 RERGFSYAHDAPLDMRMDASRGQTAADVVNGYDERDLARVLRVYGEERFAARIARSVVRA 181

Query: 180 RQSAPFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R+ AP   T +L  L++ ++   ++    HPA R+FQALRI VN E+E L + L ++ +A
Sbjct: 182 REKAPLTRTGELVDLVRASIPAATRKTGGHPAKRTFQALRIEVNGELEVLERALPASVEA 241

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L  GG ++V ++HSLEDRLVK+  A+ +         +    H    + +T+      + 
Sbjct: 242 LAVGGRIVVEAYHSLEDRLVKRTLAAGATSSAPPDLPVEPETHAPYLRLVTRGAEEADEA 301

Query: 299 DVAFNRRSRSAKLRAGMR 316
           ++A N R++S +LRA  R
Sbjct: 302 ELARNPRAQSVRLRAAER 319


>gi|145637120|ref|ZP_01792783.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae PittHH]
 gi|145269774|gb|EDK09714.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae PittHH]
          Length = 321

 Score =  190 bits (483), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 128/318 (40%), Positives = 182/318 (57%), Gaps = 30/318 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQE 76
           H+ VLL + +  L      + +D TFG GG+SR    ++ SN  +IA+DRDP A++   E
Sbjct: 12  HITVLLHEAVNGLALKENGIYIDGTFGRGGHSRFILSQLSSNGRLIAVDRDPRAIA---E 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
             +    +F +   +FS + + + DK      +DG++ DLGVSS Q+D  +RGFSF K G
Sbjct: 69  AHKIQDSRFQIEHNSFSHIPE-ICDKLNLVGKIDGILLDLGVSSPQLDEAERGFSFMKDG 127

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ- 189
           PLDMRM  + G+SA + + Q +++DLT +L   GEE+ A RIA AIV   +SA   +T+ 
Sbjct: 128 PLDMRMDTTQGLSAEEWLKQVSIEDLTWVLKTFGEERFAKRIATAIVDFNKSAVKNSTEF 187

Query: 190 -----DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
                 L+ LI + V F K+   HPATRSFQA+RIF+N+E++EL   L SA   L   G 
Sbjct: 188 LSRTSQLAELISQAVPF-KDKYKHPATRSFQAIRIFINSELDELESLLNSALDMLAPEGR 246

Query: 245 LIVVSFHSLEDRLVKKFFASRSG-----KVMAVRH-MIPSNAHPAVFQSITKKVVVPTQE 298
           L ++SFHSLEDR+VK F   +S      K + +R   I  N        I  K + P+  
Sbjct: 247 LSIISFHSLEDRMVKHFMKKQSKGEDIPKGLPLREDQIQRNQK----LRIIGKAIQPSDA 302

Query: 299 DVAFNRRSRSAKLRAGMR 316
           ++  N RSRSA LR   R
Sbjct: 303 EIQANPRSRSAILRVAER 320


>gi|317178936|dbj|BAJ56724.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori F30]
          Length = 308

 Score =  190 bits (483), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 121/304 (39%), Positives = 178/304 (58%), Gaps = 20/304 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVSCGQET 77
           H  VLL++V+    P    V++D T G GG+S++    K    +I +D+D FA    +E 
Sbjct: 8   HQSVLLQEVLQAFAPLEEGVLIDCTLGLGGHSKAILSQKPHLKLIGIDKDKFAQEIAKER 67

Query: 78  MRDYKEQFSLFQATFSQ-----LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           ++ ++ +++L    F++     L+ +  DK + GV+ DLGVSS+Q+D  +RGF+F  S  
Sbjct: 68  LKAFEGRYNLLSGGFAKRFKEALETH--DKEIKGVLVDLGVSSLQLDDDNRGFNFH-SHA 124

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM   G ++A  V+N   V  L +I    GE K+  +IAH I +RR   PF+  +DL
Sbjct: 125 LDMRMDLEGGLNAQKVINSYPVVALEKIFKDYGEIKEYKKIAHKIAERRAKKPFKDAKDL 184

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           S  +      SKN +IHPAT  FQA+RI VN E+EEL + L+ A + LK G +L V+SFH
Sbjct: 185 SDFLSS---LSKNKKIHPATLVFQAVRIEVNRELEELKEFLQCA-RNLK-GAILCVISFH 239

Query: 252 SLEDRLVKKFFASRSGKVMA---VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SLED LVK  F   +   +          SN H A+ + +TKK + P+ E++  NRRSRS
Sbjct: 240 SLEDSLVKNAFKDYAKNCICDPLSFKCACSNNH-ALGEILTKKPITPSPEEIKNNRRSRS 298

Query: 309 AKLR 312
           AK+R
Sbjct: 299 AKMR 302


>gi|261419308|ref|YP_003252990.1| S-adenosyl-methyltransferase MraW [Geobacillus sp. Y412MC61]
 gi|297530722|ref|YP_003671997.1| S-adenosyl-methyltransferase MraW [Geobacillus sp. C56-T3]
 gi|319766124|ref|YP_004131625.1| S-adenosyl-methyltransferase MraW [Geobacillus sp. Y412MC52]
 gi|261375765|gb|ACX78508.1| S-adenosyl-methyltransferase MraW [Geobacillus sp. Y412MC61]
 gi|297253974|gb|ADI27420.1| S-adenosyl-methyltransferase MraW [Geobacillus sp. C56-T3]
 gi|317110990|gb|ADU93482.1| S-adenosyl-methyltransferase MraW [Geobacillus sp. Y412MC52]
          Length = 310

 Score =  190 bits (482), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 118/303 (38%), Positives = 179/303 (59%), Gaps = 11/303 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H  VLL++ +  LN  P  + +D T G GG+S       S    + A D+D  A+   +E
Sbjct: 4   HTTVLLKEAVDGLNIRPDGIYVDCTLGGGGHSEYLLSRLSARGKLFAFDQDEAAIMHARE 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  Y  Q       F  LQ+ +     K VDGV+FDLGVSS Q+D  +RGFS+Q   PL
Sbjct: 64  RLARYGRQVQFVHRNFRFLQEELSALGVKSVDGVLFDLGVSSPQLDEPERGFSYQHDAPL 123

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     ++A+++VN+   ++L RI    GEEK + ++A  I + R++ P +TT +L 
Sbjct: 124 DMRMDRKQRLTAAEIVNRWPYEELVRIFFRYGEEKFSKQVARKIEEVRRTRPIKTTGELV 183

Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I++ +   ++ +  HPA R FQALRI VN+E+E   + L  A + L +GG + V++FH
Sbjct: 184 DVIKEAIPAPARRSGGHPAKRIFQALRIAVNDELEAFREALEQAIELLASGGRVSVITFH 243

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+ K+ F  AS S  +     ++P +  P V + ITKK +VP++E++  NRR+RSA
Sbjct: 244 SLEDRICKETFKKASESPPLPPGLPVLPDDYRP-VLKIITKKPIVPSEEELERNRRARSA 302

Query: 310 KLR 312
           KLR
Sbjct: 303 KLR 305


>gi|145641287|ref|ZP_01796867.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae R3021]
 gi|145274124|gb|EDK13990.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae 22.4-21]
          Length = 321

 Score =  190 bits (482), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 128/318 (40%), Positives = 178/318 (55%), Gaps = 30/318 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76
           H+ VLL + +  L      + +D TFG GG+SR   S     S +IA+DRDP A++   E
Sbjct: 12  HITVLLHEAVNGLALKENGIYIDGTFGRGGHSRFILSQLSSNSRLIAVDRDPRAIA---E 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
             +    +F +   +FS + + + DK      +DG++ DLGVSS Q+D  +RGFSF K G
Sbjct: 69  AHKIQDSRFQIEHNSFSHIPE-ICDKLNLVGKIDGILLDLGVSSPQLDEAERGFSFMKDG 127

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP------ 184
           PLDMRM  + G+SA + + Q +++DLT +L   GEE+ A RIA AIV   +SA       
Sbjct: 128 PLDMRMDTTQGLSAEEWLKQVSIEDLTWVLKTFGEERFAKRIATAIVDFNKSAVKNGTEF 187

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
              T  L+ LI + V F K+   HPATRSFQA+RIF+N+E++EL   L SA   L   G 
Sbjct: 188 LSRTSQLAELISQAVPF-KDKHKHPATRSFQAIRIFINSELDELESLLNSALDMLAPEGR 246

Query: 245 LIVVSFHSLEDRLVKKFFASRSG-----KVMAVRH-MIPSNAHPAVFQSITKKVVVPTQE 298
           L ++SFHSLEDR+VK F   +S      K + +R   I  N        I  K + P+  
Sbjct: 247 LSIISFHSLEDRMVKHFMKKQSKGEDIPKGLPLREDQIQRNQK----LRIIGKAIQPSDA 302

Query: 299 DVAFNRRSRSAKLRAGMR 316
           ++  N RSRSA LR   R
Sbjct: 303 EIQANPRSRSAILRVAER 320


>gi|212639664|ref|YP_002316184.1| putative S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [Anoxybacillus flavithermus
           WK1]
 gi|263446761|sp|B7GGJ0|RSMH_ANOFW RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|212561144|gb|ACJ34199.1| Predicted S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [Anoxybacillus flavithermus
           WK1]
          Length = 313

 Score =  190 bits (482), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 117/314 (37%), Positives = 176/314 (56%), Gaps = 16/314 (5%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           M+S  HH     V VLL++ +  LN       +D T G  G+S       S    + A D
Sbjct: 1   MTSLFHH-----VTVLLKETVDGLNIKKDGTYVDCTLGGAGHSEYLLSQLSPEGRLFAFD 55

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGD 122
           +D  A+   Q+ +  Y+ QF++ ++ F  L+  +   GV   DG++FDLGVSS Q+D  +
Sbjct: 56  QDDIAIRHAQQRLERYRGQFTIIKSNFRYLKQQLALYGVHEVDGILFDLGVSSPQLDMPE 115

Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFS+Q   PLDMRM     ++A DVVN    + L +I    GEEK +  IA  I + R+
Sbjct: 116 RGFSYQHEAPLDMRMDREQTLTAYDVVNTWPYEQLVKIFFQYGEEKFSKAIARKIEQTRK 175

Query: 182 SAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
             P +TT +L+ +I++ +   ++    HPA R FQA+RI VN+E+    + +  A   LK
Sbjct: 176 QKPIETTTELAEVIKEAIPAPARRTGGHPAKRVFQAIRIAVNDELRAFEEAIEQAIDLLK 235

Query: 241 AGGLLIVVSFHSLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
            GG + V++FHSLEDR+ K  F  AS +  +     +IP    P + + ITKK +VP++E
Sbjct: 236 PGGRISVITFHSLEDRICKIAFKQASETPHLPPGLPIIPDEYKPKL-KIITKKPIVPSEE 294

Query: 299 DVAFNRRSRSAKLR 312
           ++  N R+RSAKLR
Sbjct: 295 ELQHNHRARSAKLR 308


>gi|229162854|ref|ZP_04290811.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus R309803]
 gi|228620736|gb|EEK77605.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus R309803]
          Length = 310

 Score =  190 bits (482), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 115/303 (37%), Positives = 173/303 (57%), Gaps = 11/303 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HV VLL++ +  L+  PG   +D T G GG+S         G  +IA D+D  A+   +E
Sbjct: 4   HVTVLLKETVDGLDIKPGGTYVDCTLGGGGHSSYLLSQLTDGGKLIAFDQDEIAIQNAKE 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
               Y EQF   ++ F  L + + + G   VDG++FDLGVSS Q+D  +RGFS+    PL
Sbjct: 64  KFASYGEQFVTVKSNFRYLSEKLQELGIAEVDGILFDLGVSSPQLDTPERGFSYHHDAPL 123

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     ++A DVVN  + + L RI    GEEK + +IA  I   R++   +TT +L 
Sbjct: 124 DMRMDQDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTGELV 183

Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            LI++ +   ++    HPA R FQA+RI VN+E++   + L SA   +K GG + V++FH
Sbjct: 184 ELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAISMVKPGGRISVITFH 243

Query: 252 SLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+ K  F   S + ++     +IP    P + + IT+K ++P+  ++  N R+RSA
Sbjct: 244 SLEDRICKTTFKRNSTTPQLPPGLPIIPEEFKPKL-KLITRKPILPSDIELEENNRARSA 302

Query: 310 KLR 312
           KLR
Sbjct: 303 KLR 305


>gi|297559864|ref|YP_003678838.1| S-adenosyl-methyltransferase MraW [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296844312|gb|ADH66332.1| S-adenosyl-methyltransferase MraW [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 357

 Score =  190 bits (482), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 111/307 (36%), Positives = 176/307 (57%), Gaps = 10/307 (3%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74
           HVPV+L++++ LL PA   PG V++D T G GG+S +  +   G  ++ +DRD  A+   
Sbjct: 45  HVPVMLDRIVELLAPALERPGAVLVDGTLGLGGHSEALLRACPGMRLVGVDRDTTALERS 104

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQKSG 131
              +  Y ++     A +S +   + + G      V+ DLGVSS Q+D  DRGF++    
Sbjct: 105 AARLAPYADRTHFVHAVYSDIPRALDEAGAAEADAVLLDLGVSSPQLDETDRGFAYAHDA 164

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM     ++A++VVN   V +LTR+L   GEE+ ASR+A AI ++R  AP ++T+ 
Sbjct: 165 PLDMRMDRDQSLTAAEVVNTYPVAELTRVLRTYGEERFASRVARAIERQRAQAPIESTRA 224

Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ L+++ +   ++    HPA R+FQ LRI VN E+  L + L +A   L  GG + V+S
Sbjct: 225 LAELVREAIPAATRRTGGHPAKRAFQGLRIEVNAELSILERALPAAIARLAGGGRVAVLS 284

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           +HSLEDR+ K+  A+ +         +P        + +T+   +PT E+   N R++SA
Sbjct: 285 YHSLEDRMTKRALAALATDTTPADLPVPLPERQPELRLLTRGAELPTDEENERNPRAQSA 344

Query: 310 KLRAGMR 316
           +LRA  R
Sbjct: 345 RLRAAER 351


>gi|188997242|ref|YP_001931493.1| S-adenosyl-methyltransferase MraW [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|262825725|sp|B2V5J5|RSMH_SULSY RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|188932309|gb|ACD66939.1| S-adenosyl-methyltransferase MraW [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 293

 Score =  190 bits (482), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 110/305 (36%), Positives = 182/305 (59%), Gaps = 22/305 (7%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76
           +H  VL ++V+       G+V +DAT G GG+S    K   N+  I LD+D +A+   +E
Sbjct: 3   EHYSVLHKEVLEFSKLIEGEVFVDATVGGGGHSYLILKQNLNLKLIGLDKDDYALKVAKE 62

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +++++++ +L +++F  L   +     K ++G++FD GVS+ Q+   +RGFSFQ+   L
Sbjct: 63  RLKEFEDRITLVKSSFKDLDKVLQSLQIKEINGILFDFGVSTFQLKL-ERGFSFQREEFL 121

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  +  ++A D+VN    +DL  I+   GEEK AS+IA +IV+ R+    +TT++L+
Sbjct: 122 DMRMDTTQKLTAYDIVNYYREQDLYNIIKTYGEEKFASKIAKSIVEYRKKKKIETTKELA 181

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            ++ +    + ++ +IHPATR+FQA+RI VNNE++++ +GL  A   L   G+++ +SFH
Sbjct: 182 DIVYRCYPPNLRHGKIHPATRTFQAIRIEVNNELKDIEEGLEKAINLLAKNGIIMAISFH 241

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+VK              +M          + +TKK + P+ E++  N  SRSAKL
Sbjct: 242 SLEDRIVK--------------NMFKKYKELKFLEILTKKPITPSDEEIKENPASRSAKL 287

Query: 312 RAGMR 316
           R G R
Sbjct: 288 RVGRR 292


>gi|295839424|ref|ZP_06826357.1| S-adenosyl-methyltransferase [Streptomyces sp. SPB74]
 gi|295827469|gb|EFG65411.1| S-adenosyl-methyltransferase [Streptomyces sp. SPB74]
          Length = 312

 Score =  190 bits (482), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 112/291 (38%), Positives = 171/291 (58%), Gaps = 12/291 (4%)

Query: 21  VPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQ 75
           +PV+L + + LL PA   PG V++D T G GG+S +       + ++ALDRD  A+    
Sbjct: 1   MPVMLRRCLDLLGPALAEPGAVVVDCTLGLGGHSEALLSTFPAARLVALDRDKEALRLAG 60

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E +  + E+  L  A + +L D +   G   V GV+FDLGVSSMQ+D   RGF++ +  P
Sbjct: 61  ERLAPFGERALLAHAVYDELPDVLERLGIPRVQGVLFDLGVSSMQLDEAGRGFAYAQDAP 120

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G+SA++V+N     +L RIL   GEEKQA RI  A+V+ R+  PF  +  L
Sbjct: 121 LDMRMDQSAGMSAAEVLNTYPPGELVRILRTYGEEKQARRIVSAVVREREKEPFTRSARL 180

Query: 192 SSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             LI++ +   +K    +PA R+FQALRI VN E+  L + + +A  +L  GG + V+++
Sbjct: 181 VELIREALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVNSLAVGGRIAVLAY 240

Query: 251 HSLEDRLVKKFFAS-RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300
           HSLEDRLVK+  ++  +G       ++P    P   + +T+   +P +E+V
Sbjct: 241 HSLEDRLVKQVLSTGATGTAPPGLPVVPERYQPR-LKLLTRGAELPAEEEV 290


>gi|167630120|ref|YP_001680619.1| s-adenosyl-methyltransferase mraw [Heliobacterium modesticaldum
           Ice1]
 gi|263456105|sp|B0TGB2|RSMH_HELMI RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|167592860|gb|ABZ84608.1| s-adenosyl-methyltransferase mraw [Heliobacterium modesticaldum
           Ice1]
          Length = 313

 Score =  190 bits (482), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 120/304 (39%), Positives = 183/304 (60%), Gaps = 10/304 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+PVLL +V+ +L P P  V LD T G GG+S +  +  S    VI LD+DP A++    
Sbjct: 5   HIPVLLHQVLEVLKPRPEGVYLDGTVGGGGHSAAILQKLSGRGRVIGLDQDPAALAAAGR 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            +  + ++ +L ++ F  +   V + G    +DG++ D+GVSS Q+D  +RGF+++   P
Sbjct: 65  KLASFGDRVTLVRSNFRHIGAVVAELGLTGKIDGILLDIGVSSHQLDEAERGFTYRMDAP 124

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+  S ++AS ++N+A   ++ RIL   GEE+ A RIA  IVKRR   P + T +L
Sbjct: 125 LDMRMNPESALTASKLLNEAPEGEIARILRDYGEERWAKRIAQFIVKRRALQPLERTGEL 184

Query: 192 -SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
              +       ++    HPA R+FQALRI VN+E+  L + L +A +AL  GG L V+SF
Sbjct: 185 VDIIRAAIPAAARQEGGHPAKRTFQALRIAVNDELGALEEALPAALEALAPGGRLAVISF 244

Query: 251 HSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK FFA ++ G +      + +  +    + ITKK +V + E++  N R++SA
Sbjct: 245 HSLEDRIVKSFFAEQARGCLCPPDFPVCACGNRPKVKIITKKPLVGSDEEMRANPRAQSA 304

Query: 310 KLRA 313
           KLRA
Sbjct: 305 KLRA 308


>gi|146281460|ref|YP_001171613.1| S-adenosyl-methyltransferase MraW [Pseudomonas stutzeri A1501]
 gi|145569665|gb|ABP78771.1| S-adenosyl-methyltransferase MraW [Pseudomonas stutzeri A1501]
          Length = 293

 Score =  190 bits (482), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 115/284 (40%), Positives = 172/284 (60%), Gaps = 16/284 (5%)

Query: 41  LDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD 97
           LD TFG GG+SR   + +G N  ++  D+DP A++ GQ  +     +F + Q +F++L D
Sbjct: 8   LDGTFGRGGHSRLLLQQLGPNGQLLGFDKDPLAIATGQ-ALAAEDGRFVVVQRSFAELGD 66

Query: 98  YVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQAN 152
            V  +G    V G++ DLGVSS Q+D   RGFSF   GPLDMRM  S G+SA++ +  A+
Sbjct: 67  EVAQRGWTGAVSGILLDLGVSSPQLDDPIRGFSFLNDGPLDMRMDPSRGVSAAEWIASAD 126

Query: 153 VKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATR 212
             ++ R+    GEE+ A R+A A+V+RR  APF+ T DL+ ++       +  +  PATR
Sbjct: 127 EDEIARVFKDYGEERFAKRMARAVVQRRAEAPFERTADLAKVLTDANPAWEKGK-SPATR 185

Query: 213 SFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRS-GKVMA 271
           +FQ LRI +NNE+ +L +GL +A  AL+ GG L+V+SFHSLEDR+VK+F    + G+   
Sbjct: 186 AFQGLRIHINNELGDLERGLDAALDALEVGGRLVVISFHSLEDRIVKQFMRRHAKGEADK 245

Query: 272 VRHMIPSNAHPAVFQSITKKVVVP---TQEDVAFNRRSRSAKLR 312
           +   +P    P  F+   K +  P   ++ +V  N RSRSA +R
Sbjct: 246 LPRDLP--IIPKAFEPRLKLIGKPQYASEAEVKANPRSRSAVMR 287


>gi|333027784|ref|ZP_08455848.1| putative S-adenosyl-methyltransferase [Streptomyces sp. Tu6071]
 gi|332747636|gb|EGJ78077.1| putative S-adenosyl-methyltransferase [Streptomyces sp. Tu6071]
          Length = 312

 Score =  190 bits (482), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 110/291 (37%), Positives = 170/291 (58%), Gaps = 12/291 (4%)

Query: 21  VPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQ 75
           +PV+L + + LL PA   PG V++D T G GG+S +       + ++ALDRD  A+    
Sbjct: 1   MPVMLRRCLDLLGPALAEPGAVVVDCTLGLGGHSEALLSTFPAARLVALDRDKEALRLAG 60

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E +  + E+  L  A + +L D +   G   V G++FDLGVSSMQ+D  DRGF++ +  P
Sbjct: 61  ERLAPFGERAMLAHAVYDELPDVLDRLGIPRVQGILFDLGVSSMQLDEADRGFAYAQDAP 120

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM   +G+SA++V+N     +L RIL   GEEKQA RI  A+V+ R+  PF  +  L
Sbjct: 121 LDMRMDQTAGLSAAEVLNTYPPGELVRILRTYGEEKQARRIVSAVVREREKEPFARSARL 180

Query: 192 SSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             LI++ +   +K    +PA R+FQALRI VN E+  L + + +A   L  GG + V+++
Sbjct: 181 VELIREALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVNTLAVGGRIAVLAY 240

Query: 251 HSLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDV 300
           HSLEDRLVK+  ++ +         ++P    P   + +T+   +P +E+V
Sbjct: 241 HSLEDRLVKQVLSTGATSTAPPGLPVVPERYQPR-LKLLTRGAELPAEEEV 290


>gi|68249679|ref|YP_248791.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae 86-028NP]
 gi|148826257|ref|YP_001291010.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae PittEE]
 gi|229846161|ref|ZP_04466273.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae 7P49H1]
 gi|81335891|sp|Q4QLG6|RSMH_HAEI8 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263456014|sp|A5UCX6|RSMH_HAEIE RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|68057878|gb|AAX88131.1| predicted S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [Haemophilus influenzae
           86-028NP]
 gi|148716417|gb|ABQ98627.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae PittEE]
 gi|229811165|gb|EEP46882.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae 7P49H1]
          Length = 321

 Score =  190 bits (482), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 128/318 (40%), Positives = 184/318 (57%), Gaps = 30/318 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQE 76
           H+ VLL + +  L      + +D TFG GG+SR    ++ SN  +IA+DRDP A++   +
Sbjct: 12  HITVLLHEAVNGLALKENGIYIDGTFGRGGHSRFILSQLSSNGRLIAVDRDPRAIAEAHK 71

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            ++D +  F +   +FS + + + DK      +DG++ DLGVSS Q+D  +RGFSF K G
Sbjct: 72  -IQDLR--FQIEHNSFSHIPE-ICDKLNLVGKIDGILLDLGVSSPQLDEAERGFSFMKDG 127

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ- 189
           PLDMRM  + G+SA + + Q +++DLT +L   GEE+ A RIA AIV   +SA   +T+ 
Sbjct: 128 PLDMRMDTTQGLSAEEWLKQVSIEDLTWVLKTFGEERFAKRIATAIVDFNKSAVKNSTEF 187

Query: 190 -----DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
                 L+ LI + V F K+   HPATRSFQA+RIF+N+E++EL   L SA   L   G 
Sbjct: 188 LSRTSQLAELISQAVPF-KDKHKHPATRSFQAIRIFINSELDELESLLNSALDMLAPEGR 246

Query: 245 LIVVSFHSLEDRLVKKFFASRSG-----KVMAVRH-MIPSNAHPAVFQSITKKVVVPTQE 298
           L ++SFHSLEDR+VK F   +S      K + +R   I  N        I  K + P+  
Sbjct: 247 LSIISFHSLEDRMVKHFMKKQSKGEDIPKGLPLREDQIQRNQK----LRIIGKAIQPSDA 302

Query: 299 DVAFNRRSRSAKLRAGMR 316
           ++  N RSRSA LR   R
Sbjct: 303 EIQANPRSRSAILRVAER 320


>gi|54023726|ref|YP_117968.1| S-adenosyl-methyltransferase MraW [Nocardia farcinica IFM 10152]
 gi|115311586|sp|Q5YYY7|RSMH_NOCFA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|54015234|dbj|BAD56604.1| putative methyltransferase [Nocardia farcinica IFM 10152]
          Length = 324

 Score =  190 bits (482), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 115/310 (37%), Positives = 176/310 (56%), Gaps = 13/310 (4%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74
           HVPVLLE+   LL PA   PG V +DAT G GG++  F     G  ++ LDRD  A+   
Sbjct: 10  HVPVLLERADELLGPALTEPGAVYVDATLGLGGHAEHFLTRYPGLRLVGLDRDTEALRLA 69

Query: 75  QETMRDYKEQFSLFQATFSQLQDYV------PDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
            E +  + E+ +L    +  + D +      P   V  ++ DLGVSSMQ+D  +RGF++ 
Sbjct: 70  GERLAPFAERITLVHTRYDGIADALGQAGLPPTGSVSAILMDLGVSSMQLDEAERGFAYS 129

Query: 129 KSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
              PLDMRM   SGI+A+DV+N  +  DL R+L   GEE+ A +IA  +++RR   PF+T
Sbjct: 130 VDAPLDMRMDPTSGITAADVLNTYSHGDLARVLKNYGEERFAGKIASEVIRRRAHKPFET 189

Query: 188 TQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           + +L  L+  T+   ++    HPA R+FQALR+ VN E++ L   L +A  AL+ GG ++
Sbjct: 190 SGELVELLYATIPAAARRTGGHPAKRTFQALRVEVNGELDSLRAALPAALDALRVGGRIV 249

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+S+ SLEDR+VK+  A+R+     V   +        F+ +T+      + ++A N R+
Sbjct: 250 VMSYQSLEDRVVKQELAARTSSRTPVDLPVELPGMGPEFRLLTRGAEKAGEREIAENPRA 309

Query: 307 RSAKLRAGMR 316
              ++RA  R
Sbjct: 310 APVRMRAAER 319


>gi|308062033|gb|ADO03921.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori Cuz20]
          Length = 310

 Score =  190 bits (482), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 120/304 (39%), Positives = 180/304 (59%), Gaps = 20/304 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVSCGQET 77
           H  VLL++V+    P    V++D T G GG+S++    K    +I +D+D FA    +E 
Sbjct: 8   HQSVLLQEVLQAFTPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFAQEIAKER 67

Query: 78  MRDYKEQFSLFQATFSQ-----LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           ++ ++ +++L    F++     L+ +  +K + GV+ DLGVSS+Q+D  +RGF+F  S  
Sbjct: 68  LKAFEGRYNLLSGGFAKRFKEALETH--NKEIKGVLVDLGVSSLQLDDDNRGFNFH-SHA 124

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM   G ++A  V+N   V  L +I    GE K+  +IAH I +RR   PF+  +DL
Sbjct: 125 LDMRMDLEGDLNAQKVINSYPVVALEKIFKDYGEIKEYKKIAHKIAERRAKKPFKDAKDL 184

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           S  +      SKN +IHPAT  FQA+RI VN+E+EEL + L+ A + LK G +L V+SFH
Sbjct: 185 SDFLSS---LSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCA-RNLK-GAILCVISFH 239

Query: 252 SLEDRLVKKFFASRSGKVM---AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SLED LVK  F   +   +   +      SN H A+ + +TKK + P+ E++  NRRSRS
Sbjct: 240 SLEDALVKNAFKDYAKNCICDPSSFKCACSNNH-ALGEILTKKPITPSPEEIKNNRRSRS 298

Query: 309 AKLR 312
           AK+R
Sbjct: 299 AKMR 302


>gi|295706376|ref|YP_003599451.1| S-adenosyl-methyltransferase MraW [Bacillus megaterium DSM 319]
 gi|294804035|gb|ADF41101.1| S-adenosyl-methyltransferase MraW [Bacillus megaterium DSM 319]
          Length = 311

 Score =  190 bits (482), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 118/305 (38%), Positives = 177/305 (58%), Gaps = 13/305 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
           +H  VLL++    LN  P  V +D T G  G+S    K  S    +IA D+D  A++  +
Sbjct: 3   NHTTVLLKEAAEGLNIKPDGVYVDCTLGGAGHSEYIVKQLSEKGKLIAFDQDDVALANAK 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E +  Y ++  L ++ F  L++ + + G   VDGV+FDLGVSS Q+D  +RGFSF    P
Sbjct: 63  EKLAPYLDRVILIKSNFRYLKEQLMEHGIEEVDGVLFDLGVSSPQLDTPERGFSFHHDAP 122

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM   S  SA +VVN+   + L +I    GEEK + +IA  I   R+S P +TT +L
Sbjct: 123 LDMRMDQNSMFSAYNVVNEWPYEKLVKIFFQYGEEKFSKQIARKIEAYRESKPIETTLEL 182

Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             LI+  +   ++    HPA R FQA+RI VN+E++     +  A   +K GG + V++F
Sbjct: 183 VDLIKDGIPAPARRTGGHPAKRIFQAIRIAVNDELQVFEDAIEQAMDVIKKGGRVSVITF 242

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH---MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           HSLEDR+ K  F + S  V  + H   +IP    P + + IT+K ++P++E++  N+R+R
Sbjct: 243 HSLEDRICKVAFKNAS-TVPQLPHGLPIIPEEFKPKM-KVITRKPILPSEEEIEENKRAR 300

Query: 308 SAKLR 312
           SAKLR
Sbjct: 301 SAKLR 305


>gi|120555371|ref|YP_959722.1| S-adenosyl-methyltransferase MraW [Marinobacter aquaeolei VT8]
 gi|263456394|sp|A1U3G6|RSMH_MARAV RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|120325220|gb|ABM19535.1| S-adenosyl-methyltransferase MraW [Marinobacter aquaeolei VT8]
          Length = 319

 Score =  190 bits (482), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 119/309 (38%), Positives = 177/309 (57%), Gaps = 15/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQE 76
           H  VLL+  +  L        +DATFG GG+SR        G  ++ +D+DP A++  +E
Sbjct: 15  HRSVLLDAAVDYLVTDENGRYVDATFGRGGHSRLILGKLGQGGQLLGIDKDPEAIAVARE 74

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +     +F  +  +F++L   +  +G   VDGV+ DLGVSS Q+D   RGFSF + GPL
Sbjct: 75  -LASGDSRFQWYHGSFAELDLALERQGWSQVDGVLMDLGVSSPQLDDASRGFSFMRDGPL 133

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+     SA+  + +A+ +++  ++   GEE+ + RIA  +V+RRQ  P +TT+ L+
Sbjct: 134 DMRMNPQQEPSAAQWLAEADEREIADVIWRYGEERFSRRIARLVVERRQEQPIETTRQLA 193

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            L+ + V   K    HPATR+FQA+RIF+N E+E+L  GL +A   L  GG L+V+SFHS
Sbjct: 194 ELVAEAVP-KKEKHKHPATRAFQAIRIFINRELEDLEAGLAAAVDRLAPGGRLVVISFHS 252

Query: 253 LEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDRLVK+F    + G  +     + +    + FQ I K      QE +  N R+RSA  
Sbjct: 253 LEDRLVKRFMRDLARGPKLPKGIPVTAEQEESGFQLIGKASKANEQE-ITENVRARSAV- 310

Query: 312 RAGMRTVER 320
              MR +ER
Sbjct: 311 ---MRVLER 316


>gi|317484855|ref|ZP_07943747.1| MraW methylase [Bilophila wadsworthia 3_1_6]
 gi|316923901|gb|EFV45095.1| MraW methylase [Bilophila wadsworthia 3_1_6]
          Length = 355

 Score =  190 bits (482), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 115/304 (37%), Positives = 171/304 (56%), Gaps = 11/304 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+ VLL + +  L P  G   LD T G GG+S +  +       +  LDRD  A+   + 
Sbjct: 8   HISVLLNEAVDALAPKAGGRYLDGTVGMGGHSFAIMERTGGEGFLCGLDRDTQALELARI 67

Query: 77  TMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  + ++  L    +S+ +   D +    VDG + D+GVSS+QID  +RGFSF   GPL
Sbjct: 68  RLAPFGDRVHLVHTRYSEFEAALDGIGWDAVDGALIDIGVSSLQIDSAERGFSFSSDGPL 127

Query: 134 DMRMS--CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           DMRM      +  S +VN+A ++DL  I+   GE+ QA RIA AIV+ R   P +TT +L
Sbjct: 128 DMRMDRDSEELPVSRLVNRAKLEDLKDIIERYGEDPQAGRIARAIVEARVRKPIETTGEL 187

Query: 192 SSLIQKT--VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           ++L+++     +    R HPATR+FQALR+ VN+EI EL + L +    LK GG + V+S
Sbjct: 188 AALVERAYPAAWRAKARNHPATRTFQALRMAVNDEIGELERFLDTILGRLKPGGRVAVIS 247

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ-SITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK    + +   +  +H+     H A     +T K V P++ ++  N R+ S
Sbjct: 248 FHSLEDRVVKHRMKAWAQGCICPKHIPVCVCHHAPEALLVTPKPVCPSERELMLNPRAGS 307

Query: 309 AKLR 312
           AKLR
Sbjct: 308 AKLR 311


>gi|148980580|ref|ZP_01816127.1| S-adenosyl-methyltransferase [Vibrionales bacterium SWAT-3]
 gi|145961163|gb|EDK26479.1| S-adenosyl-methyltransferase [Vibrionales bacterium SWAT-3]
          Length = 316

 Score =  190 bits (482), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 121/309 (39%), Positives = 174/309 (56%), Gaps = 20/309 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H+ VLL + I  L   P    +D TFG GG+SR+   K+G N  + ++DRDP A++  Q+
Sbjct: 7   HISVLLNESIDGLAIKPDGTYIDGTFGRGGHSRTILSKLGENGRLFSIDRDPQAIAEAQK 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  +F++    FS + +Y         VDGV+ DLGVSS Q+D  +RGFSF K GP
Sbjct: 67  I---DDPRFTIIHGPFSGMAEYAERYDLVGKVDGVLLDLGVSSPQLDDAERGFSFMKDGP 123

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV---KRRQSAPFQTT 188
           LDMRM   SGI  S  + +A++ D+T ++   GE+K A RIA  I+   +  ++ P   T
Sbjct: 124 LDMRMDPTSGIPVSQWLLEADLDDITWVIREFGEDKHARRIAKGIIAYQENEENEPLTRT 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ LI      S   + HPATR+FQA RI++N+E+EE+   L+ A   L   G L V+
Sbjct: 184 GQLAKLISDVAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAASILAPEGRLSVI 243

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH--PAVFQSITK---KVVVPTQEDVAFN 303
           SFHSLEDR+VK+F    S +   V H +P       A+  +  K   K + P++ +V  N
Sbjct: 244 SFHSLEDRMVKRFIRKES-QGPQVPHGLPLTEEQIKALGSADLKPVGKAIKPSKGEVDEN 302

Query: 304 RRSRSAKLR 312
            RSRS+ LR
Sbjct: 303 TRSRSSVLR 311


>gi|297379907|gb|ADI34794.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori v225d]
          Length = 308

 Score =  190 bits (482), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 121/304 (39%), Positives = 179/304 (58%), Gaps = 20/304 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVSCGQET 77
           H  VLL++V+    P    V++D T G GG+S++    K    +I +D+D FA    +E 
Sbjct: 8   HQSVLLQEVLQAFAPLEEGVLIDCTLGLGGHSKAILSQKPHLKLIGIDKDKFAQEIAKER 67

Query: 78  MRDYKEQFSLFQATFSQ-----LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           ++ ++ +++L    F++     L+ +  DK + GV+ DLGVSS+Q+D  +RGF+F  S  
Sbjct: 68  LKAFEGRYNLLSGGFAKRFKEALETH--DKEIKGVLVDLGVSSLQLDDDNRGFNFH-SHA 124

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM   G ++A  V+N   V  L +I    GE K+  +IAH I +RR   PF+  +DL
Sbjct: 125 LDMRMDLEGDLNAQKVINSYPVVALEKIFKDYGEIKEYKKIAHKIAERRAKKPFKDAKDL 184

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           S  +      SKN +IHPAT  FQA+RI VN E+EEL + L+ A + LK G +L V+SFH
Sbjct: 185 SDFLSS---LSKNKKIHPATLVFQAVRIEVNRELEELKEFLQCA-RNLK-GAILCVISFH 239

Query: 252 SLEDRLVKKFFASRSGKVM---AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SLED LVK  F   +   +   +      SN H A+ + +TKK + P+ E++  NRRSRS
Sbjct: 240 SLEDALVKNAFKDYAKNCVCDPSSFKCACSNNH-ALGEILTKKPITPSPEEIKNNRRSRS 298

Query: 309 AKLR 312
           AK+R
Sbjct: 299 AKMR 302


>gi|241668885|ref|ZP_04756463.1| S-adenosylmethionine-dependent methyltransferase [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
 gi|254877417|ref|ZP_05250127.1| S-adenosyl-methyltransferase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254843438|gb|EET21852.1| S-adenosyl-methyltransferase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 305

 Score =  190 bits (482), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 120/304 (39%), Positives = 177/304 (58%), Gaps = 16/304 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN-VIALDRDPFAVSCGQET 77
           H  VLL++ IA LN  P  + +DATFG GG+S++   K+ S  +IA D+D  A+      
Sbjct: 2   HFSVLLQESIADLNINPEGIYIDATFGRGGHSKAILDKLTSGRLIAFDKDLDAIDYATHN 61

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++  + F +  A+F+ + DY         VDG++ DLGVSS Q+D  +RGFSF   GPL
Sbjct: 62  FQN--DNFEIVHASFTYIYDYCLQHNLLGEVDGIIMDLGVSSPQLDNANRGFSFTHDGPL 119

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTTQDL 191
           DMRM  S G++AS  + + +V +LT I  + GEE+ A +IA  I     ++    TT  L
Sbjct: 120 DMRMDISKGLTASQALEELSVDELTYIFKVYGEERFAKKIALRIKDYIAENGSITTTHQL 179

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI+ T+   K  + +PATR FQALRI+VN+E+++L   L S    +K GG +  +SFH
Sbjct: 180 AELIRATI--GKREKKNPATRCFQALRIYVNDELKDLEILLESILDVIKKGGRVAAISFH 237

Query: 252 SLEDRLVKKFFASR---SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SLEDR+VK+ F S      +   +  M+P +      + ITKK     Q++++ N RSRS
Sbjct: 238 SLEDRIVKQKFTSLINPKQETNRIAKMLPQDNSQVKMKWITKK-AKANQDELSQNVRSRS 296

Query: 309 AKLR 312
           A LR
Sbjct: 297 AILR 300


>gi|319776629|ref|YP_004139117.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Haemophilus influenzae F3047]
 gi|329124142|ref|ZP_08252689.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Haemophilus aegyptius ATCC 11116]
 gi|317451220|emb|CBY87453.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Haemophilus influenzae F3047]
 gi|327467567|gb|EGF13065.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Haemophilus aegyptius ATCC 11116]
          Length = 321

 Score =  190 bits (482), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 128/318 (40%), Positives = 180/318 (56%), Gaps = 30/318 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQE 76
           H+ VLL + +  L      + +D TFG GG+SR    ++ SN  +IA+DRDP A++   E
Sbjct: 12  HITVLLHEAVNGLALKENGIYIDGTFGRGGHSRFILSQLSSNGRLIAVDRDPRAIA---E 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
             +    +F +   +FS + + + DK      +DG++ DLGVSS Q+D  +RGFSF K G
Sbjct: 69  AHKIQDSRFQIEHNSFSHIPE-ICDKLNLVGKIDGILLDLGVSSPQLDEAERGFSFMKDG 127

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP------ 184
           PLDMRM  + G+SA + + Q +++DLT +L   GEE+ A RIA AIV   +SA       
Sbjct: 128 PLDMRMDTTQGLSAEEWLKQVSIEDLTWVLKTFGEERFAKRIATAIVDFNKSAVKNGTEF 187

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
              T  L+ LI + V F K+   HPATRSFQA+RIF+N+E++EL   L SA   L   G 
Sbjct: 188 LSRTSQLAELISQAVPF-KDKHKHPATRSFQAIRIFINSELDELESLLNSALDMLAPEGR 246

Query: 245 LIVVSFHSLEDRLVKKFFASRSG-----KVMAVRH-MIPSNAHPAVFQSITKKVVVPTQE 298
           L ++SFHSLEDR+VK F   +S      K + +R   I  N        I  K + P+  
Sbjct: 247 LSIISFHSLEDRMVKHFMKKQSKGEDIPKGLPLREDQIQRNQK----LRIIGKAIQPSDA 302

Query: 299 DVAFNRRSRSAKLRAGMR 316
           ++  N RSRSA LR   R
Sbjct: 303 EIQANPRSRSAILRVAER 320


>gi|304437331|ref|ZP_07397290.1| S-adenosyl-methyltransferase MraW [Selenomonas sp. oral taxon 149
           str. 67H29BP]
 gi|304369587|gb|EFM23253.1| S-adenosyl-methyltransferase MraW [Selenomonas sp. oral taxon 149
           str. 67H29BP]
          Length = 313

 Score =  190 bits (482), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 125/302 (41%), Positives = 164/302 (54%), Gaps = 10/302 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           HV VL E+V+A LN  PG + +DAT G  G+++      S    +I +D+D  A++  +E
Sbjct: 6   HVSVLPEEVVAALNVVPGGIYVDATLGGAGHAQRIAAQLSEQGRLIGIDQDETAIAAARE 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + D + Q SL +  F  L   +  +GV   DG +FDLGVSS QID  +RGFS+ +  PL
Sbjct: 66  RLADVRCQVSLVRDNFRHLTAILAAEGVSSVDGALFDLGVSSPQIDTPERGFSYMQDAPL 125

Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM      SA DVVN    + LT I    GEE+ A RIA  I K RQ+ P  TT DL 
Sbjct: 126 DMRMDQRARRSAYDVVNTYTAERLTEIFYTYGEERWAKRIASFIEKERQTHPITTTGDLV 185

Query: 193 SLIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           ++I + V      R  HPA R FQALRI VN+E+  L   L +A  AL+ GG L V++FH
Sbjct: 186 AVIDRAVPKEVRARGGHPAKRVFQALRIEVNDELGILEGALTAAVDALRIGGRLAVITFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK      +   +   H  I    H    + I K       E    N R+RSAK
Sbjct: 246 SLEDRIVKNTLRRLAQGCICPPHTPICVCGHTPEVRLIGKARAASAAE-CRVNTRARSAK 304

Query: 311 LR 312
           LR
Sbjct: 305 LR 306


>gi|156741091|ref|YP_001431220.1| S-adenosyl-methyltransferase MraW [Roseiflexus castenholzii DSM
           13941]
 gi|262826161|sp|A7NIA2|RSMH_ROSCS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|156232419|gb|ABU57202.1| S-adenosyl-methyltransferase MraW [Roseiflexus castenholzii DSM
           13941]
          Length = 312

 Score =  190 bits (482), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 113/304 (37%), Positives = 170/304 (55%), Gaps = 22/304 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H PVLL + +A L P PG   +D T G GG++ +  +  +    ++ +D DP A++    
Sbjct: 23  HTPVLLTETLAGLQPHPGGWYIDGTVGGGGHAAAILEATAPDGRLLGIDCDPAALAAAAA 82

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  Y E+ +L + +F ++       G   V GV+ DLGVSS Q+D  +RGFSFQ S PL
Sbjct: 83  RLAPYGERVTLVRGSFREIGRLAHKAGFVQVQGVLLDLGVSSYQLDTPERGFSFQASAPL 142

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMR+     ++A+++VN    +DL  ++    EE+ + RIA AIV+ RQ  P  TT +L+
Sbjct: 143 DMRLDPDAPMTAANLVNDLPERDLADLIFRYSEERGSRRIARAIVEARQRRPITTTDELA 202

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            ++ + +   +  RIHPATR+FQALRI VN+E+  L   L    + L  GG + +++FHS
Sbjct: 203 EIVSRALG-GRRGRIHPATRTFQALRIAVNDELTSLDAALPQIVELLVVGGRMAIITFHS 261

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK+F                + A     + IT+K V  + E+   N RSRSAKLR
Sbjct: 262 LEDRIVKQFMR--------------AEAQAGHLRLITRKPVEASSEEQRINPRSRSAKLR 307

Query: 313 AGMR 316
              R
Sbjct: 308 VAER 311


>gi|332976270|gb|EGK13132.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Desmospora sp. 8437]
          Length = 317

 Score =  190 bits (482), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 113/309 (36%), Positives = 181/309 (58%), Gaps = 9/309 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQE 76
           H  V+ E+ +  L   PG + +D T G  G+S     ++G +  +I LD+D  A+    +
Sbjct: 4   HETVMREEAVDGLLVRPGGIYVDCTLGGAGHSLLIAERLGKDGILIGLDQDDRALQAASD 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++    Q  L ++ F +L++ +   G   VDGV+FD+GVSS Q+D G+RGFS+Q   PL
Sbjct: 64  RLKGADCQVHLIKSNFRRLEEVLGRLGLDRVDGVLFDIGVSSPQLDEGERGFSYQHDAPL 123

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM   G ++A DVVN  + +++  IL   GEEK + RIA  IV+ R   P +TT +L+
Sbjct: 124 DMRMDPDGELTARDVVNDWSEEEIAHILFRYGEEKFSRRIARKIVETRSQYPIETTGELA 183

Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           ++I++ +   ++    HPA RSFQA+RI VN+E+    +GL  A ++L +GG + V++FH
Sbjct: 184 AVIKEGIPAPARRKGPHPARRSFQAIRIAVNDELNAFEEGLEQAVRSLNSGGRVSVITFH 243

Query: 252 SLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+ K+FF  ++ G +      + +       + ITKK + P+  +   N R+RSA+
Sbjct: 244 SLEDRICKRFFQEKARGCICPPDFPVCTCGKTPELRIITKKSLQPSAAETGRNPRARSAR 303

Query: 311 LRAGMRTVE 319
           LR   +  E
Sbjct: 304 LRIAEKCEE 312


>gi|300871667|ref|YP_003786540.1| S-adenosyl-methyltransferase MraW [Brachyspira pilosicoli 95/1000]
 gi|300689368|gb|ADK32039.1| S-adenosyl-methyltransferase, MraW [Brachyspira pilosicoli 95/1000]
          Length = 297

 Score =  189 bits (481), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 100/299 (33%), Positives = 169/299 (56%), Gaps = 16/299 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H PV+L+++++ + P    + +DAT G GG++++   +   V + +RD   +   +E ++
Sbjct: 7   HTPVMLKEILSFI-PENANIAVDATLGEGGHTKAMLDLNLEVHSFERDDKILEVAKERLK 65

Query: 80  DYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
           DYK +F  +  T+ ++ + + +     VD +++DLGVS       +RGFSF+    LDMR
Sbjct: 66  DYK-KFHYYNNTYDKMLEELNENVIGNVDFMLYDLGVSMFHFKKANRGFSFKDDVKLDMR 124

Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI- 195
           +  +  SA DV+N  + K+L R+    GE   AS+IA+ IV  R+    +T+++L ++I 
Sbjct: 125 LGINNKSAYDVINSYSEKELERVFREYGEMHNASKIANIIVNERKKKSIETSKELENIIF 184

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
             T    +  +IHPAT  FQA+RI VN+E+  L + + +  K LK GG+  ++S+HSLED
Sbjct: 185 HHTDKAKRFGKIHPATLVFQAIRIEVNDELNILEKSISNISKILKNGGVAAIMSYHSLED 244

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           R+VK+F                +     +F+ +  KV+ PT E++  N  SRSAKLR  
Sbjct: 245 RIVKRFLKDNE----------KTKNKDGIFKLLNSKVITPTNEEIKLNPASRSAKLRVA 293


>gi|284053843|ref|ZP_06384053.1| S-adenosyl-methyltransferase MraW [Arthrospira platensis str.
           Paraca]
          Length = 312

 Score =  189 bits (481), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 122/311 (39%), Positives = 174/311 (55%), Gaps = 30/311 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQ-- 75
           H+PVL  ++I  L    G   LDAT G GG+++   +   NV   A+DRD  A++  +  
Sbjct: 19  HIPVLGRELIEGLAVQEGGHYLDATVGGGGHTKMIFQGAPNVRVTAIDRDLEAIAAAKSM 78

Query: 76  --ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             +TM +  ++   +   FSQ     P +  DG++ DLGV+S Q+D   RGFSF+  GPL
Sbjct: 79  LMDTMGNCGDRLQFWHGNFSQYPS-SPSQ-FDGIIADLGVNSHQLDTPGRGFSFRHCGPL 136

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+    +SA++++N  + K L  I    GEE+ + RIA  IV++R   PFQTT+ L+
Sbjct: 137 DMRMNPQDPLSAAEIINTWDEKQLADIFYTYGEERLSRRIARQIVQKR---PFQTTEQLA 193

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             I   V    +  RIHPATR FQALRI VN E+  L   L +A   LK GG + ++SFH
Sbjct: 194 GAIANCVPSKYRYGRIHPATRVFQALRIAVNGELSALETFLETAPTWLKPGGRIGIISFH 253

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR VK  F          RH      HP + + +TKK + P  ++++ N R+RSAKL
Sbjct: 254 SLEDRPVKHGF----------RH------HP-LLKVLTKKPITPQPDEISQNPRARSAKL 296

Query: 312 RAGMRTVERSI 322
           R   R    ++
Sbjct: 297 RLAQRNTNETL 307


>gi|145633140|ref|ZP_01788872.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae 3655]
 gi|144986366|gb|EDJ92945.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae 3655]
          Length = 321

 Score =  189 bits (481), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 128/318 (40%), Positives = 181/318 (56%), Gaps = 30/318 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQE 76
           H+ VLL + +  L      + +D TFG GG+SR    ++ SN  +IA+DRDP A+    E
Sbjct: 12  HITVLLHEAVNGLALKENGIYIDGTFGRGGHSRFILSQLSSNGRLIAVDRDPRAIV---E 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
             +    +F +   +FS + + + DK      +DG++ DLGVSS Q+D  +RGFSF K G
Sbjct: 69  AHKIQDSRFQIEHNSFSHIPE-ICDKLNLVGKIDGILLDLGVSSPQLDEAERGFSFMKDG 127

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ- 189
           PLDMRM  + G+SA + + Q +++DLT +L   GEE+ A RIA AIV   +SA   +T+ 
Sbjct: 128 PLDMRMDTTQGLSAEEWLKQVSIEDLTWVLKTFGEERFAKRIATAIVDFNKSAVKNSTEF 187

Query: 190 -----DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
                 L+ LI + V F K+   HPATRSFQA+RIF+N+E++EL   L SA   L   G 
Sbjct: 188 LSRTSQLAELISQAVPF-KDKHKHPATRSFQAIRIFINSELDELESLLNSALDMLAPEGR 246

Query: 245 LIVVSFHSLEDRLVKKFFASRSG-----KVMAVRH-MIPSNAHPAVFQSITKKVVVPTQE 298
           L ++SFHSLEDR+VK F   +S      K + +R   I  N        I  K + P+  
Sbjct: 247 LSIISFHSLEDRMVKHFMKKQSKGEDIPKGLPLREDQIQRNQK----LRIIGKAIQPSDA 302

Query: 299 DVAFNRRSRSAKLRAGMR 316
           ++  N RSRSA LR   R
Sbjct: 303 EIQANPRSRSAILRVAER 320


>gi|89074178|ref|ZP_01160677.1| S-adenosyl-methyltransferase [Photobacterium sp. SKA34]
 gi|89050114|gb|EAR55640.1| S-adenosyl-methyltransferase [Photobacterium sp. SKA34]
          Length = 315

 Score =  189 bits (481), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 122/315 (38%), Positives = 183/315 (58%), Gaps = 23/315 (7%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQ 75
           +HV VLL + +  L   P  + +D TFG GG+SR     +G N  + ++DRDP A++  Q
Sbjct: 6   EHVSVLLNESVDGLAIKPDGIYIDGTFGRGGHSRLILSHLGENGRLYSIDRDPQAIAEAQ 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +       +F +    FS ++ Y+ ++     VDGV+ DLGVSS Q+D  +RGFSF + G
Sbjct: 66  KI---DDPRFEIIHGPFSGMEKYMEERDLIGRVDGVLLDLGVSSPQLDDAERGFSFMRDG 122

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---PFQT 187
           PLDMRM   SG SA++ + +A   D+  +L   GEE+ A RIA  IV+ R++    P   
Sbjct: 123 PLDMRMDPTSGQSAAEWLAEAEADDIAWVLKEFGEERFAKRIARGIVEHRENPEKEPLTR 182

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T++L+SLI     F K+   HPATRSFQA+RI++N+E++E+   L  A   L   G L V
Sbjct: 183 TRELASLIAAVSPF-KDKHKHPATRSFQAIRIYINSELDEIETALNGAVNILAPEGRLSV 241

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH------PAVFQSITKKVVVPTQEDVA 301
           +SFHSLEDR+VK+F   +S K   V   +P           A  +++  K + P+Q+++ 
Sbjct: 242 ISFHSLEDRMVKRFIRKQS-KGPEVPAGLPLTEEQIKALGSAALKTVG-KAIKPSQDELG 299

Query: 302 FNRRSRSAKLRAGMR 316
           +N R+RS+ LR   R
Sbjct: 300 YNTRARSSVLRLAQR 314


>gi|110800523|ref|YP_696548.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens ATCC
           13124]
 gi|110803229|ref|YP_699148.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens SM101]
 gi|168206081|ref|ZP_02632086.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens E str.
           JGS1987]
 gi|168210772|ref|ZP_02636397.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens B str.
           ATCC 3626]
 gi|168215224|ref|ZP_02640849.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens CPE str.
           F4969]
 gi|168215494|ref|ZP_02641119.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens NCTC
           8239]
 gi|169343521|ref|ZP_02864520.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens C str.
           JGS1495]
 gi|122958788|sp|Q0TP92|RSMH_CLOP1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|123047275|sp|Q0SRV9|RSMH_CLOPS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|110675170|gb|ABG84157.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens ATCC
           13124]
 gi|110683730|gb|ABG87100.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens SM101]
 gi|169298081|gb|EDS80171.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens C str.
           JGS1495]
 gi|170662388|gb|EDT15071.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens E str.
           JGS1987]
 gi|170711095|gb|EDT23277.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens B str.
           ATCC 3626]
 gi|170713370|gb|EDT25552.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens CPE str.
           F4969]
 gi|182382153|gb|EDT79632.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens NCTC
           8239]
          Length = 310

 Score =  189 bits (481), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 119/308 (38%), Positives = 176/308 (57%), Gaps = 22/308 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           HV VLL++ I  LN     + +D T G  G+S    K  S+   +I  D+D  A+    E
Sbjct: 5   HVSVLLDECINALNIKEDGIYVDCTLGGAGHSSEIVKRLSSDGRLIGFDQDKDALKAAGE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++DYK   +   + F  + D + D    GVDG++ DLGVSS Q+D G+RGFS+ +  PL
Sbjct: 65  RLKDYK-NVTYVHSNFYAIYDVLTDLGIDGVDGILMDLGVSSYQLDNGERGFSYMQDAPL 123

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+     SA ++VN  + ++L RI+   GEEK A RIA  IVK R+    +TT +L 
Sbjct: 124 DMRMNRENEFSAYEIVNTYSEEELYRIIKEYGEEKFAKRIASFIVKNREEKNIETTLELV 183

Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  +   ++    HPA R+FQA+RI VN E+E +++ +    K L  GG + +++FH
Sbjct: 184 EIIKAAIPAKARREGPHPAKRTFQAIRIEVNKELEIISKTILDGVKKLNKGGRMAIITFH 243

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPS-------NAHPAVFQSITKKVVVPTQEDVAFNR 304
           SLEDR+VK  F     K +A     PS       N  P V + I++K +  ++E++ FN 
Sbjct: 244 SLEDRIVKNTF-----KELANPCTCPSEFPVCVCNRKPEV-KLISRKPIEASKEELEFNP 297

Query: 305 RSRSAKLR 312
           RSRSAKLR
Sbjct: 298 RSRSAKLR 305


>gi|223984258|ref|ZP_03634404.1| hypothetical protein HOLDEFILI_01698 [Holdemania filiformis DSM
           12042]
 gi|223963789|gb|EEF68155.1| hypothetical protein HOLDEFILI_01698 [Holdemania filiformis DSM
           12042]
          Length = 312

 Score =  189 bits (481), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 119/302 (39%), Positives = 178/302 (58%), Gaps = 9/302 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H  VLL++ I  LN     + +D T G GG+S    +   N  + A D D  A++   + 
Sbjct: 4   HYSVLLQESIDALNCQSDGIYVDGTLGRGGHSLEIARRLQNGHLYAFDLDEQALAESAQR 63

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           + +   + +L +A F+Q+++ +  +GV   DGVV DLGVSS Q D G+RGFS++    LD
Sbjct: 64  LAEVSGRVTLIRANFAQMREELNARGVMSVDGVVMDLGVSSPQFDDGERGFSYRYDARLD 123

Query: 135 MRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM  S   SA ++VN+ + K+L+ +L   GEE  +  IA  IV+ R   P  TT +L  
Sbjct: 124 MRMDQSQPRSAWNLVNELDEKELSALLWKYGEESYSRPIARQIVRARTLHPIDTTFELVD 183

Query: 194 LIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +I+K +     N + HPA ++FQALRI VN E+E L  GLR+A   +K GG + V++FHS
Sbjct: 184 VIKKALPAKVLNKKGHPAKQTFQALRIAVNGELESLETGLRAAMSLVKPGGRIAVITFHS 243

Query: 253 LEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           LEDR+VK+ F  AS   K      ++PS      F+ +++K ++P +E++A N RS SAK
Sbjct: 244 LEDRIVKETFRQASSVEKTDPRIPLLPSQIRQPDFRLVSRKPILPGEEELAENNRSHSAK 303

Query: 311 LR 312
           LR
Sbjct: 304 LR 305


>gi|148543819|ref|YP_001271189.1| S-adenosyl-methyltransferase MraW [Lactobacillus reuteri DSM 20016]
 gi|184153222|ref|YP_001841563.1| hypothetical protein LAR_0567 [Lactobacillus reuteri JCM 1112]
 gi|227364723|ref|ZP_03848772.1| S-adenosyl-methyltransferase [Lactobacillus reuteri MM2-3]
 gi|325682650|ref|ZP_08162167.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Lactobacillus reuteri MM4-1A]
 gi|263456253|sp|A5VJ28|RSMH_LACRD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263456260|sp|B2G6K1|RSMH_LACRJ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|148530853|gb|ABQ82852.1| S-adenosyl-methyltransferase MraW [Lactobacillus reuteri DSM 20016]
 gi|183224566|dbj|BAG25083.1| conserved hypothetical protein [Lactobacillus reuteri JCM 1112]
 gi|227070182|gb|EEI08556.1| S-adenosyl-methyltransferase [Lactobacillus reuteri MM2-3]
 gi|324978489|gb|EGC15439.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Lactobacillus reuteri MM4-1A]
          Length = 318

 Score =  189 bits (481), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 120/305 (39%), Positives = 180/305 (59%), Gaps = 13/305 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77
           HV VLL++ +A LN  P    +DAT G GG++++  +  +  ++ + D+D  A+   +E 
Sbjct: 6   HVTVLLKEAVAGLNVQPTGTYVDATLGGGGHTQAILQQLVDGHLYSFDQDQTAIDYNKEH 65

Query: 78  MRDYKEQ--FSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           ++   EQ   +L +  F  L+  +     K V+G+++DLGVSS Q D   RGFS+Q   P
Sbjct: 66  LKTAIEQQKLTLVEDNFRNLKAELNSYNVKHVNGILYDLGVSSPQFDDAKRGFSYQHDAP 125

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+    +SA +VVN+   + L +IL   GEEK A  IA  I +RR+ AP +TT +L
Sbjct: 126 LDMRMNQEQKLSAMEVVNEWPYERLVKILYRYGEEKFAKSIARKIEQRRKVAPIKTTFEL 185

Query: 192 SSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I++ +   ++ +  HPA +SFQA+RI VN+E+  L + L  A   L  GG + V++F
Sbjct: 186 VDVIKEGIPAAARRHGGHPAKKSFQAIRIAVNDELGALEESLEQALDLLDVGGRISVITF 245

Query: 251 HSLEDRLVKKFF---ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
            SLEDRLVK  F    S SG V     +IP+   P  F+ I KK +V + E++A N R+ 
Sbjct: 246 QSLEDRLVKTMFREKTSLSGDVPQGLPVIPAGMEPN-FKLINKKPIVASDEELAANHRAH 304

Query: 308 SAKLR 312
           SAKLR
Sbjct: 305 SAKLR 309


>gi|227504684|ref|ZP_03934733.1| S-adenosyl-methyltransferase MraW [Corynebacterium striatum ATCC
           6940]
 gi|227198694|gb|EEI78742.1| S-adenosyl-methyltransferase MraW [Corynebacterium striatum ATCC
           6940]
          Length = 355

 Score =  189 bits (481), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 122/355 (34%), Positives = 199/355 (56%), Gaps = 32/355 (9%)

Query: 2   ESKSCKTMSSAIHHTIGD---HVPVLLEKVIALLNPA-----PGKVILDATFGAGGYSRS 53
           + K+   +++ I++ I +   HVPV+ E++  LL PA        V++D T GAGG++  
Sbjct: 4   QDKNTDNVANNINYDIAENHGHVPVMRERMAQLLAPAIEAAGSNAVVVDGTLGAGGHADF 63

Query: 54  FCKMGSN--VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ-----------DYVP 100
           F +   N  V+ +DRD  +++   E +  ++++F    A F ++            D   
Sbjct: 64  FLRTFPNLHVVGVDRDGASLAAATERLEPFEDRFVGVNARFDEVGGEIARGEGAIFDIAR 123

Query: 101 DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRI 159
           + G+ G +FDLGVSSMQ+D  +RGF+++   PLDMRM  S GI+A+DV+N  +  DL RI
Sbjct: 124 EHGIAGALFDLGVSSMQLDQVERGFAYKTDAPLDMRMDPSHGITAADVLNTYSHGDLARI 183

Query: 160 LGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALR 218
           L   G+E+ A +IA A++K R+  PF  ++ L  L+  T+   ++    HPA R+FQALR
Sbjct: 184 LKTYGDERFAGKIASAVLKEREKEPFSNSERLVELLYATIPAATRRTGGHPAKRTFQALR 243

Query: 219 IFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFAS-RSGKVMAVRHM-I 276
           + VN E+E + Q +     AL  GG  + +S+ SLEDR VK+ FA   + K  A   M +
Sbjct: 244 VEVNRELEAIEQVIPVITDALHVGGRAVFMSYQSLEDRTVKQAFAELAASKTPAGLPMDL 303

Query: 277 PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDDSFVHLP 331
           P  A    F+++T+     + E++  N R+ S ++RA    +ER +E +  +H P
Sbjct: 304 PGTA--PKFKTVTRGAEKASAEEIEENSRAASVRVRA----IER-LEGEPHLHPP 351


>gi|86148532|ref|ZP_01066819.1| S-adenosyl-methyltransferase [Vibrio sp. MED222]
 gi|218708478|ref|YP_002416099.1| S-adenosyl-methyltransferase MraW [Vibrio splendidus LGP32]
 gi|263505899|sp|B7VIZ5|RSMH_VIBSL RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|85833678|gb|EAQ51849.1| S-adenosyl-methyltransferase [Vibrio sp. MED222]
 gi|218321497|emb|CAV17449.1| S-adenosyl-methyltransferase mraW [Vibrio splendidus LGP32]
          Length = 316

 Score =  189 bits (481), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 119/310 (38%), Positives = 174/310 (56%), Gaps = 22/310 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H+ VLL + I  L   P    +D TFG GG+SR+   K+G N  + ++DRDP A++  Q+
Sbjct: 7   HISVLLNESIDGLAIKPDGTYIDGTFGRGGHSRTILSKLGENGRLFSIDRDPQAIAEAQK 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  +F++    FS + +Y         VDGV+ DLGVSS Q+D  +RGFSF K GP
Sbjct: 67  I---DDPRFTIIHGPFSGMAEYAERYDLVGQVDGVLLDLGVSSPQLDDAERGFSFMKDGP 123

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV---KRRQSAPFQTT 188
           LDMRM   +GI  S  + +A++ D+T ++   GE+K A RIA  I+   +  ++ P   T
Sbjct: 124 LDMRMDPTTGIPVSQWLVEADLDDITWVIREFGEDKHARRIAKGIIAYQENEENEPLTRT 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ LI      S   + HPATR+FQA RI++N+E+EE+   L+ A   L   G + V+
Sbjct: 184 GQLAKLISDVAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAASILAPQGRISVI 243

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH------PAVFQSITKKVVVPTQEDVAF 302
           SFHSLEDR+VK+F    S +   V H +P           A  + I  K + P++++V  
Sbjct: 244 SFHSLEDRMVKRFIRKES-QGPQVPHGLPLTEEQIKALGSADLKPIG-KAIKPSKDEVDE 301

Query: 303 NRRSRSAKLR 312
           N RSRS+ LR
Sbjct: 302 NTRSRSSVLR 311


>gi|210608682|ref|ZP_03287959.1| hypothetical protein CLONEX_00138 [Clostridium nexile DSM 1787]
 gi|210152939|gb|EEA83945.1| hypothetical protein CLONEX_00138 [Clostridium nexile DSM 1787]
          Length = 311

 Score =  189 bits (481), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 115/310 (37%), Positives = 176/310 (56%), Gaps = 13/310 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
           +H  VLLE+ +  LN  P  + +D T G GG++   CK  +N    I +D+D  A+    
Sbjct: 4   EHKSVLLEETVNGLNIKPDGIYVDGTLGGGGHAYEVCKHLNNKGRFIGIDQDEAAIEAAG 63

Query: 76  ETMRDYKEQFSLFQATF----SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
             + D+ E+ ++ ++ +    S+LQ+   DK VDG+V DLGVSS Q+D  +RGFS++   
Sbjct: 64  SRLIDFGERVTIVRSNYCDMKSKLQELGIDK-VDGIVLDLGVSSYQLDTAERGFSYRVDA 122

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM     ++A D+VN+ +  DL RI+   GE+K A  IA  IV  R+  P +TT  
Sbjct: 123 PLDMRMDRRQKMTAKDIVNEYSEMDLFRIIRDYGEDKFAKNIAKHIVLEREKGPIETTGQ 182

Query: 191 LSSLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L  +I++ +   F K    HPA R+FQA+RI +N E+E L + L    + L   G + ++
Sbjct: 183 LIEIIKRAIPMKFQKTAG-HPAKRTFQAIRIELNRELEVLRESLDDMIELLNKDGRICII 241

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+VK  F           H  +    + +  + IT+K ++P+ E++  N RS+
Sbjct: 242 TFHSLEDRIVKGIFRKNENPCTCPPHFPVCVCGNESKGRVITRKPILPSAEELEENSRSK 301

Query: 308 SAKLRAGMRT 317
           SAKLR   RT
Sbjct: 302 SAKLRIFERT 311


>gi|332283258|ref|YP_004415169.1| S-adenosyl-methyltransferase MraW [Pusillimonas sp. T7-7]
 gi|330427211|gb|AEC18545.1| S-adenosyl-methyltransferase MraW [Pusillimonas sp. T7-7]
          Length = 357

 Score =  189 bits (481), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 122/325 (37%), Positives = 187/325 (57%), Gaps = 31/325 (9%)

Query: 20  HVPVLLEKVI-ALLNPAPG-----------------KVILDATFGAGGYSR---SFCKMG 58
           H PVLLE  + AL++P  G                  V +D TFG GG+SR   S     
Sbjct: 5   HRPVLLEPTVNALVDPGFGVKGKRSQMRDDSQALADGVFVDGTFGRGGHSRLLLSRLSPD 64

Query: 59  SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSS 115
           + ++  D+DP A++  Q  +R   E+  +  + F+ +   +   G   V+GV+ DLG+SS
Sbjct: 65  AKLVVFDKDPEAIAAAQ-ALRQEDERVVVVHSGFANMPAQLQALGITEVNGVMLDLGISS 123

Query: 116 MQIDCGDRGFSFQKSGPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAH 174
            QID   RGFSF + GPLDMRM + SG++A+  + Q ++ +L  ++   GEE+ A +IA 
Sbjct: 124 PQIDDASRGFSFMREGPLDMRMDTSSGLTAAQWLAQVDIDELKEVIAKYGEERFAFQIAK 183

Query: 175 AIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234
           A++ RR+S P +TT DL+ L+   V   +  + HPATR+FQA+RI++N E++ELA  L +
Sbjct: 184 AVIARRESRPLRTTLDLAELVASVVRTREKGQ-HPATRTFQAIRIYLNQELQELALALAA 242

Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKV 292
             + L  GG L V+SFHSLEDR+VK+    ASR   V A   ++  +    +  S+ +  
Sbjct: 243 VLRVLAPGGRLAVISFHSLEDRMVKQCIAAASRPAAVHARLPILEKDMPQPILNSLGR-- 300

Query: 293 VVPTQEDVAFNRRSRSAKLRAGMRT 317
           ++PT+++   N R+RSA LR   RT
Sbjct: 301 ILPTEQESKENVRARSAVLRVAERT 325


>gi|291571686|dbj|BAI93958.1| S-adenosyl-methyltransferase MraW [Arthrospira platensis NIES-39]
          Length = 312

 Score =  189 bits (481), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 122/311 (39%), Positives = 174/311 (55%), Gaps = 30/311 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQ-- 75
           H+PVL  ++I  L    G   LDAT G GG+++   +   NV   A+DRD  A++  +  
Sbjct: 19  HIPVLGRELIEGLAVQEGGHYLDATVGGGGHTKMIFQGAPNVRVTAIDRDLEAIAAAKSM 78

Query: 76  --ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             +TM +  ++   +   FSQ     P +  DG++ DLGV+S Q+D   RGFSF+  GPL
Sbjct: 79  LMDTMGNCGDRLQFWHGNFSQYPS-SPSQ-FDGIIADLGVNSHQLDTPGRGFSFRHCGPL 136

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+    +SA++++N  + K L  I    GEE+ + RIA  IV++R   PFQTT+ L+
Sbjct: 137 DMRMNPQDPLSAAEIINTWDEKQLADIFYTYGEERLSRRIARQIVEKR---PFQTTEQLA 193

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             I   V    +  RIHPATR FQALRI VN E+  L   L +A   LK GG + ++SFH
Sbjct: 194 GAIANCVPSKYRYGRIHPATRVFQALRIAVNGELSALETFLETAPTWLKPGGRIGIISFH 253

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR VK  F          RH      HP + + +TKK + P  ++++ N R+RSAKL
Sbjct: 254 SLEDRPVKHGF----------RH------HP-LLKVLTKKPITPQPDEISQNPRARSAKL 296

Query: 312 RAGMRTVERSI 322
           R   R    ++
Sbjct: 297 RLAQRNTNETL 307


>gi|289522914|ref|ZP_06439768.1| S-adenosyl-methyltransferase MraW [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
 gi|289503938|gb|EFD25102.1| S-adenosyl-methyltransferase MraW [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
          Length = 300

 Score =  189 bits (481), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 113/309 (36%), Positives = 181/309 (58%), Gaps = 25/309 (8%)

Query: 20  HVPVLLEKVIALLNPAPG-KVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76
           HVPVL  ++I +L+ +   K+++DAT G GG++ +      ++  + LD+D  A+    E
Sbjct: 6   HVPVLTNEIINILSLSDDLKLVVDATVGLGGHAYALLSTFPDIKLLGLDQDETALEIAYE 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            ++ + E+  L ++ F  + D V +      VD ++FDLGVSS+QID  +RGFSF K GP
Sbjct: 66  RLKPFGERVLLVKSNFRFIDDVVKNHFRSVAVDAILFDLGVSSLQIDDEERGFSFNKPGP 125

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK-RRQSAPFQTTQD 190
           +DMRM     ++A D++N   +KDL+ I    GEE+ + +IA AIV+ R Q     +T +
Sbjct: 126 IDMRMDREAKVTAFDIINNYCIKDLSDIFYKYGEERYSRQIAKAIVRYREQKGLIASTAE 185

Query: 191 LSSLIQKTVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L  +I++ +      ++  HPA R FQALRI VN+E+  L  GL+++   L++GG LIV+
Sbjct: 186 LVEIIRRALPAKIQRQMGKHPARRVFQALRIVVNDELGALESGLKNSLGCLRSGGHLIVI 245

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           S+HSLEDR+VK              H         + +  +KK ++P +E++  N RSRS
Sbjct: 246 SYHSLEDRIVK--------------HSFKDWEKEGIGKIFSKKPILPKREEIEGNPRSRS 291

Query: 309 AKLRAGMRT 317
           AKLR  +++
Sbjct: 292 AKLRVLIKS 300


>gi|134298535|ref|YP_001112031.1| S-adenosyl-methyltransferase MraW [Desulfotomaculum reducens MI-1]
 gi|263446306|sp|A4J2A3|RSMH_DESRM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|134051235|gb|ABO49206.1| S-adenosyl-methyltransferase MraW [Desulfotomaculum reducens MI-1]
          Length = 313

 Score =  189 bits (481), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 116/311 (37%), Positives = 174/311 (55%), Gaps = 27/311 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MG--SNVIALDRDPFAVSCGQE 76
           HV VLL + I  L   PG + +D T G  G+S    + +G    ++ +D+DP A++   E
Sbjct: 5   HVSVLLHESIDGLKIKPGGIYVDCTLGGAGHSLEILRRLGPEGKLVGIDQDPAAIANAAE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++++  QF   Q  F Q++  + +     VDG++FDLGVSS Q+D  +RGFS+     L
Sbjct: 65  KLQEFPGQFHAVQRNFFQIKQILREMAISEVDGILFDLGVSSYQLDTPERGFSYMHDAEL 124

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     ISA ++VN  + ++L  I+   GE++ A RIA  IVK R+     TT +L 
Sbjct: 125 DMRMGPDQTISAKELVNDISEEELATIIRRYGEDRWAKRIASFIVKERKKRAIHTTGELV 184

Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  V   ++    HPA R+FQALRI VNNE+E L Q ++ A  ALK+GG + V++FH
Sbjct: 185 DIIKAAVPVGARREGPHPAKRTFQALRIAVNNELEILEQTMKDAVTALKSGGRISVITFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV----------FQSITKKVVVPTQEDVA 301
           SLEDR++K  F   +          P    PA            + +T K + P++E++ 
Sbjct: 245 SLEDRIIKDTFKELAN---------PCTCPPAFPVCACGKQPQIKIVTGKPIQPSKEELE 295

Query: 302 FNRRSRSAKLR 312
            N R+RSAKLR
Sbjct: 296 HNPRARSAKLR 306


>gi|62260134|gb|AAX77882.1| unknown protein [synthetic construct]
          Length = 340

 Score =  189 bits (481), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 121/312 (38%), Positives = 182/312 (58%), Gaps = 22/312 (7%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVS 72
           H +  H  VLL++ I  LN  P  + +DATFG GG+S++         +IA D+D  A+S
Sbjct: 23  HMLEMHYSVLLQESINDLNINPQGIYIDATFGRGGHSKAILNRLTTGRLIAFDKDLDAIS 82

Query: 73  CGQETMRDYKEQFSLFQ---ATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGF 125
             +E       QFS F+   A+F+ + DY         +DG++ DLGVSS Q+D   RGF
Sbjct: 83  YARENF-----QFSNFEIVHASFASIYDYCLQHSLLGKIDGIIMDLGVSSPQLDNAARGF 137

Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSA 183
           SF  +GPLDMRM  S GI+AS  + + +V DL+ I  + GEE+ A +IA  I    +Q+ 
Sbjct: 138 SFTHNGPLDMRMDVSKGITASQALEELSVDDLSYIFKVYGEERFAKKIALRIKDYIQQNG 197

Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
             + T +L+ LI  T+   K  + +PATR FQALRI+VNNE+++L   L +    +K+GG
Sbjct: 198 SIRKTLELAELILATI--GKKEKKNPATRCFQALRIYVNNELKDLEALLENILAVIKSGG 255

Query: 244 LLIVVSFHSLEDRLVKKFFASR---SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300
            +  +SFHSLEDR+VK+ F++      ++  +  M+P ++     + ITKK     ++++
Sbjct: 256 RIAAISFHSLEDRIVKQKFSALINPKQELNRITKMLPQDSSQIKLKWITKKSKA-NEDEL 314

Query: 301 AFNRRSRSAKLR 312
             N RSRSA LR
Sbjct: 315 NQNVRSRSAILR 326


>gi|167035511|ref|YP_001670742.1| S-adenosyl-methyltransferase MraW [Pseudomonas putida GB-1]
 gi|262825111|sp|B0KFT4|RSMH_PSEPG RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|166861999|gb|ABZ00407.1| S-adenosyl-methyltransferase MraW [Pseudomonas putida GB-1]
          Length = 315

 Score =  189 bits (481), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 122/307 (39%), Positives = 177/307 (57%), Gaps = 18/307 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMG--SNVIALDRDPFAVSCGQ 75
           +H+ VLL++ +  L        LD TFG GG+SR    K+G    ++  D+DP A++ GQ
Sbjct: 8   NHITVLLDEAVEALALRADGCYLDGTFGRGGHSRLILSKLGPQGRLLGFDKDPQAIATGQ 67

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
             +     +F + Q +F++L   V ++G    V GV+ DLGVSS Q+D  +RGFSF   G
Sbjct: 68  -ALAAEDGRFVIVQRSFAELGAEVAERGLHGKVSGVLLDLGVSSPQLDDPERGFSFLNDG 126

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+   GISA++ +  A V+++ R+    GEE+ A R+A A+V+RR+  PF  T D
Sbjct: 127 PLDMRMNPGQGISAAEFIATAPVEEIARVFKEYGEERFAGRMARAVVERREKQPFTRTAD 186

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ ++ K    +     +PATR+FQ LRI VNNE+ +L  GL +A  AL+ GG L V+SF
Sbjct: 187 LAEVL-KVANPAWEKGKNPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLAVISF 245

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITK---KVVVPTQEDVAFNRR 305
           HSLEDR+VK F       V      +P N      VF+   K   K    ++ ++  N R
Sbjct: 246 HSLEDRIVKLFMRKL---VKGEADNLPRNLPVQHKVFEPKIKLIGKAQFASEAELKANPR 302

Query: 306 SRSAKLR 312
           SRSA +R
Sbjct: 303 SRSAVMR 309


>gi|297268190|ref|XP_002799639.1| PREDICTED: putative S-adenosyl-L-methionine-dependent
           methyltransferase METT5D1-like isoform 2 [Macaca
           mulatta]
          Length = 452

 Score =  189 bits (481), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 112/295 (37%), Positives = 161/295 (54%), Gaps = 52/295 (17%)

Query: 20  HVPVLLEKVIALLNPAPGKV---------------------------------ILDATFG 46
           H+PV++++V+  L+P  G++                                  LD TFG
Sbjct: 72  HIPVMVDEVVHCLSPQKGQISFMCIVLFAYPNNLVMWTRMVHLHTRKLRLREIFLDMTFG 131

Query: 47  AGGYSRSFCKMGSNVI--ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV 104
           +GG++++  +  S+++  ALDRDP A +  +     Y +Q       FSQ +  +   GV
Sbjct: 132 SGGHTKAILQKESDIVLYALDRDPTAYALAEHLSELYPKQIRAVLGQFSQAEALLTKAGV 191

Query: 105 -----DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI----SASDVVNQANVKD 155
                DGV+ DLG SSMQ+D  +RGFS +K GPLDMRM         +A+DVVN  +   
Sbjct: 192 QPGTFDGVLMDLGCSSMQLDTPERGFSLRKDGPLDMRMDGGRYPDMPTAADVVNALDQPA 251

Query: 156 LTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ-----KTVYFSKN---NRI 207
           L  IL   GEEK A +IA AIV+ R   P   TQ L+S++        +Y  K+      
Sbjct: 252 LASILRTYGEEKHARKIASAIVQARSIYPITRTQQLASIVAGAFPPSAIYARKDLLQRST 311

Query: 208 HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF 262
           H AT++FQALRIFVNNE+ EL  GL++A+K L+ GG L+ +SFHSLEDR++K+F 
Sbjct: 312 HIATKTFQALRIFVNNELNELYTGLKTAQKFLRPGGRLVALSFHSLEDRIIKRFL 366


>gi|261867472|ref|YP_003255394.1| S-adenosyl-methyltransferase MraW [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261412804|gb|ACX82175.1| S-adenosyl-methyltransferase MraW [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 322

 Score =  189 bits (481), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 129/318 (40%), Positives = 180/318 (56%), Gaps = 28/318 (8%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQ 75
           +H+ VLL + +  L      + +D TFG GG+SR   S   +   +IA+DRDP AV+  Q
Sbjct: 11  EHLTVLLHETVDGLALKENGIYIDGTFGRGGHSRLILSQLSVNGKLIAIDRDPQAVAEAQ 70

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +       +F +   TFS++       G    VDG++ DLGVSS Q+D  +RGFSF K G
Sbjct: 71  KIQ---DSRFHIEHNTFSEILPICEKFGLVGKVDGILLDLGVSSPQLDDAERGFSFMKDG 127

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP------ 184
           PLDMRM  S GISA++ + Q + +DL  +L   GEE+ A RIA  IV   +SA       
Sbjct: 128 PLDMRMDSSKGISAAEWLAQVSEQDLAWVLKTFGEERFAKRIAKVIVDYNKSAVQNGGEF 187

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
              T  L+ LI + V F K+   HPATRSFQA+RI++N E++EL   L+SA   L   G 
Sbjct: 188 LARTLQLAELITQAVPF-KDKYKHPATRSFQAIRIYINAELDELENVLQSALSVLAPKGR 246

Query: 245 LIVVSFHSLEDRLVKKFFASRS-GKV----MAVRH-MIPSNAHPAVFQSITKKVVVPTQE 298
           L V+SFHSLEDR+VK+F   +S G+V    + +R   I  N    V      K ++P++ 
Sbjct: 247 LSVISFHSLEDRMVKQFMRKQSQGEVIPKGLPLREDQIQRNRRLKVI----GKAIMPSEA 302

Query: 299 DVAFNRRSRSAKLRAGMR 316
           ++  N R+RSA LR   R
Sbjct: 303 EIVQNPRARSAVLRIAER 320


>gi|311068034|ref|YP_003972957.1| S-adenosyl-methyltransferase MraW [Bacillus atrophaeus 1942]
 gi|310868551|gb|ADP32026.1| S-adenosyl-methyltransferase MraW [Bacillus atrophaeus 1942]
          Length = 311

 Score =  189 bits (481), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 116/303 (38%), Positives = 174/303 (57%), Gaps = 11/303 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H  VLL + +  L+  P    +D T G  G+S    +  S    +IA D+D  A+   +E
Sbjct: 4   HKTVLLRETVDGLDIKPDGTYVDCTLGGAGHSTYLLQQLSEKGRLIAFDQDDTALQHAKE 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  YK Q  L ++ F  L+D + ++G+   DGV+FDLGVSS Q+D  +RGFS+    PL
Sbjct: 64  KLSGYKGQLILIKSNFRYLKDCLNEQGITEIDGVLFDLGVSSPQLDTPERGFSYHHDAPL 123

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  S  ++A +VVN+   +DL RI    GEEK + +IA  I + R  +P QTT  L 
Sbjct: 124 DMRMDQSAPLTAKEVVNEWRYEDLVRIFFRYGEEKFSKQIARKIEEARSKSPIQTTGQLV 183

Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            LI+  +   ++ +  HPA R FQA+RI VN+E++   + L  A + LK GG + V++FH
Sbjct: 184 DLIKDAIPAPARRSGGHPAKRVFQAIRIAVNDELKVFEEALLQAIEVLKPGGRVSVITFH 243

Query: 252 SLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+ K  F   S   ++     +IP    P + + IT+K +  ++E++  N R+RSA
Sbjct: 244 SLEDRICKATFKEMSSLPELPPGLPVIPEEFEPEL-KLITRKPITASEEELEENNRARSA 302

Query: 310 KLR 312
           KLR
Sbjct: 303 KLR 305


>gi|210134911|ref|YP_002301350.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori P12]
 gi|226709920|sp|B6JLU2|RSMH_HELP2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|210132879|gb|ACJ07870.1| S-adenosyl-methyltransferase [Helicobacter pylori P12]
          Length = 308

 Score =  189 bits (480), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 120/302 (39%), Positives = 181/302 (59%), Gaps = 16/302 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVSCGQET 77
           H  VLL++V+    P    V++D T G GG+S++    K    +I +D+D FA    +E 
Sbjct: 8   HQSVLLQEVLQAFAPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFAQEIAKER 67

Query: 78  MRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++ ++ +++L    F++  ++ +   G  + GV+ DLGVSS+Q+D  +RGF+F  S  LD
Sbjct: 68  LKAFEGRYNLLSGGFAKRFKEALEMHGERIKGVLVDLGVSSLQLDDDNRGFNFH-SHALD 126

Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM   S ++A  V+N  +V  L +I    GE K+  +IAH I +RR   PF+  +DLS 
Sbjct: 127 MRMDLESDLNAQKVINSYSVVALEKIFRDYGEIKEYKKIAHKIAERRAKKPFKDAKDLSD 186

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
            +     FSKN +IHPAT  FQA+RI VN+E+EEL + L+ A + LK G +L V+SFHSL
Sbjct: 187 FLSS---FSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCA-RNLK-GAILCVISFHSL 241

Query: 254 EDRLVKKFFASRSGKVM---AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           ED LVK  F   +   +   +      SN H A+   +TKK ++P+ E++  NRRSRSAK
Sbjct: 242 EDALVKNAFKDYAKNCICDPSSFKCTCSNNH-ALGTILTKKPIIPSPEEIKNNRRSRSAK 300

Query: 311 LR 312
           +R
Sbjct: 301 MR 302


>gi|257463543|ref|ZP_05627936.1| methyltransferase [Fusobacterium sp. D12]
 gi|317061098|ref|ZP_07925583.1| S-adenosyl-methyltransferase mraW [Fusobacterium sp. D12]
 gi|313686774|gb|EFS23609.1| S-adenosyl-methyltransferase mraW [Fusobacterium sp. D12]
          Length = 313

 Score =  189 bits (480), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 112/302 (37%), Positives = 178/302 (58%), Gaps = 12/302 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+PVL E+ +  L   P  + +D T G G +S    K  S    +I++D+D  A++  ++
Sbjct: 9   HIPVLYEETLENLLWNPDGIYIDCTLGGGSHSEGILKRLSEKGRLISIDQDASAIAFCKK 68

Query: 77  TMRDYKEQFSLFQATFSQLQ--DYVP--DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            +  Y +Q+S+FQ  F  +    Y+   DK VDG++ D+GVSS Q+D G+RGFS++    
Sbjct: 69  RLEKYGKQWSVFQNNFENIDIVSYLAGLDK-VDGILMDIGVSSTQLDDGERGFSYRYDAK 127

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+    +SA +VVNQ   +DL RIL   GEE+ A +IA  I + R+  P +TT +L
Sbjct: 128 LDMRMNAEQELSAYEVVNQYAEQDLVRILFEYGEERYAKKIAAFICENRKEKPIETTGEL 187

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            ++I++   + +    HPA ++FQA+R+ VN E+E L   ++ + + LK  G L +++FH
Sbjct: 188 VAIIKRA--YPERAAKHPAKKTFQAIRMEVNRELEVLETAIQKSVELLKPKGRLAIITFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDRLVK  F   +        + +      A  + ITKK ++P++E+V  N R+ S+K
Sbjct: 246 SLEDRLVKTVFKDLARACKCPPELPVCVCGGKAKVKIITKKPILPSEEEVGKNNRAHSSK 305

Query: 311 LR 312
           LR
Sbjct: 306 LR 307


>gi|167626453|ref|YP_001676953.1| S-adenosyl-methyltransferase MraW [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|254813209|sp|B0TZ13|RSMH_FRAP2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|167596454|gb|ABZ86452.1| S-adenosylmethionine-dependent methyltransferase [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
          Length = 308

 Score =  189 bits (480), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 120/304 (39%), Positives = 177/304 (58%), Gaps = 16/304 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN-VIALDRDPFAVSCGQET 77
           H  VLL++ IA LN  P  + +DATFG GG+S++   K+ S  +IA D+D  A+      
Sbjct: 5   HFSVLLQESIADLNINPEGIYIDATFGRGGHSKAILDKLTSGRLIAFDKDLDAIDYATHN 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++  + F +  A+F+ + DY         VDG++ DLGVSS Q+D  +RGFSF   GPL
Sbjct: 65  FQN--DNFEMVHASFTYIYDYCLQHNLLGRVDGIIMDLGVSSPQLDNANRGFSFTHDGPL 122

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTTQDL 191
           DMRM  S G++AS  + + +V +LT I  + GEE+ A +IA  I     ++    TT  L
Sbjct: 123 DMRMDISKGLTASQALEELSVDELTYIFKVYGEERFAKKIALRIKGYIAENGSITTTHQL 182

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI+ T+   K  + +PATR FQALRI+VN+E+++L   L S    +K GG +  +SFH
Sbjct: 183 AELIRATI--GKREKKNPATRCFQALRIYVNDELKDLEILLESILDVIKKGGRVAAISFH 240

Query: 252 SLEDRLVKKFFASR---SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SLEDR+VK+ F S      +   +  M+P +      + ITKK     Q++++ N RSRS
Sbjct: 241 SLEDRIVKQKFTSLINPKQETNRIAKMLPQDNSQVKMKWITKK-AKANQDELSQNVRSRS 299

Query: 309 AKLR 312
           A LR
Sbjct: 300 AILR 303


>gi|241895696|ref|ZP_04782992.1| S-adenosyl-methyltransferase [Weissella paramesenteroides ATCC
           33313]
 gi|241871063|gb|EER74814.1| S-adenosyl-methyltransferase [Weissella paramesenteroides ATCC
           33313]
          Length = 314

 Score =  189 bits (480), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 118/304 (38%), Positives = 172/304 (56%), Gaps = 12/304 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           HV VLL + I  LN  P  V +DAT G GG+S+      S   + + D+D  A++  QE 
Sbjct: 6   HVTVLLREAIDGLNVQPDGVYVDATLGGGGHSKLLASRLSTGKLWSFDQDETAITYNQEH 65

Query: 78  MRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + D     + +  Q  F  L D +  + V   DG+V+DLGVSS Q D G RGFS+    P
Sbjct: 66  LADEIAAGKVAFIQDNFRHLHDALMAEDVSTIDGIVYDLGVSSPQFDDGQRGFSYNYDAP 125

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S  ++A  VVN+ +  +L RI    GEEK A +IA  I   R+  P +TT +L
Sbjct: 126 LDMRMDQSQSLTARTVVNEWSFHELLRIFSRYGEEKFAKQIARKIEHEREIKPIETTFEL 185

Query: 192 SSLIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
            ++I+ ++  +   +  HPA R+FQA+RI VN+E+  + + L  A   L   G + V++F
Sbjct: 186 VNIIKDSIPAAARRKGGHPAKRTFQAIRIAVNDELGAVEESLAQALDMLNVHGRIAVITF 245

Query: 251 HSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           HSLEDRLVK  F  +     + A   +IP    P  F+ + +K ++P+ E++A NRR+ S
Sbjct: 246 HSLEDRLVKTMFKEKVSIPDLPAGLPIIPEEMQPD-FKLVVRKPILPSDEELATNRRAHS 304

Query: 309 AKLR 312
           AKLR
Sbjct: 305 AKLR 308


>gi|15645330|ref|NP_207501.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori 26695]
 gi|8134812|sp|O25411|RSMH_HELPY RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|2313835|gb|AAD07761.1| conserved hypothetical protein [Helicobacter pylori 26695]
          Length = 308

 Score =  189 bits (480), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 120/304 (39%), Positives = 181/304 (59%), Gaps = 20/304 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVSCGQET 77
           H  VLL++V+    P    V++D T G GG+S++    K    +I +D+D FA    +E 
Sbjct: 8   HQSVLLQEVLQAFMPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFAQEIAKER 67

Query: 78  MRDYKEQFSLFQATFSQ-----LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           ++ ++ +++L    F++     L+ +  +K + GV+ DLGVSS+Q+D  +RGF+F  S  
Sbjct: 68  LKAFEGRYNLLSGGFAKRFKEALETH--NKEIKGVLVDLGVSSLQLDDDNRGFNFH-SHT 124

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM   S ++A  V+N   +  L +I    GE K+  +IAH I +RR   PF+  +DL
Sbjct: 125 LDMRMDLESELNAQKVINSYPIVALEKIFRDYGEIKEYKKIAHKIAERRAKKPFKNAKDL 184

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           S  +     FSKN +IHPAT  FQA+RI VN+E+EEL + L+ A + LK G +L V+SFH
Sbjct: 185 SEFLSS---FSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCA-RNLK-GAILCVISFH 239

Query: 252 SLEDRLVKKFFASRSGKVM---AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SLED LVK  F   +   +   +      SN H A+ + +TKK + P+ E++  NRRSRS
Sbjct: 240 SLEDALVKNAFKDYAKNCICDPSSFKCACSNNH-ALGEILTKKPITPSPEEIKNNRRSRS 298

Query: 309 AKLR 312
           AK+R
Sbjct: 299 AKMR 302


>gi|167966821|ref|ZP_02549098.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis
           H37Ra]
 gi|215411891|ref|ZP_03420665.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis
           94_M4241A]
 gi|215427543|ref|ZP_03425462.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis T92]
 gi|215446396|ref|ZP_03433148.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis T85]
          Length = 331

 Score =  189 bits (480), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 116/320 (36%), Positives = 176/320 (55%), Gaps = 20/320 (6%)

Query: 21  VPVLLEKVIALLNPAPGK--------VILDATFGAGGYSRSFCK--MGSNVIALDRDPFA 70
           +PVL ++   LL PA  +        V+LDAT GAGG++  F +   G  +I LDRDP A
Sbjct: 1   MPVLAQRCFELLTPALTRYYPDGSQAVLLDATIGAGGHAERFLEGLPGLRLIGLDRDPTA 60

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSSMQIDCGDRG 124
           +   +  +  + ++ +L    +  L   + + G      VDG++FDLGVSSMQ+D  +RG
Sbjct: 61  LDVARSRLVRFADRLTLVHTRYDCLGAALAESGYAAVGSVDGILFDLGVSSMQLDRAERG 120

Query: 125 FSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           F++    PLDMRM   + ++A+D+VN  +   L  IL   GEE+ A RIA  IV+RR   
Sbjct: 121 FAYATDAPLDMRMDPTTPLTAADIVNTYDEAALADILRRYGEERFARRIAAGIVRRRAKT 180

Query: 184 PFQTTQDLSSLIQKTVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
           PF +T +L +L+ + +  +   R+  HPA R+FQALRI VN+E+E L   + +A  AL  
Sbjct: 181 PFTSTAELVALLYQAIP-APARRVGGHPAKRTFQALRIAVNDELESLRTAVPAALDALAI 239

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           GG + V+++ SLEDR+VK+ FA            +    H   F+S+T      +  ++ 
Sbjct: 240 GGRIAVLAYQSLEDRIVKRVFAEAVASATPAGLPVELPGHEPRFRSLTHGAERASVAEIE 299

Query: 302 FNRRSRSAKLRAGMRTVERS 321
            N RS   +LRA  R   R+
Sbjct: 300 RNPRSTPVRLRALQRVEHRA 319


>gi|261405657|ref|YP_003241898.1| S-adenosyl-methyltransferase MraW [Paenibacillus sp. Y412MC10]
 gi|261282120|gb|ACX64091.1| S-adenosyl-methyltransferase MraW [Paenibacillus sp. Y412MC10]
          Length = 317

 Score =  189 bits (480), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 114/309 (36%), Positives = 174/309 (56%), Gaps = 16/309 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+ VL ++    L   P  + +D T G  G+S       S+   +IALD+D +A++  +E
Sbjct: 4   HITVLKQEATEGLRIKPDGIYVDCTLGGAGHSSLIASQLSSEGRLIALDQDDWALNNARE 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYV------PDKG---VDGVVFDLGVSSMQIDCGDRGFSF 127
            M+ Y ++ SL +  F  L++ +       + G   VDG++FDLGVSS Q D G+RGFS+
Sbjct: 64  AMKPYADRISLVKTNFRDLEEVLRREVGAGENGQPQVDGILFDLGVSSPQFDEGERGFSY 123

Query: 128 QKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
               PLDMRM  S  ++A+ +VN+   +++ RIL   GEEK + RIA  IV+RR  +P Q
Sbjct: 124 NHDAPLDMRMDQSAELTAAKIVNEWPEQEIARILYQYGEEKFSRRIAKVIVERRAQSPIQ 183

Query: 187 TTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           TT +L  +I++ +   ++    HPA RSFQA RI VN+E+      L  A + L  GG +
Sbjct: 184 TTGELVEMIKEGIPAAARRTGGHPAKRSFQAFRIAVNDELGAFEDALHQAVRCLAPGGRI 243

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            V++FHSLEDR+ K+ F S   K        M          + + +K ++P+ E++  N
Sbjct: 244 SVITFHSLEDRICKQIFNSYIPKCTCPPDFPMCVCGGGQGDLKLVNRKPLIPSAEEIESN 303

Query: 304 RRSRSAKLR 312
            R+RSAKLR
Sbjct: 304 PRARSAKLR 312


>gi|86606931|ref|YP_475694.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. JA-3-3Ab]
 gi|123505404|sp|Q2JSF0|RSMH_SYNJA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|86555473|gb|ABD00431.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. JA-3-3Ab]
          Length = 309

 Score =  189 bits (480), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 127/313 (40%), Positives = 170/313 (54%), Gaps = 35/313 (11%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETM 78
           H  VL E V+A L P  G   LD T G GG+S +  + G++ V+ LDRDP A+   Q  +
Sbjct: 16  HESVLTEAVVAYLQPQQGGAFLDVTLGGGGHSLALLQRGADRVVGLDRDPTALQAAQARL 75

Query: 79  RDYK---EQFSLFQATFS----QLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSF 127
                   +  L+   F+    Q   +  ++G     DG+V DLGVSS Q+DC +RGFSF
Sbjct: 76  AAAGIPGNRLQLWHLNFADFDLQRHGFRDERGQGIPFDGIVADLGVSSPQLDCPERGFSF 135

Query: 128 QKSGPLDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           +  GPLDMRM  +    +A+D VN+  V+DL  I    GEE+ A RIAH I + R   P 
Sbjct: 136 RAEGPLDMRMDPTADQETAADWVNRRPVEDLIDIFVRYGEERFARRIAHHIERSR---PL 192

Query: 186 QTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
            TT  L+ ++ + V   ++  RIHPATR FQALRI VN E+E L   L  A   LK GG 
Sbjct: 193 FTTTQLAHVVWQAVPPAARRGRIHPATRIFQALRIAVNRELEALETLLAQAPNWLKPGGR 252

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           L V+SFHSLEDRLVK  F +                    +Q +T K + P++ +   N 
Sbjct: 253 LAVISFHSLEDRLVKWAFRTDP-----------------RWQVLTPKPLCPSELEQQRNS 295

Query: 305 RSRSAKLRAGMRT 317
           R+RSAKLR   R+
Sbjct: 296 RARSAKLRVAARS 308


>gi|119512962|ref|ZP_01632023.1| S-adenosyl-methyltransferase [Nodularia spumigena CCY9414]
 gi|119462375|gb|EAW43351.1| S-adenosyl-methyltransferase [Nodularia spumigena CCY9414]
          Length = 302

 Score =  189 bits (480), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 118/301 (39%), Positives = 174/301 (57%), Gaps = 26/301 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           HVPVL ++V+  L   PG   LDAT G GG+SR   +  ++V   A+D+D  A+   Q+ 
Sbjct: 15  HVPVLSQEVVEGLAVRPGGHYLDATVGGGGHSRLILEAATDVRLTAIDQDEDALGAAQKH 74

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
           + ++ ++     + FS  + Y P+   DG++ DLGVSS  +D  +RGFSF+ +  LDMRM
Sbjct: 75  LAEFGDRVEFIHSNFSAYK-YSPNT-FDGILADLGVSSYHLDQPERGFSFRHAANLDMRM 132

Query: 138 SCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
           +    ++A+DV+N+ +  +L  I    GEE+ + RIA  IV++R   PF+TT +L+  I 
Sbjct: 133 NQQQSLTAADVINEWDEAELADIFFKYGEERLSRRIARRIVEKR---PFETTTELAEAIA 189

Query: 197 KTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
            +V    +  RIHPATR FQALRI VN+E++ L   L  A  AL  GG + ++SFHSLED
Sbjct: 190 YSVPRQYRYGRIHPATRVFQALRIVVNDELKALETFLDQAPNALVPGGRIAIISFHSLED 249

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           R VK    + S                 + + +TKK +   +E++A N RSRSAKLR   
Sbjct: 250 RPVKHGLRNSS-----------------LLKVLTKKPITAKEEELANNPRSRSAKLRIAQ 292

Query: 316 R 316
           R
Sbjct: 293 R 293


>gi|293391350|ref|ZP_06635684.1| S-adenosyl-methyltransferase MraW [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951884|gb|EFE02003.1| S-adenosyl-methyltransferase MraW [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 322

 Score =  189 bits (480), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 129/318 (40%), Positives = 180/318 (56%), Gaps = 28/318 (8%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQ 75
           +H+ VLL + +  L      + +D TFG GG+SR   S   +   +IA+DRDP AV+  Q
Sbjct: 11  EHLTVLLHETVDGLALKENGIYIDGTFGRGGHSRLILSQLSVNGKLIAIDRDPQAVAEAQ 70

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +       +F +   TFS++       G    VDG++ DLGVSS Q+D  +RGFSF K G
Sbjct: 71  KIQ---DPRFHIEHNTFSEILPICEKFGLVGKVDGILLDLGVSSPQLDDAERGFSFMKDG 127

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP------ 184
           PLDMRM  S GISA++ + Q + +DL  +L   GEE+ A RIA  IV   +SA       
Sbjct: 128 PLDMRMDSSKGISAAEWLAQVSEQDLAWVLKTFGEERFAKRIAKVIVDYNKSAVQNGGEF 187

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
              T  L+ LI + V F K+   HPATRSFQA+RI++N E++EL   L+SA   L   G 
Sbjct: 188 LARTLQLAELIAQAVPF-KDKYKHPATRSFQAIRIYINAELDELENVLQSALSVLAPKGR 246

Query: 245 LIVVSFHSLEDRLVKKFFASRS-GKV----MAVRH-MIPSNAHPAVFQSITKKVVVPTQE 298
           L V+SFHSLEDR+VK+F   +S G+V    + +R   I  N    V      K ++P++ 
Sbjct: 247 LSVISFHSLEDRMVKQFMRKQSQGEVIPKGLPLREDQIQRNRRLKVI----GKAIMPSEA 302

Query: 299 DVAFNRRSRSAKLRAGMR 316
           ++  N R+RSA LR   R
Sbjct: 303 EIVQNPRARSAVLRVAER 320


>gi|319897403|ref|YP_004135600.1| s-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Haemophilus influenzae F3031]
 gi|317432909|emb|CBY81275.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Haemophilus influenzae F3031]
          Length = 321

 Score =  189 bits (480), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 127/318 (39%), Positives = 181/318 (56%), Gaps = 30/318 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76
           H+ VLL + +  L      + +D TFG GG+SR   S       +IA+DRDP A++   +
Sbjct: 12  HITVLLHEAVNGLALKENGIYIDGTFGRGGHSRFILSQLSFNGRLIAVDRDPRAIAEAHK 71

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            ++D +  F +   +FS + + + DK      +DG++ DLGVSS Q+D  +RGFSF K G
Sbjct: 72  -IQDLR--FQIEHNSFSHIPE-ICDKLNLVGKIDGILLDLGVSSPQLDEAERGFSFMKDG 127

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ- 189
           PLDMRM  + G+SA + + Q +++DLT +L   GEE+ A RIA AIV   +SA   +T+ 
Sbjct: 128 PLDMRMDTTQGLSAEEWLKQVSIEDLTWVLKTFGEERFAKRIATAIVDFNKSAVKNSTEF 187

Query: 190 -----DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
                 L+ LI + V F K+   HPATRSFQA+RIF+N+E++EL   L SA   L   G 
Sbjct: 188 LSRTSQLAELISQAVPF-KDKHKHPATRSFQAIRIFINSELDELESLLNSALDMLAPEGR 246

Query: 245 LIVVSFHSLEDRLVKKFFASRSG-----KVMAVRH-MIPSNAHPAVFQSITKKVVVPTQE 298
           L ++SFHSLEDR+VK F   +S      K + +R   I  N        I  K + P+  
Sbjct: 247 LSIISFHSLEDRMVKHFMKKQSKGEDIPKGLPLREDQIQRNQK----LRIIGKAIQPSDA 302

Query: 299 DVAFNRRSRSAKLRAGMR 316
           ++  N RSRSA LR   R
Sbjct: 303 EIQANPRSRSAILRVAER 320


>gi|325265585|ref|ZP_08132276.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Kingella
           denitrificans ATCC 33394]
 gi|324982933|gb|EGC18554.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Kingella
           denitrificans ATCC 33394]
          Length = 323

 Score =  189 bits (480), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 120/312 (38%), Positives = 175/312 (56%), Gaps = 20/312 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQ 75
           +H+ VLL + +  LN  P  + +D TFG GG+SR   S       +I  D+DP A++  Q
Sbjct: 7   EHITVLLNEAVDALNVRPSGIYVDGTFGRGGHSRLILSRLNEQGRLIVFDKDPAAIAVAQ 66

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E  R   ++ S+F   FS       + G+   DG +FDLG+SS QID   RGFSF+   P
Sbjct: 67  ELARQ-DQRVSVFHQGFSHFDAACTELGISQIDGALFDLGISSPQIDDASRGFSFRFDAP 125

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G SA++ +  A+ +++  ++   GEE+ + +IA AIV +R  AP  TT  L
Sbjct: 126 LDMRMDTTRGESAAEWLMHADEQEIHEVIKNYGEERFSRQIARAIVAKRIEAPIHTTGQL 185

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + +  + V  S+    HPATR+FQA+RI++N E++E+AQ L      L   G L V++FH
Sbjct: 186 AEIAAQCVR-SREKGQHPATRTFQAIRIYINRELDEVAQVLPQVTTRLNTHGRLAVIAFH 244

Query: 252 SLEDRLVKKFFASRSG-----KVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           SLEDR+VK+F    S      K  AVR   +P    P +   I  K +    E++ +N R
Sbjct: 245 SLEDRIVKQFMREYSTHAPLPKWAAVREADLPK---PPL--RIVGKPIKAGAEELNYNPR 299

Query: 306 SRSAKLRAGMRT 317
           +RSA LR   RT
Sbjct: 300 ARSAILRVAERT 311


>gi|218235035|ref|YP_002368718.1| S-adenosyl-methyltransferase MraW [Bacillus cereus B4264]
 gi|263446873|sp|B7H6Q4|RSMH_BACC4 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|218162992|gb|ACK62984.1| S-adenosyl-methyltransferase MraW [Bacillus cereus B4264]
          Length = 310

 Score =  189 bits (480), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 115/303 (37%), Positives = 173/303 (57%), Gaps = 11/303 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HV VLL++ +  LN  P    +D T G GG+S         G  +IA D+D  A+   +E
Sbjct: 4   HVTVLLKETVDGLNIKPDGTYVDCTLGGGGHSSYLLSQLTEGGKLIAFDQDEIAIQNAKE 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
               Y EQF   ++ F  L + + + G   VDG++FDLGVSS Q+D  +RGFS+    PL
Sbjct: 64  KFSSYGEQFITVKSNFRYLAEKLQEIGITEVDGILFDLGVSSPQLDTPERGFSYHHDAPL 123

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     ++A DVVN  + + L RI    GEEK + +IA  I   R++   +TT +L 
Sbjct: 124 DMRMDQDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTGELV 183

Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            LI++ +   ++    HPA R FQA+RI VN+E++   + L SA + +K GG + V++FH
Sbjct: 184 ELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRVSVITFH 243

Query: 252 SLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+ K  F   S + ++     +IP    P + + IT+K ++P+  ++  N R+RSA
Sbjct: 244 SLEDRICKTTFKRNSTTPQLPPGLPIIPDEFKPKL-KLITRKPILPSDIELEENNRARSA 302

Query: 310 KLR 312
           KLR
Sbjct: 303 KLR 305


>gi|325275020|ref|ZP_08141013.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas sp. TJI-51]
 gi|324099848|gb|EGB97701.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas sp. TJI-51]
          Length = 315

 Score =  189 bits (480), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 120/309 (38%), Positives = 179/309 (57%), Gaps = 22/309 (7%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMG--SNVIALDRDPFAVSCGQ 75
           +H+ VLL++ +  L        LD TFG GG+SR    K+G    ++  D+DP A++ GQ
Sbjct: 8   NHITVLLDEAVEALALRADGCYLDGTFGRGGHSRLILSKLGPQGRLLGFDKDPQAIATGQ 67

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
             +     +F + Q +F++L   V ++G    V GV+ DLGVSS Q+D  +RGFSF   G
Sbjct: 68  -ALAAEDGRFVIVQRSFAELGAEVAERGLHGKVSGVLLDLGVSSPQLDDPERGFSFLNDG 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+   G+SA++ +  A V+++ R+    GEE+ A R+A A+V+RR+  PF  T D
Sbjct: 127 PLDMRMNPDQGVSAAEFIATAPVEEIARVFKEYGEERFAGRMARAVVERREKQPFTRTAD 186

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ ++ K    +     +PATR+FQ LRI VNNE+ +L  GL +A  AL+ GG L V+SF
Sbjct: 187 LAEVL-KVANPAWEKGKNPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLAVISF 245

Query: 251 HSLEDRLVKKFF-------ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
           HSLEDR+VK F        A    + + V+H +     P V   +  K    ++ ++  N
Sbjct: 246 HSLEDRIVKLFMRKLVKGEADNLPRNLPVQHKV---FEPKV--KLIGKAQFASEAELKAN 300

Query: 304 RRSRSAKLR 312
            RSRSA +R
Sbjct: 301 PRSRSAVMR 309


>gi|225872742|ref|YP_002754199.1| S-adenosyl-methyltransferase MraW [Acidobacterium capsulatum ATCC
           51196]
 gi|263433378|sp|C1F466|RSMH_ACIC5 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|225792322|gb|ACO32412.1| S-adenosyl-methyltransferase MraW [Acidobacterium capsulatum ATCC
           51196]
          Length = 297

 Score =  189 bits (480), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 121/305 (39%), Positives = 173/305 (56%), Gaps = 28/305 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HVPVLL+  I  LN   G    DAT G  G+S +  ++   G  +IA DRDP A+   + 
Sbjct: 6   HVPVLLQDAIRYLNVRRGGTYADATLGLAGHSSAIARLLGPGGTLIAFDRDPEAMELAKS 65

Query: 77  TMRDYKEQFS-------LFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
            +   + +         L    FS+ +D +    +DG++ D GVSS+Q D   RGFSFQ 
Sbjct: 66  RLDALRAELGSEMPKVILHSTEFSEAEDLIEPGSLDGLLADFGVSSLQFDEAHRGFSFQA 125

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM+   G++A+ VVNQ   K+L  ++   GEE+++ RIA AIV+ R   P  TT
Sbjct: 126 DGPLDMRMNPRVGLTAAQVVNQFGEKELADLIYEFGEERRSRRIARAIVRAR---PVSTT 182

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ ++       K+ RIHPATR+FQALRI+VN E+ ++   L+ A K L+ GG L+V+
Sbjct: 183 AQLARVVSAAAPAMKSERIHPATRTFQALRIYVNQELGQIEALLKVAPKLLRKGGRLVVI 242

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDR+ K   A R G                +++ +T+K +   +E+   N R+RS
Sbjct: 243 SFHSLEDRIAKD--ALREG------------GQQGIYEVLTRKPLTAGEEETDRNPRARS 288

Query: 309 AKLRA 313
           AKLRA
Sbjct: 289 AKLRA 293


>gi|51892339|ref|YP_075030.1| S-adenosyl-methyltransferase MraW [Symbiobacterium thermophilum IAM
           14863]
 gi|116241373|sp|Q67Q57|RSMH_SYMTH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|51856028|dbj|BAD40186.1| putative S-adenosylmethionine-dependent methyltransferase
           [Symbiobacterium thermophilum IAM 14863]
          Length = 318

 Score =  189 bits (480), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 113/304 (37%), Positives = 173/304 (56%), Gaps = 11/304 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H+PVLL++ +  L   PG   +D T G GG++    +  S    +I LD+D  A+    +
Sbjct: 5   HIPVLLQETMEALAVRPGGTYIDCTVGGGGHAAEILRRSSPDGRLIGLDQDENALRAAGD 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  + ++ +L +  F  + D     G+   DGV+ D+GVSS Q D G+RGFS+    PL
Sbjct: 65  RLAPFGDRVTLVRTNFEHVADVADRLGLGAADGVLMDIGVSSHQFDEGERGFSYHHDAPL 124

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     ++A+ +VN+   +++ R++   GEE+ ASRIA  IV+ R+  P +TT  L 
Sbjct: 125 DMRMDRTRPLTAAVLVNEWEEEEIARVIREYGEERWASRIAQFIVRARRQRPIETTGQLV 184

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  +  S +    HPA R+FQA+RI VN+E+  L +GL  A + L+ GG L V++FH
Sbjct: 185 EIIKAAIPASARREGGHPARRTFQAIRIAVNDELGALERGLEGALRVLRPGGRLAVITFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK+ FA R  K       +P        + + +T+K V  +  +V  N RSRSA
Sbjct: 245 SLEDRIVKQTFA-RWAKPCTCPPDLPVCVCGKAPLAEPVTRKPVRASGAEVKANPRSRSA 303

Query: 310 KLRA 313
            LRA
Sbjct: 304 TLRA 307


>gi|302391523|ref|YP_003827343.1| S-adenosyl-methyltransferase MraW [Acetohalobium arabaticum DSM
           5501]
 gi|302203600|gb|ADL12278.1| S-adenosyl-methyltransferase MraW [Acetohalobium arabaticum DSM
           5501]
          Length = 311

 Score =  189 bits (480), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 118/312 (37%), Positives = 179/312 (57%), Gaps = 19/312 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQ 75
           +H+PVLL + I LL+     + +D T G GG++     K+ ++  +I +D+D  A+   +
Sbjct: 4   EHIPVLLTETIELLDCKEDGIYVDCTVGGGGHAVEIADKLTTDGTLIGIDQDLAAIEAAK 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E++ + + +  L +  +  +   +   G   VDG++FDLG SS QID   RGFS+Q   P
Sbjct: 64  ESLSNAECKVELVRDNYKNIDRVLNRFGIDSVDGLLFDLGFSSHQIDTAQRGFSYQYEAP 123

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM   +  +A+D+VN  +  +LT I+   GEEK ASRIA  IV+ RQ  PF+ T +L
Sbjct: 124 LDMRMDQRASRTAADLVNDLSQSELTDIIAEYGEEKWASRIAEFIVRYRQDKPFKLTTEL 183

Query: 192 SSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
              I+  +   ++ +  HPA R+FQALRI VNNE+E L + L      LK+GG +  ++F
Sbjct: 184 VETIKAAIPAGARRSGPHPAKRTFQALRIAVNNELEVLTKTLDKIVPLLKSGGRMAFITF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSN------AHPAVFQSITKKVVVPTQEDVAFNR 304
           HSLEDR+VK  F     K +A   + P +         A  + ITKK +   Q+++  N 
Sbjct: 244 HSLEDRIVKHKF-----KELAQDCICPPDFPVCACDEEAEVEIITKKPITAQQKEIDDNP 298

Query: 305 RSRSAKLRAGMR 316
           R+RSAKLRA  +
Sbjct: 299 RARSAKLRAAEK 310


>gi|16273056|ref|NP_439288.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae Rd KW20]
 gi|145630229|ref|ZP_01786011.1| S-adenosyl-methyltransferase [Haemophilus influenzae R3021]
 gi|260580214|ref|ZP_05848044.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae RdAW]
 gi|260581821|ref|ZP_05849617.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae NT127]
 gi|1175483|sp|P45057|RSMH_HAEIN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|1574685|gb|AAC22785.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
 gi|144984510|gb|EDJ91933.1| S-adenosyl-methyltransferase [Haemophilus influenzae R3021]
 gi|260093498|gb|EEW77431.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae RdAW]
 gi|260095014|gb|EEW78906.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae NT127]
          Length = 321

 Score =  189 bits (480), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 128/318 (40%), Positives = 182/318 (57%), Gaps = 30/318 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQE 76
           H+ VLL + +  L      + +D TFG GG+SR    ++ SN  +IA+DRDP A++   +
Sbjct: 12  HITVLLHEAVNGLALKENGIYIDGTFGRGGHSRFILSQLSSNGRLIAVDRDPRAIAEAHK 71

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            ++D +  F +   +FS + + + DK      +DG++ DLGVSS Q+D  +RGFSF K G
Sbjct: 72  -IQDLR--FQIEHNSFSHIPE-ICDKLNLVGKIDGILLDLGVSSPQLDEAERGFSFMKDG 127

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP------ 184
           PLDMRM  + G+SA + + Q +++DLT +L   GEE+ A RIA AIV   +SA       
Sbjct: 128 PLDMRMDTTQGLSAEEWLKQVSIEDLTWVLKTFGEERFAKRIATAIVDFNKSAVKNGTEF 187

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
              T  L+ LI + V F K+   HPATRSFQA+RIF+N+E++EL   L SA   L   G 
Sbjct: 188 LSRTSQLAELISQAVPF-KDKHKHPATRSFQAIRIFINSELDELESLLNSALDMLAPEGR 246

Query: 245 LIVVSFHSLEDRLVKKFFASRSG-----KVMAVRH-MIPSNAHPAVFQSITKKVVVPTQE 298
           L ++SFHSLEDR+VK F   +S      K + +R   I  N        I  K + P+  
Sbjct: 247 LSIISFHSLEDRMVKHFMKKQSKGEDIPKGLPLREDQIQRNQK----LRIIGKAIQPSDA 302

Query: 299 DVAFNRRSRSAKLRAGMR 316
           ++  N RSRSA LR   R
Sbjct: 303 EIQANPRSRSAILRVAER 320


>gi|84394442|ref|ZP_00993158.1| S-adenosyl-methyltransferase [Vibrio splendidus 12B01]
 gi|84374941|gb|EAP91872.1| S-adenosyl-methyltransferase [Vibrio splendidus 12B01]
          Length = 316

 Score =  189 bits (480), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 118/309 (38%), Positives = 176/309 (56%), Gaps = 20/309 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H+ VLL + I  L   P    +D TFG GG+SR+   K+G N  + ++DRDP A++  Q+
Sbjct: 7   HISVLLNESIDGLAIKPDGTYIDGTFGRGGHSRTILSKLGENGRLFSIDRDPQAIAEAQK 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  +F++    FS + +Y         VDGV+ DLGVSS Q+D  +RGFSF K GP
Sbjct: 67  I---DDPRFTIIHGPFSGMAEYAERYDLVGQVDGVLLDLGVSSPQLDDAERGFSFMKDGP 123

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV---KRRQSAPFQTT 188
           LDMRM   +G+  S  + +A++ D+T ++   GE+K A RIA  I+   +  ++ P   T
Sbjct: 124 LDMRMDPTTGVPVSQWLVEADLDDITWVIREFGEDKHARRIAKGIIAYQENEENEPLTRT 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ LI      S   + HPATR+FQA RI++N+E+EE+   L+ A   L   G + V+
Sbjct: 184 GQLAKLISDVAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAASILAPQGRISVI 243

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITK---KVVVPTQEDVAFN 303
           SFHSLEDR+VK+F    S +   V H +P   +   A+  +  K   K + P++++V  N
Sbjct: 244 SFHSLEDRMVKRFIRKES-QGPQVPHGLPLTEDQIKALGSADLKPIGKAIKPSKDEVDEN 302

Query: 304 RRSRSAKLR 312
            RSRS+ LR
Sbjct: 303 TRSRSSVLR 311


>gi|332160404|ref|YP_004296981.1| S-adenosyl-methyltransferase MraW [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325664634|gb|ADZ41278.1| S-adenosyl-methyltransferase MraW [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 303

 Score =  189 bits (479), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 120/309 (38%), Positives = 180/309 (58%), Gaps = 19/309 (6%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQETMRD 80
           +L++ +  LN     + +D TFG GG+SR    ++G    +IA+DRDP A+   +     
Sbjct: 1   MLDEAVNGLNIRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDRDPQAIEAAKSIT-- 58

Query: 81  YKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
              +FS+    FS L  YV +      ++GV+ DLGVSS Q+D  +RGFSF + GPLDMR
Sbjct: 59  -DPRFSIVHGPFSDLAHYVRELDLVGRINGVLLDLGVSSPQLDDPERGFSFMRDGPLDMR 117

Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M  + GISA++ + +A+  D+  +L   GEE+ A R+A AIV+R  + P   T++L+ LI
Sbjct: 118 MDPTRGISAAEWLMKASADDIAWVLKTFGEERFAKRLAKAIVERNLTQPMTRTKELADLI 177

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
                F + ++ HPATRSFQA+RI++N+E+EE+ + L  A + L   G L V+SFHSLED
Sbjct: 178 ANASPFREKHK-HPATRSFQAIRIYINSELEEIERTLDGALEVLAPEGRLSVISFHSLED 236

Query: 256 RLVKKFFA--SRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRSRSAK 310
           R+VK F    SR  +V A   +  +          +S+ K  ++P   +VA N R+RS+ 
Sbjct: 237 RIVKNFIRHHSRGPQVPAGLPLTEAQLRSMGGRTLKSVGK--MMPPDAEVAENPRARSSV 294

Query: 311 LRAGMRTVE 319
           LR   R  E
Sbjct: 295 LRFAERIKE 303


>gi|296393499|ref|YP_003658383.1| S-adenosyl-methyltransferase MraW [Segniliparus rotundus DSM 44985]
 gi|296180646|gb|ADG97552.1| S-adenosyl-methyltransferase MraW [Segniliparus rotundus DSM 44985]
          Length = 319

 Score =  189 bits (479), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 111/300 (37%), Positives = 175/300 (58%), Gaps = 7/300 (2%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74
           HVPVLL +V+ LL PA   P  V++DAT G GG++++  +      V+ +DRD  A+   
Sbjct: 8   HVPVLLHRVVQLLAPALSAPNPVLVDATLGLGGHTKALLERFPALRVVGVDRDEKAIEVA 67

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +  +    ++     A F +++  + D+  +G + DLGVSSMQ+D   RGF++ K  PLD
Sbjct: 68  RARLGALADRVRFVHARFDEVEHALGDEAANGYLLDLGVSSMQLDQAQRGFAYSKEAPLD 127

Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM  S  ++A++V+     ++L R+L   GEE+ ASRIA AIV+RR +AP  ++ +L  
Sbjct: 128 MRMDSSAELTAAEVLATYEERELARVLRTYGEERFASRIAAAIVRRRSTAPLSSSAELVR 187

Query: 194 LIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           LI   +   +K    HPA R+FQALR+ VN+E+  L   L  A  AL   G ++V+++ S
Sbjct: 188 LIDDAIPAKAKRTGGHPAKRTFQALRVEVNDELGSLRAALPKALAALAPSGRIVVLAYQS 247

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK+ FA  +     +   +      A F S+T+   + + E++A N R+ S +LR
Sbjct: 248 LEDRIVKEAFARATTSRTPIGLPVELPGFAAEFVSLTRGAELASDEEIAQNSRAASVRLR 307


>gi|18310847|ref|NP_562781.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens str. 13]
 gi|20138978|sp|Q8XJ96|RSMH_CLOPE RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|18145529|dbj|BAB81571.1| conserved hypothetical protein [Clostridium perfringens str. 13]
          Length = 310

 Score =  189 bits (479), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 119/308 (38%), Positives = 176/308 (57%), Gaps = 22/308 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           HV VLL++ I  LN     + +D T G  G+S    K  S+   +I  D+D  A+    E
Sbjct: 5   HVSVLLDECINALNIKEDGIYVDCTLGGAGHSSEIVKRLSSDGRLIRFDQDKDALKAAGE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++DYK   +   + F  + D + D    GVDG++ DLGVSS Q+D G+RGFS+ +  PL
Sbjct: 65  RLKDYK-NVTYVHSNFYAIYDVLTDLGIDGVDGILMDLGVSSYQLDNGERGFSYMQDAPL 123

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+     SA ++VN  + ++L RI+   GEEK A RIA  IVK R+    +TT +L 
Sbjct: 124 DMRMNRENEFSAYEIVNTYSEEELYRIIKEYGEEKFAKRIASFIVKNREEKNIETTLELV 183

Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  +   ++    HPA R+FQA+RI VN E+E +++ +    K L  GG + +++FH
Sbjct: 184 EIIKAAIPAKARREGPHPAKRTFQAIRIEVNKELEIISKTILDGVKKLNKGGRMAIITFH 243

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPS-------NAHPAVFQSITKKVVVPTQEDVAFNR 304
           SLEDR+VK  F     K +A     PS       N  P V + I++K +  ++E++ FN 
Sbjct: 244 SLEDRIVKNTF-----KELANPCTCPSEFPVCVCNRKPEV-KLISRKPIEASKEELEFNP 297

Query: 305 RSRSAKLR 312
           RSRSAKLR
Sbjct: 298 RSRSAKLR 305


>gi|90580220|ref|ZP_01236027.1| S-adenosyl-methyltransferase [Vibrio angustum S14]
 gi|90438522|gb|EAS63706.1| S-adenosyl-methyltransferase [Vibrio angustum S14]
          Length = 315

 Score =  189 bits (479), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 122/315 (38%), Positives = 183/315 (58%), Gaps = 23/315 (7%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQ 75
           +HV VLL + +  L   P  + +D TFG GG+SR     +G N  + ++DRDP A++  Q
Sbjct: 6   EHVSVLLNESVDGLAIKPDGIYIDGTFGRGGHSRLILSHLGENGRLYSIDRDPQAIAEAQ 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +       +F +    FS ++ Y+ ++     VDGV+ DLGVSS Q+D  +RGFSF + G
Sbjct: 66  KI---DDPRFEIIHGPFSGMEKYMEERDLIGRVDGVLLDLGVSSPQLDDAERGFSFMRDG 122

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---PFQT 187
           PLDMRM   SG SA++ + +A   D+  +L   GEE+ A RIA  IV+ R++    P   
Sbjct: 123 PLDMRMDPTSGQSAAEWLAEAEADDIAWVLKEFGEERFAKRIARGIVEHRENPEKEPLTR 182

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T++L+SLI     F K+   HPATRSFQA+RI++N+E++E+   L  A   L   G L V
Sbjct: 183 TRELASLIAAVSPF-KDKHKHPATRSFQAIRIYINSELDEIETALNGAVNILAPEGRLSV 241

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH------PAVFQSITKKVVVPTQEDVA 301
           +SFHSLEDR+VK+F   +S K   V   +P           A  +++  K + P+Q+++ 
Sbjct: 242 ISFHSLEDRMVKRFIRKQS-KGPEVPAGLPLTEEQIKALGSAALKTLG-KAIKPSQDELG 299

Query: 302 FNRRSRSAKLRAGMR 316
           +N R+RS+ LR   R
Sbjct: 300 YNTRARSSVLRLAER 314


>gi|332528826|ref|ZP_08404800.1| 16S rRNA m(4)C1402 methyltranserfase [Hylemonella gracilis ATCC
           19624]
 gi|332041685|gb|EGI78037.1| 16S rRNA m(4)C1402 methyltranserfase [Hylemonella gracilis ATCC
           19624]
          Length = 320

 Score =  189 bits (479), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 126/313 (40%), Positives = 185/313 (59%), Gaps = 21/313 (6%)

Query: 20  HVPVLL-EKVIALLN-----PAPGKV----ILDATFGAGGYSR---SFCKMGSNVIALDR 66
           H  VLL E V ALLN     P   K      +DATFG GG+SR   S     + + A D+
Sbjct: 7   HTTVLLNEAVDALLNRPVELPDSLKTEDGHYVDATFGRGGHSRLLLSRLAPQARLTAFDK 66

Query: 67  DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126
           DP AV+  Q+ ++    +FS+    F+ L + +P +   GV+ DLG+SS QID   RGFS
Sbjct: 67  DPQAVAEAQKIVQS-DARFSIRHQGFAHLNE-LPTQSCQGVLMDLGISSPQIDDPARGFS 124

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA-P 184
           F+  GPLDMRM  + G S ++ +  A V+++  ++   GEE+ A  IA AIV+RRQ+  P
Sbjct: 125 FRAEGPLDMRMDPTRGRSVAEWLMSAEVREIAEVIRDYGEERFAGPIAKAIVERRQAGRP 184

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
             TT +L+ L+   V   +  + +PATR+FQA RIF+N E+EEL   L ++   L+ GG 
Sbjct: 185 LATTAELAQLVAGAVKTREPGQ-NPATRTFQAFRIFINAELEELQAALEASLDVLQTGGR 243

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           L+V+SFHSLEDR+VK+F A  + +V   R    +   P   +++ +  V P++ +VA N 
Sbjct: 244 LVVISFHSLEDRIVKQFIARHAREVYDRRAPFAAPT-PTRLRAVER--VRPSEAEVAANP 300

Query: 305 RSRSAKLRAGMRT 317
           R+RSA +R  +RT
Sbjct: 301 RARSAIMRVAVRT 313


>gi|303327356|ref|ZP_07357797.1| S-adenosyl-methyltransferase MraW [Desulfovibrio sp. 3_1_syn3]
 gi|302862296|gb|EFL85229.1| S-adenosyl-methyltransferase MraW [Desulfovibrio sp. 3_1_syn3]
          Length = 328

 Score =  189 bits (479), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 119/314 (37%), Positives = 172/314 (54%), Gaps = 12/314 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77
           HVPVL  + +  L P  G   LD T G GG++ +      GS +  LDRD  A+   +  
Sbjct: 16  HVPVLPAETLEALAPRAGGRYLDGTLGMGGHAAAVLSAAPGSELCGLDRDEQALDLARAR 75

Query: 78  MRDYKEQFSLFQATFSQ----LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           +  +  +   F   +S+    L++   DK VDG + D+GVSS+Q+D  +RGFSF   GPL
Sbjct: 76  LAPFGGRAHFFHCRYSRFAEALKELQWDK-VDGALLDIGVSSLQLDENERGFSFYGDGPL 134

Query: 134 DMRMS--CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           DMRM      +SA   VN+ +   L   +  LGEE QA RIA  IV+ RQ AP  +T +L
Sbjct: 135 DMRMDQHSGELSAWHWVNRESFARLKECIATLGEEPQAGRIARVIVEARQKAPIDSTAEL 194

Query: 192 SSLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           ++L++K     +    R HPATR+FQALR+ VN+E+ EL + L      L  GG L V++
Sbjct: 195 AALVEKAYPPAWRAKARRHPATRTFQALRMAVNDELGELRRFLDQILAWLPVGGRLAVIT 254

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK+     +      RH+ +    H    + + KK +    E++A N R+ S
Sbjct: 255 FHSLEDRMVKQAMRHWAEGCRCPRHVPVCVCRHQPEVRILHKKPLQAGSEELAVNPRAGS 314

Query: 309 AKLRAGMRTVERSI 322
           AKLRA  +  E ++
Sbjct: 315 AKLRAVEKIAEAAV 328


>gi|317057677|ref|YP_004106144.1| S-adenosyl-methyltransferase MraW [Ruminococcus albus 7]
 gi|315449946|gb|ADU23510.1| S-adenosyl-methyltransferase MraW [Ruminococcus albus 7]
          Length = 311

 Score =  189 bits (479), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 113/299 (37%), Positives = 167/299 (55%), Gaps = 8/299 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77
           H+PVLL + I  L+  P  +  D T G  G+SR   K      +I++DRDP AV+   E 
Sbjct: 5   HIPVLLNECIEGLDIKPDGIYCDGTAGGAGHSREIAKRLTTGRLISVDRDPEAVAVATER 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +       ++ +  +S+L +       +G DG++ DLGVSS Q+D  +RGFS+    PLD
Sbjct: 65  LSGLPA--TVVRGNYSELDEIFARLGIEGADGILMDLGVSSYQLDNAERGFSYHTDAPLD 122

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRMS  G+SA DVVN  + + L RI+   G+EK +  IA  IV+ R+  P +TT +L+ +
Sbjct: 123 MRMSSEGLSARDVVNSYDERTLARIIFEYGDEKFSRNIAKKIVQVREDKPIETTLELAEV 182

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           I+  V        +P  ++FQA+RI VN E+E L+  L  A   L AGG L +++FHSLE
Sbjct: 183 IKSAVPQKVRREKNPCKKTFQAIRIEVNAELEHLSIALDKAFDLLNAGGRLCIITFHSLE 242

Query: 255 DRLVKKFFAS-RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           DRLVK+ F S   G +      +         + IT+K + P+  +   N+R+ SAKLR
Sbjct: 243 DRLVKQRFKSFCQGCICPPDFPVCVCGRTPRGKLITRKPIEPSDSENEENKRAHSAKLR 301


>gi|257451725|ref|ZP_05617024.1| methyltransferase [Fusobacterium sp. 3_1_5R]
          Length = 313

 Score =  189 bits (479), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 114/311 (36%), Positives = 180/311 (57%), Gaps = 22/311 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+PVL E+ +  L   P  + +D T G G +S    K  S    +I++D+D  A++  ++
Sbjct: 9   HIPVLYEETLDQLVWNPDGIYIDCTLGGGSHSEGILKRLSEKGRLISIDQDANAIAFCKK 68

Query: 77  TMRDYKEQFSLFQATFSQLQ--DYVP--DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            +  Y +Q+S+FQ  F  +    Y+   DK VDG++ D+GVSS Q+D G+RGFS++    
Sbjct: 69  RLEKYGKQWSVFQNNFENIDIVSYLAGVDK-VDGILMDIGVSSTQLDDGERGFSYRYDAK 127

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+    +SA +VVN    +DL RIL   GEE+ A +IA  I + R+  P +TT +L
Sbjct: 128 LDMRMNKEQDLSAYEVVNTYAEQDLVRILFEYGEERHAKKIASFICENRKEKPIETTGEL 187

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            ++I++   +S+    HPA ++FQA+RI VN E+E L + ++ +   LK  G L +++FH
Sbjct: 188 VAIIKRA--YSERASKHPAKKTFQAIRIEVNRELEVLEKAIKKSVDLLKPKGHLAIITFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSN------AHPAVFQSITKKVVVPTQEDVAFNRR 305
           SLEDRLVK  F     K +A     P           A  + +TKK ++P+++++  N R
Sbjct: 246 SLEDRLVKTVF-----KDLATACKCPPELPVCVCGGKAKVKILTKKPIIPSEDELGKNNR 300

Query: 306 SRSAKLRAGMR 316
           + S+KLR   R
Sbjct: 301 AHSSKLRVVER 311


>gi|315586621|gb|ADU41002.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori 35A]
          Length = 308

 Score =  189 bits (479), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 119/304 (39%), Positives = 178/304 (58%), Gaps = 20/304 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVSCGQET 77
           H  +LL++V+    P    V++D T G GG+S++    K    +I +D+D FA    +E 
Sbjct: 8   HQSILLQEVLQAFAPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFAQEIAKER 67

Query: 78  MRDYKEQFSLFQATFSQ-----LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           ++ ++ +++L    F++     L+ +  DK + GV+ DLGVSS+Q+D  +RGF+F  S  
Sbjct: 68  LKAFEGRYNLLSGGFAKRFKEALETH--DKEIKGVLVDLGVSSLQLDDDNRGFNFH-SHA 124

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM   G ++A  V+N   +  L +I    GE K+  +IAH I +RR   PF+  +DL
Sbjct: 125 LDMRMDLEGDLNAQKVINSYPMVALEKIFKDYGEIKEYKKIAHKIAERRTKKPFKDAKDL 184

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           S  +      SKN +IHPAT  FQA+RI VN E+EEL + L+ A + LK G +L V+SFH
Sbjct: 185 SDFLSS---LSKNKKIHPATLVFQAVRIEVNRELEELKEFLQCA-RNLK-GAILCVISFH 239

Query: 252 SLEDRLVKKFFASRSGKVMA---VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SLED LVK  F   +   +          SN H A+ + +TKK + P+ E++  NRRSRS
Sbjct: 240 SLEDSLVKNAFKDYAKNCICDPLSFKCACSNNH-ALGEILTKKPITPSPEEIKNNRRSRS 298

Query: 309 AKLR 312
           AK+R
Sbjct: 299 AKMR 302


>gi|154485082|ref|ZP_02027530.1| hypothetical protein EUBVEN_02805 [Eubacterium ventriosum ATCC
           27560]
 gi|149734035|gb|EDM50154.1| hypothetical protein EUBVEN_02805 [Eubacterium ventriosum ATCC
           27560]
          Length = 311

 Score =  189 bits (479), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 110/304 (36%), Positives = 180/304 (59%), Gaps = 13/304 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           HV VLL + I  LN  P  + +D T G GG+S   CK  S+   +I +D+D  A+   +E
Sbjct: 5   HVSVLLNETIDGLNINPDGIYVDGTLGGGGHSYEICKRLSDKGRLIGIDQDGEALEAARE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +++++++ +L ++ + ++   + D   + VDG+V DLGVSS Q+D  +RGFS++   PL
Sbjct: 65  RLKEFEDKITLVRSNYCEIDTILKDLEIEKVDGIVLDLGVSSYQLDNLERGFSYKSDAPL 124

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM      +A+DVVN  +  +L RI+   GE+K A  IA  IV  R+  P +TT +LS
Sbjct: 125 DMRMDQRQNKTAADVVNNYSENELFRIIRDYGEDKFAKNIAKHIVMARKEKPLETTAELS 184

Query: 193 SLIQKTV---YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            +I+ ++   + +K    HPA ++FQA+RI VN E+  L + L +    L  GG + V++
Sbjct: 185 EIIKASIPMKFQAKGG--HPAKKTFQAIRIEVNQELTVLKESLDTMIDHLNPGGRICVIT 242

Query: 250 FHSLEDRLVK-KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+ K KF  + +         +      +  + IT+K ++P++E++  N+RS+S
Sbjct: 243 FHSLEDRITKIKFRENENPCTCPPDFPVCVCGKVSKGKVITRKPIIPSEEEMTENKRSKS 302

Query: 309 AKLR 312
           +KLR
Sbjct: 303 SKLR 306


>gi|229815097|ref|ZP_04445434.1| hypothetical protein COLINT_02139 [Collinsella intestinalis DSM
           13280]
 gi|229809327|gb|EEP45092.1| hypothetical protein COLINT_02139 [Collinsella intestinalis DSM
           13280]
          Length = 325

 Score =  189 bits (479), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 121/312 (38%), Positives = 179/312 (57%), Gaps = 18/312 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYS-RSFCKMGSN--VIALDRDPFAVSCGQE 76
           H PV+L++V+  L   PG V+ D T G  G+S R   ++GS   ++ +D+D  A++   +
Sbjct: 16  HEPVMLQEVLEQLQLKPGSVVCDCTLGGAGHSVRMAERVGSEGLLLGVDQDDMALAAAGK 75

Query: 77  TM--RDYKEQFSLFQATFSQLQDY-----VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
            +          L +  F  L +      VP  GVDG +FDLGVSS Q+D   RGFS+ +
Sbjct: 76  RLDAEAPDTPHKLLKGNFGDLDELLCSAQVP--GVDGFLFDLGVSSPQLDIPGRGFSYNE 133

Query: 130 SGPLDMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
             PLDMRM    + ++A++V+N     DL RIL I GEEK A +IA  +V+RRQ +P  +
Sbjct: 134 DAPLDMRMDPGTNTLNAAEVLNTYTEADLARILRIYGEEKFARQIAREVVRRRQESPLVS 193

Query: 188 TQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T D    I+  +   ++ +  HPA RSFQA+RI VN+E++ L +GL +A + L  GG + 
Sbjct: 194 TGDFVDAIKAGIPAAARRHGGHPAKRSFQAIRIEVNHELDVLERGLEAAIRWLNPGGRVC 253

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNR 304
           V+S+HSLEDR+VK+ F   S K       IP     +  + +  T+K +V T E+V  N 
Sbjct: 254 VISYHSLEDRIVKRLFQELS-KGCTCPPDIPVCVCGNVPIVKVTTRKPLVATAEEVERNP 312

Query: 305 RSRSAKLRAGMR 316
           R+RSAK+R   R
Sbjct: 313 RARSAKIRCAER 324


>gi|15676324|ref|NP_273460.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis MC58]
 gi|20139199|sp|Q9K0Z0|RSMH_NEIMB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|7225634|gb|AAF40850.1| conserved hypothetical protein [Neisseria meningitidis MC58]
 gi|325140926|gb|EGC63433.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis CU385]
          Length = 328

 Score =  189 bits (479), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 118/306 (38%), Positives = 173/306 (56%), Gaps = 10/306 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMG--SNVIALDRDPFAVSCGQE 76
           H+ VLL + +  L      V +D TFG GG+SR    ++G    +I  D+DP A++  +E
Sbjct: 9   HITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFDKDPQAIAVAEE 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             R  K +  +    F+  Q  +   G   VDG +FDLG+SS QID G RGFSF+   PL
Sbjct: 69  LARSDK-RVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGSRGFSFRFDAPL 127

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  + G+SA++ +  A+ +DL  ++   GEE+ + RIA AIV +R  +P  TT+ L+
Sbjct: 128 DMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRRIARAIVAQRAESPIDTTRKLA 187

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            ++ + V   +  +  PATR+FQA+RIF+N E+EE+   L      LK GG L V++FHS
Sbjct: 188 QIVAQNVRTRERGQ-DPATRTFQAVRIFINRELEEVGAVLPQVMCRLKEGGRLAVIAFHS 246

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK+F    S      R      A  P +   I  + + P + ++A N R+RSA L
Sbjct: 247 LEDRIVKQFVKKYSQHAPLPRWAAVREADLPELPLKIVGRALKPGEAEIAANPRARSAVL 306

Query: 312 RAGMRT 317
           R   RT
Sbjct: 307 RVAERT 312


>gi|317058284|ref|ZP_07922769.1| S-adenosyl-methyltransferase mraW [Fusobacterium sp. 3_1_5R]
 gi|313683960|gb|EFS20795.1| S-adenosyl-methyltransferase mraW [Fusobacterium sp. 3_1_5R]
          Length = 318

 Score =  189 bits (479), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 114/311 (36%), Positives = 180/311 (57%), Gaps = 22/311 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+PVL E+ +  L   P  + +D T G G +S    K  S    +I++D+D  A++  ++
Sbjct: 14  HIPVLYEETLDQLVWNPDGIYIDCTLGGGSHSEGILKRLSEKGRLISIDQDANAIAFCKK 73

Query: 77  TMRDYKEQFSLFQATFSQLQ--DYVP--DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            +  Y +Q+S+FQ  F  +    Y+   DK VDG++ D+GVSS Q+D G+RGFS++    
Sbjct: 74  RLEKYGKQWSVFQNNFENIDIVSYLAGVDK-VDGILMDIGVSSTQLDDGERGFSYRYDAK 132

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+    +SA +VVN    +DL RIL   GEE+ A +IA  I + R+  P +TT +L
Sbjct: 133 LDMRMNKEQDLSAYEVVNTYAEQDLVRILFEYGEERHAKKIASFICENRKEKPIETTGEL 192

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            ++I++   +S+    HPA ++FQA+RI VN E+E L + ++ +   LK  G L +++FH
Sbjct: 193 VAIIKRA--YSERASKHPAKKTFQAIRIEVNRELEVLEKAIKKSVDLLKPKGHLAIITFH 250

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSN------AHPAVFQSITKKVVVPTQEDVAFNRR 305
           SLEDRLVK  F     K +A     P           A  + +TKK ++P+++++  N R
Sbjct: 251 SLEDRLVKTVF-----KDLATACKCPPELPVCVCGGKAKVKILTKKPIIPSEDELGKNNR 305

Query: 306 SRSAKLRAGMR 316
           + S+KLR   R
Sbjct: 306 AHSSKLRVVER 316


>gi|170720122|ref|YP_001747810.1| S-adenosyl-methyltransferase MraW [Pseudomonas putida W619]
 gi|262825121|sp|B1J1Y2|RSMH_PSEPW RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|169758125|gb|ACA71441.1| S-adenosyl-methyltransferase MraW [Pseudomonas putida W619]
          Length = 315

 Score =  189 bits (479), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 119/309 (38%), Positives = 179/309 (57%), Gaps = 22/309 (7%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMG--SNVIALDRDPFAVSCGQ 75
           +H+ VLL++ +  L        LD TFG GG+SR    K+G    ++  D+DP A++ GQ
Sbjct: 8   NHITVLLDEAVEALALRADGCYLDGTFGRGGHSRLILSKLGPQGRLLGFDKDPQAIATGQ 67

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
             +     +F + Q +F++L   V ++G    V G++ DLGVSS Q+D  +RGFSF   G
Sbjct: 68  -ALAAEDGRFVIVQRSFAELGAEVAERGLAGKVSGILLDLGVSSPQLDDPERGFSFLNDG 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+   GISA++ +  A V+++ R+    GEE+ A R+A A+V+RR+  PF  T D
Sbjct: 127 PLDMRMNPDQGISAAEFIATAPVEEIARVFKEYGEERFAGRMARAVVERREKQPFTRTAD 186

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ ++ K    +     +PATR+FQ LRI VNNE+ +L  GL +A  AL+ GG L V+SF
Sbjct: 187 LAEVL-KVANPAWEKGKNPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLAVISF 245

Query: 251 HSLEDRLVKKFF-------ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
           HSLEDR+VK F        A    + + V+H +     P +   +  K    ++ ++  N
Sbjct: 246 HSLEDRIVKLFMRKLVKGEADNLPRNLPVQHKV---FEPKI--RLIGKAQFASEAELKAN 300

Query: 304 RRSRSAKLR 312
            RSRSA +R
Sbjct: 301 PRSRSAVMR 309


>gi|295394731|ref|ZP_06804946.1| S-adenosyl-methyltransferase MraW [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294972327|gb|EFG48187.1| S-adenosyl-methyltransferase MraW [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 362

 Score =  189 bits (479), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 120/319 (37%), Positives = 177/319 (55%), Gaps = 26/319 (8%)

Query: 20  HVPVLLEKVIALLNP----------APGKVILDATFGAGGYSRSFCKMGSNV--IALDRD 67
           HVPVLL+  + LL            AP  V++D T G GG+S    ++  +V  I +DRD
Sbjct: 44  HVPVLLDMCVELLGHGIEEARARGIAP--VVIDFTLGMGGHSEGILRVFDDVHVIGIDRD 101

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRG 124
           P A+      +  +  +F     +   + + +  +G   + GV+FDLGVSS+Q+D   RG
Sbjct: 102 PAAIEIATSRLAPFGSRFEAVCTSDDNISEVLEQRGNPPISGVLFDLGVSSLQLDDDARG 161

Query: 125 FSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           FS+ +  PLDMRM+   GISA+DV+   +  DLTRI+   GEE+ A RIA AIV  R+  
Sbjct: 162 FSYSRDTPLDMRMNPTEGISAADVLATYSENDLTRIISTYGEERYARRIARAIVADREHT 221

Query: 184 PFQTTQDLSSLIQKTVYFSKNN--RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
           P+ +TQ L+ LI + V   KN   R HPA R+FQALRI VN+E+  + + L +A  AL  
Sbjct: 222 PWTSTQQLADLIGRIVPDPKNQRKRSHPAKRTFQALRIEVNDELGNITRSLPAALSALHL 281

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVR---HMIPSNAHPAVFQSITKKVVVPTQE 298
           GG+ +V S+ S ED +VK+ F  R G  +       ++P +  P   + I +      QE
Sbjct: 282 GGVAVVESYQSGEDIIVKRIF--RQGTTVQAPPDLPVVPDHLKPW-LEEIVRGAYKAPQE 338

Query: 299 DVAFNRRSRSAKLRAGMRT 317
           ++  N R+ S +LRA  +T
Sbjct: 339 EIDHNPRAASVRLRAVRKT 357


>gi|294501027|ref|YP_003564727.1| S-adenosyl-methyltransferase MraW [Bacillus megaterium QM B1551]
 gi|294350964|gb|ADE71293.1| S-adenosyl-methyltransferase MraW [Bacillus megaterium QM B1551]
          Length = 311

 Score =  189 bits (479), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 118/305 (38%), Positives = 176/305 (57%), Gaps = 13/305 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
           +H  VLL++    LN  P  V +D T G  G+S    K  S    +IA D+D  A++  +
Sbjct: 3   NHTTVLLKEAAEGLNIKPDGVYVDCTLGGAGHSEYIVKQLSEKGKLIAFDQDDVALANAK 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E +  Y ++  L ++ F  L++ +   G   VDGV+FDLGVSS Q+D  +RGFSF    P
Sbjct: 63  EKLAPYLDRVILIKSNFRYLKEQLMKHGIEEVDGVLFDLGVSSPQLDTPERGFSFHHDAP 122

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM   S  SA +VVN+   + L +I    GEEK + +IA  I   R+S P +TT +L
Sbjct: 123 LDMRMDQNSMFSAYNVVNEWPYEKLVKIFFQYGEEKFSKQIARKIEAYRESKPIETTLEL 182

Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             LI+  +   ++    HPA R FQA+RI VN+E++     +  A   +K GG + V++F
Sbjct: 183 VDLIKDGIPAPARRTGGHPAKRIFQAIRIAVNDELQVFEDAIEQAMDVIKKGGRVSVITF 242

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH---MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           HSLEDR+ K  F + S  V  + H   +IP    P + + IT+K ++P++E++  N+R+R
Sbjct: 243 HSLEDRICKVAFKNAS-TVPQLPHGLPIIPEEFKPKM-KVITRKPILPSEEEIEENKRAR 300

Query: 308 SAKLR 312
           SAKLR
Sbjct: 301 SAKLR 305


>gi|220931744|ref|YP_002508652.1| S-adenosyl-methyltransferase MraW [Halothermothrix orenii H 168]
 gi|263456084|sp|B8CWI8|RSMH_HALOH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|219993054|gb|ACL69657.1| S-adenosyl-methyltransferase MraW [Halothermothrix orenii H 168]
          Length = 311

 Score =  189 bits (479), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 119/317 (37%), Positives = 178/317 (56%), Gaps = 26/317 (8%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
           +H PVLL++ +  L      + +DAT G GG++    K  ++   VI +DRD  A+   +
Sbjct: 3   EHKPVLLKESLDYLKCKENGIYIDATLGRGGHTEEIIKAINDRGLVIGIDRDHEAIESVK 62

Query: 76  ETMRDY------KEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
           + ++ Y       + F+       Q       K VDG++FDLGVSS Q D  +RGFS++K
Sbjct: 63  KRLKKYSSLRTVHDNFTNIPFILEQFNI----KAVDGMLFDLGVSSPQFDNPERGFSYRK 118

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM  +  ++A  +VN  + ++LT I    GEE+ ASRIA+ I+K RQ  P +TT
Sbjct: 119 EGPLDMRMDKNQELTAEYIVNNFSHEELTNIFKEYGEERWASRIANFIIKSRQHKPIKTT 178

Query: 189 QDLSSLIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
             L+++I+  +  S   +  HPA R+FQALRI  N+E+  L + +    K LK GG + +
Sbjct: 179 LQLTTIIKDAIPASARRKGGHPARRTFQALRIATNDELNILKKTINHVVKFLKPGGRICI 238

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSN------AHPAVFQSITKKVVVPTQEDVA 301
           +SFHSLEDR+VKK F     + +A   + P +       H    + ITKK V P + +V 
Sbjct: 239 ISFHSLEDRIVKKTF-----RELARDCVCPPDFPECVCDHKRKLKIITKKPVKPGENEVE 293

Query: 302 FNRRSRSAKLRAGMRTV 318
            N R+RSA+LR   R +
Sbjct: 294 NNPRARSARLRVAERVL 310


>gi|118468497|ref|YP_888512.1| S-adenosyl-methyltransferase MraW [Mycobacterium smegmatis str. MC2
           155]
 gi|262825134|sp|A0R024|RSMH_MYCS2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|118169784|gb|ABK70680.1| S-adenosyl-methyltransferase MraW [Mycobacterium smegmatis str. MC2
           155]
          Length = 326

 Score =  189 bits (479), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 115/309 (37%), Positives = 179/309 (57%), Gaps = 15/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGK--------VILDATFGAGGYSRSFCK--MGSNVIALDRDPF 69
           H+PVLL++ + LL PA  +        V++DAT GAGG+S  F        +I LDRDP 
Sbjct: 9   HIPVLLDRCVELLAPALTRTDPDGTEAVLVDATLGAGGHSERFLTDFPALRLIGLDRDPN 68

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFS 126
           A++   + +  + ++ +L +  +  +   + + GV   DGV+FDLGVSSMQ+D   RGFS
Sbjct: 69  ALAIAGDRLAPFGDRVTLVRTRYDGITSALAEAGVRRIDGVLFDLGVSSMQLDQKQRGFS 128

Query: 127 FQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           +    PLDMRM    + +A+++VN  + K LTRIL   GEE+ A RIA  IV+RR   PF
Sbjct: 129 YSADAPLDMRMDPDALLTAAEIVNTYDAKTLTRILRDYGEERFAGRIADKIVRRRAKQPF 188

Query: 186 QTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
            TT +L  L+ + +   ++    HPA R+FQALRI VN E++ L   + +A  AL+ GG 
Sbjct: 189 TTTSELVELLYEAIPAPARRTGGHPAKRTFQALRIAVNAELDSLRAAIPAALAALRPGGR 248

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           ++V+++ SLEDR+VK+ F++ +         +    H   F ++T+      ++++  N 
Sbjct: 249 IVVMAYQSLEDRIVKQAFSTVTASRTPPGLPMELPGHEPEFVAVTRGAERADEQEIERNP 308

Query: 305 RSRSAKLRA 313
           RS   +LRA
Sbjct: 309 RSAPVRLRA 317


>gi|217963812|ref|YP_002349490.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes HCC23]
 gi|290892188|ref|ZP_06555184.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL
           J2-071]
 gi|263456353|sp|B8DH88|RSMH_LISMH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|217333082|gb|ACK38876.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes HCC23]
 gi|290558311|gb|EFD91829.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL
           J2-071]
 gi|307571615|emb|CAR84794.1| S-adenosyl-methyltransferase [Listeria monocytogenes L99]
          Length = 312

 Score =  189 bits (479), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 108/303 (35%), Positives = 175/303 (57%), Gaps = 11/303 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VLL + + +L   P  + +DAT G  G+S           ++ A D+D  A+   + 
Sbjct: 4   HETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDNAKI 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + DY ++ +  +A F  +++ + ++G   VDG+++DLGVSS Q+D  +RGFS+ +   L
Sbjct: 64  KLADYSDKVTFIKANFRDMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQDAAL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     ++A  VVN+ + +DL RI    GEEK + +IA  I +RR+  P +TT +L 
Sbjct: 124 DMRMDQEQELTAKTVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTGELV 183

Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  +   ++    HP  R+FQA+RI VN+E+  +   L  A   LK GG + V++FH
Sbjct: 184 DIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLLKPGGRISVITFH 243

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+ K+ F  A++   +     +IP    P  F+  T+K +VP++E++  N R+RSA
Sbjct: 244 SLEDRITKQLFQEATKGPDLPPGLPVIPDEYKPD-FKLATRKPIVPSEEELEQNNRARSA 302

Query: 310 KLR 312
           KLR
Sbjct: 303 KLR 305


>gi|300768848|ref|ZP_07078742.1| S-adenosyl-methyltransferase MraW [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|300493581|gb|EFK28755.1| S-adenosyl-methyltransferase MraW [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
          Length = 319

 Score =  188 bits (478), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 118/307 (38%), Positives = 170/307 (55%), Gaps = 13/307 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQ 75
           +H  VLL + IA LN  P  + +D T G GG+SR   +   +G ++ + D+D  A+   Q
Sbjct: 5   EHTTVLLHEAIAALNVRPDGIYVDCTLGGGGHSREILQQLGLGGHLYSFDQDQTAIDYNQ 64

Query: 76  ETMRDYKE--QFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
             +  Y E  Q +  ++ F+ L+  +  +G   VDGVV+DLGVSS Q D   RGFS+Q  
Sbjct: 65  SNLATYLERGQVTFIKSNFANLKTELNARGLDHVDGVVYDLGVSSPQFDDAARGFSYQHD 124

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM  S  ++A  VVN     DL RI    GEEK + ++A  I + R   P  TT 
Sbjct: 125 APLDMRMDQSQKLTAQTVVNTWPYADLVRIFYRYGEEKFSKQVARLIERERAVQPIVTTG 184

Query: 190 DLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L  +I+  +   ++    HPA R FQA+RI VNNE+  L   L  A   +   G + V+
Sbjct: 185 QLVEIIKNAIPARARRTGGHPAKRVFQAIRIAVNNELGVLETSLEQAIDLINVHGRVSVI 244

Query: 249 SFHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           +F SLEDRLVK  F   S   ++     +IP+   P  ++ +++K VVP+  ++  NRR+
Sbjct: 245 TFQSLEDRLVKTIFKEHSDLPELPPGLPVIPAEMQPD-YRLVSRKPVVPSDAEIEANRRA 303

Query: 307 RSAKLRA 313
           RSAKLRA
Sbjct: 304 RSAKLRA 310


>gi|317177525|dbj|BAJ55314.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori F16]
          Length = 308

 Score =  188 bits (478), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 120/304 (39%), Positives = 178/304 (58%), Gaps = 20/304 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVSCGQET 77
           H  VLL++V+    P    V++D T G GG+S++    K    +I +D+D FA    +E 
Sbjct: 8   HQSVLLQEVLQAFVPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFAQEIAKER 67

Query: 78  MRDYKEQFSLFQATFSQ-----LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           ++ ++ +++L    F++     L+ +  +K + GV+ DLGVSS+Q+D  +RGF+F  S  
Sbjct: 68  LKAFEGRYNLLSGGFAKRFKEALETH--NKEIKGVLVDLGVSSLQLDDDNRGFNFH-SHA 124

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM   G ++A  V+N   V  L +I    GE K+  +IAH I +RR   PF+  +DL
Sbjct: 125 LDMRMDLEGDLNAQKVINSYPVVALEKIFKDYGEIKEYKKIAHKITERRAKKPFKDAKDL 184

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           S  +      SKN +IHPAT  FQA+RI VN E+EEL + L+ A + LK G +L V+SFH
Sbjct: 185 SDFLSS---LSKNKKIHPATLVFQAVRIEVNRELEELKEFLQCA-RNLK-GAILCVISFH 239

Query: 252 SLEDRLVKKFFASRSGKVMA---VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SLED LVK  F   +   +          SN H A+ + +TKK + P+ E++  NRRSRS
Sbjct: 240 SLEDALVKNAFKDYAKNCICNPLSFKCTCSNNH-ALGEILTKKPITPSPEEIKNNRRSRS 298

Query: 309 AKLR 312
           AK+R
Sbjct: 299 AKMR 302


>gi|320093982|ref|ZP_08025809.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319979088|gb|EFW10604.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 355

 Score =  188 bits (478), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 118/323 (36%), Positives = 183/323 (56%), Gaps = 26/323 (8%)

Query: 6   CKTMSSAIHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSN 60
           C T ++A  HT     PVLL++ + +L PA   PG V++DAT G GG++    +   G  
Sbjct: 31  CNTRNAAELHT-----PVLLDECLDMLAPAIEGPGSVLIDATLGMGGHTEGALRRFPGLV 85

Query: 61  VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL----QDYVPDKGVDGVVFDLGVSSM 116
           VI +DRDP AV+   + +  +  +F   +AT+  +     D+ P    DGV+ DLGVSS+
Sbjct: 86  VIGIDRDPEAVALASKRLEGFGPRFLAVRATYDSIGQVVADHAPRGEADGVLMDLGVSSL 145

Query: 117 QIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175
           Q+D  +RGFS+ +  PLDMRM  + G+SA++++  A  +++TRIL   GEE+ A RIA  
Sbjct: 146 QLDDAERGFSYSQDAPLDMRMDPTRGVSAAELLATAPQEEITRILRAYGEERFAPRIARL 205

Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234
           +V RR + P   T  L  ++++ +   ++    +PA R+FQALR+ VN+E+  L + L +
Sbjct: 206 VVARRGAQPLTRTGQLVDIVREAIPAPARRTGGNPAKRTFQALRVAVNDELAILERALPA 265

Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVR---HMIPSNAHP--AVFQSIT 289
           A  +L+ GG L+V S+ SLEDR+VK     R G  ++      ++P  A P  A+     
Sbjct: 266 ALASLRVGGRLVVESYQSLEDRIVKNVL--RGGSTVSAPPGLPVVPDEARPRLALLTRGA 323

Query: 290 KKVVVPTQEDVAFNRRSRSAKLR 312
            +     QE    N RS S +LR
Sbjct: 324 GRAPASEQEK---NPRSASVRLR 343


>gi|315186407|gb|EFU20167.1| S-adenosyl-methyltransferase MraW [Spirochaeta thermophila DSM
           6578]
          Length = 324

 Score =  188 bits (478), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 117/300 (39%), Positives = 172/300 (57%), Gaps = 9/300 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77
           HVPVL E+V A L+   G +++DAT G GG+S +  +   G  ++ +D DP  +S   E 
Sbjct: 8   HVPVLREEVGAFLSVRDG-LVVDATLGEGGHSEALLESHPGIRLLGVDADPIMLSRAGER 66

Query: 78  MRDYKEQFSLFQATFSQLQDYVP--DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           +  + ++  L Q  F ++ +  P  D+ V G++ DLG+SS  ++   RGFSF +  PLDM
Sbjct: 67  LSRFGDRVRLVQGWFDEVLESFPAEDRPV-GILMDLGISSYHLEKSGRGFSFLRREPLDM 125

Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           R+S    + ASDVVN  +  +L  +    GEE  + RIA AIV  R+  P  T+  L+ +
Sbjct: 126 RLSPYLPMKASDVVNTYSETELVDVFSRFGEEPFSRRIARAIVSERRKMPITTSDHLAEV 185

Query: 195 IQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           + K V   ++  RIHPATR FQALRI VN E+E + + +R+  + L  GG + V+SFHSL
Sbjct: 186 VMKAVPPKARRGRIHPATRVFQALRIVVNKELERVERAVRAGVRLLAPGGRMAVISFHSL 245

Query: 254 EDRLVKKFFA-SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           EDR+VK+ F    S         I       + + +TKK V P +E+V  N  SRSA+LR
Sbjct: 246 EDRIVKRLFRFYASACTCPPEEPICRCGGQGIVEVLTKKPVRPGEEEVRTNPASRSARLR 305


>gi|71735888|ref|YP_276238.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|88909210|sp|Q48EF0|RSMH_PSE14 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|71556441|gb|AAZ35652.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320322458|gb|EFW78551.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320330073|gb|EFW86060.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330875017|gb|EGH09166.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 313

 Score =  188 bits (478), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 117/305 (38%), Positives = 177/305 (58%), Gaps = 16/305 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H+ VLLE+ +  L        LD TFG GG+SR    ++G +  ++  D+DP A++ GQ 
Sbjct: 7   HITVLLEEAVEALEVRADGCYLDGTFGRGGHSRLILSQLGPDGRLLGFDKDPQAIATGQ- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            +     +F + Q +F++L     ++G    V G++ DLGVSS Q+D  +RGFSF   GP
Sbjct: 66  ALAAEDGRFVIVQRSFAELGSEAQERGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDGP 125

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G+SA++ +  A  +++ R+    GEE+ A R+A+A+V RR+  PF+ T DL
Sbjct: 126 LDMRMDPTRGVSAAEFIATAPAEEIARVFKEYGEERFAKRMANAVVARREVQPFERTADL 185

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++ K    +     +PATR+FQ LRI VNNE+ +L  GL +A  AL+ GG L+V+SFH
Sbjct: 186 AEVL-KVANPAWEKGKNPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLVVISFH 244

Query: 252 SLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQ---SITKKVVVPTQEDVAFNRRSR 307
           SLEDR+VK F    + G+   +   +P    P  F+    I  K    +  +   N RSR
Sbjct: 245 SLEDRIVKLFMRKLAKGEADNMPRNLPIQFKP--FEPKIKIHGKAQFASDTETKANPRSR 302

Query: 308 SAKLR 312
           SA +R
Sbjct: 303 SAVMR 307


>gi|89099599|ref|ZP_01172474.1| S-adenosyl-methyltransferase MraW [Bacillus sp. NRRL B-14911]
 gi|89085752|gb|EAR64878.1| S-adenosyl-methyltransferase MraW [Bacillus sp. NRRL B-14911]
          Length = 310

 Score =  188 bits (478), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 117/308 (37%), Positives = 175/308 (56%), Gaps = 11/308 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
           DH  VLLE+ +A L+  P  V +D T G  G+S       S+   + A D+D  A+   Q
Sbjct: 3   DHKTVLLEETVAGLDIKPDGVYVDCTMGGAGHSELILTQLSSRGKLYAFDQDETAIENAQ 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E +  Y ++ ++ ++ F  L++ +   GV   DGV++DLGVSS Q+D  +RGFS+    P
Sbjct: 63  EKLSKYGDKITIIKSNFLHLKEELEKAGVTEVDGVLYDLGVSSPQLDTPERGFSYHHDAP 122

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM   + +SA +VVN    +DL RI    GEEK + +IA  I   R+ AP +TT  L
Sbjct: 123 LDMRMDKDASLSAYEVVNDWPYEDLVRIFFRYGEEKFSKQIARKIEAAREKAPIETTSQL 182

Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             LI+  +   ++    HPA R FQA+RI VN+E+    + L  A   LK GG + V++F
Sbjct: 183 VELIKDGIPAPARRKGGHPAKRVFQAIRIAVNDELGVFEKSLEQAIDILKPGGRISVITF 242

Query: 251 HSLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+ K  F  AS +  +     +IP    P V + + +K ++P++E++  N R+RS
Sbjct: 243 HSLEDRICKATFKKASETPPLPPGLPIIPDEFKP-VLKLVARKPILPSEEELEENNRARS 301

Query: 309 AKLRAGMR 316
           AKLR   +
Sbjct: 302 AKLRVAEK 309


>gi|291514761|emb|CBK63971.1| S-adenosyl-methyltransferase MraW [Alistipes shahii WAL 8301]
          Length = 300

 Score =  188 bits (478), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 124/307 (40%), Positives = 166/307 (54%), Gaps = 22/307 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H PVLLE+ + LL   P     D TFG GG+SR         I  D  P     G +  R
Sbjct: 5   HTPVLLEESVGLLAVEPAGTYADLTFGGGGHSRR--------ILSDLGPEGRLYGFDQDR 56

Query: 80  DYKE------QFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130
           D  E      +F   ++ F  L+  +  +GV   DG++ DLGVSS   D  +RGFSF+  
Sbjct: 57  DTLENRPDDARFHYVESNFRFLRGALRLRGVTEVDGILADLGVSSHHFDAVERGFSFRGE 116

Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM+  G ++A+DVVN    +DLTRILG  GE +   ++A+ +VK R +AP  TT 
Sbjct: 117 APLDMRMNQRGRLTAADVVNDYTAEDLTRILGDWGEVETPWKVANCLVKARAAAPVTTTA 176

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            L   ++      K +     T+ FQALRI VN E+E L   L  + + LK GG L+V+S
Sbjct: 177 QLVGAVKPCT--PKKDEAKFLTKLFQALRIEVNGEMEALKMALEQSLRVLKPGGRLVVIS 234

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           +HSLEDRLVK F   RSG               A F  +T+K V P+ E++  N RSRSA
Sbjct: 235 YHSLEDRLVKNFM--RSGNFSGQVEKDFFGRSQAPFDLVTRKAVTPSAEELDRNPRSRSA 292

Query: 310 KLRAGMR 316
           KLRA ++
Sbjct: 293 KLRAAVK 299


>gi|194468375|ref|ZP_03074361.1| S-adenosyl-methyltransferase MraW [Lactobacillus reuteri 100-23]
 gi|194453228|gb|EDX42126.1| S-adenosyl-methyltransferase MraW [Lactobacillus reuteri 100-23]
          Length = 318

 Score =  188 bits (478), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 121/306 (39%), Positives = 180/306 (58%), Gaps = 15/306 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77
           HV VLL++ +A LN  P    +DAT G GG++++  +  +  ++ + D+D  A+   +E 
Sbjct: 6   HVTVLLKEAVAGLNVQPTGTYVDATLGGGGHTQAILQQLVDGHLYSFDQDQTAIDYNKEH 65

Query: 78  MRDYKEQFSL------FQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           ++   EQ  L      F+   ++L  Y   K V+G+++DLGVSS Q D   RGFS+Q   
Sbjct: 66  LKTAIEQQKLTLVEDNFRNIKTELNSYNV-KRVNGILYDLGVSSPQFDDAKRGFSYQHDA 124

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+    +SA +VVN+   + L +IL   GEEK A  IA  I +RR+ AP +TT +
Sbjct: 125 PLDMRMNQEQKLSAMEVVNEWPYERLVKILYRYGEEKFAKSIARKIEQRRKIAPIKTTFE 184

Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I++ +   ++ +  HPA +SFQA+RI VN+E+  L + L  A   L  GG + V++
Sbjct: 185 LVDVIKEGIPAAARRHGGHPAKKSFQAIRIAVNDELGALEESLEQALDLLDVGGRISVIT 244

Query: 250 FHSLEDRLVKKFF---ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           F SLEDRLVK  F    S SG V     +IP+   P  F+ I KK +V + E++A N R+
Sbjct: 245 FQSLEDRLVKTMFREKTSLSGDVPQGLPVIPAGMEPD-FKLINKKPIVASDEELAANHRA 303

Query: 307 RSAKLR 312
            SAKLR
Sbjct: 304 HSAKLR 309


>gi|189501435|ref|YP_001960905.1| S-adenosyl-methyltransferase MraW [Chlorobium phaeobacteroides BS1]
 gi|263445802|sp|B3EQC6|RSMH_CHLPB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|189496876|gb|ACE05424.1| S-adenosyl-methyltransferase MraW [Chlorobium phaeobacteroides BS1]
          Length = 332

 Score =  188 bits (478), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 117/326 (35%), Positives = 187/326 (57%), Gaps = 33/326 (10%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--------GSNVIALDRDPFAV 71
           H+PV++ +V+A L    G + +D T G GG+S +  +         GS +I +D+D FA+
Sbjct: 7   HLPVMVREVVAWLVRRAG-IYVDGTLGGGGHSLAILRALRDKGLEKGSFLIGIDQDSFAI 65

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPD------KGVD--GVVFDLGVSSMQIDCGDR 123
           +  + T+  ++E+  L Q  F ++ D V        +G++  G++ DLGVSS QID  +R
Sbjct: 66  AEAERTLASFRERTRLVQGNFREIADIVSTLRENQLRGMEVAGILLDLGVSSFQIDTSER 125

Query: 124 GFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK-RRQ 181
           GFS+ +SGPLDMRM    G SA+D+VN    ++L  I    GEEK++ RIA AI   R +
Sbjct: 126 GFSYLRSGPLDMRMEPDEGQSAADIVNTFEERELADIFFRFGEEKKSRRIASAICSWRNE 185

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
               + TQDL+++++  V    + +I   +R FQALRI VN+E+  L   L+    +L  
Sbjct: 186 RGVIRGTQDLAAIVRSVVSVP-DQQIKSLSRIFQALRIAVNDELGALESALKEGAASLSP 244

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSG-----KVMAVRHMIPSNAHPAVFQSITKKVVVPT 296
            G + V+S+HS+EDR+VK +F + +      K +A+R  +    H A F  +T+K ++  
Sbjct: 245 QGRMAVMSYHSIEDRMVKHYFRTLAADDWGPKGVALREPL----HKAAFTLVTRKALIAG 300

Query: 297 QEDVAFNRRSRSAKLRAGMRTVERSI 322
            ++V  N R+RSAK    MR +ER +
Sbjct: 301 DDEVNENSRARSAK----MRVIERKM 322


>gi|182626151|ref|ZP_02953911.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens D str.
           JGS1721]
 gi|177908588|gb|EDT71113.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens D str.
           JGS1721]
          Length = 310

 Score =  188 bits (478), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 118/308 (38%), Positives = 176/308 (57%), Gaps = 22/308 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           HV VLL++ I  LN     + +D T G  G+S    K  S+   +I  D+D  A+    E
Sbjct: 5   HVSVLLDECINALNIKEDGIYVDCTLGGAGHSSEIVKRLSSDGRLIGFDQDKDALKAAGE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++DYK   +   + F  + D + D    GVDG++ DLGVSS Q+D G+RGFS+ +  PL
Sbjct: 65  RLKDYK-NVTYVHSNFYAIYDVLTDLGIDGVDGILMDLGVSSYQLDNGERGFSYMQDAPL 123

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+     SA ++VN  + ++L RI+   GEEK A RIA  IVK R+    ++T +L 
Sbjct: 124 DMRMNRENEFSAYEIVNTYSEEELYRIIKEYGEEKFAKRIASFIVKNREEKNIESTLELV 183

Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  +   ++    HPA R+FQA+RI VN E+E +++ +    K L  GG + +++FH
Sbjct: 184 EIIKAAIPAKARREGPHPAKRTFQAIRIEVNKELEIISKTILDGVKKLNKGGRMAIITFH 243

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPS-------NAHPAVFQSITKKVVVPTQEDVAFNR 304
           SLEDR+VK  F     K +A     PS       N  P V + I++K +  ++E++ FN 
Sbjct: 244 SLEDRIVKNTF-----KELANPCTCPSEFPVCVCNRKPEV-KLISRKPIEASKEELEFNP 297

Query: 305 RSRSAKLR 312
           RSRSAKLR
Sbjct: 298 RSRSAKLR 305


>gi|328957120|ref|YP_004374506.1| S-adenosyl-methyltransferase MraW [Carnobacterium sp. 17-4]
 gi|328673444|gb|AEB29490.1| S-adenosyl-methyltransferase MraW [Carnobacterium sp. 17-4]
          Length = 318

 Score =  188 bits (478), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 113/306 (36%), Positives = 175/306 (57%), Gaps = 13/306 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
           +H  VLL + +  L+ +P  + +D T G  G+S           ++ A D+D  A+   +
Sbjct: 5   NHETVLLRETVDGLSLSPEGIYVDCTLGGAGHSEYLLSQLDENGHLFAFDQDERAIENAK 64

Query: 76  ETMRDYKEQ--FSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
             + +Y E+   +  +A F  +++ + ++G   VDG+++DLGVSS Q+D  +RGFS+ + 
Sbjct: 65  VRLAEYVEKGMVTFIKANFRNIKEELTERGINEVDGILYDLGVSSPQLDEAERGFSYHQD 124

Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM     ++A DVVN+ +  DL RI    GEEK + +IA  I   R+  P +TT 
Sbjct: 125 APLDMRMDTDAPLTAKDVVNEWSYHDLIRIFYRYGEEKFSKQIARKIEAAREIKPIETTS 184

Query: 190 DLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  LI+  +   ++    HPA R FQA+RI VN+E+  +   L  A + L  GG + V+
Sbjct: 185 ELVELIKSGIPAPARRKGGHPAKRVFQAIRIAVNDELSSVEDSLEQAIELLAIGGRISVI 244

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           SFHSLEDR+VK  F   S      R +  IP    P + + IT+K ++P++E++A N RS
Sbjct: 245 SFHSLEDRIVKTIFKDHSKGPELPRGLPVIPDGFLPEL-KLITRKPILPSEEELAVNNRS 303

Query: 307 RSAKLR 312
           RSAKLR
Sbjct: 304 RSAKLR 309


>gi|66047337|ref|YP_237178.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv.
           syringae B728a]
 gi|75500766|sp|Q4ZNY2|RSMH_PSEU2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|63258044|gb|AAY39140.1| methyltransferase [Pseudomonas syringae pv. syringae B728a]
          Length = 313

 Score =  188 bits (478), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 118/305 (38%), Positives = 176/305 (57%), Gaps = 16/305 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H+ VLLE+ +  L        LD TFG GG+SR    ++G +  ++  D+DP A++ GQ 
Sbjct: 7   HITVLLEEAVEALAVRADGCYLDGTFGRGGHSRLILSQLGPDGRLLGFDKDPQAIATGQ- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            +     +F + Q +F++L     ++G    V G++ DLGVSS Q+D  +RGFSF   GP
Sbjct: 66  ALAAEDGRFVIVQRSFAELGSETQERGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDGP 125

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM    GISA++ +  A  +++ R+    GEE+ A R+A+A+V RR+  PF+ T DL
Sbjct: 126 LDMRMDPARGISAAEFIATAPAEEIARVFKEYGEERFAKRMANAVVARREVQPFERTADL 185

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++ K    +     +PATR+FQ LRI VNNE+ +L  GL +A  AL+ GG L+V+SFH
Sbjct: 186 AEVL-KVANPAWEKGKNPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLVVISFH 244

Query: 252 SLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQ---SITKKVVVPTQEDVAFNRRSR 307
           SLEDR+VK F    + G+   +   +P    P  F+    I  K    +  +   N RSR
Sbjct: 245 SLEDRIVKLFMRKLAKGEADNMPRNLPIQFKP--FEPKIKIHGKAQFASDAETKANPRSR 302

Query: 308 SAKLR 312
           SA +R
Sbjct: 303 SAVMR 307


>gi|329944591|ref|ZP_08292731.1| S-adenosyl-methyltransferase MraW [Actinomyces sp. oral taxon 170
           str. F0386]
 gi|328530144|gb|EGF57027.1| S-adenosyl-methyltransferase MraW [Actinomyces sp. oral taxon 170
           str. F0386]
          Length = 368

 Score =  188 bits (478), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 121/327 (37%), Positives = 181/327 (55%), Gaps = 32/327 (9%)

Query: 18  GDHVPVLLEKVIALLNPA-------------PGKVILDATFGAGGYSRSFCKMGS--NVI 62
           G H PVLL++ + LL PA              G V++D T G GG++ +  +      V+
Sbjct: 13  GRHEPVLLQRCLDLLAPAIERAAEDTSRGSAAGPVMIDCTLGMGGHTEAALERFPYLTVV 72

Query: 63  ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV------DGVVFDLGVSSM 116
            +DRDP A++     +  + ++F   QAT+  +     D  V      D V+ DLGVSS+
Sbjct: 73  GIDRDPEAITLASARLERFGDRFVAVQATYDAVDRVARDHSVSAEGTVDAVLMDLGVSSL 132

Query: 117 QIDCGDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175
           Q+D   RGFS+ +  PLDMRM   SG +A D++  A+  +LTRIL   GEE+ ASRIA A
Sbjct: 133 QLDEASRGFSYARPAPLDMRMDQSSGPTAQDLLESADSAELTRILRTYGEERFASRIATA 192

Query: 176 IVKRRQSA-PFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLR 233
           IV+RR++  P  +TQDL+ L+++ V   ++ +  HPA R+FQALRI VN E++ L + + 
Sbjct: 193 IVRRREAGEPASSTQDLAELVRQAVPAPARRSGGHPAKRTFQALRIAVNAELDVLERAVP 252

Query: 234 SAEKALKAGGLLIVVSFHSLEDRLVKKFF----ASRSGKVMAVRHMIPSNAHPAVFQSIT 289
            A  +L+ GG L+V S+ SLEDR+VK+       SR+ + + V   +P    P   + IT
Sbjct: 253 RALNSLRVGGRLVVESYQSLEDRIVKRALNHGATSRAPQGLPV---VPEADRP-YLELIT 308

Query: 290 KKVVVPTQEDVAFNRRSRSAKLRAGMR 316
                    ++  N RS   +LRA  R
Sbjct: 309 SGAEKADARELEHNPRSAPVRLRAVAR 335


>gi|138894646|ref|YP_001125099.1| S-adenosyl-methyltransferase MraW [Geobacillus thermodenitrificans
           NG80-2]
 gi|196247745|ref|ZP_03146447.1| S-adenosyl-methyltransferase MraW [Geobacillus sp. G11MC16]
 gi|263455979|sp|A4IM00|RSMH_GEOTN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|134266159|gb|ABO66354.1| S-adenosyl-methyltransferase MraW [Geobacillus thermodenitrificans
           NG80-2]
 gi|196212529|gb|EDY07286.1| S-adenosyl-methyltransferase MraW [Geobacillus sp. G11MC16]
          Length = 310

 Score =  188 bits (477), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 119/303 (39%), Positives = 175/303 (57%), Gaps = 11/303 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN  P  V +D T G GG+S       S    + A D+D  A+    E
Sbjct: 4   HTTVLLKEAVDGLNVRPDGVYVDCTLGGGGHSEYLLSRLSKRGKLFAFDQDETAILHASE 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  Y+EQ       F  LQ+ +   G   VDG++FDLGVSS Q+D  +RGFS+Q   PL
Sbjct: 64  RLARYREQVQFINRNFRFLQEELSALGIHAVDGILFDLGVSSPQLDEPERGFSYQHDAPL 123

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     ++A+++VN+   ++L RI    GEEK + ++A  I + R+  P +TT +L 
Sbjct: 124 DMRMDRKQRLTAAEIVNRWPYEELVRIFFRYGEEKFSKQVARKIEEVRRKRPIETTGELV 183

Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  +   ++ +  HPA R FQALRI VN+E+E   + L  A + L  GG + V++FH
Sbjct: 184 EVIKAAIPAPARRSGGHPAKRIFQALRIAVNDELEAFREALEQAIELLAPGGRVSVITFH 243

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+ K+ F  AS S  +     ++P +  P V + ITKK VVP+ E++  N R+RSA
Sbjct: 244 SLEDRICKETFKKASESPPLPPGLPVLPDDYRP-VLKIITKKPVVPSAEELERNNRARSA 302

Query: 310 KLR 312
           KLR
Sbjct: 303 KLR 305


>gi|320106390|ref|YP_004181980.1| S-adenosyl-methyltransferase MraW [Terriglobus saanensis SP1PR4]
 gi|319924911|gb|ADV81986.1| S-adenosyl-methyltransferase MraW [Terriglobus saanensis SP1PR4]
          Length = 319

 Score =  188 bits (477), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 131/326 (40%), Positives = 182/326 (55%), Gaps = 33/326 (10%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HVPVL ++V+  LN   G    DAT G GG+S    ++      +I  DRDP A++  + 
Sbjct: 6   HVPVLYDEVLNFLNVRAGGTYADATLGLGGHSSGIARLLGAKGTLICFDRDPEAMTKAKA 65

Query: 77  -------TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
                   + D           FS+ +D +    +DG++ D GVSS+Q+D   RGFSF+ 
Sbjct: 66  RFEALAVELGDTMPTVRFEPRAFSEAKDVIKPGSLDGLLADFGVSSLQLDEAHRGFSFRF 125

Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM   SG +A  VVNQA+ ++L  ++   GEE+++ RIA AIV+ R   P +TT
Sbjct: 126 EGPLDMRMDTRSGETAEQVVNQADEEELANLIYEFGEERRSRRIARAIVRAR---PIRTT 182

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ +I       K+++IHPATR+FQALRI VN+E+ E+   L SA   LK GG L V+
Sbjct: 183 AELAKVISVAAPSMKSDKIHPATRTFQALRIRVNDELGEIRTLLESAPSLLKVGGRLAVI 242

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDRLVK   A+R G            A   ++  I KK +   ++++  N RSRS
Sbjct: 243 SFHSLEDRLVKD--ATRDG------------ARDGIWNLIEKKPITAGEDEIQRNPRSRS 288

Query: 309 AKLRAGMRTVERSIEDDSFVHLPRLP 334
           AKLR   R     I D  FV   +LP
Sbjct: 289 AKLRVAER-----IADTGFVVKRKLP 309


>gi|164686379|ref|ZP_02210409.1| hypothetical protein CLOBAR_02817 [Clostridium bartlettii DSM
           16795]
 gi|164601981|gb|EDQ95446.1| hypothetical protein CLOBAR_02817 [Clostridium bartlettii DSM
           16795]
          Length = 311

 Score =  188 bits (477), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 116/309 (37%), Positives = 172/309 (55%), Gaps = 13/309 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
           +HV VLL++ I  LN     V +D T G  G+S+   K  S     I  D+D  A++  +
Sbjct: 4   NHVSVLLDECIDNLNIKEDGVYVDCTMGGAGHSKEIVKRLSKDGLFIGFDQDKNAIATAK 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E + +Y ++     + FS +++ +   GV   DGV+ DLGVSS Q+D  DRGFS+    P
Sbjct: 64  ERLAEYSDRVRFVHSNFSNIKEELEKIGVYKIDGVLADLGVSSHQLDEADRGFSYMHDAP 123

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM      SA DVVN    + L +I+   GE+  A RIA  IV+ R+  P + T +L
Sbjct: 124 LDMRMDIRKPFSAYDVVNTYTEEQLAKIIKDYGEDNWAKRIAKFIVETREEKPIEKTGEL 183

Query: 192 SSLIQKTVYFSKNNRI---HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             +I+K +   K  RI   HPA R+FQA+RI VNNE+  + + +  A   +  GG + ++
Sbjct: 184 VDIIKKAI--PKKARIDGPHPAKRTFQAIRIEVNNELGVINKMIDDAVSMMNKGGRICII 241

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+VK  F   S   +    + I      +  + IT+K ++P++E+V  N RSR
Sbjct: 242 TFHSLEDRIVKNEFKELSLSCVCPPELPICRCDKVSEVKVITRKPILPSKEEVEANPRSR 301

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 302 SAKLRVAEK 310


>gi|329924124|ref|ZP_08279357.1| S-adenosyl-methyltransferase MraW [Paenibacillus sp. HGF5]
 gi|328940856|gb|EGG37166.1| S-adenosyl-methyltransferase MraW [Paenibacillus sp. HGF5]
          Length = 317

 Score =  188 bits (477), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 112/309 (36%), Positives = 173/309 (55%), Gaps = 16/309 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+ VL ++    L   P  + +D T G  G+S       S+   +IALD+D +A++  +E
Sbjct: 4   HITVLKQEATEGLRIKPDGIYVDCTLGGAGHSSLIASQLSSEGRLIALDQDDWALNNARE 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK---------GVDGVVFDLGVSSMQIDCGDRGFSF 127
            M+ Y ++ +L +  F  L++ +  +          VDG++FDLGVSS Q D G+RGFS+
Sbjct: 64  AMKPYADRITLVKTNFRDLEEVLRSEVGAGENGQPQVDGILFDLGVSSPQFDEGERGFSY 123

Query: 128 QKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
               PLDMRM  S  ++A+ +VN+   +++ RIL   GEEK + RIA  IV+RR  +P Q
Sbjct: 124 NHDAPLDMRMDQSAELTAAKIVNEWPEQEIARILYQYGEEKFSRRIAKVIVERRAQSPIQ 183

Query: 187 TTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           TT +L  +I++ +   ++    HPA RSFQA RI VN+E+      L  A + L  GG +
Sbjct: 184 TTGELVEMIKEGIPAAARRTGGHPAKRSFQAFRIAVNDELGAFEDALHQAVRCLAPGGRV 243

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            V++FHSLEDR+ K+ F S   K        M          + + +K ++P+ E++  N
Sbjct: 244 SVITFHSLEDRICKQIFNSYIPKCTCPPDFPMCVCGGGQGDLKLVNRKPLIPSAEEIESN 303

Query: 304 RRSRSAKLR 312
            R+RSAKLR
Sbjct: 304 PRARSAKLR 312


>gi|110833451|ref|YP_692310.1| methyltransferase [Alcanivorax borkumensis SK2]
 gi|123345754|sp|Q0VS10|RSMH_ALCBS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|110646562|emb|CAL16038.1| methyltransferase [Alcanivorax borkumensis SK2]
          Length = 312

 Score =  188 bits (477), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 116/300 (38%), Positives = 173/300 (57%), Gaps = 10/300 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQE 76
           H PV+LE+V+ +         +D TFG GG+SR+   ++G N  +I +DRDP A++ GQ+
Sbjct: 10  HQPVMLEEVLDMWFSQSEGFYVDGTFGRGGHSRALLSRLGENGRLIGIDRDPQAIAAGQQ 69

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
            +     +F +    F  L   V   G  +DG++ DLGVSS Q+D   RGFSF + GPLD
Sbjct: 70  -LAASDSRFHMMAGRFDCLPQAVEQAGRPIDGLLLDLGVSSPQLDDAARGFSFLRDGPLD 128

Query: 135 MRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM    G S ++ ++ A  KD+  +L   GEE+++  IA  I + R+  P   T  L+ 
Sbjct: 129 MRMDPTQGESVAEWLSYAAEKDIANVLYRYGEERKSRWIAKRICETRKEQPITRTLQLAD 188

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           LI+  +  ++  + HPATRSFQALRI +N E++ L Q L  + + L  GG L ++SFHSL
Sbjct: 189 LIESVLGRNEQGK-HPATRSFQALRIHINGELDALDQVLEQSLETLAIGGRLAIISFHSL 247

Query: 254 EDRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           EDR+VK F    SG+    R  +P  +  P   + +  KV+  ++ ++  N RSRSA LR
Sbjct: 248 EDRIVKLFIRDHSGRAPKGRGGLPLGDELPQRLEPVG-KVMRASKAELKVNVRSRSAVLR 306


>gi|254449029|ref|ZP_05062483.1| S-adenosyl-methyltransferase MraW [gamma proteobacterium HTCC5015]
 gi|198261423|gb|EDY85714.1| S-adenosyl-methyltransferase MraW [gamma proteobacterium HTCC5015]
          Length = 309

 Score =  188 bits (477), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 124/306 (40%), Positives = 170/306 (55%), Gaps = 12/306 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMG--SNVIALDRDPFAVSCGQ 75
           +HVPVLL + I  L      V LD TFG GG+S +   ++G    + A+DRD  AV   Q
Sbjct: 6   EHVPVLLAEAIEGLRIEENGVYLDGTFGRGGHSAAILSQLGVDGQLHAIDRDRAAVDVAQ 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGV----DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +   +   +FS+    FSQL  Y   +G+    +GV+ D+GVSS QID   RGFSFQ  G
Sbjct: 66  QRFAE-DARFSIHHGEFSQLDQYCEQRGLAGRLNGVLLDIGVSSPQIDDPGRGFSFQFDG 124

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + G +A+  +  A   ++ R+L   GEE+ A RIA AI +  Q    +TTQ 
Sbjct: 125 PLDMRMDQTRGETAAQWLVSAEASEIARVLKEFGEERNAKRIASAIKRTLQERSIETTQG 184

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L ++I+        ++ HPATRSFQALRI VN+E+  L + L +A + L  GG L V+SF
Sbjct: 185 LVAVIESATRVRDRHK-HPATRSFQALRIQVNDEMGALRRALDAAVRMLAPGGRLAVISF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDR+VK+F    S      R + P        +S+ K +     E +  N R+RSA 
Sbjct: 244 HSLEDRMVKRFIRDESTPREVARGL-PQKTDHIRLKSVGKAIKAGESE-LKKNPRARSAV 301

Query: 311 LRAGMR 316
           LR   R
Sbjct: 302 LRVAER 307


>gi|325578829|ref|ZP_08148876.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Haemophilus parainfluenzae ATCC 33392]
 gi|325159653|gb|EGC71785.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Haemophilus parainfluenzae ATCC 33392]
          Length = 322

 Score =  188 bits (477), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 125/314 (39%), Positives = 175/314 (55%), Gaps = 20/314 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQ 75
           +H+ VLL + +  L      + +D TFG GG+SR   S       +IA+DRDP A++   
Sbjct: 11  EHITVLLHEAVNGLALKENGIYIDGTFGRGGHSRLILSQLSENGRLIAVDRDPRAIAEA- 69

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           E ++D +  F +   +FS + D          +DG++ DLGVSS Q+D  DRGFSF K G
Sbjct: 70  EKIQDPR--FHIEHNSFSHIPDICQKLDLVGKIDGILLDLGVSSPQLDEADRGFSFMKDG 127

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP------ 184
           PLDMRM  + G+SA++ + Q +V DLT +L   GEE+ A RIA AIV+  + A       
Sbjct: 128 PLDMRMDTTQGLSAAEWLKQVSVDDLTWVLKTFGEERFAKRIATAIVEFNKRAIKNGTEC 187

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
              T  L+ LI + V F K+   HPATRSFQA+RI++N E++EL   L SA   L   G 
Sbjct: 188 LSRTSQLAELIAQAVPF-KDKHKHPATRSFQAIRIYINAELDELESVLNSALDMLAPEGR 246

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ--SITKKVVVPTQEDVAF 302
           L ++SFHSLEDR+VK F   +S      R +          Q   I  K + P++ +++ 
Sbjct: 247 LSIISFHSLEDRMVKHFMRKQSKGDDIPRGLPLREDQIQRNQKLKIIGKAIQPSEAEISA 306

Query: 303 NRRSRSAKLRAGMR 316
           N RSRSA LR   R
Sbjct: 307 NPRSRSAVLRIAER 320


>gi|49478448|ref|YP_037980.1| S-adenosyl-methyltransferase MraW [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|54036189|sp|Q6HEP6|RSMH_BACHK RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|49330004|gb|AAT60650.1| S-adenosyl-methyltransferase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 310

 Score =  188 bits (477), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 114/304 (37%), Positives = 175/304 (57%), Gaps = 11/304 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
           +HV VLL++ +  L+  P    +D T G GG+S         G  +IA D+D  A+   +
Sbjct: 3   NHVTVLLKETVDGLDIKPDGTYVDCTLGGGGHSSYLLSQLTEGGRLIAFDQDEIAIQNAK 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E    Y EQF   ++ F  L + + + G   VDG++FDLGVSS Q+D  +RGFS+    P
Sbjct: 63  EKFSSYGEQFITVKSNFRYLSEKLQELGITEVDGILFDLGVSSPQLDTPERGFSYHHDAP 122

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM   + ++A DVVN  + + L RI    GEEK + +IA  I   R++   +TT +L
Sbjct: 123 LDMRMDQDASLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTGEL 182

Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             LI++ +   ++    HPA R FQA+RI VN+E++   + L SA + +K GG + V++F
Sbjct: 183 VELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRVSVITF 242

Query: 251 HSLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+ K  F   S + ++     +IP    P + + IT+K ++P+  ++  N R+RS
Sbjct: 243 HSLEDRICKTTFKRNSTTPQLPPGLPIIPDEFKPKL-KLITRKPILPSDIELEENNRARS 301

Query: 309 AKLR 312
           AKLR
Sbjct: 302 AKLR 305


>gi|116873471|ref|YP_850252.1| S-adenosyl-methyltransferase MraW [Listeria welshimeri serovar 6b
           str. SLCC5334]
 gi|123461323|sp|A0AKE1|RSMH_LISW6 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|116742349|emb|CAK21473.1| S-adenosyl-methyltransferase [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 312

 Score =  188 bits (477), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 109/303 (35%), Positives = 177/303 (58%), Gaps = 11/303 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGS--NVIALDRDPFAVSCGQE 76
           H  VLL + + +L   P  + +DAT G  G+S     K+    ++ A D+D  A+   + 
Sbjct: 4   HETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEQGHLFAFDQDQTAIDNAKM 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + DY ++ +  +A F  +++ + ++G   VDG+++DLGVSS Q+D  +RGFS+ +   L
Sbjct: 64  KLADYSDKVTFIKANFRYMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQDAAL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     ++A  VVN+ + +DL RI    GEEK + +IA  I +RR+  P +TT +L 
Sbjct: 124 DMRMDQEQELTAKIVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTGELV 183

Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  +   ++    HP  R+FQA+RI VN+E+  +   L  A   LK GG + V++FH
Sbjct: 184 DIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLLKPGGRISVITFH 243

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+ K  F  A++  ++     +IP    P  F+  T+K +VP++E++  N R+RSA
Sbjct: 244 SLEDRITKHLFQEATKGPELPPGLPVIPDEYKPD-FKLATRKPIVPSEEELEQNNRARSA 302

Query: 310 KLR 312
           KLR
Sbjct: 303 KLR 305


>gi|145639350|ref|ZP_01794956.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae PittII]
 gi|145271653|gb|EDK11564.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae PittII]
 gi|309751224|gb|ADO81208.1| 16S rRNA m(4)C1402 methyltranserfase [Haemophilus influenzae R2866]
          Length = 321

 Score =  188 bits (477), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 127/318 (39%), Positives = 180/318 (56%), Gaps = 30/318 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQE 76
           H+ VLL + +  L      + +D TFG GG+SR    ++ SN  +IA+DRDP A++   E
Sbjct: 12  HITVLLHEAVNGLALKENGIYIDGTFGRGGHSRFILSQLSSNGRLIAVDRDPRAIA---E 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
             +    +F +   +FS + + + DK      ++G++ DLGVSS Q+D  +RGFSF K G
Sbjct: 69  AHKIQDSRFQIEHNSFSHIPE-ICDKLNLVGKINGILLDLGVSSPQLDEAERGFSFMKDG 127

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP------ 184
           PLDMRM  + G+SA + + Q +++DLT +L   GEE+ A RIA AIV   +SA       
Sbjct: 128 PLDMRMDTTQGLSAEEWLKQVSIEDLTWVLKTFGEERFAKRIATAIVDFNKSAVKNGTEF 187

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
              T  L+ LI + V F K+   HPATRSFQA+RIF+N+E++EL   L SA   L   G 
Sbjct: 188 LSRTSQLAELISQAVPF-KDKHKHPATRSFQAIRIFINSELDELESLLNSALDMLAPEGR 246

Query: 245 LIVVSFHSLEDRLVKKFFASRSG-----KVMAVRH-MIPSNAHPAVFQSITKKVVVPTQE 298
           L ++SFHSLEDR+VK F   +S      K + +R   I  N        I  K + P+  
Sbjct: 247 LSIISFHSLEDRMVKHFMKKQSKGEDIPKGLPLREDQIQRNQK----LRIIGKAIQPSDA 302

Query: 299 DVAFNRRSRSAKLRAGMR 316
           ++  N RSRSA LR   R
Sbjct: 303 EIQANPRSRSAILRVAER 320


>gi|302386836|ref|YP_003822658.1| S-adenosyl-methyltransferase MraW [Clostridium saccharolyticum WM1]
 gi|302197464|gb|ADL05035.1| S-adenosyl-methyltransferase MraW [Clostridium saccharolyticum WM1]
          Length = 312

 Score =  188 bits (477), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 112/313 (35%), Positives = 184/313 (58%), Gaps = 28/313 (8%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGS--NVIALDRDPFAVSCGQ 75
           +H  VLL + I  LN  P  + +D T G GG++   CK +G+   +I +D+D  A+    
Sbjct: 4   EHKSVLLYETIDSLNVKPDGIYVDGTLGGGGHALEVCKRLGTYGRLIGIDQDGDAIKAAA 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS-G 131
           E ++DY+++ ++ ++ +  +Q  + D G   VDG+  DLGVSS Q+D  +RGF++++   
Sbjct: 64  ERLKDYEDKVTVVRSNYENIQTVLKDLGIEKVDGIYLDLGVSSYQLDKPERGFTYREDDA 123

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM   +  +A+D++N  +  DL RI+   GE+K A  IA  IV+ RQ  P +TT +
Sbjct: 124 PLDMRMDQRNEQTAADIINSYSEFDLYRIIRDYGEDKFAKNIAKHIVRARQGKPIETTGE 183

Query: 191 LSSLIQKTVYFSKNNRI-----HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           L+ +I++ +      R+     HP+ R+FQA+RI +N E+E L + L +    L  GG L
Sbjct: 184 LTEIIKEAI----PARVRAVGGHPSKRTFQAIRIELNKELEVLNKSLDTMIDLLNPGGRL 239

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF------QSITKKVVVPTQED 299
            +++FHSLEDR+VK  F +     +      PS+    V       + IT+K +VP++E+
Sbjct: 240 SIITFHSLEDRMVKTRFRTNENPCIC-----PSDFPVCVCGRKSKGKVITRKPIVPSEEE 294

Query: 300 VAFNRRSRSAKLR 312
           +  N+RS+S+KLR
Sbjct: 295 IEENKRSKSSKLR 307


>gi|330964049|gb|EGH64309.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 313

 Score =  188 bits (477), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 118/307 (38%), Positives = 178/307 (57%), Gaps = 20/307 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76
           H+ VLLE+ +  L   P    LD TFG GG+SR   S       ++  D+DP A++ GQ 
Sbjct: 7   HITVLLEEAVEALAVRPDGCYLDGTFGRGGHSRLILSHLGPDGRLLGFDKDPQAIATGQ- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            +     +F + Q +F++L     + G    V G++ DLGVSS Q+D  +RGFSF   GP
Sbjct: 66  ALAAEDGRFVIVQRSFAELGSQAQELGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDGP 125

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G+SA++ +  A  +++ R+    GEE+ A R+A+A+V+RR+  PF+ T DL
Sbjct: 126 LDMRMDPTRGVSAAEFIASAPAEEIARVFKEYGEERFAKRMANAVVQRREIQPFERTADL 185

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++ K    +     +PATR+FQ LRI VNNE+ +L  GL +A ++L+ GG L+V+SFH
Sbjct: 186 AEVL-KVANPAWEKGKNPATRAFQGLRIHVNNELGDLEAGLEAAMESLEIGGRLVVISFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA------FNRR 305
           SLEDR+V K F  +  K  A    +P N  P  +++   K+ +  +   A       N R
Sbjct: 245 SLEDRIV-KLFMRKLAKGEA--DNMPRNL-PIQYKAFEPKIKIHGKAQFASDVETKANPR 300

Query: 306 SRSAKLR 312
           SRSA +R
Sbjct: 301 SRSAVMR 307


>gi|261839470|gb|ACX99235.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori 52]
          Length = 302

 Score =  188 bits (477), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 119/302 (39%), Positives = 177/302 (58%), Gaps = 16/302 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVSCGQET 77
           H  VLL++V+    P    V++D T G GG+S++    K    +I +D+D FA    +E 
Sbjct: 2   HQSVLLQEVLQAFAPLEEGVLIDCTLGLGGHSKAILSQKPHLKLIGIDKDKFAQEIAKER 61

Query: 78  MRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++ ++ +++L    F++  ++ +   G  + GV+ DLGVSS+Q+D  +RGF+F  S  LD
Sbjct: 62  LKAFEGRYNLLSGGFAKRFKEALETHGKEIKGVLVDLGVSSLQLDDDNRGFNFH-SHALD 120

Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM   G ++A  V+N   V  L +I    GE K+  +IAH I +RR   PF+  +DLS 
Sbjct: 121 MRMDLEGDLNAQKVINSYPVVALEKIFKDYGEIKEYKKIAHKIAERRAKKPFKDAKDLSD 180

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
            +      SKN +IHPAT  FQA+RI VN E+EEL + L+ A + LK G +L V+SFHSL
Sbjct: 181 FLSS---LSKNKKIHPATLVFQAVRIEVNRELEELKEFLQCA-RNLK-GAILCVISFHSL 235

Query: 254 EDRLVKKFFASRSGKVMA---VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           ED LVK  F   +   +          SN H A+ + +TKK + P+ E++  NRRSRSAK
Sbjct: 236 EDSLVKNAFKDYAKNCICDPLSFKCTCSNNH-ALGEILTKKPITPSPEEIKNNRRSRSAK 294

Query: 311 LR 312
           +R
Sbjct: 295 MR 296


>gi|229092966|ref|ZP_04224098.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus Rock3-42]
 gi|228690420|gb|EEL44205.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus Rock3-42]
          Length = 310

 Score =  188 bits (477), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 114/304 (37%), Positives = 174/304 (57%), Gaps = 11/304 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
           +HV VLL++ +  L+  P    +D T G GG+S         G  +IA D+D  A+   +
Sbjct: 3   NHVTVLLKETVDGLDIKPDGTYVDCTLGGGGHSSYLLSQLTEGGRLIAFDQDEIAIQNAK 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E    Y EQF   ++ F  L + + + G   VDG++FDLGVSS Q+D  +RGFS+    P
Sbjct: 63  EKFSSYGEQFITVKSNFRYLSEKLQELGITEVDGILFDLGVSSPQLDTPERGFSYHHDAP 122

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM     ++A DVVN  + + L RI    GEEK + +IA  I   R++   +TT +L
Sbjct: 123 LDMRMDQDAPLTAYDVVNNWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTGEL 182

Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             LI++ +   ++    HPA R FQA+RI VN+E++   + L SA + +K GG + V++F
Sbjct: 183 VELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRVSVITF 242

Query: 251 HSLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+ K  F   S + ++     +IP    P + + IT+K ++P+  ++  N R+RS
Sbjct: 243 HSLEDRICKTTFKRNSTTPQLPPGLPIIPDEFKPKL-KLITRKPILPSDIELEENNRARS 301

Query: 309 AKLR 312
           AKLR
Sbjct: 302 AKLR 305


>gi|326797507|ref|YP_004315326.1| ribosomal RNA small subunit methyltransferase H [Sphingobacterium
           sp. 21]
 gi|326548271|gb|ADZ76656.1| Ribosomal RNA small subunit methyltransferase H [Sphingobacterium
           sp. 21]
          Length = 303

 Score =  188 bits (477), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 118/302 (39%), Positives = 174/302 (57%), Gaps = 16/302 (5%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCG 74
           G H+PV+L++ I  L   P  V +D TFG GG+S +  + +G    +IA D+DP A++  
Sbjct: 4   GYHLPVMLQECIEALAIKPNGVYVDVTFGGGGHSSAIIQHLGEEGRLIAFDQDPDALN-- 61

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
              + D  E+F+L    F  L++ +  +G   VDG++ DLGVSS Q D  +RGFS +   
Sbjct: 62  -NALPD--ERFTLIHQNFRYLKNNLRLQGLKQVDGILADLGVSSHQFDEAERGFSIRFDA 118

Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM   G + A  ++N  + +DL RI G+ GE + A  +A  IV  R S P  T  D
Sbjct: 119 DLDMRMDRVGELDAKGILNSYSEEDLHRIFGMYGEVQNAKSLAKVIVTSRLSRPINTVSD 178

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L S++ K V   K N+ +   + FQALRI VN E+E L + L  A+  LK GG L+V+S+
Sbjct: 179 LKSIVSKLVPRGKENKYY--AQLFQALRIEVNKELEALQEFLVQAQAVLKPGGRLVVMSY 236

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDRLVK F A    K    +    +   P  F  +++K ++ +++++  N R+RSAK
Sbjct: 237 HSLEDRLVKNFMAKGKFKGEVEKDFYGNEIKP--FMLVSRKAIIASEDEIRQNNRARSAK 294

Query: 311 LR 312
           LR
Sbjct: 295 LR 296


>gi|270157407|ref|ZP_06186064.1| S-adenosyl-methyltransferase MraW [Legionella longbeachae D-4968]
 gi|289164199|ref|YP_003454337.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Legionella longbeachae NSW150]
 gi|269989432|gb|EEZ95686.1| S-adenosyl-methyltransferase MraW [Legionella longbeachae D-4968]
 gi|288857372|emb|CBJ11200.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Legionella longbeachae NSW150]
          Length = 308

 Score =  188 bits (477), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 113/312 (36%), Positives = 175/312 (56%), Gaps = 22/312 (7%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS---FCKMGSNVIALDRDPFAVSC 73
           +  H  VLL + I  L      +  D TFG GG+S+    F      + A+D+D  A+  
Sbjct: 1   MATHQSVLLHESITGLAIKSDGIYFDGTFGRGGHSKEILRFLNEEGRLYAIDKDLDAIMY 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGV----DGVVFDLGVSSMQIDCGDRGFSFQK 129
            +E   D  ++F +FQ ++++++ +  + GV    DG++ DLGVSS Q+D  +RGFSF +
Sbjct: 61  AKEHF-DQDKRFHIFQGSYAKIEQFATEAGVLGMVDGILLDLGVSSPQLDNPERGFSFMQ 119

Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM  S  +SA+  VN+A   ++T +  + GEE+ A RIA AIV  R  AP  TT
Sbjct: 120 QGPLDMRMDRSQPMSAARFVNEAETDEMTSVFKLYGEERFAGRIAKAIVTARNIAPITTT 179

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ ++++     + ++ HPATR FQA+RI+VN E+ +L + L      L   G L+V+
Sbjct: 180 LQLAEIVKEANPKWEKHK-HPATRVFQAIRIYVNQELNDLERCLEQCIHVLAPKGRLVVI 238

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK------KVVVPTQEDVAF 302
           SFHSLEDR+VK+F  ++           P    P  ++ +        K ++P Q +++ 
Sbjct: 239 SFHSLEDRIVKQFMKNKEEGAK------PPPEVPIRYKELKTNFKRIGKAIMPQQNEISE 292

Query: 303 NRRSRSAKLRAG 314
           N R+RSA LR G
Sbjct: 293 NVRARSAVLRIG 304


>gi|56707815|ref|YP_169711.1| S-adenosyl-methyltransferase MraW [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670286|ref|YP_666843.1| S-adenosyl-methyltransferase [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224456886|ref|ZP_03665359.1| S-adenosyl-methyltransferase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254370311|ref|ZP_04986316.1| S-adenosyl-methyltransferase [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254874629|ref|ZP_05247339.1| S-adenosyl-methyltransferase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|68565439|sp|Q5NGY1|RSMH_FRATT RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|123169471|sp|Q14ID3|RSMH_FRAT1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|56604307|emb|CAG45328.1| S-adenosyl-methyltransferase [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110320619|emb|CAL08711.1| S-adenosyl-methyltransferase [Francisella tularensis subsp.
           tularensis FSC198]
 gi|151568554|gb|EDN34208.1| S-adenosyl-methyltransferase [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840628|gb|EET19064.1| S-adenosyl-methyltransferase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282158991|gb|ADA78382.1| S-adenosyl-methyltransferase [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 305

 Score =  188 bits (477), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 120/307 (39%), Positives = 180/307 (58%), Gaps = 22/307 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77
           H  VLL++ I  LN  P  + +DATFG GG+S++         +IA D+D  A+S  +E 
Sbjct: 2   HYSVLLQESINDLNINPQGIYIDATFGRGGHSKAILNRLTTGRLIAFDKDLDAISYAREN 61

Query: 78  MRDYKEQFSLFQ---ATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
                 QFS F+   A+F+ + DY         +DG++ DLGVSS Q+D   RGFSF  +
Sbjct: 62  F-----QFSNFEIVHASFASIYDYCLQHSLLGKIDGIIMDLGVSSPQLDNAARGFSFTHN 116

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTT 188
           GPLDMRM  S GI+AS  + + +V DL+ I  + GEE+ A +IA  I    +Q+   + T
Sbjct: 117 GPLDMRMDVSKGITASQALEELSVDDLSYIFKVYGEERFAKKIALRIKDYIQQNGSIRKT 176

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ LI  T+   K  + +PATR FQALRI+VNNE+++L   L +    +K+GG +  +
Sbjct: 177 LELAELILATI--GKKEKKNPATRCFQALRIYVNNELKDLEALLENILAVIKSGGRIAAI 234

Query: 249 SFHSLEDRLVKKFFASR---SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           SFHSLEDR+VK+ F++      ++  +  M+P ++     + ITKK     ++++  N R
Sbjct: 235 SFHSLEDRIVKQKFSALINPKQELNRITKMLPQDSSQIKLKWITKK-SKANEDELNQNVR 293

Query: 306 SRSAKLR 312
           SRSA LR
Sbjct: 294 SRSAILR 300


>gi|47097273|ref|ZP_00234832.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes str. 1/2a
           F6854]
 gi|254899261|ref|ZP_05259185.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes J0161]
 gi|254912599|ref|ZP_05262611.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Listeria
           monocytogenes J2818]
 gi|254936926|ref|ZP_05268623.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes F6900]
 gi|47014346|gb|EAL05320.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes str. 1/2a
           F6854]
 gi|258609526|gb|EEW22134.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes F6900]
 gi|293590591|gb|EFF98925.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Listeria
           monocytogenes J2818]
          Length = 312

 Score =  188 bits (477), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 107/303 (35%), Positives = 175/303 (57%), Gaps = 11/303 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VLL + + +L   P  + +DAT G  G+S           ++ A D+D  A+   + 
Sbjct: 4   HETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDNAKI 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + DY ++ +  +A F  +++ + ++G   VDG+++DLGVSS Q+D  +RGFS+ +   L
Sbjct: 64  KLADYSDKVTFIKANFRDMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQDAAL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     ++A  VVN+ + +DL RI    GEEK + +IA  I +RR+  P +TT +L 
Sbjct: 124 DMRMDQEQELTAKTVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTGELV 183

Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  +   ++    HP  R+FQA+RI VN+E+  +   L  A   +K GG + V++FH
Sbjct: 184 DIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLIKPGGRISVITFH 243

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+ K+ F  A++   +     +IP    P  F+  T+K +VP++E++  N R+RSA
Sbjct: 244 SLEDRITKQLFQEATKGPDLPPGLPVIPDEYKPD-FKLATRKPIVPSEEELEQNNRARSA 302

Query: 310 KLR 312
           KLR
Sbjct: 303 KLR 305


>gi|46908277|ref|YP_014666.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes serotype
           4b str. F2365]
 gi|254826203|ref|ZP_05231204.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL
           J1-194]
 gi|255520499|ref|ZP_05387736.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL
           J1-175]
 gi|51316263|sp|Q71XX2|RSMH_LISMF RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|46881548|gb|AAT04843.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes serotype
           4b str. F2365]
 gi|293595444|gb|EFG03205.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL
           J1-194]
          Length = 312

 Score =  187 bits (476), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 108/303 (35%), Positives = 175/303 (57%), Gaps = 11/303 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VLL + + +L   P  + +DAT G  G+S           ++ A D+D  A+   + 
Sbjct: 4   HETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDNAKI 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + DY ++ +  +A F  +++ + ++G   VDG+++DLGVSS Q+D  +RGFS+ +   L
Sbjct: 64  KLADYSDKVTFIKANFRDMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQDAAL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     ++A  VVN+ + +DL RI    GEEK + +IA  I +RR+  P +TT +L 
Sbjct: 124 DMRMDQEQELTAKIVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTGELV 183

Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  +   ++    HP  R+FQA+RI VN+E+  +   L  A   LK GG + V++FH
Sbjct: 184 DIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLLKPGGRISVITFH 243

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+ K+ F  A++   +     +IP    P  F+  T+K +VP++E++  N R+RSA
Sbjct: 244 SLEDRITKQLFQEATKGPDLPPGLPVIPDEYKPD-FKLATRKPIVPSEEELEQNNRARSA 302

Query: 310 KLR 312
           KLR
Sbjct: 303 KLR 305


>gi|148549600|ref|YP_001269702.1| S-adenosyl-methyltransferase MraW [Pseudomonas putida F1]
 gi|262825108|sp|A5W8Q8|RSMH_PSEP1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|148513658|gb|ABQ80518.1| S-adenosyl-methyltransferase MraW [Pseudomonas putida F1]
          Length = 315

 Score =  187 bits (476), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 122/307 (39%), Positives = 176/307 (57%), Gaps = 18/307 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMG--SNVIALDRDPFAVSCGQ 75
           +H+ VLL++ +  L        LD TFG GG+SR    K+G    ++  D+DP A++ GQ
Sbjct: 8   NHITVLLDEAVEALALRADGCYLDGTFGRGGHSRLILSKLGPQGRLLGFDKDPQAIATGQ 67

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
             +     +F + Q +F++L   V  +G    V GV+ DLGVSS Q+D  +RGFSF   G
Sbjct: 68  -ALAAEDGRFVIVQRSFAELGAEVAARGLHGKVSGVLLDLGVSSPQLDDPERGFSFLNDG 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+   GISA++ +  A V+++ R+    GEE+ A R+A A+V+RR+  PF  T D
Sbjct: 127 PLDMRMNPDQGISAAEFIATAPVEEIARVFKEYGEERFAGRMARAVVERREKQPFTRTAD 186

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ ++ K    +     +PATR+FQ LRI VNNE+ +L  GL +A  AL+ GG L V+SF
Sbjct: 187 LAEVL-KVANPAWEKGKNPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLAVISF 245

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITK---KVVVPTQEDVAFNRR 305
           HSLEDR+VK F       V      +P N      VF+   K   K    ++ ++  N R
Sbjct: 246 HSLEDRIVKLFMRK---LVKGEADNLPRNLPVQHKVFEPKIKLIGKAQFASEAELKANPR 302

Query: 306 SRSAKLR 312
           SRSA +R
Sbjct: 303 SRSAVMR 309


>gi|319649673|ref|ZP_08003829.1| S-adenosyl-methyltransferase MraW [Bacillus sp. 2_A_57_CT2]
 gi|317398835|gb|EFV79517.1| S-adenosyl-methyltransferase MraW [Bacillus sp. 2_A_57_CT2]
          Length = 310

 Score =  187 bits (476), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 112/304 (36%), Positives = 172/304 (56%), Gaps = 11/304 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
           +H  VLL++ +  LN  P  V +D T G  G+S       S    + A D+D  A++  +
Sbjct: 3   EHTTVLLKETVEGLNIHPDGVYVDCTLGGAGHSELILSQLSEKGKLYAFDQDDTAIAHAK 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E + +Y ++ ++ ++ F  LQ+ + + GV   DGV++DLGVSS Q+D  +RGFS+    P
Sbjct: 63  EKLAEYGDRITIIKSNFKYLQEELANLGVSKVDGVLYDLGVSSPQLDTPERGFSYHNDAP 122

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM     ISA DVVN+    +L +I    GEEK + +IA  I   R+ +P +TT  L
Sbjct: 123 LDMRMDTGADISAYDVVNRWEYGELVKIFFRYGEEKFSKQIARKIEAAREVSPIETTGQL 182

Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             LI++ +   ++    HPA R FQA+RI VN+E+      L  A   L   G + V++F
Sbjct: 183 VELIKEAIPAPARRKGGHPAKRVFQAIRIAVNDELGVFEDSLHQAIDILNPNGRISVITF 242

Query: 251 HSLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+ K  F  AS +  +     +IP    P + + I +K ++P++E++  N R+RS
Sbjct: 243 HSLEDRICKAAFKKASETPNLPPGLPIIPDEYKP-ILKLINRKPILPSEEELEHNNRARS 301

Query: 309 AKLR 312
           AKLR
Sbjct: 302 AKLR 305


>gi|256545404|ref|ZP_05472767.1| S-adenosyl-methyltransferase MraW [Anaerococcus vaginalis ATCC
           51170]
 gi|256398965|gb|EEU12579.1| S-adenosyl-methyltransferase MraW [Anaerococcus vaginalis ATCC
           51170]
          Length = 306

 Score =  187 bits (476), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 114/305 (37%), Positives = 166/305 (54%), Gaps = 12/305 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76
           H  VLL + I  LN     +  D T G GG+S+   K +  N  +I LD+D  A+   +E
Sbjct: 5   HKSVLLNETIENLNIKEDGIYADLTLGKGGHSKEILKKLSPNGLLIGLDQDKDAIKAARE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++D+      F   F  +++ + + G   +DG + D+GVSS QID GDRGFS+ K GPL
Sbjct: 65  NLKDFSNVL-YFNENFENIENVLDEAGFNRIDGALMDIGVSSYQIDNGDRGFSYMKDGPL 123

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+    ++A  +VN  ++ +L +I    GEE+ +  IA AIV  R+     TT  L 
Sbjct: 124 DMRMNKDNELTAKQIVNDYSLDELWKIFSEYGEERYSKTIAKAIVDYRKMHEINTTLQLR 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +++ K+V  S+    HP  R FQALRI VN E+E L   L      L   G L V++FHS
Sbjct: 184 NIVMKSVNTSE---AHPEKRVFQALRIEVNRELEVLENTLEKIVDRLNKNGRLCVITFHS 240

Query: 253 LEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK  F   S K +      +    H    + I+KK ++P+++++  N RS SAKL
Sbjct: 241 LEDRIVKNKFKEMSKKCICPPDFPVCVCNHEKKVKLISKKPILPSKDELKNNNRSHSAKL 300

Query: 312 RAGMR 316
           R   R
Sbjct: 301 RVCER 305


>gi|241257348|ref|XP_002404552.1| SAM dependent methyltransferase, putative [Ixodes scapularis]
 gi|215496661|gb|EEC06301.1| SAM dependent methyltransferase, putative [Ixodes scapularis]
          Length = 292

 Score =  187 bits (476), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 115/288 (39%), Positives = 172/288 (59%), Gaps = 13/288 (4%)

Query: 39  VILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95
           V +D TFG GG+SR   S     + +I +D+DP A++  QE +     + ++  + F  L
Sbjct: 8   VYVDCTFGRGGHSRLLLSHLSPQARLIVIDKDPQAIAVAQE-LAAQDSRVTVVHSGFGDL 66

Query: 96  QDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQA 151
              + +  V    GV+ DLG+SS QID  +RGFSF + GPLDMRM  SG ++A   + + 
Sbjct: 67  AQALDELEVGPLQGVMMDLGISSPQIDDAERGFSFMREGPLDMRMDTSGGLTAEQWLAEV 126

Query: 152 NVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPAT 211
           +V+ L  ++   GEE+ A +IA AIV RRQS P  TT+DL+ L+   V   +  + HPAT
Sbjct: 127 SVEVLKEVIAEYGEERFAFQIAKAIVDRRQSRPLHTTRDLAELVAGVVRTREKGQ-HPAT 185

Query: 212 RSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF--ASRSGKV 269
           R+FQA+RI++N E+EELA  L S    L   G L V++FHSLEDR+VK+F   A+R  + 
Sbjct: 186 RTFQAIRIYLNRELEELAYALPSILSRLATRGRLAVIAFHSLEDRMVKQFMNAAARPAQE 245

Query: 270 MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
            +   ++  +    + QS+ +  ++PT E+ + N R+RSA LR   RT
Sbjct: 246 QSRLPILEKDLPQPLVQSLGR--ILPTDEESSDNPRARSAVLRVVQRT 291


>gi|257483456|ref|ZP_05637497.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|289624974|ref|ZP_06457928.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|289647032|ref|ZP_06478375.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|298488527|ref|ZP_07006557.1| 16S rRNA m(4)C1402 methyltransferase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298156868|gb|EFH97958.1| 16S rRNA m(4)C1402 methyltransferase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|330868707|gb|EGH03416.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv.
           aesculi str. 0893_23]
 gi|330987126|gb|EGH85229.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331011570|gb|EGH91626.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 313

 Score =  187 bits (476), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 117/305 (38%), Positives = 177/305 (58%), Gaps = 16/305 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H+ VLLE+ +  L        LD TFG GG+SR    ++G +  ++  D+DP A++ GQ 
Sbjct: 7   HITVLLEEAVEALAVRADGCYLDGTFGRGGHSRLILSQLGPDGRLLGFDKDPQAIATGQ- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            +     +F + Q +F++L     ++G    V G++ DLGVSS Q+D  +RGFSF   GP
Sbjct: 66  ALAAEDGRFVIVQRSFAELGSEAQERGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDGP 125

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G+SA++ +  A  +++ R+    GEE+ A R+A+A+V RR+  PF+ T DL
Sbjct: 126 LDMRMDPTRGVSAAEFIATAPAEEIARVFKEYGEERFAKRMANAVVARREVQPFERTADL 185

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++ K    +     +PATR+FQ LRI VNNE+ +L  GL +A  AL+ GG L+V+SFH
Sbjct: 186 AEVL-KVANPAWEKGKNPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLVVISFH 244

Query: 252 SLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQ---SITKKVVVPTQEDVAFNRRSR 307
           SLEDR+VK F    + G+   +   +P    P  F+    I  K    +  +   N RSR
Sbjct: 245 SLEDRIVKLFMRKLAKGEADNMPRNLPIQFKP--FEPKIKIHGKAQFASDTETKANPRSR 302

Query: 308 SAKLR 312
           SA +R
Sbjct: 303 SAVMR 307


>gi|169827004|ref|YP_001697162.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Lysinibacillus sphaericus C3-41]
 gi|263456365|sp|B1HPY0|RSMH_LYSSC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|168991492|gb|ACA39032.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Lysinibacillus sphaericus C3-41]
          Length = 316

 Score =  187 bits (476), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 115/304 (37%), Positives = 174/304 (57%), Gaps = 11/304 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
           DH  VLL++ +  LN  P  V +D T G  G+S    +  S+   +I  D+D  A+   +
Sbjct: 3   DHTTVLLKETVDGLNIDPDGVYVDCTLGGAGHSEYLVQQLSDKGRLICFDQDMTAIENAK 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +  Y E+ +   + F  L++ +   G   VDG+++DLGVSS Q+D  +RGFS+    P
Sbjct: 63  IRLAPYIERVTFIHSNFRYLKEELLAHGFEQVDGILYDLGVSSPQLDTPERGFSYHHDAP 122

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM   + ++A +VVNQ   +DL RI    GEEK + ++A  I + R+SAP +TT  L
Sbjct: 123 LDMRMDQTATLTAFEVVNQWAYEDLVRIFFRYGEEKFSKQVARKIEEARKSAPIETTGQL 182

Query: 192 SSLIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             LI++ +  +   +  HPA R FQA+RI VN+E+      L  A   +  GG + V++F
Sbjct: 183 VELIKEGIPAAARRKGGHPAKRIFQAIRIAVNDELGAAEDSLVDAIDMINVGGRISVITF 242

Query: 251 HSLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           HSLEDRL K  F  AS   ++     +IP +  P + + IT+K +VP+ E++  N R+RS
Sbjct: 243 HSLEDRLCKTIFKEASSLPELPPNLPVIPDDMKPTL-KLITRKPIVPSDEELEVNNRARS 301

Query: 309 AKLR 312
           AKLR
Sbjct: 302 AKLR 305


>gi|67969111|dbj|BAE00910.1| unnamed protein product [Macaca fascicularis]
          Length = 450

 Score =  187 bits (476), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 111/295 (37%), Positives = 161/295 (54%), Gaps = 52/295 (17%)

Query: 20  HVPVLLEKVIALLNPAPGKV---------------------------------ILDATFG 46
           H+PV++++V+  L+P  G++                                  LD TFG
Sbjct: 72  HIPVMVDEVVHCLSPQKGQISFMCIVLFAYPNNLVMWTRMVHLHTRKLRLREIFLDMTFG 131

Query: 47  AGGYSRSFCKMGSNVI--ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV 104
           +GG++++  +  S+++  ALDRDP A +  +     Y ++       FSQ +  +   GV
Sbjct: 132 SGGHTKAILQKESDIVLYALDRDPTAYALAEHLSELYPKKIRAVLGQFSQAEALLTKAGV 191

Query: 105 -----DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI----SASDVVNQANVKD 155
                DGV+ DLG SSMQ+D  +RGFS +K GPLDMRM         +A+DVVN  +   
Sbjct: 192 QPGTFDGVLMDLGCSSMQLDTPERGFSLRKDGPLDMRMDGGRYPDMPTAADVVNALDQPA 251

Query: 156 LTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ-----KTVYFSKN---NRI 207
           L  IL   GEEK A +IA AIV+ R   P   TQ L+S++        +Y  K+      
Sbjct: 252 LASILRTYGEEKHARKIASAIVQARSIYPITRTQQLASIVAGAFPPSAIYARKDLLQRST 311

Query: 208 HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF 262
           H AT++FQALRIFVNNE+ EL  GL++A+K L+ GG L+ +SFHSLEDR++K+F 
Sbjct: 312 HIATKTFQALRIFVNNELNELYTGLKTAQKFLRPGGRLVALSFHSLEDRIIKRFL 366


>gi|16804080|ref|NP_465565.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes EGD-e]
 gi|224498509|ref|ZP_03666858.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes Finland
           1988]
 gi|224501159|ref|ZP_03669466.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL
           R2-561]
 gi|254827071|ref|ZP_05231758.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL
           N3-165]
 gi|284802488|ref|YP_003414353.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes 08-5578]
 gi|284995630|ref|YP_003417398.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes 08-5923]
 gi|20138988|sp|Q8Y5L7|RSMH_LISMO RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|16411511|emb|CAD00119.1| lmo2041 [Listeria monocytogenes EGD-e]
 gi|258599454|gb|EEW12779.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL
           N3-165]
 gi|284058050|gb|ADB68991.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes 08-5578]
 gi|284061097|gb|ADB72036.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes 08-5923]
          Length = 312

 Score =  187 bits (476), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 107/303 (35%), Positives = 175/303 (57%), Gaps = 11/303 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VLL + + +L   P  + +DAT G  G+S           ++ A D+D  A+   + 
Sbjct: 4   HETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDNAKI 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + DY ++ +  +A F  +++ + ++G   VDG+++DLGVSS Q+D  +RGFS+ +   L
Sbjct: 64  KLADYSDKVTFIKANFRDMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQDAAL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     ++A  VVN+ + +DL RI    GEEK + +IA  I +RR+  P +TT +L 
Sbjct: 124 DMRMDQEQELTAKTVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTGELV 183

Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  +   ++    HP  R+FQA+RI VN+E+  +   L  A   +K GG + V++FH
Sbjct: 184 DIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLIKPGGRISVITFH 243

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+ K+ F  A++   +     +IP    P  F+  T+K +VP++E++  N R+RSA
Sbjct: 244 SLEDRITKQLFQEATKGPDLPPGLPVIPDEYKPD-FKLATRKPIVPSEEELEQNNRARSA 302

Query: 310 KLR 312
           KLR
Sbjct: 303 KLR 305


>gi|30263920|ref|NP_846297.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. Ames]
 gi|47529351|ref|YP_020700.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|52141570|ref|YP_085259.1| S-adenosyl-methyltransferase MraW [Bacillus cereus E33L]
 gi|65321245|ref|ZP_00394204.1| COG0275: Predicted S-adenosylmethionine-dependent methyltransferase
           involved in cell envelope biogenesis [Bacillus anthracis
           str. A2012]
 gi|118479138|ref|YP_896289.1| S-adenosyl-methyltransferase MraW [Bacillus thuringiensis str. Al
           Hakam]
 gi|165872265|ref|ZP_02216902.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0488]
 gi|167641107|ref|ZP_02399362.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0193]
 gi|170709248|ref|ZP_02899669.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0389]
 gi|177655554|ref|ZP_02936964.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0174]
 gi|190566055|ref|ZP_03018974.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis
           Tsiankovskii-I]
 gi|196035938|ref|ZP_03103340.1| S-adenosyl-methyltransferase MraW [Bacillus cereus W]
 gi|196038800|ref|ZP_03106108.1| S-adenosyl-methyltransferase MraW [Bacillus cereus NVH0597-99]
 gi|196045790|ref|ZP_03113019.1| S-adenosyl-methyltransferase MraW [Bacillus cereus 03BB108]
 gi|218905049|ref|YP_002452883.1| S-adenosyl-methyltransferase MraW [Bacillus cereus AH820]
 gi|225865900|ref|YP_002751278.1| S-adenosyl-methyltransferase MraW [Bacillus cereus 03BB102]
 gi|227813172|ref|YP_002813181.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. CDC 684]
 gi|228916556|ref|ZP_04080122.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228928967|ref|ZP_04091999.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228935234|ref|ZP_04098060.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228947638|ref|ZP_04109928.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|229123432|ref|ZP_04252636.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus 95/8201]
 gi|229186159|ref|ZP_04313328.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus BGSC 6E1]
 gi|229603937|ref|YP_002868154.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0248]
 gi|254721453|ref|ZP_05183242.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A1055]
 gi|254735959|ref|ZP_05193665.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. Western
           North America USA6153]
 gi|254754371|ref|ZP_05206406.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. Vollum]
 gi|254756738|ref|ZP_05208767.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str.
           Australia 94]
 gi|301055409|ref|YP_003793620.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis CI]
 gi|33301354|sp|Q81WC3|RSMH_BACAN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|77416580|sp|Q636A8|RSMH_BACCZ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446803|sp|C3P688|RSMH_BACAA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446820|sp|C3L6F3|RSMH_BACAC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446828|sp|A0RHT9|RSMH_BACAH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446838|sp|B7JK06|RSMH_BACC0 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446859|sp|C1EPT2|RSMH_BACC3 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|30258564|gb|AAP27783.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. Ames]
 gi|47504499|gb|AAT33175.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|51975039|gb|AAU16589.1| S-adenosyl-methyltransferase [Bacillus cereus E33L]
 gi|118418363|gb|ABK86782.1| S-adenosyl-methyltransferase [Bacillus thuringiensis str. Al Hakam]
 gi|164711941|gb|EDR17481.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0488]
 gi|167510887|gb|EDR86278.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0193]
 gi|170125855|gb|EDS94761.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0389]
 gi|172080083|gb|EDT65180.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0174]
 gi|190562974|gb|EDV16940.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis
           Tsiankovskii-I]
 gi|195991587|gb|EDX55553.1| S-adenosyl-methyltransferase MraW [Bacillus cereus W]
 gi|196023230|gb|EDX61908.1| S-adenosyl-methyltransferase MraW [Bacillus cereus 03BB108]
 gi|196030523|gb|EDX69122.1| S-adenosyl-methyltransferase MraW [Bacillus cereus NVH0597-99]
 gi|218537984|gb|ACK90382.1| S-adenosyl-methyltransferase MraW [Bacillus cereus AH820]
 gi|225790748|gb|ACO30965.1| S-adenosyl-methyltransferase MraW [Bacillus cereus 03BB102]
 gi|227005932|gb|ACP15675.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. CDC 684]
 gi|228597335|gb|EEK54986.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus BGSC 6E1]
 gi|228660208|gb|EEL15844.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus 95/8201]
 gi|228812158|gb|EEM58489.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228824399|gb|EEM70205.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228830774|gb|EEM76379.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228843135|gb|EEM88217.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|229268345|gb|ACQ49982.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0248]
 gi|300377578|gb|ADK06482.1| S-adenosyl-methyltransferase MraW [Bacillus cereus biovar anthracis
           str. CI]
          Length = 310

 Score =  187 bits (476), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 114/304 (37%), Positives = 174/304 (57%), Gaps = 11/304 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
           +HV VLL++ +  L+  P    +D T G GG+S         G  +IA D+D  A+   +
Sbjct: 3   NHVTVLLKETVDGLDIKPDGTYVDCTLGGGGHSSYLLSQLTEGGRLIAFDQDEIAIQNAK 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E    Y EQF   ++ F  L + + + G   VDG++FDLGVSS Q+D  +RGFS+    P
Sbjct: 63  EKFSSYGEQFITVKSNFRYLSEKLQELGITEVDGILFDLGVSSPQLDTPERGFSYHHDAP 122

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM     ++A DVVN  + + L RI    GEEK + +IA  I   R++   +TT +L
Sbjct: 123 LDMRMDQDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTGEL 182

Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             LI++ +   ++    HPA R FQA+RI VN+E++   + L SA + +K GG + V++F
Sbjct: 183 VELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRVSVITF 242

Query: 251 HSLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+ K  F   S + ++     +IP    P + + IT+K ++P+  ++  N R+RS
Sbjct: 243 HSLEDRICKTTFKRNSTTPQLPPGLPIIPDEFKPKL-KLITRKPILPSDIELEENNRARS 301

Query: 309 AKLR 312
           AKLR
Sbjct: 302 AKLR 305


>gi|108563117|ref|YP_627433.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori HPAG1]
 gi|122980507|sp|Q1CTG3|RSMH_HELPH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|107836890|gb|ABF84759.1| hypothetical protein HPAG1_0692 [Helicobacter pylori HPAG1]
          Length = 308

 Score =  187 bits (476), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 120/304 (39%), Positives = 179/304 (58%), Gaps = 20/304 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVSCGQET 77
           H  VLL++V+    P    V++D T G GG+S++    K    +I +D+D FA    +E 
Sbjct: 8   HQSVLLQEVLQAFTPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFAQEIAKER 67

Query: 78  MRDYKEQFSLFQATFSQ-----LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           ++ ++ +++L    F++     L+ +  +K + GV+ DLGVSS+Q+D  +RGF+F  S  
Sbjct: 68  LKAFEGRYNLLSGGFAKRFKEALETH--NKEIKGVLVDLGVSSLQLDDDNRGFNFH-SHT 124

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM   S ++A  V+N   V  L +I    GE K+  +IAH I +RR   PF+  +DL
Sbjct: 125 LDMRMDLKSDLNAQKVINSYPVVALEKIFRDYGEIKEYKKIAHKIAERRAKKPFKDAKDL 184

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           S  +      SKN +IHPAT  FQA+RI VN+E+EEL + L+ A + LK G +L V+SFH
Sbjct: 185 SDFLSS---LSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCA-RNLK-GAILCVISFH 239

Query: 252 SLEDRLVKKFFASRSGKVM---AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SLED LVK  F   +   +   +      SN H A+   +TKK + P+ E++  NRRSRS
Sbjct: 240 SLEDALVKNAFKDYAKNCICDPSSFQCTCSNNH-ALGAILTKKPITPSPEEIKNNRRSRS 298

Query: 309 AKLR 312
           AK+R
Sbjct: 299 AKMR 302


>gi|308182803|ref|YP_003926930.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori PeCan4]
 gi|308064988|gb|ADO06880.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori PeCan4]
          Length = 308

 Score =  187 bits (476), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 119/304 (39%), Positives = 178/304 (58%), Gaps = 20/304 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVSCGQET 77
           H  VLL++V+    P    V++D T G GG+S++    K    +I +D+D FA    +E 
Sbjct: 8   HQSVLLQEVLQAFAPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFAQEIAKER 67

Query: 78  MRDYKEQFSLFQATFSQ-----LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           ++ ++ +++L    F++     L+ +  DK + GV+ DLGVSS+Q+D  +RGF+F  S  
Sbjct: 68  LKAFEGRYNLLSGGFAKRFKEALETH--DKEIKGVLVDLGVSSLQLDDDNRGFNFH-SHA 124

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM   G ++A  V+N   +  L +I    GE ++  +IAH I +RR   PF+  +DL
Sbjct: 125 LDMRMDLEGDLNAQKVINSYPIVALEKIFKDYGEIREYKKIAHKIAERRAKKPFKDAKDL 184

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           S  +      SKN +IHPAT  FQA+RI VN+E+EEL + L+ A + LK G +L V+SFH
Sbjct: 185 SDFLSS---LSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCA-RNLK-GAILCVISFH 239

Query: 252 SLEDRLVKKFFASRSGKVMA---VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SLED LVK  F   +   +          SN H A+   +TKK + P+ E++  NRRSRS
Sbjct: 240 SLEDALVKNSFKDYAKNCVCDPLSFKCTCSNNH-ALGAILTKKPITPSPEEIKNNRRSRS 298

Query: 309 AKLR 312
           AK+R
Sbjct: 299 AKMR 302


>gi|52080116|ref|YP_078907.1| S-adenosyl-methyltransferase MraW [Bacillus licheniformis ATCC
           14580]
 gi|52785490|ref|YP_091319.1| S-adenosyl-methyltransferase MraW [Bacillus licheniformis ATCC
           14580]
 gi|319646109|ref|ZP_08000339.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           sp. BT1B_CT2]
 gi|59799852|sp|Q65JY8|RSMH_BACLD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|52003327|gb|AAU23269.1| putative methyltransferase [Bacillus licheniformis ATCC 14580]
 gi|52347992|gb|AAU40626.1| YlxA [Bacillus licheniformis ATCC 14580]
 gi|317391859|gb|EFV72656.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           sp. BT1B_CT2]
          Length = 312

 Score =  187 bits (476), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 114/311 (36%), Positives = 174/311 (55%), Gaps = 11/311 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
           +H  VLL++ +  LN       +D T G  G+S       S    ++A D+D  A+   +
Sbjct: 3   EHTTVLLKETVDGLNVKEDGTYVDCTLGGAGHSEYLLSQLSEKGKLVAFDQDETALRHAK 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E + DY+ Q    ++ F  L+D + + G   VDGV+FDLGVSS Q+D  +RGFS+    P
Sbjct: 63  EKLADYEGQVVFIKSNFRYLKDRLNEIGITKVDGVLFDLGVSSPQLDTPERGFSYHHDAP 122

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G+SA +VVN+   +DL +I    GEEK + +IA  I K R+ +P +TT  L
Sbjct: 123 LDMRMDQSAGLSAKEVVNEWPYEDLVKIFFKYGEEKFSKQIARKIEKAREQSPIETTGQL 182

Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I++ +   ++ +  HPA R FQA+RI VN+E+    + L  A + LK GG + V++F
Sbjct: 183 VDIIKEAIPAPARRSGGHPAKRIFQAIRIAVNDELRVFEEALLQAIEVLKPGGRVSVITF 242

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+ K  F   S        +  IP    P + + + +K +  ++E++  N R+RS
Sbjct: 243 HSLEDRICKSTFKDMSSPPELPHGLPVIPKEFEPKL-KLVNRKPITASEEELEHNNRARS 301

Query: 309 AKLRAGMRTVE 319
           AKLR   +  E
Sbjct: 302 AKLRIAEKARE 312


>gi|330973397|gb|EGH73463.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 313

 Score =  187 bits (476), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 117/305 (38%), Positives = 176/305 (57%), Gaps = 16/305 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H+ VLLE+ +  L        LD TFG GG+SR    ++G +  ++  D+DP A++ GQ 
Sbjct: 7   HITVLLEEAVEALAVRADGCYLDGTFGRGGHSRLILSQLGPDGRLLGFDKDPQAIATGQ- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            +     +F + Q +F++L     ++G    V G++ DLGVSS Q+D  +RGFSF   GP
Sbjct: 66  ALAAEDGRFVIVQRSFAELGSETQERGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDGP 125

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM    G+SA++ +  A  +++ R+    GEE+ A R+A+A+V RR+  PF+ T DL
Sbjct: 126 LDMRMDPARGVSAAEFIATAPAEEIARVFKEYGEERFAKRMANAVVARREVQPFERTADL 185

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++ K    +     +PATR+FQ LRI VNNE+ +L  GL +A  AL+ GG L+V+SFH
Sbjct: 186 AEVL-KVANPAWEKGKNPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLVVISFH 244

Query: 252 SLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQ---SITKKVVVPTQEDVAFNRRSR 307
           SLEDR+VK F    + G+   +   +P    P  F+    I  K    +  +   N RSR
Sbjct: 245 SLEDRIVKLFMRKLAKGEADNMPRNLPIQFKP--FEPKIKIHGKAQFASDAETKANPRSR 302

Query: 308 SAKLR 312
           SA +R
Sbjct: 303 SAVMR 307


>gi|126665254|ref|ZP_01736237.1| S-adenosyl-methyltransferase MraW [Marinobacter sp. ELB17]
 gi|126630624|gb|EBA01239.1| S-adenosyl-methyltransferase MraW [Marinobacter sp. ELB17]
          Length = 325

 Score =  187 bits (476), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 124/311 (39%), Positives = 180/311 (57%), Gaps = 19/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQE 76
           H  VLL+  + LL    G   +DATFG GG+SR    ++  N  ++ +D+DP A+   + 
Sbjct: 15  HRSVLLDSAVDLLLTDSGGRYVDATFGRGGHSRMILERLAENGALLGIDKDPQAIDEAR- 73

Query: 77  TMRDYKEQFSLFQATFSQL-----QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           T+     +F+ F  +F+ L     Q + P   V+GV+ DLGVSS Q+D   RGFSF + G
Sbjct: 74  TLAAADSRFNAFHGSFADLGQALEQAHWPQ--VEGVLMDLGVSSPQLDDASRGFSFMRQG 131

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+     SA++ +  A+ K +  ++   GEE+ + RIA  IV+RR  AP  TT +
Sbjct: 132 PLDMRMNPQQAPSAAEWLASADEKVIADVIFKYGEERFSRRIARLIVERRAEAPITTTLE 191

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ L  K V   K    HPATR+FQA+RIF+N E+E+L  GL++A + L  GG L+V+SF
Sbjct: 192 LAELAAKAVP-KKEKHKHPATRTFQAIRIFINRELEDLELGLKAAAEKLAPGGRLVVISF 250

Query: 251 HSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDRLVK+F    + G  M     + +    + ++ I K     + E V+ N R+RSA
Sbjct: 251 HSLEDRLVKRFMRDLARGPQMPKGIPVTAAEESSAYRLIGKPSKAASDE-VSDNVRARSA 309

Query: 310 KLRAGMRTVER 320
                MR +ER
Sbjct: 310 V----MRVLER 316


>gi|253681660|ref|ZP_04862457.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum D str.
           1873]
 gi|253561372|gb|EES90824.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum D str.
           1873]
          Length = 309

 Score =  187 bits (476), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 110/305 (36%), Positives = 174/305 (57%), Gaps = 7/305 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
           +HVPVLLE+ I  LN     + +D T G  G+S    K  S    +I +D+D  A+   +
Sbjct: 4   NHVPVLLEETIDSLNIKEDGIYVDCTLGGAGHSSYILKRLSKKGKLIGIDQDINALKAAK 63

Query: 76  ETMRDYKEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           E +++Y     +    +  + + D +  + VDG++ DLGVSS Q+D  +RGFS+ +   L
Sbjct: 64  EKLKNYDNVIYVHNNFYNLASVLDELNIEKVDGILMDLGVSSYQLDTAERGFSYMQDAVL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+    +SA ++VN+ + ++L RI+   GEE+ A +IA AIVK+R+  P +TT +L 
Sbjct: 124 DMRMNTEESVSAYNIVNEYSEEELFRIIKEYGEERFARKIAKAIVKQREIEPVKTTLELV 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I+K +        HPA ++FQA+RI VN+E+E L + +    K L + G + +++FHS
Sbjct: 184 KIIKKVIPMKFQQGGHPAKKTFQAIRIEVNHELEILNKTIEDGVKHLNSHGRISIITFHS 243

Query: 253 LEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK  F          +   I       V + IT+K + P+QE+   N RS+S+KL
Sbjct: 244 LEDRIVKNKFKELENPCTCPKEFPICICGMKPVVKVITRKPLEPSQEEKENNSRSKSSKL 303

Query: 312 RAGMR 316
           R   R
Sbjct: 304 RVAQR 308


>gi|315283083|ref|ZP_07871351.1| S-adenosyl-methyltransferase MraW [Listeria marthii FSL S4-120]
 gi|313613270|gb|EFR87146.1| S-adenosyl-methyltransferase MraW [Listeria marthii FSL S4-120]
          Length = 312

 Score =  187 bits (476), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 106/303 (34%), Positives = 175/303 (57%), Gaps = 11/303 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VLL + + +L   P  + +DAT G  G+S           ++ A D+D  A+   + 
Sbjct: 4   HETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDNAEI 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + DY ++ +  +A F  +++ + ++G   VDG+++DLGVSS Q+D  +RGFS+ +   L
Sbjct: 64  KLADYSDKVTFIKANFRDMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQDAAL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     ++A  +VN+ + +DL RI    GEEK + +IA  I +RR+  P +TT +L 
Sbjct: 124 DMRMDQEQELTAKTIVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTGELV 183

Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  +   ++    HP  R+FQA+RI VN+E+  +   L  A   +K GG + V++FH
Sbjct: 184 DIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLIKPGGRISVITFH 243

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+ K+ F  A++   +     +IP    P  F+  T+K +VP++E++  N R+RSA
Sbjct: 244 SLEDRITKQLFQEATKGPDLPPGLPVIPDEYKPD-FKLATRKPIVPSEEELEQNNRARSA 302

Query: 310 KLR 312
           KLR
Sbjct: 303 KLR 305


>gi|218437172|ref|YP_002375501.1| S-adenosyl-methyltransferase MraW [Cyanothece sp. PCC 7424]
 gi|263447401|sp|B7K9F0|RSMH_CYAP7 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|218169900|gb|ACK68633.1| S-adenosyl-methyltransferase MraW [Cyanothece sp. PCC 7424]
          Length = 299

 Score =  187 bits (476), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 117/303 (38%), Positives = 174/303 (57%), Gaps = 29/303 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           H+PVL +++I  L+  PG   LDAT G GG+SR   +   +V   A+DRD  A++     
Sbjct: 17  HIPVLTQELIKGLDICPGGHYLDATVGGGGHSRQILETYGDVQVTAIDRDEVAIAAATTN 76

Query: 78  MRDYK-EQFSLFQATFSQLQDYVP-DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           + DY  ++ + +   F+   DY P +   DG++ DLGVSS Q+D  +RGFSF+   PLDM
Sbjct: 77  LADYNTDRLTFWTGNFA---DYDPGNLKFDGIIADLGVSSPQLDSPERGFSFRLDAPLDM 133

Query: 136 RMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM      +A+D++N  +  +L  +    GEE+ + +IA  IVK+R   PF +T +L+ +
Sbjct: 134 RMDRRQSTTAADIINSYSEIELANLFYNYGEERLSRQIAKQIVKQR---PFFSTTELAEV 190

Query: 195 IQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           I ++V    +  RIHPATR FQ LRI VN E++ L   L  +   LK  G++ ++SFHSL
Sbjct: 191 ISRSVPPKYRYGRIHPATRVFQGLRIAVNQELDSLESFLAKSPSWLKTNGIIGIISFHSL 250

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           EDR+VK              H +   A P + + +TKK ++P  ++ A N RSRSAKLR 
Sbjct: 251 EDRIVK--------------HQL--RASP-LLKVLTKKPIIPQSDEQAKNPRSRSAKLRL 293

Query: 314 GMR 316
             R
Sbjct: 294 AQR 296


>gi|47093593|ref|ZP_00231351.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes str. 4b
           H7858]
 gi|47018017|gb|EAL08792.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes str. 4b
           H7858]
 gi|328466075|gb|EGF37248.1| 16S rRNA m(4)C1402 methyltranserfase [Listeria monocytogenes 1816]
          Length = 312

 Score =  187 bits (476), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 108/303 (35%), Positives = 175/303 (57%), Gaps = 11/303 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VLL + + +L   P  + +DAT G  G+S           ++ A D+D  A++  + 
Sbjct: 4   HETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAINNAKI 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + DY ++ +  +A F  +++ + ++G   VDG+++DLGVSS Q+D  +RGFS+ +   L
Sbjct: 64  KLADYSDKVTFIKANFRDMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQDAAL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     ++A  VVN+ + +DL RI    GEEK + +IA  I +RR+  P +TT +L 
Sbjct: 124 DMRMDQEQELTAKIVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTGELV 183

Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  +   ++    HP  R+FQA+RI VN+E+  +   L  A   LK GG + V++FH
Sbjct: 184 DIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLLKPGGRISVITFH 243

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+ K  F  A++   +     +IP    P  F+  T+K +VP++E++  N R+RSA
Sbjct: 244 SLEDRITKHLFQEATKGPDLPPGLPVIPDEYKPD-FKLATRKPIVPSEEELEQNNRARSA 302

Query: 310 KLR 312
           KLR
Sbjct: 303 KLR 305


>gi|300788105|ref|YP_003768396.1| S-adenosyl-methyltransferase [Amycolatopsis mediterranei U32]
 gi|299797619|gb|ADJ47994.1| S-adenosyl-methyltransferase [Amycolatopsis mediterranei U32]
          Length = 317

 Score =  187 bits (476), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 120/320 (37%), Positives = 180/320 (56%), Gaps = 22/320 (6%)

Query: 16  TIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYS----RSFCKMGSNVIALDRDP 68
           T  +HVPVLL +++ L  P       V++DAT G GG+S     +F ++   ++ALDRDP
Sbjct: 2   TAPEHVPVLLSRIVELFTPVFTDRDGVLVDATVGLGGHSDALLEAFPRL--RLVALDRDP 59

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGF 125
            A+    E +  + ++       +  L + +   G+   DG++FDLGVSSMQ+D  +RGF
Sbjct: 60  AALEKSAERLARHGDRVDFVHTVYDGLPEALESVGLEKADGILFDLGVSSMQLDRAERGF 119

Query: 126 SFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           ++ K  PLDMRM   +G +A+DV+N     +L RIL   GEE+ A RI  A+V  R+  P
Sbjct: 120 AYSKDSPLDMRMDPTTGFTAADVLNTYAPGELIRILRDYGEERFAQRIVKAVVAAREKEP 179

Query: 185 FQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
           F T+  L  L+   V   ++    HPA R+FQALRI VN E+E L + + +A  AL  GG
Sbjct: 180 FTTSGRLVELLYDAVPAATRRTGGHPAKRTFQALRIEVNGELEVLRRAMPAALGALPVGG 239

Query: 244 LLIVVSFHSLEDRLVKKFFA----SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
            ++V S+ SLEDRLVK+  A    SR+ + + V   +P   H    + +T+      +E+
Sbjct: 240 RIVVESYQSLEDRLVKQALAELAKSRTPEGLPVE--LP--GHGPELKLLTRGAEKAGEEE 295

Query: 300 VAFNRRSRSAKLRAGMRTVE 319
           +  N R+ S +LRA  R  E
Sbjct: 296 IERNPRAASVRLRAAERIGE 315


>gi|153854700|ref|ZP_01995950.1| hypothetical protein DORLON_01948 [Dorea longicatena DSM 13814]
 gi|149752804|gb|EDM62735.1| hypothetical protein DORLON_01948 [Dorea longicatena DSM 13814]
          Length = 311

 Score =  187 bits (475), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 108/306 (35%), Positives = 176/306 (57%), Gaps = 15/306 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGS--NVIALDRDPFAVSCGQ 75
           +H  VLL + I  LN  P  + +D T G GG++   C+ +G   ++I +D+D  A+    
Sbjct: 4   EHKSVLLNETIEGLNIKPDGIYVDGTLGGGGHAYEVCRRLGEKGSIIGIDQDEAAIEAAS 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             ++D+ E+ ++ ++ +  ++  + + G   VDG+V DLGVSS Q+D  +RGFS+++  P
Sbjct: 64  VRLKDFGEKVTIIRSNYCDMKSKLHELGIDKVDGIVLDLGVSSYQLDTAERGFSYREDAP 123

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM     ++A D+VN  +  DL R++   GE+K A  IA  IV  R + P +TT  L
Sbjct: 124 LDMRMDRRQKMTARDIVNDYSEMDLYRVIRDYGEDKFAKNIAKHIVAARGTNPIETTGQL 183

Query: 192 SSLIQKTV---YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           + +I+ ++   Y  K+   HPA R+FQA+RI +N E++ L   L    + L  GG L ++
Sbjct: 184 TEIIRASIPMKYQKKSG--HPAKRTFQAIRIELNRELDVLKNSLDDMIEILNPGGRLCII 241

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS--ITKKVVVPTQEDVAFNRRS 306
           +FHSLEDR+VK  F              P      V +   +T+K ++P++E++ +N RS
Sbjct: 242 TFHSLEDRIVKSAFKKNENPCTCPPDF-PVCVCGKVSKGCVVTRKPILPSEEELEYNSRS 300

Query: 307 RSAKLR 312
           +SAKLR
Sbjct: 301 KSAKLR 306


>gi|152976280|ref|YP_001375797.1| S-adenosyl-methyltransferase MraW [Bacillus cereus subsp. cytotoxis
           NVH 391-98]
 gi|263446007|sp|A7GRP4|RSMH_BACCN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|152025032|gb|ABS22802.1| S-adenosyl-methyltransferase MraW [Bacillus cytotoxicus NVH 391-98]
          Length = 310

 Score =  187 bits (475), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 113/303 (37%), Positives = 172/303 (56%), Gaps = 11/303 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HV VLLE+ +  L+  P    +D T G GG+S         G  +IA D+D  A+   ++
Sbjct: 4   HVTVLLEETVDGLDIKPNGTYVDCTLGGGGHSSYLLSQLTEGGKLIAFDQDEIAIQNAKD 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
               Y EQF   ++ F  L + + + G   VDG++FDLGVSS Q+D  +RGFS+    PL
Sbjct: 64  KFSSYGEQFIAVKSNFRYLSEKLHELGITEVDGILFDLGVSSPQLDTPERGFSYHHDAPL 123

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     ++A DVVN  + + L RI    GEEK + +IA  I   R+    +TT +L 
Sbjct: 124 DMRMDQEAPLTAYDVVNNWSYEQLVRIFFQYGEEKFSKQIARKIEAYREKKKIETTGELV 183

Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            LI++ +   ++    HPA R FQA+RI VN+E++   + L +A + +K GG + V++FH
Sbjct: 184 ELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALEAAIEIVKPGGRISVITFH 243

Query: 252 SLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+ K  F   S + ++     +IP    P + + IT+K ++P+  ++  N R+RSA
Sbjct: 244 SLEDRICKTTFKRNSTTPELPPGLPIIPEEFKPKL-KLITRKPILPSDVELEENNRARSA 302

Query: 310 KLR 312
           KLR
Sbjct: 303 KLR 305


>gi|33519608|ref|NP_878440.1| S-adenosyl-methyltransferase MraW [Candidatus Blochmannia
           floridanus]
 gi|42559456|sp|Q7VQJ5|RSMH_BLOFL RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|33517271|emb|CAD83655.1| S-adenosyl methionine adenyltransferase; probably methyltransferase
           [Candidatus Blochmannia floridanus]
          Length = 321

 Score =  187 bits (475), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 122/320 (38%), Positives = 178/320 (55%), Gaps = 21/320 (6%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSC 73
           I  H  VLL + I  LN  P  + +D TFG GG+S     K+ S+  +IA+DRD  AV+ 
Sbjct: 3   IMHHNSVLLHEAINALNINPSGIYIDGTFGLGGHSHYILSKLTSHGRLIAMDRDWSAVNI 62

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQK 129
           G E +     +FS+  A FS++   + +      ++G++ DLGV   Q+    RGFSF +
Sbjct: 63  G-EVLTKQDGRFSIIHAPFSKMLRCIYNMNLVGLINGILLDLGVCESQLTDSSRGFSFMR 121

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM  S G SA + + +A+ KD+  +L   GEEK + +IA +IV +R+  P   T
Sbjct: 122 DGPLDMRMDNSVGQSAYEWIAKASQKDIEWVLRTFGEEKLSKKIARSIVLKREVYPIDRT 181

Query: 189 QDLSSLIQKTVYFSKNN---RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
             LS +I  TV +  N    R HPATRSF A+RI++N E+ E+ + L+   K L  GG L
Sbjct: 182 SALSEIISDTVLYYNNRYNRRKHPATRSFLAIRIYINEELVEIMKILQDVFKLLAPGGRL 241

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV-------VVPTQE 298
           +V+SF+SLEDR+VKKF    S +V A    IP   H  +    +  +       + PT  
Sbjct: 242 VVISFNSLEDRIVKKFINQYS-RVFAYPPKIPL-THTQLLHKYSGTMKFKNLGKIKPTVL 299

Query: 299 DVAFNRRSRSAKLRAGMRTV 318
           ++  N R+RSA LR   + +
Sbjct: 300 EIKKNIRARSAILRYAEKLI 319


>gi|118444716|ref|YP_878007.1| S-adenosyl-methyltransferase MraW [Clostridium novyi NT]
 gi|263446115|sp|A0Q055|RSMH_CLONN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|118135172|gb|ABK62216.1| S-adenosyl-methyltransferase MraW [Clostridium novyi NT]
          Length = 309

 Score =  187 bits (475), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 114/306 (37%), Positives = 166/306 (54%), Gaps = 9/306 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
           +HVPVLLE+ I  LN     + +D T G  G+S    K  S    +I +D+D  A+   +
Sbjct: 4   NHVPVLLEETIDSLNIKEDGIYVDCTLGGAGHSSEILKKLSKKGRLIGIDQDINAIKAAK 63

Query: 76  ETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E ++DY E  +     F  L    D +    VDG++ DLGVSS Q+D  +RGFS+ K   
Sbjct: 64  ERLKDY-ENVTYVHNNFYNLASILDELNVDKVDGILMDLGVSSYQLDTPERGFSYMKDAM 122

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+  +GISA DVVN  +  DL RI+   GEE+ + +IA AIVK R   P +TT +L
Sbjct: 123 LDMRMNTENGISAYDVVNGYSEDDLFRIIKDYGEERFSRKIAKAIVKERNEKPVETTLEL 182

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             +I+  +        HPA ++FQA+RI VN+E+E L + +      L   G + V++FH
Sbjct: 183 VKIIKDVIPMKFQQGGHPAKKTFQAIRIEVNHELEILNKTVEDGVNYLNPNGRISVITFH 242

Query: 252 SLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR++K  F          +   I       V + +T+K + P + +   N RSRS+K
Sbjct: 243 SLEDRIIKTKFKELENPCTCPKEFPICVCGKKPVVKVVTRKPIEPNEFERENNSRSRSSK 302

Query: 311 LRAGMR 316
           LR   +
Sbjct: 303 LRVAQK 308


>gi|152979594|ref|YP_001345223.1| S-adenosyl-methyltransferase MraW [Actinobacillus succinogenes
           130Z]
 gi|263446597|sp|A6VQP1|RSMH_ACTSZ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|150841317|gb|ABR75288.1| S-adenosyl-methyltransferase MraW [Actinobacillus succinogenes
           130Z]
          Length = 321

 Score =  187 bits (475), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 128/314 (40%), Positives = 179/314 (57%), Gaps = 28/314 (8%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQ 75
           +H  VLL + +  L      + +D TFG GG+SR    ++  N  +IA+DRDP A+    
Sbjct: 11  EHTTVLLHEAVQGLALKEQGIYIDGTFGRGGHSRLILSRLSPNGRLIAVDRDPLAI-VEA 69

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           E ++D +  F +   +FS + +     G    VDG++ DLGVSS Q+D   RGFSF K G
Sbjct: 70  EKIQDPR--FQIEHNSFSAIPEICAKYGLTGKVDGILLDLGVSSPQLDDAQRGFSFMKDG 127

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP------ 184
           PLDMRM  + G+SAS+ + Q + +DL  +L   GEE+ A RIA AIV   +SA       
Sbjct: 128 PLDMRMDTTKGLSASEWLAQVSERDLAWVLKTFGEERFAKRIAAAIVNYNKSAVEKNEEI 187

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
              T  L+ LI   V F K+   HPATR+FQA+RIF+N+E++EL   L+SA   L   G 
Sbjct: 188 LNRTLQLAELISSAVPF-KDKHKHPATRTFQAIRIFLNSELDELESVLQSALTVLAPQGR 246

Query: 245 LIVVSFHSLEDRLVKKFFASRS-----GKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQE 298
           L V+SFHSLEDR+VK F   +S      K + +R   I  N      ++I  K + P++ 
Sbjct: 247 LSVISFHSLEDRMVKHFMRKQSRGEDIPKGLPLREEQIQRN---RTLKTIG-KAIQPSER 302

Query: 299 DVAFNRRSRSAKLR 312
           ++A N RSRSA LR
Sbjct: 303 EIAVNPRSRSAVLR 316


>gi|289677689|ref|ZP_06498579.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv.
           syringae FF5]
          Length = 313

 Score =  187 bits (475), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 117/305 (38%), Positives = 176/305 (57%), Gaps = 16/305 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H+ VLLE+ +  L        LD TFG GG+SR    ++G +  ++  D+DP A++ GQ 
Sbjct: 7   HITVLLEEAVEALAVRADGCYLDGTFGRGGHSRLILSQLGPDGRLLGFDKDPQAIATGQ- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            +     +F + Q +F++L     ++G    V G++ DLGVSS Q+D  +RGFSF   GP
Sbjct: 66  ALAAEDGRFVIVQRSFAELGSETQERGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDGP 125

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM    G+SA++ +  A  +++ R+    GEE+ A R+A+A+V RR+  PF+ T DL
Sbjct: 126 LDMRMDPARGVSAAEFIATAPAEEIARVFKEYGEERFAKRMANAVVARREVQPFERTADL 185

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++ K    +     +PATR+FQ LRI VNNE+ +L  GL +A  AL+ GG L+V+SFH
Sbjct: 186 AEVL-KVANPAWEKGKNPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLVVISFH 244

Query: 252 SLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQ---SITKKVVVPTQEDVAFNRRSR 307
           SLEDR+VK F    + G+   +   +P    P  F+    I  K    +  +   N RSR
Sbjct: 245 SLEDRIVKLFMRKLAKGEADNMPRNLPIQYKP--FEPKIKIHGKAQFASDVETKANPRSR 302

Query: 308 SAKLR 312
           SA +R
Sbjct: 303 SAVMR 307


>gi|26988063|ref|NP_743488.1| S-adenosyl-methyltransferase MraW [Pseudomonas putida KT2440]
 gi|38258006|sp|Q88N84|RSMH_PSEPK RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|24982787|gb|AAN66952.1|AE016324_2 conserved hypothetical protein TIGR00006 [Pseudomonas putida
           KT2440]
          Length = 315

 Score =  187 bits (475), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 121/307 (39%), Positives = 176/307 (57%), Gaps = 18/307 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMG--SNVIALDRDPFAVSCGQ 75
           +H+ VLL++ +  L        LD TFG GG+SR    K+G    ++  D+DP A++ GQ
Sbjct: 8   NHITVLLDEAVEALALRADGCYLDGTFGRGGHSRLILSKLGPQGRLLGFDKDPQAIATGQ 67

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
             +     +F + Q +F++L   V  +G    V GV+ DLGVSS Q+D  +RGFSF   G
Sbjct: 68  -ALAAEDGRFVIVQRSFAELGAEVAARGLHGKVSGVLLDLGVSSPQLDDPERGFSFLNDG 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+   G+SA++ +  A V+++ R+    GEE+ A R+A A+V+RR+  PF  T D
Sbjct: 127 PLDMRMNPDQGVSAAEFIATAPVEEIARVFKEYGEERFAGRMARAVVERREKQPFTRTAD 186

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ ++ K    +     +PATR+FQ LRI VNNE+ +L  GL +A  AL+ GG L V+SF
Sbjct: 187 LAEVL-KVANPAWEKGKNPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLAVISF 245

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITK---KVVVPTQEDVAFNRR 305
           HSLEDR+VK F       V      +P N      VF+   K   K    ++ ++  N R
Sbjct: 246 HSLEDRIVKLFMRK---LVKGEADNLPRNLPVQHKVFEPKIKLIGKAQFASEAELKANPR 302

Query: 306 SRSAKLR 312
           SRSA +R
Sbjct: 303 SRSAVMR 309


>gi|226224647|ref|YP_002758754.1| hypothetical protein Lm4b_02062 [Listeria monocytogenes Clip81459]
 gi|254854022|ref|ZP_05243370.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL
           R2-503]
 gi|254933469|ref|ZP_05266828.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes HPB2262]
 gi|300765476|ref|ZP_07075457.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL
           N1-017]
 gi|263456339|sp|C1KWZ4|RSMH_LISMC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|225877109|emb|CAS05821.1| Hypothetical protein of unknown function [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|258607414|gb|EEW20022.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL
           R2-503]
 gi|293585031|gb|EFF97063.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes HPB2262]
 gi|300513787|gb|EFK40853.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL
           N1-017]
 gi|332312491|gb|EGJ25586.1| Ribosomal RNA small subunit methyltransferase H [Listeria
           monocytogenes str. Scott A]
          Length = 312

 Score =  187 bits (475), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 108/303 (35%), Positives = 174/303 (57%), Gaps = 11/303 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VLL + + +L   P  + +DAT G  G+S           ++ A D+D  A+   + 
Sbjct: 4   HETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDNAKI 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + DY ++ +  +A F  +++ + ++G   VDG+++DLGVSS Q+D  +RGFS+ +   L
Sbjct: 64  KLADYSDKVTFIKANFRDMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQDAAL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     ++A  VVN+ + +DL RI    GEEK + +IA  I +RR+  P +TT +L 
Sbjct: 124 DMRMDQEQELTAKIVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTGELV 183

Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  +   ++    HP  R+FQA+RI VN+E+  +   L  A   LK GG + V++FH
Sbjct: 184 DIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLLKPGGRISVITFH 243

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+ K  F  A++   +     +IP    P  F+  T+K +VP++E++  N R+RSA
Sbjct: 244 SLEDRITKHLFQEATKGPDLPPGLPVIPDEYKPD-FKLATRKPIVPSEEELEQNNRARSA 302

Query: 310 KLR 312
           KLR
Sbjct: 303 KLR 305


>gi|254819736|ref|ZP_05224737.1| S-adenosyl-methyltransferase MraW [Mycobacterium intracellulare
           ATCC 13950]
          Length = 321

 Score =  187 bits (475), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 114/314 (36%), Positives = 178/314 (56%), Gaps = 18/314 (5%)

Query: 21  VPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFA 70
           +PVLLE+ +ALL PA         G  ++DAT GAGG++  F     G  +I LDRDP A
Sbjct: 1   MPVLLERCVALLTPALTRHHPDGTGATLVDATVGAGGHAERFLTELPGLRLIGLDRDPTA 60

Query: 71  VSCGQETMRDYKEQFSLFQATFSQL------QDYVPDKGVDGVVFDLGVSSMQIDCGDRG 124
           +   +  +  + ++ +L +  +  +        Y   + VDG++FDLGVSSMQ+D  +RG
Sbjct: 61  LDITRTRLARFSDRVTLVRTRYDGVATALAESGYAATESVDGMLFDLGVSSMQLDRAERG 120

Query: 125 FSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           F++ +  PLDMRM     ++A+D++N  +  +L  IL   GEE+ A RIA  IV+RR   
Sbjct: 121 FAYAQDAPLDMRMDPDAPLTAADILNTYDETELANILHRYGEERFARRIAAHIVRRRARQ 180

Query: 184 PFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           PF +T DL +L+ + +   ++    HPA R+FQALR+ VN+E++ L   L +A  AL  G
Sbjct: 181 PFASTADLVALLYEAIPAAARRTGGHPAKRTFQALRVAVNDELDSLRAALPAALDALAVG 240

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G ++V+++ SLEDR+VK+ FA        V   +    H   F+++T+        ++  
Sbjct: 241 GRIVVMTYQSLEDRIVKRLFAEAVASRTPVDLPVELPGHQPRFRALTQGAGRADATEIER 300

Query: 303 NRRSRSAKLRAGMR 316
           N RS + +LRA  R
Sbjct: 301 NPRSAAVRLRALQR 314


>gi|42524595|ref|NP_969975.1| S-adenosyl-methyltransferase [Bdellovibrio bacteriovorus HD100]
 gi|110826013|sp|P62469|RSMH_BDEBA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|39576805|emb|CAE78034.1| S-adenosyl-methyltransferase [Bdellovibrio bacteriovorus HD100]
          Length = 328

 Score =  187 bits (475), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 123/317 (38%), Positives = 181/317 (57%), Gaps = 34/317 (10%)

Query: 19  DHVPVLLEKVIALLNPAPGKVIL---DATFGAGGY----SRSFCKMGSNVIALDRDPFAV 71
           +H PVLL++V+A   P   K  L   D TFG GG+      ++ +M + V  +D+D  A+
Sbjct: 32  EHYPVLLQEVLAAFYPLRDKKELSYFDGTFGRGGHYMALKYAYPQMKATV--MDQDLAAI 89

Query: 72  SCGQETMRDYKE--QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
           +  Q   +   E  Q ++    F+Q  ++  +   D ++ DLGVSS Q+D G+RGFSF  
Sbjct: 90  AFAQSRFQTEVEKGQLNVIHGNFTQFSEHNLN-NFDMMLLDLGVSSPQLDQGERGFSFYN 148

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM+   G++A  ++N A+  +L RI    GE  + SR+  AIV  R++  FQTT
Sbjct: 149 DGPLDMRMNQQQGLTAEVLINTASEDELIRIFKEYGEVYRPSRVVRAIVNDRKTKAFQTT 208

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ LI++   +      HPAT+ F ALR+ VN+E+E +A+ +    +AL  GG L V+
Sbjct: 209 GALAGLIERVDGWQVKGH-HPATKYFMALRLAVNSELEVVAEAIPKMIRALNPGGRLAVI 267

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDR+VK  F  R  + +               +++TKKV+VPTQE+   N RSRS
Sbjct: 268 SFHSLEDRIVKNIF--RESEDLG--------------RTVTKKVIVPTQEECDRNSRSRS 311

Query: 309 AKLRAGMRTVERSIEDD 325
           AKL    R  ERS +D+
Sbjct: 312 AKL----RIFERSAQDE 324


>gi|328472688|gb|EGF43546.1| 16S rRNA m(4)C1402 methyltranserfase [Listeria monocytogenes 220]
          Length = 315

 Score =  187 bits (475), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 108/303 (35%), Positives = 174/303 (57%), Gaps = 11/303 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VLL + + +L   P  + +DAT G  G+S           ++ A D+D  A+   + 
Sbjct: 4   HETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDNAKI 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + DY ++ +  +A F  +++ + ++G   VDG+++DLGVSS Q+D  +RGFS+ +   L
Sbjct: 64  KLADYSDKVTFIKANFRDMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQDAAL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     ++A  VVN+ + +DL RI    GEEK + +IA  I +RR+  P +TT +L 
Sbjct: 124 DMRMDQEQELTAKIVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTGELV 183

Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  +   ++    HP  R+FQA+RI VN+E+  +   L  A   LK GG + V++FH
Sbjct: 184 DIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLLKPGGRISVITFH 243

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+ K  F  A++   +     +IP    P  F+  T+K +VP++E++  N R+RSA
Sbjct: 244 SLEDRITKHLFQEATKGPDLPPGLPVIPDEYKPD-FKLATRKPIVPSEEELEQNNRARSA 302

Query: 310 KLR 312
           KLR
Sbjct: 303 KLR 305


>gi|30022007|ref|NP_833638.1| S-adenosyl-methyltransferase MraW [Bacillus cereus ATCC 14579]
 gi|75762006|ref|ZP_00741921.1| S-adenosyl-methyltransferase mraW [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|206971097|ref|ZP_03232048.1| S-adenosyl-methyltransferase MraW [Bacillus cereus AH1134]
 gi|218899072|ref|YP_002447483.1| S-adenosyl-methyltransferase MraW [Bacillus cereus G9842]
 gi|228902424|ref|ZP_04066578.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis IBL 4222]
 gi|228909744|ref|ZP_04073567.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis IBL 200]
 gi|228922671|ref|ZP_04085971.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228941007|ref|ZP_04103565.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228954195|ref|ZP_04116223.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|228960136|ref|ZP_04121800.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228966872|ref|ZP_04127916.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|228973938|ref|ZP_04134513.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228980527|ref|ZP_04140837.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis Bt407]
 gi|229047603|ref|ZP_04193193.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus AH676]
 gi|229071418|ref|ZP_04204640.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus F65185]
 gi|229081171|ref|ZP_04213681.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus Rock4-2]
 gi|229111388|ref|ZP_04240941.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus Rock1-15]
 gi|229129196|ref|ZP_04258169.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus BDRD-Cer4]
 gi|229146490|ref|ZP_04274861.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus BDRD-ST24]
 gi|229152116|ref|ZP_04280311.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus m1550]
 gi|229180194|ref|ZP_04307538.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus 172560W]
 gi|229192088|ref|ZP_04319057.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus ATCC 10876]
 gi|296504412|ref|YP_003666112.1| S-adenosyl-methyltransferase MraW [Bacillus thuringiensis BMB171]
 gi|33301351|sp|Q819P8|RSMH_BACCR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446850|sp|B7IVF3|RSMH_BACC2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|29897563|gb|AAP10839.1| S-adenosyl-methyltransferase mraW [Bacillus cereus ATCC 14579]
 gi|74490508|gb|EAO53809.1| S-adenosyl-methyltransferase mraW [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|206733869|gb|EDZ51040.1| S-adenosyl-methyltransferase MraW [Bacillus cereus AH1134]
 gi|218540802|gb|ACK93196.1| S-adenosyl-methyltransferase MraW [Bacillus cereus G9842]
 gi|228591414|gb|EEK49264.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus ATCC 10876]
 gi|228603403|gb|EEK60880.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus 172560W]
 gi|228631465|gb|EEK88099.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus m1550]
 gi|228637123|gb|EEK93582.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus BDRD-ST24]
 gi|228654433|gb|EEL10298.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus BDRD-Cer4]
 gi|228672164|gb|EEL27455.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus Rock1-15]
 gi|228702215|gb|EEL54691.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus Rock4-2]
 gi|228711709|gb|EEL63662.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus F65185]
 gi|228723850|gb|EEL75205.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus AH676]
 gi|228779347|gb|EEM27604.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis Bt407]
 gi|228785804|gb|EEM33808.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228792971|gb|EEM40529.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|228799652|gb|EEM46605.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228805515|gb|EEM52106.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|228818686|gb|EEM64753.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228837100|gb|EEM82441.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228850033|gb|EEM94864.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis IBL 200]
 gi|228857168|gb|EEN01674.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis IBL 4222]
 gi|296325464|gb|ADH08392.1| S-adenosyl-methyltransferase MraW [Bacillus thuringiensis BMB171]
 gi|326941688|gb|AEA17584.1| S-adenosyl-methyltransferase MraW [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 310

 Score =  187 bits (475), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 114/303 (37%), Positives = 173/303 (57%), Gaps = 11/303 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HV VLL++ +  L+  P    +D T G GG+S         G  +IA D+D  A+   +E
Sbjct: 4   HVTVLLKETVDGLDIKPDGTYVDCTLGGGGHSSYLLSQLTEGGKLIAFDQDEIAIQNAKE 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
               Y EQF   ++ F  L + + + G   VDG++FDLGVSS Q+D  +RGFS+    PL
Sbjct: 64  KFSSYGEQFITVKSNFRYLAEKLQEIGITEVDGILFDLGVSSPQLDTPERGFSYHHDAPL 123

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     ++A DVVN  + + L RI    GEEK + +IA  I   R++   +TT +L 
Sbjct: 124 DMRMDQDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTGELV 183

Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            LI++ +   ++    HPA R FQA+RI VN+E++   + L SA + +K GG + V++FH
Sbjct: 184 ELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRVSVITFH 243

Query: 252 SLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+ K  F   S + ++     +IP    P + + IT+K ++P+  ++  N R+RSA
Sbjct: 244 SLEDRICKTTFKRNSTTPQLPPGLPIIPDEFKPKL-KLITRKPILPSDIELEENNRARSA 302

Query: 310 KLR 312
           KLR
Sbjct: 303 KLR 305


>gi|229075675|ref|ZP_04208657.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus Rock4-18]
 gi|229098389|ref|ZP_04229334.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus Rock3-29]
 gi|228685006|gb|EEL38939.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus Rock3-29]
 gi|228707451|gb|EEL59642.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus Rock4-18]
          Length = 310

 Score =  187 bits (475), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 113/303 (37%), Positives = 173/303 (57%), Gaps = 11/303 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HV VLL++ +  L+  P    +D T G GG+S         G  +IA D+D  A+   +E
Sbjct: 4   HVTVLLKETVDGLDIKPDGTYVDCTLGGGGHSSYLLSQLTDGGKLIAFDQDEIAIQNAKE 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
               Y EQF   ++ F  L + + + G   VDG++FDLGVSS Q+D  +RGFS+    PL
Sbjct: 64  KFSSYGEQFITVKSNFRYLSEKLQELGITEVDGILFDLGVSSPQLDTPERGFSYHHDAPL 123

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     ++A DV+N  + + L RI    GEEK + +IA  I   R++   +TT +L 
Sbjct: 124 DMRMDQDAPLTAYDVINSWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTGELV 183

Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            LI++ +   ++    HPA R FQA+RI VN+E++   + L SA + +K GG + V++FH
Sbjct: 184 ELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRVSVITFH 243

Query: 252 SLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+ K  F   S + ++     +IP    P + + IT+K ++P+  ++  N R+RSA
Sbjct: 244 SLEDRICKTTFKRNSTTPQLPPGLPIIPDEFKPKL-KLITRKPILPSDIELEENNRARSA 302

Query: 310 KLR 312
           KLR
Sbjct: 303 KLR 305


>gi|239813918|ref|YP_002942828.1| S-adenosyl-methyltransferase MraW [Variovorax paradoxus S110]
 gi|263504487|sp|C5CNE6|RSMH_VARPS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|239800495|gb|ACS17562.1| S-adenosyl-methyltransferase MraW [Variovorax paradoxus S110]
          Length = 307

 Score =  187 bits (475), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 131/313 (41%), Positives = 177/313 (56%), Gaps = 16/313 (5%)

Query: 15  HTIGDHVPVLL-EKVIALLN--PAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDP 68
           +T   H  VLL E V ALL+   A     +DATFG GG++R+          +IA D+D 
Sbjct: 2   NTPWTHTTVLLNEAVEALLSGSTAATGTYVDATFGRGGHARAILARLAPEGRLIAFDKDA 61

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
            AV+   E  R    +FS+    F  L + +PD  V GV+ DLGVSS QID   RGFSF+
Sbjct: 62  EAVA---EAARISDARFSIRHQGFRSLGE-LPDASVAGVLMDLGVSSPQIDNPVRGFSFR 117

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQ 186
             GPLDMRM  + G S +D +  A ++ +  ++   GEE+ A +IA AIV RRQ      
Sbjct: 118 FDGPLDMRMDTTRGESVADWLATAELQQIAEVIRDYGEERFAVQIAKAIVARRQERGAIS 177

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           TT +L+ L+  TV   +  + +PATR+FQA RIF+N E+EEL Q L ++   L+ GG L 
Sbjct: 178 TTSELAELVAGTVKTREPGQ-NPATRTFQAFRIFINAELEELQQALEASLSVLQPGGRLA 236

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+SFHSLEDR+VK+F A  S +V   R      A P   +    + + P+  +V  N RS
Sbjct: 237 VISFHSLEDRIVKQFIARHSKEVYDRRAPF---AAPKAMKLRALERIKPSDAEVHGNPRS 293

Query: 307 RSAKLRAGMRTVE 319
           RSA LR   RT E
Sbjct: 294 RSAILRVAERTQE 306


>gi|291457557|ref|ZP_06596947.1| S-adenosyl-methyltransferase MraW [Bifidobacterium breve DSM 20213]
 gi|291380610|gb|EFE88128.1| S-adenosyl-methyltransferase MraW [Bifidobacterium breve DSM 20213]
          Length = 350

 Score =  187 bits (474), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 119/307 (38%), Positives = 173/307 (56%), Gaps = 15/307 (4%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74
           H PVLL+  + L+ PA    G V +D T G  G+S +F K    + +I +DRD  A++  
Sbjct: 8   HQPVLLDDCVNLVAPALQHEGAVAVDCTLGLAGHSTAFLKAAPQARLIGIDRDSEALALA 67

Query: 75  QETM--RDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQK 129
            E M      ++F+   A F QL   + D+GV   D V  DLG+SS+QID  DRGFS+  
Sbjct: 68  TERMVQEGLSDRFTPVHAAFDQLDQVLADQGVERVDAVFMDLGLSSLQIDETDRGFSYSH 127

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM  S  ++A  ++   ++  L R+    GEE+ A +IA  IV RR   PF TT
Sbjct: 128 DAPLDMRMDVSQNLTAERILADYDMASLIRVFREYGEERFARQIAREIVSRRTQTPFTTT 187

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L++L++  V  +     +PA R FQALRI VN E+++L+  L  A   L+ GG L+V 
Sbjct: 188 GQLNALVEDVVPKAHRPAGNPAKRVFQALRIEVNGELDKLSSILPQAANRLQVGGRLVVE 247

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           S+HSLED+ VK F A +  K+ A  ++  +P +A P  F+ +T+  +    E+   N RS
Sbjct: 248 SYHSLEDKTVKSFMA-QGLKIDAPANLPIVPDDAQP-FFRELTRGAIKADDEERQRNPRS 305

Query: 307 RSAKLRA 313
            S +LRA
Sbjct: 306 ASVRLRA 312


>gi|256003312|ref|ZP_05428303.1| S-adenosyl-methyltransferase MraW [Clostridium thermocellum DSM
           2360]
 gi|281417697|ref|ZP_06248717.1| S-adenosyl-methyltransferase MraW [Clostridium thermocellum JW20]
 gi|255992602|gb|EEU02693.1| S-adenosyl-methyltransferase MraW [Clostridium thermocellum DSM
           2360]
 gi|281409099|gb|EFB39357.1| S-adenosyl-methyltransferase MraW [Clostridium thermocellum JW20]
 gi|316940267|gb|ADU74301.1| S-adenosyl-methyltransferase MraW [Clostridium thermocellum DSM
           1313]
          Length = 313

 Score =  187 bits (474), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 113/304 (37%), Positives = 169/304 (55%), Gaps = 11/304 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H PVLLE+ I+ L   P  V +D T G  G+S    K       +I LD+D FA+   QE
Sbjct: 5   HKPVLLEETISNLAIKPDGVYIDGTVGGAGHSGEILKRLDESGTLIGLDQDEFAIKTSQE 64

Query: 77  TMR--DYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +   + K +  L    F  +++       + VDG++ DLGVSS Q+D   RGFS+ K  
Sbjct: 65  KLAQINSKAKIILVNTNFVNIKEVCQKNNIESVDGILLDLGVSSHQLDEASRGFSYNKDA 124

Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM   G ++A  +VN+   +++ RI+   GEEK ASRIA  IV+ R+    +TT +
Sbjct: 125 PLDMRMDRRGELTAKKIVNEYGREEIKRIIRDYGEEKWASRIAEFIVEARKKKEIETTGE 184

Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I+  +  S +    HPA R+FQALRI VNNE+  LA+ +    + LK GG   +++
Sbjct: 185 LVDIIKAAIPSSARRGGPHPAKRTFQALRIAVNNELGILAKTIEDGTELLKPGGRFCIIT 244

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK  F  +    +  +   + +         + +K +VP ++++  N R+RS
Sbjct: 245 FHSLEDRIVKDEFNKKVNPCICPKQFPVCTCGRKPEGVLVNRKPIVPKEKELEENPRARS 304

Query: 309 AKLR 312
           AKLR
Sbjct: 305 AKLR 308


>gi|241664315|ref|YP_002982675.1| S-adenosyl-methyltransferase MraW [Ralstonia pickettii 12D]
 gi|262825232|sp|C6BEJ1|RSMH_RALP1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|240866342|gb|ACS64003.1| S-adenosyl-methyltransferase MraW [Ralstonia pickettii 12D]
          Length = 319

 Score =  187 bits (474), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 119/313 (38%), Positives = 183/313 (58%), Gaps = 21/313 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VLL++ +  L      + +D TFG GG+SR   +    G  ++A D+DP A++    
Sbjct: 11  HQTVLLDEAVDALIWRDDGIYIDGTFGRGGHSRRILERLGPGGRLVAFDKDPAAITEAG- 69

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           T+ D +  F++   +F+Q+   +  +G++   GV+ DLG+SS QID G+RGFSF+  GPL
Sbjct: 70  TVEDAR--FAIEHDSFAQMAQCLDARGIERVAGVLLDLGISSPQIDEGERGFSFRMDGPL 127

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR----QSAPFQTT 188
           DMRM  + GI+A+  + +A+ +D+ R++   GEE+ A +IA AIV RR       P   T
Sbjct: 128 DMRMDTTRGITAAQWLAEADERDIARVIRDYGEERFAVQIAKAIVARRGQSGDRGPLDRT 187

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L++L+ + V   +  +  PATR+FQALRI VN E+ +L  GL++A   L+ GG L+V+
Sbjct: 188 SELAALVAQAVKTREKGQ-DPATRTFQALRIHVNQELADLETGLKAAFDRLEQGGRLVVI 246

Query: 249 SFHSLEDRLVKKF---FASRSGKVMAVRHMIPSNAH--PAVFQSITKKVVVPTQEDVAFN 303
           SFHSLEDR+VK+F    A             P  AH  PA    +  + V P++ +V+ N
Sbjct: 247 SFHSLEDRIVKRFMQALARPEQSAAPELRRAPLRAHELPAPQLRLLGR-VKPSEAEVSAN 305

Query: 304 RRSRSAKLRAGMR 316
            R+RSA +R   R
Sbjct: 306 PRARSAIMRVAER 318


>gi|170696713|ref|ZP_02887828.1| S-adenosyl-methyltransferase MraW [Burkholderia graminis C4D1M]
 gi|170138376|gb|EDT06589.1| S-adenosyl-methyltransferase MraW [Burkholderia graminis C4D1M]
          Length = 317

 Score =  187 bits (474), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 124/321 (38%), Positives = 188/321 (58%), Gaps = 20/321 (6%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMG--SNVIALD 65
           M+SA+ + +  H  VLLE+ +A L      V +D TFG GG+SR    K+G    +IA D
Sbjct: 1   MASAMRNEL-QHRTVLLEEAVAALVTRADGVYVDGTFGRGGHSRLVLEKLGQAGRLIAFD 59

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGD 122
           +DP A++  Q+       +F +   +F+ L+  + ++G++   GV+ DLGVSS Q+D  +
Sbjct: 60  KDPLAIATAQQI---GDPRFGIVHESFASLRTAIAERGIERVSGVLLDLGVSSPQVDDPE 116

Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF+  GPLDMRM  + G SA+D + +A V++LT ++   GEE+ A +IA A+V RR 
Sbjct: 117 RGFSFRADGPLDMRMDPTRGESAADWLARATVQELTEVIRDYGEERFAFQIAKALVARRA 176

Query: 182 SA----PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
            +    P  +T +L+ ++   V   +  +  PATR+FQA+RI +N E+ EL   L +A  
Sbjct: 177 ESDRLGPLVSTGELAQIVANVVKTREKGK-DPATRTFQAIRIHINQELAELQVVLEAALS 235

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA--HPAVFQSITKKVVVP 295
            L+ GG L+V+SFHSLEDR+VK+F  + +    AV   +P  A   P+    I  +V   
Sbjct: 236 LLEQGGRLVVISFHSLEDRIVKRFMQAHA-SAPAVDRRLPIRAVDLPSPPLKIIGRVFAS 294

Query: 296 TQEDVAFNRRSRSAKLRAGMR 316
             E VA N R+RSA +R   R
Sbjct: 295 DAE-VAANPRARSAVMRVAER 314


>gi|291542210|emb|CBL15320.1| S-adenosyl-methyltransferase MraW [Ruminococcus bromii L2-63]
          Length = 307

 Score =  187 bits (474), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 115/301 (38%), Positives = 170/301 (56%), Gaps = 11/301 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77
           H+PVLLE+ +  L      + +D T G GG+S           +I++D+DP A+    E 
Sbjct: 5   HIPVLLEQAVDALAVKENGIYVDGTAGGGGHSSEILSRLTTGKLISIDQDPDAILTLTER 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
            +   E   + +  F+ +   +  +GV   DGV+ D+GVSS Q+D  +RGFSF +  PLD
Sbjct: 65  FKK-NENSIIIKGNFADMVSLLHSRGVGRVDGVLLDIGVSSHQLDTAERGFSFHEDAPLD 123

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRMS SG +A+++VN     +L RIL + GEEK A  I + IVK R   P +TT +L+ +
Sbjct: 124 MRMSQSGTTAAELVNTLPAGELRRILSVYGEEKFAVAIVNGIVKARAEKPIETTLELAEI 183

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           I++ V        HPA +SFQALRI VN+E+  L +GL  A + L +GG L V++FHSLE
Sbjct: 184 IKENVPQRVRRDGHPARKSFQALRIAVNDELGVLERGLDGAFELLGSGGRLAVITFHSLE 243

Query: 255 DRLVKKFFASRSGKVMAVRHM---IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           DR+VK+  AS        +     +  N   A  + + +K V   + ++  N R+RSAKL
Sbjct: 244 DRIVKQKMASWCQGCTCPKDFPVCVCGNKPKA--KLVVRKPVCANETELRNNPRARSAKL 301

Query: 312 R 312
           R
Sbjct: 302 R 302


>gi|325134878|gb|EGC57511.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis M13399]
          Length = 328

 Score =  187 bits (474), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 117/306 (38%), Positives = 173/306 (56%), Gaps = 10/306 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMG--SNVIALDRDPFAVSCGQE 76
           H+ VLL + +  L      V +D TFG GG+SR    ++G    +I  D+DP A++  +E
Sbjct: 9   HITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFDKDPQAIAVAEE 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             R  K +  +    F+  Q  +   G   VDG +FDLG+SS QID G RGFSF+   PL
Sbjct: 69  LARSDK-RVGVVHGGFASFQAALDGLGIGKVDGALFDLGISSPQIDDGSRGFSFRFDAPL 127

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  + G+SA++ +  A+ +DL  ++   GEE+ + +IA AIV +R  +P  TT+ L+
Sbjct: 128 DMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRAESPIDTTRKLA 187

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            ++ + V   +  +  PATR+FQA+RIF+N E+EE+   L      LK GG L V++FHS
Sbjct: 188 QIVAQNVRTRERGQ-DPATRTFQAIRIFINRELEEVGAVLPQVMCRLKEGGRLAVIAFHS 246

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK+F    S      R      A  P +   I  + + P + ++A N R+RSA L
Sbjct: 247 LEDRIVKQFVKKYSQHAPLPRWAAVREADLPELPLKIVGRALKPGEAEIAANPRARSAVL 306

Query: 312 RAGMRT 317
           R   RT
Sbjct: 307 RVAERT 312


>gi|257784283|ref|YP_003179500.1| S-adenosyl-methyltransferase MraW [Atopobium parvulum DSM 20469]
 gi|257472790|gb|ACV50909.1| S-adenosyl-methyltransferase MraW [Atopobium parvulum DSM 20469]
          Length = 327

 Score =  187 bits (474), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 118/311 (37%), Positives = 175/311 (56%), Gaps = 16/311 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H PV+L +V+  L+P PG+V+ D T G  G++    K+ +     I +D+D  A      
Sbjct: 14  HQPVMLAEVLRELDPKPGEVVCDCTLGGAGHTVEMAKLIAPDGLSIGIDQDAMAHQAAAA 73

Query: 77  TMRDY--KEQFSLFQATFSQLQDY-----VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
            ++      +F   +  F  L +      VP  GVD  +FD+GVSS Q+D  +RGFS+ +
Sbjct: 74  RLKQEVPNAEFLPLKGNFGDLDELLVSAEVP--GVDCFLFDIGVSSPQLDIPERGFSYHE 131

Query: 130 SGPLDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
             PLDMRM       +A +V+N  N  DL RIL I G+EK ASRIA  IV+ R+  P QT
Sbjct: 132 DAPLDMRMDPGKQTPTAQEVINTYNEADLARILRIYGDEKFASRIARRIVQTREKRPIQT 191

Query: 188 TQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T +L  +I+  +   ++ +  HPA ++FQALRI VN+E+E L +GLRSA      GG + 
Sbjct: 192 TFELVEVIKAAIPAAARRHGGHPARKTFQALRIEVNHELEVLERGLRSAIAWANPGGRIC 251

Query: 247 VVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           V+S+HSLEDR+VK  F+  S G +      +       +   IT+K +V T E++  N R
Sbjct: 252 VISYHSLEDRIVKHVFSELSQGCICPPDLPVCMCGQVPIVDVITRKPLVATPEEIERNPR 311

Query: 306 SRSAKLRAGMR 316
           +RSA +R  ++
Sbjct: 312 ARSALMRVAVK 322


>gi|225023749|ref|ZP_03712941.1| hypothetical protein EIKCOROL_00613 [Eikenella corrodens ATCC
           23834]
 gi|224943631|gb|EEG24840.1| hypothetical protein EIKCOROL_00613 [Eikenella corrodens ATCC
           23834]
          Length = 318

 Score =  187 bits (474), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 120/315 (38%), Positives = 177/315 (56%), Gaps = 28/315 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQE 76
           HV VLL + +  L   PG V +D TFG GG+SR    K+G+N  ++  D+DP A++  ++
Sbjct: 8   HVTVLLHEAVDALEVKPGGVYVDGTFGRGGHSRLILSKLGANGRLVVFDKDPQAIAVARQ 67

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + +  ++  +    FS  Q  +   G   VDG +FDLGVSS QID  +RGFSF+   PL
Sbjct: 68  -LAEVDKRVQVVHGGFSGFQVALKGLGIEAVDGALFDLGVSSPQIDDAERGFSFRYDAPL 126

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  + G +A+  + +A  +++  ++   GEE+  S+IA AIV++RQ  P  TT  L+
Sbjct: 127 DMRMDTTRGQTAAQWLAEAGEEEIREVIRDYGEERFNSQIARAIVQQRQERPILTTGQLA 186

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            L  + V   +  +  PATR+FQA+RIF+N E+EE++  L  A   LK GG L V++FHS
Sbjct: 187 QLAAQAVRTRERGQ-DPATRTFQAIRIFINRELEEISAVLPQAAGYLKTGGRLAVIAFHS 245

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE----------DVAF 302
           LEDR+VK+F           RH  P+     V    +++   P +E          + A 
Sbjct: 246 LEDRIVKQFIR---------RHSRPTPLPKWVMVRESERPEPPLREIGKAQRASAAETAA 296

Query: 303 NRRSRSAKLRAGMRT 317
           N R+RSA LR   RT
Sbjct: 297 NPRARSAVLRVAERT 311


>gi|313673691|ref|YP_004051802.1| s-adenosyl-methyltransferase mraw [Calditerrivibrio nitroreducens
           DSM 19672]
 gi|312940447|gb|ADR19639.1| S-adenosyl-methyltransferase MraW [Calditerrivibrio nitroreducens
           DSM 19672]
          Length = 312

 Score =  187 bits (474), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 122/307 (39%), Positives = 176/307 (57%), Gaps = 12/307 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H+PVLLE+ +  LN   G V +D T G GG+S +  +  +   +I LDRDP A  C +  
Sbjct: 9   HIPVLLEEALHYLNVISGGVYVDCTGGGGGHSAAILEKINEGRLIILDRDPDA--CERLF 66

Query: 78  MRDYK--EQFSLFQATFSQLQDYVPDKGV--DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           +R +K      +    FS ++  +   G+  +G++ D GVSS QI    RGFSF+   PL
Sbjct: 67  IR-FKGVPNVDIINDNFSNIEKILDSMGLKANGILADFGVSSFQISNTGRGFSFRYDEPL 125

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM   + +SA DVVN  + + L  I+   GE+  A RIA+ IVK R      TT++L+
Sbjct: 126 DMRMDKKTDLSAYDVVNNLSQETLENIIKKYGEDPFAKRIAYVIVKYRNLKKITTTKELA 185

Query: 193 SLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I   V    + + IHPATR+FQA+RIFVN E+E +   L+S E  L + G  + +SFH
Sbjct: 186 EIIANAVPVKFHKKGIHPATRTFQAIRIFVNKELEAIESLLKSLENILVSKGRGVFISFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK F    + + +      I +      F+ +TKK V+P++++V  N  SRSAK
Sbjct: 246 SLEDRMVKDFLNYYAKQCICPPGQPICTCGKKQTFKVLTKKPVLPSKDEVIKNPYSRSAK 305

Query: 311 LRAGMRT 317
           LRAG R 
Sbjct: 306 LRAGERV 312


>gi|302036124|ref|YP_003796446.1| s-adenosyl-L-methionine-dependent methyltransferase mraW
           [Candidatus Nitrospira defluvii]
 gi|300604188|emb|CBK40520.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Candidatus Nitrospira defluvii]
          Length = 309

 Score =  187 bits (474), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 118/301 (39%), Positives = 172/301 (57%), Gaps = 20/301 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFG-AGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76
           H PVL+E+++  L   PG V +D T G AG  +R   +   +  ++ +DRD  A++  + 
Sbjct: 10  HEPVLVEEILFWLQCKPGGVYVDCTLGYAGLAARLLDRTAPDGILVGIDRDAAALAESRM 69

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +R+   +       F  L+  +   GV   DGV+FDLGVSS Q+D  +RGFSF++ GPL
Sbjct: 70  RLREVAHRVHFRHGNFCDLKALIIGSGVSRVDGVIFDLGVSSPQLDRAERGFSFREDGPL 129

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM    G +A+D+V      +L  ++  LGEE+ + RIA AIV+ R      TT  L+
Sbjct: 130 DMRMDQREGRTAADLVRDLPETELADLIYQLGEERYSRRIARAIVQARMQGVIATTWQLA 189

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           +++++ V  S ++ RIH ATR+FQALRI VN E++ L   LR A   L  GG +  VSFH
Sbjct: 190 AVVERAVPASYRHGRIHCATRTFQALRIAVNRELDVLEPALRDAVDILAPGGRVCAVSFH 249

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+VK  F +             +N   A  + +TKK V+ ++ +   N RSRSAKL
Sbjct: 250 SLEDRIVKHTFRA------------LANGPEASVRVLTKKPVIASENERNRNPRSRSAKL 297

Query: 312 R 312
           R
Sbjct: 298 R 298


>gi|309379057|emb|CBX22359.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 319

 Score =  187 bits (474), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 122/306 (39%), Positives = 170/306 (55%), Gaps = 10/306 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMG--SNVIALDRDPFAVSCGQE 76
           H+ VLL + +  L      V +D TFG GG+SR    ++G    ++  D+DP AV+  +E
Sbjct: 9   HITVLLHEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLVVFDKDPRAVAAAEE 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             R  K + S+    F+  Q  + D G   VDG +FDLGVSS QID   RGFSF+   PL
Sbjct: 69  LARSDK-RVSVVHGGFASFQTALDDLGIGDVDGALFDLGVSSPQIDDAARGFSFRFDAPL 127

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  + G+SA++ +  A+ +DL  ++   GEE+ + +IA AIV +R   P  TT+ L+
Sbjct: 128 DMRMDTTRGMSAAEWIASASEQDLHEVIKNYGEERFSRQIARAIVAQRAENPIDTTRKLA 187

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            L  + V   +  +  PATR+FQA+RIF+N E+EE+   L      LK GG L V++FHS
Sbjct: 188 QLAAQNVRTRERGQ-DPATRTFQAVRIFINRELEEVEAVLPQVMCRLKQGGRLAVIAFHS 246

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK+F    S      R      A  P     I  K + P   +VA N R+RSA L
Sbjct: 247 LEDRIVKQFVGKYSRHAPLPRWAAVREADLPEPPLKIVGKALKPGGAEVAANPRARSAVL 306

Query: 312 RAGMRT 317
           R   RT
Sbjct: 307 RVAERT 312


>gi|295399706|ref|ZP_06809687.1| S-adenosyl-methyltransferase MraW [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312111775|ref|YP_003990091.1| S-adenosyl-methyltransferase MraW [Geobacillus sp. Y4.1MC1]
 gi|294978109|gb|EFG53706.1| S-adenosyl-methyltransferase MraW [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311216876|gb|ADP75480.1| S-adenosyl-methyltransferase MraW [Geobacillus sp. Y4.1MC1]
          Length = 310

 Score =  187 bits (474), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 111/303 (36%), Positives = 177/303 (58%), Gaps = 11/303 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H  VLL++ +  L+  P    +D T G GG+S       S    + A D+D  A+   ++
Sbjct: 4   HTTVLLKEAVDGLHINPDGTYVDCTLGGGGHSEYLLSQLSEKGRLFAFDQDDMAIEYAKK 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  Y++Q +  +  F  L + +  +GV   DG++FDLGVSS Q+D  +RGFS+    PL
Sbjct: 64  RLARYEKQVTFIRRNFRFLAEELAARGVHKVDGILFDLGVSSPQLDTPERGFSYHHDAPL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+    ++A D+VN    + L  I    GEEK + ++A  I + R+    +TT +L 
Sbjct: 124 DMRMNREQPLTAYDIVNHWPYEKLVHIFFHYGEEKFSKQVARKIEEVRKEKRIETTGELV 183

Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           ++I++ +   ++ +  HPA R FQA+RI VN+E++   + +  A   LK+GG + V++FH
Sbjct: 184 NIIKEAIPAPARRSGGHPAKRIFQAIRIAVNDELQAFQEAITQAIDVLKSGGRISVITFH 243

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+ K  F  AS+S ++     +IP    P + + ITKK +VP++E+VA N R+RSA
Sbjct: 244 SLEDRICKATFKKASQSPQLPPGLPLIPEQYRPTL-KMITKKPIVPSEEEVAHNHRARSA 302

Query: 310 KLR 312
           KLR
Sbjct: 303 KLR 305


>gi|226948790|ref|YP_002803881.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum A2 str.
           Kyoto]
 gi|263446084|sp|C1FME6|RSMH_CLOBJ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|226843346|gb|ACO86012.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum A2 str.
           Kyoto]
          Length = 309

 Score =  187 bits (474), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 117/302 (38%), Positives = 169/302 (55%), Gaps = 9/302 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+ VLLE+ I  LN     V +D T G GG+S+   K  S+   +I +D+D  A+   +E
Sbjct: 5   HISVLLEETIDSLNIKEDGVYVDCTLGGGGHSKEILKKLSHKGKLIGIDQDTSAIKAAKE 64

Query: 77  TMRDYKEQFSL---FQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++DY+    +   F    S L++   DK VDG++ DLGVSS Q+D   RGFS+ K  PL
Sbjct: 65  RLKDYENVIYVHNNFYNIDSILEELDIDK-VDGIIMDLGVSSYQLDEASRGFSYMKDAPL 123

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+    +SA +VVN    ++L +IL   GEEK + +IA  IV++R   P +TT +L 
Sbjct: 124 DMRMNREENLSAYNVVNSYEEEELFKILKNYGEEKFSRKIARFIVEKRTENPIETTGELV 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I+K +        HPA R+FQA+RI VN E++ L + +  +   L   G L +++FHS
Sbjct: 184 EIIRKAIPAKFQREGHPAKRTFQAIRIEVNKELQILNKAIEDSVNRLNKDGRLSIITFHS 243

Query: 253 LEDRLVK-KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK KF              I         + ITKK + P++E+   N RSRSAKL
Sbjct: 244 LEDRIVKVKFKELEKPCTCPPSFPICVCGKEPQIKIITKKPIEPSKEEKEINSRSRSAKL 303

Query: 312 RA 313
           R 
Sbjct: 304 RV 305


>gi|222112157|ref|YP_002554421.1| s-adenosyl-methyltransferase mraw [Acidovorax ebreus TPSY]
 gi|263447303|sp|B9MFS0|RSMH_ACIET RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|221731601|gb|ACM34421.1| S-adenosyl-methyltransferase MraW [Acidovorax ebreus TPSY]
          Length = 308

 Score =  187 bits (474), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 122/306 (39%), Positives = 178/306 (58%), Gaps = 16/306 (5%)

Query: 20  HVPVLLEKVI-ALLNP--APGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSC 73
           H  VLL++ + ALL    AP    +D TFG GG+SR    ++G    ++A D+D  A+  
Sbjct: 7   HTTVLLDEAVHALLGDGDAPAGTFVDGTFGRGGHSRLILQRLGPQGRLVAFDKDTEAI-- 64

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            Q   R    +FS+    FS L + +P   V GV+ DLGVSS QID   RGFSF+  GPL
Sbjct: 65  -QAAARITDARFSIRHQGFSHLGE-LPAASVSGVLLDLGVSSPQIDDPQRGFSFRFDGPL 122

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR-QSAPFQTTQDL 191
           DMRM  + G S ++ +  A    +  ++   GEE+ A  IA AIV RR +  P  +T +L
Sbjct: 123 DMRMDTTRGQSVAEWLADAEAAQIAEVIRDYGEERFAGPIAKAIVARRTERGPISSTAEL 182

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++   V   +  + +PATR+FQALRIF+N E+EEL Q L  + + L+ GG L+V+SFH
Sbjct: 183 ADIVAGAVKTREPGQ-NPATRTFQALRIFINAELEELQQALEGSLRVLRPGGRLVVISFH 241

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+VK+F A  S +V   R    +   P   +++ +  + P+ ++VA N R+RSA +
Sbjct: 242 SLEDRIVKQFIAQHSKEVYDRRAPF-APPQPMRLKALER--IKPSTDEVAANARARSAVM 298

Query: 312 RAGMRT 317
           R   RT
Sbjct: 299 RVAERT 304


>gi|172057976|ref|YP_001814436.1| S-adenosyl-methyltransferase MraW [Exiguobacterium sibiricum
           255-15]
 gi|263447041|sp|B1YIU3|RSMH_EXIS2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|171990497|gb|ACB61419.1| S-adenosyl-methyltransferase MraW [Exiguobacterium sibiricum
           255-15]
          Length = 312

 Score =  187 bits (474), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 116/303 (38%), Positives = 174/303 (57%), Gaps = 10/303 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76
           +H  VL  + I  LN  P  + +D T G  G+S    K     ++ A D+D  A++   E
Sbjct: 3   EHETVLKWESIKGLNIKPDGIYVDCTLGGAGHSEEIVKQLTTGHLYAFDQDDVALAHAAE 62

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  Y+ +F+L ++ F  L++ +  + V   DG++FDLGVSS Q+D G+RGFS+     L
Sbjct: 63  RLAAYEGRFTLIKSNFVHLKEELEARSVTKVDGILFDLGVSSPQLDEGERGFSYNFDARL 122

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM   S +SA +VVN+    DL RIL   GEEK + +IA  I K R+ AP +TT +L 
Sbjct: 123 DMRMDQTSPLSAYEVVNEWPYNDLVRILFTYGEEKFSKQIARKIEKAREIAPIETTFELV 182

Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            LI+  +   ++    HPA R+FQA+RI VN+E+    + +  A   L  GG L V++FH
Sbjct: 183 ELIKDAIPAPARRKGGHPAKRTFQAIRIAVNDELNVFDRAVYQAIDLLAVGGRLCVITFH 242

Query: 252 SLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+ K+ F  +S   ++     MIP    P + + +T+K +    +++  NRRSRSA
Sbjct: 243 SLEDRMCKQAFKEKSSLPELPQGLPMIPKEFEPEL-RLVTRKPITAGDDELDDNRRSRSA 301

Query: 310 KLR 312
           KLR
Sbjct: 302 KLR 304


>gi|325142966|gb|EGC65323.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis 961-5945]
          Length = 328

 Score =  187 bits (474), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 117/306 (38%), Positives = 173/306 (56%), Gaps = 10/306 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMG--SNVIALDRDPFAVSCGQE 76
           H+ VLL + +  L      V +D TFG GG+SR    ++G    +I  D+DP A++  +E
Sbjct: 9   HITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFDKDPQAIAVAEE 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             R  K +  +    F+  Q  +   G   VDG +FDLG+SS QID G RGFSF+   PL
Sbjct: 69  LARSDK-RVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGSRGFSFRFDAPL 127

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  + G+SA++ +  A+ +DL  ++   GEE+ + +IA AIV +R  +P  TT+ L+
Sbjct: 128 DMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRAESPIDTTRKLA 187

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            ++ + V   +  +  PATR+FQA+RIF+N E+EE+   L      LK GG L V++FHS
Sbjct: 188 QIVAQNVRTRERGQ-DPATRTFQAVRIFINRELEEVGAVLPQVMCRLKEGGRLAVIAFHS 246

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK+F    S      R      A  P +   I  + + P + ++A N R+RSA L
Sbjct: 247 LEDRIVKQFVKKYSQHAPLPRWAAVREADLPELPLKIVGRALKPGEAEIAANPRARSAVL 306

Query: 312 RAGMRT 317
           R   RT
Sbjct: 307 RVAERT 312


>gi|332712413|ref|ZP_08432340.1| S-adenosyl-methyltransferase MraW [Lyngbya majuscula 3L]
 gi|332348887|gb|EGJ28500.1| S-adenosyl-methyltransferase MraW [Lyngbya majuscula 3L]
          Length = 304

 Score =  187 bits (474), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 118/301 (39%), Positives = 166/301 (55%), Gaps = 22/301 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           HV VL +++I  L   PG   LDAT G GG++        +V   A+DRD  A++  +  
Sbjct: 15  HVSVLSQELIEGLAICPGGHYLDATVGGGGHTELILAAAPDVEVTAIDRDANAIAAAKTR 74

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
           +  Y  + + +Q  F++ Q    D+  DG++ DLGVSS Q+D  +RGFSF+ +  LDMRM
Sbjct: 75  LASYNGRVNFWQGNFAEYQPN--DRVFDGIIADLGVSSAQLDLPERGFSFRHAAQLDMRM 132

Query: 138 SCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
             S  ++A D++N      L  +    GEE+ + R+A  IV++R   PFQTT +L++ I 
Sbjct: 133 DQSQSLTAKDIINNWGEVRLADVFYKYGEERLSRRMARRIVEKR---PFQTTTELANAIA 189

Query: 197 KTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
             V    +  RIHPATR FQALRI VN E+E L   L  A   LK GG L ++SFHSLED
Sbjct: 190 SCVPPKYRYGRIHPATRVFQALRIVVNQELESLESFLDIAPHWLKPGGRLGIISFHSLED 249

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           R+VK  F   S                ++ + +TKK  V   E++  N R+RSAKLR   
Sbjct: 250 RIVKHKFRELSTNC-------------SLLRVLTKKPTVAQAEEIQHNPRARSAKLRFAE 296

Query: 316 R 316
           R
Sbjct: 297 R 297


>gi|229117415|ref|ZP_04246791.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus Rock1-3]
 gi|228666025|gb|EEL21491.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus Rock1-3]
          Length = 310

 Score =  187 bits (474), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 113/303 (37%), Positives = 173/303 (57%), Gaps = 11/303 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HV VLL++ +  L+  P    +D T G GG+S         G  +IA D+D  A+   +E
Sbjct: 4   HVTVLLKETVDGLDIKPDGTYVDCTLGGGGHSSYLLSQLTDGGKLIAFDQDEIAIQNAKE 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
               Y EQF   ++ F  L + + + G   VDG++FDLGVSS Q+D  +RGFS+    PL
Sbjct: 64  KFSSYGEQFITVKSNFRYLSEKLQELGITEVDGILFDLGVSSPQLDTPERGFSYHHDAPL 123

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     ++A DV+N  + + L RI    GEEK + +IA  I   R++   +TT +L 
Sbjct: 124 DMRMDQDAPLTAYDVINSWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTGELV 183

Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            LI++ +   ++    HPA R FQA+RI VN+E++   + L SA + +K GG + V++FH
Sbjct: 184 ELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIELVKPGGRVSVITFH 243

Query: 252 SLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+ K  F   S + ++     +IP    P + + IT+K ++P+  ++  N R+RSA
Sbjct: 244 SLEDRICKTTFKRNSTTPQLPPGLPIIPDEFKPKL-KLITRKPILPSDIELEENNRARSA 302

Query: 310 KLR 312
           KLR
Sbjct: 303 KLR 305


>gi|125973496|ref|YP_001037406.1| S-adenosyl-methyltransferase MraW [Clostridium thermocellum ATCC
           27405]
 gi|263446119|sp|A3DE34|RSMH_CLOTH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|125713721|gb|ABN52213.1| S-adenosyl-methyltransferase MraW [Clostridium thermocellum ATCC
           27405]
          Length = 313

 Score =  187 bits (474), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 113/304 (37%), Positives = 169/304 (55%), Gaps = 11/304 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H PVLLE+ I+ L   P  V +D T G  G+S    K       +I LD+D FA+   QE
Sbjct: 5   HKPVLLEETISNLAIKPDGVYIDGTVGGAGHSGEILKRLDESGTLIGLDQDEFAIKTSQE 64

Query: 77  TMR--DYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +   + K +  L    F  +++       + VDG++ DLGVSS Q+D   RGFS+ K  
Sbjct: 65  KLVQINSKAKIILVNTNFVNIKEVCQKNNIESVDGILLDLGVSSHQLDEASRGFSYNKDA 124

Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM   G ++A  +VN+   +++ RI+   GEEK ASRIA  IV+ R+    +TT +
Sbjct: 125 PLDMRMDRRGELTAKKIVNEYGREEIKRIIRDYGEEKWASRIAEFIVEARKKKEIETTGE 184

Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I+  +  S +    HPA R+FQALRI VNNE+  LA+ +    + LK GG   +++
Sbjct: 185 LVDIIKAAIPSSARRGGPHPAKRTFQALRIAVNNELGILAKTIEDGTELLKPGGRFCIIT 244

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK  F  +    +  +   + +         + +K +VP ++++  N R+RS
Sbjct: 245 FHSLEDRIVKDEFNKKVNPCICPKQFPVCTCGRKPEGVLVNRKPIVPKEKELEENPRARS 304

Query: 309 AKLR 312
           AKLR
Sbjct: 305 AKLR 308


>gi|317501224|ref|ZP_07959429.1| S-adenosyl-L-methionine-dependent methyltransferase mraW 2
           [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331090030|ref|ZP_08338919.1| ribosomal RNA small subunit methyltransferase H 2 [Lachnospiraceae
           bacterium 3_1_46FAA]
 gi|316897400|gb|EFV19466.1| S-adenosyl-L-methionine-dependent methyltransferase mraW 2
           [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330402492|gb|EGG82061.1| ribosomal RNA small subunit methyltransferase H 2 [Lachnospiraceae
           bacterium 3_1_46FAA]
          Length = 311

 Score =  187 bits (474), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 109/304 (35%), Positives = 175/304 (57%), Gaps = 11/304 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQ 75
           +HV VLL + +  LN  P  V +DAT G GG++   C+ +GS    I +D+D  A+    
Sbjct: 4   EHVSVLLNETVDGLNVKPDGVYVDATLGGGGHAYEVCRRLGSKGRFIGIDQDADAIKAAG 63

Query: 76  ETMRDYKEQFSLFQATF----SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           E ++ + E+ ++ ++ +     QLQ+   DK VDG+V DLGVSS Q+D  +RGFS++   
Sbjct: 64  ERLKGFGEKVTIIRSNYRDMKPQLQNIGVDK-VDGIVIDLGVSSYQLDTAERGFSYRVDA 122

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM     ++A D+VN+ +  +L R++   GE+K A  IA  IV+ R+  P +TT  
Sbjct: 123 PLDMRMDQRQKMTARDIVNEYSESELYRVIRDYGEDKFAKNIAKHIVEERRKNPIETTGQ 182

Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I   +    +    HP+ R+FQA+RI +N+E++ L + L    + L  GG + +++
Sbjct: 183 LNEIISHAIPMKFRKTSGHPSKRTFQAIRIELNHELDVLRESLDDMIEMLNPGGRICIIT 242

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK  F           H  +      +  + IT+K ++P++ +   N RS+S
Sbjct: 243 FHSLEDRIVKSAFRKNENPCTCPSHFPVCVCGKISKGKVITRKPILPSEAETESNSRSKS 302

Query: 309 AKLR 312
           AKLR
Sbjct: 303 AKLR 306


>gi|330957978|gb|EGH58238.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 313

 Score =  187 bits (474), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 117/305 (38%), Positives = 175/305 (57%), Gaps = 16/305 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76
           H+ VLLE+ +  L        LD TFG GG+SR   S       ++  D+DP A++ GQ 
Sbjct: 7   HITVLLEEAVEALAVRADGCYLDGTFGRGGHSRLILSHLGPDGRLLGFDKDPQAIATGQ- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            +     +F + Q +F++L   V ++G    V G++ DLGVSS Q+D  +RGFSF   GP
Sbjct: 66  ALAAEDGRFVIVQRSFAELGSEVQERGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDGP 125

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G+SA++ +  A  +++ R+    GEE+ A R+A+A+V+RR+  PF+ T DL
Sbjct: 126 LDMRMDPTRGVSAAEFIASAPAEEIARVFKEYGEERFAKRMANAVVQRREIQPFERTADL 185

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++ K    +     +PATR+FQ LRI VNNE+ +L  GL +A   L+ GG L+V+SFH
Sbjct: 186 AEVL-KVANPAWEKGKNPATRAFQGLRIHVNNELGDLEAGLEAALDTLEIGGRLVVISFH 244

Query: 252 SLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQ---SITKKVVVPTQEDVAFNRRSR 307
           SLEDR+VK F    + G+   +   +P    P  F+    I  K    +  +   N RSR
Sbjct: 245 SLEDRIVKLFMRKLAKGEADNMPRDLPIQFKP--FEPKIKIHGKAQFASDAETKANPRSR 302

Query: 308 SAKLR 312
           SA +R
Sbjct: 303 SAVMR 307


>gi|229541208|ref|ZP_04430268.1| S-adenosyl-methyltransferase MraW [Bacillus coagulans 36D1]
 gi|229325628|gb|EEN91303.1| S-adenosyl-methyltransferase MraW [Bacillus coagulans 36D1]
          Length = 309

 Score =  186 bits (473), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 113/302 (37%), Positives = 170/302 (56%), Gaps = 10/302 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77
           H  VLL++ +  L+  P  + +D T G GG+S    +   G ++ A D+D  A+   +E 
Sbjct: 4   HKTVLLKETVDGLHIKPDGIYVDCTLGGGGHSAYLLQQLTGGHLYAFDQDETAIQHAKEK 63

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
               + + +  ++ F  L+  +  +GV   DG+++DLGVSS Q+D  +RGFS+Q   PLD
Sbjct: 64  FAHDQNRITFIKSNFRYLKSELNARGVQAVDGILYDLGVSSPQLDTPERGFSYQHDAPLD 123

Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM   + ++A +VVN+   + L RI    GEEK + +IA  I   R   P +TT +L+ 
Sbjct: 124 MRMDLDTPLTAYEVVNEWPYEKLVRIFFRYGEEKFSKQIARKIEASRAKKPIETTGELAD 183

Query: 194 LIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           LI++ +   ++    HPA R FQA+RI VN+E+      L  A   LK GG + V++FHS
Sbjct: 184 LIKEAIPAPARRKGGHPAKRVFQAIRIAVNDELSAFETSLTDAISLLKPGGRVSVITFHS 243

Query: 253 LEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           LEDR+ K      S +G +     +IP    P V + IT+K +VP  E+V  N RSRSAK
Sbjct: 244 LEDRICKNILKEYSSAGDLPHGLPVIPKEYEP-VLKLITRKPIVPNDEEVGENNRSRSAK 302

Query: 311 LR 312
           LR
Sbjct: 303 LR 304


>gi|254805557|ref|YP_003083778.1| S-adenosyl-methyltransferase [Neisseria meningitidis alpha14]
 gi|254669099|emb|CBA07673.1| S-adenosyl-methyltransferase [Neisseria meningitidis alpha14]
          Length = 328

 Score =  186 bits (473), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 117/306 (38%), Positives = 173/306 (56%), Gaps = 10/306 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMG--SNVIALDRDPFAVSCGQE 76
           H+ VLL + +  L      V +D TFG GG+SR    ++G    +I  D+DP A++  +E
Sbjct: 9   HITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFDKDPQAIAVAEE 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             R  K +  +    F+  Q  +   G   VDG +FDLG+SS QID G RGFSF+   PL
Sbjct: 69  LARSDK-RVGVVHGGFASFQAALDGLGIGKVDGALFDLGISSPQIDDGSRGFSFRFDAPL 127

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  + G+SA++ +  A+ +DL  ++   GEE+ + +IA AIV +R  +P  TT+ L+
Sbjct: 128 DMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRAESPIDTTRKLA 187

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            ++ + V   +  +  PATR+FQA+RIF+N E+EE+   L      LK GG L V++FHS
Sbjct: 188 QIVAQNVRTRERGQ-DPATRTFQAVRIFINRELEEVGAVLPQVMCRLKEGGRLAVIAFHS 246

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK+F    S      R      A  P +   I  + + P + ++A N R+RSA L
Sbjct: 247 LEDRIVKQFVKKYSQHAPLPRWAAVREADLPELPLKIVGRALKPGEAEIAANPRARSAVL 306

Query: 312 RAGMRT 317
           R   RT
Sbjct: 307 RVAERT 312


>gi|121635455|ref|YP_975700.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis FAM18]
 gi|262825519|sp|A1KVM4|RSMH_NEIMF RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|120867161|emb|CAM10928.1| conserved hypothetical protein [Neisseria meningitidis FAM18]
 gi|325132957|gb|EGC55634.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis M6190]
 gi|325138945|gb|EGC61495.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis ES14902]
 gi|325144950|gb|EGC67233.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis
           M01-240013]
          Length = 328

 Score =  186 bits (473), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 117/306 (38%), Positives = 173/306 (56%), Gaps = 10/306 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMG--SNVIALDRDPFAVSCGQE 76
           H+ VLL + +  L      V +D TFG GG+SR    ++G    +I  D+DP A++  +E
Sbjct: 9   HITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFDKDPQAIAVAEE 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             R  K +  +    F+  Q  +   G   VDG +FDLG+SS QID G RGFSF+   PL
Sbjct: 69  LARSDK-RVGVVHGGFASFQAALDGLGIGKVDGALFDLGISSPQIDDGSRGFSFRFDAPL 127

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  + G+SA++ +  A+ +DL  ++   GEE+ + +IA AIV +R  +P  TT+ L+
Sbjct: 128 DMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRAESPIDTTRKLA 187

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            ++ + V   +  +  PATR+FQA+RIF+N E+EE+   L      LK GG L V++FHS
Sbjct: 188 QIVAQNVRTRERGQ-DPATRTFQAVRIFINRELEEVGAVLPQVMCRLKEGGRLAVIAFHS 246

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK+F    S      R      A  P +   I  + + P + ++A N R+RSA L
Sbjct: 247 LEDRIVKQFVKKYSQHAPLPRWAAVREADLPELPLKIVGRALKPGEAEIAANPRARSAVL 306

Query: 312 RAGMRT 317
           R   RT
Sbjct: 307 RVAERT 312


>gi|296133667|ref|YP_003640914.1| S-adenosyl-methyltransferase MraW [Thermincola sp. JR]
 gi|296032245|gb|ADG83013.1| S-adenosyl-methyltransferase MraW [Thermincola potens JR]
          Length = 319

 Score =  186 bits (473), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 112/313 (35%), Positives = 177/313 (56%), Gaps = 9/313 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HVPV+L++ I+ LN  P  + +D T G  G+S    K       ++ +D+D  A++ G++
Sbjct: 5   HVPVMLDESISHLNIKPDGIYVDCTLGGAGHSAEILKKIQPNGFLVGIDQDINAIAAGEK 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +++    + L  + F++++D + + G   VDGV+FDLGVSS Q+D   RGFS++   PL
Sbjct: 65  RLKNIGSNYRLVHSNFNRIRDILEELGIYRVDGVLFDLGVSSYQLDQIQRGFSYKVDAPL 124

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+    ++A  +VN     +L +I+   GEE+ A RIA  IV+ R      TT  L 
Sbjct: 125 DMRMNPLEPVTARILVNGLTEDELAKIISEYGEERWARRIAKFIVEARAREEISTTGQLV 184

Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  V   ++    HPA R+FQALRI VN+E+ +    LR A + L  GG + V+SFH
Sbjct: 185 EIIKNAVPAGARKEGPHPAKRTFQALRIAVNDELNKFKSALRDAIEVLAPGGRICVISFH 244

Query: 252 SLEDRLVKKFFASRSGK-VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+ K+ F   + + V      + +     + + IT K + P+  ++  N R+RSAK
Sbjct: 245 SLEDRITKEMFRDLAKECVCPPEFPVCTCGTVPMLKIITNKPIEPSAAEIERNPRARSAK 304

Query: 311 LRAGMRTVERSIE 323
           LR   R V ++ E
Sbjct: 305 LRVAERLVLKNGE 317


>gi|317182020|dbj|BAJ59804.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori F57]
          Length = 308

 Score =  186 bits (473), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 117/303 (38%), Positives = 178/303 (58%), Gaps = 18/303 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVSCGQET 77
           H  VLL++V+    P    V++D T G GG+S++    K    +I +D+D FA    +E 
Sbjct: 8   HQSVLLQEVLQAFVPLEEGVLIDCTLGLGGHSKAILSQKPHLKLIGIDKDKFAQEIAKER 67

Query: 78  MRDYKEQFSLFQATFSQ-----LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           ++ ++ +++L    F++     L+ +  DK + GV+ DLGVSS+Q+D  +RGF+F  S  
Sbjct: 68  LKAFEGRYNLLSGGFAKRFKEALETH--DKEIKGVLVDLGVSSLQLDDDNRGFNFH-SHA 124

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM   S ++A  V+N   +  L +I    GE K+  +IAH I +RR   PF+  +DL
Sbjct: 125 LDMRMDLESDLNAQKVINYYPIVALEKIFRDYGEIKEYKKIAHKIAERRAKKPFKDAKDL 184

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           S  +      SKN +IHPAT  FQA+RI VN E+EEL + L+ A + LK G +L V+SFH
Sbjct: 185 SDFLSS---LSKNKKIHPATLVFQAVRIEVNRELEELKEFLQCA-RNLK-GAILCVISFH 239

Query: 252 SLEDRLVKKFFASRSGKVMA--VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLED LVK  F   +   +   +      + + A+ + +TKK + P+ E++  NRRSRSA
Sbjct: 240 SLEDALVKNAFKDYAKNCICDPLSFKCTCSNNYALGEILTKKPITPSPEEIKNNRRSRSA 299

Query: 310 KLR 312
           K+R
Sbjct: 300 KMR 302


>gi|317495032|ref|ZP_07953404.1| MraW methylase [Gemella moribillum M424]
 gi|316914804|gb|EFV36278.1| MraW methylase [Gemella moribillum M424]
          Length = 312

 Score =  186 bits (473), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 113/306 (36%), Positives = 171/306 (55%), Gaps = 18/306 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H  VLL + +A LN     V +D T G  G+S    K  ++  + A D+D  A+   ++ 
Sbjct: 4   HYSVLLNEAVAGLNIKENGVYVDCTLGGAGHSLEILKQLTDGKLYAFDQDSVALENAKDK 63

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++DY ++    ++ F  L++ + + GV   DGV++DLGVSS Q+D  +RGFS+     LD
Sbjct: 64  LKDYADKVVFIKSNFKNLREKLLEHGVTEVDGVLYDLGVSSPQLDTPERGFSYNYDTRLD 123

Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM     ISA ++VN+ +  +L +I    GEEK + +IA  + K+R   P +TT +L  
Sbjct: 124 MRMDTDAKISAYEIVNEYDYNELVKIFYRYGEEKFSKQIARNVEKKRLEKPIETTFELVD 183

Query: 194 LIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +I++++  +K     HPA R FQA+RI VNNE+      L  A   +K  G + V++FHS
Sbjct: 184 IIKESIPAAKRRTGGHPAKRVFQAIRIAVNNELSVFEDSLEQAIDIVKKDGRISVITFHS 243

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSN------AHPAVFQSITKKVVVPTQEDVAFNRRS 306
           LEDR+ K+ F S      A R  IP N         A  + IT+K + PT +++  N RS
Sbjct: 244 LEDRICKQIFNS-----YAKRKEIPKNLPILPEESLAKLKIITRKPIYPTDKELEENNRS 298

Query: 307 RSAKLR 312
           RSAKLR
Sbjct: 299 RSAKLR 304


>gi|296313573|ref|ZP_06863514.1| S-adenosyl-methyltransferase MraW [Neisseria polysaccharea ATCC
           43768]
 gi|296839874|gb|EFH23812.1| S-adenosyl-methyltransferase MraW [Neisseria polysaccharea ATCC
           43768]
          Length = 319

 Score =  186 bits (473), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 117/306 (38%), Positives = 172/306 (56%), Gaps = 10/306 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMG--SNVIALDRDPFAVSCGQE 76
           H+ VLL + +  L      + +D TFG GG+SR    ++G    +I  D+DP A++  +E
Sbjct: 9   HITVLLNEAVDALAVREDGIYVDGTFGRGGHSRLILSRLGDAGRLIVFDKDPQAIAVAEE 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             R  K +  +    F   Q  + D G   VDG +FDLG+SS QID G RGFSF+   PL
Sbjct: 69  LARSDK-RVGVVHGGFVSFQTALDDLGIGKVDGALFDLGISSPQIDDGSRGFSFRFDAPL 127

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  + G+SA++ +  A+ +DL  ++   GEE+ + +IA AIV +R  +P  TT+ L+
Sbjct: 128 DMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRAESPIDTTRKLA 187

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            ++ + V   +  +  PATR+FQA+RIF+N E+EE+   L      LK GG L V++FHS
Sbjct: 188 QIVAQNVRTRERGQ-DPATRTFQAVRIFINRELEEVGAVLPQVMCRLKQGGRLAVIAFHS 246

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK+F    S      R      A  P     I  + + P + ++A N R+RSA L
Sbjct: 247 LEDRIVKQFVKKYSQHAPLPRWAAVREADLPEPPLKIVGRALKPGEAEIAANPRARSAVL 306

Query: 312 RAGMRT 317
           R   RT
Sbjct: 307 RVAERT 312


>gi|313500445|gb|ADR61811.1| MraW [Pseudomonas putida BIRD-1]
          Length = 315

 Score =  186 bits (473), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 121/305 (39%), Positives = 176/305 (57%), Gaps = 14/305 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMG--SNVIALDRDPFAVSCGQ 75
           +H+ VLL++ +  L        LD TFG GG+SR    K+G    ++  D+DP A++ GQ
Sbjct: 8   NHITVLLDEAVEALALRADGCYLDGTFGRGGHSRLILSKLGPQGRLLGFDKDPQAIATGQ 67

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
             +     +F + Q +F++L   V  +G    V GV+ DLGVSS Q+D  +RGFSF   G
Sbjct: 68  -ALAAEDGRFVIVQRSFAELGAEVAARGLHGKVSGVLLDLGVSSPQLDDPERGFSFLNDG 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+   GISA++ +  A V+++ R+    GEE+ A R+A A+V+RR+  PF  T D
Sbjct: 127 PLDMRMNPDQGISAAEFIATAPVEEIARVFKEYGEERFAGRMARAVVERREKQPFTRTAD 186

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ ++ K    +     +PATR+FQ LRI VNNE+ +L  GL +A  AL+ GG L V+SF
Sbjct: 187 LAEVL-KVANPAWEKGKNPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLAVISF 245

Query: 251 HSLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQSI--TKKVVVPTQEDVAFNRRSR 307
           HSLEDR+VK F      G+   +   +P   H A    I    K    ++ ++  N RSR
Sbjct: 246 HSLEDRIVKLFMRKLVKGEADNLPRNLPVQ-HKAFEPKIKLIGKAQFASEAELKANPRSR 304

Query: 308 SAKLR 312
           SA +R
Sbjct: 305 SAVMR 309


>gi|315646023|ref|ZP_07899144.1| S-adenosyl-methyltransferase MraW [Paenibacillus vortex V453]
 gi|315278784|gb|EFU42098.1| S-adenosyl-methyltransferase MraW [Paenibacillus vortex V453]
          Length = 317

 Score =  186 bits (473), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 114/309 (36%), Positives = 174/309 (56%), Gaps = 16/309 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQE 76
           H+ VL ++    L   P  + +D T G  G+S     ++ SN  +IALD+D +A++  +E
Sbjct: 4   HITVLKQEATEGLRIKPDGIYVDCTLGGAGHSSLIASQLSSNGRLIALDQDDWALNNARE 63

Query: 77  TMRDYKEQFSLFQATFSQLQDY------VPDKG---VDGVVFDLGVSSMQIDCGDRGFSF 127
            M+ Y ++ +L +  F  L++       V + G   VDG++FDLGVSS Q D G+RGFS+
Sbjct: 64  VMKPYVDRITLVKTNFRDLEEVLRIEVGVDENGQPQVDGILFDLGVSSPQFDEGERGFSY 123

Query: 128 QKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
               PLDMRM  S  ++A+ +VN+   +++ RIL   GEEK + RIA  IV+RR   P  
Sbjct: 124 NHDAPLDMRMDQSAELTAAKIVNEWPEQEIARILYEYGEEKFSRRIAKVIVERRVQGPIH 183

Query: 187 TTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           TT +L  +I++ +   ++    HPA RSFQA RI VN+E+      L  A + L  GG +
Sbjct: 184 TTGELVEMIKEGIPAAARRTGGHPAKRSFQAFRIAVNDELGAFKDALHQAVRCLAPGGRV 243

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            V++FHSLEDR+ K+ F S   K        M          + + +K ++P+ E++  N
Sbjct: 244 SVITFHSLEDRICKQIFNSYIPKCTCPPDFPMCVCGGGQGDLKLVNRKPLIPSVEEIESN 303

Query: 304 RRSRSAKLR 312
            R+RSAKLR
Sbjct: 304 PRARSAKLR 312


>gi|302528477|ref|ZP_07280819.1| MraW methylase [Streptomyces sp. AA4]
 gi|302437372|gb|EFL09188.1| MraW methylase [Streptomyces sp. AA4]
          Length = 318

 Score =  186 bits (473), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 116/313 (37%), Positives = 172/313 (54%), Gaps = 14/313 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGK---VILDATFGAGGYS----RSFCKMGSNVIALDRDPFAV 71
           +HVPVLL++++ L  PA      V++DAT G GG+S     +F ++   +I LDRDP A+
Sbjct: 6   EHVPVLLDRIVELFAPALADRDAVLVDATVGLGGHSDALLSAFPRL--RLIGLDRDPAAL 63

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQ 128
               E +  + ++  L    +  L + V   G   VDG++FDLGVSSMQ+D  +RGF++ 
Sbjct: 64  ERSAERLARHGDRVDLVHTVYDGLPEAVSGLGLSRVDGILFDLGVSSMQLDRAERGFAYS 123

Query: 129 KSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           +  PLDMRM   +G +A+DV+N     +L RIL   GEE+ A RI  A+V  R+  PF  
Sbjct: 124 QDAPLDMRMDPTTGFTAADVLNTYAPGELIRILRDYGEERFAQRIVRAVVAEREKEPFTR 183

Query: 188 TQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           +  L  L+   V   S+    HPA R+FQALRI VN E+E L + + +A   L   G ++
Sbjct: 184 SGRLVELLYSAVPAASRRTGGHPAKRTFQALRIEVNGELEVLRRAMPAALGTLAMNGRIV 243

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V S+ SLEDRLVK+  A R+         +    H    + +T+      + ++  N R+
Sbjct: 244 VESYQSLEDRLVKQALAERAKSRTPEGLPVELPGHGPELKLLTRGAEKAGESEIEHNPRA 303

Query: 307 RSAKLRAGMRTVE 319
            S +LRA  R  E
Sbjct: 304 ASVRLRAAQRIGE 316


>gi|188527446|ref|YP_001910133.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori Shi470]
 gi|226709922|sp|B2UTC1|RSMH_HELPS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|188143686|gb|ACD48103.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori Shi470]
          Length = 308

 Score =  186 bits (473), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 118/302 (39%), Positives = 177/302 (58%), Gaps = 16/302 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVSCGQET 77
           H  VLL++V+    P    V++D T G GG+S++    K    +I +D+D FA    +E 
Sbjct: 8   HQSVLLQEVLQAFAPLEEGVLIDCTLGLGGHSKAILSQKPHLKLIGIDKDKFAQEIAKER 67

Query: 78  MRDYKEQFSLFQATFSQ-LQDYVP--DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++ ++ +++L    F++  ++ +   DK + GV+ DLGVSS+Q+D   RGF+F  S  LD
Sbjct: 68  LKAFEGRYNLLSGGFAKRFKEALEMHDKEIKGVLVDLGVSSLQLDDDSRGFNFH-SHALD 126

Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM   S ++A  V+N   V  L +I    GE K+  +IAH I +RR   PF+  +DLS 
Sbjct: 127 MRMDLESDLNAQKVINSYPVVALEKIFKDYGEIKEYKKIAHKIAERRAKKPFKDAKDLSD 186

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
            +      SKN +IHPAT  FQA+RI VN+E+EEL + L+ A    +A  +L V+SFHSL
Sbjct: 187 FLSS---LSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCARNLKEA--ILCVISFHSL 241

Query: 254 EDRLVKKFFASRSGKVM---AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           ED LVK  F   +   +   +      SN H A+ + +TKK + P+ E++  NRRSRSAK
Sbjct: 242 EDALVKNAFKDYAKNCICDPSSFKCTCSNNH-ALGEILTKKPITPSPEEIKNNRRSRSAK 300

Query: 311 LR 312
           +R
Sbjct: 301 MR 302


>gi|168180112|ref|ZP_02614776.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum NCTC 2916]
 gi|182668973|gb|EDT80949.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum NCTC 2916]
          Length = 309

 Score =  186 bits (473), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 117/302 (38%), Positives = 168/302 (55%), Gaps = 9/302 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+ VLLE+ I  LN     V +D T G GG+S+   K  S+   +I +D+D  A+   +E
Sbjct: 5   HISVLLEETIDSLNIKEDGVYVDCTLGGGGHSKEILKKLSHKGKLIGIDQDTSAIKAAKE 64

Query: 77  TMRDYKEQFSL---FQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++DY+    +   F    S L++   DK VDG++ DLGVSS Q+D   RGFS+ K  PL
Sbjct: 65  RLKDYENVIYVHNNFYNIDSILEELDIDK-VDGIIMDLGVSSYQLDEASRGFSYMKDAPL 123

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+     SA +VVN    ++L +IL   GEEK + +IA  IV++R   P +TT +L 
Sbjct: 124 DMRMNREENFSAYNVVNNYEEEELFKILKNYGEEKFSRKIARFIVEKRTENPIETTGELV 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I+K +        HPA R+FQA+RI VN E++ L + +  +   L   G L +++FHS
Sbjct: 184 EIIRKAIPAKFQREGHPAKRTFQAIRIEVNKELQILNKAIEDSVNRLNKDGRLSIITFHS 243

Query: 253 LEDRLVK-KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK KF              I         + ITKK + P++E+   N RSRSAKL
Sbjct: 244 LEDRIVKVKFKELEKPCTCPPSFPICVCGKEPQIKIITKKPIEPSKEEKEINSRSRSAKL 303

Query: 312 RA 313
           R 
Sbjct: 304 RV 305


>gi|310642996|ref|YP_003947754.1| ribosomal RNA small subunit methyltransferase h [Paenibacillus
           polymyxa SC2]
 gi|309247946|gb|ADO57513.1| Ribosomal RNA small subunit methyltransferase H [Paenibacillus
           polymyxa SC2]
          Length = 316

 Score =  186 bits (473), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 113/308 (36%), Positives = 174/308 (56%), Gaps = 15/308 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQE 76
           H+ VL E+    LN     + +D T G  G+S     ++G    +IA D+D +A++  +E
Sbjct: 4   HITVLKEEATQALNIRQDGIYVDCTLGGAGHSSVIASQLGPEGRLIAFDQDDWALNNARE 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---------VDGVVFDLGVSSMQIDCGDRGFSF 127
            +  Y+ + SL ++ F  LQD + + G         V G++FDLGVSS Q D G+RGFS+
Sbjct: 64  KLSAYEGKISLVKSNFRHLQDKLAELGLPEKDGVPQVQGILFDLGVSSPQFDEGERGFSY 123

Query: 128 QKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
               PLDMRM   S ++A ++VN+    ++ RIL   GEEK + RIA  +V+RR + P  
Sbjct: 124 NHDAPLDMRMDQSSSLTAYEIVNEWPEAEIARILFQYGEEKFSRRIAKIMVERRMNKPIH 183

Query: 187 TTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           TT +L  +I++ +   ++    HPA RSFQALRI VN+E+  L   L  A + L  GG +
Sbjct: 184 TTGELVDIIKEGIPAAARRTGGHPAKRSFQALRIAVNDELGALEDTLHQAVRCLAPGGRI 243

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
            V++FHSLEDR+ K  F     K +    + I  +      + + +K +V +++++  N 
Sbjct: 244 SVITFHSLEDRICKHIFKEYLAKSIYPSDLPILDDKMVGDLKLVNRKPIVASEQELELNP 303

Query: 305 RSRSAKLR 312
           RSRSAKLR
Sbjct: 304 RSRSAKLR 311


>gi|213691742|ref|YP_002322328.1| S-adenosyl-methyltransferase MraW [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|263445910|sp|B7GQ70|RSMH_BIFLI RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|213523203|gb|ACJ51950.1| S-adenosyl-methyltransferase MraW [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320457836|dbj|BAJ68457.1| S-adenosyl-methyltransferase [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 359

 Score =  186 bits (473), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 120/306 (39%), Positives = 167/306 (54%), Gaps = 13/306 (4%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74
           H+PVLL+  + L+ PA      V +D T G  G+S +F K    + +I +DRD  A+   
Sbjct: 8   HLPVLLDDCVNLMAPALEHENAVAVDCTLGLAGHSIAFLKTAPQARLIGIDRDSEALGLA 67

Query: 75  QETMR--DYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK 129
            E M      ++F    A F QL   + D+G   VD V  DLG+SS+QID  DRGFS+  
Sbjct: 68  AERMEREGLADRFIPVHAAFDQLDQVLTDRGIERVDAVFMDLGLSSLQIDETDRGFSYSH 127

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM  S  ++A  ++   +  +L RI    GEE+ + +IA AIV  R   PF TT
Sbjct: 128 DAPLDMRMDVSQPLTAERILATYDAAELVRIFKEYGEERFSRQIARAIVAHRDKEPFTTT 187

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ L+ + V  +     +PA R FQALRI VN E+++LA  L  A   L  GG L+V 
Sbjct: 188 AQLNRLVDEVVPQAHRPAGNPAKRVFQALRIEVNGELDKLASTLPQAANRLHVGGRLVVE 247

Query: 249 SFHSLEDRLVKKFFA-SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           S+HSLED+ VK F A      V A   +IP +A P  F  +T+  +   + ++A N RS 
Sbjct: 248 SYHSLEDKTVKSFMAQGLRVDVPAGLPVIPPDAQP-FFTDLTRGAIKADEHEIAANPRSA 306

Query: 308 SAKLRA 313
           S +LRA
Sbjct: 307 SVRLRA 312


>gi|296454440|ref|YP_003661583.1| S-adenosyl-methyltransferase MraW [Bifidobacterium longum subsp.
           longum JDM301]
 gi|296183871|gb|ADH00753.1| S-adenosyl-methyltransferase MraW [Bifidobacterium longum subsp.
           longum JDM301]
          Length = 359

 Score =  186 bits (473), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 120/306 (39%), Positives = 167/306 (54%), Gaps = 13/306 (4%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74
           H+PVLL+  + L+ PA      +  D T G  G+S +F K    + +I +DRD  A+   
Sbjct: 8   HLPVLLDDCVNLMVPALEHENAIAADCTLGLAGHSIAFLKAAPQARLIGIDRDSEALGLA 67

Query: 75  QETMR--DYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK 129
            E M      ++F    A F QL   + D+G   VD V  DLG+SS+QID  DRGFS+  
Sbjct: 68  TERMEREGLADRFIPVHAAFDQLDQVLTDRGIERVDAVFMDLGLSSLQIDETDRGFSYSH 127

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM  S  ++A  ++   +  +L RI    GEE+ + +IA AIV RR   PF TT
Sbjct: 128 DAPLDMRMDVSQPLTAERILATYDAAELVRIFKEYGEERFSRQIARAIVARRDKEPFTTT 187

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ L+ + V  +     +PA R FQALRI VN E+++LA  L  A   L  GG L+V 
Sbjct: 188 AQLNRLVDEVVPQAHRPAGNPAKRVFQALRIEVNGELDKLASTLPQAANRLHVGGRLVVE 247

Query: 249 SFHSLEDRLVKKFFA-SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           S+HSLED+ VK F A      V A   +IP +A P  F  +T+  +   + ++A N RS 
Sbjct: 248 SYHSLEDKTVKSFMAQGLRVDVPAGLPVIPPDAQP-FFTDLTRGAIKAGEHEIAANPRSA 306

Query: 308 SAKLRA 313
           S +LRA
Sbjct: 307 SVRLRA 312


>gi|254673389|emb|CBA08689.1| S-adenosyl-methyltransferase [Neisseria meningitidis alpha275]
 gi|319411060|emb|CBY91460.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis WUE 2594]
          Length = 328

 Score =  186 bits (472), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 117/306 (38%), Positives = 173/306 (56%), Gaps = 10/306 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMG--SNVIALDRDPFAVSCGQE 76
           H+ VLL++ +  L      V +D TFG GG+SR    ++G    +I  D+DP A++  +E
Sbjct: 9   HITVLLDEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFDKDPQAIAVAEE 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             R  K +  +    F+  Q  +   G   VDG +FDLG+SS QID G RGFSF+   PL
Sbjct: 69  LARSDK-RVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGSRGFSFRFDAPL 127

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  + G+SA++ +  A+ +DL  ++   GEE+ + +IA AIV +R  +P  TT+ L+
Sbjct: 128 DMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRAESPIDTTRKLA 187

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            ++ + V   +  +  PATR+FQA+RIF+N E+EE+   L      LK GG L V++FHS
Sbjct: 188 QIVAQNVRTRERGQ-DPATRTFQAVRIFINRELEEVGAVLPQVMCRLKEGGRLAVIAFHS 246

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK+F    S      R      A  P     I  + + P + ++A N R+RSA L
Sbjct: 247 LEDRIVKQFVKKYSQHAPLPRWAAVREADLPEPPLKIVGRALKPGEAEIAANPRARSAVL 306

Query: 312 RAGMRT 317
           R   RT
Sbjct: 307 RVAERT 312


>gi|145588347|ref|YP_001154944.1| S-adenosyl-methyltransferase MraW [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|262824872|sp|A4SV66|RSMH_POLSQ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|145046753|gb|ABP33380.1| S-adenosyl-methyltransferase MraW [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 316

 Score =  186 bits (472), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 124/312 (39%), Positives = 194/312 (62%), Gaps = 29/312 (9%)

Query: 20  HVPVLL-EKVIALL--------NPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRD 67
           H PVLL E V AL+        N A   V++D TFG GG++++  K   M + VI+ D+D
Sbjct: 5   HRPVLLAEAVTALISGPLIQEKNAAKKIVVIDGTFGRGGHTQALLKSLEMSARVISFDKD 64

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
             A+S  Q+ ++D +  F++   +F+ +  Y   + VDG++ DLG+SS Q+D   RGFSF
Sbjct: 65  LDAISVAQQ-IQDPR--FTIVHDSFAHMDQYAQAESVDGILLDLGISSPQVDEAHRGFSF 121

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV-KRRQSAPF 185
           ++ GPLDMRM+   G++A++ + QA  +++TR++   GEE+ A +IA AIV KR +    
Sbjct: 122 RREGPLDMRMNTDQGLTAAEWLEQAPQEEITRVIKTYGEERFAFQIAKAIVAKREEGLSP 181

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           +TT +L+SL+   V   +  +  PATR+FQALRIF+N E+E+L  GL++A K LK G  L
Sbjct: 182 KTTTELASLVASVVRTREAGQ-DPATRTFQALRIFINRELEDLELGLKAALKLLKPGARL 240

Query: 246 IVVSFHSLEDRLVKKFFASRSG----KVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDV 300
            V+SFHSLEDR+VK+FF + +     + + VR   +P +A   + +      V P+  ++
Sbjct: 241 AVISFHSLEDRIVKQFFQAHAKVEIPRGLPVREKDLPQSALEIIGR------VKPSDLEI 294

Query: 301 AFNRRSRSAKLR 312
           + N R+RSA +R
Sbjct: 295 SENPRARSAIMR 306


>gi|329907257|ref|ZP_08274578.1| S-adenosyl-methyltransferase MraW [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327547063|gb|EGF31946.1| S-adenosyl-methyltransferase MraW [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 316

 Score =  186 bits (472), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 117/307 (38%), Positives = 173/307 (56%), Gaps = 14/307 (4%)

Query: 20  HVPVLLEKVI---ALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSC 73
           H  VLLE+ +   AL       + LD TFG GG+SR   S    G  +IA D+DP A++ 
Sbjct: 7   HRTVLLEEAVEALALQGARTDGIYLDGTFGRGGHSRRILSALGAGGRLIAFDKDPQAIAS 66

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130
             E       +F +   +F+ L   +  +GV   DGV+ DLG+SS Q+D   RGFSF+  
Sbjct: 67  AGEIA---DPRFDIVHDSFATLDLALSARGVGLVDGVLLDLGISSPQVDDAARGFSFRAD 123

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
           GPLDMRM  + G+SA++ +     +++ +++   GEE+ A +IA AI   R   P  +T+
Sbjct: 124 GPLDMRMDTTRGLSAAEWLATETEQNIEKVIRNYGEERFAFQIAKAIAASRTIEPISSTR 183

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            L+ ++ +TV   +  +  PATR+FQA+RI++N E+EEL  GL+ A   L   G L+V+S
Sbjct: 184 QLAQIVARTVKTREKGK-DPATRTFQAIRIYINQELEELEIGLQQAYARLAPHGRLVVIS 242

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDR+VK+F AS++      R +          + I      P+ E+VA N RSRSA
Sbjct: 243 FHSLEDRIVKRFMASKAHVEQPDRRLPIRAVDLPQPEMILISKAKPSTEEVAGNPRSRSA 302

Query: 310 KLRAGMR 316
            +R   R
Sbjct: 303 VMRVAQR 309


>gi|261391925|emb|CAX49387.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis 8013]
          Length = 328

 Score =  186 bits (472), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 117/306 (38%), Positives = 173/306 (56%), Gaps = 10/306 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMG--SNVIALDRDPFAVSCGQE 76
           H+ VLL + +  L      V +D TFG GG+SR    ++G    +I  D+DP A++  +E
Sbjct: 9   HITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFDKDPQAIAVAEE 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             R  K +  +    F+  Q  +   G   VDG +FDLG+SS QID G RGFSF+   PL
Sbjct: 69  LARSDK-RVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGSRGFSFRFDAPL 127

Query: 134 DMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM +  G+SA++ +  A+ +DL  ++   GEE+ + +IA AIV +R  +P  TT+ L+
Sbjct: 128 DMRMDTMRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRAESPIDTTRKLA 187

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            ++ + V   +  +  PATR+FQA+RIF+N E+EE+   L      LK GG L V++FHS
Sbjct: 188 QIVAQNVRTRERGQ-DPATRTFQAVRIFINRELEEVGAVLPQVMCRLKEGGRLAVIAFHS 246

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK+F    S      R      A  P +   I  + + P + ++A N R+RSA L
Sbjct: 247 LEDRIVKQFVKKYSQHAPLPRWAAVREADLPELPLKIVGRALKPGEAEIAANPRARSAVL 306

Query: 312 RAGMRT 317
           R   RT
Sbjct: 307 RVAERT 312


>gi|328675727|gb|AEB28402.1| S-adenosyl-methyltransferase MraW [Francisella cf. novicida 3523]
          Length = 305

 Score =  186 bits (472), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 122/307 (39%), Positives = 181/307 (58%), Gaps = 22/307 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN-VIALDRDPFAVSCGQET 77
           H  VLL++ I  LN  P  + +DATFG GG+S++   K+ +  +IA D+D  A+S   + 
Sbjct: 2   HYSVLLQESINDLNINPQGIYIDATFGRGGHSKAILDKLTTGRLIAFDKDLDAISYANQ- 60

Query: 78  MRDYKEQFSLFQ---ATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
               K QFS F+   A+F+ + DY         +DG++ DLGVSS Q+D   RGFSF   
Sbjct: 61  ----KFQFSNFEIVHASFASIYDYCLQHNLLSKIDGIIMDLGVSSPQLDNAARGFSFMHD 116

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTT 188
           GPLDMRM  S GI+AS  +   +V +L+ I  + GEE+ A +IA  I    +Q+    TT
Sbjct: 117 GPLDMRMDVSKGITASQALEVLSVDELSYIFKVYGEERFARKIALRIKDYIQQNGSINTT 176

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ LI+ T+   K  + +PATR FQALRI+VNNE+++L   L +    +KAGG +  +
Sbjct: 177 LELAELIRMTI--GKREKKNPATRCFQALRIYVNNELKDLEALLENILAVIKAGGRIAAI 234

Query: 249 SFHSLEDRLVKKFFASR---SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           SFHSLEDR+VK+ F++      ++  +  M+P ++     + ITKK      +++  N R
Sbjct: 235 SFHSLEDRIVKQKFSALINPKQELNRITKMLPQDSSQIKLKWITKK-AKANDDELNQNVR 293

Query: 306 SRSAKLR 312
           SRSA LR
Sbjct: 294 SRSAILR 300


>gi|153938691|ref|YP_001390802.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum F str.
           Langeland]
 gi|263446093|sp|A7GDE2|RSMH_CLOBL RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|152934587|gb|ABS40085.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum F str.
           Langeland]
 gi|295318872|gb|ADF99249.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum F str.
           230613]
          Length = 309

 Score =  186 bits (472), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 117/302 (38%), Positives = 168/302 (55%), Gaps = 9/302 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+ VLLE+ I  LN     V +D T G GG+S+   K  S+   +I +D+D  A+   +E
Sbjct: 5   HISVLLEETIDSLNIKEDGVYVDCTLGGGGHSKEILKKLSHKGKLIGIDQDTSAIKAAKE 64

Query: 77  TMRDYKEQFSL---FQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++DY+    +   F    S L++   DK VDG++ DLGVSS Q+D   RGFS+ K  PL
Sbjct: 65  KLKDYENIIYVHNNFYNIDSILEELDIDK-VDGIIMDLGVSSYQLDEASRGFSYMKDAPL 123

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+     SA +VVN    ++L +IL   GEEK + +IA  IV++R   P +TT +L 
Sbjct: 124 DMRMNREENFSAYNVVNSYEEEELFKILKNYGEEKFSRKIARFIVEKRTENPIETTGELV 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I+K +        HPA R+FQA+RI VN E++ L + +  +   L   G L +++FHS
Sbjct: 184 EIIRKAIPAKFQREGHPAKRTFQAIRIEVNKELQILNKAIEDSVNRLNKDGRLSIITFHS 243

Query: 253 LEDRLVK-KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK KF              I         + ITKK + P++E+   N RSRSAKL
Sbjct: 244 LEDRIVKVKFKELEKPCTCPPSFPICVCGKEPQIKIITKKPIEPSKEEKEINSRSRSAKL 303

Query: 312 RA 313
           R 
Sbjct: 304 RV 305


>gi|91776629|ref|YP_546385.1| methyltransferase [Methylobacillus flagellatus KT]
 gi|123078758|sp|Q1GYZ3|RSMH_METFK RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|91710616|gb|ABE50544.1| methyltransferase [Methylobacillus flagellatus KT]
          Length = 321

 Score =  186 bits (472), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 126/322 (39%), Positives = 183/322 (56%), Gaps = 17/322 (5%)

Query: 9   MSSAIHHT----IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--V 61
           MS+ I H     +  HV VLLE+ +  L+  P  V +D TFG GG+SR    K+G+   +
Sbjct: 1   MSAGISHVPAAQVSQHVTVLLEEAVEALSIKPDGVYVDGTFGRGGHSRKILEKLGAQGRL 60

Query: 62  IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQI 118
           +ALDRD  A+   Q  ++D +  F +  + F+ +   +     + VDGV+ DLG+SS QI
Sbjct: 61  VALDRDLAAIQAAQ-GIQDAR--FKIVHSHFAAMAQVLASLNIQQVDGVLLDLGISSPQI 117

Query: 119 DCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177
           D G+RGFSF+  GPLDMRM  S G +A++ +  A  ++LTR++   GEE+ A +IA AIV
Sbjct: 118 DEGERGFSFRFDGPLDMRMDQSRGQTAAEFIATATEQELTRVIKEYGEERFAKQIARAIV 177

Query: 178 KRRQSA-PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236
            +R       TT  L+ ++   V   +  +  PATR+FQALRIF+N E+EEL+  L    
Sbjct: 178 AQRAGGMDISTTGQLAKIVAGAVPKVEPGQ-DPATRTFQALRIFINQELEELSLTLPQCL 236

Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVP 295
             L   G L V+SFHSLEDR+VK+F      +     H  + ++  P        + V P
Sbjct: 237 SLLAPQGRLAVISFHSLEDRIVKRFIRGEQDRDNLPAHFPVRASDLPQPRLVAIGRAVRP 296

Query: 296 TQEDVAFNRRSRSAKLRAGMRT 317
           ++++V  N RSRSA LR   RT
Sbjct: 297 SEDEVRRNPRSRSAVLRVAERT 318


>gi|325995985|gb|ADZ51390.1| rRNA small subunit methyltransferase H [Helicobacter pylori 2018]
 gi|325997580|gb|ADZ49788.1| S-adenosyl methyltransferase [Helicobacter pylori 2017]
          Length = 308

 Score =  186 bits (472), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 119/302 (39%), Positives = 180/302 (59%), Gaps = 16/302 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVSCGQET 77
           H  VLL++V+    P    V++D T G GG+S++    K    +I +D+D FA    +E 
Sbjct: 8   HQSVLLQEVLQAFTPLEEGVLIDCTLGLGGHSKAILSQKPHLKLIGIDKDKFAQEIAKER 67

Query: 78  MRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +++++ +++L    F++  ++ +   G  + GV+ DLGVSS+Q+D  +RGF+F +S  LD
Sbjct: 68  LKEFEGRYNLLSGGFAKRFKEALEIHGERIKGVLVDLGVSSLQLDDDNRGFNF-RSHALD 126

Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM   S ++A  V+N   V  L +I    GE K+  +IAH I +RR   PF+  +DLS 
Sbjct: 127 MRMDLESELNAQKVINSYPVVALEKIFRDYGEIKEYKKIAHKIAERRAKKPFKDAKDLSE 186

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
            +      SKN +IHPAT  FQA+RI VN+E+EEL + L+ A + LK G +L V+SFHSL
Sbjct: 187 FLSS---LSKNKKIHPATLVFQAVRIEVNSELEELKEFLQYA-RNLK-GAILCVISFHSL 241

Query: 254 EDRLVKKFFASRSGKVM---AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           ED LVK  F   +   +   +      SN H A+   +TKK + P+ E++  NRRSRSAK
Sbjct: 242 EDGLVKNAFKDYAKNCICDPSSFKCACSNNH-ALGAILTKKPITPSPEEIKNNRRSRSAK 300

Query: 311 LR 312
           +R
Sbjct: 301 MR 302


>gi|309783013|ref|ZP_07677732.1| S-adenosyl-methyltransferase MraW [Ralstonia sp. 5_7_47FAA]
 gi|308918121|gb|EFP63799.1| S-adenosyl-methyltransferase MraW [Ralstonia sp. 5_7_47FAA]
          Length = 319

 Score =  186 bits (472), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 119/313 (38%), Positives = 182/313 (58%), Gaps = 21/313 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VLLE+ +  L      + +D TFG GG+SR   +    G  ++A D+DP A++    
Sbjct: 11  HQTVLLEEAVDALIWRDDGIYIDGTFGRGGHSRRILERLGPGGRLVAFDKDPAAITEAG- 69

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           T+ D +  F++   +F+Q+   +  +G++   GV+ DLG+SS QID G RGFSF+  GPL
Sbjct: 70  TVEDAR--FAIEHDSFAQMAQCLDARGIERVAGVLLDLGISSPQIDEGARGFSFRMDGPL 127

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR----QSAPFQTT 188
           DMRM  + GI+A+  + +A+ +D+ R++   GEE+ A +IA AIV RR       P   T
Sbjct: 128 DMRMDTTRGITAAQWLAEADERDIARVIRDYGEERFAVQIAKAIVARRGQSGDRGPLDRT 187

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L++L+ + V   +  +  PATR+FQALRI VN E+ +L  GL++A + L+ GG L+V+
Sbjct: 188 SELAALVAQAVKTREKGQ-DPATRTFQALRIHVNQELADLETGLKAAFERLEQGGRLVVI 246

Query: 249 SFHSLEDRLVKKF---FASRSGKVMAVRHMIPSNAH--PAVFQSITKKVVVPTQEDVAFN 303
           SFHSLEDR+VK+F    A             P  AH  P     +  + V P++ +V+ N
Sbjct: 247 SFHSLEDRIVKRFMQALARPEQSAAPELRRAPLRAHELPTPQLRLLGR-VKPSEAEVSAN 305

Query: 304 RRSRSAKLRAGMR 316
            R+RSA +R   R
Sbjct: 306 PRARSAIMRVAER 318


>gi|313200234|ref|YP_004038892.1| s-adenosyl-methyltransferase mraw [Methylovorus sp. MP688]
 gi|312439550|gb|ADQ83656.1| S-adenosyl-methyltransferase MraW [Methylovorus sp. MP688]
          Length = 321

 Score =  186 bits (472), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 126/317 (39%), Positives = 186/317 (58%), Gaps = 25/317 (7%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVS 72
            +  HV VLLE+ +A L   P  + +D TFG GG+SR    ++G++  ++ LDRD  AVS
Sbjct: 12  VVSPHVSVLLEEAVAALAIKPNGIYVDGTFGRGGHSRKILEQLGADGRLLGLDRDLAAVS 71

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK 129
             Q +++D +  FS+    FS+L + +  +    VDGV+ DLG+SS QID G+RGFSF+ 
Sbjct: 72  AAQ-SIQDPR--FSIHHHHFSELGEVLRAQDIQQVDGVLLDLGISSPQIDEGERGFSFRF 128

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA-PFQT 187
            GPLDMRM  S G +A++ + +A+ + LT ++   GEE+ A ++A AIV  R       T
Sbjct: 129 DGPLDMRMDQSRGQTAAEFLAEASEQQLTGVIKEYGEERFAKQVARAIVAARTGGNALTT 188

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T  L+ ++   +   +  +  PATR+FQALRIF+N E+EEL+  L     AL  GG L V
Sbjct: 189 TGQLAKVVAGAIPKVEPGQ-DPATRTFQALRIFLNQELEELSLVLPQCLDALAPGGRLAV 247

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK-------KVVVPTQEDV 300
           +SFHSLEDR+VK+F  S        R  +P+N  P + + + +       K + P+  ++
Sbjct: 248 ISFHSLEDRIVKRFVRSEQD-----RDDLPAN-FPVLAKDLPQPRMMAVGKPIKPSAAEI 301

Query: 301 AFNRRSRSAKLRAGMRT 317
             N RSRSA LR   RT
Sbjct: 302 KRNPRSRSAVLRVAERT 318


>gi|322805771|emb|CBZ03336.1| rRNAsmall subunit methyltransferase H [Clostridium botulinum H04402
           065]
          Length = 309

 Score =  186 bits (472), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 118/304 (38%), Positives = 170/304 (55%), Gaps = 13/304 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+ VLLE+ I  LN     V +D T G GG+S+   K  S+   +I +D+D  A+   +E
Sbjct: 5   HISVLLEETIDSLNIKEDGVYVDCTLGGGGHSKEILKKLSHKGKLIGIDQDTSAIKAAKE 64

Query: 77  TMRDYKEQFSL---FQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++DY+    +   F    S L++   DK VDG++ DLGVSS Q+D   RGFS+ K  PL
Sbjct: 65  KLKDYENIIYVHNNFYNIDSILEELDIDK-VDGIIMDLGVSSYQLDEASRGFSYMKDAPL 123

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+     SA +VVN    ++L +IL   GEEK + +IA  IV++R   P +TT +L 
Sbjct: 124 DMRMNREENFSAYNVVNSYEEEELFKILKNYGEEKFSRKIARFIVEKRTENPIETTGELV 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I+K +        HPA R+FQA+RI VN E++ L + +  +   L   G L +++FHS
Sbjct: 184 EIIRKAIPAKFQREGHPAKRTFQAIRIEVNKELQILNKAIEDSVNRLNKDGRLSIITFHS 243

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIP---SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           LEDR+VK  F     K        P       P + + ITKK + P++E+   N RSRSA
Sbjct: 244 LEDRIVKVKFKELE-KPCTCPPSFPICVCRKEPQI-KIITKKPIEPSKEEKEINSRSRSA 301

Query: 310 KLRA 313
           KLR 
Sbjct: 302 KLRV 305


>gi|90416328|ref|ZP_01224260.1| S-adenosyl-methyltransferase [marine gamma proteobacterium
           HTCC2207]
 gi|90332053|gb|EAS47267.1| S-adenosyl-methyltransferase [marine gamma proteobacterium
           HTCC2207]
          Length = 309

 Score =  186 bits (472), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 107/302 (35%), Positives = 168/302 (55%), Gaps = 6/302 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H  VLL + I  +   P    +D TFG GG++       S    V+A+D+DP A+  G++
Sbjct: 9   HTSVLLHEAIDAVVTDPDGFYIDGTFGRGGHTAELLSRLSEHGRVLAIDKDPQAIEAGRK 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
              D   + ++   +F+ + D+   + V GV+ DLGVSS Q+D  +RGFSF + GPLDMR
Sbjct: 69  RFAD-DSRLTIVHGSFADMGDWREGREVTGVLLDLGVSSPQLDQAERGFSFMRDGPLDMR 127

Query: 137 M-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M + SG+SA++ ++ A   D+ +++   GEE+ A R+A A+V+ R  AP   T  L+ ++
Sbjct: 128 MDTSSGLSAAEWIDTAAEADIAQVIKEFGEERFAKRMAAAVVRERDLAPITRTVQLAKIL 187

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
                  +  + HPAT++FQA+RIF+N E+++L   L      LK  G L+V+SFHSLED
Sbjct: 188 ADAHPAWERGK-HPATKAFQAIRIFINRELDDLVALLEQVIDLLKIDGRLVVISFHSLED 246

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           R VK+F   +   +   +++   +    V      K + P   +V  N RSRSA +R   
Sbjct: 247 RKVKRFIRDQERGIKLPKNLPVRDVERGVRLKKIGKAIKPEAVEVGGNVRSRSAVMRVAE 306

Query: 316 RT 317
           R 
Sbjct: 307 RV 308


>gi|308069889|ref|YP_003871494.1| S-adenosyl-methyltransferase mraW [Paenibacillus polymyxa E681]
 gi|305859168|gb|ADM70956.1| S-adenosyl-methyltransferase mraW [Paenibacillus polymyxa E681]
          Length = 316

 Score =  186 bits (472), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 111/308 (36%), Positives = 175/308 (56%), Gaps = 15/308 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQE 76
           H+ VL E+    LN     + +D T G  G+S     ++G    +IA D+D +A++  +E
Sbjct: 4   HITVLKEEATQALNIRQDGIYVDCTLGGAGHSSVIASQLGPEGRLIAFDQDDWALNNARE 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---------VDGVVFDLGVSSMQIDCGDRGFSF 127
            +  Y+ + SL ++ F  LQD + + G         V G++FDLGVSS Q D G+RGFS+
Sbjct: 64  KLSAYEGKISLVKSNFRHLQDKLTELGLPEKDGVPQVQGILFDLGVSSPQFDEGERGFSY 123

Query: 128 QKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
               PLDMRM   S ++A ++VN+ +  ++ RIL   GEEK + RIA  +++RR + P  
Sbjct: 124 NHDAPLDMRMDQSSSLTAYEIVNEWSEAEIARILFHYGEEKFSRRIAKIMIERRLNKPIH 183

Query: 187 TTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           TT +L  +I++ +   ++    HPA RSFQALRI VN+E+  L   L  A + L  GG +
Sbjct: 184 TTGELVDIIKEGIPAAARRTGGHPAKRSFQALRIAVNDELGALEDSLHQAIRCLAPGGRI 243

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
            V++FHSLEDR+ K  F     K +    + I  +      + + +K ++ +++++  N 
Sbjct: 244 SVITFHSLEDRICKHIFKEYLAKSIYPSDLPILEDKMEGDLKLVNRKPIMASEQELELNP 303

Query: 305 RSRSAKLR 312
           RSRSAKLR
Sbjct: 304 RSRSAKLR 311


>gi|208434621|ref|YP_002266287.1| hypothetical protein HPG27_664 [Helicobacter pylori G27]
 gi|226709921|sp|B5Z772|RSMH_HELPG RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|208432550|gb|ACI27421.1| hypothetical protein HPG27_664 [Helicobacter pylori G27]
          Length = 308

 Score =  186 bits (472), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 118/302 (39%), Positives = 175/302 (57%), Gaps = 16/302 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVSCGQET 77
           H  VLL++V+    P    V++D T G GG+S++    K    +I +D+D FA    +E 
Sbjct: 8   HQSVLLQEVLQAFTPLEEGVLVDCTLGLGGHSKALLSQKPHLKLIGIDKDKFAQEIAKER 67

Query: 78  MRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++ ++ +++L    F++  ++ +   G  + GV+ DLGVSS+Q+D  +RGF+F  S  LD
Sbjct: 68  LKAFEGRYNLLSGGFAKRFKEALEIHGDRIKGVLVDLGVSSLQLDDDNRGFNFH-SHALD 126

Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM   S ++A  V+N   V  L +I    GE K+  +IAH I +RR   PF+  +DLS 
Sbjct: 127 MRMDLESDLNAQKVINSYPVIALEKIFRDYGEIKEYKKIAHKIAERRAKKPFKDAKDLSD 186

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
            +     FSKN +IHPAT  FQA+RI VN+E+EEL + L+ A      G +L V+SFHSL
Sbjct: 187 FLSS---FSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCARNL--NGAILCVISFHSL 241

Query: 254 EDRLVKKFFASRSGKVMA---VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           ED LVK  F   +   +          SN H A+   +TKK + P+ E++  NRRSRSAK
Sbjct: 242 EDGLVKNAFKDYAKNCICDPLSFQCTCSNNH-ALGAILTKKPITPSPEEIKNNRRSRSAK 300

Query: 311 LR 312
           +R
Sbjct: 301 MR 302


>gi|218768820|ref|YP_002343332.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis Z2491]
 gi|20139195|sp|Q9JSY9|RSMH_NEIMA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|121052828|emb|CAM09176.1| conserved hypothetical protein [Neisseria meningitidis Z2491]
 gi|308388613|gb|ADO30933.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis alpha710]
 gi|325130837|gb|EGC53570.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis
           OX99.30304]
 gi|325136978|gb|EGC59575.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis M0579]
 gi|325208773|gb|ADZ04225.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis NZ-05/33]
          Length = 328

 Score =  186 bits (472), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 117/306 (38%), Positives = 172/306 (56%), Gaps = 10/306 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMG--SNVIALDRDPFAVSCGQE 76
           H+ VLL + +  L      V +D TFG GG+SR    ++G    +I  D+DP A++  +E
Sbjct: 9   HITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFDKDPQAIAVAEE 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             R  K +  +    F+  Q  +   G   VDG +FDLG+SS QID G RGFSF+   PL
Sbjct: 69  LARSDK-RVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGSRGFSFRFDAPL 127

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  + G+SA++ +  A+ +DL  ++   GEE+ + +IA AIV +R  +P  TT+ L+
Sbjct: 128 DMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRAESPIDTTRKLA 187

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            ++ + V   +  +  PATR+FQA+RIF+N E+EE+   L      LK GG L V++FHS
Sbjct: 188 QIVAQNVRTRERGQ-DPATRTFQAIRIFINRELEEVGAVLPQVMCRLKEGGRLAVIAFHS 246

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK+F    S      R      A  P     I  + + P + ++A N R+RSA L
Sbjct: 247 LEDRIVKQFVKKYSQHAPLPRWAAVREADLPEPPLKIAGRALKPGEAEIAANPRARSAVL 306

Query: 312 RAGMRT 317
           R   RT
Sbjct: 307 RVAERT 312


>gi|257467026|ref|ZP_05631337.1| methyltransferase [Fusobacterium gonidiaformans ATCC 25563]
          Length = 313

 Score =  186 bits (472), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 113/311 (36%), Positives = 180/311 (57%), Gaps = 22/311 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+PVL E+ +  L   P  + +D T G G +S    K  S    +I++D+D  A++  ++
Sbjct: 9   HIPVLYEETLDQLVWNPDGIYIDCTLGGGSHSEGILKRLSEKGRLISIDQDANAIAFCKK 68

Query: 77  TMRDYKEQFSLFQATFSQLQ--DYVP--DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            +  + +Q+S+FQ  F  +    Y+   DK VDG++ D+GVSS Q+D G+RGFS++    
Sbjct: 69  RLEKHGKQWSVFQNNFENIDIVSYLAGVDK-VDGILMDIGVSSTQLDDGERGFSYRYDAK 127

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+    +SA +VVN    +DL RIL   GEE+ A +IA  I + R+  P +TT +L
Sbjct: 128 LDMRMNKEQDLSAYEVVNTYAEQDLVRILFEYGEERHAKKIASFICENRKEKPIETTGEL 187

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            ++I++   +S+    HPA ++FQA+RI VN E+E L + ++ +   LK  G L +++FH
Sbjct: 188 VAIIKRA--YSERASKHPAKKTFQAIRIEVNRELEVLEKAIQKSVDLLKPKGHLAIITFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSN------AHPAVFQSITKKVVVPTQEDVAFNRR 305
           SLEDRLVK  F     K +A     P           A  + +TKK ++P+++++  N R
Sbjct: 246 SLEDRLVKTVF-----KDLATACKCPPELPVCVCGGKAKVKILTKKPIIPSEDELGKNNR 300

Query: 306 SRSAKLRAGMR 316
           + S+KLR   R
Sbjct: 301 AHSSKLRVVER 311


>gi|262202917|ref|YP_003274125.1| S-adenosyl-methyltransferase MraW [Gordonia bronchialis DSM 43247]
 gi|262086264|gb|ACY22232.1| S-adenosyl-methyltransferase MraW [Gordonia bronchialis DSM 43247]
          Length = 336

 Score =  186 bits (472), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 117/320 (36%), Positives = 185/320 (57%), Gaps = 23/320 (7%)

Query: 20  HVPVLLEKVIALLNPA----PGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSC 73
           H+PVL  ++  LL P+      +V++DAT GAGG++        N+  + +DRD  A++ 
Sbjct: 16  HLPVLAARMAELLAPSLESGDERVLVDATLGAGGHAELMLNRFPNLRLVGIDRDAHALAI 75

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            ++ +    ++ SL QA F QL   + D    G+DG +FDLGVSSMQ+D   RGF++   
Sbjct: 76  AEKRLAPMADRISLHQARFDQLPQVLADAAIDGIDGALFDLGVSSMQLDQPGRGFAYAID 135

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM+   G++A+DV+N  +  +L R+L   GEE+ A RIA A++  R+  PF T+ 
Sbjct: 136 APLDMRMNDEDGLTAADVLNTYSHGELARVLSEYGEERFAGRIASAVIAEREKEPFTTSA 195

Query: 190 DLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L +L+ + +   ++    HPA R+FQALRI VN+E++ +   + +A  A + GG + V+
Sbjct: 196 RLVALLYQAIPAATRRTGGHPAKRTFQALRIEVNHELDAIRAAVPAALDATRVGGRVAVM 255

Query: 249 SFHSLEDRLVKKFFASR----SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           S+ SLEDR++K+ FA+R    S + + V   +P  A    F+ IT+    P   +    R
Sbjct: 256 SYQSLEDRIIKREFATRTTSTSPRGLPVE--LPGTA--PRFRLITRGAERPDAAE--LER 309

Query: 305 RSRSAKLRAGMRTVERSIED 324
             RSA +R  +R +ER   D
Sbjct: 310 NPRSAPVR--VRVIERVAAD 327


>gi|134302412|ref|YP_001122382.1| S-adenosyl-methyltransferase MraW [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|263447543|sp|A4IZB0|RSMH_FRATW RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|134050189|gb|ABO47260.1| S-adenosyl-methyltransferase MraW [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 299

 Score =  186 bits (472), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 118/302 (39%), Positives = 180/302 (59%), Gaps = 22/302 (7%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQETMRDYK 82
           +++ I  LN  P  + +DATFG GG+S++         +IA D+D  A+S  +E      
Sbjct: 1   MQESINDLNINPQGIYIDATFGRGGHSKAILNRLTTGRLIAFDKDLDAISYARENF---- 56

Query: 83  EQFSLFQ---ATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
            QFS F+   A+F+ + DY         +DG++ DLGVSS Q+D   RGFSF  +GPLDM
Sbjct: 57  -QFSNFEIVHASFASIYDYCLQHSLLGKIDGIIMDLGVSSPQLDNAARGFSFTHNGPLDM 115

Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTTQDLSS 193
           RM  S GI+AS  + + +V DL+ I  + GEE+ A +IA  I    +Q+   +TT +L+ 
Sbjct: 116 RMDVSKGITASQALEELSVDDLSYIFKVYGEERFAKKIALRIKDYIQQNGSIRTTLELAE 175

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           LI+ T+   K  + +PATR FQALRI+VNNE+++L   L +    +K+GG + V+SFHSL
Sbjct: 176 LIRATI--GKKEKKNPATRCFQALRIYVNNELKDLEALLENILAVIKSGGRIAVISFHSL 233

Query: 254 EDRLVKKFFASR---SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           EDR+VK+ F++      ++  +  M+P ++     + ITKK     ++++  N RSRSA 
Sbjct: 234 EDRIVKQKFSALINPKQELNRITKMLPQDSSQIKLKWITKK-SKANEDELNQNVRSRSAI 292

Query: 311 LR 312
           LR
Sbjct: 293 LR 294


>gi|49186768|ref|YP_030020.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. Sterne]
 gi|49180695|gb|AAT56071.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. Sterne]
          Length = 310

 Score =  186 bits (471), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 113/304 (37%), Positives = 173/304 (56%), Gaps = 11/304 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
           +HV VLL++ +  L+  P    +D T G GG+S         G  +IA D+D  A+   +
Sbjct: 3   NHVTVLLKETVDGLDIKPDGTYVDCTLGGGGHSSYLLSQLTEGGRLIAFDQDEIAIQNAK 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E    Y EQF   ++ F  L + + + G   VDG++FDLGVSS Q+D  +RGFS+    P
Sbjct: 63  EKFSSYGEQFITVKSNFRYLSEKLQELGITEVDGILFDLGVSSPQLDTPERGFSYHHDAP 122

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM     ++A D VN  + + L RI    GEEK + +IA  I   R++   +TT +L
Sbjct: 123 LDMRMDQDAPLTAYDAVNSWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTGEL 182

Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             LI++ +   ++    HPA R FQA+RI VN+E++   + L SA + +K GG + V++F
Sbjct: 183 VELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRVSVITF 242

Query: 251 HSLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+ K  F   S + ++     +IP    P + + IT+K ++P+  ++  N R+RS
Sbjct: 243 HSLEDRICKTTFKRNSTTPQLPPGLPIIPDEFKPKL-KLITRKPILPSDIELEENNRARS 301

Query: 309 AKLR 312
           AKLR
Sbjct: 302 AKLR 305


>gi|317483063|ref|ZP_07942064.1| MraW methylase [Bifidobacterium sp. 12_1_47BFAA]
 gi|291516661|emb|CBK70277.1| S-adenosyl-methyltransferase MraW [Bifidobacterium longum subsp.
           longum F8]
 gi|316915469|gb|EFV36890.1| MraW methylase [Bifidobacterium sp. 12_1_47BFAA]
          Length = 359

 Score =  186 bits (471), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 120/306 (39%), Positives = 167/306 (54%), Gaps = 13/306 (4%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74
           H+PVLL+  + L+ PA      + +D T G  G+S +F K    + +I +DRD  A+   
Sbjct: 8   HLPVLLDDCVNLMAPALEHENAIAVDCTLGLAGHSIAFLKAAPQARLIGIDRDSEALGLA 67

Query: 75  QETMR--DYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK 129
            E M      ++F    A F QL   + D+    VD V  DLG+SS+QID  DRGFS+  
Sbjct: 68  TERMEREGLADRFIPVHAAFDQLDQVLADQDIERVDAVFMDLGLSSLQIDETDRGFSYSH 127

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM  S  ++A  ++   +  +L RI    GEE+ + +IA AIV RR   PF TT
Sbjct: 128 DAPLDMRMDVSQPLTAERILATYDAAELVRIFKEYGEERFSRQIARAIVARRDKEPFTTT 187

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ L+ + V  +     +PA R FQALRI VN E+++LA  L  A   L  GG L+V 
Sbjct: 188 AQLNRLVDEVVPQAHRPAGNPAKRVFQALRIEVNGELDKLASTLPQAANRLHVGGRLVVE 247

Query: 249 SFHSLEDRLVKKFFA-SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           S+HSLED+ VK F A      V A   +IP +A P  F  +T+  V   + ++A N RS 
Sbjct: 248 SYHSLEDKTVKSFMAQGLRVDVPAGLPVIPPDAQP-FFTDLTRGAVKADEHEIAANPRSA 306

Query: 308 SAKLRA 313
           S +LRA
Sbjct: 307 SVRLRA 312


>gi|325205481|gb|ADZ00934.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis
           M04-240196]
          Length = 328

 Score =  186 bits (471), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 117/306 (38%), Positives = 172/306 (56%), Gaps = 10/306 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMG--SNVIALDRDPFAVSCGQE 76
           H+ VLL + +  L      V +D TFG GG+SR    ++G    +I  D+DP A++  +E
Sbjct: 9   HITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFDKDPQAIAVAEE 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             R  K +  +    F+  Q  +   G   VDG +FDLG+SS QID G RGFSF+   PL
Sbjct: 69  LARSDK-RVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGSRGFSFRFDAPL 127

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  + G+SA++ +  A+ +DL  ++   GEE+ + +IA AIV +R  +P  TT+ L+
Sbjct: 128 DMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRAESPIDTTRKLA 187

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            ++ + V   +  +  PATR+FQA+RIF+N E+EE+   L      LK GG L V++FHS
Sbjct: 188 QIVAQNVRTRERGQ-DPATRTFQAIRIFINRELEEVGAVLPQVMCRLKEGGRLAVIAFHS 246

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK+F    S      R      A  P     I  + + P + ++A N R+RSA L
Sbjct: 247 LEDRIVKQFVKKYSQHAPLPRWAAVREADLPEPPLKIVGRALKPGEAEIAANPRARSAVL 306

Query: 312 RAGMRT 317
           R   RT
Sbjct: 307 RVAERT 312


>gi|313667806|ref|YP_004048090.1| s-adenosyl-l-methionine-dependent methyltransferase MraW [Neisseria
           lactamica ST-640]
 gi|313005268|emb|CBN86701.1| s-adenosyl-l-methionine-dependent methyltransferase MraW (ec
           2.1.1.-) [Neisseria lactamica 020-06]
          Length = 319

 Score =  186 bits (471), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 122/306 (39%), Positives = 170/306 (55%), Gaps = 10/306 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMG--SNVIALDRDPFAVSCGQE 76
           H+ VLL + +  L      V +D TFG GG+SR    ++G    ++  D+DP AV+  +E
Sbjct: 9   HITVLLHEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLVVFDKDPRAVAAAEE 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             R  K + S+    F+  Q  + D G   VDG +FDLGVSS QID   RGFSF+   PL
Sbjct: 69  LARSDK-RVSVVHGGFASFQTALDDLGIGDVDGALFDLGVSSPQIDDAARGFSFRFDAPL 127

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  + G+SA++ +  A+ +DL  ++   GEE+ + +IA AIV +R   P  TT+ L+
Sbjct: 128 DMRMDTTRGMSAAEWIASASEQDLHEVIKNYGEERFSRQIARAIVAQRAENPIDTTRKLA 187

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            L  + V   +  +  PATR+FQA+RIF+N E+EE+   L      LK GG L V++FHS
Sbjct: 188 QLAAQNVRTRECGQ-DPATRTFQAVRIFINRELEEVEAVLPQVMCRLKQGGRLAVIAFHS 246

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK+F    S      R      A  P     I  K + P   +VA N R+RSA L
Sbjct: 247 LEDRIVKQFVGKYSRHAPLPRWAAVREADLPEPPLKIVGKALKPGGAEVAANPRARSAVL 306

Query: 312 RAGMRT 317
           R   RT
Sbjct: 307 RVAERT 312


>gi|302185277|ref|ZP_07261950.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv.
           syringae 642]
          Length = 313

 Score =  186 bits (471), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 119/307 (38%), Positives = 177/307 (57%), Gaps = 20/307 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H+ VLLE+ +  L        LD TFG GG+SR    ++G +  ++  D+DP A++ GQ 
Sbjct: 7   HITVLLEEAVEALAVRADGCYLDGTFGRGGHSRLILSQLGPDGRLLGFDKDPQAIATGQ- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            +     +F + Q +F++L     ++G    V G++ DLGVSS Q+D  +RGFSF   GP
Sbjct: 66  ALAAEDGRFVIVQRSFAELGSEAQERGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDGP 125

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G+SA+  +  A  +++ R+    GEE+ A R+A+A+V RR+  PF+ T DL
Sbjct: 126 LDMRMDPTRGVSAAQFIATAPAEEIARVFKEYGEERFAKRMANAVVARREVQPFERTADL 185

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++ K    +     +PATR+FQ LRI VNNE+ +L  GL +A  AL+ GG L+V+SFH
Sbjct: 186 AEVL-KVANPAWEKGKNPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLVVISFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA------FNRR 305
           SLEDR+V K F  +  K  A    +P N  P  F+    K+ +  +   A       N R
Sbjct: 245 SLEDRIV-KLFMRKLAKGEA--DNMPRNL-PIQFKPFEPKIKIHGKAQFASDVETKANPR 300

Query: 306 SRSAKLR 312
           SRSA +R
Sbjct: 301 SRSAVMR 307


>gi|288574844|ref|ZP_06393201.1| S-adenosyl-methyltransferase MraW [Dethiosulfovibrio peptidovorans
           DSM 11002]
 gi|288570585|gb|EFC92142.1| S-adenosyl-methyltransferase MraW [Dethiosulfovibrio peptidovorans
           DSM 11002]
          Length = 332

 Score =  186 bits (471), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 125/306 (40%), Positives = 180/306 (58%), Gaps = 25/306 (8%)

Query: 19  DHVPVLLEKVIALLNP-APGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQ 75
           +HVPV+LE+V+  L        I+DAT G GGYS +      G NV  +DRDP A++   
Sbjct: 4   EHVPVMLEEVLEYLKKTGSSGPIVDATLGLGGYSEAILARIEGVNVFGIDRDPQALTMAS 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E +  + ++F   +  FS L+  + D     V GVVFDLGVS+MQI   +RGFSF+++GP
Sbjct: 64  ERLSPFGKRFIPIKGNFSDLKGLLEDIDGIPVGGVVFDLGVSNMQISLPERGFSFRENGP 123

Query: 133 LDMRMSCS--GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK-RRQSAPFQTTQ 189
           LDMRM+    G SA+D+V +    +L+ I    GEE+ A  IA +IV+ R +S P + T 
Sbjct: 124 LDMRMNHEDGGESAADMVRELTAPELSEIFRKYGEERFAWPIAKSIVRYREKSGPIEDTD 183

Query: 190 DLSSLIQKTVY--FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            L  +I+K +     +  + HPA + FQALRI VN E++ L +GL SA + +  GG+++V
Sbjct: 184 TLVEVIRKALPAPVMRKAKGHPARKVFQALRIAVNKEMDALDEGLNSALEVISPGGVVVV 243

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           VS+HSLEDR+VK  F  R  K      +            +TKK +VP+  ++  N +SR
Sbjct: 244 VSYHSLEDRIVKWKF--RGWKDQGEGTI------------LTKKALVPSDLEIENNTKSR 289

Query: 308 SAKLRA 313
           SAKLRA
Sbjct: 290 SAKLRA 295


>gi|17547571|ref|NP_520973.1| S-adenosyl-methyltransferase MraW [Ralstonia solanacearum GMI1000]
 gi|20138981|sp|Q8XVH9|RSMH_RALSO RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|17429875|emb|CAD16559.1| putative s-adenosyl-methyltransferase mraw protein [Ralstonia
           solanacearum GMI1000]
          Length = 319

 Score =  186 bits (471), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 123/313 (39%), Positives = 182/313 (58%), Gaps = 21/313 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VL ++ I  L      + +D TFG GG+SR   +    G  +IA D+DP A++    
Sbjct: 11  HQTVLRDEAIDALLWRDDGIYIDGTFGRGGHSRLILERLGPGGRLIAFDKDPAAITEAG- 69

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           T+ D +  F++   +F+ L   +  +G   V GV+ DLG+SS QID G RGFSF+  GPL
Sbjct: 70  TVEDAR--FAIEHDSFAHLDAALDARGIGRVAGVLLDLGISSPQIDEGARGFSFRMDGPL 127

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTT 188
           DMRM  + GI+A+  + +A+ +D+ R++   GEE+ A +IA AIV RR+ +    P   T
Sbjct: 128 DMRMDTTRGITAAQWLAEADERDIARVIRDYGEERFAVQIAKAIVARRRESGTRGPLDRT 187

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L++L+ + V   +  +  PATR+FQALRI VN E+ +L  GL+SA + L+ GG L+V+
Sbjct: 188 SELAALVAQAVKTREKGQ-DPATRTFQALRIHVNQELADLETGLKSAFERLEQGGRLVVI 246

Query: 249 SFHSLEDRLVKKF---FASRSGKVMAVRHMIPSNAH--PAVFQSITKKVVVPTQEDVAFN 303
           SFHSLEDR+VK+F    A             P  AH  PA    +  + V P++ +V+ N
Sbjct: 247 SFHSLEDRIVKRFMQALARPEQSAAPEMRRAPLRAHELPAPQLRLLGR-VRPSEAEVSAN 305

Query: 304 RRSRSAKLRAGMR 316
            RSRSA +R   R
Sbjct: 306 PRSRSAIMRVAER 318


>gi|320533237|ref|ZP_08033944.1| S-adenosyl-methyltransferase MraW [Actinomyces sp. oral taxon 171
           str. F0337]
 gi|320134542|gb|EFW26783.1| S-adenosyl-methyltransferase MraW [Actinomyces sp. oral taxon 171
           str. F0337]
          Length = 329

 Score =  186 bits (471), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 108/271 (39%), Positives = 163/271 (60%), Gaps = 24/271 (8%)

Query: 17  IGDHVPVLLEKVIALLNPA------------PGK-VILDATFGAGGYSRSFCKM--GSNV 61
           +G H PVLLE+ + LL PA            P + V++D T G GG++ +  +      V
Sbjct: 14  VGRHQPVLLERCLDLLAPAIEGHADSTSTGGPARPVMIDCTLGMGGHTEAALERFPALKV 73

Query: 62  IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYV------PDKGVDGVVFDLGVSS 115
           + +DRDP A++     +  + ++F   QAT+  +           +  VD V+ DLGVSS
Sbjct: 74  VGIDRDPEAIALASARLARFGDRFIAVQATYDAVNRVAREHSARAEGAVDAVLMDLGVSS 133

Query: 116 MQIDCGDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAH 174
           +Q+D   RGFS+ +  PLDMRM   SG++A D++  A+  +L+RIL   GEE+ ASRIA 
Sbjct: 134 LQLDEASRGFSYARPAPLDMRMDQGSGMTAQDLLETADAVELSRILRTYGEERFASRIAA 193

Query: 175 AIVKRRQSA-PFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGL 232
           AIV+RRQ+  P  +TQDL+ L+++ V   ++ +  HPA R+FQALRI VN E++ L + +
Sbjct: 194 AIVRRRQAGEPVVSTQDLAELVRQAVPAPARRSGGHPAKRTFQALRIAVNAELDVLERAV 253

Query: 233 RSAEKALKAGGLLIVVSFHSLEDRLVKKFFA 263
             A  +L+ GG L+V S+ SLEDR+VK+  A
Sbjct: 254 PRALNSLRVGGRLVVESYQSLEDRIVKRALA 284


>gi|315918163|ref|ZP_07914403.1| S-adenosyl-methyltransferase mraW [Fusobacterium gonidiaformans
           ATCC 25563]
 gi|313692038|gb|EFS28873.1| S-adenosyl-methyltransferase mraW [Fusobacterium gonidiaformans
           ATCC 25563]
          Length = 318

 Score =  186 bits (471), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 113/311 (36%), Positives = 180/311 (57%), Gaps = 22/311 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+PVL E+ +  L   P  + +D T G G +S    K  S    +I++D+D  A++  ++
Sbjct: 14  HIPVLYEETLDQLVWNPDGIYIDCTLGGGSHSEGILKRLSEKGRLISIDQDANAIAFCKK 73

Query: 77  TMRDYKEQFSLFQATFSQLQ--DYVP--DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            +  + +Q+S+FQ  F  +    Y+   DK VDG++ D+GVSS Q+D G+RGFS++    
Sbjct: 74  RLEKHGKQWSVFQNNFENIDIVSYLAGVDK-VDGILMDIGVSSTQLDDGERGFSYRYDAK 132

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+    +SA +VVN    +DL RIL   GEE+ A +IA  I + R+  P +TT +L
Sbjct: 133 LDMRMNKEQDLSAYEVVNTYAEQDLVRILFEYGEERHAKKIASFICENRKEKPIETTGEL 192

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            ++I++   +S+    HPA ++FQA+RI VN E+E L + ++ +   LK  G L +++FH
Sbjct: 193 VAIIKRA--YSERASKHPAKKTFQAIRIEVNRELEVLEKAIQKSVDLLKPKGHLAIITFH 250

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSN------AHPAVFQSITKKVVVPTQEDVAFNRR 305
           SLEDRLVK  F     K +A     P           A  + +TKK ++P+++++  N R
Sbjct: 251 SLEDRLVKTVF-----KDLATACKCPPELPVCVCGGKAKVKILTKKPIIPSEDELGKNNR 305

Query: 306 SRSAKLRAGMR 316
           + S+KLR   R
Sbjct: 306 AHSSKLRVVER 316


>gi|170755383|ref|YP_001781092.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum B1 str.
           Okra]
 gi|263446089|sp|B1IKR0|RSMH_CLOBK RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|169120595|gb|ACA44431.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum B1 str.
           Okra]
          Length = 309

 Score =  186 bits (471), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 116/302 (38%), Positives = 168/302 (55%), Gaps = 9/302 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+ VLLE+ I  LN     V +D T G GG+S+   K  S+   +I +D+D  A+   +E
Sbjct: 5   HISVLLEETIDSLNIKEDGVYVDCTLGGGGHSKEILKKLSHKGKLIGIDQDTSAIKAAKE 64

Query: 77  TMRDYKEQFSL---FQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++DY+    +   F    S L++   DK VDG++ DLGVSS Q+D   RGFS+ K  PL
Sbjct: 65  KLKDYENIIYVHNNFYNIDSILEELDIDK-VDGIIMDLGVSSYQLDEASRGFSYMKDAPL 123

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+    +SA  V+N    ++L +IL   GEEK + +IA  IV++R   P +TT +L 
Sbjct: 124 DMRMNREENLSAYGVINNYEEEELFKILKNYGEEKFSRKIARFIVEKRTENPIETTGELV 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I+K +        HPA R+FQA+RI VN E++ L + +  +   L   G L +++FHS
Sbjct: 184 EIIRKAIPAKFQREGHPAKRTFQAIRIEVNKELQILNKAIEDSVNRLNKDGRLSIITFHS 243

Query: 253 LEDRLVK-KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK KF              I         + ITKK + P++E+   N RSRSAKL
Sbjct: 244 LEDRIVKVKFKELEKPCTCPPSFPICVCGKEPQIKIITKKPIEPSKEEKEINSRSRSAKL 303

Query: 312 RA 313
           R 
Sbjct: 304 RV 305


>gi|187930165|ref|YP_001900652.1| S-adenosyl-methyltransferase MraW [Ralstonia pickettii 12J]
 gi|262825235|sp|B2UCY5|RSMH_RALPJ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|187727055|gb|ACD28220.1| S-adenosyl-methyltransferase MraW [Ralstonia pickettii 12J]
          Length = 319

 Score =  186 bits (471), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 120/313 (38%), Positives = 182/313 (58%), Gaps = 21/313 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VLL++ +  L      + +D TFG GG+SR   +    G  ++A D+DP A++    
Sbjct: 11  HQTVLLDEAVDALIWRDDGIYIDGTFGRGGHSRRILERLGPGGRLVAFDKDPAAITEAG- 69

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           T+ D +  F++   +F+Q+   +  +GV+   GV+ DLG+SS QID G RGFSF+  GPL
Sbjct: 70  TVEDAR--FAIEHDSFAQMARCLDARGVEQVAGVLLDLGISSPQIDEGARGFSFRMDGPL 127

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR----QSAPFQTT 188
           DMRM  + GI+A+  + +A+ +D+ R++   GEE+ A +IA AIV RR       P   T
Sbjct: 128 DMRMDTTRGITAAQWLAEADERDIARVIRDYGEERFAVQIAKAIVARRGQSGDRGPLDRT 187

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L++L+ + V   +  +  PATR+FQALRI VN E+ +L  GL++A   L+ GG L+V+
Sbjct: 188 SELAALVAQAVKTREKGQ-DPATRTFQALRIHVNQELADLETGLKAAFDRLEQGGRLVVI 246

Query: 249 SFHSLEDRLVKKF---FASRSGKVMAVRHMIPSNAH--PAVFQSITKKVVVPTQEDVAFN 303
           SFHSLEDR+VK+F    A             P  AH  PA    +  + V P++ +V+ N
Sbjct: 247 SFHSLEDRIVKRFMQALARPEQSAAPELRRAPLRAHELPAPQLRLLGR-VKPSEAEVSAN 305

Query: 304 RRSRSAKLRAGMR 316
            R+RSA +R   R
Sbjct: 306 PRARSAIMRVAER 318


>gi|254426992|ref|ZP_05040699.1| S-adenosyl-methyltransferase MraW [Alcanivorax sp. DG881]
 gi|196193161|gb|EDX88120.1| S-adenosyl-methyltransferase MraW [Alcanivorax sp. DG881]
          Length = 312

 Score =  186 bits (471), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 115/301 (38%), Positives = 171/301 (56%), Gaps = 10/301 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF-CKMGSN--VIALDRDPFAVSCGQ 75
           +H PV+LE+V+ +         +D TFG GG+SR+   ++  N  +  +DRDP A++ GQ
Sbjct: 9   EHQPVMLEEVLDMWFSQSEGFYVDGTFGRGGHSRALLARLDDNGRLAGIDRDPQAIAAGQ 68

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           E +     +F +    F  L   V   G  +DG++ DLGVSS Q+D   RGFSF + GPL
Sbjct: 69  E-LAASDSRFHMVANRFDCLPQVVEQAGRPIDGLLLDLGVSSPQLDDAARGFSFLRDGPL 127

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM    G S ++ ++ A  KD+  +L   GEE+++  IA  I   R+  P   T  L+
Sbjct: 128 DMRMDPTQGESVAEWLSHAAEKDIANVLYRYGEERKSRWIAKRICDTRKEQPITRTLQLA 187

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +LI+  +  ++  + HPATRSFQALRI +N E++ L Q L  + + L  GG L ++SFHS
Sbjct: 188 NLIESVLGRNEQGK-HPATRSFQALRIHINGELDALNQVLEQSLETLAIGGRLAIISFHS 246

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK F    SG+    R  +P  N  P   + + K +   ++ ++  N RSRSA L
Sbjct: 247 LEDRIVKLFIRDHSGRAPKGRGGLPLGNEMPQRLEPVGKAMRA-SKAELKVNVRSRSAVL 305

Query: 312 R 312
           R
Sbjct: 306 R 306


>gi|332295500|ref|YP_004437423.1| Ribosomal RNA small subunit methyltransferase H [Thermodesulfobium
           narugense DSM 14796]
 gi|332178603|gb|AEE14292.1| Ribosomal RNA small subunit methyltransferase H [Thermodesulfobium
           narugense DSM 14796]
          Length = 298

 Score =  186 bits (471), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 114/306 (37%), Positives = 168/306 (54%), Gaps = 34/306 (11%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H+PVLL +V+   N APGKV++D T GAGG+S +F K    G  ++  D+D  AV    E
Sbjct: 9   HIPVLLNEVLENSNLAPGKVVVDGTIGAGGHSFNFLKKILPGGFLLGFDKDIEAVKLAVE 68

Query: 77  TMRDY--KEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +     +  F++F   F     Y+   P    D    DLG+S+MQI   +RGFSF K  
Sbjct: 69  KLSSTFDRNSFTIFNDKFENFVKYLNFLPYGKFDLFFLDLGLSTMQIKESNRGFSFMKDE 128

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM     ++ASD +N A+ +++  +    GEE ++ ++A  I  RR+  PF++T D
Sbjct: 129 KLDMRMDLKEKMTASDWLNSASEEEMEEVFRKYGEEPKSRKLAKMISLRRREKPFESTMD 188

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ L++K   +    R HPATR FQA+RI +N+EIE L   LR A   + + G +IV+SF
Sbjct: 189 LAQLVKKIYPYG---RRHPATRIFQAIRIVINDEIEHLEATLREATNHINSLGRIIVISF 245

Query: 251 HSLEDRLVKKFFASRS----GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           HS EDR+VK  F +      G+V                  ITKK ++ ++ +   N  +
Sbjct: 246 HSGEDRVVKWTFKNLEKEGRGRV------------------ITKKPIIASESETKENPSA 287

Query: 307 RSAKLR 312
           RSAK+R
Sbjct: 288 RSAKMR 293


>gi|205373089|ref|ZP_03225894.1| S-adenosyl-methyltransferase MraW [Bacillus coahuilensis m4-4]
          Length = 311

 Score =  186 bits (471), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 108/309 (34%), Positives = 171/309 (55%), Gaps = 11/309 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
           +H  VLL + +  L   P  + +D T G  G+S         G ++ A D+D  A+    
Sbjct: 3   NHTTVLLRETVDELKIKPNGIYVDCTLGGAGHSEYLLSQLGEGGHLFAFDQDETALRHAA 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E +  Y ++ +  ++ F  L+  + +    GVDG+++DLGVSS Q+D  +RGFS+    P
Sbjct: 63  EKLNAYSDKVTYVKSNFRYLKSELTNLGVMGVDGILYDLGVSSPQLDTPERGFSYHHDAP 122

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM   G +SA +VVN+ + + L RI    GEEK + +IA  I   R+  P +TT +L
Sbjct: 123 LDMRMDLQGAVSAYEVVNEWSYEKLVRIFFQYGEEKFSKQIARKIEAAREVNPIETTGEL 182

Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             LI++ +   ++    HPA R FQA+RI VN+E+       +   + L  GG + V++F
Sbjct: 183 VELIKEGIPAPARRKGGHPAKRIFQAIRIAVNDELTAFEDSAKDGIQLLHKGGRMSVITF 242

Query: 251 HSLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+ K  F   S+  ++     +IP    P + + +T+K ++P+ E++A N RSRS
Sbjct: 243 HSLEDRICKNLFKEYSKGPELPPGLPIIPEGYEPKL-KIVTRKPILPSDEELAHNNRSRS 301

Query: 309 AKLRAGMRT 317
           AKLR   + 
Sbjct: 302 AKLRVAEKN 310


>gi|167772169|ref|ZP_02444222.1| hypothetical protein ANACOL_03544 [Anaerotruncus colihominis DSM
           17241]
 gi|167665967|gb|EDS10097.1| hypothetical protein ANACOL_03544 [Anaerotruncus colihominis DSM
           17241]
          Length = 311

 Score =  186 bits (471), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 115/300 (38%), Positives = 175/300 (58%), Gaps = 8/300 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77
           HVPVLL+  +  LN  P  + +D T G  G+SR+  +   G  +IALD+DP AV+     
Sbjct: 8   HVPVLLDACLEGLNIRPDGIYVDGTAGGAGHSRAIAERLDGGRLIALDKDPDAVAVASSR 67

Query: 78  MRDYKEQFSLFQATFSQL---QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +  +    ++ Q+ FS+L    D +  + VDG++ DLGVSS Q+D  +RGFS+    PLD
Sbjct: 68  LAPFGCA-TVVQSDFSELCTVLDKLGIEAVDGILLDLGVSSYQLDTPERGFSYAHDAPLD 126

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRM+ +G+SA DVVN  + KDL R+    GEEK A  IA  I+K R   P  TT +L+++
Sbjct: 127 MRMTKTGLSARDVVNTYSFKDLCRVFRDYGEEKFAPAIAKNILKSRTQRPIATTAELAAI 186

Query: 195 IQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           I  ++   ++    +PA R FQA+RI VN E+  L+  L  A + L+ GG + +++FHSL
Sbjct: 187 IGASIPARARREGGNPAKRVFQAIRIEVNGELSSLSVFLGEAFERLRIGGRMAIITFHSL 246

Query: 254 EDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           EDR+VK+ FA+   G        +    +    + + +K +   + ++A N RS+SAKLR
Sbjct: 247 EDRMVKQRFAALCRGCTCPPDFPVCICGNQPRGRLLNRKPIEAGERELAANSRSKSAKLR 306


>gi|170759536|ref|YP_001786877.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum A3 str.
           Loch Maree]
 gi|263446098|sp|B1L164|RSMH_CLOBM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|169406525|gb|ACA54936.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 309

 Score =  186 bits (471), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 117/302 (38%), Positives = 167/302 (55%), Gaps = 9/302 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+ VLLE+ I  LN     V +D T G GG+S+   K  S+   +I +D+D  A+   +E
Sbjct: 5   HISVLLEETIDSLNIKEDGVYVDCTLGGGGHSKEILKKLSHKGKLIGIDQDTSAIKAAKE 64

Query: 77  TMRDYKEQFSL---FQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++DY+    +   F    S L++   DK VDG++ DLGVSS Q+D   RGFS+ K  PL
Sbjct: 65  RLKDYENVIYVHNNFYNIDSILEELDIDK-VDGIIMDLGVSSYQLDEASRGFSYMKDAPL 123

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+     SA +VVN    ++L RI    GEEK + +IA  IV++R   P +TT +L 
Sbjct: 124 DMRMNREENFSAYNVVNSYEEEELFRIFKNYGEEKFSRKIARFIVEKRTENPIETTGELV 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I+K +        HPA R+FQA+RI VN E++ L + +  +   L   G L +++FHS
Sbjct: 184 EIIRKAIPAKFQREGHPAKRTFQAIRIEVNKELQILNKAIEDSVNRLNKDGRLSIITFHS 243

Query: 253 LEDRLVK-KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK KF              I         + ITKK + P++E+   N RSRSAKL
Sbjct: 244 LEDRIVKVKFKELEKPCTCPPSFPICVCGKEPQIKIITKKPIEPSKEEKEINSRSRSAKL 303

Query: 312 RA 313
           R 
Sbjct: 304 RV 305


>gi|197116881|ref|YP_002137308.1| S-adenosyl-methyltransferase MraW [Geobacter bemidjiensis Bem]
 gi|263447558|sp|B5EBP3|RSMH_GEOBB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|197086241|gb|ACH37512.1| SAM-dependent membrane protein methyltransferase MraW [Geobacter
           bemidjiensis Bem]
          Length = 312

 Score =  186 bits (471), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 120/302 (39%), Positives = 173/302 (57%), Gaps = 9/302 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H+ VL ++V+  L+P  G V +D T G  G++       +    +I  DRD  A++  +E
Sbjct: 6   HISVLPDEVLQALSPRSGGVYVDGTLGGAGHAGLILTASAPDGQLIGFDRDEEAIAVARE 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++ +  +  +    F+ +   + + GVDG+   V DLGVSS Q+D  +RGFSF    PL
Sbjct: 66  RLQVFGGRVRIIHRNFAGIAQALAEIGVDGIDGFVLDLGVSSHQLDRDERGFSFMHDAPL 125

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM   SG SA+D+VN     +L RI+   GEE+ A R+A  IVK R   P +TT  L 
Sbjct: 126 DMRMDRSSGQSAADLVNTLPEGELYRIISEYGEERWAKRVASFIVKARDERPIETTLQLV 185

Query: 193 SLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+ ++  +K   R+HPATR+FQALRI VN E++ L +GL      LK GG   V+SFH
Sbjct: 186 DVIKGSIPKAKWEERLHPATRTFQALRIAVNEELKSLEEGLEGLLSLLKQGGRGAVISFH 245

Query: 252 SLEDRLVKKFF-ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK+ F A+ +G        I        F+ +T+K +   + +VA N RSRSAK
Sbjct: 246 SLEDRIVKEGFRAAATGCTCPKELPICICGRVPRFKLVTRKPITAGEAEVAANPRSRSAK 305

Query: 311 LR 312
           LR
Sbjct: 306 LR 307


>gi|289423186|ref|ZP_06425001.1| S-adenosyl-methyltransferase MraW [Peptostreptococcus anaerobius
           653-L]
 gi|289156517|gb|EFD05167.1| S-adenosyl-methyltransferase MraW [Peptostreptococcus anaerobius
           653-L]
          Length = 311

 Score =  186 bits (471), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 114/313 (36%), Positives = 181/313 (57%), Gaps = 23/313 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76
           HV VLL++ I  LN  P    +D T G  G+S+   K +G N  +I  D+D  A++  +E
Sbjct: 5   HVSVLLDECIDNLNINPDGTYVDCTMGGAGHSKEIAKRLGENGRLICFDQDINAINVAKE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + ++K++  L  + F  +++ + ++ +D   GV+ DLGVSS Q+D   RGFS+     L
Sbjct: 65  RLAEFKDRVILVHSNFENIKEELLERNIDSIDGVLADLGVSSHQLDEAFRGFSYMNDASL 124

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM   + +SA DVVN  + +DL RI+   GEE  ASRIA  IV+ R+     TT +L 
Sbjct: 125 DMRMDDRNSMSAWDVVNTYSQEDLHRIIKDYGEENWASRIAQFIVEERKEKDINTTFELV 184

Query: 193 SLIQKTVYFSKNNRI---HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            +I+K +   K  RI   HPA R+FQA+RI VNNE+  + + +  +   +  GG + +++
Sbjct: 185 DIIKKAI--PKKARIDGPHPAKRTFQAIRIEVNNELGVIKKMIDDSVSMMNPGGRICIIT 242

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIP------SNAHPAVFQSITKKVVVPTQEDVAFN 303
           FHSLEDR+VK  +     K +++  + P      S    +  + IT+K ++P+++++  N
Sbjct: 243 FHSLEDRIVKNEY-----KYLSLDCICPPELPFCSCDKVSEVKIITRKPILPSKQEIEVN 297

Query: 304 RRSRSAKLRAGMR 316
            RSRSAKLR   +
Sbjct: 298 PRSRSAKLRVAEK 310


>gi|167636587|ref|ZP_02394881.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0442]
 gi|170688833|ref|ZP_02880036.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0465]
 gi|254683371|ref|ZP_05147231.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str.
           CNEVA-9066]
 gi|254743854|ref|ZP_05201537.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. Kruger
           B]
 gi|167528010|gb|EDR90816.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0442]
 gi|170667188|gb|EDT17948.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0465]
          Length = 310

 Score =  186 bits (471), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 113/304 (37%), Positives = 173/304 (56%), Gaps = 11/304 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
           +HV VLL++ +  L+  P    +D T G GG+S         G  +IA D+D  A+   +
Sbjct: 3   NHVTVLLKETVDGLDIKPDGTYVDCTLGGGGHSSYLLSQLTEGGRLIAFDQDEIAIQNAK 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E    Y EQF   ++ F  L + + + G   VDG++FDLGVSS Q+D  +RGFS+    P
Sbjct: 63  EKFSSYGEQFITVKSNFRYLSEKLQELGITEVDGILFDLGVSSPQLDTPERGFSYHHDAP 122

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM     ++A DVVN  + + L RI    GEEK + +IA  I   R++   +TT +L
Sbjct: 123 LDMRMDQDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTGEL 182

Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             LI++ +   ++    HPA R FQA+RI VN+E++   + L SA + +K GG + V++F
Sbjct: 183 VELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRVSVITF 242

Query: 251 HSLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+ K  F   S + ++     + P    P + + IT+K ++P+  ++  N R+RS
Sbjct: 243 HSLEDRICKTTFKRNSTTPQLPPGLPITPDEFKPKL-KLITRKPILPSDIELEENNRARS 301

Query: 309 AKLR 312
           AKLR
Sbjct: 302 AKLR 305


>gi|310779075|ref|YP_003967408.1| S-adenosyl-methyltransferase MraW [Ilyobacter polytropus DSM 2926]
 gi|309748398|gb|ADO83060.1| S-adenosyl-methyltransferase MraW [Ilyobacter polytropus DSM 2926]
          Length = 314

 Score =  186 bits (471), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 115/306 (37%), Positives = 175/306 (57%), Gaps = 20/306 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+PVL  + I  L    G V LD T G GG+S    K  S    +I++D+D  A+    E
Sbjct: 10  HIPVLYRETIENLVKNEGGVYLDCTLGGGGHSEGILKALSEKGKLISIDQDQQALDFAGE 69

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  Y +++  ++  F  L   +   G   +DG++ D+GVSS Q+D  +RGFS++    L
Sbjct: 70  RLGKYGKKWESYKDNFENLDTVLYLAGYDKIDGILMDIGVSSTQLDDPERGFSYRFDTKL 129

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+ +  +SA +VVNQ     L++I+   GEE+ A +IA  I + R   P +TT DL 
Sbjct: 130 DMRMNKNAKVSAYEVVNQYEEGRLSKIIYDYGEERHARKIARLICEIRAEKPIETTGDLV 189

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I K  Y  K+ + HPA ++FQA+RI VN E++ L + +  A  ALK GG L +++FHS
Sbjct: 190 EII-KRAYKGKSPK-HPAMKTFQAIRIEVNRELDVLERSIDKAINALKPGGRLAIITFHS 247

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNA------HPAVFQSITKKVVVPTQEDVAFNRRS 306
           LEDR+VK  F     K M+V  + P         + A  + IT+K + P  +++ FN+R+
Sbjct: 248 LEDRMVKNKF-----KEMSVDCICPPELPVCRCDNKAKVKIITRKPITPKDDELKFNKRA 302

Query: 307 RSAKLR 312
           RS+KLR
Sbjct: 303 RSSKLR 308


>gi|255068190|ref|ZP_05320045.1| S-adenosyl-methyltransferase MraW [Neisseria sicca ATCC 29256]
 gi|255047532|gb|EET42996.1| S-adenosyl-methyltransferase MraW [Neisseria sicca ATCC 29256]
          Length = 317

 Score =  186 bits (471), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 119/309 (38%), Positives = 171/309 (55%), Gaps = 16/309 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQE 76
           H+ VLL + +  L      + +D TFG GG+SR    ++GS   +I  D+DP A+   Q+
Sbjct: 8   HITVLLNEAVDALAVREDGIYVDGTFGRGGHSRLILSRLGSQGRLIVFDKDPQAIEAAQK 67

Query: 77  TMRD------YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
                       ++FS FQ T  +L      + +DG +FDLG+SS QID G RGFSF+  
Sbjct: 68  LAEQDGRVTVVHDRFSSFQTTLDKLDI----EEIDGALFDLGISSPQIDDGARGFSFRFD 123

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM  + G+SA++ +  A+ +DL  ++   GEE+ + +IA AIV +R  +P  TT+
Sbjct: 124 APLDMRMDPTRGMSAAEWIATASEQDLHEVIKNYGEERFSRQIARAIVAQRTESPIDTTR 183

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            L+ L+ + V   +  +  PATR+FQA+RIF+N E+EE+   L      LK GG L V++
Sbjct: 184 KLAQLVAQNVRTRERGQ-DPATRTFQAVRIFINRELEEVEAVLPQVMGRLKQGGRLAVIA 242

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK+F    S      R      A  P        K + P  E+ A N R+RS
Sbjct: 243 FHSLEDRIVKQFVKKYSQHPPLPRWAAVKEADLPLPPLKAVGKAIKPGVEETASNPRARS 302

Query: 309 AKLRAGMRT 317
           A LR   RT
Sbjct: 303 AVLRVAERT 311


>gi|254831717|ref|ZP_05236372.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes 10403S]
          Length = 312

 Score =  186 bits (471), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 106/303 (34%), Positives = 174/303 (57%), Gaps = 11/303 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VLL + + +L   P  + +DAT G  G+S           ++ A D+D  A+   + 
Sbjct: 4   HETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDNAKI 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + DY ++ +  +A F  +++ + ++G   VDG+++DLGVSS Q+D  +RGFS+ +   L
Sbjct: 64  KLADYSDKVTFIKANFRDMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQDAAL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     ++A  VVN+ + +DL RI    GEEK + +IA  I + R+  P +TT +L 
Sbjct: 124 DMRMDQEQELTAKTVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERHREVKPIETTGELV 183

Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  +   ++    HP  R+FQA+RI VN+E+  +   L  A   +K GG + V++FH
Sbjct: 184 DIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLIKPGGRISVITFH 243

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+ K+ F  A++   +     +IP    P  F+  T+K +VP++E++  N R+RSA
Sbjct: 244 SLEDRITKQLFQEATKGPDLPPGLPVIPDEYKPD-FKLATRKPIVPSEEELEQNNRARSA 302

Query: 310 KLR 312
           KLR
Sbjct: 303 KLR 305


>gi|254993138|ref|ZP_05275328.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL
           J2-064]
          Length = 308

 Score =  185 bits (470), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 107/300 (35%), Positives = 173/300 (57%), Gaps = 11/300 (3%)

Query: 23  VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMR 79
           VLL + + +L   P  + +DAT G  G+S           ++ A D+D  A+   +  + 
Sbjct: 3   VLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDNAKIKLA 62

Query: 80  DYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
           DY ++ +  +A F  +++ + ++G   VDG+++DLGVSS Q+D  +RGFS+ +   LDMR
Sbjct: 63  DYSDKVTFIKANFRDMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQDAALDMR 122

Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M     ++A  VVN+ + +DL RI    GEEK + +IA  I +RR+  P +TT +L  +I
Sbjct: 123 MDQEQELTAKIVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTGELVDII 182

Query: 196 QKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           +  +   ++    HP  R+FQA+RI VN+E+  +   L  A   LK GG + V++FHSLE
Sbjct: 183 KTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLLKPGGRISVITFHSLE 242

Query: 255 DRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           DR+ K  F  A++   +     +IP    P  F+  T+K +VP++E++  N R+RSAKLR
Sbjct: 243 DRITKHLFQEATKGPDLPPGLPVIPDEYKPD-FKLATRKPIVPSEEELEQNNRARSAKLR 301


>gi|220912331|ref|YP_002487640.1| S-adenosyl-methyltransferase MraW [Arthrobacter chlorophenolicus
           A6]
 gi|263447791|sp|B8HGW2|RSMH_ARTCA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|219859209|gb|ACL39551.1| S-adenosyl-methyltransferase MraW [Arthrobacter chlorophenolicus
           A6]
          Length = 330

 Score =  185 bits (470), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 114/299 (38%), Positives = 170/299 (56%), Gaps = 15/299 (5%)

Query: 20  HVPVLLEKVIALLNPA------PGK--VILDATFGAGGYSRSFCKMGSNV--IALDRDPF 69
           HVPVL ++ I LL P        GK  +++DAT G GG+S +  +   ++  I +DRD  
Sbjct: 12  HVPVLRDRCINLLAPGFDAARQQGKAPIVIDATLGMGGHSEAMLQRFPDLHLIGIDRDEE 71

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFS 126
           A++   E +  +  +  L  A + ++ + + D GV    G++ DLGVSS+Q+D  +RGF+
Sbjct: 72  ALALAGERLAPFSARTDLVHAVYDEIPEVLADLGVTEISGILMDLGVSSLQLDERERGFA 131

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           +    PLDMRM  S G +A+DVVN  N ++L RI+   GEEK A RIA+ IV  R   PF
Sbjct: 132 YSFDAPLDMRMDTSRGQTAADVVNTYNEEELVRIIRKWGEEKFAGRIANRIVAARGEKPF 191

Query: 186 QTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
            TT +L   I+  V   +  +  HPA R+FQALRI VN E++ L + + +A  AL  GG 
Sbjct: 192 TTTGELVEQIRSVVPAGAAKSGGHPAKRTFQALRIEVNEELDVLERAVPAAVDALAMGGR 251

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
           ++V+S+HSLED++VK     RS     +   +    H    + +TK   VPT  ++A N
Sbjct: 252 IVVMSYHSLEDKIVKSVLQGRSKSSAPLGFPVELEEHKPELKILTKGTEVPTAVEIAEN 310


>gi|318607135|emb|CBY28633.1| rrna small subunit methyltransferase H [Yersinia enterocolitica
           subsp. palearctica Y11]
          Length = 303

 Score =  185 bits (470), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 119/309 (38%), Positives = 179/309 (57%), Gaps = 19/309 (6%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQETMRD 80
           +L++ +  LN     + +D TFG GG+SR    ++G    +IA+DRDP A+   +     
Sbjct: 1   MLDEAVNGLNIRDNGIYIDGTFGRGGHSRLILSQLGPEGCLIAIDRDPQAIKAAKSIT-- 58

Query: 81  YKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
              +FS+    FS L  YV +      ++GV+ DLGVSS Q+D  +RGFSF + GPLDMR
Sbjct: 59  -DPRFSIVHGPFSDLAHYVRELDLVGRINGVLLDLGVSSPQLDDPERGFSFMRDGPLDMR 117

Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M  + GISA++ + +A+  D+  +L   GEE+ A R+A AIV+   + P   T++L+ LI
Sbjct: 118 MDPTRGISAAEWLMKASADDIAWVLKTFGEERFAKRLAKAIVECNLTQPMTRTKELADLI 177

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
                F + ++ HPATRSFQA+RI++N+E+EE+ + L  A + L   G L V+SFHSLED
Sbjct: 178 ANASPFREKHK-HPATRSFQAIRIYINSELEEIERALDGALEVLAPEGRLSVISFHSLED 236

Query: 256 RLVKKFFA--SRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRSRSAK 310
           R+VK F    SR  +V A   +  +          +S+ K  ++P   +VA N R+RS+ 
Sbjct: 237 RIVKNFIRHHSRGPQVPAGLPLTEAQLRSMGGRTLKSVGK--MMPPDAEVAENPRARSSV 294

Query: 311 LRAGMRTVE 319
           LR   R  E
Sbjct: 295 LRFAERIKE 303


>gi|227529006|ref|ZP_03959055.1| S-adenosyl-methyltransferase [Lactobacillus vaginalis ATCC 49540]
 gi|227351018|gb|EEJ41309.1| S-adenosyl-methyltransferase [Lactobacillus vaginalis ATCC 49540]
          Length = 316

 Score =  185 bits (470), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 116/305 (38%), Positives = 176/305 (57%), Gaps = 13/305 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           HV VLL + +A LN  P    +DAT G GG+S +     +   + + D+D  A+   Q+ 
Sbjct: 6   HVTVLLNEAVAGLNIRPDGTYVDATLGGGGHSSAILNQLTTGRLYSFDQDQTAIRYNQQH 65

Query: 78  MRDYKEQFS--LFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           ++ + +     L +  F  L   +   GV   DG+V+DLGVSS Q D   RGFS++   P
Sbjct: 66  LKKFIDDGRSILIEDNFRNLGTALAKNGVKSVDGIVYDLGVSSPQFDDAQRGFSYKLDAP 125

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+    +SA +VVN+   + L +IL   GEE+ A +IA  I +RR+S P +TT +L
Sbjct: 126 LDMRMNQQQALSAMNVVNEWPYEKLVKILYRYGEERFAKQIARKIERRRESKPIKTTFEL 185

Query: 192 SSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I++ +   ++ +  HPA ++FQA+RI VN+E+  L   L  A + L  GG + V++F
Sbjct: 186 VDVIKEAIPAAARRHGGHPAKKTFQAIRIAVNDELGALEDSLEQALELLNVGGRISVITF 245

Query: 251 HSLEDRLVKKFF---ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
            SLEDRLVK  F    S + ++     +IP    P  F+ I KK ++P+QE++A N R+ 
Sbjct: 246 QSLEDRLVKTMFHEKVSLADELPPGLPVIPPEMQPK-FKLINKKPILPSQEELANNHRAH 304

Query: 308 SAKLR 312
           SAKLR
Sbjct: 305 SAKLR 309


>gi|163941658|ref|YP_001646542.1| S-adenosyl-methyltransferase MraW [Bacillus weihenstephanensis
           KBAB4]
 gi|229061524|ref|ZP_04198868.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus AH603]
 gi|229168659|ref|ZP_04296381.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus AH621]
 gi|263447259|sp|A9VU80|RSMH_BACWK RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|163863855|gb|ABY44914.1| S-adenosyl-methyltransferase MraW [Bacillus weihenstephanensis
           KBAB4]
 gi|228614815|gb|EEK71918.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus AH621]
 gi|228717758|gb|EEL69408.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus AH603]
          Length = 310

 Score =  185 bits (470), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 113/303 (37%), Positives = 171/303 (56%), Gaps = 11/303 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HV VLL++ +  L+  P    +D T G GG+S         G  +IA D+D  A+   +E
Sbjct: 4   HVTVLLKETVDGLDIKPSGTYVDCTLGGGGHSSYLLSQLTDGGKLIAFDQDEIAIQNAKE 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
               Y EQF   ++ F  L + + + G   VDG++FDLGVSS Q+D  +RGFS+    PL
Sbjct: 64  KFSSYGEQFVTVKSNFRYLSEKLHELGITEVDGILFDLGVSSPQLDTPERGFSYHHDAPL 123

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     ++A DVVN  + + L RI    GEEK + +I   I   R++   +TT +L 
Sbjct: 124 DMRMDQDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQITRKIEAYRENKAIETTGELV 183

Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            LI++ +   ++    HPA R FQA+RI VN+E++   + L SA   +K GG + V++FH
Sbjct: 184 ELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIDMVKPGGRVSVITFH 243

Query: 252 SLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+ K  F   S + ++     +IP    P + + IT+K ++P+  ++  N R+RSA
Sbjct: 244 SLEDRICKTTFKRNSTTPQLPQGLPIIPDEFKPKL-KLITRKPILPSDIELEENNRARSA 302

Query: 310 KLR 312
           KLR
Sbjct: 303 KLR 305


>gi|148379426|ref|YP_001253967.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum A str.
           ATCC 3502]
 gi|153932097|ref|YP_001383805.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum A str.
           ATCC 19397]
 gi|153935599|ref|YP_001387355.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum A str.
           Hall]
 gi|263446050|sp|A7FTX8|RSMH_CLOB1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446073|sp|A5I1T3|RSMH_CLOBH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|148288910|emb|CAL82997.1| S-adenosyl-methyltransferase [Clostridium botulinum A str. ATCC
           3502]
 gi|152928141|gb|ABS33641.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum A str.
           ATCC 19397]
 gi|152931513|gb|ABS37012.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum A str.
           Hall]
          Length = 309

 Score =  185 bits (470), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 116/302 (38%), Positives = 168/302 (55%), Gaps = 9/302 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+ VLLE+ I  LN     V +D T G GG+S+   K  S+   +I +D+D  A+   +E
Sbjct: 5   HISVLLEETIDSLNIKEDGVYVDCTLGGGGHSKEILKKLSHKGKLIGIDQDTSAIKAAKE 64

Query: 77  TMRDYKEQFSL---FQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++DY+    +   F    S L++   DK VDG++ DLGVSS Q+D   RGFS+ K  PL
Sbjct: 65  RLKDYENVIYVHNNFYNIDSILEELDIDK-VDGIIMDLGVSSYQLDEASRGFSYMKDAPL 123

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+    +SA  V+N    ++L +IL   GEEK + +IA  IV++R   P +TT +L 
Sbjct: 124 DMRMNREENLSAYGVINNYEEEELFKILKNYGEEKFSRKIARFIVEKRTENPIETTGELV 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I+K +        HPA R+FQA+RI VN E++ L + +  +   L   G L +++FHS
Sbjct: 184 EIIRKAIPAKFQREGHPAKRTFQAIRIEVNKELQILNKAIEDSVNRLNKDGRLSIITFHS 243

Query: 253 LEDRLVK-KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK KF              I         + ITKK + P++E+   N RSRSAKL
Sbjct: 244 LEDRIVKVKFKELEKPCTCPPSFPICVCGKEPQIKIITKKPIEPSKEEKEINSRSRSAKL 303

Query: 312 RA 313
           R 
Sbjct: 304 RV 305


>gi|262831557|sp|A9M2I4|RSMH_NEIM0 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 328

 Score =  185 bits (470), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 117/306 (38%), Positives = 172/306 (56%), Gaps = 10/306 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMG--SNVIALDRDPFAVSCGQE 76
           H+ VLL + +  L      V +D TFG GG+SR    ++G    +I  D+DP A++  +E
Sbjct: 9   HITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFDKDPQAIAVAEE 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             R  K +  +    F+  Q  +   G   VDG +FDLG+SS QID G RGFSF+   PL
Sbjct: 69  LARSDK-RVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGSRGFSFRFDAPL 127

Query: 134 DMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM +  G+SA++ +  A+ +DL  ++   GEE+ + +IA AIV +R  +P  TT+ L+
Sbjct: 128 DMRMDTMRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRAESPIDTTRKLA 187

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            ++ + V   +  +  PATR+FQA+RIF+N E+EE+   L      LK GG L V++FHS
Sbjct: 188 QIVAQNVRTRERGQ-DPATRTFQAIRIFINRELEEVGAVLPQVMCRLKEGGRLAVIAFHS 246

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK+F    S      R      A  P     I  + + P + ++A N R+RSA L
Sbjct: 247 LEDRIVKQFVKKYSQHAPLPRWAAVREADLPEPPLKIAGRALKPGEAEIAANPRARSAVL 306

Query: 312 RAGMRT 317
           R   RT
Sbjct: 307 RVAERT 312


>gi|193214541|ref|YP_001995740.1| S-adenosyl-methyltransferase MraW [Chloroherpeton thalassium ATCC
           35110]
 gi|263446020|sp|B3QWS9|RSMH_CHLT3 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|193088018|gb|ACF13293.1| S-adenosyl-methyltransferase MraW [Chloroherpeton thalassium ATCC
           35110]
          Length = 321

 Score =  185 bits (470), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 119/319 (37%), Positives = 175/319 (54%), Gaps = 34/319 (10%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--------GSNVIALDRDPFAV 71
           H PVLLE+ +  L    G  I DAT G  G+S+              S +I +DRD  A+
Sbjct: 6   HKPVLLEESVHWLVSESGMYI-DATLGGAGHSKEILHRLETQHLLSNSLLIGIDRDANAI 64

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG--------VDGVVFDLGVSSMQIDCGDR 123
                 +  Y     + +  F+ L+  +   G        + G++ DLG+SS QID   R
Sbjct: 65  RAATTRLATYAAHAHILRGRFADLKLLLETNGLLDSGNHPIRGILLDLGISSHQIDAPAR 124

Query: 124 GFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GFSFQ+SGPLDMRMS  + ++A++VVN  + + L++I    GEE++A  IA  IV+ R+ 
Sbjct: 125 GFSFQQSGPLDMRMSDTAQLTAAEVVNHYDERSLSKIFFDYGEEREAKWIARKIVEARKQ 184

Query: 183 APFQTTQDLSSLIQKTVYFSKNNRIHPA------TRSFQALRIFVNNEIEELAQGLRSAE 236
            P +TT  L+ LI++ +     NR  P        R FQA+RI VN E++EL   L++A 
Sbjct: 185 TPLETTAALALLIRQNL-----NRKSPVEQTKTLARIFQAIRIEVNGELDELKAVLQAAH 239

Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFF---ASRSGKVMAVRHMIPSNAHPAVFQSITKKVV 293
           + L   G L+V+S+HSLEDR+VK+FF   AS       V   +P     A  + +TKK V
Sbjct: 240 EVLSEKGRLVVISYHSLEDRIVKQFFNECASEDWGPKGVVLDVPIKT--ATMKILTKKPV 297

Query: 294 VPTQEDVAFNRRSRSAKLR 312
           + ++E++  N R+RSAKLR
Sbjct: 298 LASEEEIQENSRARSAKLR 316


>gi|331090606|ref|ZP_08339457.1| ribosomal RNA small subunit methyltransferase H 2 [Lachnospiraceae
           bacterium 2_1_46FAA]
 gi|330401046|gb|EGG80641.1| ribosomal RNA small subunit methyltransferase H 2 [Lachnospiraceae
           bacterium 2_1_46FAA]
          Length = 311

 Score =  185 bits (470), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 112/305 (36%), Positives = 171/305 (56%), Gaps = 13/305 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
           +H  VLLE+ +  LN  P  + +D T G GG++   CK  S+    I +D+D  A+    
Sbjct: 4   EHKSVLLEETVNGLNIKPDGIYVDGTLGGGGHAFEVCKQLSDKGSFIGIDQDEAAIEAAG 63

Query: 76  ETMRDYKEQFSLFQATFS----QLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
             +RD+ E+ ++ ++ +     QLQ    DK VDG+V DLGVSS Q+D  +RGFS++   
Sbjct: 64  IRLRDFGERVTIVRSNYCDMKLQLQKLGIDK-VDGIVLDLGVSSYQLDTAERGFSYRVDV 122

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM     ++A D+VN  +  +L RI+   GE+K A  IA  IV  R+    +TT  
Sbjct: 123 PLDMRMDRRQEMTAKDIVNTYSEMELYRIIRDYGEDKFAKNIAKHIVLEREKGSIETTGQ 182

Query: 191 LSSLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L  +I++ +   F KN   HPA R+FQA+RI +N E++ L   L      L   G + ++
Sbjct: 183 LIEIIKRAIPMKFQKNGG-HPAKRTFQAIRIELNRELDVLRDSLDEMIDMLNENGRICII 241

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+VK  F           H  +    + +  + IT+K ++P+ E++ +N RS+
Sbjct: 242 TFHSLEDRIVKSIFRRNENPCTCPSHFPVCVCGNESKGKVITRKPILPSAEELEYNSRSK 301

Query: 308 SAKLR 312
           SAKLR
Sbjct: 302 SAKLR 306


>gi|121595969|ref|YP_987865.1| S-adenosyl-methyltransferase MraW [Acidovorax sp. JS42]
 gi|263433389|sp|A1WC14|RSMH_ACISJ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|120608049|gb|ABM43789.1| S-adenosyl-methyltransferase MraW [Acidovorax sp. JS42]
          Length = 308

 Score =  185 bits (470), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 124/306 (40%), Positives = 176/306 (57%), Gaps = 16/306 (5%)

Query: 20  HVPVLL-EKVIALLNP--APGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSC 73
           H  VLL E V ALL    AP    +D TFG GG+SR    ++G    ++A D+D  A+  
Sbjct: 7   HTTVLLDEAVHALLGDGDAPAGTFVDGTFGRGGHSRLILQRLGPQGRLVAFDKDTEAI-- 64

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            Q   R    +FS+    FS L + +P   V GV+ DLGVSS QID   RGFSF+  GPL
Sbjct: 65  -QAAARITDARFSIRHQGFSHLGE-LPAASVSGVLLDLGVSSPQIDDPQRGFSFRFDGPL 122

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR-QSAPFQTTQDL 191
           DMRM  + G S ++ +  A    +  ++   GEE+ A  IA AIV RR +  P  +T +L
Sbjct: 123 DMRMDTTRGQSVAEWLADAETAQIAEVIRDYGEERFAGPIAKAIVARRTERGPIASTAEL 182

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++   V   +  + +PATR+FQALRIF+N E+EEL Q L  +   L+ GG L+V+SFH
Sbjct: 183 ADIVAGAVKTREPGQ-NPATRTFQALRIFINAELEELQQALEGSLHVLRPGGRLVVISFH 241

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+VK+F A  S +V   R    +   P   +++ +  + P+ ++VA N R+RSA +
Sbjct: 242 SLEDRIVKQFIAQHSKEVYDRRAPF-APPQPMRLRALER--IKPSTDEVAANARARSAVM 298

Query: 312 RAGMRT 317
           R   RT
Sbjct: 299 RVAERT 304


>gi|168182383|ref|ZP_02617047.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum Bf]
 gi|237794792|ref|YP_002862344.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum Ba4 str.
           657]
 gi|263446362|sp|C3KV90|RSMH_CLOB6 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|182674378|gb|EDT86339.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum Bf]
 gi|229262949|gb|ACQ53982.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum Ba4 str.
           657]
          Length = 309

 Score =  185 bits (470), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 116/302 (38%), Positives = 168/302 (55%), Gaps = 9/302 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+ VLLE+ I  LN     V +D T G GG+S+   K  S+   +I +D+D  A+   +E
Sbjct: 5   HISVLLEETIDSLNIKEDGVYVDCTLGGGGHSKEILKKLSHKGKLIGIDQDTSAIKAAKE 64

Query: 77  TMRDYKEQFSL---FQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++DY+    +   F    S L++   DK VDG++ DLGVSS Q+D   RGFS+ K  PL
Sbjct: 65  RLKDYENVIYVHNNFYNIDSILEELDIDK-VDGIIMDLGVSSYQLDEASRGFSYMKDAPL 123

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+    +SA  V+N    ++L +IL   GEEK + +IA  IV++R   P +TT +L 
Sbjct: 124 DMRMNREENLSAYGVINNYKEEELFKILKNYGEEKFSRKIARFIVEKRTENPIETTGELV 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I+K +        HPA R+FQA+RI VN E++ L + +  +   L   G L +++FHS
Sbjct: 184 EIIRKAIPAKFQREGHPAKRTFQAIRIEVNKELQILNKAIEDSVNRLNKDGRLSIITFHS 243

Query: 253 LEDRLVK-KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK KF              I         + ITKK + P++E+   N RSRSAKL
Sbjct: 244 LEDRIVKVKFKELEKPCTCPPSFPICVCGKEPQIKIITKKPIEPSKEEKEINSRSRSAKL 303

Query: 312 RA 313
           R 
Sbjct: 304 RV 305


>gi|330446835|ref|ZP_08310486.1| S-adenosyl-methyltransferase MraW [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328491026|dbj|GAA04983.1| S-adenosyl-methyltransferase MraW [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 315

 Score =  185 bits (470), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 122/315 (38%), Positives = 180/315 (57%), Gaps = 23/315 (7%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQ 75
           +HV VLL + +  L   P  + +D TFG GG+SR    ++G N  + ++DRDP A++  Q
Sbjct: 6   EHVSVLLHESVDGLAIKPDGIYIDGTFGRGGHSRLILSQLGENGRLYSIDRDPQAIAEAQ 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +       +F +    FS ++ Y+  +     VDGV+ DLGVSS Q+D  +RGFSF + G
Sbjct: 66  KI---NDPRFEIIHGPFSGMEKYMEARDLIGRVDGVLLDLGVSSPQLDDAERGFSFMRDG 122

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---PFQT 187
           PLDMRM   SG SA++ + +A   D+  +L   GEE+ A RIA  IV+ R++    P   
Sbjct: 123 PLDMRMDPTSGQSAAEWLAEAEADDIAWVLKEFGEERFAKRIARGIVEHRENPEKEPLTR 182

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T+ L+SLI +   F K+   HPATRSFQA+RI++N+E++E+   L  A   L   G L V
Sbjct: 183 TRQLASLIAEVSPF-KDKHKHPATRSFQAIRIYINSELDEIQTALNGAVNILAPEGRLSV 241

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH------PAVFQSITKKVVVPTQEDVA 301
           +SFHSLEDR+VK+F    S K   V   +P           A  +++  K + P+Q ++ 
Sbjct: 242 ISFHSLEDRMVKRFIRKES-KGPEVPAGLPLTEEQIKALGSAALKTVG-KAIKPSQTELG 299

Query: 302 FNRRSRSAKLRAGMR 316
            N R+RS+ LR   R
Sbjct: 300 HNTRARSSVLRLAER 314


>gi|313622989|gb|EFR93285.1| S-adenosyl-methyltransferase MraW [Listeria innocua FSL J1-023]
          Length = 312

 Score =  185 bits (470), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 106/303 (34%), Positives = 175/303 (57%), Gaps = 11/303 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VLL + + +L   P  + +DAT G  G+S           ++ A D+D  A+   + 
Sbjct: 4   HETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDNAKI 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + +Y ++ +  ++ F  +++ + ++G   VDG+++DLGVSS Q+D  +RGFS+ +   L
Sbjct: 64  KLAEYSDKVTFIKSNFRYMKETLNERGIEAVDGILYDLGVSSPQLDERERGFSYHQDAAL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     ++A  VVN+ + +DL RI    GEEK + +IA  I +RR+  P +TT +L 
Sbjct: 124 DMRMDQEQELTAKKVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTGELV 183

Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  +   ++    HP  R+FQA+RI VN+E+  +   L +A   LK GG + V++FH
Sbjct: 184 DIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLENALTLLKPGGRISVITFH 243

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+ K  F  A++   +     +IP    P  F+  T+K +VP++E++  N R+RSA
Sbjct: 244 SLEDRITKHLFQEATKGPDLPPGLPVIPDEYKPD-FKLATRKPIVPSEEELEQNNRARSA 302

Query: 310 KLR 312
           KLR
Sbjct: 303 KLR 305


>gi|28378805|ref|NP_785697.1| cell division protein MraW [Lactobacillus plantarum WCFS1]
 gi|38258035|sp|Q88V76|RSMH_LACPL RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|28271642|emb|CAD64548.1| cell division protein MraW [Lactobacillus plantarum WCFS1]
          Length = 319

 Score =  185 bits (470), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 117/307 (38%), Positives = 169/307 (55%), Gaps = 13/307 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQ 75
           +H  VLL + IA LN  P  + +D T G GG+SR   +   +  ++ + D+D  A+   Q
Sbjct: 5   EHTTVLLHEAIAALNVRPDGIYVDCTLGGGGHSREILQQLGLEGHLYSFDQDQTAIDYNQ 64

Query: 76  ETMRDYKE--QFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
             +  Y E  Q +  ++ F+ L+  +  +G   VDGVV+DLGVSS Q D   RGFS+Q  
Sbjct: 65  SNLATYLERGQVTFIKSNFANLKTELNARGLDHVDGVVYDLGVSSPQFDDAARGFSYQHD 124

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM  S  ++A  VVN     DL RI    GEEK + ++A  I + R   P  TT 
Sbjct: 125 APLDMRMDQSQKLTAQTVVNTWPYADLVRIFYRYGEEKFSKQVARLIERERAVQPIVTTG 184

Query: 190 DLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L  +I+  +   ++    HPA R FQA+RI VNNE+  L   L  A   +   G + V+
Sbjct: 185 QLVEIIKNAIPARARRTGGHPAKRVFQAIRIAVNNELGVLETSLEQAIDLINVHGRVSVI 244

Query: 249 SFHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           +F SLEDRLVK  F   S   ++     +IP+   P  ++ +++K VVP+  ++  NRR+
Sbjct: 245 TFQSLEDRLVKTIFKEHSDLPELPPGLPVIPAEMQPD-YRLVSRKPVVPSDAEIEANRRA 303

Query: 307 RSAKLRA 313
           RSAKLRA
Sbjct: 304 RSAKLRA 310


>gi|121998878|ref|YP_001003665.1| S-adenosyl-methyltransferase MraW [Halorhodospira halophila SL1]
 gi|263456068|sp|A1WYV1|RSMH_HALHL RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|121590283|gb|ABM62863.1| S-adenosyl-methyltransferase MraW [Halorhodospira halophila SL1]
          Length = 324

 Score =  185 bits (470), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 120/308 (38%), Positives = 181/308 (58%), Gaps = 15/308 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMG--SNVIALDRDPFAVSCGQE 76
           H PVL    +A L+  P    +DAT+G GG++R    ++G    +   DRDP A++  +E
Sbjct: 19  HRPVLYGAALAALDVRPDGCYVDATYGRGGHARGILERLGPQGRLWVADRDPEALAHARE 78

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           T+ D   + ++  A  ++L   + ++G    VDG++ DLG+SS Q+D  DRGFSFQ+ GP
Sbjct: 79  TLAD-DPRCTVLGAELAELPRLLAEQGLAAGVDGLLADLGISSPQVDNPDRGFSFQRDGP 137

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA-PFQTTQD 190
           LDMRM   +G SA+ ++ + + +D+  +L  LGEE+ A RIA AIV  R +  P +TT  
Sbjct: 138 LDMRMDPTTGESAAALLERLSARDIAGVLRQLGEERHAGRIARAIVAARDAGDPPRTTLA 197

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ L+++ V   +  R HPATR+FQALRI VN+E+ +L + L      L  GG L V++F
Sbjct: 198 LARLVEQAVPRREPGR-HPATRTFQALRIAVNDELGQLDRFLEGVIDLLAPGGRLAVIAF 256

Query: 251 HSLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           HSLEDR VK+F   AS  G +     + P+   P   + + + +    + +VA N R+RS
Sbjct: 257 HSLEDRRVKRFIRRASSVGDLPPSVPVPPAGCQPR-LRPLGRDLRA-DEGEVAGNPRARS 314

Query: 309 AKLRAGMR 316
           A LR   R
Sbjct: 315 AVLRVAER 322


>gi|253576122|ref|ZP_04853454.1| MraW methylase MraW [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251844465|gb|EES72481.1| MraW methylase MraW [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 324

 Score =  185 bits (470), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 116/309 (37%), Positives = 172/309 (55%), Gaps = 16/309 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76
           H+ VL E+    L   P  + +D T G GG+S    S    G  +IA D+D +A+   +E
Sbjct: 4   HITVLKEEATEGLRIKPDGIYVDCTLGGGGHSSVILSKLGPGGRLIAFDQDDWALDNAKE 63

Query: 77  TMRDYKEQFSLFQATFSQLQ------DYVPDKG----VDGVVFDLGVSSMQIDCGDRGFS 126
            +  Y ++ +L ++ F  ++      + VP       VDGV+FDLGVSS Q D G+RGFS
Sbjct: 64  RLAAYADKLTLVKSNFRYIEQKLREIEGVPQLNGVPQVDGVLFDLGVSSPQFDEGERGFS 123

Query: 127 FQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           +    PLDMRM  S  ++A ++VN    +++ RIL   GEEK +  IA  I  RR   P 
Sbjct: 124 YNADAPLDMRMDQSAALTAREIVNTWPEREIARILFQYGEEKFSRWIAKVIADRRAQEPI 183

Query: 186 QTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           +TT  L  LI++ +   ++    HPA RSFQALRI VN+E+    +GL +A + L   G 
Sbjct: 184 ETTGQLVELIKEGIPAAARRTGGHPAKRSFQALRIAVNDELGAFEEGLHAAIRCLAPEGR 243

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFN 303
           + V++FHSLEDR+ K+ FAS   K        +         + I +K +VP+++++A N
Sbjct: 244 VSVITFHSLEDRICKQIFASYVEKCTCPPDFPMCVCGGKGSLKLINRKPIVPSEQELADN 303

Query: 304 RRSRSAKLR 312
            R+RSAKLR
Sbjct: 304 PRARSAKLR 312


>gi|23335461|ref|ZP_00120697.1| COG0275: Predicted S-adenosylmethionine-dependent methyltransferase
           involved in cell envelope biogenesis [Bifidobacterium
           longum DJO10A]
 gi|23465877|ref|NP_696480.1| S-adenosyl-methyltransferase MraW [Bifidobacterium longum NCC2705]
 gi|189439036|ref|YP_001954117.1| S-adenosyl-methyltransferase MraW [Bifidobacterium longum DJO10A]
 gi|227547548|ref|ZP_03977597.1| S-adenosyl-methyltransferase [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|239621159|ref|ZP_04664190.1| S-adenosyl-methyltransferase [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|312132476|ref|YP_003999815.1| s-adenosylmethionine-dependent membrane protein [Bifidobacterium
           longum subsp. longum BBMN68]
 gi|322689514|ref|YP_004209248.1| S-adenosyl-methyltransferase [Bifidobacterium longum subsp.
           infantis 157F]
 gi|322691469|ref|YP_004221039.1| S-adenosyl-methyltransferase [Bifidobacterium longum subsp. longum
           JCM 1217]
 gi|42558985|sp|Q8G4R0|RSMH_BIFLO RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263445917|sp|B3DQM3|RSMH_BIFLD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|23326579|gb|AAN25116.1| widely conserved hypothetical protein in upf0117 [Bifidobacterium
           longum NCC2705]
 gi|189427471|gb|ACD97619.1| Putative S-adenosylmethionine-dependent membrane protein
           [Bifidobacterium longum DJO10A]
 gi|227211958|gb|EEI79854.1| S-adenosyl-methyltransferase [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|239515620|gb|EEQ55487.1| S-adenosyl-methyltransferase [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|311773403|gb|ADQ02891.1| Putative S-adenosylmethionine-dependent Membrane protein
           [Bifidobacterium longum subsp. longum BBMN68]
 gi|320456325|dbj|BAJ66947.1| S-adenosyl-methyltransferase [Bifidobacterium longum subsp. longum
           JCM 1217]
 gi|320460850|dbj|BAJ71470.1| S-adenosyl-methyltransferase [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 359

 Score =  185 bits (470), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 119/306 (38%), Positives = 167/306 (54%), Gaps = 13/306 (4%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74
           H+PVLL+  + L+ PA      + +D T G  G+S +F K    + +I +DRD  A+   
Sbjct: 8   HLPVLLDDCVNLMAPALEHENAIAVDCTLGLAGHSIAFLKAAPQARLIGIDRDSEALGLA 67

Query: 75  QETMR--DYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK 129
            E M      ++F    A F QL   + D+    VD V  DLG+SS+QID  DRGFS+  
Sbjct: 68  TERMEREGLADRFIPVHAAFDQLDQVLADQDIERVDAVFMDLGLSSLQIDETDRGFSYSH 127

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM  S  ++A  ++   +  +L RI    GEE+ + +IA AIV RR   PF TT
Sbjct: 128 DAPLDMRMDVSQPLTAERILATYDAAELVRIFKEYGEERFSRQIARAIVARRDKEPFTTT 187

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ L+ + V  +     +PA R FQALRI VN E+++LA  L  A   L  GG L+V 
Sbjct: 188 AQLNRLVDEVVPQAHRPAGNPAKRVFQALRIEVNGELDKLASTLPQAANRLHVGGRLVVE 247

Query: 249 SFHSLEDRLVKKFFA-SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           S+HSLED+ VK F A      V A   +IP +A P  F  +T+  +   + ++A N RS 
Sbjct: 248 SYHSLEDKTVKSFMAQGLRVDVPAGLPVIPPDAQP-FFTDLTRGAIKADEHEIAANPRSA 306

Query: 308 SAKLRA 313
           S +LRA
Sbjct: 307 SVRLRA 312


>gi|110598571|ref|ZP_01386839.1| methyltransferase [Chlorobium ferrooxidans DSM 13031]
 gi|110339805|gb|EAT58312.1| methyltransferase [Chlorobium ferrooxidans DSM 13031]
          Length = 329

 Score =  185 bits (470), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 118/317 (37%), Positives = 184/317 (58%), Gaps = 31/317 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYS----RSFCKMG----SNVIALDRDPFAV 71
           HVPVL ++++A L   PG V +D T G GG+S    R+  K G    S +I +D+D  A+
Sbjct: 7   HVPVLADEIVAFLVQKPG-VYVDGTLGGGGHSLAILRALEKAGYLESSLLIGIDQDDAAL 65

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYV---------PDKGVDGVVFDLGVSSMQIDCGD 122
              +ET+R+++    L +  F ++   +         P K V G++ DLGVSS QID  +
Sbjct: 66  RKAEETLREFRTNSVLVKGNFEEISGVIQRVCSERERPRK-VSGILLDLGVSSFQIDSAE 124

Query: 123 RGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFS+ ++GPLDMRM  SG  SA+D+VN  + ++L +I    GEE ++  I+ AIV  RQ
Sbjct: 125 RGFSYLRNGPLDMRMDSSGQRSAADIVNTCDERELAQIFYRYGEEPRSRAISRAIVGYRQ 184

Query: 182 S-APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
              P  TT++L+ +I + + +  +N I   +R FQALRI VN E++ L + L    ++L+
Sbjct: 185 KHGPISTTEELAGII-RAIAYGGDNVIKTLSRVFQALRIEVNRELDVLREALCDGIESLE 243

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRS-----GKVMAVRHMIPSNAHPAVFQSITKKVVVP 295
             G + V+S+HSLEDR+VK  FA  +      K + +R  +   A     + +T+K ++ 
Sbjct: 244 DHGRMAVISYHSLEDRIVKTVFADSAREDWGPKGVGLREPLKRGA----IRLVTRKPLIA 299

Query: 296 TQEDVAFNRRSRSAKLR 312
           +  + A N R+RSAKLR
Sbjct: 300 SSGETASNSRARSAKLR 316


>gi|329770446|ref|ZP_08261828.1| ribosomal RNA small subunit methyltransferase H [Gemella sanguinis
           M325]
 gi|328836569|gb|EGF86229.1| ribosomal RNA small subunit methyltransferase H [Gemella sanguinis
           M325]
          Length = 310

 Score =  185 bits (470), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 112/303 (36%), Positives = 171/303 (56%), Gaps = 8/303 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77
           H  VLLE+ I  LN     + +D T G  G+S    K      + A D+D  A+   +  
Sbjct: 4   HYSVLLEEAIEGLNIKDDGIYVDCTLGGAGHSLEILKKLTTGKLYAFDQDNVALENAKIK 63

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           + +Y ++    ++ F  L++ + ++ V   DGV++DLGVSS Q+D  +RGFS+     LD
Sbjct: 64  LSEYADKVVFIKSNFENLKEKLAEQNVYEVDGVLYDLGVSSPQLDTPERGFSYNYDTRLD 123

Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM   + ISA +VVN+ +  DL RI    GEEK + +IA  I K+R+ AP +TT  L  
Sbjct: 124 MRMDTDASISAYEVVNEYSYHDLVRIFYRYGEEKFSKQIARNIEKKRELAPIETTFQLVD 183

Query: 194 LIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +I++++  +K     HPA R FQA+RI VNNE+      L  A   +K GG + V++FHS
Sbjct: 184 IIKESIPAAKRRTGGHPAKRVFQAIRIAVNNELSVFENSLEQAIDIVKVGGRISVITFHS 243

Query: 253 LEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+ K+ F S +      +++ I  N   +  + IT+K + P+ +++  N RSRSAKL
Sbjct: 244 LEDRICKQIFNSYAKNKEIPKNLPILPNESLSKLKLITRKPICPSDKELEENNRSRSAKL 303

Query: 312 RAG 314
           R  
Sbjct: 304 RVA 306


>gi|297588285|ref|ZP_06946928.1| S-adenosyl-methyltransferase MraW [Finegoldia magna ATCC 53516]
 gi|297573658|gb|EFH92379.1| S-adenosyl-methyltransferase MraW [Finegoldia magna ATCC 53516]
          Length = 312

 Score =  185 bits (470), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 108/308 (35%), Positives = 167/308 (54%), Gaps = 9/308 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           HVP+LL + I  LN   GK+ +D T G  G+SR   K   N  +I  D+D  A++  +E 
Sbjct: 5   HVPILLNECIENLNIRDGKIYVDCTVGGAGHSREIAKRIGNGKLICFDQDEDALTVAKER 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +++Y ++    +  F  ++  + + G   VDG++ D+GVSS QID   RGFS+     LD
Sbjct: 65  LKEYGDKVIFIKDNFKNIKSDLQNIGIEKVDGILMDIGVSSYQIDEDSRGFSYMHDAVLD 124

Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM  +  I+A D+VN  + +DL  I+    EEK A RIA  I   R+  P  TT +L  
Sbjct: 125 MRMDQTNPITAKDIVNTYSQEDLENIIFKYSEEKWAKRIAEFICNEREVKPINTTFELVE 184

Query: 194 LIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           +I+K +      N + H A ++FQA+RI VN E++ L Q +      L   G + +++FH
Sbjct: 185 VIEKAIPKKVRMNQKGHSAKKTFQAIRIEVNKELDVLEQAVGDCIDLLNPEGRICIITFH 244

Query: 252 SLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLED++ K  F  R  G +      +    H    + IT+K + P+ E++  N R+RSAK
Sbjct: 245 SLEDKICKDIFKQRQKGCICPPEIPVCVCNHKPEIKIITRKPIEPSTEELKQNSRARSAK 304

Query: 311 LRAGMRTV 318
           LR   + +
Sbjct: 305 LRVAEKII 312


>gi|237756569|ref|ZP_04585091.1| S-adenosyl-methyltransferase MraW [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237691269|gb|EEP60355.1| S-adenosyl-methyltransferase MraW [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 293

 Score =  185 bits (469), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 110/305 (36%), Positives = 181/305 (59%), Gaps = 22/305 (7%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76
           +H  VL  +V+       G + +DAT G GG+S    K   N+  I LD+D FA+   +E
Sbjct: 3   EHYSVLHREVLEFSKLVAGGIFVDATVGGGGHSYLILKQNPNLKLIGLDKDDFALKVAKE 62

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +++++++ +L +++F  L   +     + ++G++FD GVS+ Q+   +RGFSFQ+   L
Sbjct: 63  RLKEFEDRITLLKSSFKDLDKVLQSLQIREINGILFDFGVSTFQLKL-ERGFSFQREEFL 121

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  +  ++A DVVN    +DL  I+   GEEK AS+IA +I + R+    +TT++L+
Sbjct: 122 DMRMDTTQKLTAYDVVNYYREQDLYNIIKTYGEEKFASKIAKSIAEYRKKKKIETTKELA 181

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            ++ +    + ++ +IHPATR+FQA+RI VNNE++++ +GL  A   L   G ++ +SFH
Sbjct: 182 DIVYRCYPPNLRHGKIHPATRTFQAIRIEVNNELKDIEEGLEKAINLLAKNGTIMAISFH 241

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+VK  F     K   ++ +          + +TKK + P+ E++  N  SRSAKL
Sbjct: 242 SLEDRIVKNTFK----KYKELKFL----------EILTKKPITPSDEEIKENPASRSAKL 287

Query: 312 RAGMR 316
           R G R
Sbjct: 288 RVGRR 292


>gi|325128828|gb|EGC51687.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis N1568]
          Length = 328

 Score =  185 bits (469), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 116/306 (37%), Positives = 172/306 (56%), Gaps = 10/306 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMG--SNVIALDRDPFAVSCGQE 76
           H+ VLL + +  L      V +D TFG GG+SR    ++G    +I  D+DP A++  +E
Sbjct: 9   HITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFDKDPQAIAVAEE 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             R  K +  +    F+  Q  +   G   VDG +FDLG+SS QID G RGFSF+   PL
Sbjct: 69  LARSDK-RVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGSRGFSFRFDAPL 127

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  + G+SA++ +   + +DL  ++   GEE+ + +IA AIV +R  +P  TT+ L+
Sbjct: 128 DMRMDTTRGMSAAEWIAVVSEQDLHEVIKNYGEERFSRQIARAIVAQRAESPIDTTRKLA 187

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            ++ + V   +  +  PATR+FQA+RIF+N E+EE+   L      LK GG L V++FHS
Sbjct: 188 QIVAQNVRTRERGQ-DPATRTFQAVRIFINRELEEVGAVLPQVMCRLKEGGRLAVIAFHS 246

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK+F    S      R      A  P +   I  + + P + ++A N R+RSA L
Sbjct: 247 LEDRIVKQFVKKYSQHAPLPRWAAVREADLPELPLKIVGRALKPGEAEIAANPRARSAVL 306

Query: 312 RAGMRT 317
           R   RT
Sbjct: 307 RVAERT 312


>gi|317014121|gb|ADU81557.1| 16S rRNA m(4)C1402 methyltranserfase [Helicobacter pylori
           Gambia94/24]
          Length = 308

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 120/302 (39%), Positives = 178/302 (58%), Gaps = 16/302 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVSCGQET 77
           H  VLL++V+    P    V++D T G GG+S++    K    +I +D+D FA    +E 
Sbjct: 8   HQSVLLQEVLQAFAPLEEGVLIDCTLGLGGHSKAILSQKPHLKLIGIDKDKFAQEIAKER 67

Query: 78  MRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++ ++ ++ L    F++  ++ +   G  + GV+ DLGVSS+Q+D  +RGF+F  S  LD
Sbjct: 68  LKAFEGRYHLLSGGFAKRFKEALEIHGERIKGVLVDLGVSSLQLDDDNRGFNFH-SHALD 126

Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM   S ++A  V+N   V  L +I    GE K+  +IAH IV+RR   PF+  +DLS 
Sbjct: 127 MRMDLESELNAQKVINSYPVVALEKIFRDYGEIKEYKKIAHKIVERRAKKPFKDAKDLSE 186

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
            +      SKN +IHPAT  FQA+RI VN+E+EEL + L+ A + LK G +L V+SFHSL
Sbjct: 187 FLSS---LSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCA-RNLK-GAILCVISFHSL 241

Query: 254 EDRLVKKFFASRSGKVM---AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           ED LVK  F   +   +   +      SN H A+   +TKK + P+ E++  NRRSRSAK
Sbjct: 242 EDALVKNAFKDYAKNCICDPSSFKCACSNNH-ALGAILTKKPITPSPEEIKNNRRSRSAK 300

Query: 311 LR 312
           +R
Sbjct: 301 MR 302


>gi|94970665|ref|YP_592713.1| S-adenosyl-methyltransferase MraW [Candidatus Koribacter versatilis
           Ellin345]
 gi|263433351|sp|Q1IKG1|RSMH_ACIBL RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|94552715|gb|ABF42639.1| methyltransferase [Candidatus Koribacter versatilis Ellin345]
          Length = 313

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 127/310 (40%), Positives = 181/310 (58%), Gaps = 30/310 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGS--NVIALDRDPFAVSCGQE 76
           HV VL ++ I  L    G   LDAT G GG+S    K +G+  ++IALD+D  A+   + 
Sbjct: 20  HVSVLSQEAIDFLAIRRGGTYLDATLGLGGHSYEIAKRLGAQGHLIALDKDTNALEMARR 79

Query: 77  TMR----DYKE---QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
            +     D KE   Q +L  A+F++++ ++  K +DGV+ DLG+SSMQ+    RGFSFQ 
Sbjct: 80  RLEQVPDDLKEDWPQITLLHASFAEMKQHIASKSLDGVLADLGISSMQLQDAGRGFSFQA 139

Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM+  G ++A  VVN  + ++L  ++   GEE+++ RIA AI + R   P +TT
Sbjct: 140 EGPLDMRMNPHGDLTAEQVVNHTSERELADVIYEFGEERRSRRIARAICRAR---PIRTT 196

Query: 189 QDLSSLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
             L+ +I            RIHPAT++FQALRIFVN+E+++L + L S    L   G L+
Sbjct: 197 AHLAQVISVAARPMNQAERRIHPATKTFQALRIFVNHELDDLKELLASVPSRLVPRGRLV 256

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+SFHSLEDR+VK     R G            A    ++ +TKK V  T+E++  N RS
Sbjct: 257 VISFHSLEDRIVKDSL--RDG------------ASAGKYELLTKKPVTATEEEIDRNPRS 302

Query: 307 RSAKLRAGMR 316
           RSAKLRA  R
Sbjct: 303 RSAKLRAAAR 312


>gi|313607742|gb|EFR83963.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL
           F2-208]
          Length = 312

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 107/303 (35%), Positives = 174/303 (57%), Gaps = 11/303 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VLL + + +L      + +DAT G  G+S           ++ A D+D  A+   + 
Sbjct: 4   HETVLLHETVDMLEVKSDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDNAKI 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + DY ++ +  +A F  +++ + ++G   VDG+++DLGVSS Q+D  +RGFS+ +   L
Sbjct: 64  KLADYSDKVTFIKANFRDMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQDAAL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     ++A  VVN+ + +DL RI    GEEK + +IA  I +RR+  P +TT +L 
Sbjct: 124 DMRMDQEQELTAKTVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTGELV 183

Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  +   ++    HP  R+FQA+RI VN+E+  +   L  A   LK GG + V++FH
Sbjct: 184 DIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLLKPGGRISVITFH 243

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+ K+ F  A++   +     +IP    P  F+  T+K +VP++E++  N R+RSA
Sbjct: 244 SLEDRITKQLFQEATKGPDLPPGLPVIPDEYKPD-FKLATRKPIVPSEEELEQNNRARSA 302

Query: 310 KLR 312
           KLR
Sbjct: 303 KLR 305


>gi|312869527|ref|ZP_07729682.1| S-adenosyl-methyltransferase MraW [Lactobacillus oris PB013-T2-3]
 gi|311094974|gb|EFQ53263.1| S-adenosyl-methyltransferase MraW [Lactobacillus oris PB013-T2-3]
          Length = 317

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 115/305 (37%), Positives = 175/305 (57%), Gaps = 13/305 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77
           HV VLL++ +A LN  P    +D T G GG++ +        ++ + D+D  A+   ++ 
Sbjct: 8   HVTVLLQEAVAGLNVQPAGTYVDGTLGGGGHTSAILGQLTTGHLYSFDQDETAIDYNRDR 67

Query: 78  MRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           ++D     + +L +  F  LQ  +  +GV   DGV++DLGVSS Q D   RGFS+Q   P
Sbjct: 68  LKDALAAGKLTLIEDNFRHLQKDLAAQGVHKVDGVLYDLGVSSPQFDDAQRGFSYQLDAP 127

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+    +SA +VVN+   + L RIL   GEE+ A +IA  I +RRQ  P +TT +L
Sbjct: 128 LDMRMNQGQSLSAMEVVNEWPYERLVRILYRYGEERFAKQIARKIEQRRQREPIRTTFEL 187

Query: 192 SSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I++ +   ++ +  HPA +SFQA+RI VN+E+  L + L  A   L  GG + V++F
Sbjct: 188 VDVIKEAIPAAARRHGGHPAKKSFQAIRIAVNDELGALEESLEQALAMLAVGGRISVITF 247

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH---MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
            SLEDRLVK  F  +S     +     +IP    P  F+ I +K ++P  +++A N R+ 
Sbjct: 248 QSLEDRLVKTMFKEKSSISDDLPQGLPVIPEGMSPD-FKLINRKPILPGTQELAENHRAH 306

Query: 308 SAKLR 312
           SAKLR
Sbjct: 307 SAKLR 311


>gi|229174585|ref|ZP_04302115.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus MM3]
 gi|228608890|gb|EEK66182.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus MM3]
          Length = 310

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 113/303 (37%), Positives = 171/303 (56%), Gaps = 11/303 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HV VLL++ +  L+  P    +D T G GG+S         G  +IA D+D  A+   +E
Sbjct: 4   HVTVLLKETVDGLDIKPDGTYVDCTLGGGGHSSYLLSQLTEGGRLIAFDQDEIAIQNAKE 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
               Y EQF   ++ F  L + + + G   VDG++FDLGVSS Q+D  +RGFS+    PL
Sbjct: 64  KFSSYGEQFITVKSNFRYLSEKLQELGITEVDGILFDLGVSSPQLDTPERGFSYHHDAPL 123

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     ++A DVVN  + + L RI    GEEK + +I   I   R++   +TT +L 
Sbjct: 124 DMRMDQDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIVRKIEAYRENKAIETTGELV 183

Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            LI++ +   ++    HPA R FQA+RI VN+E++   + L SA   +K GG + V++FH
Sbjct: 184 ELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIDMVKPGGRVSVITFH 243

Query: 252 SLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+ K  F   S + ++     +IP    P + + IT+K ++P+  ++  N R+RSA
Sbjct: 244 SLEDRICKTTFKRNSTTPQLPPGLPIIPDEFKPKL-KLITRKPILPSDIELEENNRARSA 302

Query: 310 KLR 312
           KLR
Sbjct: 303 KLR 305


>gi|254303471|ref|ZP_04970829.1| cell envelope biogenesis S-adenosylmethionine (SAM)-dependent
           methyltransferase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148323663|gb|EDK88913.1| cell envelope biogenesis S-adenosylmethionine (SAM)-dependent
           methyltransferase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 314

 Score =  184 bits (468), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 109/313 (34%), Positives = 177/313 (56%), Gaps = 20/313 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+PVL  + +  L   P  + +D T G G +S    +  S+   +I++D+D  A+   ++
Sbjct: 9   HIPVLYYETLDNLVKNPDGIYIDCTLGGGSHSEGILERLSDKGLLISIDQDTNAIEYSKK 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  +  ++ +F+  F  +       GVD   G++ D+GVSS Q+D  DRGFS++    L
Sbjct: 69  RLEKFGSKWKVFKGNFENIDTIAYMAGVDKVDGILMDIGVSSKQLDDPDRGFSYRYDVKL 128

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+    ISA DVVN  + + L++I+   GEE+ A +IA  IV+ R+S+P + T DL 
Sbjct: 129 DMRMNTEQKISAYDVVNTYSEEQLSKIIFEYGEERHARKIAKLIVEERKSSPIEKTSDLI 188

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +LI++   + +    HPA ++FQA+RI VN E+E L   +  A + LK GG L +++FHS
Sbjct: 189 TLIKRA--YPERASKHPAKKTFQAIRIEVNRELEVLENAMSKAVELLKVGGRLAIITFHS 246

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV------FQSITKKVVVPTQEDVAFNRRS 306
           LEDR+VK  F     K +A     P +    V      F+ +TKK ++P  +++  N R+
Sbjct: 247 LEDRIVKNKF-----KDLATACKCPKDIPICVCGGVKKFEIVTKKPIIPIDDELKNNNRA 301

Query: 307 RSAKLRAGMRTVE 319
            S+KLR   R ++
Sbjct: 302 HSSKLRILERILD 314


>gi|158522805|ref|YP_001530675.1| S-adenosyl-methyltransferase MraW [Desulfococcus oleovorans Hxd3]
 gi|263446302|sp|A8ZXX1|RSMH_DESOH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|158511631|gb|ABW68598.1| S-adenosyl-methyltransferase MraW [Desulfococcus oleovorans Hxd3]
          Length = 312

 Score =  184 bits (468), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 116/306 (37%), Positives = 175/306 (57%), Gaps = 12/306 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  V+ ++ +ALLN   GK++ D T G GG++    +       +I +D+DP A++  ++
Sbjct: 5   HTSVMPDQAVALLNCEKGKIVADCTLGGGGHAVRIAEQILPEGLLIGIDKDPAALAHAKQ 64

Query: 77  TMRDYKEQFSLFQ---ATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  + E+    +   A FS++   +    VDGV+ DLG+S  QID   RGFSF+K  PL
Sbjct: 65  ALSVFGERVLYVRGNFADFSEILSSLDIPAVDGVLLDLGLSFYQIDGSGRGFSFRKDEPL 124

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     ++A+D+VNQ+   DL RI    GEE+ ASRIA  IV+ R+SAP  T+  L+
Sbjct: 125 DMRMDPDQSLTAADLVNQSAEADLVRIFREFGEERYASRIARRIVEARRSAPVTTSGQLA 184

Query: 193 SLIQKTVYFSKNN---RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            ++    Y +K     +I PATR F ALRI VN E+E L + L +    +K GG + V+S
Sbjct: 185 RIVTDA-YPAKERHTAKIDPATRVFMALRIAVNTELENLERFLDTVIDRIKPGGRICVLS 243

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK+         +    + + S +     + +T+K +VPT E+V  N  +RS
Sbjct: 244 FHSLEDRMVKRRMKLWEKACVCPPGLPVCSCSKQRECRIVTRKALVPTAEEVQANPMARS 303

Query: 309 AKLRAG 314
            +LRA 
Sbjct: 304 VRLRAA 309


>gi|53803411|ref|YP_114850.1| S-adenosyl-methyltransferase MraW [Methylococcus capsulatus str.
           Bath]
 gi|115311584|sp|Q604V0|RSMH_METCA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|53757172|gb|AAU91463.1| S-adenosyl-methyltransferase MraW [Methylococcus capsulatus str.
           Bath]
          Length = 301

 Score =  184 bits (468), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 119/299 (39%), Positives = 182/299 (60%), Gaps = 13/299 (4%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMG--SNVIALDRDPFAVSCGQETMRD 80
           +L +V+ +L   P  + +D TFG GG+SR+   ++G    ++A+DRD  AV+    T   
Sbjct: 1   MLSEVLEMLAVRPDGIYVDCTFGRGGHSRAILERLGPEGRLLAIDRDLEAVAAAGATGLS 60

Query: 81  YKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
              +F +    FS +  +V  +G    VDG++ DLGVSS Q+D   RGFSF ++GPLDMR
Sbjct: 61  ADARFGIEHGRFSDVGRFVGARGWTGRVDGILMDLGVSSPQLDNARRGFSFLRAGPLDMR 120

Query: 137 MS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M      +A++ + + + ++L R+L   GEE+ A RIA A+V+ R+  P  TT DL  LI
Sbjct: 121 MDPTQKTTAAEWLAEVSERELARVLRDYGEERFAGRIARAVVEERRRRPIVTTTDLVRLI 180

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           +  + F K+   HPATR+FQA+RI VN+E+ +L QGL  A + L AGG L+V+SFHSLED
Sbjct: 181 EAAIPF-KDKFKHPATRTFQAIRIAVNDELGQLQQGLNEAVEVLAAGGRLVVISFHSLED 239

Query: 256 RLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           R+VK+F    + G+ MA   +  + + P +  ++  K +    +++  N R+RSA LRA
Sbjct: 240 RIVKRFMRDEARGREMAG-GIFETRSCPRL--AVLGKPLKAGDDEIRINPRARSALLRA 295


>gi|16801213|ref|NP_471481.1| S-adenosyl-methyltransferase MraW [Listeria innocua Clip11262]
 gi|20139025|sp|Q929X6|RSMH_LISIN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|16414661|emb|CAC97377.1| lin2147 [Listeria innocua Clip11262]
          Length = 312

 Score =  184 bits (468), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 107/303 (35%), Positives = 177/303 (58%), Gaps = 11/303 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGS--NVIALDRDPFAVSCGQE 76
           H  VLL + + +L   P  + +DAT G  G+S     K+    ++ A D+D  A+   + 
Sbjct: 4   HETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEQGHLFAFDQDQTAIDNAKI 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + +Y ++ +  ++ F  +++ + ++G   VDG+++DLGVSS Q+D  +RGFS+ +   L
Sbjct: 64  KLAEYSDRVTFIKSNFRYMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQDAAL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     ++A  VVN+ + +DL RI    GEEK + +IA  I +RR+  P +TT +L 
Sbjct: 124 DMRMDQEQELTAKKVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTGELV 183

Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  +   ++    HP  R+FQA+RI VN+E+  +   L +A   LK GG + V++FH
Sbjct: 184 DIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLENALTLLKPGGRISVITFH 243

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+ K  F  A++   +     +IP    P  F+  T+K +VP++E++  N R+RSA
Sbjct: 244 SLEDRITKYLFQEATKGPDLPPGLPVIPDEYKPD-FKLATRKPIVPSEEELEQNNRARSA 302

Query: 310 KLR 312
           KLR
Sbjct: 303 KLR 305


>gi|330721283|gb|EGG99370.1| rRNA small subunit methyltransferase H [gamma proteobacterium
           IMCC2047]
          Length = 312

 Score =  184 bits (468), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 118/314 (37%), Positives = 180/314 (57%), Gaps = 22/314 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H  VLL + +  L   PG   +D TFG GG+SR+     S+   ++ +D+DP A++   E
Sbjct: 7   HDSVLLNEAVDALVVDPGGCYVDGTFGRGGHSRAILSRLSSKGRLLVIDKDPQAIAYAHE 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVP----DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              D  E+  +  A+F++L+D       + GV GV+ DLGVSS Q+D  +RGFSF + GP
Sbjct: 67  HFGD-DERVIIGHASFAELKDLAAAHGLENGVTGVLLDLGVSSPQLDDPERGFSFTQDGP 125

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G SA++ + +A  ++++ +L   GEE+ A R+A AIV  R   PF  T  L
Sbjct: 126 LDMRMDTSRGQSAAEWIAEAPEEEISTVLKEYGEERFARRMAKAIVAERAQRPFTRTAHL 185

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + +I++     +  + +PATR+FQ +RIF+N E+++LA  L  A   L   G L+V+SFH
Sbjct: 186 AEVIKQANPAWEKGK-NPATRAFQGIRIFINRELDDLALVLDQAVDLLADKGRLVVISFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK------KVVVPTQEDVAFNRR 305
           SLEDR+VKKF   +       RH+      P +   I +      K V  +++++  N R
Sbjct: 245 SLEDRIVKKFIHKQEKGEPLPRHL------PIMQDQIDQRLKRVGKAVKASEQELKDNVR 298

Query: 306 SRSAKLRAGMRTVE 319
           +RSA +R   RTV+
Sbjct: 299 ARSAIMRIAERTVK 312


>gi|305681071|ref|ZP_07403878.1| S-adenosyl-methyltransferase MraW [Corynebacterium matruchotii ATCC
           14266]
 gi|305659276|gb|EFM48776.1| S-adenosyl-methyltransferase MraW [Corynebacterium matruchotii ATCC
           14266]
          Length = 341

 Score =  184 bits (468), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 117/320 (36%), Positives = 175/320 (54%), Gaps = 28/320 (8%)

Query: 20  HVPVLLEKVIALLNPA------PGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAV 71
           HVPVL E+V  LL PA         +ILDAT GAGG+S  F      V  I LDRD  A+
Sbjct: 9   HVPVLRERVTELLAPALCNTITNPPIILDATLGAGGHSEYFLTTFPQVHIIGLDRDTTAL 68

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVP--------------DKGVDGVVFDLGVSSMQ 117
           +     + D+ ++ +     F      +                +G+ G +FDLGVSSMQ
Sbjct: 69  AQAATRLADFGDRITTLHTRFDDFPTAIQAAADAGNATCQAALTEGISGALFDLGVSSMQ 128

Query: 118 IDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
           +D  +RGF+++   PLDMRM+ S GI+A++++N     DLTRIL   G+E+ AS+IA AI
Sbjct: 129 LDQVNRGFAYRVDAPLDMRMNNSEGITAAEILNTYPHGDLTRILKTYGDERFASKIATAI 188

Query: 177 VKRRQSAPFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           ++ R+ APF T+  L  L+  T+   ++    HPA R+FQALRI VN E+  +   L   
Sbjct: 189 IREREHAPFTTSARLVELLYNTIPAATRRTGGHPAKRTFQALRIEVNQELAAITNVLPRI 248

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVV 293
             AL  GG  + +++ SLED+++KK+FA  + S     +   +P  A  A F+ +T+   
Sbjct: 249 ADALIPGGRAVFMAYQSLEDKIIKKYFAEITTSKTPRGLPMELPEYA--AKFRLVTRGAE 306

Query: 294 VPTQEDVAFNRRSRSAKLRA 313
             T  ++A N R+   ++RA
Sbjct: 307 KATPAEIADNSRAAPVRVRA 326


>gi|239826514|ref|YP_002949138.1| S-adenosyl-methyltransferase MraW [Geobacillus sp. WCH70]
 gi|263455972|sp|C5D8L5|RSMH_GEOSW RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|239806807|gb|ACS23872.1| S-adenosyl-methyltransferase MraW [Geobacillus sp. WCH70]
          Length = 310

 Score =  184 bits (468), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 109/303 (35%), Positives = 176/303 (58%), Gaps = 11/303 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H  VLL++ +  L+  P  + +D T G GG+S       S    + A D+D  A+   ++
Sbjct: 4   HTTVLLKEAVDGLHIKPDGIYVDCTLGGGGHSEYLLSQLSEDGRLFAFDQDDMAIEYAKK 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  Y++Q +  +  F  L + +  +GV   DG++FDLGVSS Q+D  +RGFS+    PL
Sbjct: 64  RLARYEKQVTFIRRNFRFLAEELTARGVHRVDGILFDLGVSSPQLDTPERGFSYHHDAPL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+    ++A D+VN    ++L  I    GEEK + ++A  I + R+    +TT  L 
Sbjct: 124 DMRMNREQSLTAYDIVNHWPYEELVHIFFHYGEEKFSKQVARKIEEVRKEKRIETTGQLV 183

Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I++ +   ++ +  HPA R FQA+RI VN+E++   + +  A   LK+GG + V++FH
Sbjct: 184 DIIKEAIPAPARRSGGHPAKRIFQAIRIAVNDELQAFKEAITQAIDLLKSGGRISVITFH 243

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+ K  F  AS+  ++     +IP    PA+ + ITKK +VP++E++  N R+RSA
Sbjct: 244 SLEDRICKVAFKEASQGPQLPPGLPLIPDQYRPAL-KIITKKPIVPSEEEIEHNHRARSA 302

Query: 310 KLR 312
           KLR
Sbjct: 303 KLR 305


>gi|297571245|ref|YP_003697019.1| S-adenosyl-methyltransferase MraW [Arcanobacterium haemolyticum DSM
           20595]
 gi|296931592|gb|ADH92400.1| S-adenosyl-methyltransferase MraW [Arcanobacterium haemolyticum DSM
           20595]
          Length = 336

 Score =  184 bits (468), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 111/307 (36%), Positives = 170/307 (55%), Gaps = 10/307 (3%)

Query: 20  HVPVLLEKVIALLNPA--PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQ 75
           HVPVLL+ +I +L PA     V++D T G GG+S +F +      VI +DRD  A+    
Sbjct: 11  HVPVLLQPIIDMLGPALEGDSVLIDCTLGMGGHSEAFLRTFPSLRVIGIDRDEQAIELAS 70

Query: 76  ETMRDYKEQFSLFQATFSQLQ----DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
             +  + ++F     T+  +      Y     VD ++ DLGVSS+Q+D  DRGFS+ +  
Sbjct: 71  ARLAPFGDRFQAVHTTYDDVDRVAFTYGKSGCVDAILMDLGVSSLQLDEVDRGFSYSQDA 130

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  S G++A +++N  +  ++ RIL + GEEK AS+IA AIVKRR+  P + T++
Sbjct: 131 PLDMRMDTSKGMTAGELLNSYSHGEIARILRVYGEEKFASQIARAIVKRREDHPLERTRE 190

Query: 191 LSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ L++ T+   ++    +P+ R+FQALR+ VNNE++ L   +  A +AL+ GG + V S
Sbjct: 191 LADLVRDTIPAPARRKGGNPSKRTFQALRVAVNNELDVLEAAVPRALEALRVGGRIAVES 250

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           + SLEDR+VK  F             I    H      +T+      + +   N RS S 
Sbjct: 251 YQSLEDRIVKDAFNVGLTSTSPAGLPIELADHAPYLAPLTRGAFKADRTEQELNPRSASV 310

Query: 310 KLRAGMR 316
           +LR   R
Sbjct: 311 RLRGAER 317


>gi|126649733|ref|ZP_01721969.1| S-adenosyl-methyltransferase MraW [Bacillus sp. B14905]
 gi|126593452|gb|EAZ87397.1| S-adenosyl-methyltransferase MraW [Bacillus sp. B14905]
          Length = 316

 Score =  184 bits (468), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 113/304 (37%), Positives = 173/304 (56%), Gaps = 11/304 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
           DH  VLL++ +  LN  P  V +D T G  G+S       S+   +I  D+D  A+   +
Sbjct: 3   DHTTVLLKETVDGLNIDPDGVYVDCTLGGAGHSEYLVHQLSDKGRLICFDQDMTAIENAK 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +  Y E+ +   + F  L++ +   G   VDG+++DLGVSS Q+D  +RGFS+    P
Sbjct: 63  IRLAPYIERVTFIHSNFRYLKEELLAHGFEQVDGILYDLGVSSPQLDTPERGFSYHHDAP 122

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM   + ++A +VVNQ   +DL RI    GEEK + ++A  I + R+SAP +TT  L
Sbjct: 123 LDMRMDQTATLTAFEVVNQWAYEDLVRIFFRYGEEKFSKQVARKIEEARKSAPIETTGQL 182

Query: 192 SSLIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             LI++ +  +   +  HPA R FQA+RI VN+E+      L  A   +  GG + V++F
Sbjct: 183 VELIKEGIPAAARRKGGHPAKRIFQAIRIAVNDELGAAEDSLVDAIDMINVGGRISVITF 242

Query: 251 HSLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           HSLEDRL K  F  AS   ++     +IP +  P + + I++K ++P+ E++  N R+RS
Sbjct: 243 HSLEDRLCKTIFKEASSLPELPPNLPVIPDDMKPTL-KLISRKPILPSDEELEVNNRARS 301

Query: 309 AKLR 312
           AKLR
Sbjct: 302 AKLR 305


>gi|162449928|ref|YP_001612295.1| methyltransferase [Sorangium cellulosum 'So ce 56']
 gi|262826606|sp|A9FI25|RSMH_SORC5 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|161160510|emb|CAN91815.1| methyltransferase [Sorangium cellulosum 'So ce 56']
          Length = 315

 Score =  184 bits (468), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 113/302 (37%), Positives = 178/302 (58%), Gaps = 22/302 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETM 78
           HV VL  +V+A L+P    V +DAT GAGG++ +  +  G+ VI +DRD  A++  +  +
Sbjct: 23  HVSVLGREVLAALSPVSEGVYVDATLGAGGHTATILETPGARVIGIDRDERALAIARARL 82

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
               ++ +     FS+++ ++   GV   DG++ D+GVSSMQ+D   RG SF+  GPLDM
Sbjct: 83  ARAGDRVTYVHGEFSEIERHLAALGVPQVDGLLADIGVSSMQLDDPGRGMSFRAEGPLDM 142

Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM  S G +A +++ + + ++L  ++   GEE+++ R+A  I +   S    TT DL   
Sbjct: 143 RMDSSRGETALELIERLSDEELADLIYRYGEERRSRRVARCIKQAADSGELVTTLDLRRA 202

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           + + V  ++   + PATR+FQALRI VN E+++L   L +A + +  GG+L V+SFHSLE
Sbjct: 203 VVRAVGPARIGGVDPATRTFQALRIAVNGELDQLEALLEAAPRIIAPGGVLAVISFHSLE 262

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           DR+VK+          A+R        P V++ +TKK V    ++V  N R+RSAKLRA 
Sbjct: 263 DRIVKR----------ALR-------EPEVWEPLTKKPVTAGDDEVEGNPRARSAKLRAA 305

Query: 315 MR 316
            R
Sbjct: 306 RR 307


>gi|315653716|ref|ZP_07906636.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Lactobacillus iners ATCC 55195]
 gi|315489078|gb|EFU78720.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Lactobacillus iners ATCC 55195]
          Length = 315

 Score =  184 bits (468), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 120/312 (38%), Positives = 176/312 (56%), Gaps = 17/312 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           H  VLL + I  LN     V +DATFG GG++    K  SNV  I  D+D +A+   +++
Sbjct: 5   HYSVLLHETIDNLNLKSDGVYVDATFGGGGHASYLLKQLSNVHLIGFDQDEYAIELAKKS 64

Query: 78  MRDY-----KEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             +      K + SL    F  LQ  +       G+DG+ +DLGVSS Q D  +RGFS++
Sbjct: 65  FSEVLKANSKPKLSLVHDNFGNLQQNLAKLGFIDGIDGIYYDLGVSSPQFDQPERGFSYR 124

Query: 129 KSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
            +  LDMRM     + A  +VN  + K+L+ IL   G+EK A +IA  IV +R   P  T
Sbjct: 125 FNARLDMRMDQTKDLDAYKIVNTWSQKELSNILFKYGDEKYARQIAKNIVAKRAIKPITT 184

Query: 188 TQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T +L  +I++ +  F++    HPA +SFQA+RI VN+E+E L + L  A + LK GG + 
Sbjct: 185 TFELVDIIKEAIPAFARRTGGHPAKKSFQAIRIAVNDELEVLEKSLLDAIEILKPGGRIC 244

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           V++F SLED++VKK F   S  V   R M  IP +  P + + I++K +V T +++  N 
Sbjct: 245 VITFQSLEDKIVKKIFKKYSD-VDIPRGMPQIPDSLKPTL-KIISRKPIVATNKELEENN 302

Query: 305 RSRSAKLRAGMR 316
           RS SAKLR   +
Sbjct: 303 RSHSAKLRVAEK 314


>gi|195444651|ref|XP_002069965.1| GK11803 [Drosophila willistoni]
 gi|194166050|gb|EDW80951.1| GK11803 [Drosophila willistoni]
          Length = 368

 Score =  184 bits (468), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 130/332 (39%), Positives = 183/332 (55%), Gaps = 38/332 (11%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           HVPVL E  I  LNP      LD TFGAGG++R      S+  V ALDRDP A     E 
Sbjct: 38  HVPVLCEVAIEYLNPKRNGNYLDMTFGAGGHTRRLLDTCSDCKVYALDRDPLAHQLAIEM 97

Query: 78  MR--DYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +  +YK +       FS L   +  + +     DG+++D G SSMQ D  +RGFS  ++
Sbjct: 98  SQKEEYKGRLVPLFGKFSDLPQLLDGQNLSRNSFDGMLYDFGCSSMQFDVANRGFSISQN 157

Query: 131 GPLDMRMSCSG---ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP-FQ 186
           GPLDMRM       ISA+DV+ +A   DL RIL + GEEK A +IA AIV+ R +    +
Sbjct: 158 GPLDMRMDGGRGGGISAADVLARAEEDDLARILRVYGEEKAAKKIARAIVEARGALQRIE 217

Query: 187 TTQDLSSLIQKTVYFSKNNR------IHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           TT+ L+ L+   +  S + +       H AT++FQALRIFVNNE+ E+  G+  A + L 
Sbjct: 218 TTKQLADLVAAVLGDSSHRQDKLQRPSHAATKTFQALRIFVNNELNEINYGMLLANEVLC 277

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVR-HMIP-------SNAHPAVFQS----- 287
             G L+ ++FHSLED +VK+     +G V+  R + +P           P + QS     
Sbjct: 278 PEGRLVAITFHSLEDTIVKRHL---NGNVIEGRANPVPLKYCGHDVTLDPQLMQSFVQIK 334

Query: 288 ---ITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
              + + V++P  E++A N RSRSAKLRA ++
Sbjct: 335 WRQLHRHVILPDAEEIARNSRSRSAKLRAAIK 366


>gi|134294639|ref|YP_001118374.1| S-adenosyl-methyltransferase MraW [Burkholderia vietnamiensis G4]
 gi|263446940|sp|A4JB86|RSMH_BURVG RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|134137796|gb|ABO53539.1| S-adenosyl-methyltransferase MraW [Burkholderia vietnamiensis G4]
          Length = 313

 Score =  184 bits (468), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 120/311 (38%), Positives = 182/311 (58%), Gaps = 21/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  + +D TFG GG+SR+       G  +IA D+DP A+   Q 
Sbjct: 7   HRTVLLDEAVDSLVTRPDGIYVDGTFGRGGHSRAVLARLAPGGRLIAFDKDPRAIETAQ- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             R    +FS+   +F+ ++D +  +GV+   GV+ DLGVSS Q+D   RGFSF+  GPL
Sbjct: 66  --RIEDARFSIVHDSFASMRDALAARGVEKVSGVLLDLGVSSPQVDDPARGFSFRADGPL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTT 188
           DMRM  + G SA++ + +A+V++LT ++   GEE+ A +IA A+V RR  +    P  TT
Sbjct: 124 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDTT 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ ++   V   +  +  PATR+FQA+RI VN E+ +L   L +A   L+ GG L+V+
Sbjct: 184 GELAQIVGHVVKTREKGK-DPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVI 242

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNRR 305
           SFHSLEDR+VK+F  + +    AV   +P  A      S   K++    P++ +VA N R
Sbjct: 243 SFHSLEDRIVKRFMQAHA-SAPAVDRRLPIRA--VDLPSPPLKIISRQFPSEAEVAANPR 299

Query: 306 SRSAKLRAGMR 316
           +RSA +R   R
Sbjct: 300 ARSAVMRIAER 310


>gi|34499806|ref|NP_904021.1| S-adenosyl-methyltransferase MraW [Chromobacterium violaceum ATCC
           12472]
 gi|42559445|sp|Q7NPZ1|RSMH_CHRVO RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|34105656|gb|AAQ62010.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 320

 Score =  184 bits (468), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 122/317 (38%), Positives = 180/317 (56%), Gaps = 14/317 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL + +  L   P  V +D TFG GG+SR    K+G +  +IA D+DP A++   +
Sbjct: 8   HRTVLLTEAVDALAIRPDGVYVDCTFGRGGHSRLILSKLGPSGRLIAFDKDPEAIAVA-D 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +     +F++    F  L   +      GVDGV+ DLGVSS QID G RGFSF+   PL
Sbjct: 67  RLAAEDSRFNIVHNGFETLSAELARLGVAGVDGVLMDLGVSSPQIDDGSRGFSFRFDAPL 126

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  + G++A++ +  A+  D+  ++   GEE+ A +IA AIV +R  +P  TT++L+
Sbjct: 127 DMRMDTTRGVTAAEWLATADEADIREVIKTYGEERFARKIAAAIVAQRDESPITTTRELA 186

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            L+ + V   +  +  PATR+FQA+RIFVN E++EL   L  A + L  GG L V+SFHS
Sbjct: 187 VLVGQNVRTREPGQ-DPATRTFQAIRIFVNRELDELKAVLPQAARLLNEGGRLAVISFHS 245

Query: 253 LEDRLVKKFF--ASRSGKVMAVRHMIPSN-AHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           LEDR+VK +    S   K+ A   +  ++ A P +   +  K +    E+V  N R+RSA
Sbjct: 246 LEDRIVKLYLRDVSSEEKLPAWAMVRAADMAQPPI--DLVGKAIRAGDEEVRENPRARSA 303

Query: 310 KLRAGMRTVERSIEDDS 326
            +R   RT     E D+
Sbjct: 304 IMRVAQRTAAPWREGDA 320


>gi|331016726|gb|EGH96782.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 313

 Score =  184 bits (468), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 117/307 (38%), Positives = 179/307 (58%), Gaps = 20/307 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76
           H+ VLLE+ +  L        LD TFG GG+SR     +G +  ++  D+DP A++ GQ 
Sbjct: 7   HITVLLEEAVEALAVRADGCYLDGTFGRGGHSRLILNHLGPDGRLLGFDKDPQAIATGQ- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            +     +F + Q +F++L     + G    V G++ DLGVSS Q+D  +RGFSF   GP
Sbjct: 66  ALAAEDGRFVIVQRSFAELGSQAQELGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDGP 125

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G+SA++ +  A  +++ R+    GEE+ A R+A+A+V+RR+  PF+ T DL
Sbjct: 126 LDMRMDPTRGVSAAEFIASAPAEEIARVFKEYGEERFAKRMANAVVQRREIQPFERTADL 185

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++ K    +     +PATR+FQ LRI VNNE+ +L  GL +A ++L+ GG L+V+SFH
Sbjct: 186 AEVL-KVANPAWEKGKNPATRAFQGLRIHVNNELGDLEAGLEAAMESLEVGGRLVVISFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA------FNRR 305
           SLEDR+V K F  +  K  A    +P N  P  +++   K+ +  +   A       N R
Sbjct: 245 SLEDRIV-KLFMRKLAKGEA--DNMPRNL-PIQYKAFEPKIKIHGKAQFASDVETKANPR 300

Query: 306 SRSAKLR 312
           SRSA +R
Sbjct: 301 SRSAVMR 307


>gi|237799282|ref|ZP_04587743.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331022138|gb|EGI02195.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 313

 Score =  184 bits (468), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 116/307 (37%), Positives = 177/307 (57%), Gaps = 20/307 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76
           H+ VLLE+ +  L        LD TFG GG+SR   S       ++  D+DP A++ GQ 
Sbjct: 7   HITVLLEEAVEALAVRADGCYLDGTFGRGGHSRLILSHLGPDGRLLGFDKDPQAIATGQ- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            +     +F + Q +F++L     ++     V G++ DLGVSS Q+D  +RGFSF   GP
Sbjct: 66  ALAAEDGRFVIVQRSFAELGSEALERDLAGKVSGILLDLGVSSPQLDDPERGFSFMNDGP 125

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G+SA++ +  A  +++ R+    GEE+ A R+A+A+V+RR+  PF+ T DL
Sbjct: 126 LDMRMDPTRGVSAAEFIASAPAEEIARVFKEYGEERFAKRMANAVVQRREIQPFERTADL 185

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++ K    +     +PATR+FQ LRI VNNE+ +L  GL +A +AL+ GG L+V+SFH
Sbjct: 186 AEVL-KVANPAWEKGKNPATRAFQGLRIHVNNELGDLEAGLEAAMEALEVGGRLVVISFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVV------PTQEDVAFNRR 305
           SLEDR+V K F  +  K  A    +P N  P  +++   K+ +       +  +   N R
Sbjct: 245 SLEDRIV-KLFMRKLAKGEA--DNMPRNL-PIQYKAFEPKIKIHGKAQFASDTETKANPR 300

Query: 306 SRSAKLR 312
           SRSA +R
Sbjct: 301 SRSAVMR 307


>gi|331269345|ref|YP_004395837.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum BKT015925]
 gi|329125895|gb|AEB75840.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum BKT015925]
          Length = 309

 Score =  184 bits (468), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 110/305 (36%), Positives = 172/305 (56%), Gaps = 7/305 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
           +HVPVLLE+ I  LN     + +D T G  G+S    K  S    +I +D+D  A+   +
Sbjct: 4   NHVPVLLEETIDSLNIKEDGIYVDCTLGGAGHSSHILKRLSKRGKLIGIDQDVNALKAAK 63

Query: 76  ETMRDYKEQFSLFQATFS--QLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           E +++Y     +    ++   + D +  + VDG++ DLGVSS Q+D  +RGFS+ +   L
Sbjct: 64  ERLKNYDNVIYVHNNFYNLASVLDELNIEKVDGILMDLGVSSYQLDTAERGFSYMQDAML 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+    ISA +VVN+ + ++L RI+   GEE+ A +IA AIVK+R+  P +TT DL 
Sbjct: 124 DMRMNTEESISAYNVVNEYSEEELFRIIKEYGEERFARKIAKAIVKQREIEPVKTTLDLV 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I+  +        HPA ++FQA+RI VN+E+E L + +    K L   G + V++FHS
Sbjct: 184 KIIKNVIPMKFQQGGHPAKKTFQAIRIEVNHELEILNKTIEDGVKHLNLDGRISVITFHS 243

Query: 253 LEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK  F          +   +       V + IT+K + P++++   N RSRS+KL
Sbjct: 244 LEDRIVKTKFKKLENPCTCPKEFPVCICGMKPVVKVITRKPLEPSEDEKENNSRSRSSKL 303

Query: 312 RAGMR 316
           R   +
Sbjct: 304 RVAQK 308


>gi|28871551|ref|NP_794170.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213966575|ref|ZP_03394726.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv. tomato
           T1]
 gi|301384710|ref|ZP_07233128.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv. tomato
           Max13]
 gi|302059802|ref|ZP_07251343.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv. tomato
           K40]
 gi|302131749|ref|ZP_07257739.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|38257958|sp|Q87WX7|RSMH_PSESM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|28854802|gb|AAO57865.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213928425|gb|EEB61969.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv. tomato
           T1]
          Length = 313

 Score =  184 bits (468), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 117/307 (38%), Positives = 179/307 (58%), Gaps = 20/307 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76
           H+ VLLE+ +  L        LD TFG GG+SR     +G +  ++  D+DP A++ GQ 
Sbjct: 7   HITVLLEEAVEALAVRADGCYLDGTFGRGGHSRLILNHLGPDGRLLGFDKDPQAIATGQ- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            +     +F + Q +F++L     + G    V G++ DLGVSS Q+D  +RGFSF   GP
Sbjct: 66  ALAAEDGRFVIVQRSFAELGSQAQELGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDGP 125

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G+SA++ +  A  +++ R+    GEE+ A R+A+A+V+RR+  PF+ T DL
Sbjct: 126 LDMRMDPTRGVSAAEFIASAPAEEIARVFKEYGEERFAKRMANAVVQRREIQPFERTADL 185

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++ K    +     +PATR+FQ LRI VNNE+ +L  GL +A ++L+ GG L+V+SFH
Sbjct: 186 AEVL-KVANPAWEKGKNPATRAFQGLRIHVNNELGDLEAGLEAAMESLEVGGRLVVISFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA------FNRR 305
           SLEDR+V K F  +  K  A    +P N  P  +++   K+ +  +   A       N R
Sbjct: 245 SLEDRIV-KLFMRKLAKGEA--DNMPRNL-PIQYKAFEPKIKIHGKAQFASDVETKANPR 300

Query: 306 SRSAKLR 312
           SRSA +R
Sbjct: 301 SRSAVMR 307


>gi|293376042|ref|ZP_06622295.1| S-adenosyl-methyltransferase MraW [Turicibacter sanguinis PC909]
 gi|325844610|ref|ZP_08168253.1| S-adenosyl-methyltransferase MraW [Turicibacter sp. HGF1]
 gi|292645343|gb|EFF63400.1| S-adenosyl-methyltransferase MraW [Turicibacter sanguinis PC909]
 gi|325489035|gb|EGC91422.1| S-adenosyl-methyltransferase MraW [Turicibacter sp. HGF1]
          Length = 310

 Score =  184 bits (468), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 108/307 (35%), Positives = 171/307 (55%), Gaps = 10/307 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQE 76
           +H  VLL + I  L      + +D T G GG+S    K     ++ + D+D FA+    +
Sbjct: 3   NHYSVLLRESIENLEIKEDGIYVDCTLGGGGHSSEILKRLTTGHLYSFDQDSFAIENATK 62

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +++  + F++ ++ F  L++ +  +GV   DG++FDLGVSS Q D  +RGFS+     L
Sbjct: 63  RLKEIGDNFTIIKSNFVHLKEELNARGVMKIDGIIFDLGVSSPQFDTPERGFSYNHDAKL 122

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     +SA ++VN+   K+L  I  +  +EK + +IA AI + R+  P +TT +L 
Sbjct: 123 DMRMDQEAELSAYEIVNEWEYKNLEYIFRVYSDEKFSKQIARAIERYREKQPIETTFELV 182

Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  +   ++    HPA R+FQALRI VN+E++   + L+ A   L   G + V++FH
Sbjct: 183 EIIKSAIPAPARRKGGHPAKRTFQALRIAVNDELKVFEKALKDAMDMLNVEGRVAVITFH 242

Query: 252 SLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+ K  F  RS      R +  IP    P  F+ IT+K +V  + ++  N RS SA
Sbjct: 243 SLEDRICKHMFKERSEAKDLPRGLPVIPQEFQPE-FKLITRKPIVADETELTENNRSHSA 301

Query: 310 KLRAGMR 316
           KLR  M+
Sbjct: 302 KLRVAMK 308


>gi|186477429|ref|YP_001858899.1| S-adenosyl-methyltransferase MraW [Burkholderia phymatum STM815]
 gi|263446931|sp|B2JHG8|RSMH_BURP8 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|184193888|gb|ACC71853.1| S-adenosyl-methyltransferase MraW [Burkholderia phymatum STM815]
          Length = 317

 Score =  184 bits (468), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 119/310 (38%), Positives = 181/310 (58%), Gaps = 19/310 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGS--NVIALDRDPFAVSCGQE 76
           H  VLLE+ +  L      + +D TFG GG+SR+   K+G    +IA D+DP A++  Q+
Sbjct: 11  HRTVLLEEAVNALVTRVDGIYIDGTFGRGGHSRAVLAKLGEAGRLIAFDKDPLAIATAQQ 70

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +F +   +F+ L+D + ++ V    GV+ DLGVSS Q D  +RGFSF+  GPL
Sbjct: 71  V---ADPRFEIVHESFASLRDAMSERAVGRVSGVLLDLGVSSPQFDDPERGFSFRADGPL 127

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTT 188
           DMRM  + G SA+D + +A V+++T ++   GEE+ A +IA A+V RR  +    P  +T
Sbjct: 128 DMRMDPTRGESAADWLARATVQEMTEVIRDYGEERFAFQIAKALVARRAESDRLGPLVST 187

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ ++   V   +  +  PATR+FQA+RI +N E+ EL   L +A   L+ GG L+V+
Sbjct: 188 GELAQIVANVVKTREKGK-DPATRTFQAIRIHINQELAELQVVLEAALSLLEQGGRLVVI 246

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA--HPAVFQSITKKVVVPTQEDVAFNRRS 306
           SFHSLEDR+VK+F  + S    AV   +P  A   P+    +  +V   + E+VA N R+
Sbjct: 247 SFHSLEDRIVKRFMQTHS-SAPAVDRRLPIRAVDLPSPPLKLLGRVFA-SDEEVAANPRA 304

Query: 307 RSAKLRAGMR 316
           RSA +R   R
Sbjct: 305 RSAVMRVAER 314


>gi|28211297|ref|NP_782241.1| S-adenosyl-methyltransferase MraW [Clostridium tetani E88]
 gi|42559471|sp|Q894B4|RSMH_CLOTE RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|28203737|gb|AAO36178.1| S-adenosyl-methyltransferase mraW [Clostridium tetani E88]
          Length = 310

 Score =  184 bits (468), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 111/303 (36%), Positives = 176/303 (58%), Gaps = 12/303 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+ VLL++ I  LN     + +D T G  G+S    K  S    +I +D+D  A+    E
Sbjct: 5   HISVLLDECIEGLNIKENGIYVDCTLGGAGHSSEILKNLSKEGKLIGIDQDEEALKAASE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +++Y E      + F  ++D + +     VDG++ DLGVSS Q+D   RGFS+ ++ PL
Sbjct: 65  KLKEY-ENVLYKHSNFYHIKDILEELEVGKVDGILMDLGVSSYQLDEKSRGFSYMQNAPL 123

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  S + A +VVN  +   L RI+   GEE+ A RI++ IV+ R++   +TT +L 
Sbjct: 124 DMRMNKKSSLDAYEVVNFYDESKLARIIKDYGEERFAKRISNFIVESRENKKIETTGELV 183

Query: 193 SLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
            +I++ +   F +    HPA R+FQA+RI VN E+E L + +  + K+LK+GG + +++F
Sbjct: 184 DIIKRAIPAKFRREGP-HPAKRTFQAIRIEVNGELEILNKAIEDSVKSLKSGGRIAIITF 242

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  F       +  +   I +     + + IT+K + P++E+V  N RSRSA
Sbjct: 243 HSLEDRIVKNKFKELEDPCICPKDFPICTCGKEPLVKIITRKPIDPSKEEVEINPRSRSA 302

Query: 310 KLR 312
           KLR
Sbjct: 303 KLR 305


>gi|308181002|ref|YP_003925130.1| cell division protein MraW [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|308046493|gb|ADN99036.1| cell division protein MraW [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 319

 Score =  184 bits (468), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 118/307 (38%), Positives = 170/307 (55%), Gaps = 13/307 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MG--SNVIALDRDPFAVSCGQ 75
           +H  VLL + IA LN  P  + +D T G GG+SR   + +G   ++ + D+D  A+   Q
Sbjct: 5   EHTTVLLHEAIAALNVRPDGIYVDCTLGGGGHSREILQQLGPEGHLYSFDQDQTAIDYNQ 64

Query: 76  ETMRDYKE--QFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
             +  Y E  Q +  ++ F+ L+  +  +G   VDGVV+DLGVSS Q D   RGFS+Q  
Sbjct: 65  SNLATYLERGQVTFIKSNFANLKTELNARGLDHVDGVVYDLGVSSPQFDDAARGFSYQHD 124

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM  S  ++A  VVN     DL RI    GEEK + ++A  I + R   P  TT 
Sbjct: 125 APLDMRMDQSQKLTAQTVVNTWPYADLVRIFYRYGEEKFSKQVARLIERERAVQPIVTTG 184

Query: 190 DLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L  +I+  +   ++    HPA R FQA+RI VNNE+  L   L  A   +   G + V+
Sbjct: 185 QLVEIIKNAIPARARRTGGHPAKRVFQAIRIAVNNELGVLETSLEQAIDLINVHGRVSVI 244

Query: 249 SFHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           +F SLEDRLVK  F   S   ++     +IP+   P  ++ +++K VVP+  ++  NRR+
Sbjct: 245 TFQSLEDRLVKTIFKEHSDLPELPPGLPVIPAEMQPD-YRLVSRKPVVPSDAEIEANRRA 303

Query: 307 RSAKLRA 313
           RSAKLRA
Sbjct: 304 RSAKLRA 310


>gi|307637393|gb|ADN79843.1| rRNA small subunit methyl transferase H [Helicobacter pylori 908]
          Length = 308

 Score =  184 bits (467), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 119/302 (39%), Positives = 178/302 (58%), Gaps = 16/302 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVSCGQET 77
           H  VLL++V+    P    V++D T G GG+S++    K    +I +D+D FA    +E 
Sbjct: 8   HQSVLLQEVLQAFTPLEEGVLIDCTLGLGGHSKAILSQKPHLKLIGIDKDKFAQEIAKER 67

Query: 78  MRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +++++ +++L    F++  ++ +   G  + GV+ DLGVSS+Q+D  +RGF+F +S  LD
Sbjct: 68  LKEFEGRYNLLSGGFAKRFKEALEIHGERIKGVLVDLGVSSLQLDDDNRGFNF-RSHALD 126

Query: 135 MRMSCSGIS-ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM     S A  V+N   V  L +I    GE K+  +IAH I +RR   PF+  +DLS 
Sbjct: 127 MRMDLESESNAQKVINSYPVVALEKIFRDYGEIKEYKKIAHKIAERRAKKPFKDAKDLSE 186

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
            +      SKN +IHPAT  FQA+RI VN+E+EEL + L+ A + LK G +L V+SFHSL
Sbjct: 187 FLSS---LSKNKKIHPATLVFQAVRIEVNSELEELKEFLQYA-RNLK-GAILCVISFHSL 241

Query: 254 EDRLVKKFFASRSGKVM---AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           ED LVK  F   +   +   +      SN H A+   +TKK + P+ E++  NRRSRSAK
Sbjct: 242 EDGLVKNAFKDYAKNCICDPSSFKCACSNNH-ALGAILTKKPITPSPEEIKNNRRSRSAK 300

Query: 311 LR 312
           +R
Sbjct: 301 MR 302


>gi|320547904|ref|ZP_08042187.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus equinus ATCC 9812]
 gi|320447444|gb|EFW88204.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus equinus ATCC 9812]
          Length = 319

 Score =  184 bits (467), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 118/323 (36%), Positives = 180/323 (55%), Gaps = 19/323 (5%)

Query: 6   CKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VI 62
            K M+   HH     + VLL + + +L+  P  + +DAT G  G+S     K+G N  + 
Sbjct: 1   MKGMTKDFHH-----ITVLLHETVDMLDIKPDGIYVDATLGGAGHSEYLLSKLGPNGHLY 55

Query: 63  ALDRDPFAVSCGQETMRDYKE--QFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQ 117
           A D+D  A+   Q  ++DY E  Q +  +  F  L   +   GV   DG+++DLGVSS Q
Sbjct: 56  AFDQDQTAIDNAQIRLKDYIEKGQVTFIKDNFRNLASNLAMHGVTEIDGILYDLGVSSPQ 115

Query: 118 IDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
           +D  +RGFS++K  PLDMRM+    ++A DVVN  +  DL RI    GE+K + +IA  I
Sbjct: 116 LDERERGFSYKKDAPLDMRMNREQDLTAYDVVNTYDYHDLVRIFYKYGEDKFSKQIARKI 175

Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRS 234
            + RQ  P +TT +L+ +I K+   +K    + HPA + FQA+RI VN+E+    + ++ 
Sbjct: 176 EQARQVKPIETTTELAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQ 234

Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVV 293
           A   L   G + V++FHSLEDRL K+ F   S  +V      IP +  P +   + +K +
Sbjct: 235 AIDLLVVDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDMQPKL-ALVNRKPI 293

Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316
           +P+QE++  N RS SAKLR   +
Sbjct: 294 LPSQEELEANNRSHSAKLRVARK 316


>gi|261365120|ref|ZP_05978003.1| S-adenosyl-methyltransferase MraW [Neisseria mucosa ATCC 25996]
 gi|288566552|gb|EFC88112.1| S-adenosyl-methyltransferase MraW [Neisseria mucosa ATCC 25996]
          Length = 317

 Score =  184 bits (467), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 120/309 (38%), Positives = 169/309 (54%), Gaps = 16/309 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQE 76
           H+ VLL + +  L      + +D TFG GG+SR    ++GS   +I  D+DP A+   Q+
Sbjct: 8   HITVLLNEAVDALAVREDGIYVDGTFGRGGHSRLILSRLGSQGRLIVFDKDPQAIEAAQK 67

Query: 77  TMRD------YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
                       + FS FQ T  +L      + +DG +FDLG+SS QID G RGFSF+  
Sbjct: 68  LAEQDGRVTVVHDGFSSFQTTLDKLGI----EEIDGALFDLGISSPQIDDGARGFSFRFD 123

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM  + G+SA+D +  A+ +DL  ++   GEE+ + +IA AIV +R   P  TT+
Sbjct: 124 APLDMRMDPTRGMSAADWIATASEQDLHEVIKNYGEERFSRQIARAIVAQRAENPIDTTR 183

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            L+ L+ + V   +  +  PATR+FQA+RIF+N E+EE+   L      LK GG L V++
Sbjct: 184 KLAQLVAQNVRTRERGQ-DPATRTFQAVRIFINRELEEVEAVLPQVMGRLKEGGRLAVIA 242

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK+F    S      R      A  P        K + P  E+ A N R+RS
Sbjct: 243 FHSLEDRIVKQFVKKYSQHPPLPRWAAVKEADLPLPPLKAVGKAIKPGVEETASNPRARS 302

Query: 309 AKLRAGMRT 317
           A LR   RT
Sbjct: 303 AVLRVAERT 311


>gi|238026124|ref|YP_002910355.1| S-adenosyl-methyltransferase MraW [Burkholderia glumae BGR1]
 gi|237875318|gb|ACR27651.1| S-adenosyl-methyltransferase MraW [Burkholderia glumae BGR1]
          Length = 313

 Score =  184 bits (467), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 119/311 (38%), Positives = 183/311 (58%), Gaps = 21/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  V +D TFG GG+SR+       G  +IA D+DP A++  Q+
Sbjct: 7   HRTVLLDEAVDALVTRPDGVYVDGTFGRGGHSRAVLARLAEGGRLIAFDKDPLAIATAQQ 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +FS+   +F+ L   + ++GV    GV+ DLGVSS QID  +RGFSF+ +GPL
Sbjct: 67  IA---DPRFSIVHDSFASLGGALAERGVARVTGVLLDLGVSSPQIDDPERGFSFRANGPL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTT 188
           DMRM  + G SA+D + +A++++LT ++   GEE+ A +IA A+V RR+ +    P  +T
Sbjct: 124 DMRMDTTRGESAADWLARASLQELTEVIRDYGEERFAFQIAKALVARREESDRLGPLDST 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ ++   V   +  +  PATR+FQA+RI VN E+ +L   L +A  +L+ GG L+V+
Sbjct: 184 GELAQIVGHAVKTREKGK-DPATRTFQAIRIHVNQELADLQVVLGAALSSLEQGGRLVVI 242

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNRR 305
           SFHSLEDR+VK+F  + +    AV   +P  A      S   K++    P+  +V  N R
Sbjct: 243 SFHSLEDRIVKRFLQTHA-SAPAVDRRLPIRA--VDLPSPPLKLLGRKFPSDAEVDANPR 299

Query: 306 SRSAKLRAGMR 316
           +RSA +R   R
Sbjct: 300 ARSAVMRIAER 310


>gi|56419646|ref|YP_146964.1| S-adenosyl-methyltransferase MraW [Geobacillus kaustophilus HTA426]
 gi|68565432|sp|Q5L0Y4|RSMH_GEOKA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|56379488|dbj|BAD75396.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
          Length = 310

 Score =  184 bits (467), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 116/303 (38%), Positives = 177/303 (58%), Gaps = 11/303 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN  P  + +D T G+GG+S       S    + A D+D  A+   +E
Sbjct: 4   HTTVLLKEAVDGLNIRPDGIYVDCTLGSGGHSEYLLSRLSEHGKLFAFDQDEAAIMHARE 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  Y  Q       F  LQ+ +     K VDGV+FDLGVSS Q+D  +RGFS+Q   PL
Sbjct: 64  RLARYGRQVQFVHRNFRFLQEELSALGVKSVDGVLFDLGVSSPQLDEPERGFSYQHDAPL 123

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+    ++A+++VN    ++L RI    GEE+ + ++A  I + R++ P +TT +L 
Sbjct: 124 DMRMNRKQRLTAAEIVNCWPYEELVRIFFRYGEERFSKQVARKIEEVRRTRPIKTTGELV 183

Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  +   ++ +  HPA R FQALRI VN+E+E   + L  A + L  GG + V++FH
Sbjct: 184 DVIKAAIPAPARRSGGHPAKRIFQALRIAVNDELEAFREALEQAIELLAPGGRVSVITFH 243

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+ K+ F  AS S  +     ++P +  P V + ITKK +VP++E++  N R+RSA
Sbjct: 244 SLEDRICKETFKKASESPPLPPGLPVLPDDYRP-VLKIITKKPIVPSEEELERNHRARSA 302

Query: 310 KLR 312
           KLR
Sbjct: 303 KLR 305


>gi|253998164|ref|YP_003050227.1| S-adenosyl-methyltransferase MraW [Methylovorus sp. SIP3-4]
 gi|253984843|gb|ACT49700.1| S-adenosyl-methyltransferase MraW [Methylovorus sp. SIP3-4]
          Length = 321

 Score =  184 bits (467), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 125/317 (39%), Positives = 186/317 (58%), Gaps = 25/317 (7%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVS 72
            +  HV VLLE+ +A L   P  + +D TFG GG+SR    ++G++  ++ LDRD  AVS
Sbjct: 12  VVSPHVSVLLEEAVAALAIKPNGIYVDGTFGRGGHSRKILEQLGADGRLLGLDRDLAAVS 71

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK 129
             + +++D +  FS+    FS+L + +  +    VDGV+ DLG+SS QID G+RGFSF+ 
Sbjct: 72  AAR-SIQDPR--FSIHHHHFSELGEVLRAQDIQQVDGVLLDLGISSPQIDEGERGFSFRF 128

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA-PFQT 187
            GPLDMRM  S G +A++ + +A+ + LT ++   GEE+ A ++A AIV  R       T
Sbjct: 129 DGPLDMRMDQSRGQTAAEFLAEASEQQLTGVIKEYGEERFAKQVARAIVAARTGGDALTT 188

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T  L+ ++   +   +  +  PATR+FQALRIF+N E+EEL+  L     AL  GG L V
Sbjct: 189 TGQLAKVVAGAIPKVEPGQ-DPATRTFQALRIFLNQELEELSLVLPQCLDALAPGGRLAV 247

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK-------KVVVPTQEDV 300
           +SFHSLEDR+VK+F  S        R  +P+N  P + + + +       K + P+  ++
Sbjct: 248 ISFHSLEDRIVKRFVRSEQD-----RDDLPAN-FPVLAKDLPQPRMMAVGKPIKPSAAEI 301

Query: 301 AFNRRSRSAKLRAGMRT 317
             N RSRSA LR   RT
Sbjct: 302 KRNPRSRSAVLRVAERT 318


>gi|166031196|ref|ZP_02234025.1| hypothetical protein DORFOR_00882 [Dorea formicigenerans ATCC
           27755]
 gi|166029043|gb|EDR47800.1| hypothetical protein DORFOR_00882 [Dorea formicigenerans ATCC
           27755]
          Length = 311

 Score =  184 bits (467), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 108/303 (35%), Positives = 173/303 (57%), Gaps = 11/303 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGS--NVIALDRDPFAVSCGQE 76
           H  VLL + I  LN  P  + +D T G GG++   C+ +G   +++ +D+D  A+     
Sbjct: 5   HKSVLLNETIDGLNIKPDGIYVDGTLGGGGHAYEVCRRLGEKGSIVGIDQDAAAIEAASA 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++D+ E+ ++ ++ +  ++  + + G   VDG+V DLGVSS Q+D  +RGFS+++  PL
Sbjct: 65  RLKDFGEKVTIVRSNYCDMKSKLHELGIDKVDGIVLDLGVSSYQLDTAERGFSYREDAPL 124

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     ++A D+VN     DL R++   GE+K A  IA  IV+ R   P +TT +LS
Sbjct: 125 DMRMDTRQKMTARDIVNDYTEADLYRVIRDYGEDKFAKNIAKHIVQARAVKPVETTAELS 184

Query: 193 SLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
            +I+ ++   F K +  HPA R+FQA+RI +N E++ L   L      L  GG L +++F
Sbjct: 185 EIIRASIPMKFQKKSG-HPAKRTFQAIRIELNRELDVLRDSLDDMIDLLNPGGRLCIITF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  F              +      +    ITKK ++P++E++ +N RS+SA
Sbjct: 244 HSLEDRIVKSAFRKNENPCTCPPDFPVCVCGKKSKGSIITKKPILPSEEELEYNSRSKSA 303

Query: 310 KLR 312
           KLR
Sbjct: 304 KLR 306


>gi|307731080|ref|YP_003908304.1| S-adenosyl-methyltransferase MraW [Burkholderia sp. CCGE1003]
 gi|307585615|gb|ADN59013.1| S-adenosyl-methyltransferase MraW [Burkholderia sp. CCGE1003]
          Length = 313

 Score =  184 bits (467), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 122/311 (39%), Positives = 185/311 (59%), Gaps = 21/311 (6%)

Query: 20  HVPVLLEKVI-ALLNPAPGKVILDATFGAGGYSRSFC-KMGS--NVIALDRDPFAVSCGQ 75
           H  VLLE+ + AL+  A G V +D TFG GG+SR    K+G    +IA D+DP A++  Q
Sbjct: 7   HRTVLLEEAVEALVTRADG-VYVDGTFGRGGHSRRVLEKLGEAGRLIAFDKDPLAIATAQ 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           +       +F++   +F+ L+  + ++G++   GV+ DLGVSS Q+D  +RGFSF+  GP
Sbjct: 66  QIA---DPRFAIVHESFASLRTAIAERGIERVSGVLLDLGVSSPQVDDPERGFSFRADGP 122

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQT 187
           LDMRM  + G SA+D + +A V++LT ++   GEE+ A +IA A+V RR  +    P  +
Sbjct: 123 LDMRMDPTRGESAADWLARATVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLVS 182

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T +L+ ++   V   +  +  PATR+FQA+RI +N E+ EL   L +A   L+ GG L+V
Sbjct: 183 TGELAQIVANVVKTREKGK-DPATRTFQAIRIHINQELAELQVVLEAALSLLEQGGRLVV 241

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA--HPAVFQSITKKVVVPTQEDVAFNRR 305
           +SFHSLEDR+VK+F  + +    AV   +P  A   P+    I  ++     E VA N R
Sbjct: 242 ISFHSLEDRIVKRFMQAHA-SAPAVDRRLPIRAVDLPSPPLKIIGRIFASDAE-VAANPR 299

Query: 306 SRSAKLRAGMR 316
           +RSA +R   R
Sbjct: 300 ARSAVMRVAER 310


>gi|104783461|ref|YP_609959.1| S-adenosyl-methyltransferase MraW [Pseudomonas entomophila L48]
 gi|122401960|sp|Q1I5B0|RSMH_PSEE4 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|95112448|emb|CAK17175.1| S-adenosylmethionine methyltransferase MraW [Pseudomonas
           entomophila L48]
          Length = 315

 Score =  184 bits (467), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 118/309 (38%), Positives = 177/309 (57%), Gaps = 22/309 (7%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMG--SNVIALDRDPFAVSCGQ 75
           +H+ VLL++ +  L        LD TFG GG+SR    K+G    ++  D+DP A++ GQ
Sbjct: 8   NHITVLLDEAVEALALRADGCYLDGTFGRGGHSRLILSKLGPQGRLLGFDKDPQAIATGQ 67

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
             +     +F + Q +F++L   V  +     V G++ DLGVSS Q+D  +RGFSF   G
Sbjct: 68  -ALAAEDGRFVIVQRSFAELGAEVAGRDLAGKVSGILLDLGVSSPQLDDPERGFSFLNDG 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+ + GISA++ +  A V+++ R+    GEE+ A R+A A+V+RR+  PF  T D
Sbjct: 127 PLDMRMNPNQGISAAEFIATAPVEEIARVFKEYGEERFAGRMARAVVERREKQPFTRTAD 186

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ ++ K    +     +PATR+FQ LRI VNNE+ +L  GL +A  AL+ GG L V+SF
Sbjct: 187 LAEVL-KVANPAWEKGKNPATRAFQGLRIHVNNELGDLETGLEAALDALEVGGRLAVISF 245

Query: 251 HSLEDRLVKKFF-------ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
           HSLEDR+VK F        A    + + V+H       P +   +  K    ++ ++  N
Sbjct: 246 HSLEDRIVKLFMRKLVKGEADNLPRNLPVQH---KTFEPRI--KLIGKAQFASEAELKAN 300

Query: 304 RRSRSAKLR 312
            RSRSA +R
Sbjct: 301 PRSRSAVMR 309


>gi|325962941|ref|YP_004240847.1| S-adenosyl-methyltransferase MraW [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323469028|gb|ADX72713.1| S-adenosyl-methyltransferase MraW [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 330

 Score =  184 bits (467), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 115/301 (38%), Positives = 169/301 (56%), Gaps = 19/301 (6%)

Query: 20  HVPVLLEKVIALLNPAPG----------KVILDATFGAGGYSRSFCKMGSNV--IALDRD 67
           HVPVL ++ I LL  APG           V +DAT G GG+S +  +   ++  I +DRD
Sbjct: 12  HVPVLRDRCINLL--APGFEAARLRGETPVAIDATLGMGGHSEAMLQRFPDLHLIGIDRD 69

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRG 124
             A++   E +  +  +  L  A + ++ D + D GV    G++ DLGVSS+Q+D  +RG
Sbjct: 70  EEALALAGERLAPFAARTDLVHAVYDEIPDVLADLGVSEVHGILMDLGVSSLQLDERERG 129

Query: 125 FSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           F++    PLDMRM  S G +A+DVVN  + ++L RI+   GEEK A RIA+ IV  R   
Sbjct: 130 FAYSFDAPLDMRMDTSRGQTAADVVNTYSEEELVRIIRKWGEEKFAGRIANRIVAARAVK 189

Query: 184 PFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           PF TT +L   I+  V  S      HPA R+FQALRI VN E++ L + + +A  +L  G
Sbjct: 190 PFSTTGELVEQIRSVVPASAAKTGGHPAKRTFQALRIEVNEELDVLERAVPAAVDSLAMG 249

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G ++V+S+HSLED++VK     RS     +   +    H    +++TK   VPT  ++A 
Sbjct: 250 GRIVVMSYHSLEDKIVKGVLQGRSKSSAPLGFPVELEEHKPELKTLTKGTEVPTAVEIAE 309

Query: 303 N 303
           N
Sbjct: 310 N 310


>gi|15611713|ref|NP_223364.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori J99]
 gi|8134818|sp|Q9ZLD4|RSMH_HELPJ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|4155209|gb|AAD06233.1| putative [Helicobacter pylori J99]
          Length = 308

 Score =  184 bits (467), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 116/302 (38%), Positives = 178/302 (58%), Gaps = 16/302 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVSCGQET 77
           H  VLL++V+    P    +++D T G GG+S++    K    +I +D+D FA    +E 
Sbjct: 8   HQSVLLQEVLQAFTPLEEGILIDCTLGLGGHSKAILSQKPHLKLIGIDKDKFAQEIAKER 67

Query: 78  MRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +++++ +++L    F++  ++ +   G  + GV+ DLGVSS+Q+D  +RGF+F +S  LD
Sbjct: 68  LKEFEGRYNLLSGGFAKRFKEALEIHGERIKGVLVDLGVSSLQLDDDNRGFNF-RSHALD 126

Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM   S ++A  V+N   V  L +I    GE K+  +IAH I +RR   PF+  +DLS 
Sbjct: 127 MRMDLESELNAQKVINSYPVVALEKIFRDYGEIKEYKKIAHKIAERRAKKPFKDAKDLSE 186

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
            +      SKN +IHPAT  FQA+RI VN+E+EEL + L+ A    +A  +L V+SFHSL
Sbjct: 187 FLSS---LSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCARNLKEA--ILCVISFHSL 241

Query: 254 EDRLVKKFFASRSGKVM---AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           ED LVK  F   +   +   +      SN H A+   +TKK + P+ E++  NRRSRSAK
Sbjct: 242 EDALVKNAFKDYAKNCICDPSSFKCACSNNH-ALGAILTKKPITPSPEEIKNNRRSRSAK 300

Query: 311 LR 312
           +R
Sbjct: 301 MR 302


>gi|330877141|gb|EGH11290.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 313

 Score =  184 bits (467), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 117/307 (38%), Positives = 179/307 (58%), Gaps = 20/307 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76
           H+ VLLE+ +  L        LD TFG GG+SR     +G +  ++  D+DP A++ GQ 
Sbjct: 7   HITVLLEEAVEALAVRADGCYLDGTFGRGGHSRLILNHLGPDGRLLGFDKDPQAIATGQ- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            +     +F + Q +F++L     + G    V G++ DLGVSS Q+D  +RGFSF   GP
Sbjct: 66  ALAAEDGRFVIVQRSFAELGSQAQELGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDGP 125

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G+SA++ +  A  +++ R+    GEE+ A R+A+A+V+RR+  PF+ T DL
Sbjct: 126 LDMRMDPTRGVSAAEFIASAPAEEIARVFKEYGEERFAKRMANAVVQRREIQPFERTADL 185

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++ K    +     +PATR+FQ LRI VNNE+ +L  GL +A ++L+ GG L+V+SFH
Sbjct: 186 AEVL-KVANPAWEKGKNPATRAFQGLRIHVNNELGDLEAGLEAAMESLEIGGRLVVISFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA------FNRR 305
           SLEDR+V K F  +  K  A    +P N  P  +++   K+ +  +   A       N R
Sbjct: 245 SLEDRIV-KLFMRKLAKGEA--DNMPRNL-PIQYKAFEPKIKIHGKAQFASDVETKANPR 300

Query: 306 SRSAKLR 312
           SRSA +R
Sbjct: 301 SRSAVMR 307


>gi|89095267|ref|ZP_01168188.1| S-adenosyl-methyltransferase [Oceanospirillum sp. MED92]
 gi|89080474|gb|EAR59725.1| S-adenosyl-methyltransferase [Oceanospirillum sp. MED92]
          Length = 312

 Score =  184 bits (467), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 104/252 (41%), Positives = 154/252 (61%), Gaps = 12/252 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQ 75
           H+ VLL++ +  L        +D TFG GG+S S    G      ++ +D+DP A++   
Sbjct: 7   HITVLLDEAVDALVQDKSGFYVDGTFGRGGHS-SLVLQGLDENGRLMGIDKDPTAIAHAH 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           E  +D +E+FS+   +F+QLQ +V ++G    VDGV+ DLGVSS Q+D   RGFSF   G
Sbjct: 66  ERFKD-EERFSIAHGSFAQLQQFVTERGMDGKVDGVLLDLGVSSPQLDDASRGFSFLNDG 124

Query: 132 PLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM + SG SA++ + +A   ++  ++   GEEK + R+A AIV  R   P  TT  
Sbjct: 125 PLDMRMDTSSGESAAEWIARAEESEIADVIYTYGEEKFSRRMAKAIVNYRAETPITTTAQ 184

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ +I +     +  + +PATR+FQ +RI +N E+E+L + L  A   LK GG L+V+SF
Sbjct: 185 LAKIIAEANPAWEKGK-NPATRAFQGIRIHINKELEDLEKCLDQALDMLKVGGRLVVISF 243

Query: 251 HSLEDRLVKKFF 262
           HSLEDR+VK+F 
Sbjct: 244 HSLEDRIVKRFI 255


>gi|325980947|ref|YP_004293349.1| S-adenosyl-methyltransferase MraW [Nitrosomonas sp. AL212]
 gi|325530466|gb|ADZ25187.1| S-adenosyl-methyltransferase MraW [Nitrosomonas sp. AL212]
          Length = 308

 Score =  184 bits (467), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 121/314 (38%), Positives = 179/314 (57%), Gaps = 25/314 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGS--NVIALDRDPFAVSCGQE 76
           H PVLL   +  L   P  + +DATFG GG+SR     +G    +IALDRDP AV  G E
Sbjct: 2   HTPVLLHAAVDALALKPEGIYVDATFGRGGHSRLILSGLGECGRLIALDRDPAAVLSG-E 60

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + D  ++F +   +FS++++ +       +DGV+ DLGVSS Q++   RGFSF+ +GPL
Sbjct: 61  AITD--KRFCIRHGSFSRVREILQAMEITRIDGVLLDLGVSSPQLEDTARGFSFRSAGPL 118

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  SG  +AS+ ++  +  +L  ++   GEE+ A +IA AI+  R   P  TT  L+
Sbjct: 119 DMRMDTSGGQTASEWLSTVSESELEWVIKEYGEERFARQIARAILAARTQQPIATTLQLA 178

Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            ++   V    ++++ HPATR+FQA+RI++N E+EELA  L      L+ GG L+V+SFH
Sbjct: 179 GIVAAVVRARQRDSKRHPATRTFQAIRIYLNRELEELALVLPQCVDLLRPGGRLVVISFH 238

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITKKVVVP-------TQEDVAF 302
           SLEDR+VK+F      +  A    +P          Q  +K+ + P        + +V  
Sbjct: 239 SLEDRMVKQFI-----RAAASTDNLPRGVPVREEELQRFSKQTLRPVGRAIRSNELEVTE 293

Query: 303 NRRSRSAKLRAGMR 316
           N RSRSA +R G R
Sbjct: 294 NVRSRSAVMRVGER 307


>gi|313156840|gb|EFR56280.1| S-adenosyl-methyltransferase MraW [Alistipes sp. HGB5]
          Length = 368

 Score =  184 bits (467), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 122/307 (39%), Positives = 169/307 (55%), Gaps = 22/307 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRD-PFAVSCGQ 75
           H PVLL++ + LL   P    +D TFG GG+SR   +    G  + A D+D     +C  
Sbjct: 70  HTPVLLKESVDLLAVDPAGTYVDLTFGGGGHSRRILEKLGPGGRLYAFDQDRDTRANCPD 129

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           +    Y E    F     +L++    + VDG++ DLGVSS   D  +RGFSF+   PLDM
Sbjct: 130 DGRFHYVESNFRFLRGALRLREV---EQVDGILADLGVSSHHFDAVERGFSFRGEAPLDM 186

Query: 136 RMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM+  G ++A+ VVN      LTR+LG  GE +   +IA+ IV+ R++AP +TT  L   
Sbjct: 187 RMNQRGALTAARVVNGYPADALTRLLGEWGELETPWKIANCIVRAREAAPIETTAQLVEA 246

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           ++      K +     T+ FQALRI VN E+E L   L  + K L+ GG L+V+S+HSLE
Sbjct: 247 VKPCT--PKKDESKFLTKLFQALRIEVNGEMEALKMALEQSLKVLRPGGRLVVISYHSLE 304

Query: 255 DRLVKKF-----FASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           DRLVK F     F+    K    R + P       F+ IT+K VVPT E++  N RSRSA
Sbjct: 305 DRLVKNFLRSGNFSGSVEKDFFGRALTP-------FEIITRKAVVPTAEELERNPRSRSA 357

Query: 310 KLRAGMR 316
           KLRA  +
Sbjct: 358 KLRAAAK 364


>gi|160896909|ref|YP_001562491.1| S-adenosyl-methyltransferase MraW [Delftia acidovorans SPH-1]
 gi|263446201|sp|A9BUJ8|RSMH_DELAS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|160362493|gb|ABX34106.1| S-adenosyl-methyltransferase MraW [Delftia acidovorans SPH-1]
          Length = 309

 Score =  184 bits (467), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 130/310 (41%), Positives = 190/310 (61%), Gaps = 23/310 (7%)

Query: 20  HVPVLL-EKVIALLN----PAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAV 71
           H+ VLL E V ALL+    P  G+ + DATFG GG+SR    ++G +  ++A D+DP A+
Sbjct: 7   HITVLLDEAVDALLDGAAQPVAGQWV-DATFGRGGHSRRILQRLGPDGALLAFDKDPDAI 65

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
              +E  R    +FS+    F  L + +P   V GV+ DLGVSS QID  +RGFSF+  G
Sbjct: 66  ---EEAARITDARFSIRHEGFRHLSE-LPAGSVQGVLMDLGVSSPQIDNPERGFSFRFEG 121

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQTTQ 189
           PLDMRM  + G S +D + +A+ + +  ++   GEE+ A  IA AIV RR+S  P + T 
Sbjct: 122 PLDMRMDTTRGQSVADWLAEADAQQIAEVIRDYGEERFAGPIAKAIVARRESQGPLRNTA 181

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           +L+ L+   V   +  + +PATR+FQALRIF+N E+EEL Q L ++ + L  GG L+V+S
Sbjct: 182 ELAELVAGAVRTREAGQ-NPATRTFQALRIFINAELEELEQALEASLRVLAPGGRLVVIS 240

Query: 250 FHSLEDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           FHSLEDR+VK+F A  S +V   R    +P+   P   +++ +  + P++ +VA N RSR
Sbjct: 241 FHSLEDRIVKQFIAKHSKEVYDRRAPFAVPT---PMRLEALGR--IKPSEAEVAANARSR 295

Query: 308 SAKLRAGMRT 317
           SA +R   RT
Sbjct: 296 SAVMRVARRT 305


>gi|254557010|ref|YP_003063427.1| cell division protein MraW [Lactobacillus plantarum JDM1]
 gi|254045937|gb|ACT62730.1| cell division protein MraW [Lactobacillus plantarum JDM1]
          Length = 319

 Score =  184 bits (467), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 118/307 (38%), Positives = 170/307 (55%), Gaps = 13/307 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MG--SNVIALDRDPFAVSCGQ 75
           +H  VLL + IA LN  P  + +D T G GG+SR   + +G   ++ + D+D  A+   Q
Sbjct: 5   EHTTVLLHEAIAALNVRPDGIYVDCTLGGGGHSREILQQLGPEGHLYSFDQDQTAIDYNQ 64

Query: 76  ETMRDYKE--QFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
             +  Y E  Q +  ++ F+ L+  +  +G   VDGVV+DLGVSS Q D   RGFS+Q  
Sbjct: 65  SNLATYLERGQVTFIKSNFANLKTELNARGLDHVDGVVYDLGVSSPQFDDAARGFSYQHD 124

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM  S  ++A  VVN     DL RI    GEEK + ++A  I + R   P  TT 
Sbjct: 125 APLDMRMDQSQKLTAQTVVNTWPYADLVRIFYRYGEEKFSKQVARLIERERVVQPIVTTG 184

Query: 190 DLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L  +I+  +   ++    HPA R FQA+RI VNNE+  L   L  A   +   G + V+
Sbjct: 185 QLVEIIKNAIPARARRTGGHPAKRVFQAIRIAVNNELGVLETSLEQAIDLINVHGRVSVI 244

Query: 249 SFHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           +F SLEDRLVK  F   S   ++     +IP+   P  ++ +++K VVP+  ++  NRR+
Sbjct: 245 TFQSLEDRLVKTIFKEHSDLPELPPGLPVIPAEMQPD-YRLVSRKPVVPSDAEIEANRRA 303

Query: 307 RSAKLRA 313
           RSAKLRA
Sbjct: 304 RSAKLRA 310


>gi|171742509|ref|ZP_02918316.1| hypothetical protein BIFDEN_01621 [Bifidobacterium dentium ATCC
           27678]
 gi|283456404|ref|YP_003360968.1| mraW S-adenosyl-methyltransferase mraW [Bifidobacterium dentium
           Bd1]
 gi|306822422|ref|ZP_07455800.1| S-adenosyl-methyltransferase MraW [Bifidobacterium dentium ATCC
           27679]
 gi|309802480|ref|ZP_07696586.1| S-adenosyl-methyltransferase MraW [Bifidobacterium dentium
           JCVIHMP022]
 gi|171278123|gb|EDT45784.1| hypothetical protein BIFDEN_01621 [Bifidobacterium dentium ATCC
           27678]
 gi|283103038|gb|ADB10144.1| mraW S-adenosyl-methyltransferase mraW [Bifidobacterium dentium
           Bd1]
 gi|304553967|gb|EFM41876.1| S-adenosyl-methyltransferase MraW [Bifidobacterium dentium ATCC
           27679]
 gi|308220880|gb|EFO77186.1| S-adenosyl-methyltransferase MraW [Bifidobacterium dentium
           JCVIHMP022]
          Length = 343

 Score =  184 bits (467), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 115/306 (37%), Positives = 169/306 (55%), Gaps = 13/306 (4%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74
           H PVLL + + L+ PA   PG V +D T G  G+S +F K    + +I +DRD  A++  
Sbjct: 8   HQPVLLRECVDLVAPALAKPGAVAVDCTLGLAGHSTAFLKASPEARLIGIDRDVEALALA 67

Query: 75  QETMRD--YKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK 129
              M      E+F    A F +    + D+    VD V  DLG+SS+QID  +RGFS+  
Sbjct: 68  TRRMEQEGLAERFIPVHAAFDEFAHVLEDRNIDVVDAVFMDLGLSSLQIDETERGFSYSH 127

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM  +  ++A  V+++ +  DL RI    GEE+ + +IA  IV+RR++ P  T+
Sbjct: 128 DAPLDMRMDVTQPLTARQVLSEYSFADLVRIFRTYGEERFSKQIAREIVRRRETEPLTTS 187

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ L+ + V  +     +PA R FQALRI VN E+++LA  L      L  GG L+V 
Sbjct: 188 GQLNRLVDEVVPQAHRPAGNPAKRVFQALRIEVNGELDKLAGTLPQIANHLAVGGRLVVE 247

Query: 249 SFHSLEDRLVKKFFA-SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           S+HSLED+ VK F A      V A   +IP +  P  F+ +T+  +   + ++A N RS 
Sbjct: 248 SYHSLEDKTVKTFMAQGLKADVPADMPVIPPDMQP-FFKELTRGAIKADETEIAMNPRSA 306

Query: 308 SAKLRA 313
           S +LRA
Sbjct: 307 SVRLRA 312


>gi|92114320|ref|YP_574248.1| methyltransferase [Chromohalobacter salexigens DSM 3043]
 gi|123265653|sp|Q1QVF9|RSMH_CHRSD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|91797410|gb|ABE59549.1| methyltransferase [Chromohalobacter salexigens DSM 3043]
          Length = 331

 Score =  184 bits (466), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 119/302 (39%), Positives = 174/302 (57%), Gaps = 13/302 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H  VLL+  +  L   P    LD TFG GG+SR+  +  S    ++A+DRDP A++ G  
Sbjct: 28  HASVLLDGAVEALMTDPDGCYLDGTFGRGGHSRAILQRLSPQGRLLAIDRDPAALAEGA- 86

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           T  D +  F+L    F++L D   D    + + GV+ D+GVSS Q+D   RGFSF + GP
Sbjct: 87  TWDDPR--FTLRHGRFAELDDIARDAALHRRLSGVLLDVGVSSPQLDDASRGFSFLRDGP 144

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G SA+D + + + +D++ +    GEE+ A RIA AIV RR   P   T DL
Sbjct: 145 LDMRMDPTQGESAADWLARVSERDMSDVFKRYGEERFARRIAKAIVARRGERPITHTADL 204

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + L+ K  + +     HPATR FQA+RI VN E+++L   L +A ++L  GG L+V+SFH
Sbjct: 205 AELV-KAAHPAWEKGKHPATRVFQAIRIHVNGELDQLEAALAAALESLAPGGRLVVISFH 263

Query: 252 SLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDRLVK+F   +  G     R +   +       ++  K   P ++++A N R+RSA 
Sbjct: 264 SLEDRLVKRFIRDKVRGDTHLPRDLPIRDTQLNRRLAMVGKARRPDEDEIALNPRARSAV 323

Query: 311 LR 312
           +R
Sbjct: 324 MR 325


>gi|119026127|ref|YP_909972.1| S-adenosyl-methyltransferase MraW [Bifidobacterium adolescentis
           ATCC 15703]
 gi|263445943|sp|A1A2F7|RSMH_BIFAA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|118765711|dbj|BAF39890.1| S-adenosyl-methyltransferase [Bifidobacterium adolescentis ATCC
           15703]
          Length = 343

 Score =  184 bits (466), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 116/307 (37%), Positives = 171/307 (55%), Gaps = 15/307 (4%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSN--VIALDRD--PFAVS 72
           H PVLL   + L+ PA   PG + +D T G  G+S +F K   N  +I +DRD    A++
Sbjct: 8   HQPVLLRDCVDLVAPALAKPGSIAVDCTLGLAGHSTAFLKASPNARLIGIDRDTEALALA 67

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQK 129
             +  M    ++F+   A F      + D+GVD    V  DLG+SS+QID  +RGFS+  
Sbjct: 68  TKRMEMEGLADRFTPVHAAFDDFSQVLSDQGVDKVNAVFMDLGLSSLQIDETERGFSYSH 127

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM  +  ++A  V+ + +  DL RI    GEE+ + +IA  IV+RR++ P  T+
Sbjct: 128 DAPLDMRMDVTQPLTAEQVLAEYSFADLVRIFRAYGEERFSKQIAREIVRRRETEPLTTS 187

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ L+ + V  +     +PA R FQALRI VN E+++LA  L      L  GG L+V 
Sbjct: 188 GQLNRLVDEVVPQAHRPAGNPAKRVFQALRIEVNGELDKLAGTLPQIANHLAVGGRLVVE 247

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           S+HSLED+ VK F  ++  KV A   M  +P +  P  F+ +T+  +    E++A N RS
Sbjct: 248 SYHSLEDKTVKAFM-NQGLKVDAPADMPVVPPDMMP-FFKELTRGAIKADAEEIANNPRS 305

Query: 307 RSAKLRA 313
            S +LRA
Sbjct: 306 ASVRLRA 312


>gi|312871660|ref|ZP_07731752.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LEAF
           3008A-a]
 gi|311092885|gb|EFQ51237.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LEAF
           3008A-a]
          Length = 315

 Score =  184 bits (466), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 119/312 (38%), Positives = 176/312 (56%), Gaps = 17/312 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H  VLL + I  LN     V +DATFG GG++    K  SN  +I  D+D +A+   +++
Sbjct: 5   HYSVLLHETIDNLNLKNDGVYVDATFGGGGHASYLLKQLSNGHLIGFDQDEYAIELAKKS 64

Query: 78  MRDY-----KEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             +      K Q SL    F  LQ  +       G+DG+ +DLGVSS Q D  +RGFS++
Sbjct: 65  FSEVLKANSKPQLSLVHDNFGNLQQNLAKLGFIDGIDGIYYDLGVSSPQFDQPERGFSYR 124

Query: 129 KSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
            +  LDMRM     + A  +VN  + K+L+ IL   G+EK A +IA  IV +R   P  T
Sbjct: 125 FNARLDMRMDQTKDLDAYKIVNTWSQKELSNILFKYGDEKYARQIAKNIVAKRAIKPITT 184

Query: 188 TQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T +L  +I++ +  F++    HPA +SFQA+RI VN+E+E L + L  A + LK GG + 
Sbjct: 185 TFELVDIIKEAIPAFARRTGGHPAKKSFQAIRIAVNDELEVLEKSLLEAIEILKPGGRIC 244

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           V++F SLED++VKK F   S  V   R M  +P +  P + + I++K +V T +++  N 
Sbjct: 245 VITFQSLEDKIVKKIFKKYSD-VDIPRGMPQVPDSLKPTL-KIISRKPIVATNKELEENN 302

Query: 305 RSRSAKLRAGMR 316
           RS SAKLR   +
Sbjct: 303 RSHSAKLRVAEK 314


>gi|260881846|ref|ZP_05405354.2| S-adenosyl-methyltransferase MraW [Mitsuokella multacida DSM 20544]
 gi|260847818|gb|EEX67825.1| S-adenosyl-methyltransferase MraW [Mitsuokella multacida DSM 20544]
          Length = 330

 Score =  184 bits (466), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 112/302 (37%), Positives = 163/302 (53%), Gaps = 9/302 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H+ V+LE+ +  L      + +D T G  G+S    ++ S    +I +D+D  A+   +E
Sbjct: 10  HISVMLEETVKGLVTNKEGIYVDCTLGGAGHSHRIAELLSPKGRIIGIDQDEEAIEAAKE 69

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++D K +  +  + FS L++ +  +G   VDGVVFDLGVSS QID  +RGFS+    PL
Sbjct: 70  RLKDVKCRVDIVHSNFSHLEEILEAQGAPLVDGVVFDLGVSSHQIDTAERGFSYMHDAPL 129

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM      SA DVVN  + K+L RI    GEE+   RIA  IVK R   P + T +L 
Sbjct: 130 DMRMDPEAKFSAYDVVNTYSEKELDRIFHDYGEERWGRRIAQFIVKERMKKPIERTGELV 189

Query: 193 SLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
            +I K V     +    HPA R FQA+RI VN+E+  L +  R+A   LK GG + +++F
Sbjct: 190 DIICKAVPKAVRQAANGHPAKRIFQAIRIEVNDELGILEKAFRTAVHHLKPGGRIAIITF 249

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDR+ K+     +   +    +     H      +  K    T +++A N RS+SAK
Sbjct: 250 HSLEDRIAKQTLKEMARGCICPPELPVCVCHHKPEIRLLGKPKQATADELAHNSRSKSAK 309

Query: 311 LR 312
           LR
Sbjct: 310 LR 311


>gi|220904376|ref|YP_002479688.1| S-adenosyl-methyltransferase MraW [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|263447319|sp|B8IZT3|RSMH_DESDA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|219868675|gb|ACL49010.1| S-adenosyl-methyltransferase MraW [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 327

 Score =  184 bits (466), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 126/329 (38%), Positives = 175/329 (53%), Gaps = 18/329 (5%)

Query: 7   KTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIAL 64
           +TMS     T   HV VL  + +A L+P  G   LD T G GG++ +      G  +  L
Sbjct: 3   QTMSDTTEPT--RHVSVLPVETLAALDPRAGGRYLDGTLGMGGHASAILSSAPGIELCGL 60

Query: 65  DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCG 121
           DRD  A++   + +  +  +  LF   +S   + + + G   VDG + D+GVSS+Q+D  
Sbjct: 61  DRDEEALALAGQRLSSFGGRAHLFHCRYSDFAEALNELGWDKVDGALLDIGVSSLQLDEA 120

Query: 122 DRGFSFQKSGPLDMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
           +RGFSF   GPLDMRM  + +  SA   VN+ +   L   +  LGEE QA RIA AIV  
Sbjct: 121 ERGFSFYGDGPLDMRMDQNSAQPSAWHWVNRESFDKLKDCIATLGEEPQAGRIARAIVDA 180

Query: 180 RQSAPFQTTQDLSSLIQKT--VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
           RQ     TT  L++L+++     +    R HPATR+FQALR+ VN+E+ EL + L     
Sbjct: 181 RQKNTIDTTGQLAALVERAYPAAWRAKARRHPATRTFQALRMAVNDELGELRRFLDQILT 240

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVP 295
            L  GG L V++FHSLEDR+VK+            RH IP     H    + + KK V  
Sbjct: 241 WLPIGGRLAVITFHSLEDRMVKQAMRHWVEGCRCPRH-IPRCICGHQPEVRILHKKPVQA 299

Query: 296 TQEDVAFNRRSRSAKLRAGMRTVERSIED 324
             E++A N R+ SAKLRA    VE+  ED
Sbjct: 300 GPEELAANSRAGSAKLRA----VEKIAED 324


>gi|171778125|ref|ZP_02919382.1| hypothetical protein STRINF_00217 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171283107|gb|EDT48531.1| hypothetical protein STRINF_00217 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 339

 Score =  184 bits (466), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 118/323 (36%), Positives = 179/323 (55%), Gaps = 19/323 (5%)

Query: 6   CKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VI 62
            K M+   HH     + VLL + + +L+  P  + +DAT G  G+S     K+G N  + 
Sbjct: 21  MKGMTKDFHH-----ITVLLHETVDMLDIEPDGIYVDATLGGAGHSEYLLSKLGPNGHLY 75

Query: 63  ALDRDPFAVSCGQETMRDYKE--QFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQ 117
           A D+D  A+   Q  ++DY E  Q +  +  F  L   +   GV   DG+++DLGVSS Q
Sbjct: 76  AFDQDQTAIDNAQIRLKDYIEKGQVTFIKDNFRNLASNLAMHGVTEIDGILYDLGVSSPQ 135

Query: 118 IDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
           +D  +RGFS++K  PLDMRM+    ++A DVVN  +  DL RI    GE+K + +IA  I
Sbjct: 136 LDERERGFSYKKDAPLDMRMNREQDLTAYDVVNTYDYYDLVRIFYKYGEDKFSKQIARKI 195

Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRS 234
            + RQ  P +TT +L+ +I K+   +K    + HPA + FQA+RI VN+E+    + ++ 
Sbjct: 196 EQARQEKPIETTTELAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQ 254

Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVV 293
           A   L   G + V++FHSLEDRL K+ F   S  +V      IP +  P +   + +K +
Sbjct: 255 AIDLLAVDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDMQPKL-TLVNRKPI 313

Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316
           +P QE++  N RS SAKLR   +
Sbjct: 314 LPRQEELEANNRSHSAKLRVARK 336


>gi|325662359|ref|ZP_08150968.1| ribosomal RNA small subunit methyltransferase H 2 [Lachnospiraceae
           bacterium 4_1_37FAA]
 gi|331086162|ref|ZP_08335244.1| ribosomal RNA small subunit methyltransferase H 2 [Lachnospiraceae
           bacterium 9_1_43BFAA]
 gi|325471361|gb|EGC74584.1| ribosomal RNA small subunit methyltransferase H 2 [Lachnospiraceae
           bacterium 4_1_37FAA]
 gi|330406321|gb|EGG85835.1| ribosomal RNA small subunit methyltransferase H 2 [Lachnospiraceae
           bacterium 9_1_43BFAA]
          Length = 316

 Score =  184 bits (466), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 109/313 (34%), Positives = 172/313 (54%), Gaps = 11/313 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H  VLLE+ +  LN  P  + +D T G GG++   CK  ++    I +D+D  A+     
Sbjct: 5   HKSVLLEETVNGLNIKPDGIYVDGTLGGGGHAEEVCKQLNDKGSFIGIDQDAAAIEAASV 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  + E+ ++ ++ +  ++  + ++G   VDG++ DLGVSS Q+D  +RGFS++   PL
Sbjct: 65  RLAGFGERVTIIRSNYCDMKSRLRERGIDKVDGIILDLGVSSYQLDTAERGFSYRVDAPL 124

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM      +A D+VN  +  +L RI+   GE+K A  IA  IV  R+ AP +TT  L 
Sbjct: 125 DMRMDRRQEKTARDIVNTYSEMELFRIIRDYGEDKFAKNIAKHIVMEREKAPIETTGQLC 184

Query: 193 SLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
            +I+  +   F KN   HPA R+FQA+RI +N E+E L   L    + L   G + +++F
Sbjct: 185 EIIRHAIPMKFQKNTG-HPAKRTFQAIRIELNRELEVLRDTLDEMIELLNDNGRICIITF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  F           H  +    + +  + ITKK ++P ++++  N RS+SA
Sbjct: 244 HSLEDRIVKGIFKKNENPCTCPSHFPVCVCGNVSKGKVITKKPILPGEQELEENSRSKSA 303

Query: 310 KLRAGMRTVERSI 322
           KLR   R V   +
Sbjct: 304 KLRIFERHVNTKV 316


>gi|257066696|ref|YP_003152952.1| S-adenosyl-methyltransferase MraW [Anaerococcus prevotii DSM 20548]
 gi|256798576|gb|ACV29231.1| S-adenosyl-methyltransferase MraW [Anaerococcus prevotii DSM 20548]
          Length = 306

 Score =  184 bits (466), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 115/311 (36%), Positives = 168/311 (54%), Gaps = 22/311 (7%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
           +H+PVL ++ I  LN  P  + LD T G GG+S+   +  S+   +IA+D+D  A+   +
Sbjct: 4   EHIPVLAKETIENLNINPDGIYLDLTLGKGGHSKMILERLSDKGRLIAIDQDKEAIEAAK 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E +RD+    +   + F   +  + D G   +DG + D+GVSS QID  DRGFS+ K GP
Sbjct: 64  ENLRDFS-NVTFVNSNFENFEKALEDLGLDLIDGALMDIGVSSYQIDNADRGFSYMKDGP 122

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+    ++A  +VN+ +  +L RI    GEE+ A  IA  IV  R      TT  L
Sbjct: 123 LDMRMNQDNELTAEVIVNEYSQDELERIFFEYGEERFARAIARNIVNLRDEERIDTTFKL 182

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             ++ K++   K+   HP  R FQALRI VN E+E L   +      LK  G + +++FH
Sbjct: 183 REIVAKSI---KSQDAHPEKRVFQALRIEVNRELEVLENTIERVVDHLKKDGRIAIITFH 239

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSN------AHPAVFQSITKKVVVPTQEDVAFNRR 305
           SLEDR+VK  F     K +A   + P         H A  + IT+K V  ++ ++  N R
Sbjct: 240 SLEDRIVKNKF-----KDLARDCICPPEFPVCVCDHRAKIKIITRKPVTASKAELRDNSR 294

Query: 306 SRSAKLRAGMR 316
           S+ AKLR G R
Sbjct: 295 SKPAKLRVGQR 305


>gi|78065113|ref|YP_367882.1| S-adenosyl-methyltransferase MraW [Burkholderia sp. 383]
 gi|88909190|sp|Q39JX8|RSMH_BURS3 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|77965858|gb|ABB07238.1| methyltransferase [Burkholderia sp. 383]
          Length = 313

 Score =  184 bits (466), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 120/311 (38%), Positives = 183/311 (58%), Gaps = 21/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  + +D TFG GG+SR+       G  +IA D+DP A+   Q 
Sbjct: 7   HRTVLLDEAVESLVTRPDGIYVDGTFGRGGHSRAVLARLAPGGRLIAFDKDPRAIETAQ- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + D +  FS+   +F+ ++D +  +GV+   GV+ DLGVSS Q+D   RGFSF+  GPL
Sbjct: 66  GIEDAR--FSIVHDSFASMRDALAARGVEKVSGVLLDLGVSSPQVDDPARGFSFRADGPL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTT 188
           DMRM  + G SA++ + +A+V++LT ++   GEE+ A +IA A+V RR  +    P  TT
Sbjct: 124 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDTT 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ ++   V   +  +  PATR+FQA+RI VN E+ +L   L +A   L+ GG L+V+
Sbjct: 184 GELAQIVGHVVKTREKGK-DPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVI 242

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNRR 305
           SFHSLEDR+VK+F  + +    AV   +P  A      S   K++    P++ +VA N R
Sbjct: 243 SFHSLEDRIVKRFMQAHA-SAPAVDRRLPIRA--VDLPSPPLKIISRQFPSEAEVAANPR 299

Query: 306 SRSAKLRAGMR 316
           +RSA +R   R
Sbjct: 300 ARSAVMRIAER 310


>gi|154488900|ref|ZP_02029749.1| hypothetical protein BIFADO_02209 [Bifidobacterium adolescentis
           L2-32]
 gi|154083037|gb|EDN82082.1| hypothetical protein BIFADO_02209 [Bifidobacterium adolescentis
           L2-32]
          Length = 343

 Score =  184 bits (466), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 116/307 (37%), Positives = 171/307 (55%), Gaps = 15/307 (4%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSN--VIALDRD--PFAVS 72
           H PVLL   + L+ PA   PG + +D T G  G+S +F K   N  +I +DRD    A++
Sbjct: 8   HQPVLLRDCVDLVAPALAKPGSIAVDCTLGLAGHSTAFLKASPNARLIGIDRDTEALALA 67

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQK 129
             +  M    ++F+   A F      + D+GVD    V  DLG+SS+QID  +RGFS+  
Sbjct: 68  TKRMEMDGLADRFTPVHAAFDDFSQVLSDQGVDKVNAVFMDLGLSSLQIDETERGFSYSH 127

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM  +  ++A  V+ + +  DL RI    GEE+ + +IA  IV+RR++ P  T+
Sbjct: 128 DAPLDMRMDVTQPLTAEQVLAEYSFADLVRIFRTYGEERFSKQIAREIVRRRETEPLTTS 187

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ L+ + V  +     +PA R FQALRI VN E+++LA  L      L  GG L+V 
Sbjct: 188 GQLNRLVDEVVPQAHRPAGNPAKRVFQALRIEVNGELDKLAGTLPQIANHLAVGGRLVVE 247

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           S+HSLED+ VK F  ++  KV A   M  +P +  P  F+ +T+  +    E++A N RS
Sbjct: 248 SYHSLEDKTVKAFM-NQGLKVDAPADMPVVPPDMMP-FFKELTRGAIKADAEEIANNPRS 305

Query: 307 RSAKLRA 313
            S +LRA
Sbjct: 306 ASVRLRA 312


>gi|187479357|ref|YP_787382.1| S-adenosyl-methyltransferase MraW [Bordetella avium 197N]
 gi|123738495|sp|Q2KVE4|RSMH_BORA1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|115423944|emb|CAJ50496.1| S-adenosyl-methyltransferase [Bordetella avium 197N]
          Length = 355

 Score =  184 bits (466), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 126/331 (38%), Positives = 185/331 (55%), Gaps = 37/331 (11%)

Query: 19  DHVPVLLEKVI-----------------------ALLNPAPGKVILDATFGAGGYSRSFC 55
           +H PVLLE  +                       AL   A G + +D TFG GG+SR   
Sbjct: 4   EHRPVLLEPTVDALLQADFGGRGASRARPRDEAAALTRQATG-IFVDGTFGRGGHSRELL 62

Query: 56  -KMG--SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVF 109
            ++G  + ++  D+DP A++  Q    +   + ++    F+ + + +  +G+   DGV+ 
Sbjct: 63  GRLGPQARLVVFDKDPEAIAVAQALAAE-DARVTVVHGGFATMTEELAARGIERIDGVML 121

Query: 110 DLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQ 168
           DLGVSS QID  DRGFSF + GPLDMRM  S G + +D + QA+V+++  ++   GEE+ 
Sbjct: 122 DLGVSSPQIDDADRGFSFMREGPLDMRMDTSRGPTVADWLAQASVEEMREVIADYGEERF 181

Query: 169 ASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEEL 228
           A ++A AI  RR + P  TT +L+  +   V   +  + HPATR+FQALRI++N E+EEL
Sbjct: 182 AFQVAKAIAARRATRPLHTTLELAECVASAVRTREKGQ-HPATRTFQALRIYINRELEEL 240

Query: 229 AQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQ 286
           A+ L SA + L  GG L V+SFHSLEDR+VK+  A+ +    A   +    S     + Q
Sbjct: 241 ARALASAIELLVPGGRLAVISFHSLEDRMVKQCIAAAARPAAAHPRLPLRESELPQPILQ 300

Query: 287 SITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           ++ K  VV    +VA N RSRSA LRA  RT
Sbjct: 301 TLGK--VVADDAEVAGNARSRSAILRAAERT 329


>gi|300088323|ref|YP_003758845.1| S-adenosyl-methyltransferase MraW [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299528056|gb|ADJ26524.1| S-adenosyl-methyltransferase MraW [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 356

 Score =  184 bits (466), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 113/302 (37%), Positives = 173/302 (57%), Gaps = 21/302 (6%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69
           + HT  DH PV+L + +  L   PG   +D T GAGG++R+   M   G  ++ LD DP 
Sbjct: 1   MSHT--DHTPVMLRESLQALAVGPGGRYVDGTTGAGGHARAILDMSAPGGQLLGLDADPE 58

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQ------DYVPDKGVDGVVFDLGVSSMQIDCGDR 123
           ++    E +  Y+  F L  A FS+++      D+ P   V G++ DLG++SMQ+    R
Sbjct: 59  SLKIASENLSGYEGSFRLVNANFSRMEEICRQYDFYP---VHGIILDLGLASMQLTETGR 115

Query: 124 GFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GFSFQ   PLDMR S    ++A+++VN  +  ++  IL   GEE+++  IA  IV+ R  
Sbjct: 116 GFSFQYDAPLDMRFSPDQKLTAAEIVNTWSETEIADILYRYGEERRSRAIARRIVESR-- 173

Query: 183 APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
            P +TT  L++L+ KT+   ++  IHPATR+FQALRI VN+E+  L   L  A + L   
Sbjct: 174 -PLKTTTQLANLVAKTI--GRSGDIHPATRTFQALRIAVNDELARLEDTLDQAVRLLGYS 230

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSN-AHPAVFQSITKKVVVPTQEDVA 301
           G L+V+++HSLEDR+VK+FF   +   +    +      H A  + + +KV+ PT E+V 
Sbjct: 231 GRLVVIAYHSLEDRIVKQFFQREATDCVCPVELPECRCGHVARLRVLNRKVMTPTDEEVR 290

Query: 302 FN 303
            N
Sbjct: 291 AN 292


>gi|139437204|ref|ZP_01771364.1| Hypothetical protein COLAER_00343 [Collinsella aerofaciens ATCC
           25986]
 gi|133776851|gb|EBA40671.1| Hypothetical protein COLAER_00343 [Collinsella aerofaciens ATCC
           25986]
          Length = 321

 Score =  184 bits (466), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 119/314 (37%), Positives = 175/314 (55%), Gaps = 22/314 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV------IALDRDPFAV-S 72
           H PV+L +V+  L    G V+ D T G  G+S    KM + V      + +D+D  A+ +
Sbjct: 12  HEPVMLGEVLESLRLKSGSVVCDCTLGGAGHS---VKMAAQVGETGLLLGVDQDDMALEA 68

Query: 73  CGQETMRDYKE-QFSLFQATFSQLQDY-----VPDKGVDGVVFDLGVSSMQIDCGDRGFS 126
            G    R+       L +  F  L +      VP  GVDG +FDLGVSS Q+D   RGFS
Sbjct: 69  AGARLDREVPGVPHQLLKGNFGDLDELLCSAEVP--GVDGFLFDLGVSSPQLDIPGRGFS 126

Query: 127 FQKSGPLDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           + +  PLDMRM      ++A++V+N  N  DL RIL + GEEK AS+IA  IV+RR+  P
Sbjct: 127 YNEDAPLDMRMDPGNNTLNAAEVINTYNEHDLARILRVYGEEKFASQIAREIVRRREQEP 186

Query: 185 FQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
            +TT     +I+  +   ++ +  HPA +SFQA+RI VN+E++ L +GL +A + L  GG
Sbjct: 187 IETTGQFVEIIKAGIPAAARRHGGHPAKKSFQAIRIEVNHELDVLERGLDAATRWLNPGG 246

Query: 244 LLIVVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
            + V+S+HSLEDR+VK  F   S G        +    +  + + IT+K +V   ++V  
Sbjct: 247 RICVISYHSLEDRIVKNHFKEMSQGCTCPPEIPVCVCGNVPILKVITRKPLVAQPDEVER 306

Query: 303 NRRSRSAKLRAGMR 316
           N R+RSAK+R   R
Sbjct: 307 NPRARSAKIRVAQR 320


>gi|54293889|ref|YP_126304.1| hypothetical protein lpl0945 [Legionella pneumophila str. Lens]
 gi|54296934|ref|YP_123303.1| S-adenosyl-methyltransferase MraW [Legionella pneumophila str.
           Paris]
 gi|68565457|sp|Q5WXZ4|RSMH_LEGPL RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|68565459|sp|Q5X6J0|RSMH_LEGPA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|68565463|sp|Q5ZX19|RSMH_LEGPH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|53750719|emb|CAH12126.1| hypothetical protein lpp0975 [Legionella pneumophila str. Paris]
 gi|53753721|emb|CAH15179.1| hypothetical protein lpl0945 [Legionella pneumophila str. Lens]
          Length = 308

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 119/312 (38%), Positives = 173/312 (55%), Gaps = 18/312 (5%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSC 73
           +  H  VLL + I  L      +  D TFG GG+SR      S+   + A+D+D  AV  
Sbjct: 1   MAKHQSVLLHESIKGLAIKADGIYFDGTFGRGGHSREILNHLSDKGRLFAIDKDLDAV-- 58

Query: 74  GQETMRDY---KEQFSLFQATFSQLQDYVPDKGV----DGVVFDLGVSSMQIDCGDRGFS 126
             +  +DY    ++F +F  +F+Q++++    GV    DG++ DLGVSS Q+D  +RGFS
Sbjct: 59  --QYAKDYFGLDKRFQIFHGSFAQIKEFASQAGVIGAVDGILLDLGVSSPQLDNPERGFS 116

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           F   GPLDMRM  +  I+A++ VN+A V +L  +    GEE+ A RIA AIV  R+  P 
Sbjct: 117 FMLQGPLDMRMDLTQSINAANFVNEAEVNELAHVFRAYGEERFAGRIAKAIVDARKLKPI 176

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            TT +L+ ++++     + ++ HPATR FQA+RI VN E+ +L+  L      L  GG L
Sbjct: 177 TTTLELAEIVKEANPKWEKHK-HPATRVFQAIRIHVNQELTDLSNCLEQCLDVLGPGGRL 235

Query: 246 IVVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
            V+SFHSLEDR+VK+F   +  G    V   I        F+ +  K V P   ++  N 
Sbjct: 236 AVISFHSLEDRIVKQFMRDKEQGNRPPVEVPIKYEELKTNFKKVG-KAVKPQSSEIKENV 294

Query: 305 RSRSAKLRAGMR 316
           RSRSA LR G +
Sbjct: 295 RSRSAVLRIGEK 306


>gi|187779894|ref|ZP_02996367.1| hypothetical protein CLOSPO_03490 [Clostridium sporogenes ATCC
           15579]
 gi|187773519|gb|EDU37321.1| hypothetical protein CLOSPO_03490 [Clostridium sporogenes ATCC
           15579]
          Length = 309

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 116/305 (38%), Positives = 165/305 (54%), Gaps = 9/305 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+ VLLE+ I  LN     + +D T G GG+S+   K  S+   +I +D+D  A+   +E
Sbjct: 5   HISVLLEETIDSLNIKEDGIYVDCTLGGGGHSKEILKKLSHKGKLIGIDQDTSALKAAKE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++DY E        F  +   + +   + VDG+V DLGVSS Q+D   RGFS+ K  PL
Sbjct: 65  RLKDY-ENVIYVHNNFYNIDSILEELDIEKVDGIVMDLGVSSYQLDEASRGFSYMKDAPL 123

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+     SA DVVN    ++L +IL   GEEK + +IA  IV+RR     +TT +L 
Sbjct: 124 DMRMNRDENFSAYDVVNSYGEEELFKILKNYGEEKFSRKIARFIVERRTEKSIETTGELV 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I+K +        HPA R+FQA+RI VN E++ L + +  +   L   G L +++FHS
Sbjct: 184 EIIKKAIPAKFQREGHPAKRTFQAIRIEVNKELQILNKAIEDSVNRLNKDGRLSIITFHS 243

Query: 253 LEDRLVK-KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK KF              I         + ITKK + P++E+   N RSRSAKL
Sbjct: 244 LEDRIVKVKFKELEKPCTCPPSFPICVCGKKPQIKIITKKPMEPSKEEKEINSRSRSAKL 303

Query: 312 RAGMR 316
           R   R
Sbjct: 304 RVCRR 308


>gi|227509375|ref|ZP_03939424.1| S-adenosyl-methyltransferase [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227191087|gb|EEI71154.1| S-adenosyl-methyltransferase [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 315

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 111/309 (35%), Positives = 174/309 (56%), Gaps = 12/309 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77
           HV VLL + +  L+  P    +DAT G GG++    K     ++ + D+D  A+S  Q+ 
Sbjct: 6   HVTVLLHEAVDGLDVDPNGTYVDATLGGGGHTTEILKRIDKGHLYSFDQDEEAISYNQQH 65

Query: 78  MRDYKE--QFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           +R Y E  + +L    F  ++  + D+G+   DG+V+DLGVSS Q D   RGFS++    
Sbjct: 66  LRQYVENDKLTLIHDNFRNIKGALADRGISKIDGIVYDLGVSSPQFDEAGRGFSYRFEAR 125

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM     + A  V+N+   + L RI    GEEK + +IA  I + R+  P  TT DL
Sbjct: 126 LDMRMDQDNPVDAWKVINEWPYEKLVRIFYRYGEEKFSKQIARRIERTREDHPINTTTDL 185

Query: 192 SSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
            +LI++ +   ++ +  HPA + FQA+RI VN+E+  L   L  + + L  GG + V++F
Sbjct: 186 VTLIKEAIPAAARRHGGHPAKKVFQAVRIAVNDELSALEDSLEQSLELLAVGGRISVITF 245

Query: 251 HSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
            SLEDRLVK  F  ++   ++     +IP    P  ++ IT+K ++P ++++A N R+ S
Sbjct: 246 QSLEDRLVKTMFKEKASLPELPPNLPVIPKELQPK-YKLITRKPIIPNEDELADNHRAHS 304

Query: 309 AKLRAGMRT 317
           AKLR   RT
Sbjct: 305 AKLRIIERT 313


>gi|261378431|ref|ZP_05983004.1| S-adenosyl-methyltransferase MraW [Neisseria cinerea ATCC 14685]
 gi|269145209|gb|EEZ71627.1| S-adenosyl-methyltransferase MraW [Neisseria cinerea ATCC 14685]
          Length = 319

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 122/311 (39%), Positives = 174/311 (55%), Gaps = 20/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQE 76
           H+ VLL + +  L      V +D TFG GG+SR    ++G    +I  D+DP A++  +E
Sbjct: 9   HITVLLHEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDTGRLIVFDKDPQAIAVAEE 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             R  K + S+    F+  Q  + D G   VDG +FDLGVSS QID   RGFSF+   PL
Sbjct: 69  LARSDK-RVSVVHGGFASFQTALDDLGIGDVDGALFDLGVSSPQIDDAVRGFSFRFDAPL 127

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  + G+SA++ +  A+ +DL  ++   GEE+ + +IA AIV +R   P  TT  L+
Sbjct: 128 DMRMDTTRGMSAAEWIASASEQDLHEVIKNYGEERFSRQIARAIVAQRTENPIDTTGKLA 187

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +  + V   +  +  PATR+FQA+RIF+N E+EE+   L      LK GG L V++FHS
Sbjct: 188 KIAAENVRTRERGQ-DPATRTFQAVRIFINRELEEVEAVLPQVMCRLKEGGRLAVIAFHS 246

Query: 253 LEDRLVKKFFASRS-----GKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           LEDR+VK+F    S      +  AVR   +P     AV ++I      P +E+   N R+
Sbjct: 247 LEDRIVKQFVRKYSQHAPLPRWAAVREADLPEPPLKAVGKAIK-----PCEEETVANPRA 301

Query: 307 RSAKLRAGMRT 317
           RSA LR   RT
Sbjct: 302 RSAVLRVAERT 312


>gi|255325352|ref|ZP_05366458.1| S-adenosyl-methyltransferase MraW [Corynebacterium
           tuberculostearicum SK141]
 gi|255297917|gb|EET77228.1| S-adenosyl-methyltransferase MraW [Corynebacterium
           tuberculostearicum SK141]
          Length = 346

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 118/316 (37%), Positives = 176/316 (55%), Gaps = 24/316 (7%)

Query: 20  HVPVLLEKVIALLNP---APGK--VILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVS 72
           HVPV+ E++  LL P   A G   V++DAT GAGG++R F +    + VI +DRD  A+ 
Sbjct: 16  HVPVMRERMADLLRPQVEAAGDKAVLVDATLGAGGHTRYFLESFPKARVIGVDRDKQALR 75

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDK-----------GVDGVVFDLGVSSMQIDCG 121
              E +  Y ++F    A F +L   + +            G+ G +FDLGVSSMQ+D  
Sbjct: 76  NATERLAPYGDRFVGVNARFDELGSAIAEGEGDIFDSARTVGIAGALFDLGVSSMQLDQA 135

Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           DRGF+++   PLDMRM  S GI+A+DV+N     DL R+L   G+E+ A +IA A++K R
Sbjct: 136 DRGFAYKADAPLDMRMDPSQGITAADVLNTYTHGDLARVLKTYGDERFAGKIASAVLKER 195

Query: 181 QSAPFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
              PF+ +  L  L+   +   ++    HPA R+FQALR+ VN E+E +   L    +AL
Sbjct: 196 DKEPFENSARLVELLYDVIPAATRRTGGHPAKRTFQALRVEVNRELEAIENVLPVITQAL 255

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFAS-RSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQ 297
             GG  + +S+ SLEDR+VK  F    + K  A   M +P  A    F+ +T+     ++
Sbjct: 256 SEGGRAVFMSYQSLEDRIVKAAFKELTTSKTPAGLPMDLPGTAPK--FKIVTRGAEKASE 313

Query: 298 EDVAFNRRSRSAKLRA 313
           E+V  N R+ S ++RA
Sbjct: 314 EEVTENSRAASVRVRA 329


>gi|261401195|ref|ZP_05987320.1| S-adenosyl-methyltransferase MraW [Neisseria lactamica ATCC 23970]
 gi|269208876|gb|EEZ75331.1| S-adenosyl-methyltransferase MraW [Neisseria lactamica ATCC 23970]
          Length = 319

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 121/306 (39%), Positives = 169/306 (55%), Gaps = 10/306 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMG--SNVIALDRDPFAVSCGQE 76
           H+ VL  + +  L      V +D TFG GG+SR    ++G    ++  D+DP AV+  +E
Sbjct: 9   HITVLPYEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLVVFDKDPRAVAAAEE 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             R  K + S+    F+  Q  + D G   VDG +FDLGVSS QID   RGFSF+   PL
Sbjct: 69  LARSDK-RVSVVHGGFASFQTALDDLGIGDVDGALFDLGVSSPQIDDAARGFSFRFDAPL 127

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  + G+SA++ +  A+ +DL  ++   GEE+ + +IA AIV +R   P  TT+ L+
Sbjct: 128 DMRMDTTRGMSAAEWIASASEQDLHEVIKNYGEERFSRQIARAIVAQRAENPIDTTRKLA 187

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            L  + V   +  +  PATR+FQA+RIF+N E+EE+   L      LK GG L V++FHS
Sbjct: 188 QLAAQNVRTRERGQ-DPATRTFQAVRIFINRELEEVEAVLPQVMCRLKQGGRLAVIAFHS 246

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK+F    S      R      A  P     I  K + P   +VA N R+RSA L
Sbjct: 247 LEDRIVKQFVGKYSRHAPLPRWAAVREADLPEPPLKIVGKALKPGGAEVAANPRARSAVL 306

Query: 312 RAGMRT 317
           R   RT
Sbjct: 307 RVAERT 312


>gi|299065600|emb|CBJ36772.1| S-adenosyl-dependent methyl transferase [Ralstonia solanacearum
           CMR15]
          Length = 319

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 119/313 (38%), Positives = 183/313 (58%), Gaps = 21/313 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VL ++ +  L      + +D TFG GG+SR   +    G  +IA D+DP A++    
Sbjct: 11  HQTVLRDEAVDALLWRDDGIYIDGTFGRGGHSRLILERLGSGGRLIAFDKDPAAITEAG- 69

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           T+ D +  F++   +F+Q+   +  +G   V GV+ DLG+SS QID G RGFSF+  GPL
Sbjct: 70  TVEDAR--FAIEHDSFAQMGSALDARGIGRVAGVLLDLGISSPQIDEGARGFSFRMDGPL 127

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTT 188
           DMRM  + GI+A+  + +A+ +D+ R++   GEE+ A +IA AIV RR+ +    P   T
Sbjct: 128 DMRMDTTRGITAAQWLAEADERDIARVIRDYGEERFAVQIAKAIVARRRESGTRGPLDRT 187

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L++L+ + V   +  +  PATR+FQALRI +N E+ +L  GL++A + L+ GG L+V+
Sbjct: 188 SELAALVAQAVKTREKGQ-DPATRTFQALRIHINQELADLETGLKAAFERLEQGGRLVVI 246

Query: 249 SFHSLEDRLVKKF---FASRSGKVMAVRHMIPSNAH--PAVFQSITKKVVVPTQEDVAFN 303
           SFHSLEDR+VK+F    A             P  AH  PA    +  + V P++ +V+ N
Sbjct: 247 SFHSLEDRIVKRFMQALARPEQSAAPEMRRAPLRAHELPAPQLRLLGR-VRPSEAEVSAN 305

Query: 304 RRSRSAKLRAGMR 316
            R+RSA +R   R
Sbjct: 306 PRARSAIMRVAER 318


>gi|308271432|emb|CBX28040.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [uncultured Desulfobacterium sp.]
          Length = 312

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 108/312 (34%), Positives = 172/312 (55%), Gaps = 20/312 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQE 76
           H+PV+ ++VI  L+  PGK+  D T G  G++++ C K+  N  ++ +D+D  A+   ++
Sbjct: 5   HIPVMTKEVIHYLDCKPGKIYADCTIGGSGHAKAICEKIMPNGILVGIDQDKDAIENAKK 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  +     LF   F  L +++       VDG+V DLG+S  QID   RGFSF+ + PL
Sbjct: 65  ILFPHLPNIHLFHGNFVNLSEFLLKCNITKVDGIVLDLGLSLHQIDSSKRGFSFKNTEPL 124

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  S I+A +++N+ +  +L +++   GEE  A  IA  IVK R+    +T  +L 
Sbjct: 125 DMRMNTDSDINAGNLINKLDEVNLWKLIRDYGEEPWARNIARNIVKARKDCEIKTNAELV 184

Query: 193 SLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
            +I  ++        +IHPATR F ALRI VNNE+E L++ + +    L   G L V++F
Sbjct: 185 KIISDSIPKKIQYKQKIHPATRVFMALRIAVNNELERLSEFMDNVADLLNPEGRLCVLTF 244

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV------FQSITKKVVVPTQEDVAFNR 304
           HSLEDR+VK+       + M    + P N    +       +++ KK + P +E+   N 
Sbjct: 245 HSLEDRIVKQKI-----REMEKECVCPPNFPKCICNKIKLVRAVNKKAIAPGKEETDINP 299

Query: 305 RSRSAKLRAGMR 316
            +RSAKLR   R
Sbjct: 300 MARSAKLRVAER 311


>gi|300690333|ref|YP_003751328.1| S-adenosyl-dependent methyl transferase [Ralstonia solanacearum
           PSI07]
 gi|299077393|emb|CBJ50018.1| S-adenosyl-dependent methyl transferase [Ralstonia solanacearum
           PSI07]
          Length = 319

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 120/313 (38%), Positives = 181/313 (57%), Gaps = 21/313 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VL ++ +  L      + +D TFG GG+SR   +    G  +IA D+DP A++    
Sbjct: 11  HQTVLRDEAVDALLWRDDGIYIDGTFGRGGHSRLILERLGPGGRLIAFDKDPAAITEAG- 69

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           T+ D +  F++   +F+ L   +  +G   V GV+ DLG+SS QID G RGFSF+  GPL
Sbjct: 70  TVEDAR--FAIEHDSFAHLDAALDARGIGRVAGVLLDLGISSPQIDEGARGFSFRMDGPL 127

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTT 188
           DMRM  + GI+A+  + +A+ +D+ R++   GEE+ A +IA AIV RR  +    P   T
Sbjct: 128 DMRMDTTRGITAAQWLAEADARDIARVIRDYGEERFAVQIAKAIVARRSESGTRGPLDRT 187

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L++L+ + V   +  +  PATR+FQALRI VN E+ +L  GL++A + L+ GG L+V+
Sbjct: 188 SELAALVAQAVKTREKGQ-DPATRTFQALRIHVNQELADLETGLKAAFERLEQGGRLVVI 246

Query: 249 SFHSLEDRLVKKF---FASRSGKVMAVRHMIPSNAH--PAVFQSITKKVVVPTQEDVAFN 303
           SFHSLEDR+VK+F    A             P  AH  PA    +  + V P++ +V+ N
Sbjct: 247 SFHSLEDRIVKRFMQALARPEQSTAPEMRRAPLRAHELPAPQLRLLGR-VRPSEAEVSAN 305

Query: 304 RRSRSAKLRAGMR 316
            R+RSA +R   R
Sbjct: 306 PRARSAIMRVAER 318


>gi|332527095|ref|ZP_08403175.1| 16S rRNA m(4)C1402 methyltranserfase [Rubrivivax benzoatilyticus
           JA2]
 gi|332111526|gb|EGJ11508.1| 16S rRNA m(4)C1402 methyltranserfase [Rubrivivax benzoatilyticus
           JA2]
          Length = 313

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 125/316 (39%), Positives = 180/316 (56%), Gaps = 17/316 (5%)

Query: 11  SAIHHTIGDHVPVLL-EKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDR 66
           +A+  T   H  VLL E V AL+  A G + +D TFG GG++R+     S    V+A DR
Sbjct: 2   TAVTQTGRAHTTVLLAEAVEALVTQADG-LYVDGTFGRGGHTRALLAALSPRARVLAFDR 60

Query: 67  DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDR 123
           DP               +F++  A+F  +++ +  +GV    GV+ DLGVSS QID  +R
Sbjct: 61  DP---EAIAAAAAIDDPRFTICHASFGAMREELAARGVGQVQGVLLDLGVSSPQIDTPER 117

Query: 124 GFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GFSF+   PLDMRM  + G +A+D + +A+ + + +++   GEE+ A +IA A+V RRQ 
Sbjct: 118 GFSFRFDAPLDMRMDTTRGETAADFLARADERHIAQVIRDYGEERFALQIAKAVVARRQG 177

Query: 183 AP-FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
               +TT +LS+L+ + V   +  +  PATR+FQALRIFVN E+E L QGL +A + L  
Sbjct: 178 GDQLRTTGELSALVARAVKTREPGQ-DPATRTFQALRIFVNAELEALEQGLSAALQLLAP 236

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           GG L+V+SFHSLEDR+VK F    S      R  +   A P   +      V P  ++V 
Sbjct: 237 GGRLVVISFHSLEDRIVKNFITRESRDEFDRRAPM---APPRALKLKALARVKPGDDEVR 293

Query: 302 FNRRSRSAKLRAGMRT 317
            N R+RSA +R   RT
Sbjct: 294 ANPRARSAVMRVAERT 309


>gi|299821551|ref|ZP_07053439.1| S-adenosyl-methyltransferase [Listeria grayi DSM 20601]
 gi|299817216|gb|EFI84452.1| S-adenosyl-methyltransferase [Listeria grayi DSM 20601]
          Length = 313

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 105/303 (34%), Positives = 173/303 (57%), Gaps = 11/303 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76
           H  VLL + + +L+  P  + +DAT G  G+S    S      ++ A D+D  A+   +E
Sbjct: 7   HDTVLLHETVDMLDIKPDGIYVDATLGGAGHSEYLLSKLNKKGHLYAFDQDQTAIDHAKE 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  Y    +  ++ F  +++ + + GV   DG+++DLGVSS Q+D  +RGFS+ +   L
Sbjct: 67  RLAPYTGSVTFVKSNFRFMKEALAEHGVTEVDGILYDLGVSSPQLDVRERGFSYHQDAEL 126

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     ++A +VVN+   +DL RI    GEEK + +IA  I +RR     +TT +L 
Sbjct: 127 DMRMDQEQSLTAKEVVNEWRYEDLVRIFFQYGEEKFSKQIAREIERRRSEKTIETTGELV 186

Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  +   ++    HP  R FQA+RI VN+E++ +++ L  A   LK  G + V++FH
Sbjct: 187 DIIKTAIPAPARRKGGHPGKRVFQAIRIAVNDELDAVSESLEKALLLLKTNGRISVITFH 246

Query: 252 SLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+ K+ F  ++      R +  IP    P  F+ +T+K ++P++ ++A N R+RSA
Sbjct: 247 SLEDRITKQLFKQKTTAQETPRGLPVIPDEYQPD-FELVTRKPILPSEAEMATNNRARSA 305

Query: 310 KLR 312
           KLR
Sbjct: 306 KLR 308


>gi|308374510|ref|ZP_07667801.1| hypothetical protein TMFG_01127 [Mycobacterium tuberculosis
           SUMu006]
 gi|308341663|gb|EFP30514.1| hypothetical protein TMFG_01127 [Mycobacterium tuberculosis
           SUMu006]
 gi|323719262|gb|EGB28406.1| hypothetical protein TMMG_01445 [Mycobacterium tuberculosis
           CDC1551A]
          Length = 328

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 113/317 (35%), Positives = 173/317 (54%), Gaps = 20/317 (6%)

Query: 24  LLEKVIALLNPAPGK--------VILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSC 73
           + ++   LL PA  +        V+LDAT GAGG++  F +   G  +I LDRDP A+  
Sbjct: 1   MAQRCFELLTPALTRYYPDGSQAVLLDATIGAGGHAERFLEGLPGLRLIGLDRDPTALDV 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSSMQIDCGDRGFSF 127
            +  +  + ++ +L    +  L   + + G      VDG++FDLGVSSMQ+D  +RGF++
Sbjct: 61  ARSRLVRFADRLTLVHTRYDCLGAALAESGYAAVGSVDGILFDLGVSSMQLDRAERGFAY 120

Query: 128 QKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
               PLDMRM   + ++A+D+VN  +   L  IL   GEE+ A RIA  IV+RR   PF 
Sbjct: 121 ATDAPLDMRMDPTTPLTAADIVNTYDEAALADILRRYGEERFARRIAAGIVRRRAKTPFT 180

Query: 187 TTQDLSSLIQKTVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           +T +L +L+ + +  +   R+  HPA R+FQALRI VN+E+E L   + +A  AL  GG 
Sbjct: 181 STAELVALLYQAIP-APARRVGGHPAKRTFQALRIAVNDELESLRTAVPAALDALAIGGR 239

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           + V+++ SLEDR+VK+ FA            +    H   F+S+T      +  ++  N 
Sbjct: 240 IAVLAYQSLEDRIVKRVFAEAVASATPAGLPVELPGHEPRFRSLTHGAERASVAEIERNP 299

Query: 305 RSRSAKLRAGMRTVERS 321
           RS   +LRA  R   R+
Sbjct: 300 RSTPVRLRALQRVEHRA 316


>gi|194323503|ref|ZP_03057280.1| S-adenosyl-methyltransferase MraW [Francisella tularensis subsp.
           novicida FTE]
 gi|208778997|ref|ZP_03246343.1| S-adenosyl-methyltransferase MraW [Francisella novicida FTG]
 gi|194322358|gb|EDX19839.1| S-adenosyl-methyltransferase MraW [Francisella tularensis subsp.
           novicida FTE]
 gi|208744797|gb|EDZ91095.1| S-adenosyl-methyltransferase MraW [Francisella novicida FTG]
          Length = 299

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 117/302 (38%), Positives = 178/302 (58%), Gaps = 22/302 (7%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQETMRDYK 82
           +++ I  LN  P  + +DATFG GG+S++         +IA D+D  A+S  +E      
Sbjct: 1   MQESINDLNINPQGIYIDATFGRGGHSKAILNRLTTGRLIAFDKDLDAISYARENF---- 56

Query: 83  EQFSLFQ---ATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
            QFS F+   A+F+ + DY         +DG++ DLGVSS Q+D   RGFSF  +GPLDM
Sbjct: 57  -QFSNFEIVHASFASIYDYCLQHSLLGKIDGIIMDLGVSSPQLDNAARGFSFTHNGPLDM 115

Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTTQDLSS 193
           RM  S GI+AS  + + +V DL+ I  + GEE+ A +IA  I    +Q+    TT +L+ 
Sbjct: 116 RMDVSKGITASQALEELSVDDLSYIFKVYGEERFARKIALRIKDYIQQNGSISTTLELAE 175

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           LI+ T+   K  + +PATR FQALRI+VNNE+++L   L +    +K+GG +  +SFHSL
Sbjct: 176 LIRATI--GKKEKKNPATRCFQALRIYVNNELKDLEALLENILAVIKSGGRIAAISFHSL 233

Query: 254 EDRLVKKFFASR---SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           EDR+VK+ F++      ++  +  M+P ++     + ITKK     ++++  N RSRSA 
Sbjct: 234 EDRIVKQKFSALINPKQELNRITKMLPQDSSQIKLKWITKK-SKANEDELNQNVRSRSAI 292

Query: 311 LR 312
           LR
Sbjct: 293 LR 294


>gi|227512227|ref|ZP_03942276.1| S-adenosyl-methyltransferase [Lactobacillus buchneri ATCC 11577]
 gi|227084621|gb|EEI19933.1| S-adenosyl-methyltransferase [Lactobacillus buchneri ATCC 11577]
          Length = 315

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 112/309 (36%), Positives = 174/309 (56%), Gaps = 12/309 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77
           HV VLL + +  L+  P    +DAT G GG++    K     ++ + D+D  A+S  Q+ 
Sbjct: 6   HVTVLLHEAVDGLDVDPNGTYVDATLGGGGHTTEILKRIDKGHLYSFDQDEEAISYNQQH 65

Query: 78  MRDYKE--QFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           +R Y E  + SL    F  ++  + D+G+   DG+V+DLGVSS Q D   RGFS++    
Sbjct: 66  LRQYVENDKLSLIHDNFRNIKVALADQGISKIDGIVYDLGVSSPQFDEAGRGFSYRFEAR 125

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM     + A  V+N+   + L RI    GEEK + +IA  I + R+  P  TT DL
Sbjct: 126 LDMRMDQDNPVDAWKVINEWPYEKLVRIFYRYGEEKFSKQIARRIERTREDHPINTTTDL 185

Query: 192 SSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
            +LI++ +   ++ +  HPA + FQA+RI VN+E+  L   L  + + L  GG + V++F
Sbjct: 186 VTLIKEAIPAAARRHGGHPAKKVFQAVRIAVNDELSALEDSLEQSLELLAVGGRISVITF 245

Query: 251 HSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
            SLEDRLVK  F  ++   ++     +IP    P  ++ IT+K ++P ++++A N R+ S
Sbjct: 246 QSLEDRLVKTMFKEKASLPELPPNLPVIPKELQPK-YKLITRKPIIPNEDELADNHRAHS 304

Query: 309 AKLRAGMRT 317
           AKLR   RT
Sbjct: 305 AKLRIIERT 313


>gi|54114491|gb|AAV29879.1| NT02FT1003 [synthetic construct]
          Length = 305

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 119/307 (38%), Positives = 178/307 (57%), Gaps = 22/307 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77
           H  VLL + I  LN  P  + + ATFG GG+S++         +IA D+D  A+S  +E 
Sbjct: 2   HYSVLLPESINDLNINPQGIYIHATFGRGGHSKAILNRLTTGRLIAFDKDLDAISYAREN 61

Query: 78  MRDYKEQFSLFQ---ATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
                 QFS F+   A+F+ + DY         +DG++ DLGVSS Q+D   RGFSF  +
Sbjct: 62  F-----QFSNFEIVHASFASIYDYCLQHSLLGKIDGIIMDLGVSSPQLDNAARGFSFTHN 116

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTT 188
           GPLDMRM  S GI+AS  + + +V DL+ I  + GEE+ A +IA  I    +Q+   + T
Sbjct: 117 GPLDMRMDVSKGITASQALEELSVDDLSYIFKVYGEERFAKKIALRIKDYIQQNGSIRKT 176

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ LI  T+   K  + +PATR FQALRI+VNNE+++L   L +    +K+GG +  +
Sbjct: 177 LELAELILATI--GKKEKKNPATRCFQALRIYVNNELKDLEALLENILAVIKSGGRIAAI 234

Query: 249 SFHSLEDRLVKKFFASR---SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           SFHSLEDR+VK+ F++      ++  +  M+P ++     + ITKK     ++++  N R
Sbjct: 235 SFHSLEDRIVKQKFSALINPKQELNRITKMLPQDSSQIKLKWITKKSKA-NEDELNQNVR 293

Query: 306 SRSAKLR 312
           SRSA LR
Sbjct: 294 SRSAILR 300


>gi|240126238|ref|ZP_04739124.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae SK-92-679]
 gi|254494330|ref|ZP_05107501.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae 1291]
 gi|268595426|ref|ZP_06129593.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae 35/02]
 gi|268597236|ref|ZP_06131403.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae FA19]
 gi|268599411|ref|ZP_06133578.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae MS11]
 gi|268682771|ref|ZP_06149633.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae PID332]
 gi|268684819|ref|ZP_06151681.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae SK-92-679]
 gi|291043143|ref|ZP_06568866.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae DGI2]
 gi|262831552|sp|B4RQD7|RSMH_NEIG2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|226513370|gb|EEH62715.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae 1291]
 gi|268548815|gb|EEZ44233.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae 35/02]
 gi|268551024|gb|EEZ46043.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae FA19]
 gi|268583542|gb|EEZ48218.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae MS11]
 gi|268623055|gb|EEZ55455.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae PID332]
 gi|268625103|gb|EEZ57503.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae SK-92-679]
 gi|291012749|gb|EFE04732.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae DGI2]
          Length = 318

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 117/311 (37%), Positives = 174/311 (55%), Gaps = 20/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMG--SNVIALDRDPFAVSCGQE 76
           H+ VLL + +  L      V +D TFG GG+SR    ++G    +I  D+DP A++  +E
Sbjct: 9   HITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFDKDPQAIAVAEE 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             R  K +  +    F+  Q  +   G   VDG +FDLG+SS QID G RGFSF+   PL
Sbjct: 69  LARSDK-RVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGSRGFSFRFDAPL 127

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  + G+SA++ +  A+ +DL  ++   GEE+ + +I  AIV +R  +P  TT+ L+
Sbjct: 128 DMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIVRAIVAQRAESPIDTTRKLA 187

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            ++ + V   +  +  PATR+FQA+RIF+N E+EE+   L      LK GG L V++FHS
Sbjct: 188 QIVAQNVRTRERGQ-DPATRTFQAIRIFINRELEEVGAVLPQVMCRLKEGGRLAVIAFHS 246

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAH------PAVFQSITKKVVVPTQEDVAFNRRS 306
           LEDR+VK+F      K  +    +PS A       P     I  + + P + ++A N R+
Sbjct: 247 LEDRIVKQFV-----KKYSQHEPLPSWAAVREADLPEPPLKIVGRALKPGEAEIAANPRA 301

Query: 307 RSAKLRAGMRT 317
           RSA LR   RT
Sbjct: 302 RSAVLRVAERT 312


>gi|254246426|ref|ZP_04939747.1| S-adenosyl-methyltransferase [Burkholderia cenocepacia PC184]
 gi|124871202|gb|EAY62918.1| S-adenosyl-methyltransferase [Burkholderia cenocepacia PC184]
          Length = 319

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 121/311 (38%), Positives = 185/311 (59%), Gaps = 21/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGS--NVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  V +D TFG GG+SR+   ++ S   +IA D+DP A+   Q 
Sbjct: 13  HRTVLLDEAVESLVTRPDGVYVDGTFGRGGHSRAVLARLASAGRLIAFDKDPRAIETAQ- 71

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + D +  FS+   +F+ ++D +  +GV+   GV+ DLGVSS Q+D   RGFSF+  GPL
Sbjct: 72  GIEDAR--FSIVHDSFASMRDALAARGVEKVSGVLLDLGVSSPQVDDPARGFSFRADGPL 129

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTT 188
           DMRM  + G SA++ + +A+V++LT ++   GEE+ A +IA A+V RR  +    P  TT
Sbjct: 130 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDTT 189

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ ++   V   +  +  PATR+FQA+RI VN E+ +L   L +A   L+ GG L+V+
Sbjct: 190 GELAQIVGHVVKTREKGK-DPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVI 248

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNRR 305
           SFHSLEDR+VK+F  + +    AV   +P  A      S   K++    P++ +VA N R
Sbjct: 249 SFHSLEDRIVKRFMQAHA-SAPAVDRRLPIRA--VDLPSPPLKIISRQFPSEAEVAANPR 305

Query: 306 SRSAKLRAGMR 316
           +RSA +R   R
Sbjct: 306 ARSAVMRIAER 316


>gi|28493187|ref|NP_787348.1| S-adenosyl-methyltransferase MraW [Tropheryma whipplei str. Twist]
 gi|28572698|ref|NP_789478.1| S-adenosyl-methyltransferase [Tropheryma whipplei TW08/27]
 gi|42559466|sp|Q83GN7|RSMH_TROWT RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|42559467|sp|Q83HJ6|RSMH_TROW8 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|28410830|emb|CAD67216.1| S-adenosyl-methyltransferase [Tropheryma whipplei TW08/27]
 gi|28476228|gb|AAO44317.1| unknown [Tropheryma whipplei str. Twist]
          Length = 317

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 118/303 (38%), Positives = 171/303 (56%), Gaps = 9/303 (2%)

Query: 20  HVPVLLEKVIALLNP--APGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVSCGQ 75
           H+PV+L +V  L+ P    G V +DAT GAGG+S +      G+ +  +DRD +A++  +
Sbjct: 4   HLPVMLGEVCQLIEPVLGIGDVFIDATLGAGGHSEAILMSSQGALLYGIDRDAYALALAR 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           + +  + ++      TF +   Y+ +      +FDLG+SSMQID  DRGFS+ KSGPLDM
Sbjct: 64  KRLSGFADRCKFVHDTFDKFDKYLSNLHPKVFLFDLGMSSMQIDNPDRGFSYMKSGPLDM 123

Query: 136 RMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM+ S  I+A +++N  +   L RI    G+E+ A RIA  I K R  +   TT  +S L
Sbjct: 124 RMNESDKITAKEILNGYSETALIRIFRDYGQERYAKRIARQICKARSVSELVTTCQVSQL 183

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           I + V      + HPA R FQALRI VN+E+  L   L  A   L+ GG ++V+S+HSLE
Sbjct: 184 I-RDVCPPHIRKGHPAKRVFQALRIEVNSELLFLRTALEKALDLLQVGGRIVVLSYHSLE 242

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           DR+VK  F  RS  V  +      N  P  ++ I K +  P + ++A N R+ SA LRA 
Sbjct: 243 DRIVKHLF--RSVSVSQLPKGFYINKDPE-YKLIGKDLKNPKETEIANNPRASSAHLRAV 299

Query: 315 MRT 317
            R 
Sbjct: 300 ERV 302


>gi|313888490|ref|ZP_07822157.1| S-adenosyl-methyltransferase MraW [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845519|gb|EFR32913.1| S-adenosyl-methyltransferase MraW [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 312

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 116/306 (37%), Positives = 173/306 (56%), Gaps = 18/306 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNV-IALDRDPFAVSCGQE 76
           H  VLL++ I  LN   GK+ LD T G  G+SR   K   G+ + I +D+D  A+   +E
Sbjct: 5   HKSVLLDETIEGLNIREGKIYLDGTLGGAGHSREILKKLKGTGLLIGIDQDIEALEVAKE 64

Query: 77  TMRDYK--EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
            + +YK  E F+L    F +  D +    +DGV+ D+GVSS Q D  +RGFS++   PLD
Sbjct: 65  RLSNYKNVEFFNLNYINFEKALDELGIDKIDGVLLDIGVSSYQFDNPERGFSYRFDAPLD 124

Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM     ISA D+VN  +  ++TRI+   GEEK A+RIA  IV  R++   +TT +L  
Sbjct: 125 MRMDQELEISARDIVNTYSESEITRIIKEYGEEKWAARIAKFIVDERKTKNIETTFELVE 184

Query: 194 LIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +I+  +  S + N  HPA R+FQALRI VN E++ L   +      L  GG + +++FHS
Sbjct: 185 IIKNAIPASARRNGPHPAKRTFQALRIEVNRELDVLEDSIERFVHRLNPGGRIAIITFHS 244

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNA------HPAVFQSITKKVVVPTQEDVAFNRRS 306
           LEDR+VK  F     K +    + P ++           + +T+K +  ++E++  N+RS
Sbjct: 245 LEDRIVKNAF-----KYLEKDCICPPSSPICTCDKKKEIKILTRKPITASEEELKENKRS 299

Query: 307 RSAKLR 312
            SAKLR
Sbjct: 300 HSAKLR 305


>gi|259503028|ref|ZP_05745930.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Lactobacillus antri DSM 16041]
 gi|259168894|gb|EEW53389.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Lactobacillus antri DSM 16041]
          Length = 317

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 115/306 (37%), Positives = 177/306 (57%), Gaps = 13/306 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76
           +HV VLL++ +A LN  P    +D T G GG++ +        ++ + D+D  A+   ++
Sbjct: 7   NHVTVLLKEAVAGLNIRPTGTYVDGTLGGGGHTSAILGQLTTGHLYSFDQDETAIDYNRD 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            + D     + +L +  F  LQ  +   GV   DGV++DLGVSS Q D   RGFS++   
Sbjct: 67  QLNDAIAAGKLTLVEDNFRHLQQALAAHGVRRVDGVLYDLGVSSPQFDDAQRGFSYKLDA 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+    +SA +VVN+   + L RIL   GEE+ A +IA  I +RRQ  P +TT +
Sbjct: 127 PLDMRMNQDQSLSAMEVVNEWPYERLVRILYRYGEERFAKQIARKIEQRRQREPIRTTFE 186

Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I++ +   ++ +  HPA +SFQA+RI VN+E+  L + L  A   L  GG + V++
Sbjct: 187 LVDVIKEAIPAAARRHGGHPAKKSFQAVRIAVNDELGALEESLEQALAMLTVGGRISVIT 246

Query: 250 FHSLEDRLVKKFF---ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           F SLEDRLVK  F   +S S  +     +IP+   P  F+ I +K ++P+ +++A N R+
Sbjct: 247 FQSLEDRLVKTLFREKSSLSADLPQGLPVIPAGMSPD-FKLINRKPILPSAQELAANHRA 305

Query: 307 RSAKLR 312
            SAKLR
Sbjct: 306 HSAKLR 311


>gi|325977602|ref|YP_004287318.1| S-adenosyl-methyltransferase MraW [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
 gi|325177530|emb|CBZ47574.1| S-adenosyl-methyltransferase MraW [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
          Length = 324

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 117/323 (36%), Positives = 181/323 (56%), Gaps = 19/323 (5%)

Query: 6   CKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMG--SNVI 62
            K M++  HH     + VLL + + +L+  P  V +DAT G  G+S     K+G   ++ 
Sbjct: 6   MKGMTTDFHH-----ITVLLHETVDMLDIKPDGVYVDATLGGAGHSEYLLSKLGPTGHLY 60

Query: 63  ALDRDPFAVSCGQETMRDYKE--QFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQ 117
           A D+D  A+   Q  ++DY E  Q +  +  F  L   +   GV   DG+++DLGVSS Q
Sbjct: 61  AFDQDQTAIDNAQIRLKDYIEKGQVTFIKDNFRNLASNLASHGVTEIDGILYDLGVSSPQ 120

Query: 118 IDCGDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
           +D  +RGFS++K  PLDMRM+    +SA DVVN  +  DL RI    GE+K + +IA  I
Sbjct: 121 LDERERGFSYKKDAPLDMRMNRDQDLSAYDVVNTYDYHDLVRIFFKYGEDKFSKQIARKI 180

Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRS 234
            + R+  P +TT +L+ +I K+   +K    + HPA + FQA+RI VN+E+    + ++ 
Sbjct: 181 EQARKVKPIETTTELAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQ 239

Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVV 293
           A + L   G + V++FHSLEDRL K+ F   S   V      IP +  P +   + +K +
Sbjct: 240 AIELLAVDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPEDMQPKL-ALVNRKPI 298

Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316
           +P++E++  N RS SAKLR   +
Sbjct: 299 LPSEEELEVNNRSHSAKLRVARK 321


>gi|283379446|dbj|BAI66129.1| S-adenosyl-methyltransferase [Neisseria gonorrhoeae]
 gi|283379452|dbj|BAI66134.1| S-adenosyl-methyltransferase [Neisseria gonorrhoeae]
          Length = 314

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 117/311 (37%), Positives = 174/311 (55%), Gaps = 20/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMG--SNVIALDRDPFAVSCGQE 76
           H+ VLL + +  L      V +D TFG GG+SR    ++G    +I  D+DP A++  +E
Sbjct: 5   HITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFDKDPQAIAVAEE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             R  K +  +    F+  Q  +   G   VDG +FDLG+SS QID G RGFSF+   PL
Sbjct: 65  LARSDK-RVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGSRGFSFRFDAPL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  + G+SA++ +  A+ +DL  ++   GEE+ + +I  AIV +R  +P  TT+ L+
Sbjct: 124 DMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIVRAIVAQRAESPIDTTRKLA 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            ++ + V   +  +  PATR+FQA+RIF+N E+EE+   L      LK GG L V++FHS
Sbjct: 184 QIVAQNVRTRERGQ-DPATRTFQAIRIFINRELEEVGAVLPQVMCRLKEGGRLAVIAFHS 242

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAH------PAVFQSITKKVVVPTQEDVAFNRRS 306
           LEDR+VK+F      K  +    +PS A       P     I  + + P + ++A N R+
Sbjct: 243 LEDRIVKQFV-----KKYSQHEPLPSWAAVREADLPEPPLKIVGRALKPGEAEIAANPRA 297

Query: 307 RSAKLRAGMRT 317
           RSA LR   RT
Sbjct: 298 RSAVLRVAERT 308


>gi|58696920|ref|ZP_00372421.1| S-adenosyl-methyltransferase MraW [Wolbachia endosymbiont of
           Drosophila simulans]
 gi|58536850|gb|EAL60058.1| S-adenosyl-methyltransferase MraW [Wolbachia endosymbiont of
           Drosophila simulans]
          Length = 251

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 106/260 (40%), Positives = 159/260 (61%), Gaps = 17/260 (6%)

Query: 61  VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQ 117
           V A+DRD        +    Y ++  LF   FS +++ +     +G+DG+VFD+GVSSMQ
Sbjct: 3   VYAIDRDETVTKFYDDLSVRYPDRIKLFIEKFSNIKNLLDSNNIEGIDGIVFDIGVSSMQ 62

Query: 118 IDCGDRGFSFQKSGPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
           +D GDRGFSF   GPLDM M + S I+AS  VN    +++   +   G E+ + +IA AI
Sbjct: 63  LDNGDRGFSFLHDGPLDMSMDNSSYINASTFVNALREEEIANTIYNYGGERHSRKIARAI 122

Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236
           V  R+    +TT +L+ ++ ++V F   ++I PATR+FQA+RI+VN+E+ EL +G+++A 
Sbjct: 123 VNARKKKTIKTTFELADIV-RSVVFRGKSKIDPATRTFQAIRIWVNDELGELEKGIKAAS 181

Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296
           + L   G LIVV+FHSLEDR+VK FF          + +  ++     F  + KKV+  +
Sbjct: 182 EILSENGKLIVVTFHSLEDRIVKTFF----------KDLCATDCK--TFSLLNKKVIEAS 229

Query: 297 QEDVAFNRRSRSAKLRAGMR 316
            E+V+ N RSRSAKLRA  R
Sbjct: 230 IEEVSANPRSRSAKLRAIQR 249


>gi|52841149|ref|YP_094948.1| S-adenosyl-methyltransferase MraW [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52628260|gb|AAU27001.1| S-adenosylmethyl transferase MraW [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 334

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 119/312 (38%), Positives = 173/312 (55%), Gaps = 18/312 (5%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSC 73
           +  H  VLL + I  L      +  D TFG GG+SR      S+   + A+D+D  AV  
Sbjct: 27  MAKHQSVLLHESIKGLAIKADGIYFDGTFGRGGHSREILNHLSDKGRLFAIDKDLDAV-- 84

Query: 74  GQETMRDY---KEQFSLFQATFSQLQDYVPDKGV----DGVVFDLGVSSMQIDCGDRGFS 126
             +  +DY    ++F +F  +F+Q++++    GV    DG++ DLGVSS Q+D  +RGFS
Sbjct: 85  --QYAKDYFGLDKRFQIFHGSFAQIKEFASQAGVIGAVDGILLDLGVSSPQLDNPERGFS 142

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           F   GPLDMRM  +  I+A++ VN+A V +L  +    GEE+ A RIA AIV  R+  P 
Sbjct: 143 FMLQGPLDMRMDLTQSINAANFVNEAEVNELAHVFRAYGEERFAGRIAKAIVDARKLKPI 202

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            TT +L+ ++++     + ++ HPATR FQA+RI VN E+ +L+  L      L  GG L
Sbjct: 203 TTTLELAEIVKEANPKWEKHK-HPATRVFQAIRIHVNQELTDLSNCLEQCLDVLGPGGRL 261

Query: 246 IVVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
            V+SFHSLEDR+VK+F   +  G    V   I        F+ +  K V P   ++  N 
Sbjct: 262 AVISFHSLEDRIVKQFMRDKEQGNRPPVEVPIKYEELKTNFKKVG-KAVKPQSSEIKENV 320

Query: 305 RSRSAKLRAGMR 316
           RSRSA LR G +
Sbjct: 321 RSRSAVLRIGEK 332


>gi|168186149|ref|ZP_02620784.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum C str.
           Eklund]
 gi|169295776|gb|EDS77909.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum C str.
           Eklund]
          Length = 309

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 113/306 (36%), Positives = 164/306 (53%), Gaps = 9/306 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
           +HVPVLLE+ I  LN     + +D T G  G+S    K  S    +I +D+D  A+   +
Sbjct: 4   NHVPVLLEETIDSLNIKKDGIYVDCTLGGAGHSSEILKKLSKKGRLIGIDQDINAIKAAK 63

Query: 76  ETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             ++ Y E  +     F  L    D +  + VDG++ DLGVSS Q+D  +RGFS+     
Sbjct: 64  NRLKGY-ENITYVHNNFYNLAGILDELNVEKVDGILMDLGVSSYQLDTPERGFSYMNDAM 122

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+  SGISA DVVN  +  DL RI+   GEE+ A +IA AIVK R   P +TT  L
Sbjct: 123 LDMRMNTESGISAYDVVNGYSEDDLFRIIKNYGEERFARKIARAIVKERNEKPIETTLQL 182

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             +I+  +        HPA ++FQA+RI VN+E+E L + +      L   G + V++FH
Sbjct: 183 VKIIRNVIPMKFQQGGHPAKKTFQAIRIEVNHELEILNKTVEDGVNYLNKDGRISVITFH 242

Query: 252 SLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR++K  F          +   I       + + IT+K + P++ +   N RSRS+K
Sbjct: 243 SLEDRIIKTKFKELENPCTCPKEFPICVCGKKPIVKVITRKPIEPSEVERENNSRSRSSK 302

Query: 311 LRAGMR 316
           LR   +
Sbjct: 303 LRVAQK 308


>gi|311741520|ref|ZP_07715344.1| S-adenosyl-methyltransferase MraW [Corynebacterium pseudogenitalium
           ATCC 33035]
 gi|311303690|gb|EFQ79769.1| S-adenosyl-methyltransferase MraW [Corynebacterium pseudogenitalium
           ATCC 33035]
          Length = 346

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 119/316 (37%), Positives = 177/316 (56%), Gaps = 24/316 (7%)

Query: 20  HVPVLLEKVIALLNP---APGK--VILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVS 72
           HVPV+ E++  LL P   A G   V++DAT GAGG++R F +    + VI +DRD  A+ 
Sbjct: 16  HVPVMRERMADLLRPQVEAAGDKAVLVDATLGAGGHTRYFLESFPEARVIGVDRDKQALR 75

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDK-----------GVDGVVFDLGVSSMQIDCG 121
              E +  Y ++F    A F +L   + +            G+ G +FDLGVSSMQ+D  
Sbjct: 76  NATERLAPYGDRFVGVNARFDELGSAIAEGEGDIFDSARSVGIAGALFDLGVSSMQLDQA 135

Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           DRGF+++   PLDMRM  S GI+A+DV+N  +  DL R+L   G+E+ A +IA A++K R
Sbjct: 136 DRGFAYKADAPLDMRMDPSQGITAADVLNTYSHGDLARVLKTYGDERFAGKIASAVLKER 195

Query: 181 QSAPFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
              PF  +  L  L+   +   ++    HPA R+FQALR+ VN E+E +   L    +AL
Sbjct: 196 DKEPFVNSARLVELLYDVIPAATRRTGGHPAKRTFQALRVEVNRELEAIENVLPVITQAL 255

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFAS-RSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQ 297
             GG  + +S+ SLEDR+VK  F    + K  A   M +P  A    F+ +T+     ++
Sbjct: 256 SEGGRAVFMSYQSLEDRIVKAAFKELTTSKTPAGLPMDLPGTAPK--FKIVTRGAEKASE 313

Query: 298 EDVAFNRRSRSAKLRA 313
           E+VA N R+ S ++RA
Sbjct: 314 EEVAENSRAASVRVRA 329


>gi|328952338|ref|YP_004369672.1| Ribosomal RNA small subunit methyltransferase H [Desulfobacca
           acetoxidans DSM 11109]
 gi|328452662|gb|AEB08491.1| Ribosomal RNA small subunit methyltransferase H [Desulfobacca
           acetoxidans DSM 11109]
          Length = 303

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 113/308 (36%), Positives = 172/308 (55%), Gaps = 31/308 (10%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRD 80
           ++++V+A L   PG + +D T G GG++ +     S    V+ LD+D  A+      +  
Sbjct: 1   MVQEVLAELQCQPGHIYVDGTVGLGGHAEAILLRSSPTGQVVGLDQDSAALQIAALRLLP 60

Query: 81  YKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
           Y  +  L  + ++QL + +  +    VDG++ DLG+S+ Q+    RGFSF+   PLDMRM
Sbjct: 61  YGPRVYLIHSCYTQLAEILQQRRIESVDGILLDLGISTEQLKSSGRGFSFKGKEPLDMRM 120

Query: 138 S--CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           +      +A+D++N      L+R+   LGEE+ A RIA  IV+ RQ AP  TT  L  +I
Sbjct: 121 NPDVQTTTAADLLNTEPEAQLSRMFWELGEERWARRIARNIVRARQQAPLITTNQLVEVI 180

Query: 196 QKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
            +++       RIHPATR FQALRI VN E+E+++  +  A K L  GG L+++ +HSLE
Sbjct: 181 LRSLPPKTGMKRIHPATRVFQALRIAVNQELEKISAFIPQAIKVLAPGGRLVIIDYHSLE 240

Query: 255 DRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           DR+VK+ F  A R+G V                +   KK ++P + +VA N  +RSAK  
Sbjct: 241 DRIVKRAFIEAERAGSV----------------RRRYKKPLIPGEAEVASNPSARSAK-- 282

Query: 313 AGMRTVER 320
             MRTVE+
Sbjct: 283 --MRTVEK 288


>gi|225351427|ref|ZP_03742450.1| hypothetical protein BIFPSEUDO_03022 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157771|gb|EEG71054.1| hypothetical protein BIFPSEUDO_03022 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 343

 Score =  183 bits (464), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 114/306 (37%), Positives = 168/306 (54%), Gaps = 13/306 (4%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74
           H PVLL   + L+ PA   PG + +D T G  G+S +F K    + +I +DRD  A+S  
Sbjct: 8   HQPVLLRDCVDLVVPALARPGSIAVDCTLGLAGHSTAFLKASPQARLIGIDRDTEALSLA 67

Query: 75  QETMR--DYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQK 129
            + MR     ++F    A F      + D+G+D    V  DLG+SS+QID  +RGFS+  
Sbjct: 68  TQRMRMEGLADRFIPVHAAFDDFAQVLDDQGIDQVNAVFMDLGLSSLQIDETERGFSYSH 127

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM  +  ++A  ++ + +  DL RI    GEE+ + +IA  IV+RR+  P  T+
Sbjct: 128 DAPLDMRMDVTQPLTAEQILAEYSFADLVRIFRTYGEERFSKQIAREIVRRREIEPLTTS 187

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ L+ + V  +     +PA R FQALRI VN E+++LA  L      L  GG L+V 
Sbjct: 188 GQLNRLVDEVVPQAHRPAGNPAKRVFQALRIEVNGELDKLAGTLPQIANHLAVGGRLVVE 247

Query: 249 SFHSLEDRLVKKFF-ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           S+HSLED+ VK F        V A   +IP +  P  F+ +T+  +   +E++A N RS 
Sbjct: 248 SYHSLEDKTVKTFMNQGLKADVPADMPVIPPDMMP-FFKELTRGAIKAAEEEIAMNPRSA 306

Query: 308 SAKLRA 313
           S +LRA
Sbjct: 307 SVRLRA 312


>gi|225021917|ref|ZP_03711109.1| hypothetical protein CORMATOL_01949 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945304|gb|EEG26513.1| hypothetical protein CORMATOL_01949 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 341

 Score =  183 bits (464), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 115/322 (35%), Positives = 179/322 (55%), Gaps = 32/322 (9%)

Query: 20  HVPVLLEKVIALLNPA------PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAV 71
           HVPVL E+V  LL PA         +ILDAT GAGG+S  F       N+I LDRD  A+
Sbjct: 9   HVPVLRERVTELLAPALCNTTTNPPIILDATLGAGGHSEYFLTTFPQVNIIGLDRDTTAL 68

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVP--------------DKGVDGVVFDLGVSSMQ 117
           +     + ++ ++ +     F      +                +G+ G +FDLGVSSMQ
Sbjct: 69  AQAATRLANFGDRITTLHTRFDDFPTAIQAAADAGNATCQAALTEGISGALFDLGVSSMQ 128

Query: 118 IDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
           +D  +RGF+++   PLDMRM+ S GI+A++++N     +LTRIL   G+E+ AS+IA AI
Sbjct: 129 LDQVNRGFAYRVDAPLDMRMNNSEGITAAEILNTYPHGNLTRILKTYGDERFASKIATAI 188

Query: 177 VKRRQSAPFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           ++ R+ APF T+  L  L+  T+   ++    HPA R+FQALRI VN E+  +   L   
Sbjct: 189 IREREHAPFTTSARLVELLYNTIPAATRRTGGHPAKRTFQALRIEVNQELAAITNVLPRI 248

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFA----SRSGKVMAVRHMIPSNAHPAVFQSITKK 291
             AL  GG  + +++ SLED+++KK+FA    S++ + + +   +P  A  A F+ +T+ 
Sbjct: 249 ADALIPGGRAVFMAYQSLEDKIIKKYFAEITTSKTPRGLPIE--LPEYA--AKFRLVTRG 304

Query: 292 VVVPTQEDVAFNRRSRSAKLRA 313
               T  ++A N R+   ++RA
Sbjct: 305 AEKATPAEIADNSRAAPVRVRA 326


>gi|209524297|ref|ZP_03272847.1| S-adenosyl-methyltransferase MraW [Arthrospira maxima CS-328]
 gi|209495388|gb|EDZ95693.1| S-adenosyl-methyltransferase MraW [Arthrospira maxima CS-328]
          Length = 324

 Score =  183 bits (464), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 121/306 (39%), Positives = 171/306 (55%), Gaps = 30/306 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQ-- 75
           H+PVL  ++I  L    G   LDAT G GG++R   +   NV   A+DRD  A++  +  
Sbjct: 19  HIPVLGRELIEGLAVQEGGHYLDATVGGGGHTRMIFQAAPNVRVTAIDRDLEAIAAAKSM 78

Query: 76  --ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             +T+ +   +   +   FSQ     P +  DG++ DLGV+S Q+D   RGFSF+  GPL
Sbjct: 79  LMDTIGNCGARLKFWHGNFSQYPS-SPSQ-FDGIIADLGVNSHQLDTPGRGFSFRHCGPL 136

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+    +SA++++N  + K L  I    GEE+ + RIA  IV++R   PFQTT+ L+
Sbjct: 137 DMRMNPQDPLSAAEIINTWDEKQLADIFYTYGEERLSRRIARQIVEKR---PFQTTEHLA 193

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + I   V    +  RIHPATR FQALRI VN E+  L   L +A   LK  G + ++SFH
Sbjct: 194 NAIANCVPSKYRYGRIHPATRVFQALRIAVNGELTALETFLETAPTWLKPRGRIGIISFH 253

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR VK  F          RH      HP + + +TKK + P  +++  N R+RSAKL
Sbjct: 254 SLEDRPVKHGF----------RH------HP-LLKVLTKKPITPQPDEINQNPRARSAKL 296

Query: 312 RAGMRT 317
           R   R+
Sbjct: 297 RLAERS 302


>gi|206561807|ref|YP_002232572.1| S-adenosyl-methyltransferase MraW [Burkholderia cenocepacia J2315]
 gi|263447024|sp|B4E6K0|RSMH_BURCJ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|198037849|emb|CAR53793.1| S-adenosyl-methyltransferase MraW [Burkholderia cenocepacia J2315]
          Length = 313

 Score =  183 bits (464), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 120/311 (38%), Positives = 184/311 (59%), Gaps = 21/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  V +D TFG GG+SR+        + +IA D+DP A+   Q 
Sbjct: 7   HRTVLLDEAVESLVTRPDGVYVDGTFGRGGHSRAVLARLAPAARLIAFDKDPRAIETAQ- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++D +  FS+   +F+ ++D +  +GV+   GV+ DLGVSS Q+D   RGFSF+  GPL
Sbjct: 66  GIKDAR--FSIVHDSFASMRDALAARGVEKVSGVLLDLGVSSPQVDDPARGFSFRADGPL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTT 188
           DMRM  + G SA++ + +A+V++LT ++   GEE+ A +IA A+V RR  +    P  TT
Sbjct: 124 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDTT 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ ++   V   +  +  PATR+FQA+RI VN E+ +L   L +A   L+ GG L+V+
Sbjct: 184 GELAQIVGHVVKTREKGK-DPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVI 242

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNRR 305
           SFHSLEDR+VK+F  + +    AV   +P  A      S   K++    P++ +VA N R
Sbjct: 243 SFHSLEDRIVKRFMQAHA-SAPAVDRRLPIRA--VDLPSPPLKIISRQFPSEAEVAANPR 299

Query: 306 SRSAKLRAGMR 316
           +RSA +R   R
Sbjct: 300 ARSAVMRIAER 310


>gi|296134857|ref|YP_003642099.1| S-adenosyl-methyltransferase MraW [Thiomonas intermedia K12]
 gi|295794979|gb|ADG29769.1| S-adenosyl-methyltransferase MraW [Thiomonas intermedia K12]
          Length = 311

 Score =  183 bits (464), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 122/310 (39%), Positives = 179/310 (57%), Gaps = 18/310 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H  VLL + +  L   P  V LDATFG GG+SR   +  S    +IA+DRDP A+    +
Sbjct: 8   HRTVLLHEAVDQLITNPDGVYLDATFGRGGHSREILRRLSPAGRLIAIDRDPQAIEAAAQ 67

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
               +  +F +  A FS+    + ++GV   DG++FDLGVSS Q+D  +RGFSF+  GPL
Sbjct: 68  I---HDARFVIKHAPFSEFARVLHEQGVAQADGLLFDLGVSSPQLDQPERGFSFRADGPL 124

Query: 134 DMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQTTQDL 191
           DMRM + SG + ++ +  A+V ++  +L   G+E+ A +IA  IV RR + AP   + +L
Sbjct: 125 DMRMDNSSGQTVAEYLATASVDEIATVLRDYGDERAAVQIAKKIVARRDAGAPLARSGEL 184

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           ++L+   V  S+     PATR+FQALRI VN E+ ++   L      L+ GG L V+SFH
Sbjct: 185 AALVASAVK-SREPGQDPATRTFQALRIHVNAELAQIETALSQVLDCLRPGGRLAVISFH 243

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVV--VPTQEDVAFNRRSR 307
           SLED L+K+F    +R+  V   +  +P  +  A FQ   K+VV   P+  +++ N RSR
Sbjct: 244 SLEDALIKRFIHRHARAPAVDRRQPFVPGVS--AEFQPQLKEVVRMRPSAAEISGNARSR 301

Query: 308 SAKLRAGMRT 317
           SA LR   R 
Sbjct: 302 SAMLRVAQRV 311


>gi|294338811|emb|CAZ87145.1| S-adenosyl-dependent methyl transferase MraW [Thiomonas sp. 3As]
          Length = 317

 Score =  183 bits (464), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 123/310 (39%), Positives = 179/310 (57%), Gaps = 20/310 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H  VLL + +  L   P  V LDATFG GG+SR   +  S    +IA+DRDP A+    +
Sbjct: 14  HRTVLLHEAVDQLITNPDGVYLDATFGRGGHSREILRRLSPAGRLIAIDRDPQAIEAAAQ 73

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
               +  +F +  A FS+    + ++GV   DG++FDLGVSS Q+D  +RGFSF+  GPL
Sbjct: 74  I---HDARFVIKHAPFSEFARVLHEQGVAQADGLLFDLGVSSPQLDQPERGFSFRADGPL 130

Query: 134 DMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQTTQDL 191
           DMRM + SG + ++ +  A+V ++  +L   G+E+ A +IA  IV RR + AP   + +L
Sbjct: 131 DMRMDNSSGQTVAEYLATASVDEIATVLRDYGDERAAVQIAKKIVARRDAGAPLARSGEL 190

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           ++L+   V  S+     PATR+FQALRI VN E+ ++   L      L+ GG L V+SFH
Sbjct: 191 AALVASAVK-SREPGQDPATRTFQALRIHVNAELAQIETALSQVLDCLRPGGRLAVISFH 249

Query: 252 SLEDRLVKKFFASRSGKVMAV---RHMIPSNAHPAVFQSITKKVV--VPTQEDVAFNRRS 306
           SLED L+K+F   R  +  AV   +  +P  +  A FQ   K+VV   P+  +++ N RS
Sbjct: 250 SLEDALIKRFI-HRHARAPAVDRRQPFVPGVS--AEFQPQLKEVVRMRPSAAEISGNARS 306

Query: 307 RSAKLRAGMR 316
           RSA LR   R
Sbjct: 307 RSAMLRVAQR 316


>gi|325912968|ref|ZP_08175341.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners UPII 60-B]
 gi|325477648|gb|EGC80787.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners UPII 60-B]
          Length = 317

 Score =  183 bits (464), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 119/312 (38%), Positives = 176/312 (56%), Gaps = 17/312 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H  VLL + I  LN     V +DATFG GG++    K  SN  +I  D+D +A+   +++
Sbjct: 7   HYSVLLHETIDNLNLKNDGVYVDATFGGGGHASYLLKQLSNGHLIGFDQDEYAIELAKKS 66

Query: 78  MRDY-----KEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             +      K + SL    F  LQ  +       G+DG+ +DLGVSS Q D  +RGFS++
Sbjct: 67  FSEVLKANSKPKLSLVHDNFGNLQQNLAKLGFIDGIDGIYYDLGVSSPQFDQPERGFSYR 126

Query: 129 KSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
            +  LDMRM     + A  +VN  + K+L+ IL   G+EK A +IA  IV +R   P  T
Sbjct: 127 FNARLDMRMDQTKDLDAYKIVNTWSQKELSNILFKYGDEKYARQIAKNIVAKRAIKPITT 186

Query: 188 TQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T +L  +I++ +  F++    HPA +SFQA+RI VN+E+E L + L  A + LK GG + 
Sbjct: 187 TFELVDIIKEAIPAFARRTGGHPAKKSFQAIRIAVNDELEVLEKSLLEAIEILKPGGRIC 246

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           V++F SLED++VKK F   S  V   R M  IP +  P + + I++K +V T +++  N 
Sbjct: 247 VITFQSLEDKIVKKIFKKYSD-VDIPRGMPQIPDSLKPTL-KIISRKPIVATNKELEENN 304

Query: 305 RSRSAKLRAGMR 316
           RS SAKLR   +
Sbjct: 305 RSHSAKLRVAEK 316


>gi|220927929|ref|YP_002504838.1| S-adenosyl-methyltransferase MraW [Clostridium cellulolyticum H10]
 gi|263447445|sp|B8I6G6|RSMH_CLOCE RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|219998257|gb|ACL74858.1| S-adenosyl-methyltransferase MraW [Clostridium cellulolyticum H10]
          Length = 313

 Score =  183 bits (464), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 121/314 (38%), Positives = 168/314 (53%), Gaps = 31/314 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ I  LN     + +D T G  G+S    K +G    ++ LD+D FAV    +
Sbjct: 5   HTSVLLDECIEYLNINQEGIYVDGTIGGAGHSSEIYKRLGEKGCLVGLDQDSFAVETSIK 64

Query: 77  TMRDYKEQ--FSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            + + K    F +    F  ++      G   VDG++ DLGVSS Q+D   RGFS+Q   
Sbjct: 65  RLDEIKSNADFKVVNTNFKNIKSACSGLGINEVDGILLDLGVSSHQLDEASRGFSYQHDA 124

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+  S +SA DVVN+ + +D+ RI+   GEEK ASRIA  I + RQ+ P +TT D
Sbjct: 125 PLDMRMNTKSELSAYDVVNKYSEQDIYRIIRDFGEEKWASRIAKFITEARQNEPVETTYD 184

Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I+K V  S + +  HPA R+FQA+RI VNNE+  L + +      LK GG L +++
Sbjct: 185 LVDIIKKAVPSSARRDGPHPAKRTFQAIRIEVNNELGILNKTIEDCVDLLKRGGRLCIIT 244

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS-----------ITKKVVVPTQE 298
           FHSLEDR+VK          M    M+     P  F             I KK +V    
Sbjct: 245 FHSLEDRIVK----------MQYNKMVNPCTCPPAFPVCACGKKPKAVLINKKPIVSDIR 294

Query: 299 DVAFNRRSRSAKLR 312
           ++  N R+RSAKLR
Sbjct: 295 ELDKNPRARSAKLR 308


>gi|77166320|ref|YP_344845.1| methyltransferase [Nitrosococcus oceani ATCC 19707]
 gi|254435207|ref|ZP_05048714.1| S-adenosyl-methyltransferase MraW [Nitrosococcus oceani AFC27]
 gi|88909205|sp|Q3J781|RSMH_NITOC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|76884634|gb|ABA59315.1| methyltransferase [Nitrosococcus oceani ATCC 19707]
 gi|207088318|gb|EDZ65590.1| S-adenosyl-methyltransferase MraW [Nitrosococcus oceani AFC27]
          Length = 315

 Score =  183 bits (464), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 115/308 (37%), Positives = 182/308 (59%), Gaps = 11/308 (3%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFA 70
           ++ I  H PVLL + I  L      + +D TFG GG++++     S+   ++ +D+DP A
Sbjct: 3   NNEISSHQPVLLREAIQALAIRRDGLYIDGTFGRGGHAQAILAALSSEGRLLGVDKDPAA 62

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFS 126
           ++ G    +    +F++ QA+   L   V ++G    ++GV+FDLGVSS Q++  +RGFS
Sbjct: 63  IAAGHALAQK-DGRFTIVQASIGDLARVVSERGWLKRINGVLFDLGVSSPQLESAERGFS 121

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           F + GPLDMRM+ + G SA++ +  A  K++  +L + GEE+   RIA AI++ R+    
Sbjct: 122 FLRDGPLDMRMNPTVGQSAAEWLANAKEKEIAEVLRVYGEERYCRRIARAIIQARELNSL 181

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
             T+ L+ ++ K +      R+HPATRSFQA+RIF+N+E+EEL   L  A  AL   G L
Sbjct: 182 TRTKQLAEVVAKAIP-RWERRMHPATRSFQAIRIFINHELEELRAALEQALAALAVKGRL 240

Query: 246 IVVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
            V+SFHSLEDR+VK+FF  ++ G+ +     +           +  K + P  E++A N 
Sbjct: 241 AVISFHSLEDRIVKRFFREKARGEELPPDLPVMQKDFQQASLKVLGKPIWPVPEEIAHNP 300

Query: 305 RSRSAKLR 312
           R+RSA+LR
Sbjct: 301 RARSARLR 308


>gi|109947477|ref|YP_664705.1| S-adenosyl-methyltransferase MraW [Helicobacter acinonychis str.
           Sheeba]
 gi|122973304|sp|Q17XC0|RSMH_HELAH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|109714698|emb|CAJ99706.1| S-adenosyl-methyltransferase [Helicobacter acinonychis str. Sheeba]
          Length = 308

 Score =  183 bits (464), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 113/301 (37%), Positives = 173/301 (57%), Gaps = 14/301 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVSCGQET 77
           H  VLL++V+    P    V +D T G GG+S++    K    +I +D+D  A    +E 
Sbjct: 8   HKSVLLQEVLQAFAPLEKGVFIDCTLGLGGHSKALLSQKPHLKLIGIDKDKHAQEIAKER 67

Query: 78  MRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++ ++  + +    F++  ++ +   G  + GV+ DLGVSS+Q+D  +RGF+F  S  LD
Sbjct: 68  LKAFEGCYHILSGGFAKRFKEALETHGEQIKGVLVDLGVSSLQLDDDNRGFNFH-SHALD 126

Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM   S ++A  V+N   +  L +I    G  K+  +IAH IV+RR   PF+  +DLS 
Sbjct: 127 MRMDLESELNAQKVINSYCIVALEKIFKDYGAIKEYKKIAHHIVERRAKKPFKDAKDLSD 186

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
            +      SKN +IHPAT  FQA+RI VN E+EEL + L+ A K    G +L V+SFHSL
Sbjct: 187 FLSS---LSKNKKIHPATLVFQAIRIEVNRELEELKEFLQDAMKL--KGAILCVISFHSL 241

Query: 254 EDRLVKKFFASRSGKVM--AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           ED LVK  F + +   +  A+      + + A+ + +TKK + P+ E++  NRRSRSAK+
Sbjct: 242 EDALVKNAFKNYAKNCICDALNFKCTCSNNHALGEILTKKPITPSLEEIKHNRRSRSAKM 301

Query: 312 R 312
           R
Sbjct: 302 R 302


>gi|258404866|ref|YP_003197608.1| S-adenosyl-methyltransferase MraW [Desulfohalobium retbaense DSM
           5692]
 gi|257797093|gb|ACV68030.1| S-adenosyl-methyltransferase MraW [Desulfohalobium retbaense DSM
           5692]
          Length = 332

 Score =  183 bits (464), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 124/309 (40%), Positives = 176/309 (56%), Gaps = 14/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77
           H  VLL +V+  L P PG   LD T G GG++ +  +    S V+ LDRD  A+   +  
Sbjct: 18  HQSVLLAEVLQALKPRPGGRYLDGTLGLGGHAEAILEHAPDSEVLGLDRDGAALDAAEAR 77

Query: 78  MRDYKEQFSLFQATFSQL---QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +  + ++  + Q +FS+     D +  + VDG + DLGVSS+Q+D  +RGFSF   GPLD
Sbjct: 78  LDRFGDRVHMAQISFSRFVSALDQLGWETVDGALIDLGVSSLQLDSPERGFSFLHDGPLD 137

Query: 135 MRMSCSGIS---ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           MRM  SG+    A  ++N+A+ + L RI+   GEE  A RIA  IV  R+  P +TT  L
Sbjct: 138 MRMD-SGMGVPPAKSLLNKASQETLRRIIRDYGEEPMAGRIAKRIVMTREKTPLETTLQL 196

Query: 192 SSLIQKTVYFSK---NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           + ++++  Y +K    +R HPAT++FQALRI VN E+EEL   L +    L  GG L V+
Sbjct: 197 AHVVEQ-AYPAKRRAQSRNHPATKTFQALRIAVNKELEELEAFLEAIPDRLCVGGRLAVI 255

Query: 249 SFHSLEDRLVK-KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           SFHSLEDR+VK +      G        I    +    Q +TKK ++P+ E++  N RSR
Sbjct: 256 SFHSLEDRIVKHRLRREARGCRCPKEQPICVCGYRPRLQVLTKKPLLPSAEEMEANSRSR 315

Query: 308 SAKLRAGMR 316
           SAKLR   R
Sbjct: 316 SAKLRVAER 324


>gi|221194757|ref|ZP_03567814.1| S-adenosyl-methyltransferase MraW [Atopobium rimae ATCC 49626]
 gi|221185661|gb|EEE18051.1| S-adenosyl-methyltransferase MraW [Atopobium rimae ATCC 49626]
          Length = 328

 Score =  183 bits (464), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 121/322 (37%), Positives = 178/322 (55%), Gaps = 23/322 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H PV+L +V+  LNP PG+++ D T G  G++    K        I +D+D  A      
Sbjct: 12  HQPVMLAEVLQQLNPKPGEIVCDCTLGGAGHTVELAKRIVPDGLSIGIDQDDMAHE--AA 69

Query: 77  TMRDYKE----QFSLFQATFSQLQDY-----VPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
             R  KE    +F   +  F  L        VP  GVD  +FD+GVSS Q+D  +RGFS+
Sbjct: 70  AARIAKEVPTAEFLPLKGNFGDLDTLLVSAEVP--GVDCFLFDIGVSSPQLDIPERGFSY 127

Query: 128 QKSGPLDMRMSCS--GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
            +  PLDMRM       +A +VVN     DLTRIL + G+E  A RIAH IV+ R++AP 
Sbjct: 128 HEDAPLDMRMDPGKQTPTAQEVVNTYTEADLTRILRVFGDETFAPRIAHRIVEVRKTAPI 187

Query: 186 QTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           +TT  L  +I+ ++   ++ +  HPA ++FQALRI VN+E++ L +GLRSA      GG 
Sbjct: 188 KTTLQLVEVIKASIPAAARRHGGHPARKTFQALRIEVNHELDVLERGLRSAIAWANPGGR 247

Query: 245 LIVVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
           + V+++HSLEDR+VK  F+  S G +      +    H  +    TKK +  T E++  N
Sbjct: 248 ICVIAYHSLEDRIVKHVFSELSQGCICPPDLPVCVCGHVPIVDVKTKKPLTATSEEITQN 307

Query: 304 RRSRSAKLRAGMRTVERSIEDD 325
            R+RSA +R     V+R+ E++
Sbjct: 308 PRARSALMRVA---VKRNTENE 326


>gi|59801880|ref|YP_208592.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae FA 1090]
 gi|268601983|ref|ZP_06136150.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae PID18]
 gi|268604315|ref|ZP_06138482.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae PID1]
 gi|268687198|ref|ZP_06154060.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae
           SK-93-1035]
 gi|293398479|ref|ZP_06642657.1| methylase MraW [Neisseria gonorrhoeae F62]
 gi|68565408|sp|Q5F6K7|RSMH_NEIG1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|59718775|gb|AAW90180.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
 gi|268586114|gb|EEZ50790.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae PID18]
 gi|268588446|gb|EEZ53122.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae PID1]
 gi|268627482|gb|EEZ59882.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae
           SK-93-1035]
 gi|291610950|gb|EFF40047.1| methylase MraW [Neisseria gonorrhoeae F62]
          Length = 318

 Score =  183 bits (464), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 117/311 (37%), Positives = 174/311 (55%), Gaps = 20/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMG--SNVIALDRDPFAVSCGQE 76
           H+ VLL + +  L      V +D TFG GG+SR    ++G    +I  D+DP A++  +E
Sbjct: 9   HITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFDKDPQAIAVAEE 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             R  K +  +    F+  Q  +   G   VDG +FDLG+SS QID G RGFSF+   PL
Sbjct: 69  LARSDK-RVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGSRGFSFRFDAPL 127

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  + G+SA++ +  A+ +DL  ++   GEE+ + +I  AIV +R  +P  TT+ L+
Sbjct: 128 DMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIVRAIVAQRAESPIDTTRKLA 187

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            ++ + V   +  +  PATR+FQA+RIF+N E+EE+   L      LK GG L V++FHS
Sbjct: 188 QIVAQNVRTRERGQ-DPATRTFQAIRIFINRELEEVGAVLPQVMCRLKEGGRLAVIAFHS 246

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAH------PAVFQSITKKVVVPTQEDVAFNRRS 306
           LEDR+VK+F      K  +    +PS A       P     I  + + P + ++A N R+
Sbjct: 247 LEDRIVKQFV-----KKYSQHEPLPSWAAVREADLPDPPLKIVGRALKPGEAEIAANPRA 301

Query: 307 RSAKLRAGMRT 317
           RSA LR   RT
Sbjct: 302 RSAVLRVAERT 312


>gi|114777870|ref|ZP_01452801.1| methyltransferase [Mariprofundus ferrooxydans PV-1]
 gi|114551861|gb|EAU54401.1| methyltransferase [Mariprofundus ferrooxydans PV-1]
          Length = 331

 Score =  183 bits (464), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 115/310 (37%), Positives = 170/310 (54%), Gaps = 10/310 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
           +H+PVL +  I  +   P    +D TFG GG+SR      S    ++A DRDP AV+ G+
Sbjct: 9   EHIPVLRDAFIDAIFSDPDGCYVDCTFGRGGHSRQLLARLSEKGRLLAFDRDPDAVAAGE 68

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E +     +F++  A F++L + +  +G   V G+ FDLGVSS Q+D   RGFSF++ GP
Sbjct: 69  E-LAQQDARFAIEHADFARLGEVLDARGWCQVTGIGFDLGVSSPQVDQAQRGFSFRQDGP 127

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G   S  +   + ++L  IL   G+E+ A RIA AI+K        TT DL
Sbjct: 128 LDMRMDTTQGQPLSRRLEHVSERELIDILRRFGDERYAQRIARAILKAMHDGALTTTSDL 187

Query: 192 SSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
            +     V   ++    HPATR+FQALRI+VN+E++++  G+ +A   L+ GG L V+SF
Sbjct: 188 ENACFHAVPKQARYGSTHPATRTFQALRIWVNDEMQQIDDGISAAVDHLQPGGRLAVISF 247

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HS EDR ++    +R         M +         + + KK V P + +VA N RSRS+
Sbjct: 248 HSGEDRRIRDLIEARVHACTCPPQMPVCVCGKKPTMRWLQKKPVRPDEGEVAANPRSRSS 307

Query: 310 KLRAGMRTVE 319
            LR   R  +
Sbjct: 308 MLRVAQRLTD 317


>gi|331005086|ref|ZP_08328490.1| S-adenosyl-methyltransferase MraW [gamma proteobacterium IMCC1989]
 gi|330421141|gb|EGG95403.1| S-adenosyl-methyltransferase MraW [gamma proteobacterium IMCC1989]
          Length = 314

 Score =  183 bits (464), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 121/308 (39%), Positives = 177/308 (57%), Gaps = 24/308 (7%)

Query: 20  HVPVLL-EKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPFAVSCGQ 75
           H  VLL E V AL+    G   +D TFG GG+SR         + ++A+D+D  A++   
Sbjct: 10  HQSVLLHESVDALITDVNG-FYVDGTFGRGGHSREVLLRLSEDAQLMAVDKDEQAIAEAD 68

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +   D K +FS+   +FSQL  ++ +      V+G++ DLGVSS Q+D   RGFSF + G
Sbjct: 69  KQFSDEK-RFSIRHGSFSQLNQWLVEIEKLGKVNGILLDLGVSSPQLDEAHRGFSFMQDG 127

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+   G +A++ +N A+ +D+ R+L   GEE+ + RIA AIV  RQ  PF TT +
Sbjct: 128 PLDMRMNRTKGETAAEWINSASQEDIARVLKEYGEERFSKRIARAIVDHRQEQPFATTHE 187

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           LS ++ +     +  + HPATR+FQA+RI +N+E+ +L   L  A  AL  GG L+V+SF
Sbjct: 188 LSKVVTEANPAWEKGK-HPATRAFQAIRIHINDELSDLDVILEQALAALAVGGRLVVISF 246

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK------KVVVPTQEDVAFNR 304
           HSLEDR VK+F      +V   R  +P    P   + + K      KV      ++A N 
Sbjct: 247 HSLEDRRVKRFIRQ---QVQGDR--LPMGV-PVRDEQLNKRLRSLGKVTKAGASELAHNP 300

Query: 305 RSRSAKLR 312
           R+RSA +R
Sbjct: 301 RARSAVMR 308


>gi|115350509|ref|YP_772348.1| S-adenosyl-methyltransferase MraW [Burkholderia ambifaria AMMD]
 gi|123322723|sp|Q0BIK9|RSMH_BURCM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|115280497|gb|ABI86014.1| S-adenosyl-methyltransferase MraW [Burkholderia ambifaria AMMD]
          Length = 313

 Score =  183 bits (464), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 118/312 (37%), Positives = 181/312 (58%), Gaps = 21/312 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  + +D TFG GG+SR+       G  +IA D+DP A+   Q 
Sbjct: 7   HRTVLLDEAVESLVTRPDGIYVDGTFGRGGHSRAVLARLAEGGRLIAFDKDPRAIETAQ- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             R    +FS+   +F+ ++D +  +G++   GV+ DLGVSS Q+D   RGFSF+  GPL
Sbjct: 66  --RIEDARFSIVHDSFASMRDALAARGIEKVSGVLLDLGVSSPQVDDPARGFSFRADGPL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTT 188
           DMRM  + G SA++ + +A+V++LT ++   GEE+ A +IA A+V RR  +    P  TT
Sbjct: 124 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDTT 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ ++   V   +  +  PATR+FQA+RI VN E+ +L   L +A   L+ GG L+V+
Sbjct: 184 GELAQIVGHVVKTREKGK-DPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVI 242

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNRR 305
           SFHSLEDR+VK+F  + +    AV   +P  A      S   K++    P++ +V  N R
Sbjct: 243 SFHSLEDRIVKRFMQAHA-SAPAVDRRLPIRA--VDLPSPPLKIISRQFPSEAEVVANPR 299

Query: 306 SRSAKLRAGMRT 317
           +RSA +R   R 
Sbjct: 300 ARSAVMRIAERV 311


>gi|312873217|ref|ZP_07733273.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LEAF
           2052A-d]
 gi|312874604|ref|ZP_07734628.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LEAF
           2053A-b]
 gi|325911728|ref|ZP_08174135.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners UPII 143-D]
 gi|311089834|gb|EFQ48254.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LEAF
           2053A-b]
 gi|311091228|gb|EFQ49616.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LEAF
           2052A-d]
 gi|325476494|gb|EGC79653.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners UPII 143-D]
          Length = 317

 Score =  183 bits (464), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 119/312 (38%), Positives = 176/312 (56%), Gaps = 17/312 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H  VLL + I  LN     V +DATFG GG++    K  SN  +I  D+D +A+   +++
Sbjct: 7   HYSVLLHETIDNLNLKNDGVYVDATFGGGGHASYLLKQLSNGHLIGFDQDEYAIELAKKS 66

Query: 78  MRDY-----KEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             +      K + SL    F  LQ  +       G+DG+ +DLGVSS Q D  +RGFS++
Sbjct: 67  FSEVLKANSKPKLSLVHDNFGNLQQNLAKLGFIDGIDGIYYDLGVSSPQFDQPERGFSYR 126

Query: 129 KSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
            +  LDMRM     + A  +VN  + K+L+ IL   G+EK A +IA  IV +R   P  T
Sbjct: 127 FNARLDMRMDQTKDLDAYKIVNTWSQKELSNILFKYGDEKYARQIAKNIVAKRAIKPITT 186

Query: 188 TQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T +L  +I++ +  F++    HPA +SFQA+RI VN+E+E L + L  A + LK GG + 
Sbjct: 187 TFELVDIIKEAIPAFARRTGGHPAKKSFQAIRIAVNDELEVLEKSLLDAIEILKPGGRIC 246

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           V++F SLED++VKK F   S  V   R M  IP +  P + + I++K +V T +++  N 
Sbjct: 247 VITFQSLEDKIVKKIFKKYSD-VDIPRGMPQIPDSLKPTL-KIISRKPIVATNKELEENN 304

Query: 305 RSRSAKLRAGMR 316
           RS SAKLR   +
Sbjct: 305 RSHSAKLRVAEK 316


>gi|227524041|ref|ZP_03954090.1| S-adenosyl-methyltransferase [Lactobacillus hilgardii ATCC 8290]
 gi|227088780|gb|EEI24092.1| S-adenosyl-methyltransferase [Lactobacillus hilgardii ATCC 8290]
          Length = 315

 Score =  183 bits (464), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 111/309 (35%), Positives = 174/309 (56%), Gaps = 12/309 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77
           HV VLL + +  L+  P    +DAT G GG++    K     ++ + D+D  A+S  Q+ 
Sbjct: 6   HVTVLLHEAVDGLDVDPNGTYVDATLGGGGHTTEILKRIDKGHLYSFDQDEEAISYNQQH 65

Query: 78  MRDYKE--QFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           +R Y E  + +L    F  ++  + D+G+   DG+V+DLGVSS Q D   RGFS++    
Sbjct: 66  LRQYVENDKLTLIHDNFRNIKVALADQGISKIDGIVYDLGVSSPQFDEAGRGFSYRFEAH 125

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM     + A  V+N+   + L RI    GEEK + +IA  I + R+  P  TT DL
Sbjct: 126 LDMRMDQDNPVDAWKVINEWPYEKLVRIFYRYGEEKFSKQIARRIERTREDHPINTTTDL 185

Query: 192 SSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
            +LI++ +   ++ +  HPA + FQA+RI VN+E+  L   L  + + L  GG + V++F
Sbjct: 186 VTLIKEAIPAAARRHGGHPAKKVFQAVRIAVNDELSALEDSLEQSLELLAVGGRISVITF 245

Query: 251 HSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
            SLEDRLVK  F  ++   ++     +IP    P  ++ IT+K ++P ++++A N R+ S
Sbjct: 246 QSLEDRLVKTMFKEKASLPELPPNLPVIPKELQPK-YKLITRKPIIPNEDELADNHRAHS 304

Query: 309 AKLRAGMRT 317
           AKLR   RT
Sbjct: 305 AKLRIIERT 313


>gi|116688575|ref|YP_834198.1| S-adenosyl-methyltransferase MraW [Burkholderia cenocepacia HI2424]
 gi|170731875|ref|YP_001763822.1| S-adenosyl-methyltransferase MraW [Burkholderia cenocepacia MC0-3]
 gi|263446896|sp|B1JUW4|RSMH_BURCC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446902|sp|A0K478|RSMH_BURCH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|116646664|gb|ABK07305.1| S-adenosyl-methyltransferase MraW [Burkholderia cenocepacia HI2424]
 gi|169815117|gb|ACA89700.1| S-adenosyl-methyltransferase MraW [Burkholderia cenocepacia MC0-3]
          Length = 313

 Score =  183 bits (464), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 121/311 (38%), Positives = 185/311 (59%), Gaps = 21/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGS--NVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  V +D TFG GG+SR+   ++ S   +IA D+DP A+   Q 
Sbjct: 7   HRTVLLDEAVESLVTRPDGVYVDGTFGRGGHSRAVLARLASAGRLIAFDKDPRAIETAQ- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + D +  FS+   +F+ ++D +  +GV+   GV+ DLGVSS Q+D   RGFSF+  GPL
Sbjct: 66  GIEDAR--FSIVHDSFASMRDALAARGVEKVSGVLLDLGVSSPQVDDPARGFSFRADGPL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTT 188
           DMRM  + G SA++ + +A+V++LT ++   GEE+ A +IA A+V RR  +    P  TT
Sbjct: 124 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDTT 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ ++   V   +  +  PATR+FQA+RI VN E+ +L   L +A   L+ GG L+V+
Sbjct: 184 GELAQIVGHVVKTREKGK-DPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVI 242

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNRR 305
           SFHSLEDR+VK+F  + +    AV   +P  A      S   K++    P++ +VA N R
Sbjct: 243 SFHSLEDRIVKRFMQAHA-SAPAVDRRLPIRA--VDLPSPPLKIISRQFPSEAEVAANPR 299

Query: 306 SRSAKLRAGMR 316
           +RSA +R   R
Sbjct: 300 ARSAVMRIAER 310


>gi|312871981|ref|ZP_07732063.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LEAF
           2062A-h1]
 gi|311092558|gb|EFQ50920.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LEAF
           2062A-h1]
          Length = 315

 Score =  183 bits (464), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 119/312 (38%), Positives = 176/312 (56%), Gaps = 17/312 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H  VLL + I  LN     V +DATFG GG++    K  SN  +I  D+D +A+   +++
Sbjct: 5   HYSVLLHETIDNLNLKNDGVYVDATFGGGGHASYLLKQLSNGHLIGFDQDEYAIELAKKS 64

Query: 78  MRDY-----KEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             +      K + SL    F  LQ  +       G+DG+ +DLGVSS Q D  +RGFS++
Sbjct: 65  FSEVLKANSKPKLSLVHDNFGNLQQNLAKLGFIDGIDGIYYDLGVSSPQFDQPERGFSYR 124

Query: 129 KSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
            +  LDMRM     + A  +VN  + K+L+ IL   G+EK A +IA  IV +R   P  T
Sbjct: 125 FNARLDMRMDQTKDLDAYKIVNTWSQKELSNILFKYGDEKYARQIAKNIVAKRAIKPITT 184

Query: 188 TQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T +L  +I++ +  F++    HPA +SFQA+RI VN+E+E L + L  A + LK GG + 
Sbjct: 185 TFELVDIIKEAIPAFARRTGGHPAKKSFQAIRIAVNDELEVLEKSLLDAIEILKPGGRIC 244

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           V++F SLED++VKK F   S  V   R M  IP +  P + + I++K +V T +++  N 
Sbjct: 245 VITFQSLEDKIVKKIFKKYSD-VDIPRGMPQIPDSLKPTL-KIISRKPIVATNKELEENN 302

Query: 305 RSRSAKLRAGMR 316
           RS SAKLR   +
Sbjct: 303 RSHSAKLRVAEK 314


>gi|113478175|ref|YP_724236.1| S-adenosyl-methyltransferase MraW [Trichodesmium erythraeum IMS101]
 gi|123351672|sp|Q10VG1|RSMH_TRIEI RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|110169223|gb|ABG53763.1| S-adenosyl-methyltransferase MraW [Trichodesmium erythraeum IMS101]
          Length = 283

 Score =  183 bits (464), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 113/299 (37%), Positives = 166/299 (55%), Gaps = 28/299 (9%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76
           +H+PVL  ++I+ L   P  + LDAT G GG+++        V  +A+D+D  A+   Q 
Sbjct: 2   NHIPVLSSELISGLVIRPRGLYLDATLGFGGHTKLILAAAPEVKVVAIDQDKQALDSSQT 61

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK-GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
            +  Y        + F+   DY P     DG++ DLG++S+Q+D  +RGFSF+  G LDM
Sbjct: 62  LLASYNSNIQFCHSNFA---DYDPQNLKFDGILADLGINSVQLDTPERGFSFRHQGKLDM 118

Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM+    I+A+ ++N      L  I    GEE+ + RIA  I++ R   P +TT +L+ +
Sbjct: 119 RMNQQQTITAAKIINHWEEVKLANIFYTYGEERLSRRIARKIIESR---PLETTTELAEV 175

Query: 195 IQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           +   V Y  +  RIHPATR FQALRI VN E+  L   L++A   LK GG + ++SFHSL
Sbjct: 176 VANCVPYKYRYGRIHPATRVFQALRIEVNQELSRLETFLKNAPHWLKIGGRIGIISFHSL 235

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           EDRLVK   + R+  ++ V               +TKK + P   +VA N R+RSAKLR
Sbjct: 236 EDRLVKH--SLRNASILKV---------------LTKKPIQPQDNEVAINPRARSAKLR 277


>gi|259501653|ref|ZP_05744555.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Lactobacillus iners DSM 13335]
 gi|302191140|ref|ZP_07267394.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners AB-1]
 gi|259166938|gb|EEW51433.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Lactobacillus iners DSM 13335]
          Length = 315

 Score =  183 bits (464), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 119/312 (38%), Positives = 176/312 (56%), Gaps = 17/312 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H  VLL + I  LN     V +DATFG GG++    K  SN  +I  D+D +A+   +++
Sbjct: 5   HYSVLLHETIDNLNLKNDGVYVDATFGGGGHASYLLKQLSNGHLIGFDQDEYAIELAKKS 64

Query: 78  MRDY-----KEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             +      K + SL    F  LQ  +       G+DG+ +DLGVSS Q D  +RGFS++
Sbjct: 65  FSEVLKANSKPKLSLVHDNFGNLQQNLAKLGFIDGIDGIYYDLGVSSPQFDQPERGFSYR 124

Query: 129 KSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
            +  LDMRM     + A  +VN  + K+L+ IL   G+EK A +IA  IV +R   P  T
Sbjct: 125 FNARLDMRMDQTKDLDAYKIVNTWSQKELSNILFKYGDEKYARQIAKNIVAKRAIKPITT 184

Query: 188 TQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T +L  +I++ +  F++    HPA +SFQA+RI VN+E+E L + L  A + LK GG + 
Sbjct: 185 TFELVDIIKEAIPAFARRTGGHPAKKSFQAIRIAVNDELEVLEKSLLDAIEILKPGGRIC 244

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           V++F SLED++VKK F   S  V   R M  IP +  P + + I++K +V T +++  N 
Sbjct: 245 VITFQSLEDKIVKKIFKKYSD-VDIPRGMPQIPDSLKPTL-KIISRKPIVATDKELEENN 302

Query: 305 RSRSAKLRAGMR 316
           RS SAKLR   +
Sbjct: 303 RSHSAKLRVAEK 314


>gi|300702954|ref|YP_003744556.1| s-adenosyl-dependent methyl transferase [Ralstonia solanacearum
           CFBP2957]
 gi|299070617|emb|CBJ41912.1| S-adenosyl-dependent methyl transferase [Ralstonia solanacearum
           CFBP2957]
          Length = 319

 Score =  182 bits (463), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 120/313 (38%), Positives = 181/313 (57%), Gaps = 21/313 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VL ++ +  L      + +D TFG GG+SR   +    G  +IA D+DP A++    
Sbjct: 11  HQTVLRDEAVDALLWRDDGIYIDGTFGRGGHSRLLLERLGPGGRLIAFDKDPAAITEAG- 69

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           T+ D +  F++   +F+ L   +  +G   V GV+ DLG+SS QID G RGFSF+  GPL
Sbjct: 70  TVEDAR--FAIEHDSFAHLDAALDARGIGRVAGVLLDLGISSPQIDEGARGFSFRMDGPL 127

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTT 188
           DMRM  + GI+A+  + +A+ +D+ R++   GEE+ A +IA AIV RR  +    P   T
Sbjct: 128 DMRMDTTRGITAAQWLAEADERDIARVIRDYGEERFAVQIAKAIVARRSESGTRGPLDRT 187

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L++L+ + V   +  +  PATR+FQALRI VN E+ +L  GL++A + L+ GG L+V+
Sbjct: 188 SELAALVAQAVKTREKGQ-DPATRTFQALRIHVNQELADLETGLKAAFERLEQGGRLVVI 246

Query: 249 SFHSLEDRLVKKF---FASRSGKVMAVRHMIPSNAH--PAVFQSITKKVVVPTQEDVAFN 303
           SFHSLEDR+VK+F    A             P  AH  PA    +  + V P++ +V+ N
Sbjct: 247 SFHSLEDRIVKRFMQALARPEQSAAPEMRRAPLRAHELPAPQLRLLGR-VRPSEAEVSAN 305

Query: 304 RRSRSAKLRAGMR 316
            R+RSA +R   R
Sbjct: 306 PRARSAIMRVAER 318


>gi|226307047|ref|YP_002767007.1| methyltransferase MraW [Rhodococcus erythropolis PR4]
 gi|262825456|sp|C1A0Y3|RSMH_RHOE4 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|226186164|dbj|BAH34268.1| methyltransferase MraW [Rhodococcus erythropolis PR4]
          Length = 332

 Score =  182 bits (463), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 115/325 (35%), Positives = 176/325 (54%), Gaps = 30/325 (9%)

Query: 20  HVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPF 69
           HVPVLL +   LL PA         G  ++DAT G GG+S  F     G ++I LDRD  
Sbjct: 12  HVPVLLHRADDLLGPAITAVGDGGEGAYMIDATLGLGGHSEFFLGKYPGLHLIGLDRDTN 71

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSSMQIDCGDR 123
           A+    E +  + ++ +    T+  ++D +   G      V  ++FDLGVSSMQ+D  DR
Sbjct: 72  ALRIASERLAPFADRTTFVHTTYDGIEDALEQAGLPSTESVHAILFDLGVSSMQLDEADR 131

Query: 124 GFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GF++    PLDMRM  + G++A++V+N  +  DL RIL   GEE+ A +IA  I+++R+ 
Sbjct: 132 GFAYSIDAPLDMRMDQTVGLTAAEVLNTYSHGDLARILSTYGEERFAGKIASEILRQRER 191

Query: 183 APFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            PF T+  L  L+ +T+   ++    HPA R+FQALRI VN E++ L   + +   AL  
Sbjct: 192 EPFTTSAALVELLYRTIPAATRRTGGHPAKRTFQALRIEVNAELDSLRAAVPAGLDALAV 251

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRS------GKVMAVRHMIPSNAHPAVFQSITKKVVVP 295
           GG ++ +S+ SLEDR+VK     RS      G  + +  M P       F+ +T+     
Sbjct: 252 GGRVVFMSYQSLEDRVVKAELVPRSKSTSPEGLPVELPGMGPE------FRILTRGAERA 305

Query: 296 TQEDVAFNRRSRSAKLRAGMRTVER 320
           +++++  N RS   +LRA  R   R
Sbjct: 306 SEQEIEENPRSAPVRLRAAERISRR 330


>gi|329921076|ref|ZP_08277599.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners SPIN 1401G]
 gi|328934983|gb|EGG31472.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners SPIN 1401G]
          Length = 315

 Score =  182 bits (463), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 119/312 (38%), Positives = 176/312 (56%), Gaps = 17/312 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H  VLL + I  LN     V +DATFG GG++    K  SN  +I  D+D +A+   +++
Sbjct: 5   HYSVLLHETIDNLNLKNDGVYVDATFGGGGHASYLLKQLSNGHLIGFDQDEYAIELAKKS 64

Query: 78  MRDY-----KEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             +      K + SL    F  LQ  +       G+DG+ +DLGVSS Q D  +RGFS++
Sbjct: 65  FSEVLKANSKPKLSLVHDNFGNLQQNLAKLGFIDGIDGIYYDLGVSSPQFDQPERGFSYR 124

Query: 129 KSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
            +  LDMRM     + A  +VN  + K+L+ IL   G+EK A +IA  IV +R   P  T
Sbjct: 125 FNARLDMRMDQTKDLDAYKIVNTWSQKELSNILFKYGDEKYARQIAKNIVAKRAIKPITT 184

Query: 188 TQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T +L  +I++ +  F++    HPA +SFQA+RI VN+E+E L + L  A + LK GG + 
Sbjct: 185 TFELVDIIKEAIPAFARRTGGHPAKKSFQAIRIAVNDELEVLEKSLLEAIEILKPGGRIC 244

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           V++F SLED++VKK F   S  V   R M  IP +  P + + I++K +V T +++  N 
Sbjct: 245 VITFQSLEDKIVKKIFKKYSD-VDIPRGMPQIPDSLKPTL-KIISRKPIVATDKELEENN 302

Query: 305 RSRSAKLRAGMR 316
           RS SAKLR   +
Sbjct: 303 RSHSAKLRVAEK 314


>gi|309803099|ref|ZP_07697196.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LactinV
           11V1-d]
 gi|308164607|gb|EFO66857.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LactinV
           11V1-d]
          Length = 315

 Score =  182 bits (463), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 119/312 (38%), Positives = 176/312 (56%), Gaps = 17/312 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H  VLL + I  LN     V +DATFG GG++    K  SN  +I  D+D +A+   +++
Sbjct: 5   HYSVLLHETIDNLNLKNDGVYVDATFGGGGHASYLLKQLSNGHLIGFDQDEYAIELAKKS 64

Query: 78  MRDY-----KEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             +      K + SL    F  LQ  +       G+DG+ +DLGVSS Q D  +RGFS++
Sbjct: 65  FSEVLKANSKPKLSLVHDNFGNLQQNLAKLGFIDGIDGIYYDLGVSSPQFDQPERGFSYR 124

Query: 129 KSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
            +  LDMRM     + A  +VN  + K+L+ IL   G+EK A +IA  IV +R   P  T
Sbjct: 125 FNARLDMRMDQTKDLDAYKIVNTWSQKELSNILFKYGDEKYARQIAKNIVAKRAIKPITT 184

Query: 188 TQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T +L  +I++ +  F++    HPA +SFQA+RI VN+E+E L + L  A + LK GG + 
Sbjct: 185 TFELVDIIKEAIPAFARRTGGHPAKKSFQAIRIAVNDELEVLEKSLLDAIEILKPGGRIC 244

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           V++F SLED++VKK F   S  V   R M  IP +  P + + I++K +V T +++  N 
Sbjct: 245 VITFQSLEDKIVKKIFKKYSD-VDIPRGMPQIPDSLRPTL-KIISRKPIVATDKELEENN 302

Query: 305 RSRSAKLRAGMR 316
           RS SAKLR   +
Sbjct: 303 RSHSAKLRVAEK 314


>gi|268318248|ref|YP_003291967.1| S-adenosyl-methyltransferase MraW [Rhodothermus marinus DSM 4252]
 gi|262335782|gb|ACY49579.1| S-adenosyl-methyltransferase MraW [Rhodothermus marinus DSM 4252]
          Length = 327

 Score =  182 bits (463), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 114/310 (36%), Positives = 175/310 (56%), Gaps = 17/310 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           HVPVL + V+  L   P    +DAT G GG++ +          VI +DRDP A+   + 
Sbjct: 21  HVPVLWKAVVEGLVTDPAGCYVDATIGGGGHAAALLDALAPEGRVIGIDRDPEALEAVRR 80

Query: 77  TMRDYKE--QFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            + D  E  +  L Q  F+ L+  +   GV   DG++ DLGVSS Q+D   RGFSFQ  G
Sbjct: 81  RLSDAIEAGRLQLVQGNFADLEAILDRLGVAQIDGLLLDLGVSSHQLDEALRGFSFQAEG 140

Query: 132 PLDMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
           PLDMRM  +  G +A+ ++ + +  +L  +L   GEE +A ++A AI + R   P +TT 
Sbjct: 141 PLDMRMDPTSPGPTAAQLLERWSEYELAEVLRRYGEEPRARKLARAICRAR---PIRTTA 197

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           +L+ ++++ V  S         R FQALRI VN+E++ L + L +A + ++ GG L+V+S
Sbjct: 198 ELAEVVRREV--SPKEATKTLARVFQALRIAVNDELQALERALEAATRRVRPGGRLVVLS 255

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           +HSLEDR VK+F    + K   VR        P  ++ +T++ + P+ ++VA N R+RSA
Sbjct: 256 YHSLEDRRVKRFLRYGNLKGEPVRDFYGRLIAP--WRPLTRRAIRPSDDEVAANPRARSA 313

Query: 310 KLRAGMRTVE 319
           +LR   R  E
Sbjct: 314 RLRIAERVAE 323


>gi|224541552|ref|ZP_03682091.1| hypothetical protein CATMIT_00722 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525519|gb|EEF94624.1| hypothetical protein CATMIT_00722 [Catenibacterium mitsuokai DSM
           15897]
          Length = 315

 Score =  182 bits (463), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 111/303 (36%), Positives = 172/303 (56%), Gaps = 10/303 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYS-RSFCKMGS-NVIALDRDPFAVSCGQE 76
           +H  VLL++ I  LN     + +D T G GG+S R   K+ + ++   D+D  A+   +E
Sbjct: 6   EHYSVLLDETIDALNIKEDGIYVDCTLGGGGHSSRILEKLTTGHLYCFDQDAHAIEAARE 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            M    + F++  A F +++  +  +GV   DG+VFDLGVSS Q D  +RGFS+     L
Sbjct: 66  RMSQISDNFTIIHANFKEIKARLSMEGVYKVDGIVFDLGVSSPQFDNAERGFSYNTDARL 125

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+    +SA +VVN  + +DL  IL    +EK A  IA  I K RQ  P +TT +L 
Sbjct: 126 DMRMNQEQPLSAYEVVNNYSYQDLVTILYKYADEKFAKSIARMIEKERQVKPIETTFELV 185

Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +++K +   ++    HPA R+FQA+RI VN+E+    + L  +   L  GG + V+SFH
Sbjct: 186 EIVKKAIPARARRTGGHPAKRTFQAIRIEVNDELNVFERALTDSLDLLNVGGRVAVISFH 245

Query: 252 SLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLED++ K  F  ++    +     +IP    P  F+ +T+K +V  +++++ NRRS SA
Sbjct: 246 SLEDKITKYMFNEKTAVPDLPMGMPVIPEEYQPH-FKKVTRKPIVADEKELSENRRSHSA 304

Query: 310 KLR 312
           KLR
Sbjct: 305 KLR 307


>gi|229490464|ref|ZP_04384305.1| S-adenosyl-methyltransferase MraW [Rhodococcus erythropolis SK121]
 gi|229322754|gb|EEN88534.1| S-adenosyl-methyltransferase MraW [Rhodococcus erythropolis SK121]
          Length = 336

 Score =  182 bits (463), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 115/325 (35%), Positives = 176/325 (54%), Gaps = 30/325 (9%)

Query: 20  HVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPF 69
           HVPVLL +   LL PA         G  ++DAT G GG+S  F     G ++I LDRD  
Sbjct: 16  HVPVLLHRADDLLGPAITAVGDGGAGAYMIDATLGLGGHSEFFLGKYPGLHLIGLDRDTN 75

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSSMQIDCGDR 123
           A+    E +  + ++ +    T+  ++D +   G      V  ++FDLGVSSMQ+D  DR
Sbjct: 76  ALRIASERLAPFADRTTFVHTTYDGIEDALEQAGLPSTESVHAILFDLGVSSMQLDEADR 135

Query: 124 GFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GF++    PLDMRM  + G++A++V+N  +  DL RIL   GEE+ A +IA  I+++R+ 
Sbjct: 136 GFAYSIDAPLDMRMDQTVGLTAAEVLNTYSHGDLARILSTYGEERFAGKIASEILRQRER 195

Query: 183 APFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            PF T+  L  L+ +T+   ++    HPA R+FQALRI VN E++ L   + +   AL  
Sbjct: 196 EPFTTSAALVELLYRTIPAATRRTGGHPAKRTFQALRIEVNAELDSLRAAVPAGLDALAV 255

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRS------GKVMAVRHMIPSNAHPAVFQSITKKVVVP 295
           GG ++ +S+ SLEDR+VK     RS      G  + +  M P       F+ +T+     
Sbjct: 256 GGRVVFMSYQSLEDRVVKAELVPRSKSTSPEGLPVELPGMGPE------FRILTRGAERA 309

Query: 296 TQEDVAFNRRSRSAKLRAGMRTVER 320
           +++++  N RS   +LRA  R   R
Sbjct: 310 SEQEIEENPRSAPVRLRAAERISRR 334


>gi|308184491|ref|YP_003928624.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori SJM180]
 gi|308060411|gb|ADO02307.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori SJM180]
          Length = 308

 Score =  182 bits (463), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 118/302 (39%), Positives = 178/302 (58%), Gaps = 16/302 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVSCGQET 77
           H  VLL++V+    P    V++D T G GG+S++    K    +I +D+D FA    +E 
Sbjct: 8   HQSVLLQEVLQAFAPLEKGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFAQEIAKER 67

Query: 78  MRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +++++ +++L    F++  ++ +   G  + GV+ DLGVSS+Q+D  +RGF+F  S  LD
Sbjct: 68  LKEFEGRYNLLSGGFAKRFKEALEIHGERIKGVLVDLGVSSLQLDDDNRGFNFH-SHALD 126

Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM   S ++A  V+N   V  L +I    GE K+  +IAH I +R    PF+  +DLS 
Sbjct: 127 MRMDLESELNAQKVINSYPVVALEKIFRDYGEIKEYKKIAHKIAERCAKKPFKDAKDLSE 186

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
            +      SKN +IHPAT  FQA+RI VN+E+EEL + L+ A + LK G +L V+SFHSL
Sbjct: 187 FLSS---LSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCA-RNLK-GAILCVISFHSL 241

Query: 254 EDRLVKKFFASRSGKVM---AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           ED LVK  F   +   +   +      SN H A+   +TKK + P+ E++  NRRSRSAK
Sbjct: 242 EDALVKNAFKDYAKNCICDPSSFKCACSNNH-ALGAILTKKPITPSPEEIKNNRRSRSAK 300

Query: 311 LR 312
           +R
Sbjct: 301 MR 302


>gi|197302579|ref|ZP_03167634.1| hypothetical protein RUMLAC_01308 [Ruminococcus lactaris ATCC
           29176]
 gi|197298477|gb|EDY33022.1| hypothetical protein RUMLAC_01308 [Ruminococcus lactaris ATCC
           29176]
          Length = 326

 Score =  182 bits (463), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 106/304 (34%), Positives = 174/304 (57%), Gaps = 11/304 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQ 75
           +H+ VLL + +  LN  P  + +DAT G GG++   C ++GS   +I +D+D  A+    
Sbjct: 19  EHISVLLYETVDGLNVKPDGIYVDATLGGGGHAYEVCSRLGSQGRLIGIDQDADAIRAAG 78

Query: 76  ETMRDYKEQFSLFQATFS----QLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           + +  + E+ ++ ++ +     QLQ    DK VDG+  DLGVSS Q+D  +RGFS++   
Sbjct: 79  KRLECFGEKVTIVRSNYCDMKQQLQKLGIDK-VDGITVDLGVSSYQLDTAERGFSYRVDA 137

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM     ++A D++N  +  +L R++   GE++ A  IA  IV  R+ AP +TT  
Sbjct: 138 PLDMRMDQRQKMTARDIINDYSESELYRVIRDYGEDRFAKNIAKHIVAERKKAPIETTGQ 197

Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I   +    +    HP+ R+FQA+RI +N+E++ L   L    + L  GG L +++
Sbjct: 198 LNEIISHAIPMKVRKTSGHPSKRTFQAIRIELNHELDVLRDTLDDMIELLNPGGRLCIIT 257

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK  F           H  +    + +  + IT+K ++P++E++  N RS+S
Sbjct: 258 FHSLEDRIVKSSFRKNENPCTCPSHFPVCVCGNVSKGKVITRKPILPSEEELEVNSRSKS 317

Query: 309 AKLR 312
           AKLR
Sbjct: 318 AKLR 321


>gi|169824308|ref|YP_001691919.1| S-adenosyl-methyltransferase [Finegoldia magna ATCC 29328]
 gi|263447055|sp|B0S0Y9|RSMH_FINM2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|167831113|dbj|BAG08029.1| S-adenosyl-methyltransferase [Finegoldia magna ATCC 29328]
          Length = 312

 Score =  182 bits (463), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 106/308 (34%), Positives = 169/308 (54%), Gaps = 9/308 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           HVP+LL + I  LN   GK+ +D T G  G+SR   K   N  +I  D+D  A+   ++ 
Sbjct: 5   HVPILLNECIENLNIRDGKIYVDCTVGGAGHSREIAKRIGNGKLICFDQDEDALKVAKQR 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           + ++ ++    +  F  +++ + + G   VDG++ D+GVSS QID   RGFS+     LD
Sbjct: 65  LEEFGDKIIFIKDNFKNIKNDLHNLGIEKVDGILMDIGVSSYQIDEDSRGFSYMHDADLD 124

Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM  S  ISA D+VN  + +DL  ++    +EK A RIA  I   R++ P  TT +L  
Sbjct: 125 MRMDQSNPISAKDIVNTYSKEDLENVIFKYSDEKWAKRIAEFICNARETKPINTTFELVE 184

Query: 194 LIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           +I+K +      N + H A ++FQA+RI VN E++ L Q +  +   L   G + +++FH
Sbjct: 185 VIEKAIPKKVRMNQKGHSAKKTFQAIRIEVNKELDVLEQAVGDSIDLLNPEGRICIITFH 244

Query: 252 SLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLED++ K  F  R  G +      +    H    + IT+K + P++E++  N R+RSAK
Sbjct: 245 SLEDKICKDIFRQRQKGCICPPEIPVCVCNHKPEIKIITRKPIEPSKEELEQNSRARSAK 304

Query: 311 LRAGMRTV 318
           LR   + +
Sbjct: 305 LRVAEKII 312


>gi|291550007|emb|CBL26269.1| S-adenosyl-methyltransferase MraW [Ruminococcus torques L2-14]
          Length = 311

 Score =  182 bits (463), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 104/303 (34%), Positives = 171/303 (56%), Gaps = 9/303 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQ 75
           +HV VLL + +  LN  P  + +DAT G GG++   C K+G    +I +D+D  A+    
Sbjct: 4   EHVSVLLHETVDGLNVKPDGIYVDATLGGGGHAYEVCTKLGEQGRLIGIDQDADAIKAAG 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + +  + E+ ++ ++ +  ++  + + G   VDG+  DLGVSS Q+D  +RGFS++   P
Sbjct: 64  KRLEGFGEKVTIIRSNYCDMKPRLHEIGIDKVDGITVDLGVSSYQLDTAERGFSYRVDAP 123

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM     ++A D+VN  +  +L R++   GE++ A  IA  IV  R   P +TT  L
Sbjct: 124 LDMRMDQRQKMTARDIVNDYSESELYRVIRDYGEDRFAKNIAKHIVAERAKGPIETTGQL 183

Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           + +I   +    +    HP+ R+FQALRI +N+E++ L   L      L  GG L +++F
Sbjct: 184 NEIISHAIPMKIQKTSGHPSKRTFQALRIELNHELDVLRDTLDDMIDLLNPGGRLCIITF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  F       +   H  +    + +  + IT+K ++P++E++  N RS+SA
Sbjct: 244 HSLEDRIVKSSFRKNENPCICPSHFPVCVCGNVSKGKVITRKPILPSEEELTVNSRSKSA 303

Query: 310 KLR 312
           KLR
Sbjct: 304 KLR 306


>gi|107021630|ref|YP_619957.1| S-adenosyl-methyltransferase MraW [Burkholderia cenocepacia AU
           1054]
 gi|123245314|sp|Q1BZH1|RSMH_BURCA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|105891819|gb|ABF74984.1| methyltransferase [Burkholderia cenocepacia AU 1054]
          Length = 313

 Score =  182 bits (463), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 121/311 (38%), Positives = 185/311 (59%), Gaps = 21/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGS--NVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  V +D TFG GG+SR+   ++ S   +IA D+DP A+   Q 
Sbjct: 7   HRTVLLDEAVESLVTRPDGVCVDGTFGRGGHSRAVLARLASAGRLIAFDKDPRAIETAQ- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + D +  FS+   +F+ ++D +  +GV+   GV+ DLGVSS Q+D   RGFSF+  GPL
Sbjct: 66  GIEDAR--FSIVHDSFASMRDALAARGVEKVSGVLLDLGVSSPQVDDPARGFSFRADGPL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTT 188
           DMRM  + G SA++ + +A+V++LT ++   GEE+ A +IA A+V RR  +    P  TT
Sbjct: 124 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDTT 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ ++   V   +  +  PATR+FQA+RI VN E+ +L   L +A   L+ GG L+V+
Sbjct: 184 GELAQIVGHVVKTREKGK-DPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVI 242

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNRR 305
           SFHSLEDR+VK+F  + +    AV   +P  A      S   K++    P++ +VA N R
Sbjct: 243 SFHSLEDRIVKRFMQAHA-SAPAVDRRLPIRA--VDLPSPPLKIISRQFPSEAEVAANPR 299

Query: 306 SRSAKLRAGMR 316
           +RSA +R   R
Sbjct: 300 ARSAVMRIAER 310


>gi|316984918|gb|EFV63874.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis H44/76]
 gi|325199600|gb|ADY95055.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis H44/76]
          Length = 316

 Score =  182 bits (463), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 113/287 (39%), Positives = 165/287 (57%), Gaps = 10/287 (3%)

Query: 39  VILDATFGAGGYSR-SFCKMG--SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95
           V +D TFG GG+SR    ++G    +I  D+DP A++  +E  R  K +  +    F+  
Sbjct: 16  VYVDGTFGRGGHSRLILSRLGDAGRLIVFDKDPQAIAVAEELARSDK-RVGVVHGGFASF 74

Query: 96  QDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQA 151
           Q  +   G   VDG +FDLG+SS QID G RGFSF+   PLDMRM  + G+SA++ +  A
Sbjct: 75  QTALDGLGIGKVDGALFDLGISSPQIDDGSRGFSFRFDAPLDMRMDTTRGMSAAEWIAVA 134

Query: 152 NVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPAT 211
           + +DL  ++   GEE+ + RIA AIV +R  +P  TT+ L+ ++ + V   +  +  PAT
Sbjct: 135 SEQDLHEVIKNYGEERFSRRIARAIVAQRAESPIDTTRKLAQIVAQNVRTRERGQ-DPAT 193

Query: 212 RSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMA 271
           R+FQA+RIF+N E+EE+   L      LK GG L V++FHSLEDR+VK+F    S     
Sbjct: 194 RTFQAVRIFINRELEEVGAVLPQVMCRLKEGGRLAVIAFHSLEDRIVKQFVKKYSQHAPL 253

Query: 272 VRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
            R      A  P +   I  + + P + ++A N R+RSA LR   RT
Sbjct: 254 PRWAAVREADLPELPLKIVGRALKPGEAEIAANPRARSAVLRVAERT 300


>gi|241760229|ref|ZP_04758325.1| S-adenosyl-methyltransferase MraW [Neisseria flavescens SK114]
 gi|241319340|gb|EER55805.1| S-adenosyl-methyltransferase MraW [Neisseria flavescens SK114]
          Length = 320

 Score =  182 bits (463), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 114/306 (37%), Positives = 168/306 (54%), Gaps = 10/306 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76
           HV VLL + +  L      + +D TFG GG+SR   S       ++  D+DP A++   E
Sbjct: 9   HVTVLLHEAVDALAIRKDGIYVDGTFGRGGHSRLILSRLSEQGRLVVFDKDPEAIAVANE 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             +  K + S+    F   Q  + + G+D   G +FDLG+SS QID G RGFSF+   PL
Sbjct: 69  LAKQDK-RVSVVHNGFETFQTALDELGIDKIDGALFDLGISSPQIDDGSRGFSFRFDAPL 127

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  + G+SA++ +  A+ +DL  ++   GEE+ + +IA AIV +R+ +P  TT+ L+
Sbjct: 128 DMRMDPTRGMSAAEWIATASEQDLHEVIKNYGEERFSRQIARAIVAQREESPIDTTRKLA 187

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            L+ + V   +  +  PATR+FQA+RIF+N E+EE+   L      LK GG L V++FHS
Sbjct: 188 QLVAQNVRTRERGQ-DPATRTFQAVRIFINRELEEVEAVLPQVAGRLKEGGRLAVIAFHS 246

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK+F    S      R  +   A  P        K + P   +   N R+RSA L
Sbjct: 247 LEDRIVKQFIKKYSQHAPLPRWAVVKEADLPQPPLKAVGKAIKPGSTETEANPRARSAVL 306

Query: 312 RAGMRT 317
           R   R+
Sbjct: 307 RVAERS 312


>gi|108757260|ref|YP_633751.1| S-adenosyl-methyltransferase MraW [Myxococcus xanthus DK 1622]
 gi|122980788|sp|Q1D0S2|RSMH_MYXXD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|108461140|gb|ABF86325.1| S-adenosyl-methyltransferase MraW [Myxococcus xanthus DK 1622]
          Length = 304

 Score =  182 bits (463), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 118/303 (38%), Positives = 166/303 (54%), Gaps = 22/303 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H  VLL + + LL PA G+VI+D T G GG+S +    G+ V+ +DRDP A++     + 
Sbjct: 8   HQTVLLREAVDLLRPADGRVIIDGTLGGGGHSEALLASGATVVGVDRDPVALAAATARL- 66

Query: 80  DYKEQFSLFQATFSQL----QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
               +F      F++L     D +P   VDGV+ DLGVSS Q+D  +RGFSF K GPLDM
Sbjct: 67  GANPRFQGRAGNFAELPRVAADLLP---VDGVLVDLGVSSPQLDVAERGFSFSKDGPLDM 123

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RM   G +A++++   + ++L RIL   GEE  A  IA  + K   +   +  + +   +
Sbjct: 124 RMGPDGPTAAELIATTDERELVRILKDYGEEPFARPIARELKKALPTRTLEAAEVVKRAV 183

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
            +  +    NRIH ATR+FQALR+ VN E+E L   L +    LK GG   V++FHSLED
Sbjct: 184 PRKAW---PNRIHVATRTFQALRMAVNGELEALDALLAAIPGLLKVGGRAAVIAFHSLED 240

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAV------FQSITKKVVVPTQEDVAFNRRSRSA 309
           R VK+ F     + +A R   P      V      F  +TKK V  ++ +V  N RSRSA
Sbjct: 241 RKVKEAF-----RALAGRCTCPPGLPVCVCSGVGDFALVTKKAVAASEAEVEANPRSRSA 295

Query: 310 KLR 312
            LR
Sbjct: 296 HLR 298


>gi|288904625|ref|YP_003429846.1| S-adenosyl-dependent methyltransferase MraW [Streptococcus
           gallolyticus UCN34]
 gi|288731350|emb|CBI12901.1| S-adenosyl-dependent methyltransferase MraW [Streptococcus
           gallolyticus UCN34]
          Length = 316

 Score =  182 bits (463), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 114/309 (36%), Positives = 176/309 (56%), Gaps = 14/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMG--SNVIALDRDPFAVSCGQE 76
           H+ VLL + + +L+  P  V +DAT G  G+S     K+G   ++ A D+D  A+   Q 
Sbjct: 7   HITVLLHETVDMLDIKPDGVYVDATLGGAGHSEYLLSKLGPTGHLYAFDQDQTAIDNAQI 66

Query: 77  TMRDYKE--QFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            ++DY E  Q +  +  F  L   +   GV   DG+++DLGVSS Q+D  +RGFS++K  
Sbjct: 67  RLKDYIEKGQVTFIKDNFRNLASNLASHGVTEIDGILYDLGVSSPQLDERERGFSYKKDA 126

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+    +SA DVVN  +  DL RI    GE+K + +IA  I + R+  P +TT +
Sbjct: 127 PLDMRMNRDQDLSAYDVVNTYDYHDLVRIFFKYGEDKFSKQIARKIEQARKVKPIETTTE 186

Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L+ +I K+   +K    + HPA + FQA+RI VN+E+    + ++ A + L   G + V+
Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIELLAVDGRISVI 245

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F   S   V      IP +  P +   + +K ++P++E++  N RS 
Sbjct: 246 TFHSLEDRLTKQLFKEASTVDVPKGLPFIPEDMQPKL-ALVNRKPILPSEEELEVNNRSH 304

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 305 SAKLRVARK 313


>gi|85714965|ref|ZP_01045950.1| methyltransferase [Nitrobacter sp. Nb-311A]
 gi|85698162|gb|EAQ36034.1| methyltransferase [Nitrobacter sp. Nb-311A]
          Length = 419

 Score =  182 bits (462), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 127/288 (44%), Positives = 173/288 (60%), Gaps = 5/288 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQETM 78
           HVPVL  + +A+L    G V +DATFGAGGYSR+      + VI +DRDP A++ G   +
Sbjct: 95  HVPVLGGEAVAMLALRAGGVYVDATFGAGGYSRAILATADTRVIGIDRDPAAIAGGSALV 154

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV---SSMQIDCGDRGFSFQKSGPLDM 135
            +   + +L +  FS L      + V  V   +     SSMQ+D  DRGFSF+  GPLDM
Sbjct: 155 EESGGRLTLVEDRFSNLASVCAAQDVAVVDGVVMDVGVSSMQLDEADRGFSFRLDGPLDM 214

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RMS  G +A+DVV  A+  DL  I+ I GEE+++  +A AIV  R+  P  TT+ L+ ++
Sbjct: 215 RMSGHGPTAADVVAHASETDLADIIYIFGEERRSRAVARAIVAARRHGPIATTRALADVV 274

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
            K V  +K + IHPATR+FQALRIFVN E++EL   L +AE+ LK GG L VVSFHSLED
Sbjct: 275 SKVVR-AKPHEIHPATRTFQALRIFVNEELDELVAALAAAERVLKPGGRLAVVSFHSLED 333

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
           R+VK F A R  +    RH          F  +TK+ + P +E++  N
Sbjct: 334 RIVKNFLARRGKRGGGSRHRPEIEQGSPSFAILTKRPLTPGEEEMHAN 381


>gi|295425110|ref|ZP_06817815.1| S-adenosyl-methyltransferase MraW [Lactobacillus amylolyticus DSM
           11664]
 gi|295065169|gb|EFG56072.1| S-adenosyl-methyltransferase MraW [Lactobacillus amylolyticus DSM
           11664]
          Length = 315

 Score =  182 bits (462), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 116/312 (37%), Positives = 178/312 (57%), Gaps = 17/312 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGS-NVIALDRDPFAVSCGQET 77
           H  VLL + I  L P  G + +DATFG GG+++    K+ +  +I  D+D +A+   +  
Sbjct: 5   HTSVLLHETIDNLKPKDGGLYVDATFGGGGHAKYLLSKLNTGTLIGFDQDEYAIKAAKLN 64

Query: 78  MRDYKEQ-----FSLFQATFSQL-QDYV----PDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
             D  ++       L    FS L QD V    PD G+DG+ +DLGVSS Q D  +RGFS+
Sbjct: 65  FTDLLQEDSNPRLQLVHDNFSHLEQDLVKLGYPD-GIDGIYYDLGVSSPQFDQAERGFSY 123

Query: 128 QKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           + +  LDMRM  S  + A  +VNQ++ +DL  IL   G+EK + +IAH IV++R+  P +
Sbjct: 124 RYNARLDMRMDQSKELDAYQLVNQSSQRDLANILYKYGDEKFSRQIAHRIVEKRREKPIE 183

Query: 187 TTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           TT +L  +I++ +  +++    HPA +SFQALR+ VN+E+E L   L  A K L+  G +
Sbjct: 184 TTFELVDIIKEAIPAYARRTGGHPAKKSFQALRVAVNHELEVLQTSLEEAVKLLRPKGRI 243

Query: 246 IVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
            V++F S ED++VKK F   S  +V     MIP    P + + + +K +  +  ++  N 
Sbjct: 244 SVITFQSDEDKIVKKIFKKYSEVEVPRGMPMIPDGMKPTL-RLVNRKPITASALELENNN 302

Query: 305 RSRSAKLRAGMR 316
           RS SAKLR   +
Sbjct: 303 RSHSAKLRVAEK 314


>gi|91785301|ref|YP_560507.1| S-adenosyl-methyltransferase MraW [Burkholderia xenovorans LB400]
 gi|122970134|sp|Q13TY4|RSMH_BURXL RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|91689255|gb|ABE32455.1| S-adenosyl-methyltransferase, cell division cytoplasmic protein,
           MraW [Burkholderia xenovorans LB400]
          Length = 317

 Score =  182 bits (462), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 124/311 (39%), Positives = 184/311 (59%), Gaps = 21/311 (6%)

Query: 20  HVPVLLEKVI-ALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQ 75
           H  VLLE+ + AL+  A G V +D TFG GG+SR    K+G +  +IA D+DP A++  Q
Sbjct: 11  HRTVLLEEAVQALVTRADG-VYVDGTFGRGGHSRLVLEKLGESGRLIAFDKDPLAIATAQ 69

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           +       +F +   +F+ L+  + ++GV    GV+ DLGVSS Q+D  +RGFSF+  GP
Sbjct: 70  QIT---DPRFGIVHESFASLRTAMAERGVGRVSGVLLDLGVSSPQVDDPERGFSFRADGP 126

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQT 187
           LDMRM  + G SA+D + +A V++LT ++   GEE+ A +IA A+V RR  +    P  +
Sbjct: 127 LDMRMDPTRGESAADWLARATVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLVS 186

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T +L+ ++   V   +  +  PATR+FQA+RI +N E+ EL   L +A   L+ GG L+V
Sbjct: 187 TGELAQIVANVVKTREKGK-DPATRTFQAIRIHINQELAELQVVLEAALSLLEQGGRLVV 245

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA--HPAVFQSITKKVVVPTQEDVAFNRR 305
           +SFHSLEDR+VK+F  + +    AV   +P  A   P+    I  +V     E VA N R
Sbjct: 246 ISFHSLEDRIVKRFMQAHA-STPAVDRRLPIRAVDLPSPPLKIIGRVFASDAE-VAANPR 303

Query: 306 SRSAKLRAGMR 316
           +RSA +R   R
Sbjct: 304 ARSAVMRVAER 314


>gi|323706128|ref|ZP_08117697.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323534572|gb|EGB24354.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 310

 Score =  182 bits (462), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 106/304 (34%), Positives = 164/304 (53%), Gaps = 8/304 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77
           H  VLL++ I  L   P  + +D T G GG+S    +      +IA+DRD  A+      
Sbjct: 5   HESVLLQETIEYLEIKPDGIYVDGTLGGGGHSYEILRRLDKGKLIAIDRDMDAIKAASIR 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++D+    +     +  ++D +   G+   DG + DLGVSS Q+D   RGFS+    PLD
Sbjct: 65  LKDFNNT-TYIHDNYKNIKDILKKCGIESIDGALLDLGVSSYQLDEAQRGFSYMHDAPLD 123

Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM   S I+A  VVN  +  ++ +++   GEE  A RIA  IV+ R+  P +TT +L  
Sbjct: 124 MRMDKESDITAEYVVNNYSEDEIAKVISDYGEELWAKRIAKFIVEERRRKPIKTTFELVD 183

Query: 194 LIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +I+K +  SK     HPA R+FQA+RI VN E++ L   +      +  GG + +++FHS
Sbjct: 184 IIKKAIPASKRRTGPHPAKRTFQAIRIEVNEELKGLGDAIADFVDVMNPGGRIAIITFHS 243

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK  +          +++  +     V + ITKK +VP++ ++  N RSRSAKLR
Sbjct: 244 LEDRIVKNAYKKLEDPCTCPKNLPCTCGKKPVIKIITKKPIVPSEVEIKVNPRSRSAKLR 303

Query: 313 AGMR 316
              +
Sbjct: 304 VAEK 307


>gi|168702508|ref|ZP_02734785.1| methyltransferase [Gemmata obscuriglobus UQM 2246]
          Length = 293

 Score =  182 bits (462), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 117/304 (38%), Positives = 166/304 (54%), Gaps = 28/304 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HV VL  + +ALL+P P +  +D T G  G++R   +       V+ALD+DP  ++  + 
Sbjct: 9   HVSVLPAETLALLDPRPDETWVDCTTGGAGHTRLIAERVGPAGRVLALDQDPTMLALARP 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +        L  A F QL + +  +G   VDGV+ DLG SS Q+    RG SF+  GPL
Sbjct: 69  LVAGLP--VELVHANFDQLAEVLAARGIAAVDGVLADLGFSSDQLAERARGLSFRDDGPL 126

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMR+   SG +A+D+VN  +   L  +    GEE+ + R+A  IV RR   PF TT DL+
Sbjct: 127 DMRLDPTSGSTAADMVNSLSEGALADVFWEYGEERHSRRVAKKIVARRAERPFATTADLA 186

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           S+++  V   ++  I PATR FQALRI VN+E+  L + L      +K+GG + ++SFHS
Sbjct: 187 SVVRSCV--PRSGSIDPATRVFQALRIAVNDELGSLDRLLAVLPTVVKSGGRVGIISFHS 244

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR VK    +                   V++ +TKK V    E+VA N R+RSAKLR
Sbjct: 245 LEDRRVKHVLRTE-----------------GVWRPLTKKPVEAGDEEVARNPRARSAKLR 287

Query: 313 AGMR 316
           A  R
Sbjct: 288 AATR 291


>gi|296269378|ref|YP_003652010.1| S-adenosyl-methyltransferase MraW [Thermobispora bispora DSM 43833]
 gi|296092165|gb|ADG88117.1| S-adenosyl-methyltransferase MraW [Thermobispora bispora DSM 43833]
          Length = 327

 Score =  182 bits (462), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 118/297 (39%), Positives = 176/297 (59%), Gaps = 10/297 (3%)

Query: 17  IGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAV 71
           +  HVPV+L +V+ LL PA   P  V++DA  G GG++ +  K     ++I +DRDP A+
Sbjct: 14  VNGHVPVMLGRVLELLAPALTGPDPVLVDANVGLGGHAEALLKAHPALHLIGIDRDPTAI 73

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQ 128
                 +  Y E+ +L  A   +L   +   G   ++G +FDLG+SS QID   RGF++ 
Sbjct: 74  ERSTARLAPYAERVTLVHAVSDELPTILSRAGRPRINGALFDLGLSSPQIDEAARGFAYS 133

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
              PLDMRM     ++A+DVVN  +V +LTRIL   GEE+ A+RIA+AI + R  +P  T
Sbjct: 134 YDAPLDMRMDPGQELTAADVVNGYSVAELTRILREYGEERFAARIANAIARERARSPITT 193

Query: 188 TQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T+ L+ L++  +   ++    +PA R+FQALRI VN E+  L + L +A  AL  GG ++
Sbjct: 194 TKRLADLVRDAIPAATRRTGGNPAKRTFQALRIEVNQELAALERALPAALDALAVGGRVV 253

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
           V+++HSLEDRLVK+  A RS +       +P  AH   F+ +TK   +P  E+VA N
Sbjct: 254 VLAYHSLEDRLVKRVLAERSTESGPPGLPVPLEAHLPTFRLLTKGAELPDDEEVARN 310


>gi|5834377|gb|AAD53943.1|AF179611_27 conserved hypothetical protein [Zymomonas mobilis subsp. mobilis
           ZM4]
          Length = 276

 Score =  182 bits (462), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 114/272 (41%), Positives = 162/272 (59%), Gaps = 8/272 (2%)

Query: 67  DPFAVSCGQETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDR 123
           DP A+  G   +  YK +  L    FS +    D +  K VDG+VFD+GVSSMQID  +R
Sbjct: 1   DPDAIREGASLVEKYKGRLRLVNDCFSNIGHHLDALDIKTVDGMVFDIGVSSMQIDRPER 60

Query: 124 GFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           GFS Q  GPLDMRM+ +G+SA +++N A  KD+  +L + GEE+Q+ R+A AIV  R +A
Sbjct: 61  GFSIQADGPLDMRMAQAGLSAEELLNNAQEKDIADVLYLYGEERQSRRVATAIV--RGTA 118

Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
             +    L+ +I++++ +   ++  PA   FQA+RI +N E++EL  GL++AE+ LK  G
Sbjct: 119 FKRRLFRLAKVIRQSLGYRPFDKKDPAAHCFQAIRIHLNRELDELKDGLQTAERFLKTKG 178

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
            L VV+FHSLEDR+VK F    +G+   V RH         VF S   + V   + ++A 
Sbjct: 179 CLAVVTFHSLEDRIVKHFMREHAGQTGQVSRHQPVIPQQNPVFFSKPARPVRAGETELAR 238

Query: 303 NRRSRSAKLRAGMRTVERSIEDDSF--VHLPR 332
           N R+RSA LRA  RT     ED S    H+PR
Sbjct: 239 NPRARSATLRAVYRTETPFSEDISRPDTHIPR 270


>gi|304386665|ref|ZP_07368947.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis ATCC
           13091]
 gi|304339250|gb|EFM05328.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis ATCC
           13091]
          Length = 328

 Score =  182 bits (462), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 116/306 (37%), Positives = 171/306 (55%), Gaps = 10/306 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMG--SNVIALDRDPFAVSCGQE 76
           H+ VLL + +  L      V +D TFG GG+SR    ++G    +I  D+DP A++  +E
Sbjct: 9   HITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFDKDPQAIAVAEE 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             R  K +  +    F+  Q  +   G   VDG +FDLG+SS QID G RGFSF+   PL
Sbjct: 69  LARSDK-RVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGSRGFSFRFDAPL 127

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  + G+SA++ +  A+ +DL  ++   GEE+ + +IA AIV +R  +P  TT+ L+
Sbjct: 128 DMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRAESPIDTTRKLA 187

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            ++ + V   +  +   ATR+FQA+RIF+N E+EE+   L      LK GG L V++FHS
Sbjct: 188 QIVAQNVRTRERGQ-DSATRTFQAIRIFINRELEEVGAVLPQVMCRLKEGGRLAVIAFHS 246

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK+F    S      R      A  P     I  + + P + ++A N R+RSA L
Sbjct: 247 LEDRIVKQFVKKYSQHAPLPRWAAVREADLPEPPLKIVGRALKPGEAEIAANPRARSAVL 306

Query: 312 RAGMRT 317
           R   RT
Sbjct: 307 RVAERT 312


>gi|221213285|ref|ZP_03586260.1| S-adenosyl-methyltransferase MraW [Burkholderia multivorans CGD1]
 gi|221166737|gb|EED99208.1| S-adenosyl-methyltransferase MraW [Burkholderia multivorans CGD1]
          Length = 313

 Score =  182 bits (462), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 118/312 (37%), Positives = 186/312 (59%), Gaps = 21/312 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMG--SNVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  + +D TFG GG+SR+   ++G    +IA D+DP A+   Q 
Sbjct: 7   HRTVLLDEAVESLVTRPDGIYVDGTFGRGGHSRAVLARLGPAGRLIAFDKDPRAIETAQ- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           +M D +  FS+   +F+ ++D +  +G++   GV+ DLGVSS Q+D   RGFSF+  GPL
Sbjct: 66  SMADAR--FSIVHDSFASMRDALAARGIEKVSGVLLDLGVSSPQVDDPARGFSFRADGPL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTT 188
           DMRM  + G SA++ + +A++++LT ++   GEE+ A +IA A+V RR  +    P  +T
Sbjct: 124 DMRMDPTRGESAAEWLARASLQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDST 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ ++   V   +  +  PATR+FQA+RI VN E+ +L   L +A   L+ GG L+V+
Sbjct: 184 GELAQIVGHVVKTREKGK-DPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVI 242

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNRR 305
           SFHSLEDR+VK+F  + +    AV   +P  A      S   K++    P++ +VA N R
Sbjct: 243 SFHSLEDRIVKRFMQAHA-SAPAVDRRLPIRA--VDLPSPPLKIIGRQFPSEAEVAANPR 299

Query: 306 SRSAKLRAGMRT 317
           +RSA +R   R 
Sbjct: 300 ARSAVMRIAERV 311


>gi|296160551|ref|ZP_06843367.1| S-adenosyl-methyltransferase MraW [Burkholderia sp. Ch1-1]
 gi|295889300|gb|EFG69102.1| S-adenosyl-methyltransferase MraW [Burkholderia sp. Ch1-1]
          Length = 313

 Score =  182 bits (462), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 124/311 (39%), Positives = 184/311 (59%), Gaps = 21/311 (6%)

Query: 20  HVPVLLEKVI-ALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQ 75
           H  VLLE+ + AL+  A G V +D TFG GG+SR    K+G +  +IA D+DP A++  Q
Sbjct: 7   HRTVLLEEAVQALVTRADG-VYVDGTFGRGGHSRLVLEKLGESGRLIAFDKDPLAIATAQ 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           +       +F +   +F+ L+  + ++GV    GV+ DLGVSS Q+D  +RGFSF+  GP
Sbjct: 66  QIT---DPRFGIVHESFASLRTAMAERGVGRVSGVLLDLGVSSPQVDDPERGFSFRADGP 122

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQT 187
           LDMRM  + G SA+D + +A V++LT ++   GEE+ A +IA A+V RR  +    P  +
Sbjct: 123 LDMRMDPTRGESAADWLARATVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLVS 182

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T +L+ ++   V   +  +  PATR+FQA+RI +N E+ EL   L +A   L+ GG L+V
Sbjct: 183 TGELAQIVANVVKTREKGK-DPATRTFQAIRIHINQELAELQVVLEAALSLLEQGGRLVV 241

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA--HPAVFQSITKKVVVPTQEDVAFNRR 305
           +SFHSLEDR+VK+F  + +    AV   +P  A   P+    I  +V     E VA N R
Sbjct: 242 ISFHSLEDRIVKRFMQAHA-STPAVDRRLPIRAVDLPSPPLKIIGRVFASDAE-VAANPR 299

Query: 306 SRSAKLRAGMR 316
           +RSA +R   R
Sbjct: 300 ARSAVMRVAER 310


>gi|83748758|ref|ZP_00945773.1| S-adenosyl-methyltransferase mraW [Ralstonia solanacearum UW551]
 gi|207721512|ref|YP_002251952.1| s-adenosyl-methyltransferase mraw protein [Ralstonia solanacearum
           MolK2]
 gi|207744409|ref|YP_002260801.1| s-adenosyl-methyltransferase mraw protein [Ralstonia solanacearum
           IPO1609]
 gi|83724579|gb|EAP71742.1| S-adenosyl-methyltransferase mraW [Ralstonia solanacearum UW551]
 gi|206586672|emb|CAQ17258.1| s-adenosyl-methyltransferase mraw protein [Ralstonia solanacearum
           MolK2]
 gi|206595814|emb|CAQ62741.1| s-adenosyl-methyltransferase mraw protein [Ralstonia solanacearum
           IPO1609]
          Length = 319

 Score =  182 bits (462), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 120/313 (38%), Positives = 181/313 (57%), Gaps = 21/313 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VL ++ +  L      + +D TFG GG+SR   +    G  +IA D+DP A++    
Sbjct: 11  HQTVLRDEAVDALLWRDDGIYIDGTFGRGGHSRLILERLGPGGRLIAFDKDPAAITEAG- 69

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           T+ D +  F++   +F+ L   +  +G   V GV+ DLG+SS QID G RGFSF+  GPL
Sbjct: 70  TVEDAR--FAIEHDSFAHLDAALDARGIGRVAGVLLDLGISSPQIDEGARGFSFRMDGPL 127

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTT 188
           DMRM  + GI+A+  + +A+ +D+ R++   GEE+ A +IA AIV RR  +    P   T
Sbjct: 128 DMRMDTTRGITAAQWLAEADERDIARVIRDYGEERFAVQIAKAIVARRSESGTRGPLDRT 187

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L++L+ + V   +  +  PATR+FQALRI VN E+ +L  GL++A + L+ GG L+V+
Sbjct: 188 SELAALVAQAVKTREKGQ-DPATRTFQALRIHVNQELADLETGLKAAFERLEQGGRLVVI 246

Query: 249 SFHSLEDRLVKKF---FASRSGKVMAVRHMIPSNAH--PAVFQSITKKVVVPTQEDVAFN 303
           SFHSLEDR+VK+F    A             P  AH  PA    +  + V P++ +V+ N
Sbjct: 247 SFHSLEDRIVKRFMQALARPEQSAAPEMRRAPLRAHELPAPQLRLLGR-VRPSEAEVSAN 305

Query: 304 RRSRSAKLRAGMR 316
            R+RSA +R   R
Sbjct: 306 PRARSAIMRVAER 318


>gi|88799431|ref|ZP_01115008.1| S-adenosyl-methyltransferase [Reinekea sp. MED297]
 gi|88777741|gb|EAR08939.1| S-adenosyl-methyltransferase [Reinekea sp. MED297]
          Length = 315

 Score =  182 bits (462), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 121/308 (39%), Positives = 175/308 (56%), Gaps = 25/308 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76
           H  VLL + +  ++   G V +D TFG GG+SR   S     + +I  D+DP A++   E
Sbjct: 11  HETVLLHETVEAVDVGSG-VYVDGTFGRGGHSRLLLSRLDADARLIVFDKDPLAIATANE 69

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              +   + ++ Q  F++L   +   G    V G++ DLGVSS Q+D  +RGFSF+  GP
Sbjct: 70  LAAE-DSRVTVVQRGFAELSSVLKQAGLMGQVSGILLDLGVSSPQLDDAERGFSFRADGP 128

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+  SG SA+  + + + K+L  +L   G+E+ + RIA AIV  RQ  P + T  L
Sbjct: 129 LDMRMNPESGESAAQWIARVSEKELADVLFQYGDERFSRRIARAIVTARQKQPIERTLQL 188

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + +I KT +   +++ HPAT+SFQA+RI VN E++EL   L ++  ALK GG L V+SFH
Sbjct: 189 AEII-KTAHPKWDHKKHPATKSFQAIRIAVNGELDELDAVLSASVGALKPGGRLAVISFH 247

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP-------SNAHPAVFQSITKKVVVPTQEDVAFNR 304
           SLEDR VK+F      K+ A    +P        + H  V      K +  + E+VA N 
Sbjct: 248 SLEDRAVKQFI-----KLQAKGPELPPGLPVRDEDIH--VTMKAVGKAIKASAEEVAVNV 300

Query: 305 RSRSAKLR 312
           RSRSA LR
Sbjct: 301 RSRSAVLR 308


>gi|284929250|ref|YP_003421772.1| S-adenosyl-methyltransferase MraW [cyanobacterium UCYN-A]
 gi|284809694|gb|ADB95391.1| S-adenosyl-methyltransferase MraW [cyanobacterium UCYN-A]
          Length = 298

 Score =  182 bits (462), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 125/304 (41%), Positives = 168/304 (55%), Gaps = 31/304 (10%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           H+PVL +++I  L   PG + LDAT G GG+S        NV  I +D D  A+   +  
Sbjct: 16  HIPVLSQELIEGLAIKPGGIYLDATLGRGGHSNLILSTFPNVQVIGIDLDDDAILNTKTN 75

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDK--GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           M    +Q   FQ      +DY P K    DG++ DLGVSS Q+D  +RGFSF+    LDM
Sbjct: 76  MSSSMKQ--RFQTWAGNFKDY-PGKIEEFDGIIADLGVSSPQLDNPERGFSFRHEASLDM 132

Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM+    ++A +++N  +   L  I    GEEK++  IA  +V+ R   PF TT DL+S 
Sbjct: 133 RMNREQSLTAEEIINHWSEITLANIFYQYGEEKRSRSIARYLVENR---PFFTTTDLASA 189

Query: 195 IQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           I K V+  K    RIHPATR FQALRI VN+E+  L + L+ +   LK  G + ++SFHS
Sbjct: 190 ISK-VFPPKYRYGRIHPATRVFQALRIIVNDELTSLEKFLQQSPSWLKPQGNIGIISFHS 248

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK  F  R   ++ V               ITKK ++P QE+   NRRSRSAKLR
Sbjct: 249 LEDRIVKHTF--RDSSLLDV---------------ITKKPIIPKQEEKYNNRRSRSAKLR 291

Query: 313 AGMR 316
              R
Sbjct: 292 FAKR 295


>gi|329667562|gb|AEB93510.1| S-adenosyl-methyltransferase MraW [Lactobacillus johnsonii DPC
           6026]
          Length = 322

 Score =  182 bits (462), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 113/307 (36%), Positives = 177/307 (57%), Gaps = 15/307 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77
           H  VLL + I  LNP  G + +DATFG GG++R          VI  D+D +A+S  +E+
Sbjct: 12  HKSVLLHETIDNLNPKDGGLYVDATFGGGGHARYLLSKLNKGTVIGFDQDEYAISMAKES 71

Query: 78  MRDY-----KEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
                    + +  L    F  L++ + +     G+DG+ +DLGVSS Q D  +RGFS++
Sbjct: 72  FAKELQVGAEPRLMLVHDNFCHLKENLVELGISDGIDGIYYDLGVSSPQFDQPERGFSYR 131

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
               LDMRM  S  + A  +VN  + K+L+ +L   G+EK + +IA  IV RR+  P  T
Sbjct: 132 FDARLDMRMDQSQELDAYTIVNTWSQKELSDVLYKYGDEKFSRQIARKIVDRRKEKPIVT 191

Query: 188 TQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T DL  +I+  +  +++ +  HPA +SFQA+R+ VNNE+  L + L  A K LK GG + 
Sbjct: 192 TFDLVDVIKDAIPAYARRSGGHPAKKSFQAIRVAVNNELGVLQESLEEAIKLLKPGGRIS 251

Query: 247 VVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           V++F S ED++VKK F   S  K+     M+P+++ P + + I++K ++ + +++  N R
Sbjct: 252 VITFQSHEDKIVKKIFKKYSEVKIPRGMPMVPADSKPTL-RLISRKPIMASSDELEENNR 310

Query: 306 SRSAKLR 312
           S SAKLR
Sbjct: 311 SHSAKLR 317


>gi|225619046|ref|YP_002720272.1| S-adenosyl-methyltransferase MraW [Brachyspira hyodysenteriae WA1]
 gi|263445852|sp|C0QWF7|RSMH_BRAHW RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|225213865|gb|ACN82599.1| S-adenosyl-methyltransferase MraW [Brachyspira hyodysenteriae WA1]
          Length = 300

 Score =  182 bits (462), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 98/302 (32%), Positives = 173/302 (57%), Gaps = 16/302 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H PV+L++V++ + P   K+ +DAT G GG++++   +   V + +RD   +   ++ ++
Sbjct: 11  HTPVMLKEVLSFI-PENAKIAVDATLGEGGHTKAMLDLNLEVHSFERDSAILEIAKKRLK 69

Query: 80  DYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
           +Y ++F  +  T+ ++ + + D     VD +++DLGVS       +RGFSF+ +  LDMR
Sbjct: 70  NY-DKFHYYNNTYDKMIEELDDSIIGNVDFMLYDLGVSLFHFKKAERGFSFKDNVRLDMR 128

Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI- 195
           +  +  SA DV+N  + ++L R+L   GE   A ++A+ IVK R     +T+++L ++I 
Sbjct: 129 LGLNEKSAYDVINGYSEEELERVLRDYGEISNARKMANVIVKERNRRKIETSRELENIIF 188

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
             T    +  +IHPAT  FQA+RI VN+E+  L + + +    LK  G+++V+S+HSLED
Sbjct: 189 HNTDKSQRYGKIHPATLVFQAIRIEVNDELNILEKSISNIPSILKQNGVVVVMSYHSLED 248

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           R++KKFF               +     +F+ +  KV +PT E++  N  SRSAK+R   
Sbjct: 249 RIIKKFFKENE----------KTKNKDGIFKLLNNKVKLPTNEEIKSNPASRSAKMRIAQ 298

Query: 316 RT 317
           + 
Sbjct: 299 KV 300


>gi|198282533|ref|YP_002218854.1| S-adenosyl-methyltransferase MraW [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218665162|ref|YP_002424723.1| S-adenosyl-methyltransferase MraW [Acidithiobacillus ferrooxidans
           ATCC 23270]
 gi|263433385|sp|B5ELD1|RSMH_ACIF5 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263433699|sp|B7J3W0|RSMH_ACIF2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|198247054|gb|ACH82647.1| S-adenosyl-methyltransferase MraW [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218517375|gb|ACK77961.1| S-adenosyl-methyltransferase MraW [Acidithiobacillus ferrooxidans
           ATCC 23270]
          Length = 321

 Score =  182 bits (462), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 125/309 (40%), Positives = 172/309 (55%), Gaps = 14/309 (4%)

Query: 20  HVPVLLEKVIALLNPA--PGKVI--LDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
           HV VLL + I  L PA   G  +  +DAT G GG+S +          ++ LDRDP A++
Sbjct: 11  HVAVLLAETIVALRPALHTGAAVRCVDATGGRGGHSAALLAELGAADTLLILDRDPSAIA 70

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
             +         + + QA FSQL + +     + VD ++ DLGVSS Q+D   RGFSF +
Sbjct: 71  ALRARFAQDSRVY-IRQARFSQLAEVLAALEWERVDAILADLGVSSPQLDEAARGFSFLR 129

Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM      SA++ +  A   D+TR+L   GEE+ A  IA AI++ R+ AP   T
Sbjct: 130 DGPLDMRMDPGADRSAAEWLATATEADMTRVLREYGEERFARPIARAILRAREQAPITRT 189

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ LI + +   +  + HPATRSFQ +RIF+N E+EEL   L  A  AL+AGG L V+
Sbjct: 190 LQLAELIAQVLPRHETGQ-HPATRSFQGIRIFINRELEELEAFLPQAMNALRAGGRLAVI 248

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDRLVK+FF +   ++ A   +  S   P  +    K +    +E    N RSRS
Sbjct: 249 SFHSLEDRLVKRFFRADDYRISADVPLRASELPPLPWHPAGKALRAGPRE-TRDNPRSRS 307

Query: 309 AKLRAGMRT 317
           A LR   R+
Sbjct: 308 AVLRVAERS 316


>gi|322387149|ref|ZP_08060759.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus infantis ATCC 700779]
 gi|321141678|gb|EFX37173.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus infantis ATCC 700779]
          Length = 316

 Score =  182 bits (462), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 112/309 (36%), Positives = 179/309 (57%), Gaps = 14/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           HV V+L + I +L+  P  + +DAT G  G+S       S   ++ A D+D  A+   Q+
Sbjct: 7   HVTVMLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66

Query: 77  TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y E+   +  +  F  L+D + D GV   DG+ +DLGVSS Q+D  +RGFS++K+ 
Sbjct: 67  RLAPYIEKGMVTFIKDNFRHLKDRLHDLGVTEIDGICYDLGVSSPQLDQRERGFSYKKNA 126

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+  + ++A +VVN  +  DL RI    GE+K + +IA  I + R+  P +TT +
Sbjct: 127 PLDMRMNQEASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQAREQKPIETTTE 186

Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L+ +I K+   +K    + HPA + FQA+RI VN+E+    + ++ A   L   G + V+
Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVI 245

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F   S  KV      IP +  P + + +++K ++P++E++  N RS 
Sbjct: 246 TFHSLEDRLTKQLFKEVSTVKVPKGLPFIPDDLKPKM-ELVSRKPILPSKEELEANNRSH 304

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 305 SAKLRVARK 313


>gi|317121700|ref|YP_004101703.1| S-adenosyl-methyltransferase MraW [Thermaerobacter marianensis DSM
           12885]
 gi|315591680|gb|ADU50976.1| S-adenosyl-methyltransferase MraW [Thermaerobacter marianensis DSM
           12885]
          Length = 342

 Score =  182 bits (461), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 123/302 (40%), Positives = 175/302 (57%), Gaps = 18/302 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           HVPVLL +V+A L P PG   +D T GAGG++ +          ++ +DRDP A++    
Sbjct: 46  HVPVLLREVVAYLAPRPGGRYVDGTVGAGGHAAAVLAAAGGEAELLGIDRDPAALALAAR 105

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  +  +  L    F  L+ ++ D G   VDG++ DLGVSSMQ+D   RGFS+Q+ GPL
Sbjct: 106 RLAPFGARVRLVHGNFRGLEQHLEDAGWDAVDGILLDLGVSSMQLDDPSRGFSYQEEGPL 165

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  S  ++A+D+VN A    L R +   GEE+ A RIA  IV  R+  P  TT  L 
Sbjct: 166 DMRMDPSQPVTAADLVNTAGRDQLARWIAEYGEERWAGRIADFIVAARRRRPITTTTQLV 225

Query: 193 SLIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  +      R  HPA R+FQALRI VN E++ L + L+ A + L+ GG ++V++FH
Sbjct: 226 EIIKAAIPARARRRGGHPARRTFQALRIAVNGELDGLEEFLQQAARRLRPGGRMVVIAFH 285

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR VK+ F          R +   +   A F+ +T++ V P +E+   N RSRSAKL
Sbjct: 286 SLEDRAVKRAF----------RALAAPDGGAAPFRLLTRRPVTPGEEEAQANPRSRSAKL 335

Query: 312 RA 313
           RA
Sbjct: 336 RA 337


>gi|306830621|ref|ZP_07463786.1| S-adenosyl-methyltransferase MraW [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
 gi|304427129|gb|EFM30236.1| S-adenosyl-methyltransferase MraW [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
          Length = 324

 Score =  182 bits (461), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 116/323 (35%), Positives = 182/323 (56%), Gaps = 19/323 (5%)

Query: 6   CKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGS--NVI 62
            K M++  HH     + VLL + + +L+  P  V +DAT G  G+S     K+G+  ++ 
Sbjct: 6   MKGMTTDFHH-----ITVLLHETVDMLDIKPDGVYVDATLGGAGHSEYLLSKLGTTGHLY 60

Query: 63  ALDRDPFAVSCGQETMRDYKE--QFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQ 117
           A D+D  A+   Q  ++DY E  Q +  +  F  L   +   GV   DG+++DLGVSS Q
Sbjct: 61  AFDQDQTAIDNAQIRLKDYIEKGQVTFIKDNFRNLASNLASHGVTEIDGILYDLGVSSPQ 120

Query: 118 IDCGDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
           +D  +RGFS++K  PLDMRM+    +SA +VVN  +  DL RI    GE+K + +IA  I
Sbjct: 121 LDERERGFSYKKDAPLDMRMNRDQDLSAYNVVNTYDYHDLVRIFFKYGEDKFSKQIARKI 180

Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRS 234
            + R+  P +TT +L+ +I K+   +K    + HPA + FQA+RI VN+E+    + ++ 
Sbjct: 181 EQARKVKPIETTTELAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQ 239

Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVV 293
           A + L   G + V++FHSLEDRL K+ F   S   V      IP +  P +   + +K +
Sbjct: 240 AIELLAVDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPEDMQPKL-ALVNRKPI 298

Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316
           +P++E++  N RS SAKLR   +
Sbjct: 299 LPSEEELEVNNRSHSAKLRVARK 321


>gi|319639028|ref|ZP_07993786.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Neisseria
           mucosa C102]
 gi|317399932|gb|EFV80595.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Neisseria
           mucosa C102]
          Length = 320

 Score =  182 bits (461), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 114/306 (37%), Positives = 169/306 (55%), Gaps = 10/306 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQE 76
           HV VLL + +  L      + +D TFG GG+SR    ++G    ++  D+DP A++   E
Sbjct: 9   HVTVLLHEAVDALAIREDGIYVDGTFGRGGHSRLILSRLGEQGRLVVFDKDPEAIAVANE 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                K + S+    F   Q  + + G+D   G +FDLG+SS QID G RGFSF+   PL
Sbjct: 69  LAAQDK-RVSVVHNGFETFQTALDELGIDKIDGALFDLGISSPQIDDGSRGFSFRFDAPL 127

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  + G+SA++ +  A+ +DL  ++   GEE+ + +IA AIV +R+ +P  TT+ L+
Sbjct: 128 DMRMDPTRGMSAAEWIATASEQDLHEVIKNYGEERFSRQIARAIVAQREESPIDTTRKLA 187

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            L+ + V   +  +  PATR+FQA+RIF+N E+EE+   L      LK GG L V++FHS
Sbjct: 188 QLVAQNVRTRERGQ-DPATRTFQAVRIFINRELEEVEAVLPQVAGRLKEGGRLAVIAFHS 246

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK+F    S      R  +   A  P        K + P   +   N R+RSA L
Sbjct: 247 LEDRIVKQFIKKYSQHAPLPRWAVVKEADLPQPPLKAVGKAIKPGSAETEANPRARSAVL 306

Query: 312 RAGMRT 317
           R   R+
Sbjct: 307 RVAERS 312


>gi|229104481|ref|ZP_04235148.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus Rock3-28]
 gi|228678923|gb|EEL33133.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus Rock3-28]
          Length = 310

 Score =  182 bits (461), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 111/302 (36%), Positives = 168/302 (55%), Gaps = 9/302 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HV VLL++ +  L+  P    +D T G GG+S         G  +IA D+D  A+   +E
Sbjct: 4   HVTVLLKETVDGLDIKPDGTYVDCTLGGGGHSSYLLSQLTDGGKLIAFDQDEIAIQNAKE 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
               Y EQF   ++ F  L + + + G   VDG++FDLGVSS Q+D  +RGFS+    PL
Sbjct: 64  KFSSYGEQFITVKSNFRYLSEKLQELGITEVDGILFDLGVSSPQLDTPERGFSYHHDAPL 123

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     ++A DV+N  + + L RI    GEEK + +IA  I   R++   +TT +L 
Sbjct: 124 DMRMDQDAPLTAYDVINSWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTGELV 183

Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            LI++ +   ++    HPA R FQA+RI VN+E++   + L SA + +K GG + V++FH
Sbjct: 184 ELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRVSVITFH 243

Query: 252 SLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+ K  F   S    +     I  +      + IT+K ++P+  ++  N R+RSAK
Sbjct: 244 SLEDRICKTTFKRNSTTPPLPPGLPIIPDEFKPKLKLITRKPILPSDIELEENNRARSAK 303

Query: 311 LR 312
           LR
Sbjct: 304 LR 305


>gi|225077130|ref|ZP_03720329.1| hypothetical protein NEIFLAOT_02185 [Neisseria flavescens
           NRL30031/H210]
 gi|224951541|gb|EEG32750.1| hypothetical protein NEIFLAOT_02185 [Neisseria flavescens
           NRL30031/H210]
          Length = 320

 Score =  182 bits (461), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 114/306 (37%), Positives = 168/306 (54%), Gaps = 10/306 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQE 76
           HV VLL + +  L      + +D TFG GG+SR    ++G    ++  D+DP A++   E
Sbjct: 9   HVTVLLHEAVDALAIREDGIYVDGTFGRGGHSRLILSRLGEQGRLVVFDKDPEAIAVANE 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                K + S+    F   Q  + + G+D   G +FDLG+SS QID G RGFSF+   PL
Sbjct: 69  LAAQDK-RVSVVHNGFETFQTALDELGIDKIDGALFDLGISSPQIDDGSRGFSFRFDAPL 127

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  + G+SA++ +  A+ +DL  ++   GEE+ + +IA AIV +R+ +P  TT  L+
Sbjct: 128 DMRMDPTRGMSAAEWIATASEQDLHEVIKNYGEERFSRQIARAIVAQREESPIDTTHKLA 187

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            L+ + V   +  +  PATR+FQA+RIF+N E+EE+   L      LK GG L V++FHS
Sbjct: 188 QLVAQNVRTRERGQ-DPATRTFQAVRIFINRELEEVEAVLPQVAGRLKEGGRLAVIAFHS 246

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK+F    S      R  +   A  P        K + P   +   N R+RSA L
Sbjct: 247 LEDRIVKQFIKKYSQHAPLPRWAVVKEADLPQPPLKAVGKAIKPGSTETEANPRARSAVL 306

Query: 312 RAGMRT 317
           R   R+
Sbjct: 307 RVAERS 312


>gi|220933941|ref|YP_002512840.1| S-adenosyl-methyltransferase MraW [Thioalkalivibrio sp. HL-EbGR7]
 gi|262825935|sp|B8GMM1|RSMH_THISH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|219995251|gb|ACL71853.1| S-adenosyl-methyltransferase MraW [Thioalkalivibrio sp. HL-EbGR7]
          Length = 314

 Score =  182 bits (461), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 123/306 (40%), Positives = 174/306 (56%), Gaps = 11/306 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYS-RSFCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLLE+ +  L   P  + LD TFG GG+S R   ++G +  +IALDRDP A +    
Sbjct: 9   HRAVLLEEAVEALAVRPDGIYLDGTFGRGGHSGRILERLGPDGRLIALDRDPEAEAEAAR 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              D  E+F   + +F  LQ      G+    DGV+ DLGVSS Q+D  +RGFSF   GP
Sbjct: 69  RFGD-DERFHFERCSFEMLQQVTDRLGISGRLDGVLLDLGVSSPQLDTPERGFSFMSDGP 127

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM   SG SA+  + +AN  ++  +L   GEE+ A RIA  IV+ RQ  P + T+ L
Sbjct: 128 LDMRMDPESGESAAAWLARANEDEIAWVLKEYGEERFARRIARRIVETRQEMPLERTRQL 187

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI + V F + ++ HPATRSFQA+RI VN+E+E L + L      L  GG L V+SFH
Sbjct: 188 AELIAEAVPFKERHK-HPATRSFQAIRIRVNDELETLPRCLEQIPALLAPGGRLAVISFH 246

Query: 252 SLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK+F   ++ G+ +     +  +A       +  + +   + ++  N R+RSA 
Sbjct: 247 SLEDRMVKRFLRDQAEGERLPRGLPVQGDARRGQTLRLVGRAIRAGEAELDQNPRARSAV 306

Query: 311 LRAGMR 316
           LR   R
Sbjct: 307 LRVAER 312


>gi|330815435|ref|YP_004359140.1| S-adenosyl-methyltransferase MraW [Burkholderia gladioli BSR3]
 gi|327367828|gb|AEA59184.1| S-adenosyl-methyltransferase MraW [Burkholderia gladioli BSR3]
          Length = 313

 Score =  182 bits (461), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 120/311 (38%), Positives = 180/311 (57%), Gaps = 21/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  + +D TFG GG+SR        G  +IA D+DP A+     
Sbjct: 7   HRTVLLDEAVDALVTRPDGIYVDGTFGRGGHSRLVLDRLAEGGRLIAFDKDPLAIETAS- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             R    +FS+   +F+ L   + ++GV    GV+ DLGVSS QID  +RGFSF+ +GPL
Sbjct: 66  --RVGDTRFSIVHDSFASLGGALAERGVGRVTGVLLDLGVSSPQIDDPERGFSFRANGPL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTT 188
           DMRM  + G SA+D + +A++++LT ++   GEE+ A +IA A+V RR  +    P  +T
Sbjct: 124 DMRMDTTRGESAADWLARASLQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDST 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ ++   V   +  +  PATR+FQA+RI VN E+ +L   L SA  +L+ GG L+V+
Sbjct: 184 GELAQIVGHAVKTREKGK-DPATRTFQAIRIHVNQELADLQVVLESALSSLEQGGRLVVI 242

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNRR 305
           SFHSLEDR+VK+F  + +    AV   +P  A      S   K++    P + +VA N R
Sbjct: 243 SFHSLEDRIVKRFMQAHA-SAPAVDRRLPIRA--VDLPSPPLKLLGRKFPGEAEVAANPR 299

Query: 306 SRSAKLRAGMR 316
           +RSA +R   R
Sbjct: 300 ARSAVMRIAER 310


>gi|262037275|ref|ZP_06010755.1| S-adenosyl-methyltransferase MraW [Leptotrichia goodfellowii F0264]
 gi|261748703|gb|EEY36062.1| S-adenosyl-methyltransferase MraW [Leptotrichia goodfellowii F0264]
          Length = 307

 Score =  182 bits (461), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 107/306 (34%), Positives = 176/306 (57%), Gaps = 10/306 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H PVL ++V+  +      + +D T G GG++    K  S+   VIA+D+D  A++  ++
Sbjct: 4   HKPVLFDEVMENIIKKEKAIYVDCTLGGGGHTEGILKSSSDDSKVIAIDQDIEAINFAKK 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + +Y  +  +FQ  F  +   V   G   VD ++ D+GVSS Q+D  +RGFS++    L
Sbjct: 64  RLENYGNKMEIFQDNFRNIDTVVYFAGFNKVDRILMDIGVSSNQLDNIERGFSYKYEAKL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+    +SA DVVN+   K++  I+   GEE ++ +IA  IV+ R++   +TT +LS
Sbjct: 124 DMRMNKELSVSAYDVVNKFAEKEIADIIYKYGEEPKSRKIAKNIVEYRKNKNIETTVELS 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            ++ K++   K+ + HP+ R+FQA+RIFVN E+E L + L  A   L  GG L+V++FHS
Sbjct: 184 DIVIKSI--GKSMKKHPSKRTFQAIRIFVNKELEVLEEALDKAVNLLNKGGKLLVITFHS 241

Query: 253 LEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK+ F       +    + +      ++ + +TKK +    E++  N R+ SAKL
Sbjct: 242 LEDRMVKEKFRKYENPCVCPPELPVCVCKKESLGKIVTKKPITAKNEELEINNRAHSAKL 301

Query: 312 RAGMRT 317
           R   R+
Sbjct: 302 RIFERS 307


>gi|261367518|ref|ZP_05980401.1| S-adenosyl-methyltransferase MraW [Subdoligranulum variabile DSM
           15176]
 gi|282570299|gb|EFB75834.1| S-adenosyl-methyltransferase MraW [Subdoligranulum variabile DSM
           15176]
          Length = 307

 Score =  182 bits (461), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 116/300 (38%), Positives = 165/300 (55%), Gaps = 9/300 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77
           H+PVLL+  +  L   P  + LD T G  G+S    K      +I+LD+DP AV+   E 
Sbjct: 5   HIPVLLQPCLDGLAIDPTGIYLDGTAGGAGHSMQIAKRLTTGRLISLDQDPDAVAVATER 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++    Q  + QA F      + +     V+G + DLGVSS Q+D   RGFS+    PLD
Sbjct: 65  LKGLPAQ--VVQANFRDAARVLAELSIPAVNGALLDLGVSSHQLDDAARGFSYHADAPLD 122

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRMS  G +A+D+VN  + ++LTRIL   GEE  A +IA  IV  R   P  TT  L+ L
Sbjct: 123 MRMSQQGPTAADLVNTLDREELTRILRDYGEEPYAWQIAGKIVATRAEQPITTTLQLADL 182

Query: 195 IQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           +   V  ++  +  +PA R+FQA+RI VN+E++ L +GL +    L  GG L V++FHSL
Sbjct: 183 VASAVPPAERRKAKNPARRTFQAIRIAVNSELDVLNEGLDAIFNCLAPGGRLCVITFHSL 242

Query: 254 EDRLVKKFFASRSGKVMA-VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           EDRLVK  F   + +        I +       + IT+K +    E++  NRR+RSAKLR
Sbjct: 243 EDRLVKNKFRRWAQRCTCPPEQPICTCGGVPKAKLITRKPIEADAEELEHNRRARSAKLR 302


>gi|153814616|ref|ZP_01967284.1| hypothetical protein RUMTOR_00830 [Ruminococcus torques ATCC 27756]
 gi|145848110|gb|EDK25028.1| hypothetical protein RUMTOR_00830 [Ruminococcus torques ATCC 27756]
          Length = 311

 Score =  182 bits (461), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 108/304 (35%), Positives = 173/304 (56%), Gaps = 11/304 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQ 75
           +HV VLL + +  LN     V +DAT G GG++   C+ +GS    I +D+D  A+    
Sbjct: 4   EHVSVLLNETVDGLNVKLDGVYVDATLGGGGHAYEVCRRLGSKGRFIGIDQDADAIKAAG 63

Query: 76  ETMRDYKEQFSLFQATF----SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           E ++ + E+ ++ ++ +     QLQ+   DK VDG+V DLGVSS Q+D  +RGFS++   
Sbjct: 64  ERLKGFGEKVTIIRSNYRDMKPQLQNIGVDK-VDGIVIDLGVSSYQLDTAERGFSYRVDA 122

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM     ++A D+VN+ +  +L R++   GE+K A  IA  IV  R+  P +TT  
Sbjct: 123 PLDMRMDQRQKMTARDIVNEYSESELYRVIRDYGEDKFAKNIAKHIVAERRKNPIETTGQ 182

Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I   +    +    HP+ R+FQA+RI +N+E++ L + L    + L  GG + +++
Sbjct: 183 LNEIISHAIPMKFRKTSGHPSKRTFQAIRIELNHELDVLRESLDDMIEMLNPGGRICIIT 242

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK  F           H  +      +  + IT+K ++P++ +   N RS+S
Sbjct: 243 FHSLEDRIVKSAFRKNENPCTCPSHFPVCVCGKISKGKVITRKPILPSEAETESNSRSKS 302

Query: 309 AKLR 312
           AKLR
Sbjct: 303 AKLR 306


>gi|302877570|ref|YP_003846134.1| S-adenosyl-methyltransferase MraW [Gallionella capsiferriformans
           ES-2]
 gi|302580359|gb|ADL54370.1| S-adenosyl-methyltransferase MraW [Gallionella capsiferriformans
           ES-2]
          Length = 311

 Score =  182 bits (461), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 119/306 (38%), Positives = 176/306 (57%), Gaps = 12/306 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76
           H  VLL + +  L   P  + LD TFG GG+S    + +G+N  +IALD+D  AVS G E
Sbjct: 7   HTTVLLAEAVEALAIKPDGIYLDCTFGRGGHSALILQQLGANGRLIALDKDMTAVSHGLE 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +F +  + F+ L + + + GV   DG++ DLGVSS Q+D   RGFSF+   PL
Sbjct: 67  WQ---DARFKMVHSGFTHLAEVLRELGVERVDGILLDLGVSSPQLDEAARGFSFRFDAPL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  S G +A+  +  A+   LT ++   GEE+ A +IA AI+  R+  P QTT  L 
Sbjct: 124 DMRMDNSRGPTAAQWLETADEGLLTEVIRDYGEERFAKQIARAIIVAREIQPIQTTGQLV 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            L+ KTV   +  + +PATR+FQA+RI++N E+EEL Q L      LK GG L V+SFHS
Sbjct: 184 ELVGKTVRTRETGK-NPATRTFQAIRIYLNQELEELKQVLPQCVTHLKPGGRLAVISFHS 242

Query: 253 LEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK F    +      R++ I ++  P    ++  + +   ++++  N R+RSA +
Sbjct: 243 LEDRMVKHFIRDMNDADKLPRNVPIRASEVPKGKLNLIGRAIKAGKDELNSNPRARSAVM 302

Query: 312 RAGMRT 317
           R   R+
Sbjct: 303 RVAERS 308


>gi|304404001|ref|ZP_07385663.1| S-adenosyl-methyltransferase MraW [Paenibacillus curdlanolyticus
           YK9]
 gi|304346979|gb|EFM12811.1| S-adenosyl-methyltransferase MraW [Paenibacillus curdlanolyticus
           YK9]
          Length = 317

 Score =  182 bits (461), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 114/309 (36%), Positives = 169/309 (54%), Gaps = 16/309 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HV VL+E+ I  L   P  + +D T G  G+S         G  +IA D+D +A    + 
Sbjct: 4   HVTVLMEEAIDGLAVKPDGIYVDCTLGGAGHSSGIVSRLGGGGRLIAFDQDDWAHDNARI 63

Query: 77  TMRDYKEQFSLFQATFSQLQ------DYVPDKG----VDGVVFDLGVSSMQIDCGDRGFS 126
            +    ++ +L ++ F  L+      + VP K     VDG++FDLGVSS Q+D  +RGFS
Sbjct: 64  RLASSMDKVTLIKSNFRYLEQRLLECEGVPQKDGIPQVDGILFDLGVSSPQLDEAERGFS 123

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           +    PLDMRM     ++A D+VN  + +D+ RIL   GEEK A +IA  I   R +AP 
Sbjct: 124 YNHDAPLDMRMDRDIALTAGDIVNTWDERDIARILMEYGEEKFARKIAREIGAARANAPI 183

Query: 186 QTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           +TT +L  LI+  +   ++    HPA R+FQALRI VN+E++     L  A + LK GG 
Sbjct: 184 ETTGELVELIKAGIPAAARRTGGHPAKRTFQALRIAVNDELDAEEDALEQAIRCLKPGGR 243

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFN 303
             V++FHSLEDR+ K+ FA    K        +         + + +K +VP++E++  N
Sbjct: 244 ASVITFHSLEDRICKQTFAKYLEKCSCPPDFPLCVCGGQGALKLVNRKPIVPSEEELEAN 303

Query: 304 RRSRSAKLR 312
            R+RSAKLR
Sbjct: 304 PRARSAKLR 312


>gi|302518535|ref|ZP_07270877.1| LOW QUALITY PROTEIN: MraW methylase [Streptomyces sp. SPB78]
 gi|302427430|gb|EFK99245.1| LOW QUALITY PROTEIN: MraW methylase [Streptomyces sp. SPB78]
          Length = 293

 Score =  182 bits (461), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 102/247 (41%), Positives = 149/247 (60%), Gaps = 10/247 (4%)

Query: 18  GDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVS 72
           G HVPV+L + + LL PA   PG V++D T G GG+S +       + ++ALDRD  A+ 
Sbjct: 29  GRHVPVMLRRCLDLLGPALAEPGAVVVDCTLGLGGHSEALLSTFPAARLVALDRDKEALR 88

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK 129
              E +  + E+  L  A + +L D +   G   V G++FDLGVSSMQ+D  DRGF++ +
Sbjct: 89  LAGERLAPFGERAMLAHAVYDELPDVLDRLGIPRVQGILFDLGVSSMQLDEADRGFAYAQ 148

Query: 130 SGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM   +G+SA++V+N     +L RIL   GEEKQA RI  A+V+ R+  PF  +
Sbjct: 149 DAPLDMRMDQTAGLSAAEVLNTYPPGELVRILRTYGEEKQARRIVSAVVREREKEPFARS 208

Query: 189 QDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
             L  LI++ +   +K    +PA R+FQALRI VN E+  L + + +A   L  GG + V
Sbjct: 209 ARLVELIREALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVNTLAVGGRIAV 268

Query: 248 VSFHSLE 254
           +++HSLE
Sbjct: 269 LAYHSLE 275


>gi|160915591|ref|ZP_02077802.1| hypothetical protein EUBDOL_01601 [Eubacterium dolichum DSM 3991]
 gi|158432711|gb|EDP11000.1| hypothetical protein EUBDOL_01601 [Eubacterium dolichum DSM 3991]
          Length = 311

 Score =  182 bits (461), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 114/302 (37%), Positives = 170/302 (56%), Gaps = 9/302 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77
           H  VLL + +  L      + +D T G GG+S    +     ++ A DRD  A+   +E 
Sbjct: 4   HYSVLLSECLEGLAIRADGIYVDGTLGRGGHSAQILQRIPKGHLYAFDRDETAIKESKER 63

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +      F+L    FS L++ + ++G+   DG++ DLGVSS Q D G+RGFS++   PLD
Sbjct: 64  LLSIASNFTLIHNQFSMLKEELSNRGIYQIDGMLLDLGVSSPQFDDGERGFSYRYDAPLD 123

Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM  S   +A DVVN  +  +L RI    GEEK A +IA  I K+R   P  TT +L  
Sbjct: 124 MRMDQSQQKNAYDVVNSYDYHELVRIFYQYGEEKFAKQIAKNIEKQRAIKPIATTFELVE 183

Query: 194 LIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +I+ ++     N + HPA + FQA+RI VN+E++E+   L+ A   L  GG L V+SF S
Sbjct: 184 VIKASLPAKVLNKKGHPAKKVFQAIRIEVNDELKEIETVLQDAMDMLAVGGRLCVISFQS 243

Query: 253 LEDRLVKKFFASRS--GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           LEDR+VK+ F  RS   KV     M+P +     ++ + +K ++ ++E++  N RS SAK
Sbjct: 244 LEDRIVKEAFHERSTPKKVDKRIPMLPQDIETVDYRLVNRKPIIASEEELEENNRSHSAK 303

Query: 311 LR 312
           LR
Sbjct: 304 LR 305


>gi|325288822|ref|YP_004265003.1| Ribosomal RNA small subunit methyltransferase H [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324964223|gb|ADY55002.1| Ribosomal RNA small subunit methyltransferase H [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 310

 Score =  182 bits (461), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 121/304 (39%), Positives = 177/304 (58%), Gaps = 12/304 (3%)

Query: 19  DHVPVLL-EKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCG 74
           +H  VLL E V ++L  A G  + D TFG GG+SR   +  S+   +IA D+D  A    
Sbjct: 4   EHTSVLLKETVDSVLTKADGTYV-DCTFGGGGHSRLLLEKLSDQAKLIAFDQDEKAYLNA 62

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +      K +   F+  F  +++ +  +G   V G++FDLGVSS Q+D  +RGFS++   
Sbjct: 63  RCRFAGDK-RVIFFRRNFVHMENTLDTEGLLPVTGIMFDLGVSSPQLDEAERGFSYRHDA 121

Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  S   SA+++VN  +  +LTRI+   GEEK ASRI+  IV+ R+    +TT  
Sbjct: 122 PLDMRMDRSAEFSAAELVNGWDEAELTRIIRAYGEEKWASRISKFIVEARKEQEIKTTGR 181

Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I+  V   ++    HPA R+FQALRI VN E++ LA+ L  A + L +GG L V++
Sbjct: 182 LVEIIKAAVPAGARKEGPHPAKRTFQALRIAVNRELDVLAEALDQALRCLDSGGRLAVIT 241

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR VK+      G+    +   + +    A  + IT+K V+P+ E++  N RSRS
Sbjct: 242 FHSLEDRTVKEKILEWLGRCTCPQGFPVCTCGARAQVKQITRKPVIPSNEEIENNPRSRS 301

Query: 309 AKLR 312
           AKLR
Sbjct: 302 AKLR 305


>gi|171316199|ref|ZP_02905422.1| S-adenosyl-methyltransferase MraW [Burkholderia ambifaria MEX-5]
 gi|171098613|gb|EDT43410.1| S-adenosyl-methyltransferase MraW [Burkholderia ambifaria MEX-5]
          Length = 313

 Score =  181 bits (460), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 117/312 (37%), Positives = 181/312 (58%), Gaps = 21/312 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  + +D TFG GG+SR+          +IA D+DP A+   Q 
Sbjct: 7   HRTVLLDEAVESLVTRPDGIYVDGTFGRGGHSRAVLARLAEAGRLIAFDKDPRAIETAQ- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             R    +FS+   +F+ ++D +  +G++   GV+ DLGVSS Q+D   RGFSF+  GPL
Sbjct: 66  --RIEDARFSIVHDSFASMRDALAARGIEKVSGVLLDLGVSSPQVDDPARGFSFRADGPL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTT 188
           DMRM  + G SA++ + +A+V++LT ++   GEE+ A +IA A+V RR  +    P  TT
Sbjct: 124 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDTT 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ ++   V   +  +  PATR+FQA+RI VN E+ +L   L +A   L+ GG L+V+
Sbjct: 184 GELAQIVGHVVKTREKGK-DPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVI 242

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNRR 305
           SFHSLEDR+VK+F  + +    AV   +P  A      S + K++    P++ +V  N R
Sbjct: 243 SFHSLEDRIVKRFMQAHA-SAPAVDRRLPIRA--VDLPSPSLKIISRQFPSEAEVVANPR 299

Query: 306 SRSAKLRAGMRT 317
           +RSA +R   R 
Sbjct: 300 ARSAVMRIAERV 311


>gi|297583942|ref|YP_003699722.1| S-adenosyl-methyltransferase MraW [Bacillus selenitireducens MLS10]
 gi|297142399|gb|ADH99156.1| S-adenosyl-methyltransferase MraW [Bacillus selenitireducens MLS10]
          Length = 317

 Score =  181 bits (460), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 112/304 (36%), Positives = 172/304 (56%), Gaps = 11/304 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYS-RSFCKMGSN--VIALDRDPFAVSCGQ 75
           +H  VL E+ +  L   PG V +D T G GG+S R   ++G +  +IA D+D  A++  +
Sbjct: 3   EHDTVLREETVEGLAIRPGGVYVDCTLGGGGHSERILQELGEDGKLIAFDQDESAIAHAK 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E ++ Y ++  + +  F  L++ +   G   VDG++FDLGVSS Q D  +RGFS++   P
Sbjct: 63  ERLKPYGDRLHIVKRNFRFLKEELEKLGYREVDGIIFDLGVSSPQFDVPERGFSYRFDAP 122

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM   S ++A  V+N+ + +DL +I    GEEK A  IA  I K R++ P +TT +L
Sbjct: 123 LDMRMDQTSELTAHKVINEWSFEDLMKIFSRYGEEKFAKYIARKIEKYRETKPVETTFEL 182

Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+  +   ++    HPA R+FQA+RI VN+E+    + L  A      GG + V++F
Sbjct: 183 VEIIKDAIPAPARRKGGHPAKRTFQAIRIAVNDELGVFEKALEDAVTMTAPGGRIAVITF 242

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+ K+ F   S      R M  +P    P V + I +K +    +++  N RS S
Sbjct: 243 HSLEDRICKQLFRKLSQPPELPRGMPVVPEGYEP-VLKLINRKPITANVDELDDNHRSHS 301

Query: 309 AKLR 312
           AKLR
Sbjct: 302 AKLR 305


>gi|296129435|ref|YP_003636685.1| S-adenosyl-methyltransferase MraW [Cellulomonas flavigena DSM
           20109]
 gi|296021250|gb|ADG74486.1| S-adenosyl-methyltransferase MraW [Cellulomonas flavigena DSM
           20109]
          Length = 333

 Score =  181 bits (460), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 111/307 (36%), Positives = 176/307 (57%), Gaps = 10/307 (3%)

Query: 20  HVPVLLEKVI---ALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCG 74
           HVPVLLE+ +   A    APG V++D T G GG++    +   +V  + +DRDP A++  
Sbjct: 12  HVPVLLERCVELLAPALAAPGAVLVDCTLGMGGHTEGVLRAIEHVRVVGIDRDPQALALA 71

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            E +  + E+F+   A + ++ D V      GV GV+ DLGVSS+Q+D  +RGF++    
Sbjct: 72  SERLAPFGERFTGVHAVYDEIGDVVERLGLPGVQGVLMDLGVSSLQLDEAERGFAYAHDA 131

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM   +G +A+DV+N  + +D+ R+L + GEE+ A+RIA  +V+ R+  P   T +
Sbjct: 132 PLDMRMDPTTGPTAADVLNTYDERDIARVLRVYGEERFAARIARGVVRFRERTPLTRTSE 191

Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +++  V   ++    HPA R+FQALRI VN E+  L + L +A   L  GG ++V S
Sbjct: 192 LVDIVRAGVPAATRRTGGHPAKRTFQALRIEVNGELAALERALPAAIDVLAVGGRIVVES 251

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           + SLEDRLVK+  A+ +         +    H    + +T+      + ++A N R++S 
Sbjct: 252 YQSLEDRLVKRALAAGATSSAPPDLPVEPVTHAPYLRLLTRGAEEADEAELARNPRAQSV 311

Query: 310 KLRAGMR 316
           +LRA  R
Sbjct: 312 RLRAAER 318


>gi|229822998|ref|ZP_04449068.1| hypothetical protein GCWU000282_00291 [Catonella morbi ATCC 51271]
 gi|229787811|gb|EEP23925.1| hypothetical protein GCWU000282_00291 [Catonella morbi ATCC 51271]
          Length = 314

 Score =  181 bits (460), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 115/305 (37%), Positives = 173/305 (56%), Gaps = 13/305 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMG--SNVIALDRDPFAVSCGQE 76
           H  VLL + +  L+  P  V +D T G  G+++    ++G   ++ A D+D  A++  + 
Sbjct: 5   HETVLLHETVDGLDIKPDGVYVDCTLGGAGHAQYLLGQLGPQGHLYAFDQDMTAINNAKL 64

Query: 77  TMRDYKE--QFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            + DY E  Q +     F  L+  + + G   VDG+ +DLGVSS Q+D  +RGFS+ +  
Sbjct: 65  KLADYVEKGQVTFIHQNFRHLKQALEELGISQVDGIYYDLGVSSPQLDVAERGFSYGQEA 124

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM+    +SA +VVN+   +DL  IL   GEEK A RIA AI +RR   P +TT +
Sbjct: 125 RLDMRMNQEQALSAYEVVNEWPYEDLVHILYRYGEEKFAKRIARAIEERRAQRPIETTTE 184

Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +++  +   ++    HPA RSFQA+RI VN+E+  +   L  A   LK  G + V++
Sbjct: 185 LAEIVKMAIPAATRRTGGHPAKRSFQAIRIAVNDELGAVEDSLEQALTLLKPEGRVSVIT 244

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           FHSLEDRLVK+ F   S +    R +  +P     A F  + +K +V + E++  N RSR
Sbjct: 245 FHSLEDRLVKQLFKEVSQEPEVPRGLPVLPGQMQ-APFTLVNRKPIVASPEELEANNRSR 303

Query: 308 SAKLR 312
           SAKLR
Sbjct: 304 SAKLR 308


>gi|224476281|ref|YP_002633887.1| S-adenosyl-methyltransferase MraW [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|262826678|sp|B9DPQ9|RSMH_STACT RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|222420888|emb|CAL27702.1| putative MraW methylase family S-adenosyl-methyltransferase
           [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 311

 Score =  181 bits (460), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 111/306 (36%), Positives = 170/306 (55%), Gaps = 13/306 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HV V+L + I  LN     V +D T G  G++           ++IA+D+D  A+   +E
Sbjct: 4   HVSVMLRETIDELNVKKDGVYVDCTLGGAGHALYLLNQLDENGHLIAIDQDLTAIENAKE 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++D+ +Q +   + F Q+   + D     VDG+ +DLGVSS Q+D  +RGFS+ +   L
Sbjct: 64  VLKDHLDQVTFVHSNFRQINQILDDLDIDKVDGIYYDLGVSSPQLDVPERGFSYHQDARL 123

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     +SA +VVN+   +DL RI    GEEK + +IA  I K R++ P +TT  L 
Sbjct: 124 DMRMDQTQELSAYEVVNEWPYEDLVRIFYRYGEEKFSKQIARRIEKTRENEPIETTLQLV 183

Query: 193 SLIQKTVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
            +I++ +  +K  R   HPA R FQA+RI VN+E++     L  A + +K  G + V++F
Sbjct: 184 DVIKEGIP-AKARRKGGHPAKRVFQAIRIAVNDELKAFEDSLEQAIERVKVHGRISVITF 242

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           HSLEDRL K+ F          R +  IP    P + + + +K +  ++ED+A N R+RS
Sbjct: 243 HSLEDRLCKQIFQEYEKGPEVPRGLPIIPEEYTPKL-KRVNRKPISASEEDLAENNRARS 301

Query: 309 AKLRAG 314
           AKLR  
Sbjct: 302 AKLRVA 307


>gi|153874645|ref|ZP_02002785.1| Bacterial methyltransferase [Beggiatoa sp. PS]
 gi|152068890|gb|EDN67214.1| Bacterial methyltransferase [Beggiatoa sp. PS]
          Length = 339

 Score =  181 bits (460), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 119/324 (36%), Positives = 177/324 (54%), Gaps = 30/324 (9%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQ 75
           +H PVLL + +  L      + +D TFG GG++++    +G +  V+A D+DP AV   +
Sbjct: 12  EHQPVLLAEALKALTIYDDSIYIDCTFGRGGHTKAILNDLGPSGQVLAFDQDPEAVQIAK 71

Query: 76  E-TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
              + D +  F++  + F+QLQ  V  +G    V+GV+ DLGVSS Q++   RGFSF   
Sbjct: 72  ALCLTDNR--FNIIYSPFTQLQQQVEKRGWLGQVNGVLLDLGVSSPQLNTPTRGFSFMHD 129

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
           GPLDMRM+  SG S  + +NQA+  ++  +L   GEE+ A  IA AIV  R  A  +TT 
Sbjct: 130 GPLDMRMNPNSGTSIGEWLNQADTDEIALVLKTYGEERHARHIAKAIVMARSKAELKTTC 189

Query: 190 DLSSLI--------QKTVYFSKNNRI-------HPATRSFQALRIFVNNEIEELAQGLRS 234
            L+ +I        +K  + S + +        HPAT++FQALRIF+N+E+E+L Q L  
Sbjct: 190 QLAEIISAVSIPYPKKMAHSSSSLKWGTQKKFKHPATQTFQALRIFINHELEQLQQVLPQ 249

Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKV 292
           A   L  GG L+V+SFHSLEDR+VK+F     R         +      P++      K 
Sbjct: 250 ALDVLAPGGRLVVISFHSLEDRIVKRFIRDCVRGDDFPPTMPITADQLSPSLLA--IGKP 307

Query: 293 VVPTQEDVAFNRRSRSAKLRAGMR 316
           + PT  +   N R+RSA +R   +
Sbjct: 308 IKPTLAETQANPRARSAIMRVAEK 331


>gi|296329280|ref|ZP_06871781.1| S-adenosyl-methyltransferase MraW [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|296153636|gb|EFG94453.1| S-adenosyl-methyltransferase MraW [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 314

 Score =  181 bits (460), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 109/313 (34%), Positives = 176/313 (56%), Gaps = 20/313 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+PVL  + +  L   P    +D T G G +S    +  S+   +I++D+D  A+   ++
Sbjct: 9   HIPVLYYETLDNLVINPDGTYIDCTLGGGSHSEGILERLSDKGLLISIDQDTNAIVYSKK 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  +  ++ +F+  F  +       GVD   G++ D+GVSS Q+D  +RGFS++    L
Sbjct: 69  RLEKFGSKWKVFKGNFENIDTIAYMAGVDKVDGILMDIGVSSKQLDDPERGFSYRYDVKL 128

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+    ISA DVVN  + + L++I+   GEE+ A +IA  IV+ R+S+P + T DL 
Sbjct: 129 DMRMNTDQKISAYDVVNTYSEEQLSKIIFEYGEERHARKIAKLIVEERKSSPIEKTSDLI 188

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +LI++   + +    HPA ++FQA+RI VN E+E L   +  A + LK GG L +++FHS
Sbjct: 189 ALIKRA--YPERASKHPAKKTFQAIRIEVNRELEVLENAMSKATELLKVGGRLAIITFHS 246

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV------FQSITKKVVVPTQEDVAFNRRS 306
           LEDR+VK  F     K +A     P +    V      F+ ITKK ++P  +++  N R+
Sbjct: 247 LEDRIVKNKF-----KDLATACKCPKDIPICVCGGVKKFEVITKKPIIPIDDELKNNNRA 301

Query: 307 RSAKLRAGMRTVE 319
            S+KLR   R ++
Sbjct: 302 HSSKLRILERILD 314


>gi|257885174|ref|ZP_05664827.1| methyltransferase [Enterococcus faecium 1,231,501]
 gi|261206514|ref|ZP_05921214.1| methyltransferase [Enterococcus faecium TC 6]
 gi|289565424|ref|ZP_06445873.1| methylase MraW [Enterococcus faecium D344SRF]
 gi|294614715|ref|ZP_06694617.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium E1636]
 gi|294618987|ref|ZP_06698482.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium E1679]
 gi|257821026|gb|EEV48160.1| methyltransferase [Enterococcus faecium 1,231,501]
 gi|260079224|gb|EEW66915.1| methyltransferase [Enterococcus faecium TC 6]
 gi|289162753|gb|EFD10604.1| methylase MraW [Enterococcus faecium D344SRF]
 gi|291592453|gb|EFF24060.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium E1636]
 gi|291594648|gb|EFF26030.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium E1679]
          Length = 319

 Score =  181 bits (460), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 112/304 (36%), Positives = 175/304 (57%), Gaps = 12/304 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H  V+L++ +  LN  P  V +D T G  G+S       S   ++ A D+D  A+   + 
Sbjct: 7   HYTVMLKETVDGLNIKPDGVYVDCTLGGAGHSEYLLSQLSSKGHLYAFDQDQKAIDHAKL 66

Query: 77  TMRDYKEQ--FSLFQATFSQLQDYVPDK--GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            +  Y EQ   +  +A F +L++ + +    VDG+++DLGVSS Q+D  +RGFS+ +  P
Sbjct: 67  RLASYVEQGMVTFIKANFRELEERLSEHVDKVDGILYDLGVSSPQLDEAERGFSYHQDAP 126

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S  +SA  V+N+ +  +L +I    GEEK + +IA  I + R++ P QTT +L
Sbjct: 127 LDMRMDQSAPLSAYHVINEYSYHELVKIFFRYGEEKFSKQIAREIERVRKTKPIQTTGEL 186

Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I++ +   ++    HPA R FQA+RI VN+E+      L  A + LK  G + V++F
Sbjct: 187 VEIIKQVIPAPARRKGGHPAKRIFQAVRIAVNDELGAEEASLEQAIRLLKVNGRISVITF 246

Query: 251 HSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+VK  F   S    +     +IP    P + + IT+K ++P++E++A N RSRS
Sbjct: 247 HSLEDRIVKSMFKEYSTVQDLPPGLPVIPDEFQPEL-KVITRKPILPSEEELAENNRSRS 305

Query: 309 AKLR 312
           AKLR
Sbjct: 306 AKLR 309


>gi|294788560|ref|ZP_06753802.1| S-adenosyl-methyltransferase MraW [Simonsiella muelleri ATCC 29453]
 gi|294483437|gb|EFG31122.1| S-adenosyl-methyltransferase MraW [Simonsiella muelleri ATCC 29453]
          Length = 320

 Score =  181 bits (460), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 119/314 (37%), Positives = 176/314 (56%), Gaps = 25/314 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQE 76
           H+ VLL + +  LN     V +D TFG GG+SR    ++G +  +I  D+DP A+   QE
Sbjct: 9   HITVLLHEAVDALNIRADGVYVDGTFGRGGHSRLILSRLGESGRLIVFDKDPQAIEVAQE 68

Query: 77  TMRDYK------EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
             +  K        FS FQ     L++ +    +DG +FDLG+SS QID   RGFSF+  
Sbjct: 69  LAKQDKRVKVIHNGFSHFQVA---LKNDLGLNHIDGALFDLGISSPQIDDASRGFSFRFD 125

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM  + G SA+D +  A+ +++  ++   GEE+ + +IA AIV +R+ +P  TT 
Sbjct: 126 APLDMRMDTTRGQSAADWLAIADEQEIHEVIKNYGEERFSRQIARAIVTQREDSPIITTN 185

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            L+ +  + V   +  +  PATR+FQA+RIF+N E++E+   L      L  GG L V++
Sbjct: 186 QLAKITAQVVRTRERGQ-DPATRTFQAIRIFINRELDEIQAVLPQVVAHLNIGGRLAVIA 244

Query: 250 FHSLEDRLVKKFFASRSG-----KVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFN 303
           FHSLEDRLVK+F  + S      K  A+R   +P     AV      K + P+ +++A N
Sbjct: 245 FHSLEDRLVKQFIRTHSTHAPLPKWAAIRETDLPQPPLLAV-----GKAIKPSDDEIAHN 299

Query: 304 RRSRSAKLRAGMRT 317
            R+RSA LR   RT
Sbjct: 300 PRARSAVLRIAERT 313


>gi|187925450|ref|YP_001897092.1| S-adenosyl-methyltransferase MraW [Burkholderia phytofirmans PsJN]
 gi|263446934|sp|B2SYY3|RSMH_BURPP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|187716644|gb|ACD17868.1| S-adenosyl-methyltransferase MraW [Burkholderia phytofirmans PsJN]
          Length = 317

 Score =  181 bits (460), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 122/311 (39%), Positives = 181/311 (58%), Gaps = 21/311 (6%)

Query: 20  HVPVLLEKVI-ALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
           H  VLLE+ + AL+  A G V +D TFG GG+SR   +       +IA D+DP A++  Q
Sbjct: 11  HRTVLLEEAVQALVTRADG-VYVDGTFGRGGHSRLVLEKLAESGRLIAFDKDPLAIATAQ 69

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           +       +F +   +F+ L+  + ++GV    GV+ DLG+SS QID  +RGFSF+  GP
Sbjct: 70  QIA---DPRFGIVHESFASLRTAIAERGVGRVSGVLLDLGISSPQIDDPERGFSFRADGP 126

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQT 187
           LDMRM  + G SA+D + +A V++LT ++   GEE+ A +IA A+V RR  +    P  +
Sbjct: 127 LDMRMDPTRGESAADWLARATVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLVS 186

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T +L+ ++   V   +  +  PATR+FQA+RI +N E+ EL   L +A   L+ GG L+V
Sbjct: 187 TGELAQIVANVVKTREKGK-DPATRTFQAIRIHINQELAELQVVLEAALSLLEQGGRLVV 245

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA--HPAVFQSITKKVVVPTQEDVAFNRR 305
           +SFHSLEDR+VK+F  + +    AV   +P  A   P+    I  +V     E VA N R
Sbjct: 246 ISFHSLEDRIVKRFMQAHA-STPAVDRRLPIRAVDLPSPPLKIIGRVFASDAE-VAANPR 303

Query: 306 SRSAKLRAGMR 316
           +RSA +R   R
Sbjct: 304 ARSAVMRVAER 314


>gi|261379351|ref|ZP_05983924.1| S-adenosyl-methyltransferase MraW [Neisseria subflava NJ9703]
 gi|284797791|gb|EFC53138.1| S-adenosyl-methyltransferase MraW [Neisseria subflava NJ9703]
          Length = 320

 Score =  181 bits (460), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 114/306 (37%), Positives = 169/306 (55%), Gaps = 10/306 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQE 76
           HV VLL + +  L      + +D TFG GG+SR    ++G    ++  D+DP A++   E
Sbjct: 9   HVTVLLHEAVDALAIREDGIYVDGTFGRGGHSRLILSRLGKQGRLVVFDKDPEAIAVANE 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                K + S+    F   Q  + + G+D   G +FDLG+SS QID G RGFSF+   PL
Sbjct: 69  LAVQDK-RVSVVHNGFETFQTALDELGIDKIDGALFDLGISSPQIDDGSRGFSFRFDAPL 127

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  + G+SA++ +  A+ +DL  ++   GEE+ + +IA AIV +R+ +P  TT+ L+
Sbjct: 128 DMRMDPTRGMSAAEWIATASEQDLHEVIKNYGEERFSRQIARAIVAQREESPIDTTRKLA 187

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            L+ + V   +  +  PATR+FQA+RIF+N E+EE+   L      LK GG L V++FHS
Sbjct: 188 QLVAQNVRTRERGQ-DPATRTFQAVRIFINRELEEVEAVLPQVAGRLKEGGRLAVIAFHS 246

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK+F    S      R  +   A  P        K + P   +   N R+RSA L
Sbjct: 247 LEDRIVKQFIKKYSQHAPLPRWAVVKEADLPQPPLKAVGKAIKPGSTETETNPRARSAVL 306

Query: 312 RAGMRT 317
           R   R+
Sbjct: 307 RVAERS 312


>gi|315222117|ref|ZP_07864026.1| S-adenosyl-methyltransferase MraW [Streptococcus anginosus F0211]
 gi|315188743|gb|EFU22449.1| S-adenosyl-methyltransferase MraW [Streptococcus anginosus F0211]
          Length = 316

 Score =  181 bits (460), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 114/309 (36%), Positives = 177/309 (57%), Gaps = 14/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQE 76
           HV VLL + I  L+  P  V +DAT G  G+S     K+G N  + A D+D  A+   Q+
Sbjct: 7   HVTVLLHETIDQLDIKPNGVYVDATLGGAGHSEYLLSKLGENGRLYAFDQDQTAIEHAQK 66

Query: 77  TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y EQ   +     F  L+  + + GV   DG+ +DLGVSS Q+D  +RGFS+++  
Sbjct: 67  RLASYVEQGMVTFINDNFRHLKARLNELGVEEIDGICYDLGVSSPQLDERERGFSYKQDA 126

Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+    ++A +VVNQ +  DL RI    GE+K + +IA  I + R+  P +TT +
Sbjct: 127 PLDMRMNREAKLTAYEVVNQYSYHDLVRIFFKYGEDKFSKQIARKIEQMREKKPIETTTE 186

Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L+ +I K+   +K    + HPA + FQA+RI VN+E+    + ++ A   L   G + V+
Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDLLAVDGRISVI 245

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F   S  +V      IP +  P + + +T+K ++P++E++  N R+ 
Sbjct: 246 TFHSLEDRLTKQLFKEASTVEVPKGLPFIPEDLQPKM-KLVTRKPILPSKEELDNNNRAH 304

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 305 SAKLRVAQK 313


>gi|319949143|ref|ZP_08023234.1| 16S rRNA m(4)C1402 methyltranserfase [Dietzia cinnamea P4]
 gi|319437192|gb|EFV92221.1| 16S rRNA m(4)C1402 methyltranserfase [Dietzia cinnamea P4]
          Length = 340

 Score =  181 bits (460), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 109/317 (34%), Positives = 169/317 (53%), Gaps = 26/317 (8%)

Query: 20  HVPVLLEKVIALLNP----------APGKVILDATFGAGGYSRSF-CKMGS-NVIALDRD 67
           HVPV LE+ I L  P          AP  VI+D T G GG+S     + G   V+ +DRD
Sbjct: 16  HVPVFLERTIELFRPVVEAAAEEGRAP--VIVDGTLGLGGHSSHLLAEFGELRVLGVDRD 73

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYV----PD------KGVDGVVFDLGVSSMQ 117
           P A+      +  Y+++F+   A F      +    PD        +DG++ D GVSSMQ
Sbjct: 74  PEALDMATRRLTAYRDRFTPVHARFDDFNSVIAALPPDARDDAGPAIDGILLDFGVSSMQ 133

Query: 118 IDCGDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
           +D  +RGF++    PLDMRM   +G +A+D++ +    +L RIL + GEE+ A +IA AI
Sbjct: 134 LDVAERGFAYSVDAPLDMRMDPTTGPTAADILAEYPRDELARILRVYGEERFARQIAAAI 193

Query: 177 VKRRQSAPFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           V+RR + P  T+  L  L+  T+   ++    HP  R FQALRI VN E+E +   +   
Sbjct: 194 VRRRDTDPIVTSSQLVELLYDTIPQGARRTGGHPGKRVFQALRIEVNAELEAVENAVPGY 253

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295
              L+ GG  + +++HSLED++VK+  A+R+         +    H   F+++T+     
Sbjct: 254 LDLLRLGGRAVFMAYHSLEDKIVKRELATRTASRTPAGLPVELPGHGPEFEAVTRGAEKA 313

Query: 296 TQEDVAFNRRSRSAKLR 312
           +QE++  N RS S ++R
Sbjct: 314 SQEEIDHNPRSASVRVR 330


>gi|227497582|ref|ZP_03927805.1| S-adenosyl-methyltransferase [Actinomyces urogenitalis DSM 15434]
 gi|226832951|gb|EEH65334.1| S-adenosyl-methyltransferase [Actinomyces urogenitalis DSM 15434]
          Length = 363

 Score =  181 bits (460), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 116/317 (36%), Positives = 184/317 (58%), Gaps = 24/317 (7%)

Query: 20  HVPVLLEKVIALLNPA----PGK-VILDATFGAGGYS----RSFCKMGSNVIALDRDPFA 70
           H PVLL + + LL PA    P + V++D T G GG++    R F ++   VI +DRD  A
Sbjct: 24  HTPVLLRRCLDLLAPAIEEAPAEPVMIDCTLGMGGHTEGALRRFPRL--RVIGIDRDSQA 81

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYV------PDKGVDGVVFDLGVSSMQIDCGDRG 124
           ++     +  + ++F+  +AT+ +++          +  VD V+ DLGVSS+Q+D  +RG
Sbjct: 82  IALASARLAPFGDRFTAVRATYDEVEAVAHRFSQDGEGTVDAVLMDLGVSSLQLDDVERG 141

Query: 125 FSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           FS+ +  PLDMRM  S G++A ++++ A   +L RIL   GEE+ A RI  AIV+RR + 
Sbjct: 142 FSYARPAPLDMRMDQSQGMTAQELLDGAEPGELVRILRAYGEERFAPRIVEAIVRRRSAG 201

Query: 184 -PFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            P  +TQ+L+ L+++ V   ++    HPA R+FQALRI VN E++ L + +  A  +L+ 
Sbjct: 202 HPVSSTQELAELVRQAVPAATRRTGGHPAKRTFQALRIAVNAELDVLERAVPRALNSLRV 261

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQED 299
           GG L+V S+ SLEDR+VK+  A  +G   +V   +P       A  Q++T       + +
Sbjct: 262 GGRLVVESYQSLEDRIVKQAIA--AGTRASVPDDLPFVPEGAGAYLQALTHGAERADEAE 319

Query: 300 VAFNRRSRSAKLRAGMR 316
           +A N RS   +LRA +R
Sbjct: 320 LAANPRSAPVRLRAAVR 336


>gi|325956496|ref|YP_004291908.1| 16S rRNA m(4)C1402 methyltranserfase [Lactobacillus acidophilus
           30SC]
 gi|325333061|gb|ADZ06969.1| 16S rRNA m(4)C1402 methyltranserfase [Lactobacillus acidophilus
           30SC]
          Length = 315

 Score =  181 bits (459), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 115/312 (36%), Positives = 173/312 (55%), Gaps = 17/312 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77
           H  VLL + I  L P  G + +DATFG GG++R          +I  D+D +A+   +  
Sbjct: 5   HTSVLLHETIDNLKPKNGGLYVDATFGGGGHARYLLSKIDTGTLIGFDQDEYAIKSAKLN 64

Query: 78  MRDYKE-----QFSLFQATFSQLQ-DYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             D  E     +  L    F+ LQ D V      G+DG+ +DLGVSS Q D  DRGFS++
Sbjct: 65  FADLLEPDSEPKLKLVHDNFTNLQRDLVELGYSDGIDGIYYDLGVSSPQFDQADRGFSYR 124

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
            +  LDMRM  S  + A  +VN  + K+L  IL   G+EK + +IAH IV+RR+  P  T
Sbjct: 125 YNARLDMRMDQSQSLDAYQLVNTLSQKELADILYKYGDEKFSRQIAHKIVERRKDKPIVT 184

Query: 188 TQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T +L  +I++ +  +++    HPA +SFQALR+ VN+E++ L   L  A K L+ GG + 
Sbjct: 185 TFELVDIIKEAIPAYARRTGGHPAKKSFQALRVAVNHELDVLQASLEEAIKVLRPGGRIS 244

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           V++F S ED++VKK F   S +V   R M  +P +  P + + + +K +  +  ++  N 
Sbjct: 245 VITFQSHEDKIVKKIFKKYS-EVEVPRGMPFVPDDMKPTL-RLVNRKPITASTSELEKNN 302

Query: 305 RSRSAKLRAGMR 316
           RS SAKLR   +
Sbjct: 303 RSHSAKLRVAEK 314


>gi|257867494|ref|ZP_05647147.1| methyltransferase [Enterococcus casseliflavus EC30]
 gi|257873823|ref|ZP_05653476.1| methyltransferase [Enterococcus casseliflavus EC10]
 gi|257877573|ref|ZP_05657226.1| methyltransferase [Enterococcus casseliflavus EC20]
 gi|257801550|gb|EEV30480.1| methyltransferase [Enterococcus casseliflavus EC30]
 gi|257807987|gb|EEV36809.1| methyltransferase [Enterococcus casseliflavus EC10]
 gi|257811739|gb|EEV40559.1| methyltransferase [Enterococcus casseliflavus EC20]
          Length = 319

 Score =  181 bits (459), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 114/312 (36%), Positives = 173/312 (55%), Gaps = 13/312 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H  V+L++ +  L   P  V +D T G  G+S       S   ++ A D+D  A+   +E
Sbjct: 6   HYTVMLQETVDGLKIRPEGVYVDCTLGGAGHSEYLLSQLSEEGHLFAFDQDQTAIDHAKE 65

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y  K   +  ++ F  L++ +   GV   DG+++DLGVSS Q+D  +RGFS+ +  
Sbjct: 66  RLAPYVAKGMVTFIKSNFRYLKEALHQHGVSRVDGILYDLGVSSPQLDEAERGFSYHQDA 125

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM   + ++A +VVNQ +   L +I    GEEK + +IA  I + RQ  P +TT +
Sbjct: 126 PLDMRMDQTAALTAYEVVNQFDYHQLVKIFFRYGEEKFSKQIAREIERVRQDHPIETTGE 185

Query: 191 LSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I+  +   ++    HPA R FQA+RI VN+E+  + + L  A   L   G + V++
Sbjct: 186 LVDIIKTAIPAPARRKGGHPAKRVFQAIRIAVNDELGVIEESLEQAIHLLAVNGRVSVIT 245

Query: 250 FHSLEDRLVKKFFASRS--GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           FHSLEDR+VK  F   S    +     MIP    P + + IT+K ++PT+E+VA N RSR
Sbjct: 246 FHSLEDRIVKSMFKEYSTPKDMPPGLPMIPEEFQPTL-KLITRKPLLPTEEEVAENNRSR 304

Query: 308 SAKLRAGMRTVE 319
           SAKLR   +  E
Sbjct: 305 SAKLRIAEKIKE 316


>gi|323527438|ref|YP_004229591.1| S-adenosyl-methyltransferase MraW [Burkholderia sp. CCGE1001]
 gi|323384440|gb|ADX56531.1| S-adenosyl-methyltransferase MraW [Burkholderia sp. CCGE1001]
          Length = 313

 Score =  181 bits (459), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 122/311 (39%), Positives = 182/311 (58%), Gaps = 21/311 (6%)

Query: 20  HVPVLLEKVI-ALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
           H  VLLE+ + AL+  A G V +D TFG GG+SR   +  S    +IA D+DP A++  Q
Sbjct: 7   HRTVLLEEAVEALVTRADG-VYVDGTFGRGGHSRLVLEKLSEAGRLIAFDKDPLAIATAQ 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           +       +F +   +F+ L+  +  +G++   GV+ DLGVSS Q+D  +RGFSF+  GP
Sbjct: 66  QIA---DPRFGIVHESFASLRTAIAARGIERVSGVLLDLGVSSPQVDDPERGFSFRADGP 122

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQT 187
           LDMRM  + G SA+D + +A V++LT ++   GEE+ A +IA A+V RR  +    P  +
Sbjct: 123 LDMRMDPTRGESAADWLARATVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLVS 182

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T +L+ ++   V   +  +  PATR+FQA+RI +N E+ EL   L +A   L+ GG L+V
Sbjct: 183 TGELAQIVANVVKTREKGK-DPATRTFQAIRIHINQELAELQVVLEAALALLEQGGRLVV 241

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA--HPAVFQSITKKVVVPTQEDVAFNRR 305
           +SFHSLEDR+VK+F  + +    AV   +P  A   P+    I  +V     E VA N R
Sbjct: 242 ISFHSLEDRIVKRFMQAHA-SAPAVDRRLPIRAVDLPSPPLKIIGRVFASDAE-VAANPR 299

Query: 306 SRSAKLRAGMR 316
           +RSA +R   R
Sbjct: 300 ARSAVMRVAER 310


>gi|322384129|ref|ZP_08057847.1| S-adenosyl-methyltransferase MraW-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321151209|gb|EFX44518.1| S-adenosyl-methyltransferase MraW-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 317

 Score =  181 bits (459), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 107/309 (34%), Positives = 178/309 (57%), Gaps = 17/309 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+ VL E+ +  L+  P  + +D T G  G+S       S    ++ALD+D  A++  Q 
Sbjct: 4   HITVLKEEAVEGLDIKPDGLYVDCTLGGAGHSVRIASQLSKEGLLLALDQDASALANAQN 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVP---------DKGVDGVVFDLGVSSMQIDCGDRGFSF 127
            + +Y+++  + +  F +L+  +             VDG++FDLGVSS Q+D  +RGFS+
Sbjct: 64  VLAEYEDRVRIVKTNFRELKHVLQLEPRTVKNGTPQVDGILFDLGVSSPQLDEAERGFSY 123

Query: 128 QKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
                LDMRM   S ++A  +VN+   +++ RIL + GEEK + +IA +IVK R++   +
Sbjct: 124 NHDAELDMRMDRSSPLTAKTIVNEWAPEEIARILFVYGEEKFSRKIASSIVKARENKTIE 183

Query: 187 TTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           TT +L  +I++ +   ++ +  HPA RSFQALRI VN+E+      L  A + L  GG +
Sbjct: 184 TTGELVEIIKQAIPAAARRSGPHPAKRSFQALRIAVNDELGAFENALEQAIECLAPGGRV 243

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            V++FHSLEDR+ K+ FA   GK        M   N + ++ + + +K +  +++++A+N
Sbjct: 244 AVITFHSLEDRICKQMFAKFVGKCTCPPDFPMCVCN-NKSILKLVNRKPITASEKELAYN 302

Query: 304 RRSRSAKLR 312
            R+RSAKLR
Sbjct: 303 PRARSAKLR 311


>gi|301300385|ref|ZP_07206587.1| S-adenosyl-methyltransferase MraW [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300851987|gb|EFK79669.1| S-adenosyl-methyltransferase MraW [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 314

 Score =  181 bits (459), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 111/305 (36%), Positives = 174/305 (57%), Gaps = 13/305 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYS-RSFCKMGSN--VIALDRDPFAVSCGQE 76
           H+ VLL + +  LN  P    +D T G GG+S     K+  N  + + D+D  A++  ++
Sbjct: 6   HITVLLNEAVDGLNIKPDGTYVDCTLGGGGHSGLILSKLSENGKLYSFDQDITAINFNKD 65

Query: 77  TMRDYKE--QFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
             ++  E  + +  ++ F  + + +  +   GVDG+++DLGVSS Q D  DRGFS+    
Sbjct: 66  KFKEENELGKINFIKSNFRNISEELNKRNILGVDGILYDLGVSSPQFDNADRGFSYNYDA 125

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  S  ++A DVVN  + + L RI    GEEK A  IA  I K RQ  P +TT  
Sbjct: 126 PLDMRMDQSQSLTARDVVNDWSYEQLVRIFFRYGEEKFAKSIARRIEKVRQQTPIETTGQ 185

Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  LI++ +   ++    HPA ++FQA+RI VN+E+  L + L  A   L  GG + V++
Sbjct: 186 LVDLIKEAIPAKARRKGGHPAKKTFQAIRIAVNDELGALEESLEQALDLLNPGGRISVIT 245

Query: 250 FHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           F SLEDRLVK  F  ++   ++     +IP ++    ++ IT+K +VP+++++  N R+ 
Sbjct: 246 FQSLEDRLVKVMFKQKTNLPELPPGLPVIP-DSQKVEYKLITRKPIVPSEDEITHNNRAH 304

Query: 308 SAKLR 312
           SAKLR
Sbjct: 305 SAKLR 309


>gi|254479883|ref|ZP_05093131.1| S-adenosyl-methyltransferase MraW [marine gamma proteobacterium
           HTCC2148]
 gi|214039445|gb|EEB80104.1| S-adenosyl-methyltransferase MraW [marine gamma proteobacterium
           HTCC2148]
          Length = 308

 Score =  181 bits (459), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 116/307 (37%), Positives = 170/307 (55%), Gaps = 23/307 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VLL + +  L  AP    +D TFG GG+SR          +++ +D+DP A  C  +
Sbjct: 5   HQTVLLREAVEALVTAPSGAYVDGTFGRGGHSRFLLDQLDDNGHLLGVDKDPVACECAAQ 64

Query: 77  TMRDYKEQFSLFQATFS----QLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            +     +FS +  +F+    QLQ    D   DG++ DLGVSS Q+D   RGFSF   GP
Sbjct: 65  -LSSADSRFSFYHGSFADLPQQLQLMDID-AFDGILLDLGVSSPQLDEAGRGFSFMSDGP 122

Query: 133 LDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM + SG +A+  ++ A+   +  +L   GEE+ A RIA AIVK R+  P  TT  L
Sbjct: 123 LDMRMDTSSGETAAQWLSYADTTAIAEVLKEYGEERFAKRIAAAIVKAREVEPLTTTAQL 182

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++ +     + ++ HPATR+FQA+RI VN E+E+L   L S+   LK GG L+V+SFH
Sbjct: 183 AKVVSEANPRWERHK-HPATRAFQAIRIKVNRELEDLGDLLASSLDMLKVGGRLVVISFH 241

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK------KVVVPTQEDVAFNRR 305
           SLEDR+VK++      + MA    +P+   P    ++ +      K    +  +V  N R
Sbjct: 242 SLEDRMVKRYM-----RDMARGEQLPAGV-PVTDAALNRRMKLVGKATKASDAEVDENVR 295

Query: 306 SRSAKLR 312
           SRSA +R
Sbjct: 296 SRSAVMR 302


>gi|222151001|ref|YP_002560154.1| S-adenosyl-methyltransferase MraW [Macrococcus caseolyticus
           JCSC5402]
 gi|263456379|sp|B9EB47|RSMH_MACCJ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|222120123|dbj|BAH17458.1| S-adenosyl-methyltransferase MraW [Macrococcus caseolyticus
           JCSC5402]
          Length = 310

 Score =  181 bits (459), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 108/302 (35%), Positives = 168/302 (55%), Gaps = 10/302 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77
           HV VLLE+ +  LN  P  + +D T G  G+S    K     ++I++D+D  A+      
Sbjct: 4   HVTVLLEETVDQLNIDPNGIYVDCTLGGAGHSLYLVKQLQEGHLISIDQDQTAIDNAHII 63

Query: 78  MRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++DY ++ +  +  F  L D   ++  + VDG+++DLGVSS Q+D G+RGFS+ +   LD
Sbjct: 64  LKDYLDKVTFVKDNFRNLSDILAHLDIQKVDGILYDLGVSSPQLDVGERGFSYHQEAKLD 123

Query: 135 MRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM     +SA +VVN    + L  I    GEEK + +IA  I   R+  P +TT +L  
Sbjct: 124 MRMDQTQTLSAYEVVNTWPYEKLVSIFFRYGEEKFSKQIARKIEAERELKPIETTTELVE 183

Query: 194 LIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +I+  +   ++    HPA R FQA+RI VN+E+      +  A  ++K GG + V++FHS
Sbjct: 184 IIKAAIPAPARRTGGHPAKRVFQAIRIAVNDELGAFESSIEQAIDSVKPGGRISVITFHS 243

Query: 253 LEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           LEDRL K+ F   S      R +  +P    P + + IT+K +  + E++  N R+RSAK
Sbjct: 244 LEDRLCKQVFQEYSKGPDIPRGLPVVPPEYQPKL-KKITRKPITSSNEELEHNNRARSAK 302

Query: 311 LR 312
           LR
Sbjct: 303 LR 304


>gi|300112935|ref|YP_003759510.1| S-adenosyl-methyltransferase MraW [Nitrosococcus watsonii C-113]
 gi|299538872|gb|ADJ27189.1| S-adenosyl-methyltransferase MraW [Nitrosococcus watsonii C-113]
          Length = 318

 Score =  181 bits (459), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 118/315 (37%), Positives = 184/315 (58%), Gaps = 15/315 (4%)

Query: 7   KTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIA 63
           K  +S+ H     H PVLL +VI  L      + +D TFG GG++++     S+   ++ 
Sbjct: 3   KNKTSSSHQ----HQPVLLREVIQALAIRRDGIYIDGTFGRGGHAQAILAALSSEGRLLG 58

Query: 64  LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQID 119
           +D+DP A++ G    +    +F++ QA+   L   V ++G    ++G +FDLGVSS Q++
Sbjct: 59  VDKDPAAIAAGHALAQK-DGRFTIVQASIGDLARVVSERGWLRKINGALFDLGVSSPQLE 117

Query: 120 CGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178
             +RGFSF + GPLDMRM+ + G SA++ +  A  K++  +L + GEE+   RIA AI++
Sbjct: 118 NAERGFSFLQDGPLDMRMNPAVGQSAAEWLANAKEKEIAEVLRVYGEERYCRRIARAIIQ 177

Query: 179 RRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
            R       T+ L+ ++ K +      RIHPATRSFQA+RIF+N+E+EEL   L  A  A
Sbjct: 178 ARGLNSLTRTKQLAEVVAKAIP-RWERRIHPATRSFQAIRIFINHELEELRAALEQALAA 236

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297
           L   G L V+SFHSLEDR+VK+FF  ++ G+ + +   +           +  K + P  
Sbjct: 237 LAVKGRLAVISFHSLEDRIVKRFFREKARGEDLPLDLPVMQEDFQQASLKVLGKPIWPVP 296

Query: 298 EDVAFNRRSRSAKLR 312
           E++A N R+RSA+LR
Sbjct: 297 EEIAHNPRARSARLR 311


>gi|297626718|ref|YP_003688481.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296922483|emb|CBL57056.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 342

 Score =  181 bits (459), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 113/306 (36%), Positives = 170/306 (55%), Gaps = 13/306 (4%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74
           HVPV+  +V+ LL+PA   PG V +D T G  G++         + ++ +DRD  A+   
Sbjct: 14  HVPVMAARVVELLSPALDHPGAVYVDGTLGMAGHAELMLTANPQARLVGIDRDHDALDLA 73

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
              +  +  +  L +A F +L   + D G+   D  +FDLG+SS+QID  DRGF+++   
Sbjct: 74  SRRLAPFGARVHLARARFDELGRVLDDAGIATIDAALFDLGLSSLQIDRADRGFAYRVDA 133

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM   S ++A+ V+N+ +  DL R+L   GEEKQA+RI  AIV  R+  PF  +  
Sbjct: 134 PLDMRMDTRSELTAARVLNEYSPGDLVRVLRDYGEEKQATRIVRAIVAEREREPFTDSAR 193

Query: 191 LSSLIQKTVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L  LI + +  +   +   +PA R+FQALRI VN E+E L+  L      +       V+
Sbjct: 194 LVDLILRAIPAAVRTKTKGNPAKRTFQALRIEVNGELEALSTVLPVMLGRMGPAARAAVL 253

Query: 249 SFHSLEDRLVKKFF-ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           ++HSLEDR+VK+ F A+ S    A   ++P     A F  +T+    P   ++A N RS 
Sbjct: 254 AYHSLEDRIVKQVFTAATSDSAPAGLPVVPDEMA-ARFAPLTRGAEKPDAAEIAENPRSA 312

Query: 308 SAKLRA 313
           SA+LRA
Sbjct: 313 SARLRA 318


>gi|148828289|ref|YP_001293042.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae PittGG]
 gi|263456035|sp|A5UIQ3|RSMH_HAEIG RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|148719531|gb|ABR00659.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae PittGG]
          Length = 289

 Score =  181 bits (459), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 111/261 (42%), Positives = 158/261 (60%), Gaps = 20/261 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQE 76
           H+ VLL + +  L      + +D TFG GG+SR    ++ SN  +IA+DRDP A++   E
Sbjct: 12  HITVLLHEAVNGLALKENGIYIDGTFGRGGHSRFILSQLSSNGRLIAVDRDPRAIA---E 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
             +    +F +   +FS + + + DK      +DG++ DLGVSS Q+D  +RGFSF K G
Sbjct: 69  AHKIQDLRFQIEHNSFSHIPE-ICDKLNLVGKIDGILLDLGVSSPQLDEAERGFSFMKDG 127

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP------ 184
           PLDMRM  + G+SA + + Q +++DLT +L   GEE+ A RIA AIV   +SA       
Sbjct: 128 PLDMRMDTTQGLSAEEWLKQVSIEDLTWVLKTFGEERFAKRIATAIVDFNKSAVKNGTEF 187

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
              T  L+ LI + V F K+   HPATRSFQA+RIF+N+E++EL   L SA   L   G 
Sbjct: 188 LSRTSQLAELISQAVPF-KDKHKHPATRSFQAIRIFINSELDELESLLNSALDMLAPEGR 246

Query: 245 LIVVSFHSLEDRLVKKFFASR 265
           L ++SFHSLEDR+VK F  ++
Sbjct: 247 LSIISFHSLEDRMVKHFMKNK 267


>gi|158334035|ref|YP_001515207.1| S-adenosyl-methyltransferase MraW [Acaryochloris marina MBIC11017]
 gi|263433314|sp|B0BYK8|RSMH_ACAM1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|158304276|gb|ABW25893.1| S-adenosyl-methyltransferase MraW, putative [Acaryochloris marina
           MBIC11017]
          Length = 298

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 119/304 (39%), Positives = 171/304 (56%), Gaps = 29/304 (9%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76
           +H+ VL  +++A L      + LDAT G GG+S         + VIALD+D  A+   + 
Sbjct: 9   NHISVLSHELMAGLMLQEQGLYLDATVGGGGHSALILSQYPQTQVIALDQDIQALEAARA 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK-GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
            + D  ++   +Q  FS    Y P +   DG++ DLGVSS Q+D  +RGFSF+    LDM
Sbjct: 69  KLHDACDRIQFWQGNFST---YHPGELRFDGIIADLGVSSAQLDRPERGFSFRYDADLDM 125

Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM  S G++A+DV+N  + +DL  I    GEE+ + RIA  IV +R   P +TT DL+ +
Sbjct: 126 RMDQSQGLTAADVINTYSERDLADIFYHYGEERFSRRIARKIVSKR---PLRTTSDLARV 182

Query: 195 IQKTVYFSKNNR--IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +  ++  +K  R  IHPATR FQALRI VN E++ L + +  A   LK GG + ++SFHS
Sbjct: 183 VASSLPAAKGRRRRIHPATRVFQALRIAVNQELQVLEKFIEIAPTWLKPGGRIGIISFHS 242

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK  F   S                 + Q +TKK +V ++++   N RSRSAKLR
Sbjct: 243 LEDRIVKIHFRQNS-----------------LLQVVTKKPIVASEQEKRENSRSRSAKLR 285

Query: 313 AGMR 316
              R
Sbjct: 286 FAER 289


>gi|153006714|ref|YP_001381039.1| S-adenosyl-methyltransferase MraW [Anaeromyxobacter sp. Fw109-5]
 gi|263446704|sp|A7HH59|RSMH_ANADF RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|152030287|gb|ABS28055.1| S-adenosyl-methyltransferase MraW [Anaeromyxobacter sp. Fw109-5]
          Length = 310

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 122/299 (40%), Positives = 173/299 (57%), Gaps = 5/299 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H  VL  +V+ +L PAPGK++LD T G GG+S    + G+ VI LD+DP A++     + 
Sbjct: 7   HASVLAREVVEVLRPAPGKLLLDGTLGGGGHSELLLERGARVIGLDKDPRALAAATARLA 66

Query: 80  DYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
            + E F   +A F   ++ +      GVDG + DLGVSS Q+D  DRGFSF + GPLDMR
Sbjct: 67  RWGEAFRAVRADFRDAKNVLSALGLTGVDGTLVDLGVSSPQLDQADRGFSFSRPGPLDMR 126

Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
           M   G    D++ + + ++L RIL   GEE  A  IA A+ +  +S     T  L+ ++ 
Sbjct: 127 MGDEGERLEDLLRRIDERELARILREYGEEPFARPIARAVKRAVESDEALDTARLADIVA 186

Query: 197 KTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           K +   +   RIHPATR+FQALRI VN+E+  LA  L      L  GG    +SFHSLED
Sbjct: 187 KAIPRKAWPRRIHPATRTFQALRIAVNDELGALAAWLDGLPATLNVGGRAAAISFHSLED 246

Query: 256 RLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           R+VK+ F + +        + + +    A F +IT+K VV ++ +VA N R+RSAKLRA
Sbjct: 247 RMVKERFRALTQACTCPPDLPVCACGARASFAAITRKAVVASEAEVAENPRARSAKLRA 305


>gi|302380517|ref|ZP_07268982.1| S-adenosyl-methyltransferase MraW [Finegoldia magna ACS-171-V-Col3]
 gi|303234081|ref|ZP_07320730.1| S-adenosyl-methyltransferase MraW [Finegoldia magna BVS033A4]
 gi|302311460|gb|EFK93476.1| S-adenosyl-methyltransferase MraW [Finegoldia magna ACS-171-V-Col3]
 gi|302495006|gb|EFL54763.1| S-adenosyl-methyltransferase MraW [Finegoldia magna BVS033A4]
          Length = 312

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 105/308 (34%), Positives = 169/308 (54%), Gaps = 9/308 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           HVP+LL + I  LN   GK+ +D T G  G+SR   K   N  +I  D+D  A+   ++ 
Sbjct: 5   HVPILLNECIENLNIRDGKIYVDCTVGGAGHSREIAKRIGNGKLICFDQDEDALKVAKQR 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           + ++ ++    +  F  +++ + + G   VDG++ D+GVSS QID   RGFS+     LD
Sbjct: 65  LEEFGDKIIFIKDNFKNIKNDLHNLGIEKVDGILMDIGVSSYQIDEDSRGFSYMHDADLD 124

Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM  S  ISA D+VN  + +DL  ++    +EK A RIA  I   R++ P  TT +L  
Sbjct: 125 MRMDQSNPISAKDIVNTYSKEDLENVIFKYSDEKWAKRIAEFICNARETKPINTTFELVE 184

Query: 194 LIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           +I+K +      N + H A ++FQA+RI VN E++ L Q +  +   L   G + +++FH
Sbjct: 185 VIEKAIPKKVRVNQKGHSAKKTFQAIRIEVNKELDVLEQAVGDSIDLLNPEGRICIITFH 244

Query: 252 SLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLED++ K  F  R  G +      +    H    + IT+K + P+++++  N R+RSAK
Sbjct: 245 SLEDKICKDIFRQRQKGCICPPEIPVCVCNHKPEIKIITRKPIEPSKDELMQNSRARSAK 304

Query: 311 LRAGMRTV 318
           LR   + +
Sbjct: 305 LRVAEKII 312


>gi|104773820|ref|YP_618800.1| S-adenosyl-methyltransferase MraW [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|122983974|sp|Q1GAU0|RSMH_LACDA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263460423|sp|Q04B77|RSMH_LACDB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|103422901|emb|CAI97563.1| S-adenosyl-methyltransferase MraW [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|325125484|gb|ADY84814.1| S-adenosyl-methyltransferase mraW [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 314

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 113/307 (36%), Positives = 172/307 (56%), Gaps = 16/307 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77
           H  VLL + I  L P  G   +DATFG GG++R   +     N+I  D+D +A+   Q  
Sbjct: 5   HTSVLLHETIDNLAPQSGGTYVDATFGGGGHARYLLRKLDKGNLIGFDQDQYAIDTAQSN 64

Query: 78  M-----RDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
                  D + +  L    FS L++ +      G+DG+ +DLGVSS Q+D  +RGFS++ 
Sbjct: 65  FAAFLKEDSQPRLQLVHNNFSHLKEELAKLGISGIDGIYYDLGVSSPQLDQAERGFSYRF 124

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
              LDMRM  S    A  +VNQ + K L  +L   G+EK + +IA  IV+RR+  P +TT
Sbjct: 125 DARLDMRMDQSQDFDAYQLVNQYDQKQLADVLYRYGDEKFSRQIARKIVERRRGKPIETT 184

Query: 189 QDLSSLIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L  +I++ +  +   R  HPA +SFQA+R+ VN+E++ L   L  A   L  GG + V
Sbjct: 185 FELVEIIKEAIPAAARRRGGHPAKKSFQAIRVEVNHELDVLRASLEEAISLLNPGGRISV 244

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           ++F SLED++VK+ F   S +V   R M  +P    P + + + +K +  ++E++A N R
Sbjct: 245 ITFQSLEDKIVKQTFKKYS-EVEIPRGMPVVPEGIKPTL-RLVNRKSITASEEELAENNR 302

Query: 306 SRSAKLR 312
           S SAKLR
Sbjct: 303 SHSAKLR 309


>gi|300854240|ref|YP_003779224.1| putative S-adenosyl-methyltransferase [Clostridium ljungdahlii DSM
           13528]
 gi|300434355|gb|ADK14122.1| predicted S-adenosyl-methyltransferase [Clostridium ljungdahlii DSM
           13528]
          Length = 309

 Score =  181 bits (458), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 107/305 (35%), Positives = 167/305 (54%), Gaps = 9/305 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           HVPVLL + I  LN     + +D T G GG+S    K  S+   +I +D D  A++  +E
Sbjct: 5   HVPVLLNETINSLNIKEDGIYVDCTLGGGGHSFEILKRLSDKGRLIGIDEDTSAINATRE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + ++K   +     F  + + + +     VDG++ DLGVSS Q+D  +RGFS+ K  PL
Sbjct: 65  RLNEFK-NITYVHNNFYYIDEILEELKIDKVDGILMDLGVSSYQLDESERGFSYMKDAPL 123

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  S +SA +V+N  + ++L  ++   GEE  + RIA  IV  R+ AP QTT  L 
Sbjct: 124 DMRMNRDSSLSAYEVINNYSEENLYNVIRDYGEENFSKRIAKFIVAEREKAPIQTTLQLV 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I+  +        HPA R+FQA+RI VN E++ L + +  + K L  GG + +++FHS
Sbjct: 184 DIIRNAIPARFQKEGHPAKRTFQAIRIEVNGELKILNKAVEDSVKRLNTGGRISIITFHS 243

Query: 253 LEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR++K  F              +       + + I KK ++PT+E+   N RS+S+KL
Sbjct: 244 LEDRIIKTKFKKLENPCTCPPDFPLCVCGKKPIVKIINKKPIIPTKEEKEKNSRSKSSKL 303

Query: 312 RAGMR 316
           R   +
Sbjct: 304 RTAEK 308


>gi|291615182|ref|YP_003525339.1| S-adenosyl-methyltransferase MraW [Sideroxydans lithotrophicus
           ES-1]
 gi|291585294|gb|ADE12952.1| S-adenosyl-methyltransferase MraW [Sideroxydans lithotrophicus
           ES-1]
          Length = 308

 Score =  181 bits (458), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 121/310 (39%), Positives = 171/310 (55%), Gaps = 22/310 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQE 76
           H  VLL + +  L      + +D TFG GG+SR    K+G    ++ALD+DP AV+  +E
Sbjct: 7   HATVLLNEAVEALRVKADGIYVDCTFGRGGHSRLILEKLGERGRLVALDKDPMAVAAARE 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +F L  + F  L + +   G   VDGV+ DLGVSS Q+D   RGFSF+   PL
Sbjct: 67  I---GDARFQLQHSGFEHLGEVLRGLGIEKVDGVLLDLGVSSPQLDDESRGFSFRFDAPL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  S G +A++ +  A+  +L  ++   GEE+ A +IA AIV  RQ     TT+ LS
Sbjct: 124 DMRMDTSRGQTAAEWLATADEGELAEVIRDYGEERFARQIARAIVAARQERAILTTKQLS 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            ++ + V   +  + +PATR+FQA+RI++N E+EEL   L      LKAGG + V+SFHS
Sbjct: 184 DIVAQCVRTREPGK-NPATRTFQAVRIYINRELEELESVLPQCVDHLKAGGRMAVISFHS 242

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAH------PAVFQSITKKVVVPTQEDVAFNRRS 306
           LEDR+VK F      + MA    +P N        P     +  K +  + E+VA N R+
Sbjct: 243 LEDRMVKHFM-----RDMAQGDKLPKNVPIRAVDVPQGKMRLAGKPIYASAEEVAANPRA 297

Query: 307 RSAKLRAGMR 316
           RSA LR   R
Sbjct: 298 RSAVLRVAER 307


>gi|312880226|ref|ZP_07740026.1| S-adenosyl-methyltransferase MraW [Aminomonas paucivorans DSM
           12260]
 gi|310783517|gb|EFQ23915.1| S-adenosyl-methyltransferase MraW [Aminomonas paucivorans DSM
           12260]
          Length = 324

 Score =  181 bits (458), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 113/310 (36%), Positives = 170/310 (54%), Gaps = 35/310 (11%)

Query: 20  HVPVLLEKVIALLNPAPGKV-ILDATFGAGGYSRSF------CKMGSNVIALDRDPFAVS 72
           HVPV+L++V+  L P   +V ++D T GA G++R+       C++    + +D+DP A+ 
Sbjct: 4   HVPVMLQEVLEALRPWEEQVCVVDGTLGAAGHARAILANCPRCRL----VGIDQDPSALD 59

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
             +  +  Y ++ +L    F  L   +P    K     +FDLGVSSMQID  +RGFSF  
Sbjct: 60  EARLNLAPYGDRVTLIPGNFRDLSTLLPRYEIKVCSAFLFDLGVSSMQIDREERGFSFHG 119

Query: 130 SGPLDMRMSCS----GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-AP 184
            GPLDMRM       G++A+D+VN   + DL  +    GE+  A  IA AIV  R+   P
Sbjct: 120 EGPLDMRMDSGTLSRGVTAADIVNSWELGDLIGLFRRYGEDPFAVPIARAIVMHRERYGP 179

Query: 185 FQTTQDLSSLIQKTVYFSKNNR--IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
             TT+ L +LI++T+      +   HPA R FQALRI VN+E+E L + L S        
Sbjct: 180 LMTTESLVALIRRTLPAPAQRKAGTHPARRIFQALRIAVNDEMEALRETLESLPSFCGDP 239

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
             ++ +++HSLEDRLVK+   + + +   +               +TKK +VP +E++  
Sbjct: 240 STVVFITYHSLEDRLVKQHMKTWAAEGKGL--------------LVTKKPLVPREEEIRE 285

Query: 303 NRRSRSAKLR 312
           N+RSRSAKLR
Sbjct: 286 NKRSRSAKLR 295


>gi|212715550|ref|ZP_03323678.1| hypothetical protein BIFCAT_00448 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660917|gb|EEB21492.1| hypothetical protein BIFCAT_00448 [Bifidobacterium catenulatum DSM
           16992]
          Length = 343

 Score =  181 bits (458), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 114/306 (37%), Positives = 167/306 (54%), Gaps = 13/306 (4%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74
           H PVLL   + L+ PA   PG + +D T G  G+S +F K    + +I +DRD  A++  
Sbjct: 8   HQPVLLRDCVDLVAPALANPGSIAVDCTLGLAGHSTAFLKASPHARLIGIDRDTEALALA 67

Query: 75  QETMR--DYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQK 129
            + M+     ++F    A F      + D+G+D    V  DLG+SS+QID  +RGFS+  
Sbjct: 68  TQRMQMEGLADRFIPVHAAFDDFAQVLDDQGIDQVNAVFMDLGLSSLQIDETERGFSYSH 127

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM  +  ++A  V+   +  DL RI    GEE+ + +IA AIV+RR+  P  T+
Sbjct: 128 DAPLDMRMDVTQPLTAEQVLADYSFADLARIFRTYGEERFSKQIARAIVRRREIEPLTTS 187

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ L+ + V  +     +PA R FQALRI VN E+++LA  L      L  GG L+V 
Sbjct: 188 GQLNRLVDEVVPQAHRPAGNPAKRVFQALRIEVNGELDKLAGTLPQIANHLAVGGRLVVE 247

Query: 249 SFHSLEDRLVKKFF-ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           S+HSLED+ VK F        V A   +IP +  P  F+ +T+  +    E++A N RS 
Sbjct: 248 SYHSLEDKTVKTFMNQGLKADVPADMPVIPPDMMP-FFKELTRGAIKAGDEEIAMNPRSA 306

Query: 308 SAKLRA 313
           S +LRA
Sbjct: 307 SVRLRA 312


>gi|239623438|ref|ZP_04666469.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239521469|gb|EEQ61335.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 315

 Score =  181 bits (458), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 103/302 (34%), Positives = 174/302 (57%), Gaps = 10/302 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN-VIALDRDPFAVSCGQET 77
           H  VLL + +  LN  PG + +D T G GG++   CK +GS  +I +D+D  A+      
Sbjct: 8   HKSVLLYETVGSLNIKPGGIYVDGTLGGGGHAYEVCKRLGSGRLIGIDQDADAIEAAGRR 67

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +  +K++ ++ ++ +  ++  + + G   VDG+  DLGVSS Q+D   RGF++++  PLD
Sbjct: 68  LEHFKDKVTIVRSNYENIRTVLNELGLLKVDGIYLDLGVSSYQLDTASRGFTYREDAPLD 127

Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM   +  +A+D+VN     +L RI+   GE+  A  IA  IV+ R   P +TT +L+ 
Sbjct: 128 MRMDQRNTTTAADIVNTYTEMELYRIIRDYGEDNFAKNIAKHIVRARGEHPIETTGELAE 187

Query: 194 LIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +I+  +    +    HPA R+FQA+RI  N+E++ L Q + +  + L  GG L +++FHS
Sbjct: 188 IIKAAIPARVRATGGHPAKRTFQAIRIECNHELDVLEQSIDTMIELLNPGGRLSIITFHS 247

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           LEDR+VK  F +     +   H  P       +  + +++K ++P++E++  N RS+SAK
Sbjct: 248 LEDRIVKNRFRTNENPCICP-HEFPVCVCGRKSKGKVVSRKPILPSKEELEENSRSKSAK 306

Query: 311 LR 312
           LR
Sbjct: 307 LR 308


>gi|167461086|ref|ZP_02326175.1| hypothetical protein Plarl_00698 [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 317

 Score =  181 bits (458), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 107/309 (34%), Positives = 177/309 (57%), Gaps = 17/309 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+ VL E+ +  L+  P  + +D T G  G+S       S    ++ALD+D  A++  Q 
Sbjct: 4   HITVLKEEAVEGLDIKPDGLYVDCTLGGAGHSVRIASQLSKEGLLLALDQDASALANAQN 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVP---------DKGVDGVVFDLGVSSMQIDCGDRGFSF 127
            + +Y+++  + +  F +L+  +             VDG++FDLGVSS Q+D  +RGFS+
Sbjct: 64  VLAEYEDRVRIVKTNFRELKHVLQLEPRTVKNGTPQVDGILFDLGVSSPQLDEAERGFSY 123

Query: 128 QKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
                LDMRM   S ++A  +VN+   +++ RIL + GEEK + +IA +IVK R++   +
Sbjct: 124 NHDAELDMRMDRSSPLTAKTIVNEWAPEEIARILFVYGEEKFSRKIASSIVKARENKTIE 183

Query: 187 TTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           TT +L  +I++ +   ++ +  HPA RSFQALRI VN+E+      L  A + L  GG +
Sbjct: 184 TTGELVEIIKQAIPAAARRSGPHPAKRSFQALRIAVNDELGAFENALEQAIECLAPGGRV 243

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            V++FHSLEDR+ K+ FA   GK        M   N +  + + + +K +  +++++A+N
Sbjct: 244 AVITFHSLEDRICKQMFAKFVGKCTCPPDFPMCVCN-NKGILKLVNRKPITASEKELAYN 302

Query: 304 RRSRSAKLR 312
            R+RSAKLR
Sbjct: 303 PRARSAKLR 311


>gi|327441162|dbj|BAK17527.1| predicted S-adenosylmethionine-dependent methyltransferase
           [Solibacillus silvestris StLB046]
          Length = 316

 Score =  181 bits (458), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 111/304 (36%), Positives = 171/304 (56%), Gaps = 11/304 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
           DH  VLL++ +  LN  P  + +D T G  G+S    +  S    +I  D+D  A+   +
Sbjct: 3   DHTTVLLKETVDGLNINPDGIYVDCTLGGAGHSEYLVQQLSEKGRLICFDQDTTAIENAK 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             + DY ++     + F  L++ +    +   DG+++DLGVSS Q+D  +RGFS+    P
Sbjct: 63  VRLADYLDRVIFVHSNFRYLKEELHKLNIHQIDGILYDLGVSSPQLDTPERGFSYHHDAP 122

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  +  +SA  VVN+ + ++L RI    GEEK + ++A  I + R+ AP +TT  L
Sbjct: 123 LDMRMDQTAELSAYHVVNEWSYENLVRIFFRYGEEKFSKQVARKIEQAREIAPVETTGQL 182

Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             LI+  +   ++    HPA R FQA+RI VN+E+      L  A   LK GG + V++F
Sbjct: 183 VELIKDGIPAPARRKGGHPAKRIFQAIRIAVNDELGAAEDSLVDAIDLLKIGGRISVITF 242

Query: 251 HSLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           HSLEDRL K  F  AS    +     +IP +  P + + +++K ++P+ E++A N RSRS
Sbjct: 243 HSLEDRLTKTLFKEASSLPDLPPGLPVIPEHMKP-ILKLVSRKPILPSDEELAANNRSRS 301

Query: 309 AKLR 312
           AKLR
Sbjct: 302 AKLR 305


>gi|119505128|ref|ZP_01627204.1| S-adenosyl-methyltransferase [marine gamma proteobacterium
           HTCC2080]
 gi|119459110|gb|EAW40209.1| S-adenosyl-methyltransferase [marine gamma proteobacterium
           HTCC2080]
          Length = 307

 Score =  181 bits (458), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 122/308 (39%), Positives = 175/308 (56%), Gaps = 14/308 (4%)

Query: 18  GDHVPVLLEKVI-ALLNPAPG---KVILDATFGAGGYSRSFCKM---GSNVIALDRDPFA 70
           G H  VLLE+ + AL+  A G   +V +D TFG GG+S +  ++   G  ++A D+DP A
Sbjct: 3   GMHQAVLLEEAVEALMAGAGGTGSEVYVDGTFGRGGHSAAILRVLSDGQRLVAFDKDPEA 62

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           +   +  +      FS    +F  L+      G+ GV+ DLGVSS Q+D G RGFSFQ+ 
Sbjct: 63  MESAR-LLSSENPAFSFLHDSFGNLER--AGSGLAGVLLDLGVSSPQLDDGSRGFSFQQQ 119

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
           GPLDMRM  S G +A++ +N A+  DL R+L   GEEK A RI  A+VKRR   PF+ T+
Sbjct: 120 GPLDMRMDNSKGETAAEFINSASEADLRRVLWDFGEEKFARRIVSALVKRRMVEPFERTE 179

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           DL++++       + ++ HPATR+FQALRI VN E+ +L   L      L  GG L+V+S
Sbjct: 180 DLAAVVAAANPAWEKHK-HPATRTFQALRIHVNRELADLDILLGKVIDLLAVGGRLVVIS 238

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR VK F   R  +   +   +P  +        +  K    + +++A N R+RS
Sbjct: 239 FHSLEDRRVKTFM-RREARGRELPRGVPIRDDERGERLRLLGKPRRASDDELAANPRARS 297

Query: 309 AKLRAGMR 316
           A +R   R
Sbjct: 298 AIMRVAER 305


>gi|89902202|ref|YP_524673.1| S-adenosyl-methyltransferase MraW [Rhodoferax ferrireducens T118]
 gi|122996777|sp|Q21SW1|RSMH_RHOFD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|89346939|gb|ABD71142.1| methyltransferase [Rhodoferax ferrireducens T118]
          Length = 309

 Score =  181 bits (458), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 129/313 (41%), Positives = 174/313 (55%), Gaps = 23/313 (7%)

Query: 20  HVPVLLEKVIALL--NP-------APG-KVILDATFGAGGYSR---SFCKMGSNVIALDR 66
           H  VLL + +  L  NP       A G +V +DATFG GG+SR   S       +IA D+
Sbjct: 3   HTTVLLNEAVDALFCNPDATADASATGAQVYVDATFGRGGHSRLILSRMTPTDRLIAFDK 62

Query: 67  DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126
           D  A+    E    +  +FS+    FS L D +P   V GV+ DLG+SS QID   RGFS
Sbjct: 63  DAEALV---EAGNIHDSRFSIRHQGFSHL-DELPPASVAGVLLDLGISSPQIDNPARGFS 118

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-AP 184
           F+  GPLDMRM  + GIS +  +  A  + +  ++   GEE+ A  IA AIV RRQ   P
Sbjct: 119 FRFEGPLDMRMDTTRGISVAQWLANAETEKIAEVIRDYGEERFAGPIAKAIVARRQERGP 178

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
             +T +L+ L+  TV   +  + +PATR+FQA RIF+N E+EEL Q L ++   L  GG 
Sbjct: 179 ISSTTELAQLVADTVKTREPGQ-NPATRTFQAFRIFINAELEELQQALAASLLVLAPGGR 237

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           L+V+SFHSLEDR+VK+F A  S  V   R      A P V Q      + P+  +V+ N 
Sbjct: 238 LVVISFHSLEDRIVKQFIAQHSRDVYDRRAPF---APPKVMQLKALARLRPSAAEVSANP 294

Query: 305 RSRSAKLRAGMRT 317
           R+RSA +R   RT
Sbjct: 295 RARSAIMRVAQRT 307


>gi|325571379|ref|ZP_08146879.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Enterococcus casseliflavus ATCC 12755]
 gi|325155855|gb|EGC68051.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Enterococcus casseliflavus ATCC 12755]
          Length = 331

 Score =  181 bits (458), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 118/331 (35%), Positives = 181/331 (54%), Gaps = 19/331 (5%)

Query: 1   MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS- 59
           ++ K  K M+   H+T      V+L++ +  L+  P  V +D T G  G+S       S 
Sbjct: 5   LDRKRKKHMADFQHYT------VMLQETVDGLSIRPEGVYVDCTLGGAGHSEYLLSQLSE 58

Query: 60  --NVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLG 112
             ++ A D+D  A+   +E +  Y  K   +  ++ F  L++ +   GV   DG+++DLG
Sbjct: 59  EGHLFAFDQDQTAIDHAKERLAPYVAKGMVTFIKSNFRYLKEALNQHGVSRVDGILYDLG 118

Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASR 171
           VSS Q+D  +RGFS+ +  PLDMRM   + ++A +VVNQ +   L +I    GEEK + +
Sbjct: 119 VSSPQLDEAERGFSYHQDAPLDMRMDQTAALTAYEVVNQFDYHQLVKIFFRYGEEKFSKQ 178

Query: 172 IAHAIVKRRQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQ 230
           IA  I + RQ  P +TT +L  +I+  +   ++    HPA R FQA+RI VN+E+  +  
Sbjct: 179 IAREIERVRQDHPIETTGELVDIIKTAIPAPARRKGGHPAKRVFQAIRIAVNDELGVIED 238

Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRS--GKVMAVRHMIPSNAHPAVFQSI 288
            L  A   L   G + V++FHSLEDR+VK  F   S    +     MIP    P + + I
Sbjct: 239 SLEQAIHLLAVNGRVSVITFHSLEDRIVKSMFKEYSTPKDMPPGLPMIPEEFQPTL-KLI 297

Query: 289 TKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319
           T+K ++PT+E+VA N RSRSAKLR   +  E
Sbjct: 298 TRKPLLPTEEEVAENNRSRSAKLRIAEKIKE 328


>gi|258546144|ref|ZP_05706378.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Cardiobacterium hominis ATCC 15826]
 gi|258518569|gb|EEV87428.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Cardiobacterium hominis ATCC 15826]
          Length = 305

 Score =  181 bits (458), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 123/310 (39%), Positives = 173/310 (55%), Gaps = 22/310 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMG--SNVIALDRDPFAVSCGQE 76
           HV VLL + +  L      V LD TFG GG+SR+    +G    + ALDRDP A      
Sbjct: 4   HVTVLLHEAVQALAIRADGVYLDGTFGRGGHSRAMLAALGRAGRLYALDRDPQAAEAAAG 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +F   +  FS+++    D G   +DG++ DLGVSS Q+D   RGFSF K GPL
Sbjct: 64  I---DDPRFHFARCPFSRMETAFADVGAASLDGILLDLGVSSPQLDQAARGFSFGKEGPL 120

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQ--ASRIAHAIVKRRQSAPFQTTQD 190
           DMRM   SGI+A+D +   +   L R++   G E    A RIA A++  R     +TT D
Sbjct: 121 DMRMDNESGITAADWLAATDEATLARVIRDWGGEPHTVARRIARAVIAARGK--LRTTLD 178

Query: 191 LSSLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L++++   V     K    HPAT++FQA+RI VN+E+ E+ +GL +A + LK+GG+L V+
Sbjct: 179 LAAVVADAVPRKLYKAG-FHPATQTFQAIRIAVNDEVGEIERGLAAATRLLKSGGVLAVI 237

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRS 306
           +FH LED LVK+F  +  G  +     IPS AH  V     +    V P+  +VA N RS
Sbjct: 238 TFHGLEDALVKRFIRAHEGAPLPAE--IPS-AHDRVNPLLRLVPPAVKPSAREVADNPRS 294

Query: 307 RSAKLRAGMR 316
           RSA+LR  ++
Sbjct: 295 RSARLRKAVK 304


>gi|170700174|ref|ZP_02891192.1| S-adenosyl-methyltransferase MraW [Burkholderia ambifaria IOP40-10]
 gi|172059541|ref|YP_001807193.1| S-adenosyl-methyltransferase MraW [Burkholderia ambifaria MC40-6]
 gi|263446887|sp|B1YSR6|RSMH_BURA4 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|170134906|gb|EDT03216.1| S-adenosyl-methyltransferase MraW [Burkholderia ambifaria IOP40-10]
 gi|171992058|gb|ACB62977.1| S-adenosyl-methyltransferase MraW [Burkholderia ambifaria MC40-6]
          Length = 313

 Score =  181 bits (458), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 117/312 (37%), Positives = 180/312 (57%), Gaps = 21/312 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  + +D TFG GG+SR+          +IA D+DP A+   Q 
Sbjct: 7   HRTVLLDEAVESLVTRPDGIYVDGTFGRGGHSRAVLARLAEAGRLIAFDKDPRAIETAQ- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             R    +FS+   +F+ ++D +  +G++   GV+ DLGVSS Q+D   RGFSF+  GPL
Sbjct: 66  --RIEDARFSIVHDSFASMRDALAARGIEKVSGVLLDLGVSSPQVDDPARGFSFRADGPL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTT 188
           DMRM  + G SA++ + +A+V++LT ++   GEE+ A +IA A+V RR  +    P  TT
Sbjct: 124 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDTT 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ ++   V   +  +  PATR+FQA+RI VN E+ +L   L +A   L+ GG L+V+
Sbjct: 184 GELAQIVGHVVKTREKGK-DPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVI 242

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNRR 305
           SFHSLEDR+VK+F  + +    AV   +P  A      S   K++    P++ +V  N R
Sbjct: 243 SFHSLEDRIVKRFMQAHA-SAPAVDRRLPIRA--VDLPSPPLKIISRQFPSEAEVVANPR 299

Query: 306 SRSAKLRAGMRT 317
           +RSA +R   R 
Sbjct: 300 ARSAVMRIAERV 311


>gi|71894357|ref|YP_278465.1| S-adenosyl-methyltransferase [Mycoplasma synoviae 53]
 gi|88909204|sp|Q4A667|RSMH_MYCS5 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|71851145|gb|AAZ43754.1| S-adenosyl-methyltransferase [Mycoplasma synoviae 53]
          Length = 301

 Score =  181 bits (458), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 111/302 (36%), Positives = 171/302 (56%), Gaps = 17/302 (5%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQ 75
            +H+PVLL +V+  L      + +D T G GG+S+   K      +IA D+D FA+    
Sbjct: 3   NNHIPVLLNEVLDNLALKENGIYIDLTLGMGGHSKEILKRIPKGKLIAFDKDDFAIKNAS 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           +T+ +    F + ++ F   ++ + + G   VDG++ DLG+SS QID  +RGFS+ K+  
Sbjct: 63  KTLSEVANNFEIIKSDFKDFKEELSNLGIYKVDGILADLGISSPQIDNAERGFSYLKNSA 122

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S  +SA DVVN   V+ L  IL   GE K    IA  I++ R   P  TT +L
Sbjct: 123 LDMRMDQSQKLSAYDVVNLYPVEKLEYILKTYGEVKNYKYIASKIIEAR---PINTTLEL 179

Query: 192 SSLIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           ++LI K+V   K  ++ +PA   FQA+RI VNNE++ + Q L S E  LK    L+++SF
Sbjct: 180 ANLI-KSVTPQKLLKLKNPAKNVFQAIRIEVNNELDSIHQMLSSVEDLLKVNASLLIISF 238

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLED++VK +F   +      +  +PS       +    + + P+++++  N RS+SAK
Sbjct: 239 HSLEDKIVKNYFQELT------KPKLPSKMPIQEDKFFATRRIYPSKQELNLNSRSKSAK 292

Query: 311 LR 312
           LR
Sbjct: 293 LR 294


>gi|257899142|ref|ZP_05678795.1| methyltransferase [Enterococcus faecium Com15]
 gi|293571737|ref|ZP_06682756.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium E980]
 gi|257837054|gb|EEV62128.1| methyltransferase [Enterococcus faecium Com15]
 gi|291608194|gb|EFF37497.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium E980]
          Length = 319

 Score =  181 bits (458), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 115/306 (37%), Positives = 177/306 (57%), Gaps = 16/306 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H  V+L++ +  LN  P  V +D T G  G+S       S   ++ A D+D  A+   + 
Sbjct: 7   HYTVMLKETVDGLNIKPDGVYVDCTLGGAGHSEYLLSQLSSKGHLYAFDQDQKAIDHAKL 66

Query: 77  TMRDYKEQ--FSLFQATFSQLQD----YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +  Y EQ   +  +A F +L++    YV DK VDG+++DLGVSS Q+D  +RGFS+ + 
Sbjct: 67  RLASYVEQGMVTFIKANFRELEERLSEYV-DK-VDGILYDLGVSSPQLDEAERGFSYHQD 124

Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM  S  ++A  V+N+ +  +L +I    GEEK + +IA  I + R++ P QTT 
Sbjct: 125 APLDMRMDQSAPLTAYHVINEYSYHELVKIFFRYGEEKFSKQIAREIERVRKTKPIQTTG 184

Query: 190 DLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I++ +   ++    HPA R FQA+RI VN+E+      L  A + LK  G + V+
Sbjct: 185 ELVEIIKQVIPAPARRKGGHPAKRIFQAVRIAVNDELGAEEASLEQAIRLLKVNGRISVI 244

Query: 249 SFHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           +FHSLEDR+VK  F   S    +     +IP    P + + IT+K ++P++E++A N RS
Sbjct: 245 TFHSLEDRIVKSMFKEYSTVQDLPPGLPVIPDEFQPEL-KVITRKPILPSEEELAENNRS 303

Query: 307 RSAKLR 312
           RSAKLR
Sbjct: 304 RSAKLR 309


>gi|227891048|ref|ZP_04008853.1| S-adenosyl-methyltransferase [Lactobacillus salivarius ATCC 11741]
 gi|227867137|gb|EEJ74558.1| S-adenosyl-methyltransferase [Lactobacillus salivarius ATCC 11741]
          Length = 323

 Score =  181 bits (458), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 111/305 (36%), Positives = 174/305 (57%), Gaps = 13/305 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYS-RSFCKMGSN--VIALDRDPFAVSCGQE 76
           H+ VLL + +  LN  P    +D T G GG+S     K+  N  + + D+D  A++  ++
Sbjct: 15  HITVLLNEAVDGLNIKPDGTYVDCTLGGGGHSGLILSKLSENGKLYSFDQDITAINFNKD 74

Query: 77  TMRDYKE--QFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
             ++  E  + +  ++ F  + + +  +   GVDG+++DLGVSS Q D  DRGFS+    
Sbjct: 75  KFKEENELGKINFIKSNFRNISEELNKRNILGVDGILYDLGVSSPQFDNADRGFSYNYDA 134

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  S  ++A DVVN  + + L RI    GEEK A  IA  I K RQ  P +TT  
Sbjct: 135 PLDMRMDQSQSLTARDVVNDWSYEQLVRIFFRYGEEKFAKSIARRIEKVRQQTPIETTGQ 194

Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  LI++ +   ++    HPA ++FQA+RI VN+E+  L + L  A   L  GG + V++
Sbjct: 195 LVDLIKEAIPAKARRKGGHPAKKTFQAIRIAVNDELGALEESLEQALDLLNPGGRISVIT 254

Query: 250 FHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           F SLEDRLVK  F  ++   ++     +IP ++    ++ IT+K +VP+++++  N R+ 
Sbjct: 255 FQSLEDRLVKVMFKQKTSLPELPPGLPVIP-DSQKVEYKLITRKPIVPSEDEITHNNRAH 313

Query: 308 SAKLR 312
           SAKLR
Sbjct: 314 SAKLR 318


>gi|227893331|ref|ZP_04011136.1| S-adenosyl-methyltransferase [Lactobacillus ultunensis DSM 16047]
 gi|227864746|gb|EEJ72167.1| S-adenosyl-methyltransferase [Lactobacillus ultunensis DSM 16047]
          Length = 330

 Score =  181 bits (458), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 115/308 (37%), Positives = 174/308 (56%), Gaps = 17/308 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGS-NVIALDRDPFAVSCGQET 77
           H  VLL + I  L P  G + +DATFG GG++R    K+ S  ++  D+D +A+   +  
Sbjct: 20  HTSVLLHETIDNLKPKDGGLYVDATFGGGGHARYLLSKIDSGTLVGFDQDEYAIKSAKLN 79

Query: 78  MRDYKE-----QFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             D  E     +  L    FS LQ+ + +     G+DG+ +DLGVSS Q D  DRGFS++
Sbjct: 80  FADLLEPDSEPKLKLVHDNFSNLQNDLVELGYTDGIDGIYYDLGVSSPQFDQADRGFSYR 139

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
            +  LDMRM  S  + A  +VN  + K+L  IL   G+EK + +IAH I++RR+  P  T
Sbjct: 140 YNARLDMRMDQSQDLDAYQLVNDLSQKELADILYQYGDEKFSRQIAHRIIERRKDKPIVT 199

Query: 188 TQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T +L  +I+  +  +++    HPA +SFQALR+ VN E++ L   L  A K L+ GG + 
Sbjct: 200 TFELVDIIKDAIPAYARRTGGHPAKKSFQALRVAVNRELDVLQASLEEAIKILRPGGRIS 259

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           V++F S ED++VKK F   S +V   R M  +P +  P +   + +K +  +  ++  N 
Sbjct: 260 VITFQSHEDKIVKKIFKKYS-EVEIPRGMPFVPDDLKP-MLCLVNRKPITASTSELENNN 317

Query: 305 RSRSAKLR 312
           RSRSAKLR
Sbjct: 318 RSRSAKLR 325


>gi|260655421|ref|ZP_05860909.1| S-adenosyl-methyltransferase MraW [Jonquetella anthropi E3_33 E1]
 gi|260629869|gb|EEX48063.1| S-adenosyl-methyltransferase MraW [Jonquetella anthropi E3_33 E1]
          Length = 303

 Score =  181 bits (458), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 111/308 (36%), Positives = 172/308 (55%), Gaps = 22/308 (7%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDY 81
           +L++V+      P  +++DAT G GGYS +F        V  +D+D  A +  QE +  +
Sbjct: 1   MLQEVMDSFPRPPVGLVVDATLGLGGYSEAFLSRWPECRVAGIDQDGQARAIAQERLARW 60

Query: 82  KEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138
            ++F+++   F +L D +   G     GVV DLGVS++QI  G+RGFSF++ GPLDMRM+
Sbjct: 61  ADRFAVWPGNFRRLNDLMASHGEKEAAGVVVDLGVSNLQITEGERGFSFREDGPLDMRMN 120

Query: 139 CS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK 197
            S G++AS +VNQ    +L  I    GEE+ A  IA AI +RR  +  +TT  L  +I++
Sbjct: 121 ASEGLTASQLVNQMTEDELAGIFFRYGEERFARSIARAIARRRGQSSIETTGQLVEVIRE 180

Query: 198 TVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
            +  +   +   HPA R FQALRI VN+E+  L   L      L  GG+ + V++HSLED
Sbjct: 181 GMPAAAQRKANGHPARRVFQALRIAVNDELGALEDLLSQVCGLLADGGVFVAVTYHSLED 240

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           RLVK+      G+ + +               ++++ + P++++V  N +SRSA+LRA  
Sbjct: 241 RLVKRAMREWEGQWLGI--------------PVSRRGLTPSEDEVLSNPKSRSARLRAFE 286

Query: 316 RTVERSIE 323
           R     IE
Sbjct: 287 RRDNYQIE 294


>gi|220918988|ref|YP_002494292.1| S-adenosyl-methyltransferase MraW [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|263446697|sp|B8J8E0|RSMH_ANAD2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|219956842|gb|ACL67226.1| S-adenosyl-methyltransferase MraW [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 310

 Score =  181 bits (458), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 116/299 (38%), Positives = 172/299 (57%), Gaps = 5/299 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H PVL  +++ LL P PG++ LD T G GG+S    + G+ VIALD+DP A++     + 
Sbjct: 7   HEPVLANEILELLRPRPGELFLDGTLGGGGHSGLLLEAGARVIALDKDPRALAAATARLA 66

Query: 80  DYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
            + E F   ++ F   ++ +   G   VDG + DLGVSS Q+D  +RGFSF + GPLDMR
Sbjct: 67  RFGEAFRAVRSDFRDAKNVLEALGIAAVDGALVDLGVSSPQLDEAERGFSFSRPGPLDMR 126

Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQTTQDLSSLI 195
           M  +G +  D++ + + ++L RIL   GEE  A  +A A+    ++ AP  T +    + 
Sbjct: 127 MGDTGETLEDLLRRIDERELARILREYGEEPFARPVARAVKAALETEAPLDTARLAEVVA 186

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
                 +  +RIHPATR+FQALRI VN+E+  LA  L      L  GG    +SFHSLED
Sbjct: 187 GAIPRKAWPHRIHPATRTFQALRIAVNDELGALAAWLDGLPGVLAPGGRAAAISFHSLED 246

Query: 256 RLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           R+VK+ F + +        + + +    A F +IT+K V  + E++A N R+RSA+LRA
Sbjct: 247 RMVKEKFRALTQACTCPPDLPVCACGAKASFAAITRKAVKASDEEIARNPRARSARLRA 305


>gi|313632482|gb|EFR99498.1| S-adenosyl-methyltransferase MraW [Listeria seeligeri FSL N1-067]
          Length = 312

 Score =  181 bits (458), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 105/303 (34%), Positives = 173/303 (57%), Gaps = 11/303 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VLL + + +L   P  + +DAT G  G+S           ++ A D+D  A+   + 
Sbjct: 4   HETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDNAKI 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  Y ++ +  ++ F  +++ + ++G   VDG+++DLGVSS Q+D  +RGFS+ +   L
Sbjct: 64  KLAAYSDKVTFVKSNFRYMKEALNERGISEVDGILYDLGVSSPQLDERERGFSYHQDAAL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     ++A  VVN+ + +DL RI    GEEK + +IA  I +RR+  P +TT +L 
Sbjct: 124 DMRMDREQELTAKIVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTGELV 183

Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  +   ++    HP  R+FQA+RI VN+E+  +   L  A   +K GG + V++FH
Sbjct: 184 DIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLIKPGGRISVITFH 243

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+ K  F  A++   +     +IP    P  F+  T+K +VP++E++  N R+RSA
Sbjct: 244 SLEDRITKHLFQEATKGPDLPPGLPVIPDEYKPD-FKLATRKPIVPSEEELEQNNRARSA 302

Query: 310 KLR 312
           KLR
Sbjct: 303 KLR 305


>gi|313905185|ref|ZP_07838553.1| S-adenosyl-methyltransferase MraW [Eubacterium cellulosolvens 6]
 gi|313469938|gb|EFR65272.1| S-adenosyl-methyltransferase MraW [Eubacterium cellulosolvens 6]
          Length = 326

 Score =  180 bits (457), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 109/302 (36%), Positives = 164/302 (54%), Gaps = 9/302 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VLL + I  L   P  + +D T G GG+S   CK    G  +I +D+D  A+   Q 
Sbjct: 5   HKSVLLTETIDHLAIKPEGIYVDGTLGGGGHSYEICKRLSGGGRLIGIDQDEDAIRAAQA 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  YK++ ++ +  +  +   + + GV   DG++ DLGVSS Q+D  +RGF++++   L
Sbjct: 65  RLAKYKDRVTILRGNYRNMVQMLAEIGVTSVDGILLDLGVSSYQLDTAERGFTYREDTRL 124

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM      SA DVVN    + L +++   GEEK A  IA  I   RQ  P +TT +L+
Sbjct: 125 DMRMDRRQPFSAFDVVNSYTKEKLYQVIRDYGEEKFAENIAKHICLERQKKPVETTGELA 184

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  +    + N  HPA R+FQA+RI VN E++ L   L      L  GG L V++FH
Sbjct: 185 EIIKGAIPAKLRANGGHPAKRTFQAIRIEVNAELDVLKDSLDGMIDILNDGGRLCVITFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK  F       +      +      +   ++T+K +VPT E++ FN RS+S+K
Sbjct: 245 SLEDRIVKNNFRRNENPCICPPQFPVCVCGKKSKGSTVTRKPIVPTAEEMEFNPRSKSSK 304

Query: 311 LR 312
           LR
Sbjct: 305 LR 306


>gi|197124208|ref|YP_002136159.1| S-adenosyl-methyltransferase MraW [Anaeromyxobacter sp. K]
 gi|263446708|sp|B4UER3|RSMH_ANASK RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|196174057|gb|ACG75030.1| S-adenosyl-methyltransferase MraW [Anaeromyxobacter sp. K]
          Length = 310

 Score =  180 bits (457), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 116/299 (38%), Positives = 172/299 (57%), Gaps = 5/299 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H PVL  +++ LL P PG++ LD T G GG+S    + G+ VIALD+DP A++     + 
Sbjct: 7   HEPVLANEILELLRPRPGELFLDGTLGGGGHSGLLLEAGARVIALDKDPRALAAATARLA 66

Query: 80  DYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
            + E F   ++ F   ++ +   G   VDG + DLGVSS Q+D  +RGFSF + GPLDMR
Sbjct: 67  RFGEAFRAVRSDFRDAKNVLQALGIAAVDGALVDLGVSSPQLDEAERGFSFSRPGPLDMR 126

Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQTTQDLSSLI 195
           M  +G +  D++ + + ++L RIL   GEE  A  +A A+    ++ AP  T +    + 
Sbjct: 127 MGDTGETLEDLLRRIDERELARILREYGEEPFARPVARAVKAALETEAPLDTARLAEVVA 186

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
                 +  +RIHPATR+FQALRI VN+E+  LA  L      L  GG    +SFHSLED
Sbjct: 187 GAIPRKAWPHRIHPATRTFQALRIAVNDELGALAAWLDGLPGVLAPGGRAAAISFHSLED 246

Query: 256 RLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           R+VK+ F + +        + + +    A F +IT+K V  + E++A N R+RSA+LRA
Sbjct: 247 RMVKEKFRALTQACTCPPDLPVCACGAKASFAAITRKAVKASDEEIARNPRARSARLRA 305


>gi|197294245|ref|YP_001798786.1| S-adenosyl-methyltransferase MraW [Candidatus Phytoplasma
           australiense]
 gi|262824821|sp|B1V910|RSMH_PHYAS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|171853572|emb|CAM11442.1| S-adenosyl-methyltransferase [Candidatus Phytoplasma australiense]
          Length = 303

 Score =  180 bits (457), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 117/306 (38%), Positives = 173/306 (56%), Gaps = 14/306 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H+ VL E+ I+ LN  P  V +DAT G GG++ S      +  + + D+D  A S  Q+ 
Sbjct: 5   HISVLKEEAISFLNINPNGVYVDATLGQGGHTLSILNHLQDGFLYSFDQDLKACSDIQKK 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +        +  + FS L+  +  + V   DG++FDLG+SS QID   RGFS+  + PLD
Sbjct: 65  LNP-NWPIEIIHSNFSNLKLELAKRNVFQLDGILFDLGISSCQIDDSQRGFSYLHNAPLD 123

Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MR      ++A ++VN  + + L  I  I GEEK+A+ IA  I+K R   P +T+ DL +
Sbjct: 124 MRFDNRQKLTAQEIVNFYSFEKLKNIFHIYGEEKKAALIAKQIIKNR---PLKTSYDLVA 180

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           +   T  F K ++ H A + FQALRI VN E+E L Q L  + + LK  G ++V+SFHSL
Sbjct: 181 I---TDMFYKYHKGHSAKKIFQALRIEVNQELEVLKQALSQSLELLKKDGSIVVISFHSL 237

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHP-AVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           EDR+VK FF   S      +  I S  +P    + ITKK  +P++ ++  N RS SAKLR
Sbjct: 238 EDRIVKHFFKKNSVFEFPKKLPIMSVDYPQPALRIITKKPCIPSEVEMKNNPRSISAKLR 297

Query: 313 AGMRTV 318
           A ++ +
Sbjct: 298 AAVKNI 303


>gi|326382552|ref|ZP_08204243.1| S-adenosyl-methyltransferase MraW [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326198671|gb|EGD55854.1| S-adenosyl-methyltransferase MraW [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 339

 Score =  180 bits (457), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 113/315 (35%), Positives = 172/315 (54%), Gaps = 27/315 (8%)

Query: 20  HVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPF 69
           HVPV+ +++ ALL PA         G V++D T GAGG++  F     G  VIA+DRD  
Sbjct: 11  HVPVMADRMFALLEPALTRVSADGTGAVLVDGTLGAGGHTEYFLDRLDGLYVIAIDRDTS 70

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFS 126
           A+    E +  + ++       + +++D V   G   VDGV+ DLGVSSMQ+D  +RGF+
Sbjct: 71  AIGIASERLGRFGDRVEFHHNRYDEIEDVVHAAGRTVVDGVLLDLGVSSMQLDRAERGFA 130

Query: 127 FQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           +    PLDMRM+    ++A+D++N  +   L R+L   GEE+ A +IA A+V+ R   PF
Sbjct: 131 YAVDAPLDMRMNADDELTAADILNTYDHGALARVLSEYGEERFAGKIASAVVRERAKEPF 190

Query: 186 QTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
            T+  L  L+  T+   ++    HPA R+FQALRI VN+E++ L   + ++ + L  GG 
Sbjct: 191 TTSGRLVELLYATIPAATRRTGGHPAKRTFQALRIEVNHELDSLRGVIPASLEVLGIGGR 250

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSN------AHPAVFQSITKKVVVPTQE 298
           L V+S+ SLEDR+VK+ FA       AV +  P+            F  +T+        
Sbjct: 251 LAVMSYQSLEDRIVKRDFAR------AVENTTPAGLPVDLPGTAPEFSLVTRGAEQADAA 304

Query: 299 DVAFNRRSRSAKLRA 313
           + A N RS   ++RA
Sbjct: 305 ERAANPRSAPVRIRA 319


>gi|329766778|ref|ZP_08258308.1| ribosomal RNA small subunit methyltransferase H [Gemella
           haemolysans M341]
 gi|328839289|gb|EGF88871.1| ribosomal RNA small subunit methyltransferase H [Gemella
           haemolysans M341]
          Length = 311

 Score =  180 bits (457), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 109/304 (35%), Positives = 168/304 (55%), Gaps = 10/304 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H  VLL + +  LN     + +D T G  G+S    K   N  + A D+D  A+   +  
Sbjct: 4   HYSVLLNEAVEGLNIIEDGIYVDCTLGGAGHSLEILKQLKNGKLYAFDQDNIALENAKNK 63

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           + +Y ++    ++ F  L++ + + GV   DGV++DLGVSS Q+D  +RGFS+     LD
Sbjct: 64  LAEYSDKVVFIKSNFVNLKEKLAEHGVHEVDGVLYDLGVSSPQLDTPERGFSYNYDTKLD 123

Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM     ISA +VVN+ +  DL +I    GEE  + +IA  I K+R+  P +TT +L  
Sbjct: 124 MRMDTDAKISAYEVVNEYSYHDLVKIFYRYGEENFSKQIARNIEKKREQKPIETTFELVE 183

Query: 194 LIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +I++++  +K     HPA R FQA+RI VNNE+      L  A   +K GG + V++FHS
Sbjct: 184 IIKESIPAAKRRTGGHPAKRVFQAIRIAVNNELSVFEDSLEQAIDIVKVGGRISVITFHS 243

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRSAK 310
           LEDR+ K+ F S + K   +   +P     ++   + IT+K + P+  ++  N RSRSAK
Sbjct: 244 LEDRICKQIFNSYA-KAKDIPKNLPIMPEESLSKLKVITRKPIYPSDIELEENNRSRSAK 302

Query: 311 LRAG 314
           LR  
Sbjct: 303 LRVA 306


>gi|254515249|ref|ZP_05127310.1| S-adenosyl-methyltransferase MraW [gamma proteobacterium NOR5-3]
 gi|219677492|gb|EED33857.1| S-adenosyl-methyltransferase MraW [gamma proteobacterium NOR5-3]
          Length = 308

 Score =  180 bits (457), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 117/303 (38%), Positives = 169/303 (55%), Gaps = 15/303 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H  VLL + +  L  +P  + +D TFG GG+SR   K  ++    D   FA    +E  R
Sbjct: 5   HETVLLHEAVDSLVSSPAGLYVDGTFGRGGHSREILKRLND----DGRLFACDKDEEAER 60

Query: 80  DYKE------QFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           D  E      +FS  + +F+ L   +   G   V G++ DLGVSS Q+D  +RGFSFQ  
Sbjct: 61  DALELAGEDGRFSFARGSFAALPALLAQHGLGPVHGILLDLGVSSPQLDQAERGFSFQHD 120

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
           GPLDMRM  S G SA+D +  A+ +++  +L   GEE+ A RIA AIV+ R   P   T 
Sbjct: 121 GPLDMRMDRSRGESAADWIASASEQEIIDVLREYGEERFARRIAGAIVRARAETPLTRTS 180

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            L++++ +     + ++ HPATR+FQA+RI VN E+++LA+ L  A   L  GG L+V+S
Sbjct: 181 QLAAIVSEAHPRWEKHK-HPATRAFQAIRIRVNRELDDLAELLSVALSVLAVGGRLVVIS 239

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRLVK+     S      R++   +        +  K    ++E+VA N RSRSA
Sbjct: 240 FHSLEDRLVKRHLRDMSRGPQLPRNLPVRDVESGAQMRLLGKAQRASKEEVAGNPRSRSA 299

Query: 310 KLR 312
            +R
Sbjct: 300 IMR 302


>gi|210634276|ref|ZP_03298049.1| hypothetical protein COLSTE_01971 [Collinsella stercoris DSM 13279]
 gi|210158878|gb|EEA89849.1| hypothetical protein COLSTE_01971 [Collinsella stercoris DSM 13279]
          Length = 306

 Score =  180 bits (457), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 117/307 (38%), Positives = 174/307 (56%), Gaps = 16/307 (5%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYS-RSFCKMGSN--VIALDRDPFAVSCGQETM-- 78
           +L++V+  L  + G V  D T G  G+S R   ++G+   ++ +D+D  A+    + +  
Sbjct: 1   MLQEVLEQLQLSAGSVACDCTLGGAGHSVRMAAQVGTEGLLLGIDQDDMALEAAGKRLDA 60

Query: 79  RDYKEQFSLFQATFSQLQDY-----VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                   L +  F  L +      VP  GVDG +FDLGVSS Q+D   RGFS+ +  PL
Sbjct: 61  EAPGTPHKLLKGNFGDLDELLCSAQVP--GVDGFLFDLGVSSPQLDIPGRGFSYNEDAPL 118

Query: 134 DMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           DMRM    + ++A++V+N     DL RIL I GEEK A +IA  IV+RRQ AP  TT D 
Sbjct: 119 DMRMDPGTNTLNAAEVLNTYTEADLARILRIYGEEKFARQIAREIVRRRQVAPLATTGDF 178

Query: 192 SSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+  +   ++ +  HPA RSFQA+RI VN+E++ L +GL +A + L   G + V+S+
Sbjct: 179 VDVIKAGIPAAARRHGGHPAKRSFQAIRIEVNHELDVLERGLEAAVRWLNPSGRVCVISY 238

Query: 251 HSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK+ F   S G        +    +  + +  T+K +V T E+VA N R+RSA
Sbjct: 239 HSLEDRIVKRLFQELSQGCTCPPDIPVCVCGNVPIVKVTTRKPLVATAEEVARNPRARSA 298

Query: 310 KLRAGMR 316
           K+R   R
Sbjct: 299 KIRCAER 305


>gi|186685061|ref|YP_001868257.1| S-adenosyl-methyltransferase MraW [Nostoc punctiforme PCC 73102]
 gi|262824674|sp|B2J183|RSMH_NOSP7 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|186467513|gb|ACC83314.1| S-adenosyl-methyltransferase MraW [Nostoc punctiforme PCC 73102]
          Length = 298

 Score =  180 bits (457), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 117/304 (38%), Positives = 169/304 (55%), Gaps = 28/304 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           H+ VL  +VI  L   PG   LD T G GG+SR   +  ++V   A+D+D  A+    + 
Sbjct: 18  HISVLGREVIEGLAVRPGGHYLDVTVGGGGHSRLILEAAADVRVTAVDQDEDALVAANKN 77

Query: 78  MRDYKEQFSLFQATFSQLQDY-VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
           + +Y ++    Q  +S   DY  P    DG++ DLGVSS  +D  +RGFSF+++  LDMR
Sbjct: 78  LAEYSDRI---QFIYSNFADYEFPPNTFDGILADLGVSSYHLDQAERGFSFRQAANLDMR 134

Query: 137 MS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M     ++A+DV+N  +  +L  I    GEE+ + RIA  IV+RR   P  TT +L+  I
Sbjct: 135 MDRGRSLTAADVINNWDEAELADIFFKYGEERLSRRIARRIVERR---PLHTTTELADAI 191

Query: 196 QKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
             +V    +  RIHPATR FQALRI VN+E++ L   L  A  AL  GG + ++SFHSLE
Sbjct: 192 ASSVPPKYRYGRIHPATRVFQALRIVVNDELKSLETFLDKAPNALVPGGRIAIISFHSLE 251

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           DR VK     R+  ++ V               +TKK ++  +E+++ N RSRSAKLR  
Sbjct: 252 DRPVKHGL--RNSPLLKV---------------LTKKPIIAQEEEISNNPRSRSAKLRIA 294

Query: 315 MRTV 318
            + V
Sbjct: 295 EKLV 298


>gi|307564714|ref|ZP_07627244.1| S-adenosyl-methyltransferase MraW [Prevotella amnii CRIS 21A-A]
 gi|307346642|gb|EFN91949.1| S-adenosyl-methyltransferase MraW [Prevotella amnii CRIS 21A-A]
          Length = 318

 Score =  180 bits (457), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 118/311 (37%), Positives = 175/311 (56%), Gaps = 15/311 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFA---VSC 73
           HVPVLL++ +  LN   G + +D TFG GG+SR   S     +++ + D+D  A   +  
Sbjct: 9   HVPVLLKESVDGLNIRKGGIYVDVTFGGGGHSREILSHLSGDAHLYSFDQDLDAEQNIKY 68

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQ-K 129
             E+ ++  ++F+  ++ F  L++++   GVD   G++ DLGVSS   D  +RGFSF+  
Sbjct: 69  LTESDKELSKKFTFVRSNFRYLKNWMRYYGVDKIDGLIADLGVSSHHFDDENRGFSFRFD 128

Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM+  SG  A DV+N    +DL R+  + GE KQ+ RIA AIVK R +   +TT
Sbjct: 129 DAPLDMRMNKESGKQAFDVLNDYKEEDLARLFYVYGELKQSKRIAAAIVKGRANKAIRTT 188

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            D   ++    +F +        + FQALRI VN E++ L + L SA + L  GG L V+
Sbjct: 189 TDFLKIVNP--FFMRVREKKDMAKLFQALRIEVNQEMQALTKMLTSAIELLAPGGRLSVI 246

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           ++HSLEDRLVK F  S + +    +        P  F+ +  KV++ T E++  N RSRS
Sbjct: 247 TYHSLEDRLVKNFMKSGNAEGKISQDFFGRIKTP--FKLVNNKVIIATDEEIERNPRSRS 304

Query: 309 AKLRAGMRTVE 319
           AKLR   R  E
Sbjct: 305 AKLRIAERKHE 315


>gi|289435382|ref|YP_003465254.1| S-adenosyl-methyltransferase [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289171626|emb|CBH28172.1| S-adenosyl-methyltransferase [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 312

 Score =  180 bits (457), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 105/303 (34%), Positives = 173/303 (57%), Gaps = 11/303 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VLL + + +L   P  + +DAT G  G+S           ++ A D+D  A+   + 
Sbjct: 4   HETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDNAKI 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  Y ++ +  ++ F  +++ + ++G   VDG+++DLGVSS Q+D  +RGFS+ +   L
Sbjct: 64  KLAAYSDKVTFVKSNFRYMKEALNERGISEVDGILYDLGVSSPQLDERERGFSYHQDAAL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     ++A  VVN+ + +DL RI    GEEK + +IA  I +RR+  P +TT +L 
Sbjct: 124 DMRMDREQELTAKIVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTGELV 183

Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  +   ++    HP  R+FQA+RI VN+E+  +   L  A   +K GG + V++FH
Sbjct: 184 DIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALSLIKPGGRISVITFH 243

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+ K  F  A++   +     +IP    P  F+  T+K +VP++E++  N R+RSA
Sbjct: 244 SLEDRITKHLFQEATKGPDLPPGLPVIPDEYKPD-FKLATRKPIVPSEEELEQNNRARSA 302

Query: 310 KLR 312
           KLR
Sbjct: 303 KLR 305


>gi|170078284|ref|YP_001734922.1| S-adenosyl-methyltransferase [Synechococcus sp. PCC 7002]
 gi|262825754|sp|B1XP73|RSMH_SYNP2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|169885953|gb|ACA99666.1| S-adenosyl-methyltransferase [Synechococcus sp. PCC 7002]
          Length = 290

 Score =  180 bits (457), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 112/298 (37%), Positives = 170/298 (57%), Gaps = 28/298 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           H+ VL E+++A L   P    LD T G GG++    +   +V    +DRD  A++   E 
Sbjct: 7   HISVLKEELVAGLGVKPEGHYLDVTLGGGGHTELILQQYPDVRVTGVDRDSQAIAAASER 66

Query: 78  MRDYKEQFSLFQATFSQLQDYVPD-KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
           ++ + ++F   ++ F +   Y P  +  DG++ DLGVSS+Q D GDRGFSF+   PLDMR
Sbjct: 67  LKSFGDRFRAVRSNFGE---YQPQGEKFDGIIADLGVSSVQFDQGDRGFSFRFDAPLDMR 123

Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M     ++A+D+VN    K L  +    G+E+ + +IA  IV +R   P QTT++L  ++
Sbjct: 124 MDQQQTLTAADIVNTYEEKALANLFYEYGDERLSRQIAKKIVMKR---PIQTTKELEEIV 180

Query: 196 QKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
             T +  ++  +IHPATR FQALRI VN E++ L   L +A + LK  G L ++SFHSLE
Sbjct: 181 FYTYHPKARKVKIHPATRVFQALRIAVNGELDALQYLLVNAPQWLKPQGRLGIISFHSLE 240

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           DRLVK  F  R                  +++ +TKK +V ++ ++  N R+RSAKLR
Sbjct: 241 DRLVKNAFRQRD-----------------IWRILTKKPMVASETEINQNPRARSAKLR 281


>gi|326803777|ref|YP_004321595.1| S-adenosyl-methyltransferase MraW [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326650961|gb|AEA01144.1| S-adenosyl-methyltransferase MraW [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 318

 Score =  180 bits (457), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 117/312 (37%), Positives = 174/312 (55%), Gaps = 12/312 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQE 76
           H+ VLL++ +  LN       +D T G GG   Y  S       + A D+D  A++  +E
Sbjct: 7   HITVLLKETVDDLNVKEDGSYVDCTLGGGGHTSYLLSKLSAKGRLYAFDQDIQAINHAKE 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
              D     Q +L  A F+QL++ +  +GV   DG+++DLGVSS Q+D  +RGFS+++  
Sbjct: 67  RFADAIAAGQLTLIHANFAQLEEQLAQRGVKQVDGILYDLGVSSPQLDDRERGFSYKQDA 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  S  ++A ++VN  +  DL RIL   GEEK A  IA  I  RRQ A    T +
Sbjct: 127 PLDMRMDQSQTLTAKEIVNDWSYVDLVRILKRYGEEKFAKAIARNIENRRQKAAITRTSE 186

Query: 191 LSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I++ +   ++    HPA RSFQA+RI VN+E+  +   L  A + +K  G +  +S
Sbjct: 187 LVEIIKEAIPAPARRKGGHPAKRSFQAIRIAVNDELGAIESSLSQALQLIKVEGRIAAIS 246

Query: 250 FHSLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           F SLEDR+VK  F  AS    + +   ++ S    A F+ + KK + P+QE++  N R++
Sbjct: 247 FQSLEDRIVKVMFKEASTVDNLPSQLPLLESQLPQAKFRLVNKKPIYPSQEELDKNSRAQ 306

Query: 308 SAKLRAGMRTVE 319
           SAKLR   R  E
Sbjct: 307 SAKLRVIERVSE 318


>gi|227889751|ref|ZP_04007556.1| S-adenosyl-methyltransferase [Lactobacillus johnsonii ATCC 33200]
 gi|227849615|gb|EEJ59701.1| S-adenosyl-methyltransferase [Lactobacillus johnsonii ATCC 33200]
          Length = 322

 Score =  180 bits (457), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 112/311 (36%), Positives = 178/311 (57%), Gaps = 15/311 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77
           H  VLL + I  LNP  G + +DATFG GG++R          VI  D+D +A+S  +E+
Sbjct: 12  HKSVLLHETIDNLNPKDGGLYVDATFGGGGHARYLLSKLNKGTVIGFDQDEYAISMAKES 71

Query: 78  MRDY-----KEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
                    + +  L    F  L++ + +     G+DG+ +DLGVSS Q D  +RGFS++
Sbjct: 72  FAKELQVGAEPRLILVHDNFCHLKENLVELGISDGIDGIYYDLGVSSPQFDQPERGFSYR 131

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
               LDMRM  S  + A  +VN  + K+L+ +L   G+EK + +IA  IV RR+  P  T
Sbjct: 132 FDARLDMRMDQSQELDAYTIVNTWSQKELSDVLYKYGDEKFSRQIARKIVDRRKEKPIVT 191

Query: 188 TQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T DL  +I+  +  +++ +  HPA +SFQA+R+ VNNE+  L + L  A K LK GG + 
Sbjct: 192 TFDLVDVIKDAIPAYARRSGGHPAKKSFQAIRVAVNNELGVLQESLEEAIKLLKPGGRIS 251

Query: 247 VVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           V++F S ED++VKK F   S  ++     M+P+++ P + + I++K ++ + +++  N R
Sbjct: 252 VITFQSHEDKIVKKIFKKYSEVEIPRGMPMVPADSKPTL-RLISRKPIMASSDELEENNR 310

Query: 306 SRSAKLRAGMR 316
           S SAKLR   +
Sbjct: 311 SHSAKLRVAEK 321


>gi|193213705|ref|YP_001999658.1| S-adenosyl-methyltransferase MraW [Chlorobaculum parvum NCIB 8327]
 gi|263445798|sp|B3QLX2|RSMH_CHLP8 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|193087182|gb|ACF12458.1| S-adenosyl-methyltransferase MraW [Chlorobaculum parvum NCIB 8327]
          Length = 318

 Score =  180 bits (457), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 109/309 (35%), Positives = 174/309 (56%), Gaps = 18/309 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM------GSNVIALDRDPFAVSC 73
           H PVL +   +LL   PG + +D T G GG+S    +        S ++ +D+D +A+  
Sbjct: 7   HEPVLADATTSLLVTRPG-IYIDGTLGGGGHSLELLRRLDALDGESLLVGIDQDSYALEA 65

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYV------PDKGVD--GVVFDLGVSSMQIDCGDRGF 125
             + ++D+ ++  L +  FS +++ +      P +G++  G++ DLGVSS QID   RGF
Sbjct: 66  AGQKLQDFGDKAILLRGNFSMVRELLAPVKRGPGEGLEVMGLLLDLGVSSFQIDTPVRGF 125

Query: 126 SFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           S+ + GPLDMRM   G ++A+D+VN    + L R+    GEE    RIA A+V  R  AP
Sbjct: 126 SYLRDGPLDMRMDPDGPLTAADIVNDYEEQALARLFFRYGEEAHGGRIARAVVSARSVAP 185

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
             TT  L+ ++++     K++ I   +R +QALRI VN+E+  L Q L      L  GG 
Sbjct: 186 ITTTGGLAEVVRRACP-RKDSPIKTLSRIYQALRIEVNDELGVLQQALEDGFAVLSPGGR 244

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFN 303
             V+S+HSLEDR+VK+FF++R       + + +     PA  + +T+K V   + +V+ N
Sbjct: 245 FAVISYHSLEDRIVKRFFSARCTADWGPKGLPLREPLKPAEAELVTRKSVQAGEAEVSRN 304

Query: 304 RRSRSAKLR 312
            R+RSA+LR
Sbjct: 305 PRARSARLR 313


>gi|288929756|ref|ZP_06423599.1| S-adenosyl-methyltransferase MraW [Prevotella sp. oral taxon 317
           str. F0108]
 gi|288328857|gb|EFC67445.1| S-adenosyl-methyltransferase MraW [Prevotella sp. oral taxon 317
           str. F0108]
          Length = 319

 Score =  180 bits (456), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 115/309 (37%), Positives = 175/309 (56%), Gaps = 19/309 (6%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMG--SNVIALDRDPFAVSC- 73
           G HVPVLL + +  LN   G V +D TFG GG++R    KM   + + + D+D  A    
Sbjct: 11  GYHVPVLLAESVEALNIVEGGVYVDVTFGGGGHTRHILSKMDGTARLFSFDQDADAEENT 70

Query: 74  ------GQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRG 124
                 GQ+ + +  E+F+  ++ F  L +++   GVD   G++ DLGVSS   D  +RG
Sbjct: 71  RRKSPDGQQPLAN-DERFTFVRSNFRYLDNWMRYYGVDHVDGILADLGVSSHHFDDQERG 129

Query: 125 FSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           FSF+   PLDMRM+  + ++A+ V+N  + + L  +  + GE +Q+ RIA AIVK R  A
Sbjct: 130 FSFRFDAPLDMRMNKNAALTAAQVLNTYDEERLADVFFLYGEIRQSRRIASAIVKARAKA 189

Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
             QTTQ  +++++   +F +        + FQALRI VNNE+  L + L++A + L  GG
Sbjct: 190 AVQTTQQFAAIVEP--FFKREREKKEMAKLFQALRIEVNNEMNALKEMLQAAAQWLGKGG 247

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            L V+++HSLEDR+VK F  + + +    +        P  F  +  KV+VPT ++   N
Sbjct: 248 RLSVITYHSLEDRMVKNFMKTGNVEGKLSQDFFGRAQTP--FTLVNNKVIVPTDDEQLRN 305

Query: 304 RRSRSAKLR 312
            RSRSAKLR
Sbjct: 306 PRSRSAKLR 314


>gi|90962030|ref|YP_535946.1| S-adenosyl-methyltransferase MraW [Lactobacillus salivarius UCC118]
 gi|122448863|sp|Q1WT95|RSMH_LACS1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|90821224|gb|ABD99863.1| S-adenosyl-methyltransferase [Lactobacillus salivarius UCC118]
 gi|300214731|gb|ADJ79147.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Lactobacillus salivarius CECT 5713]
          Length = 314

 Score =  180 bits (456), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 111/305 (36%), Positives = 173/305 (56%), Gaps = 13/305 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYS-RSFCKMGSN--VIALDRDPFAVSCGQE 76
           H+ VLL + +  LN  P    +D T G GG+S     K+  N  + + D+D  A++  ++
Sbjct: 6   HITVLLNEAVDGLNIKPDGTYVDCTLGGGGHSGLILSKLSENGKLYSFDQDITAINFNKD 65

Query: 77  TMRDYKE--QFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
              +  E  + +  ++ F  + + +  +   GVDG+++DLGVSS Q D  DRGFS+    
Sbjct: 66  KFEEENELGKINFIKSNFRNISEELNKRNILGVDGILYDLGVSSPQFDNADRGFSYNYDA 125

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  S  ++A DVVN  + + L RI    GEEK A  IA  I K RQ  P +TT  
Sbjct: 126 PLDMRMDQSQSLTARDVVNDWSYEQLVRIFFRYGEEKFAKSIARRIEKVRQQTPIETTGQ 185

Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  LI++ +   ++    HPA ++FQA+RI VN+E+  L + L  A   L  GG + V++
Sbjct: 186 LVDLIKEAIPAKARRKGGHPAKKTFQAIRIAVNDELGALEESLEQALDLLNPGGRISVIT 245

Query: 250 FHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           F SLEDRLVK  F  ++   ++     +IP ++    ++ IT+K +VP+++++  N R+ 
Sbjct: 246 FQSLEDRLVKVMFKQKTSLPELPPGLPVIP-DSQKVEYKLITRKPIVPSEDEITHNNRAH 304

Query: 308 SAKLR 312
           SAKLR
Sbjct: 305 SAKLR 309


>gi|319764380|ref|YP_004128317.1| s-adenosyl-methyltransferase mraw [Alicycliphilus denitrificans BC]
 gi|317118941|gb|ADV01430.1| S-adenosyl-methyltransferase MraW [Alicycliphilus denitrificans BC]
          Length = 308

 Score =  180 bits (456), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 123/306 (40%), Positives = 174/306 (56%), Gaps = 16/306 (5%)

Query: 20  HVPVLL-EKVIALLN--PAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSC 73
           H  VL  E V ALL    AP    +D TFG GG++R    ++G+   ++A D+DP A+  
Sbjct: 7   HTTVLASEAVDALLGGAAAPVGTFVDGTFGRGGHARLILQRLGAQGRLVAFDKDPEAI-- 64

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             E  R +  +FS+    FS L + +P   V GV+ DLG+SS QID   RGFSF+  GPL
Sbjct: 65  -HEAARIHDARFSIRHQGFSHLGE-LPAASVAGVLLDLGISSPQIDDPARGFSFRFDGPL 122

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR-QSAPFQTTQDL 191
           DMRM  + G S ++ +  A    +  ++   GEE+ A  IA AIV RR Q  P   T +L
Sbjct: 123 DMRMDTTRGQSVAEWLAGAEAAQIAEVIRDYGEERFAGPIAKAIVARRTQGGPIVGTAEL 182

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++   V   +  + +PATR+FQA RIF+N E+EEL Q L ++   L  GG L+V+SFH
Sbjct: 183 ADIVAGAVKTREPGQ-NPATRTFQAFRIFINAELEELQQALEASLTVLAPGGRLVVISFH 241

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+VK+F A R  K M  R    +   P   +++ +  V P+  +V  N R+RSA +
Sbjct: 242 SLEDRIVKQFIA-RHSKEMFDRRAPFAAPTPMRLKALGR--VKPSAAEVVANPRARSAVM 298

Query: 312 RAGMRT 317
           R   RT
Sbjct: 299 RVAERT 304


>gi|296125293|ref|YP_003632545.1| S-adenosyl-methyltransferase MraW [Brachyspira murdochii DSM 12563]
 gi|296017109|gb|ADG70346.1| S-adenosyl-methyltransferase MraW [Brachyspira murdochii DSM 12563]
          Length = 311

 Score =  180 bits (456), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 97/298 (32%), Positives = 169/298 (56%), Gaps = 16/298 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H PV+L++V++ + P   K+++DAT G GG++++   +   V + +RD   +   +  ++
Sbjct: 20  HTPVMLKEVLSYI-PENAKIVIDATLGEGGHTKAMLDLNLEVHSFERDSTILDIAKRRLK 78

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
           DY   F  +  T+ ++ + + +K +   D +++DLGVS       +RGFSF+ +  LDMR
Sbjct: 79  DYP-NFHYYNNTYDKMMECLDEKVIGNADFMLYDLGVSLFHFKKAERGFSFKDNTMLDMR 137

Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI- 195
           +  +  SA DV+N  + ++L R+    GE   A ++A  IVK R     +T+++L S+I 
Sbjct: 138 LGINEKSAYDVINGYSEEELERVFRDYGELSNARKMARIIVKERDKRKIETSKELESIIF 197

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
             T    +  +IHPAT  FQA+RI VN+E+  L + + +    LK  G+ +++S+HSLED
Sbjct: 198 HNTDKSQRYGKIHPATLVFQAIRIEVNDELNILEKSILNIPNILKNNGVAVIISYHSLED 257

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           R+VK+FF               +     +F+ +  KV +PT +++  N  SRSAK+RA
Sbjct: 258 RIVKRFFKENE----------KTKNKDGIFKLLNNKVKLPTNDEIKSNPASRSAKMRA 305


>gi|325198906|gb|ADY94362.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis G2136]
          Length = 316

 Score =  180 bits (456), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 112/287 (39%), Positives = 165/287 (57%), Gaps = 10/287 (3%)

Query: 39  VILDATFGAGGYSR-SFCKMG--SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95
           V +D TFG GG+SR    ++G    +I  D+DP A++  +E  R  K +  +    F+  
Sbjct: 16  VYVDGTFGRGGHSRLILSRLGDAGRLIVFDKDPQAIAVAEELARSDK-RVGVVHGGFASF 74

Query: 96  QDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQA 151
           Q  +   G   VDG +FDLG+SS QID G RGFSF+   PLDMRM  + G+SA++ +  A
Sbjct: 75  QAALDGLGIGKVDGALFDLGISSPQIDDGSRGFSFRFDAPLDMRMDTTRGMSAAEWIAVA 134

Query: 152 NVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPAT 211
           + +DL  ++   GEE+ + +IA AIV +R  +P  TT+ L+ ++ + V   +  +  PAT
Sbjct: 135 SEQDLHEVIKNYGEERFSRQIARAIVAQRAESPIDTTRKLAQIVAQNVRTRERGQ-DPAT 193

Query: 212 RSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMA 271
           R+FQA+RIF+N E+EE+   L      LK GG L V++FHSLEDR+VK+F    S     
Sbjct: 194 RTFQAVRIFINRELEEVGAVLPQVMCRLKEGGRLAVIAFHSLEDRIVKQFVKKYSQHAPL 253

Query: 272 VRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
            R      A  P +   I  + + P + ++A N R+RSA LR   RT
Sbjct: 254 PRWAAVREADLPELPLKIVGRALKPGEAEIAANPRARSAVLRVAERT 300


>gi|162447417|ref|YP_001620549.1| S-adenosylmethionine-dependent methyltransferase [Acholeplasma
           laidlawii PG-8A]
 gi|263433262|sp|A9NFP3|RSMH1_ACHLI RecName: Full=Ribosomal RNA small subunit methyltransferase H 1;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase 1;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH 1
 gi|161985524|gb|ABX81173.1| S-adenosylmethionine-dependent methyltransferase [Acholeplasma
           laidlawii PG-8A]
          Length = 299

 Score =  180 bits (456), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 114/299 (38%), Positives = 172/299 (57%), Gaps = 14/299 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77
           H+ VLL + I  LN  P  + +DAT G GG+S    K     ++ A D+D +A+    E 
Sbjct: 3   HISVLLNESIEGLNIKPNGIYVDATLGGGGHSLEILKKLDKGHLYAFDQDAYAIGRATER 62

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++D+  + +  Q+ FS +++ + + G   VDG++FDLG+SS QID   RGFS+ K   LD
Sbjct: 63  LKDFSNK-TFIQSNFSFIKEKLNELGIYQVDGIIFDLGLSSFQIDDETRGFSYLKDYDLD 121

Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM+    ++A ++VN    + L  I    G+E+ A +IA  IV RR   P  TT +L  
Sbjct: 122 MRMNKDATLTAKEIVNTYERQKLADIFRAYGDEENAWKIAGMIVDRR---PLNTTLEL-- 176

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
            ++ T   +K  + H A R FQALRI VN E+E L + L SA + L  GG L +++F SL
Sbjct: 177 -VEITDIANKGMKGHSAKRVFQALRIEVNKELEVLERALNSALELLNIGGRLSIITFQSL 235

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           ED++VK F+ + S         I +   P + + IT+K V+P++ ++  N RSRSAKLR
Sbjct: 236 EDKMVKSFYKTHSQMDYPKNIDIRTFPKPPL-KIITRKPVLPSEIELEHNSRSRSAKLR 293


>gi|86160181|ref|YP_466966.1| S-adenosyl-methyltransferase MraW [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|123496850|sp|Q2IG17|RSMH_ANADE RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|85776692|gb|ABC83529.1| methyltransferase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 310

 Score =  180 bits (456), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 117/299 (39%), Positives = 172/299 (57%), Gaps = 5/299 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H PVL  +V+ LL P PG++ LD T G GG+S    + G+ VIALD+DP A++     + 
Sbjct: 7   HEPVLANEVLELLRPRPGELFLDGTLGGGGHSGLLLEAGARVIALDKDPRALAAATARLA 66

Query: 80  DYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
            + E F   ++ F   ++ +   G   VDG + DLGVSS Q+D  +RGFSF + GPLDMR
Sbjct: 67  RFGEAFRAVRSDFRDAKNVLEALGIGAVDGALVDLGVSSPQLDEAERGFSFSRPGPLDMR 126

Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQTTQDLSSLI 195
           M  +G +  D++ + + ++L RIL   GEE  A  +A AI    ++ AP  T +    + 
Sbjct: 127 MGDTGETLEDLLRRIDERELARILREYGEEPFARPVARAIKAALEAEAPLDTARLAEVVA 186

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
                 +  +RIHPATR+FQALRI VN+E+  LA  L      L  GG    +SFHSLED
Sbjct: 187 GAIPRKAWPHRIHPATRTFQALRIAVNDELGALAAWLDGLPGVLAPGGRAAAISFHSLED 246

Query: 256 RLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           R+VK+ F + +        + + +    A F +IT+K V  + +++A N R+RSA+LRA
Sbjct: 247 RMVKEKFRALTQACTCPPDLPVCACGAKASFAAITRKAVKASDDEIARNPRARSARLRA 305


>gi|71891921|ref|YP_277651.1| S-adenosyl-dependent methyl transferase [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
 gi|88909187|sp|Q493Q9|RSMH_BLOPB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|71796027|gb|AAZ40778.1| S-adenosyl-dependent methyl transferase [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
          Length = 329

 Score =  180 bits (456), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 114/317 (35%), Positives = 186/317 (58%), Gaps = 22/317 (6%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPF 69
           IH++   H  VLL + I  LN     + +D TFG+GG+S+   S       ++A+D+D  
Sbjct: 15  IHYS---HKSVLLNEAIQSLNIKATGMYIDGTFGSGGHSKLILSQLNKRGRLLAIDKDLL 71

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGF 125
           AV  G+  + +  ++F++  ++FS++ ++V + G    VDG++ DLG+S+ QI+   RGF
Sbjct: 72  AVKIGKH-IAEQDDRFTIIHSSFSKMINHVKNIGLIGSVDGILLDLGISTFQINDCSRGF 130

Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF + G LDMRM  S GISA++ +++A+ +++T +L   GEE+ A  IA  +V +R+  P
Sbjct: 131 SFMQDGLLDMRMDISSGISAAEWLSKASQENITWVLKNFGEERFAKNIAKILVSKRRYTP 190

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
              +  LS LI   +     N+ HPAT+SF A+R+F+NNE+EE+ Q L+ A   L   G 
Sbjct: 191 IIRSIVLSKLICDAIPHRNMNK-HPATKSFLAIRMFINNELEEIMQVLKDALIILSPRGR 249

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV-------VVPTQ 297
           L+V+SF+SLEDRLVK F    S   +++   +P   +  +F     K        + P++
Sbjct: 250 LVVISFNSLEDRLVKYFIREHSC-ALSIPPKLPL-TNNQIFSKYKNKCQLKNIGKLTPSK 307

Query: 298 EDVAFNRRSRSAKLRAG 314
           +++  N R+RSA LR  
Sbjct: 308 QEIKRNIRARSAILRCA 324


>gi|319947571|ref|ZP_08021801.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus australis ATCC 700641]
 gi|319746259|gb|EFV98522.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus australis ATCC 700641]
          Length = 316

 Score =  180 bits (456), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 115/320 (35%), Positives = 179/320 (55%), Gaps = 19/320 (5%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           MS   HH     V VLL + I +L+  P  + +DAT G  G+S       S   ++ A D
Sbjct: 1   MSKEFHH-----VTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSQLSEKGHLYAFD 55

Query: 66  RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120
           +D  A+   ++ +  Y E+   +  +  F  LQ  + + GV   DG+ +DLGVSS Q+D 
Sbjct: 56  QDQHAIDNAEKRLAPYVEKGMVTFIKDNFRNLQARLQELGVNEIDGICYDLGVSSPQLDE 115

Query: 121 GDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
             RGFS++K  PLDMRM+  + ++A DVVN  +  DL RI    GE+K + +IA  I + 
Sbjct: 116 RSRGFSYKKDAPLDMRMNQEASLTAYDVVNNYDYHDLVRIFFKYGEDKFSKQIARKIEQA 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
           R   P +TT +L+ +I K+   +K    + HPA + FQA+RI VN+E+    + ++ A  
Sbjct: 176 RAVKPIETTTELAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMD 234

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPT 296
            L  GG + V++FHSLEDRL K+ F   S  +V      IP +  P + + +++K ++P+
Sbjct: 235 LLAVGGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPEDLKPKM-ELVSRKPILPS 293

Query: 297 QEDVAFNRRSRSAKLRAGMR 316
           QE++  N R+ SAKLR   +
Sbjct: 294 QEELEKNNRAHSAKLRVARK 313


>gi|296106496|ref|YP_003618196.1| S-adenosylmethyl transferase MraW [Legionella pneumophila 2300/99
           Alcoy]
 gi|295648397|gb|ADG24244.1| S-adenosylmethyl transferase MraW [Legionella pneumophila 2300/99
           Alcoy]
          Length = 308

 Score =  180 bits (456), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 118/312 (37%), Positives = 172/312 (55%), Gaps = 18/312 (5%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSC 73
           +  H  VLL + I  L      +  D TFG GG+SR      S+   + A+D+D  AV  
Sbjct: 1   MAKHQSVLLHESIKGLAIKADGIYFDGTFGRGGHSREILNHLSDKGRLFAIDKDLDAV-- 58

Query: 74  GQETMRDY---KEQFSLFQATFSQLQDYVPDKGV----DGVVFDLGVSSMQIDCGDRGFS 126
             +  +DY    ++F +F  +F+Q++++    GV    DG++ DLGVSS Q+D  +RGFS
Sbjct: 59  --QYAKDYFGLDKRFQIFHGSFAQIKEFASQAGVIGAVDGILLDLGVSSPQLDNPERGFS 116

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           F   GPLDMRM  +  I+A++ VN+A V +L  +    GEE+ A RIA AIV  R+  P 
Sbjct: 117 FMLQGPLDMRMDLTQSINAANFVNEAEVNELAHVFRAYGEERFAGRIAKAIVDARKLKPI 176

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            TT +L+ ++++     + ++ HPATR FQA+RI VN E+ +L+  L      L   G L
Sbjct: 177 TTTLELAEIVKEANPKWEKHK-HPATRVFQAIRIHVNQELTDLSNCLEECLDVLGPRGRL 235

Query: 246 IVVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
            V+SFHSLEDR+VK+F   +  G    V   I        F+ +  K V P   ++  N 
Sbjct: 236 AVISFHSLEDRIVKQFMRDKEQGNRPPVEVPIKYEELKTNFKRVG-KAVKPQSSEIKENV 294

Query: 305 RSRSAKLRAGMR 316
           RSRSA LR G +
Sbjct: 295 RSRSAVLRIGEK 306


>gi|257888481|ref|ZP_05668134.1| methyltransferase [Enterococcus faecium 1,141,733]
 gi|257824535|gb|EEV51467.1| methyltransferase [Enterococcus faecium 1,141,733]
          Length = 319

 Score =  180 bits (456), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 115/306 (37%), Positives = 176/306 (57%), Gaps = 16/306 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H  V+L++ +  LN  P  V +D T G  G+S       S   ++ A D+D  A+   + 
Sbjct: 7   HYTVMLKETVDGLNIKPDGVYVDCTLGGAGHSEYLLSQLSSKGHLYAFDQDQKAIDHAKL 66

Query: 77  TMRDYKEQ--FSLFQATFSQLQD----YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +  Y EQ   +  +A F +L++    YV DK VDG+++DLGVSS Q+D  +RGFS+ + 
Sbjct: 67  RLASYVEQGMVTFIKANFRELEERLSEYV-DK-VDGILYDLGVSSPQLDEAERGFSYHQD 124

Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM  S  ++A  V+N+    +L +I    GEEK + +IA  I + R++ P QTT 
Sbjct: 125 APLDMRMDQSAPLTAYHVINEYPYHELVKIFFRYGEEKFSKQIAREIERVRKTKPIQTTG 184

Query: 190 DLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I++ +   ++    HPA R FQA+RI VN+E+      L  A + LK  G + V+
Sbjct: 185 ELVEIIKQVIPAPARRKGGHPAKRIFQAVRIAVNDELGAEETSLEQAIRLLKVNGRISVI 244

Query: 249 SFHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           +FHSLEDR+VK  F   S    +     +IP    P + + IT+K ++P++E++A N RS
Sbjct: 245 TFHSLEDRIVKSMFKEYSTVQDLPPGLPVIPDEFQPEL-KVITRKPILPSEEELAENNRS 303

Query: 307 RSAKLR 312
           RSAKLR
Sbjct: 304 RSAKLR 309


>gi|69244718|ref|ZP_00602982.1| methyltransferase [Enterococcus faecium DO]
 gi|257879362|ref|ZP_05659015.1| methyltransferase [Enterococcus faecium 1,230,933]
 gi|257881772|ref|ZP_05661425.1| methyltransferase [Enterococcus faecium 1,231,502]
 gi|257890188|ref|ZP_05669841.1| methyltransferase [Enterococcus faecium 1,231,410]
 gi|257893516|ref|ZP_05673169.1| methyltransferase [Enterococcus faecium 1,231,408]
 gi|260558804|ref|ZP_05830993.1| methyltransferase [Enterococcus faecium C68]
 gi|293553181|ref|ZP_06673818.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium E1039]
 gi|293560478|ref|ZP_06676970.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium E1162]
 gi|293568304|ref|ZP_06679628.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium E1071]
 gi|294621599|ref|ZP_06700764.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium U0317]
 gi|314937875|ref|ZP_07845191.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium TX0133a04]
 gi|314941366|ref|ZP_07848259.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium TX0133C]
 gi|314950125|ref|ZP_07853411.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium TX0082]
 gi|314951334|ref|ZP_07854388.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium TX0133A]
 gi|314992835|ref|ZP_07858236.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium TX0133B]
 gi|314997995|ref|ZP_07862890.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium TX0133a01]
 gi|68196309|gb|EAN10738.1| methyltransferase [Enterococcus faecium DO]
 gi|257813590|gb|EEV42348.1| methyltransferase [Enterococcus faecium 1,230,933]
 gi|257817430|gb|EEV44758.1| methyltransferase [Enterococcus faecium 1,231,502]
 gi|257826548|gb|EEV53174.1| methyltransferase [Enterococcus faecium 1,231,410]
 gi|257829895|gb|EEV56502.1| methyltransferase [Enterococcus faecium 1,231,408]
 gi|260075263|gb|EEW63576.1| methyltransferase [Enterococcus faecium C68]
 gi|291589016|gb|EFF20840.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium E1071]
 gi|291598764|gb|EFF29816.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium U0317]
 gi|291602591|gb|EFF32806.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium E1039]
 gi|291605626|gb|EFF35068.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium E1162]
 gi|313588007|gb|EFR66852.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium TX0133a01]
 gi|313592639|gb|EFR71484.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium TX0133B]
 gi|313596551|gb|EFR75396.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium TX0133A]
 gi|313599789|gb|EFR78632.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium TX0133C]
 gi|313642733|gb|EFS07313.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium TX0133a04]
 gi|313643566|gb|EFS08146.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium TX0082]
          Length = 319

 Score =  180 bits (456), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 111/304 (36%), Positives = 174/304 (57%), Gaps = 12/304 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H  V+L++ +  LN  P  V +D T G  G+S       S   ++ A D+D  A+   + 
Sbjct: 7   HYTVMLKETVDGLNIKPDGVYVDCTLGGAGHSEYLLSQLSSKGHLYAFDQDQKAIDHAKL 66

Query: 77  TMRDYKEQ--FSLFQATFSQLQDYVPDK--GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            +  Y EQ   +  +A F +L++ + +    VDG+++DLGVSS Q+D  +RGFS+ +  P
Sbjct: 67  RLASYVEQGMVTFIKANFRELEERLSEHVDKVDGILYDLGVSSPQLDEAERGFSYHQDAP 126

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S  +SA  V+N+ +  +L +I    GEEK + +IA  I + R++ P QTT +L
Sbjct: 127 LDMRMDQSAPLSAYHVINEYSYHELVKIFFRYGEEKFSKQIAREIERVRKTKPIQTTGEL 186

Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I++ +   ++    HPA R FQA+RI VN+E+      L  A + LK  G + V++F
Sbjct: 187 VEIIKQVIPAPARRKGGHPAKRIFQAVRIAVNDELGAEEASLEQAIRLLKVNGRISVITF 246

Query: 251 HSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+VK  F   S    +     +IP    P + + IT+K ++P++E++  N RSRS
Sbjct: 247 HSLEDRIVKSMFKEYSTVQDLPPGLPVIPDEFQPEL-KVITRKPILPSEEELTENNRSRS 305

Query: 309 AKLR 312
           AKLR
Sbjct: 306 AKLR 309


>gi|254787005|ref|YP_003074434.1| S-adenosyl-methyltransferase MraW [Teredinibacter turnerae T7901]
 gi|262825811|sp|C5BP42|RSMH_TERTT RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|237684519|gb|ACR11783.1| SAM-dependent methyltransferase MraW [Teredinibacter turnerae
           T7901]
          Length = 311

 Score =  180 bits (456), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 116/315 (36%), Positives = 184/315 (58%), Gaps = 20/315 (6%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           M+  IH+++     +L E V AL+  A G V +D TFG GG+SR+  +  S    ++A D
Sbjct: 1   MTQEIHYSV-----LLKESVDALVTNADG-VYIDGTFGRGGHSRAVLQKLSPQGRLLAFD 54

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP------DKGVDGVVFDLGVSSMQID 119
           +DP AV+ G+E +     +FS+   +F  +  +        +  + GV+ DLGVSS Q+D
Sbjct: 55  KDPEAVAYGRE-LAGSDNRFSMVHDSFVNMASHWASAAHANNWSLSGVLLDLGVSSPQLD 113

Query: 120 CGDRGFSFQKSGPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178
             +RGFSF   GPLDMRM + SG +A++ +N A   +L  ++   GEE+ A R+A AIV 
Sbjct: 114 QAERGFSFMHDGPLDMRMDNSSGQTAAEWINTAEESELAFVIKEYGEERFARRMARAIVA 173

Query: 179 RRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
            R+ +P   T  L++++ +     +  + HPATR+FQA+RIF+N E+++L   L  + + 
Sbjct: 174 EREKSPITQTLRLANIVSEANPKWEKGK-HPATRAFQAIRIFINRELDDLTATLAQSLEM 232

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297
           L +GG L+V+SFHSLEDR+VK+F   ++ GK   +   +  +      +++ K      +
Sbjct: 233 LPSGGRLVVISFHSLEDRIVKRFMRDQARGKQFPIGMPVTEDMLEKKLKTLGKAQRAGDR 292

Query: 298 EDVAFNRRSRSAKLR 312
           E +A N RSRSA LR
Sbjct: 293 E-LAENIRSRSATLR 306


>gi|187934997|ref|YP_001886637.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum B str.
           Eklund 17B]
 gi|263446060|sp|B2TS30|RSMH_CLOBB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|187723150|gb|ACD24371.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum B str.
           Eklund 17B]
          Length = 310

 Score =  180 bits (456), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 110/303 (36%), Positives = 173/303 (57%), Gaps = 12/303 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+ VLL + +  L+     + +D T G  G+S    +  SN   +I +D+D  A+   +E
Sbjct: 5   HISVLLNECLDALDIKDNGIYVDCTLGGAGHSSHILERLSNEGLLIGIDQDRDALKAAKE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++ + E      + F  + + + +     VDG++ DLGVSS Q+D G RGFS+ K  PL
Sbjct: 65  RLKRF-ENVKYVHSNFYDIDNILQNLDIPKVDGILMDLGVSSYQLDEGARGFSYMKDAPL 123

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  +  SA ++VN+ +  +L +I+   GEE+ A RI++ IV RR   P +TT +L 
Sbjct: 124 DMRMNRDNDFSAYEIVNEYSEDELYKIIRNYGEERFAKRISNCIVNRRSDKPIETTMELV 183

Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  +   ++    HPA R+FQA+RI VN+E++ L Q +      LK GG + +++FH
Sbjct: 184 DIIKAAIPAKARREGPHPAKRTFQAIRIEVNSELKILNQTIEDGVNRLKPGGRMAIITFH 243

Query: 252 SLEDRLVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK  F   +      R   M      P+V + I++K + PT+E+V  N RSRSA
Sbjct: 244 SLEDRIVKLKFRELNDPCTCPREFPMCICGKKPSV-RLISRKGIEPTKEEVEENPRSRSA 302

Query: 310 KLR 312
           KLR
Sbjct: 303 KLR 305


>gi|268319710|ref|YP_003293366.1| S-adenosyl-methyltransferase MraW [Lactobacillus johnsonii FI9785]
 gi|262398085|emb|CAX67099.1| S-adenosyl-methyltransferase MraW [Lactobacillus johnsonii FI9785]
          Length = 340

 Score =  180 bits (456), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 112/309 (36%), Positives = 177/309 (57%), Gaps = 15/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77
           H  VLL + I  LNP  G + +DATFG GG++R          VI  D+D +A+S  +E+
Sbjct: 30  HKSVLLHETIDNLNPKDGGLYVDATFGGGGHARYLLSKLNKGTVIGFDQDEYAISMAKES 89

Query: 78  MRDY-----KEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
                    + +  L    F  L++ + +     G+DG+ +DLGVSS Q D  +RGFS++
Sbjct: 90  FAKELQVGAEPRLMLVHDNFCHLKENLVELGISDGIDGIYYDLGVSSPQFDQPERGFSYR 149

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
               LDMRM  S  + A  +VN  + K+L+ +L   G+EK + +IA  IV RR+  P  T
Sbjct: 150 FDARLDMRMDQSQELDAYTMVNTWSQKELSDVLYKYGDEKFSRQIARKIVDRRKEKPIVT 209

Query: 188 TQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T DL  +I+  +  +++ +  HPA +SFQA+R+ VNNE+  L + L  A K LK GG + 
Sbjct: 210 TFDLVDVIKDAIPAYARRSGGHPAKKSFQAIRVAVNNELVVLQESLEEAIKLLKPGGRIS 269

Query: 247 VVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           V++F S ED++VKK F   S  ++     M+P+++ P + + I++K ++ + +++  N R
Sbjct: 270 VITFQSHEDKIVKKIFKKYSEVEIPRGMPMVPADSKPTL-RLISRKPIMASSDELEENNR 328

Query: 306 SRSAKLRAG 314
           S SAKLR  
Sbjct: 329 SHSAKLRVA 337


>gi|82703617|ref|YP_413183.1| methyltransferase [Nitrosospira multiformis ATCC 25196]
 gi|123543903|sp|Q2Y630|RSMH_NITMU RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|82411682|gb|ABB75791.1| methyltransferase [Nitrosospira multiformis ATCC 25196]
          Length = 316

 Score =  180 bits (456), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 119/314 (37%), Positives = 176/314 (56%), Gaps = 21/314 (6%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCG 74
           G H  VLL++ +  L   P  + +D TFG GG+SR    ++G N  +IA DRDP A + G
Sbjct: 5   GKHTTVLLQEAVEALALKPDGIYVDGTFGRGGHSRLILERLGKNGRLIAFDRDPVACAVG 64

Query: 75  QETMRDY-KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130
               R +  E+F +  +++S+LQ+ +    +   DGV+ DLGVSS Q++   RGFSF   
Sbjct: 65  ----RSFGDERFCMVHSSYSRLQEVLRQLNIGQIDGVLLDLGVSSPQLEEATRGFSFSME 120

Query: 131 GPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
           GPLDMRM +  G +A+  +  A+   L  ++   GEE+ A +IA AIVK R   P  TT 
Sbjct: 121 GPLDMRMDTTEGQTAAQWLASASEVQLEEVIKEYGEERFAKQIARAIVKARARQPLVTTS 180

Query: 190 DLSSLIQKTVYFSKNN-RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L++++   +       + +PATR+FQA+RI++N E+E L+  L    + LK GG L+V+
Sbjct: 181 QLAAIVAAAIPARAREPKQNPATRTFQAIRIYLNQELERLSLALPQCVEMLKTGGRLVVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHP------AVFQSITKKVVVPTQEDVAF 302
           SFHSLEDR+VK+F    +      +H+ P  A        A  Q +  K V P   +V  
Sbjct: 241 SFHSLEDRIVKRFIREGANTDKLPKHL-PLRADEVRRFSRASLQ-MVGKAVRPGVAEVEC 298

Query: 303 NRRSRSAKLRAGMR 316
           N R+RSA +R   R
Sbjct: 299 NPRARSAVMRVAER 312


>gi|325202777|gb|ADY98231.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis
           M01-240149]
          Length = 316

 Score =  180 bits (456), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 112/287 (39%), Positives = 164/287 (57%), Gaps = 10/287 (3%)

Query: 39  VILDATFGAGGYSR-SFCKMG--SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95
           V +D TFG GG+SR    ++G    +I  D+DP A++  +E  R  K +  +    F+  
Sbjct: 16  VYVDGTFGRGGHSRLILSRLGDAGRLIVFDKDPQAIAVAEELARSDK-RVGVVHGGFASF 74

Query: 96  QDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQA 151
           Q  +   G   VDG +FDLG+SS QID G RGFSF+   PLDMRM  + G+SA++ +  A
Sbjct: 75  QTALDGLGIGKVDGALFDLGISSPQIDDGSRGFSFRFDAPLDMRMDTTRGMSAAEWIAVA 134

Query: 152 NVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPAT 211
           + +DL  ++   GEE+ + +IA AIV +R  +P  TT+ L+ ++ + V   +  +  PAT
Sbjct: 135 SEQDLHEVIKNYGEERFSRQIARAIVAQRAESPIDTTRKLAQIVAQNVRTRERGQ-DPAT 193

Query: 212 RSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMA 271
           R+FQA+RIF+N E+EE+   L      LK GG L V++FHSLEDR+VK+F    S     
Sbjct: 194 RTFQAIRIFINRELEEVGAVLPQVMCRLKEGGRLAVIAFHSLEDRIVKQFVKKYSQHAPL 253

Query: 272 VRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
            R      A  P     I  + + P + ++A N R+RSA LR   RT
Sbjct: 254 PRWAAVREADLPEPPLKIAGRALKPGEAEIAANPRARSAVLRVAERT 300


>gi|110639131|ref|YP_679340.1| S-adenosyl-methyltransferase MraW [Cytophaga hutchinsonii ATCC
           33406]
 gi|122966614|sp|Q11RG6|RSMH_CYTH3 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|110281812|gb|ABG59998.1| S-adenosylmethionine methyltransferase [Cytophaga hutchinsonii ATCC
           33406]
          Length = 298

 Score =  180 bits (456), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 113/303 (37%), Positives = 169/303 (55%), Gaps = 14/303 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77
           HVPVLL++ +  LN  P  + +D TFG GG+SR   K   G  + A D+D  AV   ++ 
Sbjct: 3   HVPVLLKESVEGLNINPEGIYVDVTFGGGGHSREILKHLKGGKLYAFDQDADAVDNAKDL 62

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +      F+L  A F  ++ Y+   GVD   G++ DLG+SS QID  +RGFS +   PLD
Sbjct: 63  I---GPNFTLIPANFRYIKKYLRLNGVDKVDGLLGDLGISSHQIDTPERGFSIRYDAPLD 119

Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM  +   +A+D++N+ +   L  ILG+ GE + A  +A A+VK R + P   T +L  
Sbjct: 120 MRMDRAIDKTAADIINKYSEHGLHSILGMYGEVRNAKTLAQALVKERINKPINRTSELIE 179

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           ++       K ++ +   + FQALRI VN E+E L   L  +++ LK+GG L ++S+HSL
Sbjct: 180 VLSDYAPRGKESKYY--AQVFQALRIEVNEELEALKDLLEQSQQVLKSGGRLSIISYHSL 237

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           EDRLVK F         A + +  +   P  F+S+  K + P  E+   N R+RSA+LR 
Sbjct: 238 EDRLVKNFVQQGKFHGDAEKDLYGNTNKP--FKSVG-KAIDPDDEEKERNNRARSARLRI 294

Query: 314 GMR 316
             R
Sbjct: 295 AER 297


>gi|330826599|ref|YP_004389902.1| ribosomal RNA small subunit methyltransferase H [Alicycliphilus
           denitrificans K601]
 gi|329311971|gb|AEB86386.1| Ribosomal RNA small subunit methyltransferase H [Alicycliphilus
           denitrificans K601]
          Length = 308

 Score =  180 bits (456), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 123/306 (40%), Positives = 174/306 (56%), Gaps = 16/306 (5%)

Query: 20  HVPVLL-EKVIALLN--PAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSC 73
           H  VL  E V ALL    AP    +D TFG GG++R    ++G+   ++A D+DP A+  
Sbjct: 7   HTTVLASEAVDALLGGAAAPVGTFVDGTFGRGGHARLILQRLGAQGRLVAFDKDPEAI-- 64

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             E  R +  +FS+    FS L + +P   V GV+ DLG+SS QID   RGFSF+  GPL
Sbjct: 65  -HEAARIHDARFSIQHQGFSHLGE-LPAASVAGVLLDLGISSPQIDDPARGFSFRFDGPL 122

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR-QSAPFQTTQDL 191
           DMRM  + G S ++ +  A    +  ++   GEE+ A  IA AIV RR Q  P   T +L
Sbjct: 123 DMRMDTTRGQSVAEWLAGAEAAQIAEVIRDYGEERFAGPIAKAIVARRTQGGPIVGTAEL 182

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++   V   +  + +PATR+FQA RIF+N E+EEL Q L ++   L  GG L+V+SFH
Sbjct: 183 ADIVAGAVKTREPGQ-NPATRTFQAFRIFINAELEELQQALEASLTVLAPGGRLVVISFH 241

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+VK+F A R  K M  R    +   P   +++ +  V P+  +V  N R+RSA +
Sbjct: 242 SLEDRIVKQFIA-RHSKEMFDRRAPFAAPTPMRLKALGR--VKPSAAEVVANPRARSAVM 298

Query: 312 RAGMRT 317
           R   RT
Sbjct: 299 RVAERT 304


>gi|312795053|ref|YP_004027975.1| S-adenosyl-methyltransferase mraW [Burkholderia rhizoxinica HKI
           454]
 gi|312166828|emb|CBW73831.1| S-adenosyl-methyltransferase mraW (EC 2.1.1.-) [Burkholderia
           rhizoxinica HKI 454]
          Length = 317

 Score =  179 bits (455), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 125/324 (38%), Positives = 188/324 (58%), Gaps = 22/324 (6%)

Query: 9   MSSAIHHTIGDHVPVLL-EKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIAL 64
           M+SA+    G H  VLL E V AL+  A G + +D TFG GG+SR+        + +IA 
Sbjct: 1   MASAMEKP-GQHRTVLLDEAVDALITRADG-IYVDGTFGRGGHSRAVLARLAPAARLIAF 58

Query: 65  DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCG 121
           D+DP A+   +        + ++   +F+QL+D +  +G   V GV+ DLGVSS QID  
Sbjct: 59  DKDPQAIEVARGIA---DPRLNVVHGSFAQLRDVLAARGGVRVSGVLLDLGVSSPQIDDP 115

Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
            RGFSF+  GPLDMRM  + G SA+  +   + ++L  ++   GEE+ A +IA AIV RR
Sbjct: 116 ARGFSFRHDGPLDMRMDPTRGESAAQWLAHVDERELIEVIRDYGEERFAVQIAKAIVARR 175

Query: 181 QSA----PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236
             +    P   T++L+ ++ + V   +  +  PATR+FQA+RI +N E+ EL   L +A 
Sbjct: 176 AESGRLGPIVRTRELAEIVARAVKTREKGQ-DPATRTFQAIRIHINQELAELPVVLETAL 234

Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH--PAVFQSITKKVVV 294
           ++L+ GG L+V+SFHSLEDR+VK+FF S + +  AV   +P  A   P+    I  +V  
Sbjct: 235 ESLEQGGRLVVISFHSLEDRIVKRFFQSHA-RAPAVDRRLPIRAADLPSPPLRILGRVFA 293

Query: 295 PTQEDVAFNRRSRSAKLRAGMRTV 318
             + +VA N R+RSA +R   R +
Sbjct: 294 -GEAEVAANPRARSAVMRIAERVL 316


>gi|148360438|ref|YP_001251645.1| S-adenosylmethyl transferase MraW [Legionella pneumophila str.
           Corby]
 gi|263456280|sp|A5IFZ9|RSMH_LEGPC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|148282211|gb|ABQ56299.1| S-adenosylmethyl transferase MraW [Legionella pneumophila str.
           Corby]
 gi|307609707|emb|CBW99217.1| hypothetical protein LPW_09981 [Legionella pneumophila 130b]
          Length = 308

 Score =  179 bits (455), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 118/312 (37%), Positives = 172/312 (55%), Gaps = 18/312 (5%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSC 73
           +  H  VLL + I  L      +  D TFG GG+SR      S+   + A+D+D  AV  
Sbjct: 1   MAKHQSVLLHESIKGLAIKADGIYFDGTFGRGGHSREILNHLSDKGRLFAIDKDLDAV-- 58

Query: 74  GQETMRDY---KEQFSLFQATFSQLQDYVPDKGV----DGVVFDLGVSSMQIDCGDRGFS 126
             +  +DY    ++F +F  +F+Q++++    GV    DG++ DLGVSS Q+D  +RGFS
Sbjct: 59  --QYAKDYFGLDKRFQIFHGSFAQIKEFASQAGVIGAVDGILLDLGVSSPQLDNPERGFS 116

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           F   GPLDMRM  +  I+A++ VN+A V +L  +    GEE+ A RIA AIV  R+  P 
Sbjct: 117 FMLQGPLDMRMDLTQSINAANFVNEAEVNELAHVFRAYGEERFAGRIAKAIVDARKLKPI 176

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            TT +L+ ++++     + ++ HPATR FQA+RI VN E+ +L+  L      L   G L
Sbjct: 177 TTTLELAEIVKEANPKWEKHK-HPATRVFQAIRIHVNQELTDLSNCLEQCLDVLGPRGRL 235

Query: 246 IVVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
            V+SFHSLEDR+VK+F   +  G    V   I        F+ +  K V P   ++  N 
Sbjct: 236 AVISFHSLEDRIVKQFMRDKEQGNRPPVEVPIKYEELKTNFKRVG-KAVKPQSSEIKENV 294

Query: 305 RSRSAKLRAGMR 316
           RSRSA LR G +
Sbjct: 295 RSRSAVLRIGEK 306


>gi|116629844|ref|YP_815016.1| SAM-dependent methyltransferase for cell envelope biogenesis
           [Lactobacillus gasseri ATCC 33323]
 gi|238853964|ref|ZP_04644321.1| S-adenosyl-methyltransferase MraW [Lactobacillus gasseri 202-4]
 gi|311110516|ref|ZP_07711913.1| S-adenosyl-methyltransferase MraW [Lactobacillus gasseri MV-22]
 gi|122273218|sp|Q042P4|RSMH_LACGA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|116095426|gb|ABJ60578.1| SAM-dependent methyltransferase for cell envelope biogenesis
           [Lactobacillus gasseri ATCC 33323]
 gi|238833409|gb|EEQ25689.1| S-adenosyl-methyltransferase MraW [Lactobacillus gasseri 202-4]
 gi|311065670|gb|EFQ46010.1| S-adenosyl-methyltransferase MraW [Lactobacillus gasseri MV-22]
          Length = 315

 Score =  179 bits (455), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 114/311 (36%), Positives = 180/311 (57%), Gaps = 15/311 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMG-SNVIALDRDPFAVSCGQET 77
           H  VLL + I  LNP    + +DATFG GG++R    K+    VI  D+D +A+S  +E+
Sbjct: 5   HKSVLLHETIDNLNPKDDGLYVDATFGGGGHARYLLSKLNRGTVIGFDQDEYAISMAKES 64

Query: 78  MRDY-----KEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             +      + +  L    F  L++ + +     G+DG+ +DLGVSS Q D  +RGFS++
Sbjct: 65  FAEELKPGAEPKLILVHDNFCHLKENLVELGISDGIDGIYYDLGVSSPQFDQPERGFSYR 124

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
               LDMRM  S  + A  +VN  + K+L+ IL   G+EK + +IA  IV RR+  P  T
Sbjct: 125 FDARLDMRMDQSQELDAYTIVNTWSQKELSDILYKYGDEKFSRQIARKIVDRRREKPIVT 184

Query: 188 TQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T DL  +I+  +  +++ +  HPA +SFQA+R+ VNNE+  L + L  A K LK GG + 
Sbjct: 185 TFDLVDVIKDAIPAYARRSGGHPAKKSFQAIRVAVNNELGVLQESLEEAIKLLKPGGRIS 244

Query: 247 VVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           V++F S ED++VKK F   S  ++     MIP+++ P + + I++K ++ + +++  N R
Sbjct: 245 VITFQSHEDKIVKKIFKKYSEVEIPRGMPMIPADSKPTL-RLISRKPIMASSDELEENNR 303

Query: 306 SRSAKLRAGMR 316
           S SAKLR   +
Sbjct: 304 SHSAKLRVAEK 314


>gi|300858822|ref|YP_003783805.1| S-adenosyl-methyltransferase [Corynebacterium pseudotuberculosis
           FRC41]
 gi|300686276|gb|ADK29198.1| S-adenosyl-methyltransferase [Corynebacterium pseudotuberculosis
           FRC41]
 gi|302206527|gb|ADL10869.1| S-adenosyl-methyltransferase MraW [Corynebacterium
           pseudotuberculosis C231]
 gi|302331082|gb|ADL21276.1| S-adenosyl-methyltransferase MraW [Corynebacterium
           pseudotuberculosis 1002]
 gi|308276769|gb|ADO26668.1| S-adenosyl-methyltransferase MraW [Corynebacterium
           pseudotuberculosis I19]
          Length = 351

 Score =  179 bits (455), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 120/330 (36%), Positives = 182/330 (55%), Gaps = 28/330 (8%)

Query: 11  SAIHHTIGD---HVPVLLEKVIALLNPAP------GKVILDATFGAGGYSRSFCKM--GS 59
           SA ++ I D   HVPVL E++  L++ AP        VILD T GAGG+S  F +    +
Sbjct: 7   SAWNYDIRDNHGHVPVLRERMAELIS-APVIKMGTSAVILDGTLGAGGHSAFFLESFPEA 65

Query: 60  NVIALDRDPFAVSCGQETMRDYKEQF----SLFQATFSQLQDYVPD----------KGVD 105
            VI LDRD  +++  +E +  Y ++F    + F     +LQ +              G+ 
Sbjct: 66  CVIGLDRDLHSLNNARERLSIYGDRFLGIHTRFDHFLPKLQQHAEAGDEIALKALRHGIS 125

Query: 106 GVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILG 164
           G +FDLGVSSMQ+D  +RGF+++   PLDMRM  S GI+A+D++N  +  DL RIL + G
Sbjct: 126 GALFDLGVSSMQLDQAERGFAYRVDAPLDMRMDDSKGITAADILNTYSHGDLARILKVYG 185

Query: 165 EEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNN 223
           EE+ A +IA A+VK R+ APF  +  L  L+  T+   ++    HPA R+FQALRI VN 
Sbjct: 186 EERFAGKIASAVVKEREKAPFTHSARLVELLYATIPAATRRTGGHPAKRTFQALRIEVNK 245

Query: 224 EIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPA 283
           E+E +   L      L  GG  + +S+ SLED++VK++F   S         +      A
Sbjct: 246 ELESIENVLPVVTGCLAKGGRAVFMSYQSLEDKIVKRYFVDISTSKSPPGLPMDLPGMEA 305

Query: 284 VFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
            F+ +T+      ++++A N R+ S ++RA
Sbjct: 306 GFKVVTRGAEKANEQEIAENPRAASVRVRA 335


>gi|224024612|ref|ZP_03642978.1| hypothetical protein BACCOPRO_01339 [Bacteroides coprophilus DSM
           18228]
 gi|224017834|gb|EEF75846.1| hypothetical protein BACCOPRO_01339 [Bacteroides coprophilus DSM
           18228]
          Length = 304

 Score =  179 bits (455), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 112/301 (37%), Positives = 175/301 (58%), Gaps = 18/301 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDP--FAVSCGQET 77
           H+PVLLE+ I  +N  PG + +D TFG GG+S+   +       +D+D   F+    ++ 
Sbjct: 9   HIPVLLEESIDGMNIQPGGIYVDMTFGGGGHSKEILR------RMDKDSRLFSFDQDEDA 62

Query: 78  MRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            R+    E+F+  ++ F  L +++   GV   D ++ DLGVSS   D  +RGFSF+  G 
Sbjct: 63  ERNIVNDERFTFVRSNFRYLHNFLRYYGVEKVDAILADLGVSSHHFDDSERGFSFRFDGN 122

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+  +GI+A+D+VN    + L  +  + GE K + ++A  +VK R S    T  D 
Sbjct: 123 LDMRMNKRAGITAADIVNTYEEERLADLFYLYGELKNSRKLAATLVKARSSKKIVTIGDF 182

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             ++ K +Y  +  +   A + FQALRI VN E+E L + L +A +ALK GG L V+++H
Sbjct: 183 LDIV-KPLYGREREKKELA-KVFQALRIEVNQEMEALKEMLYAATEALKPGGRLSVITYH 240

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+VK    + + +  +V+    +   P  F+ +  KV+VPT+E++  N RSRSAKL
Sbjct: 241 SLEDRIVKNVMKTGNAEGKSVQDFYGNVQSP--FRLVNNKVIVPTEEEIIRNPRSRSAKL 298

Query: 312 R 312
           R
Sbjct: 299 R 299


>gi|254527132|ref|ZP_05139184.1| S-adenosyl-methyltransferase MraW [Prochlorococcus marinus str. MIT
           9202]
 gi|221538556|gb|EEE41009.1| S-adenosyl-methyltransferase MraW [Prochlorococcus marinus str. MIT
           9202]
          Length = 300

 Score =  179 bits (455), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 114/310 (36%), Positives = 176/310 (56%), Gaps = 42/310 (13%)

Query: 19  DHVPVLLEKVIALLNPAPGKVI-------LDATFGAGGYSRSFCKMGS--NVIALDRDPF 69
           +H  V+ +++IA L   P  +I       +DAT G GG+S +  +  S  N+I LD+DPF
Sbjct: 12  NHKSVMTDEIIASLEHYP--LIHNNQLKGIDATLGGGGHSFNLLRKYSELNIIGLDQDPF 69

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
           A     + +  +K +  +  + F+   D+VP + V  V+ DLGV+S QID   RGFSFQK
Sbjct: 70  ARISASKKLDKFKNRIDIRASNFA---DFVPKEKVSFVIADLGVNSNQIDDPKRGFSFQK 126

Query: 130 SGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI-VKRRQSAPFQT 187
            GPLDMRM+    + A  ++   N KDL  ++   G+E+ + +IA  I +  +++  +  
Sbjct: 127 DGPLDMRMNPLLEVDAEKLIEALNEKDLANLIYKYGDERLSRKIARKIKLDLKENGKYSG 186

Query: 188 TQDLSSLIQ-----KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           T++L+  I      K  Y     +IHPATR+FQALRI VN EIE L + L++  + L  G
Sbjct: 187 TKELAYSIAGCFPPKQRY----KKIHPATRTFQALRIAVNKEIEVLEKFLQAVPEWLLPG 242

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G++ ++SFHSLEDRLVK  F +                     +++TKK + P++++V F
Sbjct: 243 GIISIISFHSLEDRLVKSSFKNDQR-----------------LKNLTKKPITPSEQEVEF 285

Query: 303 NRRSRSAKLR 312
           N+R+RS KLR
Sbjct: 286 NKRARSGKLR 295


>gi|312866364|ref|ZP_07726582.1| S-adenosyl-methyltransferase MraW [Streptococcus downei F0415]
 gi|311098058|gb|EFQ56284.1| S-adenosyl-methyltransferase MraW [Streptococcus downei F0415]
          Length = 316

 Score =  179 bits (455), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 110/309 (35%), Positives = 179/309 (57%), Gaps = 14/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMG--SNVIALDRDPFAVSCGQE 76
           HV VLL + + +L P P  + +DAT G  G+S     K+G   ++   D+D  A+   Q 
Sbjct: 7   HVSVLLHETVDMLAPKPDGIYVDATLGGAGHSAYLLSKLGPKGHLYCFDQDQSAIDNAQV 66

Query: 77  TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            ++DY ++   +  +  F  L+  + ++GV   DG+++DLGVSS Q+D  +RGFS+++  
Sbjct: 67  KLKDYVDRGMVTFIKDNFRNLKADLAEEGVTQIDGILYDLGVSSPQLDQRERGFSYKQDA 126

Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+    +SA DVVN  + +DL +I    GE+K + +IA  I + R+S P +TT +
Sbjct: 127 PLDMRMNQEADLSAYDVVNTYSYQDLVKIFFKYGEDKFSKQIARKIEQARKSKPIETTTE 186

Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L+ +I K+   +K    + HPA + FQA+RI VN+E+    + ++ A + L   G + V+
Sbjct: 187 LTEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQALELLALDGRISVI 245

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F   S   V      IP    P +   + +K ++P+Q +++ N R+ 
Sbjct: 246 TFHSLEDRLTKQIFKEASSVDVPKGLPFIPEEMQPKI-ALVNRKPILPSQGELSVNNRAH 304

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 305 SAKLRVAKK 313


>gi|120609507|ref|YP_969185.1| S-adenosyl-methyltransferase MraW [Acidovorax citrulli AAC00-1]
 gi|263433318|sp|A1TKC3|RSMH_ACIAC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|120587971|gb|ABM31411.1| S-adenosyl-methyltransferase MraW [Acidovorax citrulli AAC00-1]
          Length = 311

 Score =  179 bits (455), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 118/300 (39%), Positives = 172/300 (57%), Gaps = 16/300 (5%)

Query: 26  EKVIALLN---PAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQETMR 79
           E V ALL    PAP  V +DATFG GG+SR    ++G +  ++A D+DP A+    E  R
Sbjct: 16  EAVDALLGGAGPAPAGVWIDATFGRGGHSRRILERLGPDGRLVAFDKDPEAI---HEAAR 72

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
               +FS+    F  L D +P++   G++ DLGVSS QID  +RGFSF+  GPLDMRM  
Sbjct: 73  ITDARFSIRHEGFRHLAD-LPERSAAGILMDLGVSSPQIDSPERGFSFRFDGPLDMRMDT 131

Query: 140 S-GISASDVVNQANVKDLTRILGILGEEKQAS-RIAHAIVKRRQSAPFQTTQDLSSLIQK 197
           + G S +D +  A+V  +  ++   GEE+ A         +R +  P +TT +L+ L+  
Sbjct: 132 TRGESVADWLATADVGQIAEVIREYGEERFAGPIAKAIAARRAERGPLRTTSELAQLVAG 191

Query: 198 TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRL 257
            V   +  + +PATR+FQALRIF+N E+EEL   L ++ + L  GG L V+SFHSLEDR+
Sbjct: 192 AVKTREAGQ-NPATRTFQALRIFINAELEELQAALEASLRVLAPGGRLAVISFHSLEDRI 250

Query: 258 VKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           VK+F A  S +V   R    +   P   +++ +  + P   +V  N R+RSA +R   RT
Sbjct: 251 VKQFIAQHSREVYDRRAPF-AAPQPMRLKALDR--IKPGACEVDANPRARSAVMRVAERT 307


>gi|269127144|ref|YP_003300514.1| S-adenosyl-methyltransferase MraW [Thermomonospora curvata DSM
           43183]
 gi|268312102|gb|ACY98476.1| S-adenosyl-methyltransferase MraW [Thermomonospora curvata DSM
           43183]
          Length = 337

 Score =  179 bits (455), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 104/298 (34%), Positives = 170/298 (57%), Gaps = 14/298 (4%)

Query: 20  HVPVLLEKVIALLNPA----PG---KVILDATFGAGGYSRSFCKMGSNV--IALDRDPFA 70
           H+PVLL++V++LL PA    P     + +DAT G GG++ +  +    +  I LDRDP A
Sbjct: 12  HIPVLLDRVLSLLAPAVESAPAGRDPLYVDATLGMGGHAEAMLQAHPRLRLIGLDRDPSA 71

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSF 127
           +      +  + ++  L  A + +L   + + G    + ++FDLGVSS Q+D  +RGF++
Sbjct: 72  IERAGRRLARFADRVRLVHAVYDELPRVLAELGEPHAEAILFDLGVSSPQLDEAERGFAY 131

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
               PLDMRM  +  ++A+DVVN    ++L RIL   GEE+ A RIA AI + R+ AP +
Sbjct: 132 SYDAPLDMRMDPTQPLTAADVVNGYPPEELARILREYGEERHARRIAAAIERERRRAPLR 191

Query: 187 TTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           +T  L+ L+++ +   ++ +  +PA R+FQALRI VN E+    + L +A +AL  GG +
Sbjct: 192 STGRLAELVRQAIPAPARRSGGNPAKRTFQALRIEVNGELAIWERALPAALQALPVGGRV 251

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            V+S+HSLEDR+ K+   + S         +    H   F+ +T+    P +E++  N
Sbjct: 252 AVLSYHSLEDRITKRVLTACSTDTTPPGLPVSLPEHRPTFRLLTRGAETPGEEEITAN 309


>gi|38234181|ref|NP_939948.1| S-adenosyl-methyltransferase MraW [Corynebacterium diphtheriae NCTC
           13129]
 gi|42559424|sp|P60395|RSMH_CORDI RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|38200443|emb|CAE50131.1| Conserved hypothetical protein [Corynebacterium diphtheriae]
          Length = 339

 Score =  179 bits (455), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 113/319 (35%), Positives = 177/319 (55%), Gaps = 27/319 (8%)

Query: 20  HVPVLLEKVIALLNP-----APGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVS 72
           HVPVL  ++  L+ P         VI+D T GAGG+S+ F +    + VI LDRD  +++
Sbjct: 19  HVPVLRARMAELIAPKVTAMGSDAVIIDGTLGAGGHSKYFLESFPEARVIGLDRDTNSLA 78

Query: 73  CGQETMRDYKEQFSLFQATFSQL--------QDYVP------DKGVDGVVFDLGVSSMQI 118
             +E ++++ ++F      F +         Q   P      ++G+ G +FDLGVSSMQ+
Sbjct: 79  SARERLKEFGDRFLGIHTRFDRFAPKLEELAQSGNPIAATALEQGISGALFDLGVSSMQL 138

Query: 119 DCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177
           D  +RGF+++   PLDMRM  + GI+A+DV+N  +  +L RIL   G+E+ A +IA AIV
Sbjct: 139 DQAERGFAYRVDAPLDMRMDNTIGITAADVLNTYSHGELARILKTYGDERFAGKIASAIV 198

Query: 178 KRRQSAPFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236
           + R+  PF T+  L  L+  T+   ++    HPA R+FQALRI VN E+E L   L    
Sbjct: 199 REREKEPFDTSARLVELLYATIPAATRRTGGHPAKRTFQALRIEVNRELESLENVLPEIT 258

Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVVV 294
           + L  GG  + +S+ SLED++VK++F   S S     +   +P  A    F+ +T+    
Sbjct: 259 QRLTTGGRAVFMSYQSLEDKIVKRYFVDISTSKTPPGLPMELPEYA--PKFKVVTRGAEK 316

Query: 295 PTQEDVAFNRRSRSAKLRA 313
            T  ++  N R+ S ++RA
Sbjct: 317 ATDAEIEENPRAASVRVRA 335


>gi|331265736|ref|YP_004325366.1| S-adenosyl-methyltransferase [Streptococcus oralis Uo5]
 gi|326682408|emb|CBZ00025.1| S-adenosyl-methyltransferase [Streptococcus oralis Uo5]
          Length = 316

 Score =  179 bits (455), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 110/309 (35%), Positives = 177/309 (57%), Gaps = 14/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           HV VLL + I +L+  P  + +DAT G  G+S       S   ++ A D+D  A+   Q+
Sbjct: 7   HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y  KE  +  +  F  LQ  + + GV   DG+ +DLGVSS Q+D  +RGFS++K  
Sbjct: 67  RLAPYIEKEMVTFIKDNFRHLQARLQEAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+  + ++A +VVN  +  DL RI    GE+K + ++A  I + R+  P +TT +
Sbjct: 127 PLDMRMNQEASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQVARKIEQARELKPIETTTE 186

Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L+ +I K+   +K    + HPA + FQA+RI VN+E+    + ++ A + L   G + V+
Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMELLAVDGRISVI 245

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F   S  ++      IP    P + + +++K ++P++E++  N RS 
Sbjct: 246 TFHSLEDRLTKQLFKEASTVEIPKGLPFIPDELKPKM-ELVSRKPILPSKEELEANNRSH 304

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 305 SAKLRVARK 313


>gi|295102284|emb|CBK99829.1| S-adenosyl-methyltransferase MraW [Faecalibacterium prausnitzii
           L2-6]
          Length = 322

 Score =  179 bits (455), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 113/304 (37%), Positives = 172/304 (56%), Gaps = 12/304 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-----KMGSNVIALDRDPFAVSC 73
           +H+PVLL + +  LN  P    LD T G  G+SR          G  +++LD+DP AV  
Sbjct: 16  EHIPVLLNECLDGLNIDPAGTYLDGTAGGAGHSRQIALRLDGAKGGRLVSLDQDPDAVQT 75

Query: 74  GQETMRDYKEQFSLFQATF---SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +  +       ++ Q  F    Q  + +  + ++G + DLGVSS Q+D   RGFS++  
Sbjct: 76  ARARLAGLPA--TVVQINFRYAGQALESLGIEKINGALLDLGVSSHQLDDAARGFSYRAD 133

Query: 131 GPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            PLDMRMS  G +A+D+VN A+ ++L+RIL   GEE  A +IA  IV+ R++AP +TT  
Sbjct: 134 APLDMRMSQQGETAADLVNTASREELSRILRDYGEEPYAWQIAGRIVEARETAPIETTLQ 193

Query: 191 LSSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ ++   +  ++  +  +P+ R+FQALRI VN+E++ L +GL +    L  GG L V++
Sbjct: 194 LADIVAGAMPPAERRKNKNPSRRTFQALRIAVNHELDALEEGLDTIFDHLAPGGRLCVIT 253

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDRLVK  F   S          +      A  + IT+K +   ++++  NRRSRS
Sbjct: 254 FHSLEDRLVKNKFRRWSTACTCPPEFPVCVCGGKAKAKLITRKPIEADKQELEENRRSRS 313

Query: 309 AKLR 312
           A LR
Sbjct: 314 AHLR 317


>gi|56964129|ref|YP_175860.1| S-adenosyl-methyltransferase MraW [Bacillus clausii KSM-K16]
 gi|115311580|sp|Q5WFG1|RSMH_BACSK RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|56910372|dbj|BAD64899.1| S-adenosyl-methyltransferase MraW [Bacillus clausii KSM-K16]
          Length = 314

 Score =  179 bits (455), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 111/303 (36%), Positives = 168/303 (55%), Gaps = 11/303 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H+ VL E+ +  L   PG V +D T G GG+S           ++ A D+D  A+S   E
Sbjct: 4   HITVLKEESVNGLAVKPGGVYVDCTLGGGGHSERILTALAGEGHLYAFDQDEAALSFAAE 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  +KE  +  ++ F  +++ +  +GVD   G++FDLGVSS Q+D   RGFS+ +  PL
Sbjct: 64  KLSRFKENITFIRSNFRHIKEELRMRGVDKVDGILFDLGVSSPQLDEASRGFSYHQDAPL 123

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  S  ++A +VVN      L  I+   GEEK + +IA  I   R   P +TT +L 
Sbjct: 124 DMRMDQSASLTAREVVNTWPFAKLHSIISRYGEEKFSKQIARKIEAYRLKQPIETTGELV 183

Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I++ +   ++    HPA R+FQA+RI VN+E+      L    + L  GG + V++FH
Sbjct: 184 DIIKEAIPAPARRAGGHPAKRTFQAIRIAVNDELGAFEDALTDGFELLNEGGRMAVITFH 243

Query: 252 SLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDRL K+ F  ++    +     +IP++   A F  ITKK +V   E++  N R+RSA
Sbjct: 244 SLEDRLCKQMFKEKTKLPDLPKGLPIIPAD-QKAPFALITKKPIVANDEEIKANNRARSA 302

Query: 310 KLR 312
           KLR
Sbjct: 303 KLR 305


>gi|313637016|gb|EFS02589.1| S-adenosyl-methyltransferase MraW [Listeria seeligeri FSL S4-171]
          Length = 312

 Score =  179 bits (455), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 105/303 (34%), Positives = 172/303 (56%), Gaps = 11/303 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VLL + + +L   P  + +DAT G  G+S           ++ A D+D  A+   + 
Sbjct: 4   HETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDNAKI 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  Y ++ +  ++ F  +++ + + G   VDG+++DLGVSS Q+D  +RGFS+ +   L
Sbjct: 64  KLAAYSDKVTFVKSNFRYMKEALNEHGISEVDGILYDLGVSSPQLDERERGFSYHQDAAL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     ++A  VVN+ + +DL RI    GEEK + +IA  I +RR+  P +TT +L 
Sbjct: 124 DMRMDREQELTAKIVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTGELV 183

Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  +   ++    HP  R+FQA+RI VN+E+  +   L  A   +K GG + V++FH
Sbjct: 184 DIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLIKPGGRISVITFH 243

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+ K  F  A++   +     +IP    P  F+  T+K +VP++E++  N R+RSA
Sbjct: 244 SLEDRITKHLFQEATKGPDLPPGLPVIPDEYKPD-FKLATRKPIVPSEEELEQNNRARSA 302

Query: 310 KLR 312
           KLR
Sbjct: 303 KLR 305


>gi|256372032|ref|YP_003109856.1| S-adenosyl-methyltransferase MraW [Acidimicrobium ferrooxidans DSM
           10331]
 gi|256008616|gb|ACU54183.1| S-adenosyl-methyltransferase MraW [Acidimicrobium ferrooxidans DSM
           10331]
          Length = 319

 Score =  179 bits (455), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 114/299 (38%), Positives = 174/299 (58%), Gaps = 16/299 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETM 78
           H+PV++ +V+  + P  G+ +LD T G GG++ +    G+  VI LDRDP A+      +
Sbjct: 6   HLPVMVAEVVRAVEPQ-GRRVLDVTVGLGGHAAALLDAGAALVIGLDRDPEALHLAARRL 64

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138
             + ++F   + TF  L   V  + +D V+ DLGVSS+Q+D   RGFSF+ +GPLDMRM 
Sbjct: 65  EAFGDRFEPVRGTFRDLARVVGARRIDAVIADLGVSSLQLDHAQRGFSFRLAGPLDMRMD 124

Query: 139 CSG-ISASDVVNQANVKDLTRIL--GILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
                SA+ ++   +   LT +L  G +G    A R A AI+    + P  T Q    ++
Sbjct: 125 PEAPTSAASLLASLDEDGLTELLRRGEVG--PLARRYARAILA---AMPTTTEQLAEVVV 179

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           + T    +  R HPAT  FQALR+ VN+E+ +L   L +A +AL+ GG+L V+++HSLED
Sbjct: 180 EATPPSRRTTRRHPATLVFQALRLAVNDELGQLTALLPAAFEALEVGGVLAVLTYHSLED 239

Query: 256 RLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           RLVK+FF  A R G         P+ +  +V +   ++ VVP+ ++VA N R+RSA+LR
Sbjct: 240 RLVKRFFEVAERGGAP----RTTPAGSWTSVLERRPRRGVVPSDDEVARNPRARSARLR 294


>gi|329118760|ref|ZP_08247458.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Neisseria
           bacilliformis ATCC BAA-1200]
 gi|327465107|gb|EGF11394.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Neisseria
           bacilliformis ATCC BAA-1200]
          Length = 316

 Score =  179 bits (455), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 120/309 (38%), Positives = 173/309 (55%), Gaps = 16/309 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDP-FAVSCGQ 75
           HV VLL + +  L      V +D TFG GG+SR     +G+N  ++  D+DP    +  +
Sbjct: 8   HVSVLLHEAVDALAVVSDGVYVDGTFGRGGHSRLILSHLGANGRLVVFDKDPQAVAAARE 67

Query: 76  ETMRDYK-----EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
              +D +     + FS FQ       D +    +DG +FDLG+SS QID G RGFSF+  
Sbjct: 68  LAAQDGRVSVVHDGFSCFQTAL----DALNVGQIDGALFDLGISSPQIDDGSRGFSFRFD 123

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM  + G+SA++ +  A+  ++  ++   GEE+ A +IA AIV +R + P  TT 
Sbjct: 124 APLDMRMDTTRGMSAAEWLAAADEDEICEVIRNYGEERFARQIARAIVAQRGTNPIDTTG 183

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            L+ +  + V   +  +  PATR+FQA+RIF+N E+EE+A  L  A   LK+GG L V+S
Sbjct: 184 KLAQVAAQNVRTRERGQ-DPATRTFQAVRIFINRELEEIAAALPQAAGRLKSGGRLAVIS 242

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK+FF   S      R  M+     P    ++  K V  +  +VA N R+RS
Sbjct: 243 FHSLEDRIVKQFFRRHSEHEPLPRWAMVREADLPQPPLALVGKAVKASAAEVAANPRARS 302

Query: 309 AKLRAGMRT 317
           A LR   RT
Sbjct: 303 AVLRVARRT 311


>gi|282851645|ref|ZP_06261010.1| S-adenosyl-methyltransferase MraW [Lactobacillus gasseri 224-1]
 gi|282557613|gb|EFB63210.1| S-adenosyl-methyltransferase MraW [Lactobacillus gasseri 224-1]
          Length = 315

 Score =  179 bits (455), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 114/311 (36%), Positives = 180/311 (57%), Gaps = 15/311 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMG-SNVIALDRDPFAVSCGQET 77
           H  VLL + I  LNP    + +DATFG GG++R    K+    VI  D+D +A+S  +E+
Sbjct: 5   HKSVLLHETIDNLNPKDDGLYVDATFGGGGHARYLLSKLNRGTVIGFDQDEYAISMAKES 64

Query: 78  MRDY-----KEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             +      + +  L    F  L++ + +     G+DG+ +DLGVSS Q D  +RGFS++
Sbjct: 65  FAEELKPGAEPRLILVHDNFCHLKENLVELGISDGIDGIYYDLGVSSPQFDQPERGFSYR 124

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
               LDMRM  S  + A  +VN  + K+L+ IL   G+EK + +IA  IV RR+  P  T
Sbjct: 125 FDARLDMRMDQSQELDAYTIVNTWSQKELSDILYKYGDEKFSRQIARKIVDRRREKPIVT 184

Query: 188 TQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T DL  +I+  +  +++ +  HPA +SFQA+R+ VNNE+  L + L  A K LK GG + 
Sbjct: 185 TFDLVDVIKDAIPAYARRSGGHPAKKSFQAIRVAVNNELGVLQESLEEAIKLLKPGGRIS 244

Query: 247 VVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           V++F S ED++VKK F   S  ++     MIP+++ P + + I++K ++ + +++  N R
Sbjct: 245 VITFQSHEDKIVKKIFKKYSEVEIPRGMPMIPADSKPTL-RLISRKPIMASSDELEENNR 303

Query: 306 SRSAKLRAGMR 316
           S SAKLR   +
Sbjct: 304 SHSAKLRVAEK 314


>gi|255020004|ref|ZP_05292077.1| S-adenosyl-methyltransferase MraW [Acidithiobacillus caldus ATCC
           51756]
 gi|254970533|gb|EET28022.1| S-adenosyl-methyltransferase MraW [Acidithiobacillus caldus ATCC
           51756]
          Length = 324

 Score =  179 bits (455), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 117/311 (37%), Positives = 174/311 (55%), Gaps = 27/311 (8%)

Query: 20  HVPVLLEKVIALLNP---APG-KVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72
           H PVLL +V+A   P    PG ++ +DAT G GG+S +   +      ++ LDRDP A++
Sbjct: 11  HQPVLLAEVLAACTPLLGQPGPRLWVDATGGRGGHSAALAHLLGAQDRLLVLDRDPGAIA 70

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVF---DLGVSSMQIDCGDRGFSFQK 129
             +    +  E+ S+ QA FS++   + + G     F   DLGVSS Q+D  +RGFSF +
Sbjct: 71  FLRTRFAE-DERVSVRQAEFSRVAQVLAEMGTGQAQFILADLGVSSPQLDRPERGFSFLR 129

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM+   G+SA+  +  A   ++ ++L   GEE++A RIA AIV+ R   P   T
Sbjct: 130 DGPLDMRMNPEQGMSAAQWLATAEAAEIAQVLRDYGEEREARRIARAIVRERAVRPLTRT 189

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ L+   +  ++   IHPATR+FQA+R+ +N+E+ E+   L +A  +L   G L V+
Sbjct: 190 TQLAELVAGLLPRARAQAIHPATRTFQAIRMHINDELAEIRAFLPAAMDSLGPDGRLAVI 249

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP-------TQEDVA 301
           SFHSLEDRLVK+FF + + +        P    P     I +    P       + E+VA
Sbjct: 250 SFHSLEDRLVKRFFRADTRQ--------PDPDLPLRNWEIPEAPWFPLGRASRASTEEVA 301

Query: 302 FNRRSRSAKLR 312
            N R+RSA LR
Sbjct: 302 HNPRARSATLR 312


>gi|146328861|ref|YP_001209878.1| S-adenosyl-methyltransferase MraW [Dichelobacter nodosus VCS1703A]
 gi|167011832|sp|A5EY11|RSMH_DICNV RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|146232331|gb|ABQ13309.1| S-adenosyl-methyltransferase MraW [Dichelobacter nodosus VCS1703A]
          Length = 308

 Score =  179 bits (455), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 119/313 (38%), Positives = 177/313 (56%), Gaps = 25/313 (7%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQ 75
           +H+PVLL + +A L  AP    LDATFG GG+S     ++G +  + ALDRD  A +   
Sbjct: 5   EHIPVLLAEAVAALEIAPNGRYLDATFGRGGHSSEILAQLGESGQLYALDRDQQAAAVAA 64

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           +       +F   +  FS+++      G   +DG++FDLGVSS Q+D   RGFSF K GP
Sbjct: 65  QIT---DPRFHFARCAFSEMETAFAALGAESLDGILFDLGVSSPQLDDPSRGFSFAKEGP 121

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQ--ASRIAHAIVKRRQSAPFQTTQ 189
           LDMRM     ++A   +   +   LT ++   G E    A RIA AI+  +     ++T 
Sbjct: 122 LDMRMDNEQNLTAQKWLKNVDEDTLTTVIRDYGGEPHTVAKRIAKAILAAKND--LKSTL 179

Query: 190 DLSSLIQ----KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           DL+S++     K +Y      +HPAT++FQA+RI VN+EI E+ + LR+A   LK+GG+L
Sbjct: 180 DLASVVAQARPKKLY---KPHLHPATQTFQAIRIAVNDEIGEIQRALRAATMMLKSGGIL 236

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ--SITKKVVVPTQEDVAFN 303
           +V+SFH LED  VK+F  S  G+ +     IP+     + Q   +   V+ P+  ++A N
Sbjct: 237 VVISFHGLEDATVKRFVRSMEGEPLPAE--IPATNTTNIHQVLRLVPPVIKPSSAEIAQN 294

Query: 304 RRSRSAKLRAGMR 316
            RSRSAKLR  ++
Sbjct: 295 PRSRSAKLRKAVK 307


>gi|325203518|gb|ADY98971.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis
           M01-240355]
          Length = 316

 Score =  179 bits (454), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 112/287 (39%), Positives = 164/287 (57%), Gaps = 10/287 (3%)

Query: 39  VILDATFGAGGYSR-SFCKMG--SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95
           V +D TFG GG+SR    ++G    +I  D+DP A++  +E  R  K +  +    F+  
Sbjct: 16  VYVDGTFGRGGHSRLILSRLGDAGRLIVFDKDPQAIAVAEELARSDK-RVGVVHGGFASF 74

Query: 96  QDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQA 151
           Q  +   G   VDG +FDLG+SS QID G RGFSF+   PLDMRM  + G+SA++ +  A
Sbjct: 75  QTALDGLGIGKVDGALFDLGISSPQIDDGSRGFSFRFDAPLDMRMDTTRGMSAAEWIAVA 134

Query: 152 NVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPAT 211
           + +DL  ++   GEE+ + +IA AIV +R  +P  TT+ L+ ++ + V   +  +  PAT
Sbjct: 135 SEQDLHEVIKNYGEERFSRQIARAIVAQRAESPIDTTRKLAQIVAQNVRTRERGQ-DPAT 193

Query: 212 RSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMA 271
           R+FQA+RIF+N E+EE+   L      LK GG L V++FHSLEDR+VK+F    S     
Sbjct: 194 RTFQAVRIFINRELEEVGAVLPQVMCRLKEGGRLAVIAFHSLEDRIVKQFVKKYSQHAPL 253

Query: 272 VRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
            R      A  P     I  + + P + ++A N R+RSA LR   RT
Sbjct: 254 PRWAAVREADLPEPPLKIAGRALKPGEAEIAANPRARSAVLRVAERT 300


>gi|326315562|ref|YP_004233234.1| S-adenosyl-methyltransferase MraW [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gi|323372398|gb|ADX44667.1| S-adenosyl-methyltransferase MraW [Acidovorax avenae subsp. avenae
           ATCC 19860]
          Length = 311

 Score =  179 bits (454), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 117/300 (39%), Positives = 171/300 (57%), Gaps = 16/300 (5%)

Query: 26  EKVIALLN---PAPGKVILDATFGAGGYSRSFC-KMG--SNVIALDRDPFAVSCGQETMR 79
           E V ALL    P+P  V +DATFG GG+SR    ++G    ++A D+DP A+   QE  R
Sbjct: 16  EAVDALLGGAGPSPAGVWIDATFGRGGHSRRILERLGPQGRLVAFDKDPEAI---QEAAR 72

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
               +FS+    F  L + +P++   G++ DLGVSS QID   RGFSF+  GPLDMRM  
Sbjct: 73  ITDARFSIRHEGFRHLAE-LPERSAAGILMDLGVSSPQIDSPGRGFSFRFDGPLDMRMDT 131

Query: 140 S-GISASDVVNQANVKDLTRILGILGEEKQAS-RIAHAIVKRRQSAPFQTTQDLSSLIQK 197
           + G S +D +  A+V  +  ++   GEE+ A         +R +  P +TT +L+ L+  
Sbjct: 132 TRGESVADWLATADVGQIAEVIREYGEERFAGPIAKAIAARRAERGPLRTTSELAQLVAG 191

Query: 198 TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRL 257
            V   +  + +PATR+FQALRIF+N E+EEL   L ++ + L  GG L V+SFHSLEDR+
Sbjct: 192 AVKTREAGQ-NPATRTFQALRIFINAELEELQAALEASLRVLAPGGRLAVISFHSLEDRI 250

Query: 258 VKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           VK+F A  S +V   R    +   P   +++ +  + P   +V  N R+RSA +R   RT
Sbjct: 251 VKQFIAQHSKEVYDRRAPF-AAPQPMRLKALDR--IKPGASEVEANPRARSAVMRVAERT 307


>gi|157412528|ref|YP_001483394.1| S-adenosyl-methyltransferase MraW [Prochlorococcus marinus str. MIT
           9215]
 gi|262824943|sp|A8G2H7|RSMH_PROM2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|157387103|gb|ABV49808.1| Predicted S-adenosylmethionine-dependent methyltransferase
           [Prochlorococcus marinus str. MIT 9215]
          Length = 300

 Score =  179 bits (454), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 113/310 (36%), Positives = 177/310 (57%), Gaps = 42/310 (13%)

Query: 19  DHVPVLLEKVIALLNPAPGKVI-------LDATFGAGGYSRSFCKMGS--NVIALDRDPF 69
           +H  V+ ++++A L   P  +I       +DAT G GG+S +  +  S  N+I LD+DPF
Sbjct: 12  NHKSVMTDEIMASLEHYP--LIHNNQLKGIDATLGGGGHSFNLLRKYSELNIIGLDQDPF 69

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
           A     + + ++K +  +  + F+   D+VP + V  V+ DLGV+S QID   RGFSFQK
Sbjct: 70  ARISASKKLDEFKNRIDIRASNFA---DFVPKEKVSFVIADLGVNSNQIDDPKRGFSFQK 126

Query: 130 SGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI-VKRRQSAPFQT 187
            GPLDMRM+    + A  ++   N KDL  ++   G+E+ + +IA  I +  +++  +  
Sbjct: 127 DGPLDMRMNPLLEVDAEKLIEALNEKDLANLIYKYGDERLSRKIARKIKLDLKENGKYSG 186

Query: 188 TQDLSSLIQ-----KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           T++L+  I      K  Y     +IHPATR+FQALRI VN EIE L + L++  + L  G
Sbjct: 187 TKELAYSIAGCFPPKQRY----KKIHPATRTFQALRIAVNKEIEVLEKFLQAVPEWLLPG 242

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G++ ++SFHSLEDRLVK  F +                     +++TKK + P++++V F
Sbjct: 243 GIISIISFHSLEDRLVKSSFKNDQR-----------------LKNLTKKPITPSEQEVEF 285

Query: 303 NRRSRSAKLR 312
           N+R+RS KLR
Sbjct: 286 NKRARSGKLR 295


>gi|325519765|gb|EGC99070.1| 16S rRNA m(4)C1402 methyltranserfase [Burkholderia sp. TJI49]
          Length = 313

 Score =  179 bits (454), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 118/312 (37%), Positives = 180/312 (57%), Gaps = 21/312 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  V +D TFG GG+SR+       G  +IA D+DP A+   Q 
Sbjct: 7   HRTVLLDEAVESLVTRPDGVYVDGTFGRGGHSRAVLARLGPGGRLIAFDKDPRAIETAQG 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +FS+   +F+ ++D +  +GV+   GV+ DLGVSS Q+D   RGFSF+  GPL
Sbjct: 67  I---GDARFSIVHDSFASMRDALAARGVEKVSGVLLDLGVSSPQVDDPARGFSFRADGPL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTT 188
           DMRM  + G SA++ + +A++++LT ++   GEE+ A +IA A+V RR  +    P  +T
Sbjct: 124 DMRMDPTRGESAAEWLARASLQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDST 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ ++   V   +  +  PATR+FQA+RI VN E+ +L   L +A   L+ GG L+V+
Sbjct: 184 GELAQIVGHAVKTREKGK-DPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVI 242

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNRR 305
           SFHSLEDR+VK+F  + +    AV   +P  A      S   K++    P + +VA N R
Sbjct: 243 SFHSLEDRIVKRFMQAHA-SAPAVDRRLPIRA--VDLPSPPLKIIGRQFPGEAEVAANPR 299

Query: 306 SRSAKLRAGMRT 317
           +RSA +R   R 
Sbjct: 300 ARSAVMRIAERV 311


>gi|229918544|ref|YP_002887190.1| S-adenosyl-methyltransferase MraW [Exiguobacterium sp. AT1b]
 gi|263447045|sp|C4L5T9|RSMH_EXISA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|229469973|gb|ACQ71745.1| S-adenosyl-methyltransferase MraW [Exiguobacterium sp. AT1b]
          Length = 310

 Score =  179 bits (454), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 113/307 (36%), Positives = 172/307 (56%), Gaps = 10/307 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQE 76
           +H  VL  + I  LN  P  V +D T G  G+S    K      + A D+D  A++  +E
Sbjct: 3   EHETVLKMESIEGLNIKPDGVYVDCTLGGAGHSEEIAKRLTTGQLYAFDQDDVALAHAKE 62

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  Y+ + +  ++ F  L++ +  +GV   DGV+FDLGVSS Q+D  +RGFS+    PL
Sbjct: 63  RLAPYEGRVTFIKSNFVHLKEELAQRGVTKVDGVLFDLGVSSPQLDEAERGFSYNYDAPL 122

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  S   SA  VVN+ +  +L RI    GEEK + +IA  I + R   P +TT +L 
Sbjct: 123 DMRMDRSRDFSAYHVVNEWSFGELARIFFTYGEEKFSKQIARKIEQARADKPIETTFELV 182

Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            LI++ +   ++    HPA R+FQA+RI VN+E+    + ++ A   L   G + V++FH
Sbjct: 183 DLIKEAIPAPARRKGGHPAKRTFQAIRIAVNDELNVFDRAVQDAIDLLAVNGRICVITFH 242

Query: 252 SLEDRLVKKFFASRSGK--VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+ K+ F  RS    +     +IP    P + + IT+K +V ++ ++  NRRSRSA
Sbjct: 243 SLEDRICKQVFKERSQHPPLPPGLPVIPKEFEPEL-KLITRKPIVASEGELEDNRRSRSA 301

Query: 310 KLRAGMR 316
           KLR   +
Sbjct: 302 KLRVAEK 308


>gi|33301401|sp|Q8ER53|RSMH_OCEIH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 325

 Score =  179 bits (454), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 112/303 (36%), Positives = 167/303 (55%), Gaps = 9/303 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQ 75
           +H  VL E+ I  L   P  + +D T G GG+S     ++  N  + A D+D  A++  +
Sbjct: 3   EHYSVLKEESIKGLAIKPDGIYVDCTTGGGGHSLEIASRLNENGQLFAFDQDKDALAAAR 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + +  Y ++    Q+ F  L++ +   G   VDG++FDLGVSS Q+D GDRGFS+     
Sbjct: 63  DRLSTYADRIVFVQSNFRGLEEQLKKHGIEQVDGILFDLGVSSPQLDRGDRGFSYNHDAL 122

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S  +SA +VVN+ + + L  I    GEEK + +IA  I   R+    +TT  L
Sbjct: 123 LDMRMDQSQHLSAYEVVNEWSYERLVSIFFSYGEEKFSKQIARKIEAYREQQDIKTTHQL 182

Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+  +   ++    HPA R FQALRI VN+E+E     L  A + +   G + V++F
Sbjct: 183 VEIIKDAIPAPARRKGGHPAKRIFQALRIAVNDELEVFNNALHQAARLIAVNGRIAVITF 242

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+ K+ F   S      RH+ I   +H A F+ +T+K +     ++  NRRSRSA
Sbjct: 243 HSLEDRICKQAFKKWSTDKPTPRHLPIVPESHQAPFKLVTRKPITADTSELDENRRSRSA 302

Query: 310 KLR 312
           KLR
Sbjct: 303 KLR 305


>gi|289168599|ref|YP_003446868.1| S-adenosyl-methyltransferase mraW [Streptococcus mitis B6]
 gi|288908166|emb|CBJ23008.1| S-adenosyl-methyltransferase mraW [Streptococcus mitis B6]
          Length = 316

 Score =  179 bits (454), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 112/309 (36%), Positives = 177/309 (57%), Gaps = 14/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           HV VLL + I +L+  P  + +DAT G  G+S       S   ++ A D+D  A+   Q+
Sbjct: 7   HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66

Query: 77  TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y E+   +  +  F  LQ  + + GV   DG+ +DLGVSS Q+D  +RGFS++K  
Sbjct: 67  RLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+  + ++A +VVN  +  DL RI    GE+K + +IA  I + R+  P +TT +
Sbjct: 127 PLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186

Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L+ +I K+   +K   N+ HPA + FQA+RI VN+E+    + ++ A   L   G + V+
Sbjct: 187 LAEII-KSAKPAKELKNKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVI 245

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F   S  +V      IP +  P + + +++K ++P+ E++  N RS 
Sbjct: 246 TFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKM-ELVSRKPILPSAEELEANNRSH 304

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 305 SAKLRVARK 313


>gi|86740113|ref|YP_480513.1| S-adenosyl-methyltransferase MraW [Frankia sp. CcI3]
 gi|123737617|sp|Q2JD58|RSMH_FRASC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|86566975|gb|ABD10784.1| methyltransferase [Frankia sp. CcI3]
          Length = 321

 Score =  179 bits (454), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 116/307 (37%), Positives = 177/307 (57%), Gaps = 13/307 (4%)

Query: 23  VLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           +L ++V+ LL PA    G +++DAT G GG++ +      +V  + LDRDP A+    E 
Sbjct: 1   MLTDRVLTLLAPALRASGAIVVDATVGLGGHAAAVLTAFPHVRLVGLDRDPDALERSGER 60

Query: 78  MRDYKE-QFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           +      +  L  A + ++ + +   G   V G++FDLGVSS+Q+D  DRGF++ +  PL
Sbjct: 61  LHGLAPGRVELVHAVYDEVAEILDRLGHPVVQGILFDLGVSSLQLDTDDRGFAYSRDAPL 120

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM    G +A+DV+N  +   LTRIL   GEE+ A RIA AIV+ R   PF T+  L+
Sbjct: 121 DMRMDQTRGRTAADVLNTYDADALTRILREYGEERFARRIAGAIVQARAVTPFATSARLA 180

Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            L++  +   ++    +PA R+FQALRI VN E++ LA+ L +A  AL   G L+V+S+H
Sbjct: 181 DLVRDAIPAPARRTGGNPAKRTFQALRIEVNAELDVLARALPAAFDALAVSGRLVVLSYH 240

Query: 252 SLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDRLVK+     +   V     ++P  A P   + +T+     ++ + A N R+ S +
Sbjct: 241 SLEDRLVKRQLRGYAEASVPPDLPVVPEGAGPR-LRWLTRGAEPASETEKAENPRAASVR 299

Query: 311 LRAGMRT 317
           LRA  RT
Sbjct: 300 LRAVERT 306


>gi|23098917|ref|NP_692383.1| hypothetical protein OB1462 [Oceanobacillus iheyensis HTE831]
 gi|22777145|dbj|BAC13418.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 329

 Score =  179 bits (454), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 112/303 (36%), Positives = 167/303 (55%), Gaps = 9/303 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQ 75
           +H  VL E+ I  L   P  + +D T G GG+S     ++  N  + A D+D  A++  +
Sbjct: 7   EHYSVLKEESIKGLAIKPDGIYVDCTTGGGGHSLEIASRLNENGQLFAFDQDKDALAAAR 66

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + +  Y ++    Q+ F  L++ +   G   VDG++FDLGVSS Q+D GDRGFS+     
Sbjct: 67  DRLSTYADRIVFVQSNFRGLEEQLKKHGIEQVDGILFDLGVSSPQLDRGDRGFSYNHDAL 126

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S  +SA +VVN+ + + L  I    GEEK + +IA  I   R+    +TT  L
Sbjct: 127 LDMRMDQSQHLSAYEVVNEWSYERLVSIFFSYGEEKFSKQIARKIEAYREQQDIKTTHQL 186

Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+  +   ++    HPA R FQALRI VN+E+E     L  A + +   G + V++F
Sbjct: 187 VEIIKDAIPAPARRKGGHPAKRIFQALRIAVNDELEVFNNALHQAARLIAVNGRIAVITF 246

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+ K+ F   S      RH+ I   +H A F+ +T+K +     ++  NRRSRSA
Sbjct: 247 HSLEDRICKQAFKKWSTDKPTPRHLPIVPESHQAPFKLVTRKPITADTSELDENRRSRSA 306

Query: 310 KLR 312
           KLR
Sbjct: 307 KLR 309


>gi|161526013|ref|YP_001581025.1| S-adenosyl-methyltransferase MraW [Burkholderia multivorans ATCC
           17616]
 gi|189349270|ref|YP_001944898.1| S-adenosyl-methyltransferase MraW [Burkholderia multivorans ATCC
           17616]
 gi|263446911|sp|A9AJ24|RSMH_BURM1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|160343442|gb|ABX16528.1| S-adenosyl-methyltransferase MraW [Burkholderia multivorans ATCC
           17616]
 gi|189333292|dbj|BAG42362.1| S-adenosyl-methyltransferase [Burkholderia multivorans ATCC 17616]
          Length = 313

 Score =  179 bits (454), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 116/311 (37%), Positives = 183/311 (58%), Gaps = 21/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMG--SNVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  + +D TFG GG+SR+   ++G    +IA D+DP A+   Q 
Sbjct: 7   HRTVLLDEAVESLVTRPDGIYVDGTFGRGGHSRAVLARLGPAGRLIAFDKDPRAIETAQG 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +FS+   +F+ ++D +  +G++   GV+ DLGVSS Q+D   RGFSF+  GPL
Sbjct: 67  I---GDARFSIVHDSFASMRDALAARGIEKVSGVLLDLGVSSPQVDDPARGFSFRADGPL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTT 188
           DMRM  + G SA++ + +A++++LT ++   GEE+ A +IA A+V RR  +    P  +T
Sbjct: 124 DMRMDPTRGESAAEWLARASLQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDST 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ ++   V   +  +  PATR+FQA+RI VN E+ +L   L +A   L+ GG L+V+
Sbjct: 184 GELAQIVGHVVKTREKGK-DPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVI 242

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNRR 305
           SFHSLEDR+VK+F  + +    AV   +P  A      S   K++    P++ +VA N R
Sbjct: 243 SFHSLEDRIVKRFMQAHA-SAPAVDRRLPIRA--VDLPSPPLKIIGRQFPSEAEVAANPR 299

Query: 306 SRSAKLRAGMR 316
           +RSA +R   R
Sbjct: 300 ARSAVMRIAER 310


>gi|255082159|ref|XP_002508298.1| predicted protein [Micromonas sp. RCC299]
 gi|226523574|gb|ACO69556.1| predicted protein [Micromonas sp. RCC299]
          Length = 363

 Score =  179 bits (454), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 108/301 (35%), Positives = 165/301 (54%), Gaps = 17/301 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           HVPVL+ +V+   +    +  +D T GAGG++ +  +    +         +   Q   R
Sbjct: 67  HVPVLMRQVLDAFDGRSLRCYVDGTMGAGGHASAIIRAHPELRTFVGFDLRIHTVQSNFR 126

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
             +E+ +  Q         + D GVD ++ DLGVSSM +D  +RGFSF   GPLDMRM  
Sbjct: 127 HMRERLAELQ---------LADGGVDAILMDLGVSSMHLDTPERGFSFMNDGPLDMRMGP 177

Query: 140 SG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198
           S  +SA+DVVN+   +++ R++   GEEK    +A  I   R  AP +TT+ L   + + 
Sbjct: 178 SAKMSAADVVNEWPEEEIARVIRDYGEEKHWRLLARRICDARGIAPIETTRQLVHALGRI 237

Query: 199 --VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
             V   ++  IHPATR+FQ +RI VN E+  + + + +A  AL  GG L +++FHSLED+
Sbjct: 238 PGVKKGRSGGIHPATRTFQGIRIAVNEELAVVEEAIPAAVDALAPGGRLAIITFHSLEDK 297

Query: 257 LVKKFFASRSGKVMAVRHMIPS-----NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LVK+ F + +G   A    + +      A P + + +T+K VV   ++V  N RSRSAKL
Sbjct: 298 LVKRAFRTFAGIAPASDRPLSAWEPQPEAPPKIVKLVTRKPVVADDDEVGANARSRSAKL 357

Query: 312 R 312
           R
Sbjct: 358 R 358


>gi|188587754|ref|YP_001921594.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum E3 str.
           Alaska E43]
 gi|251777689|ref|ZP_04820609.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|263446056|sp|B2V4W0|RSMH_CLOBA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|188498035|gb|ACD51171.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum E3 str.
           Alaska E43]
 gi|243082004|gb|EES47894.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 310

 Score =  179 bits (454), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 109/303 (35%), Positives = 173/303 (57%), Gaps = 12/303 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+ VLL + +  L+     + +D T G  G+S    +  SN   +I +D+D  A+   +E
Sbjct: 5   HISVLLNECLDALDIKDNGIYVDCTLGGAGHSSHILERLSNEGLLIGIDQDRDALKAAKE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++ + E      + F  + + + +     VDG++ DLGVSS Q+D G RGFS+ K  PL
Sbjct: 65  RLKRF-ENVKYVHSNFYDIDNILQNLDIPKVDGILMDLGVSSYQLDEGARGFSYMKDAPL 123

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  +  SA ++VN+ +  +L +I+   GEE+ A RI++ IV RR   P +TT +L 
Sbjct: 124 DMRMNRDNDFSAYEIVNEYSEDELYKIIRNYGEERFAKRISNCIVNRRSDKPIETTMELV 183

Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  +   ++    HPA R+FQA+RI VN+E++ L Q +      LK GG + +++FH
Sbjct: 184 DIIKAAIPAKARREGPHPAKRTFQAIRIEVNSELKILNQTIEDGVNRLKPGGRMAIITFH 243

Query: 252 SLEDRLVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK  F   +      R   M      P+V + +++K + PT+E+V  N RSRSA
Sbjct: 244 SLEDRIVKLKFRELNDPCTCPREFPMCICGKKPSV-RLVSRKGIEPTKEEVEENPRSRSA 302

Query: 310 KLR 312
           KLR
Sbjct: 303 KLR 305


>gi|323341698|ref|ZP_08081931.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322464123|gb|EFY09316.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 303

 Score =  179 bits (454), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 110/300 (36%), Positives = 172/300 (57%), Gaps = 10/300 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H+ V+L + I LLN  P  + +DAT GAGG+S   CK  +   +I  D+D  A+    + 
Sbjct: 3   HISVMLNETIELLNINPEGIYVDATLGAGGHSYEICKQLTTGRLIGFDKDLDAIERTSKR 62

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +  + ++ ++   +++QL + + + G   VDGV+FDLGVSS Q D  +RGFS++    LD
Sbjct: 63  LEVFGDKVTMVHGSYTQLTEKLNELGIDEVDGVLFDLGVSSPQFDDAERGFSYRFDSRLD 122

Query: 135 MRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM     +SA +VVN+   + L +IL    +E+ A RI   I++ R   P +TT +L  
Sbjct: 123 MRMDQTQALSAYEVVNEYEEEHLVQILKDNSDERYARRIVKNIIENR---PVETTFELVE 179

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           LI+++       + HPA ++FQALRI VNNE EE+   +  A   +K GG ++V++FHS+
Sbjct: 180 LIKRSYPGKDLKKGHPAKKTFQALRIEVNNEFEEVKDAVEQAVHVIKPGGRVVVITFHSI 239

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           EDR+VK+ F S  GK   V   +P      +   +  K +  + E++ FN R+ SA LR 
Sbjct: 240 EDRIVKRIF-SNYGKPKKVDPRLPIIEEQVLNYKLVSKALKASTEELEFNNRAHSAILRG 298


>gi|148273048|ref|YP_001222609.1| S-adenosyl-methyltransferase MraW [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|263446039|sp|A5CS59|RSMH_CLAM3 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|147830978|emb|CAN01923.1| putative S-adenosyl-methyltransferase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 318

 Score =  179 bits (454), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 110/298 (36%), Positives = 164/298 (55%), Gaps = 9/298 (3%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74
           H PVLLE+ + LL PA    G V++DAT G  G+S +F     G  ++ LDRDP A++  
Sbjct: 7   HTPVLLERCLELLAPALQGEGAVLVDATLGMAGHSEAFLDALPGLRLVGLDRDPDALAIA 66

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            E +  + ++ +L    +  +   +   G   V GV FDLGVSS+Q+D  +RGFS+ +  
Sbjct: 67  GERLARFGDRVNLVHTVYDGIGRALDGLGIGEVQGVFFDLGVSSLQLDRVERGFSYSQDA 126

Query: 132 PLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM   +G++A+ VV + +  +L RI    GEEK A R A  IV+ R+  P  T+  
Sbjct: 127 PLDMRMDGTAGLTAAQVVAEYDELELRRIFYDYGEEKLAPRYASRIVQAREVEPITTSAR 186

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L  +IQ+    +     HPA R FQALRI VN E+  LA+ + +A   L  GG ++V S+
Sbjct: 187 LVEIIQQATPAAVQRAGHPAKRVFQALRIEVNQELSVLARAMPAAVDRLAVGGRVVVESY 246

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
            SLEDR+VK+   +RS     V   +    H    + + +   +  Q ++A N R+ S
Sbjct: 247 QSLEDRIVKRELRARSTSTAPVGLPVELPEHRPELKLLVRGAELADQHEIAQNPRAAS 304


>gi|304317210|ref|YP_003852355.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778712|gb|ADL69271.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 310

 Score =  179 bits (454), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 109/302 (36%), Positives = 161/302 (53%), Gaps = 8/302 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77
           H  VLL + I  L   P  V +D T G GG+S    +      +IA+DRD  A+      
Sbjct: 5   HESVLLNETIEYLKVKPDGVYVDGTLGGGGHSYEILRRLPRGRLIAIDRDMDALYAASVR 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++D+    +     +  +++ + +   + +DG + DLGVSS Q+D   RGFS+    PLD
Sbjct: 65  LKDF-NNVTYVHDNYKNIKNILKNIDIERIDGAILDLGVSSYQLDEVKRGFSYMHDAPLD 123

Query: 135 MRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM   S ++A  VVN  +  D+ RIL   GEEK A RIA  IV+ R+    +TT  L  
Sbjct: 124 MRMDKGSALTAEHVVNNYSEDDIARILFDYGEEKWAKRIAKFIVEERKKRSIKTTFQLVD 183

Query: 194 LIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +I+K V  SK     HPA R+FQA+RI VN+E++ L   +      +   G + +++FHS
Sbjct: 184 IIKKAVPASKRRTGPHPAKRTFQAIRIEVNDELKGLDSAIDDFIDVMNPNGRIAIITFHS 243

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK  +          +++  +     V + ITKK V P +E++  N RSRSAKLR
Sbjct: 244 LEDRIVKNMYKKLENPCTCPKNLPCTCGKKPVIKIITKKPVTPNKEELKTNPRSRSAKLR 303

Query: 313 AG 314
             
Sbjct: 304 VA 305


>gi|306836499|ref|ZP_07469470.1| S-adenosyl-methyltransferase MraW [Corynebacterium accolens ATCC
           49726]
 gi|304567589|gb|EFM43183.1| S-adenosyl-methyltransferase MraW [Corynebacterium accolens ATCC
           49726]
          Length = 346

 Score =  179 bits (454), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 118/329 (35%), Positives = 178/329 (54%), Gaps = 27/329 (8%)

Query: 10  SSAIHHTIGD---HVPVLLEKVIALLNP---APGK--VILDATFGAGGYSRSFCKM--GS 59
           ++ +++ + D   HVPV+ E++  LL P   A G   V++DAT GAGG+S  F +    +
Sbjct: 3   TTNLNYDVADNHGHVPVMRERMAELLRPGVEAAGSQAVLVDATLGAGGHSEYFLQTFPQA 62

Query: 60  NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ-----------DYVPDKGVDGVV 108
            VI +DRD  A+      +  +  +F    A F +L            D     G+ G +
Sbjct: 63  RVIGVDRDEQALQNASARLEPFGPRFCAVNARFDELGTAIAQGEGDIFDAARAHGIAGAL 122

Query: 109 FDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEK 167
           FDLGVSSMQ+D  +RGF+++   PLDMRM  S G++A+DV+N  +  DL RIL   G+E+
Sbjct: 123 FDLGVSSMQLDQAERGFAYKTDAPLDMRMDPSHGLTAADVLNSYSHGDLARILKTYGDER 182

Query: 168 QASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIE 226
            A +IA A++K R+  PF T+  L  L+  T+   ++    HPA R+FQALR+ VN E+E
Sbjct: 183 FAGKIASAVLKEREKEPFSTSGRLVELLYSTIPAATRRTGGHPAKRTFQALRVEVNRELE 242

Query: 227 ELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAV 284
            +   L     AL  G   + +S+ SLEDRLVK  F   S S     +   +P  A    
Sbjct: 243 AIENVLPVITSALSIGARAVFMSYQSLEDRLVKAAFKELSTSTTPAGLPMDLPGTA--PE 300

Query: 285 FQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           F ++T+     +Q +V  N R+ S ++RA
Sbjct: 301 FATVTRGAEKASQAEVEENSRAASVRVRA 329


>gi|300811319|ref|ZP_07091816.1| S-adenosyl-methyltransferase MraW [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300497683|gb|EFK32708.1| S-adenosyl-methyltransferase MraW [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 314

 Score =  179 bits (453), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 112/307 (36%), Positives = 173/307 (56%), Gaps = 16/307 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77
           H  VLL + I  L P  G   +DATFG GG++R         N+I  D+D +A+   Q  
Sbjct: 5   HTSVLLHETIDNLAPQSGGTYVDATFGGGGHARYLLSKLDKGNLIGFDQDQYAIDTAQSN 64

Query: 78  M-----RDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
                  D + +  L    FS L++ +      G+DG+ +DLGVSS Q+D  +RGFS++ 
Sbjct: 65  FAAFLKEDSQPRLQLVHNNFSHLKEELAKLRISGIDGIYYDLGVSSPQLDQAERGFSYRF 124

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
              LDMRM  S    A  +VNQ + K L  +L   G+EK + +IA  IV+RR++ P +TT
Sbjct: 125 DARLDMRMDQSQDFDAYQLVNQYDQKQLADVLYRYGDEKFSRQIARKIVERRRAKPIETT 184

Query: 189 QDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L  +I++ +   ++ +  HPA +SFQA+R+ VN+E++ L   L  A   L  GG + V
Sbjct: 185 FELVEIIKEAIPAAARRSGGHPAKKSFQAIRVEVNHELDVLRASLEEAISLLNPGGRISV 244

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           ++F SLED++VK+ F   S +V   R M  +P    P + + + +K +  ++E++A N R
Sbjct: 245 ITFQSLEDKIVKQTFKKYS-EVEIPRGMPVVPEGIKPTL-RLVNRKPITASEEELAENNR 302

Query: 306 SRSAKLR 312
           S SAKLR
Sbjct: 303 SHSAKLR 309


>gi|269215884|ref|ZP_06159738.1| S-adenosyl-methyltransferase MraW [Slackia exigua ATCC 700122]
 gi|269130834|gb|EEZ61910.1| S-adenosyl-methyltransferase MraW [Slackia exigua ATCC 700122]
          Length = 318

 Score =  179 bits (453), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 121/314 (38%), Positives = 180/314 (57%), Gaps = 20/314 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYS-RSFCKMGSN--VIALDRDPFAVSCGQE 76
           H PVLL + +  L   P  + +DAT G  G+S  +  ++G++  +I +D+D  A++   E
Sbjct: 7   HTPVLLAECLEGLALKPRHIFVDATLGGAGHSCEAAGRLGADGLLIGIDQDDAALAAAGE 66

Query: 77  TMRDYKEQ----FSLFQATFSQLQDY-----VPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
            +R   E+      L +  F  L +      VP  G+DG++FDLGVSS Q+D   RGFSF
Sbjct: 67  RLRALPEKKRPRIKLLKGNFGDLDELLVRAQVP--GIDGILFDLGVSSPQLDVASRGFSF 124

Query: 128 QKSGPLDMRMSCS--GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           ++  PLDMRM       +A+++VN A   +L RI+    +EK A RIA  IV  R+ AP 
Sbjct: 125 REDAPLDMRMDPGRQTRNAAELVNSATESELARIIFENSDEKWARRIAQFIVAAREDAPI 184

Query: 186 QTTQDLSSLIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           +TT  L  +I+  +  S   R  HPA R+FQALRI VN+E++ L +GL +A + L   G 
Sbjct: 185 ETTGQLVEIIKAAIPASARRRGGHPAKRTFQALRIEVNSELDALKRGLEAAVRWLNPQGR 244

Query: 245 LIVVSFHSLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           + V+S+HSLEDR+VK  FA  SR+        +    A P V + +T+K ++P + ++  
Sbjct: 245 IAVISYHSLEDRIVKNLFADLSRTCICPPDLPVCVCGADP-VLKVMTRKPLLPAEGEIEG 303

Query: 303 NRRSRSAKLRAGMR 316
           N R+RSAKLR   R
Sbjct: 304 NPRARSAKLRIACR 317


>gi|256821906|ref|YP_003145869.1| S-adenosyl-methyltransferase MraW [Kangiella koreensis DSM 16069]
 gi|256795445|gb|ACV26101.1| S-adenosyl-methyltransferase MraW [Kangiella koreensis DSM 16069]
          Length = 311

 Score =  179 bits (453), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 102/259 (39%), Positives = 151/259 (58%), Gaps = 10/259 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVS 72
           T  +H  VLLE+ +  L   P  + +D TFG GG+SR+     S    +I  D+D  A++
Sbjct: 3   TKQEHDAVLLEEAVEALVIDPNGIYIDCTFGRGGHSRAILSHLSEEGRLIGFDKDLQAIA 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128
            G E ++    +F++   +FS L+  V  +G    V GV+ DLGVSS Q+D  +RGFSF 
Sbjct: 63  VG-EQLQQEDARFNIVHESFSLLEQEVSKRGWVGEVTGVLMDLGVSSPQLDQAERGFSFM 121

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           + GPLDMRM  + G +A   +   + +D+       GEE+ A RIA AIV++R  AP   
Sbjct: 122 QDGPLDMRMDTTRGQTAEQWIANTDEEDMVWAFKAFGEERYAKRIARAIVEKRAKAPITR 181

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T+ L+ +I +     + ++ HPATR FQA+RI VN E+++L   L      LK GG L+ 
Sbjct: 182 TKQLADIISEAHPRWEKHK-HPATRCFQAIRIAVNRELDDLKDTLEQVLNVLKVGGRLVA 240

Query: 248 VSFHSLEDRLVKKFFASRS 266
           +SFHSLEDR+VK+F   ++
Sbjct: 241 ISFHSLEDRIVKQFIQKQA 259


>gi|323356558|ref|YP_004222954.1| S-adenosylmethionine-dependent methyltransferase [Microbacterium
           testaceum StLB037]
 gi|323272929|dbj|BAJ73074.1| predicted S-adenosylmethionine-dependent methyltransferase
           [Microbacterium testaceum StLB037]
          Length = 317

 Score =  179 bits (453), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 114/309 (36%), Positives = 167/309 (54%), Gaps = 9/309 (2%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74
           H PVLLE+   LL PA   P  V +D T G GG+S +F +    + +I LDRD  A+   
Sbjct: 7   HTPVLLERCAELLAPALERPDAVFVDGTLGMGGHSEAFLERFPTARLIGLDRDTDALRIA 66

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSG 131
            E +  + ++ +L    +  + + V   GVD   G++FDLGVSS+Q+D   RGF++ +  
Sbjct: 67  GERLARFGDRVTLVHTVYDGIAEAVASAGVDKVDGILFDLGVSSLQLDEASRGFAYAQDA 126

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM    G++A++V+      DL RI    GEEK A R A AI+  R  AP + +  
Sbjct: 127 PLDMRMDQTQGVTAAEVLATYGEGDLRRIFERYGEEKLAGRYARAIIAARAEAPLERSGQ 186

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L  ++Q     +     HPA R FQALRI VN E+  L + + +A K L  GG ++V+S+
Sbjct: 187 LVDVLQAATPAAVLRERHPAKRVFQALRIEVNAELSVLERTIPAALKVLGVGGRIVVLSY 246

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
            SLEDRLVK+ FA  +         +    H   F+ + +   + + E+ A N R+   +
Sbjct: 247 QSLEDRLVKRVFAEAAASTAPRGLPVELPEHAPKFRLLVRGAELASDEERAANPRATPVR 306

Query: 311 LRAGMRTVE 319
           LRA  RT E
Sbjct: 307 LRAAERTKE 315


>gi|270292146|ref|ZP_06198361.1| S-adenosyl-methyltransferase MraW [Streptococcus sp. M143]
 gi|270279674|gb|EFA25516.1| S-adenosyl-methyltransferase MraW [Streptococcus sp. M143]
          Length = 316

 Score =  179 bits (453), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 112/309 (36%), Positives = 176/309 (56%), Gaps = 14/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           HV VLL + I +L+  P  + +DAT G  G+S       S   ++ A D+D  A+   Q+
Sbjct: 7   HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66

Query: 77  TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y E+   +  +  F  LQ  + D GV   DG+ +DLGVSS Q+D  +RGFS++K  
Sbjct: 67  RLAPYIEKGMVTFIKDNFRHLQARLQDAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+  + ++A +VVN  +  DL RI    GE+K + +IA  I + R+  P +TT +
Sbjct: 127 PLDMRMNQGASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186

Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L+ +I K+   +K    + HPA + FQA+RI VN+E+    + ++ A   L   G + V+
Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVI 245

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F   S  +V      IP +  P + + +++K ++P+ E++  N RS 
Sbjct: 246 TFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKM-ELVSRKPILPSAEELEANNRSH 304

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 305 SAKLRVARK 313


>gi|33593961|ref|NP_881605.1| S-adenosyl-methyltransferase MraW [Bordetella pertussis Tohama I]
 gi|33598269|ref|NP_885912.1| S-adenosyl-methyltransferase MraW [Bordetella parapertussis 12822]
 gi|33603180|ref|NP_890740.1| S-adenosyl-methyltransferase MraW [Bordetella bronchiseptica RB50]
 gi|42558972|sp|Q7VUP6|RSMH_BORPE RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|42558973|sp|Q7W4A7|RSMH_BORPA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|42558974|sp|Q7WFR5|RSMH_BORBR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|33564035|emb|CAE43301.1| S-adenosyl-methyltransferase [Bordetella pertussis Tohama I]
 gi|33566827|emb|CAE39042.1| S-adenosyl-methyltransferase [Bordetella parapertussis]
 gi|33568811|emb|CAE34569.1| S-adenosyl-methyltransferase [Bordetella bronchiseptica RB50]
 gi|332383379|gb|AEE68226.1| S-adenosyl-methyltransferase MraW [Bordetella pertussis CS]
          Length = 364

 Score =  179 bits (453), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 126/333 (37%), Positives = 186/333 (55%), Gaps = 37/333 (11%)

Query: 19  DHVPVLLEKVI-ALLNP------------APGK---------VILDATFGAGGYSRSF-C 55
           +H PVLLE  + AL+ P             PG          V +D TFG GG+SR+   
Sbjct: 4   EHRPVLLEPTVDALVLPDFGGKGAHRQAGEPGPDAATRLQHGVFVDGTFGRGGHSRALLA 63

Query: 56  KMGSN--VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFD 110
           ++G+   ++  D+DP A++  +E +     +  +    F+ + + +  +G   VDGV+ D
Sbjct: 64  RLGAQARLVVFDKDPQAIAVARE-LAAGDGRVEVVHGGFATMAEELTARGIEQVDGVMLD 122

Query: 111 LGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQA 169
           LGVSS QID  +RGFSF + GPLDMRM  + G + +D + QA+V ++  ++   GEE+ A
Sbjct: 123 LGVSSPQIDDAERGFSFMRDGPLDMRMDTTRGPTVADWLAQASVDEMREVIADYGEERFA 182

Query: 170 SRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELA 229
            ++A AI   R + P  TT  L+  +   V   +  + HPATR+FQALRI++N E+EELA
Sbjct: 183 FQVAKAIAACRATRPLHTTLQLAECVAGAVRTREKGQ-HPATRTFQALRIYINRELEELA 241

Query: 230 QGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP---SNAHPAVFQ 286
           + L SA   L  GG L V+SFHSLEDR+VK+  A+ + +  A    +P   S     + +
Sbjct: 242 RALASALDLLGPGGRLAVISFHSLEDRMVKQCIAAAA-RPAAAHARLPLRESELPQPLVR 300

Query: 287 SITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319
           S+ K  VV    +VA N R+RSA LR   RT E
Sbjct: 301 SLGK--VVADDVEVAGNARARSAILRVAERTGE 331


>gi|325102881|ref|YP_004272535.1| S-adenosyl-methyltransferase MraW [Pedobacter saltans DSM 12145]
 gi|324971729|gb|ADY50713.1| S-adenosyl-methyltransferase MraW [Pedobacter saltans DSM 12145]
          Length = 302

 Score =  179 bits (453), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 117/305 (38%), Positives = 170/305 (55%), Gaps = 16/305 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76
           HVPV+L + I  L+  P  V +D TFG GG+SR   K +G +  ++A D+D   V   Q 
Sbjct: 6   HVPVMLSECIEGLDIKPDGVYVDVTFGGGGHSREIIKHLGEDGVLVAFDQD---VDAQQN 62

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + D  ++F      F  L++ +   G   VDG++ DLGVSS Q D  +RGFS +  G L
Sbjct: 63  RIAD--DRFVFIDQNFRYLKNNLRLHGLAPVDGILADLGVSSHQFDVPERGFSIRFDGDL 120

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  SG ++A  V+ + + ++L +I GI GE + A  +A  IV  R +    T +DL 
Sbjct: 121 DMRMDQSGELTAKKVIGEYSEEELHKIFGIYGEIQNARSLAKTIVTARLNKEIVTIEDLK 180

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           S I K +  +K N+     + FQALRI VN E+E L + L  A + LK GG L+V+S+HS
Sbjct: 181 SAIAKLIPRNKENKY--LAQVFQALRIEVNQEMEVLKEFLEQAAEVLKPGGRLVVMSYHS 238

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDRLVK F           +    +   P  F  +TKK +  ++E++  N RSRSA+LR
Sbjct: 239 LEDRLVKNFMMKGKFSGQVEKDFYGNEIKP--FTVLTKKSITASEEELLRNNRSRSARLR 296

Query: 313 AGMRT 317
             ++ 
Sbjct: 297 IAVKN 301


>gi|42518892|ref|NP_964822.1| S-adenosyl-methyltransferase MraW [Lactobacillus johnsonii NCC 533]
 gi|41583178|gb|AAS08788.1| S-adenosyl-methyltransferase MraW [Lactobacillus johnsonii NCC 533]
          Length = 322

 Score =  179 bits (453), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 111/307 (36%), Positives = 177/307 (57%), Gaps = 15/307 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77
           H  VLL + I  LNP  G + +DATFG GG++R          VI  D+D +A+S  +E+
Sbjct: 12  HKSVLLHETIDNLNPKDGGLYVDATFGGGGHARYLLSKLNKGTVIGFDQDEYAISMAKES 71

Query: 78  MRDY-----KEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
                    + +  L    F  L++ + +     G+DG+ +DLGVSS Q D  +RGFS++
Sbjct: 72  FAKELQVGAEPRLMLVHDNFCHLKENLVELGISDGIDGIYYDLGVSSPQFDQPERGFSYR 131

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
               LDMRM  S  + A  +VN  + K+L+ +L   G+EK + +IA  IV RR+  P  T
Sbjct: 132 FDARLDMRMDQSQELDAYTIVNTWSQKELSDVLYKYGDEKFSRQIARKIVDRRKEKPIVT 191

Query: 188 TQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T DL  +I+  +  +++ +  HPA +SFQA+R+ VN+E+  L + L  A K LK GG + 
Sbjct: 192 TFDLVDVIKDAIPAYARRSGGHPAKKSFQAIRVAVNDELGVLQESLEEAIKLLKPGGRIS 251

Query: 247 VVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           V++F S ED++VKK F   S  ++     M+P+++ P + + I++K ++ + +++  N R
Sbjct: 252 VITFQSHEDKIVKKIFKKYSEVEIPRGMPMVPADSKPTL-RLISRKPIMASSDELEENNR 310

Query: 306 SRSAKLR 312
           S SAKLR
Sbjct: 311 SHSAKLR 317


>gi|118602334|ref|YP_903549.1| S-adenosyl-methyltransferase MraW [Candidatus Ruthia magnifica str.
           Cm (Calyptogena magnifica)]
 gi|262826332|sp|A1AVX1|RSMH_RUTMC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|118567273|gb|ABL02078.1| S-adenosyl-methyltransferase MraW [Candidatus Ruthia magnifica str.
           Cm (Calyptogena magnifica)]
          Length = 307

 Score =  179 bits (453), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 107/308 (34%), Positives = 175/308 (56%), Gaps = 16/308 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQE 76
           H  V+L + I  LN     + +DATFG GG+++    K+G    +IA D+D  A+    +
Sbjct: 6   HQSVMLNESIGALNIKTDGIYIDATFGRGGHAQGILNKLGEQGKLIAFDQDINAIEYAHK 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              D   + +L  + FS + + +  +G    +DG++ DLGVSS Q+D   RGFSF+  GP
Sbjct: 66  NFTD--SRLTLIYSAFSNMLNIITQQGLMSKIDGILMDLGVSSPQLDNAQRGFSFKADGP 123

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+  +G+SA+  +N AN +++  ++   G+EK++  IA  I K +Q    +TT  L
Sbjct: 124 LDMRMNQTTGMSATQWLNLANEEEIANVIYQFGDEKRSRHIATRIKKYQQKHTLETTLAL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++ K V   KN   HPATR+FQA+RIF+N E+++L   L  ++  L+  G L ++SFH
Sbjct: 184 AGIVSKVVKRQKNK--HPATRTFQAIRIFINQELKQLEDVLEQSKDILRKDGRLSIISFH 241

Query: 252 SLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           S+EDR+VK F    SR   +     +I         +++ K     ++ +++ N+R+RSA
Sbjct: 242 SIEDRIVKHFIQKNSRQKNLPKGLPIIDYKIEKTCLKNLGK--YFASKAEISRNKRARSA 299

Query: 310 KLRAGMRT 317
            LR   + 
Sbjct: 300 ILRVASKN 307


>gi|225568665|ref|ZP_03777690.1| hypothetical protein CLOHYLEM_04743 [Clostridium hylemonae DSM
           15053]
 gi|225162593|gb|EEG75212.1| hypothetical protein CLOHYLEM_04743 [Clostridium hylemonae DSM
           15053]
          Length = 311

 Score =  179 bits (453), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 106/310 (34%), Positives = 172/310 (55%), Gaps = 23/310 (7%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
           +H  VLL++ I  LN  P    +D T G GG++   C+   N   ++ +D+D  A++   
Sbjct: 4   EHKSVLLDETINGLNIRPDGTYVDGTLGGGGHAYEICRHLGNKGSIVGIDQDAAAITAAG 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             ++D+ E+ ++ ++ +  ++  +   G   VDG+V DLGVSS Q+D  +RGFS+++  P
Sbjct: 64  ARLKDFGEKVTIVRSNYCDMKSQLHKLGIDRVDGIVLDLGVSSYQLDTAERGFSYREDAP 123

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM     ++A D+VN  +  DL R++   GE+K A  IA  I   R+    +TT  L
Sbjct: 124 LDMRMDTRQKMTARDIVNDYSEMDLYRVIRDYGEDKFAKNIAKHIAAARRERSIETTGQL 183

Query: 192 SSLIQKTV---YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           + +I++ +   Y  K+   HP+ R+FQA+RI +N E+E L   L      LK GG L ++
Sbjct: 184 TEIIRQAIPMKYQKKSG--HPSKRTFQAIRIELNRELEVLRDSLDEMIDLLKPGGRLCII 241

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS------ITKKVVVPTQEDVAF 302
           +FHSLEDR+VK  F              PS+    V         +T+K ++P +E++ +
Sbjct: 242 TFHSLEDRIVKSAFKKNENPCTC-----PSDFPVCVCGKESKGSILTRKPILPGEEELEY 296

Query: 303 NRRSRSAKLR 312
           N R++SAKLR
Sbjct: 297 NSRAKSAKLR 306


>gi|296117529|ref|ZP_06836113.1| S-adenosyl-methyltransferase MraW [Corynebacterium ammoniagenes DSM
           20306]
 gi|295969260|gb|EFG82501.1| S-adenosyl-methyltransferase MraW [Corynebacterium ammoniagenes DSM
           20306]
          Length = 363

 Score =  179 bits (453), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 115/331 (34%), Positives = 182/331 (54%), Gaps = 28/331 (8%)

Query: 20  HVPVLLEKVIALLNPA-----PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVS 72
           HVPV+  ++  L+ PA        +I+D T GAGG++  F +    + VI +DRD  +++
Sbjct: 31  HVPVMRARMAELIAPAVEAAGENAIIIDGTLGAGGHTEYFLQNFPQARVIGVDRDAASLA 90

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD-----------KGVDGVVFDLGVSSMQIDCG 121
              E +  + ++F      F ++   + +            GV G +FDLGVSSMQ+D  
Sbjct: 91  EAGERLSPFADRFVGVNERFDEIGSAIAEGDGEVFEIARQHGVAGALFDLGVSSMQLDQA 150

Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           DRGF+++   PLDMRM  S GI+A+DV+N  +  +L  IL + G+E+ A +IA A++K R
Sbjct: 151 DRGFAYKVDAPLDMRMDPSAGITAADVLNTYSHGELAHILKMYGDERFAGKIASAVLKER 210

Query: 181 QSAPFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
              PF T+  L  L+  T+   ++    HPA R+FQALR+ VN E+E + Q +     AL
Sbjct: 211 DKQPFDTSARLVELLYNTIPAATRRTGGHPAKRTFQALRVEVNGELEAIEQVIPVITSAL 270

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297
             GG ++ +S+ SLED+LVK  F   + S     +   +P  A  A F++IT+     T+
Sbjct: 271 NIGGRVVFMSYQSLEDKLVKSTFKTLTTSSTPAGLPMDLPGTA--AHFKTITRGSEKATE 328

Query: 298 EDVAFNRRSRSAKLRAGMRTVERSIEDDSFV 328
            ++A N R+ S ++RA     ER   + SF+
Sbjct: 329 AEIAENPRAASVRVRA----FERLAGEHSFI 355


>gi|304439975|ref|ZP_07399868.1| S-adenosyl-methyltransferase MraW [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304371467|gb|EFM25080.1| S-adenosyl-methyltransferase MraW [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 314

 Score =  179 bits (453), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 110/308 (35%), Positives = 167/308 (54%), Gaps = 19/308 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
           +H+PVL  + I  LN     + +D T G  G+S    K  +    ++ +D+D FA+   +
Sbjct: 5   EHIPVLFNETIEGLNIRENHIYMDCTIGGAGHSSEILKRLNGTGLLVGIDQDEFALYTSE 64

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + +R+  + F LF   F   ++ +   G   VDG++ DLGVSS Q D   RGFS+    P
Sbjct: 65  KRLREIGDNFKLFNNNFELFRENLDSLGISKVDGILLDLGVSSHQFDEASRGFSYNYDAP 124

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+ S  I+A D+VN  + + L +I    GEEK + R+A  IVK R S   +TT +L
Sbjct: 125 LDMRMNKSTRITAKDIVNTYSKEALMKIFYEYGEEKWSKRVAEFIVKARNSKTIETTFEL 184

Query: 192 SSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+  +   +++   HPA R FQALRI  N+E+  L + L    ++L  GG + V+SF
Sbjct: 185 VEIIKAAIPKGARSGGPHPAKRIFQALRIETNDELGVLRRSLGDMIESLNPGGRICVISF 244

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV------FQSITKKVVVPTQEDVAFNR 304
           HSLEDR+VK  F     K   +  + P              + IT+K +  ++E++A N 
Sbjct: 245 HSLEDRIVKDTF-----KYYYLDCICPPEVPVCTCNKKREIEIITRKPITASKEELAINN 299

Query: 305 RSRSAKLR 312
           R+ SAKLR
Sbjct: 300 RAHSAKLR 307


>gi|296140350|ref|YP_003647593.1| S-adenosyl-methyltransferase MraW [Tsukamurella paurometabola DSM
           20162]
 gi|296028484|gb|ADG79254.1| S-adenosyl-methyltransferase MraW [Tsukamurella paurometabola DSM
           20162]
          Length = 331

 Score =  179 bits (453), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 112/307 (36%), Positives = 166/307 (54%), Gaps = 10/307 (3%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCG 74
           HVPVL  +V  LL PA    G + +DAT GAGG+S        N  VI LDRD  A    
Sbjct: 10  HVPVLATRVRELLAPALAHDGAIYVDATLGAGGHSELILDTFPNARVIGLDRDTDAHDIA 69

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
              +  +  +F+     +  +   + D G   VD ++FDLGVSSMQ+D  +RGF++    
Sbjct: 70  GARLARFGGRFTAVHTRYDAIAAALDDLGIETVDAILFDLGVSSMQLDRAERGFAYSVDA 129

Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+    ++A+DV+N  +  DL RIL   G+E+ A +IA A++K R+  PF T+  
Sbjct: 130 PLDMRMNADDPLTAADVLNTYSHGDLARILQRYGDERFAGKIASAVLKEREREPFTTSGR 189

Query: 191 LSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  L+  T+   ++    HPA R+FQALRI VN E+  L   +  A   L   G ++ +S
Sbjct: 190 LVELLYATIPAPARRTGGHPAKRTFQALRIEVNAELASLESAVPQALDVLAPEGRIVFLS 249

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           + SLEDR+VK   A+R+         +      A F+ +T+     T E++A N+R+   
Sbjct: 250 YQSLEDRIVKAELAARTRSTTPAGLPMDLPGTGATFELLTRGAERATDEEIAENQRAAPV 309

Query: 310 KLRAGMR 316
           ++RA  R
Sbjct: 310 RMRAARR 316


>gi|194014300|ref|ZP_03052917.1| S-adenosyl-methyltransferase MraW [Bacillus pumilus ATCC 7061]
 gi|194013326|gb|EDW22891.1| S-adenosyl-methyltransferase MraW [Bacillus pumilus ATCC 7061]
          Length = 310

 Score =  179 bits (453), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 112/304 (36%), Positives = 171/304 (56%), Gaps = 13/304 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN       +D T G  G+S       S    +I  D+D  A+   +E
Sbjct: 4   HETVLLKETVDGLNVKEDGTYVDCTLGGAGHSSYLLSQLSEKGTLIGFDQDDAALDHARE 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + D K      ++ F  L++ + ++G   VDGV+FDLGVSS Q+D  +RGFS+    PL
Sbjct: 64  KLADSKANILFIKSNFRYLKERLNEQGITSVDGVIFDLGVSSPQLDTPERGFSYHHDAPL 123

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  S  +SA  VVN+   +DL RI    GEEK + +IA  I + R+ AP +TT +L 
Sbjct: 124 DMRMDQSAALSAKKVVNEWPFEDLVRIFYKYGEEKFSKQIARKIEEARKKAPIETTGELV 183

Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I++ +   ++    HPA R FQA+RI VN+E++   + L  A + L   G + V++FH
Sbjct: 184 DIIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALEQAIELLNPKGRISVITFH 243

Query: 252 SLEDRLVKKFFASRSGKVMAVRH---MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SLEDR+ K  F   S  +  + H   +IP    P + + IT+K +V +++++  N R+RS
Sbjct: 244 SLEDRICKSTFREMSS-LPELPHGLPVIPEGLEPKL-KLITRKPIVASEQELEHNNRARS 301

Query: 309 AKLR 312
           AKLR
Sbjct: 302 AKLR 305


>gi|149198205|ref|ZP_01875252.1| putative S-adenosylmethionine-dependent methyltransferase
           [Lentisphaera araneosa HTCC2155]
 gi|149138807|gb|EDM27213.1| putative S-adenosylmethionine-dependent methyltransferase
           [Lentisphaera araneosa HTCC2155]
          Length = 311

 Score =  178 bits (452), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 110/301 (36%), Positives = 170/301 (56%), Gaps = 8/301 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           H+PVL E+VI  L P  G   +D T G GG+S      G +V  + LD D  A+    E 
Sbjct: 6   HIPVLAEQVIDGLRPQNGGKFIDCTLGGGGHSSMILSSGPDVKLLGLDCDDNALRAASER 65

Query: 78  MRDYKEQFSLFQATF---SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +  + ++F   +  F   ++L+D      VDG++ D+GVSS  +D   RGF+++++GPLD
Sbjct: 66  LSSFGDRFKSKRLNFRDLAKLKDDAEWNQVDGILMDIGVSSHHLDEASRGFTYRENGPLD 125

Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM     ++AS ++N+ +++ LT+I    GE K+A R+A A+V  R+   F  T+ L+ 
Sbjct: 126 MRMDRRLKVTASMILNKESLEGLTKIFRDYGEMKEAYRLAKAVVADREKELFTHTEQLAG 185

Query: 194 LIQKTVYFSKNNRIHPA-TRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           L  +        + +PA T +FQALRI VN+E+  L  G+++A   LK GG L V+SFHS
Sbjct: 186 LADRVCVNRNRRKRNPAPTLAFQALRIAVNDELGALESGMKAAFDLLKPGGRLAVISFHS 245

Query: 253 LEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK+FF  ++        + I      A  + IT+K +     ++A N R+  AKL
Sbjct: 246 LEDRMVKEFFKDKATSCTCPPDLPICVCGSKAQMKIITRKPLTAESGELAENTRAACAKL 305

Query: 312 R 312
           R
Sbjct: 306 R 306


>gi|262527565|sp|P62471|RSMH_LACJO RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 315

 Score =  178 bits (452), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 111/311 (35%), Positives = 178/311 (57%), Gaps = 15/311 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77
           H  VLL + I  LNP  G + +DATFG GG++R          VI  D+D +A+S  +E+
Sbjct: 5   HKSVLLHETIDNLNPKDGGLYVDATFGGGGHARYLLSKLNKGTVIGFDQDEYAISMAKES 64

Query: 78  MRDY-----KEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
                    + +  L    F  L++ + +     G+DG+ +DLGVSS Q D  +RGFS++
Sbjct: 65  FAKELQVGAEPRLMLVHDNFCHLKENLVELGISDGIDGIYYDLGVSSPQFDQPERGFSYR 124

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
               LDMRM  S  + A  +VN  + K+L+ +L   G+EK + +IA  IV RR+  P  T
Sbjct: 125 FDARLDMRMDQSQELDAYTIVNTWSQKELSDVLYKYGDEKFSRQIARKIVDRRKEKPIVT 184

Query: 188 TQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T DL  +I+  +  +++ +  HPA +SFQA+R+ VN+E+  L + L  A K LK GG + 
Sbjct: 185 TFDLVDVIKDAIPAYARRSGGHPAKKSFQAIRVAVNDELGVLQESLEEAIKLLKPGGRIS 244

Query: 247 VVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           V++F S ED++VKK F   S  ++     M+P+++ P + + I++K ++ + +++  N R
Sbjct: 245 VITFQSHEDKIVKKIFKKYSEVEIPRGMPMVPADSKPTL-RLISRKPIMASSDELEENNR 303

Query: 306 SRSAKLRAGMR 316
           S SAKLR   +
Sbjct: 304 SHSAKLRVAEK 314


>gi|323340611|ref|ZP_08080863.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Lactobacillus ruminis ATCC 25644]
 gi|323091734|gb|EFZ34354.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Lactobacillus ruminis ATCC 25644]
          Length = 316

 Score =  178 bits (452), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 112/306 (36%), Positives = 171/306 (55%), Gaps = 13/306 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
           +HV VLL + +  LN  P  V +D T G GG+++      S    + + D+D  A+   +
Sbjct: 5   EHVTVLLNEAVEGLNIKPDGVYVDCTLGGGGHTKKILSELSEKGRLYSFDQDQTAIDYNE 64

Query: 76  ETMRDYKEQ--FSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           E +++  E+   +L ++ F  +   +  +    VDG+V+DLGVSS Q D G+RGFS+Q  
Sbjct: 65  EQLKNEIEKGRLTLIKSNFRNIASELEKRDVLSVDGIVYDLGVSSPQFDVGERGFSYQHD 124

Query: 131 GPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM   + ++A  +VN+ +  DL RI    GEEK A  IA  I K RQ+   +TT 
Sbjct: 125 AVLDMRMDQTNDLTAETIVNEWSYNDLVRIFVRYGEEKFAKSIARRIEKDRQNERIKTTG 184

Query: 190 DLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L  LI++ +   ++    HPA + FQA+RI VN+E+  L + L  A   L   G + V+
Sbjct: 185 QLVELIKEGIPAKARRKGGHPAKKVFQAIRIAVNDELGVLEESLEEAFGLLSLHGRISVI 244

Query: 249 SFHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           +F SLEDRLVK  F  ++   ++     +IP    P  F+ I KK ++PT+E++  N R+
Sbjct: 245 TFQSLEDRLVKSMFREKTSLPELPPGLPVIPREMQPE-FKLINKKPILPTEEELENNHRA 303

Query: 307 RSAKLR 312
            SAKLR
Sbjct: 304 HSAKLR 309


>gi|119493501|ref|ZP_01624168.1| S-adenosyl-methyltransferase [Lyngbya sp. PCC 8106]
 gi|119452684|gb|EAW33864.1| S-adenosyl-methyltransferase [Lyngbya sp. PCC 8106]
          Length = 291

 Score =  178 bits (452), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 123/308 (39%), Positives = 173/308 (56%), Gaps = 36/308 (11%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           H+PVL  ++IA L    G   LDAT G GG+S    +   +V   A+D+D  A++  +  
Sbjct: 6   HIPVLSRELIAGLFVVAGGHYLDATVGGGGHSLLILQAAPDVRITAIDQDEVAIAATRAR 65

Query: 78  MRD----YKEQFSLFQATFSQLQDYVPDKGV--DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           + +    + ++   ++  F+   DY P +G+  DG++ DLGV+S Q+D   RGFSF+ S 
Sbjct: 66  LAEVEPCFADRVQFWRGNFA---DYQP-QGMQFDGIIADLGVNSSQLDTPTRGFSFRHSA 121

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+    +SA+D++N  +  +L  I    GEE+ + RIA  IV+ R   PF+TT  
Sbjct: 122 PLDMRMNLQQSLSAADIINTWDEGELADIFFHYGEERLSRRIARRIVQNR---PFETTTQ 178

Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L+ +I  + Y SK+   RIHPATR FQALRI VN E+  L   L  A + LK GG + V+
Sbjct: 179 LADVI-ASCYPSKSRYGRIHPATRVFQALRIAVNQELTALETFLSRAPQWLKLGGRIGVI 237

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDR VK+ F S S                   Q +TKK +     ++A N RSRS
Sbjct: 238 SFHSLEDRRVKQSFKSDSD-----------------LQVLTKKPIQAQALEIADNPRSRS 280

Query: 309 AKLRAGMR 316
           AKLR   R
Sbjct: 281 AKLRLAER 288


>gi|163816702|ref|ZP_02208065.1| hypothetical protein COPEUT_02892 [Coprococcus eutactus ATCC 27759]
 gi|158447959|gb|EDP24954.1| hypothetical protein COPEUT_02892 [Coprococcus eutactus ATCC 27759]
          Length = 311

 Score =  178 bits (452), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 102/302 (33%), Positives = 172/302 (56%), Gaps = 9/302 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VLLE+ I  LN  P  + +D T G  G+S    +    G  +I +D+D  A++   +
Sbjct: 5   HKSVLLEETIDNLNIKPDGIYVDGTLGGAGHSEQIVRRLGEGGKLIGIDQDEDAIAAATK 64

Query: 77  TMRDYKEQFSLFQ---ATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  YK++ ++ +     F ++ D +  + VDG++ DLGVSS Q+D  DRGF+++   PL
Sbjct: 65  RLEPYKDKVTIVRDNYQNFRRILDELNIQKVDGILLDLGVSSYQLDNADRGFTYRVDAPL 124

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM      +A D+VN+    +L RIL   GEE+ A  IA+ I K RQ     TT++L+
Sbjct: 125 DMRMDNRQSKTAKDIVNEYPEAELFRILRDYGEERYAKSIAYHICKYRQDKEIDTTEELN 184

Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+ ++   ++N + HP+ ++FQA+RI +N E++ L   +     +L  GG L +++FH
Sbjct: 185 DIIRGSIPAKARNGQGHPSKQTFQAIRIELNRELDVLRDSIDGMIASLNPGGRLCIITFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK  F       +   +  + +    +  + IT+K ++P + ++  N RS+S+K
Sbjct: 245 SLEDRIVKTAFRKNENPCICPPNFPVCTCGRKSRGRVITRKPIIPGERELIENSRSKSSK 304

Query: 311 LR 312
           LR
Sbjct: 305 LR 306


>gi|149181747|ref|ZP_01860239.1| S-adenosyl-methyltransferase MraW [Bacillus sp. SG-1]
 gi|148850595|gb|EDL64753.1| S-adenosyl-methyltransferase MraW [Bacillus sp. SG-1]
          Length = 310

 Score =  178 bits (452), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 107/309 (34%), Positives = 178/309 (57%), Gaps = 13/309 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMG--SNVIALDRDPFAVSCGQ 75
           +H  VLL++ +  L+     V +D T G  G+S     ++G    +   D+D  A+   +
Sbjct: 3   EHTTVLLKETVDGLDIKEDGVYVDCTLGGAGHSEYLVSQLGVTGKLYCFDQDQTAIDHAK 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E +  Y ++ +  ++ F  +++ + ++GV   DGV+FDLGVSS Q+D  +RGFS+    P
Sbjct: 63  EKLAPYLDRVTFIRSNFRFIKEELAERGVHQVDGVMFDLGVSSPQLDTPERGFSYHHDAP 122

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM   G ++A +VVNQ   + L RI    GEEK + +IA  I   R+    +TT +L
Sbjct: 123 LDMRMDLEGDLTAHEVVNQWPYEKLVRIFFRYGEEKFSKQIARKIEAAREIKSIETTGEL 182

Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             LI++ +   ++    HPA R FQA+RI VN+E++ + + L  + + LK  G + V++F
Sbjct: 183 VDLIKEGIPAPARRKGGHPAKRVFQAIRIAVNDELDAVEEALEKSIEILKPSGRISVITF 242

Query: 251 HSLEDRLVKKFFASR-SGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           HSLEDR+ K  F  + SG  +   H +P   +A+    + +T+K ++P++E++  N R+R
Sbjct: 243 HSLEDRITKTLFKEKASGPDLP--HGLPVIPDAYKPELKLVTRKPILPSEEELERNNRAR 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRVAEK 309


>gi|325264796|ref|ZP_08131525.1| S-adenosyl-methyltransferase MraW [Clostridium sp. D5]
 gi|324030088|gb|EGB91374.1| S-adenosyl-methyltransferase MraW [Clostridium sp. D5]
          Length = 315

 Score =  178 bits (452), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 105/302 (34%), Positives = 173/302 (57%), Gaps = 9/302 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGS--NVIALDRDPFAVSCGQE 76
           H  VLLE+ +  L   P  + +DAT G GG++   C K+ S  + I +D+D  A+     
Sbjct: 9   HTSVLLEETVDGLAVKPDGIYVDATLGGGGHAFEVCSKLSSKGSFIGIDQDAAAIEAASA 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + D+ E+ ++ ++ +  ++  + + G   VDG+V DLGVSS Q+D  +RGFS++   PL
Sbjct: 69  RLLDFGERVTIIRSNYCDMKPRLHEIGIDKVDGIVLDLGVSSYQLDTAERGFSYRTDAPL 128

Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM    + +A D+VN  +  DL R++   GE++ A  IA  IV  R   P +TT  L+
Sbjct: 129 DMRMDQRQMMTAKDIVNDYSESDLYRVIRDYGEDRFAKNIAKHIVIARGKGPIETTGQLN 188

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+K +    +    HP+ R++QA+RI +N E++ L + L    + LK GG + +++FH
Sbjct: 189 EIIRKAIPMKIQKTSGHPSKRTYQAIRIELNRELDVLRETLDDMIELLKPGGRICIITFH 248

Query: 252 SLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK  F           H  +    + +  + IT+K ++P++E++  N RS+SAK
Sbjct: 249 SLEDRIVKSAFRKNENPCTCPSHFPVCVCGNVSKGKVITRKPILPSEEELEENSRSKSAK 308

Query: 311 LR 312
           LR
Sbjct: 309 LR 310


>gi|311748596|ref|ZP_07722381.1| S-adenosyl-methyltransferase MraW [Algoriphagus sp. PR1]
 gi|126577120|gb|EAZ81368.1| S-adenosyl-methyltransferase MraW [Algoriphagus sp. PR1]
          Length = 303

 Score =  178 bits (452), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 112/304 (36%), Positives = 167/304 (54%), Gaps = 15/304 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77
           H+PV+L +    L   P  + +D TFG GG+SR   K     ++   D+D  A++   E+
Sbjct: 7   HIPVMLPQCTEGLAIDPNGIYVDVTFGGGGHSREILKHLDKGHLYGFDQDEDAIANIPES 66

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
                E F+  QA F  L+ Y+   GV   DG++ DLG+SS QID   RGFS + SG LD
Sbjct: 67  -----ENFTFVQANFRDLKRYLRLHGVKKVDGILADLGISSHQIDEPSRGFSTRFSGDLD 121

Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM+ S  +SA +V+N      L ++ GI GE + A  +A A+V  R + PF+TT+  ++
Sbjct: 122 MRMNQSAELSAKEVLNTYEAHQLHKVFGIYGEIRNAKTLAQAVVSERAAQPFETTEGFTA 181

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
            ++K  Y  +        + FQALRI VN+E+  L + L  +   LK  G L+V+S+HSL
Sbjct: 182 FLKK--YAPRGKDFKYYAQVFQALRIEVNDEMGALEEMLLDSVDLLKPEGRLVVMSYHSL 239

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           EDRLVK        +    +    +   P   + +T+K V+  +E+VA N R+RSAKLR 
Sbjct: 240 EDRLVKNLIQKGKFQGEVEKDFYGNMIRP--LEPVTRKAVIADEEEVARNPRARSAKLRV 297

Query: 314 GMRT 317
             +T
Sbjct: 298 AKKT 301


>gi|295677772|ref|YP_003606296.1| S-adenosyl-methyltransferase MraW [Burkholderia sp. CCGE1002]
 gi|295437615|gb|ADG16785.1| S-adenosyl-methyltransferase MraW [Burkholderia sp. CCGE1002]
          Length = 313

 Score =  178 bits (452), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 124/311 (39%), Positives = 182/311 (58%), Gaps = 21/311 (6%)

Query: 20  HVPVLL-EKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGS--NVIALDRDPFAVSCGQ 75
           H  VLL E V AL+  A G  + D TFG GG+SR    ++G    +IA D+DP A++  Q
Sbjct: 7   HRTVLLNEAVDALVTRADGTYV-DGTFGRGGHSRLVLERLGEAGRLIAFDKDPLAIATAQ 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           +       +F++   +F+ L+  + ++GV    GV+ DLGVSS Q+D  +RGFSF+  GP
Sbjct: 66  KIA---DPRFAIVHESFASLRAAMAERGVGRVSGVLLDLGVSSPQVDDPERGFSFRADGP 122

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQT 187
           LDMRM  + G SA+D + +A V++LT ++   GEE+ A +IA A+V RR  +    P  +
Sbjct: 123 LDMRMDPTRGESAADWLARATVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLVS 182

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T +L+ ++   V   +  +  PATR+FQA+RI VN E+ EL   L +A   L+ GG L+V
Sbjct: 183 TGELAQIVANVVKTREKGK-DPATRTFQAIRIHVNQELAELQVVLEAALSLLEQGGRLVV 241

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA--HPAVFQSITKKVVVPTQEDVAFNRR 305
           +SFHSLEDR+VK+F  + +    AV   +P  A   P+    I  +V     E VA N R
Sbjct: 242 ISFHSLEDRIVKRFMQAHA-SAPAVDRRLPIRAVDLPSPPLKIIGRVFASDAE-VADNPR 299

Query: 306 SRSAKLRAGMR 316
           +RSA +R   R
Sbjct: 300 ARSAVMRVAER 310


>gi|224368376|ref|YP_002602539.1| S-adenosyl-methyltransferase MraW [Desulfobacterium autotrophicum
           HRM2]
 gi|263447343|sp|C0Q8N5|RSMH_DESAH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|223691092|gb|ACN14375.1| MraW [Desulfobacterium autotrophicum HRM2]
          Length = 312

 Score =  178 bits (452), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 112/309 (36%), Positives = 167/309 (54%), Gaps = 10/309 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYS-RSFCKMGSN--VIALDRDPFAVSCGQ 75
           +H  V+  +V   L+  PG+  +D T G  G++  S   +  N  +I +D+D  A+    
Sbjct: 4   EHRSVMPREVRDGLDLKPGETCVDCTLGGSGHAVTSLAAVLPNGRLIGIDQDLDAIENAH 63

Query: 76  ETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
               D     S+F   FS L    D +  KGVDG++ DLG+S  Q+  G RGFSF+   P
Sbjct: 64  RVFADDMANVSIFHDNFSHLPAILDSLGIKGVDGILLDLGLSLHQLRKGQRGFSFKGDEP 123

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM   + ++A+D+VN    + L  I    GEEK + +IA AIV++R SAP     +L
Sbjct: 124 LDMRMDMRTALTAADLVNTLEERALVDIFFKYGEEKMSRKIARAIVRQRASAPITRNCEL 183

Query: 192 SSLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           + +++  +        +IHPATR FQALRI VN E+E+L + L +    L  GG + ++S
Sbjct: 184 AEIVRAAIPAKIVHQQKIHPATRVFQALRISVNRELEQLERFLETFVDFLNPGGRICIIS 243

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPS-NAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK+ F +        R             +S+TK+ V+PT E++  N  +RS
Sbjct: 244 FHSLEDRMVKRRFRALEQGCTCPRDFPECVCGFKPRLKSVTKRAVMPTPEEIEINPMARS 303

Query: 309 AKLRAGMRT 317
           A+LR   R 
Sbjct: 304 ARLRVAWRV 312


>gi|293402027|ref|ZP_06646166.1| S-adenosyl-methyltransferase MraW [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291304419|gb|EFE45669.1| S-adenosyl-methyltransferase MraW [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 311

 Score =  178 bits (452), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 113/305 (37%), Positives = 171/305 (56%), Gaps = 9/305 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74
           +  H  VLL++ I  L+     + +D T G GG+S    K     ++ A DRD  A+   
Sbjct: 1   MNKHYSVLLQESIEGLHIQHDGIYVDGTLGRGGHSCEILKQIPDGHLYAFDRDASAIEES 60

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
              +    + F+   + FS L++ +   GV   DG+V DLGVSS Q D  +RGFS++   
Sbjct: 61  TPRLLQVADNFTCIHSPFSHLKEELSAYGVNRIDGLVLDLGVSSPQFDEAERGFSYRFDA 120

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  S  ++A ++VN  + +DL +I    GEE  A +IA  I K+R   P +TT +
Sbjct: 121 PLDMRMDQSQALNAYEIVNTWSYQDLVKIFYTYGEETFAKQIARNIEKKRIDKPIRTTFE 180

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I+ ++     N + HPA + FQA+RI VN+E+ EL + L+ A + L   G + V+S
Sbjct: 181 LVDVIKASLPAKVLNKKGHPAKKVFQAIRIAVNDELRELEEVLQEALQMLNPHGRICVIS 240

Query: 250 FHSLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           F SLEDR+VK+ F  ASR  +      ++PS+   A ++ I KK +   +E++  N RS 
Sbjct: 241 FQSLEDRIVKEAFQTASRPKQYDKRIPILPSDMEEAPYKLINKKPITAQEEELMENNRSH 300

Query: 308 SAKLR 312
           SAKLR
Sbjct: 301 SAKLR 305


>gi|167740320|ref|ZP_02413094.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 14]
 gi|226199616|ref|ZP_03795172.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei
           Pakistan 9]
 gi|225928362|gb|EEH24393.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei
           Pakistan 9]
          Length = 313

 Score =  178 bits (452), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 120/312 (38%), Positives = 183/312 (58%), Gaps = 21/312 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMG--SNVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  V +D TFG GG+SR+   ++G    +IA D+DP A+    E
Sbjct: 7   HRTVLLDEAVDALVTRPDGVYVDGTFGRGGHSRAVLARLGYAGRLIAFDKDPRAIETA-E 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           ++ D +  F +   +F+ ++  +  +G   V GV+ DLGVSS Q+D   RGFSF+ +GPL
Sbjct: 66  SIEDAR--FEIVHDSFAAMKGALDARGIGRVSGVLLDLGVSSPQVDDPARGFSFRANGPL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTT 188
           DMRM  + G SA++ + +A+V++LT ++   GEE+ A +IA AIV RR  +    P  +T
Sbjct: 124 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRLGPLDST 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ ++   V   +  +  PATR+FQA+RI VN E+ +L   L +A   L+ GG L+V+
Sbjct: 184 GELAQIVGHVVKTREKGK-DPATRTFQAIRIHVNQELADLQVVLEAALSLLEQGGRLVVI 242

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNRR 305
           SFHSLEDR+VK+F  + +    AV   +P  A  A   S   K++    P   +VA N R
Sbjct: 243 SFHSLEDRIVKRFLQAHA-SAPAVDRRLPIRA--ADLPSPPLKLLGRMFPNDAEVAANPR 299

Query: 306 SRSAKLRAGMRT 317
           +RSA +R   R 
Sbjct: 300 ARSAVMRIAERV 311


>gi|126454576|ref|YP_001067794.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 1106a]
 gi|134280340|ref|ZP_01767051.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 305]
 gi|167847424|ref|ZP_02472932.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei B7210]
 gi|167896013|ref|ZP_02483415.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 7894]
 gi|167904399|ref|ZP_02491604.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei NCTC
           13177]
 gi|167920627|ref|ZP_02507718.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei
           BCC215]
 gi|242314397|ref|ZP_04813413.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 1106b]
 gi|254180538|ref|ZP_04887136.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 1655]
 gi|254199129|ref|ZP_04905544.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei S13]
 gi|263446924|sp|A3NZM3|RSMH_BURP0 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|126228218|gb|ABN91758.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 1106a]
 gi|134248347|gb|EBA48430.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 305]
 gi|169656959|gb|EDS88356.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei S13]
 gi|184211077|gb|EDU08120.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 1655]
 gi|242137636|gb|EES24038.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 1106b]
          Length = 313

 Score =  178 bits (452), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 120/312 (38%), Positives = 183/312 (58%), Gaps = 21/312 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMG--SNVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  V +D TFG GG+SR+   ++G    +IA D+DP A+    E
Sbjct: 7   HRTVLLDEAVDALVTRPDGVYVDGTFGRGGHSRAVLARLGDAGRLIAFDKDPRAIETA-E 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           ++ D +  F +   +F+ ++  +  +GV    GV+ DLGVSS Q+D   RGFSF+ +GPL
Sbjct: 66  SIEDAR--FEIVHDSFAAMKGALDARGVGRVSGVLLDLGVSSPQVDDPARGFSFRANGPL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTT 188
           DMRM  + G SA++ + +A+V++LT ++   GEE+ A +IA AIV RR  +    P  +T
Sbjct: 124 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRLGPLDST 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ ++   V   +  +  PATR+FQA+RI VN E+ +L   L +A   L+ GG L+V+
Sbjct: 184 GELAQIVGHVVKTREKGK-DPATRTFQAIRIHVNQELADLQVVLEAALSLLEQGGRLVVI 242

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNRR 305
           SFHSLEDR+VK+F  + +    AV   +P  A  A   S   K++    P   +VA N R
Sbjct: 243 SFHSLEDRIVKRFLQAHA-SAPAVDRRLPIRA--ADLPSPPLKLLGRMFPNDAEVAANPR 299

Query: 306 SRSAKLRAGMRT 317
           +RSA +R   R 
Sbjct: 300 ARSAVMRIAERV 311


>gi|194476804|ref|YP_002048983.1| methyltransferase [Paulinella chromatophora]
 gi|171191811|gb|ACB42773.1| methyltransferase [Paulinella chromatophora]
          Length = 283

 Score =  178 bits (452), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 118/302 (39%), Positives = 169/302 (55%), Gaps = 28/302 (9%)

Query: 21  VPVLLEKVI-ALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           +PVL  +V+ A  +  P  VILD T G GG+S           +I LD+DP A     + 
Sbjct: 1   MPVLASQVVQAFASLPPYGVILDCTVGGGGHSSLLLNNHPKLRIIGLDQDPDAWLKANQY 60

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
           +  ++ +  L +  F+   D+VP + + GV+ DLGVSS Q++   RGFSF+  GPLDMRM
Sbjct: 61  LASFRYRTRLIKTNFA---DFVPVEPLSGVLVDLGVSSHQLEVAQRGFSFRFEGPLDMRM 117

Query: 138 SCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
           + S G +A+++VN    K+L  ++   GE++ + RIA  IV++R   PF +T+DL+ +I 
Sbjct: 118 NPSKGETAAELVNYLGEKELADLIFSYGEDRFSRRIARRIVQKR---PFNSTKDLAYVIA 174

Query: 197 KTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
                 S+  RIHPATR+FQALRI VNNE+E L   L      L  GG++ ++SFHSLED
Sbjct: 175 GCYSPKSRRGRIHPATRTFQALRIAVNNEMEVLDHLLSRIPDWLIPGGIVAIISFHSLED 234

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           R VK+ F +                     + IT K +V  + +   N RSRSAKLR   
Sbjct: 235 RRVKQAFLTDER-----------------LERITNKPLVADENERNDNSRSRSAKLRIAK 277

Query: 316 RT 317
           RT
Sbjct: 278 RT 279


>gi|254191020|ref|ZP_04897526.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei
           Pasteur 52237]
 gi|157938694|gb|EDO94364.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei
           Pasteur 52237]
          Length = 313

 Score =  178 bits (451), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 120/312 (38%), Positives = 183/312 (58%), Gaps = 21/312 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMG--SNVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  V +D TFG GG+SR+   ++G    +IA D+DP A+    E
Sbjct: 7   HRTVLLDEAVDALVTRPDGVYVDGTFGRGGHSRAVLARLGDAGRLIAFDKDPRAIETA-E 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           ++ D +  F +   +F+ ++  +  +G   V GV+ DLGVSS Q+D   RGFSF+ +GPL
Sbjct: 66  SIEDAR--FEIVHDSFAAMKGALDARGIGRVSGVLLDLGVSSPQVDDPARGFSFRANGPL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTT 188
           DMRM  + G SA++ + +A+V++LT ++   GEE+ A +IA AIV RR  +    P  +T
Sbjct: 124 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRLGPLDST 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ ++   V   +  +  PATR+FQA+RI VN E+ +L   L +A   L+ GG L+V+
Sbjct: 184 GELAQIVGHVVKTREKGK-DPATRTFQAIRIHVNQELADLQVVLEAALSLLEQGGRLVVI 242

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNRR 305
           SFHSLEDR+VK+F  + +    AV   +P  A  A   S   K++    P   +VA N R
Sbjct: 243 SFHSLEDRIVKRFLQAHA-SAPAVDRRLPIRA--ADLPSPPLKLLGRMFPNDAEVAANPR 299

Query: 306 SRSAKLRAGMRT 317
           +RSA +R   R 
Sbjct: 300 ARSAVMRIAERV 311


>gi|307711383|ref|ZP_07647801.1| S-adenosyl-methyltransferase MraW [Streptococcus mitis SK321]
 gi|307616801|gb|EFN95983.1| S-adenosyl-methyltransferase MraW [Streptococcus mitis SK321]
          Length = 316

 Score =  178 bits (451), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 111/309 (35%), Positives = 177/309 (57%), Gaps = 14/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           HV VLL + I +L+  P  + +DAT G  G+S       S   ++ A D+D  A+   Q+
Sbjct: 7   HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66

Query: 77  TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y E+   +  +  F  LQ  + + GV   DG+ +DLGVSS Q+D  +RGFS++K  
Sbjct: 67  RLAPYIEKGMVTFIKDNFRHLQTRLHEAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+  + ++A +VVN  +  DL RI    GE+K + +IA  I + R+  P +TT +
Sbjct: 127 PLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186

Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L+ +I K+   +K    + HPA + FQA+RI VN+E+    + ++ A + L   G + V+
Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMEMLALDGRISVI 245

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F   S  +V      IP +  P + + +++K ++P+ E++  N RS 
Sbjct: 246 TFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKM-ELVSRKPILPSAEELEANNRSH 304

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 305 SAKLRVARK 313


>gi|160935714|ref|ZP_02083089.1| hypothetical protein CLOBOL_00604 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441458|gb|EDP19168.1| hypothetical protein CLOBOL_00604 [Clostridium bolteae ATCC
           BAA-613]
          Length = 315

 Score =  178 bits (451), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 101/302 (33%), Positives = 177/302 (58%), Gaps = 10/302 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN-VIALDRDPFAVSCGQET 77
           H  VLL + +  LN  PG + +D T G GG++   CK +GS  +I +D+D  A+    + 
Sbjct: 8   HKSVLLYETVGSLNIKPGGLYVDGTLGGGGHAYEVCKRLGSGKLIGIDQDADAIEAAGKR 67

Query: 78  MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +  ++++ ++ ++ ++ +++ + +   +GVDG+  DLGVSS Q+D   RGF++++  PLD
Sbjct: 68  LLPFQDKVTIVRSNYANIKEVLKELEIEGVDGIYLDLGVSSYQLDTASRGFTYREDAPLD 127

Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM   + ++A+ ++N  +  +L RI+   GE+  A  IA  IV+ R   P +TT +L+ 
Sbjct: 128 MRMDQRNDVTAAHIINTYSEMELYRIIRDYGEDNFAKNIAKHIVRARGEHPIETTGELAE 187

Query: 194 LIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +I+  +    +    HPA R+FQA+RI  N+E+E L Q + +    L  GG L +++FHS
Sbjct: 188 IIKGAIPARVRATGGHPAKRTFQAIRIECNHELEVLEQSIDTMIDLLNPGGRLSIITFHS 247

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           LEDR+VK  F       +   H  P       +  + +++K ++P++E++  N RS+SAK
Sbjct: 248 LEDRIVKSRFRLNENPCICP-HDFPVCVCGRKSKGKVVSRKPILPSEEELEENSRSKSAK 306

Query: 311 LR 312
           LR
Sbjct: 307 LR 308


>gi|27904707|ref|NP_777833.1| hypothetical protein bbp206 [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
 gi|29839463|sp|P59522|RSMH_BUCBP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|27904104|gb|AAO26938.1| hypothetical protein bbp_206 [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
          Length = 315

 Score =  178 bits (451), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 111/311 (35%), Positives = 167/311 (53%), Gaps = 18/311 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76
           H PVLL + I  L+     + +DATFG GG+S+   K +G N  + ++D+DP+A+    +
Sbjct: 7   HTPVLLNETIQNLDIKNDGIYIDATFGYGGHSKEILKHLGKNGKLYSIDQDPYAIKIANK 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              D   +F++    FS +  Y         V+G++ DLG+SSMQI+  +RGFSF   GP
Sbjct: 67  LKND--TRFNIIHGKFSNILKYSNKNKIRGKVNGILLDLGMSSMQINNPNRGFSFISDGP 124

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+  +GI A   + + N+  L  +L   GEE  + +IA+ I+   +      T +L
Sbjct: 125 LDMRMNPNTGIPAYMWLKKTNLTTLYHVLKKYGEEPFSKKIAYNIIAYNKKKTITRTLEL 184

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           S +I  ++   K  R HPA R FQA+RI++N+EI EL Q L      L  GG L+++SFH
Sbjct: 185 SKIITNSIPIKKY-RKHPARRVFQAIRIYINHEIYELQQALEHVLNILIPGGKLLILSFH 243

Query: 252 SLEDRLVKKFFASRSGKV-----MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           SLEDR VKKF    S        +A+      +      + ITK  + P+  ++  N R+
Sbjct: 244 SLEDRTVKKFMIKYSKPPFVPPGLAITETQLKSLANKQLKIITK--IFPSTIEIRKNPRA 301

Query: 307 RSAKLRAGMRT 317
            SA LR   + 
Sbjct: 302 HSAILRVAQKN 312


>gi|238855278|ref|ZP_04645597.1| S-adenosyl-methyltransferase MraW [Lactobacillus jensenii 269-3]
 gi|260664637|ref|ZP_05865489.1| MraW methylase [Lactobacillus jensenii SJ-7A-US]
 gi|282932429|ref|ZP_06337854.1| S-adenosyl-methyltransferase MraW [Lactobacillus jensenii 208-1]
 gi|313471907|ref|ZP_07812399.1| S-adenosyl-methyltransferase MraW [Lactobacillus jensenii 1153]
 gi|238832170|gb|EEQ24488.1| S-adenosyl-methyltransferase MraW [Lactobacillus jensenii 269-3]
 gi|239529171|gb|EEQ68172.1| S-adenosyl-methyltransferase MraW [Lactobacillus jensenii 1153]
 gi|260561702|gb|EEX27674.1| MraW methylase [Lactobacillus jensenii SJ-7A-US]
 gi|281303378|gb|EFA95555.1| S-adenosyl-methyltransferase MraW [Lactobacillus jensenii 208-1]
          Length = 317

 Score =  178 bits (451), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 113/312 (36%), Positives = 175/312 (56%), Gaps = 17/312 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H  VLL + I  LN     + +DATFG GG++R      +N  ++  D+D +A++  ++ 
Sbjct: 7   HTSVLLRETIDNLNVKDNGLYVDATFGGGGHARYLLSKLNNGILVGFDQDNYAINAAKDN 66

Query: 78  MRDY-----KEQFSLFQATFSQLQDYVP----DKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             DY     +    +    FS + + +     + G+DG+ +DLGVSS Q D  DRGFS++
Sbjct: 67  FYDYLSDNHQPHLIMVHDNFSHVTENLNKLGFNDGIDGIYYDLGVSSPQFDQPDRGFSYR 126

Query: 129 KSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
               LDMRM+    + A  VVN  +   L  IL   G+EK + +IA  IV+RRQ  P +T
Sbjct: 127 FDARLDMRMNQEQELDAYQVVNSYSQSQLADILYQYGDEKFSRQIARKIVQRRQQKPIET 186

Query: 188 TQDLSSLIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T +L  LI++ +  +K     HPA +SFQA+R+ VN+E++ L   L+ A + LK GG + 
Sbjct: 187 TFELVELIKEAIPAAKRRTGGHPAKKSFQAIRVEVNHELDSLKASLQEAIELLKPGGRIS 246

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           V++F S ED++VKK F   S +V   R +  IP N  P + + + +K ++ T  ++A N 
Sbjct: 247 VITFQSHEDKIVKKIFKQNS-EVEVPRGIPVIPDNLKPKL-KLVNRKPILATASELADNN 304

Query: 305 RSRSAKLRAGMR 316
           RS SAKLR   +
Sbjct: 305 RSHSAKLRVAEK 316


>gi|114321350|ref|YP_743033.1| S-adenosyl-methyltransferase MraW [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|123127253|sp|Q0A6J4|RSMH_ALHEH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|114227744|gb|ABI57543.1| S-adenosyl-methyltransferase MraW [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 317

 Score =  178 bits (451), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 117/310 (37%), Positives = 169/310 (54%), Gaps = 18/310 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H PVLL++ +  L   P  V +D TFG GG++     ++G    +  +DRDP A++  + 
Sbjct: 11  HRPVLLDEALDALAIRPHGVYVDGTFGRGGHAAGILARLGPEGRLWLVDRDPEAIAVARA 70

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              D   + ++    F +L   +   G    VDG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 71  RHGD-DPRCTIAHGRFDELPGRLEAAGLLHRVDGLLLDLGVSSPQLDSAERGFSFMREGP 129

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF-QTTQD 190
           LDMRM  S G++A + + Q + K L+R L   GEE+ + RIA A+++ R+     +TT  
Sbjct: 130 LDMRMDTSRGVTAREWLEQVDEKTLSRALRDYGEERHSRRIARALIRAREDGALPETTGA 189

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ LI + V        HPATRSFQALRI +N E+E L   L      L  GG L+V+SF
Sbjct: 190 LARLIAENVPGRPEPGKHPATRSFQALRIAINGELEALDALLERICDLLAPGGRLVVISF 249

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPS-NAHPAVFQSITKKV---VVPTQEDVAFNRRS 306
           HSLEDR VK++   +S     V  + PS    P   Q   + V   + P + + A N R+
Sbjct: 250 HSLEDRRVKRYIRKQS----TVGDLPPSVPVAPEALQPRLRSVGRALRPGEAEQAANPRA 305

Query: 307 RSAKLRAGMR 316
           RSA +R   R
Sbjct: 306 RSAVMRVAER 315


>gi|315652174|ref|ZP_07905171.1| exopolyphosphatase [Eubacterium saburreum DSM 3986]
 gi|315485569|gb|EFU75954.1| exopolyphosphatase [Eubacterium saburreum DSM 3986]
          Length = 311

 Score =  178 bits (451), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 109/308 (35%), Positives = 174/308 (56%), Gaps = 8/308 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQE 76
           +H  VLL++VI  LN  P    +D T G  G++    K   G  +I +D+D  A+    E
Sbjct: 4   NHKSVLLDEVIESLNIKPDGYYVDGTLGGAGHALEVIKRLKGGRLIGIDQDADAIKAATE 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + DYK +  + +  +  ++D +  +G   VDG+  DLGVSS Q+D  DRGF+++   PL
Sbjct: 64  RLIDYKNRVIIVRDNYVNIEDILKREGIDKVDGIYVDLGVSSYQLDTADRGFTYRFDAPL 123

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM   + + ASD+VN  +  +L  ++   GE++ A  IA  IV+ R     +TT +L 
Sbjct: 124 DMRMDDRNELKASDIVNNYSEAELFHVIRDYGEDRFAKNIAKHIVEYRNKKKIETTFELV 183

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  +    +    HPA R+FQA+RI +N E+E L   +    + LK GG L V++FH
Sbjct: 184 DIIKSAIPMKIQVTGGHPAKRTFQAIRIELNKELEVLKDSIDVMIELLKPGGRLSVITFH 243

Query: 252 SLEDRLVKKFF-ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK+ F  + S  V   +  +    + +  + IT+K V+P++E++  N R++SAK
Sbjct: 244 SLEDRIVKQAFKKAESPCVCPKKFPVCVCGNKSKGRVITRKAVLPSKEELEENSRAKSAK 303

Query: 311 LRAGMRTV 318
           LR   + V
Sbjct: 304 LRVFEKEV 311


>gi|322391390|ref|ZP_08064860.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus peroris ATCC 700780]
 gi|321145816|gb|EFX41207.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus peroris ATCC 700780]
          Length = 316

 Score =  178 bits (451), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 111/309 (35%), Positives = 178/309 (57%), Gaps = 14/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           HV V+L + I +L+  P  + +DAT G  G+S       S   ++ A D+D  A+   Q+
Sbjct: 7   HVTVMLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66

Query: 77  TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y E+   +  +  F  L+D + D GV   DG+ +DLGVSS Q+D  +RGFS++K  
Sbjct: 67  RLAPYIEKGMVTFIKDNFRHLKDRLHDLGVTEIDGICYDLGVSSPQLDQRERGFSYKKDA 126

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+  + ++A +VVN  +  DL RI    GE+K + +IA  I + R+  P +TT +
Sbjct: 127 PLDMRMNQEASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQARELKPIETTTE 186

Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L+ +I K+   +K    + HPA + FQA+RI VN+E+    + ++ A + L   G + V+
Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIELLALDGRISVI 245

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F   S  +V      IP +  P +   +++K ++P++E++  N RS 
Sbjct: 246 TFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKM-GLVSRKPILPSKEELEANNRSH 304

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 305 SAKLRVARK 313


>gi|237813927|ref|YP_002898378.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei
           MSHR346]
 gi|237506330|gb|ACQ98648.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei
           MSHR346]
          Length = 313

 Score =  178 bits (451), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 118/311 (37%), Positives = 183/311 (58%), Gaps = 19/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMG--SNVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  V +D TFG GG+SR+   ++G    +IA D+DP A+    E
Sbjct: 7   HRTVLLDEAVDALVTRPDGVYVDGTFGRGGHSRAVLARLGDAGRLIAFDKDPRAIETA-E 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           ++ D +  F +   +F+ ++  +  +GV    GV+ DLGVSS Q+D   RGFSF+ +GPL
Sbjct: 66  SIEDAR--FEIVHDSFAAMKGALDARGVGRVSGVLLDLGVSSPQVDDPARGFSFRANGPL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTT 188
           DMRM  + G SA++ + +A+V++LT ++   GEE+ A +IA AIV RR  +    P  +T
Sbjct: 124 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRLGPLDST 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ ++   V   +  +  PATR+FQA+RI VN E+ +L   L +A   L+ GG L+V+
Sbjct: 184 GELAQIVGHVVKTREKGK-DPATRTFQAIRIHVNQELADLQVVLEAALSLLEQGGRLVVI 242

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA--HPAVFQSITKKVVVPTQEDVAFNRRS 306
           SFHSLEDR+VK+F  + +    AV   +P  A   P+    +  + + P   +VA N R+
Sbjct: 243 SFHSLEDRIVKRFLQAHA-SAPAVDRRLPIRAADRPSPPLKLLGR-MFPNDAEVAANPRA 300

Query: 307 RSAKLRAGMRT 317
           RSA +R   R 
Sbjct: 301 RSAVMRIAERV 311


>gi|227431984|ref|ZP_03914004.1| S-adenosyl-methyltransferase [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
 gi|227352269|gb|EEJ42475.1| S-adenosyl-methyltransferase [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
          Length = 312

 Score =  178 bits (451), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 113/309 (36%), Positives = 173/309 (55%), Gaps = 13/309 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76
           +HV VLL + IALL+  P    +DAT G GG++    K      + + D+D  A+    E
Sbjct: 4   EHVTVLLHEAIALLDIKPEGTYVDATLGGGGHTGEILKQLTTGTLYSFDQDDTAIQYNVE 63

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
              D     +  +    F  L   + D GV   +G+V+DLGVSS+Q D G RGFS++   
Sbjct: 64  QYADEIAAGKLVIIHKNFRTLTSALADYGVTAVNGIVYDLGVSSVQFDDGQRGFSYKYDA 123

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM     ++A  +VN+    +L R+L   GE++   +IA  I + R++AP  TT +
Sbjct: 124 ELDMRMDQRQALTAKTIVNEWPFNELMRVLSRYGEDRFPKQIARKIEQHRENAPINTTFE 183

Query: 191 LSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I++ +   ++    HPA RSFQA RI VN+E+  L   L  A + L   G + V++
Sbjct: 184 LVDIIKEAIPAPARRKGGHPAKRSFQAFRIAVNDELGALEDSLTQALELLATDGKISVIT 243

Query: 250 FHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           F SLEDRLVK+ F  +S   ++ A   ++P     A ++S+T+K + P+ E++A N R+ 
Sbjct: 244 FQSLEDRLVKQMFREKSSAPELPAGLPVLPGQFE-ADYESLTRKPISPSTEEMAINHRAE 302

Query: 308 SAKLRAGMR 316
           SAKLR G+R
Sbjct: 303 SAKLR-GIR 310


>gi|315304096|ref|ZP_07874497.1| S-adenosyl-methyltransferase MraW [Listeria ivanovii FSL F6-596]
 gi|313627537|gb|EFR96269.1| S-adenosyl-methyltransferase MraW [Listeria ivanovii FSL F6-596]
          Length = 312

 Score =  178 bits (451), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 104/303 (34%), Positives = 172/303 (56%), Gaps = 11/303 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VLL + + +L   P  + +DAT G  G+S           ++ A D+D  A+   + 
Sbjct: 4   HETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDNAKI 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  Y ++ +  ++ F  +++ + ++G   VDG+++DLGVSS Q+D  +RGFS+ +   L
Sbjct: 64  KLAAYSDKVTFVKSNFRYMKEALNERGISEVDGILYDLGVSSPQLDERERGFSYHQDAAL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     ++A  VVN+ + +DL RI    GEEK + +IA  I +RR+  P +TT +L 
Sbjct: 124 DMRMDREQELTAKIVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTGELV 183

Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  +   ++    HP  R+FQA+RI VN+E+  +   L  A   +  GG + V++FH
Sbjct: 184 DIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLITPGGRISVITFH 243

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+ K  F  A++   +     +IP    P  F+  T+K +VP++E++  N R+RSA
Sbjct: 244 SLEDRITKHLFQEATKGPDLPLGLPVIPDEYKPD-FKLATRKPIVPSEEELEQNNRARSA 302

Query: 310 KLR 312
           KLR
Sbjct: 303 KLR 305


>gi|149001556|ref|ZP_01826529.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           SP14-BS69]
 gi|149006085|ref|ZP_01829814.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           SP18-BS74]
 gi|237649375|ref|ZP_04523627.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae CCRI
           1974]
 gi|237821592|ref|ZP_04597437.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae CCRI
           1974M2]
 gi|147760014|gb|EDK67003.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           SP14-BS69]
 gi|147762441|gb|EDK69402.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           SP18-BS74]
          Length = 316

 Score =  178 bits (451), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 112/305 (36%), Positives = 176/305 (57%), Gaps = 14/305 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           HV VLL + I +L+  P  + +DAT G  G+S       S   ++ A D+D  A+   Q+
Sbjct: 7   HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66

Query: 77  TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y E+   +  +  F  LQ  + + GV   DG+ +DLGVSS Q+D  +RGFS++K  
Sbjct: 67  RLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+  + ++A +VVN  + +DL RI    GE+K + +IA  I + R+  P +TT +
Sbjct: 127 PLDMRMNQDASLTAYEVVNNYDYRDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186

Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L+ +I K V  +K    + HPA + FQA+RI VN+E+    + ++ A   L   G + V+
Sbjct: 187 LAEII-KLVKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVI 245

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F   S  +V      IP +  P + + +++K ++P+ E++  N RS 
Sbjct: 246 TFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKM-ELVSRKPILPSAEELEANNRSH 304

Query: 308 SAKLR 312
           SAKLR
Sbjct: 305 SAKLR 309


>gi|319939729|ref|ZP_08014086.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Streptococcus anginosus 1_2_62CV]
 gi|319811067|gb|EFW07378.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Streptococcus anginosus 1_2_62CV]
          Length = 316

 Score =  178 bits (451), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 114/309 (36%), Positives = 175/309 (56%), Gaps = 14/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQE 76
           HV VLL + I  L+  P  V +DAT G  G+S     K+G N  + A D+D  A+   Q+
Sbjct: 7   HVTVLLHETIDQLDIKPNGVYVDATLGGAGHSEYLLSKLGKNGHLYAFDQDQTAIEHAQK 66

Query: 77  TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y EQ   +     F  L+  + + GV   DG+ +DLGVSS Q+D  +RGFS+++  
Sbjct: 67  RLASYVEQGMVTFINDNFRHLKARLNELGVEEIDGICYDLGVSSPQLDERERGFSYKQDA 126

Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+    ++A +VVNQ +  DL RI    GE+K + +IA  I + R+    +TT +
Sbjct: 127 PLDMRMNREAKLTAYEVVNQYSYHDLVRIFFKYGEDKFSKQIARKIEQMREKKLIETTTE 186

Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L+ +I K+   +K    + HPA + FQA+RI VN+E+    + ++ A   L   G + V+
Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDLLAVDGRISVI 245

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F   S   V      IP N  P + + +T+K ++P++E++  N R+ 
Sbjct: 246 TFHSLEDRLTKQLFKEASTVDVPKGLPFIPENLQPKM-KLVTRKPILPSKEELDNNNRAH 304

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 305 SAKLRVAQK 313


>gi|257870252|ref|ZP_05649905.1| methyltransferase [Enterococcus gallinarum EG2]
 gi|257804416|gb|EEV33238.1| methyltransferase [Enterococcus gallinarum EG2]
          Length = 319

 Score =  178 bits (451), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 113/312 (36%), Positives = 176/312 (56%), Gaps = 13/312 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H  V+L++ +  L   P  + +D T G  G+S       S   ++ A D+D  A+   +E
Sbjct: 6   HYTVMLKETVDGLAIRPDGIYVDCTLGGAGHSEYLLSQLSEEGHLYAFDQDQKAIDHAKE 65

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y  K   +  ++ F  L++ +  +GVD   GV++DLGVSS Q+D  +RGFS+ +  
Sbjct: 66  RLAPYVAKGMVTFIKSNFRYLKEALQQQGVDQVSGVLYDLGVSSPQLDEAERGFSYHQDA 125

Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  S  ++A +VVNQ +   L +I    GEEK + +IA  I + R + P +TT +
Sbjct: 126 PLDMRMDQSAALTAYEVVNQFDYHQLVKIFFRYGEEKFSKQIAREIERTRANKPIETTGE 185

Query: 191 LSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I+  +   ++    HPA R FQA+RI VN+E+  + + L  A   L+  G + V++
Sbjct: 186 LVEIIKTAIPAPARRKGGHPAKRIFQAIRIAVNDELGVIEESLEQAIDLLEKNGRISVIT 245

Query: 250 FHSLEDRLVKKFFASRS--GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           FHSLEDR+VK  F + S    V     +IP    P V + IT+K ++P++E+V+ N RSR
Sbjct: 246 FHSLEDRIVKSTFKAYSTPKDVPPGLPIIPEEFQP-VLKLITRKPLLPSEEEVSENNRSR 304

Query: 308 SAKLRAGMRTVE 319
           SAKLR   +  E
Sbjct: 305 SAKLRIAEKMKE 316


>gi|171057205|ref|YP_001789554.1| S-adenosyl-methyltransferase MraW [Leptothrix cholodnii SP-6]
 gi|263456313|sp|B1XY20|RSMH_LEPCP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|170774650|gb|ACB32789.1| S-adenosyl-methyltransferase MraW [Leptothrix cholodnii SP-6]
          Length = 325

 Score =  178 bits (451), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 123/308 (39%), Positives = 180/308 (58%), Gaps = 15/308 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ- 75
           H  VLL + +  L   P  V LD T+G GG+SR   +       +IA+DRDP A++  + 
Sbjct: 11  HRTVLLHEAVDALVQRPAGVYLDGTYGRGGHSRLILERLDPAGRLIAIDRDPEALANARS 70

Query: 76  -ETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSG 131
            ET  D   +FS+  A F++ +  + + GV    G++ DLG+SS QID  +RGFSF+  G
Sbjct: 71  GETRID-DPRFSIHHARFAEFESVLDEAGVGQLDGLLLDLGISSPQIDNPERGFSFRFDG 129

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA-PFQTTQ 189
           PLDMRM  + G SA++ +  A  + +  ++   GEE+ A  +A AIV RR+   P Q T 
Sbjct: 130 PLDMRMDPTRGQSAAEFLASAPFERIKEVVRDYGEERFADAVAKAIVARREEGRPVQRTA 189

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           +L++L+   V   +  +  PATR+FQALRI VN E+EE+ QGL  A   L  GG L V++
Sbjct: 190 ELAALVAGAVKTRERGQ-DPATRTFQALRILVNAELEEVEQGLNRALARLAPGGRLAVIA 248

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDR+VK F A R  + +  R M  +   P + +++ +  + P + +VA N R+RSA
Sbjct: 249 FHSLEDRIVKTFIA-RHAREVYDRRMPYATPAPLLMRAVAR--IKPGEAEVAANPRARSA 305

Query: 310 KLRAGMRT 317
            LR   RT
Sbjct: 306 ILRVAERT 313


>gi|325269666|ref|ZP_08136279.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Prevotella multiformis DSM 16608]
 gi|324988034|gb|EGC20004.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Prevotella multiformis DSM 16608]
          Length = 314

 Score =  178 bits (451), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 118/305 (38%), Positives = 170/305 (55%), Gaps = 19/305 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HVPVLL++ I  LN   G + +D TFG GG+SR        GS++ + D+D       Q 
Sbjct: 9   HVPVLLDESIEGLNLHRGGIYVDVTFGGGGHSREILSRLDGGSHLYSFDQD---ADAEQN 65

Query: 77  TMR-----DYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQ 128
           T R     +   +F+  ++ F  L++++   GVD   G++ DLGVSS   D   RGFSF+
Sbjct: 66  TGRMGLSGEQVSRFTFVRSNFRYLKNWMRYYGVDKIDGLLADLGVSSHHFDDETRGFSFR 125

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
              PLDMRM+  +G +A+D++N+ +   L  I  + GE KQ+ RIA AIVK R   PF+T
Sbjct: 126 FEAPLDMRMNKRAGQTAADILNEYDEGRLADIFYLYGELKQSRRIAAAIVKARGQQPFKT 185

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T DL  L     +F +        R FQALRI VN+E++ L + L +A + LK GG L V
Sbjct: 186 THDL--LAAAEPFFPRAREKKDLARMFQALRIEVNHEMDALREMLLAATELLKPGGRLSV 243

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +++HSLEDR+VK    S + +    +        P  F+ +  KV+  T ++   N RSR
Sbjct: 244 ITYHSLEDRMVKNIMKSGNIEGKVKQDFFGRIETP--FRLVNNKVITATDDEQERNPRSR 301

Query: 308 SAKLR 312
           SAKLR
Sbjct: 302 SAKLR 306


>gi|313123436|ref|YP_004033695.1| s-adenosyl-l-methionine-dependent methyltransferase mraw
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312279999|gb|ADQ60718.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 314

 Score =  177 bits (450), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 112/307 (36%), Positives = 172/307 (56%), Gaps = 16/307 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77
           H  VLL + I  L P  G   +DATFG GG++R         N+I  D+D +A+   Q  
Sbjct: 5   HTSVLLHETIDNLAPQSGGTYVDATFGGGGHARYLLSKLDKGNLIGFDQDQYAIDTAQSN 64

Query: 78  M-----RDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
                  D + +  L    FS L++ +      G+DG+ +DLGVSS Q+D  +RGFS++ 
Sbjct: 65  FAAFLKEDSQPRLQLVHNNFSHLKEELAKLGISGIDGIYYDLGVSSPQLDQAERGFSYRF 124

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
              LDMRM  S    A  +VNQ + K L  +L   G+EK + +IA  IV+RR+  P +TT
Sbjct: 125 DARLDMRMDQSQDFDAYQLVNQYDQKQLADVLYRYGDEKFSRQIARKIVERRRVKPIETT 184

Query: 189 QDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L  +I++ +   ++ +  HPA +SFQA+R+ VN+E++ L   L  A   L  GG + V
Sbjct: 185 FELVEIIKEAIPAAARRSGGHPAKKSFQAIRVEVNHELDVLRASLEEAISLLNPGGRISV 244

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           ++F SLED++VK+ F   S +V   R M  +P    P + + + +K +  ++E++A N R
Sbjct: 245 ITFQSLEDKIVKQTFKKYS-EVEIPRGMPVVPEGIKPTL-RLVNRKPITASEEELAENNR 302

Query: 306 SRSAKLR 312
           S SAKLR
Sbjct: 303 SHSAKLR 309


>gi|115372771|ref|ZP_01460077.1| S-adenosyl-methyltransferase MraW [Stigmatella aurantiaca DW4/3-1]
 gi|115370252|gb|EAU69181.1| S-adenosyl-methyltransferase MraW [Stigmatella aurantiaca DW4/3-1]
          Length = 278

 Score =  177 bits (450), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 106/280 (37%), Positives = 159/280 (56%), Gaps = 12/280 (4%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL--- 95
           +ILD T G GG++ +    G+ VI +DRDP A++     +  +   F      F +L   
Sbjct: 1   MILDGTLGGGGHTEALLARGATVIGVDRDPVALAAATARLGGHA-HFQARAGNFGELPRV 59

Query: 96  -QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVK 154
             D +P   VDGV+ DLGVSS Q+D  +RGFSF   GPLDMRM   G +A++++ Q + +
Sbjct: 60  AADVLP---VDGVLVDLGVSSPQLDVAERGFSFNHDGPLDMRMGPEGRTAAELIAQEDER 116

Query: 155 DLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSF 214
           +L RI+  LGEE  +  IA  +   +++ P +T +   ++ +     +   RIH AT++F
Sbjct: 117 ELARIIYELGEESFSRPIAREL---KRALPTRTLEAAEAVKRAVPRKAWPKRIHVATKTF 173

Query: 215 QALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH 274
           QALR+ VN E+E L   L +  + LK GG   V++FHSLEDR VK+ F +  G       
Sbjct: 174 QALRMAVNGELEALDALLGALPRLLKVGGRAAVIAFHSLEDRKVKEAFRNLVGACRCPPG 233

Query: 275 M-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           + + +   P  F  +TKK V  ++++V  N RSRSA LRA
Sbjct: 234 LPVCACGGPGDFAPLTKKAVSASEQEVELNPRSRSAHLRA 273


>gi|306821091|ref|ZP_07454707.1| S-adenosyl-methyltransferase MraW [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304550784|gb|EFM38759.1| S-adenosyl-methyltransferase MraW [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 309

 Score =  177 bits (450), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 114/304 (37%), Positives = 163/304 (53%), Gaps = 13/304 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76
           +H  VLL + +  LN   G   +DATFG GG+S       +N+     D+D  A+  G  
Sbjct: 4   NHKSVLLYETVDSLNVKEGNTYVDATFGGGGHSGYLLSKANNINLYVFDQDEEAIKNGMN 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                          F  ++  + ++ +   DG++ DLGVSS Q+D  +RGFS+    PL
Sbjct: 64  NFAG-NNNIHFINTNFVNIKSALYERKITKIDGLIADLGVSSYQLDNAERGFSYMNDAPL 122

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM   S ++A DVVN  + + L+ I+   GEE  A +IA  IV RR      TT +L 
Sbjct: 123 DMRMDKNSPLTAYDVVNNYSKEQLSDIIRRYGEENWADKIAQVIVDRRGQKSIDTTFELV 182

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+K +    ++   HPA R+FQA+RI VNNEI+ L + L  A + L +GG L V++FH
Sbjct: 183 DVIEKAIPKKLRDKNKHPAKRTFQAIRIEVNNEIKILEKFLCDAFELLSSGGRLSVITFH 242

Query: 252 SLEDRLVKKFFASRSGKVMAVRHM---IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SLEDR VK  F    G  +  +     + +    A    ITKK +VP+ E++  N RSRS
Sbjct: 243 SLEDRAVKNIFKELVGGCICPKEFPICMCNRKEEATI--ITKKPIVPSDEELKNNPRSRS 300

Query: 309 AKLR 312
           AKLR
Sbjct: 301 AKLR 304


>gi|332203501|gb|EGJ17568.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           GA47368]
          Length = 316

 Score =  177 bits (450), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 112/309 (36%), Positives = 176/309 (56%), Gaps = 14/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           HV VLL + I +L+  P  + +DAT G  G+S       S   ++ A D+D  A+   QE
Sbjct: 7   HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQE 66

Query: 77  TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y E+   +  +  F  LQ  + + GV   DG+ +DLGVSS Q+D  +RGFS++K  
Sbjct: 67  RLALYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+  + ++A +VVN  +  DL RI    GE+K + +IA  I + R+  P +TT +
Sbjct: 127 PLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186

Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L+ +I K+   +K    + HPA + FQA+RI VN+E+    + ++ A   L   G + V+
Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVI 245

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F   S  +V      IP +  P + + +++K ++P+ E++  N RS 
Sbjct: 246 TFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKM-ELVSRKPILPSAEELEANNRSH 304

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 305 SAKLRVARK 313


>gi|282880611|ref|ZP_06289317.1| S-adenosyl-methyltransferase MraW [Prevotella timonensis CRIS
           5C-B1]
 gi|281305506|gb|EFA97560.1| S-adenosyl-methyltransferase MraW [Prevotella timonensis CRIS
           5C-B1]
          Length = 312

 Score =  177 bits (450), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 113/302 (37%), Positives = 166/302 (54%), Gaps = 13/302 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76
           HVPVLLE+ I  LN  P  + +DATFG GG+S    S      ++ + D+D  A    Q+
Sbjct: 10  HVPVLLEQSIEGLNIHPEGIYVDATFGGGGHSMEILSHLNEKGHLFSFDQDLDAEKNIQQ 69

Query: 77  TMRD--YKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
              +   ++ F+  ++ F  L++   Y   + +DG++ DLGVSS   D  +RGFSF+   
Sbjct: 70  EGHEVLLQDNFTFIRSNFRYLKNWMRYYKIEKIDGILADLGVSSHHFDDENRGFSFRFDA 129

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+  + ++A+DV+N  N + L  I  + GE K A RIA  +VK R      +T D
Sbjct: 130 PLDMRMNTKASLTAADVINTYNEEQLADIFYLYGELKNARRIASLLVKARSQKNITSTHD 189

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L   ++    F K        + FQALRI VN+E+E L + L SA++ L  GG L+V+++
Sbjct: 190 LIQAVEAV--FGKVREKKDLAKLFQALRIEVNHEMEALKELLNSAQELLTTGGRLVVITY 247

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDR+VK     ++G V               F+ +  KV+ PT ++   N RSRSAK
Sbjct: 248 HSLEDRMVKNIM--KTGNVQGKVQQDFFGRIETTFKLLNNKVITPTPQEQQENPRSRSAK 305

Query: 311 LR 312
           LR
Sbjct: 306 LR 307


>gi|169794472|ref|YP_001712265.1| S-adenosylmethionine methyltransferase [Acinetobacter baumannii
           AYE]
 gi|184159721|ref|YP_001848060.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii ACICU]
 gi|215482062|ref|YP_002324244.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii
           AB307-0294]
 gi|239501976|ref|ZP_04661286.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii AB900]
 gi|260556905|ref|ZP_05829122.1| MraW methylase [Acinetobacter baumannii ATCC 19606]
 gi|332851366|ref|ZP_08433418.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii 6013150]
 gi|332868777|ref|ZP_08438400.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii 6013113]
 gi|332873764|ref|ZP_08441706.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii 6014059]
 gi|263433333|sp|B7GVN1|RSMH_ACIB3 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263433342|sp|B2I0K7|RSMH_ACIBC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263433359|sp|B0V8N7|RSMH_ACIBY RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263437330|sp|A3M9K5|RSMH_ACIBT RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|169147399|emb|CAM85260.1| S-adenosylmethionine methyltransferase [Acinetobacter baumannii
           AYE]
 gi|183211315|gb|ACC58713.1| predicted S-adenosylmethionine-dependent methyltransferase
           [Acinetobacter baumannii ACICU]
 gi|193078572|gb|ABO13599.2| S-adenosylmethionine methyltransferase [Acinetobacter baumannii
           ATCC 17978]
 gi|213987451|gb|ACJ57750.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii
           AB307-0294]
 gi|260409511|gb|EEX02812.1| MraW methylase [Acinetobacter baumannii ATCC 19606]
 gi|322509634|gb|ADX05088.1| S-adenosylmethionine methyltransferase [Acinetobacter baumannii
           1656-2]
 gi|323519652|gb|ADX94033.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332730082|gb|EGJ61410.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii 6013150]
 gi|332733206|gb|EGJ64403.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii 6013113]
 gi|332737987|gb|EGJ68872.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii 6014059]
          Length = 307

 Score =  177 bits (450), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 122/311 (39%), Positives = 175/311 (56%), Gaps = 26/311 (8%)

Query: 20  HVPVLL-EKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDP----FAV 71
           H+ VLL E V +LL      V +DATFG GG++R    K+  N  V A D+DP     A 
Sbjct: 3   HISVLLFETVESLLADRTTGVYIDATFGRGGHTRLLLSKLDENARVYAFDKDPQALEVAA 62

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQ 128
           +  QE  R     F++  A+F+ +++ + + GV   DG++ DLGVSS Q+D  +RGFSF 
Sbjct: 63  ALAQEDPR-----FTIIHASFADIKEKMQEIGVQSVDGIMADLGVSSPQLDQAERGFSFM 117

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           + GPLDMRM  S G++A++ + +   +DL  I+   GEE+ + RIA AI   +Q+    T
Sbjct: 118 QDGPLDMRMDNSKGLTAAEWLLEVEEEDLANIIYQYGEERYSRRIARAI---KQAGKLDT 174

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T  L+ ++ KT +       HPATR+FQA+RI +N E++++   L  A   LK  G L V
Sbjct: 175 TAQLAEIV-KTAHPKWEKHKHPATRTFQAIRIAINKELDDIEVFLPQAVDLLKPKGRLSV 233

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV--VVPTQEDVAFNRR 305
           +SFHSLEDRL+K+F    S         +P      V     KK+  V  ++E+V  N R
Sbjct: 234 ISFHSLEDRLIKQFIQKESTLAEDSGWGMPQQ---QVDTRRLKKISRVRASEEEVKANPR 290

Query: 306 SRSAKLRAGMR 316
           SRSA LR   R
Sbjct: 291 SRSAWLRVAER 301


>gi|116618594|ref|YP_818965.1| SAM-dependent methyltransferase for cell envelope biogenesis
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
 gi|122271206|sp|Q03W30|RSMH_LEUMM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|116097441|gb|ABJ62592.1| SAM-dependent methyltransferase for cell envelope biogenesis
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
          Length = 312

 Score =  177 bits (450), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 113/309 (36%), Positives = 172/309 (55%), Gaps = 13/309 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76
           +HV VLL + IALL+  P    +DAT G GG++    K      + + D+D  A+    E
Sbjct: 4   EHVTVLLHEAIALLDIKPEGTYVDATLGGGGHTGEILKQLTTGTLYSFDQDDTAIQYNAE 63

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
              D     +  +    F  L   + D GV   DG+V+DLGVSS+Q D G RGFS++   
Sbjct: 64  QYADEIAAGKLVIIHKNFRTLTSALADYGVTAVDGIVYDLGVSSVQFDDGQRGFSYKYDA 123

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM     ++A  +VN+    +L R+L   GE++   +IA  I + R++AP  TT +
Sbjct: 124 ELDMRMDQRQALTAKTIVNEWPFNELMRVLSRYGEDRFPKQIARKIEQHRENAPINTTFE 183

Query: 191 LSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I++ +   ++    HPA RSFQA RI VN+E+  L   L  A + L   G + V++
Sbjct: 184 LVDIIKEAIPAPARRKGGHPAKRSFQAFRIAVNDELGALEDSLTQALELLATDGKISVIT 243

Query: 250 FHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           F SLEDRLVK+ F  +S   ++ A   ++P     A ++ +T+K + P+ E++A N R+ 
Sbjct: 244 FQSLEDRLVKQMFREKSSAPELPAGLPVLPGQFE-ADYELLTRKPISPSTEEMAINHRAE 302

Query: 308 SAKLRAGMR 316
           SAKLR G+R
Sbjct: 303 SAKLR-GIR 310


>gi|315038044|ref|YP_004031612.1| S-adenosyl-methyltransferase MraW [Lactobacillus amylovorus GRL
           1112]
 gi|312276177|gb|ADQ58817.1| S-adenosyl-methyltransferase MraW [Lactobacillus amylovorus GRL
           1112]
 gi|327183324|gb|AEA31771.1| 16S rRNA m(4)C1402 methyltranserfase [Lactobacillus amylovorus GRL
           1118]
          Length = 315

 Score =  177 bits (450), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 114/312 (36%), Positives = 172/312 (55%), Gaps = 17/312 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77
           H  VLL + I  L P  G + +DATFG GG++R          +I  D+D +A+   +  
Sbjct: 5   HTSVLLHETIDNLKPKNGGLYVDATFGGGGHARYLLSKIDTGTLIGFDQDEYAIKSAKLN 64

Query: 78  MRDYKE-----QFSLFQATFSQLQ-DYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             D  E     +  L    F+ LQ D V      G+DG+ +DLGVSS Q D  DRGFS++
Sbjct: 65  FADLLEPDSEPKLKLVHDNFTNLQRDLVELGYSDGIDGIYYDLGVSSPQFDQADRGFSYR 124

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
            +  LDMRM  S  + A  +VN  + K+L  IL   G+EK + +IA  IV+RR+  P  T
Sbjct: 125 YNARLDMRMDQSQSLDAYQLVNTLSQKELADILYKYGDEKFSRQIARKIVERRKDKPIVT 184

Query: 188 TQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T +L  +I++ +  +++    HPA +SFQALR+ VN+E++ L   L  A K L+ GG + 
Sbjct: 185 TFELVDIIKEAIPAYARRTGGHPAKKSFQALRVAVNHELDVLQASLEEAIKVLRPGGRIS 244

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           V++F S ED++VKK F   S +V   R M  +P +  P + + + +K +  +  ++  N 
Sbjct: 245 VITFQSHEDKIVKKIFKKYS-EVEVPRGMPFVPDDMKPTL-RLVNRKPITASTSELEKNN 302

Query: 305 RSRSAKLRAGMR 316
           RS SAKLR   +
Sbjct: 303 RSHSAKLRVAEK 314


>gi|168700539|ref|ZP_02732816.1| S-adenosyl-methyltransferase MraW [Gemmata obscuriglobus UQM 2246]
          Length = 341

 Score =  177 bits (450), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 115/316 (36%), Positives = 163/316 (51%), Gaps = 31/316 (9%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCG 74
           G H+PVLL +V+A L+P PG+ ++D T G  G+S    +  +    +IA D D   +   
Sbjct: 29  GAHIPVLLAEVLAALDPRPGQTVVDCTLGFAGHSLELLRRVAPDGLLIATDLDVGNIEPA 88

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +  + +    F L    F+ L   +  +GV   D V+ DLG+SSMQ+D  DRGFSF + G
Sbjct: 89  RPKLEEAGGLFGLHHTNFAGLPTVLAIEGVTAVDAVLADLGMSSMQVDDRDRGFSFMRDG 148

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM    G +A+ ++   +  +L      LG+E QA  IA A+V+ RQ+AP + T+ 
Sbjct: 149 PLDMRMDRTRGRTAAQLLATLSRDELAACFSELGDEPQAGAIADAVVRERQTAPVERTKQ 208

Query: 191 LSSLIQKTVYF----------SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           L +LI+                +   + P TR FQALRI  N E+  L Q LR     LK
Sbjct: 209 LRALIEAAAPVRIDRAPGAPPERKQLLAPVTRVFQALRILTNRELASLQQLLRVLPTVLK 268

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300
            GG+  ++SFHS EDRLVK  F  R G                V+ S++   +  T E+ 
Sbjct: 269 PGGVAAIISFHSGEDRLVKAAF--RDG------------LRAGVYSSVSPDAIRSTFEER 314

Query: 301 AFNRRSRSAKLRAGMR 316
             N R+RSAKLR   R
Sbjct: 315 RANPRARSAKLRVARR 330


>gi|241888447|ref|ZP_04775758.1| S-adenosyl-methyltransferase MraW [Gemella haemolysans ATCC 10379]
 gi|241864889|gb|EER69260.1| S-adenosyl-methyltransferase MraW [Gemella haemolysans ATCC 10379]
          Length = 311

 Score =  177 bits (450), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 109/304 (35%), Positives = 168/304 (55%), Gaps = 10/304 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H  VLL + +  L+     + +D T G  G+S    K   N  + A D+D  A+   +E 
Sbjct: 4   HYSVLLNEAVEGLDIKEDGIYVDCTLGGAGHSLEILKRLKNGKLYAFDQDNVALENAKEK 63

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           + +Y ++    ++ F  L++ + + GV   DGV++DLGVSS Q+D  +RGFS+     LD
Sbjct: 64  LAEYSDKVVFIKSNFVNLKEKLAEHGVNEVDGVLYDLGVSSPQLDTPERGFSYNYDTRLD 123

Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM     ISA +VVN+ +  DL +I    GEE  + +IA  I K+R+  P +TT +L  
Sbjct: 124 MRMDTDAKISAYEVVNEYSYHDLVKIFYRYGEENFSKQIARNIEKKREQKPIETTFELVE 183

Query: 194 LIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +I++++  +K     HPA R FQA+RI VNNE+      L  A   +  GG + V++FHS
Sbjct: 184 IIKESIPAAKRRTGGHPAKRVFQAIRIAVNNELSVFEDSLEQAIDIVSVGGRISVITFHS 243

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRSAK 310
           LEDR+ K+ F S S K   +   +P     ++   + IT+K + P+  ++  N RSRSAK
Sbjct: 244 LEDRICKQIFNSYS-KSKDIPKNLPIMPEESLSKLKVITRKPIYPSDIELEENNRSRSAK 302

Query: 311 LRAG 314
           LR  
Sbjct: 303 LRVA 306


>gi|111221622|ref|YP_712416.1| S-adenosyl-methyltransferase MraW [Frankia alni ACN14a]
 gi|123143317|sp|Q0RNP9|RSMH_FRAAA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|111149154|emb|CAJ60837.1| S-adenosyl-dependent methyl transferase [Frankia alni ACN14a]
          Length = 325

 Score =  177 bits (450), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 119/312 (38%), Positives = 185/312 (59%), Gaps = 17/312 (5%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRS----FCKMGSNVIALDRDPFAVS 72
           H PVL ++V+ LL PA   PG V++DAT G GG++ +    F ++   V+ LDRD  A++
Sbjct: 2   HTPVLTDRVLELLAPALSRPGAVVVDATVGLGGHAAALLAAFPEV--RVVGLDRDLDALA 59

Query: 73  CGQETMRDY-KEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQ 128
              E +R    E+  L  A + ++   +   G   V GV+FDLGVSS+Q+D   RGF++ 
Sbjct: 60  HSGERLRALAPERVRLVHAVYDEIGTVLAGLGSARVQGVLFDLGVSSLQLDTDARGFAYS 119

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           +  PLDMRM  + G++A++V+N  +   L RIL   GEE+ A RIA ++V+ R   PF T
Sbjct: 120 RDAPLDMRMDATRGLTAAEVLNTYDAAALARILRDYGEERFARRIAESVVRARAVEPFTT 179

Query: 188 TQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           +  L  L++  +   ++    +PA R+FQALRI VN+E++ LA+ L +A  AL  GG L+
Sbjct: 180 SARLVDLVRDAIPAPARRTGGNPAKRTFQALRIEVNSELDVLARALPAAFDALAVGGRLV 239

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           V+S+HSLEDRLVK+     +  ++     ++P+ A P   + +T+      + + A N R
Sbjct: 240 VLSYHSLEDRLVKRELRGYAETLVPPDMPVVPAGAEPR-LRWLTRGAEPAGEVEKADNPR 298

Query: 306 SRSAKLRAGMRT 317
           + S +LRA  RT
Sbjct: 299 AASVRLRAAERT 310


>gi|15895401|ref|NP_348750.1| S-adenosyl-methyltransferase MraW [Clostridium acetobutylicum ATCC
           824]
 gi|20139082|sp|Q97H81|RSMH_CLOAB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|15025123|gb|AAK80090.1|AE007714_3 Predicted S-adenosylmethionine-dependent methyltransferase,
           involved in cell envelope biogenesis YLXA B.subtilis
           ortholog [Clostridium acetobutylicum ATCC 824]
 gi|325509547|gb|ADZ21183.1| S-adenosyl-methyltransferase MraW [Clostridium acetobutylicum EA
           2018]
          Length = 312

 Score =  177 bits (450), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 112/309 (36%), Positives = 171/309 (55%), Gaps = 14/309 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
           +HVPVLLE+ I  LN     + +D T G  G+S    K  S+   +I +D+D  A+    
Sbjct: 4   NHVPVLLEETIENLNIKEDGIYVDCTLGGAGHSSEILKRLSSKGRLIGIDQDKDALKAAS 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E +++YK   +     FS +++ + +     VDG++ DLGVSS Q+D  +RGFS+    P
Sbjct: 64  ERLKEYK-NLTFVHDNFSNIKNILEELKIDKVDGILADLGVSSYQLDEPERGFSYMNDAP 122

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+  S  SA DV+N  + + L  I+   GEEK A RIA  IV++R      TT +L
Sbjct: 123 LDMRMNRDSEFSAYDVINGYDEEKLYSIIKNYGEEKFAKRIAKFIVEKRSEEAINTTFEL 182

Query: 192 SSLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
             +I+  +   F +    HPA R+FQA+RI VN E+E L + +  +   LK+ G + +++
Sbjct: 183 VDIIKAAIPAKFRRQGP-HPAKRTFQAIRIEVNQELEILNKTIEDSVDKLKSEGRICIIT 241

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           FHSLEDR+VK  +       M  +   M      P + + IT+K +  +  ++ +N RSR
Sbjct: 242 FHSLEDRIVKNKYRELQDPCMCPKDIPMCVCGKKPKI-KIITRKPIEASSYELEYNPRSR 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRVAEK 309


>gi|251783120|ref|YP_002997423.1| S-adenosyl-methyltransferase MraW [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
 gi|242391750|dbj|BAH82209.1| S-adenosyl-methyltransferase mraW [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
          Length = 337

 Score =  177 bits (450), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 113/323 (34%), Positives = 176/323 (54%), Gaps = 17/323 (5%)

Query: 5   SCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NV 61
           + K M+   HH     V VLL + + +L+  P  + +DAT G  G+S       S   ++
Sbjct: 18  TIKVMTKEFHH-----VTVLLHETVDMLDIKPNGIYVDATLGGSGHSAYLLSKLSEQGHL 72

Query: 62  IALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSM 116
              D+D  A+   Q T++ Y  K Q +  +  F  L+  +   GVD   G+++DLGVSS 
Sbjct: 73  YCFDQDQKAIDNAQVTLKSYIDKGQVTFIKDNFRHLKARLTALGVDEIDGILYDLGVSSP 132

Query: 117 QIDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175
           Q+D  +RGFS+ +  PLDMRM     ++A DVVN     DL +I    GE+K + +IA  
Sbjct: 133 QLDERERGFSYNQDAPLDMRMDRQAPLTAYDVVNTYPFNDLVKIFFKYGEDKFSKQIARK 192

Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRS 234
           I + R   P +TT +L+ LI+      +   + HPA + FQA+RI VN+E+    + ++ 
Sbjct: 193 IEQARAIKPIETTTELAELIKAAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQD 252

Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVV 293
           A + L   G + V++FHSLEDRL K+ F   S   V      IP +  P  F+ +++K +
Sbjct: 253 AMELLALDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPEDMKP-TFELVSRKPI 311

Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316
           +P+QE++A N R+ SAKLR   +
Sbjct: 312 LPSQEELAANNRAHSAKLRVAKK 334


>gi|209519087|ref|ZP_03267893.1| S-adenosyl-methyltransferase MraW [Burkholderia sp. H160]
 gi|209500459|gb|EEA00509.1| S-adenosyl-methyltransferase MraW [Burkholderia sp. H160]
          Length = 317

 Score =  177 bits (450), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 122/321 (38%), Positives = 185/321 (57%), Gaps = 20/321 (6%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGS--NVIALD 65
           M+ A+ + +     +L E V AL+    G  + D TFG GG+SR    ++G    +IA D
Sbjct: 1   MAPAMGNELQHRTVLLNEAVDALVTRTDGTYV-DGTFGRGGHSRLVLERLGEAGRLIAFD 59

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGD 122
           +DP A++  Q+       +F++   +F+ L+  + ++GV    GV+ DLGVSS Q+D  +
Sbjct: 60  KDPLAIATAQKIA---DSRFAIVHESFASLRAAMAERGVGRVSGVLLDLGVSSPQVDDPE 116

Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF+  GPLDMRM  + G SA+D + +A V++LT ++   GEE+ A +IA A+V RR 
Sbjct: 117 RGFSFRADGPLDMRMDPTRGESAADWLARATVQELTEVIRDYGEERFAFQIAKALVARRA 176

Query: 182 SA----PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
            +    P  +T +L+ ++   V   +  +  PATR+FQA+RI VN E+ EL   L +A  
Sbjct: 177 ESDRLGPLVSTGELAQIVANVVKTREKGK-DPATRTFQAIRIHVNQELAELQVVLEAALS 235

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA--HPAVFQSITKKVVVP 295
            L+ GG L+V+SFHSLEDR+VK+F  + +    AV   +P  A   P+    I  +V   
Sbjct: 236 LLEQGGRLVVISFHSLEDRIVKRFMQAHA-STPAVDRRLPIRAVDLPSPPLKIIGRVFAS 294

Query: 296 TQEDVAFNRRSRSAKLRAGMR 316
             E VA N R+RSA +R   R
Sbjct: 295 DAE-VADNPRARSAVMRVAER 314


>gi|160946332|ref|ZP_02093541.1| hypothetical protein PEPMIC_00292 [Parvimonas micra ATCC 33270]
 gi|158447448|gb|EDP24443.1| hypothetical protein PEPMIC_00292 [Parvimonas micra ATCC 33270]
          Length = 310

 Score =  177 bits (450), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 111/305 (36%), Positives = 169/305 (55%), Gaps = 14/305 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76
           +H+P++L +VI  L+  P  + +D T G  G+S    K   N  +I +D+D  A+S  ++
Sbjct: 4   NHIPIMLNEVIDNLDIKPNGIYVDLTVGGAGHSTEILKRIKNGKLICVDQDEEALSVARD 63

Query: 77  TMRDYKEQFSLFQATFS---QLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +    +    +++ F    ++ DY     VDGV+ D+GVSS QID G RGFS+    PL
Sbjct: 64  RLLKISDNVLFYKSNFENFKEILDYFGIDKVDGVLLDIGVSSYQIDNGQRGFSYMIDAPL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM      SA DVVN  N +DL  I    GEEK   RI   IV  R+    +TT +L 
Sbjct: 124 DMRMDRDLKKSAFDVVNYYNSEDLEYIFYNYGEEKWTKRIVEFIVNYRKEKLIETTFELV 183

Query: 193 SLIQKTVYFSKNNRI---HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            +I++ +   K  R    HPA R FQA+RI VN E+E + + +    + L   G L +++
Sbjct: 184 DIIERAI--PKAVRAKGGHPAKRVFQAIRIEVNRELEVIKKVIPDIVERLNKNGRLCIIT 241

Query: 250 FHSLEDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           FHSLEDR+VK  F   +   +  +  ++   N  P + + +TKK +VP++E++  N RS+
Sbjct: 242 FHSLEDRIVKDSFKELARGCICPKELYVCVCNNKPKI-KILTKKPLVPSEEEMNRNPRSK 300

Query: 308 SAKLR 312
           S+KLR
Sbjct: 301 SSKLR 305


>gi|253997377|ref|YP_003049441.1| S-adenosyl-methyltransferase MraW [Methylotenera mobilis JLW8]
 gi|253984056|gb|ACT48914.1| S-adenosyl-methyltransferase MraW [Methylotenera mobilis JLW8]
          Length = 360

 Score =  177 bits (450), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 121/322 (37%), Positives = 177/322 (54%), Gaps = 27/322 (8%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGS--NVIALDR 66
           SSA+H     H+ VLL + +  L+  P  + +D TFG GG+SR    ++G    +IA DR
Sbjct: 49  SSAVHA----HITVLLNEAVRALDIKPNGIYVDGTFGRGGHSRKILAQLGDAGRLIAFDR 104

Query: 67  DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDR 123
           D  A+  G+  + D +  F+L  + F+ ++  + + GV   DG++ DLG+SS QID  +R
Sbjct: 105 DLAAIEAGK-AIDDPR--FTLVHSHFADMRKRLAELGVQHVDGILLDLGISSPQIDEAER 161

Query: 124 GFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GFSF+   PLDMRM   SG +A+D + +   + L  ++   GEE+ A  IA AI+  R  
Sbjct: 162 GFSFRYDAPLDMRMDQSSGETAADFLGRTTEQQLAEVIKNYGEERFAKSIARAIIAERND 221

Query: 183 A-PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
                TT  L+ ++   V   +  + +PATR+FQALRIFVN E+EEL+  +    + L  
Sbjct: 222 GRAITTTGQLAQIVAGAVTRFEPGQ-NPATRTFQALRIFVNQELEELSLTMPQCLELLAP 280

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSN------AHPAVFQSITKKVVVP 295
            G L ++SFHSLEDR+VK+F   +       R  +P+N        P        K V P
Sbjct: 281 HGRLAIISFHSLEDRMVKQFIRGQED-----RDDLPANFPVRAADLPQPRLKSVGKAVKP 335

Query: 296 TQEDVAFNRRSRSAKLRAGMRT 317
           + E+V  N RSRSA LR   RT
Sbjct: 336 SDEEVRSNPRSRSAVLRVAERT 357


>gi|331701055|ref|YP_004398014.1| ribosomal RNA small subunit methyltransferase H [Lactobacillus
           buchneri NRRL B-30929]
 gi|329128398|gb|AEB72951.1| Ribosomal RNA small subunit methyltransferase H [Lactobacillus
           buchneri NRRL B-30929]
          Length = 315

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 112/304 (36%), Positives = 167/304 (54%), Gaps = 12/304 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           HV VLL + +  LN  P    +DAT G GG++    +  +N  + + D+D  A++  ++ 
Sbjct: 6   HVTVLLNEAVKGLNINPDGTYVDATLGGGGHTTKILEQLTNGHLYSFDQDEEAIAYNRQH 65

Query: 78  MRDYKE--QFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + +Y E  + +L    F  L+  + +    G+DG+V+DLGVSS Q D   RGFS++    
Sbjct: 66  LAEYIEAGKLTLIHDNFRHLKSALQNVDVSGIDGIVYDLGVSSPQFDEAGRGFSYRFDAR 125

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM     I A  +VN+   + L RI    GEEK A  IA  I   R+  P  TT DL
Sbjct: 126 LDMRMDQDNPIDAWKIVNEWPYEKLVRIFYRYGEEKFAKSIARRIETVRREHPIDTTNDL 185

Query: 192 SSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I++ +   ++ +  HPA + FQA+RI VN+E+  L   L  A   L   G + V++F
Sbjct: 186 VEVIKEGIPAAARRHGGHPAKKVFQAVRIAVNDELSALEDSLEQALDLLNVNGRISVITF 245

Query: 251 HSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
            SLEDRLVK  F  ++   ++     +IP    P  F+SIT+K +VPT+ ++  N RS S
Sbjct: 246 QSLEDRLVKTMFKEKTSLPELPPNLPIIPEGIKPK-FKSITRKPIVPTEAELEENHRSHS 304

Query: 309 AKLR 312
           AKLR
Sbjct: 305 AKLR 308


>gi|149018026|ref|ZP_01834485.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           SP23-BS72]
 gi|147931590|gb|EDK82568.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           SP23-BS72]
          Length = 316

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 112/309 (36%), Positives = 176/309 (56%), Gaps = 14/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           HV VLL + I +L+  P  + +DAT G  G+S       S   ++ A D+D  A+   Q+
Sbjct: 7   HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66

Query: 77  TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y E+   +  +  F  LQ  + + GV   DG+ +DLGVSS Q+D  +RGFS++K  
Sbjct: 67  RLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+  + ++A +VVN  +  DL RI    GE+K + +IA  I + R+  P +TT +
Sbjct: 127 PLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186

Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L+ +I K V  +K    + HPA + FQA+RI VN+E+    + ++ A   L   G + V+
Sbjct: 187 LAEII-KLVKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVI 245

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F   S  +V      IP +  P + + +++K ++P+ E++  N RS 
Sbjct: 246 TFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKM-ELVSRKPILPSAEELEANNRSH 304

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 305 SAKLRVARK 313


>gi|332076775|gb|EGI87237.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           GA17545]
          Length = 316

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 112/309 (36%), Positives = 176/309 (56%), Gaps = 14/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           HV VLL + I +L+  P  + +DAT G  G+S       S   ++ A D+D  A+   Q+
Sbjct: 7   HVTVLLHETIDMLDVKPEGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66

Query: 77  TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y E+   +  +  F  LQ  + + GV   DG+ +DLGVSS Q+D  +RGFS++K  
Sbjct: 67  RLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+  + ++A +VVN  +  DL RI    GE+K + +IA  I + R+  P +TT +
Sbjct: 127 PLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186

Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L+ +I K V  +K    + HPA + FQA+RI VN+E+    + ++ A   L   G + V+
Sbjct: 187 LAEII-KLVKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVI 245

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F   S  +V      IP +  P + + +++K ++P+ E++  N RS 
Sbjct: 246 TFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKM-ELVSRKPILPSAEELEANNRSH 304

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 305 SAKLRVARK 313


>gi|302874623|ref|YP_003843256.1| S-adenosyl-methyltransferase MraW [Clostridium cellulovorans 743B]
 gi|307690766|ref|ZP_07633212.1| S-adenosyl-methyltransferase MraW [Clostridium cellulovorans 743B]
 gi|302577480|gb|ADL51492.1| S-adenosyl-methyltransferase MraW [Clostridium cellulovorans 743B]
          Length = 311

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 111/309 (35%), Positives = 171/309 (55%), Gaps = 12/309 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           HV VLLE+ I  L+  P  + +D T G  G+S    K  ++   +I +D+D  A++  +E
Sbjct: 5   HVSVLLEECIEGLSIKPDGIYVDCTLGGAGHSFEIVKQLTSEGRLIGIDQDTNAINAAKE 64

Query: 77  TMRDYKEQFSL---FQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++DY     +   F      L++   DK VDG++ DLGVSS Q+D  +RGFS+ K  PL
Sbjct: 65  KLKDYNNVTYVHDNFHNIGEILENLNIDK-VDGILMDLGVSSHQLDVAERGFSYMKDAPL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+     SA D+VN  + + L +I+   GEEK A RIA  IVK R     +TT  L 
Sbjct: 124 DMRMNQERDFSAYDIVNTYSEEQLFKIIRDYGEEKFAKRIASFIVKNRNEKTIETTFQLV 183

Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  +   ++    HPA R+FQA+RI VN E+E L + +      L   G + +++FH
Sbjct: 184 EIIKNAIPAKARREGPHPAKRTFQAIRIEVNKELEILDKAINDGIDKLALDGRICIITFH 243

Query: 252 SLEDRLVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK  +  ++      +   +   N  P V + I++K +  + E++ +N RSRSA
Sbjct: 244 SLEDRIVKNIYKEQANPCTCPKEFPICICNRKPKV-KIISRKPIEASAEELEYNPRSRSA 302

Query: 310 KLRAGMRTV 318
           KLR   + +
Sbjct: 303 KLRVAEKIM 311


>gi|322412440|gb|EFY03348.1| S-adenosyl-methyltransferase MraW [Streptococcus dysgalactiae
           subsp. dysgalactiae ATCC 27957]
          Length = 337

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 112/323 (34%), Positives = 178/323 (55%), Gaps = 17/323 (5%)

Query: 5   SCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NV 61
           + K M+   HH     V VLL + + +L+  P  + +DAT G  G+S       S   ++
Sbjct: 18  TIKVMTKEFHH-----VTVLLHETVDMLDIKPNGIYVDATLGGSGHSAYLLSKLSEQGHL 72

Query: 62  IALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSM 116
              D+D  A+   Q  ++ Y  K Q +  +  F  L+  +   GV   DG+++DLGVSS 
Sbjct: 73  YCFDQDQKAIDNAQLILKPYIDKGQVTFIKDNFRHLKARLEALGVTEIDGILYDLGVSSP 132

Query: 117 QIDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175
           Q+D  +RGFS++++ PLDMRM     ++A DVVN     DL +I    GE+K + +IA  
Sbjct: 133 QLDEKERGFSYKQNAPLDMRMDRQAPLTAYDVVNTYPFNDLVKIFFKYGEDKFSKQIARK 192

Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRS 234
           I + R   P +TT +L+ LI+      +   + HPA + FQA+RI VN+E+    + ++ 
Sbjct: 193 IEQARAIKPIETTTELAELIKAAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQD 252

Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVV 293
           A + L   G + V++FHSLEDRL K+ F   S   V      IP +  P +F+ +++K +
Sbjct: 253 AMELLALDGRISVITFHSLEDRLTKQLFKEVSTVDVPKGLPFIPEDMKP-IFELVSRKPI 311

Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316
           +P+QE++A N R+ SAKLR   +
Sbjct: 312 LPSQEELAANNRAHSAKLRVAKK 334


>gi|148983740|ref|ZP_01817059.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           SP3-BS71]
 gi|149013058|ref|ZP_01833924.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           SP19-BS75]
 gi|168484209|ref|ZP_02709161.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           CDC1873-00]
 gi|194398555|ref|YP_002037018.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae G54]
 gi|225856075|ref|YP_002737586.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae P1031]
 gi|262825679|sp|C1CIJ8|RSMH_STRZP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262826787|sp|B5E6Z2|RSMH_STRP4 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|4009486|gb|AAC95454.1| YllC [Streptococcus pneumoniae G54]
 gi|147763093|gb|EDK70035.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           SP19-BS75]
 gi|147923887|gb|EDK74999.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           SP3-BS71]
 gi|172042545|gb|EDT50591.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           CDC1873-00]
 gi|194358222|gb|ACF56670.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae G54]
 gi|225724871|gb|ACO20723.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae P1031]
 gi|301799463|emb|CBW32003.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae OXC141]
 gi|332077620|gb|EGI88081.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           GA41301]
 gi|332202242|gb|EGJ16311.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           GA41317]
          Length = 316

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 112/309 (36%), Positives = 176/309 (56%), Gaps = 14/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           HV VLL + I +L+  P  + +DAT G  G+S       S   ++ A D+D  A+   Q+
Sbjct: 7   HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66

Query: 77  TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y E+   +  +  F  LQ  + + GV   DG+ +DLGVSS Q+D  +RGFS++K  
Sbjct: 67  RLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+  + ++A +VVN  +  DL RI    GE+K + +IA  I + R+  P +TT +
Sbjct: 127 PLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186

Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L+ +I K V  +K    + HPA + FQA+RI VN+E+    + ++ A   L   G + V+
Sbjct: 187 LAEII-KLVKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVI 245

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F   S  +V      IP +  P + + +++K ++P+ E++  N RS 
Sbjct: 246 TFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKM-ELVSRKPILPSAEELEANNRSH 304

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 305 SAKLRVARK 313


>gi|322377105|ref|ZP_08051597.1| S-adenosyl-methyltransferase MraW [Streptococcus sp. M334]
 gi|321281818|gb|EFX58826.1| S-adenosyl-methyltransferase MraW [Streptococcus sp. M334]
          Length = 316

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 111/309 (35%), Positives = 176/309 (56%), Gaps = 14/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           HV VLL + I +L   P  + +DAT G  G+S       S   ++ A D+D  A+   Q+
Sbjct: 7   HVTVLLHETIDMLEVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQQ 66

Query: 77  TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y E+   +  +  F  LQ  + + GV   DG+ +DLGVSS Q+D  +RGFS++K  
Sbjct: 67  RLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+  + ++A +VVN  +  DL RI    GE+K + +IA  I + R+  P +TT +
Sbjct: 127 PLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186

Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L+ +I K+   +K    + HPA + FQA+RI VN+E+    + ++ A + L   G + V+
Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMEMLALDGRISVI 245

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F   S  +V      IP +  P + + +++K ++P+ E++  N RS 
Sbjct: 246 TFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKM-ELVSRKPILPSAEELEANNRSH 304

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 305 SAKLRVARK 313


>gi|309799924|ref|ZP_07694128.1| S-adenosyl-methyltransferase MraW [Streptococcus infantis SK1302]
 gi|308116451|gb|EFO53923.1| S-adenosyl-methyltransferase MraW [Streptococcus infantis SK1302]
          Length = 316

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 110/309 (35%), Positives = 178/309 (57%), Gaps = 14/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           HV V+L + I +L+  P  + +DAT G  G+S       S   ++ A D+D  A+   Q+
Sbjct: 7   HVTVMLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66

Query: 77  TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y E+   +  +  F  LQ  + + GV   DG+ +DLGVSS Q+D  +RGFS++K  
Sbjct: 67  RLAPYIEKGMVTFIKDNFRHLQLRLQEAGVEEIDGICYDLGVSSPQLDQRERGFSYKKDA 126

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+  + ++A +VVN  +  DL RI    GE+K + +IA  I + R+  P +TT +
Sbjct: 127 PLDMRMNQEASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQARELKPIETTTE 186

Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L+ +I K+   +K    + HPA + FQA+RI VN+E+    + ++ A + L   G + V+
Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMELLAVDGRISVI 245

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F   S  +V      IP +  P + + +++K ++P++E++  N RS 
Sbjct: 246 TFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKM-ELVSRKPILPSKEELEANNRSH 304

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 305 SAKLRVARK 313


>gi|293610699|ref|ZP_06692999.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827043|gb|EFF85408.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 307

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 122/311 (39%), Positives = 175/311 (56%), Gaps = 26/311 (8%)

Query: 20  HVPVLL-EKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDP----FAV 71
           H+ VLL E V +LL      V +DATFG GG++R    K+  N  V A D+DP     A 
Sbjct: 3   HISVLLFETVESLLADRTTGVYIDATFGRGGHTRLLLSKLDENARVYAFDKDPQALEVAA 62

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQ 128
           +  QE  R     F++  A+F+ +++ + + GV   DG++ DLGVSS Q+D  +RGFSF 
Sbjct: 63  ALAQEDPR-----FTIIHASFADIKEKMQEIGVMSVDGIMADLGVSSPQLDQAERGFSFM 117

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           + GPLDMRM  S G++A++ + +   + L  I+   GEE+ + RIA AI   +Q+    T
Sbjct: 118 QDGPLDMRMDNSKGLTAAEWLLEIEEEQLANIIYQYGEERYSRRIAKAI---KQAGKLDT 174

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T  L+ L+ KT +       HPATR+FQA+RI +N E++++   L  A   LK  G L V
Sbjct: 175 TAQLAELV-KTAHPKWEKHKHPATRTFQAIRIAINKELDDIEVFLPQAVDLLKPKGRLSV 233

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV--VVPTQEDVAFNRR 305
           +SFHSLEDRL+K+F    S     +   +P      V     KK+  V  ++E+V  N R
Sbjct: 234 ISFHSLEDRLIKQFIQKESTLAEDIGWGMPQQ---QVDTRRLKKISRVRASEEEVKANPR 290

Query: 306 SRSAKLRAGMR 316
           SRSA LR   R
Sbjct: 291 SRSAWLRVAER 301


>gi|213158956|ref|YP_002320954.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii AB0057]
 gi|301345409|ref|ZP_07226150.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii AB056]
 gi|301596009|ref|ZP_07241017.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii AB059]
 gi|263433709|sp|B7IAX1|RSMH_ACIB5 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|213058116|gb|ACJ43018.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii AB0057]
          Length = 307

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 122/311 (39%), Positives = 174/311 (55%), Gaps = 26/311 (8%)

Query: 20  HVPVLL-EKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDP----FAV 71
           H+ VLL E V +LL      V +DATFG GG++R    K+  N  V A D+DP     A 
Sbjct: 3   HISVLLFETVESLLADRTTGVYIDATFGRGGHTRLLLSKLDENARVYAFDKDPQALEVAA 62

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQ 128
           +  QE  R     F++  A+F+ +++ + + GV   DG++ DLGVSS Q+D  +RGFSF 
Sbjct: 63  ALAQEDPR-----FTIIHASFADIKEKMQEIGVQSVDGIMADLGVSSPQLDQAERGFSFM 117

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           + GPLDMRM  S G++A + + +   +DL  I+   GEE+ + RIA AI   +Q+    T
Sbjct: 118 QDGPLDMRMDNSKGLTADEWLLEVEEEDLANIIYQYGEERYSRRIARAI---KQAGKLDT 174

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T  L+ ++ KT +       HPATR+FQA+RI +N E++++   L  A   LK  G L V
Sbjct: 175 TAQLAEIV-KTAHPKWEKHKHPATRTFQAIRIAINKELDDIEVFLPQAVDLLKPKGRLSV 233

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV--VVPTQEDVAFNRR 305
           +SFHSLEDRL+K+F    S         +P      V     KK+  V  ++E+V  N R
Sbjct: 234 ISFHSLEDRLIKQFIQKESTLAEDSGWGMPQQ---QVDTRRLKKISRVRASEEEVKANPR 290

Query: 306 SRSAKLRAGMR 316
           SRSA LR   R
Sbjct: 291 SRSAWLRVAER 301


>gi|260905297|ref|ZP_05913619.1| S-adenosyl-methyltransferase MraW [Brevibacterium linens BL2]
          Length = 320

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 109/310 (35%), Positives = 174/310 (56%), Gaps = 19/310 (6%)

Query: 20  HVPVLLEKVIALL---------NPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDP 68
           HVPVLLE+V+ L+         N  P  +++D T G GG+S +      +V  I +DRD 
Sbjct: 5   HVPVLLERVVELIGVGVQAARDNGHP-PIVVDGTLGMGGHSEAVLTAFPDVHLIGVDRDT 63

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGF 125
            A+    + +  + ++  +  A   ++ + + D GVD    V+ DLGVSS+Q+D  +RGF
Sbjct: 64  QAIDIATKRLAPFVDRTDIVHAVDDEIPEILDDLGVDRISAVLLDLGVSSLQLDEDERGF 123

Query: 126 SFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           S+ +  PLDMRM     ++A++V+      +L RIL   GEEK A RIA+ IV  R++ P
Sbjct: 124 SYSRPAPLDMRMDRTQSLTAAEVLATYPEAELRRILREYGEEKMAGRIANIIVTDRETTP 183

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           ++T+Q L++++ + +  +K  + HPA R+FQALRI VN+E+  L   L  A +AL  GG+
Sbjct: 184 WETSQQLAAMLSRVLPQTKK-KSHPAKRTFQALRIEVNDELGVLRTALPEALRALHLGGV 242

Query: 245 LIVVSFHSLEDRLVKKFF-ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            ++ S+ SLED +VKK F A  S        ++P    P     I +   +   ++   N
Sbjct: 243 AVIESYQSLEDTIVKKIFRAGTSTSAPPDMPVVPEELQPW-LSEIIRGAELADSDEADRN 301

Query: 304 RRSRSAKLRA 313
            R++S +LRA
Sbjct: 302 PRAKSVRLRA 311


>gi|328906989|gb|EGG26755.1| S-adenosyl-methyltransferase MraW [Propionibacterium sp. P08]
          Length = 346

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 111/304 (36%), Positives = 169/304 (55%), Gaps = 11/304 (3%)

Query: 20  HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCG 74
           HVPV+  +++ LL P   +  +V +D T G GG++ +      +V  + +DRD  A++  
Sbjct: 23  HVPVMRARILDLLGPTLESGRRVHVDGTLGMGGHAEAVLTRFPDVQLVGIDRDQQALTMA 82

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
              ++ + ++  L  A   +L + + D G   VD V+ DLG+SS+QID  +RGFS+    
Sbjct: 83  GARLKPFVDRVHLVHAVHDELPEVLDDLGLGRVDSVLLDLGLSSLQIDEVNRGFSYSVDS 142

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  S G +A+ V+N+++  DL RIL   GEEK A RI  AIV  R   P +T+  
Sbjct: 143 PLDMRMDQSRGRTAAQVLNESDPGDLVRILHEYGEEKFADRIVRAIVTERDRQPIETSGR 202

Query: 191 LSSLIQKTVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L  +I + +  +  ++   HPA R+FQALRI VN E+E L+  L  A   L  GG + V+
Sbjct: 203 LVEIITRAIPVAVRHKRSGHPAKRTFQALRIAVNREMETLSAVLPRALDRLNVGGRIAVL 262

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           ++HSLEDR VK+ F             I   +  A F  +T+    P  ++++ N RS S
Sbjct: 263 AYHSLEDRPVKEVFREACDDTAPAGLPIVPESMAAKFSPVTRGAERPDADEMSANPRSAS 322

Query: 309 AKLR 312
           A+LR
Sbjct: 323 ARLR 326


>gi|293364229|ref|ZP_06610955.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus oralis ATCC 35037]
 gi|307702416|ref|ZP_07639372.1| S-adenosyl-methyltransferase MraW [Streptococcus oralis ATCC 35037]
 gi|291317075|gb|EFE57502.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus oralis ATCC 35037]
 gi|307623998|gb|EFO02979.1| S-adenosyl-methyltransferase MraW [Streptococcus oralis ATCC 35037]
          Length = 316

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 111/309 (35%), Positives = 176/309 (56%), Gaps = 14/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           HV VLL + I +L+  P  + +DAT G  G+S       S   ++ A D+D  A+   Q+
Sbjct: 7   HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66

Query: 77  TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y E+   +  +  F  LQ  + + GV   DG+ +DLGVSS Q+D  +RGFS++K  
Sbjct: 67  RLAPYIEKGMVTFIKDNFRHLQARLQEAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+  + ++A +VVN  +  DL RI    GE+K + +IA  I + R+  P +TT +
Sbjct: 127 PLDMRMNQEASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186

Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L+ +I K+   +K    + HPA + FQA+RI VN+E+    + ++ A   L   G + V+
Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVI 245

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F   S  +V      IP +  P + + +++K ++P+ E++  N RS 
Sbjct: 246 TFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKM-ELVSRKPILPSAEELEANNRSH 304

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 305 SAKLRVARK 313


>gi|227550453|ref|ZP_03980502.1| S-adenosyl-methyltransferase [Enterococcus faecium TX1330]
 gi|257897144|ref|ZP_05676797.1| methyltransferase [Enterococcus faecium Com12]
 gi|293377368|ref|ZP_06623572.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium PC4.1]
 gi|227180354|gb|EEI61326.1| S-adenosyl-methyltransferase [Enterococcus faecium TX1330]
 gi|257833709|gb|EEV60130.1| methyltransferase [Enterococcus faecium Com12]
 gi|292644060|gb|EFF62166.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium PC4.1]
          Length = 319

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 114/306 (37%), Positives = 176/306 (57%), Gaps = 16/306 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H  V+L++ +  LN     V +D T G  G+S       S   ++ A D+D  A+   + 
Sbjct: 7   HYTVMLKETVDGLNIKSDGVYVDCTLGGAGHSEYLLSQLSSKGHLYAFDQDQKAIDHAKL 66

Query: 77  TMRDYKEQ--FSLFQATFSQLQD----YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +  Y EQ   +  +A F +L++    YV DK VDG+++DLGVSS Q+D  +RGFS+ + 
Sbjct: 67  RLASYVEQGMVTFIKANFRELEERLSEYV-DK-VDGILYDLGVSSPQLDEAERGFSYHQD 124

Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM  S  ++A  V+N+ +  +L +I    GEEK + +IA  I + R++ P QTT 
Sbjct: 125 APLDMRMDQSAPLTAYHVINEYSYHELVKIFFRYGEEKFSKQIAREIERVRKTKPIQTTG 184

Query: 190 DLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I++ +   ++    HPA R FQA+RI VN+E+      L  A + LK  G + V+
Sbjct: 185 ELVEIIKQVIPAPARRKGGHPAKRIFQAVRIAVNDELGAEETSLEQAIRLLKVNGRISVI 244

Query: 249 SFHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           +FHSLEDR+VK  F   S    +     +IP    P + + IT+K ++P++E++A N RS
Sbjct: 245 TFHSLEDRIVKSMFKEYSTVQDLPPGLPVIPDEFQPEL-KVITRKPILPSEEELAENNRS 303

Query: 307 RSAKLR 312
           RSAKLR
Sbjct: 304 RSAKLR 309


>gi|119588675|gb|EAW68269.1| methyltransferase 5 domain containing 1, isoform CRA_d [Homo
           sapiens]
          Length = 345

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 112/323 (34%), Positives = 167/323 (51%), Gaps = 76/323 (23%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCGQET 77
           H+PV++++V+  L+P  G++ LD TFG+GG++++  +  S+++  ALDRDP A +  +  
Sbjct: 72  HIPVMVDEVVHCLSPQKGQIFLDMTFGSGGHTKAILQKESDIVLYALDRDPTAYALAEHL 131

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              Y +Q       FSQ +  +   GV     DGV+ DLG SSMQ+D  +RGFS +K GP
Sbjct: 132 SELYPKQIRAMLGQFSQAEALLMKAGVQPGTFDGVLMDLGCSSMQLDTPERGFSLRKDGP 191

Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           LDMRM  +   +                              AI  R+            
Sbjct: 192 LDMRMDGAFPPS------------------------------AIYTRK------------ 209

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            L+Q++         H AT++FQALRIFVNNE+ EL  GL++A+K L+ GG L+ +SFHS
Sbjct: 210 DLLQRST--------HIATKTFQALRIFVNNELNELYTGLKTAQKFLRPGGRLVALSFHS 261

Query: 253 LEDRLVKKFFASRSGKV---MAVRHMIPSNAH----------------PAVFQSITKKVV 293
           LEDR+VK+F    S      ++VR  +   +                 P +++ I KKV+
Sbjct: 262 LEDRIVKRFLLGISMTERFNLSVRQQVMKTSQLGSDHENTEEVSMRRAPLMWELIHKKVL 321

Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316
            P  +DV  N R RSAKLRA ++
Sbjct: 322 SPQDQDVQDNPRGRSAKLRAAIK 344


>gi|314929325|gb|EFS93156.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL044PA1]
          Length = 337

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 111/304 (36%), Positives = 169/304 (55%), Gaps = 11/304 (3%)

Query: 20  HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCG 74
           HVPV+  +++ LL P   +  +V +D T G GG++ +      +V  + +DRD  A++  
Sbjct: 14  HVPVMRARILDLLGPTLESGRRVHVDGTLGMGGHAEAVLTRFPDVQLVGIDRDQQALTMA 73

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
              ++ + ++  L  A   +L + + D G   VD V+ DLG+SS+QID  +RGFS+    
Sbjct: 74  GARLKPFVDRVHLVHAVHDELPEVLDDLGLGRVDSVLLDLGLSSLQIDEVNRGFSYSVDS 133

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  S G +A+ V+N+++  DL RIL   GEEK A RI  AIV  R   P +T+  
Sbjct: 134 PLDMRMDQSRGRTAAQVLNESDPGDLVRILHEYGEEKFADRIVRAIVTERDRQPIETSGR 193

Query: 191 LSSLIQKTVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L  +I + +  +  ++   HPA R+FQALRI VN E+E L+  L  A   L  GG + V+
Sbjct: 194 LVEIITRAIPVAVRHKRSGHPAKRTFQALRIAVNREMETLSAVLPRALDRLNVGGRIAVL 253

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           ++HSLEDR VK+ F             I   +  A F  +T+    P  ++++ N RS S
Sbjct: 254 AYHSLEDRPVKEVFREACDDTAPAGLPIVPESMAAKFSPVTRGAERPDADEMSANPRSAS 313

Query: 309 AKLR 312
           A+LR
Sbjct: 314 ARLR 317


>gi|315611782|ref|ZP_07886704.1| S-adenosyl-methyltransferase MraW [Streptococcus sanguinis ATCC
           49296]
 gi|315316197|gb|EFU64227.1| S-adenosyl-methyltransferase MraW [Streptococcus sanguinis ATCC
           49296]
          Length = 316

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 111/309 (35%), Positives = 176/309 (56%), Gaps = 14/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           HV VLL + I +L+  P  + +DAT G  G+S       S   ++ A D+D  A+   Q+
Sbjct: 7   HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66

Query: 77  TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y E+   +  +  F  LQ  + + GV   DG+ +DLGVSS Q+D  +RGFS++K  
Sbjct: 67  RLAPYIEKGMVTFIKDNFRHLQARLQEAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+  + ++A +VVN  +  DL RI    GE+K + +IA  I + R+  P +TT +
Sbjct: 127 PLDMRMNQEASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTAE 186

Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L+ +I K+   +K    + HPA + FQA+RI VN+E+    + ++ A   L   G + V+
Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVI 245

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F   S  +V      IP +  P + + +++K ++P+ E++  N RS 
Sbjct: 246 TFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKM-ELVSRKPILPSAEELEANNRSH 304

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 305 SAKLRVARK 313


>gi|194099359|ref|YP_002002459.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae NCCP11945]
 gi|239999615|ref|ZP_04719539.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae 35/02]
 gi|240014790|ref|ZP_04721703.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae DGI18]
 gi|240017238|ref|ZP_04723778.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae FA6140]
 gi|240081125|ref|ZP_04725668.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae FA19]
 gi|240113337|ref|ZP_04727827.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae MS11]
 gi|240121313|ref|ZP_04734275.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae PID24-1]
 gi|240124146|ref|ZP_04737102.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae PID332]
 gi|260439867|ref|ZP_05793683.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae DGI2]
 gi|193934649|gb|ACF30473.1| S-adenosyl-methyltransferase [Neisseria gonorrhoeae NCCP11945]
 gi|317164866|gb|ADV08407.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 306

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 112/292 (38%), Positives = 166/292 (56%), Gaps = 20/292 (6%)

Query: 39  VILDATFGAGGYSR-SFCKMG--SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95
           V +D TFG GG+SR    ++G    +I  D+DP A++  +E  R  K +  +    F+  
Sbjct: 16  VYVDGTFGRGGHSRLILSRLGDAGRLIVFDKDPQAIAVAEELARSDK-RVGVVHGGFASF 74

Query: 96  QDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQA 151
           Q  +   G   VDG +FDLG+SS QID G RGFSF+   PLDMRM  + G+SA++ +  A
Sbjct: 75  QTALDGLGIGKVDGALFDLGISSPQIDDGSRGFSFRFDAPLDMRMDTTRGMSAAEWIAVA 134

Query: 152 NVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPAT 211
           + +DL  ++   GEE+ + +I  AIV +R  +P  TT+ L+ ++ + V   +  +  PAT
Sbjct: 135 SEQDLHEVIKNYGEERFSRQIVRAIVAQRAESPIDTTRKLAQIVAQNVRTRERGQ-DPAT 193

Query: 212 RSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMA 271
           R+FQA+RIF+N E+EE+   L      LK GG L V++FHSLEDR+VK+F      K  +
Sbjct: 194 RTFQAIRIFINRELEEVGAVLPQVMCRLKEGGRLAVIAFHSLEDRIVKQFV-----KKYS 248

Query: 272 VRHMIPSNAH------PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
               +PS A       P     I  + + P + ++A N R+RSA LR   RT
Sbjct: 249 QHEPLPSWAAVREADLPEPPLKIVGRALKPGEAEIAANPRARSAVLRVAERT 300


>gi|225858187|ref|YP_002739697.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae 70585]
 gi|298254744|ref|ZP_06978330.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae str.
           Canada MDR_19A]
 gi|298502138|ref|YP_003724078.1| S-adenosyl-methyltransferase [Streptococcus pneumoniae TCH8431/19A]
 gi|262826820|sp|C1CBB2|RSMH_STRP7 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|225720978|gb|ACO16832.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae 70585]
 gi|298237733|gb|ADI68864.1| S-adenosyl-methyltransferase [Streptococcus pneumoniae TCH8431/19A]
          Length = 316

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 112/309 (36%), Positives = 176/309 (56%), Gaps = 14/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           HV VLL + I +L+  P  + +DAT G  G+S       S   ++ A D+D  A+   Q+
Sbjct: 7   HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66

Query: 77  TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y E+   +  +  F  LQ  + + GV   DG+ +DLGVSS Q+D  +RGFS++K  
Sbjct: 67  RLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+  + ++A +VVN  +  DL RI    GE+K + +IA  I + R+  P +TT +
Sbjct: 127 PLDMRMNQDASLTAYEVVNNYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186

Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L+ +I K V  +K    + HPA + FQA+RI VN+E+    + ++ A   L   G + V+
Sbjct: 187 LAEII-KLVKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVI 245

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F   S  +V      IP +  P + + +++K ++P+ E++  N RS 
Sbjct: 246 TFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKM-ELVSRKPILPSAEELEANNRSH 304

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 305 SAKLRVARK 313


>gi|170781760|ref|YP_001710092.1| S-adenosyl-methyltransferase MraW [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|263446044|sp|B0RI49|RSMH_CLAMS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|169156328|emb|CAQ01476.1| S-adenosyl-methyltransferase [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 318

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 110/298 (36%), Positives = 162/298 (54%), Gaps = 9/298 (3%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74
           H PVLLE+ + LL PA    G V++DAT G  G+S +F     G  ++ LDRDP A++  
Sbjct: 7   HTPVLLERCLELLAPALQGEGAVLVDATLGMAGHSEAFLDALPGLRLVGLDRDPDALAIA 66

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            E +  + ++  L    +  +   +   G   V GV FDLGVSS+Q+D  +RGFS+ +  
Sbjct: 67  GERLARFGDRVHLVHTVYDGIGRALDGLGIGEVQGVFFDLGVSSLQLDRVERGFSYSQDA 126

Query: 132 PLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM   +G++A+ VV + +  +L RI    GEEK A R A  IV+ R+  P  T+  
Sbjct: 127 PLDMRMDGTAGLTAAQVVAEYDELELRRIFYDYGEEKLAPRYASRIVQAREVEPITTSAR 186

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L  +IQ+    +     HPA R FQALRI VN E+  LA+ + +A   L  GG ++V S+
Sbjct: 187 LVEIIQQATPAAVQRAGHPAKRVFQALRIEVNQELSVLARAMPAAIDRLAVGGRVVVESY 246

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
            SLEDR+VK+    RS     V   +    H    + + +   +  Q ++A N R+ S
Sbjct: 247 QSLEDRIVKRELRVRSTSTAPVGLPVELPEHRPELKLLVRGAELADQHEIAQNPRAAS 304


>gi|89898443|ref|YP_515553.1| S-adenosyl-methyltransferase MraW [Chlamydophila felis Fe/C-56]
 gi|123483153|sp|Q253Y0|RSMH_CHLFF RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|89331815|dbj|BAE81408.1| tRNA/rRNA methyltransferase [Chlamydophila felis Fe/C-56]
          Length = 298

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 116/300 (38%), Positives = 159/300 (53%), Gaps = 20/300 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALD---RDPFAVSCGQE 76
           H+PVL+ + ++L      K   D T GAGG++ +F     ++++ D   RD  A+S  +E
Sbjct: 7   HIPVLVNECLSLFADRNPKFFCDVTLGAGGHAEAFLSAYPSIVSYDGSDRDTMALSLAKE 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ-KSGPLDM 135
            +  +  +  L  A+F  L     +   DG++ DLGVSSMQ+D   RGFSFQ     LDM
Sbjct: 67  RLEKFGNRVHLHHASFEDLAQNPRENVYDGILADLGVSSMQLDTLSRGFSFQGDDHDLDM 126

Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM  S G +AS+V+N    +DL RI    GEE Q    A AIV+ R+     T +DL   
Sbjct: 127 RMDTSKGTTASEVLNTLREEDLGRIFREYGEEPQWKNAAKAIVQFRRHKKIITVRDLKEA 186

Query: 195 IQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
             +    +    +IHP T  FQALR++VN E  +L   L SA + L   G LI++SF S 
Sbjct: 187 TTRVFPSYRLRKKIHPLTLIFQALRVYVNQEDVQLKVFLESAMRWLAPEGRLIIISFCSS 246

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           EDR VK FF  R  + M V  +            +TKKVV+PT E+   N R RSAKLR 
Sbjct: 247 EDRPVKWFF--REAEAMGVGKI------------LTKKVVMPTYEETRKNPRCRSAKLRC 292


>gi|306824545|ref|ZP_07457891.1| S-adenosyl-methyltransferase MraW [Streptococcus sp. oral taxon 071
           str. 73H25AP]
 gi|304433332|gb|EFM36302.1| S-adenosyl-methyltransferase MraW [Streptococcus sp. oral taxon 071
           str. 73H25AP]
          Length = 316

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 111/309 (35%), Positives = 176/309 (56%), Gaps = 14/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           HV VLL + I +L+  P  + +DAT G  G+S       S   ++ A D+D  A+   Q+
Sbjct: 7   HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66

Query: 77  TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y E+   +  +  F  LQ  + + GV   DG+ +DLGVSS Q+D  +RGFS++K  
Sbjct: 67  RLAPYIEKGMVTFIKDNFRHLQARLQEAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+  + ++A +VVN  +  DL RI    GE+K + +IA  I + R+  P +TT +
Sbjct: 127 PLDMRMNQEASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186

Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L+ +I K+   +K    + HPA + FQA+RI VN+E+    + ++ A   L   G + V+
Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVI 245

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F   S  +V      IP +  P + + +++K ++P+ E++  N RS 
Sbjct: 246 TFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKM-ELVSRKPILPSAEELVANNRSH 304

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 305 SAKLRVARK 313


>gi|148988090|ref|ZP_01819553.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           SP6-BS73]
 gi|168494684|ref|ZP_02718827.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           CDC3059-06]
 gi|147926554|gb|EDK77627.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           SP6-BS73]
 gi|183575411|gb|EDT95939.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           CDC3059-06]
          Length = 316

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 111/309 (35%), Positives = 177/309 (57%), Gaps = 14/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           HV VLL + I +L+  P  + +DAT G  G+S       S   ++ A D+D  A+   Q+
Sbjct: 7   HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66

Query: 77  TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y E+   +  +  F  LQ  + + GV   DG+ +DLGVSS Q+D  +RGFS++K  
Sbjct: 67  RLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+  + ++A +VVN  +  DL RI    GE+K + +IA  I + R+  P +TT +
Sbjct: 127 PLDMRMNQDASLTAYEVVNNYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186

Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L+ +I K+   +K    + HPA + FQA+RI VN+E+    + ++ A + L   G + V+
Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMEMLALDGRISVI 245

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F   S  +V      IP +  P + + +++K ++P+ E++  N RS 
Sbjct: 246 TFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLRPKM-ELVSRKPILPSAEELEANNRSH 304

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 305 SAKLRVARK 313


>gi|307704193|ref|ZP_07641116.1| S-adenosyl-methyltransferase MraW [Streptococcus mitis SK597]
 gi|307622224|gb|EFO01238.1| S-adenosyl-methyltransferase MraW [Streptococcus mitis SK597]
          Length = 316

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 111/309 (35%), Positives = 176/309 (56%), Gaps = 14/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           HV VLL + I +L+  P  + +DAT G  G+S       S   ++ A D+D  A+   Q+
Sbjct: 7   HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQQ 66

Query: 77  TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y E+   +  +  F  LQ  + + GV   DG+ +DLGVSS Q+D  +RGFS++K  
Sbjct: 67  RLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+  + ++A +VVN  +  DL RI    GE+K + +IA  I + R+  P +TT +
Sbjct: 127 PLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186

Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L+ +I K+   +K    + HPA + FQA+RI VN+E+    + ++ A   L   G + V+
Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVI 245

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F   S  +V      IP +  P + + +++K ++P+ E++  N RS 
Sbjct: 246 TFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKM-ELVSRKPILPSAEELEANNRSH 304

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 305 SAKLRVARK 313


>gi|148996748|ref|ZP_01824466.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           SP11-BS70]
 gi|168576735|ref|ZP_02722593.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           MLV-016]
 gi|307066994|ref|YP_003875960.1| putative S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [Streptococcus pneumoniae
           AP200]
 gi|147757323|gb|EDK64362.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           SP11-BS70]
 gi|183577531|gb|EDT98059.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           MLV-016]
 gi|306408531|gb|ADM83958.1| Predicted S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [Streptococcus pneumoniae
           AP200]
          Length = 316

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 112/309 (36%), Positives = 176/309 (56%), Gaps = 14/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           HV VLL + I +L+  P  + +DAT G  G+S       S   ++ A D+D  A+   Q+
Sbjct: 7   HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66

Query: 77  TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y E+   +  +  F  LQ  + + GV   DG+ +DLGVSS Q+D  +RGFS++K  
Sbjct: 67  RLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+  + ++A +VVN  +  DL RI    GE+K + +IA  I + R+  P +TT +
Sbjct: 127 PLDMRMNQDASLTAYEVVNHYDYHDLIRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186

Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L+ +I K V  +K    + HPA + FQA+RI VN+E+    + ++ A   L   G + V+
Sbjct: 187 LAEII-KLVKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVI 245

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F   S  +V      IP +  P + + +++K ++P+ E++  N RS 
Sbjct: 246 TFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKM-ELVSRKPILPSAEELEANNRSH 304

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 305 SAKLRVARK 313


>gi|227503272|ref|ZP_03933321.1| S-adenosyl-methyltransferase MraW [Corynebacterium accolens ATCC
           49725]
 gi|227075775|gb|EEI13738.1| S-adenosyl-methyltransferase MraW [Corynebacterium accolens ATCC
           49725]
          Length = 346

 Score =  177 bits (448), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 117/329 (35%), Positives = 177/329 (53%), Gaps = 27/329 (8%)

Query: 10  SSAIHHTIGD---HVPVLLEKVIALLNP---APGK--VILDATFGAGGYSRSFCKM--GS 59
           ++ +++ + D   HVPV+ E++  LL P   A G   V++DAT GAGG+S  F +    +
Sbjct: 3   TTNLNYDVADNHGHVPVMRERMAELLRPGVEAAGSQAVLVDATLGAGGHSEYFLQTFPQA 62

Query: 60  NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ-----------DYVPDKGVDGVV 108
            VI +DRD  A+      +  +  +F    A F +L            D     G+ G +
Sbjct: 63  RVIGVDRDEQALQNASARLEPFSPRFCAVNARFDELGTAIAQGEGDIFDAARAHGIAGAL 122

Query: 109 FDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEK 167
           FDLGVSSMQ+D  +RGF+++   PLDMRM  S G++A+DV+N  +  DL RIL   G+E+
Sbjct: 123 FDLGVSSMQLDQAERGFAYKTDAPLDMRMDPSHGLTAADVLNTYSHGDLARILKTYGDER 182

Query: 168 QASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIE 226
            A +IA A++K R+  PF T+  L  L+  T+   ++    HPA R+FQALR+ VN E+E
Sbjct: 183 FAGKIASAVLKEREKEPFSTSGRLVELLYSTIPAATRRTGGHPAKRTFQALRVEVNRELE 242

Query: 227 ELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAV 284
            +   L     AL  G   + +S+ SLEDRLVK  F   S S     +   +P  A    
Sbjct: 243 AIENVLPVITSALSIGARAVFMSYQSLEDRLVKAAFKDLSTSTTPAGLPMDLPGTA--PE 300

Query: 285 FQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           F ++T+     +  +V  N R+ S ++RA
Sbjct: 301 FATVTRGAEKASAAEVEENSRAASVRVRA 329


>gi|168486616|ref|ZP_02711124.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           CDC1087-00]
 gi|168490752|ref|ZP_02714895.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           CDC0288-04]
 gi|183570380|gb|EDT90908.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           CDC1087-00]
 gi|183574822|gb|EDT95350.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           CDC0288-04]
 gi|301801259|emb|CBW33934.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae INV200]
 gi|327390750|gb|EGE89090.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           GA04375]
          Length = 316

 Score =  177 bits (448), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 112/305 (36%), Positives = 175/305 (57%), Gaps = 14/305 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           HV VLL + I +L+  P  + +DAT G  G+S       S   ++ A D+D  A+   Q+
Sbjct: 7   HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66

Query: 77  TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y E+   +  +  F  LQ  + + GV   DG+ +DLGVSS Q+D  +RGFS++K  
Sbjct: 67  RLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+  + ++A +VVN  +  DL RI    GE+K + +IA  I + R+  P +TT +
Sbjct: 127 PLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186

Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L+ +I K V  +K    + HPA + FQA+RI VN+E+    + ++ A   L   G + V+
Sbjct: 187 LAEII-KLVKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVI 245

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F   S  +V      IP +  P + + +++K ++P+ E++  N RS 
Sbjct: 246 TFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKM-ELVSRKPILPSAEELEANNRSH 304

Query: 308 SAKLR 312
           SAKLR
Sbjct: 305 SAKLR 309


>gi|167586011|ref|ZP_02378399.1| S-adenosyl-methyltransferase MraW [Burkholderia ubonensis Bu]
          Length = 313

 Score =  177 bits (448), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 117/312 (37%), Positives = 183/312 (58%), Gaps = 21/312 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGS--NVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  + +D TFG GG+SR+   ++G+   +IA D+DP A+   Q 
Sbjct: 7   HRTVLLDEAVDALVTRPDGIYVDGTFGRGGHSRAVLARLGAAGRLIAFDKDPRAIETAQ- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + D +  F++   +F+ +Q  +  +G   V GV+ DLGVSS Q+D   RGFSF+  GPL
Sbjct: 66  GIEDAR--FAIVHDSFASMQGALAARGIGKVSGVLLDLGVSSPQVDDPQRGFSFRADGPL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTT 188
           DMRM  + G SA++ + +A++++LT ++   GEE+ A +IA A+V RR  +    P  +T
Sbjct: 124 DMRMDPTRGESAAEWLARASLQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDST 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ ++   V   +  +  PATR+FQA+RI VN E+ +L   L +A   L+ GG L+V+
Sbjct: 184 GELAQIVGHVVKTREKGK-DPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVI 242

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNRR 305
           SFHSLEDR+VK+F  + +    AV   +P  A      S   K++    P+  +VA N R
Sbjct: 243 SFHSLEDRIVKRFMQAHA-SAPAVDRRLPIRA--VDLPSPPLKIIGRKFPSDAEVAANPR 299

Query: 306 SRSAKLRAGMRT 317
           +RSA +R   R 
Sbjct: 300 ARSAVMRIAERV 311


>gi|123967726|ref|YP_001008584.1| S-adenosylmethionine-dependent methyltransferase [Prochlorococcus
           marinus str. AS9601]
 gi|262824992|sp|A2BNW6|RSMH_PROMS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|123197836|gb|ABM69477.1| Predicted S-adenosylmethionine-dependent methyltransferase
           [Prochlorococcus marinus str. AS9601]
          Length = 300

 Score =  177 bits (448), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 112/310 (36%), Positives = 174/310 (56%), Gaps = 42/310 (13%)

Query: 19  DHVPVLLEKVIALLNPAPGKVI-------LDATFGAGGYSRSFCKMGS--NVIALDRDPF 69
           +H  V+ ++++A L   P  +I       +DAT G GG+S    +  S  N+I LD+DPF
Sbjct: 12  NHQSVMTDEIMASLEHYP--LIHNNQLKGIDATLGGGGHSYHLLRKYSDLNIIGLDQDPF 69

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
           A     + + ++K +  +  + F+   D+VP + V  V+ DLGV+S QID   RGFSFQK
Sbjct: 70  ARKSASKKLDEFKNRIDIRASNFA---DFVPKEKVSFVIADLGVNSNQIDDPKRGFSFQK 126

Query: 130 SGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI-VKRRQSAPFQT 187
            GPLDMRM+    + A  ++   N KDL  ++   GEE+ + +IA  I +  +++  +  
Sbjct: 127 DGPLDMRMNPFLDVDADKLIEALNEKDLANLIYKYGEERLSRKIARKIKLDLKENGKYSG 186

Query: 188 TQDLSSLIQ-----KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           T++L+  I      K  Y     +IHPATR+FQALRI VN EIE L + L+   + L  G
Sbjct: 187 TKELAYSIAGCFPPKQRY----KKIHPATRTFQALRIAVNKEIEVLEKFLQVVPEWLLPG 242

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G++ ++SFHSLEDRLVK  F +                     +++TKK + P+++++  
Sbjct: 243 GIISIISFHSLEDRLVKSCFKNDQR-----------------LKNLTKKPITPSEQEIEL 285

Query: 303 NRRSRSAKLR 312
           N+R+RS KLR
Sbjct: 286 NKRARSGKLR 295


>gi|168490031|ref|ZP_02714230.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae SP195]
 gi|182683307|ref|YP_001835054.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae CGSP14]
 gi|221231213|ref|YP_002510365.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae ATCC
           700669]
 gi|298230654|ref|ZP_06964335.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae str.
           Canada MDR_19F]
 gi|262827179|sp|B8ZL51|RSMH_STRPJ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262827224|sp|B2ISQ2|RSMH_STRPS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|182628641|gb|ACB89589.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae CGSP14]
 gi|183571591|gb|EDT92119.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae SP195]
 gi|220673673|emb|CAR68164.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae ATCC
           700669]
 gi|332075180|gb|EGI85650.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           GA17570]
          Length = 316

 Score =  177 bits (448), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 112/305 (36%), Positives = 175/305 (57%), Gaps = 14/305 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           HV VLL + I +L+  P  + +DAT G  G+S       S   ++ A D+D  A+   Q+
Sbjct: 7   HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66

Query: 77  TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y E+   +  +  F  LQ  + + GV   DG+ +DLGVSS Q+D  +RGFS++K  
Sbjct: 67  RLAPYIEKGMVTFIKDNFRHLQARLRETGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+  + ++A +VVN  +  DL RI    GE+K + +IA  I + R+  P +TT +
Sbjct: 127 PLDMRMNQDASLTAYEVVNNYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186

Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L+ +I K V  +K    + HPA + FQA+RI VN+E+    + ++ A   L   G + V+
Sbjct: 187 LAEII-KLVKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVI 245

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F   S  +V      IP +  P + + +++K ++P+ E++  N RS 
Sbjct: 246 TFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKM-ELVSRKPILPSAEELEANNRSH 304

Query: 308 SAKLR 312
           SAKLR
Sbjct: 305 SAKLR 309


>gi|15902346|ref|NP_357896.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae R6]
 gi|116515442|ref|YP_815821.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae D39]
 gi|225853917|ref|YP_002735429.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae JJA]
 gi|30315982|sp|P59658|RSMH_STRR6 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|122279293|sp|Q04MC7|RSMH_STRP2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262825666|sp|C1CCA8|RSMH_STRZJ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|1524350|emb|CAB01927.1| OrfD [Streptococcus pneumoniae]
 gi|15457856|gb|AAK99106.1| YllC protein [Streptococcus pneumoniae R6]
 gi|116076018|gb|ABJ53738.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae D39]
 gi|225724201|gb|ACO20054.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae JJA]
          Length = 316

 Score =  177 bits (448), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 112/305 (36%), Positives = 175/305 (57%), Gaps = 14/305 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           HV VLL + I +L+  P  + +DAT G  G+S       S   ++ A D+D  A+   Q+
Sbjct: 7   HVTVLLHETIDMLDVKPEGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66

Query: 77  TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y E+   +  +  F  LQ  + + GV   DG+ +DLGVSS Q+D  +RGFS++K  
Sbjct: 67  RLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+  + ++A +VVN  +  DL RI    GE+K + +IA  I + R+  P +TT +
Sbjct: 127 PLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186

Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L+ +I K V  +K    + HPA + FQA+RI VN+E+    + ++ A   L   G + V+
Sbjct: 187 LAEII-KLVKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVI 245

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F   S  +V      IP +  P + + +++K ++P+ E++  N RS 
Sbjct: 246 TFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKM-ELVSRKPILPSAEELEANNRSH 304

Query: 308 SAKLR 312
           SAKLR
Sbjct: 305 SAKLR 309


>gi|229013103|ref|ZP_04170268.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           mycoides DSM 2048]
 gi|229134728|ref|ZP_04263537.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus BDRD-ST196]
 gi|228648774|gb|EEL04800.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus BDRD-ST196]
 gi|228748357|gb|EEL98217.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           mycoides DSM 2048]
          Length = 302

 Score =  177 bits (448), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 108/298 (36%), Positives = 167/298 (56%), Gaps = 11/298 (3%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDY 81
           +++ +  L+  P    +D T G GG+S         G  +IA D+D  A+   +E    Y
Sbjct: 1   MKETVDGLDIKPSGTYVDCTLGGGGHSSYLLSQLTDGGKLIAFDQDEIAIQNAKEKFSSY 60

Query: 82  KEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138
            EQF   ++ F  L + + + G   VDG++FDLGVSS Q+D  +RGFS+    PLDMRM 
Sbjct: 61  GEQFVTVKSNFRYLSEKLHELGITEVDGILFDLGVSSPQLDTPERGFSYHHDAPLDMRMD 120

Query: 139 CSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK 197
               ++A DVVN  + + L RI    GEEK + +I   I   R++   +TT +L  LI++
Sbjct: 121 QDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQITRKIEAYRENKAIETTGELVELIKE 180

Query: 198 TVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
            +   ++    HPA R FQA+RI VN+E++   + L SA   +K GG + V++FHSLEDR
Sbjct: 181 GIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIDMVKPGGRVSVITFHSLEDR 240

Query: 257 LVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           + K  F   S + ++     +IP    P + + IT+K ++P+  ++  N R+RSAKLR
Sbjct: 241 ICKTTFKRNSTTPQLPQGLPIIPDEFKPKL-KLITRKPILPSDIELEENNRARSAKLR 297


>gi|20138864|sp|O07665|RSMH_ENTHR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|2624083|emb|CAA74239.1| mraW [Enterococcus hirae]
          Length = 319

 Score =  177 bits (448), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 114/309 (36%), Positives = 176/309 (56%), Gaps = 22/309 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQE 76
           H  V+L++ +  LN  P  + +D T G  G+S     ++ +N  + A D+D  A+   + 
Sbjct: 7   HYTVMLKETVDGLNIKPDGIYVDCTLGGAGHSEYLLSQLNTNGHLYAFDQDQKAIDHAKV 66

Query: 77  TMRDYKEQ--FSLFQATFSQLQ----DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +  Y E+   +  +A F +L+    ++VP   VDG+++DLGVSS Q+D  +RGFS+ + 
Sbjct: 67  RLAPYIEKGMVTFIKANFRELEAKIKEHVPQ--VDGILYDLGVSSPQLDEAERGFSYHQD 124

Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM  S  +SA DVVN+ +  +L +I    GEEK + +IA  I + R+  P QTT 
Sbjct: 125 APLDMRMDQSAPLSAYDVVNEYSYNELVKIFFRYGEEKFSKQIAREIERVRKIHPIQTTG 184

Query: 190 DLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I+  +   ++    HPA R FQA+RI VN+E+      L  A + LK  G + V+
Sbjct: 185 ELVEIIKDVIPAPARRKGGHPAKRIFQAIRIAVNDELGAEEASLEQAIRLLKINGRISVI 244

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPS-NAHPAVFQS----ITKKVVVPTQEDVAFN 303
           +FHSLEDR+VK  F   S     V+ + P     P  FQ     I +K ++P++E+++ N
Sbjct: 245 TFHSLEDRIVKSMFKEYS----TVQDLPPGLPVVPEEFQPELKLINRKPILPSEEELSEN 300

Query: 304 RRSRSAKLR 312
            RSRSAKLR
Sbjct: 301 NRSRSAKLR 309


>gi|218133493|ref|ZP_03462297.1| hypothetical protein BACPEC_01360 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990868|gb|EEC56874.1| hypothetical protein BACPEC_01360 [Bacteroides pectinophilus ATCC
           43243]
          Length = 312

 Score =  177 bits (448), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 104/311 (33%), Positives = 172/311 (55%), Gaps = 19/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VLL++ I  LN  P  + +D T G GG+S    K    G  +I +D+D  A+   +E
Sbjct: 5   HKSVLLDETIESLNIKPNGIYVDGTLGGGGHSYEIAKRLTDGGRLIGIDQDEDAIRAAKE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + ++ ++ ++ +  +  +   + + GV   DG++ D+GVSS Q+D  +RGF++++  PL
Sbjct: 65  RLSEFADRVTIVRDNYCNMPKVLDELGVSKVDGILLDIGVSSYQLDEAERGFTYKQDAPL 124

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     ++A D+VN  + +DL RI+   GE+K A  IA  IV+ RQ  P +TT +L 
Sbjct: 125 DMRMDQRQEMTAKDIVNGYSEEDLYRIIRDYGEDKFAKNIAKHIVQARQIKPVETTFELD 184

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  +    +    HPA ++FQA+RI +N E+E L + + +    L   G L +++FH
Sbjct: 185 EIIKAAIPMKFRATGGHPAKKTFQAIRIELNRELEVLDESIDAMTDLLNDNGRLCIITFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF------QSITKKVVVPTQEDVAFNRR 305
           SLEDR+VK  F              P +    V       + IT+K +VP +E++  N+R
Sbjct: 245 SLEDRIVKTRFRKNENPCTC-----PPDFPVCVCGKKPKGKVITRKPIVPDEEELEENKR 299

Query: 306 SRSAKLRAGMR 316
           ++S+KLR   R
Sbjct: 300 AKSSKLRVFER 310


>gi|256850925|ref|ZP_05556314.1| MraW methylase [Lactobacillus jensenii 27-2-CHN]
 gi|260661139|ref|ZP_05862053.1| MraW methylase [Lactobacillus jensenii 115-3-CHN]
 gi|282934162|ref|ZP_06339440.1| S-adenosyl-methyltransferase MraW [Lactobacillus jensenii 208-1]
 gi|297205805|ref|ZP_06923200.1| S-adenosyl-methyltransferase MraW [Lactobacillus jensenii JV-V16]
 gi|256615987|gb|EEU21175.1| MraW methylase [Lactobacillus jensenii 27-2-CHN]
 gi|260548076|gb|EEX24052.1| MraW methylase [Lactobacillus jensenii 115-3-CHN]
 gi|281301776|gb|EFA94042.1| S-adenosyl-methyltransferase MraW [Lactobacillus jensenii 208-1]
 gi|297148931|gb|EFH29229.1| S-adenosyl-methyltransferase MraW [Lactobacillus jensenii JV-V16]
          Length = 317

 Score =  177 bits (448), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 114/312 (36%), Positives = 176/312 (56%), Gaps = 17/312 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSNV-IALDRDPFAVSCGQET 77
           H  VLL + I  LN     + +DATFG GG++R    K+ + V +  D+D +A++  ++ 
Sbjct: 7   HTSVLLRETIDNLNVKDEGLYVDATFGGGGHARYLLSKLNTGVLVGFDQDNYAINAAKDN 66

Query: 78  MRDY-----KEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             +Y     + Q  +    FS L D +       G+DG+ +DLGVSS Q D  DRGFS++
Sbjct: 67  FSEYLSGNHQPQLIMVHDNFSHLTDNLNKLGIKDGIDGIYYDLGVSSPQFDQPDRGFSYR 126

Query: 129 KSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
               LDMRM+    + A  VVN  +   L  +L   G+EK + +IA  IV+RRQ  P +T
Sbjct: 127 FDARLDMRMNQEQELDAYQVVNSYSQSQLADVLYQYGDEKFSRQIARKIVQRRQQKPIET 186

Query: 188 TQDLSSLIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T +L  LI++ +  +K     HPA +SFQA+R+ VN+E++ L   L+ A + L+ GG + 
Sbjct: 187 TFELVELIKEAIPAAKRRTGGHPAKKSFQAIRVEVNHELDSLKASLQEAIELLRPGGRIS 246

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           V++F S ED++VKK F   S +V   R   +IP N  P + + + +K ++ T  ++A N 
Sbjct: 247 VITFQSHEDKIVKKIFKENS-EVDVPRGIPIIPDNLKPKL-KLVNRKPILATASELANNN 304

Query: 305 RSRSAKLRAGMR 316
           RS SAKLR   +
Sbjct: 305 RSHSAKLRVAEK 316


>gi|325971088|ref|YP_004247279.1| ribosomal RNA small subunit methyltransferase H [Spirochaeta sp.
           Buddy]
 gi|324026326|gb|ADY13085.1| Ribosomal RNA small subunit methyltransferase H [Spirochaeta sp.
           Buddy]
          Length = 296

 Score =  177 bits (448), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 122/305 (40%), Positives = 173/305 (56%), Gaps = 30/305 (9%)

Query: 20  HVPVLLEKVIALLNPAPGK--VILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQ 75
           H  V+ ++V+  L    G+   ++D T G GG++  F     N  VI LDRD        
Sbjct: 5   HYSVMAQEVLQYLVVPEGREATMVDCTCGEGGHTHLFLSTHPNLKVIGLDRDTTIQQKAI 64

Query: 76  ETMRDYKEQFS----LFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           E M+++  +F      F   F+Q ++ V     D ++FDLG+SS   +   RGFSF+K  
Sbjct: 65  ERMKEFGSRFEPKNIWFNDFFAQGEENV----YDLILFDLGISSFHYEESHRGFSFRKDE 120

Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMR+  S  ISA DVVN    + L  ++   GEE+ + RIA +IV+RR+ A   T+++
Sbjct: 121 VLDMRLDESASISAFDVVNGYQEERLADVIFNFGEERYSRRIARSIVERRKLAKISTSEE 180

Query: 191 LSSLIQKTVYFSKNNR---IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           L+S+I K V    N R   IHPATR+FQA+RI VN E++ +   L+ A KALK+GG + V
Sbjct: 181 LASIIYKAV--PPNYRYGHIHPATRTFQAIRIEVNRELDRIEPALKGAVKALKSGGRIAV 238

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +SFHSLEDR VK  F     K MA          PA+ + +TKK ++PT ++   N  SR
Sbjct: 239 ISFHSLEDRQVKWLF-----KGMA------EGDEPAI-RILTKKPLIPTDQEREENAASR 286

Query: 308 SAKLR 312
           SAKLR
Sbjct: 287 SAKLR 291


>gi|150016452|ref|YP_001308706.1| S-adenosyl-methyltransferase MraW [Clostridium beijerinckii NCIMB
           8052]
 gi|263446053|sp|A6LTS0|RSMH_CLOB8 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|149902917|gb|ABR33750.1| S-adenosyl-methyltransferase MraW [Clostridium beijerinckii NCIMB
           8052]
          Length = 310

 Score =  177 bits (448), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 110/303 (36%), Positives = 165/303 (54%), Gaps = 12/303 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           HV VLL + I  LN     + +D T G  G+S       S    +I +D+D  A+   +E
Sbjct: 5   HVSVLLNECIEALNIKENGIYVDGTLGGAGHSSHILSNLSKDGMLIGIDQDQDALKAAKE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++D+ E      + F  +   + D   + VDG++ DLGVSS Q+D   RGFS+ K  PL
Sbjct: 65  KLKDF-ENVKYVHSNFYNIDSILNDLDIEKVDGILMDLGVSSYQLDEASRGFSYMKDAPL 123

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  +  SA ++VN  +   L +I+   GEE+ A RIA+ I+ RR   P +TT +L 
Sbjct: 124 DMRMNRENDFSAYNIVNNYDEDSLYKIIKDYGEERFAKRIANFIINRRIEKPIETTFELV 183

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  +    +    HPA R+FQA+RI VN+E++ L + +      L  GG + +++FH
Sbjct: 184 DIIKAAIPAKMRREGPHPAKRTFQAIRIEVNSELKILNKTIEDGVNRLNKGGRMAIITFH 243

Query: 252 SLEDRLVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK  F          +   M      P V ++I KK + PT+E++  N RSRSA
Sbjct: 244 SLEDRIVKLKFRELENPCTCPKEFPMCICGKSPLV-KNIAKKGIAPTKEEIEENPRSRSA 302

Query: 310 KLR 312
           KLR
Sbjct: 303 KLR 305


>gi|313837465|gb|EFS75179.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL037PA2]
 gi|314971672|gb|EFT15770.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL037PA3]
          Length = 337

 Score =  177 bits (448), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 111/304 (36%), Positives = 169/304 (55%), Gaps = 11/304 (3%)

Query: 20  HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCG 74
           HVPV+  +++ LL P   +  +V +D T G GG++ +      +V  + +DRD  A++  
Sbjct: 14  HVPVMRARILDLLGPTLESGRRVHVDGTLGMGGHAEAVLTRFPDVQLVGIDRDRQALTMA 73

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
              ++ + ++  L  A   +L + + D G   VD V+ DLG+SS+QID  +RGFS+    
Sbjct: 74  GARLKPFVDRVHLVHAVHDELPEVLDDLGLGRVDSVLLDLGLSSLQIDEVNRGFSYSVDS 133

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  S G +A+ V+N+++  DL RIL   GEEK A RI  AIV  R   P +T+  
Sbjct: 134 PLDMRMDQSRGRTAAQVLNESDPGDLVRILHEYGEEKFADRIVRAIVTERDRQPIETSGR 193

Query: 191 LSSLIQKTVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L  +I + +  +  ++   HPA R+FQALRI VN E+E L+  L  A   L  GG + V+
Sbjct: 194 LVEIITRAIPVAVRHKRSGHPAKRTFQALRIAVNREMETLSAVLPRALDRLNVGGRIAVL 253

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           ++HSLEDR VK+ F             I   +  A F  +T+    P  ++++ N RS S
Sbjct: 254 AYHSLEDRPVKEVFREACDDTAPAGLPIVPESMAAKFSPVTRGAERPDADEMSANPRSAS 313

Query: 309 AKLR 312
           A+LR
Sbjct: 314 ARLR 317


>gi|306832860|ref|ZP_07465994.1| S-adenosyl-methyltransferase MraW [Streptococcus bovis ATCC 700338]
 gi|304424999|gb|EFM28131.1| S-adenosyl-methyltransferase MraW [Streptococcus bovis ATCC 700338]
          Length = 338

 Score =  177 bits (448), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 115/323 (35%), Positives = 179/323 (55%), Gaps = 19/323 (5%)

Query: 6   CKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMG--SNVI 62
            K M++  HH     + VLL + + +L+  P  + +DAT G  G+S     K+G   ++ 
Sbjct: 20  MKGMTTDFHH-----ITVLLHETVDMLDIKPDGIYVDATLGGAGHSEYLLSKLGPTGHLY 74

Query: 63  ALDRDPFAVSCGQETMRDYKE--QFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQ 117
           A D+D  A+   Q  ++DY E  Q +  +  F  L   +   GV   DG+++DLGVSS Q
Sbjct: 75  AFDQDQTAIDNAQIRLKDYIEKGQVTFIKDNFRNLVSNLAMHGVTEIDGILYDLGVSSPQ 134

Query: 118 IDCGDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
           +D  +RGFS++K   LDMRM+    +SA DVVN  +  DL RI    GE+K + +IA  I
Sbjct: 135 LDERERGFSYKKDASLDMRMNRDQDLSAYDVVNTYDYHDLVRIFFKYGEDKFSKQIARKI 194

Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRS 234
            + R   P +TT +L+ +I K+   +K    + HPA + FQA+RI VN+E+    + ++ 
Sbjct: 195 EQARTVKPIETTTELAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQ 253

Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVV 293
           A + L   G + V++FHSLEDRL K+ F   S   V      IP +  P +   + +K +
Sbjct: 254 AIELLAVDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPEDMQPKL-TLVNRKPI 312

Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316
           +P++E++  N RS SAKLR   +
Sbjct: 313 LPSEEELEVNNRSHSAKLRVARK 335


>gi|229019122|ref|ZP_04175956.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus AH1273]
 gi|229025365|ref|ZP_04181783.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus AH1272]
 gi|228735950|gb|EEL86527.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus AH1272]
 gi|228742138|gb|EEL92304.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus AH1273]
          Length = 302

 Score =  177 bits (448), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 108/298 (36%), Positives = 167/298 (56%), Gaps = 11/298 (3%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDY 81
           +++ +  L+  P    +D T G GG+S         G  +IA D+D  A+   +E    Y
Sbjct: 1   MKETVDGLDIKPSGTYVDCTLGGGGHSSYLLSQLTDGGKLIAFDQDEIAIQNAKEKFSSY 60

Query: 82  KEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138
            EQF   ++ F  L + + + G   VDG++FDLGVSS Q+D  +RGFS+    PLDMRM 
Sbjct: 61  GEQFVTVKSNFRYLSEKLHELGITEVDGILFDLGVSSPQLDTPERGFSYHHDAPLDMRMD 120

Query: 139 CSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK 197
               ++A DVVN  + + L RI    GEEK + +I   I   R++   +TT +L  LI++
Sbjct: 121 QDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIVRKIEAYRENKAIETTGELVELIKE 180

Query: 198 TVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
            +   ++    HPA R FQA+RI VN+E++   + L SA   +K GG + V++FHSLEDR
Sbjct: 181 GIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIDMVKPGGRVSVITFHSLEDR 240

Query: 257 LVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           + K  F   S + ++     +IP    P + + IT+K ++P+  ++  N R+RSAKLR
Sbjct: 241 ICKTTFKRNSTTPQLPPGLPIIPDEFKPKL-KLITRKPILPSDIELEENNRARSAKLR 297


>gi|221202506|ref|ZP_03575536.1| S-adenosyl-methyltransferase MraW [Burkholderia multivorans CGD2M]
 gi|221208172|ref|ZP_03581177.1| S-adenosyl-methyltransferase MraW [Burkholderia multivorans CGD2]
 gi|221172075|gb|EEE04517.1| S-adenosyl-methyltransferase MraW [Burkholderia multivorans CGD2]
 gi|221177601|gb|EEE10018.1| S-adenosyl-methyltransferase MraW [Burkholderia multivorans CGD2M]
          Length = 313

 Score =  177 bits (448), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 116/312 (37%), Positives = 183/312 (58%), Gaps = 21/312 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMG--SNVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  + +D TFG GG+SR+   ++G    +IA D+DP A+   Q 
Sbjct: 7   HRTVLLDEAVESLVTRPDGIYVDGTFGRGGHSRAVLARLGPAGRLIAFDKDPRAIETAQ- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            M D +  FS+   +F+ ++  +  +G++   GV+ DLGVSS Q+D   RGFSF+  GPL
Sbjct: 66  AMADAR--FSIVHDSFASMRGALAARGIEKVSGVLLDLGVSSPQVDDPARGFSFRADGPL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTT 188
           DMRM  + G SA++ + +A++++LT ++   GEE+ A +IA A+V RR  +    P  +T
Sbjct: 124 DMRMDPTRGESAAEWLARASLQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDST 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ ++   V   +  +  PATR+FQA+RI VN E+ +L   L +A   L+ GG L+V+
Sbjct: 184 GELAQIVGHVVKTREKGK-DPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVI 242

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNRR 305
           SFHSLEDR+VK+F  + +    AV   +P  A      S   K++    P++ +V  N R
Sbjct: 243 SFHSLEDRIVKRFMQAHA-SAPAVDRRLPIRA--VDLPSPPLKIIGRQFPSEAEVVANPR 299

Query: 306 SRSAKLRAGMRT 317
           +RSA +R   R 
Sbjct: 300 ARSAVMRIAERV 311


>gi|159902730|ref|YP_001550074.1| S-adenosylmethionine-dependent methyltransferase [Prochlorococcus
           marinus str. MIT 9211]
 gi|226709923|sp|A9BD32|RSMH_PROM4 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|159887906|gb|ABX08120.1| Predicted S-adenosylmethionine-dependent methyltransferase
           [Prochlorococcus marinus str. MIT 9211]
          Length = 305

 Score =  177 bits (448), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 115/312 (36%), Positives = 177/312 (56%), Gaps = 38/312 (12%)

Query: 19  DHVPVLLEKVIALLNPAPGKVI-----LDATFGAGGYSRSFCKM--GSNVIALDRDPFAV 71
           +H PVL  ++I ++   P  +I     +DAT G GG+S    +   G +VI LD+DP AV
Sbjct: 13  NHTPVLANELIEIIKKLPEDLIKNCLIIDATIGGGGHSSLVLETFPGISVIGLDQDPKAV 72

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +   E ++ + ++  +    FS   ++ P K V  V  DLGVSS Q+D G RGFSF+ +G
Sbjct: 73  AAASEHLKIFGDRAKIETTNFS---NFTPSKKVAMVFADLGVSSPQLDEGSRGFSFRLNG 129

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIA----HAIVKRRQSAPFQ 186
           PLDMRM+   G +A++++++ +  +L  ++   GEE+ + RIA    H + K+    P+ 
Sbjct: 130 PLDMRMNQIDGTNAAELIDRLSENELANLIFKYGEERFSRRIAKRIKHDLAKQ---GPYS 186

Query: 187 TTQDLSSLIQKTVYFSK--NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
            T  L+  I    Y  K  N R+HPAT++FQALRI +N+E++ L+  L+ A + L   GL
Sbjct: 187 GTIALAYAIA-GCYPPKLRNRRVHPATKTFQALRIAINHELDVLSVLLKKAPEWLLDDGL 245

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
             V+SFHSLEDRLVKK F + +                   + IT+K ++ T  +++ N 
Sbjct: 246 FAVISFHSLEDRLVKKSFLTDTR-----------------LERITRKPLIATTNEISINP 288

Query: 305 RSRSAKLRAGMR 316
           RSRSAK+R   R
Sbjct: 289 RSRSAKMRVARR 300


>gi|332686267|ref|YP_004456041.1| rRNA small subunit methyltransferase H [Melissococcus plutonius
           ATCC 35311]
 gi|332370276|dbj|BAK21232.1| rRNA small subunit methyltransferase H [Melissococcus plutonius
           ATCC 35311]
          Length = 316

 Score =  177 bits (448), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 109/312 (34%), Positives = 175/312 (56%), Gaps = 13/312 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
           +H  VLL++ I  LN  P  + +D T G GG+S+      S   ++   D+D  A++   
Sbjct: 6   NHQTVLLKETINELNINPNGIYVDCTLGGGGHSQYLLSKLSEKGHLYVFDQDEMALTAAS 65

Query: 76  ETMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130
           + +  Y  K+  +  +A F  L++ + +K V   DG+ +DLGVSS Q+D  +RGFS+   
Sbjct: 66  KRLAPYVEKQMVTFIKANFRLLKEKLFEKHVFQVDGIFYDLGVSSPQLDEAERGFSYHHD 125

Query: 131 GPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM   S ++A ++VN  + ++L ++     EEK + +IA  I + R +   QTT 
Sbjct: 126 APLDMRMDQTSSLTAYEIVNHYSYENLVKVFFRYSEEKFSKQIAREIERVRLNQTIQTTG 185

Query: 190 DLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I+K +   ++    HPA R FQA+RI VN+E+  +   L  A + L   G + V+
Sbjct: 186 ELVEIIKKVIPAPARRTGGHPAKRIFQAIRIAVNDELGAIEVSLEQAIELLNKNGRIGVI 245

Query: 249 SFHSLEDRLVKKFFASRS--GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           +FHSLEDR+VK  F S S    +     ++P    P + + ITKK ++P++E+   N RS
Sbjct: 246 TFHSLEDRIVKNMFKSYSTPKDLPPGLPVVPEEYQP-ILKVITKKPIIPSEEEQKQNNRS 304

Query: 307 RSAKLRAGMRTV 318
           RSAKLR   + +
Sbjct: 305 RSAKLRIAEKII 316


>gi|295092968|emb|CBK82059.1| S-adenosyl-methyltransferase MraW [Coprococcus sp. ART55/1]
          Length = 311

 Score =  177 bits (448), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 101/302 (33%), Positives = 173/302 (57%), Gaps = 9/302 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VLLE+ I  LN  P  + +D T G  G+S    K    G  +I +D+D  A++   +
Sbjct: 5   HKSVLLEETIDNLNIKPDGIYVDGTLGGAGHSEQIVKRLGEGGRLIGIDQDEDAIAAASK 64

Query: 77  TMRDYKEQFSLFQ---ATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  Y ++ ++ +     F ++ D +  + VDG++ DLGVSS Q+D  DRGF+++   PL
Sbjct: 65  RLEPYGDKVTIVRDNYQNFRRILDELNIQKVDGILLDLGVSSYQLDNADRGFTYRVDAPL 124

Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM      +A D+VN  +  +L RIL   GEE+ A  IA+ I K R++   +TT++L+
Sbjct: 125 DMRMDNRQTKTAKDIVNDYSEAELFRILKDYGEERYAKSIAYHICKYRENKVIETTEELN 184

Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+ ++   ++N + HP+ ++FQA+RI +N E++ L   +     +L  GG L +++FH
Sbjct: 185 DIIRGSIPAKARNGQGHPSKQTFQAIRIELNRELDVLRDSIDGMIASLNPGGRLCIITFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK  F       +   +  + +     + + IT+K ++P + ++  N RS+S+K
Sbjct: 245 SLEDRIVKLAFRKNENPCICPPNFPVCTCGRKPLGKVITRKPIIPGERELEENSRSKSSK 304

Query: 311 LR 312
           LR
Sbjct: 305 LR 306


>gi|307708181|ref|ZP_07644648.1| S-adenosyl-methyltransferase MraW [Streptococcus mitis NCTC 12261]
 gi|307615627|gb|EFN94833.1| S-adenosyl-methyltransferase MraW [Streptococcus mitis NCTC 12261]
          Length = 316

 Score =  177 bits (448), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 111/309 (35%), Positives = 176/309 (56%), Gaps = 14/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           HV VLL + I +L+  P  + +DAT G  G+S       S   ++ A D+D  A+   Q+
Sbjct: 7   HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66

Query: 77  TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y E+   +  +  F  LQ  + + GV   DG+ +DLGVSS Q+D  +RGFS++K  
Sbjct: 67  RLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+  + ++A +VVN  +  DL RI    GE+K + +IA  I + R+  P +TT +
Sbjct: 127 PLDMRMNQEASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186

Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L+ +I K+   +K    + HPA + FQA+RI VN+E+    + ++ A   L   G + V+
Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVI 245

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F   S  +V      IP +  P + + +++K ++P+ E++  N RS 
Sbjct: 246 TFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKM-ELVSRKPILPSAEELEANNRSH 304

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 305 SAKLRVARK 313


>gi|301510055|ref|ZP_07235292.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii AB058]
          Length = 307

 Score =  177 bits (448), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 122/311 (39%), Positives = 175/311 (56%), Gaps = 26/311 (8%)

Query: 20  HVPVLL-EKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDP----FAV 71
           H+ VLL E V +LL      V +DATFG GG++R    K+  N  V A D+DP     A 
Sbjct: 3   HISVLLFETVESLLADRTIGVYIDATFGRGGHTRLLLSKLDENARVYAFDKDPQALEVAA 62

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQ 128
           +  QE  R     F++  A+F+ +++ + + GV   DG++ DLGVSS Q+D  +RGFSF 
Sbjct: 63  ALAQEDPR-----FTIIHASFADIKEKMQEIGVQSVDGIMADLGVSSPQLDQAERGFSFM 117

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           + GPLDMRM  S G++A++ + +   +DL  I+   GEE+ + RIA AI   +Q+    T
Sbjct: 118 QDGPLDMRMDNSKGLTAAEWLLEVEEEDLANIIYQYGEERYSRRIARAI---KQAGKLDT 174

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T  L+ ++ KT +       HPATR+FQA+RI +N E++++   L  A   LK  G L V
Sbjct: 175 TAQLAEIV-KTAHPKWEKHKHPATRTFQAIRIAINKELDDIEVFLPQAVDLLKPKGRLSV 233

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV--VVPTQEDVAFNRR 305
           +SFHSLEDRL+K+F    S         +P      V     KK+  V  ++E+V  N R
Sbjct: 234 ISFHSLEDRLIKQFIQKESTLAEDSGWGMPQQ---QVDTRRLKKISRVRASEEEVKANPR 290

Query: 306 SRSAKLRAGMR 316
           SRSA LR   R
Sbjct: 291 SRSAWLRVAER 301


>gi|307126547|ref|YP_003878578.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae 670-6B]
 gi|306483609|gb|ADM90478.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae 670-6B]
          Length = 316

 Score =  177 bits (448), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 111/309 (35%), Positives = 177/309 (57%), Gaps = 14/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           HV VLL + I +L+  P  + +DAT G  G+S       S   ++ A D+D  A+   Q+
Sbjct: 7   HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66

Query: 77  TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y E+   +  +  F  LQ  + + GV   DG+ +DLGVSS Q+D  +RGFS++K  
Sbjct: 67  RLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+  + ++A +VVN  +  DL RI    GE+K + +IA  I + R+  P +TT +
Sbjct: 127 PLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQVREVKPIETTTE 186

Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L+ +I K+   +K    + HPA + FQA+RI VN+E+    + ++ A + L   G + V+
Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMEMLALDGRISVI 245

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F   S  +V      IP +  P + + +++K ++P+ E++  N RS 
Sbjct: 246 TFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKM-ELVSRKPILPSAEELEANNRSH 304

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 305 SAKLRVARK 313


>gi|194335059|ref|YP_002016919.1| S-adenosyl-methyltransferase MraW [Prosthecochloris aestuarii DSM
           271]
 gi|262824884|sp|B4S6R7|RSMH_PROA2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|194312877|gb|ACF47272.1| S-adenosyl-methyltransferase MraW [Prosthecochloris aestuarii DSM
           271]
          Length = 333

 Score =  177 bits (448), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 118/318 (37%), Positives = 180/318 (56%), Gaps = 29/318 (9%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYS--------RSFCKMGSNVIALDRDPF 69
           G H+PV++ +V  LL   PG + +D T G GG++        RS  +  S +I +D+D F
Sbjct: 5   GYHLPVMVSEVTDLLARRPG-IYIDGTLGGGGHAFSVMSALRRSGFENDSLLIGIDQDSF 63

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KG----VDGVVFDLGVSSMQIDCG 121
           A+      +R +  +  L +  FS++   +      +G    V G++ DLGVSS QID  
Sbjct: 64  ALEEAAGRLRPFASRVRLERGNFSEMAAIIERIRLREGCRLPVMGILLDLGVSSFQIDTP 123

Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR- 179
           DRGFS+ + GPLDMRM    G SA+D+VN A   +L  I+   GEEK++  IA AI  R 
Sbjct: 124 DRGFSYLRQGPLDMRMDPDGGWSAADIVNTAEESELAGIIYRYGEEKKSRAIARAIKARV 183

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
           R+   F+ T +L++++ ++V    + +I   +R FQALRI VN+E+  L   L      L
Sbjct: 184 REKGDFRETAELAAVV-RSVVAGHDRQIKSLSRVFQALRIAVNDELGVLESALEDGTACL 242

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSG-----KVMAVRHMIPSNAHPAVFQSITKKVVV 294
              G + V+S+HSLEDR+VK+FF  +S      K + +R  + S    A F+ +T+K VV
Sbjct: 243 APSGRMGVMSYHSLEDRMVKRFFRDKSEDDWGPKGVGLREPLRS----AGFKLVTRKSVV 298

Query: 295 PTQEDVAFNRRSRSAKLR 312
            + ++V  N R+RSA+LR
Sbjct: 299 ASDDEVRINPRARSARLR 316


>gi|319938119|ref|ZP_08012517.1| S-adenosyl-methyltransferase mraW [Coprobacillus sp. 29_1]
 gi|319806640|gb|EFW03289.1| S-adenosyl-methyltransferase mraW [Coprobacillus sp. 29_1]
          Length = 315

 Score =  177 bits (448), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 107/310 (34%), Positives = 169/310 (54%), Gaps = 10/310 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQE 76
           +H+ VLLE+ I  LN     + +D T G GG+S+   K     ++   D+D  A+    +
Sbjct: 3   NHISVLLEETIEGLNIKEDGIYVDCTLGGGGHSQEILKRLTTGHLYCFDQDQVAIEVAAK 62

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +    + F++  + F  ++  +   GV   DG+VFDLGVSS Q D G+RGFS+     L
Sbjct: 63  RLSQISDHFTIIYSNFKNMKSELNQLGVQKVDGIVFDLGVSSPQFDDGERGFSYNYDAKL 122

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     +SA ++VN     +L +I     +EK + +IA AI + RQ  P +TT +L 
Sbjct: 123 DMRMDRNQTLSAYEIVNTYEFNELVKIFYKYADEKFSKQIARAIERHRQEKPIETTFELV 182

Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I++ +   ++    HPA R+FQALRI VN+E+    + L  +   +  GG + V++FH
Sbjct: 183 EIIKEAIPAPARRKGGHPAKRTFQALRIAVNDELSVFEKALDDSLDCICVGGRIAVITFH 242

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLED++ K  F   ++  ++     ++P    P  FQ ITKK +V  ++++  N RS SA
Sbjct: 243 SLEDKICKYTFNEVTKQPQLPMGMPIVPEYLKPR-FQKITKKPIVAGEKELEENHRSHSA 301

Query: 310 KLRAGMRTVE 319
           KLR   R  E
Sbjct: 302 KLRIIERVYE 311


>gi|240116316|ref|ZP_04730378.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae PID18]
 gi|240118603|ref|ZP_04732665.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae PID1]
 gi|240128816|ref|ZP_04741477.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 306

 Score =  176 bits (447), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 112/292 (38%), Positives = 166/292 (56%), Gaps = 20/292 (6%)

Query: 39  VILDATFGAGGYSR-SFCKMG--SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95
           V +D TFG GG+SR    ++G    +I  D+DP A++  +E  R  K +  +    F+  
Sbjct: 16  VYVDGTFGRGGHSRLILSRLGDAGRLIVFDKDPQAIAVAEELARSDK-RVGVVHGGFASF 74

Query: 96  QDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQA 151
           Q  +   G   VDG +FDLG+SS QID G RGFSF+   PLDMRM  + G+SA++ +  A
Sbjct: 75  QTALDGLGIGKVDGALFDLGISSPQIDDGSRGFSFRFDAPLDMRMDTTRGMSAAEWIAVA 134

Query: 152 NVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPAT 211
           + +DL  ++   GEE+ + +I  AIV +R  +P  TT+ L+ ++ + V   +  +  PAT
Sbjct: 135 SEQDLHEVIKNYGEERFSRQIVRAIVAQRAESPIDTTRKLAQIVAQNVRTRERGQ-DPAT 193

Query: 212 RSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMA 271
           R+FQA+RIF+N E+EE+   L      LK GG L V++FHSLEDR+VK+F      K  +
Sbjct: 194 RTFQAIRIFINRELEEVGAVLPQVMCRLKEGGRLAVIAFHSLEDRIVKQFV-----KKYS 248

Query: 272 VRHMIPSNAH------PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
               +PS A       P     I  + + P + ++A N R+RSA LR   RT
Sbjct: 249 QHEPLPSWAAVREADLPDPPLKIVGRALKPGEAEIAANPRARSAVLRVAERT 300


>gi|300361452|ref|ZP_07057629.1| S-adenosyl-methyltransferase MraW [Lactobacillus gasseri JV-V03]
 gi|300354071|gb|EFJ69942.1| S-adenosyl-methyltransferase MraW [Lactobacillus gasseri JV-V03]
          Length = 315

 Score =  176 bits (447), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 112/311 (36%), Positives = 179/311 (57%), Gaps = 15/311 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMG-SNVIALDRDPFAVSCGQET 77
           H  VLL + I  LNP    + +DATFG GG++R    K+    VI  D+D +A+S  +E+
Sbjct: 5   HKSVLLHETIDNLNPKDDGLYVDATFGGGGHARYLLSKLNRGTVIGFDQDEYAISMAKES 64

Query: 78  MRDY-----KEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             +      + +  L    F  L+  + +     G+DG+ +DLGVSS Q D  +RGFS++
Sbjct: 65  FAEELKPGAEPKLILVHDNFCHLKKNLVELGISDGIDGIYYDLGVSSPQFDQPERGFSYR 124

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
               LDMRM  S  + A  +VN  + K+L+ IL   G+EK + +IA  IV RR+  P  T
Sbjct: 125 FDARLDMRMDQSQELDAYTIVNTWSQKELSDILYKYGDEKFSRQIARKIVDRRREKPIVT 184

Query: 188 TQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T DL  +I+  +  +++ +  HPA +SFQA+R+ VNNE+  L + L  A K L+ GG + 
Sbjct: 185 TFDLVDVIKDAIPAYARRSGGHPAKKSFQAIRVAVNNELGVLQESLEEAIKLLRPGGRIS 244

Query: 247 VVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           V++F S ED++VKK F   S  ++     M+P+++ P + + I++K ++ + +++  N R
Sbjct: 245 VITFQSHEDKIVKKIFKKYSEVEIPRGMPMVPADSKPTL-RLISRKPIMASSDELEENNR 303

Query: 306 SRSAKLRAGMR 316
           S SAKLR   +
Sbjct: 304 SHSAKLRVAEK 314


>gi|53726017|ref|YP_104102.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei ATCC 23344]
 gi|67643637|ref|ZP_00442382.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei GB8 horse 4]
 gi|121598510|ref|YP_991829.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei SAVP1]
 gi|124386348|ref|YP_001027322.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei NCTC 10229]
 gi|126438415|ref|YP_001060543.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 668]
 gi|126449153|ref|YP_001082741.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei NCTC 10247]
 gi|162210064|ref|YP_334923.2| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 1710b]
 gi|166998645|ref|ZP_02264503.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei PRL-20]
 gi|167721351|ref|ZP_02404587.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei DM98]
 gi|254179030|ref|ZP_04885684.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei ATCC 10399]
 gi|254202823|ref|ZP_04909186.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei FMH]
 gi|254208165|ref|ZP_04914515.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei JHU]
 gi|254259496|ref|ZP_04950550.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 1710a]
 gi|254357631|ref|ZP_04973905.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei 2002721280]
 gi|88909189|sp|Q3JND0|RSMH_BURP1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|115311581|sp|Q62GR9|RSMH_BURMA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446914|sp|A3MR55|RSMH_BURM7 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446917|sp|A2S5V3|RSMH_BURM9 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446920|sp|A1V0S6|RSMH_BURMS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446928|sp|A3NDX2|RSMH_BURP6 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|52429440|gb|AAU50033.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei ATCC 23344]
 gi|121227320|gb|ABM49838.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei SAVP1]
 gi|124294368|gb|ABN03637.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei NCTC 10229]
 gi|126217908|gb|ABN81414.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 668]
 gi|126242023|gb|ABO05116.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei NCTC 10247]
 gi|147747070|gb|EDK54147.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei FMH]
 gi|147752059|gb|EDK59126.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei JHU]
 gi|148026695|gb|EDK84780.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei 2002721280]
 gi|160694944|gb|EDP84952.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei ATCC 10399]
 gi|238525016|gb|EEP88446.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei GB8 horse 4]
 gi|243065324|gb|EES47510.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei PRL-20]
 gi|254218185|gb|EET07569.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 1710a]
          Length = 313

 Score =  176 bits (447), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 119/312 (38%), Positives = 182/312 (58%), Gaps = 21/312 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMG--SNVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  V +D TFG GG+SR+   ++G    +IA D+DP A+    E
Sbjct: 7   HRTVLLDEAVDALVTRPDGVYVDGTFGRGGHSRAVLARLGDAGRLIAFDKDPRAIETA-E 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           ++ D +  F +   +F+ ++  +  +GV    GV+ DLGVSS Q+D   RGFSF+ +GPL
Sbjct: 66  SIEDAR--FEIVHDSFAAMKGALDARGVGRVSGVLLDLGVSSPQVDDPARGFSFRANGPL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTT 188
           DMRM  + G SA++ + +A+V++LT ++   GEE+ A +IA AIV RR  +    P  +T
Sbjct: 124 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRLGPLDST 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ ++   V   +  +  PATR+FQA+RI VN E+ +L   L +A   L+ GG L+V+
Sbjct: 184 GELAQIVGHVVKTREKGK-DPATRTFQAIRIHVNQELADLQVVLEAALSLLEQGGRLVVI 242

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNRR 305
           SFHSLEDR+VK+F  + +    AV   +P  A  A       K++    P   +VA N R
Sbjct: 243 SFHSLEDRIVKRFLQAHA-SAPAVDRRLPIRA--ADLPRPPLKLLGRMFPNDAEVAANPR 299

Query: 306 SRSAKLRAGMRT 317
           +RSA +R   R 
Sbjct: 300 ARSAVMRIAERV 311


>gi|281421043|ref|ZP_06252042.1| S-adenosyl-methyltransferase MraW [Prevotella copri DSM 18205]
 gi|281404961|gb|EFB35641.1| S-adenosyl-methyltransferase MraW [Prevotella copri DSM 18205]
          Length = 304

 Score =  176 bits (447), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 115/300 (38%), Positives = 168/300 (56%), Gaps = 16/300 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76
           HVPVLL++ +  LN  PG + +D TFG GG+SR   S    G+++ + D+D  A     E
Sbjct: 9   HVPVLLKESVDGLNIQPGGIYVDVTFGGGGHSREILSRLTEGAHLYSFDQDADA-----E 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQKSGPL 133
                 E F+   + F  L++++   GVDG+   + DLGVSS   D   RGFSF+   PL
Sbjct: 64  RNVVANENFTFVCSNFRFLKNWMRYYGVDGLDGLLADLGVSSHHFDDETRGFSFRFDSPL 123

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  +G +A+D+VN+ +   L  I  + GE K + RIA A+VK R   P  TT+D  
Sbjct: 124 DMRMNKRAGKTAADIVNEYDEGALADIFYLYGELKNSRRIASALVKARAEKPILTTKDFM 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           + ++    F +        + FQALRI VN+E++ L + LRSA   LK GG L V+++HS
Sbjct: 184 AAVEPL--FKREREKKDMAKLFQALRIEVNHEMDALKEMLRSATALLKPGGRLSVITYHS 241

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK    + + +    +        P  F+ +  KV+VP  ++   N RSRSAKLR
Sbjct: 242 LEDRIVKNMMKAGNAEGKIEQDFFGRIETP--FKLVNNKVIVPDADEQERNPRSRSAKLR 299


>gi|126695529|ref|YP_001090415.1| S-adenosylmethionine-dependent methyltransferase [Prochlorococcus
           marinus str. MIT 9301]
 gi|262824906|sp|A3PAN9|RSMH_PROM0 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|126542572|gb|ABO16814.1| Predicted S-adenosylmethionine-dependent methyltransferase
           [Prochlorococcus marinus str. MIT 9301]
          Length = 300

 Score =  176 bits (447), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 113/310 (36%), Positives = 174/310 (56%), Gaps = 42/310 (13%)

Query: 19  DHVPVLLEKVIALLNPAPGKVI-------LDATFGAGGYSRSFCKMGS--NVIALDRDPF 69
           +H  V+ ++++A L   P  +I       +DAT G GG+S    +  S  N+I LD+DPF
Sbjct: 12  NHKSVMTDEIMASLEHYP--LIHNNQLKGIDATLGGGGHSYHLLRKYSDLNIIGLDQDPF 69

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
           A     + + ++K +  +  + F+   D+VP + V  V+ DLGV+S Q+D   RGFSFQK
Sbjct: 70  ARKSALKKLDEFKSRIDIRASNFA---DFVPKEKVSFVIADLGVNSNQLDDPKRGFSFQK 126

Query: 130 SGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI-VKRRQSAPFQT 187
            GPLDMRM+    + A  ++   N KDL  ++   G+E+ + +IA  I +  +++  +  
Sbjct: 127 DGPLDMRMNPLLDVDAEKLIEVLNEKDLANLIYKYGDERLSRKIARKIKLDLKENGKYSG 186

Query: 188 TQDLSSLIQ-----KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           T++L+  I      K  Y     +IHPATR+FQALRI VN EIE L + L+   + L  G
Sbjct: 187 TKELAYSIAGCFPPKQRY----KKIHPATRTFQALRIAVNKEIEVLEKFLQVVPEWLLPG 242

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G++ V+SFHSLEDRLVK  F +                     +++TKK + P++E+V  
Sbjct: 243 GIISVISFHSLEDRLVKSCFKNDQR-----------------LKNLTKKPITPSEEEVEL 285

Query: 303 NRRSRSAKLR 312
           N+R+RS KLR
Sbjct: 286 NKRARSGKLR 295


>gi|317402444|gb|EFV83013.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Achromobacter xylosoxidans C54]
          Length = 365

 Score =  176 bits (447), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 123/330 (37%), Positives = 180/330 (54%), Gaps = 35/330 (10%)

Query: 19  DHVPVLLEKVI-ALL----------------NPAPGK-----VILDATFGAGGYSRSFC- 55
           +H PVLLE  + ALL                 PA        V +D TFG GG+SR    
Sbjct: 4   EHRPVLLEPTVDALLLADFGGKGAARSQPGDEPAAATRAERGVFVDGTFGRGGHSRELLG 63

Query: 56  KMG--SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFD 110
           ++G  + ++  D+DP         +     + ++    F+ + + +   G   VDGV+ D
Sbjct: 64  RLGPTARLVVFDKDP-EAIAVANALAAADSRVTVVHGGFATMAEELRQLGIDKVDGVMLD 122

Query: 111 LGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQA 169
           LGVSS QID  +RGFSF + GPLDMRM  + G + +D + QA+V ++  ++   GEE+ A
Sbjct: 123 LGVSSPQIDDAERGFSFMRDGPLDMRMDTTRGPTVADWLAQASVDEMREVIADYGEERFA 182

Query: 170 SRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELA 229
            ++A AI  RR + P +TT +L+  +   V   +  + HPATR+FQALRI++N E+EELA
Sbjct: 183 FQVAKAIAARRATRPLRTTLELAECVASAVRTREKGQ-HPATRTFQALRIYINRELEELA 241

Query: 230 QGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQS 287
           + L SA   L  GG L V+SFHSLEDR+VK+  A+ +    A   +    S     V +S
Sbjct: 242 RTLASALDLLAPGGRLAVISFHSLEDRMVKQCIAAAARPAAAHARLPLRESEMPQPVLRS 301

Query: 288 ITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           + +  V+   E+VA N R+RSA LR   RT
Sbjct: 302 LGR--VLAEDEEVAANARARSAVLRVAERT 329


>gi|306830125|ref|ZP_07463309.1| S-adenosyl-methyltransferase MraW [Streptococcus mitis ATCC 6249]
 gi|304427651|gb|EFM30747.1| S-adenosyl-methyltransferase MraW [Streptococcus mitis ATCC 6249]
          Length = 316

 Score =  176 bits (447), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 111/309 (35%), Positives = 176/309 (56%), Gaps = 14/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           HV VLL + I +L+  P  + +DAT G  G+S       S   ++ A D+D  A+   Q+
Sbjct: 7   HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66

Query: 77  TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y E+   +  +  F  LQ  + + GV   DG+ +DLGVSS Q+D  +RGFS++K  
Sbjct: 67  RLAPYIEKGMVTFIKDNFRHLQARLLEAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+  + ++A +VVN  +  DL RI    GE+K + +IA  I + R+  P +TT +
Sbjct: 127 PLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186

Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L+ +I K+   +K    + HPA + FQA+RI VN+E+    + ++ A   L   G + V+
Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVI 245

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F   S  +V      IP +  P + + +++K ++P+ E++  N RS 
Sbjct: 246 TFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKM-ELVSRKPILPSAEELEANNRSH 304

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 305 SAKLRVARK 313


>gi|301793586|emb|CBW35963.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae INV104]
 gi|332204336|gb|EGJ18401.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           GA47901]
          Length = 316

 Score =  176 bits (447), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 112/309 (36%), Positives = 175/309 (56%), Gaps = 14/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           HV VLL + I +L+  P  + +DAT G  G+S       S   ++ A D+D  A+   Q+
Sbjct: 7   HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66

Query: 77  TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y E+   +  +  F  LQ  + + GV   DG+ +DLGVSS Q+D  +RGFS++K  
Sbjct: 67  RLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+  + ++A +VVN  +  DL RI    GE+K + +IA  I + R+  P +TT +
Sbjct: 127 PLDMRMNQDASLTAYEVVNNYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186

Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L+ +I K V  +K    + HPA + FQA+RI VN+E+    + +  A   L   G + V+
Sbjct: 187 LAEII-KLVKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIHQAMDMLALDGRISVI 245

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F   S  +V      IP +  P + + +++K ++P+ E++  N RS 
Sbjct: 246 TFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKM-ELVSRKPILPSAEELEANNRSH 304

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 305 SAKLRVARK 313


>gi|15900265|ref|NP_344869.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae TIGR4]
 gi|111657194|ref|ZP_01407969.1| hypothetical protein SpneT_02001591 [Streptococcus pneumoniae
           TIGR4]
 gi|262827209|sp|P0CB58|RSMH_STRPN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|14971807|gb|AAK74509.1| yllC protein [Streptococcus pneumoniae TIGR4]
          Length = 316

 Score =  176 bits (447), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 112/305 (36%), Positives = 175/305 (57%), Gaps = 14/305 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           HV VLL + I +L+  P  + +DAT G  G+S       S   ++ A D+D  A+   Q+
Sbjct: 7   HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66

Query: 77  TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y E+   +  +  F  LQ  + + GV   DG+ +DLGVSS Q+D  +RGFS++K  
Sbjct: 67  RLAPYIEKGMVTFIKDNFRHLQACLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+  + ++A +VVN  +  DL RI    GE+K + +IA  I + R+  P +TT +
Sbjct: 127 PLDMRMNQDASLTAYEVVNNYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186

Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L+ +I K V  +K    + HPA + FQA+RI VN+E+    + ++ A   L   G + V+
Sbjct: 187 LAEII-KLVKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVI 245

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F   S  +V      IP +  P + + +++K ++P+ E++  N RS 
Sbjct: 246 TFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKM-ELVSRKPILPSAEELEANNRSH 304

Query: 308 SAKLR 312
           SAKLR
Sbjct: 305 SAKLR 309


>gi|300933362|ref|ZP_07148618.1| S-adenosyl-methyltransferase MraW [Corynebacterium resistens DSM
           45100]
          Length = 348

 Score =  176 bits (447), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 110/326 (33%), Positives = 179/326 (54%), Gaps = 26/326 (7%)

Query: 20  HVPVLLEKVIALL------NPAPG-KVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70
           HVPV+ ++++ L+      + AP   VI+D T GAGG+S +F    S+  VI LDRDP A
Sbjct: 17  HVPVMCDRMVELVGVGVTSDNAPSVPVIIDGTLGAGGHSEAFLSSFSDAIVIGLDRDPHA 76

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPD-------------KGVDGVVFDLGVSSMQ 117
           +    E +  + ++F  ++  F  + + + D              G+  + FDLGVSSMQ
Sbjct: 77  LEEATERLAPFGDRFVPYRTRFDGITEAIEDLIALDRIPAEVRETGLSALFFDLGVSSMQ 136

Query: 118 IDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
           +D  +RGF+++   PLDMRM     ++A++++N  +  DL RIL   G+E+ A +IA A+
Sbjct: 137 LDQAERGFAYRVDAPLDMRMDPRLSLTAAEILNTYSHGDLARILKTYGDERFAGKIASAV 196

Query: 177 VKRRQSAPFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           ++ R+  PF T+  L  L+  T+   ++    HPA R+FQALRI VN E+E L   L  A
Sbjct: 197 LREREKEPFTTSARLVELLYATIPAATRRTGGHPAKRTFQALRIEVNAELEALENVLPLA 256

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFAS-RSGKVMAVRHMIPSNAHPAVFQSITKKVVV 294
                 GG+ + +S+ SLED++VK  F+   + +  A   M      P  F+ IT++   
Sbjct: 257 ASWTHVGGVNVYMSYQSLEDKIVKSAFSDLTTSQTPAGLPMELPGTEPE-FEMITRRAEK 315

Query: 295 PTQEDVAFNRRSRSAKLRAGMRTVER 320
            T++++  N R+   ++RA  R  +R
Sbjct: 316 ATEKEIEENSRAAPVRVRAARRVSDR 341


>gi|217425690|ref|ZP_03457180.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 576]
 gi|217391278|gb|EEC31310.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 576]
          Length = 313

 Score =  176 bits (447), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 119/312 (38%), Positives = 182/312 (58%), Gaps = 21/312 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMG--SNVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  V +D TFG GG+SR+   ++G    +IA D+DP A+    E
Sbjct: 7   HRTVLLDEAVDALVTRPDGVYVDGTFGRGGHSRAVLARLGDAGRLIAFDKDPRAIETA-E 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           ++ D +  F +   +F+ ++  +  +G   V GV+ DLGVSS Q+D   RGFSF+ +GPL
Sbjct: 66  SIEDAR--FEIVHDSFAAMKGALDARGIGRVSGVLLDLGVSSPQVDDPARGFSFRANGPL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTT 188
           DMRM  + G SA++ + +A+V++LT ++   GEE+ A +IA AIV RR  +    P  +T
Sbjct: 124 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRLGPLDST 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ ++   V   +  +  PATR+FQA+RI VN E+ +L   L +A   L+ GG L+V+
Sbjct: 184 GELAQIVGHVVKTREKGK-DPATRTFQAIRIHVNQELADLQVVLEAALSLLEQGGRLVVI 242

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNRR 305
           SFHSLEDR+VK+F  + +    AV   +P  A  A       K++    P   +VA N R
Sbjct: 243 SFHSLEDRIVKRFLQAHA-SAPAVDRRLPIRA--ADLPRPPLKLLGRMFPNDAEVAANPR 299

Query: 306 SRSAKLRAGMRT 317
           +RSA +R   R 
Sbjct: 300 ARSAVMRIAERV 311


>gi|152980341|ref|YP_001354713.1| S-adenosyl-methyltransferase MraW [Janthinobacterium sp. Marseille]
 gi|263456176|sp|A6T2G6|RSMH_JANMA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|151280418|gb|ABR88828.1| S-adenosyl-methyltransferase [Janthinobacterium sp. Marseille]
          Length = 322

 Score =  176 bits (447), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 113/308 (36%), Positives = 179/308 (58%), Gaps = 16/308 (5%)

Query: 20  HVPVLLEKVI---ALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73
           H  VLL++ +   AL       V +D TFG GG+SR   +    G+ ++A D+D  A++ 
Sbjct: 11  HRTVLLDEAVDALALGGERANGVYVDGTFGRGGHSRKILQQLGSGARLLAFDKDTQAIAN 70

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
              T+ D  ++F +   +F+ L + +  +G   VDGV+ DLG+SS Q+D   RGFSF+  
Sbjct: 71  AA-TIDD--QRFEIAHDSFATLSEALAVRGIKQVDGVLLDLGISSPQVDDATRGFSFRAD 127

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
           GPLDMRM  + G+SA++ +     + + +++   GEE+ A +IA AIV RR   P  +T+
Sbjct: 128 GPLDMRMDTTRGMSAAEWLATETEQKIEKVIREYGEERFAFQIAKAIVARRAVEPISSTR 187

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            L+ ++ +TV   +  +  PATR+FQA+RIF+N E+EEL   L  A + L   G L+V+S
Sbjct: 188 QLAEIVARTVKTREKGK-DPATRTFQAIRIFINQELEELEVVLNEAYRYLAPHGRLVVIS 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK+F A ++      R + I +   P     +  + V P+  +++ N R+RS
Sbjct: 247 FHSLEDRIVKQFMAGKANVPQPDRRLPIRAIDLPQPEMKLLSR-VKPSAAEISENPRARS 305

Query: 309 AKLRAGMR 316
           A +R   R
Sbjct: 306 AVMRVAER 313


>gi|288801599|ref|ZP_06407041.1| S-adenosyl-methyltransferase MraW [Prevotella melaninogenica D18]
 gi|288335641|gb|EFC74074.1| S-adenosyl-methyltransferase MraW [Prevotella melaninogenica D18]
          Length = 314

 Score =  176 bits (447), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 115/303 (37%), Positives = 174/303 (57%), Gaps = 15/303 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76
           H+PVLL + I  LN     V +D TFG GG+SR   S    GS++ + D+D  A     +
Sbjct: 9   HIPVLLNESIEGLNLHANGVYVDVTFGGGGHSREILSRLAEGSHLYSFDQDADA-EQNID 67

Query: 77  TMRDYKEQ---FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130
            M   +EQ   F+  ++ F  L++++   GV   DG++ DLGVSS   D   RGFSF+  
Sbjct: 68  NMGLSEEQVDRFTFVRSNFRYLKNWMQYYGVEYIDGLLADLGVSSHHFDDETRGFSFRFE 127

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM+  +GI+A+D++N  + + L  IL + GE KQ+ RIA AIVK R    ++TT 
Sbjct: 128 APLDMRMNKRAGITAADILNDYDEERLADILYLYGELKQSRRIASAIVKARGQKTYKTTN 187

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           DL + I+    +++  +     + FQALRI VN+E++ L + L +A + L+ GG L V++
Sbjct: 188 DLLTTIEPFFQWAREKK--DMAKMFQALRIEVNHEMDALKEMLMAATELLRPGGRLSVIT 245

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           +HSLEDR+VK    S + +    +        P  F+ +  KV+  + ++   N RSRSA
Sbjct: 246 YHSLEDRMVKNIMKSGNIEGKVKQDFFGRTETP--FRLVNNKVITASNDEQERNPRSRSA 303

Query: 310 KLR 312
           KLR
Sbjct: 304 KLR 306


>gi|53720643|ref|YP_109629.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei
           K96243]
 gi|167817538|ref|ZP_02449218.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 91]
 gi|115311582|sp|Q63QI9|RSMH_BURPS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|52211057|emb|CAH37045.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei
           K96243]
          Length = 313

 Score =  176 bits (447), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 119/312 (38%), Positives = 182/312 (58%), Gaps = 21/312 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMG--SNVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  V +D TFG GG+SR+   ++G    +IA D+DP A+    E
Sbjct: 7   HRTVLLDEAVDALVTRPDGVYVDGTFGRGGHSRAVLARLGYAGRLIAFDKDPRAIETA-E 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           ++ D +  F +   +F+ ++  +  +G   V GV+ DLGVSS Q+D   RGFSF+ +GPL
Sbjct: 66  SIEDAR--FEIVHDSFAAMKGALDARGIGRVSGVLLDLGVSSPQVDDPARGFSFRANGPL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTT 188
           DMRM  + G SA++ + +A+V++LT ++   GEE+ A +IA AIV RR  +    P  +T
Sbjct: 124 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRLGPLDST 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ ++   V   +  +  PATR+FQA+RI VN E+ +L   L +A   L+ GG L+V+
Sbjct: 184 GELAQIVGHVVKTREKGK-DPATRTFQAIRIHVNQELADLQVVLEAALSLLEQGGRLVVI 242

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNRR 305
           SFHSLEDR+VK+F  + +    AV   +P  A  A       K++    P   +VA N R
Sbjct: 243 SFHSLEDRIVKRFLQAHA-SAPAVDRRLPIRA--ADLPRPPLKLLGRMFPNDAEVAANPR 299

Query: 306 SRSAKLRAGMRT 317
           +RSA +R   R 
Sbjct: 300 ARSAVMRIAERV 311


>gi|50086346|ref|YP_047856.1| S-adenosyl-methyltransferase MraW [Acinetobacter sp. ADP1]
 gi|54036183|sp|Q6F7D1|RSMH_ACIAD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|49532322|emb|CAG70034.1| S-adenosylmethionine methyltransferase [Acinetobacter sp. ADP1]
          Length = 303

 Score =  176 bits (447), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 122/318 (38%), Positives = 177/318 (55%), Gaps = 36/318 (11%)

Query: 20  HVPVLL-EKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCG- 74
           H+ VLL E V ALL      + +D TFG GG++R    K+GS+  V   D+DP A++   
Sbjct: 3   HISVLLHETVDALLANRDTGIYIDGTFGRGGHTRLLLSKLGSDAQVYGFDKDPQALAVAH 62

Query: 75  ---QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQ 128
              QE +R     F +  A+F+ +Q  +  +G   V+GV+ DLGVSS Q+D  +RGFSF 
Sbjct: 63  QLEQEDLR-----FKIIHASFADIQTELEQRGITQVEGVMADLGVSSPQLDQAERGFSFM 117

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           + GPLDMRM  S G +A++ +     + L  I+   GEE+ + RIA AI   +Q+   +T
Sbjct: 118 QDGPLDMRMDNSQGKTAAEWLLSIEEEALANIIYQYGEERYSRRIARAI---KQAGALET 174

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T  L+ L+ KT +       HPATR+FQA+RI +N E+E++   L  A   LK  G L V
Sbjct: 175 TAQLAELV-KTAHPKWEKHKHPATRTFQAIRIAINKELEDIEIFLPQAVTLLKPEGRLAV 233

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT-----KKV--VVPTQEDV 300
           ++FHSLEDRL+K+F    S         +P ++   + Q        KK+  +  ++E+V
Sbjct: 234 ITFHSLEDRLIKQFIQKES--------TLPEDSGWGLPQKQVDSRRLKKISRIRASEEEV 285

Query: 301 AFNRRSRSAKLRAGMRTV 318
             N RSRSA LR   R V
Sbjct: 286 KANPRSRSAWLRVAERLV 303


>gi|315655245|ref|ZP_07908146.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Mobiluncus curtisii ATCC 51333]
 gi|315490500|gb|EFU80124.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Mobiluncus curtisii ATCC 51333]
          Length = 378

 Score =  176 bits (447), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 118/336 (35%), Positives = 182/336 (54%), Gaps = 36/336 (10%)

Query: 20  HVPVLLEKVIALLNPA--------------------PGKVILDATFGAGGYSRSFCKMGS 59
           H PVL E    LL PA                     G V++DAT G GG+S    +   
Sbjct: 8   HQPVLAEVCADLLAPALTPASESVNPLSSTADFHNVQGPVLVDATLGMGGHSAYLLERHP 67

Query: 60  N--VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVS 114
              +I +DRDP A       + D+  + S+   T+ +L D +   G   VDG++ DLGVS
Sbjct: 68  QLRIIGIDRDPQARDLAASRLSDFANRLSIVGTTYGELDDVLAQHGLRQVDGILADLGVS 127

Query: 115 SMQIDCGDRGFSF-QKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRI 172
           S+Q+D  +RGF++     PLDMRM+  SG +A+D +N A  +++  +L   GEEK +  +
Sbjct: 128 SLQLDEAERGFAYAHPEAPLDMRMNQSSGFTAADFLNLAQAEEIAAVLHTYGEEKFSWPL 187

Query: 173 AHAIVKRRQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQG 231
           A AIVK RQ+ P Q +  L  +I+ T+   ++    +PA R+FQALR+ VN+E+ +L + 
Sbjct: 188 AKAIVKARQNQPLQVSGQLVQIIRDTIPAPARRTGGNPAKRTFQALRVAVNDELGDLERF 247

Query: 232 LRSAEKALKAGGLLIVVSFHSLEDRLVKKFFAS----RSGKVMAVRHMIPSNAHPAVFQS 287
           L  A  +++ GG ++V S+ SLEDRLVK+ FA+     + K + V   +P  A P   + 
Sbjct: 248 LTKALASVRVGGRIVVESYQSLEDRLVKRAFAAGIHPAAPKGLPV---LPEQAQP-WLRD 303

Query: 288 ITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIE 323
           +T    +  + +VA N R+ S +LRA ++T E   E
Sbjct: 304 LTHGSRLADESEVAQNPRAASLRLRAVVKTREPHPE 339


>gi|330444381|ref|YP_004377367.1| S-adenosyl-methyltransferase MraW [Chlamydophila pecorum E58]
 gi|328807491|gb|AEB41664.1| S-adenosyl-methyltransferase MraW [Chlamydophila pecorum E58]
          Length = 296

 Score =  176 bits (447), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 112/300 (37%), Positives = 168/300 (56%), Gaps = 20/300 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI---ALDRDPFAVSCGQE 76
           H+PVL+ + ++L + +  +   D T GAGG++++F     ++    A DRDP A++   +
Sbjct: 5   HIPVLVHECLSLFSQSTPRKFCDVTVGAGGHAKAFLTAYPSITSYDASDRDPLALTLSSQ 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ-KSGPLDM 135
            +  +KE+  L  A+F  L   + +   DGV+ DLGVSSMQ+D   RGFSFQ +   LDM
Sbjct: 65  ALEPFKERVHLRHASFQDLSHSLEEHVYDGVIADLGVSSMQLDDLSRGFSFQGEEHYLDM 124

Query: 136 RMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM    GISAS+V+     ++L +I    GEE    + A AIV  R+    +T +DL   
Sbjct: 125 RMDPTQGISASEVLQCLREEELGKIFREYGEEPLWRQAAKAIVHFRKHKRIETVRDLKEA 184

Query: 195 IQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
             +    +    +IHP T  FQALR+FVN E ++L   L SA + L   G ++++SF S 
Sbjct: 185 TSRVFPSYRLRKKIHPLTLIFQALRVFVNGEDQQLRTLLESAMRWLAPQGRVVIISFCSS 244

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           EDR VK+FF          RH   +     + + +TKKV++PT +++  N RSRSAKLR 
Sbjct: 245 EDRPVKQFF----------RHAEATG----LGRVVTKKVIMPTFQEIRRNPRSRSAKLRC 290


>gi|303240801|ref|ZP_07327314.1| S-adenosyl-methyltransferase MraW [Acetivibrio cellulolyticus CD2]
 gi|302591689|gb|EFL61424.1| S-adenosyl-methyltransferase MraW [Acetivibrio cellulolyticus CD2]
          Length = 313

 Score =  176 bits (447), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 113/315 (35%), Positives = 175/315 (55%), Gaps = 31/315 (9%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQ 75
           +H PVL E+ I  L+  P  V +D T G  G+S + + K+G    +I LD+D FA+   +
Sbjct: 4   EHKPVLFEECIENLDIKPDGVYVDGTLGGAGHSSAIYQKLGEKGMLIGLDQDGFALETSK 63

Query: 76  ETMRDYKEQFSLFQAT--FSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           + + D   + SL  A   F  ++    +     VDG++ DLGVSS Q+D  +RGFS+ K 
Sbjct: 64  KRLEDQNGKGSLIFANTNFVNIKSVCFENKIACVDGILLDLGVSSHQLDEAERGFSYNKD 123

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM      +A  +VN+ + +++ +I+   GEE  ASRIA  IV+RR     +TT 
Sbjct: 124 APLDMRMDRRQKFTAETIVNEYSKEEIKKIIREFGEENWASRIAEFIVQRRDEKRIETTG 183

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I+  +  S +    HPA R+FQALRI VN+E+  L++ +      LK GG   ++
Sbjct: 184 ELVEIIKAAIPSSARREGPHPAKRTFQALRIAVNDELGILSKAIEEGVNLLKPGGRFCII 243

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF-----------QSITKKVVVPTQ 297
           +FHSLEDR+VK  F          +++ P    P+ F           +S+ +K +VP+ 
Sbjct: 244 TFHSLEDRIVKNEFN---------KYINPCTC-PSTFPVCVCGKKKLAESVHRKPIVPSV 293

Query: 298 EDVAFNRRSRSAKLR 312
           +++  N R+RSAKLR
Sbjct: 294 KELEENPRARSAKLR 308


>gi|237738334|ref|ZP_04568815.1| S-adenosyl-methyltransferase mraW [Fusobacterium mortiferum ATCC
           9817]
 gi|229420214|gb|EEO35261.1| S-adenosyl-methyltransferase mraW [Fusobacterium mortiferum ATCC
           9817]
          Length = 313

 Score =  176 bits (447), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 113/310 (36%), Positives = 174/310 (56%), Gaps = 20/310 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+PVL  + I  L      V LD T G GG+S    K  S+   +I++D+D  A+   ++
Sbjct: 9   HIPVLYRECIDNLVINKDGVYLDCTLGGGGHSEGILKELSDKGHLISIDQDQQAIDFAKK 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  Y +++ +F+  F  L   +   G   VDG++ D+GVSS Q+D  +RGFS++    L
Sbjct: 69  RLEKYGKKWQVFKNNFENLDMVLYMAGYDKVDGILMDIGVSSTQLDDPERGFSYRYDTRL 128

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+ S  +SA +VVN+   + L +I+   GEE+ A +IA  I + R     +TT +L 
Sbjct: 129 DMRMNRSNPLSAYEVVNEYPEEKLAKIIFEYGEERNARKIAKFICEARTEKNIETTGELV 188

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           ++I++   + +  + HPA ++FQA+RI VN E+E L + +  A  +LK GG L +++FHS
Sbjct: 189 AIIKRA--YPERAQKHPAKKTFQAIRIEVNRELEVLEKAIDKAVDSLKVGGRLGIITFHS 246

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSN------AHPAVFQSITKKVVVPTQEDVAFNRRS 306
           LEDRLVK  F     K +A     P           A  + IT+K +VP  E+V FN R+
Sbjct: 247 LEDRLVKTKF-----KDLATACKCPPGLPICVCGGKAKVKLITRKPIVPEGEEVEFNNRA 301

Query: 307 RSAKLRAGMR 316
            S+KLR   R
Sbjct: 302 HSSKLRVVER 311


>gi|169832477|ref|YP_001693854.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           Hungary19A-6]
 gi|262826832|sp|B1I953|RSMH_STRPI RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|168994979|gb|ACA35591.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           Hungary19A-6]
          Length = 316

 Score =  176 bits (446), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 110/309 (35%), Positives = 176/309 (56%), Gaps = 14/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           HV VLL + I +L+  P  + +DAT G  G+S       S   ++ A D+D  A+   Q+
Sbjct: 7   HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66

Query: 77  TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y E+   +  +  F  LQ  + + GV   DG+ +DLGVSS Q+D  +RGFS++K  
Sbjct: 67  RLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+  + ++A +VVN  +  DL RI    GE+K + +IA  I + R+  P +TT +
Sbjct: 127 PLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQEREVKPIETTTE 186

Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L+ +I K+   +K    + HPA + FQ++RI VN+E+    + ++ A   L   G + V+
Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQSIRIEVNDELGAADESIQQAMDMLALDGRISVI 245

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F   S  +V      IP +  P + + +++K ++P+ E++  N RS 
Sbjct: 246 TFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKM-ELVSRKPILPSAEELEANNRSH 304

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 305 SAKLRVARK 313


>gi|254299374|ref|ZP_04966824.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 406e]
 gi|157808911|gb|EDO86081.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 406e]
          Length = 319

 Score =  176 bits (446), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 119/312 (38%), Positives = 182/312 (58%), Gaps = 21/312 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMG--SNVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  V +D TFG GG+SR+   ++G    +IA D+DP A+    E
Sbjct: 13  HRTVLLDEAVDALVTRPDGVYVDGTFGRGGHSRAVLARLGDAGRLIAFDKDPRAIETA-E 71

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           ++ D +  F +   +F+ ++  +  +GV    GV+ DLGVSS Q+D   RGFSF+ +GPL
Sbjct: 72  SIEDAR--FEIVHDSFAAMKGALDARGVGRVSGVLLDLGVSSPQVDDPARGFSFRANGPL 129

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTT 188
           DMRM  + G SA++ + +A+V++LT ++   GEE+ A +IA AIV RR  +    P  +T
Sbjct: 130 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRLGPLDST 189

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ ++   V   +  +  PATR+FQA+RI VN E+ +L   L +A   L+ GG L+V+
Sbjct: 190 GELAQIVGHVVKTREKGK-DPATRTFQAIRIHVNQELADLQVVLEAALSLLEQGGRLVVI 248

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNRR 305
           SFHSLEDR+VK+F  + +    AV   +P  A  A       K++    P   +VA N R
Sbjct: 249 SFHSLEDRIVKRFLQAHA-SAPAVDRRLPIRA--ADLPRPPLKLLGRMFPNDAEVAANPR 305

Query: 306 SRSAKLRAGMRT 317
           +RSA +R   R 
Sbjct: 306 ARSAVMRIAERV 317


>gi|124003786|ref|ZP_01688634.1| S-adenosyl-methyltransferase MraW [Microscilla marina ATCC 23134]
 gi|123990841|gb|EAY30308.1| S-adenosyl-methyltransferase MraW [Microscilla marina ATCC 23134]
          Length = 303

 Score =  176 bits (446), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 114/300 (38%), Positives = 167/300 (55%), Gaps = 14/300 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H PV+L++ I  L   P  V +D TFG GG+S++  +  S    + A D+D       QE
Sbjct: 5   HQPVMLKECIEGLAINPDGVYVDVTFGGGGHSKAILEQLSEKGKLYAFDQD---ADAKQE 61

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                   F L +A F  L+ Y+   GV   DG++ DLG+SS QID  +RGFS +    L
Sbjct: 62  AKEIDHPGFYLIRANFRYLKKYLKMYGVSKVDGILADLGISSHQIDTPERGFSTRFDAYL 121

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRMS S  ++A DVVN+ +  +L +ILG+ GE K A  +A  IV+ RQ A   T ++L 
Sbjct: 122 DMRMSESIEVTAQDVVNEYSESELHKILGMYGELKNAKTVASTIVRARQDAAINTVEELK 181

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           S +++  +  +        + FQALRI VN EI+ L   L  A + LK  G L+V+S+HS
Sbjct: 182 SAVKR--HAPRGREFKFFAQVFQALRIEVNEEIQVLEVMLEQAAEVLKPQGRLVVMSYHS 239

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR VK +      +  A + M  +   P   ++I +K++   +E++A N R+RSAKLR
Sbjct: 240 LEDRPVKNYIQKGRFRGEAEKDMFGNVLKP--LRAINRKIITAQEEEIALNNRARSAKLR 297


>gi|229817311|ref|ZP_04447593.1| hypothetical protein BIFANG_02572 [Bifidobacterium angulatum DSM
           20098]
 gi|229785100|gb|EEP21214.1| hypothetical protein BIFANG_02572 [Bifidobacterium angulatum DSM
           20098]
          Length = 354

 Score =  176 bits (446), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 112/308 (36%), Positives = 169/308 (54%), Gaps = 15/308 (4%)

Query: 20  HVPVLLEKVIAL----LNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73
           H PVLLE  + L    L+     +I+D T G  G++ +F K    + ++ +DRD  A++ 
Sbjct: 12  HQPVLLEDCVRLVTGGLSRKQSPIIVDCTLGLAGHATAFLKAAPQARLVGIDRDAEALAL 71

Query: 74  GQETMR--DYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQ 128
             E M+     ++F    A F +    + D G   VD    DLG+SS+QID  +RGFS+ 
Sbjct: 72  ATERMKAEGLADRFIPVHAPFDEFTRALDDNGIHHVDAAFMDLGLSSLQIDETERGFSYS 131

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR-QSAPFQ 186
              PLDMRM  S  ++A  V+ + + +DL RI  + GEE+ A  IA  IV RR Q  P  
Sbjct: 132 HDAPLDMRMDVSQALTAEQVLAEYDERDLARIFKVYGEERFARPIARRIVARRTQEGPLT 191

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T+ +L+ L+ + +  +     +PA R FQALRI VN E+++LA  L      L  GG ++
Sbjct: 192 TSAELNELVDEVIPKAHRPAGNPAKRVFQALRIEVNGELDKLAGTLPQIALKLNKGGRIV 251

Query: 247 VVSFHSLEDRLVKKFFA-SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           V S+HSLED+ VK F     + +V A   ++P  A P  F+ +T+  V   ++++A N R
Sbjct: 252 VESYHSLEDKTVKSFMTQGLTARVPANMPIVPPEAMP-FFKELTRGAVKADEQEIASNPR 310

Query: 306 SRSAKLRA 313
           S S +LRA
Sbjct: 311 SASVRLRA 318


>gi|322375922|ref|ZP_08050433.1| S-adenosyl-methyltransferase MraW [Streptococcus sp. C300]
 gi|321279190|gb|EFX56232.1| S-adenosyl-methyltransferase MraW [Streptococcus sp. C300]
          Length = 316

 Score =  176 bits (446), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 111/309 (35%), Positives = 175/309 (56%), Gaps = 14/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           HV VLL + I +L+  P    +DAT G  G+S       S   ++ A D+D  A+   Q+
Sbjct: 7   HVTVLLHETIDMLDVKPDGTYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66

Query: 77  TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y E+   +  +  F  LQ  + + GV   DG+ +DLGVSS Q+D  +RGFS++K  
Sbjct: 67  RLAPYIEKGMVTFIKDNFRHLQARLQEAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+  + ++A +VVN  +  DL RI    GE+K + +IA  I + R+  P +TT +
Sbjct: 127 PLDMRMNQEASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186

Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L+ +I K+   +K    + HPA + FQA+RI VN+E+    + ++ A   L   G + V+
Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVI 245

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F   S  +V      IP +  P + + +++K ++P+ E++  N RS 
Sbjct: 246 TFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKM-ELVSRKPILPSAEELEANNRSH 304

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 305 SAKLRVARK 313


>gi|262831468|sp|C5WIJ4|RSMH_STRDG RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 316

 Score =  176 bits (446), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 110/308 (35%), Positives = 171/308 (55%), Gaps = 12/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           HV VLL + + +L+  P  + +DAT G  G+S       S   ++   D+D  A+   Q 
Sbjct: 7   HVTVLLHETVDMLDIKPNGIYVDATLGGSGHSAYLLSKLSEQGHLYCFDQDQKAIDNAQV 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSG 131
           T++ Y  K Q +  +  F  L+  +   GVD   G+++DLGVSS Q+D  +RGFS+ +  
Sbjct: 67  TLKSYIDKGQVTFIKDNFRHLKARLTALGVDEIDGILYDLGVSSPQLDERERGFSYNQDA 126

Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM     ++A DVVN     DL +I    GE+K + +IA  I + R   P +TT +
Sbjct: 127 PLDMRMDRQAPLTAYDVVNTYPFNDLVKIFFKYGEDKFSKQIARKIEQARAIKPIETTTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ LI+      +   + HPA + FQA+RI VN+E+    + ++ A + L   G + V++
Sbjct: 187 LAELIKAAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQDAMELLALDGRISVIT 246

Query: 250 FHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDRL K+ F   S   V      IP +  P  F+ +++K ++P+QE++A N R+ S
Sbjct: 247 FHSLEDRLTKQLFKEASTVDVPKGLPFIPEDMKP-TFELVSRKPILPSQEELAANNRAHS 305

Query: 309 AKLRAGMR 316
           AKLR   +
Sbjct: 306 AKLRVAKK 313


>gi|154505717|ref|ZP_02042455.1| hypothetical protein RUMGNA_03257 [Ruminococcus gnavus ATCC 29149]
 gi|153794014|gb|EDN76434.1| hypothetical protein RUMGNA_03257 [Ruminococcus gnavus ATCC 29149]
          Length = 315

 Score =  176 bits (446), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 103/303 (33%), Positives = 169/303 (55%), Gaps = 11/303 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H  VLLE+ +  L   P  + +DAT G GG++       S+    I +D+D  A+     
Sbjct: 9   HTSVLLEETVDGLKVKPDGIYVDATLGGGGHAYEVASRLSDKGRFIGIDQDADAIEAAGA 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  + E+ ++ ++ +  ++  + + G   VDG+V DLGVSS Q+D  +RGFS++   PL
Sbjct: 69  RLSGFGEKVTIIRSNYCDMKPRLHEIGIDKVDGIVIDLGVSSYQLDTAERGFSYRTDAPL 128

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM      +A D+VN  +  +L R++   GE+K A  IA  IV  R   P +TT  L+
Sbjct: 129 DMRMDQRQTTTAKDIVNDYSEAELYRVIRDYGEDKFAKNIAKHIVMERGKHPIETTGQLN 188

Query: 193 SLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
            +I++ +   F K +  HP+ R+FQA+RI +N E++ L + L      L  GG + +++F
Sbjct: 189 EVIRRAIPMKFQKTSG-HPSKRTFQAIRIELNRELDVLRETLDDMIDMLNPGGRICIITF 247

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  F           H  +    + +  + IT+K ++P++E++ +N RS+SA
Sbjct: 248 HSLEDRIVKSAFRKNENPCTCPSHFPVCVCGNISKGKVITRKPILPSEEELMYNSRSKSA 307

Query: 310 KLR 312
           KLR
Sbjct: 308 KLR 310


>gi|257438103|ref|ZP_05613858.1| S-adenosyl-methyltransferase MraW [Faecalibacterium prausnitzii
           A2-165]
 gi|257199434|gb|EEU97718.1| S-adenosyl-methyltransferase MraW [Faecalibacterium prausnitzii
           A2-165]
          Length = 322

 Score =  176 bits (446), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 113/304 (37%), Positives = 169/304 (55%), Gaps = 12/304 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-----KMGSNVIALDRDPFAVSC 73
           +HVPVLL + +  L   P    LD T G  G+SR        + G  +I+LD+DP AV  
Sbjct: 16  EHVPVLLNECLDGLKIDPAGTYLDGTAGGAGHSRQIALRLNGEQGGRLISLDQDPDAVQT 75

Query: 74  GQETMRDYKEQFSLFQATF---SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +  +       ++ Q  F    Q  + +  + ++G + DLGVSS Q+D   RGFS++  
Sbjct: 76  ARARLAGLPA--TVVQINFRYAGQALEQLGIETINGALLDLGVSSHQLDDAARGFSYRAD 133

Query: 131 GPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            PLDMRMS  G +A+D+VN  + ++L RIL   GEE  A +IA  IV+ R++AP +TT  
Sbjct: 134 APLDMRMSQEGETAADLVNSESREELARILRDYGEEPFAWQIAGRIVEARETAPIETTLQ 193

Query: 191 LSSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ ++   +  ++  +  +P+ R+FQALRI VN+E++ L +GL +    L  GG L V++
Sbjct: 194 LADIVASAMPPAERRKNKNPSRRTFQALRIAVNHELDALEEGLDTIFAHLAPGGRLCVIT 253

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDRLVK  F   S          +      A  + IT+K +    +++  NRRSRS
Sbjct: 254 FHSLEDRLVKNKFRRWSTACTCPPEFPVCVCGGKAKAKLITRKPIEANTQELEENRRSRS 313

Query: 309 AKLR 312
           A LR
Sbjct: 314 AHLR 317


>gi|299768536|ref|YP_003730562.1| S-adenosyl-methyltransferase MraW [Acinetobacter sp. DR1]
 gi|298698624|gb|ADI89189.1| S-adenosyl-methyltransferase MraW [Acinetobacter sp. DR1]
          Length = 307

 Score =  176 bits (446), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 123/315 (39%), Positives = 175/315 (55%), Gaps = 26/315 (8%)

Query: 20  HVPVLL-EKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDP----FAV 71
           H+ VLL E V +LL      V +DATFG GG++R    K+  N  V A D+DP     A 
Sbjct: 3   HISVLLFETVESLLADRTTGVYIDATFGRGGHTRLLLSKLDENARVYAFDKDPQALEVAA 62

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQ 128
           +  QE  R     F++  A+F+ +++ + + GV   DG++ DLGVSS Q+D  +RGFSF 
Sbjct: 63  ALAQEDPR-----FTIIHASFADIKEKMQEIGVMSVDGIMADLGVSSPQLDQAERGFSFM 117

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           + GPLDMRM  S G++A++ + +   + L  I+   GEE+ + RIA AI   + +    T
Sbjct: 118 QDGPLDMRMDNSKGLTAAEWLLEIEEEQLANIIYQYGEERYSRRIAKAI---KNAGKLDT 174

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T  L+ L+ KT +       HPATR+FQA+RI +N E+E++   L  A   LK  G L V
Sbjct: 175 TAQLAELV-KTAHPKWEKHKHPATRTFQAIRIAINKELEDIEVFLPQAVDLLKPEGRLSV 233

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV--VVPTQEDVAFNRR 305
           +SFHSLEDRL+K+F    S         +P      V     KK+  V  ++E+V  N R
Sbjct: 234 ISFHSLEDRLIKQFIQKESTLAEDFGWGMPEQ---RVDTRRLKKISRVRASEEEVKANPR 290

Query: 306 SRSAKLRAGMRTVER 320
           SRSA LR   R  E+
Sbjct: 291 SRSAWLRVAERLEEK 305


>gi|225860373|ref|YP_002741882.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|303255210|ref|ZP_07341284.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae BS455]
 gi|262825688|sp|C1CPL0|RSMH_STRZT RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|225727237|gb|ACO23088.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|302597843|gb|EFL64915.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae BS455]
          Length = 316

 Score =  176 bits (446), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 111/309 (35%), Positives = 175/309 (56%), Gaps = 14/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           HV VLL + I +L+  P  + +DAT G  G+S       S   ++ A D+D  A+   Q+
Sbjct: 7   HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66

Query: 77  TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y E+   +  +  F  LQ  + + GV   DG+ +DLGVSS Q+D  +RGFS++K  
Sbjct: 67  RLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+  + ++A +VVN  +  DL RI    GE+K + +IA  I + R+  P +TT +
Sbjct: 127 PLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQAREVKPIETTTE 186

Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L+ +I K+   +K    + HPA + FQA+RI VN+E+    + ++ A   L   G + V+
Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVI 245

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F   S  +V      IP +  P + + + +K ++P+ E++  N RS 
Sbjct: 246 TFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKM-ELVARKPILPSAEELEANNRSH 304

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 305 SAKLRVARK 313


>gi|298346700|ref|YP_003719387.1| S-adenosyl-methyltransferase [Mobiluncus curtisii ATCC 43063]
 gi|304389591|ref|ZP_07371553.1| S-adenosyl-methyltransferase MraW [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|298236761|gb|ADI67893.1| S-adenosyl-methyltransferase [Mobiluncus curtisii ATCC 43063]
 gi|304327144|gb|EFL94380.1| S-adenosyl-methyltransferase MraW [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 379

 Score =  176 bits (446), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 110/299 (36%), Positives = 173/299 (57%), Gaps = 16/299 (5%)

Query: 37  GKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQ 94
           G V++DAT G GG+S    +      +I +DRDP A       + D+  + S+   T+ +
Sbjct: 45  GPVLVDATLGMGGHSAYLLESHPQLRIIGIDRDPQARDLAATRLSDFANRLSIVGTTYGE 104

Query: 95  LQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSF-QKSGPLDMRMS-CSGISASDVVN 149
           L D +   G   VDG++ DLGVSS+Q+D  +RGF++     PLDMRM+  SG +A+D +N
Sbjct: 105 LDDVLAQHGLSQVDGILADLGVSSLQLDEAERGFAYAHPEAPLDMRMNQSSGFTAADFLN 164

Query: 150 QANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYF-SKNNRIH 208
            A V+++  +L   GEEK +  +A AIVK RQ+ P Q +  L  +I+ T+   ++    +
Sbjct: 165 LAEVEEIAAVLHTYGEEKFSWPLAKAIVKARQNQPLQVSGQLVQIIRDTIPAPARRTGGN 224

Query: 209 PATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFAS---- 264
           PA R+FQALR+ VN+E+ +L + L  A  +++ GG ++V S+ SLEDRLVK+ FA+    
Sbjct: 225 PAKRTFQALRVAVNDELGDLERFLTKALASVRVGGRIVVESYQSLEDRLVKRAFAAGIHP 284

Query: 265 RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIE 323
            + K + V   +P  A P   + +T    +  + +VA N R+ S +LRA  +T E   E
Sbjct: 285 AAPKGLPV---LPEQAQP-WLRDLTHGSRLADESEVAQNPRAASLRLRAVEKTREPHPE 339


>gi|88704092|ref|ZP_01101807.1| S-adenosyl-methyltransferase mraW [Congregibacter litoralis KT71]
 gi|88701919|gb|EAQ99023.1| S-adenosyl-methyltransferase mraW [Congregibacter litoralis KT71]
          Length = 308

 Score =  176 bits (446), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 120/300 (40%), Positives = 174/300 (58%), Gaps = 9/300 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H  VLL + +  L  +P  + +D TFG GG+SR   +   N   + A D+D  A    +E
Sbjct: 5   HETVLLHEAVDALVGSPAGLYVDGTFGRGGHSREILRRLDNQGRLFACDKDEEAERDAEE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +    ++FS  + +F+ L  ++ ++G   VDG++ DLGVSS Q+D  +RGFSFQ+ GPL
Sbjct: 65  LLAG-DDRFSFARGSFAALPAFLEERGLGAVDGILLDLGVSSPQLDQAERGFSFQQDGPL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  S G SA+D +  A  +++  +L   GEE+ A RIA AIVK R   P   T  L+
Sbjct: 124 DMRMDRSRGESAADWIAAAPEQEIIDVLREYGEERYARRIAAAIVKARSEKPLTRTAQLA 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           S++ +     + ++ HPATRSFQA+RI VN E+++LA+ L  A   L  GG L+V+SFHS
Sbjct: 184 SIVSEAHPRWEKHK-HPATRSFQAIRIRVNRELDDLAELLSLALSVLAVGGRLVVISFHS 242

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDRLVK+     S      R +   +    V   +  K V  + ++VA N RSRSA +R
Sbjct: 243 LEDRLVKRHLRDMSRGPQLPRDLPVRDVDVGVPMRLLGKAVRASDQEVAANPRSRSAIMR 302


>gi|315656834|ref|ZP_07909721.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Mobiluncus curtisii subsp. holmesii ATCC 35242]
 gi|315492789|gb|EFU82393.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Mobiluncus curtisii subsp. holmesii ATCC 35242]
          Length = 378

 Score =  176 bits (446), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 110/299 (36%), Positives = 173/299 (57%), Gaps = 16/299 (5%)

Query: 37  GKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQ 94
           G V++DAT G GG+S    +      +I +DRDP A       + D+  + S+   T+ +
Sbjct: 45  GPVLVDATLGMGGHSAYLLESHPQLRIIGIDRDPQARDLAATRLSDFANRLSIVGTTYGE 104

Query: 95  LQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSF-QKSGPLDMRMS-CSGISASDVVN 149
           L D +   G   VDG++ DLGVSS+Q+D  +RGF++     PLDMRM+  SG +A+D +N
Sbjct: 105 LDDVLAQHGLSQVDGILADLGVSSLQLDEAERGFAYAHPEAPLDMRMNQSSGFTAADFLN 164

Query: 150 QANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYF-SKNNRIH 208
            A V+++  +L   GEEK +  +A AIVK RQ+ P Q +  L  +I+ T+   ++    +
Sbjct: 165 LAEVEEIAAVLHTYGEEKFSWPLAKAIVKARQNQPLQVSGQLVQIIRDTIPAPARRTGGN 224

Query: 209 PATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFAS---- 264
           PA R+FQALR+ VN+E+ +L + L  A  +++ GG ++V S+ SLEDRLVK+ FA+    
Sbjct: 225 PAKRTFQALRVAVNDELGDLERFLTKALASVRVGGRIVVESYQSLEDRLVKRAFAAGIHP 284

Query: 265 RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIE 323
            + K + V   +P  A P   + +T    +  + +VA N R+ S +LRA  +T E   E
Sbjct: 285 AAPKGLPV---LPEQAQP-WLRDLTHGSRLADESEVAQNPRAASLRLRAVEKTREPHPE 339


>gi|83720235|ref|YP_441658.1| S-adenosyl-methyltransferase MraW [Burkholderia thailandensis E264]
 gi|167580465|ref|ZP_02373339.1| S-adenosyl-methyltransferase MraW [Burkholderia thailandensis
           TXDOH]
 gi|167618573|ref|ZP_02387204.1| S-adenosyl-methyltransferase MraW [Burkholderia thailandensis Bt4]
 gi|257137827|ref|ZP_05586089.1| S-adenosyl-methyltransferase MraW [Burkholderia thailandensis E264]
 gi|123537607|sp|Q2SZJ1|RSMH_BURTA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|83654060|gb|ABC38123.1| S-adenosyl-methyltransferase MraW [Burkholderia thailandensis E264]
          Length = 313

 Score =  176 bits (446), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 119/313 (38%), Positives = 183/313 (58%), Gaps = 23/313 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAV--SCG 74
           H  VLL++ +  L   P  V +D TFG GG+SR+     S+   +IA D+DP A+  + G
Sbjct: 7   HRTVLLDEAVDALVTRPDGVYVDGTFGRGGHSRAVLARLSDAGRLIAFDKDPRAIETASG 66

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            E  R     F +   +F+ ++  +  +GV    GV+ DLGVSS Q+D  +RGFSF+ +G
Sbjct: 67  IEDAR-----FEIVHDSFAAMKGALDARGVGRVSGVLLDLGVSSPQVDDPERGFSFRANG 121

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQ 186
           PLDMRM  + G SA++ + +A+V++LT ++   GEE+ A +IA AIV RR  +    P  
Sbjct: 122 PLDMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRLGPLD 181

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           +T +L+ ++   V   +  +  PATR+FQA+RI VN E+ +L   L +A   L+ GG L+
Sbjct: 182 STGELAQIVGHVVKTREKGK-DPATRTFQAIRIHVNQELADLQVVLEAALSLLEQGGRLV 240

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA--HPAVFQSITKKVVVPTQEDVAFNR 304
           V+SFHSLEDR+VK+F  + +    AV   +P  A   P+    +  + + P+  +VA N 
Sbjct: 241 VISFHSLEDRIVKRFLQTHA-SAPAVDRRLPIRAVDLPSPPLKLLGR-MFPSDAEVAANP 298

Query: 305 RSRSAKLRAGMRT 317
           R+RSA +R   R 
Sbjct: 299 RARSAVMRIAERV 311


>gi|325106882|ref|YP_004267950.1| ribosomal RNA small subunit methyltransferase H [Planctomyces
           brasiliensis DSM 5305]
 gi|324967150|gb|ADY57928.1| Ribosomal RNA small subunit methyltransferase H [Planctomyces
           brasiliensis DSM 5305]
          Length = 307

 Score =  176 bits (446), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 112/304 (36%), Positives = 161/304 (52%), Gaps = 24/304 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H PVLL + I  +   PG  ++D T GA G+S    K    G  +I LDRDP  ++    
Sbjct: 9   HRPVLLRETIQGMELKPGMTVIDGTVGAAGHSSEIWKRIQPGGRLIGLDRDPEMLARSSC 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
            + D  +         + + +++  + VD ++ DLG+SS Q+    RGF F   G LDMR
Sbjct: 69  RLGDSADLIHASYLDANGVLEHLGVEKVDRLLVDLGLSSDQLADDQRGFGFATEGQLDMR 128

Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
              + G      +N+A+V ++T++L   GEE QA++IA  +V  R+S P  +   L  +I
Sbjct: 129 FDMTQGKPVHHWLNKADVAEITKVLSEYGEEPQAAQIAAKVVDARRSQPITSVAALREII 188

Query: 196 QKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLR-SAEKALKAGGLLIVVSFHS 252
           +K          + HPATR+FQALRIF N E+E L + L  +A   LK GGLL V++FHS
Sbjct: 189 EKVAGGRGRAAGKSHPATRTFQALRIFANAELEHLQRFLTITAPYVLKPGGLLAVITFHS 248

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDRL K+  A R                  V+   +KK + PT  ++  N RSRSAKLR
Sbjct: 249 LEDRLTKQALADRE-----------------VWADSSKKPIGPTPLEIKMNPRSRSAKLR 291

Query: 313 AGMR 316
            G+R
Sbjct: 292 IGIR 295


>gi|262066020|ref|ZP_06025632.1| S-adenosyl-methyltransferase MraW [Fusobacterium periodonticum ATCC
           33693]
 gi|291380270|gb|EFE87788.1| S-adenosyl-methyltransferase MraW [Fusobacterium periodonticum ATCC
           33693]
          Length = 314

 Score =  176 bits (446), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 105/313 (33%), Positives = 176/313 (56%), Gaps = 20/313 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+PVL  + +  L   P  V +D T G G +S    +  S+   ++++D+D  A+   ++
Sbjct: 9   HIPVLYYETLDNLVINPDGVYIDCTLGGGSHSEGILERLSDKGLLLSIDQDSNAIEYSKK 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  Y  ++ + +  F  +       G   VDG++ D+GVSS Q+D  +RGFS++    L
Sbjct: 69  RLEKYASKWKVLKGNFENIDTLAYMAGIDKVDGILMDIGVSSKQLDEAERGFSYRYDVKL 128

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+    +SA DVVN  + ++L+RI+   GEE+ A +IA  I + R++ P  TT +L 
Sbjct: 129 DMRMNTEQKLSAYDVVNTYSEEELSRIIFEYGEERFARKIAKLICENRKTKPITTTFELV 188

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +LI++   + +    HPA ++FQA+RI VN E+E L   +  A + LK GG L +++FHS
Sbjct: 189 ALIRRA--YPERASKHPAKKTFQAIRIEVNRELEVLENAMSKAVELLKVGGRLGIITFHS 246

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV------FQSITKKVVVPTQEDVAFNRRS 306
           LEDR+VK  F     K +A     P +    +      F+ IT+K ++P ++++  N R+
Sbjct: 247 LEDRIVKNKF-----KDLATACKCPKDIPICICGGVKKFEVITRKPIIPVEDELKNNNRA 301

Query: 307 RSAKLRAGMRTVE 319
            S+KLR   R ++
Sbjct: 302 HSSKLRILERILD 314


>gi|309388985|gb|ADO76865.1| S-adenosyl-methyltransferase MraW [Halanaerobium praevalens DSM
           2228]
          Length = 310

 Score =  176 bits (446), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 118/311 (37%), Positives = 171/311 (54%), Gaps = 20/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCGQE 76
           H  VLL++ I  L      + LD T G  G+S       S +   IALDRD  A+   + 
Sbjct: 5   HQAVLLKEAIDYLEIKKDGIYLDGTLGRAGHSSEILHNLSEIGKLIALDRDTAAIKAVES 64

Query: 77  TMRDYKE---QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                K    + S FQ    Q+ D +  K VDG++FDLGVSS Q+D  +RGFS+QK+GPL
Sbjct: 65  KFSKSKSLILKHSNFQ-DLDQVLDQLKIKAVDGMLFDLGVSSPQLDNPERGFSYQKNGPL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+ S  ++A  +VN  +  +L +I+   GEE  ++RIA  IVK R+    +TT DL 
Sbjct: 124 DMRMNSSQSLTAKTIVNNYSAAELEKIITEYGEENWSARIAEFIVKMRKEKVIETTDDLV 183

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  +  + + +  HPA R+FQALRI  NNE+E+L   +  A   LK GG L++++FH
Sbjct: 184 EVIKAAIPKAVRRSGGHPARRTFQALRIETNNELEQLKNLIDKAVSYLKPGGRLVIITFH 243

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV------FQSITKKVVVPTQEDVAFNRR 305
           SLEDR+VK  F     + +A     P +    V       + ITK  +  ++ +   N R
Sbjct: 244 SLEDRIVKHKF-----RDLAKDCTCPPDFPICVCDKKSEVKVITKSPIQASEIEKEGNPR 298

Query: 306 SRSAKLRAGMR 316
           SRSAK+R   +
Sbjct: 299 SRSAKMRVAEK 309


>gi|167564207|ref|ZP_02357123.1| S-adenosyl-methyltransferase MraW [Burkholderia oklahomensis EO147]
 gi|167571357|ref|ZP_02364231.1| S-adenosyl-methyltransferase MraW [Burkholderia oklahomensis C6786]
          Length = 313

 Score =  176 bits (446), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 119/313 (38%), Positives = 186/313 (59%), Gaps = 23/313 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGS--NVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  V +D TFG GG+SR+   ++G+   +IA D+DP A+    E
Sbjct: 7   HRTVLLDEAVDALVTRPDGVYVDGTFGRGGHSRAVLGRLGAAGRLIAFDKDPRAI----E 62

Query: 77  TMRDYKE-QFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           T +  ++ +F +   +F+ L+  +  +GV    GV+ DLGVSS Q+D  +RGFSF+ +GP
Sbjct: 63  TAKGIEDARFEIVHDSFAALKGALEARGVGRVSGVLLDLGVSSPQVDDPERGFSFRANGP 122

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQT 187
           LDMRM  + G SA++ + +A+V++LT ++   GEE+ A +IA AIV RR  +    P  +
Sbjct: 123 LDMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRLGPLDS 182

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T +L+ ++   V   +  +  PATR+FQA+RI VN E+ +L   L +A  +L+ GG L+V
Sbjct: 183 TGELAQIVGHVVKTREKGK-DPATRTFQAIRIHVNQELADLQVVLEAALSSLEQGGRLVV 241

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNR 304
           +SFHSLEDR+VK+F  + +    AV   +P  A      S   K++    P+  +V  N 
Sbjct: 242 ISFHSLEDRIVKRFMQTHA-SAPAVDRRLPIRA--VDLPSPPLKLLGRKFPSDAEVLANP 298

Query: 305 RSRSAKLRAGMRT 317
           R+RSA +R   R 
Sbjct: 299 RARSAVMRIAERV 311


>gi|317506606|ref|ZP_07964398.1| MraW methylase [Segniliparus rugosus ATCC BAA-974]
 gi|316255115|gb|EFV14393.1| MraW methylase [Segniliparus rugosus ATCC BAA-974]
          Length = 316

 Score =  176 bits (445), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 105/298 (35%), Positives = 169/298 (56%), Gaps = 8/298 (2%)

Query: 24  LLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETM 78
           +L +V++LL PA   P  V++D T G GG++R+  +      V+ +DRD  A+   +E +
Sbjct: 1   MLNRVVSLLAPAFDAPDPVLVDGTLGLGGHTRALLERFPTLRVVGMDRDAKAIEVAKERL 60

Query: 79  RDYKEQFSLFQATFSQLQDYVPD-KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
               ++     A + +++  + D + V G + DLGVSSMQ+D  +RGF++ K  PLDMRM
Sbjct: 61  GGLADRVRFVHARYDEVERALGDGENVQGYLLDLGVSSMQLDQAERGFAYSKDAPLDMRM 120

Query: 138 SCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
             S  ++A +V+     K+L R+L   GEE+ A+RIA  IV+RR + P  ++ +L  LI 
Sbjct: 121 DTSAELTAHEVLATYGEKELARVLRTYGEERFAARIAAEIVRRRATEPLASSAELVRLID 180

Query: 197 KTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
             +   +K    HPA R+FQALR+ VN+E+  L   L  A  AL   G ++V+++ SLED
Sbjct: 181 DVIPAKAKRTGGHPAKRTFQALRVEVNDELGSLRAVLPKALAALAPQGRIVVLAYQSLED 240

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           R+VK  FA  +     +   +      A F S+T+   +  +E+ + N R+ S +LRA
Sbjct: 241 RIVKDEFARATTSRTPIGLPVELPGFEAEFVSLTRGAELAGEEETSENPRAASVRLRA 298


>gi|76579862|gb|ABA49337.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 1710b]
          Length = 413

 Score =  176 bits (445), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 118/311 (37%), Positives = 182/311 (58%), Gaps = 19/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMG--SNVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  V +D TFG GG+SR+   ++G    +IA D+DP A+    E
Sbjct: 107 HRTVLLDEAVDALVTRPDGVYVDGTFGRGGHSRAVLARLGDAGRLIAFDKDPRAIETA-E 165

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           ++ D +  F +   +F+ ++  +  +GV    GV+ DLGVSS Q+D   RGFSF+ +GPL
Sbjct: 166 SIEDAR--FEIVHDSFAAMKGALDARGVGRVSGVLLDLGVSSPQVDDPARGFSFRANGPL 223

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTT 188
           DMRM  + G SA++ + +A+V++LT ++   GEE+ A +IA AIV RR  +    P  +T
Sbjct: 224 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRLGPLDST 283

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ ++   V   +  +  PATR+FQA+RI VN E+ +L   L +A   L+ GG L+V+
Sbjct: 284 GELAQIVGHVVKTREKGK-DPATRTFQAIRIHVNQELADLQVVLEAALSLLEQGGRLVVI 342

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH--PAVFQSITKKVVVPTQEDVAFNRRS 306
           SFHSLEDR+VK+F  + +    AV   +P  A   P     +  + + P   +VA N R+
Sbjct: 343 SFHSLEDRIVKRFLQAHA-SAPAVDRRLPIRAADLPRPPLKLLGR-MFPNDAEVAANPRA 400

Query: 307 RSAKLRAGMRT 317
           RSA +R   R 
Sbjct: 401 RSAVMRIAERV 411


>gi|260591737|ref|ZP_05857195.1| S-adenosyl-methyltransferase MraW [Prevotella veroralis F0319]
 gi|260536021|gb|EEX18638.1| S-adenosyl-methyltransferase MraW [Prevotella veroralis F0319]
          Length = 326

 Score =  176 bits (445), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 114/306 (37%), Positives = 171/306 (55%), Gaps = 21/306 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFA------ 70
           HVPVLL   I  LN  P  + +D TFG GG+SR   S  K G ++ + D+D  A      
Sbjct: 21  HVPVLLNDSIEGLNIHPNGIYVDVTFGGGGHSREILSRLKKGCHLYSFDQDADAEQNVSK 80

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
           +   +E +    ++F+  ++ F  L++   Y     +DG++ DLGVSS   D   RGFSF
Sbjct: 81  MGLSEEQI----DRFTFIRSNFRYLKNWMRYYSIDHIDGLLADLGVSSHHFDDETRGFSF 136

Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           +   PLDMRM+  +G +A+D++N+ + + +  IL + GE KQ+ RIA AIVK R+   F+
Sbjct: 137 RFEAPLDMRMNKRAGRTAADILNEYDEEQIADILYLYGEIKQSRRIAAAIVKAREKRTFK 196

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           TT+DL S+++     ++  +     + FQALRI VN+E++ L + L  A + L  GG L 
Sbjct: 197 TTKDLLSIVEPFFLHAREKK--DMAKMFQALRIEVNHEMDALREMLLGATELLAPGGRLS 254

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+++HSLEDR+VK     +SG V               F+ I  KV+  +  +   N RS
Sbjct: 255 VITYHSLEDRMVKNIM--KSGNVEGKVKQDFYGRRETPFRLINNKVITASNAEQELNPRS 312

Query: 307 RSAKLR 312
           RSAKLR
Sbjct: 313 RSAKLR 318


>gi|312888802|ref|ZP_07748365.1| S-adenosyl-methyltransferase MraW [Mucilaginibacter paludis DSM
           18603]
 gi|311298677|gb|EFQ75783.1| S-adenosyl-methyltransferase MraW [Mucilaginibacter paludis DSM
           18603]
          Length = 300

 Score =  176 bits (445), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 114/304 (37%), Positives = 164/304 (53%), Gaps = 16/304 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MG--SNVIALDRDPFAVSCGQE 76
           H PV+L + I  LN  P    +D TFG GG+SR   K +G    +IA D+D   V     
Sbjct: 5   HNPVMLAECIEGLNINPEGTYVDVTFGGGGHSREILKHLGPQGKLIAFDQD---VDAQAN 61

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + D  E+F      F  L+++    G   VDG++ DLGVSS Q D  +RGFS +    L
Sbjct: 62  AIDD--ERFVFVDQNFRYLKNFCRLHGAIPVDGILADLGVSSHQFDKAERGFSTRFDADL 119

Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  S   +A D+VN     DL RI G+ GE + A  +A  IV  R ++P  T  DL 
Sbjct: 120 DMRMDQSATQTAKDIVNTYAEADLHRIFGMYGEIQNAKTLARTIVTARLNSPINTIADLK 179

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
             I   +   K N+     + FQALRI VN E+E L + L+   + L  GG L+V+S+HS
Sbjct: 180 GAIATLIPRGKENKY--LAQVFQALRIEVNQELEALQEFLKQTVEVLAPGGRLVVMSYHS 237

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDRLVK F A         + +  ++  P  F+++++K +  T++++  N R+RSAKLR
Sbjct: 238 LEDRLVKSFIAKGKFSGELEKDIYGNDDRP--FEAVSRKAITATEDEIKLNNRARSAKLR 295

Query: 313 AGMR 316
             ++
Sbjct: 296 IAVK 299


>gi|32266778|ref|NP_860810.1| S-adenosyl-methyltransferase MraW [Helicobacter hepaticus ATCC
           51449]
 gi|42559453|sp|Q7VGP1|RSMH_HELHP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|32262830|gb|AAP77876.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
          Length = 317

 Score =  176 bits (445), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 114/307 (37%), Positives = 175/307 (57%), Gaps = 18/307 (5%)

Query: 20  HVPVLLEKVIALLNP-APGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76
           H  VL  ++I  L+      +++D T G GG++    +   N  V A D+D +A++  +E
Sbjct: 3   HYSVLKNEMIQALDCLKEDSILIDCTLGFGGHTIGALQAYPNIEVYAFDKDIYALNLAKE 62

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++ Y +        FSQ  D VP+     V G++ D+GVSSMQ+D   RGFSF  S  L
Sbjct: 63  RLKPYLQNIHFCHNAFSQFLDIVPNVVLPRVRGIIADIGVSSMQLDETQRGFSFV-SSTL 121

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM   + ++A+ V+N  +   L  I  I GE +Q+ ++A  I   R+  PF +  +LS
Sbjct: 122 DMRMDTRADLNATKVINTYSPIRLEEIFRIYGEVRQSKKLAEIIAYERKKKPFSSCLELS 181

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL----LIVV 248
           +LI++  +F +   IHPAT +FQALRI VN+E+ EL + L + E A   G +    + ++
Sbjct: 182 TLIEQ--HFPRVGGIHPATLAFQALRIEVNDELGELKRLLHNIELAFDEGKIASCRVGII 239

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI---PSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           SFHSLEDR++K+ F   S   +     +     N H A  Q +TKK ++PT +++A N+R
Sbjct: 240 SFHSLEDRIIKQCFKQWSKSCICAEESLRCECGNNH-AKGQILTKKPIIPTPQEIAQNKR 298

Query: 306 SRSAKLR 312
           SRSAKLR
Sbjct: 299 SRSAKLR 305


>gi|238022305|ref|ZP_04602731.1| hypothetical protein GCWU000324_02212 [Kingella oralis ATCC 51147]
 gi|237866919|gb|EEP67961.1| hypothetical protein GCWU000324_02212 [Kingella oralis ATCC 51147]
          Length = 324

 Score =  176 bits (445), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 114/309 (36%), Positives = 169/309 (54%), Gaps = 10/309 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQE 76
           H+ VLL + +  LN     + +D TFG GG+SR    K+G    ++  D+DP A++  ++
Sbjct: 12  HITVLLNEAVDALNIQENGIYVDGTFGRGGHSRLILSKLGEKGRLVVFDKDPQAIAVARD 71

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +     + S+    FS  Q  + + GV   DG +FDLG+SS QID   RGFSF+   PL
Sbjct: 72  -LAAQDARVSVVHNGFSHFQAALDELGVAKIDGALFDLGISSPQIDDASRGFSFRFDAPL 130

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  + G SA+D +  A+  ++  ++   GEE+ +  IA AIV +R   P  TT  L+
Sbjct: 131 DMRMDTTRGQSAADWLAVASEDEINEVIKNYGEERFSRAIARAIVAQRGETPIDTTSKLA 190

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +  + V   +  +  PATR+FQA+RIF+N E++E+   L  A + L  GG L V++FHS
Sbjct: 191 KIAAQCVRTRERGQ-DPATRTFQAIRIFINRELDEIQAVLPQAVERLNLGGRLAVIAFHS 249

Query: 253 LEDRLVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDRLVK+F    +    +    M+     P        K +  + E+VA N R+RSA L
Sbjct: 250 LEDRLVKQFIRQYATHAPLPKWAMVREADLPQPPLRAIGKAIKASAEEVAANPRARSAVL 309

Query: 312 RAGMRTVER 320
           R   RT  R
Sbjct: 310 RVAERTAGR 318


>gi|191638270|ref|YP_001987436.1| S-adenosyl-methyltransferase MraW [Lactobacillus casei BL23]
 gi|239631645|ref|ZP_04674676.1| SAM-dependent methyltransferase for cell envelope biogenesis
           [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|301066319|ref|YP_003788342.1| SAM-dependent methyltransferase for cell envelope biogenesis
           [Lactobacillus casei str. Zhang]
 gi|263456244|sp|B3WDX7|RSMH_LACCB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|190712572|emb|CAQ66578.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Lactobacillus casei BL23]
 gi|239526110|gb|EEQ65111.1| SAM-dependent methyltransferase for cell envelope biogenesis
           [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|300438726|gb|ADK18492.1| SAM-dependent methyltransferase for cell envelope biogenesis
           [Lactobacillus casei str. Zhang]
 gi|327382302|gb|AEA53778.1| Ribosomal RNA small subunit methyltransferase H [Lactobacillus
           casei LC2W]
 gi|327385497|gb|AEA56971.1| Ribosomal RNA small subunit methyltransferase H [Lactobacillus
           casei BD-II]
          Length = 313

 Score =  176 bits (445), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 113/303 (37%), Positives = 163/303 (53%), Gaps = 12/303 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H  VLL++  A L   P  + +DAT G GG++R      +   +IA D+D  A++     
Sbjct: 6   HETVLLKEATAALAVKPAGIYVDATLGRGGHTRQILNQLTTGRLIAFDQDEAAIATVTAD 65

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
                +Q +L    F  L D +   G   VDG+++DLGVSS Q D   RGFS++   PLD
Sbjct: 66  FGTLPKQLTLVHRNFRDLTDALTTLGITEVDGILYDLGVSSPQFDDSKRGFSYRFDAPLD 125

Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM     + A  +VN+    DL RI    GEE  + +IA  I + R   P  TT  L  
Sbjct: 126 MRMDQRQTLDAKTIVNEWPYADLVRIFSRYGEEHFSKQIARRIEQARTVQPITTTFQLVE 185

Query: 194 LIQKTVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           LI+  +  +K  R   HPA + FQA+RI VN+E+  L   L  A K +  GG + V++F 
Sbjct: 186 LIKAGIP-AKARRTGGHPAKKVFQAIRIAVNDELSALESSLEQALKLINVGGRISVITFQ 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDRLVK  F   S      R +  IP++A P  ++ + +K ++P++E++A N R+ SA
Sbjct: 245 SLEDRLVKTMFKEVSSVQDVPRGLPVIPASAQPN-YRLVNRKPILPSEEELAVNHRAHSA 303

Query: 310 KLR 312
           KLR
Sbjct: 304 KLR 306


>gi|50914761|ref|YP_060733.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes
           MGAS10394]
 gi|50903835|gb|AAT87550.1| S-adenosyl-methyltransferase [Streptococcus pyogenes MGAS10394]
          Length = 337

 Score =  176 bits (445), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 112/323 (34%), Positives = 180/323 (55%), Gaps = 17/323 (5%)

Query: 5   SCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGS--NV 61
           + K M+   HH     V VLL + + +L+  P  + +DAT G  G+S     K+G   ++
Sbjct: 18  TIKVMTKEFHH-----VTVLLHETVDMLDIKPDGIYVDATLGGSGHSAYLLSKLGEEGHL 72

Query: 62  IALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSM 116
              D+D  A+   Q T++ Y  K Q +  +  F  L+  +   GVD   G+++DLGVSS 
Sbjct: 73  YCFDQDQKAIDNAQVTLKSYIDKGQVTFIKDNFRHLKARLTALGVDEIDGILYDLGVSSP 132

Query: 117 QIDCGDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175
           Q+D  +RGFS+++  PLDMRM   S ++A +VVN     DL +I    GE+K + +IA  
Sbjct: 133 QLDERERGFSYKQDAPLDMRMDRQSLLTAYEVVNTYPFNDLVKIFFKYGEDKFSKQIARK 192

Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRS 234
           I + R   P +TT +L+ LI+      +   + HPA + FQA+RI VN+E+    + ++ 
Sbjct: 193 IEQARAIKPIETTTELAELIKAAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQE 252

Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVV 293
           A + L   G + V++FHSLEDRL K+ F   S   V     +IP +  P  F+ +++K +
Sbjct: 253 AMELLALDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPLIPEDMKPK-FELVSRKPI 311

Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316
           +P+  ++A N+R+ SAKLR   +
Sbjct: 312 LPSHSELAANKRAHSAKLRVAKK 334


>gi|317496841|ref|ZP_07955171.1| MraW methylase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316895853|gb|EFV18005.1| MraW methylase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 312

 Score =  176 bits (445), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 101/311 (32%), Positives = 173/311 (55%), Gaps = 19/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+ VLL++ I  L+  P  + +D T G GG++   C+  S     I +D+D  A++   +
Sbjct: 5   HISVLLDETIEELHIKPDGIYVDGTLGGGGHAYHVCQKLSEKGRYIGIDQDADAIAASTK 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  +K++ ++ +  +  +   + D G   VDG++ DLGVSS Q+D  +RGF++++  PL
Sbjct: 65  RLESFKDKVTIVRDNYVNMPKVLHDLGIEHVDGILLDLGVSSFQLDDKERGFTYREDVPL 124

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     ++A D+VN+ +  +L  I+   GEEK A  IA  IV +R+ +P +TT  L 
Sbjct: 125 DMRMDQRQSLTARDIVNEYSEMELFHIIRDYGEEKFAKNIAKHIVNKRKESPIETTGQLI 184

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  +    +    HPA ++FQA+RI  N E++ L   + +    L  GG L +++FH
Sbjct: 185 EVIKSAIPMKVRAVGGHPAKKTFQAIRIECNRELDVLKDSIDAMIDLLNPGGRLCIITFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF------QSITKKVVVPTQEDVAFNRR 305
           SLEDR+VK+ F              P N    V       + +T+K ++P +E++ +N+R
Sbjct: 245 SLEDRIVKRAFKKNENPCTC-----PPNFPVCVCGNVSKGKQLTRKPIIPGEEELEYNKR 299

Query: 306 SRSAKLRAGMR 316
           ++S+KLR   R
Sbjct: 300 AKSSKLRVFER 310


>gi|157692188|ref|YP_001486650.1| S-adenosyl-methyltransferase MraW [Bacillus pumilus SAFR-032]
 gi|263446003|sp|A8FCX3|RSMH_BACP2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|157680946|gb|ABV62090.1| S-adenosyl-methyltransferase [Bacillus pumilus SAFR-032]
          Length = 310

 Score =  176 bits (445), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 111/304 (36%), Positives = 170/304 (55%), Gaps = 13/304 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN       +D T G  G+S       S    +I  D+D  A+   +E
Sbjct: 4   HETVLLKETVDGLNVKEDGTYVDCTLGGAGHSSYLLSQLSEKGTLIGFDQDDAALDHARE 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +   K      ++ F  L++ + ++G   VDGV+FDLGVSS Q+D  +RGFS+    PL
Sbjct: 64  KLAGSKANILFIKSNFRYLKERLNEQGITSVDGVIFDLGVSSPQLDTPERGFSYHHDAPL 123

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  S  +SA  VVN+   +DL RI    GEEK + +IA  I + R+ AP +TT +L 
Sbjct: 124 DMRMDQSAALSAKKVVNEWPFEDLVRIFYKYGEEKFSKQIARKIEEARKKAPIETTGELV 183

Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I++ +   ++    HPA R FQA+RI VN+E++   + L  A + L   G + V++FH
Sbjct: 184 DIIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALEQAIELLNPKGRISVITFH 243

Query: 252 SLEDRLVKKFFASRSGKVMAVRH---MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SLEDR+ K  F   S  +  + H   +IP    P + + IT+K +V +++++  N R+RS
Sbjct: 244 SLEDRICKSTFREMSS-LPELPHGLPVIPEGLEPKL-KLITRKPIVASEQELEHNNRARS 301

Query: 309 AKLR 312
           AKLR
Sbjct: 302 AKLR 305


>gi|145296128|ref|YP_001138949.1| S-adenosyl-methyltransferase MraW [Corynebacterium glutamicum R]
 gi|263447419|sp|A4QFN1|RSMH_CORGB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|140846048|dbj|BAF55047.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 337

 Score =  176 bits (445), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 113/326 (34%), Positives = 176/326 (53%), Gaps = 28/326 (8%)

Query: 20  HVPVLLEKVIALLNP-----APGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVS 72
           HVPV+ +++ AL+           VI+DAT GAGG++  F      + +I LDRD  A+ 
Sbjct: 12  HVPVMRDRMAALIAENVEALGENAVIVDATLGAGGHAEFFLNTFPKARLIGLDRDQNALR 71

Query: 73  CGQETMRDYKEQFSLFQATFSQLQ-----------DYVPDKGVDGVVFDLGVSSMQIDCG 121
             +  +  + E+F   Q  F  L+           D   + G+ G +FDLGVSSMQ+D  
Sbjct: 72  DARARLAPFGERFIGVQTRFDGLREVLESVEGDIIDLAREHGIAGALFDLGVSSMQLDQV 131

Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGF+++   PLDMRM  + GI+A+D++N  +  D+ RIL   G+E+ A +IA A++K R
Sbjct: 132 ERGFAYRTDAPLDMRMDATQGITAADILNTYSHGDIARILKTYGDERFAGKIASAVLKER 191

Query: 181 QSAPFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
           +  PF T+  L  L+   +   ++    HPA R+FQALR+ VNNE++ L   L     AL
Sbjct: 192 EKEPFTTSARLVELLYDAIPAATRRTGGHPAKRTFQALRVEVNNELDSLKNVLPQITDAL 251

Query: 240 KAGGLLIVVSFHSLEDRLVKKFF----ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295
             GG  + +S+ S ED+LVKKFF     S++   + V   +P  A    F+ +T+     
Sbjct: 252 NVGGRAVFMSYQSHEDKLVKKFFTDLTTSKTPPGLPVD--LPGTA--PQFKQVTRGAETA 307

Query: 296 TQEDVAFNRRSRSAKLRAGMRTVERS 321
           ++ ++  N R+   K+RA  R    S
Sbjct: 308 SEAEIEENPRAAPVKVRAIERIANNS 333


>gi|169632239|ref|YP_001705975.1| S-adenosylmethionine methyltransferase [Acinetobacter baumannii
           SDF]
 gi|263433355|sp|B0VPF9|RSMH_ACIBS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|169151031|emb|CAO99677.1| S-adenosylmethionine methyltransferase [Acinetobacter baumannii]
          Length = 307

 Score =  176 bits (445), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 121/311 (38%), Positives = 174/311 (55%), Gaps = 26/311 (8%)

Query: 20  HVPVLL-EKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDP----FAV 71
           H+ VLL E V +LL      V +DATFG GG++     K+  N  V A D+DP     A 
Sbjct: 3   HISVLLFETVESLLADRTTGVYIDATFGRGGHTHLLLSKLDENARVYAFDKDPQALEVAA 62

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQ 128
           +  QE  R     F++  A+F+ +++ + + GV   DG++ DLGVSS Q+D  +RGFSF 
Sbjct: 63  ALAQEDPR-----FTIIHASFADIKEKMQEIGVQSVDGIMADLGVSSPQLDQAERGFSFM 117

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           + GPLDMRM  S G++A++ + +   +DL  I+   GEE+ + RIA AI   +Q+    T
Sbjct: 118 QDGPLDMRMDNSKGLTAAEWLLEVEEEDLANIIYQYGEERHSRRIARAI---KQAGKLDT 174

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T  L+ ++ KT +       HPATR+FQA+RI +N E++++   L  A   LK  G L V
Sbjct: 175 TAQLAEIV-KTAHPKWEKHKHPATRTFQAIRIAINKELDDIEVFLPQAVDLLKPKGRLSV 233

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV--VVPTQEDVAFNRR 305
           +SFHSLEDRL+K+F    S         +P      V     KK+  V  ++E+V  N R
Sbjct: 234 ISFHSLEDRLIKQFIQKESTLTEDSGWGMPQQ---QVDTRRLKKISRVRVSEEEVKANPR 290

Query: 306 SRSAKLRAGMR 316
           SRSA LR   R
Sbjct: 291 SRSAWLRVAER 301


>gi|254880783|ref|ZP_05253493.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 4_3_47FAA]
 gi|319639793|ref|ZP_07994523.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 3_1_40A]
 gi|254833576|gb|EET13885.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 4_3_47FAA]
 gi|317388610|gb|EFV69459.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 3_1_40A]
          Length = 304

 Score =  176 bits (445), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 113/300 (37%), Positives = 170/300 (56%), Gaps = 16/300 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76
           HVPVLL + +  +N  PG + +DATFG GG+S+   S     +++ + D+D       + 
Sbjct: 9   HVPVLLNESVDGMNIQPGGIYVDATFGGGGHSKEILSRLDSTAHLYSFDQDE---DAEKN 65

Query: 77  TMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + D   +F+  ++ F  L +   Y   +GVD ++ DLGVSS   D  +RGFSF+  G L
Sbjct: 66  IVSD--SRFTFVRSNFRYLPNFLRYYGVEGVDAILADLGVSSHHFDDSERGFSFRFEGKL 123

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  +G++A+DVVN  + + L  I  + GE K + ++A AIVK R      T  D  
Sbjct: 124 DMRMNKRAGMTAADVVNTYDEERLANIFYLYGELKNSRKLASAIVKARGVKQIVTIGDFL 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I+   +F +        + FQALRI VN E+E L + L +A KALK GG L+V+++HS
Sbjct: 184 EVIKP--FFGREREKKELAKVFQALRIEVNQEMEALKEMLYAATKALKPGGRLVVITYHS 241

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK    + + +  A +    +   P  F+ +  KV+V   E+V  N RSRSAKLR
Sbjct: 242 LEDRMVKNIMKTGNIEGKAEQDFFGNVQTP--FKLVNNKVIVAGNEEVTRNPRSRSAKLR 299


>gi|269123556|ref|YP_003306133.1| S-adenosyl-methyltransferase MraW [Streptobacillus moniliformis DSM
           12112]
 gi|268314882|gb|ACZ01256.1| S-adenosyl-methyltransferase MraW [Streptobacillus moniliformis DSM
           12112]
          Length = 309

 Score =  176 bits (445), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 108/307 (35%), Positives = 177/307 (57%), Gaps = 14/307 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76
           H+PVL ++V+  +      + +D T G GG+S    S     S +IA+D+D  A+    E
Sbjct: 4   HLPVLYDEVLENIIDKKDLIYMDCTLGGGGHSEGILSNSTDNSKLIAIDQDENAIKYASE 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVP-----DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            ++ +  + S+F+  F  L D V      DK VD ++ D+GVSS Q+D   RGFS++K  
Sbjct: 64  RLKKFGNKVSIFKNNFENL-DIVAYLAGFDK-VDRILMDIGVSSKQLDDDKRGFSYRKEA 121

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM  S  +SA +V+N    +++  IL   GEE ++ RIA  IV+ R++   +TT +
Sbjct: 122 KLDMRMDESQKLSAYEVINNYKEEEIADILYKYGEEPKSRRIAKYIVEYRKNKSIETTIE 181

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ ++ K +   K+ + HPA R+FQA+RI+VN E+E L + L  + + L  GG L+V++F
Sbjct: 182 LADIVIKAI--GKSMKKHPAKRTFQAIRIYVNRELEVLEKALDKSIELLNPGGRLLVITF 239

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK+ F            + I    + +  + +T+K +V  ++++  N R+ SA
Sbjct: 240 HSLEDRIVKEKFRKYENPCTCPYDLPICKCGNKSKGKVLTRKPIVSKEKELEANNRAHSA 299

Query: 310 KLRAGMR 316
           KLR  ++
Sbjct: 300 KLRVFIK 306


>gi|282854266|ref|ZP_06263603.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes J139]
 gi|282583719|gb|EFB89099.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes J139]
          Length = 346

 Score =  175 bits (444), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 110/304 (36%), Positives = 165/304 (54%), Gaps = 11/304 (3%)

Query: 20  HVPVLLEKVIALLN---PAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCG 74
           HVPV+  +++ LL     +  +V +D T G GG++ +  +   +V  + +DRD  A++  
Sbjct: 23  HVPVMRARILDLLAVVLKSGRRVHVDGTLGMGGHAEAVLRRFPDVELVGIDRDQQALTMA 82

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +  +  + ++  L  A   +L + + D G   VD V+ DLG+SS QID  +RGFS+    
Sbjct: 83  EARLEPFADRVHLVHAVHDELPEVLDDLGLDYVDSVLLDLGLSSFQIDEVERGFSYSVDS 142

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM   SG +A+ ++N+++  DL R+L   GEEK A RI  AIV  R   P +T+  
Sbjct: 143 PLDMRMDQSSGRTAAQILNESDPGDLVRMLREYGEEKFADRIVRAIVTERDRQPIETSGR 202

Query: 191 LSSLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L  +I + +     +    HPA R+FQALRI VN E+E L   L  A   L  GG + V+
Sbjct: 203 LVEIITEAIPATVRRKRHSHPAKRTFQALRIAVNREMETLPAVLPRALNRLDVGGRIAVL 262

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           S+HSLEDR VK+ F             +   +  A F  +T+    P  ++VA N RS S
Sbjct: 263 SYHSLEDRPVKEAFRDACADTAPTGLPMVPESMAAKFNPVTRGAERPDADEVATNPRSAS 322

Query: 309 AKLR 312
           A+LR
Sbjct: 323 ARLR 326


>gi|25028617|ref|NP_738671.1| S-adenosyl-methyltransferase MraW [Corynebacterium efficiens
           YS-314]
 gi|259507675|ref|ZP_05750575.1| S-adenosyl-methyltransferase MraW [Corynebacterium efficiens
           YS-314]
 gi|30173070|sp|Q8FNT2|RSMH_COREF RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|23493903|dbj|BAC18871.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
 gi|259164722|gb|EEW49276.1| S-adenosyl-methyltransferase MraW [Corynebacterium efficiens
           YS-314]
          Length = 338

 Score =  175 bits (444), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 112/326 (34%), Positives = 178/326 (54%), Gaps = 28/326 (8%)

Query: 20  HVPVLLEKVIALL-----NPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVS 72
           HVPV+ +++ AL+           VI+DAT GAGG++  F  +   ++VI LDRD  A+ 
Sbjct: 12  HVPVMRDRMAALIADHVREMGDRAVIVDATLGAGGHAEHFLTVFPEAHVIGLDRDENALR 71

Query: 73  CGQETMRDYKEQFSLFQATFSQLQ-----------DYVPDKGVDGVVFDLGVSSMQIDCG 121
              E +  + ++F   +  F  L            D    +G+ G +FDLGVSSMQ+D  
Sbjct: 72  DAGERLARFGDRFLGVKTRFDGLSQVLATGEGDILDLARKEGISGALFDLGVSSMQLDQV 131

Query: 122 DRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGF+++   PLDMRM    GI+A+D++N  +  D+ R+L   G+E+ A +IA A++K R
Sbjct: 132 ERGFAYRTDAPLDMRMDPTQGITAADILNTYSHGDIARVLKTYGDERFAGKIASAVLKER 191

Query: 181 QSAPFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
           +  PF T+  L  L+  T+   ++    HPA R+FQALR+ VN E+E L+  L     AL
Sbjct: 192 EKEPFTTSARLVELLYDTIPAATRRTGGHPAKRTFQALRVEVNRELESLSNVLPQITDAL 251

Query: 240 KAGGLLIVVSFHSLEDRLVKKFF----ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295
             GG  + +S+ S ED+LVK+FF     S++   + V   +P  A    F+ +T+     
Sbjct: 252 NVGGRAVFMSYQSHEDKLVKRFFTELTTSKTPPGLPVD--LPGTA--PRFRQVTRGAETA 307

Query: 296 TQEDVAFNRRSRSAKLRAGMRTVERS 321
           ++ ++  N R+   K+RA  R  E +
Sbjct: 308 SEAEIEENPRAAPVKVRAIERIAEHT 333


>gi|323127869|gb|ADX25166.1| S-adenosyl-methyltransferase MraW [Streptococcus dysgalactiae
           subsp. equisimilis ATCC 12394]
          Length = 337

 Score =  175 bits (444), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 112/323 (34%), Positives = 176/323 (54%), Gaps = 17/323 (5%)

Query: 5   SCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NV 61
           + K M+   HH     V VLL + + +L+  P  + +DAT G  G+S       S   ++
Sbjct: 18  TIKVMTKEFHH-----VTVLLHETVDMLDIKPNGIYVDATLGGSGHSAYLLSKLSEQGHL 72

Query: 62  IALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSM 116
              D+D  A+   Q  ++ Y  K Q +  +  F  L+  +   GV   DG+++DLGVSS 
Sbjct: 73  YCFDQDQKAIDNAQLILKPYIDKGQVTFIKDNFRNLKARLEALGVTKIDGILYDLGVSSP 132

Query: 117 QIDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175
           Q+D  +RGFS+++  PLDMRM     ++A DVVN     DL +I    GE+K + +IA  
Sbjct: 133 QLDERERGFSYKQDAPLDMRMDRQAPLTAYDVVNTYPFNDLVKIFFKYGEDKFSKQIARK 192

Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRS 234
           I + R   P +TT +L+ LI+      +   + HPA + FQA+RI VN+E+    + ++ 
Sbjct: 193 IEQARAIKPIETTTELAELIKAAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQD 252

Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVV 293
           A + L   G + V++FHSLEDRL K+ F   S   V      IP +  P  F+ +++K +
Sbjct: 253 AMELLALDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPEDMKP-TFELVSRKPI 311

Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316
           +P+QE++A N R+ SAKLR   +
Sbjct: 312 LPSQEELAANNRAHSAKLRVAKK 334


>gi|307544543|ref|YP_003897022.1| S-adenosyl-methyltransferase MraW [Halomonas elongata DSM 2581]
 gi|307216567|emb|CBV41837.1| S-adenosyl-methyltransferase MraW [Halomonas elongata DSM 2581]
          Length = 318

 Score =  175 bits (444), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 121/313 (38%), Positives = 173/313 (55%), Gaps = 33/313 (10%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H  VLL+  +  L   P    LD TFG GG+SR+  +  S    ++A+DRDP A+   QE
Sbjct: 15  HASVLLDGAVETLVHDPSGRYLDGTFGRGGHSRAILERLSPQGRLLAIDRDPQAI---QE 71

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  +F+  +  F++L D+     +    DG++ D+GVSS Q+D  +RGFSF + GP
Sbjct: 72  AAAIEDARFAFERGDFARLGDFARAHDLHGKLDGILLDVGVSSPQLDDPERGFSFLRDGP 131

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM    G SA+  + +A+  ++ R+    GEE+ A R+A AIV RR    F  T DL
Sbjct: 132 LDMRMDPEHGESAAAWIARADEGEIARVFKTYGEERFARRLARAIVARRGERAFTRTADL 191

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + +I K  + +     HPATR+FQALRI VN E+E+L   L +A +AL  GG L+V+SFH
Sbjct: 192 AEVI-KAAHPAWEKGKHPATRAFQALRIQVNGELEQLDLALEAALEALAPGGHLVVISFH 250

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVV------PTQEDV 300
           SLEDR VK+F          +R  +  + H     P     I +++        PT E+V
Sbjct: 251 SLEDRRVKRF----------IRDHVRGDTHLPRGIPLRDDQIQRRLEALGKARRPTSEEV 300

Query: 301 AFNRRSRSAKLRA 313
             N R+RSA +RA
Sbjct: 301 EDNPRARSAVMRA 313


>gi|282897735|ref|ZP_06305734.1| methyltransferase [Raphidiopsis brookii D9]
 gi|281197414|gb|EFA72311.1| methyltransferase [Raphidiopsis brookii D9]
          Length = 305

 Score =  175 bits (444), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 113/301 (37%), Positives = 164/301 (54%), Gaps = 26/301 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H+PVL E++I  LN   G   LD T G GG+SR   +   N  V+A+D+D  AV   +  
Sbjct: 24  HIPVLGEELIRGLNIQAGGNYLDLTVGGGGHSRLILQAADNTKVMAVDQDLDAVIAAKTR 83

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
           + ++ ++       F       P    DG++ DLGVSS  +D  +RGFSF+ +  LDMRM
Sbjct: 84  LSEFGDRVDFLHTNFVNFP--FPPNTYDGILADLGVSSYHLDNPERGFSFRHTANLDMRM 141

Query: 138 SCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
           +    I+A+D+VN  + ++LT I    GEE+ + +IA  I++ R   PF TT  L+  I 
Sbjct: 142 NQQQSITAADIVNGWDEQELTHIFFEYGEERLSRKIARRIIENR---PFSTTTQLAESIS 198

Query: 197 KTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
             V    +  RIHPATR FQALR+ VN+E++ L   L  A  +L  GG + ++SFHSLED
Sbjct: 199 SCVPPKYRYGRIHPATRVFQALRLAVNDELQVLETLLHKAPPSLVPGGKIALISFHSLED 258

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           R+VK     R+  ++ V               +TKK +  T  ++  N RSRSAKLR   
Sbjct: 259 RIVKH--GLRNSDLLTV---------------MTKKPITATDPEIQHNPRSRSAKLRIAQ 301

Query: 316 R 316
           +
Sbjct: 302 K 302


>gi|19553366|ref|NP_601368.1| S-adenosyl-methyltransferase MraW [Corynebacterium glutamicum ATCC
           13032]
 gi|62391005|ref|YP_226407.1| S-adenosyl-methyltransferase MraW [Corynebacterium glutamicum ATCC
           13032]
 gi|24212026|sp|Q8NNM7|RSMH_CORGL RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|21324936|dbj|BAB99559.1| Predicted S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [Corynebacterium glutamicum
           ATCC 13032]
 gi|41326344|emb|CAF20506.1| S-adenosylmethionine-dependent methyltransferase involved in cell
           envelope biogenesis [Corynebacterium glutamicum ATCC
           13032]
          Length = 337

 Score =  175 bits (444), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 111/318 (34%), Positives = 174/318 (54%), Gaps = 28/318 (8%)

Query: 20  HVPVLLEKVIALLNP-----APGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVS 72
           HVPV+ +++ AL+           VI+DAT GAGG++  F      + +I LDRD  A+ 
Sbjct: 12  HVPVMRDRMAALIAEHVEALGENAVIVDATLGAGGHAEFFLNTFPKARLIGLDRDQNALR 71

Query: 73  CGQETMRDYKEQFSLFQATFSQLQ-----------DYVPDKGVDGVVFDLGVSSMQIDCG 121
             +  +  + E+F   Q  F  L+           D   + G+ G +FDLGVSSMQ+D  
Sbjct: 72  DARARLAPFGERFIGVQTRFDGLREVLESVEGDIIDLAREHGIAGALFDLGVSSMQLDQV 131

Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGF+++   PLDMRM  + GI+A+D++N  +  D+ RIL   G+E+ A +IA A++K R
Sbjct: 132 ERGFAYRTDAPLDMRMDATQGITAADILNTYSHGDIARILKTYGDERFAGKIASAVLKER 191

Query: 181 QSAPFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
           +  PF T+  L  L+   +   ++    HPA R+FQALR+ VNNE++ L   L     AL
Sbjct: 192 EKEPFTTSARLVELLYDAIPAATRRTGGHPAKRTFQALRVEVNNELDSLKNVLPQITDAL 251

Query: 240 KAGGLLIVVSFHSLEDRLVKKFF----ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295
             GG  + +S+ S ED+LVKKFF     S++   + V   +P  A    F+ +T+     
Sbjct: 252 NVGGRAVFMSYQSHEDKLVKKFFTDLTTSKTPPGLPVD--LPGTA--PQFKQVTRGAETA 307

Query: 296 TQEDVAFNRRSRSAKLRA 313
           ++ ++  N R+   K+RA
Sbjct: 308 SEAEIEENPRAAPVKVRA 325


>gi|239917869|ref|YP_002957427.1| S-adenosyl-methyltransferase MraW [Micrococcus luteus NCTC 2665]
 gi|281413637|ref|ZP_06245379.1| S-adenosyl-methyltransferase MraW [Micrococcus luteus NCTC 2665]
 gi|263456502|sp|C5CA38|RSMH_MICLC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|239839076|gb|ACS30873.1| S-adenosyl-methyltransferase MraW [Micrococcus luteus NCTC 2665]
          Length = 331

 Score =  175 bits (444), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 109/309 (35%), Positives = 173/309 (55%), Gaps = 15/309 (4%)

Query: 20  HVPVLLEKVIALLNPA------PGK--VILDATFGAGGYSRSFCKMGSN--VIALDRDPF 69
           H+PV+ ++V+ LL PA       G+  V +D T G GG++ +      +  VI +DRD  
Sbjct: 12  HLPVMRDRVVDLLAPAVQAALEAGRTPVAVDGTLGMGGHTEALLTRFPHLRVIGIDRDAH 71

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFS 126
           A +   E +    ++   F  T+ ++ + +   GV   D  ++DLGVSS Q+D  +RGF+
Sbjct: 72  AQAMAAERLGPLADRVIPFHGTYDRVPEAMAAAGVTKVDAALYDLGVSSYQLDDRERGFA 131

Query: 127 FQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           +    PLDMRM   +  SA+ +V + + ++L RI+   GEE+ A  IA AIV+ R  AP 
Sbjct: 132 YSYDAPLDMRMDDTAERSAATLVAELDEQELRRIIRRDGEERFAGPIARAIVRARAEAPI 191

Query: 186 QTTQDLSSLIQKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           +TT  L  +I+  V  +      HPA R+FQALRI VN E++ L   + +   AL  GG 
Sbjct: 192 ETTGRLVEVIRSAVPVAAGATGGHPAKRTFQALRIAVNEELDILDAAVPAILDALHVGGR 251

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           L+V+S+HSLEDR+ K+  ++ +         +    H  V + +T+    PT+E+++ NR
Sbjct: 252 LVVMSYHSLEDRITKRHLSAWATSTAPPGFPVVLEEHEPVVRVLTRGTEKPTEEEISENR 311

Query: 305 RSRSAKLRA 313
           R+ SAK+RA
Sbjct: 312 RASSAKVRA 320


>gi|262280350|ref|ZP_06058134.1| S-adenosylmethionine-dependent methyltransferase [Acinetobacter
           calcoaceticus RUH2202]
 gi|262258128|gb|EEY76862.1| S-adenosylmethionine-dependent methyltransferase [Acinetobacter
           calcoaceticus RUH2202]
          Length = 307

 Score =  175 bits (444), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 118/311 (37%), Positives = 176/311 (56%), Gaps = 18/311 (5%)

Query: 20  HVPVLLEKVI-ALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQ 75
           H+ VLL + I +LL      V +DATFG GG++R    K+  N  V A D+DP A+    
Sbjct: 3   HISVLLSETIESLLADRTTGVYIDATFGRGGHTRLLLSKLDENARVYAFDKDPQALEVAA 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            T+     +F++  A+F+ +++ + + GV   DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 63  -TLAQEDSRFTIIHASFADIKEKMQEIGVMSVDGIMADLGVSSPQLDQAERGFSFMQDGP 121

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G++A++ + +   + L  ++   GEE+ + RIA AI   + +   +TT  L
Sbjct: 122 LDMRMDNSKGLTAAEWLLKIEEEQLANVIYQYGEERYSRRIAKAI---KLAGKLETTAQL 178

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++ KT +       HPATR+FQA+RI +N E+E++   L  A   LK  G L V+SFH
Sbjct: 179 AEVV-KTAHPKWEKHKHPATRAFQAIRIAINKELEDIEVFLPQAVDLLKPEGRLSVISFH 237

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV--VVPTQEDVAFNRRSRSA 309
           SLEDRL+K+F    S         +P      V     KK+  V  ++E+V  N RSRSA
Sbjct: 238 SLEDRLIKQFIQKESTLAEDFGWGMPEQ---RVDTRRLKKISRVRASEEEVKANPRSRSA 294

Query: 310 KLRAGMRTVER 320
            LR   R  E+
Sbjct: 295 WLRVAERLEEK 305


>gi|255010082|ref|ZP_05282208.1| S-adenosyl-methyltransferase MraW [Bacteroides fragilis 3_1_12]
 gi|313147877|ref|ZP_07810070.1| S-adenosyl-methyltransferase mraW [Bacteroides fragilis 3_1_12]
 gi|313136644|gb|EFR54004.1| S-adenosyl-methyltransferase mraW [Bacteroides fragilis 3_1_12]
          Length = 304

 Score =  175 bits (444), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 109/300 (36%), Positives = 165/300 (55%), Gaps = 16/300 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HVPVLL++ +  +N  P    +D TFG GG+SR        G  ++  D+D       + 
Sbjct: 9   HVPVLLKESVDAMNITPDGTYVDVTFGGGGHSREILSRLGNGGRLLGFDQDE---DAERN 65

Query: 77  TMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + D    F+  ++ F  L +   Y   +GVD ++ DLGVSS   D  +RGFSF+  G L
Sbjct: 66  IVND--PHFTFVRSNFRYLHNFLRYHDIEGVDSILADLGVSSHHFDDSERGFSFRFDGKL 123

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  +GI+A+DVVN    + L  I  + GE K + ++A  IVK R     +T  +  
Sbjct: 124 DMRMNKRAGITAADVVNTYEEERLADIFYLYGELKNSRKLASVIVKARSGQKIETIGEFL 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +++    F +        + FQALRI VN E+E L + L +A +ALK GG L+V+++HS
Sbjct: 184 EVVKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLMAATEALKPGGRLVVITYHS 241

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK    + + +    +    +   P  F+ +  KV+VP +E++A N RSRSAKLR
Sbjct: 242 LEDRMVKNIMKTGNVEGKTTQDFFGNLQTP--FRLVNNKVIVPDEEEIARNPRSRSAKLR 299


>gi|295692684|ref|YP_003601294.1| s-adenosyl-l-methionine-dependent methyltransferase mraw
           [Lactobacillus crispatus ST1]
 gi|295030790|emb|CBL50269.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Lactobacillus crispatus ST1]
          Length = 315

 Score =  175 bits (444), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 114/312 (36%), Positives = 170/312 (54%), Gaps = 17/312 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77
           H  VLL + I  L P  G + +DATFG GG++R          ++  D+D +A+   +  
Sbjct: 5   HTSVLLHETIDNLKPKNGGLYVDATFGGGGHARYLLSKIDTGTLVGFDQDEYAIKSAKLN 64

Query: 78  MR-----DYKEQFSLFQATFSQLQ-DYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
                  D + +  L    FS L+ D V      G+DG+ +DLGVSS Q D  DRGFS++
Sbjct: 65  FANLLQPDSEPRLELVHDNFSNLEKDLVKLGYSDGIDGIYYDLGVSSPQFDQADRGFSYR 124

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
               LDMRM  S  + A  +VN  + K+L  IL   G+EK + +IAH IV+RR+  P  T
Sbjct: 125 YDARLDMRMDQSQDLDAYQLVNTLSQKELADILYQYGDEKFSRQIAHRIVERRREKPIAT 184

Query: 188 TQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T +L  +I+  +  +++    HPA +SFQALR+ VN+E++ L   L  A K L+ GG + 
Sbjct: 185 TFELVDVIKDAIPAYARRTGGHPAKKSFQALRVAVNHELDVLQASLEEAIKILRPGGRIS 244

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           V++F S ED++VK+ F   S +V   R M  IP    P + + +  K +V +  ++  N 
Sbjct: 245 VITFQSHEDKIVKRIFKKYS-EVEVPRGMPFIPDGMKPTL-RLVNHKPIVASTSELENNN 302

Query: 305 RSRSAKLRAGMR 316
           RS SAKLR   +
Sbjct: 303 RSHSAKLRVAEK 314


>gi|145220562|ref|YP_001131271.1| S-adenosyl-methyltransferase MraW [Prosthecochloris vibrioformis
           DSM 265]
 gi|262824996|sp|A4SH10|RSMH_PROVI RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|145206726|gb|ABP37769.1| S-adenosyl-methyltransferase MraW [Chlorobium phaeovibrioides DSM
           265]
          Length = 327

 Score =  175 bits (444), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 114/312 (36%), Positives = 170/312 (54%), Gaps = 21/312 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYS--------RSFCKMGSNVIALDRDPFAV 71
           H PVL  + +++L   PG + LD T G GG+S        RS    GS ++ +D+D  A+
Sbjct: 9   HEPVLAPESVSMLVRGPG-LYLDGTLGGGGHSLAILCELERSGWLEGSLLLGIDQDDEAL 67

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDY----VPDKGVD----GVVFDLGVSSMQIDCGDR 123
               E + DY+E     +  F  +          +G++    G++ DLGVSS Q+D   R
Sbjct: 68  QEAGERLADYREHAVALKGNFGNIAALSAREAGSRGMEPQASGILLDLGVSSHQLDVPLR 127

Query: 124 GFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR-Q 181
           GFS+ + GPLDMRM      +A+D++N A   +L  I    GEE  +  IA A+  RR +
Sbjct: 128 GFSYMQPGPLDMRMDSGATGTAADILNTAPEAELASIFFRYGEEPLSRVIARAVTTRRVE 187

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
             PF TT +L+ L+ ++V F +   +   +R FQALRI VN E+E L + L      LK 
Sbjct: 188 KGPFHTTDELADLV-RSVVFGRERVMKSLSRVFQALRIAVNQELEVLERVLGDGVMLLKP 246

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDV 300
           GG + V+S+HSLEDR+VK+FF+S +      + + +     PA   ++T K V    E+V
Sbjct: 247 GGRMAVISYHSLEDRMVKRFFSSLTTADWGPKGVGLREPVRPAAAIAVTGKPVRAGAEEV 306

Query: 301 AFNRRSRSAKLR 312
           A N R+RSAK+R
Sbjct: 307 ARNPRARSAKMR 318


>gi|325478632|gb|EGC81744.1| S-adenosyl-methyltransferase MraW [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 306

 Score =  175 bits (444), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 109/311 (35%), Positives = 168/311 (54%), Gaps = 22/311 (7%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
           +H+PV+  + I  LN     V LD T G GG+S+   +  S+   +IALD+D  A+   +
Sbjct: 4   EHIPVIATETIENLNIKSDGVYLDLTLGKGGHSKMILERLSDEGTLIALDQDKEAIEAAK 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E ++D+        + F ++ + + D G   +DG + D+GVSS QID  DRGFS+ K GP
Sbjct: 64  ENLKDFS-NVIFINSNFEKIDEVLRDLGFDYIDGALMDIGVSSYQIDNADRGFSYMKDGP 122

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+    ++A  +VN+ +  +L +I    GEEK +  IA  I+K R+     TT  L
Sbjct: 123 LDMRMNQENELTAEIIVNEYSQDELEKIFFEYGEEKFSKLIAKNIIKAREDYRIDTTFKL 182

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             ++ K++   K+N  HP  R FQALRI VN E++ L   +      L     L +++FH
Sbjct: 183 KDIVTKSI---KSNEAHPEKRVFQALRIEVNRELDVLKDTIDKVVDHLNKDERLAIITFH 239

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSN------AHPAVFQSITKKVVVPTQEDVAFNRR 305
           SLEDR+VK  F     K +A   + P         H A  + IT+K +  +++++  N R
Sbjct: 240 SLEDRIVKNKF-----KDLATDCICPPEFPVCVCNHKAKVKIITRKPITASKKELKENSR 294

Query: 306 SRSAKLRAGMR 316
           ++ AKLR   R
Sbjct: 295 AKPAKLRVCQR 305


>gi|260589610|ref|ZP_05855523.1| S-adenosyl-methyltransferase MraW [Blautia hansenii DSM 20583]
 gi|331083033|ref|ZP_08332152.1| ribosomal RNA small subunit methyltransferase H 2 [Lachnospiraceae
           bacterium 6_1_63FAA]
 gi|260539850|gb|EEX20419.1| S-adenosyl-methyltransferase MraW [Blautia hansenii DSM 20583]
 gi|330399770|gb|EGG79431.1| ribosomal RNA small subunit methyltransferase H 2 [Lachnospiraceae
           bacterium 6_1_63FAA]
          Length = 313

 Score =  175 bits (444), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 103/312 (33%), Positives = 173/312 (55%), Gaps = 27/312 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H  VLLE+ +  L   P  + +D T G GG+S + C+  S   ++I +D+D  A++    
Sbjct: 5   HQSVLLEETVGNLRVKPDGIYVDGTLGGGGHSYAICQQLSAKGSLIGIDQDEAAINAAGN 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++++KEQ ++ ++ +  ++  +   G   VDG+V DLGVSS Q+D  +RGF++++  PL
Sbjct: 65  RLQEFKEQVTIIRSNYCNMKRELQKIGITSVDGIVLDLGVSSYQLDNSERGFTYREDVPL 124

Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM      +A ++VN+ +  +L RI+   GE+K A  IA  I   RQ    +TT +L 
Sbjct: 125 DMRMDQRNPRTAKNIVNEYSENELYRIIRDYGEDKFAKNIAKHICMARQEKEIETTGELI 184

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I++ +    +    HPA ++FQA+RI +N E++ L   L    + L   G + +++FH
Sbjct: 185 EIIKRAIPMKMRAVGGHPAKKTFQAIRIELNQELDVLRNSLDDMIELLNDQGRICIITFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV----------FQSITKKVVVPTQEDVA 301
           SLEDR+VK  F          R+  P    P             + IT+K ++P++E++ 
Sbjct: 245 SLEDRIVKTIFK---------RNENPCTCPPGFPVCVCGNQSKGKVITRKPILPSEEELE 295

Query: 302 FNRRSRSAKLRA 313
            N+RS+SAKLR 
Sbjct: 296 MNKRSKSAKLRV 307


>gi|313114876|ref|ZP_07800375.1| S-adenosyl-methyltransferase MraW [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310622826|gb|EFQ06282.1| S-adenosyl-methyltransferase MraW [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 321

 Score =  175 bits (444), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 112/304 (36%), Positives = 168/304 (55%), Gaps = 12/304 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-----KMGSNVIALDRDPFAVSC 73
           +H+PVLL + +  L+  P    LD T G  G+SR        + G  +I+LD+DP AV  
Sbjct: 15  EHIPVLLNECLEGLSIDPAGTYLDGTAGGAGHSRQIALRLDAEKGGRLISLDQDPDAVQT 74

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKS 130
            +  +       ++ Q  F      +   G+D   G + DLGVSS Q+D   RGFS++  
Sbjct: 75  ARARLAGLPA--TVVQINFRYAGQALESLGIDKVNGALLDLGVSSHQLDDAARGFSYRAD 132

Query: 131 GPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            PLDMRMS  G +A+D+VN  + ++L RIL   GEE  A +IA  IV+ R+++P +TT  
Sbjct: 133 APLDMRMSQQGETAADLVNTESREELARILRDYGEEPFAWQIAGRIVEARENSPIETTLQ 192

Query: 191 LSSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ ++   +  ++  +  +P+ R+FQALRI VN+E++ L +GL +    L  GG L V++
Sbjct: 193 LADIVASAMPPAERRKNKNPSRRTFQALRIAVNHELDALEEGLDTIFDHLAPGGRLCVIT 252

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDRLVK  F   S          +      A  + IT+K +    +++  NRRSRS
Sbjct: 253 FHSLEDRLVKNKFRRWSTACTCPPEFPVCVCGGKAKAKLITRKPIEANSQELEENRRSRS 312

Query: 309 AKLR 312
           A LR
Sbjct: 313 AHLR 316


>gi|300726283|ref|ZP_07059736.1| S-adenosyl-methyltransferase MraW [Prevotella bryantii B14]
 gi|299776480|gb|EFI73037.1| S-adenosyl-methyltransferase MraW [Prevotella bryantii B14]
          Length = 318

 Score =  175 bits (444), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 113/311 (36%), Positives = 173/311 (55%), Gaps = 24/311 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDP-------F 69
           HVPVLLE+ +  LN  PG + +D TFG GG+S    S     +++ + D+D        +
Sbjct: 9   HVPVLLEQTVNGLNIQPGGIYIDVTFGGGGHSSKILSCLDSQAHLYSFDQDADAENNIYY 68

Query: 70  AVSCGQETMRDYK----EQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGD 122
           A +   E  +D++     +F+  ++ F  +++   Y     +DG++ DLGVSS   D  D
Sbjct: 69  AEAGSNE--KDHRFIDDPRFTFVRSNFRYIKNWMRYYHVDYIDGLLADLGVSSHHFDDKD 126

Query: 123 RGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF+   PLDMRM+  + ++A+D+VN      L  I  + GE K + +IA+A+V+ RQ
Sbjct: 127 RGFSFRFDSPLDMRMNKRADMTAADIVNNYPESQLADIFYLYGELKNSRKIANALVRYRQ 186

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
           +    TTQD     +    F +        R FQALRI VN+E++ L + L SA + L+ 
Sbjct: 187 NQKILTTQDFIKATEPL--FKREKEKKDMARLFQALRIEVNHEMDALKEMLNSATELLRP 244

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           GG L V+++HSLEDR+VK    S + +   V+     +  P  ++ I  KV++P QE+  
Sbjct: 245 GGRLSVITYHSLEDRIVKNVMKSGNPEGKIVKDFFGKSETP--YKLINNKVIIPDQEEQE 302

Query: 302 FNRRSRSAKLR 312
            N RSRSAKLR
Sbjct: 303 NNPRSRSAKLR 313


>gi|289704963|ref|ZP_06501378.1| S-adenosyl-methyltransferase MraW [Micrococcus luteus SK58]
 gi|289558299|gb|EFD51575.1| S-adenosyl-methyltransferase MraW [Micrococcus luteus SK58]
          Length = 349

 Score =  175 bits (444), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 109/309 (35%), Positives = 173/309 (55%), Gaps = 15/309 (4%)

Query: 20  HVPVLLEKVIALLNPA------PGK--VILDATFGAGGYSRSFCKMGSN--VIALDRDPF 69
           H+PV+ ++V+ LL PA       G+  V +D T G GG++ +      +  VI +DRD  
Sbjct: 30  HLPVMRDRVVDLLAPAVQAALEAGRTPVAVDGTLGMGGHTEALLTRFPHLRVIGIDRDVH 89

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFS 126
           A +   E +    ++   F  T+ ++ + +   GV   D  ++DLGVSS Q+D  +RGF+
Sbjct: 90  AQAMAAERLGPLADRLIPFHGTYDRVPEAMAAAGVTKVDAALYDLGVSSYQLDDRERGFA 149

Query: 127 FQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           +    PLDMRM   +  SA+ +V + + ++L RI+   GEE+ A  IA AIV+ R  AP 
Sbjct: 150 YSYDAPLDMRMDDTAERSAATLVAELDEQELRRIIRRDGEERFAGPIARAIVRARDEAPI 209

Query: 186 QTTQDLSSLIQKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           +TT  L  +I+  V  +      HPA R+FQALRI VN E++ L   + +   AL  GG 
Sbjct: 210 ETTGRLVEVIRSAVPVAAGATGGHPAKRTFQALRIAVNEELDILDAAVPAILDALHVGGR 269

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           L+V+S+HSLEDR+ K+  ++ +         +    H  V + +T+    PT+E+++ NR
Sbjct: 270 LVVMSYHSLEDRITKRHLSAWATSTAPPGFPVVLEEHEPVVRVLTRGTEKPTEEEISENR 329

Query: 305 RSRSAKLRA 313
           R+ SAK+RA
Sbjct: 330 RASSAKVRA 338


>gi|292669650|ref|ZP_06603076.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Selenomonas noxia ATCC 43541]
 gi|292648447|gb|EFF66419.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Selenomonas noxia ATCC 43541]
          Length = 310

 Score =  175 bits (444), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 117/304 (38%), Positives = 162/304 (53%), Gaps = 14/304 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           HV VL E+ +  LN  P    +D T G  G++       S    +I +D+D  A++  QE
Sbjct: 5   HVSVLPEETLNALNITPNGTYVDCTLGGAGHAGRIAARLSPEGRLIGIDQDEAAIAAAQE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + D   Q +L +  F  L   +   GVD   GV+FDLG+SS QID  +RGFS+ +  PL
Sbjct: 65  RLADAACQVTLVRDNFRNLSAILAGAGVDSTDGVLFDLGISSPQIDTAERGFSYMQDAPL 124

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM   +G SA  VVN+    +L  I    GEE+ A RIA  I + R++ P +TT  L 
Sbjct: 125 DMRMDRRAGRSARSVVNEYTAAELMEIFYNYGEERWAKRIAAFIEEERKAHPIETTGQLV 184

Query: 193 SLIQKTVYFSKNNRI---HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           ++I + V   K  R    HPA R FQA+RI VN E+  L   L +A +AL+ GG L V++
Sbjct: 185 AVIDRAV--PKKTRAKGGHPAKRVFQAIRIEVNEELTILEGALTAAVRALRPGGRLAVIT 242

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VKK     +   +   H  +    H    + I K  +    E  A N R++S
Sbjct: 243 FHSLEDRIVKKTLKRFAQGCICPPHTPVCVCGHTPELRLIGKPQMASAVE-CAENPRAKS 301

Query: 309 AKLR 312
           AKLR
Sbjct: 302 AKLR 305


>gi|303228441|ref|ZP_07315274.1| S-adenosyl-methyltransferase MraW [Veillonella atypica
           ACS-134-V-Col7a]
 gi|303230798|ref|ZP_07317545.1| S-adenosyl-methyltransferase MraW [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302514558|gb|EFL56553.1| S-adenosyl-methyltransferase MraW [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302516943|gb|EFL58852.1| S-adenosyl-methyltransferase MraW [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 310

 Score =  175 bits (444), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 109/306 (35%), Positives = 162/306 (52%), Gaps = 8/306 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
           +HV VLL + +  +   P  + +D T G  G++ +  +  S+   +I LD+D  A++  +
Sbjct: 4   NHVSVLLNETVDSVVTNPDGIYVDCTLGGAGHAHAVGERLSSQGMIIGLDQDEDALAVAR 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + + D   Q       FS L+  + ++G   VDG +FDLGVSS Q+D  +RGFS+   GP
Sbjct: 64  QRLSDLTCQVMTIPTNFSDLKHALEEQGIYEVDGFIFDLGVSSYQLDTPERGFSYMNDGP 123

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM     I+A  VVN+     L +I+   GEE+ A RI   IV  R      TT +L
Sbjct: 124 LDMRMDKEAPITAEIVVNEYESDKLLQIIRDYGEERWAKRIVEFIVAARNEKRITTTGEL 183

Query: 192 SSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
            S+I+K +   ++ +  HPA R+FQA+RI VN E+  L      A   LK  G + V++F
Sbjct: 184 VSIIKKAIPAKARQDGPHPAKRTFQAIRIEVNRELAILHDSFVDAVSMLKPKGRIGVITF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDR+ K+ F   S   +    +     H         K + P+  +V  N RSRSAK
Sbjct: 244 HSLEDRITKQTFKELSTACICPPELPVCVCHHKAVLKAKNKAIEPSAGEVEMNPRSRSAK 303

Query: 311 LRAGMR 316
           LR G++
Sbjct: 304 LRVGIK 309


>gi|237749177|ref|ZP_04579657.1| S-adenosyl-methyltransferase MraW [Oxalobacter formigenes OXCC13]
 gi|229380539|gb|EEO30630.1| S-adenosyl-methyltransferase MraW [Oxalobacter formigenes OXCC13]
          Length = 319

 Score =  175 bits (444), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 117/310 (37%), Positives = 179/310 (57%), Gaps = 18/310 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKV---ILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSC 73
           H  VLL++ +  L     +V    +D TFG GG+SR    ++G    +IA D+DP AVS 
Sbjct: 6   HDSVLLKEAVDALAIEGDRVNGIFIDGTFGRGGHSRLILERLGGEGRLIAFDKDPEAVSV 65

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130
             +       +F +   +F+ L + + +KG+   DG++ DLG+SS Q++   RGFSF+  
Sbjct: 66  AGKIT---DPRFEIVHKSFADLGEVLEEKGIEMIDGILLDLGISSPQVEDAARGFSFRLE 122

Query: 131 GPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
           GPLDMRM S  G+SA++ +     + +  ++   GEE+ A +IA AIV  R   P  +T+
Sbjct: 123 GPLDMRMDSTRGLSAAEWLAVETEEKIAEVIHQYGEERFAFQIAKAIVACRTIKPIDSTK 182

Query: 190 DLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L+ ++   V  F K    +PATR+FQA+RIF+N E+EEL  GL++A + L+  G + V+
Sbjct: 183 QLAEIVAGAVKTFEKGK--NPATRTFQAIRIFINRELEELEIGLQAAWQHLRLNGRMSVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           SFHSLEDR+VKKF + ++   M  R + I +   P     +  K   P++ +V+ N RSR
Sbjct: 241 SFHSLEDRIVKKFLSGKAKVDMPDRRLPIRAIDLPQPEMKLLGK-QKPSKAEVSKNARSR 299

Query: 308 SAKLRAGMRT 317
           SA LR   R 
Sbjct: 300 SAILRIATRV 309


>gi|58337113|ref|YP_193698.1| S-adenosyl-methyltransferase MraW [Lactobacillus acidophilus NCFM]
 gi|227903687|ref|ZP_04021492.1| S-adenosyl-methyltransferase [Lactobacillus acidophilus ATCC 4796]
 gi|68565411|sp|Q5FKV7|RSMH_LACAC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|58254430|gb|AAV42667.1| cell division protein [Lactobacillus acidophilus NCFM]
 gi|227868574|gb|EEJ75995.1| S-adenosyl-methyltransferase [Lactobacillus acidophilus ATCC 4796]
          Length = 315

 Score =  175 bits (443), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 110/312 (35%), Positives = 172/312 (55%), Gaps = 17/312 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77
           H  VLL + I  L P    + +DATFG GG+++          +I  D+D +A+   +  
Sbjct: 5   HTSVLLHETIDNLKPKNDGLYVDATFGGGGHAKYLLSKIDTGTLIGFDQDEYAIKSAELN 64

Query: 78  MR-----DYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
                  D + +  L    FS L++ +       G+DG+ +DLGVSS Q D  DRGFS++
Sbjct: 65  FANLLKPDSEPKLQLVHDNFSNLEENLVKLGYTDGIDGIYYDLGVSSPQFDQADRGFSYR 124

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
            +  LDMRM+    + A  +VN  + K+L  IL   G+EK + +IAH IV++R+  P  T
Sbjct: 125 YNARLDMRMNQDQDLDAYQLVNTLSQKELADILYQYGDEKFSRQIAHKIVEKRKEKPIVT 184

Query: 188 TQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T +L  +I+  +  +++    HPA +SFQALR+ VN+E++ L   L  A K L+ GG + 
Sbjct: 185 TFELVDIIKDAIPAYARRTGGHPAKKSFQALRVAVNHELDVLQASLEEAIKVLRPGGRIS 244

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           V++F S ED++VKK F   S +V   R M  IP +  P + + + +K +V +  ++  N 
Sbjct: 245 VITFQSHEDKIVKKIFKKYS-EVEVPRGMPFIPDDMKPTL-KLVNRKPIVASDSELENNN 302

Query: 305 RSRSAKLRAGMR 316
           RS SAKLR   +
Sbjct: 303 RSHSAKLRVAEK 314


>gi|224436850|ref|ZP_03657839.1| S-adenosyl-methyltransferase MraW [Helicobacter cinaedi CCUG 18818]
 gi|313143328|ref|ZP_07805521.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Helicobacter cinaedi CCUG 18818]
 gi|313128359|gb|EFR45976.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Helicobacter cinaedi CCUG 18818]
          Length = 311

 Score =  175 bits (443), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 114/305 (37%), Positives = 173/305 (56%), Gaps = 16/305 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           H  VL  +V+  LN   G VI D T G GG++ S  +   N+   A DRD  A+S  ++ 
Sbjct: 3   HFSVLKNEVLEALNLESGAVI-DCTLGYGGHTLSLLEQNPNIHIYAFDRDESALSLAKQR 61

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +  Y  +  +    F+   D + ++    V G++ D+GVSSMQ+D   RGFSF  S  LD
Sbjct: 62  LAPYASRLHIQHCAFANALDSLGNEQLARVRGILADIGVSSMQLDDKHRGFSF-TSNNLD 120

Query: 135 MRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM S   ++A+ V+N  +   L  I  I GE +Q+ ++   IV  R+  PF++  +LS 
Sbjct: 121 MRMDSTQNLNAAKVINTYSAMRLEEIFRIYGEIRQSKKLTELIVSTREKKPFESALELSE 180

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL----LIVVS 249
           LI++  +F +   IHPAT +FQALRI VN E+E+L   L+S E A   G L    + ++S
Sbjct: 181 LIER--HFPRIGGIHPATLAFQALRIEVNGELEQLQTLLQSIESAFINGVLYDCKVAIIS 238

Query: 250 FHSLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           FHSLEDR++K+ F   ++S K            + A+   +TKK ++P++ ++  N+RSR
Sbjct: 239 FHSLEDRIIKQTFKQWAKSCKCGENALKCECGNNNALGSILTKKPILPSETEIIQNKRSR 298

Query: 308 SAKLR 312
           SAKLR
Sbjct: 299 SAKLR 303


>gi|227824963|ref|ZP_03989795.1| S-adenosyl-methyltransferase mraW [Acidaminococcus sp. D21]
 gi|226905462|gb|EEH91380.1| S-adenosyl-methyltransferase mraW [Acidaminococcus sp. D21]
          Length = 311

 Score =  175 bits (443), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 107/311 (34%), Positives = 173/311 (55%), Gaps = 21/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VLL + +  +   P  + +D T G  G+S +  +       +I +D+D  A+    +
Sbjct: 7   HKSVLLRESVDWIVTDPKGIYVDCTLGGAGHSHAIAEELDPEGLLIGIDQDEDAIMAASK 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + D   +  +  + F  L   +     + VDG+ FDLGVSS Q+D  +RGFS+   GPL
Sbjct: 67  RLEDAACKVKIVHSNFRNLGTILEGLNLQEVDGIFFDLGVSSYQLDTPERGFSYMHDGPL 126

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM   G ++A+DVVN    +DL  ++   GEE+ + RIA  IV++R+  P +TT DL 
Sbjct: 127 DMRMDQEGKLTAADVVNTYKEEDLADLIYKYGEERWSRRIAQFIVEKRKEKPLRTTSDLV 186

Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           S+I+  +   ++ +  HPA R+FQA+RI VN+E++ L   + +A K LK GG + V++FH
Sbjct: 187 SVIKAAIPKKARQDGPHPAKRTFQAIRIEVNDELKILDSTMETAVKHLKKGGRIGVITFH 246

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSN------AHPAVFQSITKKVVVPTQEDVAFNRR 305
           SLEDR++K+ F     K MA   + P         H    + +  K  +P++ ++  N R
Sbjct: 247 SLEDRIIKQSF-----KRMAKGCICPPELPVCVCGHKPELKKL--KEFIPSETELEDNPR 299

Query: 306 SRSAKLRAGMR 316
           +RSA+LR  ++
Sbjct: 300 ARSARLRGAIK 310


>gi|262831569|sp|A0PTJ6|RSMH_MYCUA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 345

 Score =  175 bits (443), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 116/315 (36%), Positives = 174/315 (55%), Gaps = 18/315 (5%)

Query: 20  HVPVLLEKVIALLNPAPGK--------VILDATFGAGGYSRSFCKM--GSNVIALDRDPF 69
           HVPVL ++ + LL PA  +        V++DAT GAGG++  F     G  +I LDRDP 
Sbjct: 15  HVPVLAQRCVELLRPALTRHHADGSEAVLVDATIGAGGHAERFLTELPGLRLIGLDRDPS 74

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSSMQIDCGDR 123
           A+   +  +  + ++ +L    +  L   + + G      +DG +FDLGVSSMQ+D  +R
Sbjct: 75  ALEIVRTRLARFTDRVTLVHTRYDGLASALTELGYGAAQSIDGALFDLGVSSMQLDQAER 134

Query: 124 GFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GF++ K  PLDMRM+  S +S +D++N  +   L  IL   GEE+ A RIA  I++RR  
Sbjct: 135 GFAYSKDAPLDMRMNPQSALSGADIINTYDEAALADILHRYGEERFARRIAARIIRRRAD 194

Query: 183 APFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            PF TT +L +L+ + +   ++    HPA R+FQALRI VN+E+  L   + +A  AL  
Sbjct: 195 RPFTTTAELVALLYEAIPAAARRTGGHPAKRTFQALRIAVNDELGSLRSAVPAAMDALAV 254

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           GG ++V+++ SLEDR+VK+ FA        V   +    H   F+S+T         +V 
Sbjct: 255 GGRIVVMAYQSLEDRIVKRVFADAVASRTPVDLPVELPGHGPRFRSLTHGAERADAAEVE 314

Query: 302 FNRRSRSAKLRAGMR 316
            N RS   +LRA  R
Sbjct: 315 HNPRSAPVRLRALQR 329


>gi|326693783|ref|ZP_08230788.1| 16S rRNA m(4)C1402 methyltranserfase [Leuconostoc argentinum KCTC
           3773]
          Length = 313

 Score =  175 bits (443), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 112/312 (35%), Positives = 173/312 (55%), Gaps = 18/312 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76
           +HV VLL + +ALL+  P  + +DAT G GG++    K      + + D+D  A+   Q 
Sbjct: 5   EHVTVLLHEAVALLDIKPDGLYVDATLGGGGHTGEILKQLTTGTLYSFDQDDTAI---QY 61

Query: 77  TMRDYKEQFS-----LFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQ 128
             + Y ++ +     L    F  L+  + ++GV   DG+V+DLGVSS+Q D G RGFS+ 
Sbjct: 62  NTKQYADEIAAGKLVLIHQNFRTLKSALAERGVTAVDGIVYDLGVSSVQFDDGQRGFSYN 121

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
               LDMRM     ++A  +VN     DL RIL   GE++   +IA  I + R++ P  T
Sbjct: 122 YDAELDMRMDQRQTLTAKTIVNDWPFNDLLRILSRYGEDRFPKQIARKIEQHRENGPINT 181

Query: 188 TQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T +L  +I++ +   ++    HPA R+FQALRI VN+E+  L   L  A   L   G + 
Sbjct: 182 TFELVDIIKEAIPAPARRKGGHPAKRTFQALRIAVNDELGALEDSLTQAIDLLAPDGRIS 241

Query: 247 VVSFHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           V++F SLEDRLVK+ F  ++   ++ A   ++P     A +  +T+K ++P Q+++A N 
Sbjct: 242 VITFQSLEDRLVKQMFREKTTAPELPAGLPVLPGQFE-ADYTLLTRKPILPGQDEMADNH 300

Query: 305 RSRSAKLRAGMR 316
           RS SAKLR   R
Sbjct: 301 RSESAKLRGIAR 312


>gi|163854995|ref|YP_001629293.1| S-adenosyl-methyltransferase MraW [Bordetella petrii DSM 12804]
 gi|263445873|sp|A9I4S5|RSMH_BORPD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|163258723|emb|CAP41022.1| methyltransferase [Bordetella petrii]
          Length = 363

 Score =  175 bits (443), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 114/307 (37%), Positives = 182/307 (59%), Gaps = 15/307 (4%)

Query: 39  VILDATFGAGGYSRSFCK-MG--SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95
           V +D TFG GG+SR   + +G  + ++  D+DP A++   E +     + ++    F+ +
Sbjct: 46  VFVDGTFGRGGHSRELLRRLGPEARLVVFDKDPQAIAVANE-LAAGDARVTVVHGGFAAM 104

Query: 96  QDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQA 151
           ++ +  +G+   DGV+ DLGVSS Q+D   RGFSF + GPLDMRM  + G + +D + QA
Sbjct: 105 REELAARGIESIDGVMLDLGVSSPQLDDAGRGFSFMREGPLDMRMDTTRGPTVADWLAQA 164

Query: 152 NVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPAT 211
           +V ++  ++   GEE+ A ++A AI  RR + P +TT +L+  +   V   +  + HPAT
Sbjct: 165 SVDEMREVIADYGEERFAFQVAKAIAARRATRPLRTTLELAECVASAVRTREKGQ-HPAT 223

Query: 212 RSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMA 271
           R+FQALRI++N E+EEL++ L SA + L  GG L V+SFHSLEDR+VK+  A+ +   +A
Sbjct: 224 RTFQALRIYINRELEELSRALASALELLAPGGRLAVISFHSLEDRMVKQCIAAAARPAVA 283

Query: 272 VRHMI--PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDDSFVH 329
              +    S     +++S+ +  V    E++A N R+RSA LR   RT E    D +   
Sbjct: 284 HARLPLRESELPQPLYRSLGR--VQADDEEIAGNARARSAVLRVAERTTEPLGADGAAAF 341

Query: 330 LP--RLP 334
           +P  R+P
Sbjct: 342 VPAMRVP 348


>gi|167765841|ref|ZP_02437894.1| hypothetical protein CLOSS21_00332 [Clostridium sp. SS2/1]
 gi|167712558|gb|EDS23137.1| hypothetical protein CLOSS21_00332 [Clostridium sp. SS2/1]
 gi|291559197|emb|CBL37997.1| S-adenosyl-methyltransferase MraW [butyrate-producing bacterium
           SSC/2]
          Length = 312

 Score =  175 bits (443), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 101/311 (32%), Positives = 173/311 (55%), Gaps = 19/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+ VLL++ I  L+  P  + +D T G GG++   C+  S     I +D+D  A++   +
Sbjct: 5   HISVLLDETIEELHIKPDGIYVDGTLGGGGHAYHVCQKLSEKGRYIGIDQDADAIAASTK 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  +K++ ++ +  +  +   + D G   VDG++ DLGVSS Q+D  +RGF++++  PL
Sbjct: 65  RLEPFKDKVTIVRDNYVNMPKVLHDLGIEHVDGILLDLGVSSFQLDEKERGFTYREDVPL 124

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     ++A D+VN+ +  +L  I+   GEEK A  IA  IV +R+ +P +TT  L 
Sbjct: 125 DMRMDQRQSLTARDIVNEYSEMELFHIIRDYGEEKFAKNIAKHIVNKRKESPIETTGQLI 184

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  +    +    HPA ++FQA+RI  N E++ L   + +    L  GG L +++FH
Sbjct: 185 EVIKGAIPMKVRAVGGHPAKKTFQAIRIECNRELDVLKDSIDAMIDLLNPGGRLCIITFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF------QSITKKVVVPTQEDVAFNRR 305
           SLEDR+VK+ F              P N    V       + +T+K ++P +E++ +N+R
Sbjct: 245 SLEDRIVKRAFKKNENPCTC-----PPNFPVCVCGNVSKGKQLTRKPIIPGEEELEYNKR 299

Query: 306 SRSAKLRAGMR 316
           ++S+KLR   R
Sbjct: 300 AKSSKLRVFER 310


>gi|325684346|gb|EGD26515.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Lactobacillus delbrueckii subsp. lactis DSM 20072]
          Length = 314

 Score =  175 bits (443), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 111/307 (36%), Positives = 171/307 (55%), Gaps = 16/307 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77
           H  VLL + I  L P  G   +DATFG GG++R         N+I  D+D +A+   Q  
Sbjct: 5   HTSVLLHETIDNLAPQSGGTYVDATFGGGGHARYLLSKLDKGNLIGFDQDQYAIDTAQSN 64

Query: 78  M-----RDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
                  D + +  L    FS L++ +      G+DG+ +DLGVSS Q+D  +RGFS++ 
Sbjct: 65  FAAFLKEDSQPRLQLVHNNFSHLKEELAKLGISGIDGIYYDLGVSSPQLDQAERGFSYRF 124

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
              LDMRM  S    A  +VNQ + K L  +L   G+EK + +IA  IV+RR+  P +TT
Sbjct: 125 DARLDMRMDQSQDFDAYQLVNQYDQKQLADVLYRYGDEKFSRQIARKIVERRRVKPIETT 184

Query: 189 QDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L  +I++ +   ++ +  HPA +SFQA+R+ VN+E++ L   L  A   L  GG + V
Sbjct: 185 FELVEIIKEAIPAAARRSGGHPAKKSFQAIRVEVNHELDVLRASLEEAISLLNPGGRISV 244

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           ++F S ED++VK+ F   S +V   R M  +P    P + + + +K +  ++E++A N R
Sbjct: 245 ITFQSSEDKIVKQTFKKYS-EVEIPRGMPVVPEGIKPTL-RLVNRKPITASEEELAENNR 302

Query: 306 SRSAKLR 312
           S SAKLR
Sbjct: 303 SHSAKLR 309


>gi|308807246|ref|XP_003080934.1| MRAW_PARUW S-adenosyl-methyltransferase mraW ref|YP_007310.1|
           probable S-ade (ISS) [Ostreococcus tauri]
 gi|116059395|emb|CAL55102.1| MRAW_PARUW S-adenosyl-methyltransferase mraW ref|YP_007310.1|
           probable S-ade (ISS) [Ostreococcus tauri]
          Length = 370

 Score =  175 bits (443), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 112/318 (35%), Positives = 172/318 (54%), Gaps = 27/318 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCGQE 76
           H  V+++++++       +  +D T GAGG++++  +    +   I  D D  A +  + 
Sbjct: 50  HYSVMMDEILSAFRDVELRAHVDGTLGAGGHAQAMIRTHPEMEHFIGFDVDASAHAIARP 109

Query: 77  TMRDYKE----------QFSLFQATFSQLQDY------VPDKGVDGVVFDLGVSSMQIDC 120
            +   +E          + SL +A F Q+         +   G+DGVV DLGVSSM +D 
Sbjct: 110 RLERAREDARGGEAGALKVSLVEANFRQMAQALEAMGGIHRAGIDGVVLDLGVSSMHLDR 169

Query: 121 GDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFSF   GPLDMRM  S   SA ++VN    +++ RIL   GEE+    +A  I +R
Sbjct: 170 AERGFSFMNDGPLDMRMGPSAKTSAEEIVNAWPEEEIGRILRDYGEERHWRLLAKRICER 229

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
           R +    TT++L   +       K   IHPATR+FQ +RI VN+E+  +   + +A +AL
Sbjct: 230 RAAKAITTTRELVDALGNVP--GKWGSIHPATRTFQGIRIAVNDELGAVEDVIPAAIEAL 287

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAV-----RHMIPSNAHPAVFQSITKKVVV 294
           + GG L ++SFHSLED +VKK F   +G+   +     R+M      P V + IT+K +V
Sbjct: 288 RPGGRLAIISFHSLEDSIVKKKFRFYAGQAEPLGETFNRYMDQPEKPPKVVKLITRKPLV 347

Query: 295 PTQEDVAFNRRSRSAKLR 312
           P+ ++V  N RSRSAKLR
Sbjct: 348 PSVDEVDENVRSRSAKLR 365


>gi|260550822|ref|ZP_05825029.1| S-adenosylmethionine-dependent methyltransferase [Acinetobacter sp.
           RUH2624]
 gi|260406132|gb|EEW99617.1| S-adenosylmethionine-dependent methyltransferase [Acinetobacter sp.
           RUH2624]
          Length = 307

 Score =  175 bits (443), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 122/311 (39%), Positives = 175/311 (56%), Gaps = 26/311 (8%)

Query: 20  HVPVLL-EKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAV---- 71
           H+ VLL E V +LL      V +DATFG GG++R    K+  N  V A D+DP A+    
Sbjct: 3   HISVLLFETVESLLADRTTGVYIDATFGRGGHTRLLLSKLDENARVYAFDKDPQALEVAG 62

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQ 128
           +  QE  R     F++  A+F+ +++ + + GV   DG++ DLGVSS Q+D  +RGFSF 
Sbjct: 63  ALAQEDPR-----FTIIHASFADIKEKMQEIGVQSVDGIMADLGVSSPQLDQAERGFSFM 117

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           + GPLDMRM  S G++A++ + +   + L  I+   GEE+ + RIA AI   +Q+    T
Sbjct: 118 QDGPLDMRMDNSKGLTAAEWLLEIEEEQLANIIYQYGEERYSRRIAKAI---KQAGKLDT 174

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T  L+ L+ KT +       HPATR+FQA+RI +N E++++   L  A   LK  G L V
Sbjct: 175 TAQLAELV-KTAHPKWEKHKHPATRTFQAIRIAINKELDDIEVFLPQAVDLLKPKGRLSV 233

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV--VVPTQEDVAFNRR 305
           +SFHSLEDRL+K+F    S         +P      V     KK+  V  ++E+V  N R
Sbjct: 234 ISFHSLEDRLIKQFIQKESTLAEDSGWGMPQQ---QVDTRRLKKISRVRASEEEVKANPR 290

Query: 306 SRSAKLRAGMR 316
           SRSA LR   R
Sbjct: 291 SRSAWLRVAER 301


>gi|260102637|ref|ZP_05752874.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Lactobacillus helveticus DSM 20075]
 gi|260083561|gb|EEW67681.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Lactobacillus helveticus DSM 20075]
          Length = 330

 Score =  175 bits (443), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 116/313 (37%), Positives = 173/313 (55%), Gaps = 19/313 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76
           H  VLL + I  L P  G + +DATFG GG+++   S  + G+ ++  D+D +A+   + 
Sbjct: 20  HTSVLLHETIDNLKPKNGGLYVDATFGGGGHAKYLLSKIETGT-LVGFDQDEYAIKSAEL 78

Query: 77  TMRDY-----KEQFSLFQATFSQL-QDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSF 127
              D      + +  L    FS L QD V      G+DG+ +DLGVSS Q D  DRGFS+
Sbjct: 79  NFADLLQPDSEPRLKLVHDNFSNLEQDLVKLGYSDGIDGIYYDLGVSSPQFDQADRGFSY 138

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           + +  LDMRM  S    A  +VN  + K+L  IL   G+EK + +IAH IV+RR+  P  
Sbjct: 139 RYNARLDMRMDQSQDTDAYQLVNTLSQKELADILYQYGDEKFSRQIAHRIVERRKDKPIV 198

Query: 187 TTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           TT +L  +I++ +  +++    HPA +SFQALR+ VN+E++ L   L  A + L+ GG +
Sbjct: 199 TTFELVDIIKEAIPAYARRTGGHPAKKSFQALRVAVNHELDVLQASLEEAIRILRPGGRI 258

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            V++F S ED++VKK F   S +V   R M  +P +  P +     K +   T E +  N
Sbjct: 259 SVITFQSHEDKIVKKIFKKYS-EVEVPRGMPFVPDDMKPTLRLENRKPITASTSE-LENN 316

Query: 304 RRSRSAKLRAGMR 316
            RS SAKLR   +
Sbjct: 317 NRSHSAKLRVAEK 329


>gi|225028107|ref|ZP_03717299.1| hypothetical protein EUBHAL_02377 [Eubacterium hallii DSM 3353]
 gi|224954577|gb|EEG35786.1| hypothetical protein EUBHAL_02377 [Eubacterium hallii DSM 3353]
          Length = 315

 Score =  175 bits (443), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 108/316 (34%), Positives = 176/316 (55%), Gaps = 25/316 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76
           H  ++LE+VI  L   P  + +D T G  G+S    K +G +  +I +D+D  A+    +
Sbjct: 5   HKSIMLEEVIESLAIKPNGIYVDGTLGGAGHSSEIVKRLGEDGRLIGIDQDGEAIEAATK 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++ YK++ ++ ++ ++Q+++ + D G   VDG++ DLGVSS Q+D  +RGF++++  PL
Sbjct: 65  RLKPYKDKVTIVRSNYAQMKEVLRDLGIPKVDGILLDLGVSSYQLDNAERGFTYREDVPL 124

Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM      +A D+VN  +  +L  I+   GE+K A  IA  IV+ RQ  P +TT  L 
Sbjct: 125 DMRMDQRQTKTAKDIVNDYSEMELYHIIRNYGEDKFAKNIAKHIVQARQKTPIETTGQLI 184

Query: 193 SLIQKTVYFSKNNRI---HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            +I+  +   K  R    HPA ++FQA+RI +N+E++ L   L      L   G + +++
Sbjct: 185 EVIKAAI--PKKVRATGGHPAKKTFQAIRIELNHELDVLKNNLEDMIDLLNDEGRIAIIT 242

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF-------QSITKKVVVPTQEDVAF 302
           FHSLEDR+VK  F +      + R  I     P          + IT+K +VP +E++  
Sbjct: 243 FHSLEDRIVKNIFRT------SERPCICPPEFPVCVCGRVSKGKVITRKPIVPGKEELEE 296

Query: 303 NRRSRSAKLRAGMRTV 318
           N RS+SAKLR   R +
Sbjct: 297 NSRSKSAKLRVFERRI 312


>gi|21672883|ref|NP_660948.1| hypothetical protein CT0042 [Chlorobium tepidum TLS]
 gi|25090698|sp|Q8KGC6|RSMH_CHLTE RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|21645935|gb|AAM71290.1| conserved hypothetical protein [Chlorobium tepidum TLS]
          Length = 318

 Score =  175 bits (443), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 114/313 (36%), Positives = 174/313 (55%), Gaps = 26/313 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM------GSNVIALDRDPFAVSC 73
           H PVL  + ++LL   PG + +D T G GG+S    +        S ++ +D+D  A+  
Sbjct: 7   HEPVLARESVSLLVTLPG-IYIDGTLGGGGHSLQLLRHLQTLNGDSLLVGIDQDTHALEA 65

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD--KG------VDGVVFDLGVSSMQIDCGDRGF 125
             + + ++ ++  L +  F  +++ V    +G      V G + DLGVSS QID  +RGF
Sbjct: 66  AGKKLGEFGDRRRLVRGNFGMVKELVEPMMRGAGNGLPVMGFLLDLGVSSFQIDTPERGF 125

Query: 126 SFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           S+ K GPLDMRM   G ++A+D+VN      L ++    GEE    RIA AIV  R SAP
Sbjct: 126 SYLKDGPLDMRMDPDGPLTAADIVNGYEEAALAKLFFRYGEEPLGGRIARAIVSARSSAP 185

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
             TT +L+ +I+      K+  I   +R +QALRI VN+E+  L Q L    + L +GG 
Sbjct: 186 LTTTGELAEVIRAACP-RKDLAIKTLSRIYQALRIEVNDELGVLEQALEDGFELLSSGGR 244

Query: 245 LIVVSFHSLEDRLVKKFFASRSG-----KVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
             V+S+HSLEDR+VK+FFA+++      K +A+R  +     PA    + +K +  T E+
Sbjct: 245 FAVISYHSLEDRIVKRFFAAKTSADWGPKGLALREPL----KPAEAVLVVRKPLEATAEE 300

Query: 300 VAFNRRSRSAKLR 312
           ++ N RSRSA+LR
Sbjct: 301 ISRNPRSRSARLR 313


>gi|192361777|ref|YP_001983393.1| S-adenosyl-methyltransferase MraW [Cellvibrio japonicus Ueda107]
 gi|263445770|sp|B3PCM8|RSMH_CELJU RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|190687942|gb|ACE85620.1| S-adenosyl-methyltransferase MraW [Cellvibrio japonicus Ueda107]
          Length = 309

 Score =  175 bits (443), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 111/301 (36%), Positives = 169/301 (56%), Gaps = 10/301 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           HV VLL + +  L   P    +D TFG GG+S    +  ++   ++A+D+D  A++  +E
Sbjct: 6   HVTVLLGEAVEALVSNPEGTYIDGTFGRGGHSALILQHLASEGRLLAIDKDLAAIATARE 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  +F++   +F+ L++   ++G    V G++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 66  KF-ATDARFAIAHDSFASLKNLAAERGLVGRVQGILLDLGVSSPQLDEAERGFSFMQDGP 124

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G SA++ VN A+  ++  +L   GEE+ A R+A AI+  RQ  PF  T  L
Sbjct: 125 LDMRMDQTRGPSAAEWVNTASEDEIAWVLREYGEERFAKRMARAIIAERQKRPFVRTGHL 184

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + +I+      +  + HPATR+FQA+RI VN E+E+L   L  A   L  GG L+V+SFH
Sbjct: 185 AEVIKAANPAWEKGK-HPATRAFQAIRIQVNRELEDLEAVLAQAVDVLAPGGRLVVISFH 243

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDRLVK+F   +       + +    A          K +  + ++V  N RSRSA +
Sbjct: 244 SLEDRLVKRFIRQQEQGDPVPKGLPLREAQLNKTMRSLGKAMKASDQEVEANVRSRSAVM 303

Query: 312 R 312
           R
Sbjct: 304 R 304


>gi|163790543|ref|ZP_02184972.1| S-adenosyl-methyltransferase MraW [Carnobacterium sp. AT7]
 gi|159874146|gb|EDP68221.1| S-adenosyl-methyltransferase MraW [Carnobacterium sp. AT7]
          Length = 318

 Score =  175 bits (443), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 110/309 (35%), Positives = 174/309 (56%), Gaps = 13/309 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVS 72
           T  +H  VLL + +  L+ +P  + +D T G  G+S    S      ++ A D+D  A+ 
Sbjct: 2   TAFNHETVLLRETVDGLSLSPEGIYVDCTLGGAGHSEYLLSQLNEKGHLYAFDQDDRALE 61

Query: 73  CGQETMRDYKEQ--FSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSF 127
             +  + +Y E+   +  +A F  ++D + + G   VDG+++DLGVSS Q+D  +RGFS+
Sbjct: 62  NAKIRLAEYVEKGMVTFIKANFRYIKDELANLGIKEVDGILYDLGVSSPQLDEAERGFSY 121

Query: 128 QKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
            +  PLDMRM     ++A +V+N+ +  DL RI    GEEK + +IA  I   R+    +
Sbjct: 122 HQDAPLDMRMDTDAPLTAKEVINEWSYHDLIRIFYRYGEEKFSKQIARKIEAAREIKLIE 181

Query: 187 TTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           TT +L  LI+  +   ++    HPA R FQA+RI VN+E+  +   L  A + L  GG +
Sbjct: 182 TTSELVELIKAGIPAPARRKGGHPAKRVFQAVRIAVNDELSSVEDSLEQAIELLAIGGRI 241

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            V+SFHSLEDR+VK  F   S      R +  +P    P + + IT+K ++P+++++  N
Sbjct: 242 SVISFHSLEDRIVKSIFKDHSKGPELPRGLPVVPDGFLPEL-KLITRKPILPSEQELEVN 300

Query: 304 RRSRSAKLR 312
            RSRSAKLR
Sbjct: 301 NRSRSAKLR 309


>gi|294506454|ref|YP_003570512.1| S-adenosyl-methyltransferase mraW [Salinibacter ruber M8]
 gi|294342782|emb|CBH23560.1| S-adenosyl-methyltransferase mraW [Salinibacter ruber M8]
          Length = 336

 Score =  175 bits (443), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 115/324 (35%), Positives = 176/324 (54%), Gaps = 22/324 (6%)

Query: 20  HVPVLLEKVIA-LLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
           H PVL   V A L+  A G+ + DAT G GG++R+   +      V+ +DRDP A+   +
Sbjct: 24  HAPVLSHDVQARLVTDASGRYV-DATLGGGGHARALLDVLDPDGVVLGIDRDPEALETAR 82

Query: 76  ETMRDYKE--QFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           + + D +E  +F     TF  L+D +  +    +DG++ DLGVSS QID  +RGFSF+  
Sbjct: 83  DRLADEREAGRFWAVHGTFGNLRDVLAAEDLIPIDGLLLDLGVSSHQIDVPERGFSFRDE 142

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
           GPLDMRM    G++A  +VN    +DL  +L   GEE +A +IA A+   R   P  TT+
Sbjct: 143 GPLDMRMDPQRGLTAQQIVNGWGERDLRDVLREYGEESRAGQIARALCDAR---PLDTTR 199

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            L+ +++  V     + +   TR FQALRI VN E++EL Q L  A + ++ GG +  +S
Sbjct: 200 ALAEVVEDCV--PPPDTVKTLTRVFQALRIAVNAELDELEQALEQATEVVRTGGRIAAIS 257

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           +HSLEDR VK++    + +    R +  +   P  +    +  +   + +V  N R+RSA
Sbjct: 258 YHSLEDRRVKRYLRYGNFEGEPRRDLYGTLVAP--WAETPRGPIEAGESEVEANPRARSA 315

Query: 310 KLRAGMRTVERSIEDDSFVHLPRL 333
            L    R  ER  +D++   LP L
Sbjct: 316 HL----RVAERRDDDEAGAPLPPL 335


>gi|257125535|ref|YP_003163649.1| S-adenosyl-methyltransferase MraW [Leptotrichia buccalis C-1013-b]
 gi|257049474|gb|ACV38658.1| S-adenosyl-methyltransferase MraW [Leptotrichia buccalis C-1013-b]
          Length = 308

 Score =  175 bits (443), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 109/306 (35%), Positives = 173/306 (56%), Gaps = 10/306 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQE 76
           H PVL ++V+  +      V +D T G GG++    +     S V+A+D+D  A+   ++
Sbjct: 4   HKPVLFDEVMDNIITDKDAVYVDCTLGGGGHTEGILENSSKNSKVVAIDQDVQAIEFAKK 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  Y  +  +FQ  F  +   V   G   VD ++ D+GVSS Q+D   RGFS++    L
Sbjct: 64  RLEKYANKLQIFQDNFRNIDTAVYLAGFEKVDRILMDIGVSSNQLDNAKRGFSYRFEARL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  +  ISA +V+N  + K+L  I+   GEE ++ +IA  IV+ R+    +TT +L+
Sbjct: 124 DMRMDSNLKISAYEVINNFSEKELADIIYKYGEEPKSRKIAKKIVEYRKIKAIETTTELA 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            ++ K++   K+ + HPA R+FQA+RIFVN E+E L++ L  A K L   G L+V++FHS
Sbjct: 184 DIVIKSI--GKSMKRHPAKRTFQAIRIFVNKELEILSETLDKAVKLLGKNGKLLVITFHS 241

Query: 253 LEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK+ F            + I      ++ + ITKK +V  + ++A N R+ SAKL
Sbjct: 242 LEDRIVKEKFREYENPCTCPPDIPICVCGKQSLGKVITKKPIVAKELELAENNRAHSAKL 301

Query: 312 RAGMRT 317
           R   R+
Sbjct: 302 RIFERS 307


>gi|73662901|ref|YP_301682.1| S-adenosyl-methyltransferase MraW [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
 gi|88909221|sp|Q49WW1|RSMH_STAS1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|72495416|dbj|BAE18737.1| putative methyltransferase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 311

 Score =  175 bits (443), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 106/305 (34%), Positives = 168/305 (55%), Gaps = 11/305 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQE 76
           HV V+L++ I  LN     V +D T G  G++     ++G    +IA+D+D  A+   +E
Sbjct: 4   HVSVMLKETIDYLNIKEDGVYVDCTLGGAGHALYLLNQLGDEGRLIAIDQDTTAIENAKE 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++++  + +     F ++ + + D   + VDG+ +DLGVSS Q+D  +RGFS+     L
Sbjct: 64  VLKEHLHKVTFVHNNFRKITEILNDLNIEKVDGIYYDLGVSSPQLDVPERGFSYHHDAKL 123

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     +SA +VVN+   + L RI    GEEK + +IA  I + R+  P +TT +L 
Sbjct: 124 DMRMDQTQSLSAFEVVNEWEFEKLVRIFHRYGEEKFSKQIARRIEQNREQKPIETTLELV 183

Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I++ +   ++    HPA R FQA+RI VN+E+      L  A  A+K  G + V++FH
Sbjct: 184 DVIKEGIPAKARRKGGHPAKRIFQAIRIAVNDELSAFEDSLEQAIDAVKMDGRISVITFH 243

Query: 252 SLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDRL K+ F          R +  IP    P + + + +K ++ T ED+  N R+RSA
Sbjct: 244 SLEDRLCKQMFQEYEKGPDVPRGLPVIPEAYTPKL-KRVNRKPIIATDEDLEENNRARSA 302

Query: 310 KLRAG 314
           KLR  
Sbjct: 303 KLRVA 307


>gi|282859045|ref|ZP_06268181.1| S-adenosyl-methyltransferase MraW [Prevotella bivia JCVIHMP010]
 gi|282588213|gb|EFB93382.1| S-adenosyl-methyltransferase MraW [Prevotella bivia JCVIHMP010]
          Length = 319

 Score =  175 bits (443), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 112/304 (36%), Positives = 174/304 (57%), Gaps = 15/304 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYS---RSFCKMGSNVIALDRDPFA---VSC 73
           H+PVLL + I  LN   G + +D TFG GG+S    S   +G ++ + D+D  A   ++ 
Sbjct: 9   HIPVLLNESIEGLNIHTGGIYVDVTFGGGGHSGEILSRLPVGCHLYSFDQDLDAEQNLNH 68

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQ-K 129
             E  ++  ++F+  ++ F  L++++   GV   DG++ DLGVSS   D   RGFSF+ +
Sbjct: 69  LTEKSKELNDKFTFVRSNFRYLKNWMRYYGVEKIDGLLADLGVSSHHFDDETRGFSFRFE 128

Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM+ +   +AS+++N+    DL  +  + GE KQ+ RIA AIVK R +   +TT
Sbjct: 129 EAPLDMRMNKNAHKTASNILNEYEEDDLANLFYLYGELKQSRRIASAIVKARTNQTIKTT 188

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            D   +++    F +        + FQALRI VN+E+E L + L SA + L  GG L V+
Sbjct: 189 TDFLKIVEPL--FIRAREKKDMAKLFQALRIEVNHEMEALKEMLASATELLSPGGRLSVI 246

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           ++HSLEDR+VK F  + + +    +        P  F+ +  KV+V T+E++  N RSRS
Sbjct: 247 TYHSLEDRIVKNFMKAGNAEGKVTQDFFGRIETP--FKLVNNKVIVATEEELEKNPRSRS 304

Query: 309 AKLR 312
           AKLR
Sbjct: 305 AKLR 308


>gi|161507311|ref|YP_001577265.1| cell division protein MraW [Lactobacillus helveticus DPC 4571]
 gi|263458154|sp|A8YUN6|RSMH_LACH4 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|160348300|gb|ABX26974.1| Cell division protein MraW [Lactobacillus helveticus DPC 4571]
          Length = 315

 Score =  174 bits (442), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 116/313 (37%), Positives = 173/313 (55%), Gaps = 19/313 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76
           H  VLL + I  L P  G + +DATFG GG+++   S  + G+ ++  D+D +A+   + 
Sbjct: 5   HTSVLLHETIDNLKPKNGGLYVDATFGGGGHAKYLLSKIETGT-LVGFDQDEYAIKSAEL 63

Query: 77  TMRDY-----KEQFSLFQATFSQL-QDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSF 127
              D      + +  L    FS L QD V      G+DG+ +DLGVSS Q D  DRGFS+
Sbjct: 64  NFADLLQPDSEPRLKLVHDNFSNLEQDLVKLGYSDGIDGIYYDLGVSSPQFDQADRGFSY 123

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           + +  LDMRM  S    A  +VN  + K+L  IL   G+EK + +IAH IV+RR+  P  
Sbjct: 124 RYNARLDMRMDQSQDTDAYQLVNTLSQKELADILYQYGDEKFSRQIAHRIVERRKDKPIV 183

Query: 187 TTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           TT +L  +I++ +  +++    HPA +SFQALR+ VN+E++ L   L  A + L+ GG +
Sbjct: 184 TTFELVDIIKEAIPAYARRTGGHPAKKSFQALRVAVNHELDVLQASLEEAIRILRPGGRI 243

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            V++F S ED++VKK F   S +V   R M  +P +  P +     K +   T E +  N
Sbjct: 244 SVITFQSHEDKIVKKIFKKYS-EVEVPRGMPFVPDDMKPTLRLENRKPITASTSE-LENN 301

Query: 304 RRSRSAKLRAGMR 316
            RS SAKLR   +
Sbjct: 302 NRSHSAKLRVAEK 314


>gi|301165427|emb|CBW24998.1| putative S-adenosyl-methyltransferase [Bacteriovorax marinus SJ]
          Length = 325

 Score =  174 bits (442), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 114/320 (35%), Positives = 175/320 (54%), Gaps = 35/320 (10%)

Query: 20  HVPVLLEKVIALLNPAPGKV----ILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSC 73
           H  VL ++V+ +L     ++      D TFGAGG++ +  +   NV   ++D+DP A+  
Sbjct: 6   HYSVLNKEVVDILMEDSEQLQNIKFADMTFGAGGHTFALAESAKNVSVYSVDQDPDALKN 65

Query: 74  GQETMRDY--KEQFSLFQATFSQLQDYV----PDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
           G+E + +    E+  L    F Q  +++     +   +G+V DLGVSS   D GDRGFSF
Sbjct: 66  GKENINELGLSERVFLHDMNFEQFPEFIRSSDSEMKFNGIVADLGVSSHHFDEGDRGFSF 125

Query: 128 QKSGPLDMRMSCSGI---SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           +   PLDMRM        +A+D+VN  + +DL +I    GEEK   RI  +I++ R+SAP
Sbjct: 126 RFDAPLDMRMDVDNDELETAADIVNNYSKEDLEKIFFTYGEEKFTHRIVKSILEHRESAP 185

Query: 185 FQTTQDLSSLI----QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
            +TT+ L  +I     K + F K   I+PAT+ FQALRI VN E++ L   +    + L+
Sbjct: 186 IETTKQLEKIIIDCYPKKLQFGK---INPATKCFQALRIKVNKELDVLENVIPGLLELLE 242

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300
             G L +++FHSLEDR+VK  F        AV+  +P       ++   KK ++P+  ++
Sbjct: 243 INGRLAIITFHSLEDRIVKNLFKD------AVQSDVP-------YELYNKKPILPSHGEL 289

Query: 301 AFNRRSRSAKLRAGMRTVER 320
             N RSRSAKLR   +  E+
Sbjct: 290 EENPRSRSAKLRVITKINEK 309


>gi|15618336|ref|NP_224621.1| S-adenosyl-methyltransferase MraW [Chlamydophila pneumoniae CWL029]
 gi|15835954|ref|NP_300478.1| S-adenosyl-methyltransferase MraW [Chlamydophila pneumoniae J138]
 gi|16752618|ref|NP_444882.1| S-adenosyl-methyltransferase MraW [Chlamydophila pneumoniae AR39]
 gi|33241770|ref|NP_876711.1| S-adenosyl-methyltransferase MraW [Chlamydophila pneumoniae TW-183]
 gi|20139310|sp|Q9Z8C2|RSMH_CHLPN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|4376702|gb|AAD18565.1| SAM-Dependent Methytransferase [Chlamydophila pneumoniae CWL029]
 gi|7189261|gb|AAF38187.1| conserved hypothetical protein [Chlamydophila pneumoniae AR39]
 gi|8978793|dbj|BAA98629.1| SAM-dependent methytransferase [Chlamydophila pneumoniae J138]
 gi|33236279|gb|AAP98368.1| predicted S-adenosylmethionine-dependent methyltransferase
           [Chlamydophila pneumoniae TW-183]
 gi|269303297|gb|ACZ33397.1| S-adenosyl-methyltransferase MraW [Chlamydophila pneumoniae LPCoLN]
          Length = 297

 Score =  174 bits (442), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 117/303 (38%), Positives = 166/303 (54%), Gaps = 28/303 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALD---RDPFAVSCGQE 76
           H+PVL+E+ +AL    P +   D T GAGG++ +F +   ++   D   RD  A++  ++
Sbjct: 6   HIPVLVEECLALFAQRPPQTFRDVTLGAGGHAYAFLEAYPSLTCYDGSDRDLQALAIAEK 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ-KSGPLDM 135
            +  ++++ S   A+F  L +    +  DGV+ DLGVSSMQ+D   RGFSFQ +   LDM
Sbjct: 66  RLETFQDRVSFSHASFEDLANQPTPRLYDGVLADLGVSSMQLDTLSRGFSFQGEKEELDM 125

Query: 136 RM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL-SS 193
           RM     +SASDV+N    ++L RI    GEE Q    A A+V  R+     + QD+  +
Sbjct: 126 RMDQTQELSASDVLNSLKEEELGRIFREYGEEPQWKSAAKAVVHFRKHKKILSIQDVKEA 185

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           L+    ++  + +IHP T  FQALR++VN E  +L   L SA   L   G L+++SF S 
Sbjct: 186 LLGVFPHYRFHRKIHPLTLIFQALRVYVNGEDRQLKSLLTSAISWLAPQGRLVIISFCSS 245

Query: 254 EDRLVKKFF----ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           EDR VK FF    AS  GKV                  ITKKV+ PT ++V  N RSRSA
Sbjct: 246 EDRPVKWFFKEAEASGLGKV------------------ITKKVIQPTYQEVRRNPRSRSA 287

Query: 310 KLR 312
           KLR
Sbjct: 288 KLR 290


>gi|126663227|ref|ZP_01734225.1| S-adenosyl-methyltransferase MraW [Flavobacteria bacterium BAL38]
 gi|126624885|gb|EAZ95575.1| S-adenosyl-methyltransferase MraW [Flavobacteria bacterium BAL38]
          Length = 298

 Score =  174 bits (442), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 115/300 (38%), Positives = 175/300 (58%), Gaps = 17/300 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H PVLL++ +  LN  P  V +D TFG GG+SR    ++G N  + A D+D  A+     
Sbjct: 4   HNPVLLKETVDGLNIRPDGVYVDVTFGGGGHSREIMSRLGENGKLFAFDQDLDALKNAI- 62

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
               Y E+F+L    F  ++ ++   G   VDG++ DLGVSS Q D  +RGFS +    L
Sbjct: 63  ----YDERFTLINENFRFIKRFLRFHGIKQVDGILADLGVSSHQFDVAERGFSTRFDAEL 118

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  G ISA  VVN+ + ++++R+L   GE K A  +A+ IV  R+    + +  L 
Sbjct: 119 DMRMNQKGDISAYHVVNEYDEQEISRVLFNYGELKNARAMANVIVTARKDKEIRNSDQLK 178

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            ++ K +   K N+I    + +QA+RI VN E+E L + L  + + LK GG L V+S+HS
Sbjct: 179 QVLAKFLPGHKANKI--LAQIYQAIRIEVNQEMEVLKEFLEQSLEILKPGGRLSVISYHS 236

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDRLVK+F  +   +    R    +   P  F++I +K++VP++E++A N R+RSAKLR
Sbjct: 237 LEDRLVKRFVKNGMFEGEPERDFFGNFEVP--FKTI-EKLIVPSEEEIAINNRARSAKLR 293


>gi|282902029|ref|ZP_06309927.1| methyltransferase [Cylindrospermopsis raciborskii CS-505]
 gi|281193116|gb|EFA68115.1| methyltransferase [Cylindrospermopsis raciborskii CS-505]
          Length = 299

 Score =  174 bits (442), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 111/301 (36%), Positives = 165/301 (54%), Gaps = 26/301 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H+PVL E++I  L    G   LD T G GG+SR   +   N  V+A+D+D  A+   +  
Sbjct: 18  HIPVLGEELIRGLTIQAGGNYLDLTVGGGGHSRLILQAADNTKVMAVDQDLDALKAAKIN 77

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
           + ++ ++       F+      P    DG++ DLGVSS  +D   RGFSF+ +  LDMRM
Sbjct: 78  LSEFGDRVDFLHTNFANFP--FPPNTYDGILADLGVSSYHLDNPVRGFSFRNTANLDMRM 135

Query: 138 SCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
           +    ++A+D+VN  N ++LT I    GEE+ + +IA  I++ R   PF TT +L+  I 
Sbjct: 136 NQQQSLTAADIVNGWNEQELTHIFFHYGEERLSRKIARRIIENR---PFSTTTELAESIS 192

Query: 197 KTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
             V    +  RIHPATR FQALR+ VN+E++ L   L  A  +L  GG + ++SFHSLED
Sbjct: 193 SCVPPKYRYGRIHPATRVFQALRLAVNDELQVLETLLHKAPPSLVPGGKIALISFHSLED 252

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           R+VK     R+  ++ V               +TKK +  T+ ++  N RSRSAKLR   
Sbjct: 253 RIVKH--GLRNSDLLTV---------------MTKKPITATESEIQHNPRSRSAKLRIAQ 295

Query: 316 R 316
           +
Sbjct: 296 K 296


>gi|118618804|ref|YP_907136.1| S-adenosyl-methyltransferase MraW [Mycobacterium ulcerans Agy99]
 gi|118570914|gb|ABL05665.1| methyltransferase [Mycobacterium ulcerans Agy99]
          Length = 395

 Score =  174 bits (442), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 116/315 (36%), Positives = 174/315 (55%), Gaps = 18/315 (5%)

Query: 20  HVPVLLEKVIALLNPAPGK--------VILDATFGAGGYSRSFCKM--GSNVIALDRDPF 69
           HVPVL ++ + LL PA  +        V++DAT GAGG++  F     G  +I LDRDP 
Sbjct: 65  HVPVLAQRCVELLRPALTRHHADGSEAVLVDATIGAGGHAERFLTELPGLRLIGLDRDPS 124

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSSMQIDCGDR 123
           A+   +  +  + ++ +L    +  L   + + G      +DG +FDLGVSSMQ+D  +R
Sbjct: 125 ALEIVRTRLARFTDRVTLVHTRYDGLASALTELGYGAAQSIDGALFDLGVSSMQLDQAER 184

Query: 124 GFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GF++ K  PLDMRM+  S +S +D++N  +   L  IL   GEE+ A RIA  I++RR  
Sbjct: 185 GFAYSKDAPLDMRMNPQSALSGADIINTYDEAALADILHRYGEERFARRIAARIIRRRAD 244

Query: 183 APFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            PF TT +L +L+ + +   ++    HPA R+FQALRI VN+E+  L   + +A  AL  
Sbjct: 245 RPFTTTAELVALLYEAIPAAARRTGGHPAKRTFQALRIAVNDELGSLRSAVPAAMDALAV 304

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           GG ++V+++ SLEDR+VK+ FA        V   +    H   F+S+T         +V 
Sbjct: 305 GGRIVVMAYQSLEDRIVKRVFADAVASRTPVDLPVELPGHGPRFRSLTHGAERADAAEVE 364

Query: 302 FNRRSRSAKLRAGMR 316
            N RS   +LRA  R
Sbjct: 365 HNPRSAPVRLRALQR 379


>gi|168333718|ref|ZP_02691971.1| S-adenosyl-methyltransferase MraW [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 311

 Score =  174 bits (442), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 109/311 (35%), Positives = 169/311 (54%), Gaps = 25/311 (8%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
           +H+ VLL + I  LN     + +D T G  G++   C+       ++ +D+D  A++  +
Sbjct: 4   NHISVLLNECIEGLNIKTNGIYVDGTLGGAGHATEICRHLNSEGTLVGIDQDAIAIATAE 63

Query: 76  ETMRDYKEQFSLFQATFSQ----LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
             + +   +  + +  F+     L++   DK +DG++ DLGVSS Q+D  +RGFS+ +  
Sbjct: 64  ARLAEAANRVLVIKXNFANVDAVLEELEIDK-IDGMLLDLGVSSYQLDEAERGFSYMRDA 122

Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM+     SA DVVN     +L  ++   GEEK A RIA  IV+ R S+   TT +
Sbjct: 123 KLDMRMNQDAKFSAFDVVNSYTEDELAVVIKNFGEEKWARRIAKFIVEARASSSIDTTYE 182

Query: 191 LSSLIQKTVYFSKNNRI---HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           L  +I+K +   K  R+   HPA R+FQA+RI VN EI+ +A  ++     L  GG L +
Sbjct: 183 LVEIIKKAI--PKAARLEGGHPAKRTFQAIRIEVNKEIDIIAPAIKEIVAHLNVGGRLAI 240

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV------FQSITKKVVVPTQEDVA 301
           ++FHSLEDR+VK  F              PSN    V       + ITKK ++P+++++ 
Sbjct: 241 ITFHSLEDRIVKHTFRELENPCTC-----PSNFPICVCNKKSQVKVITKKPILPSEQELE 295

Query: 302 FNRRSRSAKLR 312
            N RS+SAKLR
Sbjct: 296 NNSRSKSAKLR 306


>gi|257468236|ref|ZP_05632332.1| methyltransferase [Fusobacterium ulcerans ATCC 49185]
 gi|317062518|ref|ZP_07927003.1| S-adenosyl-methyltransferase mraW [Fusobacterium ulcerans ATCC
           49185]
 gi|313688194|gb|EFS25029.1| S-adenosyl-methyltransferase mraW [Fusobacterium ulcerans ATCC
           49185]
          Length = 313

 Score =  174 bits (442), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 110/310 (35%), Positives = 172/310 (55%), Gaps = 20/310 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+PVL  + I  L      + LD T G GG+S    K  S    +I++D+D  A+   ++
Sbjct: 9   HIPVLYRESIDNLVINKDGIYLDCTLGGGGHSEGILKELSEKGRLISIDQDQQAIDFAKK 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  Y  ++ +F+  F  L   +   G   +DG++ D+GVSS Q+D  +RGFS++    L
Sbjct: 69  RLEKYGNKWQVFKNNFENLDTVIYMAGYDKIDGILMDIGVSSTQLDDPERGFSYRYDTKL 128

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+ +  +SA +VVN+ + + L +IL   GEE+ + RIA  I + R+    +TT +L 
Sbjct: 129 DMRMNQNNPLSAYEVVNEYSEEALMKILFEYGEERNSRRIAKFICEAREIKKIETTGELV 188

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           ++I++   + +    HPA ++FQA+RI VN E+E L + +  A  +LK GG L +++FHS
Sbjct: 189 AIIKRA--YPERAAKHPAKKTFQAIRIEVNRELEVLEKAIDKAVDSLKVGGRLGIITFHS 246

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSN------AHPAVFQSITKKVVVPTQEDVAFNRRS 306
           LEDRLVK  F     K +A     P           A  + ITKK ++P   +V FN R+
Sbjct: 247 LEDRLVKTKF-----KDLATACKCPPGLPICVCGGKAKVKLITKKPIIPEGNEVEFNNRA 301

Query: 307 RSAKLRAGMR 316
            S+KLR   R
Sbjct: 302 HSSKLRVVER 311


>gi|269792475|ref|YP_003317379.1| S-adenosyl-methyltransferase MraW [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100110|gb|ACZ19097.1| S-adenosyl-methyltransferase MraW [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 313

 Score =  174 bits (442), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 106/306 (34%), Positives = 170/306 (55%), Gaps = 26/306 (8%)

Query: 20  HVPVLLEKVIALLNPAPG-KVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQE 76
           H+PV+L+K++ LL P     +++D T GAGG+SR+  +   G+++I +D+D   +   +E
Sbjct: 4   HIPVMLDKILELLRPWEEVGLVVDGTLGAGGHSRAILERCQGASLIGIDQDQSILDIARE 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  + ++       F  +   + D G   V   VFDLG+SS Q+D  +RGFSF   GPL
Sbjct: 64  VLSPFGDRVRTVLGNFRDVGRILADLGSPRVSAFVFDLGISSWQVDTPERGFSFNYKGPL 123

Query: 134 DMRMSCSGI---SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ-SAPFQTTQ 189
           DMRM    +   +A+D+VN  ++ +L  +    GE+  A ++A AI + R+   P +T +
Sbjct: 124 DMRMDMGRLGSRTAADIVNGWSMAELAALFRRYGEDPFAYQVARAICRHREKEGPIETCE 183

Query: 190 DLSSLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            L S+I+  +     +  R HPA R FQALRI VN+E+  L + L         G  +I 
Sbjct: 184 ALVSVIRSAIPAPAQRKMRGHPARRIFQALRIEVNDELGALEELLDQLPSMGSEGCKVIF 243

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +++HSLEDRLVK      +G+ + V               +T+K +VP++E+V  NRR+R
Sbjct: 244 ITYHSLEDRLVKGRMREWAGQDLGV--------------PLTRKPLVPSEEEVELNRRAR 289

Query: 308 SAKLRA 313
           SAK+R 
Sbjct: 290 SAKVRC 295


>gi|255282562|ref|ZP_05347117.1| S-adenosyl-methyltransferase MraW [Bryantella formatexigens DSM
           14469]
 gi|255266855|gb|EET60060.1| S-adenosyl-methyltransferase MraW [Bryantella formatexigens DSM
           14469]
          Length = 312

 Score =  174 bits (442), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 101/308 (32%), Positives = 174/308 (56%), Gaps = 9/308 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H  VLL + I  LN  P  + +D T G GG+S   C+  S    ++ +D+D  A++   E
Sbjct: 5   HTSVLLGETIDALNINPDGIYVDGTLGGGGHSYEICRRLSGRGRLVGIDQDAAAIAAASE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + ++K++ ++ ++ + ++++ +   GV   DG++ DLGVSS Q+D  DRGF++++  PL
Sbjct: 65  RLGEFKDKVTIIRSNYCEMRERLAGIGVTGADGIILDLGVSSYQLDTADRGFTYREDAPL 124

Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM      +A D+VN  +  +L RI+   GE++ A  IA  IV+ R+  P +TT +L 
Sbjct: 125 DMRMDQRQTRTAKDIVNGYSEMELYRIIRDYGEDRFAKNIAKHIVQAREEKPLETTGELI 184

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  +    +    HPA ++FQA+RI +NNE+  L+  L    + L   G + +++FH
Sbjct: 185 HVIKAAIPMKVRAVGGHPAKKTFQAIRIELNNELGVLSDSLDDMIELLNNKGRICIITFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK  F       +  +   +         + +T+K ++P +E++  N RS+SAK
Sbjct: 245 SLEDRIVKNAFRKNENPCICPKEFPVCVCGRKPKGRVLTRKPILPGEEEMKENSRSKSAK 304

Query: 311 LRAGMRTV 318
           LR   R +
Sbjct: 305 LRVFEREI 312


>gi|183221148|ref|YP_001839144.1| S-adenosyl-methyltransferase MraW [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189911239|ref|YP_001962794.1| S-adenosylmethionine-dependentmethyltransferase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|263456288|sp|B0S989|RSMH_LEPBA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263456310|sp|B0SRS3|RSMH_LEPBP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|167775915|gb|ABZ94216.1| S-adenosylmethionine-dependentmethyltransferase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167779570|gb|ABZ97868.1| S-adenosyl-methyltransferase MraW [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 314

 Score =  174 bits (442), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 120/317 (37%), Positives = 171/317 (53%), Gaps = 39/317 (12%)

Query: 20  HVPVLLEKVIALL----NPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73
           H+PVL  +VI+LL    NP P +  LD T G GG+S+   K    + +I +DRD  AV  
Sbjct: 6   HIPVLPSEVISLLQQTKNPNP-QWFLDGTAGEGGHSKLILKTFPEAKLILIDRD--AVML 62

Query: 74  GQETMRDYKEQFSL-----FQATFSQ----LQDYVPDKGVDGVVFDLGVSSMQIDCGDRG 124
            +      KE  SL     FQ  FS+    L   V    +DG + DLGVS        RG
Sbjct: 63  ERAKKEILKEIGSLDRVHAFQMNFSEVDSELLQEVGCPSLDGALVDLGVSLFHFLHSGRG 122

Query: 125 FSFQKSGPLDMRMSCS--GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           F+F+   PLDMR+  +  G +A+DVVN ++V  L ++    GEE+ A +IA+ IV+ R  
Sbjct: 123 FTFKNDEPLDMRLEANIGGKTAADVVNYSSVLHLKKVFWEYGEERWALKIANNIVQTRHK 182

Query: 183 APFQTTQDLSSLIQKTV---YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
             F T  DL  L++ ++   ++ K +  HPATR FQALRI VN E+    +G+R+  + L
Sbjct: 183 KKFGTNTDLVKLVEASIPRKFWPKES--HPATRIFQALRIEVNEELVHAEKGIRALAQCL 240

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
             GG+L  +SFHSLEDR+VK  F                      F+ +TKK ++P++ +
Sbjct: 241 GIGGVLTCISFHSLEDRIVKWTFRDLKDN--------------GPFEILTKKPILPSETE 286

Query: 300 VAFNRRSRSAKLRAGMR 316
           +  NR SRSAKLR  M+
Sbjct: 287 IKENRASRSAKLRGLMK 303


>gi|256425920|ref|YP_003126573.1| S-adenosyl-methyltransferase MraW [Chitinophaga pinensis DSM 2588]
 gi|256040828|gb|ACU64372.1| S-adenosyl-methyltransferase MraW [Chitinophaga pinensis DSM 2588]
          Length = 302

 Score =  174 bits (441), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 116/305 (38%), Positives = 165/305 (54%), Gaps = 23/305 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQE 76
           H+PVLL++VI  L   P  V +DATFG GG+SR+   K+  N  +I  D+D  A +   +
Sbjct: 8   HLPVLLQEVITNLQIQPDGVYVDATFGGGGHSRAILEKLNENGRLIVFDQDEDAYNNRID 67

Query: 77  TMRDYKEQFSLFQATFSQLQDY------VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
             R      +  Q  F  LQ +      VP   VDG++ DLGVSS Q D  +RGFS +  
Sbjct: 68  DPR-----VTFVQQNFRHLQRFLRLYKSVP---VDGILADLGVSSWQFDTAERGFSTRFD 119

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
           G LDMRM   + ++A+ ++  +  K+L  +    GE   A  +A  IV+ R++ P +T  
Sbjct: 120 GDLDMRMDKRNALTAASLLQSSTEKELHLLFQNYGEVTNARTLAKTIVQERKARPMRTIN 179

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           +  S+IQ  V   K N      + FQALRI VN+E   L   L  + + LK GG L +++
Sbjct: 180 EFKSVIQPIV---KGNPQKYLAQVFQALRIVVNDEFGALKDMLNQSAEVLKPGGKLAIIT 236

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRLVK F   ++G+  A          P +F+ +TKK V  + E++  N RSRSA
Sbjct: 237 FHSLEDRLVKNFM--KTGQFEAQEDTFSYETPPKLFRLVTKKPVTASPEELKRNTRSRSA 294

Query: 310 KLRAG 314
           KLR  
Sbjct: 295 KLRVA 299


>gi|227875248|ref|ZP_03993390.1| S-adenosyl-methyltransferase [Mobiluncus mulieris ATCC 35243]
 gi|307700815|ref|ZP_07637840.1| S-adenosyl-methyltransferase MraW [Mobiluncus mulieris FB024-16]
 gi|227844153|gb|EEJ54320.1| S-adenosyl-methyltransferase [Mobiluncus mulieris ATCC 35243]
 gi|307613810|gb|EFN93054.1| S-adenosyl-methyltransferase MraW [Mobiluncus mulieris FB024-16]
          Length = 340

 Score =  174 bits (441), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 116/316 (36%), Positives = 181/316 (57%), Gaps = 14/316 (4%)

Query: 11  SAIHHTIGDHVPVLLEKVIALLNPA----PGKVILDATFGAGGYSRSFCKMGSN--VIAL 64
           S I  T   H PVL+++ + LL PA       V++DAT G GG+S +  +   +  +I +
Sbjct: 2   STITPTAAIHQPVLVQRCVELLAPALIPVERPVLVDATVGLGGHSEALLQRFPHLQIIGI 61

Query: 65  DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCG 121
           DRD  A +   + +  +  +  +  AT+ QL + + ++G   VDG++ DLGVSS+Q+D  
Sbjct: 62  DRDGEARALAGKRLSVFGSRIEIVAATYGQLAEILAERGLETVDGILADLGVSSLQLDET 121

Query: 122 DRGFSFQ-KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            RGF++     PLDMRM  S GI+A+  +   +  ++ R+L   GEEK A +IA  IVK 
Sbjct: 122 ARGFAYAIPEAPLDMRMDQSRGITAAQFIATTSETEIARVLRTYGEEKFARQIARNIVKT 181

Query: 180 RQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R+  P +TT +L  LI+ T+   ++ +  +PA R+FQALR+ VN+E+ +L   L +A  A
Sbjct: 182 REVTPLRTTGELVDLIRATIPAPARRHGGNPAKRTFQALRVAVNDELRDLEVFLTAALDA 241

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297
           L+ GG L+V S+ SLEDRLVK+ F      +V     +IP+   P   Q +T+       
Sbjct: 242 LRVGGRLVVESYQSLEDRLVKQAFTPGIHPEVPRGLPVIPTGYEP-WLQDLTRGAEKADA 300

Query: 298 EDVAFNRRSRSAKLRA 313
            ++  N RS+S +LRA
Sbjct: 301 LELQRNSRSQSVRLRA 316


>gi|148994362|ref|ZP_01823605.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           SP9-BS68]
 gi|147927293|gb|EDK78326.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           SP9-BS68]
          Length = 316

 Score =  174 bits (441), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 110/309 (35%), Positives = 175/309 (56%), Gaps = 14/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           HV VLL + I +L+  P  + +DAT G  G+S       S   ++ A D+D  A+   Q+
Sbjct: 7   HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQQ 66

Query: 77  TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y E+   +  +  F  LQ  + + GV   DG+ +DLGVSS Q+D  +RGFS++K  
Sbjct: 67  RLAPYIEKGMVTFIKDNFRHLQVRLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+  + ++A +VVN  +  DL RI    GE+K + +IA  I + R   P +TT +
Sbjct: 127 PLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQARDVKPIETTTE 186

Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L+ +I K+   +K    + HPA + FQA+RI VN+E+    + ++ +   L   G + V+
Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQSMDMLTLDGRISVI 245

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F   S  +V      IP +  P + + +++K ++P+ E++  N RS 
Sbjct: 246 TFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKM-ELVSRKPILPSAEELEANNRSH 304

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 305 SAKLRVARK 313


>gi|218248877|ref|YP_002374248.1| S-adenosyl-methyltransferase MraW [Cyanothece sp. PCC 8801]
 gi|263447389|sp|B7K639|RSMH_CYAP8 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|218169355|gb|ACK68092.1| S-adenosyl-methyltransferase MraW [Cyanothece sp. PCC 8801]
          Length = 304

 Score =  174 bits (441), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 120/304 (39%), Positives = 170/304 (55%), Gaps = 31/304 (10%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           H+ VL ++ IA LN  PG   LDAT G+GG+SR       +V   A+DRD  A++     
Sbjct: 22  HISVLSQETIAGLNIIPGGHYLDATVGSGGHSRLILATFPDVRITAIDRDSQAIAAAASN 81

Query: 78  MRDY-KEQFSLFQATFSQLQDYVPDKGVD--GVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           + +   E+   +Q  F+   DY P K  +  G++ DLGVSS Q D  +RGFSF+  G LD
Sbjct: 82  LAELGSERLKFWQGNFA---DY-PGKIAEFSGIIADLGVSSPQFDFPERGFSFRHEGALD 137

Query: 135 MRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM     ++A +++NQ +   L  +    GEE+++  +A  IV++R   PF+TT  L+ 
Sbjct: 138 MRMDQTQSLTAGEIINQWSETALADLFYQYGEERRSRSMAKHIVQQR---PFKTTTQLAE 194

Query: 194 LIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            I +TV    +  RIHPATR FQALRI VN E+  L + L  A + L+ GG + ++SFHS
Sbjct: 195 AIAQTVPPKYRYGRIHPATRVFQALRIAVNEELSSLERFLDQAPQWLQPGGRIGIISFHS 254

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK  F  R    + V               +TKK ++P +E+   N RSRSAKLR
Sbjct: 255 LEDRIVKYRF--RDSSWLTV---------------MTKKPIIPQREEQLKNPRSRSAKLR 297

Query: 313 AGMR 316
              R
Sbjct: 298 LAER 301


>gi|313899190|ref|ZP_07832710.1| S-adenosyl-methyltransferase MraW [Clostridium sp. HGF2]
 gi|312956013|gb|EFR37661.1| S-adenosyl-methyltransferase MraW [Clostridium sp. HGF2]
          Length = 311

 Score =  174 bits (441), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 118/303 (38%), Positives = 166/303 (54%), Gaps = 11/303 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77
           H  VLL + I  L      + +D T G GG+S          ++ A DRD  A+   +E 
Sbjct: 4   HYSVLLHESIDNLAIHSDGIYVDGTLGRGGHSAEILARIPQGHLYAFDRDASAIEKSRER 63

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +    +  +L  + FS L+  +  +GV   DG+V DLGVSS Q D   RGFS++   PLD
Sbjct: 64  LAQIGDNVTLIHSNFSNLKRELTARGVTGIDGMVLDLGVSSPQFDEAQRGFSYRFDAPLD 123

Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM  S  +SA  VVN+   ++L RI    GEE  A +IA  I K R+  P +TT  L  
Sbjct: 124 MRMDQSQKLSAYQVVNEWEYQELVRIFFQFGEESFAKQIARKIEKAREVKPIETTFALVD 183

Query: 194 LIQKTVYFSK--NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           +I K+   +K  N + HPA + FQA+RI VN+E+ EL   LR A + L  GG L V+SF 
Sbjct: 184 VI-KSALPAKVLNKKGHPAKKVFQAIRIAVNDELGELQLVLRDALELLHVGGRLCVISFQ 242

Query: 252 SLEDRLVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK  F+S S      +   ++P +   A ++ + KK +  T+E++  N RS SA
Sbjct: 243 SLEDRIVKDTFSSCSKPKQYDKRIPILPQDMEAAPYRLLNKKPITATEEELRENMRSHSA 302

Query: 310 KLR 312
           KLR
Sbjct: 303 KLR 305


>gi|269978137|ref|ZP_06185087.1| S-adenosyl-methyltransferase MraW [Mobiluncus mulieris 28-1]
 gi|269933646|gb|EEZ90230.1| S-adenosyl-methyltransferase MraW [Mobiluncus mulieris 28-1]
          Length = 340

 Score =  174 bits (441), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 116/316 (36%), Positives = 181/316 (57%), Gaps = 14/316 (4%)

Query: 11  SAIHHTIGDHVPVLLEKVIALLNPA----PGKVILDATFGAGGYSRSFCKMGSN--VIAL 64
           S I  T   H PVL+++ + LL PA       V++DAT G GG+S +  +   +  +I +
Sbjct: 2   STITPTAAIHQPVLVQRCVELLAPALIPVERPVLVDATVGLGGHSEALLQRFPHLQIIGI 61

Query: 65  DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCG 121
           DRD  A +   + +  +  +  +  AT+ QL + + ++G   VDG++ DLGVSS+Q+D  
Sbjct: 62  DRDGEARALAGKRLSVFGSRIEIVAATYGQLAEILAERGLETVDGILADLGVSSLQLDET 121

Query: 122 DRGFSFQ-KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            RGF++     PLDMRM  S GI+A+  +   +  ++ R+L   GEEK A +IA  IVK 
Sbjct: 122 ARGFAYAIPEAPLDMRMDQSRGITAAQFIATTSETEIARVLRTYGEEKFARQIARNIVKT 181

Query: 180 RQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R+  P +TT +L  LI+ T+   ++ +  +PA R+FQALR+ VN+E+ +L   L +A  A
Sbjct: 182 REVTPLRTTGELVDLIRATIPAPARRHGGNPAKRTFQALRVAVNDELRDLEVFLTAALDA 241

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297
           L+ GG L+V S+ SLEDRLVK+ F      +V     +IP+   P   Q +T+       
Sbjct: 242 LRVGGRLVVESYQSLEDRLVKQAFTPGIHPEVPRGLPVIPTGYEP-WLQDLTRGAEKADA 300

Query: 298 EDVAFNRRSRSAKLRA 313
            ++  N RS+S +LRA
Sbjct: 301 LELQRNSRSQSVRLRA 316


>gi|227877318|ref|ZP_03995391.1| S-adenosyl-methyltransferase [Lactobacillus crispatus JV-V01]
 gi|256842880|ref|ZP_05548368.1| methylase MraW [Lactobacillus crispatus 125-2-CHN]
 gi|256848746|ref|ZP_05554180.1| cell division protein MraW [Lactobacillus crispatus MV-1A-US]
 gi|262045846|ref|ZP_06018810.1| methylase MraW [Lactobacillus crispatus MV-3A-US]
 gi|312977602|ref|ZP_07789349.1| S-adenosyl-methyltransferase MraW [Lactobacillus crispatus CTV-05]
 gi|227863174|gb|EEJ70620.1| S-adenosyl-methyltransferase [Lactobacillus crispatus JV-V01]
 gi|256614300|gb|EEU19501.1| methylase MraW [Lactobacillus crispatus 125-2-CHN]
 gi|256714285|gb|EEU29272.1| cell division protein MraW [Lactobacillus crispatus MV-1A-US]
 gi|260573805|gb|EEX30361.1| methylase MraW [Lactobacillus crispatus MV-3A-US]
 gi|310895341|gb|EFQ44408.1| S-adenosyl-methyltransferase MraW [Lactobacillus crispatus CTV-05]
          Length = 315

 Score =  174 bits (441), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 113/312 (36%), Positives = 170/312 (54%), Gaps = 17/312 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77
           H  VLL + I  L P  G + +DATFG GG+++          ++  D+D +A+   +  
Sbjct: 5   HTSVLLHETIDNLKPKNGGLYVDATFGGGGHAKYLLSKIDTGTLVGFDQDEYAIKSAKLN 64

Query: 78  MR-----DYKEQFSLFQATFSQLQ-DYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
                  D + +  L    FS L+ D V      G+DG+ +DLGVSS Q D  DRGFS++
Sbjct: 65  FANLLQLDSEPRLELVHDNFSNLEKDLVKLGYSDGIDGIYYDLGVSSPQFDQADRGFSYR 124

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
               LDMRM  S  + A  +VN  + K+L  IL   G+EK + +IAH IV+RR+  P  T
Sbjct: 125 YDARLDMRMDQSQDLDAYQLVNTLSQKELADILYQYGDEKFSRQIAHRIVERRREKPIAT 184

Query: 188 TQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T +L  +I+  +  +++    HPA +SFQALR+ VN+E++ L   L  A K L+ GG + 
Sbjct: 185 TFELVDVIKDAIPAYARRTGGHPAKKSFQALRVAVNHELDVLQASLEEAIKILRPGGRIS 244

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           V++F S ED++VK+ F   S +V   R M  IP    P + + +  K +V +  ++  N 
Sbjct: 245 VITFQSHEDKIVKRIFKKYS-EVEVPRGMPFIPDGMKPTL-RLVNHKPIVASTSELENNN 302

Query: 305 RSRSAKLRAGMR 316
           RS SAKLR   +
Sbjct: 303 RSHSAKLRVAEK 314


>gi|116494758|ref|YP_806492.1| SAM-dependent methyltransferase for cell envelope biogenesis
           [Lactobacillus casei ATCC 334]
 gi|122263824|sp|Q039S2|RSMH_LACC3 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|116104908|gb|ABJ70050.1| SAM-dependent methyltransferase for cell envelope biogenesis
           [Lactobacillus casei ATCC 334]
          Length = 313

 Score =  174 bits (441), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 113/303 (37%), Positives = 161/303 (53%), Gaps = 12/303 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77
           H  VLL++  A L   P    +DAT G GG++R          +IA D+D  A++     
Sbjct: 6   HETVLLKEATAALAVKPAGTYVDATLGRGGHTRQILNHLTTGRLIAFDQDEAAIATVTAD 65

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
                +Q +L    F  L D +   G   VDG+++DLGVSS Q D   RGFS++   PLD
Sbjct: 66  FGTLPKQLTLVHRNFRDLTDALTTLGITEVDGILYDLGVSSPQFDDSKRGFSYRFDAPLD 125

Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM     + A  +VN+    DL RI    GEE  + +IA  I + R   P  TT  L  
Sbjct: 126 MRMDQRQTLDAKTIVNEWPYADLVRIFSRYGEEHFSKQIARRIEQARTVQPITTTFQLVE 185

Query: 194 LIQKTVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           LI+  +  +K  R   HPA + FQA+RI VN+E+  L   L  A K +  GG + V++F 
Sbjct: 186 LIKAGIP-AKARRTGGHPAKKVFQAIRIAVNDELSALESSLEQALKLINVGGRISVITFQ 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDRLVK  F   S      R +  IP++A P  ++ + +K ++P++E++A N R+ SA
Sbjct: 245 SLEDRLVKTMFKEVSSVQDVPRGLPVIPASAQPN-YRLVNRKPILPSEEELAVNHRAHSA 303

Query: 310 KLR 312
           KLR
Sbjct: 304 KLR 306


>gi|257413358|ref|ZP_04742795.2| S-adenosyl-methyltransferase MraW [Roseburia intestinalis L1-82]
 gi|257203798|gb|EEV02083.1| S-adenosyl-methyltransferase MraW [Roseburia intestinalis L1-82]
          Length = 315

 Score =  174 bits (441), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 109/308 (35%), Positives = 172/308 (55%), Gaps = 20/308 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76
           H  VLL + I  LN  P  + +D T G GG+S    K +G N  +I +D+D  A+    E
Sbjct: 8   HYSVLLNETIENLNIRPDGIYVDGTLGGGGHSYQILKRLGENGRLIGIDQDADAIQAAGE 67

Query: 77  TMRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK-SGP 132
            + ++  + +L ++ ++ +++    +   GVDG+V DLGVSS Q+D  +RGF++++   P
Sbjct: 68  RLAEFGNKATLIRSNYANMKEELHAIGVNGVDGIVLDLGVSSFQLDTPERGFTYREPDAP 127

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM      +A D+VN  +  DL RI+   GE+K A  IA  IVK RQ    +T  +L
Sbjct: 128 LDMRMDDRQSQTAKDIVNGYSEMDLYRIIRDYGEDKFAKNIAKHIVKERQKKTIETAGEL 187

Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           + +I+  +    +    HPA R+FQA+RI +N+E+E L+  L      L  GG + +++F
Sbjct: 188 TDIIRAAIPMKVQVTGGHPAKRTFQAIRIELNHELEVLSDHLDEMIDLLNPGGRICIITF 247

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF------QSITKKVVVPTQEDVAFNR 304
           HSLEDR+VK  F              PS+    V       + IT+K ++P+++++  N 
Sbjct: 248 HSLEDRIVKSNFKRNENPCTC-----PSDFPVCVCGKVSKGKVITRKPILPSEKELEENS 302

Query: 305 RSRSAKLR 312
           RS+SAKLR
Sbjct: 303 RSKSAKLR 310


>gi|167838012|ref|ZP_02464871.1| S-adenosyl-methyltransferase MraW [Burkholderia thailandensis
           MSMB43]
          Length = 313

 Score =  174 bits (441), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 118/311 (37%), Positives = 183/311 (58%), Gaps = 21/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  V +D TFG GG+SR+     S    +IA D+DP A+    E
Sbjct: 7   HRTVLLDEAVDALVTRPDGVYVDGTFGRGGHSRAVLARLSEAGRLIAFDKDPRAI----E 62

Query: 77  TMRDYKE-QFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           T +   + +F +   +F+ ++  +  +GV    GV+ DLGVSS Q+D   RGFSF+ +GP
Sbjct: 63  TAKGIADARFEIVHDSFAAMKGALDARGVARVSGVLLDLGVSSPQVDDPARGFSFRANGP 122

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQT 187
           LDMRM  + G SA++ + +A+V++LT ++   GEE+ A +IA AIV RR  +    P  +
Sbjct: 123 LDMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRLGPLDS 182

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T +L+ ++   V   +  +  PATR+FQA+RI VN E+ +L   L +A  +L+ GG L+V
Sbjct: 183 TGELAQIVGHVVKTREKGK-DPATRTFQAIRIHVNQELADLQVVLEAALSSLEQGGRLVV 241

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA--HPAVFQSITKKVVVPTQEDVAFNRR 305
           +SFHSLEDR+VK+F  + +    AV   +P  A   P+    +  + + P+  +VA N R
Sbjct: 242 ISFHSLEDRIVKRFLQTHA-SAPAVDRRLPIRAVDLPSPPLKLLGR-MFPSDAEVAANPR 299

Query: 306 SRSAKLRAGMR 316
           +RSA +R   R
Sbjct: 300 ARSAVMRIAER 310


>gi|306818510|ref|ZP_07452233.1| S-adenosyl-methyltransferase MraW [Mobiluncus mulieris ATCC 35239]
 gi|304648683|gb|EFM45985.1| S-adenosyl-methyltransferase MraW [Mobiluncus mulieris ATCC 35239]
          Length = 340

 Score =  174 bits (441), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 116/316 (36%), Positives = 181/316 (57%), Gaps = 14/316 (4%)

Query: 11  SAIHHTIGDHVPVLLEKVIALLNPA----PGKVILDATFGAGGYSRSFCKMGSN--VIAL 64
           S I  T   H PVL+++ + LL PA       V++DAT G GG+S +  +   +  +I +
Sbjct: 2   STITPTAAIHQPVLVQRCVELLAPALIPVERPVLVDATVGLGGHSEALLQRFPHLQIIGI 61

Query: 65  DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCG 121
           DRD  A +   + +  +  +  +  AT+ QL + + ++G   VDG++ DLGVSS+Q+D  
Sbjct: 62  DRDGEARALAGKRLSVFGSRIEIVAATYGQLAEILAERGLETVDGILADLGVSSLQLDET 121

Query: 122 DRGFSFQ-KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            RGF++     PLDMRM  S GI+A+  +   +  ++ R+L   GEEK A +IA  IVK 
Sbjct: 122 ARGFAYAIPEAPLDMRMDQSRGITAAQFIATTSETEIARVLRTYGEEKFARQIARNIVKT 181

Query: 180 RQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R+  P +TT +L  LI+ T+   ++ +  +PA R+FQALR+ VN+E+ +L   L +A  A
Sbjct: 182 REVTPLRTTGELVDLIRATIPAPARRHGGNPAKRTFQALRVAVNDELRDLEVFLTAALDA 241

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297
           L+ GG L+V S+ SLEDRLVK+ F      +V     +IP+   P   Q +T+       
Sbjct: 242 LRVGGRLVVESYQSLEDRLVKQAFTPGIHPEVPRGLPVIPTGYEP-WLQDLTRGAEKADA 300

Query: 298 EDVAFNRRSRSAKLRA 313
            ++  N RS+S +LRA
Sbjct: 301 LELQRNSRSQSVRLRA 316


>gi|15675533|ref|NP_269707.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes M1 GAS]
 gi|19746583|ref|NP_607719.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes MGAS8232]
 gi|21910939|ref|NP_665207.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes MGAS315]
 gi|28895371|ref|NP_801721.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes SSI-1]
 gi|71904072|ref|YP_280875.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes MGAS6180]
 gi|71911181|ref|YP_282731.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes MGAS5005]
 gi|94988995|ref|YP_597096.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes MGAS9429]
 gi|94990995|ref|YP_599095.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes
           MGAS10270]
 gi|94992888|ref|YP_600987.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes MGAS2096]
 gi|306826911|ref|ZP_07460211.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes ATCC
           10782]
 gi|13622733|gb|AAK34428.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS]
 gi|19748798|gb|AAL98218.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232]
 gi|21905146|gb|AAM80010.1| putative S-adenosyl-methyltransferase MraW [Streptococcus pyogenes
           MGAS315]
 gi|28810617|dbj|BAC63554.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1]
 gi|71803167|gb|AAX72520.1| S-adenosyl-methyltransferase [Streptococcus pyogenes MGAS6180]
 gi|71853963|gb|AAZ51986.1| S-adenosyl-methyltransferase [Streptococcus pyogenes MGAS5005]
 gi|94542503|gb|ABF32552.1| S-adenosyl-methyltransferase [Streptococcus pyogenes MGAS9429]
 gi|94544503|gb|ABF34551.1| S-adenosyl-methyltransferase mraW [Streptococcus pyogenes
           MGAS10270]
 gi|94546396|gb|ABF36443.1| S-adenosyl-methyltransferase mraW [Streptococcus pyogenes MGAS2096]
 gi|304430929|gb|EFM33938.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes ATCC
           10782]
          Length = 337

 Score =  174 bits (441), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 111/323 (34%), Positives = 179/323 (55%), Gaps = 17/323 (5%)

Query: 5   SCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGS--NV 61
           + K M+   HH     V VLL + + +L+  P  + +DAT G  G+S     K+G   ++
Sbjct: 18  TIKVMTKEFHH-----VTVLLHETVDMLDIKPDGIYVDATLGGSGHSAYLLSKLGEEGHL 72

Query: 62  IALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSM 116
              D+D  A+   Q T++ Y  K Q +  +  F  L+  +   GVD   G+++DLGVSS 
Sbjct: 73  YCFDQDQKAIDNAQVTLKSYIDKGQVTFIKDNFRHLKARLTALGVDEIDGILYDLGVSSP 132

Query: 117 QIDCGDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175
           Q+D  +RGFS+++  PLDMRM   S ++A +VVN     DL +I    GE+K + +IA  
Sbjct: 133 QLDERERGFSYKQDAPLDMRMDRQSLLTAYEVVNTYPFNDLVKIFFKYGEDKFSKQIARK 192

Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRS 234
           I + R   P +TT +L+ LI+      +   + HPA + FQA+RI VN+E+    + ++ 
Sbjct: 193 IEQARAIKPIETTTELAELIKAAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQD 252

Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVV 293
           A + L   G + V++FHSLEDRL K+ F   S   V     +IP +  P  F+ +++K +
Sbjct: 253 AMELLALDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPLIPEDMKPK-FELVSRKPI 311

Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316
           +P+  ++  N+R+ SAKLR   +
Sbjct: 312 LPSHSELTANKRAHSAKLRVAKK 334


>gi|326204085|ref|ZP_08193946.1| S-adenosyl-methyltransferase MraW [Clostridium papyrosolvens DSM
           2782]
 gi|325985852|gb|EGD46687.1| S-adenosyl-methyltransferase MraW [Clostridium papyrosolvens DSM
           2782]
          Length = 313

 Score =  174 bits (441), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 116/314 (36%), Positives = 169/314 (53%), Gaps = 31/314 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ I  LN     + +D T G  G+S    K +G    +I LD+D FAV    +
Sbjct: 5   HKSVLLDECIENLNINQDGIYVDGTIGGAGHSSEIYKRLGEKGCLIGLDQDSFAVETSVK 64

Query: 77  TMRDYKEQ--FSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            + + + Q  F +    F  ++    + G   VDG++ DLGVSS Q+D   RGFS+Q   
Sbjct: 65  RLSEIESQADFKVVNTNFKNIRKACSELGIDEVDGILLDLGVSSHQLDEASRGFSYQHDA 124

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM   S +SA DVVN+ + +D+ RI+   GEEK +SRIA  IV+ R + P +TT +
Sbjct: 125 PLDMRMDTKSDLSAYDVVNKYSEQDIYRIIRDYGEEKWSSRIAKFIVEARSNKPVETTYE 184

Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I++ V  S + +  HPA R+FQA+RI VNNE+  L + +      LK  G L +++
Sbjct: 185 LVDIIKRAVPSSARRDGPHPAKRTFQAIRIEVNNELGILNKTIEDCVDLLKGEGRLCIIT 244

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF-----------QSITKKVVVPTQE 298
           FHSLEDR+VK  F            M+     P  F           + + +K +V    
Sbjct: 245 FHSLEDRIVKLQF----------NKMVNPCTCPTSFPVCVCGKKPRAKLVNRKPIVSGVS 294

Query: 299 DVAFNRRSRSAKLR 312
           ++  N R+RSAKLR
Sbjct: 295 ELEENPRARSAKLR 308


>gi|227548905|ref|ZP_03978954.1| S-adenosyl-methyltransferase MraW [Corynebacterium lipophiloflavum
           DSM 44291]
 gi|227079033|gb|EEI16996.1| S-adenosyl-methyltransferase MraW [Corynebacterium lipophiloflavum
           DSM 44291]
          Length = 345

 Score =  174 bits (441), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 112/321 (34%), Positives = 178/321 (55%), Gaps = 24/321 (7%)

Query: 20  HVPVLLEKVIALLNPA-----PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVS 72
           HVPV+ +++  LL PA      G VI+DAT GAGG++  F +   G++VI +DRDP A+ 
Sbjct: 23  HVPVMRDRMADLLAPAVEVFGAGAVIVDATLGAGGHTEHFLRRFPGASVIGVDRDPAALR 82

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDK-----------GVDGVVFDLGVSSMQIDCG 121
              E +  + ++F   QA F  +   + D+           GV G +FDLGVSSMQ+D  
Sbjct: 83  DATERLAPFADRFVGVQARFDDIGTAIRDRDGAIFDAARTHGVAGALFDLGVSSMQLDQE 142

Query: 122 DRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGF+++   PLDMRM   + ++A+DV+N  +  +L RIL   G+E+ A +IA  I+K R
Sbjct: 143 ERGFAYKVDAPLDMRMDPTTTLTAADVLNTYSHGELARILKTYGDERFAGKIASHILKER 202

Query: 181 QSAPFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
           + APF+ +  L  L+ + +   ++    HPA R+FQALRI VN E++ L   +      L
Sbjct: 203 EKAPFERSARLVELLYQAIPAATRRTGGHPAKRTFQALRIEVNGELDALRAVIPVITDLL 262

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
             GG  + +S+ SLED++VK    S +         +      A F+ IT      ++ +
Sbjct: 263 GPGGRAVFMSYQSLEDKIVKNALTSLTTSTTPTGLPMDLPGTAATFRWITHGAEKASEAE 322

Query: 300 VAFNRRSRSAKLRAGMRTVER 320
           +  ++ SR+A +R  +R VE+
Sbjct: 323 I--DQNSRAAPVR--VRGVEK 339


>gi|319786245|ref|YP_004145720.1| S-adenosyl-methyltransferase MraW [Pseudoxanthomonas suwonensis
           11-1]
 gi|317464757|gb|ADV26489.1| S-adenosyl-methyltransferase MraW [Pseudoxanthomonas suwonensis
           11-1]
          Length = 329

 Score =  174 bits (441), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 120/313 (38%), Positives = 181/313 (57%), Gaps = 7/313 (2%)

Query: 4   KSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSN 60
           ++ +    A   T   H+PVL  +V+  L   P    LD TFG GG++R   +    G  
Sbjct: 7   RTAQPGHPADPSTPAAHLPVLFAEVLDGLRVVPEGRYLDGTFGRGGHARGVLERLGPGGR 66

Query: 61  VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDC 120
           ++ +D+DP A++  +        + S+ + +F+ +  +   + +DG++ DLGVSS Q+D 
Sbjct: 67  LLLMDKDPEAIAVAEAGF-GSDPRVSIRRGSFTGMAHWDEARDLDGILLDLGVSSPQLDV 125

Query: 121 GDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFSF K GPLDMRM   SG SA+  + +A+ +++  +L I GEEKQ+ RIA AIV  
Sbjct: 126 AERGFSFGKDGPLDMRMDPDSGESAAQWLARADEREIADVLWIYGEEKQSRRIARAIVAA 185

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
           R   P   T  L++LI   V   K+ R +PATRSFQA+RI +N E+ +L  GL +A  AL
Sbjct: 186 RAQEPLTRTAQLANLIGSVVPRGKD-RSNPATRSFQAIRIHINRELADLEAGLDAALAAL 244

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
           + GG L V+SFHSLEDR+VK+F A  S    A R +  ++    V  ++   +    +E+
Sbjct: 245 RPGGRLAVISFHSLEDRMVKQFIARHSKAPPANRRLPEASVFVPVLAALGGAIRA-GEEE 303

Query: 300 VAFNRRSRSAKLR 312
           +  N R+RSA LR
Sbjct: 304 LQVNVRARSAVLR 316


>gi|253583641|ref|ZP_04860839.1| S-adenosyl-methyltransferase mraW [Fusobacterium varium ATCC 27725]
 gi|251834213|gb|EES62776.1| S-adenosyl-methyltransferase mraW [Fusobacterium varium ATCC 27725]
          Length = 313

 Score =  174 bits (441), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 110/310 (35%), Positives = 172/310 (55%), Gaps = 20/310 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+PVL  + I  L      + LD T G GG+S    K  S    +I++D+D  A+   ++
Sbjct: 9   HIPVLYRESIDNLVINKDGIYLDCTLGGGGHSEGILKELSEKGRLISIDQDQQAIDFAKK 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  Y  ++ +F+  F  L   +   G   +DG++ D+GVSS Q+D  +RGFS++    L
Sbjct: 69  RLEKYGNKWQVFKNNFENLDTVIYMAGYDKIDGILMDIGVSSTQLDDPERGFSYRYDTKL 128

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  + +SA +VVN+ + + L +IL   GEE+ + RIA  I + R+    +TT +L 
Sbjct: 129 DMRMNQNNSLSAYEVVNEYSEEALMKILFEYGEERNSRRIAKFICEAREIKKIETTGELV 188

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           ++I++   + +    HPA ++FQA+RI VN E+E L + +  A  +LK GG L +++FHS
Sbjct: 189 AIIKRA--YPERAAKHPAKKTFQAIRIEVNRELEVLEKAIDKAVDSLKIGGRLGIITFHS 246

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSN------AHPAVFQSITKKVVVPTQEDVAFNRRS 306
           LEDRLVK  F     K +A     P           A  + ITKK ++P   +V FN R+
Sbjct: 247 LEDRLVKTKF-----KDLATACKCPPGLPICVCGGKAKVKLITKKPIIPEGNEVEFNNRA 301

Query: 307 RSAKLRAGMR 316
            S+KLR   R
Sbjct: 302 HSSKLRVVER 311


>gi|332829620|gb|EGK02266.1| ribosomal RNA small subunit methyltransferase H [Dysgonomonas gadei
           ATCC BAA-286]
          Length = 300

 Score =  174 bits (441), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 111/301 (36%), Positives = 168/301 (55%), Gaps = 16/301 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+P LL + +  +N   G + +D TFG GG+S+       N   + A D+D  A++  QE
Sbjct: 3   HIPALLHESVDGMNIRTGSICVDVTFGGGGHSKEILSHLGNKGHLYAFDQDEDAINNIQE 62

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQ-KSGP 132
             +     F+  ++ F  L++++   GV   D ++ DLGVSS   D  DRGFSF+ +   
Sbjct: 63  DSK-----FTFIRSNFRFLKNFIKYHGVEEVDAILADLGVSSHHFDAEDRGFSFRFEDSD 117

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+  +G +A+ ++N    + L  I  + GE K + RIA AIVK R+  P++   DL
Sbjct: 118 LDMRMNQKAGKTAAQILNTYTEEQLADIFYLYGELKPSRRIASAIVKTRKEKPYRKVSDL 177

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
              +   V   +  +     ++FQALRI VN E+E L + L  A   LK GG L+V+++H
Sbjct: 178 LDTLNSFVGRGEKEK-KVLAQAFQALRIEVNEEMETLKEMLEQALDILKPGGRLVVITYH 236

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDRLVK FF + + +    +    +   P  F+ I  KV+VP++E+   N RSRSAKL
Sbjct: 237 SLEDRLVKNFFKTGNFEGKVEKDFFGNFETP--FKLINNKVIVPSREEEERNPRSRSAKL 294

Query: 312 R 312
           R
Sbjct: 295 R 295


>gi|109914373|sp|Q5XAL3|RSMH_STRP6 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 316

 Score =  174 bits (441), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 109/308 (35%), Positives = 175/308 (56%), Gaps = 12/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGS--NVIALDRDPFAVSCGQE 76
           HV VLL + + +L+  P  + +DAT G  G+S     K+G   ++   D+D  A+   Q 
Sbjct: 7   HVTVLLHETVDMLDIKPDGIYVDATLGGSGHSAYLLSKLGEEGHLYCFDQDQKAIDNAQV 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSG 131
           T++ Y  K Q +  +  F  L+  +   GVD   G+++DLGVSS Q+D  +RGFS+++  
Sbjct: 67  TLKSYIDKGQVTFIKDNFRHLKARLTALGVDEIDGILYDLGVSSPQLDERERGFSYKQDA 126

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM   S ++A +VVN     DL +I    GE+K + +IA  I + R   P +TT +
Sbjct: 127 PLDMRMDRQSLLTAYEVVNTYPFNDLVKIFFKYGEDKFSKQIARKIEQARAIKPIETTTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ LI+      +   + HPA + FQA+RI VN+E+    + ++ A + L   G + V++
Sbjct: 187 LAELIKAAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQEAMELLALDGRISVIT 246

Query: 250 FHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDRL K+ F   S   V     +IP +  P  F+ +++K ++P+  ++A N+R+ S
Sbjct: 247 FHSLEDRLTKQLFKEASTVDVPKGLPLIPEDMKPK-FELVSRKPILPSHSELAANKRAHS 305

Query: 309 AKLRAGMR 316
           AKLR   +
Sbjct: 306 AKLRVAKK 313


>gi|55821677|ref|YP_140119.1| S-adenosyl-methyltransferase MraW [Streptococcus thermophilus LMG
           18311]
 gi|55737662|gb|AAV61304.1| S-adenosylmethionine-dependent methyltransferase, putative
           [Streptococcus thermophilus LMG 18311]
          Length = 354

 Score =  174 bits (441), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 114/323 (35%), Positives = 176/323 (54%), Gaps = 19/323 (5%)

Query: 6   CKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVI 62
            K M++  HH     V VLL + + +L+  P  + +DAT G  G+S       S   ++ 
Sbjct: 36  IKIMTNEFHH-----VTVLLHETVDMLDIKPDGIYVDATLGGAGHSSYLLSQLSEKGHLY 90

Query: 63  ALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQ 117
             D+D  A+   Q  ++DY  K   +  +  F  L+  +   GV   DG+++DLGVSS Q
Sbjct: 91  CFDQDQKAIDNAQVRLKDYIDKGMVTFIKDNFRNLKSNLEALGVSEIDGILYDLGVSSPQ 150

Query: 118 IDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
           +D  +RGFS+++   LDMRM+  + ++A DVVN     DL RI    GE+K + +IA  I
Sbjct: 151 LDERERGFSYKQDAKLDMRMNEEASLTAYDVVNTYPYNDLVRIFFKYGEDKFSKQIARKI 210

Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRS 234
            + RQ  P +TT +L+ +I K+   +K    + HPA + FQA+RI VN+E+    + ++ 
Sbjct: 211 EQARQVKPIETTTELAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQE 269

Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVV 293
           A   L   G + V++FHSLEDRL K+ F   S   V      IP +  P V   + +K +
Sbjct: 270 ALDLLAVNGRISVITFHSLEDRLTKQLFKEASTADVPKGLPFIPEDLQPKV-ALVNRKPI 328

Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316
           +P+QE++  N RS SAKLR   +
Sbjct: 329 LPSQEELEANNRSHSAKLRVAKK 351


>gi|282857251|ref|ZP_06266491.1| S-adenosyl-methyltransferase MraW [Pyramidobacter piscolens W5455]
 gi|282584901|gb|EFB90229.1| S-adenosyl-methyltransferase MraW [Pyramidobacter piscolens W5455]
          Length = 313

 Score =  174 bits (441), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 116/304 (38%), Positives = 164/304 (53%), Gaps = 23/304 (7%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76
           +HVPVLL KV+  ++     +I+D T G GGYS +F K      V+ +DRD  A +   +
Sbjct: 4   EHVPVLLAKVVESMDLKADALIVDGTLGLGGYSEAFLKRSPRWRVVGIDRDERARNIACQ 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  + E+F      F  +       G   VD VV DLGVS+MQ+  G RGFSF++ GPL
Sbjct: 64  RLAPFGERFLALDGDFRNIGGLCASVGIRAVDCVVLDLGVSNMQLADGRRGFSFREDGPL 123

Query: 134 DMRMS-CSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           DMRM+   G  SAS++VN+   + L  I    GEE+ A  IA  IVK R   P  +T +L
Sbjct: 124 DMRMNPAEGTRSASELVNELPRESLADIFRKYGEERFAWSIAGEIVKERLKRPITSTAEL 183

Query: 192 SSLIQKTVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
             +I++ +      ++  HPA + FQALR+ VN+E+  L QGL  A   L   G L+VV+
Sbjct: 184 VEVIRRGIPAPVMRKMNGHPARKVFQALRVAVNDELGALEQGLDEAFSLLAEEGRLLVVT 243

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           +HSLEDR+VK+ F   + +   V                 +K  VP  E+V  N +SRSA
Sbjct: 244 YHSLEDRIVKRRFREWNEEGKGVLE--------------PRKGQVPDDEEVERNPKSRSA 289

Query: 310 KLRA 313
           +LR 
Sbjct: 290 RLRG 293


>gi|183983192|ref|YP_001851483.1| methyltransferase [Mycobacterium marinum M]
 gi|262825131|sp|B2HGS5|RSMH_MYCMM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|183176518|gb|ACC41628.1| methyltransferase [Mycobacterium marinum M]
          Length = 345

 Score =  174 bits (441), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 115/312 (36%), Positives = 174/312 (55%), Gaps = 18/312 (5%)

Query: 20  HVPVLLEKVIALLNPAPGK--------VILDATFGAGGYSRSFCKM--GSNVIALDRDPF 69
           HVPVL ++ + LL PA  +        V++DAT GAGG++  F     G  +I LDRDP 
Sbjct: 15  HVPVLAQRCVELLRPALTRHHADGSEAVLVDATIGAGGHAERFLTELPGLRLIGLDRDPS 74

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSSMQIDCGDR 123
           A+   +  +  + ++ +L    +  L   + + G      +DG +FDLGVSSMQ+D  +R
Sbjct: 75  ALEIVRTRLARFADRVTLVHTRYDGLASALTELGYGAAQSIDGALFDLGVSSMQLDQAER 134

Query: 124 GFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GF++ K  PLDMRM+  S +SA+D++N  +   L  IL   GEE+ A RIA  I++RR  
Sbjct: 135 GFAYSKDAPLDMRMNPQSALSAADIINTYDEAALADILHRYGEERFARRIAARIIRRRAD 194

Query: 183 APFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            PF TT +L +L+ + +   ++    HPA R+FQALRI VN+E+  L   + +A  AL  
Sbjct: 195 KPFTTTAELVALLYEAIPAAARRTGGHPAKRTFQALRIAVNDELGSLRSAIPAAMDALAV 254

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           GG ++V+++ SLEDR+VK+ FA        +   +    H   F+S+T         +V 
Sbjct: 255 GGRIVVMAYQSLEDRIVKRVFADAVASRTPMDLPVELPGHGPRFRSLTHGAERADAAEVE 314

Query: 302 FNRRSRSAKLRA 313
            N RS   +LRA
Sbjct: 315 RNPRSAPVRLRA 326


>gi|150003970|ref|YP_001298714.1| S-adenosyl-methyltransferase MraW [Bacteroides vulgatus ATCC 8482]
 gi|294778005|ref|ZP_06743439.1| S-adenosyl-methyltransferase MraW [Bacteroides vulgatus PC510]
 gi|263445994|sp|A6L078|RSMH_BACV8 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|149932394|gb|ABR39092.1| S-adenosyl-methyltransferase MraW [Bacteroides vulgatus ATCC 8482]
 gi|294448063|gb|EFG16629.1| S-adenosyl-methyltransferase MraW [Bacteroides vulgatus PC510]
          Length = 304

 Score =  174 bits (440), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 113/300 (37%), Positives = 169/300 (56%), Gaps = 16/300 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76
           HVPVLL + +  +N  PG + +DATFG GG+S+   S     +++ + D+D       + 
Sbjct: 9   HVPVLLNESVDGMNIQPGGIYVDATFGGGGHSKEILSRLDSTAHLYSFDQDE---DAEKN 65

Query: 77  TMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + D   +F+  ++ F  L +   Y   +GVD ++ DLGVSS   D  +RGFSF+  G L
Sbjct: 66  IVSD--SRFTFVRSNFRYLPNFLRYYGVEGVDAILADLGVSSHHFDDSERGFSFRFEGKL 123

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  +G++A+DVVN  + + L  I  + GE K + ++A AIVK R      T  D  
Sbjct: 124 DMRMNKRAGMTAADVVNTYDEERLANIFYLYGELKNSRKLASAIVKARGVKQIVTIGDFL 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I+    F +        + FQALRI VN E+E L + L +A KALK GG L+V+++HS
Sbjct: 184 EVIKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLYAATKALKPGGRLVVITYHS 241

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK    + + +  A +    +   P  F+ +  KV+V   E+V  N RSRSAKLR
Sbjct: 242 LEDRMVKNIMKTGNIEGKAEQDFFGNVQTP--FKLVNNKVIVAGNEEVTRNPRSRSAKLR 299


>gi|227486691|ref|ZP_03917007.1| S-adenosylmethionine-dependent methyltransferase involved in cell
           envelope biogenesis [Anaerococcus lactolyticus ATCC
           51172]
 gi|227235279|gb|EEI85294.1| S-adenosylmethionine-dependent methyltransferase involved in cell
           envelope biogenesis [Anaerococcus lactolyticus ATCC
           51172]
          Length = 309

 Score =  174 bits (440), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 108/306 (35%), Positives = 165/306 (53%), Gaps = 12/306 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
           +H PVL  + I  LN  P  +  D T G GG+S+   +  S    +I +D+D  A+    
Sbjct: 7   EHTPVLYRECIENLNIKPDGIYADLTLGKGGHSKLILEKLSAKGLLIGIDQDKAAIEAAS 66

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E ++DY  +   F   F  +   + + G   +DG + D+GVSS QID  +RGFS+   GP
Sbjct: 67  ENLKDYDNKV-FFNTNFENIGKVLTEAGFNKIDGALMDIGVSSYQIDNPERGFSYIHDGP 125

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+    ++A  +VN+ +  +LTRI    GEE+ +  IA  IVK R +    TT  L
Sbjct: 126 LDMRMNRQNELTAEKIVNECSQDELTRIFFDYGEERFSKAIAKNIVKARANERINTTFKL 185

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +++ K+  F++   +HP  R FQALRI VN E++ L + + +    +   G L +++FH
Sbjct: 186 RNIVMKSARFTE---VHPEKRVFQALRIEVNRELDVLTKAIDTIIDFIDKDGRLAIITFH 242

Query: 252 SLEDRLVK-KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK KF    +G +      +    H A  + ITKK +    +++  N RS+ AK
Sbjct: 243 SLEDRIVKNKFKDLATGCICPPEIPVCVCNHVAKVKIITKKPITAKADELRENSRSKPAK 302

Query: 311 LRAGMR 316
           LR   R
Sbjct: 303 LRVCQR 308


>gi|195953230|ref|YP_002121520.1| S-adenosyl-methyltransferase MraW [Hydrogenobaculum sp. Y04AAS1]
 gi|263456148|sp|B4U8T1|RSMH_HYDS0 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|195932842|gb|ACG57542.1| S-adenosyl-methyltransferase MraW [Hydrogenobaculum sp. Y04AAS1]
          Length = 296

 Score =  174 bits (440), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 105/302 (34%), Positives = 174/302 (57%), Gaps = 28/302 (9%)

Query: 20  HVPVLLEKVIALL-NPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++V   L NP P K+ +DAT G GG++++  ++  +  +I +D+D  A+   +E
Sbjct: 2   HKSVLLKEVTDFLSNPCP-KIHIDATLGLGGHAKALLEVCKDTFLIGIDKDENAIEIAKE 60

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++ +   F  +  +F      + ++G+   D ++FD GVSS+Q+D  + GFSFQ+   L
Sbjct: 61  KLKGFNAVF--YHGSFKDFDIVLKEEGLLYFDSILFDFGVSSLQLD-EEEGFSFQREDFL 117

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM      +A  V+N    K+L  I    GEE+ + +IA +IV++R+  P +TT++L 
Sbjct: 118 DMRMDKRQQKTAYIVINTYKEKELADIFYKYGEERLSKKIARSIVEKRKKKPIETTKELV 177

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            ++  + Y  K ++I+PAT+ FQALRI VN+E+E++   L       K G     +SFHS
Sbjct: 178 DIVS-SCYPYKYSKINPATKVFQALRIEVNSELEDIKIALSKLLDFAKEGSKFAFISFHS 236

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDRLVK+F  + + K+                +  +KK + P+ E++ +N+R+RSAKLR
Sbjct: 237 LEDRLVKEFIKNNADKL----------------KVCSKKPITPSDEELLYNKRARSAKLR 280

Query: 313 AG 314
             
Sbjct: 281 CA 282


>gi|223933600|ref|ZP_03625580.1| S-adenosyl-methyltransferase MraW [Streptococcus suis 89/1591]
 gi|253752421|ref|YP_003025562.1| S-adenosyl-methyltransferase MraW [Streptococcus suis SC84]
 gi|253754247|ref|YP_003027388.1| S-adenosyl-methyltransferase MraW [Streptococcus suis P1/7]
 gi|253756181|ref|YP_003029321.1| S-adenosyl-methyltransferase MraW [Streptococcus suis BM407]
 gi|302024366|ref|ZP_07249577.1| S-adenosyl-methyltransferase MraW [Streptococcus suis 05HAS68]
 gi|330833363|ref|YP_004402188.1| S-adenosyl-methyltransferase MraW [Streptococcus suis ST3]
 gi|262827260|sp|C6GW75|RSMH_STRS4 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262827309|sp|C5VZR6|RSMH_STRSE RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262827338|sp|C6GPU1|RSMH_STRSX RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262831434|sp|A4VX71|RSMH_STRSY RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262831441|sp|A4W3H4|RSMH_STRS2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|223897726|gb|EEF64107.1| S-adenosyl-methyltransferase MraW [Streptococcus suis 89/1591]
 gi|251816710|emb|CAZ52352.1| S-adenosyl-methyltransferase MraW [Streptococcus suis SC84]
 gi|251818645|emb|CAZ56480.1| S-adenosyl-methyltransferase MraW [Streptococcus suis BM407]
 gi|251820493|emb|CAR47246.1| S-adenosyl-methyltransferase MraW [Streptococcus suis P1/7]
 gi|319758827|gb|ADV70769.1| S-adenosyl-methyltransferase MraW [Streptococcus suis JS14]
 gi|329307586|gb|AEB82002.1| S-adenosyl-methyltransferase MraW [Streptococcus suis ST3]
          Length = 316

 Score =  174 bits (440), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 110/310 (35%), Positives = 171/310 (55%), Gaps = 14/310 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
           +H  VLL + + +L+  P  + +DAT G  G+S         G ++ A D+D  A+    
Sbjct: 6   NHTTVLLHETVDMLDIKPNGIYVDATLGGAGHSEYLLSQLTDGGHLYAFDQDQTAIDHAH 65

Query: 76  ETMRDYKE--QFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130
             +  Y E  Q +  +  F  L+  + + GV   DG+ +DLGVSS Q+D  +RGFS+++ 
Sbjct: 66  IRLASYIEKGQVTFIRDNFRNLKTRLAELGVTEIDGICYDLGVSSPQLDERERGFSYKQD 125

Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM+  G ++A DVVN  +  DL RI    GE+K + +IA  I + R   P +TT 
Sbjct: 126 APLDMRMNREGHLTAYDVVNNYDYHDLVRIFFKYGEDKFSKQIARKIEQARAVKPIETTT 185

Query: 190 DLSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           +L+ LI K+   +K    + HPA + FQA+RI VN+E+    + ++ A   L   G + V
Sbjct: 186 ELAELI-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDLLALDGRISV 244

Query: 248 VSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           ++FHSLEDRL K+ F   S   V      IP +   A  + + +K ++P+QE++  N R+
Sbjct: 245 ITFHSLEDRLTKQLFKEASTIDVPKGLPFIPDDL-KAPLELVNRKPILPSQEELEANNRA 303

Query: 307 RSAKLRAGMR 316
            SAKLR   +
Sbjct: 304 HSAKLRVAKK 313


>gi|169831601|ref|YP_001717583.1| S-adenosyl-methyltransferase MraW [Candidatus Desulforudis
           audaxviator MP104C]
 gi|263446209|sp|B1I4D9|RSMH_DESAP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|169638445|gb|ACA59951.1| S-adenosyl-methyltransferase MraW [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 324

 Score =  174 bits (440), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 113/308 (36%), Positives = 171/308 (55%), Gaps = 19/308 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQE 76
           H PV+L +V+  L+P PG   +D T G GG++     ++G    ++ +DRD  A++    
Sbjct: 8   HQPVMLREVLEWLDPKPGGTYVDCTLGGGGHALGVLERIGGRGLLVGIDRDADALAAAAF 67

Query: 77  TMRDYKEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  Y +   L QA F +L   +       V G+++DLGVSS Q+D   RGF +Q+  PL
Sbjct: 68  RLAGYGDGVRLVQADFRELAAVLRRLETGPVQGILYDLGVSSHQLDTASRGFGYQQDAPL 127

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM    G++A+D+VN+    +L+ ++   GEE+ + RIA  I + R+  P  TT  L+
Sbjct: 128 DMRMDPGGGVTAADLVNRLPEDELSDLIKAYGEERWSRRIAAFIARERKREPILTTGRLA 187

Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I++ V   ++    HPA R+FQALRI VN+E+  L   L  A   L AGG ++V+S+H
Sbjct: 188 EVIKEAVPARARRTGPHPARRTFQALRIAVNDELGALKTSLHQAVDLLDAGGRVVVLSYH 247

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPA------VFQSITKKVVVPTQEDVAFNRR 305
           SLEDRLVK  F     +  AV    P                +T +  VP ++++A N R
Sbjct: 248 SLEDRLVKDTF-----REFAVHCKCPPGLPECRCGVVPRLDILTSRPRVPGEDEIAANPR 302

Query: 306 SRSAKLRA 313
           +RSAKLRA
Sbjct: 303 ARSAKLRA 310


>gi|146319398|ref|YP_001199110.1| S-adenosyl-methyltransferase MraW [Streptococcus suis 05ZYH33]
 gi|146321602|ref|YP_001201313.1| S-adenosyl-methyltransferase MraW [Streptococcus suis 98HAH33]
 gi|145690204|gb|ABP90710.1| Predicted S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [Streptococcus suis 05ZYH33]
 gi|145692408|gb|ABP92913.1| Predicted S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [Streptococcus suis 98HAH33]
 gi|292559026|gb|ADE32027.1| methyltransferase [Streptococcus suis GZ1]
          Length = 323

 Score =  174 bits (440), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 110/310 (35%), Positives = 171/310 (55%), Gaps = 14/310 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
           +H  VLL + + +L+  P  + +DAT G  G+S         G ++ A D+D  A+    
Sbjct: 13  NHTTVLLHETVDMLDIKPNGIYVDATLGGAGHSEYLLSQLTDGGHLYAFDQDQTAIDHAH 72

Query: 76  ETMRDYKE--QFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130
             +  Y E  Q +  +  F  L+  + + GV   DG+ +DLGVSS Q+D  +RGFS+++ 
Sbjct: 73  IRLASYIEKGQVTFIRDNFRNLKTRLAELGVTEIDGICYDLGVSSPQLDERERGFSYKQD 132

Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM+  G ++A DVVN  +  DL RI    GE+K + +IA  I + R   P +TT 
Sbjct: 133 APLDMRMNREGHLTAYDVVNNYDYHDLVRIFFKYGEDKFSKQIARKIEQARAVKPIETTT 192

Query: 190 DLSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           +L+ LI K+   +K    + HPA + FQA+RI VN+E+    + ++ A   L   G + V
Sbjct: 193 ELAELI-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDLLALDGRISV 251

Query: 248 VSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           ++FHSLEDRL K+ F   S   V      IP +   A  + + +K ++P+QE++  N R+
Sbjct: 252 ITFHSLEDRLTKQLFKEASTIDVPKGLPFIPDDL-KAPLELVNRKPILPSQEELEANNRA 310

Query: 307 RSAKLRAGMR 316
            SAKLR   +
Sbjct: 311 HSAKLRVAKK 320


>gi|310287093|ref|YP_003938351.1| S-adenosyl-methyltransferase MraW [Bifidobacterium bifidum S17]
 gi|309251029|gb|ADO52777.1| S-adenosyl-methyltransferase MraW [Bifidobacterium bifidum S17]
          Length = 370

 Score =  174 bits (440), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 114/306 (37%), Positives = 168/306 (54%), Gaps = 15/306 (4%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74
           H PVLLE+ ++L+ PA   PG + +D T G  G++ +F K    + V+ +DRD  A++  
Sbjct: 8   HQPVLLEQCVSLVAPALQDPGSIAVDCTLGLAGHTIAFLKAAPQARVLGIDRDAEALAMA 67

Query: 75  QETM--RDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQK 129
            E +      ++F    A F      + D+G+D    V  DLG+SS+QID  DRGFS+  
Sbjct: 68  TERIAGEGLSDRFIPVHAAFDAFGQVLDDQGIDRVNAVFMDLGLSSLQIDETDRGFSYAH 127

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM  S  ++A  V+ +   ++L RI    GEE+ + +IA  IV+RR   P  T+
Sbjct: 128 DAPLDMRMDVSQPLTAQRVLAEYPERELVRIFRAYGEERFSRQIAREIVRRRAQEPLTTS 187

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ L+ + V  +     +PA R FQALRI VN E+++LA  L      L   G L+V 
Sbjct: 188 AQLNRLVDEVVPQAHRPAGNPAKRVFQALRIEVNGELDKLAGTLPQIACRLAPNGRLVVE 247

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           S+HSLED+ VK F  +   +V A   M  IP +A P  F  +T+  V    +++A N RS
Sbjct: 248 SYHSLEDKTVKSFM-NEGLRVDAPADMPVIPDDAQP-FFAPLTRGAVQSGPDEIAANPRS 305

Query: 307 RSAKLR 312
            S +LR
Sbjct: 306 ASVRLR 311


>gi|295104209|emb|CBL01753.1| S-adenosyl-methyltransferase MraW [Faecalibacterium prausnitzii
           SL3/3]
          Length = 321

 Score =  174 bits (440), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 112/304 (36%), Positives = 167/304 (54%), Gaps = 12/304 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-----KMGSNVIALDRDPFAVSC 73
           +H+PVLL + +  L   P    LD T G  G+SR          G  +I+LD+DP AV  
Sbjct: 15  EHIPVLLNECLTGLAIDPAGTYLDGTAGGAGHSRQIALRLDAAKGGRLISLDQDPDAVQT 74

Query: 74  GQETMRDYKEQFSLFQATF---SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +  +       ++ Q  F    Q  + +  + ++G + DLGVSS Q+D   RGFS++  
Sbjct: 75  ARSRLAGLPA--TVVQINFRYAGQALEQLGIEKINGALLDLGVSSHQLDDAARGFSYRAD 132

Query: 131 GPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            PLDMRMS  G +A+D+VN  + ++L RIL   GEE  A +IA  IV+ R++AP  TT  
Sbjct: 133 APLDMRMSQQGETAADLVNTESREELARILRDYGEEPYAWQIAGKIVETRETAPILTTLQ 192

Query: 191 LSSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ ++   +  ++  +  +P+ R+FQALRI VN+E++ L +GL +    L  GG L V++
Sbjct: 193 LADIVASAMPPAERRKNKNPSRRTFQALRIAVNHELDALEEGLDTIFDHLAPGGRLCVIT 252

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDRLVK  F   S          +      A  + IT+K +    +++  NRRSRS
Sbjct: 253 FHSLEDRLVKNKFRRWSTACTCPPEFPVCVCGGKAKAKLITRKPIEADTQELEENRRSRS 312

Query: 309 AKLR 312
           A LR
Sbjct: 313 AHLR 316


>gi|332969039|gb|EGK08079.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Kingella
           kingae ATCC 23330]
          Length = 321

 Score =  174 bits (440), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 114/311 (36%), Positives = 173/311 (55%), Gaps = 18/311 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQ 75
           +H+ VLL + +A LN  P  V +D TFG GG+SR    ++G    +I  D+DP A+   Q
Sbjct: 7   EHITVLLHEAVAALNIQPNGVYVDGTFGRGGHSRLILSQLGEQGRLIVFDKDPQAIEVAQ 66

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + +     + S+    F+  +    + G   +DG +FDLG+SS Q+D G RGFSF+   P
Sbjct: 67  K-LAQQDARVSVVHNGFATFEAACTNLGLDKIDGALFDLGISSPQVDDGSRGFSFRFDAP 125

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G SA++ +  A+ +++  ++   GEE+ + +IA  IV +R  +P  TT+ L
Sbjct: 126 LDMRMDTTRGQSAAEWLAVASEQEIHEVIKNYGEERFSRQIARTIVAQRSESPINTTRQL 185

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           +++  + V  S+      ATR+FQA+RIF+N E++E+ Q L      L  GG L V++FH
Sbjct: 186 AAITAQCVR-SRERGQDRATRTFQAIRIFINRELDEVEQVLPQVVNRLNVGGRLAVIAFH 244

Query: 252 SLEDRLVKKFFASRSG-----KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           SLEDR+VK+F    S      K  A++    ++      Q I K      QE V  N R+
Sbjct: 245 SLEDRIVKQFMRQHSSHAPLPKWAAIKE---ADLPQPPLQLIGKASKASVQE-VQHNPRA 300

Query: 307 RSAKLRAGMRT 317
           RSA LR   RT
Sbjct: 301 RSAVLRVAERT 311


>gi|237785335|ref|YP_002906040.1| S-adenosyl-methyltransferase [Corynebacterium kroppenstedtii DSM
           44385]
 gi|263446144|sp|C4LI42|RSMH_CORK4 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|237758247|gb|ACR17497.1| S-adenosyl-methyltransferase [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 390

 Score =  174 bits (440), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 116/324 (35%), Positives = 179/324 (55%), Gaps = 29/324 (8%)

Query: 20  HVPVLLEKVIALLNP---------APGKVILDATFGAGGYSRSFCKM--GSNVIALDRDP 68
           HVPV+LE+++ L+ P         AP  VILD T GAGG++ SF +    + VI +DRD 
Sbjct: 11  HVPVMLERMVELIAPTVTESSENSAP-SVILDGTLGAGGHTESFLERFPSAMVIGVDRDK 69

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD-----------KGVDGVVFDLGVSSMQ 117
             +S   E +  ++++F    A F    + + D            G+    FDLGVSSMQ
Sbjct: 70  KELSRTTERLSRFQDRFYPVHARFDNFDEALDDADHPVVDAFDAHGLSAGFFDLGVSSMQ 129

Query: 118 IDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
           +D  DRGF+++  GPLDMRM  S G +A+DV+N  +  +L RIL   G+E+ A  +A AI
Sbjct: 130 LDQVDRGFTYRDDGPLDMRMDTSTGKTAADVLNTYSHGELARILKTYGDERFAGPLARAI 189

Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           V+ R+  P+ T+Q L  LI  T+  S + +  HPA R+FQALR+ VN E++ L + +   
Sbjct: 190 VREREKEPWSTSQRLVDLIYATIPASARRHGGHPAKRTFQALRVEVNAELDALRRVIPKV 249

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVV 293
              L  GG  + +S+ SLED++VK+  A  + S     +   +P++A    F  +T+   
Sbjct: 250 CSYLHLGGRAVFMSYQSLEDKIVKRELAALTESKTPPGLPIDLPNSA--PDFHLVTRGSE 307

Query: 294 VPTQEDVAFNRRSRSAKLRAGMRT 317
              +++   N R+ S ++RA  RT
Sbjct: 308 KADEQENNKNPRAHSVRVRAVERT 331


>gi|288553170|ref|YP_003425105.1| S-adenosyl-methyltransferase MraW [Bacillus pseudofirmus OF4]
 gi|288544330|gb|ADC48213.1| S-adenosyl-methyltransferase MraW [Bacillus pseudofirmus OF4]
          Length = 311

 Score =  174 bits (440), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 110/303 (36%), Positives = 168/303 (55%), Gaps = 11/303 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           HV VL E+ +  L   P  + +D T G  G+S    +  ++   + A D+D  A+S  +E
Sbjct: 4   HVTVLKEESVNGLAIKPDGIYVDCTLGGAGHSSLILEQLNDEGHLYAFDQDDTALSNAEE 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  YK +F+L ++ F  L++ +   G   VDGV+FDLGVSS Q+D  +RGFS+ +   L
Sbjct: 64  VLAPYKGKFTLIRSNFRFLREELAKHGISKVDGVLFDLGVSSPQLDEAERGFSYHQDAAL 123

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  +  ++A  VVN+     L  I+   GEEK A +IA  I  RR+    +TT +L 
Sbjct: 124 DMRMDQTAPLTAHQVVNEWEFNRLVSIISRYGEEKFAKQIARKIEARREIKTIETTGELV 183

Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  +   ++    HPA R+FQA+RI VN+E+    + L  A       G + V++FH
Sbjct: 184 EIIKDAIPAPARRTGGHPAKRTFQAIRIAVNDELGSFEEALEDAITITNPKGRICVITFH 243

Query: 252 SLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDRL K+ F  +S    +     +IP    P + + IT+K +V   E++  N R+RSA
Sbjct: 244 SLEDRLCKEIFKEKSKGPDLPPGLPVIPEGFEPEL-KLITRKPIVAGNEELTANNRARSA 302

Query: 310 KLR 312
           KLR
Sbjct: 303 KLR 305


>gi|284039278|ref|YP_003389208.1| S-adenosyl-methyltransferase MraW [Spirosoma linguale DSM 74]
 gi|283818571|gb|ADB40409.1| S-adenosyl-methyltransferase MraW [Spirosoma linguale DSM 74]
          Length = 301

 Score =  174 bits (440), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 114/299 (38%), Positives = 161/299 (53%), Gaps = 13/299 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77
           H PVLL+  I  LN  PG   +D TFG GG+SR       G  +   D+D  A +  Q  
Sbjct: 5   HEPVLLQACIDGLNLQPGGTYVDITFGGGGHSREILNQLEGGKLFGFDQDADARANAQAI 64

Query: 78  MRDYKEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
                 + +   + F  ++ Y+     + VDG++ DLG+SS QID  +RGFS +    LD
Sbjct: 65  G---DSRLTFVASNFRNIKRYLRLYKAEQVDGILADLGISSHQIDTPERGFSTRFDADLD 121

Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM+ +   +A  VVN+    +L RILG+ GE   A   A A+V  R + P +T  DL +
Sbjct: 122 MRMNQNADKTARQVVNEYPEAELHRILGMYGEITNARTAAAALVSARSNRPLKTVNDLKA 181

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
            +Q+     K N+     + FQALRI VN E++ L + L      LK GG L+V+S+HSL
Sbjct: 182 ALQRLAPRGKENKYF--AQVFQALRIEVNEELQALEEFLEQVPDILKPGGRLVVMSYHSL 239

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           EDRLVK F      +    + +  ++  P   QSIT+K V  T E++A N R+RSAKLR
Sbjct: 240 EDRLVKNFINKGKFQGEVEKDLFGNDLKP--LQSITRKPVEATPEEIARNPRARSAKLR 296


>gi|237738955|ref|ZP_04569436.1| S-adenosyl-methyltransferase mraW [Fusobacterium sp. 2_1_31]
 gi|229423555|gb|EEO38602.1| S-adenosyl-methyltransferase mraW [Fusobacterium sp. 2_1_31]
          Length = 320

 Score =  174 bits (440), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 105/309 (33%), Positives = 174/309 (56%), Gaps = 12/309 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+PVL  + +  L   P  V +D T G G +S    +  S+   ++++D+D  A+   ++
Sbjct: 15  HIPVLYYETLDNLVINPDGVYIDCTLGGGSHSEGILERLSDKGLLLSIDQDSNAIEYSKK 74

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  Y  ++ + +  F  +       G   VDG++ D+GVSS Q+D  +RGFS++    L
Sbjct: 75  RLEKYASKWKVLKGNFENIDTLAYMAGIDKVDGILMDIGVSSKQLDEAERGFSYRYDVKL 134

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+    +SA DVVN  + ++L+RI+   GEE+ A +IA  I + R+  P  TT +L 
Sbjct: 135 DMRMNTDQKLSAYDVVNTYSEEELSRIIFEYGEERFARKIAKLICENRKIKPITTTFELV 194

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +LI++   + +    HPA ++FQA+RI VN E+E L   +  A + LK GG L +++FHS
Sbjct: 195 ALIRRA--YPERASKHPAKKTFQAIRIEVNRELEVLENAMSKAVELLKVGGRLGIITFHS 252

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRSAK 310
           LEDR+VK  F   +      +  IP      V  F+ IT+K ++P ++++  N R+ S+K
Sbjct: 253 LEDRIVKNKFKDLATACKCPKD-IPICMCGGVKKFEIITRKPIIPVEDELKNNNRAHSSK 311

Query: 311 LRAGMRTVE 319
           LR   R ++
Sbjct: 312 LRILERILD 320


>gi|282878018|ref|ZP_06286826.1| S-adenosyl-methyltransferase MraW [Prevotella buccalis ATCC 35310]
 gi|281299853|gb|EFA92214.1| S-adenosyl-methyltransferase MraW [Prevotella buccalis ATCC 35310]
          Length = 312

 Score =  174 bits (440), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 115/305 (37%), Positives = 169/305 (55%), Gaps = 19/305 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVS---- 72
           HVPVLL++ +  LN  P  + +D TFG GG+S    + +G N  + + D+D  A      
Sbjct: 10  HVPVLLQESVEGLNIQPDGIYVDVTFGGGGHSMQILRQLGENGHLFSFDQDLDAEKNIPQ 69

Query: 73  CGQETMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
            G E ++  ++ F+  ++ F  L++   Y   + +DG++ DLGVSS   D   RGFSF+ 
Sbjct: 70  AGNELLQ--QDNFTFVRSNFRYLKNWMRYYEIEQIDGLLADLGVSSHHFDDESRGFSFRF 127

Query: 130 SGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM+  + I+A+DVVN  + + L  +  + GE K A RIA  +VK R      TT
Sbjct: 128 DAPLDMRMNKTASITAADVVNTYSEERLADVFYLYGELKNARRIASLLVKARTEEMIVTT 187

Query: 189 QDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           QD    IQ T   F +        + FQALRI VN+E+E L + L  A++ L+ GG L V
Sbjct: 188 QDF---IQATAPLFKREREKKDMAKLFQALRIEVNHEMESLKEMLEGAKQLLRPGGRLSV 244

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +++HSLEDR+VK    + + +    +        P  F  I KKV+VP +++   N RSR
Sbjct: 245 ITYHSLEDRIVKNMMKTGNVEGKMTQDFFGKITTP--FSLINKKVIVPAEDEQQRNPRSR 302

Query: 308 SAKLR 312
           SAKLR
Sbjct: 303 SAKLR 307


>gi|323466809|gb|ADX70496.1| Ribosomal RNA small subunit methyltransferase H [Lactobacillus
           helveticus H10]
          Length = 349

 Score =  174 bits (440), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 116/311 (37%), Positives = 171/311 (54%), Gaps = 19/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76
           H  VLL + I  L P  G + +DATFG GG+++   S  + G+ ++  D+D +A+   + 
Sbjct: 39  HTSVLLHETIDNLKPKNGGLYVDATFGGGGHAKYLLSKIETGT-LVGFDQDEYAIKSAEL 97

Query: 77  TMRDY-----KEQFSLFQATFSQL-QDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSF 127
              D      + +  L    FS L QD V      G+DG+ +DLGVSS Q D  DRGFS+
Sbjct: 98  NFADLLQPDSEPRLKLVHDNFSNLEQDLVKLGYSDGIDGIYYDLGVSSPQFDQADRGFSY 157

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           + +  LDMRM  S    A  +VN  + K+L  IL   G+EK + +IAH IV+RR+  P  
Sbjct: 158 RYNARLDMRMDQSQDTDAYQLVNTLSQKELADILYQYGDEKFSRQIAHRIVERRKDKPIV 217

Query: 187 TTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           TT  L  +I++ +  +++    HPA +SFQALR+ VN+E++ L   L  A + L+ GG +
Sbjct: 218 TTFQLVDIIKEAIPAYARRTGGHPAKKSFQALRVAVNHELDVLQASLEEAIRILRPGGRI 277

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            V++F S ED++VKK F   S +V   R M  +P +  P +     K +   T E +  N
Sbjct: 278 SVITFQSHEDKIVKKIFKKYS-EVEVPRGMPFVPDDMKPTLRLENRKPITASTSE-LENN 335

Query: 304 RRSRSAKLRAG 314
            RS SAKLR  
Sbjct: 336 NRSHSAKLRVA 346


>gi|309776027|ref|ZP_07671019.1| S-adenosyl-methyltransferase MraW [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308916309|gb|EFP62057.1| S-adenosyl-methyltransferase MraW [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 311

 Score =  174 bits (440), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 115/303 (37%), Positives = 166/303 (54%), Gaps = 11/303 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77
           H  VLL++ I  L      + +D T G GG+S          ++ A DRD  A+   +E 
Sbjct: 4   HYSVLLQESIDNLAIRSDGIYVDGTLGRGGHSAEILARIPQGHLYAFDRDASAIEESRER 63

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +       +L  + FS ++  +  +GV   DG+V DLGVSS Q D   RGFS++   PLD
Sbjct: 64  LTRIGSNVTLIHSNFSNVKSELEARGVTGIDGMVLDLGVSSPQFDEAQRGFSYRFDAPLD 123

Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM  S  +SA  VVN+   ++L RI    GEE  A +IA  I K R++ P +TT +L  
Sbjct: 124 MRMDQSQQLSAYQVVNEWEYQELVRIFFQFGEESFAKQIARKIEKARETKPIETTLELVD 183

Query: 194 LIQKTVYFSK--NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           +I K+   +K  N + HPA + FQA+RI VN+E+ EL   LR A   L  GG L V+SF 
Sbjct: 184 VI-KSALPAKVLNKKGHPAKKVFQAIRIAVNDELGELQMVLRDALALLHVGGRLCVISFQ 242

Query: 252 SLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK  F + S      + +  +P +   A ++ + KK +  T++++  N RS SA
Sbjct: 243 SLEDRIVKDTFVACSKPKQYDKRLPILPQDMEEAPYRLVNKKPITATEDELRENMRSHSA 302

Query: 310 KLR 312
           KLR
Sbjct: 303 KLR 305


>gi|116513827|ref|YP_812733.1| S-adenosyl-methyltransferase MraW [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|116093142|gb|ABJ58295.1| SAM-dependent methyltransferase for cell envelope biogenesis
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
          Length = 305

 Score =  174 bits (440), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 109/302 (36%), Positives = 169/302 (55%), Gaps = 16/302 (5%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETM---- 78
           + + I  L P  G   +DATFG GG++R   +     N+I  D+D +A+   Q       
Sbjct: 1   MHETIDNLAPQSGGTYVDATFGGGGHARYLLRKLDKGNLIGFDQDQYAIDTAQSNFAAFL 60

Query: 79  -RDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
             D + +  L    FS L++ +      G+DG+ +DLGVSS Q+D  +RGFS++    LD
Sbjct: 61  KEDSQPRLQLVHNNFSHLKEELAKLGISGIDGIYYDLGVSSPQLDQAERGFSYRFDARLD 120

Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM  S    A  +VNQ + K L  +L   G+EK + +IA  IV+RR+  P +TT +L  
Sbjct: 121 MRMDQSQDFDAYQLVNQYDQKQLADVLYRYGDEKFSRQIARKIVERRRGKPIETTFELVE 180

Query: 194 LIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +I++ +  +   R  HPA +SFQA+R+ VN+E++ L   L  A   L  GG + V++F S
Sbjct: 181 IIKEAIPAAARRRGGHPAKKSFQAIRVEVNHELDVLRASLEEAISLLNPGGRISVITFQS 240

Query: 253 LEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           LED++VK+ F   S +V   R M  +P    P + + + +K +  ++E++A N RS SAK
Sbjct: 241 LEDKIVKQTFKKYS-EVEIPRGMPVVPEGIKPTL-RLVNRKSITASEEELAENNRSHSAK 298

Query: 311 LR 312
           LR
Sbjct: 299 LR 300


>gi|294784023|ref|ZP_06749345.1| S-adenosyl-methyltransferase MraW [Fusobacterium sp. 1_1_41FAA]
 gi|294479835|gb|EFG27614.1| S-adenosyl-methyltransferase MraW [Fusobacterium sp. 1_1_41FAA]
          Length = 314

 Score =  174 bits (440), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 105/309 (33%), Positives = 174/309 (56%), Gaps = 12/309 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+PVL  + +  L   P  V +D T G G +S    +  S+   ++++D+D  A+   ++
Sbjct: 9   HIPVLYYETLDNLVINPDGVYIDCTLGGGSHSEGILERLSDKGLLLSIDQDSNAIEYSKK 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  Y  ++ + +  F  +       G   VDG++ D+GVSS Q+D  +RGFS++    L
Sbjct: 69  RLEKYASKWKVLKGNFENIDTLAYMAGIDKVDGILMDIGVSSKQLDEAERGFSYRYDVKL 128

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+    +SA DVVN  + ++L+RI+   GEE+ A +IA  I + R+  P  TT +L 
Sbjct: 129 DMRMNTEQKLSAYDVVNTYSEEELSRIIFEYGEERFARKIAKLICENRKIKPITTTFELV 188

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +LI++   + +    HPA ++FQA+RI VN E+E L   +  A + LK GG L +++FHS
Sbjct: 189 ALIRRA--YPERASKHPAKKTFQAIRIEVNRELEVLENAMSKAVELLKVGGRLGIITFHS 246

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRSAK 310
           LEDR+VK  F   +      +  IP      V  F+ IT+K ++P ++++  N R+ S+K
Sbjct: 247 LEDRIVKNKFKDLATACKCPKD-IPICMCGGVKKFEIITRKPIIPIEDELKNNNRAHSSK 305

Query: 311 LRAGMRTVE 319
           LR   R ++
Sbjct: 306 LRILERILD 314


>gi|182417987|ref|ZP_02949294.1| S-adenosyl-methyltransferase MraW [Clostridium butyricum 5521]
 gi|237667344|ref|ZP_04527328.1| S-adenosyl-methyltransferase MraW [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|182378158|gb|EDT75693.1| S-adenosyl-methyltransferase MraW [Clostridium butyricum 5521]
 gi|237655692|gb|EEP53248.1| S-adenosyl-methyltransferase MraW [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 310

 Score =  174 bits (440), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 108/303 (35%), Positives = 167/303 (55%), Gaps = 12/303 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           HV VLL + I  LN     + +D T G  G+S    K  S    +I +D+D  A+   +E
Sbjct: 5   HVSVLLNECIDGLNIKEDGIYVDCTLGGAGHSSHILKHLSKNGLLIGIDQDTDALKAAKE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++DY +      + F  +   + + G   VDG++ DLGVSS Q+D  +RGFS+ +  PL
Sbjct: 65  RLKDY-DNVKYVHSNFYNIDSILNELGIEKVDGILMDLGVSSYQLDNAERGFSYMQDAPL 123

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  +  SA  ++N  + ++L +I+   GEEK A RIA+ IV RR   P +TT +L 
Sbjct: 124 DMRMNRDNDFSAYSIINDYSEEELYKIIRDYGEEKFAKRIANFIVNRRAEKPIETTFELV 183

Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  +   ++    HPA R+FQA+RI VN+E++ L + +      L   G + +++FH
Sbjct: 184 DIIKAAIPAKARREGPHPAKRTFQAIRIEVNSELKILNKTIEDGVNRLNKDGRMAIITFH 243

Query: 252 SLEDRLVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK  F          R   M      P V + + KK + P++E++  N RSRSA
Sbjct: 244 SLEDRIVKLKFRELENPCTCPREFPMCICGKKPLV-KVLNKKGIAPSKEEIEENPRSRSA 302

Query: 310 KLR 312
           K+R
Sbjct: 303 KVR 305


>gi|157364289|ref|YP_001471056.1| S-adenosyl-methyltransferase MraW [Thermotoga lettingae TMO]
 gi|262825835|sp|A8F758|RSMH_THELT RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|157314893|gb|ABV33992.1| S-adenosyl-methyltransferase MraW [Thermotoga lettingae TMO]
          Length = 292

 Score =  174 bits (440), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 120/308 (38%), Positives = 174/308 (56%), Gaps = 32/308 (10%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77
           HVPV++++V++  +   G V LD T GAGG+S +  +   GS VI +D D   +S  ++ 
Sbjct: 5   HVPVMVKEVLSYFSNLRG-VFLDCTVGAGGHSEAILENIKGSVVIGIDVDEEILSVAKQR 63

Query: 78  MRDYKEQ--FSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           ++ Y+ +    L +AT+ + Q  +     K V+G++ DLGVS++Q+  G+RGF+F   GP
Sbjct: 64  LKKYESEGRAKLLKATYVEAQRVLSQLGVKAVNGIIMDLGVSTLQLMKGERGFAFSSDGP 123

Query: 133 LDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQ-ASRIAHAIVKRRQSAPFQTTQD 190
           LDMRM     ++A D+VN      L RI    GEEK+ A RIA  IVK R   P +TT  
Sbjct: 124 LDMRMDKTQRLTAYDIVNFWQENQLRRIFFEYGEEKRYAGRIARFIVKNR---PVETTAK 180

Query: 191 LSSLIQKTVYFSKNN--RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L  +I + +   +    R H ATR FQA+RI VNNE+E L   L      L   G +IV+
Sbjct: 181 LVEVIARALPEKERRFRRRHFATRVFQAIRIAVNNELENLRNFLVQVPDILNQNGRIIVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDR+VK+ F  RS + + V               +T+K V P+ E+V  N ++RS
Sbjct: 241 SFHSLEDRIVKEAF--RSIQELDV---------------LTRKPVRPSLEEVRENPKARS 283

Query: 309 AKLRAGMR 316
           AK+R   R
Sbjct: 284 AKMRIAER 291


>gi|313206538|ref|YP_004045715.1| s-adenosyl-methyltransferase mraw [Riemerella anatipestifer DSM
           15868]
 gi|312445854|gb|ADQ82209.1| S-adenosyl-methyltransferase MraW [Riemerella anatipestifer DSM
           15868]
 gi|315023521|gb|EFT36525.1| S-adenosyl-methyltransferase mraW [Riemerella anatipestifer RA-YM]
 gi|325336013|gb|ADZ12287.1| Predicted S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [Riemerella anatipestifer
           RA-GD]
          Length = 297

 Score =  173 bits (439), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 118/306 (38%), Positives = 172/306 (56%), Gaps = 19/306 (6%)

Query: 20  HVPVLL-EKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCGQ 75
           H  VLL E V AL+  A G V +D TFG GG+SR      S+       D+D  A+   +
Sbjct: 3   HQSVLLKESVDALVLNADG-VYVDCTFGGGGHSREIVSRLSSAGRHFGFDQDLDAL---E 58

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             + D  E+F++    F  L++ +   GV   DG++ DLGVSS Q D  +RGFS +   P
Sbjct: 59  NKLDD--ERFTIINQNFRFLENSLMLYGVTQVDGILADLGVSSHQFDAAERGFSTRSDAP 116

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+   G++A  VVN+   + L  I    GE ++A R+A  +V  R+S P +TT+DL
Sbjct: 117 LDMRMNVMQGLNAQKVVNEYEEEHLADIFYHYGELREARRLARELVHYRKSKPIKTTEDL 176

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            S+  K +   K N+     + FQA+RI VN E+E L + L  A + LK GG L+V+S+H
Sbjct: 177 KSVF-KYIPPHKQNKFF--AQLFQAIRIEVNQELEALKEMLEQAYRILKPGGRLVVISYH 233

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDRLVK+F   ++G             +   F+ +  K  VPT+E++  N R+RSAK+
Sbjct: 234 SLEDRLVKRFL--KNGMFDGEPERDIYGNYTKAFELLQSKAFVPTEEEIEANSRARSAKM 291

Query: 312 RAGMRT 317
           R G++ 
Sbjct: 292 RVGIKV 297


>gi|311063958|ref|YP_003970683.1| S-adenosyl-methyltransferase [Bifidobacterium bifidum PRL2010]
 gi|310866277|gb|ADP35646.1| MraW S-adenosyl-methyltransferase [Bifidobacterium bifidum PRL2010]
          Length = 370

 Score =  173 bits (439), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 114/306 (37%), Positives = 168/306 (54%), Gaps = 15/306 (4%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74
           H PVLLE+ ++L+ PA   PG + +D T G  G++ +F K    + V+ +DRD  A++  
Sbjct: 8   HQPVLLEQCVSLVAPALQDPGSIAVDCTLGLAGHTIAFLKAAPQARVLGIDRDAEALAMA 67

Query: 75  QETM--RDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQK 129
            E +      ++F    A F      + D+G+D    V  DLG+SS+QID  DRGFS+  
Sbjct: 68  TERIAGEGLSDRFIPVHAAFDAFGQVLDDQGIDRVNAVFMDLGLSSLQIDETDRGFSYAH 127

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM  S  ++A  V+ +   ++L RI    GEE+ + +IA  IV+RR   P  T+
Sbjct: 128 DAPLDMRMDVSQPLTAQCVLAEYPERELVRIFRAYGEERFSRQIAREIVRRRAQEPLTTS 187

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ L+ + V  +     +PA R FQALRI VN E+++LA  L      L   G L+V 
Sbjct: 188 AQLNRLVDEVVPQAHRPAGNPAKRVFQALRIEVNGELDKLAGTLPQIACRLAPNGRLVVE 247

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           S+HSLED+ VK F  +   +V A   M  IP +A P  F  +T+  V    +++A N RS
Sbjct: 248 SYHSLEDKTVKSFM-NEGLRVDAPADMPVIPDDAQP-FFAPLTRGAVQAGPDEIAANPRS 305

Query: 307 RSAKLR 312
            S +LR
Sbjct: 306 ASVRLR 311


>gi|160944903|ref|ZP_02092130.1| hypothetical protein FAEPRAM212_02419 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444087|gb|EDP21091.1| hypothetical protein FAEPRAM212_02419 [Faecalibacterium prausnitzii
           M21/2]
          Length = 321

 Score =  173 bits (439), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 112/304 (36%), Positives = 167/304 (54%), Gaps = 12/304 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-----KMGSNVIALDRDPFAVSC 73
           +H+PVLL + +  L   P    LD T G  G+SR          G  +I+LD+DP AV  
Sbjct: 15  EHIPVLLNECLTGLAIDPAGTYLDGTAGGAGHSRQIALRLDAAKGGRLISLDQDPDAVQT 74

Query: 74  GQETMRDYKEQFSLFQATF---SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +  +       ++ Q  F    Q  + +  + ++G + DLGVSS Q+D   RGFS++  
Sbjct: 75  ARSRLAGLPA--TVVQINFRYAGQALEQLGIEKINGALLDLGVSSHQLDDAARGFSYRAD 132

Query: 131 GPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            PLDMRMS  G +A+D+VN  + ++L RIL   GEE  A +IA  IV+ R++AP  TT  
Sbjct: 133 APLDMRMSQQGETAADLVNTESREELARILRDYGEEPYAWQIAGKIVEARETAPILTTLQ 192

Query: 191 LSSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ ++   +  ++  +  +P+ R+FQALRI VN+E++ L +GL +    L  GG L V++
Sbjct: 193 LADIVASAMPPAERRKNKNPSRRTFQALRIAVNHELDALEEGLDTIFDHLAPGGRLCVIT 252

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDRLVK  F   S          +      A  + IT+K +    +++  NRRSRS
Sbjct: 253 FHSLEDRLVKNKFRRWSTACTCPPEFPVCVCGGKAKAKLITRKPIEADTQELEENRRSRS 312

Query: 309 AKLR 312
           A LR
Sbjct: 313 AHLR 316


>gi|29840135|ref|NP_829241.1| S-adenosyl-methyltransferase MraW [Chlamydophila caviae GPIC]
 gi|33301363|sp|Q823N6|RSMH_CHLCV RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|29834483|gb|AAP05119.1| S-adenosyl-methyltransferase MraW [Chlamydophila caviae GPIC]
          Length = 297

 Score =  173 bits (439), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 113/306 (36%), Positives = 166/306 (54%), Gaps = 24/306 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALD---RDPFAVSCGQE 76
           H+PVL+ + ++  +    +   D T GAGG++ +F     ++I+ D   RD  A+S  +E
Sbjct: 7   HIPVLVNECLSWFSDRNPRSFCDVTVGAGGHAEAFLSTYPSIISYDGSDRDATALSLARE 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ-KSGPLDM 135
            +  + ++  L  A+F  L     +   DG++ DLGVSSMQ+D   RGFSFQ +   LDM
Sbjct: 67  RLEKFGDRVHLHHASFEDLAQDPKENVYDGILADLGVSSMQLDTLSRGFSFQGEDHDLDM 126

Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM  S GI+AS+V+N    ++L +I    GEE     +A+AIV  R+     T +DL   
Sbjct: 127 RMDTSQGITASEVLNTLREEELGKIFREYGEEPHWKNVANAIVHFRRRKKIITVKDLKEA 186

Query: 195 IQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
             +    +    +IHP T  FQALR++VN E  +L   L SA + L   G L+++SF S 
Sbjct: 187 TARVFPSYRLRKKIHPLTLIFQALRVYVNQEDVQLKVLLESAMRWLAPKGRLVIISFCSS 246

Query: 254 EDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           EDR VK FF  A +SG                + + +TKKVV+PT E++  N R RSAKL
Sbjct: 247 EDRPVKWFFREAEKSG----------------LGKILTKKVVMPTYEEIRRNPRCRSAKL 290

Query: 312 RAGMRT 317
           R   +T
Sbjct: 291 RCFEKT 296


>gi|228477291|ref|ZP_04061929.1| S-adenosyl-methyltransferase MraW [Streptococcus salivarius SK126]
 gi|228251310|gb|EEK10481.1| S-adenosyl-methyltransferase MraW [Streptococcus salivarius SK126]
          Length = 316

 Score =  173 bits (439), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 112/309 (36%), Positives = 170/309 (55%), Gaps = 14/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           HV VLL + + +L+  P  + +DAT G  G+S       S   ++   D+D  A+   Q 
Sbjct: 7   HVTVLLHETVDMLDIKPDGIYVDATLGGAGHSSYLLSQLSEKGHLYCFDQDQKAIDNAQV 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            ++DY  K   +  +  F  L+  +   GV   DG+++DLGVSS Q+D  DRGFS+++  
Sbjct: 67  RLKDYIDKGMVTFIKDNFRNLKSNLEALGVSEIDGILYDLGVSSPQLDERDRGFSYKQDA 126

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM+  + ++A DVVN     DL RI    GE+K + +IA  I + RQ  P +TT +
Sbjct: 127 KLDMRMNEEASLTAYDVVNTYPYNDLVRIFFKYGEDKFSKQIARKIEQARQVKPIETTTE 186

Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L+ +I K+   +K    + HPA + FQA+RI VN+E+    + ++ A   L   G + V+
Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQEALDLLAVDGRISVI 245

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F   S   V      IP    P V   + +K ++P+QE++  N RS 
Sbjct: 246 TFHSLEDRLTKQLFKEASTVDVPKGLPFIPEELQPKV-ALVNRKPILPSQEELEANNRSH 304

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 305 SAKLRVAKK 313


>gi|53711604|ref|YP_097596.1| S-adenosyl-methyltransferase MraW [Bacteroides fragilis YCH46]
 gi|253564345|ref|ZP_04841802.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 3_2_5]
 gi|115311579|sp|Q64ZL4|RSMH_BACFR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|52214469|dbj|BAD47062.1| S-adenosyl-methyltransferase MraW [Bacteroides fragilis YCH46]
 gi|251948121|gb|EES88403.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 3_2_5]
 gi|301161374|emb|CBW20914.1| putative S-adenosyl-methyltransferase [Bacteroides fragilis 638R]
          Length = 304

 Score =  173 bits (439), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 109/300 (36%), Positives = 167/300 (55%), Gaps = 16/300 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HVPVLL++ +  +N +P    +D TFG GG+SR        G  ++  D+D       + 
Sbjct: 9   HVPVLLKESVDAMNISPDGTYVDVTFGGGGHSREILSRLGDGGRLLGFDQDE---DAERN 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYV--PDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + D    F+  ++ F  L +++   D G VD ++ DLGVSS   D  +RGFSF+  G L
Sbjct: 66  IVND--PHFTFVRSNFRYLHNFLRYHDIGEVDAILADLGVSSHHFDDSERGFSFRFDGKL 123

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  +GI+A+DVVN    + L  I  + GE K + ++A  IVK R     +T  +  
Sbjct: 124 DMRMNKRAGITAADVVNTYEEERLADIFYLYGELKNSRKLASVIVKARTGQKIETIGEFL 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I+    F +        + FQALRI VN E+E L + L +A +ALK GG L+V+++HS
Sbjct: 184 EIIKP--LFGREREKKELAKVFQALRIEVNQEMEALKEMLMAATEALKPGGRLVVITYHS 241

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK    + + +  A +    +   P  F+ +  KV+VP ++++  N RSRSAKLR
Sbjct: 242 LEDRMVKNIMKTGNVEGKATQDFFGNLQTP--FRLVNNKVIVPDEDEITRNPRSRSAKLR 299


>gi|68565437|sp|Q5M2U6|RSMH_STRT2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 316

 Score =  173 bits (439), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 111/309 (35%), Positives = 171/309 (55%), Gaps = 14/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           HV VLL + + +L+  P  + +DAT G  G+S       S   ++   D+D  A+   Q 
Sbjct: 7   HVTVLLHETVDMLDIKPDGIYVDATLGGAGHSSYLLSQLSEKGHLYCFDQDQKAIDNAQV 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            ++DY  K   +  +  F  L+  +   GV   DG+++DLGVSS Q+D  +RGFS+++  
Sbjct: 67  RLKDYIDKGMVTFIKDNFRNLKSNLEALGVSEIDGILYDLGVSSPQLDERERGFSYKQDA 126

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM+  + ++A DVVN     DL RI    GE+K + +IA  I + RQ  P +TT +
Sbjct: 127 KLDMRMNEEASLTAYDVVNTYPYNDLVRIFFKYGEDKFSKQIARKIEQARQVKPIETTTE 186

Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L+ +I K+   +K    + HPA + FQA+RI VN+E+    + ++ A   L   G + V+
Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQEALDLLAVNGRISVI 245

Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F   S   V      IP +  P V   + +K ++P+QE++  N RS 
Sbjct: 246 TFHSLEDRLTKQLFKEASTADVPKGLPFIPEDLQPKV-ALVNRKPILPSQEELEANNRSH 304

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 305 SAKLRVAKK 313


>gi|303259429|ref|ZP_07345406.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           SP-BS293]
 gi|303261184|ref|ZP_07347133.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           SP14-BS292]
 gi|303263511|ref|ZP_07349434.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae BS397]
 gi|303265804|ref|ZP_07351702.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae BS457]
 gi|303267765|ref|ZP_07353567.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae BS458]
 gi|302638021|gb|EFL68507.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           SP14-BS292]
 gi|302639363|gb|EFL69821.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           SP-BS293]
 gi|302642461|gb|EFL72806.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae BS458]
 gi|302644712|gb|EFL74961.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae BS457]
 gi|302647284|gb|EFL77508.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae BS397]
          Length = 316

 Score =  173 bits (439), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 110/309 (35%), Positives = 176/309 (56%), Gaps = 14/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           HV VLL + I +L+  P  + +DAT G  G+S       S   ++ A D+D  A+   Q+
Sbjct: 7   HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQK 66

Query: 77  TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y E+   +  +  F  LQ  + + GV   DG+ +DLGVSS Q+D  +RGFS++K  
Sbjct: 67  RLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDA 126

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+  + ++A +VVN  +  DL RI    GE+K + +IA  I + R+  P +TT +
Sbjct: 127 PLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQVREVKPIETTTE 186

Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L+ +I K+   +K    + HPA + FQA+RI VN+E+    + ++ A + L   G + V+
Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMEMLALDGRISVI 245

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F   S  +V      IP +   +  + +++K ++P+ E++  N RS 
Sbjct: 246 TFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDL-KSKMELVSRKPILPSAEELEANNRSH 304

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 305 SAKLRVARK 313


>gi|254415023|ref|ZP_05028786.1| S-adenosyl-methyltransferase MraW [Microcoleus chthonoplastes PCC
           7420]
 gi|196178170|gb|EDX73171.1| S-adenosyl-methyltransferase MraW [Microcoleus chthonoplastes PCC
           7420]
          Length = 291

 Score =  173 bits (439), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 116/301 (38%), Positives = 159/301 (52%), Gaps = 26/301 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H  VL +++IA L   PG   LDAT G GG+S        +V     D  A +      R
Sbjct: 12  HRSVLSQELIAGLAIRPGGHYLDATVGGGGHSELILSAAPDVRVTAIDQDAQAIAAAQTR 71

Query: 80  --DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
              Y ++   ++  F   Q   P+   DG++ DLGVSS Q+D  DRGFSF+   PLDMRM
Sbjct: 72  LASYGDRIQFWRGNFVDYQP--PESLFDGIIADLGVSSAQLDIPDRGFSFRHQAPLDMRM 129

Query: 138 SC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
                ++A+ ++N  +   L   +   GEE+ + RIA AIV+RR   PF+TT  L+  I 
Sbjct: 130 DQRQSLTAAQIINHWDETQLANTIYEYGEERLSRRIARAIVERR---PFETTTQLAEAIA 186

Query: 197 KTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           ++V    +  RIHPATR+FQALRI VN E+  L + L  A + LK GG + ++SFHSLED
Sbjct: 187 RSVPKKYRYGRIHPATRTFQALRIAVNQELSSLEKFLNCAPRWLKPGGRIGIISFHSLED 246

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           RLVK     R   ++ V               +TKK + P   +   N R+RSAKLR   
Sbjct: 247 RLVKHHL--RDSPILRV---------------LTKKPITPQPTERDENPRARSAKLRLAE 289

Query: 316 R 316
           R
Sbjct: 290 R 290


>gi|55823597|ref|YP_142038.1| S-adenosyl-methyltransferase MraW [Streptococcus thermophilus
           CNRZ1066]
 gi|55739582|gb|AAV63223.1| S-adenosylmethionine-dependent methyltransferase, putative
           [Streptococcus thermophilus CNRZ1066]
          Length = 354

 Score =  173 bits (439), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 114/323 (35%), Positives = 176/323 (54%), Gaps = 19/323 (5%)

Query: 6   CKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVI 62
            K M++  HH     V VLL + + +L+  P  + +DAT G  G+S       S   ++ 
Sbjct: 36  IKIMTNEFHH-----VTVLLHETVDMLDIKPDGIYVDATLGGAGHSSYLLSQLSEKGHLY 90

Query: 63  ALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQ 117
             D+D  A+   Q  ++DY  K   +  +  F  L+  +   GV   DG+++DLGVSS Q
Sbjct: 91  CFDQDQKAIDNAQVRLKDYIDKGMVTFIKDNFRNLKSNLEALGVSEIDGILYDLGVSSPQ 150

Query: 118 IDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
           +D  +RGFS+++   LDMRM+  + ++A DVVN     DL RI    GE+K + +IA  I
Sbjct: 151 LDERERGFSYKQDAKLDMRMNEEASLTAYDVVNTYPYNDLVRIFFKYGEDKFSKQIARKI 210

Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRS 234
            + RQ  P +TT +L+ +I K+   +K    + HPA + FQA+RI VN+E+    + ++ 
Sbjct: 211 EQARQVKPIETTTELAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQE 269

Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVV 293
           A   L   G + V++FHSLEDRL K+ F   S   V      IP +  P V   + +K +
Sbjct: 270 ALDLLAVDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPEDLQPKV-ALVNRKPI 328

Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316
           +P+QE++  N RS SAKLR   +
Sbjct: 329 LPSQEELEANNRSHSAKLRVAKK 351


>gi|296110609|ref|YP_003620990.1| cell division protein MraW [Leuconostoc kimchii IMSNU 11154]
 gi|295832140|gb|ADG40021.1| cell division protein MraW [Leuconostoc kimchii IMSNU 11154]
          Length = 313

 Score =  173 bits (439), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 107/305 (35%), Positives = 165/305 (54%), Gaps = 10/305 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76
           +HV VLL + +ALLN  P  + +DAT G GG++    K      + + D+D  A+   +E
Sbjct: 5   EHVTVLLHEAVALLNIKPDGLYVDATLGGGGHTGEILKQLTSGTLYSFDQDDLAIRYNRE 64

Query: 77  TMRDYKE--QFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
              D  +  +  L    F  L   + ++GV   DG+++DLGVSS+Q D G RGFS+    
Sbjct: 65  QFADDIQAGKLVLIHQNFRTLTSALAERGVTQVDGIIYDLGVSSVQFDDGQRGFSYNYDA 124

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM     ++A  +VN  +  +L RIL   GE++   +IA  I   R++ P  TT +
Sbjct: 125 DLDMRMDQRQNLTAKIIVNDWSFHELLRILSRYGEDRFPKQIARKIESHREAQPINTTFE 184

Query: 191 LSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I++ +   ++    HPA R+FQALRI VN+E+  L   L  A   L   G +  ++
Sbjct: 185 LVDIIKEAIPAPARRKGGHPAKRTFQALRIAVNDELGALEDSLTQAIALLAPSGRISAIT 244

Query: 250 FHSLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           F SLEDRLVK+ F  + S   + V   +      A +  +T+K ++P++ ++  N RS S
Sbjct: 245 FQSLEDRLVKQMFREKTSTPELPVGLPVLPGQFEADYTLLTRKPILPSEHEMTINHRSES 304

Query: 309 AKLRA 313
           AKLR 
Sbjct: 305 AKLRG 309


>gi|256841653|ref|ZP_05547159.1| MraW methylase [Parabacteroides sp. D13]
 gi|301310871|ref|ZP_07216800.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 20_3]
 gi|256736547|gb|EEU49875.1| MraW methylase [Parabacteroides sp. D13]
 gi|300830934|gb|EFK61575.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 20_3]
          Length = 305

 Score =  173 bits (439), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 110/301 (36%), Positives = 167/301 (55%), Gaps = 17/301 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HVPV+L + +  L+  P  + +D TFG GG+SR   K    G  +   D+D  A     E
Sbjct: 9   HVPVMLRESLEGLDIRPDGIYVDVTFGGGGHSREILKRLGSGGELYGFDQDADA-----E 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  +F+  ++ F  L +++   G    VDG++ DLGVSS   D  DRGFSF+  G 
Sbjct: 64  HNIPADPRFTFVRSNFRYLYNFMRYYGESGEVDGLLADLGVSSHHFDDKDRGFSFRFDGT 123

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+  +G +A+D+VN    + L  +  + GE K + ++A  +VK R++   +T  D 
Sbjct: 124 LDMRMNTRAGQTAADIVNNYTAEALADVFYLYGELKVSRKLASVLVKARETKKIETIGDF 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             +I+   +  K+       + FQALRI VN+E+  L + LRS  + L+ GG L+V+++H
Sbjct: 184 LEVIKP--FTGKDKEKKFLAQVFQALRIEVNDEMRALKEMLRSTLRVLRPGGRLVVITYH 241

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDRLVK F  + + +    +    +   P  F+ +  KV+VPT E+V  N RSRSAKL
Sbjct: 242 SLEDRLVKNFLKTGNFEGKCEQDFFGNVRSP--FRLVNNKVIVPTDEEVERNPRSRSAKL 299

Query: 312 R 312
           R
Sbjct: 300 R 300


>gi|224282633|ref|ZP_03645955.1| S-adenosyl-methyltransferase [Bifidobacterium bifidum NCIMB 41171]
 gi|313139792|ref|ZP_07801985.1| S-adenosyl-methyltransferase [Bifidobacterium bifidum NCIMB 41171]
 gi|313132302|gb|EFR49919.1| S-adenosyl-methyltransferase [Bifidobacterium bifidum NCIMB 41171]
          Length = 370

 Score =  173 bits (439), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 113/306 (36%), Positives = 168/306 (54%), Gaps = 15/306 (4%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74
           H PVLLE+ ++L+ PA   PG + +D T G  G++ +F K    + V+ +DRD  A++  
Sbjct: 8   HQPVLLEQCVSLVAPALQDPGSIAVDCTLGLAGHTIAFLKAAPQARVLGIDRDAEALAMA 67

Query: 75  QETM--RDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQK 129
            E +      ++F    A F      + D+G+D    V  DLG+SS+QID  DRGFS+  
Sbjct: 68  TERIAGEGLSDRFIPVHAAFDAFGQVLDDQGIDRVNAVFMDLGLSSLQIDETDRGFSYAH 127

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM  S  ++A  V+ +   ++L RI    GEE+ + +IA  IV+RR   P  T+
Sbjct: 128 DAPLDMRMDVSQPLTAQRVLAEYPERELVRIFRAYGEERFSRQIAREIVRRRAQEPLTTS 187

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ L+ + V  +     +PA R FQALRI VN E+++LA  L      L   G L+V 
Sbjct: 188 AQLNRLVDEVVPQAHRPAGNPAKRVFQALRIEVNGELDKLAGTLPQIACRLAPNGRLVVE 247

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           S+HSLED+ VK F  +   +V A   M  +P +A P  F  +T+  V    +++A N RS
Sbjct: 248 SYHSLEDKTVKSFM-NEGLRVDAPADMPVVPDDAQP-FFAPLTRGAVQAGPDEIAANPRS 305

Query: 307 RSAKLR 312
            S +LR
Sbjct: 306 ASVRLR 311


>gi|222153542|ref|YP_002562719.1| S-adenosyl-methyltransferase MraW [Streptococcus uberis 0140J]
 gi|262825652|sp|B9DV78|RSMH_STRU0 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|222114355|emb|CAR43080.1| S-adenosyl-methyltransferase MraW [Streptococcus uberis 0140J]
          Length = 316

 Score =  173 bits (439), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 110/309 (35%), Positives = 175/309 (56%), Gaps = 14/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQE 76
           H+ VLL + + +L+  P  + +DAT G  G+S     K+  N  +   D+D  A+   Q 
Sbjct: 7   HITVLLHETVDMLDIKPDGIYVDATLGGAGHSSYLLSKLNDNGHLYCFDQDQKAIDNAQV 66

Query: 77  TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            ++ Y ++   +  +A F  L+  +   GV   DG+++DLGVSS Q+D  +RGFS+++  
Sbjct: 67  FLKSYVDRGMVTFIKANFRHLKSELNALGVTEIDGILYDLGVSSPQLDERERGFSYKQDA 126

Query: 132 PLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM S + ++A  VVN    +DL RI    GE+K + +IA  I + R   P +TT +
Sbjct: 127 PLDMRMDSDAALTAYHVVNDYPFQDLVRIFFKYGEDKFSKQIARKIEQARAIKPIETTAE 186

Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L+ +I K+   +K    + HPA + FQA+RI VN+E+    + ++ A   L   G + V+
Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQEAMTMLALNGRISVI 245

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F   S   V      IP +  P  F+ +T+K ++P+QE++  N R+ 
Sbjct: 246 TFHSLEDRLTKQLFKEASTVDVPKGIPFIPEDMQPK-FELVTRKPILPSQEELLANNRAH 304

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 305 SAKLRVARK 313


>gi|257092216|ref|YP_003165857.1| S-adenosyl-methyltransferase MraW [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257044740|gb|ACV33928.1| S-adenosyl-methyltransferase MraW [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 316

 Score =  173 bits (438), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 113/305 (37%), Positives = 171/305 (56%), Gaps = 17/305 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P    +D TFG GG+SR+  +    G  ++A DRDP AV+    
Sbjct: 7   HQTVLLQEAVEALAIKPAGTYVDGTFGRGGHSRAILQRLGTGGRLLAFDRDPQAVAMASG 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVP------DKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
              +   +  +    F  L D +       ++G+DGV+ D+GVSS Q+D   RGFSF+  
Sbjct: 67  ---ETDARLLVMHERFGDLADALRRAGCAVEQGIDGVLLDIGVSSPQLDEHARGFSFRGD 123

Query: 131 GPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM +  G +A+  + +A+ +++T ++   GEE+ A +IA  IV  R      TT 
Sbjct: 124 APLDMRMDTTQGETAAQWLGRASEQEITEVIRNYGEERFAFQIAKKIVAARGERSVATTG 183

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           +L++L+++TV   +  +   ATR+FQALRI +N E+E+LA  L  A   LKAGG L+V+S
Sbjct: 184 ELAALVRQTVRTREPGQ-DAATRTFQALRIHINQELEQLALVLPQAMTVLKAGGRLVVIS 242

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           FHSLEDR+VK+F    +      R +    ++  P   + I K V     E +A N R+R
Sbjct: 243 FHSLEDRIVKRFLRDEAAPDRLPRKLPLRAADLPPPRLRLIGKPVRASAAE-IAANPRAR 301

Query: 308 SAKLR 312
           SA +R
Sbjct: 302 SAIMR 306


>gi|94994874|ref|YP_602972.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes
           MGAS10750]
 gi|94548382|gb|ABF38428.1| S-adenosyl-methyltransferase mraW [Streptococcus pyogenes
           MGAS10750]
          Length = 337

 Score =  173 bits (438), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 110/323 (34%), Positives = 177/323 (54%), Gaps = 17/323 (5%)

Query: 5   SCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NV 61
           + K M+   HH     V VLL + + +L+  P  + +DAT G  G+S       S   ++
Sbjct: 18  TIKVMTKEFHH-----VTVLLHETVDMLDIKPNGIYVDATLGGSGHSAYLLSKLSEQGHL 72

Query: 62  IALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSM 116
              D+D  A+   Q T++ Y  K Q +  +  F  L+  +   GVD   G+++DLGVSS 
Sbjct: 73  YCFDQDQKAIDNAQVTLKSYIDKGQVTFIKDNFRHLKARLTALGVDEIDGILYDLGVSSP 132

Query: 117 QIDCGDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175
           Q+D  +RGFS+++  PLDMRM   S ++A +VVN     DL +I    GE+K + +IA  
Sbjct: 133 QLDERERGFSYKQDAPLDMRMDRQSLLTAYEVVNTYPFNDLVKIFFKYGEDKFSKQIARK 192

Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRS 234
           I + R   P +TT +L+ LI+      +   + HPA + FQA+RI VN+E+    + ++ 
Sbjct: 193 IEQARAIKPIETTTELAELIKAAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQD 252

Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVV 293
           A + L   G + V++FHSLEDRL K+ F   S   V     +IP +  P  F+ +++K +
Sbjct: 253 AMELLALDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPLIPEDMKP-TFELVSRKPI 311

Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316
           +P+  ++  N+R+ SAKLR   +
Sbjct: 312 LPSHSELTANKRAHSAKLRVAKK 334


>gi|293363236|ref|ZP_06610120.1| S-adenosyl-methyltransferase MraW [Mycoplasma alligatoris A21JP2]
 gi|292553095|gb|EFF41844.1| S-adenosyl-methyltransferase MraW [Mycoplasma alligatoris A21JP2]
          Length = 302

 Score =  173 bits (438), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 117/301 (38%), Positives = 164/301 (54%), Gaps = 18/301 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQE 76
           H  VLLE+ I  LN  P  + +D T G GG+S     K+  N  +IA D+D +A+   Q 
Sbjct: 5   HYSVLLEETIKSLNLQPDGIYVDLTLGMGGHSAKILEKLNKNGMLIAFDKDDYALEISQR 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +    ++F L ++ +SQL+  + +     VDG++ DLG+SS QID  +RGFS+ K   L
Sbjct: 65  RLSSISDKFILIKSDYSQLKSQLANHNIYKVDGIIADLGISSPQIDNANRGFSYNKDAKL 124

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  S  + A  VVN  +V+ L  I     + K AS++A AI K R   P  +T  L 
Sbjct: 125 DMRMDTSQELDAEIVVNTYSVEHLRDIFLKYADVKHASQVAKAIEKNR---PIVSTMQLV 181

Query: 193 SLIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I K+ Y +   R  +PA   FQALRI VNNE+  L   L  A   LK    L +++FH
Sbjct: 182 EVI-KSAYPAALLRAKNPAKAVFQALRIEVNNELYSLKTMLDDAVSLLKTNASLSIITFH 240

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           S+EDRLVK  FAS +         IP+    A  ++   K V P+  ++  N+RSRSAKL
Sbjct: 241 SIEDRLVKHKFASLTAS------KIPAKMPIADKKTFLSKQVKPSSNEIQENKRSRSAKL 294

Query: 312 R 312
           R
Sbjct: 295 R 295


>gi|293381714|ref|ZP_06627695.1| S-adenosyl-methyltransferase MraW [Lactobacillus crispatus 214-1]
 gi|290921761|gb|EFD98782.1| S-adenosyl-methyltransferase MraW [Lactobacillus crispatus 214-1]
          Length = 315

 Score =  173 bits (438), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 116/313 (37%), Positives = 171/313 (54%), Gaps = 19/313 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQE 76
           H  VLL + I  L P  G + +DATFG GG   Y  S    G+ ++  D+D +A+   + 
Sbjct: 5   HTSVLLHETIDNLKPKNGGLYVDATFGGGGDAKYLLSKIDTGT-LVGFDQDEYAIKSAKL 63

Query: 77  TMR-----DYKEQFSLFQATFSQLQ-DYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSF 127
                   D + +  L    FS L+ D V      G+DG+ +DLGVSS Q D  DRGFS+
Sbjct: 64  NFANLLQLDSEPRLELVHDNFSNLEKDLVKLGYSDGIDGIYYDLGVSSPQFDQADRGFSY 123

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           +    LDMRM  S  + A  +VN  + K+L  IL   G+EK + +IAH IV+RR+  P  
Sbjct: 124 RYDARLDMRMDQSQDLDAYQLVNTLSQKELADILYQYGDEKFSRQIAHRIVERRREKPIA 183

Query: 187 TTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           TT +L  +I+  +  +++    HPA +SFQALR+ VN+E++ L   L  A K L+ GG +
Sbjct: 184 TTFELVDVIKDAIPAYARRTGGHPAKKSFQALRVAVNHELDVLQASLEEAIKILRPGGRI 243

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            V++F S ED++VK+ F   S +V   R M  IP    P + + +  K +V +  ++  N
Sbjct: 244 SVITFQSHEDKIVKRIFKKYS-EVEVPRGMPFIPDGMKPTL-RLVNHKPIVASTSELENN 301

Query: 304 RRSRSAKLRAGMR 316
            RS SAKLR   +
Sbjct: 302 NRSHSAKLRVAEK 314


>gi|189461555|ref|ZP_03010340.1| hypothetical protein BACCOP_02214 [Bacteroides coprocola DSM 17136]
 gi|189431761|gb|EDV00746.1| hypothetical protein BACCOP_02214 [Bacteroides coprocola DSM 17136]
          Length = 306

 Score =  173 bits (438), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 109/301 (36%), Positives = 169/301 (56%), Gaps = 18/301 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQE 76
           H+PVLL + I  +N  P  +  D TFG GG+S+   +     S++ + D+D  A    ++
Sbjct: 11  HIPVLLNESIDGMNLHPAGIYADMTFGGGGHSKEILRRMDKNSHLYSFDQDEDA----EK 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + D   +F+  ++ F  L +++   GV   D ++ DLGVSS   D  +RGFSF+  G L
Sbjct: 67  NIVD-DSRFTFVRSNFRYLHNFLRYYGVEEADAILADLGVSSHHFDDSERGFSFRFDGKL 125

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  +G++A+D+VN    + L  +  + GE K + ++A  +VK R      T  D  
Sbjct: 126 DMRMNKRAGMTAADIVNNYEEERLANVFYLYGELKNSRKLASVLVKARAQKQIVTIGDFL 185

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I+    F K        + FQALRI VN E+E L + L +A +ALK GG L+++++HS
Sbjct: 186 EIIKPL--FGKEREKKELAKVFQALRIEVNQEMEALKEMLYAATEALKPGGRLVIITYHS 243

Query: 253 LEDRLVKKFFASRSGKVMA-VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK     ++G V   V      N     F+++  KV+VP+ E++A N RSRSAKL
Sbjct: 244 LEDRIVKNLI--KTGNVEGKVEQDFFGNVQTP-FRAVNNKVIVPSDEEIARNPRSRSAKL 300

Query: 312 R 312
           R
Sbjct: 301 R 301


>gi|227535245|ref|ZP_03965294.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Lactobacillus paracasei subsp. paracasei ATCC 25302]
 gi|227187129|gb|EEI67196.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Lactobacillus paracasei subsp. paracasei ATCC 25302]
          Length = 313

 Score =  173 bits (438), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 112/303 (36%), Positives = 161/303 (53%), Gaps = 12/303 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H  VLL++  A L   P    +DAT G GG++R      +   +IA D+D  A++     
Sbjct: 6   HETVLLKEATAALAVKPAGTYVDATLGRGGHTRQILNQLTTGRLIAFDQDEAAIATVTAD 65

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
                +Q +L    F  L D +   G   VDG+++DLGVSS Q D   RGFS++   PLD
Sbjct: 66  FGTLPKQLTLVHRNFRDLTDALTTLGITEVDGILYDLGVSSPQFDDSKRGFSYRFDAPLD 125

Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM     + A  +VN+    DL RI    GEE  + +IA  I + R   P  TT  L  
Sbjct: 126 MRMDQRQTLDAKTIVNEWPYADLVRIFSRYGEEHFSKQIARRIEQARTVQPITTTFQLVE 185

Query: 194 LIQKTVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           LI+  +  +K  R   HPA + FQA+RI VN+E+  L   L  A K +  GG + V++F 
Sbjct: 186 LIKAGIP-AKARRTGGHPAKKVFQAIRIAVNDELSALESSLEQALKLINVGGRISVITFQ 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDRLVK  F   S      R +  IP++A P  ++ + +K ++P++E++  N R+ SA
Sbjct: 245 SLEDRLVKTMFKEVSSVQDVPRGLPVIPASAQPN-YRLVNRKPILPSEEELTVNHRAHSA 303

Query: 310 KLR 312
           KLR
Sbjct: 304 KLR 306


>gi|87300864|ref|ZP_01083706.1| methyltransferase [Synechococcus sp. WH 5701]
 gi|87284735|gb|EAQ76687.1| methyltransferase [Synechococcus sp. WH 5701]
          Length = 299

 Score =  173 bits (438), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 114/307 (37%), Positives = 170/307 (55%), Gaps = 32/307 (10%)

Query: 19  DHVPVLLEKVIALLNPAPGK-VILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQ 75
           DH+PVL   V+A     PG+  +LD T G GG+S        G  +I LD+DP A++   
Sbjct: 6   DHLPVLAAAVVAGFTDLPGEGTLLDVTVGGGGHSALLLAAHPGLRLIGLDQDPAALAAAA 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           E +  + ++ +L  + F+   +Y P + + GV+ DLGVSS Q+D  +RGFSF+  GPLDM
Sbjct: 66  ERLEPFADRVTLVPSNFA---NYAPSEPLVGVLADLGVSSPQLDRPERGFSFRLDGPLDM 122

Query: 136 RM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM S  G +A++++++   KDL  ++   GEE+ + RIA  IV+ R   P+  +   ++ 
Sbjct: 123 RMNSAEGETAAELMDRVEEKDLADLIYAYGEERLSRRIARRIVEAR---PWHGSSRGTAA 179

Query: 195 IQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           +   V       +++ RIH ATR+FQALRI VN+E+  L + L +A   L  GGL  V+S
Sbjct: 180 LAYLVAGCYPPKARHGRIHAATRTFQALRIAVNDELGALERLLHNAPDWLMPGGLFGVIS 239

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDR VK  F +                     + +T+K VV  +++   N RSRSA
Sbjct: 240 FHSLEDRRVKAAFLADD-----------------RLERLTRKPVVADEQEAERNPRSRSA 282

Query: 310 KLRAGMR 316
           K R   R
Sbjct: 283 KFRLARR 289


>gi|329895271|ref|ZP_08270913.1| S-adenosyl-methyltransferase MraW [gamma proteobacterium IMCC3088]
 gi|328922393|gb|EGG29736.1| S-adenosyl-methyltransferase MraW [gamma proteobacterium IMCC3088]
          Length = 305

 Score =  173 bits (438), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 118/305 (38%), Positives = 170/305 (55%), Gaps = 11/305 (3%)

Query: 20  HVPVLLEKVI-ALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
           H  VLLE+ +  L+ P  G+ + D TFG GG++R+   + ++   V+ +D+DP A+   Q
Sbjct: 2   HESVLLEESLQGLVGPLSGRYV-DGTFGRGGHTRALLALLNDDAAVLVMDKDPQAIEVAQ 60

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +     + S++  +F+ L D +      GVDGV+ DLGVSS Q+D  +RGFSFQ+ GP
Sbjct: 61  -ALAAEDGRVSVYHGSFADLPDALRQLGWAGVDGVLLDLGVSSPQLDQDERGFSFQRQGP 119

Query: 133 LDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM + SG + ++ +   +  DL  +L   GEE+ A RIA AIVK R  +P  TT  L
Sbjct: 120 LDMRMDNSSGQTVAEYLQGVSETDLISVLRDYGEERFARRIAAAIVKARADSPITTTLQL 179

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + L+ K  +       HPATR+FQALRI +N E+E+L   L      L   G L V+SFH
Sbjct: 180 AELV-KAAHPRWEKHKHPATRTFQALRIAINRELEDLDVLLDVVVDCLSPSGRLAVISFH 238

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR VK+F    S      R +           ++  K + P++ +V  N R+RSA L
Sbjct: 239 SLEDRKVKQFMRKASQGPKVPRGVPVQGDTMRGPLALVGKAIKPSEREVQANVRARSAVL 298

Query: 312 RAGMR 316
           R   R
Sbjct: 299 RIAER 303


>gi|284048645|ref|YP_003398984.1| S-adenosyl-methyltransferase MraW [Acidaminococcus fermentans DSM
           20731]
 gi|283952866|gb|ADB47669.1| S-adenosyl-methyltransferase MraW [Acidaminococcus fermentans DSM
           20731]
          Length = 309

 Score =  173 bits (438), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 106/305 (34%), Positives = 169/305 (55%), Gaps = 9/305 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VLLE+ +  +   P  + +D T G GG+S    ++      +I +D+D  A++   E
Sbjct: 5   HKSVLLEESVQWVVTDPKGIYVDCTLGGGGHSHRITELLDPEGLLIGIDQDEDAIAAATE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++D + Q  +    F  L   +   G   VDG++FDLGVSS Q+D  +RGFS+   GPL
Sbjct: 65  RLKDARCQVKIVHNNFRNLDQILDQLGIPQVDGILFDLGVSSYQLDTPERGFSYMHDGPL 124

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM   + ++A  VVN+    DL  ++   GEE+ A RIA  IV  R+  P +TT +L 
Sbjct: 125 DMRMDQEASLTAEQVVNRYKEDDLAGLIYKYGEERWAKRIAQFIVAARKEHPIRTTGELV 184

Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  +   ++ +  HPA R+FQA+RI VN+E++ L   + +A   LK+GG + V++FH
Sbjct: 185 HIIKAAIPKGARQDGPHPAKRTFQAIRIEVNDELKILDATMEAAVHHLKSGGHIGVITFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR++K+ F  R  +       +P        +    K   P + ++A N R+RSA+L
Sbjct: 245 SLEDRIIKQAF-KRLQRGCICPPELPVCVCGRKPELKKLKEFTPGEAELAENPRARSARL 303

Query: 312 RAGMR 316
           R  ++
Sbjct: 304 RGAVK 308


>gi|297181413|gb|ADI17602.1| predicted s-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [uncultured delta
           proteobacterium HF0130_19C20]
          Length = 314

 Score =  173 bits (438), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 116/307 (37%), Positives = 174/307 (56%), Gaps = 20/307 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77
           H+ VL ++V+    P+P + ILD T G GG+S    +    +++  +DRD  AV    + 
Sbjct: 7   HISVLQKEVVDFAPPSP-QTILDCTLGGGGHSYKLLEKYPKASLYGIDRDSIAVKAADQR 65

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++++++Q  L  A+FS+L   +   G    D ++ D+GVSS QI C +RGFSF   GPLD
Sbjct: 66  LQNFRKQTCLIHASFSELPAMIDKWGNPIFDYIIADIGVSSEQISCPERGFSFLNEGPLD 125

Query: 135 MRMSCS--GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           MRM      ++A ++VN AN  +L  IL   GEE+ A RI   I+  R+   F+TT +L+
Sbjct: 126 MRMDPERQHLTAENIVNNANEHELVNILRNFGEERFARRIVSTILVERRKKKFRTTLELA 185

Query: 193 SLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            L++  +      R  +PAT++FQALRI VNNE+ EL   L +  K LK  G + V+SFH
Sbjct: 186 ELVKNVIPNKMRKRGFNPATKTFQALRIAVNNELLELTTLLENVPKFLKNSGRMAVISFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI------TKKVVVPTQEDVAFNRR 305
           SLEDR+VK+ F       +      P++    V   I      T++ V  ++E++A N R
Sbjct: 246 SLEDRIVKQKFRKWENPCVC-----PTDLPYCVCGGIPLGKVLTRRQVKASKEEIAKNPR 300

Query: 306 SRSAKLR 312
           SRSA LR
Sbjct: 301 SRSAHLR 307


>gi|206896128|ref|YP_002247018.1| S-adenosyl-methyltransferase MraW [Coprothermobacter proteolyticus
           DSM 5265]
 gi|263446122|sp|B5Y8C1|RSMH_COPPD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|206738745|gb|ACI17823.1| S-adenosyl-methyltransferase MraW [Coprothermobacter proteolyticus
           DSM 5265]
          Length = 299

 Score =  173 bits (438), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 111/300 (37%), Positives = 164/300 (54%), Gaps = 23/300 (7%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76
           +H PV+ ++V  LL      + +DAT G+GG+          ++ I +D DP AV    E
Sbjct: 6   EHKPVMAKQVAELLVSNEEGIYVDATAGSGGHLGLLANTYPEASFIGIDIDPEAVKFLTE 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                     + +  ++ L D +       VDG++ DLG+S  Q     RGFS +  GPL
Sbjct: 66  KFAGVS-NVRIIRGNYADLPDILHSMEIGQVDGILLDLGISMHQALSAQRGFSIKNPGPL 124

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMR S    ++A ++VN  + + L  I+   GEE++A +IA A+V+ R+  P +TT +L+
Sbjct: 125 DMRFSIDQKVTAYELVNSLSEEQLADIIYRYGEERRARKIAKAVVEARKVKPLETTDELA 184

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            L+ +TV +    RIHPATR FQALRI  N E++ L   L    + LK GG L V+S+HS
Sbjct: 185 DLVARTVGY--RGRIHPATRVFQALRIATNRELDNLQVALPRIFQVLKEGGRLAVISYHS 242

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK+FF +   +   +R              +TKKVV P+ E++  N  SRSAKLR
Sbjct: 243 LEDRIVKQFFKTWEEEGKGLR--------------LTKKVVKPSLEEINENPSSRSAKLR 288


>gi|213423591|ref|ZP_03356571.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 237

 Score =  172 bits (437), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 100/236 (42%), Positives = 148/236 (62%), Gaps = 13/236 (5%)

Query: 92  FSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASD 146
           FS L DYV ++     +DG++ DLGVSS Q+D  +RGFSF + GPLDMRM  + G SA++
Sbjct: 3   FSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFMRDGPLDMRMDPTRGQSAAE 62

Query: 147 VVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNR 206
            +  A   D+  +L   GEE+ A RIAHAIV+R +  P   T++L+ ++       K+  
Sbjct: 63  WLQTAEEADIAWVLKTFGEERFAKRIAHAIVERNREQPMTRTKELAEVVAAATPV-KDKF 121

Query: 207 IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF--AS 264
            HPATR+FQA+RI+VN+E+EE+ Q L+S+   L +GG L ++SFHSLEDR+VK+F    S
Sbjct: 122 KHPATRTFQAVRIWVNSELEEIEQALKSSLSVLASGGRLSIISFHSLEDRIVKRFMREQS 181

Query: 265 RSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           R  +V A   M  +          +++ K  ++P +++VA N R+RS+ LR   RT
Sbjct: 182 RGPQVPAGLPMTEAQLKKLGGRELRALGK--LMPGEKEVAENPRARSSVLRIAERT 235


>gi|312143945|ref|YP_003995391.1| S-adenosyl-methyltransferase MraW [Halanaerobium sp. 'sapolanicus']
 gi|311904596|gb|ADQ15037.1| S-adenosyl-methyltransferase MraW [Halanaerobium sp. 'sapolanicus']
          Length = 310

 Score =  172 bits (437), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 118/313 (37%), Positives = 173/313 (55%), Gaps = 22/313 (7%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
           +H  VLL + I  LN     V LD T G GG+S    K  S    +IA+DRD  A+   +
Sbjct: 4   EHKAVLLNEAIKYLNIKEDGVYLDGTLGRGGHSFEILKKLSEHGKLIAIDRDIEAIKAVR 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           E   +      L  A F    D V +K     VDG++FDLGVSS Q+D  +RGFS+QK G
Sbjct: 64  EKQPE-NSSLILEHANFLDF-DKVLNKHSISKVDGMLFDLGVSSPQLDNAERGFSYQKDG 121

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+ +  ++A+D+VN  + K+L +I+   GEE  A RIA  IV+ R+    + T +
Sbjct: 122 PLDMRMNQNQALTAADIVNNYSQKELIKIISDYGEENWAVRIAEFIVEARKKEEIERTSE 181

Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I+  V   ++    HPA R+FQALRI  N+E+ +L + ++ +   L  GG ++++S
Sbjct: 182 LVEIIKAAVPKGARRGGGHPARRTFQALRIATNDELNQLQKLIKKSVSFLNKGGRIVIIS 241

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV------FQSITKKVVVPTQEDVAFN 303
           FHSLEDR+VK  F     + +A     P +    V       + IT+  +   + +V  N
Sbjct: 242 FHSLEDRIVKHSF-----RELAKDCTCPPDFPICVCDKVSHVKVITRSPIEAKKNEVDSN 296

Query: 304 RRSRSAKLRAGMR 316
            R+RSAKLRA  +
Sbjct: 297 PRARSAKLRAAEK 309


>gi|300780824|ref|ZP_07090678.1| S-adenosyl-methyltransferase MraW [Corynebacterium genitalium ATCC
           33030]
 gi|300532531|gb|EFK53592.1| S-adenosyl-methyltransferase MraW [Corynebacterium genitalium ATCC
           33030]
          Length = 333

 Score =  172 bits (437), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 110/316 (34%), Positives = 174/316 (55%), Gaps = 24/316 (7%)

Query: 20  HVPVLLEKVIALLNPA-----PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVS 72
           H+PV+ +++  LL PA     P  VI+D T GAGG++  F      ++VI +DRD  A++
Sbjct: 13  HIPVMRDRMGELLRPAVERFGPHAVIVDGTLGAGGHTEYFLDTFPEASVIGIDRDGAALA 72

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD-----------KGVDGVVFDLGVSSMQIDCG 121
              E +  + ++F+  +  F  L + + D            G+ G  FDLGVSSMQ+D  
Sbjct: 73  QAGERLARFGDRFAPVRGRFDCLAESLRDGTGPVFETVRAHGLAGAFFDLGVSSMQLDQE 132

Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGF+++   PLDMRM  S GI+A+DV+N  +  DL  +L   G+E+ A +IA A++  R
Sbjct: 133 ERGFAYRVDAPLDMRMDPSAGITAADVLNTYSHGDLAHVLKAYGDERFAGKIASAVLDER 192

Query: 181 QSAPFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
           + APF T+  L  L+ + +   ++    HPA R+FQALR+ VN E++ L   L    +AL
Sbjct: 193 EKAPFDTSARLVELLYRVIPAATRRTGGHPAKRTFQALRVEVNRELDALTNVLPMVAEAL 252

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297
             GG  + +S+ S ED+LVK+ F   + S     +   +P  A  A F+ +T      + 
Sbjct: 253 GPGGRAVFMSYQSHEDKLVKRAFTEWTTSKTPAGLPTELPGMA--AEFRMVTHGAEKASV 310

Query: 298 EDVAFNRRSRSAKLRA 313
            +V  NRR+   ++RA
Sbjct: 311 AEVEVNRRAAPVRVRA 326


>gi|167758763|ref|ZP_02430890.1| hypothetical protein CLOSCI_01105 [Clostridium scindens ATCC 35704]
 gi|167663503|gb|EDS07633.1| hypothetical protein CLOSCI_01105 [Clostridium scindens ATCC 35704]
          Length = 311

 Score =  172 bits (437), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 107/310 (34%), Positives = 175/310 (56%), Gaps = 23/310 (7%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGS--NVIALDRDPFAVSCGQ 75
           +H  VLL++ I  LN  P  + +D T G GG++   C ++G+  ++I +D+D  A+    
Sbjct: 4   EHKSVLLDETINGLNIKPDGIYVDGTLGGGGHAYEVCTRLGTKGSIIGIDQDAAAIEAAD 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             + D+ E+ ++ ++ +  ++  + + G   VDG++ DLGVSS Q+D  +RGFS+++  P
Sbjct: 64  ARLNDFGEKVTIVRSNYCDMKSRLHELGIDKVDGIILDLGVSSYQLDTAERGFSYREDAP 123

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM     ++A D+VN  +  DL R++   GE+K A  IA  IV +R   P +TT  L
Sbjct: 124 LDMRMDTRQKMTARDIVNDYSEMDLYRVIRDYGEDKFAKNIAKHIVAQRGKGPIETTGQL 183

Query: 192 SSLIQKTV---YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           + +I+  +   Y  K+   HPA R+FQA+RI +N E+E L   L    + L  GG L ++
Sbjct: 184 TEIIRGAIPMKYQKKSG--HPAKRTFQAIRIELNRELEVLRDTLDDMIELLNPGGRLCII 241

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS------ITKKVVVPTQEDVAF 302
           +FHSLEDR+VK  F              P +    V  +      +T+K ++P++ ++  
Sbjct: 242 TFHSLEDRIVKSAFKKNENPCTC-----PPDFPVCVCGNVSKGSIVTRKPILPSKYEMEA 296

Query: 303 NRRSRSAKLR 312
           N RS+SAKLR
Sbjct: 297 NSRSKSAKLR 306


>gi|213965216|ref|ZP_03393413.1| S-adenosyl-methyltransferase MraW [Corynebacterium amycolatum SK46]
 gi|213952068|gb|EEB63453.1| S-adenosyl-methyltransferase MraW [Corynebacterium amycolatum SK46]
          Length = 346

 Score =  172 bits (437), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 112/322 (34%), Positives = 164/322 (50%), Gaps = 29/322 (9%)

Query: 20  HVPVLLEKVIALLNPA-----PGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVS 72
           HVPVLL +V  LL P         V++D T GAGG++    +      V+ LDRD  A+ 
Sbjct: 17  HVPVLLHRVTDLLRPGIEALGDDAVVVDGTLGAGGHTEYLLEQFPKLCVVGLDRDDNALR 76

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYV--------------------PDKGVDGVVFDLG 112
             +E +  +  +F  F+  F  L + +                      KG+ G +FDLG
Sbjct: 77  GAEERLARFGNRFVAFRVRFDSLAEVLSGEIPAAAGGSGAENILARAAGKGIAGALFDLG 136

Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASR 171
           VSSMQ+D  +RGF+++   PLDMRM  S GI+A+DV+N  +  D+ RIL   G+E+ A +
Sbjct: 137 VSSMQLDQVNRGFAYRVDAPLDMRMDASQGITAADVLNTYSHGDIARILSTYGDERFAGK 196

Query: 172 IAHAIVKRRQSAPFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQ 230
           IA AI++ R+  PF  +  L  L+ +T+   S+    HPA R+FQALRI VN E+E L  
Sbjct: 197 IASAILREREKEPFTNSGRLVELLYETIPAASRRKGGHPAKRTFQALRIEVNRELEALEN 256

Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK 290
            L     AL   G  + +S+ SLEDR+VKK F  R          +    H   F  IT+
Sbjct: 257 VLPQVCDALAVDGRAVFMSYQSLEDRIVKKDFVERVKSTTPPGLPMELPGHEPHFALITR 316

Query: 291 KVVVPTQEDVAFNRRSRSAKLR 312
                +  ++  N R+   ++R
Sbjct: 317 GAEKASASEIEDNPRAAPVRVR 338


>gi|313893629|ref|ZP_07827197.1| S-adenosyl-methyltransferase MraW [Veillonella sp. oral taxon 158
           str. F0412]
 gi|313441773|gb|EFR60197.1| S-adenosyl-methyltransferase MraW [Veillonella sp. oral taxon 158
           str. F0412]
          Length = 310

 Score =  172 bits (437), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 106/307 (34%), Positives = 168/307 (54%), Gaps = 10/307 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
           +H  VLL + +  +   P  + +D T G  G++ +  KM      +I LD+D  A+S  +
Sbjct: 4   NHTSVLLRETVDSVVTNPKGIYVDCTLGGAGHAHAVGKMLDPEGMIIGLDQDEDALSVAR 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + + D   Q       FS L++ + + G   VDG +FDLGVSS Q+D  +RGFS+   GP
Sbjct: 64  QRLSDLNCQVLTIPTNFSNLKEALQNAGIYEVDGFIFDLGVSSYQLDTPERGFSYMNDGP 123

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM     ++A ++VN+ + + L +I+   GEE+ A RI   IV  RQ     TT +L
Sbjct: 124 LDMRMDKDAPLTAEEIVNEYDAEQLLQIIRDYGEERWAKRIVEFIVNARQENRITTTGEL 183

Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I++ +   ++ +  HPA R+FQA+RI VN E+  L      A   LK  G + V++F
Sbjct: 184 VRIIKQAIPAKARQDGPHPAKRTFQAIRIEVNRELAILHDSFVDAVSMLKPKGKIGVITF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+ K+ F   S   +    + + +  H AV ++   K + P+  ++  N R+RSA
Sbjct: 244 HSLEDRITKQTFKELSTACICPPELPMCACNHKAVVKA-KNKAIEPSAGEIEVNPRARSA 302

Query: 310 KLRAGMR 316
           KLR  ++
Sbjct: 303 KLRVAIK 309


>gi|83816833|ref|YP_444696.1| S-adenosyl-methyltransferase MraW [Salinibacter ruber DSM 13855]
 gi|123529490|sp|Q2S535|RSMH_SALRD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|83758227|gb|ABC46340.1| S-adenosyl-methyltransferase MraW [Salinibacter ruber DSM 13855]
          Length = 336

 Score =  172 bits (437), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 115/324 (35%), Positives = 175/324 (54%), Gaps = 22/324 (6%)

Query: 20  HVPVLLEKVIA-LLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
           H PVL   V A L+  A G+ + DAT G GG++R+   +      V+ +DRDP A+   +
Sbjct: 24  HAPVLSHDVQARLVTDASGRYV-DATLGGGGHARALLDVLDPDGVVLGIDRDPEALETAR 82

Query: 76  ETMRDYKE--QFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           + + D +E  +F     TF  L+D +  +    +DG++ DLGVSS QID  +RGFSF+  
Sbjct: 83  DRLADEREAGRFWAVHGTFGNLRDVLAAEDLIPIDGLLLDLGVSSHQIDVPERGFSFRDE 142

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
           GPLDMRM    G++A  VVN    +DL  +L   GEE +A +IA A+   R   P  TT+
Sbjct: 143 GPLDMRMDPQRGLTAQQVVNGWGERDLRDVLREYGEESRAGQIARALCDAR---PLDTTR 199

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            L+ +++        + +   TR FQALRI VN E++EL Q L  A + ++ GG +  +S
Sbjct: 200 ALAEVVEDCA--PPPDTVKTLTRVFQALRIVVNAELDELEQVLEQATEVVRTGGRIAAIS 257

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           +HSLEDR VK++    + +    R +  +   P  +    +  +   + +V  N R+RSA
Sbjct: 258 YHSLEDRRVKRYLRYGNFEGEPRRDLYGTLVAP--WAETPRGPIEAGESEVEANPRARSA 315

Query: 310 KLRAGMRTVERSIEDDSFVHLPRL 333
            L    R  ER  +D++   LP L
Sbjct: 316 HL----RVAERRDDDEAGAPLPPL 335


>gi|262276873|ref|ZP_06054666.1| S-adenosyl-methyltransferase MraW [alpha proteobacterium HIMB114]
 gi|262223976|gb|EEY74435.1| S-adenosyl-methyltransferase MraW [alpha proteobacterium HIMB114]
          Length = 329

 Score =  172 bits (437), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 114/298 (38%), Positives = 166/298 (55%), Gaps = 9/298 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H PV+L +V   L  +  K+ILD TFG GGYS    K  SN  VIA+DRD   +   ++ 
Sbjct: 8   HYPVMLREVTNFL--SDNKLILDCTFGGGGYSSEILKNYSNSKVIAIDRDIEIIQFAKKL 65

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
            + Y ++F      FS++        +D  +FDLGVS  Q+    RGFSF     L M M
Sbjct: 66  EKKYLKRFVFKNLKFSEIHKVKEINQIDYFIFDLGVSHFQLKDMKRGFSFSSDDSLSMSM 125

Query: 138 SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK 197
             + + A +++ + + KDL  IL   GEEK AS+IA+ I+  R++    + + L+ +I+ 
Sbjct: 126 GLTDLDAEELIRKVSEKDLKNILKFFGEEKFASKIANKIINVRKNKNISSGKKLAEIIE- 184

Query: 198 TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRL 257
           TV F K N+ HP+T+SFQALR+ VN E+ E+ + L+   +  K    +I+V+FHSLED L
Sbjct: 185 TVKFKK-NKTHPSTKSFQALRMIVNQELLEIYKSLKFIIENCKENSTIIIVTFHSLEDLL 243

Query: 258 VKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           VKK       K    R++ P  S+      + +T K + P  E+V  N  SRSAKLRA
Sbjct: 244 VKKIINFYGKKTSTSRYL-PQDSDIKKMPIKILTNKAIKPNSEEVNVNPSSRSAKLRA 300


>gi|134095979|ref|YP_001101054.1| S-adenosyl-methyltransferase MraW [Herminiimonas arsenicoxydans]
 gi|263456141|sp|A4G8U6|RSMH_HERAR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|133739882|emb|CAL62933.1| S-adenosyl-dependent methyl transferase MraW [Herminiimonas
           arsenicoxydans]
          Length = 321

 Score =  172 bits (437), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 112/308 (36%), Positives = 180/308 (58%), Gaps = 16/308 (5%)

Query: 20  HVPVLLEKVI---ALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSC 73
           H  VLLE+ +   AL       + +D TFG GG+SR    ++G N  ++A D+D  A++ 
Sbjct: 11  HRTVLLEEAVDALALDGERANGMYVDGTFGRGGHSRLILQRLGENGCLLAFDKDTQAIAN 70

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
              T+ D  ++F++   +F+ L   + ++G   V+GV+ DLG+SS Q+D   RGFSF+  
Sbjct: 71  AA-TIED--KRFAIVHDSFATLSTALAERGIAQVNGVLLDLGISSPQVDDAARGFSFRAD 127

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
           GPLDMRM  + GISA++ +     + + +++   GEE+ A +IA AIV  R   P  +T+
Sbjct: 128 GPLDMRMDTTRGISAAEWLATETEQKIEKVIREYGEERFAFQIAKAIVAGRAVQPISSTR 187

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            L+ ++ + V   +  +  PATR+FQA+RIF+N E+EEL   L  A + L   G L+V+S
Sbjct: 188 QLAEIVARAVKTREKGK-DPATRTFQAIRIFINQELEELEVVLNEAYRHLAPHGRLVVIS 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK+F AS++      R + I +   P     +  + + P+  +++ N R+RS
Sbjct: 247 FHSLEDRIVKQFMASKANVPQPDRRLPIRAVDLPQPEMKLIAR-IKPSAAEISANPRARS 305

Query: 309 AKLRAGMR 316
           A +R   R
Sbjct: 306 AVMRVAER 313


>gi|319760278|ref|YP_004124216.1| S-adenosyl-L-methionine-dependent methyltransferase [Candidatus
           Blochmannia vafer str. BVAF]
 gi|318038992|gb|ADV33542.1| S-adenosyl-L-methionine-dependent methyltransferase [Candidatus
           Blochmannia vafer str. BVAF]
          Length = 330

 Score =  172 bits (437), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 110/315 (34%), Positives = 175/315 (55%), Gaps = 24/315 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR----SFCKMGSNVIALDRDPFAVSCGQ 75
           H  VLL + I  LN  P  + +D TFG+GG+SR       K G  +IA D+D  +V  G+
Sbjct: 3   HKSVLLHEAIEALNIDPSGIYIDGTFGSGGHSRLILSKLTKFG-RLIAFDKDHLSVEIGK 61

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            T+ +   +FS+   +FS+  +YV +      ++G++ DLG+   Q+   +RGFSF K G
Sbjct: 62  -TIFNQDSRFSIVHMSFSKAMNYVHNVKLLGSINGILLDLGICENQLFDANRGFSFIKDG 120

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM   +G +A+  +  ++ + +T +L  LGEE+   +IA +I+  R+  P   T +
Sbjct: 121 PLDMRMDITTGQTAAQWIAMSSQEHITWVLKNLGEERFCKKIAKSILFHRRIRPIVRTHE 180

Query: 191 LSSLIQKTVYFS--KNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           LS ++   +  S  K N    HPATRSF A+R+ +N E+E +A+ L+     L   G L+
Sbjct: 181 LSKIVSDIIVPSRIKKNSWNKHPATRSFLAIRMHINKELEAIAKVLKDMYNLLSNKGRLV 240

Query: 247 VVSFHSLEDRLVKKFFASRS-------GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
           ++SF+SLEDRLVK F    S          +    +I   +    F++I K  ++PT+++
Sbjct: 241 IISFNSLEDRLVKHFIYKHSRIFPELPKLALTESQIINIFSSSCQFKNIGK--IIPTKQE 298

Query: 300 VAFNRRSRSAKLRAG 314
           +  N R+RSA LR  
Sbjct: 299 IKENIRARSAILRCA 313


>gi|172035001|ref|YP_001801502.1| S-adenosyl-methyltransferase MraW [Cyanothece sp. ATCC 51142]
 gi|263446171|sp|B1WZ70|RSMH_CYAA5 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|171696455|gb|ACB49436.1| putative methyltransferase [Cyanothece sp. ATCC 51142]
          Length = 315

 Score =  172 bits (437), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 120/305 (39%), Positives = 167/305 (54%), Gaps = 33/305 (10%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           H PVL ++VI  L   P    LDAT G GG+SR   +   +V    +D D  A++  QE 
Sbjct: 33  HTPVLCQEVIDGLAIEPNGHYLDATLGRGGHSRLILEAFPDVRVTGIDLDEEAIAITQEN 92

Query: 78  ---MRDYKEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
              M D + Q  ++Q  F+   DY  + G  +G++ DLGVSS Q D  +RGFSF+   PL
Sbjct: 93  FSLMGDKRLQ--VWQGNFA---DYPGEIGEFNGIIADLGVSSPQFDVPERGFSFRHQAPL 147

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+    ++A +++N  +   L  +    GEE+++  IA  +V++R   PF+TT +L+
Sbjct: 148 DMRMNREQSLTAGEIINHWDQTSLADLFYQYGEERRSRAIARRLVQQR---PFETTTELA 204

Query: 193 SLIQKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             I K     +   RIHPATR FQALRI VN+E+  L + L  A   LK GG + ++SFH
Sbjct: 205 EAIAKCFPPKQRYGRIHPATRVFQALRIAVNDELGSLERFLEKAPHWLKPGGRIGIISFH 264

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR VK  F  R   ++ V               ITKK ++P  E+   N RSRSAKL
Sbjct: 265 SLEDRRVKYSF--RDSLLLDV---------------ITKKPIIPQPEEEEKNPRSRSAKL 307

Query: 312 RAGMR 316
           R   R
Sbjct: 308 RFAQR 312


>gi|139473295|ref|YP_001128010.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes str.
           Manfredo]
 gi|54037825|sp|P65432|RSMH_STRP3 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|54037826|sp|P65433|RSMH_STRP8 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|54041488|sp|P65431|RSMH_STRP1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|88909223|sp|Q48RZ0|RSMH_STRPM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262826830|sp|A2RD40|RSMH_STRPG RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262831446|sp|Q1JAG5|RSMH_STRPB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262831450|sp|Q1JKL7|RSMH_STRPC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262831454|sp|Q1JFK8|RSMH_STRPD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|134271541|emb|CAM29765.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes str.
           Manfredo]
          Length = 316

 Score =  172 bits (437), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 108/308 (35%), Positives = 174/308 (56%), Gaps = 12/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGS--NVIALDRDPFAVSCGQE 76
           HV VLL + + +L+  P  + +DAT G  G+S     K+G   ++   D+D  A+   Q 
Sbjct: 7   HVTVLLHETVDMLDIKPDGIYVDATLGGSGHSAYLLSKLGEEGHLYCFDQDQKAIDNAQV 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSG 131
           T++ Y  K Q +  +  F  L+  +   GVD   G+++DLGVSS Q+D  +RGFS+++  
Sbjct: 67  TLKSYIDKGQVTFIKDNFRHLKARLTALGVDEIDGILYDLGVSSPQLDERERGFSYKQDA 126

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM   S ++A +VVN     DL +I    GE+K + +IA  I + R   P +TT +
Sbjct: 127 PLDMRMDRQSLLTAYEVVNTYPFNDLVKIFFKYGEDKFSKQIARKIEQARAIKPIETTTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ LI+      +   + HPA + FQA+RI VN+E+    + ++ A + L   G + V++
Sbjct: 187 LAELIKAAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQDAMELLALDGRISVIT 246

Query: 250 FHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDRL K+ F   S   V     +IP +  P  F+ +++K ++P+  ++  N+R+ S
Sbjct: 247 FHSLEDRLTKQLFKEASTVDVPKGLPLIPEDMKPK-FELVSRKPILPSHSELTANKRAHS 305

Query: 309 AKLRAGMR 316
           AKLR   +
Sbjct: 306 AKLRVAKK 313


>gi|81428357|ref|YP_395357.1| PutativeS-adenosylmethionine-dependent-methyltran sferase
           [Lactobacillus sakei subsp. sakei 23K]
 gi|88909201|sp|Q38XN3|RSMH_LACSS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|78609999|emb|CAI55047.1| PutativeS-adenosylmethionine-dependent-methyltransferase
           [Lactobacillus sakei subsp. sakei 23K]
          Length = 318

 Score =  172 bits (436), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 102/310 (32%), Positives = 174/310 (56%), Gaps = 10/310 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77
           H  VLL++ +  LN  P  + +DAT G GG+S          ++ + D+D  A+   ++ 
Sbjct: 7   HQSVLLKETVDALNVQPDGIYVDATLGGGGHSEYLLSQLTTGHLYSFDQDDHALESSRQR 66

Query: 78  MRDYKE--QFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           +  Y +  Q +  ++ F  L+  + ++G+   DG+++DLGVSS Q D   RGFS++K  P
Sbjct: 67  LAKYADAGQVTFIKSNFRFLKIALAEQGITKIDGILYDLGVSSPQFDDAQRGFSYKKEAP 126

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM     ++A  VVN+ + + L +I    GEEK + ++A  I ++R+ AP +TT  L
Sbjct: 127 LDMRMDQGAELTAYTVVNEWSYQQLIKIFFRYGEEKFSKQVARKIEQQREIAPIETTIQL 186

Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           + LI++ +   ++    HPA R FQA+RI VN+E+  +   +  A   +K GG + +++F
Sbjct: 187 ADLIKEAIPAPARRTGGHPAKRIFQAIRIAVNDELGAIEDSVEQAIPLVKVGGRISIITF 246

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
            SLEDRLVK  F  ++      + + I       V + + +K ++PT++++  N R+ SA
Sbjct: 247 QSLEDRLVKTMFKEQATLPDIPKGLPIMPGTEKTVLKLVNRKPILPTEDELTVNHRAHSA 306

Query: 310 KLRAGMRTVE 319
           KLR   +  E
Sbjct: 307 KLRVAEKQKE 316


>gi|260584184|ref|ZP_05851932.1| S-adenosyl-methyltransferase MraW [Granulicatella elegans ATCC
           700633]
 gi|260158810|gb|EEW93878.1| S-adenosyl-methyltransferase MraW [Granulicatella elegans ATCC
           700633]
          Length = 313

 Score =  172 bits (436), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 104/304 (34%), Positives = 173/304 (56%), Gaps = 11/304 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77
           HV VLL + +  L   P  + +D T G  G+S          ++   D+D  A+   +  
Sbjct: 4   HVTVLLHETVDNLEVKPDGIYVDCTLGGAGHSEYLLGQLTTGHLYCFDQDMNAIDNAKIR 63

Query: 78  MRDYKEQ--FSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           ++++ ++   +   A F  +Q  + + G   VDG+++DLGVSS Q+D  +RGFS+ ++  
Sbjct: 64  LKNFIDEGKVTFIHANFRMIQKKLNELGIKKVDGILYDLGVSSPQLDQIERGFSYHQNAI 123

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  +  ++A +++N+ +  +L RI    GEEK + +IA  I + RQ    +TT +L
Sbjct: 124 LDMRMDQTAPLTAKEIINEWSYDELVRIFYRYGEEKFSKQIARNIERIRQDHGIETTGEL 183

Query: 192 SSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+ ++   ++    HPA R FQA+RI VN+E+  +   L  A   L+ GG + V+SF
Sbjct: 184 VDIIRDSIPAAARRKGGHPAKRIFQAVRIAVNDELAAVEDSLEQAFDLLEVGGRISVISF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+VK  F  +S      +++  +P     A F+ IT+K ++PT+E++  N RS+S
Sbjct: 244 HSLEDRIVKTMFKQQSTVEQGPKNLPILPGQLESANFKLITRKPILPTEEEMQENSRSQS 303

Query: 309 AKLR 312
           AKLR
Sbjct: 304 AKLR 307


>gi|152967151|ref|YP_001362935.1| S-adenosyl-methyltransferase MraW [Kineococcus radiotolerans
           SRS30216]
 gi|263456185|sp|A6WCY2|RSMH_KINRD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|151361668|gb|ABS04671.1| S-adenosyl-methyltransferase MraW [Kineococcus radiotolerans
           SRS30216]
          Length = 391

 Score =  172 bits (436), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 111/324 (34%), Positives = 176/324 (54%), Gaps = 12/324 (3%)

Query: 1   MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM 57
           ++ ++ +      H     H  V+LE+   +L+PA   PG V +D T G GG++    + 
Sbjct: 9   VQGRAGEGAEERAHDAARRHASVMLERCTRVLSPALDHPGAVTVDVTLGMGGHAHELLRR 68

Query: 58  --GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLG 112
             G  ++ +DRDP A+      + ++ ++ +L  +    L + + D G   VD V FDLG
Sbjct: 69  HPGLRLVGMDRDPQALELAAHRLHEFADRITLVHSVSDGLGEALDDLGLDTVDAVFFDLG 128

Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASR 171
           VSS+Q+D  +RGFS+ +   LDMRM      +A+DV+N  +   LTRIL + GEE+ A R
Sbjct: 129 VSSLQLDEAERGFSYARDTALDMRMDPGAPTTAADVLNTYSHSQLTRILRVYGEERFAPR 188

Query: 172 IAHAIVKRRQSAPFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQ 230
           IA AIV+ R   PF ++  L  L++  V   ++    +PA R+FQALRI VN+E+  + +
Sbjct: 189 IASAIVRERALEPFTSSARLVDLVRANVPAATRRTGGNPAKRTFQALRIEVNDELGVVER 248

Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSIT 289
            L  A + L   G L V++FHSLEDR+VK      S          +P+ + P   + +T
Sbjct: 249 SLPVAFERLAPEGRLAVLTFHSLEDRIVKNALRELSSSSAPPDLPFVPAGSGPRA-ELLT 307

Query: 290 KKVVVPTQEDVAFNRRSRSAKLRA 313
           +      + ++A N R+ SA+LRA
Sbjct: 308 RGGETADEAELAENPRAASARLRA 331


>gi|62184992|ref|YP_219777.1| S-adenosyl-methyltransferase MraW [Chlamydophila abortus S26/3]
 gi|68565433|sp|Q5L6B5|RSMH_CHLAB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|62148059|emb|CAH63812.1| putative S-adenosyl-methyltransferase [Chlamydophila abortus S26/3]
          Length = 298

 Score =  172 bits (436), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 115/302 (38%), Positives = 161/302 (53%), Gaps = 24/302 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI---ALDRDPFAVSCGQE 76
           H+PVL+ + ++L      K   D T GAGG++ +F     +++   A DRD  A+S  +E
Sbjct: 7   HIPVLVNECLSLFADRHPKFFCDVTVGAGGHAEAFLSAYPSIVSYDASDRDVAALSMAKE 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ-KSGPLDM 135
            +  + ++     A+F  L     +   DG++ DLGVSSMQ+D   RGFSFQ     LDM
Sbjct: 67  HLEKFGDRVHFHHASFEDLSKDPREHVYDGILADLGVSSMQLDNLSRGFSFQGDDHALDM 126

Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM  + GI+AS+V++    ++L +I    GEE Q    A AIV  R+     T +DL   
Sbjct: 127 RMDVTKGITASEVLHTLREEELGKIFREYGEEPQWKNAAKAIVHFRRRKKIVTVRDLKEA 186

Query: 195 IQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
             K    +    +IHP T  FQALR++VN E  +L   L SA + L  GG LI++SF S 
Sbjct: 187 TAKVFPSYRLRKKIHPLTLIFQALRVYVNQEDVQLKVLLESAMRWLAPGGRLIIISFCSS 246

Query: 254 EDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           EDR VK FF  A +SG  M                 +TKKV++PT E++  N R RSAKL
Sbjct: 247 EDRPVKWFFREAEKSGLGMI----------------LTKKVIMPTYEEIRKNPRCRSAKL 290

Query: 312 RA 313
           R 
Sbjct: 291 RC 292


>gi|56476234|ref|YP_157823.1| S-adenosyl-methyltransferase MraW [Aromatoleum aromaticum EbN1]
 gi|68565443|sp|Q5P6Y9|RSMH_AZOSE RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|56312277|emb|CAI06922.1| S-adenosyl-methyltransferase mraW [Aromatoleum aromaticum EbN1]
          Length = 312

 Score =  172 bits (436), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 123/306 (40%), Positives = 172/306 (56%), Gaps = 12/306 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           HV VLL + +  L   PG V +D TFG GG+SR+   K+ ++  +IA DRDP A+   + 
Sbjct: 7   HVTVLLAEAVEALAIRPGGVYVDGTFGRGGHSRAILAKLDADGRLIAFDRDPRAIEVAR- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + D +   +   A FS   + +   G   VDGV+ DLGVSS Q+D   RG SF+   PL
Sbjct: 66  ALPDPR--LTAVHAPFSAFAEELDRLGLEHVDGVLLDLGVSSPQLDEAARGMSFRFDAPL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  S G + +  +  A+V  +T +L   GEE+ A  IA AI   R      +T+ L+
Sbjct: 124 DMRMDTSRGQTVAQWLADASVAQITEVLRDYGEERFAYAIAKAIAAARAGGAVASTRQLA 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +++K V   +  + HPATRSFQALRIF+N E+EEL+  L +A + LK GG L+ +SFHS
Sbjct: 184 EIVEKAVRTREPGQ-HPATRSFQALRIFINQELEELSLVLPAAVERLKPGGRLVAISFHS 242

Query: 253 LEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK+F    S    +  R  + +   P     +  K   P   +VA N RSRSA +
Sbjct: 243 LEDRIVKRFMRDESRPPQLPSRLPLRAAELPQPRLRLVGKSQRPGPGEVAANPRSRSAVM 302

Query: 312 RAGMRT 317
           R   RT
Sbjct: 303 RVAERT 308


>gi|323142009|ref|ZP_08076860.1| S-adenosyl-methyltransferase MraW [Phascolarctobacterium sp. YIT
           12067]
 gi|322413541|gb|EFY04409.1| S-adenosyl-methyltransferase MraW [Phascolarctobacterium sp. YIT
           12067]
          Length = 310

 Score =  172 bits (436), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 114/315 (36%), Positives = 174/315 (55%), Gaps = 28/315 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPFAVSCGQE 76
           H  +LL + +  L      + +D T G  G+S +F    + G  +I +D+D  A++ G E
Sbjct: 5   HTSILLAESVDFLITDKNGIYVDCTMGGAGHSSAFAAQLEAGGLLIGIDQDDDAIAAGSE 64

Query: 77  TMRDYKEQFSLFQAT-------FSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
            + +   +F+   A        FSQ+ D +    +DG+ FDLGVSS Q+D  +RGFS+  
Sbjct: 65  RLLN---KFTCKTAVAKSNFEIFSQVLDSMGIDEIDGIFFDLGVSSYQLDTPERGFSYMH 121

Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM+  + + A  +VN    ++L  I+   GEE+ A RIA  IV  R+  P  TT
Sbjct: 122 DGPLDMRMNKEASLDAEYIVNHYKEEELADIIHRYGEERWAKRIAQFIVAARKEKPLTTT 181

Query: 189 QDLSSLIQKTVYFSKNNRI---HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            +L  +I+K +   K  R+   HPA R+FQA+RI VNNE+  LA  +  A   LK+GG +
Sbjct: 182 FELVDVIKKAI--PKGARLDGPHPAKRTFQAIRIEVNNELGILADTMERAVNRLKSGGRI 239

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF--QSITKKV--VVPTQEDVA 301
            V++FHSLEDR++K+ FA      +A     P      V   + + +K   +VP++ +V 
Sbjct: 240 GVITFHSLEDRIIKQTFAK-----LAKGCTCPPQLPVCVCGKKPLLRKTGNIVPSKAEVE 294

Query: 302 FNRRSRSAKLRAGMR 316
            N RSRSA+LR  ++
Sbjct: 295 ENPRSRSARLRYAIK 309


>gi|150009093|ref|YP_001303836.1| S-adenosyl-methyltransferase MraW [Parabacteroides distasonis ATCC
           8503]
 gi|167011834|sp|A6LEV0|RSMH_PARD8 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|149937517|gb|ABR44214.1| S-adenosyl-methyltransferase MraW [Parabacteroides distasonis ATCC
           8503]
          Length = 305

 Score =  172 bits (436), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 111/301 (36%), Positives = 169/301 (56%), Gaps = 17/301 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76
           HVPV+L + +  L+  P  + +D TFG GG+SR   K +GS   +   D+D  A     E
Sbjct: 9   HVPVMLRESLEGLDIRPDGIYVDVTFGGGGHSREILKRLGSEGELYGFDQDADA-----E 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  +F+  ++ F  L +++   G    VDG++ DLGVSS   D  DRGFSF+  G 
Sbjct: 64  HNVPADPRFTFVRSNFRYLYNFMRYYGESGEVDGLLADLGVSSHHFDDKDRGFSFRFDGT 123

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+  +G +A+D+VN    + L  +  + GE K + ++A  +VK R++   +T  D 
Sbjct: 124 LDMRMNTRAGQTAADIVNNYTAEALADVFYLYGELKVSRKLASVLVKARETKKIETIGDF 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             +I+   +  K+       + FQALRI VN+E+  L + LRS  + L+ GG L+V+++H
Sbjct: 184 LEVIKP--FTGKDKEKKFLAQVFQALRIEVNDEMRALKEMLRSTLRVLRPGGRLVVITYH 241

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDRLVK F  + + +    +    +   P  F+ +  KV+VPT E+V  N RSRSAKL
Sbjct: 242 SLEDRLVKNFLKTGNFEGKCEQDFFGNVRSP--FRLVNNKVIVPTDEEVERNPRSRSAKL 299

Query: 312 R 312
           R
Sbjct: 300 R 300


>gi|116628390|ref|YP_821009.1| S-adenosyl-methyltransferase MraW [Streptococcus thermophilus
           LMD-9]
 gi|68565436|sp|Q5LY91|RSMH_STRT1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|122267015|sp|Q03J09|RSMH_STRTD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|116101667|gb|ABJ66813.1| Predicted S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [Streptococcus thermophilus
           LMD-9]
 gi|312279018|gb|ADQ63675.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Streptococcus thermophilus ND03]
          Length = 316

 Score =  172 bits (436), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 111/309 (35%), Positives = 171/309 (55%), Gaps = 14/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           HV VLL + + +L+  P  + +DAT G  G+S       S   ++   D+D  A+   Q 
Sbjct: 7   HVTVLLHETVDMLDIKPDGIYVDATLGGAGHSSYLLSQLSEKGHLYCFDQDQKAIDNAQV 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            ++DY  K   +  +  F  L+  +   GV   DG+++DLGVSS Q+D  +RGFS+++  
Sbjct: 67  RLKDYIDKGMVTFIKDNFRNLKSNLEALGVSEIDGILYDLGVSSPQLDERERGFSYKQDA 126

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM+  + ++A DVVN     DL RI    GE+K + +IA  I + RQ  P +TT +
Sbjct: 127 KLDMRMNEEASLTAYDVVNTYPYNDLVRIFFKYGEDKFSKQIARKIEQARQVKPIETTTE 186

Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L+ +I K+   +K    + HPA + FQA+RI VN+E+    + ++ A   L   G + V+
Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQEALDLLAVDGRISVI 245

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F   S   V      IP +  P V   + +K ++P+QE++  N RS 
Sbjct: 246 TFHSLEDRLTKQLFKEASTVDVPKGLPFIPEDLQPKV-ALVNRKPILPSQEELEANNRSH 304

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 305 SAKLRVAKK 313


>gi|167912660|ref|ZP_02499751.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 112]
          Length = 313

 Score =  172 bits (436), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 117/311 (37%), Positives = 181/311 (58%), Gaps = 19/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMG--SNVIALDRDPFAVSCGQE 76
           H  VLL++ +  L      V +D TFG GG+SR+   ++G    +IA D+DP A+    E
Sbjct: 7   HRTVLLDEAVDALVTRLDGVYVDGTFGRGGHSRAVLARLGDAGRLIAFDKDPRAIETA-E 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           ++ D +  F +   +F+ ++  +  +G   V GV+ DLGVSS Q+D   RGFSF+ +GPL
Sbjct: 66  SIEDAR--FEIVHDSFAAMKGALDARGIGRVSGVLLDLGVSSPQVDDPARGFSFRANGPL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA----PFQTT 188
           DMRM  + G SA++ + +A+V++LT ++   GEE+ A +IA AIV RR  +    P  +T
Sbjct: 124 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRLGPLDST 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ ++   V   +  +  PATR+FQA+RI VN E+ +L   L +A   L+ GG L+V+
Sbjct: 184 GELAQIVGHVVKTREKGK-DPATRTFQAIRIHVNQELADLQVVLEAALSLLEQGGRLVVI 242

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH--PAVFQSITKKVVVPTQEDVAFNRRS 306
           SFHSLEDR+VK+F  + +    AV   +P  A   P     +  + + P   +VA N R+
Sbjct: 243 SFHSLEDRIVKRFLQAHA-SAPAVDRRLPIRAADLPRPPLKLLGR-MFPNDAEVAANPRA 300

Query: 307 RSAKLRAGMRT 317
           RSA +R   R 
Sbjct: 301 RSAVMRIAERV 311


>gi|116491168|ref|YP_810712.1| SAM-dependent methyltransferase for cell envelope biogenesis
           [Oenococcus oeni PSU-1]
 gi|290890684|ref|ZP_06553754.1| hypothetical protein AWRIB429_1144 [Oenococcus oeni AWRIB429]
 gi|122276650|sp|Q04ES5|RSMH_OENOB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|116091893|gb|ABJ57047.1| SAM-dependent methyltransferase for cell envelope biogenesis
           [Oenococcus oeni PSU-1]
 gi|290479659|gb|EFD88313.1| hypothetical protein AWRIB429_1144 [Oenococcus oeni AWRIB429]
          Length = 314

 Score =  172 bits (436), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 109/303 (35%), Positives = 169/303 (55%), Gaps = 10/303 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77
           HV V L + +  L      + +DAT G GG++    K  +  +V + D+D  A+   ++ 
Sbjct: 7   HVTVFLRQAVENLAVKTNGIYVDATLGGGGHTDLLLKKALHGHVYSFDQDENAIDFNKKR 66

Query: 78  M-RDYKE-QFSLFQATFSQL---QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             ++  E + SL  + F  L    + +    +DG+VFDLGVSS Q D   RGFS++    
Sbjct: 67  FSKEISEGRLSLIHSNFQNLIKELNLLKVFAIDGIVFDLGVSSPQFDDEKRGFSYRSDAR 126

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S  + A  +VN    KDL  I+   GEEK AS IA  I+KRR+  P  TT++L
Sbjct: 127 LDMRMDQSQSLDAYQIVNTWEYKDLASIINRYGEEKFASSIARKIIKRREVQPIITTEEL 186

Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
              I++ +     + + HPA ++FQA+RI VN+E+  L + L+ A + L +GG + V++F
Sbjct: 187 VETIKEALPDKILHKKGHPAKKTFQAIRIAVNDELNVLQEALKQASQLLNSGGRISVITF 246

Query: 251 HSLEDRLVKKFFASRSGK-VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
            SLEDR+VK FF   + K  +  +  +P       F+ +TK  ++P+ E++  N R+ SA
Sbjct: 247 QSLEDRIVKHFFNQLATKNQLPSKLPVPDKFIQEEFKLLTKHPLIPSVEEIEENHRAHSA 306

Query: 310 KLR 312
           KLR
Sbjct: 307 KLR 309


>gi|323343877|ref|ZP_08084104.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Prevotella oralis ATCC 33269]
 gi|323095696|gb|EFZ38270.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Prevotella oralis ATCC 33269]
          Length = 304

 Score =  172 bits (435), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 113/300 (37%), Positives = 163/300 (54%), Gaps = 16/300 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76
           H+PVLL++ I  LN  P  V +D TFG GG+SR   + +G N  + + D+D       Q 
Sbjct: 9   HIPVLLKESIDGLNIQPEGVYVDVTFGGGGHSREILRRLGKNGRLYSFDQD---ADAEQN 65

Query: 77  TMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + D   +F+  ++ F  L++   Y     +DG++ DLGVSS   D   RGFSF+ + PL
Sbjct: 66  IVAD--SRFTFVRSNFRYLKNWMRYYKIDHIDGLLADLGVSSHHFDDESRGFSFRFNAPL 123

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  +G +A+D+VN+ + + L  +  + GE K + RIA AIVK R +    TT+   
Sbjct: 124 DMRMNKRAGTTAADIVNKYDEETLANVFYLYGELKNSRRIAAAIVKARATYEIGTTRAFI 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
             I+    F +        + FQALRI VN+E+  L + L  A K L  GG L ++++HS
Sbjct: 184 DAIEPL--FKREREKKDMAKLFQALRIEVNHEMRALKEMLEGASKCLGTGGRLSIITYHS 241

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK     R+G V    H          F  I  KV+ P+ E+   N RSRSAKLR
Sbjct: 242 LEDRMVKNMM--RTGNVEGKLHQDFYGHIETPFVLINSKVITPSHEEQEQNPRSRSAKLR 299


>gi|50365212|ref|YP_053637.1| cell membrane substrate S-adenosyl-methyltransferase [Mesoplasma
           florum L1]
 gi|54036182|sp|Q6F170|RSMH_MESFL RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|50363768|gb|AAT75753.1| cell membrane substrate S-adenosyl-methyltransferase [Mesoplasma
           florum L1]
          Length = 308

 Score =  172 bits (435), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 109/306 (35%), Positives = 168/306 (54%), Gaps = 21/306 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77
           H+PVLL++ I  LN     + +D T G  G+S    K      + ++D+D  A+  G E 
Sbjct: 4   HIPVLLKESIEYLNIKENGIYVDCTLGRAGHSSEILKKLKDGKLFSIDQDETAILEGTEK 63

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +      F + +  F  +   +  +G   VDG+++DLGVSS Q D  +RGFS++  GPLD
Sbjct: 64  LTKISNNFKILEGNFVNISAMLAMQGIFEVDGILYDLGVSSPQFDVAERGFSYRFDGPLD 123

Query: 135 MRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           MRM  + + ++A  +VN+   ++L +IL   G+EK A  IA  I+  R   P  TT +L 
Sbjct: 124 MRMDRANNSLTAHKIVNEYTQEELEQILWNYGDEKFARSIAKNIILSR---PINTTFELV 180

Query: 193 SLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           S+I+K++     K  + HPA ++FQALRI VNNE+E L   L  +   LK  G ++V++F
Sbjct: 181 SVIKKSLPAKILKQQK-HPAKKTFQALRIRVNNEMETLESSLEQSLNLLKPKGRVVVITF 239

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305
           HSLE+++VK  F   +   +  +    SN    +     F+ + KK + PT  +V  N R
Sbjct: 240 HSLEEKVVKNIFKKYT---LDEQQFYLSNLPYEIESSKDFKLLFKKPLKPTNTEVENNNR 296

Query: 306 SRSAKL 311
           S SAKL
Sbjct: 297 SHSAKL 302


>gi|317129306|ref|YP_004095588.1| S-adenosyl-methyltransferase MraW [Bacillus cellulosilyticus DSM
           2522]
 gi|315474254|gb|ADU30857.1| S-adenosyl-methyltransferase MraW [Bacillus cellulosilyticus DSM
           2522]
          Length = 310

 Score =  172 bits (435), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 108/304 (35%), Positives = 170/304 (55%), Gaps = 11/304 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSN--VIALDRDPFAVSCGQ 75
           +H  VL E+ +  LN     V +D T G GG+S     M G+N  +I+ D+D  A+S  +
Sbjct: 3   EHETVLKEETVKGLNIHEDGVYVDCTLGGGGHSERIASMLGANGKLISFDQDEVALSHAK 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E +  ++++     + F  L+  +   G   VDG VFDLGVSS Q D  +RGFS++   P
Sbjct: 63  ERLAPFRDKIIFVHSNFQYLKQELTHLGYSSVDGFVFDLGVSSPQFDEPERGFSYRFDAP 122

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM     ++A +VVN    +D+ +++   GEE+ A  IA  I K R+ +P +TT +L
Sbjct: 123 LDMRMDRGQSLTAYEVVNNWPFEDIMKVISRYGEERFAKHIARKIEKAREVSPIKTTFEL 182

Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+  +   ++    HPA R+FQA+RI VN+E+    Q L  A       G + V++F
Sbjct: 183 VDIIKDAIPAPARRKGGHPAKRTFQAIRIAVNDELNVFEQALYDAIDMTTEKGRIAVITF 242

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+ K  F ++S      R +  IP +  P +   + KK ++ ++E++  N R++S
Sbjct: 243 HSLEDRICKHVFKNKSTPKDLPRGLPVIPESHKPELML-VNKKPILASEEELENNSRAQS 301

Query: 309 AKLR 312
           AKLR
Sbjct: 302 AKLR 305


>gi|303279384|ref|XP_003058985.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226460145|gb|EEH57440.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 295

 Score =  172 bits (435), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 112/292 (38%), Positives = 159/292 (54%), Gaps = 20/292 (6%)

Query: 38  KVILDATFGAGGYSRSFCKMGSNV-----IALDRDPFAVSCGQETMR--DYKEQFSLFQA 90
           K  +D T GAGG++ +   +G ++     +  D DP A +      R  +       F+A
Sbjct: 2   KTYVDGTMGAGGHACAV--IGEHLELVTFVGFDVDPLAHAIAPRGARVLELNTVLDNFRA 59

Query: 91  TFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM--SCSGISASDVV 148
              +L +   +  VD ++ DLGVSSM +D  +RGFSF   GPLDMRM  SC+  SA DVV
Sbjct: 60  MRFRLDELELNGKVDAILLDLGVSSMHLDSPERGFSFGNDGPLDMRMGPSCA-FSAMDVV 118

Query: 149 NQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT--VYFSKNNR 206
           N+   +D+ R++   GEEK    IA  I +RR  AP  TT  L   I +   V   ++  
Sbjct: 119 NEWPEEDIARVIRDYGEEKHWRLIARRICERRAEAPILTTSALVRAIGRVPGVKKGRSGN 178

Query: 207 IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRS 266
           +HPATR+FQ +RI VN+E+  +   + +A  AL  GG L V+SFHSLED++VK  F  R+
Sbjct: 179 VHPATRTFQGIRIAVNDELGAIEDAIPAAIDALAPGGRLGVISFHSLEDKIVKDIFRERA 238

Query: 267 GKVM-----AVRHMIP-SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           G+        V    P     P V + IT+K +   +++V  N RSRSAKLR
Sbjct: 239 GRAPPPDEGPVSAWAPQPEPPPKVVKLITRKPLSADEDEVRENARSRSAKLR 290


>gi|289426145|ref|ZP_06427891.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes SK187]
 gi|289153310|gb|EFD02025.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes SK187]
          Length = 337

 Score =  172 bits (435), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 111/305 (36%), Positives = 167/305 (54%), Gaps = 13/305 (4%)

Query: 20  HVPVLLEKVIALLN---PAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCG 74
           H+PV+  +++ LL     +  +V +D T G GG++ +  +   +V  + +DRD  A++  
Sbjct: 14  HIPVMRARILDLLAVVLKSGRRVHVDGTLGMGGHAEAVLRRFPDVELVGIDRDQQALTMA 73

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +  +  + ++  L  A   +L + + D G   VD V+ DLG+SS QID  +RGFS+    
Sbjct: 74  EARLESFADRVHLVHAVHDELPEVLDDLGLDYVDSVLLDLGLSSFQIDEVERGFSYSVDS 133

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM   SG +A+ ++N+++   L R+L   GEEK A RI  AIV  R   P +T+  
Sbjct: 134 PLDMRMDQSSGRTAAQILNESDPGALVRMLREYGEEKFADRIVRAIVTERDRQPIETSGR 193

Query: 191 LSSLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L  +I + +     +    HPA R+FQALRI VN E+E L   L  A   L  GG + V+
Sbjct: 194 LVEIITEAIPATVRRKRHSHPAKRTFQALRIAVNREMETLPAVLPRALDRLDVGGRIAVL 253

Query: 249 SFHSLEDRLVKKFFASRSGKVM-AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           S+HSLEDR VK+ F         A   M+P +   A F  +T+    P  ++VA N RS 
Sbjct: 254 SYHSLEDRPVKEAFRDACADTAPAGLPMVPESM-AAKFNPVTRGAERPDADEVATNPRSA 312

Query: 308 SAKLR 312
           SA+LR
Sbjct: 313 SARLR 317


>gi|260826594|ref|XP_002608250.1| hypothetical protein BRAFLDRAFT_87928 [Branchiostoma floridae]
 gi|229293601|gb|EEN64260.1| hypothetical protein BRAFLDRAFT_87928 [Branchiostoma floridae]
          Length = 280

 Score =  172 bits (435), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 99/236 (41%), Positives = 136/236 (57%), Gaps = 20/236 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H PV++ +V+  L+P PG+V +D TFGAGG++++      +  V A+DRDP A +  Q  
Sbjct: 3   HTPVMVREVLDCLDPQPGQVYVDMTFGAGGHTKAILAAQPDTVVYAIDRDPAAHNMAQNI 62

Query: 78  MRDYKEQFSLFQATFSQL-----QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            + Y +        FS+L        V +  VDG +FD+G SSMQ D G RGFS  + GP
Sbjct: 63  AKQYGKSIRPVLGRFSELLYLLSSQNVQENTVDGFLFDVGASSMQFDQGGRGFSLSQDGP 122

Query: 133 LDMRMSCSGI-----SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           LDMRM          +A+DVVN     DL  I+   GEEK A +I+ AIV  R   P  T
Sbjct: 123 LDMRMDGERFGNKQPTAADVVNSLGEDDLYGIIKTYGEEKHARKISSAIVDARNKIPITT 182

Query: 188 TQDL-----SSLIQKTVYFSK---NNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           T+ L     S+L    V+F+    N  +HPAT++FQALRIFVN+E+ EL QGL++A
Sbjct: 183 TKQLAGVVASALAPPGVFFAHDKLNRAVHPATKTFQALRIFVNDELNELYQGLQAA 238


>gi|332885960|gb|EGK06204.1| ribosomal RNA small subunit methyltransferase H [Dysgonomonas
           mossii DSM 22836]
          Length = 303

 Score =  172 bits (435), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 112/306 (36%), Positives = 172/306 (56%), Gaps = 18/306 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGS--NVIALDRDPFAVSCGQE 76
           H+PVLL + I  +N  P  + +D TFG GG+SR    ++G   ++ A D+D  A+   + 
Sbjct: 6   HIPVLLHESIDGMNIHPDSICVDVTFGGGGHSREILSRLGDKGHLYAFDQDEDAIKNIEP 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQ-KSGP 132
           +      +F+  ++ F  L++++    VDGV   + DLGVSS   D  DRGFSF+ +   
Sbjct: 66  S-----NKFTFIRSNFRYLKNFIKYHNVDGVDAILADLGVSSHHFDAEDRGFSFRFEDSD 120

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+   G +A+ ++N    + L  +  + GE KQ+ RIA  IVK R+  P++ T DL
Sbjct: 121 LDMRMNRKGGKTAAQILNTYTEEKLADVFYLYGELKQSRRIASVIVKTRKEKPYKKTSDL 180

Query: 192 SSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
            + +   V    K  +I    ++FQALRI VN E+E L + L  A   LK GG L V+++
Sbjct: 181 LATLNSFVGRGEKEKKI--LAQAFQALRIEVNEEMEVLKEMLTQALDILKPGGRLSVITY 238

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDR+VK FF + + +    +    +   P  F+ I  KV+ P++++   N RSRSAK
Sbjct: 239 HSLEDRIVKNFFKTGNFEGKVEKDFFGNFETP--FKLINNKVITPSKDEEERNPRSRSAK 296

Query: 311 LRAGMR 316
           LR   +
Sbjct: 297 LRVAEK 302


>gi|320535363|ref|ZP_08035477.1| S-adenosyl-methyltransferase MraW [Treponema phagedenis F0421]
 gi|320147765|gb|EFW39267.1| S-adenosyl-methyltransferase MraW [Treponema phagedenis F0421]
          Length = 317

 Score =  172 bits (435), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 112/304 (36%), Positives = 167/304 (54%), Gaps = 12/304 (3%)

Query: 20  HVPVLLEKVIALLNPA-PGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76
           H  VLL++ ++LL PA    + +D T G GG++ +F K    +  I +D DP   +  + 
Sbjct: 5   HKSVLLQESLSLLKPASEDTLFVDGTLGEGGHTEAFLKTYPQLSAIGIDADPTIQAKAKL 64

Query: 77  TMRDYKEQFSLFQAT----FSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            ++ +  +   F       F       P   +  ++FDLG+S        RGFSFQ   P
Sbjct: 65  RLQPFASRVQYFSGWSDDFFKNYSTEYPKPNI--ILFDLGISMFHYIESGRGFSFQAEEP 122

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMR++  + +SA++++N    ++L  I    GEE+ + +IA AI  RR+   F+T  DL
Sbjct: 123 LDMRINPATSLSAAEIINTYKEEELASIFYTYGEERFSRKIAGAICLRRKEQEFKTAGDL 182

Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           + +I K V  + ++ RIHPATRSFQALRI VN E++ L   L+ A + L   G L V+SF
Sbjct: 183 AEVIFKAVPPAYRHGRIHPATRSFQALRIKVNGELDRLPDLLKLAFQRLALNGKLGVISF 242

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK++F   +        M I       + Q +T K V+PT E++  N  SRSA
Sbjct: 243 HSLEDRIVKRYFRDLAKNCRCPPEMPICKCGGRPLAQLLTGKPVIPTDEEIRVNPASRSA 302

Query: 310 KLRA 313
           KLRA
Sbjct: 303 KLRA 306


>gi|299142294|ref|ZP_07035427.1| S-adenosyl-methyltransferase MraW [Prevotella oris C735]
 gi|298576383|gb|EFI48256.1| S-adenosyl-methyltransferase MraW [Prevotella oris C735]
          Length = 315

 Score =  172 bits (435), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 114/306 (37%), Positives = 168/306 (54%), Gaps = 17/306 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSC--- 73
           HVPVLL+  +  LN   G + +D TFG GG+SR       N   + + D+D  A      
Sbjct: 9   HVPVLLKPSVDGLNIQSGGIYVDVTFGGGGHSREILSRLDNQAHLYSFDQDADAEQNVMH 68

Query: 74  --GQETMRDYKE-QFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSF 127
             G    R   + +F+  ++ F  L++++   GV   DG++ DLGVSS   D   RGFSF
Sbjct: 69  REGSTEKRFVDDARFTFVRSNFRYLKNWMRYYGVEKIDGLLADLGVSSHHFDDESRGFSF 128

Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           +   PLDMRM+  +G++A+DVVN  N + L  +  + GE KQ+ RIA A++K R      
Sbjct: 129 RFDAPLDMRMNKRAGLTAADVVNDYNEEALANLFYLYGELKQSRRIAAALIKARAQQRIA 188

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           TTQD   L      F +        + FQALRI VN+E++ L + L+SA + L++GG L 
Sbjct: 189 TTQDF--LKATEPLFKREREKKDMAKLFQALRIEVNHEMDALKEMLQSATELLRSGGRLS 246

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+++HSLEDR+VK    + + +   V+        P  F  +  KV+VP+ ++   N RS
Sbjct: 247 VITYHSLEDRIVKNMMKAGNAEGKKVQDFYGRIETP--FNLVNNKVIVPSADEQQENPRS 304

Query: 307 RSAKLR 312
           RSAKLR
Sbjct: 305 RSAKLR 310


>gi|255015714|ref|ZP_05287840.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 2_1_7]
          Length = 305

 Score =  172 bits (435), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 111/301 (36%), Positives = 169/301 (56%), Gaps = 17/301 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76
           HVPV+L + +  L+  P  + +D TFG GG+SR   K +GS   +   D+D  A     E
Sbjct: 9   HVPVMLRESLEGLDIRPDGIYVDVTFGGGGHSREILKRLGSEGELYGFDQDADA-----E 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  +F+  ++ F  L +++   G    VDG++ DLGVSS   D  DRGFSF+  G 
Sbjct: 64  HNIPADPRFTFVRSNFRYLYNFMRYYGESGEVDGLLADLGVSSHHFDDKDRGFSFRFDGA 123

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+  +G +A+D+VN    + L  +  + GE K + ++A  +VK R++   +T  D 
Sbjct: 124 LDMRMNTRAGQTAADIVNNYTAEALADVFYLYGELKVSRKLASVLVKARETKKIETIGDF 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             +I+   +  K+       + FQALRI VN+E+  L + LRS  + L+ GG L+V+++H
Sbjct: 184 LEVIKP--FTGKDKEKKFLAQVFQALRIEVNDEMRALKEMLRSTLRVLRPGGRLVVITYH 241

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDRLVK F  + + +    +    +   P  F+ +  KV+VPT E+V  N RSRSAKL
Sbjct: 242 SLEDRLVKNFLKTGNFEGKCEQDFFGNVRSP--FRLVNNKVIVPTDEEVERNPRSRSAKL 299

Query: 312 R 312
           R
Sbjct: 300 R 300


>gi|262383993|ref|ZP_06077129.1| methylase MraW [Bacteroides sp. 2_1_33B]
 gi|262294891|gb|EEY82823.1| methylase MraW [Bacteroides sp. 2_1_33B]
          Length = 305

 Score =  172 bits (435), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 110/301 (36%), Positives = 170/301 (56%), Gaps = 17/301 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76
           HVPV+L + +  L+  P  + +D TFG GG+SR   K +GS   +   D+D  A     E
Sbjct: 9   HVPVMLRESLEGLDIRPDGIYVDVTFGGGGHSRKILKRLGSEGELYGFDQDADA-----E 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  +F+  ++ F  L +++   G    VDG++ DLGVSS   D  DRGFSF+  G 
Sbjct: 64  HNVPADPRFTFVRSNFRYLYNFMRYYGESGEVDGLLADLGVSSHHFDDKDRGFSFRFDGA 123

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+  +G +A+D+VN    + L  +  + GE K + ++A  +VK R++   +T ++ 
Sbjct: 124 LDMRMNTRAGQTAADIVNNYTAEALADVFYLYGELKVSRKLASVLVKARETKKIETIEEF 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             +I+   +  K+       + FQALRI VN+E+  L + LRS  + L+ GG L+V+++H
Sbjct: 184 LEVIKP--FTGKDKEKKFLAQVFQALRIEVNDEMRALKEMLRSTLRVLRPGGRLVVITYH 241

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDRLVK F  + + +    +    +   P  F+ +  KV+VPT E+V  N RSRSAKL
Sbjct: 242 SLEDRLVKNFLKTGNFEGKCEQDFFGNVRSP--FRLVNNKVIVPTDEEVERNPRSRSAKL 299

Query: 312 R 312
           R
Sbjct: 300 R 300


>gi|315604430|ref|ZP_07879496.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315314136|gb|EFU62187.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 341

 Score =  172 bits (435), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 113/308 (36%), Positives = 175/308 (56%), Gaps = 18/308 (5%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCG 74
           HVPVLL + + +L PA   PG V++DAT G GG++    +   +  VI +DRDP A++  
Sbjct: 25  HVPVLLSECLDMLAPAIGAPGAVLVDATLGMGGHTEGALERFEDLTVIGIDRDPQAIALA 84

Query: 75  QETMRDYKEQFSLFQATFSQLQDYV-----PDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
            + +  +  +F    AT+  +   +     P   VDG++ DLGVSS+Q+D  DRGF++ K
Sbjct: 85  SDRLERFGARFRAVHATYDHIDRVIEEQCGPGSRVDGILMDLGVSSLQLDEADRGFAYSK 144

Query: 130 SGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM   +G SA+D++  A+  ++ RIL   GEE+ A RIA  I++RR  AP   T
Sbjct: 145 DAPLDMRMDPTTGPSAADLLASASEGEIVRILRTYGEERFAPRIARLIIRRRDEAPITRT 204

Query: 189 QDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L  +++  +   ++ +  +PA R+FQALR+ VN+E+  L + L  A  +L+ GG L+V
Sbjct: 205 GELVDIVRSAIPAPARRSGGNPAKRTFQALRVAVNDELTILERALPRALASLRVGGRLVV 264

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVR---HMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
            ++ SLEDR+VK     R G   A      ++P    P+  + +TK      Q +   N 
Sbjct: 265 EAYQSLEDRIVKDVL--RRGATSAAPPGLPIVPDEMAPS-LRLLTKGANRADQAEQDHNP 321

Query: 305 RSRSAKLR 312
           RS S +LR
Sbjct: 322 RSASVRLR 329


>gi|312863799|ref|ZP_07724037.1| S-adenosyl-methyltransferase MraW [Streptococcus vestibularis
           F0396]
 gi|311101335|gb|EFQ59540.1| S-adenosyl-methyltransferase MraW [Streptococcus vestibularis
           F0396]
          Length = 316

 Score =  172 bits (435), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 111/309 (35%), Positives = 171/309 (55%), Gaps = 14/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           HV VLL + + +L+  P  + +DAT G  G+S       S   ++   D+D  A+   Q 
Sbjct: 7   HVTVLLHETVDMLDIKPDGIYVDATLGGAGHSSYLLSQLSEKGHLYCFDQDQKAIDNAQV 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            ++DY  K   +  +  F  L+  +   GV   DG+++DLGVSS Q+D  +RGFS+++  
Sbjct: 67  RLKDYIDKGMVTFIKDNFRNLRSNLEALGVFEIDGILYDLGVSSPQLDERERGFSYKQDA 126

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM+  + ++A DVVN     DL RI    GE+K + +IA  I + RQ  P +TT +
Sbjct: 127 KLDMRMNEEASLTAYDVVNTYPYNDLVRIFFKYGEDKFSKQIARKIEQARQVKPIETTTE 186

Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L+ +I K+   +K    + HPA + FQA+RI VN+E+    + ++ A   L   G + V+
Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQEALDLLAVDGRISVI 245

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F   S   V      IP +  P V   + +K ++P+QE++  N RS 
Sbjct: 246 TFHSLEDRLTKQLFKEASTVDVPKGLPFIPEDLQPKV-ALVNRKPILPSQEELEANNRSH 304

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 305 SAKLRVAKK 313


>gi|154509049|ref|ZP_02044691.1| hypothetical protein ACTODO_01566 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798683|gb|EDN81103.1| hypothetical protein ACTODO_01566 [Actinomyces odontolyticus ATCC
           17982]
          Length = 335

 Score =  172 bits (435), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 118/309 (38%), Positives = 173/309 (55%), Gaps = 18/309 (5%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74
           HVPVLL + + +L PA   PG V++D T G GG++    +   G  VI +DRDP A+   
Sbjct: 19  HVPVLLRECLDMLAPAIKRPGAVLVDGTLGMGGHTEGALERFEGLTVIGIDRDPQAIELA 78

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRGFSFQK 129
              +  +  +F     T+  +   V ++      VDGV+ DLGVSS+Q+D  DRGF++ K
Sbjct: 79  SARLERFGTRFRAVHTTYDNIDVAVEEQLGTGARVDGVLMDLGVSSLQLDEADRGFAYSK 138

Query: 130 SGPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM + SG SA+D++  ++  +L RIL   GEEK A RIA  I++RR  AP   T
Sbjct: 139 DAPLDMRMDATSGQSAADLLATSSEGELIRILRTYGEEKFAPRIARLIIRRRDDAPITRT 198

Query: 189 QDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L  +I++ +   ++    +PA R+FQALR+ VN+E+  L + L  A  +L+ GG L+V
Sbjct: 199 GELVGIIREAIPAPARRTGGNPAKRTFQALRVAVNDELTILERALPRALSSLRVGGRLVV 258

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVR---HMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
            S+ SLEDR+VK     R G   A      +IP    P+  + +TK      Q +   N 
Sbjct: 259 ESYQSLEDRIVKDVL--RRGSTSAAPPGLPVIPDEMAPS-LRLLTKGANKADQAEQDHNP 315

Query: 305 RSRSAKLRA 313
           RS S +LR 
Sbjct: 316 RSASVRLRG 324


>gi|260910904|ref|ZP_05917546.1| S-adenosyl-methyltransferase MraW [Prevotella sp. oral taxon 472
           str. F0295]
 gi|260634961|gb|EEX53009.1| S-adenosyl-methyltransferase MraW [Prevotella sp. oral taxon 472
           str. F0295]
          Length = 319

 Score =  172 bits (435), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 113/309 (36%), Positives = 173/309 (55%), Gaps = 19/309 (6%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYS-RSFCKMGSN--VIALDRDPFAV--- 71
           G HVPVLL + +  LN   G V +D TFG GG++     KM +   + + D+D  A    
Sbjct: 11  GYHVPVLLAESVDALNIFKGGVYVDVTFGGGGHTCHILSKMDATARLFSFDQDADAEENT 70

Query: 72  ----SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRG 124
               S GQ  + +   +F+  ++ F  L +++   GV   DG++ DLGVSS   D  +RG
Sbjct: 71  RREGSEGQSPLAN-DNRFTFVRSNFRYLDNWMRYYGVEHVDGILADLGVSSHHFDDQERG 129

Query: 125 FSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           FSF+   PLDMRM+ +  ++A+ V+N  + + L  +  + GE +Q+ RIA AIVK R  A
Sbjct: 130 FSFRFDAPLDMRMNKNATLTAAQVLNTYDEEKLADVFFLYGEIRQSRRIASAIVKARAKA 189

Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
              TTQ+ +++++   +F          + FQALRI VNNE++ L + L++A + L  GG
Sbjct: 190 AVHTTQEFAAIVEP--FFKLEREKKEMAKLFQALRIEVNNEMDALKEMLQAASEWLGKGG 247

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            L V+++HSLEDR+VK F  + + +    +        P  F  +  KV+VPT ++   N
Sbjct: 248 RLSVITYHSLEDRMVKNFMKTGNVEGKLSQDFFGRAQTP--FTLVNNKVIVPTADEQLRN 305

Query: 304 RRSRSAKLR 312
            RSRSAKLR
Sbjct: 306 PRSRSAKLR 314


>gi|319440248|ref|ZP_07989404.1| 16S rRNA m(4)C1402 methyltranserfase [Corynebacterium variabile DSM
           44702]
          Length = 340

 Score =  172 bits (435), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 97/267 (36%), Positives = 157/267 (58%), Gaps = 23/267 (8%)

Query: 20  HVPVLLEKVIALLNP------APGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAV 71
           HVPV+ ++++ L+        A   VI+D T GAGG++  F +   +  V+ LDRDP A+
Sbjct: 14  HVPVMRDRMVELVGAGVEGTGATRPVIVDGTLGAGGHTEVFLETFPDAVVVGLDRDPNAI 73

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPD-------------KGVDGVVFDLGVSSMQI 118
           +  Q+ +  + ++F  ++  F  L D + D              GV G +FDLGVSSMQ+
Sbjct: 74  AQAQDRLARFGDRFIAYRTRFDGLGDALDDLASDGRLPGEFATTGVSGYLFDLGVSSMQL 133

Query: 119 DCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177
           D  +RGF++ +  PLDMRM   S ++A++V+N  +  DL  +L   G+E+ A +IA A++
Sbjct: 134 DQAERGFAYSQDAPLDMRMDPDSPLTAAEVLNTYSHGDLAHVLSAYGDERFAGKIASAVL 193

Query: 178 KRRQSAPFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236
           + R+  PF T+  L  L+ +T+   ++    HPA R+FQALR+ VN E++ LA  + +A 
Sbjct: 194 REREQEPFTTSGRLVELLYRTIPAATRRTGGHPAKRTFQALRVEVNAELDSLAAVIPAAT 253

Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFA 263
             L  GG+ + +S+ SLED++VKK  A
Sbjct: 254 ARLGLGGVAVFMSYQSLEDKIVKKALA 280


>gi|226226826|ref|YP_002760932.1| putative S-adenosyl-methyltransferase [Gemmatimonas aurantiaca
           T-27]
 gi|263447553|sp|C1A8A2|RSMH_GEMAT RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|226090017|dbj|BAH38462.1| putative S-adenosyl-methyltransferase [Gemmatimonas aurantiaca
           T-27]
          Length = 315

 Score =  172 bits (435), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 109/300 (36%), Positives = 170/300 (56%), Gaps = 10/300 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           HVPVLL ++  +L  A    +LD T G GG++ +F + G  V  +DRDP A++  +E + 
Sbjct: 16  HVPVLLSEIETML--ANATTVLDCTLGGGGHTAAFLERGVRVTGVDRDPRALAAARERLG 73

Query: 80  DYKE--QFSLFQATFSQLQD--YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           +Y+   QF    A ++ L++  +  D   DG++ DLGVSS Q D   RGF+F++  PLDM
Sbjct: 74  EYERSGQFRAVLANYAALEEAGFSTDDRFDGILLDLGVSSHQFDDASRGFTFREGAPLDM 133

Query: 136 RMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM     + A +++N  +  DL+ +L    +E +A+R+A  IV+RR+  PF T  DL   
Sbjct: 134 RMGTDADLDAGELLNTIDEVDLSALLRAYADEPRAARMAREIVRRRERRPFATADDLVDA 193

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           I+  +     +      R FQA+RI VN+E+  L + L +    L  GG+L ++S+HS E
Sbjct: 194 IRAVL--GPRSGAPDFARIFQAVRIAVNDELSGLERALPALRDRLTPGGVLAIISYHSGE 251

Query: 255 DRLVKKFFASRSGK-VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           DRLVK  F   S   V   R  + +     +  +IT+K V  T++++  N R+RSA+LRA
Sbjct: 252 DRLVKNAFRDWSASCVCPPRQFVCTCRGRPLGDTITRKPVSATEQEIDQNTRARSARLRA 311


>gi|302849292|ref|XP_002956176.1| hypothetical protein VOLCADRAFT_97159 [Volvox carteri f.
           nagariensis]
 gi|300258479|gb|EFJ42715.1| hypothetical protein VOLCADRAFT_97159 [Volvox carteri f.
           nagariensis]
          Length = 305

 Score =  172 bits (435), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 113/320 (35%), Positives = 163/320 (50%), Gaps = 55/320 (17%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETMR- 79
           +L +V+    P    V LD T GAGG++            ++ +D DP A    +  +R 
Sbjct: 1   MLNEVLDAFQPVTLNVYLDCTLGAGGHAAKIASAHPEMQMLLGIDLDPTAHVVAEPRIRA 60

Query: 80  -----DYKEQFSLFQATFSQLQDYV-----PDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
                  +    L +  +  L+  +     P    +G++ DLG+SSMQID  DRGFSF +
Sbjct: 61  EAAGRSARLDVRLLRGNYRDLKRLLATVSTPSPRPNGILMDLGISSMQIDTADRGFSFMR 120

Query: 130 SGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM   + +SA +V+N  +  +L RI+   GEEK    +A  IV+ R+ AP +TT
Sbjct: 121 DGPLDMRMDPTAALSAEEVLNTWSEAELGRIIRDFGEEKLWKVVARRIVQAREVAPIRTT 180

Query: 189 QDLSSLIQKTVYFSKNNR------IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           Q L   + +T    K+ R      IHPATR+FQALRI VN+E+++L + L  A  AL  G
Sbjct: 181 QQLVKAVGQTQLVGKSPRKASAKGIHPATRTFQALRIAVNDELQKLEKTLPDAIDALAPG 240

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G L V+SFHSLEDR+VK  F   +G+        P+                P +E++ +
Sbjct: 241 GRLAVISFHSLEDRIVKHAFMRAAGR--------PT----------------PEEENLVY 276

Query: 303 ----------NRRSRSAKLR 312
                     N R+RSAKLR
Sbjct: 277 GQDNALETEANARARSAKLR 296


>gi|300864772|ref|ZP_07109623.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Oscillatoria sp. PCC 6506]
 gi|300337241|emb|CBN54771.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Oscillatoria sp. PCC 6506]
          Length = 306

 Score =  171 bits (434), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 115/305 (37%), Positives = 161/305 (52%), Gaps = 26/305 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVS-CGQE 76
           H+PVL  ++I  L    G   LDAT G GG++R       +V  +A+D+D  A++ C Q+
Sbjct: 22  HIPVLGPQLIEGLAVRAGGHYLDATVGGGGHTRLILAAAPDVTIVAIDQDLDAIAFCKQQ 81

Query: 77  TMRDYKEQFSLFQATFSQLQDY-VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
                    +  Q        Y   +   DG++ DLGVSS Q+D   RGFSF+    LDM
Sbjct: 82  LAEFLAPNSARIQFWHGNFASYPAKESTFDGIIADLGVSSAQLDAPGRGFSFRHHANLDM 141

Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM+    ++A+++VN      L  I    GEE+ + RIA  IV  R   PFQTT +L+  
Sbjct: 142 RMNQQQSLTAAEIVNHWEEVKLADIFYTYGEERLSRRIARRIVGDR---PFQTTTELAEA 198

Query: 195 IQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           I + V    +  RIHPATR+FQALRI VN+E+  +   L+ A + LK GG + ++SFHSL
Sbjct: 199 IARCVPPKYRYGRIHPATRTFQALRIAVNSELTAVETFLKQAPQWLKPGGRMGIISFHSL 258

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           EDRL K      S                 + + +TKK + P  E+VA N R+RSAKLR 
Sbjct: 259 EDRLAKHELKGSS-----------------LLRVLTKKPIQPATEEVAKNPRARSAKLRL 301

Query: 314 GMRTV 318
             R +
Sbjct: 302 AERLI 306


>gi|60679854|ref|YP_209998.1| S-adenosyl-methyltransferase MraW [Bacteroides fragilis NCTC 9343]
 gi|265764988|ref|ZP_06093263.1| MraW methylase [Bacteroides sp. 2_1_16]
 gi|81317074|sp|Q5LIJ0|RSMH_BACFN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|60491288|emb|CAH06036.1| putative S-adenosyl-methyltransferase [Bacteroides fragilis NCTC
           9343]
 gi|263254372|gb|EEZ25806.1| MraW methylase [Bacteroides sp. 2_1_16]
          Length = 304

 Score =  171 bits (434), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 108/300 (36%), Positives = 166/300 (55%), Gaps = 16/300 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HVPVLL++ +  +N +P    +D TFG GG+SR        G  ++  D+D       + 
Sbjct: 9   HVPVLLKESVDAMNISPDGTYVDVTFGGGGHSREILSRLGDGGRLLGFDQDE---DAERN 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYV--PDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + D    F+  ++ F  L +++   D G VD ++ DLGVSS   D  +RGFSF+  G L
Sbjct: 66  IVND--PHFTFVRSNFRYLHNFLRYHDIGEVDAILADLGVSSHHFDDSERGFSFRFDGKL 123

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  +GI+A+DVVN    + L  I  + GE K + ++A  IVK R     +T  +  
Sbjct: 124 DMRMNKRAGITAADVVNTYEEERLADIFYLYGELKNSRKLASVIVKARTGQKIETIGEFL 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I+    F +        + FQALRI VN E+E L + L +A +ALK GG L+V+++HS
Sbjct: 184 EIIKP--LFGREREKKELAKIFQALRIEVNQEMEALKEMLMAATEALKPGGRLVVITYHS 241

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK    + + +    +    +   P  F+ +  KV+VP ++++  N RSRSAKLR
Sbjct: 242 LEDRMVKNIMKTGNVEGKTTQDFFGNLQTP--FRLVNNKVIVPDEDEITRNPRSRSAKLR 299


>gi|227833499|ref|YP_002835206.1| S-adenosyl-methyltransferase [Corynebacterium aurimucosum ATCC
           700975]
 gi|262184487|ref|ZP_06043908.1| S-adenosyl-methyltransferase MraW [Corynebacterium aurimucosum ATCC
           700975]
 gi|263446134|sp|C3PHG4|RSMH_CORA7 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|227454515|gb|ACP33268.1| S-adenosyl-methyltransferase [Corynebacterium aurimucosum ATCC
           700975]
          Length = 347

 Score =  171 bits (434), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 111/316 (35%), Positives = 172/316 (54%), Gaps = 24/316 (7%)

Query: 20  HVPVLLEKVIALLNPA-----PGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVS 72
           HVPV+  ++  LL PA        VI+D T GAGG+S  F     +V  I +DRD  ++S
Sbjct: 17  HVPVMRARMAQLLAPAIEAAGENAVIVDGTLGAGGHSEYFLTTFPSVRIIGVDRDSASLS 76

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD-----------KGVDGVVFDLGVSSMQIDCG 121
                +  + ++F    A F ++   + +            G+ G +FDLGVSSMQ+D  
Sbjct: 77  SASRRLSPFADRFVGVNARFDEVGSAIAEGESEVFSIAREHGIAGALFDLGVSSMQLDQV 136

Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           DRGF+++   PLDMRM    G++A+D++N  +  DL RIL   G+E+ A +IA A+++ R
Sbjct: 137 DRGFAYKTDAPLDMRMDPRQGMTAADILNTYSHGDLARILKTYGDERFAGKIASAVLRER 196

Query: 181 QSAPFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
           +  PF  +  L  L+  T+   ++    HPA R+FQALR+ VN E+E + Q +     AL
Sbjct: 197 EKEPFGNSARLVDLLYATIPAATRRTGGHPAKRTFQALRVEVNRELEAIEQVIPVITDAL 256

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297
             GG  + +S+ SLEDR+VK  F   S S     +   +P  A  A +  +T+     +Q
Sbjct: 257 SIGGRAVFMSYQSLEDRIVKHAFTKLSTSTTPAGLPMDLPGTA--AHYSVVTRGAEKASQ 314

Query: 298 EDVAFNRRSRSAKLRA 313
           E++A N R+ S ++RA
Sbjct: 315 EEIAENPRAASVRVRA 330


>gi|297539600|ref|YP_003675369.1| S-adenosyl-methyltransferase MraW [Methylotenera sp. 301]
 gi|297258947|gb|ADI30792.1| S-adenosyl-methyltransferase MraW [Methylotenera sp. 301]
          Length = 316

 Score =  171 bits (434), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 118/313 (37%), Positives = 171/313 (54%), Gaps = 25/313 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQE 76
           H+ VLLE+ +  L      V +D TFG GG+SR    K+GS+  +IA DRD  A+   +E
Sbjct: 11  HITVLLEEAVQALAIKADGVYVDGTFGRGGHSRKILEKLGSSGRLIAFDRDLKAIESSKE 70

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +FS+  + F+ +Q  + + GV   DG++ DLG+SS QID   RGFSF+   PL
Sbjct: 71  IT---DPRFSMVHSHFAGMQAELSEMGVSKVDGILLDLGISSPQIDDASRGFSFRYDAPL 127

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA-PFQTTQDL 191
           DMRM   SG +A+D +     + L  ++   GEE+ A +IA AI+  R       TT  L
Sbjct: 128 DMRMDQSSGQTAADFLANTTEQHLGEVIKNYGEERFAKQIARAIITERNDGRAITTTGQL 187

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++   V   +  + +PATR+FQALRI+VN E+EEL+  +      L   G L V+SFH
Sbjct: 188 AKVVAGAVTRFEPGQ-NPATRTFQALRIYVNQELEELSLTMPQCLALLAPQGRLAVISFH 246

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK-------KVVVPTQEDVAFNR 304
           SLEDR+VK+F   +       R  +P+N  P     + +       K + P+ ++V  N 
Sbjct: 247 SLEDRIVKQFIRDQEN-----RDDLPAN-FPVRAADLPQPKLKGVGKTIKPSTKEVKANP 300

Query: 305 RSRSAKLRAGMRT 317
           RSRSA LR   RT
Sbjct: 301 RSRSAVLRVAERT 313


>gi|261337512|ref|ZP_05965396.1| S-adenosyl-methyltransferase MraW [Bifidobacterium gallicum DSM
           20093]
 gi|270277911|gb|EFA23765.1| S-adenosyl-methyltransferase MraW [Bifidobacterium gallicum DSM
           20093]
          Length = 356

 Score =  171 bits (434), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 114/313 (36%), Positives = 163/313 (52%), Gaps = 13/313 (4%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSN--VIALDRD 67
           + H    H PVLLE+ + L+ PA   PG V++D T G  G++ +F K   N  ++ +DRD
Sbjct: 1   MDHITQIHQPVLLEQCVDLVVPALNAPGSVVVDCTLGLAGHATAFLKAAPNATLLGIDRD 60

Query: 68  PFAVSCGQETMRD--YKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGD 122
             A++   + M      ++F    A F      V   G   V  V  DLG+SS+QID  +
Sbjct: 61  AEALALATQRMEHEGLADRFIAVHAAFDDFGQAVDAHGLGPVQAVFMDLGLSSLQIDETE 120

Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFS+    PLDMRM  +  ++A  ++   +   L RI    GEE+ A +IA  IV  R 
Sbjct: 121 RGFSYSHDAPLDMRMDTTQPLTAQTILATYDEASLARIFKDYGEERFARQIARRIVSTRN 180

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
             P  T+  L+ L+   +  +     +PA R FQALRI VN E+++L + L      L  
Sbjct: 181 REPLTTSAQLNRLVDAVIPQAHRASGNPAKRVFQALRIEVNGELDKLRRTLPQIANRLAV 240

Query: 242 GGLLIVVSFHSLEDRLVKKFF-ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300
           GG L+V S+HSLEDR VK F     S  V A   +IP +A P  F ++TK  +    E++
Sbjct: 241 GGRLVVESYHSLEDRTVKTFMQQGLSIDVPADMPVIPDDAQP-FFSALTKGALKADAEEI 299

Query: 301 AFNRRSRSAKLRA 313
             N RS S +LRA
Sbjct: 300 EHNPRSASVRLRA 312


>gi|295130325|ref|YP_003580988.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes SK137]
 gi|291376254|gb|ADE00109.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes SK137]
 gi|313764743|gb|EFS36107.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL013PA1]
 gi|313791793|gb|EFS39904.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL110PA1]
 gi|313802120|gb|EFS43352.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL110PA2]
 gi|313807237|gb|EFS45724.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL087PA2]
 gi|313809743|gb|EFS47464.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL083PA1]
 gi|313813215|gb|EFS50929.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL025PA1]
 gi|313815808|gb|EFS53522.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL059PA1]
 gi|313818283|gb|EFS55997.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL046PA2]
 gi|313820045|gb|EFS57759.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL036PA1]
 gi|313823146|gb|EFS60860.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL036PA2]
 gi|313825577|gb|EFS63291.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL063PA1]
 gi|313827816|gb|EFS65530.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL063PA2]
 gi|313838452|gb|EFS76166.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL086PA1]
 gi|314915234|gb|EFS79065.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL005PA4]
 gi|314918537|gb|EFS82368.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL050PA1]
 gi|314919800|gb|EFS83631.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL050PA3]
 gi|314925467|gb|EFS89298.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL036PA3]
 gi|314931815|gb|EFS95646.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL067PA1]
 gi|314955971|gb|EFT00369.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL027PA1]
 gi|314958366|gb|EFT02469.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL002PA1]
 gi|314960282|gb|EFT04384.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL002PA2]
 gi|314963091|gb|EFT07191.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL082PA1]
 gi|314978268|gb|EFT22362.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL072PA2]
 gi|314987732|gb|EFT31823.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL005PA2]
 gi|314990211|gb|EFT34302.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL005PA3]
 gi|315077555|gb|EFT49613.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL053PA2]
 gi|315080339|gb|EFT52315.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL078PA1]
 gi|315084598|gb|EFT56574.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL027PA2]
 gi|315085934|gb|EFT57910.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL002PA3]
 gi|315088648|gb|EFT60624.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL072PA1]
 gi|315098257|gb|EFT70233.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL059PA2]
 gi|315101052|gb|EFT73028.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL046PA1]
 gi|315108244|gb|EFT80220.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL030PA2]
 gi|327332217|gb|EGE73954.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL096PA3]
 gi|327442839|gb|EGE89493.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL013PA2]
 gi|327451061|gb|EGE97715.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL087PA3]
 gi|327452857|gb|EGE99511.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL092PA1]
 gi|327453584|gb|EGF00239.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL083PA2]
 gi|328753094|gb|EGF66710.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL087PA1]
 gi|328753749|gb|EGF67365.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL020PA1]
 gi|328759161|gb|EGF72777.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL025PA2]
 gi|332675167|gb|AEE71983.1| ribosomal RNA small subunit methyltransferase H [Propionibacterium
           acnes 266]
          Length = 337

 Score =  171 bits (434), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 111/305 (36%), Positives = 167/305 (54%), Gaps = 13/305 (4%)

Query: 20  HVPVLLEKVIALLN---PAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCG 74
           H+PV+  +++ LL     +  +V +D T G GG++ +  +   +V  + +DRD  A++  
Sbjct: 14  HIPVMRARILDLLAVVLKSGRRVHVDGTLGMGGHAEAVLRRFPDVELVGIDRDQQALTMA 73

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +  +  + ++  L  A   +L + + D G   VD V+ DLG+SS QID  +RGFS+    
Sbjct: 74  EARLEPFADRVHLVHAVHDELPEVLDDLGLDYVDSVLLDLGLSSFQIDEVERGFSYSVDS 133

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM   SG +A+ ++N+++   L R+L   GEEK A RI  AIV  R   P +T+  
Sbjct: 134 PLDMRMDQSSGRTAAQILNESDPGALVRMLREYGEEKFADRIVRAIVTERDRQPIETSGR 193

Query: 191 LSSLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L  +I + +     +    HPA R+FQALRI VN E+E L   L  A   L  GG + V+
Sbjct: 194 LVEIITEAIPATVRRKRHSHPAKRTFQALRIAVNREMETLPAVLPRALDRLDVGGRIAVL 253

Query: 249 SFHSLEDRLVKKFFASRSGKVM-AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           S+HSLEDR VK+ F         A   M+P +   A F  +T+    P  ++VA N RS 
Sbjct: 254 SYHSLEDRPVKEAFRDACADTAPAGLPMVPESM-AAKFNPVTRGAERPDADEVATNPRSA 312

Query: 308 SAKLR 312
           SA+LR
Sbjct: 313 SARLR 317


>gi|332362961|gb|EGJ40750.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus sanguinis SK49]
          Length = 316

 Score =  171 bits (434), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 106/309 (34%), Positives = 176/309 (56%), Gaps = 14/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGS--NVIALDRDPFAVSCGQE 76
           H+ VLL + +  L   P  + +DAT G  G+S     ++G   ++ A D+D  A+   ++
Sbjct: 7   HITVLLHETVDQLAVKPDGIYVDATLGGAGHSEYLLSQLGDEGHLYAFDQDQTAIDNAKK 66

Query: 77  TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y E+   +  +  F  L+  + + GV   DG+ +DLGVSS Q+D  +RGFS+++  
Sbjct: 67  RLAPYIERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQRERGFSYKQDA 126

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+C + ++A +VVN  + +DL RI    GE+K + +IA  I + R   P +TT +
Sbjct: 127 PLDMRMNCDAALTAFEVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQARSVKPIETTTE 186

Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L+ +I K+   +K    + HPA + FQA+RI VN+E+    + ++ A   L   G + V+
Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDLLAVDGRIAVI 245

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F   S   V      IP    P + + +++K ++P++E++  N R+ 
Sbjct: 246 TFHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKL-ELVSRKPILPSKEELESNNRAH 304

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 305 SAKLRVARK 313


>gi|257061938|ref|YP_003139826.1| S-adenosyl-methyltransferase MraW [Cyanothece sp. PCC 8802]
 gi|256592104|gb|ACV02991.1| S-adenosyl-methyltransferase MraW [Cyanothece sp. PCC 8802]
          Length = 304

 Score =  171 bits (434), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 119/306 (38%), Positives = 172/306 (56%), Gaps = 31/306 (10%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           H+ VL +++IA LN  PG   LDAT G+GG+SR       +V   A+DRD  A++     
Sbjct: 22  HISVLSQEMIAGLNIIPGGHYLDATVGSGGHSRLILATFPDVRITAIDRDSQAIAAAASN 81

Query: 78  MRDY-KEQFSLFQATFSQLQDYVPDKGVD--GVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           + +   ++   +Q  F+   DY P K  +  G++ DLGVSS Q D  +RGFSF+  G LD
Sbjct: 82  LAELGSDRLKFWQGNFA---DY-PGKIAEFSGIIADLGVSSPQFDFPERGFSFRHEGALD 137

Query: 135 MRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM     ++A +++NQ +   L  +    GEE+++  +A  IV++R   PF+TT  L+ 
Sbjct: 138 MRMDQTQSLTAGEIINQWSETALADLFYQYGEERRSRSMAKHIVQQR---PFKTTTQLAE 194

Query: 194 LIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            I +TV    +  RIHPATR FQALRI VN E+  L + L  A + L+ GG + ++SFHS
Sbjct: 195 AIAQTVPPKYRYGRIHPATRVFQALRIAVNEELSSLERFLDRAPQWLQPGGRIGIISFHS 254

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK  F  R    + V               +TKK ++P +E+   N RSRSAKLR
Sbjct: 255 LEDRIVKYRF--RDSCWLTV---------------MTKKPIIPQREEQLKNPRSRSAKLR 297

Query: 313 AGMRTV 318
              R +
Sbjct: 298 LAERNL 303


>gi|262282191|ref|ZP_06059960.1| S-adenosyl-methyltransferase MraW [Streptococcus sp. 2_1_36FAA]
 gi|262262645|gb|EEY81342.1| S-adenosyl-methyltransferase MraW [Streptococcus sp. 2_1_36FAA]
          Length = 316

 Score =  171 bits (434), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 112/310 (36%), Positives = 171/310 (55%), Gaps = 14/310 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           HV VLL + I  L+  P  V +DAT G  G+S       S   ++ A D+D  A+   ++
Sbjct: 7   HVTVLLHETIDYLDVKPDGVYVDATLGGAGHSEYLLSKLSPKGHLYAFDQDATAIEHAKK 66

Query: 77  TMRDYKEQ--FSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y E+   +  Q  F  L+  +   GVD   G+ +DLGVSS Q+D  +RGFS+++  
Sbjct: 67  RLAPYIEKGMVTFVQDNFRHLKLQLKKLGVDEIDGICYDLGVSSPQLDERERGFSYKQDA 126

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+  +  SA  VVN  +  DL RI    GE+K + +IA  I + RQ  P +TT +
Sbjct: 127 PLDMRMNRHADFSAYQVVNDYDYHDLVRIFFKYGEDKFSKQIARKIEQARQIKPIETTTE 186

Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L+ +I K+   +K    + HPA + FQA+RI VN+E+    + ++ A   L   G + V+
Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDMLAVDGRISVI 245

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F   S   V      IP +  P + + I++K ++P+ E++  N R+ 
Sbjct: 246 TFHSLEDRLTKQLFKEASTVDVPKGLPFIPDDLKPKL-ELISRKPILPSAEELELNNRAH 304

Query: 308 SAKLRAGMRT 317
           SAKLR   + 
Sbjct: 305 SAKLRVAKKV 314


>gi|153809802|ref|ZP_01962470.1| hypothetical protein RUMOBE_00183 [Ruminococcus obeum ATCC 29174]
 gi|149833980|gb|EDM89060.1| hypothetical protein RUMOBE_00183 [Ruminococcus obeum ATCC 29174]
          Length = 313

 Score =  171 bits (434), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 103/302 (34%), Positives = 167/302 (55%), Gaps = 9/302 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H  VLLE+ I  L   P    +D T G  G+++  C+  S     I +D+D  A+    E
Sbjct: 5   HKSVLLEETIDGLRVKPDGTYVDGTLGGAGHAQEVCRRLSAKGRFIGIDQDQDAIVAASE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  Y ++  + ++ +  + + + + G   VDG+V DLGVSS Q+D  +RGF+++   PL
Sbjct: 65  RLSAYGDRVQIIRSNYCYMANELKNLGIQKVDGIVLDLGVSSYQLDNEERGFTYRVDAPL 124

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM      +A+D+VN  + ++L RI+   GE+K A  IA  IV  R  AP QTT +L+
Sbjct: 125 DMRMDQRQSRTAADIVNGYDERELYRIIRDYGEDKFAKNIAKHIVAARAKAPIQTTGELT 184

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I++++    +    HPA R+FQA+RI +N E++ L + L      L  GG + +++FH
Sbjct: 185 EIIRQSIPMKIQATGGHPAKRTFQAIRIELNRELDVLRESLDGMIDLLDDGGRICIITFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK  F              +      +  + IT+K ++P++ ++  N RS+SAK
Sbjct: 245 SLEDRIVKTIFRKNENPCTCPPDFPVCVCGKKSKGKVITRKPILPSETEMEENPRSKSAK 304

Query: 311 LR 312
           LR
Sbjct: 305 LR 306


>gi|225574511|ref|ZP_03783121.1| hypothetical protein RUMHYD_02588 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038298|gb|EEG48544.1| hypothetical protein RUMHYD_02588 [Blautia hydrogenotrophica DSM
           10507]
          Length = 336

 Score =  171 bits (434), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 106/312 (33%), Positives = 170/312 (54%), Gaps = 19/312 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H  VLLE+ I  L   P  + +D T G  G++   CK  S     I +D+D  A+    E
Sbjct: 27  HKSVLLEETIDGLRVKPDGIYVDGTLGGAGHAVEVCKKLSAKGRFIGIDQDQDAIIAANE 86

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +RD+ ++ ++ ++ +      + ++G   VDG++ DLGVSS Q+D  +RGF+++   PL
Sbjct: 87  RLRDFGDRITIIRSNYCYAVKELRERGIQQVDGILLDLGVSSYQLDNPERGFTYRVDAPL 146

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM   +  +A D+VN    ++L RI+   GE+K A  IA  IV  R   P +TT +L+
Sbjct: 147 DMRMDQRASQTAGDIVNGYEERELYRIIRDYGEDKFAKNIAKHIVMERARKPIETTGELT 206

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I++ +    +    HPA R+FQA+RI +N+E++ L   L      L   G + +++FH
Sbjct: 207 EVIRRAIPMKMQAAGGHPAKRTFQAIRIELNHELDVLRDSLDEMVDILSDRGRICIITFH 266

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF------QSITKKVVVPTQEDVAFNRR 305
           SLEDR+VK  F              PSN    V       + IT+K ++P+++++  N R
Sbjct: 267 SLEDRIVKTIFRKNENPCTC-----PSNFPVCVCGKKSKGKVITRKPILPSEDEMEENPR 321

Query: 306 SRSAKLRAGMRT 317
           ++SAKLR   RT
Sbjct: 322 AKSAKLRIFERT 333


>gi|183602416|ref|ZP_02963782.1| S-adenosyl-methyltransferase [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219683269|ref|YP_002469652.1| S-adenosyl-methyltransferase MraW [Bifidobacterium animalis subsp.
           lactis AD011]
 gi|241191230|ref|YP_002968624.1| S-adenosyl-methyltransferase MraW [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|241196636|ref|YP_002970191.1| S-adenosyl-methyltransferase MraW [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|263445932|sp|C6A8W4|RSMH_BIFLB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263445940|sp|C6AJH2|RSMH_BIFAS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263447580|sp|B8DSU7|RSMH_BIFA0 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|183218335|gb|EDT88980.1| S-adenosyl-methyltransferase [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219620919|gb|ACL29076.1| S-adenosyl-methyltransferase MraW [Bifidobacterium animalis subsp.
           lactis AD011]
 gi|240249622|gb|ACS46562.1| S-adenosyl-methyltransferase [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|240251190|gb|ACS48129.1| S-adenosyl-methyltransferase [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|289177346|gb|ADC84592.1| MraW [Bifidobacterium animalis subsp. lactis BB-12]
 gi|295794223|gb|ADG33758.1| S-adenosyl-methyltransferase [Bifidobacterium animalis subsp.
           lactis V9]
          Length = 353

 Score =  171 bits (434), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 116/309 (37%), Positives = 172/309 (55%), Gaps = 19/309 (6%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCG 74
           H PVLL++ + L+ PA      V +D T G  G++ +F K   N  VI +DRD  A+   
Sbjct: 8   HKPVLLQECVDLVTPALHASDSVAVDCTLGLAGHTIAFLKAAPNATVIGIDRDEEALD-- 65

Query: 75  QETMRDYKE----QFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSF 127
           + T R  +E    +F    A F Q  + +  +GV     V  DLG+SS+QID  +RGFS+
Sbjct: 66  KATARIAQEGLSARFVPVHAAFDQFDEVLRAQGVSRVQAVFMDLGLSSLQIDERERGFSY 125

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
               PLDMRM  S  ++A +++   +   L  I    GEE+ +  IA  IV++RQS+P +
Sbjct: 126 AHDAPLDMRMDTSQALTAREILATYDADRLAHIFKEYGEERFSKPIAKRIVQQRQSSPLE 185

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T+  L++L+   +  ++    +PA R FQALRI VN E+++L + L      L  GG L+
Sbjct: 186 TSSQLTALVDAVIPAARRGSGNPAKRVFQALRIEVNGELDKLRRTLPQIGLHLAVGGRLV 245

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           V S+HSLEDR VK F A +  +V A   M  IP +  P  F+++TK  V     ++A+N 
Sbjct: 246 VESYHSLEDRTVKNFMA-QGLRVDAPADMPVIPPDMQP-FFKALTKGAVKADAGEIAYNP 303

Query: 305 RSRSAKLRA 313
           RS S +LRA
Sbjct: 304 RSASVRLRA 312


>gi|50842237|ref|YP_055464.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           KPA171202]
 gi|54036174|sp|Q6A9R0|RSMH_PROAC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|50839839|gb|AAT82506.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           KPA171202]
 gi|315107070|gb|EFT79046.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL030PA1]
          Length = 337

 Score =  171 bits (434), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 111/305 (36%), Positives = 167/305 (54%), Gaps = 13/305 (4%)

Query: 20  HVPVLLEKVIALLN---PAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCG 74
           H+PV+  +++ LL     +  +V +D T G GG++ +  +   +V  + +DRD  A++  
Sbjct: 14  HIPVMRARILDLLAVVLKSGRRVHVDGTLGMGGHAEAVLRRFPDVELVGIDRDQQALTMA 73

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +  +  + ++  L  A   +L + + D G   VD V+ DLG+SS QID  +RGFS+    
Sbjct: 74  EARLEPFADRVHLVHAVHDELPEVLDDLGLDYVDSVLLDLGLSSFQIDEVERGFSYSVDS 133

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM   SG +A+ ++N+++   L R+L   GEEK A RI  AIV  R   P +T+  
Sbjct: 134 PLDMRMDQSSGRTAAQILNESDPGALVRMLREYGEEKFADRIVRAIVTERDRQPIETSGR 193

Query: 191 LSSLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L  +I + +     +    HPA R+FQALRI VN E+E L   L  A   L  GG + V+
Sbjct: 194 LVEIITEAIPATVRRKRHSHPAKRTFQALRIAVNREMETLPAVLPRALDRLDVGGRIAVL 253

Query: 249 SFHSLEDRLVKKFFASRSGKVM-AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           S+HSLEDR VK+ F         A   M+P +   A F  +T+    P  ++VA N RS 
Sbjct: 254 SYHSLEDRPVKEAFRDACADTAPAGLPMVPESMA-AKFNPVTRGAERPDADEVATNPRSA 312

Query: 308 SAKLR 312
           SA+LR
Sbjct: 313 SARLR 317


>gi|262831458|sp|Q1J5F8|RSMH_STRPF RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 316

 Score =  171 bits (434), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 107/308 (34%), Positives = 172/308 (55%), Gaps = 12/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           HV VLL + + +L+  P  + +DAT G  G+S       S   ++   D+D  A+   Q 
Sbjct: 7   HVTVLLHETVDMLDIKPNGIYVDATLGGSGHSAYLLSKLSEQGHLYCFDQDQKAIDNAQV 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSG 131
           T++ Y  K Q +  +  F  L+  +   GVD   G+++DLGVSS Q+D  +RGFS+++  
Sbjct: 67  TLKSYIDKGQVTFIKDNFRHLKARLTALGVDEIDGILYDLGVSSPQLDERERGFSYKQDA 126

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM   S ++A +VVN     DL +I    GE+K + +IA  I + R   P +TT +
Sbjct: 127 PLDMRMDRQSLLTAYEVVNTYPFNDLVKIFFKYGEDKFSKQIARKIEQARAIKPIETTTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ LI+      +   + HPA + FQA+RI VN+E+    + ++ A + L   G + V++
Sbjct: 187 LAELIKAAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQDAMELLALDGRISVIT 246

Query: 250 FHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDRL K+ F   S   V     +IP +  P  F+ +++K ++P+  ++  N+R+ S
Sbjct: 247 FHSLEDRLTKQLFKEASTVDVPKGLPLIPEDMKP-TFELVSRKPILPSHSELTANKRAHS 305

Query: 309 AKLRAGMR 316
           AKLR   +
Sbjct: 306 AKLRVAKK 313


>gi|2149901|gb|AAC45631.1| unknown [Enterococcus faecalis]
          Length = 319

 Score =  171 bits (434), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 109/316 (34%), Positives = 173/316 (54%), Gaps = 19/316 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  V +D TFG  G+S           ++ A D+D  A++  + 
Sbjct: 8   HYTVLLKETVDGLQVKPDGVYVDCTFGGAGHSEYLLTQLNEHGHLYAFDQDQKALAHAKT 67

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            ++ Y  K Q +  ++ F  +++ + + GV   DG+++DLGVSS Q+D  +RGFS+ +  
Sbjct: 68  RLQKYVDKGQVTFIKSNFRNIKEELAEHGVFHVDGILYDLGVSSPQLDEAERGFSYHQDA 127

Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM     ++A +VVN  +  +L +I    GEEK + +IA  I + R+  P +TT +
Sbjct: 128 PLDMRMDQDAPLTAREVVNTYSYSELVKIFFRYGEEKFSKQIAREIERVREKQPIETTGE 187

Query: 191 LSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I+  +   ++    HPA R FQA+RI VN+E+  + + L  A   L   G + V++
Sbjct: 188 LVEIIKTAIPAPARRKGGHPAKRIFQAIRIAVNDELGAVEESLEQAIDLLAKNGRISVIT 247

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPS-NAHPAVFQS----ITKKVVVPTQEDVAFNR 304
           FHSLEDR+VK  F   S     V+ + P     P  FQ     IT+K ++P+  +++ N 
Sbjct: 248 FHSLEDRIVKTMFKEYS----TVQDLPPGIPVVPEEFQPELKVITRKPILPSDSELSENN 303

Query: 305 RSRSAKLRAGMRTVER 320
           RSRSAKLR   +   R
Sbjct: 304 RSRSAKLRIAEKIKSR 319


>gi|116329171|ref|YP_798891.1| S-adenosylmethionine-dependentmethyltransferase [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|122283047|sp|Q04Y87|RSMH_LEPBL RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|116121915|gb|ABJ79958.1| S-adenosylmethionine-dependentmethyltransferase [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
          Length = 316

 Score =  171 bits (434), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 109/289 (37%), Positives = 162/289 (56%), Gaps = 25/289 (8%)

Query: 39  VILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ 96
           + LD T G GG+S  F K    S VI  DRDP  +S     + D+KE+    Q  FS++ 
Sbjct: 28  LFLDGTAGEGGHSLLFLKGFPNSKVILCDRDPVMLSRALARLVDFKERVVSIQTNFSEID 87

Query: 97  -DYVPDKGVD----GVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQ 150
            + +   G++    G++ DLG+S+  +    RGFSF+++ PLDMR++ + GI+A DV+N 
Sbjct: 88  SNLLSSHGINDSPQGILLDLGISTFHLFHSGRGFSFKEAEPLDMRLTPNIGINAEDVINT 147

Query: 151 ANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV--YFSKNNRIH 208
            +   L  I    GEE+ + +IA  IV+RR+      T +L+ LI K +        R H
Sbjct: 148 YSKDRLMHIFYTYGEERWSKKIAEVIVERRKQNLISYTSELADLISKIIPRKLWPPGR-H 206

Query: 209 PATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGK 268
           PATR FQALRI VN E+  + +GL S    L+  G++ V+SFHSLEDR+VK         
Sbjct: 207 PATRIFQALRIEVNQELTHIEKGLDSLLNLLRPEGVIQVISFHSLEDRIVKN-------- 258

Query: 269 VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
             ++R+    N     F+ +TKK ++P++E+   N  SRSAKLR   +T
Sbjct: 259 --SLRNYAKQNG----FELLTKKPILPSEEETKENPASRSAKLRVLRKT 301


>gi|282850409|ref|ZP_06259788.1| S-adenosyl-methyltransferase MraW [Veillonella parvula ATCC 17745]
 gi|282579902|gb|EFB85306.1| S-adenosyl-methyltransferase MraW [Veillonella parvula ATCC 17745]
          Length = 310

 Score =  171 bits (434), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 106/307 (34%), Positives = 168/307 (54%), Gaps = 10/307 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
           +H  VLL + +  +   P  + +D T G  G++ +  +M      +I LD+D  A+S  +
Sbjct: 4   NHTSVLLRETVDSVVTNPKGIYVDCTLGGAGHAHAVGEMLDPEGMIIGLDQDEDALSVAR 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + + D K Q       FS L++ + + G   VDG +FDLGVSS Q+D  +RGFS+   GP
Sbjct: 64  QRLSDLKCQVLTIPTNFSNLKEALQNAGIYEVDGFIFDLGVSSYQLDTPERGFSYMNDGP 123

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM     ++A ++VN+ + + L +I+   GEE+ A RI   IV+ RQ     TT +L
Sbjct: 124 LDMRMDKDAPLTAEEIVNEYDSEQLLQIIRDYGEERWAKRIVEFIVEARQEKRITTTGEL 183

Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+  +   ++ +  HPA R+FQA+RI VN E+  L      A   LK  G + V++F
Sbjct: 184 VRIIKNAIPAKARQDGPHPAKRTFQAIRIEVNRELAILHDSFVDAVSMLKPKGKIGVITF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+ K+ F   S   +    + +    H AV ++   K + P+  ++  N R+RSA
Sbjct: 244 HSLEDRITKQTFKELSTACICPPQLPVCVCNHKAVVKA-KNKAIEPSIGEIEVNPRARSA 302

Query: 310 KLRAGMR 316
           KLR  ++
Sbjct: 303 KLRVAVK 309


>gi|294793912|ref|ZP_06759049.1| S-adenosyl-methyltransferase MraW [Veillonella sp. 3_1_44]
 gi|294455482|gb|EFG23854.1| S-adenosyl-methyltransferase MraW [Veillonella sp. 3_1_44]
          Length = 311

 Score =  171 bits (434), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 106/307 (34%), Positives = 168/307 (54%), Gaps = 10/307 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
           +H  VLL + +  +   P  + +D T G  G++ +  +M      +I LD+D  A+S  +
Sbjct: 5   NHTSVLLRETVDSVVTNPKGIYVDCTLGGAGHAHAVGEMLDPEGMIIGLDQDEDALSVAR 64

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + + D K Q       FS L++ + + G   VDG +FDLGVSS Q+D  +RGFS+   GP
Sbjct: 65  QRLSDLKCQVLTIPTNFSNLKEALQNAGIYEVDGFIFDLGVSSYQLDTPERGFSYMNDGP 124

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM     ++A ++VN+ + + L +I+   GEE+ A RI   IV+ RQ     TT +L
Sbjct: 125 LDMRMDKDAPLTAEEIVNEYDSEQLLQIIRDYGEERWAKRIVEFIVEARQEKRITTTGEL 184

Query: 192 SSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+  +   ++ +  HPA R+FQA+RI VN E+  L      A   LK  G + V++F
Sbjct: 185 VRIIKNAIPAKARQDGPHPAKRTFQAIRIEVNRELAILHDSFVDAVSMLKPKGKIGVITF 244

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+ K+ F   S   +    + +    H AV ++   K + P+  ++  N R+RSA
Sbjct: 245 HSLEDRITKQTFKELSTACICPPQLPVCVCNHKAVVKA-KNKAIEPSIGEIEVNPRARSA 303

Query: 310 KLRAGMR 316
           KLR  ++
Sbjct: 304 KLRVAVK 310


>gi|157151600|ref|YP_001449889.1| S-adenosyl-methyltransferase MraW [Streptococcus gordonii str.
           Challis substr. CH1]
 gi|262826721|sp|A8AVS9|RSMH_STRGC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|157076394|gb|ABV11077.1| S-adenosyl-methyltransferase MraW [Streptococcus gordonii str.
           Challis substr. CH1]
          Length = 316

 Score =  171 bits (433), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 112/310 (36%), Positives = 171/310 (55%), Gaps = 14/310 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           HV VLL + I  L+  P  V +DAT G  G+S       S   ++ A D+D  A+   ++
Sbjct: 7   HVTVLLHETIDYLDVKPDGVYVDATLGGAGHSEYLLSKLSPKGHLYAFDQDATAIEHAKK 66

Query: 77  TMRDYKEQ--FSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y E+   +  Q  F  L+  +   GVD   G+ +DLGVSS Q+D  +RGFS+++  
Sbjct: 67  RLAPYIEKGMVTFVQDNFRHLKLQLEKLGVDEIDGICYDLGVSSPQLDERERGFSYKQDA 126

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+  +  SA  VVN  +  DL RI    GE+K + +IA  I + RQ  P +TT +
Sbjct: 127 PLDMRMNRHADFSAYQVVNDYDYHDLVRIFFKYGEDKFSKQIARKIEQARQIKPIETTTE 186

Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L+ +I K+   +K    + HPA + FQA+RI VN+E+    + ++ A   L   G + V+
Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDLLAVDGRISVI 245

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F   S   V      IP +  P + + I++K ++P+ E++  N R+ 
Sbjct: 246 TFHSLEDRLTKQLFKEASTVDVPKGLPFIPDDLKPKL-ELISRKPILPSAEELELNNRAH 304

Query: 308 SAKLRAGMRT 317
           SAKLR   + 
Sbjct: 305 SAKLRVAKKV 314


>gi|116330221|ref|YP_799939.1| S-adenosylmethionine-dependentmethyltransferase [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
 gi|122282016|sp|Q04V89|RSMH_LEPBJ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|116123910|gb|ABJ75181.1| S-adenosylmethionine-dependentmethyltransferase [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
          Length = 316

 Score =  171 bits (433), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 109/289 (37%), Positives = 162/289 (56%), Gaps = 25/289 (8%)

Query: 39  VILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ 96
           + LD T G GG+S  F K    S VI  DRDP  +S     + D+KE+    Q  FS++ 
Sbjct: 28  LFLDGTAGEGGHSLLFLKGFPNSKVILCDRDPVMLSRALARLVDFKERVVSIQTNFSEID 87

Query: 97  -DYVPDKGVD----GVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQ 150
            + +   G++    G++ DLG+S+  +    RGFSF+++ PLDMR++ + GI+A DV+N 
Sbjct: 88  SNLLSSHGINDSPQGILLDLGISTFHLFHSGRGFSFKEAEPLDMRLTPNIGINAEDVINT 147

Query: 151 ANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV--YFSKNNRIH 208
            +   L  I    GEE+ + +IA  IV+RR+      T +L+ LI K +        R H
Sbjct: 148 YSKDRLMHIFYTYGEERWSKKIAEVIVERRKQNLISYTSELADLISKIIPRKLWPPGR-H 206

Query: 209 PATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGK 268
           PATR FQALRI VN E+  + +GL S    L+  G++ V+SFHSLEDR+VK         
Sbjct: 207 PATRIFQALRIEVNQELTHIEKGLDSLLNLLRPEGVIQVISFHSLEDRIVKN-------- 258

Query: 269 VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
             ++R+    N     F+ +TKK ++P++E+   N  SRSAKLR   +T
Sbjct: 259 --SLRNYAKQNG----FELLTKKPILPSEEETKENPASRSAKLRVLRKT 301


>gi|312131313|ref|YP_003998653.1| s-adenosyl-methyltransferase mraw [Leadbetterella byssophila DSM
           17132]
 gi|311907859|gb|ADQ18300.1| S-adenosyl-methyltransferase MraW [Leadbetterella byssophila DSM
           17132]
          Length = 301

 Score =  171 bits (433), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 112/301 (37%), Positives = 166/301 (55%), Gaps = 19/301 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77
           H PV+L + +  LN  P  + +D TFG GG+SR   K     ++   D+D       ++ 
Sbjct: 6   HKPVMLTECLQGLNIRPDGIYVDVTFGGGGHSREILKHLTTGHLYGFDQD---ADAQEQA 62

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
            +     F+  +A F  ++ Y+   GV   DG++ DLG+SS QID  +RGFS +  G LD
Sbjct: 63  SKISSPNFTFIRANFRNIRKYLKIYGVSKVDGILADLGISSHQIDTPERGFSTRFDGELD 122

Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM+ S GISA +VVN+    +L +I G+ GE K A  +A AI   + +    T QDL  
Sbjct: 123 MRMNTSTGISAKEVVNEYAEDELHKIFGMYGELKNARSVARAIALEKGN--IHTVQDLKD 180

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
            ++      K N+ +   + FQALRI VN E++ L + L    + L  GG L+V+S+HSL
Sbjct: 181 TLKHLAPRGKENKFY--AQVFQALRIEVNEELKVLEEFLLQVPEVLAPGGRLVVMSYHSL 238

Query: 254 EDRLVKKFFASRSGKVMA--VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           EDR VK F   RSGK      + +  +   P   Q++T+K V  ++ ++A N R+RSAKL
Sbjct: 239 EDRPVKNFI--RSGKFYGEVEKDLFGNEIKP--LQAVTRKAVEASEAEIAENPRARSAKL 294

Query: 312 R 312
           R
Sbjct: 295 R 295


>gi|237724902|ref|ZP_04555383.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. D4]
 gi|265754710|ref|ZP_06089762.1| methylase MraW [Bacteroides sp. 3_1_33FAA]
 gi|229436640|gb|EEO46717.1| S-adenosyl-methyltransferase MraW [Bacteroides dorei 5_1_36/D4]
 gi|263234824|gb|EEZ20392.1| methylase MraW [Bacteroides sp. 3_1_33FAA]
          Length = 304

 Score =  171 bits (433), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 112/300 (37%), Positives = 167/300 (55%), Gaps = 16/300 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76
           HVPVLL + +  +N  PG + +DATFG GG+S+   S     +++ + D+D       + 
Sbjct: 9   HVPVLLNESVDGMNIQPGGIYVDATFGGGGHSKEILSRLDSTAHLYSFDQDE---DAEKN 65

Query: 77  TMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + D   +F+  ++ F  L +   Y   + VD ++ DLGVSS   D  +RGFSF+  G L
Sbjct: 66  IVSD--SRFTFVRSNFRYLSNFLRYYDVEEVDAILADLGVSSHHFDDSERGFSFRFEGKL 123

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  +GI+A+DVVN  + + L  I  + GE K + ++A  IVK R      T  D  
Sbjct: 124 DMRMNKRAGITAADVVNTYDEERLANIFYLYGELKNSRKLASTIVKARGVKQIVTIGDFL 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I+    F +        + FQALRI VN E+E L + L +A KALK GG L+V+++HS
Sbjct: 184 EVIKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLYAATKALKPGGRLVVITYHS 241

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK    + + +  A +    +   P  F+ +  KV+V   E+V  N RSRSAKLR
Sbjct: 242 LEDRMVKNIMKTGNIEGKAEQDFFGNVQTP--FKLVNSKVIVAGNEEVTCNPRSRSAKLR 299


>gi|262373648|ref|ZP_06066926.1| MraW methylase [Acinetobacter junii SH205]
 gi|262311401|gb|EEY92487.1| MraW methylase [Acinetobacter junii SH205]
          Length = 306

 Score =  171 bits (433), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 117/307 (38%), Positives = 170/307 (55%), Gaps = 18/307 (5%)

Query: 20  HVPVLL-EKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQ 75
           H+ VLL E V  +L      + +DATFG GG+++   S     + V A D+DP A+    
Sbjct: 3   HISVLLHETVDGVLAGRDTGIYVDATFGRGGHTKLLLSKLDQNARVYAFDKDPQALEVAA 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + +     +F +  A+F+ LQ  + + G   VDGV+ DLGVSS Q+D  +RGFSF ++GP
Sbjct: 63  Q-LEQEDPRFKIIHASFADLQSELANIGITEVDGVMADLGVSSPQLDQAERGFSFMQNGP 121

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G +A++ + +   + L  I+   GEE+ + RIA AI   +Q+    TT  L
Sbjct: 122 LDMRMDNSKGPTAAEWLLEIEEEKLANIIYQYGEERYSRRIAKAI---KQAGELTTTAQL 178

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + L+ KT +       HPATR+FQA+RI +N E+E++   L  A + LK  G L V+SFH
Sbjct: 179 AELV-KTAHPKWEKHKHPATRTFQAIRIAINRELEDIEIFLPQAVELLKPKGQLAVISFH 237

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV--VVPTQEDVAFNRRSRSA 309
           SLEDRL+K+F    S         +P      +     KKV  +  ++ +V  N RSRSA
Sbjct: 238 SLEDRLIKQFIQKESTLAEDTGWGMP---QAQIDTRRLKKVSRIRASEAEVKANPRSRSA 294

Query: 310 KLRAGMR 316
            LR   R
Sbjct: 295 WLRVAER 301


>gi|314968074|gb|EFT12173.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL037PA1]
          Length = 337

 Score =  171 bits (433), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 111/305 (36%), Positives = 167/305 (54%), Gaps = 13/305 (4%)

Query: 20  HVPVLLEKVIALLN---PAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCG 74
           H+PV+  +++ LL     +  +V +D T G GG++ +  +   +V  + +DRD  A++  
Sbjct: 14  HIPVMRARILDLLAVVLKSGRRVHVDGTLGMGGHAEAVLRRFPDVELVGIDRDQQALTMA 73

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +  +  + ++  L  A   +L + + D G   VD V+ DLG+SS QID  +RGFS+    
Sbjct: 74  EARLEPFADRVHLVHAVHDELLEVLDDLGLDYVDSVLLDLGLSSFQIDEVERGFSYSVDS 133

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM   SG +A+ ++N+++   L R+L   GEEK A RI  AIV  R   P +T+  
Sbjct: 134 PLDMRMDQSSGRTAAQILNESDPGALVRMLREYGEEKFADRIVRAIVTERDRQPIETSGR 193

Query: 191 LSSLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L  +I + +     +    HPA R+FQALRI VN E+E L   L  A   L  GG + V+
Sbjct: 194 LVEIITEAIPATVRRKRHSHPAKRTFQALRIAVNREMETLPAVLPRALDRLDVGGRIAVL 253

Query: 249 SFHSLEDRLVKKFFASRSGKVM-AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           S+HSLEDR VK+ F         A   M+P +   A F  +T+    P  ++VA N RS 
Sbjct: 254 SYHSLEDRPVKEAFRDACADTAPAGLPMVPESM-AAKFNPVTRGAERPDADEVATNPRSA 312

Query: 308 SAKLR 312
           SA+LR
Sbjct: 313 SARLR 317


>gi|294792047|ref|ZP_06757195.1| S-adenosyl-methyltransferase MraW [Veillonella sp. 6_1_27]
 gi|294457277|gb|EFG25639.1| S-adenosyl-methyltransferase MraW [Veillonella sp. 6_1_27]
          Length = 311

 Score =  171 bits (433), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 106/307 (34%), Positives = 168/307 (54%), Gaps = 10/307 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
           +H  VLL + +  +   P  + +D T G  G++ +  ++      +I LD+D  A+S  +
Sbjct: 5   NHTSVLLRETVDSVVTNPKGIYVDCTLGGAGHAHAVGEILDPEGMIIGLDQDEDALSVAR 64

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + + D K Q       FS L+D + + G   VDG +FDLGVSS Q+D  +RGFS+   GP
Sbjct: 65  QRLSDLKCQVLTIPTNFSNLKDALQNAGIYEVDGFIFDLGVSSYQLDTPERGFSYMNDGP 124

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM     ++A ++VN+ + + L +I+   GEE+ A RI   IV+ RQ     TT +L
Sbjct: 125 LDMRMDKDAPLTAEEIVNEYDSEQLLQIIRDYGEERWAKRIVEFIVEARQEKRITTTGEL 184

Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+  +   ++ +  HPA R+FQA+RI VN E+  L      A   LK  G + V++F
Sbjct: 185 VRIIKNAIPAKARQDGPHPAKRTFQAIRIEVNRELAILHDSFVDAVSMLKPKGKIGVITF 244

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+ K+ F   S   +    + +    H AV ++   K + P+  ++  N R+RSA
Sbjct: 245 HSLEDRITKQTFKELSTACICPPQLPVCVCNHKAVVKA-KNKAIEPSIGEIEVNPRARSA 303

Query: 310 KLRAGMR 316
           KLR  ++
Sbjct: 304 KLRVAVK 310


>gi|293192321|ref|ZP_06609432.1| S-adenosyl-methyltransferase MraW [Actinomyces odontolyticus F0309]
 gi|292820236|gb|EFF79230.1| S-adenosyl-methyltransferase MraW [Actinomyces odontolyticus F0309]
          Length = 335

 Score =  171 bits (433), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 117/309 (37%), Positives = 173/309 (55%), Gaps = 18/309 (5%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74
           HVPVLL + + +L PA   PG V++D T G GG++    +   G  VI +DRDP A+   
Sbjct: 19  HVPVLLRECLDMLAPAIKRPGAVLVDGTLGMGGHTEGALERFEGLTVIGIDRDPQAIELA 78

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRGFSFQK 129
              +  +  +F     T+  +   V ++      VDGV+ DLGVSS+Q+D  DRGF++ K
Sbjct: 79  SARLERFGTRFRAVHTTYDNIDVAVEEQLGTGARVDGVLMDLGVSSLQLDEADRGFAYSK 138

Query: 130 SGPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM + SG SA+D++  ++  +L RIL   GEEK A RIA  I++RR  AP   T
Sbjct: 139 DAPLDMRMDATSGQSAADLLATSSEGELIRILRTYGEEKFAPRIARLIIRRRDDAPITRT 198

Query: 189 QDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L  +I++ +   ++    +PA R+FQALR+ VN+E+  L + L  A  +L+ GG L+V
Sbjct: 199 GELVDIIREAIPAPARRTGGNPAKRTFQALRVAVNDELTILERALPRALSSLRVGGRLVV 258

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVR---HMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
            S+ SLEDR+VK     R G   A      ++P    P+  + +TK      Q +   N 
Sbjct: 259 ESYQSLEDRIVKDVL--RCGSTSAAPPGLPVVPDEMAPS-LRLLTKGANKADQAEQDHNP 315

Query: 305 RSRSAKLRA 313
           RS S +LR 
Sbjct: 316 RSASVRLRG 324


>gi|194337867|ref|YP_002019661.1| S-adenosyl-methyltransferase MraW [Pelodictyon phaeoclathratiforme
           BU-1]
 gi|262824772|sp|B4SHF1|RSMH_PELPB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|194310344|gb|ACF45044.1| S-adenosyl-methyltransferase MraW [Pelodictyon phaeoclathratiforme
           BU-1]
          Length = 332

 Score =  171 bits (433), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 110/316 (34%), Positives = 175/316 (55%), Gaps = 29/316 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--------GSNVIALDRDPFAV 71
           H PVL+ +V+A L   PG + +D T G GG+S +  +         GS +I +D+D  A+
Sbjct: 9   HEPVLVNEVVAFLVRKPG-IYVDGTLGGGGHSSAMLRALFDAGFLAGSLLIGIDQDDAAL 67

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVP----DKGVD----GVVFDLGVSSMQIDCGDR 123
               ET++++     L +  F  +   +     +KG++    G++ DLGVSS QI+  DR
Sbjct: 68  RVAGETLKEFAASTVLVKGNFCDMGGLIASICAEKGLEPKVMGILLDLGVSSFQINTPDR 127

Query: 124 GFSFQKSGPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GFS+ + GPLDMRM S +  SA+D+VN  + ++L R+    GEE ++  IA AIV  RQ 
Sbjct: 128 GFSYLREGPLDMRMDSNASRSAADIVNGYDEQELARLFYRYGEEPRSRSIARAIVAYRQK 187

Query: 183 -APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
                 TQ+L+++I+   +      I   +R FQALRI VN E++ L Q L      L  
Sbjct: 188 HGAVTYTQELAAIIRGNAH-GGEKVIKTLSRVFQALRIEVNAELDVLRQALYDGIDCLDE 246

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRS-----GKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296
            G + ++S+HSLEDR+VK+ FA ++      K + +R  +   +       +T+K ++  
Sbjct: 247 TGRMAIISYHSLEDRIVKRVFAEKARSDWGPKGVGLREPLSWGS----VAPVTRKPLIAA 302

Query: 297 QEDVAFNRRSRSAKLR 312
            +++A N R+RSAKLR
Sbjct: 303 PDEIALNSRARSAKLR 318


>gi|228474969|ref|ZP_04059697.1| S-adenosyl-methyltransferase MraW [Staphylococcus hominis SK119]
 gi|314936659|ref|ZP_07844006.1| S-adenosyl-methyltransferase MraW [Staphylococcus hominis subsp.
           hominis C80]
 gi|228270954|gb|EEK12342.1| S-adenosyl-methyltransferase MraW [Staphylococcus hominis SK119]
 gi|313655278|gb|EFS19023.1| S-adenosyl-methyltransferase MraW [Staphylococcus hominis subsp.
           hominis C80]
          Length = 311

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 103/304 (33%), Positives = 164/304 (53%), Gaps = 9/304 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           HV V+L++ I  L+     + +D T G  G++       ++   +IA+D+D  A+   +E
Sbjct: 4   HVSVMLKETIDELDIKEDGIYVDCTLGGAGHALYLLNQLNDDGRLIAIDQDTTALENAKE 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +RD+  + +     F +L D + + G   VDG+ +DLGVSS Q+D  +RGFS+     L
Sbjct: 64  VLRDHLHKVTFVHNNFRELTDILKNLGIEKVDGIYYDLGVSSPQLDIPERGFSYHHDAKL 123

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     ++A DVVN    + L +I    GEEK + +IA  I   R+  P +TT +L 
Sbjct: 124 DMRMDQTQELTAYDVVNDWPYEALVKIFYRYGEEKFSKQIARRIEAHREQQPIETTLELV 183

Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I++ +   ++    HPA R FQA+RI VN+E+      +  A + +K  G + V++FH
Sbjct: 184 DIIKEGIPAKARRKGGHPAKRIFQAIRIAVNDELSAFEDSIEQAIEHVKVKGRISVITFH 243

Query: 252 SLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDRL K+ F          R + I   A+    + + +K +  T+ED+  N R+RSAK
Sbjct: 244 SLEDRLCKQIFQEYEKGPDVPRGLPIIPEAYTPKLKRVNRKPITATEEDLDENNRARSAK 303

Query: 311 LRAG 314
           LR  
Sbjct: 304 LRVA 307


>gi|148244441|ref|YP_001219135.1| S-adenosyl-methyltransferase [Candidatus Vesicomyosocius okutanii
           HA]
 gi|263504496|sp|A5CX97|RSMH_VESOH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|146326268|dbj|BAF61411.1| S-adenosyl-methyltransferase [Candidatus Vesicomyosocius okutanii
           HA]
          Length = 307

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 101/312 (32%), Positives = 172/312 (55%), Gaps = 24/312 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H  V+  + +  LN     + +DATFG GG+++      S    +IA D+D  A+    +
Sbjct: 6   HQSVMFNESMYALNIKTDGIYIDATFGRGGHAQGILNRLSKKGRLIAFDQDINAIEYANK 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            + D   + +L  + FS++   +  +G    +DG++ DLGVSS Q++   RGFSF+  GP
Sbjct: 66  NLVD--NRLTLIHSAFSKMLSIITKQGLIGRIDGILIDLGVSSPQLENAQRGFSFRVDGP 123

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+  +G+SA+  +  AN +++  ++     EK++  IA+ I K +++   +TT +L
Sbjct: 124 LDMRMNQTTGMSATQWLKSANEEEIANVIYQFSNEKKSRHIANKIKKYQKNHVLETTLEL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           ++++ K V   KN   HPATR+FQA+RIF+N E+++L   L  ++  L   G L ++SFH
Sbjct: 184 ANIVSKVVKKQKNK--HPATRTFQAIRIFINQELKQLISVLEQSKDILSKNGRLSIISFH 241

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV------VPTQEDVAFNRR 305
           S+EDR+VK+F    S      R        P +   I K  +      + ++ ++  N+R
Sbjct: 242 SIEDRIVKRFIQKNS------RQKTLPKGLPIIENEIEKTYLKDLGKYLTSKAEIDNNKR 295

Query: 306 SRSAKLRAGMRT 317
           +RSA LR   + 
Sbjct: 296 ARSAILRVASKN 307


>gi|294791087|ref|ZP_06756245.1| S-adenosyl-methyltransferase MraW [Scardovia inopinata F0304]
 gi|294458984|gb|EFG27337.1| S-adenosyl-methyltransferase MraW [Scardovia inopinata F0304]
          Length = 342

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 112/311 (36%), Positives = 170/311 (54%), Gaps = 18/311 (5%)

Query: 20  HVPVLLEKVIAL----LNPAPGK---VILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70
           H PVLL++   L    L+ A      VI+D T G  G++ +F    S   +I +DRD  A
Sbjct: 9   HTPVLLDECCQLVCGGLDQAAADRTPVIVDCTLGLAGHASAFLARASRARLIGIDRDREA 68

Query: 71  VSCGQETMRD--YKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGF 125
           +    + M++  + ++F    A F      + ++G   VD V  DLG+SS+QID  DRGF
Sbjct: 69  LDLATDRMKNLGFADRFIPLHAAFDDFSSLMENQGLDTVDAVFMDLGLSSLQIDESDRGF 128

Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA- 183
           S+    PLDMRM     ++A D++ +++ ++LTRI    G+E+ + +IA A+V++R    
Sbjct: 129 SYSHDAPLDMRMDTDQTVTAQDILRESSKEELTRIFRHYGQERYSRQIASALVRQRDKGH 188

Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
           P +TT  L  L+ + V  S  +  +PA R FQALRI VN E+++LA  L      L  GG
Sbjct: 189 PVETTGQLVQLVDRVVPKSHRSGGNPAKRVFQALRIQVNGELDKLAATLPQIALHLSLGG 248

Query: 244 LLIVVSFHSLEDRLVKKFFA-SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
            L+V S+HSLED++VK F A      +     +IP +A P  F  +T   +   Q++   
Sbjct: 249 RLVVESYHSLEDKIVKSFMAQGLQANLPPGLPVIPDDAQP-FFTDLTHGAIKADQDEAEH 307

Query: 303 NRRSRSAKLRA 313
           N RS S +LRA
Sbjct: 308 NSRSTSVRLRA 318


>gi|313665282|ref|YP_004047153.1| S-adenosyl-methyltransferase MraW [Mycoplasma leachii PG50]
 gi|312950000|gb|ADR24596.1| S-adenosyl-methyltransferase MraW [Mycoplasma leachii PG50]
          Length = 309

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 112/307 (36%), Positives = 167/307 (54%), Gaps = 22/307 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSN--VIALDRDPFAVSCGQE 76
           H+PVLL++ I  LN  P  + +D T G  G+ S    ++  N  + A+D+D  A+   +E
Sbjct: 4   HIPVLLDESIKYLNIKPNGIYVDCTLGRAGHASEILQRLSQNGFLYAIDQDKVAIDQAKE 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +      F L Q  FS L   +       VDG+++DLGVSS Q+D G RGFS++  GPL
Sbjct: 64  KLEKISNNFFLIQGNFSNLSALLAINHVFNVDGILYDLGVSSPQLDIGSRGFSYKIDGPL 123

Query: 134 DMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           DMRM  +   ++A  +VNQ     +  IL   GEE  A  IA  IV  R   P  +T  L
Sbjct: 124 DMRMDITNNSLTADIIVNQYPETQIADILFKYGEESFAKNIAKKIVLSR---PINSTLKL 180

Query: 192 -----SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
                S+L QK +   K    HPA ++FQALRIF+NNE+  L   L+ A + L + G + 
Sbjct: 181 VEVIKSALPQKVLKQKK----HPAKKTFQALRIFINNELIVLENSLKQALELLNSKGRIC 236

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMA-VRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNR 304
           V++FHSLE+++VK  F + +      + + +P  A+  + F+ + KK + P+  ++  N 
Sbjct: 237 VITFHSLEEKIVKNIFNNSTNYFQEQLFNNLPIKANLNSQFKLVIKKPIKPSLLELENNY 296

Query: 305 RSRSAKL 311
           RS SAKL
Sbjct: 297 RSHSAKL 303


>gi|294787094|ref|ZP_06752348.1| S-adenosyl-methyltransferase MraW [Parascardovia denticolens F0305]
 gi|315226746|ref|ZP_07868534.1| S-adenosyl-methyltransferase MraW [Parascardovia denticolens DSM
           10105]
 gi|294485927|gb|EFG33561.1| S-adenosyl-methyltransferase MraW [Parascardovia denticolens F0305]
 gi|315120878|gb|EFT84010.1| S-adenosyl-methyltransferase MraW [Parascardovia denticolens DSM
           10105]
          Length = 348

 Score =  171 bits (432), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 117/305 (38%), Positives = 166/305 (54%), Gaps = 12/305 (3%)

Query: 20  HVPVLLEKVIALLNPA-PGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76
           H PVLL+  + L+       +I+D T G  G++ +F +    + +I +DRD  A++   E
Sbjct: 8   HTPVLLDDCVRLITDGRQAPLIVDCTLGLAGHASAFLQADPQARLIGIDRDQEALTLATE 67

Query: 77  TMRDY--KEQFSLFQA---TFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            MRD    ++F+   A   +FSQ+ D    K VD V  DLG+SS+QID  DRGFS+    
Sbjct: 68  RMRDLGLSDRFTPVHAAFDSFSQVLDEQGIKTVDAVFMDLGLSSLQIDENDRGFSYSHDA 127

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF-QTTQ 189
           PLDMRM     ++A DV+     +DL RI    G+E+ A  IA  +VK R+     ++T 
Sbjct: 128 PLDMRMDPGQSLTARDVLLTYGRQDLARIFREYGQERFAGPIASRLVKAREEGETPRSTG 187

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            L +L+ + +  +     +PA R FQALRI VN E+++L   L  A   L  GG L+V S
Sbjct: 188 QLVALVDQVIPRAHRAPGNPAKRVFQALRIEVNGELDKLRMTLPQAACRLNLGGCLVVES 247

Query: 250 FHSLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           +HSLEDR+ K F AS     V A   +IP  A P  F  +T+  V   Q + A N RS S
Sbjct: 248 YHSLEDRITKTFMASGIHADVPAGLPVIPQEAQP-FFADLTRGAVKAGQAEAAHNSRSTS 306

Query: 309 AKLRA 313
            +LRA
Sbjct: 307 VRLRA 311


>gi|57242049|ref|ZP_00369989.1| S-adenosyl-methyltransferase MraW [Campylobacter upsaliensis
           RM3195]
 gi|57017241|gb|EAL54022.1| S-adenosyl-methyltransferase MraW [Campylobacter upsaliensis
           RM3195]
          Length = 304

 Score =  171 bits (432), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 106/299 (35%), Positives = 166/299 (55%), Gaps = 8/299 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           H+PVL ++V  L       + LD T G GG+S +  KM  N+  IA D+D  A+   +E 
Sbjct: 5   HIPVLPKEVNHLFEKLNEGLFLDCTLGYGGHSENLLKMHPNLHLIACDQDEEALQFSKER 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
           +R++  +  L+ + FSQ+ + +  K + G++ D+GVSS+ +D  +RGFS  +S  LDMRM
Sbjct: 65  LREFDARIRLYHSNFSQILEQIDLKNLRGILADIGVSSLHLDKDERGFSL-RSNFLDMRM 123

Query: 138 SCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
             S  +SA DV+N  + + L  I  I GE K  + +A  I+K R      + ++L  ++ 
Sbjct: 124 DKSQSLSAFDVINTYSKEKLANIFKIYGELKDGAFLAEKIIKARAKKQIISAKELCEILS 183

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
            T    KN +I  A  +FQALRI VN E+E L   L+  EKA     +L ++ FHSLEDR
Sbjct: 184 NTRL--KNRKISQAILAFQALRIEVNKELEVLELFLQKLEKAHLRDCILAIICFHSLEDR 241

Query: 257 LVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           +VK +F   +   +     I     A+  + + ++KK + P +E++  N RS  AK+RA
Sbjct: 242 IVKNYFKKWAKACICDERAIRCECGANHNLGEILSKKPITPDKEEIKANPRSSCAKMRA 300


>gi|195978690|ref|YP_002123934.1| S-adenosyl-methyltransferase MraW [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|262826706|sp|B4U4K4|RSMH_STREM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|195975395|gb|ACG62921.1| S-adenosyl-methyltransferase MraW [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 316

 Score =  171 bits (432), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 108/309 (34%), Positives = 173/309 (55%), Gaps = 14/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HV VLL + + +L+  P  + +DAT G  G+S     +     ++   D+D  A+   QE
Sbjct: 7   HVTVLLHEAVDMLDIKPDGIYVDATLGGSGHSAYLLSLLGDKGHLYCFDQDQKAIDHAQE 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            ++ Y  K Q +  +  F  L+  + + GV   DG+++DLGVSS Q+D  +RGFS+++  
Sbjct: 67  QLKPYIDKGQVTFIKDNFRHLKARLLEHGVTEIDGILYDLGVSSPQLDERERGFSYKQDA 126

Query: 132 PLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM S + ++A +VVN  +  DL RI    GE+K + +IA  I + R   P  TT +
Sbjct: 127 PLDMRMDSQAALTAYEVVNTYDFNDLVRIFFKYGEDKFSKQIARKIEQARAIKPISTTTE 186

Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L++LI K+   +K    + HPA + FQA+RI VN+E+      ++ A + L   G + V+
Sbjct: 187 LAALI-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADASIQQAIELLALDGRISVI 245

Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K  F   S          IP    P + + +++K ++P+Q+++  N R+ 
Sbjct: 246 TFHSLEDRLTKHLFKEASTADAPKGLPFIPDELKPKL-ELVSRKPILPSQKELMANNRAH 304

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 305 SAKLRVARK 313


>gi|145350048|ref|XP_001419435.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579666|gb|ABO97728.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 314

 Score =  171 bits (432), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 109/311 (35%), Positives = 166/311 (53%), Gaps = 25/311 (8%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCGQETMRDY 81
           +++V+        +  +D T GAGG++R+  +    +   +  D D  A +  +  +   
Sbjct: 1   MDEVLEAFRDVRARTHVDGTLGAGGHARAMIEAHEEMEHFVGFDVDASAHALARPRLERA 60

Query: 82  KE-----------QFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSF 127
           +            + SL +A F ++++ +      GVD VV DLGVSSM +D  +RGFSF
Sbjct: 61  RAATRGDEATTTLRLSLVEANFRRMREALRALDVDGVDSVVLDLGVSSMHLDRAERGFSF 120

Query: 128 QKSGPLDMRMSCSGIS-ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
              GPLDMRM  S  + A ++VN    +++ RIL   GEEK    +A  I +RR     +
Sbjct: 121 MNDGPLDMRMGESATTTAEEIVNAWPEEEIGRILREYGEEKHWRLLARRICERRAEKEIR 180

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           TT++L   I       K   IHPATR+FQ +RI VN+E+  +   + +A +AL+ GG L 
Sbjct: 181 TTRELVDAIGNVP--GKWGSIHPATRTFQGIRIAVNDELGAVEDVIPAAIEALRPGGRLA 238

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAV-----RHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           ++SFHSLED +VK+ F   +G+         R+M    A P + + IT+K  VPT  ++ 
Sbjct: 239 IISFHSLEDSIVKRRFRHFAGRAEPPSEEVNRYMPQPEAPPKIVKLITRKPKVPTSAEID 298

Query: 302 FNRRSRSAKLR 312
            N RSRSAKLR
Sbjct: 299 VNVRSRSAKLR 309


>gi|281424950|ref|ZP_06255863.1| S-adenosyl-methyltransferase MraW [Prevotella oris F0302]
 gi|281400794|gb|EFB31625.1| S-adenosyl-methyltransferase MraW [Prevotella oris F0302]
          Length = 315

 Score =  171 bits (432), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 114/306 (37%), Positives = 168/306 (54%), Gaps = 17/306 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSC--- 73
           HVPVLL+  +  LN   G + +D TFG GG+SR       N   + + D+D  A      
Sbjct: 9   HVPVLLKPSVDGLNIQSGGIYVDVTFGGGGHSREILSRLDNQAHLYSFDQDADAEQNVMH 68

Query: 74  --GQETMRDYKE-QFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSF 127
             G    R   + +F+  ++ F  L++++   GV   DG++ DLGVSS   D   RGFSF
Sbjct: 69  REGSTEKRFVDDARFTFVRSNFRYLKNWMRYYGVEKIDGLLADLGVSSHHFDDESRGFSF 128

Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           +   PLDMRM+  +G++A+DVVN  + + L  +  + GE KQ+ RIA A+VK R      
Sbjct: 129 RFDAPLDMRMNKRAGLTAADVVNDYDEEALANLFYLYGELKQSRRIAAALVKARAQQRIA 188

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           TTQD   L      F +        + FQALRI VN+E++ L + L+SA + L++GG L 
Sbjct: 189 TTQDF--LKATEPLFKREREKKDMAKLFQALRIEVNHEMDALKEMLQSATELLRSGGRLS 246

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+++HSLEDR+VK    + + +   V+        P  F  +  KV+VP+ ++   N RS
Sbjct: 247 VITYHSLEDRIVKNMMKAGNAEGKKVQDFYGRIETP--FNLVNNKVIVPSADEQQENPRS 304

Query: 307 RSAKLR 312
           RSAKLR
Sbjct: 305 RSAKLR 310


>gi|296877054|ref|ZP_06901095.1| S-adenosyl-methyltransferase MraW [Streptococcus parasanguinis ATCC
           15912]
 gi|296431915|gb|EFH17721.1| S-adenosyl-methyltransferase MraW [Streptococcus parasanguinis ATCC
           15912]
          Length = 316

 Score =  171 bits (432), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 111/320 (34%), Positives = 177/320 (55%), Gaps = 19/320 (5%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALD 65
           MS   HH     V VLL + I +L+  P  + +DAT G  G+S           ++ A D
Sbjct: 1   MSKEFHH-----VTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLTKLNESGHLYAFD 55

Query: 66  RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120
           +D  A+   +  +  + E+   +  +  F  L++ + D GV   +G+ +DLGVSS Q+D 
Sbjct: 56  QDQHAIENAKIRLAPFIEKGMVTFIKDNFRHLKERLNDIGVTEINGICYDLGVSSPQLDE 115

Query: 121 GDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS++K  PLDMRM+  + ++A +VVN  +  DL RI    GE+K + +IA  I + 
Sbjct: 116 RERGFSYKKDAPLDMRMNQEASLTAYEVVNTYDYHDLVRIFFKYGEDKFSKQIARKIEQA 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
           R   P +TT +L+ +I K+   +K    + HPA + FQA+RI VN+E+    + ++ A  
Sbjct: 176 RAIKPIETTTELAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMD 234

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPT 296
            L   G + V++FHSLEDRL K+ F   S  +V      IP +  P + + I +K ++P+
Sbjct: 235 LLALDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKM-ELINRKPILPS 293

Query: 297 QEDVAFNRRSRSAKLRAGMR 316
           +E++  N RS SAKLR   +
Sbjct: 294 EEELEENNRSHSAKLRVARK 313


>gi|327313078|ref|YP_004328515.1| S-adenosyl-methyltransferase MraW [Prevotella denticola F0289]
 gi|326945605|gb|AEA21490.1| S-adenosyl-methyltransferase MraW [Prevotella denticola F0289]
          Length = 314

 Score =  171 bits (432), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 114/304 (37%), Positives = 174/304 (57%), Gaps = 17/304 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAV-SCGQ 75
           HVPVLL + I  LN   G + +D TFG GG+SR   S  + GS++ + D+D  A  + G+
Sbjct: 9   HVPVLLNESIEGLNLHAGGIYVDVTFGGGGHSREILSRLEAGSHLYSFDQDADAEQNIGR 68

Query: 76  ETMRDYK-EQFSLFQATFSQLQDY-----VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
             +   + ++F+  ++ F  L+++     VP   +DG++ DLGVSS   D   RGFSF+ 
Sbjct: 69  MGLSSEQVDRFTFIRSNFRYLKNWMRYYSVPH--IDGLLADLGVSSHHFDDETRGFSFRF 126

Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM+  +G++A+D++N+ + + L  IL + GE KQ+ RIA AIVK R+   ++TT
Sbjct: 127 EAPLDMRMNKRAGMTAADILNEYDEEHLADILYLYGELKQSRRIAAAIVKGREQKAYKTT 186

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            DL  L+    +F +        + FQALRI VN E++ L + L +A   L  GG L V+
Sbjct: 187 NDL--LVITDPFFRRAREKKDMAKLFQALRIEVNYEMDALREMLLAAIGLLSPGGRLSVI 244

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           ++HSLEDR+VK    S + +    +        P  F+ +  KV+    ++   N RSRS
Sbjct: 245 TYHSLEDRMVKNVMKSGNIEGKVSQDFFGRIDTP--FRLVNSKVITANNDEQERNPRSRS 302

Query: 309 AKLR 312
           AKLR
Sbjct: 303 AKLR 306


>gi|15924169|ref|NP_371703.1| S-adenosyl-methyltransferase mraW [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|15926762|ref|NP_374295.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus N315]
 gi|21282791|ref|NP_645879.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus MW2]
 gi|49483342|ref|YP_040566.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|49486019|ref|YP_043240.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|148267671|ref|YP_001246614.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus JH9]
 gi|150393729|ref|YP_001316404.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156979500|ref|YP_001441759.1| hypothetical protein SAHV_1169 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|161509356|ref|YP_001575015.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|221140649|ref|ZP_03565142.1| S-adenosyl-methyltransferase [Staphylococcus aureus subsp. aureus
           str. JKD6009]
 gi|253314966|ref|ZP_04838179.1| S-adenosyl-methyltransferase [Staphylococcus aureus subsp. aureus
           str. CF-Marseille]
 gi|253733582|ref|ZP_04867747.1| S-adenosyl-methyltransferase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|255005966|ref|ZP_05144567.2| S-adenosyl-methyltransferase [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257425233|ref|ZP_05601658.1| methylase MraW [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257427893|ref|ZP_05604291.1| methylase MraW [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257430526|ref|ZP_05606908.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Staphylococcus aureus subsp. aureus 68-397]
 gi|257433287|ref|ZP_05609645.1| S-adenosyl-methyltransferase mraW [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257436129|ref|ZP_05612176.1| methylase MraW [Staphylococcus aureus subsp. aureus M876]
 gi|257795765|ref|ZP_05644744.1| methylase MraW [Staphylococcus aureus A9781]
 gi|258415989|ref|ZP_05682259.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus A9763]
 gi|258419736|ref|ZP_05682703.1| methylase MraW [Staphylococcus aureus A9719]
 gi|258444516|ref|ZP_05692845.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus A8115]
 gi|258447651|ref|ZP_05695795.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Staphylococcus aureus A6300]
 gi|258449493|ref|ZP_05697596.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus A6224]
 gi|258451877|ref|ZP_05699898.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus A5948]
 gi|258454872|ref|ZP_05702836.1| S-adenosyl-methyltransferase mraW [Staphylococcus aureus A5937]
 gi|262048753|ref|ZP_06021635.1| hypothetical protein SAD30_1583 [Staphylococcus aureus D30]
 gi|262051681|ref|ZP_06023900.1| hypothetical protein SA930_1508 [Staphylococcus aureus 930918-3]
 gi|269202794|ref|YP_003282063.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282892665|ref|ZP_06300900.1| methylase MraW [Staphylococcus aureus A8117]
 gi|282903731|ref|ZP_06311619.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus C160]
 gi|282905495|ref|ZP_06313350.1| methylase MraW [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282908470|ref|ZP_06316300.1| MraW methylase [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282910752|ref|ZP_06318555.1| MraW methylase [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282913955|ref|ZP_06321742.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus M899]
 gi|282916429|ref|ZP_06324191.1| methylase MraW [Staphylococcus aureus subsp. aureus D139]
 gi|282918877|ref|ZP_06326612.1| methylase MraW [Staphylococcus aureus subsp. aureus C427]
 gi|282919960|ref|ZP_06327689.1| methylase MraW [Staphylococcus aureus A9765]
 gi|282924000|ref|ZP_06331676.1| methylase MraW [Staphylococcus aureus subsp. aureus C101]
 gi|282929224|ref|ZP_06336799.1| methylase MraW [Staphylococcus aureus A10102]
 gi|283770241|ref|ZP_06343133.1| S-adenosyl-methyltransferase [Staphylococcus aureus subsp. aureus
           H19]
 gi|283957922|ref|ZP_06375373.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|284024103|ref|ZP_06378501.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus 132]
 gi|293500988|ref|ZP_06666839.1| methylase MraW [Staphylococcus aureus subsp. aureus 58-424]
 gi|293509946|ref|ZP_06668655.1| methylase MraW [Staphylococcus aureus subsp. aureus M809]
 gi|293526535|ref|ZP_06671220.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus M1015]
 gi|294848172|ref|ZP_06788919.1| methylase MraW [Staphylococcus aureus A9754]
 gi|295407117|ref|ZP_06816918.1| methylase MraW [Staphylococcus aureus A8819]
 gi|295427665|ref|ZP_06820297.1| methylase MraW [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|296276145|ref|ZP_06858652.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297208179|ref|ZP_06924609.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|297245997|ref|ZP_06929856.1| methylase MraW [Staphylococcus aureus A8796]
 gi|297591377|ref|ZP_06950015.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus MN8]
 gi|300912257|ref|ZP_07129700.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|304381261|ref|ZP_07363914.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|42560201|sp|P60392|RSMH_STAAN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|42560202|sp|P60393|RSMH_STAA8 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|42560203|sp|P60394|RSMH_STAAW RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|48474288|sp|P60485|RSMH_STAAM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|54036187|sp|Q6GA33|RSMH_STAAS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|54036188|sp|Q6GHQ6|RSMH_STAAR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262826623|sp|A7X1B8|RSMH_STAA1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262826627|sp|A6U0Z9|RSMH_STAA2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262826631|sp|A5IS65|RSMH_STAA9 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262826654|sp|A8Z3M0|RSMH_STAAT RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262831474|sp|Q2FHQ8|RSMH_STAA3 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|2149891|gb|AAC45622.1| unknown [Staphylococcus aureus]
 gi|13700978|dbj|BAB42274.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           N315]
 gi|14246949|dbj|BAB57341.1| S-adenosyl-methyltransferase mraW [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|21204229|dbj|BAB94927.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49241471|emb|CAG40157.1| MraW methylase family protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49244462|emb|CAG42890.1| MraW methylase family protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|147740740|gb|ABQ49038.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus JH9]
 gi|149946181|gb|ABR52117.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156721635|dbj|BAF78052.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|160368165|gb|ABX29136.1| S-adenosyl-methyltransferase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253728452|gb|EES97181.1| S-adenosyl-methyltransferase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257271690|gb|EEV03828.1| methylase MraW [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257274734|gb|EEV06221.1| methylase MraW [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257278654|gb|EEV09273.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Staphylococcus aureus subsp. aureus 68-397]
 gi|257281380|gb|EEV11517.1| S-adenosyl-methyltransferase mraW [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257284411|gb|EEV14531.1| methylase MraW [Staphylococcus aureus subsp. aureus M876]
 gi|257789737|gb|EEV28077.1| methylase MraW [Staphylococcus aureus A9781]
 gi|257839325|gb|EEV63799.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus A9763]
 gi|257844321|gb|EEV68703.1| methylase MraW [Staphylococcus aureus A9719]
 gi|257850009|gb|EEV73962.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus A8115]
 gi|257853842|gb|EEV76801.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Staphylococcus aureus A6300]
 gi|257857481|gb|EEV80379.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus A6224]
 gi|257860485|gb|EEV83312.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus A5948]
 gi|257863255|gb|EEV86019.1| S-adenosyl-methyltransferase mraW [Staphylococcus aureus A5937]
 gi|259160416|gb|EEW45441.1| hypothetical protein SA930_1508 [Staphylococcus aureus 930918-3]
 gi|259163209|gb|EEW47769.1| hypothetical protein SAD30_1583 [Staphylococcus aureus D30]
 gi|262075084|gb|ACY11057.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus ED98]
 gi|269940673|emb|CBI49052.1| MraW methylase family protein [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282313972|gb|EFB44364.1| methylase MraW [Staphylococcus aureus subsp. aureus C101]
 gi|282316687|gb|EFB47061.1| methylase MraW [Staphylococcus aureus subsp. aureus C427]
 gi|282319869|gb|EFB50217.1| methylase MraW [Staphylococcus aureus subsp. aureus D139]
 gi|282322023|gb|EFB52347.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus M899]
 gi|282325357|gb|EFB55666.1| MraW methylase [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282327532|gb|EFB57815.1| MraW methylase [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282330787|gb|EFB60301.1| methylase MraW [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282589183|gb|EFB94280.1| methylase MraW [Staphylococcus aureus A10102]
 gi|282594676|gb|EFB99660.1| methylase MraW [Staphylococcus aureus A9765]
 gi|282595349|gb|EFC00313.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus C160]
 gi|282764662|gb|EFC04787.1| methylase MraW [Staphylococcus aureus A8117]
 gi|283460388|gb|EFC07478.1| S-adenosyl-methyltransferase [Staphylococcus aureus subsp. aureus
           H19]
 gi|283470389|emb|CAQ49600.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus ST398]
 gi|283790071|gb|EFC28888.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|285816861|gb|ADC37348.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus 04-02981]
 gi|290920607|gb|EFD97670.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291095993|gb|EFE26254.1| methylase MraW [Staphylococcus aureus subsp. aureus 58-424]
 gi|291467396|gb|EFF09913.1| methylase MraW [Staphylococcus aureus subsp. aureus M809]
 gi|294824972|gb|EFG41394.1| methylase MraW [Staphylococcus aureus A9754]
 gi|294967970|gb|EFG43998.1| methylase MraW [Staphylococcus aureus A8819]
 gi|295128023|gb|EFG57657.1| methylase MraW [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|296886918|gb|EFH25821.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|297177161|gb|EFH36415.1| methylase MraW [Staphylococcus aureus A8796]
 gi|297576263|gb|EFH94979.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus MN8]
 gi|300886503|gb|EFK81705.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|304340244|gb|EFM06185.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|312438444|gb|ADQ77515.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus TCH60]
 gi|312829573|emb|CBX34415.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus ECT-R 2]
 gi|315130970|gb|EFT86954.1| S-adenosyl-methyltransferase [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|315196909|gb|EFU27252.1| S-adenosyl-methyltransferase [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|329313847|gb|AEB88260.1| Ribosomal RNA small subunit methyltransferase H [Staphylococcus
           aureus subsp. aureus T0131]
 gi|329725033|gb|EGG61529.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus 21189]
 gi|329727402|gb|EGG63858.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus 21172]
          Length = 311

 Score =  171 bits (432), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 104/306 (33%), Positives = 165/306 (53%), Gaps = 13/306 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+ V+L + I  LN     V +D T G  G++       ++   +IA+D+D  A+   +E
Sbjct: 4   HISVMLNETIDYLNVKENGVYIDCTLGGAGHALYLLNQLNDDGRLIAIDQDQTAIDNAKE 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++D+  + +   + F +L   + D   + VDG+ +DLGVSS Q+D  +RGFS+     L
Sbjct: 64  VLKDHLHKVTFVHSNFRELTQILKDLNIEKVDGIYYDLGVSSPQLDIPERGFSYHHDATL 123

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     ++A ++VN  + + L +I    GEEK + +IA  I   R+  P  TT +L 
Sbjct: 124 DMRMDQTQELTAYEIVNNWSYEALVKIFYRYGEEKFSKQIARRIEAHREQQPITTTLELV 183

Query: 193 SLIQKTVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
            +I++ +  +K  R   HPA R FQALRI VN+E+      +  A + +K  G + V++F
Sbjct: 184 DIIKEGIP-AKARRKGGHPAKRVFQALRIAVNDELSAFEDSIEQAIELVKVDGRISVITF 242

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           HSLEDRL K+ F          R +  IP    P + + + +K +  T+ED+  N R+RS
Sbjct: 243 HSLEDRLCKQVFQEYEKGPEVPRGLPVIPEAYTPKL-KRVNRKPITATEEDLDDNNRARS 301

Query: 309 AKLRAG 314
           AKLR  
Sbjct: 302 AKLRVA 307


>gi|315194065|gb|EFU24458.1| S-adenosyl-methyltransferase [Staphylococcus aureus subsp. aureus
           CGS00]
          Length = 311

 Score =  171 bits (432), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 104/306 (33%), Positives = 165/306 (53%), Gaps = 13/306 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+ V+L + I  LN     V +D T G  G++       ++   +IA+D+D  A+   +E
Sbjct: 4   HISVMLNETIDYLNIKENGVYIDCTLGGAGHALYLLNQLNDDGRLIAIDQDQTAIDNAKE 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++D+  + +   + F +L   + D   + VDG+ +DLGVSS Q+D  +RGFS+     L
Sbjct: 64  VLKDHLHKVTFVHSNFRELTQILKDLNIEKVDGIYYDLGVSSPQLDIPERGFSYHHDATL 123

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     ++A ++VN  + + L +I    GEEK + +IA  I   R+  P  TT +L 
Sbjct: 124 DMRMDQTQELTAYEIVNNWSYEALVKIFYRYGEEKFSKQIARRIEAHREQQPITTTLELV 183

Query: 193 SLIQKTVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
            +I++ +  +K  R   HPA R FQALRI VN+E+      +  A + +K  G + V++F
Sbjct: 184 DIIKEGIP-AKARRKGGHPAKRVFQALRIAVNDELSAFEDSIEQAIELVKVDGRISVITF 242

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           HSLEDRL K+ F          R +  IP    P + + + +K +  T+ED+  N R+RS
Sbjct: 243 HSLEDRLCKQVFQEYEKGPEVPRGLPVIPEAYTPKL-KRVNRKPITATEEDLDDNNRARS 301

Query: 309 AKLRAG 314
           AKLR  
Sbjct: 302 AKLRVA 307


>gi|291278991|ref|YP_003495826.1| S-adenosyl-methyltransferase [Deferribacter desulfuricans SSM1]
 gi|290753693|dbj|BAI80070.1| S-adenosyl-methyltransferase [Deferribacter desulfuricans SSM1]
          Length = 306

 Score =  171 bits (432), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 113/310 (36%), Positives = 168/310 (54%), Gaps = 17/310 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVS----- 72
           H PVL  ++I+        VI+D T G GG++    K      +I LDRD  A+      
Sbjct: 2   HKPVLYNELISFFKGLKNGVIVDCTGGGGGHAEGILKEIKPERLIILDRDEDAIKRLNEK 61

Query: 73  -CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
             G E +  YK  FS   +    L+     + V+G+  D GVS+  +    RGFSF+++G
Sbjct: 62  FKGMENVEIYKSNFSEIDSVLQSLKI----EKVNGLYADFGVSNFHLLDSKRGFSFRRNG 117

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  S  ++A  VVN+ + + L  I    GEE+ AS+IA AIVK R+S    TT +
Sbjct: 118 PLDMRMDKSLYLTAEKVVNEYSAETLKNIFRKFGEERFASKIADAIVKTRKSKRITTTLE 177

Query: 191 LSSLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L+ +++  +   F K   +HPAT+ F ALRIF+NNE+E +   L+     +  GG++  +
Sbjct: 178 LAEIVKNAIPERFHKPG-VHPATKVFMALRIFINNELESIESLLKKLPTIVDKGGIVAFI 236

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA-HPAVFQSITKKVVVPTQEDVAFNRRSR 307
           SFHSLEDRLVK++        +        N      F+ +TKK + PT++++  N  SR
Sbjct: 237 SFHSLEDRLVKEYLQYYEKSCICPPDYPVCNCDKEKQFKILTKKPITPTEKEITENPLSR 296

Query: 308 SAKLRAGMRT 317
           SAK+R G+R 
Sbjct: 297 SAKMRVGVRV 306


>gi|189502287|ref|YP_001958004.1| hypothetical protein Aasi_0908 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|263446692|sp|B3ESS3|RSMH_AMOA5 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|189497728|gb|ACE06275.1| hypothetical protein Aasi_0908 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 310

 Score =  171 bits (432), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 116/303 (38%), Positives = 166/303 (54%), Gaps = 11/303 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPFAVSCGQE 76
           H PVLLE+ +  L   P  + +D TFG GG++++     K G  + A D+D  A S    
Sbjct: 12  HQPVLLEESLQGLAIQPDGIYIDTTFGGGGHAKAILAQLKRG-KLFAFDQDEDAESIAS- 69

Query: 77  TMRDYKEQFSLFQATFSQ-LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           T  D    F    + F Q    Y   + +DG++ DLGVSS QID   RGFS +  GPLDM
Sbjct: 70  TWHDPNFTFIRANSRFIQRFLAYHQIEKIDGLIADLGVSSYQIDTALRGFSTRSEGPLDM 129

Query: 136 RMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM   S ++AS +VN  + + LT++    GE   A  +A A++  R   P +TTQ L  +
Sbjct: 130 RMDQSSSLTASQIVNTYSFEALTQLFRTYGELHSAPALAKALIAARTKHPIETTQSLKEI 189

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
                   K+ +     + FQALRI VN+E+  L   L  + + LK GG L+++S+HSLE
Sbjct: 190 ALPFSPPRKSAKF--LAQVFQALRIEVNDELGALKSLLEQSLQLLKPGGRLVIISYHSLE 247

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           DRLVK+F  + + +    + M  +   P  F  + KK +VPT+E++  N RSRSAKLR G
Sbjct: 248 DRLVKRFIKTGNFEGELDKDMYGNPLQP--FVPVYKKAIVPTEEELVINSRSRSAKLRVG 305

Query: 315 MRT 317
            RT
Sbjct: 306 ERT 308


>gi|34556618|ref|NP_906433.1| S-adenosyl-methyltransferase MraW [Wolinella succinogenes DSM 1740]
 gi|42559439|sp|Q7MSS6|RSMH_WOLSU RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|34482332|emb|CAE09333.1| conserved hypothetical protein CJ0693C [Wolinella succinogenes]
          Length = 303

 Score =  171 bits (432), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 110/301 (36%), Positives = 172/301 (57%), Gaps = 14/301 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQET 77
           H+ VL  +V+ +  P      +D T G GG+S +  K     ++I +D+DP A+   Q+ 
Sbjct: 5   HLSVLKNEVLEIFAPLSEGYFIDCTLGFGGHSEAILKAHPKLSLIGIDQDPHALEFSQKR 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
           +  +K++FS  +  FS++   + +  + G++ D+GVSS+Q+D   RGFSF  S  LDMRM
Sbjct: 65  LAPFKDRFSFREGRFSEVLPTLKELPIAGILADIGVSSLQLDDSSRGFSFH-SERLDMRM 123

Query: 138 SCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
           + +  +SA +VVN      L RI    GE K++ ++   I + R+     + + LS LI+
Sbjct: 124 NPNAQLSALEVVNSYPQDRLERIFKEYGEIKESKKLVSLISEERKKGRITSAEALSRLIE 183

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
           +  +F +   IHPAT +FQA+RI VN+E+ E+ + L++  +  K  G + ++SFHSLEDR
Sbjct: 184 R--HFKRVGNIHPATLAFQAIRIEVNDELGEIGRALQTIGEIAK--GRVSIISFHSLEDR 239

Query: 257 LVKKFFASRSGKVM----AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LVK FF   S   +    A R    +N      Q +TKK +V T E+   N RSRSAK+R
Sbjct: 240 LVKNFFKEWSNSCLCPPEAFRCTCGNNHEKG--QILTKKPLVATPEESKANPRSRSAKMR 297

Query: 313 A 313
           A
Sbjct: 298 A 298


>gi|27467772|ref|NP_764409.1| hypothetical protein SE0854 [Staphylococcus epidermidis ATCC 12228]
 gi|30173015|sp|Q8CSX7|RSMH_STAES RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|27315316|gb|AAO04451.1|AE016746_241 conserved hypothetical protein [Staphylococcus epidermidis ATCC
           12228]
 gi|329730036|gb|EGG66427.1| S-adenosyl-methyltransferase MraW [Staphylococcus epidermidis
           VCU144]
 gi|329736180|gb|EGG72452.1| S-adenosyl-methyltransferase MraW [Staphylococcus epidermidis
           VCU028]
          Length = 311

 Score =  171 bits (432), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 104/305 (34%), Positives = 167/305 (54%), Gaps = 11/305 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           HV V+L + I  LN     V +D T G  G++       ++   +IA+D+D  A+   +E
Sbjct: 4   HVSVMLNETIDYLNIKEDGVYVDCTLGGAGHALYLLNQLNDKGRLIAIDQDLTAIENAKE 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++++  + +     F +L + + +   + VDG+ +DLGVSS Q+D  +RGFS+     L
Sbjct: 64  VLKEHLHKVTFVHNNFRELTNILNELEIEKVDGIYYDLGVSSPQLDVPERGFSYHNDAKL 123

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     +SA +VVNQ + + L RI    GEEK + +IA  I   R+  P +TT +L 
Sbjct: 124 DMRMDQTQSLSAYEVVNQWSYEALVRIFFRYGEEKFSKQIARRIEAHREQQPIETTLELV 183

Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I++ +   ++    HPA R FQA+RI VN+E+      +  A + +K GG + V++FH
Sbjct: 184 DVIKEGIPAKARRKGGHPAKRVFQAIRIAVNDELSAFEDSVEQAIECVKVGGRISVITFH 243

Query: 252 SLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDRL K+ F    +   V     +IP    P + + + +K +  T +D+  N R+RSA
Sbjct: 244 SLEDRLCKQIFQEFEKGPDVPRGLPVIPEAYTPKL-KRVNRKPITATDDDLNENNRARSA 302

Query: 310 KLRAG 314
           KLR  
Sbjct: 303 KLRVA 307


>gi|251810609|ref|ZP_04825082.1| S-adenosyl-methyltransferase [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|282876390|ref|ZP_06285257.1| S-adenosyl-methyltransferase MraW [Staphylococcus epidermidis
           SK135]
 gi|251805769|gb|EES58426.1| S-adenosyl-methyltransferase [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|281295415|gb|EFA87942.1| S-adenosyl-methyltransferase MraW [Staphylococcus epidermidis
           SK135]
 gi|329734446|gb|EGG70759.1| S-adenosyl-methyltransferase MraW [Staphylococcus epidermidis
           VCU045]
          Length = 311

 Score =  171 bits (432), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 104/305 (34%), Positives = 167/305 (54%), Gaps = 11/305 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           HV V+L + I  LN     V +D T G  G++       ++   +IA+D+D  A+   +E
Sbjct: 4   HVSVMLNETIDYLNIKEDGVYVDCTLGGAGHALYLLNQLNDKGRLIAIDQDLTAIENAKE 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++++  + +     F +L + + +   + VDG+ +DLGVSS Q+D  +RGFS+     L
Sbjct: 64  VLKEHLHKVTFVHNNFRELTNILNELEIEKVDGIYYDLGVSSPQLDVPERGFSYHNDAKL 123

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     +SA +VVNQ + + L RI    GEEK + +IA  I   R+  P +TT +L 
Sbjct: 124 DMRMDQTQSLSAYEVVNQWSYEALVRIFFRYGEEKFSKQIARRIEAHREQQPIETTLELV 183

Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I++ +   ++    HPA R FQA+RI VN+E+      +  A + +K GG + V++FH
Sbjct: 184 DVIKEGIPAKARRKGGHPAKRVFQAIRIAVNDELSAFEDSVEQAIECVKVGGRISVITFH 243

Query: 252 SLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDRL K+ F    +   V     +IP    P + + + +K +  T +D+  N R+RSA
Sbjct: 244 SLEDRLCKQIFQEFEKGPDVPRGLPVIPEAYTPKL-KRVNRKPITATDDDLNDNNRARSA 302

Query: 310 KLRAG 314
           KLR  
Sbjct: 303 KLRVA 307


>gi|313772507|gb|EFS38473.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL074PA1]
 gi|313830652|gb|EFS68366.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL007PA1]
 gi|313833872|gb|EFS71586.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL056PA1]
 gi|314973654|gb|EFT17750.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL053PA1]
 gi|314976247|gb|EFT20342.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL045PA1]
 gi|314983544|gb|EFT27636.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL005PA1]
 gi|315096274|gb|EFT68250.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL038PA1]
 gi|327325910|gb|EGE67700.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL096PA2]
 gi|327446210|gb|EGE92864.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL043PA2]
 gi|327447807|gb|EGE94461.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL043PA1]
 gi|328760593|gb|EGF74161.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL099PA1]
          Length = 337

 Score =  171 bits (432), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 111/305 (36%), Positives = 166/305 (54%), Gaps = 13/305 (4%)

Query: 20  HVPVLLEKVIALLN---PAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCG 74
           H+PV+  +++ LL     +  +V +D T G GG++ +  +   +V  + +DRD  A++  
Sbjct: 14  HIPVMRARILDLLAVVLKSGRRVHVDGTLGMGGHAEAVLRRFPDVELVGIDRDQQALTMA 73

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +  +  + ++  L  A   +L + + D G   VD V+ DLG+SS QID  +RGFS+    
Sbjct: 74  EARLEPFADRVHLVHAVHDELPEVLDDLGLDYVDSVLLDLGLSSFQIDEVERGFSYSVDS 133

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM   SG +A+ ++N+++   L R+L   GEEK A RI  AIV  R   P +T+  
Sbjct: 134 PLDMRMDQSSGRTAAQILNESDPGALVRMLREYGEEKFADRIVRAIVTERDRQPIETSGR 193

Query: 191 LSSLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L  +I   +     +    HPA R+FQALRI VN E+E L   L  A   L  GG + V+
Sbjct: 194 LVEIITGAIPATVRRKRHSHPAKRTFQALRIAVNREMETLPAVLPRALDRLDVGGRIAVL 253

Query: 249 SFHSLEDRLVKKFFASRSGKVM-AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           S+HSLEDR VK+ F         A   M+P +   A F  +T+    P  ++VA N RS 
Sbjct: 254 SYHSLEDRPVKEAFRDACADTAPAGLPMVPESM-AAKFNPVTRGAERPDADEVATNPRSA 312

Query: 308 SAKLR 312
           SA+LR
Sbjct: 313 SARLR 317


>gi|172040893|ref|YP_001800607.1| S-adenosyl-methyltransferase MraW [Corynebacterium urealyticum DSM
           7109]
 gi|263446151|sp|B1VHD2|RSMH_CORU7 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|171852197|emb|CAQ05173.1| S-adenosyl-methyltransferase [Corynebacterium urealyticum DSM 7109]
          Length = 353

 Score =  171 bits (432), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 108/331 (32%), Positives = 183/331 (55%), Gaps = 44/331 (13%)

Query: 20  HVPVLLEKVIALLN------PAPGK-VILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70
           HVPV+ ++++ L+        AP + +I+D T GAGG++ +F +   N  VI LDRDP A
Sbjct: 14  HVPVMRQRMVELVGIGVTAGSAPAQPIIVDGTLGAGGHTEAFLEAYPNAIVIGLDRDPNA 73

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYV------PD-------KGVDGVVFDLGVSSMQ 117
           ++  +  +  + ++F  +Q  F  + + +      PD       +G+ G +FDLGVSSMQ
Sbjct: 74  LAEARARLERFGQRFFSYQTRFDGIGEALEHFSEDPDFPVDIREQGISGFLFDLGVSSMQ 133

Query: 118 IDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
           +D  DRGF+++   PLDMRM  S  ++A++++N     +L RIL   G+EK A +IA A+
Sbjct: 134 LDQEDRGFAYRVDAPLDMRMDPSSRLTAAEILNTYEHGELARILKRYGDEKFAGKIASAV 193

Query: 177 VKRRQSAPFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           ++ R+  PF+ +  L  L+  T+   ++    HPA R+FQALRI VN E+E L   + +A
Sbjct: 194 IREREKQPFENSARLVDLLYATIPAAARRTGGHPAKRTFQALRIEVNAELESLELVIPAA 253

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV----------F 285
              L+  G  + +S+ SLED++VK+           ++ M  S+  P +          F
Sbjct: 254 FSWLRVDGAGVFMSYQSLEDKIVKQ----------QLKGMTESSTPPGLPVELPGTEPEF 303

Query: 286 QSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           + +T+     +++++A N RS   ++RA  R
Sbjct: 304 ELLTRGAEKASEQEIAENSRSAPVRVRAARR 334


>gi|225871093|ref|YP_002747040.1| S-adenosyl-methyltransferase MraW [Streptococcus equi subsp. equi
           4047]
 gi|262826692|sp|C0M7A8|RSMH_STRE4 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|225700497|emb|CAW94939.1| S-adenosyl-methyltransferase MraW [Streptococcus equi subsp. equi
           4047]
          Length = 316

 Score =  170 bits (431), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 108/309 (34%), Positives = 173/309 (55%), Gaps = 14/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HV VLL + + +L+  P  + +DAT G  G+S     +     ++   D+D  A+   QE
Sbjct: 7   HVTVLLHEAVDMLDIKPDGIYVDATLGGSGHSAYLLSLLGDKGHLYCFDQDQKAIDHAQE 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            ++ Y  K Q +  +  F  L+  + + GV   DG+++DLGVSS Q+D  +RGFS+++  
Sbjct: 67  QLKPYIDKGQVTFIKDNFRHLKARLLEHGVTEIDGILYDLGVSSPQLDERERGFSYKQDA 126

Query: 132 PLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM S + ++A +VVN  +  DL RI    GE+K + +IA  I + R   P  TT +
Sbjct: 127 PLDMRMDSQAALTAYEVVNTYDFNDLVRIFFKYGEDKFSKQIARKIEQARAIKPISTTTE 186

Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L++LI K+   +K    + HPA + FQA+RI VN+E+      ++ A + L   G + V+
Sbjct: 187 LAALI-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADASIQRAIELLALDGRISVI 245

Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K  F   S          IP    P + + +++K ++P+Q+++  N R+ 
Sbjct: 246 TFHSLEDRLTKHLFKEASTADAPKGLPFIPDELKPKL-ELVSRKPILPSQKELMANNRAH 304

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 305 SAKLRVARK 313


>gi|163752984|ref|ZP_02160108.1| S-adenosylmethionine methyltransferase [Kordia algicida OT-1]
 gi|161326716|gb|EDP98041.1| S-adenosylmethionine methyltransferase [Kordia algicida OT-1]
          Length = 298

 Score =  170 bits (431), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 116/310 (37%), Positives = 171/310 (55%), Gaps = 29/310 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQE 76
           H PVLL++ +  LN     V +D TFG GG+S+    ++G N  + A D+D  A+   + 
Sbjct: 4   HNPVLLKETVDGLNIKEDGVYVDVTFGGGGHSKEILNRLGENGKLYAFDQDQDAL---EN 60

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           T+ D +  F+L    F  L+ ++   G   VDG++ D GVSS Q D  +RGFS +    L
Sbjct: 61  TIDDSR--FTLIHQNFRHLKKFLRFYGIKKVDGILGDFGVSSHQFDVAERGFSLRFEADL 118

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM   G ISA  VVN+ + +DL  IL + GE + A  IA  IV  R   P +TT++L 
Sbjct: 119 DMRMDQEGEISAYHVVNEYSEEDLRSILSLYGEVRNAKGIAAQIVSARSEEPIKTTEELR 178

Query: 193 SLIQKTVYFSKNNRIHPA-TRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             +Q+   F   +R H    + +QA+RI VN EIE L + L   ++ L+ GG L ++S+H
Sbjct: 179 VALQR---FLPKHREHKVLAQIYQAIRIEVNQEIEVLKEFLLQTQELLEKGGRLSLISYH 235

Query: 252 SLEDRLVKKF-----FASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           SLEDRLVK++     F     K    R  +P       F+ +  K+++P+ E++  N R+
Sbjct: 236 SLEDRLVKRYIRNGLFEGEPEKDFYGRVEVP-------FKKVG-KLIIPSNEEIKTNNRA 287

Query: 307 RSAKLRAGMR 316
           RSAKLR   R
Sbjct: 288 RSAKLRIAER 297


>gi|322373647|ref|ZP_08048183.1| S-adenosyl-methyltransferase MraW [Streptococcus sp. C150]
 gi|321278689|gb|EFX55758.1| S-adenosyl-methyltransferase MraW [Streptococcus sp. C150]
          Length = 316

 Score =  170 bits (431), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 110/309 (35%), Positives = 171/309 (55%), Gaps = 14/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           HV VLL + + +L+  P  + +DAT G  G+S       S   ++   D+D  A+   Q 
Sbjct: 7   HVTVLLHETVDMLDIKPDGIYVDATLGGAGHSSYLLSQLSEKGHLYCFDQDQKAIDNAQG 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            ++DY  K   +  +  F  L+  +   GV   DG+++DLGVSS Q+D  +RGFS+++  
Sbjct: 67  RLKDYIDKGMVTFIKDNFRNLRSNLEALGVSEIDGILYDLGVSSPQLDERERGFSYKQDA 126

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM+  + ++A +VVN     DL RI    GE+K + +IA  I + RQ  P +TT +
Sbjct: 127 KLDMRMNEEASLTAYEVVNTYPYNDLVRIFFKYGEDKFSKQIARKIEQARQVKPIETTTE 186

Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L+ +I K+   +K    + HPA + FQA+RI VN+E+    + ++ A   L   G + V+
Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQEALDLLAVDGRISVI 245

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F   S   V      IP +  P V   + +K ++P+QE++  N RS 
Sbjct: 246 TFHSLEDRLTKQLFKEASTVDVPKGLPFIPEDLQPKV-ALVNRKPILPSQEELEANNRSH 304

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 305 SAKLRVAKK 313


>gi|269219541|ref|ZP_06163395.1| S-adenosyl-methyltransferase MraW [Actinomyces sp. oral taxon 848
           str. F0332]
 gi|269210783|gb|EEZ77123.1| S-adenosyl-methyltransferase MraW [Actinomyces sp. oral taxon 848
           str. F0332]
          Length = 335

 Score =  170 bits (431), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 113/311 (36%), Positives = 174/311 (55%), Gaps = 11/311 (3%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCG 74
           HVPVLLE+ + LL PA      V++DAT G GG+S +F +  +N  V+ +DRDP A+   
Sbjct: 20  HVPVLLEECVNLLGPALTAEAPVMIDATLGMGGHSFAFLERFANLTVVGIDRDPEAIELA 79

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            E +  + ++F   +AT+  + D   + G     D V+ DLGVSS+Q+D   RGFS+   
Sbjct: 80  GERLARFGKRFVAVRATYDDVSDVAAEYGRAGRADAVLMDLGVSSLQLDDEGRGFSYSGD 139

Query: 131 GPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
           GPLDMRM    G +A+DV+  A+  +LTRIL   GEE+ ASRIA  I+  R + P + T 
Sbjct: 140 GPLDMRMDKTGGPTAADVLASADKAELTRILREYGEERFASRIAARILAARAAEPIERTG 199

Query: 190 DLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L+ +++  +   ++    +P  R+FQALRI VN+E+  L + +  A +A+  GG + V 
Sbjct: 200 QLADIVRDAIPAPARRTGGNPCKRTFQALRIAVNDELALLRRAIPRAIEAIAVGGRIAVE 259

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           S+ SLED++VK+  A  +         +  +      + +T+  V     ++  N RS S
Sbjct: 260 SYQSLEDKIVKREMAKGATSSTPAGLPVELDDRAPYLRLLTRGAVKADAAELQANPRSAS 319

Query: 309 AKLRAGMRTVE 319
            +LRA  R  E
Sbjct: 320 VRLRAAERLRE 330


>gi|322391027|ref|ZP_08064531.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus parasanguinis ATCC 903]
 gi|321142257|gb|EFX37731.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus parasanguinis ATCC 903]
          Length = 316

 Score =  170 bits (431), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 110/320 (34%), Positives = 177/320 (55%), Gaps = 19/320 (5%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALD 65
           MS   HH     V VLL + I +L+  P  + +DAT G  G+S           ++ A D
Sbjct: 1   MSKEFHH-----VTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLTKLNESGHLYAFD 55

Query: 66  RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120
           +D  A+   +  +  + E+   +  +  F  L++ + + GV   DG+ +DLGVSS Q+D 
Sbjct: 56  QDQHAIENAKIRLAPFIEKGMVTFIKDNFRHLKERLNELGVTEIDGICYDLGVSSPQLDE 115

Query: 121 GDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS++K  PLDMRM+  + ++A +VVN  +  DL RI    GE+K + +IA  I + 
Sbjct: 116 RERGFSYKKDAPLDMRMNQEASLTAYEVVNSYDYHDLVRIFFKYGEDKFSKQIARKIEQA 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
           R   P +TT +L+ +I K+   +K    + HPA + FQA+RI VN+E+    + ++ A  
Sbjct: 176 RAIKPIETTTELAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMD 234

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPT 296
            L   G + V++FHSLEDRL K+ F   S  +V      IP +  P + + + +K ++P+
Sbjct: 235 LLALDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKM-ELVNRKPILPS 293

Query: 297 QEDVAFNRRSRSAKLRAGMR 316
           +E++  N RS SAKLR   +
Sbjct: 294 EEELEENNRSHSAKLRVARK 313


>gi|209559798|ref|YP_002286270.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes NZ131]
 gi|262827234|sp|B5XML3|RSMH_STRPZ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|209540999|gb|ACI61575.1| S-adenosyl-methyltransferase mraW [Streptococcus pyogenes NZ131]
          Length = 316

 Score =  170 bits (431), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 107/308 (34%), Positives = 173/308 (56%), Gaps = 12/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGS--NVIALDRDPFAVSCGQE 76
           HV VLL + + +L+  P  + +DAT G  G+S     K+G   ++   D+D  A+   Q 
Sbjct: 7   HVTVLLHETVDMLDIKPDGIYVDATLGGSGHSAYLLSKLGEEGHLYCFDQDQKAIDNAQV 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSG 131
           T++ Y  K Q +  +  F  L+  +   GVD   G+++DLGVSS Q+D  +RGFS+++  
Sbjct: 67  TLKSYIDKGQVTFIKDNFRHLKARLTALGVDEIDGILYDLGVSSPQLDERERGFSYKQDA 126

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM   S ++A +VVN     DL +I    GE+K + +IA  I + R   P + T +
Sbjct: 127 PLDMRMDRQSLLTAYEVVNTYPFNDLVKIFFKYGEDKFSKQIARKIEQARAIKPIEATTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ LI+      +   + HPA + FQA+RI VN+E+    + ++ A + L   G + V++
Sbjct: 187 LAELIKAAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQDAMELLALDGRISVIT 246

Query: 250 FHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDRL K+ F   S   V     +IP +  P  F+ +++K ++P+  ++  N+R+ S
Sbjct: 247 FHSLEDRLTKQLFKEASTVDVPKGLPLIPEDMKPK-FELVSRKPILPSHSELTANKRAHS 305

Query: 309 AKLRAGMR 316
           AKLR   +
Sbjct: 306 AKLRVAKK 313


>gi|119897167|ref|YP_932380.1| S-adenosyl-methyltransferase MraW [Azoarcus sp. BH72]
 gi|263446774|sp|A1K3T8|RSMH_AZOSB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|119669580|emb|CAL93493.1| SAM dependent methyltransferase [Azoarcus sp. BH72]
          Length = 312

 Score =  170 bits (431), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 120/306 (39%), Positives = 171/306 (55%), Gaps = 14/306 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQE 76
           HV VLL + +  L   P  + +D TFG GG+SR+       G  +IA DRDP A++ GQ 
Sbjct: 7   HVSVLLTEAVDALAIKPEGIYVDGTFGRGGHSRAVLARLGAGGRLIAFDRDPAAIAAGQA 66

Query: 77  TMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +  L  A FS+     D +    VDGV+ DLGVSS Q+D   RG SF+   PL
Sbjct: 67  IA---DPRLELVHAPFSEFAVVLDRLGVSAVDGVLLDLGVSSPQLDDASRGMSFRFDAPL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  S G + ++ + +A+V ++T ++   GEE+ A  IA AI   R      TT  L+
Sbjct: 124 DMRMDTSRGRTVAEWLAEASVAEITEVIRDYGEERFAYAIAKAIAAARTGGAIATTGQLA 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           ++++K V   +  + HPATRSFQALRIF+N E+EEL   L      L  GG L+V+SFHS
Sbjct: 184 AIVEKAVRTREPGQ-HPATRSFQALRIFINQELEELTTVLPDCVARLSEGGRLVVISFHS 242

Query: 253 LEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           LEDR+VK+F    +R  ++ +   +  ++  P   Q +  K   P + +VA N R+RSA 
Sbjct: 243 LEDRIVKRFLRDEARPPQLPSRLPVRAADLPPPRLQ-LVGKAQRPGEAEVAANPRARSAV 301

Query: 311 LRAGMR 316
           +R   R
Sbjct: 302 MRVAER 307


>gi|317968143|ref|ZP_07969533.1| 16S rRNA m(4)C1402 methyltranserfase [Synechococcus sp. CB0205]
          Length = 292

 Score =  170 bits (431), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 113/309 (36%), Positives = 166/309 (53%), Gaps = 34/309 (11%)

Query: 21  VPVLLEKVIA-------LLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAV 71
           +PVL  +V+A       LL    G +++D T G GG+S    +   G  ++ LD+DP A 
Sbjct: 1   MPVLAAQVLASFTALEPLLQERGGGLLIDCTLGGGGHSALLLEAHPGLKLVGLDQDPTAR 60

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
               E +  + ++ S+    F+   DY P +    V+ DLGVSS Q+D  +RGFSF+  G
Sbjct: 61  QAAAERLEPFGDRVSIVATNFA---DYQPQEPALAVMADLGVSSPQLDVAERGFSFRHDG 117

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTTQ 189
           PLDMRM+  +G +A++++ +    +L  ++   GEE+ + RIA  I +   +  PF  T 
Sbjct: 118 PLDMRMNPQAGETAAELIERLEETELADLIYAYGEERLSRRIARKIKQHLAEQGPFAGTD 177

Query: 190 DLSSLIQKTVYFSK--NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            L+ L+    Y  K    RIHPATR+FQALRI VN+E+  L + L+ A   L+ GGL+ V
Sbjct: 178 ALAYLV-AGCYAPKARRGRIHPATRTFQALRIAVNDELGVLDRLLQQAPDWLEPGGLMGV 236

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +SFHSLEDR VK  F+S                     Q +T+K     +E+ + N RSR
Sbjct: 237 ISFHSLEDRRVKTAFSSDE-----------------RLQRVTRKPETAGEEEQSSNPRSR 279

Query: 308 SAKLRAGMR 316
           SAK R   R
Sbjct: 280 SAKWRVARR 288


>gi|269798180|ref|YP_003312080.1| S-adenosyl-methyltransferase MraW [Veillonella parvula DSM 2008]
 gi|269094809|gb|ACZ24800.1| S-adenosyl-methyltransferase MraW [Veillonella parvula DSM 2008]
          Length = 310

 Score =  170 bits (431), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 108/308 (35%), Positives = 168/308 (54%), Gaps = 12/308 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
           +H  VLL + +  +   P  + +D T G  G++ +  +M      +I LD+D  A+S  +
Sbjct: 4   NHTSVLLHETVDSVVTNPKGIYVDCTLGGAGHAHAVGEMLDPEGMIIGLDQDEDALSVAR 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + + D K Q       FS L++ + + G   VDG +FDLGVSS Q+D  +RGFS+   GP
Sbjct: 64  QRLSDLKCQVLTIPTNFSNLKEALRNAGIYEVDGFIFDLGVSSYQLDTPERGFSYMNDGP 123

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM     ++A ++VN+ + + L +I+   GEE+ A RI   IV+ RQ     TT +L
Sbjct: 124 LDMRMDKDAPLTAEEIVNEYDSEQLLQIIRDYGEERWAKRIVEFIVEARQEKRITTTGEL 183

Query: 192 SSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+  +   ++ +  HPA R+FQA+RI VN E+  L      A   LK  G + V++F
Sbjct: 184 VRIIKNAIPAKARQDGPHPAKRTFQAIRIEVNRELAILHDSFVDAVSMLKPKGKIGVITF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+ K+ F   S   +      M   N H AV ++   K + P+  ++  N R+RS
Sbjct: 244 HSLEDRITKQTFKELSTACICPPQLPMCVCN-HKAVVKA-KNKAIEPSIGEIEVNPRARS 301

Query: 309 AKLRAGMR 316
           AKLR  ++
Sbjct: 302 AKLRVAVK 309


>gi|57650291|ref|YP_186055.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus COL]
 gi|151221301|ref|YP_001332123.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|68565417|sp|Q5HGQ2|RSMH_STAAC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262826643|sp|A6QG79|RSMH_STAAE RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|57284477|gb|AAW36571.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus COL]
 gi|150374101|dbj|BAF67361.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus str. Newman]
          Length = 311

 Score =  170 bits (431), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 104/306 (33%), Positives = 165/306 (53%), Gaps = 13/306 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+ V+L + I  LN     V +D T G  G++       ++   +IA+D+D  A+   +E
Sbjct: 4   HISVMLNETIDYLNVKENGVYIDCTLGGAGHALYLLNQLNDDGRLIAIDQDQTAIDNAKE 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++D+  + +   + F +L   + D   + VDG+ +DLGVSS Q+D  +RGFS+     L
Sbjct: 64  VLKDHLHRVTFVHSNFRELTQILKDLNIEKVDGIYYDLGVSSPQLDIPERGFSYHHDATL 123

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     ++A ++VN  + + L +I    GEEK + +IA  I   R+  P  TT +L 
Sbjct: 124 DMRMDQTQELTAYEIVNNWSYEALVKIFYRYGEEKFSKQIARRIEAHREQQPITTTLELV 183

Query: 193 SLIQKTVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
            +I++ +  +K  R   HPA R FQALRI VN+E+      +  A + +K  G + V++F
Sbjct: 184 DIIKEGIP-AKARRKGGHPAKRVFQALRIAVNDELSAFEDSIEQAIELVKVDGRISVITF 242

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           HSLEDRL K+ F          R +  IP    P + + + +K +  T+ED+  N R+RS
Sbjct: 243 HSLEDRLCKQVFQEYEKGPEVPRGLPVIPEAYTPKL-KRVNRKPITATEEDLDDNNRARS 301

Query: 309 AKLRAG 314
           AKLR  
Sbjct: 302 AKLRVA 307


>gi|329942720|ref|ZP_08291499.1| S-adenosyl-methyltransferase MraW [Chlamydophila psittaci Cal10]
 gi|332287316|ref|YP_004422217.1| S-adenosyl-methyltransferase [Chlamydophila psittaci 6BC]
 gi|313847900|emb|CBY16895.1| putative S-adenosyl-methyltransferase [Chlamydophila psittaci RD1]
 gi|325506769|gb|ADZ18407.1| S-adenosyl-methyltransferase [Chlamydophila psittaci 6BC]
 gi|328814980|gb|EGF84969.1| S-adenosyl-methyltransferase MraW [Chlamydophila psittaci Cal10]
 gi|328914560|gb|AEB55393.1| S-adenosyl-methyltransferase MraW [Chlamydophila psittaci 6BC]
          Length = 298

 Score =  170 bits (431), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 115/302 (38%), Positives = 160/302 (52%), Gaps = 24/302 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI---ALDRDPFAVSCGQE 76
           H+PVL+ + ++L      K   D T GAGG++ +F     +++   A DRD  A+S  +E
Sbjct: 7   HIPVLVNECLSLFANRNPKFFCDVTVGAGGHAEAFLSEYPSIVSYDASDRDSAALSLAKE 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ-KSGPLDM 135
            +  + ++     A+F  L     +   DG++ DLGVSSMQ+D   RGFSFQ     LDM
Sbjct: 67  RLEKFGDRVHFRHASFEDLSKDSKEHVYDGILADLGVSSMQLDNLSRGFSFQGDDHDLDM 126

Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM  + GI+AS+V+N    ++L +I    GEE Q    A A+V  R+     T +DL   
Sbjct: 127 RMDVTKGITASEVLNTLREEELGKIFREYGEEPQWKNAASAVVHFRKRKKIITVRDLKDA 186

Query: 195 IQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
             K    +    +IHP T  FQALR++VN E  +L   L SA + L  GG LI++SF S 
Sbjct: 187 TAKVFPSYRLRKKIHPLTLIFQALRVYVNQEDLQLKVFLESAMRWLAPGGRLIIISFCSS 246

Query: 254 EDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           EDR VK FF  A +SG                +   +TKKVV+PT E+   N R RSAKL
Sbjct: 247 EDRPVKWFFREAEKSG----------------LGTILTKKVVMPTYEETRKNPRCRSAKL 290

Query: 312 RA 313
           R 
Sbjct: 291 RC 292


>gi|227874385|ref|ZP_03992569.1| S-adenosylmethionine-dependent methyltransferase involved in cell
           envelope biogenesis [Oribacterium sinus F0268]
 gi|227839793|gb|EEJ50239.1| S-adenosylmethionine-dependent methyltransferase involved in cell
           envelope biogenesis [Oribacterium sinus F0268]
          Length = 311

 Score =  170 bits (431), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 103/307 (33%), Positives = 169/307 (55%), Gaps = 9/307 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGS--NVIALDRDPFAVSCGQE 76
           H  +++E+ +  LN     + +D T G GG+S     ++G    +I +D+D  A+    E
Sbjct: 5   HKSIMVEECMEGLNIKKDGIYVDGTLGGGGHSFHILERLGEKGQLIGIDQDEDAILAATE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++ + +Q  + +  +    + +     + VDG++ DLGVSS Q D  +RGFS++   PL
Sbjct: 65  RLKPFAKQLHIIRDNYEHFPEILSSLSIEKVDGILLDLGVSSHQFDEEERGFSYRFDAPL 124

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM      SA D+VN  +   L  I+   GE+K A  IA  IV  RQ  P +TT++L+
Sbjct: 125 DMRMDQRQDFSAKDLVNSYSESSLFHIIRDYGEDKFAKNIAKHIVLARQEKPIETTKELA 184

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I   +    +    HPA R+FQA+RI +N E+E L   L+S  +AL  GG + ++SFH
Sbjct: 185 EIISHAIPMKFRLQGGHPAKRTFQAIRIALNRELEVLENSLKSMIEALNPGGRICIISFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK+ F       +      + +    ++ + I++K + P++E++  N R++SAK
Sbjct: 245 SLEDRIVKRSFKEAENPCICPPDFPVCTCGRKSLGKVISRKAICPSEEEMEENPRAKSAK 304

Query: 311 LRAGMRT 317
           LR   RT
Sbjct: 305 LRIFERT 311


>gi|225867991|ref|YP_002743939.1| S-adenosyl-methyltransferase MraW [Streptococcus equi subsp.
           zooepidemicus]
 gi|262827289|sp|C0MGV8|RSMH_STRS7 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|225701267|emb|CAW98245.1| S-adenosyl-methyltransferase MraW [Streptococcus equi subsp.
           zooepidemicus]
          Length = 316

 Score =  170 bits (431), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 108/309 (34%), Positives = 173/309 (55%), Gaps = 14/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HV VLL + + +L+  P  + +DAT G  G+S     +     ++   D+D  A+   QE
Sbjct: 7   HVTVLLHEAVDMLDIKPDGIYVDATLGGSGHSAYLLSLLGDKGHLYCFDQDQKAIDHAQE 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            ++ Y  K Q +  +  F  L+  + + GV   DG+++DLGVSS Q+D  +RGFS+++  
Sbjct: 67  QLKPYIDKGQVTFIKDNFRHLKVRLLEHGVTEIDGILYDLGVSSPQLDERERGFSYKQDA 126

Query: 132 PLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM S + ++A +VVN  +  DL RI    GE+K + +IA  I + R   P  TT +
Sbjct: 127 PLDMRMDSQAALTAYEVVNTYDFNDLVRIFFKYGEDKFSKQIARKIEQARAIKPISTTTE 186

Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L++LI K+   +K    + HPA + FQA+RI VN+E+      ++ A + L   G + V+
Sbjct: 187 LAALI-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADASIQQAIELLALDGRISVI 245

Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K  F   S          IP    P + + +++K ++P+Q+++  N R+ 
Sbjct: 246 TFHSLEDRLTKHLFKEASTADAPKGLPFIPDELKPKL-ELVSRKPILPSQKELMANNRAH 304

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 305 SAKLRVARK 313


>gi|118587349|ref|ZP_01544775.1| cell division protein MraW [Oenococcus oeni ATCC BAA-1163]
 gi|118432173|gb|EAV38913.1| cell division protein MraW [Oenococcus oeni ATCC BAA-1163]
          Length = 314

 Score =  170 bits (431), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 108/303 (35%), Positives = 167/303 (55%), Gaps = 10/303 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77
           HV V L + +  L      + +DAT G GG++    K  +  +V + D+D  A+   ++ 
Sbjct: 7   HVTVFLRQAVENLAVKTNGIYVDATLGGGGHTDLLLKKALHGHVYSFDQDENAIDFNKKR 66

Query: 78  M-RDYKE-QFSLFQATFSQL---QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             ++  E + SL  + F  L    + +    +DG+VFDLGVSS Q D   RGFS++    
Sbjct: 67  FSKEISEGRLSLIHSNFQNLIKELNLLKVFAIDGIVFDLGVSSPQFDDEKRGFSYRSDAR 126

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S  + A  +VN    KDL  I+   GEEK AS IA  I+KRR+  P  TT++L
Sbjct: 127 LDMRMDQSQSLDAYQIVNTWEYKDLASIINRYGEEKFASSIARKIIKRREVQPIITTEEL 186

Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
              I++ +     + + HPA ++FQA+RI VN+E+  L + L+ A + L  GG + V++F
Sbjct: 187 VETIKEALPDKILHKKGHPAKKTFQAIRIAVNDELNVLQEALKQASQLLNRGGRISVITF 246

Query: 251 HSLEDRLVKKFFASRSGK-VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
            SLEDR+VK FF   + K  +  +  +P       F+ +TK  ++P+ E++  N R+ SA
Sbjct: 247 QSLEDRIVKHFFNQLATKNQLPSKLPVPDKFIQEEFKLLTKHPIIPSVEEIEENHRAHSA 306

Query: 310 KLR 312
           K R
Sbjct: 307 KFR 309


>gi|295111738|emb|CBL28488.1| S-adenosyl-methyltransferase MraW [Synergistetes bacterium SGP1]
          Length = 303

 Score =  170 bits (431), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 110/306 (35%), Positives = 169/306 (55%), Gaps = 25/306 (8%)

Query: 20  HVPVLLEKVIALLNPA--PGKV--ILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73
           H PVLL +V++ L+ A  P +   I+D T G GGYS +  +      V  +DRDP A+  
Sbjct: 4   HEPVLLPEVLSFLSEASEPRRALRIVDGTLGLGGYSEAILRAFPDGRVWGVDRDPDALRL 63

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            +  +  +  +F    A F  +   +  +   D  VFDLGVS++Q+    RGFSFQ+ GP
Sbjct: 64  AKGRLSAFAPRFCAVHANFGDIAGVLEGEAPFDAFVFDLGVSNLQLTEAARGFSFQQDGP 123

Query: 133 LDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR-QSAPFQTTQ 189
           LDMRM   G   SA++V++  +  +L RI    G+E+ + RIA+ I++RR +    +TT 
Sbjct: 124 LDMRMDPGGGAPSAAEVLSGLSADELARIFWEYGDERYSRRIANGIIQRRARGLRLETTG 183

Query: 190 DLSSLIQKTVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           +L +LI++ +      ++  HPA R FQALRIFVN+E+  +   L +       G + +V
Sbjct: 184 ELVTLIREVLPAPVQRKMGTHPARRVFQALRIFVNDELSAIESMLATLPTLAGEGCVAVV 243

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           VS+HSLEDR+VK  F S                   + +++T+  ++P +E+   N RSR
Sbjct: 244 VSYHSLEDRIVKHRFRS-------------WEKEKGLGRALTRHPLLPQEEERTRNYRSR 290

Query: 308 SAKLRA 313
           SAKLRA
Sbjct: 291 SAKLRA 296


>gi|322516106|ref|ZP_08069041.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus vestibularis ATCC 49124]
 gi|322125401|gb|EFX96751.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus vestibularis ATCC 49124]
          Length = 316

 Score =  170 bits (431), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 110/309 (35%), Positives = 171/309 (55%), Gaps = 14/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           HV VLL + + +L+  P  + +DAT G  G+S       S   ++   D+D  A+   Q 
Sbjct: 7   HVTVLLHETVDMLDIKPDGIYVDATLGGAGHSSYLLSQLSEKGHLYCFDQDQKAIDNAQV 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            ++DY  K   +  +  F  L+  +   GV   DG+++DLGVSS Q+D  +RGFS+++  
Sbjct: 67  RLKDYIDKGMVTFIKDNFRNLRSNLEALGVSEIDGILYDLGVSSPQLDERERGFSYKQDA 126

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM+  + ++A +VVN     DL RI    GE+K + +IA  I + RQ  P +TT +
Sbjct: 127 KLDMRMNEEASLTAYEVVNTYPYNDLVRIFFKYGEDKFSKQIARKIEQARQVKPIETTTE 186

Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L+ +I K+   +K    + HPA + FQA+RI VN+E+    + ++ A   L   G + V+
Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQEALDLLAVDGRISVI 245

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F   S   V      IP +  P V   + +K ++P+QE++  N RS 
Sbjct: 246 TFHSLEDRLTKQLFKEASTVDVPKGLPFIPEDLQPKV-ALVNRKPILPSQEELEANNRSH 304

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 305 SAKLRVAKK 313


>gi|258654059|ref|YP_003203215.1| S-adenosyl-methyltransferase MraW [Nakamurella multipartita DSM
           44233]
 gi|258557284|gb|ACV80226.1| S-adenosyl-methyltransferase MraW [Nakamurella multipartita DSM
           44233]
          Length = 348

 Score =  170 bits (431), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 106/303 (34%), Positives = 167/303 (55%), Gaps = 19/303 (6%)

Query: 20  HVPVLLEKVIALLNPA---------PGKVILDATFGAGGYSRSFCKMGSN--VIALDRDP 68
           H+PVL+++V  LL PA            V++DAT G GG++ +  +      V+ +DRDP
Sbjct: 27  HIPVLVDRVDQLLAPAIEAATADGATDVVLVDATLGMGGHTLALLQAHPRLRVVGIDRDP 86

Query: 69  FAVSCGQE--TMRDYKEQFSLFQATFSQLQDY----VPDKGVDGVVFDLGVSSMQIDCGD 122
            A+S  ++  T     ++  L  A + ++ +     V    V  V+FDLGVSS+Q+D  D
Sbjct: 87  QALSIAEQRITAAGLADRVELVHAVYDRIGEVIAATVASGRVQAVLFDLGVSSVQLDEAD 146

Query: 123 RGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGF++ +  PLDMRM   SGI+A++V+N     ++TRIL   GEE+ A RIA A+V  R 
Sbjct: 147 RGFAYAQDAPLDMRMDPTSGITAAEVINTYPGAEITRILREYGEERFAQRIARAVVTERA 206

Query: 182 SAPFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
             PF T+  L  L++  +   ++    +PA R+FQALRI VN+E+  L + + SA + L 
Sbjct: 207 KRPFTTSARLVELVRANIPAAARRTGGNPAKRTFQALRIEVNDELGALQRAIPSALQHLS 266

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300
             G ++V+S+ SLEDR+VK+  A  +     +        H   F+ + +    PT E++
Sbjct: 267 VAGRIVVMSYQSLEDRIVKRAIAPLTLSRTPLDLPTELPGHDPEFRWVVRGSQAPTDEEI 326

Query: 301 AFN 303
             N
Sbjct: 327 QAN 329


>gi|283769659|ref|ZP_06342555.1| S-adenosyl-methyltransferase MraW [Bulleidia extructa W1219]
 gi|283103927|gb|EFC05313.1| S-adenosyl-methyltransferase MraW [Bulleidia extructa W1219]
          Length = 318

 Score =  170 bits (431), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 107/306 (34%), Positives = 169/306 (55%), Gaps = 11/306 (3%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCG 74
           + +H+ VLLE+ +  L   P  + +DAT G  G+S    K     ++ + D+D  A+   
Sbjct: 1   MSEHISVLLEESLEALKILPEGIYVDATLGRAGHSVEILKKLTTGHLYSFDKDQQAIEEC 60

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
              ++ Y E+ +L  A FS++ + +   GV   DG++FDLGVSS Q D GDRGFS++   
Sbjct: 61  SLKLKSYAEKVTLIHADFSKMMEKLQSLGVEKVDGILFDLGVSSPQFDQGDRGFSYRFEA 120

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM  S  + A  VVN  + K+L  I     EE+ A  IA+ I + R+  P +TT +
Sbjct: 121 RLDMRMDQSQDLDAYQVVNHYSAKELKDIFLKYSEERYAPMIANKICEIRERKPIETTFE 180

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L ++++  +   +   + HPA + FQA+R+ VN+E+  L Q L  A   LK GG L V+S
Sbjct: 181 LVNIVKSCLPAKELRKKKHPAKQVFQAIRMEVNDELGTLEQALNQACSLLKEGGRLAVIS 240

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIP---SNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           FHS+EDR+VK     +  ++      +P    +   A F+ + KK ++  + ++  N R+
Sbjct: 241 FHSIEDRMVKTIL-KKHCEIEKPDPRLPIRFEDIQQADFRLVYKKPILAKEAELENNHRA 299

Query: 307 RSAKLR 312
            SAKLR
Sbjct: 300 HSAKLR 305


>gi|302344989|ref|YP_003813342.1| S-adenosyl-methyltransferase MraW [Prevotella melaninogenica ATCC
           25845]
 gi|302149179|gb|ADK95441.1| S-adenosyl-methyltransferase MraW [Prevotella melaninogenica ATCC
           25845]
          Length = 314

 Score =  170 bits (431), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 113/302 (37%), Positives = 174/302 (57%), Gaps = 13/302 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAV-SCGQ 75
           H+PVLL + I  LN     V +D TFG GG+SR   S     S++ + D+D  A  +   
Sbjct: 9   HIPVLLNESIEGLNLHANGVYVDVTFGGGGHSREILSRLAEDSHLYSFDQDADAEQNIDN 68

Query: 76  ETMRDYK-EQFSLFQATFSQLQDYVP--DKG-VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
             + D + ++F+  ++ F  L++++   D G +DG++ DLGVSS   D   RGFSF+   
Sbjct: 69  MGLSDEQVDRFTFVRSNFRYLKNWMRYYDVGYIDGLLADLGVSSHHFDDETRGFSFRFEA 128

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+  +GI+A+D++N  + + L  IL + GE KQ+ RIA AIVK R    ++TT D
Sbjct: 129 PLDMRMNKRAGITAADILNDYDEERLADILYLYGELKQSRRIASAIVKARGQKTYKTTND 188

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L + I+   +F +        + FQALRI VN+E++ L + L +A + L+ GG L V+++
Sbjct: 189 LLTTIEP--FFQRAREKKDMAKMFQALRIEVNHEMDALKEMLMAATELLRPGGRLSVITY 246

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDR+VK    S + +    +        P  F+ +  KV+  + ++   N RSRSAK
Sbjct: 247 HSLEDRMVKNIMKSGNIEGKVKQDFFGRIETP--FRLVNNKVITASNDEQERNPRSRSAK 304

Query: 311 LR 312
           LR
Sbjct: 305 LR 306


>gi|298491041|ref|YP_003721218.1| S-adenosyl-methyltransferase MraW ['Nostoc azollae' 0708]
 gi|298232959|gb|ADI64095.1| S-adenosyl-methyltransferase MraW ['Nostoc azollae' 0708]
          Length = 301

 Score =  170 bits (431), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 111/299 (37%), Positives = 174/299 (58%), Gaps = 30/299 (10%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           HVPVL ++VI  L  +P    LD T G GG+SR   +   +V   A+D+D  A+   +  
Sbjct: 18  HVPVLSQQVIGGLVVSPRGNYLDLTVGGGGHSRLILETAEDVKVTAVDQDEDALKAAKAN 77

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
           + ++ ++ +   + F+   D+ P+    G++ DLGVSS  +D  +RGFSF+ +  LDMRM
Sbjct: 78  LAEFGDRVNFIHSNFANY-DFPPNT-YHGILADLGVSSYHLDNPERGFSFRNTANLDMRM 135

Query: 138 SCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
           +    ++A D++N  +  +L  I    GEE+ + RIA  IV++R   PF TT +L+++I 
Sbjct: 136 NQQQFLTAGDIINNWDEGELADIFFKYGEERLSRRIARRIVEKR---PFHTTTELANVIA 192

Query: 197 KTV---YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
            +V   Y  +  R+HPATR FQALRI VN+E++ L   +  A  +L  GG + ++SFHSL
Sbjct: 193 YSVPPKY--RYGRLHPATRVFQALRIVVNDELKVLETLIDKAPHSLVPGGRIAIISFHSL 250

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           EDRLVK            +R++       ++ Q +TKK ++ T+ ++  N RSRSAKLR
Sbjct: 251 EDRLVKH----------GLRNL-------SLLQVLTKKPILGTESEITENLRSRSAKLR 292


>gi|289810554|ref|ZP_06541183.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 231

 Score =  170 bits (431), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 93/222 (41%), Positives = 139/222 (62%), Gaps = 12/222 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN  P  + +D TFG GG+SR    ++G    ++A+DRDP A++  Q 
Sbjct: 7   HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAQ- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           T+ D +  FS+    FS L DYV ++     +DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 66  TINDPR--FSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G SA++ +  A   D+  +L   GEE+ A RIAHAIV+R +  P   T++L
Sbjct: 124 LDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIAHAIVERNREQPMTRTKEL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLR 233
           + ++       K+   HPATR+FQA+RI+VN+E+EE+ Q  +
Sbjct: 184 AEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQATK 224


>gi|189485180|ref|YP_001956121.1| SAM-dependent methyltransferase [uncultured Termite group 1
           bacterium phylotype Rs-D17]
 gi|263504473|sp|B1GZH8|RSMH_UNCTG RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|170287139|dbj|BAG13660.1| SAM-dependent methyltransferase [uncultured Termite group 1
           bacterium phylotype Rs-D17]
          Length = 291

 Score =  170 bits (431), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 110/304 (36%), Positives = 166/304 (54%), Gaps = 23/304 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           H+PV+  +    L   PG + +D TFG GG++        ++  +A D D  +     E 
Sbjct: 3   HIPVMPLETSRYLIGKPGGLYVDCTFGGGGHALYLLDKFKDIKIVAFDWDEDSSKRFIER 62

Query: 78  MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
            +++  + +  +  F  ++  +       VDG++ D+GVSS Q    DRGFSF  SG LD
Sbjct: 63  EKEFSGRVTFIRDNFKNVKKALSALNISKVDGILADIGVSSKQFGDLDRGFSFN-SGTLD 121

Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM   +G  A +VVN  + +DL  I    GEE+++ +IA AI+ RR+     T  +L +
Sbjct: 122 MRMDKRNGFEAKEVVNSYSYEDLADIFYKYGEERKSRQIASAILLRRKRGIINTASELQT 181

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           +I          RI+PAT+ FQALRIFVN+E+E LA  L  A + L AGG  +++SFHSL
Sbjct: 182 VICSVK--RPEGRINPATKVFQALRIFVNSELENLAVLLSDAPELLNAGGRTVIISFHSL 239

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           EDR+VK+ F                N+   +++ +TKKVV   +E+V  N  SRSA++RA
Sbjct: 240 EDRIVKQNF--------------KRNSECGIYKILTKKVVTALKEEVKINPGSRSARIRA 285

Query: 314 GMRT 317
             +T
Sbjct: 286 AEKT 289


>gi|258423777|ref|ZP_05686663.1| methylase MraW [Staphylococcus aureus A9635]
 gi|257846009|gb|EEV70037.1| methylase MraW [Staphylococcus aureus A9635]
          Length = 311

 Score =  170 bits (431), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 104/306 (33%), Positives = 165/306 (53%), Gaps = 13/306 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+ V+L + I  LN     V +D T G  G++       ++   +IA+D+D  A+   +E
Sbjct: 4   HISVMLNETIDYLNVKENGVYIDCTLGGAGHALYLLNQLNDDGRLIAIDQDQTAIDNAKE 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++D+  + +   + F +L   + D   + VDG+ +DLGVSS Q+D  +RGFS+     L
Sbjct: 64  VLKDHLHKVTFVHSNFRELTQILKDLNIEKVDGIYYDLGVSSPQLDIPERGFSYHHDATL 123

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     ++A ++VN  + + L +I    GEEK + +IA  I   R+  P  TT +L 
Sbjct: 124 DMRMDQTQELTAYEIVNNWSYEALVKIFYRYGEEKFSKQIARRIEAHREQQPITTTLELV 183

Query: 193 SLIQKTVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
            +I++ +  +K  R   HPA R FQALRI VN+E+      +  A + +K  G + V++F
Sbjct: 184 DIIKEGIP-AKARRKGGHPAKRVFQALRIAVNDELSAFEDSIEQAIELVKVEGRISVITF 242

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           HSLEDRL K+ F          R +  IP    P + + + +K +  T+ED+  N R+RS
Sbjct: 243 HSLEDRLCKQVFQEYEKGPEVPRGLPVIPEAYTPKL-KRVNRKPITATEEDLDDNNRARS 301

Query: 309 AKLRAG 314
           AKLR  
Sbjct: 302 AKLRVA 307


>gi|329117643|ref|ZP_08246360.1| S-adenosyl-methyltransferase MraW [Streptococcus parauberis NCFD
           2020]
 gi|326908048|gb|EGE54962.1| S-adenosyl-methyltransferase MraW [Streptococcus parauberis NCFD
           2020]
          Length = 316

 Score =  170 bits (430), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 108/309 (34%), Positives = 172/309 (55%), Gaps = 14/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQE 76
           H+ VLL + + +LN  P  + +DAT G  G+S     ++  N  +   D+D  A+   Q 
Sbjct: 7   HITVLLNETVDMLNVKPDGIYVDATLGGAGHSAYLLSQLNENGHLYCFDQDQKAIDNAQV 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            ++ +  K Q +  +  F  L+  +   GV   DG+++DLGVSS Q+D  +RGFS+++  
Sbjct: 67  FLKPFIDKGQVTFIKDNFRNLKSRLASLGVTEIDGILYDLGVSSPQLDERERGFSYRQDA 126

Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM     ++A  VVN     DL RI    GE+K + +IA  I + R+  P +TT +
Sbjct: 127 PLDMRMDTEAELTAYQVVNHYAFNDLVRIFFRYGEDKFSKQIARKIEQAREIKPIETTAE 186

Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L+ LI K+   +K    + HPA + FQA+RI VN+E+    + ++ A   L   G + V+
Sbjct: 187 LAELI-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAAEESIQQAMDILALDGRISVI 245

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F   S   V     +IP +  P  F+ +++K ++P+ E++  N R+ 
Sbjct: 246 TFHSLEDRLTKQLFKEASTVDVPKNIPIIPEHLQPK-FELVSRKPILPSLEELEANNRAH 304

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 305 SAKLRVARK 313


>gi|70726737|ref|YP_253651.1| S-adenosyl-methyltransferase MraW [Staphylococcus haemolyticus
           JCSC1435]
 gi|88909220|sp|Q4L5N0|RSMH_STAHJ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|68447461|dbj|BAE05045.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 311

 Score =  170 bits (430), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 103/305 (33%), Positives = 165/305 (54%), Gaps = 11/305 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+ V+L + I  L+     + +D T G  G++       ++   +IA+D+D  A+   +E
Sbjct: 4   HISVMLNETIDYLDIKEDGIYVDCTLGGAGHALYLLNQLNDDGRLIAIDQDTTALDNAKE 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++D+  + +   + F +L D + +   + VDG+ +DLGVSS Q+D  +RGFS+     L
Sbjct: 64  VLKDHLHKVTFVHSNFRELTDILKNLNIEKVDGIYYDLGVSSPQLDVPERGFSYHHDAKL 123

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     +SA +VVNQ   + L +I    GEEK + +IA  I   R+  P +TT +L 
Sbjct: 124 DMRMDQTQQLSAYEVVNQWPYEALVKIFYRYGEEKFSKQIARRIETHREHQPIETTLELV 183

Query: 193 SLIQKTVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
            +I++ +  +K  R   HPA R FQA+RI VN+E+      +  A + +K GG + V++F
Sbjct: 184 DIIKEGIP-AKARRKGGHPAKRVFQAIRIAVNDELSAFEDSIEQAIELVKVGGRISVITF 242

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDRL K+ F          R + I   A+    + + +K +  T  D+  N R+RSA
Sbjct: 243 HSLEDRLCKQMFQEYEKGPDVPRGLPIIPEAYTPKLKRVNRKPITATDTDLDENNRARSA 302

Query: 310 KLRAG 314
           KLR  
Sbjct: 303 KLRVA 307


>gi|256384076|gb|ACU78646.1| S-adenosyl-methyltransferase MraW [Mycoplasma mycoides subsp. capri
           str. GM12]
 gi|256384908|gb|ACU79477.1| S-adenosyl-methyltransferase MraW [Mycoplasma mycoides subsp. capri
           str. GM12]
 gi|296455289|gb|ADH21524.1| S-adenosyl-methyltransferase MraW [synthetic Mycoplasma mycoides
           JCVI-syn1.0]
          Length = 308

 Score =  170 bits (430), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 107/303 (35%), Positives = 165/303 (54%), Gaps = 15/303 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+PVLL++ I  LN  P  + +D T G  G+S    K  +    + A+D+D  A+   +E
Sbjct: 4   HIPVLLKESIEYLNIKPDGIYVDCTLGRAGHSSEILKKLNQKGFLYAIDQDQIAIDQAKE 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +      F L Q  FS L   +       VDG+++DLGVSS QID   RGFS++  GPL
Sbjct: 64  KLEQINNNFLLIQGNFSNLSALLAINHVFNVDGILYDLGVSSPQIDIASRGFSYKMDGPL 123

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM   S ++A  V+N  +   ++ IL   GEE  +  I+  IV+ R   P  +T +L 
Sbjct: 124 DMRMDLNSTLTAHQVINTYSESQISEILFKYGEESFSKSISKKIVESR---PINSTLELV 180

Query: 193 SLIQKTVYFSK--NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
            +I K+V   K    + HPA ++FQALRI++NNE+  L   L+ A   L +   + V++F
Sbjct: 181 EII-KSVLPQKVLKQKKHPAKKTFQALRIYINNELIALENSLKQALDLLNSKARICVITF 239

Query: 251 HSLEDRLVKKFFASRSGKVMA-VRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRS 308
           HSLE+++VK  F + +      +   +P  A+  + F+ + KK + P+  ++  N RS S
Sbjct: 240 HSLEEKIVKNIFNNSTNYYQEQLLSNLPIKANLNSKFKLVIKKPIKPSLLELEQNHRSHS 299

Query: 309 AKL 311
           AKL
Sbjct: 300 AKL 302


>gi|302332784|gb|ADL22977.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus JKD6159]
          Length = 311

 Score =  170 bits (430), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 100/304 (32%), Positives = 163/304 (53%), Gaps = 9/304 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+ V+L + I  LN     V +D T G  G++       ++   +IA+D+D  A+   +E
Sbjct: 4   HISVMLNETIDYLNVKENGVYIDCTLGGAGHALYLLNQLNDDGRLIAIDQDQAAIDNAKE 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++D+  + +   + F +L   + D   + VDG+ +DLGVSS Q+D  +RGFS+     L
Sbjct: 64  VLKDHLHKVTFVHSNFRELTQILKDLNIEKVDGIYYDLGVSSPQLDIPERGFSYHHDATL 123

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     ++A ++VN  + + L +I    GEEK + +IA  I   R+  P  TT +L 
Sbjct: 124 DMRMDQTQELTAYEIVNNWSYEALVKIFYRYGEEKFSKQIARRIEAHREQQPITTTLELV 183

Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I++ +   ++    HPA R FQALRI VN+E+      +  A + +K  G + V++FH
Sbjct: 184 DIIKEGIPAKARRKGGHPAKRVFQALRIAVNDELSAFEDSIEQAIELVKVDGRISVITFH 243

Query: 252 SLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDRL K+ F          R + +   A+    + + +K +  T+ED+  N R+RSAK
Sbjct: 244 SLEDRLCKQVFQEYEKGPEVPRGLPVVPEAYTPKLKRVNRKPITATEEDLDDNNRARSAK 303

Query: 311 LRAG 314
           LR  
Sbjct: 304 LRVA 307


>gi|303235618|ref|ZP_07322225.1| S-adenosyl-methyltransferase MraW [Prevotella disiens FB035-09AN]
 gi|302484065|gb|EFL47053.1| S-adenosyl-methyltransferase MraW [Prevotella disiens FB035-09AN]
          Length = 310

 Score =  170 bits (430), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 112/301 (37%), Positives = 167/301 (55%), Gaps = 12/301 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           HVPVLL++ I  LN  P  V +D TFG GG+S+      S   ++ + D+D  A    + 
Sbjct: 9   HVPVLLKESIDGLNINPDGVYVDVTFGGGGHSKEILSRLSKKGHLYSFDQDADAEQNIKG 68

Query: 77  TMRDYK-EQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                K E F+  ++ F  L++++   GV   DG++ DLGVSS   D  +RGFSF+   P
Sbjct: 69  INNIEKLENFTFVRSNFRYLKNWLRYYGVEQIDGLLGDLGVSSHHFDDEERGFSFRFDAP 128

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+  +G +A+D++ Q   +DL  +  + GE K + +IA AIV  R++ P  TT+D 
Sbjct: 129 LDMRMNKRAGKTAADILLQYEEEDLANMFYLYGELKNSRKIAAAIVNSRKTKPILTTKDF 188

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            S+++    F +        + FQALRI VN E+  L + L  A + LK  G L V+++H
Sbjct: 189 QSVVEPL--FKREREKKEMAKLFQALRIEVNQEMAALKEMLIGASEVLKPNGRLSVITYH 246

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+VK    + + +    +        P  F+ I  KV+VP+Q +   N RSRSAKL
Sbjct: 247 SLEDRIVKNIMKTGNIEGKVEQDFFGKINSP--FKLINNKVIVPSQSEQKENPRSRSAKL 304

Query: 312 R 312
           R
Sbjct: 305 R 305


>gi|328948458|ref|YP_004365795.1| ribosomal RNA small subunit methyltransferase H [Treponema
           succinifaciens DSM 2489]
 gi|328448782|gb|AEB14498.1| Ribosomal RNA small subunit methyltransferase H [Treponema
           succinifaciens DSM 2489]
          Length = 340

 Score =  170 bits (430), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 104/305 (34%), Positives = 169/305 (55%), Gaps = 13/305 (4%)

Query: 20  HVPVLLEKVIALLNP-----APGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVS 72
           H PVLL + +  L+P          ++D+T G GG+S +F K      ++ LD D    +
Sbjct: 18  HTPVLLNECLKFLSPIGEPFEKDAFMIDSTLGEGGHSFNFLKKFPTLKILGLDADSVIQA 77

Query: 73  CGQETMRDYKEQFSLFQATFSQLQ-DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
             +E + ++ E+   +   F+    +Y  ++  D ++FDLG+S    +   RGFSF+   
Sbjct: 78  RAKERLSEFGERMKFYNGWFNDFYCNYSEERKPDLILFDLGISVFHYEKSGRGFSFRHDE 137

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMR++  +  SA+D+VN+    +L  ++ +  +EK + RIA AIV  R+S    +T+ 
Sbjct: 138 ELDMRLNADTKESATDIVNEMPEDELANMIYLYSDEKYSRRIASAIVSARKSQKIVSTKA 197

Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I   V    K   IHPATR+FQALRI VN+E++ L + + +A   L  GG + V++
Sbjct: 198 LADIIFNAVPSKYKYGNIHPATRTFQALRILVNSELKRLPEAIHAAFNVLAPGGKIGVIT 257

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           FHSLEDR+VK +F +   + +  R          P   + +T+K V P++E++  N  SR
Sbjct: 258 FHSLEDRIVKNYFRNLGKQCVCPREFPECVCGGTPCA-EILTRKPVEPSEEEIKANSPSR 316

Query: 308 SAKLR 312
           SAKLR
Sbjct: 317 SAKLR 321


>gi|301063241|ref|ZP_07203790.1| S-adenosyl-methyltransferase MraW [delta proteobacterium NaphS2]
 gi|300442669|gb|EFK06885.1| S-adenosyl-methyltransferase MraW [delta proteobacterium NaphS2]
          Length = 341

 Score =  170 bits (430), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 107/309 (34%), Positives = 174/309 (56%), Gaps = 16/309 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76
           HVPVLL++ +  LN  P  + +D T G+GG+S    S     S+++ LD+DP A+   ++
Sbjct: 34  HVPVLLQEAVRYLNLKPEGIYVDGTVGSGGHSMEILSHLPENSSLVCLDQDPDAIRLSRK 93

Query: 77  TMR-DYKEQFSLFQATFSQL----QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +R D + QF    A F+ L    QD   ++ +DG++ DLG+SS QI+   RGFSF +  
Sbjct: 94  RLRSDNRVQF--IHANFADLGRVMQDLAINR-IDGILLDLGMSSYQIEKSGRGFSFSREE 150

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+     +  D++N  +++ L  +L   GEE++   +A AIV+ R+    +T   
Sbjct: 151 PLDMRMNPDHKPTGMDLINSLSLESLQALLREYGEEQKFKTLARAIVRARERETIKTASQ 210

Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I++    S +  + HPAT++FQA+RI +N E+E L   L+     +  GG L+V+S
Sbjct: 211 LAHIIEEATPKSHRPWKRHPATKTFQAVRIAINKEMESLETFLQEIPSLMAVGGRLVVIS 270

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNA--HPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +HSLEDR +K+       K        P  A     +F+ + K+ + P + ++ FN R+R
Sbjct: 271 YHSLEDRQIKRAMVQWE-KTCTCPPDFPVCACQKTRIFKRVFKRGLKPDEREIHFNPRAR 329

Query: 308 SAKLRAGMR 316
           SA +R   R
Sbjct: 330 SAIMRVAER 338


>gi|261855063|ref|YP_003262346.1| S-adenosyl-methyltransferase MraW [Halothiobacillus neapolitanus
           c2]
 gi|261835532|gb|ACX95299.1| S-adenosyl-methyltransferase MraW [Halothiobacillus neapolitanus
           c2]
          Length = 317

 Score =  170 bits (430), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 107/255 (41%), Positives = 152/255 (59%), Gaps = 10/255 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H  VLL + +  L      V LDATFG GG+S +     +N   + A DRD  A++ G E
Sbjct: 17  HETVLLNEAVEALAVRADGVYLDATFGRGGHSAAILAKLNNHGRLFATDRDLRALAAG-E 75

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            +     +F +  A FS    ++   G    VDGV+FDLGVSS QID  +RGFSFQ++GP
Sbjct: 76  ALASKDARFQIHHAAFSTAAQWLASMGLQGKVDGVLFDLGVSSPQIDEAERGFSFQQNGP 135

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+  +G +A++ + +A  +++  +L  LG+EK + RIA  IV+ R + P  TT DL
Sbjct: 136 LDMRMNQHAGETAAEWLAEAEEEEIANVLYRLGDEKFSRRIARRIVETRAAQPLATTFDL 195

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
              I +     ++ R HPATRSFQA+R+ +N E++E++  L      L  GG L+V+SFH
Sbjct: 196 VRCIVEATP-RRDPRKHPATRSFQAIRLHINRELDEISAALSQVVDLLSIGGRLVVISFH 254

Query: 252 SLEDRLVKKFFASRS 266
           SLEDR+VK F    S
Sbjct: 255 SLEDRIVKNFIRDES 269


>gi|289551038|ref|YP_003471942.1| S-adenosyl-methyltransferase MraW [Staphylococcus lugdunensis
           HKU09-01]
 gi|315658534|ref|ZP_07911406.1| S-adenosyl-methyltransferase MraW [Staphylococcus lugdunensis
           M23590]
 gi|289180570|gb|ADC87815.1| S-adenosyl-methyltransferase MraW [Staphylococcus lugdunensis
           HKU09-01]
 gi|315496863|gb|EFU85186.1| S-adenosyl-methyltransferase MraW [Staphylococcus lugdunensis
           M23590]
          Length = 311

 Score =  170 bits (430), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 105/306 (34%), Positives = 165/306 (53%), Gaps = 13/306 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           HV V+L + I  LN  P  V +D T G  G++       ++   +IA+D+D  A+   +E
Sbjct: 4   HVSVMLNETIDYLNIKPDGVYVDCTLGGAGHALYLLNQLNDEGHLIAIDQDTTAIDNAKE 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++ +  + +     F +L   + +   + VDG+ +DLGVSS Q+D  +RGFS+     L
Sbjct: 64  VLKAHLHKVTFVHNNFRELTHILKELNIEKVDGIYYDLGVSSPQLDVPERGFSYHHDAKL 123

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     +SA +VVN+ + + L +I    GEEK + +IA  I   R+  P +TT  L 
Sbjct: 124 DMRMDRTQTLSAYEVVNEWSYEALVKIFYRYGEEKFSKQIARRIEAHRELQPIETTLQLV 183

Query: 193 SLIQKTVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
            +I++ +  +K  R   HPA R FQA+RI VN+E+      +  A + +K  G + V++F
Sbjct: 184 DVIKEGIP-AKARRKGGHPAKRVFQAIRIAVNDELSAFEDSIEQAIELVKVNGRISVITF 242

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           HSLEDRL K+ F          R +  IP    P + + + +K +  T+ED+  N R+RS
Sbjct: 243 HSLEDRLCKQIFQEYEKGPEVPRGLPIIPEEYTPKL-KRVNRKPITATEEDLNQNNRARS 301

Query: 309 AKLRAG 314
           AKLR  
Sbjct: 302 AKLRVA 307


>gi|270295456|ref|ZP_06201657.1| methylase MraW [Bacteroides sp. D20]
 gi|317478454|ref|ZP_07937614.1| MraW methylase [Bacteroides sp. 4_1_36]
 gi|270274703|gb|EFA20564.1| methylase MraW [Bacteroides sp. D20]
 gi|316905343|gb|EFV27137.1| MraW methylase [Bacteroides sp. 4_1_36]
          Length = 306

 Score =  170 bits (430), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 108/306 (35%), Positives = 167/306 (54%), Gaps = 16/306 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76
           H+PVLL   +  +N  P    +D TFG GG+SR   S  + G  +++ D+D  A     E
Sbjct: 8   HIPVLLMPSVDAMNIRPDGTYVDVTFGGGGHSREILSRLEDGGRLLSFDQDEDA-----E 62

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                   F+  ++ F  L +++   G   VD ++ DLGVSS   D  +RGFSF+  G L
Sbjct: 63  RNIVNNPHFTFVRSNFRYLHNFLRYHGIEKVDAILADLGVSSHHFDDSERGFSFRFDGAL 122

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  +G++A+D+VN    + L  I  + GE K + ++A  IVK R +    T  +  
Sbjct: 123 DMRMNKRAGLTAADIVNTYEEEKLADIFYLYGELKNSRKLASVIVKARATQRIATIGEFL 182

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +++    F +        + FQALRI VN E+E L + L +A +ALK GG L+V+++HS
Sbjct: 183 EIVKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLYAATEALKPGGRLVVITYHS 240

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK    + + +  A +    +   P  F+ +  KV+VP +E++  N RSRSAKLR
Sbjct: 241 LEDRMVKNIMKTGNVEGKAEKDFFGNVLTP--FRLVNNKVIVPDEEEIERNPRSRSAKLR 298

Query: 313 AGMRTV 318
              R +
Sbjct: 299 IAERVM 304


>gi|259047019|ref|ZP_05737420.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Granulicatella adiacens ATCC 49175]
 gi|259036338|gb|EEW37593.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Granulicatella adiacens ATCC 49175]
          Length = 314

 Score =  170 bits (430), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 105/304 (34%), Positives = 173/304 (56%), Gaps = 11/304 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77
           H+ VLL + +  L+  P  + +D T G  G+S+         ++   D+D  A+   +  
Sbjct: 4   HITVLLHETVDALSIKPDGIYVDCTLGGAGHSQYLLSQLTTGHLYCFDQDMQAIQHAKAR 63

Query: 78  M-RDYKE-QFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + ++  E + +   A F QL+  +   GV   DG+++DLGVSS Q+D  +RGFS+ ++  
Sbjct: 64  LAKEVSEGKVTFIHANFRQLKIELGKLGVSKVDGILYDLGVSSPQLDQIERGFSYHQNAK 123

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S  ++A ++VN+ +  +L RI    GEEK + +IA  I + R     +TT +L
Sbjct: 124 LDMRMDQSAPLTAEEIVNEWSYDELVRIFYRYGEEKFSKQIARNIERIRAQHRIETTGEL 183

Query: 192 SSLIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+ ++  +   +  HPA R FQA+RI VN+E+  +   L  A + +  GG + V+SF
Sbjct: 184 VDIIRDSIPAAARRKGGHPAKRIFQAIRIAVNDELAAIEDSLEQAFEVVSVGGRISVISF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+VK  F  +S    A +++  +P+    A FQ + KK ++P+ E++  N RS+S
Sbjct: 244 HSLEDRIVKTMFKQQSTVEKAPKNLPILPTEEEKAPFQLVNKKPILPSLEEITENSRSQS 303

Query: 309 AKLR 312
           AKLR
Sbjct: 304 AKLR 307


>gi|167754606|ref|ZP_02426733.1| hypothetical protein CLORAM_00108 [Clostridium ramosum DSM 1402]
 gi|237733759|ref|ZP_04564240.1| S-adenosyl-methyltransferase mraW [Mollicutes bacterium D7]
 gi|167705438|gb|EDS20017.1| hypothetical protein CLORAM_00108 [Clostridium ramosum DSM 1402]
 gi|229383097|gb|EEO33188.1| S-adenosyl-methyltransferase mraW [Coprobacillus sp. D7]
          Length = 314

 Score =  170 bits (430), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 107/317 (33%), Positives = 172/317 (54%), Gaps = 14/317 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76
           DHV VLL++ +  LN     + +D T G  G+S +  K     ++   D+D  A+   + 
Sbjct: 3   DHVTVLLKEAVEGLNIKADGIYVDCTLGGAGHSCAILKQLTTGHLYCFDQDQTAIEAARL 62

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +      +++  + F  +++ + + GV   DG++FDLGVSS Q D G RGFS+     L
Sbjct: 63  RLDAVGNNYTIIYSNFVNIKEKLNELGVTRVDGILFDLGVSSPQFDTGSRGFSYNYDARL 122

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  S  + A  +VN    + +  IL    +EK A +IA  I ++RQ  P +TT +L 
Sbjct: 123 DMRMDTSNPLDAYAIVNTWPYERIVEILYKYADEKFAKQIARKIEQKRQIRPIETTFELV 182

Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  +  F++    HPA R+FQALRI VN+E+    + L+ +   L  GG + V++FH
Sbjct: 183 DIIKDAIPAFARRKGGHPAKRTFQALRIAVNDELNVFDRALKDSLDLLNVGGRISVITFH 242

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLED++ K  F   ++   V     +IP    P  F+ I KK +V ++E++  N R+ SA
Sbjct: 243 SLEDKICKYTFNDVTKLKDVPPGLPVIPDYLQPR-FKLINKKAMVASKEELEVNHRAHSA 301

Query: 310 KLRAGMRTVERSIEDDS 326
           KL    R +ER  E+++
Sbjct: 302 KL----RIIEREFENET 314


>gi|198274315|ref|ZP_03206847.1| hypothetical protein BACPLE_00459 [Bacteroides plebeius DSM 17135]
 gi|198272805|gb|EDY97074.1| hypothetical protein BACPLE_00459 [Bacteroides plebeius DSM 17135]
          Length = 304

 Score =  170 bits (430), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 105/300 (35%), Positives = 172/300 (57%), Gaps = 16/300 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H+PVLL + I  ++   G   +D TFG GG+SR   +     S + + D+D       + 
Sbjct: 9   HIPVLLHESIEGMHLQSGGTYVDVTFGGGGHSREILRNMDDKSRLFSFDQD---ADAERN 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + D  ++F+  ++ F  L +++   GV   D ++ DLGVSS   D  +RGFSF+  G L
Sbjct: 66  IIND--KRFTFVRSNFRYLHNFLRYYGVEEVDAILADLGVSSHHFDDSERGFSFRFDGKL 123

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  +GI+A+D++N    + L  +  + GE K + ++A  +VK R   P +T  +  
Sbjct: 124 DMRMNKRAGITAADIINTYEEEKLADLFYLYGELKNSRKLAATLVKARAQKPVETIGEFI 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            ++ K +Y  +  +   A + FQALRI VN E+E L + L +A +ALK GG L+V+++HS
Sbjct: 184 EIV-KPLYGREREKKEMA-KVFQALRIEVNQEMEALKEMLYAATEALKPGGRLVVITYHS 241

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK    + + +  A +    +   P  F+ I  KV++P+++++  N RSRSAKLR
Sbjct: 242 LEDRMVKNIMKTGNIEGKAKQDFFGNVETP--FKLINNKVIIPSEDEIQRNPRSRSAKLR 299


>gi|329728859|gb|EGG65280.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 311

 Score =  169 bits (429), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 103/306 (33%), Positives = 165/306 (53%), Gaps = 13/306 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+ V+L + I  LN     V +D T G  G++       ++   ++A+D+D  A+   +E
Sbjct: 4   HISVMLNETIDYLNVKENGVYIDCTLGGAGHALYLLNQLNDDGRLLAIDQDQTAIDNAKE 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++D+  + +   + F +L   + D   + VDG+ +DLGVSS Q+D  +RGFS+     L
Sbjct: 64  VLKDHLHKVTFVHSNFRELTQILKDLNIEKVDGIYYDLGVSSPQLDIPERGFSYHHDATL 123

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     ++A ++VN  + + L +I    GEEK + +IA  I   R+  P  TT +L 
Sbjct: 124 DMRMDQTQELTAYEIVNNWSYEALVKIFYRYGEEKFSKQIARRIEAHREQQPITTTLELV 183

Query: 193 SLIQKTVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
            +I++ +  +K  R   HPA R FQALRI VN+E+      +  A + +K  G + V++F
Sbjct: 184 DIIKEGIP-AKARRKGGHPAKRVFQALRIAVNDELSAFEDSIEQAIELVKVDGRISVITF 242

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           HSLEDRL K+ F          R +  IP    P + + + +K +  T+ED+  N R+RS
Sbjct: 243 HSLEDRLCKQVFQEYEKGPEVPRGLPVIPEAYTPKL-KRVNRKPITATEEDLDDNNRARS 301

Query: 309 AKLRAG 314
           AKLR  
Sbjct: 302 AKLRVA 307


>gi|119953105|ref|YP_945314.1| S-adenosyl-methyltransferase MraW [Borrelia turicatae 91E135]
 gi|263447569|sp|A1QZA2|RSMH_BORT9 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|119861876|gb|AAX17644.1| S-adenosyl-methyltransferase MraW [Borrelia turicatae 91E135]
          Length = 297

 Score =  169 bits (429), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 106/308 (34%), Positives = 169/308 (54%), Gaps = 24/308 (7%)

Query: 20  HVPVLLEKVIALL---NPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCG 74
           H+PVLLE++I LL   N + G V +D T G GG+S +  K     NVI +DRD   ++  
Sbjct: 6   HIPVLLEEIINLLEASNISDGFVFVDCTLGEGGHSSAVLKKYQNINVIGIDRDDVVLNRA 65

Query: 75  QETMRDYKEQFSLFQATFSQL-QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           +E++ ++K + S F   F     +Y     ++ ++ DLG+S        RGFSF +   L
Sbjct: 66  KESLIEFKGRVSYFNTWFDDFFSEYPLSSKINFILADLGISMFHYKMSGRGFSFFEDERL 125

Query: 134 DMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           DMR+     G+SA D++N  + K L  ++  L  E+ + RI  +I++ R+    +T ++L
Sbjct: 126 DMRLYPGAGGLSAYDIINTFDKKRLENLIYELSGERYSRRIVKSILEYRKIKKIETPREL 185

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             ++ K  Y     +I+PAT++FQALRI+VN+E+  L + L    ++L   G+L +V+FH
Sbjct: 186 QDIVSKA-YPRIKLKINPATKTFQALRIYVNDELFRLKRSLPLWVESLSNNGVLAIVTFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLED++VK+FF   S     +               +TKK ++P  E+  FN  SRSAKL
Sbjct: 245 SLEDKIVKEFFKGLSKDQYCI---------------LTKKPIMPRCEEKRFNSASRSAKL 289

Query: 312 RAGMRTVE 319
           R   +  E
Sbjct: 290 RVIKKLYE 297


>gi|160891413|ref|ZP_02072416.1| hypothetical protein BACUNI_03863 [Bacteroides uniformis ATCC 8492]
 gi|156858820|gb|EDO52251.1| hypothetical protein BACUNI_03863 [Bacteroides uniformis ATCC 8492]
          Length = 307

 Score =  169 bits (429), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 108/306 (35%), Positives = 167/306 (54%), Gaps = 16/306 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76
           H+PVLL   +  +N  P    +D TFG GG+SR   S  + G  +++ D+D  A     E
Sbjct: 9   HIPVLLMPSVDAMNIRPDGTYVDVTFGGGGHSREILSRLEDGGRLLSFDQDEDA-----E 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                   F+  ++ F  L +++   G   VD ++ DLGVSS   D  +RGFSF+  G L
Sbjct: 64  RNIVNNPHFTFVRSNFRYLHNFLRYHGIEKVDAILADLGVSSHHFDDSERGFSFRFDGAL 123

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  +G++A+D+VN    + L  I  + GE K + ++A  IVK R +    T  +  
Sbjct: 124 DMRMNKRAGLTAADIVNTYEEEKLADIFYLYGELKNSRKLASVIVKARATQRIATIGEFL 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +++    F +        + FQALRI VN E+E L + L +A +ALK GG L+V+++HS
Sbjct: 184 EIVKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLYAATEALKPGGRLVVITYHS 241

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK    + + +  A +    +   P  F+ +  KV+VP +E++  N RSRSAKLR
Sbjct: 242 LEDRMVKNIMKTGNVEGKAEKDFFGNVLTP--FRLVNNKVIVPDEEEIERNPRSRSAKLR 299

Query: 313 AGMRTV 318
              R +
Sbjct: 300 IAERVM 305


>gi|169839498|ref|ZP_02872686.1| S-adenosyl-methyltransferase MraW [candidate division TM7
           single-cell isolate TM7a]
          Length = 339

 Score =  169 bits (429), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 121/306 (39%), Positives = 165/306 (53%), Gaps = 27/306 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           HVPVLL   + L  P P +  LD T G GG++ +F       S+ + +DRD  A++   E
Sbjct: 18  HVPVLLSASLDLFKPQPKERYLDLTAGYGGHAEAFLNKTQSYSSAVLVDRDENAIA---E 74

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
             R      +L  A F      +   G   D ++ DLGVSS Q+D GDRGFSF   GPLD
Sbjct: 75  LGRFSALGATLINADFVSAAKQLVSVGEKFDVIMVDLGVSSPQLDNGDRGFSFMYDGPLD 134

Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQ--ASRIAHAIVKRRQSAPFQTTQDL 191
           MRM      SA+D+VN    + L  IL   GEE+   A RIA  I KRR   PF  T +L
Sbjct: 135 MRMDQRQKFSAADIVNSYPKQKLIEILVRYGEERLSFAKRIADEIYKRR---PFTKTSEL 191

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + +I + ++     +IHPATR+FQALRI VN E+ ++   L    + L +GG + ++SFH
Sbjct: 192 AKMIVE-IHRGGWQKIHPATRTFQALRIEVNQELAQIESLLPLLLQLLNSGGRVGIISFH 250

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDRLVK+FF   SG            +  +  + + KK +     D A+N RSRSAKL
Sbjct: 251 SLEDRLVKRFFKDNSGL-----------SFESELELLNKKPLDGATYD-AYNPRSRSAKL 298

Query: 312 RAGMRT 317
           R  ++ 
Sbjct: 299 RGALKN 304


>gi|260437306|ref|ZP_05791122.1| S-adenosyl-methyltransferase MraW [Butyrivibrio crossotus DSM 2876]
 gi|292810218|gb|EFF69423.1| S-adenosyl-methyltransferase MraW [Butyrivibrio crossotus DSM 2876]
          Length = 313

 Score =  169 bits (429), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 105/311 (33%), Positives = 168/311 (54%), Gaps = 14/311 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H  VLL + I  LN  P  + +D T G  G+S   C+  S    +I +D+D  A+     
Sbjct: 5   HKSVLLNECIENLNIKPDGIYVDGTLGGAGHSYHICERLSKKGRLIGIDQDEDAIRAATT 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSF-QKSGP 132
            +  +K++ ++ +  +S +++ +   G   VDG++ D+GVSS Q+D  +RGF++ ++  P
Sbjct: 65  RLEPFKDRVTIVKDNYSNIKNVLVSLGIDKVDGILLDIGVSSYQLDNAERGFTYKEEDAP 124

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM   SGI+A DVVN  +  +L R++   GEE+ A  IA  I   R  +   TT  L
Sbjct: 125 LDMRMDRQSGITAQDVVNDYSEMELFRVIRDYGEEQFAKNIAKHICIERNKSRITTTGRL 184

Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           + +I+  +    + N  HPA ++FQA+RI VN E+  L + + +    L   G L +++F
Sbjct: 185 TEIIKAAIPMKFRVNGGHPAKKTFQAIRIEVNRELYVLEESIDTMIDLLNDKGRLCIITF 244

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM---IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           HSLEDR+VK  F                +  N    V   IT+K +VPT E++  N+R++
Sbjct: 245 HSLEDRIVKNKFRDNVNTCTCPPDFPVCVCGNRPKGVI--ITRKPIVPTDEEIEINKRAK 302

Query: 308 SAKLRAGMRTV 318
           S+KLR   R +
Sbjct: 303 SSKLRVFERVI 313


>gi|33239648|ref|NP_874590.1| S-adenosylmethionine-dependent methyltransferase [Prochlorococcus
           marinus subsp. marinus str. CCMP1375]
 gi|42559452|sp|Q7VE18|RSMH_PROMA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|33237173|gb|AAP99242.1| Predicted S-adenosylmethionine-dependent methyltransferase
           [Prochlorococcus marinus subsp. marinus str. CCMP1375]
          Length = 305

 Score =  169 bits (429), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 116/305 (38%), Positives = 166/305 (54%), Gaps = 34/305 (11%)

Query: 20  HVPVLLEKVIALLNPAPGKVIL-----DATFGAGGYSRSFCK--MGSNVIALDRDPFAVS 72
           H PVL+ +V+  +   P ++++     DAT G GG+S    K     ++  LD+DP A+ 
Sbjct: 14  HTPVLVNQVLEAIAKLPSELLIKGKLIDATIGGGGHSALILKGFPSLHITGLDQDPSAID 73

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              + +  +  +  +  + F+   D+VP + V  V+ DLGVSS QID   RGFSF+ +GP
Sbjct: 74  AASKQLLHFGSRAEIISSNFA---DFVPQEEVAFVLADLGVSSPQIDEAKRGFSFRLNGP 130

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA--PFQTTQ 189
           LDMRM+   G+ A +++ +   K L  ++   GEEK + RIA  I K+  SA  P++ T 
Sbjct: 131 LDMRMNPKKGLKADELLEKTEEKALADLIYKYGEEKFSRRIARRI-KQDLSANGPYEGTS 189

Query: 190 DLSSLIQKTVYFSK--NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            L+  I    Y  K  N RIHPATR+FQALRI +NNE++ L   L+ A   L  GG+  V
Sbjct: 190 ALAYAIA-GCYPPKMRNGRIHPATRTFQALRIAINNELDALQHLLQKAPNWLLPGGVFAV 248

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +SFHSLEDRLVKK F +                     + IT+K +     +   N RSR
Sbjct: 249 ISFHSLEDRLVKKSFLTDE-----------------RLERITRKPIQADSNEKLNNPRSR 291

Query: 308 SAKLR 312
           SAKLR
Sbjct: 292 SAKLR 296


>gi|47230508|emb|CAF99701.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 437

 Score =  169 bits (429), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 131/385 (34%), Positives = 188/385 (48%), Gaps = 93/385 (24%)

Query: 20  HVPVLLEKVIALLNPAPGK----------VILDATFGAGGYSRSFCKMGSNV--IALDRD 67
           H PV+L++V+  L+  PG+          V+LD TFG GG++++   M   V  +ALDRD
Sbjct: 57  HTPVMLKEVLHYLDIQPGQGEGSRLSIFHVVLDMTFGGGGHTKAILSMVPEVKVLALDRD 116

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD-----KGVDGVVFDLGVSSMQIDCGD 122
           P A+S  ++  ++   Q +     FSQL   + D       VD V+ D G SSMQ+D  +
Sbjct: 117 PTAISLAEKLAKESSGQVTPLLGRFSQLDVLLSDLKVKPGSVDAVLLDAGCSSMQMDQAE 176

Query: 123 RGFSFQKSGPLDMRM----------------------SCSGI----------SASDVVNQ 150
           RGFS  K GPLDMRM                      S  G+          SA+DVVN 
Sbjct: 177 RGFSLSKDGPLDMRMDGESRISELSAFATVSKDMTSSSLIGLCFVRRYPEMPSAADVVNT 236

Query: 151 -ANVKDLTRILGILGEE-KQASRIAHA----------------------IVKRRQSAPFQ 186
             +        G+ G E  + +R +H                        VKR +  P Q
Sbjct: 237 PGSTGSCIHHHGLRGGEMGRENRFSHCGGTSHQPHHPDAAAGQRGGSGQTVKRLR--PQQ 294

Query: 187 TTQDLSSLIQKTVYFSKNNRI----HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           + +   SL    V +++ +R+    H AT++FQAL IFVN+E++EL  GLR+A +AL+ G
Sbjct: 295 SARRFRSL-PAAVAYARKDRLRRPAHAATKTFQALCIFVNDELKELHAGLRAAREALRPG 353

Query: 243 GLLIVVSFHSLEDRLVKKFFAS-----------RSGKVMAVRHMIPSNAHPAVFQSITKK 291
           G L V++FHSLEDRLVK+F              R GK    +    + A  A +  + +K
Sbjct: 354 GRLCVITFHSLEDRLVKRFLRGHDLAHSDQQLFRPGKRDLPKET--NTAESAHWLLLRRK 411

Query: 292 VVVPTQEDVAFNRRSRSAKLRAGMR 316
           V+ P ++DV  N R RSAKLRA +R
Sbjct: 412 VIAPERDDVRDNPRGRSAKLRAALR 436


>gi|325856519|ref|ZP_08172208.1| S-adenosyl-methyltransferase MraW [Prevotella denticola CRIS 18C-A]
 gi|325483488|gb|EGC86461.1| S-adenosyl-methyltransferase MraW [Prevotella denticola CRIS 18C-A]
          Length = 314

 Score =  169 bits (429), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 113/304 (37%), Positives = 174/304 (57%), Gaps = 17/304 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAV-SCGQ 75
           HVPVLL + I  LN   G + +D TFG GG+SR   S  + GS++ + D+D  A  + G+
Sbjct: 9   HVPVLLNESIEGLNLHAGGIYVDVTFGGGGHSREILSRLEAGSHLYSFDQDADAEQNIGR 68

Query: 76  ETMRDYK-EQFSLFQATFSQLQDY-----VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
             +   + ++F+  ++ F  L+++     VP   +DG++ DLGVSS   D   RGFSF+ 
Sbjct: 69  MGLSSEQVDRFTFIRSNFRYLKNWMRYYSVPH--IDGLLADLGVSSHHFDDETRGFSFRF 126

Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM+  +G++A+D++N+ + + L  IL + GE KQ+ RIA AIVK R+   ++TT
Sbjct: 127 EAPLDMRMNKRAGMTAADILNEYDEEHLADILYLYGELKQSRRIAAAIVKGREQKAYKTT 186

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            DL ++     +F +        + FQALRI VN E++ L + L +A   L  GG L V+
Sbjct: 187 NDLLAITDP--FFRRAREKKDMAKLFQALRIEVNYEMDALREMLLAAIGLLSPGGRLSVI 244

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           ++HSLEDR+VK    S + +    +        P  F+ +  KV+    ++   N RSRS
Sbjct: 245 TYHSLEDRMVKNVMKSGNIEGKVSQDFFGRIDTP--FRLVNSKVITANNDEQERNPRSRS 302

Query: 309 AKLR 312
           AKLR
Sbjct: 303 AKLR 306


>gi|297620593|ref|YP_003708730.1| S-adenosyl-methyltransferase [Waddlia chondrophila WSU 86-1044]
 gi|297375894|gb|ADI37724.1| S-adenosyl-methyltransferase [Waddlia chondrophila WSU 86-1044]
          Length = 306

 Score =  169 bits (429), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 110/302 (36%), Positives = 167/302 (55%), Gaps = 13/302 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCGQE 76
           H+ VLLE+V    +    K  +D T GAGG+S         +   + +D+DP A+   +E
Sbjct: 4   HLSVLLEEVAESFSDVDLKRFVDGTLGAGGHSAEILSAHPEIQRFLGIDQDPDALEIARE 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  + E+    +  FS L++++   G   VDG++ DLGVSSMQ D  +RGFS Q+ GPL
Sbjct: 64  RLSKWSEKVMFQRGNFSDLKEHLAQNGLEKVDGILLDLGVSSMQFDRPERGFSLQQDGPL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+    ++A+++VN     +L  +    GEEK+    A A+     + P   T +L 
Sbjct: 124 DMRMNPEEPLTAAEIVNTWPEAELGDLFKKYGEEKRWRAAARAVA---AARPISRTLELV 180

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            ++   +   +  +IHPAT  FQALR+ VN EIE + + +  A   L  GG L V+SFHS
Sbjct: 181 EVLTSVLGRPRKGKIHPATLIFQALRLAVNREIERIEEVIPQAIGCLNPGGRLAVISFHS 240

Query: 253 LEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           LEDR+VK+ F   +    + R +  +  +  P V   IT+K +VP + +V  N RSRS+K
Sbjct: 241 LEDRIVKRQFRYLADDKESTRGVGGVFISKEPVV-NLITRKPIVPGKAEVERNPRSRSSK 299

Query: 311 LR 312
           LR
Sbjct: 300 LR 301


>gi|300173578|ref|YP_003772744.1| S-adenosyl-methyltransferase MraW [Leuconostoc gasicomitatum LMG
           18811]
 gi|299887957|emb|CBL91925.1| S-adenosyl-methyltransferase MraW [Leuconostoc gasicomitatum LMG
           18811]
          Length = 313

 Score =  169 bits (429), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 109/308 (35%), Positives = 167/308 (54%), Gaps = 16/308 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCGQE 76
           +HV VLL++ +ALLN  P    +DAT G GG++    K   N I  + D+D  A+   +E
Sbjct: 5   EHVTVLLKEAVALLNVKPDGNYVDATLGGGGHTGEILKQLDNGILYSFDQDDTAIKYNEE 64

Query: 77  TMRDYKEQFS-----LFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQ 128
               Y  + +     L    F  L + + + GV   DGV++DLGVSS+Q D G RGFS+ 
Sbjct: 65  ---QYAAEIASGKLVLIHQNFRTLTEALAELGVTQVDGVLYDLGVSSVQFDDGQRGFSYN 121

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
               LDMRM     ++A  ++N+ +  D+ RIL   GE++   +IA  I   R++    T
Sbjct: 122 YDADLDMRMDQRQTLTAKTIINEWSFNDILRILSRYGEDRFPKQIARKIEHHRENGVINT 181

Query: 188 TQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T +L  +I++ +   ++    HPA R+FQALRI VN+E+  L   L  +   L  GG + 
Sbjct: 182 TFELVDIIKEAIPAPARRKGGHPAKRTFQALRIAVNDELGALEDSLTQSLDLLAPGGRIS 241

Query: 247 VVSFHSLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
            ++F SLEDRLVK+ F  + S   + V   +      A +  +T+K ++PT ++   N R
Sbjct: 242 AITFQSLEDRLVKQMFREKTSTPELPVGLPVLPGQFEADYTLLTRKPILPTNDETQTNHR 301

Query: 306 SRSAKLRA 313
           S+SAKLR 
Sbjct: 302 SQSAKLRG 309


>gi|294674965|ref|YP_003575581.1| S-adenosyl-methyltransferase MraW [Prevotella ruminicola 23]
 gi|294473982|gb|ADE83371.1| S-adenosyl-methyltransferase MraW [Prevotella ruminicola 23]
          Length = 304

 Score =  169 bits (429), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 111/300 (37%), Positives = 165/300 (55%), Gaps = 16/300 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HVPVLL + I  L    G + +D TFG GG+S+   +     +++ + D+DP      + 
Sbjct: 9   HVPVLLHESIDGLAIKSGGIYVDVTFGGGGHSKEILRRLDEKAHLYSFDQDP---DAEKN 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + D  ++F+  ++ F  L++++   GVD   G++ DLGVSS   D   RGFSF+   PL
Sbjct: 66  IVND--DRFTFVRSNFRYLKNWMRYYGVDHIDGLLADLGVSSHHFDDETRGFSFRFDAPL 123

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  +G +A++++N  + + L  I  I GE K A +IA  I K R     +TT DL 
Sbjct: 124 DMRMNKRAGTTAAEILNTYDEEQLADIFYIYGELKNARKIASIIAKTRNEKKIETTGDLM 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           S  +K   F +        + FQALRI VN+E++ L + L  A+  L  GG L V+++HS
Sbjct: 184 SATEKL--FQREREKKEMAKMFQALRIEVNHEMDALKEMLNGAKDLLGEGGRLSVITYHS 241

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK     ++G V             A F+ I  KV+VP+ E+   N RSRSAKLR
Sbjct: 242 LEDRIVKNMM--KAGNVEGKIKQDFFGRIEAPFRLINNKVIVPSDEEQQQNPRSRSAKLR 299


>gi|322386906|ref|ZP_08060530.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus cristatus ATCC 51100]
 gi|321269188|gb|EFX52124.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus cristatus ATCC 51100]
          Length = 316

 Score =  169 bits (429), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 109/312 (34%), Positives = 177/312 (56%), Gaps = 14/312 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGS--NVIALDRDPFAVSCGQE 76
           H+ VLL + I  L+     + +DAT G  G+S     K+G   ++ A D+D  A+   ++
Sbjct: 7   HITVLLHETIDQLDVRSDGIYVDATLGGAGHSEYLLSKLGDKGHLYAFDQDQTAIDNAKK 66

Query: 77  TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y E+   +  +  F  L+  + + GV   DG+ +DLGVSS Q+D  +RGFS+++  
Sbjct: 67  RLAPYIERGMVTFIKDNFRNLKTRLNEVGVEKIDGICYDLGVSSPQLDERERGFSYKQDA 126

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+  + ++A  VVNQ    DL RI    GE+K + +IA  I + R+  P +TT +
Sbjct: 127 PLDMRMNQEAALTAYQVVNQYPYNDLVRIFFKYGEDKFSKQIARKIEQAREIKPIETTTE 186

Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L+ +I K+   +K    + HPA + FQA+RI VN+E+    + ++ A   L  GG + V+
Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDLLAVGGRISVI 245

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F   S   V      IP +  P + + +++K ++P++E++  N R+ 
Sbjct: 246 TFHSLEDRLTKQLFKEASTVDVPKGLPFIPDDLQPKL-ELVSRKPILPSKEELEANNRAH 304

Query: 308 SAKLRAGMRTVE 319
           SAKLR   +  E
Sbjct: 305 SAKLRVARKVHE 316


>gi|229546836|ref|ZP_04435561.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX1322]
 gi|307290049|ref|ZP_07569973.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0411]
 gi|312901052|ref|ZP_07760343.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0470]
 gi|229308001|gb|EEN73988.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX1322]
 gi|306498891|gb|EFM68385.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0411]
 gi|311291878|gb|EFQ70434.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0470]
 gi|315029678|gb|EFT41610.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX4000]
          Length = 322

 Score =  169 bits (429), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 107/308 (34%), Positives = 170/308 (55%), Gaps = 19/308 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  V +D T G  G+S           ++ A D+D  A++  + 
Sbjct: 11  HYTVLLKETVDGLQVKPDGVYVDCTLGGAGHSEYLLTQLNEHGHLYAFDQDQKALAHAKT 70

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            ++ Y  K Q +  ++ F  +++ + + GV   DG+++DLGVSS Q+D  +RGFS+ +  
Sbjct: 71  RLQKYVDKGQVTFIKSNFRNIKEELAEHGVFHVDGILYDLGVSSPQLDEAERGFSYHQDA 130

Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM     ++A +VVN  +  +L +I    GEEK + +IA  I + R+  P +TT +
Sbjct: 131 PLDMRMDQDAPLTAREVVNTYSYSELVKIFFRYGEEKFSKQIAREIERVREKQPIETTGE 190

Query: 191 LSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I+  +   ++    HPA R FQA+RI VN+E+  + + L  A   L   G + V++
Sbjct: 191 LVEIIKTAIPAPARRKGGHPAKRIFQAIRIAVNDELGAVEESLEQAIDLLAKNGRISVIT 250

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPS-NAHPAVFQS----ITKKVVVPTQEDVAFNR 304
           FHSLEDR+VK  F   S     V+ + P     P  FQ     IT+K ++P+  +++ N 
Sbjct: 251 FHSLEDRIVKTMFKEYS----TVQDLPPGIPVVPEEFQPELKVITRKPILPSDSELSENN 306

Query: 305 RSRSAKLR 312
           RSRSAKLR
Sbjct: 307 RSRSAKLR 314


>gi|29375571|ref|NP_814725.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis V583]
 gi|29343032|gb|AAO80795.1| conserved hypothetical protein TIGR00006 [Enterococcus faecalis
           V583]
          Length = 319

 Score =  169 bits (429), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 108/316 (34%), Positives = 172/316 (54%), Gaps = 19/316 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  V +D T G  G+S           ++ A D+D  A++  + 
Sbjct: 8   HYTVLLKETVDGLQVKPDGVYVDCTLGGAGHSEYLLTQLNEHGHLYAFDQDQKALAHAKT 67

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            ++ Y  K Q +  ++ F  +++ + + GV   DG+++DLGVSS Q+D  +RGFS+ +  
Sbjct: 68  RLQKYVDKGQVTFIKSNFRNIKEELAEHGVFHVDGILYDLGVSSPQLDEAERGFSYHQDA 127

Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM     ++A +VVN  +  +L +I    GEEK + +IA  I + R+  P +TT +
Sbjct: 128 PLDMRMDQDAPLTAREVVNTYSYSELVKIFFRYGEEKFSKQIAREIERVREKQPIETTGE 187

Query: 191 LSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I+  +   ++    HPA R FQA+RI VN+E+  + + L  A   L   G + V++
Sbjct: 188 LVEIIKTAIPAPARRKGGHPAKRIFQAIRIAVNDELGAVEESLEQAIDLLAKNGRISVIT 247

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPS-NAHPAVFQS----ITKKVVVPTQEDVAFNR 304
           FHSLEDR+VK  F   S     V+ + P     P  FQ     IT+K ++P+  +++ N 
Sbjct: 248 FHSLEDRIVKTMFKEYS----TVQDLPPGIPVVPEEFQPELKVITRKPILPSDSELSENN 303

Query: 305 RSRSAKLRAGMRTVER 320
           RSRSAKLR   +   R
Sbjct: 304 RSRSAKLRIAEKIKSR 319


>gi|325123733|gb|ADY83256.1| S-adenosylmethionine methyltransferase [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 285

 Score =  169 bits (429), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 110/287 (38%), Positives = 165/287 (57%), Gaps = 17/287 (5%)

Query: 39  VILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95
           + +DATFG GG++R    K+  N  V A D+DP A+       ++   +F++  A+F+ +
Sbjct: 1   MYIDATFGRGGHTRLLLSKLDENARVYAFDKDPQALEVASALAQE-DPRFTIIHASFADI 59

Query: 96  QDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQA 151
           ++ + + GV   DG++ DLGVSS Q+D  +RGFSF + GPLDMRM  S G++A++ + + 
Sbjct: 60  KEKMQEIGVMSVDGIMADLGVSSPQLDQAERGFSFMQDGPLDMRMDNSKGLTAAEWLLEI 119

Query: 152 NVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPAT 211
             + L  I+   GEE+ + RIA AI   +Q+    TT  L+ L+ KT +       HPAT
Sbjct: 120 EEEQLANIIYQYGEERYSRRIAKAI---KQAGKLDTTAQLAELV-KTAHPKWEKHKHPAT 175

Query: 212 RSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMA 271
           R+FQA+RI +N E++++   L  A   LK  G L V+SFHSLEDRL+K+F    S     
Sbjct: 176 RTFQAIRIAINKELDDIEVFLPQAVDLLKPKGRLSVISFHSLEDRLIKQFIQKESTLAED 235

Query: 272 VRHMIPSNAHPAVFQSITKKV--VVPTQEDVAFNRRSRSAKLRAGMR 316
           +   +P      V     KK+  V  ++E+V  N RSRSA LR   R
Sbjct: 236 IGWGMPQQ---QVDTRRLKKISRVRASEEEVKANPRSRSAWLRVAER 279


>gi|296081823|emb|CBI20828.3| unnamed protein product [Vitis vinifera]
          Length = 324

 Score =  169 bits (428), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 110/321 (34%), Positives = 168/321 (52%), Gaps = 38/321 (11%)

Query: 20  HVPVLLEKVIALLNPA-------PGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPF 69
           HVPV+L +V+ + +         P +  +D T GA G+S +  +    +   + +D DP 
Sbjct: 9   HVPVMLGEVLEVFSSFSSSSSSSPLRSFVDCTLGAAGHSSAIIQAHPELELYVGMDVDPI 68

Query: 70  AVSCGQETMRD------------YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQ 117
           A    Q  +R             +   F   ++   ++ + +   GVDG++ DLG+SSMQ
Sbjct: 69  AHEKAQARIRSLCGDSSHLKAHTFMRNFKNIKSVLREVDEELLSSGVDGILMDLGMSSMQ 128

Query: 118 IDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
           ++  +RGFS   +GPLDMRM   + ++A D++N     ++ RIL   GEE     + + I
Sbjct: 129 VNNAERGFSVLANGPLDMRMDPQASLTAEDILNSWPDTEVGRILREYGEESNWRSLQNKI 188

Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFSKNNR---IHPATRSFQALRIFVNNEIEELAQGLR 233
           VK R      +T +L  LI+KT   ++  R   I  ATR FQALRI VN+E++ L   L 
Sbjct: 189 VKARLFGGLHSTGELVDLIRKTTPRTRGGRQGWIKTATRVFQALRIAVNDELKTLEDSLY 248

Query: 234 SAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS--ITKK 291
           +  + L  GG L V+SFHSLEDR+VK+ F            +I SN     +    +TK+
Sbjct: 249 ACFECLTPGGRLAVISFHSLEDRIVKQTFLD----------IINSNGEDERWNGTILTKR 298

Query: 292 VVVPTQEDVAFNRRSRSAKLR 312
            + P++E+   NRRSRSAKLR
Sbjct: 299 PITPSEEEERLNRRSRSAKLR 319


>gi|256852642|ref|ZP_05558013.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis T8]
 gi|256711987|gb|EEU27024.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis T8]
          Length = 319

 Score =  169 bits (428), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 107/308 (34%), Positives = 170/308 (55%), Gaps = 19/308 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  V +D T G  G+S           ++ A D+D  A++  + 
Sbjct: 8   HYTVLLKETVDGLQVKPDGVYVDCTLGGAGHSEYLLTQLNEHGHLYAFDQDQKALAHAKT 67

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            ++ Y  K Q +  ++ F  +++ + + GV   DG+++DLGVSS Q+D  +RGFS+ +  
Sbjct: 68  RLQKYVDKGQVTFIKSNFRNIKEELAEHGVFHVDGILYDLGVSSPQLDEAERGFSYHQDA 127

Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM     ++A +VVN  +  +L +I    GEEK + +IA  I + R+  P +TT +
Sbjct: 128 PLDMRMDQDAPLTAREVVNTYSYSELVKIFFRYGEEKFSKQIAREIERVREKQPIETTGE 187

Query: 191 LSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I+  +   ++    HPA R FQA+RI VN+E+  + + L  A   L   G + V++
Sbjct: 188 LVEIIKTAIPAPARRKGGHPAKRIFQAIRIAVNDELGAVEESLEQAIDLLAKNGRISVIT 247

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPS-NAHPAVFQS----ITKKVVVPTQEDVAFNR 304
           FHSLEDR+VK  F   S     V+ + P     P  FQ     IT+K ++P+  +++ N 
Sbjct: 248 FHSLEDRIVKTMFKEYS----TVQDLPPGIPVVPEEFQPELKVITRKPILPSDSELSENN 303

Query: 305 RSRSAKLR 312
           RSRSAKLR
Sbjct: 304 RSRSAKLR 311


>gi|238019059|ref|ZP_04599485.1| hypothetical protein VEIDISOL_00921 [Veillonella dispar ATCC 17748]
 gi|237864314|gb|EEP65604.1| hypothetical protein VEIDISOL_00921 [Veillonella dispar ATCC 17748]
          Length = 310

 Score =  169 bits (428), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 107/308 (34%), Positives = 167/308 (54%), Gaps = 12/308 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
           +H  VLL + +  +   P  + +D T G  G++ +  +M      +I LD+D  A+S  +
Sbjct: 4   NHTSVLLRETVDSVVTNPKGIYVDCTLGGAGHAHAVGEMLDPEGMIIGLDQDEDALSVAR 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + + D   Q       FS L++ + ++G   VDG +FDLGVSS Q+D  +RGFS+   GP
Sbjct: 64  QRLSDLTCQVLTIPTNFSNLKEALHNEGIYEVDGFIFDLGVSSYQLDTPERGFSYMNDGP 123

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM     ++A +VVN+ +   L +I+   GEE+ A RI   I+  RQ     TT +L
Sbjct: 124 LDMRMDKDAPLTAEEVVNEYDADALLQIIRDYGEERWAKRIVEFIINARQEKRITTTGEL 183

Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I++ +   ++ +  HPA R+FQA+RI VN E+  L      A   LK  G + V++F
Sbjct: 184 VRIIKQAIPAKARQDGPHPAKRTFQAIRIEVNRELAILHDSFVDAVSMLKPKGKIGVITF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+ K+ F   S   +      M   N H AV ++   K + P+  ++  N R+RS
Sbjct: 244 HSLEDRITKQTFKELSTACICPPELPMCVCN-HKAVVKA-KNKAIEPSAGEIEVNPRARS 301

Query: 309 AKLRAGMR 316
           AKLR  ++
Sbjct: 302 AKLRVAVK 309


>gi|24378941|ref|NP_720896.1| S-adenosyl-methyltransferase MraW [Streptococcus mutans UA159]
 gi|30173045|sp|Q8DVM7|RSMH_STRMU RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|24376827|gb|AAN58202.1|AE014891_6 conserved hypoyhetical protein [Streptococcus mutans UA159]
          Length = 316

 Score =  169 bits (428), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 107/305 (35%), Positives = 170/305 (55%), Gaps = 14/305 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGS--NVIALDRDPFAVSCGQE 76
           H+ VLL + I +L+  P  + +DAT G  G+S     K+G   ++   D+D  A+   + 
Sbjct: 7   HITVLLHETIDMLDIKPDGIYVDATLGGAGHSECLLSKLGKEGHLYCFDQDQKAIDNAKI 66

Query: 77  TMRDYKE--QFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            ++ Y +  Q S  +  F  L+  + D+G+   DG+ +DLGVSS Q+D  +RGFS++K  
Sbjct: 67  RLQQYVKTGQVSFIKDNFRHLKSRLADEGIYEIDGICYDLGVSSPQLDERERGFSYKKDA 126

Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+    ++A DVVN  + +DL R+    GE+K + +IA  I   R+    +TT +
Sbjct: 127 PLDMRMNQDAQLTAFDVVNTYDYRDLVRLFFKYGEDKFSKQIARKIESARKEKLIETTAE 186

Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L+ +I K+   +K    + HPA + FQA+RI VN+E+    + L  A   L   G + V+
Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAAEESLTQALDLLALNGRIAVI 245

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F   +   V      +P N  P  F  + +K ++P   +++ N R+ 
Sbjct: 246 TFHSLEDRLTKQLFKEVTTLDVPKGLPFVPENLQPK-FSLVNRKPILPNARELSENNRAH 304

Query: 308 SAKLR 312
           SAKLR
Sbjct: 305 SAKLR 309


>gi|149178739|ref|ZP_01857322.1| S-adenosyl-methyltransferase MraW [Planctomyces maris DSM 8797]
 gi|148842437|gb|EDL56817.1| S-adenosyl-methyltransferase MraW [Planctomyces maris DSM 8797]
          Length = 305

 Score =  169 bits (428), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 112/313 (35%), Positives = 173/313 (55%), Gaps = 35/313 (11%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+PVLL +VI  L+ +PG +++D T GAGG+S    K  +N   +I LDRD  A+  G  
Sbjct: 13  HLPVLLREVITQLDLSPGLIVVDGTVGAGGHSEHILKKINNEGTLIGLDRD--AMMLGFA 70

Query: 77  TMRDYKEQFS-----LFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
           T +   E        L Q+++++L   + +     VD V+ DLG+SS Q+   +RGF F+
Sbjct: 71  TQKLKPESLPAGRCYLRQSSYAELPAVMEELQISSVDRVLLDLGLSSDQLSDDERGFGFE 130

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
            +G LD+R     G+ A  ++      +L  IL + GEE+ + RIA+ IVK+R++AP +T
Sbjct: 131 SAGELDLRFDTRQGVPAWQLLESLPESELCEILEVYGEERFSQRIANQIVKQRKTAPVRT 190

Query: 188 TQDLSSLIQKTVYFS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRSA-EKALKAGGL 244
             DL   +Q+ +        R +PATR FQALRI  N E+E+L   L +   + L+ GG 
Sbjct: 191 AADLIKAVQQAIPGKALAAARKNPATRVFQALRIAANQELEQLETMLETVLPQVLQPGGR 250

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
            +++SFHSLEDR             M+ R + P +      +++T K +V TQ +   N 
Sbjct: 251 AVIISFHSLEDR-------------MSSRRLKPGD-----LKNLTAKPIVATQAEQRVNP 292

Query: 305 RSRSAKLRAGMRT 317
           R R+AKLR  ++T
Sbjct: 293 RCRTAKLRVAVKT 305


>gi|212692815|ref|ZP_03300943.1| hypothetical protein BACDOR_02314 [Bacteroides dorei DSM 17855]
 gi|212664604|gb|EEB25176.1| hypothetical protein BACDOR_02314 [Bacteroides dorei DSM 17855]
          Length = 304

 Score =  169 bits (428), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 110/300 (36%), Positives = 167/300 (55%), Gaps = 16/300 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76
           H+PVLL + +  +N  PG + +DATFG GG+S+   S     +++ + D+D       + 
Sbjct: 9   HIPVLLNESVDGMNIQPGGIYVDATFGGGGHSKEILSRLDSTAHLYSFDQDE---DAEKN 65

Query: 77  TMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + D   +F+  ++ F  L +   Y   + VD ++ DLGVSS   D  +RGFSF+  G L
Sbjct: 66  IVSD--SRFTFVRSNFRYLSNFLRYYDVEEVDAILADLGVSSHHFDDSERGFSFRFEGKL 123

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  +G++A+DVVN  + + L  I  + GE K + ++A  IVK R      T  D  
Sbjct: 124 DMRMNKRAGMTAADVVNTYDEERLANIFYLYGELKNSHKLASTIVKARGVKQIITIGDFL 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I+    F +        + FQALRI VN E+E L + L +A KALK GG L+V+++HS
Sbjct: 184 EVIKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLYAAAKALKPGGRLVVITYHS 241

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK    + + +  A +    +   P  F+ +  KV+V   E+V  N RSRSAKLR
Sbjct: 242 LEDRMVKNIMKTGNIEGKAEQDFFGNVQTP--FKLVNSKVIVAGNEEVTCNPRSRSAKLR 299


>gi|83319603|ref|YP_424368.1| S-adenosyl-methyltransferase MraW [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
 gi|123535772|sp|Q2SS95|RSMH_MYCCT RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|83283489|gb|ABC01421.1| S-adenosyl-methyltransferase MraW [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
          Length = 309

 Score =  169 bits (428), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 111/307 (36%), Positives = 165/307 (53%), Gaps = 22/307 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+PVLL++ I  LN     + +D T G  G++    K  S    + A+D+D  A+   +E
Sbjct: 4   HIPVLLDESIKYLNIKLNGIYVDCTLGRAGHASEILKRLSQNGFLYAIDQDKTAIGQAKE 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +      F L Q  FS L   +       VDG+++DLGVSS Q+D G RGFS++  GPL
Sbjct: 64  KLEKISNNFFLIQGNFSNLSALLAINHIFSVDGILYDLGVSSPQLDIGSRGFSYRIDGPL 123

Query: 134 DMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           DMRM  +   ++A  ++NQ +   +  IL   GEE  A  IA  IV  R   P  +T  L
Sbjct: 124 DMRMDITNNNLTADTIINQYSETQIEDILFKYGEESFAKSIAKKIVLSR---PINSTLQL 180

Query: 192 -----SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
                S+L QK +   K    HPA ++FQALRIF+NNE+  L   L+ A   L + G + 
Sbjct: 181 VEVIKSALPQKVLKQKK----HPAKKTFQALRIFINNELIVLENSLKQALDLLNSKGRIC 236

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMA-VRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNR 304
           V++FHSLE+++VK  F S +      + + +P  A+  + F+ + KK + P+  ++  N 
Sbjct: 237 VITFHSLEEKIVKNIFNSSTNYFQEQLFNNLPIKANLNSQFKLVIKKPIKPSLLELENNH 296

Query: 305 RSRSAKL 311
           RS SAKL
Sbjct: 297 RSHSAKL 303


>gi|227555099|ref|ZP_03985146.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis HH22]
 gi|229548930|ref|ZP_04437655.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis ATCC
           29200]
 gi|293382538|ref|ZP_06628472.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis R712]
 gi|293387861|ref|ZP_06632400.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis S613]
 gi|307268069|ref|ZP_07549457.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX4248]
 gi|307272003|ref|ZP_07553269.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0855]
 gi|307275472|ref|ZP_07556614.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX2134]
 gi|307278960|ref|ZP_07560019.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0860]
 gi|307289409|ref|ZP_07569363.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0109]
 gi|312904551|ref|ZP_07763709.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0635]
 gi|312906859|ref|ZP_07765856.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis DAPTO 512]
 gi|312952739|ref|ZP_07771601.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0102]
 gi|312978886|ref|ZP_07790612.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis DAPTO 516]
 gi|227175767|gb|EEI56739.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis HH22]
 gi|229305951|gb|EEN71947.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis ATCC
           29200]
 gi|291080086|gb|EFE17450.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis R712]
 gi|291082708|gb|EFE19671.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis S613]
 gi|306499664|gb|EFM69027.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0109]
 gi|306504347|gb|EFM73558.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0860]
 gi|306507860|gb|EFM76988.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX2134]
 gi|306511298|gb|EFM80302.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0855]
 gi|306515710|gb|EFM84237.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX4248]
 gi|310627113|gb|EFQ10396.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis DAPTO 512]
 gi|310629255|gb|EFQ12538.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0102]
 gi|310632064|gb|EFQ15347.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0635]
 gi|311288323|gb|EFQ66879.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis DAPTO 516]
 gi|315031725|gb|EFT43657.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0017]
 gi|315034218|gb|EFT46150.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0027]
 gi|315144374|gb|EFT88390.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX2141]
 gi|315149512|gb|EFT93528.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0012]
 gi|315153065|gb|EFT97081.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0031]
 gi|315156838|gb|EFU00855.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0043]
 gi|315157624|gb|EFU01641.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0312]
 gi|315162946|gb|EFU06963.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0645]
 gi|315165146|gb|EFU09163.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX1302]
 gi|315168045|gb|EFU12062.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX1341]
 gi|315171926|gb|EFU15943.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX1342]
 gi|315173297|gb|EFU17314.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX1346]
 gi|315574267|gb|EFU86458.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0309B]
 gi|315577395|gb|EFU89586.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0630]
 gi|315581578|gb|EFU93769.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0309A]
 gi|327534575|gb|AEA93409.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis OG1RF]
 gi|329574359|gb|EGG55931.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX1467]
          Length = 322

 Score =  169 bits (428), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 108/316 (34%), Positives = 172/316 (54%), Gaps = 19/316 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  V +D T G  G+S           ++ A D+D  A++  + 
Sbjct: 11  HYTVLLKETVDGLQVKPDGVYVDCTLGGAGHSEYLLTQLNEHGHLYAFDQDQKALAHAKT 70

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            ++ Y  K Q +  ++ F  +++ + + GV   DG+++DLGVSS Q+D  +RGFS+ +  
Sbjct: 71  RLQKYVDKGQVTFIKSNFRNIKEELAEHGVFHVDGILYDLGVSSPQLDEAERGFSYHQDA 130

Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM     ++A +VVN  +  +L +I    GEEK + +IA  I + R+  P +TT +
Sbjct: 131 PLDMRMDQDAPLTAREVVNTYSYSELVKIFFRYGEEKFSKQIAREIERVREKQPIETTGE 190

Query: 191 LSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I+  +   ++    HPA R FQA+RI VN+E+  + + L  A   L   G + V++
Sbjct: 191 LVEIIKTAIPAPARRKGGHPAKRIFQAIRIAVNDELGAVEESLEQAIDLLAKNGRISVIT 250

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPS-NAHPAVFQS----ITKKVVVPTQEDVAFNR 304
           FHSLEDR+VK  F   S     V+ + P     P  FQ     IT+K ++P+  +++ N 
Sbjct: 251 FHSLEDRIVKTMFKEYS----TVQDLPPGIPVVPEEFQPELKVITRKPILPSDSELSENN 306

Query: 305 RSRSAKLRAGMRTVER 320
           RSRSAKLR   +   R
Sbjct: 307 RSRSAKLRIAEKIKSR 322


>gi|255971443|ref|ZP_05422029.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Enterococcus faecalis T1]
 gi|255974058|ref|ZP_05424644.1| mraW [Enterococcus faecalis T2]
 gi|256617913|ref|ZP_05474759.1| mraW [Enterococcus faecalis ATCC 4200]
 gi|256761747|ref|ZP_05502327.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Enterococcus faecalis T3]
 gi|256957082|ref|ZP_05561253.1| mraW [Enterococcus faecalis DS5]
 gi|256960173|ref|ZP_05564344.1| mraW [Enterococcus faecalis Merz96]
 gi|256962585|ref|ZP_05566756.1| mraW [Enterococcus faecalis HIP11704]
 gi|257077878|ref|ZP_05572239.1| mraW [Enterococcus faecalis JH1]
 gi|257081242|ref|ZP_05575603.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis E1Sol]
 gi|257083900|ref|ZP_05578261.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis Fly1]
 gi|257086348|ref|ZP_05580709.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Enterococcus faecalis D6]
 gi|257089398|ref|ZP_05583759.1| S-adenosyl-methyltransferase mraW [Enterococcus faecalis CH188]
 gi|257415608|ref|ZP_05592602.1| mraW [Enterococcus faecalis AR01/DG]
 gi|257418579|ref|ZP_05595573.1| S-adenosyl-methyltransferase mraW [Enterococcus faecalis T11]
 gi|257421238|ref|ZP_05598228.1| S-adenosyl-methyltransferase mraW [Enterococcus faecalis X98]
 gi|294780578|ref|ZP_06745941.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis PC1.1]
 gi|300859663|ref|ZP_07105751.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TUSoD
           Ef11]
 gi|30179792|sp|O07104|RSMH_ENTFA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|255962461|gb|EET94937.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Enterococcus faecalis T1]
 gi|255966930|gb|EET97552.1| mraW [Enterococcus faecalis T2]
 gi|256597440|gb|EEU16616.1| mraW [Enterococcus faecalis ATCC 4200]
 gi|256682998|gb|EEU22693.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Enterococcus faecalis T3]
 gi|256947578|gb|EEU64210.1| mraW [Enterococcus faecalis DS5]
 gi|256950669|gb|EEU67301.1| mraW [Enterococcus faecalis Merz96]
 gi|256953081|gb|EEU69713.1| mraW [Enterococcus faecalis HIP11704]
 gi|256985908|gb|EEU73210.1| mraW [Enterococcus faecalis JH1]
 gi|256989272|gb|EEU76574.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis E1Sol]
 gi|256991930|gb|EEU79232.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis Fly1]
 gi|256994378|gb|EEU81680.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Enterococcus faecalis D6]
 gi|256998210|gb|EEU84730.1| S-adenosyl-methyltransferase mraW [Enterococcus faecalis CH188]
 gi|257157436|gb|EEU87396.1| mraW [Enterococcus faecalis ARO1/DG]
 gi|257160407|gb|EEU90367.1| S-adenosyl-methyltransferase mraW [Enterococcus faecalis T11]
 gi|257163062|gb|EEU93022.1| S-adenosyl-methyltransferase mraW [Enterococcus faecalis X98]
 gi|294452405|gb|EFG20844.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis PC1.1]
 gi|300850481|gb|EFK78230.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TUSoD
           Ef11]
 gi|323480228|gb|ADX79667.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis 62]
          Length = 318

 Score =  169 bits (428), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 108/316 (34%), Positives = 172/316 (54%), Gaps = 19/316 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  V +D T G  G+S           ++ A D+D  A++  + 
Sbjct: 7   HYTVLLKETVDGLQVKPDGVYVDCTLGGAGHSEYLLTQLNEHGHLYAFDQDQKALAHAKT 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            ++ Y  K Q +  ++ F  +++ + + GV   DG+++DLGVSS Q+D  +RGFS+ +  
Sbjct: 67  RLQKYVDKGQVTFIKSNFRNIKEELAEHGVFHVDGILYDLGVSSPQLDEAERGFSYHQDA 126

Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM     ++A +VVN  +  +L +I    GEEK + +IA  I + R+  P +TT +
Sbjct: 127 PLDMRMDQDAPLTAREVVNTYSYSELVKIFFRYGEEKFSKQIAREIERVREKQPIETTGE 186

Query: 191 LSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I+  +   ++    HPA R FQA+RI VN+E+  + + L  A   L   G + V++
Sbjct: 187 LVEIIKTAIPAPARRKGGHPAKRIFQAIRIAVNDELGAVEESLEQAIDLLAKNGRISVIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPS-NAHPAVFQS----ITKKVVVPTQEDVAFNR 304
           FHSLEDR+VK  F   S     V+ + P     P  FQ     IT+K ++P+  +++ N 
Sbjct: 247 FHSLEDRIVKTMFKEYS----TVQDLPPGIPVVPEEFQPELKVITRKPILPSDSELSENN 302

Query: 305 RSRSAKLRAGMRTVER 320
           RSRSAKLR   +   R
Sbjct: 303 RSRSAKLRIAEKIKSR 318


>gi|237709504|ref|ZP_04539985.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 9_1_42FAA]
 gi|229456560|gb|EEO62281.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 9_1_42FAA]
          Length = 304

 Score =  169 bits (428), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 110/300 (36%), Positives = 167/300 (55%), Gaps = 16/300 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76
           H+PVLL + +  +N  PG + +DATFG GG+S+   S     +++ + D+D       + 
Sbjct: 9   HIPVLLNESVDGMNIQPGGIYVDATFGGGGHSKEILSRLDSTAHLYSFDQDE---DAEKN 65

Query: 77  TMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + D   +F+  ++ F  L +   Y   + VD ++ DLGVSS   D  +RGFSF+  G L
Sbjct: 66  IVSD--SRFTFVRSNFRYLSNFLRYYDVEEVDAILADLGVSSHHFDDSERGFSFRFEGKL 123

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  +G++A+DVVN  + + L  I  + GE K + ++A  IVK R      T  D  
Sbjct: 124 DMRMNKRAGMTAADVVNTYDEERLANIFYLYGELKNSRKLASTIVKARGVKQIITIGDFL 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I+    F +        + FQALRI VN E+E L + L +A KALK GG L+V+++HS
Sbjct: 184 EVIKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLYAATKALKPGGRLVVITYHS 241

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK    + + +  A +    +   P  F+ +  KV+V   E+V  N RSRSAKLR
Sbjct: 242 LEDRMVKNIMKTGNIEGKAEQDFFGNVQTP--FKLVNSKVIVAGNEEVTCNPRSRSAKLR 299


>gi|299143950|ref|ZP_07037030.1| S-adenosyl-methyltransferase MraW [Peptoniphilus sp. oral taxon 386
           str. F0131]
 gi|298518435|gb|EFI42174.1| S-adenosyl-methyltransferase MraW [Peptoniphilus sp. oral taxon 386
           str. F0131]
          Length = 312

 Score =  169 bits (428), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 112/314 (35%), Positives = 166/314 (52%), Gaps = 22/314 (7%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
           +H  VL E  I LLN     + +D T G  G+S    K+ +    +I +D+D  A+   +
Sbjct: 4   NHKSVLFEDTINLLNIKENGIYVDGTIGGAGHSSQILKILNGTGLLIGIDQDLAALEKSK 63

Query: 76  ETMRDY-KEQFSLFQAT---FSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           E + +     + LF +    F+ + D +    VDG + DLGVSS Q D GDRGFS+    
Sbjct: 64  EVLGELGYNNYKLFNSNYKDFNVILDSLEIDKVDGFLLDLGVSSYQFDEGDRGFSYNYDA 123

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM   +  SA D+VN  + +++ +IL    EEK A RIA  IVK R   P  TT +
Sbjct: 124 KLDMRMDTNAAFSAWDIVNGYSKEEIAKILWDYSEEKWAGRIADFIVKSRIKKPIDTTFE 183

Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I+  +   ++  + HPA ++FQALRI  NNE++ L   L      L  GG + V+S
Sbjct: 184 LVEIIKNAIPAAARKKKGHPAKKTFQALRIETNNELDVLRNTLGRMIDRLNPGGRIAVIS 243

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-------FQSITKKVVVPTQEDVAF 302
           FHSLEDR+VK+ F     K   +  + P  A P          + IT+K +V +++++  
Sbjct: 244 FHSLEDRIVKETF-----KYYYLDCICPEKA-PVCNCGKKREIEIITRKPIVASEKELIE 297

Query: 303 NRRSRSAKLRAGMR 316
           N R+ SAKLR   +
Sbjct: 298 NNRAHSAKLRVAEK 311


>gi|226941977|ref|YP_002797051.1| S-adenosyl-methyltransferase MraW [Laribacter hongkongensis HLHK9]
 gi|263456276|sp|C1D5M5|RSMH_LARHH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|226716904|gb|ACO76042.1| MraW [Laribacter hongkongensis HLHK9]
          Length = 317

 Score =  169 bits (428), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 117/308 (37%), Positives = 171/308 (55%), Gaps = 15/308 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMG--SNVIALDRDPFAVSCGQE 76
           HV VLL++ +  L   P  V +D TFG GG+SR    ++G    ++A D+DP A++   E
Sbjct: 7   HVTVLLQEAVEALAIRPDGVYVDCTFGRGGHSRLVLSRLGPAGRLVAFDKDPQAIAVATE 66

Query: 77  TMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  + ++    F+ L    D +    VDGV+ DLGVSS QID   RGFSF+   PL
Sbjct: 67  L---DDPRLTIVHEGFAGLDRELDRLGIDKVDGVLMDLGVSSPQIDDASRGFSFRFDAPL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF-QTTQDL 191
           DMRM  + G +A+D + +A+  ++  ++   GEE+ A+ IA AIV  R    F  TT +L
Sbjct: 124 DMRMDTTRGETAADWLARADEAEIRTVIRDYGEERFAASIARAIVANRLEGQFLTTTGEL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           ++L  + V   +  +  PATR+FQA+RIF+N E++EL   L  A + L+ GG L+V++FH
Sbjct: 184 AALCARCVRTREKGQ-DPATRTFQAIRIFINRELDELQAVLPQAVRRLRPGGRLVVIAFH 242

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAH--PAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK F    S      R + P  A   P     +  K V    E +A N R+RSA
Sbjct: 243 SLEDRIVKLFLRDASSPPELPRGL-PVRAADLPEPPLRLVGKPVREGDEQLARNPRARSA 301

Query: 310 KLRAGMRT 317
            +R   R+
Sbjct: 302 IMRVAERS 309


>gi|19705032|ref|NP_602527.1| S-adenosyl-methyltransferase MraW [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|21759278|sp|Q8R6F5|RSMH_FUSNN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|19712944|gb|AAL93826.1| Methyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
          Length = 314

 Score =  169 bits (428), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 109/306 (35%), Positives = 173/306 (56%), Gaps = 20/306 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+PVL  + +  L   P    +D T G G +S    +  S+   +I++D+D  A+   ++
Sbjct: 9   HIPVLYYETLDNLVINPDGTYIDCTLGGGSHSEGILERLSDKGLLISIDQDTNAIEYSKK 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  +  ++ +F+  F  +       GVD   G++ D+GVSS Q+D  DRGFS++    L
Sbjct: 69  RLEKFGSKWKVFKGNFENIDTIAYMAGVDKVDGILMDIGVSSKQLDDPDRGFSYRYDVKL 128

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+    ISA DVVN  + + L++I+   GEE+ A +IA  IV+ R+S+P + T DL 
Sbjct: 129 DMRMNTDQKISAYDVVNTYSEEQLSKIIFEYGEERHARKIAKLIVEERKSSPIEKTSDLI 188

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +LI++   + +    HPA ++FQA+RI VN E+E L   +  A + LK GG L +++FHS
Sbjct: 189 TLIKRA--YPERASKHPAKKTFQAIRIEVNRELEVLENAMSKAVELLKVGGRLAIITFHS 246

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV------FQSITKKVVVPTQEDVAFNRRS 306
           LEDR+VK  F     K +A     P +    V      F+ ITKK ++P  +++  N R+
Sbjct: 247 LEDRIVKNKF-----KDLATACKCPKDIPICVCGGVKKFEIITKKPIIPIDDELKNNNRA 301

Query: 307 RSAKLR 312
            S+KLR
Sbjct: 302 HSSKLR 307


>gi|289449724|ref|YP_003474673.1| S-adenosyl-methyltransferase MraW [Clostridiales genomosp. BVAB3
           str. UPII9-5]
 gi|289184271|gb|ADC90696.1| S-adenosyl-methyltransferase MraW [Clostridiales genomosp. BVAB3
           str. UPII9-5]
          Length = 362

 Score =  169 bits (428), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 109/303 (35%), Positives = 168/303 (55%), Gaps = 10/303 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HVPVLL + +  L+       +D T G  G+S +  +    G  + A D+DP A      
Sbjct: 40  HVPVLLTECLKALDLKANGTYVDCTAGGAGHSAAILQRLGSGGRLFAFDKDPTARQAAAA 99

Query: 77  TMRDYKE--QFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +   K    + L  A F+ L++ +  +    VDG++ DLGVSS Q+D G+RGF+++  G
Sbjct: 100 KLAQVKTAATYELIAADFASLREELSKRNVFAVDGILADLGVSSPQLDTGERGFAYRLEG 159

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+   G +A+D++   +   LTRI+   GEE+ A+RIA A+VK R++ P   T +
Sbjct: 160 PLDMRMNPTCGRTAADILRLEDQATLTRIMREYGEERYAARIAAAVVKTRETKPLTGTGE 219

Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  LI K V   ++  + HPA R FQ+LRI VN+E+  L + L+ A   LK  G L++++
Sbjct: 220 LVDLICKAVPAAARREKQHPAKRVFQSLRIAVNDELGALRKLLQQAPGLLKPDGHLVIIT 279

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRLVK+ F            +       +  ++     +V  + ++A N RSRSA
Sbjct: 280 FHSLEDRLVKQAFRRWERPCRCPSGLPCVCGLASQGKADPPHGLVAGKTELAENPRSRSA 339

Query: 310 KLR 312
           ++R
Sbjct: 340 RVR 342


>gi|57866678|ref|YP_188327.1| S-adenosyl-methyltransferase MraW [Staphylococcus epidermidis
           RP62A]
 gi|242242461|ref|ZP_04796906.1| S-adenosyl-methyltransferase MraW [Staphylococcus epidermidis
           W23144]
 gi|68565427|sp|Q5HQ13|RSMH_STAEQ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|57637336|gb|AAW54124.1| S-adenosyl-methyltransferase MraW [Staphylococcus epidermidis
           RP62A]
 gi|242234035|gb|EES36347.1| S-adenosyl-methyltransferase MraW [Staphylococcus epidermidis
           W23144]
 gi|319401527|gb|EFV89737.1| S-adenosyl-methyltransferase MraW [Staphylococcus epidermidis
           FRI909]
          Length = 311

 Score =  169 bits (428), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 103/305 (33%), Positives = 166/305 (54%), Gaps = 11/305 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           HV V+L + I  LN     V +D T G  G++       ++   +IA+D+D  A+   +E
Sbjct: 4   HVSVMLNETIDYLNIKEDGVYVDCTLGGAGHALYLLNQLNDKGRLIAIDQDLTAIENAKE 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++++  + +     F +L + + +     VDG+ +DLGVSS Q+D  +RGFS+     L
Sbjct: 64  VLKEHLHKVTFVHNNFRELTNILNELEIDKVDGIYYDLGVSSPQLDVPERGFSYHNDAKL 123

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     +SA +VVNQ + + L +I    GEEK + +IA  I   R+  P +TT +L 
Sbjct: 124 DMRMDQTQSLSAYEVVNQWSYEALVKIFYRYGEEKFSKQIARRIEAHREQQPIETTLELV 183

Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I++ +   ++    HPA R FQA+RI VN+E+      +  A + +K GG + V++FH
Sbjct: 184 DVIKEGIPAKARRKGGHPAKRVFQAIRIAVNDELSAFEDSVEQAIECVKVGGRISVITFH 243

Query: 252 SLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDRL K+ F    +   V     +IP    P + + + +K +  T +D+  N R+RSA
Sbjct: 244 SLEDRLCKQIFQEFEKGPDVPRGLPVIPEAYTPKL-KRVNRKPITATDDDLNENNRARSA 302

Query: 310 KLRAG 314
           KLR  
Sbjct: 303 KLRVA 307


>gi|237743305|ref|ZP_04573786.1| methyltransferase [Fusobacterium sp. 7_1]
 gi|229433084|gb|EEO43296.1| methyltransferase [Fusobacterium sp. 7_1]
          Length = 314

 Score =  169 bits (428), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 108/313 (34%), Positives = 175/313 (55%), Gaps = 20/313 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+PVL  + +  L   P  + +D T G G +S    +  S+   +I++D+D  A+   ++
Sbjct: 9   HIPVLYYETLDNLVINPDGIYIDCTLGGGSHSEGILERLSDKGLLISIDQDSTAIEYSKK 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  +  ++ +F+  F  +       GVD   G++ D+GVSS Q+D   RGFS++    L
Sbjct: 69  RLEKFGSKWKVFKGNFENIDTIAYTAGVDKVDGILMDIGVSSKQLDDPKRGFSYRYDVKL 128

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+    ISA D+VN    + L++I+   GEE+ A +IA  IV+ R+S+P + T DL 
Sbjct: 129 DMRMNTDQKISAYDIVNTYTEEQLSKIIFEYGEERHARKIAKLIVEERKSSPIEKTSDLI 188

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +LI++   + +    HPA ++FQA+RI VN E+E L   +  A + LK GG L +++FHS
Sbjct: 189 TLIKRA--YPERASKHPAKKTFQAIRIEVNRELEVLGNAISKAAELLKVGGRLAIITFHS 246

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV------FQSITKKVVVPTQEDVAFNRRS 306
           LEDR+VK  F     K +A     P +    V      F+ ITKK ++P  +++  N R+
Sbjct: 247 LEDRIVKNKF-----KDLATACKCPKDIPICVCGGVKKFEIITKKPIIPIDDELKNNNRA 301

Query: 307 RSAKLRAGMRTVE 319
            S+KLR   R ++
Sbjct: 302 HSSKLRILERILD 314


>gi|297170224|gb|ADI21262.1| predicted S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [uncultured myxobacterium
           HF0010_08B07]
          Length = 285

 Score =  169 bits (427), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 101/283 (35%), Positives = 157/283 (55%), Gaps = 22/283 (7%)

Query: 39  VILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95
           + LD TFG GG+++    K+ S   +I+ D D  A+   +    D K  F   +  FS +
Sbjct: 11  LYLDCTFGRGGHTKKILDKLSSEGQLISFDLDDDAMKVAKNI--DNK-NFKFIKTNFSMI 67

Query: 96  QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVK 154
            DYV D  + GV+ D GVSS Q+D  +RGFSFQ  GPLDMR +    ++  D++   + K
Sbjct: 68  DDYVEDDSLSGVLIDCGVSSPQLDEPERGFSFQTKGPLDMRFNQEQKLTCKDIIENYSEK 127

Query: 155 DLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSF 214
           ++  IL   GEEK++ RIA  IVK+R+      T  L+ +I+     +   + HPAT+SF
Sbjct: 128 EIATILWKFGEEKESRRIAKLIVKQREQNVIDNTLVLAEIIKTAK--TVKTKKHPATKSF 185

Query: 215 QALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH 274
           QALR+ VN+E E L   L   +  L   G L++++FHSLEDR+ K+ F  +         
Sbjct: 186 QALRMAVNSEFENLTTCLDRIKDKLTKSGKLVIITFHSLEDRIAKQTFKPKIN------- 238

Query: 275 MIPSNAHPAVFQSITK-----KVVVPTQEDVAFNRRSRSAKLR 312
                  P +++ ++      K++ P+QE+++ N R+RSAK+R
Sbjct: 239 -FHEKNLPLIYEDVSDKFKISKIIYPSQEEISMNPRARSAKMR 280


>gi|317504120|ref|ZP_07962122.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Prevotella salivae DSM 15606]
 gi|315664792|gb|EFV04457.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Prevotella salivae DSM 15606]
          Length = 316

 Score =  169 bits (427), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 114/306 (37%), Positives = 168/306 (54%), Gaps = 17/306 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFA------ 70
           HVPVLL++ +  LN   G V +D TFG GG+S    S     +++ + D+D  A      
Sbjct: 9   HVPVLLKESVDGLNIQSGGVYVDVTFGGGGHSSEILSRLDEQAHLYSFDQDADAEQNVMR 68

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSF 127
              G E       +F+  ++ F  L++++   GV   DG++ DLGVSS   D   RGFSF
Sbjct: 69  SEVGAERRFVDDSRFTFVRSNFRYLKNWMRYYGVESIDGLLADLGVSSHHFDDESRGFSF 128

Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           +    LDMRM+  +G +A+D+VN  + + L  +  + GE KQ+ R+A A+VK R      
Sbjct: 129 RFDAQLDMRMNKRAGKTAADIVNDYDEEALANLFYLYGEIKQSRRLAAAVVKARSQQHIA 188

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           TTQDL  +++    F +        + FQALRI VN+E++ L + L+SA + LK GG L 
Sbjct: 189 TTQDLLGILEPI--FKREREKKDLAKVFQALRIEVNHEMDALKEMLKSATELLKPGGRLS 246

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+++HSLEDR+VK     ++G V   R           F  I  KV+VP++ +   N RS
Sbjct: 247 VITYHSLEDRIVKNIM--KTGNVEGKRIQDFYGRIETPFTLINNKVIVPSENEQQENPRS 304

Query: 307 RSAKLR 312
           RSAKLR
Sbjct: 305 RSAKLR 310


>gi|290969165|ref|ZP_06560690.1| S-adenosyl-methyltransferase MraW [Megasphaera genomosp. type_1
           str. 28L]
 gi|290780671|gb|EFD93274.1| S-adenosyl-methyltransferase MraW [Megasphaera genomosp. type_1
           str. 28L]
          Length = 310

 Score =  169 bits (427), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 116/307 (37%), Positives = 174/307 (56%), Gaps = 12/307 (3%)

Query: 20  HVPVLLEKVIA-LLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPFAVSCGQ 75
           HV VL E+ +A +L P  G + +D T G GG++ +     +  + VI LDRD  A+    
Sbjct: 5   HVSVLREETVAAVLGPKNG-IYVDCTLGGGGHAATLAAQLQEEALVIGLDRDRDALRAAA 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             ++    +  L Q  F  L D + +     VDG++FDLGVS  Q+D  +RGFS+ + GP
Sbjct: 64  ARLQGVPCRTRLVQRNFQYLADVLQELHLPYVDGIMFDLGVSGYQLDTPERGFSYMQDGP 123

Query: 133 LDMRMS--CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           LDMRM   C+ + AS VVN  + + L  ++   GEE+ A RIA  IV+ R+  PF  T +
Sbjct: 124 LDMRMDQRCA-VPASTVVNTYSEEALYSLIKAYGEERWAKRIAAFIVRARRQKPFSRTAE 182

Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I++ +   ++ +  HPA R+FQALRI VNNE+  L   L +A + LK GG + V++
Sbjct: 183 LVYVIKQAIPAGARRDGPHPAKRTFQALRIEVNNELGILHDALTTAVQHLKPGGKIGVIT 242

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDR+ K+ F   +   +    +     H      + ++VV P+ ++VA N R+RSA
Sbjct: 243 FHSLEDRITKQTFKELATDCICPPDLPVCTCHHRASIRVRRQVVTPSPQEVADNPRARSA 302

Query: 310 KLRAGMR 316
           KLR   R
Sbjct: 303 KLRVAER 309


>gi|288800555|ref|ZP_06406013.1| S-adenosyl-methyltransferase MraW [Prevotella sp. oral taxon 299
           str. F0039]
 gi|288332768|gb|EFC71248.1| S-adenosyl-methyltransferase MraW [Prevotella sp. oral taxon 299
           str. F0039]
          Length = 312

 Score =  169 bits (427), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 112/305 (36%), Positives = 166/305 (54%), Gaps = 18/305 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSC--- 73
           H+PVLL + I  LN  PG + +D T G GG+S    K   + +++ + D+D  A +    
Sbjct: 9   HIPVLLNESIDGLNIQPGGIYVDVTMGGGGHSHEILKRLDVNAHLYSFDQDADAEANLKQ 68

Query: 74  --GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQ 128
             G + ++D  E+F+  ++ F  L++++   GV   DG++ DLGVSS   D   RGFSF+
Sbjct: 69  NHGDDLLKD--ERFTFVRSNFRYLKNWMRYHGVEQIDGLLADLGVSSHHFDDESRGFSFR 126

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
              PLDMRM+  S  +A+D+VN    + L  I  + GE K + +IA  +VK RQ    +T
Sbjct: 127 FESPLDMRMNKRSSRTAADIVNNYAEEALADIFYLYGELKNSRKIASLLVKARQEKRIET 186

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T D  ++++    F +        + FQALRI VN E+  L + L S    LK GG L V
Sbjct: 187 TGDFIAVVEPL--FKREREKKDLAKLFQALRIEVNGEMSALKELLMSVVDMLKPGGRLSV 244

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +++HSLEDR+VK     ++G +               F+ I  KV+VPT E+   N RSR
Sbjct: 245 ITYHSLEDRIVKNIM--KAGNIEGKIEQDFFGCINTPFKLINNKVIVPTDEEQEQNPRSR 302

Query: 308 SAKLR 312
           SAKLR
Sbjct: 303 SAKLR 307


>gi|237742793|ref|ZP_04573274.1| S-adenosyl-methyltransferase mraW [Fusobacterium sp. 4_1_13]
 gi|229430441|gb|EEO40653.1| S-adenosyl-methyltransferase mraW [Fusobacterium sp. 4_1_13]
          Length = 314

 Score =  169 bits (427), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 110/313 (35%), Positives = 176/313 (56%), Gaps = 20/313 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+PVL  + +  L   P  + +D T G G +S    +  S+   +I++D+D  A+   ++
Sbjct: 9   HIPVLYYETLDNLVINPDGIYIDCTLGGGSHSEGILERLSDKGLLISIDQDTNAIEYSKK 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  +  ++ +F+  F  +       GVD   G++ D+GVSS Q+D   RGFS++    L
Sbjct: 69  RLEKFGSKWKVFKGNFENIDTIAYMAGVDKVDGILMDIGVSSKQLDDPKRGFSYRYDVKL 128

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+    ISA DVVN  + + L++I+   GEE+ A +IA  IV+ R+S+P + T DL 
Sbjct: 129 DMRMNTEQKISAYDVVNTYSEEQLSKIIFEYGEERHARKIAKLIVEERKSSPIEKTSDLI 188

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +LI++   + +    HPA ++FQA+RI VN E+E L   +  A + LK GG L +++FHS
Sbjct: 189 ALIKRA--YPERASKHPAKKTFQAIRIEVNRELEVLENAMSKAVELLKVGGRLAIITFHS 246

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV------FQSITKKVVVPTQEDVAFNRRS 306
           LEDR+VK  F     K +A     P +    V      F+ ITKK ++P  +++  N RS
Sbjct: 247 LEDRIVKNKF-----KDLATACKCPKDIPICVCGGVKKFEIITKKPIIPIDDELKNNNRS 301

Query: 307 RSAKLRAGMRTVE 319
            S+KLR   R ++
Sbjct: 302 HSSKLRILERILD 314


>gi|42561121|ref|NP_975572.1| S-adenosyl-methyltransferase MraW [Mycoplasma mycoides subsp.
           mycoides SC str. PG1]
 gi|115311585|sp|P62473|RSMH_MYCMS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|42492618|emb|CAE77214.1| MraW methylase family protein [Mycoplasma mycoides subsp. mycoides
           SC str. PG1]
 gi|301320523|gb|ADK69166.1| S-adenosyl-methyltransferase MraW [Mycoplasma mycoides subsp.
           mycoides SC str. Gladysdale]
          Length = 308

 Score =  169 bits (427), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 108/306 (35%), Positives = 164/306 (53%), Gaps = 21/306 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+PVLL++ I  LN  P  + +D T G  G+S    K  +    + A+D+D  A+   +E
Sbjct: 4   HIPVLLKESIEYLNIKPDGIYVDCTLGRAGHSSEILKKLNQKGFLYAIDQDQIAIDQAKE 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +      F L Q  FS L   +       VDG+++DLGVSS QID   RGFS++  GPL
Sbjct: 64  KLEQINNNFLLIQGNFSNLSALLAINHVFNVDGILYDLGVSSPQIDIASRGFSYKMDGPL 123

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL- 191
           DMRM   S ++A  V+N  +   ++ IL   GEE  +  I+  IV+ R   P  +T +L 
Sbjct: 124 DMRMDLNSTLTAHQVINTYSESQISEILFKYGEESFSKSISKKIVESR---PINSTLELV 180

Query: 192 ----SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
               S+L QK +   K    HPA ++FQALRI++NNE+  L   L+ A   L +   + V
Sbjct: 181 EIIKSALPQKVLKQKK----HPAKKTFQALRIYINNELIALENSLKQALDLLNSKARICV 236

Query: 248 VSFHSLEDRLVKKFFASRSGKVMA-VRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRR 305
           ++FHSLE+++VK  F + +      +   +P  A   + F+ + KK + P+  ++  N R
Sbjct: 237 ITFHSLEEKIVKNIFNNSTNYYQEQLLSNLPIKADLNSKFKLVIKKPIKPSLLELEQNHR 296

Query: 306 SRSAKL 311
           S SAKL
Sbjct: 297 SHSAKL 302


>gi|227517912|ref|ZP_03947961.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0104]
 gi|227074666|gb|EEI12629.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0104]
          Length = 322

 Score =  169 bits (427), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 107/308 (34%), Positives = 170/308 (55%), Gaps = 19/308 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  V +D T G  G+S           ++ A D+D  A++  + 
Sbjct: 11  HYTVLLKETVDGLQVKPDGVYVDCTLGGAGHSEYLLTQLNEHGHLYAFDQDQKALAHAKT 70

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            ++ Y  K Q +  ++ F  +++ + + GV   DG+++DLGVSS Q+D  +RGFS+ +  
Sbjct: 71  RLQKYVDKGQVTFIKSNFRNIKEELAEHGVFHVDGILYDLGVSSPQLDEAERGFSYHQDA 130

Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM     ++A +VVN  +  +L +I    GEEK + +IA  I + R+  P +TT +
Sbjct: 131 PLDMRMDQDAPLTAREVVNTYSYGELVKIFFRYGEEKFSKQIAREIERVREKQPIETTGE 190

Query: 191 LSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I+  +   ++    HPA R FQA+RI VN+E+  + + L  A   L   G + V++
Sbjct: 191 LVEIIKTAIPAPARRKGGHPAKRIFQAIRIAVNDELGAVEESLEQAIDLLAKNGRISVIT 250

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPS-NAHPAVFQS----ITKKVVVPTQEDVAFNR 304
           FHSLEDR+VK  F   S     V+ + P     P  FQ     IT+K ++P+  +++ N 
Sbjct: 251 FHSLEDRIVKTMFKEYS----TVQDLPPGIPVVPEEFQPELKVITRKPILPSDSELSENN 306

Query: 305 RSRSAKLR 312
           RSRSAKLR
Sbjct: 307 RSRSAKLR 314


>gi|332358033|gb|EGJ35866.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus sanguinis SK1056]
          Length = 316

 Score =  169 bits (427), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 106/309 (34%), Positives = 175/309 (56%), Gaps = 14/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGS--NVIALDRDPFAVSCGQE 76
           H+ VLL + +  L   P  + +DAT G  G+S     ++G   ++ A D+D  A+   ++
Sbjct: 7   HITVLLHETVDQLAVKPDGIYVDATLGGAGHSEYLLSQLGDEGHLYAFDQDQTAIDNAKK 66

Query: 77  TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y E+   +  +  F  L+  + + GV   DG+ +DLGVSS Q+D  +RGFS+++  
Sbjct: 67  RLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQRERGFSYKQDA 126

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+  + ++A DVVN  + +DL RI    GE+K + +IA  I + R   P +TT +
Sbjct: 127 PLDMRMNREAALTAFDVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQARSVKPIETTTE 186

Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L+ +I K+   +K    + HPA + FQA+RI VN+E+    + ++ A   L   G + V+
Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGATDESIQQAIDLLAVDGRIAVI 245

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F   S   V      IP    P + + +++K ++P++E++  N R+ 
Sbjct: 246 TFHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKL-ELVSRKPILPSKEELESNNRAH 304

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 305 SAKLRVARK 313


>gi|261881137|ref|ZP_06007564.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Prevotella bergensis DSM 17361]
 gi|270332142|gb|EFA42928.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Prevotella bergensis DSM 17361]
          Length = 337

 Score =  169 bits (427), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 113/303 (37%), Positives = 164/303 (54%), Gaps = 18/303 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFA---VSC 73
           HVPVLL++ +  L+  P    +D TFG GG+SR   S      ++ + D+D  A   +S 
Sbjct: 38  HVPVLLKESVDGLDIKPDGTYVDVTFGGGGHSREILSRLHQDGHLYSFDQDADAEQNLSG 97

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130
             ET+    + F+  ++ F  L++++   GV   DG++ DLGVSS   D   RGFSF+  
Sbjct: 98  SGETL----DNFTFVRSNFRYLKNWMRYYGVEHIDGLLADLGVSSHHFDDEARGFSFRFD 153

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM+   G +A+DVVN    + L  I  + GE K + RIA  +VK R      TTQ
Sbjct: 154 APLDMRMNKRGGQTAADVVNNYEEEQLADIFYLYGELKSSRRIASVLVKERNQGKILTTQ 213

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           D  + +Q    F +        + FQALRI VN E+  L + L +A   L  GG L V++
Sbjct: 214 DFVNAVQPL--FRRGREKKDMAKLFQALRIEVNQEMAALREMLTAATDLLAPGGRLSVIT 271

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           +HSLEDR+VK    + + +    +        P  F+ +  KV+VP+ E++A N RSRSA
Sbjct: 272 YHSLEDRMVKNMMKTGNAEGKLRQDFFGRVECP--FRLVNNKVIVPSDEELARNPRSRSA 329

Query: 310 KLR 312
           KLR
Sbjct: 330 KLR 332


>gi|262195180|ref|YP_003266389.1| S-adenosyl-methyltransferase MraW [Haliangium ochraceum DSM 14365]
 gi|262078527|gb|ACY14496.1| S-adenosyl-methyltransferase MraW [Haliangium ochraceum DSM 14365]
          Length = 319

 Score =  169 bits (427), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 112/310 (36%), Positives = 179/310 (57%), Gaps = 21/310 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H+PVL E+V+A ++P PG V  D T G GG++ +     +    +  +DRD  A++  Q 
Sbjct: 9   HLPVLKEEVLAHMSPRPGGVYCDGTLGGGGHAGAVLARANPDGRLYGIDRDATALAAAQR 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + D+ E+    + T+    + + + G   +DG++ D+G SS Q D  +RGFSF + GP+
Sbjct: 69  ALADFGERVQFLRGTYGYADELLAEAGAPPLDGILLDIGPSSPQFDRAERGFSFLRPGPI 128

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM   SG +A D++ +    +L  IL   GEE+ + RIA  I    +    +TT DL+
Sbjct: 129 DMRMDQSSGETALDLMRRLGPGELADILWSFGEERFSKRIAARIKDAVRDHRLETTTDLA 188

Query: 193 SLIQKTVYFS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           +L++  +  S  +  + HPAT++FQALRI VN E+++LA+ LR     L  GG  +++SF
Sbjct: 189 ALVEDAIPASVRRQMKTHPATKTFQALRIAVNGELDQLARFLRVFPPLLAPGGRCVIISF 248

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI-------TKKVVVPTQEDVAFN 303
           HSLEDRLVK+ F     + +A    +P +   A  + I       T+K V  +++++A N
Sbjct: 249 HSLEDRLVKRAF-----RDLAWSSRLPPDLARAAGERIEPVCVPVTRKAVFASEDEIASN 303

Query: 304 RRSRSAKLRA 313
            R+RSA+LRA
Sbjct: 304 PRARSARLRA 313


>gi|25010349|ref|NP_734744.1| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae NEM316]
 gi|30173049|sp|Q8E782|RSMH_STRA3 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|23094701|emb|CAD45920.1| unknown [Streptococcus agalactiae NEM316]
 gi|319744247|gb|EFV96612.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus agalactiae ATCC 13813]
          Length = 315

 Score =  169 bits (427), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 105/308 (34%), Positives = 171/308 (55%), Gaps = 12/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQE 76
           H+ VLL + + +L+  P  + +DAT G  G+S     ++G +  + A D+D  A+     
Sbjct: 7   HITVLLHETVDMLDIKPDGIYVDATLGGAGHSEYLLSQLGPDGHLYAFDQDQKAIDNAHI 66

Query: 77  TMRDYKE--QFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            ++ Y +  Q +  +  F  L   +   GV   +G+ +DLGVSS Q+D  +RGFS+++  
Sbjct: 67  RLKKYVDTGQVTFIKDNFRNLSSNLKALGVSEINGICYDLGVSSPQLDERERGFSYKQDA 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+    ++A DVVN  +  DL RI    GE+K + +IA  I + R   P  TT +
Sbjct: 127 PLDMRMNREQSLTAYDVVNTYSYHDLVRIFFKYGEDKFSKQIARKIEQVRAEKPISTTTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I+ +    +   + HPA + FQA+RI VN+E+    + ++ A   L   G + V++
Sbjct: 187 LAEIIKSSKSAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDLLAVDGRISVIT 246

Query: 250 FHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDRL K+ F   S  +V      IP +  P + + + +K ++P+QE++  N R+ S
Sbjct: 247 FHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLQPKM-ELVNRKPILPSQEELEANNRAHS 305

Query: 309 AKLRAGMR 316
           AKLR   R
Sbjct: 306 AKLRVARR 313


>gi|290581041|ref|YP_003485433.1| hypothetical protein SmuNN2025_1515 [Streptococcus mutans NN2025]
 gi|254997940|dbj|BAH88541.1| conserved hypothetical protein [Streptococcus mutans NN2025]
          Length = 316

 Score =  169 bits (427), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 107/305 (35%), Positives = 170/305 (55%), Gaps = 14/305 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGS--NVIALDRDPFAVSCGQE 76
           H+ VLL + I +L+  P  + +DAT G  G+S     K+G   ++   D+D  A+   + 
Sbjct: 7   HITVLLHETIDMLDIKPDGIYVDATLGGAGHSECLLSKLGKEGHLYCFDQDQKAIDNAKI 66

Query: 77  TMRDYKE--QFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            ++ Y +  Q S  +  F  L+  + D+G+   DG+ +DLGVSS Q+D  +RGFS++K  
Sbjct: 67  RLQQYVKTGQVSFIKDNFRHLKSRLADEGIYEIDGICYDLGVSSPQLDERERGFSYKKDA 126

Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+    ++A DVVN  + +DL R+    GE+K + +IA  I   R+    +TT +
Sbjct: 127 PLDMRMNQDAQLTAFDVVNTYDYRDLVRLFFKYGEDKFSKQIARKIESARKEKLIETTAE 186

Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L+ +I K+   +K    + HPA + FQA+RI VN+E+    + L  A   L   G + V+
Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAAEESLTQALDLLALNGRIAVI 245

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F   +   V      +P N  P  F  + +K ++P   +++ N R+ 
Sbjct: 246 TFHSLEDRLTKQLFKEVTTLDVPKGLPFVPENLQPK-FSLVNRKPILPNVRELSENNRAH 304

Query: 308 SAKLR 312
           SAKLR
Sbjct: 305 SAKLR 309


>gi|326334986|ref|ZP_08201186.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325692791|gb|EGD34730.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 314

 Score =  169 bits (427), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 114/306 (37%), Positives = 167/306 (54%), Gaps = 19/306 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+PVLL + I  L   P    +DATFG GG+SR+     S+   +IA D+DP A     E
Sbjct: 7   HIPVLLSQTIEGLALNPEGTYVDATFGGGGHSRAILAQLSHNGRLIAFDQDPQAQGNIIE 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                 E+F L    F  ++ ++   GV   +GV+ D GVSS Q D   RGFS +   PL
Sbjct: 67  -----DERFMLIPQNFRYIKRFLRFYGVRQVEGVLADFGVSSYQFDTAQRGFSTRFEAPL 121

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+    +SA +VVN     +L+ +L   GE + A +IA  ++ +RQ +P +TT DL 
Sbjct: 122 DMRMNQEQPLSAFEVVNTYTESELSELLYRYGELRNAKQIARTLIAQRQISPIRTTMDLR 181

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           + +Q  +   K N++      +QA+RI VN E+  L + L    + +K GG + ++S+HS
Sbjct: 182 NAVQAFLPKGKENKVLAPL--YQAIRIEVNQELAALEEFLLQLPEVVKQGGRIALISYHS 239

Query: 253 LEDRLVKKFFASRSGKVMA-VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDRLVK+F   R G+     +     N  P   +    K +VP+ E++A N R+RSAKL
Sbjct: 240 LEDRLVKRFI--RDGQCSGEPQKDFYGNTFPPFVK--IGKPIVPSPEEIALNNRARSAKL 295

Query: 312 RAGMRT 317
           R   RT
Sbjct: 296 RIAERT 301


>gi|331703577|ref|YP_004400264.1| S adenosyl methyltransferase MraW [Mycoplasma mycoides subsp. capri
           LC str. 95010]
 gi|328802132|emb|CBW54286.1| S adenosyl methyltransferase MraW [Mycoplasma mycoides subsp. capri
           LC str. 95010]
          Length = 308

 Score =  169 bits (427), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 108/306 (35%), Positives = 164/306 (53%), Gaps = 21/306 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+PVLL++ I  LN  P  + +D T G  G+S    K  +    + A+D+D  A+   +E
Sbjct: 4   HIPVLLKESIEYLNIKPDGIYVDCTLGRAGHSSEILKRLNQKGFLYAIDQDQIAIDQAKE 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +      F L Q  FS L   +       VDG+++DLGVSS QID   RGFS++  GPL
Sbjct: 64  KLEQINNNFLLIQGNFSNLSALLAINHVFNVDGILYDLGVSSPQIDIASRGFSYKMDGPL 123

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL- 191
           DMRM   S ++A  V+N  +   ++ IL   GEE  +  I+  IV+ R   P  +T +L 
Sbjct: 124 DMRMDLNSTLTAHQVINTYSESQISEILFKYGEESFSKSISKKIVESR---PINSTLELV 180

Query: 192 ----SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
               S+L QK +   K    HPA ++FQALRI++NNE+  L   L+ A   L +   + V
Sbjct: 181 EIIKSALPQKVLKQKK----HPAKKTFQALRIYINNELIALENSLKQALDLLNSKARICV 236

Query: 248 VSFHSLEDRLVKKFFASRSGKVMA-VRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRR 305
           ++FHSLE+++VK  F + +      +   +P  A   + F+ + KK + P+  ++  N R
Sbjct: 237 ITFHSLEEKIVKNIFNNSTNYYQEQLLSNLPIKADLNSKFKLVIKKPIKPSLLELEQNHR 296

Query: 306 SRSAKL 311
           S SAKL
Sbjct: 297 SHSAKL 302


>gi|169348415|ref|ZP_02866353.1| hypothetical protein CLOSPI_00130 [Clostridium spiroforme DSM 1552]
 gi|169293884|gb|EDS76017.1| hypothetical protein CLOSPI_00130 [Clostridium spiroforme DSM 1552]
          Length = 309

 Score =  168 bits (426), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 103/303 (33%), Positives = 166/303 (54%), Gaps = 10/303 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQE 76
           DHV VLL + I  LN     + +D T G GG+S    K     ++   D+D  A+   ++
Sbjct: 3   DHVTVLLNEAIEGLNINEDGIYVDCTLGGGGHSCEILKRLTTGHLYCFDQDYTAIEAAKK 62

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + +  + +++  + F  +++ + +     VDG++FDLGVSS Q D G RGFS+     L
Sbjct: 63  RLSEISDNYTIIYSNFVNIKEKLEELNVHKVDGILFDLGVSSPQFDTGSRGFSYNYDARL 122

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  +  + A  +VN  + + L  IL    +EK A RIA  I + R + P +TT +L 
Sbjct: 123 DMRMDINNPLDAYYIVNNWSYEQLVEILFKYADEKFAKRIARKIEQARSNKPIETTFELV 182

Query: 193 SLIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I++ +  +   +  HPA R+FQALRI VN+E+    + L+ A   L + G + V++FH
Sbjct: 183 EIIKEAIPAAARRKGGHPAKRTFQALRIAVNDELNVFDRALKDALDLLNSKGRISVITFH 242

Query: 252 SLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLED++ K  F   ++   V     +IP +  P  ++ I KK +V + E++  N R+ SA
Sbjct: 243 SLEDKICKYTFNDVTKLKDVPPGLPVIPEHLLPK-YKLINKKAIVASDEELEMNHRAHSA 301

Query: 310 KLR 312
           KLR
Sbjct: 302 KLR 304


>gi|329954177|ref|ZP_08295272.1| S-adenosyl-methyltransferase MraW [Bacteroides clarus YIT 12056]
 gi|328528154|gb|EGF55134.1| S-adenosyl-methyltransferase MraW [Bacteroides clarus YIT 12056]
          Length = 305

 Score =  168 bits (426), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 106/307 (34%), Positives = 166/307 (54%), Gaps = 16/307 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H+PVLL   +  +N  P    +D TFG GG+SR        G  ++  D+D       Q 
Sbjct: 8   HIPVLLMPSVDGMNIRPDGTYVDVTFGGGGHSREIVSRLGEGGRLLGFDQDE---DAEQN 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + D    F+  ++ F  L +++   G   VD V+ DLGVSS   D  +RGFSF+  G L
Sbjct: 65  IVND--PHFTFVRSNFRYLHNFLRYHGIGQVDAVLADLGVSSHHFDDSERGFSFRFDGAL 122

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  +G++A+D+VN  + + L  I  + GE K + ++A  IVK R +    T  +  
Sbjct: 123 DMRMNKRAGLTAADIVNTYDEERLADIFYLYGELKNSRKLASVIVKARATRKIGTIGEFL 182

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I+    F +        + FQALRI VN E+E L + L +A +ALK GG L+V+++HS
Sbjct: 183 DIIKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLYAATEALKPGGRLVVITYHS 240

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK    + + +  A +    +   P  F+ +  KV++P  +++  N RSRSAKLR
Sbjct: 241 LEDRMVKNIMKTGNIEGKAEKDFFGNVQTP--FRLVNNKVIIPDDDEIERNPRSRSAKLR 298

Query: 313 AGMRTVE 319
              + ++
Sbjct: 299 IAEKIIK 305


>gi|152990774|ref|YP_001356496.1| S-adenosyl-methyltransferase MraW [Nitratiruptor sp. SB155-2]
 gi|262824663|sp|A6Q3T0|RSMH_NITSB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|151422635|dbj|BAF70139.1| S-adenosyl-methyltransferase MraW [Nitratiruptor sp. SB155-2]
          Length = 302

 Score =  168 bits (426), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 108/301 (35%), Positives = 172/301 (57%), Gaps = 17/301 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           H PVLL +V+       G  I+DAT G GG+S +  K   ++  + +D+D  A++  ++ 
Sbjct: 5   HKPVLLNEVLESFKDRKG-TIVDATLGYGGHSEALLKSNPDIKIVGIDQDSEAIAFSKQR 63

Query: 78  MRDYKEQFSLFQATFSQ-LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
           +  Y ++  + Q  F+  ++D +    V GV+ D+GVSS+Q+D  DRGFS   S  LDMR
Sbjct: 64  LASYGDRVQIIQGRFADVIEDILQTHDVQGVLADIGVSSLQLDKKDRGFSIH-SENLDMR 122

Query: 137 MSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M  +  +SA  VVN  + ++L RI    GE + + ++A AI+  R   P Q+   L+ + 
Sbjct: 123 MDQNAELSAYHVVNTYDEEELKRIFKEYGEIRHSGKLAKAIIHNR---PIQSATQLAEIA 179

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           QK     KN R+HPAT  FQA+RI VN E+++L   L + E+    G  + +++FHSLED
Sbjct: 180 QKI--LPKNKRVHPATTLFQAIRIEVNKELDQLKGLLDALERHKPKGAKVAIITFHSLED 237

Query: 256 RLVKKFFASRSGKVM----AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           R+VK+ F   +   +    A+R      A+ A+   +TKK +V + +++  N R+RSAKL
Sbjct: 238 RIVKQHFKEWAKSCICPPEAMR--CTCGANHALGNIVTKKPIVASIDELEENPRARSAKL 295

Query: 312 R 312
           R
Sbjct: 296 R 296


>gi|291459281|ref|ZP_06598671.1| S-adenosyl-methyltransferase MraW [Oribacterium sp. oral taxon 078
           str. F0262]
 gi|291418535|gb|EFE92254.1| S-adenosyl-methyltransferase MraW [Oribacterium sp. oral taxon 078
           str. F0262]
          Length = 308

 Score =  168 bits (426), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 109/299 (36%), Positives = 167/299 (55%), Gaps = 9/299 (3%)

Query: 23  VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETMR 79
           +LL + I  L      V +D T G GG++ S C+  S    +I +D+D  A+    E ++
Sbjct: 1   MLLRETIEGLAIRADGVYVDGTLGGGGHALSICERLSGRGRLIGIDQDGAAIEAASERLK 60

Query: 80  DYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
           DY+++  + +  +  + + +     + VDG+  DLGVSS Q+D G+RGFS++    LDMR
Sbjct: 61  DYRDRAVIVRGNYEDIAEILMRLQIERVDGICLDLGVSSYQLDEGERGFSYRTDAALDMR 120

Query: 137 MSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M   G  +A+D+VN  + + L RI+   GE+  A  IA  IV+ R+    +TT +LS +I
Sbjct: 121 MDQRGERTAADIVNSYSEEALFRIIRDYGEDHFARNIAKHIVQYREKKRIETTLELSGII 180

Query: 196 QKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
              +    +    HPA RSFQA+RI +N E+E L   L      L  GG L V+SFHSLE
Sbjct: 181 SGAIPARVRALSGHPAKRSFQAIRIELNRELEVLENTLDRMIDLLSEGGRLCVISFHSLE 240

Query: 255 DRLVK-KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           DR+VK KF  +    +      + S    +    +TKK ++P++E++  NRRS+SAKLR
Sbjct: 241 DRIVKSKFRTAEKPCICPPDFPVCSCGRKSRGIVLTKKPILPSEEELLENRRSQSAKLR 299


>gi|315638233|ref|ZP_07893415.1| S-adenosyl-methyltransferase MraW [Campylobacter upsaliensis JV21]
 gi|315481769|gb|EFU72391.1| S-adenosyl-methyltransferase MraW [Campylobacter upsaliensis JV21]
          Length = 304

 Score =  168 bits (426), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 105/299 (35%), Positives = 166/299 (55%), Gaps = 8/299 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           H+PVL ++V  L       + LD T G GG+S +  KM  N+  IA D+D  A+   +E 
Sbjct: 5   HIPVLPKEVNHLFEKLNEGLFLDCTLGYGGHSENLLKMHPNLHLIACDQDEEALQFSKER 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
           ++++  +  L+ + FSQ+ + +  K + G++ D+GVSS+ +D  +RGFS  +S  LDMRM
Sbjct: 65  LKEFDARIRLYHSNFSQILEQIDLKNLRGILADIGVSSLHLDKDERGFSL-RSNFLDMRM 123

Query: 138 SCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
             S  +SA DV+N  + + L  I  I GE K  + +A  I+K R      + ++L  ++ 
Sbjct: 124 DKSQSLSAFDVINTYSKEKLADIFKIYGELKDGAFLAEKIIKARAKKQIISAKELCEILG 183

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
            T    KN +I  A  +FQALRI VN E+E L   L+  EKA     +L ++ FHSLEDR
Sbjct: 184 NTRL--KNRKISQAILAFQALRIEVNKELEVLELFLQKLEKAHLRDCILAIICFHSLEDR 241

Query: 257 LVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           +VK +F   +   +     I     A+  + + ++KK + P +E++  N RS  AK+RA
Sbjct: 242 IVKNYFKKWAKACICDERAIRCECGANHNLGEILSKKPITPDKEEIKANPRSSCAKMRA 300


>gi|242060440|ref|XP_002451509.1| hypothetical protein SORBIDRAFT_04g003030 [Sorghum bicolor]
 gi|241931340|gb|EES04485.1| hypothetical protein SORBIDRAFT_04g003030 [Sorghum bicolor]
          Length = 445

 Score =  168 bits (426), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 121/346 (34%), Positives = 167/346 (48%), Gaps = 54/346 (15%)

Query: 20  HVPVLLEKVIALLN-PAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCG- 74
           HVPVLL +V+A    P P +  +D T GA G+S +  +    +   I +D DP A+  G 
Sbjct: 96  HVPVLLGEVLAAFRRPRPLRSFVDCTLGAAGHSLAMMEAHPELELYIGMDVDPSALEIGR 155

Query: 75  ----------------------QETMRDYK--EQFSLFQATFSQLQD--YVPDKGVDGVV 108
                                 QET+R Y   + F   +     + +   V   GVDG++
Sbjct: 156 GHIETFLAGREREANGREEDVLQETLRAYTHVKNFKYIKQVLGSVDESLAVGSSGVDGIL 215

Query: 109 FDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEK 167
            DLG+SSMQ++  +RGFS  + GPLDMRM     + A D++N     +L RIL   GEE 
Sbjct: 216 IDLGMSSMQVNRSNRGFSVLQDGPLDMRMDPKATLRAEDILNSWPEIELGRILREYGEES 275

Query: 168 QASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS--KNNRIHPATRSFQALRIFVNNEI 225
               +   IVK R +    +T DL  LIQ+    S  +   I  ATR FQALRI VN+E+
Sbjct: 276 NWQSVQKQIVKARATGGLHSTGDLVKLIQRMCSISSGRQGWIKTATRVFQALRIAVNDEL 335

Query: 226 EELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF-----------ASRSGKVMAVRH 274
             L   L S    L  GG L V+SFHSLEDR+VKK F                  +A+  
Sbjct: 336 RVLEDSLHSCFDCLATGGRLAVISFHSLEDRIVKKTFLELIHGGEADDEEDDKDDLALTD 395

Query: 275 MIPSNAHPAVFQSI--------TKKVVVPTQEDVAFNRRSRSAKLR 312
           ++  +  P   Q +        TK+ + P+QE+   N+R RSAKLR
Sbjct: 396 IVNED-EPWFGQRVQGRNGTVLTKRPITPSQEEEKLNQRCRSAKLR 440


>gi|298377152|ref|ZP_06987106.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 3_1_19]
 gi|298266136|gb|EFI07795.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 3_1_19]
          Length = 305

 Score =  168 bits (426), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 110/301 (36%), Positives = 168/301 (55%), Gaps = 17/301 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76
           HVPV+L + +  L+  P  + +D TFG GG+S    K +GS   +   D+D  A     E
Sbjct: 9   HVPVMLRESLEGLDIRPDGIYVDVTFGGGGHSCEILKRLGSEGELYGFDQDADA-----E 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  +F+  ++ F  L +++   G    VDG++ DLGVSS   D  DRGFSF+  G 
Sbjct: 64  HNIPADPRFTFVRSNFRYLYNFMRYYGESGEVDGLLADLGVSSHHFDDKDRGFSFRFDGA 123

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+  +G +A+D+VN    + L  +  + GE K + ++A  +VK R++   +T  D 
Sbjct: 124 LDMRMNTRAGQTAADIVNNYTAEALADVFYLYGELKVSRKLASVLVKARETKKIETIGDF 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             +I+   +  K+       + FQALRI VN+E+  L + LRS  + L+ GG L+V+++H
Sbjct: 184 LEVIKP--FTGKDKEKKFLAQVFQALRIEVNDEMRALKEMLRSTLRVLRPGGRLVVITYH 241

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDRLVK F  + + +    +    +   P  F+ +  KV+VPT E+V  N RSRSAKL
Sbjct: 242 SLEDRLVKNFLKTGNFEGKCEQDFFGNVRSP--FRLVNNKVIVPTDEEVERNPRSRSAKL 299

Query: 312 R 312
           R
Sbjct: 300 R 300


>gi|229829369|ref|ZP_04455438.1| hypothetical protein GCWU000342_01458 [Shuttleworthia satelles DSM
           14600]
 gi|229792532|gb|EEP28646.1| hypothetical protein GCWU000342_01458 [Shuttleworthia satelles DSM
           14600]
          Length = 318

 Score =  168 bits (426), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 105/316 (33%), Positives = 177/316 (56%), Gaps = 14/316 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H  V+L + I  L      + +D T G  G+SR      S    +I +D+D  A++ G+E
Sbjct: 5   HYSVMLRETIDALAVKSDGIYVDGTMGGAGHSRQIASRLSGRGRLICIDQDADAIAAGKE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++D+ ++ ++ ++ + +++  + + G   V+G++ DLGVSS Q+D  +RGFS+   G L
Sbjct: 65  KLKDFSDRVTIVRSNYERMRQILEELGIASVNGILLDLGVSSYQLDTPERGFSYMDEGAL 124

Query: 134 -DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
            DMRM C    +A D+VN+ + ++L R++   GE++ A  IA  IV  RQ    +T  +L
Sbjct: 125 LDMRMDCRNPRTARDIVNEYSERELFRMIRNYGEDRFAKNIAKNIVLARQEKTIETVGEL 184

Query: 192 SSLIQKTVYFSKNNRI---HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           + +I+++V   +  ++   HPA R++QA+RI +N E++ L   +      L  GG   V+
Sbjct: 185 NEVIRRSV--PRKIQVTGGHPAKRTYQAIRIELNRELDVLRDHIDEMIDLLADGGRFAVI 242

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           SFHSLEDR+VK  F +     +      +      +  + IT+K ++P +E++A N RSR
Sbjct: 243 SFHSLEDRIVKNAFQTAEDPCICPPEFPVCVCGRKSKGRVITRKPILPGKEELAENHRSR 302

Query: 308 SAKLRAGMRTVERSIE 323
           SAKLR   R V R  E
Sbjct: 303 SAKLRVFERRVVREEE 318


>gi|313106950|ref|ZP_07793153.1| putative methyltransferase [Pseudomonas aeruginosa 39016]
 gi|310879655|gb|EFQ38249.1| putative methyltransferase [Pseudomonas aeruginosa 39016]
          Length = 247

 Score =  168 bits (426), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 102/238 (42%), Positives = 150/238 (63%), Gaps = 12/238 (5%)

Query: 84  QFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS- 138
           +F + Q +F++L D V  +G    VDGV+ DLGVSS Q+D  +RGFSF   GPLDMRM+ 
Sbjct: 7   RFVIVQRSFAELGDEVRARGLEGRVDGVLLDLGVSSPQLDDPERGFSFLNDGPLDMRMNP 66

Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198
             GISA++ +  A  +++ R+    GEE+ A R+A AIV+RRQ  PF+ T DL+ +I   
Sbjct: 67  GQGISAAEFIANAAEEEIARVFKEYGEERFAKRMARAIVQRRQERPFERTADLAEVITVA 126

Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258
               +  + +PATR+FQ LRI VNNE+ +L +GL +A ++L  GG L+V+SFHSLEDR+V
Sbjct: 127 NPAWEKGK-NPATRAFQGLRIHVNNELGDLERGLDAALESLAVGGRLVVISFHSLEDRIV 185

Query: 259 KKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVP---TQEDVAFNRRSRSAKLR 312
           K F    + G+   +   +P  +   VF+   K +  P   ++E++  N RSRSA +R
Sbjct: 186 KLFMRKHAKGEADNLPRDLPIRSK--VFEPRLKLLGKPQYASEEELKANPRSRSAVMR 241


>gi|295109202|emb|CBL23155.1| S-adenosyl-methyltransferase MraW [Ruminococcus obeum A2-162]
          Length = 314

 Score =  168 bits (426), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 102/302 (33%), Positives = 169/302 (55%), Gaps = 9/302 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H  VLL++ I  L+  P  + +D T G  G++   C+  S     I +D+D  A+    E
Sbjct: 5   HKSVLLDETIEGLSIRPDGIYVDGTLGGAGHASEVCQRLSAKGRFIGIDQDQDAIIAASE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  Y+++ ++ ++ +  + + + + G   V+G+V DLGVSS Q+D  +RGF+++   PL
Sbjct: 65  RLAAYEDRVTIIRSNYCYMVNELKNLGIQKVNGIVLDLGVSSYQLDNEERGFTYRVDAPL 124

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM      +A+D+VN  + K+L RI+   GE+K A  IA  IV  R  AP QTT +L+
Sbjct: 125 DMRMDQRQSRTAADIVNGYDEKELYRIIRDYGEDKFAKNIAKHIVAARAKAPIQTTGELT 184

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I++++    +    HPA R+FQA+RI +N E++ L + L      L  GG + +++FH
Sbjct: 185 EIIRQSIPMKIQATGGHPAKRTFQAIRIELNRELDVLRESLDGMIDLLDDGGRICIITFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK  F              +      +  + IT+K ++P+  ++  N RS+SAK
Sbjct: 245 SLEDRIVKTIFRKNENPCTCPPDFPVCVCGKESKGKVITRKPILPSAVEMEENPRSKSAK 304

Query: 311 LR 312
           LR
Sbjct: 305 LR 306


>gi|325686943|gb|EGD28967.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus sanguinis SK72]
          Length = 316

 Score =  168 bits (425), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 106/309 (34%), Positives = 175/309 (56%), Gaps = 14/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGS--NVIALDRDPFAVSCGQE 76
           H+ VLL + +  L   P  + +DAT G  G+S     ++G   ++ A D+D  A+   ++
Sbjct: 7   HITVLLHETVDQLAVKPDGIYVDATLGGAGHSEYLLSQLGDEGHLYAFDQDQTAIDNAKK 66

Query: 77  TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y E+   +  +  F  L+  + + GV   DG+ +DLGVSS Q+D  +RGFS+++  
Sbjct: 67  RLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQRERGFSYKQDA 126

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+  + ++A DVVN  + +DL RI    GE+K + +IA  I + R   P +TT +
Sbjct: 127 PLDMRMNREAALTAFDVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQARSIKPIETTTE 186

Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L+ +I K+   +K    + HPA + FQA+RI VN+E+    + ++ A   L   G + V+
Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDLLAVDGRIAVI 245

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F   S   V      IP    P + + +++K ++P++E++  N R+ 
Sbjct: 246 TFHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKL-ELVSRKPILPSKEELESNNRAH 304

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 305 SAKLRVARK 313


>gi|253580157|ref|ZP_04857424.1| MraW methylase MraW [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848676|gb|EES76639.1| MraW methylase MraW [Ruminococcus sp. 5_1_39BFAA]
          Length = 311

 Score =  168 bits (425), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 108/307 (35%), Positives = 165/307 (53%), Gaps = 20/307 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H  VLLE+ I  L+  P  + +D T G  G++   C+  S     I +D+D  A+    E
Sbjct: 5   HKSVLLEETIEGLDIKPDGIYVDGTLGGAGHAGEVCRKLSAKGRFIGIDQDQDAIIAASE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  YK Q ++ ++ +  +   +  +G   VDG++ DLGVSS Q+D  +RGF+++   PL
Sbjct: 65  RLAPYK-QATIIRSNYCYMVQELAARGIYKVDGILLDLGVSSYQLDNEERGFTYRVDAPL 123

Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM      +A D+VN    K+L RI+   GE+K A  IA  IV  RQ  P  TT +L+
Sbjct: 124 DMRMDQRQTQTAGDIVNGYEEKELYRIIRDYGEDKFAKNIAKHIVAARQVKPITTTGELT 183

Query: 193 SLIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I++++      +  HPA R+FQA+RI +N E++ L   L      L  GG L +++FH
Sbjct: 184 EIIRESIPMKMQVKSGHPAKRTFQAIRIELNRELDVLRDSLDGMIDILDDGGRLCIITFH 243

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF------QSITKKVVVPTQEDVAFNRR 305
           SLEDR+VK  F              PS+    V       + IT+K ++P + ++  N R
Sbjct: 244 SLEDRIVKTIFRKNENPCTC-----PSDFPVCVCGKKSKGKVITRKPILPGETEMEENPR 298

Query: 306 SRSAKLR 312
           S+SAKLR
Sbjct: 299 SKSAKLR 305


>gi|78188031|ref|YP_378369.1| methyltransferase [Chlorobium chlorochromatii CaD3]
 gi|88909192|sp|Q3ANW1|RSMH_CHLCH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|78170230|gb|ABB27326.1| methyltransferase [Chlorobium chlorochromatii CaD3]
          Length = 328

 Score =  168 bits (425), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 112/334 (33%), Positives = 186/334 (55%), Gaps = 30/334 (8%)

Query: 12  AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--------GSNVIA 63
           A+H T   H PVL  +V+A L    G + +D T G G +S +  +          S +I 
Sbjct: 2   ALHDTY--HDPVLAAEVVATLVQRSG-IYVDGTLGGGSHSLALLQALQAQGLLESSLLIG 58

Query: 64  LDRDPFAVSCGQETMRDYKEQFSLFQATF----SQLQDYVPDKG----VDGVVFDLGVSS 115
           +D+D  A++   E ++ ++    L +  F    S +Q     +G    V GV+ DLGVSS
Sbjct: 59  IDQDSDALAMAAERLQAWQPYTRLLKGNFRDMASLVQQLCDAEGRACAVTGVLLDLGVSS 118

Query: 116 MQIDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAH 174
            Q+D  +RGFS+ +SGPLDMRM  +  ++A++++N A+  +L RI    GEE ++  +A 
Sbjct: 119 FQLDTAERGFSYMRSGPLDMRMDNTAPLTAAELINHADEAELARIFYHYGEEPRSRALAR 178

Query: 175 AIVKRRQS-APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLR 233
           A+V++R+    F TT++L++L+++  +  +   I   +R FQALRI VN+E+  L + L 
Sbjct: 179 AVVQQREKMGNFTTTEELAALVRRLTHGGEKAVIKTLSRLFQALRIAVNDELGALHEVLE 238

Query: 234 SAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSG-----KVMAVRHMIPSNAHPAVFQSI 288
            A + L   G L V+S+HSLEDR+VK FF   +      K +A+R  +   A       +
Sbjct: 239 GALELLDGNGRLAVMSYHSLEDRVVKHFFTHHAQCDWGPKGVALREPLSQGA----LTIV 294

Query: 289 TKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSI 322
           TK+ ++ + +++  N R+RSAKLR   +   ++I
Sbjct: 295 TKRPMLASADEIERNPRARSAKLRVAAKNQPKTI 328


>gi|300309670|ref|YP_003773762.1| S-adenosyl-methionine-dependent methyltransferase MraW protein
           [Herbaspirillum seropedicae SmR1]
 gi|300072455|gb|ADJ61854.1| S-adenosyl-methionine-dependent methyltransferase MraW protein
           [Herbaspirillum seropedicae SmR1]
          Length = 324

 Score =  168 bits (425), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 115/304 (37%), Positives = 179/304 (58%), Gaps = 16/304 (5%)

Query: 20  HVPVLLEKVI---ALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSC 73
           H  VLLE+ +   A+       V LD TFG GG+SR+   ++G    +IA D+DP A++ 
Sbjct: 11  HRTVLLEEAVDALAIEGERANGVYLDGTFGRGGHSRAILSRLGPQGRLIAFDKDPLAIAT 70

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            Q+       +F +   +F+ +   + ++G   VDGV+ DLG+SS Q+D   RGFSF+  
Sbjct: 71  AQKI---ADPRFEIVHDSFATMDQALAERGIARVDGVLMDLGISSPQVDDAARGFSFRLD 127

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
           GPLDMRM  + G+SA++ +  A+ + + +++   GEE+ A +IA  IV  R   P  +T+
Sbjct: 128 GPLDMRMDTTRGVSAAEWLATADEQQIAKVIRDYGEERFALQIAKKIVAGRAVEPISSTR 187

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            L++L+ + V   +  +  PATR+FQA+RIFVN E+EEL  GL  A   +   G L+V+S
Sbjct: 188 QLAALVAQAVKTREKGK-DPATRTFQAVRIFVNQELEELEVGLEKAFAQMAQHGRLVVIS 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK+F AS++      R + I +   P     +  + V+P+  +V  N R+RS
Sbjct: 247 FHSLEDRIVKQFMASKAHAPQPDRRLPIRAVDLPQAPARLLPR-VMPSAGEVEANPRARS 305

Query: 309 AKLR 312
           A +R
Sbjct: 306 AVMR 309


>gi|42559426|sp|P60397|RSMH_ONYPE RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 304

 Score =  168 bits (425), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 105/306 (34%), Positives = 166/306 (54%), Gaps = 16/306 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76
           +H+ VL ++ I  L   P  + +DAT G  G++     +     + + D+D  A +  ++
Sbjct: 7   NHISVLKQEAIDFLKIKPEGIYVDATLGQCGHTIEIANLLQQGFLYSFDQDVEACTNAKK 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  +     +  + FS L+  +  + V   DG++FDLG+SS QID   RGFS+  + PL
Sbjct: 67  ILPPHLP-IEIIHSNFSHLKTQLAQRNVFQLDGILFDLGLSSCQIDNPQRGFSYLHNTPL 125

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+ +  I+A  ++N  +   L  I  + GE K A+ +A  I+K+R   P  T+ DL 
Sbjct: 126 DMRMNVNQTITAQYILNNYSFAQLKNIFKVYGEVKNAALVASEIIKQR---PLCTSYDLV 182

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           ++  +   F    + H A + FQALRI VN E+E L Q L  +   LK   +++V+SFHS
Sbjct: 183 AITDR---FCNRQKGHSAKKIFQALRIEVNQELESLKQALEQSLDLLKPNAMIVVISFHS 239

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-FQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK FF   S  V+  +  +P    P      ITKK  +P++E++  N RS SAKL
Sbjct: 240 LEDRIVKHFFKKNSTFVLPKK--MPITIMPQTPLSIITKKAFLPSEEEMQNNSRSISAKL 297

Query: 312 RAGMRT 317
           R  ++ 
Sbjct: 298 RVAVKN 303


>gi|39939221|ref|NP_950987.1| hypothetical protein PAM_735 [Onion yellows phytoplasma OY-M]
 gi|39722330|dbj|BAD04820.1| conserved hypothetical protein [Onion yellows phytoplasma OY-M]
          Length = 342

 Score =  168 bits (425), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 106/313 (33%), Positives = 170/313 (54%), Gaps = 16/313 (5%)

Query: 12  AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPF 69
           +++ T  +H+ VL ++ I  L   P  + +DAT G  G++     +     + + D+D  
Sbjct: 38  SMNKTHFNHISVLKQEAIDFLKIKPEGIYVDATLGQCGHTIEIANLLQQGFLYSFDQDVE 97

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFS 126
           A +  ++ +  +     +  + FS L+  +  + V   DG++FDLG+SS QID   RGFS
Sbjct: 98  ACTNAKKILPPHLP-IEIIHSNFSHLKTQLAQRNVFQLDGILFDLGLSSCQIDNPQRGFS 156

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           +  + PLDMRM+ +  I+A  ++N  +   L  I  + GE K A+ +A  I+K+R   P 
Sbjct: 157 YLHNTPLDMRMNVNQTITAQYILNNYSFAQLKNIFKVYGEVKNAALVASEIIKQR---PL 213

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            T+ DL ++  +   F    + H A + FQALRI VN E+E L Q L  +   LK   ++
Sbjct: 214 CTSYDLVAITDR---FCNRQKGHSAKKIFQALRIEVNQELESLKQALEQSLDLLKPNAMI 270

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-FQSITKKVVVPTQEDVAFNR 304
           +V+SFHSLEDR+VK FF   S  V+  +  +P    P      ITKK  +P++E++  N 
Sbjct: 271 VVISFHSLEDRIVKHFFKKNSTFVLPKK--MPITIMPQTPLSIITKKAFLPSEEEMQNNS 328

Query: 305 RSRSAKLRAGMRT 317
           RS SAKLR  ++ 
Sbjct: 329 RSISAKLRVAVKN 341


>gi|78778559|ref|YP_396671.1| methyltransferase [Prochlorococcus marinus str. MIT 9312]
 gi|123554751|sp|Q31D10|RSMH_PROM9 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|78712058|gb|ABB49235.1| methyltransferase [Prochlorococcus marinus str. MIT 9312]
          Length = 300

 Score =  168 bits (425), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 110/312 (35%), Positives = 170/312 (54%), Gaps = 42/312 (13%)

Query: 19  DHVPVLLEKVIALLNPAPGKVI-------LDATFGAGGYSRSFCKMGSN--VIALDRDPF 69
           +H  V+ ++++A L   P  +I       +DAT G GG+S    +  S+  +I LD+DPF
Sbjct: 12  NHKSVMTDEILASLEHYP--LIHNNQLKGIDATLGGGGHSYHLLRKYSDLHIIGLDQDPF 69

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
           A     + + ++K +  +  A F+   D+ P + V  V+ DLGV+S QID   RGFSFQK
Sbjct: 70  ARKSASKKLDEFKNRIDIRAANFA---DFEPKEKVSFVIADLGVNSNQIDDPKRGFSFQK 126

Query: 130 SGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI-VKRRQSAPFQT 187
            GPLDMRM+    + A  ++     KDL  ++   G+E+ + +IA  I +  + +  +  
Sbjct: 127 DGPLDMRMNPFLEVDAEKLIETLQEKDLANLIYKYGDERLSRKIARKIKMDLKVNGKYSG 186

Query: 188 TQDLSSLIQ-----KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           T++L+  I      K  Y     +IHPATR+FQALRI VN EIE L + L+     L  G
Sbjct: 187 TKELAYSIAGCFPPKQRY----KKIHPATRTFQALRIAVNKEIEVLEKFLQIVPDWLLPG 242

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G++ ++SFHSLEDRLVK  F +                     +++TKK + P++++V  
Sbjct: 243 GIISIISFHSLEDRLVKSSFKNDQR-----------------LKNLTKKPITPSEQEVEI 285

Query: 303 NRRSRSAKLRAG 314
           N+R+RS KLR  
Sbjct: 286 NKRARSGKLRVA 297


>gi|323440951|gb|EGA98658.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus O11]
 gi|323442268|gb|EGA99898.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus O46]
          Length = 304

 Score =  168 bits (425), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 101/301 (33%), Positives = 162/301 (53%), Gaps = 11/301 (3%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETMRD 80
           +L + I  LN     V +D T G  G++       ++   +IA+D+D  A+   +E ++D
Sbjct: 1   MLNETIDYLNVKENGVYIDCTLGGAGHALYLLNQLNDDGRLIAIDQDQTAIDNAKEVLKD 60

Query: 81  YKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
           +  + +   + F +L   + D   + VDG+ +DLGVSS Q+D  +RGFS+     LDMRM
Sbjct: 61  HLHKVTFVHSNFRELTQILKDLNIEKVDGIYYDLGVSSPQLDIPERGFSYHHDATLDMRM 120

Query: 138 S-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
                ++A ++VN  + + L +I    GEEK + +IA  I   R+  P  TT +L  +I+
Sbjct: 121 DQTQELTAYEIVNNWSYEALVKIFYRYGEEKFSKQIARRIEAHREQQPITTTLELVDIIK 180

Query: 197 KTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           + +   ++    HPA R FQALRI VN+E+      +  A + +K GG + V++FHSLED
Sbjct: 181 EGIPAKARRKGGHPAKRVFQALRIAVNDELSAFEDSIEQAIELVKVGGRISVITFHSLED 240

Query: 256 RLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           RL K+ F          R +  IP    P + + + +K +  T+ED+  N R+RSAKLR 
Sbjct: 241 RLCKQVFQEYEKGPEVPRGLPVIPEAYTPKL-KRVNRKPITATEEDLDDNNRARSAKLRV 299

Query: 314 G 314
            
Sbjct: 300 A 300


>gi|255320234|ref|ZP_05361419.1| S-adenosyl-methyltransferase MraW [Acinetobacter radioresistens
           SK82]
 gi|262380450|ref|ZP_06073604.1| MraW methylase [Acinetobacter radioresistens SH164]
 gi|255302673|gb|EET81905.1| S-adenosyl-methyltransferase MraW [Acinetobacter radioresistens
           SK82]
 gi|262297896|gb|EEY85811.1| MraW methylase [Acinetobacter radioresistens SH164]
          Length = 303

 Score =  168 bits (425), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 115/310 (37%), Positives = 166/310 (53%), Gaps = 24/310 (7%)

Query: 20  HVPVLL-EKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPFAVSCGQ 75
           H+ VLL E V A+L      + +DATFG GG+SR         + V A D+DP A++   
Sbjct: 3   HISVLLHETVAAVLAERNTGIYVDATFGRGGHSRELLAQLNTDAQVYAFDKDPQALAVAA 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E +     +F +  A+F+ L+  +   G   VDG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 63  E-LEQQDARFKIIHASFADLKQELEKIGITEVDGIMADLGVSSPQLDQAERGFSFMQDGP 121

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G +A++ +     + L  I+   GEE+ + R+A AI   +Q+    TT  L
Sbjct: 122 LDMRMDNSQGQTAAEWLVNIEEEALANIIYQYGEERYSRRLARAI---KQAGYIATTGQL 178

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + L+ K  +       HPATR+FQA+RI +N E+E++   L  A   LK  G L V+SFH
Sbjct: 179 AELV-KAAHPKWEKHKHPATRTFQAIRIAINKELEDIELFLPQAVDILKPHGRLAVISFH 237

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV-----VVPTQEDVAFNRRS 306
           SLEDRL+K+F    S         +P        Q  T+++     +  +  +V  N RS
Sbjct: 238 SLEDRLIKQFIQKESSLAEDSGWGMPQ------IQQDTRRLKKISRIKASDAEVKENPRS 291

Query: 307 RSAKLRAGMR 316
           RSA LR   R
Sbjct: 292 RSAWLRVAER 301


>gi|262377037|ref|ZP_06070263.1| MraW methylase [Acinetobacter lwoffii SH145]
 gi|262308075|gb|EEY89212.1| MraW methylase [Acinetobacter lwoffii SH145]
          Length = 303

 Score =  168 bits (425), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 118/310 (38%), Positives = 168/310 (54%), Gaps = 24/310 (7%)

Query: 20  HVPVLLEKVI-ALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQ 75
           H+ VLL + I ALL        +D TFG GG++R    K+  N  V A D+DP A++   
Sbjct: 3   HISVLLHETIDALLAGRNTGTYVDGTFGRGGHTRLLLSKLDENARVYAFDKDPQALAVAA 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E +     +F +  A+F+ L+D + + G   VDGV+ DLGVSS Q+D  +RGFSF K GP
Sbjct: 63  E-LEQEDSRFKIIHASFADLKDALAELGIEHVDGVMADLGVSSPQLDQAERGFSFMKDGP 121

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G +A++ + Q   + L  I+   GEE+ + RIA AI   + +    TT  L
Sbjct: 122 LDMRMDNSQGPTAAEWLTQIEEEALANIIFKYGEERYSRRIAKAI---KAAGYIDTTAKL 178

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++ K  +       H ATR+FQA+RI +N E+E++   L  A + LK    L V+SFH
Sbjct: 179 AEIV-KVAHPKWEKNKHAATRTFQAIRIAINKELEDIEIFLPQAVEILKPEARLAVISFH 237

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV-----VVPTQEDVAFNRRS 306
           SLEDRL+K+F    S         +P        Q  T+++     V  + E+V  N RS
Sbjct: 238 SLEDRLIKQFIQKESTLEEDSGWGMPQQ------QKDTRRLKKVSRVKASDEEVKANPRS 291

Query: 307 RSAKLRAGMR 316
           RSA LR   R
Sbjct: 292 RSAWLRVAER 301


>gi|323350327|ref|ZP_08085992.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus sanguinis VMC66]
 gi|322123512|gb|EFX95183.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus sanguinis VMC66]
          Length = 316

 Score =  167 bits (424), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 105/309 (33%), Positives = 175/309 (56%), Gaps = 14/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGS--NVIALDRDPFAVSCGQE 76
           H+ VLL + +  L   P  + +DAT G  G+S     ++G   ++ A D+D  A+   ++
Sbjct: 7   HITVLLHETVDQLAVKPDGIYVDATLGGAGHSEYLLSQLGDEGHLYAFDQDQMAIDNAKK 66

Query: 77  TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y E+   +  +  F  L+  + + GV   DG+ +DLGVSS Q+D  +RGFS+++  
Sbjct: 67  RLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQRERGFSYKQDA 126

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+  + ++A +VVN  + +DL RI    GE+K + +IA  I + R   P +TT +
Sbjct: 127 PLDMRMNREAALTAFEVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQARSVKPIETTTE 186

Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L+ +I K+   +K    + HPA + FQA+RI VN+E+    + ++ A   L   G + V+
Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDLLAVDGRIAVI 245

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F   S   V      IP    P + + +++K ++P++E++  N R+ 
Sbjct: 246 TFHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKL-ELVSRKPILPSKEELESNNRAH 304

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 305 SAKLRVARK 313


>gi|218281029|ref|ZP_03487608.1| hypothetical protein EUBIFOR_00167 [Eubacterium biforme DSM 3989]
 gi|218217710|gb|EEC91248.1| hypothetical protein EUBIFOR_00167 [Eubacterium biforme DSM 3989]
          Length = 308

 Score =  167 bits (424), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 106/302 (35%), Positives = 161/302 (53%), Gaps = 7/302 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQE 76
           +H+ VLL + I +L      + +D T G GG+S    K     ++ A D D  A+     
Sbjct: 2   EHISVLLNESIDMLQIKEDGIYVDCTLGRGGHSSEILKRLTSGHLYAFDCDQNAIDESMP 61

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++   +QF+L  + F  L+  +  +GV   DG+  DLGVSS Q D   RGFS++    L
Sbjct: 62  RLKAIGDQFTLIHSPFENLKSELAKRGVNFVDGIFMDLGVSSPQFDDAQRGFSYRWDARL 121

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  S  + A  VVN  + +DL RIL   GEE  A +IA  I K R+ AP +TT +L 
Sbjct: 122 DMRMDQSQELDAYVVVNTYDKEDLIRILKRYGEEPFAQKIADKICKAREIAPIETTFELV 181

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  +  +    + HPA ++FQA+RI VN+E+E+L   L      L   G + V++FH
Sbjct: 182 DVIKSALPAAVLRKKGHPAKQTFQAIRIEVNHELEQLETVLHDGLTMLNPHGRMAVITFH 241

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+VK+ F   +      + +         +Q + +K V+ + E++  N R+ SAKL
Sbjct: 242 SLEDRIVKEIFKEVAVAKKVNKRLPQVGTENLEYQLVNRKPVLASSEELEMNNRAHSAKL 301

Query: 312 RA 313
           R 
Sbjct: 302 RG 303


>gi|227488521|ref|ZP_03918837.1| S-adenosyl-methyltransferase MraW [Corynebacterium glucuronolyticum
           ATCC 51867]
 gi|227091415|gb|EEI26727.1| S-adenosyl-methyltransferase MraW [Corynebacterium glucuronolyticum
           ATCC 51867]
          Length = 354

 Score =  167 bits (424), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 107/321 (33%), Positives = 172/321 (53%), Gaps = 24/321 (7%)

Query: 20  HVPVLLEKVIALL------NPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAV 71
           HVPVL ++++ LL      + A G +++D T GAGG++        N  VI +DRD  A+
Sbjct: 31  HVPVLRDRMVELLRRGIAVDGATG-IVVDGTLGAGGHTEHLLATDPNARVIGVDRDAQAL 89

Query: 72  SCGQETMRDYKEQFSLFQATFSQL------------QDYVPDKGVDGVVFDLGVSSMQID 119
                 +  + ++F      F +             Q+   D G+ G +FDLGVSSMQ+D
Sbjct: 90  KDATARLAPFGDRFVGLNVRFDEWMEAASCSSHPLCQEAAAD-GISGALFDLGVSSMQLD 148

Query: 120 CGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178
             +RGF+++   PLDMRM  S GI+A+DV+N  +  DL R+L   GEEK A +IA A+++
Sbjct: 149 QEERGFAYKIDAPLDMRMDPSRGITAADVLNTYSHGDLARVLKTYGEEKFAGKIASAVIR 208

Query: 179 RRQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
            R+  PF  +  L  L+  T+   ++ +  HPA R+FQALR+ VN E+  L Q +     
Sbjct: 209 EREKEPFTRSGRLVELLYDTIPAPARRHGGHPAKRTFQALRVEVNQELRALEQVIPVTAD 268

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297
           AL  GG+++ +S+ SLED++VKK  A  +         +        F  +T+     ++
Sbjct: 269 ALHVGGVMVFMSYQSLEDKIVKKALAKLTTSTNPPGLPVDLPGTEPHFALVTRGSEKASK 328

Query: 298 EDVAFNRRSRSAKLRAGMRTV 318
           +++  N R+ S ++RA  R +
Sbjct: 329 KEIDQNPRAASVRVRAAQRVL 349


>gi|289766581|ref|ZP_06525959.1| methyltransferase [Fusobacterium sp. D11]
 gi|289718136|gb|EFD82148.1| methyltransferase [Fusobacterium sp. D11]
          Length = 314

 Score =  167 bits (424), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 109/313 (34%), Positives = 176/313 (56%), Gaps = 20/313 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+PVL  + +  L   P  + +D T G G +S    +  S+   +I++D+D  A+   ++
Sbjct: 9   HIPVLYYETLDNLVINPDGIYIDCTLGGGSHSEGILERLSDKGLLISIDQDINAIEYSKK 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  +  ++ +F+  F  +       GVD   G++ D+GVSS Q+D  +RGFS++    L
Sbjct: 69  RLEKFGSKWKVFKGNFENIDTIAYMAGVDKVDGILMDIGVSSKQLDDPERGFSYRYDVKL 128

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+    ISA DVVN  + + L++I+   GEE+ A +IA  I++ R+S+P + T DL 
Sbjct: 129 DMRMNTEQKISAYDVVNTYSEEQLSKIIFEYGEERHARKIAKLILEERKSSPIEKTSDLI 188

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +LI++   + +    HPA ++FQA+RI VN E+E L   +  A + LK GG L +++FHS
Sbjct: 189 TLIKRA--YPERASKHPAKKTFQAIRIEVNRELEVLENAISKAAELLKVGGRLAIITFHS 246

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV------FQSITKKVVVPTQEDVAFNRRS 306
           LEDR+VK  F     K +A     P +    V      F+ ITKK ++P   ++  N RS
Sbjct: 247 LEDRIVKNKF-----KDLATACKCPKDIPICVCGGVKKFEIITKKPIIPIDNELKNNNRS 301

Query: 307 RSAKLRAGMRTVE 319
            S+KLR   R ++
Sbjct: 302 HSSKLRILERILD 314


>gi|212551099|ref|YP_002309416.1| S-adenosyl-methyltransferase MraW [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|226709918|sp|B6YS33|RSMH_AZOPC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|212549337|dbj|BAG84005.1| S-adenosyl-methyltransferase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 304

 Score =  167 bits (424), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 110/309 (35%), Positives = 175/309 (56%), Gaps = 20/309 (6%)

Query: 11  SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGS--NVIALDRD 67
           ++++H    H+PVLL++ +  LN   G + +D TFG GG+S+    ++G+  ++   D+D
Sbjct: 4   TSVYH----HIPVLLKESVDGLNVCSGGIYVDVTFGGGGHSKEILVRLGNTGHLYGFDQD 59

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQL---QDYVPDKGVDGVVFDLGVSSMQIDCGDRG 124
                  +    D +  F+  ++ F  L    D+   K +DG++ DLGVSS+  D  +RG
Sbjct: 60  E---DSEKNIFSDIR--FTFVRSNFRYLAHFMDWHNVKEIDGLLADLGVSSIHFDDCNRG 114

Query: 125 FSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           FSF+  G LDMRM+   G +A+D++N  +   L  +  + GE K ++ IAHAIV+ R   
Sbjct: 115 FSFRFIGNLDMRMNQRKGETAADILNTYSENKLIDMFDLYGELKNSASIAHAIVQARMQR 174

Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
             QT QD   +++  V   K  +     + FQALRI VN E++ L + L  A++ L++GG
Sbjct: 175 EIQTVQDFLDILKPFVRKGKVEK--QLAQIFQALRIEVNKELDALKEMLIQAKQLLRSGG 232

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            + ++++HSLEDRLVK FF + S      R    +   P  F+ I  +V+V + E+V  N
Sbjct: 233 RIAIITYHSLEDRLVKFFFKTGSFYEKIERDFYGNFLSP--FKIINHRVIVASDEEVKRN 290

Query: 304 RRSRSAKLR 312
            RSRSAKLR
Sbjct: 291 PRSRSAKLR 299


>gi|319892166|ref|YP_004149041.1| rRNA small subunit methyltransferase H [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317161862|gb|ADV05405.1| rRNA small subunit methyltransferase H [Staphylococcus
           pseudintermedius HKU10-03]
 gi|323464735|gb|ADX76888.1| S-adenosyl-methyltransferase MraW [Staphylococcus pseudintermedius
           ED99]
          Length = 311

 Score =  167 bits (424), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 105/304 (34%), Positives = 164/304 (53%), Gaps = 9/304 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+ VLL++ +  LN     V +D T G  G+S+      S+   +IA+D+D  A++  +E
Sbjct: 4   HISVLLKETVDQLNIKEDGVYVDCTLGGAGHSQYLLNQLSDEGRLIAIDQDMTAINHAKE 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++    + +     F  L + + +     VDG+++DLGVSS Q+D  +RGFS+Q +  L
Sbjct: 64  KLQQDLHKVTFVHNNFRNLANILAELNIDKVDGILYDLGVSSPQLDVPERGFSYQHNAKL 123

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     +SA +VVN  + + L +I    GEEK + +IA  I  RRQ  P +TT DL 
Sbjct: 124 DMRMDQTQPLSAYEVVNTWSYETLVKIFFRYGEEKFSKQIARKIEARRQQQPIETTFDLV 183

Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + I++ +   ++    HPA R FQA+RI VN+E+      L  A   +K  G + V++FH
Sbjct: 184 ACIKEGIPAKARRKGGHPAKRVFQAIRIAVNDELAAFEDSLEQAIDHVKVNGRISVITFH 243

Query: 252 SLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDRL K+ F          R + +   A+    + + +K +V    D+  N R+RSAK
Sbjct: 244 SLEDRLCKQMFQEYEKGPDVPRGLPVLPEAYTPKLKRVNRKPIVADATDLEDNHRARSAK 303

Query: 311 LRAG 314
           LR  
Sbjct: 304 LRVA 307


>gi|315147940|gb|EFT91956.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX4244]
          Length = 322

 Score =  167 bits (424), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 107/316 (33%), Positives = 171/316 (54%), Gaps = 19/316 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  V +D T G  G+S           ++ A D+D  A++  + 
Sbjct: 11  HYTVLLKETVDGLQVKPDGVYVDCTLGGAGHSEYLLTQLNEHGHLYAFDQDQKALAHAKT 70

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            ++ Y  K Q +  ++ F  +++ + + GV   DG+++DLGVSS Q+D  +RGFS+ +  
Sbjct: 71  RLQKYVDKGQVTFIKSNFRNIKEELAEHGVFHVDGILYDLGVSSPQLDEAERGFSYHQDA 130

Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM     ++A +VVN  +  +L +I    GEEK + +I   I + R+  P +TT +
Sbjct: 131 PLDMRMDQDAPLTAREVVNTYSYSELVKIFFRYGEEKFSKQITREIERVREKQPIETTGE 190

Query: 191 LSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I+  +   ++    HPA R FQA+RI VN+E+  + + L  A   L   G + V++
Sbjct: 191 LVEIIKTAIPAPARRKGGHPAKRIFQAIRIAVNDELGAVEESLEQAIDLLAKNGRISVIT 250

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPS-NAHPAVFQS----ITKKVVVPTQEDVAFNR 304
           FHSLEDR+VK  F   S     V+ + P     P  FQ     IT+K ++P+  +++ N 
Sbjct: 251 FHSLEDRIVKTMFKEYS----TVQDLPPGIPVVPEEFQPELKVITRKPILPSDSELSENN 306

Query: 305 RSRSAKLRAGMRTVER 320
           RSRSAKLR   +   R
Sbjct: 307 RSRSAKLRIAEKIKSR 322


>gi|298480587|ref|ZP_06998784.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. D22]
 gi|298273408|gb|EFI14972.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. D22]
          Length = 304

 Score =  167 bits (424), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 107/300 (35%), Positives = 163/300 (54%), Gaps = 16/300 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HVPVLL++ +  +N  PG   +D TFG  G+SR        G  ++  D+D       + 
Sbjct: 9   HVPVLLKESVDGMNIQPGGTYVDVTFGGAGHSREILSRLGEGGRLLGFDQDE---DAERN 65

Query: 77  TMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + D    F   ++ F  LQ+   Y   + VD ++ DLGVSS   D  +RGFSF+  G L
Sbjct: 66  IVND--PHFIFVRSNFRYLQNFLRYHDIEQVDAILADLGVSSHHFDDSERGFSFRFDGAL 123

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  +GI+A+D+VN    + L  +  + GE K + ++A  IVK R     +T  +  
Sbjct: 124 DMRMNKRAGITAADIVNTYEEERLANLFYLYGELKNSRKLASVIVKARSGQNIRTIGEFL 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I+    F +        + FQALRI VN E+E L + L++A +ALK GG L+V+++HS
Sbjct: 184 EIIKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLQAATEALKPGGRLVVITYHS 241

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK    + + +  A      +   P  F+ +  KV+VP + ++  N RSRSAKLR
Sbjct: 242 LEDRMVKNIMKTGNVEGKAESDFFGNLQTP--FRLVNNKVIVPDEAEIERNPRSRSAKLR 299


>gi|170016882|ref|YP_001727801.1| S-adenosyl-methyltransferase MraW [Leuconostoc citreum KM20]
 gi|263456317|sp|B1MXV5|RSMH_LEUCK RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|169803739|gb|ACA82357.1| S-adenosyl-methyltransferase MraW [Leuconostoc citreum KM20]
          Length = 313

 Score =  167 bits (424), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 105/306 (34%), Positives = 165/306 (53%), Gaps = 12/306 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76
           +HV VLL + +ALL   P    +DAT G GG++    K      + + D+D  A+   Q 
Sbjct: 5   EHVTVLLHEAVALLAINPTGTYVDATLGGGGHTGEILKQLTTGKLYSFDQDDTAIKYNQT 64

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
              D     +  L    F QL+  + ++    VDG+V+DLGVSS+Q D G RGFS+    
Sbjct: 65  RYADEIAAGKLILIHQNFRQLKVALAEQHVTAVDGIVYDLGVSSVQFDDGQRGFSYNYDA 124

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM     ++A  +VN     D+ R+L   GE++   ++A  I + R   P  TT +
Sbjct: 125 ELDMRMDQRQTLTAKTIVNDWPFNDILRVLSRYGEDRFPKQVARKIEQHRDKGPINTTFE 184

Query: 191 LSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I++ +   ++    HPA R+FQALR+ VN+E+  L   L  A + L   G + V++
Sbjct: 185 LVDIIKEAIPAPARRKGGHPAKRTFQALRVAVNDELGALEDSLTQALELLAPSGRISVIT 244

Query: 250 FHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           F SLEDRLVK+ F  ++    + A   ++P    P  ++ +T+K ++P++ ++  N RS 
Sbjct: 245 FQSLEDRLVKQMFREKTSMPDLPAGLPVLPGQFEPD-YKLLTRKPILPSETEMTDNHRSE 303

Query: 308 SAKLRA 313
           SAKLR 
Sbjct: 304 SAKLRG 309


>gi|126654823|ref|ZP_01726357.1| S-adenosyl-methyltransferase MraW [Cyanothece sp. CCY0110]
 gi|126623558|gb|EAZ94262.1| S-adenosyl-methyltransferase MraW [Cyanothece sp. CCY0110]
          Length = 304

 Score =  167 bits (424), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 115/305 (37%), Positives = 167/305 (54%), Gaps = 29/305 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           H PVL ++VI  L   P    LDAT G GG+SR   +   +V    +D D  A++  Q+ 
Sbjct: 16  HTPVLCQEVIEGLAIEPNGHYLDATLGRGGHSRLILEAFPDVRVTGIDLDGEAIATTQDN 75

Query: 78  MRDYKE-QFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           + +  E +F ++Q  F+   DY  +    +G++ DLGVSS Q D  +RGFSF+    LDM
Sbjct: 76  LSEIAENRFQVWQGNFA---DYPGETAQFNGILADLGVSSPQFDVPERGFSFRHEAVLDM 132

Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM+    ++A++++N  +   L  +    GEE+++  IA  IV++R   PF+TT +L+  
Sbjct: 133 RMNREQSLTAAEIINHWDQTSLADLFYQYGEERRSRPIARRIVQQR---PFETTTELAEA 189

Query: 195 IQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           I K      +  RIHPATR FQALRI VN+E+  L + L  A   LK GG + ++SFHSL
Sbjct: 190 IAKCFPPKQRYGRIHPATRVFQALRIAVNDELGSLERFLEKAPHWLKPGGRIGIISFHSL 249

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           EDR VK  F  R   ++ V               +TKK ++   E+   N RSRSAKLR 
Sbjct: 250 EDRRVKYSF--RDSLLLDV---------------VTKKPMIAQPEEREKNPRSRSAKLRF 292

Query: 314 GMRTV 318
             R +
Sbjct: 293 AQRKL 297


>gi|67925208|ref|ZP_00518575.1| methyltransferase [Crocosphaera watsonii WH 8501]
 gi|67852944|gb|EAM48336.1| methyltransferase [Crocosphaera watsonii WH 8501]
          Length = 292

 Score =  167 bits (424), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 115/305 (37%), Positives = 166/305 (54%), Gaps = 33/305 (10%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           H PVL + ++  L   P    LDAT G GG+SR       +V    +D D  A++  Q  
Sbjct: 8   HTPVLPQALLDGLAIDPNGHYLDATLGRGGHSRLILATFPDVRVTGIDLDDEAIATTQGN 67

Query: 78  MRD-YKEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           + + + ++  ++Q  F+   DY    G  +G++ DLGVSS Q D  +RGFSF+   PLDM
Sbjct: 68  LSELFGDRLQVWQGNFA---DYSGKIGEFNGIIADLGVSSPQFDVAERGFSFRHQAPLDM 124

Query: 136 RMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM+    ++A++++N  +   L  +    GEE+++  IA  IV++R   PF+TT  L+  
Sbjct: 125 RMNRQQSLTAAEIINHWDQTSLADLFYQYGEERRSRVIARRIVQQR---PFETTTALAEA 181

Query: 195 IQKTVYF---SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           I   + F    +  RIHPATR FQALRI VN+E+  L + L  A   LK GG + ++SFH
Sbjct: 182 I--ALCFPPKQRYGRIHPATRVFQALRIAVNDELGSLERFLEKAPHWLKPGGRIGIISFH 239

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR VK  F  R   ++ V               +TKK ++P  E+ A N RSRSAKL
Sbjct: 240 SLEDRRVKYSF--RDSLLLDV---------------VTKKPIIPQAEEQANNPRSRSAKL 282

Query: 312 RAGMR 316
           R   R
Sbjct: 283 RFAQR 287


>gi|328945057|gb|EGG39213.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus sanguinis SK1087]
          Length = 316

 Score =  167 bits (424), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 105/309 (33%), Positives = 175/309 (56%), Gaps = 14/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGS--NVIALDRDPFAVSCGQE 76
           H+ VLL + +  L   P  + +DAT G  G+S     ++G   ++ A D+D  A+   ++
Sbjct: 7   HITVLLHETVDQLAVKPDGIYVDATLGGAGHSEYLLSQLGDEGHLYAFDQDQMAIDNAKK 66

Query: 77  TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y E+   +  +  F  L+  + + GV   DG+ +DLGVSS Q+D  +RGFS+++  
Sbjct: 67  RLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQRERGFSYKQDA 126

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+  + ++A +VVN  + +DL RI    GE+K + +IA  I + R   P +TT +
Sbjct: 127 PLDMRMNREAALTAFEVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQARSVKPIETTTE 186

Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L+ +I K+   +K    + HPA + FQA+RI VN+E+    + ++ A   L   G + V+
Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDLLAVDGRIAVI 245

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F   S   V      IP    P + + +++K ++P++E++  N R+ 
Sbjct: 246 TFHSLEDRLTKQLFKDASTVDVPKGLPFIPDELQPKL-ELVSRKPILPSKEELESNNRAH 304

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 305 SAKLRVARK 313


>gi|325695197|gb|EGD37098.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus sanguinis SK150]
          Length = 316

 Score =  167 bits (424), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 107/309 (34%), Positives = 174/309 (56%), Gaps = 14/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGS--NVIALDRDPFAVSCGQE 76
           H+ VLL + +  L   P  + +DAT G  G+S     ++G   ++ A D+D  A+   ++
Sbjct: 7   HITVLLHETVDQLAVKPDGIYVDATLGGAGHSEYLLSQLGDEGHLYAFDQDQTAIDNAKK 66

Query: 77  TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y E+   +  +  F  L+  + + GV   DG+ +DLGVSS Q+D  +RGFS+++  
Sbjct: 67  RLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQRERGFSYKQDA 126

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+  + ++A DVVN  + +DL RI    GE+K + +IA  I + R     +TT +
Sbjct: 127 PLDMRMNREAALTAFDVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQARSIKLIETTTE 186

Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L+ +I K+   +K    + HPA + FQA+RI VNNE+    + ++ A   L   G + V+
Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNNELGAADESIQQAIDLLAVDGRIAVI 245

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F   S   V      IP    P + + +++K ++P+QE++  N R+ 
Sbjct: 246 TFHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKL-ELVSRKPILPSQEELESNNRAH 304

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 305 SAKLRVARK 313


>gi|82750786|ref|YP_416527.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus RF122]
 gi|123549021|sp|Q2YXE3|RSMH_STAAB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|82656317|emb|CAI80731.1| S-adenosyl-methyltransferase [Staphylococcus aureus RF122]
          Length = 311

 Score =  167 bits (424), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 103/306 (33%), Positives = 165/306 (53%), Gaps = 13/306 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+ V+L + I  LN     V +D T G  G++       ++   +IA+D+D  A+   ++
Sbjct: 4   HISVMLNETIDYLNVKENGVYIDCTLGGAGHALYLLNQLNDDGRLIAIDQDQTAIDNAKK 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++++  + +   + F +L   + D   + VDG+ +DLGVSS Q+D  +RGFS+     L
Sbjct: 64  VLKEHLHKVTFVHSNFRELTQILKDLNIEKVDGIYYDLGVSSPQLDIPERGFSYHHDATL 123

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     ++A ++VN  + + L +I    GEEK + +IA  I   R+  P  TT +L 
Sbjct: 124 DMRMDQTQELTAYEIVNNWSYEALVKIFYRYGEEKFSKQIARRIEAHREQQPITTTLELV 183

Query: 193 SLIQKTVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
            +I++ +  +K  R   HPA R FQALRI VN+E+      +  A + +K  G + V++F
Sbjct: 184 DIIKEGIP-AKARRKGGHPAKRVFQALRIAVNDELSAFEDSIEQAIELVKVDGRISVITF 242

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           HSLEDRL K+ F          R +  IP    P + + I +K +  T+ED+  N R+RS
Sbjct: 243 HSLEDRLCKQVFQEYEKGPEVPRGLPVIPEAYTPKL-KRINRKPITATEEDLDDNNRARS 301

Query: 309 AKLRAG 314
           AKLR  
Sbjct: 302 AKLRVA 307


>gi|256028668|ref|ZP_05442502.1| methyltransferase [Fusobacterium sp. D11]
          Length = 331

 Score =  167 bits (424), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 109/313 (34%), Positives = 176/313 (56%), Gaps = 20/313 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+PVL  + +  L   P  + +D T G G +S    +  S+   +I++D+D  A+   ++
Sbjct: 26  HIPVLYYETLDNLVINPDGIYIDCTLGGGSHSEGILERLSDKGLLISIDQDINAIEYSKK 85

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  +  ++ +F+  F  +       GVD   G++ D+GVSS Q+D  +RGFS++    L
Sbjct: 86  RLEKFGSKWKVFKGNFENIDTIAYMAGVDKVDGILMDIGVSSKQLDDPERGFSYRYDVKL 145

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+    ISA DVVN  + + L++I+   GEE+ A +IA  I++ R+S+P + T DL 
Sbjct: 146 DMRMNTEQKISAYDVVNTYSEEQLSKIIFEYGEERHARKIAKLILEERKSSPIEKTSDLI 205

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +LI++   + +    HPA ++FQA+RI VN E+E L   +  A + LK GG L +++FHS
Sbjct: 206 TLIKRA--YPERASKHPAKKTFQAIRIEVNRELEVLENAISKAAELLKVGGRLAIITFHS 263

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV------FQSITKKVVVPTQEDVAFNRRS 306
           LEDR+VK  F     K +A     P +    V      F+ ITKK ++P   ++  N RS
Sbjct: 264 LEDRIVKNKF-----KDLATACKCPKDIPICVCGGVKKFEIITKKPIIPIDNELKNNNRS 318

Query: 307 RSAKLRAGMRTVE 319
            S+KLR   R ++
Sbjct: 319 HSSKLRILERILD 331


>gi|294784753|ref|ZP_06750041.1| S-adenosyl-methyltransferase MraW [Fusobacterium sp. 3_1_27]
 gi|294486467|gb|EFG33829.1| S-adenosyl-methyltransferase MraW [Fusobacterium sp. 3_1_27]
          Length = 314

 Score =  167 bits (424), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 109/313 (34%), Positives = 176/313 (56%), Gaps = 20/313 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+PVL  + +  L   P  + +D T G G +S    +  S+   +I++D+D  A+   ++
Sbjct: 9   HIPVLYYETLDNLVINPDGIYIDCTLGGGSHSEGILERLSDKGLLISIDQDTNAIEYSKK 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  +  ++ +F+  F  +       GVD   G++ D+GVSS Q+D   RGFS++    L
Sbjct: 69  RLEKFGSKWKVFKGNFENIDTIAYMAGVDKVDGILMDIGVSSKQLDDPKRGFSYRYDVKL 128

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+    ISA DVVN  + + L++I+   GEE+ A +IA  IV+ R+S+P + T DL 
Sbjct: 129 DMRMNTEQKISAYDVVNTYSEEQLSKIIFEYGEERHARKIAKLIVEERKSSPIEKTSDLI 188

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +LI++   + +    HPA ++FQA+RI VN E+E L   +  A + LK GG L +++FHS
Sbjct: 189 ALIKRA--YPERASKHPAKKTFQAIRIEVNRELEVLENAMSKAVELLKVGGRLAIITFHS 246

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV------FQSITKKVVVPTQEDVAFNRRS 306
           LEDR+VK  F     K +A     P +    V      F+ ITKK ++P  +++  N R+
Sbjct: 247 LEDRIVKNKF-----KDLATACKCPKDIPICVCGGVKKFEIITKKPIIPIDDELKNNNRA 301

Query: 307 RSAKLRAGMRTVE 319
            S+KLR   R ++
Sbjct: 302 HSSKLRILERILD 314


>gi|332297592|ref|YP_004439514.1| Ribosomal RNA small subunit methyltransferase H [Treponema
           brennaborense DSM 12168]
 gi|332180695|gb|AEE16383.1| Ribosomal RNA small subunit methyltransferase H [Treponema
           brennaborense DSM 12168]
          Length = 330

 Score =  167 bits (423), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 111/307 (36%), Positives = 171/307 (55%), Gaps = 16/307 (5%)

Query: 20  HVPVLLEKVIALLNPAPGK------VILDATFGAGGYSRSFCKMGSN--VIALDRDPFAV 71
           H PVLL++ +  L+P  G+       ++D+T G GG+S +F    S+  +I LD DP   
Sbjct: 5   HTPVLLQECLDALSPV-GEPFEREPFMIDSTLGEGGHSEAFLTKYSDLRIIGLDADPNIQ 63

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPD--KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
           +  +E +  +  + +     F+      P      D ++FDLG+S    +   RGFSF++
Sbjct: 64  ARAKERLAPFGSRMNFHLGWFNDFYANYPGDMPKPDLILFDLGISLFHYEKSGRGFSFRQ 123

Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMR++  +G SA D+VN  +   L  I  I GEE+ + RIA AI + R  +  +T 
Sbjct: 124 DEPLDMRLNPDAGPSAGDLVNSLSSAQLADIFYIYGEERYSRRIAAAIERERAQSKIETA 183

Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
             L+ ++ ++V  + ++  IHPAT++FQALRI VN E+  L + L +A   LK GG + V
Sbjct: 184 AALADIVYRSVPAAYRHGAIHPATKTFQALRIAVNRELNRLPEALPAAFNVLKCGGKMGV 243

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS--ITKKVVVPTQEDVAFNRR 305
           ++FHSLEDR+VK +F + S KV       P      V  +  +T+K + P+  +VA N  
Sbjct: 244 ITFHSLEDRIVKNYFRNLS-KVCICPPEQPICICGGVPHAELLTRKPLGPSGAEVAVNSP 302

Query: 306 SRSAKLR 312
           SRSAKLR
Sbjct: 303 SRSAKLR 309


>gi|307720766|ref|YP_003891906.1| S-adenosyl-methyltransferase MraW [Sulfurimonas autotrophica DSM
           16294]
 gi|306978859|gb|ADN08894.1| S-adenosyl-methyltransferase MraW [Sulfurimonas autotrophica DSM
           16294]
          Length = 308

 Score =  167 bits (423), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 110/305 (36%), Positives = 178/305 (58%), Gaps = 21/305 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           H+PVL ++VI         +++D T G GG+S    +   N+  IA+D+D  A+    + 
Sbjct: 6   HIPVLYKEVIEAFKDLKEGIVIDCTMGYGGHSSLLLEANQNIKLIAIDQDQTAIDFSSKR 65

Query: 78  MRDYKEQFSLFQATFSQ-----LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           +  Y E+ S+ +  FS      LQ+  P++ + G++ D+GVSS+Q+D  +RGFS++ S  
Sbjct: 66  LEKYGERVSIRKGRFSAVIKEILQEVNPNE-IKGILADIGVSSLQLDQKERGFSYE-SDN 123

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM     ++AS+VVN+ +  +L RIL   GE +   +IA  IV+ R   PF + ++L
Sbjct: 124 LDMRMDKDAQLNASNVVNEYSKTELERILLEYGELRNYKKIADVIVQNR---PFVSAKEL 180

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           S  ++   + S+  +IHPAT   QA+RI VN+E+ EL   L+S E+A      + ++SFH
Sbjct: 181 SEAVRP--HMSRGKKIHPATLLMQAIRIEVNDELGELKSLLQSIEEAKLPEAKVAIISFH 238

Query: 252 SLEDRLVKKFFASRSGKVM----AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           SLEDR+VKK F+  S   +    A R    +N    + + +TKK ++  ++++  N RSR
Sbjct: 239 SLEDRIVKKEFSKWSKSCICPPEAFRCSCGNNHQ--LGKILTKKPIMAQEDELKENVRSR 296

Query: 308 SAKLR 312
           SAK+R
Sbjct: 297 SAKMR 301


>gi|184201136|ref|YP_001855343.1| S-adenosyl-methyltransferase MraW [Kocuria rhizophila DC2201]
 gi|263456204|sp|B2GJQ6|RSMH_KOCRD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|183581366|dbj|BAG29837.1| methyltransferase MraW [Kocuria rhizophila DC2201]
          Length = 327

 Score =  167 bits (423), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 117/311 (37%), Positives = 181/311 (58%), Gaps = 12/311 (3%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCG 74
           HVPVLL++ + LL PA      V+LDAT G GG++ +  +   +  V+ +DRDP A+   
Sbjct: 10  HVPVLLDRCLDLLAPALDTEAPVVLDATLGMGGHTHAMLERFPHLRVVGIDRDPQALELA 69

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
              ++ +  +F+    T+  + D     GV   DGV+FDLGVSS+Q+D  +RGF++    
Sbjct: 70  GRRLQRFGSRFASIHTTYDHIADAAAAAGVERVDGVLFDLGVSSLQLDERERGFAYSFDA 129

Query: 132 PLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM S + +SA  VVN+ +   L  I+   GE++ A RIA AIV  R  AP +TT  
Sbjct: 130 PLDMRMDSRAELSAYTVVNEYSEARLRDIIFRWGEDRFAPRIARAIVAARADAPLRTTAQ 189

Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L   ++  V   +++ + HPA ++FQALRI VN E++ L + + +A + ++ GG +I +S
Sbjct: 190 LVDAVRSAVPAAAQHKKGHPAKQTFQALRIEVNEELDVLERAIPAAVETVRVGGRVIAMS 249

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           +HSLEDR+VK+ FA R  +  A R   +    H  V + +T+      +++   N R+ S
Sbjct: 250 YHSLEDRIVKQEFA-RGARSTAPRGFPVELPEHQPVLKVLTRGAERADEQETLENPRAAS 308

Query: 309 AKLRAGMRTVE 319
           A+LRA  R  E
Sbjct: 309 ARLRAVERLRE 319


>gi|199598136|ref|ZP_03211558.1| SAM-dependent methyltransferase for cell envelope biogenesis
           [Lactobacillus rhamnosus HN001]
 gi|199590897|gb|EDY98981.1| SAM-dependent methyltransferase for cell envelope biogenesis
           [Lactobacillus rhamnosus HN001]
          Length = 313

 Score =  167 bits (423), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 112/303 (36%), Positives = 159/303 (52%), Gaps = 12/303 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H  VLL++  A L        +DAT G GG++R      +N  +IA D+D  A++  +  
Sbjct: 6   HETVLLKEATAALAVKSDGTYVDATLGRGGHTRQILNQLTNGRLIAFDQDEAAIAAVKRQ 65

Query: 78  MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
                 Q +L    F  L   + D   + VDGV++DLGVSS Q D   RGFS++   PLD
Sbjct: 66  FGTLPPQLTLVHRNFRDLSAALADLDIRQVDGVLYDLGVSSPQFDDSKRGFSYRFDAPLD 125

Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM     + A  +VN+    +L RI    GEE  + +IA  I + R  AP  TT  L  
Sbjct: 126 MRMDQRQTLDAKTIVNEWPYAELVRIFSRYGEEHFSKQIARRIEQARAQAPITTTFQLVE 185

Query: 194 LIQKTVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           LI+  +  +K  R   HPA + FQA+RI VN+E+  L   L  A K +  GG + V++F 
Sbjct: 186 LIKAGIP-AKARRTGGHPAKKVFQAIRIAVNDELSALEASLEQALKLINVGGRISVITFQ 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDRLVK  F   S      R +  +P  A P  +Q + +K ++P+  ++A N R+ SA
Sbjct: 245 SLEDRLVKTMFKEVSTVQDVPRGLPVVPEAAQPH-YQLVNRKPILPSAAELAENHRAHSA 303

Query: 310 KLR 312
           KLR
Sbjct: 304 KLR 306


>gi|324992001|gb|EGC23923.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus sanguinis SK405]
 gi|325688754|gb|EGD30763.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus sanguinis SK115]
 gi|327490522|gb|EGF22303.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus sanguinis SK1058]
          Length = 316

 Score =  167 bits (423), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 105/309 (33%), Positives = 175/309 (56%), Gaps = 14/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGS--NVIALDRDPFAVSCGQE 76
           H+ VLL + +  L   P  + +DAT G  G+S     ++G   ++ A D+D  A+   ++
Sbjct: 7   HITVLLHETVDQLAVKPDGIYIDATLGGAGHSEYLLSQLGDEGHLYAFDQDQTAIDNAKK 66

Query: 77  TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y E+   +  +  F  L+  + + GV   DG+ +DLGVSS Q+D  +RGFS+++  
Sbjct: 67  RLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQRERGFSYKQDA 126

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+  + ++A +VVN  + +DL RI    GE+K + +IA  I + R   P +TT +
Sbjct: 127 PLDMRMNREAALTAFEVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQARSVKPIETTTE 186

Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L+ +I K+   +K    + HPA + FQA+RI VN+E+    + ++ A   L   G + V+
Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDLLAVDGRIAVI 245

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F   S   V      IP    P + + +++K ++P++E++  N R+ 
Sbjct: 246 TFHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKL-ELVSRKPILPSKEELESNNRAH 304

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 305 SAKLRVARK 313


>gi|258508273|ref|YP_003171024.1| S-adenosyl-methyltransferase MraW [Lactobacillus rhamnosus GG]
 gi|257148200|emb|CAR87173.1| S-adenosyl-methyltransferase MraW [Lactobacillus rhamnosus GG]
 gi|259649590|dbj|BAI41752.1| methyltransferase [Lactobacillus rhamnosus GG]
          Length = 313

 Score =  167 bits (423), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 112/303 (36%), Positives = 159/303 (52%), Gaps = 12/303 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H  VLL++  A L        +DAT G GG++R      +N  +IA D+D  A++  +  
Sbjct: 6   HETVLLKEATAALAVKSDGTYVDATLGRGGHTRQIINQLTNGRLIAFDQDEAAIAAVKRQ 65

Query: 78  MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
                 Q +L    F  L   + D   + VDGV++DLGVSS Q D   RGFS++   PLD
Sbjct: 66  FGTLPPQLTLVHRNFRDLSAALADLDIRQVDGVLYDLGVSSPQFDDSKRGFSYRFDAPLD 125

Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM     + A  +VN+    +L RI    GEE  + +IA  I + R  AP  TT  L  
Sbjct: 126 MRMDQRQTLDAKTIVNEWPYAELVRIFSRYGEEHFSKQIARRIEQARAQAPITTTFQLVE 185

Query: 194 LIQKTVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           LI+  +  +K  R   HPA + FQA+RI VN+E+  L   L  A K +  GG + V++F 
Sbjct: 186 LIKAGIP-AKARRTGGHPAKKVFQAIRIAVNDELSALEASLEQALKLINVGGRISVITFQ 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDRLVK  F   S      R +  +P  A P  +Q + +K ++P+  ++A N R+ SA
Sbjct: 245 SLEDRLVKTMFKEVSTVQDVPRGLPVVPEAAQPH-YQLVNRKPILPSAAELAENHRAHSA 303

Query: 310 KLR 312
           KLR
Sbjct: 304 KLR 306


>gi|224534257|ref|ZP_03674835.1| S-adenosyl-methyltransferase MraW [Borrelia spielmanii A14S]
 gi|224514359|gb|EEF84675.1| S-adenosyl-methyltransferase MraW [Borrelia spielmanii A14S]
          Length = 295

 Score =  167 bits (423), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 105/302 (34%), Positives = 174/302 (57%), Gaps = 25/302 (8%)

Query: 20  HVPVLLEKVIALLNPAPGK---VILDATFGAGGYSRSFC-KMGS-NVIALDRDPFAVSCG 74
           H PVLL+ +  L+   P K   + +D+T G G ++++   K G  +++ ++RD   +   
Sbjct: 7   HFPVLLDAICKLIEDLPLKSNLIYIDSTLGEGVHAKAILEKYGFLSLVGIERDSQILERA 66

Query: 75  QETMRDYKEQFSLFQATFSQL-QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           ++ +R ++ + + F   F     +Y  +   + ++ DLG+S        +GFSF +  PL
Sbjct: 67  KQFLRIFEGRITYFNDWFDNFFANYPLNVKANFILVDLGISMFHYKGSKKGFSFFEDEPL 126

Query: 134 DMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           DMR+  SCS ISA+++VN  +  DL  ++  L  E  + RI+ AIV+ R+    QTT++L
Sbjct: 127 DMRLCSSCS-ISAAEIVNTFSRYDLESLIYNLSNEHYSRRISKAIVEYRKIKKIQTTKEL 185

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            S+I K   FSK  +I+PAT++FQALRI+VN+E+  L + L    + L   G+L +++FH
Sbjct: 186 QSIISKVYPFSKF-KINPATKTFQALRIYVNDELARLKRSLPLWVENLAKDGILAIITFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           S+EDR+VK FF S S  + A                I+KK ++P+ +++  N+ SRSAKL
Sbjct: 245 SIEDRIVKDFFKSLSCDLYA---------------KISKKPIIPSFDEIKKNKPSRSAKL 289

Query: 312 RA 313
           RA
Sbjct: 290 RA 291


>gi|152992227|ref|YP_001357948.1| S-adenosyl-methyltransferase MraW [Sulfurovum sp. NBC37-1]
 gi|262825720|sp|A6Q7Y2|RSMH_SULNB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|151424088|dbj|BAF71591.1| S-adenosyl-methyltransferase MraW [Sulfurovum sp. NBC37-1]
          Length = 307

 Score =  167 bits (423), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 102/299 (34%), Positives = 170/299 (56%), Gaps = 8/299 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           H+PVLLE+V+   +  P    +D T G  G+S    K   ++  I +DRD  A++  ++ 
Sbjct: 5   HIPVLLEEVLESFSRVPEGYFVDCTLGYAGHSSEILKRYDHLKHIGIDRDDEALAFSKKR 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
           +  ++++ +L++ TF+ +   + +  V  ++ D GVSS+Q+D  +RGF+F  S  LDMRM
Sbjct: 65  LEPFRDRSTLYKGTFATVLPTLKEAPVTALLADFGVSSLQLDKKERGFAFD-SETLDMRM 123

Query: 138 SCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
             +  +SA +VVN    + L  I    GE +   ++A A+V  R  AP ++ + LS + +
Sbjct: 124 DANAPLSAYEVVNTYPKEKLEYIFDTYGEVRSYKKLASAVVDARAKAPIESAKALSEIAK 183

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
             +      +IHPAT  FQA+RI VNNE+ E+   L + E     G ++ +++FHSLEDR
Sbjct: 184 GVI--PPGGKIHPATLMFQAIRIEVNNELGEIEGLLDAIEAKHYEGEVVSLITFHSLEDR 241

Query: 257 LVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           LVK  F   S + +   H I        A+ +++++K V  ++E++  N RSRSAKLR+
Sbjct: 242 LVKNRFRKWSQECICDPHAIRCTCGKKHALGKALSRKPVTASKEELRVNPRSRSAKLRS 300


>gi|327459305|gb|EGF05651.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus sanguinis SK1]
          Length = 316

 Score =  167 bits (423), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 105/309 (33%), Positives = 175/309 (56%), Gaps = 14/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGS--NVIALDRDPFAVSCGQE 76
           H+ VLL + +  L   P  + +DAT G  G+S     ++G   ++ A D+D  A+   ++
Sbjct: 7   HITVLLHETVDQLAVKPDGIYIDATLGGAGHSEYLLSQLGDEGHLYAFDQDQTAIDNAKK 66

Query: 77  TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y E+   +  +  F  L+  + + GV   DG+ +DLGVSS Q+D  +RGFS+++  
Sbjct: 67  RLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQRERGFSYKQDA 126

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+  + ++A +VVN  + +DL RI    GE+K + +IA  I + R   P +TT +
Sbjct: 127 PLDMRMNREAALTAFEVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQARSIKPIETTTE 186

Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L+ +I K+   +K    + HPA + FQA+RI VN+E+    + ++ A   L   G + V+
Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDLLAVDGRIAVI 245

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F   S   V      IP    P + + +++K ++P++E++  N R+ 
Sbjct: 246 TFHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKL-ELVSRKPILPSKEELESNNRAH 304

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 305 SAKLRVARK 313


>gi|29348864|ref|NP_812367.1| S-adenosyl-methyltransferase MraW [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253568789|ref|ZP_04846199.1| S-adenosyl-methyltransferase mraW [Bacteroides sp. 1_1_6]
 gi|298387947|ref|ZP_06997496.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 1_1_14]
 gi|42558980|sp|Q8A251|RSMH_BACTN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|29340770|gb|AAO78561.1| S-adenosyl-methyltransferase mraW [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|251840808|gb|EES68889.1| S-adenosyl-methyltransferase mraW [Bacteroides sp. 1_1_6]
 gi|298259354|gb|EFI02229.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 1_1_14]
          Length = 304

 Score =  167 bits (423), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 107/300 (35%), Positives = 163/300 (54%), Gaps = 16/300 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HVPVLL++ +  +N  P    +D TFG  G+SR        G  ++  D+D       + 
Sbjct: 9   HVPVLLKESVDGMNIHPDGTYVDVTFGGAGHSREILSRLGEGGRLLGFDQDE---DAERN 65

Query: 77  TMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + D    F+  ++ F  LQ+   Y   + VD ++ DLGVSS   D  +RGFSF+  G L
Sbjct: 66  IVND--PHFTFVRSNFRYLQNFLRYHDIEQVDAILADLGVSSHHFDDSERGFSFRFDGAL 123

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  +G++A+D+VN    + L  I  + GE K + ++A AIVK R     +T  +  
Sbjct: 124 DMRMNKRAGLTAADIVNTYEEERLANIFYLYGELKNSRKLASAIVKARNGQSIRTIGEFL 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I+    F +        + FQALRI VN E+E L + L +A +ALK GG L+V+++HS
Sbjct: 184 EIIKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLAAATEALKPGGRLVVITYHS 241

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK    + + +  A      +   P  F+ +  KV+VP + ++  N RSRSAKLR
Sbjct: 242 LEDRMVKNIMKTGNVEGKAETDFFGNLQTP--FRLVNNKVIVPDEAEIERNPRSRSAKLR 299


>gi|313678556|ref|YP_004056296.1| S-adenosyl-methyltransferase MraW [Mycoplasma bovis PG45]
 gi|312950217|gb|ADR24812.1| S-adenosyl-methyltransferase MraW [Mycoplasma bovis PG45]
          Length = 300

 Score =  167 bits (422), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 111/300 (37%), Positives = 160/300 (53%), Gaps = 17/300 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H+P+LL++ I  LN     + +D T G GG+S    K   N  ++  D+D FA+   ++ 
Sbjct: 5   HIPILLKEAINSLNIKSNGIYVDLTVGMGGHSAEILKKLDNGMLVGFDKDLFAIEESRKR 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +      F L  + F  + D +       VDG++ DLG+SS Q+D  +RGFS+ K   LD
Sbjct: 65  LSKIGLNFQLIHSDFVNVTDELAKLNITAVDGILVDLGISSPQVDNAERGFSYNKDARLD 124

Query: 135 MRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM+ + +  A  VVN  +  +L  I     E K A ++A+AI K R   P  TT +LS 
Sbjct: 125 MRMNTNQVLDAHFVVNNYDENNLISIFYNYAEVKLAKQVANAIAKNR---PINTTLELSE 181

Query: 194 LIQKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +I K+ Y +K  ++ +P    FQA+RI VNNE   +   L  A   LK    L V+SFHS
Sbjct: 182 II-KSAYPAKLLSQKNPCKAVFQAIRIEVNNEFSSIESMLSQALNLLKKDSSLAVISFHS 240

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LED LVKKFF    G ++  +H  PS       +    KV  P++ ++  N RSRSAKLR
Sbjct: 241 LEDSLVKKFF----GNLIKSKH--PSKMPIKEDKKYIVKVYNPSKSEIELNNRSRSAKLR 294


>gi|320352815|ref|YP_004194154.1| S-adenosyl-methyltransferase MraW [Desulfobulbus propionicus DSM
           2032]
 gi|320121317|gb|ADW16863.1| S-adenosyl-methyltransferase MraW [Desulfobulbus propionicus DSM
           2032]
          Length = 306

 Score =  167 bits (422), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 99/301 (32%), Positives = 171/301 (56%), Gaps = 25/301 (8%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRD 80
           +L++V+  L P P  + +D T G GG++++  +  +    V+  + D  A    ++ +  
Sbjct: 1   MLDEVLHWLQPRPNALYVDGTLGLGGHAQAILEQTAPSGRVVGFEWDDDAAQAARQRLSG 60

Query: 81  YKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
           Y ++ S+   ++  L   +   GV   +G++ DLGVSS+Q+D  +RGFSF+    LDMRM
Sbjct: 61  YGDRLSIVHGSYGDLVPELAKLGVVEIEGLLVDLGVSSLQLDRAERGFSFRTDSVLDMRM 120

Query: 138 SC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
              S ++A+ ++ QA+ + L  I    GEE+QA RIA  + + R+  P  TT  L++++ 
Sbjct: 121 DRRSPLTAASLIAQASEEQLADIFYHYGEERQARRIARFLAEAREKEPVATTGRLAAIVA 180

Query: 197 KTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           + V    +  ++H AT+ FQALRI VN E+  L + L++A + L  G  + +++FHSLED
Sbjct: 181 EAVPRKYHPAKVHVATKVFQALRIAVNGELNNLTRLLQTAPQVLAEGARVCIITFHSLED 240

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           R+VK+ F +                +PA ++ +T++ V P+ E++  N R+RSAKLR   
Sbjct: 241 RIVKQAFQN----------------NPA-YEVVTRRPVEPSAEEIRRNPRARSAKLRVAR 283

Query: 316 R 316
           R
Sbjct: 284 R 284


>gi|34763068|ref|ZP_00144041.1| S-adenosyl-methyltransferase mraW [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|27887267|gb|EAA24365.1| S-adenosyl-methyltransferase mraW [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
          Length = 331

 Score =  167 bits (422), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 109/313 (34%), Positives = 176/313 (56%), Gaps = 20/313 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+PVL  + +  L   P  + +D T G G +S    +  S+   +I++D+D  A+   ++
Sbjct: 26  HIPVLYYETLDNLVINPDGIYIDCTLGGGSHSEGILERLSDKGLLISIDQDTNAIEYSKK 85

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  +  ++ +F+  F  +       GVD   G++ D+GVSS Q+D   RGFS++    L
Sbjct: 86  RLEKFGSKWKVFKGNFENIDTIAYMAGVDKVDGILMDIGVSSKQLDDPKRGFSYRYDVKL 145

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+    ISA DVVN  + + L++I+   GEE+ A +IA  IV+ R+S+P + T DL 
Sbjct: 146 DMRMNIEQKISAYDVVNTYSEEQLSKIIFEYGEERHARKIAKLIVEERKSSPIEKTSDLI 205

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +LI++   + +    HPA ++FQA+RI VN E+E L   +  A + LK GG L +++FHS
Sbjct: 206 ALIKRA--YPERASKHPAKKTFQAIRIEVNRELEVLENAMSKAVELLKVGGRLAIITFHS 263

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV------FQSITKKVVVPTQEDVAFNRRS 306
           LEDR+VK  F     K +A     P +    V      F+ ITKK ++P  +++  N R+
Sbjct: 264 LEDRIVKNKF-----KDLATACKCPKDIPICVCGGVKKFEIITKKPIIPIDDELKNNNRA 318

Query: 307 RSAKLRAGMRTVE 319
            S+KLR   R ++
Sbjct: 319 HSSKLRILERILD 331


>gi|327472730|gb|EGF18157.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus sanguinis SK408]
          Length = 316

 Score =  167 bits (422), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 105/309 (33%), Positives = 175/309 (56%), Gaps = 14/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGS--NVIALDRDPFAVSCGQE 76
           H+ VLL + +  L   P  + +DAT G  G+S     ++G   ++ A D+D  A+   ++
Sbjct: 7   HITVLLHETVDQLAVKPDGIYIDATLGGAGHSEYLLSQLGDEGHLYAFDQDQTAIDNAKK 66

Query: 77  TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y E+   +  +  F  L+  + + GV   DG+ +DLGVSS Q+D  +RGFS+++  
Sbjct: 67  RLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQRERGFSYKQDA 126

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+  + ++A +VVN  + +DL RI    GE+K + +IA  I + R   P +TT +
Sbjct: 127 PLDMRMNRDAALTAFEVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQARSIKPIETTTE 186

Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L+ +I K+   +K    + HPA + FQA+RI VN+E+    + ++ A   L   G + V+
Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDLLAVDGRIAVI 245

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F   S   V      IP    P + + +++K ++P++E++  N R+ 
Sbjct: 246 TFHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKL-ELVSRKPILPSKEELESNNRAH 304

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 305 SAKLRVARK 313


>gi|149275993|ref|ZP_01882138.1| S-adenosyl-methyltransferase MraW [Pedobacter sp. BAL39]
 gi|149233421|gb|EDM38795.1| S-adenosyl-methyltransferase MraW [Pedobacter sp. BAL39]
          Length = 301

 Score =  167 bits (422), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 118/303 (38%), Positives = 158/303 (52%), Gaps = 14/303 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76
           HVPV+L++ I  LN  P  V +D TFG GG+SR   K +G +  +I+ D+DP A     +
Sbjct: 6   HVPVMLKECIDGLNIKPDGVYVDVTFGGGGHSREILKHLGKDGVLISFDQDPDAQLNKID 65

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
             R Y   + F+  +    +L  Y   K VDG++ DLGVSS Q D  +RGFS +    LD
Sbjct: 66  DPRFYFVDQNFAFLKNNL-RLLGY---KTVDGILADLGVSSHQFDVPERGFSTRFESLLD 121

Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM   G + ASDV+N      L +I GI GE K A  +A+A+V  R   P  +  D   
Sbjct: 122 MRMDKQGALKASDVLNTYTEDQLHKIFGIYGEVKNAKSLANAVVTGRLERPIASLADFKR 181

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
                 +  K        + FQALRI VN EI  L   L      LK GG L+V+S+HSL
Sbjct: 182 --AAAAHIPKGKEHKYMAQVFQALRIEVNAEITVLESFLMQTADVLKEGGRLVVMSYHSL 239

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           EDR VK F A    K    +    +   P  F+ IT+K +V   ++V  N R+RSAKLR 
Sbjct: 240 EDRPVKSFIAKGKFKGEVEKDFFGNELKP--FKVITRKAIVAEPDEVERNSRARSAKLRI 297

Query: 314 GMR 316
           G +
Sbjct: 298 GEK 300


>gi|88909214|sp|Q4FQ05|RSMH_PSYA2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 334

 Score =  167 bits (422), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 108/287 (37%), Positives = 160/287 (55%), Gaps = 15/287 (5%)

Query: 39  VILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95
           + +DATFG GG+SR         + +I  D+DP A+   QE +     +  +   +F+ L
Sbjct: 45  IYVDATFGRGGHSRLLLSQLADNATLIVFDKDPTAIRVAQE-LASTDSRVQVVHDSFATL 103

Query: 96  QDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQA 151
            D +   G   VDG++ DLG+SS QID G RGFSF + G +DMRM  S G S ++ +   
Sbjct: 104 TDSLAAMGITQVDGLMADLGISSPQIDDGSRGFSFMRDGAVDMRMDTSRGQSVAEWLETV 163

Query: 152 NVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPAT 211
           +   L  +L   GEE+ + RIA AI   +Q   +++T +L+ +I K  + +     HPAT
Sbjct: 164 DDDTLANVLYDFGEERHSRRIARAI---KQMDRYKSTLELAEVI-KVAHPNWQRGKHPAT 219

Query: 212 RSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRS-GKVM 270
           +SFQA+RIF+NNE+ ++   L  +   LK GG L V+SFHSLEDR +K+F    S G+  
Sbjct: 220 QSFQAMRIFINNELGDVDNFLEQSIPILKVGGQLAVISFHSLEDRRIKQFLQRHSKGQYP 279

Query: 271 AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
              ++      P  F     K V P++ +++ N RSRSA LR   RT
Sbjct: 280 EDENLPMPPKRPRYFSK--PKRVGPSKAEISNNPRSRSAWLRMATRT 324


>gi|125718671|ref|YP_001035804.1| S-adenosyl-methyltransferase MraW [Streptococcus sanguinis SK36]
 gi|262827313|sp|A3CPZ9|RSMH_STRSV RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|125498588|gb|ABN45254.1| S-adenosyl-methyltransferase mraW, putative [Streptococcus
           sanguinis SK36]
 gi|324994098|gb|EGC26012.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus sanguinis SK678]
          Length = 316

 Score =  167 bits (422), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 105/309 (33%), Positives = 175/309 (56%), Gaps = 14/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGS--NVIALDRDPFAVSCGQE 76
           H+ VLL + +  L   P  + +DAT G  G+S     ++G   ++ A D+D  A+   ++
Sbjct: 7   HITVLLHETVDQLAVKPDGIYVDATLGGAGHSEYLLSQLGDEGHLYAFDQDQTAIDNAKK 66

Query: 77  TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y E+   +  +  F  L+  + + GV   DG+ +DLGVSS Q+D  +RGFS+++  
Sbjct: 67  RLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQRERGFSYKQDA 126

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+  + ++A +VVN  + +DL RI    GE+K + +IA  I + R   P +TT +
Sbjct: 127 PLDMRMNREAALTAFEVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQARSVKPIETTTE 186

Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L+ +I K+   +K    + HPA + FQA+RI VN+E+    + ++ A   L   G + V+
Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDLLAVDGRIAVI 245

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F   S   V      IP    P + + +++K ++P++E++  N R+ 
Sbjct: 246 TFHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKL-ELVSRKPILPSKEELESNNRAH 304

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 305 SAKLRVARK 313


>gi|71066610|ref|YP_265337.1| S-adenosyl-methyltransferase MraW [Psychrobacter arcticus 273-4]
 gi|71039595|gb|AAZ19903.1| probable S-adenosyl-methyltransferase [Psychrobacter arcticus
           273-4]
          Length = 384

 Score =  167 bits (422), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 108/287 (37%), Positives = 160/287 (55%), Gaps = 15/287 (5%)

Query: 39  VILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95
           + +DATFG GG+SR         + +I  D+DP A+   QE +     +  +   +F+ L
Sbjct: 95  IYVDATFGRGGHSRLLLSQLADNATLIVFDKDPTAIRVAQE-LASTDSRVQVVHDSFATL 153

Query: 96  QDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQA 151
            D +   G   VDG++ DLG+SS QID G RGFSF + G +DMRM  S G S ++ +   
Sbjct: 154 TDSLAAMGITQVDGLMADLGISSPQIDDGSRGFSFMRDGAVDMRMDTSRGQSVAEWLETV 213

Query: 152 NVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPAT 211
           +   L  +L   GEE+ + RIA AI   +Q   +++T +L+ +I K  + +     HPAT
Sbjct: 214 DDDTLANVLYDFGEERHSRRIARAI---KQMDRYKSTLELAEVI-KVAHPNWQRGKHPAT 269

Query: 212 RSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRS-GKVM 270
           +SFQA+RIF+NNE+ ++   L  +   LK GG L V+SFHSLEDR +K+F    S G+  
Sbjct: 270 QSFQAMRIFINNELGDVDNFLEQSIPILKVGGQLAVISFHSLEDRRIKQFLQRHSKGQYP 329

Query: 271 AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
              ++      P  F     K V P++ +++ N RSRSA LR   RT
Sbjct: 330 EDENLPMPPKRPRYFSK--PKRVGPSKAEISNNPRSRSAWLRMATRT 374


>gi|258438778|ref|ZP_05689931.1| S-adenosyl-methyltransferase mraW [Staphylococcus aureus A9299]
 gi|257848037|gb|EEV72030.1| S-adenosyl-methyltransferase mraW [Staphylococcus aureus A9299]
          Length = 311

 Score =  167 bits (422), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 101/305 (33%), Positives = 163/305 (53%), Gaps = 11/305 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+ V+L + I  LN     V +D T G  G++       ++   +IA+D+D  A+   +E
Sbjct: 4   HISVMLNETIDYLNVKENGVYIDCTLGGAGHALYLLNQLNDDGRLIAIDQDQTAIDNAKE 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++D+  + +   + F +L   + D   + VDG+ +DLGVSS Q+D  +RGFS+     L
Sbjct: 64  VLKDHLHKVTFVHSNFRELTQILKDLNIEKVDGIYYDLGVSSPQLDIPERGFSYHHDATL 123

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     ++A ++VN  + + L +I    GEEK + +IA  I    +  P  TT +L 
Sbjct: 124 DMRMDQTQELTAYEIVNNWSYEALVKIFYRYGEEKFSKQIARRIEAHCEQQPITTTLELV 183

Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I++ +   ++    HPA R FQALRI VN+E+      +  A + +K  G + V++FH
Sbjct: 184 DIIKEGIPAKARRKGGHPAKRVFQALRIAVNDELSAFEDSIEQAIELVKVDGRISVITFH 243

Query: 252 SLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDRL K+ F          R +  IP    P + + + +K +  T+ED+  N R+RSA
Sbjct: 244 SLEDRLCKQVFQEYEKGPEVPRGLPVIPEAYTPKL-KRVNRKPITATEEDLDDNNRARSA 302

Query: 310 KLRAG 314
           KLR  
Sbjct: 303 KLRVA 307


>gi|260495075|ref|ZP_05815204.1| MraW methylase [Fusobacterium sp. 3_1_33]
 gi|260197518|gb|EEW95036.1| MraW methylase [Fusobacterium sp. 3_1_33]
          Length = 314

 Score =  167 bits (422), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 109/313 (34%), Positives = 174/313 (55%), Gaps = 20/313 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+PVL  + +  L   P  V +D T G G +S    +  S+   +I++D+D  A+   ++
Sbjct: 9   HIPVLYYETLDNLVINPDGVYIDCTLGGGSHSEGILERLSDKGLLISIDQDSTAIEYSKK 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  +  ++ +F+  F  +       GVD   G++ D+GVSS Q+D   RGFS++    L
Sbjct: 69  RLEKFGSKWKVFKGNFENIDTIAYMAGVDKVDGILMDIGVSSKQLDDPKRGFSYRYDVKL 128

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+    ISA D+VN    + L++I+   GEE+ A +IA  IV+ R+S+P   T DL 
Sbjct: 129 DMRMNTDQKISAYDIVNTYTEEQLSKIIFEYGEERHARKIAKLIVEERKSSPIGKTSDLI 188

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +LI++   + +    HPA ++FQA+RI VN E+E L   +  A + LK GG L +++FHS
Sbjct: 189 TLIKRA--YPERASKHPAKKTFQAIRIEVNRELEVLGNAISKAAELLKVGGRLAIITFHS 246

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV------FQSITKKVVVPTQEDVAFNRRS 306
           LEDR+VK  F     K +A     P +    V      F+ ITKK ++P  +++  N R+
Sbjct: 247 LEDRIVKNKF-----KDLATACKCPKDIPICVCGGVKKFEIITKKPIIPIDDELKNNNRA 301

Query: 307 RSAKLRAGMRTVE 319
            S+KLR   R ++
Sbjct: 302 HSSKLRILERILD 314


>gi|218131855|ref|ZP_03460659.1| hypothetical protein BACEGG_03477 [Bacteroides eggerthii DSM 20697]
 gi|217986158|gb|EEC52497.1| hypothetical protein BACEGG_03477 [Bacteroides eggerthii DSM 20697]
          Length = 305

 Score =  167 bits (422), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 107/300 (35%), Positives = 161/300 (53%), Gaps = 16/300 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H+PVLL   +  +N  P    +D TFG GG+SR        G  ++  D+D       Q 
Sbjct: 8   HIPVLLMPSVDGMNIRPDGTYVDMTFGGGGHSREILSRLGEGGRLLGFDQDE---DAEQN 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + D    F+  ++ F  L +++   G   VD ++ DLGVSS   D  +RGFSF+  G L
Sbjct: 65  IVND--PHFTFVRSNFRYLHNFLRYHGIEQVDAILADLGVSSHHFDDSERGFSFRFDGML 122

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  +G +A+D+VN    + L  I  + GE K + ++A  IVK R +    T  D  
Sbjct: 123 DMRMNKRAGCTAADIVNTYEEERLADIFYLYGELKNSRKLASVIVKARATRQISTIGDFL 182

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I+    F +        + FQALRI VN E+E L + L +A +ALK GG L+V+++HS
Sbjct: 183 DIIKPL--FGREREKKELAKVFQALRIEVNREMEALKEMLYAATEALKPGGRLVVITYHS 240

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK    + + +  A +    +   P  F+ +  KV+VP + ++  N RSRSAKLR
Sbjct: 241 LEDRMVKNIMKTGNIEGKAEKDFFGNIQTP--FRLVNNKVIVPDETEIERNPRSRSAKLR 298


>gi|256846119|ref|ZP_05551577.1| MraW methylase [Fusobacterium sp. 3_1_36A2]
 gi|256719678|gb|EEU33233.1| MraW methylase [Fusobacterium sp. 3_1_36A2]
          Length = 314

 Score =  167 bits (422), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 111/314 (35%), Positives = 179/314 (57%), Gaps = 22/314 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+PVL  + +  L   P  + +D T G G +S    +  S+   +I++D+D  A+   ++
Sbjct: 9   HIPVLYYETLDNLVINPDGIYIDCTLGGGSHSEGILERLSDKGLLISIDQDTNAIEYSKK 68

Query: 77  TMRDYKEQFSLFQATFSQLQD--YVP--DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            +  +  ++ +F+  F  +    Y+   DK VDG++ D+GVSS Q+D   RGFS++    
Sbjct: 69  RLEKFGSKWKVFKGNFENIDTIAYMASVDK-VDGILMDIGVSSKQLDDPKRGFSYRYDVK 127

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+    ISA DVVN  + + L++I+   GEE+ A +IA  IV+ R+S+P + T DL
Sbjct: 128 LDMRMNTEQKISAYDVVNTYSEEQLSKIIFEYGEERHARKIAKLIVEERKSSPIEKTSDL 187

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +LI++   + +    HPA ++FQA+RI VN E+E L   +  A + LK GG L +++FH
Sbjct: 188 IALIKRA--YPERASKHPAKKTFQAIRIEVNRELEVLENAMSKAVELLKVGGRLAIITFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV------FQSITKKVVVPTQEDVAFNRR 305
           SLEDR+VK  F     K +A     P +    V      F+ ITKK ++P  +++  N R
Sbjct: 246 SLEDRIVKNKF-----KDLATACKCPKDIPICVCGGVKKFEIITKKPIIPIDDELKNNNR 300

Query: 306 SRSAKLRAGMRTVE 319
           + S+KLR   R ++
Sbjct: 301 AHSSKLRILERILD 314


>gi|229552071|ref|ZP_04440796.1| S-adenosyl-methyltransferase [Lactobacillus rhamnosus LMS2-1]
 gi|229314504|gb|EEN80477.1| S-adenosyl-methyltransferase [Lactobacillus rhamnosus LMS2-1]
          Length = 313

 Score =  167 bits (422), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 112/303 (36%), Positives = 159/303 (52%), Gaps = 12/303 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H  VLL++  A L        +DAT G GG++R      +N  +IA D+D  A++  +  
Sbjct: 6   HETVLLKEATAALAVKSDGTYVDATLGRGGHTRQILNQLTNGRLIAFDQDEAAIAAVKRH 65

Query: 78  MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
                 Q +L    F  L   + D   + VDGV++DLGVSS Q D   RGFS++   PLD
Sbjct: 66  FGTLPPQLTLVHRNFRDLSAALADLDIRQVDGVLYDLGVSSPQFDDSKRGFSYRFDAPLD 125

Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM     + A  +VN+    +L RI    GEE  + +IA  I + R  AP  TT  L  
Sbjct: 126 MRMDQRQTLDAKTIVNEWPYAELVRIFSRYGEEHFSKQIARRIEQARAQAPITTTFQLVE 185

Query: 194 LIQKTVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           LI+  +  +K  R   HPA + FQA+RI VN+E+  L   L  A K +  GG + V++F 
Sbjct: 186 LIKAGIP-AKARRTGGHPAKKVFQAIRIAVNDELSALEASLEQALKLINVGGRISVITFQ 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDRLVK  F   S      R +  +P  A P  +Q + +K ++P+  ++A N R+ SA
Sbjct: 245 SLEDRLVKTMFKEVSTVQDVPRGLPVVPEAAQPH-YQLVNRKPILPSAAELAENHRAHSA 303

Query: 310 KLR 312
           KLR
Sbjct: 304 KLR 306


>gi|317474530|ref|ZP_07933804.1| MraW methylase [Bacteroides eggerthii 1_2_48FAA]
 gi|316909211|gb|EFV30891.1| MraW methylase [Bacteroides eggerthii 1_2_48FAA]
          Length = 305

 Score =  167 bits (422), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 107/300 (35%), Positives = 161/300 (53%), Gaps = 16/300 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H+PVLL   +  +N  P    +D TFG GG+SR        G  ++  D+D       Q 
Sbjct: 8   HIPVLLMPSVDGMNIRPDGTYVDMTFGGGGHSREILSRLGEGGRLLGFDQDE---DAEQN 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + D    F+  ++ F  L +++   G   VD ++ DLGVSS   D  +RGFSF+  G L
Sbjct: 65  IVND--PHFTFVRSNFRYLHNFLRYHGIEQVDAILADLGVSSHHFDDSERGFSFRFDGML 122

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  +G +A+D+VN    + L  I  + GE K + ++A  IVK R +    T  D  
Sbjct: 123 DMRMNKRAGCTAADIVNTYEEERLADIFYLYGELKNSRKLASVIVKARATRQISTIGDFL 182

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I+    F +        + FQALRI VN E+E L + L +A +ALK GG L+V+++HS
Sbjct: 183 DIIKPL--FGREREKKELAKVFQALRIEVNREMEALKEMLYAATEALKPGGRLVVITYHS 240

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK    + + +  A +    +   P  F+ +  KV+VP + ++  N RSRSAKLR
Sbjct: 241 LEDRMVKNIMKTGNIEGKAEKDFFGNVQTP--FRLVNNKVIVPDETEIERNPRSRSAKLR 298


>gi|325697683|gb|EGD39568.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus sanguinis SK160]
          Length = 316

 Score =  167 bits (422), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 105/309 (33%), Positives = 175/309 (56%), Gaps = 14/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGS--NVIALDRDPFAVSCGQE 76
           H+ VLL + +  L   P  + +DAT G  G+S     ++G   ++ A D+D  A+   ++
Sbjct: 7   HITVLLHETVDQLAVKPDGIYVDATLGGAGHSEYLLSQLGDEGHLYAFDQDQTAIDNAKK 66

Query: 77  TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y E+   +  +  F  L+  + + GV   DG+ +DLGVSS Q+D  +RGFS+++  
Sbjct: 67  RLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQRERGFSYKQDA 126

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+  + ++A +VVN  + +DL RI    GE+K + +IA  I + R   P +TT +
Sbjct: 127 PLDMRMNREAALTAFEVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQARSIKPIETTTE 186

Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L+ +I K+   +K    + HPA + FQA+RI VN+E+    + ++ A   L   G + V+
Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDLLAVDGRIAVI 245

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F   S   V      IP    P + + +++K ++P++E++  N R+ 
Sbjct: 246 TFHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKL-ELVSRKPILPSKEELESNNRAH 304

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 305 SAKLRVARK 313


>gi|116515077|ref|YP_802706.1| S-adenosyl-dependent methyl transferase [Buchnera aphidicola str.
           Cc (Cinara cedri)]
 gi|122285527|sp|Q057T6|RSMH_BUCCC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|116256931|gb|ABJ90613.1| S-adenosyl-dependent methyl transferase [Buchnera aphidicola str.
           Cc (Cinara cedri)]
          Length = 307

 Score =  167 bits (422), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 100/267 (37%), Positives = 165/267 (61%), Gaps = 15/267 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H+PVLL++ I  LN     + +D TFG GG+++   K       + ++D+D  +V+ G++
Sbjct: 3   HIPVLLKETINALNIKKNGIYIDGTFGNGGHTKEILKYLGQSGKLYSIDQDIKSVNKGKK 62

Query: 77  TMRDYKEQFSLFQATFSQLQDYV----PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            ++D  ++FS+    FS+   Y+      K +DG++ DLG+SS QI+  DRGFSF K+G 
Sbjct: 63  -IKD--KRFSIIFGKFSKKIPYIYKKNKKKKIDGILLDLGISSNQINQNDRGFSFMKNGL 119

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+  +GI A   + +++ K++ ++L   GEE+ + +I++AI  R +      T DL
Sbjct: 120 LDMRMNNTTGIPAWKWLKKSSQKEIEKVLRKYGEERYSKKISYAIYNRNKKKTITQTLDL 179

Query: 192 SSLIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+K +   K ++  HPATR+FQA+RI +NNEI+EL + L+ + K LK    L+++ F
Sbjct: 180 VQIIKKAI--PKIDKYKHPATRTFQAIRIHINNEIKELKKTLKISIKILKKKRRLVIICF 237

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIP 277
           HSLE+R+VK FF  + GK   +   +P
Sbjct: 238 HSLENRIVKNFF-KKHGKTFFIPRGLP 263


>gi|255527766|ref|ZP_05394619.1| S-adenosyl-methyltransferase MraW [Clostridium carboxidivorans P7]
 gi|296186678|ref|ZP_06855080.1| S-adenosyl-methyltransferase MraW [Clostridium carboxidivorans P7]
 gi|296187067|ref|ZP_06855466.1| S-adenosyl-methyltransferase MraW [Clostridium carboxidivorans P7]
 gi|255508553|gb|EET84940.1| S-adenosyl-methyltransferase MraW [Clostridium carboxidivorans P7]
 gi|296048354|gb|EFG87789.1| S-adenosyl-methyltransferase MraW [Clostridium carboxidivorans P7]
 gi|296048715|gb|EFG88147.1| S-adenosyl-methyltransferase MraW [Clostridium carboxidivorans P7]
          Length = 309

 Score =  167 bits (422), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 109/308 (35%), Positives = 167/308 (54%), Gaps = 15/308 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           HV VLLE+ I  LN     + +D T G GG+S    K  S    +I +D+D  A+    +
Sbjct: 5   HVSVLLEETIDALNVKEDGIYVDCTLGGGGHSYEILKRLSPKGRLIGIDQDTAALKAAGD 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++ +    +     F  + + + +   + VDG++ DLGVSS Q+D  +RGFS+ K  PL
Sbjct: 65  RLKQFN-NVTYVHNNFYNIDEILQELNIEKVDGIMMDLGVSSYQLDEAERGFSYMKDAPL 123

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  S  SA D+VN  + + + +I+   GE+  A RIA  IV+RR+    +TT +L 
Sbjct: 124 DMRMNRDSSTSAYDIVNFYSEEQIFKIIKEYGEDNFAKRIAKFIVQRREKETIKTTLELV 183

Query: 193 SLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
            +I++ +   F K+   HPA R+FQA+RI VN E++ L + +  +   L  GG + +++F
Sbjct: 184 DIIRQAIPARFQKDG--HPAKRTFQAIRIEVNRELQILDKAVEDSVNRLNKGGRIAIITF 241

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           HSLEDR +K  F              M      P V + I+KK + P+ E+   N RS+S
Sbjct: 242 HSLEDRKIKVKFKQLENPCTCPPDFPMCVCGKKPLV-KLISKKPIEPSIEESENNSRSKS 300

Query: 309 AKLRAGMR 316
           AKLR   R
Sbjct: 301 AKLRVAER 308


>gi|327462427|gb|EGF08752.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus sanguinis SK1057]
          Length = 316

 Score =  167 bits (422), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 105/309 (33%), Positives = 175/309 (56%), Gaps = 14/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGS--NVIALDRDPFAVSCGQE 76
           H+ VLL + +  L   P  + +DAT G  G+S     ++G   ++ A D+D  A+   ++
Sbjct: 7   HITVLLHETVDQLAVKPEGIYVDATLGGAGHSEYLLSQLGDEGHLYAFDQDQTAIDNAKK 66

Query: 77  TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y E+   +  +  F  L+  + + GV   DG+ +DLGVSS Q+D  +RGFS+++  
Sbjct: 67  RLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQRERGFSYKQDA 126

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+  + ++A +VVN  + +DL RI    GE+K + +IA  I + R   P +TT +
Sbjct: 127 PLDMRMNRDAALTAFEVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQARSVKPIETTTE 186

Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L+ +I K+   +K    + HPA + FQA+RI VN+E+    + ++ A   L   G + V+
Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDLLAVDGRIAVI 245

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F   S   V      IP    P + + +++K ++P++E++  N R+ 
Sbjct: 246 TFHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKL-ELVSRKPILPSKEELESNNRAH 304

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 305 SAKLRVARK 313


>gi|304383929|ref|ZP_07366386.1| S-adenosyl-methyltransferase MraW [Prevotella marshii DSM 16973]
 gi|304335007|gb|EFM01280.1| S-adenosyl-methyltransferase MraW [Prevotella marshii DSM 16973]
          Length = 305

 Score =  167 bits (422), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 110/301 (36%), Positives = 160/301 (53%), Gaps = 18/301 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAV-SCGQ 75
           HVPVLL + +  L   P  V +D TFG GG+SR        G  + A D+D  A  +C  
Sbjct: 9   HVPVLLTESVDGLKIRPNGVYVDVTFGGGGHSREILARLGKGGQLYAFDQDADAEQNCPD 68

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           +      ++F+  ++ F  L++++   G+   DG++ DLGVSS   D   RGFSF+ + P
Sbjct: 69  D------DRFTFVRSNFRYLKNWIHYYGIEKIDGLLADLGVSSHHFDDETRGFSFRFNAP 122

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+  +  +A+D+VN      L+ +    GE K A R+A AIV+ R   P  TTQDL
Sbjct: 123 LDMRMNKRAKTTAADIVNHYTETQLSDLFYGYGELKNARRMAAAIVRERAENPIVTTQDL 182

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           +  ++  +   K +      R FQALRI VN E+  L + L SA + L  GG L ++++H
Sbjct: 183 TDCMRPLI--RKEHEKKDMARLFQALRIEVNQEMTALKEMLESATELLSDGGRLSIITYH 240

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+VK    + +      +        P   Q I  K  VP+ ++   N RSRSAKL
Sbjct: 241 SLEDRMVKNLMKTGNTDGEQKKDFFGRMETP--LQPIGNKPTVPSDDEQQRNPRSRSAKL 298

Query: 312 R 312
           R
Sbjct: 299 R 299


>gi|148243357|ref|YP_001228514.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. RCC307]
 gi|262825772|sp|A5GWA2|RSMH_SYNR3 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|147851667|emb|CAK29161.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. RCC307]
          Length = 299

 Score =  167 bits (422), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 114/318 (35%), Positives = 171/318 (53%), Gaps = 38/318 (11%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGK-VILDATFGAGGYSRSFCKM--GSNVIALD 65
           MSS+ HH      PVL ++V+  L   P + V+LDAT G GG+S     +  G  +I LD
Sbjct: 1   MSSSFHHQ-----PVLPQQVLEALAELPDEGVLLDATVGGGGHSSLLLDVHPGWQLIGLD 55

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125
           +DP A +   + +  + E+  L  + F+    Y PD+ V  V+ DLGVSS Q+D  +RGF
Sbjct: 56  QDPAARAAAAQQLERFGERVQLVASNFAA---YTPDQPVVAVLADLGVSSHQLDVPERGF 112

Query: 126 SFQKSGPLDMRMSCSGI--SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           SF+  GPLDMRM+  G   +A+ ++++     L  +L   GEE+ + RIA  +   +   
Sbjct: 113 SFRADGPLDMRMNTEGDGETAAALIDRLEENALADLLFHYGEERLSRRIARRL---KTEG 169

Query: 184 PFQTTQDLSSLIQKTV---YFSK--NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           P+   +  ++ +   +   Y  K  + RIH ATRSFQALRI VN+E+  L   L  A   
Sbjct: 170 PWDDGERGTAALAYAIAGCYPPKQRHGRIHAATRSFQALRIAVNDELGVLETLLNDAPNW 229

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L+ GG + V+SFHSLEDRLVK  F +                     + I++K ++ +++
Sbjct: 230 LEPGGRIAVISFHSLEDRLVKNRFKADE-----------------RLRVISRKPLIASEQ 272

Query: 299 DVAFNRRSRSAKLRAGMR 316
           +   N R+RSAKLR   R
Sbjct: 273 EAEANPRARSAKLRVAER 290


>gi|332366385|gb|EGJ44136.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus sanguinis SK355]
          Length = 316

 Score =  166 bits (421), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 105/309 (33%), Positives = 175/309 (56%), Gaps = 14/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGS--NVIALDRDPFAVSCGQE 76
           H+ VLL + +  L   P  + +DAT G  G+S     ++G   ++ A D+D  A+   ++
Sbjct: 7   HITVLLHETVDQLAVKPDGIYVDATLGGAGHSEYLLSQLGDEGHLYAFDQDQTAIDNAKK 66

Query: 77  TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y E+   +  +  F  L+  + + GV   DG+ +DLGVSS Q+D  +RGFS+++  
Sbjct: 67  RLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQRERGFSYKQDA 126

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+  + ++A +VVN  + +DL RI    GE+K + +IA  I + R   P +TT +
Sbjct: 127 PLDMRMNRDAALTAFEVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQARSVKPIETTTE 186

Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L+ +I K+   +K    + HPA + FQA+RI VN+E+    + ++ A   L   G + V+
Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDLLAVDGRIAVI 245

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F   S   V      IP    P + + +++K ++P++E++  N R+ 
Sbjct: 246 TFHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKL-ELVSRKPILPSKEELESNNRAH 304

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 305 SAKLRVARK 313


>gi|124515896|gb|EAY57405.1| S-adenosyl-methyltransferase (MraW) [Leptospirillum rubarum]
          Length = 307

 Score =  166 bits (421), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 109/301 (36%), Positives = 164/301 (54%), Gaps = 23/301 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQ-ETM 78
           H+PV+ ++V+ +LN  PG+  +DAT G GG++R+  + G +VIA+DRDP A+   + E +
Sbjct: 17  HLPVMTKEVLEVLNVHPGQWYVDATLGQGGHARAILEAGGSVIAIDRDPKAIEKARLELL 76

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVD--GVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
             + E+  L     + + +++P   VD  GVV D G S  Q      G SF   GPLDMR
Sbjct: 77  PIFGERLRLTCMNHAGMGEFLPSMRVDISGVVLDSGWSMAQASENGAGLSFDAEGPLDMR 136

Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF-QTTQDLSSL 194
           M  +   +A D++ Q + ++L  I    GEE  A  I+ A+V+ R      +T ++L++ 
Sbjct: 137 MDPTLERTAMDILEQQSAEELAAIFSNFGEEPLALPISRALVQSRSRGRLPRTPKELAAF 196

Query: 195 IQKTVYFSKN---NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           +   VY+ K    +R HPATR F ALRI VN EI+ L +G+      L +G  L V++FH
Sbjct: 197 VS-GVYYRKGYRRSRRHPATRVFMALRIEVNGEIDSLVRGVSGVRSILGSGARLAVLTFH 255

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           S EDR +K  F          R  +       + QS   K V+P + ++  N RSRSAKL
Sbjct: 256 SREDREIKHLF----------REWV-REGWGRLLQS---KPVLPGKAEIEHNPRSRSAKL 301

Query: 312 R 312
           R
Sbjct: 302 R 302


>gi|330902009|gb|EGH33332.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 263

 Score =  166 bits (421), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 101/261 (38%), Positives = 154/261 (59%), Gaps = 13/261 (4%)

Query: 61  VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSM 116
           ++  D+DP A++ GQ  +     +F + Q +F++L     ++G    V G++ DLGVSS 
Sbjct: 1   LLGFDKDPQAIATGQ-ALAAEDGRFVIVQRSFAELGSETQERGLAGKVSGILLDLGVSSP 59

Query: 117 QIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175
           Q+D  +RGFSF   GPLDMRM  + G+SA++ +  A  +++ R+    GEE+ A R+A+A
Sbjct: 60  QLDDPERGFSFMNDGPLDMRMDPTCGVSAAEFIATAPAEEIARVFKEYGEERFAKRMANA 119

Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           +V RR+  PF+ T DL+ ++ K    +     +PATR+FQ LRI VNNE+ +L  GL +A
Sbjct: 120 VVARREVQPFERTADLAEVL-KVANPAWEKGKNPATRAFQGLRIHVNNELGDLEAGLEAA 178

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQ---SITKK 291
             AL+ GG L+V+SFHSLEDR+VK F    + G+   +   +P    P  F+    I  K
Sbjct: 179 LDALEVGGRLVVISFHSLEDRIVKLFMRKLAKGEADNMPRNLPIQYKP--FEPKIKIHGK 236

Query: 292 VVVPTQEDVAFNRRSRSAKLR 312
               +  +   N RSRSA +R
Sbjct: 237 AQFASDVETKANPRSRSAVMR 257


>gi|332364602|gb|EGJ42371.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus sanguinis SK1059]
          Length = 316

 Score =  166 bits (421), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 105/309 (33%), Positives = 175/309 (56%), Gaps = 14/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGS--NVIALDRDPFAVSCGQE 76
           H+ VLL + +  L   P  + +DAT G  G+S     ++G   ++ A D+D  A+   ++
Sbjct: 7   HITVLLHETVDQLAVKPDGIYVDATLGGAGHSEYLLSQLGDEGHLYAFDQDQTAIDNAKK 66

Query: 77  TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y E+   +  +  F  L+  + + GV   DG+ +DLGVSS Q+D  +RGFS+++  
Sbjct: 67  RLAPYIERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQRERGFSYKQDA 126

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+  + ++A +VVN  + +DL RI    GE+K + +IA  I + R   P +TT +
Sbjct: 127 PLDMRMNRDAALTAFEVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQARSVKPIETTTE 186

Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L+ +I K+   +K    + HPA + FQA+RI VN+E+    + ++ A   L   G + V+
Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDLLAVDGRIAVI 245

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F   S   V      IP    P + + +++K ++P++E++  N R+ 
Sbjct: 246 TFHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKL-ELVSRKPILPSKEELESNNRAH 304

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 305 SAKLRVARK 313


>gi|327467238|gb|EGF12742.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus sanguinis SK330]
          Length = 316

 Score =  166 bits (421), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 105/309 (33%), Positives = 175/309 (56%), Gaps = 14/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGS--NVIALDRDPFAVSCGQE 76
           H+ VLL + +  L   P  + +DAT G  G+S     ++G   ++ A D+D  A+   ++
Sbjct: 7   HITVLLHETVDQLAVKPDGIYVDATLGGAGHSEYLLSQLGDEGHLYAFDQDQTAIDNAKK 66

Query: 77  TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y E+   +  +  F  L+  + + GV   DG+ +DLGVSS Q+D  +RGFS+++  
Sbjct: 67  RLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQRERGFSYKQDA 126

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+  + ++A +VVN  + +DL RI    GE+K + +IA  I + R   P +TT +
Sbjct: 127 PLDMRMNREAALTAFEVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQARSVKPIETTTE 186

Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L+ +I K+   +K    + HPA + FQA+RI VN+E+    + ++ A   L   G + V+
Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQRAIDLLAVDGRIAVI 245

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F   S   V      IP    P + + +++K ++P++E++  N R+ 
Sbjct: 246 TFHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKL-ELVSRKPILPSKEELESNNRAH 304

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 305 SAKLRVARK 313


>gi|149920500|ref|ZP_01908968.1| methyltransferase [Plesiocystis pacifica SIR-1]
 gi|149818681|gb|EDM78126.1| methyltransferase [Plesiocystis pacifica SIR-1]
          Length = 331

 Score =  166 bits (421), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 118/317 (37%), Positives = 170/317 (53%), Gaps = 27/317 (8%)

Query: 20  HVPVLLEKVIALLNPA----PGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSC 73
           H  VL E V+  L PA    P   ++D T GAGG++ +       + V+ +DRDP A+  
Sbjct: 5   HESVLAEAVVTALVPAIDSVPEGALVDVTCGAGGHTAALLARCTPNRVVLVDRDPAALEH 64

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQKS 130
            +  +           A F+     +   GV  V   + DLGVSS Q+D  +RGFSF+  
Sbjct: 65  ARRRLHGAACTVDFCHAPFADFAAELDRLGVGTVSALIADLGVSSHQLDTAERGFSFRAD 124

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM  + G +A+  +    V +L R+L   GEE +A+RIA AI+  R     QTT+
Sbjct: 125 APLDMRMDPTRGETAAARLAAMTVDELVRVLRRYGEEAEAARIAPAILAARP----QTTK 180

Query: 190 DLSSLIQKTVYF----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            L+ ++++ +      +   RIHPATR+FQALRI VN E+++L + L      L  GG +
Sbjct: 181 VLAEVVEQAMSARSRRALGKRIHPATRTFQALRILVNGELDQLDRLLEDGPARLAVGGRM 240

Query: 246 IVVSFHSLEDRLVKKFFAS--RSGKVMAVRHMIPSN-------AHPAVFQSITKKVVVPT 296
            V+SFHSLEDR VK+ FA   R+ K+ A   +  +        AH  V   I++K VV  
Sbjct: 241 GVISFHSLEDRPVKQRFAKLCRAPKLPASLPLTTAELEARGFRAHFGVPAEISRKGVVAD 300

Query: 297 QEDVAFNRRSRSAKLRA 313
           + +   N RSRSA+LRA
Sbjct: 301 EAERERNPRSRSARLRA 317


>gi|315026965|gb|EFT38897.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX2137]
          Length = 322

 Score =  166 bits (421), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 107/316 (33%), Positives = 171/316 (54%), Gaps = 19/316 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  V +D T G  G+S           ++ A D+D  A++  + 
Sbjct: 11  HYTVLLKETVDGLQVKPDGVYVDCTLGGAGHSEYLLTQLNEHGHLYAFDQDQKALAHAKT 70

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            ++ Y  K Q +  ++ F  +++ + + GV   DG+++DLGVSS Q+D  +RGFS+ +  
Sbjct: 71  RLQKYVDKGQVTFIKSNFRNIKEELAEHGVFHVDGILYDLGVSSPQLDEAERGFSYHQDA 130

Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM     ++A +V N  +  +L +I    GEEK + +IA  I + R+  P +TT +
Sbjct: 131 PLDMRMDQDAPLTAREVGNTYSYSELVKIFFRYGEEKFSKQIAREIERVREKQPIETTGE 190

Query: 191 LSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I+  +   ++    HPA R FQA+RI VN+E+  + + L  A   L   G + V++
Sbjct: 191 LVEIIKTAIPAPARRKGGHPAKRIFQAIRIAVNDELGAVEESLEQAIDLLAKNGRISVIT 250

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPS-NAHPAVFQS----ITKKVVVPTQEDVAFNR 304
           FHSLEDR+VK  F   S     V+ + P     P  FQ     IT+K ++P+  +++ N 
Sbjct: 251 FHSLEDRIVKTMFKEYS----TVQDLPPGIPVVPEEFQPELKVITRKPILPSDSELSENN 306

Query: 305 RSRSAKLRAGMRTVER 320
           RSRSAKLR   +   R
Sbjct: 307 RSRSAKLRIAEKIKSR 322


>gi|84999750|ref|XP_954596.1| s-adenosyl-methyltransferase [Theileria annulata]
 gi|65305594|emb|CAI73919.1| s-adenosyl-methyltransferase, putative [Theileria annulata]
          Length = 389

 Score =  166 bits (421), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 108/323 (33%), Positives = 174/323 (53%), Gaps = 39/323 (12%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
           +H+PVLL++ +  L   P  + LD T G GG++    +       +I++DRDP +V   +
Sbjct: 72  EHIPVLLKESMEYLITDPKGLYLDVTLGYGGHTEEILRRINPNGRLISIDRDPESVYFNR 131

Query: 76  ETMRDYKE--QFSLFQATFSQLQDYV-----PDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             ++ Y +  + S+    FS + D +     P++G  G++ DLG+S+ Q++   RGFS+ 
Sbjct: 132 NRLKTYIDDSRLSVELGKFSGIIDLLKSLKLPNEGYTGIIADLGLSTHQLENSIRGFSYM 191

Query: 129 KSGPLDMRMSC----------------SGISASDVVNQANVKDLTRILGILGEEKQASRI 172
           K+GPLDMRMS                 S  +A  +VN+++   L +I    G+E +A+ I
Sbjct: 192 KNGPLDMRMSSPLNDPFNPNFKIDVKSSENTAYQLVNKSDESTLRKIFKEFGQEPRAASI 251

Query: 173 AHAIV-KRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQG 231
           A  IV KRR      TT  L S++  ++     +++   +R FQALRI VN+E+ EL+  
Sbjct: 252 AKKIVEKRRILGEIDTTDKLKSVVMDSLPMFHRSKMRTLSRIFQALRIKVNDELNELSSF 311

Query: 232 LRSAEKALKAGGLLIVVSFHSLEDRLVKKFFAS-RSGKVMAVRHMIPSNAHPAVFQSITK 290
           L      LK  G  + +++H+LEDRLVK  F + R+ K   V+           F  +TK
Sbjct: 312 LNMIPHLLKYNGRFVCITYHALEDRLVKNSFINLRNLKTSTVK-----------FNILTK 360

Query: 291 KVVVPTQEDVAFNRRSRSAKLRA 313
           K ++PT+E+V  N +SR+AKLR 
Sbjct: 361 KCILPTREEVESNIKSRTAKLRC 383


>gi|324991745|gb|EGC23677.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus sanguinis SK353]
          Length = 316

 Score =  166 bits (420), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 105/309 (33%), Positives = 174/309 (56%), Gaps = 14/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76
           H+ VLL + +  L   P  + +DAT G  G+S    S  +   ++ A D+D  A+   ++
Sbjct: 7   HITVLLHETVDQLAVKPDGIYVDATLGGAGHSEYLLSQLRDEGHLYAFDQDQTAIDNAKK 66

Query: 77  TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y E+   +  +  F  L+  + + GV   DG+ +DLGVSS Q+D  +RGFS+++  
Sbjct: 67  RLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQRERGFSYKQDA 126

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+  + ++A +VVN  + +DL RI    GE+K + +IA  I + R   P +TT +
Sbjct: 127 PLDMRMNREAALTAFEVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQARSIKPIETTTE 186

Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L+ +I K+   +K    + HPA + FQA+RI VN+E+    + ++ A   L   G + V+
Sbjct: 187 LAEII-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDLLAVDGRIAVI 245

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F   S   V      IP    P + + +++K ++P++E++  N R+ 
Sbjct: 246 TFHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKL-ELVSRKPILPSKEELESNNRAH 304

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 305 SAKLRVARK 313


>gi|313617974|gb|EFR90135.1| S-adenosyl-methyltransferase MraW [Listeria innocua FSL S4-378]
          Length = 274

 Score =  166 bits (420), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 94/260 (36%), Positives = 157/260 (60%), Gaps = 8/260 (3%)

Query: 60  NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSM 116
           ++ A D+D  A+   +  + +Y ++ +  ++ F  +++ + ++G   VDG+++DLGVSS 
Sbjct: 9   HLFAFDQDQTAIDNAKIKLAEYSDRVTFIKSNFRYMKEALNERGIEAVDGILYDLGVSSP 68

Query: 117 QIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175
           Q+D  +RGFS+ +   LDMRM     ++A  VVN+ + +DL RI    GEEK + +IA  
Sbjct: 69  QLDERERGFSYHQDAALDMRMDQEQELTAKKVVNEWSYQDLIRIFFQYGEEKFSKQIARE 128

Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234
           I +RR+  P +TT +L  +I+  +   ++    HP  R+FQA+RI VN+E+  +   L +
Sbjct: 129 IERRREVKPIETTGELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEN 188

Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKV 292
           A   LK GG + V++FHSLEDR+ K  F  A++   +     +IP    P  F+  T+K 
Sbjct: 189 ALTLLKPGGRISVITFHSLEDRITKHLFQEATKGPDLPPGLPVIPDEYKPD-FKLATRKP 247

Query: 293 VVPTQEDVAFNRRSRSAKLR 312
           +VP++E++  N R+RSAKLR
Sbjct: 248 IVPSEEELEQNNRARSAKLR 267


>gi|260886497|ref|ZP_05897760.1| S-adenosyl-methyltransferase MraW [Selenomonas sputigena ATCC
           35185]
 gi|330839659|ref|YP_004414239.1| S-adenosyl-methyltransferase MraW [Selenomonas sputigena ATCC
           35185]
 gi|260863640|gb|EEX78140.1| S-adenosyl-methyltransferase MraW [Selenomonas sputigena ATCC
           35185]
 gi|329747423|gb|AEC00780.1| S-adenosyl-methyltransferase MraW [Selenomonas sputigena ATCC
           35185]
          Length = 311

 Score =  166 bits (420), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 111/307 (36%), Positives = 160/307 (52%), Gaps = 19/307 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  V+ E+ +A L   P    +D T G  G++R           +I LD+D  A+   +E
Sbjct: 5   HTSVMPEETLAALAVKPAGTYIDCTLGGAGHARRIADRLSPAGRLIGLDQDEAAIRAAKE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + +   +  + ++ F  L   +   GV   DGV+FDLGVSS QID  +RGFS+ +  PL
Sbjct: 65  RLANVSCRVDVVRSNFRALDSVLQSLGVTSVDGVLFDLGVSSHQIDTAERGFSYMQDAPL 124

Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  S + SA +VVN+ +  +L  I    GEE+ A RIA  IV  RQ  P +TT +L 
Sbjct: 125 DMRMDTSRLLSAHEVVNEYDEAELWHIFRDYGEERWAKRIAEFIVAARQEKPIETTGELV 184

Query: 193 SLIQKTVY--FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
            ++ + V     +    HPA R FQA+RI VN+E+  L   + +A  AL  GG + V++F
Sbjct: 185 DIVCRAVPKGVRRAAGGHPAKRIFQAIRIEVNDELGILQASVENAVHALAPGGRIAVLTF 244

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK-----KVVVPTQEDVAFNRR 305
           HSLEDR+VK+       K +A   + P      V     K     K   P+  + A N R
Sbjct: 245 HSLEDRIVKQAL-----KELARGCICPPGLPVCVCGHEPKVRLLGKAQKPSAAEAAENPR 299

Query: 306 SRSAKLR 312
           ++SAKLR
Sbjct: 300 AKSAKLR 306


>gi|319900359|ref|YP_004160087.1| S-adenosyl-methyltransferase MraW [Bacteroides helcogenes P 36-108]
 gi|319415390|gb|ADV42501.1| S-adenosyl-methyltransferase MraW [Bacteroides helcogenes P 36-108]
          Length = 306

 Score =  166 bits (420), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 109/308 (35%), Positives = 166/308 (53%), Gaps = 17/308 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPFAVSCGQE 76
           H+PVLL   +  +N  P    +D TFG GG+SR      K G  ++  D+D       + 
Sbjct: 8   HIPVLLMPSVDGMNIRPDGTYVDVTFGGGGHSREILTRLKDGGRLLGFDQDE---DAERN 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + D    F+  ++ F  L +++   G   VD ++ DLGVSS   D   RGFSF+  G L
Sbjct: 65  IVND--PHFTFVRSNFRYLHNFLRYHGIGQVDAILADLGVSSHHFDDSQRGFSFRFDGEL 122

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  +G +A+DVVN  + + L  I  + GE K + ++A  I K R +    T  +  
Sbjct: 123 DMRMNKRAGTTAADVVNNCSEEHLADIFYLYGELKNSRKLASVIAKARAAQKITTIGEFL 182

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I+    F +        + FQALRI VN+E+E L + L +A +ALK GG L+V+++HS
Sbjct: 183 DIIKPL--FGREREKKELAKVFQALRIEVNHEMEALKEMLYAATEALKPGGRLVVITYHS 240

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK    + + +  A +    +   P  F+ +  KV+VP + ++  N RSRSAKLR
Sbjct: 241 LEDRMVKNIMKTGNVEGKAEKDFFGNVQTP--FRLVNNKVIVPDEAEIERNPRSRSAKLR 298

Query: 313 AGMRTVER 320
              + VER
Sbjct: 299 IAEK-VER 305


>gi|195941340|ref|ZP_03086722.1| hypothetical protein Bbur8_00460 [Borrelia burgdorferi 80a]
 gi|224533199|ref|ZP_03673799.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi WI91-23]
 gi|224511926|gb|EEF82327.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi WI91-23]
 gi|312148089|gb|ADQ30748.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi JD1]
          Length = 296

 Score =  166 bits (420), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 100/302 (33%), Positives = 171/302 (56%), Gaps = 24/302 (7%)

Query: 20  HVPVLLEKVIALLNPAPGK---VILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           H PVLL+ +  L+   P K   + +D+T G G ++++  +     +++ ++RDP  +   
Sbjct: 7   HFPVLLDAICKLIEDLPVKSDLIYIDSTLGEGVHAKAILEKYDFLSLVGIERDPQILERA 66

Query: 75  QETMRDYKEQFSLFQATFSQL-QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           ++ +  ++E+ + F   F     +Y  +   + ++ DLG+S        +GFSF +  PL
Sbjct: 67  RQFLSIFEERITYFNDWFDNFFVNYPLNVKANFILVDLGISMFHYKGSKKGFSFLEDEPL 126

Query: 134 DMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           DMR+  S   ISA+++VN  +  DL  ++  L  E  + RI+ AIV+ R+    +TT++L
Sbjct: 127 DMRLCSSSCKISAAEIVNTYSKYDLEALIYDLSNEHYSRRISKAIVEYRKIKKIETTKEL 186

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            S+I K   FSK  +I+PAT++FQALRI+VN+E+  L + L    + L   G+L +++FH
Sbjct: 187 QSIISKVYPFSKV-KINPATKTFQALRIYVNDELTRLKRSLPFWVENLAKDGILAIITFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           S+EDR+VK FF S S  + A                I+KK ++P+ +++  N+ SRSAKL
Sbjct: 246 SIEDRIVKDFFRSLSCDLYA---------------KISKKPIMPSFDEIKKNKPSRSAKL 290

Query: 312 RA 313
           R 
Sbjct: 291 RV 292


>gi|154250452|ref|YP_001411277.1| S-adenosyl-methyltransferase MraW [Fervidobacterium nodosum
           Rt17-B1]
 gi|263447049|sp|A7HNY7|RSMH_FERNB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|154154388|gb|ABS61620.1| S-adenosyl-methyltransferase MraW [Fervidobacterium nodosum
           Rt17-B1]
          Length = 294

 Score =  166 bits (420), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 110/308 (35%), Positives = 165/308 (53%), Gaps = 32/308 (10%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK----MGSNVIALDRDPFAVSCGQ 75
           H+PVLL +V+  L   P  V +D T G GG++R+  +     G  VI +D D   +   +
Sbjct: 9   HIPVLLNEVVENLIWKPDGVYVDCTVGEGGHTRAIAERVLPYGGRVIGIDVDSEVLQIAE 68

Query: 76  ETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +  Y     LF+ ++ +L      +    VDG++ DLGVS+ Q+    RGFSF +  P
Sbjct: 69  HNLLSYP-NVQLFKFSYVELPVLLSLLQVHKVDGLLVDLGVSTYQLKAEGRGFSFNQDEP 127

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+  + ++A  +VN    + L  I+   GEE  + RIA AIV+ R   P QTT+ L
Sbjct: 128 LDMRMNLENNLTAYHIVNTYPEEKLADIIYNYGEENFSRRIARAIVQNR---PIQTTRQL 184

Query: 192 SSLIQKTVYFSK--NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
             +I++ + + +  N + H AT++FQA+RI VN EIE +++ L  A   L +GG L ++S
Sbjct: 185 VEVIKRALPYKEVHNRKRHFATKTFQAIRIEVNKEIENISKFLEFAPDYLNSGGRLAIIS 244

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDR+VK  F +        + + P               + PT  +VA N R+RSA
Sbjct: 245 FHSLEDRIVKHVFKND-------KRLKP-----------IGDFISPTTFEVAENPRARSA 286

Query: 310 KLRAGMRT 317
           KLR   R 
Sbjct: 287 KLRLAERV 294


>gi|227543126|ref|ZP_03973175.1| S-adenosyl-methyltransferase MraW [Corynebacterium glucuronolyticum
           ATCC 51866]
 gi|227181114|gb|EEI62086.1| S-adenosyl-methyltransferase MraW [Corynebacterium glucuronolyticum
           ATCC 51866]
          Length = 354

 Score =  166 bits (420), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 107/321 (33%), Positives = 171/321 (53%), Gaps = 24/321 (7%)

Query: 20  HVPVLLEKVIALL------NPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAV 71
           HVPVL ++++ LL      + A G + +D T GAGG++        N  VI +DRD  A+
Sbjct: 31  HVPVLRDRMVELLRRGIAVDGATG-IAVDGTLGAGGHTEHLLATDPNARVIGVDRDAQAL 89

Query: 72  SCGQETMRDYKEQFSLFQATFSQL------------QDYVPDKGVDGVVFDLGVSSMQID 119
                 +  + ++F      F +             Q+   D G+ G +FDLGVSSMQ+D
Sbjct: 90  KDATARLAPFGDRFVGLNVRFDEWMEAASCSSHPLCQEAAAD-GISGALFDLGVSSMQLD 148

Query: 120 CGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178
             +RGF+++   PLDMRM  S GI+A+DV+N  +  DL R+L   GEEK A +IA A+++
Sbjct: 149 QEERGFAYKIDAPLDMRMDPSRGITAADVLNTYSHGDLARVLKTYGEEKFAGKIASAVIR 208

Query: 179 RRQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
            R+  PF  +  L  L+  T+   ++ +  HPA R+FQALR+ VN E+  L Q +     
Sbjct: 209 EREKEPFTRSGRLVELLYDTIPAPARRHGGHPAKRTFQALRVEVNQELRALEQVIPVTAD 268

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297
           AL  GG+++ +S+ SLED++VKK  A  +         +        F  +T+     ++
Sbjct: 269 ALHVGGVMVFMSYQSLEDKIVKKALARLTTSTNPPGLPVDLPGTEPHFALVTRGSEKASK 328

Query: 298 EDVAFNRRSRSAKLRAGMRTV 318
           +++  N R+ S ++RA  R +
Sbjct: 329 KEIDQNPRAASVRVRAAQRVL 349


>gi|239636344|ref|ZP_04677346.1| S-adenosyl-methyltransferase MraW [Staphylococcus warneri L37603]
 gi|239597699|gb|EEQ80194.1| S-adenosyl-methyltransferase MraW [Staphylococcus warneri L37603]
          Length = 311

 Score =  166 bits (420), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 103/304 (33%), Positives = 165/304 (54%), Gaps = 13/304 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+ V+L + I  LN     V +D T G  G++       S+   +IA+D+D  A+   ++
Sbjct: 4   HISVMLNETIDYLNIKEDGVYVDCTLGGAGHALYLLNQLSDEGRLIAIDQDLTAIENAKD 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++++  + +   + F +L   + +   + VDG+ +DLGVSS Q+D  +RGFS+     L
Sbjct: 64  VLKEHLHKVTFIHSNFRELTQILNELNIEKVDGIYYDLGVSSPQLDVPERGFSYHHDAKL 123

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     +SA +VVN+   + L +I    GEEK + +IA  I   R+  P +TT +L 
Sbjct: 124 DMRMDQTQSLSAYEVVNEWPYEALVKIFYRYGEEKFSKQIARRIEANREKQPIETTLELV 183

Query: 193 SLIQKTVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
            +I++ +  +K  R   HPA R FQA+RI VN+E+      +  A + +K  G + V++F
Sbjct: 184 EVIKEGIP-AKARRKGGHPAKRVFQAIRIAVNDELSAFEDSIEQAIELVKVNGRISVITF 242

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           HSLEDRL K+ F          R +  IP    P + + + +K +  T ED+  N R+RS
Sbjct: 243 HSLEDRLCKQMFQEYEKGPDVPRGLPVIPEAYTPKL-KRVNRKPITATDEDLDDNNRARS 301

Query: 309 AKLR 312
           AKLR
Sbjct: 302 AKLR 305


>gi|154500741|ref|ZP_02038779.1| hypothetical protein BACCAP_04419 [Bacteroides capillosus ATCC
           29799]
 gi|150270630|gb|EDM97939.1| hypothetical protein BACCAP_04419 [Bacteroides capillosus ATCC
           29799]
          Length = 313

 Score =  166 bits (420), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 115/301 (38%), Positives = 167/301 (55%), Gaps = 8/301 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77
           H PVLL++ I  LN  P    +DAT G  G+SR   +      +I +DRD  A+      
Sbjct: 8   HKPVLLQECIDGLNIDPTGTYVDATLGRAGHSREIARRLTTGRLICIDRDQAALDAAPGR 67

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +    ++ +L    F  L D +    +D   GV+ DLGVSS Q+D   RGFS+    PLD
Sbjct: 68  LEGLMDRVTLVHGNFGDLADILDRLKLDKLSGVLADLGVSSPQLDDASRGFSYMADAPLD 127

Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM  S  ++A  VVN+   +++ RIL   GEE+ A  IA AIV+ R+ AP +TT +L  
Sbjct: 128 MRMDQSEALTARTVVNEWPQEEIRRILFQFGEERYAPAIAAAIVRAREKAPIETTLELVD 187

Query: 194 LIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +I+  +   +   + HPA RSFQA+RI VN+E+    + +++A  AL  GG L ++SFHS
Sbjct: 188 IIRSAMPAHALCEKQHPAKRSFQAIRIAVNDELSAADKLIQAAVPALAPGGRLAIISFHS 247

Query: 253 LEDRLVKKFFAS-RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK  FA+   G        +       V + + KK +V  +E++  N R+RSAKL
Sbjct: 248 LEDRIVKNAFAAFAKGCTCPPDFPVCVCGKKPVIRLVNKKPIVSGEEELNENARARSAKL 307

Query: 312 R 312
           R
Sbjct: 308 R 308


>gi|216264839|ref|ZP_03436831.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi 156a]
 gi|218249331|ref|YP_002374829.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi ZS7]
 gi|221217744|ref|ZP_03589212.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi 72a]
 gi|224533715|ref|ZP_03674303.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi CA-11.2a]
 gi|225550125|ref|ZP_03771085.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi 118a]
 gi|226321624|ref|ZP_03797150.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi Bol26]
 gi|226709919|sp|B7J1N4|RSMH_BORBZ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|215981312|gb|EEC22119.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi 156a]
 gi|218164519|gb|ACK74580.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi ZS7]
 gi|221192421|gb|EEE18640.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi 72a]
 gi|224513008|gb|EEF83371.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi CA-11.2a]
 gi|225369237|gb|EEG98690.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi 118a]
 gi|226232813|gb|EEH31566.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi Bol26]
          Length = 296

 Score =  166 bits (420), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 100/302 (33%), Positives = 171/302 (56%), Gaps = 24/302 (7%)

Query: 20  HVPVLLEKVIALLNPAPGK---VILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           H PVLL+ +  L+   P K   + +D+T G G ++++  +     +++ ++RDP  +   
Sbjct: 7   HFPVLLDAICKLIEDLPVKSDLIYIDSTLGEGVHAKAILEKYDFLSLVGIERDPQILERA 66

Query: 75  QETMRDYKEQFSLFQATFSQL-QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           ++ +  ++E+ + F   F     +Y  +   + ++ DLG+S        +GFSF +  PL
Sbjct: 67  RQFLSIFEERITYFNDWFDNFFVNYPLNVKANFILVDLGISMFHYKGSKKGFSFLEDEPL 126

Query: 134 DMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           DMR+  S   ISA+++VN  +  DL  ++  L  E  + RI+ AIV+ R+    +TT++L
Sbjct: 127 DMRLCSSSCKISAAEIVNTYSKYDLEALIYDLSNEHYSRRISKAIVEYRKIKKIETTKEL 186

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            S+I K   FSK  +I+PAT++FQALRI+VN+E+  L + L    + L   G+L +++FH
Sbjct: 187 QSIISKVYPFSKV-KINPATKTFQALRIYVNDELARLKRSLPFWVENLAKDGILAIITFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           S+EDR+VK FF S S  + A                I+KK ++P+ +++  N+ SRSAKL
Sbjct: 246 SIEDRIVKDFFRSLSCDLYA---------------KISKKPIMPSFDEIKKNKPSRSAKL 290

Query: 312 RA 313
           R 
Sbjct: 291 RV 292


>gi|224082310|ref|XP_002306643.1| predicted protein [Populus trichocarpa]
 gi|222856092|gb|EEE93639.1| predicted protein [Populus trichocarpa]
          Length = 435

 Score =  166 bits (420), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 117/347 (33%), Positives = 169/347 (48%), Gaps = 53/347 (15%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAV 71
           H    HVPV+L +V+ + +  P +  +D T GA G+S +  K    +   I +D DP A 
Sbjct: 87  HETESHVPVMLGEVVDVFSSLPLRSFIDCTLGAAGHSSAIIKGHPELECYIGMDVDPVAH 146

Query: 72  SCG--------QETMRDYK-----EQFSLFQATFSQLQD--YVPDKGVDGVVFDLGVSSM 116
           +          Q T    K     + F   ++   ++ D   +   GVDG++ DLG+SSM
Sbjct: 147 AKARAHIDALLQSTRSSLKPHLLFKNFKYIKSVVGEIDDDCKLLSSGVDGILMDLGMSSM 206

Query: 117 QIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175
           Q++   RGFS   +GPLDMRM   + + A D++N     ++ RIL   GEE     +   
Sbjct: 207 QVNNPQRGFSVLANGPLDMRMDPRASVKAKDILNYWPDDEVGRILREYGEESNWRWLQKK 266

Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYFSKNNR---IHPATRSFQALRIFVNNEIEELAQGL 232
           IV+ RQ     +T +L  LIQ   + +K  R   I  ATR FQALRI VN+E+  L + L
Sbjct: 267 IVQARQQGGLHSTSELRDLIQGATHGTKGGRQGWIKTATRVFQALRIAVNDELNTLEKSL 326

Query: 233 RSAEKALKAGGLLIVVSFHSLEDRLVKKFF----ASRSG--------------------- 267
            +  + L  GG L V+SFHSLEDR+VK+ F     S  G                     
Sbjct: 327 HACFECLVPGGRLAVISFHSLEDRIVKQTFLKIIESNGGDGDVVEEEAGKRDLRKMRNDI 386

Query: 268 --KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
             K   +R M+           +TK+ + P++E+   NRRSRSAKLR
Sbjct: 387 DAKETWIRQMVQGQNGTI----LTKRPITPSEEEERLNRRSRSAKLR 429


>gi|319957176|ref|YP_004168439.1| s-adenosyl-methyltransferase mraw [Nitratifractor salsuginis DSM
           16511]
 gi|319419580|gb|ADV46690.1| S-adenosyl-methyltransferase MraW [Nitratifractor salsuginis DSM
           16511]
          Length = 319

 Score =  166 bits (420), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 111/302 (36%), Positives = 174/302 (57%), Gaps = 13/302 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           H+PVLL +V+   +     V++D T G  G+S +  +    +  I +DRDP A+    + 
Sbjct: 14  HIPVLLPEVMESFSSLDEGVLIDCTLGYAGHSSALLEAHPKLKLIGIDRDPEALEFSAQR 73

Query: 78  MRDYKEQFSLFQATFSQ-LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
           +  Y+++  L   +FS+ L   +  + V G++ D GVSS+Q+D  +RGFSF     LDMR
Sbjct: 74  LAPYRDRVRLEHGSFSERLPSLIDQEPVVGILADFGVSSLQLDKKERGFSFASEN-LDMR 132

Query: 137 MSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M+    + A DVVN   ++ L  +    GE + A  +A AIVK R +AP  + Q+L+ L 
Sbjct: 133 MNPEAPLRAYDVVNGYPLERLEYLFREYGEIRPAGALAAAIVKARANAPISSAQELAEL- 191

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
            KTV   K  + HPAT+ FQA+RI VN+E+ E+ + L + E    AG ++ +++FHSLED
Sbjct: 192 AKTVLRGKG-KTHPATQMFQAIRIEVNDELGEIERLLDTLEAKRPAGAIVSLITFHSLED 250

Query: 256 RLVKKFFASRSGKVM----AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           RLVK  F + S K +    A+R     N   A+ + +++K    ++E++  N RSRSAKL
Sbjct: 251 RLVKNRFRAWSQKCICPPEAIRCTCGGNH--ALGEMLSRKPRSASKEELRSNPRSRSAKL 308

Query: 312 RA 313
           R+
Sbjct: 309 RS 310


>gi|237720371|ref|ZP_04550852.1| S-adenosyl-methyltransferase mraW [Bacteroides sp. 2_2_4]
 gi|229450122|gb|EEO55913.1| S-adenosyl-methyltransferase mraW [Bacteroides sp. 2_2_4]
          Length = 304

 Score =  166 bits (420), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 107/300 (35%), Positives = 163/300 (54%), Gaps = 16/300 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HVPVLL++ +  +N  P    +D TFG  G+SR        G  ++  D+D       + 
Sbjct: 9   HVPVLLKESVDGMNIQPDGTYVDVTFGGAGHSREILSRLGEGGRLLGFDQDE---DAERN 65

Query: 77  TMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + D    F   ++ F  LQ+   Y   + VD ++ DLGVSS   D  +RGFSF+  G L
Sbjct: 66  IVND--PHFIFVRSNFRYLQNFLRYHDIEQVDAILADLGVSSHHFDDSERGFSFRFDGAL 123

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  +GI+A+D+VN    + L  +L + GE K + ++A  IVK R     +T  +  
Sbjct: 124 DMRMNKRAGITAADIVNTYEEERLANLLYLYGELKNSRKLASVIVKARSGQNIRTIGEFL 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I+    F +        + FQALRI VN E+E L + L++A +ALK GG L+V+++HS
Sbjct: 184 EIIKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLQAATEALKPGGRLVVITYHS 241

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK    + + +  A      +   P  F+ +  KV+VP + ++  N RSRSAKLR
Sbjct: 242 LEDRMVKNIMKTGNVEGKAESDFFGNLQTP--FRLVNNKVIVPDEAEIERNPRSRSAKLR 299


>gi|15594651|ref|NP_212440.1| hypothetical protein BB0306 [Borrelia burgdorferi B31]
 gi|8134806|sp|O51286|RSMH_BORBU RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|2688161|gb|AAC66643.1| conserved hypothetical protein [Borrelia burgdorferi B31]
 gi|312149012|gb|ADQ29083.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi N40]
          Length = 296

 Score =  166 bits (420), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 100/302 (33%), Positives = 171/302 (56%), Gaps = 24/302 (7%)

Query: 20  HVPVLLEKVIALLNPAPGK---VILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           H PVLL+ +  L+   P K   + +D+T G G ++++  +     +++ ++RDP  +   
Sbjct: 7   HFPVLLDAICKLIEDLPVKSDLIYIDSTLGEGVHAKAILEKYDFLSLVGIERDPQILERA 66

Query: 75  QETMRDYKEQFSLFQATFSQL-QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           ++ +  ++E+ + F   F     +Y  +   + ++ DLG+S        +GFSF +  PL
Sbjct: 67  RQFLSIFEERITYFNDWFDNFFVNYPLNVKANFILVDLGISMFHYKGSKKGFSFLEDEPL 126

Query: 134 DMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           DMR+  S   ISA+++VN  +  DL  ++  L  E  + RI+ AIV+ R+    +TT++L
Sbjct: 127 DMRLCSSSCKISAAEIVNTYSKYDLEALIYDLSNEHYSRRISKAIVEYRKIKKIETTKEL 186

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            S+I K   FSK  +I+PAT++FQALRI+VN+E+  L + L    + L   G+L +++FH
Sbjct: 187 QSIISKVYPFSKV-KINPATKTFQALRIYVNDELARLKRSLPFWVENLAKDGILAIITFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           S+EDR+VK FF S S  + A                I+KK ++P+ +++  N+ SRSAKL
Sbjct: 246 SIEDRIVKDFFRSLSCDLYA---------------KISKKPIMPSFDEIKKNKPSRSAKL 290

Query: 312 RA 313
           R 
Sbjct: 291 RV 292


>gi|254518688|ref|ZP_05130744.1| S-adenosyl-methyltransferase MraW [Clostridium sp. 7_2_43FAA]
 gi|226912437|gb|EEH97638.1| S-adenosyl-methyltransferase MraW [Clostridium sp. 7_2_43FAA]
          Length = 310

 Score =  166 bits (419), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 111/302 (36%), Positives = 171/302 (56%), Gaps = 10/302 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           HV VLL + I  LN     + +D T G GG+S    K  S    +I +D+D  A+    E
Sbjct: 5   HVSVLLNECIEGLNIKEDGIYVDGTLGGGGHSLEILKRLSKDGTLIGVDQDKDALKAAGE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++D+        + F  +   + +   K +DG++ DLGVSS Q+D GDRGFS+ +  PL
Sbjct: 65  RLQDFA-NVKFVHSNFYNIDSVLNNLEIKKIDGMLMDLGVSSYQLDEGDRGFSYMQDAPL 123

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  S +SA +V+N+   +++ RI+   GEEK A RIA  IV+ R++ P +TT +L 
Sbjct: 124 DMRMNRESSLSAYEVINEYEEEEIYRIIRDYGEEKFAKRIARFIVENRENKPIETTLELV 183

Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  +   ++    HPA R+FQA+RI VN+E+  L + +      L  GG + +++FH
Sbjct: 184 EIIKAAIPAKARREGPHPAKRTFQAIRIEVNSELSILNKAIEDGVNRLNKGGRMAIITFH 243

Query: 252 SLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK  F   +      +   I      A  + I++K + P++E+V  N RSRSAK
Sbjct: 244 SLEDRIVKLKFKELATSCTCPKEFPICVCGGKAKVKLISRKAIEPSKEEVEENPRSRSAK 303

Query: 311 LR 312
           LR
Sbjct: 304 LR 305


>gi|226320608|ref|ZP_03796168.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi 29805]
 gi|226234027|gb|EEH32748.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi 29805]
          Length = 296

 Score =  166 bits (419), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 100/302 (33%), Positives = 171/302 (56%), Gaps = 24/302 (7%)

Query: 20  HVPVLLEKVIALLNPAPGK---VILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           H PVLL+ +  L+   P K   + +D+T G G ++++  +     +++ ++RDP  +   
Sbjct: 7   HFPVLLDAICKLIEDLPVKSDLIYIDSTLGEGVHAKAILEKYDFLSLVGIERDPQILERA 66

Query: 75  QETMRDYKEQFSLFQATFSQL-QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           ++ +  ++E+ + F   F     +Y  +   + ++ DLG+S        +GFSF +  PL
Sbjct: 67  RQFLSIFEERITYFNDWFDNFFVNYPLNVKANFILVDLGISMFHYKGSKKGFSFLEDEPL 126

Query: 134 DMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           DMR+  S   ISA+++VN  +  DL  ++  L  E  + RI+ AIV+ R+    +TT++L
Sbjct: 127 DMRLCSSSCKISAAEIVNTYSKYDLEALIYDLSNEYYSRRISKAIVEYRKIKKIETTKEL 186

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            S+I K   FSK  +I+PAT++FQALRI+VN+E+  L + L    + L   G+L +++FH
Sbjct: 187 QSIISKVYPFSKV-KINPATKTFQALRIYVNDELARLKRSLPFWVENLAKDGILAIITFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           S+EDR+VK FF S S  + A                I+KK ++P+ +++  N+ SRSAKL
Sbjct: 246 SIEDRIVKDFFRSLSCDLYA---------------KISKKPIMPSFDEIKKNKPSRSAKL 290

Query: 312 RA 313
           R 
Sbjct: 291 RV 292


>gi|167764163|ref|ZP_02436290.1| hypothetical protein BACSTE_02547 [Bacteroides stercoris ATCC
           43183]
 gi|167698279|gb|EDS14858.1| hypothetical protein BACSTE_02547 [Bacteroides stercoris ATCC
           43183]
          Length = 303

 Score =  166 bits (419), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 106/300 (35%), Positives = 162/300 (54%), Gaps = 16/300 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H+PVLL   +  +N  P    +D TFG GG+SR        G  ++  D+D       + 
Sbjct: 8   HIPVLLMPSVDGMNIRPDGTYVDVTFGGGGHSREILSRLGDGGRLLGFDQDE---DAERN 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + D    F+  ++ F  L +++   G   VD V+ DLGVSS   D  +RGFSF+  G L
Sbjct: 65  IVND--PHFTFVRSNFRYLHNFLRYHGIEQVDAVLADLGVSSHHFDDSERGFSFRFDGAL 122

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  +G++A+D+VN  + + L  I  + GE K + ++A  IVK R      T  +  
Sbjct: 123 DMRMNKRAGLTAADIVNTYDEERLADIFYLYGELKNSRKLASVIVKARAVQKIGTIGEFL 182

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I+    F +        + FQALRI VN E+E L + L +A +ALK GG L+V+++HS
Sbjct: 183 EIIKPL--FGREREKKELAKVFQALRIEVNREMEALKEMLYAATEALKPGGRLVVITYHS 240

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK    + + +  A +    +   P  F+ +  KV+VP  +++  N RSRSAKLR
Sbjct: 241 LEDRMVKNIMKTGNIEGKAEKDFFGNVQTP--FRLVNNKVIVPDNDEIERNPRSRSAKLR 298


>gi|283783556|ref|YP_003374310.1| S-adenosyl-methyltransferase MraW [Gardnerella vaginalis 409-05]
 gi|298252636|ref|ZP_06976430.1| S-adenosylmethionine-dependent methyltransferase [Gardnerella
           vaginalis 5-1]
 gi|283442079|gb|ADB14545.1| S-adenosyl-methyltransferase MraW [Gardnerella vaginalis 409-05]
 gi|297533000|gb|EFH71884.1| S-adenosylmethionine-dependent methyltransferase [Gardnerella
           vaginalis 5-1]
          Length = 345

 Score =  166 bits (419), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 108/317 (34%), Positives = 174/317 (54%), Gaps = 13/317 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMG--SNVIA 63
           M+ A+      H PVLL+  + L+ P+    G +++D T G  G++ +F K    + +I 
Sbjct: 1   MTDAMKDITAIHAPVLLQDCVDLVTPSLQHKGAIVVDCTLGLAGHATAFLKAAPFATLIG 60

Query: 64  LDRDPFAVSCGQETMRD--YKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQI 118
           +DRD  A+S   + MR    + +F    A F ++ + + +  +D +     DLG+SS+QI
Sbjct: 61  IDRDSEALSLATQRMRSEGLENRFIPAHAAFDEIDEVLQENSIDRIDAAFMDLGLSSLQI 120

Query: 119 DCGDRGFSFQKSGPLDMRMSCSGISASDVVNQA-NVKDLTRILGILGEEKQASRIAHAIV 177
           D  DRGFS+     LDMRM  +  + +  +    + ++LTRI    GEE+ AS IA  IV
Sbjct: 121 DETDRGFSYSHDTALDMRMDTTQATTAATILATYDSRELTRIFREYGEERFASPIARRIV 180

Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
           + R + P  T+  L SL+   +  +     +PA R FQALRI VN E+++L++ L     
Sbjct: 181 EVRATEPIATSGQLVSLVDSVIPKAHRATGNPAKRVFQALRIEVNGELDKLSRTLPKIAL 240

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFF-ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296
            L+  G L+V S+HSLED  VK+F     +  V A   +IP +A P  F+++T+  +  +
Sbjct: 241 HLREHGRLVVESYHSLEDTAVKRFMNQGLTVDVPANMPVIPDDAQP-FFKALTRGAMKAS 299

Query: 297 QEDVAFNRRSRSAKLRA 313
           +E++  N RS S +LRA
Sbjct: 300 KEEIVHNTRSSSVRLRA 316


>gi|255536597|ref|YP_003096968.1| S-adenosyl-methyltransferase mraW [Flavobacteriaceae bacterium
           3519-10]
 gi|255342793|gb|ACU08906.1| S-adenosyl-methyltransferase mraW [Flavobacteriaceae bacterium
           3519-10]
          Length = 297

 Score =  166 bits (419), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 106/304 (34%), Positives = 165/304 (54%), Gaps = 17/304 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H PVLL + +  L   P  + +D TFG GG+S +  +  S+   + + D+D   +   + 
Sbjct: 3   HNPVLLTRSVDDLVTNPDGIYVDVTFGGGGHSAAILRKLSSKGRLFSFDQD---LDALKN 59

Query: 77  TMRDYKEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           T+ D  ++F+L    F  L++ +     KGVDGV+ DLGVSS Q D  +RGFS +   PL
Sbjct: 60  TIED--DRFTLINQNFRFLENSLMVYGIKGVDGVLADLGVSSHQFDAAERGFSTRSDAPL 117

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+    + A  V+N+   + L  I    GE ++A ++A  IV  R+  P +TT+DL 
Sbjct: 118 DMRMNVLQPLDAKKVINEYEEEQLADIFYYYGELREARKLAREIVHHRKLKPIETTEDLK 177

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            L      F +N       + FQA+RI VN E+E L + L  +   LK  G L+V+S+HS
Sbjct: 178 KLFSYIPQFKQNKFF---AQVFQAVRIEVNQELEVLKEMLVQSYNILKPNGRLVVISYHS 234

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDRLVK++  +   +    R +  +      F+ +  K V+P   ++  N R+RSAK+R
Sbjct: 235 LEDRLVKRYLKNGMFEGEPARDIYGN--FQKTFELLQTKAVIPDATEIEENSRARSAKMR 292

Query: 313 AGMR 316
            G++
Sbjct: 293 VGIK 296


>gi|223043777|ref|ZP_03613820.1| S-adenosyl-methyltransferase MraW [Staphylococcus capitis SK14]
 gi|222442874|gb|EEE48976.1| S-adenosyl-methyltransferase MraW [Staphylococcus capitis SK14]
          Length = 311

 Score =  166 bits (419), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 101/305 (33%), Positives = 164/305 (53%), Gaps = 11/305 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           HV V+L + I  LN     V +D T G  G++       ++   +IA+D+D  A+   + 
Sbjct: 4   HVSVMLNETIDYLNIKEDGVYVDCTLGGAGHALYLLNQLNDEGRLIAIDQDLTALENAKV 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++++  + +     F +L + + D   + VDG+ +DLGVSS Q+D  +RGFS+     L
Sbjct: 64  VLKEHLHKVTFVHNNFRELTNILKDLNIEKVDGIYYDLGVSSPQLDVPERGFSYHHDAKL 123

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     +SA +VVN+ + + L +I    GEEK + +IA  I   R+  P +TT  L 
Sbjct: 124 DMRMDQTQSLSAYEVVNEWSYEALVKIFYRYGEEKFSKQIARRIEANREQHPIETTLQLV 183

Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I++ +   ++    HPA R FQA+RI VN+E+      +  A +++   G + V++FH
Sbjct: 184 DIIKEGIPAKARRKGGHPAKRVFQAIRIAVNDELSAFEDSIEQAIESVNVNGRISVITFH 243

Query: 252 SLEDRLVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDRL K+ F          R   +IP    P + + + +K +  T+ED+  N R+RSA
Sbjct: 244 SLEDRLCKQIFQEYEKGPEVPRGIPIIPEGYSPKL-KRVNRKPITATEEDLDENNRARSA 302

Query: 310 KLRAG 314
           KLR  
Sbjct: 303 KLRVA 307


>gi|291320327|ref|YP_003515589.1| S adenosyl methyltransferase [Mycoplasma agalactiae]
 gi|290752660|emb|CBH40633.1| S adenosyl methyltransferase [Mycoplasma agalactiae]
          Length = 300

 Score =  166 bits (419), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 107/306 (34%), Positives = 164/306 (53%), Gaps = 17/306 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H+P+LL + I  LN     + LD T G GG+S    K   N  ++  D+D FA+   ++ 
Sbjct: 5   HIPILLNEAIESLNIKSNGIYLDLTVGMGGHSSEILKRLKNGLLVGFDKDLFAIEESRKR 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +      F L  + F+ + D +       VDG++ DLG+SS Q+D  +RGFS+ K   LD
Sbjct: 65  LSKIGSNFQLIHSDFNNVADELAKLNISAVDGILVDLGISSPQVDNAERGFSYSKDARLD 124

Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM+ +  + A  VVN  +  +L  I     E K A ++A+AI+K+R   P  TT +L+ 
Sbjct: 125 MRMNTNQALDAHFVVNNYSEDELITIFYNYAEVKLAKQVANAIIKKR---PINTTLELAE 181

Query: 194 LIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +I K+ Y +K   + +P    FQA+RI VNNE   +   L  A   LK    L +++FHS
Sbjct: 182 VI-KSAYPAKLLSLKNPCKAVFQAIRIEVNNEFSSINSMLVQALNLLKKDSSLAIITFHS 240

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LED ++KKFF    G ++  +H  PS       +    KV  P++ +++ N RSRSAKLR
Sbjct: 241 LEDSIIKKFF----GNLIKSKH--PSKMPINEEKKYIVKVYSPSKAEISENNRSRSAKLR 294

Query: 313 AGMRTV 318
              + +
Sbjct: 295 VLTKLI 300


>gi|291547133|emb|CBL20241.1| S-adenosyl-methyltransferase MraW [Ruminococcus sp. SR1/5]
          Length = 311

 Score =  166 bits (419), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 104/302 (34%), Positives = 162/302 (53%), Gaps = 10/302 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H  VLL + I  L   P  + +D T G  G++   CK  S     I +D+D  A+    E
Sbjct: 5   HKSVLLNETIDGLRVKPDGIYVDGTLGGAGHATEVCKKLSAKGRFIGIDQDQDAIIAASE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  +  Q ++ ++ +  + D +  +G   VDG++ DLGVSS Q+D  +RGFS++   PL
Sbjct: 65  RLSAFN-QVTIIRSNYCYMADELRSRGIEKVDGILLDLGVSSYQLDNEERGFSYRYDSPL 123

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM      +A D+VN    ++L RI+   GE+K A  IA  IV  R+ AP +TT +L+
Sbjct: 124 DMRMDRRQSRTAGDIVNGYEERELYRIIRDYGEDKFAKNIAKHIVAAREQAPIRTTGELT 183

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  +    +    HPA R+FQA+RI +N E++ L   L      L  GG + +++FH
Sbjct: 184 EIIRGAIPMKIQATGGHPAKRTFQAIRIELNRELDVLRDSLDGMIDLLDDGGRICIITFH 243

Query: 252 SLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK  F              +      +  + IT+K ++P +E++  N RS+SAK
Sbjct: 244 SLEDRIVKTIFRKNENPCTCPPDFPVCVCGKKSKGKVITRKPILPGKEEMEENPRSKSAK 303

Query: 311 LR 312
           LR
Sbjct: 304 LR 305


>gi|320527513|ref|ZP_08028693.1| S-adenosyl-methyltransferase MraW [Solobacterium moorei F0204]
 gi|320132070|gb|EFW24620.1| S-adenosyl-methyltransferase MraW [Solobacterium moorei F0204]
          Length = 311

 Score =  166 bits (419), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 114/304 (37%), Positives = 165/304 (54%), Gaps = 13/304 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGS-NVIALDRDPFAVSCGQET 77
           H  VLL++ +  LN     + +D T G GG+S     K+ S ++ A D+D  A++   E 
Sbjct: 3   HTSVLLKETVDSLNVKEDGIYVDGTLGRGGHSGYLISKLKSGHLYAFDKDSQAIAESTEN 62

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++D     ++    F  +++ +  +G   V+G++ DLGVSS Q D   RGFS++    LD
Sbjct: 63  LKDVLPYITMIHNDFRSMKEELAKRGIYEVNGIMMDLGVSSPQFDDPTRGFSYRYDARLD 122

Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM+    + A  VVN  + ++L RIL   GEEK    IA AI K+R   P +TT  L  
Sbjct: 123 MRMNQEQELDAYQVVNTYSFEELCRILREYGEEKFTKSIARAIEKQRAIQPIETTFQLVD 182

Query: 194 LIQKTVYFSK--NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           +I K+    K    + HPA ++FQALRI VN+E+  L +GL  A   LK  G   +++FH
Sbjct: 183 VI-KSALPDKVLRQKGHPAKQTFQALRIEVNDELGALQKGLEEALSILKPNGRCAIITFH 241

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP---SNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SLEDR+VK  F   S     +   IP   S+   A +  ITKK +  T E++  N RS S
Sbjct: 242 SLEDRMVKNVFKEYSS-APYIDPRIPIKASDIKQADYNLITKKPITATDEELDENHRSHS 300

Query: 309 AKLR 312
           AKLR
Sbjct: 301 AKLR 304


>gi|167745322|ref|ZP_02417449.1| hypothetical protein ANACAC_00013 [Anaerostipes caccae DSM 14662]
 gi|167655043|gb|EDR99172.1| hypothetical protein ANACAC_00013 [Anaerostipes caccae DSM 14662]
          Length = 311

 Score =  166 bits (419), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 102/307 (33%), Positives = 167/307 (54%), Gaps = 9/307 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
           +H  VLL++ I  L   P  + +D T G GG++       S     I +D+D  A+    
Sbjct: 4   EHASVLLDETIRELKIKPDGIYVDGTLGGGGHAFHVLNRLSEKGRYIGIDQDEDAIRAST 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + +  ++++ ++ +  +  +   + D G   VDG++ DLGVSS Q+D  DRGF++++  P
Sbjct: 64  KRLAPFQDKVTIVRDNYVNMPKVLKDLGISRVDGILLDLGVSSFQLDEKDRGFTYREDVP 123

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM      SA D+VN  + ++L  I+   GE+K A  IA  I   R+ AP +TT  L
Sbjct: 124 LDMRMDQRQTFSARDIVNGYSEQELFHIIRDYGEDKFAKNIAKHIAAEREKAPIETTGQL 183

Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+  +    +    HPA R+FQA+RI  N E+E L   L    + L   G L +++F
Sbjct: 184 IEVIKHAIPMKVRAVGGHPAKRTFQAIRIECNRELEVLKTSLDQMIELLNPEGRLCIITF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK+ F           +  I +  + +  + IT+K ++PT+E++  N+R++S+
Sbjct: 244 HSLEDRIVKRAFRKNENPCTCPPNFPICTCGNESKGKVITRKPIIPTEEELMRNKRAKSS 303

Query: 310 KLRAGMR 316
           KLR   R
Sbjct: 304 KLRVFER 310


>gi|332522739|ref|ZP_08398991.1| S-adenosyl-methyltransferase MraW [Streptococcus porcinus str.
           Jelinkova 176]
 gi|332314003|gb|EGJ26988.1| S-adenosyl-methyltransferase MraW [Streptococcus porcinus str.
           Jelinkova 176]
          Length = 316

 Score =  166 bits (419), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 108/311 (34%), Positives = 173/311 (55%), Gaps = 18/311 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76
           H+ VLL + + +L   P  + +DAT G  G+S    S      ++   D+D  A+   Q 
Sbjct: 7   HITVLLHETVDMLRVKPDGIYVDATLGGAGHSAYLLSQLNEHGHLYCFDQDQKAIDNAQI 66

Query: 77  TMRDYKEQ--FSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  + E+   +  +  F  L+  +   GVD   G+++DLGVSS Q+D  +RGFS+++  
Sbjct: 67  FLAPFIEKGMVTFIKDNFRHLKSQMQAHGVDSIDGILYDLGVSSPQLDERERGFSYRQDA 126

Query: 132 PLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM S + ++A  VVN  +  DL RI    GE++ + +IA  I + R   P +TT +
Sbjct: 127 PLDMRMDSDASLTAYHVVNDYSFNDLVRIFFRYGEDRFSKQIARKIEQARAIKPIETTTE 186

Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L+ LI K+   +K    + HPA + FQA+RI VN+E+    + L+ A   L   G + V+
Sbjct: 187 LAELI-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAAEESLQQAMDLLAVEGHISVI 245

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH---MIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           +FHSLEDRL K+ F  +   V+ V      IP    P  F+ +++K ++P++E++A N R
Sbjct: 246 TFHSLEDRLTKQLF--KEASVVDVPKGIPFIPEEMQPK-FELVSRKPILPSKEELAENNR 302

Query: 306 SRSAKLRAGMR 316
           + SAKLR   +
Sbjct: 303 AHSAKLRVARK 313


>gi|37522496|ref|NP_925873.1| hypothetical protein glr2927 [Gloeobacter violaceus PCC 7421]
 gi|42559444|sp|Q7NCQ1|RSMH_GLOVI RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|35213497|dbj|BAC90868.1| glr2927 [Gloeobacter violaceus PCC 7421]
          Length = 314

 Score =  166 bits (419), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 100/243 (41%), Positives = 143/243 (58%), Gaps = 10/243 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETM 78
           H  VLLE+ I  L   PG + LDAT G GG+S +  +  S  V+ALD+D  A++  +  +
Sbjct: 30  HRSVLLEETIVGLQVHPGGLYLDATVGLGGHSEAILRTESTRVVALDQDEDALAQARLRL 89

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138
             + E+       F++ +    ++  DG+V DLGVSSMQ+D  +RGFS++   PLDMRM 
Sbjct: 90  APFGERVRFEHINFAEFEPG--EERFDGIVADLGVSSMQLDSPERGFSWRFESPLDMRMD 147

Query: 139 CSGI--SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
             G   +A+D+VN  + + L+ +    GEE+ + RIA  IV+RR   P +TT +L++++ 
Sbjct: 148 GGGEAETAADLVNTCSAEQLSDLFWRYGEERFSRRIARRIVERR---PLRTTTELAAVVA 204

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
             +       IHPATR FQALRI VN E+  L   L  +   L  GG L V+SFHSLEDR
Sbjct: 205 SAI--PTRQPIHPATRVFQALRIAVNGEVAALETFLERSPDWLVPGGRLAVISFHSLEDR 262

Query: 257 LVK 259
            VK
Sbjct: 263 PVK 265


>gi|311114349|ref|YP_003985570.1| S-adenosyl-methyltransferase MraW [Gardnerella vaginalis ATCC
           14019]
 gi|310945843|gb|ADP38547.1| S-adenosyl-methyltransferase MraW [Gardnerella vaginalis ATCC
           14019]
          Length = 358

 Score =  165 bits (418), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 107/306 (34%), Positives = 168/306 (54%), Gaps = 13/306 (4%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74
           H PVLL+  + L++PA      V++D T G  G++ +F K    + ++ +DRD  A+   
Sbjct: 13  HAPVLLDDCVNLVSPALNHKNSVVVDCTLGLAGHATAFLKSAPLATLVGIDRDGEALELA 72

Query: 75  QETMRD--YKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQK 129
            + MR+    E+F    A F ++   + D  +   D    DLG+SS+QID  DRGFS+  
Sbjct: 73  IKRMREEGLDERFIPVHAAFDEVDKVLEDLAIYHIDAAFMDLGLSSLQIDEEDRGFSYSH 132

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           +  LDMRM  +  I+A+ ++   +   L  I    G+E+ +  IA  IV+ R+  P  T+
Sbjct: 133 NTALDMRMDTTQSITAATILATYDSHKLANIFREYGQERFSGPIARKIVQVREETPITTS 192

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L  L+   +  S     +PA R FQALRI VN E+++LA+ L      L  GG ++V 
Sbjct: 193 GQLVELVDNVIPRSHRAPGNPAKRVFQALRIEVNGELDKLARTLPKLALRLNQGGRIVVE 252

Query: 249 SFHSLEDRLVKKFFAS-RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           S+HSLED  VK+F  +     V A   ++P++A P  F+S+T+  V  ++E++A N RS 
Sbjct: 253 SYHSLEDIAVKRFMNNGLEVDVPANMPIVPADAQP-FFRSLTRGAVKASKEEIANNTRSS 311

Query: 308 SAKLRA 313
           S +LRA
Sbjct: 312 SVRLRA 317


>gi|168023286|ref|XP_001764169.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162684609|gb|EDQ71010.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 329

 Score =  165 bits (418), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 114/323 (35%), Positives = 165/323 (51%), Gaps = 30/323 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCGQ- 75
           HV VLL +V+A          +D T GA G++ +  +    +   I  D DP A S  + 
Sbjct: 3   HVAVLLNEVLAKFRDRRILSFVDCTLGAAGHASAILREHPELESFIGFDVDPVAHSEAKP 62

Query: 76  --ETMRDYKEQFSLFQATFSQLQDYVP-------DKGVDGVVFDLGVSSMQIDCGDRGFS 126
             + M     Q  L    F  ++  V         +GV+G++ DLG+SSMQ+D  +RGFS
Sbjct: 63  RLQAMASSDVQLHLVLTNFRNIKKAVNGADAKLVHEGVNGILMDLGMSSMQVDMAERGFS 122

Query: 127 FQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           F K GP DMRM  S  ++A +++N+    ++ RIL   GEEK+   +A  IV +R +   
Sbjct: 123 FMKDGPADMRMDPSASLTAEEILNKWPEAEVARILRDYGEEKRWKHLARKIVDKRLAGGI 182

Query: 186 QTTQDLSSLIQKTVYF--SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
            +T +L  +I    +    K   +HPATR+FQALRI VN+E+  L   L  A   L   G
Sbjct: 183 HSTSELVKVIGGNTFGRPGKGKAVHPATRTFQALRIAVNDELRTLETALADAFDLLAPKG 242

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQ-------------SIT 289
            L V+SFHSLEDR+VK+FF   +G   AV  + + S      F               +T
Sbjct: 243 RLAVISFHSLEDRIVKRFFLKAAGIGQAVEDNEMGSEPQGDDFSLRDKNVLEGSIGVVLT 302

Query: 290 KKVVVPTQEDVAFNRRSRSAKLR 312
           K+ +V   +++  N RSRSAKLR
Sbjct: 303 KRPIVAEADEINTNPRSRSAKLR 325


>gi|313890654|ref|ZP_07824281.1| S-adenosyl-methyltransferase MraW [Streptococcus pseudoporcinus
           SPIN 20026]
 gi|313120965|gb|EFR44077.1| S-adenosyl-methyltransferase MraW [Streptococcus pseudoporcinus
           SPIN 20026]
          Length = 316

 Score =  165 bits (418), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 106/311 (34%), Positives = 172/311 (55%), Gaps = 18/311 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H+ VLL + + +L   P  + +DAT G  G+S           ++   D+D  A+   Q 
Sbjct: 7   HITVLLHETVDMLQVKPDGIYVDATLGGAGHSAYLLSQLNEHGHLYCFDQDQKAIDNAQV 66

Query: 77  TMRDYKEQ--FSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  + E+   +  +  F  L+  +   GVD   G+++DLGVSS Q+D  +RGFS+++  
Sbjct: 67  FLAPFIEKGMVTFIKDNFRHLKSQMQAHGVDFIDGILYDLGVSSPQLDERERGFSYRQDA 126

Query: 132 PLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM S + ++A  VVN  +  DL RI    GE++ + ++A  I + R   P +TT +
Sbjct: 127 PLDMRMDSDASLTAYQVVNDYSFNDLVRIFFRYGEDRFSKQVARKIEQARAIKPIETTAE 186

Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L+ LI K+   +K    + HPA + FQA+RI VN+E+    + L+ A   L   G + V+
Sbjct: 187 LAELI-KSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAAEESLQQAMDVLALEGRISVI 245

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH---MIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           +FHSLEDRL K+ F  +   V+ V      IP    P  F+ +++K ++P++E++A N R
Sbjct: 246 TFHSLEDRLTKQLF--KEASVVDVPKGLPFIPEEMQPK-FELVSRKPILPSKEELAENNR 302

Query: 306 SRSAKLRAGMR 316
           + SAKLR   +
Sbjct: 303 AHSAKLRVAKK 313


>gi|255348632|ref|ZP_05380639.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis 70]
 gi|255503172|ref|ZP_05381562.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis 70s]
 gi|255506850|ref|ZP_05382489.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis D(s)2923]
 gi|289525311|emb|CBJ14787.1| S-adenosyl-L-methionine-dependent methyltransferase [Chlamydia
           trachomatis Sweden2]
 gi|296434861|gb|ADH17039.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis E/150]
 gi|296438581|gb|ADH20734.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis E/11023]
          Length = 300

 Score =  165 bits (418), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 112/311 (36%), Positives = 165/311 (53%), Gaps = 24/311 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALD---RDPFAVSCGQE 76
           H+PVL+++ ++L       V  D T GAGG++ +F     ++   D   RD  A++  + 
Sbjct: 7   HIPVLVKESLSLFRDRNPVVFCDVTVGAGGHAEAFLTEFPSIERYDGSDRDLSALALSEN 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ-KSGPLDM 135
            +  +K++  L  A+F ++     D   DGV+ DLGVSSMQ++  +RGFSFQ +  PLDM
Sbjct: 67  RLLPFKDRVRLRHASFEEVDTLTSDGTYDGVLADLGVSSMQLNNLERGFSFQGEDHPLDM 126

Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM  S G++AS+V+N    +++  I    GEE      A A+V  R+     T +DL   
Sbjct: 127 RMDTSRGMTASEVLNSLREEEIGEIFRNYGEESLWRSAAAAVVHFRKKKKILTVKDLKDA 186

Query: 195 IQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
                  +    +IHP T  FQALRI+VN E  +L   L SA + L+ GG L V+SF SL
Sbjct: 187 TSGVFPSYRLRKKIHPLTLIFQALRIYVNQEGAQLKVLLDSAFRWLRPGGRLAVISFCSL 246

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           +DR VK  F     + +               + +TKKV++P+ E+   N RSRSAKLR 
Sbjct: 247 DDRPVKWAFREAEARGLG--------------KILTKKVIMPSYEETRMNPRSRSAKLRC 292

Query: 314 GMRTVERSIED 324
                E+S ED
Sbjct: 293 ----FEKSFED 299


>gi|228472692|ref|ZP_04057452.1| S-adenosyl-methyltransferase MraW [Capnocytophaga gingivalis ATCC
           33624]
 gi|228276105|gb|EEK14861.1| S-adenosyl-methyltransferase MraW [Capnocytophaga gingivalis ATCC
           33624]
          Length = 305

 Score =  165 bits (418), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 115/309 (37%), Positives = 172/309 (55%), Gaps = 23/309 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H+PVLL++ I  L+  P    +D TFG GG+SR+  +  S    + A D+DP A +    
Sbjct: 7   HIPVLLQECIEGLSIDPAGTYVDVTFGGGGHSRAILERLSPQGRLFAFDQDPQAQA---N 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + D  ++F+L    F  ++ ++   GV    GV+ D GVSS Q D  +RGFS +  G L
Sbjct: 64  AIAD--DRFTLIGQNFRHIKRFLRFYGVKEVSGVLGDFGVSSHQFDTAERGFSIRMEGEL 121

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+    +SA +VVN  + ++L+ I    GE  Q+ ++A AIV+RR++AP  TT DL 
Sbjct: 122 DMRMNPEQPLSAKEVVNGYSQEELSEIFFRYGELSQSRKLAQAIVQRRETAPIATTADLK 181

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            ++QK  YF KN       + +QA+RI VN E+  L + L      +K  G + ++S+HS
Sbjct: 182 EVVQK--YFPKNQENKHLAQLYQAIRIEVNQELSALEELLLQLPDIVKPMGRIALISYHS 239

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV---VVPTQEDVAFNRRSRSA 309
           LEDRL+K+F   R G+        P        Q   +KV   ++PT E++A N R+RSA
Sbjct: 240 LEDRLIKRFI--RDGQFSGE----PEKDFYGNIQVPFRKVGKPILPTAEEIARNNRARSA 293

Query: 310 KLRAGMRTV 318
           KLR   R +
Sbjct: 294 KLRVAERVL 302


>gi|314933355|ref|ZP_07840720.1| S-adenosyl-methyltransferase MraW [Staphylococcus caprae C87]
 gi|313653505|gb|EFS17262.1| S-adenosyl-methyltransferase MraW [Staphylococcus caprae C87]
          Length = 311

 Score =  165 bits (418), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 101/305 (33%), Positives = 165/305 (54%), Gaps = 11/305 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           HV V+L + I  LN     V +D T G  G++       ++   +IA+D+D  A+   + 
Sbjct: 4   HVSVMLNETIDYLNIKEDGVYVDCTLGGAGHALYLLNQLNDEGRLIAIDQDLTALENAKV 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++++  + +   + F +L + + D   + VDG+ +DLGVSS Q+D  +RGFS+     L
Sbjct: 64  VLKEHLHKVTFVHSNFRELTNILKDLNIEKVDGIYYDLGVSSPQLDVPERGFSYHHDAKL 123

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     +SA +VVN+ + + L +I    GEEK + +IA  I   R+  P +TT  L 
Sbjct: 124 DMRMDQTQSLSAFEVVNEWSYEALVKIFYRYGEEKFSKQIARRIEANREQHPIETTLQLV 183

Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I++ +   ++    HPA R FQA+RI VN+E+      +  A +++   G + V++FH
Sbjct: 184 DVIKEGIPAKARRKGGHPAKRVFQAIRIAVNDELSAFEDSIEQAIESVNINGRISVITFH 243

Query: 252 SLEDRLVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDRL K+ F          R   +IP    P + + + +K +  T+ED+  N R+RSA
Sbjct: 244 SLEDRLCKQIFQEYEKGPEVPRGIPIIPEGYSPKL-KRVNRKPITATEEDLDENNRARSA 302

Query: 310 KLRAG 314
           KLR  
Sbjct: 303 KLRVA 307


>gi|87161763|ref|YP_493770.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|88194885|ref|YP_499685.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|253731798|ref|ZP_04865963.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|87127737|gb|ABD22251.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|87202443|gb|ABD30253.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|253724469|gb|EES93198.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|298694470|gb|ADI97692.1| S-adenosyl-methyltransferase [Staphylococcus aureus subsp. aureus
           ED133]
 gi|302751002|gb|ADL65179.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus str. JKD6008]
 gi|320141006|gb|EFW32853.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus MRSA131]
 gi|320143062|gb|EFW34852.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus MRSA177]
          Length = 304

 Score =  165 bits (418), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 100/301 (33%), Positives = 161/301 (53%), Gaps = 11/301 (3%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETMRD 80
           +L + I  LN     V +D T G  G++       ++   +IA+D+D  A+   +E ++D
Sbjct: 1   MLNETIDYLNVKENGVYIDCTLGGAGHALYLLNQLNDDGRLIAIDQDQTAIDNAKEVLKD 60

Query: 81  YKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
           +  + +   + F +L   + D   + VDG+ +DLGVSS Q+D  +RGFS+     LDMRM
Sbjct: 61  HLHKVTFVHSNFRELTQILKDLNIEKVDGIYYDLGVSSPQLDIPERGFSYHHDATLDMRM 120

Query: 138 S-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
                ++A ++VN  + + L +I    GEEK + +IA  I   R+  P  TT +L  +I+
Sbjct: 121 DQTQELTAYEIVNNWSYEALVKIFYRYGEEKFSKQIARRIEAHREQQPITTTLELVDIIK 180

Query: 197 KTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           + +   ++    HPA R FQALRI VN+E+      +  A + +K  G + V++FHSLED
Sbjct: 181 EGIPAKARRKGGHPAKRVFQALRIAVNDELSAFEDSIEQAIELVKVDGRISVITFHSLED 240

Query: 256 RLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           RL K+ F          R +  IP  A+    + + +K +  T+ED+  N R+RSAKLR 
Sbjct: 241 RLCKQVFQEYEKGPEVPRGLPVIPE-AYTPKLKRVNRKPITATEEDLDDNNRARSAKLRV 299

Query: 314 G 314
            
Sbjct: 300 A 300


>gi|76788170|ref|YP_329009.1| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae A909]
 gi|161485617|ref|NP_687320.2| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae
           2603V/R]
 gi|30173046|sp|Q8E1R8|RSMH_STRA5 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|88909222|sp|Q3K394|RSMH_STRA1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|76563227|gb|ABA45811.1| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae A909]
          Length = 315

 Score =  165 bits (418), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 104/308 (33%), Positives = 170/308 (55%), Gaps = 12/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQE 76
           H+ VLL + + +L+  P  + +DAT G  G+S     ++G +  + A D+D  A+     
Sbjct: 7   HITVLLHETVDMLDIKPDGIYVDATLGGAGHSEYLLSQLGPDGHLYAFDQDQKAIDNAHI 66

Query: 77  TMRDYKE--QFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            ++ Y +  Q +  +  F  L   +   GV   +G+ +DLGVSS Q+D  +RGFS+++  
Sbjct: 67  RLKKYVDTGQVTFIKDNFRNLSSNLKALGVSEINGICYDLGVSSPQLDERERGFSYKQDA 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+    ++A DVVN  +  DL RI    GE+K + +IA  I + R      TT +
Sbjct: 127 PLDMRMNREQSLTAYDVVNTYSYHDLVRIFFKYGEDKFSKQIARKIEQVRAEKTISTTTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I+ +    +   + HPA + FQA+RI VN+E+    + ++ A   L   G + V++
Sbjct: 187 LAEIIKSSKSAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDLLAVDGRISVIT 246

Query: 250 FHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDRL K+ F   S  +V      IP +  P + + + +K ++P+QE++  N R+ S
Sbjct: 247 FHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLQPKM-ELVNRKPILPSQEELEANNRAHS 305

Query: 309 AKLRAGMR 316
           AKLR   R
Sbjct: 306 AKLRVARR 313


>gi|308235562|ref|ZP_07666299.1| S-adenosyl-methyltransferase MraW [Gardnerella vaginalis ATCC
           14018]
          Length = 353

 Score =  165 bits (418), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 107/306 (34%), Positives = 168/306 (54%), Gaps = 13/306 (4%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74
           H PVLL+  + L++PA      V++D T G  G++ +F K    + ++ +DRD  A+   
Sbjct: 8   HAPVLLDDCVNLVSPALNHKNSVVVDCTLGLAGHATAFLKSAPLATLVGIDRDGEALELA 67

Query: 75  QETMRD--YKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQK 129
            + MR+    E+F    A F ++   + D  +   D    DLG+SS+QID  DRGFS+  
Sbjct: 68  IKRMREEGLDERFIPVHAAFDEVDKVLEDLAIYHIDAAFMDLGLSSLQIDEEDRGFSYSH 127

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           +  LDMRM  +  I+A+ ++   +   L  I    G+E+ +  IA  IV+ R+  P  T+
Sbjct: 128 NTALDMRMDTTQSITAATILATYDSHKLANIFREYGQERFSGPIARKIVQVREETPITTS 187

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L  L+   +  S     +PA R FQALRI VN E+++LA+ L      L  GG ++V 
Sbjct: 188 GQLVELVDNVIPRSHRAPGNPAKRVFQALRIEVNGELDKLARTLPKLALRLNQGGRIVVE 247

Query: 249 SFHSLEDRLVKKFFAS-RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           S+HSLED  VK+F  +     V A   ++P++A P  F+S+T+  V  ++E++A N RS 
Sbjct: 248 SYHSLEDIAVKRFMNNGLEVDVPANMPIVPADAQP-FFRSLTRGAVKASKEEIANNTRSS 306

Query: 308 SAKLRA 313
           S +LRA
Sbjct: 307 SVRLRA 312


>gi|150021597|ref|YP_001306951.1| S-adenosyl-methyltransferase MraW [Thermosipho melanesiensis BI429]
 gi|262825837|sp|A6LNR5|RSMH_THEM4 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|149794118|gb|ABR31566.1| S-adenosyl-methyltransferase MraW [Thermosipho melanesiensis BI429]
          Length = 291

 Score =  165 bits (417), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 109/305 (35%), Positives = 169/305 (55%), Gaps = 30/305 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77
           H+PVL  +V+  L      + +D T G GG++    K    S VIA+D D   +   Q+ 
Sbjct: 8   HIPVLPNEVVEYLLWKDNGIYVDCTAGEGGHTFLIAKKCPNSRVIAIDVDLEVLEIAQKN 67

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++ +     L +A++  L   +   G++   G++ DLG+S+ Q+    RGFSF +  PLD
Sbjct: 68  LKAF-HNVILLKASYVDLPVVLKSLGIERVSGILADLGISTYQLKAEGRGFSFNRDEPLD 126

Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM      SA  + N  + + L++I+   GEE+ A RIA  IVK R   P  TT++L  
Sbjct: 127 MRMDIQQDTSAHKITNFYSEEKLSKIIFKYGEERFARRIAKQIVKNR---PINTTKELVE 183

Query: 194 LIQKTVYFS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           +I+K +  S  +  + H AT++FQA+RI VN E++ + Q L++AE+ L+ GG L ++SFH
Sbjct: 184 IIKKALPPSEIRKRKRHFATKTFQAIRIEVNKELKNIEQLLKNAEELLEIGGRLAIISFH 243

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+VK F  + +     ++H+    A P          + PTQE+   N R+RSAKL
Sbjct: 244 SLEDRIVKHFIKNSNN----LKHI----AGP----------IKPTQEETKNNPRARSAKL 285

Query: 312 RAGMR 316
           R   R
Sbjct: 286 RVAER 290


>gi|15835162|ref|NP_296921.1| S-adenosyl-methyltransferase MraW [Chlamydia muridarum Nigg]
 gi|270285334|ref|ZP_06194728.1| S-adenosyl-methyltransferase MraW [Chlamydia muridarum Nigg]
 gi|270289350|ref|ZP_06195652.1| S-adenosyl-methyltransferase MraW [Chlamydia muridarum Weiss]
 gi|301336731|ref|ZP_07224933.1| S-adenosyl-methyltransferase MraW [Chlamydia muridarum MopnTet14]
 gi|20139249|sp|Q9PKC2|RSMH_CHLMU RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|7190584|gb|AAF39384.1| conserved hypothetical protein [Chlamydia muridarum Nigg]
          Length = 302

 Score =  165 bits (417), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 114/314 (36%), Positives = 167/314 (53%), Gaps = 28/314 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALD---RDPFAVSCGQE 76
           H+PVL+++ ++L          D T GAGG++ +F     ++   D   RD  A++  ++
Sbjct: 7   HIPVLVKESLSLFQDQHPTTFCDVTVGAGGHAEAFLTSFPSIEHYDGSDRDLSALALSEK 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ-KSGPLDM 135
            +  +K +  L  A+F ++    PD   DGV+ DLGVSSMQ+   +RGFSFQ +  PLDM
Sbjct: 67  RLLPFKGRVCLRHASFDEVNALTPDGMYDGVLADLGVSSMQLTDLERGFSFQGEDHPLDM 126

Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM  S GI+AS+V+N    +++  I    GEE      A+A+V  R+     T +DL   
Sbjct: 127 RMDTSRGITASEVLNSLREEEIGEIFRKYGEEPLWRSAANAVVHFRKKKKILTVKDLKDA 186

Query: 195 IQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
                  +    +IHP T  FQALRI+VN E  +L   L SA + L+ GG L ++SF SL
Sbjct: 187 TSGVFPSYRLRKKIHPLTLIFQALRIYVNQEGAQLKVLLDSALRWLRPGGRLAIISFCSL 246

Query: 254 EDRLVKKFF----ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           +DR VK  F    A   G+V+                  TKKV++PT E+   N RSRSA
Sbjct: 247 DDRPVKWAFREAEARGEGRVL------------------TKKVIMPTYEETRKNPRSRSA 288

Query: 310 KLRAGMRTVERSIE 323
           KLR   ++++ S E
Sbjct: 289 KLRCFEKSLKISDE 302


>gi|119358493|ref|YP_913137.1| S-adenosyl-methyltransferase MraW [Chlorobium phaeobacteroides DSM
           266]
 gi|263446010|sp|A1BJY6|RSMH_CHLPD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|119355842|gb|ABL66713.1| S-adenosyl-methyltransferase MraW [Chlorobium phaeobacteroides DSM
           266]
          Length = 329

 Score =  165 bits (417), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 107/311 (34%), Positives = 163/311 (52%), Gaps = 19/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--------GSNVIALDRDPFAV 71
           H PVL  +V   L   PG + +D T G GG++ +  +          S +I +D+D  A+
Sbjct: 7   HEPVLAAQVTDFLVLRPG-IYIDGTLGGGGHALAIMRALETAGFEKNSLLIGIDQDDEAL 65

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYV----PDKGV----DGVVFDLGVSSMQIDCGDR 123
                T+  YKE   L +  FS ++  +      +G+     G++ DLGVSS QID   R
Sbjct: 66  HAASTTLSWYKETTVLVKGNFSDVRSILGKVCKQRGLVSRAAGILLDLGVSSSQIDTAGR 125

Query: 124 GFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GFS+ + GPLDMRM  CS  +A+D+VN  + K+L  +    GEE ++  IA  IV  R+ 
Sbjct: 126 GFSYLQKGPLDMRMDRCSSTTAADIVNTLDEKELAGLFFRYGEEPRSRMIARHIVNYREQ 185

Query: 183 APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
               T  ++ + I +      + +I   +R FQALRI VN E+E L Q L      L   
Sbjct: 186 TGAVTGTEVLAAIIRNAERDPHKQIKTLSRVFQALRIEVNQELEVLKQALSDGVDCLDYH 245

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVA 301
           G + V+S+HSLEDR+VK FF  +S      + + +    H  V   +T+K ++  ++++ 
Sbjct: 246 GRMAVISYHSLEDRIVKSFFVEKSKSDWGPKGVGMREPLHKGVLGLVTRKPLIADEKEIQ 305

Query: 302 FNRRSRSAKLR 312
            N R+RSAKLR
Sbjct: 306 ENPRARSAKLR 316


>gi|331002506|ref|ZP_08326024.1| ribosomal RNA small subunit methyltransferase H 2 [Lachnospiraceae
           oral taxon 107 str. F0167]
 gi|330410322|gb|EGG89756.1| ribosomal RNA small subunit methyltransferase H 2 [Lachnospiraceae
           oral taxon 107 str. F0167]
          Length = 311

 Score =  165 bits (417), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 102/303 (33%), Positives = 170/303 (56%), Gaps = 8/303 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQE 76
           +H  VLL++VI  LN       +D T G GG++    K      +I +D+D  A++   +
Sbjct: 4   NHKSVLLDEVIESLNIKADGYYVDGTLGGGGHALEVVKRLKTGKLIGIDQDMDAINAATQ 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + DY +   + +  +  +++ +  +    VDG+  DLGVSS Q+D  +RGF+++   PL
Sbjct: 64  RLIDYSKSVIIIRDNYVNIENILKKENIEKVDGIYIDLGVSSYQLDNAERGFTYRFDAPL 123

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM   + + ASD+VN+ +  +L  I+   GE++ A  IA  IV+ R     +TT +L 
Sbjct: 124 DMRMDDRNELKASDIVNEYSESELFHIIRDYGEDRFAKNIAKHIVEYRNKKRIETTFELV 183

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+ ++    +    HPA R+FQA+RI +N E+E L   +      LK GG L V++FH
Sbjct: 184 DIIKASIPMKIQVTGGHPAKRTFQAIRIELNKELEVLTDSINVMIDLLKPGGRLSVITFH 243

Query: 252 SLEDRLVKKFF-ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK+ F  + S  V   +  +    + +  + IT+K ++P +E++  N R++SAK
Sbjct: 244 SLEDRIVKQAFKKAESPCVCPKKFPVCVCGNKSKGRVITRKAILPGEEELEENSRAKSAK 303

Query: 311 LRA 313
           LR 
Sbjct: 304 LRV 306


>gi|15604993|ref|NP_219777.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis D/UW-3/CX]
 gi|76788994|ref|YP_328080.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis A/HAR-13]
 gi|237804617|ref|YP_002888771.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|255311073|ref|ZP_05353643.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis 6276]
 gi|255317374|ref|ZP_05358620.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis 6276s]
 gi|20138894|sp|O84274|RSMH_CHLTR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|88909193|sp|Q3KM90|RSMH_CHLTA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|3328685|gb|AAC67865.1| PBP2B Family methyltransferase [Chlamydia trachomatis D/UW-3/CX]
 gi|76167524|gb|AAX50532.1| MraW [Chlamydia trachomatis A/HAR-13]
 gi|231272917|emb|CAX09828.1| S-adenosyl-L-methionine-dependent methyltransferase [Chlamydia
           trachomatis B/TZ1A828/OT]
 gi|296435788|gb|ADH17962.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis G/9768]
 gi|296436713|gb|ADH18883.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis G/11222]
 gi|296437648|gb|ADH19809.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis G/11074]
 gi|297140147|gb|ADH96905.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis G/9301]
 gi|297748402|gb|ADI50948.1| MraW [Chlamydia trachomatis D-EC]
 gi|297749282|gb|ADI51960.1| MraW [Chlamydia trachomatis D-LC]
          Length = 300

 Score =  165 bits (417), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 112/311 (36%), Positives = 165/311 (53%), Gaps = 24/311 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALD---RDPFAVSCGQE 76
           H+PVL+++ ++L       V  D T GAGG++ +F     ++   D   RD  A++  + 
Sbjct: 7   HIPVLVKESLSLFRDRNPVVFCDVTVGAGGHAEAFLTEFPSIERYDGSDRDLSALALSEN 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ-KSGPLDM 135
            +  +K++  L  A+F ++     D   DGV+ DLGVSSMQ++  +RGFSFQ +  PLDM
Sbjct: 67  RLLPFKDRVRLRHASFEEVDTLTSDGTYDGVLADLGVSSMQLNNLERGFSFQGEDHPLDM 126

Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM  S G++AS+V+N    +++  I    GEE      A A+V  R+     T +DL   
Sbjct: 127 RMDTSRGMTASEVLNSLREEEIGEIFRNYGEEPLWRSAAAAVVHFRKKKKILTVKDLKDA 186

Query: 195 IQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
                  +    +IHP T  FQALRI+VN E  +L   L SA + L+ GG L V+SF SL
Sbjct: 187 TSGVFPSYRLRKKIHPLTLIFQALRIYVNQEGAQLKVLLDSAFRWLRPGGRLAVISFCSL 246

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           +DR VK  F     + +               + +TKKV++P+ E+   N RSRSAKLR 
Sbjct: 247 DDRPVKWAFREAEARGLG--------------KILTKKVIMPSYEETRMNPRSRSAKLRC 292

Query: 314 GMRTVERSIED 324
                E+S ED
Sbjct: 293 ----FEKSFED 299


>gi|93007204|ref|YP_581641.1| methyltransferase [Psychrobacter cryohalolentis K5]
 gi|92394882|gb|ABE76157.1| methyltransferase [Psychrobacter cryohalolentis K5]
          Length = 383

 Score =  165 bits (417), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 107/287 (37%), Positives = 160/287 (55%), Gaps = 15/287 (5%)

Query: 39  VILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95
           + +DATFG GG+SR         + +I  D+DP A+S  +E + +   +  +   +F+ L
Sbjct: 94  IYVDATFGRGGHSRLLLSQLADDATLIVFDKDPTAISVARE-LANSDSRVKVVHDSFATL 152

Query: 96  QDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQA 151
            D +       VDG++ DLG+SS QID G RGFSF + G +DMRM  S G S ++ +   
Sbjct: 153 TDSLAAMRITQVDGLMADLGISSPQIDDGSRGFSFMRDGAVDMRMDTSRGQSVAEWLETV 212

Query: 152 NVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPAT 211
           + + L  +L   GEE+ + RIA AI   +Q   + +T  L+ +I K  + +     HPAT
Sbjct: 213 DDETLANVLYEFGEERHSRRIARAI---KQMDSYDSTLALAEVI-KVAHPNWQRGKHPAT 268

Query: 212 RSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRS-GKVM 270
           +SFQA+RIF+NNE+ ++   L  +   LK GG L V+SFHSLEDR +K+F    S G+  
Sbjct: 269 QSFQAMRIFINNELGDVDNFLEQSIPILKVGGQLAVISFHSLEDRRIKQFLQRHSKGQYP 328

Query: 271 AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
              ++      P  F     K V P++ +++ N RSRSA LR   RT
Sbjct: 329 EDENLPMPPKRPRYFSK--PKRVGPSKAEISHNPRSRSAWLRMATRT 373


>gi|237752673|ref|ZP_04583153.1| S-adenosyl-methyltransferase MraW [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229376162|gb|EEO26253.1| S-adenosyl-methyltransferase MraW [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 311

 Score =  165 bits (417), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 108/306 (35%), Positives = 174/306 (56%), Gaps = 17/306 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H+PVLLE+V+         +++D T G GG++ +  +   N  +I +D+D  A++   + 
Sbjct: 5   HIPVLLEQVLDSFKTLKSGILIDCTLGFGGHTHALLEAYPNLEIIGIDQDSDALAFTAKR 64

Query: 78  MRDYKEQFSLFQATFSQ-----LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           +  + E+FS  +  +S      L +    + + G++ D+GVSSMQ D  +RGF F  S  
Sbjct: 65  LSVFGERFSYKKGRYSAVVRELLSNKALQENIVGILADIGVSSMQFDNKERGFCFD-SYM 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM     +SA ++VN A++ +L RI    GE ++  ++A  IV+ R++A F + + L
Sbjct: 124 LDMRMDREQHLSAKEIVNGASLNELERIFRDFGEIREYKKLARLIVEERKNAKFTSAKHL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRS-AEKALKAGGLLIVVSF 250
           S LI K     K+ +IHPAT++FQALRI VN+E+ EL + L++  E  LK G  + V++F
Sbjct: 184 SELIAKHF---KHPKIHPATQAFQALRIAVNDELGELERLLQTLGENPLKKGARVSVITF 240

Query: 251 HSLEDRLVKKFFASRSGKVMA---VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           HSLEDR+ K+ F       +    +   I    H    +S+ KK +   + ++  N RSR
Sbjct: 241 HSLEDRITKQTFREWERDCICDCNIMRCICGGGHSKG-KSLYKKPLCADESELRENPRSR 299

Query: 308 SAKLRA 313
           SAKLR+
Sbjct: 300 SAKLRS 305


>gi|223888788|ref|ZP_03623379.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi 64b]
 gi|223885604|gb|EEF56703.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi 64b]
          Length = 296

 Score =  165 bits (417), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 99/302 (32%), Positives = 171/302 (56%), Gaps = 24/302 (7%)

Query: 20  HVPVLLEKVIALLNPAPGK---VILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           H PVLL+ +  L+   P K   + +D+T G G ++++  +     +++ ++RDP  +   
Sbjct: 7   HFPVLLDAICKLIEDLPVKSDLIYIDSTLGEGVHAKAILEKYDFLSLVGIERDPQILERA 66

Query: 75  QETMRDYKEQFSLFQATFSQL-QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           ++ +  ++E+ + F   F     +Y  +   + ++ DLG+S        +GFSF +  PL
Sbjct: 67  RQFLSIFEERITYFNDWFDNFFVNYPLNVKANFILVDLGISMFHYKGSKKGFSFLEDEPL 126

Query: 134 DMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           DMR+  S   ISA+++VN  +  DL  ++  L  E  + +I+ AIV+ R+    +TT++L
Sbjct: 127 DMRLCSSSCKISAAEIVNTYSKYDLEALIYDLSNEHYSRKISKAIVEYRKIKKIETTKEL 186

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            S+I K   FSK  +I+PAT++FQALRI+VN+E+  L + L    + L   G+L +++FH
Sbjct: 187 QSIISKVYPFSKV-KINPATKTFQALRIYVNDELARLKRSLPFWVENLAKDGILAIITFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           S+EDR+VK FF S S  + A                I+KK ++P+ +++  N+ SRSAKL
Sbjct: 246 SIEDRIVKDFFRSLSCDLYA---------------KISKKPIMPSFDEIKKNKPSRSAKL 290

Query: 312 RA 313
           R 
Sbjct: 291 RV 292


>gi|166154483|ref|YP_001654601.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis 434/Bu]
 gi|166155358|ref|YP_001653613.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301335743|ref|ZP_07223987.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis L2tet1]
 gi|263446017|sp|B0B7I8|RSMH_CHLT2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446024|sp|B0BBQ3|RSMH_CHLTB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|165930471|emb|CAP03964.1| S-adenosyl-L-methionine-dependent methyltransferase [Chlamydia
           trachomatis 434/Bu]
 gi|165931346|emb|CAP06918.1| S-adenosyl-L-methionine-dependent methyltransferase [Chlamydia
           trachomatis L2b/UCH-1/proctitis]
          Length = 300

 Score =  165 bits (417), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 112/311 (36%), Positives = 165/311 (53%), Gaps = 24/311 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALD---RDPFAVSCGQE 76
           H+PVL+++ ++L       V  D T GAGG++ +F     ++   D   RD  A++  + 
Sbjct: 7   HIPVLVKESLSLFRGRNPVVFCDVTVGAGGHAEAFLTEFPSIERYDGSDRDLSALALSEN 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ-KSGPLDM 135
            +  +K++  L  A+F ++     D   DGV+ DLGVSSMQ++  +RGFSFQ +  PLDM
Sbjct: 67  RLLPFKDRVRLRHASFEEVDTLTSDGTYDGVLADLGVSSMQLNNLERGFSFQGEDHPLDM 126

Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM  S G++AS+V+N    +++  I    GEE      A A+V  R+     T +DL   
Sbjct: 127 RMDTSRGMTASEVLNSLREEEIGEIFRNYGEEPLWRSAAAAVVHFRKKKKILTVKDLKDA 186

Query: 195 IQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
                  +    +IHP T  FQALRI+VN E  +L   L SA + L+ GG L V+SF SL
Sbjct: 187 TSGVFPSYRLRKKIHPLTLIFQALRIYVNQEGAQLKVLLDSAFRWLRPGGRLAVISFCSL 246

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           +DR VK  F     + +               + +TKKV++P+ E+   N RSRSAKLR 
Sbjct: 247 DDRPVKWAFREAEARGLG--------------KILTKKVIMPSYEETRMNPRSRSAKLRC 292

Query: 314 GMRTVERSIED 324
                E+S ED
Sbjct: 293 ----FEKSFED 299


>gi|330686332|gb|EGG97937.1| S-adenosyl-methyltransferase MraW [Staphylococcus epidermidis
           VCU121]
          Length = 311

 Score =  164 bits (416), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 101/303 (33%), Positives = 163/303 (53%), Gaps = 11/303 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+ V+L + I  LN     V +D T G  G++       S+   +IA+D+D  A+   ++
Sbjct: 4   HISVMLNETIDYLNIKEDGVYVDCTLGGAGHALYLLNQLSDEGRLIAIDQDLTAIENAKD 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++++  + +   + F +L   + +   + VDG+ +DLGVSS Q+D  +RGFS+     L
Sbjct: 64  VLKEHLHKVTFIHSNFRELTQILNELNIEKVDGIYYDLGVSSPQLDVPERGFSYHHDAKL 123

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     +SA +VVN+   + L +I    GEEK + +IA  I   R+  P +TT +L 
Sbjct: 124 DMRMDQTQSLSAYEVVNEWPYEALVKIFYRYGEEKFSKQIARRIEANREKQPIETTLELV 183

Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I++ +   ++    HPA R FQA+RI VN+E+      +  A   +K  G + V++FH
Sbjct: 184 EVIKEGIPAKARRKGGHPAKRVFQAIRIAVNDELSAFEDSIEQAIGLVKVNGRISVITFH 243

Query: 252 SLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDRL K+ F          R +  IP    P + + + +K +  T ED+  N R+RSA
Sbjct: 244 SLEDRLCKQMFQEYEKGPDVPRGLPVIPEAYTPKL-KRVNRKPITATDEDLDDNNRARSA 302

Query: 310 KLR 312
           KLR
Sbjct: 303 KLR 305


>gi|294646197|ref|ZP_06723851.1| S-adenosyl-methyltransferase MraW [Bacteroides ovatus SD CC 2a]
 gi|292638415|gb|EFF56779.1| S-adenosyl-methyltransferase MraW [Bacteroides ovatus SD CC 2a]
          Length = 309

 Score =  164 bits (416), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 107/300 (35%), Positives = 162/300 (54%), Gaps = 16/300 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HVPVLL++ +  +N  P    +D TFG  G+SR        G  ++  D+D       + 
Sbjct: 14  HVPVLLKESVDGMNIQPDGTYVDVTFGGAGHSREILSRLGEGGRLLGFDQDE---DAERN 70

Query: 77  TMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + D    F   ++ F  LQ+   Y   + VD ++ DLGVSS   D  +RGFSF+  G L
Sbjct: 71  IVND--PHFIFVRSNFRYLQNFLRYHDIEQVDAILADLGVSSHHFDDSERGFSFRFDGAL 128

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  +GI+A+D+VN    + L  +L + GE K + ++A  IVK R     +T  +  
Sbjct: 129 DMRMNKRAGITAADIVNTYEEERLANLLYLYGELKNSRKLASVIVKARSGQYIRTIGEFL 188

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I+    F +        + FQALRI VN E+E L + L +A +ALK GG L+V+++HS
Sbjct: 189 EIIKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLLAATEALKPGGRLVVITYHS 246

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK    + + +  A      +   P  F+ +  KV+VP + ++  N RSRSAKLR
Sbjct: 247 LEDRMVKNIMKTGNVEGKAESDFFGNLQTP--FRLVNNKVIVPDEAEIERNPRSRSAKLR 304


>gi|311103994|ref|YP_003976847.1| methyltransferase [Achromobacter xylosoxidans A8]
 gi|310758683|gb|ADP14132.1| S-adenosyl-methyltransferase MraW [Achromobacter xylosoxidans A8]
          Length = 364

 Score =  164 bits (416), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 120/330 (36%), Positives = 180/330 (54%), Gaps = 35/330 (10%)

Query: 19  DHVPVLLEKVI-ALLNP---------------------APGKVILDATFGAGGYSRSFC- 55
           +H PVLLE  + ALL P                     A   V +D TFG GG+SR    
Sbjct: 4   EHRPVLLEPTVDALLLPDFGGKGATRSHQQAGPATATRAEDGVFVDGTFGRGGHSRELLG 63

Query: 56  KMG--SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFD 110
           ++G  + ++  D+DP         +     + ++    F+ + + +   G   VDGV+ D
Sbjct: 64  RLGKAARLVVFDKDP-EAIAVANALAAADPRVTVVHGGFATMAEELEQLGIGKVDGVMLD 122

Query: 111 LGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQA 169
           LGVSS QID  +RGFSF + GPLDMRM  + G + +D + QA+V ++  ++   GEE+ A
Sbjct: 123 LGVSSPQIDDAERGFSFMRDGPLDMRMDTTRGPTVADWLAQASVDEMREVIADYGEERFA 182

Query: 170 SRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELA 229
            ++A AI  RR + P +TT +L+  +   V   +  + HPATR+FQALRI++N E+EELA
Sbjct: 183 FQVAKAIAARRATRPLRTTLELAECVASAVRTREKGQ-HPATRTFQALRIYINRELEELA 241

Query: 230 QGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQS 287
           + L +A   L  GG L V+SFHSLEDR+VK+  A+ +    A   +    S     V +S
Sbjct: 242 RTLAAALDLLAPGGRLAVISFHSLEDRMVKQCIAAAARPAAAHARLPLRESEMPQPVLRS 301

Query: 288 ITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           + +  V+   ++V+ N R+RSA LR   RT
Sbjct: 302 LGR--VLAEDDEVSANARARSAVLRVAERT 329


>gi|225551942|ref|ZP_03772882.1| S-adenosyl-methyltransferase MraW [Borrelia sp. SV1]
 gi|225370940|gb|EEH00370.1| S-adenosyl-methyltransferase MraW [Borrelia sp. SV1]
          Length = 296

 Score =  164 bits (416), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 99/302 (32%), Positives = 169/302 (55%), Gaps = 24/302 (7%)

Query: 20  HVPVLLEKVIALLNPAPGK---VILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           H PVLL+ +  L+   P K   + +D+T G G ++++  +     +++ ++RDP  +   
Sbjct: 7   HFPVLLDAICKLIEDLPVKSDLIYIDSTLGEGVHAKAILEKYDFLSLVGIERDPQILERA 66

Query: 75  QETMRDYKEQFSLFQATFSQL-QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           +  +  ++E+ + F   F     +Y  +   + ++ DLG+S        +GFSF +  PL
Sbjct: 67  KHFLSIFEERITYFNDWFDNFFVNYPLNVKANFILVDLGISMFHYKGSKKGFSFLEDEPL 126

Query: 134 DMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           DMR+  S   ISAS++VN  +  DL  ++  L  E  + RI+ AI++ R+    +TT++L
Sbjct: 127 DMRLCSSSCKISASEIVNTFSKYDLEALIYDLSNEHYSRRISKAIIEYRKIKKIETTKEL 186

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            S+I K   FSK  +I+PAT++FQALRI+VN+E+  L + L    + L   G+L +++FH
Sbjct: 187 QSIISKVYPFSKV-KINPATKTFQALRIYVNDELARLKRSLPFWVENLAKDGILAIITFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           S+EDR+VK FF   S  + A                I+KK ++P+ +++  N+ SRSAKL
Sbjct: 246 SIEDRIVKDFFGGLSCDLYA---------------KISKKPIMPSFDEIKKNKPSRSAKL 290

Query: 312 RA 313
           R 
Sbjct: 291 RV 292


>gi|238809925|dbj|BAH69715.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 320

 Score =  164 bits (416), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 110/314 (35%), Positives = 168/314 (53%), Gaps = 18/314 (5%)

Query: 7   KTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIAL 64
           K +   ++     H  VLL++ I  LN  P  + +D T G GG+S    K      +IA 
Sbjct: 11  KFLKEVVNKMENQHFSVLLQESIDALNIKPDGIYVDLTLGMGGHSSEILKRLDTGRLIAF 70

Query: 65  DRDPFAVSCGQETMRDYKE-QFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDC 120
           D+D FA+   ++ +   K   F L  + F  ++   D +    VDG++ DLG+SS Q+D 
Sbjct: 71  DKDTFAIEESRKRLSQIKSTNFQLIHSDFKNIKSELDKLNISQVDGIIADLGISSPQVDN 130

Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS+ K+  LDMRM  S  + A  VVN  +   L ++L    E K A ++A AI+ +
Sbjct: 131 DERGFSYNKNARLDMRMDQSQKLDAYYVVNNYSESQLEQLLRNYAEVKLARQVAKAIISK 190

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R   P  TT +L+ ++ +  Y +K  ++ +P    FQA+RI VNNE + L Q L+ A + 
Sbjct: 191 R---PITTTLELAQVV-RDAYPAKLVKLKNPNKAVFQAIRIEVNNEFDSLKQMLQDAIEL 246

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           LK    L V++FHSLED +VK FF S       ++  +P+       +    KV +PT  
Sbjct: 247 LKPNTSLAVITFHSLEDSIVKHFFGS------LIKSKLPAKMPINEEKQYKVKVFLPTNN 300

Query: 299 DVAFNRRSRSAKLR 312
           ++  N+RSRSAKLR
Sbjct: 301 ELELNKRSRSAKLR 314


>gi|148240649|ref|YP_001226036.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. WH 7803]
 gi|262825757|sp|A5GP74|RSMH_SYNPW RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|147849188|emb|CAK24739.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. WH 7803]
          Length = 305

 Score =  164 bits (416), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 112/311 (36%), Positives = 160/311 (51%), Gaps = 31/311 (9%)

Query: 20  HVPVLLEKVIALLNPAPG-----KVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVS 72
           HVPVL + ++  L+  P       +++DAT G GG+S        ++  I LD+DP A +
Sbjct: 14  HVPVLADVLLNALDEEPSVHWQSGLVVDATLGGGGHSSLLLDRYPDLRLIGLDQDPTARA 73

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                +  +KE+ S+    F+   DY P +    V+ DLGVSS Q+D   RGFSF+  GP
Sbjct: 74  AAATRLSPWKERVSIVATNFA---DYSPPQSASLVLADLGVSSPQLDVAARGFSFRLDGP 130

Query: 133 LDMRMS--CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI-VKRRQSAPFQTTQ 189
           LDMRM+    G +A +++ +    DL  ++   GEE+ + RIA  I        P+  T 
Sbjct: 131 LDMRMNPESDGETAGELIERMEESDLADLIYAYGEERLSRRIARRIKADLAAQGPYAGTA 190

Query: 190 DLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             +  +       ++  RIHPATR+FQALRI VN+E+  L Q L SA   L+ GGLL ++
Sbjct: 191 SFAYAVAGCYPPKARRGRIHPATRTFQALRIAVNDELGVLDQLLSSAPGWLQPGGLLAII 250

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDR VK  F                         IT++ +V + E+   N RSRS
Sbjct: 251 SFHSLEDRRVKTAFLQDE-----------------RLDRITRRPLVASAEEQERNPRSRS 293

Query: 309 AKLRAGMRTVE 319
           AKLR   +  E
Sbjct: 294 AKLRIARKRSE 304


>gi|293366856|ref|ZP_06613532.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Staphylococcus epidermidis M23864:W2(grey)]
 gi|291319157|gb|EFE59527.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Staphylococcus epidermidis M23864:W2(grey)]
          Length = 304

 Score =  164 bits (416), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 101/301 (33%), Positives = 164/301 (54%), Gaps = 11/301 (3%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETMRD 80
           +L + I  LN     V +D T G  G++       ++   +IA+D+D  A+   +E +++
Sbjct: 1   MLNETIDYLNIKEDGVYVDCTLGGAGHALYLLNQLNDKGRLIAIDQDLTAIENAKEVLKE 60

Query: 81  YKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
           +  + +     F +L + + +   + VDG+ +DLGVSS Q+D  +RGFS+     LDMRM
Sbjct: 61  HLHKVTFVHNNFRELTNILNELEIEKVDGIYYDLGVSSPQLDVPERGFSYHNDAKLDMRM 120

Query: 138 S-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
                +SA +VVNQ + + L RI    GEEK + +IA  I   R+  P +TT +L  +I+
Sbjct: 121 DQTQSLSAYEVVNQWSYEALVRIFFRYGEEKFSKQIARRIEAHREQQPIETTLELVDVIK 180

Query: 197 KTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           + +   ++    HPA R FQA+RI VN+E+      +  A + +K GG + V++FHSLED
Sbjct: 181 EGIPAKARRKGGHPAKRVFQAIRIAVNDELSAFEDSVEQAIECVKVGGRISVITFHSLED 240

Query: 256 RLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           RL K+ F    +   V     +IP  A+    + + +K +  T +D+  N R+RSAKLR 
Sbjct: 241 RLCKQIFQEFEKGPDVPRGLPVIPE-AYTPKLKRVNRKPITATDDDLNDNNRARSAKLRV 299

Query: 314 G 314
            
Sbjct: 300 A 300


>gi|237747024|ref|ZP_04577504.1| S-adenosyl-methyltransferase MraW [Oxalobacter formigenes HOxBLS]
 gi|229378375|gb|EEO28466.1| S-adenosyl-methyltransferase MraW [Oxalobacter formigenes HOxBLS]
          Length = 321

 Score =  164 bits (416), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 120/311 (38%), Positives = 178/311 (57%), Gaps = 20/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGK----VILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVS 72
           H  VLL + +  L+ + GK    V LD TFG GG+SR    ++G    ++A D+DP AV 
Sbjct: 8   HDSVLLNEAVDALDIS-GKRADGVYLDGTFGRGGHSRLILERLGEKGRLVAFDKDPEAVR 66

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
             +E       +F +   TF+ L++ + +   K +DG++ DLGVSS Q++   RGFSF+ 
Sbjct: 67  VAKEI---GDPRFEIVHGTFAALEEVLEERKIKAIDGILLDLGVSSPQVEDAKRGFSFRL 123

Query: 130 SGPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM S  G+SA + +     K +  ++   GEE+ A +IA  IV  R   P  +T
Sbjct: 124 DGPLDMRMDSTRGMSAREWLAVETEKKIAEVIYQYGEERFAFQIAKEIVAGRAIQPIDST 183

Query: 189 QDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           + L+ ++ + V  F K    +PATR+FQA+RI+VN E+EEL  GL  A + L   G + V
Sbjct: 184 KQLAQIVARAVKTFEKGK--NPATRTFQAIRIYVNRELEELEIGLEKAWQRLGLEGRMSV 241

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           +SFHSLEDR+VK+FFA ++   M  R + I ++  P     +  K + P+  +V  N R+
Sbjct: 242 ISFHSLEDRIVKRFFAGKATVKMPDRRLPIRASELPRPEMKLLGK-IKPSAAEVKRNVRA 300

Query: 307 RSAKLRAGMRT 317
           RSA LR   R 
Sbjct: 301 RSAILRVATRV 311


>gi|225549158|ref|ZP_03770133.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi 94a]
 gi|225370384|gb|EEG99822.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi 94a]
          Length = 296

 Score =  164 bits (416), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 100/302 (33%), Positives = 170/302 (56%), Gaps = 24/302 (7%)

Query: 20  HVPVLLEKVIALLNPAPGK---VILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           H PVLL+ +  L+   P K   + +D+T G G ++++  +     +++ ++RDP  +   
Sbjct: 7   HFPVLLDAICKLIEDLPVKSDLIYIDSTLGEGVHAKAILEKYDFLSLVGIERDPQILERA 66

Query: 75  QETMRDYKEQFSLFQATFSQL-QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           ++ +  ++E+ + F   F     +Y  +   + ++ DLG+S        +GFSF +  PL
Sbjct: 67  RQFLSIFEERITYFNDWFDNFFVNYPLNVKANFILVDLGISMFHYKGSKKGFSFLEDEPL 126

Query: 134 DMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           DMR+  S   ISA+++VN  +  DL  ++  L  E  + RI+ AIV+ R+    +TT++L
Sbjct: 127 DMRLCSSSCKISAAEIVNTYSKYDLEALIYDLSNEHYSRRISKAIVEYRKIKKIETTKEL 186

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            S+I K   FSK  +I+PAT++FQALRI+VN+E+  L + L    + L   G+L +++FH
Sbjct: 187 QSIISKVYPFSKV-KINPATKTFQALRIYVNDELTRLKRSLPFWVENLAKDGILAIITFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           S+EDR+VK FF S S  + A                I+KK ++P+  ++  N+ SRSAKL
Sbjct: 246 SIEDRIVKDFFRSLSCDLYA---------------KISKKPIMPSFGEIKKNKPSRSAKL 290

Query: 312 RA 313
           R 
Sbjct: 291 RV 292


>gi|218258181|ref|ZP_03474583.1| hypothetical protein PRABACTJOHN_00237 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225704|gb|EEC98354.1| hypothetical protein PRABACTJOHN_00237 [Parabacteroides johnsonii
           DSM 18315]
          Length = 310

 Score =  164 bits (416), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 108/301 (35%), Positives = 163/301 (54%), Gaps = 17/301 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           HVPV+L + +  L   P  V +D TFG GG+SR       N   +   D+D  A     E
Sbjct: 9   HVPVMLHESLEGLGIQPSGVYVDVTFGGGGHSREILNRLDNEGTLYGFDQDADA-----E 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  +F   ++ F  L +++   GV    DG++ DLGVSS   D  DRGFSF+  G 
Sbjct: 64  KNIPADSRFVFVRSNFRYLYNFMRYHGVAGEVDGLLADLGVSSHHFDDKDRGFSFRFDGA 123

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+  +G +A+D+VN    + L  +  + GE K A ++A  +V+ R+    +T  D 
Sbjct: 124 LDMRMNTRAGQTAADIVNTYTEEQLADLFYLYGELKVARKLASVLVRSREIKKIETIADF 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             +I+   +  K+       + FQALRI VN+E+  L + L+   + LK GG L+V+++H
Sbjct: 184 LEVIKP--FTGKDKEKKFLAQVFQALRIEVNDEMRALREMLQQTLQVLKPGGRLVVITYH 241

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDRLVK F  + + +  A +    +   P  F+ +  KV+VP+ E++  N RSRSAKL
Sbjct: 242 SLEDRLVKNFLKTGNFEGKAEQDFFGNIKSP--FRLVNNKVIVPSGEEIERNPRSRSAKL 299

Query: 312 R 312
           R
Sbjct: 300 R 300


>gi|237716641|ref|ZP_04547122.1| S-adenosyl-methyltransferase mraW [Bacteroides sp. D1]
 gi|262405416|ref|ZP_06081966.1| MraW methylase [Bacteroides sp. 2_1_22]
 gi|294809136|ref|ZP_06767854.1| S-adenosyl-methyltransferase MraW [Bacteroides xylanisolvens SD CC
           1b]
 gi|229442624|gb|EEO48415.1| S-adenosyl-methyltransferase mraW [Bacteroides sp. D1]
 gi|262356291|gb|EEZ05381.1| MraW methylase [Bacteroides sp. 2_1_22]
 gi|294443690|gb|EFG12439.1| S-adenosyl-methyltransferase MraW [Bacteroides xylanisolvens SD CC
           1b]
          Length = 304

 Score =  164 bits (416), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 107/300 (35%), Positives = 162/300 (54%), Gaps = 16/300 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HVPVLL++ +  +N  P    +D TFG  G+SR        G  ++  D+D       + 
Sbjct: 9   HVPVLLKESVDGMNIQPDGTYVDVTFGGAGHSREILSRLGEGGRLLGFDQDE---DAERN 65

Query: 77  TMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + D    F   ++ F  LQ+   Y   + VD ++ DLGVSS   D  +RGFSF+  G L
Sbjct: 66  IVND--PHFIFVRSNFRYLQNFLRYHDIEQVDAILADLGVSSHHFDDSERGFSFRFDGAL 123

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  +GI+A+D+VN    + L  +L + GE K + ++A  IVK R     +T  +  
Sbjct: 124 DMRMNKRAGITAADIVNTYEEERLANLLYLYGELKNSRKLASVIVKARSGQYIRTIGEFL 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I+    F +        + FQALRI VN E+E L + L +A +ALK GG L+V+++HS
Sbjct: 184 EIIKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLLAATEALKPGGRLVVITYHS 241

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK    + + +  A      +   P  F+ +  KV+VP + ++  N RSRSAKLR
Sbjct: 242 LEDRMVKNIMKTGNVEGKAESDFFGNLQTP--FRLVNNKVIVPDEAEIERNPRSRSAKLR 299


>gi|258645236|ref|ZP_05732705.1| S-adenosyl-methyltransferase MraW [Dialister invisus DSM 15470]
 gi|260402586|gb|EEW96133.1| S-adenosyl-methyltransferase MraW [Dialister invisus DSM 15470]
          Length = 310

 Score =  164 bits (415), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 106/302 (35%), Positives = 165/302 (54%), Gaps = 10/302 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H  VL  ++++ +        +D T G GG+S +  +  SN   +I +D+D  A+   +E
Sbjct: 5   HTTVLQNEMVSHVLTNTNGTYVDCTLGGGGHSLALAEGLSNLGCIIGVDQDGEAIEAAKE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +R  + +F   +  FS +   + + G   VDG +FDLGVSS Q+D G RGFS+  +G L
Sbjct: 65  RLRGAQCKFISVRDNFSNINGILKENGIEKVDGFIFDLGVSSHQLDDGARGFSYMNNGKL 124

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM   + ++A DV+N    + L  I+   GEE+ ASRI   I + R   P  TT++L 
Sbjct: 125 DMRMDQRNSLTAYDVINTYTKEHLRNIIRDYGEERWASRIVDFIDRARMRRPISTTEELV 184

Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  +   ++ +  HPA R+FQA+RI VNNE+  L + +      L  GG L V++FH
Sbjct: 185 HVIKAAIPSAARRDGPHPAKRTFQAIRIEVNNELGILRKAMEDCINHLNKGGRLGVITFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR++K  F   S   +    + I    H    +S+  K + P+ ++V  N R+RSA 
Sbjct: 245 SLEDRIIKNTFRDMSKDCICPSEIPICICNHRRQVRSVG-KAIRPSPQEVKENPRARSAV 303

Query: 311 LR 312
           LR
Sbjct: 304 LR 305


>gi|225375622|ref|ZP_03752843.1| hypothetical protein ROSEINA2194_01247 [Roseburia inulinivorans DSM
           16841]
 gi|225212601|gb|EEG94955.1| hypothetical protein ROSEINA2194_01247 [Roseburia inulinivorans DSM
           16841]
          Length = 312

 Score =  164 bits (415), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 105/310 (33%), Positives = 175/310 (56%), Gaps = 20/310 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
           +H  VLL + I  LN  P  + +D T G GG++       S    +I +D+D  A++   
Sbjct: 4   NHYSVLLNETIENLNIKPDGIYVDGTLGGGGHAYQVASRLSEKGRLIGIDQDADAIAAAG 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQ-KSG 131
           E ++++ ++ ++ ++ ++ +++ +   GV   DG+V DLGVSS Q+D  +RGF+++ ++ 
Sbjct: 64  ERLKEFGDKITIIRSNYANMKEELHRIGVEKVDGIVLDLGVSSFQLDTLERGFTYRDENA 123

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM     ++A D+VN  +  DL RI+   GE+K A  IA  IV+ R   P +TT +
Sbjct: 124 PLDMRMDDRQSLTAKDIVNGYSEMDLYRIIRDYGEDKFAKNIAKHIVQERAKKPIETTGE 183

Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I+ ++    +    HPA R+FQA+RI +N E+E L   L      L  GG + +++
Sbjct: 184 LTEIIRASIPMKVQVTGGHPAKRTFQAIRIELNKELEVLQNNLDDMIDLLNPGGRICIIT 243

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF------QSITKKVVVPTQEDVAFN 303
           FHSLEDR+VK  F              PS+    V       + +T+K ++P++E++  N
Sbjct: 244 FHSLEDRIVKTNFKRNENPCTC-----PSDFPVCVCGKKSKGKVVTRKPILPSEEELEVN 298

Query: 304 RRSRSAKLRA 313
            RS+SAKLR 
Sbjct: 299 SRSKSAKLRV 308


>gi|229827494|ref|ZP_04453563.1| hypothetical protein GCWU000182_02883 [Abiotrophia defectiva ATCC
           49176]
 gi|229788432|gb|EEP24546.1| hypothetical protein GCWU000182_02883 [Abiotrophia defectiva ATCC
           49176]
          Length = 322

 Score =  164 bits (415), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 101/316 (31%), Positives = 171/316 (54%), Gaps = 19/316 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H+P++LE+VI  L+  P  + +D T G GG+S    K    G  +I +D+D  A+     
Sbjct: 11  HIPIMLEEVIEGLDIKPNGIYVDGTLGGGGHSYEIAKRLVSGGRLIGIDQDEAAIKAAGA 70

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + ++ ++  + ++ ++Q+   +   G   VDG++ DLGVSS Q+D  +RGFS+ +   L
Sbjct: 71  RLSEFGDRVIIVRSNYAQMVSVLQSLGIEQVDGILLDLGVSSHQLDNAERGFSYMEDALL 130

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM      +A D+VN  +  +LTRI+   GE++ A++I   I+  R++ P +TT +L+
Sbjct: 131 DMRMDRRQEKTARDIVNYYSQAELTRIIRDYGEDRFAAKIVAKIIDFRENKPVETTGELA 190

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  +    +    HPA R+FQA+RI +N E+  L + +      L  GG + V++FH
Sbjct: 191 EIIKSAIPVKYRLTGGHPAKRTFQAIRIELNRELGVLEESIEGMLDILSDGGRMAVIAFH 250

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK------KVVVPTQEDVAFNRR 305
           SLEDR+VK  F              P +    V    +K      K ++P+ E+   N R
Sbjct: 251 SLEDRIVKSAFKKAESPCTC-----PPDFPICVCGKKSKGFVASRKPLIPSDEETERNPR 305

Query: 306 SRSAKLRAGMRTVERS 321
           ++S+KLR  +R  E +
Sbjct: 306 AKSSKLRIFVRKREEN 321


>gi|148377639|ref|YP_001256515.1| S-adenosyl-methyltransferase [Mycoplasma agalactiae PG2]
 gi|263456537|sp|A5IYG2|RSMH_MYCAP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|148291685|emb|CAL59071.1| S adenosyl methyltransferase [Mycoplasma agalactiae PG2]
          Length = 300

 Score =  164 bits (415), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 107/306 (34%), Positives = 163/306 (53%), Gaps = 17/306 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H+P+LL + I  LN     + LD T G GG+S    K   N  ++  D+D FA+   ++ 
Sbjct: 5   HIPILLNEAIKSLNIKSDGIYLDLTVGMGGHSSEILKRLKNGLLVGFDKDLFAIEESRKR 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +      F L  + F+ + D +       VDG++ DLG+SS Q+D  +RGFS+ K   LD
Sbjct: 65  LSKIGSNFQLIHSDFNNVADELAKLNINAVDGILVDLGISSPQVDNAERGFSYSKDARLD 124

Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM+ +  + A  VVN  +  +L  I     E K A ++A+AI+K R   P  TT +L+ 
Sbjct: 125 MRMNTNQALDAHFVVNTYSEDELITIFYNYAEVKLAKQVANAIIKNR---PINTTLELAE 181

Query: 194 LIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +I K+ Y +K   + +P    FQA+RI VNNE   +   L  A   LK    L +++FHS
Sbjct: 182 VI-KSAYPAKLLSLKNPCKAVFQAIRIEVNNEFSSINSMLVQALNLLKKDSSLAIITFHS 240

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LED ++KKFF    G ++  +H  PS       +    KV  P++ +++ N RSRSAKLR
Sbjct: 241 LEDSIIKKFF----GNLIKSKH--PSKMPIKEEKKYIVKVYSPSKAEISENNRSRSAKLR 294

Query: 313 AGMRTV 318
              + +
Sbjct: 295 VLTKLI 300


>gi|262831581|sp|Q1Q846|RSMH_PSYCK RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 342

 Score =  164 bits (415), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 107/287 (37%), Positives = 160/287 (55%), Gaps = 15/287 (5%)

Query: 39  VILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95
           + +DATFG GG+SR         + +I  D+DP A+S  +E + +   +  +   +F+ L
Sbjct: 53  IYVDATFGRGGHSRLLLSQLADDATLIVFDKDPTAISVARE-LANSDSRVKVVHDSFATL 111

Query: 96  QDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQA 151
            D +       VDG++ DLG+SS QID G RGFSF + G +DMRM  S G S ++ +   
Sbjct: 112 TDSLAAMRITQVDGLMADLGISSPQIDDGSRGFSFMRDGAVDMRMDTSRGQSVAEWLETV 171

Query: 152 NVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPAT 211
           + + L  +L   GEE+ + RIA AI   +Q   + +T  L+ +I K  + +     HPAT
Sbjct: 172 DDETLANVLYEFGEERHSRRIARAI---KQMDSYDSTLALAEVI-KVAHPNWQRGKHPAT 227

Query: 212 RSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRS-GKVM 270
           +SFQA+RIF+NNE+ ++   L  +   LK GG L V+SFHSLEDR +K+F    S G+  
Sbjct: 228 QSFQAMRIFINNELGDVDNFLEQSIPILKVGGQLAVISFHSLEDRRIKQFLQRHSKGQYP 287

Query: 271 AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
              ++      P  F     K V P++ +++ N RSRSA LR   RT
Sbjct: 288 EDENLPMPPKRPRYFSK--PKRVGPSKAEISHNPRSRSAWLRMATRT 332


>gi|307710487|ref|ZP_07646924.1| S-adenosyl-methyltransferase MraW [Streptococcus mitis SK564]
 gi|307618750|gb|EFN97889.1| S-adenosyl-methyltransferase MraW [Streptococcus mitis SK564]
          Length = 299

 Score =  164 bits (415), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 105/298 (35%), Positives = 168/298 (56%), Gaps = 14/298 (4%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDYKEQ--F 85
           +L+  P  + +DAT G  G+S       S   ++ A D+D  A+   Q+ +  Y E+   
Sbjct: 1   MLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQKRLAPYIEKGMV 60

Query: 86  SLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SG 141
           +  +  F  LQ  + + GV   DG+ +DLGVSS Q+D  +RGFS++K  PLDMRM+  + 
Sbjct: 61  TFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDAPLDMRMNQDAS 120

Query: 142 ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYF 201
           ++A +VVN  +  DL RI    GE+K + +IA  I + R   P +TT +L+ +I K+   
Sbjct: 121 LTAYEVVNNYDYHDLVRIFFKYGEDKFSKQIARKIEQARDLKPIETTTELAEII-KSAKP 179

Query: 202 SKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259
           +K    + HPA + FQA+RI VN+E+    + ++ A   L   G + V++FHSLEDRL K
Sbjct: 180 AKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVITFHSLEDRLTK 239

Query: 260 KFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           + F   S  +V      IP +  P + + +++K ++P+ E++  N RS SAKLR   +
Sbjct: 240 QLFKEASTVEVPKGLPFIPDDLKPKM-ELVSRKPILPSAEELEANNRSHSAKLRVARK 296


>gi|115444103|ref|NP_001045831.1| Os02g0137600 [Oryza sativa Japonica Group]
 gi|42409129|dbj|BAD10379.1| putative methyltransferase [Oryza sativa Japonica Group]
 gi|42409260|dbj|BAD10523.1| putative methyltransferase [Oryza sativa Japonica Group]
 gi|113535362|dbj|BAF07745.1| Os02g0137600 [Oryza sativa Japonica Group]
 gi|125538002|gb|EAY84397.1| hypothetical protein OsI_05773 [Oryza sativa Indica Group]
          Length = 436

 Score =  164 bits (415), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 119/345 (34%), Positives = 166/345 (48%), Gaps = 47/345 (13%)

Query: 15  HTIGDHVPVLLEKVIALLN-PAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFA 70
           H+  +HVPV+L +V+A    P P +  +D T GA G+S +  +    +   I +D DP A
Sbjct: 87  HSHAEHVPVMLGEVLAAFRRPLPLRSFVDCTLGAAGHSLAMMEAHPEMELYIGMDVDPSA 146

Query: 71  VSCG---------------------QETMRDYK--EQFSLFQATFSQLQDY--VPDKGVD 105
           +  G                     Q T+R Y   + F   +     + +   V   GVD
Sbjct: 147 LEIGRSRIEAFLANRETNGDDEDASQGTLRAYTHAKNFKYIKHVLGSVDENIAVGTSGVD 206

Query: 106 GVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILG 164
           G++ DLG+SSMQ++  DRGFS  + GPLDMRM     + A D++N     ++ RIL   G
Sbjct: 207 GILIDLGMSSMQVNRSDRGFSVLQDGPLDMRMDPKATLKAEDILNSWPDLEVGRILRDYG 266

Query: 165 EEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS--KNNRIHPATRSFQALRIFVN 222
           EE     +   IVK R      +T +L  LIQ+T   S  +   I  ATR FQALRI VN
Sbjct: 267 EESNWQSLQKRIVKARAMGGLHSTGELVKLIQRTCTSSGGRQGWIKTATRVFQALRIAVN 326

Query: 223 NEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF-------ASRSGKVMAVRHM 275
           +E+  L   L +    L   G L V+SFHSLEDR+VK+ F            +   V   
Sbjct: 327 DELRTLEDALHACFDCLATDGRLAVISFHSLEDRIVKQTFLELIHEDEIDDDEDDLVSAD 386

Query: 276 IPSNAHPAVFQSI--------TKKVVVPTQEDVAFNRRSRSAKLR 312
           I S   P   Q +        TK+ + P+QE+   N+R RSAKLR
Sbjct: 387 IDSEDEPWFKQRVQGKNGTILTKRPISPSQEEEELNQRCRSAKLR 431


>gi|255558644|ref|XP_002520347.1| s-adenosyl-methyltransferase mraw, putative [Ricinus communis]
 gi|223540566|gb|EEF42133.1| s-adenosyl-methyltransferase mraw, putative [Ricinus communis]
          Length = 405

 Score =  164 bits (415), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 112/335 (33%), Positives = 171/335 (51%), Gaps = 45/335 (13%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
           +HVPVLL +VI + +    +  +D T GA G+S +  K      N + +D DP A +  +
Sbjct: 70  NHVPVLLGEVIDVFSSLHLRSFVDCTLGAAGHSSAIIKGHPELENYVGMDVDPVAHAKAR 129

Query: 76  ETMRDYKEQFSL------FQATFSQLQDYVPD-------KGVDGVVFDLGVSSMQIDCGD 122
             + D     S       F + F  ++  + +        GVD ++ DLG+SSMQ++  +
Sbjct: 130 ACIDDLMHSHSCHLKVHTFLSNFKHVKPLLAEVDPNFFNSGVDAILMDLGMSSMQVNNPE 189

Query: 123 RGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFS   +GPLDMRM   + + A D++N     ++ R+L   GEE     + + IV+ R 
Sbjct: 190 RGFSVLANGPLDMRMDPQASLKAEDILNSWPDTEVGRVLREYGEESNWHLLQNKIVQARL 249

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNR---IHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
                TT DL  LI+   + ++  R   I  ATR FQALRI VN+E+  L + L +  + 
Sbjct: 250 RGGLHTTGDLVDLIRNMTHGTRGGRQGWIKTATRVFQALRIAVNDELGTLEKTLNACFEC 309

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFA---------------------SRSGKVMAVRHMIP 277
           L  GG L V+SFHSLEDR+VK+ F                      SR+ + M ++ ++ 
Sbjct: 310 LAPGGRLAVISFHSLEDRIVKQTFLKVIETGRGDGDADEEERFGRDSRNSEEMWIKSVVQ 369

Query: 278 SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
                   + +TK+ V P++E+   NRRSRSAKLR
Sbjct: 370 GRNG----RILTKRPVTPSEEEERLNRRSRSAKLR 400


>gi|154494023|ref|ZP_02033343.1| hypothetical protein PARMER_03368 [Parabacteroides merdae ATCC
           43184]
 gi|154086283|gb|EDN85328.1| hypothetical protein PARMER_03368 [Parabacteroides merdae ATCC
           43184]
          Length = 308

 Score =  164 bits (414), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 107/301 (35%), Positives = 165/301 (54%), Gaps = 17/301 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           HVPV+L + +  L+  P  V +D TFG GG+SR      ++   +   D+D  A     E
Sbjct: 9   HVPVMLHESLEGLDIQPSGVYVDVTFGGGGHSREILNRLNDEGELYGFDQDADA-----E 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  +F   ++ F  L +++   GV    DG++ DLGVSS   D  DRGFSF+  G 
Sbjct: 64  KNIPADSRFVFVRSNFRYLYNFMRYHGVAGEVDGLLADLGVSSHHFDDKDRGFSFRFDGA 123

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+  +G +A+D+VN    + L  +  + GE K A ++A  +V+ R+    +T  D 
Sbjct: 124 LDMRMNTRAGQTAADIVNTYTEEQLADLFYLYGELKVARKLASVLVRSREIKKIETIADF 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             +I+   +  K+       + FQALRI VN+E+  L + L+   + LK GG L+V+++H
Sbjct: 184 LEVIKP--FTGKDKEKKFLAQVFQALRIEVNDEMRALREMLQQTLQVLKPGGRLVVITYH 241

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDRLVK F  + + +  A +    +   P  F+ +  KV+VP+ E++  N RSRSAKL
Sbjct: 242 SLEDRLVKNFLKTGNFEGKAEQDFFGNIRSP--FRLVNNKVIVPSDEEIERNPRSRSAKL 299

Query: 312 R 312
           R
Sbjct: 300 R 300


>gi|320102436|ref|YP_004178027.1| S-adenosyl-methyltransferase MraW [Isosphaera pallida ATCC 43644]
 gi|319749718|gb|ADV61478.1| S-adenosyl-methyltransferase MraW [Isosphaera pallida ATCC 43644]
          Length = 309

 Score =  164 bits (414), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 114/305 (37%), Positives = 161/305 (52%), Gaps = 30/305 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQ 75
           HVPVL + V+  L P    ++LD T GAGG++    R     G  VI LDRDP  +    
Sbjct: 27  HVPVLPQAVLEAL-PGGEVILLDGTVGAGGHAALLARRLTGRG-RVIGLDRDPAMLELAA 84

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSM---QIDCGDRGFSFQKSGP 132
                      L  A++++ ++ +  +G+  +   L    +   Q+    RGFSFQ  GP
Sbjct: 85  RATHGLP--VELVHASYTEAREVLAARGLTAIDGLLLDLGLSSDQLAWTHRGFSFQNDGP 142

Query: 133 LDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMR  +  G +A+D+V Q + + L  +    GEE+ + R+A  IV+ R+ AP  TTQ L
Sbjct: 143 LDMRFDTTQGETAADLVAQLDAEQLADLFYRYGEERFSRRVARRIVEERRLAPILTTQRL 202

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           ++++++ +   +   I PATR FQALRI VN E+E L + L    + LK GG   V+SFH
Sbjct: 203 ATIVRRAIP-GRRGPIDPATRVFQALRIAVNRELEHLEEFLGGMAELLKPGGRAAVISFH 261

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR VK  F  R+     V               ITKK +V T E+VA N R+RSAKL
Sbjct: 262 SLEDRKVKHAF--RNDPRWTV---------------ITKKPIVATPEEVAANPRARSAKL 304

Query: 312 RAGMR 316
           R   R
Sbjct: 305 RVAQR 309


>gi|257458293|ref|ZP_05623442.1| S-adenosyl-methyltransferase MraW [Treponema vincentii ATCC 35580]
 gi|257444320|gb|EEV19414.1| S-adenosyl-methyltransferase MraW [Treponema vincentii ATCC 35580]
          Length = 315

 Score =  164 bits (414), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 108/307 (35%), Positives = 159/307 (51%), Gaps = 20/307 (6%)

Query: 20  HVPVLLEKVIALLNP-APGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76
           H PVLL++ + LL P  P  +++D T G GG+S +F        VI +D DP   +  + 
Sbjct: 5   HTPVLLQECLQLLAPETPDPLLIDGTLGEGGHSEAFLNRFPQLKVIGIDADPAIQAKAKV 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVP--DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
            +  +  +   F        D  P  +     ++FDLG+S        RGFSF    PLD
Sbjct: 65  RLAPFGNRVRFFLGWSDDFFDQYPQDNPAPSLILFDLGISLFHYTESKRGFSFGADEPLD 124

Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MR++    ++A+D+VN  + K L  +L +  EE+ +  IA A+V  R+  PF   + LS 
Sbjct: 125 MRINPDESLTAADIVNTYSEKKLADVLYLYAEERFSRPIARAVVAEREKHPFTEARQLSE 184

Query: 194 LIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +   V    ++  IHPAT++FQALRI VN+E++ L + L  A   L  GG + V+SFHS
Sbjct: 185 TVFHAVPARFRHGPIHPATKTFQALRIAVNSELDRLPRLLEKAFACLAEGGKMGVISFHS 244

Query: 253 LEDRLVKKFFASRSGKVMAVRHM-------IPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           LEDR+VK FF   +   +    M       +P  A       +TKK V P+ E+ A N  
Sbjct: 245 LEDRIVKLFFRDLAKSCICPPEMPICTCGGMPRAA------LLTKKPVCPSAEETAANAP 298

Query: 306 SRSAKLR 312
           SRSA+LR
Sbjct: 299 SRSARLR 305


>gi|256832298|ref|YP_003161025.1| S-adenosyl-methyltransferase MraW [Jonesia denitrificans DSM 20603]
 gi|256685829|gb|ACV08722.1| S-adenosyl-methyltransferase MraW [Jonesia denitrificans DSM 20603]
          Length = 334

 Score =  164 bits (414), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 111/304 (36%), Positives = 176/304 (57%), Gaps = 10/304 (3%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSNVIAL--DRDPFAVSCG 74
           H+PVL ++ + L+ PA   P  + +DAT G GG++R+  +   NVIA+  DRD  A++  
Sbjct: 14  HIPVLRDRCLELMAPALNSPQALYVDATLGMGGHTRAVLEAFPNVIAIGIDRDAQALALA 73

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQKSG 131
            E +  + ++F     T+  +   + + G DG   ++ DLGVSS+QID  +RGF++    
Sbjct: 74  SERLESFGQRFRAVHTTYDNIYRVIHEAGFDGAQAILMDLGVSSLQIDERERGFAYAHDA 133

Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  S  ++A+D++N  + K L  IL   GEE+ A RIA AIV+RR+  P++ + +
Sbjct: 134 PLDMRMDSSAPLTAADILNTYDEKRLATILKTYGEERFAPRIARAIVRRREERPWERSGE 193

Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  LI++++   ++    +PA R+FQALRI VN E++ LA  L +A ++L  GG L+V S
Sbjct: 194 LVDLIRESIPAAARATGGNPAKRTFQALRIEVNEELDVLAHALPAAIESLVIGGRLLVES 253

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           +HSLEDR+ K  F             I    H    +++T+      + ++  N RS S 
Sbjct: 254 YHSLEDRMTKVEFTRGLQSSAPPDLPIEPETHRPYLRALTRGAEKADENELQSNPRSASV 313

Query: 310 KLRA 313
           +LRA
Sbjct: 314 RLRA 317


>gi|189347978|ref|YP_001944507.1| S-adenosyl-methyltransferase MraW [Chlorobium limicola DSM 245]
 gi|263445795|sp|B3EIL6|RSMH_CHLL2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|189342125|gb|ACD91528.1| S-adenosyl-methyltransferase MraW [Chlorobium limicola DSM 245]
          Length = 322

 Score =  164 bits (414), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 112/313 (35%), Positives = 168/313 (53%), Gaps = 23/313 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--------MGSNVIALDRDPFAV 71
           H PVL  +V+ LL   PG V +D T G GG+S +  +          S +I +D+D  A+
Sbjct: 7   HEPVLAAEVLQLLVRMPG-VYVDGTLGGGGHSLAILEELERKGFLADSFLIGIDQDDHAL 65

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPD--------KGVDGVVFDLGVSSMQIDCGDR 123
               E +  +    ++ +  FS +   V            V G++ DLGVSS QID  +R
Sbjct: 66  KAASEKLSGFSGSTAIIKGNFSAIAAIVRKISAERHFTDSVAGILLDLGVSSAQIDTPER 125

Query: 124 GFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GFS+ +SGPLDMRM      SA+D+VN  + ++L  +    GEE ++  IA  I+  R+ 
Sbjct: 126 GFSYMRSGPLDMRMDPEAESSAADLVNTLSERELVTLFFRYGEEPRSRSIARGIIDYREK 185

Query: 183 -APFQTTQDLSSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
                 T++L+ +I+  +  ++ +R I   +R FQALR+ VN E+E L Q L      L 
Sbjct: 186 HGSILRTEELAEIIR--LREARPDRVIKTLSRVFQALRVEVNRELEVLEQVLADGASLLS 243

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQED 299
           A G L V+S+HSLEDR+VK FF ++S      R + +      A F  +T+K V   Q++
Sbjct: 244 AQGRLAVISYHSLEDRMVKSFFTAQSSSDWGPRGVGLTEPLKKAEFAVVTRKPVASGQQE 303

Query: 300 VAFNRRSRSAKLR 312
           ++ N RSRSAKLR
Sbjct: 304 LSLNPRSRSAKLR 316


>gi|237802695|ref|YP_002887889.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis
           B/Jali20/OT]
 gi|231273929|emb|CAX10721.1| S-adenosyl-L-methionine-dependent methyltransferase [Chlamydia
           trachomatis B/Jali20/OT]
          Length = 300

 Score =  164 bits (414), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 111/311 (35%), Positives = 165/311 (53%), Gaps = 24/311 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALD---RDPFAVSCGQE 76
           H+PVL+++ ++L       V  D T GAGG++ +F     ++   D   RD  A++  + 
Sbjct: 7   HIPVLVKESLSLFRDRNPVVFCDVTVGAGGHAEAFLTEFPSIERYDGSDRDLSALALSEN 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ-KSGPLDM 135
            +  +K++  L  A+F ++     D   DGV+ DLGVSSMQ++  +RGFSFQ +  PLDM
Sbjct: 67  RLLPFKDRVRLRHASFEEVDTLTSDGTYDGVLADLGVSSMQLNNLERGFSFQGEDHPLDM 126

Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM  S G++AS+V+N    +++  I    GEE      A A+V  R+     T +DL   
Sbjct: 127 RMDTSRGMTASEVLNSLREEEIGEIFRNYGEEPLWRSAAAAVVHFRKKKKILTVKDLKDA 186

Query: 195 IQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
                  +    +IHP T  FQALRI+VN E  +L   L S+ + L+ GG L V+SF SL
Sbjct: 187 TSGVFPSYRLRKKIHPLTLIFQALRIYVNQEGAQLKVLLDSSFRWLRPGGRLAVISFCSL 246

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           +DR VK  F     + +               + +TKKV++P+ E+   N RSRSAKLR 
Sbjct: 247 DDRPVKWAFREAEARGLG--------------KILTKKVIMPSYEETRMNPRSRSAKLRC 292

Query: 314 GMRTVERSIED 324
                E+S ED
Sbjct: 293 ----FEKSFED 299


>gi|293370481|ref|ZP_06617034.1| S-adenosyl-methyltransferase MraW [Bacteroides ovatus SD CMC 3f]
 gi|299147137|ref|ZP_07040204.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 3_1_23]
 gi|292634473|gb|EFF53009.1| S-adenosyl-methyltransferase MraW [Bacteroides ovatus SD CMC 3f]
 gi|298515022|gb|EFI38904.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 3_1_23]
          Length = 304

 Score =  164 bits (414), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 106/300 (35%), Positives = 162/300 (54%), Gaps = 16/300 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HVPVLL++ +  +N  P    +D TFG  G+SR        G  ++  D+D       + 
Sbjct: 9   HVPVLLKESVDGMNIQPDGTYVDVTFGGAGHSREILSRLGEGGRLLGFDQDE---DAERN 65

Query: 77  TMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + D    F   ++ F  L +   Y   + VD ++ DLGVSS   D  +RGFSF+  G L
Sbjct: 66  IVND--THFIFVRSNFRYLHNFLRYHDIEQVDAILADLGVSSHHFDDSERGFSFRFDGAL 123

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  +G++A+D+VN  + + L  IL + GE K + ++A  IVK R     +T  +  
Sbjct: 124 DMRMNKRAGMTAADIVNTYDEERLANILYLYGELKNSRKLASVIVKARSGQNIRTIGEFL 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I+    F +        + FQALRI VN E+E L + L +A +ALK GG L+V+++HS
Sbjct: 184 EIIKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLLAATEALKPGGRLVVITYHS 241

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK    + + +  A      +   P  F+ +  KV+VP + ++  N RSRSAKLR
Sbjct: 242 LEDRMVKNIMKTGNVEGKAETDFFGNLQTP--FRLVNNKVIVPDEAEIERNPRSRSAKLR 299


>gi|309804817|ref|ZP_07698881.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LactinV
           09V1-c]
 gi|309806276|ref|ZP_07700289.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LactinV
           03V1-b]
 gi|308165927|gb|EFO68146.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LactinV
           09V1-c]
 gi|308167260|gb|EFO69426.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LactinV
           03V1-b]
          Length = 280

 Score =  163 bits (413), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 99/255 (38%), Positives = 147/255 (57%), Gaps = 13/255 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H  VLL + I  LN     V +DATFG GG++    K  SN  +I  D+D +A+   +++
Sbjct: 7   HYSVLLHETIDNLNLKNDGVYVDATFGGGGHASYLLKQLSNGHLIGFDQDEYAIELAKKS 66

Query: 78  MRDY-----KEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             +      K + SL    F  LQ  +       G+DG+ +DLGVSS Q D  +RGFS++
Sbjct: 67  FSEVLKANSKPKLSLVHDNFGNLQQNLAKLGFIDGIDGIYYDLGVSSPQFDQPERGFSYR 126

Query: 129 KSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
            +  LDMRM     + A  +VN  + K+L+ IL   G+EK A +IA  IV +R   P  T
Sbjct: 127 FNARLDMRMDQTKDLDAYKIVNTWSQKELSNILFKYGDEKYARQIAKNIVAKRAIKPITT 186

Query: 188 TQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T +L  +I++ +  F++    HPA +SFQA+RI VN+E+E L + L  A + LK GG + 
Sbjct: 187 TFELVDIIKEAIPAFARRTGGHPAKKSFQAIRIAVNDELEVLEKSLLDAIEILKPGGRIC 246

Query: 247 VVSFHSLEDRLVKKF 261
           V++F SLED++VKK+
Sbjct: 247 VITFQSLEDKIVKKY 261


>gi|120437110|ref|YP_862796.1| S-adenosyl-methyltransferase MraW [Gramella forsetii KT0803]
 gi|171460858|sp|A0M534|RSMH_GRAFK RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|117579260|emb|CAL67729.1| S-adenosyl-methyltransferase MraW [Gramella forsetii KT0803]
          Length = 302

 Score =  163 bits (413), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 105/304 (34%), Positives = 173/304 (56%), Gaps = 17/304 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76
           H PVLL++ +  L+  P  + +D TFG GG+S+   K +G +  + A D+D  A+    E
Sbjct: 8   HNPVLLKESVDGLDVKPDGIYVDVTFGGGGHSKEILKRLGPDGKLYAFDQDKDALENKIE 67

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             R     F+L    F  L+ ++   G   VDGV+ D GVSS Q +  +RGFS +    L
Sbjct: 68  DGR-----FTLINENFRYLKRFLRFYGIKKVDGVLGDFGVSSHQFNEAERGFSTRFDAKL 122

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+    +SA +V+N+   + L ++     + K A ++A  IV  R++ P +T++ L+
Sbjct: 123 DMRMNQGDKLSAYEVINEYEEEQLKKLFWAYADLKNAPKLARTIVSERKNNPIETSEQLN 182

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            L++  ++  K N+I    + +QA+RI VN EIE L + L   E+ LK GG L ++S+HS
Sbjct: 183 DLLKPLLFKGKENKI--LAQIYQAIRIEVNQEIEVLKEFLLQTEEILKPGGRLSLISYHS 240

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDRLVK++  S   +    + M  + + P  F+ +   +++P++E++  N R+RSAKLR
Sbjct: 241 LEDRLVKRYIRSGLFEGEPEKDMYGNISVP--FKKVN-GLIIPSKEEIQQNNRARSAKLR 297

Query: 313 AGMR 316
              +
Sbjct: 298 VARK 301


>gi|308189974|ref|YP_003922905.1| S-adenosyl-methyltransferase [Mycoplasma fermentans JER]
 gi|319777256|ref|YP_004136907.1| s-adenosyl-methyltransferase mraw [Mycoplasma fermentans M64]
 gi|307624716|gb|ADN69021.1| S-adenosyl-methyltransferase [Mycoplasma fermentans JER]
 gi|318038331|gb|ADV34530.1| S-adenosyl-methyltransferase MraW [Mycoplasma fermentans M64]
          Length = 301

 Score =  163 bits (413), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 109/301 (36%), Positives = 164/301 (54%), Gaps = 18/301 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77
           H  VLL++ I  LN  P  + +D T G GG+S    K      +IA D+D FA+   ++ 
Sbjct: 5   HFSVLLQESIDALNIKPDGIYVDLTLGMGGHSSEILKRLDTGRLIAFDKDTFAIEESRKR 64

Query: 78  MRDYKE-QFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           +   K   F L  + F  ++   D +    VDG++ DLG+SS Q+D  +RGFS+ K+  L
Sbjct: 65  LSQIKSTNFQLIHSDFKNIKSELDKLNISQVDGIIADLGISSPQVDNDERGFSYNKNARL 124

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  S  + A  VVN  +   L ++L    E K A ++A AI+ +R   P  TT +L+
Sbjct: 125 DMRMDQSQKLDAYYVVNNYSESQLEQLLRNYAEVKLARQVAKAIISKR---PITTTLELA 181

Query: 193 SLIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            ++ +  Y +K  ++ +P    FQA+RI VNNE + L Q L+ A + LK    L V++FH
Sbjct: 182 QVV-RDAYPAKLVKLKNPNKAVFQAIRIEVNNEFDSLKQMLQDAIELLKPNTSLAVITFH 240

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLED +VK FF S       ++  +P+       +    KV +PT  ++  N+RSRSAKL
Sbjct: 241 SLEDSIVKHFFGS------LIKSKLPAKMPINEEKQYKVKVFLPTNNELELNKRSRSAKL 294

Query: 312 R 312
           R
Sbjct: 295 R 295


>gi|224029029|gb|ACN33590.1| unknown [Zea mays]
          Length = 436

 Score =  163 bits (413), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 120/349 (34%), Positives = 164/349 (46%), Gaps = 51/349 (14%)

Query: 20  HVPVLLEKVIALLN-PAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCGQ 75
           H+PVLL +V+A    P P +  +D T GA G+S +  +    +   I +D DP A+  G 
Sbjct: 88  HIPVLLGEVLAAFRRPRPLRSFVDCTLGAAGHSLAMMEAHPELELYIGMDVDPSALGIGH 147

Query: 76  E-----------------------TMRDYK--EQFSLFQATFSQLQD--YVPDKGVDGVV 108
                                   T+R Y   + F   +   S + +   V   GVDG++
Sbjct: 148 GHIEAFLAGREREANGGEDDALLGTLRAYTHVKNFKYIKQVLSSVDESLVVGSSGVDGIL 207

Query: 109 FDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEK 167
            DLG+SSMQ++  +RGFS  + GPLDMRM     + A D++N     +L RIL   GEE 
Sbjct: 208 IDLGMSSMQVNKSNRGFSVLQDGPLDMRMDPKATLRAEDILNSWPELELGRILREYGEES 267

Query: 168 QASRIAHAIVKRRQSAPFQTTQDLSSLIQK--TVYFSKNNRIHPATRSFQALRIFVNNEI 225
               +   IVK R      +T DL  LIQ+  T+   +   I  +TR FQALRI VN+E+
Sbjct: 268 NWQSVQKQIVKARSVGGLHSTGDLVKLIQRMCTISSGRQGWIKTSTRVFQALRIAVNDEL 327

Query: 226 EELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF---------ASRSGKVMAVRHMI 276
             L   L S    L  GG L V+SFHSLEDR+VKK F              K       I
Sbjct: 328 RVLEDSLHSCFDCLATGGRLAVISFHSLEDRIVKKTFLELIHGGEANEEDDKDDQALTDI 387

Query: 277 PSNAHPAVFQSI--------TKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
                P   Q +        TK+ + P+QE+   N+R RSAKLR   +T
Sbjct: 388 EDGDEPWSGQRVQGRNGTVLTKRPITPSQEEEKLNQRCRSAKLRVIQKT 436


>gi|160883877|ref|ZP_02064880.1| hypothetical protein BACOVA_01850 [Bacteroides ovatus ATCC 8483]
 gi|156110607|gb|EDO12352.1| hypothetical protein BACOVA_01850 [Bacteroides ovatus ATCC 8483]
          Length = 309

 Score =  163 bits (413), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 105/300 (35%), Positives = 162/300 (54%), Gaps = 16/300 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HVPVLL++ +  +N  P    +D TFG  G+SR        G  ++  D+D       + 
Sbjct: 14  HVPVLLKESVDGMNIQPDGTYVDVTFGGAGHSREILSRLGEGGRLLGFDQDE---DAERN 70

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + D    F   ++ F  L +++       VD ++ DLGVSS   D  +RGFSF+  G L
Sbjct: 71  IVND--THFIFVRSNFRYLHNFLRYHNIEQVDAILADLGVSSHHFDDSERGFSFRFDGAL 128

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  +G++A+D+VN  + + L  IL + GE K + ++A  IVK R     +T  +  
Sbjct: 129 DMRMNKRAGMTAADIVNTYDEERLANILYLYGELKNSRKLASVIVKARSGQNIRTIGEFL 188

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I+    F +        + FQALRI VN E+E L + L +A +ALK GG L+V+++HS
Sbjct: 189 EVIKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLLAATEALKPGGRLVVITYHS 246

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK    + + +  A      +   P  F+ +  KV+VP + ++  N RSRSAKLR
Sbjct: 247 LEDRMVKNIMKTGNVEGKAETDFFGNLQTP--FRLVNNKVIVPDEAEIERNPRSRSAKLR 304


>gi|297243796|ref|ZP_06927726.1| S-adenosylmethionine-dependent methyltransferase [Gardnerella
           vaginalis AMD]
 gi|296888217|gb|EFH26959.1| S-adenosylmethionine-dependent methyltransferase [Gardnerella
           vaginalis AMD]
          Length = 345

 Score =  163 bits (413), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 108/317 (34%), Positives = 172/317 (54%), Gaps = 13/317 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMG--SNVIA 63
           M+  +      H PVLL+  + L+ P+    G +++D T G  G++ +F K    + +I 
Sbjct: 1   MTDVMKDITAIHAPVLLQDCVDLVTPSLQHKGAIVVDCTLGLAGHATAFLKAAPFATLIG 60

Query: 64  LDRDPFAVSCGQETMRD--YKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQI 118
           +DRD  A+S   + MR    + +F    A F ++ + + +  +DG+     DLG+SS+QI
Sbjct: 61  IDRDAEALSLATQRMRSEGLENRFIPAHAAFDEIDEVLRENRIDGIDAAFMDLGLSSLQI 120

Query: 119 DCGDRGFSFQKSGPLDMRMSCSGISASDVVNQA-NVKDLTRILGILGEEKQASRIAHAIV 177
           D  DRGFS+     LDMRM  +  + +  +    + + LTRI    GEE+ AS IA  IV
Sbjct: 121 DETDRGFSYSHDTALDMRMDTTQATTAATILATYDSRGLTRIFREYGEERFASLIARRIV 180

Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
           + R + P  T+  L SL+   +  +     +PA R FQALRI VN E+++L+  L     
Sbjct: 181 EVRATEPIATSGQLVSLVDSVIPKAHRATGNPAKRVFQALRIEVNGELDKLSCTLPKIAL 240

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFF-ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296
            L+  G L+V S+HSLED  VK+F     +  V A   +IP +A P  F+++T+  +  +
Sbjct: 241 HLREHGRLVVESYHSLEDTAVKRFMNQGLTVDVPANMPVIPDDAQP-FFKALTRGAMKAS 299

Query: 297 QEDVAFNRRSRSAKLRA 313
           +E++  N RS S +LRA
Sbjct: 300 KEEIVHNTRSSSVRLRA 316


>gi|295086283|emb|CBK67806.1| S-adenosyl-methyltransferase MraW [Bacteroides xylanisolvens XB1A]
          Length = 304

 Score =  163 bits (413), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 106/300 (35%), Positives = 161/300 (53%), Gaps = 16/300 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HVPVLL++ +  +N  P    +D TFG  G+SR        G  ++  D+D       + 
Sbjct: 9   HVPVLLKESVDGMNIQPDGTYVDVTFGGAGHSREILSRLGEGGRLLGFDQDE---DAERN 65

Query: 77  TMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + D    F   ++ F  LQ+   Y   + VD ++ DLGVSS   D  +RGFSF+  G L
Sbjct: 66  IVND--PHFIFVRSNFRYLQNFLRYHDIEQVDAILADLGVSSHHFDDSERGFSFRFDGAL 123

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  +GI+A+D+VN    + L  +  + GE K + ++A  IVK R     +T  +  
Sbjct: 124 DMRMNKRAGITAADIVNTYEEERLANLFYLYGELKNSRKLASVIVKTRSGQNIRTIGEFL 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I+    F +        + FQALRI VN E+E L + L +A +ALK GG L+V+++HS
Sbjct: 184 EIIKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLLAATEALKPGGRLVVITYHS 241

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK    + + +  A      +   P  F+ +  KV+VP + ++  N RSRSAKLR
Sbjct: 242 LEDRMVKNIMKTGNVEGKAESDFFGNLQTP--FRLVNNKVIVPDEAEIERNPRSRSAKLR 299


>gi|302788300|ref|XP_002975919.1| hypothetical protein SELMODRAFT_175313 [Selaginella moellendorffii]
 gi|300156195|gb|EFJ22824.1| hypothetical protein SELMODRAFT_175313 [Selaginella moellendorffii]
          Length = 373

 Score =  163 bits (413), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 109/317 (34%), Positives = 163/317 (51%), Gaps = 26/317 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCGQE 76
           H PVL+ + +        K  LD T GAGG++    +    +   + +D DP A+   ++
Sbjct: 66  HTPVLVRQFLEHFEGRSVKTFLDCTVGAGGHAFEIIQAHPELETFVGMDVDPCALKLARQ 125

Query: 77  TMRDYK---EQFSLFQATFSQ----LQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFS 126
            + D      +  LF A F      L++  P+   +G DG++ DLG+SSMQ+D  +RGFS
Sbjct: 126 RLSDLSGSMAKVDLFHANFKNMKKDLKERNPELLERGFDGILLDLGLSSMQVDAPERGFS 185

Query: 127 FQKSGPLDMRMSCS---GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           +   GPLDMRM  S   G++A  + N  +  ++ RIL   GEE +   +A  IV  R + 
Sbjct: 186 YYLDGPLDMRMDSSDVLGLTAEAICNNWSAAEIGRILREYGEEMRWKFLASRIVDARLNG 245

Query: 184 PFQTTQDLSSLIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
             +TT+DL+S++       +  R  HPA R+FQALRI VN+E++ L   +  A   L  G
Sbjct: 246 GIKTTKDLASVVGGRFTSGRFKRARHPAARTFQALRIAVNDELKSLRSAIGHASSCLAPG 305

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G L V+SFHSLEDR+VK  F   S        ++   A  A F  +T   +     ++  
Sbjct: 306 GRLAVISFHSLEDRIVKYQFKELS--------LVFDKADLA-FMLLTTSPITADAAEIEK 356

Query: 303 NRRSRSAKLRAGMRTVE 319
           N R RSAK+R   R  +
Sbjct: 357 NSRCRSAKMRVIQRLCQ 373


>gi|291529266|emb|CBK94852.1| S-adenosyl-methyltransferase MraW [Eubacterium rectale M104/1]
          Length = 314

 Score =  163 bits (413), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 101/305 (33%), Positives = 169/305 (55%), Gaps = 14/305 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H  VL ++ I  LN  P  + +D T G  G+S    K  S+   +I +D+D  A+    E
Sbjct: 5   HYSVLRDETIENLNIRPDGIYVDGTLGGAGHSYEIAKRLSDKGRLIGIDQDADAIKAAGE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQ-KSGP 132
            + ++ ++ ++ ++ +S +++ +   G   VDG++ DLGVSS Q+D   RGF+++ +  P
Sbjct: 65  RLAEFGDRVTIVRSNYSDMKNVLHSLGIEKVDGIMLDLGVSSFQLDTPKRGFTYRSEDAP 124

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM   + ++A D+VN  +  DL RI+   GE+K A  IA  IV  RQ     TT +L
Sbjct: 125 LDMRMDDRNALTARDIVNTYSENDLYRIIRDYGEDKFAKNIAKHIVAARQKQEITTTGEL 184

Query: 192 SSLIQKTVYFSKNNRI---HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           + +I+  +   K  R    HP+ R++QA+RI +N+E++ L   L      L  GG + ++
Sbjct: 185 NEIIKAAI--PKKVRATGGHPSKRTYQAIRIELNHELDVLRDNLDDMIDLLNPGGRICII 242

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+VK  F              +    + +    IT+K ++P+++++  N RS+
Sbjct: 243 TFHSLEDRIVKSNFKKNENPCTCPPSFPVCVCGNKSKGTVITRKPILPSEKELEENSRSK 302

Query: 308 SAKLR 312
           SAKLR
Sbjct: 303 SAKLR 307


>gi|312196214|ref|YP_004016275.1| S-adenosyl-methyltransferase MraW [Frankia sp. EuI1c]
 gi|311227550|gb|ADP80405.1| S-adenosyl-methyltransferase MraW [Frankia sp. EuI1c]
          Length = 341

 Score =  163 bits (413), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 109/295 (36%), Positives = 169/295 (57%), Gaps = 12/295 (4%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCG 74
           H+PVLL++V  LL PA   PG + +DAT G GG++ +  +    +  + LDRDP A++  
Sbjct: 5   HIPVLLDRVRTLLTPALTQPGAIAVDATLGLGGHAEAMLRALPELRLVGLDRDPQALAAS 64

Query: 75  QETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +E +     +     A + ++    D +    V  V+FDLGVSS+Q+D  DRGF++ +  
Sbjct: 65  RERLAFAAGRVEFAHAVYDEIPAVLDRLGIPAVHAVLFDLGVSSLQLDLDDRGFAYSRDA 124

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM   +G +A+DV+N  +   L R+L   GEE  A RIA A+V  R    F T+  
Sbjct: 125 PLDMRMDPTTGRTAADVLNTYDEAALARVLRRYGEEPFARRIAAAVVAERAREAFTTSSR 184

Query: 191 LSSLIQKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ L++  +  +      +PA R+FQALRI VN E+E L + L +A   +  GG + V++
Sbjct: 185 LADLVRAAIPAAARRTGGNPAKRTFQALRIEVNAELEVLERALPAALDRIAVGGRIAVLA 244

Query: 250 FHSLEDRLVKKFFAS-RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
           +HSLEDRLVK+  A   + +V     ++P+ A P  F+ +T+    PT+ + A N
Sbjct: 245 YHSLEDRLVKRALADVTTTRVPPDMPVVPAEAEP-TFRLLTRGSEPPTEAETAAN 298


>gi|242373465|ref|ZP_04819039.1| S-adenosyl-methyltransferase MraW [Staphylococcus epidermidis
           M23864:W1]
 gi|242348828|gb|EES40430.1| S-adenosyl-methyltransferase MraW [Staphylococcus epidermidis
           M23864:W1]
          Length = 304

 Score =  163 bits (412), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 100/301 (33%), Positives = 162/301 (53%), Gaps = 11/301 (3%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETMRD 80
           +L + I  LN     V +D T G  G++       ++   +IA+D+D  A+   +E +++
Sbjct: 1   MLNETIDYLNIKEDGVYVDCTLGGAGHALYLLNQLNDEGRLIAIDQDLTAIENAKEVLKE 60

Query: 81  YKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
           +  + +     F +L + + +   + VDG+ +DLGVSS Q+D  +RGFS+     LDMRM
Sbjct: 61  HLHKVTFVHNNFRELTNILKELNIEKVDGIYYDLGVSSPQLDVPERGFSYHHDAKLDMRM 120

Query: 138 S-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
                +SA +VVN+ + + L +I    GEEK + +IA  I   R+  P +TT  L  +I+
Sbjct: 121 DQTQSLSAYEVVNEWSYEALVKIFYRYGEEKFSKQIARRIEANREQQPIETTLQLVDIIK 180

Query: 197 KTVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           + +  +K  R   HPA R FQA+RI VN+E+      +  A + +K  G + V++FHSLE
Sbjct: 181 EGIP-AKARRKGGHPAKRVFQAIRIAVNDELSAFEDSIEQAIENVKVNGRISVITFHSLE 239

Query: 255 DRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           DRL K+ F          R + I   A+    + + +K +  T+ED+  N R+RSAKLR 
Sbjct: 240 DRLCKQIFQEYEKGPEVPRGLPIIPEAYSPKLKRVNRKPITATEEDLDENNRARSAKLRV 299

Query: 314 G 314
            
Sbjct: 300 A 300


>gi|309809920|ref|ZP_07703768.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners SPIN
           2503V10-D]
 gi|308169708|gb|EFO71753.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners SPIN
           2503V10-D]
          Length = 280

 Score =  163 bits (412), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 99/255 (38%), Positives = 147/255 (57%), Gaps = 13/255 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H  VLL + I  LN     V +DATFG GG++    K  SN  +I  D+D +A+   +++
Sbjct: 7   HYSVLLHETIDNLNLKNDGVYVDATFGGGGHASYLLKQLSNGHLIGFDQDEYAIELAKKS 66

Query: 78  MRDY-----KEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             +      K + SL    F  LQ  +       G+DG+ +DLGVSS Q D  +RGFS++
Sbjct: 67  FLEVLKANSKPKLSLVHDNFGNLQQNLAKLGFIDGIDGIYYDLGVSSPQFDQPERGFSYR 126

Query: 129 KSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
            +  LDMRM     + A  +VN  + K+L+ IL   G+EK A +IA  IV +R   P  T
Sbjct: 127 FNARLDMRMDQTKDLDAYKIVNTWSQKELSNILFKYGDEKYARQIAKNIVAKRAIKPITT 186

Query: 188 TQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T +L  +I++ +  F++    HPA +SFQA+RI VN+E+E L + L  A + LK GG + 
Sbjct: 187 TFELVDIIKEAIPAFARRTGGHPAKKSFQAIRIAVNDELEVLEKSLLDAIEILKPGGRIC 246

Query: 247 VVSFHSLEDRLVKKF 261
           V++F SLED++VKK+
Sbjct: 247 VITFQSLEDKIVKKY 261


>gi|298245975|ref|ZP_06969781.1| S-adenosyl-methyltransferase MraW [Ktedonobacter racemifer DSM
           44963]
 gi|297553456|gb|EFH87321.1| S-adenosyl-methyltransferase MraW [Ktedonobacter racemifer DSM
           44963]
          Length = 320

 Score =  163 bits (412), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 108/298 (36%), Positives = 160/298 (53%), Gaps = 16/298 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           HV V+LE+V+  L P PG   +D T G GG++    +  +    V+ +D D  A +  Q 
Sbjct: 8   HVSVMLEEVMEYLRPQPGGHYIDGTLGGGGHTSVLLERSAPDGKVLGIDTDSKAQARVQA 67

Query: 77  TM-RDYKE-QFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            + ++  E +  L    FS ++    +     VDG++ DLG SS Q+D   RGFSF   G
Sbjct: 68  RLSKEVAEGRLILSHGNFSDMERLAQEAQFTSVDGILLDLGFSSDQMDDPQRGFSFSADG 127

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMR+S    ++A+D+VN    ++L  I    GEE+++ +IA  I + RQ      T  
Sbjct: 128 PLDMRLSQDLSLTAADLVNNTGEEELADIFWRYGEERRSRQIARRIGRERQKRAITRTSQ 187

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG---GLLIV 247
           L+ +    V + K   IHPATR FQALRI VN E+E L   L      L+AG   G +++
Sbjct: 188 LAEIAAAGVPY-KYGAIHPATRVFQALRIAVNQELESLETALPQMLSLLQAGGKQGRMVI 246

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDVAFN 303
           ++FHSLEDR+VK+F   R  +       IP     H A  + +T K +VP +++VA N
Sbjct: 247 IAFHSLEDRIVKEFL-RREARDCLCPPRIPMCICGHKASLRILTNKPIVPGEQEVAAN 303


>gi|313896117|ref|ZP_07829671.1| S-adenosyl-methyltransferase MraW [Selenomonas sp. oral taxon 137
           str. F0430]
 gi|312975542|gb|EFR41003.1| S-adenosyl-methyltransferase MraW [Selenomonas sp. oral taxon 137
           str. F0430]
          Length = 310

 Score =  163 bits (412), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 114/305 (37%), Positives = 156/305 (51%), Gaps = 16/305 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           HV VL  + +A L   P    +D T G  G++       S    +I +D+D  A++  Q 
Sbjct: 5   HVSVLPAETVAALAVVPEGTYVDCTLGGAGHAGRIAAQLSPAGRLIGIDQDETAIAAAQV 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +     + SL    F  L   +  +GV   DG++FDLGVSS QID   RGFS+ +  PL
Sbjct: 65  RLASAACRVSLVHDNFRNLTAILTAEGVSAVDGILFDLGVSSPQIDTAARGFSYMQDAPL 124

Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM    + SA  VVN+ +   LT I    GEE+ A RIA  I   R+  P +TT +L 
Sbjct: 125 DMRMDRRAVRSAHTVVNEYSAARLTEIFYTYGEERWAKRIAAFIEAARKERPIETTGELV 184

Query: 193 SLIQKTVYFSKNNRI---HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            +I + V   K  R    HPA R FQA+RI VN E+  L+  + +A  ALK GG L V++
Sbjct: 185 EIIDRAV--PKKVRAKGGHPAKRVFQAIRIEVNEELTILSDAVTAAVHALKPGGRLAVIT 242

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           FHSLEDR+VK+     +   +   H  P+    H    + I K       E  A N R++
Sbjct: 243 FHSLEDRIVKRTMQQLARGCICPPHT-PACICGHTPELRLIGKAQTASLAE-CAVNARAK 300

Query: 308 SAKLR 312
           SAKLR
Sbjct: 301 SAKLR 305


>gi|291563991|emb|CBL42807.1| S-adenosyl-methyltransferase MraW [butyrate-producing bacterium
           SS3/4]
          Length = 311

 Score =  163 bits (412), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 105/311 (33%), Positives = 179/311 (57%), Gaps = 11/311 (3%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGY----SRSFCKMGSNVIALDRDPFAVS 72
           I +H  VLL + +  LN  P  + +D T G GG+    SR   + G  +I +D+D  A++
Sbjct: 2   IFEHKSVLLMETVDSLNVKPDGIYVDGTLGGGGHAYEVSRRLGEKG-RLIGIDQDADAIA 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK 129
              E +  +K++ ++ ++ +  +++ + + G   VDG+  DLGVSS Q+D  DRGFS+++
Sbjct: 61  AATERLLPFKDKVTIVRSNYKNIREVLFNLGIEKVDGIYLDLGVSSYQLDTADRGFSYRE 120

Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM   +  +A+D+VN  +  +L RI+   GE++ A  IA  IV+ R+  P +TT
Sbjct: 121 DAPLDMRMDQRNDKTAADIVNGYSEMELYRIIRDYGEDRFAKNIAKHIVREREIHPIETT 180

Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
             L+ +I+  +    +    HPA R+FQA+RI +N+E++ L   + +    L  GG L +
Sbjct: 181 LQLAEIIRGAIPAKIRAEGGHPAKRTFQAIRIELNHELDVLNDSIDTMIDLLNPGGRLSI 240

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           ++FHSLEDR+VK  F +     +      +      +  + +T+K +VP+ E++  NRRS
Sbjct: 241 ITFHSLEDRIVKTRFRTNENPCICPPDFPVCVCGRKSKGRVVTRKPIVPSDEELEENRRS 300

Query: 307 RSAKLRAGMRT 317
           +S+KLR   R+
Sbjct: 301 KSSKLRVFERS 311


>gi|42559428|sp|P60399|RSMH_SPIKU RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|37781879|gb|AAP42766.1| putative S-adenosylmethionine-dependent methyltransferase
           [Spiroplasma kunkelii CR2-3x]
          Length = 313

 Score =  163 bits (412), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 112/304 (36%), Positives = 165/304 (54%), Gaps = 12/304 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H  VLL++ I+ LN     + +D T G  G+S    K   N  +   ++D  A+   +E 
Sbjct: 5   HQTVLLQEAISGLNVQNNGIYVDCTLGRAGHSLEILKHLPNGKLYCFEQDEAAIVVSEEI 64

Query: 78  MRDYK-EQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           ++  K   + + +  F  L   +     K V+G+++DLGVSS Q+D   RGFS++   PL
Sbjct: 65  LQKSKYRNYEIIKNNFVNLAAELQLRNVKAVNGILYDLGVSSPQLDDDKRGFSYRYDSPL 124

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+   G++A  VVN  + + L ++    GEE  A  IA  IV  R      TT  L 
Sbjct: 125 DMRMNQHQGLTAKTVVNTYSQEALVKLFQDYGEEPFAKVIAKTIVIARNEQEIVTTFHLV 184

Query: 193 SLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
            +I+K++     K  + HPA R FQALRI VN E+  L + LR A   L   G L+V+SF
Sbjct: 185 EIIKKSLPQKILKKAK-HPAKRVFQALRIEVNQELFVLQESLRQATTLLAVHGRLVVISF 243

Query: 251 HSLEDRLVKKFFASRSGK-VMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+VKK+F S +      +   +P+ ++  + +  ITKKV+V +  +   N RSRS
Sbjct: 244 HSLEDRIVKKYFQSLTKDPNYEINQQLPAISYFESDYHIITKKVIVSSVTEQTNNHRSRS 303

Query: 309 AKLR 312
           AKLR
Sbjct: 304 AKLR 307


>gi|329122136|ref|ZP_08250744.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Dialister
           micraerophilus DSM 19965]
 gi|327466943|gb|EGF12459.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Dialister
           micraerophilus DSM 19965]
          Length = 310

 Score =  163 bits (412), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 105/309 (33%), Positives = 171/309 (55%), Gaps = 20/309 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQE 76
           HV VL  ++I+ +      V  D T G  G+        + G+ +I +D+D  A+   + 
Sbjct: 5   HVTVLRREMISAILTDKNGVYADCTLGGAGHLSLLSEKVENGALLIGIDQDLDALKAAEL 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            M+D     +   + FS +++ + +K    ++G +FDLGVSS Q+D  +RGFS+   G L
Sbjct: 65  RMKDCTCNLNFVHSNFSNIKNILSEKNLNQINGFIFDLGVSSYQLDEANRGFSYMHEGRL 124

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  S ++A DVVN+ + + +  I+   GEE+ A RIA  IV  R++   +TT +L 
Sbjct: 125 DMRMNQNSELTAHDVVNKYSEEKIAFIIKEYGEERWAKRIAEFIVDYRKNKIIETTGELV 184

Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           S+I+  +   ++ N  HPA R+FQA+RI VNNE+  +   +      L +GG + +++FH
Sbjct: 185 SIIKAAIPLGARKNGPHPAKRTFQAIRIEVNNELGIIESTINDCVDCLVSGGRIGIITFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV------VVPTQEDVAFNRR 305
           SLEDR+VK+ F     K +A + + P    P    +  +K+      + PT E++A N R
Sbjct: 245 SLEDRIVKRTF-----KNLAKQCICPP-EFPLCVCNHQRKIKLLGNGIRPTDEEIAENPR 298

Query: 306 SRSAKLRAG 314
           +RSA LR  
Sbjct: 299 ARSAILRVA 307


>gi|295398679|ref|ZP_06808703.1| S-adenosyl-methyltransferase MraW [Aerococcus viridans ATCC 11563]
 gi|294973114|gb|EFG48917.1| S-adenosyl-methyltransferase MraW [Aerococcus viridans ATCC 11563]
          Length = 316

 Score =  162 bits (411), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 101/304 (33%), Positives = 164/304 (53%), Gaps = 11/304 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+ VLL + +  L   P  + +D T G  G+S       S+   +IA D+D  A+   ++
Sbjct: 7   HISVLLNESVDGLAIKPNGIYVDCTLGGAGHSSKIAAALSDEGRLIAFDQDLVAIGNAEK 66

Query: 77  TMRDYKE--QFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +    E  + +L    F  +Q  +      GVDG+++DLGVSS Q+D  +RGFS+ +  
Sbjct: 67  VLAAEIESGKVTLVHNNFRHIQSELEKMGITGVDGILYDLGVSSPQLDEIERGFSYHQDA 126

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM     ++A  ++N     DL RI    GEEK + +IA  I +RR       T++
Sbjct: 127 PLDMRMDQTQALTAETIINDWEYNDLVRIFYRYGEEKFSKQIARKIEQRRADHRITRTEE 186

Query: 191 LSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  ++++ +   ++    HPA R FQA+RI VN+E+  +   L  A   L  GG +  +S
Sbjct: 187 LVDIVKEAIPAPARRKGGHPAKRIFQAVRIAVNDELGAIEDSLEQALNLLNVGGRVSAIS 246

Query: 250 FHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           F SLEDR+VK+ F   S G+ +     + +    A F+ + +K +  ++E++A+N R++S
Sbjct: 247 FQSLEDRIVKQMFKDASTGEELPANLPVINADIEAPFKLVNRKPIYASEEELAYNSRAQS 306

Query: 309 AKLR 312
           AKLR
Sbjct: 307 AKLR 310


>gi|315920696|ref|ZP_07916936.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313694571|gb|EFS31406.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 309

 Score =  162 bits (411), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 105/300 (35%), Positives = 162/300 (54%), Gaps = 16/300 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HVPVLL++ +  +N  P    +D TFG  G+SR        G  ++  D+D       + 
Sbjct: 14  HVPVLLKESVDGMNIQPDGTYVDVTFGGAGHSREILSRLGEGGRLLGFDQDE---DAERN 70

Query: 77  TMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + D    F   ++ F  L +   Y   + VD ++ DLGVSS   D  +RGFSF+  G L
Sbjct: 71  IVND--THFIFVRSNFRYLHNFLRYHNIEQVDAILADLGVSSHHFDDSERGFSFRFDGAL 128

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  +G++A+D+VN  + + L  IL + GE K + ++A  IVK R     +T  +  
Sbjct: 129 DMRMNKRAGMTAADIVNTYDEERLANILYLYGELKNSRKLASVIVKARSGQNIRTIGEFL 188

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +++    F +        + FQALRI VN E+E L + L +A +ALK GG L+V+++HS
Sbjct: 189 EVVKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLLAATEALKPGGRLVVITYHS 246

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK    + + +  A      +   P  F+ +  KV+VP + ++  N RSRSAKLR
Sbjct: 247 LEDRMVKNIMKTGNVEGKAETDFFGNLQTP--FRLVNNKVIVPDEAEIERNPRSRSAKLR 304


>gi|263447803|sp|Q2NIH4|RSMH_AYWBP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 303

 Score =  162 bits (411), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 106/305 (34%), Positives = 162/305 (53%), Gaps = 15/305 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H+ VL ++ I  L   P  + +DAT G  G++     +     + + D+D  A +  ++T
Sbjct: 8   HISVLKKEAIDFLKIKPEGIYVDATLGQCGHTIEIANLLQQGFLYSFDQDVEACTNAKKT 67

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           +  +     +  + F         K   +DG++FDLG+SS QID   RGFS+  + PLDM
Sbjct: 68  LSPHLP-IEIIHSIFRIXSPISTTKSFSLDGILFDLGLSSCQIDNPQRGFSYLHNTPLDM 126

Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM+ +  I+A  ++N  +   L  I  + GE K AS +   I+K+R   P QT+ DL S+
Sbjct: 127 RMNINQTITAQYILNNYSFAQLKNIFKLYGEVKNASLVVSEIIKQR---PLQTSYDLVSI 183

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
             +   F    + H A + FQALRI VN E+E L Q L  +   LK    ++V+SFHSLE
Sbjct: 184 TDR---FCNLQKGHSAKKIFQALRIEVNQELESLKQALEQSLDLLKPNARIVVISFHSLE 240

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAV-FQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           DR++K FF   S  V+  +  +P    P      ITKK  +P++E++  N RS SAKLR 
Sbjct: 241 DRIIKHFFKKHSTFVLPKK--LPIAIIPQTPLSIITKKAFLPSEEEMQNNSRSISAKLRV 298

Query: 314 GMRTV 318
            ++ V
Sbjct: 299 AVKNV 303


>gi|291288111|ref|YP_003504927.1| S-adenosyl-methyltransferase MraW [Denitrovibrio acetiphilus DSM
           12809]
 gi|290885271|gb|ADD68971.1| S-adenosyl-methyltransferase MraW [Denitrovibrio acetiphilus DSM
           12809]
          Length = 308

 Score =  162 bits (411), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 105/306 (34%), Positives = 168/306 (54%), Gaps = 10/306 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQE 76
           H+PV++ +V+  L   P  + LD T G GG+S +  +   +   ++ LDRD  AV+  +E
Sbjct: 3   HIPVMIREVLKYLPVDPDGITLDMTGGGGGHSAAMLEKISLKGRLVILDRDLDAVARLKE 62

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             +      ++  + FS     + + G   V  V+ D GVS   +   +RGFSF+  GPL
Sbjct: 63  RFKGTP-NVTIAHSNFSDFDRVLGELGISSVTSVLADFGVSLYHLKVAERGFSFRSEGPL 121

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+    +SA+DVVN  + ++L+ I+   GEE  A  IA AI + R+    +TT  L+
Sbjct: 122 DMRMNQDDTLSAADVVNSYSRENLSSIIKKYGEENFAWNIAGAIERAREVEKIETTTRLA 181

Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            ++   V   ++   I+PAT++FQALRIFVN+E++ + + L   E  +  GG +  +SFH
Sbjct: 182 EIVASAVPRKAQKPGINPATKTFQALRIFVNSELDSIEEMLGKLENYVDEGGRVAFISFH 241

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPA-VFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK  F     + +    +   N      F+ IT+K + P ++++  N  SRSAK
Sbjct: 242 SLEDRIVKDAFREFEKECVCPPELPVCNCSKVRTFRQITRKPLEPREDELEMNPLSRSAK 301

Query: 311 LRAGMR 316
           +R   R
Sbjct: 302 MRVAER 307


>gi|313891489|ref|ZP_07825102.1| S-adenosyl-methyltransferase MraW [Dialister microaerophilus UPII
           345-E]
 gi|313120066|gb|EFR43245.1| S-adenosyl-methyltransferase MraW [Dialister microaerophilus UPII
           345-E]
          Length = 310

 Score =  162 bits (411), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 105/309 (33%), Positives = 171/309 (55%), Gaps = 20/309 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQE 76
           HV VL  ++I+ +      V  D T G  G+        + G+ +I +D+D  A+   + 
Sbjct: 5   HVTVLRREMISAVLTDKNGVYADCTLGGAGHLSLLSEKVENGALLIGIDQDLDALKAAEL 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            M+D     +   + FS +++ + +K    ++G +FDLGVSS Q+D  +RGFS+   G L
Sbjct: 65  RMKDCTCNLNFVHSNFSNIKNILSEKNLNKINGFIFDLGVSSYQLDEANRGFSYMHEGRL 124

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  S ++A DVVN+ + + +  I+   GEE+ A RIA  IV  R++   +TT +L 
Sbjct: 125 DMRMNQNSELTAHDVVNKYSEEKIAFIIKEYGEERWAKRIAEFIVDYRKNKIIETTGELV 184

Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           S+I+  +   ++ N  HPA R+FQA+RI VNNE+  +   +      L +GG + +++FH
Sbjct: 185 SIIKAAIPLGARKNGPHPAKRTFQAIRIEVNNELGIIESTINDCVDCLVSGGRIGIITFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV------VVPTQEDVAFNRR 305
           SLEDR+VK+ F     K +A + + P    P    +  +K+      + PT E++A N R
Sbjct: 245 SLEDRIVKRTF-----KNLAKQCICPP-EFPLCVCNHQRKIKLLGNGIRPTDEEIAENPR 298

Query: 306 SRSAKLRAG 314
           +RSA LR  
Sbjct: 299 ARSAILRVA 307


>gi|325280032|ref|YP_004252574.1| Ribosomal RNA small subunit methyltransferase H [Odoribacter
           splanchnicus DSM 20712]
 gi|324311841|gb|ADY32394.1| Ribosomal RNA small subunit methyltransferase H [Odoribacter
           splanchnicus DSM 20712]
          Length = 302

 Score =  162 bits (411), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 104/300 (34%), Positives = 167/300 (55%), Gaps = 15/300 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQE 76
           HVPVLL++ +  L+   G V LD TFG GG+S    K       ++  D+D  A++   E
Sbjct: 5   HVPVLLKESVDGLDIRQGGVYLDLTFGGGGHSGEILKRLDAEGCLLGFDQDEDALANVPE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             R     F      F  L++++   G    DG++ DLGVSS + D   RGFSF+    L
Sbjct: 65  DDR-----FIFVNHNFRYLRNFMRYYGYEEADGILADLGVSSHEFDEAGRGFSFRFEAEL 119

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  S ++A+ V+N  + + LT I    GE + A R+   IVK R +   +T++   
Sbjct: 120 DMRMNQRSKLTAATVLNTYDAEQLTAIFRNYGEVENARRLVDLIVKARANQEIKTSEAFY 179

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I   +   K  +     + +QALRI VN E+E L + ++ A + LK GG L+++++HS
Sbjct: 180 QIILPCIPKLKEKKY--LAKVYQALRIEVNGELEALEEMMQQAMEVLKPGGRLVIITYHS 237

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK F  + + +    + ++  + H   F+ + +KV+VP++E++  N R+RSAKLR
Sbjct: 238 LEDRIVKNFLKAGNAEGKLEKDLVFGHVHHN-FELVNRKVIVPSEEEIVRNPRARSAKLR 296


>gi|326406411|gb|ADZ63482.1| S-adenosyl-methyltransferase MraW [Lactococcus lactis subsp. lactis
           CV56]
          Length = 317

 Score =  162 bits (411), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 106/307 (34%), Positives = 168/307 (54%), Gaps = 11/307 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H  VLL + + +L   P  + +DAT G  G+S       +N  + + D+D  A    +  
Sbjct: 9   HDTVLLHETVDMLEVKPNGIYVDATLGGAGHSEYLLSKLTNGHLYSFDQDETAHENAKVR 68

Query: 78  MRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + +   +++ +L ++ F  L+  + + GV   DG+++DLGVSS Q D   RGFS++K   
Sbjct: 69  LSEQLAEDKVTLIKSNFRYLKSALAELGVTKIDGILYDLGVSSPQFDDSQRGFSYKKEAR 128

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  +  +SA +VVN    + L RI    GE+K + +IA  I + R+  P +TT +L
Sbjct: 129 LDMRMDQNQTLSAYEVVNDYPYETLVRIFFRYGEDKFSKQIARKIEQARKIKPIETTIEL 188

Query: 192 SSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           + LI+  +   +   + HPA R FQA+RI VN+E+    + +  A   LK  G + V++F
Sbjct: 189 ADLIKSALPQKELKKKGHPAKRIFQAIRIEVNDELGAAEESIEQAIDLLKVDGRISVITF 248

Query: 251 HSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDRL K  F   S   V     M+P +   A  + I +K V+ ++E++ FN R+ SA
Sbjct: 249 HSLEDRLTKTIFKEYSTVNVPKGLPMLPKDME-AKLKLINRKPVLASEEELEFNNRAHSA 307

Query: 310 KLRAGMR 316
           KLR   +
Sbjct: 308 KLRVAQK 314


>gi|238924611|ref|YP_002938127.1| S-adenosyl-methyltransferase MraW [Eubacterium rectale ATCC 33656]
 gi|263433305|sp|C4ZD30|RSMH2_EUBR3 RecName: Full=Ribosomal RNA small subunit methyltransferase H 2;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase 2;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH 2
 gi|238876286|gb|ACR75993.1| S-adenosyl-methyltransferase MraW [Eubacterium rectale ATCC 33656]
          Length = 314

 Score =  162 bits (411), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 99/303 (32%), Positives = 168/303 (55%), Gaps = 10/303 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H  VL ++ I  LN  P  + +D T G  G+S    K  S+   +I +D+D  A+    E
Sbjct: 5   HYSVLRDETIENLNIRPDGIYVDGTLGGAGHSYEIAKRLSDKGRLIGIDQDADAIKAAGE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQ-KSGP 132
            + ++ ++ ++ ++ +S +++ +   G   VDG++ DLGVSS Q+D   RGF+++ +  P
Sbjct: 65  RLAEFGDRVTIVRSNYSDMKNVLHSLGIEKVDGIMLDLGVSSFQLDTPKRGFTYRSEDAP 124

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM   + ++A D+VN  +  DL RI+   GE+K A  IA  IV  RQ     TT +L
Sbjct: 125 LDMRMDDRNALTARDIVNTYSENDLYRIIRDYGEDKFAKNIAKHIVAARQKQEITTTGEL 184

Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           + +I+  +    +    HP+ R++QA+RI +N+E++ L   L      L  GG + +++F
Sbjct: 185 NEIIKAAIPQKVRATGGHPSKRTYQAIRIELNHELDVLRDNLDDMIDLLNPGGRICIITF 244

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  F              +    + +    IT+K ++P+++++  N RS+SA
Sbjct: 245 HSLEDRIVKSNFKKNENPCTCPPSFPVCVCGNKSKGTVITRKPILPSEKELEENSRSKSA 304

Query: 310 KLR 312
           KLR
Sbjct: 305 KLR 307


>gi|260172400|ref|ZP_05758812.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. D2]
          Length = 304

 Score =  162 bits (410), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 104/300 (34%), Positives = 162/300 (54%), Gaps = 16/300 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HVPVLL++ +  +N  P    +D TFG  G+SR        G  ++  D+D       + 
Sbjct: 9   HVPVLLKESVDGMNIQPDGTYVDVTFGGAGHSREILSRLGEGGRLLGFDQDE---DAERN 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + D    F   ++ F  L +++       VD ++ DLGVSS   D  +RGFSF+  G L
Sbjct: 66  IVND--THFIFVRSNFRYLHNFLRYHNIEQVDAILADLGVSSHHFDDSERGFSFRFDGAL 123

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  +G++A+D+VN  + + L  IL + GE K + ++A  IVK R     +T  +  
Sbjct: 124 DMRMNKRAGMTAADIVNTYDEERLANILYLYGELKNSRKLASVIVKARSGQNIRTIGEFL 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +++    F +        + FQALRI VN E+E L + L +A +ALK GG L+V+++HS
Sbjct: 184 EVVKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLLAATEALKPGGRLVVITYHS 241

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK    + + +  A      +   P  F+ +  KV+VP + ++  N RSRSAKLR
Sbjct: 242 LEDRMVKNIMKTGNVEGKAETDFFGNLQTP--FRLVNNKVIVPDEAEIERNPRSRSAKLR 299


>gi|153809202|ref|ZP_01961870.1| hypothetical protein BACCAC_03513 [Bacteroides caccae ATCC 43185]
 gi|149128178|gb|EDM19398.1| hypothetical protein BACCAC_03513 [Bacteroides caccae ATCC 43185]
          Length = 304

 Score =  162 bits (410), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 104/300 (34%), Positives = 161/300 (53%), Gaps = 16/300 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HVPVLL++ +  +N  P    +D TFG  G+SR        G  ++  D+D       + 
Sbjct: 9   HVPVLLKESVDGMNIRPDGTYVDVTFGGAGHSREILSRLGEGGRLLGFDQDE---DAERN 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + D    F+  ++ F  L +++       VD ++ DLGVSS   D  +RGFSF+  G L
Sbjct: 66  IVND--PHFTFVRSNFRYLHNFLRYHNIEQVDAILADLGVSSHHFDDSERGFSFRFDGDL 123

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  +G++A+D++N    + L  I  + GE K + ++A  IVK R     +T  +  
Sbjct: 124 DMRMNKRAGLTAADILNTYEEERLADIFYLYGELKNSRKLASVIVKARNGQQIRTIGEFL 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I+    F +        + FQALRI VN E+E L + L +A +ALK GG L+V+++HS
Sbjct: 184 EIIKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLLAATEALKPGGRLVVITYHS 241

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK    + + +  A      +   P  F+ +  KV+VP Q ++  N RSRSAKLR
Sbjct: 242 LEDRMVKNIMKTGNVEGKAESDFFGNLQTP--FRLVNNKVIVPDQAEIERNPRSRSAKLR 299


>gi|300774439|ref|ZP_07084302.1| S-adenosyl-methyltransferase MraW [Chryseobacterium gleum ATCC
           35910]
 gi|300506254|gb|EFK37389.1| S-adenosyl-methyltransferase MraW [Chryseobacterium gleum ATCC
           35910]
          Length = 297

 Score =  162 bits (410), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 106/305 (34%), Positives = 168/305 (55%), Gaps = 17/305 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H PVLL++ +  L   P  + +D TFG GG+SR      S+   + + D+D  A+   + 
Sbjct: 3   HNPVLLKQSVDDLVTNPDGIYVDCTFGGGGHSREILSRLSDKGRLFSFDQDLDAL---KN 59

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           T+ D   +F+L    F  L++ +   GV   DG++ DLGVSS Q D  DRGFS + + PL
Sbjct: 60  TIDD--PRFTLVNQNFRFLENSLLMYGVSQVDGILADLGVSSHQFDEADRGFSTRSNAPL 117

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+    + A  V+N+   ++L  +    GE ++A ++A  IV  R++   +TT+DL 
Sbjct: 118 DMRMNVMQNLDAKRVINEYEEEELADLFYHYGELREARKLAREIVHHRKTKSIETTEDLK 177

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            L    +   K N+ +   + FQA+RI VN E+E L + L  A   LK  G L+V+S+HS
Sbjct: 178 KLFS-YIPPHKVNKFY--AQLFQAIRIEVNQELEVLKEMLVQAYNVLKPEGRLVVISYHS 234

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDRLVK+F   ++G             +   F+ +  K ++P  +++  N R+RSAK+R
Sbjct: 235 LEDRLVKRFL--KNGMFEGEPERDIYGNYKKAFELVKSKAIIPDDKEIEENSRARSAKMR 292

Query: 313 AGMRT 317
            G++ 
Sbjct: 293 TGIKV 297


>gi|302770288|ref|XP_002968563.1| hypothetical protein SELMODRAFT_89216 [Selaginella moellendorffii]
 gi|300164207|gb|EFJ30817.1| hypothetical protein SELMODRAFT_89216 [Selaginella moellendorffii]
          Length = 373

 Score =  162 bits (410), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 106/310 (34%), Positives = 159/310 (51%), Gaps = 26/310 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCGQE 76
           H PVL+ + +        K  LD T GAGG++    +    +   + +D DP A+   ++
Sbjct: 66  HTPVLVRQFLEHFEGRSVKTFLDCTVGAGGHAFEIIQAHPELETFVGMDVDPCALKLARQ 125

Query: 77  TMRDYK---EQFSLFQATFSQ----LQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFS 126
            + D      +  LF A F      L++  P+   +G DG++ DLG+SSMQ+D  +RGFS
Sbjct: 126 RLSDLSGSMAKVDLFHANFKNMKKDLKERNPELLERGFDGILLDLGLSSMQVDAPERGFS 185

Query: 127 FQKSGPLDMRMSCS---GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           +   GPLDMRM  S   G++A  + N  +  ++ RIL   GEE +   +A  IV  R + 
Sbjct: 186 YYLDGPLDMRMDSSDVLGLTAEAICNNWSAAEIGRILREYGEEMRWKFLASRIVDARLNG 245

Query: 184 PFQTTQDLSSLIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
             +TT+DL+S++       +  R  HPA R+FQALRI VN+E++ L   +  A   L  G
Sbjct: 246 GIKTTKDLASVVGGRFTSGRFKRARHPAARTFQALRIAVNDELKSLRSAIGQASSCLAPG 305

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G L V+SFHSLEDR+VK  F   S         +  +     F  +T   +     ++  
Sbjct: 306 GRLAVISFHSLEDRIVKYQFKELS---------LVFDKVDLAFMLLTTSPITADAAEIEK 356

Query: 303 NRRSRSAKLR 312
           N R RSAK+R
Sbjct: 357 NSRCRSAKMR 366


>gi|291525276|emb|CBK90863.1| S-adenosyl-methyltransferase MraW [Eubacterium rectale DSM 17629]
          Length = 314

 Score =  162 bits (410), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 99/303 (32%), Positives = 168/303 (55%), Gaps = 10/303 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H  VL ++ I  LN  P  + +D T G  G+S    K  S+   +I +D+D  A+    E
Sbjct: 5   HYSVLRDETIENLNIRPDGIYVDGTLGGAGHSYEIAKRLSDKGRLIGIDQDADAIKAAGE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQ-KSGP 132
            + ++ ++ ++ ++ +S +++ +   G   VDG++ DLGVSS Q+D   RGF+++ +  P
Sbjct: 65  RLAEFGDRVTIVRSNYSDMKNVLHSLGIEKVDGIMLDLGVSSFQLDTPKRGFTYRSEDAP 124

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM   + ++A D+VN  +  DL RI+   GE+K A  IA  IV  RQ     TT +L
Sbjct: 125 LDMRMDDRNALTARDIVNTYSENDLYRIIRDYGEDKFAKNIAKHIVAARQKQEITTTGEL 184

Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           + +I+  +    +    HP+ R++QA+RI +N+E++ L   L      L  GG + +++F
Sbjct: 185 NEIIKAAIPQKVRATGGHPSKRTYQAIRIELNHELDVLRDSLDDMIDLLNPGGRICIITF 244

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  F              +    + +    IT+K ++P+++++  N RS+SA
Sbjct: 245 HSLEDRIVKSNFKKNENPCTCPPSFPVCVCGNKSKGTVITRKPILPSEKELEENSRSKSA 304

Query: 310 KLR 312
           KLR
Sbjct: 305 KLR 307


>gi|226953729|ref|ZP_03824193.1| S-adenosylmethionine methyltransferase [Acinetobacter sp. ATCC
           27244]
 gi|294651784|ref|ZP_06729082.1| S-adenosylmethionine methyltransferase [Acinetobacter haemolyticus
           ATCC 19194]
 gi|226835517|gb|EEH67900.1| S-adenosylmethionine methyltransferase [Acinetobacter sp. ATCC
           27244]
 gi|292822341|gb|EFF81246.1| S-adenosylmethionine methyltransferase [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 307

 Score =  162 bits (410), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 112/308 (36%), Positives = 171/308 (55%), Gaps = 20/308 (6%)

Query: 20  HVPVLL-EKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQ 75
           H+ VLL E V  +L      V +DATFG GG+++    K+  N  V A D+DP A+    
Sbjct: 3   HISVLLHETVDGVLAGRDTGVYVDATFGRGGHTKLLLSKLDPNARVYAFDKDPQALEVAA 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + +     +F +  A+F+ +Q  +   G   VDG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 63  Q-LEQEDSRFKIIHASFADIQAELAKIGIIEVDGIMADLGVSSPQLDQAERGFSFMQDGP 121

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G++A++ + +   + L  I+   GEE+ + RIA AI   + +    TT  L
Sbjct: 122 LDMRMDNSQGLTAAEWLLEIEEEKLANIIYQYGEERYSRRIAKAI---KLAGEITTTAQL 178

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++ K  +       HPATR+FQA+RI +N E++++   L  A + LK  G L V+SFH
Sbjct: 179 AEIV-KVAHPKWEKHKHPATRTFQAIRIAINKELDDIEIFLPQAVELLKPTGQLAVISFH 237

Query: 252 SLEDRLVKKFFASRSGKVMAVRH---MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SLEDRL+K+F    S   +A  H   M  +       + +++  +  ++ +V  N RSRS
Sbjct: 238 SLEDRLIKQFIQKES--TLAEDHGWGMPQAQIDTRRLKKVSR--IRASEAEVKANPRSRS 293

Query: 309 AKLRAGMR 316
           A LR   R
Sbjct: 294 AWLRVAER 301


>gi|15672847|ref|NP_267021.1| hypothetical protein L87561 [Lactococcus lactis subsp. lactis
           Il1403]
 gi|20139138|sp|Q9CH73|RSMH_LACLA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|12723794|gb|AAK04963.1|AE006321_1 hypothetical protein L87561 [Lactococcus lactis subsp. lactis
           Il1403]
          Length = 317

 Score =  162 bits (410), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 106/307 (34%), Positives = 168/307 (54%), Gaps = 11/307 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H  VLL + + +L   P  + +DAT G  G+S       +N  + + D+D  A    +  
Sbjct: 9   HDTVLLHETVDMLEVKPNGIYVDATLGGAGHSEYLLSKLTNGHLYSFDQDETAHENAKVR 68

Query: 78  MRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + +   +++ +L ++ F  L+  + + GV   DG+++DLGVSS Q D   RGFS++K   
Sbjct: 69  LSEQLAEDKVTLIKSNFRYLKSALAELGVTKIDGILYDLGVSSPQFDDSQRGFSYKKEAR 128

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  +  +SA +VVN    + L RI    GE+K + +IA  I + R+  P +TT +L
Sbjct: 129 LDMRMDQNQTLSAYEVVNDYPYEALVRIFFRYGEDKFSKQIARKIEQARKIKPIETTIEL 188

Query: 192 SSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           + LI+  +   +   + HPA R FQA+RI VN+E+    + +  A   LK  G + V++F
Sbjct: 189 ADLIKSALPQKELKKKGHPAKRIFQAIRIEVNDELGAAEESIEQAIDLLKVDGRISVITF 248

Query: 251 HSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDRL K  F   S   V     M+P +   A  + I +K V+ ++E++ FN R+ SA
Sbjct: 249 HSLEDRLTKTIFKEYSTVNVPKGLPMLPKDME-AKLKLINRKPVLASEEELEFNNRAHSA 307

Query: 310 KLRAGMR 316
           KLR   +
Sbjct: 308 KLRVAQK 314


>gi|332976677|gb|EGK13517.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Psychrobacter sp. 1501(2011)]
          Length = 347

 Score =  162 bits (410), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 111/321 (34%), Positives = 172/321 (53%), Gaps = 30/321 (9%)

Query: 20  HVPVLL-EKVIALLNPAPGK--------------VILDATFGAGGYSRSFCKMGSN---V 61
           H  VLL E V A+L   P K              + +DATFG GG+S+   +  S+   +
Sbjct: 21  HETVLLYETVAAVLGKNPTKKSSKATDSDPKVSGIFVDATFGRGGHSKLLLESLSDDGQL 80

Query: 62  IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQI 118
              D+DP A++  +E  +    + ++   +F+ +   + + G   V+G++ DLGVSS Q+
Sbjct: 81  FVFDKDPEAIAVAEEIAKS-DNRVTVVHDSFANITHCLNEHGITQVNGIMADLGVSSPQL 139

Query: 119 DCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177
           D G RGFSF + G +DMRM  S G S  + +   + ++L  +L   GEE+ + RIA AI 
Sbjct: 140 DDGSRGFSFMRDGAIDMRMDTSRGQSVGEWLETVDEEELANVLYDFGEERHSRRIARAI- 198

Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
             +Q   + +T +L+ +I K  +       HPAT+SFQA+RIF+NNE+ ++   L+ +  
Sbjct: 199 --KQMERYTSTLELAEVI-KQAHPKWQKGKHPATQSFQAMRIFINNELGDIDSFLQQSLT 255

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296
            L   G L V+SFHSLEDR +K+F    S G+     ++      P  F     K + P+
Sbjct: 256 LLAPEGQLAVISFHSLEDRRIKQFLQRHSRGQYPEDENLPMPPVRPRYFSK--PKRIAPS 313

Query: 297 QEDVAFNRRSRSAKLRAGMRT 317
           + +V+ N RSRSA LR   RT
Sbjct: 314 KAEVSVNNRSRSAWLRVATRT 334


>gi|269469017|gb|EEZ80581.1| S-adenosylmethionine-dependent methyltransferase [uncultured SUP05
           cluster bacterium]
          Length = 233

 Score =  162 bits (410), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 90/217 (41%), Positives = 133/217 (61%), Gaps = 7/217 (3%)

Query: 104 VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM-SCSGISASDVVNQANVKDLTRILGI 162
           +DG++ DLGVSS Q+D   RGFSF   GPLDMRM    G+SA+  +  AN  ++  +L  
Sbjct: 14  IDGILMDLGVSSPQLDNAQRGFSFNHDGPLDMRMDQTQGMSAAQWLTSANETEIADVLYQ 73

Query: 163 LGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVN 222
            GEE+++ RIA AI + +Q     TT  L+++I   +   KN   HPATRSFQA+RIF+N
Sbjct: 74  YGEERKSRRIASAIKRYQQDKSIDTTLQLANIIASVIKTQKNK--HPATRSFQAIRIFIN 131

Query: 223 NEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNA 280
            E+++L++ L    + L  GG L+V+SFHS+EDR+VK+F    S +  A + +  + S  
Sbjct: 132 QELKQLSETLDQIIELLACGGRLVVISFHSIEDRIVKQFIQKHSRQKQAPKGLPVMDSEF 191

Query: 281 HPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
                + + KK    ++E++  N+RSRSA LR   RT
Sbjct: 192 KKTALKDLGKKFA--SKEELQTNKRSRSAILRTAQRT 226


>gi|146299563|ref|YP_001194154.1| S-adenosyl-methyltransferase MraW [Flavobacterium johnsoniae UW101]
 gi|189082215|sp|A5FIX6|RSMH_FLAJ1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|146153981|gb|ABQ04835.1| S-adenosyl-methyltransferase MraW [Flavobacterium johnsoniae UW101]
          Length = 302

 Score =  162 bits (410), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 109/304 (35%), Positives = 169/304 (55%), Gaps = 17/304 (5%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVS 72
           T+  H PVLL   +  L+  P  + +D TFG GG+S+   + +G N  + A D+D  A++
Sbjct: 4   TMEYHNPVLLHPTVDGLDIKPDGIYVDVTFGGGGHSKEILRRLGPNGKLFAFDQDEDALA 63

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK 129
                     E+F+L    F  ++ ++   G   VDG++ DLGVSS Q D  +RGFS + 
Sbjct: 64  NALPD-----ERFTLINENFRFIKRFLRFHGIKAVDGILADLGVSSHQFDVPERGFSTRF 118

Query: 130 SGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
              LDMRMS  + ++A  VVN+   +DL R+    GE K A  +A  IV+ R   P +TT
Sbjct: 119 DAELDMRMSQKNDLNAYRVVNEYEEQDLRRVFFDYGELKNAPVLARTIVEARHHRPIKTT 178

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L  +++K  Y  +  R     + +QA+RI VN E++ L + +  + + LK GG   V+
Sbjct: 179 DELKEVLKK--YLPEKVRNKILAQIYQAIRIEVNQEMDVLKEFIEQSLEILKPGGRFSVI 236

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           S+HSLEDRLVK+F  +   +    R    + + P  F++I  K++VP  E++  N R+RS
Sbjct: 237 SYHSLEDRLVKRFIKNGMFEGEPERDFYGNFSVP--FKTIG-KLIVPDDEEIKINNRARS 293

Query: 309 AKLR 312
           AKLR
Sbjct: 294 AKLR 297


>gi|325182849|emb|CCA17304.1| SadenosylLmethioninedependent methyltransferase mraWlike protein
           putative [Albugo laibachii Nc14]
          Length = 365

 Score =  162 bits (410), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 109/333 (32%), Positives = 177/333 (53%), Gaps = 36/333 (10%)

Query: 20  HVPVLLEKVIALLNPAPGKV---ILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCG 74
           HVPVL++ V  LL     KV    +DAT G  G+++   +   N+  + +DRDP  +S  
Sbjct: 31  HVPVLIKSVTKLLVSEEMKVPRYFVDATVGCAGHAQKILESDPNIRMLCIDRDPEVLSIA 90

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            + ++ +  +      +++ L++++   G    V G++ DLGV+S+  D  +RGFS+ + 
Sbjct: 91  TDNLKKFTSRVKFVNGSYADLENHLKVSGFPSEVSGILVDLGVNSLHYDKPERGFSWLRD 150

Query: 131 GPLDMRMSCSGIS---ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP--- 184
           GPL+MR   S  +   A+D++  ++  +LTRI    GE K A   A AIV++R++A    
Sbjct: 151 GPLNMRFDESDSTIDCAADILQTSSEVELTRIFREYGELKCAKEYAKAIVRKRETAAPGS 210

Query: 185 --FQTTQDLSSLIQKTV-----------YFSKNNR---IHPATRSFQALRIFVNNEIEEL 228
             F+TT  L   I++             + SK NR     P T  FQALRI VN E+  +
Sbjct: 211 RAFETTFHLRDAIEEVAAKWRPKRLSPSHASKTNRSSLARPITGCFQALRIQVNKELAHV 270

Query: 229 AQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFAS-----RSGKVMAVRHMIPSNAHPA 283
            +G+      L  G  L+ ++FHSLEDR +K+ F +     + G++ +++  +  +    
Sbjct: 271 HEGVPVLANHLTPGARLVTIAFHSLEDRPIKQIFRTLAHELKDGQLDSLQCDLSKSLRGK 330

Query: 284 VFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
            F+ I KKVV P +E+V  N RSRSA+LR   R
Sbjct: 331 TFRFINKKVVKPCREEVVENPRSRSARLRCLER 363


>gi|260578096|ref|ZP_05846017.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Corynebacterium jeikeium ATCC 43734]
 gi|258603735|gb|EEW16991.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Corynebacterium jeikeium ATCC 43734]
          Length = 342

 Score =  162 bits (410), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 102/325 (31%), Positives = 172/325 (52%), Gaps = 24/325 (7%)

Query: 20  HVPVLLEKVIALL------NPAPGK-VILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70
           H+PV+ ++++ L+        AP + VI+D T GAGG+S +F     +  V+ LDRDP A
Sbjct: 7   HIPVMRDRMVELVGLGVNSENAPARPVIVDGTLGAGGHSEAFLDAFPHAIVVGLDRDPNA 66

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPD-------------KGVDGVVFDLGVSSMQ 117
           ++     +  + ++F  +Q  F  + + + D              G+ G +FDLGVSSMQ
Sbjct: 67  LAEANARLARFGDRFVSYQTRFDGVTEALEDLMEQGKLPASVREHGISGFLFDLGVSSMQ 126

Query: 118 IDCGDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
           +D  +RGF++    PLDMRM   S ++A++++N  +  ++ RIL   G+E+ A +IA A+
Sbjct: 127 LDQPERGFAYAVDAPLDMRMDPSSPLTAAEILNTYSHGEIARILKTYGDERFAGKIASAV 186

Query: 177 VKRRQSAPFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           V+ R+  PF+ +  L  L+  T+   S+    HPA R+FQALR+ VN E+E L   +   
Sbjct: 187 VREREKQPFENSARLVELLYATIPAASRRTGGHPAKRTFQALRVEVNAELESLENLIPEI 246

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295
            + L  G + + +S+ SLED++VKK     S         +      A F+  T      
Sbjct: 247 SRWLHVGAVGVFMSYQSLEDKIVKKALVQLSTSKTPPGLPMELPGMEAEFELRTSGAEKA 306

Query: 296 TQEDVAFNRRSRSAKLRAGMRTVER 320
           ++ ++  N R+   ++RA  R  +R
Sbjct: 307 SEAEIEQNSRAAPVRVRAYSRVSDR 331


>gi|187251661|ref|YP_001876143.1| putative S-adenosylmethionine-dependent methyltransferase
           [Elusimicrobium minutum Pei191]
 gi|263447006|sp|B2KE60|RSMH_ELUMP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|186971821|gb|ACC98806.1| putative S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [Elusimicrobium minutum
           Pei191]
          Length = 293

 Score =  162 bits (410), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 109/299 (36%), Positives = 160/299 (53%), Gaps = 22/299 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H+PVL +++  +L      V +D T G GG+++    +    + +I  D+D  AV   + 
Sbjct: 6   HIPVLTKEIGQMLITDINGVYIDGTLGLGGHTKYLLGLLGKEAKIIGFDKDYNAVKMAEA 65

Query: 77  TMRDYK-EQFSL-FQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
            + D +    +L ++A    L+D     G DGV+ DLG+SS Q+D   RGFSF   GPLD
Sbjct: 66  NVADGRLTAINLSYEAAPKVLKDLKIQGGADGVLLDLGLSSYQLDDASRGFSFMGGGPLD 125

Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MR   SG  +A+DVVN    ++L RI    GEE  A   A AIV+ R     +TT +L++
Sbjct: 126 MRFDISGQKTAADVVNSYTAEELERIFANYGEETNARNAAAAIVRARVDKKIKTTSELAN 185

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           ++       +  + H ATR FQALRI VN+E+  + + ++   + LK GG   V++FHSL
Sbjct: 186 ILAPV--LPRRGKTHGATRVFQALRIEVNDELGTVERFIKVLPEVLKPGGRAAVITFHSL 243

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           EDR+VK  F   S +                 + + K V+ P  E+V  NRRSRSAKLR
Sbjct: 244 EDRIVKNIFKQMSAE--------------GEVKLVNKHVIEPEWEEVKNNRRSRSAKLR 288


>gi|325954324|ref|YP_004237984.1| ribosomal RNA small subunit methyltransferase H [Weeksella virosa
           DSM 16922]
 gi|323436942|gb|ADX67406.1| Ribosomal RNA small subunit methyltransferase H [Weeksella virosa
           DSM 16922]
          Length = 301

 Score =  162 bits (410), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 106/304 (34%), Positives = 169/304 (55%), Gaps = 17/304 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H PVLL++ +  L   P  V +D TFG GG+SR    ++  N  + A D+D       Q 
Sbjct: 7   HNPVLLQESVDALVVNPSGVYVDCTFGGGGHSREILSRLDDNGRLYAFDQDE---DAKQN 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + D  E+F L    F  L++ +  +GV   DG++ DLGVSS Q D  +RGFS +  G L
Sbjct: 64  KIED--ERFELIDQNFRYLKNNLRFRGVKQVDGILADLGVSSHQFDTPERGFSIRFDGEL 121

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  S +SA ++VN+ +   L  I    GE K + R+A  I+K R +   +T + L 
Sbjct: 122 DMRMNINSSLSAKNIVNEYDEDQLADIFYNYGELKGSRRLASEIIKARNNQSIETIEHLK 181

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +     +  KN       + FQALRI VN+E+  L + L  + + ++  G L+V+S+HS
Sbjct: 182 DIFS---FIPKNKENKFFAQVFQALRIEVNDEMAALREMLLQSGEIVRPEGRLVVISYHS 238

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDRLVK++  +   +    R +  + + P  F+ +  KV+VP+++++  N R+RSAK+R
Sbjct: 239 LEDRLVKRYMRNGVFEGEPERDIYGNWSAP--FKPLQSKVIVPSEKEIEENSRARSAKMR 296

Query: 313 AGMR 316
             ++
Sbjct: 297 IAVK 300


>gi|68535817|ref|YP_250522.1| S-adenosyl-methyltransferase MraW [Corynebacterium jeikeium K411]
 gi|88909195|sp|Q4JWA3|RSMH_CORJK RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|68263416|emb|CAI36904.1| S-adenosyl-methyltransferase [Corynebacterium jeikeium K411]
          Length = 342

 Score =  162 bits (409), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 102/325 (31%), Positives = 172/325 (52%), Gaps = 24/325 (7%)

Query: 20  HVPVLLEKVIALL------NPAPGK-VILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70
           H PV+ ++++ L+        AP + VI+D T GAGG+S +F     +  V+ LDRDP A
Sbjct: 7   HTPVMRDRMVELVGLGVNSENAPARPVIVDGTLGAGGHSEAFLDAFPHAIVVGLDRDPNA 66

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPD-------------KGVDGVVFDLGVSSMQ 117
           ++     +  + ++F  +Q  F  + + + D              G+ G +FDLGVSSMQ
Sbjct: 67  LAEANARLARFGDRFVSYQTRFDGVTEALEDLMEQGKLPASVREHGISGFLFDLGVSSMQ 126

Query: 118 IDCGDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
           +D  +RGF++    PLDMRM   S ++A++++N  +  ++ RIL   G+E+ A +IA A+
Sbjct: 127 LDQPERGFAYAVDAPLDMRMDPSSPLTAAEILNTYSHGEIARILKTYGDERFAGKIASAV 186

Query: 177 VKRRQSAPFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           V+ R+  PF+ +  L  L+  T+   S+    HPA R+FQALR+ VN E+E L   +   
Sbjct: 187 VREREKQPFENSARLVELLYATIPAASRRTGGHPAKRTFQALRVEVNAELESLENLIPEI 246

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295
            + L  G + + +S+ SLED++VKK     S         +      A F+  T+     
Sbjct: 247 SRWLHVGAVGVFMSYQSLEDKIVKKALVQLSTSKTPPGLPMELPGMEAEFELRTRGAEKA 306

Query: 296 TQEDVAFNRRSRSAKLRAGMRTVER 320
           ++ ++  N R+   ++RA  R  +R
Sbjct: 307 SEAEIEQNSRAAPVRVRAYSRVSDR 331


>gi|88856505|ref|ZP_01131162.1| S-adenosyl-methyltransferase [marine actinobacterium PHSC20C1]
 gi|88814159|gb|EAR24024.1| S-adenosyl-methyltransferase [marine actinobacterium PHSC20C1]
          Length = 329

 Score =  162 bits (409), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 100/303 (33%), Positives = 158/303 (52%), Gaps = 9/303 (2%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           H PVLLE+ I LL PA   PG V++D T G  G++ +F +      ++ +DRD  A++  
Sbjct: 19  HTPVLLERSIELLAPALEAPGAVLVDGTLGMAGHAEAFLQRFPELTLVGIDRDEDALAIA 78

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +  +  +  +     A + ++   +   G   V G+ FDLGVSS+Q+D  +RGFS+ +  
Sbjct: 79  RRRLEPFASRTHFVHAVYEEIPTALASLGFPNVQGIFFDLGVSSLQLDRVERGFSYSQDA 138

Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  S  ++A  ++   +  +L RI    G+EK A R A  IV+ R+  P  T+  
Sbjct: 139 PLDMRMDASTPVTAEHILATYSELELRRIFYSYGDEKLAPRFASRIVQFREQQPLTTSAQ 198

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L  LI      +     HPA R FQALRI VN E+  L + + +A  +L  GG ++V+++
Sbjct: 199 LVELIIAATPAAAQRAGHPAKRVFQALRIEVNQELSVLERAIPAAINSLALGGRMVVLAY 258

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
            SLEDR+VK+    RS         +    H A  + + +     +  +   N R++  +
Sbjct: 259 QSLEDRIVKRELQRRSRSTAPAGLPVELPEHKAELKLLVRGSEQASDAEQQTNPRAKPVR 318

Query: 311 LRA 313
           LRA
Sbjct: 319 LRA 321


>gi|225848381|ref|YP_002728544.1| S-adenosyl-methyltransferase MraW [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|262825703|sp|C1DTV7|RSMH_SULAA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|225643386|gb|ACN98436.1| S-adenosyl-methyltransferase MraW [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 293

 Score =  162 bits (409), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 109/306 (35%), Positives = 172/306 (56%), Gaps = 24/306 (7%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76
           +H  VL  +V+           +DAT G GG+S    K      +I +D+D +A+   +E
Sbjct: 3   EHYSVLHREVLEFTKDLKEGYFIDATVGGGGHSYLILKQNPKLKIIGVDKDDYALEVAKE 62

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++D++ +FSL +++F  +   V D  V+   G++FD GVS  Q+    RGFSFQ+  PL
Sbjct: 63  RLKDFEGRFSLVKSSFKDIDKIVKDLDVNPVVGILFDFGVSHFQLKLP-RGFSFQREEPL 121

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  S  ++A  VVN      L  I+   GEEK A RIA  IV+ R+    +TT++L+
Sbjct: 122 DMRMDTSSELTAYYVVNYYPESRLFNIISKYGEEKFAKRIAKNIVEYRKKKKIETTKELA 181

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            ++ ++   + +++RIHPAT++FQA+RI VNNE+ E+ + L  A   +   G++I +SFH
Sbjct: 182 DIVYRSYPPNLRHSRIHPATKTFQAIRIEVNNELLEIEEALEKAIHIVSKEGIIITISFH 241

Query: 252 SLEDRLVKKFFAS-RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK  F   +  K + +               +TKK + P ++++  N  SRSAK
Sbjct: 242 SLEDRIVKNTFKKYKELKFLDI---------------LTKKPITPKEDEIRENPASRSAK 286

Query: 311 LRAGMR 316
           +R   R
Sbjct: 287 MRVARR 292


>gi|206602140|gb|EDZ38622.1| S-adenosyl-methyltransferase (MraW) [Leptospirillum sp. Group II
           '5-way CG']
          Length = 307

 Score =  162 bits (409), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 108/301 (35%), Positives = 163/301 (54%), Gaps = 23/301 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQ-ETM 78
           H+PV+ ++V+ +L+  PG+  +DAT G GG++R+  + G +VIA+DRDP A+   + E +
Sbjct: 17  HLPVMTKEVLEVLDVQPGQWYVDATLGQGGHARAILEAGGSVIAIDRDPKAIEKARLELL 76

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVD--GVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
             + E+  L     + + +++   GVD  GVV D G S  Q      G SF   GPLDMR
Sbjct: 77  PVFGERLRLTCMNHAGMGEFLSSMGVDVSGVVLDSGWSMAQASESGAGLSFDAEGPLDMR 136

Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF-QTTQDLSSL 194
           M  +   +A D++   + ++L  I    GEE  A  I+ A+V+ R      +T ++L++ 
Sbjct: 137 MDPTLQRTAMDILEHQSAEELAEIFSNFGEEPLAMPISRALVQSRSRGRLPRTPKELAAF 196

Query: 195 IQKTVYFSKN---NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           +   VY+ K    +R HPATR F ALRI VN EI+ L +G+      L +G  L V++FH
Sbjct: 197 V-SGVYYRKGYRRSRRHPATRVFMALRIEVNGEIDSLVRGVSGVRSILVSGARLAVLTFH 255

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           S EDR +K  F    G V              + QS   K V+P + ++  N RSRSAKL
Sbjct: 256 SREDREIKHLF---RGWV--------REGWGRLLQS---KPVLPGKAEIEQNPRSRSAKL 301

Query: 312 R 312
           R
Sbjct: 302 R 302


>gi|255533217|ref|YP_003093589.1| S-adenosyl-methyltransferase MraW [Pedobacter heparinus DSM 2366]
 gi|255346201|gb|ACU05527.1| S-adenosyl-methyltransferase MraW [Pedobacter heparinus DSM 2366]
          Length = 301

 Score =  162 bits (409), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 115/304 (37%), Positives = 159/304 (52%), Gaps = 16/304 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76
           HVPVLL   I  LN  P  V +D TFG GG+S    K +G    +IA D+DP A     +
Sbjct: 6   HVPVLLAACIDGLNIRPEGVYVDVTFGGGGHSIEILKKLGDKGVLIAFDQDPDARRNEID 65

Query: 77  TMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             R     F      F+ L++    +  K VDG++ DLGVSS Q +  +RGFS +    L
Sbjct: 66  DPR-----FHFVDQNFAFLKNNLRLLGFKAVDGILADLGVSSHQFNEPERGFSTRFDAAL 120

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM   G ++A++V+N      L +I GI GE K A  +A AIV  R   P  T  D  
Sbjct: 121 DMRMDKQGKLTAAEVLNTYTEDQLHKIFGIYGEVKNAKSLARAIVTGRVERPVLTLADFK 180

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           ++    +   K ++     + FQALRI VN E+E L   L      +K GG L+V+S+HS
Sbjct: 181 AVAAAHIPKGKEHKY--MAQVFQALRIEVNAEMEVLENFLSQTADVIKPGGRLVVMSYHS 238

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR VK F A    +    +    +   P  F+++T+K +V   E++  N R+RSAKLR
Sbjct: 239 LEDRPVKNFIAKGKFRGEVDKDFFGNEQKP--FKAVTRKAIVADAEELERNSRARSAKLR 296

Query: 313 AGMR 316
            G R
Sbjct: 297 VGER 300


>gi|313203980|ref|YP_004042637.1| s-adenosyL-methyltransferase mraw [Paludibacter propionicigenes
           WB4]
 gi|312443296|gb|ADQ79652.1| S-adenosyl-methyltransferase MraW [Paludibacter propionicigenes
           WB4]
          Length = 319

 Score =  162 bits (409), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 110/319 (34%), Positives = 171/319 (53%), Gaps = 16/319 (5%)

Query: 1   MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGS 59
           ++ K+   +S++    I  H+P LL++ I  LN  P  V +D TFG GG+SR   K +G+
Sbjct: 3   IKKKNIDAVSTSGAEEIAYHIPALLDETITGLNIKPNGVYVDVTFGGGGHSREILKHLGA 62

Query: 60  N--VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVS 114
           +  ++  D+D  A+   + T+ D   +F   ++ F  +++++   G   VDG++ DLGVS
Sbjct: 63  DGKLLGFDQDEDAI---KNTIDD--PRFIFVRSNFRYMKNFLKYHGIDKVDGILADLGVS 117

Query: 115 SMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIA 173
           S   D  +RGFSF+  G LDMRM+  S  +A+ ++N    + L  +  + GE   + +IA
Sbjct: 118 SHHFDEAERGFSFRFDGALDMRMNTKSSFTAAALLNTYTEEQLADVFYLYGELHNSRKIA 177

Query: 174 HAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLR 233
             IV  R SAPF        +++   +F +        R FQALRI VN E++ L   L 
Sbjct: 178 RTIVAARNSAPFDRIFPFIEVLKP--FFGREKEKKDMARVFQALRIEVNKEMDVLKALLD 235

Query: 234 SAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV 293
            + + L   G L V+++HSLEDRLVK F   RSG               A  +++  KV+
Sbjct: 236 QSIEVLNPQGRLAVLTYHSLEDRLVKNFI--RSGNFEGKLEKDFYGNILAPLKAVNTKVI 293

Query: 294 VPTQEDVAFNRRSRSAKLR 312
           V  + +VA N R+RSAKLR
Sbjct: 294 VADEAEVARNPRARSAKLR 312


>gi|283780728|ref|YP_003371483.1| S-adenosyl-methyltransferase MraW [Pirellula staleyi DSM 6068]
 gi|283439181|gb|ADB17623.1| S-adenosyl-methyltransferase MraW [Pirellula staleyi DSM 6068]
          Length = 318

 Score =  162 bits (409), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 110/318 (34%), Positives = 168/318 (52%), Gaps = 41/318 (12%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR----------SFCKMGSN-------VI 62
           HV V+  ++I  L P+ G ++LD T GAGG++R          +  K   N       V+
Sbjct: 20  HVSVMPREIIEWLRPSAGSILLDGTLGAGGHTRLLAEAIDAAENLAKSTGNTQFSPGYVL 79

Query: 63  ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQID 119
           + DRD  A++  +  ++       L  A F +L   + + GV GV   V DLG+SS Q+ 
Sbjct: 80  SSDRDEAALARAEVHLKGLP--VKLVHANFCELPSVLEELGVTGVQGCVLDLGLSSDQLA 137

Query: 120 CGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178
              RGFSF  +G LD+R   S G  A  ++ +   +++  I+   GEE+ + RIA  I +
Sbjct: 138 DDARGFSFDATGELDLRFDTSTGDPAWKLLEKLREEEIANIIYQFGEERLSRRIARKICE 197

Query: 179 RRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           +R   P +T  +L+ ++++ V    + +I PATR+FQALRI VN E++ L + L    + 
Sbjct: 198 QRIIKPIRTADELARIVRRCVPRG-DGKIDPATRTFQALRIAVNGELDALKKALEKIPEC 256

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L  GG L ++SFHSLEDRLVK+ F S       +R             ++TKK +    +
Sbjct: 257 LAPGGRLAIISFHSLEDRLVKEAFRS------DLR-----------LNNLTKKPLTALDD 299

Query: 299 DVAFNRRSRSAKLRAGMR 316
           ++A N RSRSAKLR   R
Sbjct: 300 ELASNPRSRSAKLRVAER 317


>gi|260642625|ref|ZP_05416656.2| S-adenosyl-methyltransferase MraW [Bacteroides finegoldii DSM
           17565]
 gi|260621294|gb|EEX44165.1| S-adenosyl-methyltransferase MraW [Bacteroides finegoldii DSM
           17565]
          Length = 309

 Score =  161 bits (408), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 106/300 (35%), Positives = 161/300 (53%), Gaps = 16/300 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HVPVLL++ +  +N  P    +D TFG  G+SR        G  ++  D+D  A    + 
Sbjct: 14  HVPVLLKESVDGMNIRPDGTYVDVTFGGAGHSREILSRLGEGGRLLGFDQDEDA----ER 69

Query: 77  TMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + D    F   ++ F  L +   Y   + VD ++ DLGVSS   D  +RGFSF+  G L
Sbjct: 70  NIVD-DPHFIFVRSNFRYLHNFLRYHDIEQVDAILADLGVSSHHFDDSERGFSFRFDGDL 128

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  +G++A+D+VN    + L  I  + GE K + ++A  IVK R     +T  +  
Sbjct: 129 DMRMNKRAGLTAADIVNTYEEERLANIFYLYGELKNSRKLASVIVKARNGQAIRTIGEFL 188

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I+    F +        + FQALRI VN E+E L + L +A +ALK GG L+V+++HS
Sbjct: 189 EVIKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLLAATEALKPGGRLVVITYHS 246

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK    + + +  A      +   P  F+ +  KV+VP + ++  N RSRSAKLR
Sbjct: 247 LEDRMVKNIMKTGNVEGKAESDFFGNLNTP--FRLVNNKVIVPDETEIERNPRSRSAKLR 304


>gi|281491359|ref|YP_003353339.1| S-adenosyl-methyltransferase MraW [Lactococcus lactis subsp. lactis
           KF147]
 gi|281375100|gb|ADA64618.1| S-adenosyl-methyltransferase MraW [Lactococcus lactis subsp. lactis
           KF147]
          Length = 317

 Score =  161 bits (408), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 105/307 (34%), Positives = 168/307 (54%), Gaps = 11/307 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77
           H  VLL + + +L   P  + +DAT G  G+S          ++ + D+D  A    +  
Sbjct: 9   HDTVLLHETVDMLEVKPNGIYVDATLGGAGHSEYLLSKLTDGHLYSFDQDETAHENAKVR 68

Query: 78  MRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + +   +++ +L ++ F  L+  + + GV   DG+++DLGVSS Q D   RGFS++K   
Sbjct: 69  LSEQLAEDKVTLIKSNFRYLKSALAELGVTKIDGILYDLGVSSPQFDDSQRGFSYKKEAR 128

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  +  +SA +VVN+   + L RI    GE+K + +IA  I + R+  P +TT +L
Sbjct: 129 LDMRMDQNQTLSAYEVVNEYPYEALVRIFFRYGEDKFSKQIARKIEQARKIKPIETTIEL 188

Query: 192 SSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           + LI+  +   +   + HPA R FQA+RI VN+E+    + +  A   LK  G + V++F
Sbjct: 189 ADLIKSALPQKELKKKGHPAKRIFQAIRIEVNDELGAAEESIEQAIDLLKVDGRISVITF 248

Query: 251 HSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDRL K  F   S   V     M+P +   A  + I +K V+ ++E++ FN R+ SA
Sbjct: 249 HSLEDRLTKTIFKEYSTVNVPKGLPMLPKDME-AKLKLINRKPVLASEEELEFNNRAHSA 307

Query: 310 KLRAGMR 316
           KLR   +
Sbjct: 308 KLRVAQK 314


>gi|78213939|ref|YP_382718.1| methyltransferase [Synechococcus sp. CC9605]
 gi|123577439|sp|Q3AGW9|RSMH_SYNSC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|78198398|gb|ABB36163.1| methyltransferase [Synechococcus sp. CC9605]
          Length = 294

 Score =  161 bits (408), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 115/307 (37%), Positives = 167/307 (54%), Gaps = 32/307 (10%)

Query: 20  HVPVLLEKVI--ALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQ 75
           HVPVL + V+  A   P P  +++DAT G GG+S    +   G  +I LD+D  A +   
Sbjct: 6   HVPVLADAVLDAARRIPRPDGLLIDATLGGGGHSALLLEQHPGLRLIGLDQDATARAAAA 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           E +  + ++ S+    F+   DYVP +    V+ DLGVSS Q+D  +RGFSF+  GPLDM
Sbjct: 66  ERLASFGDRVSIVATNFA---DYVPPEPAVMVLADLGVSSPQLDVAERGFSFRLDGPLDM 122

Query: 136 RMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI---VKRRQSAPFQTTQD 190
           RM+    G +A++++++    +L  ++   GEE+ + RIA  I   +K R S  +  T  
Sbjct: 123 RMNAGGEGETAAELIDRLEENELADLIYGYGEERLSRRIARRIKADLKDRGS--YDGTAA 180

Query: 191 LSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+  +       S+  RIHPATR+FQALRI VN+E+  L + L+ A   L+  GLL ++S
Sbjct: 181 LAYAVAGCYPPKSRRGRIHPATRTFQALRIAVNDELGVLDRLLQQAPDWLEPDGLLGIIS 240

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDR VK  F                       Q IT+K VV T+++   N R+RSA
Sbjct: 241 FHSLEDRRVKTAFLRDE-----------------RLQRITRKPVVATEQEEEANPRTRSA 283

Query: 310 KLRAGMR 316
           K R   R
Sbjct: 284 KWRVAQR 290


>gi|251772190|gb|EES52760.1| S-adenosyl-methyltransferase MraW [Leptospirillum
           ferrodiazotrophum]
          Length = 305

 Score =  161 bits (408), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 111/303 (36%), Positives = 169/303 (55%), Gaps = 25/303 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H PV+L + +  L+  PG+  +DA  G GG++R     G +V+A+DRD  AV   +E + 
Sbjct: 12  HRPVMLAESMEWLDVRPGQWYVDANLGGGGHTREILARGGSVVAIDRDKGAVLAAREHLL 71

Query: 80  D-YKEQFSLFQATFSQLQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
             Y ++  +       +   V  +G  V G++FDLG S++Q +  +RG SF + GPLDMR
Sbjct: 72  PLYPDRLRIIHGNNRNVASLVRQEGQHVSGILFDLGWSTIQGEDPERGLSFTEEGPLDMR 131

Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK-RRQSAPFQTTQDLSSL 194
           +      +A D++   +  +L R+L   G+E  A+ IA A+V+ RR+    +TT  L++ 
Sbjct: 132 LDTEQKETAEDLLESLSESELERVLS-EGDEPLAAPIARALVQARREGRLPRTTTALAAF 190

Query: 195 IQKTVYFSKN---NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA-GGLLIVVSF 250
           +   VY+ K    +R HPATR F ALRI VN E E L + L  A + L A GG LIV+SF
Sbjct: 191 V-SGVYYRKGFRRSRRHPATRVFMALRIRVNREYENLEESLSGARELLSATGGRLIVLSF 249

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HS EDR+VK+ F    G+              A F  + ++ +VP  E+V+ N R+RSA+
Sbjct: 250 HSGEDRIVKRCFRLWVGE------------GEAAF--LFRRSLVPGDEEVSLNPRARSAR 295

Query: 311 LRA 313
           +R 
Sbjct: 296 MRG 298


>gi|86140630|ref|ZP_01059189.1| putative S-adenosyl-methyltransferase [Leeuwenhoekiella blandensis
           MED217]
 gi|85832572|gb|EAQ51021.1| putative S-adenosyl-methyltransferase [Leeuwenhoekiella blandensis
           MED217]
          Length = 298

 Score =  161 bits (408), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 112/306 (36%), Positives = 166/306 (54%), Gaps = 29/306 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76
           H PVLL++ +  L   P  V +D TFG GG+SR   K +G    + A D+D  A+    +
Sbjct: 4   HNPVLLKETVDGLAIKPDGVYVDVTFGGGGHSREILKRLGDQGKLFAFDQDKDALDNALD 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             R     F+L    F   + ++   G   VDG++ D GVSS Q D  +RGFS +    L
Sbjct: 64  DPR-----FTLINENFRFAKRFLRFYGAAKVDGILGDFGVSSHQFDVAERGFSTRFDAKL 118

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+    +SA  VVN+ + +DL R+L   GE + A ++A  +V  R+    +TT+DL 
Sbjct: 119 DMRMNQDDKLSAYHVVNEYSEEDLGRVLLQYGELRSAPKLARTLVSVRKDKAIETTEDLK 178

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
             +Q   Y  K        + +QA+RI VN E+E L + L+  E+ LK GG L ++S+HS
Sbjct: 179 QALQS--YLPKGREHKLLAQIYQAIRIEVNQELEVLKEFLQQTEEMLKPGGRLSLISYHS 236

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT---KKV---VVPTQEDVAFNRRS 306
           LEDRLVK++   R+G       +        +F + T   KKV   +VP++E++  N R+
Sbjct: 237 LEDRLVKRYM--RNG-------LFEGEPEKDIFGNFTVPFKKVGGLIVPSKEEIKQNNRA 287

Query: 307 RSAKLR 312
           RSAKLR
Sbjct: 288 RSAKLR 293


>gi|203284227|ref|YP_002221967.1| S-adenosyl-methyltransferase [Borrelia duttonii Ly]
 gi|263445883|sp|B5RLD2|RSMH_BORDL RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|201083670|gb|ACH93261.1| S-adenosyl-methyltransferase [Borrelia duttonii Ly]
          Length = 297

 Score =  161 bits (407), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 106/313 (33%), Positives = 170/313 (54%), Gaps = 26/313 (8%)

Query: 17  IGD--HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPF 69
           +GD  H+PVLLE VI L+       G V +D T G GG+S++        NVI ++RD  
Sbjct: 1   MGDIFHIPVLLEDVINLVETIYLDDGFVFVDCTLGEGGHSKAVLSKYQNINVIGIERDDV 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQL-QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
            ++  +E++ ++ ++ S     F      Y   +  + ++ DLG+S      G RGFSF 
Sbjct: 61  VLNRAKESLVEFSKRISYSNTWFDDFFCKYSLHRRFNFILADLGISMFHYKVGGRGFSFL 120

Query: 129 KSGPLDMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           +   LDMR+  S  GISA D+VN  + + L  ++  LG E  + RI  AI++ R+    Q
Sbjct: 121 EDEKLDMRLFPSDGGISAYDIVNTFDKEMLENLIYELGGEYYSRRIVKAILEYRKINKIQ 180

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T+++L  +I K  Y +   +I+PAT++FQALRI+VN+E++ L + L      L   G+L 
Sbjct: 181 TSRELQRIICKA-YPNVKFKINPATKTFQALRIYVNDELDRLKRSLPLWIANLSKNGILA 239

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           +++FHSLED++VK+FF   +     +               +TKK +  + ++  +N  S
Sbjct: 240 IITFHSLEDKIVKEFFKGLTKDQYCI---------------LTKKPITSSFKEKQYNNAS 284

Query: 307 RSAKLRAGMRTVE 319
           RSAKLRA  +  E
Sbjct: 285 RSAKLRAVKKLYE 297


>gi|219684724|ref|ZP_03539667.1| S-adenosyl-methyltransferase MraW [Borrelia garinii PBr]
 gi|219672086|gb|EED29140.1| S-adenosyl-methyltransferase MraW [Borrelia garinii PBr]
          Length = 296

 Score =  161 bits (407), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 100/302 (33%), Positives = 170/302 (56%), Gaps = 24/302 (7%)

Query: 20  HVPVLLEKVIALLNPAPGK---VILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           H PVLL+ +  L+   P K   + +D+T G G ++++  +     +++ ++RDP  +   
Sbjct: 7   HFPVLLDAICKLIEDLPVKSDLIYIDSTLGEGAHAKAILEKYDFLSLVGIERDPQILERA 66

Query: 75  QETMRDYKEQFSLFQATFSQL-QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           ++ +  +KE+ + F   F     +Y  +   + ++ DLG+S        +GFSF +  PL
Sbjct: 67  KQFLLVFKERITYFNDWFDNFFVNYPLNVKANFILVDLGISMFHYKGSKKGFSFLEDEPL 126

Query: 134 DMRMSCSGISAS--DVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           DMR+  S  S S  ++VN  +  DL  ++  L  E  + RI+ AIV+ R+    +TT++L
Sbjct: 127 DMRLCSSSCSISAAEIVNTFSKYDLESLIYDLSNEHYSRRISKAIVEYRKIKKIETTKEL 186

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            ++I K   FSK  +I+PAT++FQALRI+VN+E+  L + L    + L   G+L +++FH
Sbjct: 187 QAVINKVYPFSKA-KINPATKTFQALRIYVNDELARLKRSLPLWIENLAKDGILAIITFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           S+EDR+VK FF S S  + A                I+KK ++P+ +++  N+ SRSAKL
Sbjct: 246 SIEDRIVKDFFRSLSCDLYA---------------KISKKPIIPSFDEIKKNKPSRSAKL 290

Query: 312 RA 313
           RA
Sbjct: 291 RA 292


>gi|213961666|ref|ZP_03389932.1| S-adenosyl-methyltransferase MraW [Capnocytophaga sputigena Capno]
 gi|213955455|gb|EEB66771.1| S-adenosyl-methyltransferase MraW [Capnocytophaga sputigena Capno]
          Length = 304

 Score =  161 bits (407), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 109/304 (35%), Positives = 160/304 (52%), Gaps = 17/304 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+PVLL++ +  L   P    +D TFG GG+SR   K   N   + A D+D  A +    
Sbjct: 8   HIPVLLQQSVEGLAIKPNGTYVDVTFGGGGHSREILKHLGNEGRLFAFDQDTDAAANAIA 67

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             R     F+L Q  F  L+ Y+   GV   DGV+ D GVSS Q D  +RGFS +  G L
Sbjct: 68  DDR-----FTLIQQNFKYLRQYLRFYGVTQVDGVLGDFGVSSHQFDVAERGFSTRFEGTL 122

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+ +  +SA ++VN+ + +DL+R+    GE K A  IA AI+  R   P Q   +L 
Sbjct: 123 DMRMNQNATVSAKEIVNEYDEEDLSRLFFNYGELKNAKAIARAIINYRAQKPIQLGSELQ 182

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
             ++  +   K N++    + +QA+RI VN E+E L   L      +K GG + ++S+HS
Sbjct: 183 EAVKSFLPKFKENKV--LAQIYQAIRIEVNGEMEALESFLLQLPDVVKLGGRISLISYHS 240

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR VK+F   R G++               F+ +   ++ PT  ++A N R+RSAKLR
Sbjct: 241 LEDRAVKRFI--RDGQLEGTPEKDWFGNVSVPFKKVG-GLITPTDSEIAMNNRARSAKLR 297

Query: 313 AGMR 316
              R
Sbjct: 298 IAER 301


>gi|296273435|ref|YP_003656066.1| S-adenosyl-methyltransferase MraW [Arcobacter nitrofigilis DSM
           7299]
 gi|296097609|gb|ADG93559.1| S-adenosyl-methyltransferase MraW [Arcobacter nitrofigilis DSM
           7299]
          Length = 300

 Score =  161 bits (407), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 101/299 (33%), Positives = 161/299 (53%), Gaps = 12/299 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           H+PVL ++ + +        I+D T G  G+S    K  SNV  I  D+D  A+   ++ 
Sbjct: 5   HIPVLYKETLGVFENIDSGYIIDCTLGYAGHSEGLLKQNSNVKLICNDQDNEALEFSKKR 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
           +  +  + +  +  F  + +   +  + G++ D+GVSS+Q+D  DRGF F  S  LDMRM
Sbjct: 65  LEPFLNRATFNKGNFETVLNSFKEYDIRGILADIGVSSLQLDKEDRGFGFD-SESLDMRM 123

Query: 138 SCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
           +    + AS VVN  +  +L R+    GE K+  ++A  IV  R   PF + ++LS+ I 
Sbjct: 124 NQEQSLDASVVVNTYSQSELERVFKECGEVKEYKKVASLIVNNR---PFTSAKELSTFIA 180

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
           K ++  K   +H AT  FQ +RI VN+E+  L +   S E+      L+ ++SFHSLEDR
Sbjct: 181 KNMHKGK---LHAATLPFQGIRIEVNDELGVLERLFDSIEELKPKNCLIAIISFHSLEDR 237

Query: 257 LVKKFFASRSGKVMAVRHMIPSNA--HPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           +VK +F   S   +    ++        A+ + ITKK ++PT E++  N RSRS+KLR 
Sbjct: 238 IVKNYFKKWSKNCICPSDVMRCTCGNDNALGKIITKKPIIPTNEEIKVNPRSRSSKLRV 296


>gi|315639624|ref|ZP_07894764.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Enterococcus italicus DSM 15952]
 gi|315484585|gb|EFU75041.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Enterococcus italicus DSM 15952]
          Length = 318

 Score =  160 bits (406), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 104/305 (34%), Positives = 170/305 (55%), Gaps = 13/305 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQE 76
           H  VL ++ +  L   P  + +D T G  G+S     ++G +  + A D+D  A+   ++
Sbjct: 5   HYTVLKKETVEGLAIKPDGIYVDCTLGGAGHSEYLLSQLGPDGHLYAFDQDQKALDFAKQ 64

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            ++ +  K Q +  ++ F +L+  + +     VDG+++DLGVSS Q+D  +RGFS+ +  
Sbjct: 65  RLQSFVDKGQVTFIKSNFRELKSKLAELDVMKVDGILYDLGVSSPQLDEAERGFSYHQDA 124

Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  S   SA D+VN  +  +L +I    GEEK + +IA  I + R + P +TT +
Sbjct: 125 PLDMRMDQSASFSAHDLVNTYSYNELVKIFFRYGEEKFSKQIAREIERVRANQPIETTSE 184

Query: 191 LSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I+  +   ++    HPA R FQA+RI VN+E+  + + L  A + L   G + V++
Sbjct: 185 LVEIIKTAIPAPARRKGGHPAKRIFQAIRIAVNDELGAVEESLEQAIELLAIHGRISVIT 244

Query: 250 FHSLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           FHSLEDRLVK  F   S+  ++     +IP    P +   I +K +  ++ ++  N RSR
Sbjct: 245 FHSLEDRLVKNMFKEYSQVKELPPGLPVIPDEYQP-MLTVINRKPITASELELEENNRSR 303

Query: 308 SAKLR 312
           SAKLR
Sbjct: 304 SAKLR 308


>gi|124024959|ref|YP_001014075.1| S-adenosylmethionine-dependent methyltransferase [Prochlorococcus
           marinus str. NATL1A]
 gi|262824926|sp|A2C000|RSMH_PROM1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|123960027|gb|ABM74810.1| Predicted S-adenosylmethionine-dependent methyltransferase
           [Prochlorococcus marinus str. NATL1A]
          Length = 304

 Score =  160 bits (406), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 112/308 (36%), Positives = 167/308 (54%), Gaps = 38/308 (12%)

Query: 19  DHVPVLLEKVIALLNPAPGKV-----ILDATFGAGGYSRSFCKM--GSNVIALDRDPFAV 71
           +HVPV+ +++I  L   P ++     I+DAT G GG+S    +   G  +I LD+DP A 
Sbjct: 13  NHVPVMGKEIIQSLKELPSELTKQGLIIDATIGGGGHSAQILENFPGIKIIGLDQDPMAR 72

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
               + +  +  +  +    F+   D+  D+    V+ DLGVSS Q+D   RGFSF+ +G
Sbjct: 73  EAASKKLIKFGTRIKIISTNFA---DFSLDEQAICVLADLGVSSHQLDEPSRGFSFRLNG 129

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTTQ 189
           P+DMRM+   G SA++++   + ++L  ++  LGEEK++ RIA  I     ++ P+  TQ
Sbjct: 130 PIDMRMNPKEGSSAAELIETLSEQNLADLIYELGEEKRSRRIARKIKNDLAENGPYSGTQ 189

Query: 190 DLSSLIQ-----KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           DLS  I      K  Y     RIHP+TR+FQALRI VNNE+  L   L  A   L   GL
Sbjct: 190 DLSYAIAGCFPPKQRY----GRIHPSTRTFQALRIAVNNELGSLESLLLKAPNWLLENGL 245

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
            +V+SFHSLEDR VK  F + +                   + ++KK +  + E++  N 
Sbjct: 246 FMVMSFHSLEDRRVKSSFKTDN-----------------RLKVLSKKPIRASPEEIELNP 288

Query: 305 RSRSAKLR 312
           RS+SAKLR
Sbjct: 289 RSKSAKLR 296


>gi|298207891|ref|YP_003716070.1| S-adenosyl-methyltransferase mraW [Croceibacter atlanticus
           HTCC2559]
 gi|83850532|gb|EAP88400.1| S-adenosyl-methyltransferase mraW [Croceibacter atlanticus
           HTCC2559]
          Length = 298

 Score =  160 bits (406), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 109/304 (35%), Positives = 164/304 (53%), Gaps = 17/304 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQE 76
           H PVLL + +  LN  P  V +D TFG GG+S+    ++G N  + A D+D  A+    E
Sbjct: 4   HNPVLLHETVDGLNIKPDGVYVDVTFGGGGHSKEILNRLGPNGKLFAFDQDQDALENALE 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             R     F+L    F   + +V  +G   VDG++ D GVSS Q D  +RGFS +    L
Sbjct: 64  DDR-----FTLIPQNFRYAKRFVRVQGYKTVDGILGDFGVSSHQFDVAERGFSTRFDSRL 118

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+ +  +SA +VVN      L ++L   GE + A ++A AI   R+  P +T++ L 
Sbjct: 119 DMRMNQNDALSAYEVVNTYEEGKLRQVLSQYGELRNAPKLARAIYGARKDTPIETSEHLK 178

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I   +   K +++    + +QA+RI VN E+E L + L+  E  L  GG L ++S+HS
Sbjct: 179 EVINSFLPRGKEHKM--LAQIYQAIRIEVNQELEVLKEFLKQTEDMLTTGGRLSLISYHS 236

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDRLVK++   RSG                 F+ +  K++VP  +++A N R+RSAKLR
Sbjct: 237 LEDRLVKRYI--RSGLFEGEPEKDFYGNIEVPFKKVG-KLIVPNAKEIATNNRARSAKLR 293

Query: 313 AGMR 316
              R
Sbjct: 294 VAER 297


>gi|219685637|ref|ZP_03540452.1| S-adenosyl-methyltransferase MraW [Borrelia garinii Far04]
 gi|219672825|gb|EED29849.1| S-adenosyl-methyltransferase MraW [Borrelia garinii Far04]
          Length = 296

 Score =  160 bits (406), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 100/302 (33%), Positives = 170/302 (56%), Gaps = 24/302 (7%)

Query: 20  HVPVLLEKVIALLNPAPGK---VILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           H PVLL+ +  L+   P K   + +D+T G G ++++  +     +++ ++RDP  +   
Sbjct: 7   HFPVLLDAICKLIEDLPVKSDLIYIDSTLGEGAHAKAILEKYDFLSLVGIERDPQILERA 66

Query: 75  QETMRDYKEQFSLFQATFSQL-QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           ++ +  +KE+ + F   F     +Y  +   + ++ DLG+S        +GFSF +  PL
Sbjct: 67  KQFLLVFKERITYFNDWFDNFFVNYPLNVKANFILVDLGISMFHYKGSKKGFSFLEDEPL 126

Query: 134 DMRMSCSGISAS--DVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           DMR+  S  S S  ++VN  +  DL  ++  L  E  + RI+ AIV+ R+    +TT++L
Sbjct: 127 DMRLCSSSCSISAAEIVNTFSKYDLESLIYDLSNEHYSRRISKAIVEYRKIKKIETTKEL 186

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            ++I K   FSK  +I+PAT++FQALRI+VN+E+  L + L    + L   G+L +++FH
Sbjct: 187 QAVINKVYPFSKA-KINPATKTFQALRIYVNDELARLKRSLPLWIENLAKDGILAIITFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           S+EDR+VK FF S S  + A                I+KK ++P+ +++  N+ SRSAKL
Sbjct: 246 SIEDRIVKDFFRSLSCDLYA---------------RISKKPIIPSFDEIKKNKPSRSAKL 290

Query: 312 RA 313
           RA
Sbjct: 291 RA 292


>gi|297569458|ref|YP_003690802.1| S-adenosyl-methyltransferase MraW [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296925373|gb|ADH86183.1| S-adenosyl-methyltransferase MraW [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 303

 Score =  160 bits (406), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 108/315 (34%), Positives = 163/315 (51%), Gaps = 33/315 (10%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H PV+  +V+  L PA G + +D   G GG++ +  +       +I  D D  A++  + 
Sbjct: 5   HQPVMPAEVLFWLAPAAGGIYVDGNLGLGGHAAAILEQSGPSGRLIGFDWDQEALARARS 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC------GDRGFSF 127
            +  + ++  L    F +L+  + +  +   DG++ DLG+SS+Q+D         RGFSF
Sbjct: 65  NLARFGDRVHLQPCNFIELEATLAELAISRIDGILLDLGLSSLQLDSSGEAAGAGRGFSF 124

Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           ++  PLDMRM     ++A+D++   +  +L  I    GEE+QA RIA  +VK+RQ  P  
Sbjct: 125 RRPEPLDMRMDRRQELTAADLLRDLSAAELADIFYYYGEERQARRIAGWLVKQRQQTPIV 184

Query: 187 TTQDLSSLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           TT  L+ L+   V   F   N IH ATR FQALRI VN E+E L + L  A   L     
Sbjct: 185 TTVQLAELVAAAVPRRFHPRN-IHVATRVFQALRIAVNRELENLEKILAVAPSFLSPKAR 243

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
            +V+SFHSLEDRLVK+ F  R    + +               +T + + P + ++  N 
Sbjct: 244 FVVISFHSLEDRLVKRAF--REDPRLKI---------------LTTRPLQPQEAELQRNP 286

Query: 305 RSRSAKLRAGMRTVE 319
           R+RSAKLR   R  E
Sbjct: 287 RARSAKLRVAERREE 301


>gi|116073986|ref|ZP_01471248.1| methyltransferase [Synechococcus sp. RS9916]
 gi|116069291|gb|EAU75043.1| methyltransferase [Synechococcus sp. RS9916]
          Length = 305

 Score =  160 bits (406), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 111/308 (36%), Positives = 160/308 (51%), Gaps = 31/308 (10%)

Query: 20  HVPVLLEKVIALLNPAPGK-----VILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVS 72
           HVPVL E ++  L  +P       + +DAT G  G+S         +  I LD+DP A S
Sbjct: 14  HVPVLAEPLLEALAASPESPWEKGLFIDATLGGAGHSALLLDRYPQLRLIGLDQDPTARS 73

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             Q  +  Y ++  +    F+   DY P+   D V+ DLGVSS Q+D   RGFSF+  GP
Sbjct: 74  AAQVRLEPYGDRAEIVATNFA---DYQPEAPADLVLADLGVSSPQLDVAARGFSFRLDGP 130

Query: 133 LDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI-VKRRQSAPFQTTQ 189
           LDMRM+    G +A++++ +   + L  ++   GEE+ + RIA  I    +++  +  T 
Sbjct: 131 LDMRMNPQGGGETAAELIERLEEEPLADLIYAYGEERLSRRIARRIKADLKENGGYAGTA 190

Query: 190 DLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           DL+  +       ++  RIHPATR+FQALRI VN+E+  L + L+ A   L  GG+L ++
Sbjct: 191 DLAYAVAGCYPPKARRGRIHPATRTFQALRIAVNDELGVLDRLLQQAPDWLNPGGVLAII 250

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDR VK  F                         IT+K +V  + + A N RSRS
Sbjct: 251 SFHSLEDRRVKTAFLQDD-----------------RLARITRKPLVAAEAEEAANPRSRS 293

Query: 309 AKLRAGMR 316
           AKLR   R
Sbjct: 294 AKLRLARR 301


>gi|51246756|ref|YP_066640.1| hypothetical protein DP2904 [Desulfotalea psychrophila LSv54]
 gi|54036176|sp|Q6AJ47|RSMH_DESPS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|50877793|emb|CAG37633.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54]
          Length = 295

 Score =  160 bits (405), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 107/303 (35%), Positives = 168/303 (55%), Gaps = 29/303 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H+ VLLE+ +  L   PG + +D T G GG++ +  +  +    V+A + D  A+   +E
Sbjct: 7   HISVLLEETMEFLCLQPGGIYVDGTMGLGGHTSAILERTAPDGRVVAFEWDENAIKASRE 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  Y E+ +L +  F+++   + + G+   DG++ D+G+SS+Q+D G RGFSFQ+   L
Sbjct: 67  RLAPYGERLTLVRRNFAEIGVGLTEAGISHIDGLLIDIGLSSLQLDTGTRGFSFQRDDDL 126

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM   G ++A+ ++     + L  +    GEE+QA  IA AIV  R+  P QTT+ L 
Sbjct: 127 DMRMDERGEMTAATIIATCTEEQLADLFYCYGEERQARPIAAAIVAARKLEPIQTTKQLV 186

Query: 193 SLIQKTV---YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            ++ + +   +  K  +IH AT+ FQALRI VN E+E L++ +  A + LK G    ++S
Sbjct: 187 RVVARAIPKRFHPK--KIHVATKVFQALRIAVNTELENLSKIIDDAGEFLKPGSRFCIIS 244

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDR+VK+ F                      F+ IT K V   +E++  N RSRSA
Sbjct: 245 FHSLEDRIVKRKFRENPN-----------------FKVITNKPVKAGEEELDRNYRSRSA 287

Query: 310 KLR 312
            LR
Sbjct: 288 LLR 290


>gi|83595986|gb|ABC25345.1| S-adenosyl-methyltransferase [uncultured marine bacterium Ant29B7]
          Length = 304

 Score =  160 bits (405), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 110/300 (36%), Positives = 160/300 (53%), Gaps = 16/300 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMG--SNVIALDRDPFAVSCGQE 76
           H PVLL+  I  L+  P  + +DATFG GG+SR+   ++G    +   D+DP      + 
Sbjct: 4   HDPVLLDACIQHLHIQPHGIYVDATFGGGGHSRAILDQLGPEGKLFGFDQDP---DTSKN 60

Query: 77  TMRDYKEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
              D  ++F L    F  +   +       VDG++ DLGVSS Q+D G RGFSF++   L
Sbjct: 61  APND--DRFQLLPFNFEHITRILRLHKVTAVDGILADLGVSSHQLDEGSRGFSFRQHAEL 118

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  SG  A + +     + L + L   G+  QA R+A AI++ R +     T+DL 
Sbjct: 119 DMRMNPQSGPGAREWLETVTWEQLAQTLREFGDVHQAGRVATAIIQARDAGQMTWTEDLY 178

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
             +Q      +  ++ PA + FQA+RI VN E+  L   L      LK GG  +V+S+HS
Sbjct: 179 ECLQPMCKGPRGKKL-PA-QVFQAIRIAVNRELAVLDSLLVDGANLLKTGGRYVVMSYHS 236

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR VK+FF     +  A R          +F  IT+K +V +QE++A N R+RSAKLR
Sbjct: 237 LEDRRVKRFFKEGVLEGEAARD--DHGRRYEIFDRITRKPLVASQEEIAINPRARSAKLR 294


>gi|160902330|ref|YP_001567911.1| S-adenosyl-methyltransferase MraW [Petrotoga mobilis SJ95]
 gi|262824808|sp|A9BHH9|RSMH_PETMO RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|160359974|gb|ABX31588.1| S-adenosyl-methyltransferase MraW [Petrotoga mobilis SJ95]
          Length = 286

 Score =  160 bits (405), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 106/300 (35%), Positives = 164/300 (54%), Gaps = 30/300 (10%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETMRD 80
           ++E+V++ +      + +D T G GG+ ++     +N   VI +D D   +   +E ++D
Sbjct: 1   MVEEVLSYMITNKDGIYVDCTAGEGGHIKAILGYTNNKAKVIGVDVDYEVLEIAEERLKD 60

Query: 81  YKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
             +   L ++++  +   +   G   VDG + DLGVS+ Q+   +RGFSF K  PLDMRM
Sbjct: 61  LSDNVVLIKSSYKNIDMVLRGLGIDKVDGFLMDLGVSTFQLKGENRGFSFTKDEPLDMRM 120

Query: 138 SC-SGISASDVVNQANVKDLTRILGILGEEKQ-ASRIAHAIVKRRQSAPFQTTQDLSSLI 195
              S   A+ +VN  + +DL RI+   GEEK+ A  I+ +IVK R   P  TTQ+L   I
Sbjct: 121 DVQSEKDAAYIVNNYSQEDLRRIIFEYGEEKRFAHSISKSIVKNR---PINTTQELVDAI 177

Query: 196 QKTVYFSKNNRIHP--ATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           +K +  S+ +  H   AT++FQALRI VN E++ + + L   E  LK    + V++FHSL
Sbjct: 178 RKGLPASQVHERHRHFATKTFQALRIEVNEELKNIEETLSKFESFLKVKARVAVITFHSL 237

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           EDR+VK FF +                    +  +T K ++PTQE++  N RSRSAKLR 
Sbjct: 238 EDRIVKNFFKNNER-----------------YNFLTPKPILPTQEEIKHNPRSRSAKLRV 280


>gi|269120594|ref|YP_003308771.1| S-adenosyl-methyltransferase MraW [Sebaldella termitidis ATCC
           33386]
 gi|268614472|gb|ACZ08840.1| S-adenosyl-methyltransferase MraW [Sebaldella termitidis ATCC
           33386]
          Length = 308

 Score =  160 bits (405), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 106/305 (34%), Positives = 174/305 (57%), Gaps = 10/305 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H PVL ++VI  +      V LD T G  G+++   +  S    VIA+D+D  A+    +
Sbjct: 4   HKPVLFDEVIENIVTNKEGVYLDCTLGGAGHTQGILENTSEKGVVIAIDQDDDAIEFAGK 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + +YKE+  +F+  F  L   +   G   V G++ D+GVSS Q+D  +RGFS++    L
Sbjct: 64  KLENYKERIKIFKDNFKNLDTVLYMAGYEKVSGILMDIGVSSYQLDDPERGFSYKYEAKL 123

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+ +  ISA +V+N+ + +++  IL   GEE ++ RIA  I + R+    +TT +L+
Sbjct: 124 DMRMNKNAKISAYEVINEFSEQEIADILYKYGEEPKSRRIARKITEARKEKKIETTTELA 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            ++ + +   K+ + HPA R+FQA+R++VN E+E L + L  A + L+  G L+V++FHS
Sbjct: 184 DIVIRAI--GKSMKRHPAKRTFQAVRMYVNQELEVLEEALEKAVELLEDRGRLLVITFHS 241

Query: 253 LEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK  F           ++ I      ++ + ITKK +V  + ++  N R+ SAKL
Sbjct: 242 LEDRIVKNKFREFEKPCKCPPNIPICVCGKESLGKVITKKPIVAGELELNDNSRAHSAKL 301

Query: 312 RAGMR 316
           R   R
Sbjct: 302 RVFER 306


>gi|293603437|ref|ZP_06685862.1| S-adenosyl-methyltransferase MraW [Achromobacter piechaudii ATCC
           43553]
 gi|292818139|gb|EFF77195.1| S-adenosyl-methyltransferase MraW [Achromobacter piechaudii ATCC
           43553]
          Length = 365

 Score =  160 bits (405), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 121/331 (36%), Positives = 179/331 (54%), Gaps = 37/331 (11%)

Query: 19  DHVPVLLEKVI-ALLNPAPGK---------------------VILDATFGAGGYSRSFC- 55
           +H PVLLE  + ALL P  G                      V +D TFG GG+SR    
Sbjct: 4   EHRPVLLEPTVDALLLPDFGGKGAARSHSQIEPDTATRADRGVFVDGTFGRGGHSRELLG 63

Query: 56  KMG--SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFS----QLQDYVPDKGVDGVVF 109
           ++G  + ++  D+DP         +     + ++    F+    +LQ    DK VDGV+ 
Sbjct: 64  RLGKSARLVVFDKDP-EAIAVANALAATDSRVTVVHGGFATMAEELQQLGIDK-VDGVML 121

Query: 110 DLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQ 168
           DLGVSS QID  +RGFSF + GPLDMRM  + G + ++ + QA+V ++  ++   GEE+ 
Sbjct: 122 DLGVSSPQIDDAERGFSFMRDGPLDMRMDTTRGPTVAEWLAQASVDEMREVIADYGEERF 181

Query: 169 ASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEEL 228
           A ++A AI  RR + P  TT +L+  +   V   +  + HPATR+FQALRI++N E+EEL
Sbjct: 182 AFQVAKAIAARRATRPLCTTLELAECVASAVRTREKGQ-HPATRTFQALRIYINRELEEL 240

Query: 229 AQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQ 286
           A+ L +A + L  GG L V+SFHSLEDR+VK+   + +    A   +    S     + +
Sbjct: 241 ARTLAAALELLAPGGRLAVISFHSLEDRMVKQCIVAAARPAAAHARLPLRESEMPQPILR 300

Query: 287 SITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           S+ +  V    ++VA N R+RSA LR   RT
Sbjct: 301 SLGR--VQAEDDEVAGNARARSAVLRVAERT 329


>gi|189219430|ref|YP_001940071.1| SAM methyltransferase involved MraW [Methylacidiphilum infernorum
           V4]
 gi|263456445|sp|B3DVX0|RSMH_METI4 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|189186288|gb|ACD83473.1| SAM methyltransferase involved MraW [Methylacidiphilum infernorum
           V4]
          Length = 316

 Score =  160 bits (405), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 103/313 (32%), Positives = 164/313 (52%), Gaps = 26/313 (8%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQE 76
           +  H+PV+L++ +   +P   +  +D TFG GG++ +    G  V+ALD D  A     E
Sbjct: 8   VESHIPVMLKEFLKHCSPKRDEQWIDGTFGYGGHTTALLDKGCKVLALDTDEDAQKRA-E 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQ-KSGP 132
            +++  E+F  F+  FS++ +     G   VDG++ DLGVS  Q+    RGFSFQ    P
Sbjct: 67  ILKEKGEEFYFFRKNFSEMAEACFQMGWTAVDGILLDLGVSLGQLKDPKRGFSFQFPDAP 126

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM      + + ++N  + + L ++  +    K++ ++A+ IV+ R + P +   D 
Sbjct: 127 LDMRMDRTRERTGAALLNTLSKEQLVQLFSVACNMKESQKLANEIVRFRSTGPIKKVGDF 186

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             ++ +       ++I+ ATR F ALRI VN E+E L + LR   K LK GG + V+SFH
Sbjct: 187 LEIVTRARLL--KSKINAATRPFLALRIAVNEELEHLEKALREGTKLLKGGGRIAVISFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNA--------HPAVFQSITKKVVVPTQEDVAFN 303
           S EDR+VK+F  S         H +P           H  +F    ++V+V  +E    N
Sbjct: 245 SAEDRIVKEFMRS---------HCLPKKGEGVAEEENHREMFFYKVERVLVSLEERKN-N 294

Query: 304 RRSRSAKLRAGMR 316
            RSRSA+LR   +
Sbjct: 295 PRSRSARLRIAWK 307


>gi|262341157|ref|YP_003284012.1| S-adenosyl-methyltransferase MraW [Blattabacterium sp. (Blattella
           germanica) str. Bge]
 gi|262272494|gb|ACY40402.1| S-adenosyl-methyltransferase MraW [Blattabacterium sp. (Blattella
           germanica) str. Bge]
          Length = 301

 Score =  160 bits (405), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 112/305 (36%), Positives = 164/305 (53%), Gaps = 20/305 (6%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAV 71
           H    H PVLL++ I  L      + +DATFG GG+S +  K  +    +IALD+D    
Sbjct: 5   HFYYHHEPVLLKESIENLITDKNGIYVDATFGGGGHSYAILKKLNKRGILIALDQDK--E 62

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQ 128
           S  +  ++D  ++F LF   F  ++D +    ++   G++ DLG+SS+QID   RGFS Q
Sbjct: 63  SIKRNFIKD--KRFHLFHNNFIHIRDILNQNHIEKVSGILVDLGLSSLQIDNPTRGFSNQ 120

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
            +  LDMRM+  S  SA +V+N+ + K+L  I    GE K A +I   I+K+R       
Sbjct: 121 WNCTLDMRMNQESSYSAQNVINECSKKELFHIFYEYGEFKNAKKIVEKILKKRFQKNITN 180

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T DLS+L      F K  R     R FQ++RI VNNEI  L   L  + K +  GG + V
Sbjct: 181 TLDLSNLFFIHGSFKKRKRF--LARLFQSIRIEVNNEINILKDFLLESSKIILPGGRIAV 238

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +S+HS+EDR+ K F          ++ M   N     F+ I KKV+ P+ +++  N RSR
Sbjct: 239 ISYHSIEDRITKYFLKEE----FLIKKM---NFKTLPFRMIHKKVIKPSFQEIIRNPRSR 291

Query: 308 SAKLR 312
           SA+LR
Sbjct: 292 SARLR 296


>gi|254432433|ref|ZP_05046136.1| S-adenosyl-methyltransferase MraW [Cyanobium sp. PCC 7001]
 gi|197626886|gb|EDY39445.1| S-adenosyl-methyltransferase MraW [Cyanobium sp. PCC 7001]
          Length = 317

 Score =  160 bits (405), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 109/315 (34%), Positives = 165/315 (52%), Gaps = 41/315 (13%)

Query: 20  HVPVLLEKVIALLNP--------APGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPF 69
           H PVL + V+A   P        + G +++D T G GG+S    +   G  +I LD+DP 
Sbjct: 24  HQPVLADAVLASFAPVETLLAEHSGGGLLIDCTLGGGGHSALLLEAHPGLRLIGLDQDPS 83

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
           A +   E +  + ++ ++    F+   D+ P +    V+ DLGVSS Q+D   RGFSF+ 
Sbjct: 84  ARTAAAERLAPFGDRVTIVATNFA---DHRPSEPALAVLADLGVSSPQLDVAGRGFSFRA 140

Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF--- 185
            GPLDMRM+  +G +A+ ++++     L  ++   GEE+ + RIA  I   ++  P+   
Sbjct: 141 EGPLDMRMNPEAGETAAALLDRLEEGALADLIYGYGEERLSRRIARRI---KEQGPWNDP 197

Query: 186 ---QTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
              +TT +L+ L+       ++  R+HPATR+FQALRI VN+E+  L + L      L+ 
Sbjct: 198 ARPRTTAELAWLVGGCYPPAARRGRLHPATRTFQALRIAVNDELGVLGRWLEQVPDWLRP 257

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           GGLL V+SFHSLEDRLVK  F                       + +T+K +V   E+  
Sbjct: 258 GGLLGVISFHSLEDRLVKTAFLRDE-----------------RLERVTRKPLVAAAEEAE 300

Query: 302 FNRRSRSAKLRAGMR 316
            N RSRSAK R   R
Sbjct: 301 ANPRSRSAKFRVARR 315


>gi|325473769|gb|EGC76957.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Treponema
           denticola F0402]
          Length = 315

 Score =  160 bits (404), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 108/304 (35%), Positives = 165/304 (54%), Gaps = 14/304 (4%)

Query: 20  HVPVLLEKVIALLNP-APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQE 76
           H  VLLE+ +  L P     + +D T G GG++ +F K     N I +D D       +E
Sbjct: 5   HTSVLLEECLEFLKPDVSDNLFVDGTLGEGGHTEAFLKRYPQLNAIGVDADVSIQERAKE 64

Query: 77  TMRDYKEQFSLFQATFSQ--LQDYVPDKGVDGVVF-DLGVSSMQIDCGDRGFSFQKSGPL 133
            ++ + E+   F   +S    ++Y  D     ++  DLG+S        RGFSF    PL
Sbjct: 65  RLKPFGERIR-FHLGWSDEFFKNYPKDSAPPNLILLDLGISMFHYVKSGRGFSFSSDEPL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMR++    +SA+D+VN  N KDL  ++   GEE+ + +IA  IV++R +A F T ++L+
Sbjct: 124 DMRLNPELRLSAADIVNSYNEKDLADLIFNYGEERYSRKIASRIVEQRAAAAFSTAKELA 183

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             I K V  + ++ +IHPAT++FQALRI VN E++ L + L +A   L   G L +++FH
Sbjct: 184 DCIYKAVPQNYRHGKIHPATKTFQALRIAVNGELDRLPRLLEAAFSVLAPNGRLGLITFH 243

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP---SNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SLEDR+V KF+    GK       +P       P   + +TKK V  + E++  N  SRS
Sbjct: 244 SLEDRIV-KFYFKELGKSCTCPENMPICKCGGRPRA-EVLTKKAVKASDEEIRLNPPSRS 301

Query: 309 AKLR 312
           A+LR
Sbjct: 302 ARLR 305


>gi|330718673|ref|ZP_08313273.1| 16S rRNA m(4)C1402 methyltranserfase [Leuconostoc fallax KCTC 3537]
          Length = 317

 Score =  160 bits (404), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 107/316 (33%), Positives = 167/316 (52%), Gaps = 13/316 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76
           +H  VLL + IALL+  P  + +DAT G GG++    K      + + D+D  A+   + 
Sbjct: 4   EHTTVLLHEAIALLDINPEGIYVDATLGGGGHTGEILKQLTTGKLYSFDQDDTAIHYNKA 63

Query: 77  TMRD--YKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
              D     +  L    F  L   +   G   V+G+V+DLGVSS+Q D G RGFS+    
Sbjct: 64  QYADEITAGKLILVHQNFRNLTHVLHQDGITSVNGIVYDLGVSSVQFDDGQRGFSYNYDA 123

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM     ++A  +VN+    DL R+L   GE++ A  IA  I + R+    +TT +
Sbjct: 124 ELDMRMDQRQALTAKIIVNEWPFNDLLRVLSRYGEDRFAKSIARKIEQYREKQLIETTFE 183

Query: 191 LSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I+  +   ++    HPA R+FQALR+ VN+E+  L   L  A   L   G + V++
Sbjct: 184 LVDIIKDAIPAPARRKGGHPAKRTFQALRVAVNDELGALEDSLTQAIDLLGINGKISVIT 243

Query: 250 FHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           F SLEDRLVK+ F  +    ++ A   ++P       ++   +K ++P+Q+++A N R+ 
Sbjct: 244 FQSLEDRLVKQMFREKVSLPELPAGLPLLPEQIE-VDYRLSNRKPILPSQQEIAHNHRAE 302

Query: 308 SAKLRAGMRTVERSIE 323
           SAKLR G+  +  S E
Sbjct: 303 SAKLR-GIERIHMSDE 317


>gi|242309935|ref|ZP_04809090.1| S-adenosyl-methyltransferase MraW [Helicobacter pullorum MIT
           98-5489]
 gi|239523232|gb|EEQ63098.1| S-adenosyl-methyltransferase MraW [Helicobacter pullorum MIT
           98-5489]
          Length = 311

 Score =  160 bits (404), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 100/306 (32%), Positives = 172/306 (56%), Gaps = 16/306 (5%)

Query: 20  HVPVLLEKVIAL----LNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSC 73
           H+ VL ++V+      L    G +++D T G GG+S +  +      +I +D+D  A++ 
Sbjct: 5   HISVLKQEVLETFENELITKNGGILIDCTLGFGGHSLALLEKYPKLKIIGIDQDNDAIAL 64

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYV--PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
             + + ++K++FS+    FS+    +   ++ + G++ D+GVSSMQ D  +RGFSF+ S 
Sbjct: 65  ATKRLENFKDRFSIKYGKFSETLKTILSQEQNIVGILADIGVSSMQFDNKERGFSFE-SE 123

Query: 132 PLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM      +A D++N  ++ +L RI    GE ++  ++AH I++ R+     + + 
Sbjct: 124 TLDMRMDKTKNFNAKDIINTYSLPELERIFKNFGEIREYKKLAHCIIELRKKEKITSAKM 183

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE-KALKAGGLLIVVS 249
           LS  I +     K+ +IHPAT +FQALRI VNNE+ EL + L+  E   ++ G  L ++S
Sbjct: 184 LSEFIARHF---KHPKIHPATLAFQALRIEVNNELGELERLLQIFETHKMQNGARLCIIS 240

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           FHSLEDR++K +F       +  +   +     +    +++ KK +    +++  N RSR
Sbjct: 241 FHSLEDRIIKTYFKKWENPCICPQEAMLCKCGKNHQKGKNLYKKPLTAKAQEIQENPRSR 300

Query: 308 SAKLRA 313
           SAKLRA
Sbjct: 301 SAKLRA 306


>gi|255037275|ref|YP_003087896.1| S-adenosyl-methyltransferase MraW [Dyadobacter fermentans DSM
           18053]
 gi|254950031|gb|ACT94731.1| S-adenosyl-methyltransferase MraW [Dyadobacter fermentans DSM
           18053]
          Length = 305

 Score =  160 bits (404), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 105/299 (35%), Positives = 163/299 (54%), Gaps = 12/299 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77
           HVPV+L + +  L   P  + +D TFG GG+SR+  +      ++  D+DP A S   E 
Sbjct: 8   HVPVMLSECLEGLQIQPDGIYVDVTFGGGGHSRAILEKLTTGRLLVFDQDPDAASNALEF 67

Query: 78  MRDYKEQFSLFQATFSQLQDYVP-DKG--VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
             D  ++F+   A F  L+ Y+  +K   V+G++ DLGVSS QI+  +RGFS +    LD
Sbjct: 68  KDD--QRFTFIPANFRHLKRYLKLNKAPLVNGILADLGVSSHQINTPERGFSTRFDADLD 125

Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM+ +   +A +V+   +  +L RILG+ GE   A   A AI+  R ++  +T  DL  
Sbjct: 126 MRMNPNIEKTAREVLKTRSAAELQRILGMYGEVTNARTAAEAIIAARYNSQIETVNDLKG 185

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           ++ +     + N+     + FQALRI VN+E+  L + L    + L   G L+V+S+HSL
Sbjct: 186 ILMRYAPKHRENKYF--AQVFQALRIEVNDELAVLEEFLAQVPEVLAPDGRLVVMSYHSL 243

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           EDRLVK +           +    +   P   +S+T+K +  T E++A N R+RSAKLR
Sbjct: 244 EDRLVKNYIQKGKFYGEVEKDFYGNEIKP--LKSVTRKPIEATAEEIAVNPRARSAKLR 300


>gi|86134334|ref|ZP_01052916.1| MraW methylase family [Polaribacter sp. MED152]
 gi|85821197|gb|EAQ42344.1| MraW methylase family [Polaribacter sp. MED152]
          Length = 298

 Score =  160 bits (404), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 107/301 (35%), Positives = 167/301 (55%), Gaps = 19/301 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN     + +D TFG GG+S+   K +G N  + A D+DP A++   +
Sbjct: 4   HNAVLLQESVDGLNIKEDGIYVDVTFGGGGHSKEILKRLGKNGRLFAFDQDPDAINNAID 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                 E+F L    F  +  ++     K VDG++ DLGVSS Q D  +RGFS +  G L
Sbjct: 64  D-----ERFVLIPENFRYISRFLRFHRVKKVDGILADLGVSSHQFDEAERGFSIRFDGDL 118

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  S ISA +++N  + + L  IL + GE + + ++A  IV  R+++P +T+  L 
Sbjct: 119 DMRMNQKSKISAKEIINNYSEEKLAEILFLYGELRNSRKLARTIVHERKNSPIETSFQLK 178

Query: 193 SLIQKTVYFSKNNRIHPA-TRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +++    F  N R H    + FQA+RI VN E+E L + L+     L   G L V+S+H
Sbjct: 179 EVLKA---FLPNAREHKILAQIFQAIRIEVNEELEVLKEFLQQVPNLLNDEGRLSVISYH 235

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDRLVK+F  +   +    + +  ++  P        K++VP +E++  N R+RSAKL
Sbjct: 236 SLEDRLVKRFIRTGLFEGEPEKDVFGNSNEPL---KKVGKLIVPPKEEIKINNRARSAKL 292

Query: 312 R 312
           R
Sbjct: 293 R 293


>gi|224536607|ref|ZP_03677146.1| hypothetical protein BACCELL_01482 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521698|gb|EEF90803.1| hypothetical protein BACCELL_01482 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 306

 Score =  160 bits (404), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 104/300 (34%), Positives = 161/300 (53%), Gaps = 16/300 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HVPVLL+  +  +N  P    +D TFG GG+SR        G  ++  D+D  A    ++
Sbjct: 8   HVPVLLKPSVDGMNIRPDGTYVDVTFGGGGHSREILSRLGDGGRLLGFDQDEDA----EQ 63

Query: 77  TMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + D    F   ++ F  L +   Y   + VD ++ DLGVSS   D  +RGFSF+  G L
Sbjct: 64  NIVD-NPHFIFVRSNFRYLHNFLRYHDIEEVDAILADLGVSSHHFDDSERGFSFRFDGAL 122

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  +G +A+D++N  + + L  I  + GE K + ++A  +VK R      T  +  
Sbjct: 123 DMRMNKRAGDTAADIINTYDEERLADIFYLYGELKNSRKLASVLVKARAGQKITTIGEFL 182

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I+    F +        + FQALRI VN E+E L + L +A +ALK GG L+V+++HS
Sbjct: 183 EIIKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLYAATEALKPGGRLVVITYHS 240

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK    + + +    +    +   P  F+ +  KV+VP + ++  N RSRSAKLR
Sbjct: 241 LEDRMVKNMMKTGNVEGKMEKDFFGNVQTP--FRLVNNKVIVPDEAEIERNPRSRSAKLR 298


>gi|88811846|ref|ZP_01127099.1| S-adenosyl-methyltransferase [Nitrococcus mobilis Nb-231]
 gi|88790730|gb|EAR21844.1| S-adenosyl-methyltransferase [Nitrococcus mobilis Nb-231]
          Length = 303

 Score =  160 bits (404), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 113/301 (37%), Positives = 159/301 (52%), Gaps = 15/301 (4%)

Query: 23  VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMR 79
           +LLE  I  L      V +D TFG GG++ +  K    G  +  +D+DP A+S  Q+   
Sbjct: 1   MLLEAAIDALRIQANGVYVDGTFGCGGHAAAILKRLATGGRLGLIDKDPSAISRAQQKFA 60

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGV----DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
                F +   ++++L       GV    DGV+ DLG SS Q+D   RGFSF + GPLDM
Sbjct: 61  ADARCF-IHHGSYAELGVLADTCGVRGRIDGVLLDLGASSPQLDEARRGFSFLRDGPLDM 119

Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM  S G+SA+  +    + ++  ++   GEE+ A RIA AI   RQ+     T    + 
Sbjct: 120 RMDPSKGVSAAAWLADTPLSEIESVIRRYGEERYARRIAQAIDASRQAGRLPQTTGALAA 179

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           +       +    HPATRSFQA+RI +N+E+EEL   L      L  GG L+V+SFHSLE
Sbjct: 180 LIAAAVPRREVGKHPATRSFQAIRIAINDELEELRCFLAGICDLLCPGGRLVVISFHSLE 239

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAH---PAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           DRLVK+F    S ++  +   IP  AH   P + +    K V P  E++  N R+RSA L
Sbjct: 240 DRLVKRFMRDHS-RIGDLPPGIPIVAHSMRPRLRR--PAKPVRPGAEEIRVNPRARSAVL 296

Query: 312 R 312
           R
Sbjct: 297 R 297


>gi|318040652|ref|ZP_07972608.1| 16S rRNA m(4)C1402 methyltranserfase [Synechococcus sp. CB0101]
          Length = 309

 Score =  159 bits (403), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 116/315 (36%), Positives = 167/315 (53%), Gaps = 34/315 (10%)

Query: 19  DHVPVLLEKVIA-------LLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPF 69
           DHVPVL E V+A       LL+     V++D T G GG+S    +    +  I LD+DP 
Sbjct: 14  DHVPVLAEPVLAGFAELEGLLDQRGEGVLIDCTLGGGGHSALLLEAHPRLRLIGLDQDPT 73

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
           A +   + +  + ++  +    F+    Y P + V  V+ DLGVSS Q+D  +RGFSF+ 
Sbjct: 74  ARAAAAQRLAPFGDRVEIVATNFAT---YTPAEPVVAVLADLGVSSPQLDVAERGFSFRL 130

Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQT 187
            GPLDMRM+  +G +A+ ++++ +  +L  ++   GEE+ + RIA  I     +   +  
Sbjct: 131 DGPLDMRMNPDAGETAAALIDRLDETELADLIYAYGEERLSRRIARRIKHDLAEQGAYGG 190

Query: 188 TQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T  L+  +       ++  RIHPATR+FQALRI VN+E+  L + L SA   L  GGL  
Sbjct: 191 TAALAYAVAGCYPPKARRGRIHPATRTFQALRIAVNDELGVLDRLLSSAPDWLVPGGLFG 250

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+SFHSLEDR VK  F S                     Q IT+K V+ T E+   N RS
Sbjct: 251 VISFHSLEDRRVKTAFVSDE-----------------RLQRITRKAVMATTEEEERNPRS 293

Query: 307 RSAKLRAGMR--TVE 319
           RSA+LR   R  T+E
Sbjct: 294 RSARLRLAHRRCTIE 308


>gi|72383375|ref|YP_292730.1| S-adenosyl-methyltransferase MraW [Prochlorococcus marinus str.
           NATL2A]
 gi|88909209|sp|Q46HK1|RSMH_PROMT RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|72003225|gb|AAZ59027.1| bacterial methyltransferase [Prochlorococcus marinus str. NATL2A]
          Length = 304

 Score =  159 bits (403), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 110/308 (35%), Positives = 167/308 (54%), Gaps = 38/308 (12%)

Query: 19  DHVPVLLEKVIALLNPAPGKV-----ILDATFGAGGYSRSFCKM--GSNVIALDRDPFAV 71
           +H+PV+ +++I  L   P ++     I+DAT G GG+S    +   G  +I LD+DP A+
Sbjct: 13  NHIPVMGKEIIRSLKELPSELTKKGLIIDATIGGGGHSAQILENFPGIKIIGLDQDPMAI 72

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
               + +  +  +  +    F+   D+   +    V+ DLGVSS Q+D   RGFSF+ +G
Sbjct: 73  KAASKKLIKFGTRIEIISTNFA---DFSHHEQAICVLADLGVSSHQLDEPSRGFSFRLNG 129

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTTQ 189
           P+DMRM+   G SA++++   + ++L  ++  LGEEK++ RIA  I     ++ P+  TQ
Sbjct: 130 PIDMRMNPKEGSSAAELIETLSEQNLADLIYELGEEKRSRRIARKIKNDLAENGPYSGTQ 189

Query: 190 DLSSLIQ-----KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           DLS  I      K  Y     RIHP+TR+FQALRI VNNE+  L   L  A   L   GL
Sbjct: 190 DLSYAIAGCFPPKQRY----GRIHPSTRTFQALRIAVNNELGSLESLLLKAPNWLLENGL 245

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
            +V+SFHSLEDR VK  F + +                   + ++KK +  + E++  N 
Sbjct: 246 FMVMSFHSLEDRRVKSSFKTDN-----------------RLKVLSKKPIRASPEEIELNP 288

Query: 305 RSRSAKLR 312
           RS+SAKLR
Sbjct: 289 RSKSAKLR 296


>gi|330997819|ref|ZP_08321654.1| S-adenosyl-methyltransferase MraW [Paraprevotella xylaniphila YIT
           11841]
 gi|329569707|gb|EGG51472.1| S-adenosyl-methyltransferase MraW [Paraprevotella xylaniphila YIT
           11841]
          Length = 302

 Score =  159 bits (403), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 106/304 (34%), Positives = 166/304 (54%), Gaps = 24/304 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPFA----VS 72
           HVPVLL++ +  L   P  V  D TFG GG+SR+         ++ + D+D  A    V+
Sbjct: 7   HVPVLLKECVDGLVVNPAGVYADVTFGGGGHSRAIVSRLDTAGHLYSFDQDEDAEANIVA 66

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQK 129
            G+         F+  ++ F  L++++   GV   DG++ DLGVSS   D  +RGFSF+ 
Sbjct: 67  DGR---------FTFVRSNFRYLKNWMRYYGVGELDGLLADLGVSSHHFDDAERGFSFRF 117

Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            G LDMRM+    ++A+DV+N    + L  I  + GE K A ++A  +VK R     +TT
Sbjct: 118 DGRLDMRMNQRAQLTAADVLNDYAEERLADIFYLYGELKNARKLASWVVKARMHRRIETT 177

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           ++   +++    F ++       + FQALRI VN E++ L + L +A + L+ GG L+V+
Sbjct: 178 EEFMEVVKPL--FERDREKKELAKVFQALRIEVNQEMDALKEMLTAAVELLRPGGRLVVL 235

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           ++HSLEDR+VK     ++G V   R            +++  KV+VP +E+   N RSRS
Sbjct: 236 TYHSLEDRMVKNLV--KTGNVEGKRIQDFYGNVDCPLRAVHNKVIVPGEEEQRANPRSRS 293

Query: 309 AKLR 312
           AKLR
Sbjct: 294 AKLR 297


>gi|189464532|ref|ZP_03013317.1| hypothetical protein BACINT_00874 [Bacteroides intestinalis DSM
           17393]
 gi|189438322|gb|EDV07307.1| hypothetical protein BACINT_00874 [Bacteroides intestinalis DSM
           17393]
          Length = 304

 Score =  159 bits (403), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 105/300 (35%), Positives = 159/300 (53%), Gaps = 16/300 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HVPVLL   +  +N  P    +D TFG GG+SR        G  ++  D+D  A    + 
Sbjct: 9   HVPVLLMPSVDGMNIRPDGTYIDVTFGGGGHSREILSRLGDGGRLLGFDQDEDA----ER 64

Query: 77  TMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + D    F+  ++ F  L +   Y   + VD ++ DLGVSS   D  +RGFSF+  G L
Sbjct: 65  NIVD-NPHFTFVRSNFRYLHNFLRYHNIEEVDSILADLGVSSHHFDDSERGFSFRFDGAL 123

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  +G +A+D++N  + + L  I  + GE K + ++A  IVK R      T  +  
Sbjct: 124 DMRMNKRAGDTAADIINNYDEERLADIFYLYGELKNSRKLASVIVKARAGQKITTIGEFL 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I+    F +        + FQALRI VN E+E L + L +A +ALK GG L+V+++HS
Sbjct: 184 EVIKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLYAATEALKPGGRLVVITYHS 241

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK    + + +    +    +   P  F+ +  KV+VP   ++  N RSRSAKLR
Sbjct: 242 LEDRMVKNIMKTGNVEGKMEKDFFGNVQTP--FRLVNNKVIVPDDAEIERNPRSRSAKLR 299


>gi|116626359|ref|YP_828515.1| S-adenosyl-methyltransferase MraW [Candidatus Solibacter usitatus
           Ellin6076]
 gi|122251651|sp|Q01Q40|RSMH_SOLUE RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|116229521|gb|ABJ88230.1| S-adenosyl-methyltransferase MraW [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 286

 Score =  159 bits (403), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 114/300 (38%), Positives = 165/300 (55%), Gaps = 25/300 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77
           HVPV+  + I LL   P  V LDAT G GG+S    +      VIA DRD  ++   +  
Sbjct: 2   HVPVMPAEAIELLAIRPEGVYLDATAGLGGHSGLIARQLTTGTVIANDRDTRSLEMARAN 61

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
             ++ ++      +F  L D V   G   VDG++ DLGVS  Q+   DRGFSF   GPLD
Sbjct: 62  TAEWSDRMCFHYGSFGSLSDAVSQAGFEKVDGLLADLGVSRYQLTAPDRGFSFMADGPLD 121

Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM  S   +A+D+VN  + K L  ++  +GEE++A RIA AIV+   + P ++T  L+ 
Sbjct: 122 MRMDASIQTTAADLVNHTDEKTLADLIYQMGEERRARRIARAIVR---ARPLRSTLHLAD 178

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           ++++ V   +  R+HPAT++F ALR+ VN+E  EL + L  A   LK+GG ++V+SF S 
Sbjct: 179 VVERAV--PRTGRLHPATKTFMALRMAVNDEPGELRRLLEIAPGLLKSGGRMVVISFMSS 236

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           +DR+VK+ F        A                +TK  + P+ E+   N  SRSAKLRA
Sbjct: 237 DDRMVKEKFKELGQSKQAT--------------ILTKHPLQPSDEESFNNPASRSAKLRA 282


>gi|325299150|ref|YP_004259067.1| Ribosomal RNA small subunit methyltransferase H [Bacteroides
           salanitronis DSM 18170]
 gi|324318703|gb|ADY36594.1| Ribosomal RNA small subunit methyltransferase H [Bacteroides
           salanitronis DSM 18170]
          Length = 305

 Score =  159 bits (403), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 105/300 (35%), Positives = 158/300 (52%), Gaps = 17/300 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQE 76
           H+PVLL + +  +N     + +D T G GG+SR   +    GS +   D+D  A      
Sbjct: 9   HIPVLLHESVDGMNLHENGIYVDVTLGGGGHSREILRRMDKGSRLFGFDQDEDAERNAPA 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             R     F+  ++ F  L++++   GV   D ++ DLGVSS  +D   RGFSF+   PL
Sbjct: 69  DTR-----FTFVRSNFRYLRNFLRYYGVEQADAILADLGVSSHHLDDASRGFSFRFDAPL 123

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  + ++A+DVVN  +   L  I  + GE K + R+A  +VK R   P   T DL 
Sbjct: 124 DMRMNKRAKLTAADVVNTYDESRLADIFYLYGEMKNSRRLASDLVKARAQKPVALTGDLI 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +++   Y  K        + FQALRI VN+E++ L + L +A   LK GG L V+++HS
Sbjct: 184 GIVKP--YCPKEREKKELAKIFQALRIEVNHEMDALKEMLEAAVDVLKPGGRLAVITYHS 241

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK    + + +  A +    +   P        K +VP +E++  N RSRSAKLR
Sbjct: 242 LEDRMVKNMMKAGNVEGKAEQDFYGNFRSPL---RTVGKPIVPGEEEIGRNPRSRSAKLR 298


>gi|289209369|ref|YP_003461435.1| S-adenosyl-methyltransferase MraW [Thioalkalivibrio sp. K90mix]
 gi|288945000|gb|ADC72699.1| S-adenosyl-methyltransferase MraW [Thioalkalivibrio sp. K90mix]
          Length = 309

 Score =  159 bits (403), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 119/306 (38%), Positives = 166/306 (54%), Gaps = 11/306 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQE 76
           H+PVL + V+  L        +D TFG GG+SR+       G +++A+DRDP A +    
Sbjct: 7   HIPVLRDAVLEGLAVRADGFYVDGTFGRGGHSRAILDRLGAGGSLLAMDRDPEAAAAASS 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYV----PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              D +  F      FS + D +    PD+  DGV  DLGVSS Q+D  +RGFSFQ  GP
Sbjct: 67  FADDPR--FVFEPGPFSTMADTLRRRFPDRAPDGVFLDLGVSSPQLDTPERGFSFQHDGP 124

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G SA+D + +A   ++  ++   GEE+ + R+A AIV  R  AP   T  L
Sbjct: 125 LDMRMDPTQGESAADWLARAEQDEIADVIYHYGEERHSRRVARAIVAARADAPITRTAQL 184

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++++ V   +  + HPATR+FQALRI VN E+EEL Q L +  +AL  G  ++V+SFH
Sbjct: 185 AEIVRRAVPGREPGK-HPATRTFQALRIHVNRELEELEQWLETIPEALHTGARMVVISFH 243

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+VK+            R +      P        K V    E+   N R+RSA L
Sbjct: 244 SLEDRMVKQALRGPRPDTRLPRGLPVMPETPERPWRPIGKPVRADAEEQRRNPRARSAVL 303

Query: 312 RAGMRT 317
           R G RT
Sbjct: 304 RVGERT 309


>gi|125624479|ref|YP_001032962.1| S-adenosyl-methyltransferase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|263458159|sp|A2RLT4|RSMH_LACLM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263460329|sp|Q02ZY9|RSMH_LACLS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|124493287|emb|CAL98255.1| S-adenosyl-methyltransferase [Lactococcus lactis subsp. cremoris
           MG1363]
          Length = 317

 Score =  159 bits (403), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 105/307 (34%), Positives = 169/307 (55%), Gaps = 11/307 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGS-NVIALDRDPFAVSCGQET 77
           H  VLL + + +L   P  + +DAT G  G+S     K+ + ++ + D+D  A +  +  
Sbjct: 9   HDTVLLHETVDMLEVKPNGIYVDATLGGAGHSEYLLSKLTTGHLYSFDQDETAHANAKVR 68

Query: 78  MRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + +   +++ +L ++ F  L+  + +     +DG+++DLGVSS Q D   RGFS++K   
Sbjct: 69  LSEQLAEDKVTLIKSNFRNLKSALAELDITKIDGILYDLGVSSPQFDDSQRGFSYKKEAR 128

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S  +SA +VVN    + L RI    GE+K + +IA  I + R+  P +TT +L
Sbjct: 129 LDMRMDQSQTLSAYEVVNDYPYEALVRIFFRYGEDKFSKQIARKIEQSRKIKPIETTIEL 188

Query: 192 SSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           + LI+  +   +   + HPA R FQA+RI VN+E+    + +  A   LK  G + V++F
Sbjct: 189 ADLIKSALPQKELKKKGHPAKRIFQAIRIEVNDELGAAEESIEQAIDLLKVDGRISVITF 248

Query: 251 HSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDRL K  F   S   V     M+P     A  + I +K V+ ++E++ FN R+ SA
Sbjct: 249 HSLEDRLTKSIFKEYSTVNVPKGLPMLPKEME-AKLKLINRKPVLASEEELEFNNRAHSA 307

Query: 310 KLRAGMR 316
           KLR   +
Sbjct: 308 KLRVAQK 314


>gi|113954684|ref|YP_731835.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. CC9311]
 gi|123327560|sp|Q0I6T7|RSMH_SYNS3 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|113882035|gb|ABI46993.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. CC9311]
          Length = 310

 Score =  159 bits (402), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 106/308 (34%), Positives = 165/308 (53%), Gaps = 31/308 (10%)

Query: 20  HVPVLLEKVIALLNPAP-----GKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVS 72
           HVPVL E ++ +L+  P        ++DAT G GG+S+   +   G  ++ LD+DP A +
Sbjct: 14  HVPVLAETLMQVLSEQPPILWQNTAVIDATLGGGGHSKLILERFPGVRLVGLDQDPSARA 73

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                +  + ++  +    F+  +   P + V  V+ DLGVSS Q+D   RGFSF+  GP
Sbjct: 74  AAASRLEPFLDRVQIVPVNFAAFE---PPEPVSLVLADLGVSSPQLDVASRGFSFRLDGP 130

Query: 133 LDMRMS--CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQTTQ 189
           LDMRM+    G +A +++ + +V  L  ++   GEE+ + RIA  I    ++   +  T 
Sbjct: 131 LDMRMNPVAGGETAEEMIARLDVNALADLIYAFGEERLSRRIARRIKADLEAEGAYAGTA 190

Query: 190 DLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L+  +       ++  RIHPATR+FQALRI VN+E+  L + L++A   LK GG+L ++
Sbjct: 191 ALAYAVAGCYPPKARRGRIHPATRTFQALRIAVNDELGVLDRLLQTAPGWLKPGGVLAII 250

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDR VK  F                       + +T+K  + ++++ A N RSRS
Sbjct: 251 SFHSLEDRRVKTAFLQEE-----------------RLERVTRKPFMASEQEQADNPRSRS 293

Query: 309 AKLRAGMR 316
           AKLR   R
Sbjct: 294 AKLRIARR 301


>gi|42526707|ref|NP_971805.1| S-adenosyl-methyltransferase MraW [Treponema denticola ATCC 35405]
 gi|85701364|sp|P62477|RSMH_TREDE RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|41817022|gb|AAS11716.1| S-adenosyl-methyltransferase MraW [Treponema denticola ATCC 35405]
          Length = 315

 Score =  159 bits (402), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 106/306 (34%), Positives = 164/306 (53%), Gaps = 18/306 (5%)

Query: 20  HVPVLLEKVIALLNP-APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQE 76
           H  VLLE+ +  L P A   + +D T G GG++ +F K     N I +D D       +E
Sbjct: 5   HTSVLLEECLEFLKPDASDNLFVDGTLGEGGHTEAFLKRYPQLNAIGVDADVSIQERAKE 64

Query: 77  TMRDYKEQFSLFQATFSQL-----QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            ++ + E+         +      +D+ P    + ++ DLG+S        RGFSF    
Sbjct: 65  RLKPFGERIRFHLGWSDEFFKNYPKDFAPP---NLILLDLGISMFHYVKSGRGFSFSSDE 121

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMR++    +SA+D+VN  N KDL  ++   GEE+ + +IA  IV++R +A F   ++
Sbjct: 122 PLDMRLNPELRLSAADIVNSYNEKDLADLIFNYGEERYSRKIASRIVEQRAAAAFSNAKE 181

Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+  I K V  + ++ +IHPAT++FQALRI VN E++ L + L +A   L   G L +++
Sbjct: 182 LADCIYKAVPQNYRHGKIHPATKTFQALRIAVNGELDRLPRLLEAAFSVLAPNGRLGLIT 241

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIP---SNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           FHSLEDR+V KF+    GK       +P       P   + +TKK V  + E++  N  S
Sbjct: 242 FHSLEDRIV-KFYFKELGKSCTCPENMPICKCGGRPRA-EVLTKKAVKASDEEIRLNPPS 299

Query: 307 RSAKLR 312
           RSA+LR
Sbjct: 300 RSARLR 305


>gi|111115132|ref|YP_709750.1| hypothetical protein BAPKO_0317 [Borrelia afzelii PKo]
 gi|216263935|ref|ZP_03435929.1| S-adenosyl-methyltransferase MraW [Borrelia afzelii ACA-1]
 gi|123145742|sp|Q0SNK4|RSMH_BORAP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|110890406|gb|ABH01574.1| conserved hypothetical protein [Borrelia afzelii PKo]
 gi|215979979|gb|EEC20801.1| S-adenosyl-methyltransferase MraW [Borrelia afzelii ACA-1]
          Length = 296

 Score =  159 bits (402), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 99/302 (32%), Positives = 169/302 (55%), Gaps = 24/302 (7%)

Query: 20  HVPVLLEKVIALLNPAPGK---VILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           H PVLL+ +  L+   P K   + +D+T G G ++++  +     +++ ++RD   +   
Sbjct: 7   HFPVLLDAICKLIEDLPVKSDLIYIDSTLGEGAHAKAILEKYDFLSLVGIERDSQILERA 66

Query: 75  QETMRDYKEQFSLFQATFSQL-QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           ++ +  +K++ + F   F     +Y  +   + ++ DLG+S        +GFSF +  PL
Sbjct: 67  KQFLLIFKDRITYFNDWFDNFFANYPLNVKANFILVDLGISMFHYKDSKKGFSFLEDEPL 126

Query: 134 DMRMSCSGISAS--DVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           DMR+  S  S S  ++VN  +  DL  ++  L  E  + RI+ AIV+ R+    QTT++L
Sbjct: 127 DMRLCSSSCSISAAEIVNTFSKYDLESLIYNLSNEHYSRRISKAIVEYRKIKKIQTTKEL 186

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            S+I K   FSK  +I+PAT++FQALRI+VN+E+  L + L    + L   G+L +++FH
Sbjct: 187 QSIINKVYPFSKV-KINPATKTFQALRIYVNDELARLKRSLPLWVENLAKDGILAIITFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           S+EDR+VK FF S S                 ++  I+KK ++P+ +++  N+ SRSAKL
Sbjct: 246 SIEDRIVKDFFRSLSCD---------------LYVKISKKPIIPSSDEIKKNKPSRSAKL 290

Query: 312 RA 313
           RA
Sbjct: 291 RA 292


>gi|86132600|ref|ZP_01051193.1| S-adenosyl-methyltransferase [Dokdonia donghaensis MED134]
 gi|85816842|gb|EAQ38027.1| S-adenosyl-methyltransferase [Dokdonia donghaensis MED134]
          Length = 298

 Score =  159 bits (402), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 107/305 (35%), Positives = 166/305 (54%), Gaps = 27/305 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H PVLL++ +  L+  P  V +D TFG GG+SR    ++G N  +   D+DP A     +
Sbjct: 4   HNPVLLKETVDGLDIKPDGVYVDVTFGGGGHSREILSRLGENGKLYGFDQDPDAAQNVPD 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             R     F L    F  ++ ++     K VDG++ D GVSS Q D  +RGFS +    L
Sbjct: 64  DSR-----FVLIPENFRFIKRFLRFHGHKKVDGILGDFGVSSHQFDVAERGFSTRFESDL 118

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+    +SA +VVN    +DL ++    GE + A ++A AIV  R +AP +T++ L 
Sbjct: 119 DMRMNQKDDLSAYNVVNDYAEEDLRQVFWQYGELRNAPKLASAIVVARGNAPIKTSEQLK 178

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            ++    +  K+       + +QA+RI VN EIE L + L   E+ L+ GG + ++S+HS
Sbjct: 179 KVL--AAFLPKHREHKILAQIYQAIRIEVNQEIEVLKEFLLQTEQLLEPGGRISLISYHS 236

Query: 253 LEDRLVKKF-----FASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           LEDRLVK++     F     K M     +P       F+ +  +++VP++E++  N R+R
Sbjct: 237 LEDRLVKRYIRNGLFEGEPEKDMYGNFEVP-------FKKVG-RLIVPSKEEIKSNNRAR 288

Query: 308 SAKLR 312
           SAKLR
Sbjct: 289 SAKLR 293


>gi|332881743|ref|ZP_08449391.1| S-adenosyl-methyltransferase MraW [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332680382|gb|EGJ53331.1| S-adenosyl-methyltransferase MraW [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 302

 Score =  159 bits (402), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 105/304 (34%), Positives = 165/304 (54%), Gaps = 24/304 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPFA----VS 72
           HVPVLL++ +  L   P  +  D TFG GG+SR+         ++   D+D  A    V+
Sbjct: 7   HVPVLLKECVDGLVVNPAGIYADVTFGGGGHSRAIVSRLDAAGHLYGFDQDADAEANIVA 66

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQK 129
            G+         F+  ++ F  L++++   GV   DG++ DLGVSS   D  +RGFSF+ 
Sbjct: 67  DGR---------FTFVRSNFRYLKNWMRYYGVEQLDGLLADLGVSSHHFDDAERGFSFRF 117

Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            G LDMRM+    ++A+DV+N    + L  I  + GE K A ++A  +VK R     +TT
Sbjct: 118 DGKLDMRMNQRARLTAADVLNDYAEERLADIFYLYGELKNARKLASWVVKARMHRRIETT 177

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           ++   +++    F ++       + FQALRI VN E++ L + L +A + L+ GG L+V+
Sbjct: 178 EEFMEVVKPL--FERDREKKELAKVFQALRIEVNQEMDALKEMLTAAVELLRPGGRLVVL 235

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           ++HSLEDR+VK     ++G V   R            +++  KV+VP +E+   N RSRS
Sbjct: 236 TYHSLEDRMVKNLV--KTGNVEGKRIQDFYGNVDCPLRAVHNKVIVPGEEEQRANPRSRS 293

Query: 309 AKLR 312
           AKLR
Sbjct: 294 AKLR 297


>gi|77414796|ref|ZP_00790918.1| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae 515]
 gi|77159158|gb|EAO70347.1| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae 515]
          Length = 298

 Score =  159 bits (402), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 101/297 (34%), Positives = 164/297 (55%), Gaps = 12/297 (4%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQETMRDYKE--QF 85
           +L+  P  + +DAT G  G+S     ++G +  + A D+D  A+      ++ Y +  Q 
Sbjct: 1   MLDIKPDGIYVDATLGGAGHSEYLLSQLGPDGHLYAFDQDQKAIDNAHIRLKKYVDTGQV 60

Query: 86  SLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-G 141
           +  +  F  L   +   GV   +G+ +DLGVSS Q+D  +RGFS+++  PLDMRM+    
Sbjct: 61  TFIKDNFRNLSSNLKALGVSEINGICYDLGVSSPQLDERERGFSYKQDAPLDMRMNREQS 120

Query: 142 ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYF 201
           ++A DVVN  +  DL RI    GE+K + +IA  I + R   P  TT +L+ +I+ +   
Sbjct: 121 LTAYDVVNTYSYHDLVRIFFKYGEDKFSKQIARKIEQVRAEKPISTTTELAEIIKSSKSA 180

Query: 202 SK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKK 260
            +   + HPA + FQA+RI VN+E+    + ++ A   L   G + V++FHSLEDRL K+
Sbjct: 181 KELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDLLAVDGRISVITFHSLEDRLTKQ 240

Query: 261 FFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
            F   S  +V      IP +  P + + + +K ++P+QE++  N R+ SAKLR   R
Sbjct: 241 LFKEASTVEVPKGLPFIPDDLQPKM-ELVNRKPILPSQEELEANNRAHSAKLRVARR 296


>gi|203287765|ref|YP_002222780.1| S-adenosyl-methyltransferase [Borrelia recurrentis A1]
 gi|263445859|sp|B5RRC5|RSMH_BORRA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|201084985|gb|ACH94559.1| S-adenosyl-methyltransferase [Borrelia recurrentis A1]
          Length = 297

 Score =  159 bits (401), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 105/313 (33%), Positives = 169/313 (53%), Gaps = 26/313 (8%)

Query: 17  IGD--HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPF 69
           +GD  H+PVLLE VI L+       G V +D T G GG+S++        NVI ++RD  
Sbjct: 1   MGDIFHIPVLLEDVINLVETIYLDDGFVFVDCTLGEGGHSKAVLSKYQNINVIGIERDDV 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQL-QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
            ++  +E++ ++ ++ S     F      Y   +  + ++ DLG+S        RGFSF 
Sbjct: 61  VLNRAKESLVEFSKRISYSNTWFDDFFCKYSLHRRFNFILADLGISMFHYKVAGRGFSFL 120

Query: 129 KSGPLDMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           +   LDMR+  S  GISA D+VN  + + L  ++  LG E  + RI  AI++ R+    Q
Sbjct: 121 EDEKLDMRLFPSDGGISAYDIVNTFDKEMLENLIYELGGEYYSRRIVKAILEYRKINKIQ 180

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T+++L  +I K  Y +   +I+PAT++FQALRI+VN+E++ L + L      L   G+L 
Sbjct: 181 TSRELQRIICKA-YPNVKFKINPATKTFQALRIYVNDELDRLKRSLPLWIANLSKNGILA 239

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           +++FHSLED++VK+FF   +     +               +TKK +  + ++  +N  S
Sbjct: 240 IITFHSLEDKIVKEFFKGLTKDKYCI---------------LTKKPITSSFKEKQYNNAS 284

Query: 307 RSAKLRAGMRTVE 319
           RSAKLRA  +  E
Sbjct: 285 RSAKLRAVKKLYE 297


>gi|255322622|ref|ZP_05363766.1| S-adenosyl-methyltransferase MraW [Campylobacter showae RM3277]
 gi|255300183|gb|EET79456.1| S-adenosyl-methyltransferase MraW [Campylobacter showae RM3277]
          Length = 310

 Score =  159 bits (401), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 104/300 (34%), Positives = 164/300 (54%), Gaps = 12/300 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           HVPVLL +V+         VI+D T G GG+S +  +   NV  IA D+D  A+    E 
Sbjct: 5   HVPVLLNEVLQAFEDIKSGVIVDCTLGYGGHSSAILEQNQNVNLIACDQDEEAIKFSSER 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
           ++ + ++  +F++ FS++   V    + G++ D+GVSS+Q+D  +RGF   KS  LDMRM
Sbjct: 65  LKKFGQRAQIFKSKFSEILGKVEQSQIRGILADIGVSSLQLDKNERGFGL-KSENLDMRM 123

Query: 138 SCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
                 SA D+VN  + K+L RI    GE    ++ A  I++ RQS   ++ + L+ +I 
Sbjct: 124 DAQAKFSAYDIVNFYSAKELERIFADYGELPSPAKFAAKIIEARQSGEIKSAERLAQIIG 183

Query: 197 -KTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
            K V    N R +  AT +FQA+RI VNNE+ EL   L+S E +     ++ ++SFHSLE
Sbjct: 184 LKGV----NGRSVSAATLAFQAIRIEVNNELGELQNLLQSIEDSQIDECIVAIISFHSLE 239

Query: 255 DRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           DR+VK  F   +   +     +        A+ + ++KK + P+  ++  N RS  AK+R
Sbjct: 240 DRIVKNKFRQWAQSCICPPQALRCTCGGDNALGKIVSKKAITPSAAEIKANPRSSCAKMR 299


>gi|257453541|ref|ZP_05618831.1| S-adenosyl-methyltransferase MraW [Enhydrobacter aerosaccus SK60]
 gi|257448999|gb|EEV23952.1| S-adenosyl-methyltransferase MraW [Enhydrobacter aerosaccus SK60]
          Length = 319

 Score =  159 bits (401), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 106/288 (36%), Positives = 162/288 (56%), Gaps = 23/288 (7%)

Query: 41  LDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD 97
           +DATFG GG+SR   ++    S ++  D+DP A+   Q  +     +  +   +F++LQD
Sbjct: 42  VDATFGRGGHSRLLLTYLDKDSRLLVFDKDPQAIQTAQ-ALAASDARVIVIHDSFAKLQD 100

Query: 98  YVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANV 153
            +   G   VDG++ DLGVSS Q+D G RGFSF + G +DMRM  + G S +  + + + 
Sbjct: 101 NLQRLGIEQVDGIMADLGVSSPQLDDGSRGFSFMRDGAVDMRMDTTRGESVAQWLKRVDE 160

Query: 154 KDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRS 213
             L  +L   GEE+ + RIA AI   +Q   + +T  L+  I K  + +     HPAT+S
Sbjct: 161 TVLADVLYNYGEERHSRRIARAI---KQMEHYDSTLALAETI-KQAHPNWQKGKHPATQS 216

Query: 214 FQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVR 273
           FQA+RIF+NNE+ ++   L  +  ALK GG L V+SFHSLEDR++K+F    S      +
Sbjct: 217 FQAMRIFINNELGDIDSFLAQSLIALKVGGRLAVISFHSLEDRIIKQFLQKHS------K 270

Query: 274 HMIPSNAH----PAVFQSITK-KVVVPTQEDVAFNRRSRSAKLRAGMR 316
              P +A+    P   + ++K + V P   ++  N R+RSA LR+  R
Sbjct: 271 GQYPEDANLPMPPKRPKLLSKPERVAPLATEIKTNPRARSALLRSATR 318


>gi|262370681|ref|ZP_06064006.1| S-adenosylmethionine-dependent methyltransferase [Acinetobacter
           johnsonii SH046]
 gi|262314481|gb|EEY95523.1| S-adenosylmethionine-dependent methyltransferase [Acinetobacter
           johnsonii SH046]
          Length = 307

 Score =  159 bits (401), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 113/305 (37%), Positives = 162/305 (53%), Gaps = 14/305 (4%)

Query: 20  HVPVLL-EKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQ 75
           H+ VLL E V AL+      + +D TFG GG++R    K+  N  V   D+DP A+    
Sbjct: 3   HISVLLHETVDALVADRNTGIFIDGTFGRGGHTRLLLSKLDENARVYGFDKDPQALETAA 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +     +F +  A+F+ L+  +  +G   VDGV+ DLGVSS Q+D  +RGFSF K GP
Sbjct: 63  -ILEQEDPRFKIIHASFADLKHELEVRGIGLVDGVMADLGVSSPQLDQAERGFSFMKDGP 121

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G +A+  +     + L  I+   GEE+ + RIA AI   + +   +TT  L
Sbjct: 122 LDMRMDNSKGPTAAQWLVNIEEEALANIIFQYGEERYSRRIAKAI---KAAGLIETTAQL 178

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++ K  +       H ATR+FQA+RI +N E+E++   L  A + LK  G L V+SFH
Sbjct: 179 AEIV-KVAHPKWEKNKHAATRTFQAIRIAINKELEDIEVFLPQAVEVLKPNGRLAVISFH 237

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDRL+K+F    S     +   +P    P   +      V  +  +V  N RSRSA L
Sbjct: 238 SLEDRLIKQFIQKESTLEEDMGWGMPQQ-RPDTRRLKKVSRVKASDAEVKANPRSRSAWL 296

Query: 312 RAGMR 316
           R   R
Sbjct: 297 RVAER 301


>gi|224372899|ref|YP_002607271.1| S-adenosyl-methyltransferase MraW [Nautilia profundicola AmH]
 gi|262825192|sp|B9L9G3|RSMH_NAUPA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|223589436|gb|ACM93172.1| S-adenosyl-methyltransferase MraW [Nautilia profundicola AmH]
          Length = 306

 Score =  159 bits (401), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 104/301 (34%), Positives = 167/301 (55%), Gaps = 15/301 (4%)

Query: 20  HVPVLLEKVIALLNPAP-GKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76
           H+PVLL + I L N  P     +D T G GG+S +  +   N+  I +D+D  A+   + 
Sbjct: 8   HIPVLLNETIGLYNDMPENGYFIDCTLGFGGHSEAILEKYPNIKLIGIDQDAEAMHFAKN 67

Query: 77  TMRDYKEQFSLFQATFSQLQDYVP-DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
            +  + ++        S   + +P D  V G++ D+GVSS Q+D  +RGF+F+ S  LDM
Sbjct: 68  RLARFGDRVQFINKRASSALEELPEDLPVSGILADIGVSSYQLDNKERGFTFE-SEELDM 126

Query: 136 RMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM      SA DVVN  + +DL RI+   GE ++  ++  AI+ +R   P ++ ++L+ +
Sbjct: 127 RMDKTQDFSAKDVVNFYSKEDLERIIKNYGECRRFKKVVSAIISKR---PIKSNRELADI 183

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           +       K +      + FQA+RI VNNE+ EL + L++A+K  K G +L +++FHSLE
Sbjct: 184 LGHIGLRDKKD----LAKIFQAIRIEVNNELNELEKILKNAKKLAKNGTILGIITFHSLE 239

Query: 255 DRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           DR+VK  F   S K +     I      +  + + +TKK +V ++E++  N RSRSAKLR
Sbjct: 240 DRIVKNTFKEWSKKCICPPEAIRCECGGNNQLGKILTKKPLVASKEEIKMNPRSRSAKLR 299

Query: 313 A 313
            
Sbjct: 300 G 300


>gi|148926658|ref|ZP_01810339.1| hypothetical protein Cj8486_0712c [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|145845177|gb|EDK22272.1| hypothetical protein Cj8486_0712c [Campylobacter jejuni subsp.
           jejuni CG8486]
          Length = 312

 Score =  158 bits (400), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 106/302 (35%), Positives = 166/302 (54%), Gaps = 13/302 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           H+PVLL +V  +         LD T G GG+S +  K   ++  IA D+D  A+   ++ 
Sbjct: 7   HIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKNHPDLKFIACDQDQQALEFSKKR 66

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
           ++D++ + +  Q+ FS++ + +  K  + G++ D+GVSS Q+D  +RGFS   S  LDMR
Sbjct: 67  LKDFRNRITFMQSNFSEVLEKISHKEELRGILADIGVSSFQLDNNERGFSVN-SDFLDMR 125

Query: 137 MS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M+  S ISA +++N    + LT I    GE   A  IA  I   R   P ++ ++L  +I
Sbjct: 126 MNQNSKISAYEIINTYTKEQLTSIFKDYGELHDAHFIAEKICLERSKNPIKSAKELYQII 185

Query: 196 QKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
            K     +N+R I  AT +FQA+RI VN E++ L   L   E       +L ++SFHSLE
Sbjct: 186 GKG---KQNHRKISKATLAFQAIRIEVNQELKVLKDFLEHLENLKPKNCILAIISFHSLE 242

Query: 255 DRLVKKFFASRSGKVMAVRHMIPS---NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           DR+VK+FF   S   +    ++     N H ++ Q ITKK +  ++E++  N RS  AK+
Sbjct: 243 DRIVKQFFKKWSKNCICNEKIMRCECGNNH-SLGQIITKKAISASKEELLKNSRSSCAKM 301

Query: 312 RA 313
           RA
Sbjct: 302 RA 303


>gi|224531783|ref|ZP_03672415.1| S-adenosyl-methyltransferase MraW [Borrelia valaisiana VS116]
 gi|224511248|gb|EEF81654.1| S-adenosyl-methyltransferase MraW [Borrelia valaisiana VS116]
          Length = 296

 Score =  158 bits (400), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 100/302 (33%), Positives = 169/302 (55%), Gaps = 24/302 (7%)

Query: 20  HVPVLLEKVIALLNPAPGK---VILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           H PVLL+ +  L+   P K   + +D+T G G ++++  +     ++I ++RD   +   
Sbjct: 7   HFPVLLDAICKLIEDLPVKSDSIYIDSTLGEGTHAKAILEKYDFLSLIGIERDFQILQRA 66

Query: 75  QETMRDYKEQFSLFQATFSQL-QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           ++ +  ++++ + F   F     +Y  +   + ++ DLG+S        +GFSF +  PL
Sbjct: 67  KQFLLIFEDRITYFNDWFDNFFANYPLNAKANFILVDLGISMFHYKGSKKGFSFLEDEPL 126

Query: 134 DMRMSCSGISAS--DVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           DMR+  S  S S  ++VN  +  DL  ++  L  E  + RI+ AIV+ R+    QTT++L
Sbjct: 127 DMRLCSSSCSISAAEIVNTFSKYDLEELIYDLSNEHYSRRISKAIVEYRKIKKIQTTKEL 186

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            S+I K   FSK  +I+PAT++FQALRI+VN+E+  L + L    + L   G+L +++FH
Sbjct: 187 QSIINKVYPFSKA-KINPATKTFQALRIYVNDELTRLKRSLPLWVENLAKDGILAIITFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           S+EDR+VK FF S S  + A                I+KK ++P+ +++  N+ SRSAKL
Sbjct: 246 SIEDRIVKDFFRSLSFDLYA---------------KISKKPIIPSFDEIKKNKPSRSAKL 290

Query: 312 RA 313
           RA
Sbjct: 291 RA 292


>gi|298372234|ref|ZP_06982224.1| S-adenosyl-methyltransferase MraW [Bacteroidetes oral taxon 274
           str. F0058]
 gi|298275138|gb|EFI16689.1| S-adenosyl-methyltransferase MraW [Bacteroidetes oral taxon 274
           str. F0058]
          Length = 297

 Score =  158 bits (400), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 107/300 (35%), Positives = 169/300 (56%), Gaps = 17/300 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           HVPVLLE+ I  L   P  V +D TFG GG+SR+   ++G+   +   D+D  A    + 
Sbjct: 3   HVPVLLEESIECLRIKPDGVYVDCTFGGGGHSRAILARLGNKGKLYGFDQDREAY---RN 59

Query: 77  TMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           T  D  E+F+  +  F  + +   Y  +  VDG++ DLGVSS   D  +RGFS++  G L
Sbjct: 60  TTDD--ERFTFVRGNFKYISNFLRYYGEDKVDGILADLGVSSHHFDEAERGFSYRFDGTL 117

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  +  +A +++N  + + L  IL + GE + A RIA+AIV RRQ+   +T  +L+
Sbjct: 118 DMRMNREASFTAEELINGYDEQALADILYLYGELRNARRIANAIVCRRQTKAIKTIFELT 177

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +++   + +K          FQA+RI VN E++ L   L  +   L++GG + V+S+HS
Sbjct: 178 EVLRP--FCTKGKEYKELAPIFQAIRIEVNAELDSLKTLLCRSVDLLRSGGRIAVISYHS 235

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDRLVK F  + +      +    +   P  F +++K +V   +E +A N R+RSA+LR
Sbjct: 236 LEDRLVKNFLKTGNFGGEPQKDFYGNQITP--FANVSKAIVSNDRE-IADNPRARSARLR 292


>gi|77408183|ref|ZP_00784928.1| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae COH1]
 gi|77173198|gb|EAO76322.1| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae COH1]
          Length = 298

 Score =  158 bits (400), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 101/297 (34%), Positives = 163/297 (54%), Gaps = 12/297 (4%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQETMRDYKE--QF 85
           +L+  P    +DAT G  G+S     ++G +  + A D+D  A+      ++ Y +  Q 
Sbjct: 1   MLDIKPDGTYVDATLGGAGHSEYLLSQLGPDGHLYAFDQDQKAIDIAHIRLKKYVDTGQV 60

Query: 86  SLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-G 141
           +  +  F  L   +   GV   +G+ +DLGVSS Q+D  +RGFS+++  PLDMRM+    
Sbjct: 61  TFIKDNFRNLSSNLKALGVSEINGICYDLGVSSPQLDERERGFSYKQDAPLDMRMNREQS 120

Query: 142 ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYF 201
           ++A DVVN  +  DL RI    GE+K + +IA  I + R   P  TT +L+ +I+ +   
Sbjct: 121 LTAYDVVNTYSYHDLVRIFFKYGEDKFSKQIARKIEQVRAEKPISTTTELAEIIKSSKSA 180

Query: 202 SK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKK 260
            +   + HPA + FQA+RI VN+E+    + ++ A   L   G + V++FHSLEDRL K+
Sbjct: 181 KELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDLLAVDGRISVITFHSLEDRLTKQ 240

Query: 261 FFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
            F   S  +V      IP +  P + + + +K ++P+QE++  N R+ SAKLR   R
Sbjct: 241 LFKEASTVEVPKGLPFIPDDLQPKM-ELVNRKPILPSQEELEANNRAHSAKLRVARR 296


>gi|86149768|ref|ZP_01067997.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|88596954|ref|ZP_01100190.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|85839586|gb|EAQ56846.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|88190643|gb|EAQ94616.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|284925949|gb|ADC28301.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp.
           jejuni IA3902]
 gi|315929134|gb|EFV08361.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp.
           jejuni 305]
          Length = 310

 Score =  158 bits (400), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 106/302 (35%), Positives = 166/302 (54%), Gaps = 13/302 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           H+PVLL +V  +         LD T G GG+S +  K   ++  IA D+D  A+   ++ 
Sbjct: 5   HIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKNHPDLKFIACDQDQQALKFSKKR 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
           ++D++ + +  Q+ FS++ + +  K  + G++ D+GVSS Q+D  +RGFS   S  LDMR
Sbjct: 65  LKDFRNRITFMQSNFSEVLEKISHKEELRGILADIGVSSFQLDNNERGFSVN-SDFLDMR 123

Query: 137 MS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M+  S ISA +++N    + LT I    GE   A  IA  I   R   P ++ ++L  +I
Sbjct: 124 MNQNSKISAYEIINTYTKEQLTSIFKDYGELHDAHFIAEKICLERSKNPIKSAKELYQII 183

Query: 196 QKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
            K     +N+R I  AT +FQA+RI VN E++ L   L   E       +L ++SFHSLE
Sbjct: 184 GKG---KQNHRKISKATLAFQAIRIEVNQELKVLKDFLEHLENLKPKNCILAIISFHSLE 240

Query: 255 DRLVKKFFASRSGKVMAVRHMIPS---NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           DR+VK+FF   S   +    ++     N H ++ Q ITKK +  ++E++  N RS  AK+
Sbjct: 241 DRIVKQFFKKWSKNCICNEKIMRCECGNNH-SLGQIITKKAISASKEELLKNSRSSCAKM 299

Query: 312 RA 313
           RA
Sbjct: 300 RA 301


>gi|254459393|ref|ZP_05072814.1| S-adenosyl-methyltransferase MraW [Campylobacterales bacterium GD
           1]
 gi|207084006|gb|EDZ61297.1| S-adenosyl-methyltransferase MraW [Campylobacterales bacterium GD
           1]
          Length = 307

 Score =  158 bits (400), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 104/302 (34%), Positives = 170/302 (56%), Gaps = 15/302 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           H+PVL  +V+         +I+D T G GG+S    +   N+  IA+D+D  A+    + 
Sbjct: 6   HIPVLYREVVDTFKDIKNGIIIDCTMGYGGHSSMILESNPNIELIAIDQDQTAIDFSTKR 65

Query: 78  MRDYKEQFSLFQATFSQ-LQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           + ++ ++ S+ +  FS  ++D + + GVD   GV+ D+GVSS+Q+D  DRGFS++ S  L
Sbjct: 66  LEEFGDRVSIRKGRFSSVIKDIIAEYGVDKIRGVLADIGVSSLQLDQKDRGFSYE-SENL 124

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     +SA +VVN+ +  +L  IL   GE +   +IA AIV  R   PF + ++LS
Sbjct: 125 DMRMDKDAPLSAKNVVNEYSNSELENILLEYGELRNYKKIASAIVNSR---PFTSAKELS 181

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
              +  +   K  +IHPAT   QA+RI VN+E+ EL   L+S E +      + V+SFHS
Sbjct: 182 ERTKHLMPHGK--KIHPATLLMQAIRIEVNDELGELKSLLQSIEDSQFTDATVAVISFHS 239

Query: 253 LEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           LEDR+VK+ +   +   +     +    +   ++ + ++KK +    +++  N RSRSAK
Sbjct: 240 LEDRIVKQTYTKWTKNCICPDEAMRCTCSRDNSLGRILSKKPITAQDDELKENPRSRSAK 299

Query: 311 LR 312
           +R
Sbjct: 300 MR 301


>gi|333029398|ref|ZP_08457459.1| Ribosomal RNA small subunit methyltransferase H [Bacteroides
           coprosuis DSM 18011]
 gi|332739995|gb|EGJ70477.1| Ribosomal RNA small subunit methyltransferase H [Bacteroides
           coprosuis DSM 18011]
          Length = 305

 Score =  158 bits (400), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 106/300 (35%), Positives = 161/300 (53%), Gaps = 16/300 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76
           H+PVLL + I  LN  P  + +D TFG GG+S+   S      ++ + D+D       + 
Sbjct: 10  HIPVLLNESINGLNIDPQGIYVDVTFGGGGHSKEILSHLAPTGHLFSFDQDK---DAEKN 66

Query: 77  TMRDYKEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           + +D   +F+  ++ F  +++   Y     V G++ DLGVSS   D  +RGFSF+    L
Sbjct: 67  SFQD--SRFTFVRSNFRYIKNFLQYYHVTEVSGILADLGVSSHHFDESERGFSFRFDADL 124

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  +  +A+D+VN  + + L  +  + GE K + RIA  IVK R   P +T     
Sbjct: 125 DMRMNTRASKTAADIVNNYSQEQLADVFYLYGELKNSRRIASKIVKYRAENPIKTIAQFI 184

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I  T  F    +     + FQALRI VN E+E L + L SA   LK GG L V+++HS
Sbjct: 185 EVI--TPLFGPQRQKKDFAKVFQALRIEVNEEMEALREMLISAIGLLKPGGRLAVITYHS 242

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK  F  ++G +    +        +  ++I  KV++PT ++   N RSRSAKLR
Sbjct: 243 LEDRMVKNLF--KTGNIEGKLNKDFYGKIISPIKAINNKVIIPTDQEQELNPRSRSAKLR 300


>gi|317473246|ref|ZP_07932543.1| MraW methylase [Anaerostipes sp. 3_2_56FAA]
 gi|316899341|gb|EFV21358.1| MraW methylase [Anaerostipes sp. 3_2_56FAA]
          Length = 303

 Score =  158 bits (400), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 97/300 (32%), Positives = 162/300 (54%), Gaps = 9/300 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
           +H  VLL++ I  L   P  + +D T G GG++       S     I +D+D  A+    
Sbjct: 4   EHASVLLDETIRELKIKPDGIYVDGTLGGGGHAFHVLNRLSEKGRYIGIDQDEDAIRAST 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + +  ++++ ++ +  +  +   + D G   VDG++ DLGVSS Q+D  DRGF++++  P
Sbjct: 64  KRLAPFQDKVTIVRDNYVNMPKVLKDLGISRVDGILLDLGVSSFQLDEKDRGFTYREDVP 123

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM      SA D+VN  + ++L  I+   GE+K A  IA  I   R+  P +TT  L
Sbjct: 124 LDMRMDQRQTFSARDIVNGYSEQELFHIIRDYGEDKFAKNIAKHIAAEREKVPIETTGQL 183

Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+  +    +    HPA R+FQA+RI  N E+E L   L    + L   G L +++F
Sbjct: 184 IEVIKHAIPMKVRAVGGHPAKRTFQAIRIECNRELEVLKTSLDQMIELLNPEGRLCIITF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK+ F           +  I +  + +  + IT+K ++PT+E++  N+R++S+
Sbjct: 244 HSLEDRIVKRAFRKNENPCTCPPNFPICTCGNESKGKVITRKPIIPTEEELMRNKRAKSS 303


>gi|315926807|gb|EFV06181.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp.
           jejuni DFVF1099]
          Length = 310

 Score =  158 bits (400), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 106/302 (35%), Positives = 166/302 (54%), Gaps = 13/302 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           H+PVLL +V  +         LD T G GG+S +  K   ++  IA D+D  A+   ++ 
Sbjct: 5   HIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKNHPDLKFIACDQDQQALEFSKKR 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
           ++D++ + +  Q+ FS++ + +  K  + G++ D+GVSS Q+D  +RGFS   S  LDMR
Sbjct: 65  LKDFRNRITFMQSNFSEVLEKISHKEELRGILADIGVSSFQLDNNERGFSVN-SDFLDMR 123

Query: 137 MS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M+  S ISA +++N    + LT I    GE   A  IA  I   R   P ++ ++L  +I
Sbjct: 124 MNQNSKISAYEIINTYTKEQLTSIFKDYGELHDAHFIAEKICLERSKNPIKSAKELYQII 183

Query: 196 QKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
            K     +N+R I  AT +FQA+RI VN E++ L   L   E       +L ++SFHSLE
Sbjct: 184 GKG---KQNHRKISKATLAFQAIRIEVNQELKVLKDFLEHLENLKPKNCILAIISFHSLE 240

Query: 255 DRLVKKFFASRSGKVMAVRHMIPS---NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           DR+VK+FF   S   +    ++     N H ++ Q ITKK +  ++E++  N RS  AK+
Sbjct: 241 DRIVKQFFKKWSKNCICNEKIMRCECGNNH-SLGQIITKKAISASKEELLKNSRSSCAKM 299

Query: 312 RA 313
           RA
Sbjct: 300 RA 301


>gi|225429894|ref|XP_002283626.1| PREDICTED: similar to Os02g0137600 [Vitis vinifera]
          Length = 444

 Score =  158 bits (400), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 110/344 (31%), Positives = 171/344 (49%), Gaps = 51/344 (14%)

Query: 20  HVPVLLEKVIALLNPA-------PGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPF 69
           HVPV+L +V+ + +         P +  +D T GA G+S +  +    +   + +D DP 
Sbjct: 96  HVPVMLGEVLEVFSSFSSSSSSSPLRSFVDCTLGAAGHSSAIIQAHPELELYVGMDVDPI 155

Query: 70  AVSCGQETMRD------------YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQ 117
           A    Q  +R             +   F   ++   ++ + +   GVDG++ DLG+SSMQ
Sbjct: 156 AHEKAQARIRSLCGDSSHLKAHTFMRNFKNIKSVLREVDEELLSSGVDGILMDLGMSSMQ 215

Query: 118 IDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
           ++  +RGFS   +GPLDMRM   + ++A D++N     ++ RIL   GEE     + + I
Sbjct: 216 VNNAERGFSVLANGPLDMRMDPQASLTAEDILNSWPDTEVGRILREYGEESNWRSLQNKI 275

Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFSKNNR---IHPATRSFQALRIFVNNEIEELAQGLR 233
           VK R      +T +L  LI+KT   ++  R   I  ATR FQALRI VN+E++ L   L 
Sbjct: 276 VKARLFGGLHSTGELVDLIRKTTPRTRGGRQGWIKTATRVFQALRIAVNDELKTLEDSLY 335

Query: 234 SAEKALKAGGLLIVVSFHSLEDRLVKKFF---------------ASRSGKVMAVRHMIPS 278
           +  + L  GG L V+SFHSLEDR+VK+ F                 + G    +R++   
Sbjct: 336 ACFECLTPGGRLAVISFHSLEDRIVKQTFLDIINSNGEDESGEGGGQEGCGKDLRNIRND 395

Query: 279 NAHPAVF----------QSITKKVVVPTQEDVAFNRRSRSAKLR 312
           N     +            +TK+ + P++E+   NRRSRSAKLR
Sbjct: 396 NDEKEAWIKQMVQGWNGTILTKRPITPSEEEERLNRRSRSAKLR 439


>gi|255994327|ref|ZP_05427462.1| S-adenosyl-methyltransferase MraW [Eubacterium saphenum ATCC 49989]
 gi|255993040|gb|EEU03129.1| S-adenosyl-methyltransferase MraW [Eubacterium saphenum ATCC 49989]
          Length = 311

 Score =  158 bits (400), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 107/302 (35%), Positives = 168/302 (55%), Gaps = 10/302 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H PV+L + I  LN       +D T G GG+     K  S    +I +D+D  A+   + 
Sbjct: 5   HSPVMLHECIEALNIKEDGTYIDCTLGGGGHFTEIAKRLSEDGRLIGIDKDADAIDAYRR 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQKSGPL 133
              + + +  + ++ F  +++     G+DG   ++ DLGVSS Q+D   RGFS++   PL
Sbjct: 65  RNVNTRCKVDIVKSDFKDIREVAAKTGIDGADGILMDLGVSSYQLDKASRGFSYKNDAPL 124

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM      +A  VVN+ + ++LTR++    +EK A+RIA AIV+ R+ A  ++T  LS
Sbjct: 125 DMRMDREQKFTAKTVVNEYSKEELTRVIREYSDEKWAARIAAAIVREREEAEIESTARLS 184

Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I++ +   ++    HPA R+FQA+RI VN E+  L + L+ A+  L   G L V+SFH
Sbjct: 185 EIIKEAIPAATRRTGPHPAKRTFQAIRIEVNGELGMLEKTLKDAKAILNKNGRLAVISFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT-KKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VKK+        +  +  IP  A       IT  K++ P+ +++  N R+RSAK
Sbjct: 245 SLEDRIVKKWIQDELHPCICPKD-IPVCACNRRSDIITVGKIICPSVDELDRNPRARSAK 303

Query: 311 LR 312
           LR
Sbjct: 304 LR 305


>gi|15828964|ref|NP_326324.1| methyltransferase [Mycoplasma pulmonis UAB CTIP]
 gi|20139101|sp|Q98Q75|RSMH_MYCPU RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|14089907|emb|CAC13666.1| METHYLTRANSFERASE [Mycoplasma pulmonis]
          Length = 299

 Score =  158 bits (399), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 103/300 (34%), Positives = 159/300 (53%), Gaps = 16/300 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H PVLL+ VI  L   P  + +D T G  G+S    K  S+   +I  D+D FA+   ++
Sbjct: 4   HKPVLLKDVIENLEINPEGIYVDLTLGYAGHSSEILKKLSSKGKLIGFDQDSFAIEKSRQ 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +    + F L    F   + Y+       VDG + DLGVSS+Q+D   RGFS+ K GPL
Sbjct: 64  RLSQISDNFVLINDNFVNFKVYLDKMNISFVDGFLLDLGVSSVQLDFAHRGFSYSKLGPL 123

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+    + A D+VN  + + L +I     + K A ++A  IV  R   P + T +L 
Sbjct: 124 DMRMNLDQPLKADDIVNGYDQESLCKIFIENADVKLAKQVAKGIVNNR---PIKDTLELV 180

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I+ ++  +   + +PA   FQA+RI VN+E+  L + L  +   LK    +++++FHS
Sbjct: 181 EVIRSSLPAALVRKKNPAKAVFQAIRIAVNDELIVLKKFLAQSLDFLKKDSKMLIITFHS 240

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           +EDR+VK FF  +       R  I       V      K + PT+E++A NRR++S+KLR
Sbjct: 241 IEDRIVKDFFKRQVKNKHDRRLPIMEQKDYQV------KTIKPTEEEIAQNRRAKSSKLR 294


>gi|260435603|ref|ZP_05789573.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. WH 8109]
 gi|260413477|gb|EEX06773.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. WH 8109]
          Length = 294

 Score =  158 bits (399), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 111/305 (36%), Positives = 165/305 (54%), Gaps = 28/305 (9%)

Query: 20  HVPVLLEKVI--ALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQ 75
           H PVL + V+  A   P P  +++DAT G GG+S    +   ++  I LD+D  A +   
Sbjct: 6   HEPVLADAVLDAARQIPRPDGLLIDATLGGGGHSARLLQQHPSLRLIGLDQDATARAAAA 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           E +  +  + S+    F+   DYVP +    V+ DLGVSS Q+D  +RGFSF+  GPLDM
Sbjct: 66  ERLAPFGARVSIVATNFA---DYVPPEPAVMVLADLGVSSPQLDVAERGFSFRLDGPLDM 122

Query: 136 RMSCSGI--SASDVVNQANVKDLTRILGILGEEKQASRIAHAI-VKRRQSAPFQTTQDLS 192
           RM+ SG   +A++++++    +L  ++   GEE+ + RIA  I    +    ++ T  L+
Sbjct: 123 RMNASGEGETAAELIDRLEENELADLIYGYGEERLSRRIARRIKADLKDKGSYEGTAALA 182

Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             +       ++  RIHPATR+FQALRI VN+E+  L + L+ A   L+  GLL ++SFH
Sbjct: 183 YAVAGCYPPKARRGRIHPATRTFQALRIAVNDELGVLDRLLQQAPDWLEPEGLLGIISFH 242

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR VK  F                       + IT+K VV T+++   N RSRSAKL
Sbjct: 243 SLEDRRVKTAFLRDE-----------------RLKRITRKPVVATEQEEEANPRSRSAKL 285

Query: 312 RAGMR 316
           R   R
Sbjct: 286 RVAQR 290


>gi|295116225|emb|CBL37072.1| S-adenosyl-methyltransferase MraW [butyrate-producing bacterium
           SM4/1]
          Length = 382

 Score =  158 bits (399), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 104/321 (32%), Positives = 178/321 (55%), Gaps = 10/321 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76
           H  VLL + +  LN  P  + +D T G GG++    S    G  +I LD+D  A++   E
Sbjct: 5   HTSVLLYETVDSLNIRPDGIYVDGTLGGGGHASLVLSRLGEGGRLIGLDQDADAIAAATE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS-GP 132
            ++ Y ++ ++ +  +  +++ +   G   VDG+  DLGVSS Q+D  +RGF++++   P
Sbjct: 65  RLKPYGDRVTVIRTNYENIKEALASLGIAKVDGIYLDLGVSSYQLDTAERGFTYREDDAP 124

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM      +A D+VN  +  +L RI+   GE++ A  IA  IVK RQ    +T  +L
Sbjct: 125 LDMRMDQRRSETAKDIVNGYSEMELYRIIRDYGEDRFAKNIAKHIVKARQEKEIETAGEL 184

Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           + +I+  +    +    HPA R+FQA+RI +N E++ L   + +  + L  GG L V++F
Sbjct: 185 TEIIRAAIPAKIRATGGHPAKRTFQAIRIELNRELQVLENSIDTMIELLNPGGRLSVITF 244

Query: 251 HSLEDRLVK-KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK +F  + +         +      +  + +T+K ++P+ E+++ N+RS+SA
Sbjct: 245 HSLEDRIVKNRFRINENPCTCPPEFPVCMCGKKSRGRVVTRKPILPSDEELSANKRSKSA 304

Query: 310 KLRAGMRTVERSIEDDSFVHL 330
           KL    +   RS + ++F  L
Sbjct: 305 KLECSKKQAIRSSKPEAFRGL 325


>gi|320530962|ref|ZP_08031995.1| S-adenosyl-methyltransferase MraW [Selenomonas artemidis F0399]
 gi|320136827|gb|EFW28776.1| S-adenosyl-methyltransferase MraW [Selenomonas artemidis F0399]
          Length = 310

 Score =  158 bits (399), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 111/304 (36%), Positives = 155/304 (50%), Gaps = 14/304 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           HV VL  + +A L+  P    +D T GA G++       S    +I +D+D  A++  Q 
Sbjct: 5   HVSVLPAETVAALSVVPEGTYVDCTLGAAGHAGRIAAQLSPAGRLIGIDQDETAIAAAQV 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +     + SL    F  L   +  +GV   DG++FDLGVSS QID   RGFS+ +  PL
Sbjct: 65  RLASAACRVSLVHDNFRNLTAILTAEGVSAVDGILFDLGVSSPQIDTAARGFSYMQDAPL 124

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM   +  SA  VVN+ +   LT +    GEE+ A RIA  I   R+  P +TT +L 
Sbjct: 125 DMRMDRRAARSAYTVVNEYSAARLTELFYDYGEERWAKRIAAFIEAARKERPIETTGELV 184

Query: 193 SLIQKTVYFSKNNRI---HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            +I + V   K  R    HPA R FQA+RI VN E+  L   + +A   LK GG + V++
Sbjct: 185 EIIDRAV--PKKVRAKGGHPAKRVFQAIRIEVNEELTILPDAVTAAVHTLKPGGRIAVIT 242

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK+     +   +   H  +    H    + I K       E  A N R++S
Sbjct: 243 FHSLEDRIVKRTMQQLARGCICPPHTPVCICGHTPELRLIGKAQTASLAE-CAANARAKS 301

Query: 309 AKLR 312
           AKLR
Sbjct: 302 AKLR 305


>gi|328773130|gb|EGF83167.1| hypothetical protein BATDEDRAFT_21617 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 434

 Score =  158 bits (399), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 110/337 (32%), Positives = 160/337 (47%), Gaps = 68/337 (20%)

Query: 16  TIGDHVPVLLEKVIALLNPA----------------PGKVILDATFGAGGYSRSFC-KMG 58
           T  DH PVLL  V+ +L+P                   ++I DATFG GGY+++   KM 
Sbjct: 49  TKPDHKPVLLVPVVDILSPEFDLQSRERQSQRVRFQRPRLICDATFGNGGYTKALLDKMD 108

Query: 59  SNVIALDRDPFAVSCGQET--MRDYKEQFSLFQATFSQLQDYVP------DKGVDGVVFD 110
             V  +D+DP A+    +     +YK +       FS +Q+ +       +  +DG+VFD
Sbjct: 109 CKVFCVDQDPLAIERAMDMSLKPEYKNRLIPIHGKFSDIQNLIAPYTASHEACLDGIVFD 168

Query: 111 LGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQAS 170
           +G+SS Q+D   RGFSF+K GPLD                    DL RIL   GEEK A 
Sbjct: 169 IGISSNQLDDASRGFSFRKDGPLDY----------------PEMDLVRILQQYGEEKNAY 212

Query: 171 RIAHAIVKRRQSAPFQTTQDLSSLIQKTV----YFSKNNRIHPATRSFQALRIFVNNEIE 226
           +I   I   R      TT  L+ +I K V    ++ + ++ HPA ++   +RI++N+E++
Sbjct: 213 KIVRMIAAIRSKTYINTTTQLAQIIAKAVGKEEHWQQGHK-HPAMKT---IRIYINDELK 268

Query: 227 ELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ 286
           +L QGL  AE+ LK  G  +VV+FHSLEDR+VK+FF                    A  Q
Sbjct: 269 QLQQGLVMAERLLKPDGRCVVVTFHSLEDRIVKRFFQ-------------------ACAQ 309

Query: 287 SITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIE 323
            +T   + P        R S   K +  + T ER  E
Sbjct: 310 GVTPDELPPPMTQQESRRESTRVKSQIALETAERKRE 346



 Score = 36.2 bits (82), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 16/30 (53%), Positives = 23/30 (76%)

Query: 288 ITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           ++KK +VP ++++  N RSRSAKLRA  RT
Sbjct: 395 LSKKAIVPDEKEMQENSRSRSAKLRAARRT 424


>gi|326559297|gb|EGE09724.1| S-adenosyl-methyltransferase MraW [Moraxella catarrhalis 7169]
 gi|326568235|gb|EGE18317.1| S-adenosyl-methyltransferase MraW [Moraxella catarrhalis BC8]
 gi|326569935|gb|EGE19982.1| S-adenosyl-methyltransferase MraW [Moraxella catarrhalis BC1]
 gi|326573681|gb|EGE23639.1| S-adenosyl-methyltransferase MraW [Moraxella catarrhalis O35E]
          Length = 330

 Score =  158 bits (399), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 110/315 (34%), Positives = 174/315 (55%), Gaps = 24/315 (7%)

Query: 20  HVPVLLEKVIAL------LNPAPGKV---ILDATFGAGGYSR---SFCKMGSNVIALDRD 67
           H  VLL + +A+      LN    KV    +DATFG GG+S+    +    + +   D+D
Sbjct: 13  HTTVLLPETVAMVLGVKQLNDVTSKVSGVYVDATFGRGGHSQLLLEYLAPEATLAVFDKD 72

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRG 124
           P A++  + ++     +  +   +F+ L   +   G+D   G++ DLGVSS Q+D G RG
Sbjct: 73  PEAIAVAK-SLAAQDTRIKVVHDSFAHLTKNLQALGIDKIDGLMADLGVSSPQLDDGTRG 131

Query: 125 FSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           FSF + G +DMRM  + G   S+ + + +  +L  +L   GEE+ + +IA AI K  Q+ 
Sbjct: 132 FSFMRDGVVDMRMDTTRGEPVSEWLQRVSADELADVLYEYGEERHSRKIARAI-KSMQN- 189

Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
            + +T+ L+ +I K  + +     HPAT+SFQA+RIF+NNE+ ++   L  +   LKAGG
Sbjct: 190 -YTSTRQLAEVI-KQAHPAWQKGKHPATQSFQAMRIFINNELGDVEAFLAQSIGVLKAGG 247

Query: 244 LLIVVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           +L V+SFHSLEDRL+K+F    S G+      +      P  F     K + P+ ++V  
Sbjct: 248 MLAVISFHSLEDRLIKQFLQRHSRGQYEEDARLPIIPKRPKYFGK--PKRIGPSDQEVKA 305

Query: 303 NRRSRSAKLRAGMRT 317
           N R+RSA LR  +R+
Sbjct: 306 NPRARSAWLRGAVRS 320


>gi|89895661|ref|YP_519148.1| hypothetical protein DSY2915 [Desulfitobacterium hafniense Y51]
 gi|219670081|ref|YP_002460516.1| S-adenosyl-methyltransferase MraW [Desulfitobacterium hafniense
           DCB-2]
 gi|122482071|sp|Q24TD8|RSMH_DESHY RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446217|sp|B8FT64|RSMH_DESHD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|89335109|dbj|BAE84704.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219540341|gb|ACL22080.1| S-adenosyl-methyltransferase MraW [Desulfitobacterium hafniense
           DCB-2]
          Length = 310

 Score =  158 bits (399), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 107/305 (35%), Positives = 164/305 (53%), Gaps = 16/305 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQE 76
           HV VLL++ +  +   P    +D T G  G   Y  S       ++  D+DP A+   Q+
Sbjct: 5   HVTVLLKETVDGVVRDPSGTYVDCTLGGAGHSGYVLSRLSEKGKLVGFDQDPLAIKNAQD 64

Query: 77  TMRDYKEQFSL---FQATFSQLQ--DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   F +   F+     LQ  + +P   V GV+FDLGVSS Q+D  +RGFS+ +  
Sbjct: 65  KFAGDPRVFLVNRNFEGLEESLQSLELLP---VQGVLFDLGVSSPQLDEAERGFSYMQDA 121

Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM+    +SA  +VN+   + L  IL   GEEK + RI   IV+ R+     TT +
Sbjct: 122 ELDMRMNPQNPLSAKTLVNEGKAEMLAEILWKYGEEKWSKRIVEFIVEARKQKSITTTGE 181

Query: 191 LSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I++ +   ++    HPA R+FQALRI VN+E+  L + L    + L  GG + V++
Sbjct: 182 LVDIIKRAIPAGARREGPHPAKRTFQALRIAVNDELGVLERALDQVIRCLAPGGRVGVIT 241

Query: 250 FHSLEDRLVKKFFASRSGKVMA--VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           FHSLEDR+VK+ F S  G+     V  +    A  A+ + + +K ++P+ +++  N R+R
Sbjct: 242 FHSLEDRIVKETFNSWLGRCTCPPVFPVCQCGAR-AMARLVHRKPILPSPQEIEANPRAR 300

Query: 308 SAKLR 312
           SAKLR
Sbjct: 301 SAKLR 305


>gi|329964563|ref|ZP_08301617.1| S-adenosyl-methyltransferase MraW [Bacteroides fluxus YIT 12057]
 gi|328524963|gb|EGF52015.1| S-adenosyl-methyltransferase MraW [Bacteroides fluxus YIT 12057]
          Length = 319

 Score =  157 bits (398), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 103/300 (34%), Positives = 159/300 (53%), Gaps = 16/300 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H+PVLL   +  +N  P    +D TFG GG+S+        G  ++  D+D       + 
Sbjct: 18  HIPVLLMPSVDGMNIRPDGTYVDVTFGGGGHSKEILSRLGDGGRLLGFDQDE---DAERN 74

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + D    F   ++ F  L +++   G   VD ++ DLGVSS   D  +RGFSF+  G L
Sbjct: 75  IVND--PHFIFVRSNFRYLHNFLRYHGIGQVDAILADLGVSSHHFDDSERGFSFRFEGAL 132

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  +G +A+D+VN  + + L  I  + GE K + ++A  IVK R      T  +  
Sbjct: 133 DMRMNKRAGTTAADIVNAYDEERLADIFYLYGELKNSRKLASVIVKARALQKISTIGEFL 192

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +++    F +        + FQALRI VN E+E L + L +A +ALK GG L V+++HS
Sbjct: 193 DIVKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLYAATEALKPGGRLAVITYHS 250

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK    + + +  A +    +   P  F+ +  KV+VP + ++  N RSRSAKLR
Sbjct: 251 LEDRIVKNVMKTGNIEGKAEKDFYGNVRAP--FRLVNNKVIVPDESEIERNPRSRSAKLR 308


>gi|330938035|gb|EGH41807.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 246

 Score =  157 bits (398), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 95/238 (39%), Positives = 142/238 (59%), Gaps = 12/238 (5%)

Query: 84  QFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
           +F + Q +F++L     ++G    V G++ DLGVSS Q+D  +RGFSF   GPLDMRM  
Sbjct: 6   RFVIVQRSFAELGSETQERGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDGPLDMRMDP 65

Query: 140 S-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198
           + G+SA++ +  A  +++ R+    GEE+ A R+A+A+V RR+  PF+ T DL+ ++ K 
Sbjct: 66  TCGVSAAEFIATAPAEEIARVFKEYGEERFAKRMANAVVARREVQPFERTADLAEVL-KV 124

Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258
              +     +PATR+FQ LRI VNNE+ +L  GL +A  AL+ GG L+V+SFHSLEDR+V
Sbjct: 125 ANPAWEKGKNPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLVVISFHSLEDRIV 184

Query: 259 KKFFASRS-GKVMAVRHMIPSNAHPAVFQ---SITKKVVVPTQEDVAFNRRSRSAKLR 312
           K F    + G+   +   +P    P  F+    I  K    +  +   N RSRSA +R
Sbjct: 185 KLFMRKLAKGEADNMPRNLPIQYKP--FEPKIKIHGKAQFASDVETKANPRSRSAVMR 240


>gi|326564327|gb|EGE14557.1| S-adenosyl-methyltransferase MraW [Moraxella catarrhalis 103P14B1]
 gi|326565092|gb|EGE15285.1| S-adenosyl-methyltransferase MraW [Moraxella catarrhalis 46P47B1]
 gi|326570013|gb|EGE20059.1| S-adenosyl-methyltransferase MraW [Moraxella catarrhalis BC7]
 gi|326574697|gb|EGE24633.1| S-adenosyl-methyltransferase MraW [Moraxella catarrhalis 101P30B1]
          Length = 330

 Score =  157 bits (398), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 111/315 (35%), Positives = 173/315 (54%), Gaps = 24/315 (7%)

Query: 20  HVPVLLEKVIAL------LNPAPGKV---ILDATFGAGGYSR---SFCKMGSNVIALDRD 67
           H  VLL + +A+      LN    KV    +DATFG GG+S+    +    + +   D+D
Sbjct: 13  HTTVLLPETVAMVLGVKQLNDVTSKVSGVYVDATFGRGGHSQLLLEYLAPEATLAVFDKD 72

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRG 124
           P A++  + ++     +  +   +F+ L   +   G+D   G++ DLGVSS Q+D G RG
Sbjct: 73  PEAIAVAK-SLAAQDTRIKVVHDSFAHLTKNLQALGIDKIDGLMADLGVSSPQLDDGTRG 131

Query: 125 FSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           FSF + G +DMRM  + G   S+ + + +  +L  +L   GEE+ + +IA AI K  Q+ 
Sbjct: 132 FSFMRDGVVDMRMDTTRGEPVSEWLQRVSADELADVLYEYGEERHSRKIARAI-KSMQN- 189

Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
            + +T+ L+ +I K  + +     HPAT+SFQA+RIF+NNE+ ++   L  +   LKAGG
Sbjct: 190 -YTSTRQLAEVI-KQAHPAWQKGKHPATQSFQAMRIFINNELGDVEAFLAQSIGVLKAGG 247

Query: 244 LLIVVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           +L V+SFHSLEDRL+K+F    S G+      +      P  F     K V P  ++V  
Sbjct: 248 MLAVISFHSLEDRLIKQFLQRHSRGQYEEDARLPIIPKRPKYFGK--PKRVGPCDQEVKA 305

Query: 303 NRRSRSAKLRAGMRT 317
           N R+RSA LR  +R+
Sbjct: 306 NPRARSAWLRGAVRS 320


>gi|302671225|ref|YP_003831185.1| S-adenosyl-methyltransferase MraW [Butyrivibrio proteoclasticus
           B316]
 gi|302395698|gb|ADL34603.1| S-adenosyl-methyltransferase MraW [Butyrivibrio proteoclasticus
           B316]
          Length = 313

 Score =  157 bits (397), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 97/307 (31%), Positives = 162/307 (52%), Gaps = 19/307 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQE 76
           H  VLL + +  LN  P  + LD T G  G+S    +    G ++   D+D  A++   +
Sbjct: 5   HYSVLLHECLDNLNIKPDGIYLDGTLGGAGHSFHIAERLDKGGHLYGTDQDEDAIAAATK 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  + ++ ++ +  +      + +    GVDG++ DLGVSS Q+D  +RGF++++  PL
Sbjct: 65  RLEPFSDRVTIIRDNYENAVTRLKNLGVTGVDGILLDLGVSSYQLDNAERGFTYKEDVPL 124

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     ++A D+VN  +  ++  I+   GE+K A  IA  I   R  AP +TT  L+
Sbjct: 125 DMRMDQRQTLTARDIVNDYSETEIFHIIRDYGEDKFAKNIAKHICIERAKAPIETTFQLN 184

Query: 193 SLIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  +      +  HP+ R++QA+RI +N E++ L   L      L  GG L V++FH
Sbjct: 185 DIIKAAIPAKMREKGGHPSKRTYQAIRIALNRELDVLQNSLDGFIDFLNPGGRLCVITFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF------QSITKKVVVPTQEDVAFNRR 305
           SLEDR+ K  F +            P N    V       + +T+K ++P+ +++A N+R
Sbjct: 245 SLEDRITKNNFRTNENPCTC-----PPNFPVCVCGKKSKGRVVTRKPILPSDQELAENKR 299

Query: 306 SRSAKLR 312
           S+SAKLR
Sbjct: 300 SQSAKLR 306


>gi|51598567|ref|YP_072755.1| hypothetical protein BG0310 [Borrelia garinii PBi]
 gi|108868281|sp|Q661V8|RSMH_BORGA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|51573138|gb|AAU07163.1| conserved hypothetical protein [Borrelia garinii PBi]
          Length = 296

 Score =  157 bits (397), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 100/302 (33%), Positives = 168/302 (55%), Gaps = 24/302 (7%)

Query: 20  HVPVLLEKVIALLNPAPGK---VILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           H PVLL+ +  L+   P K   + +D+T G G ++++  +     +++ ++RDP  +   
Sbjct: 7   HFPVLLDAICKLIEDLPVKSDLIYIDSTLGEGAHAKAILEKYDFLSLVGIERDPQILERA 66

Query: 75  QETMRDYKEQFSLFQATFSQL-QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           ++ +  +K + + F   F     +Y  +   + ++ DLG+S        +GFSF +  PL
Sbjct: 67  KQFLFAFKGRITYFNDWFDNFFVNYPLNAKANFILVDLGISMFHYKGSKKGFSFLEDEPL 126

Query: 134 DMRMSCSGISAS--DVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           DMR+  S  S S  D+VN  +  DL  ++  L  E  + RI+ AIV+ R+    +TT++L
Sbjct: 127 DMRLCSSSCSISAADIVNTFSKYDLESLIYDLSNEHYSRRISKAIVEYRKIKRIETTKEL 186

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            ++I K   FSK  +I+PAT++FQALRI VN+E+  L + L    + L   G+L +++FH
Sbjct: 187 QAVINKVYPFSKA-KINPATKTFQALRICVNDELARLKRSLPLWIENLAKDGILAIITFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           S+EDR+VK FF S S  + A                I+KK ++P+ +++  N+ SRSAKL
Sbjct: 246 SIEDRIVKDFFRSLSCDLYA---------------KISKKPIIPSFDEIKKNKPSRSAKL 290

Query: 312 RA 313
           RA
Sbjct: 291 RA 292


>gi|323486709|ref|ZP_08092030.1| hypothetical protein HMPREF9474_03781 [Clostridium symbiosum
           WAL-14163]
 gi|323400090|gb|EGA92467.1| hypothetical protein HMPREF9474_03781 [Clostridium symbiosum
           WAL-14163]
          Length = 314

 Score =  157 bits (397), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 98/303 (32%), Positives = 171/303 (56%), Gaps = 10/303 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ I  L+  P  + +D T G GG++   C+ +G     I +D+D  A++   E
Sbjct: 5   HKSVLLDETIESLDIKPDGIYVDGTLGGGGHASEVCRRLGDKGRFIGIDQDADAIAAASE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS-GP 132
            ++++ ++ ++ ++ +  + + + + G   VDG+  DLGVSS Q+D  +RGF++++   P
Sbjct: 65  RLKEFGDKVTIVRSNYENIDEVLKELGISQVDGIYLDLGVSSYQLDTAERGFTYREDDAP 124

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM     ++A D+VN  +  +L  I+   GE++ A  IA  IV+ RQ    +TT +L
Sbjct: 125 LDMRMDQRNEMTAKDIVNTYSESELFHIIKNYGEDRFAKNIAKHIVRARQEKEIETTGEL 184

Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+  +    +    HPA R+FQA+RI +N E+E L   +      L  GG L +++F
Sbjct: 185 IEIIKAAIPAKVRATGGHPAKRTFQAIRIELNKELEVLENSIDKMTDLLAPGGRLSIITF 244

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  F              +      +  + +T+K ++P++E+++ N+RS+SA
Sbjct: 245 HSLEDRIVKNRFRINENPCTCPPDFPVCMCGKKSKGRVVTRKPILPSEEELSENKRSKSA 304

Query: 310 KLR 312
           KLR
Sbjct: 305 KLR 307


>gi|309807753|ref|ZP_07701687.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LactinV
           01V1-a]
 gi|308169013|gb|EFO71097.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LactinV
           01V1-a]
          Length = 288

 Score =  157 bits (397), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 97/249 (38%), Positives = 141/249 (56%), Gaps = 13/249 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H  VLL + I  LN     V +DATFG GG++    K  SN  +I  D+D +A+   +++
Sbjct: 7   HYSVLLHETIDNLNLKNDGVYVDATFGGGGHASYLLKQLSNGHLIGFDQDEYAIELAKKS 66

Query: 78  MRDY-----KEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             +      K + SL    F  LQ  +       G+DG+ +DLGVSS Q D  +RGFS++
Sbjct: 67  FSEVLKANSKPKLSLVHDNFGNLQQNLAKLGFIDGIDGIYYDLGVSSPQFDQPERGFSYR 126

Query: 129 KSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
            +  LDMRM     + A  +VN  + K+L+ IL   G+EK A +IA  IV RR   P  T
Sbjct: 127 FNARLDMRMDQTKDLDAYKIVNTWSQKELSNILFKYGDEKYARQIAKNIVARRAIKPITT 186

Query: 188 TQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T +L  +I++ +  F++    HPA +SFQA+RI VN+E+E L + L  A + LK GG + 
Sbjct: 187 TFELVDIIKEAIPAFARRTGGHPAKKSFQAIRIAVNDELEVLEKSLLEAIEILKPGGRIC 246

Query: 247 VVSFHSLED 255
           V++F SLED
Sbjct: 247 VITFQSLED 255


>gi|57236996|ref|YP_178797.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni RM1221]
 gi|68565428|sp|Q5HV88|RSMH_CAMJR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|57165800|gb|AAW34579.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni RM1221]
 gi|315058156|gb|ADT72485.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp.
           jejuni S3]
          Length = 310

 Score =  157 bits (397), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 106/302 (35%), Positives = 166/302 (54%), Gaps = 13/302 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           H+PVLL +V  +         LD T G GG+S +  K   ++  IA D+D  A+   ++ 
Sbjct: 5   HIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKNHPDLKFIACDQDQQALEFSKKR 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
           ++D++ + +  Q+ FS++ + +  K  + G++ D+GVSS Q+D  +RGFS   S  LDMR
Sbjct: 65  LKDFRNRITFMQSNFSEVLEKISHKEELRGILADIGVSSFQLDNNERGFSVN-SDFLDMR 123

Query: 137 MS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M+  S ISA +++N    + LT I    GE   A  IA  I   R   P ++ ++L  +I
Sbjct: 124 MNQNSKISAYEIINTYTKEQLTSIFKDYGELHDAHFIAEKICLERSKNPIKSAKELYQII 183

Query: 196 QKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
            K     +N+R I  AT +FQA+RI VN E++ L   L   E       +L ++SFHSLE
Sbjct: 184 GKG---KQNHRKISKATLAFQAIRIEVNQELKVLKDFLGHLENLKPKNCILAIISFHSLE 240

Query: 255 DRLVKKFFASRSGKVMAVRHMIPS---NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           DR+VK+FF   S   +    ++     N H ++ Q ITKK +  ++E++  N RS  AK+
Sbjct: 241 DRIVKQFFKKWSKNCICNEKIMRCECGNNH-SLGQIITKKAISASKEELLKNSRSSCAKM 299

Query: 312 RA 313
           RA
Sbjct: 300 RA 301


>gi|305664541|ref|YP_003860828.1| S-adenosyl-methyltransferase MraW [Maribacter sp. HTCC2170]
 gi|88708558|gb|EAR00794.1| S-adenosyl-methyltransferase MraW [Maribacter sp. HTCC2170]
          Length = 297

 Score =  157 bits (397), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 110/310 (35%), Positives = 172/310 (55%), Gaps = 29/310 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MG--SNVIALDRDPFAVSCGQE 76
           H PVLL++ +  L+     V +D TFG GG+S+   K +G    ++A D+D  A+     
Sbjct: 3   HNPVLLKESVEGLDVKKDGVYVDVTFGGGGHSKEILKRLGPKGRLLAFDQDEDALD---N 59

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + D  E+F+L    F  ++ ++   G   VDG++ D GVSS Q D  +RGFS +    L
Sbjct: 60  KLGD--ERFTLINENFRYIRQFLKFYGIRKVDGILADFGVSSHQFDKAERGFSTRFDADL 117

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRMS  + +SA DVVN     DL ++L   G+ + A+ +A+ I+  R+ AP +T+  L 
Sbjct: 118 DMRMSKKNSVSAYDVVNSYEFNDLRKVLFQYGDLRNANAMANKIITSREEAPIKTSAQLK 177

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            ++++ +   K ++I    + +QA+RI VN EI+ + + L    + L  GG L V+S+HS
Sbjct: 178 EVLRQFLPKHKEHKI--LAQIYQAIRIEVNQEIQVIKELLEQVPELLNLGGRLSVISYHS 235

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT---KKV---VVPTQEDVAFNRRS 306
           LEDRLVK+F   R+G       +         + +I    KKV   +VP++E+ A N R+
Sbjct: 236 LEDRLVKRFI--RAG-------LFEGEPEKDFYGNIDVPLKKVGGLIVPSREETALNNRA 286

Query: 307 RSAKLRAGMR 316
           RSAKLR   R
Sbjct: 287 RSAKLRIAER 296


>gi|323692152|ref|ZP_08106395.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Clostridium symbiosum WAL-14673]
 gi|323503726|gb|EGB19545.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Clostridium symbiosum WAL-14673]
          Length = 314

 Score =  157 bits (397), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 98/303 (32%), Positives = 173/303 (57%), Gaps = 10/303 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ I  L+  P  + +D T G GG++   C+ +G     I +D+D  A++   E
Sbjct: 5   HKSVLLDETIESLDIKPDGIYVDGTLGGGGHASEVCRRLGDKGRFIGIDQDADAIAAASE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS-GP 132
            ++++ ++ ++ ++ +  + + + + G   VDG+  DLGVSS Q+D  +RGF++++   P
Sbjct: 65  RLKEFGDKVTIVRSNYENVDEVLKELGISQVDGIYLDLGVSSYQLDTAERGFTYREDDAP 124

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM   + ++A D+VN  +  +L  I+   GE++ A  IA  IV+ RQ    +TT +L
Sbjct: 125 LDMRMDQRNEMTAKDIVNTYSESELFHIIKNYGEDRFAKNIAKHIVRARQEKEIETTGEL 184

Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+  +    +    HPA R+FQA+RI +N E+E L + +      L  GG L +++F
Sbjct: 185 IEIIKAAIPAKVRATGGHPAKRTFQAIRIELNKELEVLEKSIDKMTDLLAPGGRLSIITF 244

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  F              +      +  + +T+K ++P++E+++ N+RS+SA
Sbjct: 245 HSLEDRIVKNRFRINENPCTCPPDFPVCMCGKKSKGRVVTRKPILPSEEELSENKRSKSA 304

Query: 310 KLR 312
           KLR
Sbjct: 305 KLR 307


>gi|123965435|ref|YP_001010516.1| S-adenosylmethionine-dependent methyltransferase [Prochlorococcus
           marinus str. MIT 9515]
 gi|262824968|sp|A2BUE8|RSMH_PROM5 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|123199801|gb|ABM71409.1| Predicted S-adenosylmethionine-dependent methyltransferase
           [Prochlorococcus marinus str. MIT 9515]
          Length = 300

 Score =  157 bits (397), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 104/277 (37%), Positives = 156/277 (56%), Gaps = 25/277 (9%)

Query: 41  LDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDY 98
           +DAT G GG+S    K   +  +I LD DP A       + ++K +  +  + FS  +  
Sbjct: 39  IDATLGGGGHSYQLLKKYPDLKIIGLDHDPIARESALNKLEEFKSRIEIIPSNFSNFE-- 96

Query: 99  VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLT 157
            P + V  V+ DLGV+S QID  +RGFSFQK GPLDMRM+    ++A +++   + KDL 
Sbjct: 97  -PKEKVSFVIADLGVNSNQIDSPERGFSFQKDGPLDMRMNPLIKMNAENLIETLSEKDLA 155

Query: 158 RILGILGEEKQASRIAHAIVKR-RQSAPFQTTQDLSSLIQKTVYFSKNNR-IHPATRSFQ 215
            ++   G+E+ + +I+  I K  ++   +  T+DL+  I       +  R IHPATR+FQ
Sbjct: 156 DLIFKFGDERLSRKISRKIKKDLKEKGKYSGTKDLAYSIAGCFPPKQRYRKIHPATRTFQ 215

Query: 216 ALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM 275
           ALRI VNNEIE L + L+ A   L  GG++ ++SFHS+EDRLVK  F             
Sbjct: 216 ALRIAVNNEIEALEKFLKIAPDWLLTGGIISIISFHSIEDRLVKNSFKGD---------- 265

Query: 276 IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
                     +++TKK + P ++++  N+RSRSAKLR
Sbjct: 266 -------YRLKNLTKKPITPNKKEIENNKRSRSAKLR 295


>gi|91216023|ref|ZP_01252992.1| S-adenosyl-methyltransferase MraW [Psychroflexus torquis ATCC
           700755]
 gi|91186000|gb|EAS72374.1| S-adenosyl-methyltransferase MraW [Psychroflexus torquis ATCC
           700755]
          Length = 303

 Score =  157 bits (397), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 107/302 (35%), Positives = 166/302 (54%), Gaps = 17/302 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H+PVLL++ +  ++  P    +D TFG GG+S     ++G    + A D+D  A     E
Sbjct: 9   HLPVLLKESVDGMSIQPEGTYVDVTFGGGGHSAEILSRLGEKGRLFAFDQDQDAQENSIE 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             R     F+L  A F  ++ ++  +GV   DG++ D GVSS Q D G+RGFS +    L
Sbjct: 69  DPR-----FTLIPANFRFIKRFLRLEGVNEVDGILGDFGVSSHQFDKGERGFSIRFEAEL 123

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM   +G+ AS++VN  + + L +++   GE K + ++A AIV+RR   P ++T+DL+
Sbjct: 124 DMRMDQNTGLGASELVNTYSQEQLAQLIWQYGEIKMSRKLAKAIVERRIIEPIKSTKDLN 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            L+  T +F          + +QA+RI VN E+E L + L    + +  GG L ++S+HS
Sbjct: 184 DLL--TPFFPPTKVNKFLAQVYQAIRIEVNQEMEALKEFLLQTSELITKGGRLSLISYHS 241

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDRLVK+F   R GK                F+ +  K++ P   ++  N+RSRSAKLR
Sbjct: 242 LEDRLVKRFI--RDGKFSGAPEKDFYGNMLVPFKKVG-KMITPGAAELQKNKRSRSAKLR 298

Query: 313 AG 314
            G
Sbjct: 299 IG 300


>gi|45657732|ref|YP_001818.1| S-adenosyl-methyltransferase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|88911699|sp|P62472|RSMH_LEPIC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|45600972|gb|AAS70455.1| S-adenosyl-methyltransferase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 334

 Score =  157 bits (397), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 119/336 (35%), Positives = 180/336 (53%), Gaps = 38/336 (11%)

Query: 1   MESKSCKTMS--------SAIHHTI-GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYS 51
           MES  C+T++          +H+++ G  +  + ++     +P    + LD T G GG+S
Sbjct: 1   MES-PCRTITLEKNGTSLEPVHYSVQGKEILQIFKENFQKEDPV---LFLDGTAGEGGHS 56

Query: 52  RSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL-QDYVPDKGVD--- 105
             F K    S +I  DRDP  +S     + D+ E+    Q  FS++ Q  +   G+D   
Sbjct: 57  FLFLKEFPNSRIILCDRDPIMLSRALTRLSDFSERVVSIQTNFSEINQKLLTSYGIDQTP 116

Query: 106 -GVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGIL 163
            G++ DLG+S+  +    RGFSF++S PLDMR++  SG SA +++N      L  I    
Sbjct: 117 QGILLDLGISTFHLFHSGRGFSFRESEPLDMRLNPNSGQSAEEILNIYPKDRLMNIFYTY 176

Query: 164 GEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV--YFSKNNRIHPATRSFQALRIFV 221
           GEE+ + +IA  IV+ R+     TT +L++L+ K +   F    R HPATR FQALRI V
Sbjct: 177 GEERWSKKIAEVIVETRKQNSISTTFELANLVSKIIPRKFWPPGR-HPATRIFQALRIEV 235

Query: 222 NNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH 281
           N E+  +  GL+     L+ GG++ V+SFHSLEDR+VK  F          R     N  
Sbjct: 236 NQELAHIENGLKLLLDLLRLGGVIQVISFHSLEDRIVKNSF----------RDYAKQNG- 284

Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
              F+ +TKK ++P+QE++  N  SRSAKLR   +T
Sbjct: 285 ---FELLTKKPILPSQEEIDENPASRSAKLRILRKT 317


>gi|326567260|gb|EGE17380.1| S-adenosyl-methyltransferase MraW [Moraxella catarrhalis 12P80B1]
 gi|326572872|gb|EGE22857.1| S-adenosyl-methyltransferase MraW [Moraxella catarrhalis CO72]
          Length = 330

 Score =  157 bits (397), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 110/315 (34%), Positives = 173/315 (54%), Gaps = 24/315 (7%)

Query: 20  HVPVLLEKVIAL------LNPAPGKV---ILDATFGAGGYSR---SFCKMGSNVIALDRD 67
           H  VLL + +A+      LN    KV    +DATFG GG+S+    +    + +   D+D
Sbjct: 13  HTTVLLPETVAMVLGVKQLNDVTSKVSGVYVDATFGRGGHSQLLLEYLAPEATLAVFDKD 72

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRG 124
           P A++  + ++     +  +   +F+ L   +   G+D   G++ DLGVSS Q+D G RG
Sbjct: 73  PEAIAVAK-SLAAQDTRIKVVHDSFAHLTKNLQALGIDKIDGLMADLGVSSPQLDDGTRG 131

Query: 125 FSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           FSF + G +DMRM  + G   S+ + + +  +L  +L   GEE+ + +IA AI K  Q+ 
Sbjct: 132 FSFMRDGVVDMRMDTTRGEPVSEWLQRVSADELADVLYEYGEERHSRKIARAI-KSMQN- 189

Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
            + +T+ L+ +I K  + +     HPAT+SFQA+RIF+NNE+ ++   L  +   LKAGG
Sbjct: 190 -YTSTRQLAEVI-KQAHPAWQKGKHPATQSFQAMRIFINNELGDVEAFLAQSIGVLKAGG 247

Query: 244 LLIVVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           +L V+SFHSLEDRL+K+F    S G+      +      P  F     K + P  ++V  
Sbjct: 248 MLAVISFHSLEDRLIKQFLQRHSRGQYEEDARLPIIPKRPKYFGK--PKRIGPCDQEVKA 305

Query: 303 NRRSRSAKLRAGMRT 317
           N R+RSA LR  +R+
Sbjct: 306 NPRARSAWLRGAVRS 320


>gi|325286918|ref|YP_004262708.1| Ribosomal RNA small subunit methyltransferase H [Cellulophaga
           lytica DSM 7489]
 gi|324322372|gb|ADY29837.1| Ribosomal RNA small subunit methyltransferase H [Cellulophaga
           lytica DSM 7489]
          Length = 298

 Score =  157 bits (397), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 110/307 (35%), Positives = 164/307 (53%), Gaps = 23/307 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H PVLL++ +  L+     V +D TFG GG+SR    ++G    +I  D+D  A++   +
Sbjct: 4   HNPVLLKESVDGLSIKEDGVYVDVTFGGGGHSREILSRLGEKGRLIGFDQDEDALANALD 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             R     F L    F  ++ ++   G   VDG++ D GVSS Q D  +RGFS +    L
Sbjct: 64  DDR-----FLLINENFRYIKQFLKFHGIRKVDGILGDFGVSSHQFDKAERGFSTRFDADL 118

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRMS    +SA DVVN     DL R+L   G+ + A+ +A+ I+  RQ    +TT  L 
Sbjct: 119 DMRMSQKNTVSAFDVVNNYEYNDLRRVLFQYGDLRSANAMANTIIDYRQEGEIKTTDQLK 178

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +++K +   K ++I    + +QA+RI VN EI+ + + L      L  GG L ++S+HS
Sbjct: 179 QVLKKFLPAFKEHKI--LAQIYQAIRIEVNQEIQVIKEFLEQTNDLLVEGGRLSLISYHS 236

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV---VVPTQEDVAFNRRSRSA 309
           LEDRLVK++   R+GK        P            KKV   +VP++E++A N R+RSA
Sbjct: 237 LEDRLVKRYI--RAGKFEGE----PEKDFYGNIDVPFKKVGGLIVPSKEEIAVNNRARSA 290

Query: 310 KLRAGMR 316
           KLR   R
Sbjct: 291 KLRIAER 297


>gi|304373145|ref|YP_003856354.1| Ribosomal RNA small subunit methyltransferase H [Mycoplasma
           hyorhinis HUB-1]
 gi|304309336|gb|ADM21816.1| Ribosomal RNA small subunit methyltransferase H [Mycoplasma
           hyorhinis HUB-1]
          Length = 298

 Score =  157 bits (397), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 104/310 (33%), Positives = 159/310 (51%), Gaps = 24/310 (7%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQE 76
           DH+PVLL++VI  LN     + LD T G GG+S    K      +I  D+D  A+   +E
Sbjct: 2   DHIPVLLDQVIDQLNIKEDGIYLDLTLGRGGHSSQILKKLTSGKLIVFDKDKQAIEQTKE 61

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +           + F      +       VDGV+ DLGVSS Q+D  +RGFS+ K   L
Sbjct: 62  KLLKISSNIEFIWSDFKDFDQELKKLQINKVDGVLLDLGVSSPQLDQANRGFSYNKQARL 121

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+     SA ++VN+ + + L  I    G+   A+ IA  IVK R   P   T +L 
Sbjct: 122 DMRMNQAQSFSAYELVNEYSKEKLVNIFTNYGQVPFANNIAENIVKLR---PITYTTELV 178

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I++++      + +PA   FQA+RI VN E+E L   L   +K LK  G L +++FHS
Sbjct: 179 DIIKQSLPNFVLRKKNPAKNVFQAIRIEVNQELESLNIFLSKIDKFLKKDGKLAIITFHS 238

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT----QEDVAFNRRSRS 308
           LED++VK +F          + ++  N     F++   K +V T    Q+++  N+R++S
Sbjct: 239 LEDKIVKNYF----------KQLLKQN-QTLFFETTQAKYLVKTTWANQKEIDNNKRAKS 287

Query: 309 AKLRAGMRTV 318
           AKLR   + +
Sbjct: 288 AKLRVLTKLI 297


>gi|121613568|ref|YP_001000389.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|167005332|ref|ZP_02271090.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|263445762|sp|A1VZ48|RSMH_CAMJJ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|87249530|gb|EAQ72490.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp.
           jejuni 81-176]
          Length = 310

 Score =  157 bits (396), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 106/302 (35%), Positives = 165/302 (54%), Gaps = 13/302 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           H+PVLL +V  +         LD T G GG+S +  K   ++  IA D+D  A+   ++ 
Sbjct: 5   HIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKNHPDLKFIACDQDQQALEFSKKR 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
           ++D+  + +  Q+ FS++ + +  K  + G++ D+GVSS Q+D  +RGFS   S  LDMR
Sbjct: 65  LKDFHNRITFVQSNFSEVLEKISHKEELRGILADIGVSSFQLDNNERGFSVN-SDFLDMR 123

Query: 137 MS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M+  S ISA +++N    + LT I    GE   A  IA  I   R   P ++ ++L  +I
Sbjct: 124 MNQNSKISAYEIINTYTKEQLTSIFKDYGELHDAHFIAEKICLERSKNPIKSAKELYQII 183

Query: 196 QKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
            K     +N+R I  AT +FQA+RI VN E++ L   L   E       +L ++SFHSLE
Sbjct: 184 GKG---KQNHRKISKATLAFQAIRIEVNQELKVLKDFLEHLENLKPKNCILAIISFHSLE 240

Query: 255 DRLVKKFFASRSGKVMAVRHMIPS---NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           DR+VK+FF   S   +    ++     N H ++ Q ITKK +  ++E++  N RS  AK+
Sbjct: 241 DRIVKQFFKKWSKNCICNEKIMRCECGNNH-SLGQIITKKAISASKEELLKNSRSSCAKM 299

Query: 312 RA 313
           RA
Sbjct: 300 RA 301


>gi|296113990|ref|YP_003627928.1| S-adenosyl-methyltransferase MraW [Moraxella catarrhalis RH4]
 gi|295921684|gb|ADG62035.1| S-adenosyl-methyltransferase MraW [Moraxella catarrhalis RH4]
          Length = 333

 Score =  157 bits (396), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 110/315 (34%), Positives = 173/315 (54%), Gaps = 24/315 (7%)

Query: 20  HVPVLLEKVIAL------LNPAPGKV---ILDATFGAGGYSR---SFCKMGSNVIALDRD 67
           H  VLL + +A+      LN    KV    +DATFG GG+S+    +    + +   D+D
Sbjct: 16  HTTVLLPETVAMVLGVKQLNDVTSKVSGVYVDATFGRGGHSQLLLEYLAPEATLAVFDKD 75

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRG 124
           P A++  + ++     +  +   +F+ L   +   G+D   G++ DLGVSS Q+D G RG
Sbjct: 76  PEAIAVAK-SLAAQDTRIKVVHDSFAHLTKNLQALGIDKIDGLMADLGVSSPQLDDGTRG 134

Query: 125 FSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           FSF + G +DMRM  + G   S+ + + +  +L  +L   GEE+ + +IA AI K  Q+ 
Sbjct: 135 FSFMRDGVVDMRMDTTRGEPVSEWLQRVSADELADVLYEYGEERHSRKIARAI-KSMQN- 192

Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
            + +T+ L+ +I K  + +     HPAT+SFQA+RIF+NNE+ ++   L  +   LKAGG
Sbjct: 193 -YTSTRQLAEVI-KQAHPAWQKGKHPATQSFQAMRIFINNELGDVEAFLAQSIGVLKAGG 250

Query: 244 LLIVVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           +L V+SFHSLEDRL+K+F    S G+      +      P  F     K + P  ++V  
Sbjct: 251 MLAVISFHSLEDRLIKQFLQRHSRGQYEEDARLPIIPKRPKYFGK--PKRIGPCDQEVKA 308

Query: 303 NRRSRSAKLRAGMRT 317
           N R+RSA LR  +R+
Sbjct: 309 NPRARSAWLRGAVRS 323


>gi|87123572|ref|ZP_01079423.1| methyltransferase [Synechococcus sp. RS9917]
 gi|86169292|gb|EAQ70548.1| methyltransferase [Synechococcus sp. RS9917]
          Length = 305

 Score =  157 bits (396), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 109/308 (35%), Positives = 166/308 (53%), Gaps = 31/308 (10%)

Query: 20  HVPVLLEKVIALL----NPAPGK-VILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVS 72
           HVPVL + ++  L    +P   + ++LDAT G GG+SR   +   G ++I LD+D  A +
Sbjct: 14  HVPVLADVLLQALQEHADPRWQQGLLLDATLGGGGHSRLLLEHYPGLHLIGLDQDSTARA 73

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              E +    E+  +    F+    Y P++ V  ++ DLGVSS Q+D  +RGFSF+ +GP
Sbjct: 74  AAAEHLLPCAERVRIVATNFAT---YRPEEPVALLLADLGVSSPQLDVAERGFSFRHNGP 130

Query: 133 LDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAI-VKRRQSAPFQTTQ 189
           LDMRM+  G   +A++++ +    DL  ++   GEE+ + RIA  I         +  T 
Sbjct: 131 LDMRMNPEGGGETAAELIARLEESDLADLIYAYGEERLSRRIARRIKADLAAQGAYAGTA 190

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L+  I       ++  RIHPATR+FQALRI +N+E+  L + L +A   L+ GGLL ++
Sbjct: 191 ALAYAIAGCYPPKARRGRIHPATRTFQALRIAINDELGVLDKLLSAAPDWLQPGGLLAII 250

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDR VK  F                       + IT++ +V ++++   N RSRS
Sbjct: 251 SFHSLEDRRVKTAFLQDQ-----------------RLERITRRPLVASEQEQERNPRSRS 293

Query: 309 AKLRAGMR 316
           AKLR   R
Sbjct: 294 AKLRIARR 301


>gi|295135641|ref|YP_003586317.1| S-adenosyl-methyltransferase MraW [Zunongwangia profunda SM-A87]
 gi|294983656|gb|ADF54121.1| S-adenosyl-methyltransferase MraW [Zunongwangia profunda SM-A87]
          Length = 298

 Score =  157 bits (396), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 107/306 (34%), Positives = 171/306 (55%), Gaps = 29/306 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76
           H PVLL++ +  LN  P  V +D TFG GG+SR   K +G +  + A D+D  A+    E
Sbjct: 4   HNPVLLKESVDGLNIKPDGVYVDVTFGGGGHSREILKRLGEHGKLFAFDQDTDALQNKIE 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             R     F+L    F  L+ ++   GV   DG++ D GVSS Q +  +RGFS + +  L
Sbjct: 64  DPR-----FTLINENFRFLKRFLRFYGVKKVDGILGDFGVSSHQFNEAERGFSTRFNAKL 118

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  S  +SA  V+N+ + + L  +     + K A ++A  IV  R++ P + ++DL+
Sbjct: 119 DMRMDQSNSLSAYQVINEYDEEQLKSLFYQYADLKNAPKLARIIVSERKNKPIENSEDLN 178

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            L++  ++  K N+I    + +QA+RI VN EIE L + L   E  ++  G + ++S+HS
Sbjct: 179 ELLKPHLFKGKENKI--LAQIYQAIRIEVNQEIEVLKEFLLQTEDLVEKNGRISLISYHS 236

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT---KKV---VVPTQEDVAFNRRS 306
           LEDRLVK++   RSG       +         + +I+   KKV   +VP++++++ N R+
Sbjct: 237 LEDRLVKRYI--RSG-------LFEGEPEKDFYGNISVPFKKVGGLIVPSKQEISENNRA 287

Query: 307 RSAKLR 312
           RSAKLR
Sbjct: 288 RSAKLR 293


>gi|307108403|gb|EFN56643.1| hypothetical protein CHLNCDRAFT_144447 [Chlorella variabilis]
          Length = 468

 Score =  157 bits (396), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 96/232 (41%), Positives = 127/232 (54%), Gaps = 24/232 (10%)

Query: 104 VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGI 162
           VD ++ DLG+SSMQ+D  DRGFSF + GPLDMRM   + +SA   VN     +L R++  
Sbjct: 233 VDAILLDLGISSMQVDTADRGFSFLRDGPLDMRMDPAAPLSAELAVNTWPEGELGRVIRE 292

Query: 163 LGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRI--------------- 207
            GEE+    IA  IV  R+ AP  TTQ L   I                           
Sbjct: 293 YGEERHWRGIARRIVAAREEAPITTTQQLVRAIGSPGGGGGGGGGRGRGRRSGGGDARFK 352

Query: 208 HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSG 267
           HPATR+FQALRI VN E++ +AQ L  A + L  GG L V++FHSLEDR+VK  F + +G
Sbjct: 353 HPATRTFQALRIAVNGELQSIAQALPDAIECLAPGGRLAVITFHSLEDRIVKWAFRAAAG 412

Query: 268 KVMAVRHMIPSNAHP-------AVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
              +    +PS   P       A  + +T++ V P++E+ A N RSRSAKLR
Sbjct: 413 MAPS-DEQLPSYCLPFEEAAAQASVRILTRRPVAPSEEEQAANVRSRSAKLR 463


>gi|156083547|ref|XP_001609257.1| S-adenosyl methyltransferase [Babesia bovis T2Bo]
 gi|154796508|gb|EDO05689.1| S-adenosyl methyltransferase, putative [Babesia bovis]
          Length = 420

 Score =  157 bits (396), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 116/333 (34%), Positives = 172/333 (51%), Gaps = 43/333 (12%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H PVLL++ + +L   P    LD T G GG++ +  K+ S    ++ALDRDP +V    +
Sbjct: 98  HEPVLLKEALDMLVIDPDGRYLDLTLGYGGHTEAILKLLSPKGVLVALDRDPESVYYTSK 157

Query: 77  TMRDY--KEQFSLFQATFSQLQ-----DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
            +  Y   +Q      TFS L      + +P K   G++ DLG+S+ Q++   RGF++  
Sbjct: 158 RLEQYVRSKQLVPVIGTFSNLNSVLESNNLPLKDYTGIIADLGISTHQLEDPKRGFAYNT 217

Query: 130 SGPLDMRMSC------------------SGISASDVVNQANVKDLTRILGILGEEKQASR 171
            GPLDMRMS                   +G  A  ++N+   +D+  +L   GEE +A  
Sbjct: 218 DGPLDMRMSNPLYDPFNPRDDIVKPNLDTGNIAFKLINKGREQDIAYVLREYGEEPRAII 277

Query: 172 IAHAIVKRRQS-APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQ 230
           IA  IV++RQ      TT  L  ++   V  +    +   +R FQALRI+VNNE++ELA 
Sbjct: 278 IARRIVEKRQRLGEIATTFQLRDIVLSCVRGNHKAGMKTLSRVFQALRIYVNNELDELAH 337

Query: 231 GLRSAEKALKAG-GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT 289
            L  A   L    G  +V+S+HSLEDR VK  F      +  ++ M  SN     ++ IT
Sbjct: 338 LLDHAPSILNPKQGRFVVISYHSLEDRAVKHAFTG----LQKLKTM--SNDS---YKVIT 388

Query: 290 KKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSI 322
           KK V PT E+   N+++RSAKLR     +ERS+
Sbjct: 389 KKCVTPTLEECTSNQKARSAKLRC----LERSM 417


>gi|15238896|ref|NP_196652.1| mraW methylase family protein [Arabidopsis thaliana]
 gi|8979725|emb|CAB96846.1| putative protein [Arabidopsis thaliana]
 gi|16604434|gb|AAL24223.1| AT5g10910/T30N20_180 [Arabidopsis thaliana]
 gi|28416479|gb|AAO42770.1| At5g10910/T30N20_180 [Arabidopsis thaliana]
 gi|332004225|gb|AED91608.1| mraW methylase family protein [Arabidopsis thaliana]
          Length = 434

 Score =  157 bits (396), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 112/335 (33%), Positives = 167/335 (49%), Gaps = 42/335 (12%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ- 75
           HVPV+L +V+ + +    +  +D T GA G+S S  +      N + +D DP A   G  
Sbjct: 95  HVPVMLGEVLDIFSSVRLRSFVDCTLGAAGHSSSIIQSHSELKNFVGMDVDPVARKLGHF 154

Query: 76  -------ETMRD--YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126
                   T++     + F   ++  +  Q  + D GVDG++ DLG+SSMQ++  +RGFS
Sbjct: 155 HIDSLMHPTLKASIVLKNFKYIKSVIADTQPELLDVGVDGILMDLGMSSMQVNNPERGFS 214

Query: 127 FQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
             + GPLDMRM     ++A D+VN     +L R+L   GEE     + + IVK R +   
Sbjct: 215 VLQEGPLDMRMDPQATLTAEDIVNSWPESELGRVLRDYGEESNWYLLQNRIVKARLNGGL 274

Query: 186 QTTQDLSSLIQKTVYFSKNNR---IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
            +T +L  LI+ T   S+  R   I  ATR FQ LRI VN+E++ L   L S+   L  G
Sbjct: 275 HSTGELVDLIRGTSPASRGGRQGWIKTATRVFQGLRIAVNDELKTLQNSLYSSFDVLAPG 334

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSG-----------------KVMAVRHMIPSNAHPAVF 285
           G L V+SFHSLEDR+VK+ F    G                 ++              + 
Sbjct: 335 GRLAVISFHSLEDRVVKQTFLDILGFQREEINGEGSSVKPERQIEERVEKELKEKEEWIK 394

Query: 286 QSI--------TKKVVVPTQEDVAFNRRSRSAKLR 312
           Q++        TK+ + P++E+   NRR+RSAKLR
Sbjct: 395 QTVIASKGVILTKRPITPSEEEERLNRRARSAKLR 429


>gi|294660427|ref|NP_853182.2| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Mycoplasma gallisepticum str. R(low)]
 gi|298286859|sp|Q7NB79|RSMH_MYCGA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|284812086|gb|AAP56750.2| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Mycoplasma gallisepticum str. R(low)]
 gi|284930664|gb|ADC30603.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Mycoplasma gallisepticum str. R(high)]
          Length = 313

 Score =  156 bits (395), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 105/304 (34%), Positives = 163/304 (53%), Gaps = 19/304 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H PVLL++VI  L      + LD T G GG+S +  K+    + +I  D+D  A++   +
Sbjct: 9   HYPVLLKEVIENLITTKDGIYLDLTIGFGGHSYNIIKILDQKARLIGFDQDLKAIAHCNQ 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
              ++    SL    F  L+ ++       +DG + DLGVSS Q+D  DRGFS+   G L
Sbjct: 69  LFSEF-NNVSLINDNFVNLKKHLQLMQIDNIDGCLIDLGVSSYQLDQADRGFSYHSLGRL 127

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  +  + A+ ++  + V +L +I+   GE K   R+  A+ K  +     T + + 
Sbjct: 128 DMRMDQNKAVDATKLIQNSTVSELVKIMKNYGEIKDPYRVVVALKKAFEKKELNTLE-VV 186

Query: 193 SLIQKTV-----YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            LI+K V     Y +K    HPA R FQALRI VNNE+E L + L      L  GG + +
Sbjct: 187 ELIKKHVNKAELYANK----HPARRYFQALRIAVNNELEVLEKLLSYLPSYLNKGGKIAI 242

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           ++FHSLE+++VKK F   +  + ++ ++  +N     + +   K + PTQ ++  NRRSR
Sbjct: 243 ITFHSLEEKIVKKVFRHLAS-ISSLNNLPINNELLKKYHNHFNKGLSPTQSELETNRRSR 301

Query: 308 SAKL 311
           SAKL
Sbjct: 302 SAKL 305


>gi|283798338|ref|ZP_06347491.1| S-adenosyl-methyltransferase MraW [Clostridium sp. M62/1]
 gi|291073921|gb|EFE11285.1| S-adenosyl-methyltransferase MraW [Clostridium sp. M62/1]
 gi|295092799|emb|CBK78906.1| S-adenosyl-methyltransferase MraW [Clostridium cf. saccharolyticum
           K10]
          Length = 317

 Score =  156 bits (395), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 101/303 (33%), Positives = 171/303 (56%), Gaps = 10/303 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76
           H  VLL + +  LN  P  + +D T G GG++    S    G  +I LD+D  A++   E
Sbjct: 5   HTSVLLYETVDSLNIRPDGIYVDGTLGGGGHASLVLSRLGEGGRLIGLDQDADAIAAATE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS-GP 132
            ++ Y ++ ++ +  +  +++ +   G   VDG+  DLGVSS Q+D  +RGF++++   P
Sbjct: 65  RLKPYGDRVTVIRTNYENIKEALASLGIAKVDGIYLDLGVSSYQLDTAERGFTYREDDAP 124

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM      +A D+VN  +  +L RI+   GE++ A  IA  IVK RQ    +T  +L
Sbjct: 125 LDMRMDQRRSETAKDIVNGYSEMELYRIIRDYGEDRFAKNIAKHIVKARQEKEIETAGEL 184

Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           + +I+  +    +    HPA R+FQA+RI +N E++ L   + +  + L  GG L V++F
Sbjct: 185 TEIIRAAIPAKIRATGGHPAKRTFQAIRIELNRELQVLENSIDTMIELLNPGGRLSVITF 244

Query: 251 HSLEDRLVK-KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK +F  + +         +      +  + +T+K ++P+ E+++ N+RS+SA
Sbjct: 245 HSLEDRIVKNRFRINENPCTCPPEFPVCMCGKKSRGRVVTRKPILPSDEELSANKRSKSA 304

Query: 310 KLR 312
           KLR
Sbjct: 305 KLR 307


>gi|256820422|ref|YP_003141701.1| S-adenosyl-methyltransferase MraW [Capnocytophaga ochracea DSM
           7271]
 gi|256582005|gb|ACU93140.1| S-adenosyl-methyltransferase MraW [Capnocytophaga ochracea DSM
           7271]
          Length = 304

 Score =  156 bits (395), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 112/304 (36%), Positives = 160/304 (52%), Gaps = 17/304 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76
           H PVLL + I  LN       +D TFG GG+SR   K +G N  + A D+D  A++    
Sbjct: 8   HTPVLLTQSIEGLNIKDNGTYVDVTFGGGGHSREILKHLGKNGRLYAFDQDADALN---N 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           T+ D  E+F+L Q  F  L+ Y+   GV   DGV+ D GVSS Q D  +RGFS +  G L
Sbjct: 65  TIDD--ERFTLIQQNFKYLRQYLRFYGVTQVDGVLGDFGVSSHQFDVAERGFSTRFEGTL 122

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+    +SA +VVN+    +LT I    GE K A  IA AI+  R+  P +   +L 
Sbjct: 123 DMRMNQQAPLSAQEVVNEYGEIELTHIFFQYGELKNAKAIARAIISYREQKPIRLGSELQ 182

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
             ++  +   K N++    + +QA+RI VN EIE L   L      +K  G + ++S+HS
Sbjct: 183 EAVKALLPKFKENKV--LAQIYQAIRIEVNAEIEALESFLLQLPAVVKPQGRISLISYHS 240

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR VK+F   R G++               F+ +   ++ P   ++A N R+RSAKLR
Sbjct: 241 LEDRCVKRFI--RDGQLEGAPEKDWYGNVSVPFKKVG-GLITPDDTEIAQNSRARSAKLR 297

Query: 313 AGMR 316
              R
Sbjct: 298 IAER 301


>gi|161870663|ref|YP_001599836.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis 053442]
 gi|161596216|gb|ABX73876.1| S-adenosyl-methyltransferase mraW [Neisseria meningitidis 053442]
          Length = 264

 Score =  156 bits (395), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 94/230 (40%), Positives = 135/230 (58%), Gaps = 3/230 (1%)

Query: 90  ATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM-SCSGISASDVV 148
           A+F    D +    VDG +FDLG+SS QID G RGFSF+   PLDMRM +  G+SA++ +
Sbjct: 20  ASFQTALDGLGIGKVDGALFDLGISSPQIDDGSRGFSFRFDAPLDMRMDTMRGMSAAEWI 79

Query: 149 NQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIH 208
             A+ +DL  ++   GEE+ + +IA AIV +R  +P  TT+ L+ ++ + V   +  +  
Sbjct: 80  AVASEQDLHEVIKNYGEERFSRQIARAIVAQRAESPIDTTRKLAQIVAQNVRTRERGQ-D 138

Query: 209 PATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGK 268
           PATR+FQA+RIF+N E+EE+   L      LK GG L V++FHSLEDR+VK+F    S  
Sbjct: 139 PATRTFQAIRIFINRELEEVGAVLPQVMCRLKEGGRLAVIAFHSLEDRIVKQFVKKYSQH 198

Query: 269 VMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
               R      A  P     I  + + P + ++A N R+RSA LR   RT
Sbjct: 199 APLPRWAAVREADLPEPPLKIAGRALKPGEAEIAANPRARSAVLRVAERT 248


>gi|24214745|ref|NP_712226.1| S-adenosyl-methyltransferase [Leptospira interrogans serovar Lai
           str. 56601]
 gi|42559478|sp|Q8F4J6|RSMH_LEPIN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|24195744|gb|AAN49244.1| S-adenosyl-methyltransferase [Leptospira interrogans serovar Lai
           str. 56601]
          Length = 334

 Score =  156 bits (395), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 119/336 (35%), Positives = 179/336 (53%), Gaps = 38/336 (11%)

Query: 1   MESKSCKTMS--------SAIHHTI-GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYS 51
           MES  C+T++          +H+++ G  +  + ++     +P    + LD T G GG+S
Sbjct: 1   MES-PCRTITLEKNGTSLEPVHYSVQGKEILQIFKENFQKEDPV---LFLDGTAGEGGHS 56

Query: 52  RSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL-QDYVPDKGVD--- 105
             F K    S +I  DRDP  +S     + D+ E+    Q  FS++ Q  +   G+D   
Sbjct: 57  FLFLKEFPNSRIILCDRDPIMLSRALTRLSDFSERVVSIQTNFSEINQKLLTSYGIDQTP 116

Query: 106 -GVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGIL 163
            G++ DLG+S+  +    RGFSF++S PLDMR++  SG SA +++N      L  I    
Sbjct: 117 QGILLDLGISTFHLFHSGRGFSFRESEPLDMRLNPNSGQSAEEILNIYPKDRLMNIFYTY 176

Query: 164 GEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV--YFSKNNRIHPATRSFQALRIFV 221
           GEE+ + +IA  IV+ R+     TT +L++L+ K +   F    R HPATR FQALRI V
Sbjct: 177 GEERWSKKIAEVIVETRKQNSISTTFELANLVSKIIPRKFWPPGR-HPATRIFQALRIEV 235

Query: 222 NNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH 281
           N E+  +  GL+     L+ GG++ V+SFHSLEDR+VK  F          R     N  
Sbjct: 236 NQELAHIENGLKLLLDLLRLGGVIQVISFHSLEDRIVKNSF----------RDYAKQNG- 284

Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
              F+ +TKK + P+QE++  N  SRSAKLR   +T
Sbjct: 285 ---FELLTKKPIFPSQEEIDENPASRSAKLRILRKT 317


>gi|223040364|ref|ZP_03610639.1| S-adenosyl-methyltransferase MraW [Campylobacter rectus RM3267]
 gi|222878322|gb|EEF13428.1| S-adenosyl-methyltransferase MraW [Campylobacter rectus RM3267]
          Length = 310

 Score =  156 bits (394), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 102/300 (34%), Positives = 165/300 (55%), Gaps = 12/300 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           HVPVLL++V+         VI+D T G GG+S +  +   NV  IA D+D  A++   E 
Sbjct: 5   HVPVLLDEVLRAFEGIKSGVIVDCTLGYGGHSGAILEQNQNVNLIACDQDEEAINFSSER 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
           ++ + ++  +F++ FS++ + +    + G++ D+GVSS+Q+D  +RGF   KS  LDMRM
Sbjct: 65  LKKFGQRAQIFKSKFSEILNKIEQTQIRGILADIGVSSLQLDKNERGFGL-KSENLDMRM 123

Query: 138 SCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
                 SA DVVN  + ++L RI    GE    ++ A  IV+ RQ+   ++ + L+ +I 
Sbjct: 124 DAQAKFSAYDVVNSYSARELERIFEGYGELPNPAKFAAKIVEARQNGEIKSAERLAQIIG 183

Query: 197 -KTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
            K V    N R +  AT +FQA+RI VNNE+ EL   L+  E +     ++ ++ FHSLE
Sbjct: 184 LKGV----NGRSVSAATLAFQAIRIEVNNELGELQNLLQGIEDSQIDECVVAIIGFHSLE 239

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           DR+VK  F   +   +     +        A+ + ++KK + P+  +V  N RS  AK+R
Sbjct: 240 DRIVKNKFKQWAQSCICPPQALKCTCGGDNALGKIVSKKAITPSAAEVKANPRSSCAKMR 299


>gi|148651949|ref|YP_001279042.1| S-adenosyl-methyltransferase MraW [Psychrobacter sp. PRwf-1]
 gi|262825202|sp|A5WBQ1|RSMH_PSYWF RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|148571033|gb|ABQ93092.1| S-adenosyl-methyltransferase MraW [Psychrobacter sp. PRwf-1]
          Length = 339

 Score =  156 bits (394), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 105/303 (34%), Positives = 160/303 (52%), Gaps = 15/303 (4%)

Query: 23  VLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQETMR 79
           VL EK +    P    + +DATFG GG+S+   ++    + +   D+DP A+    +   
Sbjct: 31  VLGEKSLNDNTPKHDGIYVDATFGRGGHSKLLLNYLSDDAKLFVFDKDPEAIDVANDLAA 90

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
           + K +  +   +F+ +   +  +GV   DG++ DLGVSS Q+D G RGFSF + G +DMR
Sbjct: 91  EDK-RVIVVHDSFADMTQCLNSRGVSQVDGIMADLGVSSPQLDDGSRGFSFMRDGAIDMR 149

Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M  S G    + +   + + L  +L   GEE+ + RIA AI    Q   + +T +L+ +I
Sbjct: 150 MDTSRGQPVGEWLQTVDEETLADVLYDFGEERHSRRIARAIKGMTQ---YTSTLELAEVI 206

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
            K  +       HPAT+SFQA+RIF+NNE+ ++   L  +   L   G L V+SFHSLED
Sbjct: 207 -KQAHPKWQKGKHPATQSFQAMRIFINNELGDIDSFLAQSLTLLAPQGQLAVISFHSLED 265

Query: 256 RLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           R +K+F    S G+     ++      P  F     K + P++ +V  N RSRSA LR  
Sbjct: 266 RRIKQFLQRHSRGQYPEDENLPMPPQRPRYFSK--PKRIAPSKAEVTVNNRSRSAWLRVA 323

Query: 315 MRT 317
            RT
Sbjct: 324 TRT 326


>gi|330723232|gb|AEC45602.1| Ribosomal RNA small subunit methyltransferase H [Mycoplasma
           hyorhinis MCLD]
          Length = 298

 Score =  156 bits (394), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 104/310 (33%), Positives = 158/310 (50%), Gaps = 24/310 (7%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQE 76
           DH+PVLL++VI  LN     + LD T G GG+S    K      +I  D+D  A+   +E
Sbjct: 2   DHIPVLLDQVIDQLNIKEDGIYLDLTLGRGGHSSQILKKLTSGKLIVFDKDKQAIEQTKE 61

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +           + F      +       VDGV+ DLGVSS Q+D  +RGFS+ K   L
Sbjct: 62  KLLKISSNIEFIWSDFKDFDQELKKLQINKVDGVLLDLGVSSPQLDQANRGFSYNKQARL 121

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+     SA ++VN+ + + L  I    G+   A+ IA  IVK R   P   T +L 
Sbjct: 122 DMRMNQAQSFSAYELVNEYSKEKLVNIFTNYGQVPFANNIAEDIVKLR---PITYTTELV 178

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I+ ++      + +PA   FQA+RI VN E+E L   L   +K LK  G L +++FHS
Sbjct: 179 DIIKHSLPNFVLRKKNPAKNVFQAIRIEVNQELESLNIFLSKIDKFLKKDGKLAIITFHS 238

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT----QEDVAFNRRSRS 308
           LED++VK +F          + ++  N     F++   K +V T    Q+++  N+R++S
Sbjct: 239 LEDKIVKNYF----------KQLLKQN-QTLFFETTQAKYLVKTTWANQKEIDNNKRAKS 287

Query: 309 AKLRAGMRTV 318
           AKLR   + +
Sbjct: 288 AKLRVLTKLI 297


>gi|119599130|gb|EAW78724.1| hCG2022166, isoform CRA_b [Homo sapiens]
          Length = 333

 Score =  156 bits (394), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 103/323 (31%), Positives = 155/323 (47%), Gaps = 88/323 (27%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCGQET 77
           H+PV++++V+  L+P  G++ LD TFG+GG++++  +  S+++  ALDRDP A +  +  
Sbjct: 72  HIPVMVDEVVHCLSPQKGQIFLDMTFGSGGHTKAILQKESDIVLYALDRDPTAYALAEHL 131

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              Y +Q       FSQ +  +   GV     DGV+ DLG SSMQ+D  +RG S      
Sbjct: 132 SELYPKQIRAMLGQFSQAEALLMKAGVQPGTFDGVLMDLGCSSMQLDTPERGSSL----- 186

Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
                                                          R+  P     D  
Sbjct: 187 -----------------------------------------------RKDGPLDIRMD-- 197

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            L+Q++ Y         AT++FQALRIFVNNE+ EL  GL++A+K L+ GG L+ +SFHS
Sbjct: 198 DLLQQSTYI--------ATKTFQALRIFVNNELNELYTGLKTAQKFLRLGGRLVALSFHS 249

Query: 253 LEDRLVKKFFASRSGKV---MAVRHMIPSNAH----------------PAVFQSITKKVV 293
           LEDR+VK+F    S      ++VR  +   +                 P +++ I KKV+
Sbjct: 250 LEDRIVKRFLLGISMTERFNLSVRQQVMKTSQLGSDHENTEEVSMRRAPLMWELIHKKVL 309

Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316
            P  +DV  N R RSAKLRA ++
Sbjct: 310 SPQDQDVQDNPRGRSAKLRAAIK 332


>gi|187918180|ref|YP_001883743.1| S-adenosyl-methyltransferase MraW [Borrelia hermsii DAH]
 gi|263445877|sp|B2S017|RSMH_BORHD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|119861028|gb|AAX16823.1| S-adenosyl-methyltransferase MraW [Borrelia hermsii DAH]
          Length = 297

 Score =  156 bits (394), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 101/308 (32%), Positives = 165/308 (53%), Gaps = 24/308 (7%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCG 74
           H PVLL+++I LL       G + +D T G GG+S +  +   N  VI ++RD   ++  
Sbjct: 6   HTPVLLDEIINLLEIVYVNDGFIFVDCTLGEGGHSSAVLRKYQNISVIGIERDDIILNRA 65

Query: 75  QETMRDYKEQFSLFQATFSQL-QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           +E + ++K + S F A F     +Y      + ++ DLG+S        RGFSF +   L
Sbjct: 66  KEFLVEFKGKVSYFNAWFDDFFSEYSLSSKANFILADLGISMFHYKMSGRGFSFFEDERL 125

Query: 134 DMRMS--CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           DMR++    G+SA D+VN  +   L  ++   G E  + RI  +I++ R+    +T+++L
Sbjct: 126 DMRLNPGAGGLSAYDIVNTFDKVRLENLIYEFGGEHYSKRIVSSILEYRKIKKIKTSREL 185

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             +I K  Y     +I+PAT++FQALRI+VN+E+  L + L     +L   G+L +++FH
Sbjct: 186 QGIISKA-YPRIKLKINPATKTFQALRIYVNDELFRLKRSLPLWVGSLSRNGILAIITFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLED++VK+FF   S +   +               +TKK ++ + E+   N  SRSAKL
Sbjct: 245 SLEDKIVKEFFKGLSKEQYCI---------------LTKKPIIASFEEKRCNNASRSAKL 289

Query: 312 RAGMRTVE 319
           RA  +  E
Sbjct: 290 RAIRKLYE 297


>gi|291522688|emb|CBK80981.1| S-adenosyl-methyltransferase MraW [Coprococcus catus GD/7]
          Length = 313

 Score =  156 bits (394), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 99/315 (31%), Positives = 168/315 (53%), Gaps = 21/315 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQE 76
           H  VLL + I  L+     + +D T G GG++ +   ++G    +I +D+D  A+    E
Sbjct: 5   HYSVLLNETIEQLDIKENGIYVDGTLGGGGHASAVLQRLGETGRLIGIDQDAAAIEAAGE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  + ++ ++ ++ +S +   + D    GVDG+V DLGVSS Q+D  +RGF++++   L
Sbjct: 65  RLAPFGDKVTIVRSNYSAMPQVLADLGIHGVDGIVLDLGVSSYQLDTVERGFTYREDTVL 124

Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM      +A D+VN     +L  ++   GE+K A  IA  IV  R+  P +TT +L+
Sbjct: 125 DMRMDQRQTKTARDIVNDYTETELFHMIRDYGEDKFARNIAKHIVMAREKKPIETTGELN 184

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  +    +    HP+ +++QA+RI +N+E++ L   L      L   G + V++FH
Sbjct: 185 DIIRAAIPAKVRAKGGHPSKKTYQAIRIELNHELDVLKNTLDQMIDLLNDHGRICVITFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF-------QSITKKVVVPTQEDVAFNR 304
           SLEDR+VK  F +        R      + P          + IT+K ++P++E++  N 
Sbjct: 245 SLEDRIVKNIFNTNE------RPCTCPPSFPVCVCGKKSKGRVITRKPILPSEEELEVNS 298

Query: 305 RSRSAKLRAGMRTVE 319
           RS+SAKLR   R  E
Sbjct: 299 RSKSAKLRVFERIRE 313


>gi|283956102|ref|ZP_06373589.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|283792422|gb|EFC31204.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp.
           jejuni 1336]
          Length = 310

 Score =  156 bits (394), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 106/302 (35%), Positives = 164/302 (54%), Gaps = 13/302 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           H+PVLL +V  +         LD T G GG+S +  K   ++  IA D+D  A+   ++ 
Sbjct: 5   HIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKNHPDLKFIACDQDQQALEFSKKR 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
           ++D+  + +  Q+ FS++ + +  K  + G++ D+GVSS Q+D  +RGFS   S  LDMR
Sbjct: 65  LKDFHNRITFIQSNFSEVLEKISHKEELRGILADIGVSSFQLDNNERGFSVN-SDFLDMR 123

Query: 137 MS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M+  S ISA +++N    + LT I    GE   A  IA  I   R   P ++ ++L  +I
Sbjct: 124 MNQNSKISAYEIINTYTKEQLTSIFKDYGELHDAHFIAEKICLERSKNPIKSAKELYQII 183

Query: 196 QKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
            K     +N+R I  AT +FQA+RI VN E++ L   L   E       +L ++SFHSLE
Sbjct: 184 GKG---KQNHRKISKATLAFQAIRIEVNQELKVLKDFLGHLENLKPKNCILTIISFHSLE 240

Query: 255 DRLVKKFFASRSGKVMAVRHMIPS---NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           DR+VK FF   S   +    ++     N H ++ Q ITKK +  ++E++  N RS  AK+
Sbjct: 241 DRIVKNFFKKWSKNCICDEKIMRCECGNNH-SLGQIITKKAISASKEELLKNSRSSCAKM 299

Query: 312 RA 313
           RA
Sbjct: 300 RA 301


>gi|225011606|ref|ZP_03702044.1| S-adenosyl-methyltransferase MraW [Flavobacteria bacterium
           MS024-2A]
 gi|225004109|gb|EEG42081.1| S-adenosyl-methyltransferase MraW [Flavobacteria bacterium
           MS024-2A]
          Length = 299

 Score =  156 bits (394), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 111/301 (36%), Positives = 161/301 (53%), Gaps = 19/301 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQE 76
           H PVLL+  +  L+  P  + +DATFG GG+SR    ++G    ++  D+D  A++   E
Sbjct: 5   HNPVLLQASLEGLHIRPNGIYVDATFGGGGHSRVILDRLGKEGRLLGFDQDVDALANNIE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVP----DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             R     F    A FS L  Y+     DK VDG++ D GVSS Q D  +RGFS +    
Sbjct: 65  DSR-----FDFVAANFSHLTQYLKYHKIDK-VDGILADFGVSSHQFDTQERGFSIRTDAR 118

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+ S  + A  V+N  +   L  +    GE K +  I+  IV+ R+     TT DL
Sbjct: 119 LDMRMNQSQDLDAHKVINTYSEDKLRMLFFAYGELKNSKTISRTIVEAREECEIITTMDL 178

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             L++  V     N+I    + FQALRI VN+E+E L   L  A + L  GG L+ +S+H
Sbjct: 179 IELVKPLVPKRIENKI--LAQLFQALRIEVNDELEALKSFLIQANEVLVQGGRLVCISYH 236

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDRLVK++F + S      +    +   P   + I  K+++P+ ++V  N R+RSAKL
Sbjct: 237 SLEDRLVKRYFQTGSFDGELEKDFYGNPIKP--LKKIG-KLIIPSSDEVKENGRARSAKL 293

Query: 312 R 312
           R
Sbjct: 294 R 294


>gi|78187960|ref|YP_376003.1| methyltransferase [Chlorobium luteolum DSM 273]
 gi|123582409|sp|Q3B121|RSMH_PELLD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|78167862|gb|ABB24960.1| methyltransferase [Chlorobium luteolum DSM 273]
          Length = 327

 Score =  155 bits (393), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 107/321 (33%), Positives = 173/321 (53%), Gaps = 29/321 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--------GSNVIALDRDPFAV 71
           H PVLL + +  L   PG + +D T G GG+S +  +         GS ++ +D+D  A+
Sbjct: 9   HDPVLLHECVDALVRGPG-LYVDGTLGGGGHSMAILRALESGGWLEGSLLVGIDQDDEAL 67

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD--------GVVFDLGVSSMQIDCGDR 123
                 +  Y  +    +  F  +      + V          ++ DLGVSS QID  +R
Sbjct: 68  HEAGSRLAAYPGRAVAVKGNFQDIARLASREAVQKGLEPRARAILLDLGVSSRQIDRAER 127

Query: 124 GFSFQKSGPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR-Q 181
           GFS+ ++GPLDMRM S +  +A+D++N A+ ++L  I    GEE ++  IA A++  R +
Sbjct: 128 GFSYMRTGPLDMRMDSSASTTAADILNDADERELAAIFFRYGEEPRSRAIARAVIAARMK 187

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
             P  +T+DL+ +++  V+  +   I   +R FQALRI VN E++ L + L      L  
Sbjct: 188 HGPLSSTEDLADIVRSVVH-GRQPSIRSLSRVFQALRIAVNRELDVLQRVLEDGVSVLDE 246

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSG-----KVMAVRHMIPSNAHPAVFQSITKKVVVPT 296
           GG + V+S+HSLEDR+VK++FA++S      K + +R  +           +T+K VV +
Sbjct: 247 GGRIAVISYHSLEDRMVKQYFAAQSKCDWGPKGVGLREPLSRG----TLVPVTRKAVVAS 302

Query: 297 QEDVAFNRRSRSAKLRAGMRT 317
           +++V  N RSRSAKLR   +T
Sbjct: 303 EDEVRVNPRSRSAKLRVAEKT 323


>gi|38047597|gb|AAR09701.1| similar to Drosophila melanogaster CG14683 [Drosophila yakuba]
          Length = 251

 Score =  155 bits (393), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 95/253 (37%), Positives = 143/253 (56%), Gaps = 21/253 (8%)

Query: 37  GKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMR--DYKEQFSLFQATF 92
           G    D TFGAGG++R   +    + V ALDRDP A    ++     ++K +       F
Sbjct: 1   GGTYFDMTFGAGGHTRRLLEKCPEAKVYALDRDPLAHQLARDMSESEEFKGRLIPLLGKF 60

Query: 93  SQLQDYVPDKG-----VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS---CSGISA 144
           S L     + G     VDG++FD G SSMQ D   RGFS  + GPLDMRM      G++A
Sbjct: 61  SDLPKLFKEHGLAKNSVDGMLFDFGCSSMQFDEAVRGFSISRDGPLDMRMDGGHSGGVTA 120

Query: 145 SDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA-PFQTTQDLSSLIQKTV-YFS 202
           +DV+      DL +IL + GEEK A +IA  ++  R +    +TT+ L+ +I+  +   S
Sbjct: 121 ADVLANVEEGDLVKILRMYGEEKAAKKIARGLIDARNALFKIETTKQLADIIENIMDGGS 180

Query: 203 KNNRI----HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258
           + +++    H AT++FQA+RIFVNNE+ E+  G+  A + L+  G L+ ++FHSLED +V
Sbjct: 181 RKDKLRRHAHSATKTFQAIRIFVNNELNEINYGMVLANEILRVDGRLVTITFHSLEDTIV 240

Query: 259 KKFFASRSGKVMA 271
           K+     +G V+A
Sbjct: 241 KRHI---NGNVLA 250


>gi|315223498|ref|ZP_07865354.1| S-adenosyl-methyltransferase MraW [Capnocytophaga ochracea F0287]
 gi|314946533|gb|EFS98525.1| S-adenosyl-methyltransferase MraW [Capnocytophaga ochracea F0287]
          Length = 304

 Score =  155 bits (393), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 112/304 (36%), Positives = 159/304 (52%), Gaps = 17/304 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76
           H PVLL + I  LN       +D TFG GG+SR   K +G N  + A D+D  A++    
Sbjct: 8   HTPVLLTQSIEGLNIKDNGTYVDVTFGGGGHSREILKHLGKNGRLYAFDQDADALN---N 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           T+ D  E+F+L Q  F  L+ Y+   GV   DGV+ D GVSS Q D   RGFS +  G L
Sbjct: 65  TIDD--ERFTLIQQNFKYLRQYLRFYGVTQVDGVLGDFGVSSHQFDVAQRGFSTRFEGTL 122

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+    +SA +VVN+    +LT I    GE K A  IA AI+  R+  P +   +L 
Sbjct: 123 DMRMNQQAPLSAQEVVNEYGEIELTHIFFQYGELKNAKAIARAIISYREQKPIRLGSELQ 182

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
             ++  +   K N++    + +QA+RI VN EIE L   L      +K  G + ++S+HS
Sbjct: 183 EAVKTLLPKFKENKV--LAQIYQAIRIEVNAEIEALESFLLQLPAVVKPQGRISLISYHS 240

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR VK+F   R G++               F+ +   ++ P   ++A N R+RSAKLR
Sbjct: 241 LEDRCVKRFI--RDGQLEGAPEKDWYGNVSVPFKKVG-GLITPDDTEIAQNSRARSAKLR 297

Query: 313 AGMR 316
              R
Sbjct: 298 IAER 301


>gi|78185678|ref|YP_378112.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. CC9902]
 gi|123581009|sp|Q3AW00|RSMH_SYNS9 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|78169972|gb|ABB27069.1| methyltransferase [Synechococcus sp. CC9902]
          Length = 294

 Score =  155 bits (393), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 110/305 (36%), Positives = 160/305 (52%), Gaps = 28/305 (9%)

Query: 20  HVPVLLEKVIALLNPAP--GKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQ 75
           HVPVL + V+A     P    V++DAT G GG+S    +   G  +I LD+DP A +   
Sbjct: 6   HVPVLADAVVAGAEHLPHHNGVLIDATLGGGGHSALLLERFPGLRLIGLDQDPTARAAAA 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           E +  + ++  +    F+    Y P   V  V+ DLGVSS Q+D  +RGFSF+  GPLDM
Sbjct: 66  ERLAAFADRVEILATNFAS---YTPPAPVLMVLADLGVSSPQLDVAERGFSFRLDGPLDM 122

Query: 136 RMS--CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI-VKRRQSAPFQTTQDLS 192
           RM+    G +A++++++     L  ++   GEE+ + RIA  I        P++ T  L+
Sbjct: 123 RMNPGSDGETAAELIDRLEENALADLIYGYGEERLSRRIARRIKADLAAQGPYEGTAALA 182

Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             +       ++  RIHPATR+FQALRI VN+E+  L + L+ A   L+ GG++ V+SFH
Sbjct: 183 YAVAGCYPPKARRGRIHPATRTFQALRIAVNDELAVLDRLLQQAPDWLETGGVMGVISFH 242

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR VK  F                       + IT+K  V T ++   N RSRSAK 
Sbjct: 243 SLEDRRVKTAFLQDE-----------------RLERITRKPTVATDDEQNRNPRSRSAKW 285

Query: 312 RAGMR 316
           R   R
Sbjct: 286 RLARR 290


>gi|218461400|ref|ZP_03501491.1| S-adenosyl-methyltransferase MraW [Rhizobium etli Kim 5]
          Length = 216

 Score =  155 bits (392), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 95/220 (43%), Positives = 126/220 (57%), Gaps = 10/220 (4%)

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEK-----QASRIAHAIVKRRQS 182
           QK+GPLDMR S +    S        +     L +    K        R   A+ K+   
Sbjct: 1   QKNGPLDMRKSAARHFGSRRCQTRQGRRSHPHLSVFWARKAKRRVSRMRSRSAVPKK--- 57

Query: 183 APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
            PF+TT+DL+ LI+        ++IHPATR FQALRIFVN+E+ ELAQ L +AE+ALK G
Sbjct: 58  -PFETTRDLAGLIELVTPRKMKDKIHPATRVFQALRIFVNDELGELAQALFAAERALKPG 116

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G L+VV+FHSLEDR+VKKFF+ R+GK    RH+  ++   A F  I K +V  ++ +   
Sbjct: 117 GRLVVVTFHSLEDRIVKKFFSDRAGKATGSRHLPAAHERAATFTVIGKPMVSASEAEAEV 176

Query: 303 NRRSRSAKLRAGMRT-VERSIEDDSFVHLPRLPTLSQFRG 341
           N R+RSAKLRAG+RT       D S    P L TL +  G
Sbjct: 177 NPRARSAKLRAGLRTDAATEPADMSLFGFPNLATLGKLGG 216


>gi|76798783|ref|ZP_00780998.1| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae 18RS21]
 gi|77405004|ref|ZP_00782105.1| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae H36B]
 gi|77410569|ref|ZP_00786929.1| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae CJB111]
 gi|22533299|gb|AAM99192.1|AE014204_10 conserved hypothetical protein TIGR00006 [Streptococcus agalactiae
           2603V/R]
 gi|76585867|gb|EAO62410.1| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae 18RS21]
 gi|77163284|gb|EAO74235.1| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae CJB111]
 gi|77176443|gb|EAO79211.1| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae H36B]
          Length = 298

 Score =  155 bits (392), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 100/297 (33%), Positives = 163/297 (54%), Gaps = 12/297 (4%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQETMRDYKE--QF 85
           +L+  P  + +DAT G  G+S     ++G +  + A D+D  A+      ++ Y +  Q 
Sbjct: 1   MLDIKPDGIYVDATLGGAGHSEYLLSQLGPDGHLYAFDQDQKAIDNAHIRLKKYVDTGQV 60

Query: 86  SLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-G 141
           +  +  F  L   +   GV   +G+ +DLGVSS Q+D  +RGFS+++  PLDMRM+    
Sbjct: 61  TFIKDNFRNLSSNLKALGVSEINGICYDLGVSSPQLDERERGFSYKQDAPLDMRMNREQS 120

Query: 142 ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYF 201
           ++A DVVN  +  DL RI    GE+K + +IA  I + R      TT +L+ +I+ +   
Sbjct: 121 LTAYDVVNTYSYHDLVRIFFKYGEDKFSKQIARKIEQVRAEKTISTTTELAEIIKSSKSA 180

Query: 202 SK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKK 260
            +   + HPA + FQA+RI VN+E+    + ++ A   L   G + V++FHSLEDRL K+
Sbjct: 181 KELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDLLAVDGRISVITFHSLEDRLTKQ 240

Query: 261 FFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
            F   S  +V      IP +  P + + + +K ++P+QE++  N R+ SAKLR   R
Sbjct: 241 LFKEASTVEVPKGLPFIPDDLQPKM-ELVNRKPILPSQEELEANNRAHSAKLRVARR 296


>gi|332292526|ref|YP_004431135.1| S-adenosyl-methyltransferase MraW [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332170612|gb|AEE19867.1| S-adenosyl-methyltransferase MraW [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 301

 Score =  155 bits (391), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 105/303 (34%), Positives = 162/303 (53%), Gaps = 23/303 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMG--SNVIALDRDPFAVSCGQE 76
           H PVLL++ +  LN  P  V +D TFG GG+SR    ++G    +   D+D   V   + 
Sbjct: 7   HNPVLLKETVDGLNIKPDGVYVDVTFGGGGHSREILSRLGPEGKLYGFDQD---VDAQEN 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + D  E+F+L    F  ++ ++   GV   DG++ D GVSS Q D  +RGFS +    L
Sbjct: 64  IIED--ERFTLIPENFRYIKRFMRFHGVKKVDGILGDFGVSSHQFDVAERGFSTRFESDL 121

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+    +SA +V+N    +DL ++    GE + A ++A  IV+ R S   +T++ L 
Sbjct: 122 DMRMNQKDTLSAYNVINDYEEEDLRQVFWQYGELRNAPKLASTIVQERNSQFIKTSEHLK 181

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            ++    +  K+       + +QA+RI VN EIE L + L   E+ L  GG + ++S+HS
Sbjct: 182 KVL--APFLPKHREHKILAQIYQAIRIEVNQEIEVLKEFLMQTEQLLDTGGRISLISYHS 239

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV---VVPTQEDVAFNRRSRSA 309
           LEDRLVK++   RSG         P       F+   KKV   ++P  +++  N R+RSA
Sbjct: 240 LEDRLVKRYI--RSGMFEGE----PEKDMYGNFEVPFKKVGKLIIPDSKEIKLNNRARSA 293

Query: 310 KLR 312
           KLR
Sbjct: 294 KLR 296


>gi|86151694|ref|ZP_01069908.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|315124195|ref|YP_004066199.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|85841323|gb|EAQ58571.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|315017917|gb|ADT66010.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
          Length = 310

 Score =  155 bits (391), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 106/302 (35%), Positives = 164/302 (54%), Gaps = 13/302 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           H+PVLL +V  +         LD T G GG+S +  K   ++  IA D+D  A+   ++ 
Sbjct: 5   HIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKNHPDLKFIACDQDQQALEFSKKR 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
           ++D+  + +  Q+ FS++ + +  K  + G++ D+GVSS Q+D  +RGFS   S  LDMR
Sbjct: 65  LKDFHNRITFVQSNFSEVLEKISHKEELRGILADIGVSSFQLDNNERGFSVN-SDFLDMR 123

Query: 137 MS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M+  S ISA +++N    + LT I    GE   A  IA  I   R   P ++ ++L  +I
Sbjct: 124 MNQNSKISAYEIINTYTKEQLTSIFKDYGELHDAHFIAEKICLERSKNPIKSAKELYQII 183

Query: 196 QKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
            K     +N+R I  AT +FQA+RI VN E++ L   L   E       +L ++SFHSLE
Sbjct: 184 GKG---KQNHRKISKATLAFQAIRIEVNQELKVLKDFLGHLENLKPKNCILAIISFHSLE 240

Query: 255 DRLVKKFFASRSGKVMAVRHMIPS---NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           DR+VK FF   S   +    ++     N H ++ Q ITKK +  ++E++  N RS  AK+
Sbjct: 241 DRIVKNFFKKWSKNCICDEKIMRCECGNNH-SLGQIITKKAISASKEELLKNSRSSCAKM 299

Query: 312 RA 313
           RA
Sbjct: 300 RA 301


>gi|284931424|gb|ADC31362.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Mycoplasma gallisepticum str. F]
          Length = 313

 Score =  155 bits (391), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 110/308 (35%), Positives = 167/308 (54%), Gaps = 27/308 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H PVLL++VI  L      + LD T G GG+S +  K+    + +I  D+D  A++  ++
Sbjct: 9   HYPVLLKEVIENLITIKDGIYLDLTIGFGGHSYNIIKILDQKARLIGFDQDLQAIAHCKQ 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVP----DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              ++    SL    F  L+ ++     DK +DG + DLGVSS Q+D  DRGFS+   G 
Sbjct: 69  LFSEF-NNVSLINDNFVNLKKHLQLMQIDK-IDGCLIDLGVSSYQLDRADRGFSYHSLGR 126

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  +  + A+ ++  + V +L +I+   GE K   R+  A+ K  +     T + +
Sbjct: 127 LDMRMDQNKEVDATKLIQNSTVSELVKIMKNYGEIKDPYRVVVALKKAFEKKELNTLE-V 185

Query: 192 SSLIQKTV-----YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
             LI+K V     Y +K    HPA R FQALRI VNNE+E L + L      L  GG + 
Sbjct: 186 VELIKKHVNKAELYANK----HPARRYFQALRIAVNNELEVLEKLLSYLPSYLNKGGKIA 241

Query: 247 VVSFHSLEDRLVKKFF---ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
           +++FHSLE+++VKK F   AS S    ++ ++  +N     + +   K + PTQ ++  N
Sbjct: 242 IITFHSLEEKIVKKVFRHLASTS----SLNNLPINNELLKKYHNHFNKGLSPTQSELETN 297

Query: 304 RRSRSAKL 311
           RRSRSAKL
Sbjct: 298 RRSRSAKL 305


>gi|330836624|ref|YP_004411265.1| Ribosomal RNA small subunit methyltransferase H [Spirochaeta
           coccoides DSM 17374]
 gi|329748527|gb|AEC01883.1| Ribosomal RNA small subunit methyltransferase H [Spirochaeta
           coccoides DSM 17374]
          Length = 314

 Score =  155 bits (391), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 108/300 (36%), Positives = 159/300 (53%), Gaps = 9/300 (3%)

Query: 20  HVPVLLEKVI-ALLNP--APGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCG 74
           H PVL E+V+ AL+ P   P  +++D T G GG++    +   N  VI LDRD       
Sbjct: 6   HQPVLAEEVLDALVIPLDVPA-LMIDCTTGEGGHTGMMLERHPNLTVIGLDRDEAIQKKA 64

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +  +  Y  +F      F            D ++FDLG+S        RGFSFQK  PLD
Sbjct: 65  RTRLESYGGRFIPTLTWFDDFLTTYEGTAPDAILFDLGISMFHYVESGRGFSFQKPEPLD 124

Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MR+     IS +D+VN    + L  I+   GEE+ + +IA AI + R       +  L+ 
Sbjct: 125 MRLDAQDAISVADIVNTYEERRLADIIYAYGEERHSRKIAAAICRARAEERLTYSDRLAE 184

Query: 194 LIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           LI+  V  + +  RIHPAT++FQALRI VN+E++ +   + +A K ++ GG + V++FHS
Sbjct: 185 LIKSAVPPAYRFGRIHPATKTFQALRIEVNHELDRIKPAIEAALKIIRPGGRIAVITFHS 244

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR VK  F   +      R    ++  P  F  ITKK +VP++++   N  +RSAKLR
Sbjct: 245 LEDRKVKWIFKEAAWDTEETREKKTASTFPP-FAIITKKPIVPSEDECRRNPAARSAKLR 303


>gi|332663143|ref|YP_004445931.1| ribosomal RNA small subunit methyltransferase H [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332331957|gb|AEE49058.1| Ribosomal RNA small subunit methyltransferase H [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 298

 Score =  155 bits (391), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 103/302 (34%), Positives = 164/302 (54%), Gaps = 13/302 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H PVL  + I  LN   G   +DATFG GG++R   +     + +I  D+D       + 
Sbjct: 4   HNPVLASEAIEALNIQAGGTYVDATFGGGGHARLILQALDENARLIGFDQDE---DAQRN 60

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK-GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
            + D +  F      F +    + D   VDG++ DLGVSS Q++  +RGFSF+    LDM
Sbjct: 61  ALDDPRFTFVPHNFRFLRRFLRLHDAVEVDGILADLGVSSHQLNEAERGFSFRFDTQLDM 120

Query: 136 RMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM+  G  SA+DV+      +L  + G LGE + +  +A AIV+ RQ  P ++  DL ++
Sbjct: 121 RMNQQGERSAADVLATYTEAELQNMFGTLGEVRNSRTLAQAIVRERQVRPMRSISDLLAV 180

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           +   V   +N  +    + FQALR+ VN+E+  L   L  + + LK GG L+++++HS+E
Sbjct: 181 LDPLVRGQRNRYL---AQVFQALRMEVNDEVGALQDFLEQSLQVLKPGGRLVIIAYHSIE 237

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           DR+VK F   ++GKV               F+ IT+K ++P++ ++  N RSRSAK+R  
Sbjct: 238 DRMVKNFI--KTGKVDGEMEQDFYGNITRPFEVITRKAMLPSEIEIKANPRSRSAKMRVA 295

Query: 315 MR 316
           ++
Sbjct: 296 VK 297


>gi|209554330|ref|YP_002284822.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar
           10 str. ATCC 33699]
 gi|263504480|sp|B5ZBN2|RSMH_UREU1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|209541831|gb|ACI60060.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar
           10 str. ATCC 33699]
          Length = 308

 Score =  155 bits (391), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 108/309 (34%), Positives = 159/309 (51%), Gaps = 18/309 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI---ALDRDPFAVSCGQE 76
           H  VLL + I LL+  P  + +D TFG GG+S+   K  S       +D+D  A+     
Sbjct: 6   HTTVLLNETIELLHVKPDGIYVDCTFGRGGHSQLILKKLSKKGKLICIDQDQQAIDFANN 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             +D      + +  F  L+  + D     VDG VFDLG+SS Q+D  +RGFS+ K   L
Sbjct: 66  LFKD-NPNVIVIKTNFKNLKSVLYDHQIFHVDGFVFDLGLSSPQLDDPERGFSYHKDALL 124

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     ++A  +VN  +   L  I    GE K A  IA+ IVK R +    TT +L 
Sbjct: 125 DMRMDQEQKLNAHYIVNHYSFAKLVNIFTKYGEIKYAKTIANGIVKERSTKAINTTLELV 184

Query: 193 SLIQ----KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +I+    K + F K    HPA   FQA+RI VN+E+  L +    A   L   G++ ++
Sbjct: 185 EIIKNYSPKKILFEKK---HPARLFFQAIRIEVNDELNILKKAFNDAISMLNPLGVVAII 241

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLED++VKK F + +   +     IP N +   +  + +K++  TQE +  N RSRS
Sbjct: 242 SFHSLEDKIVKKVFNNYAKNKLPKE--IPLNNYVNQYSLLNQKIMPSTQE-LNDNNRSRS 298

Query: 309 AKLRAGMRT 317
           + LR  ++ 
Sbjct: 299 SILRGLVKN 307


>gi|157414980|ref|YP_001482236.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|263445755|sp|A8FLC2|RSMH_CAMJ8 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|157385944|gb|ABV52259.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|307747617|gb|ADN90887.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Campylobacter jejuni subsp. jejuni M1]
 gi|315931891|gb|EFV10846.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 310

 Score =  155 bits (391), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 106/302 (35%), Positives = 164/302 (54%), Gaps = 13/302 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           H+PVLL +V  +         LD T G GG+S +  K   ++  IA D+D  A+   ++ 
Sbjct: 5   HIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKNHPDLKFIACDQDQQALEFSKKR 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
           ++D+  + +  Q+ FS++ + +  K  + G++ D+GVSS Q+D  +RGFS   S  LDMR
Sbjct: 65  LKDFHNRITFIQSNFSEVLEKISYKEELRGILADIGVSSFQLDNNERGFSVN-SDFLDMR 123

Query: 137 MS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M+  S ISA +++N    + LT I    GE   A  IA  I   R   P ++ ++L  +I
Sbjct: 124 MNQNSKISAYEIINTYTKEQLTSIFKDYGELHDAHFIAEKICLERSKNPIKSAKELYQII 183

Query: 196 QKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
            K     +N+R I  AT +FQA+RI VN E++ L   L   E       +L ++SFHSLE
Sbjct: 184 GKG---KQNHRKISKATLAFQAIRIEVNQELKVLKDFLGHLENLKPKNCILAIISFHSLE 240

Query: 255 DRLVKKFFASRSGKVMAVRHMIPS---NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           DR+VK FF   S   +    ++     N H ++ Q ITKK +  ++E++  N RS  AK+
Sbjct: 241 DRIVKNFFKKWSKNCICDEKIMRCECGNNH-SLGQIITKKAISASKEELLKNSRSSCAKM 299

Query: 312 RA 313
           RA
Sbjct: 300 RA 301


>gi|167972765|ref|ZP_02555042.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 5
           str. ATCC 27817]
 gi|167973620|ref|ZP_02555897.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar
           11 str. ATCC 33695]
 gi|167975916|ref|ZP_02558193.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar
           12 str. ATCC 33696]
 gi|167987809|ref|ZP_02569480.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|168363028|ref|ZP_02696202.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar
           13 str. ATCC 33698]
 gi|195867888|ref|ZP_03079887.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 9
           str. ATCC 33175]
 gi|198273780|ref|ZP_03206314.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 4
           str. ATCC 27816]
 gi|225550865|ref|ZP_03771814.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
 gi|225551533|ref|ZP_03772479.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 8
           str. ATCC 27618]
 gi|171903084|gb|EDT49373.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar
           13 str. ATCC 33698]
 gi|184209218|gb|EDU06261.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 5
           str. ATCC 27817]
 gi|188019063|gb|EDU57103.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|188998230|gb|EDU67327.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar
           11 str. ATCC 33695]
 gi|195659727|gb|EDX53107.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar
           12 str. ATCC 33696]
 gi|195660465|gb|EDX53723.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 9
           str. ATCC 33175]
 gi|198249535|gb|EDY74317.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 4
           str. ATCC 27816]
 gi|225379348|gb|EEH01713.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 8
           str. ATCC 27618]
 gi|225380019|gb|EEH02381.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
          Length = 308

 Score =  155 bits (391), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 108/309 (34%), Positives = 159/309 (51%), Gaps = 18/309 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI---ALDRDPFAVSCGQE 76
           H  VLL + I LL+  P  + +D TFG GG+S+   K  S       +D+D  A+     
Sbjct: 6   HTTVLLNETIELLHVKPDGIYVDCTFGRGGHSQLILKKLSKKGKLICIDQDQQAIDFANN 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             +D      + +  F  L+  + D     VDG VFDLG+SS Q+D  +RGFS+ K   L
Sbjct: 66  LFKD-NPNVIVIKTNFKNLKSVLYDHQIFHVDGFVFDLGLSSPQLDDPERGFSYHKDALL 124

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     ++A  +VN  +   L  I    GE K A  IA+ IVK R +    TT +L 
Sbjct: 125 DMRMDQEQKLNAHYIVNHYSFAKLVNIFTKYGEIKYAKTIANGIVKERSTKAINTTLELV 184

Query: 193 SLIQ----KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +I+    K + F K    HPA   FQA+RI VN+E+  L +    A   L   G++ ++
Sbjct: 185 EIIKNYSPKKILFEKK---HPARLFFQAIRIEVNDELNILEKAFNDAISMLNPLGVVAII 241

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLED++VKK F + +   +     IP N +   +  + +K++  TQE +  N RSRS
Sbjct: 242 SFHSLEDKIVKKVFNNYAKNKLPKE--IPLNNYVNQYSLLNQKIMPSTQE-LNDNNRSRS 298

Query: 309 AKLRAGMRT 317
           + LR  ++ 
Sbjct: 299 SILRGLVKN 307


>gi|305433210|ref|ZP_07402366.1| S-adenosyl-methyltransferase MraW [Campylobacter coli JV20]
 gi|304443911|gb|EFM36568.1| S-adenosyl-methyltransferase MraW [Campylobacter coli JV20]
          Length = 311

 Score =  155 bits (391), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 106/304 (34%), Positives = 161/304 (52%), Gaps = 17/304 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           H+PVLL +V            LD T G GG+S S  K   N+  IA D+D  A+   ++ 
Sbjct: 5   HIPVLLNEVNQAFEKLNSGYFLDCTLGFGGHSESLLKDHPNLKLIACDQDKEALEFSKKR 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVP-DKGVD--GVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           + D+K++     + FSQ+ D +  DK  D  G++ D+GVSS Q+D   RGF+   S  LD
Sbjct: 65  LHDFKDRTEFVLSNFSQILDQISHDKLNDLKGILADIGVSSYQLDNNKRGFNLH-SDFLD 123

Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM+    ISA +++N    + L+ I    GE      IA  I + RQ    ++ ++L  
Sbjct: 124 MRMNQDAKISAFEIINNYTQEQLSDIFKKYGELNDGYFIAQKICQERQKNKIKSAKELYE 183

Query: 194 LIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +I KT    +N+R +  AT  FQA+RI VN E+E L   L   EK      +L ++ FHS
Sbjct: 184 IIGKT---KQNHRSVSKATLVFQAIRIEVNQELEVLKNFLEKLEKIKLKNCILAIICFHS 240

Query: 253 LEDRLVKKFFASRSGKVM----AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           LEDR+VK +F   +   +    A R    +N   ++ + I+KK + P++E++  N RS  
Sbjct: 241 LEDRIVKNYFKKWAKNCICDERAFRCECGNN--HSLGEIISKKAITPSKEEIMINSRSSC 298

Query: 309 AKLR 312
           AK+R
Sbjct: 299 AKMR 302


>gi|225375865|ref|ZP_03753086.1| hypothetical protein ROSEINA2194_01497 [Roseburia inulinivorans DSM
           16841]
 gi|225212300|gb|EEG94654.1| hypothetical protein ROSEINA2194_01497 [Roseburia inulinivorans DSM
           16841]
          Length = 355

 Score =  154 bits (390), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 106/313 (33%), Positives = 164/313 (52%), Gaps = 28/313 (8%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF--CKMG-SNVIALDRDPFAVSCG 74
           G H+ +++ ++I  L   PG+   DAT G  G++++   C  G  ++ A D DP   +  
Sbjct: 55  GMHISIMVREIIDFLQIKPGQTGFDATLGYSGHTKAMLECLKGQGHMYATDVDPIESAKT 114

Query: 75  QETMRDY---KEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           ++ + D    ++  ++    F  + +   + G  D V+ DLGVSSMQID  DRGFSF+  
Sbjct: 115 KKRLADAGFGEDILTIRLQNFCTIDEIAKEAGGFDFVLADLGVSSMQIDNPDRGFSFKVD 174

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV-KRRQSAPFQTT 188
           GPLD+R++   GISA++ + Q +  +L  +L    +E  A  +A AIV +R+   P  TT
Sbjct: 175 GPLDLRLNPEKGISAAERLAQIDEDELAGMLWENSDEPYAEELARAIVTERKHGKPIDTT 234

Query: 189 QDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
             L  +I++T+ F      K+       R+FQALRI VNNE E L + +     ALK GG
Sbjct: 235 TRLREVIEETLSFLPEKEKKDTVKKTCQRTFQALRIDVNNEFEVLYEFMEKLPGALKPGG 294

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
              +++FHS ED+LVKK               +       V+  I   VV P+ E+ A N
Sbjct: 295 RAAILTFHSGEDKLVKK--------------ALKQGYKEGVYSEIANDVVRPSAEECAQN 340

Query: 304 RRSRSAKLRAGMR 316
            R+RS K+R  +R
Sbjct: 341 GRARSTKMRWAVR 353


>gi|294155677|ref|YP_003560061.1| S-adenosyl-methyltransferase [Mycoplasma crocodyli MP145]
 gi|291600063|gb|ADE19559.1| S-adenosyl-methyltransferase [Mycoplasma crocodyli MP145]
          Length = 300

 Score =  154 bits (390), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 107/300 (35%), Positives = 160/300 (53%), Gaps = 17/300 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSNV-IALDRDPFAVSCGQET 77
           H  VLL + I  LN  P  + +D T G GG+S     K+ S + IA D+D +A+   Q+ 
Sbjct: 5   HYSVLLNETIDSLNIKPDGIYIDLTLGMGGHSTKILEKLKSGLLIAFDKDKYALEISQKR 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +    ++F L  + +S+L+  +       VDG++ DLG+SS Q+D  +RGFS+ K   LD
Sbjct: 65  LSQISDKFILVNSDYSKLKSELFKLNINKVDGIIADLGISSPQVDDANRGFSYNKDARLD 124

Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM  +  I A  +VN  + + L  I     + K A ++A  I K R   P   T +L  
Sbjct: 125 MRMDTNQEIDAHYIVNNYSCEQLVDIFLKYADVKLAKQVAKVIEKNR---PINNTLELVE 181

Query: 194 LIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +I K+ Y +   R  +PA   FQALRI VNNE++ L   L  A + LK    L +++FHS
Sbjct: 182 II-KSAYPAAILRAKNPAKAVFQALRIEVNNELDSLKTMLDDAIELLKENSSLSIITFHS 240

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           +EDRLVK  F       M  +  +P N      +  + K + P+ +++  N+RSRSAKLR
Sbjct: 241 IEDRLVKHKFTELCSSKMPAK--MPINE----IKYFSTKQIKPSAKELLENKRSRSAKLR 294


>gi|218562332|ref|YP_002344111.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|20139252|sp|Q9PPL4|RSMH_CAMJE RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|112360038|emb|CAL34830.1| S-adenosyl-methyltransferase [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
          Length = 312

 Score =  154 bits (390), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 105/302 (34%), Positives = 165/302 (54%), Gaps = 13/302 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           H+PVLL +V  +         LD T G GG+S +  K   ++  IA D+D  A+   ++ 
Sbjct: 7   HIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKNHPDLKFIACDQDQQALKFSKKR 66

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
           ++D++ + +  Q+ FS++ + +  K  + G++ D+GVSS Q+D  +RGFS   S  LDMR
Sbjct: 67  LKDFRNRITFMQSNFSEVLEKISHKEELRGILADIGVSSFQLDNNERGFSVN-SDFLDMR 125

Query: 137 MS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M+  S ISA +++N    + LT I    GE   A  IA  I   R     ++ ++L  +I
Sbjct: 126 MNQNSKISAYEIINTYTKEQLTSIFKDYGELHDAHFIAEKICLERSKNLIKSAKELYQII 185

Query: 196 QKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
            K     +N+R I  AT +FQA+RI VN E++ L   L   E       +L ++SFHSLE
Sbjct: 186 GKG---KQNHRKISKATLAFQAIRIEVNQELKVLKDFLEHLENLKPKNCILAIISFHSLE 242

Query: 255 DRLVKKFFASRSGKVMAVRHMIPS---NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           DR+VK+FF   S   +    ++     N H ++ Q ITKK +  ++E++  N RS  AK+
Sbjct: 243 DRIVKQFFKKWSKNCICNEKIMRCECGNNH-SLGQIITKKAISASKEELLKNSRSSCAKM 301

Query: 312 RA 313
           RA
Sbjct: 302 RA 303


>gi|315637346|ref|ZP_07892564.1| S-adenosyl-methyltransferase MraW [Arcobacter butzleri JV22]
 gi|315478389|gb|EFU69104.1| S-adenosyl-methyltransferase MraW [Arcobacter butzleri JV22]
          Length = 300

 Score =  154 bits (390), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 100/300 (33%), Positives = 164/300 (54%), Gaps = 14/300 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           H+PVL  +V+          I+D T G  G+S        N+  I  D+D  A++  ++ 
Sbjct: 5   HIPVLYNEVLETFKDTNEGYIIDCTTGFAGHSSGLLNQNQNIKLICNDQDDEALAFSKKR 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
           +  ++ +    +  F  + +   D  + GV+ D+GVSS+Q+D  +RGF F+ S  LDMRM
Sbjct: 65  VEKFENRVIFNKGNFEHVIETFKDYEIRGVLADIGVSSLQLDKLERGFGFE-SLTLDMRM 123

Query: 138 SCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
           + +  + A+ VVN  +  +L RI    GE ++  ++A  IV  R   PF ++++L+  + 
Sbjct: 124 NQNQSLDAATVVNTYSQTELERIFKDYGEVREYKKVASLIVNNR---PFNSSKELADFLS 180

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
           K +      ++HPAT  FQA+RI VN+E+  L +   S EKA     ++ ++SFHSLEDR
Sbjct: 181 KKM---SKGKLHPATLPFQAIRIEVNDELGVLERLFDSLEKAKLKDCIVAIISFHSLEDR 237

Query: 257 LVKKFFASRSGKVMAVRHMI---PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           +VK +F   S   +   ++      N H A+ + ITKK ++PT  ++  N RSRS+KLR 
Sbjct: 238 IVKNYFKKWSKSCICPDNVFRCECGNNH-ALGKIITKKPIIPTALEIKQNPRSRSSKLRV 296


>gi|313681992|ref|YP_004059730.1| s-adenosyl-methyltransferase mraw [Sulfuricurvum kujiense DSM
           16994]
 gi|313154852|gb|ADR33530.1| S-adenosyl-methyltransferase MraW [Sulfuricurvum kujiense DSM
           16994]
          Length = 307

 Score =  154 bits (390), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 106/306 (34%), Positives = 174/306 (56%), Gaps = 24/306 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQET 77
           H+PVL  +VI   +P    +++D T G GG+S    +     ++I +D+DP A++   + 
Sbjct: 6   HIPVLYREVIEAFSPCKEGIVIDCTMGYGGHSSLLLENNPALSLIGIDQDPTAIAFSSKR 65

Query: 78  MRDYKEQFSLFQATFSQL-QDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +  +  +  + +  FS++ +D + +KG  + G++ D+GVSS+Q+D  +RGFS++ S  LD
Sbjct: 66  LEPFGNRVEIRRGRFSEVARDAIEEKGEKICGILADIGVSSLQLDQRERGFSYE-SDTLD 124

Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM+    +SA +VVN  +   L  IL   GE   A ++A  IV+RR   PF + ++LS+
Sbjct: 125 MRMNPDAPLSAGEVVNDYSQGALETILREYGEVTNARKVAETIVQRR---PFSSAKELSN 181

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
            I       K  +IHP+T   QA+RI VN+E+ EL + L + E +      + +++FHSL
Sbjct: 182 AIFH--LMPKGKKIHPSTLVMQAIRIEVNDELGELTRLLDAIEASKLKHLRVAIITFHSL 239

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNA-------HPAVFQSITKKVVVPTQEDVAFNRRS 306
           EDR+VK  F ++ GK      + P +A         A+ + ITKK +    +++  N RS
Sbjct: 240 EDRIVKNRF-TKWGK----NCICPDDAMRCTCGNKNAIGKIITKKPLSAQDDELRANSRS 294

Query: 307 RSAKLR 312
           RSAKLR
Sbjct: 295 RSAKLR 300


>gi|33860731|ref|NP_892292.1| hypothetical protein PMM0171 [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|42559450|sp|Q7V3B1|RSMH_PROMP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|33633673|emb|CAE18630.1| conserved hypothetical protein [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 300

 Score =  154 bits (390), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 106/277 (38%), Positives = 154/277 (55%), Gaps = 25/277 (9%)

Query: 41  LDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDY 98
           +DAT G GG+S    K   +  +I LD DPFA       + ++K +  +  + F+   ++
Sbjct: 39  IDATLGGGGHSYQLLKKYPDLKIIGLDHDPFARQSAFIKLEEFKSRIEICPSNFA---NF 95

Query: 99  VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLT 157
            P + V  V+ DLGV+S QID   RGFSFQK GPLDMRM+    ++A D++   N KDL 
Sbjct: 96  EPKEKVSFVIADLGVNSNQIDNPQRGFSFQKDGPLDMRMNPLLEMNAEDLIETLNEKDLA 155

Query: 158 RILGILGEEKQASRIAHAIVKRRQS-APFQTTQDLSSLIQKTVYFSKNNR-IHPATRSFQ 215
            ++   G+E+ + +I+  I K  Q    +  T+DL+  I       +  R IHPATR+FQ
Sbjct: 156 DLIFKFGDERLSRKISRRIKKDLQEKGKYSGTKDLAYSIAGCFPPKQRYRKIHPATRTFQ 215

Query: 216 ALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM 275
           ALRI VN EIE L + L  A   L  GG++ ++SFHS+EDRLVK  F             
Sbjct: 216 ALRIAVNKEIEALERFLELAPNWLLPGGIISIISFHSIEDRLVKNSFKGDER-------- 267

Query: 276 IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
                     +++TKK + P ++++  N+RSRSAKLR
Sbjct: 268 ---------LKNLTKKPITPNEKEIENNKRSRSAKLR 295


>gi|110004576|emb|CAK98913.1| probable s-adenosyl-methyltransferase mraw protein [Spiroplasma
           citri]
          Length = 313

 Score =  154 bits (389), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 109/304 (35%), Positives = 164/304 (53%), Gaps = 12/304 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H  VLL++ IA LN     + +D T G  G+S    K   N  +   ++D  A+   ++ 
Sbjct: 5   HQTVLLQEAIAGLNILNNGIYVDCTLGRAGHSLEILKHLPNGKLYCFEQDEAAIIASKQI 64

Query: 78  MRDYK-EQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           +++ K   + + +  F  L   +     K V+G+++DLGVSS Q+D  +RGFS++    L
Sbjct: 65  LQESKYHNYEIIKNNFVNLAAELQVRQVKAVNGILYDLGVSSPQLDDDNRGFSYRYDSLL 124

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+    ++A  +VN  + + L ++    GEE  A  IA  IV  R +    TT  L 
Sbjct: 125 DMRMNQKQELTAKIIVNTYSQEALAKLFQDYGEEPFAKVIAKNIVIARNTQEIVTTFHLV 184

Query: 193 SLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
            +I+K++     K  + HPA R FQALRI VN E+  L + L  A   L   G L+V+SF
Sbjct: 185 EIIKKSLPQKILKKAK-HPAKRVFQALRIEVNQELFVLQESLLQATTLLAVHGRLVVISF 243

Query: 251 HSLEDRLVKKFFASRSGK-VMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+VKK+F S +      +   +P  +H  + +Q I KK +VP+  + A N RS S
Sbjct: 244 HSLEDRIVKKYFQSLTKDPNYEINQQLPVISHFESNYQIIIKKAIVPSGTEQARNHRSTS 303

Query: 309 AKLR 312
           AKLR
Sbjct: 304 AKLR 307


>gi|13357947|ref|NP_078221.1| hypothetical protein UU386 [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|170762354|ref|YP_001752469.1| S-adenosyl-methyltransferase MraW [Ureaplasma parvum serovar 3 str.
           ATCC 27815]
 gi|20139253|sp|Q9PQA4|RSMH_UREPA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263504475|sp|B1AJ25|RSMH_UREP2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|11278383|pir||D82897 conserved hypothetical UU386 [imported] - Ureaplasma urealyticum
 gi|6899371|gb|AAF30796.1|AE002136_3 conserved hypothetical [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|168827931|gb|ACA33193.1| S-adenosyl-methyltransferase MraW [Ureaplasma parvum serovar 3 str.
           ATCC 27815]
          Length = 308

 Score =  154 bits (389), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 109/308 (35%), Positives = 161/308 (52%), Gaps = 16/308 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI---ALDRDPFAVSCGQE 76
           H+ VLL + I LLN  P  + +D TFG GG+S+   K  S       LD+D  A++    
Sbjct: 6   HITVLLNETIELLNIKPDGIYVDCTFGRGGHSQLILKKLSKKGKLICLDQDQEAINFANN 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             ++      + +  F  L+  +       VDG +FDLG+SS Q+D   RGFS+ K+  L
Sbjct: 66  LFKN-NTNVIVIKTNFKNLKSALSAHKIFYVDGFIFDLGLSSPQLDDPKRGFSYHKNAWL 124

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  S  ++A  +VN  +   L  I    GE K    IA AIVK R      TT +L 
Sbjct: 125 DMRMDQSQNLNAHYIVNNYSFAKLVSIFKRYGEIKYPKIIADAIVKERSIKEINTTLELV 184

Query: 193 SLIQKTVYFSKNN---RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            +I+K  Y  K N   + HPA   FQA+RI VN+E+  L +    A   L   G++ ++S
Sbjct: 185 EIIKK--YSPKKNLFEKKHPARLFFQAIRIEVNDELNILEKAFNDAISMLNPLGVVAIIS 242

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLED++VKK F + +   + +   +P N +   +  + +K++  TQE +  N RSRS+
Sbjct: 243 FHSLEDKIVKKVFNNYAK--IKLPKEVPINNYVNKYSLLNQKIMPSTQE-LNDNNRSRSS 299

Query: 310 KLRAGMRT 317
            LR  +R 
Sbjct: 300 ILRGLIRN 307


>gi|258614830|ref|ZP_05712600.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium DO]
          Length = 234

 Score =  154 bits (389), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 88/213 (41%), Positives = 131/213 (61%), Gaps = 5/213 (2%)

Query: 104 VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGI 162
           VDG+++DLGVSS Q+D  +RGFS+ +  PLDMRM  S  +SA  V+N+ +  +L +I   
Sbjct: 13  VDGILYDLGVSSPQLDEAERGFSYHQDAPLDMRMDQSAPLSAYHVINEYSYHELVKIFFR 72

Query: 163 LGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRI-HPATRSFQALRIFV 221
            GEEK + +IA  I + R++ P QTT +L  +I++ +      +  HPA R FQA+RI V
Sbjct: 73  YGEEKFSKQIAREIERVRKTKPIQTTGELVEIIKQVIPAPARRKGGHPAKRIFQAVRIAV 132

Query: 222 NNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSG--KVMAVRHMIPSN 279
           N+E+      L  A + LK  G + V++FHSLEDR+VK  F   S    +     +IP  
Sbjct: 133 NDELGAEEASLEQAIRLLKVNGRISVITFHSLEDRIVKSMFKEYSTVQDLPPGLPVIPDE 192

Query: 280 AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
             P + + IT+K ++P++E++  N RSRSAKLR
Sbjct: 193 FQPEL-KVITRKPILPSEEELTENNRSRSAKLR 224


>gi|86153556|ref|ZP_01071760.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|85843282|gb|EAQ60493.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp.
           jejuni HB93-13]
          Length = 310

 Score =  154 bits (388), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 106/302 (35%), Positives = 164/302 (54%), Gaps = 13/302 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           H+PVLL +V  +         LD T G GG+S +  K   ++  IA D+D  A+   ++ 
Sbjct: 5   HIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKNHPDLKFIACDQDQQALEFSKKR 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
           ++D+  + +  Q+ FS++ + +  K  + G++ D+GVSS Q+D  +RGFS   S  LDMR
Sbjct: 65  LKDFHNRITFVQSNFSEVLEKISHKEELRGILADIGVSSFQLDNNERGFSVN-SDFLDMR 123

Query: 137 MS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M+  S ISA +++N    + LT I    GE   A  IA  I   R   P ++ ++L  +I
Sbjct: 124 MNQNSKISAYEIINTYTKEQLTSIFKDYGELHDAHFIAEKICLERSKNPIKSAKELYQII 183

Query: 196 QKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
            K     +N+R I  AT +FQA+RI VN E++ L   L   E       +L ++SFHSLE
Sbjct: 184 GKG---KQNHRKISKATLAFQAIRIEVNQELKVLKDFLGHLENLKPKNCILAIISFHSLE 240

Query: 255 DRLVKKFFASRSGKVMAVRHMIPS---NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           DR+VK FF   S   +    ++     N H ++ Q ITKK +  ++E++  N RS  AK+
Sbjct: 241 DRIVKIFFKKWSKNCICDEKIMRCECGNNH-SLGQIITKKAISASKEELLKNSRSSCAKM 299

Query: 312 RA 313
           RA
Sbjct: 300 RA 301


>gi|183508652|ref|ZP_02958151.1| S-adenosyl-methyltransferase MraW [Ureaplasma parvum serovar 14
           str. ATCC 33697]
 gi|182676119|gb|EDT88024.1| S-adenosyl-methyltransferase MraW [Ureaplasma parvum serovar 14
           str. ATCC 33697]
          Length = 308

 Score =  153 bits (387), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 109/308 (35%), Positives = 161/308 (52%), Gaps = 16/308 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI---ALDRDPFAVSCGQE 76
           H+ VLL + I LLN  P  + +D TFG GG+S+   K  S       LD+D  A++    
Sbjct: 6   HITVLLNETIELLNIKPDGIYVDCTFGRGGHSQLILKKLSKKGKLICLDQDQEAINFANN 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             ++      + +  F  L+  +       VDG +FDLG+SS Q+D   RGFS+ K+  L
Sbjct: 66  LFKN-NTNVIVIKTNFKNLKSALSAHKIFYVDGFIFDLGLSSPQLDDPKRGFSYHKNAWL 124

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  S  ++A  +VN  +   L  I    GE K    IA AIVK R      TT +L 
Sbjct: 125 DMRMDQSQNLNAHYIVNNYSFVKLVSIFKRYGEIKYPKIIADAIVKERSIKEINTTLELV 184

Query: 193 SLIQKTVYFSKNN---RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            +I+K  Y  K N   + HPA   FQA+RI VN+E+  L +    A   L   G++ ++S
Sbjct: 185 EIIKK--YSPKKNLFEKKHPARLFFQAIRIEVNDELNILEKAFNDAISMLNPLGVVAIIS 242

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLED++VKK F + +   + +   +P N +   +  + +K++  TQE +  N RSRS+
Sbjct: 243 FHSLEDKIVKKVFNNYAK--IKLPKEVPINNYVNKYSLLNQKIMPSTQE-LNDNNRSRSS 299

Query: 310 KLRAGMRT 317
            LR  +R 
Sbjct: 300 ILRGLIRN 307


>gi|186701697|ref|ZP_02971391.1| S-adenosyl-methyltransferase MraW [Ureaplasma parvum serovar 6 str.
           ATCC 27818]
 gi|186700956|gb|EDU19238.1| S-adenosyl-methyltransferase MraW [Ureaplasma parvum serovar 6 str.
           ATCC 27818]
          Length = 308

 Score =  153 bits (387), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 109/308 (35%), Positives = 161/308 (52%), Gaps = 16/308 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI---ALDRDPFAVSCGQE 76
           H+ VLL + I LLN  P  + +D TFG GG+S+   K  S       LD+D  A++    
Sbjct: 6   HITVLLNETIELLNIKPDGIYVDCTFGRGGHSQLILKKLSKKGKLICLDQDQEAINFANN 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             ++      + +  F  L+  +       VDG +FDLG+SS Q+D   RGFS+ K+  L
Sbjct: 66  LFKN-NTNVIVIKTNFKNLKSALGAHKIFYVDGFIFDLGLSSPQLDDPKRGFSYHKNAWL 124

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  S  ++A  +VN  +   L  I    GE K    IA AIVK R      TT +L 
Sbjct: 125 DMRMDQSQNLNAHYIVNNYSFAKLVSIFKRYGEIKYPKIIADAIVKERSIKEINTTLELV 184

Query: 193 SLIQKTVYFSKNN---RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            +I+K  Y  K N   + HPA   FQA+RI VN+E+  L +    A   L   G++ ++S
Sbjct: 185 EIIKK--YSPKKNLFEKKHPARLFFQAIRIEVNDELNILEKAFNDAISMLNPLGVVAIIS 242

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLED++VKK F + +   + +   +P N +   +  + +K++  TQE +  N RSRS+
Sbjct: 243 FHSLEDKIVKKVFNNYAK--IKLPKEVPINNYVNKYSLLNQKIMPSTQE-LNDNNRSRSS 299

Query: 310 KLRAGMRT 317
            LR  +R 
Sbjct: 300 ILRGLIRN 307


>gi|157737563|ref|YP_001490246.1| S-adenosyl-methyltransferase MraW [Arcobacter butzleri RM4018]
 gi|172045652|sp|A8EUF3|RSMH_ARCB4 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|157699417|gb|ABV67577.1| S-adenosyl-methyltransferase [Arcobacter butzleri RM4018]
          Length = 300

 Score =  153 bits (387), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 100/300 (33%), Positives = 163/300 (54%), Gaps = 14/300 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           H+PVL  +V+          I+D T G  G+S        N+  I  D+D  A++  ++ 
Sbjct: 5   HIPVLYNEVLETFKDINEGYIIDCTTGFAGHSSGLLNQNQNIKLICNDQDDEALAFSKKR 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
           +  ++      +  F  + +   D  + GV+ D+GVSS+Q+D  +RGF F+ S  LDMRM
Sbjct: 65  LEKFENGVIFNKGNFEHVIETFKDYEIRGVLADIGVSSLQLDKLERGFGFE-SLTLDMRM 123

Query: 138 SCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
           + +  + A+ VVN  +  +L RI    GE ++  ++A  IV  R   PF ++++L+  + 
Sbjct: 124 NQNQSLDAATVVNTYSQTELERIFKDYGEVREYKKVASLIVNNR---PFNSSKELADFLS 180

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
           K +      ++HPAT  FQA+RI VN+E+  L +   S EKA     ++ ++SFHSLEDR
Sbjct: 181 KKM---SKGKLHPATLPFQAIRIEVNDELGVLERLFDSLEKAKLKDCIVAIISFHSLEDR 237

Query: 257 LVKKFFASRSGKVMAVRHMI---PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           +VK +F   S   +   ++      N H A+ + ITKK ++PT  ++  N RSRS+KLR 
Sbjct: 238 IVKNYFKKWSKSCICPDNVFRCECGNNH-ALGKIITKKPIIPTALEIKQNPRSRSSKLRV 296


>gi|313677372|ref|YP_004055368.1| s-adenosyl-methyltransferase mraw [Marivirga tractuosa DSM 4126]
 gi|312944070|gb|ADR23260.1| S-adenosyl-methyltransferase MraW [Marivirga tractuosa DSM 4126]
          Length = 301

 Score =  153 bits (387), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 103/299 (34%), Positives = 164/299 (54%), Gaps = 13/299 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H PV+L++ +  L   P  + +D TFG GG+S++  +  ++  ++  D+D  A     E 
Sbjct: 5   HEPVMLQQCLDGLAIKPNGIYVDLTFGGGGHSKAILEKLTDGKLLGFDQDQDA-EVNAEA 63

Query: 78  MRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +      F   QA F  ++ Y+     K VDGV+ DLGVSS Q +  +RGFS +    LD
Sbjct: 64  IN--HPGFEFVQANFRFVKKYLKLYRIKQVDGVLADLGVSSHQFNKAERGFSTRFDAELD 121

Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM     ++A +V+N+ +  DL +I G+ GE + A  +A AIV  R ++P  T  +L  
Sbjct: 122 MRMDQHAPVTAKEVINEYSESDLHKIFGLYGEVRNAKTLASAIVSARAASPINTIGELKE 181

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           ++ +     + N+ +   + FQALRI VN E++ L + L   E+ +K GG L+V+S+HSL
Sbjct: 182 ILARFAKRGRENKYY--AQVFQALRIEVNEELKALEEALLQMEEVIKPGGRLVVMSYHSL 239

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           EDRLVK +     GK+               F+S+ +K +   +E++  N R+RSAKLR
Sbjct: 240 EDRLVKNYI--NKGKLDGEEEKDFYGNVLKPFKSVNRKPITAEEEELENNNRARSAKLR 296


>gi|258649007|ref|ZP_05736476.1| S-adenosyl-methyltransferase MraW [Prevotella tannerae ATCC 51259]
 gi|260850623|gb|EEX70492.1| S-adenosyl-methyltransferase MraW [Prevotella tannerae ATCC 51259]
          Length = 312

 Score =  153 bits (387), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 111/308 (36%), Positives = 165/308 (53%), Gaps = 15/308 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76
           H+PVLL+  +  LN  P    +D TFG GG+SR   + +G N  ++A D+D  A    Q 
Sbjct: 9   HIPVLLQTTVDGLNVRPDGCYVDCTFGGGGHSREILRRLGPNGRLLAFDQDADA----QR 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +   +++ +  Q+ F  L +++   G   VDG++ DLGVSS   D  DRGFSF+  G L
Sbjct: 65  NIPAGEDRLTFVQSNFRYLPNWLHYYGYAQVDGILADLGVSSHHFDAADRGFSFRFEGAL 124

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+     SA+ VVN  + + L  +  + GE     R+A AI+K R +AP +  + L 
Sbjct: 125 DMRMNKRAHTSAAGVVNTYSEEQLANLFYLYGELNNGRRLAAAIIKARAAAPIERVEQLV 184

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            ++  T Y           + FQALRI VN+E+E L   L +A   LK GG L ++++HS
Sbjct: 185 DVV--TPYLGAARAKKDMAKVFQALRIEVNHEMEALEAMLTAALTLLKPGGRLAILTYHS 242

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDRLVK F  + +      +    +   P   + +  +V+ P + ++  N RSRSAKLR
Sbjct: 243 LEDRLVKNFIKAGNATGKVEQDFYGNRLAP--MKPVNGRVIRPDEAEMNANPRSRSAKLR 300

Query: 313 AGMRTVER 320
            G    ER
Sbjct: 301 IGECIAER 308


>gi|269115003|ref|YP_003302766.1| S-adenosyl-methyltransferase mraW [Mycoplasma hominis]
 gi|268322628|emb|CAX37363.1| S-adenosyl-methyltransferase mraW [Mycoplasma hominis ATCC 23114]
          Length = 300

 Score =  153 bits (387), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 100/302 (33%), Positives = 166/302 (54%), Gaps = 16/302 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQE 76
           +H+PVLL +VI  L+  P  + +D T G GG+S+   K      +I  D+D  A++  +E
Sbjct: 2   EHIPVLLNEVIEQLSIKPDGIYVDLTLGRGGHSQEILKRLTTGKLICFDKDIQAINESRE 61

Query: 77  TMRDYKEQFSLFQATF----SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            +    + F L ++ F     +L+    DK VDG++ DLGVSS Q+D  +RGFS+  +  
Sbjct: 62  KLIKISQNFILIKSDFRNITCELKKLNIDK-VDGILADLGVSSPQLDDPNRGFSYSINSD 120

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM     ++A +++N A  K++  IL    + K ++ IA AIVK R   P   +  L
Sbjct: 121 LDMRMDLDNTLTAKEIINNATEKEIIDILQSNADVKLSNLIAKAIVKNR---PISDSFTL 177

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + +I+ ++      + +P+   FQA RI VN+E+  L++ L      LK  G + +++FH
Sbjct: 178 NQIIKDSLPAKIVRQKNPSKAVFQAFRIAVNDELNALSEMLSQLPNLLKKDGKIAIITFH 237

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           S ED +VKKF+ + +     ++ ++    H        +KV+ P+ ++   N+RSRSAKL
Sbjct: 238 SKEDVIVKKFYQNLNYFDPKLKKILIVETHKW-----HQKVIFPSSKEEEINKRSRSAKL 292

Query: 312 RA 313
           R 
Sbjct: 293 RV 294


>gi|154482529|ref|ZP_02024977.1| hypothetical protein EUBVEN_00196 [Eubacterium ventriosum ATCC
           27560]
 gi|149736554|gb|EDM52440.1| hypothetical protein EUBVEN_00196 [Eubacterium ventriosum ATCC
           27560]
          Length = 365

 Score =  153 bits (387), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 103/313 (32%), Positives = 162/313 (51%), Gaps = 28/313 (8%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCG 74
           G H+ + +++++  L+  PG++ LDAT G GG++    K      ++  LD DP  +   
Sbjct: 66  GMHISICVKEILEFLDIKPGQIGLDATLGYGGHTLQMLKKLDRKGHIYGLDIDPIEIKKT 125

Query: 75  QETMRDY---KEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            + + D    K+  +     F  +     + G  D ++ DLGVSSMQID  +RGF+++  
Sbjct: 126 TKRLADKGFGKDVLTTINTNFRNIDQVAKEHGPFDFILADLGVSSMQIDNPERGFTYKYE 185

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTT 188
           GPLD+R++   GISA++ +   +V +L  +     +E  A  IA AIV R R +   +TT
Sbjct: 186 GPLDLRLNPEKGISAAERLRDISVDELEGMFIENSDEPYAYEIAKAIVARNRTNNKIETT 245

Query: 189 QDLSSLIQKTVYFSKNNRIHPAT-----RSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
            DL ++I+K++          A      R FQALRI VNNE E L   L     AL +GG
Sbjct: 246 TDLKNVIEKSLCVVPQKERKEAVKKSCARVFQALRIDVNNEFEVLYDFLEKLPDALASGG 305

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            + V++FHS EDRLVKK F +   +               V+  + K V+ P+ E+   N
Sbjct: 306 RVAVLTFHSGEDRLVKKSFKALQKQ--------------GVYSEVAKDVIRPSAEECNTN 351

Query: 304 RRSRSAKLRAGMR 316
            R+RS K+R  ++
Sbjct: 352 PRARSTKMRWAIK 364


>gi|33864313|ref|NP_895873.1| S-adenosyl-methyltransferase MraW [Prochlorococcus marinus str. MIT
           9313]
 gi|42559451|sp|Q7V4B2|RSMH_PROMM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|33641093|emb|CAE22222.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
           9313]
          Length = 310

 Score =  153 bits (387), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 105/293 (35%), Positives = 161/293 (54%), Gaps = 25/293 (8%)

Query: 37  GKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQ 94
           G +I+DAT G GG+S    +   ++  I LD+DP A +   E +  + ++ ++    F  
Sbjct: 36  GGLIIDATLGGGGHSALLLERHPDLRLIGLDQDPTARAAAAERLALFGDRVTIVATNFV- 94

Query: 95  LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANV 153
             D+ P +    V+ DLGVSS Q+D   RGFSF+  GPLDMRM+   G +A++++ +   
Sbjct: 95  --DFSPAEPAVVVMADLGVSSPQLDVAQRGFSFRLDGPLDMRMNPQVGETAAELIGRLEE 152

Query: 154 KDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPAT 211
            +L  ++   GEE+ + RIA  I     +  P+  T  L+  +       +++ RIHPAT
Sbjct: 153 TELADLIYAYGEERLSRRIARRIKHDLAEQGPYAGTAALAYAVAGCYPPKARHGRIHPAT 212

Query: 212 RSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMA 271
           R+FQALRI VNNE++ L + L+ A   L  GGLL V+SFHSLEDR VK  F  R  ++  
Sbjct: 213 RTFQALRIAVNNELDALDRFLQKAPDWLVPGGLLAVISFHSLEDRRVKTAFL-RDQRL-- 269

Query: 272 VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIED 324
                         + +T+K +V ++ ++A N RSRSAK R   R  + +  D
Sbjct: 270 --------------ERLTRKPLVASEMEIAANPRSRSAKCRFARRLPQATTAD 308


>gi|261749334|ref|YP_003257019.1| S-adenosyl-methyltransferase MraW [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
 gi|261497426|gb|ACX83876.1| S-adenosyl-methyltransferase MraW [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
          Length = 297

 Score =  153 bits (387), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 110/301 (36%), Positives = 160/301 (53%), Gaps = 21/301 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H PVLL++ I  L      + +D TFG GG+S +  K     +++IA D+D  A+     
Sbjct: 5   HEPVLLKESIDNLVTDRNGIYVDVTFGGGGHSSAILKKLNENASLIAFDQDKEAIK--NN 62

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +RD   +  LF   F  L+  +     + V GV+ DLG+SS QID   RGFS Q +  L
Sbjct: 63  PIRD--RRLHLFHKNFIHLKPILKKLRIEKVSGVLADLGLSSSQIDNPIRGFSHQLNCIL 120

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  S  SA D++N+ + ++L  I    GE K A  IA  I++ R   P  TT DL 
Sbjct: 121 DMRMNQESTHSAIDIINRYSKEELFHIFYKYGEFKNAIIIAEKILEERLRKPITTTWDLV 180

Query: 193 SLI-QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +  +K   F K  R    +R FQ++RI VNNEI  L   L  +   +  GG + ++S+H
Sbjct: 181 KIFFRKKTSFKKRKRF--FSRLFQSIRIEVNNEINVLKNFLLESSTIILPGGRMAIISYH 238

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           S+EDR+ K FF         + +++P       F+ I KKV+ P  +D+  N RSRSA+L
Sbjct: 239 SIEDRITKYFFKKGVFHKKKMNNILP-------FKMIHKKVIQPRYQDIINNPRSRSARL 291

Query: 312 R 312
           R
Sbjct: 292 R 292


>gi|153952604|ref|YP_001398362.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp.
           doylei 269.97]
 gi|263445759|sp|A7H4D2|RSMH_CAMJD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|152940050|gb|ABS44791.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp.
           doylei 269.97]
          Length = 310

 Score =  153 bits (386), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 108/302 (35%), Positives = 162/302 (53%), Gaps = 13/302 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77
           H+PVLL +V  +         LD T G GG+S +  K   G   IA D+D  A+   ++ 
Sbjct: 5   HIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSETLLKNHPGLKFIACDQDQQALEFSKKR 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
           ++D+  + +  Q+ FS++ + +  K  + G++ D+GVSS Q+D  +RGFS   S  LDMR
Sbjct: 65  LKDFHNRITFIQSNFSEVLEKISHKEELRGILADIGVSSFQLDNNERGFSVN-SDFLDMR 123

Query: 137 MS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M+  S ISA +VVN    + LT I    GE   A  IA  I   R     ++ ++L  +I
Sbjct: 124 MNQNSKISAYEVVNAYTKEQLTSIFKDYGELHDAHFIAEKICLERSKNLIKSAKELYQII 183

Query: 196 QKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
            K     +N+R I  AT +FQA+RI VN E++ L   L   E       +L ++SFHSLE
Sbjct: 184 GKG---KQNHRKISKATLAFQAIRIEVNQELKVLKDFLGYLENLKPKNCILAIISFHSLE 240

Query: 255 DRLVKKFFASRSGKVMAVRHMIPS---NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           DR+VK FF   S   +    ++     N H ++ Q ITKK +  ++E++  N RS  AK+
Sbjct: 241 DRIVKNFFKKWSKNCICDEKIMRCKCGNNH-SLGQIITKKSISASKEELLKNSRSSCAKM 299

Query: 312 RA 313
           RA
Sbjct: 300 RA 301


>gi|228469401|ref|ZP_04054415.1| S-adenosyl-methyltransferase MraW [Porphyromonas uenonis 60-3]
 gi|228309085|gb|EEK17715.1| S-adenosyl-methyltransferase MraW [Porphyromonas uenonis 60-3]
          Length = 310

 Score =  153 bits (386), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 117/321 (36%), Positives = 168/321 (52%), Gaps = 36/321 (11%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           MS+ ++HT      VL E  + LL   P  + +D T G GG+SR+  +  S     I LD
Sbjct: 1   MSTKLYHTA-----VLCEDSLNLLVTTPSGLYVDVTMGGGGHSRALLERLSPEGRCIGLD 55

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQAT----FSQLQDYVPDKG-VDGVVFDLGVSSMQIDC 120
           +DP A++   +  R +      F AT      Q  DY    G VDG++ DLGVSS   D 
Sbjct: 56  QDPDAMANAPQDSRYH------FVATNFRYLGQWLDYWGLAGEVDGILADLGVSSHHFDS 109

Query: 121 GDRGFSFQKSGPL-DMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178
            +RGFSF+    + DMRM S SG++A D++   + + L  IL   GE   A RIA  +V 
Sbjct: 110 EERGFSFRYEEAMPDMRMNSRSGVTARDLLLSYSEEQLADILYYYGELHDARRIAALLVS 169

Query: 179 RRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
            R +  + T   L  ++   +        +  +R FQALRI VN+E+  L Q L  + + 
Sbjct: 170 HR-AVGYPTIASLMEVLAPVLPKGGPQLRNKLSRIFQALRIEVNDELGALRQLLSDSVRL 228

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA-------HPAVFQSITKK 291
           LK GG + ++S+HSLEDR+VK+FF  R G         PS A        PA  + +TKK
Sbjct: 229 LKPGGRIAIISYHSLEDRMVKEFF--RLGSFEQ-----PSEALAGMPLSKPAPLRVVTKK 281

Query: 292 VVVPTQEDVAFNRRSRSAKLR 312
            + P+ +++A N R+RSAKLR
Sbjct: 282 AITPSADEIADNNRARSAKLR 302


>gi|331085870|ref|ZP_08334953.1| ribosomal RNA small subunit methyltransferase H 1 [Lachnospiraceae
           bacterium 9_1_43BFAA]
 gi|330406793|gb|EGG86298.1| ribosomal RNA small subunit methyltransferase H 1 [Lachnospiraceae
           bacterium 9_1_43BFAA]
          Length = 374

 Score =  153 bits (386), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 103/319 (32%), Positives = 169/319 (52%), Gaps = 32/319 (10%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF--CKMGS-NVIALDRDPFAVSC 73
           +G H+ + +++++  L   PG+  LDAT G GG+++    C  G  ++ ALD DP     
Sbjct: 72  VGMHISICVKEILDFLQIQPGQKGLDATLGYGGHTKEMLKCLQGQGHLYALDVDPIESVK 131

Query: 74  GQETMRD--YKEQ-FSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQK 129
            +E +    Y E+  ++ Q  F+ +     + G  D V+ DLGVSSMQID  +RGF+++K
Sbjct: 132 TKERLEKAGYGEEILTIRQMNFADIDQIAREAGPFDFVLADLGVSSMQIDNPERGFTYKK 191

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQT 187
            GPLD+R++   G+SA++ + +   ++L  +L    +E  A  IA  ++++ R+  P +T
Sbjct: 192 EGPLDLRLNPQKGVSAAERLKEVTEEELAGMLWENSDEPYAEEIAATVMEKLRKGEPVET 251

Query: 188 TQDLSSLIQKTVYFSKNNRIHPAT-----RSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           T  L   I++ + F        A      R+FQALRI VN+E E L   +     AL  G
Sbjct: 252 TIQLQKAIEEALSFLPEREQKEAVKKSCQRTFQALRIDVNSEFEVLYAFMEKLPAALAPG 311

Query: 243 GLLIVVSFHSLEDRLVKKFFAS--RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300
           G + +++FHS EDR+VKK F    R+G                ++  I + V+ P+ E+ 
Sbjct: 312 GRVAILTFHSGEDRIVKKAFKELKRAG----------------IYSEIAQDVIRPSAEEC 355

Query: 301 AFNRRSRSAKLRAGMRTVE 319
             N R+RS K+R  +R  E
Sbjct: 356 TRNSRARSTKMRWAVRAKE 374


>gi|57167704|ref|ZP_00366844.1| S-adenosyl-methyltransferase MraW [Campylobacter coli RM2228]
 gi|57020826|gb|EAL57490.1| S-adenosyl-methyltransferase MraW [Campylobacter coli RM2228]
          Length = 311

 Score =  152 bits (385), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 105/303 (34%), Positives = 158/303 (52%), Gaps = 15/303 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           H+PVLL +V            LD T G GG+S S  K   N+  IA D+D  A+   ++ 
Sbjct: 5   HIPVLLNEVNQAFEKLNSGYFLDCTLGFGGHSESLLKDHPNLKLIACDQDKEALEFSKKR 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVP-DKGVD--GVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           + D+K++     + FSQ+ D +  DK  D  G++ D+GVSS Q+D   RGF+   S  LD
Sbjct: 65  LHDFKDRTEFVLSNFSQILDQISHDKLNDLKGILADIGVSSYQLDNNKRGFNLH-SDFLD 123

Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM+    ISA +++N    + L+ I    GE      IA  I + RQ    ++ ++L  
Sbjct: 124 MRMNQDVKISAFELINNYTQEQLSDIFKKYGELNDGYFIAQKICQERQKNKIKSAKELYE 183

Query: 194 LIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +I KT    +N+R +  AT  FQA+RI VN E+E L   L   EK      +L ++ FHS
Sbjct: 184 IIGKT---KQNHRSVSKATLVFQAIRIEVNQELEVLKNFLEKLEKIKLKNCILAIICFHS 240

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPS---NAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           LEDR+VK +F   +   +           N H ++ + I KK + P++E++  N RS  A
Sbjct: 241 LEDRIVKNYFKKWAKNCICDERAFRCECGNNH-SLGEIINKKAITPSKEEIMINSRSSCA 299

Query: 310 KLR 312
           K+R
Sbjct: 300 KMR 302


>gi|283953941|ref|ZP_06371470.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp.
           jejuni 414]
 gi|283794546|gb|EFC33286.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp.
           jejuni 414]
          Length = 309

 Score =  152 bits (385), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 103/302 (34%), Positives = 162/302 (53%), Gaps = 13/302 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           H+PVLL +V  +         LD T G GG+S +  K   N+  IA D+D  A+   ++ 
Sbjct: 5   HIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKNHPNLKFIACDQDQQALEFSKKR 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDK-GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
           +  + ++ +  Q+ F ++ + +  K  + G++ D+GVSS Q+D  +RGFS   S  LDMR
Sbjct: 65  LEHFHDRITFIQSNFGEILEKISHKEDLRGILADIGVSSFQLDNNERGFSLN-SDFLDMR 123

Query: 137 MS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M+  S ISA ++VN    + LT I    GE   A  IA  I   R   P ++ ++L  +I
Sbjct: 124 MNQNSKISAYEIVNTYTKEQLTSIFKEYGELHDAHFIAEKICLARNKNPIKSAKELCQII 183

Query: 196 QKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
            K+    +N+R I  AT  FQA+RI VN E++ L    +  E       +L +++FHSLE
Sbjct: 184 GKS---KQNHRKISKATLVFQAIRIEVNQELKVLKDFFKYLENLKPKNCILAIINFHSLE 240

Query: 255 DRLVKKFFASRSGKVMAVRHMIPS---NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           DR+VK FF   +   +    ++     N H ++ Q ITKK +  ++E++  N RS  AK+
Sbjct: 241 DRIVKNFFKKWAKNCICDEKIMRCECGNNH-SLGQIITKKAISASKEELLKNSRSSCAKM 299

Query: 312 RA 313
           RA
Sbjct: 300 RA 301


>gi|268680046|ref|YP_003304477.1| S-adenosyl-methyltransferase MraW [Sulfurospirillum deleyianum DSM
           6946]
 gi|268618077|gb|ACZ12442.1| S-adenosyl-methyltransferase MraW [Sulfurospirillum deleyianum DSM
           6946]
          Length = 304

 Score =  152 bits (385), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 105/299 (35%), Positives = 163/299 (54%), Gaps = 11/299 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           H+PVLLE+V A  +     VI+D T G GG+S +  +   ++  I  D+D  A++  ++ 
Sbjct: 5   HIPVLLEEVKAAFSNISDGVIIDCTLGYGGHSEALLEQNPHIRLIGCDQDEEALAFSKKR 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
           +  + E+       F+ +        + G++ D+GVSS+Q+D  +RGF+F  S  LDMRM
Sbjct: 65  LERFGERVMFHHGNFASVIAQYAHLPIRGILADIGVSSLQLDKKERGFAFD-SEVLDMRM 123

Query: 138 S-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
           +    +SA +VVN    + L  I    GE     ++A  + + R  AP Q+ ++LS L Q
Sbjct: 124 NPHQSLSAYEVVNHYTKEQLEFIFREYGEIHAYQKMAQLMCEARLKAPIQSAKELSFLAQ 183

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
           K         IHPAT  FQA+RI VNNE+  L Q L S + A     ++ ++SFHSLEDR
Sbjct: 184 K---IPGKKSIHPATLLFQAIRIEVNNELGVLTQLLESIQNAGFTQCIVGIISFHSLEDR 240

Query: 257 LVKKFFASRSGKVMAVRHM---IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           +VK+ F   S   +   H+   +  N H A+ + I+KK +  +  ++  N RSRSA+LR
Sbjct: 241 IVKQTFKFWSQNCICPPHVMRCMCGNNH-ALGKIISKKPIEASPLELKKNPRSRSARLR 298


>gi|330950233|gb|EGH50493.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae Cit 7]
          Length = 187

 Score =  152 bits (385), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 81/180 (45%), Positives = 117/180 (65%), Gaps = 6/180 (3%)

Query: 88  FQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GI 142
            Q +F++L     ++G    V G++ DLGVSS Q+D  +RGFSF   GPLDMRM  + G+
Sbjct: 1   MQRSFAELGSETQERGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDGPLDMRMDPTRGV 60

Query: 143 SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS 202
           SA++ +  A  +++ R+    GEE+ A R+A+A+V RR+  PF  T DL+ ++ K    +
Sbjct: 61  SAAEFIATAPAEEIARVFKEYGEERFAKRMANAVVARREVQPFDRTADLAEVL-KVANPA 119

Query: 203 KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF 262
                +PATR+FQ LRI VNNE+ +L  GL +A  AL+ GG L+V+SFHSLEDR+VK F 
Sbjct: 120 WEKGKNPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLVVISFHSLEDRIVKLFM 179


>gi|160878432|ref|YP_001557400.1| S-adenosyl-methyltransferase MraW [Clostridium phytofermentans
           ISDg]
 gi|263433271|sp|A9KS30|RSMH1_CLOPH RecName: Full=Ribosomal RNA small subunit methyltransferase H 1;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase 1;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH 1
 gi|160427098|gb|ABX40661.1| S-adenosyl-methyltransferase MraW [Clostridium phytofermentans
           ISDg]
          Length = 366

 Score =  152 bits (384), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 106/315 (33%), Positives = 164/315 (52%), Gaps = 32/315 (10%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCG 74
           G H+ + + +++  L   PG+  LDAT G GG++R   K      ++ ALD DP  +   
Sbjct: 67  GMHISICVNEILEFLQIKPGQKGLDATLGYGGHTREMLKCLESQGHMYALDVDPIEIVKT 126

Query: 75  QETMRDY---KEQFSLFQATFSQLQDYVPDKGV-DGVVFDLGVSSMQIDCGDRGFSFQKS 130
           +E +++     E  ++ Q  F+ + + V + G+ D V+ DLGVSSMQID  DRGFSF+  
Sbjct: 127 RERLQNLGFGPEILTIKQLNFANIDEVVEEAGLFDFVLADLGVSSMQIDDPDRGFSFKTD 186

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTT 188
           GPLD+R++   GISA++ +   +  +L  +L    +E  +  I+ AIV   ++     TT
Sbjct: 187 GPLDLRLNPEKGISAAERLKTISQTELQGMLLENSDEPYSEEISKAIVNEIKRGNEIDTT 246

Query: 189 QDLSSLIQKTVYFSKNNRIHPAT-----RSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
             L  LI K +     N    A      R+FQALRI VNNE E L   L      L  GG
Sbjct: 247 TKLRDLISKVLVTIPENEQKEAIKKTCQRTFQALRIDVNNEYEVLYSFLEKLPNVLAKGG 306

Query: 244 LLIVVSFHSLEDRLVKKFFAS--RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
            + +++FHS EDRLVKK F +  R+G                ++  ++  V+ P+ E+  
Sbjct: 307 RVAILTFHSGEDRLVKKSFKNLQRAG----------------IYSEVSDDVIRPSAEECN 350

Query: 302 FNRRSRSAKLRAGMR 316
            N R+RS K+R  ++
Sbjct: 351 RNPRARSTKMRWAIK 365


>gi|263447881|sp|A7ZD05|RSMH_CAMC1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 307

 Score =  152 bits (384), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 106/304 (34%), Positives = 165/304 (54%), Gaps = 18/304 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           H+ VLL++V++      G  I D T G  G+S +      N+  IA D+D  A++   + 
Sbjct: 5   HISVLLDEVLSFFKDLRGNFI-DCTLGYAGHSSAILSQNENLNLIACDKDIEAINFSLKK 63

Query: 78  MRDYKEQFSLFQATFSQL-----QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           +  +  +  ++++ FS+L      D + +  V G++ D+GVSS+QID  DRGF    S  
Sbjct: 64  LEPFGSRVKIYKSNFSELISKLSSDEISN--VRGILADIGVSSLQIDKDDRGFGLGSS-A 120

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM    G SA DVVN  +  +L RI    GE K AS IA+ I+  R      + ++L
Sbjct: 121 LDMRMDKERGFSAYDVVNGYSFDELVRIFRDYGELKNASGIANKIINARNLGEITSAKEL 180

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           +++I   +   K   + PA  +FQA+RI VN E++EL   L S EK      L+ +++FH
Sbjct: 181 ANII--GIAQIKGRGVSPAILAFQAIRIEVNGELDELTNLLDSIEKGGFKDCLVTIITFH 238

Query: 252 SLEDRLVKKFFASRSGKVM---AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SLEDR+VK+ F   +   +    +      N H  + + +TKK +  +Q ++A N RS+S
Sbjct: 239 SLEDRIVKERFKKWANSCICPPGIYRCECGNNHE-LGEILTKKPLTASQSELAQNSRSKS 297

Query: 309 AKLR 312
           AKLR
Sbjct: 298 AKLR 301


>gi|47459215|ref|YP_016077.1| S-adenosylmethionine-dependent methyltransferase [Mycoplasma mobile
           163K]
 gi|51316218|sp|Q6KHR2|RSMH_MYCMO RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|47458544|gb|AAT27866.1| S-adenosylmethionine-dependent methyltransferase [Mycoplasma mobile
           163K]
          Length = 302

 Score =  152 bits (384), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 98/308 (31%), Positives = 168/308 (54%), Gaps = 18/308 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H+P+LL +V++  N     V++D T G  G+S+   K      +I +D+D  A++  +E 
Sbjct: 6   HIPILLNEVLSAFNLKETDVVIDLTLGRAGHSQEMLKKIPKGLLIGIDKDKSAITFSKEK 65

Query: 78  MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +      F LF + FS++ D + +     V+ ++ DLG+SS QID  +RGFS+ K   LD
Sbjct: 66  LEQIGSNFKLFHSDFSKISDLLKELKISKVNAILIDLGISSPQIDNANRGFSYNKESRLD 125

Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM+    + A  +VN  + + L  +L    E K + +IA  I   R   P +TT  LS 
Sbjct: 126 MRMNLDQKLDAHFIVNSYSEEQLKNLLYRNAEIKNSRQIAKIITSNR---PIETTLQLSV 182

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           +++K +      +  P+   FQALR+ VN+EI  L   L++    L+  G + +++F+S+
Sbjct: 183 ILKKYLPAFIVRKKDPSKAVFQALRVEVNDEINSLNFLLKNLVSILEENGKVAIITFNSI 242

Query: 254 EDRLVKKFFAS-RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           EDR+VKK+F S     V+A    +P+       +    K  +P+++++  N RS+SAK+R
Sbjct: 243 EDRIVKKYFGSFIKDDVLA---FLPTKKE----KEFEVKTYLPSKKELEENPRSKSAKMR 295

Query: 313 AGMRTVER 320
             ++ +ER
Sbjct: 296 V-LKKIER 302


>gi|88809878|ref|ZP_01125384.1| methyltransferase [Synechococcus sp. WH 7805]
 gi|88786262|gb|EAR17423.1| methyltransferase [Synechococcus sp. WH 7805]
          Length = 312

 Score =  152 bits (384), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 105/311 (33%), Positives = 160/311 (51%), Gaps = 37/311 (11%)

Query: 20  HVPVLLEKVIALLNPAPGK-----VILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVS 72
           HVPVL + ++  L+  P       +++DAT G GG+S        G  +I LD+D  A +
Sbjct: 14  HVPVLADVLLKTLDQEPSDHWQSGLVVDATLGGGGHSSLLLDRYPGLRLIGLDQDATARA 73

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                +R ++E+ ++    F+   DY P      V+ DLGVSS Q+D   RGFSF+  GP
Sbjct: 74  AAAARLRPWQERVTIVATNFA---DYSPPGSASLVLADLGVSSPQLDVAQRGFSFRLDGP 130

Query: 133 LDMRMS--CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           LDMRM+    G +A+ ++ +    DL  ++   GEE+ + RIA  I   +     Q T  
Sbjct: 131 LDMRMNPEGGGETAAQLIERLKESDLADLIYAYGEERLSRRIARRI---KADLAVQGTYS 187

Query: 191 LSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            ++ +   +       ++  RIHPATR+FQALRI VN+E+  L + L  +   L+ GG+L
Sbjct: 188 GTAALAYAIAGCYPPKARRGRIHPATRTFQALRIAVNHELAALDRLLEQSPDWLQPGGML 247

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
            ++SFHSLEDR VK  F                       + IT++ +  ++++   N R
Sbjct: 248 AIISFHSLEDRRVKTAF-----------------LQDERLERITRRPLTASEDEQERNAR 290

Query: 306 SRSAKLRAGMR 316
           SRSAKLR   R
Sbjct: 291 SRSAKLRIARR 301


>gi|325662020|ref|ZP_08150639.1| ribosomal RNA small subunit methyltransferase H 1 [Lachnospiraceae
           bacterium 4_1_37FAA]
 gi|325471683|gb|EGC74902.1| ribosomal RNA small subunit methyltransferase H 1 [Lachnospiraceae
           bacterium 4_1_37FAA]
          Length = 374

 Score =  152 bits (384), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 103/319 (32%), Positives = 169/319 (52%), Gaps = 32/319 (10%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF--CKMGS-NVIALDRDPFAVSC 73
           +G H+ + +++++  L   PG+  LDAT G GG+++    C  G  ++ ALD DP     
Sbjct: 72  VGMHISICVKEILDFLQIQPGQKGLDATLGYGGHTKEMLKCLQGQGHLYALDVDPIESVK 131

Query: 74  GQETMRD--YKEQ-FSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQK 129
            +E +    Y E+  ++ Q  F+ +     + G  D V+ DLGVSSMQID  +RGF+++K
Sbjct: 132 TKERLEKAGYGEEILTIRQMNFADIDQIAREAGPFDFVLADLGVSSMQIDNPERGFTYKK 191

Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQT 187
            GPLD+R++   G+SA++ + +   ++L  +L    +E  A  IA  ++++ R+  P +T
Sbjct: 192 EGPLDLRLNPQKGVSAAERLKEVTEEELAGMLWENSDEPYAEEIAVTVMEKLRKGEPVET 251

Query: 188 TQDLSSLIQKTVYFSKNNRIHPAT-----RSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           T  L   I++ + F        A      R+FQALRI VN+E E L   +     AL  G
Sbjct: 252 TIQLQKAIEEALSFLPEREQKEAVKKSCQRTFQALRIDVNSEFEVLYAFMEKLPAALAPG 311

Query: 243 GLLIVVSFHSLEDRLVKKFFAS--RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300
           G + +++FHS EDR+VKK F    R+G                ++  I + V+ P+ E+ 
Sbjct: 312 GRVAILTFHSGEDRIVKKAFKELKRAG----------------IYSEIAQDVIRPSAEEC 355

Query: 301 AFNRRSRSAKLRAGMRTVE 319
             N R+RS K+R  +R  E
Sbjct: 356 TRNSRARSTKMRWAVRAKE 374


>gi|302387032|ref|YP_003822854.1| S-adenosyl-methyltransferase MraW [Clostridium saccharolyticum WM1]
 gi|302197660|gb|ADL05231.1| S-adenosyl-methyltransferase MraW [Clostridium saccharolyticum WM1]
          Length = 349

 Score =  152 bits (384), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 109/316 (34%), Positives = 166/316 (52%), Gaps = 32/316 (10%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCG 74
           G H  + +++++  L   PG+  LDAT G GG++    K      ++ A D D   +   
Sbjct: 50  GMHRSICVKEILDFLQITPGQTGLDATLGYGGHTLEMLKCLNSKGHLYATDVDSIELPRT 109

Query: 75  QETMRDY---KEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           +E +       E  ++ Q  FS +     + G ++ ++ DLGVSSMQID  +RGFSF+  
Sbjct: 110 RERLEHLGYGSEILTIRQTNFSNIDQITSESGPLNFILADLGVSSMQIDNPERGFSFKTE 169

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTT 188
           GPLD+R++ S GISA+D +   + ++L  +L    +E  A+ IA AIV   ++     TT
Sbjct: 170 GPLDLRLNPSKGISAADRLKTISQEELHGMLLENADEPHAAEIAGAIVTAIKKGTDITTT 229

Query: 189 QDLSSLIQKTVYF----SKNNRIHPAT-RSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
             L  +IQ  + F     +NN I  +  RSFQALRI VNNE E L + L     AL  GG
Sbjct: 230 SQLQQIIQDALKFIPEKERNNEIKKSCQRSFQALRIDVNNEFEVLYEFLEKLPAALAEGG 289

Query: 244 LLIVVSFHSLEDRLVKKFFAS--RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
            + +++FHS EDRLVKK F    R G                V++ IT + + P+  + +
Sbjct: 290 RVAILTFHSGEDRLVKKSFQRFYREG----------------VYKEITPEAIRPSAAECS 333

Query: 302 FNRRSRSAKLRAGMRT 317
            N R+R AKLR  +++
Sbjct: 334 SNSRARCAKLRWAIKS 349


>gi|239624706|ref|ZP_04667737.1| S-adenosyl-methyltransferase MraW [Clostridiales bacterium
           1_7_47_FAA]
 gi|239521092|gb|EEQ60958.1| S-adenosyl-methyltransferase MraW [Clostridiales bacterium
           1_7_47FAA]
          Length = 362

 Score =  152 bits (384), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 107/317 (33%), Positives = 168/317 (52%), Gaps = 32/317 (10%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF--CKMG-SNVIALDRDPFAVSC 73
           +G H+ +++++++  L   PG+  LDAT G GG+++    C  G  ++ ALD D   ++ 
Sbjct: 62  VGMHISIMVKEILDFLEIQPGQTGLDATLGYGGHTQEMLKCLQGQGHLHALDVDTIEMAK 121

Query: 74  GQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQK 129
            +E +       E  ++ Q  F+ +     + G  D V+ DLGVSSMQID  +RGFSF+K
Sbjct: 122 TRERLGKLGYGLEILTIRQLNFADIDQLAAETGPFDFVLADLGVSSMQIDNPERGFSFKK 181

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQT 187
            GPLD+R+  S GI AS+ +   + ++LT +L    +E  A  I+ A+V R ++     T
Sbjct: 182 DGPLDLRLDSSRGIPASERLRHISREELTGMLIENSDEPYAEEISRAVVNRIKRGDGIDT 241

Query: 188 TQDLSSLIQKTVYFSKNNRIHPAT-----RSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           T  L   I++T+ F   +    A      R+FQALRI +N+E E L Q L      L  G
Sbjct: 242 TTQLRETIEQTLSFIPESDRKEAVKKSCQRTFQALRIDINSEFEVLYQFLEKLPDVLAKG 301

Query: 243 GLLIVVSFHSLEDRLVKKFFAS--RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300
           G + V++FHS EDR+VKK F    R G                V+  I   V+ P+ E+ 
Sbjct: 302 GRVAVLTFHSGEDRIVKKSFKDLYRQG----------------VYSEIAGDVIRPSAEEC 345

Query: 301 AFNRRSRSAKLRAGMRT 317
           + N R+RS K+R  +++
Sbjct: 346 SMNSRARSTKMRWAIKS 362


>gi|116511689|ref|YP_808905.1| SAM-dependent methyltransferase for cell envelope biogenesis
           [Lactococcus lactis subsp. cremoris SK11]
 gi|116107343|gb|ABJ72483.1| SAM-dependent methyltransferase for cell envelope biogenesis
           [Lactococcus lactis subsp. cremoris SK11]
 gi|300071267|gb|ADJ60667.1| S-adenosyl-methyltransferase MraW [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 298

 Score =  152 bits (383), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 101/296 (34%), Positives = 163/296 (55%), Gaps = 11/296 (3%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFC-KMGS-NVIALDRDPFAVSCGQETMRDY--KEQFS 86
           +L   P  + +DAT G  G+S     K+ + ++ + D+D  A +  +  + +   +++ +
Sbjct: 1   MLEVKPNGIYVDATLGGAGHSEYLLSKLTTGHLYSFDQDETAHANAKVRLSEQLAEDKVT 60

Query: 87  LFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GI 142
           L ++ F  L+  + +     +DG+++DLGVSS Q D   RGFS++K   LDMRM  S  +
Sbjct: 61  LIKSNFRNLKSALAELDITKIDGILYDLGVSSPQFDDSQRGFSYKKEARLDMRMDQSQTL 120

Query: 143 SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS 202
           SA +VVN    + L RI    GE+K + +IA  I + R+  P +TT +L+ LI+  +   
Sbjct: 121 SAYEVVNDYPYEALVRIFFRYGEDKFSKQIARKIEQSRKIKPIETTIELADLIKSALPQK 180

Query: 203 K-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKF 261
           +   + HPA R FQA+RI VN+E+    + +  A   LK  G + V++FHSLEDRL K  
Sbjct: 181 ELKKKGHPAKRIFQAIRIEVNDELGAAEESIEQAIDLLKVDGRISVITFHSLEDRLTKSI 240

Query: 262 FASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           F   S   V     M+P     A  + I +K V+ ++E++ FN R+ SAKLR   +
Sbjct: 241 FKEYSTVNVPKGLPMLPKEME-AKLKLINRKPVLASEEELEFNNRAHSAKLRVAQK 295


>gi|32475279|ref|NP_868273.1| methyltransferase [Rhodopirellula baltica SH 1]
 gi|42559448|sp|Q7UFX8|RSMH_RHOBA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|32445820|emb|CAD78551.1| conserved hypothetical protein-putative methyltransferase
           [Rhodopirellula baltica SH 1]
          Length = 325

 Score =  152 bits (383), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 107/314 (34%), Positives = 164/314 (52%), Gaps = 33/314 (10%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM----GSN-----VIALDRDPF 69
           +HV V+  +++  +       I+D T+G GG++R   ++    GS+     VIA+DRDP 
Sbjct: 27  EHVSVMPNEIVQWVREINPTTIIDGTYGGGGHTRLLAEVLADAGSDSDTPRVIAIDRDPA 86

Query: 70  AVSCG-QETMRDYKEQFSLFQATFS---QLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125
            V    Q++      +  LF  ++    +  D +     D +V DLG+SS Q+   +RGF
Sbjct: 87  VVRRDEQKSWIKDDPRIELFLGSYESSPKALDALDLTHADALVLDLGLSSDQLADRNRGF 146

Query: 126 SFQ-KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQS 182
           +F      LD+R    +G+ A   + Q + K++   +   GEE+ + RIA  I  R R+ 
Sbjct: 147 TFTIDDAELDLRFDPENGVPAHRWLQQHSEKEIADAIYRFGEERFSRRIAKQIFLRARER 206

Query: 183 APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
            P     +L  + ++ V  S+N+ IHPATR+FQALRI VN+E+  L + L+SA   +  G
Sbjct: 207 NPVTKVGELVEICRRCVPRSRNHDIHPATRTFQALRIAVNDELGGLTRTLQSAPDWIAPG 266

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G + V+SFHSLEDR+VK  F                      ++ +TKK + PT E+V  
Sbjct: 267 GRVAVISFHSLEDRIVKNAFREDHR-----------------WEILTKKPLRPTDEEVQA 309

Query: 303 NRRSRSAKLRAGMR 316
           N RSRSAKLR   R
Sbjct: 310 NPRSRSAKLRVAKR 323


>gi|307297403|ref|ZP_07577209.1| S-adenosyl-methyltransferase MraW [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306916663|gb|EFN47045.1| S-adenosyl-methyltransferase MraW [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 299

 Score =  152 bits (383), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 95/273 (34%), Positives = 151/273 (55%), Gaps = 28/273 (10%)

Query: 41  LDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD 97
           +D T G GG+ R+  +     + +I LD D   ++  ++ ++DY+E   LF  ++   + 
Sbjct: 31  IDCTAGEGGHIRAMLEATEGQAKIIGLDVDSEVLNIAEQNLKDYRESVELFNLSYVDFEI 90

Query: 98  YVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANV 153
            +   GV   DG + D+GVS+ Q+    RGFS++   PLDMRM+ S   +A+DVVN    
Sbjct: 91  ALRQAGVEKVDGFLLDVGVSTFQLKAKGRGFSYELDEPLDMRMNLSQKRTAADVVNSYRE 150

Query: 154 KDLTRILGILGEEKQ-ASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSK--NNRIHPA 210
            +L+RI+   G+EK+ A +IA +IV RR   P  TT+DL   I+  +  ++    R H A
Sbjct: 151 DELSRIIFEFGDEKRFARKIARSIVSRR---PLFTTKDLHDAIKAAIPPAERYKRRRHFA 207

Query: 211 TRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVM 270
           T++FQA+RI VN E+E +   LR     L  GG ++++SFHSLED + K+ F  +S   +
Sbjct: 208 TKTFQAVRIEVNQELENIESTLRKIPGFLNQGGRIVIISFHSLEDGIAKRVFREKSESEL 267

Query: 271 AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            +               +TKK V P++E+V  N
Sbjct: 268 KI---------------LTKKPVQPSKEEVELN 285


>gi|157164915|ref|YP_001466663.1| S-adenosyl-methyltransferase MraW [Campylobacter concisus 13826]
 gi|112800495|gb|EAT97839.1| S-adenosyl-methyltransferase MraW [Campylobacter concisus 13826]
          Length = 334

 Score =  152 bits (383), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 105/302 (34%), Positives = 163/302 (53%), Gaps = 14/302 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           H+ VLL++V++      G  I D T G  G+S +      N+  IA D+D  A++   + 
Sbjct: 32  HISVLLDEVLSFFKDLRGNFI-DCTLGYAGHSSAILSQNENLNLIACDKDIEAINFSLKK 90

Query: 78  MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +  +  +  ++++ FS+L   +       V G++ D+GVSS+QID  DRGF    S  LD
Sbjct: 91  LEPFGSRVKIYKSNFSELISKLSSDEISNVRGILADIGVSSLQIDKDDRGFGLGSS-ALD 149

Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM    G SA DVVN  +  +L RI    GE K AS IA+ I+  R      + ++L++
Sbjct: 150 MRMDKERGFSAYDVVNGYSFDELVRIFRDYGELKNASGIANKIINARNLGEITSAKELAN 209

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           +I   +   K   + PA  +FQA+RI VN E++EL   L S EK      L+ +++FHSL
Sbjct: 210 II--GIAQIKGRGVSPAILAFQAIRIEVNGELDELTNLLDSIEKGGFKDCLVTIITFHSL 267

Query: 254 EDRLVKKFFASRSGKVMA---VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           EDR+VK+ F   +   +    +      N H  + + +TKK +  +Q ++A N RS+SAK
Sbjct: 268 EDRIVKERFKKWANSCICPPGIYRCECGNNHE-LGEILTKKPLTASQSELAQNSRSKSAK 326

Query: 311 LR 312
           LR
Sbjct: 327 LR 328


>gi|88801293|ref|ZP_01116821.1| S-adenosyl-methyltransferase MraW [Polaribacter irgensii 23-P]
 gi|88781951|gb|EAR13128.1| S-adenosyl-methyltransferase MraW [Polaribacter irgensii 23-P]
          Length = 299

 Score =  151 bits (382), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 109/306 (35%), Positives = 162/306 (52%), Gaps = 29/306 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H PVLL++ +  L      + +D TFG GG+S+    ++G +  +   D+DP A+    E
Sbjct: 4   HSPVLLKESVDALAIKENGIYVDVTFGGGGHSKEILSRLGDSGRLFGFDQDPDALENIIE 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             R     F+L    F  +  ++   GV   DG++ DLGVSS Q D  DRGFS +  G L
Sbjct: 64  DAR-----FTLIPENFRYISRFLRFHGVKKVDGILADLGVSSHQFDEADRGFSTRFDGDL 118

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  S +SA +V+   + + L  IL + GE + +  IA  IV++RQ    +T+  L 
Sbjct: 119 DMRMNQKSKVSAKEVIGTYSEEKLAEILFLYGELRNSRNIAKTIVEKRQEEKIETSFQLK 178

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
             +QK +  +  ++I    + FQA+RI VN E+E L + L      LK  G L V+S+HS
Sbjct: 179 EALQKYLPNAVEHKI--LAQIFQAVRIEVNEELEVLKEFLLQTPNLLKEKGRLSVISYHS 236

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI------TKKVVVPTQEDVAFNRRS 306
           LEDRLVK+F   R+G       +         F +I        K++VP  ++V  N R+
Sbjct: 237 LEDRLVKRFI--RTG-------LFIGEPEKDFFGNIEVPMQKVGKLIVPDAKEVKVNNRA 287

Query: 307 RSAKLR 312
           RSAKLR
Sbjct: 288 RSAKLR 293


>gi|94502345|ref|ZP_01308815.1| S-adenosyl-methyltransferase MraW [Candidatus Sulcia muelleri str.
           Hc (Homalodisca coagulata)]
 gi|161833845|ref|YP_001598041.1| S-adenosyl-methyltransferase MraW [Candidatus Sulcia muelleri GWSS]
 gi|259495905|sp|A8Z694|RSMH_SULMW RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|94451100|gb|EAT14055.1| S-adenosyl-methyltransferase MraW [Candidatus Sulcia muelleri str.
           Hc (Homalodisca coagulata)]
 gi|152206335|gb|ABS30645.1| S-adenosyl-methyltransferase MraW [Candidatus Sulcia muelleri GWSS]
          Length = 300

 Score =  151 bits (382), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 98/306 (32%), Positives = 166/306 (54%), Gaps = 17/306 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+PVLL+++++ L      + +D TFG GG+S S     SN   VIA D+D    S    
Sbjct: 5   HIPVLLDEILSFLVKEKNGIYIDTTFGGGGHSLSLLNKLSNKGRVIAFDKD--IDSIKNN 62

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + D   +F+L +  +  ++  +       V G++ DLG+SS QI+   RGFS + +  L
Sbjct: 63  NILD--ARFNLIKTNYRFIKKKIKLFNLNKVSGILADLGISSHQINSPKRGFSIRYNSIL 120

Query: 134 DMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM + + I+A  ++N  +  +L  +L   GE K A  I+  I+K R+    ++T DL 
Sbjct: 121 DMRMDTYNKINAQHIINNYSYNELYNLLIRFGEVKNAKNISKLILKHRKKKYIKSTFDLI 180

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            ++    ++ K N+    ++ FQ+LRI VN+EI  L   L+++   LK GG + V+S+HS
Sbjct: 181 KIL--NFFYKKKNKF--LSKIFQSLRIEVNDEINALKDLLKNSLSILKPGGRIAVISYHS 236

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           +EDR+VKKF  + +   +       +N  P +   +  +++  ++E+   N RSRSA LR
Sbjct: 237 IEDRIVKKFLKTGNFNGIIPYDEYGNNLSPLIL--LEPRIIFSSKEEKKENNRSRSAILR 294

Query: 313 AGMRTV 318
              + +
Sbjct: 295 IAEKKI 300


>gi|154174311|ref|YP_001408418.1| S-adenosyl-methyltransferase MraW [Campylobacter curvus 525.92]
 gi|263445746|sp|A7GYX6|RSMH_CAMC5 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|112802943|gb|EAU00287.1| S-adenosyl-methyltransferase MraW [Campylobacter curvus 525.92]
          Length = 308

 Score =  151 bits (382), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 105/307 (34%), Positives = 170/307 (55%), Gaps = 24/307 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           H+ VLL++V+   +   G  I D T G GG+S +  +   N+  IA D+D  A+   ++ 
Sbjct: 5   HISVLLDEVLDAFHGLSGTFI-DCTLGYGGHSGALLEQNKNLRLIACDKDDEAIEFSKKR 63

Query: 78  MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           + ++ ++  ++++ FSQL   +     K V G++ D+GVSS+Q+D  +RGFS   S  LD
Sbjct: 64  LENFGDRVKIYKSDFSQLIKVLSTDELKNVRGILADIGVSSLQLDKNERGFSIN-SDTLD 122

Query: 135 MRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           MRM  +C   SA+DV+N  + ++L  I    GE   A  +A  IV  R      + ++L+
Sbjct: 123 MRMDRACE-FSAADVINSYSQQNLAEIFSKYGELSNAKALAAKIVSARNLKKITSAKELA 181

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           S+I       ++  + PA  +FQA+R+ VN+E+ EL + L S + A      + ++SFHS
Sbjct: 182 SIIGTGRVNGRS--VSPAILAFQAIRVEVNDELGELNRLLESIKSANLKECKVAIISFHS 239

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNA-------HPAVFQSITKKVVVPTQEDVAFNRR 305
           LEDR+VK  F S      A   + P NA         A+ + +TKK +V +Q+++A N R
Sbjct: 240 LEDRIVKNTFKS-----WAQSCICPPNAMRCKCGNDHAIGKILTKKAIVASQKEIAANPR 294

Query: 306 SRSAKLR 312
           S SAK+R
Sbjct: 295 SSSAKMR 301


>gi|332518989|ref|ZP_08395456.1| S-adenosyl-methyltransferase MraW [Lacinutrix algicola 5H-3-7-4]
 gi|332044837|gb|EGI81030.1| S-adenosyl-methyltransferase MraW [Lacinutrix algicola 5H-3-7-4]
          Length = 300

 Score =  151 bits (382), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 106/303 (34%), Positives = 166/303 (54%), Gaps = 23/303 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76
           H PVLL + +  L+  P  V +D TFG GG+S+   K +G +  + A D+D  A+    +
Sbjct: 6   HNPVLLNETVDGLDIKPNGVYVDVTFGGGGHSKEILKRLGEHGKLFAFDQDADALENKID 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             R     F+L    F  ++ ++   GV   DG++ D GVSS Q D  +RGFS + +  L
Sbjct: 66  DPR-----FTLIHENFRYIKRFLRFHGVKEVDGILADFGVSSHQFDVAERGFSTRFAADL 120

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  + +SA  VVN+ + + + ++L   GE + A  +A  IV  R++   +T+  L 
Sbjct: 121 DMRMNQKNDLSAFHVVNEYDEEQIKQVLLQYGELRAAPAMARLIVDYRKNEVIKTSDQLK 180

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           ++++K +     N+I    + +QA+RI VN EIE L + L    + LK  G L ++S+HS
Sbjct: 181 TILKKFLSPKHENKI--LAQIYQAIRIEVNQEIEALKEFLSQTPEILKPNGRLSLISYHS 238

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV---VVPTQEDVAFNRRSRSA 309
           LEDRLVK+F   R+G         P       F+   KKV   ++P+ E++  N R+RSA
Sbjct: 239 LEDRLVKRFI--RNGLFEGE----PERDVFGRFEVPLKKVGKLIIPSAEEIKINNRARSA 292

Query: 310 KLR 312
           KLR
Sbjct: 293 KLR 295


>gi|293977957|ref|YP_003543387.1| S-adenosyl-methyltransferase MraW [Candidatus Sulcia muelleri DMIN]
 gi|292667888|gb|ADE35523.1| S-adenosyl-methyltransferase MraW [Candidatus Sulcia muelleri DMIN]
          Length = 300

 Score =  151 bits (382), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 98/306 (32%), Positives = 166/306 (54%), Gaps = 17/306 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+PVLL+++++ L      + +D TFG GG+S S     SN   VIA D+D    S    
Sbjct: 5   HIPVLLDEILSFLVKEKNGIYIDTTFGGGGHSLSLLNKLSNKGRVIAFDKD--IDSIKNN 62

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + D   +F+L +  +  ++  +       V G++ DLG+SS QI+   RGFS + +  L
Sbjct: 63  NILD--ARFNLIKTNYRFIKKKIKLFNLNKVSGILADLGISSHQINSPKRGFSIRYNSIL 120

Query: 134 DMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM + + I+A  ++N  +  +L  +L   GE K A  I+  I+K R+    ++T DL 
Sbjct: 121 DMRMDTYNKINAQHIINNYSYNELYNLLIRFGEVKNAKNISKLILKHRKKKYIKSTFDLI 180

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            ++    ++ K N+    ++ FQ+LRI VN+EI  L   L+++   LK GG + V+S+HS
Sbjct: 181 KIL--NFFYKKKNKY--LSKIFQSLRIEVNDEINALKDLLKNSLSILKPGGRIAVISYHS 236

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           +EDR+VKKF  + +   +       +N  P +   +  +++  ++E+   N RSRSA LR
Sbjct: 237 IEDRIVKKFLKTGNFNGIIPYDEYGNNLSPLIL--LEPRIIFSSKEEKKENNRSRSAILR 294

Query: 313 AGMRTV 318
              + +
Sbjct: 295 IAEKKI 300


>gi|313886065|ref|ZP_07819803.1| S-adenosyl-methyltransferase MraW [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312924595|gb|EFR35366.1| S-adenosyl-methyltransferase MraW [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 310

 Score =  151 bits (382), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 116/322 (36%), Positives = 169/322 (52%), Gaps = 30/322 (9%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65
           MS+ ++HT      VL E  + LL   P  + +D T G GG+SR+  +        I LD
Sbjct: 1   MSAKLYHTA-----VLCEDSLDLLVTTPTGLYVDVTMGGGGHSRALLERLAPEGRCIGLD 55

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQAT----FSQLQDYVPDKG-VDGVVFDLGVSSMQIDC 120
           +DP AV       R +      F AT      Q  DY    G VDG++ DLGVSS   D 
Sbjct: 56  QDPDAVVNAPTDSRYH------FVATNFRYLGQWLDYWGLTGQVDGILADLGVSSHHFDS 109

Query: 121 GDRGFSFQKSGPL-DMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178
            +RGFSF+    + DMRM S SG++A D++   + + L  IL   GE   A RIA  +V 
Sbjct: 110 EERGFSFRYEEAMPDMRMNSRSGVTARDILLSYSEEQLADILYYYGELHDARRIAALLVS 169

Query: 179 RRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
            R +  + T   L  ++   +        +  +R FQALRI VN+E+  L Q L  + + 
Sbjct: 170 HR-AVGYPTIAALMEVLTPVLPKGGPQLRNKLSRIFQALRIEVNDELGALRQLLSDSVRL 228

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFA----SRSGKVMAVRHMIPSNAHPAVFQSITKKVVV 294
           LK GG + ++S+HSLEDR+VK+FF      +  + +A    +P +A PA  + +TKK + 
Sbjct: 229 LKPGGRIAIISYHSLEDRMVKEFFRLGCFEQPSEALA---GMPLSA-PAPLRVVTKKAIT 284

Query: 295 PTQEDVAFNRRSRSAKLRAGMR 316
           P+ +++A N R+RSAKLR   R
Sbjct: 285 PSADEIADNNRARSAKLRVAER 306


>gi|150026102|ref|YP_001296928.1| S-adenosyl-methyltransferase MraW [Flavobacterium psychrophilum
           JIP02/86]
 gi|263447480|sp|A6H1A2|RSMH_FLAPJ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|149772643|emb|CAL44126.1| S-adenosyl-methyltransferase MraW [Flavobacterium psychrophilum
           JIP02/86]
          Length = 291

 Score =  151 bits (382), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 104/302 (34%), Positives = 165/302 (54%), Gaps = 29/302 (9%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMG--SNVIALDRDPFAVSCGQETMRD 80
           +L++ +  LN  P  V +D TFG GG+S+    ++G    +   D+D       +  + D
Sbjct: 1   MLKETVDGLNIKPDGVYVDVTFGGGGHSKEILSRLGPEGKLFGFDQDE---DAWENALPD 57

Query: 81  YKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
             E+F+L Q  F  ++ ++   G   VDG++ DLGVSS Q D  +RGFS +    LDMRM
Sbjct: 58  --ERFTLIQENFRYIKRFLRFNGIKKVDGILADLGVSSHQFDVPERGFSTRFDAELDMRM 115

Query: 138 SC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
           S  + ++A ++VN+ +  +L RI    GE   A  IA AI++ R+      T+DL  ++ 
Sbjct: 116 SKKNDLTAFNIVNEYDETNLRRIFAEYGELGNALAIARAIIEAREKEKIVNTEDLKQVLA 175

Query: 197 KTVYFSKNNRIHPA-TRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           +   F  NN+ H    + +Q++RI VN E++ L + L  + + L  GG L V+S+HSLED
Sbjct: 176 R---FLPNNKAHKILAQIYQSIRIEVNQEMDVLKEFLEQSLEVLDQGGRLSVISYHSLED 232

Query: 256 RLVKKF-----FASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           RLVK+F     F     K    R  +P       F+ I  K+++P+ +++  N R+RSAK
Sbjct: 233 RLVKRFMKNGLFEGEPEKDFFGRFEVP-------FKLIG-KMIIPSNQEIKINNRARSAK 284

Query: 311 LR 312
           LR
Sbjct: 285 LR 286


>gi|171920499|ref|ZP_02931791.1| S-adenosyl-methyltransferase MraW [Ureaplasma parvum serovar 1 str.
           ATCC 27813]
 gi|171902972|gb|EDT49261.1| S-adenosyl-methyltransferase MraW [Ureaplasma parvum serovar 1 str.
           ATCC 27813]
          Length = 308

 Score =  151 bits (381), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 107/309 (34%), Positives = 161/309 (52%), Gaps = 18/309 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI---ALDRDPFAVSCGQE 76
           H+ VLL + I LLN  P  + +D TFG GG+S+   K  S       LD+D  A++    
Sbjct: 6   HITVLLNETIELLNIKPDGIYVDCTFGRGGHSQLILKKLSKKGKLICLDQDQEAINFANN 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             ++      + +  F  L+  +       VDG +FDLG+SS Q+D   RGFS+ K+  L
Sbjct: 66  LFKN-NTNVIVIKTNFKNLKSALGAHKIFYVDGFIFDLGLSSPQLDDPKRGFSYHKNAWL 124

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  S  ++A  +VN  +   L  I    GE K    IA AIVK R      TT +L 
Sbjct: 125 DMRMDQSQNLNAHYIVNNYSFAKLVSIFKRYGEIKYPKIIADAIVKERSIKEINTTLELV 184

Query: 193 SLIQKTVYFSKNNRI----HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +I+K   +S   ++    HPA   FQA+RI VN+E+  L +    A   L   G++ ++
Sbjct: 185 EIIKK---YSPKKKLFEKKHPARLFFQAIRIEVNDELNILEKAFNDAISMLNPLGVVAII 241

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLED++VKK F + +   + +   +P N +   +  + +K++  TQE +  N RSRS
Sbjct: 242 SFHSLEDKIVKKVFNNYAK--IKLPKEVPINNYVNKYSLLNQKIMPSTQE-LNDNNRSRS 298

Query: 309 AKLRAGMRT 317
           + LR  +R 
Sbjct: 299 SILRGLIRN 307


>gi|163787483|ref|ZP_02181930.1| S-adenosyl-methyltransferase MraW [Flavobacteriales bacterium
           ALC-1]
 gi|159877371|gb|EDP71428.1| S-adenosyl-methyltransferase MraW [Flavobacteriales bacterium
           ALC-1]
          Length = 298

 Score =  151 bits (381), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 107/300 (35%), Positives = 163/300 (54%), Gaps = 17/300 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL + +  L+  P  V +D TFG GG+SR    ++G N  + A D+D  A++    
Sbjct: 4   HNAVLLIETVDGLDIKPNGVYVDVTFGGGGHSREILSRLGPNGKLYAFDQDKDALAN--- 60

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           T+ D  E+F L    F  ++ ++   GV   DGV+ D GVSS Q D  +RGFS +    L
Sbjct: 61  TIDD--ERFVLINENFRYIKRFLRFYGVKEVDGVLADFGVSSHQFDVAERGFSTRFEADL 118

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  S ISA  VVN  + + +  +L   GE +Q+  +A  IV  R     +T++ L 
Sbjct: 119 DMRMNQDSKISAYQVVNNYSEEQIKNVLLQYGELRQSPAMARVIVTERAREEIKTSEQLK 178

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +++  +   K N++    + +QA+RI VN EIE L + L    + LK GG L  +S+HS
Sbjct: 179 KVLKPFLNHKKENKV--LAQIYQAIRIEVNQEIEVLKELLLQTPEILKEGGRLSFISYHS 236

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDRLVK+F  +   +    R M  +   P        K+++P++ ++  N R+RSAKLR
Sbjct: 237 LEDRLVKRFIRNGLFEGEPERDMFGNFEVPL---RKVGKLIIPSRLEIKINNRARSAKLR 293


>gi|224419084|ref|ZP_03657090.1| S-adenosyl-methyltransferase MraW [Helicobacter canadensis MIT
           98-5491]
 gi|253828022|ref|ZP_04870907.1| S-adenosyl-methyltransferase [Helicobacter canadensis MIT 98-5491]
 gi|313142594|ref|ZP_07804787.1| S-adenosyl-methyltransferase MraW [Helicobacter canadensis MIT
           98-5491]
 gi|253511428|gb|EES90087.1| S-adenosyl-methyltransferase [Helicobacter canadensis MIT 98-5491]
 gi|313131625|gb|EFR49242.1| S-adenosyl-methyltransferase MraW [Helicobacter canadensis MIT
           98-5491]
          Length = 311

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 102/308 (33%), Positives = 169/308 (54%), Gaps = 20/308 (6%)

Query: 20  HVPVLLEKVIALLNPA----PGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSC 73
           H+ VL ++V+   N       G +++D T G GG+S +  +      VI +D+D  A++ 
Sbjct: 5   HISVLKQEVLEAFNTEIINQKGGILIDCTLGFGGHSLALLEKYPKLKVIGIDQDDEAIAL 64

Query: 74  GQETMRDYKEQFSLFQATFSQL--QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            ++ +  + ++FS+    FS +  Q    +  + G++ D+GVSSMQ D  +RGF F  S 
Sbjct: 65  AKKRLEPFCDRFSIEYGCFSGVLKQILQRENNIVGILADIGVSSMQFDSKERGFCFD-SE 123

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM  S   +A D+VN   + +L RI    GE ++  ++A+ IV+ R+     + + 
Sbjct: 124 FLDMRMDQSQNFTAKDIVNSYPLTELERIFRDFGEIREYKKLAYCIVELRKKEKITSAKM 183

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE-KALKAGGLLIVVS 249
           LS  I K     K+ +IHPAT +FQALRI VNNE+ EL   L+  + + ++    L ++S
Sbjct: 184 LSQFIAKHF---KHPKIHPATLAFQALRIEVNNELGELESMLKIFDSQTMQDCSRLCLIS 240

Query: 250 FHSLEDRLVKKFFASRSGKVM----AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           FHSLEDR++K  F       +    A++     N      +S+ KK ++P +E++  N R
Sbjct: 241 FHSLEDRIIKNKFKQWENPCICPPQALKCECGRNHQKG--RSLYKKPIIPKEEEIKDNPR 298

Query: 306 SRSAKLRA 313
           +RS+K+R 
Sbjct: 299 ARSSKMRV 306


>gi|260438648|ref|ZP_05792464.1| S-adenosyl-methyltransferase MraW [Butyrivibrio crossotus DSM 2876]
 gi|292809242|gb|EFF68447.1| S-adenosyl-methyltransferase MraW [Butyrivibrio crossotus DSM 2876]
          Length = 346

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 106/313 (33%), Positives = 165/313 (52%), Gaps = 29/313 (9%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPFAVSCG 74
           G H+P+++E+++ +L   PG V LDAT G GG+S       K   ++ +LD DP  +   
Sbjct: 49  GMHIPIMVEEILDVLKVQPGDVGLDATLGYGGHSGKILEKLKGSGHLYSLDIDPIEIVRT 108

Query: 75  QETMRDY---KEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           ++ +RD    ++ F++ +  F  + +     G  D ++ DLGVSSMQID  +RGFS++  
Sbjct: 109 EKRLRDKGFSEDVFTVIRTNFKNIDEVSGTAGKFDFLMADLGVSSMQIDNPERGFSYKNE 168

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTT 188
           GPLD+R+  S G  AS+ + +    + T +L    +E  A  IA  +    R+     TT
Sbjct: 169 GPLDLRLDPSKGEPASERLKKLTKDEFTGMLIENSDEPYAKEIATEVFNEFRKKKEINTT 228

Query: 189 QDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
            DL   I+K + F      K+     + R+FQALRI VN+E E L + L+     +K GG
Sbjct: 229 TDLYKAIEKALSFIPEKERKDAVKKSSQRTFQALRIDVNSEFEVLEEFLQKLPDVMKEGG 288

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            + +++FHS EDRLVK++F       M  R          V   I+  V+ P+  + A N
Sbjct: 289 RIAILTFHSGEDRLVKQYFK------MYKRD--------GVLSEIS-DVIRPSAAECARN 333

Query: 304 RRSRSAKLRAGMR 316
            R+RS KLR  +R
Sbjct: 334 GRARSTKLRWAVR 346


>gi|327540391|gb|EGF26977.1| S-adenosyl-methyltransferase MraW [Rhodopirellula baltica WH47]
          Length = 325

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 105/314 (33%), Positives = 163/314 (51%), Gaps = 33/314 (10%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---------VIALDRDPF 69
           +HV V+  +++  +       I+D T+G GG++R   ++ ++         VIA+DRDP 
Sbjct: 27  EHVSVMPNEIVQWVREINPTTIIDGTYGGGGHTRLLAEVLADAGADSDTPRVIAIDRDPA 86

Query: 70  AVSCG-QETMRDYKEQFSLFQATFS---QLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125
            V    Q++      +  LF  ++    +  D +     D +V DLG+SS Q+   +RGF
Sbjct: 87  VVRRDEQKSWIKDDPRIELFLGSYESSPKALDALDLTHADALVLDLGLSSDQLADRNRGF 146

Query: 126 SFQ-KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQS 182
           +F      LD+R    +G+ A   + Q + K++   +   GEE+ + RIA  I  R R+ 
Sbjct: 147 TFTIDDAELDLRFDPENGVPAYRWLQQHSEKEIADAIYQFGEERFSRRIAKQIFLRARER 206

Query: 183 APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
            P     +L  + ++ V  S+N+ IHPATR+FQALRI VN+E+  L + L+SA   +  G
Sbjct: 207 NPVTKVGELVEICRRCVPRSRNHDIHPATRTFQALRIAVNDELGGLTRTLQSAPDWIAPG 266

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G + V+SFHSLEDR+VK  F                      ++ +TKK + PT E+V  
Sbjct: 267 GRVAVISFHSLEDRIVKNAFREDHR-----------------WEILTKKPLRPTDEEVQA 309

Query: 303 NRRSRSAKLRAGMR 316
           N RSRSAKLR   R
Sbjct: 310 NPRSRSAKLRVAKR 323


>gi|188994484|ref|YP_001928736.1| S-adenosyl-methyltransferase MraW [Porphyromonas gingivalis ATCC
           33277]
 gi|262824880|sp|B2RIE4|RSMH_PORG3 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|188594164|dbj|BAG33139.1| putative S-adenosyl-methyltransferase MraW [Porphyromonas
           gingivalis ATCC 33277]
          Length = 311

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 107/303 (35%), Positives = 165/303 (54%), Gaps = 17/303 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+PV+L + +  L   P    +D TFG GG+SR+  +  S+   +   D+D  A +C + 
Sbjct: 11  HIPVMLGECLEGLRIDPDGCYVDVTFGGGGHSRAIVEKLSSKGRLYGFDQD--ADAC-RN 67

Query: 77  TMRDYKEQFSLFQATFSQL---QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++D  E+F+   + F  L    DY  + GVDG++ DLGVSS   D  +RGFSF+   PL
Sbjct: 68  VLQD--ERFTFVPSNFRYLANFMDYYGEDGVDGILADLGVSSHHFDEEERGFSFRSESPL 125

Query: 134 -DMRMSCSGISASD-VVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS--APFQTTQ 189
            DMRM+      +  ++N+ +   L+ +    GE KQA R+A +IV  R+S     QT  
Sbjct: 126 LDMRMNARAGRNAAAILNEYDASSLSALFYHYGELKQARRLAASIVHYRESLSGGLQTVG 185

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            L   ++  +  S           FQALRI VN+E+  L Q L +A   L++GG L+V++
Sbjct: 186 QLLEAVRGLI--SPREEKKQLACIFQALRIEVNDELGALQQMLEAALGCLRSGGRLVVMT 243

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           +HSLEDR+VK F    + K      +    A  + +Q IT+K +  + ++++ N RSRSA
Sbjct: 244 YHSLEDRMVKNFLRYGTVKAPDEDSLRLYGAPQSPWQQITRKPLTASTKELSDNPRSRSA 303

Query: 310 KLR 312
           KLR
Sbjct: 304 KLR 306


>gi|237750751|ref|ZP_04581231.1| S-adenosyl-methyltransferase MraW [Helicobacter bilis ATCC 43879]
 gi|229373841|gb|EEO24232.1| S-adenosyl-methyltransferase MraW [Helicobacter bilis ATCC 43879]
          Length = 374

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 109/322 (33%), Positives = 167/322 (51%), Gaps = 36/322 (11%)

Query: 20  HVPVLLEKVIALLNP----------------APGKVILDATFGAGGYSRSFCKMGSN--V 61
           H+PVLLE ++   +                    +V++D T G GG SR+  +  SN  +
Sbjct: 57  HIPVLLEHMLDTFDRIFLSTHSHYIAKKSLIKNKEVLIDCTLGFGGMSRALLERYSNLHI 116

Query: 62  IALDRDPFAVSCGQETMRDYKEQFSLFQATFS----QLQDYVPDKG--VDGVVFDLGVSS 115
           I +DRD +A+   +E+M  +K++F      F+    Q+   +   G  + G++ D+GVSS
Sbjct: 117 IGIDRDSYALEYNRESMAKFKDRFQTRHGDFATLLPQIIKEIEANGDHLCGILADIGVSS 176

Query: 116 MQIDCGDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAH 174
            Q+D  DRGFSF  S  LDMRM     + A  +VN  N  +L  I    GE ++  ++ +
Sbjct: 177 YQLDSIDRGFSFH-SNKLDMRMDRTQSLDADMIVNTYNKYELEEIFKNYGEIREYKKLVN 235

Query: 175 AIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234
            IV+ RQ    + T D  SL    +      +IHPAT  +QALRI VN+E+ +L   L S
Sbjct: 236 LIVQERQRG--RITAD--SLQNIALKLHSKAKIHPATLIYQALRIAVNDELGQLKSLLHS 291

Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVR---HMIPSNAHPAVFQSITKK 291
            +   +   L  V+SFHSLEDR++K+ F   +   +        +  N H   F S+ KK
Sbjct: 292 CQNLHEV--LFCVISFHSLEDRMIKESFKQFAKSCICDTTSFKCVCGNNHAKGF-SLYKK 348

Query: 292 VVVPTQEDVAFNRRSRSAKLRA 313
            ++   +++A N+RSRSAKLRA
Sbjct: 349 PLIADSKEIAQNKRSRSAKLRA 370


>gi|332299370|ref|YP_004441291.1| Ribosomal RNA small subunit methyltransferase H [Porphyromonas
           asaccharolytica DSM 20707]
 gi|332176433|gb|AEE12123.1| Ribosomal RNA small subunit methyltransferase H [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 338

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 115/323 (35%), Positives = 170/323 (52%), Gaps = 30/323 (9%)

Query: 8   TMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIAL 64
           ++S+ ++HT      VL E  + LL   P  + +D T G GG+SR+  +        I L
Sbjct: 28  SLSAKLYHTA-----VLCEDSLDLLVTTPTGLYVDVTMGGGGHSRALLERLAPEGRCIGL 82

Query: 65  DRDPFAVSCGQETMRDYKEQFSLFQAT----FSQLQDYVPDKG-VDGVVFDLGVSSMQID 119
           D+DP AV       R +      F AT      Q  DY    G VDG++ DLGVSS   D
Sbjct: 83  DQDPDAVVNAPTDSRYH------FVATNFRYLGQWLDYWGLTGQVDGILADLGVSSHHFD 136

Query: 120 CGDRGFSFQKSGPL-DMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177
             +RGFSF+    + DMRM S SG++A D++   + + L  IL   GE   A RIA  +V
Sbjct: 137 SEERGFSFRYEEAMPDMRMNSRSGVTARDILLSYSEEQLADILYYYGELHDARRIAALLV 196

Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
             R +  + T   L  ++   +        +  +R FQALRI VN+E+  L Q L  + +
Sbjct: 197 SHR-AVGYPTIAALMEVLTPVLPKGGPQLRNKLSRIFQALRIEVNDELGALRQLLSDSVR 255

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFA----SRSGKVMAVRHMIPSNAHPAVFQSITKKVV 293
            LK GG + ++S+HSLEDR+VK+FF      +  + +A    +P +A PA  + +TKK +
Sbjct: 256 LLKPGGRIAIISYHSLEDRMVKEFFRLGCFEQPSEALA---GMPLSA-PAPLRVVTKKAI 311

Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316
            P+ +++A N R+RSAKLR   R
Sbjct: 312 TPSADEIADNNRARSAKLRVAER 334


>gi|196231370|ref|ZP_03130229.1| S-adenosyl-methyltransferase MraW [Chthoniobacter flavus Ellin428]
 gi|196224706|gb|EDY19217.1| S-adenosyl-methyltransferase MraW [Chthoniobacter flavus Ellin428]
          Length = 351

 Score =  150 bits (379), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 103/316 (32%), Positives = 162/316 (51%), Gaps = 30/316 (9%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCG 74
           G H P+++ +++ +L P PG+  +DAT G GG+SR   +    G  +I LD DP  +   
Sbjct: 51  GMHRPIMVSEIMEILAPKPGEFAVDATLGYGGHSREILQRITPGGRLIGLDVDPLELPKT 110

Query: 75  QETMRDY---KEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
           +  +R      + F+  +  ++ L   +     +G D ++ DLG+SSMQID   RGF+F+
Sbjct: 111 EARLRALGFGPDVFTAQRVNYAGLPALIAREAPEGADIILADLGLSSMQIDNPSRGFTFK 170

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
             GPLD+RM+   G  AS ++   N   L ++L    +E  A+ +  AI+  +   P  T
Sbjct: 171 VEGPLDLRMNPERGQPASALLATINAAKLEQLLTENADEPNAALLTRAILDAQARTPITT 230

Query: 188 TQDLSSLIQKTVYFSKNNRIHPAT---RSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           T  L+++I+  +  +   RI P     R FQALRI VN+E   L   LR   + L+ GG 
Sbjct: 231 TTALATVIRTAL--ASLPRIEPNDTIRRVFQALRIAVNDEFSALDTFLRHLPQCLRPGGR 288

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           + +++FHS EDR VK              H   +     ++  I + V+ P  E++  N 
Sbjct: 289 IAILTFHSGEDRRVK--------------HAFKTGLQEGLYSEIARDVLRPGAEELRANP 334

Query: 305 RSRSAKLRAGM-RTVE 319
           RS SAKLR  + R VE
Sbjct: 335 RSASAKLRWAVGRKVE 350


>gi|260063719|ref|YP_003196799.1| S-adenosyl-methyltransferase MraW [Robiginitalea biformata
           HTCC2501]
 gi|88783164|gb|EAR14337.1| S-adenosyl-methyltransferase MraW [Robiginitalea biformata
           HTCC2501]
          Length = 312

 Score =  150 bits (378), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 110/305 (36%), Positives = 160/305 (52%), Gaps = 17/305 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMG--SNVIALDRDPFAVSCGQE 76
           H PVLL + +  L        +D TFG GG+SR    ++G    +IA D+D  A++   E
Sbjct: 7   HKPVLLRESVDGLAIREDGTYVDVTFGGGGHSREILGRLGPKGRLIAFDQDEEALANKPE 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                 E+F L    F  ++ ++   G   VDG++ D GVSS Q D  +RGFS +    L
Sbjct: 67  -----DERFLLIGENFRYIRQFLKFYGILKVDGILADFGVSSHQFDRAERGFSTRFDAGL 121

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRMS    I+A DVVN  + + L  +L   GE + A +IA  +V+ R  A  QTT  L+
Sbjct: 122 DMRMSRRAEITARDVVNTYSFEKLRSVLQRYGELRSAGKIAGELVRARDKASIQTTYGLN 181

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
             +   +   K N++    R +QA+R+ VN E+  L   L+     L  GG L ++S+HS
Sbjct: 182 EAVSAFLPRGKENKV--LARIYQAIRMEVNQELAALEAFLQQTAALLPTGGRLSLISYHS 239

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDRLVK+F   R+GK              A F+ +  K++VP  +++  N R+RSAKLR
Sbjct: 240 LEDRLVKRFI--RTGKFEGEVDKDFYGNPLAPFRKVG-KLIVPGDDELEENPRARSAKLR 296

Query: 313 AGMRT 317
              RT
Sbjct: 297 IAERT 301


>gi|325989697|ref|YP_004249396.1| S-adenosyl-L-methionine-dependent methyltransferas [Mycoplasma suis
           KI3806]
 gi|323574782|emb|CBZ40442.1| S-adenosyl-L-methionine-dependent methyltransferas [Mycoplasma
           suis]
          Length = 304

 Score =  150 bits (378), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 89/309 (28%), Positives = 156/309 (50%), Gaps = 15/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76
           H+PV+L +V      +   + +D TFG GG+S+   + +G N  +I +D DP  +    E
Sbjct: 2   HIPVMLREVCENWLSSANGIYIDCTFGCGGHSKELLRSLGENSRLIGMDVDPKVIPYANE 61

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG-P 132
            +     +FS     ++ +++Y     +   DG++FDLG+S++Q+   +R FS+  S   
Sbjct: 62  -LSSQDSRFSFLNVNYTSMRNYWKTNSLPPADGILFDLGLSTLQLKDEERTFSYNSSSST 120

Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           L++R    G S  +++N    K L  I    G   +A R+   I++ R++ P    + L 
Sbjct: 121 LELRFGLEGKSVYEILNNYPPKKLNWIFKKYGNISEAERLTQTIIQFRKNTPITEVKQLK 180

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I+++   +K    +P    FQ+LRI  NNE+    + LR A + LK  G L++++FHS
Sbjct: 181 EIIERSKILNKRKNKNPMKLIFQSLRIECNNELNCFKEALRQAAELLKVNGKLLIITFHS 240

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAH--PAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           LED +V ++    S  +      IP      P  F   +   ++P++ ++  N  SRSAK
Sbjct: 241 LEDEIVLEWKRQNSSYI-----KIPEMGEIIPPRFTLKSNSPLLPSRAEIETNWASRSAK 295

Query: 311 LRAGMRTVE 319
           L    +T E
Sbjct: 296 LWVFTKTRE 304


>gi|219128094|ref|XP_002184257.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217404488|gb|EEC44435.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 290

 Score =  150 bits (378), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 109/298 (36%), Positives = 152/298 (51%), Gaps = 36/298 (12%)

Query: 39  VILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE-TMRDYKEQFSLFQATFSQ 94
           + +D T G GG+S +  +    G  V   D DP A++   E T  D      L       
Sbjct: 1   LFIDGTLGGGGHSAALLQRLQPGDVVFGCDVDPAALATASERTGNDATTNLVLPPTC--- 57

Query: 95  LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC----SGISASDVVNQ 150
                   GVDG++ DLGVSS QID  +RGF+F K GPLDMRM      +G++A+D+ N+
Sbjct: 58  -------PGVDGILLDLGVSSHQIDTAERGFAFMKDGPLDMRMGQQNLHTGLTAADICNE 110

Query: 151 ANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV-YFSKN----N 205
            +  +L RIL   G+E +A  IAH+IV   QS P QTT DL   +   V  F++      
Sbjct: 111 FDEVELRRILKTYGDEPRAKSIAHSIV---QSRPLQTTNDLVEAVSAVVPQFARKGKRLG 167

Query: 206 RIHPATRSFQALRIFVNNEIEELAQGLRS-AEKALKAGGLLIVVSFHSLEDRLVKKFFAS 264
           R+    R FQ+LRI VN E + L Q L   A   L+ GG L+V+S+ S+EDR  K+    
Sbjct: 168 RMSTLARVFQSLRIVVNQEDKVLEQALVDMAPTLLRPGGRLVVLSYQSMEDRSTKRVM-- 225

Query: 265 RSGKVMAVRHMIPSNAH------PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           R G      H    + +      P  F ++ K+    T+E++A N R+RSA LR   R
Sbjct: 226 RDGMTRKKTHSDEKDMYGNYCGAPRPFLALGKRQKA-TEEEIAGNPRARSATLRVAER 282


>gi|291519055|emb|CBK74276.1| S-adenosyl-methyltransferase MraW [Butyrivibrio fibrisolvens 16/4]
          Length = 289

 Score =  150 bits (378), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 87/254 (34%), Positives = 142/254 (55%), Gaps = 12/254 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQE 76
           +H  VLL + +  LN  P  + +D T G GG+S          ++   D+D  A+    E
Sbjct: 4   NHYSVLLYETVDNLNIKPDGIYVDGTLGGGGHSFEIASRLTTGHLYGFDQDTDALKAAGE 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQ-KSGP 132
            +  Y ++ +   + +  +++ + + GV   DG++ DLGVSS Q+D  DRGF+++    P
Sbjct: 64  RLACYGDKVTRIHSNYEFMKERLAELGVTKVDGIMLDLGVSSFQLDEADRGFTYRVDDAP 123

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM     ++A+D+VN  + +DLTR+L   GEEK + +I   I+K R+ AP  T   L
Sbjct: 124 LDMRMDKDNPMTAADIVNTYSAEDLTRVLFTYGEEKFSKQIVKNIIKEREKAPILTAGQL 183

Query: 192 SSLIQKTVYFSKNNRI---HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           + +I +++   K  ++   HP+ R++QALRI +N E+  L   +      L  GG L ++
Sbjct: 184 NKIIAESI--PKKAQVGQGHPSKRTYQALRIELNRELTVLEDHIDDMIDLLNPGGRLCII 241

Query: 249 SFHSLEDRLVKKFF 262
           +FHSLEDR+ K  F
Sbjct: 242 TFHSLEDRITKVAF 255


>gi|193216628|ref|YP_001999870.1| S-adenosyl-methyltransferase [Mycoplasma arthritidis 158L3-1]
 gi|263456519|sp|B3PMB4|RSMH_MYCA5 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|193001951|gb|ACF07166.1| S-adenosyl-methyltransferase [Mycoplasma arthritidis 158L3-1]
          Length = 286

 Score =  150 bits (378), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 100/280 (35%), Positives = 154/280 (55%), Gaps = 18/280 (6%)

Query: 41  LDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDY 98
           +D T G  G+S    K  +   +I  D+D  A+    + ++     F+L Q  F  L+  
Sbjct: 10  VDLTLGRAGHSLEILKKLINGRLICFDKDNEAIKESYKKLQKISPNFTLIQNDFRFLKAE 69

Query: 99  VPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVK 154
           +   G   VDG++ DLGVSS QID   RGFS+ + GPLDMRM+  +  SA D+++  +  
Sbjct: 70  LEKLGINEVDGILADLGVSSPQIDDPTRGFSYSQEGPLDMRMNQQNSFSAKDIIDNFDES 129

Query: 155 DLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSF 214
           +LT+IL    + K A+ +A AIV +R   P ++T +L  +I+  +        +PA   F
Sbjct: 130 ELTKILIKNADVKLANLVAKAIVAKR---PIKSTSELVEIIKNALPAKIVREKNPAKAVF 186

Query: 215 QALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH 274
           QALRI VN+E+  L   L  A + LK  G +++++FHS ED +VK FF  ++       +
Sbjct: 187 QALRIEVNDELGALTAMLADATQLLKKDGKILIITFHSKEDSIVKNFFQKQN-------Y 239

Query: 275 MIPS-NAHPAVFQSITK-KVVVPTQEDVAFNRRSRSAKLR 312
           + P  N  P   Q I K K++ P++++   N RSRSAKLR
Sbjct: 240 VDPRLNKLPINIQKIWKQKIIFPSEDEKLQNNRSRSAKLR 279


>gi|260587648|ref|ZP_05853561.1| S-adenosyl-methyltransferase MraW [Blautia hansenii DSM 20583]
 gi|260541913|gb|EEX22482.1| S-adenosyl-methyltransferase MraW [Blautia hansenii DSM 20583]
          Length = 349

 Score =  150 bits (378), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 107/315 (33%), Positives = 164/315 (52%), Gaps = 32/315 (10%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF--CKMGS-NVIALDRDPFAVSCG 74
           G H+ + +++++  L   PG++ LDAT G GG+S     C  G  ++ ALD DP  +   
Sbjct: 50  GMHISICVQEILDFLQIQPGQIGLDATLGYGGHSSKMLGCLEGKGHLYALDVDPIEIKKT 109

Query: 75  QETMR--DYKEQ-FSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           +E +   DYKE   ++ Q  F+ +     + G  D V+ DLGVSSMQID  +RGF+++  
Sbjct: 110 KERLEKMDYKEDILTIKQMNFADVDQLKEEAGGFDFVLADLGVSSMQIDNPERGFTYKFE 169

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTT 188
           GPLD+R++   GISA++ +   +  +L  +L    +E  A  I++ I+   R+  P  TT
Sbjct: 170 GPLDLRLNPEKGISAAERLKDISQPELEGMLIENSDEPYAKEISNTIISEIRRGNPITTT 229

Query: 189 QDLSSLIQKT-VYFSKNNRIH----PATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
             L   ++K  V   +  R         R+FQALRI VN+E E L   +      L  G 
Sbjct: 230 TQLQKAVEKALVRIPEKERKEMVKKSCARTFQALRIDVNSEFEVLEAFMEKLPTVLNKGA 289

Query: 244 LLIVVSFHSLEDRLVKKFFAS--RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
            + +++FHS EDRLVKK F    R G                V+  I+K V+ P+ E+ A
Sbjct: 290 RVAILTFHSGEDRLVKKAFQRFYREG----------------VYSEISKDVIRPSAEECA 333

Query: 302 FNRRSRSAKLRAGMR 316
            N RSRS K+R  ++
Sbjct: 334 RNSRSRSTKMRWAIK 348


>gi|238916664|ref|YP_002930181.1| S-adenosyl-methyltransferase [Eubacterium eligens ATCC 27750]
 gi|263447037|sp|C4Z530|RSMH_EUBE2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|238872024|gb|ACR71734.1| S-adenosyl-methyltransferase [Eubacterium eligens ATCC 27750]
          Length = 315

 Score =  149 bits (377), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 97/303 (32%), Positives = 165/303 (54%), Gaps = 9/303 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VLLE+ I  LN  P  + +D T G  G+S    K    G  +I +D+D  A++   E
Sbjct: 9   HKSVLLEETIDNLNIKPDGIYVDGTLGGAGHSYQIAKRLTGGGRLIGIDQDADAIAAATE 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +++++E+ ++ +  +  +   + + G   VDG++ D+GVSS Q+D   RGF++     L
Sbjct: 69  RLKEFEERVTIVRNNYCNMDKVLDELGIDKVDGILLDIGVSSYQLDTASRGFTYNVDTAL 128

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     ++A D+VN  +  +L RI+   GE++ A  IA  IV  R+  P +TT +L+
Sbjct: 129 DMRMDQRQEMTAKDLVNTYSEMELFRIIRDYGEDRFAKNIAKHIVAARKEKPIETTFELN 188

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+ ++    +    HP+ R++QA+RI +N E++ L   +      L   G L +++FH
Sbjct: 189 EIIKASIPAKVRATGGHPSKRTYQAIRIELNRELDVLENSIDMMIDRLNPQGRLCIITFH 248

Query: 252 SLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK  F +            +      +  + IT+K +VP  E++  N+RS+S+K
Sbjct: 249 SLEDRIVKARFRNNENPCTCPPDFPVCVCGKKSKGKVITRKPIVPGDEELNENQRSKSSK 308

Query: 311 LRA 313
           LR 
Sbjct: 309 LRV 311


>gi|297807119|ref|XP_002871443.1| mraW methylase family protein [Arabidopsis lyrata subsp. lyrata]
 gi|297317280|gb|EFH47702.1| mraW methylase family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 434

 Score =  149 bits (377), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 110/335 (32%), Positives = 164/335 (48%), Gaps = 42/335 (12%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCGQ- 75
           HVPV+L +V+ + +    +  +D T GA G+S S  +  S +   + +D DP A   G  
Sbjct: 95  HVPVMLGEVLDIFSSVRLRSFVDCTLGAAGHSSSIIQSHSELKHFVGMDVDPVARKLGHF 154

Query: 76  -------ETMRD--YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126
                   T++     + F   ++  +  Q  + D GVDG++ DLG+SSMQ++   RGFS
Sbjct: 155 HIDSLMHPTLKASIVLKNFKYIKSVVADTQPELLDVGVDGILMDLGMSSMQVNNPQRGFS 214

Query: 127 FQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
             + GPLDMRM     ++A D+VN     +L R+L   GEE     +   IVK R +   
Sbjct: 215 VLQEGPLDMRMDPQATLTAEDIVNSWPESELGRVLRDYGEESNWHLLQTRIVKARLNGGL 274

Query: 186 QTTQDLSSLIQKTVYFSKNNR---IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
            +T +L  LI+      +  R   I  ATR FQ LRI VN+E++ L   L S+   L  G
Sbjct: 275 HSTGELVDLIRGMSPAGRGGRQGWIKTATRVFQGLRIAVNDELKTLQNSLYSSFDVLGPG 334

Query: 243 GLLIVVSFHSLEDRLVKKFF----------ASRSGKVMAVRHMIPSNAHPAVFQS----- 287
           G L V+SFHSLEDR+VK+ F           +  G  +     I       + +      
Sbjct: 335 GRLAVISFHSLEDRVVKQTFLNILGFQREEINGEGNSVKPERQIEERVEKELKEKEAWIK 394

Query: 288 ----------ITKKVVVPTQEDVAFNRRSRSAKLR 312
                     +TK+ + P++E+   NRR+RSAKLR
Sbjct: 395 QTVIGSKGVILTKRPITPSEEEERLNRRARSAKLR 429


>gi|89891774|ref|ZP_01203276.1| S-adenosyl-methyltransferase, MraW family [Flavobacteria bacterium
           BBFL7]
 gi|89515929|gb|EAS18594.1| S-adenosyl-methyltransferase, MraW family [Flavobacteria bacterium
           BBFL7]
          Length = 304

 Score =  149 bits (376), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 112/309 (36%), Positives = 161/309 (52%), Gaps = 27/309 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H PVLLE+ I  L   P  V +D T+G GG+SR    ++G +  + A D+D  A+    E
Sbjct: 8   HSPVLLEESIDGLAINPSGVYVDVTYGGGGHSREILSRLGEDGKLFAFDQDLDALENVIE 67

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             R     F+L    F  ++ ++   GV   DG++ DLGVSS Q D  DRGFS +    L
Sbjct: 68  DPR-----FTLINQNFRFMKRFLRMYGVKEVDGILADLGVSSHQFDEADRGFSTRFDARL 122

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  S + A  VVN     DL RI    GE + A R+  AI+ +RQ    +T   L 
Sbjct: 123 DMRMNQESELDAVRVVNDYEEDDLNRIFKEYGELRIAPRLTRAIIAKRQEGLIETVAQLK 182

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +    V     +++    + FQA+RI VN E++ L + L  +++ LK GG L V+S+HS
Sbjct: 183 EICAPFVPERIQHKM--LAQVFQAIRIEVNQEMDVLEEFLIQSKEILKTGGRLSVISYHS 240

Query: 253 LEDRLVKKF-----FASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           LEDR VK+F     F     K +  R  +P       F+ +  K+++PT   +  N R+R
Sbjct: 241 LEDRPVKRFMRNGLFHGEPEKDVFGRASVP-------FKKVG-KLIIPTAAQIKENNRAR 292

Query: 308 SAKLRAGMR 316
           SAKLR   R
Sbjct: 293 SAKLRIAQR 301


>gi|167043610|gb|ABZ08304.1| putative MraW methylase family protein [uncultured marine
           microorganism HF4000_APKG2M17]
          Length = 314

 Score =  149 bits (376), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 103/305 (33%), Positives = 162/305 (53%), Gaps = 22/305 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H PVL   VI  L      + +D T G GG++ +          V+A+DRD  A+   +E
Sbjct: 8   HEPVLCNTVIQGLVSRTDGIYVDGTLGGGGHTAALLDALDSSGRVVAIDRDDDAI---RE 64

Query: 77  TMRDYKE-----QFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQ 128
           T +         + ++ +  F+ ++  + + G   V G + DLGVSS QID   RGFS +
Sbjct: 65  TSKRLSPDLASGRLTVLKGNFADVKLLLAEAGIAKVTGFLLDLGVSSHQIDEAGRGFSHR 124

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           K GPLDMRM  S G+ A+++VNQ +V++L R+L   GE+    R         ++ P   
Sbjct: 125 KDGPLDMRMDRSQGVDANELVNQLDVEELARLLRRFGEQP---RSGRIARAIIRARPLSG 181

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T+DLS LI+      +       +R FQA RI VN E++ L + L  +E  ++ G  L V
Sbjct: 182 TEDLSRLIRDLA--PRGQEAKTLSRVFQAFRIAVNEELDALDRVLLDSEAIMEVGARLAV 239

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +S+HSLEDR VK++  S + +    R +  +   P  ++ IT+K ++  + ++  N RSR
Sbjct: 240 ISYHSLEDRRVKRYMRSGNLEGEVQRDVFGNQITP--WRMITRKPIMADEAEIRDNPRSR 297

Query: 308 SAKLR 312
           SA+LR
Sbjct: 298 SARLR 302


>gi|325973262|ref|YP_004250326.1| s-adenosyl-methyltransferase MraW [Mycoplasma suis str. Illinois]
 gi|323651864|gb|ADX97946.1| s-adenosyl-methyltransferase MraW [Mycoplasma suis str. Illinois]
          Length = 304

 Score =  149 bits (376), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 88/309 (28%), Positives = 155/309 (50%), Gaps = 15/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQE 76
           H+PV+L +V      +   + +D TFG GG+S+ F K   + S +I +D DP  +   +E
Sbjct: 2   HIPVMLREVCENWLSSANGIYIDCTFGCGGHSKEFLKSLGVNSRLIGMDVDPKVIPYAEE 61

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG-P 132
            +     +FS     ++ +++Y     +   DG++FDLG+S++Q+   +R FS+  S   
Sbjct: 62  -LSSQDSRFSFLNVNYTSMRNYWKTNSLPPADGILFDLGLSTLQLKDEERTFSYNSSSST 120

Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           L++R    G S  +++N    K L  I    G   +A R+   I++ R++ P      L 
Sbjct: 121 LELRFGLEGKSVYEILNNYPPKKLNWIFKKYGNISEAERLTQTIIQFRKNTPITEVNQLK 180

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I+++   +K    +P    FQ+LRI  NNE+    + LR A + LK  G L++++F S
Sbjct: 181 EIIERSKILNKRKNKNPMKLIFQSLRIECNNELNCFKEALRQAAELLKVNGKLLIITFQS 240

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAH--PAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           LED +V ++    S  +      IP      P  F   +   ++P++ ++  N  SRSA+
Sbjct: 241 LEDEIVLEWKRQNSSYI-----KIPEMGEIIPPRFTLKSNSPLLPSRAEIETNWASRSAE 295

Query: 311 LRAGMRTVE 319
           L    +T E
Sbjct: 296 LWVFTKTRE 304


>gi|256080680|ref|XP_002576606.1| S-adenosyl-methyltransferase mraW [Schistosoma mansoni]
 gi|238661881|emb|CAZ32843.1| S-adenosyl-methyltransferase mraW, putative [Schistosoma mansoni]
          Length = 260

 Score =  149 bits (375), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 98/243 (40%), Positives = 128/243 (52%), Gaps = 48/243 (19%)

Query: 102 KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILG 161
           + VD ++ DLGVSS+Q+D   RGF F+ + PLDMRM+ S           NV        
Sbjct: 37  QSVDLILMDLGVSSLQLDIESRGFGFKHNAPLDMRMNQS----------PNVH------- 79

Query: 162 ILGEEKQASRIAHAIVKRRQS-APFQTTQDLSSLIQKTVYFSKNNR--IHPATRSFQALR 218
           I GEE+ + RIA+AIV  R      QTT+ L+ LI   V  ++  R  IHPATR FQALR
Sbjct: 80  IYGEERLSKRIANAIVDYRNDVGSIQTTKQLADLIHSVVPMNREGRSSIHPATRVFQALR 139

Query: 219 IFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPS 278
           IF+N+E+ EL  GL  AE  LK GG L+V+SFHSLEDRLVK  F S    +   +++   
Sbjct: 140 IFINDELNELCIGLELAEFLLKPGGYLVVLSFHSLEDRLVKWSFHSDYKHLTLSKYLSQR 199

Query: 279 NAHPAVFQSITKK-------------------------VVVPTQEDVAFNRRSRSAKLRA 313
           + H   FQ I K+                          + P+  ++  N RSRSAKLR 
Sbjct: 200 SRH---FQCINKRQEYEDDEISKESLGQIKSKWNCVIGPITPSDSEIDSNPRSRSAKLRI 256

Query: 314 GMR 316
             R
Sbjct: 257 AKR 259


>gi|149371570|ref|ZP_01890986.1| S-adenosyl-methyltransferase MraW [unidentified eubacterium SCB49]
 gi|149355197|gb|EDM43757.1| S-adenosyl-methyltransferase MraW [unidentified eubacterium SCB49]
          Length = 298

 Score =  149 bits (375), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 107/305 (35%), Positives = 157/305 (51%), Gaps = 27/305 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSN--VIALDRDPFAVSCGQE 76
           H PVLL   +  L   P  V +D TFG GG+SR   K +G N  +IA D+D  A+    +
Sbjct: 4   HNPVLLHPTVDGLAIKPDGVYVDVTFGGGGHSREILKRLGPNGKLIAFDQDKDALDNVID 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             R     F L    F  L+ ++     K VDG++ D GVSS Q D  +RGFS +    L
Sbjct: 64  DPR-----FVLVNENFRFLKRFLRFHGHKQVDGILADFGVSSHQFDVAERGFSTRFEAEL 118

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM   S  SA DVVN      L+ +L   GE + +  IA  I ++R++ P +T+  L 
Sbjct: 119 DMRMDQGSAFSAYDVVNNYEESQLSSVLFQYGELRASKGIARVICEKRKNGPIKTSDQLK 178

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
             + + +   + ++I    + +QA+RI VN E+E + + L+ + + L  GG L V+S+HS
Sbjct: 179 EAVARFLPKHREHKI--LAQIYQAIRIEVNQELEVIKEFLQQSIEVLPVGGRLSVISYHS 236

Query: 253 LEDRLVKKF-----FASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           LEDRLVK+F     F     K +  R  +P             K ++P   ++  N R+R
Sbjct: 237 LEDRLVKRFMRNGMFEGEPEKDVFGRAEVPMKP--------VGKFIIPDAAEIKENNRAR 288

Query: 308 SAKLR 312
           SAKLR
Sbjct: 289 SAKLR 293


>gi|327404192|ref|YP_004345030.1| Ribosomal RNA small subunit methyltransferase H [Fluviicola
           taffensis DSM 16823]
 gi|327319700|gb|AEA44192.1| Ribosomal RNA small subunit methyltransferase H [Fluviicola
           taffensis DSM 16823]
          Length = 308

 Score =  148 bits (374), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 105/305 (34%), Positives = 160/305 (52%), Gaps = 16/305 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMG--SNVIALDRDPFAVSCGQE 76
           HVPV+L++ +  L   P  + +D TFG GG+SR+ F K+     +I  D+DP A +   E
Sbjct: 9   HVPVMLQECLDGLVINPDGIYVDVTFGGGGHSRAIFEKLSPKGKLIVFDQDPDARANAWE 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                   F    A F+ L++++   G   VDG++ DLGVSS Q D   RGFS + +  L
Sbjct: 69  A-----PNFHFVAANFAFLRNHLRVMGIPAVDGILADLGVSSHQFDDAKRGFSIRSNEVL 123

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+ +G  +A+ +V   + + L  I    GE     + A  +VK R  +  +TT +L 
Sbjct: 124 DMRMNQAGDFTAAKIVQTYDEEQLAAIFRKYGELDHPFKTAVELVKARNKSKIKTTGELM 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
             +       K+++     + FQALRI VN E++ L + L     +LK  G L+V+S+HS
Sbjct: 184 EALMPVAPKFKDHKFF--AQVFQALRIEVNQEMDVLEKFLLQTADSLKPDGRLVVMSYHS 241

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDRLVK      S      +        P  F+ I +K ++P++E++  N R+RSAKLR
Sbjct: 242 LEDRLVKNLMKRGSLDGSIEKDFFGKVLKP--FEEINRKPILPSEEEIQRNTRARSAKLR 299

Query: 313 AGMRT 317
              R 
Sbjct: 300 IAKRV 304


>gi|331084062|ref|ZP_08333169.1| ribosomal RNA small subunit methyltransferase H 1 [Lachnospiraceae
           bacterium 6_1_63FAA]
 gi|330402424|gb|EGG81994.1| ribosomal RNA small subunit methyltransferase H 1 [Lachnospiraceae
           bacterium 6_1_63FAA]
          Length = 349

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 106/315 (33%), Positives = 163/315 (51%), Gaps = 32/315 (10%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF--CKMGS-NVIALDRDPFAVSCG 74
           G H+ + +++++  L   PG++ LDAT G GG+S     C  G  ++ ALD DP  +   
Sbjct: 50  GMHISICVQEILDFLQIQPGQIGLDATLGYGGHSSKMLGCLEGKGHLYALDVDPIEIKKT 109

Query: 75  QETMR--DYKEQ-FSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           +E +   DYKE   ++ Q  F+ +     + G  D V+ DLGVSSMQID  +RGF+++  
Sbjct: 110 KERLEKMDYKEDILTIKQMNFADVDQLKEEAGGFDFVLADLGVSSMQIDNPERGFTYKFE 169

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTT 188
           GPLD+R++   GIS ++ +   +  +L  +L    +E  A  I++ I+   R+  P  TT
Sbjct: 170 GPLDLRLNPEKGISVAERLKDISQPELEGMLIENSDEPYAKEISNTIISEIRRGNPITTT 229

Query: 189 QDLSSLIQKT-VYFSKNNRIH----PATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
             L   ++K  V   +  R         R+FQALRI VN+E E L   +      L  G 
Sbjct: 230 TQLQKAVEKALVRIPEKERKEMVKKSCARTFQALRIDVNSEFEVLEAFMEKLPTVLNKGA 289

Query: 244 LLIVVSFHSLEDRLVKKFFAS--RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
            + +++FHS EDRLVKK F    R G                V+  I+K V+ P+ E+ A
Sbjct: 290 RVAILTFHSGEDRLVKKAFQRFYREG----------------VYSEISKDVIRPSAEECA 333

Query: 302 FNRRSRSAKLRAGMR 316
            N RSRS K+R  ++
Sbjct: 334 RNSRSRSTKMRWAIK 348


>gi|71893756|ref|YP_279202.1| putative S-adenosyl-methyltransferase [Mycoplasma hyopneumoniae J]
 gi|72080726|ref|YP_287784.1| S-adenosyl-methyltransferase [Mycoplasma hyopneumoniae 7448]
 gi|88909202|sp|Q4A7X8|RSMH_MYCH7 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|88909203|sp|Q4A9T0|RSMH_MYCHJ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|71851883|gb|AAZ44491.1| putative S-adenosyl-methyltransferase [Mycoplasma hyopneumoniae J]
 gi|71913850|gb|AAZ53761.1| S-adenosyl-methyltransferase [Mycoplasma hyopneumoniae 7448]
          Length = 296

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 112/309 (36%), Positives = 164/309 (53%), Gaps = 26/309 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           HVPVLLE++I  L   P    +D T G GG+S +  +  SN  ++  D+D  A+   +  
Sbjct: 2   HVPVLLEELILALEINPKGFYVDLTLGRGGHSLAILEKISNGKLVVFDKDQDALDQTRPK 61

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +  YK+   +  + FS+   Y+ + G   VDG + DLGVSS QID  +RGFS+ K G LD
Sbjct: 62  LLAYKQNIEIIWSDFSRFDFYLENLGIQFVDGFIIDLGVSSPQIDDPERGFSYSKDGNLD 121

Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM  S  +SA  V+N+   + L  I    G+   A  IA AI+  R   P +TT +L +
Sbjct: 122 MRMDKSQKLSAFIVLNEYPYEKLVEIFFKYGQIPYAREIARAIINSR---PLKTTFELVN 178

Query: 194 LIQKTV---YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L++K +      K N I      FQA+RI VNNE++ L + L    K LK G  + +++F
Sbjct: 179 LVKKVIPALVLVKKNFIK---NVFQAVRIEVNNELDSLQKLLEKLPKFLKQGSKVAIITF 235

Query: 251 HSLEDRLVKKFFAS--RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+VKK F    R  K+   +  +P           + KV  P   ++  N R++S
Sbjct: 236 HSLEDRIVKKAFLDLIRKDKLEFFQKGLP---------KFSMKVFRPKANELKSNPRAKS 286

Query: 309 AKLRAGMRT 317
           AKLR  ++ 
Sbjct: 287 AKLRLLLKN 295


>gi|291563183|emb|CBL41999.1| S-adenosyl-methyltransferase MraW [butyrate-producing bacterium
           SS3/4]
          Length = 360

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 102/318 (32%), Positives = 163/318 (51%), Gaps = 28/318 (8%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCG 74
           G H+ + + +++  L+  PG   LDAT G GG++    K      ++  LD DP  +   
Sbjct: 54  GMHISICVNEILDFLDIRPGMQGLDATLGYGGHTTEMLKKLEGQGHMYGLDVDPIEIVKT 113

Query: 75  QETMRDY---KEQFSLFQATFSQLQDYVPDKGV-DGVVFDLGVSSMQIDCGDRGFSFQKS 130
           +  +++    ++  ++ Q  F+ +   VP+ G+ D V+ DLGVSSMQID  +RGF+++  
Sbjct: 114 KARLKERGFDEDILTVKQMNFADIDKLVPETGLFDFVLADLGVSSMQIDNPERGFTYKAD 173

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTT 188
           GPLD+R++   GISA++ + Q +++++  +     +E  A  IA  I KR R+    +TT
Sbjct: 174 GPLDLRLNPEKGISAAERLKQMDMEEIAGMFVENSDEPYAEEIAREIAKRNRKRQYIETT 233

Query: 189 QDLSSLIQKTVYFSKNNRIHPAT-----RSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
             L  +I+ T+ F        A      R FQALRI VN E E L   L      L  GG
Sbjct: 234 TGLKEVIETTLSFIPEKERKEAVKKSCQRCFQALRIDVNQEFEVLESFLTKLPGILAPGG 293

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
              +++FHS EDRLVK +F  + GK               ++  +   V+ P+ E+   N
Sbjct: 294 RAAILTFHSGEDRLVKYYF--KEGK------------KDGLYSDVANDVIRPSAEECQRN 339

Query: 304 RRSRSAKLRAGMRTVERS 321
            R+RS K+R  +R  E S
Sbjct: 340 PRARSTKMRWAIREGENS 357


>gi|332882630|ref|ZP_08450242.1| S-adenosyl-methyltransferase MraW [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332679430|gb|EGJ52415.1| S-adenosyl-methyltransferase MraW [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 304

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 111/308 (36%), Positives = 166/308 (53%), Gaps = 17/308 (5%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSN--VIALDRDPFAVS 72
           +I  H+PVLL++ I  L   PG   +D TFG GG+SR    ++G N  + A D+D  A++
Sbjct: 4   SISYHIPVLLKQSIDGLAIKPGGTYVDVTFGGGGHSREILNRLGENGRLYAFDQDADALN 63

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQK 129
               T+ D   +F+L    F  L+ Y+   GV   DGV+ D GVSS Q D  +RGFS + 
Sbjct: 64  ---NTIDD--PRFTLIHQNFKYLKQYLRFYGVSEVDGVLGDFGVSSHQFDVAERGFSTRF 118

Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            G LDMRM+  S ++A  VVN+ +   LTRI  + GE K A  IA AI+  RQ  P +  
Sbjct: 119 EGALDMRMNQQSELTAQQVVNEYDEAALTRIFSLYGELKNARAIARAIIAFRQHTPIRLG 178

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L   ++  +   K N++    + +Q++RI VN E+E L   L      +K GG + ++
Sbjct: 179 STLQEAVRAFLPKFKENKV--LAQIYQSIRIEVNAEMEVLESFLLQLPAVVKVGGRISLI 236

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           S+HSLEDR VK+F   R G++               F+ +   +++P + ++  N R+RS
Sbjct: 237 SYHSLEDRCVKRFI--RDGQMEGAPEKDWYGNVSVPFKKVG-GLILPDEAEITINNRARS 293

Query: 309 AKLRAGMR 316
           AKLR   R
Sbjct: 294 AKLRIAER 301


>gi|124024411|ref|YP_001018718.1| S-adenosyl-methyltransferase MraW [Prochlorococcus marinus str. MIT
           9303]
 gi|262824953|sp|A2CD93|RSMH_PROM3 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|123964697|gb|ABM79453.1| Predicted S-adenosylmethionine-dependent methyltransferase
           [Prochlorococcus marinus str. MIT 9303]
          Length = 310

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 102/285 (35%), Positives = 156/285 (54%), Gaps = 25/285 (8%)

Query: 37  GKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQ 94
           G +++DAT G GG+S    +   ++  I LD+DP A +   E +  + ++  +    F  
Sbjct: 36  GGLMIDATLGGGGHSALLLERHPDLRLIGLDQDPTARAAAAERLALFGDRVKIVATNFV- 94

Query: 95  LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANV 153
             D+ P +    V+ DLGVSS Q+D   RGFSF+  GPLDMRM+   G +A++++ +   
Sbjct: 95  --DFSPAEPAVVVMADLGVSSPQLDVAKRGFSFRLDGPLDMRMNPQVGETAAELIGRLEE 152

Query: 154 KDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPAT 211
            +L  ++   GEE+ + RIA  I     +  P+  T  L+  +       ++  RIHPAT
Sbjct: 153 TELADLIYAYGEERLSRRIARRIKHDLAEQGPYAGTAALAYAVAGCYPPKARRGRIHPAT 212

Query: 212 RSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMA 271
           R+FQALRI VN+E++ L + L+ A   L  GGLL V+SFHSLEDR VK  F  R  ++  
Sbjct: 213 RTFQALRIAVNDELDALDRFLQKAPDWLVPGGLLAVISFHSLEDRRVKTAFL-RDQRL-- 269

Query: 272 VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
                         + +T+K +V ++ ++A N RSRSAK R   R
Sbjct: 270 --------------ERLTRKPLVASEMEIAANPRSRSAKCRFARR 300


>gi|34540382|ref|NP_904861.1| S-adenosyl-methyltransferase MraW [Porphyromonas gingivalis W83]
 gi|42559440|sp|Q7MWN0|RSMH_PORGI RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|34396695|gb|AAQ65760.1| S-adenosyl-methyltransferase MraW [Porphyromonas gingivalis W83]
          Length = 311

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 106/303 (34%), Positives = 163/303 (53%), Gaps = 17/303 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+PV+L + +  L   P    +D TFG GG+SR+  +  S+   +   D+D  A +C + 
Sbjct: 11  HIPVMLGECLEGLRIDPDGCYVDVTFGGGGHSRAIVEKLSSKGRLYGFDQD--ADAC-RN 67

Query: 77  TMRDYKEQFSLFQATFSQL---QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++D  E+F+   + F  L    DY  + GVDG++ DLGVSS   D  +RGFSF+   PL
Sbjct: 68  ILQD--ERFTFVTSNFRYLANFMDYYGEDGVDGILADLGVSSHHFDEEERGFSFRSESPL 125

Query: 134 -DMRMSCSGISASD-VVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS--APFQTTQ 189
            DMRM+      +  ++N+ +   L+ +    GE KQA R A +IV  R+S     QT  
Sbjct: 126 LDMRMNARAGRNAAAILNEYDASSLSALFYHYGELKQARRFAASIVHYRESLSGGLQTVG 185

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            L   ++  +  S           FQALRI VN+E+  L Q L +A   L++GG L+V++
Sbjct: 186 QLLEAVRGLI--SPREEKKQLACIFQALRIEVNDELGALQQMLEAALGCLRSGGRLVVMT 243

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           +HSLEDR+VK      + K      +    A  + +Q IT+K +  + ++++ N RSRSA
Sbjct: 244 YHSLEDRMVKNVLRYGTVKAPDEDSLRLYGAPQSPWQQITRKPLTASTKELSDNPRSRSA 303

Query: 310 KLR 312
           KLR
Sbjct: 304 KLR 306


>gi|226328337|ref|ZP_03803855.1| hypothetical protein PROPEN_02231 [Proteus penneri ATCC 35198]
 gi|225203070|gb|EEG85424.1| hypothetical protein PROPEN_02231 [Proteus penneri ATCC 35198]
          Length = 216

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 96/220 (43%), Positives = 127/220 (57%), Gaps = 12/220 (5%)

Query: 108 VFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEE 166
           + DLGVSS Q+D  +RGFSF + GPLDMRM   SG SA+  +  A   D+T +L   GEE
Sbjct: 1   MLDLGVSSPQLDDPERGFSFMRDGPLDMRMDPTSGQSAAQWLMTAEEDDITWVLKTFGEE 60

Query: 167 KQASRIAHAIVKRRQSA-PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEI 225
           + A RIA AIV R ++  P   T+ L+ LI       + ++ HPATRSFQA+RI++N+E+
Sbjct: 61  RFAKRIARAIVARNKTEEPLTRTKQLADLISDASPVKERHK-HPATRSFQAIRIYINSEL 119

Query: 226 EELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP------SN 279
           +E+ + L+ A   L   G L V+SFHSLEDRLVK+F    S K   V   IP        
Sbjct: 120 DEIEKALKGAVSVLAPEGRLSVISFHSLEDRLVKRFIRDES-KGPVVPAGIPLTEAQIKE 178

Query: 280 AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319
              A   SI K  + PT  +V  N R+RS+ LR   R  E
Sbjct: 179 LGSARLSSIHK--MKPTGVEVEENPRARSSVLRVAQRIEE 216


>gi|225568788|ref|ZP_03777813.1| hypothetical protein CLOHYLEM_04867 [Clostridium hylemonae DSM
           15053]
 gi|225162287|gb|EEG74906.1| hypothetical protein CLOHYLEM_04867 [Clostridium hylemonae DSM
           15053]
          Length = 351

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 110/337 (32%), Positives = 171/337 (50%), Gaps = 43/337 (12%)

Query: 3   SKSCKTMSSAIHH---TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF--CKM 57
            K  KT+S  I       G H+ + +++++  L   PG+  LDAT G GG++     C  
Sbjct: 32  EKYAKTVSRVIQKGSTPAGMHISICVKEILEFLQIRPGQRGLDATLGYGGHTSKMLECLK 91

Query: 58  G-SNVIALDRDPFAVSCGQETMRDYK---------EQFSLFQATFSQLQDYVPDKGV-DG 106
           G  ++ ALD DP       E++R  K         +  ++    F+++     + G+ D 
Sbjct: 92  GQGHIYALDVDPI------ESVRTAKRLEKLGYGPDILTVKLQNFAKIDQVSREAGLFDF 145

Query: 107 VVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGE 165
           V+ DLGVSSMQID  DRGF+++  GPLD+RM+   GISA++ +     ++L  +L    +
Sbjct: 146 VLADLGVSSMQIDNPDRGFTYKAEGPLDLRMNPQKGISAAERLRDITKEELEGMLRENSD 205

Query: 166 EKQASRIAHAIVKR-RQSAPFQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRI 219
           E   + IA A+ ++ R+    +TT  L   I++ + F      K      + R+FQALRI
Sbjct: 206 EPYGAEIAEAVTEKIRKGGEIETTTQLYKTIEEALAFLPEKDRKEAVKKSSQRTFQALRI 265

Query: 220 FVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSN 279
            VN+E E L   L      L  GG + +++FHS EDRLVKK F                 
Sbjct: 266 DVNSEFEALYSFLEKLPDVLAPGGRVAILTFHSGEDRLVKKSFK--------------QF 311

Query: 280 AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           A   V+  I+K+V+ P+QE+   N R+RS K+R  +R
Sbjct: 312 AKSGVYSEISKEVIRPSQEECRQNGRARSTKMRWAVR 348


>gi|295698684|ref|YP_003603339.1| S-adenosyl-methyltransferase MraW [Candidatus Riesia pediculicola
           USDA]
 gi|291157297|gb|ADD79742.1| S-adenosyl-methyltransferase MraW [Candidatus Riesia pediculicola
           USDA]
          Length = 310

 Score =  147 bits (370), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 101/305 (33%), Positives = 171/305 (56%), Gaps = 18/305 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQ 75
           +H+ VL E+VI  LN       +D TFG GG+S+   S  +    +IA+DRDP ++S  +
Sbjct: 5   NHIAVLPEEVIEGLNIKRDGTYIDCTFGQGGHSKLILSKLEKKGKLIAIDRDPKSISVAK 64

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           + ++D   +F +    FS +  +  ++     V+G++ DLG+S +QI+  +RGFSF+++G
Sbjct: 65  K-IKD--SRFIIKHGLFSDIYQFAKEEKIVGKVNGILLDLGISMIQINDENRGFSFRRNG 121

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ---T 187
            LDMRM+   GI A   + +A  +++  IL   GEEK++ +I+ +I ++      +   +
Sbjct: 122 SLDMRMNPEVGIPAKKWLEKAKREEIELILRRYGEEKKSRKISRSIFRQNHKKNLKKITS 181

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T+ L  ++ + V +    R HPATR+FQA+RI +NNE+EEL + L  +   L     + V
Sbjct: 182 TRQLVEIVSQIVSYK---RKHPATRTFQAIRIHINNELEELKEVLEKSLMVLAPLSRIAV 238

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +SFHSLE R++K F        +  +     N    +   + +K + P + +V  N +SR
Sbjct: 239 ISFHSLESRIIKNFIKKYDSNSIINKKTFKKNIPEYIKLKLIEK-IKPKRSEVYKNPKSR 297

Query: 308 SAKLR 312
           SA LR
Sbjct: 298 SALLR 302


>gi|116072034|ref|ZP_01469302.1| methyltransferase [Synechococcus sp. BL107]
 gi|116065657|gb|EAU71415.1| methyltransferase [Synechococcus sp. BL107]
          Length = 285

 Score =  147 bits (370), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 102/289 (35%), Positives = 151/289 (52%), Gaps = 26/289 (8%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91
           P    V++DAT G GG+S    +   G ++I LD+DP A +   E +  + ++  +    
Sbjct: 13  PHQNGVLIDATLGGGGHSALLLERFPGFHLIGLDQDPTARAAAAERLAAFGDRVEILATN 72

Query: 92  FSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS--CSGISASDVVN 149
           F+    Y P   V  V+ DLGVSS Q+D  +RGFSF+  GPLDMRM+      +A+++++
Sbjct: 73  FAS---YTPPAPVLMVLADLGVSSPQLDVAERGFSFRLDGPLDMRMNPGSDAETAAELID 129

Query: 150 QANVKDLTRILGILGEEKQASRIAHAI-VKRRQSAPFQTTQDLSSLIQKTVYF-SKNNRI 207
           +     L  ++   GEE+ + RIA  I        P++ T  L+  +       ++  RI
Sbjct: 130 RLEENALADLIYGYGEERLSRRIARRIKADLAAQGPYEGTAALAYAVAGCYPPKARRGRI 189

Query: 208 HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSG 267
           HPATR+FQALRI VN+E+  L + L  A   L+ GG++ V+SFHSLEDR VK  F     
Sbjct: 190 HPATRTFQALRIAVNDELAVLDRLLDQAPDWLEPGGVMGVISFHSLEDRRVKTAFLQDE- 248

Query: 268 KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
                             + IT+K  V T+++   N RSRSAK R   R
Sbjct: 249 ----------------RLERITRKPTVATEDEQDSNPRSRSAKWRLARR 281


>gi|266625237|ref|ZP_06118172.1| S-adenosyl-methyltransferase MraW [Clostridium hathewayi DSM 13479]
 gi|288862867|gb|EFC95165.1| S-adenosyl-methyltransferase MraW [Clostridium hathewayi DSM 13479]
          Length = 349

 Score =  147 bits (370), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 104/313 (33%), Positives = 160/313 (51%), Gaps = 28/313 (8%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCG 74
           G H+ + + +++  L   PG+  LDAT G GG++R   K      ++ ALD DP  ++  
Sbjct: 50  GMHLSICVREILDFLQIKPGQKGLDATLGYGGHTREMLKCLQSQGHLYALDVDPIELAKT 109

Query: 75  QETMRDY---KEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           +E ++      E  ++ Q  F+ +     + G  D V+ DLGVSSMQID  DRGFS++  
Sbjct: 110 RERLQSQGFGPEILTIIQENFANIDRVAAEVGPFDFVLADLGVSSMQIDNPDRGFSYKTE 169

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTT 188
           GPLD+R++   GI+A++ +     ++L  +L    +E  A  IA A+V+  R+  P  TT
Sbjct: 170 GPLDLRLNPEKGITAAERLQTIEEEELRGMLLENADEPYAEEIARAVVQEIRRGNPIDTT 229

Query: 189 QDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
             L  +I+K +        K        R+FQALRI VN+E E L   L      L  GG
Sbjct: 230 TRLRQVIEKALSRVPAADRKEAVKKSCQRTFQALRIDVNSEFEVLYSFLEKLPDVLAPGG 289

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            + V++FHS EDRLVKK F     +               V+  I  +V+ P+ E+   N
Sbjct: 290 RVAVLTFHSGEDRLVKKSFKRLKKE--------------GVYSEIADEVIRPSAEECLRN 335

Query: 304 RRSRSAKLRAGMR 316
            R+RS K+R  ++
Sbjct: 336 GRARSTKMRWAVK 348


>gi|42559447|sp|Q7U3X9|RSMH_SYNPX RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 296

 Score =  146 bits (369), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 108/302 (35%), Positives = 160/302 (52%), Gaps = 30/302 (9%)

Query: 20  HVPVLLEKVI--ALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQ 75
           HVPVL E V+      P    +++DAT G GG+S    +   G  +I LD+D  A +   
Sbjct: 8   HVPVLSEAVMDAGRQMPRAEGLLIDATLGGGGHSALMLEQQPGLRLIGLDQDATARAAAA 67

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           E +  + ++ ++    F++   Y P +    V+ DLGVSS Q+D  +RGFSF+  GPLDM
Sbjct: 68  ERLAPFGDRVTIVATNFAE---YTPPEPALMVLADLGVSSPQLDVAERGFSFRLDGPLDM 124

Query: 136 RMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI-VKRRQSAPFQTTQDLS 192
           RM+    G +A++++++    +L  ++   GEE+ + RIA  I         +  T  L+
Sbjct: 125 RMNAVGDGATAAELIDRLEENELADLIYAYGEERLSRRIARRIKADLAVQGAYSGTAALA 184

Query: 193 SLIQKTVYFSKNN--RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +    Y  +    RIHPATR+FQALRI VN+E+  L + L+ A   L+ GGL+ ++SF
Sbjct: 185 YAV-AGCYPPQGTPRRIHPATRTFQALRIAVNDELGVLDRLLQQAPDWLEPGGLVGIISF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDR VK  F                       + IT+K VV T+E+   N RSRSAK
Sbjct: 244 HSLEDRRVKTAFLRDE-----------------RLERITRKPVVATEEEEEANPRSRSAK 286

Query: 311 LR 312
            R
Sbjct: 287 WR 288


>gi|171915286|ref|ZP_02930756.1| S-adenosyl-methyltransferase MraW [Verrucomicrobium spinosum DSM
           4136]
          Length = 352

 Score =  146 bits (368), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 102/317 (32%), Positives = 161/317 (50%), Gaps = 41/317 (12%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF----- 69
           G H+P++L +++ +L P PG+  LD T G GG++ +  +       ++ LD+D       
Sbjct: 58  GQHIPIMLPEILEVLAPQPGERALDCTLGYGGHAEALLRAVQPDGCLMGLDQDAIEIEKT 117

Query: 70  -----AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRG 124
                A+   + T+R  +  F+  +     L +     G D ++ DLGVSSMQID   RG
Sbjct: 118 GARLKALGFPEATLRVVRMNFAGLR---KALDEAAWSDGADVILADLGVSSMQIDNPARG 174

Query: 125 FSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           FSF+  GPLDMRM+   G+ A +++ + +V  LT +L    +E  +  +A A+  +    
Sbjct: 175 FSFKSDGPLDMRMNPLRGVPARELLRKISVPKLTALLEENADETNSILLAAALAGQD--- 231

Query: 184 PFQTTQDLSSLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            F  T  L++ +++ +  +  +        R FQALRI VN+E   L   LR    AL+ 
Sbjct: 232 -FAKTPTLAAAVKRALPRHLDEEEVTATTRRVFQALRIAVNDEFGALDSFLRVLPTALRP 290

Query: 242 GGLLIVVSFHSLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
           GG + V++FHS EDR VKK F   SR G                 F +I+ +V  P+ E+
Sbjct: 291 GGRVAVLTFHSGEDRRVKKAFLAGSRDG----------------TFSAISDEVQRPSPEE 334

Query: 300 VAFNRRSRSAKLRAGMR 316
           +  N R+ SAKLR  +R
Sbjct: 335 IRLNTRAASAKLRWAVR 351


>gi|87309877|ref|ZP_01092011.1| hypothetical protein DSM3645_03658 [Blastopirellula marina DSM
           3645]
 gi|87287641|gb|EAQ79541.1| hypothetical protein DSM3645_03658 [Blastopirellula marina DSM
           3645]
          Length = 262

 Score =  146 bits (368), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 106/281 (37%), Positives = 155/281 (55%), Gaps = 29/281 (10%)

Query: 45  FGAGGYSRSFC-KMGSN--VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD 101
            G GG++R    ++G    VIA DRD  A+   ++++R       + Q  F +L   + D
Sbjct: 1   MGGGGHTRQLAERVGDEGLVIACDRDLAAIERAEQSLRGLP--IKVTQRNFCELPSVLQD 58

Query: 102 ---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM-SCSGISASDVVNQANVKDLT 157
                +DG++ DLG+SS Q+   +RGFSF   GPLD+R     G +A+D+VN  + KDL 
Sbjct: 59  LEIDLIDGLLLDLGLSSDQLADRNRGFSFDSDGPLDLRFDETEGDTAADLVNLLSEKDLA 118

Query: 158 RILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKN--NRIHPATRSFQ 215
            ++   GEE+ + RIA  +  RR+  PF    DL+ L+  + Y  +    RIHPATR+FQ
Sbjct: 119 DVIYQNGEERLSRRIAKKVCLRRKEKPFLLASDLAELVT-SCYPGRGARERIHPATRTFQ 177

Query: 216 ALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM 275
           ALRI VN E+  L   L+SA   ++ GG + V+SFHSLEDR VK+ F             
Sbjct: 178 ALRIAVNRELSSLESILKSAPDFIRPGGKIAVISFHSLEDRRVKEAF------------- 224

Query: 276 IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
                     + +TKK ++P++E++  N RSRSAKLR   R
Sbjct: 225 ----REDERLEPMTKKPIIPSEEEIMRNPRSRSAKLRVARR 261


>gi|118474367|ref|YP_891757.1| S-adenosyl-methyltransferase MraW [Campylobacter fetus subsp. fetus
           82-40]
 gi|263445750|sp|A0RNH4|RSMH_CAMFF RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|118413593|gb|ABK82013.1| S-adenosyl-methyltransferase MraW [Campylobacter fetus subsp. fetus
           82-40]
          Length = 307

 Score =  146 bits (368), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 93/299 (31%), Positives = 160/299 (53%), Gaps = 10/299 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H+PVLL+ V+          ILD T G GG+S +      N  +IA DRD  ++S  +  
Sbjct: 5   HIPVLLKPVLNSFKDIKNGTILDCTLGYGGHSEAILISNPNLKIIACDRDSESLSFCKAK 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
              Y ++  ++++ F+ + + +  + + G++ D+GVSS+Q+D  +RGFS   S  LDMRM
Sbjct: 65  FEKYSDRIKIYKSNFAGILNKIDHEDIRGILADIGVSSLQLDLDERGFSIN-SNNLDMRM 123

Query: 138 SCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
             +   SA +++N  +   L  I     E   A  +A  IV  R  +P ++ ++LSS+I 
Sbjct: 124 DKNQTFSAKELINSYSKDQLADIFYKYAELPNAKSLAQKIVDARDKSPIKSAKELSSIIG 183

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
           ++    KN  +  A  +FQA+RI VN E++EL   L   + +     +L ++SFHSLED+
Sbjct: 184 RSNL--KNRSVSIAILAFQAIRIEVNKELDELNNLLNLIKSSKINNAILDIISFHSLEDK 241

Query: 257 LVKKFFASRSGKVMAVRHMIPS---NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           + K  F       +    ++     N H ++ + +TKK + P+++++  N RS  AK+R
Sbjct: 242 IAKSTFKEWEKSCICDNFVMKCECGNNH-SIGKILTKKPITPSEDEIKQNPRSSCAKMR 299


>gi|254468248|ref|ZP_05081654.1| S-adenosyl-methyltransferase MraW [beta proteobacterium KB13]
 gi|207087058|gb|EDZ64341.1| S-adenosyl-methyltransferase MraW [beta proteobacterium KB13]
          Length = 212

 Score =  145 bits (367), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 90/212 (42%), Positives = 126/212 (59%), Gaps = 13/212 (6%)

Query: 109 FDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEK 167
            DLGVSS Q+D   RGFSF  +GPLDMRM  S  + A +VVN+ N  DL +I    GEEK
Sbjct: 1   MDLGVSSPQLDDASRGFSFMHNGPLDMRMDQSQTLDACEVVNKYNESDLIKIFRDYGEEK 60

Query: 168 QASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEE 227
            A RIA  I K R      +T +L+++++K+V ++ N+R HPAT+ FQALRI VN E+ E
Sbjct: 61  FAKRIASNICKIRNEKNITSTLELANIVKKSVPYT-NSRKHPATKVFQALRIEVNQELNE 119

Query: 228 LAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSG-------KVMAVRHMIPSNA 280
           L + L      LK  G L+ ++FHSLEDR+VK F    +        K + +R+   ++ 
Sbjct: 120 LKEALPLLFDVLKPQGRLLALTFHSLEDRIVKNFIKEITKLAPDTIPKFIPIRN---TDH 176

Query: 281 HPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           H     ++   ++  T+E V  N RSRSA+LR
Sbjct: 177 HEKTKANVICNLIASTEE-VEANPRSRSARLR 207


>gi|225388291|ref|ZP_03758015.1| hypothetical protein CLOSTASPAR_02026 [Clostridium asparagiforme
           DSM 15981]
 gi|225045638|gb|EEG55884.1| hypothetical protein CLOSTASPAR_02026 [Clostridium asparagiforme
           DSM 15981]
          Length = 350

 Score =  145 bits (367), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 106/315 (33%), Positives = 160/315 (50%), Gaps = 32/315 (10%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF--CKMGSNVI-ALDRDPFAVSCG 74
           G H+ + +++++  L   PG+  LDAT G GG++     C  G   I ALD DP      
Sbjct: 50  GMHISICVKEILDFLQIQPGQNGLDATLGYGGHTLEMLKCLEGKGHIHALDVDPIESEKT 109

Query: 75  QETMRDY---KEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           +  + D     E  ++    F+++     + G  D V+ DLGVSSMQID  +RGF+F+  
Sbjct: 110 KARLADLGYGPEILTVRLQNFAEIDQVAAEAGRFDFVLADLGVSSMQIDNPERGFTFKAE 169

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTT 188
           GPLD+RM+   GISA+  + +  +++LT +L    +E  A  IA  +  R ++     TT
Sbjct: 170 GPLDLRMNPERGISAAQRLKEITLEELTGMLTENADEPYAEEIAREVTGRLKRGEEIATT 229

Query: 189 QDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
             L  +I   + F      K      + R+FQALRI VNNE E L   L    + L  GG
Sbjct: 230 TKLYQVIGDALAFLPEKDRKEAVKKSSQRTFQALRIDVNNEYEALYAFLEKLPEVLAPGG 289

Query: 244 LLIVVSFHSLEDRLVKKFFA--SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
              +++FHS EDRLVKK F    + G+                +  I ++V+ P+QE+ A
Sbjct: 290 RAAILTFHSGEDRLVKKSFKQYKKEGR----------------YSDICEEVIRPSQEECA 333

Query: 302 FNRRSRSAKLRAGMR 316
            N R+RS K+R  +R
Sbjct: 334 RNSRARSTKMRWAVR 348


>gi|167745358|ref|ZP_02417485.1| hypothetical protein ANACAC_00049 [Anaerostipes caccae DSM 14662]
 gi|167655079|gb|EDR99208.1| hypothetical protein ANACAC_00049 [Anaerostipes caccae DSM 14662]
          Length = 367

 Score =  145 bits (367), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 101/315 (32%), Positives = 161/315 (51%), Gaps = 32/315 (10%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCG 74
           G H+ + +++++  L   PG+  LDAT G GG+++   K      ++ ALD D   +   
Sbjct: 68  GMHISICVKEILEFLQIKPGQTGLDATLGYGGHTQEMLKCLDSKGHLYALDVDAIELEKT 127

Query: 75  QETMRDY---KEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           ++ +       E  ++ Q  F+ +     + G  D V+ DLGVSSMQID  DRGFS++  
Sbjct: 128 RKRLEKLGYGPEILTIRQMNFADIDKIAEEAGPFDFVLADLGVSSMQIDNPDRGFSYKTE 187

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTT 188
           GPLD+R++   G+SA++ +     ++L  +L    +E  A  IA A+V + ++     TT
Sbjct: 188 GPLDLRLNPEKGVSAAERLRTITRQELQGMLMENSDEPHADVIARAVVSKIKKGTAIDTT 247

Query: 189 QDLSSLIQKTVYFSKNNRIHPAT-----RSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
             L  +I++ + F   +    A      R+FQALRI VN+E E L + L      L  GG
Sbjct: 248 TKLREVIEEALEFLPEHEKKEAVKKTCQRTFQALRIDVNSEFEVLYEFLEKLPNVLAKGG 307

Query: 244 LLIVVSFHSLEDRLVKKFFAS--RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
              +++FHS EDRLVKK F    R G                V+Q I+  V+ P+ E+  
Sbjct: 308 RAAILTFHSGEDRLVKKSFKRLLREG----------------VYQEISTDVIRPSAEECR 351

Query: 302 FNRRSRSAKLRAGMR 316
            N R+RS K+R  ++
Sbjct: 352 MNSRARSTKMRWAIK 366


>gi|153855593|ref|ZP_01996709.1| hypothetical protein DORLON_02727 [Dorea longicatena DSM 13814]
 gi|149752014|gb|EDM61945.1| hypothetical protein DORLON_02727 [Dorea longicatena DSM 13814]
          Length = 354

 Score =  145 bits (367), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 103/319 (32%), Positives = 162/319 (50%), Gaps = 34/319 (10%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCG 74
           G H+ + + +++   +  PG+  LDAT G GG++    +      ++  LD DP   +  
Sbjct: 53  GMHISICVNEILDFFDIQPGQQGLDATLGYGGHTSKMLEKLQGEGHIYGLDVDPIESA-- 110

Query: 75  QETMRDYKEQ------FSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSF 127
            +T +  +E+       ++    F+ +     + G  D V+ DLGVSSMQID  DRGF+F
Sbjct: 111 -KTKKRLEEKGFGPNILTVKLENFANIDKVAEEAGKFDFVLADLGVSSMQIDNPDRGFTF 169

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPF 185
           +  GPLD+RM+   GISA++ +   + ++LT +L    +E  A  IA AI ++ R+    
Sbjct: 170 KAEGPLDLRMNPEKGISAAERLRDISKEELTGMLIENSDEPYAEEIAEAITEKIRKGGKI 229

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRS-----FQALRIFVNNEIEELAQGLRSAEKALK 240
           +TT  L  +I++T+ F        A R      FQALRI VNNE E L   L      LK
Sbjct: 230 ETTTGLHQVIEETLAFIPEKERKEAVRKSSQRVFQALRIDVNNEFEVLYDFLDKLPGVLK 289

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300
            GG + +++FHS EDRLVKK F     +               ++  I K V+ P++E+ 
Sbjct: 290 PGGKVAILTFHSGEDRLVKKSFKQWKKE--------------GLYSEIAKDVIRPSKEEC 335

Query: 301 AFNRRSRSAKLRAGMRTVE 319
             N R++  K+R  +R  E
Sbjct: 336 FRNSRAKCTKMRWAIRAEE 354


>gi|313906115|ref|ZP_07839465.1| S-adenosyl-methyltransferase MraW [Eubacterium cellulosolvens 6]
 gi|313469055|gb|EFR64407.1| S-adenosyl-methyltransferase MraW [Eubacterium cellulosolvens 6]
          Length = 356

 Score =  145 bits (366), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 106/333 (31%), Positives = 164/333 (49%), Gaps = 41/333 (12%)

Query: 11  SAIHHTI-------GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSN 60
           S I H I       G H+P+++++++  L   PG   LD T G GG+S    ++     +
Sbjct: 38  SEIEHIISKGNTPAGMHIPIMVDEILDCLKIEPGMTGLDCTLGYGGHSSRMLELLQGSGH 97

Query: 61  VIALDRDPFAVSCGQETMRDY---KEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSM 116
           + +LD DP  +    E MR     +E ++     F+ +       G  D V+ DLGVSSM
Sbjct: 98  LYSLDVDPIEIQKTTERMRAKGFSEEIWTPVHTNFANIDRVCEQYGPFDFVLADLGVSSM 157

Query: 117 QIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175
           QID  +RGFS++  GPLD+R + S G SA++ +   + ++L  +L    +E  A  IA A
Sbjct: 158 QIDNPERGFSYKTDGPLDLRFNPSKGESAAERLRSLDTEELIGLLIDNSDEPYAEEIAAA 217

Query: 176 IVKR-RQSAPFQTTQDLSSLIQKTVYFS-------KNNRIHPATRS----FQALRIFVNN 223
           +    R+  P  TT  L  LI KT+          K ++     +S    FQALRI VN+
Sbjct: 218 VASAFRKKEPLDTTTALRELITKTLLEDTPLRNALKTDQTEAVKKSCARVFQALRIDVNS 277

Query: 224 EIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPA 283
           E E L + +      LK GG   +++FHS EDR+VKK F                N    
Sbjct: 278 EFEVLVEFMDKLPHILKEGGRAAILTFHSGEDRIVKKEFK--------------RNQKDG 323

Query: 284 VFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           ++  +++ V+ P++E+   N R+ S KLR  +R
Sbjct: 324 LYTEVSRDVIRPSKEECFRNPRAHSTKLRWAIR 356


>gi|312601353|gb|ADQ90608.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Mycoplasma hyopneumoniae 168]
          Length = 291

 Score =  145 bits (366), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 106/300 (35%), Positives = 157/300 (52%), Gaps = 26/300 (8%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDY 81
           +LE++I  L   P    +D T G GG+S +  +  SN  ++  D+D  A+   +  +   
Sbjct: 1   MLEELILALEINPKGFYVDLTLGRGGHSLAILEKISNGKLVVFDKDQDALDQTRPKLLAL 60

Query: 82  KEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138
           K+   +  + FS+   Y+ + G   VDG + DLGVSS QID  +RGFS+ K G LDMRM 
Sbjct: 61  KQNIEIIWSDFSRFDFYLENLGIQFVDGFIIDLGVSSPQIDDPERGFSYSKDGNLDMRMD 120

Query: 139 CS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK 197
            S  +SA  V+N+   + L  I    G+   A  IA AI+  R   P +TT +L +L++K
Sbjct: 121 KSQKLSAFIVLNEYPYEKLVEIFFKYGQIPYAREIARAIINSR---PLKTTFELVNLVKK 177

Query: 198 TV---YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
            +      K N I      FQA+RI VNNE++ L + L    K LK G  + +++FHSLE
Sbjct: 178 VIPALVLVKKNFIKNV---FQAVRIEVNNELDSLQKLLEKLPKFLKQGSKVAIITFHSLE 234

Query: 255 DRLVKKFFAS--RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           DR+VKK F    R  K+   +  +P           + KV  P   ++  N R++SAKLR
Sbjct: 235 DRIVKKAFLDLIRKDKLEFFQKGLP---------KFSMKVFRPKANELKSNPRAKSAKLR 285


>gi|217076157|ref|YP_002333873.1| S-adenosyl-methyltransferase MraW [Thermosipho africanus TCF52B]
 gi|262825832|sp|B7IEL8|RSMH_THEAB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|217036010|gb|ACJ74532.1| S-adenosyl-methyltransferase MraW [Thermosipho africanus TCF52B]
          Length = 291

 Score =  145 bits (366), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 101/306 (33%), Positives = 162/306 (52%), Gaps = 32/306 (10%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H+PV+ ++VI  L      + +D T G GG++     +  +  VI LD D   ++  ++ 
Sbjct: 8   HIPVMPKEVIEHLIWKKDGIYVDCTVGEGGHTLLLASISPDIFVIGLDIDSEVLNIAEKN 67

Query: 78  MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +  +     LF++++  L   +     + V G++ DLG+S+ Q+    RGF+F +  PLD
Sbjct: 68  LSSFT-NVKLFKSSYVDLPVVLKALNIEKVSGILIDLGISTYQLKAEGRGFTFNRDEPLD 126

Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM+     +A DVVN  + K+L  I+   GEE+ + RIA +IV  R   P  +T +L  
Sbjct: 127 MRMNLEQKKTAYDVVNFYSEKELADIIFKYGEERFSRRIARSIVNSR---PINSTLELVE 183

Query: 194 LIQKTV---YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
            I+K +      K  R H AT++FQA+RI VN E+  +   L +    L+ GG L V+SF
Sbjct: 184 AIRKALPPQEIRKRKR-HFATKTFQAIRIEVNGELSNIENFLNNVPDLLEIGGRLAVISF 242

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDRLVK F  + +     +R ++                ++P++E++  N R+RSAK
Sbjct: 243 HSLEDRLVKHFIKNSN----KLRQIVGP--------------IIPSKEEIDENPRARSAK 284

Query: 311 LRAGMR 316
           LR   R
Sbjct: 285 LRIAER 290


>gi|222824174|ref|YP_002575748.1| S-adenosyl-methyltransferase MraW [Campylobacter lari RM2100]
 gi|263447001|sp|B9KD58|RSMH_CAMLR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|222539396|gb|ACM64497.1| S-adenosyl-methyltransferase MraW [Campylobacter lari RM2100]
          Length = 305

 Score =  145 bits (366), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 96/299 (32%), Positives = 159/299 (53%), Gaps = 9/299 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           H+PVLL++V+   +       LD T G GG+S++  +    +  IA D+D  A++  +E 
Sbjct: 5   HIPVLLQEVLDAFDDFDSGDFLDCTLGYGGHSKALLQAHEKLRLIACDKDLEALNFSKEF 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
           ++ ++++ S     F  +   +P + + G++ D+GVSS+Q+D  DRGFS   S  LDMRM
Sbjct: 65  LKKFQDRISFNHIGFKDILTQIPTQNLRGILADIGVSSLQLDKNDRGFSLN-SDFLDMRM 123

Query: 138 SCSGI-SASDVVNQANVKDLTRILGILGE-EKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
             + + SA +VVN  + + L +I    G+    AS +   I+  R      + ++LS +I
Sbjct: 124 DQNNLLSAKEVVNSYSKEALEQIFKDYGDLAPVASMLTQKIINARSQKEITSAKELSQII 183

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
                  +N  +  A   FQALRI VNNE+ EL   L + EKA      L ++SFHSLED
Sbjct: 184 GNAKLKGRN--VSLALLVFQALRIEVNNELGELKSLLENIEKAKLKDCKLAIISFHSLED 241

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHP--AVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           R+VK  F       +     I        ++ + ++KK +  ++E++++N RS  AK+R
Sbjct: 242 RIVKNTFKRWEKDCICDERAIKCECGKGHSLGKILSKKAISASKEEISYNSRSSCAKMR 300


>gi|319953733|ref|YP_004165000.1| ribosomal RNA small subunit methyltransferase h [Cellulophaga
           algicola DSM 14237]
 gi|319422393|gb|ADV49502.1| Ribosomal RNA small subunit methyltransferase H [Cellulophaga
           algicola DSM 14237]
          Length = 302

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 115/303 (37%), Positives = 161/303 (53%), Gaps = 23/303 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H PVLL++ I  LN     + +D TFG GG+S     ++G+   + A D+D  A+    +
Sbjct: 4   HNPVLLKESIDGLNIKSDGIYVDVTFGGGGHSTEILSRLGAKGKLYAFDQDEDALKNAID 63

Query: 77  TMRDYKEQFSLFQATF---SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                 E+F L    F   SQ   +   K VDG++ D GVSS Q D  +RGFS +    L
Sbjct: 64  D-----ERFVLIHENFRFISQFLKFYGIKKVDGILGDFGVSSHQFDVAERGFSTRFDADL 118

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRMS  + +SA DVVN     DL R+L   G+ + A+ IA AI+  R+  P +TT  L 
Sbjct: 119 DMRMSKRNAVSAYDVVNTYAYDDLRRVLFQYGDLRNANAIATAIIANREETPIKTTDQLK 178

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           S +++ +     ++I    + +QA+RI VN EIE + + L      L   G L V+S+HS
Sbjct: 179 SGLKQFLPARVEHKI--LAQIYQAIRIEVNQEIEVIKEFLLQVPDLLNEEGRLSVISYHS 236

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV---VVPTQEDVAFNRRSRSA 309
           LEDRLVK FF  RSGK        P            KKV    VP+++++A N R+RSA
Sbjct: 237 LEDRLVKNFF--RSGKFEGE----PDKDFYGNMSLPLKKVGGLTVPSKKEIAGNNRARSA 290

Query: 310 KLR 312
           KLR
Sbjct: 291 KLR 293


>gi|327330609|gb|EGE72355.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL097PA1]
          Length = 241

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 90/213 (42%), Positives = 122/213 (57%), Gaps = 5/213 (2%)

Query: 104 VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGI 162
           VD V+ DLG+SS QID  +RGFS+    PLDMRM   SG +A+ ++N+++   L R+L  
Sbjct: 10  VDSVLLDLGLSSFQIDEVERGFSYSVDSPLDMRMDQSSGRTAAQILNESDPGALVRMLRE 69

Query: 163 LGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV--YFSKNNRIHPATRSFQALRIF 220
            GEEK A RI  AIV  R   P +T+  L  +I + +     +    HPA R+FQALRI 
Sbjct: 70  YGEEKFADRIVRAIVTERDRQPIETSGRLVEIITEAIPATVRRKRHSHPAKRTFQALRIA 129

Query: 221 VNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVM-AVRHMIPSN 279
           VN E+E L   L  A   L  GG ++V+S+HSLEDR VK+ F         A   M+P +
Sbjct: 130 VNREMETLPAVLPRALDRLDVGGRIVVLSYHSLEDRPVKEAFRDACADTAPAGLPMVPES 189

Query: 280 AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
              A F  +T+    P  ++VA N RS SA+LR
Sbjct: 190 MA-AKFNPVTRGAERPDADEVATNPRSASARLR 221


>gi|223935232|ref|ZP_03627150.1| S-adenosyl-methyltransferase MraW [bacterium Ellin514]
 gi|223896116|gb|EEF62559.1| S-adenosyl-methyltransferase MraW [bacterium Ellin514]
          Length = 353

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 98/314 (31%), Positives = 162/314 (51%), Gaps = 29/314 (9%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCG 74
           G H  + + +++ +L P PG++ +DAT G GG++    +    G  ++ LD DP  +   
Sbjct: 53  GSHRSICVREIMEVLAPKPGEIAVDATLGYGGHALEILRAIQPGGRLVGLDVDPMEMPKT 112

Query: 75  QETMRDY---KEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQ 128
           +  +R      E   + ++ F+ L   +  +G+ G   ++ DLG+SSMQID   RGF+F+
Sbjct: 113 ETRLRSVGAPAESLIIRRSNFAGLPQVLAGEGIPGADIILADLGLSSMQIDNPARGFTFK 172

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
             GPLD+R++   G  AS ++      +L RIL    +E  A  +A  I++ +   P  T
Sbjct: 173 FEGPLDLRLNPERGRPASALLATLKEPELIRILQDNADEPDAGLLAKGILQAQLRYPITT 232

Query: 188 TQDLSSLIQKTVYFSKNNRIHPAT-----RSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           T  L+ +I++    +  N+          R FQALRI VN+E   L   LR+      +G
Sbjct: 233 TTGLAEVIREAFRSAHRNKTKDEANTSIRRVFQALRIAVNDEFGALDMFLRNLPGCSNSG 292

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G + +++FHS EDR VKK F  + GK               V+ SI ++++ P++E+   
Sbjct: 293 GRVAILTFHSGEDRRVKKAF--QDGK------------RAGVYSSIAEEIIRPSREETRS 338

Query: 303 NRRSRSAKLRAGMR 316
           N R+ SAKLR  +R
Sbjct: 339 NPRASSAKLRWAIR 352


>gi|255588801|ref|XP_002534724.1| UDP-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase,
           putative [Ricinus communis]
 gi|223524690|gb|EEF27660.1| UDP-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase,
           putative [Ricinus communis]
          Length = 850

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 95/239 (39%), Positives = 137/239 (57%), Gaps = 16/239 (6%)

Query: 102 KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRIL 160
           + VDG++ DLG+SS QID G RGFSF+  GPLDMRM  S G +A++ +   + K L  ++
Sbjct: 11  QAVDGILLDLGISSPQIDEGVRGFSFRFDGPLDMRMDQSRGKTAAEWLATMSEKQLAEVI 70

Query: 161 GILGEEKQASRIAHAIVKRRQSA-PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRI 219
              GEE+ A ++A AIVK R+      TT  L+ ++   +  ++  + +PATR+FQALRI
Sbjct: 71  RDYGEERFAKQVARAIVKEREDGHAITTTGQLAKIVAGAIPKNEPGQ-NPATRTFQALRI 129

Query: 220 FVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSN 279
           FVN E+EEL+  L    + L+  G L V+SFHSLEDR+VK+F  S        R  +P+ 
Sbjct: 130 FVNQELEELSLVLPDCLQLLRPQGRLAVISFHSLEDRIVKRFIQSEVD-----RDNLPAG 184

Query: 280 AHPAVFQSITK-------KVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDDSFVHLP 331
             P   + + +       K + P + +VA N RSRSA LR   RT   +      V +P
Sbjct: 185 L-PVRAKDLPQPRLLAVGKAIKPGKAEVAANVRSRSAVLRVAERTQGEAFSRRKVVLMP 242


>gi|291539383|emb|CBL12494.1| S-adenosyl-methyltransferase MraW [Roseburia intestinalis XB6B4]
          Length = 350

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 100/313 (31%), Positives = 165/313 (52%), Gaps = 28/313 (8%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF--CKMG-SNVIALDRDPFAVSCG 74
           G H+ +++++++  LN  PG+   DAT G GG++++   C  G  ++ A D DP   +  
Sbjct: 51  GMHISIMVQEILDTLNIQPGETGFDATLGYGGHTKAMLACLNGQGHIYATDVDPEESAKT 110

Query: 75  QETMRD--YKEQ-FSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           ++ + +  Y E   ++    F  + +   + G  D ++ DLGVSSMQID   RGFSF+  
Sbjct: 111 KKRLEELGYGEDILTIRLQNFCTIDEIAKEAGGFDFILADLGVSSMQIDNPKRGFSFKVD 170

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTT 188
           GPLD+R++  +GISA++ ++    ++L  +L    +E     +A AI    R+ +   TT
Sbjct: 171 GPLDLRLNQEAGISAAERLDTITREELAGMLYENSDEPYCEELAKAITDEIRKGSRIDTT 230

Query: 189 QDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
             L  +I+KT+ F      K+       R+FQALRI VN E E L + +     ALK GG
Sbjct: 231 TKLREVIEKTLDFLPEKEKKDTIKKTCQRTFQALRIDVNREFEVLYEFMEKLPDALKPGG 290

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            + +++FHS ED+LVKK               +       ++   +K VV P+ ++ A N
Sbjct: 291 RVAILTFHSGEDKLVKK--------------ALKEGCRAGIYADYSKDVVRPSAQECAQN 336

Query: 304 RRSRSAKLRAGMR 316
            R+RS K+R  +R
Sbjct: 337 GRARSTKMRWAVR 349


>gi|326518102|dbj|BAK07303.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 272

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 96/260 (36%), Positives = 133/260 (51%), Gaps = 22/260 (8%)

Query: 75  QETMRDYK--EQFSLFQATFSQLQDYVPDK--GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           Q T+R Y   + F   +     + + + D   GVDG++ DLG+SSMQ++  DRGFS    
Sbjct: 8   QGTLRAYTHVKNFKYIKHVLGGVDESLADGSCGVDGILIDLGMSSMQVNRSDRGFSVLND 67

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
           GPLDMRM   + ++A D++N     ++ RIL   GEE     +   IVK R++    +T 
Sbjct: 68  GPLDMRMDPRATLTAEDILNSWPELEVGRILRDYGEESNWQSLQRRIVKERKTGGLHSTG 127

Query: 190 DLSSLIQKTVYFS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           +L  LIQ+T   S  +   I  ATR FQALRI VN+E+  L   L S    L   G L V
Sbjct: 128 ELVKLIQRTCTISGGRQGWIKTATRVFQALRIAVNDELRTLEDALHSCFDCLATDGRLAV 187

Query: 248 VSFHSLEDRLVKKFF-------ASRSGKVMAVRHMIPSNAHPAVFQSI--------TKKV 292
           +SFHSLEDR+VK+ F        +           I     P   Q +        TK+ 
Sbjct: 188 ISFHSLEDRIVKQTFLELIHGGEADGDDDDLAYADIDDEDEPWFKQRVQGTNGTVLTKRP 247

Query: 293 VVPTQEDVAFNRRSRSAKLR 312
           + P+QE+   N+R RSAKLR
Sbjct: 248 ITPSQEEEKLNQRCRSAKLR 267


>gi|126643217|ref|YP_001086201.1| S-adenosylmethionine methyltransferase [Acinetobacter baumannii
           ATCC 17978]
          Length = 223

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 90/218 (41%), Positives = 127/218 (58%), Gaps = 10/218 (4%)

Query: 102 KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRIL 160
           + VDG++ DLGVSS Q+D  +RGFSF + GPLDMRM  S G++A++ + +   +DL  I+
Sbjct: 7   QSVDGIMADLGVSSPQLDQAERGFSFMQDGPLDMRMDNSKGLTAAEWLLEVEEEDLANII 66

Query: 161 GILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIF 220
              GEE+ + RIA AI   +Q+    TT  L+ ++ KT +       HPATR+FQA+RI 
Sbjct: 67  YQYGEERYSRRIARAI---KQAGKLDTTAQLAEIV-KTAHPKWEKHKHPATRTFQAIRIA 122

Query: 221 VNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA 280
           +N E++++   L  A   LK  G L V+SFHSLEDRL+K+F    S         +P   
Sbjct: 123 INKELDDIEVFLPQAVDLLKPKGRLSVISFHSLEDRLIKQFIQKESTLAEDSGWGMPQQ- 181

Query: 281 HPAVFQSITKKV--VVPTQEDVAFNRRSRSAKLRAGMR 316
              V     KK+  V  ++E+V  N RSRSA LR   R
Sbjct: 182 --QVDTRRLKKISRVRASEEEVKANPRSRSAWLRVAER 217


>gi|197304029|ref|ZP_03169061.1| hypothetical protein RUMLAC_02766 [Ruminococcus lactaris ATCC
           29176]
 gi|197296997|gb|EDY31565.1| hypothetical protein RUMLAC_02766 [Ruminococcus lactaris ATCC
           29176]
          Length = 351

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 98/315 (31%), Positives = 169/315 (53%), Gaps = 31/315 (9%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF--CKMG-SNVIALDRDPFAVSCG 74
           G H+ +++++++  L+  PG+   DAT G GG++++   C  G  ++ A D DP   +  
Sbjct: 51  GMHISIMVKEILDFLDIQPGQTGFDATLGYGGHTKAMLECLKGQGHIYATDVDPEESAKT 110

Query: 75  QETMRDY---KEQFSLFQATFSQLQDYVPDK--GVDGVVFDLGVSSMQIDCGDRGFSFQK 129
           ++ + +    +E  ++    F  + D + +K  G D ++ DLGVSSMQID   RGFSF+ 
Sbjct: 111 KKRLEEQGFGEEILTVCLQNFCTI-DEIAEKVGGFDFILADLGVSSMQIDNPKRGFSFKA 169

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQT 187
            GPLD+R++   GISA++ ++  + ++L  +L    +E     +A AI    R+     T
Sbjct: 170 DGPLDLRLNQEKGISAAERLDTISREELAGMLYENSDEPYCEELAKAITDEIRRGNRIDT 229

Query: 188 TQDLSSLIQKTVYFSKNNR------IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
           T  L ++I+KT+ F  +N+           R+FQALRI VNNE E L + +     AL+ 
Sbjct: 230 TTKLRNVIEKTLSFLPDNKEKKDIVKKTCQRTFQALRIDVNNEFEVLYEFMEKLPDALRP 289

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           GG + +++FHS ED+LVKK               + +     ++    K V+ P+ ++ A
Sbjct: 290 GGRVAILTFHSGEDKLVKK--------------ALKAGYKAGIYSDYAKDVIRPSAQECA 335

Query: 302 FNRRSRSAKLRAGMR 316
            N R+RS K+R  ++
Sbjct: 336 KNGRARSTKMRWAVK 350


>gi|315453816|ref|YP_004074086.1| putative S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Helicobacter felis ATCC 49179]
 gi|315132868|emb|CBY83496.1| putative S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Helicobacter felis ATCC 49179]
          Length = 288

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 105/303 (34%), Positives = 162/303 (53%), Gaps = 32/303 (10%)

Query: 20  HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCG 74
           H  VLL++VI    P   A   +++D T G GG+S +  +   +  +I +DRD  A S  
Sbjct: 2   HQSVLLQEVIQAFAPLAQARDPLLIDCTLGLGGHSLTLLQTYPHLRIIGIDRDLEASSIA 61

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGV----DGVVFDLGVSSMQIDCGDRGFSFQKS 130
           ++ +  +  +F+    T++++   + D+G+     GV+ DLGVSS+Q+D   RGF F  S
Sbjct: 62  EQRLALHASRFTYRYGTYAEVIAQLIDEGIWQNCHGVLADLGVSSLQLDNPSRGFGF-AS 120

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM   + + A  V+N  ++ DL ++L   GE + A +IAH IV RR    FQ+  
Sbjct: 121 HTLDMRMDTQASLDAFKVINHYSLYDLEQVLEK-GEVRGAKKIAHLIVNRRHKCLFQSGM 179

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           +L+  + + +   +    HPAT  FQA+R+ VN EI+ L + L    K L+   L I +S
Sbjct: 180 ELAEFLSQHL---RRTHHHPATLVFQAVRMEVNAEIQNL-RALLEYSKQLQNAHLAI-IS 234

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDR VK  F     K   V               ++KK + P ++++  N RSRSA
Sbjct: 235 FHSLEDREVKHTF-KEYAKSYGV--------------CLSKKPITPCKQEIQDNPRSRSA 279

Query: 310 KLR 312
           K+R
Sbjct: 280 KMR 282


>gi|291551135|emb|CBL27397.1| S-adenosyl-methyltransferase MraW [Ruminococcus torques L2-14]
          Length = 359

 Score =  144 bits (362), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 98/314 (31%), Positives = 165/314 (52%), Gaps = 29/314 (9%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPFAVSCG 74
           G H+ +++ +++  L   PG+   DAT G GG++++     K   ++ A D DP   +  
Sbjct: 58  GMHISIMVNEILDFLKIQPGETGFDATLGYGGHTKAMLERLKGEGHIYATDVDPEESAKT 117

Query: 75  QETMRDY---KEQFSLFQATFSQLQDYVPD-KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           ++ + D    ++  S+    F  + +   +  G D ++ DLGVSSMQID   RGFSF+ +
Sbjct: 118 RKRLADQGFGEDILSIRLQNFCTIDEIAKEVGGFDFILADLGVSSMQIDNPKRGFSFKVN 177

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTT 188
           GPLD+R++   GISA++ ++  + ++L  +L    +E     +A AI    R+     TT
Sbjct: 178 GPLDLRLNQEKGISAAERLDNISEEELAGMLYENSDEPYCEELAKAITTEIRKGNRIDTT 237

Query: 189 QDLSSLIQKTVYFSKNNR------IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
             L ++I+KT+ F  NN+           R+FQALRI VNNE E L + +     ALK G
Sbjct: 238 TKLRNVIEKTLDFLPNNKEKKDIIKKTCQRTFQALRIDVNNEFEVLYEFMEKLPGALKPG 297

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G + +++FHS ED+LVKK               + +     ++    + VV P+ ++ A 
Sbjct: 298 GRVAILTFHSGEDKLVKK--------------ALKAGYKEGIYSEYARDVVRPSAQECAQ 343

Query: 303 NRRSRSAKLRAGMR 316
           N R+RS K+R  ++
Sbjct: 344 NGRARSTKMRWAVK 357


>gi|163814931|ref|ZP_02206319.1| hypothetical protein COPEUT_01082 [Coprococcus eutactus ATCC 27759]
 gi|158449870|gb|EDP26865.1| hypothetical protein COPEUT_01082 [Coprococcus eutactus ATCC 27759]
          Length = 348

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 98/313 (31%), Positives = 161/313 (51%), Gaps = 28/313 (8%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCG 74
           G H+ + + +++      PG+  LDAT G GG++    +      ++ ALD DP  +   
Sbjct: 48  GMHISICVNEILDFFQIQPGQQGLDATLGYGGHTMRMLEQLHGEGHMYALDVDPIEIVKT 107

Query: 75  QETMRD--YKEQ-FSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           ++ + D  Y E   ++ Q  F  +     + G  D ++ DLGVSSMQID  DRGF+++  
Sbjct: 108 KQRLADAGYGEDILTIKQTNFRNIDKVAEEAGKFDFILADLGVSSMQIDNPDRGFTYKFD 167

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF-QTT 188
           GPLD+R+    G SA++ + + + ++L  +     +E  A  IA  I+KR ++  + +TT
Sbjct: 168 GPLDLRLDPEKGESAAERLREVSYEELVGMFQENSDEPYAEEIATVIMKRNRTKNYVETT 227

Query: 189 QDLSSLIQKTVYFSKNNRIHPAT-----RSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
             +   I++ + F        A      R FQALRI VN+E E L   L     AL+ GG
Sbjct: 228 IQMKEAIEEALSFVPEKERKEAVKKSCQRCFQALRIDVNSEFEVLYDFLDKLPDALRPGG 287

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            + +++FHS EDRLVK+ F               + A   V+  ++K V+ P+ E+ A N
Sbjct: 288 RVAILTFHSGEDRLVKRAFK--------------AGAKAGVYSEVSKDVIRPSAEECARN 333

Query: 304 RRSRSAKLRAGMR 316
            R+RS K+R  ++
Sbjct: 334 PRARSTKMRWAVK 346


>gi|154148181|ref|YP_001406384.1| S-adenosyl-methyltransferase MraW [Campylobacter hominis ATCC
           BAA-381]
 gi|171769702|sp|A7I1J3|RSMH_CAMHC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|153804190|gb|ABS51197.1| S-adenosyl-methyltransferase MraW [Campylobacter hominis ATCC
           BAA-381]
          Length = 310

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 98/305 (32%), Positives = 160/305 (52%), Gaps = 17/305 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           H+PVL  +V+ +     G +++D T G  G+S +      N+   A D+D  A+   ++ 
Sbjct: 5   HIPVLRNEVVDIFKDLQG-LLIDCTLGFAGHSSAILSANENIRIFACDKDDEALDFSKKR 63

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDK------GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +  +K +  +F++ FS    ++          V G++ D+GVSS+QID  DRGFS  KS 
Sbjct: 64  VEIFKNRIKIFKSGFSNFLPFLETNEILNLSNVVGILADIGVSSLQIDNNDRGFSL-KSD 122

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM   + + A  VVN  +  DL RI     E   A +IA  I   R      + ++
Sbjct: 123 ALDMRMDKNASLDAKFVVNHYSRSDLERIFYEFAELTNAKQIAAKIANYRADKEITSAKE 182

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+++I  + +  KN  I  AT +FQA+RI VN E++EL + L S E +      + +++F
Sbjct: 183 LATIIGTSNF--KNRSISTATLAFQAIRIEVNKELDELNKLLDSIENSAIQNAKIAIITF 240

Query: 251 HSLEDRLVKKFFASRSGKVMA---VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           HSLED++VK  F   +   +           N H A+ + +TKK +  + +++  N R++
Sbjct: 241 HSLEDKIVKNRFKKWAQSCICPPFFERCECGNNH-AIGKILTKKPITASADELKQNSRAK 299

Query: 308 SAKLR 312
           SAKLR
Sbjct: 300 SAKLR 304


>gi|260881478|ref|ZP_05404498.2| S-adenosyl-methyltransferase MraW [Mitsuokella multacida DSM 20544]
 gi|260848533|gb|EEX68540.1| S-adenosyl-methyltransferase MraW [Mitsuokella multacida DSM 20544]
          Length = 369

 Score =  143 bits (361), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 96/321 (29%), Positives = 171/321 (53%), Gaps = 35/321 (10%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCG 74
           G H+P+++++++ +L   PG+   DAT G GG++ +  +      ++   D DP      
Sbjct: 62  GTHIPIMVKEILEVLAIKPGERGFDATLGYGGHTLAMLEKLEGKGHLYGGDVDPIESEKT 121

Query: 75  QETMRDY---KEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           +  +R      + +   Q  F ++     + G  D V+ DLGVSSMQID  +RGF+++  
Sbjct: 122 EARIRAKGFGPDIWERRQMNFCEIDKLAEEVGPFDFVLADLGVSSMQIDNPERGFTYKSD 181

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
           GPLD+R++  +GISA+D + Q + ++L  ++    +E  A  IA  IV+  +  P +TT+
Sbjct: 182 GPLDLRLNPQAGISAADRLRQLDYEELVGMMQENADEPYAEAIARQIVRAEKHRPIRTTR 241

Query: 190 DLSSLIQ---KTVYFSKN--NRI--------HPATRSFQALRIFVNNEIEELAQGLRSAE 236
           +L ++I+   + V+  ++   +I          + R FQALRI VN+E E L + +    
Sbjct: 242 ELYAVIEAALEKVHLPRDAAGKIPDRRDVIRKSSARVFQALRIDVNHEYEVLYEFMEKLP 301

Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296
            AL  GG + +++FHS EDR+VKK F +   +               +++ I ++V+ P+
Sbjct: 302 YALAPGGRVAILTFHSGEDRIVKKAFKAFHQQ--------------GIYRDIAREVIRPS 347

Query: 297 QEDVAFNRRSRSAKLRAGMRT 317
           +E+   N R+ S KLR  +R 
Sbjct: 348 REECYENSRAHSTKLRWAIRA 368


>gi|162447772|ref|YP_001620904.1| S-adenosylmethionine-dependent methyltransferase [Acholeplasma
           laidlawii PG-8A]
 gi|263433290|sp|A9NGP8|RSMH2_ACHLI RecName: Full=Ribosomal RNA small subunit methyltransferase H 2;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase 2;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH 2
 gi|161985879|gb|ABX81528.1| S-adenosylmethionine-dependent methyltransferase [Acholeplasma
           laidlawii PG-8A]
          Length = 344

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 106/314 (33%), Positives = 168/314 (53%), Gaps = 33/314 (10%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCG 74
           G H  +++++++   +   G+V +D T G GG+S+   K      ++  +D+DP  +   
Sbjct: 48  GMHRSIMVDEILHFFDIKLGQVGIDLTTGFGGHSKEILKKLNHTGHLHGIDQDPIELPKT 107

Query: 75  QETMRDY---KEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +  +  Y   K+ F+L Q  F    D +  +G D ++ DLGVSSMQID  DRGF+F++ G
Sbjct: 108 RARLESYGFNKDNFTLHQLNFKDF-DAIDTEGFDFILADLGVSSMQIDNPDRGFTFREEG 166

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR-QSAPFQTTQ 189
           PLD+RM+ + GI A   + + +  ++  +L    +E  A  IA  I K + Q    +TT 
Sbjct: 167 PLDLRMNPNVGIPAYVRLLEMSEIEIEHMLIENADEIYAKEIAKEITKAKIQGRYIRTTL 226

Query: 190 DLSSLI-------QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           DL  +I        K VY  +  +   ++R+FQALRI VN+E E L + L      L  G
Sbjct: 227 DLHQVIASALQKVSKKVYEEELKK--ASSRTFQALRIDVNSEYEVLFEMLDKLPGKLNPG 284

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G + ++SFHS EDRLVKK F                  +  VF S+T+  ++P++E+V  
Sbjct: 285 GKVAILSFHSGEDRLVKKAFKQY--------------LNDGVF-SMTEGPILPSKEEVFN 329

Query: 303 NRRSRSAKLRAGMR 316
           N R+RSAKLR  ++
Sbjct: 330 NPRARSAKLRIAIK 343


>gi|319936250|ref|ZP_08010669.1| S-adenosyl-methyltransferase MraW [Coprobacillus sp. 29_1]
 gi|319808682|gb|EFW05224.1| S-adenosyl-methyltransferase MraW [Coprobacillus sp. 29_1]
          Length = 346

 Score =  142 bits (359), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 100/315 (31%), Positives = 167/315 (53%), Gaps = 30/315 (9%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73
           +G H+ +++ +++  L+   G++ LD T G GG++    +      ++ ALD DP     
Sbjct: 46  VGMHLSIMVNEILEFLDIQEGQIGLDCTLGYGGHTLKMLECLNHTGHMYALDIDPIESVK 105

Query: 74  GQETM--RDYKEQF-SLFQATFSQLQDYVPDK-GV-DGVVFDLGVSSMQIDCGDRGFSFQ 128
            +E +  + Y E+  ++ Q  F  + DYV  + G+ D V+ DLGVSSMQID  +RGFS++
Sbjct: 106 TKERLFNKGYGEELLTIKQCNFKDI-DYVSKEVGLFDFVLADLGVSSMQIDNPERGFSYK 164

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF-Q 186
           K GPLD+R++   GI AS  + + N   L ++     +E  A  IA  I    ++    +
Sbjct: 165 KEGPLDLRLNPEKGIPASQKLQELNKTQLEQLFIDNSDEPYAKEIAKNIDSFLKTGRLIE 224

Query: 187 TTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
           TT DL  +I+K++ F      K +    A R FQALRI VNNE + L + +      LK+
Sbjct: 225 TTTDLYKIIEKSLSFIPVNERKESIKKSAARVFQALRIEVNNEFDVLIEFMEKLPNILKS 284

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           GG + +++FHS EDR+VKK F                  +  ++    + V+ P++E+  
Sbjct: 285 GGRVAILTFHSGEDRIVKKAFKEMK--------------NLGIYSDAARNVIRPSKEECH 330

Query: 302 FNRRSRSAKLRAGMR 316
            N R++S K+R  ++
Sbjct: 331 MNSRAKSTKMRWAIK 345


>gi|254671182|emb|CBA08306.1| S-adenosyl-methyltransferase [Neisseria meningitidis alpha153]
          Length = 249

 Score =  142 bits (359), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 85/209 (40%), Positives = 123/209 (58%), Gaps = 3/209 (1%)

Query: 111 LGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQA 169
            G+SS QID G RGFSF+   PLDMRM  + G+SA++ +  A+ +DL  ++   GEE+ +
Sbjct: 26  WGISSPQIDDGSRGFSFRFDAPLDMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFS 85

Query: 170 SRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELA 229
            +IA AIV +R  +P  TT+ L+ ++ + V   +  +  PATR+FQA+RIF+N E+EE+ 
Sbjct: 86  RQIARAIVAQRAESPIDTTRKLAQIVAQNVRTRERGQ-DPATRTFQAVRIFINRELEEVG 144

Query: 230 QGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSI 288
             L      LK GG L V++FHSLEDR+VK+F    S      R      A  P     I
Sbjct: 145 AVLPQVMCRLKEGGRLAVIAFHSLEDRIVKQFVKKYSQHAPLPRWAAVREADLPEPPLKI 204

Query: 289 TKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
             + + P + ++A N R+RSA LR   RT
Sbjct: 205 VGRALKPGEAEIAANPRARSAVLRVAERT 233


>gi|226322767|ref|ZP_03798285.1| hypothetical protein COPCOM_00539 [Coprococcus comes ATCC 27758]
 gi|225208748|gb|EEG91102.1| hypothetical protein COPCOM_00539 [Coprococcus comes ATCC 27758]
          Length = 356

 Score =  142 bits (358), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 101/317 (31%), Positives = 166/317 (52%), Gaps = 35/317 (11%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF--CKMG-SNVIALDRDPFAVSCG 74
           G H+ +++++++  L   PG+V  DAT G GG++++   C  G  ++ A D DP   +  
Sbjct: 55  GMHISIMVQEILDFLKIQPGEVGFDATLGYGGHTKAMLQCLEGKGHIYATDVDPEESA-- 112

Query: 75  QETMRDYKEQ------FSLFQATFSQLQDYVPD-KGVDGVVFDLGVSSMQIDCGDRGFSF 127
            +T +  +EQ       ++    F  + +   +  G D ++ DLGVSSMQID   RGFSF
Sbjct: 113 -KTKKRLEEQGFGEDILTIRLQNFCTIDEIAKEVGGFDFILADLGVSSMQIDNPKRGFSF 171

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPF 185
           +  GPLD+R++   GISA++ ++  + ++L  +L    +E     +A AI +  R+    
Sbjct: 172 KVDGPLDLRLNQEKGISAAERLDTISREELAGMLYENSDEPYCEELAKAITEEIRKGHRI 231

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHP------ATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
            TT  L  +I++T+ F   N+           R+FQALRI VN+E E L + +     AL
Sbjct: 232 DTTTKLRQVIEQTLSFLPENKEKKDIIRKTCQRTFQALRIDVNHEFEVLYEFMEKLPGAL 291

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
           K GG + +++FHS ED+LVKK               + +     V+    K VV P+ E+
Sbjct: 292 KPGGRVAILTFHSGEDKLVKK--------------ALKAGYREGVYSEYAKDVVRPSAEE 337

Query: 300 VAFNRRSRSAKLRAGMR 316
            A N R+RS K+R  ++
Sbjct: 338 CAQNGRARSTKMRWAVK 354


>gi|54020186|ref|YP_115916.1| hypothetical protein mhp406 [Mycoplasma hyopneumoniae 232]
 gi|76363868|sp|Q600P9|RSMH_MYCH2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|53987359|gb|AAV27560.1| conserved hypothetical protein [Mycoplasma hyopneumoniae 232]
          Length = 296

 Score =  142 bits (358), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 111/304 (36%), Positives = 160/304 (52%), Gaps = 26/304 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           HVPVLLE++I  L   P    +D T G GG+S +  +  SN  ++  D+D  A+   +  
Sbjct: 2   HVPVLLEELILALEINPKGFYVDLTLGRGGHSLAILEKISNGKLVVFDKDQDALDQTRPK 61

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +   K+   +  + FS+   Y+ + G   VDG + DLGVSS QID   RGFS+ K G LD
Sbjct: 62  LLALKQNIEIIWSDFSRFDFYLENLGIQFVDGFIIDLGVSSPQIDDPARGFSYSKDGNLD 121

Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM  S  +SA  V+N+   + L  I    G+   A  IA AI+  R   P +TT +L +
Sbjct: 122 MRMDKSQKLSAFIVLNEYPYEKLVEIFFKYGQIPYAREIARAIINSR---PLKTTFELVN 178

Query: 194 LIQKTV---YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L++K +      K N I      FQA+RI VNNE++ L + L    K LK G  + +++F
Sbjct: 179 LVKKVIPALVLVKKNFIK---NVFQAVRIEVNNELDSLQKLLEKLPKFLKQGSKVAIITF 235

Query: 251 HSLEDRLVKKFFAS--RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+VKK F    R  K+   +  +P           + KV  P   ++  N R++S
Sbjct: 236 HSLEDRIVKKAFLDLIRKDKLEFFQKGLP---------KFSMKVFRPKANELKSNPRAKS 286

Query: 309 AKLR 312
           AKLR
Sbjct: 287 AKLR 290


>gi|167932993|ref|ZP_02520080.1| S-adenosyl-methyltransferase MraW [candidate division TM7
           single-cell isolate TM7b]
          Length = 242

 Score =  142 bits (358), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 94/211 (44%), Positives = 124/211 (58%), Gaps = 19/211 (9%)

Query: 105 DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGIL 163
           D ++ DLGVSS Q+D GDRGFSF   GPLDMRM      SA+D+VN    + L  IL   
Sbjct: 45  DVIMVDLGVSSPQLDNGDRGFSFMYDGPLDMRMDQRQKFSAADIVNSYPKQKLIEILVRY 104

Query: 164 GEEKQ--ASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFV 221
           GEE+   A RIA  I KRR   PF  T +L+ +I + ++     +IHPATR+FQALRI V
Sbjct: 105 GEERLSFAKRIADEIYKRR---PFTKTSELAKMIVE-IHRGGWQKIHPATRTFQALRIEV 160

Query: 222 NNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH 281
           N E+ ++   L    + L +GG + ++SFHSLEDRLVK+FF   SG            + 
Sbjct: 161 NQELAQIESLLPLLLQLLNSGGRVGIISFHSLEDRLVKRFFKDNSGL-----------SF 209

Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
            +  + + KK +     D A+N RSRSAKLR
Sbjct: 210 ESELELLNKKPLDGATYD-AYNPRSRSAKLR 239


>gi|325263876|ref|ZP_08130609.1| S-adenosyl-methyltransferase MraW [Clostridium sp. D5]
 gi|324030914|gb|EGB92196.1| S-adenosyl-methyltransferase MraW [Clostridium sp. D5]
          Length = 357

 Score =  142 bits (358), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 99/313 (31%), Positives = 158/313 (50%), Gaps = 28/313 (8%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCG 74
           G H+ + +++++  L   PG+  LDAT G GG++    K   N   + ALD DP      
Sbjct: 58  GMHISICVQEILEFLQIKPGQKGLDATLGYGGHTLEMLKCLENQGHIYALDVDPIESQKT 117

Query: 75  QETMRDY---KEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           +E + +     E  ++    F+ +     + G  D ++ DLGVSSMQID  +RGFS++  
Sbjct: 118 KERLSNLGYGPEILTVRLLNFANIDQIAAEAGPFDFILADLGVSSMQIDNPERGFSYKTE 177

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV-KRRQSAPFQTT 188
           GPLD+RM+  +GISA++ +     ++L  +L    +E  A  IA A+V + ++    +TT
Sbjct: 178 GPLDLRMNPEAGISAAERLGTITSEELQGMLVENADEPYAEEIADAVVLETKKGKKIETT 237

Query: 189 QDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
           + L  +I+  + F      K        R+FQALRI +NNE E L   L      L  GG
Sbjct: 238 RQLREVIESALSFLPAAERKEAVKKSCQRTFQALRIDINNEFEVLYAFLDKLPDVLAPGG 297

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
              +++FHS EDRLVKK F     +               ++   +K V+ P+ E+   N
Sbjct: 298 RAAILTFHSGEDRLVKKSFKRLYNE--------------GIYSDYSKDVIRPSAEECIRN 343

Query: 304 RRSRSAKLRAGMR 316
            R+RS K+R  ++
Sbjct: 344 SRARSTKMRWAVK 356


>gi|240145398|ref|ZP_04743999.1| S-adenosyl-methyltransferase MraW [Roseburia intestinalis L1-82]
 gi|257202523|gb|EEV00808.1| S-adenosyl-methyltransferase MraW [Roseburia intestinalis L1-82]
          Length = 350

 Score =  142 bits (357), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 99/313 (31%), Positives = 164/313 (52%), Gaps = 28/313 (8%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF--CKMG-SNVIALDRDPFAVSCG 74
           G H+ +++++++  L   PG+   DAT G GG++++   C  G  ++ A D DP   +  
Sbjct: 51  GMHISIMVQEILDTLKIQPGETGFDATLGYGGHTKAMLACLNGQGHIYATDVDPEESAKT 110

Query: 75  QETMRD--YKEQ-FSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           ++ + +  Y E   ++    F  + +   + G  D ++ DLGVSSMQID   RGFSF+  
Sbjct: 111 KKRLEELGYGEDILTIRLQNFCTIDEIAKEAGGFDFILADLGVSSMQIDNPKRGFSFKVD 170

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTT 188
           GPLD+R++  +GISA++ ++    ++L  +L    +E     +A AI    R+ +   TT
Sbjct: 171 GPLDLRLNQEAGISAAERLDTITREELAGMLYENSDEPYCEELAKAITDEIRKGSRIDTT 230

Query: 189 QDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
             L  +I+KT+ F      K+       R+FQALRI VN E E L + +     ALK GG
Sbjct: 231 TKLREVIEKTLDFLPEKEKKDTIKKTCQRTFQALRIDVNREFEVLYEFMEKLPDALKPGG 290

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            + +++FHS ED+LVKK               +       ++   +K VV P+ ++ A N
Sbjct: 291 RVAILTFHSGEDKLVKK--------------ALKEGCRAGIYADYSKDVVRPSAQECAQN 336

Query: 304 RRSRSAKLRAGMR 316
            R+RS K+R  +R
Sbjct: 337 GRARSTKMRWAVR 349


>gi|315606646|ref|ZP_07881657.1| S-adenosyl-methyltransferase MraW [Prevotella buccae ATCC 33574]
 gi|315251656|gb|EFU31634.1| S-adenosyl-methyltransferase MraW [Prevotella buccae ATCC 33574]
          Length = 380

 Score =  142 bits (357), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 88/232 (37%), Positives = 130/232 (56%), Gaps = 8/232 (3%)

Query: 85  FSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-S 140
           F+  ++ F  L++++   GVD   G++ DLGVSS   D   RGFSF+   PLDMRM+   
Sbjct: 148 FTFVRSNFRYLKNWMRYYGVDHIDGLLADLGVSSHHFDDETRGFSFRFDAPLDMRMNKRG 207

Query: 141 GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVY 200
           G +A+D+VN+ +   L  +  + GE K + RIA A+VK R     +TTQD    ++    
Sbjct: 208 GRTAADIVNEYDENRLADVFYLYGELKNSRRIAAALVKARAQGRIETTQDFVQAVEPL-- 265

Query: 201 FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKK 260
           F +        + FQALRI VNNE+  L + L +A + LK GG L V+++HSLEDR+VK 
Sbjct: 266 FRREREKKDMAKLFQALRIEVNNEMTALKEMLLAATELLKPGGRLSVITYHSLEDRIVKN 325

Query: 261 FFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
              + + +    +        P  F+ +  KV+VP  ++   N RSRSAKLR
Sbjct: 326 VMKAGNPEGKVAQDFFGRIETP--FRPVNNKVIVPEDDEQQRNPRSRSAKLR 375



 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 3/51 (5%)

Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRD 67
          HVPVLL++ +  LN  PG + +D TFG GG+SR        G+++ + D+D
Sbjct: 9  HVPVLLKESVDGLNIRPGGIYVDVTFGGGGHSREILSRLTGGAHLYSFDQD 59


>gi|288925513|ref|ZP_06419446.1| S-adenosyl-methyltransferase MraW [Prevotella buccae D17]
 gi|288337729|gb|EFC76082.1| S-adenosyl-methyltransferase MraW [Prevotella buccae D17]
          Length = 393

 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 88/232 (37%), Positives = 130/232 (56%), Gaps = 8/232 (3%)

Query: 85  FSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-S 140
           F+  ++ F  L++++   GVD   G++ DLGVSS   D   RGFSF+   PLDMRM+   
Sbjct: 161 FTFVRSNFRYLKNWMRYYGVDHIDGLLADLGVSSHHFDDETRGFSFRFDAPLDMRMNKRG 220

Query: 141 GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVY 200
           G +A+D+VN+ +   L  +  + GE K + RIA A+VK R     +TTQD    ++    
Sbjct: 221 GRTAADIVNEYDENRLADVFYLYGELKNSRRIAAALVKARAQGRIETTQDFVQAVEPL-- 278

Query: 201 FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKK 260
           F +        + FQALRI VNNE+  L + L +A + LK GG L V+++HSLEDR+VK 
Sbjct: 279 FRREREKKDLAKLFQALRIEVNNEMTALKEMLLAATELLKPGGRLSVITYHSLEDRIVKN 338

Query: 261 FFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
              + + +    +        P  F+ +  KV+VP  ++   N RSRSAKLR
Sbjct: 339 VMKAGNPEGKVAQDFFGRIETP--FRPVNNKVIVPEDDEQQRNPRSRSAKLR 388



 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 3/50 (6%)

Query: 21 VPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRD 67
          +PVLL++ +  LN  PG + +D TFG GG+SR        G+++ + D+D
Sbjct: 1  MPVLLKESVDGLNIRPGGIYVDVTFGGGGHSREILSRLTGGAHLYSFDQD 50


>gi|94264627|ref|ZP_01288410.1| methyltransferase [delta proteobacterium MLMS-1]
 gi|93454922|gb|EAT05163.1| methyltransferase [delta proteobacterium MLMS-1]
          Length = 301

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 106/314 (33%), Positives = 156/314 (49%), Gaps = 35/314 (11%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M +AIH       PVLLE+V+  L PA G   +D   G GG++ +          ++  D
Sbjct: 1   MEAAIHQ------PVLLEEVLHWLAPAAGGTYVDGNLGLGGHAAAILAASAPDGRLLGFD 54

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSM---QIDCGD 122
            D  A+   +  +  +  +    +  FS+L+  + +  +  +   L    +   Q+  G 
Sbjct: 55  WDQQALEQARRKLAPWGSRVITVRRNFSELEAVLAELAISKIDGLLLDLGLSSLQLAQGG 114

Query: 123 RGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSFQ   PLDMRM    G SA++++++ +  +L  I    GEE+QA  IA  +V  RQ
Sbjct: 115 RGFSFQADEPLDMRMDQRGGESAAEMLHRLSAAELADIFYYYGEERQARPIAARVVAERQ 174

Query: 182 SAPFQTTQDLSSLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
                ++  L+ L+ + V   F   N IH ATR FQALRI VN E+E L + L  A   L
Sbjct: 175 RGMISSSGQLAELVAQAVPRRFHPRN-IHVATRVFQALRIAVNRELENLEKILAVAPPLL 233

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFAS-RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
            AG    V+SFHSLEDRLVK+ FA  R  +V+                  T K V   ++
Sbjct: 234 TAGARFCVISFHSLEDRLVKQAFAGDRRLRVL------------------TGKPVTAGEQ 275

Query: 299 DVAFNRRSRSAKLR 312
           ++  N R+RSA+LR
Sbjct: 276 ELGSNPRARSARLR 289


>gi|310658142|ref|YP_003935863.1| methyltransferase [Clostridium sticklandii DSM 519]
 gi|308824920|emb|CBH20958.1| Methyltransferase [Clostridium sticklandii]
          Length = 348

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 101/315 (32%), Positives = 159/315 (50%), Gaps = 32/315 (10%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFA---V 71
           G H+ + + +++      PG++  DAT G GG++    K   +   + A D DP      
Sbjct: 49  GMHISIAVNEILEFFQIKPGQIGFDATLGYGGHTLEMLKCLEHQGCIFATDVDPIESQKT 108

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
               E++   ++   +    FS++     + G  D ++ DLGVSSMQID  DRGF++++ 
Sbjct: 109 KARLESLGYGEDMLKIRNMNFSEIDKISKEAGKFDFILADLGVSSMQIDNPDRGFTYKRE 168

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTT 188
           GPLD+R++   GISA++ + + N  ++  +L    +E  A  I+ AI+KR  +    +TT
Sbjct: 169 GPLDLRLNPEKGISAAERLKEMNQYEIEGMLLENSDEPHAEIISKAIIKRFEEGEKIETT 228

Query: 189 QDLSSLIQKTVYF--SKNNRIH---PATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
             L  LI+ T+ F  SK+          R FQALRI VN E E L   L      L   G
Sbjct: 229 SQLRDLIEDTLSFIPSKDREQEIKKTCQRVFQALRIDVNQEFEVLYDFLEKLPAVLAPNG 288

Query: 244 LLIVVSFHSLEDRLVKKFFAS--RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
            ++++SFHS EDRLVKK F +  R G                ++  I+  V+ P+ E+  
Sbjct: 289 KVLIMSFHSGEDRLVKKSFKNYYREG----------------IYSEISTDVIRPSAEECN 332

Query: 302 FNRRSRSAKLRAGMR 316
            N R+RS K+R  +R
Sbjct: 333 RNPRARSTKIRFAIR 347


>gi|331091351|ref|ZP_08340191.1| ribosomal RNA small subunit methyltransferase H 1 [Lachnospiraceae
           bacterium 2_1_46FAA]
 gi|330404512|gb|EGG84056.1| ribosomal RNA small subunit methyltransferase H 1 [Lachnospiraceae
           bacterium 2_1_46FAA]
          Length = 349

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 98/316 (31%), Positives = 164/316 (51%), Gaps = 32/316 (10%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF--CKMGS-NVIALDRDPFAVSC 73
           +G H+ + +++++  L   PG+  LDAT G GG++     C  G  ++ ALD D    + 
Sbjct: 49  VGMHISICVKEILDFLQIQPGQRGLDATLGYGGHTLEMLKCLKGEGHLYALDVDTVESAK 108

Query: 74  GQETMRD--YKEQ-FSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQK 129
            +E ++   Y E+  ++    F  +     + G  D V+ DLGVSSMQID  +RGF+++K
Sbjct: 109 TKERLQKLGYGEEILTIKNINFRDIDKVCEEAGKFDFVLADLGVSSMQIDNPERGFTYKK 168

Query: 130 SGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI-VKRRQSAPFQT 187
            GPLD+R++   G+SA++ + +  +++L  +     +E  A  IA  I  K R+     T
Sbjct: 169 EGPLDLRLNQKKGVSAAERLKEVTMEELEGMFVENADEPYAHEIAEKIFAKLRRGEAIDT 228

Query: 188 TQDLSSLIQKTVYFSKNNRIHPAT-----RSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           T  L  +I++ + F        A      R+FQALRI VN+E E L + +      LK G
Sbjct: 229 TTKLQQIIEEALKFIPEKERKEAVKKSCQRTFQALRIDVNSEFEVLYEFMEKLPNVLKEG 288

Query: 243 GLLIVVSFHSLEDRLVKKFFAS--RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300
           G + +++FHS EDR+VK+ F    R+G                V+  I   V+ P+ E+ 
Sbjct: 289 GRVAILTFHSGEDRIVKRAFKELKRAG----------------VYSDIANDVIRPSAEEC 332

Query: 301 AFNRRSRSAKLRAGMR 316
            +N R++S K+R  ++
Sbjct: 333 NYNSRAKSTKMRWAIK 348


>gi|68163389|ref|NP_001020152.1| hypothetical protein LOC295985 [Rattus norvegicus]
 gi|60551447|gb|AAH91215.1| Similar to RIKEN cDNA 0610027B03 [Rattus norvegicus]
          Length = 286

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 79/194 (40%), Positives = 113/194 (58%), Gaps = 11/194 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCGQET 77
           H+PV++++V+  L P  G+V LD TFG+GG+S++  +   +V   ALDRDP A +  +  
Sbjct: 72  HIPVMVDEVVQCLTPQKGQVFLDMTFGSGGHSKAILQKEPDVTVYALDRDPVAFTLAERL 131

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              Y  Q       FSQ +  +   GV     DGV+ DLG SSMQ+D  +RGFS +K GP
Sbjct: 132 SEMYPTQIHAMLGQFSQAETLLMKAGVQPGTVDGVLLDLGCSSMQLDAPERGFSLRKDGP 191

Query: 133 LDMRMSCSGI----SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           LDMRM         +A+DVVN  + + L  IL   GEEK A +IA AI++ R + P   T
Sbjct: 192 LDMRMDGDRYPDMPTAADVVNALDQQALASILRAYGEEKHAKKIASAIIQARSTYPISRT 251

Query: 189 QDLSSLIQKTVYFS 202
           Q L+S++  T++ S
Sbjct: 252 QQLASIVAGTLFKS 265


>gi|145627903|ref|ZP_01783704.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae 22.1-21]
 gi|144979678|gb|EDJ89337.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae 22.1-21]
          Length = 223

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 89/216 (41%), Positives = 128/216 (59%), Gaps = 20/216 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQE 76
           H+ VLL + +  L      + +D TFG GG+SR    ++ SN  +IA+DRDP A++   E
Sbjct: 12  HITVLLHEAVNGLALKENGIYIDGTFGRGGHSRFILSQLSSNGRLIAVDRDPRAIA---E 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
             +    +F +   +FS + + + DK      ++G++ DLGVSS Q+D  +RGFSF K G
Sbjct: 69  AHKIQDSRFQIEHNSFSHIPE-ICDKLNLVGKINGILLDLGVSSPQLDEAERGFSFMKDG 127

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP------ 184
           PLDMRM  + G+SA + + Q +++DLT +L   GEE+ A RIA AIV   +SA       
Sbjct: 128 PLDMRMDTTQGLSAEEWLKQVSIEDLTWVLKTFGEERFAKRIATAIVDFNKSAVKNGTEF 187

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIF 220
              T  L+ LI + V F K+   HPATRSFQA+RIF
Sbjct: 188 LSRTSQLAELISQAVPF-KDKHKHPATRSFQAIRIF 222


>gi|326792370|ref|YP_004310191.1| ribosomal RNA small subunit methyltransferase H [Clostridium
           lentocellum DSM 5427]
 gi|326543134|gb|ADZ84993.1| Ribosomal RNA small subunit methyltransferase H [Clostridium
           lentocellum DSM 5427]
          Length = 349

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 105/315 (33%), Positives = 163/315 (51%), Gaps = 32/315 (10%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCG 74
           G H+ + +++++  L   PG+  LDAT G GG++    K      ++ ALD DP  +   
Sbjct: 50  GMHISICVKEILEFLQIKPGQKGLDATLGYGGHTLEMLKCLEAKGHMYALDVDPIEIVKT 109

Query: 75  QETMRD--YKEQ-FSLFQATFSQLQDYVPDKGV-DGVVFDLGVSSMQIDCGDRGFSFQKS 130
           ++ + D  Y E+  ++ Q  F  +     + G+ D ++ DLGVSSMQID  DRGFSF+  
Sbjct: 110 KKRLEDLGYGEEILTIKQLNFRDIDQVAAENGLFDFMLADLGVSSMQIDNPDRGFSFKYE 169

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTT 188
           GPLD+R+    GISA++ +     K+L  +L    +E  A  I+ AI+ + R+     TT
Sbjct: 170 GPLDLRLDPEKGISAAERLKDMTQKELEGMLIENSDEPYAKEISEAIISKIRKKDYISTT 229

Query: 189 QDLSSLIQKTVYFSKNNRIHPAT-----RSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
             L  +I + + F   ++   A      R+FQALRI VN+E E L + L      L  GG
Sbjct: 230 TKLQQVIGEALEFIPEDKRKEAIKKSCQRTFQALRIDVNSEFEVLEEFLEKLPNVLAKGG 289

Query: 244 LLIVVSFHSLEDRLVKKFFAS--RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
            + +++FHS EDRLVKK F    R G                V+  I  +V+ P+ E+  
Sbjct: 290 RVAILTFHSGEDRLVKKSFKRLLREG----------------VYSEIATEVIRPSAEECN 333

Query: 302 FNRRSRSAKLRAGMR 316
            N R+RS K+R  ++
Sbjct: 334 MNGRARSTKMRWAIK 348


>gi|94266846|ref|ZP_01290506.1| methyltransferase [delta proteobacterium MLMS-1]
 gi|93452476|gb|EAT03075.1| methyltransferase [delta proteobacterium MLMS-1]
          Length = 301

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 106/314 (33%), Positives = 155/314 (49%), Gaps = 35/314 (11%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M +AIH       PVLLE+V+  L PA G   +D   G GG++ +          ++  D
Sbjct: 1   MEAAIHQ------PVLLEEVLHWLAPAAGGTYVDGNLGLGGHAAAILAASAPDGRLLGFD 54

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSM---QIDCGD 122
            D  A+   +  +  +  +    +  FS+L+  + +  +  +   L    +   Q+  G 
Sbjct: 55  WDQQALEQARRKLAPWGSRVITVRRNFSELEAVLAELAISKIDGLLLDLGLSSLQLAQGG 114

Query: 123 RGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSFQ   PLDMRM   G  SA++++++ +  +L  I    GEE+QA  IA  +V  RQ
Sbjct: 115 RGFSFQADEPLDMRMDQRGKESAAELLHRLSAAELADIFYYYGEERQARPIAARVVAERQ 174

Query: 182 SAPFQTTQDLSSLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
                ++  L+ L+ + V   F   N IH ATR FQALRI VN E+E L + L  A   L
Sbjct: 175 RGMISSSGQLAELVAQAVPRRFHPRN-IHVATRVFQALRIAVNRELENLEKILAVAPPLL 233

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFAS-RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
            AG    V+SFHSLEDRLVK+ FA  R  +V+                  T K V    +
Sbjct: 234 TAGARFCVISFHSLEDRLVKQAFAGDRRLRVL------------------TGKPVTAGDQ 275

Query: 299 DVAFNRRSRSAKLR 312
           ++  N R+RSA+LR
Sbjct: 276 ELGSNPRARSARLR 289


>gi|291534831|emb|CBL07943.1| S-adenosyl-methyltransferase MraW [Roseburia intestinalis M50/1]
          Length = 350

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 99/313 (31%), Positives = 163/313 (52%), Gaps = 28/313 (8%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF--CKMG-SNVIALDRDPFAVSCG 74
           G H+ +++++++  L   PG+   DAT G GG++++   C  G  ++ A D DP   +  
Sbjct: 51  GMHISIMVQEILDTLKIQPGETGFDATLGYGGHTKAMLACLNGQGHIYATDVDPEESAKT 110

Query: 75  QETMRD--YKEQ-FSLFQATFSQLQDYVPD-KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           ++ + +  Y E   ++    F  + +   +  G D ++ DLGVSSMQID   RGFSF+  
Sbjct: 111 KKRLEELGYGEDILTIRLQNFCTIDEIAKEVGGFDFILADLGVSSMQIDNPKRGFSFKVD 170

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTT 188
           GPLD+R++  +GISA++ ++    ++L  +L    +E     +A AI    R+     TT
Sbjct: 171 GPLDLRLNQEAGISAAERLDTITREELAGMLYENSDEPYCEELAKAITDEIRKGNRIDTT 230

Query: 189 QDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
             L  +I+KT+ F      K+       R+FQALRI VN E E L + +     ALK GG
Sbjct: 231 TKLREVIEKTLDFLPEKEKKDTIKKTCQRTFQALRIDVNREFEVLYEFMEKLPDALKPGG 290

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            + +++FHS ED+LVKK               +       ++   +K VV P+ ++ A N
Sbjct: 291 RVAILTFHSGEDKLVKK--------------ALKEGYRAGIYADYSKDVVRPSAQECAQN 336

Query: 304 RRSRSAKLRAGMR 316
            R+RS K+R  +R
Sbjct: 337 GRARSTKMRWAVR 349


>gi|125580743|gb|EAZ21674.1| hypothetical protein OsJ_05305 [Oryza sativa Japonica Group]
          Length = 439

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 103/294 (35%), Positives = 139/294 (47%), Gaps = 43/294 (14%)

Query: 62  IALDRDPFAVSCG---------------------QETMRDYK--EQFSLFQATFSQLQDY 98
           I +D DP A+  G                     Q T+R Y   + F   +     + + 
Sbjct: 141 IGMDVDPSALEIGRSRIEAFLANRETNGDDEDASQGTLRAYTHAKNFKYIKHVLGSVDEN 200

Query: 99  --VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKD 155
             V   GVDG++ DLG+SSMQ++  DRGFS  + GPLDMRM     + A D++N     +
Sbjct: 201 IAVGTSGVDGILIDLGMSSMQVNRSDRGFSVLQDGPLDMRMDPKATLKAEDILNSWPDLE 260

Query: 156 LTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS--KNNRIHPATRS 213
           + RIL   GEE     +   IVK R      +T +L  LIQ+T   S  +   I  ATR 
Sbjct: 261 VGRILRDYGEESNWQSLQKRIVKARAMGGLHSTGELVKLIQRTCTSSGGRQGWIKTATRV 320

Query: 214 FQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF-------ASRS 266
           FQALRI VN+E+  L   L +    L   G L V+SFHSLEDR+VK+ F           
Sbjct: 321 FQALRIAVNDELRTLEDALHACFDCLATDGRLAVISFHSLEDRIVKQTFLELIHEDEIDD 380

Query: 267 GKVMAVRHMIPSNAHPAVFQSI--------TKKVVVPTQEDVAFNRRSRSAKLR 312
            +   V   I S   P   Q +        TK+ + P+QE+   N+R RSAKLR
Sbjct: 381 DEDDLVSADIDSEDEPWFKQRVQGKNGTILTKRPISPSQEEEELNQRCRSAKLR 434


>gi|291523548|emb|CBK81841.1| S-adenosyl-methyltransferase MraW [Coprococcus catus GD/7]
          Length = 352

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 99/314 (31%), Positives = 158/314 (50%), Gaps = 28/314 (8%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF--CKMGS-NVIALDRDPFAVSCG 74
           G H+ +++++++  L   PG+  LDAT G GG++ +   C  G  ++ ALD D   ++  
Sbjct: 53  GMHISIMVQEILDFLQIQPGQRGLDATLGYGGHTSAMLRCLNGEGHLTALDVDAIEMAKT 112

Query: 75  QETMRDY---KEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           +E +R+     +  ++ +  F+ + +     G  D ++ DLGVSSMQID  DRGFS++  
Sbjct: 113 EERLRNQGFGPDILTVRKINFANIDEVAEKDGKFDFILADLGVSSMQIDNPDRGFSYKYD 172

Query: 131 GPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTT 188
           GPLD+R+    G  AS+ +      +   +L    +E  A+ IA  +++  ++  P  TT
Sbjct: 173 GPLDLRLDQTKGEPASERLKHVTRDEFEGMLIENSDEPYAAEIASVVMQELKKGHPVDTT 232

Query: 189 QDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
             L  LI+K +        K        R+FQALRI VN+E E L   L+     L  GG
Sbjct: 233 SKLRELIEKALVRVPAADRKEAVKKSCARTFQALRIDVNSEFEVLEAFLQKLPDVLNPGG 292

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            + V++FHS EDRLVKK F                N    ++    K V+ P+ E+   N
Sbjct: 293 RVAVLTFHSGEDRLVKKSFK--------------ENVKAGIYSEAAKDVIRPSAEECRCN 338

Query: 304 RRSRSAKLRAGMRT 317
            R+ S KLR  +R+
Sbjct: 339 SRAHSTKLRWAVRS 352


>gi|225028745|ref|ZP_03717937.1| hypothetical protein EUBHAL_03024 [Eubacterium hallii DSM 3353]
 gi|224953936|gb|EEG35145.1| hypothetical protein EUBHAL_03024 [Eubacterium hallii DSM 3353]
          Length = 352

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 100/314 (31%), Positives = 165/314 (52%), Gaps = 29/314 (9%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF--CKMGS-NVIALDRDPFAVSCG 74
           G H+ + +++++  L   PG+  LD T G GG++R    C  G  ++  LD DP  +   
Sbjct: 53  GMHISICVQEILDFLQIQPGQKGLDCTLGYGGHTRKMLECLQGEGHIYGLDVDPIEIVKT 112

Query: 75  QETMRD--YKEQ-FSLFQATFSQLQDYVPDKGV-DGVVFDLGVSSMQIDCGDRGFSFQKS 130
            + +R   Y E   ++ Q  F  +     + G+ D V+ DLGVSSMQID  +RGFS++  
Sbjct: 113 TDRLRKAGYGEDILTIIQQNFRNIDLVAEEHGLFDFVLADLGVSSMQIDNPERGFSYKVE 172

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTT 188
           GPLD+R++   GISA++ + +    ++  +L    +E  A +IA  I+K  RQ     TT
Sbjct: 173 GPLDLRLNPDKGISAAERLRELTRDEIEGMLRENADEPYAEQIAKEIMKTFRQGEQIDTT 232

Query: 189 QDLSSLIQKTVYFSKNNRIHPAT------RSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
             L  +I++ + F  +++    T      R+FQALRI VN+E E L + L      L  G
Sbjct: 233 GQLKEVIERALVFLPDDKEKKDTIKKTCQRTFQALRIDVNSEFEVLEEFLEKLPHILAPG 292

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G + +++FHS EDRLVKK +  +  +               ++  + K V+ P++E+   
Sbjct: 293 GRVAILTFHSGEDRLVKKIWKRQQKE--------------GLWSEVAKNVIRPSKEECHR 338

Query: 303 NRRSRSAKLRAGMR 316
           N R+RS K+R  ++
Sbjct: 339 NGRARSTKMRWAIK 352


>gi|240047424|ref|YP_002960812.1| S-adenosyl-L-methionine-dependent methyltransf [Mycoplasma
           conjunctivae HRC/581]
 gi|263458177|sp|C5J697|RSMH_MYCCR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|239984996|emb|CAT04989.1| S-adenosyl-L-methionine-dependent methyltransf [Mycoplasma
           conjunctivae]
          Length = 296

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 103/303 (33%), Positives = 157/303 (51%), Gaps = 24/303 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSNV-IALDRDPFAVSCGQET 77
           H+PVL++ +I  LN     + +D T G GG++ +   K+ + + I  D+D  A+   +E 
Sbjct: 2   HIPVLIDSLIENLNIREDGIYVDLTLGRGGHAAAILSKLTTGLLIVFDKDEKAIEESKER 61

Query: 78  MRDYK-------EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           +           E F  F     + Q Y     VDG + DLGVSS QID G+RGFS+ K+
Sbjct: 62  LLAISKNVIFIWEDFRNFAVELEKRQIY----KVDGFIMDLGVSSPQIDQGERGFSYTKN 117

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM+ +  + A  VVN  N   LT++L   GE K A  +  AI+  R   P  TT 
Sbjct: 118 ARLDMRMNQNQELDAHHVVNNYNQDLLTKVLQNYGELKNARSLTKAIIDSR---PINTTF 174

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           +L +LI+ +   +   + +     FQA+RI VN+E+  L   L      LK    + +++
Sbjct: 175 ELVNLIRSSSPAALLRKKNIVKNVFQAIRIEVNDELGALEAFLSLFISYLKQDSQVAIIT 234

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDR+VK  F  +S  + +  H+    A     Q  + K + P+  ++  N+RS+SA
Sbjct: 235 FHSLEDRIVKMKF--KSLLISSKTHLFDPRA-----QQFSVKTIKPSTSEIQLNKRSKSA 287

Query: 310 KLR 312
           KLR
Sbjct: 288 KLR 290


>gi|224542006|ref|ZP_03682545.1| hypothetical protein CATMIT_01179 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525063|gb|EEF94168.1| hypothetical protein CATMIT_01179 [Catenibacterium mitsuokai DSM
           15897]
          Length = 348

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 98/313 (31%), Positives = 164/313 (52%), Gaps = 28/313 (8%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCG 74
           G H+ +++++++  L+  PG++ LD T G GG+S    +      ++  LD D   +   
Sbjct: 48  GMHISIMVDEILEFLDIQPGQIGLDCTLGYGGHSSKMMEKLEGQGHLYGLDIDTIEIEKT 107

Query: 75  QETMRDYKEQFSLFQATFSQLQ--DYVPDK--GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            E +R+      +F    +  +  D V +K    D V+ DLGVSSMQID  +RGFS++K+
Sbjct: 108 TERLRNKGYGEDIFTPILTNFRNIDQVSEKYGPFDFVLADLGVSSMQIDNPERGFSYKKN 167

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTT 188
           GPLD+R++  +G  A +++   + ++L  IL    +E  A  +A  I    R     +TT
Sbjct: 168 GPLDLRLNPKAGRPAYEILKDLSREELEHILTENSDEPYADILAKNIYSFIRSGMEVETT 227

Query: 189 QDLSSLIQKTVYF-SKNNRI----HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
           Q L  +I KT+ F +  NR       A R FQALRI VN E E L   +      LK GG
Sbjct: 228 QQLYKIIDKTLSFVTDKNRKDIVNKTAARVFQALRIEVNQEFEVLYDFVEKLPLILKPGG 287

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
              +++FHS EDR+VKK F         ++++        +++ + + V+ P++E+   N
Sbjct: 288 KAAILTFHSGEDRIVKKSFKE-------LKNL-------GIYEDVCRNVIRPSREECHRN 333

Query: 304 RRSRSAKLRAGMR 316
            R++S K+R  ++
Sbjct: 334 SRAKSTKMRWAIK 346


>gi|149193782|ref|ZP_01870880.1| S-adenosyl-methyltransferase MraW [Caminibacter mediatlanticus
           TB-2]
 gi|149135735|gb|EDM24213.1| S-adenosyl-methyltransferase MraW [Caminibacter mediatlanticus
           TB-2]
          Length = 302

 Score =  140 bits (352), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 96/303 (31%), Positives = 158/303 (52%), Gaps = 17/303 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           HVPVLL + + L         +D T G GG+S +  +   ++  I +D+D  A++  +  
Sbjct: 5   HVPVLLNETVNLYKNIKKGYFIDCTLGFGGHSEAILEKYPHIKLIGIDQDIDALNFAKNR 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
           ++ Y  +        S+    +    + G++ D+GVSS Q+D  +RGF+F  S  LDMRM
Sbjct: 65  LKKYANRVEFINKRASEALSELKGLNIAGILADIGVSSFQLDNKERGFTFD-SNTLDMRM 123

Query: 138 SCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
           + +   SA DV+N  +   L  I     E ++  +IA  I+K R   P  + ++LS ++ 
Sbjct: 124 NKNQEFSAKDVINFYDKNSLEEIFKKYAESRKYKKIADLIIKNR---PINSNKELSEILM 180

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
           +    +K + + P    FQA+RI VNNE+ EL + L  +E     G +L +++FHSLEDR
Sbjct: 181 QAGIKNKKD-LAPI---FQAIRIEVNNELNELEKILDLSEDIAIDGTILGIITFHSLEDR 236

Query: 257 LVKKFFASRSGKVM----AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           +VK  F   + + +    A++     N      + +TKK +  + E++  N RSRSAKLR
Sbjct: 237 IVKNRFKEWAKRCICPDEAIKCECGGNNQKG--KILTKKPITASNEEIKKNPRSRSAKLR 294

Query: 313 AGM 315
             M
Sbjct: 295 GFM 297


>gi|165377202|ref|NP_689849.2| probable methyltransferase-like protein 15 isoform 2 [Homo sapiens]
 gi|119588674|gb|EAW68268.1| methyltransferase 5 domain containing 1, isoform CRA_c [Homo
           sapiens]
          Length = 273

 Score =  139 bits (351), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 76/187 (40%), Positives = 112/187 (59%), Gaps = 11/187 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCGQET 77
           H+PV++++V+  L+P  G++ LD TFG+GG++++  +  S+++  ALDRDP A +  +  
Sbjct: 72  HIPVMVDEVVHCLSPQKGQIFLDMTFGSGGHTKAILQKESDIVLYALDRDPTAYALAEHL 131

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              Y +Q       FSQ +  +   GV     DGV+ DLG SSMQ+D  +RGFS +K GP
Sbjct: 132 SELYPKQIRAMLGQFSQAEALLMKAGVQPGTFDGVLMDLGCSSMQLDTPERGFSLRKDGP 191

Query: 133 LDMRMSCSGI----SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           LDMRM         +A+DVVN  + + L  IL   GEEK A +IA AIV+ R   P   T
Sbjct: 192 LDMRMDGGRYPDMPTAADVVNALDQQALASILRTYGEEKHAKKIASAIVQARSIYPITRT 251

Query: 189 QDLSSLI 195
           Q L+S++
Sbjct: 252 QQLASIV 258


>gi|118594404|ref|ZP_01551751.1| methyltransferase [Methylophilales bacterium HTCC2181]
 gi|118440182|gb|EAV46809.1| methyltransferase [Methylophilales bacterium HTCC2181]
          Length = 213

 Score =  139 bits (350), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 90/215 (41%), Positives = 127/215 (59%), Gaps = 6/215 (2%)

Query: 109 FDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEK 167
            DLG+SS Q+D  +RGFSF+  G LDMRM+   + +A+D+VN  +  +L  IL + GEE+
Sbjct: 1   MDLGISSPQVDNAERGFSFRLDGQLDMRMNQDHLETAADIVNSYDEAELIYILKVYGEER 60

Query: 168 QASRIAHAIVKRRQS-APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIE 226
            A RIA +IV  R      + T  L+ +I K V   +  +  PATR+FQALRI VN EIE
Sbjct: 61  FAKRIARSIVAHRADVGRIEKTIQLAQIINKAVPKREPGK-DPATRTFQALRIKVNQEIE 119

Query: 227 ELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ 286
           E+ + L  A   L   G + V+SFHSLEDR+VK  FA +  +   +   IP  A      
Sbjct: 120 EIEKALPIAFDLLNKNGRIAVISFHSLEDRVVKN-FAKQQLETDLIPKYIPIKASEIRKS 178

Query: 287 SITK--KVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319
           ++ K  K+++P++ ++  N RSRSAKLR   R  E
Sbjct: 179 NLKKIGKLIIPSEIEIKENPRSRSAKLRVIERIEE 213


>gi|291528759|emb|CBK94345.1| S-adenosyl-methyltransferase MraW [Eubacterium rectale M104/1]
          Length = 349

 Score =  139 bits (349), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 95/313 (30%), Positives = 166/313 (53%), Gaps = 28/313 (8%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCG 74
           G H+ ++++++I  L+  PG+   DAT G GG++R+  +      ++ A D DP      
Sbjct: 49  GMHISIMVKEIIDFLDIKPGQTGFDATLGYGGHTRAMLEKLEGHGHMFATDVDPIESEKT 108

Query: 75  QETMRDY---KEQFSLFQATFSQLQDYVPD-KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           ++ + +    ++  ++    F  + +   +  G D ++ DLGVSSMQID  +RGFSF+  
Sbjct: 109 KKRLAEAGFGEDILTIKLQNFCTIDEIAKEVGGFDFILADLGVSSMQIDNPERGFSFKVD 168

Query: 131 GPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTT 188
           GPLD+R++  +GISA++ ++  + ++L+ +L    +E     +A AI    R+     TT
Sbjct: 169 GPLDLRLNPNAGISAAERLDNISREELSGMLYENSDEPYCEELAKAITDEIRKGNRIDTT 228

Query: 189 QDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
             L  +I++T+ F      K+       R+FQALRI VN+E E L + +     ALK GG
Sbjct: 229 TKLRHIIEQTLDFLPEKDKKDIIKKTCQRTFQALRIDVNHEFEVLYEFMEKLPGALKPGG 288

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
              +++FHS ED+LVKK               + +     ++   +K V+ P+ ++ A N
Sbjct: 289 RAAILTFHSGEDKLVKK--------------ALKAGYKAGIYSDYSKDVIRPSAQECAQN 334

Query: 304 RRSRSAKLRAGMR 316
            R+RS K+R  +R
Sbjct: 335 GRARSTKMRWAVR 347


>gi|257458736|ref|ZP_05623859.1| S-adenosyl-methyltransferase MraW [Campylobacter gracilis RM3268]
 gi|257443724|gb|EEV18844.1| S-adenosyl-methyltransferase MraW [Campylobacter gracilis RM3268]
          Length = 311

 Score =  138 bits (348), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 104/306 (33%), Positives = 165/306 (53%), Gaps = 17/306 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           H+PVL  + IA  +      ++D T G GG+S        ++  IA DRD  A+   +E 
Sbjct: 5   HIPVLFSQTIAAFSQLEDGYVIDCTLGYGGHSEGILTANPHLKLIACDRDAEAIEFSRER 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +  +K++  + +A FS++   +P+   + V G++ D+GVSS+Q+D   RGFS  KS  LD
Sbjct: 65  LSKFKDRIEIHKAKFSEILKILPEQKLRAVRGILADIGVSSLQLDKNCRGFS-TKSDALD 123

Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM  S  + A+ VVN+ +  DL RI    GE   A+ IA  I   R +AP  + + L++
Sbjct: 124 MRMDESAALDAAYVVNRYSQADLARIFREYGELTNANAIAAKIATARTNAPLTSAKALAN 183

Query: 194 LI-QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK----ALKAGGLLIVV 248
           LI  K V   K   I  AT +FQA+RI VN+E+ EL + L   E+    ++     + ++
Sbjct: 184 LIGTKPV---KGRSISTATLAFQAIRIEVNDELGELKRLLTLIEQKSRDSILTNATVAII 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           SFHSLEDR+VK+ F +     +     +        ++ + +TK  +    +++A N R+
Sbjct: 241 SFHSLEDRIVKEQFKAWERDCVCPSEFMRCECGGDHSLGKILTKSPLTADAQELAQNSRA 300

Query: 307 RSAKLR 312
            SAKLR
Sbjct: 301 ASAKLR 306


>gi|323452900|gb|EGB08773.1| mraW bacterial methyltransferase-like protein [Aureococcus
           anophagefferens]
          Length = 357

 Score =  138 bits (348), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 107/318 (33%), Positives = 161/318 (50%), Gaps = 31/318 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H PV+  + +  L        +D T G GG+S     K+G    ++ +DRD  A+    +
Sbjct: 46  HTPVMGNECVDWLVTKRDGFYVDGTLGGGGHSSLILAKLGDGGRLVGVDRDAAAIEAAGD 105

Query: 77  TMRDYKEQFSLFQATF-SQLQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +     +FS   A + + ++  V   G   DGV+ DLGVSS Q+D   RGFSF+  GP+
Sbjct: 106 RLA-ADGRFSSVHANYDAGVRRAVEAAGRKADGVLLDLGVSSRQLDDAARGFSFRGDGPI 164

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM    G +ASD+VN  + +DL  +L    +E  A R+A A+V  R   P  +T   +
Sbjct: 165 DMRMDGRDGTTASDLVNGLDERDLAFLLRANADEPNAGRVARALVAAR---PLGSTT--A 219

Query: 193 SLIQKTVYFSKNNRIHPA----------TRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
                     +  R  PA           R+FQALR+ VN+E   L + L      +  G
Sbjct: 220 LADAVAAAVPRQKRSAPAAHAQAQKKAVARAFQALRVEVNDEFGALERLLLDLPALVAEG 279

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHP---AVFQSITKKVVVPTQED 299
           G ++V+++HSLEDR VK+ F  R G+   +R   P + +    A F  + +K + P++ +
Sbjct: 280 GRVVVLTYHSLEDRRVKRIF--RDGR---LRGDAPRDDYGNKLAPFAPLHRKALPPSEGE 334

Query: 300 VAFNRRSRSAKLRAGMRT 317
           V  N R+RSAKLRA  RT
Sbjct: 335 VERNPRARSAKLRAAERT 352


>gi|78776996|ref|YP_393311.1| S-adenosyl-methyltransferase MraW [Sulfurimonas denitrificans DSM
           1251]
 gi|123550493|sp|Q30SF5|RSMH_SULDN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|78497536|gb|ABB44076.1| methyltransferase [Sulfurimonas denitrificans DSM 1251]
          Length = 307

 Score =  138 bits (348), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 102/305 (33%), Positives = 166/305 (54%), Gaps = 19/305 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           HVPVL  +V+         +++D T G GG++        N+  IA+D+D  A+    + 
Sbjct: 6   HVPVLYREVLEQFKNIKNGIVIDCTMGYGGHTSLILDANPNIKLIAIDQDQSAIDFSTKR 65

Query: 78  MRDYKEQFSLFQATFSQ-----LQDY-VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +  Y ++  + +  FS      L++Y + D  + G++ D+GVSS+Q+D  +RGFSF  S 
Sbjct: 66  LEPYGDRVVIKKGRFSTIIKEILKEYDISD--IRGILADIGVSSLQLDKKERGFSF-FSE 122

Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM     ++A+ V+N+ +  +L R+L   GE +   +IA  IV  R   PF + ++
Sbjct: 123 NLDMRMDEDAPLNANIVINEYSSHELQRVLLEYGELRNYKQIASFIVSNR---PFYSAKE 179

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           LS  ++  +   K  +IHPAT   QA+RI VNNE+ EL   L + ++       + ++SF
Sbjct: 180 LSDALRHLMPSGK--KIHPATLLMQAIRIEVNNELGELESLLDTIQERKFLDTKVAIISF 237

Query: 251 HSLEDRLVK-KFFASRSGKVMAVRHMIPSNAHPAVFQSI-TKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+VK +F   R+  +     M  +  +     +I TKK ++   +++  N RSRS
Sbjct: 238 HSLEDRIVKNRFNEWRASCICPQEAMRCTCTNDNSLGNILTKKPIIAQMDEIQANPRSRS 297

Query: 309 AKLRA 313
           AKLR 
Sbjct: 298 AKLRV 302


>gi|291523776|emb|CBK89363.1| S-adenosyl-methyltransferase MraW [Eubacterium rectale DSM 17629]
          Length = 349

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 95/313 (30%), Positives = 166/313 (53%), Gaps = 28/313 (8%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCG 74
           G H+ ++++++I  L+  PG+   DAT G GG++R+  +      ++ A D DP      
Sbjct: 49  GMHISIMVKEIIDFLDIKPGQTGFDATLGYGGHTRAMLEKLEGQGHMFATDVDPIESEKT 108

Query: 75  QETMRDY---KEQFSLFQATFSQLQDYVPD-KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           ++ + +    ++  ++    F  + +   +  G D ++ DLGVSSMQID  +RGFSF+  
Sbjct: 109 KKRLAEAGFGEDILTIKLQNFCTIDEIAKEVGGFDFILADLGVSSMQIDNPERGFSFKVD 168

Query: 131 GPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTT 188
           GPLD+R++  +GISA++ ++  + ++L+ +L    +E     +A AI    R+     TT
Sbjct: 169 GPLDLRLNPNAGISAAERLDNISREELSGMLYENSDEPYCEELAKAITDEIRKGNRIDTT 228

Query: 189 QDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
             L  +I++T+ F      K+       R+FQALRI VN+E E L + +     ALK GG
Sbjct: 229 TKLRHIIEQTLDFLPEKDKKDIIKKTCQRTFQALRIDVNHEFEVLYEFMEKLPGALKPGG 288

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
              +++FHS ED+LVKK               + +     ++   +K V+ P+ ++ A N
Sbjct: 289 RAAILTFHSGEDKLVKK--------------ALKAGYKAGIYSDYSKDVIRPSAQECAQN 334

Query: 304 RRSRSAKLRAGMR 316
            R+RS K+R  +R
Sbjct: 335 GRARSTKMRWAVR 347


>gi|85057932|ref|YP_456848.1| hypothetical protein AYWB_652 [Aster yellows witches'-broom
           phytoplasma AYWB]
 gi|84790037|gb|ABC65769.1| conserved hypothetical protein [Aster yellows witches'-broom
           phytoplasma AYWB]
          Length = 202

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 84/210 (40%), Positives = 119/210 (56%), Gaps = 10/210 (4%)

Query: 111 LGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQA 169
           +G+SS QID   RGFS+  + PLDMRM+ +  I+A  ++N  +   L  I  + GE K A
Sbjct: 1   MGLSSCQIDNPQRGFSYLHNTPLDMRMNINQTITAQYILNNYSFAQLKNIFKLYGEVKNA 60

Query: 170 SRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELA 229
           S +   I+K+R   P QT+ DL S+  +     K    H A + FQALRI VN E+E L 
Sbjct: 61  SLVVSEIIKQR---PLQTSYDLVSITDRFCNLQKG---HSAKKIFQALRIEVNQELESLK 114

Query: 230 QGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-FQSI 288
           Q L  +   LK    ++V+SFHSLEDR++K FF   S  V+  +  +P    P      I
Sbjct: 115 QALEQSLDLLKPNARIVVISFHSLEDRIIKHFFKKHSTFVLPKK--LPIAIIPQTPLSII 172

Query: 289 TKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318
           TKK  +P++E++  N RS SAKLR  ++ V
Sbjct: 173 TKKAFLPSEEEMQNNSRSISAKLRVAVKNV 202


>gi|307128732|ref|YP_003880762.1| S-adenosyl-methyltransferase MraW [Candidatus Sulcia muelleri CARI]
 gi|306483194|gb|ADM90064.1| S-adenosyl-methyltransferase MraW [Candidatus Sulcia muelleri CARI]
          Length = 306

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 100/301 (33%), Positives = 166/301 (55%), Gaps = 17/301 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H PVLL++ + LL      + +D TFG GG+S S  K  +N   +IA D+D +++   + 
Sbjct: 9   HNPVLLDETLTLLVKEIDGIYIDTTFGGGGHSFSLLKKLNNKGRLIAFDQDIYSIK--KN 66

Query: 77  TMRDYKEQFSLFQATF----SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            + D   +F+L +  +      L+ Y  +K V G++ DLG+SS QI+   RGFS + +  
Sbjct: 67  NIID--TRFNLVKTNYIFIKKILKRYNLNK-VSGILADLGISSHQINTPKRGFSIRSNSI 123

Query: 133 LDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM +   I+A  ++N  +  +L  I  I G+ K +  +A  I+K+R+    + T DL
Sbjct: 124 LDMRMDTFKKINAKYIINNYSYNELYNIFKIYGDRKNSKFLAKLIIKQRKKKIIKYTFDL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            ++++   +F K       ++ FQ+LRI VN+EI  L   L ++   LK GG + V+S+H
Sbjct: 184 INILK--FFFKKKIENKFLSKIFQSLRIEVNDEINALKYLLNNSLSILKPGGRIAVISYH 241

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           S+EDR+VKKF  + +   +       +N  P +   +  K +  ++E++  N RSRSA L
Sbjct: 242 SIEDRIVKKFLKTGNFNGVVSYDGYGNNLSPLIL--LKPKRIFSSKEEIKKNNRSRSAIL 299

Query: 312 R 312
           R
Sbjct: 300 R 300


>gi|238922879|ref|YP_002936392.1| methyltransferase [Eubacterium rectale ATCC 33656]
 gi|263433286|sp|C4ZBW8|RSMH1_EUBR3 RecName: Full=Ribosomal RNA small subunit methyltransferase H 1;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase 1;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH 1
 gi|238874551|gb|ACR74258.1| methyltransferase [Eubacterium rectale ATCC 33656]
          Length = 349

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 95/313 (30%), Positives = 166/313 (53%), Gaps = 28/313 (8%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCG 74
           G H+ ++++++I  L+  PG+   DAT G GG++R+  +      ++ A D DP      
Sbjct: 49  GMHISIMVKEIIDFLDIKPGQTGFDATLGYGGHTRAMLEKLEGQGHMFATDVDPIESEKT 108

Query: 75  QETMRDY---KEQFSLFQATFSQLQDYVPD-KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           ++ + +    ++  ++    F  + +   +  G D ++ DLGVSSMQID  +RGFSF+  
Sbjct: 109 KKRLAEAGFGEDILTIKLQNFCTIDEIAKEVGGFDFILADLGVSSMQIDNPERGFSFKVD 168

Query: 131 GPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTT 188
           GPLD+R++  +GISA++ ++  + ++L+ +L    +E     +A AI    R+     TT
Sbjct: 169 GPLDLRLNPNAGISAAERLDNISREELSGMLYENSDEPYCEELAKAITDEIRKGNRIGTT 228

Query: 189 QDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
             L  +I++T+ F      K+       R+FQALRI VN+E E L + +     ALK GG
Sbjct: 229 TKLRHIIEQTLDFLPEKDKKDIIKKTCQRTFQALRIDVNHEFEVLYEFMEKLPGALKPGG 288

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
              +++FHS ED+LVKK               + +     ++   +K V+ P+ ++ A N
Sbjct: 289 RAAILTFHSGEDKLVKK--------------ALKAGYKAGIYSDYSKDVIRPSAQECAQN 334

Query: 304 RRSRSAKLRAGMR 316
            R+RS K+R  +R
Sbjct: 335 GRARSTKMRWAVR 347


>gi|322379450|ref|ZP_08053820.1| S-adenosyl-methyltransferase MraW [Helicobacter suis HS1]
 gi|322380939|ref|ZP_08055005.1| S-adenosyl-methyltransferase MraW [Helicobacter suis HS5]
 gi|321146611|gb|EFX41445.1| S-adenosyl-methyltransferase MraW [Helicobacter suis HS5]
 gi|321148159|gb|EFX42689.1| S-adenosyl-methyltransferase MraW [Helicobacter suis HS1]
          Length = 303

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 102/302 (33%), Positives = 161/302 (53%), Gaps = 33/302 (10%)

Query: 20  HVPVLLEKVIALLNPA----PGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSC 73
           H  VLLE+V+A+           V++D T G GG++ +  +   N  V+ ++RD  A   
Sbjct: 21  HQSVLLEEVVAIFQEVIQSHSEPVLIDCTLGLGGHTLALLQTYPNLRVVGIERDKEASEQ 80

Query: 74  GQETMRDYKEQFSLFQATFSQ-LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             E +  +  +FS     F+  L   + +  + GV+ DLGVSS+Q+D  DRGFSF  +  
Sbjct: 81  ALEKLTPFAHRFSFKSGNFATILPSLLKENRICGVLADLGVSSLQLDHLDRGFSFN-APT 139

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM     + AS V+N  +   L +IL   GE     ++A+ IV+ R   PF + +D 
Sbjct: 140 LDMRMDIDQSLDASKVINTYSAYALEKILQA-GEVYAPKKMANLIVQNR---PFYSAKDF 195

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           +  I +    S++++ HPAT  FQA+R+ VN+E+  L Q L   +   +A  ++ ++SFH
Sbjct: 196 ADFISQ---HSRHSKHHPATLIFQAIRMEVNSEMHNLDQLLECVQSLKEA--IVCIISFH 250

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR VK  F   +            N    +F    KK ++P+++ +  NRR+RSAK+
Sbjct: 251 SLEDRKVKHAFKEWA-----------QNRGVLLF----KKPIIPSKKAIQENRRARSAKM 295

Query: 312 RA 313
           RA
Sbjct: 296 RA 297


>gi|323485088|ref|ZP_08090441.1| hypothetical protein HMPREF9474_02192 [Clostridium symbiosum
           WAL-14163]
 gi|323401644|gb|EGA93989.1| hypothetical protein HMPREF9474_02192 [Clostridium symbiosum
           WAL-14163]
          Length = 348

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 104/318 (32%), Positives = 162/318 (50%), Gaps = 36/318 (11%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF--CKMGS-NVIALDRDPFAVSC 73
           +G H+ + +++++  L   PG+  LDAT G GG++++   C  G  ++  LD D    + 
Sbjct: 48  VGMHISICVKEILEFLQIQPGQKGLDATLGYGGHTQAILECLQGKGHIYGLDVD----AV 103

Query: 74  GQETMRDY-------KEQFSLFQATFSQLQDYVPDKGV-DGVVFDLGVSSMQIDCGDRGF 125
            QE  R          E  ++ +  F+ +     + G  D V+ DLGVSSMQID  DRGF
Sbjct: 104 EQEKTRKRLEALGYGPELLTVRKLNFANIDQVAAEAGTFDFVLADLGVSSMQIDNPDRGF 163

Query: 126 SFQKSGPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK-RRQSA 183
           S++  GPLD+R+ S  GISA++ +   + ++L  +L    +E  A+ I+ A++  RR+  
Sbjct: 164 SYKNEGPLDLRLDSEKGISAAERLKDISREELEGMLAENSDEPYAAEISRAVISARRKGT 223

Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPAT-----RSFQALRIFVNNEIEELAQGLRSAEKA 238
              TT  L  LI++ + F        A      R+FQALRI VN+E E L + L      
Sbjct: 224 AIDTTTKLRRLIEEALSFLPEGERKEAVKKSCQRTFQALRIDVNSEFEVLEEFLEKLPDI 283

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L  GG   +++FHS EDRLVKK F     +               V+  I  +V+ PT E
Sbjct: 284 LSPGGRAAILTFHSGEDRLVKKSFKRLKKQ--------------GVYSEIADEVIRPTAE 329

Query: 299 DVAFNRRSRSAKLRAGMR 316
           +   N R+RS K+R  ++
Sbjct: 330 ECNMNSRARSTKMRWAVK 347


>gi|321310206|ref|YP_004192535.1| rRNA small subunit methyltransferase H [Mycoplasma haemofelis str.
           Langford 1]
 gi|319802050|emb|CBY92696.1| rRNA small subunit methyltransferase H [Mycoplasma haemofelis str.
           Langford 1]
          Length = 301

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 91/300 (30%), Positives = 165/300 (55%), Gaps = 23/300 (7%)

Query: 26  EKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK 82
           ++V++ L  +   + LD TFGAGG+SR         S +I LD D  AV  G++  ++  
Sbjct: 3   DEVVSYLLGSKDGLYLDCTFGAGGHSRQLLSKISSQSKLIGLDIDSVAVEMGKKLEQE-D 61

Query: 83  EQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS- 138
           ++FS+ +  F++L DY  +  +    G++FDLG S MQ+    RGFS+ +   LDMRM  
Sbjct: 62  DRFSMVRLNFARLSDYQKENNLPKARGIIFDLGTSMMQLRDPSRGFSYLEDAHLDMRMDQ 121

Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK-RRQSAPFQTTQDLSSLIQK 197
            S  +A+D++N  +   L  I    G+   + R+ + I   R++ +  +TT +   LI++
Sbjct: 122 TSKTTAADILNYGSRMQLKDIFRKYGDIHNSDRLINLISDHRKKYSCIETTLEFRDLIEE 181

Query: 198 TVYFSKNNRIHPA------TRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
                 + ++ P       +R+FQA+RI VN+EI+     + S  + L+ GG+  +++FH
Sbjct: 182 A-----HKKLDPVRLRKEISRTFQAIRIAVNDEIKSFEMAMNSLHEVLEVGGVACIITFH 236

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           S E+ ++K  + S+    + +R    +  +   F+ ++   +VPT++++A NR SRS+KL
Sbjct: 237 SGEEDVLKT-WKSKYCDHIEIRDYSKNMVNK--FRFVSNGYIVPTEKEIAENRSSRSSKL 293


>gi|21749636|dbj|BAC03631.1| unnamed protein product [Homo sapiens]
          Length = 273

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 75/187 (40%), Positives = 112/187 (59%), Gaps = 11/187 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCGQET 77
           H+PV++++V+  L+P  G++ LD TFG+GG++++  +  S+++  ALDRDP A +  +  
Sbjct: 72  HIPVMVDEVVHCLSPQKGQIFLDMTFGSGGHTKAILQKESDIVLYALDRDPTAYALAEHL 131

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              Y +Q       FSQ +  +   GV     DGV+ DLG SSMQ+D  +RGFS +K GP
Sbjct: 132 SELYPKQIRAMLGQFSQAEALLMKAGVQPGTFDGVLMDLGCSSMQLDTPERGFSLRKDGP 191

Query: 133 LDMRMSCSGI----SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           LD+RM         +A+DVVN  + + L  IL   GEEK A +IA AIV+ R   P   T
Sbjct: 192 LDVRMDGGRYPDMPTAADVVNALDQQALASILRTYGEEKHAKKIASAIVQARSIYPITRT 251

Query: 189 QDLSSLI 195
           Q L+S++
Sbjct: 252 QQLASIV 258


>gi|283797253|ref|ZP_06346406.1| S-adenosyl-methyltransferase MraW [Clostridium sp. M62/1]
 gi|291075103|gb|EFE12467.1| S-adenosyl-methyltransferase MraW [Clostridium sp. M62/1]
 gi|295092386|emb|CBK78493.1| S-adenosyl-methyltransferase MraW [Clostridium cf. saccharolyticum
           K10]
          Length = 383

 Score =  137 bits (345), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 95/315 (30%), Positives = 161/315 (51%), Gaps = 32/315 (10%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCG 74
           G H+ + +++++   +  PG+V LDAT G GG++R   K      ++  LD DP      
Sbjct: 84  GMHISICVKEILDFFDIRPGQVGLDATLGYGGHTREMLKKLQGQGHIYGLDVDPIESEKT 143

Query: 75  QETMRDY---KEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           ++ + D     +  ++    F+ +     + G  D ++ DLGVSSMQID  +RGF+++  
Sbjct: 144 KKRLADAGFGPDILTVKLMNFADIDKVAEEAGPFDFILADLGVSSMQIDNPERGFTYKYE 203

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTT 188
           GPLD+RM  + G +A++ +   + ++   +L    +E  A  I+H +  R ++     TT
Sbjct: 204 GPLDLRMDPTRGETAAERLKGMDREEFCGMLMENSDEPYAEEISHTVFSRLKRGGRIDTT 263

Query: 189 QDLSSLIQKTVYFSKNNRIHPA-----TRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
             L   +++ + F        A      R+FQALRI VN+E E L   L     ALK+GG
Sbjct: 264 TQLREAVEEALSFLPEKERKEAVKKSCARTFQALRIDVNSEFEVLYAFLEKLPSALKSGG 323

Query: 244 LLIVVSFHSLEDRLVKKFFAS--RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
              +++FHS EDRLVKK F    R+G                ++  I ++V+ P+ E+ A
Sbjct: 324 KAAILTFHSGEDRLVKKSFREYKRAG----------------LYSEIAQEVIRPSAEECA 367

Query: 302 FNRRSRSAKLRAGMR 316
            N R++S K+R  ++
Sbjct: 368 RNSRAKSTKMRWAVK 382


>gi|304163|gb|AAC36835.1| Putative product of orfB has significant sequence identity to
           putative product of orfB sequence upstream of pbpB gene
           in E.coli. putative [Bacillus subtilis]
          Length = 204

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 81/199 (40%), Positives = 118/199 (59%), Gaps = 5/199 (2%)

Query: 118 IDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
           +D  +RGFS+    PLDMRM  S  +SA +VVN+   +DL RI    GEEK + +IA  I
Sbjct: 1   LDTPERGFSYHHDAPLDMRMDQSATLSAKEVVNEWRYEDLVRIFFKYGEEKFSKQIARKI 60

Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
            + R  +P QTT  L  LI+  +   ++ +  HPA R FQA+RI VN+E+    + L  A
Sbjct: 61  EEARMKSPIQTTGQLVDLIKDAIPAPARRSGGHPAKRVFQAIRIAVNDELRVFEEALEQA 120

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVV 293
            + LK GG + V++FHSLEDR+ K  F  +S   ++     +IP    P + + IT+K +
Sbjct: 121 IEVLKPGGRVSVITFHSLEDRICKTTFKEKSSLPELPPGLPVIPEEFEPEL-KLITRKPI 179

Query: 294 VPTQEDVAFNRRSRSAKLR 312
             +QE++  N R+RSAKLR
Sbjct: 180 TASQEELEENNRARSAKLR 198


>gi|323693536|ref|ZP_08107740.1| S-adenosyl-methyltransferase MraW [Clostridium symbiosum WAL-14673]
 gi|323502391|gb|EGB18249.1| S-adenosyl-methyltransferase MraW [Clostridium symbiosum WAL-14673]
          Length = 348

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 103/318 (32%), Positives = 162/318 (50%), Gaps = 36/318 (11%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF--CKMGS-NVIALDRDPFAVSC 73
           +G H+ + +++++  L   PG+  LDAT G GG++++   C  G  ++  LD D    + 
Sbjct: 48  VGMHISICVKEILEFLQIQPGQKGLDATLGYGGHTQAMLECLQGKGHIYGLDVD----AV 103

Query: 74  GQETMRDY-------KEQFSLFQATFSQLQDYVPDKGV-DGVVFDLGVSSMQIDCGDRGF 125
            QE  R          E  ++ +  F+ +     + G  D V+ DLGVSSMQID  DRGF
Sbjct: 104 EQEKTRKRLEALGYGPELLTVRKLNFANIDQVAAEVGTFDFVLADLGVSSMQIDNPDRGF 163

Query: 126 SFQKSGPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK-RRQSA 183
           S++  GPLD+R+ S  GISA++ +   + ++L  +L    +E  A+ I+ A++  RR+  
Sbjct: 164 SYKNEGPLDLRLDSEKGISAAERLKDISREELEGMLAENSDEPYAAEISRAVISARRKGT 223

Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPAT-----RSFQALRIFVNNEIEELAQGLRSAEKA 238
              TT  L  L+++ + F        A      R+FQALRI VN+E E L + L      
Sbjct: 224 AIDTTTKLRRLVEEALSFLPEGERKEAVKKSCQRTFQALRIDVNSEFEVLEEFLEKLPDI 283

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L  GG   +++FHS EDRLVKK F     +               V+  I  +V+ PT E
Sbjct: 284 LSPGGRAAILTFHSGEDRLVKKSFKRLKKQ--------------GVYSEIADEVIRPTAE 329

Query: 299 DVAFNRRSRSAKLRAGMR 316
           +   N R+RS K+R  ++
Sbjct: 330 ECNMNSRARSTKMRWAVK 347


>gi|253577924|ref|ZP_04855196.1| MraW methylase MraW [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850242|gb|EES78200.1| MraW methylase MraW [Ruminococcus sp. 5_1_39BFAA]
          Length = 351

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 95/313 (30%), Positives = 163/313 (52%), Gaps = 28/313 (8%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF--CKMG-SNVIALDRDPFAVSCG 74
           G H+ +++++++  LN  PG+   DAT G GG++++   C  G  ++ A D DP   +  
Sbjct: 51  GMHISIMVKEILDFLNIQPGETGFDATLGYGGHTKAMLQCLNGKGHIYATDVDPEESAKT 110

Query: 75  QETMRDY---KEQFSLFQATFSQLQDYVPD-KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           ++ + +    +E  ++    F  + +   +  G D ++ DLGVSSMQID   RGFSF+  
Sbjct: 111 KKRLAEQGFGEELLTVKLQNFCTIDEIAKEVGGFDFILADLGVSSMQIDNPKRGFSFKTD 170

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTT 188
           GPLD+R++  +GISA+  ++  + ++L  +L    +E     +A AI    R+     TT
Sbjct: 171 GPLDLRLNQETGISAAQRLDTISREELAGMLCENSDEPYCEELAKAITDEIRRGNHIDTT 230

Query: 189 QDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
             L  +I+KT+ F      K        R+FQALRI VN+E E L + +     AL+ GG
Sbjct: 231 TKLRQVIEKTLDFLPEKEKKETIKKTCQRTFQALRIDVNHEFEVLYEFMEKLPDALRPGG 290

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            + +++FHS ED+LVKK               + +     ++    K V+ P+ ++   N
Sbjct: 291 RVAILTFHSGEDKLVKK--------------ALKAGYKDGIYSDYAKDVIRPSAKECTQN 336

Query: 304 RRSRSAKLRAGMR 316
            R+RS K+R  ++
Sbjct: 337 PRARSTKMRWAIK 349


>gi|301633398|gb|ADK86952.1| S-adenosyl-methyltransferase MraW [Mycoplasma pneumoniae FH]
          Length = 308

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 97/300 (32%), Positives = 157/300 (52%), Gaps = 12/300 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H  VLL++VI  LN       LD T G GG+S+   +  +   +   D D  +++   E 
Sbjct: 7   HKSVLLDEVIHNLNIKGDGNYLDLTVGFGGHSQHILEQLTTGTLTGNDMDKDSITFCTEL 66

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
            +D K+   L    F+   +++    V   DG++ DLGVSS Q+D  +RGFSF+ +GP D
Sbjct: 67  FKD-KKNVVLVHDNFANFFNHLKQLKVTKFDGILIDLGVSSYQLDKPERGFSFKHAGPFD 125

Query: 135 MRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           MRM  S    +A D++ + + ++LT +L   GE      IA A+     +    TT +++
Sbjct: 126 MRMHQSDRVPTALDILERLSEEELTHVLKKFGEIAHPKPIAKALKTLINNIKNPTTVEVA 185

Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             ++     F K    +   + FQA+RI++N E+E L   L+   K L   G  +V+ FH
Sbjct: 186 ETVKAAASNFEKYKSRNYLAKVFQAIRIYLNRELESLEIVLQHIPKLLNNKGRFLVIVFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLE++LV+ +    +  V      +P    P  F+ ITKK ++PT++++  N R+RSAKL
Sbjct: 246 SLEEKLVRNYIFKLTHFVQPPE--LPVKLTPP-FELITKKPILPTEQEIKTNPRARSAKL 302


>gi|150391505|ref|YP_001321554.1| S-adenosyl-methyltransferase MraW [Alkaliphilus metalliredigens
           QYMF]
 gi|263433292|sp|A6TUM7|RSMH2_ALKMQ RecName: Full=Ribosomal RNA small subunit methyltransferase H 2;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase 2;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH 2
 gi|149951367|gb|ABR49895.1| S-adenosyl-methyltransferase MraW [Alkaliphilus metalliredigens
           QYMF]
          Length = 349

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 102/315 (32%), Positives = 160/315 (50%), Gaps = 32/315 (10%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCG 74
           G H  + + +++  L   PG+  LDAT G GG++    K      ++ A+D D   +   
Sbjct: 50  GMHRSICVNEILEFLKITPGQTGLDATLGYGGHTLEMLKRLNSKGHLYAIDVDSIELPRT 109

Query: 75  QETMRDY---KEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           QE +       E  ++ Q  FS +     + G ++ V+ DLGVSSMQID  +RGFSF+  
Sbjct: 110 QERLEGLGYGSEILTIKQMNFSNIDQIALESGPLNFVLADLGVSSMQIDNPERGFSFKSE 169

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTT 188
           GPLD+R++ + GISA+  +   +  +L  +L    +E  ++ I+ AI+   ++     TT
Sbjct: 170 GPLDLRLNPNRGISAAARLKTISQDELQGMLLENADEPNSAAISRAIISEIKKGIDISTT 229

Query: 189 QDLSSLIQKTVYF----SKNNRIHPAT-RSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
             L  +I+  + F    ++ + I  +  R FQALRI VN+E E L + L      L  GG
Sbjct: 230 TQLQQIIKDALKFIPQNTRKDEIKKSCQRCFQALRIDVNDEFEMLYEFLEKLPATLAEGG 289

Query: 244 LLIVVSFHSLEDRLVKKFFAS--RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
            + ++SFHS EDRLVKK F    R G                V++ I    + P+ E+  
Sbjct: 290 RVAILSFHSGEDRLVKKSFQRFFREG----------------VYREIAPNFIRPSTEECN 333

Query: 302 FNRRSRSAKLRAGMR 316
            N R+RSAKLR  ++
Sbjct: 334 TNGRARSAKLRWAIK 348


>gi|255026327|ref|ZP_05298313.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL
           J2-003]
          Length = 227

 Score =  135 bits (341), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 74/214 (34%), Positives = 123/214 (57%), Gaps = 8/214 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VLL + + +L   P  + +DAT G  G+S           ++ A D+D  A+   + 
Sbjct: 4   HETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDNAKI 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + DY ++ +  +A F  +++ + ++G   VDG+++DLGVSS Q+D  +RGFS+ +   L
Sbjct: 64  KLADYSDKVTFIKANFRDMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQDAAL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     ++A  VVN+ + +DL RI    GEEK + +IA  I +RR+  P +TT +L 
Sbjct: 124 DMRMDQEQELTAKTVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTGELV 183

Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEI 225
            +I+  +   ++    HP  R+FQA+RI VN+E+
Sbjct: 184 DIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDEL 217


>gi|13508054|ref|NP_110003.1| SAM-dependent methytransferase [Mycoplasma pneumoniae M129]
 gi|2496335|sp|P75466|RSMH_MYCPN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|1674216|gb|AAB96169.1| SAM-dependent methytransferase [Mycoplasma pneumoniae M129]
          Length = 308

 Score =  135 bits (340), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 97/300 (32%), Positives = 156/300 (52%), Gaps = 12/300 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H  VLL++VI  LN       LD T G GG+S+   +  +   +   D D  +++   E 
Sbjct: 7   HKSVLLDEVIHNLNIKGDGNYLDLTVGFGGHSQHILEQLTTGTLTGNDMDKDSITFCTEL 66

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
            +D K+   L    F+   +++    V   DG++ DLGVSS Q+D  +RGFSF+ +GP D
Sbjct: 67  FKD-KKNVVLVHDNFANFFNHLKQLKVTKFDGILIDLGVSSYQLDKPERGFSFKHAGPFD 125

Query: 135 MRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           MRM  S    +A D++ + + ++LT +L   GE      IA A+     +    TT +++
Sbjct: 126 MRMHQSDRVPTALDILERLSEEELTHVLKKFGEIAHPKPIAKALKTLINNTKNPTTVEVA 185

Query: 193 SLIQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             ++     F K    +   + FQA+RI++N E+E L   L+   K L   G  +V+ FH
Sbjct: 186 ETVKAAASNFEKYKSRNYLAKVFQAIRIYLNRELESLEIVLQHIPKLLNNKGRFLVIVFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLE++LV+ +    +  V      +P    P  F+ ITKK ++PT++++  N R RSAKL
Sbjct: 246 SLEEKLVRNYIFKLTHFVQPPE--LPVKLTPP-FELITKKPILPTEQEIKTNPRVRSAKL 302


>gi|295109383|emb|CBL23336.1| S-adenosyl-methyltransferase MraW [Ruminococcus obeum A2-162]
          Length = 350

 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 99/316 (31%), Positives = 159/316 (50%), Gaps = 34/316 (10%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF--CKMGS-NVIALDRDPFAVSCG 74
           G H+ +++++++  L   PG+   DAT G GG++++   C  G  ++ A D DP   +  
Sbjct: 51  GMHISIMVKEILDFLKIQPGETGFDATLGYGGHTKAMMECLHGEGHMYATDVDPEESA-- 108

Query: 75  QETMRDYKEQ------FSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSF 127
            +T +   EQ       ++    F  + +   + G  D ++ DLGVSSMQID   RGFSF
Sbjct: 109 -KTRKRLAEQGFGEDILTVKLQNFCTIDEIAKEAGGFDFILADLGVSSMQIDNPKRGFSF 167

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPF 185
           +  GPLD+R++   GISA++ ++     +L  +L    +E     IA AI    R+    
Sbjct: 168 RADGPLDLRLNQEKGISAAERLDTIGRDELAGMLYENSDEPYCEEIAKAITDEIRRGNRV 227

Query: 186 QTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
            TT  L  +I+KT+ F      K+       R FQALRI VN E E L + +     ALK
Sbjct: 228 DTTTKLREIIEKTLSFIPEKERKDTVRKTCQRVFQALRIDVNREFEVLYEFMEKLPDALK 287

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300
            GG + +++FHS ED+LVKK               + +     ++    K V+ P+ ++ 
Sbjct: 288 PGGRVAILTFHSGEDKLVKK--------------ALKAGYKAGIYSDYAKDVIRPSAQEC 333

Query: 301 AFNRRSRSAKLRAGMR 316
           A N R+RS K+R  ++
Sbjct: 334 AQNGRARSTKMRWAVK 349


>gi|160940252|ref|ZP_02087597.1| hypothetical protein CLOBOL_05141 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436832|gb|EDP14599.1| hypothetical protein CLOBOL_05141 [Clostridium bolteae ATCC
           BAA-613]
          Length = 367

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 100/316 (31%), Positives = 159/316 (50%), Gaps = 32/316 (10%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGS--NVIALDRDPFAVSC 73
           +G H+P+++ +++  L   PG+  LDAT G GG+ SR   ++ S  ++ ALD D   +  
Sbjct: 62  VGMHIPIMVNEILEFLQIQPGQTGLDATLGYGGHTSRMLERLESKGHIYALDVDSIEMEK 121

Query: 74  GQ---ETMRDYKEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQK 129
            +   E M    E  ++ +  F+ +     + G +D V+ DLGVSSMQID   RGFSF+K
Sbjct: 122 TRQRLEHMGYGPEILTIRKLNFANIDQIAGEFGPLDFVLADLGVSSMQIDNPSRGFSFKK 181

Query: 130 SGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQT 187
            GPLD+R+    G  AS+ +     ++LT +L    +E  A  IA  ++   ++     T
Sbjct: 182 EGPLDLRLDPLKGEPASERLKGLTQEELTGMLMENSDEPYAEEIARTVMGEIKRGREVAT 241

Query: 188 TQDLSSLIQKTVYFSKNNRIHPAT-----RSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           T  L  ++ + + F        A      R+FQALRI VN+E E L + L      LK G
Sbjct: 242 TTRLYEMVDRALAFIPEEERKEAVKKSCQRTFQALRIDVNSEFEVLYEFLDKLPGVLKPG 301

Query: 243 GLLIVVSFHSLEDRLVKKFFAS--RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300
           G   +++FHS EDR+VKK F    R+G                ++  +   V+ P+ E+ 
Sbjct: 302 GRAAILTFHSGEDRIVKKSFKEMYRAG----------------LYSQVAGDVIRPSAEEC 345

Query: 301 AFNRRSRSAKLRAGMR 316
             N R+ S K+R  ++
Sbjct: 346 RMNSRAHSTKMRWAIK 361


>gi|153813493|ref|ZP_01966161.1| hypothetical protein RUMOBE_03913 [Ruminococcus obeum ATCC 29174]
 gi|149830437|gb|EDM85529.1| hypothetical protein RUMOBE_03913 [Ruminococcus obeum ATCC 29174]
          Length = 352

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 98/317 (30%), Positives = 161/317 (50%), Gaps = 34/317 (10%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF--CKMGS-NVIALDRDPFAVSCG 74
           G H+ +++ +++  L   PG+   DAT G GG++++   C  G  ++ A D DP   +  
Sbjct: 51  GMHISIMVNEILDFLKIQPGETGFDATLGYGGHTKAMMECLHGEGHMYATDVDPEESA-- 108

Query: 75  QETMRDYKEQ------FSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSF 127
            +T +   EQ       ++    F  + +   + G  D ++ DLGVSSMQID   RGFSF
Sbjct: 109 -KTRKRLAEQGFGEDILTVKLQNFCTIDEIAKEAGGFDFILADLGVSSMQIDNPKRGFSF 167

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPF 185
           +  GPLD+R++   GISA++ +++ +  +L  +L    +E     IA AI    R+    
Sbjct: 168 RADGPLDLRLNQEKGISAAERLDKISRDELAGMLYENSDEPYCEEIAKAITDEIRKGNRV 227

Query: 186 QTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
            TT  L  +I++T+ F      K+       R FQALRI VN E E L + +     ALK
Sbjct: 228 DTTTKLREIIEETLDFLPEKEKKDTVRKTCQRVFQALRIDVNREFEVLYEFMEKLPDALK 287

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300
            GG + +++FHS ED+LVKK               + +     ++    K V+ P+ ++ 
Sbjct: 288 PGGRVAILTFHSGEDKLVKK--------------ALKAGYKAGIYSDYAKDVIRPSAQEC 333

Query: 301 AFNRRSRSAKLRAGMRT 317
           A N R+RS K+R  +++
Sbjct: 334 AQNGRARSTKMRWAVKS 350


>gi|229495663|ref|ZP_04389392.1| S-adenosyl-methyltransferase MraW [Porphyromonas endodontalis ATCC
           35406]
 gi|229317433|gb|EEN83337.1| S-adenosyl-methyltransferase MraW [Porphyromonas endodontalis ATCC
           35406]
          Length = 307

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 104/306 (33%), Positives = 160/306 (52%), Gaps = 19/306 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQ 75
           H+PVL  + +  L   P  V  D T G  G++    R   + G ++ + DRD  A++   
Sbjct: 3   HLPVLCREAVEALLTRPNGVYADVTMGGAGHTCEILRHLGEKG-HLYSFDRDQDAMANAP 61

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              R     F+   + F  L  ++   GV   DGV+ DLGVSS   D  +RGFSF+  G 
Sbjct: 62  VDPR-----FTFVASDFRYLSRWMRYFGVEHLDGVLADLGVSSHHFDTAERGFSFRFEGA 116

Query: 133 L-DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           L DMRM+  +G +A+D++N  +V+ L+ +    GE K A RIA  I K R S  ++T + 
Sbjct: 117 LPDMRMNNRAGRTAADLLNTYSVEALSDLFYYYGELKDARRIAALIEKGRPSTGYRTIES 176

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L  ++   +      R    ++ FQALRI VN+E+  L   L S    L  GG L+V+++
Sbjct: 177 LLEVLAPVLPPQPPLRRKKLSQLFQALRIEVNDELGALRSLLTSLTSLLAPGGRLVVLTY 236

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNA----HPAVFQSITKKVVVPTQEDVAFNRRS 306
           HSLEDRLVK++     G   +V    P  A      +  + + +K ++P+  ++A N R+
Sbjct: 237 HSLEDRLVKEWGKGLLGTSQSVEDNDPMAAIYGQKRSEIEVVNRKPILPSDAEIAENPRA 296

Query: 307 RSAKLR 312
           RSAK+R
Sbjct: 297 RSAKMR 302


>gi|291519694|emb|CBK74915.1| S-adenosyl-methyltransferase MraW [Butyrivibrio fibrisolvens 16/4]
          Length = 347

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 98/313 (31%), Positives = 151/313 (48%), Gaps = 28/313 (8%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVI-ALDRDPFAVSCG 74
           G H+ +++++++  L   PG+  LD T G GG++R   +   G   I  LD DP      
Sbjct: 48  GMHISIMVQEILDFLQIQPGQKGLDCTLGYGGHTRKMLEQLQGQGCIYGLDVDPIESKKT 107

Query: 75  QETMRDY---KEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            E +R +   ++ F      F+ +     + G  D V+ DLGVSSMQID  +RGFS++  
Sbjct: 108 VERLRGFGFGEDNFQFRLINFANIDKVAEEAGKFDFVLADLGVSSMQIDNPERGFSYKID 167

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK-RRQSAPFQTT 188
           GPLD+R+    G SA++ ++    ++   ++    +E  A  IAH +     +  P  TT
Sbjct: 168 GPLDLRLDPEHGESAAERLHNITEEEFIGMMVENSDEPYAEEIAHKVFTLMAKGNPMDTT 227

Query: 189 QDLSSLIQKTVYFSKNNRIHPA-----TRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
             L   I + ++         A      R FQALRI VN+E E L   L      LK GG
Sbjct: 228 TALREAISEALWKVPKEEKEQAIKKSCARVFQALRIDVNSEFEVLYTFLEKLPGILKPGG 287

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            + +++FHS EDRLVKK F                 A   V+  ++  VV P+ E+   N
Sbjct: 288 RVAILTFHSGEDRLVKKSFKEL--------------AKEGVYSEVSSDVVRPSAEECRIN 333

Query: 304 RRSRSAKLRAGMR 316
            RS+S K+R  ++
Sbjct: 334 PRSKSTKMRWAVK 346


>gi|303278410|ref|XP_003058498.1| MraW methylase/RNA recognition motif protein [Micromonas pusilla
           CCMP1545]
 gi|226459658|gb|EEH56953.1| MraW methylase/RNA recognition motif protein [Micromonas pusilla
           CCMP1545]
          Length = 875

 Score =  134 bits (336), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 102/322 (31%), Positives = 161/322 (50%), Gaps = 34/322 (10%)

Query: 18  GDHVPVLLEKVI-ALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSC 73
           G H P +L + I AL+ P    V +D TFG GG+SR      SN   + A D DP A++ 
Sbjct: 487 GTHTPAMLRETIDALVAPNRDGVYVDGTFGRGGHSRGILAALSNRGRLHAFDMDPEAIAE 546

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGV--DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            ++ +     +F++  A F  +   +  KGV   GV  DLG+SS Q D   RGF  ++ G
Sbjct: 547 AKK-LEAEDARFTIHHAPFGCMDTVLKPKGVVVAGVFLDLGISSPQFDDASRGFRPEQDG 605

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQAS---RIAHAIVKRRQSAPF-- 185
           PLD+R   + GI ASD + +    DL R++   GE   A+   R+A A+   R++     
Sbjct: 606 PLDLRFDVTRGIPASDYLRRVERDDLARVIETYGETADATAARRVADAVCLARETGEGVP 665

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            TT+  +SL+ +     +   +HPA  +FQALRI +N E +E+ +G+R+A + ++ GG L
Sbjct: 666 STTKAFASLVAR-AKGQEYQAMHPAKLTFQALRIELNQEFDEMRRGMRAAVEVMEDGGRL 724

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP-----SNAHPAVFQSI-----------T 289
            V+++   E  ++  FF      V   R  +P      + HP+V   +            
Sbjct: 725 GVLTWKHSECAILVDFFR----HVEETRPDLPLARFLEDRHPSVAAEVALANSDGWALTA 780

Query: 290 KKVVVPTQEDVAFNRRSRSAKL 311
                P++++   N RSRSA L
Sbjct: 781 DDAKRPSEKETRENSRSRSAIL 802


>gi|71031997|ref|XP_765640.1| S-adenosyl-methyltransferase mraW [Theileria parva strain Muguga]
 gi|68352597|gb|EAN33357.1| S-adenosyl-methyltransferase mraW, putative [Theileria parva]
          Length = 389

 Score =  133 bits (334), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 94/309 (30%), Positives = 155/309 (50%), Gaps = 51/309 (16%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
           +H+PV+L++ +  L   P  + LD T G GG++    +       +I++DRDP +V   +
Sbjct: 72  EHIPVMLKESMEYLITDPKGLYLDVTLGYGGHTEEILRRLNPKGKLISIDRDPESVYFNR 131

Query: 76  ETMRDYKEQ--FSLFQATFSQLQDYV-----PDKGVDG---------------------- 106
           + ++ Y E+   S+    FS + D +     P +G  G                      
Sbjct: 132 KRLKSYIEESRLSVEIGKFSGIIDLLKSHKLPTEGYTGFFLPILLFKLVISTLYLLYKEF 191

Query: 107 -VVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC----------------SGISASDVVN 149
            +V DLG+S+ Q++   RGFS+ K+GPLDMRMS                 S  +A  +VN
Sbjct: 192 RIVADLGLSTHQLENSKRGFSYMKNGPLDMRMSSPLNDPFNPNFKIDVKSSENTAYQLVN 251

Query: 150 QANVKDLTRILGILGEEKQASRIAHAIV-KRRQSAPFQTTQDLSSLIQKTVYFSKNNRIH 208
           +++   L +I    G+E +A+ IA  I+ KRR      +T+ L S++  ++     +++ 
Sbjct: 252 KSDESTLRKIFKEFGQEPRAASIAKKIIEKRRILGEIDSTEKLKSVVMDSLPMFHRSKMR 311

Query: 209 PATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFAS-RSG 267
             +R FQALRI VN+E+ EL+  L    + LK  G  + +S+H+LEDRLVK  F + R+ 
Sbjct: 312 TLSRIFQALRIKVNDELNELSSFLNFIPQLLKYNGRFVCISYHALEDRLVKNSFINLRNF 371

Query: 268 KVMAVRHMI 276
           K   V+  I
Sbjct: 372 KTPTVKFNI 380


>gi|291276974|ref|YP_003516746.1| putative S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Helicobacter mustelae 12198]
 gi|290964168|emb|CBG40013.1| putative S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Helicobacter mustelae 12198]
          Length = 303

 Score =  133 bits (334), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 99/304 (32%), Positives = 169/304 (55%), Gaps = 20/304 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           H+PVLL +V+ +       +I+D T G GG+S++  +   ++  I +D+D  A +   + 
Sbjct: 6   HIPVLLHEVLDIFKDIKEGIIIDCTLGFGGHSKALLEQNQSIRIIGIDKDKDARAYATKL 65

Query: 78  MRDYKEQFSLFQATF-SQLQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +  +KE+F    + F  Q++  +   G  + GV+ D+GVSS Q+D   +GF F+ S  LD
Sbjct: 66  LSPFKERFCCVASGFGEQIEPLIAQYGREIKGVLADIGVSSYQLDTPKKGFGFE-SEVLD 124

Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM     ISA  ++N  +   L R+    GE +++ ++A  + + R    F   +  ++
Sbjct: 125 MRMDNDAHISAKTILNHYSAFALERVFREYGELRESKKLAQLLSQERTRTDFGDPKTFNA 184

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
            ++   +F +N +I P    +QALRI VN E+EEL + L  A+K   A   L V++FHSL
Sbjct: 185 FLK--AHF-RNPKILPLV--YQALRIEVNGELEELERLLLHAQKLKDAR--LCVITFHSL 237

Query: 254 EDRLVKKFFASRSGKVM----AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           EDR++K+   S +   +    A++    ++    V   +TKK ++P+QE++  N RSRSA
Sbjct: 238 EDRILKQALKSYTKSCICPLEALKCTCGNHHQKGVL--LTKKPIIPSQEEIKRNPRSRSA 295

Query: 310 KLRA 313
           K+RA
Sbjct: 296 KMRA 299


>gi|166033390|ref|ZP_02236219.1| hypothetical protein DORFOR_03116 [Dorea formicigenerans ATCC
           27755]
 gi|166027747|gb|EDR46504.1| hypothetical protein DORFOR_03116 [Dorea formicigenerans ATCC
           27755]
          Length = 358

 Score =  132 bits (332), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 94/312 (30%), Positives = 159/312 (50%), Gaps = 28/312 (8%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCG 74
           G H+ + +++++  L+  PG+  LDAT G GG++R   +      ++  LD DP      
Sbjct: 60  GMHISICVQEILDFLDIKPGQHGLDATLGYGGHTRKMLEKLEGHGHIYGLDVDPIESEKT 119

Query: 75  QETMRD--YKEQ-FSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           ++ +RD  Y E   ++    F+ +     + G  D V+ DLGVSSMQID  +RGF+++  
Sbjct: 120 KKRLRDLGYGEDILTVKLCNFADIDKVAEEHGKFDFVLADLGVSSMQIDNPERGFTYKFD 179

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK-RRQSAPFQTT 188
           GPLD+RM+   G SA+  +   + +++  +L    +E  A+ I   ++  R+     +TT
Sbjct: 180 GPLDLRMNPQKGESAAQRLKSMDAEEIEGMLVENSDEPYAAEITEVLMNWRKHGKSPETT 239

Query: 189 QDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
            +L   I++ + F      K        R+FQALRI VN E E L   L    + +  GG
Sbjct: 240 TELKEAIEEALTFLPEKEKKEAVKKSCQRTFQALRIDVNQEFEVLYAFLDKLPQVMNPGG 299

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            + +++FHS EDRLVK+ F  + GK               ++  I K V+ P+ ++ A N
Sbjct: 300 RIAILTFHSGEDRLVKRAF--KEGK------------KAGIYSEICKDVIRPSAQECARN 345

Query: 304 RRSRSAKLRAGM 315
            R++  K+R  +
Sbjct: 346 PRAKCTKMRWAI 357


>gi|261414983|ref|YP_003248666.1| S-adenosyl-methyltransferase MraW [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261371439|gb|ACX74184.1| S-adenosyl-methyltransferase MraW [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302325451|gb|ADL24652.1| S-adenosyl-methyltransferase MraW [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 337

 Score =  132 bits (332), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 92/304 (30%), Positives = 153/304 (50%), Gaps = 12/304 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H PV+L++ +  LN  P     D T G GG+S +  +       + A DRD  AV    +
Sbjct: 30  HDPVMLKECLEGLNIKPNGTYSDCTLGGGGHSYAIAQELNSEGTLHAFDRDDEAVQFATK 89

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
            +     +F +    FS+L + +    +DGV++DLG+SS Q+D   RGF+F    PLD+R
Sbjct: 90  RLAGVAPKFIVHPVPFSELGNEIEPNSLDGVLYDLGISSHQVDDSSRGFTFVGDNPLDLR 149

Query: 137 MS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M     +SA + +   +  D    L    +  +A ++A  I ++      +    L S I
Sbjct: 150 MDRRENVSAQEWLRSVSEDDFAAALRKNADMDRAFKLATRIKEKVGEITTEGRDVLPSDI 209

Query: 196 QKTVYFSKNNRIHPAT----RSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           +  V     ++   A     R FQA+R+ VN E++++   LR+A   LK GG L+V+S+H
Sbjct: 210 KAVVEAVFPDKRREANSLLARVFQAIRMEVNGELKQIEDSLRAAVDCLKVGGRLVVMSYH 269

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP---SNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           S+EDR VK+  A+   K       +P      +    + + +K ++P+ +++  N R+RS
Sbjct: 270 SVEDRCVKE-TAAEFEKACICPENLPVCMCGGNHQRLKKVNRKPILPSADEINRNSRARS 328

Query: 309 AKLR 312
           AKLR
Sbjct: 329 AKLR 332


>gi|225009958|ref|ZP_03700430.1| S-adenosyl-methyltransferase MraW [Flavobacteria bacterium
           MS024-3C]
 gi|225005437|gb|EEG43387.1| S-adenosyl-methyltransferase MraW [Flavobacteria bacterium
           MS024-3C]
          Length = 308

 Score =  132 bits (331), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 109/303 (35%), Positives = 160/303 (52%), Gaps = 23/303 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MG--SNVIALDRDPFAVSCGQE 76
           H PV+L++ +A L   P  V +D TFG GG+S+   + +G    + A D+D  A++    
Sbjct: 7   HNPVMLQETVAGLAIDPKGVYVDVTFGGGGHSKEILRQLGPQGRLFAFDQDKDALA---N 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           T+ D +  F+L    F  ++ ++   G   V G++ D GVSS Q D G RGFS +  G L
Sbjct: 64  TLADAR--FTLIPENFRFIKQFLRFHGIKQVHGILADFGVSSHQFDEGSRGFSTRFEGDL 121

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+ SG I+A +VV      DL  +    G+ + +  IA AI+  R+  P +TT  L 
Sbjct: 122 DMRMNQSGAITAKEVVGSYAHDDLANMFFQYGDLRNSKAIAAAIIAFREIQPIETTAQLK 181

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
             +   +    + +I      +QA+RI VN EI+ + + L      L  GG L V+S+HS
Sbjct: 182 EALAPFLKGFNDAKILAPI--YQAIRIEVNQEIQVIKEFLAQVPDLLFPGGRLSVLSYHS 239

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV---VVPTQEDVAFNRRSRSA 309
           LEDRLVK+F   R+G+        P       F+   KKV    +PT+E+   N RSRSA
Sbjct: 240 LEDRLVKRFI--RAGQFEGE----PEKDIFGHFEVPLKKVGGLQIPTKEEQRINTRSRSA 293

Query: 310 KLR 312
           KLR
Sbjct: 294 KLR 296


>gi|317498357|ref|ZP_07956653.1| MraW methylase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316894362|gb|EFV16548.1| MraW methylase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 398

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/313 (30%), Positives = 163/313 (52%), Gaps = 28/313 (8%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCG 74
           G H+ + +++++   +  PG+  LDAT G GG++R   +      ++ ALD DP      
Sbjct: 98  GMHISICVKEILEFFDIQPGQKGLDATLGYGGHTRKMLEKLQGKGHIYALDVDPIESVKT 157

Query: 75  QETMRDY---KEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           ++ + D    ++  ++    F+ +     + G  D ++ DLGVSSMQID  +RGFS++  
Sbjct: 158 EKRLHDAGFGEDILTIKHINFANIDQVAEEVGPFDFILADLGVSSMQIDNPERGFSYKFE 217

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIA-HAIVKRRQSAPFQTT 188
           GPLD+R++   GISA++ +      +   +L    +E  A +IA   +   ++    +TT
Sbjct: 218 GPLDLRLNPEKGISAAERLEDITKAEFEGMLIENADEPYAKQIAKETVATMKRGKKIKTT 277

Query: 189 QDLSSLIQKTVYFSKNNRIHPAT-----RSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
            DL  +I++ + F        A      R+FQALRI VN+E E L + L     AL  GG
Sbjct: 278 TDLKDVIERALNFLPEKERKEAVKKSCQRTFQALRIDVNSEFEVLEELLEKLPDALAPGG 337

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            + +++FHS EDRLVK  F  + GK +             ++  + K V+ P++E+ A N
Sbjct: 338 KVAILTFHSGEDRLVKHAF--KYGKKV------------GIYSDVAKDVIRPSKEECAQN 383

Query: 304 RRSRSAKLRAGMR 316
            R++S K+R  ++
Sbjct: 384 GRAKSTKMRWAIK 396


>gi|296124253|ref|YP_003632031.1| S-adenosyl-methyltransferase MraW [Planctomyces limnophilus DSM
           3776]
 gi|296016593|gb|ADG69832.1| S-adenosyl-methyltransferase MraW [Planctomyces limnophilus DSM
           3776]
          Length = 378

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 91/314 (28%), Positives = 161/314 (51%), Gaps = 28/314 (8%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCG 74
           G H P+++++++ +L P  G+  +D T G GG+++   +       ++ +D DP  +   
Sbjct: 77  GTHRPIMVDEILQVLAPQAGERGIDCTLGFGGHAQQLLRAIQPDGCLLGIDADPIELPKT 136

Query: 75  QETMRDY---KEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
           +  +R      E   + +  F+ L   +P     G D ++ DLG+SSMQID   RGF+F+
Sbjct: 137 EARLRSAGFPAETLMVQRTNFAALPGLIPAFLPGGADFLMADLGLSSMQIDDPARGFTFK 196

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
              PLDMRM+ S G SA++ + + + + L ++L    +E  A  +A  ++  +Q + F T
Sbjct: 197 VDAPLDMRMNPSRGPSAAEFLAKIDERGLAKLLEDAADEPCAEPLARGLITAQQISAFIT 256

Query: 188 TQDLSSLIQKTVY----FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
           T  L+  +++ +       + +      R FQA+RI VN+E   L   L+S  + +K GG
Sbjct: 257 TGQLAEAVRRVLATIGSLDEEDVSSTIRRVFQAIRIAVNDEFSTLDILLKSIPQCVKPGG 316

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            + +++FHS EDR VKK F +                   V++ I+ +V+  T ++   N
Sbjct: 317 RIAILTFHSGEDRRVKKAFQAGLAS--------------GVYREISSEVMRATPQERHDN 362

Query: 304 RRSRSAKLRAGMRT 317
            RS  AKLR  +R+
Sbjct: 363 PRSIPAKLRWAIRS 376


>gi|167756448|ref|ZP_02428575.1| hypothetical protein CLORAM_01981 [Clostridium ramosum DSM 1402]
 gi|167703856|gb|EDS18435.1| hypothetical protein CLORAM_01981 [Clostridium ramosum DSM 1402]
          Length = 362

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 94/314 (29%), Positives = 159/314 (50%), Gaps = 28/314 (8%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSC 73
           +G H+ +++++++  L+   G++ LD T G GG++    +      ++ ALD DP     
Sbjct: 62  VGMHLSIMVDEILEFLDIQEGQIGLDCTLGYGGHTLKMLECLNYTGHMYALDIDPIESIK 121

Query: 74  GQETM--RDYKEQ-FSLFQATFSQLQDYVPDKGV-DGVVFDLGVSSMQIDCGDRGFSFQK 129
            +E +  + Y E   ++    F  +     + G+ D V+ DLGVSSMQID  +RGFS++K
Sbjct: 122 TKERLLGKGYGEDVLTIKNCNFKDIDIISKEVGLFDFVLADLGVSSMQIDNPERGFSYKK 181

Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF-QT 187
            GPLD+R++   G+ AS  + + N   L ++     +E  A  IA  I    +S     T
Sbjct: 182 EGPLDLRLNPQKGVPASIKLQELNRDQLEQLFIENSDEPYAKEIARNIDSYLKSGQLITT 241

Query: 188 TQDLSSLIQKT-----VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           T  L  +I+K+     V   K+     A R FQALRI VN E + L + +      LK G
Sbjct: 242 TTQLYKIIEKSLSSIPVTERKDIVKKSAARVFQALRIEVNREFDVLIEFMDKLPTILKPG 301

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G + +++FHS EDR+VKK F                  +  ++  + + V+ P++E+   
Sbjct: 302 GRVAILTFHSGEDRIVKKAFKEMK--------------NLGIYSDVARNVIRPSKEECHM 347

Query: 303 NRRSRSAKLRAGMR 316
           N R++S K+R  ++
Sbjct: 348 NSRAKSTKMRWAIK 361


>gi|291561054|emb|CBL39854.1| S-adenosyl-methyltransferase MraW [butyrate-producing bacterium
           SSC/2]
          Length = 352

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 94/313 (30%), Positives = 158/313 (50%), Gaps = 28/313 (8%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCG 74
           G H+ + +++++   +  PG+  LDAT G GG++R   +      ++ ALD DP      
Sbjct: 52  GMHISICVKEILEFFDIQPGQKGLDATLGYGGHTRKMLEKLQGKGHIYALDVDPIESVKT 111

Query: 75  QETMRDY---KEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           ++ + D    ++  ++    F+ +     + G  D ++ DLGVSSMQID  +RGFS++  
Sbjct: 112 EKRLHDAGFGEDILTIKHINFANIDQVAEEVGPFDFILADLGVSSMQIDNPERGFSYKFE 171

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIA-HAIVKRRQSAPFQTT 188
           GPLD+R++   GISA++ +      +   +L    +E  A +IA   +   ++    +TT
Sbjct: 172 GPLDLRLNPEKGISAAERLEDITKAEFEGMLIENADEPYAKQIAKETVATMKRGKKIKTT 231

Query: 189 QDLSSLIQKTVYFSKNNRIHPAT-----RSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
            DL  +I++ + F        A      R+FQALRI VN+E E L + L     AL  GG
Sbjct: 232 TDLKDVIERALNFLPEKERKEAVKKSCQRTFQALRIDVNSEFEVLEELLEKLPDALAPGG 291

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            + ++ FHS EDRLVK              H         ++  I K V+ P++E+ A N
Sbjct: 292 KVAILIFHSGEDRLVK--------------HAFKYGKKAGIYSDIAKDVIRPSKEECAQN 337

Query: 304 RRSRSAKLRAGMR 316
            R++S K+R  ++
Sbjct: 338 GRAKSTKMRWAIK 350


>gi|12045077|ref|NP_072888.1| S-adenosyl-methyltransferase MraW [Mycoplasma genitalium G37]
 gi|255660224|ref|ZP_05405633.1| S-adenosyl-methyltransferase MraW [Mycoplasma genitalium G37]
 gi|1351515|sp|P47464|RSMH_MYCGE RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|3844825|gb|AAC71443.1| S-adenosyl-methyltransferase MraW [Mycoplasma genitalium G37]
 gi|166078718|gb|ABY79336.1| S-adenosyl-methyltransferase MraW [synthetic Mycoplasma genitalium
           JCVI-1.0]
          Length = 309

 Score =  129 bits (325), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 97/303 (32%), Positives = 155/303 (51%), Gaps = 18/303 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSNVIAL-DRDPFAVS-CGQE 76
           H  VL+ +VI  LN  P    LD T G  G+S+    K+ +  + + D D  +++ C + 
Sbjct: 8   HQSVLINEVIHNLNINPCGNYLDLTAGFAGHSQKILEKLTTGTLTINDVDKESINFCQKL 67

Query: 77  TMRDYK-----EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
             ++       + F+ F     QL         DG++ DLGVSS Q++  +RGFSF+  G
Sbjct: 68  FFKNNNVVIIHDNFANFPVHLKQLSI----TKFDGILMDLGVSSHQLNQPNRGFSFKNDG 123

Query: 132 PLDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
           P+DMRM  S    +A  V+     + L+ IL   G+ K    IA  + K  Q+    TT 
Sbjct: 124 PIDMRMDQSNQKNTALTVLKNLTEQKLSLILKKYGDIKHPKPIAIGLKKAVQTEKNLTTT 183

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L+ ++++    F K    +   + FQA+RI++N+EI  L   L      LK     +V+
Sbjct: 184 QLAKVVKECATGFEKYQSRNYLAKVFQAIRIYLNDEITNLKTALTFIPNLLKNNSRFLVI 243

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
            FHS+E+++V+ F A  +  +      +P    PA +Q ITKK ++P+Q+++  N RSRS
Sbjct: 244 VFHSIEEKIVRNFIAKLTSFIQP--EALPIKLTPA-YQLITKKPILPSQKELELNPRSRS 300

Query: 309 AKL 311
           AKL
Sbjct: 301 AKL 303


>gi|255076257|ref|XP_002501803.1| MraW methylase/RNA recognition motif protein [Micromonas sp.
           RCC299]
 gi|226517067|gb|ACO63061.1| MraW methylase/RNA recognition motif protein [Micromonas sp.
           RCC299]
          Length = 744

 Score =  129 bits (324), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 103/336 (30%), Positives = 158/336 (47%), Gaps = 27/336 (8%)

Query: 12  AIHHTIGDHVPVLL-EKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRD 67
           A     G H P +L E + AL+ P P    +D TFG GG++R     +G N  + A D D
Sbjct: 354 ATEQAFGTHTPAMLRETIAALVKPDPNGTYVDGTFGRGGHTRGILAALGPNGRLHAFDMD 413

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV--DGVVFDLGVSSMQIDCGDRGF 125
           P A+   ++ +     +F++  A F  +   +   GV   GV  DLG+SS Q D   RGF
Sbjct: 414 PEAIKEAKK-LEAEDSRFTIHHAPFGCMDTVLKPLGVTCSGVFLDLGISSPQFDDESRGF 472

Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQ---ASRIAHAIVKRRQ 181
             ++ GPLD+R   + G+ AS+ + + +  +L RIL   GE      A RIA A+     
Sbjct: 473 RPEQDGPLDLRFDVTQGVPASEFLERVDRDELVRILHEYGETADPVAARRIADAVCLAVA 532

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
                +T    + +       +   +HPA  +FQALRI +N E +E+ +G+R+A + +  
Sbjct: 533 EERLPSTTKAFAALVAAAKGKEYQAMHPAKLTFQALRIHLNQEFDEMRRGMRAAAEVMID 592

Query: 242 GGLLIVVSFHSLEDRLVKKFF--------ASRSGKVMAVRHMIPSNAHPAVFQSITKKVV 293
           GG L V+++   E  ++  F              K M   H    NA P V+        
Sbjct: 593 GGRLGVLTWKHSECAILVDFHRHFEVVQPTQPLLKWMRSNHPEKENALPTVWGLTMDDAQ 652

Query: 294 VPTQEDVAFNRRSRSA------KLRAGMR--TVERS 321
            P++ ++  N RSRSA      K+ AG R   VER+
Sbjct: 653 RPSEREMRDNSRSRSAILHVLRKVDAGRRLADVERA 688


>gi|167768055|ref|ZP_02440108.1| hypothetical protein CLOSS21_02599 [Clostridium sp. SS2/1]
 gi|167710384|gb|EDS20963.1| hypothetical protein CLOSS21_02599 [Clostridium sp. SS2/1]
          Length = 352

 Score =  129 bits (324), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 94/313 (30%), Positives = 162/313 (51%), Gaps = 28/313 (8%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCG 74
           G H+ + +++++   +  PG+  LDAT G GG++R   +      ++ ALD DP      
Sbjct: 52  GMHISICVKEILEFFDIQPGQKGLDATLGYGGHTRKMLEKLQGKGHIYALDVDPIESVKT 111

Query: 75  QETMRDY---KEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           ++ + D    ++  ++    F+ +     + G  D ++ DLGVSSMQID  +RGFS++  
Sbjct: 112 EKRLHDAGFGEDILTIKHINFANIDQVAEEVGPFDFILADLGVSSMQIDNPERGFSYKFE 171

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIA-HAIVKRRQSAPFQTT 188
           GPLD+R++   GISA++ +      +   +L    +E  A +IA   +   ++    +TT
Sbjct: 172 GPLDLRLNPEKGISAAERLEDITKAEFEGMLIENADEPYAKQIAKETVATMKRGKKIKTT 231

Query: 189 QDLSSLIQKTVYFSKNNRIHPAT-----RSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
            DL  +I++ + F        A      R+FQALRI VN+E E L + L     AL  GG
Sbjct: 232 TDLKDVIERALNFLPEKERKEAVKKSCQRTFQALRIDVNSEFEVLEELLEKLPDALAPGG 291

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            + +++FHS EDRLVK  F  + GK +             ++  + K V+ P++E+   N
Sbjct: 292 KVAILTFHSGEDRLVKHAF--KYGKKV------------GIYSDVAKDVIRPSKEECTQN 337

Query: 304 RRSRSAKLRAGMR 316
            R++S K+R  ++
Sbjct: 338 GRAKSTKMRWAIK 350


>gi|302669504|ref|YP_003829464.1| S-adenosyl-methyltransferase MraW family protein [Butyrivibrio
           proteoclasticus B316]
 gi|302393977|gb|ADL32882.1| S-adenosyl-methyltransferase MraW family [Butyrivibrio
           proteoclasticus B316]
          Length = 347

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/313 (30%), Positives = 152/313 (48%), Gaps = 28/313 (8%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCG 74
           G H+ +++++++ +L   PG+  LD T G GG++R   +  +    +  LD DP   +  
Sbjct: 48  GMHISIMVKEILEVLKIQPGEQGLDCTLGYGGHTRKMLEQLTGKGCIYGLDVDPIESAKT 107

Query: 75  QETMRDY---KEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            E +R+    +  F      F+ +     + G  D V+ DLGVSSMQID   RGFS++  
Sbjct: 108 VERLRNAGFDENAFKFRLINFANIDKVAEEAGKFDFVLADLGVSSMQIDDPKRGFSYKID 167

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK-RRQSAPFQTT 188
           GPLD+R+    G SA++ ++     +   +L    +E  A  IA  +    ++  P  TT
Sbjct: 168 GPLDLRLDPEHGESAAERLHNITRDEFVGMLVENSDEPYAEEIADKVFNLMKKGDPMDTT 227

Query: 189 QDLSSLIQKTVY----FSKNNRIHPA-TRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
             L S I+  ++      K+  I  +  R FQALRI VN+E E L   L      L  G 
Sbjct: 228 TALRSAIENALWKLPKEEKDQAIKKSCARVFQALRIDVNSEFEVLYSFLEKLPGILNPGA 287

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            + +++FHS EDRLVKK F                     +F  I++ V+ P+ E+   N
Sbjct: 288 RVAILTFHSGEDRLVKKAFK--------------ECKKAGLFSEISEDVIRPSAEECRVN 333

Query: 304 RRSRSAKLRAGMR 316
            RS+S K+R  ++
Sbjct: 334 PRSKSTKMRWAIK 346


>gi|26553777|ref|NP_757711.1| methyltransferase [Mycoplasma penetrans HF-2]
 gi|30173058|sp|Q8EW81|RSMH_MYCPE RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|26453784|dbj|BAC44115.1| methyltransferase [Mycoplasma penetrans HF-2]
          Length = 312

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/248 (33%), Positives = 127/248 (51%), Gaps = 9/248 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+ V LE  +  LN    K+ +D TFG GG+S    K  S+   +   D D  A      
Sbjct: 9   HISVRLEDAVDSLNIQKDKIYVDCTFGRGGHSFEILKRLSSKGKLFVFDLDLDAKKYFDN 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
               +K  F   Q  F  L++ +       VDG +FD GVSS  +D  +RGFSF+    L
Sbjct: 69  NFSKFKNCF-FIQDNFKNLKENLAKFDISKVDGFLFDFGVSSPMLDNANRGFSFKLDARL 127

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+ +  +SA +V+N  + + L +I    GE +    +   I+K R + P +TT +L 
Sbjct: 128 DMRMNQNQELSAYEVINNYSKEKLIQIFWKYGEIRNPVPVVDEIIKYRSNKPIETTLELV 187

Query: 193 SLIQK-TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+K T    +  + H A   FQA+RI VN+E+  + + L  A   L   G ++ +SFH
Sbjct: 188 DIIRKRTPIKIQREKKHFARTYFQAIRIEVNDELNSIRKALSDALNMLSKNGRIVTISFH 247

Query: 252 SLEDRLVK 259
           SLE++ +K
Sbjct: 248 SLEEKEIK 255


>gi|298711101|emb|CBJ32330.1| S-adenosyl-methyltransferase MraW [Ectocarpus siliculosus]
          Length = 332

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 98/329 (29%), Positives = 145/329 (44%), Gaps = 88/329 (26%)

Query: 27  KVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKE 83
           +V+  L   P  V +D T G GG+S +       G+ VI LDRDP A+      +    E
Sbjct: 5   EVLEWLITKPDGVYVDCTLGGGGHSAALLSALGAGARVIGLDRDPDALREASARLAAEAE 64

Query: 84  --QFSLFQATFSQLQDYV-------------PDKG-------------------VDGVVF 109
             +F   ++ F+ +   V             P+                     VDG++ 
Sbjct: 65  VGRFQAVRSNFAAVGRAVRECELMLQQPPLAPEASTAPAPAAGVPPRTTSAGPLVDGILV 124

Query: 110 DLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSG---------------------------- 141
           DLGVSS QID   RGFSF   GPLDMRM  +G                            
Sbjct: 125 DLGVSSHQIDDEARGFSFSADGPLDMRMEGTGDGDSVGERSGFGGVASTSREHEDRAVEK 184

Query: 142 ------------------ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
                             +SA+DVVN A+  ++  ++   G+EK++++IA AIV+ R   
Sbjct: 185 GGRGEGGGGGDGRGGGGGVSAADVVNFADESEIREMVWRYGDEKRSTKIARAIVENR--- 241

Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
           P  TT  L+ ++ +        R+    R FQALRI VN E++ L   L  A+  ++ GG
Sbjct: 242 PIATTGQLAEVVGRCA--PPKERVKTLARVFQALRIEVNGELDALEALLEQAKHLVRPGG 299

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAV 272
            L+++S+HSLEDR VK+  A+ + K  A 
Sbjct: 300 RLLILSYHSLEDRRVKRVLATGNLKFFAT 328


>gi|205355535|ref|ZP_03222306.1| hypothetical protein Cj8421_0691 [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|205346769|gb|EDZ33401.1| hypothetical protein Cj8421_0691 [Campylobacter jejuni subsp.
           jejuni CG8421]
          Length = 236

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 86/231 (37%), Positives = 129/231 (55%), Gaps = 11/231 (4%)

Query: 89  QATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS-CSGISASD 146
           Q+ FS++ + +  K  + G++ D+GVSS Q+D  +RGFS   S  LDMRM+  S ISA +
Sbjct: 2   QSNFSEVLEKISHKEELRGILADIGVSSFQLDNNERGFSVN-SDFLDMRMNQNSKISAYE 60

Query: 147 VVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNR 206
           ++N    + LT I    GE   A  IA  I   R   P ++ ++L  +I K     +N+R
Sbjct: 61  IINTYTKEQLTSIFKDYGELHDAHFIAEKICLERSKNPIKSAKELYQIIGKG---KQNHR 117

Query: 207 -IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASR 265
            I  AT +FQA+RI VN E++ L   L   E       +L ++SFHSLEDR+VK+FF   
Sbjct: 118 KISKATLAFQAIRIEVNQELKVLKDFLEHLENLKPKNCILAIISFHSLEDRIVKQFFKKW 177

Query: 266 SGKVMAVRHMIPS---NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           S   +    ++     N H ++ Q ITKK +  ++E++  N RS  AK+RA
Sbjct: 178 SKNCICNEKIMRCECGNNH-SLGQIITKKAISASKEELLKNSRSSCAKMRA 227


>gi|145349365|ref|XP_001419106.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579337|gb|ABO97399.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 254

 Score =  123 bits (308), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 85/254 (33%), Positives = 133/254 (52%), Gaps = 13/254 (5%)

Query: 20  HVPVLL-EKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
           H P +L E + AL+ P    V +D TFG GG++R      S    + A D DP A+  G+
Sbjct: 1   HTPAMLAETIAALVAPDRSGVYVDGTFGRGGHTRGILAALSAEGRLHAFDMDPEAIKVGK 60

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGV--DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           E  R+   +F +  A F  + D +   GV   GV  DLG+SS Q D   RGF  ++ GPL
Sbjct: 61  ELERE-DSRFKIHHAPFGCMADVLRPLGVKPSGVFLDLGISSPQFDDSSRGFRPEQDGPL 119

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQ---ASRIAHAIVKRRQSAPF-QTT 188
           D+R     G+ AS+ +   + ++L R++   GE      A RI  AIV  R++     TT
Sbjct: 120 DLRFDVERGVPASEYLRLVSREELRRVIHEYGETTDPIAARRITDAIVLARENGSLPSTT 179

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           ++ ++L+ K     +   +HPA  +FQALRI +N E +E+ +G+ +A   +   G L ++
Sbjct: 180 KEFAALVAKA-KGKEYQMMHPAKLTFQALRIALNQEFDEMRRGMHAAFDIMPEHGRLGIL 238

Query: 249 SFHSLEDRLVKKFF 262
           ++   E  +V  FF
Sbjct: 239 TWKHSECAIVVDFF 252


>gi|241998832|ref|XP_002434059.1| SAM dependent methyltransferase, putative [Ixodes scapularis]
 gi|215495818|gb|EEC05459.1| SAM dependent methyltransferase, putative [Ixodes scapularis]
          Length = 368

 Score =  122 bits (305), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 104/350 (29%), Positives = 158/350 (45%), Gaps = 43/350 (12%)

Query: 7   KTMSSAIHHTIGD---HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV-- 61
           K MSSA+     +   H PV+L +VI  LN   G+ ++D TFGAGG+S++      +V  
Sbjct: 20  KQMSSAVSQLETERFTHTPVMLTEVIDALNVQDGQTLIDFTFGAGGHSKALLSAAKDVKV 79

Query: 62  IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSM 116
             +DRDP A         +Y  +     + FS++++ +   GV     DG + D G SSM
Sbjct: 80  FGVDRDPTAYRAACSIATEYPGRLFPVLSRFSEVEETLEQLGVQPNSVDGAILDCGCSSM 139

Query: 117 QIDCGDRG-------FSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQA 169
           Q D   RG       F       LD     S      ++ +++V    +I         A
Sbjct: 140 QFDDPSRGSIHGIMKFPLNLCVKLDCLRHPSSYVIGTLLYKSSVDIKKQIQKYFSNASTA 199

Query: 170 SRIAHAIVK---------RRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIF 220
             +   + +         R QS        + SL ++     +    H AT++F ALRIF
Sbjct: 200 ETLCGNVFESLIVLSRNERHQSWVGAGQLYIGSLGERRDMLGRPT--HLATKTFMALRIF 257

Query: 221 VNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFAS------RSGKVMAVRH 274
           VN+E+ EL   L    + L+ GG L V+SFHSLEDRLVK+ F         SG + A ++
Sbjct: 258 VNDELNELNHALTVGRRLLRPGGRLAVLSFHSLEDRLVKRHFQGIDLDEPVSGSI-AQKY 316

Query: 275 MIPSNAHPAVFQSITKKVV--------VPTQEDVAFNRRSRSAKLRAGMR 316
              +  H      + ++ V        +P+ ++V  N RSRSAKLR   +
Sbjct: 317 RNAATWHGREEMEVARRRVWEPIGTLGLPSAQEVERNPRSRSAKLRVAAK 366


>gi|330981226|gb|EGH79329.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 186

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 69/181 (38%), Positives = 109/181 (60%), Gaps = 9/181 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H+ VLLE+ +  L        LD TFG GG+SR    ++G +  ++  D+DP A++ GQ 
Sbjct: 7   HITVLLEEAVEALAVRADGCYLDGTFGRGGHSRLILSQLGPDGRLLGFDKDPQAIATGQ- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            +     +F + Q +F++L     ++G    V G++ DLGVSS Q+D  +RGFSF   GP
Sbjct: 66  ALAAEDGRFVIVQRSFAELGSETQERGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDGP 125

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G+SA++ +  A  +++ R+    GEE+ A R+A+A+V RR+  PF+ T DL
Sbjct: 126 LDMRMDPTRGVSAAEFIATAPAEEIARVFKEYGEERFAKRMANAVVARREVQPFERTADL 185

Query: 192 S 192
           +
Sbjct: 186 A 186


>gi|223993323|ref|XP_002286345.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220977660|gb|EED95986.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 495

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 117/391 (29%), Positives = 165/391 (42%), Gaps = 118/391 (30%)

Query: 38  KVILDATFGAGGYSRSF------CKMGSNVIALDRDPFAVSCGQETMRDY---------- 81
           ++ +D T G GG+S++       C +   +I  D DP A+S     + DY          
Sbjct: 112 RLFIDGTLGGGGHSQAILQQLRPCDV---LIGCDVDPDALSTASNRLVDYLGTREYILGK 168

Query: 82  ----------------KEQFSLFQATFSQL--------------------QDYVPD---- 101
                           +  F   Q+ F  L                     D + D    
Sbjct: 169 SSTVDAEEMACQWEEGRPMFIPVQSNFRNLINVLSKVRHPVSGRLLLGSRDDSIGDGQKD 228

Query: 102 -----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS------------CSGISA 144
                 G +G++ DLGVSS QID G+RGF+F K GPLDMRMS             S ++A
Sbjct: 229 AVEFPNGANGMLLDLGVSSHQIDTGERGFAFMKEGPLDMRMSGNTPQISTSATIGSSLTA 288

Query: 145 SDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK-TVYFSK 203
           +D+ N+ +   +  IL   G+E +A RIA AI+  R   P  TT DL   I   T  F++
Sbjct: 289 ADICNEFDEPTIIDILSTYGDEPRAKRIASAIIASR---PLYTTTDLVHAINSVTPTFAR 345

Query: 204 NNR---IHPATRSFQALRIFVNNEIEELAQGL-RSAEKAL-KAGGL-------------L 245
             R   I  + R FQALRI VN E   L   L R A   L ++GGL             L
Sbjct: 346 QKRAGLIATSARVFQALRIVVNEEDGALKDVLERVAPWVLCRSGGLMNVGDDEKRDDGIL 405

Query: 246 IVVSFHSLEDRLVKKFF----------ASRSGKVMAVRHMIPS--NAHPAVFQSITKKVV 293
            V+S+HS+ED++ K+             S+ G V+  R M  +  N    V  + +    
Sbjct: 406 AVLSYHSMEDKMAKRVMRDGSVDFLDGGSKGGSVLE-RDMFGNVINGDGIVDDAKSHLPF 464

Query: 294 VP-------TQEDVAFNRRSRSAKLRAGMRT 317
            P       T E++A N R+RSA LR G+R 
Sbjct: 465 EPVGKPRKATDEEIAVNSRARSATLRVGIRN 495


>gi|123225262|emb|CAM17437.1| methyltransferase 5 domain containing 1 [Mus musculus]
 gi|123231530|emb|CAM24680.1| methyltransferase 5 domain containing 1 [Mus musculus]
          Length = 230

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 67/159 (42%), Positives = 94/159 (59%), Gaps = 11/159 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCGQET 77
           H+PV++++V+  L P  G+V LD TFG+GG++R+  +   +V+  ALDRDP A +  ++ 
Sbjct: 72  HIPVMVDQVVHCLAPQKGQVFLDMTFGSGGHTRAILQKEPDVMVYALDRDPVAYAIAEQL 131

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            R Y  Q       FSQ +  +   GV     DG++ DLG SSMQ+D  +RGFS +K GP
Sbjct: 132 SRLYPTQIQALLGQFSQAEALLMKAGVQPGTIDGILMDLGCSSMQLDAPERGFSLRKDGP 191

Query: 133 LDMRMSCSGI----SASDVVNQANVKDLTRILGILGEEK 167
           LDMRM         +ASDVVN  + + L  IL   GEEK
Sbjct: 192 LDMRMDGDRYPDTPTASDVVNALDQQALASILRAYGEEK 230


>gi|323455669|gb|EGB11537.1| mraW S-adenosyl-L-methionine-dependent methyltransferase-like
           protein [Aureococcus anophagefferens]
          Length = 404

 Score =  119 bits (299), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 90/312 (28%), Positives = 153/312 (49%), Gaps = 27/312 (8%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRD--PFAVS 72
           G HVP+++ + +  L      V +D T G GG+S +       G+ ++ +DRD    A +
Sbjct: 106 GTHVPIMVAECLEHLRVGDAAVAVDCTLGYGGHSTALVAALPRGARLLGVDRDGEELAKT 165

Query: 73  CGQ--ETMRDYKEQFSLFQ--ATFSQLQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFS 126
             +  E  R    + +L Q  + ++ + D +  +G  VD ++ DLG SSMQ+D  +RGF+
Sbjct: 166 AARLAEAPRAASGEVTLEQMHSNYAAVGDELARRGLAVDALLADLGCSSMQVDDPERGFT 225

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           +++ GPLDMRM  S G +A+D + +++  D+        +  +      A+  RR   P 
Sbjct: 226 YKREGPLDMRMDTSRGETAADWLARSSTADVAAAFRTAADFGKRDARELAVAARRAPTPA 285

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            TT   +  ++      +        R+ QALR+ VN+E   L   L S   AL  GG  
Sbjct: 286 TTTA-FAERVRGVALEEETADDDAVKRAMQALRVAVNDEFASLDALLASLPDALAPGGRA 344

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           +V++FHS EDR VK+ F          +  + +N    V+ ++ ++ V  + E+   N R
Sbjct: 345 VVLTFHSGEDRRVKQAF----------KKGLAAN----VYSAVARRPVRASPEERRANSR 390

Query: 306 SRSAKLRAGMRT 317
           S   KLR  +R+
Sbjct: 391 SGCCKLRWCVRS 402


>gi|325915801|ref|ZP_08178101.1| putative S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325537984|gb|EGD09680.1| putative S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 218

 Score =  119 bits (298), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 78/187 (41%), Positives = 105/187 (56%), Gaps = 10/187 (5%)

Query: 154 KDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRS 213
           +D+  +L   GEE+Q+ RIA AIV RR   P   T  L+ LI  +V    +++ HPATRS
Sbjct: 21  RDIADVLWTYGEERQSRRIARAIVARRAEQPLLRTAQLADLI-ASVMPRGDSKTHPATRS 79

Query: 214 FQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVR 273
           FQA+RI++N E+++L  GL +A  ALK GG L V+SFHSLEDR+VK+F A R  K     
Sbjct: 80  FQAIRIYINRELDDLQAGLDAALDALKPGGRLAVISFHSLEDRIVKQFMA-RYAKAPPSN 138

Query: 274 HMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRSAKLRA----GMRTVERSIEDDSF 327
             +P  A P V   Q I+  +     E +  N R+RSA LR     GM   E  +   + 
Sbjct: 139 RRLP-EAQPFVPTLQLISGAIKADDAE-LNINPRARSAVLRVAEKLGMGNGESGMGKGNS 196

Query: 328 VHLPRLP 334
              PR P
Sbjct: 197 AAAPRFP 203


>gi|167752871|ref|ZP_02424998.1| hypothetical protein ALIPUT_01133 [Alistipes putredinis DSM 17216]
 gi|167659940|gb|EDS04070.1| hypothetical protein ALIPUT_01133 [Alistipes putredinis DSM 17216]
          Length = 183

 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/185 (41%), Positives = 104/185 (56%), Gaps = 5/185 (2%)

Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM+   G +A+D+VN  +   LTRILG  GE     ++A  IV+ R + P  TT DL +
Sbjct: 1   MRMNQRGGGTAADLVNTLDADALTRILGDWGEIDTPWKVAACIVRARTAQPILTTADLVA 60

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
            +       K +     T+ FQALRI VN E+E L   L  + K L+ GG L+V+S+HSL
Sbjct: 61  AVAPCT--PKKDESKFLTKLFQALRIEVNGEMEALKMALEQSLKVLRPGGRLVVISYHSL 118

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           EDRLVK F  S + +    +        P  F+ IT+K V P+ E++  N RSRSAKLRA
Sbjct: 119 EDRLVKNFLRSGNFEGRIEKDFFGKPETP--FEIITRKAVTPSSEELVRNPRSRSAKLRA 176

Query: 314 GMRTV 318
             + V
Sbjct: 177 AAKIV 181


>gi|300175849|emb|CBK21845.2| unnamed protein product [Blastocystis hominis]
          Length = 221

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/193 (36%), Positives = 105/193 (54%), Gaps = 12/193 (6%)

Query: 81  YKEQFSLFQATFSQLQDYVPDKG---------VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           Y+ + S+   TF+    Y+              +G + DLG +S+ +D  DRGFSFQK G
Sbjct: 12  YQSRVSIITDTFANTYKYLNQMNDSNASFATKANGTLLDLGFNSVHVDEADRGFSFQKDG 71

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILG-ILGEEKQASR-IAHAIVKRRQSAPFQTT 188
           PLDMR   S GI+A+D+VNQ +   LT I     GE  +  R +A  I +RR+   F  T
Sbjct: 72  PLDMRYDPSQGITAADLVNQLDRDSLTAIFAEYSGETYRTCRHVASVICRRREKQQFTNT 131

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            D ++ + K +   K +R  P T  FQALRI VNNE + L + + +    +  GG+ + +
Sbjct: 132 IDFATCVNKALESGKRSRKTPCTGIFQALRISVNNEYDHLNKFMETLPAMMAPGGISVFL 191

Query: 249 SFHSLEDRLVKKF 261
            F SLE ++VK++
Sbjct: 192 CFQSLEVQIVKRW 204


>gi|213025088|ref|ZP_03339535.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 165

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/162 (41%), Positives = 99/162 (61%), Gaps = 11/162 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN  P  + +D TFG GG+SR    ++G    ++A+DRDP A++  Q 
Sbjct: 7   HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAQ- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           T+ D +  FS+    FS L DYV ++     +DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 66  TINDPR--FSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIA 173
           LDMRM  + G SA++ +  A   D+  +L   GEE+ A RIA
Sbjct: 124 LDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIA 165


>gi|13537286|dbj|BAB40632.1| hypothetical protein [Listonella pelagia]
          Length = 189

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 73/186 (39%), Positives = 103/186 (55%), Gaps = 14/186 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H+ VLL + I  L   P    +D TFG GG+SR+   K+G N  + ++DRDP A++  Q+
Sbjct: 7   HISVLLNESIDGLAIKPDGTYIDGTFGRGGHSRTILSKLGENGRLFSIDRDPQAIAEAQK 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  +F++    FS + +Y         VDGV+ DLGVSS Q+D  +RGFSF K GP
Sbjct: 67  I---DDPRFTIIHGPFSGMAEYAERYDLVGKVDGVLLDLGVSSPQLDDAERGFSFMKDGP 123

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR---QSAPFQTT 188
           LDMRM   SG+  S  +  A + D+T ++   GE+K A RIA  IV  R   ++ P   T
Sbjct: 124 LDMRMDPTSGMPVSQWLMDAELDDITWVIREFGEDKHARRIAKGIVAYRENEENEPLTRT 183

Query: 189 QDLSSL 194
             L+ L
Sbjct: 184 GQLAKL 189


>gi|198431221|ref|XP_002121456.1| PREDICTED: similar to methyltransferase 5 domain containing 1
           [Ciona intestinalis]
          Length = 343

 Score =  116 bits (290), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 124/224 (55%), Gaps = 32/224 (14%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR------SFCKMGSNVIALDRDPFAVSC 73
           H+PV+ E++++ LN   G VI+D TFGAGG+++        CK    VIALDRD  A   
Sbjct: 36  HIPVMAEELVSGLNIKRGDVIIDMTFGAGGHTKFIMENYKHCK----VIALDRDEKAFEI 91

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQ 128
            Q+  + +K +       FS+L   + + G+     +  + D G SSMQ D  +RGFS  
Sbjct: 92  AQDLSKKFKGRIIPLLGKFSELDKLLSENGIVENSLNAALLDAGCSSMQFDQPERGFSLV 151

Query: 129 KSGPLDMRM----SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           + GPLDMRM    S   I+A+DVVN  + ++LT I+   G+E+ A  I+ +I++ R   P
Sbjct: 152 RDGPLDMRMDGNRSEGQITAADVVNNLDEEELTEIIYKYGDERNARNISSSIIENR---P 208

Query: 185 FQTTQDLSSLIQKTVYFSKNN---RIHPATRSFQALRIFVNNEI 225
             TT +L+ ++  ++ FS+ +   R+    R     R+F++N I
Sbjct: 209 ISTTLELARVV--SMAFSQTSDVFRVDSLGR-----RLFLDNLI 245


>gi|15639375|ref|NP_218824.1| hypothetical protein TP0384 [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189025617|ref|YP_001933389.1| hypothetical protein TPASS_0384 [Treponema pallidum subsp. pallidum
           SS14]
 gi|8134809|sp|O83399|RSMH_TREPA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262825951|sp|B2S2Y1|RSMH_TREPS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|3322662|gb|AAC65368.1| conserved hypothetical protein [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189018192|gb|ACD70810.1| hypothetical protein TPASS_0384 [Treponema pallidum subsp. pallidum
           SS14]
 gi|291059774|gb|ADD72509.1| S-adenosyl-methyltransferase MraW [Treponema pallidum subsp.
           pallidum str. Chicago]
          Length = 379

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 95/330 (28%), Positives = 149/330 (45%), Gaps = 53/330 (16%)

Query: 20  HVPVLLEKVIALLNPA--------------PGKVILDATFGAGGYSRSFCKMGSNVIAL- 64
           H PVL+++ + LL PA               G   +D T G GG++++F      + AL 
Sbjct: 29  HQPVLVQECLTLLEPAIVGISRGADSTRDGAGAFFIDGTLGDGGHTQAFLHAYPALRALG 88

Query: 65  -DRDPFAVSCGQETMRDYKEQFSLF----------------------QATFSQLQDYVPD 101
            + DP  ++  +  +  + ++                          +            
Sbjct: 89  VEIDPSMLARARARLTPFGKRLRYVLGWSDVFFASAYASAPASPATGRTAAGAAGVPGAY 148

Query: 102 KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRIL 160
                V+ DLG+S        RGFSF +   LDMR+   +  +A+D++N+     L ++ 
Sbjct: 149 PAPQAVLLDLGISFFHYRGAMRGFSFAEEHMLDMRLDPQASQTAADLLNRLPQARLAQLF 208

Query: 161 GILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI------QKTVYFSKNN-------RI 207
              GEE+ A RIA A+  +R+ APF + +  + ++       +T  F K         ++
Sbjct: 209 FEGGEERYARRIAQAVCAQRRQAPFCSARAFAEVVARVVPPMRTARFGKRRGVLGVLPKL 268

Query: 208 HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSG 267
           HPAT++FQALRI VN E+E L + L +A  AL  GG L V+SFHS EDR+VK  F   + 
Sbjct: 269 HPATKAFQALRIAVNRELERLPRLLTAAFTALAPGGRLAVISFHSREDRIVKVHFRHWAK 328

Query: 268 KV-MAVRHMIPSNAHPAVFQSITKKVVVPT 296
           +     R  I S    A    ITKK +VP+
Sbjct: 329 RCSCPARVPICSCGGVARASLITKKPLVPS 358


>gi|320169060|gb|EFW45959.1| methyltransferase [Capsaspora owczarzaki ATCC 30864]
          Length = 642

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/184 (36%), Positives = 102/184 (55%), Gaps = 19/184 (10%)

Query: 36  PGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS----CGQETMRDYKEQFSLF 88
           P  ++LDATFGAGG+S +  +     + + A+DRDP A+      GQ     +  +F   
Sbjct: 223 PPLILLDATFGAGGHSAALLRHAPPNTTLFAIDRDPDAIQRAEQLGQTNSLFHSSRFRPL 282

Query: 89  QATFSQLQDYVPDKG-----VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI- 142
           Q +FSQ++  V D+G     VDG++ D+G  S Q+D   RGFSF   GPLDMRM      
Sbjct: 283 QGSFSQMRQLVADQGIQPGSVDGILMDIGFCSTQVDDATRGFSFLCDGPLDMRMGAGTAF 342

Query: 143 ------SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
                 +A+ V+     ++LT IL + GE  +A  IA AIV+ R++ P Q+T  L+ + +
Sbjct: 343 ELAAIPTAATVLATLRCEELTHILRLYGELPKARAIADAIVRTRKTTPIQSTLQLADIAR 402

Query: 197 KTVY 200
           + V+
Sbjct: 403 RAVF 406



 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 65/156 (41%), Gaps = 46/156 (29%)

Query: 209 PATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFAS---- 264
           PA + FQALR+FVN+EI EL  GL  A   L+ GG L V++F   E   +++F  S    
Sbjct: 487 PARQVFQALRVFVNDEISELRAGLGQAIALLRPGGRLAVITFQGAETTALRRFLQSPTAI 546

Query: 265 -------------------RSGKVMAVRHM----------------IPSNAHPAVFQ--- 286
                              RS      RH+                + SN  P  F    
Sbjct: 547 LAADSVRSLDEDAPAASNARSADSSRPRHISLNDRFLAQKLQEFEQMQSNNDPTHFPTSR 606

Query: 287 ----SITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318
               ++  K + P++ ++  N R+RSAKL    R++
Sbjct: 607 ALPLTVLHKAIGPSEHEIHRNPRARSAKLHVFERSL 642


>gi|225166427|ref|ZP_03728086.1| S-adenosyl-methyltransferase MraW [Opitutaceae bacterium TAV2]
 gi|224799334|gb|EEG17902.1| S-adenosyl-methyltransferase MraW [Opitutaceae bacterium TAV2]
          Length = 192

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/186 (37%), Positives = 105/186 (56%), Gaps = 3/186 (1%)

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            P DMRM   +G+ AS  +  A    L R +   GEE+ A+R+  AI   R +     T 
Sbjct: 3   APADMRMDPRTGVPASLWLETATDDMLLRAIRDYGEERHATRVVRAIKDARGTGTLSRTA 62

Query: 190 DLSSLIQKTVYFSK--NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            L+ LI   +      + +IHPATR+FQ +RI +N+E+  L + L +A   L++GG+L  
Sbjct: 63  SLAELIANAIPARDRFSAKIHPATRAFQGIRIAINDELGALERALPAAFALLRSGGVLAA 122

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +SFHSLEDR VK+ F    G+  +     P++      + +T+K V P+ +++A N R+R
Sbjct: 123 ISFHSLEDRPVKQAFRRFCGQPESHDDHRPADLREKFAEPLTRKPVTPSDDELAANPRAR 182

Query: 308 SAKLRA 313
           SAKLRA
Sbjct: 183 SAKLRA 188


>gi|323445745|gb|EGB02206.1| hypothetical protein AURANDRAFT_69098 [Aureococcus anophagefferens]
          Length = 335

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 85/244 (34%), Positives = 126/244 (51%), Gaps = 19/244 (7%)

Query: 3   SKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPA--PGKVILDATFGAGGYSRSFC-KMG- 58
           + +C TM ++     G H P + E+ +  L     P  V +D TFG GG++R    K+G 
Sbjct: 98  ATTCGTMQAS-----GTHTPAMFEECVEALGVEWNPDGVYVDGTFGRGGHTRKILEKLGP 152

Query: 59  -SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQ 117
              +   D DP AV+ G E +R    +F +  A FS +   +    VDGV+ D+G+SS Q
Sbjct: 153 KGTLHGFDMDPEAVAVG-EQLRGEDPRFVIHHAPFSSMAAVLAGVAVDGVLLDIGISSPQ 211

Query: 118 IDCGDRGFSFQKSGPLDMRMSC-SGIS-ASDVVNQANVKDLTRILGILGEEKQAS--RIA 173
           +D G RGF  +  GPLDMR     G+  A   + +A+  +L   L   G E+ A+  RIA
Sbjct: 212 LD-GGRGFKPEVDGPLDMRFDVREGVEDAMGYLRRASRVELAAALEAYGGERPAAARRIA 270

Query: 174 HAI--VKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQG 231
            A+   K+  S    TT+  + L+++     +   +HPA  +FQALRI VN E  EL +G
Sbjct: 271 DAVALAKKDGSLARMTTRPFADLVERA-KGKEYQAMHPAKMTFQALRIVVNREYLELERG 329

Query: 232 LRSA 235
           L  A
Sbjct: 330 LAGA 333


>gi|118354992|ref|XP_001010757.1| MraW methylase family protein [Tetrahymena thermophila]
 gi|89292524|gb|EAR90512.1| MraW methylase family protein [Tetrahymena thermophila SB210]
          Length = 422

 Score =  112 bits (281), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 75/270 (27%), Positives = 137/270 (50%), Gaps = 29/270 (10%)

Query: 20  HVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPF 69
           H PVL++K+  +L             K ++D T G+ G+++ F +      ++ LD DP 
Sbjct: 100 HYPVLIDKITQVLQEEFYPHSSSHSEKCLVDCTLGSAGHAKHFLQKFPYLYILGLDLDPR 159

Query: 70  AVSCGQETMRDY-----KEQFSLFQATFSQL----------QDYVPDKGVDGVVFDLGVS 114
            +    + ++       + +F      F+ +          +++   K    +  DLG +
Sbjct: 160 MLQYINDNVKSQLSHSDQNRFKTRNENFTNIDKINLYKIFEEEFPSYKNFHAIFADLGYN 219

Query: 115 SMQIDCGDRGFSFQKSGPLDMRMSCSGI--SASDVVNQANVKDLTRILGILGEEKQASRI 172
           ++ ++  + GFS+ ++G LDMR + S    SA+D++N+A+  +L  I+   GE+  A  I
Sbjct: 220 TLHLENSEWGFSYLRNGKLDMRYNQSSQTNSAADILNKASYLELFEIIRQYGEDPNADVI 279

Query: 173 AHAIVKRRQSAPFQTTQDLSSLI--QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQ 230
           +  I+K+RQ  PF+TT+D+  LI   ++ Y  K  +    T+ FQALRI  N E+  L  
Sbjct: 280 SQMIIKQRQIKPFETTKDVVDLILEDQSGYSFKGGQYKAITKLFQALRIATNQELTNLQV 339

Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKK 260
            +      L   GL I+++FHSLE+ +V++
Sbjct: 340 FMDKIYDKLLKDGLGIIITFHSLEENIVEQ 369


>gi|46203082|ref|ZP_00052107.2| COG0275: Predicted S-adenosylmethionine-dependent methyltransferase
           involved in cell envelope biogenesis [Magnetospirillum
           magnetotacticum MS-1]
          Length = 141

 Score =  112 bits (280), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 60/141 (42%), Positives = 84/141 (59%), Gaps = 5/141 (3%)

Query: 41  LDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDY 98
           +D TFGAGGY+R+       + VIA+DRDP A+  G + +     +  L Q  F  L   
Sbjct: 1   MDGTFGAGGYTRALLDAAPEAQVIAIDRDPTAIRAGADLVAAANGRLRLIQGRFGDLDTL 60

Query: 99  VPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKD 155
           + ++G    D VV D+GVSSMQ+D   RGFSF++ GPLDMRM   G +A+D+VN+     
Sbjct: 61  LAEQGEAQADWVVLDIGVSSMQLDEAHRGFSFRQDGPLDMRMGGEGPTAADLVNETEEGM 120

Query: 156 LTRILGILGEEKQASRIAHAI 176
           L  IL   GEE+++  +A AI
Sbjct: 121 LADILYHFGEERRSRAVARAI 141


>gi|56808163|ref|ZP_00365945.1| COG0275: Predicted S-adenosylmethionine-dependent methyltransferase
           involved in cell envelope biogenesis [Streptococcus
           pyogenes M49 591]
          Length = 215

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/206 (34%), Positives = 113/206 (54%), Gaps = 10/206 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGS--NVIALDRDPFAVSCGQE 76
           HV VLL + + +L+  P  + +DAT G  G+S     K+G   ++   D+D  A+   Q 
Sbjct: 7   HVTVLLHETVDMLDIKPDGIYVDATLGGSGHSAYLLSKLGEEGHLYCFDQDQKAIDNAQV 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSG 131
           T++ Y  K Q +  +  F  L+  +   GVD   G+++DLGVSS Q+D  +RGFS+++  
Sbjct: 67  TLKSYIDKGQVTFIKDNFRHLKARLTALGVDEIDGILYDLGVSSPQLDERERGFSYKQDA 126

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM   S ++A +VVN     DL +I    GE+K + +IA  I + R   P + T +
Sbjct: 127 PLDMRMDRQSLLTAYEVVNTYPFNDLVKIFFKYGEDKFSKQIARKIEQARAIKPIEATTE 186

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQ 215
           L+ LI+      +   + HPA + FQ
Sbjct: 187 LAELIKAAKPAKELKKKGHPAKQIFQ 212


>gi|210610079|ref|ZP_03288258.1| hypothetical protein CLONEX_00444 [Clostridium nexile DSM 1787]
 gi|210152690|gb|EEA83696.1| hypothetical protein CLONEX_00444 [Clostridium nexile DSM 1787]
          Length = 211

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 113/219 (51%), Gaps = 21/219 (9%)

Query: 105 DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGIL 163
           D ++ DLGVSSMQID  DRGF+++  G LD+R++   G SA++ +      +L  +L   
Sbjct: 6   DFILADLGVSSMQIDNPDRGFTYKSEGSLDLRLNPEKGESAAERLKNVTEDELEGMLVEN 65

Query: 164 GEEKQASRIAHAIVKR-RQSAPFQTTQDLSSLIQKTVYFSKNNRIHPAT-----RSFQAL 217
            +E  A+ IA  ++K+ RQ     TT  L   I++ + F        A      R+FQAL
Sbjct: 66  SDEPYAAEIAQQVMKKLRQGEMIDTTTKLYETIEEALSFIPEKERKEAVKKSCQRTFQAL 125

Query: 218 RIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP 277
           RI VN+E E L   +     ALK+GG + +++FHS EDR+VKK F               
Sbjct: 126 RIDVNSEFEVLYALMEKLPSALKSGGKVAILTFHSGEDRIVKKAFKEWK----------- 174

Query: 278 SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
                 V+  I   V+ P+ ++   N R++S K+R  ++
Sbjct: 175 ---KAGVYSEIANDVIRPSAKECVRNSRAKSTKMRWAIK 210


>gi|148228894|ref|NP_001085383.1| methyltransferase like 15 [Xenopus laevis]
 gi|49258062|gb|AAH71163.1| MGC84490 protein [Xenopus laevis]
          Length = 191

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 58/125 (46%), Positives = 73/125 (58%), Gaps = 7/125 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           HVPV++ +VI  L P  G+ ILD TFGAGG++ S  +  SN+  +ALDRDP A +  Q+ 
Sbjct: 45  HVPVMVNEVIECLAPQEGQTILDLTFGAGGHTTSILRQASNIKILALDRDPAAFAIAQQL 104

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              Y          FS+ +D +   GV     DGV+ D G SSMQ D  DRGFS  K GP
Sbjct: 105 AHGYGPNIQPLLGRFSEAEDLLKSAGVEPGSIDGVLLDAGCSSMQFDTPDRGFSLSKDGP 164

Query: 133 LDMRM 137
           LDMRM
Sbjct: 165 LDMRM 169


>gi|314923253|gb|EFS87084.1| MraW methylase family protein [Propionibacterium acnes HL001PA1]
 gi|314967020|gb|EFT11119.1| MraW methylase family protein [Propionibacterium acnes HL082PA2]
 gi|314980976|gb|EFT25070.1| MraW methylase family protein [Propionibacterium acnes HL110PA3]
 gi|315091635|gb|EFT63611.1| MraW methylase family protein [Propionibacterium acnes HL110PA4]
 gi|315093059|gb|EFT65035.1| MraW methylase family protein [Propionibacterium acnes HL060PA1]
 gi|315103167|gb|EFT75143.1| MraW methylase family protein [Propionibacterium acnes HL050PA2]
 gi|327327840|gb|EGE69616.1| MraW methylase family protein [Propionibacterium acnes HL103PA1]
          Length = 201

 Score =  109 bits (272), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 72/182 (39%), Positives = 100/182 (54%), Gaps = 5/182 (2%)

Query: 135 MRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM   SG +A+ ++N+++  DL R+L   GEEK A RI  AIV  R   P +T+  L  
Sbjct: 1   MRMDQSSGRTAAQILNESDPGDLVRMLREYGEEKFADRIVRAIVTERDRQPIETSGRLVE 60

Query: 194 LIQKTVYFS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           +I + +  +  +    HPA R+FQALRI VN E+E L   L  A   L  GG + V+S+H
Sbjct: 61  IITEAIPATVRRKRHSHPAKRTFQALRIAVNREMETLPAVLPRALNRLDVGGRIAVLSYH 120

Query: 252 SLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR VK+ F             M+P +   A F  +T+    P  ++VA N RS SA+
Sbjct: 121 SLEDRPVKEAFRDACADTAPTGLPMVPESMA-AKFNPVTRGAERPDADEVATNPRSASAR 179

Query: 311 LR 312
           LR
Sbjct: 180 LR 181


>gi|332836125|ref|XP_508346.3| PREDICTED: methyltransferase like 15 isoform 2 [Pan troglodytes]
          Length = 279

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 55/142 (38%), Positives = 85/142 (59%), Gaps = 8/142 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCGQET 77
           H+PV++++V+  L+P  G++ LD TFG+GG++++  +  S+++  ALDRDP A +  +  
Sbjct: 72  HIPVMVDEVVHCLSPQKGQIFLDMTFGSGGHTKAILQKESDIVLYALDRDPTAYALAEHL 131

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              Y +Q       FSQ +  +   GV     DGV+ DLG SSMQ+D  +RGFS +K GP
Sbjct: 132 SELYPKQIRAMLGQFSQAEALLMKAGVQPGTFDGVLMDLGCSSMQLDTPERGFSLRKDGP 191

Query: 133 LDMRMSCSGISASDVVNQANVK 154
           LDMRM   G S    +   N++
Sbjct: 192 LDMRMD-GGRSTGTCIYPKNIR 212


>gi|119588673|gb|EAW68267.1| methyltransferase 5 domain containing 1, isoform CRA_b [Homo
           sapiens]
          Length = 279

 Score =  106 bits (265), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 55/142 (38%), Positives = 85/142 (59%), Gaps = 8/142 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCGQET 77
           H+PV++++V+  L+P  G++ LD TFG+GG++++  +  S+++  ALDRDP A +  +  
Sbjct: 72  HIPVMVDEVVHCLSPQKGQIFLDMTFGSGGHTKAILQKESDIVLYALDRDPTAYALAEHL 131

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              Y +Q       FSQ +  +   GV     DGV+ DLG SSMQ+D  +RGFS +K GP
Sbjct: 132 SELYPKQIRAMLGQFSQAEALLMKAGVQPGTFDGVLMDLGCSSMQLDTPERGFSLRKDGP 191

Query: 133 LDMRMSCSGISASDVVNQANVK 154
           LDMRM   G S    +   N++
Sbjct: 192 LDMRMD-GGRSTGTCIYPKNIR 212


>gi|115727005|ref|XP_001191227.1| PREDICTED: similar to methyltransferase 5 domain containing 1,
           partial [Strongylocentrotus purpuratus]
 gi|115891754|ref|XP_001186015.1| PREDICTED: similar to methyltransferase 5 domain containing 1,
           partial [Strongylocentrotus purpuratus]
          Length = 194

 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/188 (36%), Positives = 106/188 (56%), Gaps = 14/188 (7%)

Query: 143 SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQTTQDLSSLIQ--KTV 199
           +A+DVVN  +   LT+IL   GEE  A +IA AI+  R +   F +T +L+++I    T 
Sbjct: 6   TAADVVNSLDHVTLTQILRTYGEESNAKKIAQAIIDYRTNFNTFSSTSELATVIACCHTH 65

Query: 200 YFSKNNR------IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
             +K+NR       H AT++FQALRIFVNNE+ ELA  + +A   ++ GG L V++FHSL
Sbjct: 66  RDAKSNRDKLGRHAHTATKTFQALRIFVNNELNELAVAVEAAWDLMRPGGKLAVLTFHSL 125

Query: 254 EDRLVK-----KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           EDR+VK     +  A R   +   R     +     ++ + +  +    E++  N R+RS
Sbjct: 126 EDRVVKRSLQGRHVAERGTSLRQKRVESHKDNGAQKWEVVKRNELCADDEEINMNPRARS 185

Query: 309 AKLRAGMR 316
           AKLR  ++
Sbjct: 186 AKLRTAIK 193


>gi|225708994|gb|ACO10343.1| S-adenosyl-L-methionine-dependent methyltransferase METT5D1
           [Caligus rogercresseyi]
          Length = 366

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 85/260 (32%), Positives = 128/260 (49%), Gaps = 34/260 (13%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVSCGQET 77
           H PV  ++V+ +L P   ++ LD T+G GG++      +  + VIA DRD  ++      
Sbjct: 33  HTPVFFQEVLDILRPKKDQIFLDTTYGTGGHTNLILDHQPHARVIASDRDVSSIDLAMRM 92

Query: 78  MRDYKE-QFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            + Y     +   A FS+L  ++   G+     DGV+ D G+S +Q   G+RGFS +  G
Sbjct: 93  GQKYPSGSLNAIVARFSELPRHLIRLGLRENTCDGVIIDCGISDIQWG-GERGFSLK--G 149

Query: 132 PLDMRMSCSGI----SASDVVNQANVKDLTRILGILGEEK-QASRIAHAIVKRRQS-APF 185
           PLD+RM         +AS+V+       L R L   G+ K  A  +A+AIV+ R     F
Sbjct: 150 PLDLRMDPERYPETPTASEVLQSIRELPLLRPLKNYGKLKTNAKLVANAIVESRYMFNRF 209

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPAT-----------------RSFQALRIFVNNEIEEL 228
            T ++L  ++   V FS+  R    T                 R+  ALR+FVN+EI +L
Sbjct: 210 TTAEELYEVLLDAVKFSEVRRSLFLTTEEASSWEKAFTESLLHRTLTALRMFVNDEINQL 269

Query: 229 AQGLRSAEKALKAGGLLIVV 248
             G+R A   LK GGLL+VV
Sbjct: 270 EYGVRIASHYLKPGGLLLVV 289


>gi|124806575|ref|XP_001350761.1| s-adenosyl-methyltransferase, putative [Plasmodium falciparum 3D7]
 gi|23496889|gb|AAN36441.1| s-adenosyl-methyltransferase, putative [Plasmodium falciparum 3D7]
          Length = 508

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 87/314 (27%), Positives = 148/314 (47%), Gaps = 62/314 (19%)

Query: 41  LDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQ 96
           +DAT G GG++        N  +I +D+D  A+   +  ++ +    +  L    +  + 
Sbjct: 208 IDATLGGGGHTLEILNKIPNCRIIGIDKDIEALYYNKIKLKRFINNNKLKLIHGDYGNIL 267

Query: 97  DYVPD------KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS-------CSGIS 143
             +            G++ DLGVSS Q+ C DRGFS++ +G LDM M+        S + 
Sbjct: 268 HLLHLHSLPIFNYYSGILIDLGVSSHQLKCCDRGFSYKYNGILDMNMNKYTESQYLSKLF 327

Query: 144 ASD-----------------------VVNQANVKDLTRILGILGEEKQASRIAHAIVK-R 179
            +D                       ++N  ++K L  I+   GEEK+A +IA  I++ R
Sbjct: 328 RNDNEHINDINDIKKNPKNSYNKLHNILNTYSLKKLKFIIDTYGEEKKALKIAKKIIQWR 387

Query: 180 RQSAPFQTTQDLSSLIQKTV--YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
           +++    TT  L ++I  T    +  NN++   +R FQA RI++N E++ L Q L S+ K
Sbjct: 388 KENGMILTTFQLKNIILSTCKQNYKSNNKV--LSRVFQAFRIYINQELKTLKQLLISSHK 445

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297
            LK G  LIV+++HSLE + V+ F      K   +                  + V+P+ 
Sbjct: 446 LLKTGKKLIVITYHSLEKKCVELFIEKNKQKWTKLH-----------------QNVMPSD 488

Query: 298 EDVAFNRRSRSAKL 311
           E++  N+ +RSAK+
Sbjct: 489 EEIKLNKSARSAKM 502


>gi|70953007|ref|XP_745633.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56526017|emb|CAH81938.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
          Length = 318

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 98/340 (28%), Positives = 160/340 (47%), Gaps = 74/340 (21%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCG 74
           DH P+LL            + ++DAT G GG++    + F K+   VI++D+D  A+   
Sbjct: 4   DH-PILLH--------NQNEYMIDATLGGGGHTLEILKKFTKLK--VISIDKDIEAIYYN 52

Query: 75  QETMRDY--KEQFSLFQATFSQ---LQDY--VPD-KGVDGVVFDLGVSSMQIDCGDRGFS 126
           +  ++ Y    +  L    +     L +Y  +P       ++ DLGVS+ Q+    RGFS
Sbjct: 53  KYKLKSYIDTNRLKLIHGNYKDILFLLNYHSLPLFNSYSAILVDLGVSTHQLKSSKRGFS 112

Query: 127 FQKSGPLDMRMSC-------------------------------SGISASDVVNQANVKD 155
           ++ +  LDM M+                                 G    +++N  N+K 
Sbjct: 113 YKYNNILDMNMNKYTEKEYVENYINKELKQDNEIKELYMTSEIEDGKKIHNILNTYNLKK 172

Query: 156 LTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV--YFSKNNRIHPATRS 213
           L  I+   GEEK+A +IA  I++ R+      T  L ++I  T    +  NN++   +R 
Sbjct: 173 LKYIIQKFGEEKKAFKIAKKIIEWRKQNKEIVTTLLKNIILSTCKNNYKSNNKV--LSRV 230

Query: 214 FQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVR 273
           FQA RI+VNNE+  L   L S+ K LK GG+LIV+S+HSLE++ +  F  +++     + 
Sbjct: 231 FQAFRIYVNNELLSLKNLLLSSHKILKQGGVLIVISYHSLENKYIDLFVKNKTQLWKQI- 289

Query: 274 HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
                N HP          +VPT +++  N+ SRSAK+ A
Sbjct: 290 -----NTHP----------IVPTDQEIKLNKSSRSAKMFA 314


>gi|198413504|ref|XP_002123312.1| PREDICTED: similar to methyltransferase 5 domain containing 1,
           partial [Ciona intestinalis]
          Length = 190

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/187 (34%), Positives = 110/187 (58%), Gaps = 17/187 (9%)

Query: 142 ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYF 201
           I+A+DVVN  + ++LT I+   G+E+ A  I+ +I++ R   P  TT +L+ ++  ++ F
Sbjct: 5   ITAADVVNNLDEEELTEIIYKYGDERNARNISSSIIENR---PISTTLELARVV--SMAF 59

Query: 202 SKNN----------RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           S+ +          R H AT++F A+RIFVN+E+ E+  G++++EK L  GG + V++FH
Sbjct: 60  SQTSDVFRVDSLGRRCHIATKTFMAIRIFVNDELNEICHGIKTSEKYLMNGGKMGVITFH 119

Query: 252 SLEDRLVKKFFAS-RSGKVMAVRHMIPSNAHPA-VFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK+        K   V+  +   +     +    + +++P+ E++  N RSRSA
Sbjct: 120 SLEDRVVKRMLKQIEISKPFNVKMGVGKRSKTERRYWKREQSLLLPSGEEIEQNPRSRSA 179

Query: 310 KLRAGMR 316
           KLR   R
Sbjct: 180 KLRIATR 186


>gi|205373087|ref|ZP_03225892.1| S-adenosyl-methyltransferase MraW [Bacillus coahuilensis m4-4]
          Length = 184

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 89/162 (54%), Gaps = 7/162 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
           +H  VLL + +  L   P  + +D T G  G+S         G ++ A D+D  A+    
Sbjct: 15  NHTTVLLRETVDELKIKPNGIYVDCTLGGAGHSEYLLSQLGEGGHLFAFDQDETALRHAA 74

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E +  Y ++ +  ++ F  L+  + +    GVDG+++DLGVSS Q+D  +RGFS+    P
Sbjct: 75  EKLNAYSDKVTYVKSNFRYLKSELTNLGVMGVDGILYDLGVSSPQLDTPERGFSYHHDAP 134

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIA 173
           LDMRM   G +SA +VVN+ + + L RI    GEEK + +IA
Sbjct: 135 LDMRMDLQGAVSAYEVVNEWSYEKLVRIFFQYGEEKFSKQIA 176


>gi|323222501|gb|EGA06871.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
          Length = 149

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 60/145 (41%), Positives = 89/145 (61%), Gaps = 11/145 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMGSN--VIALDRDPFAVSCGQE 76
           H  VLL++ +  LN  P  + +D TFG GG+SR    ++G    ++A+DRDP A++  Q 
Sbjct: 7   HTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAQ- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           T+ D +  FS+    FS L DYV ++     +DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 66  TINDPR--FSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFMRDGP 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDL 156
           LDMRM  + G SA++ +  A   D+
Sbjct: 124 LDMRMDPTRGQSAAEWLQTAEEADI 148


>gi|156095737|ref|XP_001613903.1| S-adenosyl-methyltransferase mraW [Plasmodium vivax SaI-1]
 gi|148802777|gb|EDL44176.1| S-adenosyl-methyltransferase mraW, putative [Plasmodium vivax]
          Length = 471

 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 92/331 (27%), Positives = 156/331 (47%), Gaps = 71/331 (21%)

Query: 33  NPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDY--KEQFSL 87
           NP P +  +DAT G GG++    K     S VIA+D+D  ++   Q+ ++ Y    + ++
Sbjct: 154 NP-PVEYFIDATLGGGGHTLEMLKKLAPTSKVIAIDKDIESIYYNQQKLQRYVDANKLTM 212

Query: 88  FQATFSQLQDYVPDKGV------DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS--- 138
               +  +   +   G+       G++ DLG S+ Q+ CG RGFS++ +G LDM M    
Sbjct: 213 IHGDYRYIIHLLHRYGLPLFGSYSGILLDLGASTHQLRCGRRGFSYKHNGLLDMSMDRYT 272

Query: 139 -------C--------SGISASDVVNQAN--------------------VKDLTRILGIL 163
                  C        SG +    V QAN                     + L  I+   
Sbjct: 273 DEEYARMCREGAERGGSGSNGGFQVKQANRANPQTEPPKRIGEILNTYSPQQLRHIMHTY 332

Query: 164 GEEKQASRIAHAIVKRRQS-APFQTTQDLSSLIQKTVY--FSKNNRIHPATRSFQALRIF 220
           G+EK+AS+IA  I + R+S     TT  L  ++  T    +  N ++   +R FQ+ RI+
Sbjct: 333 GQEKKASKIAKKIAQWRKSRGTITTTHQLRDIVLSTCKQNYKANQKV--LSRVFQSFRIY 390

Query: 221 VNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA 280
           VN+E++ L + L S+ K L+A   L+V+S+HSLE + V++F  SR               
Sbjct: 391 VNDEMKALKEFLLSSYKLLRARKRLVVISYHSLEYQCVERFVHSRKN------------- 437

Query: 281 HPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
              +++ I    + P++ ++  N+ +RSAK+
Sbjct: 438 ---LWEKINDVDITPSEGELKANKSARSAKM 465


>gi|323219910|gb|EGA04388.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
          Length = 159

 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 64/160 (40%), Positives = 98/160 (61%), Gaps = 8/160 (5%)

Query: 163 LGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVN 222
            GEE+ A RIA AIV+R +  P   T++L+ ++       K+   HPATR+FQA+RI+VN
Sbjct: 1   FGEERFAKRIARAIVERNREQPMTRTKELAEVVAAATPV-KDKFKHPATRTFQAVRIWVN 59

Query: 223 NEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF--ASRSGKVMAVRHMIPSNA 280
           +E+EE+ Q L+S+   L  GG L ++SFHSLEDR+VK+F    SR  ++ A   M  +  
Sbjct: 60  SELEEIEQALKSSLSVLAPGGRLSIISFHSLEDRIVKRFMREQSRGPQIPAGLPMTEAQL 119

Query: 281 HP---AVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
                   +++ K  ++P +++VA N R+RS+ LR   RT
Sbjct: 120 KKLGGRELRALGK--LMPGEKEVAENPRARSSVLRIAERT 157


>gi|258539486|ref|YP_003173985.1| S-adenosyl-methyltransferase MraW [Lactobacillus rhamnosus Lc 705]
 gi|257151162|emb|CAR90134.1| S-adenosyl-methyltransferase MraW [Lactobacillus rhamnosus Lc 705]
          Length = 214

 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 72/203 (35%), Positives = 101/203 (49%), Gaps = 9/203 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H  VLL++  A L        +DAT G GG++R      +N  +IA D+D  A++  +  
Sbjct: 6   HETVLLKEATAALAVKSDGTYVDATLGRGGHTRQILNQLTNGRLIAFDQDEAAIAAVKRH 65

Query: 78  MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
                 Q +L    F  L   + D   + VDGV++DLGVSS Q D   RGFS++   PLD
Sbjct: 66  FGTLPPQLTLVHRNFRDLSAALADLDIRQVDGVLYDLGVSSPQFDDSKRGFSYRFDAPLD 125

Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM     + A  +VN+    +L RI    GEE  + +IA  I + R  AP  TT  L  
Sbjct: 126 MRMDQRQTLDAKTIVNEWPYAELVRIFSRYGEEHFSKQIARRIEQARAQAPITTTFQLVE 185

Query: 194 LIQKTVYFSKNNRI--HPATRSF 214
           LI+  +  +K  R   HPA +S 
Sbjct: 186 LIKAGIP-AKARRTGGHPAKKSL 207


>gi|221061767|ref|XP_002262453.1| SAM dependent methyltransferase [Plasmodium knowlesi strain H]
 gi|193811603|emb|CAQ42331.1| SAM dependent methyltransferase, putative [Plasmodium knowlesi
           strain H]
          Length = 507

 Score =  102 bits (254), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 87/342 (25%), Positives = 160/342 (46%), Gaps = 78/342 (22%)

Query: 29  IALLNPAPGKVILDATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQETMRDY--K 82
           ++L+     +  +DAT G GG++    +SF +  S V+A+D+D  ++   ++ ++ Y   
Sbjct: 179 VSLMQNTSPEYYIDATLGGGGHTLEILKSFPRT-SRVVAIDKDIESIYYSKQKLQCYVDT 237

Query: 83  EQFSLFQATFSQLQDYVPDKGV------DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM- 135
            + ++    +  +   +   G+       G++ DLGVS+ Q+ CG RGFS+Q +G LDM 
Sbjct: 238 NKLTMIHGDYRYIIHLLHRHGLPLFGRYSGILLDLGVSTHQLKCGRRGFSYQHNGLLDMS 297

Query: 136 ----------RMSCSGISASD---------------------------------VVNQAN 152
                     RM    I   +                                 ++N  +
Sbjct: 298 IDRYTDEEYDRMCRESIEREEGGSNEDYQYDQTNQIKRAKGESPQSEPKKGIGEILNTYS 357

Query: 153 VKDLTRILGILGEEKQASRIAHAIVK-RRQSAPFQTTQDLSSLIQKTV--YFSKNNRIHP 209
            + L  I+   G+EK+A +IA  IV+ R+ S   +TT  L  ++  T    +  N ++  
Sbjct: 358 AQQLRFIMHTYGQEKKAYKIAKKIVQWRKSSGTIRTTYQLRDIVLSTCKKNYKANQKV-- 415

Query: 210 ATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKV 269
            +R FQ+ RI++N+E++ L + L S+ K L+A   L+V+S+HSLE + V+ F  SR    
Sbjct: 416 LSRVFQSFRIYINDEMKALKEFLLSSYKLLRAKKRLVVISYHSLEYKCVEMFVHSRKN-- 473

Query: 270 MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
                         +++ I    + P +E++  N+ +RSAK+
Sbjct: 474 --------------LWKKINDVDITPNEEELKANKSARSAKM 501


>gi|21410962|gb|AAH30997.1| METT5D1 protein [Homo sapiens]
          Length = 212

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/163 (35%), Positives = 91/163 (55%), Gaps = 16/163 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCGQET 77
           H+PV++++V+  L+P  G++ LD TFG+GG++++  +  S+++  ALDRDP A +  +  
Sbjct: 5   HIPVMVDEVVHCLSPQKGQIFLDMTFGSGGHTKAILQKESDIVLYALDRDPTAYALAEHL 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              Y +Q       FSQ +  +   GV     DGV+ DLG SSMQ+D  +RGFS +K G 
Sbjct: 65  SELYPKQIRAMLGQFSQAEALLMKAGVQPGTFDGVLMDLGCSSMQLDTPERGFSLRKDGS 124

Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175
           LDMRM   G S    +   N++         GE  Q +R ++ 
Sbjct: 125 LDMRMD-GGRSTGTCIYPKNIRG--------GEACQENRFSNC 158


>gi|82595835|ref|XP_726012.1| s-adenosyl-methyltransferase Mraw [Plasmodium yoelii yoelii str.
           17XNL]
 gi|23481241|gb|EAA17577.1| s-adenosyl-methyltransferase mraw-related [Plasmodium yoelii
           yoelii]
          Length = 493

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 92/329 (27%), Positives = 156/329 (47%), Gaps = 73/329 (22%)

Query: 40  ILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQ- 94
           ++DAT G GG++    K   N  VI++D+D  A+   +  +R Y  K +  +    +   
Sbjct: 179 LIDATLGGGGHTLEMLKKFKNLKVISIDKDIEAIYYNKYKLRSYINKNRLKIIHGNYKDI 238

Query: 95  --LQDY--VPD-KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS----------- 138
             L +Y  +P       ++ DLGVS+ QI    RGFS++ +  LDM M+           
Sbjct: 239 LFLLNYYSLPIFNTYSAILVDLGVSTHQIKSSKRGFSYKYNDILDMNMNKYTEKEYIENH 298

Query: 139 -------------------------------CSGISASDVVNQANVKDLTRILGILGEEK 167
                                            G    +++N  N+K L  I+   GEEK
Sbjct: 299 INKELKQDTKIKELYMINESHDDDKNIYHKNYDGKKIHNILNTYNLKKLKYIIQKFGEEK 358

Query: 168 QASRIAHAIVK-RRQSAPFQTTQDLSSLIQKTV--YFSKNNRIHPATRSFQALRIFVNNE 224
           +A +IA  I++ R+++    TT DL ++I  T    +  NN++   +R FQ+ RI++NNE
Sbjct: 359 KAYKIAKKIIEWRKKNGEIITTFDLKNIILSTCKNNYKSNNKV--LSRVFQSFRIYINNE 416

Query: 225 IEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV 284
           +  L   L S+ K LK GG+LI++S+HSLE++ +  F  +++                 +
Sbjct: 417 LLSLKNLLLSSHKILKQGGVLILISYHSLENKYIDLFVKNKT----------------KL 460

Query: 285 FQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           +  I  + ++PT ++V  N+ SRSAK+ A
Sbjct: 461 WNQINIQPIIPTNQEVKLNKSSRSAKMFA 489


>gi|301102540|ref|XP_002900357.1| S-adenosyl-L-methionine-dependent methyltransferase mraW-like
           protein [Phytophthora infestans T30-4]
 gi|262102098|gb|EEY60150.1| S-adenosyl-L-methionine-dependent methyltransferase mraW-like
           protein [Phytophthora infestans T30-4]
          Length = 221

 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 65/195 (33%), Positives = 104/195 (53%), Gaps = 18/195 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKV-----ILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVS 72
           H+PVLL++ +  L+     V      +D T G GG+SR+  +  S+  ++ +D DP  +S
Sbjct: 19  HIPVLLQETVTALSRNVSDVSKPLYFVDGTAGFGGHSRAILQRFSDARLLCIDCDPEVLS 78

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYV-----PDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
             Q  + ++  + S    +++ L  ++     PD+ VDG++ DLG +S   D   RGFS 
Sbjct: 79  IAQANLSEFHGRVSFQNGSYADLAKHLEAARFPDE-VDGILVDLGANSFHFDAARRGFSV 137

Query: 128 QKSGPLDMR---MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
              GPLDMR   +  S  +A+D VN  +   LT+I    GEE+ A   A AIV+ R+   
Sbjct: 138 LNDGPLDMRFNQLDASLSTAADAVNSLSEVQLTKIFRDYGEERLAKEFAKAIVREREEKG 197

Query: 185 --FQTTQDLSSLIQK 197
             F+TT+DL   I++
Sbjct: 198 KVFETTKDLRECIER 212


>gi|205830884|sp|P0C7V9|ME15P_HUMAN RecName: Full=Putative methyltransferase-like protein 15P1;
           AltName: Full=Methyltransferase 5 domain-containing
           protein 2; AltName: Full=Methyltransferase-like protein
           15 pseudogene 1
 gi|119599129|gb|EAW78723.1| hCG2022166, isoform CRA_a [Homo sapiens]
          Length = 234

 Score = 99.4 bits (246), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 50/125 (40%), Positives = 78/125 (62%), Gaps = 7/125 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCGQET 77
           H+PV++++V+  L+P  G++ LD TFG+GG++++  +  S+++  ALDRDP A +  +  
Sbjct: 72  HIPVMVDEVVHCLSPQKGQIFLDMTFGSGGHTKAILQKESDIVLYALDRDPTAYALAEHL 131

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              Y +Q       FSQ +  +   GV     DGV+ DLG SSMQ+D  +RG S +K GP
Sbjct: 132 SELYPKQIRAMLGQFSQAEALLMKAGVQPGTFDGVLMDLGCSSMQLDTPERGSSLRKDGP 191

Query: 133 LDMRM 137
           LD+RM
Sbjct: 192 LDIRM 196


>gi|72384693|gb|AAZ67638.1| S-adenosyl-methyltransferase putative [Haemophilus parasuis 29755]
          Length = 187

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/173 (36%), Positives = 97/173 (56%), Gaps = 6/173 (3%)

Query: 146 DVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNN 205
           +VVNQ + + L RI    GEEK + +IA  I   R+  P +TT +L  +I++ +  +K  
Sbjct: 10  EVVNQWSYEALVRIFFRYGEEKFSKQIARRIEAHREQQPIETTLELVDVIKEGIP-AKAR 68

Query: 206 RI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFA 263
           R   HPA R FQA+RI VN+E+      +  A + +K GG + V++FHSLEDRL K+ F 
Sbjct: 69  RKGGHPAKRVFQAIRIAVNDELSAFEDSVEQAIECVKVGGRISVITFHSLEDRLCKQIFQ 128

Query: 264 --SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
              +   V     +IP    P + + + +K +  T +D+  N R+RSAKLR  
Sbjct: 129 EFEKGPDVPRGLPVIPEAYTPKL-KRVNRKPITATDDDLNENNRARSAKLRVA 180


>gi|167947445|ref|ZP_02534519.1| S-adenosylmethyl transferase MraW [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 172

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/160 (38%), Positives = 90/160 (56%), Gaps = 5/160 (3%)

Query: 159 ILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALR 218
           +L   G+E+ A RIA AIV  RQ  P  TT  L+ ++       +  + HPATRSFQA+R
Sbjct: 14  VLKRYGDERHARRIARAIVAARQVEPILTTGRLAEIVSAANPAWEKGK-HPATRSFQAIR 72

Query: 219 IFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF--ASRSGKVMAVRHMI 276
           IF+N E+++L Q L    + L+ GG L V+SFHSLEDR+VK+F    ++  +  A   + 
Sbjct: 73  IFINRELDDLQQFLGQVLEVLRPGGRLAVISFHSLEDRIVKRFMRDQAKGDRFPAGVPVT 132

Query: 277 PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
            +   P +   +  K + P  ++   N R+RSA LR   R
Sbjct: 133 QAQLQPRL--KLLGKAIRPGADETESNPRARSAVLRVAER 170


>gi|72025930|ref|XP_795360.1| PREDICTED: similar to methyltransferase 5 domain containing 1
           [Strongylocentrotus purpuratus]
 gi|115727007|ref|XP_001191279.1| PREDICTED: similar to methyltransferase 5 domain containing 1
           [Strongylocentrotus purpuratus]
          Length = 187

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 48/126 (38%), Positives = 72/126 (57%), Gaps = 5/126 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF--CKMGSNVIALDRDPFAVSCGQET 77
           H PV++E+V++   P   +V +D TFG GG++++   C  G  V  LDRDPFA    Q+ 
Sbjct: 61  HKPVMVEEVLSFFAPQANQVYIDMTFGGGGHTQALMKCAPGITVYGLDRDPFAHQIAQKL 120

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
              +K Q       FS+++D +  + V   DG++ D G SS Q D  +RGF+  + GPLD
Sbjct: 121 SLHHKGQLCPLLGKFSEVKDLLSQREVSMVDGILIDAGCSSFQFDSPERGFALSQDGPLD 180

Query: 135 MRMSCS 140
           MRM  +
Sbjct: 181 MRMDAN 186


>gi|266624100|ref|ZP_06117035.1| S-adenosyl-methyltransferase MraW [Clostridium hathewayi DSM 13479]
 gi|288864078|gb|EFC96376.1| S-adenosyl-methyltransferase MraW [Clostridium hathewayi DSM 13479]
          Length = 167

 Score = 95.9 bits (237), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 98/163 (60%), Gaps = 8/163 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGS--NVIALDRDPFAVSCGQ 75
           +H  VLL + I  LN  P  + +D T G GG++   C+ +G    +I +D+D  A++   
Sbjct: 4   EHKSVLLYEAIDSLNVKPDGIYVDGTLGGGGHALEVCRRLGEYGRLIGIDQDADAIAAAS 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSF-QKSG 131
           E +RDY+++ ++ ++ + ++Q  + D G+   DG+  DLGVSS Q+D  +RGF++ ++  
Sbjct: 64  ERLRDYEDRVTIVRSNYEEIQSVLKDLGIEKADGIYLDLGVSSYQLDTPERGFTYREEDA 123

Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIA 173
           PLDMRM      +A+D+VN  +  DL RI+   GE+K A  IA
Sbjct: 124 PLDMRMDQRNTRTAADIVNTYSEFDLYRIIRDYGEDKFAKNIA 166


>gi|294670599|ref|ZP_06735478.1| hypothetical protein NEIELOOT_02324 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307724|gb|EFE48967.1| hypothetical protein NEIELOOT_02324 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 180

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/172 (38%), Positives = 98/172 (56%), Gaps = 10/172 (5%)

Query: 151 ANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPA 210
           A+  ++  ++   GEE+ + +IA AIV +R      TT  L+ +  + V   +  +  PA
Sbjct: 3   ADEDEIHEVIKNYGEERFSRQIARAIVAQRAVGSIDTTGKLAQIAAQNVRTRERGQ-DPA 61

Query: 211 TRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSG--- 267
           TR+FQA+RIF+N E+EE+A  L  A   LK+GG L V++FHSLEDR+VK+F    S    
Sbjct: 62  TRTFQAIRIFINRELEEIAAVLPQAAGRLKSGGRLAVIAFHSLEDRIVKQFIKRYSTHAP 121

Query: 268 --KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
             K  AVR    ++      +SI K +   + ++VA N R+RSA LR   RT
Sbjct: 122 LPKWAAVRE---ADLPQPPLKSIGKAIKA-SADEVAANPRARSAVLRIAERT 169


>gi|210610097|ref|ZP_03288259.1| hypothetical protein CLONEX_00445 [Clostridium nexile DSM 1787]
 gi|210152609|gb|EEA83615.1| hypothetical protein CLONEX_00445 [Clostridium nexile DSM 1787]
          Length = 265

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/216 (31%), Positives = 111/216 (51%), Gaps = 14/216 (6%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF--CKMGS-NVIALDRDPFAVSCG 74
           G H+ + +++++      PG+  LDAT G GG++     C  G  ++ ALD DP      
Sbjct: 50  GMHISICVKEILDFFQIEPGQKGLDATLGYGGHTLEMLKCLKGEGHLYALDIDPIESVKT 109

Query: 75  QETMRDY---KEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           +E +++    +E  S+    F+ +   V + G  D ++ DLGVSSMQID  DRGF+++  
Sbjct: 110 KERLKNLGYGEEMLSIRHLNFADIDQVVEEAGPFDFILADLGVSSMQIDNPDRGFTYKSE 169

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTT 188
           G LD+R++   G SA++ +      +L  +L    +E  A+ IA  ++K+ RQ     TT
Sbjct: 170 GSLDLRLNPEKGESAAERLKNVTEDELEGMLVENSDEPYAAEIAQQVMKKLRQGEMIDTT 229

Query: 189 QDLSSLIQKTVYFSKNNRIHPAT-----RSFQALRI 219
             L   I++ + F        A      R+FQALRI
Sbjct: 230 TKLYETIEEALSFIPEKERKEAVKKSCQRTFQALRI 265


>gi|42559483|sp|Q8KTR3|RSMH_TREPR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|21702588|gb|AAM75985.1|AF481102_21 putative protein YabC [Candidatus Tremblaya princeps]
          Length = 295

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 91/312 (29%), Positives = 141/312 (45%), Gaps = 47/312 (15%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MG--SNVIALDRDPFAVSCGQ 75
           +H  V++++V+  L      + +DAT+G GG+S +    +G    VIALD       C Q
Sbjct: 5   EHRSVMIQEVVDNLLTNTSGLYIDATYGTGGHSTALLGCLGPQGKVIALD-------CDQ 57

Query: 76  ETMRDYKE--QFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
               D+    + +   A F +L  Y+      G DG+V DLG S+ Q+    RG S+   
Sbjct: 58  SIRFDHTSDPRAAAGHANFRELSGYLRCAEIYGADGIVADLGPSATQVHDAQRGLSYLHP 117

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDL---TRILGILGEEKQA-SRIAHAIVKRRQSAPF 185
           GP+DMR+  +  +  S  + +  +  L    R  G  G  K A SRI H + K R    +
Sbjct: 118 GPIDMRVDPTLRVPLSGRLMRTGLGTLHSSLRCHGFSGRTKAAASRILHIVRKAR----Y 173

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            TT D+++          N   H A  +F+ALR   N+E + L   +R A   LK GG L
Sbjct: 174 TTTLDVAT----AACGLHNQGKHMAADAFRALRSMANSEPQCLRSLVRHAPAVLKPGGRL 229

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           ++++F S  +R+V+      S  V+                    + V PTQ +V  N  
Sbjct: 230 LILTFDSFGERMVRASIEHASCLVL-------------------MRTVAPTQREVDTNPG 270

Query: 306 SRSAKLRAGMRT 317
           +RS+ L    RT
Sbjct: 271 ARSSLLHVLRRT 282


>gi|289426915|ref|ZP_06428641.1| MraW methylase family protein [Propionibacterium acnes J165]
 gi|289160004|gb|EFD08182.1| MraW methylase family protein [Propionibacterium acnes J165]
          Length = 178

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/158 (40%), Positives = 85/158 (53%), Gaps = 4/158 (2%)

Query: 158 RILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS--KNNRIHPATRSFQ 215
           R+L   GEEK A RI  AIV  R   P +T+  L  +I + +  +  +    HPA R+FQ
Sbjct: 2   RMLREYGEEKFADRIVRAIVTERDRQPIETSGRLVEIITEAIPATVRRKRHSHPAKRTFQ 61

Query: 216 ALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVM-AVRH 274
           ALRI VN E+E L   L  A   L  GG + V+S+HSLEDR VK+ F         A   
Sbjct: 62  ALRIAVNREMETLPAVLPRALDRLDVGGRIAVLSYHSLEDRPVKEAFRDACADTAPAGLP 121

Query: 275 MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           M+P +   A F  +T+    P  ++VA N RS SA+LR
Sbjct: 122 MVPESMA-AKFNPVTRGAERPDADEVATNPRSASARLR 158


>gi|312867867|ref|ZP_07728072.1| S-adenosyl-methyltransferase MraW [Streptococcus parasanguinis
           F0405]
 gi|311096622|gb|EFQ54861.1| S-adenosyl-methyltransferase MraW [Streptococcus parasanguinis
           F0405]
          Length = 186

 Score = 93.2 bits (230), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 87/161 (54%), Gaps = 14/161 (8%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALD 65
           MS   HH     V VLL + I +L+  P  + +DAT G  G+S           ++ A D
Sbjct: 1   MSKEFHH-----VTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLTKLNESGHLYAFD 55

Query: 66  RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120
           +D  A+   +  +  + E+   +  +  F  L++ + D GV   DG+ +DLGVSS Q+D 
Sbjct: 56  QDQHAIENAKIRLAPFIEKGMVTFIKDNFRHLKERLNDLGVTEIDGICYDLGVSSPQLDE 115

Query: 121 GDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRIL 160
            +RGFS++K  PLDMRM+  + ++A +VVN  +  DL RI 
Sbjct: 116 RERGFSYKKDAPLDMRMNQEASLTAYEVVNSYDYHDLVRIF 156


>gi|325914208|ref|ZP_08176560.1| putative S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325539592|gb|EGD11236.1| putative S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 146

 Score = 92.4 bits (228), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 50/121 (41%), Positives = 71/121 (58%), Gaps = 4/121 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HVPVL  +V+  L    G   LD TFG GG++R   +    G  ++ +D+DP A++  ++
Sbjct: 18  HVPVLYTQVLDGLQVTEGGAYLDGTFGRGGHARGVLQHLGPGGRLLVMDKDPEAIAVAEQ 77

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
           T      + S+ + +F+ L   V    VDG++ DLGVSS Q+D   RGFSF K GPLDMR
Sbjct: 78  TFGG-DARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLDVAGRGFSFGKDGPLDMR 136

Query: 137 M 137
           M
Sbjct: 137 M 137


>gi|198431217|ref|XP_002121381.1| PREDICTED: similar to MGC84490 protein [Ciona intestinalis]
          Length = 226

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/129 (40%), Positives = 73/129 (56%), Gaps = 15/129 (11%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR------SFCKMGSNVIALDRDPFAVSC 73
           H+PV+ E++++ LN   G VI+D TFGAGG+++        CK    VIALDRD  A   
Sbjct: 36  HIPVMAEELVSGLNIKRGDVIIDMTFGAGGHTKFIMENYKHCK----VIALDRDEKAFEI 91

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQ 128
            Q+  + +K +       FS+L   + D G+     + V+ D G SSMQ D  +RGFS  
Sbjct: 92  AQDLSKKFKGRIIPLLGKFSELDKLLSDHGIVENSLNAVLLDAGCSSMQFDQPERGFSLV 151

Query: 129 KSGPLDMRM 137
           + GPLDMRM
Sbjct: 152 RDGPLDMRM 160


>gi|2738256|gb|AAB94406.1| putative ipaD homolog [Rickettsia typhi str. Wilmington]
          Length = 124

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/126 (40%), Positives = 77/126 (61%), Gaps = 5/126 (3%)

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISAS 145
           S F  +F +L+     +  DG+V DLGVSSMQ+D   RGFSF   GPLDMRMS  G SA 
Sbjct: 4   SNFADSFGKLKQ----QKFDGIVMDLGVSSMQLDIAGRGFSFLYDGPLDMRMSAQGFSAE 59

Query: 146 DVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNN 205
           + VN A+ ++++ ++   G E  + RIA  I+K R+ A   +T+ L+ +++ ++ F K  
Sbjct: 60  EFVNTADEQEISDVIYKYGNESLSRRIAKNIIKYRKIARIDSTRKLAEIVRYSIGFRK-G 118

Query: 206 RIHPAT 211
           +I  AT
Sbjct: 119 KIAFAT 124


>gi|291546845|emb|CBL19953.1| Predicted S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [Ruminococcus sp. SR1/5]
          Length = 282

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/196 (32%), Positives = 105/196 (53%), Gaps = 15/196 (7%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF--CKMG-SNVIALDRDPFAVSCG 74
           G H+ ++++++I  L   PG+V  DAT G GG++++   C  G  ++ A D DP   +  
Sbjct: 66  GMHISIMVKEIIDFLEIRPGQVGFDATLGYGGHTKAMLECLRGQGHMYATDVDPEESA-- 123

Query: 75  QETMRDYKEQ------FSLFQATFSQLQDYVPD-KGVDGVVFDLGVSSMQIDCGDRGFSF 127
            +T +   EQ       ++    F  + +   +  G D ++ DLGVSSMQID   RGFSF
Sbjct: 124 -KTRKRLAEQGFGEDILTIKLQNFCTIDEIAEEVGGFDFILADLGVSSMQIDNPKRGFSF 182

Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPF 185
           +  GPLD+R++  +GISA+  ++  + ++L  +L    +E     IA AI    R+    
Sbjct: 183 KVDGPLDLRLNQETGISAAQRLDTISREELAGMLDENSDEPYCEEIAKAITDEIRRGNHI 242

Query: 186 QTTQDLSSLIQKTVYF 201
            TT  L  +I+KT+ F
Sbjct: 243 DTTTKLREVIEKTLSF 258


>gi|156329544|ref|XP_001619047.1| hypothetical protein NEMVEDRAFT_v1g152542 [Nematostella vectensis]
 gi|156201404|gb|EDO26947.1| predicted protein [Nematostella vectensis]
          Length = 150

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/151 (39%), Positives = 80/151 (52%), Gaps = 25/151 (16%)

Query: 40  ILDATFGAGGYSRSF-----CKMGSNVIALDRDPFAVSCGQ--ETMRDYKEQFSLFQATF 92
            +DATFGAGG++ +      CK    V A+DRDP AV   Q   T  +YK Q    Q  F
Sbjct: 1   FVDATFGAGGHTCAILNSAKCK----VFAVDRDPVAVEIAQVLSTRPEYKGQLIPLQGKF 56

Query: 93  SQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-------- 139
           S L + + + G+     DG++ D+G SSMQ D   RGFS  K GPLDMRM          
Sbjct: 57  SDLFELLSNNGIKKESLDGMLLDIGPSSMQFDDPLRGFSLSKDGPLDMRMDSENDTKSSR 116

Query: 140 -SGISASDVVNQANVKDLTRILGILGEEKQA 169
            S  +A+DVVN  + ++L  +L   G E+ A
Sbjct: 117 NSSFTAADVVNSISERELISVLRHYGGERDA 147


>gi|153844085|ref|ZP_01993621.1| MraW methylase family [Vibrio parahaemolyticus AQ3810]
 gi|149745262|gb|EDM56513.1| MraW methylase family [Vibrio parahaemolyticus AQ3810]
          Length = 148

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/137 (40%), Positives = 78/137 (56%), Gaps = 6/137 (4%)

Query: 181 QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           ++ P   T  L+ LI +    S   + HPATR+FQA RI++N+E+EE+   L+ A + L 
Sbjct: 8   ENEPMVRTGQLAKLISEAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAARILA 67

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSITKKVV----VP 295
             G L V+SFHSLEDR+VK+F    S K   V H IP + A      S   K V     P
Sbjct: 68  PEGRLSVISFHSLEDRMVKRFIRKES-KGPEVPHGIPLTEAQIKELGSANMKTVGKAIKP 126

Query: 296 TQEDVAFNRRSRSAKLR 312
           +++++  N RSRS+ LR
Sbjct: 127 SKQEIDMNPRSRSSVLR 143


>gi|237843145|ref|XP_002370870.1| S-adenosyl-methyltransferase mraW, putative [Toxoplasma gondii
           ME49]
 gi|211968534|gb|EEB03730.1| S-adenosyl-methyltransferase mraW, putative [Toxoplasma gondii
           ME49]
          Length = 1062

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/159 (36%), Positives = 83/159 (52%), Gaps = 11/159 (6%)

Query: 104 VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGIL 163
           +DGV      SS  ++    G    + G LD         A+ VVN      L  I    
Sbjct: 769 IDGVAAANDSSSHGLENAPSGIGGSRGGNLD---------AAQVVNSLPQAALAYIFKTF 819

Query: 164 GEEKQASRIAHAIVKRRQ-SAPFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFV 221
           GEE+ A  IA  IV+ R+     +TT++L  +I+    Y +    I   +R FQALR++V
Sbjct: 820 GEERLAGPIASCIVRYREIHGLLKTTEELRQIIEDCCRYRNPQFVIKTCSRVFQALRMYV 879

Query: 222 NNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKK 260
           N E+E L   L  AE+ LK GG L+++S+HSLEDRL+K+
Sbjct: 880 NQELESLDSLLTHAERLLKPGGRLLILSYHSLEDRLIKQ 918



 Score = 42.7 bits (99), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 22/34 (64%)

Query: 104 VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
           VDG+  DLGVS+ Q+    RGFS    GPLDMR 
Sbjct: 691 VDGIFADLGVSTHQLTAAHRGFSHSIDGPLDMRF 724



 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 4/68 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCG 74
           +HVPV++ +V+  L  +   + +D T G GG++ +  +     G  ++A+DRD  AV+  
Sbjct: 421 EHVPVMVNEVLQYLITSKDGLYIDCTAGGGGHAEAIWRAVEFEGGRLLAIDRDEEAVAAT 480

Query: 75  QETMRDYK 82
           +  MR  +
Sbjct: 481 RNRMRQLR 488


>gi|328462958|gb|EGF34770.1| S-adenosyl-methyltransferase MraW [Lactobacillus rhamnosus MTCC
           5462]
          Length = 231

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 63/182 (34%), Positives = 89/182 (48%), Gaps = 9/182 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H  VLL++  A L        +DAT G GG++R      +N  +IA D+D  A++     
Sbjct: 52  HETVLLKEATAALAVKSDGTYVDATLGRGGHTRQILNQLTNGRLIAFDQDEAAIAAVTRQ 111

Query: 78  MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
                 Q +L    F  L   + D   + VDGV++DLGVSS Q D   RGFS++   PLD
Sbjct: 112 FGTLPPQLTLVHRNFRDLGAALADLDIRQVDGVLYDLGVSSPQFDDSKRGFSYRFDAPLD 171

Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM     + A   VN+    +L RI    GEE   SR+    V+  +  P +  Q LS+
Sbjct: 172 MRMDQRQTLDAKTXVNEWPYAELVRIFSRYGEEHFLSRLR---VELSKLVPKRRLQPLSN 228

Query: 194 LI 195
           L+
Sbjct: 229 LL 230


>gi|221502434|gb|EEE28161.1| S-adenosyl-methyltransferase mraw, putative [Toxoplasma gondii VEG]
          Length = 1189

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 58/159 (36%), Positives = 83/159 (52%), Gaps = 11/159 (6%)

Query: 104  VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGIL 163
            +DGV      SS  ++    G    + G LD         A+ VVN      L  I    
Sbjct: 896  IDGVAAANDSSSHGLENAPSGIGGSRGGNLD---------AAQVVNSLPQAALAYIFKTF 946

Query: 164  GEEKQASRIAHAIVKRRQ-SAPFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFV 221
            GEE+ A  IA  IV+ R+     +TT++L  +I+    Y +    I   +R FQALR++V
Sbjct: 947  GEERLAGPIASCIVRYREIHGLLKTTEELRQIIEDCCRYRNPQFVIKTCSRVFQALRMYV 1006

Query: 222  NNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKK 260
            N E+E L   L  AE+ LK GG L+++S+HSLEDRL+K+
Sbjct: 1007 NQELESLDSLLTHAERLLKPGGRLVILSYHSLEDRLIKQ 1045



 Score = 43.1 bits (100), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 22/33 (66%)

Query: 104 VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
           VDG+  DLGVS+ Q+    RGFS    GPLDMR
Sbjct: 818 VDGIFADLGVSTHQLTAAHRGFSHSIDGPLDMR 850



 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 4/68 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCG 74
           +HVPV++ +V+  L  +   + +D T G GG++ +  +     G  ++A+DRD  AV+  
Sbjct: 548 EHVPVMVNEVLQYLITSKDGLYIDCTAGGGGHAEAIWRAVEFEGGRLLAIDRDEEAVAAT 607

Query: 75  QETMRDYK 82
           +  MR  +
Sbjct: 608 RNRMRQLR 615


>gi|221482188|gb|EEE20549.1| S-adenosyl-methyltransferase mraw, putative [Toxoplasma gondii GT1]
          Length = 1191

 Score = 86.3 bits (212), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 58/159 (36%), Positives = 83/159 (52%), Gaps = 11/159 (6%)

Query: 104  VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGIL 163
            +DGV      SS  ++    G    + G LD         A+ VVN      L  I    
Sbjct: 896  IDGVAAANDSSSHGLENAPSGIGGSRGGNLD---------AAQVVNSLPQAALAYIFKTF 946

Query: 164  GEEKQASRIAHAIVKRRQ-SAPFQTTQDLSSLIQKTV-YFSKNNRIHPATRSFQALRIFV 221
            GEE+ A  IA  IV+ R+     +TT++L  +I+    Y +    I   +R FQALR++V
Sbjct: 947  GEERLAGPIASCIVRYREIHGLLKTTEELRQIIEDCCRYRNPQFVIKTCSRVFQALRMYV 1006

Query: 222  NNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKK 260
            N E+E L   L  AE+ LK GG L+++S+HSLEDRL+K+
Sbjct: 1007 NQELESLDSLLTHAERLLKPGGRLVILSYHSLEDRLIKQ 1045



 Score = 43.1 bits (100), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 22/33 (66%)

Query: 104 VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
           VDG+  DLGVS+ Q+    RGFS    GPLDMR
Sbjct: 818 VDGIFADLGVSTHQLTAAHRGFSHSIDGPLDMR 850



 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 4/68 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCG 74
           +HVPV++ +V+  L  +   + +D T G GG++ +  +     G  ++A+DRD  AV+  
Sbjct: 548 EHVPVMVNEVLQYLITSKDGLYIDCTAGGGGHAEAIWRAVEFEGGRLLAIDRDEEAVAAT 607

Query: 75  QETMRDYK 82
           +  MR  +
Sbjct: 608 RNRMRQLR 615


>gi|207109224|ref|ZP_03243386.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 158

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 88/154 (57%), Gaps = 11/154 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVSCGQET 77
           H  VLL++V+    P    V++D T G GG+S++    K    +I +D+D FA    +E 
Sbjct: 8   HQSVLLQEVLQAFAPLEKGVLIDCTLGLGGHSKAILSQKPHLKLIGIDKDKFAQEIAKER 67

Query: 78  MRDYKEQFSLFQATFSQ-----LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           +++++ +++L    F++     L+ +  +K + GV+ DLGVSS+Q+D  +RGF+F  S  
Sbjct: 68  LKEFEGRYNLLSGGFAKRFKEALETH--NKEIKGVLVDLGVSSLQLDDDNRGFNFH-SHA 124

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGE 165
           LDMRM   S ++A  V+N   V  L +I    GE
Sbjct: 125 LDMRMDLESELNAQKVINSYPVIALEKIFKDYGE 158


>gi|13924472|gb|AAK49020.1|AF195898_1 hypothetical protein [Synechococcus sp. PCC 7002]
          Length = 136

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/133 (36%), Positives = 77/133 (57%), Gaps = 7/133 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           H+ VL E+++A L   P    LD T G GG++    +   +V    +DRD  A++   E 
Sbjct: 7   HISVLKEELVAGLGVKPEGHYLDVTLGGGGHTELILQQYPDVRVTGVDRDSQAIAAASER 66

Query: 78  MRDYKEQFSLFQATFSQLQDYVPD-KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
           ++ + ++F   ++ F +   Y P  +  DG++ DLGVSS+Q D GDRGFSF+   PLDMR
Sbjct: 67  LKSFGDRFRAVRSNFGE---YQPQGEKFDGIIADLGVSSVQFDQGDRGFSFRFDAPLDMR 123

Query: 137 MS-CSGISASDVV 148
           M     ++A+D+V
Sbjct: 124 MDQQQTLTAADIV 136


>gi|317473098|ref|ZP_07932397.1| MraW methylase [Anaerostipes sp. 3_2_56FAA]
 gi|316899436|gb|EFV21451.1| MraW methylase [Anaerostipes sp. 3_2_56FAA]
          Length = 260

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 92/170 (54%), Gaps = 8/170 (4%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCG 74
           G H+ + +++++  L   PG+  LDAT G GG+++   K      ++ ALD D   +   
Sbjct: 76  GMHISICVKEILEFLQIKPGQTGLDATLGYGGHTQEMLKCLDSKGHLYALDVDAIELEKT 135

Query: 75  QETMRDY---KEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           ++ +       E  ++ Q  F+ +     + G  D V+ DLGVSSMQID  DRGFS++  
Sbjct: 136 RKRLEKLGYGPEILTIRQMNFADIDKIAEEAGPFDFVLADLGVSSMQIDNPDRGFSYKTE 195

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
           GPLD+R++   G+SA++ +     ++L  +L    +E  A  IA A+V +
Sbjct: 196 GPLDLRLNPEKGVSAAERLRTITRQELQGMLMENSDEPHADVIARAVVSK 245


>gi|33866828|ref|NP_898387.1| hypothetical protein SYNW2298 [Synechococcus sp. WH 8102]
 gi|33639429|emb|CAE08813.1| conserved hypothetical protein [Synechococcus sp. WH 8102]
          Length = 215

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 91/163 (55%), Gaps = 9/163 (5%)

Query: 20  HVPVLLEKVI--ALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQ 75
           HVPVL E V+      P    +++DAT G GG+S    +   G  +I LD+D  A +   
Sbjct: 8   HVPVLSEAVMDAGRQMPRAEGLLIDATLGGGGHSALMLEQQPGLRLIGLDQDATARAAAA 67

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           E +  + ++ ++    F++   Y P +    V+ DLGVSS Q+D  +RGFSF+  GPLDM
Sbjct: 68  ERLAPFGDRVTIVATNFAE---YTPPEPALMVLADLGVSSPQLDVAERGFSFRLDGPLDM 124

Query: 136 RMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
           RM+    G +A++++++    +L  ++   GEE+ + RIA  I
Sbjct: 125 RMNAVGDGATAAELIDRLEENELADLIYAYGEERLSRRIARRI 167


>gi|255024442|ref|ZP_05296428.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL
           J1-208]
          Length = 126

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 45/107 (42%), Positives = 67/107 (62%), Gaps = 3/107 (2%)

Query: 208 HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF--ASR 265
           HP  R+FQA+RI VN+E+  +   L  A   LK GG + V++FHSLEDR+ K+ F  A++
Sbjct: 14  HPGKRTFQAIRIAVNDELGAVEDSLEKALTLLKPGGRISVITFHSLEDRITKQLFQEATK 73

Query: 266 SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
              +     +IP    P  F+  T+K +VP++E++  N R+RSAKLR
Sbjct: 74  RPDLPPGLPVIPDEYKPD-FKLATRKPIVPSEEELEQNNRARSAKLR 119


>gi|145502845|ref|XP_001437400.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124404550|emb|CAK70003.1| unnamed protein product [Paramecium tetraurelia]
          Length = 277

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 138/294 (46%), Gaps = 35/294 (11%)

Query: 24  LLEKVIALLNPAPGKVI--LDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMR 79
           +LE+V+A         I  +D T G G +S+   +   N  ++ LD D   +    + + 
Sbjct: 5   ILERVLAFQKKTLKNNIDMVDCTIGTGAHSQILLEHVKNLKILGLDIDERMIKNLPQNIT 64

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
             ++ F      F + +     K  D +  DLG +  Q+     G S++K+  LDMR S 
Sbjct: 65  AKQDNF----INFYKHKTLSDTKNFDIIFADLGYNINQVYDESYGLSYKKNSLLDMRYSQ 120

Query: 140 S-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198
           S   +A+D++N  + ++L  I    G   +A+++A  I+  RQ   F+    +  ++ + 
Sbjct: 121 SIQHTAADLLNNRSQQELREIFYHYGNIHKANQLAKIIIDNRQKEKFERANQVVDILNE- 179

Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE-KALKAGGLLIVVSFHSLEDRL 257
              S  ++I    ++FQALRI VN EI  L   L   + + +    L+++++FHSLE   
Sbjct: 180 --LSMGDQI---MKTFQALRIAVNQEINNLNLFLEKVQSQQIVDKQLILIITFHSLEAES 234

Query: 258 VKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           V+KF       +M  +            +  + K + P+++++  N RSRSA L
Sbjct: 235 VQKF-------IMKFK------------KQFSMKTIKPSEDEIKENPRSRSALL 269


>gi|294670598|ref|ZP_06735477.1| hypothetical protein NEIELOOT_02323 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307723|gb|EFE48966.1| hypothetical protein NEIELOOT_02323 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 146

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/128 (40%), Positives = 71/128 (55%), Gaps = 9/128 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMG--SNVIALDRDPFAVSCGQE 76
           HV VLL + +  LN     V +D TFG GG+SR    ++G    ++  D+DP A++   E
Sbjct: 8   HVTVLLHEAVDGLNVVSDGVYVDGTFGRGGHSRLILSRLGEKGRLVVFDKDPQAIAVAHE 67

Query: 77  -TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              RD +   S+    FS  Q  +   G+   DG +FDLG+SS QID G RGFSF+   P
Sbjct: 68  LAARDGR--VSVIHDGFSSFQTALDGLGIGQIDGTLFDLGISSPQIDDGSRGFSFRFDAP 125

Query: 133 LDMRMSCS 140
           LDMRM  +
Sbjct: 126 LDMRMDTT 133


>gi|213861638|ref|ZP_03386108.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
          Length = 88

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/87 (47%), Positives = 59/87 (67%), Gaps = 1/87 (1%)

Query: 169 ASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEEL 228
           A RIA AIV+R +  P   T++L+ ++       K+   HPATR+FQA+RI+VN+E+EE+
Sbjct: 3   AKRIARAIVERNREQPMTRTKELAEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEI 61

Query: 229 AQGLRSAEKALKAGGLLIVVSFHSLED 255
            Q L+S+   L  GG L ++SFHSLED
Sbjct: 62  EQALKSSLNVLAPGGRLSIISFHSLED 88


>gi|33322183|gb|AAQ06812.1|AF496152_1 hypothetical protein [Lactobacillus delbrueckii subsp. lactis]
          Length = 119

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/98 (42%), Positives = 63/98 (64%), Gaps = 1/98 (1%)

Query: 103 GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILG 161
           G+DG+ +DLGVSS Q+D  +RGFS++    LDMRM  S    A  +VNQ + K L  +L 
Sbjct: 15  GIDGIYYDLGVSSPQLDQAERGFSYRFDARLDMRMDQSQDFDAYQLVNQYDQKQLADVLY 74

Query: 162 ILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199
             G+EK + +IA  IV+RR+  P +TT +L  +I++ +
Sbjct: 75  RYGDEKFSRQIARKIVERRRVKPIETTFELVEIIKEAI 112


>gi|266624101|ref|ZP_06117036.1| MraW methylase family protein [Clostridium hathewayi DSM 13479]
 gi|288864070|gb|EFC96368.1| MraW methylase family protein [Clostridium hathewayi DSM 13479]
          Length = 150

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/153 (35%), Positives = 87/153 (56%), Gaps = 14/153 (9%)

Query: 172 IAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRI--HPATRSFQALRIFVNNEIEELA 229
           IA  IV+ R++   +TT +L+ +I++ V  +K   +  HP+ ++FQA+RI +N E+E L 
Sbjct: 3   IAKHIVRARETKRIETTGELTEIIKEAVP-AKVRAVGGHPSKKTFQAIRIELNQELEVLN 61

Query: 230 QGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---- 285
             + +    L  GG L V++FHSLEDR+VK  F +            P +    V     
Sbjct: 62  NSIDTMIDLLNPGGRLAVITFHSLEDRIVKIRFRNNENPCTC-----PPDFPVCVCGKVS 116

Query: 286 --QSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
             + IT+K VVP++E++  N+RS+S+KLR   R
Sbjct: 117 KGRVITRKPVVPSEEEINGNKRSKSSKLRVFER 149


>gi|261330354|emb|CBH13338.1| S-adenosyl-methyltransferase mraW-like protein,putative
           [Trypanosoma brucei gambiense DAL972]
          Length = 474

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 122/238 (51%), Gaps = 21/238 (8%)

Query: 40  ILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQL 95
           +LD T G+G ++ +  + G   + V+ALD D  A+   ++ + ++  ++F  +    S+ 
Sbjct: 130 VLDCTLGSGYHAGAVLENGGPYTRVVALDCDHDAMHAARDLVEEFGGDRFRFYCCKMSEA 189

Query: 96  QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP--LDMRMSCS-GISASDVVNQAN 152
           +    ++  D ++ D GVS  Q++  +RGF     G   LDMR     G+ A + +N  +
Sbjct: 190 KAMFGERSFDAIMIDGGVSDTQLEDPERGFLLDDEGGHRLDMRFGPQMGVGALEYLNTVS 249

Query: 153 VKDLTRILGILG--EEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV-------YFSK 203
              L   L + G  E  QA +++ AI +R+   PF  ++++ + I++         + S+
Sbjct: 250 QHTLVSSLLVYGLLEYGQAMKMSRAITRRK---PFVDSREVLTCIEQAGDELPEGGWRSQ 306

Query: 204 NNRIH-PATRSF-QALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259
            +R   P +  F  +LR  +NNE+ EL QG+ +A   L+  G L+V S    E+RLV+
Sbjct: 307 GSRRKSPMSWKFLTSLRCIINNEMYELRQGIENALLMLRDDGRLVVFSRLPWEERLVR 364


>gi|260889238|ref|ZP_05900501.1| MraW methylase family protein [Leptotrichia hofstadii F0254]
 gi|260860649|gb|EEX75149.1| MraW methylase family protein [Leptotrichia hofstadii F0254]
          Length = 129

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 48/129 (37%), Positives = 78/129 (60%), Gaps = 3/129 (2%)

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           +L+ ++ K++   K+ + HPA R+FQA+RIFVN E+E L++ L  A K L   G L+V++
Sbjct: 2   ELADIVIKSI--GKSMKRHPAKRTFQAIRIFVNKELEVLSETLDKAVKLLNKNGRLLVIT 59

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK+ F          + + I      ++ + ITKK ++  + ++  N R+ S
Sbjct: 60  FHSLEDRIVKEKFREYEDPCTCPKDIPICVCNKKSLGKIITKKPIIAKKIELEENNRAHS 119

Query: 309 AKLRAGMRT 317
           AKLR   R+
Sbjct: 120 AKLRIFERS 128


>gi|295115795|emb|CBL36642.1| Predicted S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [butyrate-producing
           bacterium SM4/1]
          Length = 299

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 92/174 (52%), Gaps = 8/174 (4%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCG 74
           G H+ + +++++   +  PG+V LDAT G GG++R   K      ++  LD DP      
Sbjct: 84  GMHISICVKEILDFFDIRPGQVGLDATLGYGGHTREMLKKLQGQGHIYGLDVDPIESEKT 143

Query: 75  QETMRDY---KEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           ++ + D     +  ++    F+ +     + G  D ++ DLGVSSMQID  +RGF+++  
Sbjct: 144 KKRLADAGFGPDILTVKLMNFADIDKVAEEAGPFDFILADLGVSSMQIDNPERGFTYKYE 203

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           GPLD+RM  + G +A++ +   + ++   +L    +E  A  I+H +  R ++ 
Sbjct: 204 GPLDLRMDPTRGETAAERLKGMDREEFCGMLMENSDEPYAEEISHTVFSRLETG 257


>gi|289426838|ref|ZP_06428564.1| MraW methylase family protein [Propionibacterium acnes J165]
 gi|289159927|gb|EFD08105.1| MraW methylase family protein [Propionibacterium acnes J165]
          Length = 165

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 46/142 (32%), Positives = 82/142 (57%), Gaps = 9/142 (6%)

Query: 20  HVPVLLEKVIALLN---PAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCG 74
           H+PV+  +++ LL     +  +V +D T G GG++ +  +   +V  + +DRD  A++  
Sbjct: 12  HIPVMRARILDLLAVVLKSGRRVHVDGTLGMGGHAEAVLRRFPDVELVGIDRDQQALTMA 71

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +  +  + ++  L  A   +L + + D G   VD V+ DLG+SS QID  +RGFS+    
Sbjct: 72  EARLEPFADRVHLVHAVHDELPEVLDDLGLDYVDSVLLDLGLSSFQIDEVERGFSYSVDS 131

Query: 132 PLDMRMS-CSGISASDVVNQAN 152
           PLDMRM   SG +A+ ++N+++
Sbjct: 132 PLDMRMDQSSGRTAAQILNESD 153


>gi|115691196|ref|XP_001203985.1| PREDICTED: similar to methyltransferase 5 domain containing 1,
           partial [Strongylocentrotus purpuratus]
 gi|115735657|ref|XP_001187798.1| PREDICTED: similar to methyltransferase 5 domain containing 1,
           partial [Strongylocentrotus purpuratus]
          Length = 140

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/114 (37%), Positives = 66/114 (57%), Gaps = 5/114 (4%)

Query: 208 HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK-----KFF 262
           H AT++FQALRIFVNNE+ ELA  + +A   ++ GG L V++FHSLEDR+VK     +  
Sbjct: 26  HTATKTFQALRIFVNNELNELAVAVEAAWDLMRPGGKLAVLTFHSLEDRVVKRSLQGRHV 85

Query: 263 ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           A R   +   R     +     ++ + +  +    E++  N R+RSAKLR  ++
Sbjct: 86  AERGTSLRQKRVESHKDNGAQKWEVVKRNELCADDEEINMNPRARSAKLRTAIK 139


>gi|218508136|ref|ZP_03506014.1| S-adenosyl-methyltransferase MraW [Rhizobium etli Brasil 5]
          Length = 71

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/53 (64%), Positives = 43/53 (81%)

Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVS 72
          H+PVLLE+V+A L PAPGK+ILD TFGAGGY+ +    G+ VIALDRDP A++
Sbjct: 19 HIPVLLEEVLAALAPAPGKLILDGTFGAGGYTSAILAAGAEVIALDRDPTAIA 71


>gi|72392687|ref|XP_847144.1| S-adenosyl-methyltransferase mraW-like protein [Trypanosoma brucei
           TREU927]
 gi|62176037|gb|AAX70159.1| S-adenosyl-methyltransferase mraW-like protein, putative
           [Trypanosoma brucei]
 gi|70803174|gb|AAZ13078.1| S-adenosyl-methyltransferase mraW-like protein, putative
           [Trypanosoma brucei brucei strain 927/4 GUTat10.1]
          Length = 474

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 120/238 (50%), Gaps = 21/238 (8%)

Query: 40  ILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQL 95
           +LD T G+G ++ +  + G   + V+ALD D  A+   ++ + ++  ++   +    S+ 
Sbjct: 130 VLDCTLGSGYHAGAVLENGGPYTRVVALDCDHDAMHAARDLVEEFGGDRLRFYCCKMSEA 189

Query: 96  QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP--LDMRMSCS-GISASDVVNQAN 152
           +    ++  D ++ D GVS  Q++  +RGF     G   LDMR     G+ A + +N  +
Sbjct: 190 KAMFGERSFDAIMIDGGVSDTQLEDPERGFLLDDEGGHRLDMRFGPQMGVGALEYLNTVS 249

Query: 153 VKDLTRILGILG--EEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV-------YFSK 203
              L   L   G  E  QA +++ AI +R+   PF  ++++ + I++         + S+
Sbjct: 250 QHTLVSSLLAYGLLEYGQAMKMSRAITRRK---PFVDSREVLTCIEQAGDELPEGGWRSQ 306

Query: 204 NNRIH-PATRSF-QALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259
            +R   P +  F  +LR  +NNE+ EL QG+ +A   L+  G L+V S    E+RLV+
Sbjct: 307 GSRRKSPMSWKFLTSLRCIINNEMYELRQGIENALLMLRDDGRLVVFSRLPWEERLVR 364


>gi|68065600|ref|XP_674783.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56493579|emb|CAH96215.1| conserved hypothetical protein [Plasmodium berghei]
          Length = 220

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 98/169 (57%), Gaps = 21/169 (12%)

Query: 146 DVVNQANVKDLTRILGILGEEKQASRIAHAIVK-RRQSAPFQTTQDLSSLIQKTV--YFS 202
           D++N  N+K L  I+   GEEK+A +IA  I++ R+++    TT DL ++I  T    + 
Sbjct: 64  DILNTYNLKKLKYIIQKFGEEKKAFKIAKKIIEWRKKNGEIITTFDLKNIILSTCKNNYK 123

Query: 203 KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF 262
            NN++   +R FQ+ RI++N+E+  L   L S+ K LK GG+LIV+S+HSLE++ +  F 
Sbjct: 124 SNNKV--LSRVFQSFRIYINSELLSLKNLLLSSHKILKQGGVLIVISYHSLENKYIDLFV 181

Query: 263 ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
            +++                 ++  I  + +VPT +++  N+ SRSAK+
Sbjct: 182 KNKT----------------KLWNQINIQPIVPTDQEIKLNKSSRSAKM 214


>gi|70927460|ref|XP_736113.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56510372|emb|CAH87288.1| hypothetical protein PC302411.00.0 [Plasmodium chabaudi chabaudi]
          Length = 243

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 117/253 (46%), Gaps = 59/253 (23%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCG 74
           DH P+LL            + ++DAT G GG++    + F K+   VI++D+D  A+   
Sbjct: 4   DH-PILLHN--------QNEYMIDATLGGGGHTLEILKKFTKLK--VISIDKDIEAIYYN 52

Query: 75  QETMRDY--KEQFSLFQATFSQ---LQDY--VPD-KGVDGVVFDLGVSSMQIDCGDRGFS 126
           +  ++ Y    +  L    +     L +Y  +P       ++ DLGVS+ Q+    RGFS
Sbjct: 53  KYKLKSYIDTNRLKLIHGNYKDILFLLNYHSLPLFNSYSAILVDLGVSTHQLKSSKRGFS 112

Query: 127 FQKSGPLDMRMSC-------------------------------SGISASDVVNQANVKD 155
           ++ +  LDM M+                                 G    +++N  N+K 
Sbjct: 113 YKYNNILDMNMNKYTEKEYVENYINKELKQDNEIKELYMTSEIEDGKKIHNILNTYNLKK 172

Query: 156 LTRILGILGEEKQASRIAHAIVK-RRQSAPFQTTQDLSSLIQKTV--YFSKNNRIHPATR 212
           L  I+   GEEK+A +IA  I++ R+Q+    TT DL ++I  T    +  NN++   +R
Sbjct: 173 LKYIIQKFGEEKKAFKIAKKIIEWRKQNKEIVTTFDLKNIILSTCKNNYKSNNKV--LSR 230

Query: 213 SFQALRIFVNNEI 225
            FQA RI+VNNE+
Sbjct: 231 VFQAFRIYVNNEL 243


>gi|330981225|gb|EGH79328.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 122

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 47/109 (43%), Positives = 64/109 (58%), Gaps = 6/109 (5%)

Query: 208 HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRS- 266
           +PATR+FQ LRI VNNE+ +L  GL +A  AL+ GG L+V+SFHSLEDR+VK F    + 
Sbjct: 10  NPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLVVISFHSLEDRIVKLFMRKLAK 69

Query: 267 GKVMAVRHMIPSNAHPAVFQ---SITKKVVVPTQEDVAFNRRSRSAKLR 312
           G+   +   +P    P  F+    I  K    +  +   N RSRSA +R
Sbjct: 70  GEADNMPRNLPIQYKP--FEPKIKIHGKAQFASDVETKANPRSRSAVMR 116


>gi|307069557|ref|YP_003878034.1| S-adenosyl-methyltransferase MraW [Candidatus Zinderia insecticola
           CARI]
 gi|306482817|gb|ADM89688.1| S-adenosyl-methyltransferase MraW [Candidatus Zinderia insecticola
           CARI]
          Length = 285

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 60/258 (23%), Positives = 123/258 (47%), Gaps = 25/258 (9%)

Query: 17  IGDHVPVLLEKVIALL-NPAPGK-VILDATFGAGGY--SRSFCKMGSNVIALDRDPFAVS 72
           I +  P+L+ ++  +L N    K + +DAT G   +    +       ++A ++D    +
Sbjct: 3   INNKFPILISEIFNILKNIKINKDIFIDATMGMAKHLKKINKKIEIKKILAFEKDNLIFN 62

Query: 73  CGQETMR-------DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125
             +  M+       ++K  F + +    +  +++        +FDLG+S  QI     GF
Sbjct: 63  RNKIKMKKIFIVNDNFKNIFKILKLLKIKKINFI--------LFDLGISLFQI-INKNGF 113

Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           S++K+  LDMR++      A  ++N    + + +I      +K   +I + I+  R+   
Sbjct: 114 SYKKNSLLDMRINNKLNKPAYKILNNYKKEKILKIFNYYRNKKYFFKIVNLIIYNRKKKE 173

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
            + T DL ++I+K    +KN   +  ++ FQ +R ++N +   L   L++        G+
Sbjct: 174 IKKTFDLINIIKKVT--NKNKINNYISKIFQIIRNYINKD--NLKNILKNIILKYLYKGI 229

Query: 245 LIVVSFHSLEDRLVKKFF 262
           +I++SFHS+ED ++K  F
Sbjct: 230 IIIISFHSIEDNIIKNMF 247


>gi|325119263|emb|CBZ54817.1| putative S-adenosyl-methyltransferase mraW [Neospora caninum
           Liverpool]
          Length = 1044

 Score = 69.7 bits (169), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 44/121 (36%), Positives = 68/121 (56%), Gaps = 5/121 (4%)

Query: 142 ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQTTQDLSSLIQKTV- 199
           + A+ VVN      L  I  + GEE  A  IA  IV+ R++    + T++L  +++    
Sbjct: 780 LDAAQVVNGLPQAALASIFKLYGEEPLAELIAACIVRHRETRGTLRATEELREIVEGCCR 839

Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259
           Y +    I   +R FQ   ++VN E+E L   L  AE+ LK GG L+++S+HSLEDRL+K
Sbjct: 840 YRNPQFIIKTCSRVFQ---MYVNQELEVLDLLLTHAERLLKPGGRLVILSYHSLEDRLIK 896

Query: 260 K 260
           +
Sbjct: 897 Q 897



 Score = 43.5 bits (101), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 22/45 (48%), Positives = 26/45 (57%)

Query: 104 VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVV 148
           VDG+  DLGVS+ Q++   RGFS    GPLDMR      SA   V
Sbjct: 670 VDGIFADLGVSTHQLNAAHRGFSHSIPGPLDMRFGRDKSSACGAV 714



 Score = 43.1 bits (100), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 6/105 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGY----SRSFCKMGSNVIALDRDPFAVSCG 74
           +HVPV++++V+  L  A   V +D T G GG+     R+    G  ++A+DRD  AV   
Sbjct: 402 EHVPVMVQEVLQYLITAKDGVYVDCTAGGGGHVEAIWRAVASEGGRLLAIDRDEEAVEAT 461

Query: 75  QETMRDY--KEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQ 117
           +  +R    +E   L   T +  ++     G +    D G SS++
Sbjct: 462 RNRLRQLQAREGCDLGDTTCTNPREDKVVHGTESAKTDPGSSSVE 506


>gi|258539487|ref|YP_003173986.1| methyltransferase [Lactobacillus rhamnosus Lc 705]
 gi|257151163|emb|CAR90135.1| Methyltransferase [Lactobacillus rhamnosus Lc 705]
          Length = 115

 Score = 69.3 bits (168), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 41/103 (39%), Positives = 60/103 (58%), Gaps = 3/103 (2%)

Query: 212 RSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMA 271
           + FQA+RI VN+E+  L   L  A K +  GG + V++F SLEDRLVK  F   S     
Sbjct: 7   KVFQAIRIAVNDELSALEASLEQALKLINVGGRISVITFQSLEDRLVKTMFKEVSTVQDV 66

Query: 272 VRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
            R +  +P  A P  +Q + +K ++P+  ++A N R+ SAKLR
Sbjct: 67  PRGLPVVPEAAQPH-YQLVNRKPILPSAAELAENHRAHSAKLR 108


>gi|322491999|emb|CBZ27273.1| S-adenosyl-methyltransferase mraW-like protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 489

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/256 (25%), Positives = 120/256 (46%), Gaps = 21/256 (8%)

Query: 40  ILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDY-KEQFSLFQATFSQL 95
           +LD TFG+G ++    + G   + V+A+D D  A    +E + ++  ++F  F    S+ 
Sbjct: 144 VLDCTFGSGFHTGVVLENGRPYTRVVAMDCDLEATVSAREIVDEFGADRFRFFARPMSEA 203

Query: 96  QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF--QKSGPLDMRMSCS-GISASDVVNQAN 152
           +    ++  D V+ D G S  Q++  +RGF    +    LDMR   + G+ A + +N   
Sbjct: 204 KAMFGERSFDAVMIDPGPSLTQLENPERGFLLDDESDHALDMRYGPTHGLGALEYLNTVP 263

Query: 153 VKDLTRILGI--LGEEKQASRIAHAIVKRRQSAPFQTTQDL--------SSLIQKTVYFS 202
              L+  L    L   +Q+ ++A AI +RR   PF   Q +        + L ++     
Sbjct: 264 QHALSSALASYELLTPQQSMKLARAIRQRR---PFDGAQRVLEAVEEAGNELPEEGWGTQ 320

Query: 203 KNNRIHPATRSFQ-ALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKF 261
            + R    + +F  +LR  VN+E  EL++ L++A   L+  G L+V S    E+RL+   
Sbjct: 321 GSRRKTSMSWNFMTSLRCIVNHERHELSEALQNALLLLRTDGRLVVFSRLPWEERLISTT 380

Query: 262 FASRSGKVMAVRHMIP 277
            +     +++    IP
Sbjct: 381 VSQHPHALLSYSEAIP 396


>gi|157869826|ref|XP_001683464.1| S-adenosyl-methyltransferase mraW-like protein [Leishmania major]
 gi|68126529|emb|CAJ04793.1| S-adenosyl-methyltransferase mraW-like protein [Leishmania major
           strain Friedlin]
          Length = 489

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/256 (25%), Positives = 121/256 (47%), Gaps = 21/256 (8%)

Query: 40  ILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDY-KEQFSLFQATFSQL 95
           +LD TFG+G ++    + G   + V+A+D D  A    +E + ++  ++F  +    S+ 
Sbjct: 144 VLDCTFGSGFHTGVVLENGRPYTRVVAMDCDVEATVSAREIVDEFGADRFRFYARPMSEA 203

Query: 96  QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF--QKSGPLDMRMSCS-GISASDVVNQAN 152
           +    ++  D V+ D G SS Q++  +RGF    +    LDMR   + G+ A + +N   
Sbjct: 204 KAMFGERSFDAVMIDPGPSSTQLENPERGFLLNDESDHALDMRYGPTHGLGALEYLNTVP 263

Query: 153 VKDLTRILGI--LGEEKQASRIAHAIVKRRQSAPFQTTQDL--------SSLIQKTVYFS 202
              L+  L    L   +Q+ ++A AI +RR   PF   Q +        + L ++     
Sbjct: 264 QHALSGALASYELLTPQQSMKLARAIRQRR---PFDGAQRVLEAVEEAGNELPEEGWGTQ 320

Query: 203 KNNRIHPATRSFQ-ALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKF 261
            + R    + +F  +LR  VN+E  EL++ L++A   L+  G L+V S    E++L+   
Sbjct: 321 GSRRKTSMSWNFMTSLRCIVNHERHELSEALQNALLLLRTDGRLVVFSRLPWEEKLISTT 380

Query: 262 FASRSGKVMAVRHMIP 277
            +     +++    IP
Sbjct: 381 ISQHPHALLSYSEAIP 396


>gi|207111120|ref|ZP_03245282.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 65

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 34/67 (50%), Positives = 45/67 (67%), Gaps = 3/67 (4%)

Query: 164 GEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNN 223
           GE K+  +IAH I +RR   PF+  +DLS  +     FSKN +IHPAT  FQA+RI VN+
Sbjct: 2   GEIKEYKKIAHKIAERRAKKPFKDAKDLSEFLSS---FSKNKKIHPATLVFQAVRIEVNS 58

Query: 224 EIEELAQ 230
           E+EEL +
Sbjct: 59  ELEELKE 65


>gi|163784407|ref|ZP_02179294.1| hypothetical protein HG1285_12402 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880321|gb|EDP73938.1| hypothetical protein HG1285_12402 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 115

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 65/114 (57%), Gaps = 8/114 (7%)

Query: 19  DHVPVLLEKVIAL--LNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCG 74
           +H PVL ++V+    L  +  + ILDAT G GG+S    K   N  +I LD+D +A+   
Sbjct: 3   EHYPVLKDEVVKFFTLIESGKEYILDATVGGGGHSYLILKNFPNRKIIGLDKDDYALKRA 62

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGF 125
           +E ++++K ++ L ++ F  L   + +  +D   GV+FD GVS  Q+   +RGF
Sbjct: 63  EEKLKEFKGRYILIKSAFKDLDKVLENLNIDKLAGVLFDFGVSHFQLKL-ERGF 115


>gi|322499261|emb|CBZ34334.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 489

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 132/296 (44%), Gaps = 40/296 (13%)

Query: 40  ILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDY-KEQFSLFQATFSQL 95
           +LD TFG+G ++    + G   + V+A+D D  A    +E + ++  ++F  +    S+ 
Sbjct: 144 VLDCTFGSGFHTGVVLENGRPYTRVVAMDCDVEATVSAREIVDEFGADRFRFYARPMSEA 203

Query: 96  QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF--QKSGPLDMRMSCS-GISASDVVNQAN 152
           +    ++  D V+ D G S  Q++  +RGF    +    LDMR   + G+ A + +N   
Sbjct: 204 KAMFGERSFDAVMIDPGPSLTQLENPERGFLLDDESDHALDMRYGPTHGLGALEYLNTVP 263

Query: 153 VKDLTRILGI--LGEEKQASRIAHAIVKRRQSAPFQTTQDL--------SSLIQKTVYFS 202
              L+  L    L   +Q+ ++A AI +RR   PF   Q +        + L ++     
Sbjct: 264 QHALSGALASYELLTPQQSMKLARAIRQRR---PFDGAQRVLEAVEEAGNELPEEGWGTQ 320

Query: 203 KNNRIHPATRSFQ-ALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKF 261
            + R    + +F  +LR  VN+E  EL++ L++A   L+  G L+V S    E++L+   
Sbjct: 321 DSRRKTSMSWNFMTSLRCIVNHERHELSEALQNALLLLRTDGRLVVFSRLPWEEKLISTT 380

Query: 262 FASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
            +                 HP    S ++ + +   EDV  +  SR  K+    RT
Sbjct: 381 ISQ----------------HPHALLSYSEAIPI---EDVQDHGHSRHTKMWIATRT 417


>gi|146087428|ref|XP_001465817.1| S-adenosyl-methyltransferase mraW-like protein [Leishmania infantum
           JPCM5]
 gi|134069917|emb|CAM68246.1| S-adenosyl-methyltransferase mraW-like protein [Leishmania infantum
           JPCM5]
          Length = 489

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 132/296 (44%), Gaps = 40/296 (13%)

Query: 40  ILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDY-KEQFSLFQATFSQL 95
           +LD TFG+G ++    + G   + V+A+D D  A    +E + ++  ++F  +    S+ 
Sbjct: 144 VLDCTFGSGFHTGVVLENGRPYTRVVAMDCDVEATVSAREIVDEFGADRFRFYARPMSEA 203

Query: 96  QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF--QKSGPLDMRMSCS-GISASDVVNQAN 152
           +    ++  D V+ D G S  Q++  +RGF    +    LDMR   + G+ A + +N   
Sbjct: 204 KAMFGERSFDAVMIDPGPSLTQLENPERGFLLDDESDHALDMRYGPTHGLGALEYLNTVP 263

Query: 153 VKDLTRILGI--LGEEKQASRIAHAIVKRRQSAPFQTTQDL--------SSLIQKTVYFS 202
              L+  L    L   +Q+ ++A AI +RR   PF   Q +        + L ++     
Sbjct: 264 QHALSGALASYELLTPQQSMKLARAIRQRR---PFDGAQRVLEAVEEAGNELPEEGWGTQ 320

Query: 203 KNNRIHPATRSFQ-ALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKF 261
            + R    + +F  +LR  VN+E  EL++ L++A   L+  G L+V S    E++L+   
Sbjct: 321 DSRRKTSMSWNFMTSLRCIVNHERHELSEALQNALLLLRTDGRLVVFSRLPWEEKLISTT 380

Query: 262 FASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
            +                 HP    S ++ + +   EDV  +  SR  K+    RT
Sbjct: 381 ISQ----------------HPHALLSYSEAIPI---EDVQDHGHSRHTKMWIATRT 417


>gi|317473099|ref|ZP_07932398.1| S-adenosyl-methyltransferase MraW [Anaerostipes sp. 3_2_56FAA]
 gi|316899437|gb|EFV21452.1| S-adenosyl-methyltransferase MraW [Anaerostipes sp. 3_2_56FAA]
          Length = 115

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/107 (38%), Positives = 56/107 (52%), Gaps = 18/107 (16%)

Query: 212 RSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFAS--RSGKV 269
           R+FQALRI VN+E E L + L      L  GG   +++FHS EDRLVKK F    R G  
Sbjct: 24  RTFQALRIDVNSEFEVLYEFLEKLPNVLAKGGRAAILTFHSGEDRLVKKSFKRLLREG-- 81

Query: 270 MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
                         V+Q I+  V+ P+ E+   N R+RS K+R  ++
Sbjct: 82  --------------VYQEISTDVIRPSAEECRMNSRARSTKMRWAIK 114


>gi|322505001|emb|CAM36637.2| S-adenosyl-methyltransferase mraW-like protein [Leishmania
           braziliensis MHOM/BR/75/M2904]
          Length = 491

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 123/257 (47%), Gaps = 23/257 (8%)

Query: 40  ILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDY-KEQFSLFQATFSQL 95
           +LD TFG+G ++    + G   + V+A+D D  A    ++   ++  ++F  +    S+ 
Sbjct: 146 VLDCTFGSGFHTGVVLENGRPYTRVVAMDCDVAATVSARKIADEFGAKRFRFYARPMSEA 205

Query: 96  QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF--QKSGPLDMRMSC-SGISASDVVNQAN 152
           +    ++  D V+ D G S  Q++  +RGF    +    LDMR      + A + +N   
Sbjct: 206 KAMFGERSFDAVMIDPGPSFTQLENPERGFLLGDESDHALDMRYGLMYKLGALEYLNTVP 265

Query: 153 VKDLTRILGI--LGEEKQASRIAHAIVKRRQSAPF-------QTTQDLSSLIQKTVYFSK 203
              L+  L    L   +Q+ ++A AI +RR   PF       +  ++  + + +  + S+
Sbjct: 266 QHALSGALASYELLTPQQSMKLARAIRQRR---PFGGAHRVLEVVEEAGNELPEEGWMSQ 322

Query: 204 NNRIHPATRSFQ---ALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKK 260
            +R    + S+    +LR  VN+E +EL++ L++A   L+A G L+V S    E++L+  
Sbjct: 323 GSR-RKTSMSWNFITSLRCIVNHERQELSEALQNALLLLRADGRLVVFSRLLWEEKLISA 381

Query: 261 FFASRSGKVMAVRHMIP 277
             +     +++   +IP
Sbjct: 382 TISQHPHALLSYSEVIP 398


>gi|322827176|gb|EFZ31465.1| S-adenosyl-methyltransferase mraW-like protein, putative
           [Trypanosoma cruzi]
          Length = 516

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 65/256 (25%), Positives = 121/256 (47%), Gaps = 21/256 (8%)

Query: 40  ILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDY-KEQFSLFQATFSQL 95
           +LD T G G ++ +  + G   + V+ALD D   +    E + ++  ++F  F    S+ 
Sbjct: 172 VLDCTLGGGYHAGAVLENGGPYTRVVALDCDHDVMQTAMELVDEFGADRFKFFCRQMSEA 231

Query: 96  QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF--QKSGPLDMRMSCS-GISASDVVNQAN 152
           +    ++  D V+ D G S  Q++  +RGF    + S  LDMR     GI A   +N   
Sbjct: 232 KSLFGERSFDAVMIDPGPSETQLENPERGFLLDDENSHHLDMRYGSQLGIGALAYLNTVP 291

Query: 153 VKDLTRILGILG--EEKQASRIAHAIVKRRQSAPFQTTQDL-------SSLIQKTVYFSK 203
              L+  L   G    +Q+ ++A  +  RR   PF +++D+         ++ + V+ ++
Sbjct: 292 QHALSGALSAYGLLTPEQSMKMAREVRCRR---PFTSSRDVIGCVEAAGDMLPEEVWSTQ 348

Query: 204 NNRIHP--ATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKF 261
           ++R     + + F +LR  +NNE+ EL + L +A   L+  G L+V S    E+RL++  
Sbjct: 349 SSRRKTPMSWKFFTSLRCILNNEMYELREALENALLLLRDDGRLVVFSRLMWEERLIQST 408

Query: 262 FASRSGKVMAVRHMIP 277
             S    ++     +P
Sbjct: 409 VESHPHALLCYTEDVP 424


>gi|71412140|ref|XP_808269.1| S-adenosyl-methyltransferase mraW-like protein [Trypanosoma cruzi
           strain CL Brener]
 gi|70872439|gb|EAN86418.1| S-adenosyl-methyltransferase mraW-like protein, putative
           [Trypanosoma cruzi]
          Length = 464

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 65/256 (25%), Positives = 121/256 (47%), Gaps = 21/256 (8%)

Query: 40  ILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDY-KEQFSLFQATFSQL 95
           +LD T G G ++ +  + G   + V+ALD D   +    E + ++  ++F  F    S+ 
Sbjct: 120 VLDCTLGGGYHAGAVLENGGPYTRVVALDCDHDVMQTAMELVDEFGADRFKFFCRQMSEA 179

Query: 96  QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF--QKSGPLDMRMSCS-GISASDVVNQAN 152
           +    ++  D V+ D G S  Q++  +RGF    + S  LDMR     GI A   +N   
Sbjct: 180 KSLFGERSFDAVMIDPGPSETQLENPERGFLLDDENSHHLDMRYGPQLGIGALAYLNTVP 239

Query: 153 VKDLTRILGILG--EEKQASRIAHAIVKRRQSAPFQTTQDL-------SSLIQKTVYFSK 203
              L+  L   G    +Q+ ++A  +  RR   PF +++D+         ++ + V+ ++
Sbjct: 240 QHALSGALSAYGLLTPEQSMKMAREVRCRR---PFTSSRDVIGCVEAAGDMLPEEVWSTQ 296

Query: 204 NNRIHP--ATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKF 261
           ++R     + + F +LR  +NNE+ EL + L +A   L+  G L+V S    E+RL++  
Sbjct: 297 SSRRKTPMSWKFFTSLRCILNNEMYELREALENALLLLRDDGRLVVFSRLMWEERLIQST 356

Query: 262 FASRSGKVMAVRHMIP 277
             S    ++     +P
Sbjct: 357 VESHPHALLCYTEDVP 372


>gi|154337952|ref|XP_001565202.1| S-adenosyl-methyltransferase mraW-like protein [Leishmania
           braziliensis MHOM/BR/75/M2904]
          Length = 491

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 123/257 (47%), Gaps = 23/257 (8%)

Query: 40  ILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDY-KEQFSLFQATFSQL 95
           +LD TFG+G ++    + G   + V+A+D D  A    ++   ++  ++F  +    S+ 
Sbjct: 146 VLDCTFGSGFHTGVVLENGRPYTRVVAMDCDVAATVSARKIADEFGAKRFRFYARPMSEA 205

Query: 96  QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF--QKSGPLDMRMSC-SGISASDVVNQAN 152
           +    ++  D V+ D G S  Q++  +RGF    +    LDMR      + A + +N   
Sbjct: 206 KAMFGERSFDAVMIDPGPSFTQLENPERGFLLGDESDHALDMRYGLMYKLGALEYLNTVP 265

Query: 153 VKDLTRILGI--LGEEKQASRIAHAIVKRRQSAPF-------QTTQDLSSLIQKTVYFSK 203
              L+  L    L   +Q+ ++A AI +RR   PF       +  ++  + + +  + S+
Sbjct: 266 QHALSGALASYELLTPQQSMKLARAIRQRR---PFGGAHRVLEVVEEAGNELPEEGWMSQ 322

Query: 204 NNRIHPATRSFQ---ALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKK 260
            +R    + S+    +LR  VN+E +EL++ L++A   L+A G L+V S    E++L+  
Sbjct: 323 GSR-RKTSMSWNFITSLRCIVNHERQELSEPLQNALLLLRADGRLVVFSRLLWEEKLISA 381

Query: 261 FFASRSGKVMAVRHMIP 277
             +     +++   +IP
Sbjct: 382 TISQHPHALLSYSEVIP 398


>gi|71424845|ref|XP_812929.1| S-adenosyl-methyltransferase mraW-like protein [Trypanosoma cruzi
           strain CL Brener]
 gi|70877764|gb|EAN91078.1| S-adenosyl-methyltransferase mraW-like protein, putative
           [Trypanosoma cruzi]
          Length = 464

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/256 (25%), Positives = 122/256 (47%), Gaps = 21/256 (8%)

Query: 40  ILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDY-KEQFSLFQATFSQL 95
           +LD T G G ++ +  + G   + V+ALD D   +    E + ++  ++F  F    S+ 
Sbjct: 120 VLDCTLGGGYHAGAVLENGGPYTRVVALDCDHDVMQTAMELVDEFGADRFKFFCRQMSEA 179

Query: 96  QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF--QKSGPLDMRMSCS-GISASDVVNQAN 152
           +    ++  D V+ D G S  Q++  +RGF    + S  LDMR     GI A   +N   
Sbjct: 180 KSLFGERSFDAVMIDPGPSETQLENPERGFLLDDENSHHLDMRYGPQLGIGALAYLNTVP 239

Query: 153 VKDLTRILGI--LGEEKQASRIAHAIVKRRQSAPFQTTQDL-------SSLIQKTVYFSK 203
              L+  L    L   +Q+ ++A  + +RR   PF +++D+         ++ + V+ ++
Sbjct: 240 QHALSGALSAYALLTPEQSMKMAREVRRRR---PFTSSRDVIGCVEAAGDMLPEEVWSTQ 296

Query: 204 NNRIHP--ATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKF 261
           ++R     + + F +LR  +NNE+ EL + L +A   L+  G L+V S    E+RL++  
Sbjct: 297 SSRRKTPMSWKFFTSLRCILNNEMYELREALENALLLLRDDGRLVVFSRLVWEERLIQST 356

Query: 262 FASRSGKVMAVRHMIP 277
             S    ++     +P
Sbjct: 357 VESHPHALLCYTEDVP 372


>gi|159470611|ref|XP_001693450.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158282953|gb|EDP08704.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 74

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/76 (44%), Positives = 45/76 (59%), Gaps = 8/76 (10%)

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI--TKKVVVPT 296
           L  GG L V+SFHSLEDRLVK  FA  +G+        P + H      +   +K V+P+
Sbjct: 1   LAPGGRLAVISFHSLEDRLVKHAFARAAGR------PTPEDEHRTRVAVLVGNQKPVLPS 54

Query: 297 QEDVAFNRRSRSAKLR 312
           +E+ A N R+RSAKLR
Sbjct: 55  EEETARNPRARSAKLR 70


>gi|213026454|ref|ZP_03340901.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 58

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/58 (46%), Positives = 41/58 (70%), Gaps = 1/58 (1%)

Query: 171 RIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEEL 228
           RIAHAIV+R +  P   T++L+ ++       K+   HPATR+FQA+RI+VN+E+EE+
Sbjct: 1   RIAHAIVERNREQPMTRTKELAEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEI 57


>gi|295099855|emb|CBK88944.1| Predicted S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [Eubacterium cylindroides
           T2-87]
          Length = 107

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 51/93 (54%)

Query: 221 VNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA 280
           VN E+ +L   L+   K LK  G + V++FHSLEDR+VKK F   +      + +     
Sbjct: 3   VNQELPQLEVVLKEGLKRLKPHGRMCVITFHSLEDRIVKKIFKEVAVPKKVDKRLPSLGI 62

Query: 281 HPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
               +Q + +K V+ +++++  N R+ SAKLR 
Sbjct: 63  ENLEYQLVNRKPVLASKQELDTNYRAHSAKLRG 95


>gi|169841872|ref|ZP_02874981.1| Methyltransferase [candidate division TM7 single-cell isolate TM7a]
          Length = 78

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/70 (44%), Positives = 45/70 (64%), Gaps = 1/70 (1%)

Query: 104 VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGI 162
           VD ++ D+GVSS Q+D   RGFS++    LDMRM  S  ISA +VVN  + K++  I+  
Sbjct: 9   VDRILMDIGVSSNQLDNAKRGFSYRFEARLDMRMDSSLKISAYEVVNDFSEKEIADIIYK 68

Query: 163 LGEEKQASRI 172
            GEE ++ +I
Sbjct: 69  YGEEPKSRKI 78


>gi|261885262|ref|ZP_06009301.1| S-adenosyl-methyltransferase MraW [Campylobacter fetus subsp.
           venerealis str. Azul-94]
          Length = 111

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/103 (32%), Positives = 58/103 (56%), Gaps = 4/103 (3%)

Query: 213 SFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAV 272
           +FQA+RI VN E++EL   L   + +     +L ++SFHSLED++ K  F       +  
Sbjct: 2   AFQAIRIEVNKELDELNNLLNLIKSSKINNAILDIISFHSLEDKIAKSTFKEWEKSCICD 61

Query: 273 RHMIP---SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
             ++     N H ++ + +TKK + P+++++  N RS  AK+R
Sbjct: 62  NFVMKCECGNNH-SIGKILTKKPITPSEDEIKQNPRSSCAKMR 103


>gi|167951237|ref|ZP_02538311.1| S-adenosyl-methyltransferase MraW [Endoriftia persephone
          'Hot96_1+Hot96_2']
          Length = 119

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 4/82 (4%)

Query: 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MG--SNVIALDRDPFAVSC 73
          I  H PVLLE+ +  LN     + +D TFG GG+SR   K +G    +I +D+DP A+  
Sbjct: 4  ITTHRPVLLEEAVTALNITAEGIYIDGTFGRGGHSRRILKVLGERGRLIGIDKDPQAIVH 63

Query: 74 GQETMRDYKEQFSLFQATFSQL 95
          G+E +     +F++ Q +F+ +
Sbjct: 64 GREQLGG-DARFTIVQQSFAMI 84


>gi|56808162|ref|ZP_00365944.1| COG0275: Predicted S-adenosylmethionine-dependent methyltransferase
           involved in cell envelope biogenesis [Streptococcus
           pyogenes M49 591]
          Length = 95

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 2/88 (2%)

Query: 230 QGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSI 288
           + ++ A + L   G + V++FHSLEDRL K+ F   S   V     +IP +  P  F+ +
Sbjct: 6   EYIQDAMELLALDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPLIPEDMKPK-FELV 64

Query: 289 TKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           ++K ++P+  ++  N+R+ SAKLR   +
Sbjct: 65  SRKPILPSHSELTANKRAHSAKLRVAKK 92


>gi|225389940|ref|ZP_03759664.1| hypothetical protein CLOSTASPAR_03690 [Clostridium asparagiforme
           DSM 15981]
 gi|225043994|gb|EEG54240.1| hypothetical protein CLOSTASPAR_03690 [Clostridium asparagiforme
           DSM 15981]
          Length = 111

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 55/104 (52%), Gaps = 5/104 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MG-SNVIALDRDPFAVSCGQET 77
           H  VLL + +  LN  PG   +D T G GG++    K +G   +I +D+D  A+    + 
Sbjct: 8   HTSVLLYETVGSLNIIPGGCYVDGTLGGGGHALEVLKRLGHGRLIGIDQDEDAIRAAGQR 67

Query: 78  MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQI 118
           ++ + ++ ++ +  +  ++  +     + VDG+  DLGVSS Q+
Sbjct: 68  LKAFADKVTIVRDNYRNIRSVLEQLSVEKVDGIYLDLGVSSYQL 111


>gi|118594403|ref|ZP_01551750.1| S-adenosyl-methyltransferase MraW [Methylophilales bacterium
           HTCC2181]
 gi|118440181|gb|EAV46808.1| S-adenosyl-methyltransferase MraW [Methylophilales bacterium
           HTCC2181]
          Length = 98

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 6/86 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQE 76
           H+PVLL + I  LN  P    LD TFG GG+S+   K       ++A+D+D  AV+ G++
Sbjct: 8   HIPVLLNESIDGLNINPAGTYLDCTFGRGGHSKEILKRLNQNGRLVAIDQDLAAVAEGKK 67

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK 102
                 ++F ++   FS + + V  K
Sbjct: 68  I---NDKRFDIYHGKFSSMDEIVKKK 90


>gi|312867849|ref|ZP_07728054.1| S-adenosyl-methyltransferase MraW [Streptococcus parasanguinis
           F0405]
 gi|311096604|gb|EFQ54843.1| S-adenosyl-methyltransferase MraW [Streptococcus parasanguinis
           F0405]
          Length = 84

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 2/79 (2%)

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297
           L   G + V++FHSLEDRL K+ F   S  +V      IP +  P + + + +K ++P+ 
Sbjct: 4   LAIDGRISVITFHSLEDRLTKQLFKEVSTVEVPKGLPFIPDDLKPKM-ELVNRKPILPSD 62

Query: 298 EDVAFNRRSRSAKLRAGMR 316
           E++  N RS SAKLR   +
Sbjct: 63  EELEDNNRSHSAKLRVARK 81


>gi|153864731|ref|ZP_01997531.1| Bacterial methyltransferase [Beggiatoa sp. SS]
 gi|152145773|gb|EDN72468.1| Bacterial methyltransferase [Beggiatoa sp. SS]
          Length = 95

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 3/60 (5%)

Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQ 75
          +H PVLL +VI  LN       +D TFG GG++R+     +    V+ALD DP AV  GQ
Sbjct: 11 EHQPVLLSEVIHALNIHADGTYIDCTFGRGGHTRAILNHLEASGRVLALDTDPQAVQAGQ 70


>gi|226328338|ref|ZP_03803856.1| hypothetical protein PROPEN_02232 [Proteus penneri ATCC 35198]
 gi|225203071|gb|EEG85425.1| hypothetical protein PROPEN_02232 [Proteus penneri ATCC 35198]
          Length = 89

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 6/80 (7%)

Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQE 76
          H  VLL++ +  LN  P  + +D TFG GG+SR    ++G    +IA+DRDP A++   E
Sbjct: 8  HTSVLLDEAVNGLNIKPSGIYIDGTFGRGGHSRLILSQLGEQGRLIAIDRDPQAIAVANE 67

Query: 77 TMRDYKEQFSLFQATFSQLQ 96
                 +FS+    F  L 
Sbjct: 68 I---DDARFSIVHGPFQILN 84


>gi|33866827|ref|NP_898386.1| hypothetical protein SYNW2297 [Synechococcus sp. WH 8102]
 gi|33639428|emb|CAE08812.1| conserved hypothetical protein [Synechococcus sp. WH 8102]
          Length = 83

 Score = 47.4 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/92 (38%), Positives = 48/92 (52%), Gaps = 17/92 (18%)

Query: 221 VNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA 280
           +N+E+  L + L+ A   L+ GGL+ ++SFHSLEDR VK  F                  
Sbjct: 1   MNDELGVLDRLLQQAPDWLEPGGLVGIISFHSLEDRRVKTAFLRDER------------- 47

Query: 281 HPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
                + IT+K VV T+E+   N RSRSAK R
Sbjct: 48  ----LERITRKPVVATEEEEEANPRSRSAKWR 75


>gi|225159221|ref|ZP_03725523.1| S-adenosylmethionine-dependent methyltransferase involved in cell
           envelope biogenesis-like protein [Opitutaceae bacterium
           TAV2]
 gi|224802168|gb|EEG20438.1| S-adenosylmethionine-dependent methyltransferase involved in cell
           envelope biogenesis-like protein [Opitutaceae bacterium
           TAV2]
          Length = 125

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 3/81 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H+ VLL+  + LL P  G   LD TFG GG++R+      +  V+ALDRDP A+      
Sbjct: 34  HISVLLQPTLELLAPRAGGRYLDCTFGGGGHTRALLNAAPDTRVVALDRDPAALPRAAAL 93

Query: 78  MRDY-KEQFSLFQATFSQLQD 97
             +Y  ++F L    F +L +
Sbjct: 94  AAEYGSDRFQLIDRDFGRLAE 114


>gi|299143951|ref|ZP_07037031.1| S-adenosyl-methyltransferase MraW [Peptoniphilus sp. oral taxon 386
           str. F0131]
 gi|298518436|gb|EFI42175.1| S-adenosyl-methyltransferase MraW [Peptoniphilus sp. oral taxon 386
           str. F0131]
          Length = 83

 Score = 45.4 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 11/84 (13%)

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA------HPAVFQSITKKV 292
           L  GG + V+SFHSLEDR+VK+ F     K   +  + P  A           + IT+K 
Sbjct: 4   LNPGGRIAVISFHSLEDRIVKETF-----KYYYLDCICPEKAPVCNCGKKREIEIITRKP 58

Query: 293 VVPTQEDVAFNRRSRSAKLRAGMR 316
           +V +++++  N R+ SAKLR   +
Sbjct: 59  IVASEKELIENNRAHSAKLRVAEK 82


>gi|119509472|ref|ZP_01628620.1| Ribosomal L11 methyltransferase [Nodularia spumigena CCY9414]
 gi|119465878|gb|EAW46767.1| Ribosomal L11 methyltransferase [Nodularia spumigena CCY9414]
          Length = 315

 Score = 43.5 bits (101), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 62/128 (48%), Gaps = 28/128 (21%)

Query: 17  IGDHVPVLLEKVIAL---LNPA-------------PGKVILDATFGAGGYSRSFCKMGSN 60
           I D + + L+K +A    L+PA             P   +LD   G+G  S +  K+G+N
Sbjct: 120 IADKITLKLQKTLAFGSGLHPATIVSLRLVERYITPQMQVLDFGSGSGILSVAMAKLGAN 179

Query: 61  VIALDRDPFAVSCGQET--MRDYKEQFSLFQATF---SQLQDYVPDKGVDGV-------V 108
           V+ALD D  AV+  QET  + + ++Q  + Q +    S+L  ++    V+ V        
Sbjct: 180 VLALDNDSVAVAATQETVSLNNVEQQVQVIQGSLGCGSELGHWMGVNTVNDVSKVEAKDT 239

Query: 109 FDLGVSSM 116
           FDL V+++
Sbjct: 240 FDLIVANI 247


>gi|198284531|ref|YP_002220852.1| TrmA family RNA methyltransferase [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218667266|ref|YP_002427198.1| 23S rRNA (uracil-5-)-methyltransferase [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|254766918|sp|B7J921|RUMA_ACIF2 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|254766919|sp|B5EPA4|RUMA_ACIF5 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|198249052|gb|ACH84645.1| RNA methyltransferase, TrmA family [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218519479|gb|ACK80065.1| 23S rRNA (uracil-5-)-methyltransferase [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 440

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 23/92 (25%), Positives = 49/92 (53%), Gaps = 4/92 (4%)

Query: 23  VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY- 81
           V++ + +ALL P PG+ ILD   G G ++    ++G+ V+ ++ D   V+   E      
Sbjct: 281 VMVRRAMALLQPQPGEHILDLFCGLGNFTLPIARLGAQVLGIEGDARLVALAAENAAANG 340

Query: 82  ---KEQFSLFQATFSQLQDYVPDKGVDGVVFD 110
              K ++++   T ++++D+ P   +D ++ D
Sbjct: 341 LADKARYAVADLTQARMEDFAPAGAIDKMLID 372


>gi|229091804|ref|ZP_04223002.1| Methylase [Bacillus cereus Rock3-42]
 gi|228691532|gb|EEL45287.1| Methylase [Bacillus cereus Rock3-42]
          Length = 238

 Score = 43.5 bits (101), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 16/99 (16%)

Query: 22  PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81
           P ++E +   L    GK ILDA   AG Y+  F + G+NV A+D     V   +E+M + 
Sbjct: 36  PAMMEMIPKNLE---GKNILDAGCAAGWYTSQFIERGANVTAIDVSSEMVKAAKESMDN- 91

Query: 82  KEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQI 118
                  +ATF    LQD +P    +   FD+ VSS+ +
Sbjct: 92  -------KATFLCHDLQDVLP---FEDNTFDIIVSSLTL 120


>gi|196043260|ref|ZP_03110498.1| ubiquinone/menaquinone biosynthesis methyltransferase [Bacillus
           cereus 03BB108]
 gi|225864774|ref|YP_002750152.1| ubiquinone/menaquinone biosynthesis methyltransferase [Bacillus
           cereus 03BB102]
 gi|196025569|gb|EDX64238.1| ubiquinone/menaquinone biosynthesis methyltransferase [Bacillus
           cereus 03BB108]
 gi|225788114|gb|ACO28331.1| ubiquinone/menaquinone biosynthesis methyltransferase [Bacillus
           cereus 03BB102]
          Length = 236

 Score = 43.5 bits (101), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 16/99 (16%)

Query: 22  PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81
           P ++E +   L    GK ILDA   AG Y+  F + G+NV A+D     V   +E+M + 
Sbjct: 34  PAMMEMIPKNLE---GKNILDAGCAAGWYTSQFIERGANVTAIDVSSEMVKAAKESMDN- 89

Query: 82  KEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQI 118
                  +ATF    LQD +P    +   FD+ VSS+ +
Sbjct: 90  -------KATFLCHDLQDVLP---FEDNTFDIIVSSLTL 118


>gi|118478155|ref|YP_895306.1| ubiquinone/menaquinone biosynthesis methyltransferase [Bacillus
           thuringiensis str. Al Hakam]
 gi|228915398|ref|ZP_04078991.1| Methylase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|229185016|ref|ZP_04312206.1| Methylase [Bacillus cereus BGSC 6E1]
 gi|118417380|gb|ABK85799.1| ubiquinone/menaquinone biosynthesis methyltransferase [Bacillus
           thuringiensis str. Al Hakam]
 gi|228598491|gb|EEK56121.1| Methylase [Bacillus cereus BGSC 6E1]
 gi|228844341|gb|EEM89399.1| Methylase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
          Length = 238

 Score = 43.5 bits (101), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 16/99 (16%)

Query: 22  PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81
           P ++E +   L    GK ILDA   AG Y+  F + G+NV A+D     V   +E+M + 
Sbjct: 36  PAMMEMIPKNLE---GKNILDAGCAAGWYTSQFIERGANVTAIDVSSEMVKAAKESMDN- 91

Query: 82  KEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQI 118
                  +ATF    LQD +P    +   FD+ VSS+ +
Sbjct: 92  -------KATFLCHDLQDVLP---FEDNTFDIIVSSLTL 120


>gi|324326768|gb|ADY22028.1| ubiquinone/menaquinone biosynthesis methyltransferase [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 235

 Score = 43.5 bits (101), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 16/99 (16%)

Query: 22  PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81
           P ++E V   L    GK ILDA   AG Y+  F + G+NV A+D     V   +E+M D 
Sbjct: 33  PAMMEMVPKKLE---GKSILDAGCAAGWYTSQFVERGANVTAIDVSYEMVKAAKESMGD- 88

Query: 82  KEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQI 118
                  +ATF    LQ+ +P    +   FD+ VSS+ +
Sbjct: 89  -------KATFLCHDLQEILP---FEDHTFDVIVSSLTL 117


>gi|217960240|ref|YP_002338800.1| methylase [Bacillus cereus AH187]
 gi|217064854|gb|ACJ79104.1| methylase [Bacillus cereus AH187]
          Length = 235

 Score = 43.1 bits (100), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 16/99 (16%)

Query: 22  PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81
           P ++E V   L    GK ILDA   AG Y+  F + G+NV A+D     V   +E+M D 
Sbjct: 33  PAMMEMVPKKLE---GKSILDAGCAAGWYTSQFVERGANVTAIDVSYEMVKAAKESMGD- 88

Query: 82  KEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQI 118
                  +ATF    LQ+ +P    +   FD+ VSS+ +
Sbjct: 89  -------KATFLCHDLQEVLP---FEDHTFDVIVSSLTL 117


>gi|301054319|ref|YP_003792530.1| ubiquinone/menaquinone biosynthesis methyltransferase [Bacillus
           anthracis CI]
 gi|300376488|gb|ADK05392.1| ubiquinone/menaquinone biosynthesis methyltransferase [Bacillus
           cereus biovar anthracis str. CI]
          Length = 235

 Score = 43.1 bits (100), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 16/99 (16%)

Query: 22  PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81
           P ++E V   L    GK ILDA   AG Y+  F + G+NV A+D     V   +E+M D 
Sbjct: 33  PAMMEMVPKKLE---GKSILDAGCAAGWYTSQFVERGANVTAIDVSYEMVKAAKESMGD- 88

Query: 82  KEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQI 118
                  +ATF    LQ+ +P    +   FD+ VSS+ +
Sbjct: 89  -------KATFLCHDLQEVLP---FEDHTFDVIVSSLTL 117


>gi|228985893|ref|ZP_04146041.1| Methylase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228773822|gb|EEM22240.1| Methylase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 238

 Score = 43.1 bits (100), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 16/99 (16%)

Query: 22  PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81
           P ++E V   L    GK ILDA   AG Y+  F + G+NV A+D     V   +E+M D 
Sbjct: 36  PAMMEMVPKKLE---GKSILDAGCAAGWYTSQFVERGANVTAIDVSYEMVKAAKESMGD- 91

Query: 82  KEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQI 118
                  +ATF    LQ+ +P    +   FD+ VSS+ +
Sbjct: 92  -------KATFLCHDLQEVLP---FEDHTFDVIVSSLTL 120


>gi|229139436|ref|ZP_04268007.1| Methyltransferase type 11 [Bacillus cereus BDRD-ST26]
 gi|228643983|gb|EEL00244.1| Methyltransferase type 11 [Bacillus cereus BDRD-ST26]
          Length = 238

 Score = 43.1 bits (100), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 16/99 (16%)

Query: 22  PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81
           P ++E V   L    GK ILDA   AG Y+  F + G+NV A+D     V   +E+M D 
Sbjct: 36  PAMMEMVPKKLE---GKSILDAGCAAGWYTSQFVERGANVTAIDVSYEMVKAAKESMGD- 91

Query: 82  KEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQI 118
                  +ATF    LQ+ +P    +   FD+ VSS+ +
Sbjct: 92  -------KATFLCHDLQEVLP---FEDHTFDVIVSSLTL 120


>gi|228959032|ref|ZP_04120733.1| Methyltransferase type 11 [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228800693|gb|EEM47609.1| Methyltransferase type 11 [Bacillus thuringiensis serovar pakistani
           str. T13001]
          Length = 235

 Score = 43.1 bits (100), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 16/99 (16%)

Query: 22  PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81
           P ++E +   L    GK ILDA   AG Y+  F K G+NV A+D  P  V   +E + + 
Sbjct: 33  PAMMELIPKELE---GKKILDAGCAAGWYTSQFIKRGANVTAIDVSPEMVKAAKENIGE- 88

Query: 82  KEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQI 118
                  +ATF    LQ+ +P    +   +D+ VSS+ +
Sbjct: 89  -------EATFLCHDLQETLP---FEDNTYDVIVSSLTL 117


>gi|30020924|ref|NP_832555.1| ubiquinone/menaquinone biosynthesis methyltransferase UBIE
           [Bacillus cereus ATCC 14579]
 gi|229128141|ref|ZP_04257123.1| Methyltransferase type 11 [Bacillus cereus BDRD-Cer4]
 gi|29896477|gb|AAP09756.1| Ubiquinone/menaquinone biosynthesis methyltransferase UBIE
           [Bacillus cereus ATCC 14579]
 gi|228655416|gb|EEL11272.1| Methyltransferase type 11 [Bacillus cereus BDRD-Cer4]
          Length = 235

 Score = 43.1 bits (100), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 16/99 (16%)

Query: 22  PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81
           P ++E +   L    GK ILDA   AG Y+  F K G+NV A+D  P  V   +E + + 
Sbjct: 33  PAMMELIPKELE---GKKILDAGCAAGWYTSQFIKRGANVTAIDVSPEMVKAAKENIGE- 88

Query: 82  KEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQI 118
                  +ATF    LQ+ +P K      +D+ VSS+ +
Sbjct: 89  -------EATFLCHDLQETLPFK---DNTYDVIVSSLTL 117


>gi|229046498|ref|ZP_04192153.1| Methyltransferase type 11 [Bacillus cereus AH676]
 gi|229145375|ref|ZP_04273764.1| Methyltransferase type 11 [Bacillus cereus BDRD-ST24]
 gi|228638214|gb|EEK94655.1| Methyltransferase type 11 [Bacillus cereus BDRD-ST24]
 gi|228724860|gb|EEL76162.1| Methyltransferase type 11 [Bacillus cereus AH676]
          Length = 235

 Score = 43.1 bits (100), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 16/99 (16%)

Query: 22  PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81
           P ++E +   L    GK ILDA   AG Y+  F K G+NV A+D  P  V   +E + + 
Sbjct: 33  PAMMELIPKELE---GKKILDAGCAAGWYTSQFIKRGANVTAIDVSPEMVKAAKENIGE- 88

Query: 82  KEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQI 118
                  +ATF    LQ+ +P K      +D+ VSS+ +
Sbjct: 89  -------EATFLCHDLQETLPFK---DNTYDVIVSSLTL 117


>gi|229110250|ref|ZP_04239824.1| Methyltransferase type 11 [Bacillus cereus Rock1-15]
 gi|228673236|gb|EEL28506.1| Methyltransferase type 11 [Bacillus cereus Rock1-15]
          Length = 235

 Score = 43.1 bits (100), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 16/99 (16%)

Query: 22  PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81
           P ++E +   L    GK ILDA   AG Y+  F K G+NV A+D  P  V   +E + + 
Sbjct: 33  PAMMELIPKELE---GKKILDAGCAAGWYTSQFIKRGANVTAIDVSPEMVKAAKENIGE- 88

Query: 82  KEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQI 118
                  +ATF    LQ+ +P K      +D+ VSS+ +
Sbjct: 89  -------EATFLCHDLQETLPFK---DNTYDVIVSSLTL 117


>gi|239611583|gb|EEQ88570.1| methyltransferase [Ajellomyces dermatitidis ER-3]
          Length = 279

 Score = 42.7 bits (99), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 55/131 (41%), Gaps = 6/131 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDP 68
            S+  +HT    VP L +KV+  LNP P   +LD   G G ++ SF     +V+ +D   
Sbjct: 15  WSAEAYHTSAAFVPKLTQKVLQYLNPQPTDRVLDIGCGDGKFTGSFIPHVGSVLGIDASA 74

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             +S  +      K +F +    +   +  + ++  D VV +  +  +  D   R     
Sbjct: 75  SMISSAKADYGSPKAEFRVVDCRYLDRELDIVERAWDKVVSNAALHWILRDASTR----- 129

Query: 129 KSGPLDMRMSC 139
             G L+   SC
Sbjct: 130 -VGVLETIYSC 139


>gi|327348403|gb|EGE77260.1| methyltransferase [Ajellomyces dermatitidis ATCC 18188]
          Length = 279

 Score = 42.7 bits (99), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 55/131 (41%), Gaps = 6/131 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDP 68
            S+  +HT    VP L +KV+  LNP P   +LD   G G ++ SF     +V+ +D   
Sbjct: 15  WSAEAYHTSAAFVPKLTQKVLQYLNPQPTDRVLDIGCGDGKFTGSFIPHVGSVLGIDASA 74

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             +S  +      K +F +    +   +  + ++  D VV +  +  +  D   R     
Sbjct: 75  SMISSAKADYGSPKAEFRVVDCRYLDRELDIVERAWDKVVSNAALHWILRDASTR----- 129

Query: 129 KSGPLDMRMSC 139
             G L+   SC
Sbjct: 130 -VGVLETIYSC 139


>gi|154279200|ref|XP_001540413.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150412356|gb|EDN07743.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 259

 Score = 42.7 bits (99), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 27/103 (26%), Positives = 45/103 (43%)

Query: 21  VPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRD 80
           VP L  KV+  LNP P   +LD   G G ++ SF     +V+ +D  P  +S  ++    
Sbjct: 26  VPKLAHKVLQYLNPQPTDRVLDVGCGDGKFTSSFIPHIKSVLGVDASPSMISSAKQHYGV 85

Query: 81  YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDR 123
            K  F +    +  L+  + +   D VV +  +  +  D   R
Sbjct: 86  PKADFRVVDCRYLDLEQDILNGAWDKVVSNAALHWILKDASTR 128


>gi|74026300|ref|XP_829716.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|70835102|gb|EAN80604.1| RNA-binding protein, putative [Trypanosoma brucei]
          Length = 457

 Score = 42.7 bits (99), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 13/114 (11%)

Query: 92  FSQLQDYVPDKGVDGVVFDLGVSSMQ-------------IDCGDRGFSFQKSGPLDMRMS 138
           FS  Q ++PD  VDG+ + L V  ++             I   DR  SF  +  L M   
Sbjct: 337 FSHHQSFIPDVVVDGLPYWLTVDQLRACFSEYGTVVDVRISIDDRSGSFTGAALLGMSSV 396

Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
              I+AS+ +N A +K  T + G+L        + H +V RR         DLS
Sbjct: 397 EEAIAASEGLNGATLKGHTLVSGVLDARLNIVSLRHGMVVRRADEMLPEDYDLS 450


>gi|261335754|emb|CBH18748.1| RBP37 [Trypanosoma brucei gambiense DAL972]
          Length = 458

 Score = 42.7 bits (99), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 13/114 (11%)

Query: 92  FSQLQDYVPDKGVDGVVFDLGVSSMQ-------------IDCGDRGFSFQKSGPLDMRMS 138
           FS  Q ++PD  VDG+ + L V  ++             I   DR  SF  +  L M   
Sbjct: 338 FSHHQSFIPDVVVDGLPYWLTVDQLRACFSEYGTVVDVRISIDDRSGSFTGAALLGMSSV 397

Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
              I+AS+ +N A +K  T + G+L        + H +V RR         DLS
Sbjct: 398 EEAIAASEGLNGATLKGHTLVSGVLDARLNIVSLRHGMVVRRADEMLPEDYDLS 451


>gi|229156377|ref|ZP_04284472.1| Methylase [Bacillus cereus ATCC 4342]
 gi|228627100|gb|EEK83832.1| Methylase [Bacillus cereus ATCC 4342]
          Length = 238

 Score = 42.7 bits (99), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 16/99 (16%)

Query: 22  PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81
           P ++E V   L    GK ILDA   AG Y+  F + G+NV A+D     +   +E+M D 
Sbjct: 36  PAMMEMVPKKLE---GKSILDAGCAAGWYTSQFVERGANVTAIDVSYEMIKAAKESMGD- 91

Query: 82  KEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQI 118
                  +ATF    LQ+ +P    +   FD+ VSS+ +
Sbjct: 92  -------KATFLCHDLQEVLP---FEDHTFDVIVSSLTL 120


>gi|300709794|ref|YP_003735608.1| hypothetical protein HacjB3_02115 [Halalkalicoccus jeotgali B3]
 gi|299123477|gb|ADJ13816.1| hypothetical protein HacjB3_02115 [Halalkalicoccus jeotgali B3]
          Length = 318

 Score = 42.4 bits (98), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 2/89 (2%)

Query: 22  PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81
           P+L   +  +    PG  ILD   G GG        G+ VI  D         +E +  Y
Sbjct: 162 PLLARAIANIAGAGPGATILDPMCGTGGVLVEAGLAGARVIGADAQWKMTHGARENLAHY 221

Query: 82  KEQFSLFQATFSQLQDYVPDKGVDGVVFD 110
             +F LF+   +++   + D  +DGVVFD
Sbjct: 222 DVEFDLFRGDATRIP--LRDGTIDGVVFD 248


>gi|261204928|ref|XP_002627201.1| methyltransferase [Ajellomyces dermatitidis SLH14081]
 gi|239592260|gb|EEQ74841.1| methyltransferase [Ajellomyces dermatitidis SLH14081]
          Length = 279

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 54/131 (41%), Gaps = 6/131 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDP 68
            S   +HT    VP L +KV+  LNP P   +LD   G G ++ SF     +V+ +D   
Sbjct: 15  WSEEAYHTSAAFVPKLTQKVLQYLNPQPTDRVLDIGCGDGKFTGSFIPHVGSVLGIDASA 74

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             +S  +      K +F +    +   +  + ++  D VV +  +  +  D   R     
Sbjct: 75  SMISSAKADYGSPKAEFRVVDCRYLDRELDIVERAWDKVVSNAALHWILRDASTR----- 129

Query: 129 KSGPLDMRMSC 139
             G L+   SC
Sbjct: 130 -VGVLETIYSC 139


>gi|228908546|ref|ZP_04072386.1| Methyltransferase type 11 [Bacillus thuringiensis IBL 200]
 gi|228851099|gb|EEM95913.1| Methyltransferase type 11 [Bacillus thuringiensis IBL 200]
          Length = 235

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 16/99 (16%)

Query: 22  PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81
           P ++E +   L    GK ILDA   AG Y+  F   G+NV A+D  P  V   +E++ D 
Sbjct: 33  PAMMELIPKELE---GKKILDAGCAAGWYTSQFIGRGANVTAIDVSPEMVKAAKESIGD- 88

Query: 82  KEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQI 118
                  +ATF    LQ+ +P    +   +D+ VSS+ +
Sbjct: 89  -------KATFLCHDLQETLP---FEDSTYDVIVSSLTL 117


>gi|42781887|ref|NP_979134.1| methylase [Bacillus cereus ATCC 10987]
 gi|42737811|gb|AAS41742.1| methylase [Bacillus cereus ATCC 10987]
          Length = 238

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 16/99 (16%)

Query: 22  PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81
           P ++E +   L    GK +LDA   AG Y+  F + G+NV A+D     V   +E+M D 
Sbjct: 36  PAMMEMIPKRLE---GKSVLDAGCAAGWYTSQFVESGANVTAIDVSSEMVKAAKESMGD- 91

Query: 82  KEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQI 118
                  +ATF    LQ+ +P    +   FD+ VSS+ +
Sbjct: 92  -------KATFLCHDLQEILP---FEDHTFDVIVSSLTL 120


>gi|296817461|ref|XP_002849067.1| cyclopropane-fatty-acyl-phospholipid synthase [Arthroderma otae CBS
           113480]
 gi|238839520|gb|EEQ29182.1| cyclopropane-fatty-acyl-phospholipid synthase [Arthroderma otae CBS
           113480]
          Length = 277

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 3/84 (3%)

Query: 26  EKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY--KE 83
           EKV   LN  PG  +LDA  G+G  +    K G NV A+D  PF V   ++ ++ Y  ++
Sbjct: 60  EKVYNKLNLKPGARVLDAGAGSGFVAMYMAKKGLNVDAIDLLPFHVEDAKQNVKQYDLED 119

Query: 84  QFSLFQATFSQLQDYVPDKGVDGV 107
           + ++  A +  L  +  D   DGV
Sbjct: 120 KVAVSLADYHNLTQFA-DNSFDGV 142


>gi|206973940|ref|ZP_03234858.1| ubiquinone/menaquinone biosynthesis methyltransferase [Bacillus
           cereus H3081.97]
 gi|206748096|gb|EDZ59485.1| ubiquinone/menaquinone biosynthesis methyltransferase [Bacillus
           cereus H3081.97]
          Length = 235

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 16/99 (16%)

Query: 22  PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81
           P ++E V   L    GK ILDA   AG Y+  F + G+NV A+D     V   +++M D 
Sbjct: 33  PAMMEMVPKKLE---GKSILDAGCAAGWYTSQFVERGANVTAIDVSYEMVKAAKDSMGD- 88

Query: 82  KEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQI 118
                  +ATF    LQ+ +P    +   FD+ VSS+ +
Sbjct: 89  -------KATFLCHDLQEVLP---FEDHTFDIIVSSLTL 117


>gi|209447527|pdb|3EGE|A Chain A, Crystal Structure Of Putative Methyltransferase From
           Antibiotic Biosynthesis Pathway (Yp_324569.1) From
           Anabaena Variabilis Atcc 29413 At 2.40 A Resolution
          Length = 261

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 7/90 (7%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83
           ++  +I LLN   G VI D   G GGYS +    G  V A+  +P  V   Q  +    E
Sbjct: 22  IVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGLFVYAV--EPSIVXRQQAVVHPQVE 79

Query: 84  QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
            F+ +    +     +PDK VDGV+  L +
Sbjct: 80  WFTGYAENLA-----LPDKSVDGVISILAI 104


>gi|222096300|ref|YP_002530357.1| methylase [Bacillus cereus Q1]
 gi|221240358|gb|ACM13068.1| methylase [Bacillus cereus Q1]
          Length = 238

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 16/99 (16%)

Query: 22  PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81
           P ++E V   L    GK ILDA   AG Y+  F + G+NV A+D     V   +++M D 
Sbjct: 36  PAMMEMVPKKLE---GKSILDAGCAAGWYTSQFVERGANVTAIDVSYEMVKAAKDSMGD- 91

Query: 82  KEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQI 118
                  +ATF    LQ+ +P    +   FD+ VSS+ +
Sbjct: 92  -------KATFLCHDLQEVLP---FEDHTFDIIVSSLTL 120


>gi|213409922|ref|XP_002175731.1| hexaprenyldihydroxybenzoate methyltransferase [Schizosaccharomyces
           japonicus yFS275]
 gi|212003778|gb|EEB09438.1| hexaprenyldihydroxybenzoate methyltransferase [Schizosaccharomyces
           japonicus yFS275]
          Length = 268

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 27/47 (57%)

Query: 33  NPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           N  PGK ILD   GAG  S S  ++G++V+ LD  P  +   Q+ M+
Sbjct: 71  NWFPGKRILDVGCGAGILSESLARLGAHVVGLDASPGTIEAAQQHMK 117


>gi|169610059|ref|XP_001798448.1| hypothetical protein SNOG_08123 [Phaeosphaeria nodorum SN15]
 gi|111063279|gb|EAT84399.1| hypothetical protein SNOG_08123 [Phaeosphaeria nodorum SN15]
          Length = 222

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 3/107 (2%)

Query: 3   SKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI 62
           + S +   S++   IG  + +   +   LL   PG  +LDA  G+G  + +  + G NV 
Sbjct: 40  APSVEAYYSSLESRIGYWLVLGNARHCGLLGLKPGDRVLDAGAGSGYVAMTMARHGLNVQ 99

Query: 63  ALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGVDGV 107
           A+D  P  V+  ++ +R Y  +++  +  A +  L  + PD   DG+
Sbjct: 100 AIDITPHHVANAKKNVRGYGLQDRIKVDYANYHNLSQF-PDASFDGI 145


>gi|75910273|ref|YP_324569.1| MerR family transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|75703998|gb|ABA23674.1| putative MerR-family transcriptional regulator [Anabaena variabilis
           ATCC 29413]
          Length = 260

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 7/90 (7%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83
           ++  +I LLN   G VI D   G GGYS +    G  V A+  +P  V   Q  +    E
Sbjct: 21  IVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGLFVYAV--EPSIVMRQQAVVHPQVE 78

Query: 84  QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
            F+ +    +     +PDK VDGV+  L +
Sbjct: 79  WFTGYAENLA-----LPDKSVDGVISILAI 103


>gi|225574953|ref|ZP_03783563.1| hypothetical protein RUMHYD_03032 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037800|gb|EEG48046.1| hypothetical protein RUMHYD_03032 [Blautia hydrogenotrophica DSM
           10507]
          Length = 187

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 5/82 (6%)

Query: 36  PGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMR--DYKEQFSLFQA 90
           PG + +DAT G G  ++  C++   G  V+A D    A+   +E +R     E + L+  
Sbjct: 20  PGDLCIDATMGNGKDTQVLCELTGKGGKVLAFDIQECALQATRERLRRAGVPENYELYCR 79

Query: 91  TFSQLQDYVPDKGVDGVVFDLG 112
           +   + +Y  +  V  +VF+LG
Sbjct: 80  SHVHMDEYAKEGSVSCIVFNLG 101


>gi|229196971|ref|ZP_04323711.1| Methylase [Bacillus cereus m1293]
 gi|228586528|gb|EEK44606.1| Methylase [Bacillus cereus m1293]
          Length = 238

 Score = 41.6 bits (96), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 16/99 (16%)

Query: 22  PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81
           P ++E V   L    GK ILDA   AG Y+  F + G+NV A+D     V   +++M D 
Sbjct: 36  PAMMEMVPKKLE---GKSILDAGCAAGWYTSQFVERGANVTAIDVSYEMVKAAKDSMGD- 91

Query: 82  KEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQI 118
                  +ATF    LQ+ +P    +   FD+ VSS+ +
Sbjct: 92  -------KATFLCHDLQEVLP---FEDHTFDVIVSSLTL 120


>gi|47569063|ref|ZP_00239753.1| ubiquinone/menaquinone biosynthesis methyltransferase UBIE
           [Bacillus cereus G9241]
 gi|47554332|gb|EAL12693.1| ubiquinone/menaquinone biosynthesis methyltransferase UBIE
           [Bacillus cereus G9241]
          Length = 238

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 16/99 (16%)

Query: 22  PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81
           P ++E V   L    GK ILDA   AG Y+  F + G+NV A+D     V   +E+M + 
Sbjct: 36  PAMMEMVPKKLE---GKSILDAGCAAGWYTSQFVERGANVTAIDVSYEMVKAAKESMGE- 91

Query: 82  KEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQI 118
                  +ATF    LQ+ +P    +   FD+ VSS+ +
Sbjct: 92  -------KATFLCHDLQEVLP---FEDHTFDVIVSSLTL 120


>gi|229097318|ref|ZP_04228280.1| Methyltransferase type 11 [Bacillus cereus Rock3-29]
 gi|228686129|gb|EEL40045.1| Methyltransferase type 11 [Bacillus cereus Rock3-29]
          Length = 235

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 13/84 (15%)

Query: 37  GKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATF--SQ 94
           GK ILDA   AG Y+  F   G+NV A+D  P  V   +E+M +        +ATF    
Sbjct: 45  GKRILDAGCAAGWYTSQFVGRGANVTAIDISPEMVKAVKESMGE--------KATFLCHD 96

Query: 95  LQDYVPDKGVDGVVFDLGVSSMQI 118
           LQ+ +P    +   +D+ VSS+ +
Sbjct: 97  LQETLP---FENNTYDIIVSSLTL 117


>gi|116753346|ref|YP_842464.1| protein of unknown function Met10 [Methanosaeta thermophila PT]
 gi|116664797|gb|ABK13824.1| methyltransferase [Methanosaeta thermophila PT]
          Length = 328

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 1/76 (1%)

Query: 36  PGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95
           PG +++D   G G +S    K G+ VIA+D++P A    +E  R  +    + +   S L
Sbjct: 166 PGDLVVDMFAGVGPFSLLMAKRGARVIAIDKNPCAAKLLKENARMNRLDVEIREGDASSL 225

Query: 96  QDYVPDKGVDGVVFDL 111
            + + DK  D VV +L
Sbjct: 226 TEDLADKA-DHVVMNL 240


>gi|229116314|ref|ZP_04245704.1| Methyltransferase type 11 [Bacillus cereus Rock1-3]
 gi|228667146|gb|EEL22598.1| Methyltransferase type 11 [Bacillus cereus Rock1-3]
          Length = 235

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 13/84 (15%)

Query: 37  GKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATF--SQ 94
           GK ILDA   AG Y+  F   G+NV A+D  P  V   +E+M +        +ATF    
Sbjct: 45  GKRILDAGCAAGWYTSQFVGRGANVTAIDISPEMVKAVKESMGE--------KATFLCHD 96

Query: 95  LQDYVPDKGVDGVVFDLGVSSMQI 118
           LQ+ +P    +   +D+ VSS+ +
Sbjct: 97  LQETLP---FENNTYDIIVSSLTL 117


>gi|229103406|ref|ZP_04234088.1| Methyltransferase type 11 [Bacillus cereus Rock3-28]
 gi|228679902|gb|EEL34097.1| Methyltransferase type 11 [Bacillus cereus Rock3-28]
          Length = 235

 Score = 41.2 bits (95), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 13/84 (15%)

Query: 37  GKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATF--SQ 94
           GK ILDA   AG Y+  F   G+NV A+D  P  V   +E+M +        +ATF    
Sbjct: 45  GKRILDAGCAAGWYTSQFVGRGANVTAIDISPEMVKVVKESMGE--------KATFLCHD 96

Query: 95  LQDYVPDKGVDGVVFDLGVSSMQI 118
           LQ+ +P    +   +D+ VSS+ +
Sbjct: 97  LQETLP---FENNTYDIIVSSLTL 117


>gi|328948779|ref|YP_004366116.1| methyltransferase type 11 [Treponema succinifaciens DSM 2489]
 gi|328449103|gb|AEB14819.1| Methyltransferase type 11 [Treponema succinifaciens DSM 2489]
          Length = 141

 Score = 41.2 bits (95), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 30/68 (44%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H  V+  KV  LL+P P   ILD   G G YS    + G++V+A D     +   +    
Sbjct: 50  HREVVRPKVTELLSPNPADYILDIACGNGNYSSYLAQRGASVVAFDYSKKMIELAKRRQS 109

Query: 80  DYKEQFSL 87
            Y +Q   
Sbjct: 110 QYAKQIEF 117


>gi|242764673|ref|XP_002340822.1| RNA methylase family protein, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218724018|gb|EED23435.1| RNA methylase family protein, putative [Talaromyces stipitatus ATCC
           10500]
          Length = 242

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 5/86 (5%)

Query: 29  IALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMRDY--KEQ 84
           I+   P    V++DA  GAGG S +F K G    V A+++DP  ++C +   + Y  + +
Sbjct: 67  ISTSTPKDKVVLIDAFAGAGGNSIAFAKSGRWKRVYAIEKDPAVLACAKHNAKIYGVQSK 126

Query: 85  FSLFQA-TFSQLQDYVPDKGVDGVVF 109
            + F+   F  L+ ++ D G   VVF
Sbjct: 127 ITWFEGDCFEILKTHLKDLGFYSVVF 152


>gi|83416467|gb|ABC18246.1| unknown [Selenomonas ruminantium]
 gi|83416473|gb|ABC18251.1| unknown [Selenomonas ruminantium]
 gi|83416479|gb|ABC18256.1| unknown [Selenomonas ruminantium]
          Length = 184

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 30/68 (44%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H  V+  KV  LL+P P   ILD   G G YS    + G++V+A D     +   +    
Sbjct: 50  HREVVRPKVTELLSPNPADYILDIACGNGNYSSYLAQRGASVVAFDYSKKMIELAKRRQS 109

Query: 80  DYKEQFSL 87
            Y +Q   
Sbjct: 110 QYAKQIEF 117


>gi|290961780|ref|YP_003492962.1| SAM-dependent methyltransferase [Streptomyces scabiei 87.22]
 gi|260651306|emb|CBG74428.1| putative SAM-dependent methyltransferase [Streptomyces scabiei
           87.22]
          Length = 403

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 4/78 (5%)

Query: 29  IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETM--RDYKEQFS 86
           +A L P  G ++ D   G+G ++    + G+ VIA+D DP A  CG+ T+  R +  Q  
Sbjct: 247 LACLGPRVGDLVWDIGSGSGAFATEAARCGAAVIAVDHDPEA--CGRTTLAARRFGVQLQ 304

Query: 87  LFQATFSQLQDYVPDKGV 104
           +       + + +P+  V
Sbjct: 305 VVHGAAPHVLENLPEPDV 322


>gi|255071427|ref|XP_002499387.1| sterol methytransferase [Micromonas sp. RCC299]
 gi|226514650|gb|ACO60646.1| sterol methytransferase [Micromonas sp. RCC299]
          Length = 346

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 78/195 (40%), Gaps = 14/195 (7%)

Query: 32  LNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETMR--DYKEQFSLF 88
           LN  PGK +LD   G GG  R      G++V  L+ + F +S G+E  R     +     
Sbjct: 94  LNVGPGKKVLDVGCGVGGPLREIAAFTGASVTGLNNNAFQISRGEELNRRTGRHDHCDFI 153

Query: 89  QATFSQLQDYVPDKGVDGVVFDLGVSSMQID---CGDRGFSFQKSGPLDMRMSCSGISAS 145
           +A F  +   VPD   D  V+ +  +    D   C    F   K G +            
Sbjct: 154 KADFMNIP--VPDATYD-AVYQIEATCHAPDAVGCYSEIFRVLKPGGVFASYEWCLTDEY 210

Query: 146 DVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNN 205
           D  N+ + K    IL  +G     +R  H ++   + A F+ T++    + KT   S   
Sbjct: 211 DPQNEEHRKIRQEIL--IGNGLPTARHTHEVLDALKKAGFEVTEEQD--LVKTADVSWYE 266

Query: 206 RIHPATRSFQALRIF 220
            I P  R+++  R F
Sbjct: 267 PIDP-DRAWRPWRDF 280


>gi|315656323|ref|ZP_07909214.1| methyltransferase domain protein [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|315493325|gb|EFU82925.1| methyltransferase domain protein [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 255

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 30/68 (44%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H  V+  KV  LL+P P   ILD   G G YS    + G++V+A D     +   +    
Sbjct: 50  HREVVRPKVTELLSPNPADYILDIACGNGNYSSYLAQRGASVVAFDYSKKMIELAKRRQS 109

Query: 80  DYKEQFSL 87
            Y +Q   
Sbjct: 110 QYAKQIEF 117


>gi|269976671|ref|ZP_06183648.1| SAM independent family methyltransferase [Mobiluncus mulieris 28-1]
 gi|269935145|gb|EEZ91702.1| SAM independent family methyltransferase [Mobiluncus mulieris 28-1]
          Length = 247

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 30/68 (44%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H  V+  KV  LL+P P   ILD   G G YS    + G++V+A D     +   +    
Sbjct: 42  HREVVRPKVTELLSPNPADYILDIACGNGNYSSYLAQRGASVVAFDYSKKMIELAKRRQS 101

Query: 80  DYKEQFSL 87
            Y +Q   
Sbjct: 102 QYAKQIEF 109


>gi|237745702|ref|ZP_04576182.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
 gi|229377053|gb|EEO27144.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
          Length = 255

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 30/68 (44%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H  V+  KV  LL+P P   ILD   G G YS    + G++V+A D     +   +    
Sbjct: 50  HREVVRPKVTELLSPNPADYILDIACGNGNYSSYLAQRGASVVAFDYSKKMIELAKRRQS 109

Query: 80  DYKEQFSL 87
            Y +Q   
Sbjct: 110 QYAKQIEF 117


>gi|168259009|gb|ACA23190.1| SAM independent family methyltransferase [Bifidobacterium
           thermophilum]
          Length = 255

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 30/68 (44%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H  V+  KV  LL+P P   ILD   G G YS    + G++V+A D     +   +    
Sbjct: 50  HREVVRPKVTELLSPNPADYILDIACGNGNYSSYLAQRGASVVAFDYSKKMIELAKRRQS 109

Query: 80  DYKEQFSL 87
            Y +Q   
Sbjct: 110 QYAKQIEF 117


>gi|237748134|ref|ZP_04578614.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
 gi|229379496|gb|EEO29587.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
          Length = 250

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 29/51 (56%)

Query: 26 EKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQE 76
          E V+ LL+P PG+ ILD   G G  +    KMG  V+A+D +  AV   ++
Sbjct: 25 EPVLKLLDPKPGERILDMGCGLGVLAEEMVKMGCEVVAIDVNSQAVEATRQ 75


>gi|160944450|ref|ZP_02091678.1| hypothetical protein FAEPRAM212_01960 [Faecalibacterium prausnitzii
           M21/2]
 gi|225019542|ref|ZP_03708734.1| hypothetical protein CLOSTMETH_03495 [Clostridium methylpentosum
           DSM 5476]
 gi|226325675|ref|ZP_03801193.1| hypothetical protein COPCOM_03488 [Coprococcus comes ATCC 27758]
 gi|261366542|ref|ZP_05979425.1| methyltransferase domain protein [Subdoligranulum variabile DSM
           15176]
 gi|283796490|ref|ZP_06345643.1| methyltransferase domain protein [Clostridium sp. M62/1]
 gi|290969249|ref|ZP_06560774.1| methyltransferase domain protein [Megasphaera genomosp. type_1 str.
           28L]
 gi|323141251|ref|ZP_08076150.1| methyltransferase domain protein [Phascolarctobacterium sp. YIT
           12067]
 gi|331004537|ref|ZP_08328006.1| hypothetical protein HMPREF0491_02868 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|82470801|gb|ABB77439.1| unknown [Mitsuokella multacida]
 gi|82523583|emb|CAJ43595.1| hypothetical protein [Roseburia sp. A2-183]
 gi|94016157|emb|CAJ97449.1| hypothetical protein [Butyrivibrio fibrisolvens]
 gi|158444232|gb|EDP21236.1| hypothetical protein FAEPRAM212_01960 [Faecalibacterium prausnitzii
           M21/2]
 gi|224947687|gb|EEG28896.1| hypothetical protein CLOSTMETH_03495 [Clostridium methylpentosum
           DSM 5476]
 gi|225205799|gb|EEG88153.1| hypothetical protein COPCOM_03488 [Coprococcus comes ATCC 27758]
 gi|282571357|gb|EFB76892.1| methyltransferase domain protein [Subdoligranulum variabile DSM
           15176]
 gi|290780755|gb|EFD93358.1| methyltransferase domain protein [Megasphaera genomosp. type_1 str.
           28L]
 gi|291075903|gb|EFE13267.1| methyltransferase domain protein [Clostridium sp. M62/1]
 gi|291530480|emb|CBK96065.1| Methylase involved in ubiquinone/menaquinone biosynthesis
           [Eubacterium siraeum 70/3]
 gi|291557364|emb|CBL34481.1| Methylase involved in ubiquinone/menaquinone biosynthesis
           [Eubacterium siraeum V10Sc8a]
 gi|295090343|emb|CBK76450.1| Methylase involved in ubiquinone/menaquinone biosynthesis
           [Clostridium cf. saccharolyticum K10]
 gi|295100568|emb|CBK98113.1| Methylase involved in ubiquinone/menaquinone biosynthesis
           [Faecalibacterium prausnitzii L2-6]
 gi|295115489|emb|CBL36336.1| Methylase involved in ubiquinone/menaquinone biosynthesis
           [butyrate-producing bacterium SM4/1]
 gi|322414290|gb|EFY05110.1| methyltransferase domain protein [Phascolarctobacterium sp. YIT
           12067]
 gi|330410645|gb|EGG90069.1| hypothetical protein HMPREF0491_02868 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 255

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 30/68 (44%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H  V+  KV  LL+P P   ILD   G G YS    + G++V+A D     +   +    
Sbjct: 50  HREVVRPKVTELLSPNPADYILDIACGNGNYSSYLAQRGASVVAFDYSKKMIELAKRRQS 109

Query: 80  DYKEQFSL 87
            Y +Q   
Sbjct: 110 QYAKQIEF 117


>gi|158520955|ref|YP_001528825.1| putative RNA methylase [Desulfococcus oleovorans Hxd3]
 gi|158509781|gb|ABW66748.1| putative RNA methylase [Desulfococcus oleovorans Hxd3]
          Length = 461

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 14/85 (16%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFA------- 70
           G   P +++ +I ++   PG  +LD   G+G        MG N I +D  PF        
Sbjct: 115 GKFHPQMIKGLINIMGLKPGDTVLDPMMGSGTVLVEASLMGINSIGIDASPFCRFMAQTK 174

Query: 71  -------VSCGQETMRDYKEQFSLF 88
                  +S  Q+T+ +YKE F+ F
Sbjct: 175 IDALTVPLSRAQKTLNNYKEVFNYF 199


>gi|154497882|ref|ZP_02036260.1| hypothetical protein BACCAP_01860 [Bacteroides capillosus ATCC
           29799]
 gi|150272872|gb|EDN00029.1| hypothetical protein BACCAP_01860 [Bacteroides capillosus ATCC
           29799]
          Length = 255

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 30/68 (44%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H  V+  KV  LL+P P   ILD   G G YS    + G++V+A D     +   +    
Sbjct: 50  HREVVRPKVTELLSPNPADYILDIACGNGNYSSYLAQRGASVVAFDYSKKMIELAKRRQS 109

Query: 80  DYKEQFSL 87
            Y +Q   
Sbjct: 110 QYAKQIEF 117


>gi|145627902|ref|ZP_01783703.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae 22.1-21]
 gi|144979677|gb|EDJ89336.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae 22.1-21]
          Length = 82

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 41/84 (48%), Gaps = 10/84 (11%)

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSG-----KVMAVRH-MIPSNAHPAVFQSITKKV 292
           L   G L ++SFHSLEDR+VK F   +S      K + +R   I  N        I  K 
Sbjct: 2   LAPEGRLSIISFHSLEDRMVKHFMKKQSKGEDIPKGLPLREDQIQRNQK----LRIIGKA 57

Query: 293 VVPTQEDVAFNRRSRSAKLRAGMR 316
           + P+  ++  N RSRSA LR   R
Sbjct: 58  IQPSDAEIQANPRSRSAILRVAER 81


>gi|82470773|gb|ABB77424.1| unknown protein [Clostridiaceae bacterium K10]
          Length = 246

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 30/68 (44%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H  V+  KV  LL+P P   ILD   G G YS    + G++V+A D     +   +    
Sbjct: 50  HREVVRPKVTELLSPNPADYILDIACGNGNYSSYLAQRGASVVAFDYSKKMIELAKRRQS 109

Query: 80  DYKEQFSL 87
            Y +Q   
Sbjct: 110 QYAKQIEF 117


>gi|259486894|tpe|CBF85124.1| TPA: conserved hypothetical protein [Aspergillus nidulans FGSC A4]
          Length = 279

 Score = 40.8 bits (94), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 23/88 (26%), Positives = 38/88 (43%)

Query: 21  VPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRD 80
           VP L + ++  L+P P   +LD   G G ++  F    S V+ +D  P  +   ++    
Sbjct: 27  VPKLTQTLLQYLDPQPSDSVLDIGCGDGKFTELFLPYVSKVLGVDSSPAMIEAARKGYGS 86

Query: 81  YKEQFSLFQATFSQLQDYVPDKGVDGVV 108
            K +F +    F +    V D   D VV
Sbjct: 87  EKAEFQVLDCCFLEQNSDVADGTWDKVV 114


>gi|332652414|ref|ZP_08418159.1| methyltransferase domain protein [Ruminococcaceae bacterium D16]
 gi|332517560|gb|EGJ47163.1| methyltransferase domain protein [Ruminococcaceae bacterium D16]
          Length = 243

 Score = 40.4 bits (93), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 30/68 (44%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H  V+  KV  LL+P P   ILD   G G YS    + G++V+A D     +   +    
Sbjct: 50  HREVVRPKVTELLSPNPADYILDIACGNGNYSSYLAQRGASVVAFDYSKKMIELAKRRQS 109

Query: 80  DYKEQFSL 87
            Y +Q   
Sbjct: 110 QYAKQIEF 117


>gi|229030481|ref|ZP_04186519.1| Methyltransferase type 11 [Bacillus cereus AH1271]
 gi|228730825|gb|EEL81767.1| Methyltransferase type 11 [Bacillus cereus AH1271]
          Length = 238

 Score = 40.4 bits (93), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 16/99 (16%)

Query: 22  PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81
           P ++E +   L    GK ILDA   AG Y+  F + G+NV A+D     V   +E+M   
Sbjct: 36  PAMMEMIPKKLE---GKSILDAGCAAGWYTSQFVERGANVTAIDVSSEMVKAAKESMGG- 91

Query: 82  KEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQI 118
                  +ATF    LQ+ +P    +   FD+ VSS+ +
Sbjct: 92  -------KATFLCHDLQEVLP---FEDNTFDIIVSSLTL 120


>gi|307325493|ref|ZP_07604695.1| precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE
           subunit [Streptomyces violaceusniger Tu 4113]
 gi|306888962|gb|EFN19946.1| precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE
           subunit [Streptomyces violaceusniger Tu 4113]
          Length = 417

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 2/95 (2%)

Query: 29  IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLF 88
           +A + P PG ++ D   G+G  +      G+ VI +DRDP A        R +  Q  + 
Sbjct: 263 LARIGPRPGDLVWDIGAGSGAAAVETAGFGAAVITVDRDPDACERTDTLARRFGVQLQVV 322

Query: 89  QATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDR 123
           Q    ++ + +P+   D V    G +S+   C  R
Sbjct: 323 QGVAPEVLEDLPEP--DAVRIGGGGASVVAACAAR 355


>gi|219848992|ref|YP_002463425.1| methyltransferase type 11 [Chloroflexus aggregans DSM 9485]
 gi|219543251|gb|ACL24989.1| Methyltransferase type 11 [Chloroflexus aggregans DSM 9485]
          Length = 241

 Score = 40.4 bits (93), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 8/92 (8%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSL 87
           +++LL    GK +LDA  G G YS      G+ VIA+D +P  V    + +++  +   +
Sbjct: 39  MLSLLPDVRGKRVLDAGCGPGVYSELLLDRGAEVIAIDANPKMVQLAHQRLQNRAQ---V 95

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGVSSMQID 119
            QA   Q   ++P        FDL +S + +D
Sbjct: 96  LQADLGQPLTFLPTAS-----FDLVISPLVLD 122


>gi|330938026|gb|EGH41806.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv.
          pisi str. 1704B]
          Length = 76

 Score = 40.4 bits (93), Expect = 0.40,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 3/59 (5%)

Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR-SFCKMGSN--VIALDRDPFAVSCGQ 75
          H+ VLLE+ +  L        LD TFG GG+SR    ++G +  ++  D+DP A++ GQ
Sbjct: 7  HITVLLEEAVEALAVRADGCYLDGTFGRGGHSRLILSQLGPDGRLLGFDKDPQAIATGQ 65


>gi|206971860|ref|ZP_03232809.1| ubiquinone/menaquinone biosynthesis methyltransferase ubie
           [Bacillus cereus AH1134]
 gi|228953134|ref|ZP_04115193.1| Methyltransferase type 11 [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|229070279|ref|ZP_04203529.1| Methyltransferase type 11 [Bacillus cereus F65185]
 gi|229079990|ref|ZP_04212521.1| Methyltransferase type 11 [Bacillus cereus Rock4-2]
 gi|229151011|ref|ZP_04279222.1| Methyltransferase type 11 [Bacillus cereus m1550]
 gi|229179085|ref|ZP_04306442.1| Methyltransferase type 11 [Bacillus cereus 172560W]
 gi|229190898|ref|ZP_04317889.1| Methyltransferase type 11 [Bacillus cereus ATCC 10876]
 gi|206733245|gb|EDZ50418.1| ubiquinone/menaquinone biosynthesis methyltransferase ubie
           [Bacillus cereus AH1134]
 gi|228592566|gb|EEK50394.1| Methyltransferase type 11 [Bacillus cereus ATCC 10876]
 gi|228604453|gb|EEK61917.1| Methyltransferase type 11 [Bacillus cereus 172560W]
 gi|228632571|gb|EEK89189.1| Methyltransferase type 11 [Bacillus cereus m1550]
 gi|228703369|gb|EEL55824.1| Methyltransferase type 11 [Bacillus cereus Rock4-2]
 gi|228712843|gb|EEL64768.1| Methyltransferase type 11 [Bacillus cereus F65185]
 gi|228806549|gb|EEM53109.1| Methyltransferase type 11 [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
          Length = 235

 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 16/99 (16%)

Query: 22  PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81
           P ++E +   L    GK ILDA   AG Y+  F   G+NV A+D  P  V   +E + + 
Sbjct: 33  PAMMELIPKELE---GKKILDAGCAAGWYTSQFIGRGANVTAIDVSPEMVKAAKENIGE- 88

Query: 82  KEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQI 118
                  +ATF    LQ+ +P    +   +D+ VSS+ +
Sbjct: 89  -------EATFLCHDLQETLP---FEDNTYDVIVSSLTL 117


>gi|78066871|ref|YP_369640.1| hypothetical protein Bcep18194_A5402 [Burkholderia sp. 383]
 gi|77967616|gb|ABB08996.1| hypothetical protein Bcep18194_A5402 [Burkholderia sp. 383]
          Length = 200

 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 17/38 (44%), Positives = 23/38 (60%)

Query: 36 PGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSC 73
          PG  +LD   G G ++R F   G  V+ALDRDP A++ 
Sbjct: 31 PGGAVLDVAAGGGRHARWFASHGHPVVALDRDPTALAA 68


>gi|118595122|ref|ZP_01552469.1| 23S rRNA (uracil-5-)-methyltransferase [Methylophilales bacterium
           HTCC2181]
 gi|118440900|gb|EAV47527.1| 23S rRNA (uracil-5-)-methyltransferase [Methylophilales bacterium
           HTCC2181]
          Length = 441

 Score = 40.4 bits (93), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 25/45 (55%)

Query: 23  VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRD 67
           VL+ +V+  LNP P +VI D   G G ++      GSNV+  + D
Sbjct: 277 VLIRRVMNFLNPKPTEVIFDFFCGLGNFTLPIASYGSNVVGFESD 321


>gi|28898142|ref|NP_797747.1| hypothetical protein VP1368 [Vibrio parahaemolyticus RIMD 2210633]
 gi|153836563|ref|ZP_01989230.1| methyltransferase domain family [Vibrio parahaemolyticus AQ3810]
 gi|260366443|ref|ZP_05778882.1| methyltransferase family protein [Vibrio parahaemolyticus K5030]
 gi|260878489|ref|ZP_05890844.1| methyltransferase family protein [Vibrio parahaemolyticus AN-5034]
 gi|260897070|ref|ZP_05905566.1| methyltransferase family protein [Vibrio parahaemolyticus Peru-466]
 gi|260901866|ref|ZP_05910261.1| methyltransferase family protein [Vibrio parahaemolyticus AQ4037]
 gi|28806356|dbj|BAC59631.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|149750161|gb|EDM60906.1| methyltransferase domain family [Vibrio parahaemolyticus AQ3810]
 gi|308087784|gb|EFO37479.1| methyltransferase family protein [Vibrio parahaemolyticus Peru-466]
 gi|308091071|gb|EFO40766.1| methyltransferase family protein [Vibrio parahaemolyticus AN-5034]
 gi|308108049|gb|EFO45589.1| methyltransferase family protein [Vibrio parahaemolyticus AQ4037]
 gi|308113173|gb|EFO50713.1| methyltransferase family protein [Vibrio parahaemolyticus K5030]
          Length = 215

 Score = 40.4 bits (93), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 8/100 (8%)

Query: 22  PVLLEKVIALLN-PAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRD 80
            +L+++ I L   P  GK +L+   G G + R+F K+G  V  +D  P A+S  +E  RD
Sbjct: 34  AILVQRFIELEGAPTFGK-LLEVGCGEGHHCRAFFKLGFEVTGIDISPTAISWAKEKARD 92

Query: 81  YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDC 120
              Q + + A  ++    +P+      ++D+ +    + C
Sbjct: 93  TGIQGAFYVADLTEKTLEIPE------IYDVVIDGNCLHC 126


>gi|319936229|ref|ZP_08010649.1| SAM independent family methyltransferase [Coprobacillus sp. 29_1]
 gi|319808803|gb|EFW05336.1| SAM independent family methyltransferase [Coprobacillus sp. 29_1]
          Length = 255

 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 30/68 (44%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H  V+  KV  LL+P P   ILD   G G YS    + G++++A D     +   +    
Sbjct: 50  HREVVRPKVTELLSPNPADYILDIACGNGNYSSYLAQRGASIVAFDYSKKMIELAKRRQS 109

Query: 80  DYKEQFSL 87
            Y +Q   
Sbjct: 110 QYAKQIEF 117


>gi|269929255|ref|YP_003321576.1| methyltransferase type 11 [Sphaerobacter thermophilus DSM 20745]
 gi|269788612|gb|ACZ40754.1| Methyltransferase type 11 [Sphaerobacter thermophilus DSM 20745]
          Length = 258

 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 30/53 (56%)

Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRD 80
          +I LL P PG+ ILD   G G  +R+    G++V ++DRDP  ++  +    D
Sbjct: 31 LIDLLAPQPGERILDLGCGTGHLTRAIADHGAHVTSIDRDPAMIAHARANYPD 83


>gi|167757784|ref|ZP_02429911.1| hypothetical protein CLOSCI_00115 [Clostridium scindens ATCC 35704]
 gi|167769822|ref|ZP_02441875.1| hypothetical protein ANACOL_01156 [Anaerotruncus colihominis DSM
           17241]
 gi|317500622|ref|ZP_07958841.1| SAM independent family methyltransferase [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|323487600|ref|ZP_08092890.1| SAM independent family methyltransferase [Clostridium symbiosum
           WAL-14163]
 gi|167664666|gb|EDS08796.1| hypothetical protein CLOSCI_00115 [Clostridium scindens ATCC 35704]
 gi|167668183|gb|EDS12313.1| hypothetical protein ANACOL_01156 [Anaerotruncus colihominis DSM
           17241]
 gi|316897940|gb|EFV19992.1| SAM independent family methyltransferase [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|323399099|gb|EGA91507.1| SAM independent family methyltransferase [Clostridium symbiosum
           WAL-14163]
          Length = 255

 Score = 40.4 bits (93), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 30/68 (44%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H  V+  KV  LL+P P   ILD   G G YS    + G++++A D     +   +    
Sbjct: 50  HREVVRPKVTELLSPNPADYILDIACGNGNYSSYLAQRGASIVAFDYSKKMIELAKRRQS 109

Query: 80  DYKEQFSL 87
            Y +Q   
Sbjct: 110 QYAKQIEF 117


>gi|323693236|ref|ZP_08107454.1| SAM independent family methyltransferase [Clostridium symbiosum
           WAL-14673]
 gi|323502719|gb|EGB18563.1| SAM independent family methyltransferase [Clostridium symbiosum
           WAL-14673]
          Length = 240

 Score = 40.0 bits (92), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 30/68 (44%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H  V+  KV  LL+P P   ILD   G G YS    + G++++A D     +   +    
Sbjct: 35  HREVVRPKVTELLSPNPADYILDIACGNGNYSSYLAQRGASIVAFDYSKKMIELAKRRQS 94

Query: 80  DYKEQFSL 87
            Y +Q   
Sbjct: 95  QYAKQIEF 102


>gi|228921468|ref|ZP_04084791.1| Methyltransferase type 11 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228838241|gb|EEM83559.1| Methyltransferase type 11 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 235

 Score = 40.0 bits (92), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 13/84 (15%)

Query: 37  GKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATF--SQ 94
           GK ILDA   AG Y+  F   G+NV A+D  P  V   +E + +        +ATF    
Sbjct: 45  GKKILDAGCAAGWYTSQFIGRGANVTAIDVSPEMVKAAKENIGE--------EATFLCHD 96

Query: 95  LQDYVPDKGVDGVVFDLGVSSMQI 118
           LQ+ +P    +   +D+ VSS+ +
Sbjct: 97  LQETLP---FEDNTYDVIVSSLTL 117


>gi|218235557|ref|YP_002367517.1| ubiquinone/menaquinone biosynthesis methyltransferase ubie
           [Bacillus cereus B4264]
 gi|218163514|gb|ACK63506.1| ubiquinone/menaquinone biosynthesis methyltransferase ubie
           [Bacillus cereus B4264]
          Length = 235

 Score = 40.0 bits (92), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 13/84 (15%)

Query: 37  GKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATF--SQ 94
           GK ILDA   AG Y+  F   G+NV A+D  P  V   +E + +        +ATF    
Sbjct: 45  GKKILDAGCAAGWYTSQFIGRGANVTAIDVSPEMVKAAKENIGE--------EATFLCHD 96

Query: 95  LQDYVPDKGVDGVVFDLGVSSMQI 118
           LQ+ +P    +   +D+ VSS+ +
Sbjct: 97  LQETLP---FEDNTYDVIVSSLTL 117


>gi|225562401|gb|EEH10680.1| S-adenosylmethionine (SAM)-dependent methyltransferase [Ajellomyces
           capsulatus G186AR]
          Length = 278

 Score = 40.0 bits (92), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 26/103 (25%), Positives = 44/103 (42%)

Query: 21  VPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRD 80
           VP L  KV+  LNP P   +LD   G G ++ SF     +V+ +D  P  +S  ++    
Sbjct: 26  VPKLAHKVLQYLNPQPTDRVLDVGCGDGKFTSSFIPHIKSVLGVDASPSMISSAKQHYGI 85

Query: 81  YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDR 123
            K  F +    +   +  + +   D VV +  +  +  D   R
Sbjct: 86  PKADFRVVDCRYLDREQDILNGAWDKVVSNAALHWILKDASTR 128


>gi|206560530|ref|YP_002231295.1| putative methyltransferase [Burkholderia cenocepacia J2315]
 gi|198036572|emb|CAR52469.1| putative methyltransferase [Burkholderia cenocepacia J2315]
          Length = 200

 Score = 40.0 bits (92), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 5/69 (7%)

Query: 9  MSSAIHHTIGDHV----PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIAL 64
          MS ++    G HV    P       A L PA G  +LD   G G ++R F   G  V+AL
Sbjct: 1  MSESVIAAAGGHVGQAGPSRWVAQWARLVPA-GGAVLDVAAGGGRHARWFASRGHPVVAL 59

Query: 65 DRDPFAVSC 73
          DRDP A++ 
Sbjct: 60 DRDPAALAA 68


>gi|298248160|ref|ZP_06971965.1| Methyltransferase type 11 [Ktedonobacter racemifer DSM 44963]
 gi|297550819|gb|EFH84685.1| Methyltransferase type 11 [Ktedonobacter racemifer DSM 44963]
          Length = 300

 Score = 40.0 bits (92), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 3/77 (3%)

Query: 7  KTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIA 63
           T SSA  H     +  L ++++A L   PG  +LDA  G GG +R        G  V+A
Sbjct: 21 HTESSAFLHLFDRFLAPLDKQIVAWLQLTPGSRVLDAGCGGGGMTRLLAGAVGSGGEVVA 80

Query: 64 LDRDPFAVSCGQETMRD 80
          LD +P  +   +  ++D
Sbjct: 81 LDANPQLIEWNRSHVKD 97


>gi|196041674|ref|ZP_03108965.1| ubiquinone/menaquinone biosynthesis methyltransferase [Bacillus
           cereus NVH0597-99]
 gi|196027443|gb|EDX66059.1| ubiquinone/menaquinone biosynthesis methyltransferase [Bacillus
           cereus NVH0597-99]
          Length = 236

 Score = 40.0 bits (92), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 16/99 (16%)

Query: 22  PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81
           P ++E +   L+   GK ILDA   AG Y+  F + G+NV A+D     V   +E   D 
Sbjct: 34  PAMMEMIPKNLD---GKSILDAGCAAGWYTSQFIERGANVTAIDVSSEMVKAAKERTGD- 89

Query: 82  KEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQI 118
                  +ATF    LQ+ +P    +   FD+ VSS+ +
Sbjct: 90  -------KATFLCHDLQEILP---FEDNTFDVIVSSLTL 118


>gi|238027991|ref|YP_002912222.1| hypothetical protein bglu_1g24400 [Burkholderia glumae BGR1]
 gi|237877185|gb|ACR29518.1| Hypothetical protein bglu_1g24400 [Burkholderia glumae BGR1]
          Length = 186

 Score = 40.0 bits (92), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 18/38 (47%), Positives = 24/38 (63%)

Query: 35 APGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVS 72
          APG  +LD   G G ++R F   G  V+ALDRDP A++
Sbjct: 17 APGGAVLDVAAGQGRHARWFASRGHPVLALDRDPAALA 54


>gi|331084540|ref|ZP_08333640.1| hypothetical protein HMPREF0992_02564 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330401090|gb|EGG80684.1| hypothetical protein HMPREF0992_02564 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 198

 Score = 39.7 bits (91), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 30/68 (44%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H  V+  KV  LL+P P   ILD   G G YS    + G++V+A D     +   +    
Sbjct: 50  HREVVRPKVTELLSPDPSDYILDIACGNGNYSSYLAQRGASVVAFDYSKKMIELAKRRRS 109

Query: 80  DYKEQFSL 87
            Y +Q   
Sbjct: 110 QYAKQIEF 117


>gi|223983685|ref|ZP_03633861.1| hypothetical protein HOLDEFILI_01142 [Holdemania filiformis DSM
           12042]
 gi|225572812|ref|ZP_03781567.1| hypothetical protein RUMHYD_01003 [Blautia hydrogenotrophica DSM
           10507]
 gi|227824269|ref|ZP_03989101.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|229827136|ref|ZP_04453205.1| hypothetical protein GCWU000182_02521 [Abiotrophia defectiva ATCC
           49176]
 gi|291459465|ref|ZP_06598855.1| methyltransferase domain protein [Oribacterium sp. oral taxon 078
           str. F0262]
 gi|223964382|gb|EEF68718.1| hypothetical protein HOLDEFILI_01142 [Holdemania filiformis DSM
           12042]
 gi|225039869|gb|EEG50115.1| hypothetical protein RUMHYD_01003 [Blautia hydrogenotrophica DSM
           10507]
 gi|226904768|gb|EEH90686.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|229788754|gb|EEP24868.1| hypothetical protein GCWU000182_02521 [Abiotrophia defectiva ATCC
           49176]
 gi|291417922|gb|EFE91641.1| methyltransferase domain protein [Oribacterium sp. oral taxon 078
           str. F0262]
          Length = 255

 Score = 39.7 bits (91), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 30/68 (44%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H  V+  KV  LL+P P   ILD   G G YS    + G++V+A D     +   +    
Sbjct: 50  HREVVRPKVTELLSPDPSDYILDIACGNGNYSSYLAQRGASVVAFDYSKKMIELAKRRRS 109

Query: 80  DYKEQFSL 87
            Y +Q   
Sbjct: 110 QYAKQIEF 117


>gi|228939919|ref|ZP_04102496.1| Methyltransferase type 11 [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228972811|ref|ZP_04133409.1| Methyltransferase type 11 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228979393|ref|ZP_04139728.1| Methyltransferase type 11 [Bacillus thuringiensis Bt407]
 gi|228780327|gb|EEM28559.1| Methyltransferase type 11 [Bacillus thuringiensis Bt407]
 gi|228786897|gb|EEM34878.1| Methyltransferase type 11 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228819850|gb|EEM65898.1| Methyltransferase type 11 [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|326940569|gb|AEA16465.1| ubiquinone/menaquinone biosynthesis methyltransferase UBIE
           [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 235

 Score = 39.7 bits (91), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 16/99 (16%)

Query: 22  PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81
           P ++E +   L    GK ILDA   AG Y+  F   G+NV A+D  P  V   +E + + 
Sbjct: 33  PAMMELISKELE---GKKILDAGCAAGWYTSQFIGRGANVTAIDVSPEMVKAAKEYIGE- 88

Query: 82  KEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQI 118
                  +ATF    LQ+ +P    +   +D+ VSS+ +
Sbjct: 89  -------EATFLCHDLQETLP---FEDNTYDVIVSSLTL 117


>gi|218903922|ref|YP_002451756.1| ubiquinone/menaquinone biosynthesis methyltransferase [Bacillus
           cereus AH820]
 gi|218537665|gb|ACK90063.1| ubiquinone/menaquinone biosynthesis methyltransferase [Bacillus
           cereus AH820]
          Length = 236

 Score = 39.7 bits (91), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 16/99 (16%)

Query: 22  PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81
           P ++E +   L+   GK ILDA   AG Y+  F + G+NV A+D     V   +E   D 
Sbjct: 34  PAMMEMIPKNLD---GKSILDAGCAAGWYTSQFIERGANVTAIDVSSEMVKAAKERTGD- 89

Query: 82  KEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQI 118
                  +ATF    LQ+ +P    +   FD+ VSS+ +
Sbjct: 90  -------KATFLCHDLQEILP---FEDNTFDVIVSSLTL 118


>gi|228927849|ref|ZP_04090897.1| Methyltransferase type 11 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228934075|ref|ZP_04096916.1| Methyltransferase type 11 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228946410|ref|ZP_04108731.1| Methyltransferase type 11 [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|229122346|ref|ZP_04251560.1| Methyltransferase type 11 [Bacillus cereus 95/8201]
 gi|228661195|gb|EEL16821.1| Methyltransferase type 11 [Bacillus cereus 95/8201]
 gi|228813273|gb|EEM59573.1| Methyltransferase type 11 [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228825589|gb|EEM71381.1| Methyltransferase type 11 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228831912|gb|EEM77501.1| Methyltransferase type 11 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 238

 Score = 39.7 bits (91), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 16/99 (16%)

Query: 22  PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81
           P ++E +   L+   GK ILDA   AG Y+  F + G+NV A+D     V   +E   D 
Sbjct: 36  PAMMEMIPKNLD---GKSILDAGCAAGWYTSQFIERGANVTAIDVSSEMVKAAKERTGD- 91

Query: 82  KEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQI 118
                  +ATF    LQ+ +P    +   FD+ VSS+ +
Sbjct: 92  -------KATFLCHDLQEILP---FEDNTFDVIVSSLTL 120


>gi|240281250|gb|EER44753.1| s-adenosylmethionine (SAM)-dependent methyltransferase [Ajellomyces
           capsulatus H143]
 gi|325092258|gb|EGC45568.1| s-adenosylmethionine (SAM)-dependent methyltransferase [Ajellomyces
           capsulatus H88]
          Length = 288

 Score = 39.7 bits (91), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 40/91 (43%)

Query: 21  VPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRD 80
           VP L  KV+  LNP P   +LD   G G ++ SF     +V+ +D  P  +S  ++    
Sbjct: 26  VPKLAHKVLQYLNPQPTDRVLDVGCGDGKFTSSFIPHIKSVLGVDASPSMISSAKQHYGI 85

Query: 81  YKEQFSLFQATFSQLQDYVPDKGVDGVVFDL 111
            K  F +    +   +  + +   D V  +L
Sbjct: 86  PKADFRVVDCRYLDREQDILNGAWDKVSLEL 116


>gi|256371699|ref|YP_003109523.1| tRNA methyltransferase complex GCD14 subunit [Acidimicrobium
           ferrooxidans DSM 10331]
 gi|256008283|gb|ACU53850.1| tRNA methyltransferase complex GCD14 subunit [Acidimicrobium
           ferrooxidans DSM 10331]
          Length = 296

 Score = 39.3 bits (90), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 5/86 (5%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDP-FAVSCGQETMR-DYKEQF 85
           ++  L+ APG+ +L+   G+GG +    ++G++V+A++R P FA    +        E+ 
Sbjct: 89  ILGALDVAPGQRVLECGVGSGGLTVWLARLGASVVAVERRPDFARRAEKNVAHLGGSERV 148

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDL 111
           S+      +L D  P    D VV D+
Sbjct: 149 SII---VGELADVAPPGPYDRVVLDM 171


>gi|52142713|ref|YP_084116.1| ubiquinone/menaquinone biosynthesis methyltransferase [Bacillus
           cereus E33L]
 gi|51976182|gb|AAU17732.1| ubiquinone/menaquinone biosynthesis methyltransferase [Bacillus
           cereus E33L]
          Length = 238

 Score = 39.3 bits (90), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 16/99 (16%)

Query: 22  PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81
           P ++E +   L+   GK ILDA   AG Y+  F + G+NV A+D     V   +E   D 
Sbjct: 36  PAMMEIIPKNLD---GKSILDAGCAAGWYTSQFIERGANVTAIDVSSEMVKAAKERTGD- 91

Query: 82  KEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQI 118
                  +ATF    LQ+ +P    +   FD+ VSS+ +
Sbjct: 92  -------KATFLCHDLQEILP---FEDNTFDVIVSSLTL 120


>gi|323347375|gb|EGA81647.1| Met17p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 383

 Score = 39.3 bits (90), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 60/135 (44%), Gaps = 30/135 (22%)

Query: 16  TIGD---HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPF 69
           TIG+   +VP   EK++A+ +     V++D TFGAGGY   FC   K G++++      +
Sbjct: 155 TIGNPKYNVPDF-EKIVAIAHKHGIPVVVDNTFGAGGY---FCQPIKYGADIVTHSATKW 210

Query: 70  -----------AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQI 118
                       V  G+   +DY E+F      FSQ     P +G  G +++    ++  
Sbjct: 211 IGGHGTTIGGIIVDSGKFPWKDYPEKF----PQFSQ-----PAEGYHGTIYNEAYGNLAY 261

Query: 119 DCGDRGFSFQKSGPL 133
               R    +  GPL
Sbjct: 262 IVHVRTELLRDLGPL 276


>gi|190405358|gb|EDV08625.1| O-acetylhomoserine (thiol)-lyase [Saccharomyces cerevisiae RM11-1a]
          Length = 444

 Score = 38.9 bits (89), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 58/132 (43%), Gaps = 24/132 (18%)

Query: 16  TIGD---HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPF--- 69
           TIG+   +VP   EK++A+ +     V++D TFGAGGY     K G++++      +   
Sbjct: 155 TIGNPKYNVPDF-EKIVAIAHKHGIPVVVDNTFGAGGYFCQPIKYGADIVTHSATKWIGG 213

Query: 70  --------AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCG 121
                    V  G+   +DY E+F      FSQ     P +G  G +++    ++     
Sbjct: 214 HGTTIGGIIVDSGKFPWKDYPEKF----PQFSQ-----PAEGYHGTIYNEAYGNLAYIVH 264

Query: 122 DRGFSFQKSGPL 133
            R    +  GPL
Sbjct: 265 VRTELLRDLGPL 276


>gi|6323333|ref|NP_013406.1| Met17p [Saccharomyces cerevisiae S288c]
 gi|127027|sp|P06106|MET17_YEAST RecName: Full=Protein MET17; Includes: RecName:
           Full=O-acetylhomoserine sulfhydrylase; Short=OAH
           sulfhydrylase; AltName: Full=Homocysteine synthase;
           Includes: RecName: Full=O-acetylserine sulfhydrylase;
           Short=OAS sulfhydrylase
 gi|4080|emb|CAA28181.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|596031|gb|AAB67347.1| Met17p: O-acetylhomoserine-O-Acetylserine sulfhydrylase
           [Saccharomyces cerevisiae]
 gi|51830472|gb|AAU09765.1| YLR303W [Saccharomyces cerevisiae]
 gi|151940833|gb|EDN59215.1| O-acetylhomoserine (thiol)-lyase [Saccharomyces cerevisiae YJM789]
 gi|207342855|gb|EDZ70489.1| YLR303Wp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|259148285|emb|CAY81532.1| Met17p [Saccharomyces cerevisiae EC1118]
 gi|285813716|tpg|DAA09612.1| TPA: Met17p [Saccharomyces cerevisiae S288c]
 gi|323332388|gb|EGA73797.1| Met17p [Saccharomyces cerevisiae AWRI796]
 gi|323336355|gb|EGA77623.1| Met17p [Saccharomyces cerevisiae Vin13]
 gi|323353842|gb|EGA85697.1| Met17p [Saccharomyces cerevisiae VL3]
          Length = 444

 Score = 38.9 bits (89), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 58/132 (43%), Gaps = 24/132 (18%)

Query: 16  TIGD---HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPF--- 69
           TIG+   +VP   EK++A+ +     V++D TFGAGGY     K G++++      +   
Sbjct: 155 TIGNPKYNVPDF-EKIVAIAHKHGIPVVVDNTFGAGGYFCQPIKYGADIVTHSATKWIGG 213

Query: 70  --------AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCG 121
                    V  G+   +DY E+F      FSQ     P +G  G +++    ++     
Sbjct: 214 HGTTIGGIIVDSGKFPWKDYPEKF----PQFSQ-----PAEGYHGTIYNEAYGNLAYIVH 264

Query: 122 DRGFSFQKSGPL 133
            R    +  GPL
Sbjct: 265 VRTELLRDLGPL 276


>gi|328472842|gb|EGF43690.1| hypothetical protein VP10329_19200 [Vibrio parahaemolyticus 10329]
          Length = 216

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 7/87 (8%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFS 93
           P  GK +L+   G G + R+F K+G  V  +D  P A+S  +E  RD   Q + + A  +
Sbjct: 47  PTFGK-LLEVGCGEGHHCRAFFKLGFEVTGIDISPTAISWAKEKARDTGIQGAFYVADLT 105

Query: 94  QLQDYVPDKGVDGVVFDLGVSSMQIDC 120
           +    +P+      ++D+ +    + C
Sbjct: 106 EKTLEIPE------IYDVVIDGNCLHC 126


>gi|332654338|ref|ZP_08420082.1| methyltransferase domain protein [Ruminococcaceae bacterium D16]
 gi|332517424|gb|EGJ47029.1| methyltransferase domain protein [Ruminococcaceae bacterium D16]
          Length = 359

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 2/74 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H  V+  KV  LLNP P   ILD   G G YS    +   +V+A D     V   ++  +
Sbjct: 159 HREVVRPKVTELLNPDPTDYILDIACGNGNYSAYLAEKAVSVLAFDYSEKMVELAKKRQK 218

Query: 80  DYKE--QFSLFQAT 91
            Y +  +F +  AT
Sbjct: 219 RYADHIEFCVADAT 232


>gi|323303833|gb|EGA57616.1| Met17p [Saccharomyces cerevisiae FostersB]
 gi|323307951|gb|EGA61208.1| Met17p [Saccharomyces cerevisiae FostersO]
          Length = 444

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 58/132 (43%), Gaps = 24/132 (18%)

Query: 16  TIGD---HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPF--- 69
           TIG+   +VP   EK++A+ +     V++D TFGAGGY     K G++++      +   
Sbjct: 155 TIGNPKYNVPDF-EKIVAIAHKHGIPVVVDNTFGAGGYFCQPIKYGADIVTHSATKWIGG 213

Query: 70  --------AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCG 121
                    V  G+   +DY E+F      FSQ     P +G  G +++    ++     
Sbjct: 214 HGTTIGGIIVDSGKFPWKDYPEKF----PQFSQ-----PAEGYHGTIYNEAYGNLAYIVH 264

Query: 122 DRGFSFQKSGPL 133
            R    +  GPL
Sbjct: 265 VRTELLRDLGPL 276


>gi|237746404|ref|ZP_04576884.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
 gi|229377755|gb|EEO27846.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
          Length = 283

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 31/56 (55%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83
           V+ LL P  G+ ILD   GAG ++    K G  V+ +D +P AV+  +E   D ++
Sbjct: 59  VLELLAPKAGERILDLGCGAGVWAEEMMKRGCEVVGVDINPQAVAAARERGVDARQ 114


>gi|145592777|ref|YP_001157074.1| methyltransferase type 11 [Salinispora tropica CNB-440]
 gi|145302114|gb|ABP52696.1| Methyltransferase type 11 [Salinispora tropica CNB-440]
          Length = 266

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 6/87 (6%)

Query: 29  IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLF 88
           + LL    G+ +LD   G G Y+      G+ VI LD+ P  V   +E +        +F
Sbjct: 67  LRLLGEVAGRTVLDVACGPGLYAEELVARGARVIGLDQSPRMVHLCRERV-----PSGVF 121

Query: 89  QA-TFSQLQDYVPDKGVDGVVFDLGVS 114
                ++   ++PD+ VD V+F L + 
Sbjct: 122 HVHDLAERLHWLPDESVDLVLFALALE 148


>gi|210614221|ref|ZP_03290116.1| hypothetical protein CLONEX_02329 [Clostridium nexile DSM 1787]
 gi|210150798|gb|EEA81806.1| hypothetical protein CLONEX_02329 [Clostridium nexile DSM 1787]
          Length = 311

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 2/74 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H  V+  KV  LLNP P   ILD   G G YS    +   +V+A D     V   ++  +
Sbjct: 111 HREVVRPKVTELLNPDPTDYILDIACGNGNYSAYLAEKAVSVLAFDYSEKMVELAKKRQK 170

Query: 80  DYKE--QFSLFQAT 91
            Y +  +F +  AT
Sbjct: 171 RYADHIEFCVADAT 184


>gi|229173451|ref|ZP_04300995.1| Methylase [Bacillus cereus MM3]
 gi|228610145|gb|EEK67423.1| Methylase [Bacillus cereus MM3]
          Length = 238

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 16/99 (16%)

Query: 22  PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81
           P ++E +   L    GK ILDA   AG Y+  F + G+NV A+D     V   +E+  + 
Sbjct: 36  PAMMEMISKNLE---GKSILDAGCAAGWYTTQFVERGANVTAIDISSEMVKAAKESTGN- 91

Query: 82  KEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQI 118
                  +ATF    LQ+ +P    +   FD+ VSS+ +
Sbjct: 92  -------KATFLCHDLQEVLP---FEDNTFDVIVSSLTL 120


>gi|297155859|gb|ADI05571.1| precorrin-6Y C5,15-methyltransferase [Streptomyces bingchenggensis
           BCW-1]
          Length = 417

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 2/102 (1%)

Query: 22  PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81
           P L    +A L P  G ++ D   G+G  +      G+ VIA+DRD  A        R +
Sbjct: 256 PQLRATQLARLGPRVGDLVWDIGVGSGAAAVETAGFGAAVIAVDRDRDACERAAALARRF 315

Query: 82  KEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDR 123
             Q  +   T  Q+ + +P+   D V    G  ++   C DR
Sbjct: 316 GVQLQVVHGTAPQVLEDLPEP--DVVRVGAGGPAVVAACADR 355


>gi|229060475|ref|ZP_04197838.1| Methyltransferase type 11 [Bacillus cereus AH603]
 gi|228718858|gb|EEL70479.1| Methyltransferase type 11 [Bacillus cereus AH603]
          Length = 239

 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 16/99 (16%)

Query: 22  PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81
           P ++E +   L    GK ILDA   AG Y+  F   G+NV A+D     V   +E+  D 
Sbjct: 36  PAMMEIIPKKLE---GKRILDAGCAAGWYTSQFVGRGANVTAIDVSSEMVKAAKESTGD- 91

Query: 82  KEQFSLFQATF--SQLQDYVPDKGVDGVVFDLGVSSMQI 118
                  +ATF    LQ+ +P    +   FD+ VSS+ +
Sbjct: 92  -------KATFLCHDLQETLP---FEDNAFDMIVSSLTL 120


>gi|251771272|gb|EES51853.1| Methyltransferase type 11 [Leptospirillum ferrodiazotrophum]
          Length = 214

 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 16/36 (44%), Positives = 24/36 (66%)

Query: 32 LNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRD 67
          L P PG+++LDA  G G +SR F   G +V+ LD++
Sbjct: 31 LRPLPGEIVLDAGCGTGWFSRRFNLEGIHVVGLDKN 66


>gi|159108485|ref|XP_001704513.1| Hypothetical protein GL50803_5613 [Giardia lamblia ATCC 50803]
 gi|157432578|gb|EDO76839.1| hypothetical protein GL50803_5613 [Giardia lamblia ATCC 50803]
          Length = 258

 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 64/162 (39%), Gaps = 40/162 (24%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77
            D V  ++  V+ALL   P  VI D T   GG +R   K     +A++RDP         
Sbjct: 45  ADEVARMMRTVLALLGKPPYAVI-DGTACVGGDTRLLAKHFDMTVAIERDP--------- 94

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGVDG----------------VVFDLGVSSMQIDCG 121
                        T++ LQD +   GVD                 ++  +   S+ +D  
Sbjct: 95  ------------ETYALLQDNLTTWGVDAKTISGDTAALIPQFWTLIGAVATFSLYLDPP 142

Query: 122 DRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGIL 163
             G  ++     D++++   ++  DVVN+A    L+  L +L
Sbjct: 143 WGGVDYRSQ--TDIQLTLGSLAVEDVVNRAFEAHLSMKLAVL 182


>gi|296131397|ref|YP_003638647.1| Methyltransferase type 11 [Cellulomonas flavigena DSM 20109]
 gi|296023212|gb|ADG76448.1| Methyltransferase type 11 [Cellulomonas flavigena DSM 20109]
          Length = 457

 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 4/62 (6%)

Query: 22 PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDP----FAVSCGQET 77
          P  LE ++A +  APG+ +LD   G G Y+ +    G +V+ LDR P     A S G  T
Sbjct: 30 PATLEPLLAAIAAAPGRDVLDVGGGTGNYAAALADAGYDVLVLDRSPDMLAVAASKGLRT 89

Query: 78 MR 79
           R
Sbjct: 90 RR 91


>gi|317490258|ref|ZP_07948746.1| dimethyladenosine transferase [Eggerthella sp. 1_3_56FAA]
 gi|325833365|ref|ZP_08165814.1| putative dimethyladenosine transferase [Eggerthella sp. HGA1]
 gi|316910752|gb|EFV32373.1| dimethyladenosine transferase [Eggerthella sp. 1_3_56FAA]
 gi|325485289|gb|EGC87758.1| putative dimethyladenosine transferase [Eggerthella sp. HGA1]
          Length = 347

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 18/66 (27%), Positives = 37/66 (56%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83
           +L+K++AL + AP   +L+   G G  + +  K    V++++RDP   +   ET+  + +
Sbjct: 38  ILQKIVALADLAPDDYVLEVGPGIGTLTIALLKSAGRVLSVERDPDLPAVLVETLAPWSD 97

Query: 84  QFSLFQ 89
           +F+L  
Sbjct: 98  RFALLN 103


>gi|269839204|ref|YP_003323896.1| methyltransferase type 11 [Thermobaculum terrenum ATCC BAA-798]
 gi|269790934|gb|ACZ43074.1| Methyltransferase type 11 [Thermobaculum terrenum ATCC BAA-798]
          Length = 252

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 7/90 (7%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSL 87
           +I LL PAPG+ +LD   G G  +    + G+ V+ +D  P  V+         + ++  
Sbjct: 23  LIELLAPAPGERVLDLGCGTGDLAHRIAQRGAEVVGIDISPEMVAMA-------RSKYPH 75

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGVSSMQ 117
            +   + +QDY  D   D V  +  +  M+
Sbjct: 76  IRFEVADVQDYRSDGSFDAVFSNAALHWMR 105


>gi|315505979|ref|YP_004084866.1| methyltransferase type 11 [Micromonospora sp. L5]
 gi|315412598|gb|ADU10715.1| Methyltransferase type 11 [Micromonospora sp. L5]
          Length = 258

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 13/94 (13%)

Query: 32  LNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91
           L PAPG  +LD   G G  + +  ++  +V A++ DP  ++  + T+ D +      +A 
Sbjct: 36  LEPAPGVRVLDLGAGTGKLTATLAEVSDDVTAVEPDPAMLAELRRTLPDVRALAGSAEAI 95

Query: 92  FSQLQDYVPDKGVDGVV-------FDLGVSSMQI 118
                  +PD  VD VV       FD+ V+  +I
Sbjct: 96  ------PLPDSSVDAVVAGNAMHWFDMAVAGPEI 123


>gi|283853586|ref|ZP_06370823.1| ribosomal L11 methyltransferase [Desulfovibrio sp. FW1012B]
 gi|283571011|gb|EFC19034.1| ribosomal L11 methyltransferase [Desulfovibrio sp. FW1012B]
          Length = 286

 Score = 38.5 bits (88), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 22/44 (50%)

Query: 36  PGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           PG   LD   G+G      CK+G   + LD DP AV C  E +R
Sbjct: 151 PGNRFLDLGTGSGILGIGLCKLGLTGVGLDIDPQAVWCAAENLR 194


>gi|302867621|ref|YP_003836258.1| methyltransferase [Micromonospora aurantiaca ATCC 27029]
 gi|302570480|gb|ADL46682.1| Methyltransferase type 11 [Micromonospora aurantiaca ATCC 27029]
          Length = 258

 Score = 38.5 bits (88), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 13/94 (13%)

Query: 32  LNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91
           L PAPG  +LD   G G  + +  ++  +V A++ DP  ++  + T+ D +      +A 
Sbjct: 36  LEPAPGVRVLDLGAGTGKLTATLAEVSDDVTAVEPDPAMLAELRRTLPDVRALAGSAEAI 95

Query: 92  FSQLQDYVPDKGVDGVV-------FDLGVSSMQI 118
                  +PD  VD VV       FD+ V+  +I
Sbjct: 96  ------PLPDSSVDAVVAGNAMHWFDMAVAGPEI 123


>gi|85058883|ref|YP_454585.1| biotin synthesis protein BioC [Sodalis glossinidius str.
          'morsitans']
 gi|84779403|dbj|BAE74180.1| biotin synthesis protein BioC [Sodalis glossinidius str.
          'morsitans']
          Length = 259

 Score = 38.1 bits (87), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 25/40 (62%)

Query: 26 EKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALD 65
          +++ AL  P  G+ ILDA  G G +SR +   G+ V+ALD
Sbjct: 40 DRLCALTGPVEGRRILDAGCGTGWFSRRWQAQGNQVVALD 79


>gi|289620473|emb|CBI53046.1| unnamed protein product [Sordaria macrospora]
          Length = 466

 Score = 38.1 bits (87), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 55/108 (50%), Gaps = 4/108 (3%)

Query: 92  FSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQA 151
           F+ ++D      +  +++ L  ++ +   GDR F  Q  GP ++ MS  G+  SDV+ + 
Sbjct: 278 FANMRDTKVYTTLARILYSLRTATRRTIWGDRLF-LQFRGPTNILMSSRGVRVSDVLTRD 336

Query: 152 NVKDLTRI-LGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198
           ++ ++     G++G+    SRI  A  K+   A  +  ++L  L+ +T
Sbjct: 337 DINEIADTEAGVVGKALGTSRIEKA--KKEAKALEEKKKELKPLVSET 382


>gi|212529036|ref|XP_002144675.1| RNA methylase family protein, putative [Penicillium marneffei ATCC
           18224]
 gi|210074073|gb|EEA28160.1| RNA methylase family protein, putative [Penicillium marneffei ATCC
           18224]
          Length = 242

 Score = 38.1 bits (87), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 5/76 (6%)

Query: 39  VILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMRDY--KEQFSLFQA-TFS 93
           V++DA  GAGG S +F K G    V A++++P  ++C +   + Y  + + + F+   F 
Sbjct: 77  VLIDAFAGAGGNSIAFAKSGRWKRVYAIEKNPAVLTCAKHNAKIYGVESKITWFEGDCFE 136

Query: 94  QLQDYVPDKGVDGVVF 109
            L+ ++ D G   VVF
Sbjct: 137 ILKTHLKDLGPYSVVF 152


>gi|159035910|ref|YP_001535163.1| methyltransferase type 11 [Salinispora arenicola CNS-205]
 gi|157914745|gb|ABV96172.1| Methyltransferase type 11 [Salinispora arenicola CNS-205]
          Length = 259

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 6/87 (6%)

Query: 29  IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVS-CGQETMRDYKEQFSL 87
           + LL    G+ +LD   G G Y+      G+ VI LD+ P  V  C Q   R    +F +
Sbjct: 60  LRLLGEVAGRTVLDVACGPGLYAEELVGRGARVIGLDQSPRMVQLCRQ---RVPSGEFRV 116

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGVS 114
                +    ++PD  VD V+F LG+ 
Sbjct: 117 HD--LADRLHWLPDDSVDLVLFALGLE 141


>gi|327259278|ref|XP_003214465.1| PREDICTED: tyrosine-protein phosphatase non-receptor type 21-like
           [Anolis carolinensis]
          Length = 1174

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 12/112 (10%)

Query: 187 TTQDLSSLIQKTVYFSKNN------RIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL- 239
           +T DLS    + +Y S +N      R+H + ++FQ   + V + ++E+++ L SA  A  
Sbjct: 565 STPDLS----RHLYISSSNPDLITRRVHHSVQTFQEDSLPVAHSLQEVSEPLTSARHAQL 620

Query: 240 -KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK 290
            K   + I    HS E   +K+   S S   +A+  ++P+ + P VF   TK
Sbjct: 621 QKRNSIEIAGLAHSFEAMRMKERTMSASAADVALTRVVPAGSQPTVFLERTK 672


>gi|317401458|gb|EFV82090.1| hypothetical protein HMPREF0005_00929 [Achromobacter xylosoxidans
           C54]
          Length = 295

 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 4/77 (5%)

Query: 37  GKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ 96
           GK ILDA  G G ++ +F ++G+NV+A+D+       G + +R   E+F  F+     L 
Sbjct: 101 GKSILDAGCGNGRWAYAFSRLGANVMAVDQS----EHGLQNVRRLCEEFPGFRHQAVNLL 156

Query: 97  DYVPDKGVDGVVFDLGV 113
           + +P      +V+  GV
Sbjct: 157 EPLPFDDQFDLVWSYGV 173


>gi|253687896|ref|YP_003017086.1| biotin biosynthesis protein BioC [Pectobacterium carotovorum
          subsp. carotovorum PC1]
 gi|251754474|gb|ACT12550.1| biotin biosynthesis protein BioC [Pectobacterium carotovorum
          subsp. carotovorum PC1]
          Length = 253

 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 26/40 (65%)

Query: 26 EKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALD 65
          E+++ L+ P  G ++LDA  G G +SR + + G  VIALD
Sbjct: 34 ERLLTLMPPHGGLLVLDAGCGTGHFSRHWRQRGKTVIALD 73


>gi|332193122|gb|AEE31243.1| S-adenosyl-L-methionine-dependent methyltransferase
           domain-containing protein [Arabidopsis thaliana]
          Length = 221

 Score = 38.1 bits (87), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 26/45 (57%)

Query: 37  GKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81
           GKV++D   G GG +  F K+ S+VIA+D DP  ++      + Y
Sbjct: 62  GKVVIDCFSGVGGNTIQFAKVCSSVIAIDIDPMKIALAMNNAKVY 106


>gi|238478691|ref|NP_001154386.1| unknown protein [Arabidopsis thaliana]
          Length = 239

 Score = 38.1 bits (87), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 26/45 (57%)

Query: 37  GKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81
           GKV++D   G GG +  F K+ S+VIA+D DP  ++      + Y
Sbjct: 80  GKVVIDCFSGVGGNTIQFAKVCSSVIAIDIDPMKIALAMNNAKVY 124


>gi|295672598|ref|XP_002796845.1| methyltransferase [Paracoccidioides brasiliensis Pb01]
 gi|226282217|gb|EEH37783.1| methyltransferase [Paracoccidioides brasiliensis Pb01]
          Length = 318

 Score = 37.7 bits (86), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 25/118 (21%), Positives = 49/118 (41%)

Query: 11  SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFA 70
           S  ++T    VP L EKV+  L+P P   +LD   G G ++ ++      V+ +D  P  
Sbjct: 31  SEAYNTSAAFVPKLAEKVLQYLDPQPADHVLDVGCGDGKFTGNYISDVGMVLGIDASPSM 90

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
           +   ++     + +F +   T    +  +     D V+ +  +  +  D   R F  +
Sbjct: 91  IGSAKQDYGSSRAEFRVVDCTHLDREPAIVSGTWDKVISNAALHWILRDSSTRMFVLE 148


>gi|313224857|emb|CBY20649.1| unnamed protein product [Oikopleura dioica]
          Length = 1437

 Score = 37.7 bits (86), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 24/48 (50%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 189  QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEEL-AQGLRSA 235
            Q L  L QK V F++ N   PATR F+ L + VN  I+EL A GLR+A
Sbjct: 1387 QVLGELQQKIVQFTQLNPRDPATRGFKMLNMSVNGIIKELGATGLRNA 1434


>gi|67522218|ref|XP_659170.1| hypothetical protein AN1566.2 [Aspergillus nidulans FGSC A4]
 gi|40745117|gb|EAA64273.1| hypothetical protein AN1566.2 [Aspergillus nidulans FGSC A4]
          Length = 121

 Score = 37.7 bits (86), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 22/88 (25%), Positives = 38/88 (43%)

Query: 21  VPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRD 80
           VP L + ++  L+P P   +LD   G G ++  F    S V+ +D  P  +   ++    
Sbjct: 27  VPKLTQTLLQYLDPQPSDSVLDIGCGDGKFTELFLPYVSKVLGVDSSPAMIEAARKGYGS 86

Query: 81  YKEQFSLFQATFSQLQDYVPDKGVDGVV 108
            K +F +    F +    V D   D V+
Sbjct: 87  EKAEFQVLDCCFLEQNSDVADGTWDKVL 114


>gi|186684991|ref|YP_001868187.1| N-6 DNA methylase [Nostoc punctiforme PCC 73102]
 gi|186467443|gb|ACC83244.1| N-6 DNA methylase [Nostoc punctiforme PCC 73102]
          Length = 489

 Score = 37.7 bits (86), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 4/64 (6%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83
           L++ ++AL+ P PG++I D   G GG    F   G   I    DPF  +  Q++ + Y+ 
Sbjct: 152 LIDCMVALIKPQPGELIQDPAAGTGG----FLIAGDRYIRQYHDPFEWTEAQQSFQQYQA 207

Query: 84  QFSL 87
            + +
Sbjct: 208 FYGM 211


>gi|222481034|ref|YP_002567271.1| putative RNA methylase [Halorubrum lacusprofundi ATCC 49239]
 gi|222453936|gb|ACM58201.1| putative RNA methylase [Halorubrum lacusprofundi ATCC 49239]
          Length = 356

 Score = 37.7 bits (86), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 10/88 (11%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY--------K 82
           L   APG+ +LD   G GG       +GS+VIA D     V   +E +R+Y         
Sbjct: 198 LAGAAPGRTLLDPMCGTGGLPLEAGIVGSDVIACDAQTKMVRGTRENLREYLNTALDDSG 257

Query: 83  EQFSLFQATFSQLQDYVPDKGVDGVVFD 110
             + + +   + L   + D  VDGV FD
Sbjct: 258 PDWHVARGDATALP--LRDDAVDGVAFD 283


>gi|313212703|emb|CBY36640.1| unnamed protein product [Oikopleura dioica]
          Length = 266

 Score = 37.7 bits (86), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 24/48 (50%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEEL-AQGLRSA 235
           Q L  L QK V F++ N   PATR F+ L + VN  I+EL A GLR+A
Sbjct: 216 QVLGELQQKIVQFTQLNPRDPATRGFKMLNMSVNGIIKELGATGLRNA 263


>gi|255620758|ref|XP_002540147.1| conserved hypothetical protein [Ricinus communis]
 gi|223498816|gb|EEF22236.1| conserved hypothetical protein [Ricinus communis]
          Length = 217

 Score = 37.7 bits (86), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 4/87 (4%)

Query: 7   KTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDR 66
           +  S++++ +    V  L  + + LLNP PG+ ILD   G G  +      G+ +I +D 
Sbjct: 14  QQWSTSLYESNARFVGDLAARAVELLNPQPGERILDIGCGDGYLTEKIAATGAVMIGVDY 73

Query: 67  DPFAVSCGQETMRDYK----EQFSLFQ 89
            P  V+  +    D +    E+   FQ
Sbjct: 74  SPELVATARARNLDVRVGNAEELDFFQ 100


>gi|118468434|ref|YP_887597.1| methyltransferase [Mycobacterium smegmatis str. MC2 155]
 gi|118169721|gb|ABK70617.1| methyltransferase [Mycobacterium smegmatis str. MC2 155]
          Length = 243

 Score = 37.7 bits (86), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 8/88 (9%)

Query: 29  IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR--DYKEQFS 86
           +AL+    G+ ILDA  G G Y+    K G+++I  D+ P  V   +  +   D++    
Sbjct: 37  LALIGDVAGRTILDAACGPGLYAEELAKRGASLIGFDQSPRMVELARARVPSGDFRVH-- 94

Query: 87  LFQATFSQLQDYVPDKGVDGVVFDLGVS 114
                 +   D++P + VD V+  L + 
Sbjct: 95  ----DLAGPLDWLPSQSVDAVLLALALE 118


>gi|317153229|ref|YP_004121277.1| ribosomal L11 methyltransferase [Desulfovibrio aespoeensis Aspo-2]
 gi|316943480|gb|ADU62531.1| ribosomal L11 methyltransferase [Desulfovibrio aespoeensis Aspo-2]
          Length = 291

 Score = 37.4 bits (85), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 22/41 (53%)

Query: 36  PGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQE 76
           PG+  LD   G+G      CK+G   I LD DP A+ C +E
Sbjct: 147 PGQSFLDLGTGSGILGIGLCKLGLTGIGLDIDPQAIECARE 187


>gi|255020470|ref|ZP_05292535.1| 23S rRNA (uracil-5-) -methyltransferase rumA [Acidithiobacillus
           caldus ATCC 51756]
 gi|254970080|gb|EET27577.1| 23S rRNA (uracil-5-) -methyltransferase rumA [Acidithiobacillus
           caldus ATCC 51756]
          Length = 440

 Score = 37.4 bits (85), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 15/46 (32%), Positives = 28/46 (60%)

Query: 22  PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRD 67
           PVL+ + +ALL P PG+ I+D   G G ++    ++G+  + ++ D
Sbjct: 280 PVLVRRAMALLAPEPGEEIVDLFCGLGNFTLPMARLGARALGVEGD 325


>gi|15835248|ref|NP_297007.1| dimethyladenosine transferase [Chlamydia muridarum Nigg]
 gi|270285420|ref|ZP_06194814.1| dimethyladenosine transferase [Chlamydia muridarum Nigg]
 gi|270289434|ref|ZP_06195736.1| dimethyladenosine transferase [Chlamydia muridarum Weiss]
 gi|301336817|ref|ZP_07225019.1| dimethyladenosine transferase [Chlamydia muridarum MopnTet14]
 gi|27151610|sp|Q9PK40|RSMA_CHLMU RecName: Full=Ribosomal RNA small subunit methyltransferase A;
          AltName: Full=16S rRNA
          (adenine(1518)-N(6)/adenine(1519)-N(6))-
          dimethyltransferase; AltName: Full=16S rRNA
          dimethyladenosine transferase; AltName: Full=16S rRNA
          dimethylase; AltName: Full=S-adenosylmethionine-6-N',
          N'-adenosyl(rRNA) dimethyltransferase
 gi|7190672|gb|AAF39462.1| dimethyladenosine transferase [Chlamydia muridarum Nigg]
          Length = 277

 Score = 37.4 bits (85), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 26/45 (57%)

Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDP 68
          +L K++A  +  PG  +L+   G G  S      G+NVIAL++DP
Sbjct: 34 ILRKILATADVQPGDWVLEIGPGFGALSEVLVSQGANVIALEKDP 78


>gi|303316107|ref|XP_003068058.1| hypothetical protein CPC735_043570 [Coccidioides posadasii C735
          delta SOWgp]
 gi|240107734|gb|EER25913.1| hypothetical protein CPC735_043570 [Coccidioides posadasii C735
          delta SOWgp]
 gi|320032424|gb|EFW14377.1| conserved hypothetical protein [Coccidioides posadasii str.
          Silveira]
          Length = 283

 Score = 37.4 bits (85), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 31/57 (54%)

Query: 9  MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALD 65
           S+  +HT    VP+L +KV+A ++P     +LD   G G ++  +    S+V+ LD
Sbjct: 15 WSAEAYHTSASFVPLLTQKVLAYIDPHSTDQVLDIGCGDGKFTAKYMDRVSHVLGLD 71


>gi|220905791|ref|YP_002481102.1| ribosomal L11 methyltransferase [Cyanothece sp. PCC 7425]
 gi|219862402|gb|ACL42741.1| ribosomal L11 methyltransferase [Cyanothece sp. PCC 7425]
          Length = 336

 Score = 37.4 bits (85), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 23/40 (57%)

Query: 36  PGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQ 75
           PG   LD   G+G  S +  ++G+ V+ALD DP AV   Q
Sbjct: 166 PGMTALDLGCGSGILSVAMARLGATVLALDNDPLAVQATQ 205


>gi|222831815|gb|EEE70292.1| predicted protein [Populus trichocarpa]
          Length = 81

 Score = 37.4 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 3/56 (5%)

Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS-FCKMG--SNVIALDRDPFAVS 72
          H  VLL++ +  L   P    +D TFG GG+SR+   ++G    ++A D+DP A++
Sbjct: 14 HRTVLLDEAVDALVWRPDGAYVDGTFGRGGHSRAVLARLGPAGTLVAFDKDPAAIA 69


>gi|115401608|ref|XP_001216392.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114190333|gb|EAU32033.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 281

 Score = 37.4 bits (85), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 25/106 (23%), Positives = 43/106 (40%)

Query: 3   SKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI 62
           S+S    SS  + T    VP L + V+  L+P P   +LD   G G ++ +F      V+
Sbjct: 2   SQSKDHWSSEAYATSASFVPKLTQTVLRYLDPKPTDRVLDVGCGDGKFTEAFIPAVEYVL 61

Query: 63  ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVV 108
            +D  P  +    +     K  F +    + +    V +   D V+
Sbjct: 62  GVDSSPAMIESANKDYAGPKAAFRVLDCCYLEQDPSVVNGQWDKVI 107


>gi|332288379|ref|YP_004419231.1| 3-demethylubiquinone-9 3-methyltransferase [Gallibacterium anatis
           UMN179]
 gi|330431275|gb|AEC16334.1| 3-demethylubiquinone-9 3-methyltransferase [Gallibacterium anatis
           UMN179]
          Length = 247

 Score = 37.0 bits (84), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 41/100 (41%), Gaps = 20/100 (20%)

Query: 22  PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDP------------- 68
           P+ L  ++   N   GK +LD   G G  S S  K G+NV  +D  P             
Sbjct: 41  PLRLNYILQHSNGLNGKKVLDVGCGGGILSESMAKSGANVTGIDMSPQPLAVAKQHAQDN 100

Query: 69  -FAVSCGQETMRDYKEQFSLFQA------TFSQLQDYVPD 101
              +   Q T+ D+ +Q    QA      T  ++ ++VPD
Sbjct: 101 NLIIDYQQSTIEDFLQQHQQLQAEKFDVITCMEMLEHVPD 140


>gi|119177221|ref|XP_001240414.1| hypothetical protein CIMG_07577 [Coccidioides immitis RS]
          Length = 291

 Score = 37.0 bits (84), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 31/57 (54%)

Query: 9  MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALD 65
           S+  +HT    VP+L +KV+A ++P     +LD   G G ++  +    S+V+ LD
Sbjct: 15 WSAEAYHTSASFVPLLTQKVLAYIDPHSTDQVLDIGCGDGKFTAKYMDRVSHVLGLD 71


>gi|308177784|ref|YP_003917190.1| RNA methyltransferase [Arthrobacter arilaitensis Re117]
 gi|307745247|emb|CBT76219.1| putative RNA methyltransferase [Arthrobacter arilaitensis Re117]
          Length = 440

 Score = 37.0 bits (84), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 3/91 (3%)

Query: 23  VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMR 79
           +L  +VI L  PA G+ I D   GAG +S    K    G  V +++  P   +  ++ +R
Sbjct: 280 LLSSRVIELTEPAAGEQIADLYAGAGLFSVPLAKAVGTGGRVFSIEGAPGTHADAKKNLR 339

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFD 110
           DY +   +       L+    D  +D VV D
Sbjct: 340 DYSQATVIRGRVERVLRQVAHDATLDAVVLD 370


>gi|75859106|ref|XP_868893.1| hypothetical protein AN9511.2 [Aspergillus nidulans FGSC A4]
 gi|40747596|gb|EAA66752.1| hypothetical protein AN9511.2 [Aspergillus nidulans FGSC A4]
          Length = 187

 Score = 37.0 bits (84), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 9/81 (11%)

Query: 29  IALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMRDY--KEQ 84
           +A  +P   K+++D   GAGG + +F + G    V A+++DP  + C Q     Y   ++
Sbjct: 83  VAHASPPERKILVDVFAGAGGNTIAFARSGHWKRVYAIEKDPATLRCAQHNAEVYGVADK 142

Query: 85  FSLFQATF-----SQLQDYVP 100
            + FQ        SQL+D  P
Sbjct: 143 ITWFQGDCFDILKSQLKDLAP 163


>gi|23016143|ref|ZP_00055902.1| COG0863: DNA modification methylase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 358

 Score = 37.0 bits (84), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQE 76
           LL +VI + +  PG V+LD  FG G       K+G N I  +RDP  ++  +E
Sbjct: 195 LLYRVI-MASTKPGDVVLDPFFGTGTTGAVAKKLGRNFIGCERDPDYIAAAKE 246


>gi|295676911|ref|YP_003605435.1| hypothetical protein BC1002_1861 [Burkholderia sp. CCGE1002]
 gi|295436754|gb|ADG15924.1| conserved hypothetical protein [Burkholderia sp. CCGE1002]
          Length = 200

 Score = 36.6 bits (83), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 21/33 (63%)

Query: 35 APGKVILDATFGAGGYSRSFCKMGSNVIALDRD 67
          APG  +LD   GAG ++R F  +G  V A+DRD
Sbjct: 27 APGGAVLDVASGAGRHARFFASLGHPVTAIDRD 59


>gi|292654335|ref|YP_003534232.1| N2-methylguanosine tRNA methyltransferase [Haloferax volcanii DS2]
 gi|291370624|gb|ADE02851.1| N2-methylguanosine tRNA methyltransferase [Haloferax volcanii DS2]
          Length = 321

 Score = 36.6 bits (83), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 2/93 (2%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77
           G   PV     + +    PG  ILD   G GG       +G++V+ +D     V   +E 
Sbjct: 159 GSMAPVDARAFVNMAGAEPGARILDPMCGTGGVLLEAGLVGADVVGVDAQAKMVGGAREN 218

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFD 110
           +R Y     + +   + L   + D  +DG VFD
Sbjct: 219 LRHYVGSGDVVRGDATALP--LRDDSMDGAVFD 249


>gi|21243111|ref|NP_642693.1| 3-demethylubiquinone-9 3-methyltransferase [Xanthomonas axonopodis
           pv. citri str. 306]
 gi|24418725|sp|Q8PK00|UBIG_XANAC RecName: Full=3-demethylubiquinone-9 3-methyltransferase; AltName:
           Full=3,4-dihydroxy-5-hexaprenylbenzoate
           methyltransferase; Short=DHHB methyltransferase
 gi|21108628|gb|AAM37229.1| 3-demethylubiquinone-9 3-methyltransferase [Xanthomonas axonopodis
           pv. citri str. 306]
          Length = 239

 Score = 36.6 bits (83), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 43/96 (44%), Gaps = 17/96 (17%)

Query: 22  PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAV------SCGQ 75
           PV LE V A L PA G  +LD   G G  S S  ++G+ V A+D  P  V      S   
Sbjct: 42  PVRLEYVSARLEPA-GARVLDVGCGGGLLSESMARLGAQVTAIDLAPELVKVARLHSLES 100

Query: 76  ETMRDYK---------EQFSLFQA-TFSQLQDYVPD 101
               DY+         EQ   F A T  ++ ++VPD
Sbjct: 101 GVQVDYRVQSVEDLAAEQAGSFDAVTCMEMLEHVPD 136


>gi|196009009|ref|XP_002114370.1| hypothetical protein TRIADDRAFT_58107 [Trichoplax adhaerens]
 gi|190583389|gb|EDV23460.1| hypothetical protein TRIADDRAFT_58107 [Trichoplax adhaerens]
          Length = 725

 Score = 36.6 bits (83), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 23/44 (52%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82
           +I+DA  G GG    F K   +VIA+D DP  + C +   + Y 
Sbjct: 564 IIIDAFCGVGGNCIQFAKTCDHVIAIDIDPNKIKCARHNAKIYN 607


>gi|17508967|ref|NP_492400.1| hypothetical protein T08G11.4 [Caenorhabditis elegans]
 gi|5824602|emb|CAB02307.2| C. elegans protein T08G11.4a, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 566

 Score = 36.6 bits (83), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 23/40 (57%)

Query: 42  DATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81
           DA  G GG +  F   G++VIA+D DP  + C +E  R Y
Sbjct: 396 DAFTGVGGNAIQFALRGAHVIAIDMDPVRLKCARENARVY 435


>gi|193203170|ref|NP_001122517.1| hypothetical protein T08G11.4 [Caenorhabditis elegans]
 gi|159572236|emb|CAP19342.1| C. elegans protein T08G11.4b, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 495

 Score = 36.6 bits (83), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 23/40 (57%)

Query: 42  DATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81
           DA  G GG +  F   G++VIA+D DP  + C +E  R Y
Sbjct: 325 DAFTGVGGNAIQFALRGAHVIAIDMDPVRLKCARENARVY 364


>gi|126657899|ref|ZP_01729052.1| hypothetical protein CY0110_13581 [Cyanothece sp. CCY0110]
 gi|126620839|gb|EAZ91555.1| hypothetical protein CY0110_13581 [Cyanothece sp. CCY0110]
          Length = 250

 Score = 36.6 bits (83), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 24/49 (48%)

Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQE 76
          V++LLNP P + ILD   G G  +     +   VI +D  P  V   QE
Sbjct: 25 VLSLLNPQPDESILDLGCGNGTLTEKIASVAREVIGIDSSPSMVQATQE 73


>gi|308500069|ref|XP_003112220.1| hypothetical protein CRE_29769 [Caenorhabditis remanei]
 gi|308268701|gb|EFP12654.1| hypothetical protein CRE_29769 [Caenorhabditis remanei]
          Length = 571

 Score = 36.2 bits (82), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 23/40 (57%)

Query: 42  DATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81
           DA  G GG +  F   G++VIA+D DP  + C +E  R Y
Sbjct: 399 DAFTGVGGNAIQFALRGAHVIAIDMDPVRLKCARENARVY 438


>gi|330905924|ref|XP_003295285.1| hypothetical protein PTT_00269 [Pyrenophora teres f. teres 0-1]
 gi|311333539|gb|EFQ96620.1| hypothetical protein PTT_00269 [Pyrenophora teres f. teres 0-1]
          Length = 305

 Score = 36.2 bits (82), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 3/84 (3%)

Query: 26  EKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY--KE 83
           +K+   L   PG  +LDA  G+G  + +  + G NV A+D  P  V+  ++ +  Y  ++
Sbjct: 88  DKLYTRLGLKPGDRVLDAGAGSGYVAMTMARHGLNVQAIDITPHHVADAKKNVVKYGLQD 147

Query: 84  QFSLFQATFSQLQDYVPDKGVDGV 107
           +  +  A +  L  + PD+  DG+
Sbjct: 148 RIKVDYANYHDLSQF-PDESFDGI 170


>gi|268566247|ref|XP_002639672.1| Hypothetical protein CBG12390 [Caenorhabditis briggsae]
 gi|187029521|emb|CAP31376.1| hypothetical protein CBG_12390 [Caenorhabditis briggsae AF16]
          Length = 573

 Score = 36.2 bits (82), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 69/173 (39%), Gaps = 26/173 (15%)

Query: 42  DATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR-----DYKE----QFSLFQATF 92
           DA  G GG +  F   G++VIA+D DP  + C +E  R     DY +     F    AT+
Sbjct: 404 DAFTGVGGNAIQFALRGAHVIAIDMDPVRLKCARENARVYGVADYIDFICADFFDVSATW 463

Query: 93  SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC--SGISASDVVNQ 150
           +  +   P   VD V                G S+ K+   D+   C  +G+   DV   
Sbjct: 464 AADKKLAP--KVDAVFLSPPWG---------GPSYLKAKEFDLATGCCPNGVDIFDV--- 509

Query: 151 ANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSK 203
            ++K    I   L    + S++    +K +     + +   S +   TVY+ K
Sbjct: 510 -SLKISPNIAYFLPRNTKVSQLTELAIKAKSRMEIEQSSLNSKIKTITVYYGK 561


>gi|220910008|ref|YP_002485319.1| type 11 methyltransferase [Cyanothece sp. PCC 7425]
 gi|219866619|gb|ACL46958.1| Methyltransferase type 11 [Cyanothece sp. PCC 7425]
          Length = 254

 Score = 36.2 bits (82), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 28/51 (54%)

Query: 26 EKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQE 76
          E ++ LL+P  G+ ILD   G G  +      G++V+ +D DP  ++  Q+
Sbjct: 23 ESLLQLLDPQSGEDILDLGCGTGHLTAKIASSGASVLGIDADPAMIAAAQQ 73


>gi|209964251|ref|YP_002297166.1| SAM-dependent methyltransferase, putative [Rhodospirillum
          centenum SW]
 gi|209957717|gb|ACI98353.1| SAM-dependent methyltransferase, putative [Rhodospirillum
          centenum SW]
          Length = 257

 Score = 36.2 bits (82), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 25/48 (52%)

Query: 21 VPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDP 68
          V  L   V+ LL+P PG+ ILD   G G  +      G +V+A D DP
Sbjct: 25 VAALGRPVLDLLDPCPGERILDLGCGDGALTAELAARGVDVVAADADP 72


>gi|152978309|ref|YP_001343938.1| methyltransferase type 11 [Actinobacillus succinogenes 130Z]
 gi|150840032|gb|ABR74003.1| Methyltransferase type 11 [Actinobacillus succinogenes 130Z]
          Length = 257

 Score = 36.2 bits (82), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 41/74 (55%), Gaps = 4/74 (5%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYKEQFS 86
           +++LL    GK +LD   G G + R + + G++ V  +D     +   ++ + D++  F+
Sbjct: 36  MLSLLPDLTGKKLLDLACGTGEHLRLYLERGADFVTGMDLSAAMLRQAEKNLADFRPHFT 95

Query: 87  LFQAT---FSQLQD 97
           L+QA+   FSQL +
Sbjct: 96  LYQASMEDFSQLAE 109


>gi|312878905|ref|ZP_07738705.1| precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE
           subunit [Aminomonas paucivorans DSM 12260]
 gi|310782196|gb|EFQ22594.1| precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE
           subunit [Aminomonas paucivorans DSM 12260]
          Length = 429

 Score = 36.2 bits (82), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 26/43 (60%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFA 70
           V+ALL P  G  IL+   G GG +    + GS V++L+R+P A
Sbjct: 265 VLALLAPLEGSRILEIGTGTGGVTAELARAGSRVVSLERNPEA 307


>gi|119897391|ref|YP_932604.1| 23S rRNA 5-methyluridine methyltransferase [Azoarcus sp. BH72]
 gi|143580584|sp|A1K4G2|RUMA_AZOSB RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|119669804|emb|CAL93717.1| putative 23S rRNA (Uracil-5-) methyltransferase [Azoarcus sp. BH72]
          Length = 433

 Score = 36.2 bits (82), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 7/85 (8%)

Query: 23  VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR--- 79
           +L+ + + LL PAPG+ I D   G G +S    + G+ V+ ++     V+   E  R   
Sbjct: 271 LLIRRAMQLLQPAPGERIADLFCGLGNFSLPIARRGATVVGVEGSEALVARALENARRNG 330

Query: 80  -DYKEQF---SLFQATFSQLQDYVP 100
            D + +F   +LF AT   L    P
Sbjct: 331 LDSRTEFHAANLFDATEDSLAALGP 355


>gi|323697914|ref|ZP_08109826.1| ribosomal L11 methyltransferase [Desulfovibrio sp. ND132]
 gi|323457846|gb|EGB13711.1| ribosomal L11 methyltransferase [Desulfovibrio desulfuricans ND132]
          Length = 287

 Score = 35.8 bits (81), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 59/156 (37%), Gaps = 38/156 (24%)

Query: 35  APGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQ 94
           A GK  LD   G+G       K+G   I LD DP AV C  E +                
Sbjct: 146 AEGKTFLDLGTGSGILGIGLSKLGLTGIGLDIDPQAVVCAVENV---------------- 189

Query: 95  LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ------KSGPLDMRMSCSGISASDVV 148
                     +GV   + ++   IDC + G +F        SGPL + M      A D+V
Sbjct: 190 --------AANGVTESMRLAVGSIDCVEPGRTFDLVVANILSGPL-IEM------AGDIV 234

Query: 149 NQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
            +        + GIL  +KQ+  +A A  +R    P
Sbjct: 235 ARVRPGGTLVLSGILA-DKQSDAVAEAYGRRGLGEP 269


>gi|254251994|ref|ZP_04945312.1| SAM-dependent methyltransferase [Burkholderia dolosa AUO158]
 gi|124894603|gb|EAY68483.1| SAM-dependent methyltransferase [Burkholderia dolosa AUO158]
          Length = 200

 Score = 35.8 bits (81), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 32 LNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDP 68
          L PA G  +LD   G G ++R F   G  V+ALDRDP
Sbjct: 28 LVPA-GGAVLDVAAGGGRHARWFASRGHPVVALDRDP 63


>gi|326201088|ref|ZP_08190960.1| Methyltransferase type 11 [Clostridium papyrosolvens DSM 2782]
 gi|325988656|gb|EGD49480.1| Methyltransferase type 11 [Clostridium papyrosolvens DSM 2782]
          Length = 241

 Score = 35.8 bits (81), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 2/84 (2%)

Query: 36  PGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95
           P K +LD   G GGYS    + G NV A+D D   V   +   ++  +     Q    +L
Sbjct: 32  PPKSVLDIACGTGGYSLELDRRGYNVTAVDLDKEMVRRLEVKAKENNQSVKFMQGNMLEL 91

Query: 96  QDYVPDKGVDGVVFDLGVSSMQID 119
           Q+ + D     +VF +G S + ++
Sbjct: 92  QNKISDSF--DLVFCIGNSIVHLE 113


Searching..................................................done


Results from round 2




>gi|255764511|ref|YP_003065518.2| S-adenosyl-methyltransferase MraW [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254547862|gb|ACT57578.2| S-adenosyl-methyltransferase MraW [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 341

 Score =  491 bits (1264), Expect = e-137,   Method: Composition-based stats.
 Identities = 341/341 (100%), Positives = 341/341 (100%)

Query: 1   MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN 60
           MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN
Sbjct: 1   MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN 60

Query: 61  VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDC 120
           VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDC
Sbjct: 61  VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDC 120

Query: 121 GDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           GDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR
Sbjct: 121 GDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180

Query: 181 QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK
Sbjct: 181 QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300
           AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV
Sbjct: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300

Query: 301 AFNRRSRSAKLRAGMRTVERSIEDDSFVHLPRLPTLSQFRG 341
           AFNRRSRSAKLRAGMRTVERSIEDDSFVHLPRLPTLSQFRG
Sbjct: 301 AFNRRSRSAKLRAGMRTVERSIEDDSFVHLPRLPTLSQFRG 341


>gi|315122411|ref|YP_004062900.1| S-adenosyl-methyltransferase MraW [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495813|gb|ADR52412.1| S-adenosyl-methyltransferase MraW [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 348

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 264/342 (77%), Positives = 298/342 (87%), Gaps = 1/342 (0%)

Query: 1   MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN 60
           M+S+  K  SS I  T   H+PVLLE+VIALL P+PGK+I+DATFGAGGYS SFC+MGS+
Sbjct: 1   MKSRYLKETSSPIDSTTNGHIPVLLEEVIALLKPSPGKIIVDATFGAGGYSHSFCQMGSS 60

Query: 61  VIALDRDPFAVSCGQETMRDY-KEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQID 119
           VIALDRDP AV+ GQE M+DY K++ SLF+ATFS+L+DYVPD GVDG+VFDLGVSSMQID
Sbjct: 61  VIALDRDPLAVAAGQEIMKDYIKKKISLFEATFSRLKDYVPDNGVDGIVFDLGVSSMQID 120

Query: 120 CGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
           CGDRGFSFQK GPLDMRMSCSG+SASDVVN A+VKDL RILGILGEEKQASRIAHAIVKR
Sbjct: 121 CGDRGFSFQKHGPLDMRMSCSGVSASDVVNHADVKDLIRILGILGEEKQASRIAHAIVKR 180

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
           R+  PFQTT+DLSSLIQ TVY   NNRIHPATRSFQALRIFVN+EI EL +GL SAEKAL
Sbjct: 181 RKHLPFQTTEDLSSLIQNTVYIRNNNRIHPATRSFQALRIFVNDEIRELEKGLLSAEKAL 240

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
           K GG+LIVVSFHSLEDRLVKKFFASRSGKV AVRHMIPS+ HPAVFQS+TKKVV+PTQ D
Sbjct: 241 KDGGVLIVVSFHSLEDRLVKKFFASRSGKVTAVRHMIPSHIHPAVFQSLTKKVVIPTQSD 300

Query: 300 VAFNRRSRSAKLRAGMRTVERSIEDDSFVHLPRLPTLSQFRG 341
           +A NRR+RSAKLR G+RT  + ++D SF +L  LP LSQFRG
Sbjct: 301 IAKNRRARSAKLRVGIRTSAQPMKDLSFEYLAHLPALSQFRG 342


>gi|323701280|ref|ZP_08112955.1| S-adenosyl-methyltransferase MraW [Desulfotomaculum nigrificans DSM
           574]
 gi|323533882|gb|EGB23746.1| S-adenosyl-methyltransferase MraW [Desulfotomaculum nigrificans DSM
           574]
          Length = 311

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 113/307 (36%), Positives = 171/307 (55%), Gaps = 9/307 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
            H+ VLL++ I  LN  P  + +D T G  G+S    +    G  +I LD+DP A++  +
Sbjct: 4   KHISVLLKESINGLNINPQGIYVDCTLGGAGHSTEILRRLGPGGRLIGLDQDPAAIANAE 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + ++ +  +F   +A F  ++  + + G   VDGV+FDLGVSS Q+D  +RGFS+     
Sbjct: 64  QRLQRFAGRFQAVRANFVGIKQVLAELGISTVDGVLFDLGVSSYQLDTPERGFSYMHDAE 123

Query: 133 LDMRMSCSGIS-ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM     + A ++VN    ++LT I+   GEE+ A RIA  IV+ RQ  P  TT  L
Sbjct: 124 LDMRMDPDQPTSAKELVNDLPEEELTNIIRKYGEERWAKRIASFIVRERQRRPITTTGQL 183

Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+  V   ++    HPA R+FQALRI VNNE+  L   ++ A + LK GG + V++F
Sbjct: 184 VEIIKAAVPANARREGPHPAKRTFQALRIAVNNELGILKGAIQGAVQVLKPGGRICVITF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR++K  F   +          + +       + IT K + P  E++A+N R+RSA
Sbjct: 244 HSLEDRIIKDTFKELANPCTCPPSFPVCNCGKQPQVKIITNKPIEPGAEELAYNPRARSA 303

Query: 310 KLRAGMR 316
           KLR   +
Sbjct: 304 KLRIAEK 310


>gi|254976251|ref|ZP_05272723.1| S-adenosyl-methyltransferase [Clostridium difficile QCD-66c26]
 gi|255093637|ref|ZP_05323115.1| S-adenosyl-methyltransferase [Clostridium difficile CIP 107932]
 gi|255315386|ref|ZP_05356969.1| S-adenosyl-methyltransferase [Clostridium difficile QCD-76w55]
 gi|255518051|ref|ZP_05385727.1| S-adenosyl-methyltransferase [Clostridium difficile QCD-97b34]
 gi|255651167|ref|ZP_05398069.1| S-adenosyl-methyltransferase [Clostridium difficile QCD-37x79]
 gi|260684233|ref|YP_003215518.1| S-adenosyl-methyltransferase MraW [Clostridium difficile CD196]
 gi|260687892|ref|YP_003219026.1| S-adenosyl-methyltransferase MraW [Clostridium difficile R20291]
 gi|306521014|ref|ZP_07407361.1| S-adenosyl-methyltransferase MraW [Clostridium difficile QCD-32g58]
 gi|260210396|emb|CBA64792.1| S-adenosyl-methyltransferase [Clostridium difficile CD196]
 gi|260213909|emb|CBE05954.1| S-adenosyl-methyltransferase [Clostridium difficile R20291]
          Length = 311

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 115/308 (37%), Positives = 172/308 (55%), Gaps = 9/308 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
            HV VLL + I  LN  P  V +D T G  G+S+   K  S+    I  D+D  A+S  +
Sbjct: 4   HHVSVLLNECIENLNIKPDGVYVDCTMGGAGHSKEIVKKLSDKGLFIGFDQDKNAISTAK 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E + +Y+ +     + F  +++ +   GV   DGV+ DLGVSS Q+D  DRGFS+ +  P
Sbjct: 64  ERLSEYESRVKFVHSNFENIKEELEKIGVYKIDGVLADLGVSSHQLDEADRGFSYMQDAP 123

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM      SA DVVN     +LT+I+   GE+  A RIA  IV+ R + P +TT  L
Sbjct: 124 LDMRMDVRCEFSAYDVVNTYTEDELTKIIKDYGEDNWAKRIAKFIVEERANKPIETTGKL 183

Query: 192 SSLIQKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+K +      +  HPA R+FQA+RI VNNE+  + + +  A   +  GG + +++F
Sbjct: 184 VDIIKKAIPKKARIDGPHPAKRTFQAIRIEVNNELGVITKMINDASSIMNKGGRICIITF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  F   +   +  +H  I      +  + IT+K ++P++E++  N RSRSA
Sbjct: 244 HSLEDRIVKNAFKHLASDCICPQHLPICQCDKESEVKIITRKPILPSEEEIEVNPRSRSA 303

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 304 KLRVAEKI 311


>gi|255101826|ref|ZP_05330803.1| S-adenosyl-methyltransferase [Clostridium difficile QCD-63q42]
 gi|255307693|ref|ZP_05351864.1| S-adenosyl-methyltransferase [Clostridium difficile ATCC 43255]
          Length = 311

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 115/308 (37%), Positives = 173/308 (56%), Gaps = 9/308 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
            HV VLL + I  LN  P  V +D T G  G+S+   K  S+    I  D+D  A+S  +
Sbjct: 4   HHVSVLLNECIENLNIKPDGVYVDCTMGGAGHSKEIVKKLSDKGLFIGFDQDKNAISTAK 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E + +Y+ +     + F  +++ +   GV   DGV+ DLGVSS Q+D  DRGFS+ +  P
Sbjct: 64  ERLSEYESRVKFVHSNFENIKEELEKIGVYKIDGVLADLGVSSHQLDEADRGFSYMQDAP 123

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM      SA DVVN     +LT+I+   GE+  A RIA  IV+ R + P +TT +L
Sbjct: 124 LDMRMDVRCEFSAYDVVNTYTEDELTKIIKDYGEDNWAKRIAKFIVEERANKPIETTGEL 183

Query: 192 SSLIQKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+K +      +  HPA R+FQA+RI VNNE+  + + +  A   +  GG + +++F
Sbjct: 184 VDVIKKAIPKKARIDGPHPAKRTFQAIRIEVNNELGVITKMINDASSIMNEGGRICIITF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  F   +   +  +H  I      +  + IT+K ++P++E++  N RSRSA
Sbjct: 244 HSLEDRIVKNAFKHLASDCICPQHLPICQCDKESEVKIITRKPILPSEEEIEVNPRSRSA 303

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 304 KLRVAEKI 311


>gi|210622330|ref|ZP_03293099.1| hypothetical protein CLOHIR_01047 [Clostridium hiranonis DSM 13275]
 gi|210154318|gb|EEA85324.1| hypothetical protein CLOHIR_01047 [Clostridium hiranonis DSM 13275]
          Length = 311

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 112/307 (36%), Positives = 171/307 (55%), Gaps = 9/307 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
           +HV VLL + I  LN  P  V +D T G  G+S+   K  S+    I  D+D  A++  +
Sbjct: 4   NHVSVLLNECIDNLNIKPDGVYVDCTMGGAGHSKEIVKRLSSDGLFIGFDQDKNAIATAK 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E + +Y ++     + F  +++ +   GV   DGV+ DLGVSS Q+D  DRGFS+ +  P
Sbjct: 64  ERLAEYSDRVKFVHSNFENIKEELEKIGVHKIDGVLADLGVSSHQLDEADRGFSYMQDAP 123

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM      SA +VVN+   ++L +I+   GE+  A RIA  IV+ R   P +TT +L
Sbjct: 124 LDMRMDVRKDFSAYNVVNEYTEEELAKIIKDYGEDNWAKRIAKFIVEGRAEKPIETTGEL 183

Query: 192 SSLIQKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+K +      +  HPA R+FQA+RI VNNE+  + + +  A   +  GG + +++F
Sbjct: 184 VDIIKKAIPKKARIDGPHPAKRTFQAIRIEVNNELGVITKMIDDACSIMNPGGRICIITF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  F   S   +    M        +  + IT+K ++P+ E++  N RSRSA
Sbjct: 244 HSLEDRIVKNEFKYLSLDCVCPPEMPFCQCDKVSEVKVITRKPILPSAEEIEMNPRSRSA 303

Query: 310 KLRAGMR 316
           KLR   +
Sbjct: 304 KLRVAEK 310


>gi|126700272|ref|YP_001089169.1| S-adenosyl-methyltransferase MraW [Clostridium difficile 630]
 gi|123174036|sp|Q182Z2|RSMH_CLOD6 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|115251709|emb|CAJ69544.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Clostridium difficile]
          Length = 311

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 115/308 (37%), Positives = 172/308 (55%), Gaps = 9/308 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
            HV VLL + I  LN  P  V +D T G  G+S+   K  S+    I  D+D  A+S  +
Sbjct: 4   HHVSVLLNECIENLNIKPDGVYVDCTMGGAGHSKEIVKKLSDKGLFIGFDQDKNAISTAK 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E + +Y+ +     + F  +++ +   GV   DGV+ DLGVSS Q+D  DRGFS+ +  P
Sbjct: 64  ERLSEYESRVKFVHSNFENIKEELEKIGVYKIDGVLADLGVSSHQLDEADRGFSYMQDAP 123

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM      SA DVVN     +LT+I+   GE+  A RIA  IV+ R + P +TT +L
Sbjct: 124 LDMRMDVRCEFSAYDVVNTYTEDELTKIIKDYGEDNWAKRIAKFIVEERANKPIETTGEL 183

Query: 192 SSLIQKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+K +         HPA R+FQA+RI VNNE+  + + +  A   +  GG + +++F
Sbjct: 184 VDVIKKAIPKKARIVGPHPAKRTFQAIRIEVNNELGVITKMINDASSIMNEGGRICIITF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  F   +   +  +H  I      +  + IT+K ++P++E++  N RSRSA
Sbjct: 244 HSLEDRIVKNAFKHLASDCICPQHLPICQCDKESEVKIITRKPILPSEEEIEVNPRSRSA 303

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 304 KLRVAEKI 311


>gi|255656635|ref|ZP_05402044.1| S-adenosyl-methyltransferase [Clostridium difficile QCD-23m63]
 gi|296449909|ref|ZP_06891673.1| S-adenosyl-methyltransferase MraW [Clostridium difficile NAP08]
 gi|296878290|ref|ZP_06902299.1| S-adenosyl-methyltransferase MraW [Clostridium difficile NAP07]
 gi|296261179|gb|EFH08010.1| S-adenosyl-methyltransferase MraW [Clostridium difficile NAP08]
 gi|296430738|gb|EFH16576.1| S-adenosyl-methyltransferase MraW [Clostridium difficile NAP07]
          Length = 311

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 114/308 (37%), Positives = 172/308 (55%), Gaps = 9/308 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
            HV VLL + I  LN  P  V +D T G  G+S+   K  S+    I  D+D  A++  +
Sbjct: 4   HHVSVLLNECIENLNIKPDGVYVDCTMGGAGHSKEIVKKLSDKGLFIGFDQDKNAINTAK 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E + +Y+ +     + F  +++ +   GV   DGV+ DLGVSS Q+D  DRGFS+ +  P
Sbjct: 64  ERLSEYEGRVKFVHSNFENIKEELEKIGVYKIDGVLADLGVSSHQLDEADRGFSYMQDAP 123

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM      SA DVVN     +LT+I+   GE+  A RIA  IV+ R +   +TT +L
Sbjct: 124 LDMRMDVRCEFSAYDVVNTYTEDELTKIIKDYGEDNWAKRIAKFIVEERANKTIETTGEL 183

Query: 192 SSLIQKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+K +      +  HPA R+FQA+RI VNNE+  + + +  A   +  GG + +++F
Sbjct: 184 VDIIKKAIPKKARIDGPHPAKRTFQAIRIEVNNELGVITKMINDASSIMNEGGRICIITF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  F   +   +  +H  I      +  + IT+K ++P++E+V  N RSRSA
Sbjct: 244 HSLEDRIVKNAFKYLASDCICPQHLPICQCDKESEVKIITRKPILPSEEEVEANPRSRSA 303

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 304 KLRVAEKI 311


>gi|78043538|ref|YP_360897.1| S-adenosyl-methyltransferase MraW [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|88909191|sp|Q3AAD7|RSMH_CARHZ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|77995653|gb|ABB14552.1| S-adenosyl-methyltransferase MraW [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 311

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 128/303 (42%), Positives = 177/303 (58%), Gaps = 6/303 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQETM 78
           HVPVLL + I  LN   G V +DAT G GG+S    K     V+ LD+D  A++   + +
Sbjct: 5   HVPVLLNETIEHLNLKAGGVYVDATLGGGGHSEEILKRADCRVVGLDQDEDALNHAAKRL 64

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
             + ++F   ++ F  ++  V   G   VDGV+ DLGVSS Q+D   +GFSFQ  GPLDM
Sbjct: 65  APFGDRFIPVKSNFRNIRKVVYRLGLDAVDGVLMDLGVSSFQLDNPLKGFSFQHDGPLDM 124

Query: 136 RMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM      +A+DVVN    K+L RI    GEE+ A +IA AIVKRR+  PF +T +L+  
Sbjct: 125 RMDPQNPKTAADVVNTYPEKELIRIFYEYGEERYAPQIARAIVKRREKKPFTSTLELAEE 184

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           I + V        HPA R FQA+RI VN+E+  L +GL  A + LK GG ++V++FHSLE
Sbjct: 185 IIRAVPAKARREKHPAKRVFQAIRIEVNDELSSLEEGLVGAVEVLKPGGRIVVITFHSLE 244

Query: 255 DRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           DRLVK FF       +  +   +         + ITKK +VP++E++  NRR+ SAKLRA
Sbjct: 245 DRLVKNFFRREENPCICPKDFPMCVCGKKPRLKVITKKPLVPSEEEIEKNRRAHSAKLRA 304

Query: 314 GMR 316
             +
Sbjct: 305 AEK 307


>gi|229086483|ref|ZP_04218655.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus Rock3-44]
 gi|228696800|gb|EEL49613.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus Rock3-44]
          Length = 332

 Score =  409 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 114/310 (36%), Positives = 174/310 (56%), Gaps = 9/310 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72
           T+  HV VLL++ +  L+  PG   +D T G GG+S         G  +IA D+D  A+ 
Sbjct: 22  TMFKHVTVLLKETVDGLDIKPGGTYVDCTLGGGGHSSYLLSRLTEGGKLIAFDQDEIAIQ 81

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK 129
             +E    Y +QF   ++ F  L + + + G   VDG++FDLGVSS Q+D  +RGFS+  
Sbjct: 82  NAKEKFSSYGDQFVTVKSNFRYLSEKLQELGITEVDGILFDLGVSSPQLDTPERGFSYHH 141

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM     ++A +VVN  + + L RI    GEEK + +IA  I   R++   +TT
Sbjct: 142 DAPLDMRMDQDASLTAYEVVNNWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKTIETT 201

Query: 189 QDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L  LI++ +   ++    HPA R FQA+RI VN+E++   + L SA K +K GG + V
Sbjct: 202 GELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIKMVKPGGRVSV 261

Query: 248 VSFHSLEDRLVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           ++FHSLEDR+ K  F   S    +     I  +      + IT+K ++P++E++  N R+
Sbjct: 262 ITFHSLEDRICKTTFKRNSSTPQLPPGLPIIPDEFKPKLKLITRKPILPSEEELEENNRA 321

Query: 307 RSAKLRAGMR 316
           RSAKLR   +
Sbjct: 322 RSAKLRIAEK 331


>gi|226313432|ref|YP_002773326.1| S-adenosyl-methyltransferase MraW [Brevibacillus brevis NBRC
           100599]
 gi|263445821|sp|C0ZGB3|RSMH_BREBN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|226096380|dbj|BAH44822.1| S-adenosyl-methyltransferase [Brevibacillus brevis NBRC 100599]
          Length = 314

 Score =  409 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 116/317 (36%), Positives = 191/317 (60%), Gaps = 13/317 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALD 65
           M++   H    HV VL+++ +  LN  PG + +D T G  G+S         G  +IA+D
Sbjct: 1   MTTLSFH----HVTVLMDEAVQGLNIRPGGIYVDCTLGGAGHSSLIASKLTEGGRLIAID 56

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGD 122
           +D +A+   +E +  Y ++ +L ++ F  ++D V D    GVDGV+FDLGVSS Q+D G+
Sbjct: 57  QDDWALDNARERLASYMDRVTLVKSNFRHIKDIVKDLGLSGVDGVLFDLGVSSPQLDEGE 116

Query: 123 RGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFS+    PLDMRM     +SA D++N+ + +++ +I+ + GEEK + RIA  IV++R+
Sbjct: 117 RGFSYNADAPLDMRMDQQAPLSAYDIINEWDEEEIAKIIWLYGEEKFSRRIARQIVQQRK 176

Query: 182 SAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
             P QTT +L  LI++ +  + +    HPA R+FQA+RI VN+E++   + +  A + L 
Sbjct: 177 KQPIQTTGELVELIKEGIPAAARRTGPHPAKRTFQAIRIAVNDELDAFKEAVVDAIEVLN 236

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQED 299
             G + V++FHSLEDR+ K+ +   S          I +  + AV + IT+K ++P++E+
Sbjct: 237 PEGRVSVITFHSLEDRICKQIYQDFSKGCTCPPAFPICTCGNKAVVKVITRKPILPSEEE 296

Query: 300 VAFNRRSRSAKLRAGMR 316
           +  N+R+RSAKLR   +
Sbjct: 297 LEANKRARSAKLRVAEK 313


>gi|228992654|ref|ZP_04152580.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           pseudomycoides DSM 12442]
 gi|228766986|gb|EEM15623.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           pseudomycoides DSM 12442]
          Length = 317

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 114/310 (36%), Positives = 173/310 (55%), Gaps = 9/310 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72
           T+  HV VLL++ +  L+  PG   +D T G GG+S         G  +IA D+D  A+ 
Sbjct: 7   TMFKHVTVLLKETVDGLDIKPGGTYVDCTLGGGGHSSYLLSQLTEGGKLIAFDQDEIAIQ 66

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK 129
             +E    Y +QF   ++ F  L + + + G   VDG++FDLGVSS Q+D  +RGFS+  
Sbjct: 67  NAKERFSSYGDQFITVKSNFRYLSEKLHELGITEVDGILFDLGVSSPQLDTPERGFSYHH 126

Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM     ++A DVVN  + + L RI    GEEK + +IA  I   R++   +TT
Sbjct: 127 DAPLDMRMDQDAPLTAYDVVNNWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETT 186

Query: 189 QDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L  LI++ +   ++    HPA R FQA+RI VN+E++   + L SA + +K GG + V
Sbjct: 187 GELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRISV 246

Query: 248 VSFHSLEDRLVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           ++FHSLEDR+ K  F   S    +     I  +      + IT+K ++P+ E++  N R+
Sbjct: 247 ITFHSLEDRICKTTFKRNSTTPQLPPGLPIIPDEFKPKLKLITRKPILPSDEELEENNRA 306

Query: 307 RSAKLRAGMR 316
           RSAKLR   +
Sbjct: 307 RSAKLRIAEK 316


>gi|164686379|ref|ZP_02210409.1| hypothetical protein CLOBAR_02817 [Clostridium bartlettii DSM
           16795]
 gi|164601981|gb|EDQ95446.1| hypothetical protein CLOBAR_02817 [Clostridium bartlettii DSM
           16795]
          Length = 311

 Score =  408 bits (1050), Expect = e-112,   Method: Composition-based stats.
 Identities = 113/307 (36%), Positives = 169/307 (55%), Gaps = 9/307 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
           +HV VLL++ I  LN     V +D T G  G+S+   K  S     I  D+D  A++  +
Sbjct: 4   NHVSVLLDECIDNLNIKEDGVYVDCTMGGAGHSKEIVKRLSKDGLFIGFDQDKNAIATAK 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E + +Y ++     + FS +++ +   GV   DGV+ DLGVSS Q+D  DRGFS+    P
Sbjct: 64  ERLAEYSDRVRFVHSNFSNIKEELEKIGVYKIDGVLADLGVSSHQLDEADRGFSYMHDAP 123

Query: 133 LDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM      SA DVVN    + L +I+   GE+  A RIA  IV+ R+  P + T +L
Sbjct: 124 LDMRMDIRKPFSAYDVVNTYTEEQLAKIIKDYGEDNWAKRIAKFIVETREEKPIEKTGEL 183

Query: 192 SSLIQKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+K +      +  HPA R+FQA+RI VNNE+  + + +  A   +  GG + +++F
Sbjct: 184 VDIIKKAIPKKARIDGPHPAKRTFQAIRIEVNNELGVINKMIDDAVSMMNKGGRICIITF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  F   S   +      I      +  + IT+K ++P++E+V  N RSRSA
Sbjct: 244 HSLEDRIVKNEFKELSLSCVCPPELPICRCDKVSEVKVITRKPILPSKEEVEANPRSRSA 303

Query: 310 KLRAGMR 316
           KLR   +
Sbjct: 304 KLRVAEK 310


>gi|251797883|ref|YP_003012614.1| S-adenosyl-methyltransferase MraW [Paenibacillus sp. JDR-2]
 gi|262824736|sp|C6D563|RSMH_PAESJ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|247545509|gb|ACT02528.1| S-adenosyl-methyltransferase MraW [Paenibacillus sp. JDR-2]
          Length = 316

 Score =  408 bits (1050), Expect = e-112,   Method: Composition-based stats.
 Identities = 114/315 (36%), Positives = 176/315 (55%), Gaps = 15/315 (4%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSC 73
           +  H+ VLLE+ +  L   PG + +D T G  G+S         G  +IA D+D  A+  
Sbjct: 1   MFQHITVLLEEAVDGLAIKPGGIYVDCTLGGAGHSERIVSQLSGGGRLIAFDQDDAALDN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---------DGVVFDLGVSSMQIDCGDRG 124
            +  +  Y ++ +L ++ F  L++ +    V         DG++FDLGVSS Q+D  +RG
Sbjct: 61  ARVRLAPYMDRVTLVKSNFRYLEEMLLTCDVPTVDGVPQVDGILFDLGVSSPQLDEAERG 120

Query: 125 FSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           FS+    PLDMRM   G ++A D+VN    ++++RIL + GEEK A  IA  IV+ R++A
Sbjct: 121 FSYNHDAPLDMRMDQGGALTAYDIVNSWEEREISRILHVYGEEKFARSIARKIVQARENA 180

Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           P +TT +L+ L++  +  + +    HPA RSFQALRI VN+E+      L  A K ++ G
Sbjct: 181 PIETTGELAELVKTGIPAAARRTGGHPAKRSFQALRIAVNDELGAEEDALEEAVKCIRPG 240

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVA 301
           G + V++FHSLEDR+ K+ FAS   K                  + + +K +VPT++++ 
Sbjct: 241 GRISVITFHSLEDRICKQLFASYVEKCTCPPDFPKCVCGGTGKLRLVNRKPIVPTEQELE 300

Query: 302 FNRRSRSAKLRAGMR 316
            N RSRSAKLR   +
Sbjct: 301 VNPRSRSAKLRVAEK 315


>gi|228998700|ref|ZP_04158287.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           mycoides Rock3-17]
 gi|229006202|ref|ZP_04163888.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           mycoides Rock1-4]
 gi|228755043|gb|EEM04402.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           mycoides Rock1-4]
 gi|228761168|gb|EEM10127.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           mycoides Rock3-17]
          Length = 317

 Score =  408 bits (1049), Expect = e-112,   Method: Composition-based stats.
 Identities = 113/310 (36%), Positives = 172/310 (55%), Gaps = 9/310 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72
           T+  HV VLL++ +  L+  PG   +D T G GG+S         G  +IA D+D  A+ 
Sbjct: 7   TMFKHVTVLLKETVDGLDIKPGGTYVDCTLGGGGHSSYLLSQLTEGGKLIAFDQDEIAIQ 66

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK 129
             +E    Y +QF   ++ F  L + + + G   VDG++FDLGVSS Q+D  +RGFS+  
Sbjct: 67  NAKERFSSYGDQFITVKSNFRYLSEKLHELGITEVDGILFDLGVSSPQLDTPERGFSYHH 126

Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM     ++A DVVN  + + L RI    GEEK + +I   I   R++   +TT
Sbjct: 127 DAPLDMRMDQDAPLTAYDVVNNWSYEQLVRIFFQYGEEKFSKQITRKIEAYRENKAIETT 186

Query: 189 QDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L  LI++ +   ++    HPA R FQA+RI VN+E++   + L SA + +K GG + V
Sbjct: 187 GELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRISV 246

Query: 248 VSFHSLEDRLVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           ++FHSLEDR+ K  F   S    +     I  +      + IT+K ++P+ E++  N R+
Sbjct: 247 ITFHSLEDRICKTTFKRNSTTPQLPPGLPIIPDEFKPKLKLITRKPILPSDEELEENNRA 306

Query: 307 RSAKLRAGMR 316
           RSAKLR   +
Sbjct: 307 RSAKLRIAEK 316


>gi|20808080|ref|NP_623251.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter tengcongensis
           MB4]
 gi|254479532|ref|ZP_05092851.1| S-adenosyl-methyltransferase MraW [Carboxydibrachium pacificum DSM
           12653]
 gi|21759279|sp|Q8R9F9|RSMH_THETN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|20516663|gb|AAM24855.1| predicted S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [Thermoanaerobacter
           tengcongensis MB4]
 gi|214034534|gb|EEB75289.1| S-adenosyl-methyltransferase MraW [Carboxydibrachium pacificum DSM
           12653]
          Length = 308

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 118/304 (38%), Positives = 176/304 (57%), Gaps = 8/304 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77
           H  VLL++ I  LN  P  + +D T G GG+S    K      +IA+DRD  A+   +E 
Sbjct: 5   HKSVLLKETIEHLNINPEGIYVDGTLGGGGHSEEILKRLTTGKLIAIDRDEEAILAAKER 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++DYK      +  F  +++ + + G   VDG++ DLGVSS Q++  +RGFS+ K  PLD
Sbjct: 65  LKDYK-NVIYIKDNFKNIKEILRNLGIEKVDGILLDLGVSSYQLEEVERGFSYMKDAPLD 123

Query: 135 MRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM  +   SA DVVN+ + K+L R++   GEEK ASRIA  IV+ R+    +TT  L  
Sbjct: 124 MRMDKTSPFSAYDVVNRYSEKELERVIREYGEEKWASRIAKFIVEERKKGDIKTTSQLVE 183

Query: 194 LIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +I+K +   ++    HPA R+FQA+RI VN E+++L + L    + L+  G + V++FHS
Sbjct: 184 IIKKAIPASARRTGPHPAKRTFQAIRIEVNEELKDLDRALEDMVEVLRGKGRIAVITFHS 243

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK  F            +  +     V + ITKK ++P++E+V  N RSRSAKLR
Sbjct: 244 LEDRIVKNTFKKLENPCTCPPGLPCTCGKQPVIKIITKKPILPSKEEVEENPRSRSAKLR 303

Query: 313 AGMR 316
              +
Sbjct: 304 VAEK 307


>gi|253576122|ref|ZP_04853454.1| MraW methylase MraW [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251844465|gb|EES72481.1| MraW methylase MraW [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 324

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 113/316 (35%), Positives = 172/316 (54%), Gaps = 16/316 (5%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73
           +  H+ VL E+    L   P  + +D T G GG+S         G  +IA D+D +A+  
Sbjct: 1   MFHHITVLKEEATEGLRIKPDGIYVDCTLGGGGHSSVILSKLGPGGRLIAFDQDDWALDN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD----------KGVDGVVFDLGVSSMQIDCGDR 123
            +E +  Y ++ +L ++ F  ++  + +            VDGV+FDLGVSS Q D G+R
Sbjct: 61  AKERLAAYADKLTLVKSNFRYIEQKLREIEGVPQLNGVPQVDGVLFDLGVSSPQFDEGER 120

Query: 124 GFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GFS+    PLDMRM  S  ++A ++VN    +++ RIL   GEEK +  IA  I  RR  
Sbjct: 121 GFSYNADAPLDMRMDQSAALTAREIVNTWPEREIARILFQYGEEKFSRWIAKVIADRRAQ 180

Query: 183 APFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            P +TT  L  LI++ +  + +    HPA RSFQALRI VN+E+    +GL +A + L  
Sbjct: 181 EPIETTGQLVELIKEGIPAAARRTGGHPAKRSFQALRIAVNDELGAFEEGLHAAIRCLAP 240

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDV 300
            G + V++FHSLEDR+ K+ FAS   K        +         + I +K +VP+++++
Sbjct: 241 EGRVSVITFHSLEDRICKQIFASYVEKCTCPPDFPMCVCGGKGSLKLINRKPIVPSEQEL 300

Query: 301 AFNRRSRSAKLRAGMR 316
           A N R+RSAKLR   +
Sbjct: 301 ADNPRARSAKLRVAEK 316


>gi|319649673|ref|ZP_08003829.1| S-adenosyl-methyltransferase MraW [Bacillus sp. 2_A_57_CT2]
 gi|317398835|gb|EFV79517.1| S-adenosyl-methyltransferase MraW [Bacillus sp. 2_A_57_CT2]
          Length = 310

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 108/309 (34%), Positives = 171/309 (55%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           + +H  VLL++ +  LN  P  V +D T G  G+S            + A D+D  A++ 
Sbjct: 1   MFEHTTVLLKETVEGLNIHPDGVYVDCTLGGAGHSELILSQLSEKGKLYAFDQDDTAIAH 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E + +Y ++ ++ ++ F  LQ+ + + GV   DGV++DLGVSS Q+D  +RGFS+   
Sbjct: 61  AKEKLAEYGDRITIIKSNFKYLQEELANLGVSKVDGVLYDLGVSSPQLDTPERGFSYHND 120

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM   + ISA DVVN+    +L +I    GEEK + +IA  I   R+ +P +TT 
Sbjct: 121 APLDMRMDTGADISAYDVVNRWEYGELVKIFFRYGEEKFSKQIARKIEAAREVSPIETTG 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L  LI++ +   ++    HPA R FQA+RI VN+E+      L  A   L   G + V+
Sbjct: 181 QLVELIKEAIPAPARRKGGHPAKRVFQAIRIAVNDELGVFEDSLHQAIDILNPNGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F   S    +     I  + +  + + I +K ++P++E++  N R+R
Sbjct: 241 TFHSLEDRICKAAFKKASETPNLPPGLPIIPDEYKPILKLINRKPILPSEEELEHNNRAR 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRIAEK 309


>gi|15965937|ref|NP_386290.1| S-adenosyl-methyltransferase MraW [Sinorhizobium meliloti 1021]
 gi|307308247|ref|ZP_07587956.1| S-adenosyl-methyltransferase MraW [Sinorhizobium meliloti BL225C]
 gi|307319714|ref|ZP_07599139.1| S-adenosyl-methyltransferase MraW [Sinorhizobium meliloti AK83]
 gi|20139051|sp|Q92NL4|RSMH_RHIME RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|15075206|emb|CAC46763.1| Probable SAM-dependent methytransferase [Sinorhizobium meliloti
           1021]
 gi|306894645|gb|EFN25406.1| S-adenosyl-methyltransferase MraW [Sinorhizobium meliloti AK83]
 gi|306901245|gb|EFN31851.1| S-adenosyl-methyltransferase MraW [Sinorhizobium meliloti BL225C]
          Length = 341

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 179/323 (55%), Positives = 231/323 (71%), Gaps = 1/323 (0%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+PVLL++V+A L+PAPGK+ILD TFGAGGY+ +    G++V+ALDRDP A++ GQ  M 
Sbjct: 19  HIPVLLKEVLAALDPAPGKIILDGTFGAGGYASAILDAGADVVALDRDPTAIAAGQSMMH 78

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
               +  L  + FS L ++ P +G+DGVV D+GVSSMQID  +RGFSFQK GPLDMRMS 
Sbjct: 79  ASGGRLKLVHSRFSDLAEHAPAQGLDGVVLDIGVSSMQIDEAERGFSFQKKGPLDMRMSA 138

Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199
           +G+SA+DVVN+A V DL RI G LGEEKQA RIA AI KRR   PF+TT+DL++LI+   
Sbjct: 139 AGVSAADVVNRAKVSDLIRIFGFLGEEKQAGRIARAIEKRRAETPFETTRDLANLIETVT 198

Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259
                ++IHPATR FQALRIFVN+E+ ELA  L +AE+ALK GG L+VV+FHSLEDR+VK
Sbjct: 199 PRKAKDKIHPATRVFQALRIFVNDELGELAHALFAAERALKPGGRLVVVTFHSLEDRIVK 258

Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319
            FF  RSGK    RH+    A  A F  + K +V  ++E+ + N R+RSAKLRAG+RT  
Sbjct: 259 TFFQDRSGKAGGSRHLPLVTARAATFTPVGKPMVAASEEEASRNPRARSAKLRAGVRTEA 318

Query: 320 RSIEDD-SFVHLPRLPTLSQFRG 341
            S   D S  +LP L +L++  G
Sbjct: 319 PSPGADLSIFNLPELASLARLGG 341


>gi|325293473|ref|YP_004279337.1| S-adenosyl-methyltransferase MraW [Agrobacterium sp. H13-3]
 gi|325061326|gb|ADY65017.1| S-adenosyl-methyltransferase MraW [Agrobacterium sp. H13-3]
          Length = 341

 Score =  405 bits (1041), Expect = e-111,   Method: Composition-based stats.
 Identities = 185/333 (55%), Positives = 233/333 (69%), Gaps = 1/333 (0%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPF 69
           SS        H+PVLL +VIA L PA GKVILD TFGAGGY+++    G+NVIALDRDP 
Sbjct: 9   SSDAGEGPQRHIPVLLREVIAALEPASGKVILDGTFGAGGYTQAILDQGANVIALDRDPN 68

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
           A++ GQ  +     + +L Q+ FS L  + P+ G+DGVV D+GVSSMQID  +RGFSFQK
Sbjct: 69  AIAGGQAMVAANGGRLTLIQSQFSDLARHAPEGGLDGVVLDIGVSSMQIDEAERGFSFQK 128

Query: 130 SGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
           +GPLDMRMS SG+SA+DVVN+A V DL RI G LGEEKQ  RIA AI KRR   PF+TT+
Sbjct: 129 NGPLDMRMSSSGVSAADVVNRAKVGDLIRIFGFLGEEKQPGRIARAIEKRRAEEPFRTTR 188

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           DL+ LI+        ++IHPATR FQALR+FVN+E+ ELAQ L +AE+ALK GG L+VV+
Sbjct: 189 DLAGLIEIVTPRKAKDKIHPATRVFQALRVFVNDELGELAQALFAAERALKPGGRLVVVT 248

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDR+VKKFF+ RSGK    RH+      PA+F++I K +V  + E+   N R+RSA
Sbjct: 249 FHSLEDRIVKKFFSERSGKAAGSRHLPMVEDKPAIFENIGKPMVAASDEEAEINPRARSA 308

Query: 310 KLRAGMRTVERSI-EDDSFVHLPRLPTLSQFRG 341
           KLRAG+RT   +   D S   LP L +L +  G
Sbjct: 309 KLRAGLRTAAPARAADFSIFELPDLASLEKMGG 341


>gi|257870252|ref|ZP_05649905.1| methyltransferase [Enterococcus gallinarum EG2]
 gi|257804416|gb|EEV33238.1| methyltransferase [Enterococcus gallinarum EG2]
          Length = 319

 Score =  404 bits (1040), Expect = e-111,   Method: Composition-based stats.
 Identities = 112/312 (35%), Positives = 175/312 (56%), Gaps = 13/312 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H  V+L++ +  L   P  + +D T G  G+S           ++ A D+D  A+   +E
Sbjct: 6   HYTVMLKETVDGLAIRPDGIYVDCTLGGAGHSEYLLSQLSEEGHLYAFDQDQKAIDHAKE 65

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y  K   +  ++ F  L++ +  +GVD   GV++DLGVSS Q+D  +RGFS+ +  
Sbjct: 66  RLAPYVAKGMVTFIKSNFRYLKEALQQQGVDQVSGVLYDLGVSSPQLDEAERGFSYHQDA 125

Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  S  ++A +VVNQ +   L +I    GEEK + +IA  I + R + P +TT +
Sbjct: 126 PLDMRMDQSAALTAYEVVNQFDYHQLVKIFFRYGEEKFSKQIAREIERTRANKPIETTGE 185

Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I+  +   ++    HPA R FQA+RI VN+E+  + + L  A   L+  G + V++
Sbjct: 186 LVEIIKTAIPAPARRKGGHPAKRIFQAIRIAVNDELGVIEESLEQAIDLLEKNGRISVIT 245

Query: 250 FHSLEDRLVKKFFASRS--GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           FHSLEDR+VK  F + S    V     +IP    P V + IT+K ++P++E+V+ N RSR
Sbjct: 246 FHSLEDRIVKSTFKAYSTPKDVPPGLPIIPEEFQP-VLKLITRKPLLPSEEEVSENNRSR 304

Query: 308 SAKLRAGMRTVE 319
           SAKLR   +  E
Sbjct: 305 SAKLRIAEKMKE 316


>gi|16078578|ref|NP_389397.1| S-adenosyl-methyltransferase MraW [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221309385|ref|ZP_03591232.1| S-adenosyl-methyltransferase MraW [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221313712|ref|ZP_03595517.1| S-adenosyl-methyltransferase MraW [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221318634|ref|ZP_03599928.1| S-adenosyl-methyltransferase MraW [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221322908|ref|ZP_03604202.1| S-adenosyl-methyltransferase MraW [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|1730600|sp|Q07876|RSMH_BACSU RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|1122760|emb|CAA92525.1| unknown [Bacillus subtilis subsp. subtilis str. 168]
 gi|2633885|emb|CAB13387.1| S-adenosyl-dependent methyltransferase active on membrane-located
           substrates [Bacillus subtilis subsp. subtilis str. 168]
          Length = 311

 Score =  404 bits (1039), Expect = e-111,   Method: Composition-based stats.
 Identities = 116/309 (37%), Positives = 172/309 (55%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H  VLL + +  LN  P    +D T G  G+S    +       +IA D+D  A+  
Sbjct: 1   MFQHKTVLLRETVDGLNIKPDGTYVDCTLGGAGHSTYLLQQLSEKGRLIAFDQDDTALQH 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E + DYK Q  L ++ F  L++Y+ ++GV   DG++FDLGVSS Q+D  +RGFS+   
Sbjct: 61  AKEVLSDYKGQLILIKSNFRYLKEYLNEQGVTEVDGILFDLGVSSPQLDTPERGFSYHHD 120

Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM  S  +SA +VVN+   +DL RI    GEEK + +IA  I + R  +P QTT 
Sbjct: 121 APLDMRMDQSATLSAKEVVNEWRYEDLVRIFFKYGEEKFSKQIARKIEEARMKSPIQTTG 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L  LI+  +   ++ +  HPA R FQA+RI VN+E+    + L  A + LK GG + V+
Sbjct: 181 QLVDLIKDAIPAPARRSGGHPAKRVFQAIRIAVNDELRVFEEALEQAIEVLKPGGRVSVI 240

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F  +S    +     +         + IT+K +  +QE++  N R+R
Sbjct: 241 TFHSLEDRICKTTFKEKSSLPELPPGLPVIPEEFEPELKLITRKPITASQEELEENNRAR 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRIAEK 309


>gi|323489493|ref|ZP_08094720.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Planococcus donghaensis MPA1U2]
 gi|323396624|gb|EGA89443.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Planococcus donghaensis MPA1U2]
          Length = 312

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 110/312 (35%), Positives = 169/312 (54%), Gaps = 9/312 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSC 73
           + +H  VLL + +  LN  P  + +D T G  G+S           ++   D+D  A++ 
Sbjct: 1   MFNHTTVLLHETVDGLNVRPDGIYVDCTLGGAGHSEYLVQQLSDQGHLYCFDQDATAIAH 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E +++Y  + +   A F  L++ +   GV   DG+++DLGVSS Q+D  +RGFS+   
Sbjct: 61  AKEKLQEYLHRITFIHANFKFLKEELEMHGVEKVDGILYDLGVSSPQLDTPERGFSYHND 120

Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM  S  +SA  VVN+ + +DL RI    GEEK + +IA  I   R+  P +TT 
Sbjct: 121 APLDMRMDQSAELSAYHVVNEWSFEDLVRIFYRYGEEKFSKQIARKIEAAREKQPIETTG 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L   I+  +  F++    HPA R FQA+RI VN+E+      L+ A   L  GG + V+
Sbjct: 181 QLVECIKDGIPAFARRKGGHPAKRVFQAIRIAVNDELGAAETSLQDAVSLLAIGGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K  F   S    +     +  +    + + IT+K ++P++E++  N RSR
Sbjct: 241 TFHSLEDRLCKAIFKEASSLPELPPNLPVIPDGMEPILKLITRKPILPSEEELEHNNRSR 300

Query: 308 SAKLRAGMRTVE 319
           SAKLR   +  E
Sbjct: 301 SAKLRIAEKINE 312


>gi|227822659|ref|YP_002826631.1| S-adenosyl-methyltransferase MraW [Sinorhizobium fredii NGR234]
 gi|262825425|sp|C3MEN7|RSMH_RHISN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|227341660|gb|ACP25878.1| S-adenosyl-methyltransferase MraW [Sinorhizobium fredii NGR234]
          Length = 341

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 179/323 (55%), Positives = 233/323 (72%), Gaps = 1/323 (0%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+PV+L +V+A L PAPGKVILD TFGAGGY+ +    G++VIALDRDP A++ GQ  + 
Sbjct: 19  HIPVMLAEVLAALEPAPGKVILDGTFGAGGYTSAILDAGADVIALDRDPTAIAAGQPMVA 78

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
               +  L  + FS+L D+VP+ G+DG+VFD+GVSSMQID  +RGFSFQK GPLDMRMS 
Sbjct: 79  AAGGRLRLIHSRFSELADHVPEGGLDGIVFDIGVSSMQIDEAERGFSFQKKGPLDMRMSA 138

Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199
           +G+SA+DVVN+A V DL RI G LGEEKQA RIA AI KRR  APF+TT++L++LI+   
Sbjct: 139 AGVSAADVVNRAKVSDLIRIFGFLGEEKQAGRIARAIEKRRAEAPFETTRNLANLIETVT 198

Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259
                ++IHPATR FQALRIFVN+E+ ELA  L +AE+ LK GG L+VV+FHSLEDR+VK
Sbjct: 199 PRKAKDKIHPATRVFQALRIFVNDELGELANALFAAERVLKPGGRLVVVTFHSLEDRIVK 258

Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319
            FF  RSGK    RH+    A  A F  + K +V  ++++ + N R+RSAKLRAG+RT  
Sbjct: 259 TFFQDRSGKAGGSRHLPLVTARDATFTPVGKPMVAASEDEASRNPRARSAKLRAGVRTPA 318

Query: 320 RSIEDD-SFVHLPRLPTLSQFRG 341
            S  +D S  +LP L +L++  G
Sbjct: 319 ASPGNDLSIFNLPELASLARLGG 341


>gi|289578681|ref|YP_003477308.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter italicus Ab9]
 gi|289528394|gb|ADD02746.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter italicus Ab9]
          Length = 308

 Score =  403 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 116/304 (38%), Positives = 173/304 (56%), Gaps = 8/304 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77
           H  VLL++ I  LN  P  + +D T G GG+S    K      +IA+DRD  A+  G+E 
Sbjct: 5   HKSVLLKETIEYLNIKPEGIYVDGTLGGGGHSEEILKRLTKGKLIAIDRDLDAIKAGKER 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +++YK         F  +++ +   GVD   G++ DLGVSS Q++  +RGFS+ K  PLD
Sbjct: 65  LKNYK-NVKYINNNFKNIKEILKSLGVDKVDGIILDLGVSSFQLEEVERGFSYMKDAPLD 123

Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM  +   SA DVVN+ + ++L +++   GEEK ASRIA  IVK R+    +TT  L  
Sbjct: 124 MRMDKNSTFSAYDVVNKYSQQELEKVIREYGEEKWASRIAKFIVKEREKGEIKTTFQLVE 183

Query: 194 LIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +I+  +   ++    HPA R+FQA+RI VN E++ L + +    + L+  G + +++FHS
Sbjct: 184 IIKNAIPASARRKGPHPAKRTFQAIRIEVNEELKGLGKAIEDMVEVLRGKGRIAIITFHS 243

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK  F           +M        V + ITKK VVP++E++  N RSRSAKLR
Sbjct: 244 LEDRIVKNTFKKLENPCTCPPNMPCICGKKPVVKIITKKPVVPSKEEIETNSRSRSAKLR 303

Query: 313 AGMR 316
              +
Sbjct: 304 VAEK 307


>gi|159185048|ref|NP_355067.2| S-adenosyl-methyltransferase MraW [Agrobacterium tumefaciens str.
           C58]
 gi|20138929|sp|P58745|RSMH_AGRT5 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|159140322|gb|AAK87852.2| S-adenosyl methionine-dependent methytransferase [Agrobacterium
           tumefaciens str. C58]
          Length = 341

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 182/333 (54%), Positives = 234/333 (70%), Gaps = 1/333 (0%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPF 69
           SS        H+PVLL +VIA L PAPGK+ILD TFGAGGY+++    G+NVIALDRDP 
Sbjct: 9   SSDADGGPQRHIPVLLREVIAALEPAPGKIILDGTFGAGGYTQAILDQGANVIALDRDPT 68

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
           A++ G+  +     + SL Q+ FS L  + P+ G+DGVV D+GVSSMQID  +RGFSFQK
Sbjct: 69  AIAGGEAMVVANGGRLSLIQSQFSDLAKHAPEDGLDGVVLDIGVSSMQIDEAERGFSFQK 128

Query: 130 SGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
           +GPLDMRMS SG+SA+DVVN+A V DL RI G LGEEKQ  RIA AI K+R   PF+TT+
Sbjct: 129 NGPLDMRMSASGVSAADVVNRAKVGDLIRIFGFLGEEKQPGRIARAIEKKRAEEPFRTTR 188

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           DL+ LI+        ++IHPATR FQALR+FVN+E+ ELAQ L +AE++LK GG L+VV+
Sbjct: 189 DLAGLIEIVTPRKAKDKIHPATRVFQALRVFVNDELGELAQALFAAERSLKPGGRLVVVT 248

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDR+VKKFF+ RSGK    RH+      PA+F++I K ++  + E+   N R+RSA
Sbjct: 249 FHSLEDRIVKKFFSDRSGKAAGSRHLPMVEDKPAIFENIGKPMIAASDEEAELNPRARSA 308

Query: 310 KLRAGMRTVERSI-EDDSFVHLPRLPTLSQFRG 341
           KLRAG+RT   +   D S   LP L +L +  G
Sbjct: 309 KLRAGLRTTAPARAADFSIFELPDLASLEKMGG 341


>gi|329924124|ref|ZP_08279357.1| S-adenosyl-methyltransferase MraW [Paenibacillus sp. HGF5]
 gi|328940856|gb|EGG37166.1| S-adenosyl-methyltransferase MraW [Paenibacillus sp. HGF5]
          Length = 317

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 111/316 (35%), Positives = 172/316 (54%), Gaps = 16/316 (5%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSC 73
           +  H+ VL ++    L   P  + +D T G  G+S            +IALD+D +A++ 
Sbjct: 1   MFHHITVLKQEATEGLRIKPDGIYVDCTLGGAGHSSLIASQLSSEGRLIALDQDDWALNN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVP---------DKGVDGVVFDLGVSSMQIDCGDRG 124
            +E M+ Y ++ +L +  F  L++ +             VDG++FDLGVSS Q D G+RG
Sbjct: 61  AREAMKPYADRITLVKTNFRDLEEVLRSEVGAGENGQPQVDGILFDLGVSSPQFDEGERG 120

Query: 125 FSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           FS+    PLDMRM  S  ++A+ +VN+   +++ RIL   GEEK + RIA  IV+RR  +
Sbjct: 121 FSYNHDAPLDMRMDQSAELTAAKIVNEWPEQEIARILYQYGEEKFSRRIAKVIVERRAQS 180

Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           P QTT +L  +I++ +  + +    HPA RSFQA RI VN+E+      L  A + L  G
Sbjct: 181 PIQTTGELVEMIKEGIPAAARRTGGHPAKRSFQAFRIAVNDELGAFEDALHQAVRCLAPG 240

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDV 300
           G + V++FHSLEDR+ K+ F S   K        M          + + +K ++P+ E++
Sbjct: 241 GRVSVITFHSLEDRICKQIFNSYIPKCTCPPDFPMCVCGGGQGDLKLVNRKPLIPSAEEI 300

Query: 301 AFNRRSRSAKLRAGMR 316
             N R+RSAKLR   +
Sbjct: 301 ESNPRARSAKLRIAEK 316


>gi|308173479|ref|YP_003920184.1| S-adenosyl-dependent methyltransferase [Bacillus amyloliquefaciens
           DSM 7]
 gi|307606343|emb|CBI42714.1| S-adenosyl-dependent methyltransferase active on membrane-located
           substrates [Bacillus amyloliquefaciens DSM 7]
 gi|328553591|gb|AEB24083.1| 16S rRNA m(4)C1402 methyltranserfase [Bacillus amyloliquefaciens
           TA208]
 gi|328911615|gb|AEB63211.1| S-adenosyl-dependent methyltransferase active on membrane-located
           substrates [Bacillus amyloliquefaciens LL3]
          Length = 311

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 112/309 (36%), Positives = 173/309 (55%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H  VLL + +  LN  P    +D T G  G+S    +       +IA D+D  A+  
Sbjct: 1   MFQHKTVLLRETVDGLNIKPDGTYVDCTLGGAGHSTYLLQQLSEKGRLIAFDQDDTALEN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            ++T+ +YK Q  L ++ F  L++ + + G   VDG++FDLGVSS Q+D  +RGFS+   
Sbjct: 61  AKQTLSEYKGQLILVKSNFRYLKECLHEHGITSVDGILFDLGVSSPQLDTPERGFSYHHD 120

Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM  S  ++A +VVN+   +DL RI    GEEK + +IA  I + R+ +P QTT 
Sbjct: 121 APLDMRMDQSAALTAKEVVNEWRYEDLVRIFFKYGEEKFSKQIARKIEEAREKSPIQTTG 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L  LI+  +   ++ +  HPA R FQA+RI VN+E++   + L  A + LK GG + V+
Sbjct: 181 QLVDLIKDAIPAPARRSGGHPAKRVFQAIRIAVNDELQVFEEALLQAIEVLKPGGRVSVI 240

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F  +S    +     +         + IT+K +  ++E++  N R+R
Sbjct: 241 TFHSLEDRMCKTTFKEKSSLPELPPGLPVIPEEFEPELKLITRKPITASKEELEENNRAR 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRIAEK 309


>gi|118444716|ref|YP_878007.1| S-adenosyl-methyltransferase MraW [Clostridium novyi NT]
 gi|263446115|sp|A0Q055|RSMH_CLONN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|118135172|gb|ABK62216.1| S-adenosyl-methyltransferase MraW [Clostridium novyi NT]
          Length = 309

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 112/307 (36%), Positives = 165/307 (53%), Gaps = 9/307 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
           +HVPVLLE+ I  LN     + +D T G  G+S    K       +I +D+D  A+   +
Sbjct: 4   NHVPVLLEETIDSLNIKEDGIYVDCTLGGAGHSSEILKKLSKKGRLIGIDQDINAIKAAK 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E ++DY E  +     F  L   + +     VDG++ DLGVSS Q+D  +RGFS+ K   
Sbjct: 64  ERLKDY-ENVTYVHNNFYNLASILDELNVDKVDGILMDLGVSSYQLDTPERGFSYMKDAM 122

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+  +GISA DVVN  +  DL RI+   GEE+ + +IA AIVK R   P +TT +L
Sbjct: 123 LDMRMNTENGISAYDVVNGYSEDDLFRIIKDYGEERFSRKIAKAIVKERNEKPVETTLEL 182

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             +I+  +        HPA ++FQA+RI VN+E+E L + +      L   G + V++FH
Sbjct: 183 VKIIKDVIPMKFQQGGHPAKKTFQAIRIEVNHELEILNKTVEDGVNYLNPNGRISVITFH 242

Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR++K  F          +   I       V + +T+K + P + +   N RSRS+K
Sbjct: 243 SLEDRIIKTKFKELENPCTCPKEFPICVCGKKPVVKVVTRKPIEPNEFERENNSRSRSSK 302

Query: 311 LRAGMRT 317
           LR   + 
Sbjct: 303 LRVAQKI 309


>gi|158320404|ref|YP_001512911.1| S-adenosyl-methyltransferase MraW [Alkaliphilus oremlandii OhILAs]
 gi|263446681|sp|A8MH28|RSMH_ALKOO RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|158140603|gb|ABW18915.1| S-adenosyl-methyltransferase MraW [Alkaliphilus oremlandii OhILAs]
          Length = 311

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 117/308 (37%), Positives = 170/308 (55%), Gaps = 9/308 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
            HV VLLE+ I  LN     + +D T G  G+S    K  S+   +I +D+D  A+    
Sbjct: 4   KHVSVLLEECIENLNIKENGIYVDGTLGGAGHSSEIAKRLSDKGLLIGIDQDENAIKAAG 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E +   KE+  L +  FS +   + +    G+DG++ DLGVSS Q+D  DRGFS+    P
Sbjct: 64  EKLTPMKERIKLVRDNFSNIDAILQNLEIDGIDGILLDLGVSSHQLDEADRGFSYMHDAP 123

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM     +SA +VVN    KDL  I+   GEEK A RIA+ IV  R+  P  TT  L
Sbjct: 124 LDMRMDTRQAVSAMEVVNSYTEKDLENIIKNYGEEKWAKRIANFIVDFRKEEPITTTHQL 183

Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I++ +   ++ +  HPA R+FQA+RI VN E+E + + +  A + L  GG + +++F
Sbjct: 184 VDVIKRAIPKGARIDGPHPAKRTFQAIRIEVNGELEIINKTIDDAVRNLNPGGRICIITF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  F   S   +      I         + IT+K +VPT+E++  N R+RSA
Sbjct: 244 HSLEDRIVKNAFRDLSNPCICPPEFPICRCDRKPAVKIITRKPIVPTEEELELNPRARSA 303

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 304 KLRVAEKI 311


>gi|321315277|ref|YP_004207564.1| 16S rRNA m(4)C1402 methyltranserfase [Bacillus subtilis BSn5]
 gi|320021551|gb|ADV96537.1| 16S rRNA m(4)C1402 methyltranserfase [Bacillus subtilis BSn5]
          Length = 311

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 114/309 (36%), Positives = 171/309 (55%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H  VLL + +  LN  P    +D T G  G+S    +       +IA D+D  A+  
Sbjct: 1   MFQHKTVLLRETVDGLNIKPDGTYVDCTLGGAGHSTYLLQQLSEKGRLIAFDQDDTALQH 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E + DYK Q  L ++ F  L++ + ++G   VDG++FDLGVSS Q+D  +RGFS+   
Sbjct: 61  AKEVLSDYKGQLILIKSNFRYLKECLNEQGITEVDGILFDLGVSSPQLDTPERGFSYHHD 120

Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM  S  ++A +VVN+   +DL RI    GEEK + +IA  I + R  +P QTT 
Sbjct: 121 APLDMRMDQSATLTAKEVVNEWRYEDLVRIFFKYGEEKFSKQIARKIEEARMKSPIQTTG 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L  LI+  +   ++ +  HPA R FQA+RI VN+E+    + L  A + LK GG + V+
Sbjct: 181 QLVDLIKDAIPAPARRSGGHPAKRVFQAIRIAVNDELRVFEEALEQAIEVLKPGGRVSVI 240

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F  +S    +     +         + IT+K +  +QE++  N R+R
Sbjct: 241 TFHSLEDRICKTTFKEKSSLPELPPGLPVIPEEFEPELKLITRKPITASQEELEENNRAR 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRIAEK 309


>gi|297544901|ref|YP_003677203.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296842676|gb|ADH61192.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 308

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 115/304 (37%), Positives = 172/304 (56%), Gaps = 8/304 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77
           H  VLL++ I  LN  P  + +D T G GG+S    K      +IA+DRD  A+   +E 
Sbjct: 5   HKSVLLKETIEYLNIKPEGIYVDGTLGGGGHSEQILKRLTKGKLIAIDRDLDAIKASKER 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +++YK         F  +++ +   GVD   G++ DLGVSS Q++  +RGFS+ K  PLD
Sbjct: 65  LKNYK-NVKYINNNFKNIKEILKSLGVDKVDGIILDLGVSSFQLEEVERGFSYMKDAPLD 123

Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM  +   SA DVVN+ + ++L +++   GEEK ASRIA  IVK R+    +TT  L  
Sbjct: 124 MRMDKNSTFSAYDVVNKYSQQELEKVIREYGEEKWASRIAKFIVKEREKGEIKTTFQLVE 183

Query: 194 LIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +I+  +   ++    HPA R+FQA+RI VN E++ L + +    + L+  G + +++FHS
Sbjct: 184 IIKNAIPASARRKGPHPAKRTFQAIRIEVNEELKGLGKAIEDMVEVLRGKGRIAIITFHS 243

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK  F           +M        V + ITKK VVP++E++  N RSRSAKLR
Sbjct: 244 LEDRIVKNTFKKLENPCTCPPNMPCICGKKPVVKIITKKPVVPSKEEIETNSRSRSAKLR 303

Query: 313 AGMR 316
              +
Sbjct: 304 VAEK 307


>gi|326791423|ref|YP_004309244.1| S-adenosyl-methyltransferase MraW [Clostridium lentocellum DSM
           5427]
 gi|326542187|gb|ADZ84046.1| S-adenosyl-methyltransferase MraW [Clostridium lentocellum DSM
           5427]
          Length = 311

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 112/307 (36%), Positives = 173/307 (56%), Gaps = 9/307 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQ 75
           +HV VLL + I  L   P    +D T G  G++R          + I +D+D  A++   
Sbjct: 4   EHVSVLLNECIEGLAIKPNGTYVDGTLGGAGHARVVCNYLTEEGHFIGIDQDKNALAVST 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E ++D K + S+  + F ++ + +     +GVDG++ DLGVSS Q+D   RGFS+    P
Sbjct: 64  ERLKDVKPKVSIVNSNFEKVAEVLEVLGIEGVDGMLIDLGVSSHQLDEPSRGFSYMHDAP 123

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM   G  +A +VVN    ++L RI+   GEEK A RIA  IV+ R+  P +TT +L
Sbjct: 124 LDMRMDQDGAYTAYEVVNDMAEEELFRIIKEYGEEKWAKRIAQFIVEERKQKPIETTYEL 183

Query: 192 SSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+K +   ++ +  HPA R+FQA+RI VN E+E +   +++    L +GG L +++F
Sbjct: 184 VEVIKKAIPQGARKDGPHPAKRTFQAIRIAVNRELEIIEPTIKAIVDKLNSGGRLCIITF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  F +         H  I       + + IT+K ++P+ E++  N RSRSA
Sbjct: 244 HSLEDRIVKHAFRNLENPCTCAPHIPICVCGKKPLVKVITRKPILPSDEEIEINPRSRSA 303

Query: 310 KLRAGMR 316
           KLR   +
Sbjct: 304 KLRIIEK 310


>gi|167636587|ref|ZP_02394881.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0442]
 gi|170688833|ref|ZP_02880036.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0465]
 gi|254683371|ref|ZP_05147231.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str.
           CNEVA-9066]
 gi|254743854|ref|ZP_05201537.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. Kruger
           B]
 gi|167528010|gb|EDR90816.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0442]
 gi|170667188|gb|EDT17948.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0465]
          Length = 310

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 112/309 (36%), Positives = 171/309 (55%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73
           + +HV VLL++ +  L+  P    +D T G GG+S         G  +IA D+D  A+  
Sbjct: 1   MFNHVTVLLKETVDGLDIKPDGTYVDCTLGGGGHSSYLLSQLTEGGRLIAFDQDEIAIQN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E    Y EQF   ++ F  L + + + G   VDG++FDLGVSS Q+D  +RGFS+   
Sbjct: 61  AKEKFSSYGEQFITVKSNFRYLSEKLQELGITEVDGILFDLGVSSPQLDTPERGFSYHHD 120

Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM     ++A DVVN  + + L RI    GEEK + +IA  I   R++   +TT 
Sbjct: 121 APLDMRMDQDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTG 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  LI++ +   ++    HPA R FQA+RI VN+E++   + L SA + +K GG + V+
Sbjct: 181 ELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRVSVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F   S    +     I  +      + IT+K ++P+  ++  N R+R
Sbjct: 241 TFHSLEDRICKTTFKRNSTTPQLPPGLPITPDEFKPKLKLITRKPILPSDIELEENNRAR 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRIAEK 309


>gi|218235035|ref|YP_002368718.1| S-adenosyl-methyltransferase MraW [Bacillus cereus B4264]
 gi|263446873|sp|B7H6Q4|RSMH_BACC4 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|218162992|gb|ACK62984.1| S-adenosyl-methyltransferase MraW [Bacillus cereus B4264]
          Length = 310

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 113/309 (36%), Positives = 170/309 (55%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73
           +  HV VLL++ +  LN  P    +D T G GG+S         G  +IA D+D  A+  
Sbjct: 1   MFKHVTVLLKETVDGLNIKPDGTYVDCTLGGGGHSSYLLSQLTEGGKLIAFDQDEIAIQN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E    Y EQF   ++ F  L + + + G   VDG++FDLGVSS Q+D  +RGFS+   
Sbjct: 61  AKEKFSSYGEQFITVKSNFRYLAEKLQEIGITEVDGILFDLGVSSPQLDTPERGFSYHHD 120

Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM     ++A DVVN  + + L RI    GEEK + +IA  I   R++   +TT 
Sbjct: 121 APLDMRMDQDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTG 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  LI++ +   ++    HPA R FQA+RI VN+E++   + L SA + +K GG + V+
Sbjct: 181 ELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRVSVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F   S    +     I  +      + IT+K ++P+  ++  N R+R
Sbjct: 241 TFHSLEDRICKTTFKRNSTTPQLPPGLPIIPDEFKPKLKLITRKPILPSDIELEENNRAR 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRIAEK 309


>gi|42783012|ref|NP_980259.1| S-adenosyl-methyltransferase MraW [Bacillus cereus ATCC 10987]
 gi|47565791|ref|ZP_00236830.1| S-adenosyl-methyltransferase MraW [Bacillus cereus G9241]
 gi|222097364|ref|YP_002531421.1| s-adenosyl-methyltransferase mraw [Bacillus cereus Q1]
 gi|228987063|ref|ZP_04147188.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|229157497|ref|ZP_04285574.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus ATCC 4342]
 gi|88911698|sp|P62468|RSMH_BACC1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263447274|sp|B9IVZ5|RSMH_BACCQ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|42738939|gb|AAS42867.1| S-adenosyl-methyltransferase MraW [Bacillus cereus ATCC 10987]
 gi|47557071|gb|EAL15400.1| S-adenosyl-methyltransferase MraW [Bacillus cereus G9241]
 gi|221241422|gb|ACM14132.1| S-adenosyl-methyltransferase MraW [Bacillus cereus Q1]
 gi|228625947|gb|EEK82697.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus ATCC 4342]
 gi|228772657|gb|EEM21098.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|324327818|gb|ADY23078.1| 16S rRNA m(4)C1402 methyltranserfase [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 310

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 113/309 (36%), Positives = 172/309 (55%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73
           + +HV VLL++ +  L+  PG   +D T G GG+S         G  +IA D+D  A+  
Sbjct: 1   MFNHVTVLLKETVDGLDIKPGGTYVDCTLGGGGHSSYLLSQLTEGGRLIAFDQDEIAIQN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E    Y EQF   ++ F  L + + + G   VDG++FDLGVSS Q+D  +RGFS+   
Sbjct: 61  AKEKFSSYGEQFITVKSNFRYLSEKLQELGITEVDGILFDLGVSSPQLDTPERGFSYHHD 120

Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM     ++A DVVN  + + L RI    GEEK + +IA  I   R++   +TT 
Sbjct: 121 APLDMRMDQDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTG 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  LI++ +   ++    HPA R FQA+RI VN+E++   + L SA + +K GG + V+
Sbjct: 181 ELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRVSVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F   S    +     I  +      + IT+K ++P+  ++  N R+R
Sbjct: 241 TFHSLEDRICKTTFKRNSTTPQLPPGLPIIPDEFKPKLKLITRKPILPSDIELEENNRAR 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRIAEK 309


>gi|291484065|dbj|BAI85140.1| S-adenosyl-methyltransferase MraW [Bacillus subtilis subsp. natto
           BEST195]
          Length = 311

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 115/309 (37%), Positives = 171/309 (55%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H  VLL + +  LN  P    +D T G  G+S    +       +IA D+D  A+  
Sbjct: 1   MFQHKTVLLRETVDGLNIKPDGTYVDCTLGGAGHSTYLLQQLSEKGRLIAFDQDDTALQH 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E + DYK Q  L ++ F  L++ + ++G   VDG++FDLGVSS Q+D  +RGFS+   
Sbjct: 61  AKEVLSDYKGQLILIKSNFRYLKECLNEQGITEVDGILFDLGVSSPQLDTPERGFSYHHD 120

Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM  S  +SA +VVN+   +DL RI    GEEK + +IA  I + R  +P QTT 
Sbjct: 121 APLDMRMDQSATLSAKEVVNEWRYEDLVRIFFKYGEEKFSKQIARKIEEARMKSPIQTTG 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L  LI+  +   ++ +  HPA R FQA+RI VN+E+    + L  A + LK GG + V+
Sbjct: 181 QLVDLIKDAIPAPARRSGGHPAKRVFQAIRIAVNDELRVFEEALEQAIEVLKPGGRVSVI 240

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F  +S    +     +         + IT+K +  +QE++  N R+R
Sbjct: 241 TFHSLEDRICKTTFKEKSSLPELPPGLPVIPEEFEPELKLITRKPITASQEELEENNRAR 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRIAEK 309


>gi|229092966|ref|ZP_04224098.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus Rock3-42]
 gi|228690420|gb|EEL44205.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus Rock3-42]
          Length = 310

 Score =  401 bits (1032), Expect = e-110,   Method: Composition-based stats.
 Identities = 112/309 (36%), Positives = 171/309 (55%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73
           + +HV VLL++ +  L+  P    +D T G GG+S         G  +IA D+D  A+  
Sbjct: 1   MFNHVTVLLKETVDGLDIKPDGTYVDCTLGGGGHSSYLLSQLTEGGRLIAFDQDEIAIQN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E    Y EQF   ++ F  L + + + G   VDG++FDLGVSS Q+D  +RGFS+   
Sbjct: 61  AKEKFSSYGEQFITVKSNFRYLSEKLQELGITEVDGILFDLGVSSPQLDTPERGFSYHHD 120

Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM     ++A DVVN  + + L RI    GEEK + +IA  I   R++   +TT 
Sbjct: 121 APLDMRMDQDAPLTAYDVVNNWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTG 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  LI++ +   ++    HPA R FQA+RI VN+E++   + L SA + +K GG + V+
Sbjct: 181 ELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRVSVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F   S    +     I  +      + IT+K ++P+  ++  N R+R
Sbjct: 241 TFHSLEDRICKTTFKRNSTTPQLPPGLPIIPDEFKPKLKLITRKPILPSDIELEENNRAR 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRIAEK 309


>gi|206976726|ref|ZP_03237630.1| S-adenosyl-methyltransferase MraW [Bacillus cereus H3081.97]
 gi|217961340|ref|YP_002339908.1| S-adenosyl-methyltransferase MraW [Bacillus cereus AH187]
 gi|229140568|ref|ZP_04269123.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus BDRD-ST26]
 gi|229198030|ref|ZP_04324744.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus m1293]
 gi|263447288|sp|B7HM39|RSMH_BACC7 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|206745036|gb|EDZ56439.1| S-adenosyl-methyltransferase MraW [Bacillus cereus H3081.97]
 gi|217067703|gb|ACJ81953.1| S-adenosyl-methyltransferase MraW [Bacillus cereus AH187]
 gi|228585509|gb|EEK43613.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus m1293]
 gi|228643129|gb|EEK99405.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus BDRD-ST26]
          Length = 310

 Score =  401 bits (1032), Expect = e-110,   Method: Composition-based stats.
 Identities = 113/309 (36%), Positives = 172/309 (55%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73
           + +HV VLL++ +  L+  PG   +D T G GG+S         G  +IA D+D  A+  
Sbjct: 1   MFNHVTVLLKETVDGLDIKPGGTYVDCTLGGGGHSSYLLSQLTEGGRLIAFDQDEIAIQN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E    Y EQF   ++ F  L + + + G   VDG++FDLGVSS Q+D  +RGFS+   
Sbjct: 61  AKEKFSSYGEQFITVRSNFRYLSEKLQELGITEVDGILFDLGVSSPQLDTPERGFSYHHD 120

Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM     ++A DVVN  + + L RI    GEEK + +IA  I   R++   +TT 
Sbjct: 121 APLDMRMDQDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTG 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  LI++ +   ++    HPA R FQA+RI VN+E++   + L SA + +K GG + V+
Sbjct: 181 ELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRVSVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F   S    +     I  +      + IT+K ++P+  ++  N R+R
Sbjct: 241 TFHSLEDRICKTTFKRNSTTPQLPPGLPIIPDEFKPKLKLITRKPILPSDIELEENNRAR 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRIAEK 309


>gi|153854700|ref|ZP_01995950.1| hypothetical protein DORLON_01948 [Dorea longicatena DSM 13814]
 gi|149752804|gb|EDM62735.1| hypothetical protein DORLON_01948 [Dorea longicatena DSM 13814]
          Length = 311

 Score =  401 bits (1032), Expect = e-110,   Method: Composition-based stats.
 Identities = 104/307 (33%), Positives = 171/307 (55%), Gaps = 9/307 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
           +H  VLL + I  LN  P  + +D T G GG++   C+       +I +D+D  A+    
Sbjct: 4   EHKSVLLNETIEGLNIKPDGIYVDGTLGGGGHAYEVCRRLGEKGSIIGIDQDEAAIEAAS 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             ++D+ E+ ++ ++ +  ++  + + G   VDG+V DLGVSS Q+D  +RGFS+++  P
Sbjct: 64  VRLKDFGEKVTIIRSNYCDMKSKLHELGIDKVDGIVLDLGVSSYQLDTAERGFSYREDAP 123

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM     ++A D+VN  +  DL R++   GE+K A  IA  IV  R + P +TT  L
Sbjct: 124 LDMRMDRRQKMTARDIVNDYSEMDLYRVIRDYGEDKFAKNIAKHIVAARGTNPIETTGQL 183

Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           + +I+ ++    +    HPA R+FQA+RI +N E++ L   L    + L  GG L +++F
Sbjct: 184 TEIIRASIPMKYQKKSGHPAKRTFQAIRIELNRELDVLKNSLDDMIEILNPGGRLCIITF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  F              +      +    +T+K ++P++E++ +N RS+SA
Sbjct: 244 HSLEDRIVKSAFKKNENPCTCPPDFPVCVCGKVSKGCVVTRKPILPSEEELEYNSRSKSA 303

Query: 310 KLRAGMR 316
           KLR   R
Sbjct: 304 KLRIFER 310


>gi|49478448|ref|YP_037980.1| S-adenosyl-methyltransferase MraW [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|54036189|sp|Q6HEP6|RSMH_BACHK RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|49330004|gb|AAT60650.1| S-adenosyl-methyltransferase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 310

 Score =  401 bits (1032), Expect = e-110,   Method: Composition-based stats.
 Identities = 112/309 (36%), Positives = 171/309 (55%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73
           + +HV VLL++ +  L+  P    +D T G GG+S         G  +IA D+D  A+  
Sbjct: 1   MFNHVTVLLKETVDGLDIKPDGTYVDCTLGGGGHSSYLLSQLTEGGRLIAFDQDEIAIQN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E    Y EQF   ++ F  L + + + G   VDG++FDLGVSS Q+D  +RGFS+   
Sbjct: 61  AKEKFSSYGEQFITVKSNFRYLSEKLQELGITEVDGILFDLGVSSPQLDTPERGFSYHHD 120

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM     ++A DVVN  + + L RI    GEEK + +IA  I   R++   +TT 
Sbjct: 121 APLDMRMDQDASLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTG 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  LI++ +   ++    HPA R FQA+RI VN+E++   + L SA + +K GG + V+
Sbjct: 181 ELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRVSVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F   S    +     I  +      + IT+K ++P+  ++  N R+R
Sbjct: 241 TFHSLEDRICKTTFKRNSTTPQLPPGLPIIPDEFKPKLKLITRKPILPSDIELEENNRAR 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRIAEK 309


>gi|168186149|ref|ZP_02620784.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum C str.
           Eklund]
 gi|169295776|gb|EDS77909.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum C str.
           Eklund]
          Length = 309

 Score =  401 bits (1032), Expect = e-110,   Method: Composition-based stats.
 Identities = 111/307 (36%), Positives = 163/307 (53%), Gaps = 9/307 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
           +HVPVLLE+ I  LN     + +D T G  G+S    K       +I +D+D  A+   +
Sbjct: 4   NHVPVLLEETIDSLNIKKDGIYVDCTLGGAGHSSEILKKLSKKGRLIGIDQDINAIKAAK 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             ++ Y E  +     F  L   + +   + VDG++ DLGVSS Q+D  +RGFS+     
Sbjct: 64  NRLKGY-ENITYVHNNFYNLAGILDELNVEKVDGILMDLGVSSYQLDTPERGFSYMNDAM 122

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+  SGISA DVVN  +  DL RI+   GEE+ A +IA AIVK R   P +TT  L
Sbjct: 123 LDMRMNTESGISAYDVVNGYSEDDLFRIIKNYGEERFARKIARAIVKERNEKPIETTLQL 182

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             +I+  +        HPA ++FQA+RI VN+E+E L + +      L   G + V++FH
Sbjct: 183 VKIIRNVIPMKFQQGGHPAKKTFQAIRIEVNHELEILNKTVEDGVNYLNKDGRISVITFH 242

Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR++K  F          +   I       + + IT+K + P++ +   N RSRS+K
Sbjct: 243 SLEDRIIKTKFKELENPCTCPKEFPICVCGKKPIVKVITRKPIEPSEVERENNSRSRSSK 302

Query: 311 LRAGMRT 317
           LR   + 
Sbjct: 303 LRVAQKI 309


>gi|212639664|ref|YP_002316184.1| putative S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [Anoxybacillus flavithermus
           WK1]
 gi|263446761|sp|B7GGJ0|RSMH_ANOFW RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|212561144|gb|ACJ34199.1| Predicted S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [Anoxybacillus flavithermus
           WK1]
          Length = 313

 Score =  401 bits (1032), Expect = e-110,   Method: Composition-based stats.
 Identities = 113/317 (35%), Positives = 172/317 (54%), Gaps = 14/317 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M+S  H     HV VLL++ +  LN       +D T G  G+S            + A D
Sbjct: 1   MTSLFH-----HVTVLLKETVDGLNIKKDGTYVDCTLGGAGHSEYLLSQLSPEGRLFAFD 55

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGD 122
           +D  A+   Q+ +  Y+ QF++ ++ F  L+  +   GV   DG++FDLGVSS Q+D  +
Sbjct: 56  QDDIAIRHAQQRLERYRGQFTIIKSNFRYLKQQLALYGVHEVDGILFDLGVSSPQLDMPE 115

Query: 123 RGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFS+Q   PLDMRM     ++A DVVN    + L +I    GEEK +  IA  I + R+
Sbjct: 116 RGFSYQHEAPLDMRMDREQTLTAYDVVNTWPYEQLVKIFFQYGEEKFSKAIARKIEQTRK 175

Query: 182 SAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
             P +TT +L+ +I++ +   ++    HPA R FQA+RI VN+E+    + +  A   LK
Sbjct: 176 QKPIETTTELAEVIKEAIPAPARRTGGHPAKRVFQAIRIAVNDELRAFEEAIEQAIDLLK 235

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
            GG + V++FHSLEDR+ K  F   S    +     I  + +    + ITKK +VP++E+
Sbjct: 236 PGGRISVITFHSLEDRICKIAFKQASETPHLPPGLPIIPDEYKPKLKIITKKPIVPSEEE 295

Query: 300 VAFNRRSRSAKLRAGMR 316
           +  N R+RSAKLR   +
Sbjct: 296 LQHNHRARSAKLRIAEK 312


>gi|261405657|ref|YP_003241898.1| S-adenosyl-methyltransferase MraW [Paenibacillus sp. Y412MC10]
 gi|261282120|gb|ACX64091.1| S-adenosyl-methyltransferase MraW [Paenibacillus sp. Y412MC10]
          Length = 317

 Score =  401 bits (1032), Expect = e-110,   Method: Composition-based stats.
 Identities = 112/316 (35%), Positives = 172/316 (54%), Gaps = 16/316 (5%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSC 73
           +  H+ VL ++    L   P  + +D T G  G+S            +IALD+D +A++ 
Sbjct: 1   MFHHITVLKQEATEGLRIKPDGIYVDCTLGGAGHSSLIASQLSSEGRLIALDQDDWALNN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVP---------DKGVDGVVFDLGVSSMQIDCGDRG 124
            +E M+ Y ++ SL +  F  L++ +             VDG++FDLGVSS Q D G+RG
Sbjct: 61  AREAMKPYADRISLVKTNFRDLEEVLRREVGAGENGQPQVDGILFDLGVSSPQFDEGERG 120

Query: 125 FSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           FS+    PLDMRM  S  ++A+ +VN+   +++ RIL   GEEK + RIA  IV+RR  +
Sbjct: 121 FSYNHDAPLDMRMDQSAELTAAKIVNEWPEQEIARILYQYGEEKFSRRIAKVIVERRAQS 180

Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           P QTT +L  +I++ +  + +    HPA RSFQA RI VN+E+      L  A + L  G
Sbjct: 181 PIQTTGELVEMIKEGIPAAARRTGGHPAKRSFQAFRIAVNDELGAFEDALHQAVRCLAPG 240

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDV 300
           G + V++FHSLEDR+ K+ F S   K        M          + + +K ++P+ E++
Sbjct: 241 GRISVITFHSLEDRICKQIFNSYIPKCTCPPDFPMCVCGGGQGDLKLVNRKPLIPSAEEI 300

Query: 301 AFNRRSRSAKLRAGMR 316
             N R+RSAKLR   +
Sbjct: 301 ESNPRARSAKLRIAEK 316


>gi|229162854|ref|ZP_04290811.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus R309803]
 gi|228620736|gb|EEK77605.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus R309803]
          Length = 310

 Score =  401 bits (1031), Expect = e-110,   Method: Composition-based stats.
 Identities = 113/309 (36%), Positives = 169/309 (54%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73
           +  HV VLL++ +  L+  PG   +D T G GG+S         G  +IA D+D  A+  
Sbjct: 1   MFKHVTVLLKETVDGLDIKPGGTYVDCTLGGGGHSSYLLSQLTDGGKLIAFDQDEIAIQN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E    Y EQF   ++ F  L + + + G   VDG++FDLGVSS Q+D  +RGFS+   
Sbjct: 61  AKEKFASYGEQFVTVKSNFRYLSEKLQELGIAEVDGILFDLGVSSPQLDTPERGFSYHHD 120

Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM     ++A DVVN  + + L RI    GEEK + +IA  I   R++   +TT 
Sbjct: 121 APLDMRMDQDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTG 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  LI++ +   ++    HPA R FQA+RI VN+E++   + L SA   +K GG + V+
Sbjct: 181 ELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAISMVKPGGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F   S    +     I         + IT+K ++P+  ++  N R+R
Sbjct: 241 TFHSLEDRICKTTFKRNSTTPQLPPGLPIIPEEFKPKLKLITRKPILPSDIELEENNRAR 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRIAEK 309


>gi|296331089|ref|ZP_06873563.1| S-adenosyl-methyltransferase MraW [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305674244|ref|YP_003865916.1| S-adenosyl-dependent methyltransferase active on membrane-located
           substrates [Bacillus subtilis subsp. spizizenii str.
           W23]
 gi|296151733|gb|EFG92608.1| S-adenosyl-methyltransferase MraW [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305412488|gb|ADM37607.1| S-adenosyl-dependent methyltransferase active on membrane-located
           substrates [Bacillus subtilis subsp. spizizenii str.
           W23]
          Length = 311

 Score =  401 bits (1031), Expect = e-110,   Method: Composition-based stats.
 Identities = 114/309 (36%), Positives = 171/309 (55%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H  VLL + +  LN  P    +D T G  G+S    +       +IA D+D  A+  
Sbjct: 1   MFQHKTVLLRETVDGLNIKPDGTYVDCTLGGAGHSTYLLQQLSEKGRLIAFDQDDMALQH 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E + DYK Q  L ++ F  L++ + ++G   VDG++FDLGVSS Q+D  +RGFS+   
Sbjct: 61  AKEALSDYKGQLILIKSNFRYLKECLKEQGITEVDGILFDLGVSSPQLDTPERGFSYHHD 120

Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM  S  ++A +VVN    +DL RI    GEEK + +IA  I + R  +P QTT 
Sbjct: 121 APLDMRMDQSATLTAKEVVNDWRYEDLVRIFFKYGEEKFSKQIARKIEEARIKSPIQTTG 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L  LI+  +   ++ +  HPA R FQA+RI VN+E++   + L  A + LK GG + V+
Sbjct: 181 QLVDLIKDAIPAPARRSGGHPAKRVFQAIRIAVNDELKVFEEALEQAIEVLKPGGRVSVI 240

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F  +S    +     +         + IT+K +  +QE++  N R+R
Sbjct: 241 TFHSLEDRICKSTFKEKSSLPELPPGLPVIPEEFEPELKLITRKPITASQEELEENNRAR 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRIAEK 309


>gi|154685933|ref|YP_001421094.1| S-adenosyl-methyltransferase MraW [Bacillus amyloliquefaciens
           FZB42]
 gi|263446791|sp|A7Z4D7|RSMH_BACA2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|154351784|gb|ABS73863.1| YlxA [Bacillus amyloliquefaciens FZB42]
          Length = 311

 Score =  401 bits (1031), Expect = e-110,   Method: Composition-based stats.
 Identities = 112/309 (36%), Positives = 173/309 (55%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H  VLL + +  LN  P    +D T G  G+S    +       +IA D+D  A+  
Sbjct: 1   MFQHKTVLLRETVDGLNIKPDGTYVDCTLGGAGHSTYLLQQLSEKGRLIAFDQDDTALEN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            ++T+ +YK Q  L ++ F  L++ + + G   VDG++FDLGVSS Q+D  +RGFS+   
Sbjct: 61  AKKTLSEYKGQLILVKSNFRYLKECLHEHGITSVDGILFDLGVSSPQLDTPERGFSYHHD 120

Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM  S  ++A +VVN+   +DL RI    GEEK + +IA  I + R+ +P QTT 
Sbjct: 121 APLDMRMDQSAALTAKEVVNEWRYEDLVRIFFKYGEEKFSKQIARKIEEAREKSPIQTTG 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L  LI+  +   ++ +  HPA R FQA+RI VN+E++   + L  A + LK GG + V+
Sbjct: 181 QLVDLIKDAIPAPARRSGGHPAKRVFQAIRIAVNDELQVFEEALLQAIEVLKPGGRVSVI 240

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F  +S    +     +         + IT+K +  ++E++  N R+R
Sbjct: 241 TFHSLEDRMCKMTFKEKSSLPELPPGLPVIPEEFEPELKLITRKPITASKEELEENNRAR 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRIAEK 309


>gi|30263920|ref|NP_846297.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. Ames]
 gi|47529351|ref|YP_020700.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|52141570|ref|YP_085259.1| S-adenosyl-methyltransferase MraW [Bacillus cereus E33L]
 gi|65321245|ref|ZP_00394204.1| COG0275: Predicted S-adenosylmethionine-dependent methyltransferase
           involved in cell envelope biogenesis [Bacillus anthracis
           str. A2012]
 gi|118479138|ref|YP_896289.1| S-adenosyl-methyltransferase MraW [Bacillus thuringiensis str. Al
           Hakam]
 gi|165872265|ref|ZP_02216902.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0488]
 gi|167641107|ref|ZP_02399362.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0193]
 gi|170709248|ref|ZP_02899669.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0389]
 gi|177655554|ref|ZP_02936964.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0174]
 gi|190566055|ref|ZP_03018974.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis
           Tsiankovskii-I]
 gi|196035938|ref|ZP_03103340.1| S-adenosyl-methyltransferase MraW [Bacillus cereus W]
 gi|196038800|ref|ZP_03106108.1| S-adenosyl-methyltransferase MraW [Bacillus cereus NVH0597-99]
 gi|196045790|ref|ZP_03113019.1| S-adenosyl-methyltransferase MraW [Bacillus cereus 03BB108]
 gi|218905049|ref|YP_002452883.1| S-adenosyl-methyltransferase MraW [Bacillus cereus AH820]
 gi|225865900|ref|YP_002751278.1| S-adenosyl-methyltransferase MraW [Bacillus cereus 03BB102]
 gi|227813172|ref|YP_002813181.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. CDC 684]
 gi|228916556|ref|ZP_04080122.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228928967|ref|ZP_04091999.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228935234|ref|ZP_04098060.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228947638|ref|ZP_04109928.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|229123432|ref|ZP_04252636.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus 95/8201]
 gi|229186159|ref|ZP_04313328.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus BGSC 6E1]
 gi|229603937|ref|YP_002868154.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0248]
 gi|254721453|ref|ZP_05183242.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A1055]
 gi|254735959|ref|ZP_05193665.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. Western
           North America USA6153]
 gi|254754371|ref|ZP_05206406.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. Vollum]
 gi|254756738|ref|ZP_05208767.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str.
           Australia 94]
 gi|301055409|ref|YP_003793620.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis CI]
 gi|33301354|sp|Q81WC3|RSMH_BACAN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|77416580|sp|Q636A8|RSMH_BACCZ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446803|sp|C3P688|RSMH_BACAA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446820|sp|C3L6F3|RSMH_BACAC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446828|sp|A0RHT9|RSMH_BACAH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446838|sp|B7JK06|RSMH_BACC0 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446859|sp|C1EPT2|RSMH_BACC3 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|30258564|gb|AAP27783.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. Ames]
 gi|47504499|gb|AAT33175.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|51975039|gb|AAU16589.1| S-adenosyl-methyltransferase [Bacillus cereus E33L]
 gi|118418363|gb|ABK86782.1| S-adenosyl-methyltransferase [Bacillus thuringiensis str. Al Hakam]
 gi|164711941|gb|EDR17481.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0488]
 gi|167510887|gb|EDR86278.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0193]
 gi|170125855|gb|EDS94761.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0389]
 gi|172080083|gb|EDT65180.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0174]
 gi|190562974|gb|EDV16940.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis
           Tsiankovskii-I]
 gi|195991587|gb|EDX55553.1| S-adenosyl-methyltransferase MraW [Bacillus cereus W]
 gi|196023230|gb|EDX61908.1| S-adenosyl-methyltransferase MraW [Bacillus cereus 03BB108]
 gi|196030523|gb|EDX69122.1| S-adenosyl-methyltransferase MraW [Bacillus cereus NVH0597-99]
 gi|218537984|gb|ACK90382.1| S-adenosyl-methyltransferase MraW [Bacillus cereus AH820]
 gi|225790748|gb|ACO30965.1| S-adenosyl-methyltransferase MraW [Bacillus cereus 03BB102]
 gi|227005932|gb|ACP15675.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. CDC 684]
 gi|228597335|gb|EEK54986.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus BGSC 6E1]
 gi|228660208|gb|EEL15844.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus 95/8201]
 gi|228812158|gb|EEM58489.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228824399|gb|EEM70205.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228830774|gb|EEM76379.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228843135|gb|EEM88217.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|229268345|gb|ACQ49982.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. A0248]
 gi|300377578|gb|ADK06482.1| S-adenosyl-methyltransferase MraW [Bacillus cereus biovar anthracis
           str. CI]
          Length = 310

 Score =  401 bits (1031), Expect = e-110,   Method: Composition-based stats.
 Identities = 112/309 (36%), Positives = 171/309 (55%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73
           + +HV VLL++ +  L+  P    +D T G GG+S         G  +IA D+D  A+  
Sbjct: 1   MFNHVTVLLKETVDGLDIKPDGTYVDCTLGGGGHSSYLLSQLTEGGRLIAFDQDEIAIQN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E    Y EQF   ++ F  L + + + G   VDG++FDLGVSS Q+D  +RGFS+   
Sbjct: 61  AKEKFSSYGEQFITVKSNFRYLSEKLQELGITEVDGILFDLGVSSPQLDTPERGFSYHHD 120

Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM     ++A DVVN  + + L RI    GEEK + +IA  I   R++   +TT 
Sbjct: 121 APLDMRMDQDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTG 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  LI++ +   ++    HPA R FQA+RI VN+E++   + L SA + +K GG + V+
Sbjct: 181 ELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRVSVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F   S    +     I  +      + IT+K ++P+  ++  N R+R
Sbjct: 241 TFHSLEDRICKTTFKRNSTTPQLPPGLPIIPDEFKPKLKLITRKPILPSDIELEENNRAR 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRIAEK 309


>gi|30022007|ref|NP_833638.1| S-adenosyl-methyltransferase MraW [Bacillus cereus ATCC 14579]
 gi|75762006|ref|ZP_00741921.1| S-adenosyl-methyltransferase mraW [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|206971097|ref|ZP_03232048.1| S-adenosyl-methyltransferase MraW [Bacillus cereus AH1134]
 gi|218899072|ref|YP_002447483.1| S-adenosyl-methyltransferase MraW [Bacillus cereus G9842]
 gi|228902424|ref|ZP_04066578.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis IBL 4222]
 gi|228909744|ref|ZP_04073567.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis IBL 200]
 gi|228922671|ref|ZP_04085971.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228941007|ref|ZP_04103565.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228954195|ref|ZP_04116223.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|228960136|ref|ZP_04121800.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228966872|ref|ZP_04127916.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|228973938|ref|ZP_04134513.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228980527|ref|ZP_04140837.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis Bt407]
 gi|229047603|ref|ZP_04193193.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus AH676]
 gi|229071418|ref|ZP_04204640.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus F65185]
 gi|229081171|ref|ZP_04213681.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus Rock4-2]
 gi|229111388|ref|ZP_04240941.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus Rock1-15]
 gi|229129196|ref|ZP_04258169.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus BDRD-Cer4]
 gi|229146490|ref|ZP_04274861.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus BDRD-ST24]
 gi|229152116|ref|ZP_04280311.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus m1550]
 gi|229180194|ref|ZP_04307538.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus 172560W]
 gi|229192088|ref|ZP_04319057.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus ATCC 10876]
 gi|296504412|ref|YP_003666112.1| S-adenosyl-methyltransferase MraW [Bacillus thuringiensis BMB171]
 gi|33301351|sp|Q819P8|RSMH_BACCR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446850|sp|B7IVF3|RSMH_BACC2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|29897563|gb|AAP10839.1| S-adenosyl-methyltransferase mraW [Bacillus cereus ATCC 14579]
 gi|74490508|gb|EAO53809.1| S-adenosyl-methyltransferase mraW [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|206733869|gb|EDZ51040.1| S-adenosyl-methyltransferase MraW [Bacillus cereus AH1134]
 gi|218540802|gb|ACK93196.1| S-adenosyl-methyltransferase MraW [Bacillus cereus G9842]
 gi|228591414|gb|EEK49264.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus ATCC 10876]
 gi|228603403|gb|EEK60880.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus 172560W]
 gi|228631465|gb|EEK88099.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus m1550]
 gi|228637123|gb|EEK93582.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus BDRD-ST24]
 gi|228654433|gb|EEL10298.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus BDRD-Cer4]
 gi|228672164|gb|EEL27455.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus Rock1-15]
 gi|228702215|gb|EEL54691.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus Rock4-2]
 gi|228711709|gb|EEL63662.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus F65185]
 gi|228723850|gb|EEL75205.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus AH676]
 gi|228779347|gb|EEM27604.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis Bt407]
 gi|228785804|gb|EEM33808.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228792971|gb|EEM40529.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|228799652|gb|EEM46605.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228805515|gb|EEM52106.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|228818686|gb|EEM64753.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228837100|gb|EEM82441.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228850033|gb|EEM94864.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis IBL 200]
 gi|228857168|gb|EEN01674.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           thuringiensis IBL 4222]
 gi|296325464|gb|ADH08392.1| S-adenosyl-methyltransferase MraW [Bacillus thuringiensis BMB171]
 gi|326941688|gb|AEA17584.1| S-adenosyl-methyltransferase MraW [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 310

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 112/309 (36%), Positives = 170/309 (55%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73
           +  HV VLL++ +  L+  P    +D T G GG+S         G  +IA D+D  A+  
Sbjct: 1   MFKHVTVLLKETVDGLDIKPDGTYVDCTLGGGGHSSYLLSQLTEGGKLIAFDQDEIAIQN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E    Y EQF   ++ F  L + + + G   VDG++FDLGVSS Q+D  +RGFS+   
Sbjct: 61  AKEKFSSYGEQFITVKSNFRYLAEKLQEIGITEVDGILFDLGVSSPQLDTPERGFSYHHD 120

Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM     ++A DVVN  + + L RI    GEEK + +IA  I   R++   +TT 
Sbjct: 121 APLDMRMDQDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTG 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  LI++ +   ++    HPA R FQA+RI VN+E++   + L SA + +K GG + V+
Sbjct: 181 ELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRVSVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F   S    +     I  +      + IT+K ++P+  ++  N R+R
Sbjct: 241 TFHSLEDRICKTTFKRNSTTPQLPPGLPIIPDEFKPKLKLITRKPILPSDIELEENNRAR 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRIAEK 309


>gi|226948790|ref|YP_002803881.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum A2 str.
           Kyoto]
 gi|263446084|sp|C1FME6|RSMH_CLOBJ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|226843346|gb|ACO86012.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum A2 str.
           Kyoto]
          Length = 309

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 113/307 (36%), Positives = 165/307 (53%), Gaps = 9/307 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
            H+ VLLE+ I  LN     V +D T G GG+S+   K  S+   +I +D+D  A+   +
Sbjct: 4   KHISVLLEETIDSLNIKEDGVYVDCTLGGGGHSKEILKKLSHKGKLIGIDQDTSAIKAAK 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E ++DY E        F  +   + +     VDG++ DLGVSS Q+D   RGFS+ K  P
Sbjct: 64  ERLKDY-ENVIYVHNNFYNIDSILEELDIDKVDGIIMDLGVSSYQLDEASRGFSYMKDAP 122

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+    +SA +VVN    ++L +IL   GEEK + +IA  IV++R   P +TT +L
Sbjct: 123 LDMRMNREENLSAYNVVNSYEEEELFKILKNYGEEKFSRKIARFIVEKRTENPIETTGEL 182

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             +I+K +        HPA R+FQA+RI VN E++ L + +  +   L   G L +++FH
Sbjct: 183 VEIIRKAIPAKFQREGHPAKRTFQAIRIEVNKELQILNKAIEDSVNRLNKDGRLSIITFH 242

Query: 252 SLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK  F              I         + ITKK + P++E+   N RSRSAK
Sbjct: 243 SLEDRIVKVKFKELEKPCTCPPSFPICVCGKEPQIKIITKKPIEPSKEEKEINSRSRSAK 302

Query: 311 LRAGMRT 317
           LR   + 
Sbjct: 303 LRVCRKI 309


>gi|168180112|ref|ZP_02614776.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum NCTC 2916]
 gi|182668973|gb|EDT80949.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum NCTC 2916]
          Length = 309

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 113/307 (36%), Positives = 164/307 (53%), Gaps = 9/307 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
            H+ VLLE+ I  LN     V +D T G GG+S+   K  S+   +I +D+D  A+   +
Sbjct: 4   KHISVLLEETIDSLNIKEDGVYVDCTLGGGGHSKEILKKLSHKGKLIGIDQDTSAIKAAK 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E ++DY E        F  +   + +     VDG++ DLGVSS Q+D   RGFS+ K  P
Sbjct: 64  ERLKDY-ENVIYVHNNFYNIDSILEELDIDKVDGIIMDLGVSSYQLDEASRGFSYMKDAP 122

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+     SA +VVN    ++L +IL   GEEK + +IA  IV++R   P +TT +L
Sbjct: 123 LDMRMNREENFSAYNVVNNYEEEELFKILKNYGEEKFSRKIARFIVEKRTENPIETTGEL 182

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             +I+K +        HPA R+FQA+RI VN E++ L + +  +   L   G L +++FH
Sbjct: 183 VEIIRKAIPAKFQREGHPAKRTFQAIRIEVNKELQILNKAIEDSVNRLNKDGRLSIITFH 242

Query: 252 SLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK  F              I         + ITKK + P++E+   N RSRSAK
Sbjct: 243 SLEDRIVKVKFKELEKPCTCPPSFPICVCGKEPQIKIITKKPIEPSKEEKEINSRSRSAK 302

Query: 311 LRAGMRT 317
           LR   + 
Sbjct: 303 LRVCRKI 309


>gi|325571379|ref|ZP_08146879.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Enterococcus casseliflavus ATCC 12755]
 gi|325155855|gb|EGC68051.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Enterococcus casseliflavus ATCC 12755]
          Length = 331

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 114/330 (34%), Positives = 175/330 (53%), Gaps = 17/330 (5%)

Query: 1   MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-- 58
           ++ K  K M+         H  V+L++ +  L+  P  V +D T G  G+S         
Sbjct: 5   LDRKRKKHMAD------FQHYTVMLQETVDGLSIRPEGVYVDCTLGGAGHSEYLLSQLSE 58

Query: 59  -SNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLG 112
             ++ A D+D  A+   +E +  Y  K   +  ++ F  L++ +   GV   DG+++DLG
Sbjct: 59  EGHLFAFDQDQTAIDHAKERLAPYVAKGMVTFIKSNFRYLKEALNQHGVSRVDGILYDLG 118

Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASR 171
           VSS Q+D  +RGFS+ +  PLDMRM  +  ++A +VVNQ +   L +I    GEEK + +
Sbjct: 119 VSSPQLDEAERGFSYHQDAPLDMRMDQTAALTAYEVVNQFDYHQLVKIFFRYGEEKFSKQ 178

Query: 172 IAHAIVKRRQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQ 230
           IA  I + RQ  P +TT +L  +I+  +   ++    HPA R FQA+RI VN+E+  +  
Sbjct: 179 IAREIERVRQDHPIETTGELVDIIKTAIPAPARRKGGHPAKRVFQAIRIAVNDELGVIED 238

Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSIT 289
            L  A   L   G + V++FHSLEDR+VK  F   S  K M     +         + IT
Sbjct: 239 SLEQAIHLLAVNGRVSVITFHSLEDRIVKSMFKEYSTPKDMPPGLPMIPEEFQPTLKLIT 298

Query: 290 KKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319
           +K ++PT+E+VA N RSRSAKLR   +  E
Sbjct: 299 RKPLLPTEEEVAENNRSRSAKLRIAEKIKE 328


>gi|307244139|ref|ZP_07526257.1| S-adenosyl-methyltransferase MraW [Peptostreptococcus stomatis DSM
           17678]
 gi|306492510|gb|EFM64545.1| S-adenosyl-methyltransferase MraW [Peptostreptococcus stomatis DSM
           17678]
          Length = 311

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 115/307 (37%), Positives = 176/307 (57%), Gaps = 9/307 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
           +HV VLL + I  LN  P  V +D T G  G+SR   K       ++  D+D  A++  +
Sbjct: 4   NHVSVLLNECIENLNIKPDGVYVDCTMGGAGHSREIAKRLSDKGRLVCFDQDINAINVAK 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + +++Y ++  L  + F  L++ +  +G+   DGV+ DLGVSS Q+D  DRGFS+     
Sbjct: 64  DRLKEYNDRVVLVHSNFENLKEELESRGIFKIDGVLADLGVSSHQLDEADRGFSYMHDAR 123

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM   + +SA  VVN+ + +DL  I+   GEEK A RIA  IVK R      TT DL
Sbjct: 124 LDMRMDDRASMSAWQVVNEYSQEDLYTIIKDYGEEKWAKRIAEFIVKERADHSIDTTFDL 183

Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+K +   ++ +  HPA R+FQA+RI VNNE+  + + +R A   +  GG + +++F
Sbjct: 184 VDVIKKAIPKGARIDGPHPAKRTFQAIRIEVNNELGVINKMIRDAVSMMNKGGRICIITF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  F   +   +             +  + IT+K ++P++E+V FN RSRS+
Sbjct: 244 HSLEDRIVKNEFRDLNKDCICPPELPFCQCNKKSELKIITRKPILPSEEEVDFNPRSRSS 303

Query: 310 KLRAGMR 316
           KLR G +
Sbjct: 304 KLRVGEK 310


>gi|116253056|ref|YP_768894.1| S-adenosyl-methyltransferase MraW [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|262825308|sp|Q1ME25|RSMH_RHIL3 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|115257704|emb|CAK08802.1| putative S-adenosyl-methyltransferase [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 341

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 177/323 (54%), Positives = 226/323 (69%), Gaps = 1/323 (0%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+PVLL++V+A L PAPGK ILD TFGAGGYS +    G+ VIALDRDP A++ GQ  + 
Sbjct: 19  HIPVLLDEVLAALAPAPGKFILDGTFGAGGYSSAILAAGAEVIALDRDPTAIAAGQAMVA 78

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
            +  +  L  + FS L D+ P  G+DGVV D+GVSSMQID  +RGFSFQK+GPLDMRMS 
Sbjct: 79  AHGGRLRLVHSQFSHLADHAPQGGLDGVVLDIGVSSMQIDEAERGFSFQKNGPLDMRMSA 138

Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199
            G+SA+DVVN+A V DL RI   LGEE QA RIAHAI KRR   PF+TT+DL+ LI+   
Sbjct: 139 EGVSAADVVNRAKVADLIRIFHFLGEESQAPRIAHAIEKRRAEKPFETTRDLAGLIELVT 198

Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259
                ++IHPATR FQALRIFVN+E+ ELAQ L +AE ALK GG L+VV+FHSLEDR+VK
Sbjct: 199 PRKMKDKIHPATRVFQALRIFVNDELGELAQALFAAETALKPGGRLVVVTFHSLEDRIVK 258

Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319
           KFF+ R+GK    RH+  ++   A F+++ K +V  ++ +   N R+RSAKLRAG+RT  
Sbjct: 259 KFFSDRAGKASGSRHLPVAHERAATFEAVGKPMVSASEAEAEINPRARSAKLRAGLRTYA 318

Query: 320 RS-IEDDSFVHLPRLPTLSQFRG 341
            +   D S    P L +L +  G
Sbjct: 319 AAEAADMSLFGFPNLASLGKLGG 341


>gi|170759536|ref|YP_001786877.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum A3 str.
           Loch Maree]
 gi|263446098|sp|B1L164|RSMH_CLOBM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|169406525|gb|ACA54936.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 309

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 113/307 (36%), Positives = 163/307 (53%), Gaps = 9/307 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
            H+ VLLE+ I  LN     V +D T G GG+S+   K  S+   +I +D+D  A+   +
Sbjct: 4   KHISVLLEETIDSLNIKEDGVYVDCTLGGGGHSKEILKKLSHKGKLIGIDQDTSAIKAAK 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E ++DY E        F  +   + +     VDG++ DLGVSS Q+D   RGFS+ K  P
Sbjct: 64  ERLKDY-ENVIYVHNNFYNIDSILEELDIDKVDGIIMDLGVSSYQLDEASRGFSYMKDAP 122

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+     SA +VVN    ++L RI    GEEK + +IA  IV++R   P +TT +L
Sbjct: 123 LDMRMNREENFSAYNVVNSYEEEELFRIFKNYGEEKFSRKIARFIVEKRTENPIETTGEL 182

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             +I+K +        HPA R+FQA+RI VN E++ L + +  +   L   G L +++FH
Sbjct: 183 VEIIRKAIPAKFQREGHPAKRTFQAIRIEVNKELQILNKAIEDSVNRLNKDGRLSIITFH 242

Query: 252 SLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK  F              I         + ITKK + P++E+   N RSRSAK
Sbjct: 243 SLEDRIVKVKFKELEKPCTCPPSFPICVCGKEPQIKIITKKPIEPSKEEKEINSRSRSAK 302

Query: 311 LRAGMRT 317
           LR   + 
Sbjct: 303 LRVCRKI 309


>gi|134298535|ref|YP_001112031.1| S-adenosyl-methyltransferase MraW [Desulfotomaculum reducens MI-1]
 gi|263446306|sp|A4J2A3|RSMH_DESRM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|134051235|gb|ABO49206.1| S-adenosyl-methyltransferase MraW [Desulfotomaculum reducens MI-1]
          Length = 313

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 112/307 (36%), Positives = 172/307 (56%), Gaps = 9/307 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            HV VLL + I  L   PG + +D T G  G+S    +       ++ +D+DP A++   
Sbjct: 4   KHVSVLLHESIDGLKIKPGGIYVDCTLGGAGHSLEILRRLGPEGKLVGIDQDPAAIANAA 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E ++++  QF   Q  F Q++  + +     VDG++FDLGVSS Q+D  +RGFS+     
Sbjct: 64  EKLQEFPGQFHAVQRNFFQIKQILREMAISEVDGILFDLGVSSYQLDTPERGFSYMHDAE 123

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM     ISA ++VN  + ++L  I+   GE++ A RIA  IVK R+     TT +L
Sbjct: 124 LDMRMGPDQTISAKELVNDISEEELATIIRRYGEDRWAKRIASFIVKERKKRAIHTTGEL 183

Query: 192 SSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+  V   ++    HPA R+FQALRI VNNE+E L Q ++ A  ALK+GG + V++F
Sbjct: 184 VDIIKAAVPVGARREGPHPAKRTFQALRIAVNNELEILEQTMKDAVTALKSGGRISVITF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR++K  F   +          + +       + +T K + P++E++  N R+RSA
Sbjct: 244 HSLEDRIIKDTFKELANPCTCPPAFPVCACGKQPQIKIVTGKPIQPSKEELEHNPRARSA 303

Query: 310 KLRAGMR 316
           KLR   +
Sbjct: 304 KLRIAEK 310


>gi|152976280|ref|YP_001375797.1| S-adenosyl-methyltransferase MraW [Bacillus cereus subsp. cytotoxis
           NVH 391-98]
 gi|263446007|sp|A7GRP4|RSMH_BACCN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|152025032|gb|ABS22802.1| S-adenosyl-methyltransferase MraW [Bacillus cytotoxicus NVH 391-98]
          Length = 310

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 111/309 (35%), Positives = 168/309 (54%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73
           +  HV VLLE+ +  L+  P    +D T G GG+S         G  +IA D+D  A+  
Sbjct: 1   MFKHVTVLLEETVDGLDIKPNGTYVDCTLGGGGHSSYLLSQLTEGGKLIAFDQDEIAIQN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            ++    Y EQF   ++ F  L + + + G   VDG++FDLGVSS Q+D  +RGFS+   
Sbjct: 61  AKDKFSSYGEQFIAVKSNFRYLSEKLHELGITEVDGILFDLGVSSPQLDTPERGFSYHHD 120

Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM     ++A DVVN  + + L RI    GEEK + +IA  I   R+    +TT 
Sbjct: 121 APLDMRMDQEAPLTAYDVVNNWSYEQLVRIFFQYGEEKFSKQIARKIEAYREKKKIETTG 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  LI++ +   ++    HPA R FQA+RI VN+E++   + L +A + +K GG + V+
Sbjct: 181 ELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALEAAIEIVKPGGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F   S    +     I         + IT+K ++P+  ++  N R+R
Sbjct: 241 TFHSLEDRICKTTFKRNSTTPELPPGLPIIPEEFKPKLKLITRKPILPSDVELEENNRAR 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRIAEK 309


>gi|192292422|ref|YP_001993027.1| S-adenosyl-methyltransferase MraW [Rhodopseudomonas palustris
           TIE-1]
 gi|262825558|sp|B3QFN9|RSMH_RHOPT RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|192286171|gb|ACF02552.1| S-adenosyl-methyltransferase MraW [Rhodopseudomonas palustris
           TIE-1]
          Length = 332

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 151/332 (45%), Positives = 199/332 (59%), Gaps = 8/332 (2%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAV 71
           +  +   H+PVL  + + LL P  G + +D TFGAGGY+R   +  GS VIA+DRDP A+
Sbjct: 1   MKPSDTRHIPVLGPEAVGLLAPRAGGIYVDGTFGAGGYTRLILETAGSRVIAIDRDPTAI 60

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQ 128
           + G + + D   + +L Q  FS L D    +G   VDGVV D+GVSSMQ+D  +RGFSF+
Sbjct: 61  AGGADLVADAGHRLTLVQDRFSNLADVCAAQGAATVDGVVMDIGVSSMQLDQAERGFSFR 120

Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             GPLDMRM   G SA+DVV +A+  DL  I+ I GEE+ +  +A AIV  R  AP  TT
Sbjct: 121 FDGPLDMRMGRDGPSAADVVARASETDLANIIYIFGEERYSRHVARAIVAARSDAPITTT 180

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           + L+ ++ K V  +K   IHPATR+FQ LRIFVN E++EL Q L +AE+ LK GG L VV
Sbjct: 181 KALADIVAKVV-RAKPGEIHPATRTFQGLRIFVNEELDELHQALDAAERVLKPGGRLAVV 239

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDR+VK F   RS      RH+         F  ++K+ +V    +VA N R+RS
Sbjct: 240 SFHSLEDRIVKTFLTERSKTGGGSRHLPEVAQAAPSFTLLSKRPIVAGDAEVAANPRARS 299

Query: 309 AKLRAGMRTVERSIEDDSFVHLPRLPTLSQFR 340
           AKLR   RT   +        LP  PTL+   
Sbjct: 300 AKLRGAERTEAPAHAAGD---LPGWPTLASVM 328


>gi|169827004|ref|YP_001697162.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Lysinibacillus sphaericus C3-41]
 gi|263456365|sp|B1HPY0|RSMH_LYSSC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|168991492|gb|ACA39032.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Lysinibacillus sphaericus C3-41]
          Length = 316

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 111/316 (35%), Positives = 170/316 (53%), Gaps = 9/316 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSC 73
           + DH  VLL++ +  LN  P  V +D T G  G+S            +I  D+D  A+  
Sbjct: 1   MFDHTTVLLKETVDGLNIDPDGVYVDCTLGGAGHSEYLVQQLSDKGRLICFDQDMTAIEN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +  +  Y E+ +   + F  L++ +   G   VDG+++DLGVSS Q+D  +RGFS+   
Sbjct: 61  AKIRLAPYIERVTFIHSNFRYLKEELLAHGFEQVDGILYDLGVSSPQLDTPERGFSYHHD 120

Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM  +  ++A +VVNQ   +DL RI    GEEK + ++A  I + R+SAP +TT 
Sbjct: 121 APLDMRMDQTATLTAFEVVNQWAYEDLVRIFFRYGEEKFSKQVARKIEEARKSAPIETTG 180

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L  LI++ +  + +    HPA R FQA+RI VN+E+      L  A   +  GG + V+
Sbjct: 181 QLVELIKEGIPAAARRKGGHPAKRIFQAIRIAVNDELGAAEDSLVDAIDMINVGGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K  F   S    +     +  +      + IT+K +VP+ E++  N R+R
Sbjct: 241 TFHSLEDRLCKTIFKEASSLPELPPNLPVIPDDMKPTLKLITRKPIVPSDEELEVNNRAR 300

Query: 308 SAKLRAGMRTVERSIE 323
           SAKLR   +  ++  E
Sbjct: 301 SAKLRVVEKINDKGRE 316


>gi|299534665|ref|ZP_07047997.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Lysinibacillus fusiformis ZC1]
 gi|298730038|gb|EFI70581.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Lysinibacillus fusiformis ZC1]
          Length = 316

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 112/316 (35%), Positives = 171/316 (54%), Gaps = 9/316 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSC 73
           + DH  VLL++ +  LN  P  V +D T G  G+S            +I  D+D  A+  
Sbjct: 1   MFDHTTVLLKETVDGLNIDPDGVYVDCTLGGAGHSEYLVQQLSDKGRLICFDQDMTAIEN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +  +  Y E+ +   + F  L++ +   G   VDG+++DLGVSS Q+D  +RGFS+   
Sbjct: 61  AKIRLAPYIERVTFIHSNFRYLKEELLAHGIKQVDGILYDLGVSSPQLDTPERGFSYHHD 120

Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM  +  ++ASDVVNQ   +DL RI    GEEK + ++A  I + R+ AP +TT 
Sbjct: 121 APLDMRMDQTATLTASDVVNQWAYEDLVRIFFRYGEEKFSKQVARKIEEARKIAPIETTG 180

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L  LI++ +  + +    HPA R FQA+RI VN+E+      L  A   +  GG + V+
Sbjct: 181 QLVELIKEGIPAAARRKGGHPAKRIFQAIRIAVNDELGAAEDSLVDAIDMINVGGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K  F   S    +     +  +      + IT+K ++P+ E++A N R+R
Sbjct: 241 TFHSLEDRLCKTIFKEASSLPELPPNLPVIPDDMKPTLKLITRKPIIPSDEELAVNNRAR 300

Query: 308 SAKLRAGMRTVERSIE 323
           SAKLR   +  ++  E
Sbjct: 301 SAKLRVVEKINDKGRE 316


>gi|316933178|ref|YP_004108160.1| S-adenosyl-methyltransferase MraW [Rhodopseudomonas palustris DX-1]
 gi|315600892|gb|ADU43427.1| S-adenosyl-methyltransferase MraW [Rhodopseudomonas palustris DX-1]
          Length = 332

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 153/331 (46%), Positives = 197/331 (59%), Gaps = 8/331 (2%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAV 71
           + H+   HVPVL  + + LL P  G V +D TFGAGGY+R   +  GS VIA+DRDP A+
Sbjct: 1   MSHSDSRHVPVLGPEAVGLLAPRDGGVYVDGTFGAGGYTRLILQTAGSRVIAIDRDPTAI 60

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQ 128
             G   + +   + +L Q  FS L D    +G   VDGVV D+GVSSMQ+D  +RGFSF+
Sbjct: 61  VGGAGLVAEAGGRLTLVQDRFSNLADVCAAQGAATVDGVVIDIGVSSMQLDQAERGFSFR 120

Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             GPLDMRM   G SA+DVV +A+  DL  I+ I GEE+ +  +A AIV  R   P  TT
Sbjct: 121 FDGPLDMRMGRDGPSAADVVARASETDLANIIYIFGEERYSRHVARAIVAARSETPITTT 180

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           + L+ ++ K V  +K   IHPATR+FQ LRIFVN E++EL Q L +AE+ LK GG L VV
Sbjct: 181 KALADIVAKVV-RAKPGEIHPATRTFQGLRIFVNEELDELHQALDAAERVLKPGGRLAVV 239

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDR+VK F A RS      RH+         F  + K+ +V    +VA N R+RS
Sbjct: 240 SFHSLEDRIVKTFLAERSKTGGGSRHLPEVAQAAPSFTLLAKRPIVAGDAEVAANPRARS 299

Query: 309 AKLRAGMRTVERSIEDDSFVHLPRLPTLSQF 339
           AKLR   RT   +        LP  PTL+  
Sbjct: 300 AKLRGAERTEAPAHAAGD---LPGWPTLASV 327


>gi|229117415|ref|ZP_04246791.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus Rock1-3]
 gi|228666025|gb|EEL21491.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus Rock1-3]
          Length = 310

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 111/309 (35%), Positives = 170/309 (55%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73
           +  HV VLL++ +  L+  P    +D T G GG+S         G  +IA D+D  A+  
Sbjct: 1   MFKHVTVLLKETVDGLDIKPDGTYVDCTLGGGGHSSYLLSQLTDGGKLIAFDQDEIAIQN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E    Y EQF   ++ F  L + + + G   VDG++FDLGVSS Q+D  +RGFS+   
Sbjct: 61  AKEKFSSYGEQFITVKSNFRYLSEKLQELGITEVDGILFDLGVSSPQLDTPERGFSYHHD 120

Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM     ++A DV+N  + + L RI    GEEK + +IA  I   R++   +TT 
Sbjct: 121 APLDMRMDQDAPLTAYDVINSWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTG 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  LI++ +   ++    HPA R FQA+RI VN+E++   + L SA + +K GG + V+
Sbjct: 181 ELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIELVKPGGRVSVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F   S    +     I  +      + IT+K ++P+  ++  N R+R
Sbjct: 241 TFHSLEDRICKTTFKRNSTTPQLPPGLPIIPDEFKPKLKLITRKPILPSDIELEENNRAR 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRIAEK 309


>gi|148379426|ref|YP_001253967.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum A str.
           ATCC 3502]
 gi|153932097|ref|YP_001383805.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum A str.
           ATCC 19397]
 gi|153935599|ref|YP_001387355.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum A str.
           Hall]
 gi|263446050|sp|A7FTX8|RSMH_CLOB1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446073|sp|A5I1T3|RSMH_CLOBH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|148288910|emb|CAL82997.1| S-adenosyl-methyltransferase [Clostridium botulinum A str. ATCC
           3502]
 gi|152928141|gb|ABS33641.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum A str.
           ATCC 19397]
 gi|152931513|gb|ABS37012.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum A str.
           Hall]
          Length = 309

 Score =  399 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 112/307 (36%), Positives = 164/307 (53%), Gaps = 9/307 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
            H+ VLLE+ I  LN     V +D T G GG+S+   K  S+   +I +D+D  A+   +
Sbjct: 4   KHISVLLEETIDSLNIKEDGVYVDCTLGGGGHSKEILKKLSHKGKLIGIDQDTSAIKAAK 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E ++DY E        F  +   + +     VDG++ DLGVSS Q+D   RGFS+ K  P
Sbjct: 64  ERLKDY-ENVIYVHNNFYNIDSILEELDIDKVDGIIMDLGVSSYQLDEASRGFSYMKDAP 122

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+    +SA  V+N    ++L +IL   GEEK + +IA  IV++R   P +TT +L
Sbjct: 123 LDMRMNREENLSAYGVINNYEEEELFKILKNYGEEKFSRKIARFIVEKRTENPIETTGEL 182

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             +I+K +        HPA R+FQA+RI VN E++ L + +  +   L   G L +++FH
Sbjct: 183 VEIIRKAIPAKFQREGHPAKRTFQAIRIEVNKELQILNKAIEDSVNRLNKDGRLSIITFH 242

Query: 252 SLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK  F              I         + ITKK + P++E+   N RSRSAK
Sbjct: 243 SLEDRIVKVKFKELEKPCTCPPSFPICVCGKEPQIKIITKKPIEPSKEEKEINSRSRSAK 302

Query: 311 LRAGMRT 317
           LR   + 
Sbjct: 303 LRVCRKI 309


>gi|150390647|ref|YP_001320696.1| S-adenosyl-methyltransferase MraW [Alkaliphilus metalliredigens
           QYMF]
 gi|263433264|sp|A6TS69|RSMH1_ALKMQ RecName: Full=Ribosomal RNA small subunit methyltransferase H 1;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase 1;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH 1
 gi|149950509|gb|ABR49037.1| S-adenosyl-methyltransferase MraW [Alkaliphilus metalliredigens
           QYMF]
          Length = 311

 Score =  399 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 111/308 (36%), Positives = 174/308 (56%), Gaps = 9/308 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
           +H  VLL++ I  L+     + +D T G  G+S+   K+      +I +D+D  A+S   
Sbjct: 4   EHTSVLLKECIEALDIKENGIYVDGTLGGAGHSQEILKVLGKEGLLIGIDQDENALSAAG 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E + ++  +  L    F  L   + +     +DGV+ DLGVSS Q+D  +RGFS+ +  P
Sbjct: 64  ERLEEHGTKVKLVHDNFHNLDKILENLEITTIDGVLLDLGVSSHQLDERERGFSYMQDAP 123

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM   SG SA D+VN  + K+L RI+   GE++ A RIA  IV+ R+ AP +TT  +
Sbjct: 124 LDMRMDRRSGFSARDIVNDYSEKELERIIKEYGEDRWARRIAQFIVQERELAPIETTHQM 183

Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+K V   ++ +  HPA R+FQA+RI VN E+E +   + +A K +K GG + ++SF
Sbjct: 184 VEVIKKAVPKGARKDGPHPAKRTFQAIRIEVNQELEIIEATIEAAAKHMKPGGRIAIISF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  F       +      +       + + +T+K ++P++ ++  N RSRSA
Sbjct: 244 HSLEDRIVKNVFRRLQNPCVCPPQFPVCKCEKEQMVKIVTRKPILPSEAELEVNPRSRSA 303

Query: 310 KLRAGMRT 317
           KLR   R 
Sbjct: 304 KLRVAERV 311


>gi|229174585|ref|ZP_04302115.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus MM3]
 gi|228608890|gb|EEK66182.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus MM3]
          Length = 310

 Score =  399 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 111/309 (35%), Positives = 168/309 (54%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73
           +  HV VLL++ +  L+  P    +D T G GG+S         G  +IA D+D  A+  
Sbjct: 1   MFKHVTVLLKETVDGLDIKPDGTYVDCTLGGGGHSSYLLSQLTEGGRLIAFDQDEIAIQN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E    Y EQF   ++ F  L + + + G   VDG++FDLGVSS Q+D  +RGFS+   
Sbjct: 61  AKEKFSSYGEQFITVKSNFRYLSEKLQELGITEVDGILFDLGVSSPQLDTPERGFSYHHD 120

Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM     ++A DVVN  + + L RI    GEEK + +I   I   R++   +TT 
Sbjct: 121 APLDMRMDQDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIVRKIEAYRENKAIETTG 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  LI++ +   ++    HPA R FQA+RI VN+E++   + L SA   +K GG + V+
Sbjct: 181 ELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIDMVKPGGRVSVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F   S    +     I  +      + IT+K ++P+  ++  N R+R
Sbjct: 241 TFHSLEDRICKTTFKRNSTTPQLPPGLPIIPDEFKPKLKLITRKPILPSDIELEENNRAR 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRIAEK 309


>gi|302874623|ref|YP_003843256.1| S-adenosyl-methyltransferase MraW [Clostridium cellulovorans 743B]
 gi|307690766|ref|ZP_07633212.1| S-adenosyl-methyltransferase MraW [Clostridium cellulovorans 743B]
 gi|302577480|gb|ADL51492.1| S-adenosyl-methyltransferase MraW [Clostridium cellulovorans 743B]
          Length = 311

 Score =  399 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 106/308 (34%), Positives = 163/308 (52%), Gaps = 10/308 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            HV VLLE+ I  L+  P  + +D T G  G+S    K       +I +D+D  A++  +
Sbjct: 4   KHVSVLLEECIEGLSIKPDGIYVDCTLGGAGHSFEIVKQLTSEGRLIGIDQDTNAINAAK 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E ++DY    +     F  + + + +     VDG++ DLGVSS Q+D  +RGFS+ K  P
Sbjct: 64  EKLKDY-NNVTYVHDNFHNIGEILENLNIDKVDGILMDLGVSSHQLDVAERGFSYMKDAP 122

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+     SA D+VN  + + L +I+   GEEK A RIA  IVK R     +TT  L
Sbjct: 123 LDMRMNQERDFSAYDIVNTYSEEQLFKIIRDYGEEKFAKRIASFIVKNRNEKTIETTFQL 182

Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+  +    +    HPA R+FQA+RI VN E+E L + +      L   G + +++F
Sbjct: 183 VEIIKNAIPAKARREGPHPAKRTFQAIRIEVNKELEILDKAINDGIDKLALDGRICIITF 242

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  +  ++      +   I         + I++K +  + E++ +N RSRSA
Sbjct: 243 HSLEDRIVKNIYKEQANPCTCPKEFPICICNRKPKVKIISRKPIEASAEELEYNPRSRSA 302

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 303 KLRVAEKI 310


>gi|168182383|ref|ZP_02617047.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum Bf]
 gi|237794792|ref|YP_002862344.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum Ba4 str.
           657]
 gi|263446362|sp|C3KV90|RSMH_CLOB6 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|182674378|gb|EDT86339.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum Bf]
 gi|229262949|gb|ACQ53982.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum Ba4 str.
           657]
          Length = 309

 Score =  399 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 112/307 (36%), Positives = 164/307 (53%), Gaps = 9/307 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
            H+ VLLE+ I  LN     V +D T G GG+S+   K  S+   +I +D+D  A+   +
Sbjct: 4   KHISVLLEETIDSLNIKEDGVYVDCTLGGGGHSKEILKKLSHKGKLIGIDQDTSAIKAAK 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E ++DY E        F  +   + +     VDG++ DLGVSS Q+D   RGFS+ K  P
Sbjct: 64  ERLKDY-ENVIYVHNNFYNIDSILEELDIDKVDGIIMDLGVSSYQLDEASRGFSYMKDAP 122

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+    +SA  V+N    ++L +IL   GEEK + +IA  IV++R   P +TT +L
Sbjct: 123 LDMRMNREENLSAYGVINNYKEEELFKILKNYGEEKFSRKIARFIVEKRTENPIETTGEL 182

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             +I+K +        HPA R+FQA+RI VN E++ L + +  +   L   G L +++FH
Sbjct: 183 VEIIRKAIPAKFQREGHPAKRTFQAIRIEVNKELQILNKAIEDSVNRLNKDGRLSIITFH 242

Query: 252 SLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK  F              I         + ITKK + P++E+   N RSRSAK
Sbjct: 243 SLEDRIVKVKFKELEKPCTCPPSFPICVCGKEPQIKIITKKPIEPSKEEKEINSRSRSAK 302

Query: 311 LRAGMRT 317
           LR   + 
Sbjct: 303 LRVCRKI 309


>gi|49186768|ref|YP_030020.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. Sterne]
 gi|49180695|gb|AAT56071.1| S-adenosyl-methyltransferase MraW [Bacillus anthracis str. Sterne]
          Length = 310

 Score =  399 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 111/309 (35%), Positives = 170/309 (55%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73
           + +HV VLL++ +  L+  P    +D T G GG+S         G  +IA D+D  A+  
Sbjct: 1   MFNHVTVLLKETVDGLDIKPDGTYVDCTLGGGGHSSYLLSQLTEGGRLIAFDQDEIAIQN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E    Y EQF   ++ F  L + + + G   VDG++FDLGVSS Q+D  +RGFS+   
Sbjct: 61  AKEKFSSYGEQFITVKSNFRYLSEKLQELGITEVDGILFDLGVSSPQLDTPERGFSYHHD 120

Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM     ++A D VN  + + L RI    GEEK + +IA  I   R++   +TT 
Sbjct: 121 APLDMRMDQDAPLTAYDAVNSWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTG 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  LI++ +   ++    HPA R FQA+RI VN+E++   + L SA + +K GG + V+
Sbjct: 181 ELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRVSVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F   S    +     I  +      + IT+K ++P+  ++  N R+R
Sbjct: 241 TFHSLEDRICKTTFKRNSTTPQLPPGLPIIPDEFKPKLKLITRKPILPSDIELEENNRAR 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRIAEK 309


>gi|229075675|ref|ZP_04208657.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus Rock4-18]
 gi|229098389|ref|ZP_04229334.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus Rock3-29]
 gi|228685006|gb|EEL38939.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus Rock3-29]
 gi|228707451|gb|EEL59642.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus Rock4-18]
          Length = 310

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 111/309 (35%), Positives = 170/309 (55%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73
           +  HV VLL++ +  L+  P    +D T G GG+S         G  +IA D+D  A+  
Sbjct: 1   MFKHVTVLLKETVDGLDIKPDGTYVDCTLGGGGHSSYLLSQLTDGGKLIAFDQDEIAIQN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E    Y EQF   ++ F  L + + + G   VDG++FDLGVSS Q+D  +RGFS+   
Sbjct: 61  AKEKFSSYGEQFITVKSNFRYLSEKLQELGITEVDGILFDLGVSSPQLDTPERGFSYHHD 120

Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM     ++A DV+N  + + L RI    GEEK + +IA  I   R++   +TT 
Sbjct: 121 APLDMRMDQDAPLTAYDVINSWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTG 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  LI++ +   ++    HPA R FQA+RI VN+E++   + L SA + +K GG + V+
Sbjct: 181 ELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRVSVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F   S    +     I  +      + IT+K ++P+  ++  N R+R
Sbjct: 241 TFHSLEDRICKTTFKRNSTTPQLPPGLPIIPDEFKPKLKLITRKPILPSDIELEENNRAR 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRIAEK 309


>gi|190892591|ref|YP_001979133.1| S-adenosyl-methyltransferase [Rhizobium etli CIAT 652]
 gi|262825238|sp|B3PTW8|RSMH_RHIE6 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|190697870|gb|ACE91955.1| S-adenosyl-methyltransferase protein [Rhizobium etli CIAT 652]
          Length = 341

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 174/323 (53%), Positives = 224/323 (69%), Gaps = 1/323 (0%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+PVLLE+V+A L PAPGK+ILD TFGAGGY+ +    G+ VIALDRDP A++ GQ  + 
Sbjct: 19  HIPVLLEEVLAALAPAPGKLILDGTFGAGGYTSAILAAGAEVIALDRDPTAIAAGQAMVA 78

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
            +  +  L  + FS L D+ P  G+DGVV D+GVSSMQ+D  +RGFSFQK+GPLDMRMS 
Sbjct: 79  AHGGRLKLVHSQFSHLADHAPQGGLDGVVLDIGVSSMQLDEAERGFSFQKNGPLDMRMSA 138

Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199
           +G+SA+DV+N+A V DL RI   LGEE QA RIAHAI KRR   PF+TT+DL+ LI+   
Sbjct: 139 TGVSAADVLNRAKVADLIRIFHFLGEESQAPRIAHAIEKRRAEKPFETTRDLAGLIELVT 198

Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259
                ++IHPATR FQALRIFVN+E+ ELAQ L +AE  LK GG L+VV+FHSLEDR+VK
Sbjct: 199 PRKMKDKIHPATRVFQALRIFVNDELGELAQALFAAETVLKPGGRLVVVTFHSLEDRIVK 258

Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT-V 318
           KFF+ R+GK    RH+  ++   A F ++ K +V  ++ +   N R+RSAKLRAG RT  
Sbjct: 259 KFFSDRAGKASGSRHLPAAHERAATFTAVGKSMVSASEAEAESNPRARSAKLRAGQRTAA 318

Query: 319 ERSIEDDSFVHLPRLPTLSQFRG 341
                D S    P L +L +  G
Sbjct: 319 AAEAADMSLFGFPNLASLGKLGG 341


>gi|315646023|ref|ZP_07899144.1| S-adenosyl-methyltransferase MraW [Paenibacillus vortex V453]
 gi|315278784|gb|EFU42098.1| S-adenosyl-methyltransferase MraW [Paenibacillus vortex V453]
          Length = 317

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 110/316 (34%), Positives = 170/316 (53%), Gaps = 16/316 (5%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSC 73
           +  H+ VL ++    L   P  + +D T G  G+S            +IALD+D +A++ 
Sbjct: 1   MFHHITVLKQEATEGLRIKPDGIYVDCTLGGAGHSSLIASQLSSNGRLIALDQDDWALNN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVP---------DKGVDGVVFDLGVSSMQIDCGDRG 124
            +E M+ Y ++ +L +  F  L++ +             VDG++FDLGVSS Q D G+RG
Sbjct: 61  AREVMKPYVDRITLVKTNFRDLEEVLRIEVGVDENGQPQVDGILFDLGVSSPQFDEGERG 120

Query: 125 FSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           FS+    PLDMRM  S  ++A+ +VN+   +++ RIL   GEEK + RIA  IV+RR   
Sbjct: 121 FSYNHDAPLDMRMDQSAELTAAKIVNEWPEQEIARILYEYGEEKFSRRIAKVIVERRVQG 180

Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           P  TT +L  +I++ +  + +    HPA RSFQA RI VN+E+      L  A + L  G
Sbjct: 181 PIHTTGELVEMIKEGIPAAARRTGGHPAKRSFQAFRIAVNDELGAFKDALHQAVRCLAPG 240

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDV 300
           G + V++FHSLEDR+ K+ F S   K        M          + + +K ++P+ E++
Sbjct: 241 GRVSVITFHSLEDRICKQIFNSYIPKCTCPPDFPMCVCGGGQGDLKLVNRKPLIPSVEEI 300

Query: 301 AFNRRSRSAKLRAGMR 316
             N R+RSAKLR   +
Sbjct: 301 ESNPRARSAKLRIAEK 316


>gi|257867494|ref|ZP_05647147.1| methyltransferase [Enterococcus casseliflavus EC30]
 gi|257873823|ref|ZP_05653476.1| methyltransferase [Enterococcus casseliflavus EC10]
 gi|257877573|ref|ZP_05657226.1| methyltransferase [Enterococcus casseliflavus EC20]
 gi|257801550|gb|EEV30480.1| methyltransferase [Enterococcus casseliflavus EC30]
 gi|257807987|gb|EEV36809.1| methyltransferase [Enterococcus casseliflavus EC10]
 gi|257811739|gb|EEV40559.1| methyltransferase [Enterococcus casseliflavus EC20]
          Length = 319

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 111/311 (35%), Positives = 169/311 (54%), Gaps = 11/311 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H  V+L++ +  L   P  V +D T G  G+S           ++ A D+D  A+   +E
Sbjct: 6   HYTVMLQETVDGLKIRPEGVYVDCTLGGAGHSEYLLSQLSEEGHLFAFDQDQTAIDHAKE 65

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  Y  K   +  ++ F  L++ +   GV   DG+++DLGVSS Q+D  +RGFS+ +  
Sbjct: 66  RLAPYVAKGMVTFIKSNFRYLKEALHQHGVSRVDGILYDLGVSSPQLDEAERGFSYHQDA 125

Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  +  ++A +VVNQ +   L +I    GEEK + +IA  I + RQ  P +TT +
Sbjct: 126 PLDMRMDQTAALTAYEVVNQFDYHQLVKIFFRYGEEKFSKQIAREIERVRQDHPIETTGE 185

Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I+  +   ++    HPA R FQA+RI VN+E+  + + L  A   L   G + V++
Sbjct: 186 LVDIIKTAIPAPARRKGGHPAKRVFQAIRIAVNDELGVIEESLEQAIHLLAVNGRVSVIT 245

Query: 250 FHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK  F   S  K M     +         + IT+K ++PT+E+VA N RSRS
Sbjct: 246 FHSLEDRIVKSMFKEYSTPKDMPPGLPMIPEEFQPTLKLITRKPLLPTEEEVAENNRSRS 305

Query: 309 AKLRAGMRTVE 319
           AKLR   +  E
Sbjct: 306 AKLRIAEKIKE 316


>gi|167040640|ref|YP_001663625.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter sp. X514]
 gi|256752962|ref|ZP_05493788.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|300914681|ref|ZP_07131997.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter sp. X561]
 gi|307724085|ref|YP_003903836.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter sp. X513]
 gi|262825863|sp|B0K3H8|RSMH_THEPX RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|166854880|gb|ABY93289.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter sp. X514]
 gi|256748157|gb|EEU61235.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|300889616|gb|EFK84762.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter sp. X561]
 gi|307581146|gb|ADN54545.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter sp. X513]
          Length = 308

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 113/304 (37%), Positives = 171/304 (56%), Gaps = 8/304 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77
           H  VLL++ I  LN  P  + +D T G GG+S    K      +IA+DRD  A+   +E 
Sbjct: 5   HKSVLLKETIEYLNIKPEGIYVDGTLGGGGHSEEILKRLTTGKLIAIDRDLDAIKASKER 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +++YK         F  +++ +       VDG++ DLGVSS Q++   RGFS+ K  P+D
Sbjct: 65  LKNYK-NVEYINDNFKNIKEILKSLNIDKVDGILLDLGVSSYQLEEVKRGFSYMKDAPMD 123

Query: 135 MRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM  +   SA DVVN+ + ++L R++   GEEK ASRIA  IVK R+    +TT  L  
Sbjct: 124 MRMDKNSPFSAYDVVNKYSQQELERVIREYGEEKWASRIAKFIVKEREKGEIKTTFQLVE 183

Query: 194 LIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +I+  +   ++    HPA R+FQA+RI VN E++ L + +    + L+  G + +++FHS
Sbjct: 184 IIKNAIPASARREGPHPAKRTFQAIRIEVNEELKGLDKAIEDMVEVLRGKGRIAIITFHS 243

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK  F           +M  +     V + ITKK V+P++E++  N RSRSAKLR
Sbjct: 244 LEDRIVKNTFKKLENPCTCPPNMPCTCGKKPVVKIITKKPVLPSKEEIETNSRSRSAKLR 303

Query: 313 AGMR 316
              +
Sbjct: 304 VAEK 307


>gi|289423186|ref|ZP_06425001.1| S-adenosyl-methyltransferase MraW [Peptostreptococcus anaerobius
           653-L]
 gi|289156517|gb|EFD05167.1| S-adenosyl-methyltransferase MraW [Peptostreptococcus anaerobius
           653-L]
          Length = 311

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 108/307 (35%), Positives = 172/307 (56%), Gaps = 9/307 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            HV VLL++ I  LN  P    +D T G  G+S+   K       +I  D+D  A++  +
Sbjct: 4   KHVSVLLDECIDNLNINPDGTYVDCTMGGAGHSKEIAKRLGENGRLICFDQDINAINVAK 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E + ++K++  L  + F  +++ + ++ +D   GV+ DLGVSS Q+D   RGFS+     
Sbjct: 64  ERLAEFKDRVILVHSNFENIKEELLERNIDSIDGVLADLGVSSHQLDEAFRGFSYMNDAS 123

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM   + +SA DVVN  + +DL RI+   GEE  ASRIA  IV+ R+     TT +L
Sbjct: 124 LDMRMDDRNSMSAWDVVNTYSQEDLHRIIKDYGEENWASRIAQFIVEERKEKDINTTFEL 183

Query: 192 SSLIQKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+K +      +  HPA R+FQA+RI VNNE+  + + +  +   +  GG + +++F
Sbjct: 184 VDIIKKAIPKKARIDGPHPAKRTFQAIRIEVNNELGVIKKMIDDSVSMMNPGGRICIITF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  +   S   +        S    +  + IT+K ++P+++++  N RSRSA
Sbjct: 244 HSLEDRIVKNEYKYLSLDCICPPELPFCSCDKVSEVKIITRKPILPSKQEIEVNPRSRSA 303

Query: 310 KLRAGMR 316
           KLR   +
Sbjct: 304 KLRVAEK 310


>gi|257888481|ref|ZP_05668134.1| methyltransferase [Enterococcus faecium 1,141,733]
 gi|257824535|gb|EEV51467.1| methyltransferase [Enterococcus faecium 1,141,733]
          Length = 319

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 107/313 (34%), Positives = 172/313 (54%), Gaps = 10/313 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  V+L++ +  LN  P  V +D T G  G+S           ++ A D+D  A+ 
Sbjct: 3   ETFQHYTVMLKETVDGLNIKPDGVYVDCTLGGAGHSEYLLSQLSSKGHLYAFDQDQKAID 62

Query: 73  CGQETMRDYKEQ--FSLFQATFSQLQDYVPDK--GVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             +  +  Y EQ   +  +A F +L++ + +    VDG+++DLGVSS Q+D  +RGFS+ 
Sbjct: 63  HAKLRLASYVEQGMVTFIKANFRELEERLSEYVDKVDGILYDLGVSSPQLDEAERGFSYH 122

Query: 129 KSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           +  PLDMRM  S  ++A  V+N+    +L +I    GEEK + +IA  I + R++ P QT
Sbjct: 123 QDAPLDMRMDQSAPLTAYHVINEYPYHELVKIFFRYGEEKFSKQIAREIERVRKTKPIQT 182

Query: 188 TQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T +L  +I++ +   ++    HPA R FQA+RI VN+E+      L  A + LK  G + 
Sbjct: 183 TGELVEIIKQVIPAPARRKGGHPAKRIFQAVRIAVNDELGAEETSLEQAIRLLKVNGRIS 242

Query: 247 VVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           V++FHSLEDR+VK  F   S  + +     +  +      + IT+K ++P++E++A N R
Sbjct: 243 VITFHSLEDRIVKSMFKEYSTVQDLPPGLPVIPDEFQPELKVITRKPILPSEEELAENNR 302

Query: 306 SRSAKLRAGMRTV 318
           SRSAKLR   +  
Sbjct: 303 SRSAKLRIAEKIR 315


>gi|229031550|ref|ZP_04187550.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus AH1271]
 gi|228729839|gb|EEL80819.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus AH1271]
          Length = 310

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 113/309 (36%), Positives = 171/309 (55%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73
           +  HV VLL++ +  L+  PG   +D T G GG+S         G  +IA D+D  A+  
Sbjct: 1   MFKHVTVLLKETVDGLDIKPGGTYVDCTLGGGGHSSYLLSQLTEGGKLIAFDQDEIAIQN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E    Y EQF   ++ F  L + + + G   VDG++FDLGVSS Q+D  +RGFS+   
Sbjct: 61  AKEKFSSYGEQFITVKSNFRYLSEKLQELGITEVDGILFDLGVSSPQLDTPERGFSYHHD 120

Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM     ++A DVVN  + + L RI    GEEK + +IA  I   R++   +TT 
Sbjct: 121 APLDMRMDQDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTA 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  LI++ +   ++    HPA R FQA+RI VN+E++   + L SA + +K GG + V+
Sbjct: 181 ELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRVSVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F   S    +     I  +      + IT+K ++P+  ++  N R+R
Sbjct: 241 TFHSLEDRICKTTFKRNSTTPQLPQGLPIIPDEFKPKLKLITRKPILPSDIELEENNRAR 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRIAEK 309


>gi|218133493|ref|ZP_03462297.1| hypothetical protein BACPEC_01360 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990868|gb|EEC56874.1| hypothetical protein BACPEC_01360 [Bacteroides pectinophilus ATCC
           43243]
          Length = 312

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 102/307 (33%), Positives = 170/307 (55%), Gaps = 9/307 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
            H  VLL++ I  LN  P  + +D T G GG+S    K    G  +I +D+D  A+   +
Sbjct: 4   KHKSVLLDETIESLNIKPNGIYVDGTLGGGGHSYEIAKRLTDGGRLIGIDQDEDAIRAAK 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E + ++ ++ ++ +  +  +   + + GV   DG++ D+GVSS Q+D  +RGF++++  P
Sbjct: 64  ERLSEFADRVTIVRDNYCNMPKVLDELGVSKVDGILLDIGVSSYQLDEAERGFTYKQDAP 123

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM     ++A D+VN  + +DL RI+   GE+K A  IA  IV+ RQ  P +TT +L
Sbjct: 124 LDMRMDQRQEMTAKDIVNGYSEEDLYRIIRDYGEDKFAKNIAKHIVQARQIKPVETTFEL 183

Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+  +    +    HPA ++FQA+RI +N E+E L + + +    L   G L +++F
Sbjct: 184 DEIIKAAIPMKFRATGGHPAKKTFQAIRIELNRELEVLDESIDAMTDLLNDNGRLCIITF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  F              +         + IT+K +VP +E++  N+R++S+
Sbjct: 244 HSLEDRIVKTRFRKNENPCTCPPDFPVCVCGKKPKGKVITRKPIVPDEEELEENKRAKSS 303

Query: 310 KLRAGMR 316
           KLR   R
Sbjct: 304 KLRVFER 310


>gi|257899142|ref|ZP_05678795.1| methyltransferase [Enterococcus faecium Com15]
 gi|293571737|ref|ZP_06682756.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium E980]
 gi|257837054|gb|EEV62128.1| methyltransferase [Enterococcus faecium Com15]
 gi|291608194|gb|EFF37497.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium E980]
          Length = 319

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 107/313 (34%), Positives = 173/313 (55%), Gaps = 10/313 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  V+L++ +  LN  P  V +D T G  G+S           ++ A D+D  A+ 
Sbjct: 3   ETFQHYTVMLKETVDGLNIKPDGVYVDCTLGGAGHSEYLLSQLSSKGHLYAFDQDQKAID 62

Query: 73  CGQETMRDYKEQ--FSLFQATFSQLQDYVPDK--GVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             +  +  Y EQ   +  +A F +L++ + +    VDG+++DLGVSS Q+D  +RGFS+ 
Sbjct: 63  HAKLRLASYVEQGMVTFIKANFRELEERLSEYVDKVDGILYDLGVSSPQLDEAERGFSYH 122

Query: 129 KSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           +  PLDMRM  S  ++A  V+N+ +  +L +I    GEEK + +IA  I + R++ P QT
Sbjct: 123 QDAPLDMRMDQSAPLTAYHVINEYSYHELVKIFFRYGEEKFSKQIAREIERVRKTKPIQT 182

Query: 188 TQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T +L  +I++ +   ++    HPA R FQA+RI VN+E+      L  A + LK  G + 
Sbjct: 183 TGELVEIIKQVIPAPARRKGGHPAKRIFQAVRIAVNDELGAEEASLEQAIRLLKVNGRIS 242

Query: 247 VVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           V++FHSLEDR+VK  F   S  + +     +  +      + IT+K ++P++E++A N R
Sbjct: 243 VITFHSLEDRIVKSMFKEYSTVQDLPPGLPVIPDEFQPELKVITRKPILPSEEELAENNR 302

Query: 306 SRSAKLRAGMRTV 318
           SRSAKLR   +  
Sbjct: 303 SRSAKLRIAEKIR 315


>gi|226323690|ref|ZP_03799208.1| hypothetical protein COPCOM_01465 [Coprococcus comes ATCC 27758]
 gi|225207874|gb|EEG90228.1| hypothetical protein COPCOM_01465 [Coprococcus comes ATCC 27758]
          Length = 311

 Score =  398 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 109/308 (35%), Positives = 168/308 (54%), Gaps = 9/308 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            H  VLL++ I  LN  P  + +D T G GG++   C+      + I +D+D  A+    
Sbjct: 4   KHKSVLLDETIEGLNIKPDGIYVDGTLGGGGHAYEVCRRLNNKGSFIGIDQDAAAIEAAG 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             + D+ E+ ++ ++ +  ++  + +KG   VDG+V DLGVSS Q+D  DRGFS++   P
Sbjct: 64  TRLSDFGERVTIIRSNYCDMKSRLHEKGIDKVDGIVLDLGVSSYQLDTADRGFSYRVDAP 123

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM     +SA ++VN  +  DL RI+   GE+K A  IA  IV  R+  P +TT  L
Sbjct: 124 LDMRMDTRQTLSAKEIVNGYSEMDLFRIIRDYGEDKFAKNIAKHIVMAREKGPIETTGQL 183

Query: 192 SSLIQKTVYFSKNN-RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           + +I++++         HPA R+FQA+RI  N E+E L   L      L  GG + +++F
Sbjct: 184 AEIIRQSIPMKFQKMSGHPAKRTFQAIRIECNRELEVLRDSLDDMIDILNPGGRICIITF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  F              +      +  + ITKK ++P++E++  N RS+SA
Sbjct: 244 HSLEDRIVKGIFKKNENPCTCPSTFPVCVCGKVSKGKVITKKPILPSEEEMEVNSRSKSA 303

Query: 310 KLRAGMRT 317
           KLR   R 
Sbjct: 304 KLRIFERV 311


>gi|323706128|ref|ZP_08117697.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323534572|gb|EGB24354.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 310

 Score =  398 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 104/305 (34%), Positives = 163/305 (53%), Gaps = 8/305 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76
            H  VLL++ I  L   P  + +D T G GG+S    +      +IA+DRD  A+     
Sbjct: 4   KHESVLLQETIEYLEIKPDGIYVDGTLGGGGHSYEILRRLDKGKLIAIDRDMDAIKAASI 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++D+    +     +  ++D +   G+   DG + DLGVSS Q+D   RGFS+    PL
Sbjct: 64  RLKDF-NNTTYIHDNYKNIKDILKKCGIESIDGALLDLGVSSYQLDEAQRGFSYMHDAPL 122

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM   S I+A  VVN  +  ++ +++   GEE  A RIA  IV+ R+  P +TT +L 
Sbjct: 123 DMRMDKESDITAEYVVNNYSEDEIAKVISDYGEELWAKRIAKFIVEERRRKPIKTTFELV 182

Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+K +    +    HPA R+FQA+RI VN E++ L   +      +  GG + +++FH
Sbjct: 183 DIIKKAIPASKRRTGPHPAKRTFQAIRIEVNEELKGLGDAIADFVDVMNPGGRIAIITFH 242

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+VK  +          +++  +     V + ITKK +VP++ ++  N RSRSAKL
Sbjct: 243 SLEDRIVKNAYKKLEDPCTCPKNLPCTCGKKPVIKIITKKPIVPSEVEIKVNPRSRSAKL 302

Query: 312 RAGMR 316
           R   +
Sbjct: 303 RVAEK 307


>gi|210608682|ref|ZP_03287959.1| hypothetical protein CLONEX_00138 [Clostridium nexile DSM 1787]
 gi|210152939|gb|EEA83945.1| hypothetical protein CLONEX_00138 [Clostridium nexile DSM 1787]
          Length = 311

 Score =  398 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 108/310 (34%), Positives = 172/310 (55%), Gaps = 9/310 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           + +H  VLLE+ +  LN  P  + +D T G GG++   CK        I +D+D  A+  
Sbjct: 2   VFEHKSVLLEETVNGLNIKPDGIYVDGTLGGGGHAYEVCKHLNNKGRFIGIDQDEAAIEA 61

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
               + D+ E+ ++ ++ +  ++  + + G   VDG+V DLGVSS Q+D  +RGFS++  
Sbjct: 62  AGSRLIDFGERVTIVRSNYCDMKSKLQELGIDKVDGIVLDLGVSSYQLDTAERGFSYRVD 121

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM     ++A D+VN+ +  DL RI+   GE+K A  IA  IV  R+  P +TT 
Sbjct: 122 APLDMRMDRRQKMTAKDIVNEYSEMDLFRIIRDYGEDKFAKNIAKHIVLEREKGPIETTG 181

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L  +I++ +    +    HPA R+FQA+RI +N E+E L + L    + L   G + ++
Sbjct: 182 QLIEIIKRAIPMKFQKTAGHPAKRTFQAIRIELNRELEVLRESLDDMIELLNKDGRICII 241

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+VK  F           H  +    + +  + IT+K ++P+ E++  N RS+
Sbjct: 242 TFHSLEDRIVKGIFRKNENPCTCPPHFPVCVCGNESKGRVITRKPILPSAEELEENSRSK 301

Query: 308 SAKLRAGMRT 317
           SAKLR   RT
Sbjct: 302 SAKLRIFERT 311


>gi|317501224|ref|ZP_07959429.1| S-adenosyl-L-methionine-dependent methyltransferase mraW 2
           [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331090030|ref|ZP_08338919.1| ribosomal RNA small subunit methyltransferase H 2 [Lachnospiraceae
           bacterium 3_1_46FAA]
 gi|316897400|gb|EFV19466.1| S-adenosyl-L-methionine-dependent methyltransferase mraW 2
           [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330402492|gb|EGG82061.1| ribosomal RNA small subunit methyltransferase H 2 [Lachnospiraceae
           bacterium 3_1_46FAA]
          Length = 311

 Score =  398 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 104/307 (33%), Positives = 172/307 (56%), Gaps = 9/307 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
           +HV VLL + +  LN  P  V +DAT G GG++   C+        I +D+D  A+    
Sbjct: 4   EHVSVLLNETVDGLNVKPDGVYVDATLGGGGHAYEVCRRLGSKGRFIGIDQDADAIKAAG 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E ++ + E+ ++ ++ +  ++  + + GVD   G+V DLGVSS Q+D  +RGFS++   P
Sbjct: 64  ERLKGFGEKVTIIRSNYRDMKPQLQNIGVDKVDGIVIDLGVSSYQLDTAERGFSYRVDAP 123

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM     ++A D+VN+ +  +L R++   GE+K A  IA  IV+ R+  P +TT  L
Sbjct: 124 LDMRMDQRQKMTARDIVNEYSESELYRVIRDYGEDKFAKNIAKHIVEERRKNPIETTGQL 183

Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           + +I   +    +    HP+ R+FQA+RI +N+E++ L + L    + L  GG + +++F
Sbjct: 184 NEIISHAIPMKFRKTSGHPSKRTFQAIRIELNHELDVLRESLDDMIEMLNPGGRICIITF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  F           H  +      +  + IT+K ++P++ +   N RS+SA
Sbjct: 244 HSLEDRIVKSAFRKNENPCTCPSHFPVCVCGKISKGKVITRKPILPSEAETESNSRSKSA 303

Query: 310 KLRAGMR 316
           KLR   R
Sbjct: 304 KLRIFER 310


>gi|52080116|ref|YP_078907.1| S-adenosyl-methyltransferase MraW [Bacillus licheniformis ATCC
           14580]
 gi|52785490|ref|YP_091319.1| S-adenosyl-methyltransferase MraW [Bacillus licheniformis ATCC
           14580]
 gi|319646109|ref|ZP_08000339.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           sp. BT1B_CT2]
 gi|59799852|sp|Q65JY8|RSMH_BACLD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|52003327|gb|AAU23269.1| putative methyltransferase [Bacillus licheniformis ATCC 14580]
 gi|52347992|gb|AAU40626.1| YlxA [Bacillus licheniformis ATCC 14580]
 gi|317391859|gb|EFV72656.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           sp. BT1B_CT2]
          Length = 312

 Score =  398 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 113/313 (36%), Positives = 173/313 (55%), Gaps = 11/313 (3%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           + +H  VLL++ +  LN       +D T G  G+S            ++A D+D  A+  
Sbjct: 1   MFEHTTVLLKETVDGLNVKEDGTYVDCTLGGAGHSEYLLSQLSEKGKLVAFDQDETALRH 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E + DY+ Q    ++ F  L+D + + G   VDGV+FDLGVSS Q+D  +RGFS+   
Sbjct: 61  AKEKLADYEGQVVFIKSNFRYLKDRLNEIGITKVDGVLFDLGVSSPQLDTPERGFSYHHD 120

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM  S G+SA +VVN+   +DL +I    GEEK + +IA  I K R+ +P +TT 
Sbjct: 121 APLDMRMDQSAGLSAKEVVNEWPYEDLVKIFFKYGEEKFSKQIARKIEKAREQSPIETTG 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L  +I++ +   ++ +  HPA R FQA+RI VN+E+    + L  A + LK GG + V+
Sbjct: 181 QLVDIIKEAIPAPARRSGGHPAKRIFQAIRIAVNDELRVFEEALLQAIEVLKPGGRVSVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAV--RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           +FHSLEDR+ K  F   S          +IP    P   + + +K +  ++E++  N R+
Sbjct: 241 TFHSLEDRICKSTFKDMSSPPELPHGLPVIPKEFEPK-LKLVNRKPITASEEELEHNNRA 299

Query: 307 RSAKLRAGMRTVE 319
           RSAKLR   +  E
Sbjct: 300 RSAKLRIAEKARE 312


>gi|153938691|ref|YP_001390802.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum F str.
           Langeland]
 gi|263446093|sp|A7GDE2|RSMH_CLOBL RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|152934587|gb|ABS40085.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum F str.
           Langeland]
 gi|295318872|gb|ADF99249.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum F str.
           230613]
          Length = 309

 Score =  398 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 113/307 (36%), Positives = 164/307 (53%), Gaps = 9/307 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
            H+ VLLE+ I  LN     V +D T G GG+S+   K  S+   +I +D+D  A+   +
Sbjct: 4   KHISVLLEETIDSLNIKEDGVYVDCTLGGGGHSKEILKKLSHKGKLIGIDQDTSAIKAAK 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E ++DY E        F  +   + +     VDG++ DLGVSS Q+D   RGFS+ K  P
Sbjct: 64  EKLKDY-ENIIYVHNNFYNIDSILEELDIDKVDGIIMDLGVSSYQLDEASRGFSYMKDAP 122

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+     SA +VVN    ++L +IL   GEEK + +IA  IV++R   P +TT +L
Sbjct: 123 LDMRMNREENFSAYNVVNSYEEEELFKILKNYGEEKFSRKIARFIVEKRTENPIETTGEL 182

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             +I+K +        HPA R+FQA+RI VN E++ L + +  +   L   G L +++FH
Sbjct: 183 VEIIRKAIPAKFQREGHPAKRTFQAIRIEVNKELQILNKAIEDSVNRLNKDGRLSIITFH 242

Query: 252 SLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK  F              I         + ITKK + P++E+   N RSRSAK
Sbjct: 243 SLEDRIVKVKFKELEKPCTCPPSFPICVCGKEPQIKIITKKPIEPSKEEKEINSRSRSAK 302

Query: 311 LRAGMRT 317
           LR   + 
Sbjct: 303 LRVCRKI 309


>gi|170755383|ref|YP_001781092.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum B1 str.
           Okra]
 gi|263446089|sp|B1IKR0|RSMH_CLOBK RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|169120595|gb|ACA44431.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum B1 str.
           Okra]
          Length = 309

 Score =  398 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 112/307 (36%), Positives = 164/307 (53%), Gaps = 9/307 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
            H+ VLLE+ I  LN     V +D T G GG+S+   K  S+   +I +D+D  A+   +
Sbjct: 4   KHISVLLEETIDSLNIKEDGVYVDCTLGGGGHSKEILKKLSHKGKLIGIDQDTSAIKAAK 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E ++DY E        F  +   + +     VDG++ DLGVSS Q+D   RGFS+ K  P
Sbjct: 64  EKLKDY-ENIIYVHNNFYNIDSILEELDIDKVDGIIMDLGVSSYQLDEASRGFSYMKDAP 122

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+    +SA  V+N    ++L +IL   GEEK + +IA  IV++R   P +TT +L
Sbjct: 123 LDMRMNREENLSAYGVINNYEEEELFKILKNYGEEKFSRKIARFIVEKRTENPIETTGEL 182

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             +I+K +        HPA R+FQA+RI VN E++ L + +  +   L   G L +++FH
Sbjct: 183 VEIIRKAIPAKFQREGHPAKRTFQAIRIEVNKELQILNKAIEDSVNRLNKDGRLSIITFH 242

Query: 252 SLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK  F              I         + ITKK + P++E+   N RSRSAK
Sbjct: 243 SLEDRIVKVKFKELEKPCTCPPSFPICVCGKEPQIKIITKKPIEPSKEEKEINSRSRSAK 302

Query: 311 LRAGMRT 317
           LR   + 
Sbjct: 303 LRVCRKI 309


>gi|304404001|ref|ZP_07385663.1| S-adenosyl-methyltransferase MraW [Paenibacillus curdlanolyticus
           YK9]
 gi|304346979|gb|EFM12811.1| S-adenosyl-methyltransferase MraW [Paenibacillus curdlanolyticus
           YK9]
          Length = 317

 Score =  398 bits (1023), Expect = e-109,   Method: Composition-based stats.
 Identities = 111/316 (35%), Positives = 169/316 (53%), Gaps = 16/316 (5%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73
           +  HV VL+E+ I  L   P  + +D T G  G+S         G  +IA D+D +A   
Sbjct: 1   MFQHVTVLMEEAIDGLAVKPDGIYVDCTLGGAGHSSGIVSRLGGGGRLIAFDQDDWAHDN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDK----------GVDGVVFDLGVSSMQIDCGDR 123
            +  +    ++ +L ++ F  L+  + +            VDG++FDLGVSS Q+D  +R
Sbjct: 61  ARIRLASSMDKVTLIKSNFRYLEQRLLECEGVPQKDGIPQVDGILFDLGVSSPQLDEAER 120

Query: 124 GFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GFS+    PLDMRM     ++A D+VN  + +D+ RIL   GEEK A +IA  I   R +
Sbjct: 121 GFSYNHDAPLDMRMDRDIALTAGDIVNTWDERDIARILMEYGEEKFARKIAREIGAARAN 180

Query: 183 APFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
           AP +TT +L  LI+  +  + +    HPA R+FQALRI VN+E++     L  A + LK 
Sbjct: 181 APIETTGELVELIKAGIPAAARRTGGHPAKRTFQALRIAVNDELDAEEDALEQAIRCLKP 240

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDV 300
           GG   V++FHSLEDR+ K+ FA    K        +         + + +K +VP++E++
Sbjct: 241 GGRASVITFHSLEDRICKQTFAKYLEKCSCPPDFPLCVCGGQGALKLVNRKPIVPSEEEL 300

Query: 301 AFNRRSRSAKLRAGMR 316
             N R+RSAKLR   +
Sbjct: 301 EANPRARSAKLRVAEK 316


>gi|319938119|ref|ZP_08012517.1| S-adenosyl-methyltransferase mraW [Coprobacillus sp. 29_1]
 gi|319806640|gb|EFW03289.1| S-adenosyl-methyltransferase mraW [Coprobacillus sp. 29_1]
          Length = 315

 Score =  398 bits (1023), Expect = e-109,   Method: Composition-based stats.
 Identities = 106/311 (34%), Positives = 168/311 (54%), Gaps = 8/311 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74
           + +H+ VLLE+ I  LN     + +D T G GG+S+   K     ++   D+D  A+   
Sbjct: 1   MFNHISVLLEETIEGLNIKEDGIYVDCTLGGGGHSQEILKRLTTGHLYCFDQDQVAIEVA 60

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            + +    + F++  + F  ++  +   GV   DG+VFDLGVSS Q D G+RGFS+    
Sbjct: 61  AKRLSQISDHFTIIYSNFKNMKSELNQLGVQKVDGIVFDLGVSSPQFDDGERGFSYNYDA 120

Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM  +  +SA ++VN     +L +I     +EK + +IA AI + RQ  P +TT +
Sbjct: 121 KLDMRMDRNQTLSAYEIVNTYEFNELVKIFYKYADEKFSKQIARAIERHRQEKPIETTFE 180

Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I++ +   ++    HPA R+FQALRI VN+E+    + L  +   +  GG + V++
Sbjct: 181 LVEIIKEAIPAPARRKGGHPAKRTFQALRIAVNDELSVFEKALDDSLDCICVGGRIAVIT 240

Query: 250 FHSLEDRLVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLED++ K  F   + +  + +   I        FQ ITKK +V  ++++  N RS S
Sbjct: 241 FHSLEDKICKYTFNEVTKQPQLPMGMPIVPEYLKPRFQKITKKPIVAGEKELEENHRSHS 300

Query: 309 AKLRAGMRTVE 319
           AKLR   R  E
Sbjct: 301 AKLRIIERVYE 311


>gi|311068034|ref|YP_003972957.1| S-adenosyl-methyltransferase MraW [Bacillus atrophaeus 1942]
 gi|310868551|gb|ADP32026.1| S-adenosyl-methyltransferase MraW [Bacillus atrophaeus 1942]
          Length = 311

 Score =  398 bits (1022), Expect = e-109,   Method: Composition-based stats.
 Identities = 112/309 (36%), Positives = 170/309 (55%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H  VLL + +  L+  P    +D T G  G+S    +       +IA D+D  A+  
Sbjct: 1   MFQHKTVLLRETVDGLDIKPDGTYVDCTLGGAGHSTYLLQQLSEKGRLIAFDQDDTALQH 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E +  YK Q  L ++ F  L+D + ++G+   DGV+FDLGVSS Q+D  +RGFS+   
Sbjct: 61  AKEKLSGYKGQLILIKSNFRYLKDCLNEQGITEIDGVLFDLGVSSPQLDTPERGFSYHHD 120

Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM  S  ++A +VVN+   +DL RI    GEEK + +IA  I + R  +P QTT 
Sbjct: 121 APLDMRMDQSAPLTAKEVVNEWRYEDLVRIFFRYGEEKFSKQIARKIEEARSKSPIQTTG 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L  LI+  +   ++ +  HPA R FQA+RI VN+E++   + L  A + LK GG + V+
Sbjct: 181 QLVDLIKDAIPAPARRSGGHPAKRVFQAIRIAVNDELKVFEEALLQAIEVLKPGGRVSVI 240

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F   S    +     +         + IT+K +  ++E++  N R+R
Sbjct: 241 TFHSLEDRICKATFKEMSSLPELPPGLPVIPEEFEPELKLITRKPITASEEELEENNRAR 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRIAEK 309


>gi|197302579|ref|ZP_03167634.1| hypothetical protein RUMLAC_01308 [Ruminococcus lactaris ATCC
           29176]
 gi|197298477|gb|EDY33022.1| hypothetical protein RUMLAC_01308 [Ruminococcus lactaris ATCC
           29176]
          Length = 326

 Score =  398 bits (1022), Expect = e-109,   Method: Composition-based stats.
 Identities = 101/307 (32%), Positives = 170/307 (55%), Gaps = 9/307 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
           +H+ VLL + +  LN  P  + +DAT G GG++   C        +I +D+D  A+    
Sbjct: 19  EHISVLLYETVDGLNVKPDGIYVDATLGGGGHAYEVCSRLGSQGRLIGIDQDADAIRAAG 78

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + +  + E+ ++ ++ +  ++  +   G   VDG+  DLGVSS Q+D  +RGFS++   P
Sbjct: 79  KRLECFGEKVTIVRSNYCDMKQQLQKLGIDKVDGITVDLGVSSYQLDTAERGFSYRVDAP 138

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM     ++A D++N  +  +L R++   GE++ A  IA  IV  R+ AP +TT  L
Sbjct: 139 LDMRMDQRQKMTARDIINDYSESELYRVIRDYGEDRFAKNIAKHIVAERKKAPIETTGQL 198

Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           + +I   +    +    HP+ R+FQA+RI +N+E++ L   L    + L  GG L +++F
Sbjct: 199 NEIISHAIPMKVRKTSGHPSKRTFQAIRIELNHELDVLRDTLDDMIELLNPGGRLCIITF 258

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  F           H  +    + +  + IT+K ++P++E++  N RS+SA
Sbjct: 259 HSLEDRIVKSSFRKNENPCTCPSHFPVCVCGNVSKGKVITRKPILPSEEELEVNSRSKSA 318

Query: 310 KLRAGMR 316
           KLR   R
Sbjct: 319 KLRIFER 325


>gi|15895401|ref|NP_348750.1| S-adenosyl-methyltransferase MraW [Clostridium acetobutylicum ATCC
           824]
 gi|20139082|sp|Q97H81|RSMH_CLOAB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|15025123|gb|AAK80090.1|AE007714_3 Predicted S-adenosylmethionine-dependent methyltransferase,
           involved in cell envelope biogenesis YLXA B.subtilis
           ortholog [Clostridium acetobutylicum ATCC 824]
 gi|325509547|gb|ADZ21183.1| S-adenosyl-methyltransferase MraW [Clostridium acetobutylicum EA
           2018]
          Length = 312

 Score =  398 bits (1022), Expect = e-109,   Method: Composition-based stats.
 Identities = 108/308 (35%), Positives = 166/308 (53%), Gaps = 10/308 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
           +HVPVLLE+ I  LN     + +D T G  G+S    K       +I +D+D  A+    
Sbjct: 4   NHVPVLLEETIENLNIKEDGIYVDCTLGGAGHSSEILKRLSSKGRLIGIDQDKDALKAAS 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E +++YK   +     FS +++ + +     VDG++ DLGVSS Q+D  +RGFS+    P
Sbjct: 64  ERLKEYK-NLTFVHDNFSNIKNILEELKIDKVDGILADLGVSSYQLDEPERGFSYMNDAP 122

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+  S  SA DV+N  + + L  I+   GEEK A RIA  IV++R      TT +L
Sbjct: 123 LDMRMNRDSEFSAYDVINGYDEEKLYSIIKNYGEEKFAKRIAKFIVEKRSEEAINTTFEL 182

Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+  +    +    HPA R+FQA+RI VN E+E L + +  +   LK+ G + +++F
Sbjct: 183 VDIIKAAIPAKFRRQGPHPAKRTFQAIRIEVNQELEILNKTIEDSVDKLKSEGRICIITF 242

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  +       M  +   +         + IT+K +  +  ++ +N RSRSA
Sbjct: 243 HSLEDRIVKNKYRELQDPCMCPKDIPMCVCGKKPKIKIITRKPIEASSYELEYNPRSRSA 302

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 303 KLRVAEKI 310


>gi|225028107|ref|ZP_03717299.1| hypothetical protein EUBHAL_02377 [Eubacterium hallii DSM 3353]
 gi|224954577|gb|EEG35786.1| hypothetical protein EUBHAL_02377 [Eubacterium hallii DSM 3353]
          Length = 315

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 102/306 (33%), Positives = 170/306 (55%), Gaps = 9/306 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H  ++LE+VI  L   P  + +D T G  G+S    K       +I +D+D  A+    +
Sbjct: 5   HKSIMLEEVIESLAIKPNGIYVDGTLGGAGHSSEIVKRLGEDGRLIGIDQDGEAIEAATK 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++ YK++ ++ ++ ++Q+++ + D G   VDG++ DLGVSS Q+D  +RGF++++  PL
Sbjct: 65  RLKPYKDKVTIVRSNYAQMKEVLRDLGIPKVDGILLDLGVSSYQLDNAERGFTYREDVPL 124

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM      +A D+VN  +  +L  I+   GE+K A  IA  IV+ RQ  P +TT  L 
Sbjct: 125 DMRMDQRQTKTAKDIVNDYSEMELYHIIRNYGEDKFAKNIAKHIVQARQKTPIETTGQLI 184

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  +    +    HPA ++FQA+RI +N+E++ L   L      L   G + +++FH
Sbjct: 185 EVIKAAIPKKVRATGGHPAKKTFQAIRIELNHELDVLKNNLEDMIDLLNDEGRIAIITFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK  F +     +      +      +  + IT+K +VP +E++  N RS+SAK
Sbjct: 245 SLEDRIVKNIFRTSERPCICPPEFPVCVCGRVSKGKVITRKPIVPGKEELEENSRSKSAK 304

Query: 311 LRAGMR 316
           LR   R
Sbjct: 305 LRVFER 310


>gi|86358458|ref|YP_470350.1| S-adenosyl-methyltransferase MraW [Rhizobium etli CFN 42]
 gi|123511371|sp|Q2K6B3|RSMH_RHIEC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|86282560|gb|ABC91623.1| S-adenosyl-methyltransferase protein [Rhizobium etli CFN 42]
          Length = 341

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 178/323 (55%), Positives = 227/323 (70%), Gaps = 1/323 (0%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+PVLL +V+A L+PAPGK+ILD TFGAGGYS +    G+ VIALDRDP A++ GQ  + 
Sbjct: 19  HIPVLLNEVLAALSPAPGKLILDGTFGAGGYSAAILAAGAEVIALDRDPSAIAAGQAMVA 78

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
            +  +  L  A FS L D+ P  G+DGVV D+GVSSMQID  +RGFSFQKSGPLDMRMS 
Sbjct: 79  AHAGRLRLIHAQFSNLGDHAPQGGLDGVVLDIGVSSMQIDEPERGFSFQKSGPLDMRMSA 138

Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199
           +G+SA+DVVN+A V DL RI   LGEE QA RIAHAI KRR+  PF+TT+DL+ LI+   
Sbjct: 139 TGVSAADVVNRAKVADLIRIFHFLGEENQAPRIAHAIEKRREEKPFETTRDLAGLIELVT 198

Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259
                ++IHPATR FQALRIFVN+E+ ELAQ L +AE+ LK GG L+VV+FHSLEDR+VK
Sbjct: 199 PRKMKDKIHPATRVFQALRIFVNDELGELAQALFAAERTLKPGGRLVVVTFHSLEDRIVK 258

Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT-V 318
           KFF+ R+G+    RH+  ++   A F +I K +V  ++ +   N R+RSAKLRAG+RT  
Sbjct: 259 KFFSDRAGRATGSRHLPAAHERAATFTAIGKPMVSASEAEAEANPRARSAKLRAGLRTDA 318

Query: 319 ERSIEDDSFVHLPRLPTLSQFRG 341
                D S    P L +L +  G
Sbjct: 319 AAEAADMSLFGFPNLASLGKLGG 341


>gi|2149901|gb|AAC45631.1| unknown [Enterococcus faecalis]
          Length = 319

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 104/312 (33%), Positives = 170/312 (54%), Gaps = 11/312 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  V +D TFG  G+S           ++ A D+D  A++  + 
Sbjct: 8   HYTVLLKETVDGLQVKPDGVYVDCTFGGAGHSEYLLTQLNEHGHLYAFDQDQKALAHAKT 67

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            ++ Y  K Q +  ++ F  +++ + + GV   DG+++DLGVSS Q+D  +RGFS+ +  
Sbjct: 68  RLQKYVDKGQVTFIKSNFRNIKEELAEHGVFHVDGILYDLGVSSPQLDEAERGFSYHQDA 127

Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM     ++A +VVN  +  +L +I    GEEK + +IA  I + R+  P +TT +
Sbjct: 128 PLDMRMDQDAPLTAREVVNTYSYSELVKIFFRYGEEKFSKQIAREIERVREKQPIETTGE 187

Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I+  +   ++    HPA R FQA+RI VN+E+  + + L  A   L   G + V++
Sbjct: 188 LVEIIKTAIPAPARRKGGHPAKRIFQAIRIAVNDELGAVEESLEQAIDLLAKNGRISVIT 247

Query: 250 FHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK  F   S  + +     +         + IT+K ++P+  +++ N RSRS
Sbjct: 248 FHSLEDRIVKTMFKEYSTVQDLPPGIPVVPEEFQPELKVITRKPILPSDSELSENNRSRS 307

Query: 309 AKLRAGMRTVER 320
           AKLR   +   R
Sbjct: 308 AKLRIAEKIKSR 319


>gi|222149144|ref|YP_002550101.1| S-adenosyl-methyltransferase MraW [Agrobacterium vitis S4]
 gi|263446656|sp|B9JY62|RSMH_AGRVS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|221736130|gb|ACM37093.1| S-adenosyl-methyltransferase MraW [Agrobacterium vitis S4]
          Length = 341

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 175/322 (54%), Positives = 229/322 (71%), Gaps = 1/322 (0%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+PVLLE VI  L P+ GKVILD TFGAGGY+ +    G++VIALDRDP A++ GQ  + 
Sbjct: 19  HIPVLLEPVIEALEPSAGKVILDGTFGAGGYTSAILDTGADVIALDRDPNAIAGGQAMVA 78

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
               + +L    FS L ++ P+ G+DG+V D+GVSSMQID  +RGFSFQ++GPLDMRMS 
Sbjct: 79  ARAGRLTLHHTRFSTLDNFAPEGGLDGIVLDIGVSSMQIDEAERGFSFQRNGPLDMRMSG 138

Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199
           +G+SA+DVVN+A V DL RI G LGEEKQ+ RIA AI KRR + PFQTT+DL+ +I+   
Sbjct: 139 TGVSAADVVNRAKVGDLIRIFGFLGEEKQSGRIARAIEKRRVNHPFQTTRDLAGMIEIVT 198

Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259
                ++IHPATR FQALR+FVN+E+ ELA+ L +AE+ALK GG L+VV+FHSLEDR+VK
Sbjct: 199 PRKAKDKIHPATRVFQALRVFVNDELGELAEALFAAERALKPGGRLVVVTFHSLEDRIVK 258

Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319
           KFF+ RSGK    RHM  +   PA F+ + K +V  T+E+   N R+RSAKLRAG+RT  
Sbjct: 259 KFFSDRSGKAAGSRHMPMAFERPATFEPVGKGMVTATEEEAEINPRARSAKLRAGIRTAH 318

Query: 320 RSI-EDDSFVHLPRLPTLSQFR 340
            ++  D S   LP L  + +  
Sbjct: 319 PAMKADFSIFDLPDLAEIERLG 340


>gi|257885174|ref|ZP_05664827.1| methyltransferase [Enterococcus faecium 1,231,501]
 gi|261206514|ref|ZP_05921214.1| methyltransferase [Enterococcus faecium TC 6]
 gi|289565424|ref|ZP_06445873.1| methylase MraW [Enterococcus faecium D344SRF]
 gi|294614715|ref|ZP_06694617.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium E1636]
 gi|294618987|ref|ZP_06698482.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium E1679]
 gi|257821026|gb|EEV48160.1| methyltransferase [Enterococcus faecium 1,231,501]
 gi|260079224|gb|EEW66915.1| methyltransferase [Enterococcus faecium TC 6]
 gi|289162753|gb|EFD10604.1| methylase MraW [Enterococcus faecium D344SRF]
 gi|291592453|gb|EFF24060.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium E1636]
 gi|291594648|gb|EFF26030.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium E1679]
          Length = 319

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 108/313 (34%), Positives = 173/313 (55%), Gaps = 10/313 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  V+L++ +  LN  P  V +D T G  G+S           ++ A D+D  A+ 
Sbjct: 3   ETFQHYTVMLKETVDGLNIKPDGVYVDCTLGGAGHSEYLLSQLSSKGHLYAFDQDQKAID 62

Query: 73  CGQETMRDYKEQ--FSLFQATFSQLQDYVPDK--GVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             +  +  Y EQ   +  +A F +L++ + +    VDG+++DLGVSS Q+D  +RGFS+ 
Sbjct: 63  HAKLRLASYVEQGMVTFIKANFRELEERLSEHVDKVDGILYDLGVSSPQLDEAERGFSYH 122

Query: 129 KSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           +  PLDMRM  S  +SA  V+N+ +  +L +I    GEEK + +IA  I + R++ P QT
Sbjct: 123 QDAPLDMRMDQSAPLSAYHVINEYSYHELVKIFFRYGEEKFSKQIAREIERVRKTKPIQT 182

Query: 188 TQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T +L  +I++ +   ++    HPA R FQA+RI VN+E+      L  A + LK  G + 
Sbjct: 183 TGELVEIIKQVIPAPARRKGGHPAKRIFQAVRIAVNDELGAEEASLEQAIRLLKVNGRIS 242

Query: 247 VVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           V++FHSLEDR+VK  F   S  + +     +  +      + IT+K ++P++E++A N R
Sbjct: 243 VITFHSLEDRIVKSMFKEYSTVQDLPPGLPVIPDEFQPELKVITRKPILPSEEELAENNR 302

Query: 306 SRSAKLRAGMRTV 318
           SRSAKLR   +  
Sbjct: 303 SRSAKLRIAEKIR 315


>gi|222086453|ref|YP_002544986.1| S-adenosyl-methyltransferase protein [Agrobacterium radiobacter
           K84]
 gi|263446643|sp|B9JH59|RSMH_AGRRK RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|221723901|gb|ACM27057.1| S-adenosyl-methyltransferase protein [Agrobacterium radiobacter
           K84]
          Length = 341

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 180/323 (55%), Positives = 229/323 (70%), Gaps = 1/323 (0%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+PVLL++V+  L PAPGK+ILD TFGAGGY+ +    G+++IALDRDP A++ GQ  + 
Sbjct: 19  HIPVLLKEVLEALAPAPGKLILDGTFGAGGYTSAILAAGADMIALDRDPTAIAAGQSMVA 78

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
            +  + +L Q+ FSQL D+ P  G+DGVV D+GVSSMQ+D  +RGFSF K+GPLDMRMS 
Sbjct: 79  AHAGRLTLIQSQFSQLADHAPQGGLDGVVLDIGVSSMQLDEAERGFSFSKNGPLDMRMSA 138

Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199
           SG+SA+DVVN A + DL RI   LGEEKQA RIAHAI KRR  APF TT+DL+ LI+   
Sbjct: 139 SGVSAADVVNHAKLADLIRIFVFLGEEKQAPRIAHAIEKRRAEAPFVTTRDLAGLIEIVT 198

Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259
                ++IHPATR FQALRIFVN+E+ ELAQ L +AE+ALK GG L+VV+FHSLEDR+VK
Sbjct: 199 PRKAKDKIHPATRVFQALRIFVNDELGELAQALFAAERALKPGGRLVVVTFHSLEDRIVK 258

Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT-V 318
           KFFA RSG+    RHM   +   A F  I K ++  +  +   N R+RSAKLRAG+RT V
Sbjct: 259 KFFADRSGRAGGSRHMPMVHERLATFDPIGKPMISASDAEAEINPRARSAKLRAGLRTSV 318

Query: 319 ERSIEDDSFVHLPRLPTLSQFRG 341
           +    D S   LP L +L +  G
Sbjct: 319 QAEAADLSIFDLPNLASLGKLGG 341


>gi|126649733|ref|ZP_01721969.1| S-adenosyl-methyltransferase MraW [Bacillus sp. B14905]
 gi|126593452|gb|EAZ87397.1| S-adenosyl-methyltransferase MraW [Bacillus sp. B14905]
          Length = 316

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 109/316 (34%), Positives = 170/316 (53%), Gaps = 9/316 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSC 73
           + DH  VLL++ +  LN  P  V +D T G  G+S            +I  D+D  A+  
Sbjct: 1   MFDHTTVLLKETVDGLNIDPDGVYVDCTLGGAGHSEYLVHQLSDKGRLICFDQDMTAIEN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +  +  Y E+ +   + F  L++ +   G   VDG+++DLGVSS Q+D  +RGFS+   
Sbjct: 61  AKIRLAPYIERVTFIHSNFRYLKEELLAHGFEQVDGILYDLGVSSPQLDTPERGFSYHHD 120

Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM  +  ++A +VVNQ   +DL RI    GEEK + ++A  I + R+SAP +TT 
Sbjct: 121 APLDMRMDQTATLTAFEVVNQWAYEDLVRIFFRYGEEKFSKQVARKIEEARKSAPIETTG 180

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L  LI++ +  + +    HPA R FQA+RI VN+E+      L  A   +  GG + V+
Sbjct: 181 QLVELIKEGIPAAARRKGGHPAKRIFQAIRIAVNDELGAAEDSLVDAIDMINVGGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K  F   S    +     +  +      + I++K ++P+ E++  N R+R
Sbjct: 241 TFHSLEDRLCKTIFKEASSLPELPPNLPVIPDDMKPTLKLISRKPILPSDEELEVNNRAR 300

Query: 308 SAKLRAGMRTVERSIE 323
           SAKLR   +  ++  E
Sbjct: 301 SAKLRVVEKINDKGRE 316


>gi|160933348|ref|ZP_02080736.1| hypothetical protein CLOLEP_02193 [Clostridium leptum DSM 753]
 gi|156867225|gb|EDO60597.1| hypothetical protein CLOLEP_02193 [Clostridium leptum DSM 753]
          Length = 308

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 120/303 (39%), Positives = 174/303 (57%), Gaps = 7/303 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77
           H+PVLL + I  L   P  V +D T G GG+S +  K      +IA+D+DP A++   + 
Sbjct: 5   HLPVLLRETIEGLAVKPDGVYVDGTAGGGGHSEAIAKRLSTGRLIAIDQDPDAIAAVTKR 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           + DY    ++ +A FSQ+++ V   GVD   GV+ D+GVSS Q+D  +RGFS+    PLD
Sbjct: 65  LADYPG-VTVCRANFSQMEEVVRSLGVDSVDGVLMDIGVSSHQLDTPERGFSYHSDAPLD 123

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRMS  G  A D+VN    ++L  IL   GEE+ + RIA  I   R+ AP +TT  L+ +
Sbjct: 124 MRMSQEGPGAGDLVNSLPWQELAEILSRYGEERFSKRIAQGIAAAREQAPIETTFQLAEI 183

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           ++     +     HPA ++FQALRI VN E++ L++GL +A   LK GG L V++FHSLE
Sbjct: 184 VKNAYPAAARRDGHPARKTFQALRIAVNGELDRLSEGLDAAFSLLKPGGRLAVITFHSLE 243

Query: 255 DRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           DRLVK+  AS            +         + +T+K V  ++ ++  N RSRSAKLR 
Sbjct: 244 DRLVKRRMASWCQGCTCPPDFPVCVCGKTPSAELVTRKPVKASETELEKNPRSRSAKLRV 303

Query: 314 GMR 316
            +R
Sbjct: 304 CIR 306


>gi|89099599|ref|ZP_01172474.1| S-adenosyl-methyltransferase MraW [Bacillus sp. NRRL B-14911]
 gi|89085752|gb|EAR64878.1| S-adenosyl-methyltransferase MraW [Bacillus sp. NRRL B-14911]
          Length = 310

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 113/309 (36%), Positives = 169/309 (54%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           + DH  VLLE+ +A L+  P  V +D T G  G+S            + A D+D  A+  
Sbjct: 1   MFDHKTVLLEETVAGLDIKPDGVYVDCTMGGAGHSELILTQLSSRGKLYAFDQDETAIEN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130
            QE +  Y ++ ++ ++ F  L++ +   GV   DGV++DLGVSS Q+D  +RGFS+   
Sbjct: 61  AQEKLSKYGDKITIIKSNFLHLKEELEKAGVTEVDGVLYDLGVSSPQLDTPERGFSYHHD 120

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM     +SA +VVN    +DL RI    GEEK + +IA  I   R+ AP +TT 
Sbjct: 121 APLDMRMDKDASLSAYEVVNDWPYEDLVRIFFRYGEEKFSKQIARKIEAAREKAPIETTS 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L  LI+  +   ++    HPA R FQA+RI VN+E+    + L  A   LK GG + V+
Sbjct: 181 QLVELIKDGIPAPARRKGGHPAKRVFQAIRIAVNDELGVFEKSLEQAIDILKPGGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F   S    +     I  +    V + + +K ++P++E++  N R+R
Sbjct: 241 TFHSLEDRICKATFKKASETPPLPPGLPIIPDEFKPVLKLVARKPILPSEEELEENNRAR 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRVAEK 309


>gi|29375571|ref|NP_814725.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis V583]
 gi|29343032|gb|AAO80795.1| conserved hypothetical protein TIGR00006 [Enterococcus faecalis
           V583]
          Length = 319

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 103/312 (33%), Positives = 169/312 (54%), Gaps = 11/312 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  V +D T G  G+S           ++ A D+D  A++  + 
Sbjct: 8   HYTVLLKETVDGLQVKPDGVYVDCTLGGAGHSEYLLTQLNEHGHLYAFDQDQKALAHAKT 67

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            ++ Y  K Q +  ++ F  +++ + + GV   DG+++DLGVSS Q+D  +RGFS+ +  
Sbjct: 68  RLQKYVDKGQVTFIKSNFRNIKEELAEHGVFHVDGILYDLGVSSPQLDEAERGFSYHQDA 127

Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM     ++A +VVN  +  +L +I    GEEK + +IA  I + R+  P +TT +
Sbjct: 128 PLDMRMDQDAPLTAREVVNTYSYSELVKIFFRYGEEKFSKQIAREIERVREKQPIETTGE 187

Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I+  +   ++    HPA R FQA+RI VN+E+  + + L  A   L   G + V++
Sbjct: 188 LVEIIKTAIPAPARRKGGHPAKRIFQAIRIAVNDELGAVEESLEQAIDLLAKNGRISVIT 247

Query: 250 FHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK  F   S  + +     +         + IT+K ++P+  +++ N RSRS
Sbjct: 248 FHSLEDRIVKTMFKEYSTVQDLPPGIPVVPEEFQPELKVITRKPILPSDSELSENNRSRS 307

Query: 309 AKLRAGMRTVER 320
           AKLR   +   R
Sbjct: 308 AKLRIAEKIKSR 319


>gi|167037220|ref|YP_001664798.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320115639|ref|YP_004185798.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|262825860|sp|B0K8J9|RSMH_THEP3 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|166856054|gb|ABY94462.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319928730|gb|ADV79415.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 308

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 114/304 (37%), Positives = 171/304 (56%), Gaps = 8/304 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77
           H  VLL++ I  LN  P  + +D T G GG+S    K      +IA+DRD  A+   +E 
Sbjct: 5   HKSVLLKETIEYLNIKPEGIYVDGTLGGGGHSEEILKRLTTGKLIAIDRDLDAIKASKER 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +++YK         F  +++ +       VDG++ DLGVSS Q++   RGFS+ K  P+D
Sbjct: 65  LKNYK-NAEYINDNFKNIKEILKSLNIDKVDGILLDLGVSSYQLEEVKRGFSYMKDAPMD 123

Query: 135 MRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM  +   SA DVVN+ + ++L R++   GEEK ASRIA  IVK R+    +TT  L  
Sbjct: 124 MRMDKNSPFSAYDVVNKYSQQELERVIREYGEEKWASRIAKFIVKEREKGEIKTTFQLVE 183

Query: 194 LIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +I+  V   ++    HPA R+FQA+RI VN E++ L + +    + L+  G + +++FHS
Sbjct: 184 IIKNAVPASARREGPHPAKRTFQAIRIEVNEELKGLDKAIEDMVEVLRGKGRIAIITFHS 243

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK  F           +M  +     V + ITKK V+P++E++  N RSRSAKLR
Sbjct: 244 LEDRIVKNTFKKLENPCTCPPNMPCTCGKKPVVKIITKKPVLPSKEEIETNSRSRSAKLR 303

Query: 313 AGMR 316
              +
Sbjct: 304 VAEK 307


>gi|28211297|ref|NP_782241.1| S-adenosyl-methyltransferase MraW [Clostridium tetani E88]
 gi|42559471|sp|Q894B4|RSMH_CLOTE RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|28203737|gb|AAO36178.1| S-adenosyl-methyltransferase mraW [Clostridium tetani E88]
          Length = 310

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 109/307 (35%), Positives = 175/307 (57%), Gaps = 10/307 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQ 75
            H+ VLL++ I  LN     + +D T G  G+S    K       +I +D+D  A+    
Sbjct: 4   KHISVLLDECIEGLNIKENGIYVDCTLGGAGHSSEILKNLSKEGKLIGIDQDEEALKAAS 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E +++Y E      + F  ++D + +     VDG++ DLGVSS Q+D   RGFS+ ++ P
Sbjct: 64  EKLKEY-ENVLYKHSNFYHIKDILEELEVGKVDGILMDLGVSSYQLDEKSRGFSYMQNAP 122

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+  S + A +VVN  +   L RI+   GEE+ A RI++ IV+ R++   +TT +L
Sbjct: 123 LDMRMNKKSSLDAYEVVNFYDESKLARIIKDYGEERFAKRISNFIVESRENKKIETTGEL 182

Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I++ +    +    HPA R+FQA+RI VN E+E L + +  + K+LK+GG + +++F
Sbjct: 183 VDIIKRAIPAKFRREGPHPAKRTFQAIRIEVNGELEILNKAIEDSVKSLKSGGRIAIITF 242

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  F       +  +   I +     + + IT+K + P++E+V  N RSRSA
Sbjct: 243 HSLEDRIVKNKFKELEDPCICPKDFPICTCGKEPLVKIITRKPIDPSKEEVEINPRSRSA 302

Query: 310 KLRAGMR 316
           KLR   +
Sbjct: 303 KLRIAEK 309


>gi|255971443|ref|ZP_05422029.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Enterococcus faecalis T1]
 gi|255974058|ref|ZP_05424644.1| mraW [Enterococcus faecalis T2]
 gi|256617913|ref|ZP_05474759.1| mraW [Enterococcus faecalis ATCC 4200]
 gi|256761747|ref|ZP_05502327.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Enterococcus faecalis T3]
 gi|256957082|ref|ZP_05561253.1| mraW [Enterococcus faecalis DS5]
 gi|256960173|ref|ZP_05564344.1| mraW [Enterococcus faecalis Merz96]
 gi|256962585|ref|ZP_05566756.1| mraW [Enterococcus faecalis HIP11704]
 gi|257077878|ref|ZP_05572239.1| mraW [Enterococcus faecalis JH1]
 gi|257081242|ref|ZP_05575603.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis E1Sol]
 gi|257083900|ref|ZP_05578261.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis Fly1]
 gi|257086348|ref|ZP_05580709.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Enterococcus faecalis D6]
 gi|257089398|ref|ZP_05583759.1| S-adenosyl-methyltransferase mraW [Enterococcus faecalis CH188]
 gi|257415608|ref|ZP_05592602.1| mraW [Enterococcus faecalis AR01/DG]
 gi|257418579|ref|ZP_05595573.1| S-adenosyl-methyltransferase mraW [Enterococcus faecalis T11]
 gi|257421238|ref|ZP_05598228.1| S-adenosyl-methyltransferase mraW [Enterococcus faecalis X98]
 gi|294780578|ref|ZP_06745941.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis PC1.1]
 gi|300859663|ref|ZP_07105751.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TUSoD
           Ef11]
 gi|30179792|sp|O07104|RSMH_ENTFA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|255962461|gb|EET94937.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Enterococcus faecalis T1]
 gi|255966930|gb|EET97552.1| mraW [Enterococcus faecalis T2]
 gi|256597440|gb|EEU16616.1| mraW [Enterococcus faecalis ATCC 4200]
 gi|256682998|gb|EEU22693.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Enterococcus faecalis T3]
 gi|256947578|gb|EEU64210.1| mraW [Enterococcus faecalis DS5]
 gi|256950669|gb|EEU67301.1| mraW [Enterococcus faecalis Merz96]
 gi|256953081|gb|EEU69713.1| mraW [Enterococcus faecalis HIP11704]
 gi|256985908|gb|EEU73210.1| mraW [Enterococcus faecalis JH1]
 gi|256989272|gb|EEU76574.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis E1Sol]
 gi|256991930|gb|EEU79232.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis Fly1]
 gi|256994378|gb|EEU81680.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Enterococcus faecalis D6]
 gi|256998210|gb|EEU84730.1| S-adenosyl-methyltransferase mraW [Enterococcus faecalis CH188]
 gi|257157436|gb|EEU87396.1| mraW [Enterococcus faecalis ARO1/DG]
 gi|257160407|gb|EEU90367.1| S-adenosyl-methyltransferase mraW [Enterococcus faecalis T11]
 gi|257163062|gb|EEU93022.1| S-adenosyl-methyltransferase mraW [Enterococcus faecalis X98]
 gi|294452405|gb|EFG20844.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis PC1.1]
 gi|300850481|gb|EFK78230.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TUSoD
           Ef11]
 gi|323480228|gb|ADX79667.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis 62]
          Length = 318

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 103/312 (33%), Positives = 169/312 (54%), Gaps = 11/312 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  V +D T G  G+S           ++ A D+D  A++  + 
Sbjct: 7   HYTVLLKETVDGLQVKPDGVYVDCTLGGAGHSEYLLTQLNEHGHLYAFDQDQKALAHAKT 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            ++ Y  K Q +  ++ F  +++ + + GV   DG+++DLGVSS Q+D  +RGFS+ +  
Sbjct: 67  RLQKYVDKGQVTFIKSNFRNIKEELAEHGVFHVDGILYDLGVSSPQLDEAERGFSYHQDA 126

Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM     ++A +VVN  +  +L +I    GEEK + +IA  I + R+  P +TT +
Sbjct: 127 PLDMRMDQDAPLTAREVVNTYSYSELVKIFFRYGEEKFSKQIAREIERVREKQPIETTGE 186

Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I+  +   ++    HPA R FQA+RI VN+E+  + + L  A   L   G + V++
Sbjct: 187 LVEIIKTAIPAPARRKGGHPAKRIFQAIRIAVNDELGAVEESLEQAIDLLAKNGRISVIT 246

Query: 250 FHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK  F   S  + +     +         + IT+K ++P+  +++ N RSRS
Sbjct: 247 FHSLEDRIVKTMFKEYSTVQDLPPGIPVVPEEFQPELKVITRKPILPSDSELSENNRSRS 306

Query: 309 AKLRAGMRTVER 320
           AKLR   +   R
Sbjct: 307 AKLRIAEKIKSR 318


>gi|291550007|emb|CBL26269.1| S-adenosyl-methyltransferase MraW [Ruminococcus torques L2-14]
          Length = 311

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 103/307 (33%), Positives = 169/307 (55%), Gaps = 9/307 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
           +HV VLL + +  LN  P  + +DAT G GG++   C        +I +D+D  A+    
Sbjct: 4   EHVSVLLHETVDGLNVKPDGIYVDATLGGGGHAYEVCTKLGEQGRLIGIDQDADAIKAAG 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + +  + E+ ++ ++ +  ++  + + G   VDG+  DLGVSS Q+D  +RGFS++   P
Sbjct: 64  KRLEGFGEKVTIIRSNYCDMKPRLHEIGIDKVDGITVDLGVSSYQLDTAERGFSYRVDAP 123

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM     ++A D+VN  +  +L R++   GE++ A  IA  IV  R   P +TT  L
Sbjct: 124 LDMRMDQRQKMTARDIVNDYSESELYRVIRDYGEDRFAKNIAKHIVAERAKGPIETTGQL 183

Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           + +I   +    +    HP+ R+FQALRI +N+E++ L   L      L  GG L +++F
Sbjct: 184 NEIISHAIPMKIQKTSGHPSKRTFQALRIELNHELDVLRDTLDDMIDLLNPGGRLCIITF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  F       +   H  +    + +  + IT+K ++P++E++  N RS+SA
Sbjct: 244 HSLEDRIVKSSFRKNENPCICPSHFPVCVCGNVSKGKVITRKPILPSEEELTVNSRSKSA 303

Query: 310 KLRAGMR 316
           KLR   R
Sbjct: 304 KLRIFER 310


>gi|227555099|ref|ZP_03985146.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis HH22]
 gi|229548930|ref|ZP_04437655.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis ATCC
           29200]
 gi|293382538|ref|ZP_06628472.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis R712]
 gi|293387861|ref|ZP_06632400.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis S613]
 gi|307268069|ref|ZP_07549457.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX4248]
 gi|307272003|ref|ZP_07553269.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0855]
 gi|307275472|ref|ZP_07556614.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX2134]
 gi|307278960|ref|ZP_07560019.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0860]
 gi|307289409|ref|ZP_07569363.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0109]
 gi|312904551|ref|ZP_07763709.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0635]
 gi|312906859|ref|ZP_07765856.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis DAPTO 512]
 gi|312952739|ref|ZP_07771601.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0102]
 gi|312978886|ref|ZP_07790612.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis DAPTO 516]
 gi|227175767|gb|EEI56739.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis HH22]
 gi|229305951|gb|EEN71947.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis ATCC
           29200]
 gi|291080086|gb|EFE17450.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis R712]
 gi|291082708|gb|EFE19671.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis S613]
 gi|306499664|gb|EFM69027.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0109]
 gi|306504347|gb|EFM73558.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0860]
 gi|306507860|gb|EFM76988.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX2134]
 gi|306511298|gb|EFM80302.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0855]
 gi|306515710|gb|EFM84237.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX4248]
 gi|310627113|gb|EFQ10396.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis DAPTO 512]
 gi|310629255|gb|EFQ12538.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0102]
 gi|310632064|gb|EFQ15347.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0635]
 gi|311288323|gb|EFQ66879.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis DAPTO 516]
 gi|315031725|gb|EFT43657.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0017]
 gi|315034218|gb|EFT46150.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0027]
 gi|315144374|gb|EFT88390.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX2141]
 gi|315149512|gb|EFT93528.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0012]
 gi|315153065|gb|EFT97081.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0031]
 gi|315156838|gb|EFU00855.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0043]
 gi|315157624|gb|EFU01641.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0312]
 gi|315162946|gb|EFU06963.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0645]
 gi|315165146|gb|EFU09163.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX1302]
 gi|315168045|gb|EFU12062.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX1341]
 gi|315171926|gb|EFU15943.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX1342]
 gi|315173297|gb|EFU17314.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX1346]
 gi|315574267|gb|EFU86458.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0309B]
 gi|315577395|gb|EFU89586.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0630]
 gi|315581578|gb|EFU93769.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0309A]
 gi|327534575|gb|AEA93409.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis OG1RF]
 gi|329574359|gb|EGG55931.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX1467]
          Length = 322

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 103/312 (33%), Positives = 169/312 (54%), Gaps = 11/312 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  V +D T G  G+S           ++ A D+D  A++  + 
Sbjct: 11  HYTVLLKETVDGLQVKPDGVYVDCTLGGAGHSEYLLTQLNEHGHLYAFDQDQKALAHAKT 70

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            ++ Y  K Q +  ++ F  +++ + + GV   DG+++DLGVSS Q+D  +RGFS+ +  
Sbjct: 71  RLQKYVDKGQVTFIKSNFRNIKEELAEHGVFHVDGILYDLGVSSPQLDEAERGFSYHQDA 130

Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM     ++A +VVN  +  +L +I    GEEK + +IA  I + R+  P +TT +
Sbjct: 131 PLDMRMDQDAPLTAREVVNTYSYSELVKIFFRYGEEKFSKQIAREIERVREKQPIETTGE 190

Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I+  +   ++    HPA R FQA+RI VN+E+  + + L  A   L   G + V++
Sbjct: 191 LVEIIKTAIPAPARRKGGHPAKRIFQAIRIAVNDELGAVEESLEQAIDLLAKNGRISVIT 250

Query: 250 FHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK  F   S  + +     +         + IT+K ++P+  +++ N RSRS
Sbjct: 251 FHSLEDRIVKTMFKEYSTVQDLPPGIPVVPEEFQPELKVITRKPILPSDSELSENNRSRS 310

Query: 309 AKLRAGMRTVER 320
           AKLR   +   R
Sbjct: 311 AKLRIAEKIKSR 322


>gi|322805771|emb|CBZ03336.1| rRNAsmall subunit methyltransferase H [Clostridium botulinum H04402
           065]
          Length = 309

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 113/307 (36%), Positives = 164/307 (53%), Gaps = 9/307 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
            H+ VLLE+ I  LN     V +D T G GG+S+   K  S+   +I +D+D  A+   +
Sbjct: 4   KHISVLLEETIDSLNIKEDGVYVDCTLGGGGHSKEILKKLSHKGKLIGIDQDTSAIKAAK 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E ++DY E        F  +   + +     VDG++ DLGVSS Q+D   RGFS+ K  P
Sbjct: 64  EKLKDY-ENIIYVHNNFYNIDSILEELDIDKVDGIIMDLGVSSYQLDEASRGFSYMKDAP 122

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+     SA +VVN    ++L +IL   GEEK + +IA  IV++R   P +TT +L
Sbjct: 123 LDMRMNREENFSAYNVVNSYEEEELFKILKNYGEEKFSRKIARFIVEKRTENPIETTGEL 182

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             +I+K +        HPA R+FQA+RI VN E++ L + +  +   L   G L +++FH
Sbjct: 183 VEIIRKAIPAKFQREGHPAKRTFQAIRIEVNKELQILNKAIEDSVNRLNKDGRLSIITFH 242

Query: 252 SLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK  F              I         + ITKK + P++E+   N RSRSAK
Sbjct: 243 SLEDRIVKVKFKELEKPCTCPPSFPICVCRKEPQIKIITKKPIEPSKEEKEINSRSRSAK 302

Query: 311 LRAGMRT 317
           LR   + 
Sbjct: 303 LRVCRKI 309


>gi|256852642|ref|ZP_05558013.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis T8]
 gi|256711987|gb|EEU27024.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis T8]
          Length = 319

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 102/309 (33%), Positives = 168/309 (54%), Gaps = 11/309 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  V +D T G  G+S           ++ A D+D  A++  + 
Sbjct: 8   HYTVLLKETVDGLQVKPDGVYVDCTLGGAGHSEYLLTQLNEHGHLYAFDQDQKALAHAKT 67

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            ++ Y  K Q +  ++ F  +++ + + GV   DG+++DLGVSS Q+D  +RGFS+ +  
Sbjct: 68  RLQKYVDKGQVTFIKSNFRNIKEELAEHGVFHVDGILYDLGVSSPQLDEAERGFSYHQDA 127

Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM     ++A +VVN  +  +L +I    GEEK + +IA  I + R+  P +TT +
Sbjct: 128 PLDMRMDQDAPLTAREVVNTYSYSELVKIFFRYGEEKFSKQIAREIERVREKQPIETTGE 187

Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I+  +   ++    HPA R FQA+RI VN+E+  + + L  A   L   G + V++
Sbjct: 188 LVEIIKTAIPAPARRKGGHPAKRIFQAIRIAVNDELGAVEESLEQAIDLLAKNGRISVIT 247

Query: 250 FHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK  F   S  + +     +         + IT+K ++P+  +++ N RSRS
Sbjct: 248 FHSLEDRIVKTMFKEYSTVQDLPPGIPVVPEEFQPELKVITRKPILPSDSELSENNRSRS 307

Query: 309 AKLRAGMRT 317
           AKLR   + 
Sbjct: 308 AKLRIAEKI 316


>gi|227550453|ref|ZP_03980502.1| S-adenosyl-methyltransferase [Enterococcus faecium TX1330]
 gi|257897144|ref|ZP_05676797.1| methyltransferase [Enterococcus faecium Com12]
 gi|293377368|ref|ZP_06623572.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium PC4.1]
 gi|227180354|gb|EEI61326.1| S-adenosyl-methyltransferase [Enterococcus faecium TX1330]
 gi|257833709|gb|EEV60130.1| methyltransferase [Enterococcus faecium Com12]
 gi|292644060|gb|EFF62166.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium PC4.1]
          Length = 319

 Score =  396 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 106/313 (33%), Positives = 172/313 (54%), Gaps = 10/313 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  V+L++ +  LN     V +D T G  G+S           ++ A D+D  A+ 
Sbjct: 3   ETFQHYTVMLKETVDGLNIKSDGVYVDCTLGGAGHSEYLLSQLSSKGHLYAFDQDQKAID 62

Query: 73  CGQETMRDYKEQ--FSLFQATFSQLQDYVPDK--GVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             +  +  Y EQ   +  +A F +L++ + +    VDG+++DLGVSS Q+D  +RGFS+ 
Sbjct: 63  HAKLRLASYVEQGMVTFIKANFRELEERLSEYVDKVDGILYDLGVSSPQLDEAERGFSYH 122

Query: 129 KSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           +  PLDMRM  S  ++A  V+N+ +  +L +I    GEEK + +IA  I + R++ P QT
Sbjct: 123 QDAPLDMRMDQSAPLTAYHVINEYSYHELVKIFFRYGEEKFSKQIAREIERVRKTKPIQT 182

Query: 188 TQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T +L  +I++ +   ++    HPA R FQA+RI VN+E+      L  A + LK  G + 
Sbjct: 183 TGELVEIIKQVIPAPARRKGGHPAKRIFQAVRIAVNDELGAEETSLEQAIRLLKVNGRIS 242

Query: 247 VVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           V++FHSLEDR+VK  F   S  + +     +  +      + IT+K ++P++E++A N R
Sbjct: 243 VITFHSLEDRIVKSMFKEYSTVQDLPPGLPVIPDEFQPELKVITRKPILPSEEELAENNR 302

Query: 306 SRSAKLRAGMRTV 318
           SRSAKLR   +  
Sbjct: 303 SRSAKLRIAEKIR 315


>gi|187779894|ref|ZP_02996367.1| hypothetical protein CLOSPO_03490 [Clostridium sporogenes ATCC
           15579]
 gi|187773519|gb|EDU37321.1| hypothetical protein CLOSPO_03490 [Clostridium sporogenes ATCC
           15579]
          Length = 309

 Score =  396 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 115/307 (37%), Positives = 164/307 (53%), Gaps = 9/307 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
            H+ VLLE+ I  LN     + +D T G GG+S+   K  S+   +I +D+D  A+   +
Sbjct: 4   KHISVLLEETIDSLNIKEDGIYVDCTLGGGGHSKEILKKLSHKGKLIGIDQDTSALKAAK 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E ++DY E        F  +   + +   + VDG+V DLGVSS Q+D   RGFS+ K  P
Sbjct: 64  ERLKDY-ENVIYVHNNFYNIDSILEELDIEKVDGIVMDLGVSSYQLDEASRGFSYMKDAP 122

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+     SA DVVN    ++L +IL   GEEK + +IA  IV+RR     +TT +L
Sbjct: 123 LDMRMNRDENFSAYDVVNSYGEEELFKILKNYGEEKFSRKIARFIVERRTEKSIETTGEL 182

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             +I+K +        HPA R+FQA+RI VN E++ L + +  +   L   G L +++FH
Sbjct: 183 VEIIKKAIPAKFQREGHPAKRTFQAIRIEVNKELQILNKAIEDSVNRLNKDGRLSIITFH 242

Query: 252 SLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK  F              I         + ITKK + P++E+   N RSRSAK
Sbjct: 243 SLEDRIVKVKFKELEKPCTCPPSFPICVCGKKPQIKIITKKPMEPSKEEKEINSRSRSAK 302

Query: 311 LRAGMRT 317
           LR   R 
Sbjct: 303 LRVCRRI 309


>gi|163941658|ref|YP_001646542.1| S-adenosyl-methyltransferase MraW [Bacillus weihenstephanensis
           KBAB4]
 gi|229061524|ref|ZP_04198868.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus AH603]
 gi|229168659|ref|ZP_04296381.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus AH621]
 gi|263447259|sp|A9VU80|RSMH_BACWK RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|163863855|gb|ABY44914.1| S-adenosyl-methyltransferase MraW [Bacillus weihenstephanensis
           KBAB4]
 gi|228614815|gb|EEK71918.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus AH621]
 gi|228717758|gb|EEL69408.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus AH603]
          Length = 310

 Score =  396 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 111/309 (35%), Positives = 168/309 (54%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73
           +  HV VLL++ +  L+  P    +D T G GG+S         G  +IA D+D  A+  
Sbjct: 1   MFKHVTVLLKETVDGLDIKPSGTYVDCTLGGGGHSSYLLSQLTDGGKLIAFDQDEIAIQN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E    Y EQF   ++ F  L + + + G   VDG++FDLGVSS Q+D  +RGFS+   
Sbjct: 61  AKEKFSSYGEQFVTVKSNFRYLSEKLHELGITEVDGILFDLGVSSPQLDTPERGFSYHHD 120

Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM     ++A DVVN  + + L RI    GEEK + +I   I   R++   +TT 
Sbjct: 121 APLDMRMDQDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQITRKIEAYRENKAIETTG 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  LI++ +   ++    HPA R FQA+RI VN+E++   + L SA   +K GG + V+
Sbjct: 181 ELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIDMVKPGGRVSVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F   S    +     I  +      + IT+K ++P+  ++  N R+R
Sbjct: 241 TFHSLEDRICKTTFKRNSTTPQLPQGLPIIPDEFKPKLKLITRKPILPSDIELEENNRAR 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRIAEK 309


>gi|229546836|ref|ZP_04435561.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX1322]
 gi|307290049|ref|ZP_07569973.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0411]
 gi|312901052|ref|ZP_07760343.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0470]
 gi|229308001|gb|EEN73988.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX1322]
 gi|306498891|gb|EFM68385.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0411]
 gi|311291878|gb|EFQ70434.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0470]
 gi|315029678|gb|EFT41610.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX4000]
          Length = 322

 Score =  396 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 102/309 (33%), Positives = 168/309 (54%), Gaps = 11/309 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  V +D T G  G+S           ++ A D+D  A++  + 
Sbjct: 11  HYTVLLKETVDGLQVKPDGVYVDCTLGGAGHSEYLLTQLNEHGHLYAFDQDQKALAHAKT 70

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            ++ Y  K Q +  ++ F  +++ + + GV   DG+++DLGVSS Q+D  +RGFS+ +  
Sbjct: 71  RLQKYVDKGQVTFIKSNFRNIKEELAEHGVFHVDGILYDLGVSSPQLDEAERGFSYHQDA 130

Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM     ++A +VVN  +  +L +I    GEEK + +IA  I + R+  P +TT +
Sbjct: 131 PLDMRMDQDAPLTAREVVNTYSYSELVKIFFRYGEEKFSKQIAREIERVREKQPIETTGE 190

Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I+  +   ++    HPA R FQA+RI VN+E+  + + L  A   L   G + V++
Sbjct: 191 LVEIIKTAIPAPARRKGGHPAKRIFQAIRIAVNDELGAVEESLEQAIDLLAKNGRISVIT 250

Query: 250 FHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK  F   S  + +     +         + IT+K ++P+  +++ N RSRS
Sbjct: 251 FHSLEDRIVKTMFKEYSTVQDLPPGIPVVPEEFQPELKVITRKPILPSDSELSENNRSRS 310

Query: 309 AKLRAGMRT 317
           AKLR   + 
Sbjct: 311 AKLRIAEKI 319


>gi|307266529|ref|ZP_07548062.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306918448|gb|EFN48689.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 308

 Score =  396 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 113/304 (37%), Positives = 171/304 (56%), Gaps = 8/304 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQET 77
           H  VLL++ I  LN  P  + +D T G GG+S    K      +IA+DRD  A+   +E 
Sbjct: 5   HKSVLLKETIEYLNIKPEGIYVDGTLGGGGHSEEILKRLPTGKLIAIDRDLDAIKASKER 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +++YK         F  +++ +       VDG++ DLGVSS Q++  +RGFS+ K  PLD
Sbjct: 65  LKNYK-NVEYINDNFKNIKEILKSLDIDKVDGILLDLGVSSYQLEEVERGFSYMKDAPLD 123

Query: 135 MRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM  +   SA DVVN+ + ++L R++   GEEK ASRIA  I K R+    +TT  L  
Sbjct: 124 MRMDKNSPFSAYDVVNKYSQQELERVIREYGEEKWASRIAKFIAKEREKGEIKTTFQLVE 183

Query: 194 LIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +I+  V   ++    HPA R+FQA+RI VN E++ L + +    + L+  G + +++FHS
Sbjct: 184 IIKNAVPASARREGPHPAKRTFQAIRIEVNEELKGLDKAIEDMVEVLRGKGRIAIITFHS 243

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK  F           +M  +     + + ITKK V+P++E++  N RSRSAKLR
Sbjct: 244 LEDRIVKNTFKKLENPCTCPHNMPCTCGKEPLIKIITKKPVLPSKEEIETNSRSRSAKLR 303

Query: 313 AGMR 316
              +
Sbjct: 304 VAEK 307


>gi|227517912|ref|ZP_03947961.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0104]
 gi|227074666|gb|EEI12629.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX0104]
          Length = 322

 Score =  396 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 102/309 (33%), Positives = 168/309 (54%), Gaps = 11/309 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  V +D T G  G+S           ++ A D+D  A++  + 
Sbjct: 11  HYTVLLKETVDGLQVKPDGVYVDCTLGGAGHSEYLLTQLNEHGHLYAFDQDQKALAHAKT 70

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            ++ Y  K Q +  ++ F  +++ + + GV   DG+++DLGVSS Q+D  +RGFS+ +  
Sbjct: 71  RLQKYVDKGQVTFIKSNFRNIKEELAEHGVFHVDGILYDLGVSSPQLDEAERGFSYHQDA 130

Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM     ++A +VVN  +  +L +I    GEEK + +IA  I + R+  P +TT +
Sbjct: 131 PLDMRMDQDAPLTAREVVNTYSYGELVKIFFRYGEEKFSKQIAREIERVREKQPIETTGE 190

Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I+  +   ++    HPA R FQA+RI VN+E+  + + L  A   L   G + V++
Sbjct: 191 LVEIIKTAIPAPARRKGGHPAKRIFQAIRIAVNDELGAVEESLEQAIDLLAKNGRISVIT 250

Query: 250 FHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK  F   S  + +     +         + IT+K ++P+  +++ N RSRS
Sbjct: 251 FHSLEDRIVKTMFKEYSTVQDLPPGIPVVPEEFQPELKVITRKPILPSDSELSENNRSRS 310

Query: 309 AKLRAGMRT 317
           AKLR   + 
Sbjct: 311 AKLRIAEKI 319


>gi|205373089|ref|ZP_03225894.1| S-adenosyl-methyltransferase MraW [Bacillus coahuilensis m4-4]
          Length = 311

 Score =  396 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 107/311 (34%), Positives = 168/311 (54%), Gaps = 9/311 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73
           + +H  VLL + +  L   P  + +D T G  G+S         G ++ A D+D  A+  
Sbjct: 1   MFNHTTVLLRETVDELKIKPNGIYVDCTLGGAGHSEYLLSQLGEGGHLFAFDQDETALRH 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
             E +  Y ++ +  ++ F  L+  + +    GVDG+++DLGVSS Q+D  +RGFS+   
Sbjct: 61  AAEKLNAYSDKVTYVKSNFRYLKSELTNLGVMGVDGILYDLGVSSPQLDTPERGFSYHHD 120

Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM   G +SA +VVN+ + + L RI    GEEK + +IA  I   R+  P +TT 
Sbjct: 121 APLDMRMDLQGAVSAYEVVNEWSYEKLVRIFFQYGEEKFSKQIARKIEAAREVNPIETTG 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  LI++ +   ++    HPA R FQA+RI VN+E+       +   + L  GG + V+
Sbjct: 181 ELVELIKEGIPAPARRKGGHPAKRIFQAIRIAVNDELTAFEDSAKDGIQLLHKGGRMSVI 240

Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F   S G  +     I    +    + +T+K ++P+ E++A N RSR
Sbjct: 241 TFHSLEDRICKNLFKEYSKGPELPPGLPIIPEGYEPKLKIVTRKPILPSDEELAHNNRSR 300

Query: 308 SAKLRAGMRTV 318
           SAKLR   +  
Sbjct: 301 SAKLRVAEKNR 311


>gi|310659206|ref|YP_003936927.1| s-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Clostridium sticklandii DSM 519]
 gi|308825984|emb|CBH22022.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Clostridium sticklandii]
          Length = 310

 Score =  396 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 111/306 (36%), Positives = 173/306 (56%), Gaps = 8/306 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76
            HV VLL + + +L+  P  + +D T G  G+S    K      +I  D+D  A+S  +E
Sbjct: 4   KHVTVLLNEAVDILDIKPDGIYVDGTLGGAGHSLEIVKKLTSGKLICFDQDINAISAAKE 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++D+ ++  L  + F  L++ +   G+   DG + DLGVSS Q+D  +RGFS+ +  PL
Sbjct: 64  KLKDFMDKTILVHSNFENLREELNKLGIETIDGFLVDLGVSSHQLDVPERGFSYMQDAPL 123

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  +  +SA DVVN  +  +L R++   GEE  ++RIA  IV+RR + P +TT +L 
Sbjct: 124 DMRMDNNAELSAYDVVNTYSEAELKRVIKDYGEENWSARIAKIIVERRTTMPIRTTFELV 183

Query: 193 SLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             I+  +     +   HPA R+FQA+RI VN E++ + + L +A   +  GG+L V++FH
Sbjct: 184 DAIKAAIPKKMRDENQHPAKRTFQAIRIEVNRELDVIEKTLLAAVDMMNEGGVLAVITFH 243

Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK  F              +       V + IT+K ++P++ +V  N RSRSAK
Sbjct: 244 SLEDRIVKNVFKKLQYSCTCPPEFPVCICNSKQVVEIITRKPILPSENEVEMNPRSRSAK 303

Query: 311 LRAGMR 316
           LRA  +
Sbjct: 304 LRAARK 309


>gi|326391684|ref|ZP_08213209.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter ethanolicus
           JW 200]
 gi|325992262|gb|EGD50729.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 308

 Score =  396 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 113/304 (37%), Positives = 171/304 (56%), Gaps = 8/304 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77
           H  VLL++ I  LN  P  + +D T G GG+S    K      +IA+DRD  A+   +E 
Sbjct: 5   HKSVLLKETIEYLNIKPEGIYVDGTLGGGGHSEEILKRLTTGKLIAIDRDLDAIKASKER 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +++YK         F  +++ +       VDG++ DLGVSS Q++  +RGFS+ K  PLD
Sbjct: 65  LKNYK-NVEYINDNFKNIKEILKSLDIDKVDGILLDLGVSSYQLEEVERGFSYMKDAPLD 123

Query: 135 MRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM  +   SA DVVN+ + ++L R++   GEEK ASRIA  I K R+    +TT  L  
Sbjct: 124 MRMDKNSPFSAYDVVNKYSQQELERVIREYGEEKWASRIAKFIAKEREKGEIKTTFQLVE 183

Query: 194 LIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +I+  V   ++    HPA R+FQA+RI VN E++ L + +    + L+  G + +++FHS
Sbjct: 184 IIKNAVPASARREGPHPAKRTFQAIRIEVNEELKGLDKAIEDMVEVLRGKGRIAIITFHS 243

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK  F           +M  +     + + ITKK V+P++E++  N RSRSAKLR
Sbjct: 244 LEDRIVKNTFKKLENPCTCPHNMPCTCGKEPLIKIITKKPVLPSKEEIETNSRSRSAKLR 303

Query: 313 AGMR 316
              +
Sbjct: 304 VAEK 307


>gi|110800523|ref|YP_696548.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens ATCC
           13124]
 gi|110803229|ref|YP_699148.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens SM101]
 gi|168206081|ref|ZP_02632086.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens E str.
           JGS1987]
 gi|168210772|ref|ZP_02636397.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens B str.
           ATCC 3626]
 gi|168215224|ref|ZP_02640849.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens CPE str.
           F4969]
 gi|168215494|ref|ZP_02641119.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens NCTC
           8239]
 gi|169343521|ref|ZP_02864520.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens C str.
           JGS1495]
 gi|122958788|sp|Q0TP92|RSMH_CLOP1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|123047275|sp|Q0SRV9|RSMH_CLOPS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|110675170|gb|ABG84157.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens ATCC
           13124]
 gi|110683730|gb|ABG87100.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens SM101]
 gi|169298081|gb|EDS80171.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens C str.
           JGS1495]
 gi|170662388|gb|EDT15071.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens E str.
           JGS1987]
 gi|170711095|gb|EDT23277.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens B str.
           ATCC 3626]
 gi|170713370|gb|EDT25552.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens CPE str.
           F4969]
 gi|182382153|gb|EDT79632.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens NCTC
           8239]
          Length = 310

 Score =  396 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 111/307 (36%), Positives = 169/307 (55%), Gaps = 10/307 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            HV VLL++ I  LN     + +D T G  G+S    K       +I  D+D  A+    
Sbjct: 4   KHVSVLLDECINALNIKEDGIYVDCTLGGAGHSSEIVKRLSSDGRLIGFDQDKDALKAAG 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E ++DYK   +   + F  + D + D    GVDG++ DLGVSS Q+D G+RGFS+ +  P
Sbjct: 64  ERLKDYK-NVTYVHSNFYAIYDVLTDLGIDGVDGILMDLGVSSYQLDNGERGFSYMQDAP 122

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+  +  SA ++VN  + ++L RI+   GEEK A RIA  IVK R+    +TT +L
Sbjct: 123 LDMRMNRENEFSAYEIVNTYSEEELYRIIKEYGEEKFAKRIASFIVKNREEKNIETTLEL 182

Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+  +    +    HPA R+FQA+RI VN E+E +++ +    K L  GG + +++F
Sbjct: 183 VEIIKAAIPAKARREGPHPAKRTFQAIRIEVNKELEIISKTILDGVKKLNKGGRMAIITF 242

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  F   +          +         + I++K +  ++E++ FN RSRSA
Sbjct: 243 HSLEDRIVKNTFKELANPCTCPSEFPVCVCNRKPEVKLISRKPIEASKEELEFNPRSRSA 302

Query: 310 KLRAGMR 316
           KLR   +
Sbjct: 303 KLRIIEK 309


>gi|182417987|ref|ZP_02949294.1| S-adenosyl-methyltransferase MraW [Clostridium butyricum 5521]
 gi|237667344|ref|ZP_04527328.1| S-adenosyl-methyltransferase MraW [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|182378158|gb|EDT75693.1| S-adenosyl-methyltransferase MraW [Clostridium butyricum 5521]
 gi|237655692|gb|EEP53248.1| S-adenosyl-methyltransferase MraW [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 310

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 105/308 (34%), Positives = 166/308 (53%), Gaps = 10/308 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
            HV VLL + I  LN     + +D T G  G+S    K  S    +I +D+D  A+   +
Sbjct: 4   KHVSVLLNECIDGLNIKEDGIYVDCTLGGAGHSSHILKHLSKNGLLIGIDQDTDALKAAK 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E ++DY +      + F  +   + + G   VDG++ DLGVSS Q+D  +RGFS+ +  P
Sbjct: 64  ERLKDY-DNVKYVHSNFYNIDSILNELGIEKVDGILMDLGVSSYQLDNAERGFSYMQDAP 122

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+  +  SA  ++N  + ++L +I+   GEEK A RIA+ IV RR   P +TT +L
Sbjct: 123 LDMRMNRDNDFSAYSIINDYSEEELYKIIRDYGEEKFAKRIANFIVNRRAEKPIETTFEL 182

Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+  +    +    HPA R+FQA+RI VN+E++ L + +      L   G + +++F
Sbjct: 183 VDIIKAAIPAKARREGPHPAKRTFQAIRIEVNSELKILNKTIEDGVNRLNKDGRMAIITF 242

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  F          R   +       + + + KK + P++E++  N RSRSA
Sbjct: 243 HSLEDRIVKLKFRELENPCTCPREFPMCICGKKPLVKVLNKKGIAPSKEEIEENPRSRSA 302

Query: 310 KLRAGMRT 317
           K+R   + 
Sbjct: 303 KVRVVEKV 310


>gi|297588285|ref|ZP_06946928.1| S-adenosyl-methyltransferase MraW [Finegoldia magna ATCC 53516]
 gi|297573658|gb|EFH92379.1| S-adenosyl-methyltransferase MraW [Finegoldia magna ATCC 53516]
          Length = 312

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 104/309 (33%), Positives = 163/309 (52%), Gaps = 9/309 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76
            HVP+LL + I  LN   GK+ +D T G  G+SR   K      +I  D+D  A++  +E
Sbjct: 4   KHVPILLNECIENLNIRDGKIYVDCTVGGAGHSREIAKRIGNGKLICFDQDEDALTVAKE 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +++Y ++    +  F  ++  + + G   VDG++ D+GVSS QID   RGFS+     L
Sbjct: 64  RLKEYGDKVIFIKDNFKNIKSDLQNIGIEKVDGILMDIGVSSYQIDEDSRGFSYMHDAVL 123

Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  +   +A D+VN  + +DL  I+    EEK A RIA  I   R+  P  TT +L 
Sbjct: 124 DMRMDQTNPITAKDIVNTYSQEDLENIIFKYSEEKWAKRIAEFICNEREVKPINTTFELV 183

Query: 193 SLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
            +I+K +        + H A ++FQA+RI VN E++ L Q +      L   G + +++F
Sbjct: 184 EVIEKAIPKKVRMNQKGHSAKKTFQAIRIEVNKELDVLEQAVGDCIDLLNPEGRICIITF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLED++ K  F  R    +      +    H    + IT+K + P+ E++  N R+RSA
Sbjct: 244 HSLEDKICKDIFKQRQKGCICPPEIPVCVCNHKPEIKIITRKPIEPSTEELKQNSRARSA 303

Query: 310 KLRAGMRTV 318
           KLR   + +
Sbjct: 304 KLRVAEKII 312


>gi|227874385|ref|ZP_03992569.1| S-adenosylmethionine-dependent methyltransferase involved in cell
           envelope biogenesis [Oribacterium sinus F0268]
 gi|227839793|gb|EEJ50239.1| S-adenosylmethionine-dependent methyltransferase involved in cell
           envelope biogenesis [Oribacterium sinus F0268]
          Length = 311

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 102/307 (33%), Positives = 166/307 (54%), Gaps = 9/307 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H  +++E+ +  LN     + +D T G GG+S    +       +I +D+D  A+    E
Sbjct: 5   HKSIMVEECMEGLNIKKDGIYVDGTLGGGGHSFHILERLGEKGQLIGIDQDEDAILAATE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++ + +Q  + +  +    + +     + VDG++ DLGVSS Q D  +RGFS++   PL
Sbjct: 65  RLKPFAKQLHIIRDNYEHFPEILSSLSIEKVDGILLDLGVSSHQFDEEERGFSYRFDAPL 124

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM      SA D+VN  +   L  I+   GE+K A  IA  IV  RQ  P +TT++L+
Sbjct: 125 DMRMDQRQDFSAKDLVNSYSESSLFHIIRDYGEDKFAKNIAKHIVLARQEKPIETTKELA 184

Query: 193 SLIQKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I   +         HPA R+FQA+RI +N E+E L   L+S  +AL  GG + ++SFH
Sbjct: 185 EIISHAIPMKFRLQGGHPAKRTFQAIRIALNRELEVLENSLKSMIEALNPGGRICIISFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK+ F       +      + +    ++ + I++K + P++E++  N R++SAK
Sbjct: 245 SLEDRIVKRSFKEAENPCICPPDFPVCTCGRKSLGKVISRKAICPSEEEMEENPRAKSAK 304

Query: 311 LRAGMRT 317
           LR   RT
Sbjct: 305 LRIFERT 311


>gi|315147940|gb|EFT91956.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX4244]
          Length = 322

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 102/312 (32%), Positives = 168/312 (53%), Gaps = 11/312 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  V +D T G  G+S           ++ A D+D  A++  + 
Sbjct: 11  HYTVLLKETVDGLQVKPDGVYVDCTLGGAGHSEYLLTQLNEHGHLYAFDQDQKALAHAKT 70

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            ++ Y  K Q +  ++ F  +++ + + GV   DG+++DLGVSS Q+D  +RGFS+ +  
Sbjct: 71  RLQKYVDKGQVTFIKSNFRNIKEELAEHGVFHVDGILYDLGVSSPQLDEAERGFSYHQDA 130

Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM     ++A +VVN  +  +L +I    GEEK + +I   I + R+  P +TT +
Sbjct: 131 PLDMRMDQDAPLTAREVVNTYSYSELVKIFFRYGEEKFSKQITREIERVREKQPIETTGE 190

Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I+  +   ++    HPA R FQA+RI VN+E+  + + L  A   L   G + V++
Sbjct: 191 LVEIIKTAIPAPARRKGGHPAKRIFQAIRIAVNDELGAVEESLEQAIDLLAKNGRISVIT 250

Query: 250 FHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK  F   S  + +     +         + IT+K ++P+  +++ N RSRS
Sbjct: 251 FHSLEDRIVKTMFKEYSTVQDLPPGIPVVPEEFQPELKVITRKPILPSDSELSENNRSRS 310

Query: 309 AKLRAGMRTVER 320
           AKLR   +   R
Sbjct: 311 AKLRIAEKIKSR 322


>gi|39936600|ref|NP_948876.1| S-adenosyl-methyltransferase MraW [Rhodopseudomonas palustris
           CGA009]
 gi|42559427|sp|P60398|RSMH_RHOPA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|39650456|emb|CAE28979.1| Bacterial methyltransferase [Rhodopseudomonas palustris CGA009]
          Length = 332

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 149/332 (44%), Positives = 198/332 (59%), Gaps = 8/332 (2%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAV 71
           +  +   H+PVL  + + LL P  G + +D TFGAGGY+R   +  GS VIA+DRDP A+
Sbjct: 1   MKPSDARHIPVLGPEAVGLLAPRAGGIYVDGTFGAGGYTRLILETAGSRVIAIDRDPSAI 60

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQ 128
           + G + + +   + +L Q  FS L D    +G   VDGVV D+GVSSMQ+D  +RGFSF+
Sbjct: 61  AGGADLVTEAGGRLTLVQDRFSNLADVCAAQGAATVDGVVMDIGVSSMQLDQAERGFSFR 120

Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             GPLDMRM   G SA+DVV +A+  DL  I+ I GEE+ +  +A AIV  R   P  TT
Sbjct: 121 FDGPLDMRMGRDGPSAADVVARASETDLANIIYIFGEERYSRHVARAIVAARSETPITTT 180

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           + L+ ++ K V  +K   IHPATR+FQ LRIFVN E++EL Q L +AE+ LK  G L VV
Sbjct: 181 KALADIVAKVV-RAKPGEIHPATRTFQGLRIFVNEELDELHQALDAAERVLKPSGRLAVV 239

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDR+VK F A RS      RH+         F  ++K+ +V    +VA N R+RS
Sbjct: 240 SFHSLEDRIVKTFLAERSKTGGGSRHLPEVAQAAPSFTLLSKRPIVAGDAEVAANPRARS 299

Query: 309 AKLRAGMRTVERSIEDDSFVHLPRLPTLSQFR 340
           AKLR   RT   +        LP  PTL+   
Sbjct: 300 AKLRGAERTESPAHAAGD---LPGWPTLASVM 328


>gi|229918544|ref|YP_002887190.1| S-adenosyl-methyltransferase MraW [Exiguobacterium sp. AT1b]
 gi|263447045|sp|C4L5T9|RSMH_EXISA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|229469973|gb|ACQ71745.1| S-adenosyl-methyltransferase MraW [Exiguobacterium sp. AT1b]
          Length = 310

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 110/308 (35%), Positives = 168/308 (54%), Gaps = 8/308 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74
           + +H  VL  + I  LN  P  V +D T G  G+S    K      + A D+D  A++  
Sbjct: 1   MFEHETVLKMESIEGLNIKPDGVYVDCTLGGAGHSEEIAKRLTTGQLYAFDQDDVALAHA 60

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +E +  Y+ + +  ++ F  L++ +  +GV   DGV+FDLGVSS Q+D  +RGFS+    
Sbjct: 61  KERLAPYEGRVTFIKSNFVHLKEELAQRGVTKVDGVLFDLGVSSPQLDEAERGFSYNYDA 120

Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  S   SA  VVN+ +  +L RI    GEEK + +IA  I + R   P +TT +
Sbjct: 121 PLDMRMDRSRDFSAYHVVNEWSFGELARIFFTYGEEKFSKQIARKIEQARADKPIETTFE 180

Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  LI++ +   ++    HPA R+FQA+RI VN+E+    + ++ A   L   G + V++
Sbjct: 181 LVDLIKEAIPAPARRKGGHPAKRTFQAIRIAVNDELNVFDRAVQDAIDLLAVNGRICVIT 240

Query: 250 FHSLEDRLVKKFFASRSGKVM-AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+ K+ F  RS          +         + IT+K +V ++ ++  NRRSRS
Sbjct: 241 FHSLEDRICKQVFKERSQHPPLPPGLPVIPKEFEPELKLITRKPIVASEGELEDNRRSRS 300

Query: 309 AKLRAGMR 316
           AKLR   +
Sbjct: 301 AKLRVAEK 308


>gi|160895291|ref|ZP_02076062.1| hypothetical protein CLOL250_02850 [Clostridium sp. L2-50]
 gi|156862984|gb|EDO56415.1| hypothetical protein CLOL250_02850 [Clostridium sp. L2-50]
          Length = 314

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 105/307 (34%), Positives = 176/307 (57%), Gaps = 9/307 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H  VLL++ I  LN  P  V +D T G  G+SR   K      ++I +D+D  A++  +
Sbjct: 4   KHTSVLLDETIENLNIKPNGVYMDGTLGGAGHSREIAKRLGSDGHLIGIDQDGEAIATAK 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E + +Y ++ ++ +  +   +  + +     VDG++ DLGVSS Q+D  DRGF+++   P
Sbjct: 64  ERLAEYGDRITVVRDNYQNFKSILDELNISQVDGILLDLGVSSYQLDNADRGFTYRVDAP 123

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM      +A D+VN    ++L  IL   GEE+ A  IA+ IVK R++   +TT++L
Sbjct: 124 LDMRMDDRQTKTAKDIVNGYTEQELFHILKEYGEERFAKSIAYHIVKYRENKEIETTEEL 183

Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           + +I+ ++    +N + HP+ ++FQA+RI +N+E+E L   +      LK GG L +++F
Sbjct: 184 NDIIRGSIPAKVRNAQGHPSKQTFQAIRIELNHELEVLTNSIDGMIDCLKPGGRLCIITF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  F       +      + +    +  + IT+K ++PT+E++  N RS+SA
Sbjct: 244 HSLEDRIVKNAFRKNENPCICPPNFPVCTCGRKSKGKVITRKPILPTEEEMEINSRSKSA 303

Query: 310 KLRAGMR 316
           KLR   +
Sbjct: 304 KLRVFEK 310


>gi|260589610|ref|ZP_05855523.1| S-adenosyl-methyltransferase MraW [Blautia hansenii DSM 20583]
 gi|331083033|ref|ZP_08332152.1| ribosomal RNA small subunit methyltransferase H 2 [Lachnospiraceae
           bacterium 6_1_63FAA]
 gi|260539850|gb|EEX20419.1| S-adenosyl-methyltransferase MraW [Blautia hansenii DSM 20583]
 gi|330399770|gb|EGG79431.1| ribosomal RNA small subunit methyltransferase H 2 [Lachnospiraceae
           bacterium 6_1_63FAA]
          Length = 313

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 100/310 (32%), Positives = 173/310 (55%), Gaps = 9/310 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            H  VLLE+ +  L   P  + +D T G GG+S + C+      ++I +D+D  A++   
Sbjct: 4   KHQSVLLEETVGNLRVKPDGIYVDGTLGGGGHSYAICQQLSAKGSLIGIDQDEAAINAAG 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             ++++KEQ ++ ++ +  ++  +   G   VDG+V DLGVSS Q+D  +RGF++++  P
Sbjct: 64  NRLQEFKEQVTIIRSNYCNMKRELQKIGITSVDGIVLDLGVSSYQLDNSERGFTYREDVP 123

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM   +  +A ++VN+ +  +L RI+   GE+K A  IA  I   RQ    +TT +L
Sbjct: 124 LDMRMDQRNPRTAKNIVNEYSENELYRIIRDYGEDKFAKNIAKHICMARQEKEIETTGEL 183

Query: 192 SSLIQKTVYFSKNN-RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I++ +         HPA ++FQA+RI +N E++ L   L    + L   G + +++F
Sbjct: 184 IEIIKRAIPMKMRAVGGHPAKKTFQAIRIELNQELDVLRNSLDDMIELLNDQGRICIITF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  F              +    + +  + IT+K ++P++E++  N+RS+SA
Sbjct: 244 HSLEDRIVKTIFKRNENPCTCPPGFPVCVCGNQSKGKVITRKPILPSEEELEMNKRSKSA 303

Query: 310 KLRAGMRTVE 319
           KLR   R  +
Sbjct: 304 KLRVFERVKQ 313


>gi|229541208|ref|ZP_04430268.1| S-adenosyl-methyltransferase MraW [Bacillus coagulans 36D1]
 gi|229325628|gb|EEN91303.1| S-adenosyl-methyltransferase MraW [Bacillus coagulans 36D1]
          Length = 309

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 113/309 (36%), Positives = 171/309 (55%), Gaps = 10/309 (3%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74
           +  H  VLL++ +  L+  P  + +D T G GG+S    +   G ++ A D+D  A+   
Sbjct: 1   MFQHKTVLLKETVDGLHIKPDGIYVDCTLGGGGHSAYLLQQLTGGHLYAFDQDETAIQHA 60

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +E     + + +  ++ F  L+  +  +GV   DG+++DLGVSS Q+D  +RGFS+Q   
Sbjct: 61  KEKFAHDQNRITFIKSNFRYLKSELNARGVQAVDGILYDLGVSSPQLDTPERGFSYQHDA 120

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM   + ++A +VVN+   + L RI    GEEK + +IA  I   R   P +TT +
Sbjct: 121 PLDMRMDLDTPLTAYEVVNEWPYEKLVRIFFRYGEEKFSKQIARKIEASRAKKPIETTGE 180

Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ LI++ +   ++    HPA R FQA+RI VN+E+      L  A   LK GG + V++
Sbjct: 181 LADLIKEAIPAPARRKGGHPAKRVFQAIRIAVNDELSAFETSLTDAISLLKPGGRVSVIT 240

Query: 250 FHSLEDRLVKKFFASRS--GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           FHSLEDR+ K      S  G +     +IP    P V + IT+K +VP  E+V  N RSR
Sbjct: 241 FHSLEDRICKNILKEYSSAGDLPHGLPVIPKEYEP-VLKLITRKPIVPNDEEVGENNRSR 299

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 300 SAKLRIAEK 308


>gi|69244718|ref|ZP_00602982.1| methyltransferase [Enterococcus faecium DO]
 gi|257879362|ref|ZP_05659015.1| methyltransferase [Enterococcus faecium 1,230,933]
 gi|257881772|ref|ZP_05661425.1| methyltransferase [Enterococcus faecium 1,231,502]
 gi|257890188|ref|ZP_05669841.1| methyltransferase [Enterococcus faecium 1,231,410]
 gi|257893516|ref|ZP_05673169.1| methyltransferase [Enterococcus faecium 1,231,408]
 gi|260558804|ref|ZP_05830993.1| methyltransferase [Enterococcus faecium C68]
 gi|293553181|ref|ZP_06673818.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium E1039]
 gi|293560478|ref|ZP_06676970.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium E1162]
 gi|293568304|ref|ZP_06679628.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium E1071]
 gi|294621599|ref|ZP_06700764.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium U0317]
 gi|314937875|ref|ZP_07845191.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium TX0133a04]
 gi|314941366|ref|ZP_07848259.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium TX0133C]
 gi|314950125|ref|ZP_07853411.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium TX0082]
 gi|314951334|ref|ZP_07854388.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium TX0133A]
 gi|314992835|ref|ZP_07858236.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium TX0133B]
 gi|314997995|ref|ZP_07862890.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium TX0133a01]
 gi|68196309|gb|EAN10738.1| methyltransferase [Enterococcus faecium DO]
 gi|257813590|gb|EEV42348.1| methyltransferase [Enterococcus faecium 1,230,933]
 gi|257817430|gb|EEV44758.1| methyltransferase [Enterococcus faecium 1,231,502]
 gi|257826548|gb|EEV53174.1| methyltransferase [Enterococcus faecium 1,231,410]
 gi|257829895|gb|EEV56502.1| methyltransferase [Enterococcus faecium 1,231,408]
 gi|260075263|gb|EEW63576.1| methyltransferase [Enterococcus faecium C68]
 gi|291589016|gb|EFF20840.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium E1071]
 gi|291598764|gb|EFF29816.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium U0317]
 gi|291602591|gb|EFF32806.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium E1039]
 gi|291605626|gb|EFF35068.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium E1162]
 gi|313588007|gb|EFR66852.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium TX0133a01]
 gi|313592639|gb|EFR71484.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium TX0133B]
 gi|313596551|gb|EFR75396.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium TX0133A]
 gi|313599789|gb|EFR78632.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium TX0133C]
 gi|313642733|gb|EFS07313.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium TX0133a04]
 gi|313643566|gb|EFS08146.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium TX0082]
          Length = 319

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 107/313 (34%), Positives = 172/313 (54%), Gaps = 10/313 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  V+L++ +  LN  P  V +D T G  G+S           ++ A D+D  A+ 
Sbjct: 3   ETFQHYTVMLKETVDGLNIKPDGVYVDCTLGGAGHSEYLLSQLSSKGHLYAFDQDQKAID 62

Query: 73  CGQETMRDYKEQ--FSLFQATFSQLQDYVPDK--GVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             +  +  Y EQ   +  +A F +L++ + +    VDG+++DLGVSS Q+D  +RGFS+ 
Sbjct: 63  HAKLRLASYVEQGMVTFIKANFRELEERLSEHVDKVDGILYDLGVSSPQLDEAERGFSYH 122

Query: 129 KSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           +  PLDMRM  S  +SA  V+N+ +  +L +I    GEEK + +IA  I + R++ P QT
Sbjct: 123 QDAPLDMRMDQSAPLSAYHVINEYSYHELVKIFFRYGEEKFSKQIAREIERVRKTKPIQT 182

Query: 188 TQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T +L  +I++ +   ++    HPA R FQA+RI VN+E+      L  A + LK  G + 
Sbjct: 183 TGELVEIIKQVIPAPARRKGGHPAKRIFQAVRIAVNDELGAEEASLEQAIRLLKVNGRIS 242

Query: 247 VVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           V++FHSLEDR+VK  F   S  + +     +  +      + IT+K ++P++E++  N R
Sbjct: 243 VITFHSLEDRIVKSMFKEYSTVQDLPPGLPVIPDEFQPELKVITRKPILPSEEELTENNR 302

Query: 306 SRSAKLRAGMRTV 318
           SRSAKLR   +  
Sbjct: 303 SRSAKLRIAEKIR 315


>gi|154485082|ref|ZP_02027530.1| hypothetical protein EUBVEN_02805 [Eubacterium ventriosum ATCC
           27560]
 gi|149734035|gb|EDM50154.1| hypothetical protein EUBVEN_02805 [Eubacterium ventriosum ATCC
           27560]
          Length = 311

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 108/307 (35%), Positives = 174/307 (56%), Gaps = 9/307 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            HV VLL + I  LN  P  + +D T G GG+S   CK       +I +D+D  A+   +
Sbjct: 4   KHVSVLLNETIDGLNINPDGIYVDGTLGGGGHSYEICKRLSDKGRLIGIDQDGEALEAAR 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E +++++++ +L ++ + ++   + D   + VDG+V DLGVSS Q+D  +RGFS++   P
Sbjct: 64  ERLKEFEDKITLVRSNYCEIDTILKDLEIEKVDGIVLDLGVSSYQLDNLERGFSYKSDAP 123

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM      +A+DVVN  +  +L RI+   GE+K A  IA  IV  R+  P +TT +L
Sbjct: 124 LDMRMDQRQNKTAADVVNNYSENELFRIIRDYGEDKFAKNIAKHIVMARKEKPLETTAEL 183

Query: 192 SSLIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           S +I+ ++      +  HPA ++FQA+RI VN E+  L + L +    L  GG + V++F
Sbjct: 184 SEIIKASIPMKFQAKGGHPAKKTFQAIRIEVNQELTVLKESLDTMIDHLNPGGRICVITF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+ K  F              +      +  + IT+K ++P++E++  N+RS+S+
Sbjct: 244 HSLEDRITKIKFRENENPCTCPPDFPVCVCGKVSKGKVITRKPIIPSEEEMTENKRSKSS 303

Query: 310 KLRAGMR 316
           KLR   R
Sbjct: 304 KLRIFER 310


>gi|331269345|ref|YP_004395837.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum BKT015925]
 gi|329125895|gb|AEB75840.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum BKT015925]
          Length = 309

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 110/307 (35%), Positives = 170/307 (55%), Gaps = 9/307 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
           +HVPVLLE+ I  LN     + +D T G  G+S    K       +I +D+D  A+   +
Sbjct: 4   NHVPVLLEETIDSLNIKEDGIYVDCTLGGAGHSSHILKRLSKRGKLIGIDQDVNALKAAK 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E +++Y +        F  L   + +   + VDG++ DLGVSS Q+D  +RGFS+ +   
Sbjct: 64  ERLKNY-DNVIYVHNNFYNLASVLDELNIEKVDGILMDLGVSSYQLDTAERGFSYMQDAM 122

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+    ISA +VVN+ + ++L RI+   GEE+ A +IA AIVK+R+  P +TT DL
Sbjct: 123 LDMRMNTEESISAYNVVNEYSEEELFRIIKEYGEERFARKIAKAIVKQREIEPVKTTLDL 182

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             +I+  +        HPA ++FQA+RI VN+E+E L + +    K L   G + V++FH
Sbjct: 183 VKIIKNVIPMKFQQGGHPAKKTFQAIRIEVNHELEILNKTIEDGVKHLNLDGRISVITFH 242

Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK  F          +   +       V + IT+K + P++++   N RSRS+K
Sbjct: 243 SLEDRIVKTKFKKLENPCTCPKEFPVCICGMKPVVKVITRKPLEPSEDEKENNSRSRSSK 302

Query: 311 LRAGMRT 317
           LR   + 
Sbjct: 303 LRVAQKI 309


>gi|327441162|dbj|BAK17527.1| predicted S-adenosylmethionine-dependent methyltransferase
           [Solibacillus silvestris StLB046]
          Length = 316

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 106/316 (33%), Positives = 168/316 (53%), Gaps = 9/316 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSC 73
           + DH  VLL++ +  LN  P  + +D T G  G+S            +I  D+D  A+  
Sbjct: 1   MFDHTTVLLKETVDGLNINPDGIYVDCTLGGAGHSEYLVQQLSEKGRLICFDQDTTAIEN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +  + DY ++     + F  L++ +       +DG+++DLGVSS Q+D  +RGFS+   
Sbjct: 61  AKVRLADYLDRVIFVHSNFRYLKEELHKLNIHQIDGILYDLGVSSPQLDTPERGFSYHHD 120

Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM  +  +SA  VVN+ + ++L RI    GEEK + ++A  I + R+ AP +TT 
Sbjct: 121 APLDMRMDQTAELSAYHVVNEWSYENLVRIFFRYGEEKFSKQVARKIEQAREIAPVETTG 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L  LI+  +   ++    HPA R FQA+RI VN+E+      L  A   LK GG + V+
Sbjct: 181 QLVELIKDGIPAPARRKGGHPAKRIFQAIRIAVNDELGAAEDSLVDAIDLLKIGGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K  F   S    +     +       + + +++K ++P+ E++A N RSR
Sbjct: 241 TFHSLEDRLTKTLFKEASSLPDLPPGLPVIPEHMKPILKLVSRKPILPSDEELAANNRSR 300

Query: 308 SAKLRAGMRTVERSIE 323
           SAKLR   +  ++   
Sbjct: 301 SAKLRIAEKINDKGRG 316


>gi|329770446|ref|ZP_08261828.1| ribosomal RNA small subunit methyltransferase H [Gemella sanguinis
           M325]
 gi|328836569|gb|EGF86229.1| ribosomal RNA small subunit methyltransferase H [Gemella sanguinis
           M325]
          Length = 310

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 113/307 (36%), Positives = 170/307 (55%), Gaps = 8/307 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74
           +  H  VLLE+ I  LN     + +D T G  G+S    K      + A D+D  A+   
Sbjct: 1   MFKHYSVLLEEAIEGLNIKDDGIYVDCTLGGAGHSLEILKKLTTGKLYAFDQDNVALENA 60

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +  + +Y ++    ++ F  L++ + ++ V   DGV++DLGVSS Q+D  +RGFS+    
Sbjct: 61  KIKLSEYADKVVFIKSNFENLKEKLAEQNVYEVDGVLYDLGVSSPQLDTPERGFSYNYDT 120

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM     ISA +VVN+ +  DL RI    GEEK + +IA  I K+R+ AP +TT  
Sbjct: 121 RLDMRMDTDASISAYEVVNEYSYHDLVRIFYRYGEEKFSKQIARNIEKKRELAPIETTFQ 180

Query: 191 LSSLIQKTVYFSKNN-RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I++++  +K     HPA R FQA+RI VNNE+      L  A   +K GG + V++
Sbjct: 181 LVDIIKESIPAAKRRTGGHPAKRVFQAIRIAVNNELSVFENSLEQAIDIVKVGGRISVIT 240

Query: 250 FHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+ K+ F S +  K +     I  N   +  + IT+K + P+ +++  N RSRS
Sbjct: 241 FHSLEDRICKQIFNSYAKNKEIPKNLPILPNESLSKLKLITRKPICPSDKELEENNRSRS 300

Query: 309 AKLRAGM 315
           AKLR   
Sbjct: 301 AKLRVAE 307


>gi|332686267|ref|YP_004456041.1| rRNA small subunit methyltransferase H [Melissococcus plutonius
           ATCC 35311]
 gi|332370276|dbj|BAK21232.1| rRNA small subunit methyltransferase H [Melissococcus plutonius
           ATCC 35311]
          Length = 316

 Score =  395 bits (1015), Expect = e-108,   Method: Composition-based stats.
 Identities = 106/314 (33%), Positives = 172/314 (54%), Gaps = 11/314 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
              +H  VLL++ I  LN  P  + +D T G GG+S+          ++   D+D  A++
Sbjct: 3   ETFNHQTVLLKETINELNINPNGIYVDCTLGGGGHSQYLLSKLSEKGHLYVFDQDEMALT 62

Query: 73  CGQETMRDYKEQ--FSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSF 127
              + +  Y E+   +  +A F  L++ + +     VDG+ +DLGVSS Q+D  +RGFS+
Sbjct: 63  AASKRLAPYVEKQMVTFIKANFRLLKEKLFEKHVFQVDGIFYDLGVSSPQLDEAERGFSY 122

Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
               PLDMRM   S ++A ++VN  + ++L ++     EEK + +IA  I + R +   Q
Sbjct: 123 HHDAPLDMRMDQTSSLTAYEIVNHYSYENLVKVFFRYSEEKFSKQIAREIERVRLNQTIQ 182

Query: 187 TTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           TT +L  +I+K +   ++    HPA R FQA+RI VN+E+  +   L  A + L   G +
Sbjct: 183 TTGELVEIIKKVIPAPARRTGGHPAKRIFQAIRIAVNDELGAIEVSLEQAIELLNKNGRI 242

Query: 246 IVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
            V++FHSLEDR+VK  F S S  K +     +    +  + + ITKK ++P++E+   N 
Sbjct: 243 GVITFHSLEDRIVKNMFKSYSTPKDLPPGLPVVPEEYQPILKVITKKPIIPSEEEQKQNN 302

Query: 305 RSRSAKLRAGMRTV 318
           RSRSAKLR   + +
Sbjct: 303 RSRSAKLRIAEKII 316


>gi|310828121|ref|YP_003960478.1| hypothetical protein ELI_2533 [Eubacterium limosum KIST612]
 gi|308739855|gb|ADO37515.1| hypothetical protein ELI_2533 [Eubacterium limosum KIST612]
          Length = 311

 Score =  395 bits (1015), Expect = e-108,   Method: Composition-based stats.
 Identities = 114/306 (37%), Positives = 169/306 (55%), Gaps = 9/306 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H  VLL + +  L   P    +D T G GG+S   CK       +I +D+D FA+     
Sbjct: 5   HTTVLLHETVDGLMIRPDGTYVDGTLGGGGHSELICKRLSADGTLIGIDQDDFALDYAGR 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  Y  +  L +  F  L++ + + GV   DG+++DLGVSS Q D   RGFS+   GPL
Sbjct: 65  RLAPYACRKQLVKNNFVHLKEVLGEAGVSQIDGIIYDLGVSSFQFDDETRGFSYHHDGPL 124

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM   + +SA +VVN    + L ++L + GEE+ A RI +AI+K R++ P +TT +LS
Sbjct: 125 DMRMDSGAELSAYEVVNAYPPERLKKVLQVYGEERFAGRIVNAIIKERETKPIETTLELS 184

Query: 193 SLIQKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            LI+      +     HPA +SFQA+R+ VN+E++ L     +  +ALK GG + +++FH
Sbjct: 185 ELIKAAYPAKERFKEKHPARKSFQAIRLEVNHELDILEDAFSAGIEALKPGGRMCIITFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK FF  +                     + IT+K V+P  E++  NRRSRSAK
Sbjct: 245 SLEDRIVKHFFKDKQNPCTCPPEFPACVCGKKPEVRIITRKPVLPAPEEIEANRRSRSAK 304

Query: 311 LRAGMR 316
           LR   +
Sbjct: 305 LRIAEK 310


>gi|302386836|ref|YP_003822658.1| S-adenosyl-methyltransferase MraW [Clostridium saccharolyticum WM1]
 gi|302197464|gb|ADL05035.1| S-adenosyl-methyltransferase MraW [Clostridium saccharolyticum WM1]
          Length = 312

 Score =  395 bits (1015), Expect = e-108,   Method: Composition-based stats.
 Identities = 108/311 (34%), Positives = 180/311 (57%), Gaps = 10/311 (3%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSC 73
           + +H  VLL + I  LN  P  + +D T G GG++   CK       +I +D+D  A+  
Sbjct: 2   MFEHKSVLLYETIDSLNVKPDGIYVDGTLGGGGHALEVCKRLGTYGRLIGIDQDGDAIKA 61

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
             E ++DY+++ ++ ++ +  +Q  + D G   VDG+  DLGVSS Q+D  +RGF++++ 
Sbjct: 62  AAERLKDYEDKVTVVRSNYENIQTVLKDLGIEKVDGIYLDLGVSSYQLDKPERGFTYRED 121

Query: 131 -GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM   +  +A+D++N  +  DL RI+   GE+K A  IA  IV+ RQ  P +TT
Sbjct: 122 DAPLDMRMDQRNEQTAADIINSYSEFDLYRIIRDYGEDKFAKNIAKHIVRARQGKPIETT 181

Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L+ +I++ +    +    HP+ R+FQA+RI +N E+E L + L +    L  GG L +
Sbjct: 182 GELTEIIKEAIPARVRAVGGHPSKRTFQAIRIELNKELEVLNKSLDTMIDLLNPGGRLSI 241

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           ++FHSLEDR+VK  F +     +      +      +  + IT+K +VP++E++  N+RS
Sbjct: 242 ITFHSLEDRMVKTRFRTNENPCICPSDFPVCVCGRKSKGKVITRKPIVPSEEEIEENKRS 301

Query: 307 RSAKLRAGMRT 317
           +S+KLR   R 
Sbjct: 302 KSSKLRVFERI 312


>gi|311029920|ref|ZP_07708010.1| S-adenosyl-methyltransferase MraW [Bacillus sp. m3-13]
          Length = 312

 Score =  394 bits (1014), Expect = e-108,   Method: Composition-based stats.
 Identities = 112/310 (36%), Positives = 175/310 (56%), Gaps = 11/310 (3%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  HV VLL + +  LN       +D T G  G+S    K       +IA D+D  A+  
Sbjct: 1   MFHHVTVLLNEAVEGLNIKEDGTYVDCTLGGAGHSSEIVKQLSDKGRLIAFDQDDHALEH 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +  + +Y ++    ++ F  L++ + ++G   VDGV+FDLGVSS Q+D  +RGFS+   
Sbjct: 61  AKNVLHNYLDRVIFIKSNFKHLKEKLYEQGITKVDGVLFDLGVSSPQLDTPERGFSYHHE 120

Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM  +  +SA DVVN+ + + L RI    GEEK + +IA  I + R+S P +TT 
Sbjct: 121 APLDMRMDMNSPLSAYDVVNEWSYEKLVRIFFQYGEEKFSKQIARKIEEYRKSKPIETTL 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I+  +   ++    HPA R FQA+RI VN+E+      +  A   LK GG + V+
Sbjct: 181 ELVEIIKDGIPAPARRTGGHPAKRVFQAIRIAVNDELGVFEDAIHQAIDVLKVGGRVSVI 240

Query: 249 SFHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           +FHSLEDR+ K  F  +S   ++     +IP    P + + IT+K ++P++E++  N R+
Sbjct: 241 TFHSLEDRMCKVAFKEKSQLPQLPPGLPIIPEEFQP-ILKLITRKPILPSEEELETNNRA 299

Query: 307 RSAKLRAGMR 316
           RSAKLR   +
Sbjct: 300 RSAKLRIAEK 309


>gi|253681660|ref|ZP_04862457.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum D str.
           1873]
 gi|253561372|gb|EES90824.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum D str.
           1873]
          Length = 309

 Score =  394 bits (1014), Expect = e-108,   Method: Composition-based stats.
 Identities = 110/307 (35%), Positives = 172/307 (56%), Gaps = 9/307 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
           +HVPVLLE+ I  LN     + +D T G  G+S    K       +I +D+D  A+   +
Sbjct: 4   NHVPVLLEETIDSLNIKEDGIYVDCTLGGAGHSSYILKRLSKKGKLIGIDQDINALKAAK 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E +++Y +        F  L   + +   + VDG++ DLGVSS Q+D  +RGFS+ +   
Sbjct: 64  EKLKNY-DNVIYVHNNFYNLASVLDELNIEKVDGILMDLGVSSYQLDTAERGFSYMQDAV 122

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+    +SA ++VN+ + ++L RI+   GEE+ A +IA AIVK+R+  P +TT +L
Sbjct: 123 LDMRMNTEESVSAYNIVNEYSEEELFRIIKEYGEERFARKIAKAIVKQREIEPVKTTLEL 182

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             +I+K +        HPA ++FQA+RI VN+E+E L + +    K L + G + +++FH
Sbjct: 183 VKIIKKVIPMKFQQGGHPAKKTFQAIRIEVNHELEILNKTIEDGVKHLNSHGRISIITFH 242

Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK  F          +   I       V + IT+K + P+QE+   N RS+S+K
Sbjct: 243 SLEDRIVKNKFKELENPCTCPKEFPICICGMKPVVKVITRKPLEPSQEEKENNSRSKSSK 302

Query: 311 LRAGMRT 317
           LR   R 
Sbjct: 303 LRVAQRI 309


>gi|291525276|emb|CBK90863.1| S-adenosyl-methyltransferase MraW [Eubacterium rectale DSM 17629]
          Length = 314

 Score =  394 bits (1014), Expect = e-108,   Method: Composition-based stats.
 Identities = 98/309 (31%), Positives = 166/309 (53%), Gaps = 10/309 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            H  VL ++ I  LN  P  + +D T G  G+S    K       +I +D+D  A+    
Sbjct: 4   KHYSVLRDETIENLNIRPDGIYVDGTLGGAGHSYEIAKRLSDKGRLIGIDQDADAIKAAG 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK-SG 131
           E + ++ ++ ++ ++ +S +++ +   G   VDG++ DLGVSS Q+D   RGF+++    
Sbjct: 64  ERLAEFGDRVTIVRSNYSDMKNVLHSLGIEKVDGIMLDLGVSSFQLDTPKRGFTYRSEDA 123

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM   + ++A D+VN  +  DL RI+   GE+K A  IA  IV  RQ     TT +
Sbjct: 124 PLDMRMDDRNALTARDIVNTYSENDLYRIIRDYGEDKFAKNIAKHIVAARQKQEITTTGE 183

Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I+  +    +    HP+ R++QA+RI +N+E++ L   L      L  GG + +++
Sbjct: 184 LNEIIKAAIPQKVRATGGHPSKRTYQAIRIELNHELDVLRDSLDDMIDLLNPGGRICIIT 243

Query: 250 FHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK  F              +    + +    IT+K ++P+++++  N RS+S
Sbjct: 244 FHSLEDRIVKSNFKKNENPCTCPPSFPVCVCGNKSKGTVITRKPILPSEKELEENSRSKS 303

Query: 309 AKLRAGMRT 317
           AKLR   + 
Sbjct: 304 AKLRVFEKN 312


>gi|169824308|ref|YP_001691919.1| S-adenosyl-methyltransferase [Finegoldia magna ATCC 29328]
 gi|263447055|sp|B0S0Y9|RSMH_FINM2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|167831113|dbj|BAG08029.1| S-adenosyl-methyltransferase [Finegoldia magna ATCC 29328]
          Length = 312

 Score =  394 bits (1014), Expect = e-108,   Method: Composition-based stats.
 Identities = 102/309 (33%), Positives = 165/309 (53%), Gaps = 9/309 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76
            HVP+LL + I  LN   GK+ +D T G  G+SR   K      +I  D+D  A+   ++
Sbjct: 4   KHVPILLNECIENLNIRDGKIYVDCTVGGAGHSREIAKRIGNGKLICFDQDEDALKVAKQ 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + ++ ++    +  F  +++ + + G   VDG++ D+GVSS QID   RGFS+     L
Sbjct: 64  RLEEFGDKIIFIKDNFKNIKNDLHNLGIEKVDGILMDIGVSSYQIDEDSRGFSYMHDADL 123

Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  S   SA D+VN  + +DL  ++    +EK A RIA  I   R++ P  TT +L 
Sbjct: 124 DMRMDQSNPISAKDIVNTYSKEDLENVIFKYSDEKWAKRIAEFICNARETKPINTTFELV 183

Query: 193 SLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
            +I+K +        + H A ++FQA+RI VN E++ L Q +  +   L   G + +++F
Sbjct: 184 EVIEKAIPKKVRMNQKGHSAKKTFQAIRIEVNKELDVLEQAVGDSIDLLNPEGRICIITF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLED++ K  F  R    +      +    H    + IT+K + P++E++  N R+RSA
Sbjct: 244 HSLEDKICKDIFRQRQKGCICPPEIPVCVCNHKPEIKIITRKPIEPSKEELEQNSRARSA 303

Query: 310 KLRAGMRTV 318
           KLR   + +
Sbjct: 304 KLRVAEKII 312


>gi|20138864|sp|O07665|RSMH_ENTHR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|2624083|emb|CAA74239.1| mraW [Enterococcus hirae]
          Length = 319

 Score =  394 bits (1013), Expect = e-108,   Method: Composition-based stats.
 Identities = 108/314 (34%), Positives = 171/314 (54%), Gaps = 12/314 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
               H  V+L++ +  LN  P  + +D T G  G+S           ++ A D+D  A+ 
Sbjct: 3   ETFQHYTVMLKETVDGLNIKPDGIYVDCTLGGAGHSEYLLSQLNTNGHLYAFDQDQKAID 62

Query: 73  CGQETMRDYKEQ--FSLFQATFSQLQDYVPDK--GVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             +  +  Y E+   +  +A F +L+  + +    VDG+++DLGVSS Q+D  +RGFS+ 
Sbjct: 63  HAKVRLAPYIEKGMVTFIKANFRELEAKIKEHVPQVDGILYDLGVSSPQLDEAERGFSYH 122

Query: 129 KSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           +  PLDMRM  S  +SA DVVN+ +  +L +I    GEEK + +IA  I + R+  P QT
Sbjct: 123 QDAPLDMRMDQSAPLSAYDVVNEYSYNELVKIFFRYGEEKFSKQIAREIERVRKIHPIQT 182

Query: 188 TQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T +L  +I+  +   ++    HPA R FQA+RI VN+E+      L  A + LK  G + 
Sbjct: 183 TGELVEIIKDVIPAPARRKGGHPAKRIFQAIRIAVNDELGAEEASLEQAIRLLKINGRIS 242

Query: 247 VVSFHSLEDRLVKKFFASRS--GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           V++FHSLEDR+VK  F   S    +     ++P    P   + I +K ++P++E+++ N 
Sbjct: 243 VITFHSLEDRIVKSMFKEYSTVQDLPPGLPVVPEEFQP-ELKLINRKPILPSEEELSENN 301

Query: 305 RSRSAKLRAGMRTV 318
           RSRSAKLR   +  
Sbjct: 302 RSRSAKLRIAEKIR 315


>gi|182626151|ref|ZP_02953911.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens D str.
           JGS1721]
 gi|177908588|gb|EDT71113.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens D str.
           JGS1721]
          Length = 310

 Score =  394 bits (1013), Expect = e-108,   Method: Composition-based stats.
 Identities = 110/307 (35%), Positives = 169/307 (55%), Gaps = 10/307 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            HV VLL++ I  LN     + +D T G  G+S    K       +I  D+D  A+    
Sbjct: 4   KHVSVLLDECINALNIKEDGIYVDCTLGGAGHSSEIVKRLSSDGRLIGFDQDKDALKAAG 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E ++DYK   +   + F  + D + D    GVDG++ DLGVSS Q+D G+RGFS+ +  P
Sbjct: 64  ERLKDYK-NVTYVHSNFYAIYDVLTDLGIDGVDGILMDLGVSSYQLDNGERGFSYMQDAP 122

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+  +  SA ++VN  + ++L RI+   GEEK A RIA  IVK R+    ++T +L
Sbjct: 123 LDMRMNRENEFSAYEIVNTYSEEELYRIIKEYGEEKFAKRIASFIVKNREEKNIESTLEL 182

Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+  +    +    HPA R+FQA+RI VN E+E +++ +    K L  GG + +++F
Sbjct: 183 VEIIKAAIPAKARREGPHPAKRTFQAIRIEVNKELEIISKTILDGVKKLNKGGRMAIITF 242

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  F   +          +         + I++K +  ++E++ FN RSRSA
Sbjct: 243 HSLEDRIVKNTFKELANPCTCPSEFPVCVCNRKPEVKLISRKPIEASKEELEFNPRSRSA 302

Query: 310 KLRAGMR 316
           KLR   +
Sbjct: 303 KLRIIEK 309


>gi|304317210|ref|YP_003852355.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778712|gb|ADL69271.1| S-adenosyl-methyltransferase MraW [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 310

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 107/305 (35%), Positives = 160/305 (52%), Gaps = 8/305 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76
            H  VLL + I  L   P  V +D T G GG+S    +      +IA+DRD  A+     
Sbjct: 4   KHESVLLNETIEYLKVKPDGVYVDGTLGGGGHSYEILRRLPRGRLIAIDRDMDALYAASV 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++D+    +     +  +++ + +  +   DG + DLGVSS Q+D   RGFS+    PL
Sbjct: 64  RLKDF-NNVTYVHDNYKNIKNILKNIDIERIDGAILDLGVSSYQLDEVKRGFSYMHDAPL 122

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM   S ++A  VVN  +  D+ RIL   GEEK A RIA  IV+ R+    +TT  L 
Sbjct: 123 DMRMDKGSALTAEHVVNNYSEDDIARILFDYGEEKWAKRIAKFIVEERKKRSIKTTFQLV 182

Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+K V    +    HPA R+FQA+RI VN+E++ L   +      +   G + +++FH
Sbjct: 183 DIIKKAVPASKRRTGPHPAKRTFQAIRIEVNDELKGLDSAIDDFIDVMNPNGRIAIITFH 242

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+VK  +          +++  +     V + ITKK V P +E++  N RSRSAKL
Sbjct: 243 SLEDRIVKNMYKKLENPCTCPKNLPCTCGKKPVIKIITKKPVTPNKEELKTNPRSRSAKL 302

Query: 312 RAGMR 316
           R   +
Sbjct: 303 RVAEK 307


>gi|300768848|ref|ZP_07078742.1| S-adenosyl-methyltransferase MraW [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|300493581|gb|EFK28755.1| S-adenosyl-methyltransferase MraW [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
          Length = 319

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 118/313 (37%), Positives = 170/313 (54%), Gaps = 13/313 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVS 72
              +H  VLL + IA LN  P  + +D T G GG+SR   +   +G ++ + D+D  A+ 
Sbjct: 2   ATFEHTTVLLHEAIAALNVRPDGIYVDCTLGGGGHSREILQQLGLGGHLYSFDQDQTAID 61

Query: 73  CGQETMRDYKEQ--FSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSF 127
             Q  +  Y E+   +  ++ F+ L+  +  +G   VDGVV+DLGVSS Q D   RGFS+
Sbjct: 62  YNQSNLATYLERGQVTFIKSNFANLKTELNARGLDHVDGVVYDLGVSSPQFDDAARGFSY 121

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           Q   PLDMRM  S  ++A  VVN     DL RI    GEEK + ++A  I + R   P  
Sbjct: 122 QHDAPLDMRMDQSQKLTAQTVVNTWPYADLVRIFYRYGEEKFSKQVARLIERERAVQPIV 181

Query: 187 TTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           TT  L  +I+  +    +    HPA R FQA+RI VNNE+  L   L  A   +   G +
Sbjct: 182 TTGQLVEIIKNAIPARARRTGGHPAKRVFQAIRIAVNNELGVLETSLEQAIDLINVHGRV 241

Query: 246 IVVSFHSLEDRLVKKFFASRS--GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            V++F SLEDRLVK  F   S   ++     +IP+   P  ++ +++K VVP+  ++  N
Sbjct: 242 SVITFQSLEDRLVKTIFKEHSDLPELPPGLPVIPAEMQP-DYRLVSRKPVVPSDAEIEAN 300

Query: 304 RRSRSAKLRAGMR 316
           RR+RSAKLRA  R
Sbjct: 301 RRARSAKLRAIER 313


>gi|313123436|ref|YP_004033695.1| s-adenosyl-l-methionine-dependent methyltransferase mraw
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312279999|gb|ADQ60718.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 314

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 106/310 (34%), Positives = 167/310 (53%), Gaps = 12/310 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76
            H  VLL + I  L P  G   +DATFG GG++R         N+I  D+D +A+   Q 
Sbjct: 4   KHTSVLLHETIDNLAPQSGGTYVDATFGGGGHARYLLSKLDKGNLIGFDQDQYAIDTAQS 63

Query: 77  TMRDY-----KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
               +     + +  L    FS L++ +      G+DG+ +DLGVSS Q+D  +RGFS++
Sbjct: 64  NFAAFLKEDSQPRLQLVHNNFSHLKEELAKLGISGIDGIYYDLGVSSPQLDQAERGFSYR 123

Query: 129 KSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
               LDMRM  S    A  +VNQ + K L  +L   G+EK + +IA  IV+RR+  P +T
Sbjct: 124 FDARLDMRMDQSQDFDAYQLVNQYDQKQLADVLYRYGDEKFSRQIARKIVERRRVKPIET 183

Query: 188 TQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T +L  +I++ +  + + +  HPA +SFQA+R+ VN+E++ L   L  A   L  GG + 
Sbjct: 184 TFELVEIIKEAIPAAARRSGGHPAKKSFQAIRVEVNHELDVLRASLEEAISLLNPGGRIS 243

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V++F SLED++VK+ F   S   +     +         + + +K +  ++E++A N RS
Sbjct: 244 VITFQSLEDKIVKQTFKKYSEVEIPRGMPVVPEGIKPTLRLVNRKPITASEEELAENNRS 303

Query: 307 RSAKLRAGMR 316
            SAKLR   +
Sbjct: 304 HSAKLRVAEK 313


>gi|331090606|ref|ZP_08339457.1| ribosomal RNA small subunit methyltransferase H 2 [Lachnospiraceae
           bacterium 2_1_46FAA]
 gi|330401046|gb|EGG80641.1| ribosomal RNA small subunit methyltransferase H 2 [Lachnospiraceae
           bacterium 2_1_46FAA]
          Length = 311

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 106/309 (34%), Positives = 169/309 (54%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSC 73
             +H  VLLE+ +  LN  P  + +D T G GG++   CK  S+    I +D+D  A+  
Sbjct: 2   TFEHKSVLLEETVNGLNIKPDGIYVDGTLGGGGHAFEVCKQLSDKGSFIGIDQDEAAIEA 61

Query: 74  GQETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
               +RD+ E+ ++ ++ +  ++     +    VDG+V DLGVSS Q+D  +RGFS++  
Sbjct: 62  AGIRLRDFGERVTIVRSNYCDMKLQLQKLGIDKVDGIVLDLGVSSYQLDTAERGFSYRVD 121

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM     ++A D+VN  +  +L RI+   GE+K A  IA  IV  R+    +TT 
Sbjct: 122 VPLDMRMDRRQEMTAKDIVNTYSEMELYRIIRDYGEDKFAKNIAKHIVLEREKGSIETTG 181

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L  +I++ +    + N  HPA R+FQA+RI +N E++ L   L      L   G + ++
Sbjct: 182 QLIEIIKRAIPMKFQKNGGHPAKRTFQAIRIELNRELDVLRDSLDEMIDMLNENGRICII 241

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+VK  F           H  +    + +  + IT+K ++P+ E++ +N RS+
Sbjct: 242 TFHSLEDRIVKSIFRRNENPCTCPSHFPVCVCGNESKGKVITRKPILPSAEELEYNSRSK 301

Query: 308 SAKLRAGMR 316
           SAKLR   R
Sbjct: 302 SAKLRIFER 310


>gi|146295951|ref|YP_001179722.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|263446954|sp|A4XHZ6|RSMH_CALS8 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|145409527|gb|ABP66531.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 307

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 121/309 (39%), Positives = 187/309 (60%), Gaps = 10/309 (3%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSC 73
           + +H+PVLLE+  + L   P  + +DATFG GG+S+   +  S+   ++A+D+D  A+  
Sbjct: 1   MYEHIPVLLEESTSYLVTKPDGIYVDATFGLGGHSKKILEKLSSNGFLVAIDKDEEAIEL 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           G+E  +       +  + FS+L + +       +DG++FDLGVSS+Q+D  +RGFS+   
Sbjct: 61  GKEKFKKC-NNIKIVHSPFSRLDEVLNFLKIDKIDGILFDLGVSSLQLDKPERGFSYNSD 119

Query: 131 GPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM   S ++A DVVN+ + K+L RI+   GEE+ A +IA  IVKRR+  P  TT+
Sbjct: 120 SFLDMRMDKTSKLTAYDVVNKYSEKELERIIREYGEERYAKKIAKEIVKRREQKPITTTK 179

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           +L+ LI   V   K+   +PA R+FQA+RI VN E+EE+   L  + + LK+GG + V+S
Sbjct: 180 ELNDLINSVVPRPKDG-SNPAKRTFQAIRIEVNGELEEIKVALEKSIRFLKSGGRICVIS 238

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK+FF   S + +  +   +           +TKK + PT+E++  N+RS S
Sbjct: 239 FHSLEDRIVKEFFKYHSLECICPKDIPVCVCGKKKELNILTKKPITPTKEEIERNKRSHS 298

Query: 309 AKLRAGMRT 317
           AKLR   + 
Sbjct: 299 AKLRVAEKI 307


>gi|315026965|gb|EFT38897.1| S-adenosyl-methyltransferase MraW [Enterococcus faecalis TX2137]
          Length = 322

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 102/312 (32%), Positives = 168/312 (53%), Gaps = 11/312 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  V +D T G  G+S           ++ A D+D  A++  + 
Sbjct: 11  HYTVLLKETVDGLQVKPDGVYVDCTLGGAGHSEYLLTQLNEHGHLYAFDQDQKALAHAKT 70

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            ++ Y  K Q +  ++ F  +++ + + GV   DG+++DLGVSS Q+D  +RGFS+ +  
Sbjct: 71  RLQKYVDKGQVTFIKSNFRNIKEELAEHGVFHVDGILYDLGVSSPQLDEAERGFSYHQDA 130

Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM     ++A +V N  +  +L +I    GEEK + +IA  I + R+  P +TT +
Sbjct: 131 PLDMRMDQDAPLTAREVGNTYSYSELVKIFFRYGEEKFSKQIAREIERVREKQPIETTGE 190

Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I+  +   ++    HPA R FQA+RI VN+E+  + + L  A   L   G + V++
Sbjct: 191 LVEIIKTAIPAPARRKGGHPAKRIFQAIRIAVNDELGAVEESLEQAIDLLAKNGRISVIT 250

Query: 250 FHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK  F   S  + +     +         + IT+K ++P+  +++ N RSRS
Sbjct: 251 FHSLEDRIVKTMFKEYSTVQDLPPGIPVVPEEFQPELKVITRKPILPSDSELSENNRSRS 310

Query: 309 AKLRAGMRTVER 320
           AKLR   +   R
Sbjct: 311 AKLRIAEKIKSR 322


>gi|295706376|ref|YP_003599451.1| S-adenosyl-methyltransferase MraW [Bacillus megaterium DSM 319]
 gi|294804035|gb|ADF41101.1| S-adenosyl-methyltransferase MraW [Bacillus megaterium DSM 319]
          Length = 311

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 114/312 (36%), Positives = 178/312 (57%), Gaps = 11/312 (3%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSC 73
           + +H  VLL++    LN  P  V +D T G  G+S            +IA D+D  A++ 
Sbjct: 1   MFNHTTVLLKEAAEGLNIKPDGVYVDCTLGGAGHSEYIVKQLSEKGKLIAFDQDDVALAN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E +  Y ++  L ++ F  L++ + + G   VDGV+FDLGVSS Q+D  +RGFSF   
Sbjct: 61  AKEKLAPYLDRVILIKSNFRYLKEQLMEHGIEEVDGVLFDLGVSSPQLDTPERGFSFHHD 120

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM  + + SA +VVN+   + L +I    GEEK + +IA  I   R+S P +TT 
Sbjct: 121 APLDMRMDQNSMFSAYNVVNEWPYEKLVKIFFQYGEEKFSKQIARKIEAYRESKPIETTL 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  LI+  +   ++    HPA R FQA+RI VN+E++     +  A   +K GG + V+
Sbjct: 181 ELVDLIKDGIPAPARRTGGHPAKRIFQAIRIAVNDELQVFEDAIEQAMDVIKKGGRVSVI 240

Query: 249 SFHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           +FHSLEDR+ K  F + S   ++     +IP    P + + IT+K ++P++E++  N+R+
Sbjct: 241 TFHSLEDRICKVAFKNASTVPQLPHGLPIIPEEFKPKM-KVITRKPILPSEEEIEENKRA 299

Query: 307 RSAKLRAGMRTV 318
           RSAKLR   + V
Sbjct: 300 RSAKLRIVEKLV 311


>gi|153814616|ref|ZP_01967284.1| hypothetical protein RUMTOR_00830 [Ruminococcus torques ATCC 27756]
 gi|145848110|gb|EDK25028.1| hypothetical protein RUMTOR_00830 [Ruminococcus torques ATCC 27756]
          Length = 311

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 103/307 (33%), Positives = 170/307 (55%), Gaps = 9/307 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
           +HV VLL + +  LN     V +DAT G GG++   C+        I +D+D  A+    
Sbjct: 4   EHVSVLLNETVDGLNVKLDGVYVDATLGGGGHAYEVCRRLGSKGRFIGIDQDADAIKAAG 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E ++ + E+ ++ ++ +  ++  + + GVD   G+V DLGVSS Q+D  +RGFS++   P
Sbjct: 64  ERLKGFGEKVTIIRSNYRDMKPQLQNIGVDKVDGIVIDLGVSSYQLDTAERGFSYRVDAP 123

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM     ++A D+VN+ +  +L R++   GE+K A  IA  IV  R+  P +TT  L
Sbjct: 124 LDMRMDQRQKMTARDIVNEYSESELYRVIRDYGEDKFAKNIAKHIVAERRKNPIETTGQL 183

Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           + +I   +    +    HP+ R+FQA+RI +N+E++ L + L    + L  GG + +++F
Sbjct: 184 NEIISHAIPMKFRKTSGHPSKRTFQAIRIELNHELDVLRESLDDMIEMLNPGGRICIITF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  F           H  +      +  + IT+K ++P++ +   N RS+SA
Sbjct: 244 HSLEDRIVKSAFRKNENPCTCPSHFPVCVCGKISKGKVITRKPILPSEAETESNSRSKSA 303

Query: 310 KLRAGMR 316
           KLR   R
Sbjct: 304 KLRIFER 310


>gi|296133667|ref|YP_003640914.1| S-adenosyl-methyltransferase MraW [Thermincola sp. JR]
 gi|296032245|gb|ADG83013.1| S-adenosyl-methyltransferase MraW [Thermincola potens JR]
          Length = 319

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 111/316 (35%), Positives = 178/316 (56%), Gaps = 9/316 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
            HVPV+L++ I+ LN  P  + +D T G  G+S    K       ++ +D+D  A++ G+
Sbjct: 4   HHVPVMLDESISHLNIKPDGIYVDCTLGGAGHSAEILKKIQPNGFLVGIDQDINAIAAGE 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + +++    + L  + F++++D + + G   VDGV+FDLGVSS Q+D   RGFS++   P
Sbjct: 64  KRLKNIGSNYRLVHSNFNRIRDILEELGIYRVDGVLFDLGVSSYQLDQIQRGFSYKVDAP 123

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+    ++A  +VN     +L +I+   GEE+ A RIA  IV+ R      TT  L
Sbjct: 124 LDMRMNPLEPVTARILVNGLTEDELAKIISEYGEERWARRIAKFIVEARAREEISTTGQL 183

Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+  V   ++    HPA R+FQALRI VN+E+ +    LR A + L  GG + V+SF
Sbjct: 184 VEIIKNAVPAGARKEGPHPAKRTFQALRIAVNDELNKFKSALRDAIEVLAPGGRICVISF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+ K+ F   + + +      + +     + + IT K + P+  ++  N R+RSA
Sbjct: 244 HSLEDRITKEMFRDLAKECVCPPEFPVCTCGTVPMLKIITNKPIEPSAAEIERNPRARSA 303

Query: 310 KLRAGMRTVERSIEDD 325
           KLR   R V ++ E +
Sbjct: 304 KLRVAERLVLKNGEAE 319


>gi|322384129|ref|ZP_08057847.1| S-adenosyl-methyltransferase MraW-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321151209|gb|EFX44518.1| S-adenosyl-methyltransferase MraW-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 317

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 104/315 (33%), Positives = 178/315 (56%), Gaps = 15/315 (4%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSC 73
           +  H+ VL E+ +  L+  P  + +D T G  G+S            ++ALD+D  A++ 
Sbjct: 1   MFHHITVLKEEAVEGLDIKPDGLYVDCTLGGAGHSVRIASQLSKEGLLLALDQDASALAN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVP---------DKGVDGVVFDLGVSSMQIDCGDRG 124
            Q  + +Y+++  + +  F +L+  +             VDG++FDLGVSS Q+D  +RG
Sbjct: 61  AQNVLAEYEDRVRIVKTNFRELKHVLQLEPRTVKNGTPQVDGILFDLGVSSPQLDEAERG 120

Query: 125 FSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           FS+     LDMRM  S  ++A  +VN+   +++ RIL + GEEK + +IA +IVK R++ 
Sbjct: 121 FSYNHDAELDMRMDRSSPLTAKTIVNEWAPEEIARILFVYGEEKFSRKIASSIVKARENK 180

Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
             +TT +L  +I++ +  + + +  HPA RSFQALRI VN+E+      L  A + L  G
Sbjct: 181 TIETTGELVEIIKQAIPAAARRSGPHPAKRSFQALRIAVNDELGAFENALEQAIECLAPG 240

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVA 301
           G + V++FHSLEDR+ K+ FA   GK        +    + ++ + + +K +  +++++A
Sbjct: 241 GRVAVITFHSLEDRICKQMFAKFVGKCTCPPDFPMCVCNNKSILKLVNRKPITASEKELA 300

Query: 302 FNRRSRSAKLRAGMR 316
           +N R+RSAKLR   +
Sbjct: 301 YNPRARSAKLRIAEK 315


>gi|291529266|emb|CBK94852.1| S-adenosyl-methyltransferase MraW [Eubacterium rectale M104/1]
          Length = 314

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 98/309 (31%), Positives = 166/309 (53%), Gaps = 10/309 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            H  VL ++ I  LN  P  + +D T G  G+S    K       +I +D+D  A+    
Sbjct: 4   KHYSVLRDETIENLNIRPDGIYVDGTLGGAGHSYEIAKRLSDKGRLIGIDQDADAIKAAG 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK-SG 131
           E + ++ ++ ++ ++ +S +++ +   G   VDG++ DLGVSS Q+D   RGF+++    
Sbjct: 64  ERLAEFGDRVTIVRSNYSDMKNVLHSLGIEKVDGIMLDLGVSSFQLDTPKRGFTYRSEDA 123

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM   + ++A D+VN  +  DL RI+   GE+K A  IA  IV  RQ     TT +
Sbjct: 124 PLDMRMDDRNALTARDIVNTYSENDLYRIIRDYGEDKFAKNIAKHIVAARQKQEITTTGE 183

Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I+  +    +    HP+ R++QA+RI +N+E++ L   L      L  GG + +++
Sbjct: 184 LNEIIKAAIPKKVRATGGHPSKRTYQAIRIELNHELDVLRDNLDDMIDLLNPGGRICIIT 243

Query: 250 FHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK  F              +    + +    IT+K ++P+++++  N RS+S
Sbjct: 244 FHSLEDRIVKSNFKKNENPCTCPPSFPVCVCGNKSKGTVITRKPILPSEKELEENSRSKS 303

Query: 309 AKLRAGMRT 317
           AKLR   + 
Sbjct: 304 AKLRVFEKN 312


>gi|167461086|ref|ZP_02326175.1| hypothetical protein Plarl_00698 [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 317

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 104/315 (33%), Positives = 177/315 (56%), Gaps = 15/315 (4%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSC 73
           +  H+ VL E+ +  L+  P  + +D T G  G+S            ++ALD+D  A++ 
Sbjct: 1   MFHHITVLKEEAVEGLDIKPDGLYVDCTLGGAGHSVRIASQLSKEGLLLALDQDASALAN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVP---------DKGVDGVVFDLGVSSMQIDCGDRG 124
            Q  + +Y+++  + +  F +L+  +             VDG++FDLGVSS Q+D  +RG
Sbjct: 61  AQNVLAEYEDRVRIVKTNFRELKHVLQLEPRTVKNGTPQVDGILFDLGVSSPQLDEAERG 120

Query: 125 FSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           FS+     LDMRM  S  ++A  +VN+   +++ RIL + GEEK + +IA +IVK R++ 
Sbjct: 121 FSYNHDAELDMRMDRSSPLTAKTIVNEWAPEEIARILFVYGEEKFSRKIASSIVKARENK 180

Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
             +TT +L  +I++ +  + + +  HPA RSFQALRI VN+E+      L  A + L  G
Sbjct: 181 TIETTGELVEIIKQAIPAAARRSGPHPAKRSFQALRIAVNDELGAFENALEQAIECLAPG 240

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVA 301
           G + V++FHSLEDR+ K+ FA   GK        +    +  + + + +K +  +++++A
Sbjct: 241 GRVAVITFHSLEDRICKQMFAKFVGKCTCPPDFPMCVCNNKGILKLVNRKPITASEKELA 300

Query: 302 FNRRSRSAKLRAGMR 316
           +N R+RSAKLR   +
Sbjct: 301 YNPRARSAKLRIAEK 315


>gi|293376042|ref|ZP_06622295.1| S-adenosyl-methyltransferase MraW [Turicibacter sanguinis PC909]
 gi|325844610|ref|ZP_08168253.1| S-adenosyl-methyltransferase MraW [Turicibacter sp. HGF1]
 gi|292645343|gb|EFF63400.1| S-adenosyl-methyltransferase MraW [Turicibacter sanguinis PC909]
 gi|325489035|gb|EGC91422.1| S-adenosyl-methyltransferase MraW [Turicibacter sp. HGF1]
          Length = 310

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 107/309 (34%), Positives = 172/309 (55%), Gaps = 10/309 (3%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74
           + +H  VLL + I  L      + +D T G GG+S    K     ++ + D+D FA+   
Sbjct: 1   MFNHYSVLLRESIENLEIKEDGIYVDCTLGGGGHSSEILKRLTTGHLYSFDQDSFAIENA 60

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            + +++  + F++ ++ F  L++ +  +GV   DG++FDLGVSS Q D  +RGFS+    
Sbjct: 61  TKRLKEIGDNFTIIKSNFVHLKEELNARGVMKIDGIIFDLGVSSPQFDTPERGFSYNHDA 120

Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM     +SA ++VN+   K+L  I  +  +EK + +IA AI + R+  P +TT +
Sbjct: 121 KLDMRMDQEAELSAYEIVNEWEYKNLEYIFRVYSDEKFSKQIARAIERYREKQPIETTFE 180

Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I+  +   ++    HPA R+FQALRI VN+E++   + L+ A   L   G + V++
Sbjct: 181 LVEIIKSAIPAPARRKGGHPAKRTFQALRIAVNDELKVFEKALKDAMDMLNVEGRVAVIT 240

Query: 250 FHSLEDRLVKKFFASRS--GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           FHSLEDR+ K  F  RS    +     +IP    P  F+ IT+K +V  + ++  N RS 
Sbjct: 241 FHSLEDRICKHMFKERSEAKDLPRGLPVIPQEFQP-EFKLITRKPIVADETELTENNRSH 299

Query: 308 SAKLRAGMR 316
           SAKLR  M+
Sbjct: 300 SAKLRVAMK 308


>gi|153953806|ref|YP_001394571.1| S-adenosyl-methyltransferase MraW [Clostridium kluyveri DSM 555]
 gi|219854422|ref|YP_002471544.1| hypothetical protein CKR_1079 [Clostridium kluyveri NBRC 12016]
 gi|263447433|sp|B9E0V5|RSMH_CLOK1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|146346687|gb|EDK33223.1| MraW [Clostridium kluyveri DSM 555]
 gi|219568146|dbj|BAH06130.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 309

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 114/307 (37%), Positives = 172/307 (56%), Gaps = 9/307 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
            H+PVLL++ I  LN     V +D T G GG+S    K  S+   +IA+D+D  A++  +
Sbjct: 4   KHIPVLLKETIDSLNIKQDGVYVDCTLGGGGHSLEILKRLSDKGKLIAIDQDISAINWSE 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E ++++K         F  +Q  + +     VDG++ DLGVSS Q+D G RGFS+ K  P
Sbjct: 64  ERLKNFK-NIIYVHDNFYNIQQILKELKIDKVDGIIMDLGVSSYQLDEGKRGFSYMKDAP 122

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+  S +SA ++VNQ N ++L RI+   GEE  + RI+  IVK R+ +P  TT  L
Sbjct: 123 LDMRMNRDSSLSAYEIVNQYNEEELCRIIRDYGEENFSRRISKFIVKAREESPISTTLQL 182

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             +I+K +        HPA R+FQA+RI VN E++ L + +      L  GG + +++FH
Sbjct: 183 VGIIKKAIPLKFQKEGHPAKRTFQAIRIEVNEELKILDKAVEDGVANLNTGGRIAIITFH 242

Query: 252 SLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR++K  F              I       + + + KK +VPT+E+ + N RS+S+K
Sbjct: 243 SLEDRIIKSKFKMLENPCTCPADFPICICGKKPIVKIVNKKPIVPTEEEKSINPRSKSSK 302

Query: 311 LRAGMRT 317
           LR   R 
Sbjct: 303 LRIAERI 309


>gi|238924611|ref|YP_002938127.1| S-adenosyl-methyltransferase MraW [Eubacterium rectale ATCC 33656]
 gi|263433305|sp|C4ZD30|RSMH2_EUBR3 RecName: Full=Ribosomal RNA small subunit methyltransferase H 2;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase 2;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH 2
 gi|238876286|gb|ACR75993.1| S-adenosyl-methyltransferase MraW [Eubacterium rectale ATCC 33656]
          Length = 314

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 98/309 (31%), Positives = 166/309 (53%), Gaps = 10/309 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            H  VL ++ I  LN  P  + +D T G  G+S    K       +I +D+D  A+    
Sbjct: 4   KHYSVLRDETIENLNIRPDGIYVDGTLGGAGHSYEIAKRLSDKGRLIGIDQDADAIKAAG 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK-SG 131
           E + ++ ++ ++ ++ +S +++ +   G   VDG++ DLGVSS Q+D   RGF+++    
Sbjct: 64  ERLAEFGDRVTIVRSNYSDMKNVLHSLGIEKVDGIMLDLGVSSFQLDTPKRGFTYRSEDA 123

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM   + ++A D+VN  +  DL RI+   GE+K A  IA  IV  RQ     TT +
Sbjct: 124 PLDMRMDDRNALTARDIVNTYSENDLYRIIRDYGEDKFAKNIAKHIVAARQKQEITTTGE 183

Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I+  +    +    HP+ R++QA+RI +N+E++ L   L      L  GG + +++
Sbjct: 184 LNEIIKAAIPQKVRATGGHPSKRTYQAIRIELNHELDVLRDNLDDMIDLLNPGGRICIIT 243

Query: 250 FHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK  F              +    + +    IT+K ++P+++++  N RS+S
Sbjct: 244 FHSLEDRIVKSNFKKNENPCTCPPSFPVCVCGNKSKGTVITRKPILPSEKELEENSRSKS 303

Query: 309 AKLRAGMRT 317
           AKLR   + 
Sbjct: 304 AKLRVFEKN 312


>gi|270291462|ref|ZP_06197684.1| methylase MraW [Pediococcus acidilactici 7_4]
 gi|304385176|ref|ZP_07367522.1| S-adenosyl-methyltransferase MraW [Pediococcus acidilactici DSM
           20284]
 gi|270280308|gb|EFA26144.1| methylase MraW [Pediococcus acidilactici 7_4]
 gi|304329370|gb|EFL96590.1| S-adenosyl-methyltransferase MraW [Pediococcus acidilactici DSM
           20284]
          Length = 317

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 116/316 (36%), Positives = 179/316 (56%), Gaps = 13/316 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72
           T   H  VLLE+ +A LN     V +D T G GG+S+          ++ + D+D  A+ 
Sbjct: 2   TEFKHTTVLLEETVAGLNIRKDGVYVDCTLGGGGHSQLILSKLGSTGHLYSFDQDQTAID 61

Query: 73  CGQETMRDY--KEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSF 127
             Q+ +  Y   +Q +  +A F  L++ +  +G   VDG+++DLGVSS Q D   RGFS+
Sbjct: 62  YNQDHLAPYIANQQVTFIKANFRNLKNELNQRGIDHVDGILYDLGVSSPQFDDAQRGFSY 121

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           +   PLDMRM  S  ++A  VVN+ +  DL RI    GEEK A ++A  I K R+  P  
Sbjct: 122 RYDAPLDMRMDQSQELTAQAVVNEWSYNDLVRIFFRYGEEKYAKQVARRIEKVREQHPIV 181

Query: 187 TTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           TT +L  +I++ +  + +    HPA R FQA+RI VN+E+  L + L  A   L   G +
Sbjct: 182 TTGELVEIIKEAIPAAARRTGGHPAKRVFQAIRIAVNDELGALEESLEQALDLLNDNGRI 241

Query: 246 IVVSFHSLEDRLVKKFFASRS--GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            V++F SLEDRLVK+ F  ++  G + A   +IP++  P  F+ + +K +VP+++++  N
Sbjct: 242 SVITFQSLEDRLVKRMFKEKTEIGDLPAGLPVIPADKKPH-FKLVNRKPIVPSEDELKEN 300

Query: 304 RRSRSAKLRAGMRTVE 319
           RR+ SAKLR   +  E
Sbjct: 301 RRAHSAKLRIIEKLQE 316


>gi|229104481|ref|ZP_04235148.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus Rock3-28]
 gi|228678923|gb|EEL33133.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus Rock3-28]
          Length = 310

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 111/309 (35%), Positives = 170/309 (55%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73
           +  HV VLL++ +  L+  P    +D T G GG+S         G  +IA D+D  A+  
Sbjct: 1   MFKHVTVLLKETVDGLDIKPDGTYVDCTLGGGGHSSYLLSQLTDGGKLIAFDQDEIAIQN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E    Y EQF   ++ F  L + + + G   VDG++FDLGVSS Q+D  +RGFS+   
Sbjct: 61  AKEKFSSYGEQFITVKSNFRYLSEKLQELGITEVDGILFDLGVSSPQLDTPERGFSYHHD 120

Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM     ++A DV+N  + + L RI    GEEK + +IA  I   R++   +TT 
Sbjct: 121 APLDMRMDQDAPLTAYDVINSWSYEQLVRIFFQYGEEKFSKQIARKIEAYRENKAIETTG 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  LI++ +   ++    HPA R FQA+RI VN+E++   + L SA + +K GG + V+
Sbjct: 181 ELVELIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIEMVKPGGRVSVI 240

Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F   S    +     I  +      + IT+K ++P+  ++  N R+R
Sbjct: 241 TFHSLEDRICKTTFKRNSTTPPLPPGLPIIPDEFKPKLKLITRKPILPSDIELEENNRAR 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRIAEK 309


>gi|149181747|ref|ZP_01860239.1| S-adenosyl-methyltransferase MraW [Bacillus sp. SG-1]
 gi|148850595|gb|EDL64753.1| S-adenosyl-methyltransferase MraW [Bacillus sp. SG-1]
          Length = 310

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 104/309 (33%), Positives = 175/309 (56%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSC 73
           + +H  VLL++ +  L+     V +D T G  G+S        +   +   D+D  A+  
Sbjct: 1   MFEHTTVLLKETVDGLDIKEDGVYVDCTLGGAGHSEYLVSQLGVTGKLYCFDQDQTAIDH 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E +  Y ++ +  ++ F  +++ + ++GV   DGV+FDLGVSS Q+D  +RGFS+   
Sbjct: 61  AKEKLAPYLDRVTFIRSNFRFIKEELAERGVHQVDGVMFDLGVSSPQLDTPERGFSYHHD 120

Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM   G ++A +VVNQ   + L RI    GEEK + +IA  I   R+    +TT 
Sbjct: 121 APLDMRMDLEGDLTAHEVVNQWPYEKLVRIFFRYGEEKFSKQIARKIEAAREIKSIETTG 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  LI++ +   ++    HPA R FQA+RI VN+E++ + + L  + + LK  G + V+
Sbjct: 181 ELVDLIKEGIPAPARRKGGHPAKRVFQAIRIAVNDELDAVEEALEKSIEILKPSGRISVI 240

Query: 249 SFHSLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F  + SG  +     +  +A+    + +T+K ++P++E++  N R+R
Sbjct: 241 TFHSLEDRITKTLFKEKASGPDLPHGLPVIPDAYKPELKLVTRKPILPSEEELERNNRAR 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRVAEK 309


>gi|291522688|emb|CBK80981.1| S-adenosyl-methyltransferase MraW [Coprococcus catus GD/7]
          Length = 313

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 96/312 (30%), Positives = 165/312 (52%), Gaps = 9/312 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSC 73
              H  VLL + I  L+     + +D T G GG++ +  +       +I +D+D  A+  
Sbjct: 2   TFQHYSVLLNETIEQLDIKENGIYVDGTLGGGGHASAVLQRLGETGRLIGIDQDAAAIEA 61

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
             E +  + ++ ++ ++ +S +   + D    GVDG+V DLGVSS Q+D  +RGF++++ 
Sbjct: 62  AGERLAPFGDKVTIVRSNYSAMPQVLADLGIHGVDGIVLDLGVSSYQLDTVERGFTYRED 121

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM      +A D+VN     +L  ++   GE+K A  IA  IV  R+  P +TT 
Sbjct: 122 TVLDMRMDQRQTKTARDIVNDYTETELFHMIRDYGEDKFARNIAKHIVMAREKKPIETTG 181

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L+ +I+  +    +    HP+ +++QA+RI +N+E++ L   L      L   G + V+
Sbjct: 182 ELNDIIRAAIPAKVRAKGGHPSKKTYQAIRIELNHELDVLKNTLDQMIDLLNDHGRICVI 241

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+VK  F +            +      +  + IT+K ++P++E++  N RS+
Sbjct: 242 TFHSLEDRIVKNIFNTNERPCTCPPSFPVCVCGKKSKGRVITRKPILPSEEELEVNSRSK 301

Query: 308 SAKLRAGMRTVE 319
           SAKLR   R  E
Sbjct: 302 SAKLRVFERIRE 313


>gi|160935714|ref|ZP_02083089.1| hypothetical protein CLOBOL_00604 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441458|gb|EDP19168.1| hypothetical protein CLOBOL_00604 [Clostridium bolteae ATCC
           BAA-613]
          Length = 315

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 98/312 (31%), Positives = 176/312 (56%), Gaps = 8/312 (2%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFA 70
           +  +   H  VLL + +  LN  PG + +D T G GG++   CK      +I +D+D  A
Sbjct: 1   MEESTFVHKSVLLYETVGSLNIKPGGLYVDGTLGGGGHAYEVCKRLGSGKLIGIDQDADA 60

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSF 127
           +    + +  ++++ ++ ++ ++ +++ + +   +GVDG+  DLGVSS Q+D   RGF++
Sbjct: 61  IEAAGKRLLPFQDKVTIVRSNYANIKEVLKELEIEGVDGIYLDLGVSSYQLDTASRGFTY 120

Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           ++  PLDMRM   + ++A+ ++N  +  +L RI+   GE+  A  IA  IV+ R   P +
Sbjct: 121 REDAPLDMRMDQRNDVTAAHIINTYSEMELYRIIRDYGEDNFAKNIAKHIVRARGEHPIE 180

Query: 187 TTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           TT +L+ +I+  +    +    HPA R+FQA+RI  N+E+E L Q + +    L  GG L
Sbjct: 181 TTGELAEIIKGAIPARVRATGGHPAKRTFQAIRIECNHELEVLEQSIDTMIDLLNPGGRL 240

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
            +++FHSLEDR+VK  F       +      +      +  + +++K ++P++E++  N 
Sbjct: 241 SIITFHSLEDRIVKSRFRLNENPCICPHDFPVCVCGRKSKGKVVSRKPILPSEEELEENS 300

Query: 305 RSRSAKLRAGMR 316
           RS+SAKLR   R
Sbjct: 301 RSKSAKLRVFER 312


>gi|225019362|ref|ZP_03708554.1| hypothetical protein CLOSTMETH_03315 [Clostridium methylpentosum
           DSM 5476]
 gi|224947993|gb|EEG29202.1| hypothetical protein CLOSTMETH_03315 [Clostridium methylpentosum
           DSM 5476]
          Length = 307

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 118/303 (38%), Positives = 177/303 (58%), Gaps = 7/303 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77
           H  VLLE+ +  LN  P  + +D T G  G+SR   K      + + DRDP A++   E 
Sbjct: 5   HTSVLLEECLEGLNIRPDGIYVDGTTGGAGHSREIAKRLTTGRLYSFDRDPDAIAVASER 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +  Y     L  A FS +   +  +GV   DGV+ DLGVSS Q+D  +RGFS+   G LD
Sbjct: 65  LAQYPCS-ELVHANFSTMDAELAKRGVNQVDGVLLDLGVSSFQLDTAERGFSYLNDGILD 123

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRMS SG+SA ++VN    ++L RI+   GEEK    IA  IV++R+  P +TT+ LS +
Sbjct: 124 MRMSKSGLSAREMVNTYPAEELARIIRDYGEEKYYYSIAKNIVRQREVQPIETTRQLSEI 183

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           +  ++        +P+ R+FQA+RI VN E++ L+QGL +A   L +GG L+V++FHSLE
Sbjct: 184 VNSSMPAKARREKNPSKRTFQAIRIAVNEELDSLSQGLENAFSVLSSGGRLVVITFHSLE 243

Query: 255 DRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           DR+VK+F A      +      I    +    + + KK ++P+++++A NRRS+SAKLR 
Sbjct: 244 DRIVKQFNAKMCQGCICPPDFPICVCNNRPKARLVNKKPILPSEQELAHNRRSQSAKLRI 303

Query: 314 GMR 316
             +
Sbjct: 304 LEK 306


>gi|160880611|ref|YP_001559579.1| S-adenosyl-methyltransferase MraW [Clostridium phytofermentans
           ISDg]
 gi|263433295|sp|A9KM86|RSMH2_CLOPH RecName: Full=Ribosomal RNA small subunit methyltransferase H 2;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase 2;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH 2
 gi|160429277|gb|ABX42840.1| S-adenosyl-methyltransferase MraW [Clostridium phytofermentans
           ISDg]
          Length = 317

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 103/314 (32%), Positives = 178/314 (56%), Gaps = 9/314 (2%)

Query: 12  AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDP 68
           ++      H+ VLL++ I  LN  P  + +D T G GG++    K        I +D+D 
Sbjct: 2   SLEEKEFKHISVLLQETIDSLNIKPDGIYVDGTLGGGGHAYEVLKRLSPKGRYIGIDQDE 61

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGF 125
            A++   + + ++ +Q ++ ++ +  ++  + D G   VDG++ DLGVSS Q+D  +RGF
Sbjct: 62  DAIAAAGKRLSEFSDQVTIVRSNYCNMKQVLKDLGIDKVDGILLDLGVSSYQLDTPERGF 121

Query: 126 SFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           S++++ PLDMRM   + ++A D+VN+ + +++ RI+   GE+K A  IA  IV+ R   P
Sbjct: 122 SYRENAPLDMRMDNRNSLTARDIVNEYSEQEIYRIIRDYGEDKFAKNIAKHIVRMRSEKP 181

Query: 185 FQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
            +TT +L+  I+  +    + N  HPA ++FQA+RI +N+E+E L   L      LK  G
Sbjct: 182 LETTDELTEAIKAAIPMKIRMNTGHPAKKTFQAIRIELNHELEVLTNTLEDMIDLLKEDG 241

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
            L +++FHSLEDR+VK  F       +      +           ITKK ++P+++++ +
Sbjct: 242 RLSIITFHSLEDRIVKAAFRKNENPCVCPPNFPVCVCNRKPKGIHITKKPILPSEQELEY 301

Query: 303 NRRSRSAKLRAGMR 316
           N+RS+SAKLR   +
Sbjct: 302 NKRSKSAKLRVFEK 315


>gi|18310847|ref|NP_562781.1| S-adenosyl-methyltransferase MraW [Clostridium perfringens str. 13]
 gi|20138978|sp|Q8XJ96|RSMH_CLOPE RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|18145529|dbj|BAB81571.1| conserved hypothetical protein [Clostridium perfringens str. 13]
          Length = 310

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 111/307 (36%), Positives = 169/307 (55%), Gaps = 10/307 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            HV VLL++ I  LN     + +D T G  G+S    K       +I  D+D  A+    
Sbjct: 4   KHVSVLLDECINALNIKEDGIYVDCTLGGAGHSSEIVKRLSSDGRLIRFDQDKDALKAAG 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E ++DYK   +   + F  + D + D    GVDG++ DLGVSS Q+D G+RGFS+ +  P
Sbjct: 64  ERLKDYK-NVTYVHSNFYAIYDVLTDLGIDGVDGILMDLGVSSYQLDNGERGFSYMQDAP 122

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+  +  SA ++VN  + ++L RI+   GEEK A RIA  IVK R+    +TT +L
Sbjct: 123 LDMRMNRENEFSAYEIVNTYSEEELYRIIKEYGEEKFAKRIASFIVKNREEKNIETTLEL 182

Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+  +    +    HPA R+FQA+RI VN E+E +++ +    K L  GG + +++F
Sbjct: 183 VEIIKAAIPAKARREGPHPAKRTFQAIRIEVNKELEIISKTILDGVKKLNKGGRMAIITF 242

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  F   +          +         + I++K +  ++E++ FN RSRSA
Sbjct: 243 HSLEDRIVKNTFKELANPCTCPSEFPVCVCNRKPEVKLISRKPIEASKEELEFNPRSRSA 302

Query: 310 KLRAGMR 316
           KLR   +
Sbjct: 303 KLRIIEK 309


>gi|239826514|ref|YP_002949138.1| S-adenosyl-methyltransferase MraW [Geobacillus sp. WCH70]
 gi|263455972|sp|C5D8L5|RSMH_GEOSW RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|239806807|gb|ACS23872.1| S-adenosyl-methyltransferase MraW [Geobacillus sp. WCH70]
          Length = 310

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 107/310 (34%), Positives = 174/310 (56%), Gaps = 11/310 (3%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H  VLL++ +  L+  P  + +D T G GG+S            + A D+D  A+  
Sbjct: 1   MFQHTTVLLKEAVDGLHIKPDGIYVDCTLGGGGHSEYLLSQLSEDGRLFAFDQDDMAIEY 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130
            ++ +  Y++Q +  +  F  L + +  +GV   DG++FDLGVSS Q+D  +RGFS+   
Sbjct: 61  AKKRLARYEKQVTFIRRNFRFLAEELTARGVHRVDGILFDLGVSSPQLDTPERGFSYHHD 120

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM+    ++A D+VN    ++L  I    GEEK + ++A  I + R+    +TT 
Sbjct: 121 APLDMRMNREQSLTAYDIVNHWPYEELVHIFFHYGEEKFSKQVARKIEEVRKEKRIETTG 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L  +I++ +   ++ +  HPA R FQA+RI VN+E++   + +  A   LK+GG + V+
Sbjct: 181 QLVDIIKEAIPAPARRSGGHPAKRIFQAIRIAVNDELQAFKEAITQAIDLLKSGGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           +FHSLEDR+ K  F   S   ++     +IP    PA  + ITKK +VP++E++  N R+
Sbjct: 241 TFHSLEDRICKVAFKEASQGPQLPPGLPLIPDQYRPA-LKIITKKPIVPSEEEIEHNHRA 299

Query: 307 RSAKLRAGMR 316
           RSAKLR   +
Sbjct: 300 RSAKLRIAEK 309


>gi|294501027|ref|YP_003564727.1| S-adenosyl-methyltransferase MraW [Bacillus megaterium QM B1551]
 gi|294350964|gb|ADE71293.1| S-adenosyl-methyltransferase MraW [Bacillus megaterium QM B1551]
          Length = 311

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 114/312 (36%), Positives = 177/312 (56%), Gaps = 11/312 (3%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSC 73
           + +H  VLL++    LN  P  V +D T G  G+S            +IA D+D  A++ 
Sbjct: 1   MFNHTTVLLKEAAEGLNIKPDGVYVDCTLGGAGHSEYIVKQLSEKGKLIAFDQDDVALAN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E +  Y ++  L ++ F  L++ +   G   VDGV+FDLGVSS Q+D  +RGFSF   
Sbjct: 61  AKEKLAPYLDRVILIKSNFRYLKEQLMKHGIEEVDGVLFDLGVSSPQLDTPERGFSFHHD 120

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM  + + SA +VVN+   + L +I    GEEK + +IA  I   R+S P +TT 
Sbjct: 121 APLDMRMDQNSMFSAYNVVNEWPYEKLVKIFFQYGEEKFSKQIARKIEAYRESKPIETTL 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  LI+  +   ++    HPA R FQA+RI VN+E++     +  A   +K GG + V+
Sbjct: 181 ELVDLIKDGIPAPARRTGGHPAKRIFQAIRIAVNDELQVFEDAIEQAMDVIKKGGRVSVI 240

Query: 249 SFHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           +FHSLEDR+ K  F + S   ++     +IP    P + + IT+K ++P++E++  N+R+
Sbjct: 241 TFHSLEDRICKVAFKNASTVPQLPHGLPIIPEEFKPKM-KVITRKPILPSEEEIEENKRA 299

Query: 307 RSAKLRAGMRTV 318
           RSAKLR   + V
Sbjct: 300 RSAKLRIVEKLV 311


>gi|300811319|ref|ZP_07091816.1| S-adenosyl-methyltransferase MraW [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300497683|gb|EFK32708.1| S-adenosyl-methyltransferase MraW [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 314

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 106/310 (34%), Positives = 168/310 (54%), Gaps = 12/310 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76
            H  VLL + I  L P  G   +DATFG GG++R         N+I  D+D +A+   Q 
Sbjct: 4   KHTSVLLHETIDNLAPQSGGTYVDATFGGGGHARYLLSKLDKGNLIGFDQDQYAIDTAQS 63

Query: 77  TMRDY-----KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
               +     + +  L    FS L++ +      G+DG+ +DLGVSS Q+D  +RGFS++
Sbjct: 64  NFAAFLKEDSQPRLQLVHNNFSHLKEELAKLRISGIDGIYYDLGVSSPQLDQAERGFSYR 123

Query: 129 KSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
               LDMRM  S    A  +VNQ + K L  +L   G+EK + +IA  IV+RR++ P +T
Sbjct: 124 FDARLDMRMDQSQDFDAYQLVNQYDQKQLADVLYRYGDEKFSRQIARKIVERRRAKPIET 183

Query: 188 TQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T +L  +I++ +  + + +  HPA +SFQA+R+ VN+E++ L   L  A   L  GG + 
Sbjct: 184 TFELVEIIKEAIPAAARRSGGHPAKKSFQAIRVEVNHELDVLRASLEEAISLLNPGGRIS 243

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V++F SLED++VK+ F   S   +     +         + + +K +  ++E++A N RS
Sbjct: 244 VITFQSLEDKIVKQTFKKYSEVEIPRGMPVVPEGIKPTLRLVNRKPITASEEELAENNRS 303

Query: 307 RSAKLRAGMR 316
            SAKLR   +
Sbjct: 304 HSAKLRVAEK 313


>gi|302671225|ref|YP_003831185.1| S-adenosyl-methyltransferase MraW [Butyrivibrio proteoclasticus
           B316]
 gi|302395698|gb|ADL34603.1| S-adenosyl-methyltransferase MraW [Butyrivibrio proteoclasticus
           B316]
          Length = 313

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 95/310 (30%), Positives = 162/310 (52%), Gaps = 9/310 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQ 75
            H  VLL + +  LN  P  + LD T G  G+S         G ++   D+D  A++   
Sbjct: 4   KHYSVLLHECLDNLNIKPDGIYLDGTLGGAGHSFHIAERLDKGGHLYGTDQDEDAIAAAT 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + +  + ++ ++ +  +      + +    GVDG++ DLGVSS Q+D  +RGF++++  P
Sbjct: 64  KRLEPFSDRVTIIRDNYENAVTRLKNLGVTGVDGILLDLGVSSYQLDNAERGFTYKEDVP 123

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM     ++A D+VN  +  ++  I+   GE+K A  IA  I   R  AP +TT  L
Sbjct: 124 LDMRMDQRQTLTARDIVNDYSETEIFHIIRDYGEDKFAKNIAKHICIERAKAPIETTFQL 183

Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           + +I+  +    +    HP+ R++QA+RI +N E++ L   L      L  GG L V++F
Sbjct: 184 NDIIKAAIPAKMREKGGHPSKRTYQAIRIALNRELDVLQNSLDGFIDFLNPGGRLCVITF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+ K  F +            +      +  + +T+K ++P+ +++A N+RS+SA
Sbjct: 244 HSLEDRITKNNFRTNENPCTCPPNFPVCVCGKKSKGRVVTRKPILPSDQELAENKRSQSA 303

Query: 310 KLRAGMRTVE 319
           KLR   +  E
Sbjct: 304 KLRVFEKVSE 313


>gi|308181002|ref|YP_003925130.1| cell division protein MraW [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|308046493|gb|ADN99036.1| cell division protein MraW [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 319

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 117/313 (37%), Positives = 168/313 (53%), Gaps = 13/313 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72
              +H  VLL + IA LN  P  + +D T G GG+SR   +      ++ + D+D  A+ 
Sbjct: 2   ATFEHTTVLLHEAIAALNVRPDGIYVDCTLGGGGHSREILQQLGPEGHLYSFDQDQTAID 61

Query: 73  CGQETMRDYKEQ--FSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSF 127
             Q  +  Y E+   +  ++ F+ L+  +  +G   VDGVV+DLGVSS Q D   RGFS+
Sbjct: 62  YNQSNLATYLERGQVTFIKSNFANLKTELNARGLDHVDGVVYDLGVSSPQFDDAARGFSY 121

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           Q   PLDMRM  S  ++A  VVN     DL RI    GEEK + ++A  I + R   P  
Sbjct: 122 QHDAPLDMRMDQSQKLTAQTVVNTWPYADLVRIFYRYGEEKFSKQVARLIERERAVQPIV 181

Query: 187 TTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           TT  L  +I+  +    +    HPA R FQA+RI VNNE+  L   L  A   +   G +
Sbjct: 182 TTGQLVEIIKNAIPARARRTGGHPAKRVFQAIRIAVNNELGVLETSLEQAIDLINVHGRV 241

Query: 246 IVVSFHSLEDRLVKKFFASRS--GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            V++F SLEDRLVK  F   S   ++     +IP+   P  ++ +++K VVP+  ++  N
Sbjct: 242 SVITFQSLEDRLVKTIFKEHSDLPELPPGLPVIPAEMQP-DYRLVSRKPVVPSDAEIEAN 300

Query: 304 RRSRSAKLRAGMR 316
           RR+RSAKLRA  R
Sbjct: 301 RRARSAKLRAIER 313


>gi|28378805|ref|NP_785697.1| cell division protein MraW [Lactobacillus plantarum WCFS1]
 gi|38258035|sp|Q88V76|RSMH_LACPL RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|28271642|emb|CAD64548.1| cell division protein MraW [Lactobacillus plantarum WCFS1]
          Length = 319

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 117/313 (37%), Positives = 168/313 (53%), Gaps = 13/313 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72
              +H  VLL + IA LN  P  + +D T G GG+SR   +      ++ + D+D  A+ 
Sbjct: 2   ATFEHTTVLLHEAIAALNVRPDGIYVDCTLGGGGHSREILQQLGLEGHLYSFDQDQTAID 61

Query: 73  CGQETMRDYKEQ--FSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSF 127
             Q  +  Y E+   +  ++ F+ L+  +  +G   VDGVV+DLGVSS Q D   RGFS+
Sbjct: 62  YNQSNLATYLERGQVTFIKSNFANLKTELNARGLDHVDGVVYDLGVSSPQFDDAARGFSY 121

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           Q   PLDMRM  S  ++A  VVN     DL RI    GEEK + ++A  I + R   P  
Sbjct: 122 QHDAPLDMRMDQSQKLTAQTVVNTWPYADLVRIFYRYGEEKFSKQVARLIERERAVQPIV 181

Query: 187 TTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           TT  L  +I+  +    +    HPA R FQA+RI VNNE+  L   L  A   +   G +
Sbjct: 182 TTGQLVEIIKNAIPARARRTGGHPAKRVFQAIRIAVNNELGVLETSLEQAIDLINVHGRV 241

Query: 246 IVVSFHSLEDRLVKKFFASRS--GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            V++F SLEDRLVK  F   S   ++     +IP+   P  ++ +++K VVP+  ++  N
Sbjct: 242 SVITFQSLEDRLVKTIFKEHSDLPELPPGLPVIPAEMQP-DYRLVSRKPVVPSDAEIEAN 300

Query: 304 RRSRSAKLRAGMR 316
           RR+RSAKLRA  R
Sbjct: 301 RRARSAKLRAIER 313


>gi|153809802|ref|ZP_01962470.1| hypothetical protein RUMOBE_00183 [Ruminococcus obeum ATCC 29174]
 gi|149833980|gb|EDM89060.1| hypothetical protein RUMOBE_00183 [Ruminococcus obeum ATCC 29174]
          Length = 313

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 103/307 (33%), Positives = 167/307 (54%), Gaps = 9/307 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            H  VLLE+ I  L   P    +D T G  G+++  C+        I +D+D  A+    
Sbjct: 4   KHKSVLLEETIDGLRVKPDGTYVDGTLGGAGHAQEVCRRLSAKGRFIGIDQDQDAIVAAS 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E +  Y ++  + ++ +  + + + + G   VDG+V DLGVSS Q+D  +RGF+++   P
Sbjct: 64  ERLSAYGDRVQIIRSNYCYMANELKNLGIQKVDGIVLDLGVSSYQLDNEERGFTYRVDAP 123

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM      +A+D+VN  + ++L RI+   GE+K A  IA  IV  R  AP QTT +L
Sbjct: 124 LDMRMDQRQSRTAADIVNGYDERELYRIIRDYGEDKFAKNIAKHIVAARAKAPIQTTGEL 183

Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           + +I++++    +    HPA R+FQA+RI +N E++ L + L      L  GG + +++F
Sbjct: 184 TEIIRQSIPMKIQATGGHPAKRTFQAIRIELNRELDVLRESLDGMIDLLDDGGRICIITF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  F              +      +  + IT+K ++P++ ++  N RS+SA
Sbjct: 244 HSLEDRIVKTIFRKNENPCTCPPDFPVCVCGKKSKGKVITRKPILPSETEMEENPRSKSA 303

Query: 310 KLRAGMR 316
           KLR   R
Sbjct: 304 KLRIFER 310


>gi|39998167|ref|NP_954118.1| S-adenosyl-methyltransferase MraW [Geobacter sulfurreducens PCA]
 gi|42559425|sp|P60396|RSMH_GEOSL RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|39985113|gb|AAR36468.1| S-adenosyl-methyltransferase MraW [Geobacter sulfurreducens PCA]
 gi|298507105|gb|ADI85828.1| SAM-dependent membrane protein methyltransferase MraW [Geobacter
           sulfurreducens KN400]
          Length = 311

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 122/306 (39%), Positives = 173/306 (56%), Gaps = 9/306 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H PV+  +V+  L+P PG V +D T G  G++R   +  S    +I  DRDP A+   +E
Sbjct: 5   HRPVMPAEVLEYLSPRPGGVYVDGTLGGAGHARLILEATSPDGMLIGFDRDPAALEVARE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  + E+F      FS++   + + GVDGV   + D+GVSS Q+D  +RGFSF    PL
Sbjct: 65  RLALFGERFRPVPGNFSEMGRVLAELGVDGVDGFLLDVGVSSHQLDTAERGFSFLTDAPL 124

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+     +A+D+VN  N  +L RI+   GEE+ A RIA  IVK R   P + T  L 
Sbjct: 125 DMRMNTLVPGTAADLVNDLNEHELARIIKEYGEERWARRIASFIVKARVDGPIERTLQLV 184

Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  +   +   RIHPATR+FQALRI VN+E+  L +GL SA   L+ GG  +V+SFH
Sbjct: 185 DIIKGAIPRGAWEERIHPATRTFQALRIAVNDELGSLERGLESALGLLRPGGRGVVISFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK  F   +      + +           + +T + VV    +VA N R+RSAK
Sbjct: 245 SLEDRIVKTMFRRYAQGCTCPKELPRCVCGGVPRLRILTGRPVVAGDVEVAENPRARSAK 304

Query: 311 LRAGMR 316
           LRA  +
Sbjct: 305 LRAAEK 310


>gi|241888447|ref|ZP_04775758.1| S-adenosyl-methyltransferase MraW [Gemella haemolysans ATCC 10379]
 gi|241864889|gb|EER69260.1| S-adenosyl-methyltransferase MraW [Gemella haemolysans ATCC 10379]
          Length = 311

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 108/307 (35%), Positives = 166/307 (54%), Gaps = 8/307 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74
           +  H  VLL + +  L+     + +D T G  G+S    K      + A D+D  A+   
Sbjct: 1   MFKHYSVLLNEAVEGLDIKEDGIYVDCTLGGAGHSLEILKRLKNGKLYAFDQDNVALENA 60

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +E + +Y ++    ++ F  L++ + + GV   DGV++DLGVSS Q+D  +RGFS+    
Sbjct: 61  KEKLAEYSDKVVFIKSNFVNLKEKLAEHGVNEVDGVLYDLGVSSPQLDTPERGFSYNYDT 120

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM     ISA +VVN+ +  DL +I    GEE  + +IA  I K+R+  P +TT +
Sbjct: 121 RLDMRMDTDAKISAYEVVNEYSYHDLVKIFYRYGEENFSKQIARNIEKKREQKPIETTFE 180

Query: 191 LSSLIQKTVYFSKNN-RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I++++  +K     HPA R FQA+RI VNNE+      L  A   +  GG + V++
Sbjct: 181 LVEIIKESIPAAKRRTGGHPAKRVFQAIRIAVNNELSVFEDSLEQAIDIVSVGGRISVIT 240

Query: 250 FHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+ K+ F S S  K +     I      +  + IT+K + P+  ++  N RSRS
Sbjct: 241 FHSLEDRICKQIFNSYSKSKDIPKNLPIMPEESLSKLKVITRKPIYPSDIELEENNRSRS 300

Query: 309 AKLRAGM 315
           AKLR   
Sbjct: 301 AKLRVAQ 307


>gi|253699149|ref|YP_003020338.1| S-adenosyl-methyltransferase MraW [Geobacter sp. M21]
 gi|263455964|sp|C6DZJ8|RSMH_GEOSM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|251773999|gb|ACT16580.1| S-adenosyl-methyltransferase MraW [Geobacter sp. M21]
          Length = 312

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 116/308 (37%), Positives = 171/308 (55%), Gaps = 9/308 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
            H+ VL ++V+  L+P  G V +D T G  G++            +I  DRD  A++  +
Sbjct: 5   HHISVLPDEVLQALSPKSGGVYVDGTLGGAGHAGLILTASAPEGRLIGFDRDEEAIAVAR 64

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVV---FDLGVSSMQIDCGDRGFSFQKSGP 132
           + +  +  +  +    F+ +   + + GVDG+     DLGVSS Q+D  +RGFSF    P
Sbjct: 65  QRLSVFGGRVRIIHRNFAGIAQALAEIGVDGIDGFVLDLGVSSHQLDRDERGFSFMHDAP 124

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM   SG SA+D+VN     +L RI+   GEE+ A R+A  IVK R   P +TT +L
Sbjct: 125 LDMRMDRSSGQSAADLVNTLPEAELYRIISEYGEERWAKRVASFIVKARDERPIETTLEL 184

Query: 192 SSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+  +  +K   R+HPATR+FQALRI VN E++ L +GL+     LK GG   V+SF
Sbjct: 185 VDVIKGAIPKAKWEERLHPATRTFQALRIAVNEELKSLEEGLQGLLSLLKQGGRGAVISF 244

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK+ F + +      +   I        F+ +T+K +   + +VA N RSRSA
Sbjct: 245 HSLEDRIVKEGFRAAATGCTCPKELPICVCGRVPRFKLVTRKPITAGESEVAANPRSRSA 304

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 305 KLRVVEKI 312


>gi|254557010|ref|YP_003063427.1| cell division protein MraW [Lactobacillus plantarum JDM1]
 gi|254045937|gb|ACT62730.1| cell division protein MraW [Lactobacillus plantarum JDM1]
          Length = 319

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 117/313 (37%), Positives = 168/313 (53%), Gaps = 13/313 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72
              +H  VLL + IA LN  P  + +D T G GG+SR   +      ++ + D+D  A+ 
Sbjct: 2   ATFEHTTVLLHEAIAALNVRPDGIYVDCTLGGGGHSREILQQLGPEGHLYSFDQDQTAID 61

Query: 73  CGQETMRDYKEQ--FSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSF 127
             Q  +  Y E+   +  ++ F+ L+  +  +G   VDGVV+DLGVSS Q D   RGFS+
Sbjct: 62  YNQSNLATYLERGQVTFIKSNFANLKTELNARGLDHVDGVVYDLGVSSPQFDDAARGFSY 121

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           Q   PLDMRM  S  ++A  VVN     DL RI    GEEK + ++A  I + R   P  
Sbjct: 122 QHDAPLDMRMDQSQKLTAQTVVNTWPYADLVRIFYRYGEEKFSKQVARLIERERVVQPIV 181

Query: 187 TTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           TT  L  +I+  +    +    HPA R FQA+RI VNNE+  L   L  A   +   G +
Sbjct: 182 TTGQLVEIIKNAIPARARRTGGHPAKRVFQAIRIAVNNELGVLETSLEQAIDLINVHGRV 241

Query: 246 IVVSFHSLEDRLVKKFFASRS--GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            V++F SLEDRLVK  F   S   ++     +IP+   P  ++ +++K VVP+  ++  N
Sbjct: 242 SVITFQSLEDRLVKTIFKEHSDLPELPPGLPVIPAEMQP-DYRLVSRKPVVPSDAEIEAN 300

Query: 304 RRSRSAKLRAGMR 316
           RR+RSAKLRA  R
Sbjct: 301 RRARSAKLRAIER 313


>gi|51892339|ref|YP_075030.1| S-adenosyl-methyltransferase MraW [Symbiobacterium thermophilum IAM
           14863]
 gi|116241373|sp|Q67Q57|RSMH_SYMTH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|51856028|dbj|BAD40186.1| putative S-adenosylmethionine-dependent methyltransferase
           [Symbiobacterium thermophilum IAM 14863]
          Length = 318

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 108/307 (35%), Positives = 173/307 (56%), Gaps = 9/307 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
            H+PVLL++ +  L   PG   +D T G GG++    +       +I LD+D  A+    
Sbjct: 4   HHIPVLLQETMEALAVRPGGTYIDCTVGGGGHAAEILRRSSPDGRLIGLDQDENALRAAG 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + +  + ++ +L +  F  + D     G+   DGV+ D+GVSS Q D G+RGFS+    P
Sbjct: 64  DRLAPFGDRVTLVRTNFEHVADVADRLGLGAADGVLMDIGVSSHQFDEGERGFSYHHDAP 123

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  +  ++A+ +VN+   +++ R++   GEE+ ASRIA  IV+ R+  P +TT  L
Sbjct: 124 LDMRMDRTRPLTAAVLVNEWEEEEIARVIREYGEERWASRIAQFIVRARRQRPIETTGQL 183

Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+  +   ++    HPA R+FQA+RI VN+E+  L +GL  A + L+ GG L V++F
Sbjct: 184 VEIIKAAIPASARREGGHPARRTFQAIRIAVNDELGALERGLEGALRVLRPGGRLAVITF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK+ FA  +          +       + + +T+K V  +  +V  N RSRSA
Sbjct: 244 HSLEDRIVKQTFARWAKPCTCPPDLPVCVCGKAPLAEPVTRKPVRASGAEVKANPRSRSA 303

Query: 310 KLRAGMR 316
            LRA ++
Sbjct: 304 TLRAVVK 310


>gi|329766778|ref|ZP_08258308.1| ribosomal RNA small subunit methyltransferase H [Gemella
           haemolysans M341]
 gi|328839289|gb|EGF88871.1| ribosomal RNA small subunit methyltransferase H [Gemella
           haemolysans M341]
          Length = 311

 Score =  391 bits (1006), Expect = e-107,   Method: Composition-based stats.
 Identities = 108/307 (35%), Positives = 166/307 (54%), Gaps = 8/307 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74
           +  H  VLL + +  LN     + +D T G  G+S    K      + A D+D  A+   
Sbjct: 1   MFKHYSVLLNEAVEGLNIIEDGIYVDCTLGGAGHSLEILKQLKNGKLYAFDQDNIALENA 60

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +  + +Y ++    ++ F  L++ + + GV   DGV++DLGVSS Q+D  +RGFS+    
Sbjct: 61  KNKLAEYSDKVVFIKSNFVNLKEKLAEHGVHEVDGVLYDLGVSSPQLDTPERGFSYNYDT 120

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM     ISA +VVN+ +  DL +I    GEE  + +IA  I K+R+  P +TT +
Sbjct: 121 KLDMRMDTDAKISAYEVVNEYSYHDLVKIFYRYGEENFSKQIARNIEKKREQKPIETTFE 180

Query: 191 LSSLIQKTVYFSKNN-RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I++++  +K     HPA R FQA+RI VNNE+      L  A   +K GG + V++
Sbjct: 181 LVEIIKESIPAAKRRTGGHPAKRVFQAIRIAVNNELSVFEDSLEQAIDIVKVGGRISVIT 240

Query: 250 FHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+ K+ F S +  K +     I      +  + IT+K + P+  ++  N RSRS
Sbjct: 241 FHSLEDRICKQIFNSYAKAKDIPKNLPIMPEESLSKLKVITRKPIYPSDIELEENNRSRS 300

Query: 309 AKLRAGM 315
           AKLR   
Sbjct: 301 AKLRVAE 307


>gi|217963812|ref|YP_002349490.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes HCC23]
 gi|290892188|ref|ZP_06555184.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL
           J2-071]
 gi|263456353|sp|B8DH88|RSMH_LISMH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|217333082|gb|ACK38876.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes HCC23]
 gi|290558311|gb|EFD91829.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL
           J2-071]
 gi|307571615|emb|CAR84794.1| S-adenosyl-methyltransferase [Listeria monocytogenes L99]
          Length = 312

 Score =  391 bits (1006), Expect = e-107,   Method: Composition-based stats.
 Identities = 105/311 (33%), Positives = 176/311 (56%), Gaps = 9/311 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H  VLL + + +L   P  + +DAT G  G+S           ++ A D+D  A+  
Sbjct: 1   MFKHETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +  + DY ++ +  +A F  +++ + ++G   VDG+++DLGVSS Q+D  +RGFS+ + 
Sbjct: 61  AKIKLADYSDKVTFIKANFRDMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQD 120

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM     ++A  VVN+ + +DL RI    GEEK + +IA  I +RR+  P +TT 
Sbjct: 121 AALDMRMDQEQELTAKTVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTG 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I+  +   ++    HP  R+FQA+RI VN+E+  +   L  A   LK GG + V+
Sbjct: 181 ELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLLKPGGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K+ F   + G  +     +  + +   F+  T+K +VP++E++  N R+R
Sbjct: 241 TFHSLEDRITKQLFQEATKGPDLPPGLPVIPDEYKPDFKLATRKPIVPSEEELEQNNRAR 300

Query: 308 SAKLRAGMRTV 318
           SAKLR   + +
Sbjct: 301 SAKLRVIEKII 311


>gi|15615138|ref|NP_243441.1| hypothetical protein BH2575 [Bacillus halodurans C-125]
 gi|20139210|sp|Q9K9S0|RSMH_BACHD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|10175196|dbj|BAB06294.1| BH2575 [Bacillus halodurans C-125]
          Length = 310

 Score =  391 bits (1006), Expect = e-107,   Method: Composition-based stats.
 Identities = 115/309 (37%), Positives = 183/309 (59%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73
           + +HV VL  + +  LN  P  + +D T G  G+S+   K    G ++ A D+D +A+S 
Sbjct: 1   MFEHVTVLKNESVIGLNIKPDGIYVDCTLGGAGHSQEIVKQLTGGGHLYAFDQDQYALSH 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +ET+  Y+  F+L ++ F  +++ + + GV   DGV+FDLGVSS Q+D  +RGFS+ + 
Sbjct: 61  AKETLSPYRGSFTLIESNFRYMREKLEELGVHHVDGVLFDLGVSSPQLDEDERGFSYHRD 120

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM+ S  +SA +VVNQ +  +L +I+   GEE+ A +IA  I + R+  P +TT 
Sbjct: 121 APLDMRMNRSQSLSAYEVVNQWDFIELMKIISRYGEERFAKQIARKIEQSREKKPIRTTG 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I++ +   ++    HPA R+FQA+RI VN+E+    + L +A       G + V+
Sbjct: 181 ELVDIIKEAIPAPARRTGGHPAKRTFQAIRIAVNDELGAFEEALEAAIDLTAPKGRICVI 240

Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K+ F   S G  +     +    + A  + ITKK +VPT E++  N R+R
Sbjct: 241 TFHSLEDRICKEMFREASKGPDVPPGLPVIPEEYKATLKLITKKPIVPTAEEIELNNRAR 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRIAEK 309


>gi|16801213|ref|NP_471481.1| S-adenosyl-methyltransferase MraW [Listeria innocua Clip11262]
 gi|20139025|sp|Q929X6|RSMH_LISIN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|16414661|emb|CAC97377.1| lin2147 [Listeria innocua Clip11262]
          Length = 312

 Score =  391 bits (1006), Expect = e-107,   Method: Composition-based stats.
 Identities = 103/311 (33%), Positives = 176/311 (56%), Gaps = 9/311 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H  VLL + + +L   P  + +DAT G  G+S           ++ A D+D  A+  
Sbjct: 1   MFKHETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEQGHLFAFDQDQTAIDN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +  + +Y ++ +  ++ F  +++ + ++G   VDG+++DLGVSS Q+D  +RGFS+ + 
Sbjct: 61  AKIKLAEYSDRVTFIKSNFRYMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQD 120

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM     ++A  VVN+ + +DL RI    GEEK + +IA  I +RR+  P +TT 
Sbjct: 121 AALDMRMDQEQELTAKKVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTG 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I+  +   ++    HP  R+FQA+RI VN+E+  +   L +A   LK GG + V+
Sbjct: 181 ELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLENALTLLKPGGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F   + G  +     +  + +   F+  T+K +VP++E++  N R+R
Sbjct: 241 TFHSLEDRITKYLFQEATKGPDLPPGLPVIPDEYKPDFKLATRKPIVPSEEELEQNNRAR 300

Query: 308 SAKLRAGMRTV 318
           SAKLR   + +
Sbjct: 301 SAKLRVIEKII 311


>gi|116492952|ref|YP_804687.1| S-adenosyl-methyltransferase MraW [Pediococcus pentosaceus ATCC
           25745]
 gi|122265584|sp|Q03EX7|RSMH_PEDPA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|116103102|gb|ABJ68245.1| SAM-dependent methyltransferase for cell envelope biogenesis
           [Pediococcus pentosaceus ATCC 25745]
          Length = 314

 Score =  391 bits (1006), Expect = e-107,   Method: Composition-based stats.
 Identities = 111/313 (35%), Positives = 179/313 (57%), Gaps = 13/313 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72
           T   H  VLLE+ +  L+     + +D T G GG+SR          ++ + D+D  A+ 
Sbjct: 2   TEFKHTTVLLEETVNGLDVKEDGIYVDCTLGGGGHSRLILSKLGENGHLYSFDQDQTAID 61

Query: 73  CGQETMRDY--KEQFSLFQATFSQLQD---YVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
             Q+ + +Y  K Q +  ++ F  L++   ++   GVDGV++DLGVSS Q D   RGFS+
Sbjct: 62  YNQKNLAEYVAKGQVTFVKSNFRNLKNELNHLGIDGVDGVLYDLGVSSPQFDDAGRGFSY 121

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           +   PLDMRM  +  ++A +VVN+ +  DL RI    GEEK + ++A  I   R+  P +
Sbjct: 122 RFDAPLDMRMDQTQKLNAREVVNEWSYNDLVRIFFRYGEEKYSKQVARKIESTREEKPIE 181

Query: 187 TTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           TT +L+ LI+  +  + +    HPA + FQA+RI VN+E+  L + L  A + L   G +
Sbjct: 182 TTGELADLIKSAIPAAARRTGGHPAKKIFQAIRIAVNDELGALEESLEQALQILNPAGRI 241

Query: 246 IVVSFHSLEDRLVKKFFASRS--GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            V++F SLEDRLVK+ F  ++  G + A   +IP +  P  ++ I +K ++P+++++  N
Sbjct: 242 SVITFQSLEDRLVKRMFKEQTEIGDLPAGLPIIPDDMKPK-YKLINRKPIIPSEDELEEN 300

Query: 304 RRSRSAKLRAGMR 316
           RRS SAKLR   +
Sbjct: 301 RRSHSAKLRIIEK 313


>gi|325684346|gb|EGD26515.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Lactobacillus delbrueckii subsp. lactis DSM 20072]
          Length = 314

 Score =  391 bits (1006), Expect = e-107,   Method: Composition-based stats.
 Identities = 105/310 (33%), Positives = 166/310 (53%), Gaps = 12/310 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76
            H  VLL + I  L P  G   +DATFG GG++R         N+I  D+D +A+   Q 
Sbjct: 4   KHTSVLLHETIDNLAPQSGGTYVDATFGGGGHARYLLSKLDKGNLIGFDQDQYAIDTAQS 63

Query: 77  TMRDY-----KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
               +     + +  L    FS L++ +      G+DG+ +DLGVSS Q+D  +RGFS++
Sbjct: 64  NFAAFLKEDSQPRLQLVHNNFSHLKEELAKLGISGIDGIYYDLGVSSPQLDQAERGFSYR 123

Query: 129 KSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
               LDMRM  S    A  +VNQ + K L  +L   G+EK + +IA  IV+RR+  P +T
Sbjct: 124 FDARLDMRMDQSQDFDAYQLVNQYDQKQLADVLYRYGDEKFSRQIARKIVERRRVKPIET 183

Query: 188 TQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T +L  +I++ +  + + +  HPA +SFQA+R+ VN+E++ L   L  A   L  GG + 
Sbjct: 184 TFELVEIIKEAIPAAARRSGGHPAKKSFQAIRVEVNHELDVLRASLEEAISLLNPGGRIS 243

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V++F S ED++VK+ F   S   +     +         + + +K +  ++E++A N RS
Sbjct: 244 VITFQSSEDKIVKQTFKKYSEVEIPRGMPVVPEGIKPTLRLVNRKPITASEEELAENNRS 303

Query: 307 RSAKLRAGMR 316
            SAKLR   +
Sbjct: 304 HSAKLRVAEK 313


>gi|239623438|ref|ZP_04666469.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239521469|gb|EEQ61335.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 315

 Score =  391 bits (1006), Expect = e-107,   Method: Composition-based stats.
 Identities = 100/312 (32%), Positives = 172/312 (55%), Gaps = 8/312 (2%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFA 70
           +      H  VLL + +  LN  PG + +D T G GG++   CK      +I +D+D  A
Sbjct: 1   MEEQAFVHKSVLLYETVGSLNIKPGGIYVDGTLGGGGHAYEVCKRLGSGRLIGIDQDADA 60

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSF 127
           +      +  +K++ ++ ++ +  ++  + + G   VDG+  DLGVSS Q+D   RGF++
Sbjct: 61  IEAAGRRLEHFKDKVTIVRSNYENIRTVLNELGLLKVDGIYLDLGVSSYQLDTASRGFTY 120

Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           ++  PLDMRM   +  +A+D+VN     +L RI+   GE+  A  IA  IV+ R   P +
Sbjct: 121 REDAPLDMRMDQRNTTTAADIVNTYTEMELYRIIRDYGEDNFAKNIAKHIVRARGEHPIE 180

Query: 187 TTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           TT +L+ +I+  +    +    HPA R+FQA+RI  N+E++ L Q + +  + L  GG L
Sbjct: 181 TTGELAEIIKAAIPARVRATGGHPAKRTFQAIRIECNHELDVLEQSIDTMIELLNPGGRL 240

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
            +++FHSLEDR+VK  F +     +      +      +  + +++K ++P++E++  N 
Sbjct: 241 SIITFHSLEDRIVKNRFRTNENPCICPHEFPVCVCGRKSKGKVVSRKPILPSKEELEENS 300

Query: 305 RSRSAKLRAGMR 316
           RS+SAKLR   R
Sbjct: 301 RSKSAKLRVFER 312


>gi|300854240|ref|YP_003779224.1| putative S-adenosyl-methyltransferase [Clostridium ljungdahlii DSM
           13528]
 gi|300434355|gb|ADK14122.1| predicted S-adenosyl-methyltransferase [Clostridium ljungdahlii DSM
           13528]
          Length = 309

 Score =  391 bits (1006), Expect = e-107,   Method: Composition-based stats.
 Identities = 106/307 (34%), Positives = 165/307 (53%), Gaps = 9/307 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            HVPVLL + I  LN     + +D T G GG+S    K       +I +D D  A++  +
Sbjct: 4   KHVPVLLNETINSLNIKEDGIYVDCTLGGGGHSFEILKRLSDKGRLIGIDEDTSAINATR 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E + ++K   +     F  + + + +     VDG++ DLGVSS Q+D  +RGFS+ K  P
Sbjct: 64  ERLNEFK-NITYVHNNFYYIDEILEELKIDKVDGILMDLGVSSYQLDESERGFSYMKDAP 122

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+  S +SA +V+N  + ++L  ++   GEE  + RIA  IV  R+ AP QTT  L
Sbjct: 123 LDMRMNRDSSLSAYEVINNYSEENLYNVIRDYGEENFSKRIAKFIVAEREKAPIQTTLQL 182

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             +I+  +        HPA R+FQA+RI VN E++ L + +  + K L  GG + +++FH
Sbjct: 183 VDIIRNAIPARFQKEGHPAKRTFQAIRIEVNGELKILNKAVEDSVKRLNTGGRISIITFH 242

Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR++K  F              +       + + I KK ++PT+E+   N RS+S+K
Sbjct: 243 SLEDRIIKTKFKKLENPCTCPPDFPLCVCGKKPIVKIINKKPIIPTKEEKEKNSRSKSSK 302

Query: 311 LRAGMRT 317
           LR   + 
Sbjct: 303 LRTAEKI 309


>gi|325662359|ref|ZP_08150968.1| ribosomal RNA small subunit methyltransferase H 2 [Lachnospiraceae
           bacterium 4_1_37FAA]
 gi|331086162|ref|ZP_08335244.1| ribosomal RNA small subunit methyltransferase H 2 [Lachnospiraceae
           bacterium 9_1_43BFAA]
 gi|325471361|gb|EGC74584.1| ribosomal RNA small subunit methyltransferase H 2 [Lachnospiraceae
           bacterium 4_1_37FAA]
 gi|330406321|gb|EGG85835.1| ribosomal RNA small subunit methyltransferase H 2 [Lachnospiraceae
           bacterium 9_1_43BFAA]
          Length = 316

 Score =  391 bits (1005), Expect = e-107,   Method: Composition-based stats.
 Identities = 106/307 (34%), Positives = 168/307 (54%), Gaps = 9/307 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            H  VLLE+ +  LN  P  + +D T G GG++   CK      + I +D+D  A+    
Sbjct: 4   KHKSVLLEETVNGLNIKPDGIYVDGTLGGGGHAEEVCKQLNDKGSFIGIDQDAAAIEAAS 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +  + E+ ++ ++ +  ++  + ++G   VDG++ DLGVSS Q+D  +RGFS++   P
Sbjct: 64  VRLAGFGERVTIIRSNYCDMKSRLRERGIDKVDGIILDLGVSSYQLDTAERGFSYRVDAP 123

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM      +A D+VN  +  +L RI+   GE+K A  IA  IV  R+ AP +TT  L
Sbjct: 124 LDMRMDRRQEKTARDIVNTYSEMELFRIIRDYGEDKFAKNIAKHIVMEREKAPIETTGQL 183

Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+  +    + N  HPA R+FQA+RI +N E+E L   L    + L   G + +++F
Sbjct: 184 CEIIRHAIPMKFQKNTGHPAKRTFQAIRIELNRELEVLRDTLDEMIELLNDNGRICIITF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  F           H  +    + +  + ITKK ++P ++++  N RS+SA
Sbjct: 244 HSLEDRIVKGIFKKNENPCTCPSHFPVCVCGNVSKGKVITKKPILPGEQELEENSRSKSA 303

Query: 310 KLRAGMR 316
           KLR   R
Sbjct: 304 KLRIFER 310


>gi|315924810|ref|ZP_07921027.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315621709|gb|EFV01673.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 314

 Score =  391 bits (1005), Expect = e-107,   Method: Composition-based stats.
 Identities = 117/308 (37%), Positives = 174/308 (56%), Gaps = 8/308 (2%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCG 74
           G H+ VL ++ IA L    G + +D T G GG+S + C+   +   +I +D+D +A+S  
Sbjct: 7   GKHITVLRDEAIAGLGIVRGGIYVDCTLGGGGHSEAICRALGHQGTLIGIDQDQYALSRA 66

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +  +R  +      +  F  L+  + + G+   DG +FDLGVSS Q D  +RGFS+   G
Sbjct: 67  ETRLRSQRCHKIFVRNNFVDLETVLDNAGIEKADGFLFDLGVSSFQFDQAERGFSYHHDG 126

Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  S  ++A  VVN  + +DL RIL   GEEK + R+A AIVK R  AP   T  
Sbjct: 127 PLDMRMDRSRPLTAERVVNTYSQEDLKRILWGYGEEKMSGRVAAAIVKARAQAPITRTGQ 186

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ +I+         + HPA ++FQALRI VN E+  L   L++A   L  GG + V++F
Sbjct: 187 LAEIIKAAYPEKLKRKGHPAKKTFQALRIEVNGELRILNDALKAAIDRLNPGGRICVITF 246

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLED+LVK+ F  ++   +    +           + IT+K +VP++ ++A NRR+RSA
Sbjct: 247 HSLEDQLVKRLFTEQADPCICPPELPQCVCGRVPTIKKITRKPIVPSETELAANRRARSA 306

Query: 310 KLRAGMRT 317
           KLR   R 
Sbjct: 307 KLRIAERI 314


>gi|184155045|ref|YP_001843385.1| cell division protein [Lactobacillus fermentum IFO 3956]
 gi|227514829|ref|ZP_03944878.1| S-adenosyl-methyltransferase [Lactobacillus fermentum ATCC 14931]
 gi|260663589|ref|ZP_05864478.1| methylase MraW [Lactobacillus fermentum 28-3-CHN]
 gi|263458139|sp|B2GB73|RSMH_LACF3 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|183226389|dbj|BAG26905.1| cell division protein [Lactobacillus fermentum IFO 3956]
 gi|227086819|gb|EEI22131.1| S-adenosyl-methyltransferase [Lactobacillus fermentum ATCC 14931]
 gi|260551815|gb|EEX24930.1| methylase MraW [Lactobacillus fermentum 28-3-CHN]
          Length = 314

 Score =  391 bits (1005), Expect = e-107,   Method: Composition-based stats.
 Identities = 124/309 (40%), Positives = 182/309 (58%), Gaps = 12/309 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76
           +HV VLL + +A L   P  V +DAT G GG+S    K     ++ + D+D  A+   Q 
Sbjct: 5   NHVTVLLHEAVAGLAIQPAGVYVDATLGGGGHSGEILKQLTSGHLYSFDQDETAIHYNQA 64

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +     + + +L Q  F  L+  + D+GV   DG+V+DLGVSS Q D   RGFS+Q   
Sbjct: 65  NLGPAIEEGKLTLMQTNFRNLKQALADQGVTAIDGIVYDLGVSSPQFDDAKRGFSYQHDA 124

Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+    +SA  VVN+ + ++L RIL   GEEK A +IA AI + RQ  P QTT +
Sbjct: 125 PLDMRMNQDQPLSAYQVVNEWSYQELVRILYRYGEEKFAKQIARAIERARQKQPIQTTME 184

Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L++++++ +  + + +  HPA +SFQA+RI VN+E+  L   L  A   LK GG + V++
Sbjct: 185 LANIVKEAIPAAARRHGGHPAKKSFQAIRIAVNDELGALEDSLEQALALLKVGGRISVIT 244

Query: 250 FHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           F SLEDRLVK  F   +    +     +IP++A P  F+ I KK V+PT++++  N R+ 
Sbjct: 245 FQSLEDRLVKTMFKEATSLPDLPPGLPVIPADAQP-DFKLINKKPVLPTEDELKVNHRAH 303

Query: 308 SAKLRAGMR 316
           SAKLR   R
Sbjct: 304 SAKLRVIER 312


>gi|302380517|ref|ZP_07268982.1| S-adenosyl-methyltransferase MraW [Finegoldia magna ACS-171-V-Col3]
 gi|303234081|ref|ZP_07320730.1| S-adenosyl-methyltransferase MraW [Finegoldia magna BVS033A4]
 gi|302311460|gb|EFK93476.1| S-adenosyl-methyltransferase MraW [Finegoldia magna ACS-171-V-Col3]
 gi|302495006|gb|EFL54763.1| S-adenosyl-methyltransferase MraW [Finegoldia magna BVS033A4]
          Length = 312

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 101/309 (32%), Positives = 165/309 (53%), Gaps = 9/309 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76
            HVP+LL + I  LN   GK+ +D T G  G+SR   K      +I  D+D  A+   ++
Sbjct: 4   KHVPILLNECIENLNIRDGKIYVDCTVGGAGHSREIAKRIGNGKLICFDQDEDALKVAKQ 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + ++ ++    +  F  +++ + + G   VDG++ D+GVSS QID   RGFS+     L
Sbjct: 64  RLEEFGDKIIFIKDNFKNIKNDLHNLGIEKVDGILMDIGVSSYQIDEDSRGFSYMHDADL 123

Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  S   SA D+VN  + +DL  ++    +EK A RIA  I   R++ P  TT +L 
Sbjct: 124 DMRMDQSNPISAKDIVNTYSKEDLENVIFKYSDEKWAKRIAEFICNARETKPINTTFELV 183

Query: 193 SLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
            +I+K +        + H A ++FQA+RI VN E++ L Q +  +   L   G + +++F
Sbjct: 184 EVIEKAIPKKVRVNQKGHSAKKTFQAIRIEVNKELDVLEQAVGDSIDLLNPEGRICIITF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLED++ K  F  R    +      +    H    + IT+K + P+++++  N R+RSA
Sbjct: 244 HSLEDKICKDIFRQRQKGCICPPEIPVCVCNHKPEIKIITRKPIEPSKDELMQNSRARSA 303

Query: 310 KLRAGMRTV 318
           KLR   + +
Sbjct: 304 KLRVAEKII 312


>gi|46908277|ref|YP_014666.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes serotype
           4b str. F2365]
 gi|254826203|ref|ZP_05231204.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL
           J1-194]
 gi|255520499|ref|ZP_05387736.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL
           J1-175]
 gi|51316263|sp|Q71XX2|RSMH_LISMF RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|46881548|gb|AAT04843.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes serotype
           4b str. F2365]
 gi|293595444|gb|EFG03205.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL
           J1-194]
          Length = 312

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 105/311 (33%), Positives = 176/311 (56%), Gaps = 9/311 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H  VLL + + +L   P  + +DAT G  G+S           ++ A D+D  A+  
Sbjct: 1   MFKHETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +  + DY ++ +  +A F  +++ + ++G   VDG+++DLGVSS Q+D  +RGFS+ + 
Sbjct: 61  AKIKLADYSDKVTFIKANFRDMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQD 120

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM     ++A  VVN+ + +DL RI    GEEK + +IA  I +RR+  P +TT 
Sbjct: 121 AALDMRMDQEQELTAKIVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTG 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I+  +   ++    HP  R+FQA+RI VN+E+  +   L  A   LK GG + V+
Sbjct: 181 ELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLLKPGGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K+ F   + G  +     +  + +   F+  T+K +VP++E++  N R+R
Sbjct: 241 TFHSLEDRITKQLFQEATKGPDLPPGLPVIPDEYKPDFKLATRKPIVPSEEELEQNNRAR 300

Query: 308 SAKLRAGMRTV 318
           SAKLR   + +
Sbjct: 301 SAKLRVIEKII 311


>gi|304439975|ref|ZP_07399868.1| S-adenosyl-methyltransferase MraW [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304371467|gb|EFM25080.1| S-adenosyl-methyltransferase MraW [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 314

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 109/310 (35%), Positives = 167/310 (53%), Gaps = 9/310 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
           T  +H+PVL  + I  LN     + +D T G  G+S    K       ++ +D+D FA+ 
Sbjct: 2   TNFEHIPVLFNETIEGLNIRENHIYMDCTIGGAGHSSEILKRLNGTGLLVGIDQDEFALY 61

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK 129
             ++ +R+  + F LF   F   ++ +   G   VDG++ DLGVSS Q D   RGFS+  
Sbjct: 62  TSEKRLREIGDNFKLFNNNFELFRENLDSLGISKVDGILLDLGVSSHQFDEASRGFSYNY 121

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM+ S  I+A D+VN  + + L +I    GEEK + R+A  IVK R S   +TT
Sbjct: 122 DAPLDMRMNKSTRITAKDIVNTYSKEALMKIFYEYGEEKWSKRVAEFIVKARNSKTIETT 181

Query: 189 QDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L  +I+  +   +++   HPA R FQALRI  N+E+  L + L    ++L  GG + V
Sbjct: 182 FELVEIIKAAIPKGARSGGPHPAKRIFQALRIETNDELGVLRRSLGDMIESLNPGGRICV 241

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           +SFHSLEDR+VK  F       +      + +       + IT+K +  ++E++A N R+
Sbjct: 242 ISFHSLEDRIVKDTFKYYYLDCICPPEVPVCTCNKKREIEIITRKPITASKEELAINNRA 301

Query: 307 RSAKLRAGMR 316
            SAKLR   +
Sbjct: 302 HSAKLRIAEK 311


>gi|163761063|ref|ZP_02168140.1| S-adenosyl-methyltransferase protein [Hoeflea phototrophica DFL-43]
 gi|162281614|gb|EDQ31908.1| S-adenosyl-methyltransferase protein [Hoeflea phototrophica DFL-43]
          Length = 338

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 164/322 (50%), Positives = 215/322 (66%), Gaps = 2/322 (0%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+PVLL +V+A L  AP ++I+D TFGAGGY+ +  + G++VI  DRDP A++ G E   
Sbjct: 19  HIPVLLREVLAALEAAPSQLIVDGTFGAGGYTAAILEAGASVIGFDRDPEAIANGAEMAA 78

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
               +  L  A FS L ++V +  +DG+V D+GVSSMQID  +RGFSF + GPLDMRM+ 
Sbjct: 79  ASGGRLKLIHAQFSHLLEHVEEASLDGLVLDIGVSSMQIDEAERGFSFMRDGPLDMRMAQ 138

Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199
           +GISA+DVVN+A   DLTRI GILGEE+ A RIA AI   R   PF TT+ L+ LI+K  
Sbjct: 139 AGISAADVVNRAKASDLTRIFGILGEERHAGRIARAIEAERAKHPFSTTRQLAGLIEKVS 198

Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259
                ++IHPATR FQALR +VN+E+ ELA  L +AEKALK GG L+VV+FHSLEDR+VK
Sbjct: 199 PRRPQDKIHPATRVFQALRTYVNDELGELATALFAAEKALKPGGRLVVVTFHSLEDRIVK 258

Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319
           +FF  RSGK    RH+       A F +I K+ VV  +E+   N R+RSAKLRAG+R+  
Sbjct: 259 RFFQDRSGKASGSRHLPAVQERKATFTAIGKQPVVAGEEECEANPRARSAKLRAGLRSDA 318

Query: 320 RSIEDDSFVHLPRLPTLSQFRG 341
            +    S + LP +P L    G
Sbjct: 319 PAGPTGSDI-LP-VPNLVALGG 338


>gi|315639624|ref|ZP_07894764.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Enterococcus italicus DSM 15952]
 gi|315484585|gb|EFU75041.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Enterococcus italicus DSM 15952]
          Length = 318

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 102/311 (32%), Positives = 167/311 (53%), Gaps = 11/311 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H  VL ++ +  L   P  + +D T G  G+S           ++ A D+D  A+   ++
Sbjct: 5   HYTVLKKETVEGLAIKPDGIYVDCTLGGAGHSEYLLSQLGPDGHLYAFDQDQKALDFAKQ 64

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            ++ +  K Q +  ++ F +L+  + +     VDG+++DLGVSS Q+D  +RGFS+ +  
Sbjct: 65  RLQSFVDKGQVTFIKSNFRELKSKLAELDVMKVDGILYDLGVSSPQLDEAERGFSYHQDA 124

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  S   SA D+VN  +  +L +I    GEEK + +IA  I + R + P +TT +
Sbjct: 125 PLDMRMDQSASFSAHDLVNTYSYNELVKIFFRYGEEKFSKQIAREIERVRANQPIETTSE 184

Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I+  +   ++    HPA R FQA+RI VN+E+  + + L  A + L   G + V++
Sbjct: 185 LVEIIKTAIPAPARRKGGHPAKRIFQAIRIAVNDELGAVEESLEQAIELLAIHGRISVIT 244

Query: 250 FHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDRLVK  F   S  K +     +  + +  +   I +K +  ++ ++  N RSRS
Sbjct: 245 FHSLEDRLVKNMFKEYSQVKELPPGLPVIPDEYQPMLTVINRKPITASELELEENNRSRS 304

Query: 309 AKLRAGMRTVE 319
           AKLR   +  E
Sbjct: 305 AKLRIVEKVKE 315


>gi|166031196|ref|ZP_02234025.1| hypothetical protein DORFOR_00882 [Dorea formicigenerans ATCC
           27755]
 gi|166029043|gb|EDR47800.1| hypothetical protein DORFOR_00882 [Dorea formicigenerans ATCC
           27755]
          Length = 311

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 105/306 (34%), Positives = 168/306 (54%), Gaps = 9/306 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
            H  VLL + I  LN  P  + +D T G GG++   C+       ++ +D+D  A+    
Sbjct: 4   KHKSVLLNETIDGLNIKPDGIYVDGTLGGGGHAYEVCRRLGEKGSIVGIDQDAAAIEAAS 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             ++D+ E+ ++ ++ +  ++  + + G   VDG+V DLGVSS Q+D  +RGFS+++  P
Sbjct: 64  ARLKDFGEKVTIVRSNYCDMKSKLHELGIDKVDGIVLDLGVSSYQLDTAERGFSYREDAP 123

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM     ++A D+VN     DL R++   GE+K A  IA  IV+ R   P +TT +L
Sbjct: 124 LDMRMDTRQKMTARDIVNDYTEADLYRVIRDYGEDKFAKNIAKHIVQARAVKPVETTAEL 183

Query: 192 SSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           S +I+ ++      +  HPA R+FQA+RI +N E++ L   L      L  GG L +++F
Sbjct: 184 SEIIRASIPMKFQKKSGHPAKRTFQAIRIELNRELDVLRDSLDDMIDLLNPGGRLCIITF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  F              +      +    ITKK ++P++E++ +N RS+SA
Sbjct: 244 HSLEDRIVKSAFRKNENPCTCPPDFPVCVCGKKSKGSIITKKPILPSEEELEYNSRSKSA 303

Query: 310 KLRAGM 315
           KLR   
Sbjct: 304 KLRIFE 309


>gi|263460426|sp|A5G8K8|RSMH_GEOUR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 312

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 124/308 (40%), Positives = 179/308 (58%), Gaps = 9/308 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
            H+ V+  +VI  L P  G + +D T G GG++R   +  +    +I  DRD  A++   
Sbjct: 5   HHISVMAAEVIQYLAPRAGGIYVDGTLGGGGHARQILEASAPDGLLIGFDRDREAIAIAA 64

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQKSGP 132
           E +  Y E+  L Q  F+ L + + + G+D +   + D+GVSS Q+D   RGFSFQ   P
Sbjct: 65  ERLAPYGERVRLVQRNFACLAETLDEMGIDAIDGFLLDVGVSSHQLDTAARGFSFQHDAP 124

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM   SG SASD+VN  +  DL RI+   GEE+ A RIA  IVKRR+ +P +TT  L
Sbjct: 125 LDMRMDVSSGQSASDLVNTLSEADLARIIWDYGEERWAKRIAAFIVKRREESPIETTMQL 184

Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+  V   + + R+HPATR+FQALRI VN+E+  L + L +  + LK GG  +V+SF
Sbjct: 185 VDVIKGAVPRGAWDVRLHPATRTFQALRIAVNDELASLEKALAAGVRFLKKGGRGVVISF 244

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  F S +      + +         + + IT K V+  + +V+ N RSRSA
Sbjct: 245 HSLEDRIVKTSFRSFAQGCTCPKSIPRCVCGKLPLVKVITGKPVMANEAEVSMNPRSRSA 304

Query: 310 KLRAGMRT 317
           +LRA  + 
Sbjct: 305 RLRAAEKI 312


>gi|295399706|ref|ZP_06809687.1| S-adenosyl-methyltransferase MraW [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312111775|ref|YP_003990091.1| S-adenosyl-methyltransferase MraW [Geobacillus sp. Y4.1MC1]
 gi|294978109|gb|EFG53706.1| S-adenosyl-methyltransferase MraW [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311216876|gb|ADP75480.1| S-adenosyl-methyltransferase MraW [Geobacillus sp. Y4.1MC1]
          Length = 310

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 105/309 (33%), Positives = 171/309 (55%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H  VLL++ +  L+  P    +D T G GG+S            + A D+D  A+  
Sbjct: 1   MFQHTTVLLKEAVDGLHINPDGTYVDCTLGGGGHSEYLLSQLSEKGRLFAFDQDDMAIEY 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130
            ++ +  Y++Q +  +  F  L + +  +GV   DG++FDLGVSS Q+D  +RGFS+   
Sbjct: 61  AKKRLARYEKQVTFIRRNFRFLAEELAARGVHKVDGILFDLGVSSPQLDTPERGFSYHHD 120

Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM+    ++A D+VN    + L  I    GEEK + ++A  I + R+    +TT 
Sbjct: 121 APLDMRMNREQPLTAYDIVNHWPYEKLVHIFFHYGEEKFSKQVARKIEEVRKEKRIETTG 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L ++I++ +   ++ +  HPA R FQA+RI VN+E++   + +  A   LK+GG + V+
Sbjct: 181 ELVNIIKEAIPAPARRSGGHPAKRIFQAIRIAVNDELQAFQEAITQAIDVLKSGGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F   S    +     +    +    + ITKK +VP++E+VA N R+R
Sbjct: 241 TFHSLEDRICKATFKKASQSPQLPPGLPLIPEQYRPTLKMITKKPIVPSEEEVAHNHRAR 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRIAEK 309


>gi|328957120|ref|YP_004374506.1| S-adenosyl-methyltransferase MraW [Carnobacterium sp. 17-4]
 gi|328673444|gb|AEB29490.1| S-adenosyl-methyltransferase MraW [Carnobacterium sp. 17-4]
          Length = 318

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 111/312 (35%), Positives = 174/312 (55%), Gaps = 11/312 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
           T  +H  VLL + +  L+ +P  + +D T G  G+S           ++ A D+D  A+ 
Sbjct: 2   TAFNHETVLLRETVDGLSLSPEGIYVDCTLGGAGHSEYLLSQLDENGHLFAFDQDERAIE 61

Query: 73  CGQETMRDYKEQ--FSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSF 127
             +  + +Y E+   +  +A F  +++ + ++G   VDG+++DLGVSS Q+D  +RGFS+
Sbjct: 62  NAKVRLAEYVEKGMVTFIKANFRNIKEELTERGINEVDGILYDLGVSSPQLDEAERGFSY 121

Query: 128 QKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
            +  PLDMRM     ++A DVVN+ +  DL RI    GEEK + +IA  I   R+  P +
Sbjct: 122 HQDAPLDMRMDTDAPLTAKDVVNEWSYHDLIRIFYRYGEEKFSKQIARKIEAAREIKPIE 181

Query: 187 TTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           TT +L  LI+  +   ++    HPA R FQA+RI VN+E+  +   L  A + L  GG +
Sbjct: 182 TTSELVELIKSGIPAPARRKGGHPAKRVFQAIRIAVNDELSSVEDSLEQAIELLAIGGRI 241

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
            V+SFHSLEDR+VK  F   S      R   +  +      + IT+K ++P++E++A N 
Sbjct: 242 SVISFHSLEDRIVKTIFKDHSKGPELPRGLPVIPDGFLPELKLITRKPILPSEEELAVNN 301

Query: 305 RSRSAKLRAGMR 316
           RSRSAKLR   +
Sbjct: 302 RSRSAKLRIAEK 313


>gi|104773820|ref|YP_618800.1| S-adenosyl-methyltransferase MraW [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|122983974|sp|Q1GAU0|RSMH_LACDA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263460423|sp|Q04B77|RSMH_LACDB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|103422901|emb|CAI97563.1| S-adenosyl-methyltransferase MraW [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|325125484|gb|ADY84814.1| S-adenosyl-methyltransferase mraW [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 314

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 106/310 (34%), Positives = 167/310 (53%), Gaps = 12/310 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76
            H  VLL + I  L P  G   +DATFG GG++R   +     N+I  D+D +A+   Q 
Sbjct: 4   KHTSVLLHETIDNLAPQSGGTYVDATFGGGGHARYLLRKLDKGNLIGFDQDQYAIDTAQS 63

Query: 77  TMRDY-----KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
               +     + +  L    FS L++ +      G+DG+ +DLGVSS Q+D  +RGFS++
Sbjct: 64  NFAAFLKEDSQPRLQLVHNNFSHLKEELAKLGISGIDGIYYDLGVSSPQLDQAERGFSYR 123

Query: 129 KSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
               LDMRM  S    A  +VNQ + K L  +L   G+EK + +IA  IV+RR+  P +T
Sbjct: 124 FDARLDMRMDQSQDFDAYQLVNQYDQKQLADVLYRYGDEKFSRQIARKIVERRRGKPIET 183

Query: 188 TQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T +L  +I++ +  + +    HPA +SFQA+R+ VN+E++ L   L  A   L  GG + 
Sbjct: 184 TFELVEIIKEAIPAAARRRGGHPAKKSFQAIRVEVNHELDVLRASLEEAISLLNPGGRIS 243

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V++F SLED++VK+ F   S   +     +         + + +K +  ++E++A N RS
Sbjct: 244 VITFQSLEDKIVKQTFKKYSEVEIPRGMPVVPEGIKPTLRLVNRKSITASEEELAENNRS 303

Query: 307 RSAKLRAGMR 316
            SAKLR   +
Sbjct: 304 HSAKLRVAEK 313


>gi|138894646|ref|YP_001125099.1| S-adenosyl-methyltransferase MraW [Geobacillus thermodenitrificans
           NG80-2]
 gi|196247745|ref|ZP_03146447.1| S-adenosyl-methyltransferase MraW [Geobacillus sp. G11MC16]
 gi|263455979|sp|A4IM00|RSMH_GEOTN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|134266159|gb|ABO66354.1| S-adenosyl-methyltransferase MraW [Geobacillus thermodenitrificans
           NG80-2]
 gi|196212529|gb|EDY07286.1| S-adenosyl-methyltransferase MraW [Geobacillus sp. G11MC16]
          Length = 310

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 114/309 (36%), Positives = 172/309 (55%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H  VLL++ +  LN  P  V +D T G GG+S            + A D+D  A+  
Sbjct: 1   MFQHTTVLLKEAVDGLNVRPDGVYVDCTLGGGGHSEYLLSRLSKRGKLFAFDQDETAILH 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
             E +  Y+EQ       F  LQ+ +   G   VDG++FDLGVSS Q+D  +RGFS+Q  
Sbjct: 61  ASERLARYREQVQFINRNFRFLQEELSALGIHAVDGILFDLGVSSPQLDEPERGFSYQHD 120

Query: 131 GPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM     ++A+++VN+   ++L RI    GEEK + ++A  I + R+  P +TT 
Sbjct: 121 APLDMRMDRKQRLTAAEIVNRWPYEELVRIFFRYGEEKFSKQVARKIEEVRRKRPIETTG 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I+  +   ++ +  HPA R FQALRI VN+E+E   + L  A + L  GG + V+
Sbjct: 181 ELVEVIKAAIPAPARRSGGHPAKRIFQALRIAVNDELEAFREALEQAIELLAPGGRVSVI 240

Query: 249 SFHSLEDRLVKKFFASRSGK-VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K+ F   S    +     +  + +  V + ITKK VVP+ E++  N R+R
Sbjct: 241 TFHSLEDRICKETFKKASESPPLPPGLPVLPDDYRPVLKIITKKPVVPSAEELERNNRAR 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRIAEK 309


>gi|116873471|ref|YP_850252.1| S-adenosyl-methyltransferase MraW [Listeria welshimeri serovar 6b
           str. SLCC5334]
 gi|123461323|sp|A0AKE1|RSMH_LISW6 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|116742349|emb|CAK21473.1| S-adenosyl-methyltransferase [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 312

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 105/311 (33%), Positives = 175/311 (56%), Gaps = 9/311 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H  VLL + + +L   P  + +DAT G  G+S           ++ A D+D  A+  
Sbjct: 1   MFKHETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEQGHLFAFDQDQTAIDN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +  + DY ++ +  +A F  +++ + ++G   VDG+++DLGVSS Q+D  +RGFS+ + 
Sbjct: 61  AKMKLADYSDKVTFIKANFRYMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQD 120

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM     ++A  VVN+ + +DL RI    GEEK + +IA  I +RR+  P +TT 
Sbjct: 121 AALDMRMDQEQELTAKIVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTG 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I+  +   ++    HP  R+FQA+RI VN+E+  +   L  A   LK GG + V+
Sbjct: 181 ELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLLKPGGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F   + G  +     +  + +   F+  T+K +VP++E++  N R+R
Sbjct: 241 TFHSLEDRITKHLFQEATKGPELPPGLPVIPDEYKPDFKLATRKPIVPSEEELEQNNRAR 300

Query: 308 SAKLRAGMRTV 318
           SAKLR   + +
Sbjct: 301 SAKLRVIEKII 311


>gi|257413358|ref|ZP_04742795.2| S-adenosyl-methyltransferase MraW [Roseburia intestinalis L1-82]
 gi|257203798|gb|EEV02083.1| S-adenosyl-methyltransferase MraW [Roseburia intestinalis L1-82]
          Length = 315

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 105/308 (34%), Positives = 168/308 (54%), Gaps = 10/308 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H  VLL + I  LN  P  + +D T G GG+S    K       +I +D+D  A+    
Sbjct: 7   HHYSVLLNETIENLNIRPDGIYVDGTLGGGGHSYQILKRLGENGRLIGIDQDADAIQAAG 66

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK-SG 131
           E + ++  + +L ++ ++ +++ +      GVDG+V DLGVSS Q+D  +RGF++++   
Sbjct: 67  ERLAEFGNKATLIRSNYANMKEELHAIGVNGVDGIVLDLGVSSFQLDTPERGFTYREPDA 126

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM      +A D+VN  +  DL RI+   GE+K A  IA  IVK RQ    +T  +
Sbjct: 127 PLDMRMDDRQSQTAKDIVNGYSEMDLYRIIRDYGEDKFAKNIAKHIVKERQKKTIETAGE 186

Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I+  +    +    HPA R+FQA+RI +N+E+E L+  L      L  GG + +++
Sbjct: 187 LTDIIRAAIPMKVQVTGGHPAKRTFQAIRIELNHELEVLSDHLDEMIDLLNPGGRICIIT 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK  F              +      +  + IT+K ++P+++++  N RS+S
Sbjct: 247 FHSLEDRIVKSNFKRNENPCTCPSDFPVCVCGKVSKGKVITRKPILPSEKELEENSRSKS 306

Query: 309 AKLRAGMR 316
           AKLR   R
Sbjct: 307 AKLRVFER 314


>gi|47093593|ref|ZP_00231351.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes str. 4b
           H7858]
 gi|47018017|gb|EAL08792.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes str. 4b
           H7858]
 gi|328466075|gb|EGF37248.1| 16S rRNA m(4)C1402 methyltranserfase [Listeria monocytogenes 1816]
          Length = 312

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 105/311 (33%), Positives = 176/311 (56%), Gaps = 9/311 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H  VLL + + +L   P  + +DAT G  G+S           ++ A D+D  A++ 
Sbjct: 1   MFKHETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAINN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +  + DY ++ +  +A F  +++ + ++G   VDG+++DLGVSS Q+D  +RGFS+ + 
Sbjct: 61  AKIKLADYSDKVTFIKANFRDMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQD 120

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM     ++A  VVN+ + +DL RI    GEEK + +IA  I +RR+  P +TT 
Sbjct: 121 AALDMRMDQEQELTAKIVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTG 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I+  +   ++    HP  R+FQA+RI VN+E+  +   L  A   LK GG + V+
Sbjct: 181 ELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLLKPGGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F   + G  +     +  + +   F+  T+K +VP++E++  N R+R
Sbjct: 241 TFHSLEDRITKHLFQEATKGPDLPPGLPVIPDEYKPDFKLATRKPIVPSEEELEQNNRAR 300

Query: 308 SAKLRAGMRTV 318
           SAKLR   + +
Sbjct: 301 SAKLRVIEKII 311


>gi|226224647|ref|YP_002758754.1| hypothetical protein Lm4b_02062 [Listeria monocytogenes Clip81459]
 gi|254854022|ref|ZP_05243370.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL
           R2-503]
 gi|254933469|ref|ZP_05266828.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes HPB2262]
 gi|300765476|ref|ZP_07075457.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL
           N1-017]
 gi|263456339|sp|C1KWZ4|RSMH_LISMC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|225877109|emb|CAS05821.1| Hypothetical protein of unknown function [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|258607414|gb|EEW20022.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL
           R2-503]
 gi|293585031|gb|EFF97063.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes HPB2262]
 gi|300513787|gb|EFK40853.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL
           N1-017]
 gi|332312491|gb|EGJ25586.1| Ribosomal RNA small subunit methyltransferase H [Listeria
           monocytogenes str. Scott A]
          Length = 312

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 105/311 (33%), Positives = 175/311 (56%), Gaps = 9/311 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H  VLL + + +L   P  + +DAT G  G+S           ++ A D+D  A+  
Sbjct: 1   MFKHETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +  + DY ++ +  +A F  +++ + ++G   VDG+++DLGVSS Q+D  +RGFS+ + 
Sbjct: 61  AKIKLADYSDKVTFIKANFRDMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQD 120

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM     ++A  VVN+ + +DL RI    GEEK + +IA  I +RR+  P +TT 
Sbjct: 121 AALDMRMDQEQELTAKIVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTG 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I+  +   ++    HP  R+FQA+RI VN+E+  +   L  A   LK GG + V+
Sbjct: 181 ELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLLKPGGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F   + G  +     +  + +   F+  T+K +VP++E++  N R+R
Sbjct: 241 TFHSLEDRITKHLFQEATKGPDLPPGLPVIPDEYKPDFKLATRKPIVPSEEELEQNNRAR 300

Query: 308 SAKLRAGMRTV 318
           SAKLR   + +
Sbjct: 301 SAKLRVIEKII 311


>gi|320547904|ref|ZP_08042187.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus equinus ATCC 9812]
 gi|320447444|gb|EFW88204.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus equinus ATCC 9812]
          Length = 319

 Score =  389 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 109/323 (33%), Positives = 170/323 (52%), Gaps = 15/323 (4%)

Query: 6   CKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVI 62
            K M+   H     H+ VLL + + +L+  P  + +DAT G  G+S           ++ 
Sbjct: 1   MKGMTKDFH-----HITVLLHETVDMLDIKPDGIYVDATLGGAGHSEYLLSKLGPNGHLY 55

Query: 63  ALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQ 117
           A D+D  A+   Q  ++DY  K Q +  +  F  L   +   GV   DG+++DLGVSS Q
Sbjct: 56  AFDQDQTAIDNAQIRLKDYIEKGQVTFIKDNFRNLASNLAMHGVTEIDGILYDLGVSSPQ 115

Query: 118 IDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
           +D  +RGFS++K  PLDMRM+    ++A DVVN  +  DL RI    GE+K + +IA  I
Sbjct: 116 LDERERGFSYKKDAPLDMRMNREQDLTAYDVVNTYDYHDLVRIFYKYGEDKFSKQIARKI 175

Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
            + RQ  P +TT +L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A
Sbjct: 176 EQARQVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQA 235

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295
              L   G + V++FHSLEDRL K+ F   S   +        +        + +K ++P
Sbjct: 236 IDLLVVDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDMQPKLALVNRKPILP 295

Query: 296 TQEDVAFNRRSRSAKLRAGMRTV 318
           +QE++  N RS SAKLR   +  
Sbjct: 296 SQEELEANNRSHSAKLRVARKVR 318


>gi|325977602|ref|YP_004287318.1| S-adenosyl-methyltransferase MraW [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
 gi|325177530|emb|CBZ47574.1| S-adenosyl-methyltransferase MraW [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
          Length = 324

 Score =  389 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 113/324 (34%), Positives = 175/324 (54%), Gaps = 17/324 (5%)

Query: 6   CKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVI 62
            K M++  H     H+ VLL + + +L+  P  V +DAT G  G+S           ++ 
Sbjct: 6   MKGMTTDFH-----HITVLLHETVDMLDIKPDGVYVDATLGGAGHSEYLLSKLGPTGHLY 60

Query: 63  ALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQ 117
           A D+D  A+   Q  ++DY  K Q +  +  F  L   +   GV   DG+++DLGVSS Q
Sbjct: 61  AFDQDQTAIDNAQIRLKDYIEKGQVTFIKDNFRNLASNLASHGVTEIDGILYDLGVSSPQ 120

Query: 118 IDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
           +D  +RGFS++K  PLDMRM+    +SA DVVN  +  DL RI    GE+K + +IA  I
Sbjct: 121 LDERERGFSYKKDAPLDMRMNRDQDLSAYDVVNTYDYHDLVRIFFKYGEDKFSKQIARKI 180

Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
            + R+  P +TT +L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A
Sbjct: 181 EQARKVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQA 240

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVV 294
            + L   G + V++FHSLEDRL K+ F   S   V      IP +  P     + +K ++
Sbjct: 241 IELLAVDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPEDMQPK-LALVNRKPIL 299

Query: 295 PTQEDVAFNRRSRSAKLRAGMRTV 318
           P++E++  N RS SAKLR   +  
Sbjct: 300 PSEEELEVNNRSHSAKLRVARKVR 323


>gi|313622989|gb|EFR93285.1| S-adenosyl-methyltransferase MraW [Listeria innocua FSL J1-023]
          Length = 312

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 103/311 (33%), Positives = 176/311 (56%), Gaps = 9/311 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H  VLL + + +L   P  + +DAT G  G+S           ++ A D+D  A+  
Sbjct: 1   MFKHETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +  + +Y ++ +  ++ F  +++ + ++G   VDG+++DLGVSS Q+D  +RGFS+ + 
Sbjct: 61  AKIKLAEYSDKVTFIKSNFRYMKETLNERGIEAVDGILYDLGVSSPQLDERERGFSYHQD 120

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM     ++A  VVN+ + +DL RI    GEEK + +IA  I +RR+  P +TT 
Sbjct: 121 AALDMRMDQEQELTAKKVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTG 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I+  +   ++    HP  R+FQA+RI VN+E+  +   L +A   LK GG + V+
Sbjct: 181 ELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLENALTLLKPGGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F   + G  +     +  + +   F+  T+K +VP++E++  N R+R
Sbjct: 241 TFHSLEDRITKHLFQEATKGPDLPPGLPVIPDEYKPDFKLATRKPIVPSEEELEQNNRAR 300

Query: 308 SAKLRAGMRTV 318
           SAKLR   + +
Sbjct: 301 SAKLRVIEKII 311


>gi|16804080|ref|NP_465565.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes EGD-e]
 gi|224498509|ref|ZP_03666858.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes Finland
           1988]
 gi|224501159|ref|ZP_03669466.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL
           R2-561]
 gi|254827071|ref|ZP_05231758.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL
           N3-165]
 gi|284802488|ref|YP_003414353.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes 08-5578]
 gi|284995630|ref|YP_003417398.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes 08-5923]
 gi|20138988|sp|Q8Y5L7|RSMH_LISMO RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|16411511|emb|CAD00119.1| lmo2041 [Listeria monocytogenes EGD-e]
 gi|258599454|gb|EEW12779.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL
           N3-165]
 gi|284058050|gb|ADB68991.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes 08-5578]
 gi|284061097|gb|ADB72036.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes 08-5923]
          Length = 312

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 104/311 (33%), Positives = 176/311 (56%), Gaps = 9/311 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H  VLL + + +L   P  + +DAT G  G+S           ++ A D+D  A+  
Sbjct: 1   MFKHETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +  + DY ++ +  +A F  +++ + ++G   VDG+++DLGVSS Q+D  +RGFS+ + 
Sbjct: 61  AKIKLADYSDKVTFIKANFRDMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQD 120

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM     ++A  VVN+ + +DL RI    GEEK + +IA  I +RR+  P +TT 
Sbjct: 121 AALDMRMDQEQELTAKTVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTG 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I+  +   ++    HP  R+FQA+RI VN+E+  +   L  A   +K GG + V+
Sbjct: 181 ELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLIKPGGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K+ F   + G  +     +  + +   F+  T+K +VP++E++  N R+R
Sbjct: 241 TFHSLEDRITKQLFQEATKGPDLPPGLPVIPDEYKPDFKLATRKPIVPSEEELEQNNRAR 300

Query: 308 SAKLRAGMRTV 318
           SAKLR   + +
Sbjct: 301 SAKLRVIEKII 311


>gi|313905185|ref|ZP_07838553.1| S-adenosyl-methyltransferase MraW [Eubacterium cellulosolvens 6]
 gi|313469938|gb|EFR65272.1| S-adenosyl-methyltransferase MraW [Eubacterium cellulosolvens 6]
          Length = 326

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 111/316 (35%), Positives = 166/316 (52%), Gaps = 9/316 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
            H  VLL + I  L   P  + +D T G GG+S   CK    G  +I +D+D  A+   Q
Sbjct: 4   KHKSVLLTETIDHLAIKPEGIYVDGTLGGGGHSYEICKRLSGGGRLIGIDQDEDAIRAAQ 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +  YK++ ++ +  +  +   + + GV   DG++ DLGVSS Q+D  +RGF++++   
Sbjct: 64  ARLAKYKDRVTILRGNYRNMVQMLAEIGVTSVDGILLDLGVSSYQLDTAERGFTYREDTR 123

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM      SA DVVN    + L +++   GEEK A  IA  I   RQ  P +TT +L
Sbjct: 124 LDMRMDRRQPFSAFDVVNSYTKEKLYQVIRDYGEEKFAENIAKHICLERQKKPVETTGEL 183

Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           + +I+  +    + N  HPA R+FQA+RI VN E++ L   L      L  GG L V++F
Sbjct: 184 AEIIKGAIPAKLRANGGHPAKRTFQAIRIEVNAELDVLKDSLDGMIDILNDGGRLCVITF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  F       +      +      +   ++T+K +VPT E++ FN RS+S+
Sbjct: 244 HSLEDRIVKNNFRRNENPCICPPQFPVCVCGKKSKGSTVTRKPIVPTAEEMEFNPRSKSS 303

Query: 310 KLRAGMRTVERSIEDD 325
           KLR   R        D
Sbjct: 304 KLRVFERKRVPDSGGD 319


>gi|332799086|ref|YP_004460585.1| Ribosomal RNA small subunit methyltransferase H [Tepidanaerobacter
           sp. Re1]
 gi|332696821|gb|AEE91278.1| Ribosomal RNA small subunit methyltransferase H [Tepidanaerobacter
           sp. Re1]
          Length = 320

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 119/307 (38%), Positives = 172/307 (56%), Gaps = 9/307 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            HVP+LL K I +L+P PG V +DAT G GG+ R   K        I +D+D  A+S  +
Sbjct: 4   HHVPILLHKTIEMLDPKPGGVYVDATLGGGGHFRELLKKAEYEGTFIGIDQDEVAISTAK 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E    +     L    F  L+  + +     +DG++FDLGVSS Q D G RGFS+ K  P
Sbjct: 64  ENFSKFSYDIRLIHDNFYNLKKIIKENKLSEIDGILFDLGVSSYQFDEGSRGFSYNKDAP 123

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM     +SA DVVN+ +  +L +I+   GEE  A RIA  I + R      TT +L
Sbjct: 124 LDMRMDQRKTLSAKDVVNKMSRDELKQIISEYGEESWAGRIADFICEARSRKEITTTGEL 183

Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+  +    +    HPA ++FQALRI+VN E+E L   ++ A + LK GG + V++F
Sbjct: 184 VEIIKNAIPARARRKGGHPARKTFQALRIYVNEELEILDSSIKDAVELLKPGGRICVITF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  F   +   +  +  +I +  H  V + +T K + P+QE++  N R+RSA
Sbjct: 244 HSLEDRIVKNAFKLLATACICPKEALICTCNHTKVLKVLTSKPIYPSQEEIESNPRARSA 303

Query: 310 KLRAGMR 316
           KLR   +
Sbjct: 304 KLRVAQK 310


>gi|291544487|emb|CBL17596.1| S-adenosyl-methyltransferase MraW [Ruminococcus sp. 18P13]
          Length = 307

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 125/305 (40%), Positives = 170/305 (55%), Gaps = 9/305 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
            H+ VL E+ I  L   P  + +D T G  G++    K+   G  +IALDRDP AV    
Sbjct: 4   HHISVLPEETIEGLGVKPDGIYVDGTVGGAGHALRIAKLLTDGGKLIALDRDPDAVKTAD 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + +  Y       Q+ FSQ++  +   G   VDGV+ DLGVSS Q+D G RGFS+    P
Sbjct: 64  KRLAQYPAVV--VQSNFSQIRQVLDSLGISLVDGVLLDLGVSSHQLDTGSRGFSYHVDAP 121

Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           LDMRMS +G+SA D+VN A+ ++L RIL   GEEK A RI   IV+ RQ  P +TT  L+
Sbjct: 122 LDMRMSQTGVSARDLVNTASPEELVRILFEYGEEKFARRIVAEIVEARQKEPIETTLQLA 181

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            LI+  V        +P  ++FQA+RI VN E++ L  GL +A   LK GG L V++FHS
Sbjct: 182 ELIKAGVPAKARREKNPCKKTFQAIRIAVNGELDHLTSGLDAAFACLKPGGRLAVITFHS 241

Query: 253 LEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDRLVK+ FA      +      +    H    + + +K +    E++  N RSRSAKL
Sbjct: 242 LEDRLVKQKFAGWCKGCICPPDFPVCVCGHTPQGRLVNRKPIEAKPEELEENNRSRSAKL 301

Query: 312 RAGMR 316
           R   R
Sbjct: 302 RIIER 306


>gi|332654098|ref|ZP_08419842.1| S-adenosyl-methyltransferase MraW [Ruminococcaceae bacterium D16]
 gi|332517184|gb|EGJ46789.1| S-adenosyl-methyltransferase MraW [Ruminococcaceae bacterium D16]
          Length = 327

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 121/315 (38%), Positives = 179/315 (56%), Gaps = 8/315 (2%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVS 72
                H PVLL++ I  LN  P  + LD T G  G+SR   +      +I +DRD  A+ 
Sbjct: 2   SETFTHRPVLLDECIEALNIRPDGIYLDGTLGRAGHSREIARRLTTGRLICVDRDQAALD 61

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
             Q+ ++D+ ++ +L  + F QL   +      GVDG++FDLGVSS Q+D G RGFS+  
Sbjct: 62  AAQDRLKDWMDRVTLVHSNFDQLDAILDRLGLAGVDGMLFDLGVSSPQLDDGSRGFSYMA 121

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM  S G++A+DVVNQ + ++L RIL   GEE+ A  IA AIV+RRQ  P +TT
Sbjct: 122 DAPLDMRMDRSEGLTAADVVNQWSQEELRRILSQYGEERYAPSIAAAIVRRRQDKPIETT 181

Query: 189 QDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L  +I+  +       + HPA RSFQA+RI VN+E+  + + +R+A   L  GG L V
Sbjct: 182 LELVDIIKSAMPARALKEKQHPAKRSFQAIRIAVNDELASVDRMVRAAIPRLNKGGRLAV 241

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           ++FHSLEDR+VK   A  +          +         +   +K ++P++ +V  N R+
Sbjct: 242 ITFHSLEDRIVKTDLAEFAKGCTCPPDFPVCVCGKTPDVKLTPRKPILPSEREVEENPRA 301

Query: 307 RSAKLRAGMRTVERS 321
           RSAKLR   +  + +
Sbjct: 302 RSAKLRVAEKLKDPT 316


>gi|313884959|ref|ZP_07818711.1| S-adenosyl-methyltransferase MraW [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619650|gb|EFR31087.1| S-adenosyl-methyltransferase MraW [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 318

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 111/310 (35%), Positives = 182/310 (58%), Gaps = 11/310 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            H  VLL + I  L+  P  + +D T G  G++     +     ++ A D+D  A+   Q
Sbjct: 5   KHTSVLLHETIDQLDINPNGIYVDCTLGGAGHAAYLLSLLSPKGHLYAFDQDMNAIKNAQ 64

Query: 76  ETMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130
           + + DY  K+Q +   A F+QL++ + ++GV   DG+ +DLGVSS Q+D  +RGFS++K 
Sbjct: 65  DRLHDYIEKDQVTFIHANFAQLKEQLAERGVSYVDGIYYDLGVSSPQLDQAERGFSYKKE 124

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM+    ++A ++VN+   + + +I+   GEE+ A RI  AI + R++ P +TT 
Sbjct: 125 APLDMRMNQEDKLTAYEIVNEWPYEKIVKIIDHYGEERFAKRITRAIEQARKNKPIETTL 184

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L+ ++++ +  + + +  HPA R+FQA+RI VN+E+  +   L  A   LK GG + V+
Sbjct: 185 ELAEIVKEAIPAATRRSGGHPAKRTFQAIRIAVNDELNVIETSLNQAFTLLKVGGRISVI 244

Query: 249 SFHSLEDRLVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           SFHSLEDR+VK+ F  +S +  +     I      A F  + +K ++ +QE++  N RSR
Sbjct: 245 SFHSLEDRIVKQLFRDKSSRPDLPPNLPILPERTEADFALVNRKPILASQEELDENNRSR 304

Query: 308 SAKLRAGMRT 317
           SAKLR   R 
Sbjct: 305 SAKLRVIQRN 314


>gi|313607742|gb|EFR83963.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL
           F2-208]
          Length = 312

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 104/311 (33%), Positives = 175/311 (56%), Gaps = 9/311 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H  VLL + + +L      + +DAT G  G+S           ++ A D+D  A+  
Sbjct: 1   MFKHETVLLHETVDMLEVKSDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +  + DY ++ +  +A F  +++ + ++G   VDG+++DLGVSS Q+D  +RGFS+ + 
Sbjct: 61  AKIKLADYSDKVTFIKANFRDMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQD 120

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM     ++A  VVN+ + +DL RI    GEEK + +IA  I +RR+  P +TT 
Sbjct: 121 AALDMRMDQEQELTAKTVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTG 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I+  +   ++    HP  R+FQA+RI VN+E+  +   L  A   LK GG + V+
Sbjct: 181 ELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLLKPGGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K+ F   + G  +     +  + +   F+  T+K +VP++E++  N R+R
Sbjct: 241 TFHSLEDRITKQLFQEATKGPDLPPGLPVIPDEYKPDFKLATRKPIVPSEEELEQNNRAR 300

Query: 308 SAKLRAGMRTV 318
           SAKLR   + +
Sbjct: 301 SAKLRVIEKII 311


>gi|154505717|ref|ZP_02042455.1| hypothetical protein RUMGNA_03257 [Ruminococcus gnavus ATCC 29149]
 gi|153794014|gb|EDN76434.1| hypothetical protein RUMGNA_03257 [Ruminococcus gnavus ATCC 29149]
          Length = 315

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 102/317 (32%), Positives = 169/317 (53%), Gaps = 12/317 (3%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALD 65
           M  ++      H  VLLE+ +  L   P  + +DAT G GG++             I +D
Sbjct: 1   MEDSM---AFKHTSVLLEETVDGLKVKPDGIYVDATLGGGGHAYEVASRLSDKGRFIGID 57

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGD 122
           +D  A+      +  + E+ ++ ++ +  ++  + + G   VDG+V DLGVSS Q+D  +
Sbjct: 58  QDADAIEAAGARLSGFGEKVTIIRSNYCDMKPRLHEIGIDKVDGIVIDLGVSSYQLDTAE 117

Query: 123 RGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFS++   PLDMRM      +A D+VN  +  +L R++   GE+K A  IA  IV  R 
Sbjct: 118 RGFSYRTDAPLDMRMDQRQTTTAKDIVNDYSEAELYRVIRDYGEDKFAKNIAKHIVMERG 177

Query: 182 SAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
             P +TT  L+ +I++ +    +    HP+ R+FQA+RI +N E++ L + L      L 
Sbjct: 178 KHPIETTGQLNEVIRRAIPMKFQKTSGHPSKRTFQAIRIELNRELDVLRETLDDMIDMLN 237

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQED 299
            GG + +++FHSLEDR+VK  F           H  +    + +  + IT+K ++P++E+
Sbjct: 238 PGGRICIITFHSLEDRIVKSAFRKNENPCTCPSHFPVCVCGNISKGKVITRKPILPSEEE 297

Query: 300 VAFNRRSRSAKLRAGMR 316
           + +N RS+SAKLR   R
Sbjct: 298 LMYNSRSKSAKLRIFER 314


>gi|268610557|ref|ZP_06144284.1| S-adenosyl-methyltransferase MraW [Ruminococcus flavefaciens FD-1]
          Length = 313

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 117/308 (37%), Positives = 173/308 (56%), Gaps = 8/308 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQ 75
            H+PV+L + I  L   P  + +D T G  G+S +          +IALDRDP AV+   
Sbjct: 4   HHIPVMLTECIEGLAIDPDGIYVDGTAGGAGHSSAIAAKLSEKGRLIALDRDPDAVAVAT 63

Query: 76  ETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E +  +     +  + +S+++   D +    VDG++ DLGVSS Q+D G RGFS+    P
Sbjct: 64  ERLSKF-SNAQVIHSNYSEIRSVLDRLEIDSVDGILMDLGVSSFQLDEGSRGFSYHTDAP 122

Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           LDMRMS  G SA+D+VN  +  +L RI+   GEEK + RIA  I+K R+ AP +TT  L+
Sbjct: 123 LDMRMSKVGTSAADIVNTYSEAELARIMFEYGEEKFSRRIASNIIKAREKAPVETTLQLA 182

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I+++V        +P  ++FQALRI VN+E + L++GL  A   LK  G L V++FHS
Sbjct: 183 DIIRESVPQKARRDKNPCKKTFQALRIAVNSEFDHLSKGLEDAFYCLKPQGRLAVITFHS 242

Query: 253 LEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDRLVK+ FA+     +                + + +K +   +E++  N RSRSAKL
Sbjct: 243 LEDRLVKQKFAAWCKGCICPPDFPQCVCGRKPEGRLVNRKPIEAGEEELENNNRSRSAKL 302

Query: 312 RAGMRTVE 319
           R   R+ E
Sbjct: 303 RIIERSGE 310


>gi|315283083|ref|ZP_07871351.1| S-adenosyl-methyltransferase MraW [Listeria marthii FSL S4-120]
 gi|313613270|gb|EFR87146.1| S-adenosyl-methyltransferase MraW [Listeria marthii FSL S4-120]
          Length = 312

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 103/311 (33%), Positives = 176/311 (56%), Gaps = 9/311 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H  VLL + + +L   P  + +DAT G  G+S           ++ A D+D  A+  
Sbjct: 1   MFKHETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +  + DY ++ +  +A F  +++ + ++G   VDG+++DLGVSS Q+D  +RGFS+ + 
Sbjct: 61  AEIKLADYSDKVTFIKANFRDMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQD 120

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM     ++A  +VN+ + +DL RI    GEEK + +IA  I +RR+  P +TT 
Sbjct: 121 AALDMRMDQEQELTAKTIVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTG 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I+  +   ++    HP  R+FQA+RI VN+E+  +   L  A   +K GG + V+
Sbjct: 181 ELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLIKPGGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K+ F   + G  +     +  + +   F+  T+K +VP++E++  N R+R
Sbjct: 241 TFHSLEDRITKQLFQEATKGPDLPPGLPVIPDEYKPDFKLATRKPIVPSEEELEQNNRAR 300

Query: 308 SAKLRAGMRTV 318
           SAKLR   + +
Sbjct: 301 SAKLRVIEKII 311


>gi|224541552|ref|ZP_03682091.1| hypothetical protein CATMIT_00722 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525519|gb|EEF94624.1| hypothetical protein CATMIT_00722 [Catenibacterium mitsuokai DSM
           15897]
          Length = 315

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 110/314 (35%), Positives = 171/314 (54%), Gaps = 10/314 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73
            + +H  VLL++ I  LN     + +D T G GG+S    +     ++   D+D  A+  
Sbjct: 3   NMFEHYSVLLDETIDALNIKEDGIYVDCTLGGGGHSSRILEKLTTGHLYCFDQDAHAIEA 62

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E M    + F++  A F +++  +  +GV   DG+VFDLGVSS Q D  +RGFS+   
Sbjct: 63  ARERMSQISDNFTIIHANFKEIKARLSMEGVYKVDGIVFDLGVSSPQFDNAERGFSYNTD 122

Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM+    +SA +VVN  + +DL  IL    +EK A  IA  I K RQ  P +TT 
Sbjct: 123 ARLDMRMNQEQPLSAYEVVNNYSYQDLVTILYKYADEKFAKSIARMIEKERQVKPIETTF 182

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +++K +    +    HPA R+FQA+RI VN+E+    + L  +   L  GG + V+
Sbjct: 183 ELVEIVKKAIPARARRTGGHPAKRTFQAIRIEVNDELNVFERALTDSLDLLNVGGRVAVI 242

Query: 249 SFHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           SFHSLED++ K  F  ++    +     +IP    P  F+ +T+K +V  +++++ NRRS
Sbjct: 243 SFHSLEDKITKYMFNEKTAVPDLPMGMPVIPEEYQPH-FKKVTRKPIVADEKELSENRRS 301

Query: 307 RSAKLRAGMRTVER 320
            SAKLR   R  + 
Sbjct: 302 HSAKLRVIERIRDE 315


>gi|301300385|ref|ZP_07206587.1| S-adenosyl-methyltransferase MraW [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300851987|gb|EFK79669.1| S-adenosyl-methyltransferase MraW [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 314

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 107/309 (34%), Positives = 168/309 (54%), Gaps = 11/309 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            H+ VLL + +  LN  P    +D T G GG+S            + + D+D  A++  +
Sbjct: 5   KHITVLLNEAVDGLNIKPDGTYVDCTLGGGGHSGLILSKLSENGKLYSFDQDITAINFNK 64

Query: 76  ETMRDYKE--QFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           +  ++  E  + +  ++ F  + + +  +   GVDG+++DLGVSS Q D  DRGFS+   
Sbjct: 65  DKFKEENELGKINFIKSNFRNISEELNKRNILGVDGILYDLGVSSPQFDNADRGFSYNYD 124

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM  S  ++A DVVN  + + L RI    GEEK A  IA  I K RQ  P +TT 
Sbjct: 125 APLDMRMDQSQSLTARDVVNDWSYEQLVRIFFRYGEEKFAKSIARRIEKVRQQTPIETTG 184

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L  LI++ +    +    HPA ++FQA+RI VN+E+  L + L  A   L  GG + V+
Sbjct: 185 QLVDLIKEAIPAKARRKGGHPAKKTFQAIRIAVNDELGALEESLEQALDLLNPGGRISVI 244

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +F SLEDRLVK  F  ++    +     +  ++    ++ IT+K +VP+++++  N R+ 
Sbjct: 245 TFQSLEDRLVKVMFKQKTNLPELPPGLPVIPDSQKVEYKLITRKPIVPSEDEITHNNRAH 304

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 305 SAKLRIIEK 313


>gi|317496841|ref|ZP_07955171.1| MraW methylase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316895853|gb|EFV18005.1| MraW methylase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 312

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 97/307 (31%), Positives = 172/307 (56%), Gaps = 9/307 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            H+ VLL++ I  L+  P  + +D T G GG++   C+        I +D+D  A++   
Sbjct: 4   KHISVLLDETIEELHIKPDGIYVDGTLGGGGHAYHVCQKLSEKGRYIGIDQDADAIAAST 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + +  +K++ ++ +  +  +   + D G   VDG++ DLGVSS Q+D  +RGF++++  P
Sbjct: 64  KRLESFKDKVTIVRDNYVNMPKVLHDLGIEHVDGILLDLGVSSFQLDDKERGFTYREDVP 123

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM     ++A D+VN+ +  +L  I+   GEEK A  IA  IV +R+ +P +TT  L
Sbjct: 124 LDMRMDQRQSLTARDIVNEYSEMELFHIIRDYGEEKFAKNIAKHIVNKRKESPIETTGQL 183

Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+  +    +    HPA ++FQA+RI  N E++ L   + +    L  GG L +++F
Sbjct: 184 IEVIKSAIPMKVRAVGGHPAKKTFQAIRIECNRELDVLKDSIDAMIDLLNPGGRLCIITF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK+ F              +    + +  + +T+K ++P +E++ +N+R++S+
Sbjct: 244 HSLEDRIVKRAFKKNENPCTCPPNFPVCVCGNVSKGKQLTRKPIIPGEEELEYNKRAKSS 303

Query: 310 KLRAGMR 316
           KLR   R
Sbjct: 304 KLRVFER 310


>gi|306830621|ref|ZP_07463786.1| S-adenosyl-methyltransferase MraW [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
 gi|304427129|gb|EFM30236.1| S-adenosyl-methyltransferase MraW [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
          Length = 324

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 112/324 (34%), Positives = 175/324 (54%), Gaps = 17/324 (5%)

Query: 6   CKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVI 62
            K M++  H     H+ VLL + + +L+  P  V +DAT G  G+S           ++ 
Sbjct: 6   MKGMTTDFH-----HITVLLHETVDMLDIKPDGVYVDATLGGAGHSEYLLSKLGTTGHLY 60

Query: 63  ALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQ 117
           A D+D  A+   Q  ++DY  K Q +  +  F  L   +   GV   DG+++DLGVSS Q
Sbjct: 61  AFDQDQTAIDNAQIRLKDYIEKGQVTFIKDNFRNLASNLASHGVTEIDGILYDLGVSSPQ 120

Query: 118 IDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
           +D  +RGFS++K  PLDMRM+    +SA +VVN  +  DL RI    GE+K + +IA  I
Sbjct: 121 LDERERGFSYKKDAPLDMRMNRDQDLSAYNVVNTYDYHDLVRIFFKYGEDKFSKQIARKI 180

Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
            + R+  P +TT +L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A
Sbjct: 181 EQARKVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQA 240

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVV 294
            + L   G + V++FHSLEDRL K+ F   S   V      IP +  P     + +K ++
Sbjct: 241 IELLAVDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPEDMQPK-LALVNRKPIL 299

Query: 295 PTQEDVAFNRRSRSAKLRAGMRTV 318
           P++E++  N RS SAKLR   +  
Sbjct: 300 PSEEELEVNNRSHSAKLRVARKVR 323


>gi|227891048|ref|ZP_04008853.1| S-adenosyl-methyltransferase [Lactobacillus salivarius ATCC 11741]
 gi|227867137|gb|EEJ74558.1| S-adenosyl-methyltransferase [Lactobacillus salivarius ATCC 11741]
          Length = 323

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 108/309 (34%), Positives = 168/309 (54%), Gaps = 11/309 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            H+ VLL + +  LN  P    +D T G GG+S            + + D+D  A++  +
Sbjct: 14  KHITVLLNEAVDGLNIKPDGTYVDCTLGGGGHSGLILSKLSENGKLYSFDQDITAINFNK 73

Query: 76  ETMRDYKE--QFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           +  ++  E  + +  ++ F  + + +  +   GVDG+++DLGVSS Q D  DRGFS+   
Sbjct: 74  DKFKEENELGKINFIKSNFRNISEELNKRNILGVDGILYDLGVSSPQFDNADRGFSYNYD 133

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM  S  ++A DVVN  + + L RI    GEEK A  IA  I K RQ  P +TT 
Sbjct: 134 APLDMRMDQSQSLTARDVVNDWSYEQLVRIFFRYGEEKFAKSIARRIEKVRQQTPIETTG 193

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L  LI++ +    +    HPA ++FQA+RI VN+E+  L + L  A   L  GG + V+
Sbjct: 194 QLVDLIKEAIPAKARRKGGHPAKKTFQAIRIAVNDELGALEESLEQALDLLNPGGRISVI 253

Query: 249 SFHSLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +F SLEDRLVK  F  + S   +     +  ++    ++ IT+K +VP+++++  N R+ 
Sbjct: 254 TFQSLEDRLVKVMFKQKTSLPELPPGLPVIPDSQKVEYKLITRKPIVPSEDEITHNNRAH 313

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 314 SAKLRIIEK 322


>gi|328472688|gb|EGF43546.1| 16S rRNA m(4)C1402 methyltranserfase [Listeria monocytogenes 220]
          Length = 315

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 105/309 (33%), Positives = 174/309 (56%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H  VLL + + +L   P  + +DAT G  G+S           ++ A D+D  A+  
Sbjct: 1   MFKHETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +  + DY ++ +  +A F  +++ + ++G   VDG+++DLGVSS Q+D  +RGFS+ + 
Sbjct: 61  AKIKLADYSDKVTFIKANFRDMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQD 120

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM     ++A  VVN+ + +DL RI    GEEK + +IA  I +RR+  P +TT 
Sbjct: 121 AALDMRMDQEQELTAKIVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTG 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I+  +   ++    HP  R+FQA+RI VN+E+  +   L  A   LK GG + V+
Sbjct: 181 ELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLLKPGGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F   + G  +     +  + +   F+  T+K +VP++E++  N R+R
Sbjct: 241 TFHSLEDRITKHLFQEATKGPDLPPGLPVIPDEYKPDFKLATRKPIVPSEEELEQNNRAR 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRVIEK 309


>gi|258514333|ref|YP_003190555.1| S-adenosyl-methyltransferase MraW [Desulfotomaculum acetoxidans DSM
           771]
 gi|257778038|gb|ACV61932.1| S-adenosyl-methyltransferase MraW [Desulfotomaculum acetoxidans DSM
           771]
          Length = 311

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 120/306 (39%), Positives = 172/306 (56%), Gaps = 9/306 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H PV+L +VI  LN  PG + +D T G  G+S +  +       +I LD+DP A++   E
Sbjct: 5   HKPVMLAEVIDGLNIRPGGIYVDCTLGGAGHSSAIAQKLDGRGLLIGLDQDPEALAAASE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  Y          FS++   +       VDG+++DLGVSS Q+D   RGFS+    PL
Sbjct: 65  RLAVYGALVKTVGRNFSEIASVLSSLNIESVDGILYDLGVSSYQLDNPSRGFSYMHEAPL 124

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  SGI+A D+VN  + + L  I+   GEE+ ASRIA  I++ R+     TT  L 
Sbjct: 125 DMRMNPQSGITAGDLVNSLSQEKLAEIIQSYGEERWASRIAGFIIEERRHKNICTTGQLV 184

Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+K +   ++ +  HPA R+FQALRI VN E+E L Q LR   K L+ GG + V++FH
Sbjct: 185 QIIKKAIPAGARRDGPHPAKRTFQALRIAVNRELEILQQALRDGIKFLRTGGRICVITFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDRLVK+ F S +   +      +         + IT K +VPT+ ++  N R+RSAK
Sbjct: 245 SLEDRLVKEVFKSVAKGCICPPRLPVCLCGKQKELKIITGKPLVPTETELKDNPRARSAK 304

Query: 311 LRAGMR 316
           LR   R
Sbjct: 305 LRIAER 310


>gi|56419646|ref|YP_146964.1| S-adenosyl-methyltransferase MraW [Geobacillus kaustophilus HTA426]
 gi|68565432|sp|Q5L0Y4|RSMH_GEOKA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|56379488|dbj|BAD75396.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
          Length = 310

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 111/309 (35%), Positives = 174/309 (56%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73
           +  H  VLL++ +  LN  P  + +D T G+GG+S            + A D+D  A+  
Sbjct: 1   MFQHTTVLLKEAVDGLNIRPDGIYVDCTLGSGGHSEYLLSRLSEHGKLFAFDQDEAAIMH 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E +  Y  Q       F  LQ+ +   GV   DGV+FDLGVSS Q+D  +RGFS+Q  
Sbjct: 61  ARERLARYGRQVQFVHRNFRFLQEELSALGVKSVDGVLFDLGVSSPQLDEPERGFSYQHD 120

Query: 131 GPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM+    ++A+++VN    ++L RI    GEE+ + ++A  I + R++ P +TT 
Sbjct: 121 APLDMRMNRKQRLTAAEIVNCWPYEELVRIFFRYGEERFSKQVARKIEEVRRTRPIKTTG 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I+  +   ++ +  HPA R FQALRI VN+E+E   + L  A + L  GG + V+
Sbjct: 181 ELVDVIKAAIPAPARRSGGHPAKRIFQALRIAVNDELEAFREALEQAIELLAPGGRVSVI 240

Query: 249 SFHSLEDRLVKKFFASRSGK-VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K+ F   S    +     +  + +  V + ITKK +VP++E++  N R+R
Sbjct: 241 TFHSLEDRICKETFKKASESPPLPPGLPVLPDDYRPVLKIITKKPIVPSEEELERNHRAR 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRIAEK 309


>gi|255527766|ref|ZP_05394619.1| S-adenosyl-methyltransferase MraW [Clostridium carboxidivorans P7]
 gi|296186678|ref|ZP_06855080.1| S-adenosyl-methyltransferase MraW [Clostridium carboxidivorans P7]
 gi|296187067|ref|ZP_06855466.1| S-adenosyl-methyltransferase MraW [Clostridium carboxidivorans P7]
 gi|255508553|gb|EET84940.1| S-adenosyl-methyltransferase MraW [Clostridium carboxidivorans P7]
 gi|296048354|gb|EFG87789.1| S-adenosyl-methyltransferase MraW [Clostridium carboxidivorans P7]
 gi|296048715|gb|EFG88147.1| S-adenosyl-methyltransferase MraW [Clostridium carboxidivorans P7]
          Length = 309

 Score =  388 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 103/307 (33%), Positives = 162/307 (52%), Gaps = 9/307 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            HV VLLE+ I  LN     + +D T G GG+S    K       +I +D+D  A+    
Sbjct: 4   KHVSVLLEETIDALNVKEDGIYVDCTLGGGGHSYEILKRLSPKGRLIGIDQDTAALKAAG 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + ++ +    +     F  + + + +   + VDG++ DLGVSS Q+D  +RGFS+ K  P
Sbjct: 64  DRLKQF-NNVTYVHNNFYNIDEILQELNIEKVDGIMMDLGVSSYQLDEAERGFSYMKDAP 122

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+  S  SA D+VN  + + + +I+   GE+  A RIA  IV+RR+    +TT +L
Sbjct: 123 LDMRMNRDSSTSAYDIVNFYSEEQIFKIIKEYGEDNFAKRIAKFIVQRREKETIKTTLEL 182

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             +I++ +        HPA R+FQA+RI VN E++ L + +  +   L  GG + +++FH
Sbjct: 183 VDIIRQAIPARFQKDGHPAKRTFQAIRIEVNRELQILDKAVEDSVNRLNKGGRIAIITFH 242

Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR +K  F              +       + + I+KK + P+ E+   N RS+SAK
Sbjct: 243 SLEDRKIKVKFKQLENPCTCPPDFPMCVCGKKPLVKLISKKPIEPSIEESENNSRSKSAK 302

Query: 311 LRAGMRT 317
           LR   R 
Sbjct: 303 LRVAERI 309


>gi|187934997|ref|YP_001886637.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum B str.
           Eklund 17B]
 gi|263446060|sp|B2TS30|RSMH_CLOBB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|187723150|gb|ACD24371.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum B str.
           Eklund 17B]
          Length = 310

 Score =  388 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 107/307 (34%), Positives = 170/307 (55%), Gaps = 10/307 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
            H+ VLL + +  L+     + +D T G  G+S    +  SN   +I +D+D  A+   +
Sbjct: 4   KHISVLLNECLDALDIKDNGIYVDCTLGGAGHSSHILERLSNEGLLIGIDQDRDALKAAK 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E ++ + E      + F  + + + +     VDG++ DLGVSS Q+D G RGFS+ K  P
Sbjct: 64  ERLKRF-ENVKYVHSNFYDIDNILQNLDIPKVDGILMDLGVSSYQLDEGARGFSYMKDAP 122

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+  +  SA ++VN+ +  +L +I+   GEE+ A RI++ IV RR   P +TT +L
Sbjct: 123 LDMRMNRDNDFSAYEIVNEYSEDELYKIIRNYGEERFAKRISNCIVNRRSDKPIETTMEL 182

Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+  +    +    HPA R+FQA+RI VN+E++ L Q +      LK GG + +++F
Sbjct: 183 VDIIKAAIPAKARREGPHPAKRTFQAIRIEVNSELKILNQTIEDGVNRLKPGGRMAIITF 242

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  F   +      R   +         + I++K + PT+E+V  N RSRSA
Sbjct: 243 HSLEDRIVKLKFRELNDPCTCPREFPMCICGKKPSVRLISRKGIEPTKEEVEENPRSRSA 302

Query: 310 KLRAGMR 316
           KLR   +
Sbjct: 303 KLRIIEK 309


>gi|167765841|ref|ZP_02437894.1| hypothetical protein CLOSS21_00332 [Clostridium sp. SS2/1]
 gi|167712558|gb|EDS23137.1| hypothetical protein CLOSS21_00332 [Clostridium sp. SS2/1]
 gi|291559197|emb|CBL37997.1| S-adenosyl-methyltransferase MraW [butyrate-producing bacterium
           SSC/2]
          Length = 312

 Score =  388 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 97/307 (31%), Positives = 172/307 (56%), Gaps = 9/307 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            H+ VLL++ I  L+  P  + +D T G GG++   C+        I +D+D  A++   
Sbjct: 4   KHISVLLDETIEELHIKPDGIYVDGTLGGGGHAYHVCQKLSEKGRYIGIDQDADAIAAST 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + +  +K++ ++ +  +  +   + D G   VDG++ DLGVSS Q+D  +RGF++++  P
Sbjct: 64  KRLEPFKDKVTIVRDNYVNMPKVLHDLGIEHVDGILLDLGVSSFQLDEKERGFTYREDVP 123

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM     ++A D+VN+ +  +L  I+   GEEK A  IA  IV +R+ +P +TT  L
Sbjct: 124 LDMRMDQRQSLTARDIVNEYSEMELFHIIRDYGEEKFAKNIAKHIVNKRKESPIETTGQL 183

Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+  +    +    HPA ++FQA+RI  N E++ L   + +    L  GG L +++F
Sbjct: 184 IEVIKGAIPMKVRAVGGHPAKKTFQAIRIECNRELDVLKDSIDAMIDLLNPGGRLCIITF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK+ F              +    + +  + +T+K ++P +E++ +N+R++S+
Sbjct: 244 HSLEDRIVKRAFKKNENPCTCPPNFPVCVCGNVSKGKQLTRKPIIPGEEELEYNKRAKSS 303

Query: 310 KLRAGMR 316
           KLR   R
Sbjct: 304 KLRVFER 310


>gi|91977868|ref|YP_570527.1| methyltransferase [Rhodopseudomonas palustris BisB5]
 gi|91684324|gb|ABE40626.1| methyltransferase [Rhodopseudomonas palustris BisB5]
          Length = 398

 Score =  388 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 150/332 (45%), Positives = 199/332 (59%), Gaps = 8/332 (2%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAV 71
           +  +   H+PVL  + + LL P  G V +D TFGAGGY+R   +   + VIA+DRD  A+
Sbjct: 67  MTESGPRHIPVLGVEAVGLLAPRDGGVYVDGTFGAGGYTRLILEAADTRVIAIDRDRNAI 126

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQ 128
           + G + ++    + +L +  FS L D    +G   VDGVV D+GVSSMQ+D  DRGFSF+
Sbjct: 127 ADGFDLVQSTSGRLTLVEDRFSNLADVCEAQGAESVDGVVMDIGVSSMQVDQADRGFSFR 186

Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             GPLDMRM   G +A+DVV  A+  DL  I+ I GEEK +  +A AI+  R+ AP  TT
Sbjct: 187 LDGPLDMRMGNDGPTAADVVAHASEADLANIIYIFGEEKYSRHVARAIIAARKDAPIVTT 246

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           + L+ ++   V  SK  +IHPATR+FQALRIFVN E++EL Q L +AE+ LK GG L VV
Sbjct: 247 KALADIVATVV-RSKPGQIHPATRTFQALRIFVNEELDELYQALSAAERVLKPGGRLAVV 305

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDR+VK F   RS      RH+         F  +TK+ +V    +VA N R+RS
Sbjct: 306 SFHSLEDRIVKTFLGDRSRTGGGSRHLPELTQAAPSFTVLTKRPIVAGDAEVAANPRARS 365

Query: 309 AKLRAGMRTVERSIEDDSFVHLPRLPTLSQFR 340
           AKLR   RT   +   D    LP  PTL+   
Sbjct: 366 AKLRGAERTAAPAHRPDD---LPGWPTLASVM 394


>gi|188587754|ref|YP_001921594.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum E3 str.
           Alaska E43]
 gi|251777689|ref|ZP_04820609.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|263446056|sp|B2V4W0|RSMH_CLOBA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|188498035|gb|ACD51171.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum E3 str.
           Alaska E43]
 gi|243082004|gb|EES47894.1| S-adenosyl-methyltransferase MraW [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 310

 Score =  388 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 106/307 (34%), Positives = 170/307 (55%), Gaps = 10/307 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
            H+ VLL + +  L+     + +D T G  G+S    +  SN   +I +D+D  A+   +
Sbjct: 4   KHISVLLNECLDALDIKDNGIYVDCTLGGAGHSSHILERLSNEGLLIGIDQDRDALKAAK 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E ++ + E      + F  + + + +     VDG++ DLGVSS Q+D G RGFS+ K  P
Sbjct: 64  ERLKRF-ENVKYVHSNFYDIDNILQNLDIPKVDGILMDLGVSSYQLDEGARGFSYMKDAP 122

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+  +  SA ++VN+ +  +L +I+   GEE+ A RI++ IV RR   P +TT +L
Sbjct: 123 LDMRMNRDNDFSAYEIVNEYSEDELYKIIRNYGEERFAKRISNCIVNRRSDKPIETTMEL 182

Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+  +    +    HPA R+FQA+RI VN+E++ L Q +      LK GG + +++F
Sbjct: 183 VDIIKAAIPAKARREGPHPAKRTFQAIRIEVNSELKILNQTIEDGVNRLKPGGRMAIITF 242

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  F   +      R   +         + +++K + PT+E+V  N RSRSA
Sbjct: 243 HSLEDRIVKLKFRELNDPCTCPREFPMCICGKKPSVRLVSRKGIEPTKEEVEENPRSRSA 302

Query: 310 KLRAGMR 316
           KLR   +
Sbjct: 303 KLRIIEK 309


>gi|262831532|sp|Q133W3|RSMH_RHOPS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 332

 Score =  388 bits (997), Expect = e-106,   Method: Composition-based stats.
 Identities = 150/332 (45%), Positives = 199/332 (59%), Gaps = 8/332 (2%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAV 71
           +  +   H+PVL  + + LL P  G V +D TFGAGGY+R   +   + VIA+DRD  A+
Sbjct: 1   MTESGPRHIPVLGVEAVGLLAPRDGGVYVDGTFGAGGYTRLILEAADTRVIAIDRDRNAI 60

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQ 128
           + G + ++    + +L +  FS L D    +G   VDGVV D+GVSSMQ+D  DRGFSF+
Sbjct: 61  ADGFDLVQSTSGRLTLVEDRFSNLADVCEAQGAESVDGVVMDIGVSSMQVDQADRGFSFR 120

Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             GPLDMRM   G +A+DVV  A+  DL  I+ I GEEK +  +A AI+  R+ AP  TT
Sbjct: 121 LDGPLDMRMGNDGPTAADVVAHASEADLANIIYIFGEEKYSRHVARAIIAARKDAPIVTT 180

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           + L+ ++   V  SK  +IHPATR+FQALRIFVN E++EL Q L +AE+ LK GG L VV
Sbjct: 181 KALADIVATVV-RSKPGQIHPATRTFQALRIFVNEELDELYQALSAAERVLKPGGRLAVV 239

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDR+VK F   RS      RH+         F  +TK+ +V    +VA N R+RS
Sbjct: 240 SFHSLEDRIVKTFLGDRSRTGGGSRHLPELTQAAPSFTVLTKRPIVAGDAEVAANPRARS 299

Query: 309 AKLRAGMRTVERSIEDDSFVHLPRLPTLSQFR 340
           AKLR   RT   +   D    LP  PTL+   
Sbjct: 300 AKLRGAERTAAPAHRPDD---LPGWPTLASVM 328


>gi|317057677|ref|YP_004106144.1| S-adenosyl-methyltransferase MraW [Ruminococcus albus 7]
 gi|315449946|gb|ADU23510.1| S-adenosyl-methyltransferase MraW [Ruminococcus albus 7]
          Length = 311

 Score =  388 bits (997), Expect = e-106,   Method: Composition-based stats.
 Identities = 112/305 (36%), Positives = 168/305 (55%), Gaps = 8/305 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76
            H+PVLL + I  L+  P  +  D T G  G+SR   K      +I++DRDP AV+   E
Sbjct: 4   KHIPVLLNECIEGLDIKPDGIYCDGTAGGAGHSREIAKRLTTGRLISVDRDPEAVAVATE 63

Query: 77  TMRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +       ++ +  +S+L +    +  +G DG++ DLGVSS Q+D  +RGFS+    PL
Sbjct: 64  RLSGLPA--TVVRGNYSELDEIFARLGIEGADGILMDLGVSSYQLDNAERGFSYHTDAPL 121

Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           DMRMS  G+SA DVVN  + + L RI+   G+EK +  IA  IV+ R+  P +TT +L+ 
Sbjct: 122 DMRMSSEGLSARDVVNSYDERTLARIIFEYGDEKFSRNIAKKIVQVREDKPIETTLELAE 181

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           +I+  V        +P  ++FQA+RI VN E+E L+  L  A   L AGG L +++FHSL
Sbjct: 182 VIKSAVPQKVRREKNPCKKTFQAIRIEVNAELEHLSIALDKAFDLLNAGGRLCIITFHSL 241

Query: 254 EDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           EDRLVK+ F S     +      +         + IT+K + P+  +   N+R+ SAKLR
Sbjct: 242 EDRLVKQRFKSFCQGCICPPDFPVCVCGRTPRGKLITRKPIEPSDSENEENKRAHSAKLR 301

Query: 313 AGMRT 317
              + 
Sbjct: 302 IIEKI 306


>gi|254831717|ref|ZP_05236372.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes 10403S]
          Length = 312

 Score =  388 bits (997), Expect = e-106,   Method: Composition-based stats.
 Identities = 103/311 (33%), Positives = 175/311 (56%), Gaps = 9/311 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H  VLL + + +L   P  + +DAT G  G+S           ++ A D+D  A+  
Sbjct: 1   MFKHETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +  + DY ++ +  +A F  +++ + ++G   VDG+++DLGVSS Q+D  +RGFS+ + 
Sbjct: 61  AKIKLADYSDKVTFIKANFRDMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQD 120

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM     ++A  VVN+ + +DL RI    GEEK + +IA  I + R+  P +TT 
Sbjct: 121 AALDMRMDQEQELTAKTVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERHREVKPIETTG 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I+  +   ++    HP  R+FQA+RI VN+E+  +   L  A   +K GG + V+
Sbjct: 181 ELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLIKPGGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K+ F   + G  +     +  + +   F+  T+K +VP++E++  N R+R
Sbjct: 241 TFHSLEDRITKQLFQEATKGPDLPPGLPVIPDEYKPDFKLATRKPIVPSEEELEQNNRAR 300

Query: 308 SAKLRAGMRTV 318
           SAKLR   + +
Sbjct: 301 SAKLRVIEKII 311


>gi|254689633|ref|ZP_05152887.1| S-adenosyl-methyltransferase MraW [Brucella abortus bv. 6 str. 870]
 gi|256257883|ref|ZP_05463419.1| S-adenosyl-methyltransferase MraW [Brucella abortus bv. 9 str. C68]
 gi|260755162|ref|ZP_05867510.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           abortus bv. 6 str. 870]
 gi|260884175|ref|ZP_05895789.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           abortus bv. 9 str. C68]
 gi|297248720|ref|ZP_06932438.1| methylase MraW [Brucella abortus bv. 5 str. B3196]
 gi|260675270|gb|EEX62091.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           abortus bv. 6 str. 870]
 gi|260873703|gb|EEX80772.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           abortus bv. 9 str. C68]
 gi|297175889|gb|EFH35236.1| methylase MraW [Brucella abortus bv. 5 str. B3196]
          Length = 346

 Score =  388 bits (997), Expect = e-106,   Method: Composition-based stats.
 Identities = 167/326 (51%), Positives = 217/326 (66%), Gaps = 6/326 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           HVPVL+ +VI  L PAPG VI+D TFGAGGY+R   + G++VIA+DRDP A+  G+   +
Sbjct: 18  HVPVLIAEVIDALKPAPGAVIVDGTFGAGGYTRRILETGADVIAIDRDPTAIEAGRAMEK 77

Query: 80  DYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++  + +L ++ FS L + V         VDGVV D+GVSSMQID  +RGFSFQK GPLD
Sbjct: 78  EFPGRLNLVESRFSALDEAVARMSGAGKKVDGVVLDIGVSSMQIDEAERGFSFQKDGPLD 137

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRMS  G SA+D VN+    DL RI   LGEE+ A RIA  I KRR + PF  T DL++ 
Sbjct: 138 MRMSSRGPSAADAVNRLKTGDLARIFNFLGEERHAGRIARMIEKRRAAKPFTRTLDLANA 197

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           I+  V  +  +RIHPATR FQALR++VN+E+ ELA+ L +AE+ LK GG L+VV+FHSLE
Sbjct: 198 IETLVGRNPKDRIHPATRVFQALRVYVNDELGELARALLAAERILKPGGRLVVVTFHSLE 257

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           DR+VK+FFA R+G     RHM  ++     F    K  V PT E+   N R+RSAKLRAG
Sbjct: 258 DRMVKRFFADRAGGSAGSRHMPETHMRLPSFTPAVKGPVGPTPEEEERNPRARSAKLRAG 317

Query: 315 MRTVERSIEDD-SFVHLPRLPTLSQF 339
           +RT    +EDD S   LP+LP  ++ 
Sbjct: 318 IRTENPPLEDDLSLFGLPKLPETNEL 343


>gi|194014300|ref|ZP_03052917.1| S-adenosyl-methyltransferase MraW [Bacillus pumilus ATCC 7061]
 gi|194013326|gb|EDW22891.1| S-adenosyl-methyltransferase MraW [Bacillus pumilus ATCC 7061]
          Length = 310

 Score =  388 bits (997), Expect = e-106,   Method: Composition-based stats.
 Identities = 108/309 (34%), Positives = 167/309 (54%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSC 73
           +  H  VLL++ +  LN       +D T G  G+S       S    +I  D+D  A+  
Sbjct: 1   MFQHETVLLKETVDGLNVKEDGTYVDCTLGGAGHSSYLLSQLSEKGTLIGFDQDDAALDH 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E + D K      ++ F  L++ + ++G   VDGV+FDLGVSS Q+D  +RGFS+   
Sbjct: 61  AREKLADSKANILFIKSNFRYLKERLNEQGITSVDGVIFDLGVSSPQLDTPERGFSYHHD 120

Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM  S  +SA  VVN+   +DL RI    GEEK + +IA  I + R+ AP +TT 
Sbjct: 121 APLDMRMDQSAALSAKKVVNEWPFEDLVRIFYKYGEEKFSKQIARKIEEARKKAPIETTG 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I++ +   ++    HPA R FQA+RI VN+E++   + L  A + L   G + V+
Sbjct: 181 ELVDIIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALEQAIELLNPKGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F   S    +     +         + IT+K +V +++++  N R+R
Sbjct: 241 TFHSLEDRICKSTFREMSSLPELPHGLPVIPEGLEPKLKLITRKPIVASEQELEHNNRAR 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRIAEK 309


>gi|261419308|ref|YP_003252990.1| S-adenosyl-methyltransferase MraW [Geobacillus sp. Y412MC61]
 gi|297530722|ref|YP_003671997.1| S-adenosyl-methyltransferase MraW [Geobacillus sp. C56-T3]
 gi|319766124|ref|YP_004131625.1| S-adenosyl-methyltransferase MraW [Geobacillus sp. Y412MC52]
 gi|261375765|gb|ACX78508.1| S-adenosyl-methyltransferase MraW [Geobacillus sp. Y412MC61]
 gi|297253974|gb|ADI27420.1| S-adenosyl-methyltransferase MraW [Geobacillus sp. C56-T3]
 gi|317110990|gb|ADU93482.1| S-adenosyl-methyltransferase MraW [Geobacillus sp. Y412MC52]
          Length = 310

 Score =  388 bits (997), Expect = e-106,   Method: Composition-based stats.
 Identities = 113/309 (36%), Positives = 176/309 (56%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H  VLL++ +  LN  P  + +D T G GG+S            + A D+D  A+  
Sbjct: 1   MFQHTTVLLKEAVDGLNIRPDGIYVDCTLGGGGHSEYLLSRLSARGKLFAFDQDEAAIMH 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E +  Y  Q       F  LQ+ +   GV   DGV+FDLGVSS Q+D  +RGFS+Q  
Sbjct: 61  ARERLARYGRQVQFVHRNFRFLQEELSALGVKSVDGVLFDLGVSSPQLDEPERGFSYQHD 120

Query: 131 GPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM     ++A+++VN+   ++L RI    GEEK + ++A  I + R++ P +TT 
Sbjct: 121 APLDMRMDRKQRLTAAEIVNRWPYEELVRIFFRYGEEKFSKQVARKIEEVRRTRPIKTTG 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I++ +   ++ +  HPA R FQALRI VN+E+E   + L  A + L +GG + V+
Sbjct: 181 ELVDVIKEAIPAPARRSGGHPAKRIFQALRIAVNDELEAFREALEQAIELLASGGRVSVI 240

Query: 249 SFHSLEDRLVKKFFASRSGK-VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K+ F   S    +     +  + +  V + ITKK +VP++E++  NRR+R
Sbjct: 241 TFHSLEDRICKETFKKASESPPLPPGLPVLPDDYRPVLKIITKKPIVPSEEELERNRRAR 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRIAEK 309


>gi|258511253|ref|YP_003184687.1| S-adenosyl-methyltransferase MraW [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257477979|gb|ACV58298.1| S-adenosyl-methyltransferase MraW [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 316

 Score =  388 bits (997), Expect = e-106,   Method: Composition-based stats.
 Identities = 115/306 (37%), Positives = 185/306 (60%), Gaps = 9/306 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VLLE+ +  L P PG V +DAT G GG++    +       VIA D+D  A++  + 
Sbjct: 5   HETVLLEEAVEALRPQPGGVYVDATLGGGGHTARLLERSVPDGAVIAFDQDETAIAHAEP 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             R Y  + +L +A F+++++ +   GV   DGV+FDLGVSS Q D  +RGFS+   GPL
Sbjct: 65  LKRQYPGRLTLVKANFAEMEERLRALGVTAVDGVLFDLGVSSPQFDLPERGFSYWHEGPL 124

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     ++A ++VN+ + ++L RI+   GEE+ A+ IA AI + R   P +TT +L+
Sbjct: 125 DMRMDRHQPLTAREIVNEWDEQELARIIREYGEERFATAIARAITRARSKKPIETTTELA 184

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +++  +  + + +  HPA R+FQA+RI VN+E+  L +G+ +A +AL+ GG L V++FH
Sbjct: 185 EIVKSAIPAAARRSGPHPARRTFQAIRIAVNDELGALERGMEAAFRALRPGGRLSVITFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR VK+ F + +   +      +       + + +++K V P+ E++  N R+RSAK
Sbjct: 245 SLEDRAVKRLFQTWAQGCICPPEFPVCQCGRKPLGRMVSRKPVTPSSEELERNPRARSAK 304

Query: 311 LRAGMR 316
           LRA  +
Sbjct: 305 LRAFEK 310


>gi|90962030|ref|YP_535946.1| S-adenosyl-methyltransferase MraW [Lactobacillus salivarius UCC118]
 gi|122448863|sp|Q1WT95|RSMH_LACS1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|90821224|gb|ABD99863.1| S-adenosyl-methyltransferase [Lactobacillus salivarius UCC118]
 gi|300214731|gb|ADJ79147.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Lactobacillus salivarius CECT 5713]
          Length = 314

 Score =  388 bits (997), Expect = e-106,   Method: Composition-based stats.
 Identities = 108/309 (34%), Positives = 167/309 (54%), Gaps = 11/309 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            H+ VLL + +  LN  P    +D T G GG+S            + + D+D  A++  +
Sbjct: 5   KHITVLLNEAVDGLNIKPDGTYVDCTLGGGGHSGLILSKLSENGKLYSFDQDITAINFNK 64

Query: 76  ETMRDYKE--QFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           +   +  E  + +  ++ F  + + +  +   GVDG+++DLGVSS Q D  DRGFS+   
Sbjct: 65  DKFEEENELGKINFIKSNFRNISEELNKRNILGVDGILYDLGVSSPQFDNADRGFSYNYD 124

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM  S  ++A DVVN  + + L RI    GEEK A  IA  I K RQ  P +TT 
Sbjct: 125 APLDMRMDQSQSLTARDVVNDWSYEQLVRIFFRYGEEKFAKSIARRIEKVRQQTPIETTG 184

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L  LI++ +    +    HPA ++FQA+RI VN+E+  L + L  A   L  GG + V+
Sbjct: 185 QLVDLIKEAIPAKARRKGGHPAKKTFQAIRIAVNDELGALEESLEQALDLLNPGGRISVI 244

Query: 249 SFHSLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +F SLEDRLVK  F  + S   +     +  ++    ++ IT+K +VP+++++  N R+ 
Sbjct: 245 TFQSLEDRLVKVMFKQKTSLPELPPGLPVIPDSQKVEYKLITRKPIVPSEDEITHNNRAH 304

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 305 SAKLRIIEK 313


>gi|291166340|gb|EFE28386.1| S-adenosyl-methyltransferase MraW [Filifactor alocis ATCC 35896]
          Length = 310

 Score =  388 bits (997), Expect = e-106,   Method: Composition-based stats.
 Identities = 113/305 (37%), Positives = 174/305 (57%), Gaps = 8/305 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77
           H PV+L + I +LN  P  + +D T G  G+S    K      +IA D+D  A+   +  
Sbjct: 5   HKPVMLNECIDMLNIVPSGIYVDGTLGGAGHSLEIVKRLDSGKLIAFDQDIEAIKNAKIK 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++ Y+++  L    F  ++  + D  +   +G++ DLGVSS Q+D  +RGFS++   PLD
Sbjct: 65  LKSYEDKVILIHDNFRNIKKSLEDIDIFRINGLLLDLGVSSYQLDSPERGFSYRYDAPLD 124

Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM+ S  ISA  +VN  + +DL RI+   GEEK ASRIA  IV+ R   P  TT +L  
Sbjct: 125 MRMNQSSQISAKYIVNTYSEEDLKRIIRDYGEEKWASRIAQFIVEERMKKPIDTTGELVQ 184

Query: 194 LIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +I+  +    +    HPA R+FQA+RI  N+E++ +   L SA + L  GG++ V++FHS
Sbjct: 185 IIKAAIPKKAREEEQHPAKRTFQAIRIETNHELDVIHDVLESAVELLLPGGVISVITFHS 244

Query: 253 LEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK FF   S   +      +    H A  +   +K +VP++E++  N RSRSAK+
Sbjct: 245 LEDRIVKNFFRDESTGCICSPEIPVCVCNHQARLRLAHRKPLVPSEEELRENPRSRSAKV 304

Query: 312 RAGMR 316
           R  ++
Sbjct: 305 RGAIK 309


>gi|260437306|ref|ZP_05791122.1| S-adenosyl-methyltransferase MraW [Butyrivibrio crossotus DSM 2876]
 gi|292810218|gb|EFF69423.1| S-adenosyl-methyltransferase MraW [Butyrivibrio crossotus DSM 2876]
          Length = 313

 Score =  388 bits (997), Expect = e-106,   Method: Composition-based stats.
 Identities = 102/309 (33%), Positives = 166/309 (53%), Gaps = 10/309 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H  VLL + I  LN  P  + +D T G  G+S   C+       +I +D+D  A+     
Sbjct: 5   HKSVLLNECIENLNIKPDGIYVDGTLGGAGHSYHICERLSKKGRLIGIDQDEDAIRAATT 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK-SGP 132
            +  +K++ ++ +  +S +++ +   G   VDG++ D+GVSS Q+D  +RGF++++   P
Sbjct: 65  RLEPFKDRVTIVKDNYSNIKNVLVSLGIDKVDGILLDIGVSSYQLDNAERGFTYKEEDAP 124

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM   SGI+A DVVN  +  +L R++   GEE+ A  IA  I   R  +   TT  L
Sbjct: 125 LDMRMDRQSGITAQDVVNDYSEMELFRVIRDYGEEQFAKNIAKHICIERNKSRITTTGRL 184

Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           + +I+  +    + N  HPA ++FQA+RI VN E+  L + + +    L   G L +++F
Sbjct: 185 TEIIKAAIPMKFRVNGGHPAKKTFQAIRIEVNRELYVLEESIDTMIDLLNDKGRLCIITF 244

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  F              +    +      IT+K +VPT E++  N+R++S+
Sbjct: 245 HSLEDRIVKNKFRDNVNTCTCPPDFPVCVCGNRPKGVIITRKPIVPTDEEIEINKRAKSS 304

Query: 310 KLRAGMRTV 318
           KLR   R +
Sbjct: 305 KLRVFERVI 313


>gi|171778125|ref|ZP_02919382.1| hypothetical protein STRINF_00217 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171283107|gb|EDT48531.1| hypothetical protein STRINF_00217 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 339

 Score =  387 bits (996), Expect = e-106,   Method: Composition-based stats.
 Identities = 109/323 (33%), Positives = 169/323 (52%), Gaps = 15/323 (4%)

Query: 6   CKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVI 62
            K M+   H     H+ VLL + + +L+  P  + +DAT G  G+S           ++ 
Sbjct: 21  MKGMTKDFH-----HITVLLHETVDMLDIEPDGIYVDATLGGAGHSEYLLSKLGPNGHLY 75

Query: 63  ALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQ 117
           A D+D  A+   Q  ++DY  K Q +  +  F  L   +   GV   DG+++DLGVSS Q
Sbjct: 76  AFDQDQTAIDNAQIRLKDYIEKGQVTFIKDNFRNLASNLAMHGVTEIDGILYDLGVSSPQ 135

Query: 118 IDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
           +D  +RGFS++K  PLDMRM+    ++A DVVN  +  DL RI    GE+K + +IA  I
Sbjct: 136 LDERERGFSYKKDAPLDMRMNREQDLTAYDVVNTYDYYDLVRIFYKYGEDKFSKQIARKI 195

Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
            + RQ  P +TT +L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A
Sbjct: 196 EQARQEKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQA 255

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295
              L   G + V++FHSLEDRL K+ F   S   +        +        + +K ++P
Sbjct: 256 IDLLAVDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDMQPKLTLVNRKPILP 315

Query: 296 TQEDVAFNRRSRSAKLRAGMRTV 318
            QE++  N RS SAKLR   +  
Sbjct: 316 RQEELEANNRSHSAKLRVARKVR 338


>gi|295696471|ref|YP_003589709.1| S-adenosyl-methyltransferase MraW [Bacillus tusciae DSM 2912]
 gi|295412073|gb|ADG06565.1| S-adenosyl-methyltransferase MraW [Bacillus tusciae DSM 2912]
          Length = 315

 Score =  387 bits (996), Expect = e-106,   Method: Composition-based stats.
 Identities = 113/311 (36%), Positives = 190/311 (61%), Gaps = 10/311 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H PVLL +V+A+L P PG + +D T G GG++++  +       +I +D+D  A++  +E
Sbjct: 5   HEPVLLHEVLAILQPRPGGLYVDGTLGGGGHAQAILEAAAPDGRLIGIDQDDEALTASKE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVP----DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            +  Y  + +  +  F ++++ +      +GVDG++ D+G+SS Q+D  +RGFS++   P
Sbjct: 65  RLTPYGGRVTTVKGNFRRIKEILWGLGVIEGVDGILLDVGLSSPQVDEAERGFSYRSDAP 124

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  SG ++A D+VN     +L R++   GEE+ A+RIA AIV+RRQ    +TT +L
Sbjct: 125 LDMRMDLSGTLTARDIVNSWPEGELARVVRDYGEERWAARIAKAIVRRRQRQAIETTGEL 184

Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           + L+++ +  + + +  HPA R+FQALRI VN+E+  L +G++ A + L+ GG L V++F
Sbjct: 185 AELVKEAIPAAARRHGPHPARRTFQALRIAVNDELGALEEGVKGALEVLRPGGRLAVIAF 244

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK+  A  +   +      + +       + I ++ +VP  E++A N R+RSA
Sbjct: 245 HSLEDRIVKRILAEEARSCICPPEAPVCTCGRRPRVRLIGRRPIVPGPEELARNPRARSA 304

Query: 310 KLRAGMRTVER 320
           KLR   R  + 
Sbjct: 305 KLRGAERLAQE 315


>gi|295109202|emb|CBL23155.1| S-adenosyl-methyltransferase MraW [Ruminococcus obeum A2-162]
          Length = 314

 Score =  387 bits (996), Expect = e-106,   Method: Composition-based stats.
 Identities = 102/307 (33%), Positives = 169/307 (55%), Gaps = 9/307 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            H  VLL++ I  L+  P  + +D T G  G++   C+        I +D+D  A+    
Sbjct: 4   KHKSVLLDETIEGLSIRPDGIYVDGTLGGAGHASEVCQRLSAKGRFIGIDQDQDAIIAAS 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E +  Y+++ ++ ++ +  + + + + G   V+G+V DLGVSS Q+D  +RGF+++   P
Sbjct: 64  ERLAAYEDRVTIIRSNYCYMVNELKNLGIQKVNGIVLDLGVSSYQLDNEERGFTYRVDAP 123

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM      +A+D+VN  + K+L RI+   GE+K A  IA  IV  R  AP QTT +L
Sbjct: 124 LDMRMDQRQSRTAADIVNGYDEKELYRIIRDYGEDKFAKNIAKHIVAARAKAPIQTTGEL 183

Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           + +I++++    +    HPA R+FQA+RI +N E++ L + L      L  GG + +++F
Sbjct: 184 TEIIRQSIPMKIQATGGHPAKRTFQAIRIELNRELDVLRESLDGMIDLLDDGGRICIITF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  F              +      +  + IT+K ++P+  ++  N RS+SA
Sbjct: 244 HSLEDRIVKTIFRKNENPCTCPPDFPVCVCGKESKGKVITRKPILPSAVEMEENPRSKSA 303

Query: 310 KLRAGMR 316
           KLR   R
Sbjct: 304 KLRIFER 310


>gi|310642996|ref|YP_003947754.1| ribosomal RNA small subunit methyltransferase h [Paenibacillus
           polymyxa SC2]
 gi|309247946|gb|ADO57513.1| Ribosomal RNA small subunit methyltransferase H [Paenibacillus
           polymyxa SC2]
          Length = 316

 Score =  387 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 111/315 (35%), Positives = 172/315 (54%), Gaps = 15/315 (4%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSC 73
           +  H+ VL E+    LN     + +D T G  G+S            +IA D+D +A++ 
Sbjct: 1   MFHHITVLKEEATQALNIRQDGIYVDCTLGGAGHSSVIASQLGPEGRLIAFDQDDWALNN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---------VDGVVFDLGVSSMQIDCGDRG 124
            +E +  Y+ + SL ++ F  LQD + + G         V G++FDLGVSS Q D G+RG
Sbjct: 61  AREKLSAYEGKISLVKSNFRHLQDKLAELGLPEKDGVPQVQGILFDLGVSSPQFDEGERG 120

Query: 125 FSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           FS+    PLDMRM  S  ++A ++VN+    ++ RIL   GEEK + RIA  +V+RR + 
Sbjct: 121 FSYNHDAPLDMRMDQSSSLTAYEIVNEWPEAEIARILFQYGEEKFSRRIAKIMVERRMNK 180

Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           P  TT +L  +I++ +  + +    HPA RSFQALRI VN+E+  L   L  A + L  G
Sbjct: 181 PIHTTGELVDIIKEGIPAAARRTGGHPAKRSFQALRIAVNDELGALEDTLHQAVRCLAPG 240

Query: 243 GLLIVVSFHSLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           G + V++FHSLEDR+ K  F    +  +      I  +      + + +K +V +++++ 
Sbjct: 241 GRISVITFHSLEDRICKHIFKEYLAKSIYPSDLPILDDKMVGDLKLVNRKPIVASEQELE 300

Query: 302 FNRRSRSAKLRAGMR 316
            N RSRSAKLR   +
Sbjct: 301 LNPRSRSAKLRVAEK 315


>gi|163843695|ref|YP_001628099.1| S-adenosyl-methyltransferase MraW [Brucella suis ATCC 23445]
 gi|263446883|sp|B0CHM8|RSMH_BRUSI RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|163674418|gb|ABY38529.1| S-adenosyl-methyltransferase MraW [Brucella suis ATCC 23445]
          Length = 346

 Score =  387 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 167/326 (51%), Positives = 217/326 (66%), Gaps = 6/326 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           HVPVL+ +VI  L PAPG VI+D TFGAGGY+R   + G++VIA+DRDP A+  G+   +
Sbjct: 18  HVPVLIAEVIDALKPAPGAVIVDGTFGAGGYTRRILETGADVIAIDRDPTAIEAGRAMEK 77

Query: 80  DYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++  + +L ++ FS L + V         VDGVV D+GVSSMQID  +RGFSFQK GPLD
Sbjct: 78  EFPGRLNLVESRFSALDEAVARMSGAGKKVDGVVLDIGVSSMQIDEAERGFSFQKDGPLD 137

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRMS  G SA+D VN+    DL RI   LGEE+ A RIA  I KRR + PF  T DL++ 
Sbjct: 138 MRMSSGGPSAADAVNRLKTGDLARIFNFLGEERHAGRIARMIEKRRAAKPFTRTLDLANA 197

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           I+  V  +  +RIHPATR FQALR++VN+E+ ELA+ L +AE+ LK GG L+VV+FHSLE
Sbjct: 198 IETLVGRNPKDRIHPATRVFQALRVYVNDELGELARALLAAERILKPGGRLVVVTFHSLE 257

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           DR+VK+FFA R+G     RHM  ++     F    K  V PT E+   N R+RSAKLRAG
Sbjct: 258 DRMVKRFFADRAGGSAGSRHMPETHMRLPSFTPAVKGAVGPTPEEEERNPRARSAKLRAG 317

Query: 315 MRTVERSIEDD-SFVHLPRLPTLSQF 339
           +RT    +EDD S   LP+LP  ++ 
Sbjct: 318 IRTENPPLEDDLSLFGLPKLPETNEL 343


>gi|291557117|emb|CBL34234.1| S-adenosyl-methyltransferase MraW [Eubacterium siraeum V10Sc8a]
          Length = 308

 Score =  387 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 118/303 (38%), Positives = 176/303 (58%), Gaps = 8/303 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77
           H+PVLL + I  L+  P  + +D T G  G+S    K      +I  DRDP AV   +E 
Sbjct: 7   HIPVLLSETIESLDIKPDGIYVDCTTGFAGHSSEIAKRLTTGRLIGFDRDPDAVKAAEEK 66

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++DY    +L    FS   + + + GV   DGV+ DLGVSS Q+D  +RGFS+ +  PLD
Sbjct: 67  LKDYPH--TLINRKFSTFDESLDEIGVGKVDGVLMDLGVSSYQLDTAERGFSYHEDAPLD 124

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRMS SG+SA DVVN+ + + L +IL   GEEK A  I   I+K R++AP +TT +L+ +
Sbjct: 125 MRMSKSGLSAYDVVNEYSKEQLEKILFEYGEEKFAHGIVSGILKARETAPIKTTLELAEI 184

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           +++ V        +P  ++FQA+RI VN E++EL +G+  A + LKAGG L +++FHS+E
Sbjct: 185 VKRNVPLKVRKEKNPCKKTFQAIRIEVNGELDELKKGMSEAFERLKAGGRLAIITFHSIE 244

Query: 255 DRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           DR+VK  F              +         +++ +K V  ++E++A N RSRSAKLR 
Sbjct: 245 DRIVKNTFREYCTGCTCPPDFPVCVCGKKPRGRTVYRKPVTASEEELAVNNRSRSAKLRV 304

Query: 314 GMR 316
             +
Sbjct: 305 IEK 307


>gi|47097273|ref|ZP_00234832.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes str. 1/2a
           F6854]
 gi|254899261|ref|ZP_05259185.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes J0161]
 gi|254912599|ref|ZP_05262611.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Listeria
           monocytogenes J2818]
 gi|254936926|ref|ZP_05268623.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes F6900]
 gi|47014346|gb|EAL05320.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes str. 1/2a
           F6854]
 gi|258609526|gb|EEW22134.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes F6900]
 gi|293590591|gb|EFF98925.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Listeria
           monocytogenes J2818]
          Length = 312

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 104/311 (33%), Positives = 176/311 (56%), Gaps = 9/311 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H  VLL + + +L   P  + +DAT G  G+S           ++ A D+D  A+  
Sbjct: 1   MFKHETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +  + DY ++ +  +A F  +++ + ++G   VDG+++DLGVSS Q+D  +RGFS+ + 
Sbjct: 61  AKIKLADYSDKVTFIKANFRDMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQD 120

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM     ++A  VVN+ + +DL RI    GEEK + +IA  I +RR+  P +TT 
Sbjct: 121 AALDMRMDQEQELTAKTVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTG 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I+  +   ++    HP  R+FQA+RI VN+E+  +   L  A   +K GG + V+
Sbjct: 181 ELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLIKPGGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K+ F   + G  +     +  + +   F+  T+K +VP++E++  N R+R
Sbjct: 241 TFHSLEDRITKQLFQEATKGPDLPPGLPVIPDEYKPDFKLATRKPIVPSEEELEQNNRAR 300

Query: 308 SAKLRAGMRTV 318
           SAKLR   + +
Sbjct: 301 SAKLRVIKKII 311


>gi|325264796|ref|ZP_08131525.1| S-adenosyl-methyltransferase MraW [Clostridium sp. D5]
 gi|324030088|gb|EGB91374.1| S-adenosyl-methyltransferase MraW [Clostridium sp. D5]
          Length = 315

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 104/306 (33%), Positives = 171/306 (55%), Gaps = 9/306 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H  VLLE+ +  L   P  + +DAT G GG++   C       + I +D+D  A+     
Sbjct: 9   HTSVLLEETVDGLAVKPDGIYVDATLGGGGHAFEVCSKLSSKGSFIGIDQDAAAIEAASA 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + D+ E+ ++ ++ +  ++  + + G   VDG+V DLGVSS Q+D  +RGFS++   PL
Sbjct: 69  RLLDFGERVTIIRSNYCDMKPRLHEIGIDKVDGIVLDLGVSSYQLDTAERGFSYRTDAPL 128

Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM    + +A D+VN  +  DL R++   GE++ A  IA  IV  R   P +TT  L+
Sbjct: 129 DMRMDQRQMMTAKDIVNDYSESDLYRVIRDYGEDRFAKNIAKHIVIARGKGPIETTGQLN 188

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+K +    +    HP+ R++QA+RI +N E++ L + L    + LK GG + +++FH
Sbjct: 189 EIIRKAIPMKIQKTSGHPSKRTYQAIRIELNRELDVLRETLDDMIELLKPGGRICIITFH 248

Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK  F           H  +    + +  + IT+K ++P++E++  N RS+SAK
Sbjct: 249 SLEDRIVKSAFRKNENPCTCPSHFPVCVCGNVSKGKVITRKPILPSEEELEENSRSKSAK 308

Query: 311 LRAGMR 316
           LR   R
Sbjct: 309 LRIFER 314


>gi|225574511|ref|ZP_03783121.1| hypothetical protein RUMHYD_02588 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038298|gb|EEG48544.1| hypothetical protein RUMHYD_02588 [Blautia hydrogenotrophica DSM
           10507]
          Length = 336

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 101/314 (32%), Positives = 169/314 (53%), Gaps = 9/314 (2%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70
           ++    H  VLLE+ I  L   P  + +D T G  G++   CK        I +D+D  A
Sbjct: 21  NNMEFKHKSVLLEETIDGLRVKPDGIYVDGTLGGAGHAVEVCKKLSAKGRFIGIDQDQDA 80

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSF 127
           +    E +RD+ ++ ++ ++ +      + ++G   VDG++ DLGVSS Q+D  +RGF++
Sbjct: 81  IIAANERLRDFGDRITIIRSNYCYAVKELRERGIQQVDGILLDLGVSSYQLDNPERGFTY 140

Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           +   PLDMRM   +  +A D+VN    ++L RI+   GE+K A  IA  IV  R   P +
Sbjct: 141 RVDAPLDMRMDQRASQTAGDIVNGYEERELYRIIRDYGEDKFAKNIAKHIVMERARKPIE 200

Query: 187 TTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           TT +L+ +I++ +    +    HPA R+FQA+RI +N+E++ L   L      L   G +
Sbjct: 201 TTGELTEVIRRAIPMKMQAAGGHPAKRTFQAIRIELNHELDVLRDSLDEMVDILSDRGRI 260

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
            +++FHSLEDR+VK  F              +      +  + IT+K ++P+++++  N 
Sbjct: 261 CIITFHSLEDRIVKTIFRKNENPCTCPSNFPVCVCGKKSKGKVITRKPILPSEDEMEENP 320

Query: 305 RSRSAKLRAGMRTV 318
           R++SAKLR   RT 
Sbjct: 321 RAKSAKLRIFERTR 334


>gi|237815839|ref|ZP_04594836.1| S-adenosyl-methyltransferase MraW [Brucella abortus str. 2308 A]
 gi|237789137|gb|EEP63348.1| S-adenosyl-methyltransferase MraW [Brucella abortus str. 2308 A]
 gi|326409463|gb|ADZ66528.1| Bacterial methyltransferase [Brucella melitensis M28]
 gi|326539169|gb|ADZ87384.1| S-adenosyl-methyltransferase MraW [Brucella melitensis M5-90]
          Length = 347

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 167/326 (51%), Positives = 217/326 (66%), Gaps = 6/326 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           HVPVL+ +VI  L PAPG VI+D TFGAGGY+R   + G++VIA+DRDP A+  G+   +
Sbjct: 19  HVPVLIAEVIDALKPAPGAVIVDGTFGAGGYTRRILETGADVIAIDRDPTAIEAGRAMEK 78

Query: 80  DYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++  + +L ++ FS L + V         VDGVV D+GVSSMQID  +RGFSFQK GPLD
Sbjct: 79  EFPGRLNLVESRFSALDEAVARMSGAGKKVDGVVLDIGVSSMQIDEAERGFSFQKDGPLD 138

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRMS  G SA+D VN+    DL RI   LGEE+ A RIA  I KRR + PF  T DL++ 
Sbjct: 139 MRMSSRGPSAADAVNRLKTGDLARIFNFLGEERHAGRIARMIEKRRAAKPFTRTLDLANA 198

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           I+  V  +  +RIHPATR FQALR++VN+E+ ELA+ L +AE+ LK GG L+VV+FHSLE
Sbjct: 199 IETLVGRNPKDRIHPATRVFQALRVYVNDELGELARALLAAERILKPGGRLVVVTFHSLE 258

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           DR+VK+FFA R+G     RHM  ++     F    K  V PT E+   N R+RSAKLRAG
Sbjct: 259 DRMVKRFFADRAGGSAGSRHMPETHMRLPSFTPAVKGAVGPTPEEEERNPRARSAKLRAG 318

Query: 315 MRTVERSIEDD-SFVHLPRLPTLSQF 339
           +RT    +EDD S   LP+LP  ++ 
Sbjct: 319 IRTENPPLEDDLSLFGLPKLPETNEL 344


>gi|17986854|ref|NP_539488.1| S-adenosyl-methyltransferase MraW [Brucella melitensis bv. 1 str.
           16M]
 gi|23502310|ref|NP_698437.1| S-adenosyl-methyltransferase MraW [Brucella suis 1330]
 gi|62290332|ref|YP_222125.1| S-adenosyl-methyltransferase MraW [Brucella abortus bv. 1 str.
           9-941]
 gi|82700256|ref|YP_414830.1| S-adenosyl-methyltransferase MraW [Brucella melitensis biovar
           Abortus 2308]
 gi|161619387|ref|YP_001593274.1| S-adenosyl-methyltransferase MraW [Brucella canis ATCC 23365]
 gi|189024565|ref|YP_001935333.1| S-adenosyl-methyltransferase MraW [Brucella abortus S19]
 gi|225852921|ref|YP_002733154.1| S-adenosyl-methyltransferase MraW [Brucella melitensis ATCC 23457]
 gi|254694123|ref|ZP_05155951.1| S-adenosyl-methyltransferase MraW [Brucella abortus bv. 3 str.
           Tulya]
 gi|254697775|ref|ZP_05159603.1| S-adenosyl-methyltransferase MraW [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254702160|ref|ZP_05163988.1| S-adenosyl-methyltransferase MraW [Brucella suis bv. 5 str. 513]
 gi|254704697|ref|ZP_05166525.1| S-adenosyl-methyltransferase MraW [Brucella suis bv. 3 str. 686]
 gi|254708111|ref|ZP_05169939.1| S-adenosyl-methyltransferase MraW [Brucella pinnipedialis
           M163/99/10]
 gi|254710480|ref|ZP_05172291.1| S-adenosyl-methyltransferase MraW [Brucella pinnipedialis B2/94]
 gi|254730664|ref|ZP_05189242.1| S-adenosyl-methyltransferase MraW [Brucella abortus bv. 4 str. 292]
 gi|256031974|ref|ZP_05445588.1| S-adenosyl-methyltransferase MraW [Brucella pinnipedialis
           M292/94/1]
 gi|256045069|ref|ZP_05447970.1| S-adenosyl-methyltransferase MraW [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256160173|ref|ZP_05457867.1| S-adenosyl-methyltransferase MraW [Brucella ceti M490/95/1]
 gi|256255379|ref|ZP_05460915.1| S-adenosyl-methyltransferase MraW [Brucella ceti B1/94]
 gi|256263598|ref|ZP_05466130.1| bacterial methyltransferase [Brucella melitensis bv. 2 str. 63/9]
 gi|256369855|ref|YP_003107366.1| S-adenosyl-methyltransferase [Brucella microti CCM 4915]
 gi|260169111|ref|ZP_05755922.1| S-adenosyl-methyltransferase MraW [Brucella sp. F5/99]
 gi|260546874|ref|ZP_05822613.1| bacterial methyltransferase [Brucella abortus NCTC 8038]
 gi|260565332|ref|ZP_05835816.1| bacterial methyltransferase [Brucella melitensis bv. 1 str. 16M]
 gi|260566056|ref|ZP_05836526.1| bacterial methyltransferase [Brucella suis bv. 4 str. 40]
 gi|260758381|ref|ZP_05870729.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           abortus bv. 4 str. 292]
 gi|260762207|ref|ZP_05874550.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|261214424|ref|ZP_05928705.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           abortus bv. 3 str. Tulya]
 gi|261222582|ref|ZP_05936863.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           ceti B1/94]
 gi|261315615|ref|ZP_05954812.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           pinnipedialis M163/99/10]
 gi|261318052|ref|ZP_05957249.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           pinnipedialis B2/94]
 gi|261752731|ref|ZP_05996440.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           suis bv. 5 str. 513]
 gi|261755390|ref|ZP_05999099.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           suis bv. 3 str. 686]
 gi|261758618|ref|ZP_06002327.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           sp. F5/99]
 gi|265989084|ref|ZP_06101641.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           pinnipedialis M292/94/1]
 gi|265991497|ref|ZP_06104054.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|265998547|ref|ZP_06111104.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           ceti M490/95/1]
 gi|54037823|sp|P65428|RSMH_BRUSU RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|54041486|sp|P65427|RSMH_BRUME RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|68565395|sp|Q57C70|RSMH_BRUAB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|88909188|sp|Q2YM63|RSMH_BRUA2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263445807|sp|A9M698|RSMH_BRUC2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263445814|sp|B2S6R2|RSMH_BRUA1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263447062|sp|C0RE78|RSMH_BRUMB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|17982491|gb|AAL51752.1| sam-dependent methytransferase [Brucella melitensis bv. 1 str. 16M]
 gi|23348287|gb|AAN30352.1| conserved hypothetical protein TIGR00006 [Brucella suis 1330]
 gi|62196464|gb|AAX74764.1| conserved hypothetical protein TIGR00006 [Brucella abortus bv. 1
           str. 9-941]
 gi|82616357|emb|CAJ11414.1| Bacterial methyltransferase [Brucella melitensis biovar Abortus
           2308]
 gi|161336198|gb|ABX62503.1| S-adenosyl-methyltransferase MraW [Brucella canis ATCC 23365]
 gi|189020137|gb|ACD72859.1| Bacterial methyltransferase [Brucella abortus S19]
 gi|225641286|gb|ACO01200.1| S-adenosyl-methyltransferase MraW [Brucella melitensis ATCC 23457]
 gi|256000018|gb|ACU48417.1| S-adenosyl-methyltransferase [Brucella microti CCM 4915]
 gi|260095924|gb|EEW79801.1| bacterial methyltransferase [Brucella abortus NCTC 8038]
 gi|260151400|gb|EEW86494.1| bacterial methyltransferase [Brucella melitensis bv. 1 str. 16M]
 gi|260155574|gb|EEW90654.1| bacterial methyltransferase [Brucella suis bv. 4 str. 40]
 gi|260668699|gb|EEX55639.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           abortus bv. 4 str. 292]
 gi|260672639|gb|EEX59460.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|260916031|gb|EEX82892.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           abortus bv. 3 str. Tulya]
 gi|260921166|gb|EEX87819.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           ceti B1/94]
 gi|261297275|gb|EEY00772.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           pinnipedialis B2/94]
 gi|261304641|gb|EEY08138.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           pinnipedialis M163/99/10]
 gi|261738602|gb|EEY26598.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           sp. F5/99]
 gi|261742484|gb|EEY30410.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           suis bv. 5 str. 513]
 gi|261745143|gb|EEY33069.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           suis bv. 3 str. 686]
 gi|262553171|gb|EEZ09005.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           ceti M490/95/1]
 gi|263002281|gb|EEZ14856.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|263093648|gb|EEZ17653.1| bacterial methyltransferase [Brucella melitensis bv. 2 str. 63/9]
 gi|264661281|gb|EEZ31542.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           pinnipedialis M292/94/1]
          Length = 346

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 167/326 (51%), Positives = 217/326 (66%), Gaps = 6/326 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           HVPVL+ +VI  L PAPG VI+D TFGAGGY+R   + G++VIA+DRDP A+  G+   +
Sbjct: 18  HVPVLIAEVIDALKPAPGAVIVDGTFGAGGYTRRILETGADVIAIDRDPTAIEAGRAMEK 77

Query: 80  DYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++  + +L ++ FS L + V         VDGVV D+GVSSMQID  +RGFSFQK GPLD
Sbjct: 78  EFPGRLNLVESRFSALDEAVARMSGAGKKVDGVVLDIGVSSMQIDEAERGFSFQKDGPLD 137

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRMS  G SA+D VN+    DL RI   LGEE+ A RIA  I KRR + PF  T DL++ 
Sbjct: 138 MRMSSRGPSAADAVNRLKTGDLARIFNFLGEERHAGRIARMIEKRRAAKPFTRTLDLANA 197

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           I+  V  +  +RIHPATR FQALR++VN+E+ ELA+ L +AE+ LK GG L+VV+FHSLE
Sbjct: 198 IETLVGRNPKDRIHPATRVFQALRVYVNDELGELARALLAAERILKPGGRLVVVTFHSLE 257

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           DR+VK+FFA R+G     RHM  ++     F    K  V PT E+   N R+RSAKLRAG
Sbjct: 258 DRMVKRFFADRAGGSAGSRHMPETHMRLPSFTPAVKGAVGPTPEEEERNPRARSAKLRAG 317

Query: 315 MRTVERSIEDD-SFVHLPRLPTLSQF 339
           +RT    +EDD S   LP+LP  ++ 
Sbjct: 318 IRTENPPLEDDLSLFGLPKLPETNEL 343


>gi|254714473|ref|ZP_05176284.1| S-adenosyl-methyltransferase MraW [Brucella ceti M644/93/1]
 gi|254717371|ref|ZP_05179182.1| S-adenosyl-methyltransferase MraW [Brucella ceti M13/05/1]
 gi|261219203|ref|ZP_05933484.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           ceti M13/05/1]
 gi|261322263|ref|ZP_05961460.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           ceti M644/93/1]
 gi|260924292|gb|EEX90860.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           ceti M13/05/1]
 gi|261294953|gb|EEX98449.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           ceti M644/93/1]
          Length = 346

 Score =  386 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 167/326 (51%), Positives = 217/326 (66%), Gaps = 6/326 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           HVPVL+ +VI  L PAPG VI+D TFGAGGY+R   + G++VIA+DRDP A+  G+   +
Sbjct: 18  HVPVLIAEVIDALKPAPGAVIVDGTFGAGGYTRRILETGADVIAIDRDPTAIEAGRAMEK 77

Query: 80  DYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++  + +L ++ FS L + V         VDGVV D+GVSSMQID  +RGFSFQK GPLD
Sbjct: 78  EFPGRLNLVESRFSALDEAVARMSGAGKKVDGVVLDIGVSSMQIDEAERGFSFQKDGPLD 137

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRMS  G SA+D VN+    DL RI   LGEE+ A RIA  I KRR + PF  T DL++ 
Sbjct: 138 MRMSSRGPSAADAVNRLKTGDLARIFNFLGEERHAGRIARMIEKRRAAKPFTRTLDLTNA 197

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           I+  V  +  +RIHPATR FQALR++VN+E+ ELA+ L +AE+ LK GG L+VV+FHSLE
Sbjct: 198 IETLVGRNPKDRIHPATRVFQALRVYVNDELGELARALLAAERILKPGGRLVVVTFHSLE 257

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           DR+VK+FFA R+G     RHM  ++     F    K  V PT E+   N R+RSAKLRAG
Sbjct: 258 DRMVKRFFADRAGGSAGSRHMPETHMRLPSFTPAVKGAVGPTPEEEERNPRARSAKLRAG 317

Query: 315 MRTVERSIEDD-SFVHLPRLPTLSQF 339
           +RT    +EDD S   LP+LP  ++ 
Sbjct: 318 IRTENPPLEDDLSLFGLPKLPETNEL 343


>gi|73748191|ref|YP_307430.1| S-adenosyl-methyltransferase MraW [Dehalococcoides sp. CBDB1]
 gi|147668966|ref|YP_001213784.1| S-adenosyl-methyltransferase MraW [Dehalococcoides sp. BAV1]
 gi|289432241|ref|YP_003462114.1| S-adenosyl-methyltransferase MraW [Dehalococcoides sp. GT]
 gi|88909198|sp|Q3ZZA4|RSMH_DEHSC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446194|sp|A5FSB7|RSMH_DEHSB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|73659907|emb|CAI82514.1| S-adenosyl-methyltransferase MraW [Dehalococcoides sp. CBDB1]
 gi|146269914|gb|ABQ16906.1| S-adenosyl-methyltransferase MraW [Dehalococcoides sp. BAV1]
 gi|288945961|gb|ADC73658.1| S-adenosyl-methyltransferase MraW [Dehalococcoides sp. GT]
          Length = 349

 Score =  386 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 123/329 (37%), Positives = 190/329 (57%), Gaps = 19/329 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
            H+PV+LE+ I  L   PG   +D T GAGG+S +  +    G  ++++D DP A++   
Sbjct: 5   PHIPVMLEESIQGLGVIPGGRYVDCTLGAGGHSEAILEHSYPGGQLLSIDADPSAITLAA 64

Query: 76  ETMRDYKEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E ++ +     L    F+ L+D         V G++FDLG+SSMQ+D  + GFSFQ   P
Sbjct: 65  ERLKSFGSSVLLVNDNFANLKDICQRYEYMPVHGILFDLGLSSMQLDRQESGFSFQTEAP 124

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMR S    ++A+D++N  +V +L+ ++   GEE  + RIA AI ++R   PF+TT +L
Sbjct: 125 LDMRFSPEQELTAADIINGYDVTELSDLIWKYGEEPFSRRIARAIAEKR---PFKTTTEL 181

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           ++ I++ V   ++ RIHPATR+FQALRI VN E+  L   L  A   L  GG L+V+S+H
Sbjct: 182 AAAIERAV-GGRHGRIHPATRTFQALRIAVNEELSHLESALSQAHSLLGHGGRLVVISYH 240

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK++F   +   +    +      H    + I ++V+ P+ E+++ N RSRSAK
Sbjct: 241 SLEDRIVKQYFQKEAKGCICPDDIPQCVCDHQPSLRIINRRVITPSDEEISRNPRSRSAK 300

Query: 311 LRAGMRTVER-------SIEDDSFVHLPR 332
           +R   R +E        S ED+   H+ R
Sbjct: 301 MRVAERIIEPGEGRFFSSREDELVNHVSR 329


>gi|288904625|ref|YP_003429846.1| S-adenosyl-dependent methyltransferase MraW [Streptococcus
           gallolyticus UCN34]
 gi|288731350|emb|CBI12901.1| S-adenosyl-dependent methyltransferase MraW [Streptococcus
           gallolyticus UCN34]
          Length = 316

 Score =  386 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 112/321 (34%), Positives = 174/321 (54%), Gaps = 17/321 (5%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           M++  H     H+ VLL + + +L+  P  V +DAT G  G+S           ++ A D
Sbjct: 1   MTTDFH-----HITVLLHETVDMLDIKPDGVYVDATLGGAGHSEYLLSKLGPTGHLYAFD 55

Query: 66  RDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120
           +D  A+   Q  ++DY  K Q +  +  F  L   +   GV   DG+++DLGVSS Q+D 
Sbjct: 56  QDQTAIDNAQIRLKDYIEKGQVTFIKDNFRNLASNLASHGVTEIDGILYDLGVSSPQLDE 115

Query: 121 GDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS++K  PLDMRM+    +SA DVVN  +  DL RI    GE+K + +IA  I + 
Sbjct: 116 RERGFSYKKDAPLDMRMNRDQDLSAYDVVNTYDYHDLVRIFFKYGEDKFSKQIARKIEQA 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R+  P +TT +L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A + 
Sbjct: 176 RKVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIEL 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297
           L   G + V++FHSLEDRL K+ F   S   V      IP +  P     + +K ++P++
Sbjct: 236 LAVDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPEDMQPK-LALVNRKPILPSE 294

Query: 298 EDVAFNRRSRSAKLRAGMRTV 318
           E++  N RS SAKLR   +  
Sbjct: 295 EELEVNNRSHSAKLRVARKVR 315


>gi|157692188|ref|YP_001486650.1| S-adenosyl-methyltransferase MraW [Bacillus pumilus SAFR-032]
 gi|263446003|sp|A8FCX3|RSMH_BACP2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|157680946|gb|ABV62090.1| S-adenosyl-methyltransferase [Bacillus pumilus SAFR-032]
          Length = 310

 Score =  386 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 107/309 (34%), Positives = 166/309 (53%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSC 73
           +  H  VLL++ +  LN       +D T G  G+S       S    +I  D+D  A+  
Sbjct: 1   MFQHETVLLKETVDGLNVKEDGTYVDCTLGGAGHSSYLLSQLSEKGTLIGFDQDDAALDH 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E +   K      ++ F  L++ + ++G   VDGV+FDLGVSS Q+D  +RGFS+   
Sbjct: 61  AREKLAGSKANILFIKSNFRYLKERLNEQGITSVDGVIFDLGVSSPQLDTPERGFSYHHD 120

Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM  S  +SA  VVN+   +DL RI    GEEK + +IA  I + R+ AP +TT 
Sbjct: 121 APLDMRMDQSAALSAKKVVNEWPFEDLVRIFYKYGEEKFSKQIARKIEEARKKAPIETTG 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I++ +   ++    HPA R FQA+RI VN+E++   + L  A + L   G + V+
Sbjct: 181 ELVDIIKEGIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALEQAIELLNPKGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F   S    +     +         + IT+K +V +++++  N R+R
Sbjct: 241 TFHSLEDRICKSTFREMSSLPELPHGLPVIPEGLEPKLKLITRKPIVASEQELEHNNRAR 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRIAEK 309


>gi|167751501|ref|ZP_02423628.1| hypothetical protein EUBSIR_02502 [Eubacterium siraeum DSM 15702]
 gi|167655309|gb|EDR99438.1| hypothetical protein EUBSIR_02502 [Eubacterium siraeum DSM 15702]
          Length = 308

 Score =  386 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 116/303 (38%), Positives = 174/303 (57%), Gaps = 8/303 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77
           H+PVLL + I  L+  P  + +D T G  G+S    K      +I  DRDP AV   +E 
Sbjct: 7   HIPVLLSETIESLDIKPDGIYVDCTTGFAGHSSEIAKRLTTGRLIGFDRDPDAVKAAEEK 66

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++DY    +L    FS   + + + GV   DGV+ DLGVSS Q+D  +RGFS+ +  PLD
Sbjct: 67  LKDYPH--TLINRKFSTFDESLDEIGVGKVDGVLMDLGVSSYQLDTAERGFSYHEDAPLD 124

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRMS SG+SA DVVN+ + + L +IL   GEEK A  I   I+K R++AP +TT +L+ +
Sbjct: 125 MRMSKSGLSAYDVVNEYSKEQLEKILFEYGEEKFAHGIVSGILKARETAPIKTTLELAEI 184

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           +++ V        +P  ++FQA+RI VN E++EL +G+  A + L  GG L +++FHS+E
Sbjct: 185 VKRNVPLKVRKEKNPCKKTFQAIRIEVNGELDELKKGMSEAFERLSQGGRLAIITFHSIE 244

Query: 255 DRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           DR+VK  F              +         +++ +K V  ++E++A N RSRSAKLR 
Sbjct: 245 DRIVKNTFREYCTGCTCPPDFPVCVCGKKPRGRTVYRKPVTASEEELAVNNRSRSAKLRV 304

Query: 314 GMR 316
             +
Sbjct: 305 IEK 307


>gi|306832860|ref|ZP_07465994.1| S-adenosyl-methyltransferase MraW [Streptococcus bovis ATCC 700338]
 gi|304424999|gb|EFM28131.1| S-adenosyl-methyltransferase MraW [Streptococcus bovis ATCC 700338]
          Length = 338

 Score =  386 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 111/324 (34%), Positives = 173/324 (53%), Gaps = 17/324 (5%)

Query: 6   CKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVI 62
            K M++  H     H+ VLL + + +L+  P  + +DAT G  G+S           ++ 
Sbjct: 20  MKGMTTDFH-----HITVLLHETVDMLDIKPDGIYVDATLGGAGHSEYLLSKLGPTGHLY 74

Query: 63  ALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQ 117
           A D+D  A+   Q  ++DY  K Q +  +  F  L   +   GV   DG+++DLGVSS Q
Sbjct: 75  AFDQDQTAIDNAQIRLKDYIEKGQVTFIKDNFRNLVSNLAMHGVTEIDGILYDLGVSSPQ 134

Query: 118 IDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
           +D  +RGFS++K   LDMRM+    +SA DVVN  +  DL RI    GE+K + +IA  I
Sbjct: 135 LDERERGFSYKKDASLDMRMNRDQDLSAYDVVNTYDYHDLVRIFFKYGEDKFSKQIARKI 194

Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
            + R   P +TT +L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A
Sbjct: 195 EQARTVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQA 254

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVV 294
            + L   G + V++FHSLEDRL K+ F   S   V      IP +  P     + +K ++
Sbjct: 255 IELLAVDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPEDMQPK-LTLVNRKPIL 313

Query: 295 PTQEDVAFNRRSRSAKLRAGMRTV 318
           P++E++  N RS SAKLR   +  
Sbjct: 314 PSEEELEVNNRSHSAKLRVARKVR 337


>gi|172057976|ref|YP_001814436.1| S-adenosyl-methyltransferase MraW [Exiguobacterium sibiricum
           255-15]
 gi|263447041|sp|B1YIU3|RSMH_EXIS2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|171990497|gb|ACB61419.1| S-adenosyl-methyltransferase MraW [Exiguobacterium sibiricum
           255-15]
          Length = 312

 Score =  386 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 116/312 (37%), Positives = 176/312 (56%), Gaps = 10/312 (3%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74
           + +H  VL  + I  LN  P  + +D T G  G+S    K     ++ A D+D  A++  
Sbjct: 1   MFEHETVLKWESIKGLNIKPDGIYVDCTLGGAGHSEEIVKQLTTGHLYAFDQDDVALAHA 60

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            E +  Y+ +F+L ++ F  L++ +  +    VDG++FDLGVSS Q+D G+RGFS+    
Sbjct: 61  AERLAAYEGRFTLIKSNFVHLKEELEARSVTKVDGILFDLGVSSPQLDEGERGFSYNFDA 120

Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM  +  +SA +VVN+    DL RIL   GEEK + +IA  I K R+ AP +TT +
Sbjct: 121 RLDMRMDQTSPLSAYEVVNEWPYNDLVRILFTYGEEKFSKQIARKIEKAREIAPIETTFE 180

Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  LI+  +   ++    HPA R+FQA+RI VN+E+    + +  A   L  GG L V++
Sbjct: 181 LVELIKDAIPAPARRKGGHPAKRTFQAIRIAVNDELNVFDRAVYQAIDLLAVGGRLCVIT 240

Query: 250 FHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           FHSLEDR+ K+ F  +S   ++     MIP    P   + +T+K +    +++  NRRSR
Sbjct: 241 FHSLEDRMCKQAFKEKSSLPELPQGLPMIPKEFEP-ELRLVTRKPITAGDDELDDNRRSR 299

Query: 308 SAKLRAGMRTVE 319
           SAKLR   +  E
Sbjct: 300 SAKLRIVEKMKE 311


>gi|256061496|ref|ZP_05451640.1| S-adenosyl-methyltransferase MraW [Brucella neotomae 5K33]
 gi|261325503|ref|ZP_05964700.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           neotomae 5K33]
 gi|261301483|gb|EEY04980.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           neotomae 5K33]
          Length = 346

 Score =  386 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 167/326 (51%), Positives = 216/326 (66%), Gaps = 6/326 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           HVPVL+ +VI  L PAPG VI+D TFGAGGY+R   + G++VIA+DRDP A+  G+   +
Sbjct: 18  HVPVLIAEVIDALKPAPGAVIVDGTFGAGGYTRRILETGADVIAIDRDPTAIEAGRAMEK 77

Query: 80  DYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++  +  L ++ FS L + V         VDGVV D+GVSSMQID  +RGFSFQK GPLD
Sbjct: 78  EFPGRLILVESRFSALDEAVARMSGAGKKVDGVVLDIGVSSMQIDEAERGFSFQKDGPLD 137

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRMS  G SA+D VN+    DL RI   LGEE+ A RIA  I KRR + PF  T DL++ 
Sbjct: 138 MRMSSRGPSAADAVNRLKTGDLARIFNFLGEERHAGRIARMIEKRRAAKPFTRTLDLANA 197

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           I+  V  +  +RIHPATR FQALR++VN+E+ ELA+ L +AE+ LK GG L+VV+FHSLE
Sbjct: 198 IETLVGRNPKDRIHPATRVFQALRVYVNDELGELARALLAAERILKPGGRLVVVTFHSLE 257

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           DR+VK+FFA R+G     RHM  ++     F    K  V PT E+   N R+RSAKLRAG
Sbjct: 258 DRMVKRFFADRAGGSAGSRHMPETHMRLPSFTPAVKGAVGPTPEEEERNPRARSAKLRAG 317

Query: 315 MRTVERSIEDD-SFVHLPRLPTLSQF 339
           +RT    +EDD S   LP+LP  ++ 
Sbjct: 318 IRTENPPLEDDLSLFGLPKLPETNEL 343


>gi|317495032|ref|ZP_07953404.1| MraW methylase [Gemella moribillum M424]
 gi|316914804|gb|EFV36278.1| MraW methylase [Gemella moribillum M424]
          Length = 312

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 110/307 (35%), Positives = 169/307 (55%), Gaps = 8/307 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74
           +  H  VLL + +A LN     V +D T G  G+S    K      + A D+D  A+   
Sbjct: 1   MFKHYSVLLNEAVAGLNIKENGVYVDCTLGGAGHSLEILKQLTDGKLYAFDQDSVALENA 60

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           ++ ++DY ++    ++ F  L++ + + GV   DGV++DLGVSS Q+D  +RGFS+    
Sbjct: 61  KDKLKDYADKVVFIKSNFKNLREKLLEHGVTEVDGVLYDLGVSSPQLDTPERGFSYNYDT 120

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM     ISA ++VN+ +  +L +I    GEEK + +IA  + K+R   P +TT +
Sbjct: 121 RLDMRMDTDAKISAYEIVNEYDYNELVKIFYRYGEEKFSKQIARNVEKKRLEKPIETTFE 180

Query: 191 LSSLIQKTVYFSKNN-RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I++++  +K     HPA R FQA+RI VNNE+      L  A   +K  G + V++
Sbjct: 181 LVDIIKESIPAAKRRTGGHPAKRVFQAIRIAVNNELSVFEDSLEQAIDIVKKDGRISVIT 240

Query: 250 FHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+ K+ F S +  K +     I      A  + IT+K + PT +++  N RSRS
Sbjct: 241 FHSLEDRICKQIFNSYAKRKEIPKNLPILPEESLAKLKIITRKPIYPTDKELEENNRSRS 300

Query: 309 AKLRAGM 315
           AKLR   
Sbjct: 301 AKLRIAE 307


>gi|86749109|ref|YP_485605.1| methyltransferase [Rhodopseudomonas palustris HaA2]
 gi|123292796|sp|Q2IYL6|RSMH_RHOP2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|86572137|gb|ABD06694.1| methyltransferase [Rhodopseudomonas palustris HaA2]
          Length = 337

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 145/332 (43%), Positives = 198/332 (59%), Gaps = 5/332 (1%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAV 71
           +      H+PVL  + + LL P  G + LD TFGAGGYSR   +  +  VIA+DRD  A+
Sbjct: 1   MSEARPRHIPVLGPEAVTLLAPRDGGIYLDGTFGAGGYSRLILEAAATRVIAIDRDRSAI 60

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQ 128
           + G + ++    + +L +  FS L +    +G   VDGVV D+GVSSMQ+D  DRGFSF+
Sbjct: 61  AGGFDLVQGAGGRLTLVEDRFSNLAEVCAAQGAPAVDGVVMDIGVSSMQVDQADRGFSFR 120

Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           + GPLDMRM   G +A+DVV +A+  DL  I+ I GEEK +  +A A++  R+ AP  TT
Sbjct: 121 QDGPLDMRMGTDGPTAADVVARASETDLANIIYIFGEEKFSRHVARAVIAARKEAPITTT 180

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           + L+ ++   V  +K  +IHPATR+FQALRIFVN E++EL Q L +AE+ LK GG L VV
Sbjct: 181 KALADIVASVV-RAKPGQIHPATRTFQALRIFVNEELDELYQALAAAERVLKPGGRLAVV 239

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           +FHSLEDR+VK F A RS      RH+         F  +TK+       +VA N R+RS
Sbjct: 240 TFHSLEDRIVKTFLAERSRVGGGSRHLPELAQAAPSFTVLTKRPTTAGDAEVAANPRARS 299

Query: 309 AKLRAGMRTVERSIEDDSFVHLPRLPTLSQFR 340
           AKLR G RT   +   D     P L  + +  
Sbjct: 300 AKLRGGERTAAPAHRPDDLPGWPTLAGVMKAG 331


>gi|57234909|ref|YP_181088.1| S-adenosyl-methyltransferase MraW [Dehalococcoides ethenogenes 195]
 gi|88909197|sp|Q3Z9L1|RSMH_DEHE1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|57225357|gb|AAW40414.1| S-adenosyl-methyltransferase MraW [Dehalococcoides ethenogenes 195]
          Length = 349

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 121/313 (38%), Positives = 186/313 (59%), Gaps = 12/313 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72
           T   H+PV+LE+ I  L   PG   +D T GAGG+S +  +    G  ++++D DP A++
Sbjct: 2   TEYPHIPVMLEESIQGLGVIPGGRYVDCTLGAGGHSEAILEHSYPGGQLLSIDADPKAIA 61

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
              E ++ +     L    F+ L+D         V G++FDLG+SSMQ+D  + GFSFQ 
Sbjct: 62  LAAERLKCFGSSVLLVNDNFANLKDICQRYEYMPVHGILFDLGLSSMQLDREESGFSFQT 121

Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMR S    +SA+D+VN  ++  L+ ++   GEE  + RIA AI+++R   PF+TT
Sbjct: 122 EAPLDMRFSPGQELSAADIVNTYDLAGLSDLIWKYGEEPFSRRIARAILEKR---PFKTT 178

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+S+I+K V   ++ RIHPATR+FQALRI VN E+  L   L  A+  L  GG L+V+
Sbjct: 179 TELASVIEKAV-GGRHGRIHPATRTFQALRIAVNEELSHLESALAQAQSLLGHGGRLVVI 237

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           S+HSLEDR+VK++F   +   +    +      H    + I ++V+ P+ E+++ N RSR
Sbjct: 238 SYHSLEDRIVKQYFQKEAKGCICPDDIPQCVCNHKPSLRLINRRVITPSDEEISRNPRSR 297

Query: 308 SAKLRAGMRTVER 320
           SAK+R   R ++ 
Sbjct: 298 SAKMRVAERIIQP 310


>gi|313637016|gb|EFS02589.1| S-adenosyl-methyltransferase MraW [Listeria seeligeri FSL S4-171]
          Length = 312

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 102/311 (32%), Positives = 173/311 (55%), Gaps = 9/311 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H  VLL + + +L   P  + +DAT G  G+S           ++ A D+D  A+  
Sbjct: 1   MFKHETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +  +  Y ++ +  ++ F  +++ + + G   VDG+++DLGVSS Q+D  +RGFS+ + 
Sbjct: 61  AKIKLAAYSDKVTFVKSNFRYMKEALNEHGISEVDGILYDLGVSSPQLDERERGFSYHQD 120

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM     ++A  VVN+ + +DL RI    GEEK + +IA  I +RR+  P +TT 
Sbjct: 121 AALDMRMDREQELTAKIVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTG 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I+  +   ++    HP  R+FQA+RI VN+E+  +   L  A   +K GG + V+
Sbjct: 181 ELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLIKPGGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F   + G  +     +  + +   F+  T+K +VP++E++  N R+R
Sbjct: 241 TFHSLEDRITKHLFQEATKGPDLPPGLPVIPDEYKPDFKLATRKPIVPSEEELEQNNRAR 300

Query: 308 SAKLRAGMRTV 318
           SAKLR   + +
Sbjct: 301 SAKLRVIEKII 311


>gi|169334628|ref|ZP_02861821.1| hypothetical protein ANASTE_01031 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259345|gb|EDS73311.1| hypothetical protein ANASTE_01031 [Anaerofustis stercorihominis DSM
           17244]
          Length = 308

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 111/306 (36%), Positives = 170/306 (55%), Gaps = 8/306 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
            H+ VL ++ I +LN     + +D T G  G+S   CK  S     I +D+D F     +
Sbjct: 2   KHISVLYQETIDMLNIKEDGIYVDGTMGGAGHSLGICKKLSEEGIFIGIDQDDFVFDRAK 61

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +     +    +  F  +++ + D G+D   G++ DLGVSS QID   RGFSF+K GP
Sbjct: 62  VRLESTDCKKEFVKGNFHDIKEILMDLGIDKIDGMMADLGVSSFQIDDETRGFSFKKDGP 121

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S   SA ++VN  + +DL R++   GEE+ A  IA  I+K R+  P +TT +L
Sbjct: 122 LDMRMDKSKSFSAKELVNTYSYEDLRRVISEYGEEQFAGNIAKHILKNREEKPIETTYEL 181

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             +I+  +    +   HPA ++FQA+RI VN+EI+ L Q +      L  GG L V++FH
Sbjct: 182 VEIIKNAIPKKFHQMKHPAKKTFQAIRIEVNDEIDALKQSVEDMIDVLDKGGRLAVITFH 241

Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VKK F+  +      +   +    +    + +T+K ++PT+E++  N RSRSAK
Sbjct: 242 SLEDRIVKKVFSEYAKGCTCPKEFPVCVCGNTPKVKVLTRKPLLPTEEEIEANPRSRSAK 301

Query: 311 LRAGMR 316
           LR   +
Sbjct: 302 LRVIEK 307


>gi|289435382|ref|YP_003465254.1| S-adenosyl-methyltransferase [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289171626|emb|CBH28172.1| S-adenosyl-methyltransferase [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 312

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 102/311 (32%), Positives = 174/311 (55%), Gaps = 9/311 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H  VLL + + +L   P  + +DAT G  G+S           ++ A D+D  A+  
Sbjct: 1   MFKHETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +  +  Y ++ +  ++ F  +++ + ++G   VDG+++DLGVSS Q+D  +RGFS+ + 
Sbjct: 61  AKIKLAAYSDKVTFVKSNFRYMKEALNERGISEVDGILYDLGVSSPQLDERERGFSYHQD 120

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM     ++A  VVN+ + +DL RI    GEEK + +IA  I +RR+  P +TT 
Sbjct: 121 AALDMRMDREQELTAKIVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTG 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I+  +   ++    HP  R+FQA+RI VN+E+  +   L  A   +K GG + V+
Sbjct: 181 ELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALSLIKPGGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F   + G  +     +  + +   F+  T+K +VP++E++  N R+R
Sbjct: 241 TFHSLEDRITKHLFQEATKGPDLPPGLPVIPDEYKPDFKLATRKPIVPSEEELEQNNRAR 300

Query: 308 SAKLRAGMRTV 318
           SAKLR   + +
Sbjct: 301 SAKLRVIEKII 311


>gi|254512159|ref|ZP_05124226.1| S-adenosyl-methyltransferase MraW [Rhodobacteraceae bacterium
           KLH11]
 gi|221535870|gb|EEE38858.1| S-adenosyl-methyltransferase MraW [Rhodobacteraceae bacterium
           KLH11]
          Length = 330

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 151/333 (45%), Positives = 202/333 (60%), Gaps = 6/333 (1%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRD 67
           M+ A   +   H+PVLL  ++A + P    V LD TFGAGGY+R   + G+  VI +DRD
Sbjct: 1   MAGAQTSSDKPHIPVLLRPLLAAVAPVS-GVWLDGTFGAGGYTRGLLEAGAEKVIGVDRD 59

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
           P A     +    Y ++  + Q  FS + +Y  D  +DGVV DLGVSSMQ+D  +RGFSF
Sbjct: 60  PLAFEMAADWAGGYGDRLVMQQGVFSCMDEYARD--LDGVVLDLGVSSMQLDQAERGFSF 117

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
            K GPLDMRMS  G SA+D+VN+A    L  IL   GEE+ + RIA AIV+ R   P  T
Sbjct: 118 MKDGPLDMRMSQQGDSAADLVNEATEAQLADILFHYGEERASRRIARAIVRARAEDPITT 177

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T  L+ +I+  +   K  + HPATRSFQ LRI VN E EEL QGL +AE+ALK GG L V
Sbjct: 178 TLRLAEIIESCLPRPKPGQSHPATRSFQGLRIAVNAEYEELFQGLMAAERALKPGGQLAV 237

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRS 306
           V+FHS+EDR+VK+FF SR+GK        P  A     F   T+K V P  +++  N R+
Sbjct: 238 VTFHSIEDRMVKRFFQSRAGKTGRANRYAPEMAQEQPQFTLKTRKAVGPDDQELEENPRA 297

Query: 307 RSAKLRAGMRTVERSIEDDSF-VHLPRLPTLSQ 338
           RSAKLR  +RT   + E ++  + +P+L  + +
Sbjct: 298 RSAKLRVAVRTDAPAGEIEARAIGMPQLGGMGR 330


>gi|259501653|ref|ZP_05744555.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Lactobacillus iners DSM 13335]
 gi|302191140|ref|ZP_07267394.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners AB-1]
 gi|259166938|gb|EEW51433.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Lactobacillus iners DSM 13335]
          Length = 315

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 111/311 (35%), Positives = 171/311 (54%), Gaps = 13/311 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76
            H  VLL + I  LN     V +DATFG GG++    K     ++I  D+D +A+   ++
Sbjct: 4   KHYSVLLHETIDNLNLKNDGVYVDATFGGGGHASYLLKQLSNGHLIGFDQDEYAIELAKK 63

Query: 77  TM-----RDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSF 127
           +       + K + SL    F  LQ  +       G+DG+ +DLGVSS Q D  +RGFS+
Sbjct: 64  SFSEVLKANSKPKLSLVHDNFGNLQQNLAKLGFIDGIDGIYYDLGVSSPQFDQPERGFSY 123

Query: 128 QKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           + +  LDMRM  +  + A  +VN  + K+L+ IL   G+EK A +IA  IV +R   P  
Sbjct: 124 RFNARLDMRMDQTKDLDAYKIVNTWSQKELSNILFKYGDEKYARQIAKNIVAKRAIKPIT 183

Query: 187 TTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           TT +L  +I++ +  F++    HPA +SFQA+RI VN+E+E L + L  A + LK GG +
Sbjct: 184 TTFELVDIIKEAIPAFARRTGGHPAKKSFQAIRIAVNDELEVLEKSLLDAIEILKPGGRI 243

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
            V++F SLED++VKK F   S   +        ++     + I++K +V T +++  N R
Sbjct: 244 CVITFQSLEDKIVKKIFKKYSDVDIPRGMPQIPDSLKPTLKIISRKPIVATDKELEENNR 303

Query: 306 SRSAKLRAGMR 316
           S SAKLR   +
Sbjct: 304 SHSAKLRVAEK 314


>gi|302389508|ref|YP_003825329.1| S-adenosyl-methyltransferase MraW [Thermosediminibacter oceani DSM
           16646]
 gi|302200136|gb|ADL07706.1| S-adenosyl-methyltransferase MraW [Thermosediminibacter oceani DSM
           16646]
          Length = 313

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 121/306 (39%), Positives = 173/306 (56%), Gaps = 10/306 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H PVLLE+ I LL+P PG V +DAT G GG+     K       VI +DRD  AV   +E
Sbjct: 5   HKPVLLEETINLLDPKPGGVYVDATLGGGGHFSEILKRVGENGTVIGIDRDEDAVVNARE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                    ++    F  ++     +  +GVDGV+FDLGVSS Q+D   RGFS+ K  PL
Sbjct: 65  RFSQSPA-ATIVHDNFKNIKRIVYSLGLEGVDGVIFDLGVSSYQLDEESRGFSYIKDAPL 123

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  +  ++A DVVN+    +L +I+   GEE+ A RIA  I ++R+  P +TT +L 
Sbjct: 124 DMRMDRNQDLTAKDVVNKMTKSELAKIIKEYGEERWADRIAEFICEKRKKKPIETTGELV 183

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  +    +    HPA R+FQALRI+VN E+E L+  L+ A   L  GG + V++FH
Sbjct: 184 EIIKAAIPARARRGGPHPAKRTFQALRIYVNGELEILSASLKDAVDILNPGGRICVITFH 243

Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK  F   +      +   + +       + +T K V PTQ+++  N R+RSAK
Sbjct: 244 SLEDRIVKHTFRELAKGCTCPKDSPLCTCKSERALKILTPKPVCPTQDEIDANPRARSAK 303

Query: 311 LRAGMR 316
           LRA  +
Sbjct: 304 LRACEK 309


>gi|118590900|ref|ZP_01548300.1| S-adenosyl-methyltransferase MraW [Stappia aggregata IAM 12614]
 gi|118436422|gb|EAV43063.1| S-adenosyl-methyltransferase MraW [Stappia aggregata IAM 12614]
          Length = 346

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 162/327 (49%), Positives = 223/327 (68%), Gaps = 7/327 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           HVPVLL++V+  L P PG VI+D TFGAGGYSR+  ++G+ V+ +DRDP A++ GQE ++
Sbjct: 19  HVPVLLKEVLEWLAPQPGDVIVDGTFGAGGYSRAILELGARVVGIDRDPDAIAGGQELVK 78

Query: 80  DYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
             + +  L    F+ L+ +    G   VDGVV DLGVSSMQ+D  +RGFSF + GPLDMR
Sbjct: 79  ASEGRLMLVPGQFADLETHARSCGFEGVDGVVLDLGVSSMQLDEAERGFSFLRDGPLDMR 138

Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
           M  +G SA+DVVN+  VKDL R++G+LGEEK+A+ +AHAI K R+  PF  T +L++LI+
Sbjct: 139 MEQAGPSAADVVNELPVKDLIRVIGLLGEEKRATTVAHAIDKARKEKPFTRTLELANLIE 198

Query: 197 KTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           K +    K  +IHPATR+FQALRI+VN E+ + A+ L +AE+ LK GG L++VSFHSLED
Sbjct: 199 KVLGRSPKKAQIHPATRTFQALRIYVNGELHQAAEALGAAERILKPGGRLVLVSFHSLED 258

Query: 256 RLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           R+VK+FF  R+  +    RHM   +  PA F+ +T+K V     +   N R+RSAKLRAG
Sbjct: 259 RIVKRFFQDRTRTRGGGSRHMPEEDVPPATFELLTRKAVEAASAETDINPRARSAKLRAG 318

Query: 315 MRTVERSIEDDSFVHLPRLPTLSQFRG 341
            RT   + E D  +H   +P L+ F G
Sbjct: 319 RRTEAEARELD--IHQAGVPRLAAFHG 343


>gi|312622933|ref|YP_004024546.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203400|gb|ADQ46727.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 307

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 128/309 (41%), Positives = 189/309 (61%), Gaps = 10/309 (3%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSC 73
           + +H+PVLLE+ ++ L   P  + +DATFG GG+S+   +  SN   +IA+DRD  A+  
Sbjct: 1   MFEHIPVLLEESVSFLITNPDGIYVDATFGLGGHSKRILEKISNKGFLIAIDRDLEAIEL 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130
           G+  +  YK    +  ++FS++ + +   G+   DG++FD GVSS+Q+D  +RGFS+ K 
Sbjct: 61  GKRKLEAYK-NVKIVHSSFSKVDEVLECLGIEKIDGILFDFGVSSLQLDKQERGFSYNKE 119

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM   S ++A DVVN  + +DL RI+   GEE+ A RIA AIV+RR   P +TT 
Sbjct: 120 AFLDMRMDTTSKLTAYDVVNYYSQEDLERIIREYGEERFARRIAKAIVERRSKKPIETTT 179

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           DLS LI   V   K+   HPA R+FQA+RI VN E+EE+   L  + + LK+GG +  +S
Sbjct: 180 DLSRLISSVVPKPKDGS-HPAQRTFQAIRIEVNRELEEIKIALEKSLRFLKSGGRICAIS 238

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK+FF   S + +  +   +           ITKK + P++E++  N+RS S
Sbjct: 239 FHSLEDRIVKEFFKFHSLECICPKDIPVCRCGKKKELNIITKKPITPSKEEIESNKRSHS 298

Query: 309 AKLRAGMRT 317
           AKLR   + 
Sbjct: 299 AKLRVAEKV 307


>gi|297583942|ref|YP_003699722.1| S-adenosyl-methyltransferase MraW [Bacillus selenitireducens MLS10]
 gi|297142399|gb|ADH99156.1| S-adenosyl-methyltransferase MraW [Bacillus selenitireducens MLS10]
          Length = 317

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 107/309 (34%), Positives = 168/309 (54%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSC 73
           + +H  VL E+ +  L   PG V +D T G GG+S    +       +IA D+D  A++ 
Sbjct: 1   MFEHDTVLREETVEGLAIRPGGVYVDCTLGGGGHSERILQELGEDGKLIAFDQDESAIAH 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E ++ Y ++  + +  F  L++ +   G   VDG++FDLGVSS Q D  +RGFS++  
Sbjct: 61  AKERLKPYGDRLHIVKRNFRFLKEELEKLGYREVDGIIFDLGVSSPQFDVPERGFSYRFD 120

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM   S ++A  V+N+ + +DL +I    GEEK A  IA  I K R++ P +TT 
Sbjct: 121 APLDMRMDQTSELTAHKVINEWSFEDLMKIFSRYGEEKFAKYIARKIEKYRETKPVETTF 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I+  +   ++    HPA R+FQA+RI VN+E+    + L  A      GG + V+
Sbjct: 181 ELVEIIKDAIPAPARRKGGHPAKRTFQAIRIAVNDELGVFEKALEDAVTMTAPGGRIAVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K+ F   S      R   +    +  V + I +K +    +++  N RS 
Sbjct: 241 TFHSLEDRICKQLFRKLSQPPELPRGMPVVPEGYEPVLKLINRKPITANVDELDDNHRSH 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRIAEK 309


>gi|295092968|emb|CBK82059.1| S-adenosyl-methyltransferase MraW [Coprococcus sp. ART55/1]
          Length = 311

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 101/305 (33%), Positives = 171/305 (56%), Gaps = 9/305 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VLLE+ I  LN  P  + +D T G  G+S    K    G  +I +D+D  A++   +
Sbjct: 5   HKSVLLEETIDNLNIKPDGIYVDGTLGGAGHSEQIVKRLGEGGRLIGIDQDEDAIAAASK 64

Query: 77  TMRDYKEQFSLFQAT---FSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  Y ++ ++ +     F ++ D +  + VDG++ DLGVSS Q+D  DRGF+++   PL
Sbjct: 65  RLEPYGDKVTIVRDNYQNFRRILDELNIQKVDGILLDLGVSSYQLDNADRGFTYRVDAPL 124

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM      +A D+VN  +  +L RIL   GEE+ A  IA+ I K R++   +TT++L+
Sbjct: 125 DMRMDNRQTKTAKDIVNDYSEAELFRILKDYGEERYAKSIAYHICKYRENKVIETTEELN 184

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+ ++    +N + HP+ ++FQA+RI +N E++ L   +     +L  GG L +++FH
Sbjct: 185 DIIRGSIPAKARNGQGHPSKQTFQAIRIELNRELDVLRDSIDGMIASLNPGGRLCIITFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK  F       +      + +     + + IT+K ++P + ++  N RS+S+K
Sbjct: 245 SLEDRIVKLAFRKNENPCICPPNFPVCTCGRKPLGKVITRKPIIPGERELEENSRSKSSK 304

Query: 311 LRAGM 315
           LR   
Sbjct: 305 LRVFE 309


>gi|312794111|ref|YP_004027034.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312181251|gb|ADQ41421.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 307

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 126/309 (40%), Positives = 194/309 (62%), Gaps = 10/309 (3%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSC 73
           + +H+PVLLE+ ++ L   P  + +DATFG GG+S+   +  SN   ++A+D+D  A+  
Sbjct: 1   MFEHIPVLLEESVSFLITNPDGIYVDATFGLGGHSKRILEKLSNKGFLVAIDKDLEAIEL 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130
           G+  +  YK    +  ++FS++ + +   G+   DG++FD GVSS+Q+D  +RGFS+ K 
Sbjct: 61  GKRRLEGYK-NIKIVHSSFSKVDEVLESLGIEKIDGILFDFGVSSLQLDKQERGFSYSKE 119

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM   S ++A DV+N  + +DL RI+   GEE+ A RIA AIV+RR++ P +TT 
Sbjct: 120 AFLDMRMDTTSKLTAYDVINFYSQEDLERIIREYGEERFARRIAKAIVERRRNKPIETTT 179

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           +LSSLI   V   K+   HPA R+FQA+RI VN E+EE+   L  + + LK+GG +  +S
Sbjct: 180 ELSSLISSVVPKPKDGS-HPAQRTFQAIRIEVNRELEEIKIALEKSLRFLKSGGRICAIS 238

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK+FF   S + +  +   +         + ITKK +VP++E++  N+RS S
Sbjct: 239 FHSLEDRIVKEFFKFHSLECICPKDIPVCRCGKKKELEIITKKPIVPSKEEIERNKRSHS 298

Query: 309 AKLRAGMRT 317
           AKLR   + 
Sbjct: 299 AKLRVAQKV 307


>gi|294852766|ref|ZP_06793439.1| methylase MraW [Brucella sp. NVSL 07-0026]
 gi|294821355|gb|EFG38354.1| methylase MraW [Brucella sp. NVSL 07-0026]
          Length = 346

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 166/326 (50%), Positives = 215/326 (65%), Gaps = 6/326 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           HVPVL+ +VI  L PAPG VI+D TFGAGGY+R   + G++VIA+DRDP A+  G+   +
Sbjct: 18  HVPVLIAEVIDALKPAPGAVIVDGTFGAGGYTRRILETGADVIAIDRDPTAIEAGRAMEK 77

Query: 80  DYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++  + +L ++ FS L + V         VDGVV D+GVSSMQID  +RGFSFQK GPLD
Sbjct: 78  EFPGRLNLVESRFSALDEAVARMSGAGKKVDGVVLDIGVSSMQIDEAERGFSFQKDGPLD 137

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRMS  G SA+D VN+    DL RI   LGEE+ A RIA  I KRR   PF  T DL++ 
Sbjct: 138 MRMSSRGPSAADAVNRLKTGDLARIFNFLGEERHAGRIARMIEKRRAPKPFTRTLDLANA 197

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           I+  V  +  +RIH ATR FQALR++VN+E+ ELA+ L +AE+ LK GG L+VV+FHSLE
Sbjct: 198 IETLVGRNPKDRIHSATRVFQALRVYVNDELGELARALLAAERILKPGGRLVVVTFHSLE 257

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           DR+VK+FFA R+G     RHM  ++     F    K  V PT E+   N R+RSAKLRAG
Sbjct: 258 DRMVKRFFADRAGGSAGSRHMPETHMRLPSFTPAVKGAVGPTPEEEERNPRARSAKLRAG 317

Query: 315 MRTVERSIEDD-SFVHLPRLPTLSQF 339
           +RT    +EDD S   LP+LP  ++ 
Sbjct: 318 IRTENPPLEDDLSLFGLPKLPETNEL 343


>gi|256113992|ref|ZP_05454775.1| S-adenosyl-methyltransferase MraW [Brucella melitensis bv. 3 str.
           Ether]
 gi|265995335|ref|ZP_06107892.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           melitensis bv. 3 str. Ether]
 gi|262766448|gb|EEZ12237.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           melitensis bv. 3 str. Ether]
          Length = 346

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 167/326 (51%), Positives = 217/326 (66%), Gaps = 6/326 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           HVPVL+ +VI  L PAPG VI+D TFGAGGY+R   + G++VIA+DRDP A+  G+   +
Sbjct: 18  HVPVLIAEVIDALKPAPGAVIVDGTFGAGGYTRRILETGADVIAIDRDPTAIEAGRAMEK 77

Query: 80  DYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++  + +L ++ FS L + V         VDGVV D+GVSSMQID  +RGFSFQK GPLD
Sbjct: 78  EFPGRLNLVESRFSALDEAVARMSGAGKKVDGVVLDIGVSSMQIDEAERGFSFQKDGPLD 137

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRMS  G SA+D VN+    DL RI   LGEE+ A RIA  I KRR + PF  T DL++ 
Sbjct: 138 MRMSSRGPSAADAVNRLKTGDLARIFNFLGEERHAGRIARMIEKRRAAKPFTRTLDLANA 197

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           I+  V  +  +RIHPATR FQALR++VN+E+ ELA+ L +AE+ LK GG L+VV+FHSLE
Sbjct: 198 IETLVGRNPKDRIHPATRVFQALRVYVNDELGELARALLAAERILKPGGRLVVVTFHSLE 257

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           DR+VK+FFA R+G     RHM  ++     F    K  V PT E+   N R+RSAKLRAG
Sbjct: 258 DRMVKRFFADRAGGSAGSRHMPETHMRLPSFTPAVKGAVGPTPEEEERNPRARSAKLRAG 317

Query: 315 MRTVERSIEDD-SFVHLPRLPTLSQF 339
           +RT    +EDD S   LP+LP  ++ 
Sbjct: 318 IRTENAPLEDDLSLFGLPKLPETNEL 343


>gi|312128123|ref|YP_003992997.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311778142|gb|ADQ07628.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 307

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 129/309 (41%), Positives = 191/309 (61%), Gaps = 10/309 (3%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSC 73
           + +H+PVLLE+ ++ L   P  + +DATFG GG+S+   +  SN   ++A+D+D  A+  
Sbjct: 1   MFEHIPVLLEESVSFLITNPDGIYVDATFGLGGHSKRILEKLSNKGFLVAIDKDLEAIEL 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130
           G+  +  YK    +  ++FS++ + +   G+   DG++FD GVSS+Q+D  +RGFS+ K 
Sbjct: 61  GKRRLEAYK-NIKIVHSSFSKVDEVLESLGIAKIDGILFDFGVSSLQLDKQERGFSYSKE 119

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM   S ++A DVVN  + +DL RI+   GEE+ A RIA AIV+RR   P +TT 
Sbjct: 120 AFLDMRMDTTSKLTAYDVVNFYSQEDLERIIREYGEERFARRIAKAIVERRSKKPIETTT 179

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           DLSSLI   V   K+   HPA R+FQA+RI VN E+EE+   L  +   LK+GG +  +S
Sbjct: 180 DLSSLISSLVPKPKDGS-HPAQRTFQAIRIEVNRELEEIKVALEKSLGFLKSGGRICAIS 238

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK+FF   S + +  +   +         + ITKK +VP++E++  NRRS S
Sbjct: 239 FHSLEDRIVKEFFKFHSLECICPKDIPVCRCGKKKQLEIITKKPIVPSKEEIERNRRSHS 298

Query: 309 AKLRAGMRT 317
           AKLR   + 
Sbjct: 299 AKLRVAQKV 307


>gi|313632482|gb|EFR99498.1| S-adenosyl-methyltransferase MraW [Listeria seeligeri FSL N1-067]
          Length = 312

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 102/311 (32%), Positives = 174/311 (55%), Gaps = 9/311 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H  VLL + + +L   P  + +DAT G  G+S           ++ A D+D  A+  
Sbjct: 1   MFKHETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +  +  Y ++ +  ++ F  +++ + ++G   VDG+++DLGVSS Q+D  +RGFS+ + 
Sbjct: 61  AKIKLAAYSDKVTFVKSNFRYMKEALNERGISEVDGILYDLGVSSPQLDERERGFSYHQD 120

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM     ++A  VVN+ + +DL RI    GEEK + +IA  I +RR+  P +TT 
Sbjct: 121 AALDMRMDREQELTAKIVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTG 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I+  +   ++    HP  R+FQA+RI VN+E+  +   L  A   +K GG + V+
Sbjct: 181 ELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLIKPGGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F   + G  +     +  + +   F+  T+K +VP++E++  N R+R
Sbjct: 241 TFHSLEDRITKHLFQEATKGPDLPPGLPVIPDEYKPDFKLATRKPIVPSEEELEQNNRAR 300

Query: 308 SAKLRAGMRTV 318
           SAKLR   + +
Sbjct: 301 SAKLRVIEKII 311


>gi|254993138|ref|ZP_05275328.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL
           J2-064]
          Length = 308

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 104/306 (33%), Positives = 173/306 (56%), Gaps = 9/306 (2%)

Query: 22  PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETM 78
            VLL + + +L   P  + +DAT G  G+S           ++ A D+D  A+   +  +
Sbjct: 2   TVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDNAKIKL 61

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
            DY ++ +  +A F  +++ + ++G   VDG+++DLGVSS Q+D  +RGFS+ +   LDM
Sbjct: 62  ADYSDKVTFIKANFRDMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQDAALDM 121

Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM     ++A  VVN+ + +DL RI    GEEK + +IA  I +RR+  P +TT +L  +
Sbjct: 122 RMDQEQELTAKIVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTGELVDI 181

Query: 195 IQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           I+  +   ++    HP  R+FQA+RI VN+E+  +   L  A   LK GG + V++FHSL
Sbjct: 182 IKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLLKPGGRISVITFHSL 241

Query: 254 EDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           EDR+ K  F   + G  +     +  + +   F+  T+K +VP++E++  N R+RSAKLR
Sbjct: 242 EDRITKHLFQEATKGPDLPPGLPVIPDEYKPDFKLATRKPIVPSEEELEQNNRARSAKLR 301

Query: 313 AGMRTV 318
              + +
Sbjct: 302 VIEKII 307


>gi|270307713|ref|YP_003329771.1| S-adenosyl-methyltransferase [Dehalococcoides sp. VS]
 gi|270153605|gb|ACZ61443.1| S-adenosyl-methyltransferase [Dehalococcoides sp. VS]
          Length = 349

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 122/313 (38%), Positives = 185/313 (59%), Gaps = 12/313 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72
           T   H+PV+LE+ I  L   PG   +D T GAGG+S +  +    G  ++++D DP A++
Sbjct: 2   TEYPHIPVMLEESIQGLGVIPGGRYVDCTLGAGGHSEAILEHSYPGGQLLSIDADPKAIA 61

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
              E ++ +     L    F+ L+D         V G++FDLG+SSMQ+D  + GFSFQ 
Sbjct: 62  LAAERLKGFGSSVLLVNDNFANLKDICQRYEYMPVHGILFDLGLSSMQLDREESGFSFQT 121

Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMR S    +SA+D+VN   +  L+ ++   GEE  + RIA AI+++R   PF+TT
Sbjct: 122 EAPLDMRFSPGQELSAADIVNTYGLAGLSDLIWKYGEEPFSRRIARAILEKR---PFKTT 178

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+S+I+K V   ++ RIHPATR+FQALRI VN E+  L   L  A+  L  GG L+V+
Sbjct: 179 TELASVIEKAV-GGRHGRIHPATRTFQALRIAVNEELSHLESALAQAQSLLGHGGRLVVI 237

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           S+HSLEDR+VK++F   +   +    +      H    + I ++V+ P+ E+++ N RSR
Sbjct: 238 SYHSLEDRIVKQYFQREAKGCICPDDIPQCVCDHQPSLRIINRRVITPSDEEISRNPRSR 297

Query: 308 SAKLRAGMRTVER 320
           SAK+R   R +E 
Sbjct: 298 SAKMRVAERIIEP 310


>gi|291547133|emb|CBL20241.1| S-adenosyl-methyltransferase MraW [Ruminococcus sp. SR1/5]
          Length = 311

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 104/307 (33%), Positives = 162/307 (52%), Gaps = 10/307 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            H  VLL + I  L   P  + +D T G  G++   CK        I +D+D  A+    
Sbjct: 4   KHKSVLLNETIDGLRVKPDGIYVDGTLGGAGHATEVCKKLSAKGRFIGIDQDQDAIIAAS 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E +  +  Q ++ ++ +  + D +  +G   VDG++ DLGVSS Q+D  +RGFS++   P
Sbjct: 64  ERLSAF-NQVTIIRSNYCYMADELRSRGIEKVDGILLDLGVSSYQLDNEERGFSYRYDSP 122

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM      +A D+VN    ++L RI+   GE+K A  IA  IV  R+ AP +TT +L
Sbjct: 123 LDMRMDRRQSRTAGDIVNGYEERELYRIIRDYGEDKFAKNIAKHIVAAREQAPIRTTGEL 182

Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           + +I+  +    +    HPA R+FQA+RI +N E++ L   L      L  GG + +++F
Sbjct: 183 TEIIRGAIPMKIQATGGHPAKRTFQAIRIELNRELDVLRDSLDGMIDLLDDGGRICIITF 242

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  F              +      +  + IT+K ++P +E++  N RS+SA
Sbjct: 243 HSLEDRIVKTIFRKNENPCTCPPDFPVCVCGKKSKGKVITRKPILPGKEEMEENPRSKSA 302

Query: 310 KLRAGMR 316
           KLR   R
Sbjct: 303 KLRIFER 309


>gi|308069889|ref|YP_003871494.1| S-adenosyl-methyltransferase mraW [Paenibacillus polymyxa E681]
 gi|305859168|gb|ADM70956.1| S-adenosyl-methyltransferase mraW [Paenibacillus polymyxa E681]
          Length = 316

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 109/315 (34%), Positives = 173/315 (54%), Gaps = 15/315 (4%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSC 73
           +  H+ VL E+    LN     + +D T G  G+S            +IA D+D +A++ 
Sbjct: 1   MFHHITVLKEEATQALNIRQDGIYVDCTLGGAGHSSVIASQLGPEGRLIAFDQDDWALNN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---------VDGVVFDLGVSSMQIDCGDRG 124
            +E +  Y+ + SL ++ F  LQD + + G         V G++FDLGVSS Q D G+RG
Sbjct: 61  AREKLSAYEGKISLVKSNFRHLQDKLTELGLPEKDGVPQVQGILFDLGVSSPQFDEGERG 120

Query: 125 FSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           FS+    PLDMRM  S  ++A ++VN+ +  ++ RIL   GEEK + RIA  +++RR + 
Sbjct: 121 FSYNHDAPLDMRMDQSSSLTAYEIVNEWSEAEIARILFHYGEEKFSRRIAKIMIERRLNK 180

Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           P  TT +L  +I++ +  + +    HPA RSFQALRI VN+E+  L   L  A + L  G
Sbjct: 181 PIHTTGELVDIIKEGIPAAARRTGGHPAKRSFQALRIAVNDELGALEDSLHQAIRCLAPG 240

Query: 243 GLLIVVSFHSLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           G + V++FHSLEDR+ K  F    +  +      I  +      + + +K ++ +++++ 
Sbjct: 241 GRISVITFHSLEDRICKHIFKEYLAKSIYPSDLPILEDKMEGDLKLVNRKPIMASEQELE 300

Query: 302 FNRRSRSAKLRAGMR 316
            N RSRSAKLR   +
Sbjct: 301 LNPRSRSAKLRVAEK 315


>gi|146319398|ref|YP_001199110.1| S-adenosyl-methyltransferase MraW [Streptococcus suis 05ZYH33]
 gi|146321602|ref|YP_001201313.1| S-adenosyl-methyltransferase MraW [Streptococcus suis 98HAH33]
 gi|145690204|gb|ABP90710.1| Predicted S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [Streptococcus suis 05ZYH33]
 gi|145692408|gb|ABP92913.1| Predicted S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [Streptococcus suis 98HAH33]
 gi|292559026|gb|ADE32027.1| methyltransferase [Streptococcus suis GZ1]
          Length = 323

 Score =  384 bits (988), Expect = e-105,   Method: Composition-based stats.
 Identities = 107/323 (33%), Positives = 171/323 (52%), Gaps = 15/323 (4%)

Query: 5   SCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNV 61
           + K M+        +H  VLL + + +L+  P  + +DAT G  G+S         G ++
Sbjct: 4   NGKDMTKEF-----NHTTVLLHETVDMLDIKPNGIYVDATLGGAGHSEYLLSQLTDGGHL 58

Query: 62  IALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSM 116
            A D+D  A+      +  Y  K Q +  +  F  L+  + + GV   DG+ +DLGVSS 
Sbjct: 59  YAFDQDQTAIDHAHIRLASYIEKGQVTFIRDNFRNLKTRLAELGVTEIDGICYDLGVSSP 118

Query: 117 QIDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175
           Q+D  +RGFS+++  PLDMRM+  G ++A DVVN  +  DL RI    GE+K + +IA  
Sbjct: 119 QLDERERGFSYKQDAPLDMRMNREGHLTAYDVVNNYDYHDLVRIFFKYGEDKFSKQIARK 178

Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRS 234
           I + R   P +TT +L+ LI+      +   + HPA + FQA+RI VN+E+    + ++ 
Sbjct: 179 IEQARAVKPIETTTELAELIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQ 238

Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVV 294
           A   L   G + V++FHSLEDRL K+ F   S   +        +   A  + + +K ++
Sbjct: 239 AIDLLALDGRISVITFHSLEDRLTKQLFKEASTIDVPKGLPFIPDDLKAPLELVNRKPIL 298

Query: 295 PTQEDVAFNRRSRSAKLRAGMRT 317
           P+QE++  N R+ SAKLR   + 
Sbjct: 299 PSQEELEANNRAHSAKLRVAKKV 321


>gi|55821677|ref|YP_140119.1| S-adenosyl-methyltransferase MraW [Streptococcus thermophilus LMG
           18311]
 gi|55737662|gb|AAV61304.1| S-adenosylmethionine-dependent methyltransferase, putative
           [Streptococcus thermophilus LMG 18311]
          Length = 354

 Score =  384 bits (988), Expect = e-105,   Method: Composition-based stats.
 Identities = 110/324 (33%), Positives = 173/324 (53%), Gaps = 17/324 (5%)

Query: 6   CKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVI 62
            K M++  H     HV VLL + + +L+  P  + +DAT G  G+S           ++ 
Sbjct: 36  IKIMTNEFH-----HVTVLLHETVDMLDIKPDGIYVDATLGGAGHSSYLLSQLSEKGHLY 90

Query: 63  ALDRDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQ 117
             D+D  A+   Q  ++DY ++   +  +  F  L+  +   GV   DG+++DLGVSS Q
Sbjct: 91  CFDQDQKAIDNAQVRLKDYIDKGMVTFIKDNFRNLKSNLEALGVSEIDGILYDLGVSSPQ 150

Query: 118 IDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
           +D  +RGFS+++   LDMRM+    ++A DVVN     DL RI    GE+K + +IA  I
Sbjct: 151 LDERERGFSYKQDAKLDMRMNEEASLTAYDVVNTYPYNDLVRIFFKYGEDKFSKQIARKI 210

Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
            + RQ  P +TT +L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A
Sbjct: 211 EQARQVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQEA 270

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVV 294
              L   G + V++FHSLEDRL K+ F   S   V      IP +  P V   + +K ++
Sbjct: 271 LDLLAVNGRISVITFHSLEDRLTKQLFKEASTADVPKGLPFIPEDLQPKV-ALVNRKPIL 329

Query: 295 PTQEDVAFNRRSRSAKLRAGMRTV 318
           P+QE++  N RS SAKLR   +  
Sbjct: 330 PSQEELEANNRSHSAKLRVAKKIR 353


>gi|322386906|ref|ZP_08060530.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus cristatus ATCC 51100]
 gi|321269188|gb|EFX52124.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus cristatus ATCC 51100]
          Length = 316

 Score =  384 bits (988), Expect = e-105,   Method: Composition-based stats.
 Identities = 103/321 (32%), Positives = 170/321 (52%), Gaps = 15/321 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           M+   H     H+ VLL + I  L+     + +DAT G  G+S           ++ A D
Sbjct: 1   MTKEFH-----HITVLLHETIDQLDVRSDGIYVDATLGGAGHSEYLLSKLGDKGHLYAFD 55

Query: 66  RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120
           +D  A+   ++ +  Y E+   +  +  F  L+  + + GV   DG+ +DLGVSS Q+D 
Sbjct: 56  QDQTAIDNAKKRLAPYIERGMVTFIKDNFRNLKTRLNEVGVEKIDGICYDLGVSSPQLDE 115

Query: 121 GDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS+++  PLDMRM+    ++A  VVNQ    DL RI    GE+K + +IA  I + 
Sbjct: 116 RERGFSYKQDAPLDMRMNQEAALTAYQVVNQYPYNDLVRIFFKYGEDKFSKQIARKIEQA 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R+  P +TT +L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   
Sbjct: 176 REIKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDL 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L  GG + V++FHSLEDRL K+ F   S   +        +      + +++K ++P++E
Sbjct: 236 LAVGGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPDDLQPKLELVSRKPILPSKE 295

Query: 299 DVAFNRRSRSAKLRAGMRTVE 319
           ++  N R+ SAKLR   +  E
Sbjct: 296 ELEANNRAHSAKLRVARKVHE 316


>gi|312876343|ref|ZP_07736328.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796837|gb|EFR13181.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 307

 Score =  384 bits (988), Expect = e-105,   Method: Composition-based stats.
 Identities = 126/309 (40%), Positives = 193/309 (62%), Gaps = 10/309 (3%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSC 73
           + +H+PVLLE+ ++ L   P  + +DATFG GG+S+   +  SN   ++A+D+D  A+  
Sbjct: 1   MFEHIPVLLEESVSFLITNPDGIYVDATFGLGGHSKRILEKLSNKGFLVAIDKDLEAIEL 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130
           G+  +  YK    +  ++FS++ + +   G+   DG++FD GVSS+Q+D  +RGFS+ K 
Sbjct: 61  GKRRLEGYK-NIKIVHSSFSKVDEVLESLGIEKIDGILFDFGVSSLQLDKQERGFSYSKE 119

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM   S ++A DV+N  + +DL RI+   GEE+ A RIA AIV+RR++ P +TT 
Sbjct: 120 AFLDMRMDTTSKLTAYDVINFYSQEDLERIIREYGEERFARRIAKAIVERRRNKPIETTT 179

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           +LSSLI   V   K+   HPA R+FQA+RI VN E+EE+   L  + + LK+GG +  +S
Sbjct: 180 ELSSLISSVVPKPKDGS-HPAQRTFQAIRIEVNRELEEIKIALEKSLRFLKSGGRICAIS 238

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK FF   S + +  +   +         + ITKK +VP++E++  N+RS S
Sbjct: 239 FHSLEDRIVKGFFKFHSLECICPKDIPVCRCGKKKELEIITKKPIVPSKEEIERNKRSHS 298

Query: 309 AKLRAGMRT 317
           AKLR   + 
Sbjct: 299 AKLRVAQKV 307


>gi|121535927|ref|ZP_01667723.1| S-adenosyl-methyltransferase MraW [Thermosinus carboxydivorans
           Nor1]
 gi|121305498|gb|EAX46444.1| S-adenosyl-methyltransferase MraW [Thermosinus carboxydivorans
           Nor1]
          Length = 313

 Score =  384 bits (988), Expect = e-105,   Method: Composition-based stats.
 Identities = 119/307 (38%), Positives = 168/307 (54%), Gaps = 8/307 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQ 75
            H  VLLE+ +A L   P  + +D T G GG+S            +I +D+DP A++ GQ
Sbjct: 7   HHKTVLLEESVAALVTNPAGIYVDCTLGGGGHSALIASRLSPEGWLIGIDQDPAAIAAGQ 66

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +     +  L +  FS L   +   G   VDGV+FDLGVSS Q+D   RGFS+ +  P
Sbjct: 67  ARLAGASCRIDLVRDNFSNLSRILTTLGIESVDGVLFDLGVSSHQLDVAQRGFSYMQDAP 126

Query: 133 LDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S   SA DVVN  +  DLTRI+   GEE+ A RIA  IV+ R +AP  TT  L
Sbjct: 127 LDMRMDPSAPISAYDVVNTYSEDDLTRIIRDYGEERWARRIAQFIVQARMTAPICTTGQL 186

Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           + +I++ +  + + +  HPA R+FQA+RI VNNE+  L     +A + LK GG + +++F
Sbjct: 187 TDIIKRAIPAAARRDGPHPAKRTFQAIRIEVNNELSILQDAFITAVQFLKCGGRICIITF 246

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDR+ K    S +   +    +     H      I  K + PT E++  N R+RSAK
Sbjct: 247 HSLEDRIAKHTLQSLAKGCVCPPQLPICVCHNKPKLKILGKPITPTAEELDDNHRARSAK 306

Query: 311 LRAGMRT 317
           LR   + 
Sbjct: 307 LRVAEKV 313


>gi|147678204|ref|YP_001212419.1| S-adenosyl-methyltransferase MraW [Pelotomaculum thermopropionicum
           SI]
 gi|262824781|sp|A5D113|RSMH_PELTS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|146274301|dbj|BAF60050.1| predicted S-adenosylmethionine-dependent methyltransferase
           [Pelotomaculum thermopropionicum SI]
          Length = 311

 Score =  384 bits (987), Expect = e-105,   Method: Composition-based stats.
 Identities = 116/306 (37%), Positives = 175/306 (57%), Gaps = 9/306 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H PV+L++V+  LN  PG V +D T G  G+  +  K       +I +DRDP A++  + 
Sbjct: 5   HRPVMLDEVLEGLNLKPGGVYVDCTVGGAGHGEAILKRTGAEGRLIGIDRDPEALAAAER 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  Y ++  L +A F  +   +      GVDG++FDLGVSS Q+D   RGFS+++   L
Sbjct: 65  RLVPYGKRVDLVRANFEDIGKVLERLGQTGVDGILFDLGVSSYQLDNPARGFSYKRDSLL 124

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM    G SA ++VN    ++L RI+   GEE+ A RIA  IV+ R+ +P +TT  L+
Sbjct: 125 DMRMDPERGPSARELVNTLTAEELARIIKDYGEERWAFRIAAFIVEERKRSPIETTGRLA 184

Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+K +   ++    HPA R+FQALRI VN E+E L   LRSA + L+ GG + V+++H
Sbjct: 185 EIIKKAIPAGARREGPHPARRTFQALRIAVNRELEVLGGALRSAVRVLRPGGRICVITYH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK+ F   +      +             + +T + VVP+  +V  N R+RSAK
Sbjct: 245 SLEDRIVKETFRRLASPCTCPKEFPACVCGGKKEIKIVTARPVVPSAGEVEENPRARSAK 304

Query: 311 LRAGMR 316
           LR   +
Sbjct: 305 LRIAEK 310


>gi|253580157|ref|ZP_04857424.1| MraW methylase MraW [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848676|gb|EES76639.1| MraW methylase MraW [Ruminococcus sp. 5_1_39BFAA]
          Length = 311

 Score =  384 bits (987), Expect = e-105,   Method: Composition-based stats.
 Identities = 105/309 (33%), Positives = 164/309 (53%), Gaps = 10/309 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            H  VLLE+ I  L+  P  + +D T G  G++   C+        I +D+D  A+    
Sbjct: 4   KHKSVLLEETIEGLDIKPDGIYVDGTLGGAGHAGEVCRKLSAKGRFIGIDQDQDAIIAAS 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E +  YK Q ++ ++ +  +   +  +G   VDG++ DLGVSS Q+D  +RGF+++   P
Sbjct: 64  ERLAPYK-QATIIRSNYCYMVQELAARGIYKVDGILLDLGVSSYQLDNEERGFTYRVDAP 122

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM      +A D+VN    K+L RI+   GE+K A  IA  IV  RQ  P  TT +L
Sbjct: 123 LDMRMDQRQTQTAGDIVNGYEEKELYRIIRDYGEDKFAKNIAKHIVAARQVKPITTTGEL 182

Query: 192 SSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           + +I++++      +  HPA R+FQA+RI +N E++ L   L      L  GG L +++F
Sbjct: 183 TEIIRESIPMKMQVKSGHPAKRTFQAIRIELNRELDVLRDSLDGMIDILDDGGRLCIITF 242

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  F              +      +  + IT+K ++P + ++  N RS+SA
Sbjct: 243 HSLEDRIVKTIFRKNENPCTCPSDFPVCVCGKKSKGKVITRKPILPGETEMEENPRSKSA 302

Query: 310 KLRAGMRTV 318
           KLR   R +
Sbjct: 303 KLRIFERVL 311


>gi|55823597|ref|YP_142038.1| S-adenosyl-methyltransferase MraW [Streptococcus thermophilus
           CNRZ1066]
 gi|55739582|gb|AAV63223.1| S-adenosylmethionine-dependent methyltransferase, putative
           [Streptococcus thermophilus CNRZ1066]
          Length = 354

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 110/324 (33%), Positives = 173/324 (53%), Gaps = 17/324 (5%)

Query: 6   CKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVI 62
            K M++  H     HV VLL + + +L+  P  + +DAT G  G+S           ++ 
Sbjct: 36  IKIMTNEFH-----HVTVLLHETVDMLDIKPDGIYVDATLGGAGHSSYLLSQLSEKGHLY 90

Query: 63  ALDRDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQ 117
             D+D  A+   Q  ++DY ++   +  +  F  L+  +   GV   DG+++DLGVSS Q
Sbjct: 91  CFDQDQKAIDNAQVRLKDYIDKGMVTFIKDNFRNLKSNLEALGVSEIDGILYDLGVSSPQ 150

Query: 118 IDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
           +D  +RGFS+++   LDMRM+    ++A DVVN     DL RI    GE+K + +IA  I
Sbjct: 151 LDERERGFSYKQDAKLDMRMNEEASLTAYDVVNTYPYNDLVRIFFKYGEDKFSKQIARKI 210

Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
            + RQ  P +TT +L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A
Sbjct: 211 EQARQVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQEA 270

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVV 294
              L   G + V++FHSLEDRL K+ F   S   V      IP +  P V   + +K ++
Sbjct: 271 LDLLAVDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPEDLQPKV-ALVNRKPIL 329

Query: 295 PTQEDVAFNRRSRSAKLRAGMRTV 318
           P+QE++  N RS SAKLR   +  
Sbjct: 330 PSQEELEANNRSHSAKLRVAKKIR 353


>gi|160915591|ref|ZP_02077802.1| hypothetical protein EUBDOL_01601 [Eubacterium dolichum DSM 3991]
 gi|158432711|gb|EDP11000.1| hypothetical protein EUBDOL_01601 [Eubacterium dolichum DSM 3991]
          Length = 311

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 115/310 (37%), Positives = 172/310 (55%), Gaps = 9/310 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74
           +  H  VLL + +  L      + +D T G GG+S    +     ++ A DRD  A+   
Sbjct: 1   MSKHYSVLLSECLEGLAIRADGIYVDGTLGRGGHSAQILQRIPKGHLYAFDRDETAIKES 60

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +E +      F+L    FS L++ + ++G+   DG++ DLGVSS Q D G+RGFS++   
Sbjct: 61  KERLLSIASNFTLIHNQFSMLKEELSNRGIYQIDGMLLDLGVSSPQFDDGERGFSYRYDA 120

Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  S   +A DVVN  +  +L RI    GEEK A +IA  I K+R   P  TT +
Sbjct: 121 PLDMRMDQSQQKNAYDVVNSYDYHELVRIFYQYGEEKFAKQIAKNIEKQRAIKPIATTFE 180

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I+ ++     N + HPA + FQA+RI VN+E++E+   L+ A   L  GG L V+S
Sbjct: 181 LVEVIKASLPAKVLNKKGHPAKKVFQAIRIEVNDELKEIETVLQDAMDMLAVGGRLCVIS 240

Query: 250 FHSLEDRLVKKFFASRS--GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           F SLEDR+VK+ F  RS   KV     M+P +     ++ + +K ++ ++E++  N RS 
Sbjct: 241 FQSLEDRIVKEAFHERSTPKKVDKRIPMLPQDIETVDYRLVNRKPIIASEEELEENNRSH 300

Query: 308 SAKLRAGMRT 317
           SAKLR   R 
Sbjct: 301 SAKLRIIERV 310


>gi|148559451|ref|YP_001259332.1| S-adenosyl-methyltransferase MraW [Brucella ovis ATCC 25840]
 gi|263446879|sp|A5VRI5|RSMH_BRUO2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|148370708|gb|ABQ60687.1| S-adenosyl-methyltransferase MraW [Brucella ovis ATCC 25840]
          Length = 346

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 167/326 (51%), Positives = 217/326 (66%), Gaps = 6/326 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           HVPVL+ +VI  L PAPG VI+D TFGAGGY+R   + G++VIA+DRDP A+  G+   +
Sbjct: 18  HVPVLIAEVIDALKPAPGAVIVDGTFGAGGYTRRILETGADVIAIDRDPTAIEAGRAMEK 77

Query: 80  DYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++  + +L ++ FS L + V         VDGVV D+GVSSMQID  +RGFSFQK GPLD
Sbjct: 78  EFPGRLNLVESRFSALDEAVARMSGAGKKVDGVVLDIGVSSMQIDEAERGFSFQKDGPLD 137

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRMS  G SA+D VN+    DL RI   LGEE+ A RIA  I KRR + PF  T DL++ 
Sbjct: 138 MRMSSRGSSAADAVNRLKTGDLARIFNFLGEERHAGRIARMIEKRRAAKPFTRTLDLANA 197

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           I+  V  +  +RIHPATR FQALR++VN+E+ ELA+ L +AE+ LK GG L+VV+FHSLE
Sbjct: 198 IETLVGRNPKDRIHPATRVFQALRVYVNDELGELARALLAAERILKPGGRLVVVTFHSLE 257

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           DR+VK+FFA R+G     RHM  ++     F    K  V PT E+   N R+RSAKLRAG
Sbjct: 258 DRMVKRFFADRAGGSAGSRHMPETHMRLPSFTPAVKGAVGPTPEEEERNPRARSAKLRAG 317

Query: 315 MRTVERSIEDD-SFVHLPRLPTLSQF 339
           +RT    +EDD S   LP+LP  ++ 
Sbjct: 318 IRTENSPLEDDLSLFGLPKLPETNEL 343


>gi|227889751|ref|ZP_04007556.1| S-adenosyl-methyltransferase [Lactobacillus johnsonii ATCC 33200]
 gi|227849615|gb|EEJ59701.1| S-adenosyl-methyltransferase [Lactobacillus johnsonii ATCC 33200]
          Length = 322

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 111/321 (34%), Positives = 173/321 (53%), Gaps = 13/321 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDR 66
           M+S+       H  VLL + I  LNP  G + +DATFG GG++R          VI  D+
Sbjct: 1   MTSSYKIMKFKHKSVLLHETIDNLNPKDGGLYVDATFGGGGHARYLLSKLNKGTVIGFDQ 60

Query: 67  DPFAVSCGQETMRD-----YKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQ 117
           D +A+S  +E+         + +  L    F  L++ + +     G+DG+ +DLGVSS Q
Sbjct: 61  DEYAISMAKESFAKELQVGAEPRLILVHDNFCHLKENLVELGISDGIDGIYYDLGVSSPQ 120

Query: 118 IDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
            D  +RGFS++    LDMRM  S  + A  +VN  + K+L+ +L   G+EK + +IA  I
Sbjct: 121 FDQPERGFSYRFDARLDMRMDQSQELDAYTIVNTWSQKELSDVLYKYGDEKFSRQIARKI 180

Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           V RR+  P  TT DL  +I+  +   ++ +  HPA +SFQA+R+ VNNE+  L + L  A
Sbjct: 181 VDRRKEKPIVTTFDLVDVIKDAIPAYARRSGGHPAKKSFQAIRVAVNNELGVLQESLEEA 240

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295
            K LK GG + V++F S ED++VKK F   S   +     +         + I++K ++ 
Sbjct: 241 IKLLKPGGRISVITFQSHEDKIVKKIFKKYSEVEIPRGMPMVPADSKPTLRLISRKPIMA 300

Query: 296 TQEDVAFNRRSRSAKLRAGMR 316
           + +++  N RS SAKLR   +
Sbjct: 301 SSDELEENNRSHSAKLRVAEK 321


>gi|229822998|ref|ZP_04449068.1| hypothetical protein GCWU000282_00291 [Catonella morbi ATCC 51271]
 gi|229787811|gb|EEP23925.1| hypothetical protein GCWU000282_00291 [Catonella morbi ATCC 51271]
          Length = 314

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 113/310 (36%), Positives = 169/310 (54%), Gaps = 11/310 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H  VLL + +  L+  P  V +D T G  G+++          ++ A D+D  A++  +
Sbjct: 4   KHETVLLHETVDGLDIKPDGVYVDCTLGGAGHAQYLLGQLGPQGHLYAFDQDMTAINNAK 63

Query: 76  ETMRDY--KEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
             + DY  K Q +     F  L+  + + G   VDG+ +DLGVSS Q+D  +RGFS+ + 
Sbjct: 64  LKLADYVEKGQVTFIHQNFRHLKQALEELGISQVDGIYYDLGVSSPQLDVAERGFSYGQE 123

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM+    +SA +VVN+   +DL  IL   GEEK A RIA AI +RR   P +TT 
Sbjct: 124 ARLDMRMNQEQALSAYEVVNEWPYEDLVHILYRYGEEKFAKRIARAIEERRAQRPIETTT 183

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L+ +++  +  + +    HPA RSFQA+RI VN+E+  +   L  A   LK  G + V+
Sbjct: 184 ELAEIVKMAIPAATRRTGGHPAKRSFQAIRIAVNDELGAVEDSLEQALTLLKPEGRVSVI 243

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRLVK+ F   S +    R +        A F  + +K +V + E++  N RSR
Sbjct: 244 TFHSLEDRLVKQLFKEVSQEPEVPRGLPVLPGQMQAPFTLVNRKPIVASPEELEANNRSR 303

Query: 308 SAKLRAGMRT 317
           SAKLR   + 
Sbjct: 304 SAKLRILRKN 313


>gi|329667562|gb|AEB93510.1| S-adenosyl-methyltransferase MraW [Lactobacillus johnsonii DPC
           6026]
          Length = 322

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 111/321 (34%), Positives = 173/321 (53%), Gaps = 13/321 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDR 66
           M+S+       H  VLL + I  LNP  G + +DATFG GG++R          VI  D+
Sbjct: 1   MTSSYKIMKFKHKSVLLHETIDNLNPKDGGLYVDATFGGGGHARYLLSKLNKGTVIGFDQ 60

Query: 67  DPFAVSCGQETMRD-----YKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQ 117
           D +A+S  +E+         + +  L    F  L++ + +     G+DG+ +DLGVSS Q
Sbjct: 61  DEYAISMAKESFAKELQVGAEPRLMLVHDNFCHLKENLVELGISDGIDGIYYDLGVSSPQ 120

Query: 118 IDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
            D  +RGFS++    LDMRM  S  + A  +VN  + K+L+ +L   G+EK + +IA  I
Sbjct: 121 FDQPERGFSYRFDARLDMRMDQSQELDAYTIVNTWSQKELSDVLYKYGDEKFSRQIARKI 180

Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           V RR+  P  TT DL  +I+  +   ++ +  HPA +SFQA+R+ VNNE+  L + L  A
Sbjct: 181 VDRRKEKPIVTTFDLVDVIKDAIPAYARRSGGHPAKKSFQAIRVAVNNELGVLQESLEEA 240

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295
            K LK GG + V++F S ED++VKK F   S   +     +         + I++K ++ 
Sbjct: 241 IKLLKPGGRISVITFQSHEDKIVKKIFKKYSEVKIPRGMPMVPADSKPTLRLISRKPIMA 300

Query: 296 TQEDVAFNRRSRSAKLRAGMR 316
           + +++  N RS SAKLR   +
Sbjct: 301 SSDELEENNRSHSAKLRVAEK 321


>gi|242278175|ref|YP_002990304.1| S-adenosyl-methyltransferase MraW [Desulfovibrio salexigens DSM
           2638]
 gi|263446206|sp|C6BYH4|RSMH_DESAD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|242121069|gb|ACS78765.1| S-adenosyl-methyltransferase MraW [Desulfovibrio salexigens DSM
           2638]
          Length = 324

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 128/311 (41%), Positives = 178/311 (57%), Gaps = 11/311 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQE 76
           H  VLL +VI  L P PG   LD T G  G+S +  K    G+ +  LDRD  A+    E
Sbjct: 12  HTSVLLNEVIEWLAPKPGGRYLDGTLGMAGHSSAILKIAGEGAELAGLDRDEQALELAGE 71

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  + ++   F   FS+ +  + + G   VDGVV DLGVSS+ +D  +RGFSF K GPL
Sbjct: 72  RLAPFGDRAHRFHLAFSKFEAALDELGWDTVDGVVLDLGVSSLHLDHAERGFSFIKDGPL 131

Query: 134 DMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           DMRM  +G    AS +VN+ +  DL RIL + GEE  AS+I  AI+  R+     TT  L
Sbjct: 132 DMRMDPAGGMPPASSIVNKGSYSDLNRILKLYGEEPLASKITKAIIAAREEEKITTTLQL 191

Query: 192 SSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           +S+++K     +   +R HPAT++FQ LRI VN+E+EEL   L    + L  G  + ++S
Sbjct: 192 ASIVEKAYPAKRRALSRTHPATKTFQGLRIAVNSELEELKTFLDRIPERLSPGARVAIIS 251

Query: 250 FHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VKK F ++S          I +     +   +T+K V+PT+E++  N RSRS
Sbjct: 252 FHSLEDRIVKKTFKAQSQSCDCPPMQPICTCGKVKLMNVLTRKPVLPTEEEMKVNTRSRS 311

Query: 309 AKLRAGMRTVE 319
           AKLR   RT E
Sbjct: 312 AKLRVAERTGE 322


>gi|313888490|ref|ZP_07822157.1| S-adenosyl-methyltransferase MraW [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845519|gb|EFR32913.1| S-adenosyl-methyltransferase MraW [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 312

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 110/306 (35%), Positives = 167/306 (54%), Gaps = 10/306 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H  VLL++ I  LN   GK+ LD T G  G+SR   K       +I +D+D  A+   +E
Sbjct: 5   HKSVLLDETIEGLNIREGKIYLDGTLGGAGHSREILKKLKGTGLLIGIDQDIEALEVAKE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + +YK     F   +   +  + + G+D   GV+ D+GVSS Q D  +RGFS++   PL
Sbjct: 65  RLSNYK-NVEFFNLNYINFEKALDELGIDKIDGVLLDIGVSSYQFDNPERGFSYRFDAPL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     ISA D+VN  +  ++TRI+   GEEK A+RIA  IV  R++   +TT +L 
Sbjct: 124 DMRMDQELEISARDIVNTYSESEITRIIKEYGEEKWAARIAKFIVDERKTKNIETTFELV 183

Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  +   ++ N  HPA R+FQALRI VN E++ L   +      L  GG + +++FH
Sbjct: 184 EIIKNAIPASARRNGPHPAKRTFQALRIEVNRELDVLEDSIERFVHRLNPGGRIAIITFH 243

Query: 252 SLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK  F       +      I +       + +T+K +  ++E++  N+RS SAK
Sbjct: 244 SLEDRIVKNAFKYLEKDCICPPSSPICTCDKKKEIKILTRKPITASEEELKENKRSHSAK 303

Query: 311 LRAGMR 316
           LR   +
Sbjct: 304 LRIAEK 309


>gi|163790543|ref|ZP_02184972.1| S-adenosyl-methyltransferase MraW [Carnobacterium sp. AT7]
 gi|159874146|gb|EDP68221.1| S-adenosyl-methyltransferase MraW [Carnobacterium sp. AT7]
          Length = 318

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 107/312 (34%), Positives = 171/312 (54%), Gaps = 11/312 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
           T  +H  VLL + +  L+ +P  + +D T G  G+S           ++ A D+D  A+ 
Sbjct: 2   TAFNHETVLLRETVDGLSLSPEGIYVDCTLGGAGHSEYLLSQLNEKGHLYAFDQDDRALE 61

Query: 73  CGQETMRDYKEQ--FSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSF 127
             +  + +Y E+   +  +A F  ++D + + G   VDG+++DLGVSS Q+D  +RGFS+
Sbjct: 62  NAKIRLAEYVEKGMVTFIKANFRYIKDELANLGIKEVDGILYDLGVSSPQLDEAERGFSY 121

Query: 128 QKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
            +  PLDMRM     ++A +V+N+ +  DL RI    GEEK + +IA  I   R+    +
Sbjct: 122 HQDAPLDMRMDTDAPLTAKEVINEWSYHDLIRIFYRYGEEKFSKQIARKIEAAREIKLIE 181

Query: 187 TTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           TT +L  LI+  +   ++    HPA R FQA+RI VN+E+  +   L  A + L  GG +
Sbjct: 182 TTSELVELIKAGIPAPARRKGGHPAKRVFQAVRIAVNDELSSVEDSLEQAIELLAIGGRI 241

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
            V+SFHSLEDR+VK  F   S      R   +  +      + IT+K ++P+++++  N 
Sbjct: 242 SVISFHSLEDRIVKSIFKDHSKGPELPRGLPVVPDGFLPELKLITRKPILPSEQELEVNN 301

Query: 305 RSRSAKLRAGMR 316
           RSRSAKLR   +
Sbjct: 302 RSRSAKLRIAEK 313


>gi|150016452|ref|YP_001308706.1| S-adenosyl-methyltransferase MraW [Clostridium beijerinckii NCIMB
           8052]
 gi|263446053|sp|A6LTS0|RSMH_CLOB8 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|149902917|gb|ABR33750.1| S-adenosyl-methyltransferase MraW [Clostridium beijerinckii NCIMB
           8052]
          Length = 310

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 107/307 (34%), Positives = 165/307 (53%), Gaps = 10/307 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
            HV VLL + I  LN     + +D T G  G+S       S    +I +D+D  A+   +
Sbjct: 4   KHVSVLLNECIEALNIKENGIYVDGTLGGAGHSSHILSNLSKDGMLIGIDQDQDALKAAK 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E ++D+ E      + F  +   + D   + VDG++ DLGVSS Q+D   RGFS+ K  P
Sbjct: 64  EKLKDF-ENVKYVHSNFYNIDSILNDLDIEKVDGILMDLGVSSYQLDEASRGFSYMKDAP 122

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+  +  SA ++VN  +   L +I+   GEE+ A RIA+ I+ RR   P +TT +L
Sbjct: 123 LDMRMNRENDFSAYNIVNNYDEDSLYKIIKDYGEERFAKRIANFIINRRIEKPIETTFEL 182

Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+  +    +    HPA R+FQA+RI VN+E++ L + +      L  GG + +++F
Sbjct: 183 VDIIKAAIPAKMRREGPHPAKRTFQAIRIEVNSELKILNKTIEDGVNRLNKGGRMAIITF 242

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  F          +   +       + ++I KK + PT+E++  N RSRSA
Sbjct: 243 HSLEDRIVKLKFRELENPCTCPKEFPMCICGKSPLVKNIAKKGIAPTKEEIEENPRSRSA 302

Query: 310 KLRAGMR 316
           KLR   +
Sbjct: 303 KLRVIEK 309


>gi|329921076|ref|ZP_08277599.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners SPIN 1401G]
 gi|328934983|gb|EGG31472.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners SPIN 1401G]
          Length = 315

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 111/310 (35%), Positives = 171/310 (55%), Gaps = 13/310 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77
           H  VLL + I  LN     V +DATFG GG++    K     ++I  D+D +A+   +++
Sbjct: 5   HYSVLLHETIDNLNLKNDGVYVDATFGGGGHASYLLKQLSNGHLIGFDQDEYAIELAKKS 64

Query: 78  M-----RDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
                  + K + SL    F  LQ  +       G+DG+ +DLGVSS Q D  +RGFS++
Sbjct: 65  FSEVLKANSKPKLSLVHDNFGNLQQNLAKLGFIDGIDGIYYDLGVSSPQFDQPERGFSYR 124

Query: 129 KSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
            +  LDMRM  +  + A  +VN  + K+L+ IL   G+EK A +IA  IV +R   P  T
Sbjct: 125 FNARLDMRMDQTKDLDAYKIVNTWSQKELSNILFKYGDEKYARQIAKNIVAKRAIKPITT 184

Query: 188 TQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T +L  +I++ +  F++    HPA +SFQA+RI VN+E+E L + L  A + LK GG + 
Sbjct: 185 TFELVDIIKEAIPAFARRTGGHPAKKSFQAIRIAVNDELEVLEKSLLEAIEILKPGGRIC 244

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V++F SLED++VKK F   S   +        ++     + I++K +V T +++  N RS
Sbjct: 245 VITFQSLEDKIVKKIFKKYSDVDIPRGMPQIPDSLKPTLKIISRKPIVATDKELEENNRS 304

Query: 307 RSAKLRAGMR 316
            SAKLR   +
Sbjct: 305 HSAKLRVAEK 314


>gi|312871660|ref|ZP_07731752.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LEAF
           3008A-a]
 gi|311092885|gb|EFQ51237.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LEAF
           3008A-a]
          Length = 315

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 112/311 (36%), Positives = 171/311 (54%), Gaps = 13/311 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76
            H  VLL + I  LN     V +DATFG GG++    K     ++I  D+D +A+   ++
Sbjct: 4   KHYSVLLHETIDNLNLKNDGVYVDATFGGGGHASYLLKQLSNGHLIGFDQDEYAIELAKK 63

Query: 77  TM-----RDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSF 127
           +       + K Q SL    F  LQ  +       G+DG+ +DLGVSS Q D  +RGFS+
Sbjct: 64  SFSEVLKANSKPQLSLVHDNFGNLQQNLAKLGFIDGIDGIYYDLGVSSPQFDQPERGFSY 123

Query: 128 QKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           + +  LDMRM  +  + A  +VN  + K+L+ IL   G+EK A +IA  IV +R   P  
Sbjct: 124 RFNARLDMRMDQTKDLDAYKIVNTWSQKELSNILFKYGDEKYARQIAKNIVAKRAIKPIT 183

Query: 187 TTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           TT +L  +I++ +  F++    HPA +SFQA+RI VN+E+E L + L  A + LK GG +
Sbjct: 184 TTFELVDIIKEAIPAFARRTGGHPAKKSFQAIRIAVNDELEVLEKSLLEAIEILKPGGRI 243

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
            V++F SLED++VKK F   S   +        ++     + I++K +V T +++  N R
Sbjct: 244 CVITFQSLEDKIVKKIFKKYSDVDIPRGMPQVPDSLKPTLKIISRKPIVATNKELEENNR 303

Query: 306 SRSAKLRAGMR 316
           S SAKLR   +
Sbjct: 304 SHSAKLRVAEK 314


>gi|309803099|ref|ZP_07697196.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LactinV
           11V1-d]
 gi|308164607|gb|EFO66857.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LactinV
           11V1-d]
          Length = 315

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 111/311 (35%), Positives = 171/311 (54%), Gaps = 13/311 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76
            H  VLL + I  LN     V +DATFG GG++    K     ++I  D+D +A+   ++
Sbjct: 4   KHYSVLLHETIDNLNLKNDGVYVDATFGGGGHASYLLKQLSNGHLIGFDQDEYAIELAKK 63

Query: 77  TM-----RDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSF 127
           +       + K + SL    F  LQ  +       G+DG+ +DLGVSS Q D  +RGFS+
Sbjct: 64  SFSEVLKANSKPKLSLVHDNFGNLQQNLAKLGFIDGIDGIYYDLGVSSPQFDQPERGFSY 123

Query: 128 QKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           + +  LDMRM  +  + A  +VN  + K+L+ IL   G+EK A +IA  IV +R   P  
Sbjct: 124 RFNARLDMRMDQTKDLDAYKIVNTWSQKELSNILFKYGDEKYARQIAKNIVAKRAIKPIT 183

Query: 187 TTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           TT +L  +I++ +  F++    HPA +SFQA+RI VN+E+E L + L  A + LK GG +
Sbjct: 184 TTFELVDIIKEAIPAFARRTGGHPAKKSFQAIRIAVNDELEVLEKSLLDAIEILKPGGRI 243

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
            V++F SLED++VKK F   S   +        ++     + I++K +V T +++  N R
Sbjct: 244 CVITFQSLEDKIVKKIFKKYSDVDIPRGMPQIPDSLRPTLKIISRKPIVATDKELEENNR 303

Query: 306 SRSAKLRAGMR 316
           S SAKLR   +
Sbjct: 304 SHSAKLRVAEK 314


>gi|23098917|ref|NP_692383.1| hypothetical protein OB1462 [Oceanobacillus iheyensis HTE831]
 gi|22777145|dbj|BAC13418.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 329

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 112/313 (35%), Positives = 166/313 (53%), Gaps = 9/313 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVS 72
            + +H  VL E+ I  L   P  + +D T G GG+S            + A D+D  A++
Sbjct: 4   EMFEHYSVLKEESIKGLAIKPDGIYVDCTTGGGGHSLEIASRLNENGQLFAFDQDKDALA 63

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK 129
             ++ +  Y ++    Q+ F  L++ +   G   VDG++FDLGVSS Q+D GDRGFS+  
Sbjct: 64  AARDRLSTYADRIVFVQSNFRGLEEQLKKHGIEQVDGILFDLGVSSPQLDRGDRGFSYNH 123

Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
              LDMRM  S  +SA +VVN+ + + L  I    GEEK + +IA  I   R+    +TT
Sbjct: 124 DALLDMRMDQSQHLSAYEVVNEWSYERLVSIFFSYGEEKFSKQIARKIEAYREQQDIKTT 183

Query: 189 QDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
             L  +I+  +   ++    HPA R FQALRI VN+E+E     L  A + +   G + V
Sbjct: 184 HQLVEIIKDAIPAPARRKGGHPAKRIFQALRIAVNDELEVFNNALHQAARLIAVNGRIAV 243

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           ++FHSLEDR+ K+ F   S      RH  I   +H A F+ +T+K +     ++  NRRS
Sbjct: 244 ITFHSLEDRICKQAFKKWSTDKPTPRHLPIVPESHQAPFKLVTRKPITADTSELDENRRS 303

Query: 307 RSAKLRAGMRTVE 319
           RSAKLR   +  E
Sbjct: 304 RSAKLRVIEKVSE 316


>gi|312871981|ref|ZP_07732063.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LEAF
           2062A-h1]
 gi|311092558|gb|EFQ50920.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LEAF
           2062A-h1]
          Length = 315

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 111/311 (35%), Positives = 171/311 (54%), Gaps = 13/311 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76
            H  VLL + I  LN     V +DATFG GG++    K     ++I  D+D +A+   ++
Sbjct: 4   KHYSVLLHETIDNLNLKNDGVYVDATFGGGGHASYLLKQLSNGHLIGFDQDEYAIELAKK 63

Query: 77  TM-----RDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSF 127
           +       + K + SL    F  LQ  +       G+DG+ +DLGVSS Q D  +RGFS+
Sbjct: 64  SFSEVLKANSKPKLSLVHDNFGNLQQNLAKLGFIDGIDGIYYDLGVSSPQFDQPERGFSY 123

Query: 128 QKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           + +  LDMRM  +  + A  +VN  + K+L+ IL   G+EK A +IA  IV +R   P  
Sbjct: 124 RFNARLDMRMDQTKDLDAYKIVNTWSQKELSNILFKYGDEKYARQIAKNIVAKRAIKPIT 183

Query: 187 TTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           TT +L  +I++ +  F++    HPA +SFQA+RI VN+E+E L + L  A + LK GG +
Sbjct: 184 TTFELVDIIKEAIPAFARRTGGHPAKKSFQAIRIAVNDELEVLEKSLLDAIEILKPGGRI 243

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
            V++F SLED++VKK F   S   +        ++     + I++K +V T +++  N R
Sbjct: 244 CVITFQSLEDKIVKKIFKKYSDVDIPRGMPQIPDSLKPTLKIISRKPIVATNKELEENNR 303

Query: 306 SRSAKLRAGMR 316
           S SAKLR   +
Sbjct: 304 SHSAKLRVAEK 314


>gi|268319710|ref|YP_003293366.1| S-adenosyl-methyltransferase MraW [Lactobacillus johnsonii FI9785]
 gi|262398085|emb|CAX67099.1| S-adenosyl-methyltransferase MraW [Lactobacillus johnsonii FI9785]
          Length = 340

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 111/321 (34%), Positives = 173/321 (53%), Gaps = 13/321 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDR 66
           M+S+       H  VLL + I  LNP  G + +DATFG GG++R          VI  D+
Sbjct: 19  MTSSYKIMKFKHKSVLLHETIDNLNPKDGGLYVDATFGGGGHARYLLSKLNKGTVIGFDQ 78

Query: 67  DPFAVSCGQETMRD-----YKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQ 117
           D +A+S  +E+         + +  L    F  L++ + +     G+DG+ +DLGVSS Q
Sbjct: 79  DEYAISMAKESFAKELQVGAEPRLMLVHDNFCHLKENLVELGISDGIDGIYYDLGVSSPQ 138

Query: 118 IDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
            D  +RGFS++    LDMRM  S  + A  +VN  + K+L+ +L   G+EK + +IA  I
Sbjct: 139 FDQPERGFSYRFDARLDMRMDQSQELDAYTMVNTWSQKELSDVLYKYGDEKFSRQIARKI 198

Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           V RR+  P  TT DL  +I+  +   ++ +  HPA +SFQA+R+ VNNE+  L + L  A
Sbjct: 199 VDRRKEKPIVTTFDLVDVIKDAIPAYARRSGGHPAKKSFQAIRVAVNNELVVLQESLEEA 258

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295
            K LK GG + V++F S ED++VKK F   S   +     +         + I++K ++ 
Sbjct: 259 IKLLKPGGRISVITFQSHEDKIVKKIFKKYSEVEIPRGMPMVPADSKPTLRLISRKPIMA 318

Query: 296 TQEDVAFNRRSRSAKLRAGMR 316
           + +++  N RS SAKLR   +
Sbjct: 319 SSDELEENNRSHSAKLRVAEK 339


>gi|312873217|ref|ZP_07733273.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LEAF
           2052A-d]
 gi|312874604|ref|ZP_07734628.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LEAF
           2053A-b]
 gi|325911728|ref|ZP_08174135.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners UPII 143-D]
 gi|311089834|gb|EFQ48254.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LEAF
           2053A-b]
 gi|311091228|gb|EFQ49616.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LEAF
           2052A-d]
 gi|325476494|gb|EGC79653.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners UPII 143-D]
          Length = 317

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 111/311 (35%), Positives = 171/311 (54%), Gaps = 13/311 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76
            H  VLL + I  LN     V +DATFG GG++    K     ++I  D+D +A+   ++
Sbjct: 6   KHYSVLLHETIDNLNLKNDGVYVDATFGGGGHASYLLKQLSNGHLIGFDQDEYAIELAKK 65

Query: 77  TM-----RDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSF 127
           +       + K + SL    F  LQ  +       G+DG+ +DLGVSS Q D  +RGFS+
Sbjct: 66  SFSEVLKANSKPKLSLVHDNFGNLQQNLAKLGFIDGIDGIYYDLGVSSPQFDQPERGFSY 125

Query: 128 QKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           + +  LDMRM  +  + A  +VN  + K+L+ IL   G+EK A +IA  IV +R   P  
Sbjct: 126 RFNARLDMRMDQTKDLDAYKIVNTWSQKELSNILFKYGDEKYARQIAKNIVAKRAIKPIT 185

Query: 187 TTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           TT +L  +I++ +  F++    HPA +SFQA+RI VN+E+E L + L  A + LK GG +
Sbjct: 186 TTFELVDIIKEAIPAFARRTGGHPAKKSFQAIRIAVNDELEVLEKSLLDAIEILKPGGRI 245

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
            V++F SLED++VKK F   S   +        ++     + I++K +V T +++  N R
Sbjct: 246 CVITFQSLEDKIVKKIFKKYSDVDIPRGMPQIPDSLKPTLKIISRKPIVATNKELEENNR 305

Query: 306 SRSAKLRAGMR 316
           S SAKLR   +
Sbjct: 306 SHSAKLRVAEK 316


>gi|225568665|ref|ZP_03777690.1| hypothetical protein CLOHYLEM_04743 [Clostridium hylemonae DSM
           15053]
 gi|225162593|gb|EEG75212.1| hypothetical protein CLOHYLEM_04743 [Clostridium hylemonae DSM
           15053]
          Length = 311

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 102/307 (33%), Positives = 169/307 (55%), Gaps = 9/307 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
           +H  VLL++ I  LN  P    +D T G GG++   C+   N   ++ +D+D  A++   
Sbjct: 4   EHKSVLLDETINGLNIRPDGTYVDGTLGGGGHAYEICRHLGNKGSIVGIDQDAAAITAAG 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             ++D+ E+ ++ ++ +  ++  +   G   VDG+V DLGVSS Q+D  +RGFS+++  P
Sbjct: 64  ARLKDFGEKVTIVRSNYCDMKSQLHKLGIDRVDGIVLDLGVSSYQLDTAERGFSYREDAP 123

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM     ++A D+VN  +  DL R++   GE+K A  IA  I   R+    +TT  L
Sbjct: 124 LDMRMDTRQKMTARDIVNDYSEMDLYRVIRDYGEDKFAKNIAKHIAAARRERSIETTGQL 183

Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           + +I++ +    +    HP+ R+FQA+RI +N E+E L   L      LK GG L +++F
Sbjct: 184 TEIIRQAIPMKYQKKSGHPSKRTFQAIRIELNRELEVLRDSLDEMIDLLKPGGRLCIITF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  F              +      +    +T+K ++P +E++ +N R++SA
Sbjct: 244 HSLEDRIVKSAFKKNENPCTCPSDFPVCVCGKESKGSILTRKPILPGEEELEYNSRAKSA 303

Query: 310 KLRAGMR 316
           KLR   R
Sbjct: 304 KLRIFER 310


>gi|325679058|ref|ZP_08158652.1| S-adenosyl-methyltransferase MraW [Ruminococcus albus 8]
 gi|324109182|gb|EGC03404.1| S-adenosyl-methyltransferase MraW [Ruminococcus albus 8]
          Length = 319

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 115/311 (36%), Positives = 169/311 (54%), Gaps = 8/311 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77
           HVPVLLE+ I  L+  P  +  D T G  G+S+   K      +I++DRDP AV+   E 
Sbjct: 5   HVPVLLEECIEGLDIKPDGIYCDGTAGGAGHSKEIAKRLTTGRLISVDRDPEAVAVATER 64

Query: 78  MRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +       ++ +  +S+L +    +   G DG++ DLGVSS Q+D  +RGFS+    PLD
Sbjct: 65  LAGLPA--TVVRGNYSELDEIFERLGLSGADGILMDLGVSSYQLDNAERGFSYHADAPLD 122

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRMS  G+SA DVVN  + K L RI+   GEEK +  IA  IV+ RQ  P +TT +L+ +
Sbjct: 123 MRMSSEGLSARDVVNGYDEKTLARIIFEYGEEKYSRSIARRIVEARQVRPIETTLELAEI 182

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           I+  V        +P  ++FQA+RI VN E+E L+  L  A   L  GG L +++FHSLE
Sbjct: 183 IKTGVPQKVRREKNPCKKTFQAIRIEVNAELEHLSVALDKAFDLLNVGGRLCIITFHSLE 242

Query: 255 DRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           DRLVK+ F       +      +         + +T+K + PT+ +   N+R+ SAKLR 
Sbjct: 243 DRLVKQRFRGFCQGCVCPPDFPVCVCGRTPRGRLVTRKPIEPTERENTENKRAHSAKLRI 302

Query: 314 GMRTVERSIED 324
             +  E    +
Sbjct: 303 IEKIKEEKDPN 313


>gi|227529006|ref|ZP_03959055.1| S-adenosyl-methyltransferase [Lactobacillus vaginalis ATCC 49540]
 gi|227351018|gb|EEJ41309.1| S-adenosyl-methyltransferase [Lactobacillus vaginalis ATCC 49540]
          Length = 316

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 117/314 (37%), Positives = 177/314 (56%), Gaps = 13/314 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73
           T   HV VLL + +A LN  P    +DAT G GG+S +         + + D+D  A+  
Sbjct: 2   TEFKHVTVLLNEAVAGLNIRPDGTYVDATLGGGGHSSAILNQLTTGRLYSFDQDQTAIRY 61

Query: 74  GQETMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQ 128
            Q+ ++ +    +  L +  F  L   +   GV   DG+V+DLGVSS Q D   RGFS++
Sbjct: 62  NQQHLKKFIDDGRSILIEDNFRNLGTALAKNGVKSVDGIVYDLGVSSPQFDDAQRGFSYK 121

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
              PLDMRM+    +SA +VVN+   + L +IL   GEE+ A +IA  I +RR+S P +T
Sbjct: 122 LDAPLDMRMNQQQALSAMNVVNEWPYEKLVKILYRYGEERFAKQIARKIERRRESKPIKT 181

Query: 188 TQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T +L  +I++ +  + + +  HPA ++FQA+RI VN+E+  L   L  A + L  GG + 
Sbjct: 182 TFELVDVIKEAIPAAARRHGGHPAKKTFQAIRIAVNDELGALEDSLEQALELLNVGGRIS 241

Query: 247 VVSFHSLEDRLVKKFFASR---SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
           V++F SLEDRLVK  F  +   + ++     +IP    P  F+ I KK ++P+QE++A N
Sbjct: 242 VITFQSLEDRLVKTMFHEKVSLADELPPGLPVIPPEMQPK-FKLINKKPILPSQEELANN 300

Query: 304 RRSRSAKLRAGMRT 317
            R+ SAKLR   R 
Sbjct: 301 HRAHSAKLRIIERI 314


>gi|315653716|ref|ZP_07906636.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Lactobacillus iners ATCC 55195]
 gi|315489078|gb|EFU78720.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Lactobacillus iners ATCC 55195]
          Length = 315

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 112/311 (36%), Positives = 172/311 (55%), Gaps = 13/311 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQE 76
            H  VLL + I  LN     V +DATFG GG++    K  S  ++I  D+D +A+   ++
Sbjct: 4   KHYSVLLHETIDNLNLKSDGVYVDATFGGGGHASYLLKQLSNVHLIGFDQDEYAIELAKK 63

Query: 77  TM-----RDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSF 127
           +       + K + SL    F  LQ  +       G+DG+ +DLGVSS Q D  +RGFS+
Sbjct: 64  SFSEVLKANSKPKLSLVHDNFGNLQQNLAKLGFIDGIDGIYYDLGVSSPQFDQPERGFSY 123

Query: 128 QKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           + +  LDMRM  +  + A  +VN  + K+L+ IL   G+EK A +IA  IV +R   P  
Sbjct: 124 RFNARLDMRMDQTKDLDAYKIVNTWSQKELSNILFKYGDEKYARQIAKNIVAKRAIKPIT 183

Query: 187 TTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           TT +L  +I++ +  F++    HPA +SFQA+RI VN+E+E L + L  A + LK GG +
Sbjct: 184 TTFELVDIIKEAIPAFARRTGGHPAKKSFQAIRIAVNDELEVLEKSLLDAIEILKPGGRI 243

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
            V++F SLED++VKK F   S   +        ++     + I++K +V T +++  N R
Sbjct: 244 CVITFQSLEDKIVKKIFKKYSDVDIPRGMPQIPDSLKPTLKIISRKPIVATNKELEENNR 303

Query: 306 SRSAKLRAGMR 316
           S SAKLR   +
Sbjct: 304 SHSAKLRVAEK 314


>gi|209550182|ref|YP_002282099.1| S-adenosyl-methyltransferase MraW [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|262825400|sp|B5ZWK2|RSMH_RHILW RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|209535938|gb|ACI55873.1| S-adenosyl-methyltransferase MraW [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 341

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 177/323 (54%), Positives = 228/323 (70%), Gaps = 1/323 (0%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+PVLL++V++ L PAPGK+ILD TFGAGGYS +    G+ VIALDRDP A++ GQ  + 
Sbjct: 19  HIPVLLDEVLSALAPAPGKLILDGTFGAGGYSSAILAAGAEVIALDRDPTAIASGQAMVA 78

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
            +  +  L  + FS L D+ P  G+DGVV D+GVSSMQID  +RGFSFQK+GPLDMRMS 
Sbjct: 79  AHGGRLKLVHSQFSHLADHAPQGGLDGVVLDIGVSSMQIDEAERGFSFQKNGPLDMRMSA 138

Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199
           +G+SA+DVVN+A V DL RI   LGEE QA RIAHAI KRR+  PF+TT+DL+ LI+   
Sbjct: 139 AGVSAADVVNRAKVADLIRIFHFLGEESQAPRIAHAIEKRREEKPFETTRDLAGLIELVT 198

Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259
                ++IHPATR FQALRIFVN+E+ ELAQ L +AE ALK GG L+VV+FHSLEDR+VK
Sbjct: 199 PRKMKDKIHPATRVFQALRIFVNDELGELAQALFAAEAALKPGGRLVVVTFHSLEDRIVK 258

Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319
           KFF+ R+GK    RH+  ++   A F +I K +V  ++ +   N R+RSAKLRAG+RT  
Sbjct: 259 KFFSDRAGKASGSRHLPVAHERAATFAAIGKPMVSASEAEAEINPRARSAKLRAGLRTEA 318

Query: 320 RS-IEDDSFVHLPRLPTLSQFRG 341
            +   D S    P L +L +  G
Sbjct: 319 AAEAADMSLFGFPNLASLGKLGG 341


>gi|291530304|emb|CBK95889.1| S-adenosyl-methyltransferase MraW [Eubacterium siraeum 70/3]
          Length = 308

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 116/303 (38%), Positives = 174/303 (57%), Gaps = 8/303 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77
           H+PVLL + I  L+  P  + +D T G  G+S    K      +I  DRDP AV   +E 
Sbjct: 7   HIPVLLSETIESLDIKPDGIYVDCTTGFAGHSSEIAKRLTTGRLIGFDRDPDAVKAAEEK 66

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++DY    +L    FS   + + + GV   DGV+ DLGVSS Q+D  +RGFS+ +  PLD
Sbjct: 67  LKDYPH--TLINRKFSTFDESLDEIGVGKVDGVLMDLGVSSYQLDTAERGFSYHEDAPLD 124

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRMS SG+SA DVVN+ + + L +IL   GEEK A  I   I+K R++AP +TT +L+ +
Sbjct: 125 MRMSKSGLSAYDVVNEYSKEQLEKILFEYGEEKFAHGIVSGILKARETAPIKTTLELAEI 184

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           +++ V        +P  ++FQA+RI VN E++EL +G+  A + L AGG L +++FHS+E
Sbjct: 185 VKRNVPLKVRKEKNPCKKTFQAIRIEVNGELDELKKGMSEAFERLSAGGRLAIITFHSIE 244

Query: 255 DRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           DR+VK  F              +         +++ +K V  ++E++  N RSRSAKLR 
Sbjct: 245 DRIVKNTFREYCTGCTCPPDFPVCVCGKKPRGRTVYRKTVTASEEELEVNNRSRSAKLRV 304

Query: 314 GMR 316
             +
Sbjct: 305 IEK 307


>gi|33301401|sp|Q8ER53|RSMH_OCEIH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 325

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 112/312 (35%), Positives = 166/312 (53%), Gaps = 9/312 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSC 73
           + +H  VL E+ I  L   P  + +D T G GG+S            + A D+D  A++ 
Sbjct: 1   MFEHYSVLKEESIKGLAIKPDGIYVDCTTGGGGHSLEIASRLNENGQLFAFDQDKDALAA 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            ++ +  Y ++    Q+ F  L++ +   G   VDG++FDLGVSS Q+D GDRGFS+   
Sbjct: 61  ARDRLSTYADRIVFVQSNFRGLEEQLKKHGIEQVDGILFDLGVSSPQLDRGDRGFSYNHD 120

Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM  S  +SA +VVN+ + + L  I    GEEK + +IA  I   R+    +TT 
Sbjct: 121 ALLDMRMDQSQHLSAYEVVNEWSYERLVSIFFSYGEEKFSKQIARKIEAYREQQDIKTTH 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L  +I+  +   ++    HPA R FQALRI VN+E+E     L  A + +   G + V+
Sbjct: 181 QLVEIIKDAIPAPARRKGGHPAKRIFQALRIAVNDELEVFNNALHQAARLIAVNGRIAVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K+ F   S      RH  I   +H A F+ +T+K +     ++  NRRSR
Sbjct: 241 TFHSLEDRICKQAFKKWSTDKPTPRHLPIVPESHQAPFKLVTRKPITADTSELDENRRSR 300

Query: 308 SAKLRAGMRTVE 319
           SAKLR   +  E
Sbjct: 301 SAKLRVIEKVSE 312


>gi|229019122|ref|ZP_04175956.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus AH1273]
 gi|229025365|ref|ZP_04181783.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus AH1272]
 gi|228735950|gb|EEL86527.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus AH1272]
 gi|228742138|gb|EEL92304.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus AH1273]
          Length = 302

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 106/301 (35%), Positives = 163/301 (54%), Gaps = 9/301 (2%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDY 81
           +++ +  L+  P    +D T G GG+S         G  +IA D+D  A+   +E    Y
Sbjct: 1   MKETVDGLDIKPSGTYVDCTLGGGGHSSYLLSQLTDGGKLIAFDQDEIAIQNAKEKFSSY 60

Query: 82  KEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138
            EQF   ++ F  L + + + G   VDG++FDLGVSS Q+D  +RGFS+    PLDMRM 
Sbjct: 61  GEQFVTVKSNFRYLSEKLHELGITEVDGILFDLGVSSPQLDTPERGFSYHHDAPLDMRMD 120

Query: 139 CSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK 197
               ++A DVVN  + + L RI    GEEK + +I   I   R++   +TT +L  LI++
Sbjct: 121 QDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQIVRKIEAYRENKAIETTGELVELIKE 180

Query: 198 TVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
            +   ++    HPA R FQA+RI VN+E++   + L SA   +K GG + V++FHSLEDR
Sbjct: 181 GIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIDMVKPGGRVSVITFHSLEDR 240

Query: 257 LVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           + K  F   S    +     I  +      + IT+K ++P+  ++  N R+RSAKLR   
Sbjct: 241 ICKTTFKRNSTTPQLPPGLPIIPDEFKPKLKLITRKPILPSDIELEENNRARSAKLRIAE 300

Query: 316 R 316
           +
Sbjct: 301 K 301


>gi|315652174|ref|ZP_07905171.1| exopolyphosphatase [Eubacterium saburreum DSM 3986]
 gi|315485569|gb|EFU75954.1| exopolyphosphatase [Eubacterium saburreum DSM 3986]
          Length = 311

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 106/306 (34%), Positives = 171/306 (55%), Gaps = 8/306 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76
           +H  VLL++VI  LN  P    +D T G  G++    K   G  +I +D+D  A+    E
Sbjct: 4   NHKSVLLDEVIESLNIKPDGYYVDGTLGGAGHALEVIKRLKGGRLIGIDQDADAIKAATE 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + DYK +  + +  +  ++D +  +G   VDG+  DLGVSS Q+D  DRGF+++   PL
Sbjct: 64  RLIDYKNRVIIVRDNYVNIEDILKREGIDKVDGIYVDLGVSSYQLDTADRGFTYRFDAPL 123

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM   + + ASD+VN  +  +L  ++   GE++ A  IA  IV+ R     +TT +L 
Sbjct: 124 DMRMDDRNELKASDIVNNYSEAELFHVIRDYGEDRFAKNIAKHIVEYRNKKKIETTFELV 183

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  +    +    HPA R+FQA+RI +N E+E L   +    + LK GG L V++FH
Sbjct: 184 DIIKSAIPMKIQVTGGHPAKRTFQAIRIELNKELEVLKDSIDVMIELLKPGGRLSVITFH 243

Query: 252 SLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK+ F       +   +  +    + +  + IT+K V+P++E++  N R++SAK
Sbjct: 244 SLEDRIVKQAFKKAESPCVCPKKFPVCVCGNKSKGRVITRKAVLPSKEELEENSRAKSAK 303

Query: 311 LRAGMR 316
           LR   +
Sbjct: 304 LRVFEK 309


>gi|42518892|ref|NP_964822.1| S-adenosyl-methyltransferase MraW [Lactobacillus johnsonii NCC 533]
 gi|41583178|gb|AAS08788.1| S-adenosyl-methyltransferase MraW [Lactobacillus johnsonii NCC 533]
          Length = 322

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 110/321 (34%), Positives = 173/321 (53%), Gaps = 13/321 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDR 66
           M+S+       H  VLL + I  LNP  G + +DATFG GG++R          VI  D+
Sbjct: 1   MTSSYKIMKFKHKSVLLHETIDNLNPKDGGLYVDATFGGGGHARYLLSKLNKGTVIGFDQ 60

Query: 67  DPFAVSCGQETMRD-----YKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQ 117
           D +A+S  +E+         + +  L    F  L++ + +     G+DG+ +DLGVSS Q
Sbjct: 61  DEYAISMAKESFAKELQVGAEPRLMLVHDNFCHLKENLVELGISDGIDGIYYDLGVSSPQ 120

Query: 118 IDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
            D  +RGFS++    LDMRM  S  + A  +VN  + K+L+ +L   G+EK + +IA  I
Sbjct: 121 FDQPERGFSYRFDARLDMRMDQSQELDAYTIVNTWSQKELSDVLYKYGDEKFSRQIARKI 180

Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           V RR+  P  TT DL  +I+  +   ++ +  HPA +SFQA+R+ VN+E+  L + L  A
Sbjct: 181 VDRRKEKPIVTTFDLVDVIKDAIPAYARRSGGHPAKKSFQAIRVAVNDELGVLQESLEEA 240

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295
            K LK GG + V++F S ED++VKK F   S   +     +         + I++K ++ 
Sbjct: 241 IKLLKPGGRISVITFQSHEDKIVKKIFKKYSEVEIPRGMPMVPADSKPTLRLISRKPIMA 300

Query: 296 TQEDVAFNRRSRSAKLRAGMR 316
           + +++  N RS SAKLR   +
Sbjct: 301 SSDELEENNRSHSAKLRVAEK 321


>gi|306844338|ref|ZP_07476930.1| S-adenosyl-methyltransferase MraW [Brucella sp. BO1]
 gi|306275410|gb|EFM57151.1| S-adenosyl-methyltransferase MraW [Brucella sp. BO1]
          Length = 346

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 164/326 (50%), Positives = 216/326 (66%), Gaps = 6/326 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           HVPVL+ +VI  L PAPG VI+D TFGAGGY+R   + G++VIA+D DP A+  G+   +
Sbjct: 18  HVPVLIAEVIDALKPAPGAVIVDGTFGAGGYTRRILETGADVIAIDCDPTAIEAGRAMEK 77

Query: 80  DYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++  + +L ++ FS L + V         VDGVV D+GVSSMQID  +RGFSFQK GPLD
Sbjct: 78  EFPGRLNLVESRFSALDEAVARMSGAGKKVDGVVLDIGVSSMQIDEAERGFSFQKDGPLD 137

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRMS  G SA+D VN+    DL RI   LGEE+ A RIA  I KRR + PF  T DL++ 
Sbjct: 138 MRMSSRGPSAADAVNRLKTGDLARIFNFLGEERHAGRIARMIEKRRAAKPFTRTLDLANA 197

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           I+  V  +  +RIHPATR FQALR++VN+E+ ELA+ L +AE+ +K GG L++V+FHSLE
Sbjct: 198 IETLVGRNPKDRIHPATRVFQALRVYVNDELGELARALLAAERIIKPGGRLVIVTFHSLE 257

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           DR+VK+FFA R+G     RHM  ++     F    K  V PT E+   N R+RSAKLRAG
Sbjct: 258 DRMVKRFFADRAGGSAGSRHMPETHMRLPSFTPAVKGAVGPTPEEEERNPRARSAKLRAG 317

Query: 315 MRTVERSIEDD-SFVHLPRLPTLSQF 339
           +RT    +EDD S   LP+LP  ++ 
Sbjct: 318 IRTENPPLEDDLSLFGLPKLPETNEL 343


>gi|254500690|ref|ZP_05112841.1| S-adenosyl-methyltransferase MraW [Labrenzia alexandrii DFL-11]
 gi|222436761|gb|EEE43440.1| S-adenosyl-methyltransferase MraW [Labrenzia alexandrii DFL-11]
          Length = 346

 Score =  382 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 160/327 (48%), Positives = 218/327 (66%), Gaps = 7/327 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           HVPVLL +V+  L+P PG+V++D TFGAGGYSR   +  + V+ +DRDP A++ GQE + 
Sbjct: 19  HVPVLLNEVLEWLDPQPGEVMVDGTFGAGGYSRKLLERDATVVGIDRDPDAIAGGQELVT 78

Query: 80  DYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
               +  L    F+ L+ +  +    GVDGVV DLGVSSMQ+D  +RGFSF + GPLDMR
Sbjct: 79  QSDGRLILVPGQFADLETHARESGFDGVDGVVLDLGVSSMQLDQAERGFSFLRDGPLDMR 138

Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
           M  +G SA+DVVN+  V+DL RI+G+LGEEK+A  +AHAI   R+  PF  T +L++LI+
Sbjct: 139 MEQAGPSAADVVNELPVRDLIRIIGVLGEEKRAPSVAHAIDNARKEKPFSRTLELANLIE 198

Query: 197 KTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           K +    K  +IHPATR+FQALRI+VN E+ + AQ L +AE+ LK GG L++VSFHSLED
Sbjct: 199 KVLGRSPKKAQIHPATRTFQALRIYVNGELHQAAQALGAAERILKPGGRLVLVSFHSLED 258

Query: 256 RLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           R+VK+FF  R+  +    RHM      PA F+ +T+K V     +   N R+RSAKLRAG
Sbjct: 259 RIVKRFFQDRTKTRGGGSRHMPEEEVPPATFEILTRKAVEARDMETDANPRARSAKLRAG 318

Query: 315 MRTVERSIEDDSFVHLPRLPTLSQFRG 341
            RT   + E D  +H+  +P L+ F G
Sbjct: 319 RRTEAPARELD--IHVAGVPRLAAFHG 343


>gi|153009066|ref|YP_001370281.1| S-adenosyl-methyltransferase MraW [Ochrobactrum anthropi ATCC
           49188]
 gi|262824676|sp|A6WZP8|RSMH_OCHA4 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|151560954|gb|ABS14452.1| S-adenosyl-methyltransferase MraW [Ochrobactrum anthropi ATCC
           49188]
          Length = 347

 Score =  382 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 164/326 (50%), Positives = 214/326 (65%), Gaps = 6/326 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           HVPVL+ +VI  L P  G VI+D TFGAGGY+R   + G++VIA+DRDP A+  G+   +
Sbjct: 19  HVPVLIAEVIDALKPVSGAVIVDGTFGAGGYTRRILEAGADVIAIDRDPTAIEAGRAMEK 78

Query: 80  DYKEQFSLFQATFSQLQDYV-----PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
            +  +  L ++ FS L + V         VDGVV D+GVSSMQID  +RGFSFQK GPLD
Sbjct: 79  QFPGRLDLVESRFSALDEAVSKVKGAGSKVDGVVLDIGVSSMQIDEAERGFSFQKDGPLD 138

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRMS  G SA+DVVN+    DL RI   LGEE+ A RIA  I KRR + PF  T DL++ 
Sbjct: 139 MRMSKKGPSAADVVNRLKTGDLARIFNFLGEERHAGRIARMIDKRRTAQPFTRTLDLANA 198

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           I+  V  +  +RIHPATR FQALR++VN+E+ ELA+ L +AE+ LK GG L+VV+FHSLE
Sbjct: 199 IETLVGRNPKDRIHPATRVFQALRVYVNDELGELARALLAAERILKPGGRLVVVTFHSLE 258

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           DR+VK++FA R+G     RH+  ++     F    K  V PT E+   N R+RSAKLRAG
Sbjct: 259 DRMVKRYFADRAGGSAGSRHLPETHVRLPSFTPAVKGAVGPTAEEEERNPRARSAKLRAG 318

Query: 315 MRTVERSIEDD-SFVHLPRLPTLSQF 339
           +RT    +EDD S   LP+LP  ++ 
Sbjct: 319 IRTENPPLEDDLSLFGLPKLPETNEL 344


>gi|307944902|ref|ZP_07660239.1| S-adenosyl-methyltransferase MraW [Roseibium sp. TrichSKD4]
 gi|307771826|gb|EFO31050.1| S-adenosyl-methyltransferase MraW [Roseibium sp. TrichSKD4]
          Length = 346

 Score =  382 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 162/327 (49%), Positives = 220/327 (67%), Gaps = 7/327 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           HVPVLL+ V+  L P PG+VI+D TFGAGGYSR+  + G++VI +DRDP A++ GQ  + 
Sbjct: 19  HVPVLLDLVLEYLAPNPGEVIIDGTFGAGGYSRALLERGASVIGVDRDPDAIAGGQPLVE 78

Query: 80  DYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
               + +L    F+ L+ +    G   VDGVV DLGVSSMQ+D  +RGFSF + GPLDMR
Sbjct: 79  ASDGRLTLVPGCFADLETHARSLGHDAVDGVVLDLGVSSMQLDEAERGFSFLRDGPLDMR 138

Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
           M   G SA+DVVN+ +V+DL RI+G+LGEEK+A+ +AHAI   R+  PF  T +L++L++
Sbjct: 139 MEQEGPSAADVVNELSVRDLIRIIGVLGEEKRATTVAHAIDNARKEGPFTRTGELAALVE 198

Query: 197 KTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           K +    K  +IHPATR+FQALRI+VN E+ + AQ L +AE  LK GG L+VVSFHSLED
Sbjct: 199 KVLGRSPKKAQIHPATRTFQALRIYVNGELHQAAQALGAAENILKPGGRLVVVSFHSLED 258

Query: 256 RLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           R+VK+F A RS       RHM  +   P  F+ +T+K +  T  ++A N R+RSAKLRAG
Sbjct: 259 RIVKRFLADRSKTHAGGSRHMPETEVEPPTFELLTRKAIDGTDAEIAGNPRARSAKLRAG 318

Query: 315 MRTVERSIEDDSFVHLPRLPTLSQFRG 341
            RT   +   D  +H   +P L+ F+G
Sbjct: 319 RRTTNPARSLD--IHAAGVPRLADFKG 343


>gi|169348415|ref|ZP_02866353.1| hypothetical protein CLOSPI_00130 [Clostridium spiroforme DSM 1552]
 gi|169293884|gb|EDS76017.1| hypothetical protein CLOSPI_00130 [Clostridium spiroforme DSM 1552]
          Length = 309

 Score =  382 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 104/310 (33%), Positives = 167/310 (53%), Gaps = 10/310 (3%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74
           + DHV VLL + I  LN     + +D T G GG+S    K     ++   D+D  A+   
Sbjct: 1   MFDHVTVLLNEAIEGLNINEDGIYVDCTLGGGGHSCEILKRLTTGHLYCFDQDYTAIEAA 60

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           ++ + +  + +++  + F  +++ + +     VDG++FDLGVSS Q D G RGFS+    
Sbjct: 61  KKRLSEISDNYTIIYSNFVNIKEKLEELNVHKVDGILFDLGVSSPQFDTGSRGFSYNYDA 120

Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM  +  + A  +VN  + + L  IL    +EK A RIA  I + R + P +TT +
Sbjct: 121 RLDMRMDINNPLDAYYIVNNWSYEQLVEILFKYADEKFAKRIARKIEQARSNKPIETTFE 180

Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I++ +  + +    HPA R+FQALRI VN+E+    + L+ A   L + G + V++
Sbjct: 181 LVEIIKEAIPAAARRKGGHPAKRTFQALRIAVNDELNVFDRALKDALDLLNSKGRISVIT 240

Query: 250 FHSLEDRLVKKFFAS--RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           FHSLED++ K  F    +   V     +IP +  P  ++ I KK +V + E++  N R+ 
Sbjct: 241 FHSLEDKICKYTFNDVTKLKDVPPGLPVIPEHLLPK-YKLINKKAIVASDEELEMNHRAH 299

Query: 308 SAKLRAGMRT 317
           SAKLR   R 
Sbjct: 300 SAKLRIIERV 309


>gi|325912968|ref|ZP_08175341.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners UPII 60-B]
 gi|325477648|gb|EGC80787.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners UPII 60-B]
          Length = 317

 Score =  382 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 111/311 (35%), Positives = 171/311 (54%), Gaps = 13/311 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76
            H  VLL + I  LN     V +DATFG GG++    K     ++I  D+D +A+   ++
Sbjct: 6   KHYSVLLHETIDNLNLKNDGVYVDATFGGGGHASYLLKQLSNGHLIGFDQDEYAIELAKK 65

Query: 77  TM-----RDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSF 127
           +       + K + SL    F  LQ  +       G+DG+ +DLGVSS Q D  +RGFS+
Sbjct: 66  SFSEVLKANSKPKLSLVHDNFGNLQQNLAKLGFIDGIDGIYYDLGVSSPQFDQPERGFSY 125

Query: 128 QKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           + +  LDMRM  +  + A  +VN  + K+L+ IL   G+EK A +IA  IV +R   P  
Sbjct: 126 RFNARLDMRMDQTKDLDAYKIVNTWSQKELSNILFKYGDEKYARQIAKNIVAKRAIKPIT 185

Query: 187 TTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           TT +L  +I++ +  F++    HPA +SFQA+RI VN+E+E L + L  A + LK GG +
Sbjct: 186 TTFELVDIIKEAIPAFARRTGGHPAKKSFQAIRIAVNDELEVLEKSLLEAIEILKPGGRI 245

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
            V++F SLED++VKK F   S   +        ++     + I++K +V T +++  N R
Sbjct: 246 CVITFQSLEDKIVKKIFKKYSDVDIPRGMPQIPDSLKPTLKIISRKPIVATNKELEENNR 305

Query: 306 SRSAKLRAGMR 316
           S SAKLR   +
Sbjct: 306 SHSAKLRVAEK 316


>gi|288553170|ref|YP_003425105.1| S-adenosyl-methyltransferase MraW [Bacillus pseudofirmus OF4]
 gi|288544330|gb|ADC48213.1| S-adenosyl-methyltransferase MraW [Bacillus pseudofirmus OF4]
          Length = 311

 Score =  382 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 108/309 (34%), Positives = 166/309 (53%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  HV VL E+ +  L   P  + +D T G  G+S    +      ++ A D+D  A+S 
Sbjct: 1   MFTHVTVLKEESVNGLAIKPDGIYVDCTLGGAGHSSLILEQLNDEGHLYAFDQDDTALSN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E +  YK +F+L ++ F  L++ +   G   VDGV+FDLGVSS Q+D  +RGFS+ + 
Sbjct: 61  AEEVLAPYKGKFTLIRSNFRFLREELAKHGISKVDGVLFDLGVSSPQLDEAERGFSYHQD 120

Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM  +  ++A  VVN+     L  I+   GEEK A +IA  I  RR+    +TT 
Sbjct: 121 AALDMRMDQTAPLTAHQVVNEWEFNRLVSIISRYGEEKFAKQIARKIEARREIKTIETTG 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I+  +   ++    HPA R+FQA+RI VN+E+    + L  A       G + V+
Sbjct: 181 ELVEIIKDAIPAPARRTGGHPAKRTFQAIRIAVNDELGSFEEALEDAITITNPKGRICVI 240

Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F  +S G  +     +         + IT+K +V   E++  N R+R
Sbjct: 241 TFHSLEDRLCKEIFKEKSKGPDLPPGLPVIPEGFEPELKLITRKPIVAGNEELTANNRAR 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRIAEK 309


>gi|158426170|ref|YP_001527462.1| S-adenosyl-methyltransferase MraW [Azorhizobium caulinodans ORS
           571]
 gi|263446764|sp|A8HZ68|RSMH_AZOC5 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|158333059|dbj|BAF90544.1| methyltransferase [Azorhizobium caulinodans ORS 571]
          Length = 346

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 147/328 (44%), Positives = 199/328 (60%), Gaps = 6/328 (1%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQE 76
             H+PV+L +V+A L P      LD TFGAGGY+R+  +     VIA+DRDP A++ GQ 
Sbjct: 17  ARHLPVMLAEVLAHLAPKDAGTCLDGTFGAGGYTRAILEAANGRVIAIDRDPTAIAGGQA 76

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + +   + +L    FS L     D G   +DGVV D+GVSSMQ+D  DRGFSF++ GPL
Sbjct: 77  LVEETGGRLTLVHERFSHLDQVAQDLGAAPLDGVVLDIGVSSMQLDEADRGFSFRRDGPL 136

Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           DMRM+  G SA+D+V   +  +L  ++  LGEE+ + +IA AIV  R  +P   T  L+ 
Sbjct: 137 DMRMANDGPSAADLVADLDEVELAHVIWTLGEERFSRQIARAIVNARAESPITRTTQLAD 196

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           ++ K V+ +K   +HPATR+FQALRI VN E++EL   L +AE+ LK GG L+VV+FHSL
Sbjct: 197 IVSKVVW-AKPGEMHPATRTFQALRIAVNEELQELVGALAAAERVLKPGGRLVVVTFHSL 255

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           EDR+VK F + RS    A RHM  +      F+ + K  V P  ++VA N R+RSAKLRA
Sbjct: 256 EDRIVKNFLSHRSKAPSASRHMPQAEGPAPSFRLVAKGAVEPGSDEVAGNPRARSAKLRA 315

Query: 314 GMRTVERSIEDDSFVHLPRLPTLSQFRG 341
             RT   +  D     L     LSQ RG
Sbjct: 316 AERTDAPAHPDGDLAGLLP-ADLSQRRG 342


>gi|222528776|ref|YP_002572658.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor bescii DSM
           6725]
 gi|263446717|sp|B9MQ93|RSMH_ANATD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|222455623|gb|ACM59885.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor bescii DSM
           6725]
          Length = 307

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 125/309 (40%), Positives = 190/309 (61%), Gaps = 10/309 (3%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSC 73
           + +H+PVLLE+ ++ L   P  + +DATFG GG+S+   +  SN   +IA+DRD  A+  
Sbjct: 1   MFEHIPVLLEESVSFLITNPDGIYVDATFGLGGHSKRILEKISNKGFLIAIDRDLEAIEL 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130
           G+  +  YK    +  ++FS++ + +   G+   DG++FD GVSS+Q+D  +RGFS+ K 
Sbjct: 61  GKRKLEAYK-NVKIVHSSFSKVDELLECLGIEKIDGILFDFGVSSLQLDKQERGFSYNKE 119

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM   S ++A DVVN  + +DL +I+   GEE+ A RIA AIV+RR   P +TT 
Sbjct: 120 AFLDMRMDTTSKLTAYDVVNFYSQEDLEKIIREYGEERFARRIAKAIVERRSKKPIETTT 179

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           +LSSLI   V   K+   HPA R+FQA+RI VN E++E+   L  + + L++GG +  +S
Sbjct: 180 ELSSLISSLVPRPKDGS-HPAQRTFQAIRIEVNGELDEIKIALEKSLRFLRSGGRICAIS 238

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK+FF   S + +  +   +           ITKK + P++E++  N+RS S
Sbjct: 239 FHSLEDRIVKEFFKFHSLECVCPKDIPVCRCGKKKELNIITKKPITPSKEEIESNKRSHS 298

Query: 309 AKLRAGMRT 317
           AKLR   + 
Sbjct: 299 AKLRVAEKV 307


>gi|56964129|ref|YP_175860.1| S-adenosyl-methyltransferase MraW [Bacillus clausii KSM-K16]
 gi|115311580|sp|Q5WFG1|RSMH_BACSK RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|56910372|dbj|BAD64899.1| S-adenosyl-methyltransferase MraW [Bacillus clausii KSM-K16]
          Length = 314

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 110/309 (35%), Positives = 166/309 (53%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H+ VL E+ +  L   PG V +D T G GG+S           ++ A D+D  A+S 
Sbjct: 1   MFSHITVLKEESVNGLAVKPGGVYVDCTLGGGGHSERILTALAGEGHLYAFDQDEAALSF 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKS 130
             E +  +KE  +  ++ F  +++ +  +GVD   G++FDLGVSS Q+D   RGFS+ + 
Sbjct: 61  AAEKLSRFKENITFIRSNFRHIKEELRMRGVDKVDGILFDLGVSSPQLDEASRGFSYHQD 120

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM  S  ++A +VVN      L  I+   GEEK + +IA  I   R   P +TT 
Sbjct: 121 APLDMRMDQSASLTAREVVNTWPFAKLHSIISRYGEEKFSKQIARKIEAYRLKQPIETTG 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I++ +   ++    HPA R+FQA+RI VN+E+      L    + L  GG + V+
Sbjct: 181 ELVDIIKEAIPAPARRAGGHPAKRTFQAIRIAVNDELGAFEDALTDGFELLNEGGRMAVI 240

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F  ++    +     I      A F  ITKK +V   E++  N R+R
Sbjct: 241 TFHSLEDRLCKQMFKEKTKLPDLPKGLPIIPADQKAPFALITKKPIVANDEEIKANNRAR 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRIIEK 309


>gi|27381721|ref|NP_773250.1| S-adenosyl-methyltransferase MraW [Bradyrhizobium japonicum USDA
           110]
 gi|27354890|dbj|BAC51875.1| S-adenosyl-methyltransferase [Bradyrhizobium japonicum USDA 110]
          Length = 387

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 151/327 (46%), Positives = 202/327 (61%), Gaps = 5/327 (1%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCG 74
           +   H+PVL  + I  L P  G + +DATFGAGGYSR+     G+ +IA+DRD  A++ G
Sbjct: 60  SSAPHIPVLGREAIDHLAPREGGIYVDATFGAGGYSRAILDVPGTRLIAIDRDRTAIAGG 119

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV---SSMQIDCGDRGFSFQKSG 131
            E +     + +L +  FS L D    +GVD V   +     SSMQ+D   RGFSF+  G
Sbjct: 120 AELVERSAGRLTLVEDRFSHLADVCAAQGVDAVDGVVMDVGVSSMQLDQAGRGFSFRLDG 179

Query: 132 PLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           PLDMRM  +G +A+DVV +A+  DL  I+ +LGEE+ + R+A AIV  RQ  PF TT+ L
Sbjct: 180 PLDMRMGQAGPTAADVVARASEADLADIIYLLGEERHSRRVARAIVADRQETPFTTTRAL 239

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + L+ + V  SK   IHPATR+FQALRIFVN E+EEL   L +AE+ LK GG L+VVSFH
Sbjct: 240 ADLVGRVV-RSKPGDIHPATRTFQALRIFVNEELEELQTALTAAERVLKPGGRLVVVSFH 298

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+VK F A RS      RH+         FQ +T++ VV  +++VA N R+RSAKL
Sbjct: 299 SLEDRIVKNFLAERSKTGGGSRHLPEVAQTAPSFQLLTRRPVVAGEDEVAHNPRARSAKL 358

Query: 312 RAGMRTVERSIEDDSFVHLPRLPTLSQ 338
           RA  RT   + +DD     PRL  + +
Sbjct: 359 RAAERTSAPAHKDDQSSSWPRLSDVMR 385


>gi|209884374|ref|YP_002288231.1| S-adenosyl-methyltransferase MraW [Oligotropha carboxidovorans OM5]
 gi|262824708|sp|B6JCF0|RSMH_OLICO RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|209872570|gb|ACI92366.1| S-adenosyl-methyltransferase MraW [Oligotropha carboxidovorans OM5]
          Length = 333

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 147/334 (44%), Positives = 207/334 (61%), Gaps = 9/334 (2%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRD 67
           MS+A+      H+ VL  + +  L P  G + +DATFGAGGYSR      G+ VI +DRD
Sbjct: 1   MSAAVS----RHISVLGREAVEFLAPRAGGIYVDATFGAGGYSRRILAVAGARVIGIDRD 56

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRG 124
             A++   + +   + + +L Q  FSQL +    +    VDG+V D+GVSSMQ+D  +RG
Sbjct: 57  RTAIAEAFDLVEQAEGRLTLVQDRFSQLDEVCASQNAPQVDGIVMDIGVSSMQLDRAERG 116

Query: 125 FSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           FSF++ GPLDMRM   G SA+DVV  A+ KDL  I+ I GEE+ +  +A AIV+ RQ  P
Sbjct: 117 FSFRQDGPLDMRMGQEGASAADVVAVASEKDLANIIYIFGEERHSRAVARAIVRARQEKP 176

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
             TT+ L+ ++   V+   N+ IHPATR+FQALRIFVN E++EL   L ++E+ LK GG 
Sbjct: 177 ILTTKVLADIVASVVHTRPND-IHPATRTFQALRIFVNEELDELQSALHASERTLKPGGR 235

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           L+VV+FHSLEDR+VK F  +R+ +    RHM         F+ +TK+ VV  + ++A N 
Sbjct: 236 LVVVTFHSLEDRIVKNFINARASRGGGSRHMPDVERTAPSFEILTKRPVVADENEIAANP 295

Query: 305 RSRSAKLRAGMRTVERSIEDDSFVHLPRLPTLSQ 338
           R+RSAKLRA  RT   S + D+    P L T+ +
Sbjct: 296 RARSAKLRAAERTANASHDADTSFDWPTLRTVMK 329


>gi|302871361|ref|YP_003839997.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor obsidiansis
           OB47]
 gi|302574220|gb|ADL42011.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor obsidiansis
           OB47]
          Length = 307

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 126/309 (40%), Positives = 190/309 (61%), Gaps = 10/309 (3%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSC 73
           + +H+PVLLE+ +  L   P  + +DATFG GG+S+   +  SN   +IA+DRD  A+  
Sbjct: 1   MYEHMPVLLEESVFFLVTNPDGIYVDATFGLGGHSKRILEKLSNKGFLIAIDRDLEAIEL 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130
           G+  +  +K    +  ++FS+L + +   G+   DG++FD GVSS+Q+D  +RGFS+ + 
Sbjct: 61  GKRKLEVHK-NVKIVHSSFSKLDEVLKGLGIEKIDGILFDFGVSSLQLDKQERGFSYNQE 119

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM   S ++A DVVN  + KDL RI+   GEE+ A RIA AIV+RR   P +TT 
Sbjct: 120 AFLDMRMDTTSKLTAYDVVNFYSEKDLERIIREYGEERFARRIAKAIVERRSKKPIETTT 179

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           +LS+LI   V   K+   HPA R+FQA+RI VN+E++E+   L  + + L++GG +  +S
Sbjct: 180 ELSNLISSLVPRPKDGS-HPAQRTFQAIRIEVNSELDEIKIALEKSLRFLRSGGRICAIS 238

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK+FF   S + +  +   I           ITKK + P++E++  N+RS S
Sbjct: 239 FHSLEDRIVKEFFKFHSLECVCPKDIPICVCGKKKELNIITKKPITPSKEEIEKNKRSHS 298

Query: 309 AKLRAGMRT 317
           AKLR   + 
Sbjct: 299 AKLRVAEKV 307


>gi|229013103|ref|ZP_04170268.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           mycoides DSM 2048]
 gi|229134728|ref|ZP_04263537.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus BDRD-ST196]
 gi|228648774|gb|EEL04800.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           cereus BDRD-ST196]
 gi|228748357|gb|EEL98217.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Bacillus
           mycoides DSM 2048]
          Length = 302

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 106/301 (35%), Positives = 163/301 (54%), Gaps = 9/301 (2%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDY 81
           +++ +  L+  P    +D T G GG+S         G  +IA D+D  A+   +E    Y
Sbjct: 1   MKETVDGLDIKPSGTYVDCTLGGGGHSSYLLSQLTDGGKLIAFDQDEIAIQNAKEKFSSY 60

Query: 82  KEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138
            EQF   ++ F  L + + + G   VDG++FDLGVSS Q+D  +RGFS+    PLDMRM 
Sbjct: 61  GEQFVTVKSNFRYLSEKLHELGITEVDGILFDLGVSSPQLDTPERGFSYHHDAPLDMRMD 120

Query: 139 CSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK 197
               ++A DVVN  + + L RI    GEEK + +I   I   R++   +TT +L  LI++
Sbjct: 121 QDAPLTAYDVVNSWSYEQLVRIFFQYGEEKFSKQITRKIEAYRENKAIETTGELVELIKE 180

Query: 198 TVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
            +   ++    HPA R FQA+RI VN+E++   + L SA   +K GG + V++FHSLEDR
Sbjct: 181 GIPAPARRTGGHPAKRVFQAIRIAVNDELKVFEEALESAIDMVKPGGRVSVITFHSLEDR 240

Query: 257 LVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           + K  F   S    +     I  +      + IT+K ++P+  ++  N R+RSAKLR   
Sbjct: 241 ICKTTFKRNSTTPQLPQGLPIIPDEFKPKLKLITRKPILPSDIELEENNRARSAKLRIAE 300

Query: 316 R 316
           +
Sbjct: 301 K 301


>gi|315304096|ref|ZP_07874497.1| S-adenosyl-methyltransferase MraW [Listeria ivanovii FSL F6-596]
 gi|313627537|gb|EFR96269.1| S-adenosyl-methyltransferase MraW [Listeria ivanovii FSL F6-596]
          Length = 312

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 101/311 (32%), Positives = 174/311 (55%), Gaps = 9/311 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H  VLL + + +L   P  + +DAT G  G+S           ++ A D+D  A+  
Sbjct: 1   MFKHETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +  +  Y ++ +  ++ F  +++ + ++G   VDG+++DLGVSS Q+D  +RGFS+ + 
Sbjct: 61  AKIKLAAYSDKVTFVKSNFRYMKEALNERGISEVDGILYDLGVSSPQLDERERGFSYHQD 120

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM     ++A  VVN+ + +DL RI    GEEK + +IA  I +RR+  P +TT 
Sbjct: 121 AALDMRMDREQELTAKIVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTG 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I+  +   ++    HP  R+FQA+RI VN+E+  +   L  A   +  GG + V+
Sbjct: 181 ELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLITPGGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F   + G  + +   +  + +   F+  T+K +VP++E++  N R+R
Sbjct: 241 TFHSLEDRITKHLFQEATKGPDLPLGLPVIPDEYKPDFKLATRKPIVPSEEELEQNNRAR 300

Query: 308 SAKLRAGMRTV 318
           SAKLR   + +
Sbjct: 301 SAKLRVIEKII 311


>gi|254719470|ref|ZP_05181281.1| S-adenosyl-methyltransferase MraW [Brucella sp. 83/13]
 gi|265984477|ref|ZP_06097212.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           sp. 83/13]
 gi|306839249|ref|ZP_07472066.1| S-adenosyl-methyltransferase MraW [Brucella sp. NF 2653]
 gi|264663069|gb|EEZ33330.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Brucella
           sp. 83/13]
 gi|306405796|gb|EFM62058.1| S-adenosyl-methyltransferase MraW [Brucella sp. NF 2653]
          Length = 346

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 165/326 (50%), Positives = 217/326 (66%), Gaps = 6/326 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           HVPVL+ ++I  L PAPG VI+D TFGAGGY+R   + G++VIA+DRDP A+  G+   +
Sbjct: 18  HVPVLIAEMIDALKPAPGAVIVDGTFGAGGYTRRILETGADVIAIDRDPTAIEAGRAMEK 77

Query: 80  DYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++  + +L ++ FS L + V         VDGVV D+GVSSMQID  +RGFSFQK GPLD
Sbjct: 78  EFPGRLNLVESRFSALDEAVARMSGAGKKVDGVVLDIGVSSMQIDEAERGFSFQKDGPLD 137

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRMS  G SA+D VN+    DL RI   LGEE+ A RIA  I KRR + PF  T DL++ 
Sbjct: 138 MRMSSRGASAADAVNRLKTGDLARIFNFLGEERHAGRIARMIEKRRAAKPFTRTLDLANA 197

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           I+  V  +  +RIHPATR FQALR++VN+E+ ELA+ L +AE+ +K GG L+VV+FHSLE
Sbjct: 198 IETLVGRNPKDRIHPATRVFQALRVYVNDELGELARALLAAERIIKPGGRLVVVTFHSLE 257

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           DR+VK+FFA R+G     RHM  ++     F    K  V PT E+   N R+RSAKLRAG
Sbjct: 258 DRMVKRFFADRAGGSAGSRHMPETHMRLPSFTPAVKGAVGPTPEEEERNPRARSAKLRAG 317

Query: 315 MRTVERSIEDD-SFVHLPRLPTLSQF 339
           +RT    +EDD S   LP+LP  ++ 
Sbjct: 318 IRTENPPLEDDLSLFGLPKLPETNEL 343


>gi|312134653|ref|YP_004001991.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor owensensis
           OL]
 gi|311774704|gb|ADQ04191.1| S-adenosyl-methyltransferase MraW [Caldicellulosiruptor owensensis
           OL]
          Length = 307

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 123/309 (39%), Positives = 190/309 (61%), Gaps = 10/309 (3%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSC 73
           + +H+PVLLE+ +  L   P  + +DATFG GG+S+   +  S+   +IA+DRD  A+  
Sbjct: 1   MYEHIPVLLEESVFFLVTNPDGIYVDATFGLGGHSKRILEKLSDKGFLIAIDRDLEAIEL 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130
           G+  ++ +K    +  ++FS++ + +   G+   DG++FD GVSS+Q+D  +RGFS+ K 
Sbjct: 61  GKRKLKVHK-NVKIVHSSFSKVDEVLKGLGIEKIDGILFDFGVSSLQLDKQERGFSYNKE 119

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM   S ++A DVVN  + KDL +I+   GEE+ A RIA AIV+RR   P +TT 
Sbjct: 120 AFLDMRMDTTSKLTAYDVVNFYSQKDLEKIIREYGEERFARRIAKAIVERRSKKPIETTT 179

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           +LS+LI   V   K+   HPA R+FQA+RI VN E++E+   L  + + L++GG +  +S
Sbjct: 180 ELSNLISSLVPRPKDGS-HPAQRTFQAIRIEVNGELDEIKIALEKSLRFLRSGGRICAIS 238

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK+FF   S + +  +   +           ITKK + P++E++  N+RS S
Sbjct: 239 FHSLEDRIVKEFFKFHSLECVCPKDIPVCVCGKKKELNIITKKPITPSKEEIEKNKRSHS 298

Query: 309 AKLRAGMRT 317
           AKLR   + 
Sbjct: 299 AKLRVAEKV 307


>gi|150397291|ref|YP_001327758.1| S-adenosyl-methyltransferase MraW [Sinorhizobium medicae WSM419]
 gi|150028806|gb|ABR60923.1| S-adenosyl-methyltransferase MraW [Sinorhizobium medicae WSM419]
          Length = 362

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 183/323 (56%), Positives = 229/323 (70%), Gaps = 1/323 (0%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+PVLLE+V+A L PAPGKVILD TFGAGGY+ +    G+ VIALDRDP A++ GQ  + 
Sbjct: 40  HIPVLLEEVLAALEPAPGKVILDGTFGAGGYASAILDAGAEVIALDRDPTAIAAGQSMVS 99

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
               + SL  + FS L ++ P +G+DGVV D+GVSSMQID  +RGFSFQK GPLDMRMS 
Sbjct: 100 ASGGRLSLIHSRFSGLAEHAPAEGLDGVVLDVGVSSMQIDEAERGFSFQKKGPLDMRMSA 159

Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199
           +G+SA+DVVN+A V DL RI G LGEEKQA RIA  I KRR  APF+TT+DL++LI+   
Sbjct: 160 AGVSAADVVNRAKVSDLIRIFGFLGEEKQAGRIARTIEKRRAEAPFETTRDLANLIETVT 219

Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259
                ++IHPATR FQALRIFVN+E+ ELA  L +AE+ALK GG L+VVSFHSLEDR+VK
Sbjct: 220 PRKAKDKIHPATRVFQALRIFVNDELGELAAALFAAERALKPGGRLVVVSFHSLEDRIVK 279

Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319
            FF  RSGK    RH+    A  A F  + K +V  + E+ + N R+RSAKLRAG+RT  
Sbjct: 280 TFFQDRSGKAGGSRHLPLVTARAATFAPVGKPMVSASDEEASRNPRARSAKLRAGIRTAA 339

Query: 320 RSIEDD-SFVHLPRLPTLSQFRG 341
            S   D S  +LP L +L++  G
Sbjct: 340 PSPGADLSIFNLPELASLARLGG 362


>gi|332982167|ref|YP_004463608.1| S-adenosyl-methyltransferase MraW [Mahella australiensis 50-1 BON]
 gi|332699845|gb|AEE96786.1| S-adenosyl-methyltransferase MraW [Mahella australiensis 50-1 BON]
          Length = 312

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 117/306 (38%), Positives = 168/306 (54%), Gaps = 9/306 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H PVL+E+V+  ++   G + +D T G GG++   C+       +I +D+D  A++   E
Sbjct: 6   HKPVLVEEVMQYMSCRKGGIYIDGTIGGGGHALEICRRIDGDGLLIGIDKDDEALAHAAE 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           T+++Y     L +  F  ++  V       VDGV+ DLGVSS Q+D   RGFS+     L
Sbjct: 66  TLKEYSSCVRLIKGDFRYMKALVNGIEVNEVDGVLLDLGVSSHQLDDAGRGFSYNAEAVL 125

Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM    + +A DVVN  + K L  I+   GEE+ A RIA  IVK RQ  P +TT  L 
Sbjct: 126 DMRMDKQQLLTAKDVVNTYDEKRLYEIIKDYGEERWAKRIASFIVKERQRYPIETTGQLV 185

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I++ +  + +    HPA R+FQA+RI VN+E+  + +GL  A   LK GG L V+SFH
Sbjct: 186 EVIKRAIPAAARREGPHPARRTFQAIRIEVNDELNSIKEGLIQAMDCLKPGGRLCVISFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDRLVK  F              +    +  V   +TKK V+ T ++V  N R+RSAK
Sbjct: 246 SLEDRLVKDTFRRWQNPCTCPPDTPLCVCGNKPVAAIVTKKPVIATPDEVESNPRARSAK 305

Query: 311 LRAGMR 316
           LR   +
Sbjct: 306 LRVCEK 311


>gi|237738334|ref|ZP_04568815.1| S-adenosyl-methyltransferase mraW [Fusobacterium mortiferum ATCC
           9817]
 gi|229420214|gb|EEO35261.1| S-adenosyl-methyltransferase mraW [Fusobacterium mortiferum ATCC
           9817]
          Length = 313

 Score =  381 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 110/306 (35%), Positives = 170/306 (55%), Gaps = 10/306 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H+PVL  + I  L      V LD T G GG+S    K      ++I++D+D  A+   ++
Sbjct: 9   HIPVLYRECIDNLVINKDGVYLDCTLGGGGHSEGILKELSDKGHLISIDQDQQAIDFAKK 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  Y +++ +F+  F  L   +   G   VDG++ D+GVSS Q+D  +RGFS++    L
Sbjct: 69  RLEKYGKKWQVFKNNFENLDMVLYMAGYDKVDGILMDIGVSSTQLDDPERGFSYRYDTRL 128

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+ S  +SA +VVN+   + L +I+   GEE+ A +IA  I + R     +TT +L 
Sbjct: 129 DMRMNRSNPLSAYEVVNEYPEEKLAKIIFEYGEERNARKIAKFICEARTEKNIETTGELV 188

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           ++I++     +  + HPA ++FQA+RI VN E+E L + +  A  +LK GG L +++FHS
Sbjct: 189 AIIKRAYP--ERAQKHPAKKTFQAIRIEVNRELEVLEKAIDKAVDSLKVGGRLGIITFHS 246

Query: 253 LEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDRLVK  F   +          I      A  + IT+K +VP  E+V FN R+ S+KL
Sbjct: 247 LEDRLVKTKFKDLATACKCPPGLPICVCGGKAKVKLITRKPIVPEGEEVEFNNRAHSSKL 306

Query: 312 RAGMRT 317
           R   R 
Sbjct: 307 RVVERI 312


>gi|260584184|ref|ZP_05851932.1| S-adenosyl-methyltransferase MraW [Granulicatella elegans ATCC
           700633]
 gi|260158810|gb|EEW93878.1| S-adenosyl-methyltransferase MraW [Granulicatella elegans ATCC
           700633]
          Length = 313

 Score =  381 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 105/312 (33%), Positives = 174/312 (55%), Gaps = 11/312 (3%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74
           +  HV VLL + +  L   P  + +D T G  G+S          ++   D+D  A+   
Sbjct: 1   MFKHVTVLLHETVDNLEVKPDGIYVDCTLGGAGHSEYLLGQLTTGHLYCFDQDMNAIDNA 60

Query: 75  QETMRDYKE--QFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK 129
           +  ++++ +  + +   A F  +Q  + + G   VDG+++DLGVSS Q+D  +RGFS+ +
Sbjct: 61  KIRLKNFIDEGKVTFIHANFRMIQKKLNELGIKKVDGILYDLGVSSPQLDQIERGFSYHQ 120

Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           +  LDMRM  +  ++A +++N+ +  +L RI    GEEK + +IA  I + RQ    +TT
Sbjct: 121 NAILDMRMDQTAPLTAKEIINEWSYDELVRIFYRYGEEKFSKQIARNIERIRQDHGIETT 180

Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L  +I+ ++  + +    HPA R FQA+RI VN+E+  +   L  A   L+ GG + V
Sbjct: 181 GELVDIIRDSIPAAARRKGGHPAKRIFQAVRIAVNDELAAVEDSLEQAFDLLEVGGRISV 240

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           +SFHSLEDR+VK  F  +S      +   ++P     A F+ IT+K ++PT+E++  N R
Sbjct: 241 ISFHSLEDRIVKTMFKQQSTVEQGPKNLPILPGQLESANFKLITRKPILPTEEEMQENSR 300

Query: 306 SRSAKLRAGMRT 317
           S+SAKLR   R 
Sbjct: 301 SQSAKLRVIERV 312


>gi|90418202|ref|ZP_01226114.1| putative S-adenosyl-methyltransferase mraW [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90337874|gb|EAS51525.1| putative S-adenosyl-methyltransferase mraW [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 348

 Score =  381 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/328 (48%), Positives = 209/328 (63%), Gaps = 7/328 (2%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77
             H+PVLL +V+  L P PG+VI+D TFGAGGY+R+    G++VIA+DRDP A++  +  
Sbjct: 17  ARHIPVLLAEVLEALAPKPGEVIVDGTFGAGGYTRAILDAGADVIAIDRDPAAIATARGL 76

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
              Y  + +  +  F  LQ  V  +       VDG+V D+GVSSMQ+D  +RGFSFQK G
Sbjct: 77  AEGYDGRLAPVEGRFGDLQRIVETQAEAAGGRVDGIVLDVGVSSMQLDEAERGFSFQKDG 136

Query: 132 PLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           PLDMRMS +G SA+DVVN+  V DL R++GILGEEKQA R+A AI  RR   PF  T DL
Sbjct: 137 PLDMRMSGAGPSAADVVNRLKVGDLLRVIGILGEEKQAGRVARAIEARRLEQPFTRTLDL 196

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + +I K V     ++I PATRSFQ LRIFVN+E+ ELA+ L +AE+ LK GG L++VSFH
Sbjct: 197 AGVIGKVVGRGPKDKIDPATRSFQGLRIFVNDELGELARALVAAERVLKPGGRLVIVSFH 256

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+VK+F   RS      RH+         F +  +  V  T  +   N R+RSAKL
Sbjct: 257 SLEDRIVKRFLRDRSSPPSGSRHLPDMAPATQTFVARNR-AVGATDAEAERNPRARSAKL 315

Query: 312 RAGMRTVERSIEDDSFVHLPRLPTLSQF 339
           RAG+RT E + +D   +    LP+L+  
Sbjct: 316 RAGIRTAEPARQDADELGFAGLPSLADL 343


>gi|262831477|sp|A6UB93|RSMH_SINMW RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 341

 Score =  381 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 183/323 (56%), Positives = 229/323 (70%), Gaps = 1/323 (0%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+PVLLE+V+A L PAPGKVILD TFGAGGY+ +    G+ VIALDRDP A++ GQ  + 
Sbjct: 19  HIPVLLEEVLAALEPAPGKVILDGTFGAGGYASAILDAGAEVIALDRDPTAIAAGQSMVS 78

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
               + SL  + FS L ++ P +G+DGVV D+GVSSMQID  +RGFSFQK GPLDMRMS 
Sbjct: 79  ASGGRLSLIHSRFSGLAEHAPAEGLDGVVLDVGVSSMQIDEAERGFSFQKKGPLDMRMSA 138

Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199
           +G+SA+DVVN+A V DL RI G LGEEKQA RIA  I KRR  APF+TT+DL++LI+   
Sbjct: 139 AGVSAADVVNRAKVSDLIRIFGFLGEEKQAGRIARTIEKRRAEAPFETTRDLANLIETVT 198

Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259
                ++IHPATR FQALRIFVN+E+ ELA  L +AE+ALK GG L+VVSFHSLEDR+VK
Sbjct: 199 PRKAKDKIHPATRVFQALRIFVNDELGELAAALFAAERALKPGGRLVVVSFHSLEDRIVK 258

Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319
            FF  RSGK    RH+    A  A F  + K +V  + E+ + N R+RSAKLRAG+RT  
Sbjct: 259 TFFQDRSGKAGGSRHLPLVTARAATFAPVGKPMVSASDEEASRNPRARSAKLRAGIRTAA 318

Query: 320 RSIEDD-SFVHLPRLPTLSQFRG 341
            S   D S  +LP L +L++  G
Sbjct: 319 PSPGADLSIFNLPELASLARLGG 341


>gi|332362961|gb|EGJ40750.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus sanguinis SK49]
          Length = 316

 Score =  381 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 101/319 (31%), Positives = 171/319 (53%), Gaps = 15/319 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           M++  H     H+ VLL + +  L   P  + +DAT G  G+S           ++ A D
Sbjct: 1   MTNEFH-----HITVLLHETVDQLAVKPDGIYVDATLGGAGHSEYLLSQLGDEGHLYAFD 55

Query: 66  RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120
           +D  A+   ++ +  Y E+   +  +  F  L+  + + GV   DG+ +DLGVSS Q+D 
Sbjct: 56  QDQTAIDNAKKRLAPYIERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQ 115

Query: 121 GDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS+++  PLDMRM+C   ++A +VVN  + +DL RI    GE+K + +IA  I + 
Sbjct: 116 RERGFSYKQDAPLDMRMNCDAALTAFEVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQA 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R   P +TT +L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   
Sbjct: 176 RSVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDL 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L   G + V++FHSLEDRL K+ F   S   +        +      + +++K ++P++E
Sbjct: 236 LAVDGRIAVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKLELVSRKPILPSKE 295

Query: 299 DVAFNRRSRSAKLRAGMRT 317
           ++  N R+ SAKLR   + 
Sbjct: 296 ELESNNRAHSAKLRVARKI 314


>gi|167647637|ref|YP_001685300.1| S-adenosyl-methyltransferase MraW [Caulobacter sp. K31]
 gi|263445765|sp|B0T839|RSMH_CAUSK RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|167350067|gb|ABZ72802.1| S-adenosyl-methyltransferase MraW [Caulobacter sp. K31]
          Length = 322

 Score =  381 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 146/320 (45%), Positives = 198/320 (61%), Gaps = 3/320 (0%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDP 68
           +  A +     HV VLL +V+A L   PG +++D TFGAGGY+R+    G++V A DRDP
Sbjct: 4   LEPAKNPEGASHVSVLLGEVVAALASGPGDMVIDGTFGAGGYTRAILATGASVTAFDRDP 63

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
                  E       +F L Q  FSQ+ +Y+ D  VDGV  DLGVSSMQ+D  +RGFSF 
Sbjct: 64  SVQRFAAE-FSATDGRFRLIQDRFSQITEYLEDASVDGVTLDLGVSSMQLDEAERGFSFM 122

Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           + GPLDMRM   G +A+D+VN  +  +L RIL + GEE  + RIA  I+KRR+  PF  T
Sbjct: 123 RDGPLDMRMGADGPTAADLVNDLDHTELARILYVYGEEHASRRIASFIIKRREERPFTRT 182

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            DL+ +I++ +   K  ++HPATRSFQ LRI VN E++EL  GL +AE+ LK GG L VV
Sbjct: 183 LDLAHVIERALGGRKGAKVHPATRSFQGLRIAVNAELDELEAGLLAAERVLKPGGRLAVV 242

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           +FHSLEDR+VK F A R+G+       +P      P  FQ I+ K + P + ++A N R+
Sbjct: 243 TFHSLEDRIVKNFLAERAGRTPGGSRHLPPVEAGAPPSFQLISSKAIAPGEAELAVNPRA 302

Query: 307 RSAKLRAGMRTVERSIEDDS 326
           RS+KLRA +RT      + S
Sbjct: 303 RSSKLRAAVRTTAPVWSEAS 322


>gi|223933600|ref|ZP_03625580.1| S-adenosyl-methyltransferase MraW [Streptococcus suis 89/1591]
 gi|253752421|ref|YP_003025562.1| S-adenosyl-methyltransferase MraW [Streptococcus suis SC84]
 gi|253754247|ref|YP_003027388.1| S-adenosyl-methyltransferase MraW [Streptococcus suis P1/7]
 gi|253756181|ref|YP_003029321.1| S-adenosyl-methyltransferase MraW [Streptococcus suis BM407]
 gi|302024366|ref|ZP_07249577.1| S-adenosyl-methyltransferase MraW [Streptococcus suis 05HAS68]
 gi|330833363|ref|YP_004402188.1| S-adenosyl-methyltransferase MraW [Streptococcus suis ST3]
 gi|262827260|sp|C6GW75|RSMH_STRS4 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262827309|sp|C5VZR6|RSMH_STRSE RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262827338|sp|C6GPU1|RSMH_STRSX RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262831434|sp|A4VX71|RSMH_STRSY RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262831441|sp|A4W3H4|RSMH_STRS2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|223897726|gb|EEF64107.1| S-adenosyl-methyltransferase MraW [Streptococcus suis 89/1591]
 gi|251816710|emb|CAZ52352.1| S-adenosyl-methyltransferase MraW [Streptococcus suis SC84]
 gi|251818645|emb|CAZ56480.1| S-adenosyl-methyltransferase MraW [Streptococcus suis BM407]
 gi|251820493|emb|CAR47246.1| S-adenosyl-methyltransferase MraW [Streptococcus suis P1/7]
 gi|319758827|gb|ADV70769.1| S-adenosyl-methyltransferase MraW [Streptococcus suis JS14]
 gi|329307586|gb|AEB82002.1| S-adenosyl-methyltransferase MraW [Streptococcus suis ST3]
          Length = 316

 Score =  381 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 105/309 (33%), Positives = 167/309 (54%), Gaps = 10/309 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
           +H  VLL + + +L+  P  + +DAT G  G+S         G ++ A D+D  A+    
Sbjct: 6   NHTTVLLHETVDMLDIKPNGIYVDATLGGAGHSEYLLSQLTDGGHLYAFDQDQTAIDHAH 65

Query: 76  ETMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130
             +  Y  K Q +  +  F  L+  + + GV   DG+ +DLGVSS Q+D  +RGFS+++ 
Sbjct: 66  IRLASYIEKGQVTFIRDNFRNLKTRLAELGVTEIDGICYDLGVSSPQLDERERGFSYKQD 125

Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM+  G ++A DVVN  +  DL RI    GE+K + +IA  I + R   P +TT 
Sbjct: 126 APLDMRMNREGHLTAYDVVNNYDYHDLVRIFFKYGEDKFSKQIARKIEQARAVKPIETTT 185

Query: 190 DLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L+ LI+      +   + HPA + FQA+RI VN+E+    + ++ A   L   G + V+
Sbjct: 186 ELAELIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDLLALDGRISVI 245

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           +FHSLEDRL K+ F   S   +        +   A  + + +K ++P+QE++  N R+ S
Sbjct: 246 TFHSLEDRLTKQLFKEASTIDVPKGLPFIPDDLKAPLELVNRKPILPSQEELEANNRAHS 305

Query: 309 AKLRAGMRT 317
           AKLR   + 
Sbjct: 306 AKLRVAKKV 314


>gi|222151001|ref|YP_002560154.1| S-adenosyl-methyltransferase MraW [Macrococcus caseolyticus
           JCSC5402]
 gi|263456379|sp|B9EB47|RSMH_MACCJ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|222120123|dbj|BAH17458.1| S-adenosyl-methyltransferase MraW [Macrococcus caseolyticus
           JCSC5402]
          Length = 310

 Score =  381 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 108/308 (35%), Positives = 168/308 (54%), Gaps = 10/308 (3%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74
           +  HV VLLE+ +  LN  P  + +D T G  G+S    K     ++I++D+D  A+   
Sbjct: 1   MFHHVTVLLEETVDQLNIDPNGIYVDCTLGGAGHSLYLVKQLQEGHLISIDQDQTAIDNA 60

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
              ++DY ++ +  +  F  L D +     + VDG+++DLGVSS Q+D G+RGFS+ +  
Sbjct: 61  HIILKDYLDKVTFVKDNFRNLSDILAHLDIQKVDGILYDLGVSSPQLDVGERGFSYHQEA 120

Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM  +  +SA +VVN    + L  I    GEEK + +IA  I   R+  P +TT +
Sbjct: 121 KLDMRMDQTQTLSAYEVVNTWPYEKLVSIFFRYGEEKFSKQIARKIEAERELKPIETTTE 180

Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I+  +   ++    HPA R FQA+RI VN+E+      +  A  ++K GG + V++
Sbjct: 181 LVEIIKAAIPAPARRTGGHPAKRVFQAIRIAVNDELGAFESSIEQAIDSVKPGGRISVIT 240

Query: 250 FHSLEDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           FHSLEDRL K+ F   S      R   ++P    P   + IT+K +  + E++  N R+R
Sbjct: 241 FHSLEDRLCKQVFQEYSKGPDIPRGLPVVPPEYQPK-LKKITRKPITSSNEELEHNNRAR 299

Query: 308 SAKLRAGM 315
           SAKLR   
Sbjct: 300 SAKLRVVE 307


>gi|254476257|ref|ZP_05089643.1| S-adenosyl-methyltransferase MraW [Ruegeria sp. R11]
 gi|214030500|gb|EEB71335.1| S-adenosyl-methyltransferase MraW [Ruegeria sp. R11]
          Length = 330

 Score =  381 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 157/328 (47%), Positives = 210/328 (64%), Gaps = 6/328 (1%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRD 67
           M++    + G HVPVLL  ++A + P  G+  LD TFGAGGYSR   + G+ +VI +DRD
Sbjct: 1   MTTDRQTSSGPHVPVLLRPLLAAVAPVSGR-WLDGTFGAGGYSRGLLEAGADHVIGVDRD 59

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
           P A    Q+ + DY  + +  Q  FS++ +Y  D  +DGVV DLGVSSMQ+D  +RGFSF
Sbjct: 60  PLAFEMAQDWIGDYDGRLTFQQGVFSRMDEYAQD--LDGVVLDLGVSSMQLDMAERGFSF 117

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
            + GPLDMRMS  G SA+D+V + +   L  IL + GEE+ + RIA AIVK R  AP  T
Sbjct: 118 MRDGPLDMRMSQDGPSAADLVAELDEAALADILFMFGEERASRRIARAIVKARTEAPITT 177

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T  L+ +I+  +  SK  + HPATRSFQ LRI VN E EEL +GL +AE+ALK GGLL V
Sbjct: 178 TLQLAGIIESCLPRSKPGQSHPATRSFQGLRIAVNAEYEELFEGLLAAERALKPGGLLAV 237

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPS-NAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+FHS+EDR+VK+FF  R+GK        P     P+ F  +T+K V P  E++A N RS
Sbjct: 238 VTFHSIEDRMVKRFFQHRAGKTGRANRYAPEQEETPSQFTLVTRKAVGPDDEELAENPRS 297

Query: 307 RSAKLRAGMRTVERSIEDDSF-VHLPRL 333
           RSA+LR G RT    +E  +  + +P+L
Sbjct: 298 RSARLRVGRRTDAAPVEISAKDIGMPQL 325


>gi|319947571|ref|ZP_08021801.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus australis ATCC 700641]
 gi|319746259|gb|EFV98522.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus australis ATCC 700641]
          Length = 316

 Score =  381 bits (979), Expect = e-104,   Method: Composition-based stats.
 Identities = 108/319 (33%), Positives = 169/319 (52%), Gaps = 15/319 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           MS   H     HV VLL + I +L+  P  + +DAT G  G+S           ++ A D
Sbjct: 1   MSKEFH-----HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSQLSEKGHLYAFD 55

Query: 66  RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120
           +D  A+   ++ +  Y E+   +  +  F  LQ  + + GV   DG+ +DLGVSS Q+D 
Sbjct: 56  QDQHAIDNAEKRLAPYVEKGMVTFIKDNFRNLQARLQELGVNEIDGICYDLGVSSPQLDE 115

Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
             RGFS++K  PLDMRM+    ++A DVVN  +  DL RI    GE+K + +IA  I + 
Sbjct: 116 RSRGFSYKKDAPLDMRMNQEASLTAYDVVNNYDYHDLVRIFFKYGEDKFSKQIARKIEQA 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R   P +TT +L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   
Sbjct: 176 RAVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDL 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L  GG + V++FHSLEDRL K+ F   S   +               + +++K ++P+QE
Sbjct: 236 LAVGGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPEDLKPKMELVSRKPILPSQE 295

Query: 299 DVAFNRRSRSAKLRAGMRT 317
           ++  N R+ SAKLR   + 
Sbjct: 296 ELEKNNRAHSAKLRVARKI 314


>gi|255282562|ref|ZP_05347117.1| S-adenosyl-methyltransferase MraW [Bryantella formatexigens DSM
           14469]
 gi|255266855|gb|EET60060.1| S-adenosyl-methyltransferase MraW [Bryantella formatexigens DSM
           14469]
          Length = 312

 Score =  381 bits (979), Expect = e-104,   Method: Composition-based stats.
 Identities = 100/307 (32%), Positives = 172/307 (56%), Gaps = 9/307 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            H  VLL + I  LN  P  + +D T G GG+S   C+       ++ +D+D  A++   
Sbjct: 4   KHTSVLLGETIDALNINPDGIYVDGTLGGGGHSYEICRRLSGRGRLVGIDQDAAAIAAAS 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E + ++K++ ++ ++ + ++++ +   GV   DG++ DLGVSS Q+D  DRGF++++  P
Sbjct: 64  ERLGEFKDKVTIIRSNYCEMRERLAGIGVTGADGIILDLGVSSYQLDTADRGFTYREDAP 123

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM      +A D+VN  +  +L RI+   GE++ A  IA  IV+ R+  P +TT +L
Sbjct: 124 LDMRMDQRQTRTAKDIVNGYSEMELYRIIRDYGEDRFAKNIAKHIVQAREEKPLETTGEL 183

Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+  +    +    HPA ++FQA+RI +NNE+  L+  L    + L   G + +++F
Sbjct: 184 IHVIKAAIPMKVRAVGGHPAKKTFQAIRIELNNELGVLSDSLDDMIELLNNKGRICIITF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  F       +  +   +         + +T+K ++P +E++  N RS+SA
Sbjct: 244 HSLEDRIVKNAFRKNENPCICPKEFPVCVCGRKPKGRVLTRKPILPGEEEMKENSRSKSA 303

Query: 310 KLRAGMR 316
           KLR   R
Sbjct: 304 KLRVFER 310


>gi|331265736|ref|YP_004325366.1| S-adenosyl-methyltransferase [Streptococcus oralis Uo5]
 gi|326682408|emb|CBZ00025.1| S-adenosyl-methyltransferase [Streptococcus oralis Uo5]
          Length = 316

 Score =  381 bits (979), Expect = e-104,   Method: Composition-based stats.
 Identities = 106/319 (33%), Positives = 172/319 (53%), Gaps = 15/319 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M+   H     HV VLL + I +L+  P  + +DAT G  G+S           ++ A D
Sbjct: 1   MTKEFH-----HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFD 55

Query: 66  RDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120
           +D  A+   Q+ +  Y  KE  +  +  F  LQ  + + GV   DG+ +DLGVSS Q+D 
Sbjct: 56  QDQNAIDNAQKRLAPYIEKEMVTFIKDNFRHLQARLQEAGVQEIDGICYDLGVSSPQLDQ 115

Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS++K  PLDMRM+    ++A +VVN  +  DL RI    GE+K + ++A  I + 
Sbjct: 116 RERGFSYKKDAPLDMRMNQEASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQVARKIEQA 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R+  P +TT +L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A + 
Sbjct: 176 RELKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMEL 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L   G + V++FHSLEDRL K+ F   S   +        +      + +++K ++P++E
Sbjct: 236 LAVDGRISVITFHSLEDRLTKQLFKEASTVEIPKGLPFIPDELKPKMELVSRKPILPSKE 295

Query: 299 DVAFNRRSRSAKLRAGMRT 317
           ++  N RS SAKLR   + 
Sbjct: 296 ELEANNRSHSAKLRVARKI 314


>gi|220931744|ref|YP_002508652.1| S-adenosyl-methyltransferase MraW [Halothermothrix orenii H 168]
 gi|263456084|sp|B8CWI8|RSMH_HALOH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|219993054|gb|ACL69657.1| S-adenosyl-methyltransferase MraW [Halothermothrix orenii H 168]
          Length = 311

 Score =  381 bits (979), Expect = e-104,   Method: Composition-based stats.
 Identities = 114/310 (36%), Positives = 173/310 (55%), Gaps = 10/310 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
           +H PVLL++ +  L      + +DAT G GG++    K  ++   VI +DRD  A+   +
Sbjct: 3   EHKPVLLKESLDYLKCKENGIYIDATLGRGGHTEEIIKAINDRGLVIGIDRDHEAIESVK 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + ++ Y          F+ +   +       VDG++FDLGVSS Q D  +RGFS++K GP
Sbjct: 63  KRLKKYSS-LRTVHDNFTNIPFILEQFNIKAVDGMLFDLGVSSPQFDNPERGFSYRKEGP 121

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  +  ++A  +VN  + ++LT I    GEE+ ASRIA+ I+K RQ  P +TT  L
Sbjct: 122 LDMRMDKNQELTAEYIVNNFSHEELTNIFKEYGEERWASRIANFIIKSRQHKPIKTTLQL 181

Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           +++I+  +   ++    HPA R+FQALRI  N+E+  L + +    K LK GG + ++SF
Sbjct: 182 TTIIKDAIPASARRKGGHPARRTFQALRIATNDELNILKKTINHVVKFLKPGGRICIISF 241

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VKK F   +   +           H    + ITKK V P + +V  N R+RSA
Sbjct: 242 HSLEDRIVKKTFRELARDCVCPPDFPECVCDHKRKLKIITKKPVKPGENEVENNPRARSA 301

Query: 310 KLRAGMRTVE 319
           +LR   R + 
Sbjct: 302 RLRVAERVLN 311


>gi|239832317|ref|ZP_04680646.1| S-adenosyl-methyltransferase MraW [Ochrobactrum intermedium LMG
           3301]
 gi|239824584|gb|EEQ96152.1| S-adenosyl-methyltransferase MraW [Ochrobactrum intermedium LMG
           3301]
          Length = 347

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 166/326 (50%), Positives = 215/326 (65%), Gaps = 6/326 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           HVPVL+ +VI  L P  G VI+D TFGAGGY+R   + G++VIA+DRDP A+  G+   +
Sbjct: 19  HVPVLIAEVIDALKPVAGAVIVDGTFGAGGYTRRILEAGADVIAIDRDPTAIEAGRVMEK 78

Query: 80  DYKEQFSLFQATFSQLQDYV-----PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
            +  + +L ++ FS L D V         VDGVV D+GVSSMQID  +RGFSFQK GPLD
Sbjct: 79  QFPGRLNLVESRFSALDDAVSTVKGAGSKVDGVVLDIGVSSMQIDEAERGFSFQKDGPLD 138

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRMS  G SA+DVVN+    DL RI   LGEE+ A RIA  I KRR + PF  T DL++ 
Sbjct: 139 MRMSKKGPSAADVVNRLKTGDLARIFNFLGEERHAGRIARMIDKRRTAQPFTRTLDLANA 198

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           I+  V  +  +RIHPATR FQALR++VN+E+ ELA+ L +AE+ LK GG L+VV+FHSLE
Sbjct: 199 IETLVGRNPKDRIHPATRVFQALRVYVNDELGELARALLAAERILKPGGRLVVVTFHSLE 258

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           DR+VK++FA R+G     RH+  ++   A F    K  V PT E+   N R+RSAKLRAG
Sbjct: 259 DRMVKRYFADRAGGSAGSRHLPETHVRLASFTPAIKGAVGPTAEEEERNPRARSAKLRAG 318

Query: 315 MRTVERSIEDD-SFVHLPRLPTLSQF 339
            RT    +EDD S   LP+LP  ++ 
Sbjct: 319 TRTENPPLEDDLSLFGLPKLPETNEL 344


>gi|332638186|ref|ZP_08417049.1| 16S rRNA m(4)C1402 methyltranserfase [Weissella cibaria KACC 11862]
          Length = 314

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 123/312 (39%), Positives = 179/312 (57%), Gaps = 12/312 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73
           T  +HV VLL + I  LN  P  V +DAT G GG+S+          + + D+D  A++ 
Sbjct: 2   TEFNHVTVLLNEAIDNLNVKPDGVYVDATLGGGGHSQLLASRLTTGKLWSFDQDITAINY 61

Query: 74  GQETMRD--YKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQ 128
             E +       + +  Q  F  L+  + + GV   DG+V+DLGVSS Q D G RGFS+ 
Sbjct: 62  NTEHLAAELAAGKVAFIQNNFRNLKAALAEVGVTEIDGIVYDLGVSSPQFDDGQRGFSYN 121

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
              PLDMRM  S  ++A  VVN+ +  DL RIL   GEEK A +IA AI ++R   P +T
Sbjct: 122 YDAPLDMRMDQSQELNARTVVNEWDFHDLLRILSRYGEEKFAKQIARAIERQRAIKPIET 181

Query: 188 TQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T +L  +I+  +  + +    HPA RSFQA+RI VN+E+  + + L  A   LK GG + 
Sbjct: 182 TFELVEVIKSAIPAAARRTGGHPAKRSFQAIRIAVNDELGVVEESLAQALDMLKVGGRIS 241

Query: 247 VVSFHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           V++FHSLEDRLVK  F  ++   +V A   +IP    P  F+ +++K ++P++E++A N 
Sbjct: 242 VITFHSLEDRLVKTMFKEKTALPEVPAGLPIIPDEMQP-DFKLVSRKPILPSEEEMAENH 300

Query: 305 RSRSAKLRAGMR 316
           R+ SAKLR   R
Sbjct: 301 RAHSAKLRVIER 312


>gi|315222117|ref|ZP_07864026.1| S-adenosyl-methyltransferase MraW [Streptococcus anginosus F0211]
 gi|315188743|gb|EFU22449.1| S-adenosyl-methyltransferase MraW [Streptococcus anginosus F0211]
          Length = 316

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 111/320 (34%), Positives = 175/320 (54%), Gaps = 17/320 (5%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           M++  H     HV VLL + I  L+  P  V +DAT G  G+S            + A D
Sbjct: 1   MTNEFH-----HVTVLLHETIDQLDIKPNGVYVDATLGGAGHSEYLLSKLGENGRLYAFD 55

Query: 66  RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120
           +D  A+   Q+ +  Y EQ   +     F  L+  + + GV   DG+ +DLGVSS Q+D 
Sbjct: 56  QDQTAIEHAQKRLASYVEQGMVTFINDNFRHLKARLNELGVEEIDGICYDLGVSSPQLDE 115

Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS+++  PLDMRM+    ++A +VVNQ +  DL RI    GE+K + +IA  I + 
Sbjct: 116 RERGFSYKQDAPLDMRMNREAKLTAYEVVNQYSYHDLVRIFFKYGEDKFSKQIARKIEQM 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R+  P +TT +L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   
Sbjct: 176 REKKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDL 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297
           L   G + V++FHSLEDRL K+ F   S  +V      IP +  P + + +T+K ++P++
Sbjct: 236 LAVDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPEDLQPKM-KLVTRKPILPSK 294

Query: 298 EDVAFNRRSRSAKLRAGMRT 317
           E++  N R+ SAKLR   + 
Sbjct: 295 EELDNNNRAHSAKLRVAQKV 314


>gi|323127869|gb|ADX25166.1| S-adenosyl-methyltransferase MraW [Streptococcus dysgalactiae
           subsp. equisimilis ATCC 12394]
          Length = 337

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 107/328 (32%), Positives = 174/328 (53%), Gaps = 15/328 (4%)

Query: 1   MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-- 58
           ++  + K M+   H     HV VLL + + +L+  P  + +DAT G  G+S         
Sbjct: 14  LKYGTIKVMTKEFH-----HVTVLLHETVDMLDIKPNGIYVDATLGGSGHSAYLLSKLSE 68

Query: 59  -SNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLG 112
             ++   D+D  A+   Q  ++ Y  K Q +  +  F  L+  +   GV   DG+++DLG
Sbjct: 69  QGHLYCFDQDQKAIDNAQLILKPYIDKGQVTFIKDNFRNLKARLEALGVTKIDGILYDLG 128

Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASR 171
           VSS Q+D  +RGFS+++  PLDMRM   + ++A DVVN     DL +I    GE+K + +
Sbjct: 129 VSSPQLDERERGFSYKQDAPLDMRMDRQAPLTAYDVVNTYPFNDLVKIFFKYGEDKFSKQ 188

Query: 172 IAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQ 230
           IA  I + R   P +TT +L+ LI+      +   + HPA + FQA+RI VN+E+    +
Sbjct: 189 IARKIEQARAIKPIETTTELAELIKAAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADE 248

Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK 290
            ++ A + L   G + V++FHSLEDRL K+ F   S   +              F+ +++
Sbjct: 249 SIQDAMELLALDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPEDMKPTFELVSR 308

Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMRTV 318
           K ++P+QE++A N R+ SAKLR   +  
Sbjct: 309 KPILPSQEELAANNRAHSAKLRVAKKIR 336


>gi|168333718|ref|ZP_02691971.1| S-adenosyl-methyltransferase MraW [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 311

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 101/308 (32%), Positives = 165/308 (53%), Gaps = 9/308 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
           +H+ VLL + I  LN     + +D T G  G++   C+       ++ +D+D  A++  +
Sbjct: 4   NHISVLLNECIEGLNIKTNGIYVDGTLGGAGHATEICRHLNSEGTLVGIDQDAIAIATAE 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             + +   +  + +  F+ +   + +     +DG++ DLGVSS Q+D  +RGFS+ +   
Sbjct: 64  ARLAEAANRVLVIKXNFANVDAVLEELEIDKIDGMLLDLGVSSYQLDEAERGFSYMRDAK 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+     SA DVVN     +L  ++   GEEK A RIA  IV+ R S+   TT +L
Sbjct: 124 LDMRMNQDAKFSAFDVVNSYTEDELAVVIKNFGEEKWARRIAKFIVEARASSSIDTTYEL 183

Query: 192 SSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+K +   ++    HPA R+FQA+RI VN EI+ +A  ++     L  GG L +++F
Sbjct: 184 VEIIKKAIPKAARLEGGHPAKRTFQAIRIEVNKEIDIIAPAIKEIVAHLNVGGRLAIITF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  F              I      +  + ITKK ++P+++++  N RS+SA
Sbjct: 244 HSLEDRIVKHTFRELENPCTCPSNFPICVCNKKSQVKVITKKPILPSEQELENNSRSKSA 303

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 304 KLRIVEKI 311


>gi|116334056|ref|YP_795583.1| SAM-dependent methyltransferase for cell envelope biogenesis
           [Lactobacillus brevis ATCC 367]
 gi|122269260|sp|Q03QH0|RSMH_LACBA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|116099403|gb|ABJ64552.1| SAM-dependent methyltransferase for cell envelope biogenesis
           [Lactobacillus brevis ATCC 367]
          Length = 314

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 117/310 (37%), Positives = 178/310 (57%), Gaps = 12/310 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76
            HV VLL++ +A L   P  V +D T G GG+S+   +     ++ A D+D  A++  +E
Sbjct: 5   HHVTVLLKEAVAGLAIKPTGVYVDCTLGGGGHSQRILEQLTTGHLYAFDQDQTAITYNEE 64

Query: 77  TMRDYKE--QFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            ++ Y +  + +  ++ F Q+Q  + ++G   VDG+++DLGVSS Q D  DRGFS+Q   
Sbjct: 65  HLKTYLDAGKLTFIKSNFRQIQTELTERGITQVDGILYDLGVSSPQFDEADRGFSYQHDA 124

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  S  +SA  VVN+ +  DL RI    GEEK A  IA AI + R+ AP  TT  
Sbjct: 125 PLDMRMDQSQKLSAWIVVNEWSFNDLLRIFHRYGEEKFAKPIARAIERHREQAPIDTTGQ 184

Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I++ +  + + +  HPA + FQA+RI VN+E+  L   L  A   L   G + V++
Sbjct: 185 LVEIIKEGIPAAARRHGGHPAKKVFQAIRIAVNDELGALEDSLEQAVSLLDVNGRISVIT 244

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           F SLEDRLVK  F  +S  +  + H IP   +     F+ +  K ++P++E++A N R+ 
Sbjct: 245 FQSLEDRLVKTMFREQS-SLPELPHGIPVIPDNLQPDFKLVNHKPILPSEEELAVNHRAH 303

Query: 308 SAKLRAGMRT 317
           SAKLR   + 
Sbjct: 304 SAKLRILEKI 313


>gi|332358033|gb|EGJ35866.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus sanguinis SK1056]
          Length = 316

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 101/319 (31%), Positives = 170/319 (53%), Gaps = 15/319 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           M++  H     H+ VLL + +  L   P  + +DAT G  G+S           ++ A D
Sbjct: 1   MTNEFH-----HITVLLHETVDQLAVKPDGIYVDATLGGAGHSEYLLSQLGDEGHLYAFD 55

Query: 66  RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120
           +D  A+   ++ +  Y E+   +  +  F  L+  + + GV   DG+ +DLGVSS Q+D 
Sbjct: 56  QDQTAIDNAKKRLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQ 115

Query: 121 GDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS+++  PLDMRM+    ++A DVVN  + +DL RI    GE+K + +IA  I + 
Sbjct: 116 RERGFSYKQDAPLDMRMNREAALTAFDVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQA 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R   P +TT +L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   
Sbjct: 176 RSVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGATDESIQQAIDL 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L   G + V++FHSLEDRL K+ F   S   +        +      + +++K ++P++E
Sbjct: 236 LAVDGRIAVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKLELVSRKPILPSKE 295

Query: 299 DVAFNRRSRSAKLRAGMRT 317
           ++  N R+ SAKLR   + 
Sbjct: 296 ELESNNRAHSAKLRVARKI 314


>gi|325686943|gb|EGD28967.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus sanguinis SK72]
          Length = 316

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 101/319 (31%), Positives = 170/319 (53%), Gaps = 15/319 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           M++  H     H+ VLL + +  L   P  + +DAT G  G+S           ++ A D
Sbjct: 1   MTNEFH-----HITVLLHETVDQLAVKPDGIYVDATLGGAGHSEYLLSQLGDEGHLYAFD 55

Query: 66  RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120
           +D  A+   ++ +  Y E+   +  +  F  L+  + + GV   DG+ +DLGVSS Q+D 
Sbjct: 56  QDQTAIDNAKKRLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQ 115

Query: 121 GDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS+++  PLDMRM+    ++A DVVN  + +DL RI    GE+K + +IA  I + 
Sbjct: 116 RERGFSYKQDAPLDMRMNREAALTAFDVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQA 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R   P +TT +L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   
Sbjct: 176 RSIKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDL 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L   G + V++FHSLEDRL K+ F   S   +        +      + +++K ++P++E
Sbjct: 236 LAVDGRIAVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKLELVSRKPILPSKE 295

Query: 299 DVAFNRRSRSAKLRAGMRT 317
           ++  N R+ SAKLR   + 
Sbjct: 296 ELESNNRAHSAKLRVARKI 314


>gi|332976270|gb|EGK13132.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Desmospora sp. 8437]
          Length = 317

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 112/316 (35%), Positives = 179/316 (56%), Gaps = 9/316 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSC 73
           +  H  V+ E+ +  L   PG + +D T G  G+S    +       +I LD+D  A+  
Sbjct: 1   MFRHETVMREEAVDGLLVRPGGIYVDCTLGGAGHSLLIAERLGKDGILIGLDQDDRALQA 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
             + ++    Q  L ++ F +L++ +   G   VDGV+FD+GVSS Q+D G+RGFS+Q  
Sbjct: 61  ASDRLKGADCQVHLIKSNFRRLEEVLGRLGLDRVDGVLFDIGVSSPQLDEGERGFSYQHD 120

Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM   G ++A DVVN  + +++  IL   GEEK + RIA  IV+ R   P +TT 
Sbjct: 121 APLDMRMDPDGELTARDVVNDWSEEEIAHILFRYGEEKFSRRIARKIVETRSQYPIETTG 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L+++I++ +   ++    HPA RSFQA+RI VN+E+    +GL  A ++L +GG + V+
Sbjct: 181 ELAAVIKEGIPAPARRKGPHPARRSFQAIRIAVNDELNAFEEGLEQAVRSLNSGGRVSVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K+FF  ++   +      + +       + ITKK + P+  +   N R+R
Sbjct: 241 TFHSLEDRICKRFFQEKARGCICPPDFPVCTCGKTPELRIITKKSLQPSAAETGRNPRAR 300

Query: 308 SAKLRAGMRTVERSIE 323
           SA+LR   +  E   E
Sbjct: 301 SARLRIAEKCEEGQRE 316


>gi|125718671|ref|YP_001035804.1| S-adenosyl-methyltransferase MraW [Streptococcus sanguinis SK36]
 gi|262827313|sp|A3CPZ9|RSMH_STRSV RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|125498588|gb|ABN45254.1| S-adenosyl-methyltransferase mraW, putative [Streptococcus
           sanguinis SK36]
 gi|324994098|gb|EGC26012.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus sanguinis SK678]
          Length = 316

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 100/319 (31%), Positives = 170/319 (53%), Gaps = 15/319 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           M++  H     H+ VLL + +  L   P  + +DAT G  G+S           ++ A D
Sbjct: 1   MTNEFH-----HITVLLHETVDQLAVKPDGIYVDATLGGAGHSEYLLSQLGDEGHLYAFD 55

Query: 66  RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120
           +D  A+   ++ +  Y E+   +  +  F  L+  + + GV   DG+ +DLGVSS Q+D 
Sbjct: 56  QDQTAIDNAKKRLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQ 115

Query: 121 GDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS+++  PLDMRM+    ++A +VVN  + +DL RI    GE+K + +IA  I + 
Sbjct: 116 RERGFSYKQDAPLDMRMNREAALTAFEVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQA 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R   P +TT +L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   
Sbjct: 176 RSVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDL 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L   G + V++FHSLEDRL K+ F   S   +        +      + +++K ++P++E
Sbjct: 236 LAVDGRIAVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKLELVSRKPILPSKE 295

Query: 299 DVAFNRRSRSAKLRAGMRT 317
           ++  N R+ SAKLR   + 
Sbjct: 296 ELESNNRAHSAKLRVARKI 314


>gi|332366385|gb|EGJ44136.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus sanguinis SK355]
          Length = 316

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 100/319 (31%), Positives = 170/319 (53%), Gaps = 15/319 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           M++  H     H+ VLL + +  L   P  + +DAT G  G+S           ++ A D
Sbjct: 1   MTNEFH-----HITVLLHETVDQLAVKPDGIYVDATLGGAGHSEYLLSQLGDEGHLYAFD 55

Query: 66  RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120
           +D  A+   ++ +  Y E+   +  +  F  L+  + + GV   DG+ +DLGVSS Q+D 
Sbjct: 56  QDQTAIDNAKKRLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQ 115

Query: 121 GDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS+++  PLDMRM+    ++A +VVN  + +DL RI    GE+K + +IA  I + 
Sbjct: 116 RERGFSYKQDAPLDMRMNRDAALTAFEVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQA 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R   P +TT +L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   
Sbjct: 176 RSVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDL 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L   G + V++FHSLEDRL K+ F   S   +        +      + +++K ++P++E
Sbjct: 236 LAVDGRIAVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKLELVSRKPILPSKE 295

Query: 299 DVAFNRRSRSAKLRAGMRT 317
           ++  N R+ SAKLR   + 
Sbjct: 296 ELESNNRAHSAKLRVARKI 314


>gi|322387149|ref|ZP_08060759.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus infantis ATCC 700779]
 gi|321141678|gb|EFX37173.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus infantis ATCC 700779]
          Length = 316

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 106/319 (33%), Positives = 173/319 (54%), Gaps = 15/319 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M+   H     HV V+L + I +L+  P  + +DAT G  G+S           ++ A D
Sbjct: 1   MTKEFH-----HVTVMLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFD 55

Query: 66  RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120
           +D  A+   Q+ +  Y E+   +  +  F  L+D + D GV   DG+ +DLGVSS Q+D 
Sbjct: 56  QDQNAIDNAQKRLAPYIEKGMVTFIKDNFRHLKDRLHDLGVTEIDGICYDLGVSSPQLDQ 115

Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS++K+ PLDMRM+    ++A +VVN  +  DL RI    GE+K + +IA  I + 
Sbjct: 116 RERGFSYKKNAPLDMRMNQEASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQA 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R+  P +TT +L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   
Sbjct: 176 REQKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDM 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L   G + V++FHSLEDRL K+ F   S   +        +      + +++K ++P++E
Sbjct: 236 LALDGRISVITFHSLEDRLTKQLFKEVSTVKVPKGLPFIPDDLKPKMELVSRKPILPSKE 295

Query: 299 DVAFNRRSRSAKLRAGMRT 317
           ++  N RS SAKLR   + 
Sbjct: 296 ELEANNRSHSAKLRVARKI 314


>gi|167754606|ref|ZP_02426733.1| hypothetical protein CLORAM_00108 [Clostridium ramosum DSM 1402]
 gi|237733759|ref|ZP_04564240.1| S-adenosyl-methyltransferase mraW [Mollicutes bacterium D7]
 gi|167705438|gb|EDS20017.1| hypothetical protein CLORAM_00108 [Clostridium ramosum DSM 1402]
 gi|229383097|gb|EEO33188.1| S-adenosyl-methyltransferase mraW [Coprobacillus sp. D7]
          Length = 314

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 103/311 (33%), Positives = 166/311 (53%), Gaps = 8/311 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74
           + DHV VLL++ +  LN     + +D T G  G+S +  K     ++   D+D  A+   
Sbjct: 1   MFDHVTVLLKEAVEGLNIKADGIYVDCTLGGAGHSCAILKQLTTGHLYCFDQDQTAIEAA 60

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +  +      +++  + F  +++ + + GV   DG++FDLGVSS Q D G RGFS+    
Sbjct: 61  RLRLDAVGNNYTIIYSNFVNIKEKLNELGVTRVDGILFDLGVSSPQFDTGSRGFSYNYDA 120

Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM  S  + A  +VN    + +  IL    +EK A +IA  I ++RQ  P +TT +
Sbjct: 121 RLDMRMDTSNPLDAYAIVNTWPYERIVEILYKYADEKFAKQIARKIEQKRQIRPIETTFE 180

Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I+  +  F++    HPA R+FQALRI VN+E+    + L+ +   L  GG + V++
Sbjct: 181 LVDIIKDAIPAFARRKGGHPAKRTFQALRIAVNDELNVFDRALKDSLDLLNVGGRISVIT 240

Query: 250 FHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLED++ K  F   +  K +     +  +     F+ I KK +V ++E++  N R+ S
Sbjct: 241 FHSLEDKICKYTFNDVTKLKDVPPGLPVIPDYLQPRFKLINKKAMVASKEELEVNHRAHS 300

Query: 309 AKLRAGMRTVE 319
           AKLR   R  E
Sbjct: 301 AKLRIIEREFE 311


>gi|291542210|emb|CBL15320.1| S-adenosyl-methyltransferase MraW [Ruminococcus bromii L2-63]
          Length = 307

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 113/304 (37%), Positives = 170/304 (55%), Gaps = 7/304 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77
           H+PVLLE+ +  L      + +D T G GG+S           +I++D+DP A+    E 
Sbjct: 5   HIPVLLEQAVDALAVKENGIYVDGTAGGGGHSSEILSRLTTGKLISIDQDPDAILTLTER 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
            +   E   + +  F+ +   +  +GV   DGV+ D+GVSS Q+D  +RGFSF +  PLD
Sbjct: 65  FKK-NENSIIIKGNFADMVSLLHSRGVGRVDGVLLDIGVSSHQLDTAERGFSFHEDAPLD 123

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRMS SG +A+++VN     +L RIL + GEEK A  I + IVK R   P +TT +L+ +
Sbjct: 124 MRMSQSGTTAAELVNTLPAGELRRILSVYGEEKFAVAIVNGIVKARAEKPIETTLELAEI 183

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           I++ V        HPA +SFQALRI VN+E+  L +GL  A + L +GG L V++FHSLE
Sbjct: 184 IKENVPQRVRRDGHPARKSFQALRIAVNDELGVLERGLDGAFELLGSGGRLAVITFHSLE 243

Query: 255 DRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           DR+VK+  AS        +   +    +    + + +K V   + ++  N R+RSAKLR 
Sbjct: 244 DRIVKQKMASWCQGCTCPKDFPVCVCGNKPKAKLVVRKPVCANETELRNNPRARSAKLRI 303

Query: 314 GMRT 317
             + 
Sbjct: 304 CEKI 307


>gi|325697683|gb|EGD39568.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus sanguinis SK160]
          Length = 316

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 100/319 (31%), Positives = 170/319 (53%), Gaps = 15/319 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           M++  H     H+ VLL + +  L   P  + +DAT G  G+S           ++ A D
Sbjct: 1   MTNEFH-----HITVLLHETVDQLAVKPDGIYVDATLGGAGHSEYLLSQLGDEGHLYAFD 55

Query: 66  RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120
           +D  A+   ++ +  Y E+   +  +  F  L+  + + GV   DG+ +DLGVSS Q+D 
Sbjct: 56  QDQTAIDNAKKRLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQ 115

Query: 121 GDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS+++  PLDMRM+    ++A +VVN  + +DL RI    GE+K + +IA  I + 
Sbjct: 116 RERGFSYKQDAPLDMRMNREAALTAFEVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQA 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R   P +TT +L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   
Sbjct: 176 RSIKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDL 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L   G + V++FHSLEDRL K+ F   S   +        +      + +++K ++P++E
Sbjct: 236 LAVDGRIAVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKLELVSRKPILPSKE 295

Query: 299 DVAFNRRSRSAKLRAGMRT 317
           ++  N R+ SAKLR   + 
Sbjct: 296 ELESNNRAHSAKLRVARKI 314


>gi|68565437|sp|Q5M2U6|RSMH_STRT2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 316

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 104/320 (32%), Positives = 167/320 (52%), Gaps = 15/320 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M++  H     HV VLL + + +L+  P  + +DAT G  G+S           ++   D
Sbjct: 1   MTNEFH-----HVTVLLHETVDMLDIKPDGIYVDATLGGAGHSSYLLSQLSEKGHLYCFD 55

Query: 66  RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120
           +D  A+   Q  ++DY ++   +  +  F  L+  +   GV   DG+++DLGVSS Q+D 
Sbjct: 56  QDQKAIDNAQVRLKDYIDKGMVTFIKDNFRNLKSNLEALGVSEIDGILYDLGVSSPQLDE 115

Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS+++   LDMRM+    ++A DVVN     DL RI    GE+K + +IA  I + 
Sbjct: 116 RERGFSYKQDAKLDMRMNEEASLTAYDVVNTYPYNDLVRIFFKYGEDKFSKQIARKIEQA 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           RQ  P +TT +L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   
Sbjct: 176 RQVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQEALDL 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L   G + V++FHSLEDRL K+ F   S   +                 + +K ++P+QE
Sbjct: 236 LAVNGRISVITFHSLEDRLTKQLFKEASTADVPKGLPFIPEDLQPKVALVNRKPILPSQE 295

Query: 299 DVAFNRRSRSAKLRAGMRTV 318
           ++  N RS SAKLR   +  
Sbjct: 296 ELEANNRSHSAKLRVAKKIR 315


>gi|148265993|ref|YP_001232699.1| S-adenosyl-methyltransferase MraW [Geobacter uraniireducens Rf4]
 gi|146399493|gb|ABQ28126.1| S-adenosyl-methyltransferase MraW [Geobacter uraniireducens Rf4]
          Length = 303

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 122/303 (40%), Positives = 176/303 (58%), Gaps = 9/303 (2%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETMRD 80
           +  +VI  L P  G + +D T G GG++R   +  +    +I  DRD  A++   E +  
Sbjct: 1   MAAEVIQYLAPRAGGIYVDGTLGGGGHARQILEASAPDGLLIGFDRDREAIAIAAERLAP 60

Query: 81  YKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
           Y E+  L Q  F+ L + + + G+D +   + D+GVSS Q+D   RGFSFQ   PLDMRM
Sbjct: 61  YGERVRLVQRNFACLAETLDEMGIDAIDGFLLDVGVSSHQLDTAARGFSFQHDAPLDMRM 120

Query: 138 S-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
              SG SASD+VN  +  DL RI+   GEE+ A RIA  IVKRR+ +P +TT  L  +I+
Sbjct: 121 DVSSGQSASDLVNTLSEADLARIIWDYGEERWAKRIAAFIVKRREESPIETTMQLVDVIK 180

Query: 197 KTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
             V   + + R+HPATR+FQALRI VN+E+  L + L +  + LK GG  +V+SFHSLED
Sbjct: 181 GAVPRGAWDVRLHPATRTFQALRIAVNDELASLEKALAAGVRFLKKGGRGVVISFHSLED 240

Query: 256 RLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           R+VK  F S +      + +         + + IT K V+  + +V+ N RSRSA+LRA 
Sbjct: 241 RIVKTSFRSFAQGCTCPKSIPRCVCGKLPLVKVITGKPVMANEAEVSMNPRSRSARLRAA 300

Query: 315 MRT 317
            + 
Sbjct: 301 EKI 303


>gi|332364602|gb|EGJ42371.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus sanguinis SK1059]
          Length = 316

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 100/319 (31%), Positives = 170/319 (53%), Gaps = 15/319 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           M++  H     H+ VLL + +  L   P  + +DAT G  G+S           ++ A D
Sbjct: 1   MTNEFH-----HITVLLHETVDQLAVKPDGIYVDATLGGAGHSEYLLSQLGDEGHLYAFD 55

Query: 66  RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120
           +D  A+   ++ +  Y E+   +  +  F  L+  + + GV   DG+ +DLGVSS Q+D 
Sbjct: 56  QDQTAIDNAKKRLAPYIERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQ 115

Query: 121 GDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS+++  PLDMRM+    ++A +VVN  + +DL RI    GE+K + +IA  I + 
Sbjct: 116 RERGFSYKQDAPLDMRMNRDAALTAFEVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQA 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R   P +TT +L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   
Sbjct: 176 RSVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDL 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L   G + V++FHSLEDRL K+ F   S   +        +      + +++K ++P++E
Sbjct: 236 LAVDGRIAVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKLELVSRKPILPSKE 295

Query: 299 DVAFNRRSRSAKLRAGMRT 317
           ++  N R+ SAKLR   + 
Sbjct: 296 ELESNNRAHSAKLRVARKI 314


>gi|227544880|ref|ZP_03974929.1| S-adenosyl-methyltransferase [Lactobacillus reuteri CF48-3A]
 gi|300909900|ref|ZP_07127360.1| S-adenosyl-methyltransferase MraW [Lactobacillus reuteri SD2112]
 gi|154705578|gb|ABS84215.1| S-adenosyl-methyltransferase MraW [Lactobacillus reuteri]
 gi|227185154|gb|EEI65225.1| S-adenosyl-methyltransferase [Lactobacillus reuteri CF48-3A]
 gi|300892548|gb|EFK85908.1| S-adenosyl-methyltransferase MraW [Lactobacillus reuteri SD2112]
          Length = 318

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 119/313 (38%), Positives = 183/313 (58%), Gaps = 13/313 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76
            HV VLL++ +A LN  P    +DAT G GG++++  +     ++ + D+D  A++  +E
Sbjct: 5   KHVTVLLKEAVAGLNVQPTGTYVDATLGGGGHTQAILQQLVDGHLYSFDQDQTAINYNKE 64

Query: 77  TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            ++   EQ   +L +  F  L+  +    V   +G+++DLGVSS Q D   RGFS+Q   
Sbjct: 65  QLKTAIEQQKLTLIEDNFRNLKAELDSYNVKHVNGILYDLGVSSPQFDDAKRGFSYQHDA 124

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+    +SA +VVN+ + + L +IL   GEEK A  IA  I +RR+ AP +TT +
Sbjct: 125 PLDMRMNQEQKLSAMEVVNEWSYERLVKILYRYGEEKFAKSIARKIEQRRKIAPIKTTFE 184

Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I++ +  + + +  HPA +SFQA+RI VN+E+  L + L  A   L  GG + V++
Sbjct: 185 LVDVIKEGIPAAARRHGGHPAKKSFQAIRIAVNDELGALEESLEQALDLLDVGGRISVIT 244

Query: 250 FHSLEDRLVKKFFASR---SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           F SLEDRLVK  F  +   SG V     +IP+   P  F+ I KK +V ++E++A N R+
Sbjct: 245 FQSLEDRLVKTMFREKTSLSGDVPQGLPVIPAGMEPN-FKLINKKPIVASEEELAANHRA 303

Query: 307 RSAKLRAGMRTVE 319
            SAKLR   +  E
Sbjct: 304 HSAKLRIIEKIRE 316


>gi|81428357|ref|YP_395357.1| PutativeS-adenosylmethionine-dependent-methyltran sferase
           [Lactobacillus sakei subsp. sakei 23K]
 gi|88909201|sp|Q38XN3|RSMH_LACSS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|78609999|emb|CAI55047.1| PutativeS-adenosylmethionine-dependent-methyltransferase
           [Lactobacillus sakei subsp. sakei 23K]
          Length = 318

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 102/314 (32%), Positives = 174/314 (55%), Gaps = 10/314 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73
               H  VLL++ +  LN  P  + +DAT G GG+S          ++ + D+D  A+  
Sbjct: 3   ETFKHQSVLLKETVDALNVQPDGIYVDATLGGGGHSEYLLSQLTTGHLYSFDQDDHALES 62

Query: 74  GQETMRDYKE--QFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQ 128
            ++ +  Y +  Q +  ++ F  L+  + ++G+   DG+++DLGVSS Q D   RGFS++
Sbjct: 63  SRQRLAKYADAGQVTFIKSNFRFLKIALAEQGITKIDGILYDLGVSSPQFDDAQRGFSYK 122

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           K  PLDMRM   + ++A  VVN+ + + L +I    GEEK + ++A  I ++R+ AP +T
Sbjct: 123 KEAPLDMRMDQGAELTAYTVVNEWSYQQLIKIFFRYGEEKFSKQVARKIEQQREIAPIET 182

Query: 188 TQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T  L+ LI++ +   ++    HPA R FQA+RI VN+E+  +   +  A   +K GG + 
Sbjct: 183 TIQLADLIKEAIPAPARRTGGHPAKRIFQAIRIAVNDELGAIEDSVEQAIPLVKVGGRIS 242

Query: 247 VVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           +++F SLEDRLVK  F  ++    +     I       V + + +K ++PT++++  N R
Sbjct: 243 IITFQSLEDRLVKTMFKEQATLPDIPKGLPIMPGTEKTVLKLVNRKPILPTEDELTVNHR 302

Query: 306 SRSAKLRAGMRTVE 319
           + SAKLR   +  E
Sbjct: 303 AHSAKLRVAEKQKE 316


>gi|295106887|emb|CBL04430.1| S-adenosyl-methyltransferase MraW [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 323

 Score =  379 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 115/322 (35%), Positives = 181/322 (56%), Gaps = 14/322 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65
           M+S        H PVLL + +   N  P +  +DAT G  G+S    K+   G  +I +D
Sbjct: 1   MTSEYQQQEFQHTPVLLAECLEQSNLKPQQTFVDATLGGAGHSLEMAKLIGPGGTLIGID 60

Query: 66  RDPFAVSCGQETMRDYKE----QFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQI 118
           +D  A++  +  +    +       L +  F  + D +      GVD  +FDLGVSS+QI
Sbjct: 61  QDEVALAAARSRLESLPDGQRPNLELLRGNFGDMDDLLVSAEVPGVDAFLFDLGVSSVQI 120

Query: 119 DCGDRGFSFQKSGPLDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
           D   RGFSF+++GPLDMRM    + ++A+++VN  N  DLTRI+    +EK ASRIA  I
Sbjct: 121 DTPSRGFSFKENGPLDMRMDPGKTTLTAAEIVNTYNAADLTRIIRAYSDEKWASRIADFI 180

Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           V+ R +   +T++ L  +I+  +   ++    HPA R+FQALRI VN+E++ L +GL +A
Sbjct: 181 VRSRANGRIETSEQLVDVIKAAIPASARRAGGHPAKRTFQALRIEVNSELDVLRRGLDAA 240

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVV 294
            + L  GG L+V+S+HSLEDR+VK+ F + + +        +       +   +T+K ++
Sbjct: 241 VRWLNPGGRLVVISYHSLEDRIVKETFNAYANRCTCPPDLPVCVCGKEPILDLVTRKPLL 300

Query: 295 PTQEDVAFNRRSRSAKLRAGMR 316
           PT  ++  N R+RSAKLR   +
Sbjct: 301 PTAGEIERNPRARSAKLRVARK 322


>gi|251783120|ref|YP_002997423.1| S-adenosyl-methyltransferase MraW [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
 gi|242391750|dbj|BAH82209.1| S-adenosyl-methyltransferase mraW [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
          Length = 337

 Score =  379 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 108/328 (32%), Positives = 174/328 (53%), Gaps = 15/328 (4%)

Query: 1   MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-- 58
           ++  + K M+   H     HV VLL + + +L+  P  + +DAT G  G+S         
Sbjct: 14  LKYGTIKVMTKEFH-----HVTVLLHETVDMLDIKPNGIYVDATLGGSGHSAYLLSKLSE 68

Query: 59  -SNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGVD---GVVFDLG 112
             ++   D+D  A+   Q T++ Y  K Q +  +  F  L+  +   GVD   G+++DLG
Sbjct: 69  QGHLYCFDQDQKAIDNAQVTLKSYIDKGQVTFIKDNFRHLKARLTALGVDEIDGILYDLG 128

Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASR 171
           VSS Q+D  +RGFS+ +  PLDMRM   + ++A DVVN     DL +I    GE+K + +
Sbjct: 129 VSSPQLDERERGFSYNQDAPLDMRMDRQAPLTAYDVVNTYPFNDLVKIFFKYGEDKFSKQ 188

Query: 172 IAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQ 230
           IA  I + R   P +TT +L+ LI+      +   + HPA + FQA+RI VN+E+    +
Sbjct: 189 IARKIEQARAIKPIETTTELAELIKAAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADE 248

Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK 290
            ++ A + L   G + V++FHSLEDRL K+ F   S   +              F+ +++
Sbjct: 249 SIQDAMELLALDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPEDMKPTFELVSR 308

Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMRTV 318
           K ++P+QE++A N R+ SAKLR   +  
Sbjct: 309 KPILPSQEELAANNRAHSAKLRVAKKIR 336


>gi|42558979|sp|Q89FT9|RSMH_BRAJA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 329

 Score =  379 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 151/327 (46%), Positives = 202/327 (61%), Gaps = 5/327 (1%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCG 74
           +   H+PVL  + I  L P  G + +DATFGAGGYSR+     G+ +IA+DRD  A++ G
Sbjct: 2   SSAPHIPVLGREAIDHLAPREGGIYVDATFGAGGYSRAILDVPGTRLIAIDRDRTAIAGG 61

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV---SSMQIDCGDRGFSFQKSG 131
            E +     + +L +  FS L D    +GVD V   +     SSMQ+D   RGFSF+  G
Sbjct: 62  AELVERSAGRLTLVEDRFSHLADVCAAQGVDAVDGVVMDVGVSSMQLDQAGRGFSFRLDG 121

Query: 132 PLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           PLDMRM  +G +A+DVV +A+  DL  I+ +LGEE+ + R+A AIV  RQ  PF TT+ L
Sbjct: 122 PLDMRMGQAGPTAADVVARASEADLADIIYLLGEERHSRRVARAIVADRQETPFTTTRAL 181

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + L+ + V  SK   IHPATR+FQALRIFVN E+EEL   L +AE+ LK GG L+VVSFH
Sbjct: 182 ADLVGRVV-RSKPGDIHPATRTFQALRIFVNEELEELQTALTAAERVLKPGGRLVVVSFH 240

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+VK F A RS      RH+         FQ +T++ VV  +++VA N R+RSAKL
Sbjct: 241 SLEDRIVKNFLAERSKTGGGSRHLPEVAQTAPSFQLLTRRPVVAGEDEVAHNPRARSAKL 300

Query: 312 RAGMRTVERSIEDDSFVHLPRLPTLSQ 338
           RA  RT   + +DD     PRL  + +
Sbjct: 301 RAAERTSAPAHKDDQSSSWPRLSDVMR 327


>gi|116628390|ref|YP_821009.1| S-adenosyl-methyltransferase MraW [Streptococcus thermophilus
           LMD-9]
 gi|68565436|sp|Q5LY91|RSMH_STRT1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|122267015|sp|Q03J09|RSMH_STRTD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|116101667|gb|ABJ66813.1| Predicted S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [Streptococcus thermophilus
           LMD-9]
 gi|312279018|gb|ADQ63675.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Streptococcus thermophilus ND03]
          Length = 316

 Score =  379 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 109/321 (33%), Positives = 172/321 (53%), Gaps = 17/321 (5%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M++  H     HV VLL + + +L+  P  + +DAT G  G+S           ++   D
Sbjct: 1   MTNEFH-----HVTVLLHETVDMLDIKPDGIYVDATLGGAGHSSYLLSQLSEKGHLYCFD 55

Query: 66  RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120
           +D  A+   Q  ++DY ++   +  +  F  L+  +   GV   DG+++DLGVSS Q+D 
Sbjct: 56  QDQKAIDNAQVRLKDYIDKGMVTFIKDNFRNLKSNLEALGVSEIDGILYDLGVSSPQLDE 115

Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS+++   LDMRM+    ++A DVVN     DL RI    GE+K + +IA  I + 
Sbjct: 116 RERGFSYKQDAKLDMRMNEEASLTAYDVVNTYPYNDLVRIFFKYGEDKFSKQIARKIEQA 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           RQ  P +TT +L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   
Sbjct: 176 RQVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQEALDL 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297
           L   G + V++FHSLEDRL K+ F   S   V      IP +  P V   + +K ++P+Q
Sbjct: 236 LAVDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPEDLQPKV-ALVNRKPILPSQ 294

Query: 298 EDVAFNRRSRSAKLRAGMRTV 318
           E++  N RS SAKLR   +  
Sbjct: 295 EELEANNRSHSAKLRVAKKIR 315


>gi|323350327|ref|ZP_08085992.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus sanguinis VMC66]
 gi|322123512|gb|EFX95183.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus sanguinis VMC66]
          Length = 316

 Score =  379 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 100/319 (31%), Positives = 170/319 (53%), Gaps = 15/319 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           M++  H     H+ VLL + +  L   P  + +DAT G  G+S           ++ A D
Sbjct: 1   MTNEFH-----HITVLLHETVDQLAVKPDGIYVDATLGGAGHSEYLLSQLGDEGHLYAFD 55

Query: 66  RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120
           +D  A+   ++ +  Y E+   +  +  F  L+  + + GV   DG+ +DLGVSS Q+D 
Sbjct: 56  QDQMAIDNAKKRLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQ 115

Query: 121 GDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS+++  PLDMRM+    ++A +VVN  + +DL RI    GE+K + +IA  I + 
Sbjct: 116 RERGFSYKQDAPLDMRMNREAALTAFEVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQA 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R   P +TT +L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   
Sbjct: 176 RSVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDL 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L   G + V++FHSLEDRL K+ F   S   +        +      + +++K ++P++E
Sbjct: 236 LAVDGRIAVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKLELVSRKPILPSKE 295

Query: 299 DVAFNRRSRSAKLRAGMRT 317
           ++  N R+ SAKLR   + 
Sbjct: 296 ELESNNRAHSAKLRVARKI 314


>gi|293364229|ref|ZP_06610955.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus oralis ATCC 35037]
 gi|307702416|ref|ZP_07639372.1| S-adenosyl-methyltransferase MraW [Streptococcus oralis ATCC 35037]
 gi|291317075|gb|EFE57502.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus oralis ATCC 35037]
 gi|307623998|gb|EFO02979.1| S-adenosyl-methyltransferase MraW [Streptococcus oralis ATCC 35037]
          Length = 316

 Score =  379 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 106/319 (33%), Positives = 170/319 (53%), Gaps = 15/319 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M+   H     HV VLL + I +L+  P  + +DAT G  G+S           ++ A D
Sbjct: 1   MTKEFH-----HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFD 55

Query: 66  RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120
           +D  A+   Q+ +  Y E+   +  +  F  LQ  + + GV   DG+ +DLGVSS Q+D 
Sbjct: 56  QDQNAIDNAQKRLAPYIEKGMVTFIKDNFRHLQARLQEAGVQEIDGICYDLGVSSPQLDQ 115

Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS++K  PLDMRM+    ++A +VVN  +  DL RI    GE+K + +IA  I + 
Sbjct: 116 RERGFSYKKDAPLDMRMNQEASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQA 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R+  P +TT +L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   
Sbjct: 176 REVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDM 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L   G + V++FHSLEDRL K+ F   S   +        +      + +++K ++P+ E
Sbjct: 236 LALDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAE 295

Query: 299 DVAFNRRSRSAKLRAGMRT 317
           ++  N RS SAKLR   + 
Sbjct: 296 ELEANNRSHSAKLRVARKI 314


>gi|163816702|ref|ZP_02208065.1| hypothetical protein COPEUT_02892 [Coprococcus eutactus ATCC 27759]
 gi|158447959|gb|EDP24954.1| hypothetical protein COPEUT_02892 [Coprococcus eutactus ATCC 27759]
          Length = 311

 Score =  379 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 102/305 (33%), Positives = 169/305 (55%), Gaps = 9/305 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQE 76
           H  VLLE+ I  LN  P  + +D T G  G+S         G  +I +D+D  A++   +
Sbjct: 5   HKSVLLEETIDNLNIKPDGIYVDGTLGGAGHSEQIVRRLGEGGKLIGIDQDEDAIAAATK 64

Query: 77  TMRDYKEQFSLFQAT---FSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  YK++ ++ +     F ++ D +  + VDG++ DLGVSS Q+D  DRGF+++   PL
Sbjct: 65  RLEPYKDKVTIVRDNYQNFRRILDELNIQKVDGILLDLGVSSYQLDNADRGFTYRVDAPL 124

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM      +A D+VN+    +L RIL   GEE+ A  IA+ I K RQ     TT++L+
Sbjct: 125 DMRMDNRQSKTAKDIVNEYPEAELFRILRDYGEERYAKSIAYHICKYRQDKEIDTTEELN 184

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+ ++    +N + HP+ ++FQA+RI +N E++ L   +     +L  GG L +++FH
Sbjct: 185 DIIRGSIPAKARNGQGHPSKQTFQAIRIELNRELDVLRDSIDGMIASLNPGGRLCIITFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK  F       +      + +    +  + IT+K ++P + ++  N RS+S+K
Sbjct: 245 SLEDRIVKTAFRKNENPCICPPNFPVCTCGRKSRGRVITRKPIIPGERELIENSRSKSSK 304

Query: 311 LRAGM 315
           LR   
Sbjct: 305 LRVFE 309


>gi|296877054|ref|ZP_06901095.1| S-adenosyl-methyltransferase MraW [Streptococcus parasanguinis ATCC
           15912]
 gi|296431915|gb|EFH17721.1| S-adenosyl-methyltransferase MraW [Streptococcus parasanguinis ATCC
           15912]
          Length = 316

 Score =  379 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 105/319 (32%), Positives = 169/319 (52%), Gaps = 15/319 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           MS   H     HV VLL + I +L+  P  + +DAT G  G+S           ++ A D
Sbjct: 1   MSKEFH-----HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLTKLNESGHLYAFD 55

Query: 66  RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120
           +D  A+   +  +  + E+   +  +  F  L++ + D GV   +G+ +DLGVSS Q+D 
Sbjct: 56  QDQHAIENAKIRLAPFIEKGMVTFIKDNFRHLKERLNDIGVTEINGICYDLGVSSPQLDE 115

Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS++K  PLDMRM+    ++A +VVN  +  DL RI    GE+K + +IA  I + 
Sbjct: 116 RERGFSYKKDAPLDMRMNQEASLTAYEVVNTYDYHDLVRIFFKYGEDKFSKQIARKIEQA 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R   P +TT +L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   
Sbjct: 176 RAIKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDL 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L   G + V++FHSLEDRL K+ F   S   +        +      + I +K ++P++E
Sbjct: 236 LALDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELINRKPILPSEE 295

Query: 299 DVAFNRRSRSAKLRAGMRT 317
           ++  N RS SAKLR   + 
Sbjct: 296 ELEENNRSHSAKLRVARKI 314


>gi|240850900|ref|YP_002972300.1| S-adenosyl-methyltransferase MraW [Bartonella grahamii as4aup]
 gi|263445977|sp|C6AEK6|RSMH_BARGA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|240268023|gb|ACS51611.1| S-adenosyl-methyltransferase MraW [Bartonella grahamii as4aup]
          Length = 332

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 162/322 (50%), Positives = 213/322 (66%), Gaps = 3/322 (0%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+PVLL+ V+A L P  G  ++D TFGAGGY+ +  K G+ VIALDRDP A+S GQ  + 
Sbjct: 11  HIPVLLQPVLAGLMPLVGAKVIDGTFGAGGYTCALLKAGAEVIALDRDPHAISAGQSLVE 70

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
           ++  +  L Q  FSQL   V +  VD V+ D+GVSSMQ+D  +RGFSFQK GPLDMRM+ 
Sbjct: 71  EFFPRLRLVQMEFSQLDRVVEE-KVDAVILDIGVSSMQLDEAERGFSFQKDGPLDMRMAQ 129

Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199
           +G +A DVVN    +DL RI  ILGEE+ A RIA  I KRR   PF  T DL+  I+  +
Sbjct: 130 TGFTAGDVVNHLKARDLARIFKILGEERYAGRIARMIEKRRVVQPFLRTGDLAYAIEALI 189

Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259
                +RIHPATR FQALRI+VN+EI ELA+GL +AE+ LK GG L VVSFHSLEDR+VK
Sbjct: 190 GRKPGDRIHPATRVFQALRIYVNDEIGELARGLFAAERILKPGGRLGVVSFHSLEDRMVK 249

Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319
           +FF+ RSG+ M  R++      PA F  + K  +  ++E++  N RSRSA+LR G+RT  
Sbjct: 250 RFFSFRSGECMRSRYLPEIKTAPATFFPLFKGGITASEEELQQNPRSRSARLRIGVRTEA 309

Query: 320 RSIEDDSFVHLPRLPTLSQFRG 341
            ++  D  + L  L  ++ F G
Sbjct: 310 EALAAD--MKLFGLAEIASFEG 329


>gi|313899190|ref|ZP_07832710.1| S-adenosyl-methyltransferase MraW [Clostridium sp. HGF2]
 gi|312956013|gb|EFR37661.1| S-adenosyl-methyltransferase MraW [Clostridium sp. HGF2]
          Length = 311

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 117/311 (37%), Positives = 166/311 (53%), Gaps = 9/311 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           +  H  VLL + I  L      + +D T G GG+S          ++ A DRD  A+   
Sbjct: 1   MMKHYSVLLHESIDNLAIHSDGIYVDGTLGRGGHSAEILARIPQGHLYAFDRDASAIEKS 60

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +E +    +  +L  + FS L+  +  +GV   DG+V DLGVSS Q D   RGFS++   
Sbjct: 61  RERLAQIGDNVTLIHSNFSNLKRELTARGVTGIDGMVLDLGVSSPQFDEAQRGFSYRFDA 120

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  S  +SA  VVN+   ++L RI    GEE  A +IA  I K R+  P +TT  
Sbjct: 121 PLDMRMDQSQKLSAYQVVNEWEYQELVRIFFQFGEESFAKQIARKIEKAREVKPIETTFA 180

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I+  +     N + HPA + FQA+RI VN+E+ EL   LR A + L  GG L V+S
Sbjct: 181 LVDVIKSALPAKVLNKKGHPAKKVFQAIRIAVNDELGELQLVLRDALELLHVGGRLCVIS 240

Query: 250 FHSLEDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           F SLEDR+VK  F+S S      +   ++P +   A ++ + KK +  T+E++  N RS 
Sbjct: 241 FQSLEDRIVKDTFSSCSKPKQYDKRIPILPQDMEAAPYRLLNKKPITATEEELRENMRSH 300

Query: 308 SAKLRAGMRTV 318
           SAKLR   R  
Sbjct: 301 SAKLRCIERIR 311


>gi|322391027|ref|ZP_08064531.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus parasanguinis ATCC 903]
 gi|321142257|gb|EFX37731.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus parasanguinis ATCC 903]
          Length = 316

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 104/319 (32%), Positives = 169/319 (52%), Gaps = 15/319 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           MS   H     HV VLL + I +L+  P  + +DAT G  G+S           ++ A D
Sbjct: 1   MSKEFH-----HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLTKLNESGHLYAFD 55

Query: 66  RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120
           +D  A+   +  +  + E+   +  +  F  L++ + + GV   DG+ +DLGVSS Q+D 
Sbjct: 56  QDQHAIENAKIRLAPFIEKGMVTFIKDNFRHLKERLNELGVTEIDGICYDLGVSSPQLDE 115

Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS++K  PLDMRM+    ++A +VVN  +  DL RI    GE+K + +IA  I + 
Sbjct: 116 RERGFSYKKDAPLDMRMNQEASLTAYEVVNSYDYHDLVRIFFKYGEDKFSKQIARKIEQA 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R   P +TT +L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   
Sbjct: 176 RAIKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDL 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L   G + V++FHSLEDRL K+ F   S   +        +      + + +K ++P++E
Sbjct: 236 LALDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVNRKPILPSEE 295

Query: 299 DVAFNRRSRSAKLRAGMRT 317
           ++  N RS SAKLR   + 
Sbjct: 296 ELEENNRSHSAKLRVARKI 314


>gi|270292146|ref|ZP_06198361.1| S-adenosyl-methyltransferase MraW [Streptococcus sp. M143]
 gi|270279674|gb|EFA25516.1| S-adenosyl-methyltransferase MraW [Streptococcus sp. M143]
          Length = 316

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 107/319 (33%), Positives = 171/319 (53%), Gaps = 15/319 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M+   H     HV VLL + I +L+  P  + +DAT G  G+S           ++ A D
Sbjct: 1   MTKEFH-----HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFD 55

Query: 66  RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120
           +D  A+   Q+ +  Y E+   +  +  F  LQ  + D GV   DG+ +DLGVSS Q+D 
Sbjct: 56  QDQNAIDNAQKRLAPYIEKGMVTFIKDNFRHLQARLQDAGVQEIDGICYDLGVSSPQLDQ 115

Query: 121 GDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS++K  PLDMRM+  + ++A +VVN  +  DL RI    GE+K + +IA  I + 
Sbjct: 116 RERGFSYKKDAPLDMRMNQGASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQA 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R+  P +TT +L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   
Sbjct: 176 REVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDM 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L   G + V++FHSLEDRL K+ F   S   +        +      + +++K ++P+ E
Sbjct: 236 LALDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAE 295

Query: 299 DVAFNRRSRSAKLRAGMRT 317
           ++  N RS SAKLR   + 
Sbjct: 296 ELEANNRSHSAKLRVARKI 314


>gi|324991745|gb|EGC23677.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus sanguinis SK353]
          Length = 316

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 100/319 (31%), Positives = 170/319 (53%), Gaps = 15/319 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M++  H     H+ VLL + +  L   P  + +DAT G  G+S           ++ A D
Sbjct: 1   MTNEFH-----HITVLLHETVDQLAVKPDGIYVDATLGGAGHSEYLLSQLRDEGHLYAFD 55

Query: 66  RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120
           +D  A+   ++ +  Y E+   +  +  F  L+  + + GV   DG+ +DLGVSS Q+D 
Sbjct: 56  QDQTAIDNAKKRLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQ 115

Query: 121 GDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS+++  PLDMRM+    ++A +VVN  + +DL RI    GE+K + +IA  I + 
Sbjct: 116 RERGFSYKQDAPLDMRMNREAALTAFEVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQA 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R   P +TT +L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   
Sbjct: 176 RSIKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDL 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L   G + V++FHSLEDRL K+ F   S   +        +      + +++K ++P++E
Sbjct: 236 LAVDGRIAVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKLELVSRKPILPSKE 295

Query: 299 DVAFNRRSRSAKLRAGMRT 317
           ++  N R+ SAKLR   + 
Sbjct: 296 ELESNNRAHSAKLRVARKI 314


>gi|260430921|ref|ZP_05784892.1| S-adenosyl-methyltransferase MraW [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260414749|gb|EEX08008.1| S-adenosyl-methyltransferase MraW [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 331

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 148/327 (45%), Positives = 198/327 (60%), Gaps = 7/327 (2%)

Query: 9   MSSAIH-HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDR 66
           M+ A H  T   H+PVLL  ++  + P      LD TFGAGGY+R   + G+  VI +DR
Sbjct: 1   MAGADHTPTDKPHIPVLLRPLLDAVRPVS-GTWLDGTFGAGGYTRGLLEAGADRVIGVDR 59

Query: 67  DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126
           DP A     +   +Y ++  +    FS++ +Y  D  +DGVV DLGVSSMQ+D  +RGFS
Sbjct: 60  DPLAFEMAADWAAEYGDRLVMQPGVFSRMDEYASD--LDGVVLDLGVSSMQLDQAERGFS 117

Query: 127 FQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           F K GPLDMRMS  G SA+D+VN A    L  IL   GEE+ + RIA AIVK R  AP  
Sbjct: 118 FMKDGPLDMRMSQEGESAADLVNTATEAQLADILFHYGEERASRRIARAIVKARAEAPIT 177

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           TT  L+ +++  +  +K  + HPATRSFQALRI VN E EEL QGL +AE+ALK GG L 
Sbjct: 178 TTLRLAEIVESCLPRAKPGQSHPATRSFQALRIAVNAEYEELFQGLMAAERALKPGGKLA 237

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPS-NAHPAVFQSITKKVVVPTQEDVAFNRR 305
           VV+FHS+EDR+VK+F  +R+GK        P        F   T+K + P  +++  N R
Sbjct: 238 VVTFHSVEDRMVKRFLQARAGKTGRANRYAPEIQQDQPQFTLKTRKAIGPDAQELQDNPR 297

Query: 306 SRSAKLRAGMRTVERSIEDDSF-VHLP 331
           +RSAKLR  +RT   + E D+  + +P
Sbjct: 298 ARSAKLRVAVRTDAPAGEIDARAIGMP 324


>gi|324992001|gb|EGC23923.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus sanguinis SK405]
 gi|325688754|gb|EGD30763.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus sanguinis SK115]
 gi|327490522|gb|EGF22303.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus sanguinis SK1058]
          Length = 316

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 100/319 (31%), Positives = 170/319 (53%), Gaps = 15/319 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           M++  H     H+ VLL + +  L   P  + +DAT G  G+S           ++ A D
Sbjct: 1   MTNEFH-----HITVLLHETVDQLAVKPDGIYIDATLGGAGHSEYLLSQLGDEGHLYAFD 55

Query: 66  RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120
           +D  A+   ++ +  Y E+   +  +  F  L+  + + GV   DG+ +DLGVSS Q+D 
Sbjct: 56  QDQTAIDNAKKRLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQ 115

Query: 121 GDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS+++  PLDMRM+    ++A +VVN  + +DL RI    GE+K + +IA  I + 
Sbjct: 116 RERGFSYKQDAPLDMRMNREAALTAFEVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQA 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R   P +TT +L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   
Sbjct: 176 RSVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDL 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L   G + V++FHSLEDRL K+ F   S   +        +      + +++K ++P++E
Sbjct: 236 LAVDGRIAVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKLELVSRKPILPSKE 295

Query: 299 DVAFNRRSRSAKLRAGMRT 317
           ++  N R+ SAKLR   + 
Sbjct: 296 ELESNNRAHSAKLRVARKI 314


>gi|148543819|ref|YP_001271189.1| S-adenosyl-methyltransferase MraW [Lactobacillus reuteri DSM 20016]
 gi|184153222|ref|YP_001841563.1| hypothetical protein LAR_0567 [Lactobacillus reuteri JCM 1112]
 gi|227364723|ref|ZP_03848772.1| S-adenosyl-methyltransferase [Lactobacillus reuteri MM2-3]
 gi|325682650|ref|ZP_08162167.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Lactobacillus reuteri MM4-1A]
 gi|263456253|sp|A5VJ28|RSMH_LACRD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263456260|sp|B2G6K1|RSMH_LACRJ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|148530853|gb|ABQ82852.1| S-adenosyl-methyltransferase MraW [Lactobacillus reuteri DSM 20016]
 gi|183224566|dbj|BAG25083.1| conserved hypothetical protein [Lactobacillus reuteri JCM 1112]
 gi|227070182|gb|EEI08556.1| S-adenosyl-methyltransferase [Lactobacillus reuteri MM2-3]
 gi|324978489|gb|EGC15439.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Lactobacillus reuteri MM4-1A]
          Length = 318

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 119/313 (38%), Positives = 180/313 (57%), Gaps = 13/313 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76
            HV VLL++ +A LN  P    +DAT G GG++++  +     ++ + D+D  A+   +E
Sbjct: 5   KHVTVLLKEAVAGLNVQPTGTYVDATLGGGGHTQAILQQLVDGHLYSFDQDQTAIDYNKE 64

Query: 77  TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            ++   EQ   +L +  F  L+  +    V   +G+++DLGVSS Q D   RGFS+Q   
Sbjct: 65  HLKTAIEQQKLTLVEDNFRNLKAELNSYNVKHVNGILYDLGVSSPQFDDAKRGFSYQHDA 124

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+    +SA +VVN+   + L +IL   GEEK A  IA  I +RR+ AP +TT +
Sbjct: 125 PLDMRMNQEQKLSAMEVVNEWPYERLVKILYRYGEEKFAKSIARKIEQRRKVAPIKTTFE 184

Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I++ +  + + +  HPA +SFQA+RI VN+E+  L + L  A   L  GG + V++
Sbjct: 185 LVDVIKEGIPAAARRHGGHPAKKSFQAIRIAVNDELGALEESLEQALDLLDVGGRISVIT 244

Query: 250 FHSLEDRLVKKFFASR---SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           F SLEDRLVK  F  +   SG V     +IP+   P  F+ I KK +V + E++A N R+
Sbjct: 245 FQSLEDRLVKTMFREKTSLSGDVPQGLPVIPAGMEPN-FKLINKKPIVASDEELAANHRA 303

Query: 307 RSAKLRAGMRTVE 319
            SAKLR   +  E
Sbjct: 304 HSAKLRIIEKIRE 316


>gi|327472730|gb|EGF18157.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus sanguinis SK408]
          Length = 316

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 100/319 (31%), Positives = 170/319 (53%), Gaps = 15/319 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           M++  H     H+ VLL + +  L   P  + +DAT G  G+S           ++ A D
Sbjct: 1   MTNEFH-----HITVLLHETVDQLAVKPDGIYIDATLGGAGHSEYLLSQLGDEGHLYAFD 55

Query: 66  RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120
           +D  A+   ++ +  Y E+   +  +  F  L+  + + GV   DG+ +DLGVSS Q+D 
Sbjct: 56  QDQTAIDNAKKRLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQ 115

Query: 121 GDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS+++  PLDMRM+    ++A +VVN  + +DL RI    GE+K + +IA  I + 
Sbjct: 116 RERGFSYKQDAPLDMRMNRDAALTAFEVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQA 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R   P +TT +L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   
Sbjct: 176 RSIKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDL 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L   G + V++FHSLEDRL K+ F   S   +        +      + +++K ++P++E
Sbjct: 236 LAVDGRIAVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKLELVSRKPILPSKE 295

Query: 299 DVAFNRRSRSAKLRAGMRT 317
           ++  N R+ SAKLR   + 
Sbjct: 296 ELESNNRAHSAKLRVARKI 314


>gi|262527565|sp|P62471|RSMH_LACJO RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 315

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 108/311 (34%), Positives = 169/311 (54%), Gaps = 13/311 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76
            H  VLL + I  LNP  G + +DATFG GG++R          VI  D+D +A+S  +E
Sbjct: 4   KHKSVLLHETIDNLNPKDGGLYVDATFGGGGHARYLLSKLNKGTVIGFDQDEYAISMAKE 63

Query: 77  TMRD-----YKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSF 127
           +         + +  L    F  L++ + +     G+DG+ +DLGVSS Q D  +RGFS+
Sbjct: 64  SFAKELQVGAEPRLMLVHDNFCHLKENLVELGISDGIDGIYYDLGVSSPQFDQPERGFSY 123

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           +    LDMRM  S  + A  +VN  + K+L+ +L   G+EK + +IA  IV RR+  P  
Sbjct: 124 RFDARLDMRMDQSQELDAYTIVNTWSQKELSDVLYKYGDEKFSRQIARKIVDRRKEKPIV 183

Query: 187 TTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           TT DL  +I+  +   ++ +  HPA +SFQA+R+ VN+E+  L + L  A K LK GG +
Sbjct: 184 TTFDLVDVIKDAIPAYARRSGGHPAKKSFQAIRVAVNDELGVLQESLEEAIKLLKPGGRI 243

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
            V++F S ED++VKK F   S   +     +         + I++K ++ + +++  N R
Sbjct: 244 SVITFQSHEDKIVKKIFKKYSEVEIPRGMPMVPADSKPTLRLISRKPIMASSDELEENNR 303

Query: 306 SRSAKLRAGMR 316
           S SAKLR   +
Sbjct: 304 SHSAKLRVAEK 314


>gi|327459305|gb|EGF05651.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus sanguinis SK1]
          Length = 316

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 100/319 (31%), Positives = 170/319 (53%), Gaps = 15/319 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           M++  H     H+ VLL + +  L   P  + +DAT G  G+S           ++ A D
Sbjct: 1   MTNEFH-----HITVLLHETVDQLAVKPDGIYIDATLGGAGHSEYLLSQLGDEGHLYAFD 55

Query: 66  RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120
           +D  A+   ++ +  Y E+   +  +  F  L+  + + GV   DG+ +DLGVSS Q+D 
Sbjct: 56  QDQTAIDNAKKRLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQ 115

Query: 121 GDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS+++  PLDMRM+    ++A +VVN  + +DL RI    GE+K + +IA  I + 
Sbjct: 116 RERGFSYKQDAPLDMRMNREAALTAFEVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQA 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R   P +TT +L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   
Sbjct: 176 RSIKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDL 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L   G + V++FHSLEDRL K+ F   S   +        +      + +++K ++P++E
Sbjct: 236 LAVDGRIAVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKLELVSRKPILPSKE 295

Query: 299 DVAFNRRSRSAKLRAGMRT 317
           ++  N R+ SAKLR   + 
Sbjct: 296 ELESNNRAHSAKLRVARKI 314


>gi|322391390|ref|ZP_08064860.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus peroris ATCC 700780]
 gi|321145816|gb|EFX41207.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus peroris ATCC 700780]
          Length = 316

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 106/319 (33%), Positives = 172/319 (53%), Gaps = 15/319 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M+   H     HV V+L + I +L+  P  + +DAT G  G+S           ++ A D
Sbjct: 1   MTKEFH-----HVTVMLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFD 55

Query: 66  RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120
           +D  A+   Q+ +  Y E+   +  +  F  L+D + D GV   DG+ +DLGVSS Q+D 
Sbjct: 56  QDQNAIDNAQKRLAPYIEKGMVTFIKDNFRHLKDRLHDLGVTEIDGICYDLGVSSPQLDQ 115

Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS++K  PLDMRM+    ++A +VVN  +  DL RI    GE+K + +IA  I + 
Sbjct: 116 RERGFSYKKDAPLDMRMNQEASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQA 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R+  P +TT +L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A + 
Sbjct: 176 RELKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIEL 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L   G + V++FHSLEDRL K+ F   S   +        +        +++K ++P++E
Sbjct: 236 LALDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMGLVSRKPILPSKE 295

Query: 299 DVAFNRRSRSAKLRAGMRT 317
           ++  N RS SAKLR   + 
Sbjct: 296 ELEANNRSHSAKLRVARKI 314


>gi|307704193|ref|ZP_07641116.1| S-adenosyl-methyltransferase MraW [Streptococcus mitis SK597]
 gi|307622224|gb|EFO01238.1| S-adenosyl-methyltransferase MraW [Streptococcus mitis SK597]
          Length = 316

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 106/319 (33%), Positives = 170/319 (53%), Gaps = 15/319 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M+   H     HV VLL + I +L+  P  + +DAT G  G+S           ++ A D
Sbjct: 1   MTKEFH-----HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFD 55

Query: 66  RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120
           +D  A+   Q+ +  Y E+   +  +  F  LQ  + + GV   DG+ +DLGVSS Q+D 
Sbjct: 56  QDQNAIDNAQQRLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQ 115

Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS++K  PLDMRM+    ++A +VVN  +  DL RI    GE+K + +IA  I + 
Sbjct: 116 RERGFSYKKDAPLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQA 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R+  P +TT +L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   
Sbjct: 176 REVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDM 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L   G + V++FHSLEDRL K+ F   S   +        +      + +++K ++P+ E
Sbjct: 236 LALDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAE 295

Query: 299 DVAFNRRSRSAKLRAGMRT 317
           ++  N RS SAKLR   + 
Sbjct: 296 ELEANNRSHSAKLRVARKI 314


>gi|257063602|ref|YP_003143274.1| S-adenosyl-methyltransferase MraW [Slackia heliotrinireducens DSM
           20476]
 gi|256791255|gb|ACV21925.1| S-adenosyl-methyltransferase MraW [Slackia heliotrinireducens DSM
           20476]
          Length = 318

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 114/311 (36%), Positives = 174/311 (55%), Gaps = 14/311 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS---FCKMGSNVIALDRDPFAVSCGQE 76
           H PVLL + +  L+       +D+T G  G+S          S +I +D+D  A+   ++
Sbjct: 7   HTPVLLAECLEHLHLQTQHTFVDSTLGGAGHSYEAAKLLGPDSLLIGIDQDQMALDAARK 66

Query: 77  TMR----DYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
            +     D   +  L +  F  L D + +    G+D ++FDLGVSS QID   RGFSF++
Sbjct: 67  RLETLGEDAAPKLKLLRGNFGNLDDLLVEACVPGIDAILFDLGVSSPQIDFVSRGFSFKE 126

Query: 130 SGPLDMRMSCSGIS--ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
             PLDMRM     +  A++++N  N ++LTRI+    +E+ ASRIA  IV  R++AP +T
Sbjct: 127 DAPLDMRMDPGNQTINAAELINTLNEQELTRIIYENSDERWASRIASFIVAARETAPIET 186

Query: 188 TQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           +  L  +I+  +   ++    HPA R+FQALRI VN+E+  L  GL +A + L  GG + 
Sbjct: 187 SGQLVDIIKAAIPASARRAGGHPAKRTFQALRIEVNSELTVLKSGLEAAIRWLNPGGRVA 246

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           V+S+HSLEDR+VK  FA  S          +       V + IT+K ++PT+E++A N R
Sbjct: 247 VISYHSLEDRIVKNMFAEHSRTCTCPPELPVCVCGAKPVLKVITRKPILPTEEEIANNPR 306

Query: 306 SRSAKLRAGMR 316
           +RSAKLR   +
Sbjct: 307 ARSAKLRVAEK 317


>gi|328945057|gb|EGG39213.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus sanguinis SK1087]
          Length = 316

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 100/319 (31%), Positives = 170/319 (53%), Gaps = 15/319 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           M++  H     H+ VLL + +  L   P  + +DAT G  G+S           ++ A D
Sbjct: 1   MTNEFH-----HITVLLHETVDQLAVKPDGIYVDATLGGAGHSEYLLSQLGDEGHLYAFD 55

Query: 66  RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120
           +D  A+   ++ +  Y E+   +  +  F  L+  + + GV   DG+ +DLGVSS Q+D 
Sbjct: 56  QDQMAIDNAKKRLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQ 115

Query: 121 GDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS+++  PLDMRM+    ++A +VVN  + +DL RI    GE+K + +IA  I + 
Sbjct: 116 RERGFSYKQDAPLDMRMNREAALTAFEVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQA 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R   P +TT +L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   
Sbjct: 176 RSVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDL 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L   G + V++FHSLEDRL K+ F   S   +        +      + +++K ++P++E
Sbjct: 236 LAVDGRIAVITFHSLEDRLTKQLFKDASTVDVPKGLPFIPDELQPKLELVSRKPILPSKE 295

Query: 299 DVAFNRRSRSAKLRAGMRT 317
           ++  N R+ SAKLR   + 
Sbjct: 296 ELESNNRAHSAKLRVARKI 314


>gi|259047019|ref|ZP_05737420.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Granulicatella adiacens ATCC 49175]
 gi|259036338|gb|EEW37593.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Granulicatella adiacens ATCC 49175]
          Length = 314

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 104/312 (33%), Positives = 171/312 (54%), Gaps = 11/312 (3%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74
           +  H+ VLL + +  L+  P  + +D T G  G+S+         ++   D+D  A+   
Sbjct: 1   MFKHITVLLHETVDALSIKPDGIYVDCTLGGAGHSQYLLSQLTTGHLYCFDQDMQAIQHA 60

Query: 75  QETMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQK 129
           +  +     + + +   A F QL+  +   GV   DG+++DLGVSS Q+D  +RGFS+ +
Sbjct: 61  KARLAKEVSEGKVTFIHANFRQLKIELGKLGVSKVDGILYDLGVSSPQLDQIERGFSYHQ 120

Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           +  LDMRM  S  ++A ++VN+ +  +L RI    GEEK + +IA  I + R     +TT
Sbjct: 121 NAKLDMRMDQSAPLTAEEIVNEWSYDELVRIFYRYGEEKFSKQIARNIERIRAQHRIETT 180

Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L  +I+ ++  + +    HPA R FQA+RI VN+E+  +   L  A + +  GG + V
Sbjct: 181 GELVDIIRDSIPAAARRKGGHPAKRIFQAIRIAVNDELAAIEDSLEQAFEVVSVGGRISV 240

Query: 248 VSFHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           +SFHSLEDR+VK  F  +S   K      ++P+    A FQ + KK ++P+ E++  N R
Sbjct: 241 ISFHSLEDRIVKTMFKQQSTVEKAPKNLPILPTEEEKAPFQLVNKKPILPSLEEITENSR 300

Query: 306 SRSAKLRAGMRT 317
           S+SAKLR   + 
Sbjct: 301 SQSAKLRVIEKI 312


>gi|261367518|ref|ZP_05980401.1| S-adenosyl-methyltransferase MraW [Subdoligranulum variabile DSM
           15176]
 gi|282570299|gb|EFB75834.1| S-adenosyl-methyltransferase MraW [Subdoligranulum variabile DSM
           15176]
          Length = 307

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 116/305 (38%), Positives = 165/305 (54%), Gaps = 9/305 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77
           H+PVLL+  +  L   P  + LD T G  G+S    K      +I+LD+DP AV+   E 
Sbjct: 5   HIPVLLQPCLDGLAIDPTGIYLDGTAGGAGHSMQIAKRLTTGRLISLDQDPDAVAVATER 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++    Q    QA F      + +     V+G + DLGVSS Q+D   RGFS+    PLD
Sbjct: 65  LKGLPAQV--VQANFRDAARVLAELSIPAVNGALLDLGVSSHQLDDAARGFSYHADAPLD 122

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRMS  G +A+D+VN  + ++LTRIL   GEE  A +IA  IV  R   P  TT  L+ L
Sbjct: 123 MRMSQQGPTAADLVNTLDREELTRILRDYGEEPYAWQIAGKIVATRAEQPITTTLQLADL 182

Query: 195 IQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           +   V  ++  +  +PA R+FQA+RI VN+E++ L +GL +    L  GG L V++FHSL
Sbjct: 183 VASAVPPAERRKAKNPARRTFQAIRIAVNSELDVLNEGLDAIFNCLAPGGRLCVITFHSL 242

Query: 254 EDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           EDRLVK  F   + +        I +       + IT+K +    E++  NRR+RSAKLR
Sbjct: 243 EDRLVKNKFRRWAQRCTCPPEQPICTCGGVPKAKLITRKPIEADAEELEHNRRARSAKLR 302

Query: 313 AGMRT 317
              + 
Sbjct: 303 VLEKV 307


>gi|309799924|ref|ZP_07694128.1| S-adenosyl-methyltransferase MraW [Streptococcus infantis SK1302]
 gi|308116451|gb|EFO53923.1| S-adenosyl-methyltransferase MraW [Streptococcus infantis SK1302]
          Length = 316

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 105/319 (32%), Positives = 172/319 (53%), Gaps = 15/319 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M+   H     HV V+L + I +L+  P  + +DAT G  G+S           ++ A D
Sbjct: 1   MTKEFH-----HVTVMLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFD 55

Query: 66  RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120
           +D  A+   Q+ +  Y E+   +  +  F  LQ  + + GV   DG+ +DLGVSS Q+D 
Sbjct: 56  QDQNAIDNAQKRLAPYIEKGMVTFIKDNFRHLQLRLQEAGVEEIDGICYDLGVSSPQLDQ 115

Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS++K  PLDMRM+    ++A +VVN  +  DL RI    GE+K + +IA  I + 
Sbjct: 116 RERGFSYKKDAPLDMRMNQEASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQA 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R+  P +TT +L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A + 
Sbjct: 176 RELKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMEL 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L   G + V++FHSLEDRL K+ F   S   +        +      + +++K ++P++E
Sbjct: 236 LAVDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSKE 295

Query: 299 DVAFNRRSRSAKLRAGMRT 317
           ++  N RS SAKLR   + 
Sbjct: 296 ELEANNRSHSAKLRVARKI 314


>gi|315611782|ref|ZP_07886704.1| S-adenosyl-methyltransferase MraW [Streptococcus sanguinis ATCC
           49296]
 gi|315316197|gb|EFU64227.1| S-adenosyl-methyltransferase MraW [Streptococcus sanguinis ATCC
           49296]
          Length = 316

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 106/319 (33%), Positives = 170/319 (53%), Gaps = 15/319 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M+   H     HV VLL + I +L+  P  + +DAT G  G+S           ++ A D
Sbjct: 1   MTKEFH-----HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFD 55

Query: 66  RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120
           +D  A+   Q+ +  Y E+   +  +  F  LQ  + + GV   DG+ +DLGVSS Q+D 
Sbjct: 56  QDQNAIDNAQKRLAPYIEKGMVTFIKDNFRHLQARLQEAGVQEIDGICYDLGVSSPQLDQ 115

Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS++K  PLDMRM+    ++A +VVN  +  DL RI    GE+K + +IA  I + 
Sbjct: 116 RERGFSYKKDAPLDMRMNQEASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQA 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R+  P +TT +L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   
Sbjct: 176 REVKPIETTAELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDM 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L   G + V++FHSLEDRL K+ F   S   +        +      + +++K ++P+ E
Sbjct: 236 LALDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAE 295

Query: 299 DVAFNRRSRSAKLRAGMRT 317
           ++  N RS SAKLR   + 
Sbjct: 296 ELEANNRSHSAKLRVARKI 314


>gi|256003312|ref|ZP_05428303.1| S-adenosyl-methyltransferase MraW [Clostridium thermocellum DSM
           2360]
 gi|281417697|ref|ZP_06248717.1| S-adenosyl-methyltransferase MraW [Clostridium thermocellum JW20]
 gi|255992602|gb|EEU02693.1| S-adenosyl-methyltransferase MraW [Clostridium thermocellum DSM
           2360]
 gi|281409099|gb|EFB39357.1| S-adenosyl-methyltransferase MraW [Clostridium thermocellum JW20]
 gi|316940267|gb|ADU74301.1| S-adenosyl-methyltransferase MraW [Clostridium thermocellum DSM
           1313]
          Length = 313

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 112/309 (36%), Positives = 169/309 (54%), Gaps = 11/309 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H PVLLE+ I+ L   P  V +D T G  G+S    K       +I LD+D FA+   QE
Sbjct: 5   HKPVLLEETISNLAIKPDGVYIDGTVGGAGHSGEILKRLDESGTLIGLDQDEFAIKTSQE 64

Query: 77  TMR--DYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +   + K +  L    F  +++         VDG++ DLGVSS Q+D   RGFS+ K  
Sbjct: 65  KLAQINSKAKIILVNTNFVNIKEVCQKNNIESVDGILLDLGVSSHQLDEASRGFSYNKDA 124

Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM   G ++A  +VN+   +++ RI+   GEEK ASRIA  IV+ R+    +TT +
Sbjct: 125 PLDMRMDRRGELTAKKIVNEYGREEIKRIIRDYGEEKWASRIAEFIVEARKKKEIETTGE 184

Query: 191 LSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I+  +   ++    HPA R+FQALRI VNNE+  LA+ +    + LK GG   +++
Sbjct: 185 LVDIIKAAIPSSARRGGPHPAKRTFQALRIAVNNELGILAKTIEDGTELLKPGGRFCIIT 244

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK  F  +    +  +   + +         + +K +VP ++++  N R+RS
Sbjct: 245 FHSLEDRIVKDEFNKKVNPCICPKQFPVCTCGRKPEGVLVNRKPIVPKEKELEENPRARS 304

Query: 309 AKLRAGMRT 317
           AKLR   + 
Sbjct: 305 AKLRVLEKI 313


>gi|57650291|ref|YP_186055.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus COL]
 gi|151221301|ref|YP_001332123.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|68565417|sp|Q5HGQ2|RSMH_STAAC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262826643|sp|A6QG79|RSMH_STAAE RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|57284477|gb|AAW36571.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus COL]
 gi|150374101|dbj|BAF67361.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus str. Newman]
          Length = 311

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 100/308 (32%), Positives = 161/308 (52%), Gaps = 9/308 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H+ V+L + I  LN     V +D T G  G++            +IA+D+D  A+  
Sbjct: 1   MFHHISVMLNETIDYLNVKENGVYIDCTLGGAGHALYLLNQLNDDGRLIAIDQDQTAIDN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E ++D+  + +   + F +L   + D   + VDG+ +DLGVSS Q+D  +RGFS+   
Sbjct: 61  AKEVLKDHLHRVTFVHSNFRELTQILKDLNIEKVDGIYYDLGVSSPQLDIPERGFSYHHD 120

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM  +  ++A ++VN  + + L +I    GEEK + +IA  I   R+  P  TT 
Sbjct: 121 ATLDMRMDQTQELTAYEIVNNWSYEALVKIFYRYGEEKFSKQIARRIEAHREQQPITTTL 180

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I++ +    +    HPA R FQALRI VN+E+      +  A + +K  G + V+
Sbjct: 181 ELVDIIKEGIPAKARRKGGHPAKRVFQALRIAVNDELSAFEDSIEQAIELVKVDGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F          R   +   A+    + + +K +  T+ED+  N R+R
Sbjct: 241 TFHSLEDRLCKQVFQEYEKGPEVPRGLPVIPEAYTPKLKRVNRKPITATEEDLDDNNRAR 300

Query: 308 SAKLRAGM 315
           SAKLR   
Sbjct: 301 SAKLRVAE 308


>gi|310779075|ref|YP_003967408.1| S-adenosyl-methyltransferase MraW [Ilyobacter polytropus DSM 2926]
 gi|309748398|gb|ADO83060.1| S-adenosyl-methyltransferase MraW [Ilyobacter polytropus DSM 2926]
          Length = 314

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 108/305 (35%), Positives = 168/305 (55%), Gaps = 10/305 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H+PVL  + I  L    G V LD T G GG+S    K       +I++D+D  A+    E
Sbjct: 10  HIPVLYRETIENLVKNEGGVYLDCTLGGGGHSEGILKALSEKGKLISIDQDQQALDFAGE 69

Query: 77  TMRDYKEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  Y +++  ++  F  L   +       +DG++ D+GVSS Q+D  +RGFS++    L
Sbjct: 70  RLGKYGKKWESYKDNFENLDTVLYLAGYDKIDGILMDIGVSSTQLDDPERGFSYRFDTKL 129

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+ +  +SA +VVNQ     L++I+   GEE+ A +IA  I + R   P +TT DL 
Sbjct: 130 DMRMNKNAKVSAYEVVNQYEEGRLSKIIYDYGEERHARKIARLICEIRAEKPIETTGDLV 189

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I++          HPA ++FQA+RI VN E++ L + +  A  ALK GG L +++FHS
Sbjct: 190 EIIKRAYKGKSP--KHPAMKTFQAIRIEVNRELDVLERSIDKAINALKPGGRLAIITFHS 247

Query: 253 LEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK  F   S   +      +    + A  + IT+K + P  +++ FN+R+RS+KL
Sbjct: 248 LEDRMVKNKFKEMSVDCICPPELPVCRCDNKAKVKIITRKPITPKDDELKFNKRARSSKL 307

Query: 312 RAGMR 316
           R   R
Sbjct: 308 RVVER 312


>gi|322375922|ref|ZP_08050433.1| S-adenosyl-methyltransferase MraW [Streptococcus sp. C300]
 gi|321279190|gb|EFX56232.1| S-adenosyl-methyltransferase MraW [Streptococcus sp. C300]
          Length = 316

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 106/319 (33%), Positives = 169/319 (52%), Gaps = 15/319 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M+   H     HV VLL + I +L+  P    +DAT G  G+S           ++ A D
Sbjct: 1   MTKEFH-----HVTVLLHETIDMLDVKPDGTYVDATLGGAGHSEYLLSKLSEKGHLYAFD 55

Query: 66  RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120
           +D  A+   Q+ +  Y E+   +  +  F  LQ  + + GV   DG+ +DLGVSS Q+D 
Sbjct: 56  QDQNAIDNAQKRLAPYIEKGMVTFIKDNFRHLQARLQEAGVQEIDGICYDLGVSSPQLDQ 115

Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS++K  PLDMRM+    ++A +VVN  +  DL RI    GE+K + +IA  I + 
Sbjct: 116 RERGFSYKKDAPLDMRMNQEASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQA 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R+  P +TT +L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   
Sbjct: 176 REVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDM 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L   G + V++FHSLEDRL K+ F   S   +        +      + +++K ++P+ E
Sbjct: 236 LALDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAE 295

Query: 299 DVAFNRRSRSAKLRAGMRT 317
           ++  N RS SAKLR   + 
Sbjct: 296 ELEANNRSHSAKLRVARKI 314


>gi|306821091|ref|ZP_07454707.1| S-adenosyl-methyltransferase MraW [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304550784|gb|EFM38759.1| S-adenosyl-methyltransferase MraW [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 309

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 113/307 (36%), Positives = 162/307 (52%), Gaps = 9/307 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76
           +H  VLL + +  LN   G   +DATFG GG+S       +N  +   D+D  A+  G  
Sbjct: 4   NHKSVLLYETVDSLNVKEGNTYVDATFGGGGHSGYLLSKANNINLYVFDQDEEAIKNGMN 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                          F  ++  + ++ +   DG++ DLGVSS Q+D  +RGFS+    PL
Sbjct: 64  NFAG-NNNIHFINTNFVNIKSALYERKITKIDGLIADLGVSSYQLDNAERGFSYMNDAPL 122

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  +  ++A DVVN  + + L+ I+   GEE  A +IA  IV RR      TT +L 
Sbjct: 123 DMRMDKNSPLTAYDVVNNYSKEQLSDIIRRYGEENWADKIAQVIVDRRGQKSIDTTFELV 182

Query: 193 SLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+K +     ++  HPA R+FQA+RI VNNEI+ L + L  A + L +GG L V++FH
Sbjct: 183 DVIEKAIPKKLRDKNKHPAKRTFQAIRIEVNNEIKILEKFLCDAFELLSSGGRLSVITFH 242

Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR VK  F    G  +  +   I           ITKK +VP+ E++  N RSRSAK
Sbjct: 243 SLEDRAVKNIFKELVGGCICPKEFPICMCNRKEEATIITKKPIVPSDEELKNNPRSRSAK 302

Query: 311 LRAGMRT 317
           LR   + 
Sbjct: 303 LRVIEKI 309


>gi|312866364|ref|ZP_07726582.1| S-adenosyl-methyltransferase MraW [Streptococcus downei F0415]
 gi|311098058|gb|EFQ56284.1| S-adenosyl-methyltransferase MraW [Streptococcus downei F0415]
          Length = 316

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 108/321 (33%), Positives = 178/321 (55%), Gaps = 17/321 (5%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           M++  H     HV VLL + + +L P P  + +DAT G  G+S           ++   D
Sbjct: 1   MTNEFH-----HVSVLLHETVDMLAPKPDGIYVDATLGGAGHSAYLLSKLGPKGHLYCFD 55

Query: 66  RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120
           +D  A+   Q  ++DY ++   +  +  F  L+  + ++GV   DG+++DLGVSS Q+D 
Sbjct: 56  QDQSAIDNAQVKLKDYVDRGMVTFIKDNFRNLKADLAEEGVTQIDGILYDLGVSSPQLDQ 115

Query: 121 GDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS+++  PLDMRM+    +SA DVVN  + +DL +I    GE+K + +IA  I + 
Sbjct: 116 RERGFSYKQDAPLDMRMNQEADLSAYDVVNTYSYQDLVKIFFKYGEDKFSKQIARKIEQA 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R+S P +TT +L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A + 
Sbjct: 176 RKSKPIETTTELTEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQALEL 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297
           L   G + V++FHSLEDRL K+ F   S   V      IP    P +   + +K ++P+Q
Sbjct: 236 LALDGRISVITFHSLEDRLTKQIFKEASSVDVPKGLPFIPEEMQPKI-ALVNRKPILPSQ 294

Query: 298 EDVAFNRRSRSAKLRAGMRTV 318
            +++ N R+ SAKLR   +  
Sbjct: 295 GELSVNNRAHSAKLRVAKKIR 315


>gi|307708181|ref|ZP_07644648.1| S-adenosyl-methyltransferase MraW [Streptococcus mitis NCTC 12261]
 gi|307615627|gb|EFN94833.1| S-adenosyl-methyltransferase MraW [Streptococcus mitis NCTC 12261]
          Length = 316

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 106/319 (33%), Positives = 170/319 (53%), Gaps = 15/319 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M+   H     HV VLL + I +L+  P  + +DAT G  G+S           ++ A D
Sbjct: 1   MTKEFH-----HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFD 55

Query: 66  RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120
           +D  A+   Q+ +  Y E+   +  +  F  LQ  + + GV   DG+ +DLGVSS Q+D 
Sbjct: 56  QDQNAIDNAQKRLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQ 115

Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS++K  PLDMRM+    ++A +VVN  +  DL RI    GE+K + +IA  I + 
Sbjct: 116 RERGFSYKKDAPLDMRMNQEASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQA 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R+  P +TT +L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   
Sbjct: 176 REVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDM 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L   G + V++FHSLEDRL K+ F   S   +        +      + +++K ++P+ E
Sbjct: 236 LALDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAE 295

Query: 299 DVAFNRRSRSAKLRAGMRT 317
           ++  N RS SAKLR   + 
Sbjct: 296 ELEANNRSHSAKLRVARKI 314


>gi|289168599|ref|YP_003446868.1| S-adenosyl-methyltransferase mraW [Streptococcus mitis B6]
 gi|288908166|emb|CBJ23008.1| S-adenosyl-methyltransferase mraW [Streptococcus mitis B6]
          Length = 316

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 107/319 (33%), Positives = 171/319 (53%), Gaps = 15/319 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M+   H     HV VLL + I +L+  P  + +DAT G  G+S           ++ A D
Sbjct: 1   MTKEFH-----HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFD 55

Query: 66  RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120
           +D  A+   Q+ +  Y E+   +  +  F  LQ  + + GV   DG+ +DLGVSS Q+D 
Sbjct: 56  QDQNAIDNAQKRLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQ 115

Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS++K  PLDMRM+    ++A +VVN  +  DL RI    GE+K + +IA  I + 
Sbjct: 116 RERGFSYKKDAPLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQA 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R+  P +TT +L+ +I+      +  N+ HPA + FQA+RI VN+E+    + ++ A   
Sbjct: 176 REVKPIETTTELAEIIKSAKPAKELKNKGHPAKQIFQAIRIEVNDELGAADESIQQAMDM 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L   G + V++FHSLEDRL K+ F   S   +        +      + +++K ++P+ E
Sbjct: 236 LALDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAE 295

Query: 299 DVAFNRRSRSAKLRAGMRT 317
           ++  N RS SAKLR   + 
Sbjct: 296 ELEANNRSHSAKLRVARKI 314


>gi|114773347|ref|ZP_01450551.1| S-adenosyl-methyltransferase MraW [alpha proteobacterium HTCC2255]
 gi|114546281|gb|EAU49192.1| S-adenosyl-methyltransferase MraW [alpha proteobacterium HTCC2255]
          Length = 337

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 143/332 (43%), Positives = 204/332 (61%), Gaps = 8/332 (2%)

Query: 9   MSSAIHHTIG-DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDR 66
           MS A  +     H+PVLL  ++  + P    + +D TFGAGGYSR+    G++ + A+DR
Sbjct: 1   MSIAQSYPPSSPHIPVLLTPILDSVKPIS-GIWVDGTFGAGGYSRAILDAGADTLYAIDR 59

Query: 67  DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDR 123
           DP   +  ++  +DY  +  L   TFS L  +V + G   +DGVV D+GVSSMQ+D  +R
Sbjct: 60  DPEVFARAKKWAKDYDGRLKLIHGTFSDLDTHVKNAGTDLIDGVVLDIGVSSMQLDQAER 119

Query: 124 GFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           GFSF K GPLDMRM  SG+SA+D+VN    K L  ++ + GEE+ + RIA  IVK R++ 
Sbjct: 120 GFSFMKDGPLDMRMGQSGMSAADIVNSVEEKVLADLIYLYGEERASRRIARNIVKSRENL 179

Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
            F+TT  L  +I+ ++   K  + HPATR+FQALRI VN+E+ +L  GLR+AE  L+ GG
Sbjct: 180 KFETTFQLVKVIEASLPRPKPGQTHPATRTFQALRIAVNDELGQLVSGLRAAENILREGG 239

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHP-AVFQSITKKVVVPTQEDVAF 302
           LL VV+FHSLEDR+VK+F  +RSG         P   +  A F+ I +K +   ++++  
Sbjct: 240 LLAVVTFHSLEDRIVKRFIQARSGNNPRGNRYQPEKTNDIATFEKIGRKAIAANKDEINS 299

Query: 303 NRRSRSAKLRAGMRTVERSIEDDSF-VHLPRL 333
           N R+RSAKLR   R    S E  +F + LP+ 
Sbjct: 300 NPRARSAKLRLARRLNTTSGEFSAFDIGLPKF 331


>gi|327462427|gb|EGF08752.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus sanguinis SK1057]
          Length = 316

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 100/319 (31%), Positives = 170/319 (53%), Gaps = 15/319 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           M++  H     H+ VLL + +  L   P  + +DAT G  G+S           ++ A D
Sbjct: 1   MTNEFH-----HITVLLHETVDQLAVKPEGIYVDATLGGAGHSEYLLSQLGDEGHLYAFD 55

Query: 66  RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120
           +D  A+   ++ +  Y E+   +  +  F  L+  + + GV   DG+ +DLGVSS Q+D 
Sbjct: 56  QDQTAIDNAKKRLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQ 115

Query: 121 GDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS+++  PLDMRM+    ++A +VVN  + +DL RI    GE+K + +IA  I + 
Sbjct: 116 RERGFSYKQDAPLDMRMNRDAALTAFEVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQA 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R   P +TT +L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   
Sbjct: 176 RSVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDL 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L   G + V++FHSLEDRL K+ F   S   +        +      + +++K ++P++E
Sbjct: 236 LAVDGRIAVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKLELVSRKPILPSKE 295

Query: 299 DVAFNRRSRSAKLRAGMRT 317
           ++  N R+ SAKLR   + 
Sbjct: 296 ELESNNRAHSAKLRVARKI 314


>gi|307711383|ref|ZP_07647801.1| S-adenosyl-methyltransferase MraW [Streptococcus mitis SK321]
 gi|307616801|gb|EFN95983.1| S-adenosyl-methyltransferase MraW [Streptococcus mitis SK321]
          Length = 316

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 106/319 (33%), Positives = 171/319 (53%), Gaps = 15/319 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M+   H     HV VLL + I +L+  P  + +DAT G  G+S           ++ A D
Sbjct: 1   MTKEFH-----HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFD 55

Query: 66  RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120
           +D  A+   Q+ +  Y E+   +  +  F  LQ  + + GV   DG+ +DLGVSS Q+D 
Sbjct: 56  QDQNAIDNAQKRLAPYIEKGMVTFIKDNFRHLQTRLHEAGVQEIDGICYDLGVSSPQLDQ 115

Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS++K  PLDMRM+    ++A +VVN  +  DL RI    GE+K + +IA  I + 
Sbjct: 116 RERGFSYKKDAPLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQA 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R+  P +TT +L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A + 
Sbjct: 176 REVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMEM 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L   G + V++FHSLEDRL K+ F   S   +        +      + +++K ++P+ E
Sbjct: 236 LALDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAE 295

Query: 299 DVAFNRRSRSAKLRAGMRT 317
           ++  N RS SAKLR   + 
Sbjct: 296 ELEANNRSHSAKLRVARKI 314


>gi|306830125|ref|ZP_07463309.1| S-adenosyl-methyltransferase MraW [Streptococcus mitis ATCC 6249]
 gi|304427651|gb|EFM30747.1| S-adenosyl-methyltransferase MraW [Streptococcus mitis ATCC 6249]
          Length = 316

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 106/319 (33%), Positives = 170/319 (53%), Gaps = 15/319 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M+   H     HV VLL + I +L+  P  + +DAT G  G+S           ++ A D
Sbjct: 1   MTKEFH-----HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFD 55

Query: 66  RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120
           +D  A+   Q+ +  Y E+   +  +  F  LQ  + + GV   DG+ +DLGVSS Q+D 
Sbjct: 56  QDQNAIDNAQKRLAPYIEKGMVTFIKDNFRHLQARLLEAGVQEIDGICYDLGVSSPQLDQ 115

Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS++K  PLDMRM+    ++A +VVN  +  DL RI    GE+K + +IA  I + 
Sbjct: 116 RERGFSYKKDAPLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQA 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R+  P +TT +L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   
Sbjct: 176 REVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDM 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L   G + V++FHSLEDRL K+ F   S   +        +      + +++K ++P+ E
Sbjct: 236 LALDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAE 295

Query: 299 DVAFNRRSRSAKLRAGMRT 317
           ++  N RS SAKLR   + 
Sbjct: 296 ELEANNRSHSAKLRVARKI 314


>gi|322412440|gb|EFY03348.1| S-adenosyl-methyltransferase MraW [Streptococcus dysgalactiae
           subsp. dysgalactiae ATCC 27957]
          Length = 337

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 107/328 (32%), Positives = 176/328 (53%), Gaps = 15/328 (4%)

Query: 1   MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-- 58
           ++  + K M+   H     HV VLL + + +L+  P  + +DAT G  G+S         
Sbjct: 14  LKYGTIKVMTKEFH-----HVTVLLHETVDMLDIKPNGIYVDATLGGSGHSAYLLSKLSE 68

Query: 59  -SNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLG 112
             ++   D+D  A+   Q  ++ Y  K Q +  +  F  L+  +   GV   DG+++DLG
Sbjct: 69  QGHLYCFDQDQKAIDNAQLILKPYIDKGQVTFIKDNFRHLKARLEALGVTEIDGILYDLG 128

Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASR 171
           VSS Q+D  +RGFS++++ PLDMRM   + ++A DVVN     DL +I    GE+K + +
Sbjct: 129 VSSPQLDEKERGFSYKQNAPLDMRMDRQAPLTAYDVVNTYPFNDLVKIFFKYGEDKFSKQ 188

Query: 172 IAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQ 230
           IA  I + R   P +TT +L+ LI+      +   + HPA + FQA+RI VN+E+    +
Sbjct: 189 IARKIEQARAIKPIETTTELAELIKAAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADE 248

Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK 290
            ++ A + L   G + V++FHSLEDRL K+ F   S   +             +F+ +++
Sbjct: 249 SIQDAMELLALDGRISVITFHSLEDRLTKQLFKEVSTVDVPKGLPFIPEDMKPIFELVSR 308

Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMRTV 318
           K ++P+QE++A N R+ SAKLR   +  
Sbjct: 309 KPILPSQEELAANNRAHSAKLRVAKKIR 336


>gi|218289891|ref|ZP_03494081.1| S-adenosyl-methyltransferase MraW [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218240031|gb|EED07217.1| S-adenosyl-methyltransferase MraW [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 316

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 116/306 (37%), Positives = 186/306 (60%), Gaps = 9/306 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VLLE+ +  L P PG V +DAT G GG++    +    G  VIA D+D  A++  + 
Sbjct: 5   HETVLLEEAVEALRPRPGGVYVDATLGGGGHTARLLERSAPGGAVIAFDQDETAIAHAEP 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             R Y  + +L +A F+++++ +   GV   DGV+FDLGVSS Q D  +RGFS+   GPL
Sbjct: 65  LKRQYPGRLTLVKANFAEMEERLRALGVTAVDGVLFDLGVSSPQFDLPERGFSYWHEGPL 124

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     ++A ++VN+ + ++L RI+   GEE+ A+ IA AI + R   P +TT +L+
Sbjct: 125 DMRMDRHQPLTAREIVNEWDEQELARIIREYGEERFATAIARAIARARSKKPIETTTELA 184

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +++  +  + + +  HPA R+FQA+RI VN+E+  L +G+ +A +AL+ GG L V++FH
Sbjct: 185 EIVKSAIPAAARRSGPHPARRTFQAIRIAVNDELGALERGMEAAFRALRPGGRLSVITFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR VK+ F + +   +      +       + + +++K V P+ E++  N R+RSAK
Sbjct: 245 SLEDRAVKRLFQTWAQGCICPPEFPVCQCGRKPLGRMVSRKPVTPSSEELERNPRARSAK 304

Query: 311 LRAGMR 316
           LRA  +
Sbjct: 305 LRAFEK 310


>gi|223984258|ref|ZP_03634404.1| hypothetical protein HOLDEFILI_01698 [Holdemania filiformis DSM
           12042]
 gi|223963789|gb|EEF68155.1| hypothetical protein HOLDEFILI_01698 [Holdemania filiformis DSM
           12042]
          Length = 312

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 118/310 (38%), Positives = 179/310 (57%), Gaps = 9/310 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74
           +  H  VLL++ I  LN     + +D T G GG+S    +     ++ A D D  A++  
Sbjct: 1   MTRHYSVLLQESIDALNCQSDGIYVDGTLGRGGHSLEIARRLQNGHLYAFDLDEQALAES 60

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            + + +   + +L +A F+Q+++ +  +GV   DGVV DLGVSS Q D G+RGFS++   
Sbjct: 61  AQRLAEVSGRVTLIRANFAQMREELNARGVMSVDGVVMDLGVSSPQFDDGERGFSYRYDA 120

Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM  S   SA ++VN+ + K+L+ +L   GEE  +  IA  IV+ R   P  TT +
Sbjct: 121 RLDMRMDQSQPRSAWNLVNELDEKELSALLWKYGEESYSRPIARQIVRARTLHPIDTTFE 180

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I+K +     N + HPA ++FQALRI VN E+E L  GLR+A   +K GG + V++
Sbjct: 181 LVDVIKKALPAKVLNKKGHPAKQTFQALRIAVNGELESLETGLRAAMSLVKPGGRIAVIT 240

Query: 250 FHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           FHSLEDR+VK+ F   S   K      ++PS      F+ +++K ++P +E++A N RS 
Sbjct: 241 FHSLEDRIVKETFRQASSVEKTDPRIPLLPSQIRQPDFRLVSRKPILPGEEELAENNRSH 300

Query: 308 SAKLRAGMRT 317
           SAKLR   R 
Sbjct: 301 SAKLRVLERI 310


>gi|315194065|gb|EFU24458.1| S-adenosyl-methyltransferase [Staphylococcus aureus subsp. aureus
           CGS00]
          Length = 311

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 100/308 (32%), Positives = 161/308 (52%), Gaps = 9/308 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H+ V+L + I  LN     V +D T G  G++            +IA+D+D  A+  
Sbjct: 1   MFHHISVMLNETIDYLNIKENGVYIDCTLGGAGHALYLLNQLNDDGRLIAIDQDQTAIDN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E ++D+  + +   + F +L   + D   + VDG+ +DLGVSS Q+D  +RGFS+   
Sbjct: 61  AKEVLKDHLHKVTFVHSNFRELTQILKDLNIEKVDGIYYDLGVSSPQLDIPERGFSYHHD 120

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM  +  ++A ++VN  + + L +I    GEEK + +IA  I   R+  P  TT 
Sbjct: 121 ATLDMRMDQTQELTAYEIVNNWSYEALVKIFYRYGEEKFSKQIARRIEAHREQQPITTTL 180

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I++ +    +    HPA R FQALRI VN+E+      +  A + +K  G + V+
Sbjct: 181 ELVDIIKEGIPAKARRKGGHPAKRVFQALRIAVNDELSAFEDSIEQAIELVKVDGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F          R   +   A+    + + +K +  T+ED+  N R+R
Sbjct: 241 TFHSLEDRLCKQVFQEYEKGPEVPRGLPVIPEAYTPKLKRVNRKPITATEEDLDDNNRAR 300

Query: 308 SAKLRAGM 315
           SAKLR   
Sbjct: 301 SAKLRVAE 308


>gi|282851645|ref|ZP_06261010.1| S-adenosyl-methyltransferase MraW [Lactobacillus gasseri 224-1]
 gi|282557613|gb|EFB63210.1| S-adenosyl-methyltransferase MraW [Lactobacillus gasseri 224-1]
          Length = 315

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 109/311 (35%), Positives = 170/311 (54%), Gaps = 13/311 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76
            H  VLL + I  LNP    + +DATFG GG++R      +   VI  D+D +A+S  +E
Sbjct: 4   KHKSVLLHETIDNLNPKDDGLYVDATFGGGGHARYLLSKLNRGTVIGFDQDEYAISMAKE 63

Query: 77  TMRD-----YKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSF 127
           +  +      + +  L    F  L++ + +     G+DG+ +DLGVSS Q D  +RGFS+
Sbjct: 64  SFAEELKPGAEPRLILVHDNFCHLKENLVELGISDGIDGIYYDLGVSSPQFDQPERGFSY 123

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           +    LDMRM  S  + A  +VN  + K+L+ IL   G+EK + +IA  IV RR+  P  
Sbjct: 124 RFDARLDMRMDQSQELDAYTIVNTWSQKELSDILYKYGDEKFSRQIARKIVDRRREKPIV 183

Query: 187 TTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           TT DL  +I+  +   ++ +  HPA +SFQA+R+ VNNE+  L + L  A K LK GG +
Sbjct: 184 TTFDLVDVIKDAIPAYARRSGGHPAKKSFQAIRVAVNNELGVLQESLEEAIKLLKPGGRI 243

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
            V++F S ED++VKK F   S   +     +         + I++K ++ + +++  N R
Sbjct: 244 SVITFQSHEDKIVKKIFKKYSEVEIPRGMPMIPADSKPTLRLISRKPIMASSDELEENNR 303

Query: 306 SRSAKLRAGMR 316
           S SAKLR   +
Sbjct: 304 SHSAKLRVAEK 314


>gi|319939729|ref|ZP_08014086.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Streptococcus anginosus 1_2_62CV]
 gi|319811067|gb|EFW07378.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Streptococcus anginosus 1_2_62CV]
          Length = 316

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 106/319 (33%), Positives = 169/319 (52%), Gaps = 15/319 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           M++  H     HV VLL + I  L+  P  V +DAT G  G+S           ++ A D
Sbjct: 1   MTNEFH-----HVTVLLHETIDQLDIKPNGVYVDATLGGAGHSEYLLSKLGKNGHLYAFD 55

Query: 66  RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120
           +D  A+   Q+ +  Y EQ   +     F  L+  + + GV   DG+ +DLGVSS Q+D 
Sbjct: 56  QDQTAIEHAQKRLASYVEQGMVTFINDNFRHLKARLNELGVEEIDGICYDLGVSSPQLDE 115

Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS+++  PLDMRM+    ++A +VVNQ +  DL RI    GE+K + +IA  I + 
Sbjct: 116 RERGFSYKQDAPLDMRMNREAKLTAYEVVNQYSYHDLVRIFFKYGEDKFSKQIARKIEQM 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R+    +TT +L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   
Sbjct: 176 REKKLIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDL 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L   G + V++FHSLEDRL K+ F   S   +               + +T+K ++P++E
Sbjct: 236 LAVDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPENLQPKMKLVTRKPILPSKE 295

Query: 299 DVAFNRRSRSAKLRAGMRT 317
           ++  N R+ SAKLR   + 
Sbjct: 296 ELDNNNRAHSAKLRVAQKV 314


>gi|312863799|ref|ZP_07724037.1| S-adenosyl-methyltransferase MraW [Streptococcus vestibularis
           F0396]
 gi|311101335|gb|EFQ59540.1| S-adenosyl-methyltransferase MraW [Streptococcus vestibularis
           F0396]
          Length = 316

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 109/321 (33%), Positives = 172/321 (53%), Gaps = 17/321 (5%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M++  H     HV VLL + + +L+  P  + +DAT G  G+S           ++   D
Sbjct: 1   MTNEFH-----HVTVLLHETVDMLDIKPDGIYVDATLGGAGHSSYLLSQLSEKGHLYCFD 55

Query: 66  RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120
           +D  A+   Q  ++DY ++   +  +  F  L+  +   GV   DG+++DLGVSS Q+D 
Sbjct: 56  QDQKAIDNAQVRLKDYIDKGMVTFIKDNFRNLRSNLEALGVFEIDGILYDLGVSSPQLDE 115

Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS+++   LDMRM+    ++A DVVN     DL RI    GE+K + +IA  I + 
Sbjct: 116 RERGFSYKQDAKLDMRMNEEASLTAYDVVNTYPYNDLVRIFFKYGEDKFSKQIARKIEQA 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           RQ  P +TT +L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   
Sbjct: 176 RQVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQEALDL 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297
           L   G + V++FHSLEDRL K+ F   S   V      IP +  P V   + +K ++P+Q
Sbjct: 236 LAVDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPEDLQPKV-ALVNRKPILPSQ 294

Query: 298 EDVAFNRRSRSAKLRAGMRTV 318
           E++  N RS SAKLR   +  
Sbjct: 295 EELEANNRSHSAKLRVAKKIR 315


>gi|194468375|ref|ZP_03074361.1| S-adenosyl-methyltransferase MraW [Lactobacillus reuteri 100-23]
 gi|194453228|gb|EDX42126.1| S-adenosyl-methyltransferase MraW [Lactobacillus reuteri 100-23]
          Length = 318

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 118/313 (37%), Positives = 180/313 (57%), Gaps = 13/313 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76
            HV VLL++ +A LN  P    +DAT G GG++++  +     ++ + D+D  A+   +E
Sbjct: 5   KHVTVLLKEAVAGLNVQPTGTYVDATLGGGGHTQAILQQLVDGHLYSFDQDQTAIDYNKE 64

Query: 77  TMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            ++   EQ   +L +  F  ++  +    V   +G+++DLGVSS Q D   RGFS+Q   
Sbjct: 65  HLKTAIEQQKLTLVEDNFRNIKTELNSYNVKRVNGILYDLGVSSPQFDDAKRGFSYQHDA 124

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+    +SA +VVN+   + L +IL   GEEK A  IA  I +RR+ AP +TT +
Sbjct: 125 PLDMRMNQEQKLSAMEVVNEWPYERLVKILYRYGEEKFAKSIARKIEQRRKIAPIKTTFE 184

Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I++ +  + + +  HPA +SFQA+RI VN+E+  L + L  A   L  GG + V++
Sbjct: 185 LVDVIKEGIPAAARRHGGHPAKKSFQAIRIAVNDELGALEESLEQALDLLDVGGRISVIT 244

Query: 250 FHSLEDRLVKKFFASR---SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           F SLEDRLVK  F  +   SG V     +IP+   P  F+ I KK +V + E++A N R+
Sbjct: 245 FQSLEDRLVKTMFREKTSLSGDVPQGLPVIPAGMEP-DFKLINKKPIVASDEELAANHRA 303

Query: 307 RSAKLRAGMRTVE 319
            SAKLR   +  E
Sbjct: 304 HSAKLRIIEKIRE 316


>gi|114763021|ref|ZP_01442451.1| S-adenosyl-methyltransferase MraW [Pelagibaca bermudensis HTCC2601]
 gi|114544345|gb|EAU47353.1| S-adenosyl-methyltransferase MraW [Roseovarius sp. HTCC2601]
          Length = 330

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 147/329 (44%), Positives = 204/329 (62%), Gaps = 7/329 (2%)

Query: 9   MSSAIHHTIG-DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDR 66
           M+ A     G  HVPVLL  ++  + P      +D TFGAGGY+R   + G++ VI +DR
Sbjct: 1   MAPAADQDNGAPHVPVLLRPLLKAVAPVS-GTWVDGTFGAGGYARGLLEAGADKVIGIDR 59

Query: 67  DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126
           DP A    Q  + DY ++  L +  F+ +   +   G DGVV DLGVSSMQ+D  +RGFS
Sbjct: 60  DPLAHQMAQAWIGDYGDRLELVEGNFADMDKVI--SGADGVVLDLGVSSMQLDIAERGFS 117

Query: 127 FQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           F K GPLDMRM  SG SA+D+V + +   L  +L   GEE+ + RIA AIVK R   P +
Sbjct: 118 FMKDGPLDMRMEQSGESAADLVKRLDETALADVLYTYGEERASRRIARAIVKARDQEPIE 177

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           TT  LSS+++  +   K  + HPATRSFQALRI VN+E   L +GL +AE+ALK GG L 
Sbjct: 178 TTARLSSIVEACLPRPKPGQSHPATRSFQALRIAVNDEYGALWRGLMAAERALKPGGWLC 237

Query: 247 VVSFHSLEDRLVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           VV+FHS+EDR+VK+FF +R+G++    RH   +      F+ +T+K V P  E++A N R
Sbjct: 238 VVTFHSVEDRMVKRFFQARTGRLDTVSRHAPVTETEAPRFELLTRKAVGPDDEELAANPR 297

Query: 306 SRSAKLRAGMRTVERSIEDDS-FVHLPRL 333
           +RSA+LR G RT     E  +  +++P+L
Sbjct: 298 ARSARLRIGKRTDAAPGEIGADKLNMPQL 326


>gi|228477291|ref|ZP_04061929.1| S-adenosyl-methyltransferase MraW [Streptococcus salivarius SK126]
 gi|228251310|gb|EEK10481.1| S-adenosyl-methyltransferase MraW [Streptococcus salivarius SK126]
          Length = 316

 Score =  377 bits (970), Expect = e-103,   Method: Composition-based stats.
 Identities = 110/321 (34%), Positives = 171/321 (53%), Gaps = 17/321 (5%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M++  H     HV VLL + + +L+  P  + +DAT G  G+S           ++   D
Sbjct: 1   MTNEFH-----HVTVLLHETVDMLDIKPDGIYVDATLGGAGHSSYLLSQLSEKGHLYCFD 55

Query: 66  RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120
           +D  A+   Q  ++DY ++   +  +  F  L+  +   GV   DG+++DLGVSS Q+D 
Sbjct: 56  QDQKAIDNAQVRLKDYIDKGMVTFIKDNFRNLKSNLEALGVSEIDGILYDLGVSSPQLDE 115

Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            DRGFS+++   LDMRM+    ++A DVVN     DL RI    GE+K + +IA  I + 
Sbjct: 116 RDRGFSYKQDAKLDMRMNEEASLTAYDVVNTYPYNDLVRIFFKYGEDKFSKQIARKIEQA 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           RQ  P +TT +L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   
Sbjct: 176 RQVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQEALDL 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297
           L   G + V++FHSLEDRL K+ F   S   V      IP    P V   + +K ++P+Q
Sbjct: 236 LAVDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPEELQPKV-ALVNRKPILPSQ 294

Query: 298 EDVAFNRRSRSAKLRAGMRTV 318
           E++  N RS SAKLR   +  
Sbjct: 295 EELEANNRSHSAKLRVAKKIR 315


>gi|327467238|gb|EGF12742.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus sanguinis SK330]
          Length = 316

 Score =  377 bits (970), Expect = e-103,   Method: Composition-based stats.
 Identities = 100/319 (31%), Positives = 170/319 (53%), Gaps = 15/319 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           M++  H     H+ VLL + +  L   P  + +DAT G  G+S           ++ A D
Sbjct: 1   MTNEFH-----HITVLLHETVDQLAVKPDGIYVDATLGGAGHSEYLLSQLGDEGHLYAFD 55

Query: 66  RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120
           +D  A+   ++ +  Y E+   +  +  F  L+  + + GV   DG+ +DLGVSS Q+D 
Sbjct: 56  QDQTAIDNAKKRLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQ 115

Query: 121 GDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS+++  PLDMRM+    ++A +VVN  + +DL RI    GE+K + +IA  I + 
Sbjct: 116 RERGFSYKQDAPLDMRMNREAALTAFEVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQA 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R   P +TT +L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   
Sbjct: 176 RSVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQRAIDL 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L   G + V++FHSLEDRL K+ F   S   +        +      + +++K ++P++E
Sbjct: 236 LAVDGRIAVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKLELVSRKPILPSKE 295

Query: 299 DVAFNRRSRSAKLRAGMRT 317
           ++  N R+ SAKLR   + 
Sbjct: 296 ELESNNRAHSAKLRVARKI 314


>gi|225858187|ref|YP_002739697.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae 70585]
 gi|298254744|ref|ZP_06978330.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae str.
           Canada MDR_19A]
 gi|298502138|ref|YP_003724078.1| S-adenosyl-methyltransferase [Streptococcus pneumoniae TCH8431/19A]
 gi|262826820|sp|C1CBB2|RSMH_STRP7 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|225720978|gb|ACO16832.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae 70585]
 gi|298237733|gb|ADI68864.1| S-adenosyl-methyltransferase [Streptococcus pneumoniae TCH8431/19A]
          Length = 316

 Score =  377 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 106/319 (33%), Positives = 170/319 (53%), Gaps = 15/319 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M+   H     HV VLL + I +L+  P  + +DAT G  G+S           ++ A D
Sbjct: 1   MTKEFH-----HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFD 55

Query: 66  RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120
           +D  A+   Q+ +  Y E+   +  +  F  LQ  + + GV   DG+ +DLGVSS Q+D 
Sbjct: 56  QDQNAIDNAQKRLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQ 115

Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS++K  PLDMRM+    ++A +VVN  +  DL RI    GE+K + +IA  I + 
Sbjct: 116 RERGFSYKKDAPLDMRMNQDASLTAYEVVNNYDYHDLVRIFFKYGEDKFSKQIARKIEQA 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R+  P +TT +L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   
Sbjct: 176 REVKPIETTTELAEIIKLVKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDM 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L   G + V++FHSLEDRL K+ F   S   +        +      + +++K ++P+ E
Sbjct: 236 LALDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAE 295

Query: 299 DVAFNRRSRSAKLRAGMRT 317
           ++  N RS SAKLR   + 
Sbjct: 296 ELEANNRSHSAKLRVARKI 314


>gi|322377105|ref|ZP_08051597.1| S-adenosyl-methyltransferase MraW [Streptococcus sp. M334]
 gi|321281818|gb|EFX58826.1| S-adenosyl-methyltransferase MraW [Streptococcus sp. M334]
          Length = 316

 Score =  377 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 106/319 (33%), Positives = 170/319 (53%), Gaps = 15/319 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M+   H     HV VLL + I +L   P  + +DAT G  G+S           ++ A D
Sbjct: 1   MTKEFH-----HVTVLLHETIDMLEVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFD 55

Query: 66  RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120
           +D  A+   Q+ +  Y E+   +  +  F  LQ  + + GV   DG+ +DLGVSS Q+D 
Sbjct: 56  QDQNAIDNAQQRLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQ 115

Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS++K  PLDMRM+    ++A +VVN  +  DL RI    GE+K + +IA  I + 
Sbjct: 116 RERGFSYKKDAPLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQA 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R+  P +TT +L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A + 
Sbjct: 176 REVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMEM 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L   G + V++FHSLEDRL K+ F   S   +        +      + +++K ++P+ E
Sbjct: 236 LALDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAE 295

Query: 299 DVAFNRRSRSAKLRAGMRT 317
           ++  N RS SAKLR   + 
Sbjct: 296 ELEANNRSHSAKLRVARKI 314


>gi|257468236|ref|ZP_05632332.1| methyltransferase [Fusobacterium ulcerans ATCC 49185]
 gi|317062518|ref|ZP_07927003.1| S-adenosyl-methyltransferase mraW [Fusobacterium ulcerans ATCC
           49185]
 gi|313688194|gb|EFS25029.1| S-adenosyl-methyltransferase mraW [Fusobacterium ulcerans ATCC
           49185]
          Length = 313

 Score =  377 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 107/306 (34%), Positives = 168/306 (54%), Gaps = 10/306 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H+PVL  + I  L      + LD T G GG+S    K       +I++D+D  A+   ++
Sbjct: 9   HIPVLYRESIDNLVINKDGIYLDCTLGGGGHSEGILKELSEKGRLISIDQDQQAIDFAKK 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  Y  ++ +F+  F  L   +   G   +DG++ D+GVSS Q+D  +RGFS++    L
Sbjct: 69  RLEKYGNKWQVFKNNFENLDTVIYMAGYDKIDGILMDIGVSSTQLDDPERGFSYRYDTKL 128

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+ +  +SA +VVN+ + + L +IL   GEE+ + RIA  I + R+    +TT +L 
Sbjct: 129 DMRMNQNNPLSAYEVVNEYSEEALMKILFEYGEERNSRRIAKFICEAREIKKIETTGELV 188

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           ++I++     +    HPA ++FQA+RI VN E+E L + +  A  +LK GG L +++FHS
Sbjct: 189 AIIKRAYP--ERAAKHPAKKTFQAIRIEVNRELEVLEKAIDKAVDSLKVGGRLGIITFHS 246

Query: 253 LEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDRLVK  F   +          I      A  + ITKK ++P   +V FN R+ S+KL
Sbjct: 247 LEDRLVKTKFKDLATACKCPPGLPICVCGGKAKVKLITKKPIIPEGNEVEFNNRAHSSKL 306

Query: 312 RAGMRT 317
           R   R 
Sbjct: 307 RVVERI 312


>gi|322516106|ref|ZP_08069041.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus vestibularis ATCC 49124]
 gi|322125401|gb|EFX96751.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus vestibularis ATCC 49124]
          Length = 316

 Score =  377 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 108/321 (33%), Positives = 172/321 (53%), Gaps = 17/321 (5%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M++  H     HV VLL + + +L+  P  + +DAT G  G+S           ++   D
Sbjct: 1   MTNEFH-----HVTVLLHETVDMLDIKPDGIYVDATLGGAGHSSYLLSQLSEKGHLYCFD 55

Query: 66  RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120
           +D  A+   Q  ++DY ++   +  +  F  L+  +   GV   DG+++DLGVSS Q+D 
Sbjct: 56  QDQKAIDNAQVRLKDYIDKGMVTFIKDNFRNLRSNLEALGVSEIDGILYDLGVSSPQLDE 115

Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS+++   LDMRM+    ++A +VVN     DL RI    GE+K + +IA  I + 
Sbjct: 116 RERGFSYKQDAKLDMRMNEEASLTAYEVVNTYPYNDLVRIFFKYGEDKFSKQIARKIEQA 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           RQ  P +TT +L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   
Sbjct: 176 RQVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQEALDL 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297
           L   G + V++FHSLEDRL K+ F   S   V      IP +  P V   + +K ++P+Q
Sbjct: 236 LAVDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPEDLQPKV-ALVNRKPILPSQ 294

Query: 298 EDVAFNRRSRSAKLRAGMRTV 318
           E++  N RS SAKLR   +  
Sbjct: 295 EELEANNRSHSAKLRVAKKIR 315


>gi|322373647|ref|ZP_08048183.1| S-adenosyl-methyltransferase MraW [Streptococcus sp. C150]
 gi|321278689|gb|EFX55758.1| S-adenosyl-methyltransferase MraW [Streptococcus sp. C150]
          Length = 316

 Score =  377 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 108/321 (33%), Positives = 172/321 (53%), Gaps = 17/321 (5%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M++  H     HV VLL + + +L+  P  + +DAT G  G+S           ++   D
Sbjct: 1   MTNEFH-----HVTVLLHETVDMLDIKPDGIYVDATLGGAGHSSYLLSQLSEKGHLYCFD 55

Query: 66  RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120
           +D  A+   Q  ++DY ++   +  +  F  L+  +   GV   DG+++DLGVSS Q+D 
Sbjct: 56  QDQKAIDNAQGRLKDYIDKGMVTFIKDNFRNLRSNLEALGVSEIDGILYDLGVSSPQLDE 115

Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS+++   LDMRM+    ++A +VVN     DL RI    GE+K + +IA  I + 
Sbjct: 116 RERGFSYKQDAKLDMRMNEEASLTAYEVVNTYPYNDLVRIFFKYGEDKFSKQIARKIEQA 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           RQ  P +TT +L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   
Sbjct: 176 RQVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQEALDL 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297
           L   G + V++FHSLEDRL K+ F   S   V      IP +  P V   + +K ++P+Q
Sbjct: 236 LAVDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPEDLQPKV-ALVNRKPILPSQ 294

Query: 298 EDVAFNRRSRSAKLRAGMRTV 318
           E++  N RS SAKLR   +  
Sbjct: 295 EELEANNRSHSAKLRVAKKIR 315


>gi|139437204|ref|ZP_01771364.1| Hypothetical protein COLAER_00343 [Collinsella aerofaciens ATCC
           25986]
 gi|133776851|gb|EBA40671.1| Hypothetical protein COLAER_00343 [Collinsella aerofaciens ATCC
           25986]
          Length = 321

 Score =  377 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 113/320 (35%), Positives = 170/320 (53%), Gaps = 12/320 (3%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALD 65
           M   I      H PV+L +V+  L    G V+ D T G  G+S            ++ +D
Sbjct: 1   MERGILTQEYRHEPVMLGEVLESLRLKSGSVVCDCTLGGAGHSVKMAAQVGETGLLLGVD 60

Query: 66  RDPFAVSCGQETMRDYKEQF--SLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDC 120
           +D  A+      +          L +  F  L + +      GVDG +FDLGVSS Q+D 
Sbjct: 61  QDDMALEAAGARLDREVPGVPHQLLKGNFGDLDELLCSAEVPGVDGFLFDLGVSSPQLDI 120

Query: 121 GDRGFSFQKSGPLDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178
             RGFS+ +  PLDMRM    + ++A++V+N  N  DL RIL + GEEK AS+IA  IV+
Sbjct: 121 PGRGFSYNEDAPLDMRMDPGNNTLNAAEVINTYNEHDLARILRVYGEEKFASQIAREIVR 180

Query: 179 RRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
           RR+  P +TT     +I+  +  + + +  HPA +SFQA+RI VN+E++ L +GL +A +
Sbjct: 181 RREQEPIETTGQFVEIIKAGIPAAARRHGGHPAKKSFQAIRIEVNHELDVLERGLDAATR 240

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPT 296
            L  GG + V+S+HSLEDR+VK  F   S          +    +  + + IT+K +V  
Sbjct: 241 WLNPGGRICVISYHSLEDRIVKNHFKEMSQGCTCPPEIPVCVCGNVPILKVITRKPLVAQ 300

Query: 297 QEDVAFNRRSRSAKLRAGMR 316
            ++V  N R+RSAK+R   R
Sbjct: 301 PDEVERNPRARSAKIRVAQR 320


>gi|299821551|ref|ZP_07053439.1| S-adenosyl-methyltransferase [Listeria grayi DSM 20601]
 gi|299817216|gb|EFI84452.1| S-adenosyl-methyltransferase [Listeria grayi DSM 20601]
          Length = 313

 Score =  377 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 104/308 (33%), Positives = 173/308 (56%), Gaps = 11/308 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            H  VLL + + +L+  P  + +DAT G  G+S           ++ A D+D  A+   +
Sbjct: 6   KHDTVLLHETVDMLDIKPDGIYVDATLGGAGHSEYLLSKLNKKGHLYAFDQDQTAIDHAK 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E +  Y    +  ++ F  +++ + + GV   DG+++DLGVSS Q+D  +RGFS+ +   
Sbjct: 66  ERLAPYTGSVTFVKSNFRFMKEALAEHGVTEVDGILYDLGVSSPQLDVRERGFSYHQDAE 125

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM     ++A +VVN+   +DL RI    GEEK + +IA  I +RR     +TT +L
Sbjct: 126 LDMRMDQEQSLTAKEVVNEWRYEDLVRIFFQYGEEKFSKQIAREIERRRSEKTIETTGEL 185

Query: 192 SSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+  +   ++    HP  R FQA+RI VN+E++ +++ L  A   LK  G + V++F
Sbjct: 186 VDIIKTAIPAPARRKGGHPGKRVFQAIRIAVNDELDAVSESLEKALLLLKTNGRISVITF 245

Query: 251 HSLEDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+ K+ F  ++      R   +IP    P  F+ +T+K ++P++ ++A N R+RS
Sbjct: 246 HSLEDRITKQLFKQKTTAQETPRGLPVIPDEYQP-DFELVTRKPILPSEAEMATNNRARS 304

Query: 309 AKLRAGMR 316
           AKLR   +
Sbjct: 305 AKLRVIAK 312


>gi|331002506|ref|ZP_08326024.1| ribosomal RNA small subunit methyltransferase H 2 [Lachnospiraceae
           oral taxon 107 str. F0167]
 gi|330410322|gb|EGG89756.1| ribosomal RNA small subunit methyltransferase H 2 [Lachnospiraceae
           oral taxon 107 str. F0167]
          Length = 311

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 100/308 (32%), Positives = 169/308 (54%), Gaps = 8/308 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74
             +H  VLL++VI  LN       +D T G GG++    K      +I +D+D  A++  
Sbjct: 2   TFNHKSVLLDEVIESLNIKADGYYVDGTLGGGGHALEVVKRLKTGKLIGIDQDMDAINAA 61

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            + + DY +   + +  +  +++ +  +    VDG+  DLGVSS Q+D  +RGF+++   
Sbjct: 62  TQRLIDYSKSVIIIRDNYVNIENILKKENIEKVDGIYIDLGVSSYQLDNAERGFTYRFDA 121

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM   + + ASD+VN+ +  +L  I+   GE++ A  IA  IV+ R     +TT +
Sbjct: 122 PLDMRMDDRNELKASDIVNEYSESELFHIIRDYGEDRFAKNIAKHIVEYRNKKRIETTFE 181

Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I+ ++    +    HPA R+FQA+RI +N E+E L   +      LK GG L V++
Sbjct: 182 LVDIIKASIPMKIQVTGGHPAKRTFQAIRIELNKELEVLTDSINVMIDLLKPGGRLSVIT 241

Query: 250 FHSLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK+ F       +   +  +    + +  + IT+K ++P +E++  N R++S
Sbjct: 242 FHSLEDRIVKQAFKKAESPCVCPKKFPVCVCGNKSKGRVITRKAILPGEEELEENSRAKS 301

Query: 309 AKLRAGMR 316
           AKLR   +
Sbjct: 302 AKLRVFEK 309


>gi|169832477|ref|YP_001693854.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           Hungary19A-6]
 gi|262826832|sp|B1I953|RSMH_STRPI RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|168994979|gb|ACA35591.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           Hungary19A-6]
          Length = 316

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 105/319 (32%), Positives = 170/319 (53%), Gaps = 15/319 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M+   H     HV VLL + I +L+  P  + +DAT G  G+S           ++ A D
Sbjct: 1   MTKEFH-----HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFD 55

Query: 66  RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120
           +D  A+   Q+ +  Y E+   +  +  F  LQ  + + GV   DG+ +DLGVSS Q+D 
Sbjct: 56  QDQNAIDNAQKRLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQ 115

Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS++K  PLDMRM+    ++A +VVN  +  DL RI    GE+K + +IA  I + 
Sbjct: 116 RERGFSYKKDAPLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQE 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R+  P +TT +L+ +I+      +   + HPA + FQ++RI VN+E+    + ++ A   
Sbjct: 176 REVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQSIRIEVNDELGAADESIQQAMDM 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L   G + V++FHSLEDRL K+ F   S   +        +      + +++K ++P+ E
Sbjct: 236 LALDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAE 295

Query: 299 DVAFNRRSRSAKLRAGMRT 317
           ++  N RS SAKLR   + 
Sbjct: 296 ELEANNRSHSAKLRVARKI 314


>gi|332203501|gb|EGJ17568.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           GA47368]
          Length = 316

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 107/319 (33%), Positives = 170/319 (53%), Gaps = 15/319 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M+   H     HV VLL + I +L+  P  + +DAT G  G+S           ++ A D
Sbjct: 1   MTKEFH-----HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFD 55

Query: 66  RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120
           +D  A+   QE +  Y E+   +  +  F  LQ  + + GV   DG+ +DLGVSS Q+D 
Sbjct: 56  QDQNAIDNAQERLALYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQ 115

Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS++K  PLDMRM+    ++A +VVN  +  DL RI    GE+K + +IA  I + 
Sbjct: 116 RERGFSYKKDAPLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQA 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R+  P +TT +L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   
Sbjct: 176 REVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDM 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L   G + V++FHSLEDRL K+ F   S   +        +      + +++K ++P+ E
Sbjct: 236 LALDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAE 295

Query: 299 DVAFNRRSRSAKLRAGMRT 317
           ++  N RS SAKLR   + 
Sbjct: 296 ELEANNRSHSAKLRVARKI 314


>gi|225860373|ref|YP_002741882.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|303255210|ref|ZP_07341284.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae BS455]
 gi|262825688|sp|C1CPL0|RSMH_STRZT RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|225727237|gb|ACO23088.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|302597843|gb|EFL64915.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae BS455]
          Length = 316

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 106/319 (33%), Positives = 169/319 (52%), Gaps = 15/319 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M+   H     HV VLL + I +L+  P  + +DAT G  G+S           ++ A D
Sbjct: 1   MTKEFH-----HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFD 55

Query: 66  RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120
           +D  A+   Q+ +  Y E+   +  +  F  LQ  + + GV   DG+ +DLGVSS Q+D 
Sbjct: 56  QDQNAIDNAQKRLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQ 115

Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS++K  PLDMRM+    ++A +VVN  +  DL RI    GE+K + +IA  I + 
Sbjct: 116 RERGFSYKKDAPLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQA 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R+  P +TT +L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   
Sbjct: 176 REVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDM 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L   G + V++FHSLEDRL K+ F   S   +        +      + + +K ++P+ E
Sbjct: 236 LALDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVARKPILPSAE 295

Query: 299 DVAFNRRSRSAKLRAGMRT 317
           ++  N RS SAKLR   + 
Sbjct: 296 ELEANNRSHSAKLRVARKI 314


>gi|325695197|gb|EGD37098.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus sanguinis SK150]
          Length = 316

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 102/319 (31%), Positives = 169/319 (52%), Gaps = 15/319 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           M++  H     H+ VLL + +  L   P  + +DAT G  G+S           ++ A D
Sbjct: 1   MTNEFH-----HITVLLHETVDQLAVKPDGIYVDATLGGAGHSEYLLSQLGDEGHLYAFD 55

Query: 66  RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120
           +D  A+   ++ +  Y E+   +  +  F  L+  + + GV   DG+ +DLGVSS Q+D 
Sbjct: 56  QDQTAIDNAKKRLAPYVERGMVTFIKDNFRHLKSRLQEAGVEEIDGICYDLGVSSPQLDQ 115

Query: 121 GDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS+++  PLDMRM+    ++A DVVN  + +DL RI    GE+K + +IA  I + 
Sbjct: 116 RERGFSYKQDAPLDMRMNREAALTAFDVVNHYSYQDLVRIFFKYGEDKFSKQIARKIEQA 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R     +TT +L+ +I+      +   + HPA + FQA+RI VNNE+    + ++ A   
Sbjct: 176 RSIKLIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNNELGAADESIQQAIDL 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L   G + V++FHSLEDRL K+ F   S   +        +      + +++K ++P+QE
Sbjct: 236 LAVDGRIAVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPDELQPKLELVSRKPILPSQE 295

Query: 299 DVAFNRRSRSAKLRAGMRT 317
           ++  N R+ SAKLR   + 
Sbjct: 296 ELESNNRAHSAKLRVARKI 314


>gi|229827494|ref|ZP_04453563.1| hypothetical protein GCWU000182_02883 [Abiotrophia defectiva ATCC
           49176]
 gi|229788432|gb|EEP24546.1| hypothetical protein GCWU000182_02883 [Abiotrophia defectiva ATCC
           49176]
          Length = 322

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 102/322 (31%), Positives = 173/322 (53%), Gaps = 12/322 (3%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65
           MS  I      H+P++LE+VI  L+  P  + +D T G GG+S    K    G  +I +D
Sbjct: 3   MSENIE---FKHIPIMLEEVIEGLDIKPNGIYVDGTLGGGGHSYEIAKRLVSGGRLIGID 59

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGD 122
           +D  A+      + ++ ++  + ++ ++Q+   +   G   VDG++ DLGVSS Q+D  +
Sbjct: 60  QDEAAIKAAGARLSEFGDRVIIVRSNYAQMVSVLQSLGIEQVDGILLDLGVSSHQLDNAE 119

Query: 123 RGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFS+ +   LDMRM      +A D+VN  +  +LTRI+   GE++ A++I   I+  R+
Sbjct: 120 RGFSYMEDALLDMRMDRRQEKTARDIVNYYSQAELTRIIRDYGEDRFAAKIVAKIIDFRE 179

Query: 182 SAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           + P +TT +L+ +I+  +    +    HPA R+FQA+RI +N E+  L + +      L 
Sbjct: 180 NKPVETTGELAEIIKSAIPVKYRLTGGHPAKRTFQAIRIELNRELGVLEESIEGMLDILS 239

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQED 299
            GG + V++FHSLEDR+VK  F              I      +     ++K ++P+ E+
Sbjct: 240 DGGRMAVIAFHSLEDRIVKSAFKKAESPCTCPPDFPICVCGKKSKGFVASRKPLIPSDEE 299

Query: 300 VAFNRRSRSAKLRAGMRTVERS 321
              N R++S+KLR  +R  E +
Sbjct: 300 TERNPRAKSSKLRIFVRKREEN 321


>gi|306824545|ref|ZP_07457891.1| S-adenosyl-methyltransferase MraW [Streptococcus sp. oral taxon 071
           str. 73H25AP]
 gi|304433332|gb|EFM36302.1| S-adenosyl-methyltransferase MraW [Streptococcus sp. oral taxon 071
           str. 73H25AP]
          Length = 316

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 106/319 (33%), Positives = 170/319 (53%), Gaps = 15/319 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M+   H     HV VLL + I +L+  P  + +DAT G  G+S           ++ A D
Sbjct: 1   MTKEFH-----HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFD 55

Query: 66  RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120
           +D  A+   Q+ +  Y E+   +  +  F  LQ  + + GV   DG+ +DLGVSS Q+D 
Sbjct: 56  QDQNAIDNAQKRLAPYIEKGMVTFIKDNFRHLQARLQEAGVQEIDGICYDLGVSSPQLDQ 115

Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS++K  PLDMRM+    ++A +VVN  +  DL RI    GE+K + +IA  I + 
Sbjct: 116 RERGFSYKKDAPLDMRMNQEASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQA 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R+  P +TT +L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   
Sbjct: 176 REVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDM 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L   G + V++FHSLEDRL K+ F   S   +        +      + +++K ++P+ E
Sbjct: 236 LALDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAE 295

Query: 299 DVAFNRRSRSAKLRAGMRT 317
           ++  N RS SAKLR   + 
Sbjct: 296 ELVANNRSHSAKLRVARKI 314


>gi|148988090|ref|ZP_01819553.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           SP6-BS73]
 gi|168494684|ref|ZP_02718827.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           CDC3059-06]
 gi|147926554|gb|EDK77627.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           SP6-BS73]
 gi|183575411|gb|EDT95939.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           CDC3059-06]
          Length = 316

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 106/319 (33%), Positives = 171/319 (53%), Gaps = 15/319 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M+   H     HV VLL + I +L+  P  + +DAT G  G+S           ++ A D
Sbjct: 1   MTKEFH-----HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFD 55

Query: 66  RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120
           +D  A+   Q+ +  Y E+   +  +  F  LQ  + + GV   DG+ +DLGVSS Q+D 
Sbjct: 56  QDQNAIDNAQKRLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQ 115

Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS++K  PLDMRM+    ++A +VVN  +  DL RI    GE+K + +IA  I + 
Sbjct: 116 RERGFSYKKDAPLDMRMNQDASLTAYEVVNNYDYHDLVRIFFKYGEDKFSKQIARKIEQA 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R+  P +TT +L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A + 
Sbjct: 176 REVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMEM 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L   G + V++FHSLEDRL K+ F   S   +        +      + +++K ++P+ E
Sbjct: 236 LALDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLRPKMELVSRKPILPSAE 295

Query: 299 DVAFNRRSRSAKLRAGMRT 317
           ++  N RS SAKLR   + 
Sbjct: 296 ELEANNRSHSAKLRVARKI 314


>gi|15924169|ref|NP_371703.1| S-adenosyl-methyltransferase mraW [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|15926762|ref|NP_374295.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus N315]
 gi|21282791|ref|NP_645879.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus MW2]
 gi|49483342|ref|YP_040566.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|49486019|ref|YP_043240.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|148267671|ref|YP_001246614.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus JH9]
 gi|150393729|ref|YP_001316404.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156979500|ref|YP_001441759.1| hypothetical protein SAHV_1169 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|161509356|ref|YP_001575015.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|221140649|ref|ZP_03565142.1| S-adenosyl-methyltransferase [Staphylococcus aureus subsp. aureus
           str. JKD6009]
 gi|253314966|ref|ZP_04838179.1| S-adenosyl-methyltransferase [Staphylococcus aureus subsp. aureus
           str. CF-Marseille]
 gi|253733582|ref|ZP_04867747.1| S-adenosyl-methyltransferase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|255005966|ref|ZP_05144567.2| S-adenosyl-methyltransferase [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257425233|ref|ZP_05601658.1| methylase MraW [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257427893|ref|ZP_05604291.1| methylase MraW [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257430526|ref|ZP_05606908.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Staphylococcus aureus subsp. aureus 68-397]
 gi|257433287|ref|ZP_05609645.1| S-adenosyl-methyltransferase mraW [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257436129|ref|ZP_05612176.1| methylase MraW [Staphylococcus aureus subsp. aureus M876]
 gi|257795765|ref|ZP_05644744.1| methylase MraW [Staphylococcus aureus A9781]
 gi|258415989|ref|ZP_05682259.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus A9763]
 gi|258419736|ref|ZP_05682703.1| methylase MraW [Staphylococcus aureus A9719]
 gi|258444516|ref|ZP_05692845.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus A8115]
 gi|258447651|ref|ZP_05695795.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Staphylococcus aureus A6300]
 gi|258449493|ref|ZP_05697596.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus A6224]
 gi|258451877|ref|ZP_05699898.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus A5948]
 gi|258454872|ref|ZP_05702836.1| S-adenosyl-methyltransferase mraW [Staphylococcus aureus A5937]
 gi|262048753|ref|ZP_06021635.1| hypothetical protein SAD30_1583 [Staphylococcus aureus D30]
 gi|262051681|ref|ZP_06023900.1| hypothetical protein SA930_1508 [Staphylococcus aureus 930918-3]
 gi|269202794|ref|YP_003282063.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282892665|ref|ZP_06300900.1| methylase MraW [Staphylococcus aureus A8117]
 gi|282903731|ref|ZP_06311619.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus C160]
 gi|282905495|ref|ZP_06313350.1| methylase MraW [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282908470|ref|ZP_06316300.1| MraW methylase [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282910752|ref|ZP_06318555.1| MraW methylase [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282913955|ref|ZP_06321742.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus M899]
 gi|282916429|ref|ZP_06324191.1| methylase MraW [Staphylococcus aureus subsp. aureus D139]
 gi|282918877|ref|ZP_06326612.1| methylase MraW [Staphylococcus aureus subsp. aureus C427]
 gi|282919960|ref|ZP_06327689.1| methylase MraW [Staphylococcus aureus A9765]
 gi|282924000|ref|ZP_06331676.1| methylase MraW [Staphylococcus aureus subsp. aureus C101]
 gi|282929224|ref|ZP_06336799.1| methylase MraW [Staphylococcus aureus A10102]
 gi|283770241|ref|ZP_06343133.1| S-adenosyl-methyltransferase [Staphylococcus aureus subsp. aureus
           H19]
 gi|283957922|ref|ZP_06375373.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|284024103|ref|ZP_06378501.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus 132]
 gi|293500988|ref|ZP_06666839.1| methylase MraW [Staphylococcus aureus subsp. aureus 58-424]
 gi|293509946|ref|ZP_06668655.1| methylase MraW [Staphylococcus aureus subsp. aureus M809]
 gi|293526535|ref|ZP_06671220.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus M1015]
 gi|294848172|ref|ZP_06788919.1| methylase MraW [Staphylococcus aureus A9754]
 gi|295407117|ref|ZP_06816918.1| methylase MraW [Staphylococcus aureus A8819]
 gi|295427665|ref|ZP_06820297.1| methylase MraW [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|296276145|ref|ZP_06858652.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297208179|ref|ZP_06924609.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|297245997|ref|ZP_06929856.1| methylase MraW [Staphylococcus aureus A8796]
 gi|297591377|ref|ZP_06950015.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus MN8]
 gi|300912257|ref|ZP_07129700.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|304381261|ref|ZP_07363914.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|42560201|sp|P60392|RSMH_STAAN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|42560202|sp|P60393|RSMH_STAA8 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|42560203|sp|P60394|RSMH_STAAW RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|48474288|sp|P60485|RSMH_STAAM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|54036187|sp|Q6GA33|RSMH_STAAS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|54036188|sp|Q6GHQ6|RSMH_STAAR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262826623|sp|A7X1B8|RSMH_STAA1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262826627|sp|A6U0Z9|RSMH_STAA2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262826631|sp|A5IS65|RSMH_STAA9 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262826654|sp|A8Z3M0|RSMH_STAAT RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262831474|sp|Q2FHQ8|RSMH_STAA3 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|2149891|gb|AAC45622.1| unknown [Staphylococcus aureus]
 gi|13700978|dbj|BAB42274.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           N315]
 gi|14246949|dbj|BAB57341.1| S-adenosyl-methyltransferase mraW [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|21204229|dbj|BAB94927.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49241471|emb|CAG40157.1| MraW methylase family protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49244462|emb|CAG42890.1| MraW methylase family protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|147740740|gb|ABQ49038.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus JH9]
 gi|149946181|gb|ABR52117.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156721635|dbj|BAF78052.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|160368165|gb|ABX29136.1| S-adenosyl-methyltransferase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253728452|gb|EES97181.1| S-adenosyl-methyltransferase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257271690|gb|EEV03828.1| methylase MraW [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257274734|gb|EEV06221.1| methylase MraW [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257278654|gb|EEV09273.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Staphylococcus aureus subsp. aureus 68-397]
 gi|257281380|gb|EEV11517.1| S-adenosyl-methyltransferase mraW [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257284411|gb|EEV14531.1| methylase MraW [Staphylococcus aureus subsp. aureus M876]
 gi|257789737|gb|EEV28077.1| methylase MraW [Staphylococcus aureus A9781]
 gi|257839325|gb|EEV63799.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus A9763]
 gi|257844321|gb|EEV68703.1| methylase MraW [Staphylococcus aureus A9719]
 gi|257850009|gb|EEV73962.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus A8115]
 gi|257853842|gb|EEV76801.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Staphylococcus aureus A6300]
 gi|257857481|gb|EEV80379.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus A6224]
 gi|257860485|gb|EEV83312.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus A5948]
 gi|257863255|gb|EEV86019.1| S-adenosyl-methyltransferase mraW [Staphylococcus aureus A5937]
 gi|259160416|gb|EEW45441.1| hypothetical protein SA930_1508 [Staphylococcus aureus 930918-3]
 gi|259163209|gb|EEW47769.1| hypothetical protein SAD30_1583 [Staphylococcus aureus D30]
 gi|262075084|gb|ACY11057.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus ED98]
 gi|269940673|emb|CBI49052.1| MraW methylase family protein [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282313972|gb|EFB44364.1| methylase MraW [Staphylococcus aureus subsp. aureus C101]
 gi|282316687|gb|EFB47061.1| methylase MraW [Staphylococcus aureus subsp. aureus C427]
 gi|282319869|gb|EFB50217.1| methylase MraW [Staphylococcus aureus subsp. aureus D139]
 gi|282322023|gb|EFB52347.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus M899]
 gi|282325357|gb|EFB55666.1| MraW methylase [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282327532|gb|EFB57815.1| MraW methylase [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282330787|gb|EFB60301.1| methylase MraW [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282589183|gb|EFB94280.1| methylase MraW [Staphylococcus aureus A10102]
 gi|282594676|gb|EFB99660.1| methylase MraW [Staphylococcus aureus A9765]
 gi|282595349|gb|EFC00313.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus C160]
 gi|282764662|gb|EFC04787.1| methylase MraW [Staphylococcus aureus A8117]
 gi|283460388|gb|EFC07478.1| S-adenosyl-methyltransferase [Staphylococcus aureus subsp. aureus
           H19]
 gi|283470389|emb|CAQ49600.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus ST398]
 gi|283790071|gb|EFC28888.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|285816861|gb|ADC37348.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus 04-02981]
 gi|290920607|gb|EFD97670.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291095993|gb|EFE26254.1| methylase MraW [Staphylococcus aureus subsp. aureus 58-424]
 gi|291467396|gb|EFF09913.1| methylase MraW [Staphylococcus aureus subsp. aureus M809]
 gi|294824972|gb|EFG41394.1| methylase MraW [Staphylococcus aureus A9754]
 gi|294967970|gb|EFG43998.1| methylase MraW [Staphylococcus aureus A8819]
 gi|295128023|gb|EFG57657.1| methylase MraW [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|296886918|gb|EFH25821.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|297177161|gb|EFH36415.1| methylase MraW [Staphylococcus aureus A8796]
 gi|297576263|gb|EFH94979.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus MN8]
 gi|300886503|gb|EFK81705.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|304340244|gb|EFM06185.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|312438444|gb|ADQ77515.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus TCH60]
 gi|312829573|emb|CBX34415.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus ECT-R 2]
 gi|315130970|gb|EFT86954.1| S-adenosyl-methyltransferase [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|315196909|gb|EFU27252.1| S-adenosyl-methyltransferase [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|329313847|gb|AEB88260.1| Ribosomal RNA small subunit methyltransferase H [Staphylococcus
           aureus subsp. aureus T0131]
 gi|329725033|gb|EGG61529.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus 21189]
 gi|329727402|gb|EGG63858.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus 21172]
          Length = 311

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 100/308 (32%), Positives = 161/308 (52%), Gaps = 9/308 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H+ V+L + I  LN     V +D T G  G++            +IA+D+D  A+  
Sbjct: 1   MFHHISVMLNETIDYLNVKENGVYIDCTLGGAGHALYLLNQLNDDGRLIAIDQDQTAIDN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E ++D+  + +   + F +L   + D   + VDG+ +DLGVSS Q+D  +RGFS+   
Sbjct: 61  AKEVLKDHLHKVTFVHSNFRELTQILKDLNIEKVDGIYYDLGVSSPQLDIPERGFSYHHD 120

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM  +  ++A ++VN  + + L +I    GEEK + +IA  I   R+  P  TT 
Sbjct: 121 ATLDMRMDQTQELTAYEIVNNWSYEALVKIFYRYGEEKFSKQIARRIEAHREQQPITTTL 180

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I++ +    +    HPA R FQALRI VN+E+      +  A + +K  G + V+
Sbjct: 181 ELVDIIKEGIPAKARRKGGHPAKRVFQALRIAVNDELSAFEDSIEQAIELVKVDGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F          R   +   A+    + + +K +  T+ED+  N R+R
Sbjct: 241 TFHSLEDRLCKQVFQEYEKGPEVPRGLPVIPEAYTPKLKRVNRKPITATEEDLDDNNRAR 300

Query: 308 SAKLRAGM 315
           SAKLR   
Sbjct: 301 SAKLRVAE 308


>gi|163738706|ref|ZP_02146120.1| methyltransferase [Phaeobacter gallaeciensis BS107]
 gi|163741583|ref|ZP_02148974.1| S-adenosyl-methyltransferase MraW [Phaeobacter gallaeciensis 2.10]
 gi|161385317|gb|EDQ09695.1| S-adenosyl-methyltransferase MraW [Phaeobacter gallaeciensis 2.10]
 gi|161388034|gb|EDQ12389.1| S-adenosyl-L-methionine-dependent methyltransferase [Phaeobacter
           gallaeciensis BS107]
          Length = 335

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 157/328 (47%), Positives = 209/328 (63%), Gaps = 6/328 (1%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRD 67
           M++    + G HVPVLL  ++  + P  G+  LD TFGAGGYSR   + G+ +VI +DRD
Sbjct: 1   MTTDRPTSTGPHVPVLLRPLLKAVAPVSGR-WLDGTFGAGGYSRGLLEAGADHVIGVDRD 59

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
           P A    +  + DY  + +L Q  FS++ +Y  D  +DGVV DLGVSSMQ+D  +RGFSF
Sbjct: 60  PLAFEMAESWIGDYAGRLTLQQGVFSRMDEYAQD--LDGVVLDLGVSSMQLDLAERGFSF 117

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
            + GPLDMRMS  G SA+D+V + +   L  IL + GEE+ + RIA AIVK R  AP  T
Sbjct: 118 MRDGPLDMRMSQDGPSAADLVAELDEAALADILFLFGEERASRRIARAIVKARTEAPITT 177

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T  L+ +I+  +  SK  + HPATRSFQ LRI VN E EEL +GL +AE+ALK GGLL V
Sbjct: 178 TLQLAGIIEHCLPRSKPGQSHPATRSFQGLRIAVNAEYEELFEGLLAAERALKPGGLLAV 237

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPS-NAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+FHS+EDR+VK+FF  R+GK        P     P+ F  +T+K V P  E++A N RS
Sbjct: 238 VTFHSIEDRMVKRFFQHRAGKTGRANRYAPEVEETPSQFALVTRKAVGPDDEELAENPRS 297

Query: 307 RSAKLRAGMRTVERSIEDDSF-VHLPRL 333
           RSA+LR G RT    IE  +  + +P+L
Sbjct: 298 RSARLRVGRRTEATPIEISAKDIGMPQL 325


>gi|148983740|ref|ZP_01817059.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           SP3-BS71]
 gi|149013058|ref|ZP_01833924.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           SP19-BS75]
 gi|168484209|ref|ZP_02709161.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           CDC1873-00]
 gi|194398555|ref|YP_002037018.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae G54]
 gi|225856075|ref|YP_002737586.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae P1031]
 gi|262825679|sp|C1CIJ8|RSMH_STRZP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262826787|sp|B5E6Z2|RSMH_STRP4 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|4009486|gb|AAC95454.1| YllC [Streptococcus pneumoniae G54]
 gi|147763093|gb|EDK70035.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           SP19-BS75]
 gi|147923887|gb|EDK74999.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           SP3-BS71]
 gi|172042545|gb|EDT50591.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           CDC1873-00]
 gi|194358222|gb|ACF56670.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae G54]
 gi|225724871|gb|ACO20723.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae P1031]
 gi|301799463|emb|CBW32003.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae OXC141]
 gi|332077620|gb|EGI88081.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           GA41301]
 gi|332202242|gb|EGJ16311.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           GA41317]
          Length = 316

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 106/319 (33%), Positives = 170/319 (53%), Gaps = 15/319 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M+   H     HV VLL + I +L+  P  + +DAT G  G+S           ++ A D
Sbjct: 1   MTKEFH-----HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFD 55

Query: 66  RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120
           +D  A+   Q+ +  Y E+   +  +  F  LQ  + + GV   DG+ +DLGVSS Q+D 
Sbjct: 56  QDQNAIDNAQKRLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQ 115

Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS++K  PLDMRM+    ++A +VVN  +  DL RI    GE+K + +IA  I + 
Sbjct: 116 RERGFSYKKDAPLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQA 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R+  P +TT +L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   
Sbjct: 176 REVKPIETTTELAEIIKLVKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDM 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L   G + V++FHSLEDRL K+ F   S   +        +      + +++K ++P+ E
Sbjct: 236 LALDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAE 295

Query: 299 DVAFNRRSRSAKLRAGMRT 317
           ++  N RS SAKLR   + 
Sbjct: 296 ELEANNRSHSAKLRVARKI 314


>gi|56696072|ref|YP_166426.1| S-adenosyl-methyltransferase MraW [Ruegeria pomeroyi DSS-3]
 gi|68565435|sp|Q5LU79|RSMH_SILPO RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|56677809|gb|AAV94475.1| S-adenosyl-methyltransferase MraW [Ruegeria pomeroyi DSS-3]
          Length = 331

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 150/329 (45%), Positives = 206/329 (62%), Gaps = 7/329 (2%)

Query: 9   MS-SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDR 66
           MS +A   +   H+PVLL  ++A + P    + LD TFGAGGY+R     G+  VIA+DR
Sbjct: 1   MSRTAAPPSDDPHIPVLLRPLLAAVAPVS-GIWLDGTFGAGGYTRGLLAAGADRVIAVDR 59

Query: 67  DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126
           DP A        +DY ++  + Q  FS++ +Y  D  +DGVV DLGVSSMQ+D  +RGFS
Sbjct: 60  DPLAFELAAGWAKDYGDRLVMQQGVFSRMDEYASD--LDGVVLDLGVSSMQLDLAERGFS 117

Query: 127 FQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           F K GPLDMRMS  G SA+D+VN A   DL  IL   GEE+ + RIA AIVK R  AP +
Sbjct: 118 FMKDGPLDMRMSQEGPSAADLVNTATEADLADILFHYGEERASRRIARAIVKARAEAPIE 177

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           TT  L++L++  +   K  + HPATRSFQALRI VN E +EL +GL +AE+ALK GG L 
Sbjct: 178 TTLQLAALVESCLPRPKPGQSHPATRSFQALRIAVNAEYDELFEGLMAAERALKPGGKLA 237

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSN-AHPAVFQSITKKVVVPTQEDVAFNRR 305
           VV+FHS+EDR+VK+F  +R+G+        P        F+ +++K + P  +++A N R
Sbjct: 238 VVTFHSIEDRMVKRFLQARAGRSGRANRYAPETVEDAPQFELLSRKAIGPDDQELAENPR 297

Query: 306 SRSAKLRAGMRTVERSIE-DDSFVHLPRL 333
           +RSAKLR  +RT   +   D   + +P+L
Sbjct: 298 ARSAKLRVALRTDAPAGAVDAKSIGMPQL 326


>gi|125973496|ref|YP_001037406.1| S-adenosyl-methyltransferase MraW [Clostridium thermocellum ATCC
           27405]
 gi|263446119|sp|A3DE34|RSMH_CLOTH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|125713721|gb|ABN52213.1| S-adenosyl-methyltransferase MraW [Clostridium thermocellum ATCC
           27405]
          Length = 313

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 112/309 (36%), Positives = 169/309 (54%), Gaps = 11/309 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H PVLLE+ I+ L   P  V +D T G  G+S    K       +I LD+D FA+   QE
Sbjct: 5   HKPVLLEETISNLAIKPDGVYIDGTVGGAGHSGEILKRLDESGTLIGLDQDEFAIKTSQE 64

Query: 77  TMR--DYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +   + K +  L    F  +++         VDG++ DLGVSS Q+D   RGFS+ K  
Sbjct: 65  KLVQINSKAKIILVNTNFVNIKEVCQKNNIESVDGILLDLGVSSHQLDEASRGFSYNKDA 124

Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM   G ++A  +VN+   +++ RI+   GEEK ASRIA  IV+ R+    +TT +
Sbjct: 125 PLDMRMDRRGELTAKKIVNEYGREEIKRIIRDYGEEKWASRIAEFIVEARKKKEIETTGE 184

Query: 191 LSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I+  +   ++    HPA R+FQALRI VNNE+  LA+ +    + LK GG   +++
Sbjct: 185 LVDIIKAAIPSSARRGGPHPAKRTFQALRIAVNNELGILAKTIEDGTELLKPGGRFCIIT 244

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK  F  +    +  +   + +         + +K +VP ++++  N R+RS
Sbjct: 245 FHSLEDRIVKDEFNKKVNPCICPKQFPVCTCGRKPEGVLVNRKPIVPKEKELEENPRARS 304

Query: 309 AKLRAGMRT 317
           AKLR   + 
Sbjct: 305 AKLRVLEKI 313


>gi|253583641|ref|ZP_04860839.1| S-adenosyl-methyltransferase mraW [Fusobacterium varium ATCC 27725]
 gi|251834213|gb|EES62776.1| S-adenosyl-methyltransferase mraW [Fusobacterium varium ATCC 27725]
          Length = 313

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 107/306 (34%), Positives = 168/306 (54%), Gaps = 10/306 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H+PVL  + I  L      + LD T G GG+S    K       +I++D+D  A+   ++
Sbjct: 9   HIPVLYRESIDNLVINKDGIYLDCTLGGGGHSEGILKELSEKGRLISIDQDQQAIDFAKK 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  Y  ++ +F+  F  L   +   G   +DG++ D+GVSS Q+D  +RGFS++    L
Sbjct: 69  RLEKYGNKWQVFKNNFENLDTVIYMAGYDKIDGILMDIGVSSTQLDDPERGFSYRYDTKL 128

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+ +  +SA +VVN+ + + L +IL   GEE+ + RIA  I + R+    +TT +L 
Sbjct: 129 DMRMNQNNSLSAYEVVNEYSEEALMKILFEYGEERNSRRIAKFICEAREIKKIETTGELV 188

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           ++I++     +    HPA ++FQA+RI VN E+E L + +  A  +LK GG L +++FHS
Sbjct: 189 AIIKRAYP--ERAAKHPAKKTFQAIRIEVNRELEVLEKAIDKAVDSLKIGGRLGIITFHS 246

Query: 253 LEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDRLVK  F   +          I      A  + ITKK ++P   +V FN R+ S+KL
Sbjct: 247 LEDRLVKTKFKDLATACKCPPGLPICVCGGKAKVKLITKKPIIPEGNEVEFNNRAHSSKL 306

Query: 312 RAGMRT 317
           R   R 
Sbjct: 307 RVVERI 312


>gi|116513827|ref|YP_812733.1| S-adenosyl-methyltransferase MraW [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|116093142|gb|ABJ58295.1| SAM-dependent methyltransferase for cell envelope biogenesis
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
          Length = 305

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 102/304 (33%), Positives = 164/304 (53%), Gaps = 12/304 (3%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMRDY- 81
           + + I  L P  G   +DATFG GG++R   +     N+I  D+D +A+   Q     + 
Sbjct: 1   MHETIDNLAPQSGGTYVDATFGGGGHARYLLRKLDKGNLIGFDQDQYAIDTAQSNFAAFL 60

Query: 82  ----KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
               + +  L    FS L++ +      G+DG+ +DLGVSS Q+D  +RGFS++    LD
Sbjct: 61  KEDSQPRLQLVHNNFSHLKEELAKLGISGIDGIYYDLGVSSPQLDQAERGFSYRFDARLD 120

Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM  S    A  +VNQ + K L  +L   G+EK + +IA  IV+RR+  P +TT +L  
Sbjct: 121 MRMDQSQDFDAYQLVNQYDQKQLADVLYRYGDEKFSRQIARKIVERRRGKPIETTFELVE 180

Query: 194 LIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +I++ +  + +    HPA +SFQA+R+ VN+E++ L   L  A   L  GG + V++F S
Sbjct: 181 IIKEAIPAAARRRGGHPAKKSFQAIRVEVNHELDVLRASLEEAISLLNPGGRISVITFQS 240

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LED++VK+ F   S   +     +         + + +K +  ++E++A N RS SAKLR
Sbjct: 241 LEDKIVKQTFKKYSEVEIPRGMPVVPEGIKPTLRLVNRKSITASEEELAENNRSHSAKLR 300

Query: 313 AGMR 316
              +
Sbjct: 301 VAEK 304


>gi|289551038|ref|YP_003471942.1| S-adenosyl-methyltransferase MraW [Staphylococcus lugdunensis
           HKU09-01]
 gi|315658534|ref|ZP_07911406.1| S-adenosyl-methyltransferase MraW [Staphylococcus lugdunensis
           M23590]
 gi|289180570|gb|ADC87815.1| S-adenosyl-methyltransferase MraW [Staphylococcus lugdunensis
           HKU09-01]
 gi|315496863|gb|EFU85186.1| S-adenosyl-methyltransferase MraW [Staphylococcus lugdunensis
           M23590]
          Length = 311

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 103/309 (33%), Positives = 162/309 (52%), Gaps = 11/309 (3%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  HV V+L + I  LN  P  V +D T G  G++           ++IA+D+D  A+  
Sbjct: 1   MFHHVSVMLNETIDYLNIKPDGVYVDCTLGGAGHALYLLNQLNDEGHLIAIDQDTTAIDN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E ++ +  + +     F +L   + +   + VDG+ +DLGVSS Q+D  +RGFS+   
Sbjct: 61  AKEVLKAHLHKVTFVHNNFRELTHILKELNIEKVDGIYYDLGVSSPQLDVPERGFSYHHD 120

Query: 131 GPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM     +SA +VVN+ + + L +I    GEEK + +IA  I   R+  P +TT 
Sbjct: 121 AKLDMRMDRTQTLSAYEVVNEWSYEALVKIFYRYGEEKFSKQIARRIEAHRELQPIETTL 180

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L  +I++ +    +    HPA R FQA+RI VN+E+      +  A + +K  G + V+
Sbjct: 181 QLVDVIKEGIPAKARRKGGHPAKRVFQAIRIAVNDELSAFEDSIEQAIELVKVNGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           +FHSLEDRL K+ F          R   +IP    P   + + +K +  T+ED+  N R+
Sbjct: 241 TFHSLEDRLCKQIFQEYEKGPEVPRGLPIIPEEYTPK-LKRVNRKPITATEEDLNQNNRA 299

Query: 307 RSAKLRAGM 315
           RSAKLR   
Sbjct: 300 RSAKLRVAE 308


>gi|298369646|ref|ZP_06980963.1| S-adenosyl-methyltransferase MraW [Neisseria sp. oral taxon 014
           str. F0314]
 gi|298282203|gb|EFI23691.1| S-adenosyl-methyltransferase MraW [Neisseria sp. oral taxon 014
           str. F0314]
          Length = 323

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 124/318 (38%), Positives = 178/318 (55%), Gaps = 13/318 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           MS A  +    H+ VLL + +  LN  P  V +D TFG GG+SR           +I  D
Sbjct: 1   MSEAGEY---KHITVLLNEAVDALNIRPDGVYVDGTFGRGGHSRLILSRLGEEGRLIVFD 57

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGD 122
           +DP A+   ++ +  Y  + S+    FS  Q  + + G   VDG +FDLGVSS QID G 
Sbjct: 58  KDPQAIVAARK-LAAYDMRVSVVHDGFSVFQTALDELGIGKVDGALFDLGVSSPQIDEGG 116

Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF+   PLDMRM  + G+SA++ +  A+ +DL  ++   GEE+ + +IA AIV +R+
Sbjct: 117 RGFSFRFDAPLDMRMDPTRGMSAAEWIATASEQDLNEVIKNYGEERFSRQIARAIVAQRE 176

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            +P  TT+ L+ L+ + V   +  +  PATR+FQA+RIF+N E+EE+   L  A   LK 
Sbjct: 177 ESPIDTTRKLAQLVAQNVRTRERGQ-DPATRTFQAVRIFINRELEEIEAVLPQATGRLKE 235

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDV 300
           GG L V++FHSLEDR+VK+F   +S      R + +     P        K V P+  ++
Sbjct: 236 GGRLAVIAFHSLEDRIVKQFIKKQSQHAPLPRWVAVKEADLPQPPLRPVGKAVRPSDAEI 295

Query: 301 AFNRRSRSAKLRAGMRTV 318
             N RSRSA LR   RT 
Sbjct: 296 QANPRSRSAVLRVAERTA 313


>gi|149018026|ref|ZP_01834485.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           SP23-BS72]
 gi|147931590|gb|EDK82568.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           SP23-BS72]
          Length = 316

 Score =  376 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 106/319 (33%), Positives = 170/319 (53%), Gaps = 15/319 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M+   H     HV VLL + I +L+  P  + +DAT G  G+S           ++ A D
Sbjct: 1   MTKKFH-----HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFD 55

Query: 66  RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120
           +D  A+   Q+ +  Y E+   +  +  F  LQ  + + GV   DG+ +DLGVSS Q+D 
Sbjct: 56  QDQNAIDNAQKRLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQ 115

Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS++K  PLDMRM+    ++A +VVN  +  DL RI    GE+K + +IA  I + 
Sbjct: 116 RERGFSYKKDAPLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQA 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R+  P +TT +L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   
Sbjct: 176 REVKPIETTTELAEIIKLVKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDM 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L   G + V++FHSLEDRL K+ F   S   +        +      + +++K ++P+ E
Sbjct: 236 LALDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAE 295

Query: 299 DVAFNRRSRSAKLRAGMRT 317
           ++  N RS SAKLR   + 
Sbjct: 296 ELEANNRSHSAKLRVARKI 314


>gi|83858922|ref|ZP_00952444.1| hypothetical protein OA2633_05446 [Oceanicaulis alexandrii
           HTCC2633]
 gi|83853745|gb|EAP91597.1| hypothetical protein OA2633_05446 [Oceanicaulis alexandrii
           HTCC2633]
          Length = 334

 Score =  376 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 144/331 (43%), Positives = 196/331 (59%), Gaps = 9/331 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSNVIALDRDPFAVSCG 74
           +   H+PV+L++V+  L P  G + +D TFGAGGY+R         V+ +DRDP A    
Sbjct: 2   SDQPHIPVMLDEVLTHLQPRDGGLYVDGTFGAGGYTRGILGAADCRVLGIDRDPSARETA 61

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +     YK +F+     FS ++D +      GVDGVV DLGVSSMQ+D  +RGFSFQK G
Sbjct: 62  ERMKPAYKGRFAFGFGPFSMMEDIIEAAGSSGVDGVVLDLGVSSMQLDQAERGFSFQKDG 121

Query: 132 PLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           PLDMRMS SG +A+D VN     +L  I  + GEE+ A R A+AIV+ R+  P   T  L
Sbjct: 122 PLDMRMSQSGPTAADAVNHLEAHELAAIFKVYGEERHARRAANAIVRAREVEPITRTLVL 181

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + +I + V   K  RIHPATRSFQ LRI+VN+E+ EL +GL++AE+ L+  G L+VV+FH
Sbjct: 182 ADIIGRAV-GGKPGRIHPATRSFQGLRIYVNDELGELVRGLQAAERVLRPAGRLVVVTFH 240

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK F   R+G         P         F  ++KK +  T+ + A N RSRSA
Sbjct: 241 SLEDRIVKTFLRERAGLTGGGSRHQPEIQAERDPSFALVSKKALSATEAEAAENPRSRSA 300

Query: 310 KLRAGMRTVERSI--EDDSFVHLPRLPTLSQ 338
           KLRA +R    +   ED+ F  +P    L +
Sbjct: 301 KLRAAIRNEHEAWPREDEGFAGVPSYRRLEE 331


>gi|222053873|ref|YP_002536235.1| S-adenosyl-methyltransferase MraW [Geobacter sp. FRC-32]
 gi|263455960|sp|B9M164|RSMH_GEOSF RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|221563162|gb|ACM19134.1| S-adenosyl-methyltransferase MraW [Geobacter sp. FRC-32]
          Length = 312

 Score =  376 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 119/308 (38%), Positives = 178/308 (57%), Gaps = 9/308 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
            HV VL  +VIA L P PG + +D T G  G++R   +  +    +I  D+D  A++   
Sbjct: 5   KHVSVLPAEVIAYLAPRPGGIYVDGTLGGAGHARLILEASAPDGLLIGFDQDGQALASAG 64

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E +  + ++  L +  F+ L++ + + G+   DG + D+GVSS Q+D  +RGFSFQ   P
Sbjct: 65  ERLAPFGKRVVLVKRNFAFLEEALAEIGIEAIDGFLLDVGVSSHQLDTVERGFSFQHDAP 124

Query: 133 LDMRMSCSGIS-ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S  + A+++VN  + +DL R++   GEE+ A RIA  I+KRR+  P  TT  L
Sbjct: 125 LDMRMDLSAETTAAELVNTLSEEDLCRVIREYGEERWAKRIAAFIIKRREETPIATTLQL 184

Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+  V   +   R+HPATR+FQALRI VN+E+  L +GL    + LK GG  +V+SF
Sbjct: 185 VDVIKAAVPKGAWEVRLHPATRTFQALRIAVNDELASLEKGLSGGVRLLKKGGRGVVISF 244

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+ K  F S +      R +      +    + +T K VV  + +V+ N RSRSA
Sbjct: 245 HSLEDRIAKTTFRSLAQGCKCPREIPRCVCGNLPQVKVLTGKPVVANEVEVSSNPRSRSA 304

Query: 310 KLRAGMRT 317
           +LRA  + 
Sbjct: 305 RLRAVEKI 312


>gi|148996748|ref|ZP_01824466.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           SP11-BS70]
 gi|168576735|ref|ZP_02722593.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           MLV-016]
 gi|307066994|ref|YP_003875960.1| putative S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [Streptococcus pneumoniae
           AP200]
 gi|147757323|gb|EDK64362.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           SP11-BS70]
 gi|183577531|gb|EDT98059.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           MLV-016]
 gi|306408531|gb|ADM83958.1| Predicted S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [Streptococcus pneumoniae
           AP200]
          Length = 316

 Score =  376 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 106/319 (33%), Positives = 170/319 (53%), Gaps = 15/319 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M+   H     HV VLL + I +L+  P  + +DAT G  G+S           ++ A D
Sbjct: 1   MTKEFH-----HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFD 55

Query: 66  RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120
           +D  A+   Q+ +  Y E+   +  +  F  LQ  + + GV   DG+ +DLGVSS Q+D 
Sbjct: 56  QDQNAIDNAQKRLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQ 115

Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS++K  PLDMRM+    ++A +VVN  +  DL RI    GE+K + +IA  I + 
Sbjct: 116 RERGFSYKKDAPLDMRMNQDASLTAYEVVNHYDYHDLIRIFFKYGEDKFSKQIARKIEQA 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R+  P +TT +L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   
Sbjct: 176 REVKPIETTTELAEIIKLVKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDM 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L   G + V++FHSLEDRL K+ F   S   +        +      + +++K ++P+ E
Sbjct: 236 LALDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAE 295

Query: 299 DVAFNRRSRSAKLRAGMRT 317
           ++  N RS SAKLR   + 
Sbjct: 296 ELEANNRSHSAKLRVARKI 314


>gi|301793586|emb|CBW35963.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae INV104]
 gi|332204336|gb|EGJ18401.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           GA47901]
          Length = 316

 Score =  376 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 106/319 (33%), Positives = 169/319 (52%), Gaps = 15/319 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M+   H     HV VLL + I +L+  P  + +DAT G  G+S           ++ A D
Sbjct: 1   MTKEFH-----HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFD 55

Query: 66  RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120
           +D  A+   Q+ +  Y E+   +  +  F  LQ  + + GV   DG+ +DLGVSS Q+D 
Sbjct: 56  QDQNAIDNAQKRLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQ 115

Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS++K  PLDMRM+    ++A +VVN  +  DL RI    GE+K + +IA  I + 
Sbjct: 116 RERGFSYKKDAPLDMRMNQDASLTAYEVVNNYDYHDLVRIFFKYGEDKFSKQIARKIEQA 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R+  P +TT +L+ +I+      +   + HPA + FQA+RI VN+E+    + +  A   
Sbjct: 176 REVKPIETTTELAEIIKLVKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIHQAMDM 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L   G + V++FHSLEDRL K+ F   S   +        +      + +++K ++P+ E
Sbjct: 236 LALDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAE 295

Query: 299 DVAFNRRSRSAKLRAGMRT 317
           ++  N RS SAKLR   + 
Sbjct: 296 ELEANNRSHSAKLRVARKI 314


>gi|307126547|ref|YP_003878578.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae 670-6B]
 gi|306483609|gb|ADM90478.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae 670-6B]
          Length = 316

 Score =  376 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 106/319 (33%), Positives = 171/319 (53%), Gaps = 15/319 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M+   H     HV VLL + I +L+  P  + +DAT G  G+S           ++ A D
Sbjct: 1   MTKEFH-----HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFD 55

Query: 66  RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120
           +D  A+   Q+ +  Y E+   +  +  F  LQ  + + GV   DG+ +DLGVSS Q+D 
Sbjct: 56  QDQNAIDNAQKRLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQ 115

Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS++K  PLDMRM+    ++A +VVN  +  DL RI    GE+K + +IA  I + 
Sbjct: 116 RERGFSYKKDAPLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQV 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R+  P +TT +L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A + 
Sbjct: 176 REVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMEM 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L   G + V++FHSLEDRL K+ F   S   +        +      + +++K ++P+ E
Sbjct: 236 LALDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAE 295

Query: 299 DVAFNRRSRSAKLRAGMRT 317
           ++  N RS SAKLR   + 
Sbjct: 296 ELEANNRSHSAKLRVARKI 314


>gi|78221625|ref|YP_383372.1| S-adenosyl-methyltransferase MraW [Geobacter metallireducens GS-15]
 gi|123572785|sp|Q39YM7|RSMH_GEOMG RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|78192880|gb|ABB30647.1| methyltransferase [Geobacter metallireducens GS-15]
          Length = 313

 Score =  376 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 114/307 (37%), Positives = 180/307 (58%), Gaps = 10/307 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+ V+  +V+ALL+P PG V +D T G  G++R   +  S    ++  DRDP A++   +
Sbjct: 6   HLSVMPAEVLALLSPRPGGVYVDGTLGGAGHARMILEASSPDGVLVGFDRDPEALAAASK 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  + ++  L ++ F+ + + +   G+D   G + DLGVSS Q+D  +RGFSFQ   PL
Sbjct: 66  RIASFGDRVRLVRSNFAAMDESLATLGIDTIDGFLLDLGVSSHQLDTAERGFSFQVDAPL 125

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQTTQDL 191
           DMRM   +G +A+D+VN+ +  +L RI+   GEE+ A RIA  +VK R+   P ++T  L
Sbjct: 126 DMRMDPETGETAADLVNELSADELARIIREYGEERWAKRIASFVVKAREQHGPIESTLQL 185

Query: 192 SSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
              ++  +   +   RIHPATR+FQALRI VN+E+  L +GL +  + L  GG  +V+SF
Sbjct: 186 VDCVKGAIPRAAWEERIHPATRTFQALRIAVNDELGSLERGLVAGIERLAPGGRGVVISF 245

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  F   +      + +      +    + +T K V+   ++VA N R+RSA
Sbjct: 246 HSLEDRIVKTVFRRYAQGCTCPKMLPRCVCGNKPRVRILTGKPVMAGGDEVATNPRARSA 305

Query: 310 KLRAGMR 316
           K+RA  +
Sbjct: 306 KVRAVEK 312


>gi|116629844|ref|YP_815016.1| SAM-dependent methyltransferase for cell envelope biogenesis
           [Lactobacillus gasseri ATCC 33323]
 gi|238853964|ref|ZP_04644321.1| S-adenosyl-methyltransferase MraW [Lactobacillus gasseri 202-4]
 gi|311110516|ref|ZP_07711913.1| S-adenosyl-methyltransferase MraW [Lactobacillus gasseri MV-22]
 gi|122273218|sp|Q042P4|RSMH_LACGA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|116095426|gb|ABJ60578.1| SAM-dependent methyltransferase for cell envelope biogenesis
           [Lactobacillus gasseri ATCC 33323]
 gi|238833409|gb|EEQ25689.1| S-adenosyl-methyltransferase MraW [Lactobacillus gasseri 202-4]
 gi|311065670|gb|EFQ46010.1| S-adenosyl-methyltransferase MraW [Lactobacillus gasseri MV-22]
          Length = 315

 Score =  376 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 109/311 (35%), Positives = 170/311 (54%), Gaps = 13/311 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76
            H  VLL + I  LNP    + +DATFG GG++R      +   VI  D+D +A+S  +E
Sbjct: 4   KHKSVLLHETIDNLNPKDDGLYVDATFGGGGHARYLLSKLNRGTVIGFDQDEYAISMAKE 63

Query: 77  TMRD-----YKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSF 127
           +  +      + +  L    F  L++ + +     G+DG+ +DLGVSS Q D  +RGFS+
Sbjct: 64  SFAEELKPGAEPKLILVHDNFCHLKENLVELGISDGIDGIYYDLGVSSPQFDQPERGFSY 123

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           +    LDMRM  S  + A  +VN  + K+L+ IL   G+EK + +IA  IV RR+  P  
Sbjct: 124 RFDARLDMRMDQSQELDAYTIVNTWSQKELSDILYKYGDEKFSRQIARKIVDRRREKPIV 183

Query: 187 TTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           TT DL  +I+  +   ++ +  HPA +SFQA+R+ VNNE+  L + L  A K LK GG +
Sbjct: 184 TTFDLVDVIKDAIPAYARRSGGHPAKKSFQAIRVAVNNELGVLQESLEEAIKLLKPGGRI 243

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
            V++F S ED++VKK F   S   +     +         + I++K ++ + +++  N R
Sbjct: 244 SVITFQSHEDKIVKKIFKKYSEVEIPRGMPMIPADSKPTLRLISRKPIMASSDELEENNR 303

Query: 306 SRSAKLRAGMR 316
           S SAKLR   +
Sbjct: 304 SHSAKLRVAEK 314


>gi|15900265|ref|NP_344869.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae TIGR4]
 gi|111657194|ref|ZP_01407969.1| hypothetical protein SpneT_02001591 [Streptococcus pneumoniae
           TIGR4]
 gi|262827209|sp|P0CB58|RSMH_STRPN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|14971807|gb|AAK74509.1| yllC protein [Streptococcus pneumoniae TIGR4]
          Length = 316

 Score =  376 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 106/319 (33%), Positives = 170/319 (53%), Gaps = 15/319 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M+   H     HV VLL + I +L+  P  + +DAT G  G+S           ++ A D
Sbjct: 1   MTKEFH-----HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFD 55

Query: 66  RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120
           +D  A+   Q+ +  Y E+   +  +  F  LQ  + + GV   DG+ +DLGVSS Q+D 
Sbjct: 56  QDQNAIDNAQKRLAPYIEKGMVTFIKDNFRHLQACLREAGVQEIDGICYDLGVSSPQLDQ 115

Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS++K  PLDMRM+    ++A +VVN  +  DL RI    GE+K + +IA  I + 
Sbjct: 116 RERGFSYKKDAPLDMRMNQDASLTAYEVVNNYDYHDLVRIFFKYGEDKFSKQIARKIEQA 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R+  P +TT +L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   
Sbjct: 176 REVKPIETTTELAEIIKLVKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDM 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L   G + V++FHSLEDRL K+ F   S   +        +      + +++K ++P+ E
Sbjct: 236 LALDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAE 295

Query: 299 DVAFNRRSRSAKLRAGMRT 317
           ++  N RS SAKLR   + 
Sbjct: 296 ELEANNRSHSAKLRVVRKI 314


>gi|302332784|gb|ADL22977.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus JKD6159]
          Length = 311

 Score =  376 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 100/308 (32%), Positives = 161/308 (52%), Gaps = 9/308 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H+ V+L + I  LN     V +D T G  G++            +IA+D+D  A+  
Sbjct: 1   MFHHISVMLNETIDYLNVKENGVYIDCTLGGAGHALYLLNQLNDDGRLIAIDQDQAAIDN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E ++D+  + +   + F +L   + D   + VDG+ +DLGVSS Q+D  +RGFS+   
Sbjct: 61  AKEVLKDHLHKVTFVHSNFRELTQILKDLNIEKVDGIYYDLGVSSPQLDIPERGFSYHHD 120

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM  +  ++A ++VN  + + L +I    GEEK + +IA  I   R+  P  TT 
Sbjct: 121 ATLDMRMDQTQELTAYEIVNNWSYEALVKIFYRYGEEKFSKQIARRIEAHREQQPITTTL 180

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I++ +    +    HPA R FQALRI VN+E+      +  A + +K  G + V+
Sbjct: 181 ELVDIIKEGIPAKARRKGGHPAKRVFQALRIAVNDELSAFEDSIEQAIELVKVDGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F          R   +   A+    + + +K +  T+ED+  N R+R
Sbjct: 241 TFHSLEDRLCKQVFQEYEKGPEVPRGLPVVPEAYTPKLKRVNRKPITATEEDLDDNNRAR 300

Query: 308 SAKLRAGM 315
           SAKLR   
Sbjct: 301 SAKLRVAE 308


>gi|309776027|ref|ZP_07671019.1| S-adenosyl-methyltransferase MraW [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308916309|gb|EFP62057.1| S-adenosyl-methyltransferase MraW [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 311

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 114/311 (36%), Positives = 166/311 (53%), Gaps = 9/311 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           +  H  VLL++ I  L      + +D T G GG+S          ++ A DRD  A+   
Sbjct: 1   MMKHYSVLLQESIDNLAIRSDGIYVDGTLGRGGHSAEILARIPQGHLYAFDRDASAIEES 60

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +E +       +L  + FS ++  +  +GV   DG+V DLGVSS Q D   RGFS++   
Sbjct: 61  RERLTRIGSNVTLIHSNFSNVKSELEARGVTGIDGMVLDLGVSSPQFDEAQRGFSYRFDA 120

Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  S  +SA  VVN+   ++L RI    GEE  A +IA  I K R++ P +TT +
Sbjct: 121 PLDMRMDQSQQLSAYQVVNEWEYQELVRIFFQFGEESFAKQIARKIEKARETKPIETTLE 180

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I+  +     N + HPA + FQA+RI VN+E+ EL   LR A   L  GG L V+S
Sbjct: 181 LVDVIKSALPAKVLNKKGHPAKKVFQAIRIAVNDELGELQMVLRDALALLHVGGRLCVIS 240

Query: 250 FHSLEDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           F SLEDR+VK  F + S      +   ++P +   A ++ + KK +  T++++  N RS 
Sbjct: 241 FQSLEDRIVKDTFVACSKPKQYDKRLPILPQDMEEAPYRLVNKKPITATEDELRENMRSH 300

Query: 308 SAKLRAGMRTV 318
           SAKLR   R  
Sbjct: 301 SAKLRCIERIR 311


>gi|197116881|ref|YP_002137308.1| S-adenosyl-methyltransferase MraW [Geobacter bemidjiensis Bem]
 gi|263447558|sp|B5EBP3|RSMH_GEOBB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|197086241|gb|ACH37512.1| SAM-dependent membrane protein methyltransferase MraW [Geobacter
           bemidjiensis Bem]
          Length = 312

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 117/308 (37%), Positives = 171/308 (55%), Gaps = 9/308 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
            H+ VL ++V+  L+P  G V +D T G  G++            +I  DRD  A++  +
Sbjct: 5   HHISVLPDEVLQALSPRSGGVYVDGTLGGAGHAGLILTASAPDGQLIGFDRDEEAIAVAR 64

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVV---FDLGVSSMQIDCGDRGFSFQKSGP 132
           E ++ +  +  +    F+ +   + + GVDG+     DLGVSS Q+D  +RGFSF    P
Sbjct: 65  ERLQVFGGRVRIIHRNFAGIAQALAEIGVDGIDGFVLDLGVSSHQLDRDERGFSFMHDAP 124

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM   SG SA+D+VN     +L RI+   GEE+ A R+A  IVK R   P +TT  L
Sbjct: 125 LDMRMDRSSGQSAADLVNTLPEGELYRIISEYGEERWAKRVASFIVKARDERPIETTLQL 184

Query: 192 SSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+ ++  +K   R+HPATR+FQALRI VN E++ L +GL      LK GG   V+SF
Sbjct: 185 VDVIKGSIPKAKWEERLHPATRTFQALRIAVNEELKSLEEGLEGLLSLLKQGGRGAVISF 244

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK+ F + +      +   I        F+ +T+K +   + +VA N RSRSA
Sbjct: 245 HSLEDRIVKEGFRAAATGCTCPKELPICICGRVPRFKLVTRKPITAGEAEVAANPRSRSA 304

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 305 KLRVVEKI 312


>gi|269838022|ref|YP_003320250.1| S-adenosyl-methyltransferase MraW [Sphaerobacter thermophilus DSM
           20745]
 gi|269787285|gb|ACZ39428.1| S-adenosyl-methyltransferase MraW [Sphaerobacter thermophilus DSM
           20745]
          Length = 326

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 129/305 (42%), Positives = 182/305 (59%), Gaps = 8/305 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H PV+L + + LL   PG   +DATFG GG++R+  +       V+ALD DP AV+  + 
Sbjct: 20  HQPVMLAESLNLLQVRPGGRYIDATFGGGGHTRAILEASSPDGRVLALDADPAAVARAEA 79

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
              +   + ++    F+Q+       G   VDGV+ DLG SS QID   RGFSFQ+ GPL
Sbjct: 80  LAEEVGPRLTVRHGNFAQIARLARAAGFDAVDGVLMDLGFSSFQIDEPSRGFSFQRPGPL 139

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMR   + G SA ++VN  +  DL+RI+   GEE +A RIA AIV  R+  P +TT  L+
Sbjct: 140 DMRFDPTTGSSAREIVNTWDEADLSRIIFEYGEEPKARRIARAIVAARRERPIETTDHLA 199

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +++++ V   +   IHPATR+FQALRI VN E+E L QGL  A   L  GG L+V++FHS
Sbjct: 200 AIVEQAVGGRRGRAIHPATRTFQALRIAVNRELEVLEQGLAGALDVLAPGGRLVVIAFHS 259

Query: 253 LEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK++F + +   +      +    H A  + +T K + PT+ + A N RSRSA+L
Sbjct: 260 LEDRIVKQYFRTEARDCICPPETPVCVCGHRARLRVVTPKPLRPTEAEQALNPRSRSARL 319

Query: 312 RAGMR 316
           RA  R
Sbjct: 320 RAAER 324


>gi|114327101|ref|YP_744258.1| S-adenosyl-methyltransferase MraW [Granulibacter bethesdensis
           CGDNIH1]
 gi|122327917|sp|Q0BV17|RSMH_GRABC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|114315275|gb|ABI61335.1| S-adenosyl-methyltransferase mraW [Granulibacter bethesdensis
           CGDNIH1]
          Length = 334

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 140/310 (45%), Positives = 189/310 (60%), Gaps = 9/310 (2%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAV 71
           H + G HVPVLL +V+  L+PAPG V LD TFG GGY+R+      +  V A+DRDP A+
Sbjct: 18  HSSTGTHVPVLLNEVLETLSPAPGGVFLDGTFGGGGYTRAILDTAEDSTVWAVDRDPAAI 77

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQ 128
           + G+     Y+ +  L Q  FSQ+   + D+GV   DG+V D+GVSS QID  DRGFSF+
Sbjct: 78  TRGEALAARYRGRLHLIQGNFSQMASLLTDRGVNALDGIVLDIGVSSFQIDDPDRGFSFR 137

Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             GPLDMRM+  G SA+D++ +    ++  IL  LGEE+++ +IA AIV  R   P  TT
Sbjct: 138 TDGPLDMRMAGEGTSAADLIARLPEAEIANILYELGEERKSRQIARAIVSARAEEPITTT 197

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+S+I+  V   + + I PATRSFQALRI VN+E+ EL + L+ A   L+ GG L++V
Sbjct: 198 GRLASIIRCVVPPDR-SGIDPATRSFQALRIAVNDELGELERALQQATNLLQPGGRLVIV 256

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA---HPAVFQSITKKVVVPTQEDVAFNRR 305
           SFHSLEDR+VK+F    +G   +     P          F+ IT K V P   +   N R
Sbjct: 257 SFHSLEDRIVKRFMNDAAGNAPSPSRYDPRGLVARTEPRFRLITSKAVRPGTAEQNANPR 316

Query: 306 SRSAKLRAGM 315
           SRSA+LRA  
Sbjct: 317 SRSARLRAIE 326


>gi|227824963|ref|ZP_03989795.1| S-adenosyl-methyltransferase mraW [Acidaminococcus sp. D21]
 gi|226905462|gb|EEH91380.1| S-adenosyl-methyltransferase mraW [Acidaminococcus sp. D21]
          Length = 311

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 103/307 (33%), Positives = 168/307 (54%), Gaps = 11/307 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQE 76
           H  VLL + +  +   P  + +D T G  G+S +          +I +D+D  A+    +
Sbjct: 7   HKSVLLRESVDWIVTDPKGIYVDCTLGGAGHSHAIAEELDPEGLLIGIDQDEDAIMAASK 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + D   +  +  + F  L   +       VDG+ FDLGVSS Q+D  +RGFS+   GPL
Sbjct: 67  RLEDAACKVKIVHSNFRNLGTILEGLNLQEVDGIFFDLGVSSYQLDTPERGFSYMHDGPL 126

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM   G ++A+DVVN    +DL  ++   GEE+ + RIA  IV++R+  P +TT DL 
Sbjct: 127 DMRMDQEGKLTAADVVNTYKEEDLADLIYKYGEERWSRRIAQFIVEKRKEKPLRTTSDLV 186

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           S+I+  +    + +  HPA R+FQA+RI VN+E++ L   + +A K LK GG + V++FH
Sbjct: 187 SVIKAAIPKKARQDGPHPAKRTFQAIRIEVNDELKILDSTMETAVKHLKKGGRIGVITFH 246

Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR++K+ F   +   +      +    H    + +  K  +P++ ++  N R+RSA+
Sbjct: 247 SLEDRIIKQSFKRMAKGCICPPELPVCVCGHKPELKKL--KEFIPSETELEDNPRARSAR 304

Query: 311 LRAGMRT 317
           LR  ++ 
Sbjct: 305 LRGAIKI 311


>gi|257463543|ref|ZP_05627936.1| methyltransferase [Fusobacterium sp. D12]
 gi|317061098|ref|ZP_07925583.1| S-adenosyl-methyltransferase mraW [Fusobacterium sp. D12]
 gi|313686774|gb|EFS23609.1| S-adenosyl-methyltransferase mraW [Fusobacterium sp. D12]
          Length = 313

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 110/307 (35%), Positives = 174/307 (56%), Gaps = 10/307 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H+PVL E+ +  L   P  + +D T G G +S    K       +I++D+D  A++  ++
Sbjct: 9   HIPVLYEETLENLLWNPDGIYIDCTLGGGSHSEGILKRLSEKGRLISIDQDASAIAFCKK 68

Query: 77  TMRDYKEQFSLFQATFSQLQ--DYVPD-KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  Y +Q+S+FQ  F  +    Y+     VDG++ D+GVSS Q+D G+RGFS++    L
Sbjct: 69  RLEKYGKQWSVFQNNFENIDIVSYLAGLDKVDGILMDIGVSSTQLDDGERGFSYRYDAKL 128

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+    +SA +VVNQ   +DL RIL   GEE+ A +IA  I + R+  P +TT +L 
Sbjct: 129 DMRMNAEQELSAYEVVNQYAEQDLVRILFEYGEERYAKKIAAFICENRKEKPIETTGELV 188

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           ++I++     +    HPA ++FQA+R+ VN E+E L   ++ + + LK  G L +++FHS
Sbjct: 189 AIIKRAYP--ERAAKHPAKKTFQAIRMEVNRELEVLETAIQKSVELLKPKGRLAIITFHS 246

Query: 253 LEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDRLVK  F   +          +      A  + ITKK ++P++E+V  N R+ S+KL
Sbjct: 247 LEDRLVKTVFKDLARACKCPPELPVCVCGGKAKVKIITKKPILPSEEEVGKNNRAHSSKL 306

Query: 312 RAGMRTV 318
           R   R  
Sbjct: 307 RIVERLA 313


>gi|317129306|ref|YP_004095588.1| S-adenosyl-methyltransferase MraW [Bacillus cellulosilyticus DSM
           2522]
 gi|315474254|gb|ADU30857.1| S-adenosyl-methyltransferase MraW [Bacillus cellulosilyticus DSM
           2522]
          Length = 310

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 103/309 (33%), Positives = 165/309 (53%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSC 73
           + +H  VL E+ +  LN     V +D T G GG+S            +I+ D+D  A+S 
Sbjct: 1   MFEHETVLKEETVKGLNIHEDGVYVDCTLGGGGHSERIASMLGANGKLISFDQDEVALSH 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E +  ++++     + F  L+  +   G   VDG VFDLGVSS Q D  +RGFS++  
Sbjct: 61  AKERLAPFRDKIIFVHSNFQYLKQELTHLGYSSVDGFVFDLGVSSPQFDEPERGFSYRFD 120

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM     ++A +VVN    +D+ +++   GEE+ A  IA  I K R+ +P +TT 
Sbjct: 121 APLDMRMDRGQSLTAYEVVNNWPFEDIMKVISRYGEERFAKHIARKIEKAREVSPIKTTF 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I+  +   ++    HPA R+FQA+RI VN+E+    Q L  A       G + V+
Sbjct: 181 ELVDIIKDAIPAPARRKGGHPAKRTFQAIRIAVNDELNVFEQALYDAIDMTTEKGRIAVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+ K  F ++S      R   +   +H      + KK ++ ++E++  N R++
Sbjct: 241 TFHSLEDRICKHVFKNKSTPKDLPRGLPVIPESHKPELMLVNKKPILASEEELENNSRAQ 300

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 301 SAKLRIAEK 309


>gi|160946332|ref|ZP_02093541.1| hypothetical protein PEPMIC_00292 [Parvimonas micra ATCC 33270]
 gi|158447448|gb|EDP24443.1| hypothetical protein PEPMIC_00292 [Parvimonas micra ATCC 33270]
          Length = 310

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 105/307 (34%), Positives = 167/307 (54%), Gaps = 8/307 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76
           +H+P++L +VI  L+  P  + +D T G  G+S    K      +I +D+D  A+S  ++
Sbjct: 4   NHIPIMLNEVIDNLDIKPNGIYVDLTVGGAGHSTEILKRIKNGKLICVDQDEEALSVARD 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +    +    +++ F   ++ +   G   VDGV+ D+GVSS QID G RGFS+    PL
Sbjct: 64  RLLKISDNVLFYKSNFENFKEILDYFGIDKVDGVLLDIGVSSYQIDNGQRGFSYMIDAPL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM      SA DVVN  N +DL  I    GEEK   RI   IV  R+    +TT +L 
Sbjct: 124 DMRMDRDLKKSAFDVVNYYNSEDLEYIFYNYGEEKWTKRIVEFIVNYRKEKLIETTFELV 183

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I++ +  + +    HPA R FQA+RI VN E+E + + +    + L   G L +++FH
Sbjct: 184 DIIERAIPKAVRAKGGHPAKRVFQAIRIEVNRELEVIKKVIPDIVERLNKNGRLCIITFH 243

Query: 252 SLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK  F   +   +  + + +    +    + +TKK +VP++E++  N RS+S+K
Sbjct: 244 SLEDRIVKDSFKELARGCICPKELYVCVCNNKPKIKILTKKPLVPSEEEMNRNPRSKSSK 303

Query: 311 LRAGMRT 317
           LR   + 
Sbjct: 304 LRICSKI 310


>gi|258423777|ref|ZP_05686663.1| methylase MraW [Staphylococcus aureus A9635]
 gi|257846009|gb|EEV70037.1| methylase MraW [Staphylococcus aureus A9635]
          Length = 311

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 100/308 (32%), Positives = 161/308 (52%), Gaps = 9/308 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H+ V+L + I  LN     V +D T G  G++            +IA+D+D  A+  
Sbjct: 1   MFHHISVMLNETIDYLNVKENGVYIDCTLGGAGHALYLLNQLNDDGRLIAIDQDQTAIDN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E ++D+  + +   + F +L   + D   + VDG+ +DLGVSS Q+D  +RGFS+   
Sbjct: 61  AKEVLKDHLHKVTFVHSNFRELTQILKDLNIEKVDGIYYDLGVSSPQLDIPERGFSYHHD 120

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM  +  ++A ++VN  + + L +I    GEEK + +IA  I   R+  P  TT 
Sbjct: 121 ATLDMRMDQTQELTAYEIVNNWSYEALVKIFYRYGEEKFSKQIARRIEAHREQQPITTTL 180

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I++ +    +    HPA R FQALRI VN+E+      +  A + +K  G + V+
Sbjct: 181 ELVDIIKEGIPAKARRKGGHPAKRVFQALRIAVNDELSAFEDSIEQAIELVKVEGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F          R   +   A+    + + +K +  T+ED+  N R+R
Sbjct: 241 TFHSLEDRLCKQVFQEYEKGPEVPRGLPVIPEAYTPKLKRVNRKPITATEEDLDDNNRAR 300

Query: 308 SAKLRAGM 315
           SAKLR   
Sbjct: 301 SAKLRVAE 308


>gi|238855278|ref|ZP_04645597.1| S-adenosyl-methyltransferase MraW [Lactobacillus jensenii 269-3]
 gi|260664637|ref|ZP_05865489.1| MraW methylase [Lactobacillus jensenii SJ-7A-US]
 gi|282932429|ref|ZP_06337854.1| S-adenosyl-methyltransferase MraW [Lactobacillus jensenii 208-1]
 gi|313471907|ref|ZP_07812399.1| S-adenosyl-methyltransferase MraW [Lactobacillus jensenii 1153]
 gi|238832170|gb|EEQ24488.1| S-adenosyl-methyltransferase MraW [Lactobacillus jensenii 269-3]
 gi|239529171|gb|EEQ68172.1| S-adenosyl-methyltransferase MraW [Lactobacillus jensenii 1153]
 gi|260561702|gb|EEX27674.1| MraW methylase [Lactobacillus jensenii SJ-7A-US]
 gi|281303378|gb|EFA95555.1| S-adenosyl-methyltransferase MraW [Lactobacillus jensenii 208-1]
          Length = 317

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 108/314 (34%), Positives = 170/314 (54%), Gaps = 13/314 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSC 73
           T   H  VLL + I  LN     + +DATFG GG++R      +N  ++  D+D +A++ 
Sbjct: 3   TNFKHTSVLLRETIDNLNVKDNGLYVDATFGGGGHARYLLSKLNNGILVGFDQDNYAINA 62

Query: 74  GQETMRDY-----KEQFSLFQATFSQLQDYVP----DKGVDGVVFDLGVSSMQIDCGDRG 124
            ++   DY     +    +    FS + + +     + G+DG+ +DLGVSS Q D  DRG
Sbjct: 63  AKDNFYDYLSDNHQPHLIMVHDNFSHVTENLNKLGFNDGIDGIYYDLGVSSPQFDQPDRG 122

Query: 125 FSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           FS++    LDMRM+    + A  VVN  +   L  IL   G+EK + +IA  IV+RRQ  
Sbjct: 123 FSYRFDARLDMRMNQEQELDAYQVVNSYSQSQLADILYQYGDEKFSRQIARKIVQRRQQK 182

Query: 184 PFQTTQDLSSLIQKTVYFSKNN-RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           P +TT +L  LI++ +  +K     HPA +SFQA+R+ VN+E++ L   L+ A + LK G
Sbjct: 183 PIETTFELVELIKEAIPAAKRRTGGHPAKKSFQAIRVEVNHELDSLKASLQEAIELLKPG 242

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G + V++F S ED++VKK F   S   +     +  +      + + +K ++ T  ++A 
Sbjct: 243 GRISVITFQSHEDKIVKKIFKQNSEVEVPRGIPVIPDNLKPKLKLVNRKPILATASELAD 302

Query: 303 NRRSRSAKLRAGMR 316
           N RS SAKLR   +
Sbjct: 303 NNRSHSAKLRVAEK 316


>gi|218281029|ref|ZP_03487608.1| hypothetical protein EUBIFOR_00167 [Eubacterium biforme DSM 3989]
 gi|218217710|gb|EEC91248.1| hypothetical protein EUBIFOR_00167 [Eubacterium biforme DSM 3989]
          Length = 308

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 106/305 (34%), Positives = 162/305 (53%), Gaps = 7/305 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76
           +H+ VLL + I +L      + +D T G GG+S    K     ++ A D D  A+     
Sbjct: 2   EHISVLLNESIDMLQIKEDGIYVDCTLGRGGHSSEILKRLTSGHLYAFDCDQNAIDESMP 61

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++   +QF+L  + F  L+  +  +GV   DG+  DLGVSS Q D   RGFS++    L
Sbjct: 62  RLKAIGDQFTLIHSPFENLKSELAKRGVNFVDGIFMDLGVSSPQFDDAQRGFSYRWDARL 121

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  S  + A  VVN  + +DL RIL   GEE  A +IA  I K R+ AP +TT +L 
Sbjct: 122 DMRMDQSQELDAYVVVNTYDKEDLIRILKRYGEEPFAQKIADKICKAREIAPIETTFELV 181

Query: 193 SLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  +  +    + HPA ++FQA+RI VN+E+E+L   L      L   G + V++FH
Sbjct: 182 DVIKSALPAAVLRKKGHPAKQTFQAIRIEVNHELEQLETVLHDGLTMLNPHGRMAVITFH 241

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+VK+ F   +      + +         +Q + +K V+ + E++  N R+ SAKL
Sbjct: 242 SLEDRIVKEIFKEVAVAKKVNKRLPQVGTENLEYQLVNRKPVLASSEELEMNNRAHSAKL 301

Query: 312 RAGMR 316
           R   +
Sbjct: 302 RGIEK 306


>gi|225175505|ref|ZP_03729499.1| S-adenosyl-methyltransferase MraW [Dethiobacter alkaliphilus AHT 1]
 gi|225168834|gb|EEG77634.1| S-adenosyl-methyltransferase MraW [Dethiobacter alkaliphilus AHT 1]
          Length = 320

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 122/310 (39%), Positives = 187/310 (60%), Gaps = 10/310 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H PVLL++ ++ L P PG+V +D T G GG+SR+  +       +IA+D+D  A++  +E
Sbjct: 6   HEPVLLQETLSALAPRPGEVFVDGTVGGGGHSRAILEKITPHGRLIAIDQDKNALAAAKE 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           T+  ++E  +     F+ LQD +  +GV   DG++ D+GVSS Q+D G+RGFSF    PL
Sbjct: 66  TLAPWREHVTFVHNNFANLQDVLESEGVQKVDGILLDIGVSSHQLDEGERGFSFNTEAPL 125

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQTTQDL 191
           DMRM+   G++A+ +VN+ + ++LTRIL   GEE  A RIA  +V RR++  P +TT  L
Sbjct: 126 DMRMNRDKGVTAAQLVNELDAEELTRILRDYGEELWARRIAEFMVARRKNHGPIETTGQL 185

Query: 192 SSLIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+  +      R  HPA R+FQALRI VN+E+  L + +      LK GG L V++F
Sbjct: 186 VDVIKAAIPARARRRGPHPARRTFQALRIAVNDELGVLERAVNDGIDCLKTGGRLAVITF 245

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VKK F  R+        +   +  + A  + +T K V   ++++  N R+RSA
Sbjct: 246 HSLEDRMVKKIFQHRAAGCQCPPGLPQCACGNQAHVKILTGKPVQAKEDELERNPRARSA 305

Query: 310 KLRAGMRTVE 319
           KLRA ++ + 
Sbjct: 306 KLRAVIKVLN 315


>gi|49474464|ref|YP_032506.1| S-adenosyl-methyltransferase MraW [Bartonella quintana str.
           Toulouse]
 gi|54036185|sp|Q6G116|RSMH_BARQU RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|49239968|emb|CAF26373.1| hypothetical protein BQ08940 [Bartonella quintana str. Toulouse]
          Length = 332

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 163/322 (50%), Positives = 209/322 (64%), Gaps = 3/322 (0%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+PVLL+ V+A L P  G  ++D TFGAGGY+R+    G+ VIALDRDP AV  GQ  + 
Sbjct: 11  HIPVLLQPVLAGLMPLIGAKVIDGTFGAGGYTRALLNAGAQVIALDRDPHAVREGQSLVD 70

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
           ++  +  L Q  FSQL   V +  VD V+ D+GVSSMQ D  +RGFSFQK GPLDMRM+ 
Sbjct: 71  EFFPRLRLMQMEFSQLDRVVEE-KVDAVILDIGVSSMQFDEAERGFSFQKDGPLDMRMAQ 129

Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199
           +G +A DVVN+    DL RI  ILGEE+ A RIA  I KRR   PF  T DL+  I+  V
Sbjct: 130 TGFTAGDVVNRLKKDDLARIFKILGEERYAGRIARMIEKRRCVQPFLRTGDLAHAIEALV 189

Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259
                +RIHPATR FQALRI+VN+EI ELA+GL +AE  LK GG L VVSFHSLEDR+VK
Sbjct: 190 GRKPGDRIHPATRVFQALRIYVNDEIGELARGLFAAESVLKPGGRLGVVSFHSLEDRMVK 249

Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319
           +FF++RSG     R++    A PA F S+ K  +  ++E++  N RSRSA+LR G+RT  
Sbjct: 250 RFFSARSGGCRRSRYLPEIEAVPATFFSLFKGAITASKEELQQNPRSRSARLRIGIRTEA 309

Query: 320 RSIEDDSFVHLPRLPTLSQFRG 341
             +  D  + L     ++ F G
Sbjct: 310 ECLAKD--IKLFDFAEIASFEG 329


>gi|168490031|ref|ZP_02714230.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae SP195]
 gi|182683307|ref|YP_001835054.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae CGSP14]
 gi|221231213|ref|YP_002510365.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae ATCC
           700669]
 gi|298230654|ref|ZP_06964335.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae str.
           Canada MDR_19F]
 gi|262827179|sp|B8ZL51|RSMH_STRPJ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262827224|sp|B2ISQ2|RSMH_STRPS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|182628641|gb|ACB89589.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae CGSP14]
 gi|183571591|gb|EDT92119.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae SP195]
 gi|220673673|emb|CAR68164.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae ATCC
           700669]
 gi|332075180|gb|EGI85650.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           GA17570]
          Length = 316

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 106/319 (33%), Positives = 170/319 (53%), Gaps = 15/319 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M+   H     HV VLL + I +L+  P  + +DAT G  G+S           ++ A D
Sbjct: 1   MTKEFH-----HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFD 55

Query: 66  RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120
           +D  A+   Q+ +  Y E+   +  +  F  LQ  + + GV   DG+ +DLGVSS Q+D 
Sbjct: 56  QDQNAIDNAQKRLAPYIEKGMVTFIKDNFRHLQARLRETGVQEIDGICYDLGVSSPQLDQ 115

Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS++K  PLDMRM+    ++A +VVN  +  DL RI    GE+K + +IA  I + 
Sbjct: 116 RERGFSYKKDAPLDMRMNQDASLTAYEVVNNYDYHDLVRIFFKYGEDKFSKQIARKIEQA 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R+  P +TT +L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   
Sbjct: 176 REVKPIETTTELAEIIKLVKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDM 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L   G + V++FHSLEDRL K+ F   S   +        +      + +++K ++P+ E
Sbjct: 236 LALDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAE 295

Query: 299 DVAFNRRSRSAKLRAGMRT 317
           ++  N RS SAKLR   + 
Sbjct: 296 ELEANNRSHSAKLRVVRKI 314


>gi|167758763|ref|ZP_02430890.1| hypothetical protein CLOSCI_01105 [Clostridium scindens ATCC 35704]
 gi|167663503|gb|EDS07633.1| hypothetical protein CLOSCI_01105 [Clostridium scindens ATCC 35704]
          Length = 311

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 103/307 (33%), Positives = 169/307 (55%), Gaps = 9/307 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
           +H  VLL++ I  LN  P  + +D T G GG++   C       ++I +D+D  A+    
Sbjct: 4   EHKSVLLDETINGLNIKPDGIYVDGTLGGGGHAYEVCTRLGTKGSIIGIDQDAAAIEAAD 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             + D+ E+ ++ ++ +  ++  + + G   VDG++ DLGVSS Q+D  +RGFS+++  P
Sbjct: 64  ARLNDFGEKVTIVRSNYCDMKSRLHELGIDKVDGIILDLGVSSYQLDTAERGFSYREDAP 123

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM     ++A D+VN  +  DL R++   GE+K A  IA  IV +R   P +TT  L
Sbjct: 124 LDMRMDTRQKMTARDIVNDYSEMDLYRVIRDYGEDKFAKNIAKHIVAQRGKGPIETTGQL 183

Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           + +I+  +    +    HPA R+FQA+RI +N E+E L   L    + L  GG L +++F
Sbjct: 184 TEIIRGAIPMKYQKKSGHPAKRTFQAIRIELNRELEVLRDTLDDMIELLNPGGRLCIITF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  F              +    + +    +T+K ++P++ ++  N RS+SA
Sbjct: 244 HSLEDRIVKSAFKKNENPCTCPPDFPVCVCGNVSKGSIVTRKPILPSKYEMEANSRSKSA 303

Query: 310 KLRAGMR 316
           KLR   R
Sbjct: 304 KLRIFER 310


>gi|293402027|ref|ZP_06646166.1| S-adenosyl-methyltransferase MraW [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291304419|gb|EFE45669.1| S-adenosyl-methyltransferase MraW [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 311

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 112/311 (36%), Positives = 171/311 (54%), Gaps = 9/311 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74
           +  H  VLL++ I  L+     + +D T G GG+S    K     ++ A DRD  A+   
Sbjct: 1   MNKHYSVLLQESIEGLHIQHDGIYVDGTLGRGGHSCEILKQIPDGHLYAFDRDASAIEES 60

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
              +    + F+   + FS L++ +   GV   DG+V DLGVSS Q D  +RGFS++   
Sbjct: 61  TPRLLQVADNFTCIHSPFSHLKEELSAYGVNRIDGLVLDLGVSSPQFDEAERGFSYRFDA 120

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  S  ++A ++VN  + +DL +I    GEE  A +IA  I K+R   P +TT +
Sbjct: 121 PLDMRMDQSQALNAYEIVNTWSYQDLVKIFYTYGEETFAKQIARNIEKKRIDKPIRTTFE 180

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I+ ++     N + HPA + FQA+RI VN+E+ EL + L+ A + L   G + V+S
Sbjct: 181 LVDVIKASLPAKVLNKKGHPAKKVFQAIRIAVNDELRELEEVLQEALQMLNPHGRICVIS 240

Query: 250 FHSLEDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           F SLEDR+VK+ F + S      +   ++PS+   A ++ I KK +   +E++  N RS 
Sbjct: 241 FQSLEDRIVKEAFQTASRPKQYDKRIPILPSDMEEAPYKLINKKPITAQEEELMENNRSH 300

Query: 308 SAKLRAGMRTV 318
           SAKLR   R  
Sbjct: 301 SAKLRIIERIR 311


>gi|317058284|ref|ZP_07922769.1| S-adenosyl-methyltransferase mraW [Fusobacterium sp. 3_1_5R]
 gi|313683960|gb|EFS20795.1| S-adenosyl-methyltransferase mraW [Fusobacterium sp. 3_1_5R]
          Length = 318

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 111/320 (34%), Positives = 179/320 (55%), Gaps = 12/320 (3%)

Query: 9   MSSAIHHTIGD--HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIA 63
           M       IG+  H+PVL E+ +  L   P  + +D T G G +S    K       +I+
Sbjct: 1   MGEKDMQEIGNEYHIPVLYEETLDQLVWNPDGIYIDCTLGGGSHSEGILKRLSEKGRLIS 60

Query: 64  LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ--DYVPD-KGVDGVVFDLGVSSMQIDC 120
           +D+D  A++  ++ +  Y +Q+S+FQ  F  +    Y+     VDG++ D+GVSS Q+D 
Sbjct: 61  IDQDANAIAFCKKRLEKYGKQWSVFQNNFENIDIVSYLAGVDKVDGILMDIGVSSTQLDD 120

Query: 121 GDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
           G+RGFS++    LDMRM+    +SA +VVN    +DL RIL   GEE+ A +IA  I + 
Sbjct: 121 GERGFSYRYDAKLDMRMNKEQDLSAYEVVNTYAEQDLVRILFEYGEERHAKKIASFICEN 180

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
           R+  P +TT +L ++I++   +S+    HPA ++FQA+RI VN E+E L + ++ +   L
Sbjct: 181 RKEKPIETTGELVAIIKRA--YSERASKHPAKKTFQAIRIEVNRELEVLEKAIKKSVDLL 238

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQE 298
           K  G L +++FHSLEDRLVK  F   +          +      A  + +TKK ++P+++
Sbjct: 239 KPKGHLAIITFHSLEDRLVKTVFKDLATACKCPPELPVCVCGGKAKVKILTKKPIIPSED 298

Query: 299 DVAFNRRSRSAKLRAGMRTV 318
           ++  N R+ S+KLR   R  
Sbjct: 299 ELGKNNRAHSSKLRVVERLA 318


>gi|82750786|ref|YP_416527.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus RF122]
 gi|123549021|sp|Q2YXE3|RSMH_STAAB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|82656317|emb|CAI80731.1| S-adenosyl-methyltransferase [Staphylococcus aureus RF122]
          Length = 311

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 99/308 (32%), Positives = 161/308 (52%), Gaps = 9/308 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H+ V+L + I  LN     V +D T G  G++            +IA+D+D  A+  
Sbjct: 1   MFHHISVMLNETIDYLNVKENGVYIDCTLGGAGHALYLLNQLNDDGRLIAIDQDQTAIDN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            ++ ++++  + +   + F +L   + D   + VDG+ +DLGVSS Q+D  +RGFS+   
Sbjct: 61  AKKVLKEHLHKVTFVHSNFRELTQILKDLNIEKVDGIYYDLGVSSPQLDIPERGFSYHHD 120

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM  +  ++A ++VN  + + L +I    GEEK + +IA  I   R+  P  TT 
Sbjct: 121 ATLDMRMDQTQELTAYEIVNNWSYEALVKIFYRYGEEKFSKQIARRIEAHREQQPITTTL 180

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I++ +    +    HPA R FQALRI VN+E+      +  A + +K  G + V+
Sbjct: 181 ELVDIIKEGIPAKARRKGGHPAKRVFQALRIAVNDELSAFEDSIEQAIELVKVDGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F          R   +   A+    + I +K +  T+ED+  N R+R
Sbjct: 241 TFHSLEDRLCKQVFQEYEKGPEVPRGLPVIPEAYTPKLKRINRKPITATEEDLDDNNRAR 300

Query: 308 SAKLRAGM 315
           SAKLR   
Sbjct: 301 SAKLRVAE 308


>gi|157151600|ref|YP_001449889.1| S-adenosyl-methyltransferase MraW [Streptococcus gordonii str.
           Challis substr. CH1]
 gi|262826721|sp|A8AVS9|RSMH_STRGC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|157076394|gb|ABV11077.1| S-adenosyl-methyltransferase MraW [Streptococcus gordonii str.
           Challis substr. CH1]
          Length = 316

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 107/319 (33%), Positives = 168/319 (52%), Gaps = 15/319 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M++  H     HV VLL + I  L+  P  V +DAT G  G+S           ++ A D
Sbjct: 1   MTNEFH-----HVTVLLHETIDYLDVKPDGVYVDATLGGAGHSEYLLSKLSPKGHLYAFD 55

Query: 66  RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDC 120
           +D  A+   ++ +  Y E+   +  Q  F  L+  +   GVD   G+ +DLGVSS Q+D 
Sbjct: 56  QDATAIEHAKKRLAPYIEKGMVTFVQDNFRHLKLQLEKLGVDEIDGICYDLGVSSPQLDE 115

Query: 121 GDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS+++  PLDMRM+  +  SA  VVN  +  DL RI    GE+K + +IA  I + 
Sbjct: 116 RERGFSYKQDAPLDMRMNRHADFSAYQVVNDYDYHDLVRIFFKYGEDKFSKQIARKIEQA 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           RQ  P +TT +L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   
Sbjct: 176 RQIKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDL 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L   G + V++FHSLEDRL K+ F   S   +        +      + I++K ++P+ E
Sbjct: 236 LAVDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPDDLKPKLELISRKPILPSAE 295

Query: 299 DVAFNRRSRSAKLRAGMRT 317
           ++  N R+ SAKLR   + 
Sbjct: 296 ELELNNRAHSAKLRVAKKV 314


>gi|303259429|ref|ZP_07345406.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           SP-BS293]
 gi|303261184|ref|ZP_07347133.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           SP14-BS292]
 gi|303263511|ref|ZP_07349434.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae BS397]
 gi|303265804|ref|ZP_07351702.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae BS457]
 gi|303267765|ref|ZP_07353567.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae BS458]
 gi|302638021|gb|EFL68507.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           SP14-BS292]
 gi|302639363|gb|EFL69821.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           SP-BS293]
 gi|302642461|gb|EFL72806.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae BS458]
 gi|302644712|gb|EFL74961.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae BS457]
 gi|302647284|gb|EFL77508.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae BS397]
          Length = 316

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 106/319 (33%), Positives = 172/319 (53%), Gaps = 15/319 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M+   H     HV VLL + I +L+  P  + +DAT G  G+S           ++ A D
Sbjct: 1   MTKEFH-----HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFD 55

Query: 66  RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120
           +D  A+   Q+ +  Y E+   +  +  F  LQ  + + GV   DG+ +DLGVSS Q+D 
Sbjct: 56  QDQNAIDNAQKRLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQ 115

Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS++K  PLDMRM+    ++A +VVN  +  DL RI    GE+K + +IA  I + 
Sbjct: 116 RERGFSYKKDAPLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQV 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R+  P +TT +L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A + 
Sbjct: 176 REVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMEM 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L   G + V++FHSLEDRL K+ F   S   +        +   +  + +++K ++P+ E
Sbjct: 236 LALDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKSKMELVSRKPILPSAE 295

Query: 299 DVAFNRRSRSAKLRAGMRT 317
           ++  N RS SAKLR   + 
Sbjct: 296 ELEANNRSHSAKLRVARKI 314


>gi|154245796|ref|YP_001416754.1| S-adenosyl-methyltransferase MraW [Xanthobacter autotrophicus Py2]
 gi|263504945|sp|A7IGF4|RSMH_XANP2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|154159881|gb|ABS67097.1| S-adenosyl-methyltransferase MraW [Xanthobacter autotrophicus Py2]
          Length = 345

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 136/321 (42%), Positives = 192/321 (59%), Gaps = 5/321 (1%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQE 76
             H+PV+L +V+A L P      +D TFGAGGY+R         V+A+DRDP A++ G +
Sbjct: 17  ARHLPVMLAEVLAHLAPKDAGRYVDGTFGAGGYTRGILNAADCRVLAIDRDPTAIAAGAD 76

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + +   + +L    FS+L     +      DGVV D+GVSSMQ+D  +RGFSF++ GPL
Sbjct: 77  LVAEAAGRLTLVNDRFSRLDAVAQEHDFSPLDGVVLDIGVSSMQLDQAERGFSFRRDGPL 136

Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           DMRM  +G SA+D+V   +   L  ++  LGEE+ +  IA AIVK R  +P   T  L+ 
Sbjct: 137 DMRMGDTGPSAADLVATLDEVQLAHLIWSLGEERHSRPIARAIVKARDESPITRTAQLAE 196

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           ++ + V+  K   +HPATR+FQALRI VN E+ EL Q L +AE+AL  GG L+VV+FHSL
Sbjct: 197 IVSRIVW-QKPGEMHPATRTFQALRIAVNEELSELVQALVAAERALAPGGRLVVVTFHSL 255

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           EDR+VK F ++R+    A RH+  +      F+ + K VV P  ++VA N R+RSAKLRA
Sbjct: 256 EDRIVKTFLSNRAKAPSASRHLPQAEGPEPAFRLVAKGVVEPGPDEVAGNPRARSAKLRA 315

Query: 314 GMRTVERSIEDDSFVHLPRLP 334
             RT   +      + L   P
Sbjct: 316 AERTNAPAHPGGDLMGLLPAP 336


>gi|319892166|ref|YP_004149041.1| rRNA small subunit methyltransferase H [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317161862|gb|ADV05405.1| rRNA small subunit methyltransferase H [Staphylococcus
           pseudintermedius HKU10-03]
 gi|323464735|gb|ADX76888.1| S-adenosyl-methyltransferase MraW [Staphylococcus pseudintermedius
           ED99]
          Length = 311

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 104/308 (33%), Positives = 162/308 (52%), Gaps = 9/308 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H+ VLL++ +  LN     V +D T G  G+S+           +IA+D+D  A++ 
Sbjct: 1   MFHHISVLLKETVDQLNIKEDGVYVDCTLGGAGHSQYLLNQLSDEGRLIAIDQDMTAINH 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E ++    + +     F  L + + +     VDG+++DLGVSS Q+D  +RGFS+Q +
Sbjct: 61  AKEKLQQDLHKVTFVHNNFRNLANILAELNIDKVDGILYDLGVSSPQLDVPERGFSYQHN 120

Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM  +  +SA +VVN  + + L +I    GEEK + +IA  I  RRQ  P +TT 
Sbjct: 121 AKLDMRMDQTQPLSAYEVVNTWSYETLVKIFFRYGEEKFSKQIARKIEARRQQQPIETTF 180

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           DL + I++ +    +    HPA R FQA+RI VN+E+      L  A   +K  G + V+
Sbjct: 181 DLVACIKEGIPAKARRKGGHPAKRVFQAIRIAVNDELAAFEDSLEQAIDHVKVNGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F          R   +   A+    + + +K +V    D+  N R+R
Sbjct: 241 TFHSLEDRLCKQMFQEYEKGPDVPRGLPVLPEAYTPKLKRVNRKPIVADATDLEDNHRAR 300

Query: 308 SAKLRAGM 315
           SAKLR   
Sbjct: 301 SAKLRVAE 308


>gi|126741287|ref|ZP_01756965.1| S-adenosyl-methyltransferase MraW [Roseobacter sp. SK209-2-6]
 gi|126717605|gb|EBA14329.1| S-adenosyl-methyltransferase MraW [Roseobacter sp. SK209-2-6]
          Length = 330

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 154/330 (46%), Positives = 204/330 (61%), Gaps = 6/330 (1%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRD 67
           M++  +   G H+PVLL  ++A + P  G+  LD TFGAGGY+R   + G++ VI +DRD
Sbjct: 1   MTTDQNTANGPHIPVLLRPLLAAVAPVSGR-WLDGTFGAGGYTRGLLEEGASQVIGVDRD 59

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
           P A    Q    +Y ++  L +  FS++ +Y  D  +DGVV DLGVSSMQ+D  +RGFSF
Sbjct: 60  PLAFELAQPWATEYGDRLLLQEGVFSRMDEYAQD--LDGVVLDLGVSSMQLDLAERGFSF 117

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
            + GPLDMRMS SG SA+D+V       L  IL   GEE+ + RIA AIVK R   P  T
Sbjct: 118 MRDGPLDMRMSQSGPSAADLVANLEEAQLADILFQFGEERASRRIAKAIVKARAEEPITT 177

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T  L+S+++  +  SK  + HPATRSFQALRI VN E EEL  GL +AE+ALK GGLL V
Sbjct: 178 TLQLASIVEGCLPRSKPGQSHPATRSFQALRIAVNAEYEELFNGLLAAERALKPGGLLAV 237

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPS-NAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+FHS+EDR+VK+FF  R+GK        P        F+ +T+K V P  E++A N RS
Sbjct: 238 VTFHSVEDRMVKRFFQHRAGKTGRANRYAPELEEVETQFELVTRKAVGPDDEELAENPRS 297

Query: 307 RSAKLRAGMRT-VERSIEDDSFVHLPRLPT 335
           RSA+LR G RT  E        + +P+L  
Sbjct: 298 RSARLRVGRRTMAEPVAISGKELGMPQLKE 327


>gi|329728859|gb|EGG65280.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 311

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 99/308 (32%), Positives = 161/308 (52%), Gaps = 9/308 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H+ V+L + I  LN     V +D T G  G++            ++A+D+D  A+  
Sbjct: 1   MFHHISVMLNETIDYLNVKENGVYIDCTLGGAGHALYLLNQLNDDGRLLAIDQDQTAIDN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E ++D+  + +   + F +L   + D   + VDG+ +DLGVSS Q+D  +RGFS+   
Sbjct: 61  AKEVLKDHLHKVTFVHSNFRELTQILKDLNIEKVDGIYYDLGVSSPQLDIPERGFSYHHD 120

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM  +  ++A ++VN  + + L +I    GEEK + +IA  I   R+  P  TT 
Sbjct: 121 ATLDMRMDQTQELTAYEIVNNWSYEALVKIFYRYGEEKFSKQIARRIEAHREQQPITTTL 180

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I++ +    +    HPA R FQALRI VN+E+      +  A + +K  G + V+
Sbjct: 181 ELVDIIKEGIPAKARRKGGHPAKRVFQALRIAVNDELSAFEDSIEQAIELVKVDGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F          R   +   A+    + + +K +  T+ED+  N R+R
Sbjct: 241 TFHSLEDRLCKQVFQEYEKGPEVPRGLPVIPEAYTPKLKRVNRKPITATEEDLDDNNRAR 300

Query: 308 SAKLRAGM 315
           SAKLR   
Sbjct: 301 SAKLRVAE 308


>gi|256846968|ref|ZP_05552414.1| MraW methylase [Lactobacillus coleohominis 101-4-CHN]
 gi|256715632|gb|EEU30607.1| MraW methylase [Lactobacillus coleohominis 101-4-CHN]
          Length = 313

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 119/310 (38%), Positives = 171/310 (55%), Gaps = 12/310 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76
           DHV VLL + +A LN  P    +DAT G GG+S        G ++ A D+D  A+   QE
Sbjct: 4   DHVTVLLHEAVAGLNVQPDGQYVDATLGGGGHSGLILSKLHGGHLYAFDQDRTAIEYNQE 63

Query: 77  TMRDYKEQ--FSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            + DY  +   +  +  F  LQ   + +    VDG+V+DLGVSS Q D G RGFS+Q   
Sbjct: 64  HLADYLARHQLTFIKDNFKNLQVDLNKLGVTKVDGIVYDLGVSSPQFDDGQRGFSYQHDA 123

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM+    +SA ++VNQ     L +IL   GEEK A  IA AI + R+  P  TT +
Sbjct: 124 KLDMRMNQEQSLSAYEIVNQWPYDRLVKILYRYGEEKFAKSIARAIERHREERPITTTFE 183

Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I++ +    + +  HPA ++FQA+RI VN+E+  L   L  A + L  GG + V++
Sbjct: 184 LVDVIKEAIPARARRHGGHPAKKTFQAIRIAVNDELGVLEASLEQAFEMLNVGGRISVIT 243

Query: 250 FHSLEDRLVKKFFASRS--GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           F SLEDRLVK  F  R+    V A   +IP    P  F+ + +K + P+ +++A N R+ 
Sbjct: 244 FQSLEDRLVKTMFRERTTLKDVPAGLPVIPKEQQP-DFKLVNRKAIEPSPQELASNHRAH 302

Query: 308 SAKLRAGMRT 317
           SA LR   + 
Sbjct: 303 SAHLRVIEKV 312


>gi|326803777|ref|YP_004321595.1| S-adenosyl-methyltransferase MraW [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326650961|gb|AEA01144.1| S-adenosyl-methyltransferase MraW [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 318

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 116/323 (35%), Positives = 176/323 (54%), Gaps = 17/323 (5%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M+   H     H+ VLL++ +  LN       +D T G GG++            + A D
Sbjct: 1   MTETFH-----HITVLLKETVDDLNVKEDGSYVDCTLGGGGHTSYLLSKLSAKGRLYAFD 55

Query: 66  RDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120
           +D  A++  +E   D     Q +L  A F+QL++ +  +GV   DG+++DLGVSS Q+D 
Sbjct: 56  QDIQAINHAKERFADAIAAGQLTLIHANFAQLEEQLAQRGVKQVDGILYDLGVSSPQLDD 115

Query: 121 GDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS+++  PLDMRM  S  ++A ++VN  +  DL RIL   GEEK A  IA  I  R
Sbjct: 116 RERGFSYKQDAPLDMRMDQSQTLTAKEIVNDWSYVDLVRILKRYGEEKFAKAIARNIENR 175

Query: 180 RQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           RQ A    T +L  +I++ +   ++    HPA RSFQA+RI VN+E+  +   L  A + 
Sbjct: 176 RQKAAITRTSELVEIIKEAIPAPARRKGGHPAKRSFQAIRIAVNDELGAIESSLSQALQL 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPT 296
           +K  G +  +SF SLEDR+VK  F   S    + +   ++ S    A F+ + KK + P+
Sbjct: 236 IKVEGRIAAISFQSLEDRIVKVMFKEASTVDNLPSQLPLLESQLPQAKFRLVNKKPIYPS 295

Query: 297 QEDVAFNRRSRSAKLRAGMRTVE 319
           QE++  N R++SAKLR   R  E
Sbjct: 296 QEELDKNSRAQSAKLRVIERVSE 318


>gi|332076775|gb|EGI87237.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           GA17545]
          Length = 316

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 106/319 (33%), Positives = 170/319 (53%), Gaps = 15/319 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M+   H     HV VLL + I +L+  P  + +DAT G  G+S           ++ A D
Sbjct: 1   MTKEFH-----HVTVLLHETIDMLDVKPEGIYVDATLGGAGHSEYLLSKLSEKGHLYAFD 55

Query: 66  RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120
           +D  A+   Q+ +  Y E+   +  +  F  LQ  + + GV   DG+ +DLGVSS Q+D 
Sbjct: 56  QDQNAIDNAQKRLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQ 115

Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS++K  PLDMRM+    ++A +VVN  +  DL RI    GE+K + +IA  I + 
Sbjct: 116 RERGFSYKKDAPLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQA 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R+  P +TT +L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   
Sbjct: 176 REVKPIETTTELAEIIKLVKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDM 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L   G + V++FHSLEDRL K+ F   S   +        +      + +++K ++P+ E
Sbjct: 236 LALDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAE 295

Query: 299 DVAFNRRSRSAKLRAGMRT 317
           ++  N RS SAKLR   + 
Sbjct: 296 ELEANNRSHSAKLRVARKI 314


>gi|254518688|ref|ZP_05130744.1| S-adenosyl-methyltransferase MraW [Clostridium sp. 7_2_43FAA]
 gi|226912437|gb|EEH97638.1| S-adenosyl-methyltransferase MraW [Clostridium sp. 7_2_43FAA]
          Length = 310

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 112/308 (36%), Positives = 171/308 (55%), Gaps = 10/308 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
            HV VLL + I  LN     + +D T G GG+S    K  S    +I +D+D  A+    
Sbjct: 4   KHVSVLLNECIEGLNIKEDGIYVDGTLGGGGHSLEILKRLSKDGTLIGVDQDKDALKAAG 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E ++D+        + F  +   + +   K +DG++ DLGVSS Q+D GDRGFS+ +  P
Sbjct: 64  ERLQDFA-NVKFVHSNFYNIDSVLNNLEIKKIDGMLMDLGVSSYQLDEGDRGFSYMQDAP 122

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+  S +SA +V+N+   +++ RI+   GEEK A RIA  IV+ R++ P +TT +L
Sbjct: 123 LDMRMNRESSLSAYEVINEYEEEEIYRIIRDYGEEKFAKRIARFIVENRENKPIETTLEL 182

Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+  +    +    HPA R+FQA+RI VN+E+  L + +      L  GG + +++F
Sbjct: 183 VEIIKAAIPAKARREGPHPAKRTFQAIRIEVNSELSILNKAIEDGVNRLNKGGRMAIITF 242

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  F   +      +   I      A  + I++K + P++E+V  N RSRSA
Sbjct: 243 HSLEDRIVKLKFKELATSCTCPKEFPICVCGGKAKVKLISRKAIEPSKEEVEENPRSRSA 302

Query: 310 KLRAGMRT 317
           KLR   R 
Sbjct: 303 KLRVIERI 310


>gi|313114876|ref|ZP_07800375.1| S-adenosyl-methyltransferase MraW [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310622826|gb|EFQ06282.1| S-adenosyl-methyltransferase MraW [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 321

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 113/316 (35%), Positives = 171/316 (54%), Gaps = 12/316 (3%)

Query: 11  SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-----KMGSNVIALD 65
           +A      +H+PVLL + +  L+  P    LD T G  G+SR        + G  +I+LD
Sbjct: 7   AAFDPASFEHIPVLLNECLEGLSIDPAGTYLDGTAGGAGHSRQIALRLDAEKGGRLISLD 66

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGD 122
           +DP AV   +  +       ++ Q  F      +   G+D   G + DLGVSS Q+D   
Sbjct: 67  QDPDAVQTARARLAGLPA--TVVQINFRYAGQALESLGIDKVNGALLDLGVSSHQLDDAA 124

Query: 123 RGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           RGFS++   PLDMRMS  G +A+D+VN  + ++L RIL   GEE  A +IA  IV+ R++
Sbjct: 125 RGFSYRADAPLDMRMSQQGETAADLVNTESREELARILRDYGEEPFAWQIAGRIVEAREN 184

Query: 183 APFQTTQDLSSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
           +P +TT  L+ ++   +  ++  +  +P+ R+FQALRI VN+E++ L +GL +    L  
Sbjct: 185 SPIETTLQLADIVASAMPPAERRKNKNPSRRTFQALRIAVNHELDALEEGLDTIFDHLAP 244

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDV 300
           GG L V++FHSLEDRLVK  F   S          +      A  + IT+K +    +++
Sbjct: 245 GGRLCVITFHSLEDRLVKNKFRRWSTACTCPPEFPVCVCGGKAKAKLITRKPIEANSQEL 304

Query: 301 AFNRRSRSAKLRAGMR 316
             NRRSRSA LR   +
Sbjct: 305 EENRRSRSAHLRVLEK 320


>gi|256850925|ref|ZP_05556314.1| MraW methylase [Lactobacillus jensenii 27-2-CHN]
 gi|260661139|ref|ZP_05862053.1| MraW methylase [Lactobacillus jensenii 115-3-CHN]
 gi|282934162|ref|ZP_06339440.1| S-adenosyl-methyltransferase MraW [Lactobacillus jensenii 208-1]
 gi|297205805|ref|ZP_06923200.1| S-adenosyl-methyltransferase MraW [Lactobacillus jensenii JV-V16]
 gi|256615987|gb|EEU21175.1| MraW methylase [Lactobacillus jensenii 27-2-CHN]
 gi|260548076|gb|EEX24052.1| MraW methylase [Lactobacillus jensenii 115-3-CHN]
 gi|281301776|gb|EFA94042.1| S-adenosyl-methyltransferase MraW [Lactobacillus jensenii 208-1]
 gi|297148931|gb|EFH29229.1| S-adenosyl-methyltransferase MraW [Lactobacillus jensenii JV-V16]
          Length = 317

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 108/314 (34%), Positives = 169/314 (53%), Gaps = 13/314 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSC 73
           T   H  VLL + I  LN     + +DATFG GG++R      +   ++  D+D +A++ 
Sbjct: 3   TNFKHTSVLLRETIDNLNVKDEGLYVDATFGGGGHARYLLSKLNTGVLVGFDQDNYAINA 62

Query: 74  GQETMRDY-----KEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRG 124
            ++   +Y     + Q  +    FS L D +       G+DG+ +DLGVSS Q D  DRG
Sbjct: 63  AKDNFSEYLSGNHQPQLIMVHDNFSHLTDNLNKLGIKDGIDGIYYDLGVSSPQFDQPDRG 122

Query: 125 FSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           FS++    LDMRM+    + A  VVN  +   L  +L   G+EK + +IA  IV+RRQ  
Sbjct: 123 FSYRFDARLDMRMNQEQELDAYQVVNSYSQSQLADVLYQYGDEKFSRQIARKIVQRRQQK 182

Query: 184 PFQTTQDLSSLIQKTVYFSKNN-RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           P +TT +L  LI++ +  +K     HPA +SFQA+R+ VN+E++ L   L+ A + L+ G
Sbjct: 183 PIETTFELVELIKEAIPAAKRRTGGHPAKKSFQAIRVEVNHELDSLKASLQEAIELLRPG 242

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G + V++F S ED++VKK F   S   +     I  +      + + +K ++ T  ++A 
Sbjct: 243 GRISVITFQSHEDKIVKKIFKENSEVDVPRGIPIIPDNLKPKLKLVNRKPILATASELAN 302

Query: 303 NRRSRSAKLRAGMR 316
           N RS SAKLR   +
Sbjct: 303 NNRSHSAKLRVAEK 316


>gi|148994362|ref|ZP_01823605.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           SP9-BS68]
 gi|147927293|gb|EDK78326.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           SP9-BS68]
          Length = 316

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 105/319 (32%), Positives = 169/319 (52%), Gaps = 15/319 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M+   H     HV VLL + I +L+  P  + +DAT G  G+S           ++ A D
Sbjct: 1   MTKEFH-----HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFD 55

Query: 66  RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120
           +D  A+   Q+ +  Y E+   +  +  F  LQ  + + GV   DG+ +DLGVSS Q+D 
Sbjct: 56  QDQNAIDNAQQRLAPYIEKGMVTFIKDNFRHLQVRLREAGVQEIDGICYDLGVSSPQLDQ 115

Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS++K  PLDMRM+    ++A +VVN  +  DL RI    GE+K + +IA  I + 
Sbjct: 116 RERGFSYKKDAPLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQA 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R   P +TT +L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ +   
Sbjct: 176 RDVKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQSMDM 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L   G + V++FHSLEDRL K+ F   S   +        +      + +++K ++P+ E
Sbjct: 236 LTLDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAE 295

Query: 299 DVAFNRRSRSAKLRAGMRT 317
           ++  N RS SAKLR   + 
Sbjct: 296 ELEANNRSHSAKLRVARKI 314


>gi|83942761|ref|ZP_00955222.1| S-adenosyl-methyltransferase MraW [Sulfitobacter sp. EE-36]
 gi|83846854|gb|EAP84730.1| S-adenosyl-methyltransferase MraW [Sulfitobacter sp. EE-36]
          Length = 330

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 148/332 (44%), Positives = 202/332 (60%), Gaps = 6/332 (1%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRD 67
           MS         H PVLL  ++A + P  G+  LD TFGAGGY+R     G+  V+A+DRD
Sbjct: 1   MSGPSDTPSAPHTPVLLRPLLAAVAPVSGR-WLDGTFGAGGYTRGLLDAGAAQVVAVDRD 59

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
           P A    Q    DY ++  + +  FS++ DY  D  +DG+V DLGVSSMQ+D  +RGFSF
Sbjct: 60  PLAFEMAQAWAGDYGDRIVMQRGVFSKMDDYAQD--LDGIVLDLGVSSMQLDLAERGFSF 117

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
            + GPLDMRMS  G SA+D+VN+A  + +  IL   GEE+ + RIA AIV+ R+ AP  T
Sbjct: 118 MRDGPLDMRMSQDGPSAADIVNEAEEEVIANILFQYGEERASRRIAKAIVRAREEAPITT 177

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T  L+ L++  +  SK  + HPATRSFQALRI VNNE  EL  GL +AE+ALK GG L V
Sbjct: 178 TLALAGLVESCLPRSKPGQSHPATRSFQALRIAVNNEYGELFNGLMAAERALKPGGQLAV 237

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPS-NAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+FHS+EDR+VK+F  +R+G         P   A    F+ + +K + P  +++  N RS
Sbjct: 238 VTFHSVEDRMVKRFLTARAGAGGNANRFAPEIEAPEPQFKILKRKAIGPDAQELEENPRS 297

Query: 307 RSAKLRAGMRTVERSIE-DDSFVHLPRLPTLS 337
           RSAKLR  +RT   +   D   + +P +  L+
Sbjct: 298 RSAKLRVAIRTDAPAGSIDAKALGMPMVRGLT 329


>gi|331701055|ref|YP_004398014.1| ribosomal RNA small subunit methyltransferase H [Lactobacillus
           buchneri NRRL B-30929]
 gi|329128398|gb|AEB72951.1| Ribosomal RNA small subunit methyltransferase H [Lactobacillus
           buchneri NRRL B-30929]
          Length = 315

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 110/312 (35%), Positives = 164/312 (52%), Gaps = 10/312 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73
           +   HV VLL + +  LN  P    +DAT G GG++    +     ++ + D+D  A++ 
Sbjct: 2   SEFKHVTVLLNEAVKGLNINPDGTYVDATLGGGGHTTKILEQLTNGHLYSFDQDEEAIAY 61

Query: 74  GQETMRDY--KEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQ 128
            ++ + +Y    + +L    F  L+  + +    G+DG+V+DLGVSS Q D   RGFS++
Sbjct: 62  NRQHLAEYIEAGKLTLIHDNFRHLKSALQNVDVSGIDGIVYDLGVSSPQFDEAGRGFSYR 121

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
               LDMRM   + I A  +VN+   + L RI    GEEK A  IA  I   R+  P  T
Sbjct: 122 FDARLDMRMDQDNPIDAWKIVNEWPYEKLVRIFYRYGEEKFAKSIARRIETVRREHPIDT 181

Query: 188 TQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T DL  +I++ +  + + +  HPA + FQA+RI VN+E+  L   L  A   L   G + 
Sbjct: 182 TNDLVEVIKEGIPAAARRHGGHPAKKVFQAVRIAVNDELSALEDSLEQALDLLNVNGRIS 241

Query: 247 VVSFHSLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           V++F SLEDRLVK  F  + S   +     I        F+SIT+K +VPT+ ++  N R
Sbjct: 242 VITFQSLEDRLVKTMFKEKTSLPELPPNLPIIPEGIKPKFKSITRKPIVPTEAELEENHR 301

Query: 306 SRSAKLRAGMRT 317
           S SAKLR   R 
Sbjct: 302 SHSAKLRIIERI 313


>gi|167745322|ref|ZP_02417449.1| hypothetical protein ANACAC_00013 [Anaerostipes caccae DSM 14662]
 gi|167655043|gb|EDR99172.1| hypothetical protein ANACAC_00013 [Anaerostipes caccae DSM 14662]
          Length = 311

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 101/307 (32%), Positives = 165/307 (53%), Gaps = 9/307 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
           +H  VLL++ I  L   P  + +D T G GG++             I +D+D  A+    
Sbjct: 4   EHASVLLDETIRELKIKPDGIYVDGTLGGGGHAFHVLNRLSEKGRYIGIDQDEDAIRAST 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + +  ++++ ++ +  +  +   + D G   VDG++ DLGVSS Q+D  DRGF++++  P
Sbjct: 64  KRLAPFQDKVTIVRDNYVNMPKVLKDLGISRVDGILLDLGVSSFQLDEKDRGFTYREDVP 123

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM      SA D+VN  + ++L  I+   GE+K A  IA  I   R+ AP +TT  L
Sbjct: 124 LDMRMDQRQTFSARDIVNGYSEQELFHIIRDYGEDKFAKNIAKHIAAEREKAPIETTGQL 183

Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+  +    +    HPA R+FQA+RI  N E+E L   L    + L   G L +++F
Sbjct: 184 IEVIKHAIPMKVRAVGGHPAKRTFQAIRIECNRELEVLKTSLDQMIELLNPEGRLCIITF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK+ F              I +  + +  + IT+K ++PT+E++  N+R++S+
Sbjct: 244 HSLEDRIVKRAFRKNENPCTCPPNFPICTCGNESKGKVITRKPIIPTEEELMRNKRAKSS 303

Query: 310 KLRAGMR 316
           KLR   R
Sbjct: 304 KLRVFER 310


>gi|269926721|ref|YP_003323344.1| S-adenosyl-methyltransferase MraW [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269790381|gb|ACZ42522.1| S-adenosyl-methyltransferase MraW [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 304

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 123/306 (40%), Positives = 184/306 (60%), Gaps = 11/306 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            H  VLL++ IALL+  P    +DAT GAGG++    +       V+ LD DP A+   Q
Sbjct: 1   MHTSVLLDESIALLDIHPNGKYIDATLGAGGHAEKMLERSSPSGRVLGLDADPRAIELAQ 60

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + +  +  ++ L    F  ++    +      DGV+FDLG+SSMQ+D    GFSF++  P
Sbjct: 61  QRLGRFVGRYVLVHTNFRYIEQAATEHDFNPCDGVLFDLGISSMQVDAWAAGFSFRRDEP 120

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMR    SG +A+D++ +++ ++L RI+   GEE ++ +IA AI   R+  P  TT  L
Sbjct: 121 LDMRFDPTSGKTAADIIRESSEQELARIIWEYGEEPKSRQIARAIKSSRE--PIITTVQL 178

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
              ++  VY  K +RIHPATR+FQALRI VN+E++ L +GL  A + L+ GG L+V+SFH
Sbjct: 179 VQAVES-VYKGKRSRIHPATRTFQALRIAVNDELDALQEGLAGALRVLRVGGRLVVISFH 237

Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK F   RS   +     ++ +  H    + +T+K +VP++E+V  N RSRSAK
Sbjct: 238 SLEDRIVKHFMRERSKGCICPPEQLVCTCNHRPEIKVLTRKPIVPSEEEVKVNPRSRSAK 297

Query: 311 LRAGMR 316
           LRA  +
Sbjct: 298 LRAAEK 303


>gi|262282191|ref|ZP_06059960.1| S-adenosyl-methyltransferase MraW [Streptococcus sp. 2_1_36FAA]
 gi|262262645|gb|EEY81342.1| S-adenosyl-methyltransferase MraW [Streptococcus sp. 2_1_36FAA]
          Length = 316

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 107/319 (33%), Positives = 168/319 (52%), Gaps = 15/319 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M++  H     HV VLL + I  L+  P  V +DAT G  G+S           ++ A D
Sbjct: 1   MTNEFH-----HVTVLLHETIDYLDVKPDGVYVDATLGGAGHSEYLLSKLSPKGHLYAFD 55

Query: 66  RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDC 120
           +D  A+   ++ +  Y E+   +  Q  F  L+  +   GVD   G+ +DLGVSS Q+D 
Sbjct: 56  QDATAIEHAKKRLAPYIEKGMVTFVQDNFRHLKLQLKKLGVDEIDGICYDLGVSSPQLDE 115

Query: 121 GDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS+++  PLDMRM+  +  SA  VVN  +  DL RI    GE+K + +IA  I + 
Sbjct: 116 RERGFSYKQDAPLDMRMNRHADFSAYQVVNDYDYHDLVRIFFKYGEDKFSKQIARKIEQA 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           RQ  P +TT +L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   
Sbjct: 176 RQIKPIETTTELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDM 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L   G + V++FHSLEDRL K+ F   S   +        +      + I++K ++P+ E
Sbjct: 236 LAVDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPDDLKPKLELISRKPILPSAE 295

Query: 299 DVAFNRRSRSAKLRAGMRT 317
           ++  N R+ SAKLR   + 
Sbjct: 296 ELELNNRAHSAKLRVAKKV 314


>gi|165975468|ref|YP_001651061.1| S-adenosyl-methyltransferase MraW [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|263446591|sp|B0BRG9|RSMH_ACTPJ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|165875569|gb|ABY68617.1| S-adenosyl-methyltransferase [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
          Length = 313

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 118/316 (37%), Positives = 175/316 (55%), Gaps = 16/316 (5%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69
           ++ T+  H+ VLL + +  L   P  + +D TFG GG+SR           +IA DRDP 
Sbjct: 1   MNDTVHKHITVLLHEAVDGLAIKPNGIYIDGTFGRGGHSRLILSKLSEQGRLIATDRDPR 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGF 125
           A++           +F +    FS + D     G    +DG++ DLGVSS Q+D  +RGF
Sbjct: 61  AIAEANTI---DDTRFQIVHTAFSAIPDVCEQLGLTGKIDGILLDLGVSSPQLDDAERGF 117

Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ--S 182
           SF + GPLDMRM  + G+SA++ + Q +  DL  +L   GEE+ A RIA A+V   +  +
Sbjct: 118 SFMRDGPLDMRMDTTKGLSAAEWLAQVSADDLAWVLKTFGEERFAKRIAQAVVSYNKSVT 177

Query: 183 APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
                T  L+ +I   V F K+   HPATRSFQA+RIF+N+E++EL + L+SA   L   
Sbjct: 178 DKISRTLQLAQIIADAVPF-KDKHKHPATRSFQAIRIFINSELDELEKALQSALSVLAPE 236

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300
           G L ++SFHSLEDR+VK+F    S    V     ++ S  +  +   I  K ++P++ ++
Sbjct: 237 GRLSIISFHSLEDRMVKQFMKKNSKGMDVPKGLPILESELNKNIPLKIIGKAIMPSEAEI 296

Query: 301 AFNRRSRSAKLRAGMR 316
             N RSRSA LR   +
Sbjct: 297 EANPRSRSAVLRIAEK 312


>gi|284048645|ref|YP_003398984.1| S-adenosyl-methyltransferase MraW [Acidaminococcus fermentans DSM
           20731]
 gi|283952866|gb|ADB47669.1| S-adenosyl-methyltransferase MraW [Acidaminococcus fermentans DSM
           20731]
          Length = 309

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 104/307 (33%), Positives = 165/307 (53%), Gaps = 11/307 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76
           H  VLLE+ +  +   P  + +D T G GG+S            +I +D+D  A++   E
Sbjct: 5   HKSVLLEESVQWVVTDPKGIYVDCTLGGGGHSHRITELLDPEGLLIGIDQDEDAIAAATE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++D + Q  +    F  L   +   G   VDG++FDLGVSS Q+D  +RGFS+   GPL
Sbjct: 65  RLKDARCQVKIVHNNFRNLDQILDQLGIPQVDGILFDLGVSSYQLDTPERGFSYMHDGPL 124

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     ++A  VVN+    DL  ++   GEE+ A RIA  IV  R+  P +TT +L 
Sbjct: 125 DMRMDQEASLTAEQVVNRYKEDDLAGLIYKYGEERWAKRIAQFIVAARKEHPIRTTGELV 184

Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  +   ++ +  HPA R+FQA+RI VN+E++ L   + +A   LK+GG + V++FH
Sbjct: 185 HIIKAAIPKGARQDGPHPAKRTFQAIRIEVNDELKILDATMEAAVHHLKSGGHIGVITFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR++K+ F       +      +         + +  K   P + ++A N R+RSA+
Sbjct: 245 SLEDRIIKQAFKRLQRGCICPPELPVCVCGRKPELKKL--KEFTPGEAELAENPRARSAR 302

Query: 311 LRAGMRT 317
           LR  ++ 
Sbjct: 303 LRGAVKI 309


>gi|99081855|ref|YP_614009.1| methyltransferase [Ruegeria sp. TM1040]
 gi|123378785|sp|Q1GF19|RSMH_SILST RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|99038135|gb|ABF64747.1| methyltransferase [Ruegeria sp. TM1040]
          Length = 329

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 150/330 (45%), Positives = 205/330 (62%), Gaps = 6/330 (1%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRD 67
           M+       G H+PVLL+ ++A + P  G+  LD TFGAGGY++     G++ VI +DRD
Sbjct: 1   MTDRTAAPSGPHIPVLLKPLLAAVAPVTGR-WLDGTFGAGGYTKGLLAAGADQVIGVDRD 59

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
           P A    Q    +Y ++  L Q  FS++ +Y  +  +DGVV DLGVSSMQ+D  +RGFSF
Sbjct: 60  PLAFEMAQPWAAEYGDRLVLQQGVFSRMDEYAQE--LDGVVLDLGVSSMQLDLAERGFSF 117

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
            K GPLDMRMS  G SA+D+V + +   L  +L   GEE+ + RIA AIVK R   P  T
Sbjct: 118 MKEGPLDMRMSQDGPSAADLVAELSEVQLADVLYSFGEERASRRIAKAIVKERAQEPITT 177

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T  L+ +I+  +   K  + HPATRSFQALRI VN E EEL  GL +AE+ALK GGLL V
Sbjct: 178 TLRLAEIIEGCLPRPKPGQSHPATRSFQALRIAVNGEYEELMGGLLAAERALKPGGLLAV 237

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPS-NAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+FHS+EDR+VK+FF  R+ K        P+    P+ F+ +T+K V P ++++A N RS
Sbjct: 238 VTFHSVEDRMVKRFFQHRANKTGNANRYAPAMEEQPSQFELVTRKAVGPDKDELAQNPRS 297

Query: 307 RSAKLRAGMRTVERSIEDDSF-VHLPRLPT 335
           RSA LR G RT    +E  +  + +P+L  
Sbjct: 298 RSALLRVGRRTDAAPVEITAKELSMPQLKE 327


>gi|237738955|ref|ZP_04569436.1| S-adenosyl-methyltransferase mraW [Fusobacterium sp. 2_1_31]
 gi|229423555|gb|EEO38602.1| S-adenosyl-methyltransferase mraW [Fusobacterium sp. 2_1_31]
          Length = 320

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 105/324 (32%), Positives = 175/324 (54%), Gaps = 13/324 (4%)

Query: 4   KSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--- 60
           K+   M    +     H+PVL  + +  L   P  V +D T G G +S    +  S+   
Sbjct: 2   KNGDFMEKIGND---YHIPVLYYETLDNLVINPDGVYIDCTLGGGSHSEGILERLSDKGL 58

Query: 61  VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQ 117
           ++++D+D  A+   ++ +  Y  ++ + +  F  +       G   VDG++ D+GVSS Q
Sbjct: 59  LLSIDQDSNAIEYSKKRLEKYASKWKVLKGNFENIDTLAYMAGIDKVDGILMDIGVSSKQ 118

Query: 118 IDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
           +D  +RGFS++    LDMRM+    +SA DVVN  + ++L+RI+   GEE+ A +IA  I
Sbjct: 119 LDEAERGFSYRYDVKLDMRMNTDQKLSAYDVVNTYSEEELSRIIFEYGEERFARKIAKLI 178

Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236
            + R+  P  TT +L +LI++     +    HPA ++FQA+RI VN E+E L   +  A 
Sbjct: 179 CENRKIKPITTTFELVALIRRAYP--ERASKHPAKKTFQAIRIEVNRELEVLENAMSKAV 236

Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVP 295
           + LK GG L +++FHSLEDR+VK  F   +      +   I        F+ IT+K ++P
Sbjct: 237 ELLKVGGRLGIITFHSLEDRIVKNKFKDLATACKCPKDIPICMCGGVKKFEIITRKPIIP 296

Query: 296 TQEDVAFNRRSRSAKLRAGMRTVE 319
            ++++  N R+ S+KLR   R ++
Sbjct: 297 VEDELKNNNRAHSSKLRILERILD 320


>gi|303250489|ref|ZP_07336686.1| S-adenosyl-methyltransferase MraW [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|303251832|ref|ZP_07338003.1| S-adenosyl-methyltransferase MraW [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307249133|ref|ZP_07531140.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
 gi|307249209|ref|ZP_07531206.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|307251531|ref|ZP_07533438.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|307260461|ref|ZP_07542156.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
 gi|302649262|gb|EFL79447.1| S-adenosyl-methyltransferase MraW [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|302650477|gb|EFL80636.1| S-adenosyl-methyltransferase MraW [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306854421|gb|EFM86617.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
 gi|306858733|gb|EFM90792.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|306860995|gb|EFM93001.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|306869864|gb|EFN01646.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
          Length = 313

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 120/316 (37%), Positives = 176/316 (55%), Gaps = 16/316 (5%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69
           ++ T+  H+ VLL + +  L   P  + +D TFG GG+SR           +IA DRDP 
Sbjct: 1   MNDTVHKHITVLLHEAVDGLAIKPNGIYIDGTFGRGGHSRLILSKLSEQGRLIATDRDPR 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGF 125
           A++           +F +    FS + D     G    +DG++ DLGVSS Q+D  +RGF
Sbjct: 61  AIAEANTI---DDTRFQIVHTAFSAIPDVCEQLGLTGKIDGILLDLGVSSPQLDDAERGF 117

Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA- 183
           SF + GPLDMRM  + G+SA++ + Q +  DL  +L   GEE+ A RIA A+V   +SA 
Sbjct: 118 SFMRDGPLDMRMDTTKGLSAAEWLAQVSADDLAWVLKTFGEERFAKRIAQAVVSYNKSAT 177

Query: 184 -PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
                T  L+ +I   V F K+   HPATRSFQA+RIF+N+E++EL + L+SA   L   
Sbjct: 178 DKISRTLQLAQIIADAVPF-KDKHKHPATRSFQAIRIFINSELDELEKALQSALSVLAPE 236

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300
           G L ++SFHSLEDR+VK+F    S    V     ++ S  +  +   I  K ++P++ ++
Sbjct: 237 GRLSIISFHSLEDRMVKQFMKKNSKGMDVPKGLPILESELNKNIPLKIIGKAIMPSEAEI 296

Query: 301 AFNRRSRSAKLRAGMR 316
             N RSRSA LR   +
Sbjct: 297 EANPRSRSAVLRIAEK 312


>gi|25010349|ref|NP_734744.1| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae NEM316]
 gi|30173049|sp|Q8E782|RSMH_STRA3 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|23094701|emb|CAD45920.1| unknown [Streptococcus agalactiae NEM316]
 gi|319744247|gb|EFV96612.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Streptococcus agalactiae ATCC 13813]
          Length = 315

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 102/320 (31%), Positives = 167/320 (52%), Gaps = 15/320 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           M++  H     H+ VLL + + +L+  P  + +DAT G  G+S           ++ A D
Sbjct: 1   MTNDFH-----HITVLLHETVDMLDIKPDGIYVDATLGGAGHSEYLLSQLGPDGHLYAFD 55

Query: 66  RDPFAVSCGQETMRDYKE--QFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120
           +D  A+      ++ Y +  Q +  +  F  L   +   GV   +G+ +DLGVSS Q+D 
Sbjct: 56  QDQKAIDNAHIRLKKYVDTGQVTFIKDNFRNLSSNLKALGVSEINGICYDLGVSSPQLDE 115

Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS+++  PLDMRM+    ++A DVVN  +  DL RI    GE+K + +IA  I + 
Sbjct: 116 RERGFSYKQDAPLDMRMNREQSLTAYDVVNTYSYHDLVRIFFKYGEDKFSKQIARKIEQV 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R   P  TT +L+ +I+ +    +   + HPA + FQA+RI VN+E+    + ++ A   
Sbjct: 176 RAEKPISTTTELAEIIKSSKSAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDL 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L   G + V++FHSLEDRL K+ F   S   +        +      + + +K ++P+QE
Sbjct: 236 LAVDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLQPKMELVNRKPILPSQE 295

Query: 299 DVAFNRRSRSAKLRAGMRTV 318
           ++  N R+ SAKLR   R  
Sbjct: 296 ELEANNRAHSAKLRVARRIR 315


>gi|260881846|ref|ZP_05405354.2| S-adenosyl-methyltransferase MraW [Mitsuokella multacida DSM 20544]
 gi|260847818|gb|EEX67825.1| S-adenosyl-methyltransferase MraW [Mitsuokella multacida DSM 20544]
          Length = 330

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 111/321 (34%), Positives = 169/321 (52%), Gaps = 11/321 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            H+ V+LE+ +  L      + +D T G  G+S    ++      +I +D+D  A+   +
Sbjct: 9   HHISVMLEETVKGLVTNKEGIYVDCTLGGAGHSHRIAELLSPKGRIIGIDQDEEAIEAAK 68

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E ++D K +  +  + FS L++ +  +G   VDGVVFDLGVSS QID  +RGFS+    P
Sbjct: 69  ERLKDVKCRVDIVHSNFSHLEEILEAQGAPLVDGVVFDLGVSSHQIDTAERGFSYMHDAP 128

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM      SA DVVN  + K+L RI    GEE+   RIA  IVK R   P + T +L
Sbjct: 129 LDMRMDPEAKFSAYDVVNTYSEKELDRIFHDYGEERWGRRIAQFIVKERMKKPIERTGEL 188

Query: 192 SSLIQKTVYFSKNNR--IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
             +I K V  +       HPA R FQA+RI VN+E+  L +  R+A   LK GG + +++
Sbjct: 189 VDIICKAVPKAVRQAANGHPAKRIFQAIRIEVNDELGILEKAFRTAVHHLKPGGRIAIIT 248

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+ K+     +   +      +    H    + +  K    T +++A N RS+S
Sbjct: 249 FHSLEDRIAKQTLKEMARGCICPPELPVCVCHHKPEIRLL-GKPKQATADELAHNSRSKS 307

Query: 309 AKLRAGMRTVERSIEDDSFVH 329
           AKLR   +    + ++++   
Sbjct: 308 AKLRIAEKLATDNNQEETRKG 328


>gi|262066020|ref|ZP_06025632.1| S-adenosyl-methyltransferase MraW [Fusobacterium periodonticum ATCC
           33693]
 gi|291380270|gb|EFE87788.1| S-adenosyl-methyltransferase MraW [Fusobacterium periodonticum ATCC
           33693]
          Length = 314

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 103/308 (33%), Positives = 172/308 (55%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+PVL  + +  L   P  V +D T G G +S    +  S+   ++++D+D  A+   ++
Sbjct: 9   HIPVLYYETLDNLVINPDGVYIDCTLGGGSHSEGILERLSDKGLLLSIDQDSNAIEYSKK 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  Y  ++ + +  F  +       G   VDG++ D+GVSS Q+D  +RGFS++    L
Sbjct: 69  RLEKYASKWKVLKGNFENIDTLAYMAGIDKVDGILMDIGVSSKQLDEAERGFSYRYDVKL 128

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+    +SA DVVN  + ++L+RI+   GEE+ A +IA  I + R++ P  TT +L 
Sbjct: 129 DMRMNTEQKLSAYDVVNTYSEEELSRIIFEYGEERFARKIAKLICENRKTKPITTTFELV 188

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +LI++     +    HPA ++FQA+RI VN E+E L   +  A + LK GG L +++FHS
Sbjct: 189 ALIRRAYP--ERASKHPAKKTFQAIRIEVNRELEVLENAMSKAVELLKVGGRLGIITFHS 246

Query: 253 LEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK  F   +      +   I        F+ IT+K ++P ++++  N R+ S+KL
Sbjct: 247 LEDRIVKNKFKDLATACKCPKDIPICICGGVKKFEVITRKPIIPVEDELKNNNRAHSSKL 306

Query: 312 RAGMRTVE 319
           R   R ++
Sbjct: 307 RILERILD 314


>gi|83954000|ref|ZP_00962721.1| S-adenosyl-methyltransferase MraW [Sulfitobacter sp. NAS-14.1]
 gi|83841945|gb|EAP81114.1| S-adenosyl-methyltransferase MraW [Sulfitobacter sp. NAS-14.1]
          Length = 333

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 148/332 (44%), Positives = 202/332 (60%), Gaps = 6/332 (1%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRD 67
           MS         H PVLL  ++A + P  G+  LD TFGAGGY+R     G+  V+A+DRD
Sbjct: 4   MSGPSDTPSAPHTPVLLRPLLAAVAPVSGR-WLDGTFGAGGYTRGLLDAGAAQVVAVDRD 62

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
           P A    Q    DY ++  + +  FS++ DY  D  +DG+V DLGVSSMQ+D  +RGFSF
Sbjct: 63  PLAFEMAQAWAGDYGDRIVMQRGVFSKMDDYAQD--LDGIVLDLGVSSMQLDLAERGFSF 120

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
            + GPLDMRMS  G SA+D+VN+A  + +  IL   GEE+ + RIA AIV+ R+ AP  T
Sbjct: 121 MRDGPLDMRMSQDGPSAADIVNEAEEEVIANILFQYGEERASRRIAKAIVRAREEAPITT 180

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T  L+ L++  +  SK  + HPATRSFQALRI VNNE  EL  GL +AE+ALK GG L V
Sbjct: 181 TLALAGLVEGCLPRSKPGQSHPATRSFQALRIAVNNEYGELFNGLMAAERALKPGGQLAV 240

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPS-NAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+FHS+EDR+VK+F  +R+G         P   A    F+ + +K + P  +++  N RS
Sbjct: 241 VTFHSVEDRMVKRFLTARAGAGGNANRFAPEIEAPEPQFKILKRKAIGPDAQELEENPRS 300

Query: 307 RSAKLRAGMRTVERSIE-DDSFVHLPRLPTLS 337
           RSAKLR  +RT   +   D   + +P +  L+
Sbjct: 301 RSAKLRVAIRTDAPAGSIDAKALGMPMVRGLT 332


>gi|57866678|ref|YP_188327.1| S-adenosyl-methyltransferase MraW [Staphylococcus epidermidis
           RP62A]
 gi|242242461|ref|ZP_04796906.1| S-adenosyl-methyltransferase MraW [Staphylococcus epidermidis
           W23144]
 gi|68565427|sp|Q5HQ13|RSMH_STAEQ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|57637336|gb|AAW54124.1| S-adenosyl-methyltransferase MraW [Staphylococcus epidermidis
           RP62A]
 gi|242234035|gb|EES36347.1| S-adenosyl-methyltransferase MraW [Staphylococcus epidermidis
           W23144]
 gi|319401527|gb|EFV89737.1| S-adenosyl-methyltransferase MraW [Staphylococcus epidermidis
           FRI909]
          Length = 311

 Score =  374 bits (962), Expect = e-102,   Method: Composition-based stats.
 Identities = 101/308 (32%), Positives = 162/308 (52%), Gaps = 9/308 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  HV V+L + I  LN     V +D T G  G++            +IA+D+D  A+  
Sbjct: 1   MFHHVSVMLNETIDYLNIKEDGVYVDCTLGGAGHALYLLNQLNDKGRLIAIDQDLTAIEN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E ++++  + +     F +L + + +     VDG+ +DLGVSS Q+D  +RGFS+   
Sbjct: 61  AKEVLKEHLHKVTFVHNNFRELTNILNELEIDKVDGIYYDLGVSSPQLDVPERGFSYHND 120

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM  +  +SA +VVNQ + + L +I    GEEK + +IA  I   R+  P +TT 
Sbjct: 121 AKLDMRMDQTQSLSAYEVVNQWSYEALVKIFYRYGEEKFSKQIARRIEAHREQQPIETTL 180

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I++ +    +    HPA R FQA+RI VN+E+      +  A + +K GG + V+
Sbjct: 181 ELVDVIKEGIPAKARRKGGHPAKRVFQAIRIAVNDELSAFEDSVEQAIECVKVGGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F          R   +   A+    + + +K +  T +D+  N R+R
Sbjct: 241 TFHSLEDRLCKQIFQEFEKGPDVPRGLPVIPEAYTPKLKRVNRKPITATDDDLNENNRAR 300

Query: 308 SAKLRAGM 315
           SAKLR   
Sbjct: 301 SAKLRVAE 308


>gi|329117643|ref|ZP_08246360.1| S-adenosyl-methyltransferase MraW [Streptococcus parauberis NCFD
           2020]
 gi|326908048|gb|EGE54962.1| S-adenosyl-methyltransferase MraW [Streptococcus parauberis NCFD
           2020]
          Length = 316

 Score =  374 bits (962), Expect = e-102,   Method: Composition-based stats.
 Identities = 104/320 (32%), Positives = 167/320 (52%), Gaps = 15/320 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M+   H     H+ VLL + + +LN  P  + +DAT G  G+S           ++   D
Sbjct: 1   MTKEFH-----HITVLLNETVDMLNVKPDGIYVDATLGGAGHSAYLLSQLNENGHLYCFD 55

Query: 66  RDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120
           +D  A+   Q  ++ +  K Q +  +  F  L+  +   GV   DG+++DLGVSS Q+D 
Sbjct: 56  QDQKAIDNAQVFLKPFIDKGQVTFIKDNFRNLKSRLASLGVTEIDGILYDLGVSSPQLDE 115

Query: 121 GDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS+++  PLDMRM     ++A  VVN     DL RI    GE+K + +IA  I + 
Sbjct: 116 RERGFSYRQDAPLDMRMDTEAELTAYQVVNHYAFNDLVRIFFRYGEDKFSKQIARKIEQA 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R+  P +TT +L+ LI+      +   + HPA + FQA+RI VN+E+    + ++ A   
Sbjct: 176 REIKPIETTAELAELIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAAEESIQQAMDI 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L   G + V++FHSLEDRL K+ F   S   +     I        F+ +++K ++P+ E
Sbjct: 236 LALDGRISVITFHSLEDRLTKQLFKEASTVDVPKNIPIIPEHLQPKFELVSRKPILPSLE 295

Query: 299 DVAFNRRSRSAKLRAGMRTV 318
           ++  N R+ SAKLR   +  
Sbjct: 296 ELEANNRAHSAKLRVARKIR 315


>gi|168486616|ref|ZP_02711124.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           CDC1087-00]
 gi|168490752|ref|ZP_02714895.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           CDC0288-04]
 gi|183570380|gb|EDT90908.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           CDC1087-00]
 gi|183574822|gb|EDT95350.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           CDC0288-04]
 gi|301801259|emb|CBW33934.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae INV200]
 gi|327390750|gb|EGE89090.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           GA04375]
          Length = 316

 Score =  374 bits (962), Expect = e-102,   Method: Composition-based stats.
 Identities = 106/319 (33%), Positives = 170/319 (53%), Gaps = 15/319 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M+   H     HV VLL + I +L+  P  + +DAT G  G+S           ++ A D
Sbjct: 1   MTKEFH-----HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFD 55

Query: 66  RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120
           +D  A+   Q+ +  Y E+   +  +  F  LQ  + + GV   DG+ +DLGVSS Q+D 
Sbjct: 56  QDQNAIDNAQKRLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQ 115

Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS++K  PLDMRM+    ++A +VVN  +  DL RI    GE+K + +IA  I + 
Sbjct: 116 RERGFSYKKDAPLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQA 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R+  P +TT +L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   
Sbjct: 176 REVKPIETTTELAEIIKLVKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDM 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L   G + V++FHSLEDRL K+ F   S   +        +      + +++K ++P+ E
Sbjct: 236 LALDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAE 295

Query: 299 DVAFNRRSRSAKLRAGMRT 317
           ++  N RS SAKLR   + 
Sbjct: 296 ELEANNRSHSAKLRVVRKI 314


>gi|149001556|ref|ZP_01826529.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           SP14-BS69]
 gi|149006085|ref|ZP_01829814.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           SP18-BS74]
 gi|237649375|ref|ZP_04523627.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae CCRI
           1974]
 gi|237821592|ref|ZP_04597437.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae CCRI
           1974M2]
 gi|147760014|gb|EDK67003.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           SP14-BS69]
 gi|147762441|gb|EDK69402.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae
           SP18-BS74]
          Length = 316

 Score =  374 bits (962), Expect = e-102,   Method: Composition-based stats.
 Identities = 106/319 (33%), Positives = 171/319 (53%), Gaps = 15/319 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M+   H     HV VLL + I +L+  P  + +DAT G  G+S           ++ A D
Sbjct: 1   MTKEFH-----HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFD 55

Query: 66  RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120
           +D  A+   Q+ +  Y E+   +  +  F  LQ  + + GV   DG+ +DLGVSS Q+D 
Sbjct: 56  QDQNAIDNAQKRLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQ 115

Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS++K  PLDMRM+    ++A +VVN  + +DL RI    GE+K + +IA  I + 
Sbjct: 116 RERGFSYKKDAPLDMRMNQDASLTAYEVVNNYDYRDLVRIFFKYGEDKFSKQIARKIEQA 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R+  P +TT +L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   
Sbjct: 176 REVKPIETTTELAEIIKLVKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDM 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L   G + V++FHSLEDRL K+ F   S   +        +      + +++K ++P+ E
Sbjct: 236 LALDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAE 295

Query: 299 DVAFNRRSRSAKLRAGMRT 317
           ++  N RS SAKLR   + 
Sbjct: 296 ELEANNRSHSAKLRVVRKI 314


>gi|302391523|ref|YP_003827343.1| S-adenosyl-methyltransferase MraW [Acetohalobium arabaticum DSM
           5501]
 gi|302203600|gb|ADL12278.1| S-adenosyl-methyltransferase MraW [Acetohalobium arabaticum DSM
           5501]
          Length = 311

 Score =  374 bits (962), Expect = e-102,   Method: Composition-based stats.
 Identities = 114/307 (37%), Positives = 173/307 (56%), Gaps = 9/307 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQ 75
           +H+PVLL + I LL+     + +D T G GG++            +I +D+D  A+   +
Sbjct: 4   EHIPVLLTETIELLDCKEDGIYVDCTVGGGGHAVEIADKLTTDGTLIGIDQDLAAIEAAK 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E++ + + +  L +  +  +   +   G   VDG++FDLG SS QID   RGFS+Q   P
Sbjct: 64  ESLSNAECKVELVRDNYKNIDRVLNRFGIDSVDGLLFDLGFSSHQIDTAQRGFSYQYEAP 123

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM   +  +A+D+VN  +  +LT I+   GEEK ASRIA  IV+ RQ  PF+ T +L
Sbjct: 124 LDMRMDQRASRTAADLVNDLSQSELTDIIAEYGEEKWASRIAEFIVRYRQDKPFKLTTEL 183

Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
              I+  +   ++ +  HPA R+FQALRI VNNE+E L + L      LK+GG +  ++F
Sbjct: 184 VETIKAAIPAGARRSGPHPAKRTFQALRIAVNNELEVLTKTLDKIVPLLKSGGRMAFITF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  F   +   +      + +    A  + ITKK +   Q+++  N R+RSA
Sbjct: 244 HSLEDRIVKHKFKELAQDCICPPDFPVCACDEEAEVEIITKKPITAQQKEIDDNPRARSA 303

Query: 310 KLRAGMR 316
           KLRA  +
Sbjct: 304 KLRAAEK 310


>gi|70726737|ref|YP_253651.1| S-adenosyl-methyltransferase MraW [Staphylococcus haemolyticus
           JCSC1435]
 gi|88909220|sp|Q4L5N0|RSMH_STAHJ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|68447461|dbj|BAE05045.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 311

 Score =  374 bits (962), Expect = e-102,   Method: Composition-based stats.
 Identities = 101/308 (32%), Positives = 162/308 (52%), Gaps = 9/308 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H+ V+L + I  L+     + +D T G  G++            +IA+D+D  A+  
Sbjct: 1   MFHHISVMLNETIDYLDIKEDGIYVDCTLGGAGHALYLLNQLNDDGRLIAIDQDTTALDN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E ++D+  + +   + F +L D + +   + VDG+ +DLGVSS Q+D  +RGFS+   
Sbjct: 61  AKEVLKDHLHKVTFVHSNFRELTDILKNLNIEKVDGIYYDLGVSSPQLDVPERGFSYHHD 120

Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM  +  +SA +VVNQ   + L +I    GEEK + +IA  I   R+  P +TT 
Sbjct: 121 AKLDMRMDQTQQLSAYEVVNQWPYEALVKIFYRYGEEKFSKQIARRIETHREHQPIETTL 180

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I++ +    +    HPA R FQA+RI VN+E+      +  A + +K GG + V+
Sbjct: 181 ELVDIIKEGIPAKARRKGGHPAKRVFQAIRIAVNDELSAFEDSIEQAIELVKVGGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F          R   I   A+    + + +K +  T  D+  N R+R
Sbjct: 241 TFHSLEDRLCKQMFQEYEKGPDVPRGLPIIPEAYTPKLKRVNRKPITATDTDLDENNRAR 300

Query: 308 SAKLRAGM 315
           SAKLR   
Sbjct: 301 SAKLRVAE 308


>gi|307256031|ref|ZP_07537819.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Actinobacillus pleuropneumoniae serovar 10 str. D13039]
 gi|306865453|gb|EFM97348.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Actinobacillus pleuropneumoniae serovar 10 str. D13039]
          Length = 313

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 120/316 (37%), Positives = 175/316 (55%), Gaps = 16/316 (5%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69
           ++ T+  H+ VLL + +  L   P  + +D TFG GG+SR           +IA DRDP 
Sbjct: 1   MNDTVHKHITVLLHEAVDGLAIKPNGIYIDGTFGRGGHSRLILSKLSEQGRLIATDRDPR 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGF 125
           A++           +F +    FS + D     G    +DG++ DLGVSS Q+D  +RGF
Sbjct: 61  AIAEANTI---DDTRFQIVHTAFSAIPDVCEQLGLTGKIDGILLDLGVSSPQLDDAERGF 117

Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA- 183
           SF + GPLDMRM  + G+SA++ + Q +  DL  +L   GEE+ A RIA A+V   +SA 
Sbjct: 118 SFMRDGPLDMRMDTTKGLSAAEWLAQVSADDLAWVLKTFGEERFAKRIAQAVVSYNKSAT 177

Query: 184 -PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
                T  L+ +I   V F K+   HPATRSFQA+RIF+N+E++EL + L+SA   L   
Sbjct: 178 DKISRTLQLAQIIADAVPF-KDKHKHPATRSFQAIRIFINSELDELEKALQSALSVLAPE 236

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300
           G L ++SFHSLEDR+VK+F    S    V     +  S  +  +   I  K ++P++ ++
Sbjct: 237 GRLSIISFHSLEDRMVKQFMKKNSKGMGVPKGLPIFESELNKNIPLKIIGKAIMPSEAEI 296

Query: 301 AFNRRSRSAKLRAGMR 316
             N RSRSA LR   +
Sbjct: 297 EANPRSRSAVLRIAEK 312


>gi|325288822|ref|YP_004265003.1| Ribosomal RNA small subunit methyltransferase H [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324964223|gb|ADY55002.1| Ribosomal RNA small subunit methyltransferase H [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 310

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 115/308 (37%), Positives = 174/308 (56%), Gaps = 10/308 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
           +H  VLL++ +  +        +D TFG GG+SR   +  S+   +IA D+D  A    +
Sbjct: 4   EHTSVLLKETVDSVLTKADGTYVDCTFGGGGHSRLLLEKLSDQAKLIAFDQDEKAYLNAR 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  ++   F+  F  +++ +  +G   V G++FDLGVSS Q+D  +RGFS++   P
Sbjct: 64  CRFAG-DKRVIFFRRNFVHMENTLDTEGLLPVTGIMFDLGVSSPQLDEAERGFSYRHDAP 122

Query: 133 LDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S   SA+++VN  +  +LTRI+   GEEK ASRI+  IV+ R+    +TT  L
Sbjct: 123 LDMRMDRSAEFSAAELVNGWDEAELTRIIRAYGEEKWASRISKFIVEARKEQEIKTTGRL 182

Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+  V   ++    HPA R+FQALRI VN E++ LA+ L  A + L +GG L V++F
Sbjct: 183 VEIIKAAVPAGARKEGPHPAKRTFQALRIAVNRELDVLAEALDQALRCLDSGGRLAVITF 242

Query: 251 HSLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR VK+      G+        + +    A  + IT+K V+P+ E++  N RSRSA
Sbjct: 243 HSLEDRTVKEKILEWLGRCTCPQGFPVCTCGARAQVKQITRKPVIPSNEEIENNPRSRSA 302

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 303 KLRVVEKI 310


>gi|91205355|ref|YP_537710.1| S-adenosyl-methyltransferase MraW [Rickettsia bellii RML369-C]
 gi|122425755|sp|Q1RJ43|RSMH_RICBR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|91068899|gb|ABE04621.1| S-adenosyl-methyltransferase MraW [Rickettsia bellii RML369-C]
          Length = 305

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 127/304 (41%), Positives = 183/304 (60%), Gaps = 5/304 (1%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQE 76
             H+PV+L +++  L P  G+  LD TFGAGGYS++  +     V ALDRDP  +   +E
Sbjct: 3   QPHIPVMLNEMLKFLAPKAGESYLDCTFGAGGYSKALLENCDCYVTALDRDPNVIKKAEE 62

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
              +YK++F   +  F      +  K  DG+V DLGVSSMQ+D  DRGFSF   GPLDMR
Sbjct: 63  IKHNYKDRFDFVETNFGNCFAKLESKKFDGIVLDLGVSSMQLDIPDRGFSFLHDGPLDMR 122

Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
           MS  G+SA + +N A  KDL  ++   G+E  + RIA  IV+ R++A   +T  L+ +++
Sbjct: 123 MSGQGLSAEEFINTAEEKDLADVIYKYGDETFSRRIAKKIVEVRKAARIDSTGKLADIVR 182

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
             + F K  +I PAT++FQA+RI++NNE+ EL Q L + +  LK  G L+VVSFHSLEDR
Sbjct: 183 SCIGFRK-GKIDPATKTFQAIRIYINNELGELEQFLANVKNILKKDGRLVVVSFHSLEDR 241

Query: 257 LVKKFFASRSGKVMAVRHMIPSN---AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           +VK FF   S K +A       +         + IT K  +P+ ++++ N R+RSAKLRA
Sbjct: 242 IVKNFFKENSEKPVARSKYAKEDIMLNPDKWLKIITNKAEIPSDKEISLNVRARSAKLRA 301

Query: 314 GMRT 317
             + 
Sbjct: 302 AKKI 305


>gi|163868721|ref|YP_001609933.1| S-adenosyl-methyltransferase MraW [Bartonella tribocorum CIP
           105476]
 gi|263445963|sp|A9IWB6|RSMH_BART1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|161018380|emb|CAK01938.1| S-adenosyl-methyltransferase [Bartonella tribocorum CIP 105476]
          Length = 332

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 168/322 (52%), Positives = 215/322 (66%), Gaps = 3/322 (0%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+PVLL+ V+A L P  G  ++D TFGAGGY+R+  K G+ VIALDRDP A++ GQ  + 
Sbjct: 11  HIPVLLQPVLAGLMPLVGAKVIDGTFGAGGYTRALLKAGAQVIALDRDPHAIAAGQSLVD 70

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
           ++  +  L    FSQL   V +  VD V+ D+GVSSMQ+D  +RGFSFQK GPLDMRM+ 
Sbjct: 71  EFFPRLRLVHMEFSQLDRVVEE-KVDAVILDIGVSSMQLDEAERGFSFQKDGPLDMRMAQ 129

Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199
           +G SASDVVN    KDL RI  ILGEE+ A RIA  I KRR   PF  T DL+  I+  V
Sbjct: 130 TGFSASDVVNHLKAKDLARIFKILGEERYAGRIARMIEKRRAVQPFLRTGDLAYAIEALV 189

Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259
                +RIHPATR FQALRI+VN+EI ELA+GL +AE+ LKAGG L VVSFHSLEDR+VK
Sbjct: 190 GRKPGDRIHPATRVFQALRIYVNDEIGELARGLFAAERVLKAGGRLGVVSFHSLEDRMVK 249

Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319
           +FF SRSG+ M  RH+      PA F  + K  +   +E++  N RSRSA+LR G+RT  
Sbjct: 250 RFFVSRSGEGMRSRHLPEIKHSPATFFPLFKGGITANKEELQQNPRSRSARLRMGVRTNA 309

Query: 320 RSIEDDSFVHLPRLPTLSQFRG 341
            ++ +D  + L  L  ++ F G
Sbjct: 310 EALAED--MKLFGLAEIASFEG 329


>gi|110634365|ref|YP_674573.1| S-adenosyl-methyltransferase MraW [Mesorhizobium sp. BNC1]
 gi|123353547|sp|Q11GR7|RSMH_MESSB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|110285349|gb|ABG63408.1| S-adenosyl-methyltransferase MraW [Chelativorans sp. BNC1]
          Length = 339

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 152/324 (46%), Positives = 214/324 (66%), Gaps = 3/324 (0%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77
             H+PVLL +V+  L PA GK+ILD TFGAGGY+R+  + G++VIA+D+DP A++ G+  
Sbjct: 14  APHLPVLLAEVLEALEPARGKLILDGTFGAGGYTRALLEAGADVIAIDQDPDAIAGGKPL 73

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
            +++  +  L +  FS++++   +  +DG+V D+GVSSMQ+D  +RGFSF++ GPLDMRM
Sbjct: 74  AQEFAPRLRLERGRFSEMEEIAGEM-LDGIVLDVGVSSMQLDQAERGFSFRREGPLDMRM 132

Query: 138 SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK 197
              G SA+DVVN+    DL RI G+LGEE+ A RIA AI K R   PF+TT DL+ L+++
Sbjct: 133 GQEGTSAADVVNKFKAGDLARIFGLLGEERHAGRIARAIEKGRAEKPFRTTGDLAELVER 192

Query: 198 TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRL 257
            +     ++IHPATR FQ LRIFVN+E+ ELA+ L +AE+ LK GG+L VV+FHSLEDR+
Sbjct: 193 VIGHRPTDKIHPATRVFQGLRIFVNDELGELARALFAAERLLKPGGILAVVTFHSLEDRI 252

Query: 258 VKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           VK+F  +RSG     RH+    A   VF+    K V P + + A N R+RSA LRA  RT
Sbjct: 253 VKRFLQARSGPQAQSRHLPEKAAAQPVFEKP-MKPVSPGEAETAENPRARSAHLRAARRT 311

Query: 318 VERS-IEDDSFVHLPRLPTLSQFR 340
              + ++D     +P L    Q  
Sbjct: 312 AHPAGVQDFKLFGVPALFVTEQLG 335


>gi|224476281|ref|YP_002633887.1| S-adenosyl-methyltransferase MraW [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|262826678|sp|B9DPQ9|RSMH_STACT RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|222420888|emb|CAL27702.1| putative MraW methylase family S-adenosyl-methyltransferase
           [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 311

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 109/309 (35%), Positives = 169/309 (54%), Gaps = 11/309 (3%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  HV V+L + I  LN     V +D T G  G++           ++IA+D+D  A+  
Sbjct: 1   MFHHVSVMLRETIDELNVKKDGVYVDCTLGGAGHALYLLNQLDENGHLIAIDQDLTAIEN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E ++D+ +Q +   + F Q+   + D     VDG+ +DLGVSS Q+D  +RGFS+ + 
Sbjct: 61  AKEVLKDHLDQVTFVHSNFRQINQILDDLDIDKVDGIYYDLGVSSPQLDVPERGFSYHQD 120

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM  +  +SA +VVN+   +DL RI    GEEK + +IA  I K R++ P +TT 
Sbjct: 121 ARLDMRMDQTQELSAYEVVNEWPYEDLVRIFYRYGEEKFSKQIARRIEKTRENEPIETTL 180

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L  +I++ +    +    HPA R FQA+RI VN+E++     L  A + +K  G + V+
Sbjct: 181 QLVDVIKEGIPAKARRKGGHPAKRVFQAIRIAVNDELKAFEDSLEQAIERVKVHGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           +FHSLEDRL K+ F          R   +IP    P   + + +K +  ++ED+A N R+
Sbjct: 241 TFHSLEDRLCKQIFQEYEKGPEVPRGLPIIPEEYTPK-LKRVNRKPISASEEDLAENNRA 299

Query: 307 RSAKLRAGM 315
           RSAKLR   
Sbjct: 300 RSAKLRVAE 308


>gi|146342506|ref|YP_001207554.1| S-adenosyl-methyltransferase MraW [Bradyrhizobium sp. ORS278]
 gi|263445831|sp|A4YZL1|RSMH_BRASO RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|146195312|emb|CAL79337.1| S-adenosyl-dependent methyl transferase [Bradyrhizobium sp. ORS278]
          Length = 331

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 144/334 (43%), Positives = 199/334 (59%), Gaps = 9/334 (2%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRD 67
           MS+A       H+PVL  + +A+L P  G   +DATFGAGGY+R      G+ VIA+DRD
Sbjct: 1   MSTADP----RHIPVLGPEAVAMLAPRDGGTYVDATFGAGGYTRLILATPGTRVIAIDRD 56

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRG 124
             A++ G + + +   + +L ++ FS L +    + V   DG+V D+GVSSMQ+D   RG
Sbjct: 57  STAIAGGADLVGEANGRLTLVESRFSALAEICAAQAVGQVDGIVMDVGVSSMQLDTAARG 116

Query: 125 FSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           FSF+  GPLDMRM+ +G SA+DV+ QA+ +DL  ++ I GEE+ +  IA AIV  R+   
Sbjct: 117 FSFRFDGPLDMRMADTGPSAADVIAQASERDLADVIYIFGEERHSRGIARAIVAARKEQQ 176

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
             TT+ L+ ++ + V  SK   IHPATR+FQALRI VN E++EL Q L +AE+ L   G 
Sbjct: 177 ITTTRQLADIVARVV-RSKPGDIHPATRTFQALRILVNEELDELEQALSAAERILPPSGR 235

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           L VVSFHSLEDR+VK F A RS      RH+         FQ + +K VV  + +   N 
Sbjct: 236 LAVVSFHSLEDRIVKTFLAERSKIGGGSRHLPEIAQQAPSFQLLNRKPVVADEAETVANP 295

Query: 305 RSRSAKLRAGMRTVERSIEDDSFVHLPRLPTLSQ 338
           R+RSAKLR   RT   +    S    PRL  + +
Sbjct: 296 RARSAKLRGAARTTAPAHPPSSSSAWPRLADVMR 329


>gi|300361452|ref|ZP_07057629.1| S-adenosyl-methyltransferase MraW [Lactobacillus gasseri JV-V03]
 gi|300354071|gb|EFJ69942.1| S-adenosyl-methyltransferase MraW [Lactobacillus gasseri JV-V03]
          Length = 315

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 108/311 (34%), Positives = 169/311 (54%), Gaps = 13/311 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76
            H  VLL + I  LNP    + +DATFG GG++R      +   VI  D+D +A+S  +E
Sbjct: 4   KHKSVLLHETIDNLNPKDDGLYVDATFGGGGHARYLLSKLNRGTVIGFDQDEYAISMAKE 63

Query: 77  TMRD-----YKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSF 127
           +  +      + +  L    F  L+  + +     G+DG+ +DLGVSS Q D  +RGFS+
Sbjct: 64  SFAEELKPGAEPKLILVHDNFCHLKKNLVELGISDGIDGIYYDLGVSSPQFDQPERGFSY 123

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           +    LDMRM  S  + A  +VN  + K+L+ IL   G+EK + +IA  IV RR+  P  
Sbjct: 124 RFDARLDMRMDQSQELDAYTIVNTWSQKELSDILYKYGDEKFSRQIARKIVDRRREKPIV 183

Query: 187 TTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           TT DL  +I+  +   ++ +  HPA +SFQA+R+ VNNE+  L + L  A K L+ GG +
Sbjct: 184 TTFDLVDVIKDAIPAYARRSGGHPAKKSFQAIRVAVNNELGVLQESLEEAIKLLRPGGRI 243

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
            V++F S ED++VKK F   S   +     +         + I++K ++ + +++  N R
Sbjct: 244 SVITFQSHEDKIVKKIFKKYSEVEIPRGMPMVPADSKPTLRLISRKPIMASSDELEENNR 303

Query: 306 SRSAKLRAGMR 316
           S SAKLR   +
Sbjct: 304 SHSAKLRVAEK 314


>gi|89895661|ref|YP_519148.1| hypothetical protein DSY2915 [Desulfitobacterium hafniense Y51]
 gi|219670081|ref|YP_002460516.1| S-adenosyl-methyltransferase MraW [Desulfitobacterium hafniense
           DCB-2]
 gi|122482071|sp|Q24TD8|RSMH_DESHY RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446217|sp|B8FT64|RSMH_DESHD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|89335109|dbj|BAE84704.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219540341|gb|ACL22080.1| S-adenosyl-methyltransferase MraW [Desulfitobacterium hafniense
           DCB-2]
          Length = 310

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 102/307 (33%), Positives = 162/307 (52%), Gaps = 10/307 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            HV VLL++ +  +   P    +D T G  G+S            ++  D+DP A+   Q
Sbjct: 4   HHVTVLLKETVDGVVRDPSGTYVDCTLGGAGHSGYVLSRLSEKGKLVGFDQDPLAIKNAQ 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           +       +  L    F  L++ +       V GV+FDLGVSS Q+D  +RGFS+ +   
Sbjct: 64  DKFAG-DPRVFLVNRNFEGLEESLQSLELLPVQGVLFDLGVSSPQLDEAERGFSYMQDAE 122

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+  + +SA  +VN+   + L  IL   GEEK + RI   IV+ R+     TT +L
Sbjct: 123 LDMRMNPQNPLSAKTLVNEGKAEMLAEILWKYGEEKWSKRIVEFIVEARKQKSITTTGEL 182

Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I++ +   ++    HPA R+FQALRI VN+E+  L + L    + L  GG + V++F
Sbjct: 183 VDIIKRAIPAGARREGPHPAKRTFQALRIAVNDELGVLERALDQVIRCLAPGGRVGVITF 242

Query: 251 HSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK+ F S  G+        +      A+ + + +K ++P+ +++  N R+RSA
Sbjct: 243 HSLEDRIVKETFNSWLGRCTCPPVFPVCQCGARAMARLVHRKPILPSPQEIEANPRARSA 302

Query: 310 KLRAGMR 316
           KLR   +
Sbjct: 303 KLRIAEK 309


>gi|239636344|ref|ZP_04677346.1| S-adenosyl-methyltransferase MraW [Staphylococcus warneri L37603]
 gi|239597699|gb|EEQ80194.1| S-adenosyl-methyltransferase MraW [Staphylococcus warneri L37603]
          Length = 311

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 98/308 (31%), Positives = 161/308 (52%), Gaps = 9/308 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H+ V+L + I  LN     V +D T G  G++            +IA+D+D  A+  
Sbjct: 1   MFHHISVMLNETIDYLNIKEDGVYVDCTLGGAGHALYLLNQLSDEGRLIAIDQDLTAIEN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            ++ ++++  + +   + F +L   + +   + VDG+ +DLGVSS Q+D  +RGFS+   
Sbjct: 61  AKDVLKEHLHKVTFIHSNFRELTQILNELNIEKVDGIYYDLGVSSPQLDVPERGFSYHHD 120

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM  +  +SA +VVN+   + L +I    GEEK + +IA  I   R+  P +TT 
Sbjct: 121 AKLDMRMDQTQSLSAYEVVNEWPYEALVKIFYRYGEEKFSKQIARRIEANREKQPIETTL 180

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I++ +    +    HPA R FQA+RI VN+E+      +  A + +K  G + V+
Sbjct: 181 ELVEVIKEGIPAKARRKGGHPAKRVFQAIRIAVNDELSAFEDSIEQAIELVKVNGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F          R   +   A+    + + +K +  T ED+  N R+R
Sbjct: 241 TFHSLEDRLCKQMFQEYEKGPDVPRGLPVIPEAYTPKLKRVNRKPITATDEDLDDNNRAR 300

Query: 308 SAKLRAGM 315
           SAKLR   
Sbjct: 301 SAKLRIAE 308


>gi|163746120|ref|ZP_02153479.1| S-adenosyl-methyltransferase MraW [Oceanibulbus indolifex HEL-45]
 gi|161380865|gb|EDQ05275.1| S-adenosyl-methyltransferase MraW [Oceanibulbus indolifex HEL-45]
          Length = 327

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 148/320 (46%), Positives = 201/320 (62%), Gaps = 6/320 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78
           H PVLL  ++  + P    V LD TFGAGGY+R F + G+  VIA+DRDP A     E  
Sbjct: 11  HTPVLLRPILTAVAPVE-GVWLDGTFGAGGYTRGFLEAGAARVIAVDRDPLAFEMAAEWA 69

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138
            D+ ++ ++ Q  FS++ +Y  D  +DGVV DLGVSSMQ+D  +RGFSF K GPLDMRMS
Sbjct: 70  GDFGDRITMQQGVFSRMDEYAQD--LDGVVLDLGVSSMQLDQAERGFSFMKDGPLDMRMS 127

Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198
             G SA+D+VN+A  + +  IL   GEE+ + RIA +IV+ R+ AP  TT +L+ L++  
Sbjct: 128 QDGPSAADLVNEAEEEIIANILFQYGEERASRRIAKSIVRAREVAPITTTLELAKLVEGC 187

Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258
           +  SK  + HPATRSFQALRI VNNE  EL QGL +AE+ALK GG L VV+FHS+EDR+V
Sbjct: 188 LPRSKPGQSHPATRSFQALRIAVNNEYGELFQGLMAAERALKPGGKLAVVTFHSVEDRMV 247

Query: 259 KKFFASRSGKVMAVRHMIPS-NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           K+F  +R+G         P+       F   ++K + P  +++  N RSRSAKLR   RT
Sbjct: 248 KRFLTARAGAGGNANRFAPALEQEAPQFTLKSRKAIGPDAQELDENPRSRSAKLRVATRT 307

Query: 318 VERSIE-DDSFVHLPRLPTL 336
              S E D   + +P +  +
Sbjct: 308 DAPSGEIDAKSIGMPMVRGI 327


>gi|86137691|ref|ZP_01056268.1| S-adenosyl-methyltransferase MraW [Roseobacter sp. MED193]
 gi|85826026|gb|EAQ46224.1| S-adenosyl-methyltransferase MraW [Roseobacter sp. MED193]
          Length = 330

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 153/330 (46%), Positives = 206/330 (62%), Gaps = 6/330 (1%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRD 67
           M++      G HVPVLL  ++  + P  G+  LD TFGAGGY+R   + G+  VI +DRD
Sbjct: 1   MTTDRPTPSGPHVPVLLRPLLKAVAPVSGR-WLDGTFGAGGYTRGLLEAGAEQVIGVDRD 59

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
           P A    Q    DY ++  L +  FS++ +Y  D  +DGVV DLGVSSMQ+D  +RGFSF
Sbjct: 60  PLAFELAQPWAADYGDRLVLQEGVFSKMDEYAQD--LDGVVLDLGVSSMQLDLAERGFSF 117

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
            + GPLDMRMS SG SA+D+V + +   L  IL   GEE+ + RIA +IVK R+  P  T
Sbjct: 118 MRDGPLDMRMSQSGPSAADLVAELSEVQLADILFHFGEERASRRIAKSIVKTRELEPITT 177

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T  L+ LI+  +  +K  + HPATRSFQALRI VN E EEL  GL +AE+ALK GGLL V
Sbjct: 178 TLQLAKLIEGCLPRAKPGKSHPATRSFQALRIAVNAEYEELFNGLLAAERALKPGGLLAV 237

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRS 306
           V+FHS+EDR+VK+FF  R+ K        P  A  P+ F+ +T+K V P  +++A N RS
Sbjct: 238 VTFHSVEDRMVKRFFQHRANKTGRANRYAPEVAEIPSQFELVTRKAVGPDDDELAENPRS 297

Query: 307 RSAKLRAGMRTVERSIEDDSF-VHLPRLPT 335
           RSA+LR G RT    +   +  + +P+L  
Sbjct: 298 RSARLRVGRRTDAAPVPISAKDLSMPQLKE 327


>gi|118581697|ref|YP_902947.1| S-adenosyl-methyltransferase MraW [Pelobacter propionicus DSM 2379]
 gi|262824775|sp|A1AU69|RSMH_PELPD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|118504407|gb|ABL00890.1| S-adenosyl-methyltransferase MraW [Pelobacter propionicus DSM 2379]
          Length = 313

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 125/307 (40%), Positives = 176/307 (57%), Gaps = 10/307 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQ 75
           H+ V+ E+V+  L+P PG   LD T G GG++    +     G  +I +DRD  A+    
Sbjct: 6   HLSVMPEEVLRFLSPRPGGCYLDGTLGGGGHAALVAERCAPGGGTLIGMDRDLEALKAAA 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E +  + +   L    F+ +   +   GVD   G V DLGVSS Q+D   RGFSFQ+ G 
Sbjct: 66  ERLSRFGDAVRLLHGNFADIATRLDSLGVDALDGFVLDLGVSSHQLDTARRGFSFQQEGA 125

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM   SG +A+D+VN+    +L RI+   GEE+ A RIA  IV+ R  AP + T  L
Sbjct: 126 LDMRMDGDSGETAADLVNRLPEHELERIIREYGEERWAKRIASFIVRARSEAPIENTLRL 185

Query: 192 SSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+  +  +K   R+HPATR+FQALRI VN+E+E L +GL+SA   LK GG  +V+SF
Sbjct: 186 VDIIKGAIPKAKWEERLHPATRTFQALRIAVNHELESLERGLKSAIDRLKPGGRGVVISF 245

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  F   +      R+  +         + +T + V  T+E++  N RSRSA
Sbjct: 246 HSLEDRIVKHVFREYAAGCTCPRNLPVCVCGRQPRVRVLTGRPVTATEEELRDNPRSRSA 305

Query: 310 KLRAGMR 316
           KLRA  +
Sbjct: 306 KLRAVEK 312


>gi|257451725|ref|ZP_05617024.1| methyltransferase [Fusobacterium sp. 3_1_5R]
          Length = 313

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 108/307 (35%), Positives = 175/307 (57%), Gaps = 10/307 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H+PVL E+ +  L   P  + +D T G G +S    K       +I++D+D  A++  ++
Sbjct: 9   HIPVLYEETLDQLVWNPDGIYIDCTLGGGSHSEGILKRLSEKGRLISIDQDANAIAFCKK 68

Query: 77  TMRDYKEQFSLFQATFSQLQ--DYVPD-KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  Y +Q+S+FQ  F  +    Y+     VDG++ D+GVSS Q+D G+RGFS++    L
Sbjct: 69  RLEKYGKQWSVFQNNFENIDIVSYLAGVDKVDGILMDIGVSSTQLDDGERGFSYRYDAKL 128

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+    +SA +VVN    +DL RIL   GEE+ A +IA  I + R+  P +TT +L 
Sbjct: 129 DMRMNKEQDLSAYEVVNTYAEQDLVRILFEYGEERHAKKIASFICENRKEKPIETTGELV 188

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           ++I++   +S+    HPA ++FQA+RI VN E+E L + ++ +   LK  G L +++FHS
Sbjct: 189 AIIKRA--YSERASKHPAKKTFQAIRIEVNRELEVLEKAIKKSVDLLKPKGHLAIITFHS 246

Query: 253 LEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDRLVK  F   +          +      A  + +TKK ++P+++++  N R+ S+KL
Sbjct: 247 LEDRLVKTVFKDLATACKCPPELPVCVCGGKAKVKILTKKPIIPSEDELGKNNRAHSSKL 306

Query: 312 RAGMRTV 318
           R   R  
Sbjct: 307 RVVERLA 313


>gi|294085909|ref|YP_003552669.1| S-adenosyl-methyltransferase MraW [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292665484|gb|ADE40585.1| S-adenosyl-methyltransferase MraW [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 334

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 149/326 (45%), Positives = 194/326 (59%), Gaps = 17/326 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQETM 78
           H  VLL +V+  L P  GKV LDATFG GGYSR+        VIA+DRDP A++ GQ+ +
Sbjct: 7   HQSVLLNEVVDALRPTNGKVYLDATFGNGGYSRALLDAADCTVIAIDRDPDAIARGQKMV 66

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGV---------------DGVVFDLGVSSMQIDCGDR 123
            +YK +F+L +  FS++Q  V    V               DG  FDLGV S Q+D  DR
Sbjct: 67  AEYKPRFTLVEGCFSEMQSLVQSALVSTGSGSTSHADVPVLDGAAFDLGVCSTQLDQADR 126

Query: 124 GFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           GFSF++ GPLDMRMS SGISA+D+V      D+ +IL   GEEK + RIA AIVK R   
Sbjct: 127 GFSFRQDGPLDMRMSQSGISAADIVMTHEEHDIAQILWEYGEEKASRRIAKAIVKARSET 186

Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
              +T  L+++I   +   +  +I PATRSFQALRI+VN E++EL   L ++E  LK GG
Sbjct: 187 AISSTSQLAAIIHSVMPAKRPGQIDPATRSFQALRIYVNRELDELKSALTTSEAMLKPGG 246

Query: 244 LLIVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           +L VVSFHSLEDR+VK+F ASRS       RH  PSN     F+ +T+K +     +   
Sbjct: 247 ILAVVSFHSLEDRIVKRFLASRSQIASQPSRHRPPSNGPAPTFELLTRKALQAGTRERED 306

Query: 303 NRRSRSAKLRAGMRTVERSIEDDSFV 328
           N R+RSAKLR  MRT       +  +
Sbjct: 307 NSRARSAKLRVAMRTNAPYPGQEDAL 332


>gi|53729126|ref|ZP_00134091.2| COG0275: Predicted S-adenosylmethionine-dependent methyltransferase
           involved in cell envelope biogenesis [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126207498|ref|YP_001052723.1| S-adenosyl-methyltransferase MraW [Actinobacillus pleuropneumoniae
           L20]
 gi|263440608|sp|A3MY82|RSMH_ACTP2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|126096290|gb|ABN73118.1| S-adenosyl-methyltransferase MraW [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
          Length = 313

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 120/316 (37%), Positives = 177/316 (56%), Gaps = 16/316 (5%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69
           ++ T+  H+ VLL + +  L   P  + +D TFG GG+SR           +IA DRDP 
Sbjct: 1   MNDTVHKHITVLLHEAVDGLAIKPNGIYIDGTFGRGGHSRLILSKLSEQGRLIATDRDPR 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGF 125
           A++           +F +    FS + +     G    +DG++ DLGVSS Q+D  +RGF
Sbjct: 61  AIAEANTI---NDARFQIVHTAFSAIPEVCEQLGLTGKIDGILLDLGVSSPQLDDAERGF 117

Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA- 183
           SF + GPLDMRM  + G+SA++ + Q +V DL  +L   GEE+ A RIA A+V   +SA 
Sbjct: 118 SFMRDGPLDMRMDTTKGLSAAEWLAQVSVDDLAWVLKTFGEERFAKRIAQAVVSYNKSAT 177

Query: 184 -PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
                T  L+ +I   V F K+   HPATRSFQA+RIF+N+E++EL + L+SA   L   
Sbjct: 178 DKISRTLQLAQIIADAVPF-KDKHKHPATRSFQAIRIFINSELDELEKALQSALSVLAPE 236

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300
           G L ++SFHSLEDR+VK+F    S    V     ++ S  +  +   I  K ++P++ ++
Sbjct: 237 GRLSIISFHSLEDRMVKQFMKKNSKGMGVPKGLPILESELNKNIPLKIIGKAIMPSEAEI 296

Query: 301 AFNRRSRSAKLRAGMR 316
             N RSRSA LR   +
Sbjct: 297 EANPRSRSAVLRIAEK 312


>gi|262831468|sp|C5WIJ4|RSMH_STRDG RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 316

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 107/320 (33%), Positives = 170/320 (53%), Gaps = 15/320 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M+   H     HV VLL + + +L+  P  + +DAT G  G+S           ++   D
Sbjct: 1   MTKEFH-----HVTVLLHETVDMLDIKPNGIYVDATLGGSGHSAYLLSKLSEQGHLYCFD 55

Query: 66  RDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDC 120
           +D  A+   Q T++ Y  K Q +  +  F  L+  +   GVD   G+++DLGVSS Q+D 
Sbjct: 56  QDQKAIDNAQVTLKSYIDKGQVTFIKDNFRHLKARLTALGVDEIDGILYDLGVSSPQLDE 115

Query: 121 GDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS+ +  PLDMRM   + ++A DVVN     DL +I    GE+K + +IA  I + 
Sbjct: 116 RERGFSYNQDAPLDMRMDRQAPLTAYDVVNTYPFNDLVKIFFKYGEDKFSKQIARKIEQA 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R   P +TT +L+ LI+      +   + HPA + FQA+RI VN+E+    + ++ A + 
Sbjct: 176 RAIKPIETTTELAELIKAAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQDAMEL 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L   G + V++FHSLEDRL K+ F   S   +              F+ +++K ++P+QE
Sbjct: 236 LALDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPFIPEDMKPTFELVSRKPILPSQE 295

Query: 299 DVAFNRRSRSAKLRAGMRTV 318
           ++A N R+ SAKLR   +  
Sbjct: 296 ELAANNRAHSAKLRVAKKIR 315


>gi|238927330|ref|ZP_04659090.1| S-adenosylmethionine-dependent methyltransferase involved in cell
           envelope biogenesis [Selenomonas flueggei ATCC 43531]
 gi|238884612|gb|EEQ48250.1| S-adenosylmethionine-dependent methyltransferase involved in cell
           envelope biogenesis [Selenomonas flueggei ATCC 43531]
          Length = 312

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 122/311 (39%), Positives = 168/311 (54%), Gaps = 10/311 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVS 72
           T   HV VLLE+ +  LN  P  + +DAT G  G++R           +I +D+D  A++
Sbjct: 2   TEFHHVSVLLEETVGALNVMPDGIYVDATLGGAGHARRIAAHLSEHGRLIGIDQDETAIA 61

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQK 129
              E + D + Q SL +  F  L   +  +GV   DGV+FDLGVSS QID  +RGFS+ +
Sbjct: 62  AAHERLADVRCQVSLVRDNFRNLSAILAAEGVFSVDGVLFDLGVSSPQIDTPERGFSYMQ 121

Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM   + +SA DVVN    + LT I    GEE+ A RIA  I K RQ+ P  TT
Sbjct: 122 DAPLDMRMDQRARLSAYDVVNAYTAEQLTEIFYTYGEERWAKRIAAFIEKERQAHPIATT 181

Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            DL ++I + V    +    HPA R FQA+RI VN+E+  L   L +A  AL+ GG L V
Sbjct: 182 GDLVAVIDRAVPKEVRARGGHPAKRVFQAIRIEVNDELGILEGALSAAVNALRIGGRLAV 241

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           ++FHSLEDR+VK      +   +   H  +    H    + +  K     +E+ A N R+
Sbjct: 242 ITFHSLEDRIVKNTLRRLAQGCICPPHTPVCVCGHTPEVRLV-GKAKAAGKEECAANTRA 300

Query: 307 RSAKLRAGMRT 317
           RSAKLR   + 
Sbjct: 301 RSAKLRVAEKI 311


>gi|312869527|ref|ZP_07729682.1| S-adenosyl-methyltransferase MraW [Lactobacillus oris PB013-T2-3]
 gi|311094974|gb|EFQ53263.1| S-adenosyl-methyltransferase MraW [Lactobacillus oris PB013-T2-3]
          Length = 317

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 112/313 (35%), Positives = 173/313 (55%), Gaps = 11/313 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73
               HV VLL++ +A LN  P    +D T G GG++ +        ++ + D+D  A+  
Sbjct: 4   ATFKHVTVLLQEAVAGLNVQPAGTYVDGTLGGGGHTSAILGQLTTGHLYSFDQDETAIDY 63

Query: 74  GQETMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQ 128
            ++ ++D     + +L +  F  LQ  +  +GV   DGV++DLGVSS Q D   RGFS+Q
Sbjct: 64  NRDRLKDALAAGKLTLIEDNFRHLQKDLAAQGVHKVDGVLYDLGVSSPQFDDAQRGFSYQ 123

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
              PLDMRM+    +SA +VVN+   + L RIL   GEE+ A +IA  I +RRQ  P +T
Sbjct: 124 LDAPLDMRMNQGQSLSAMEVVNEWPYERLVRILYRYGEERFAKQIARKIEQRRQREPIRT 183

Query: 188 TQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T +L  +I++ +  + + +  HPA +SFQA+RI VN+E+  L + L  A   L  GG + 
Sbjct: 184 TFELVDVIKEAIPAAARRHGGHPAKKSFQAIRIAVNDELGALEESLEQALAMLAVGGRIS 243

Query: 247 VVSFHSLEDRLVKKFFASRS--GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           V++F SLEDRLVK  F  +S     +     +        F+ I +K ++P  +++A N 
Sbjct: 244 VITFQSLEDRLVKTMFKEKSSISDDLPQGLPVIPEGMSPDFKLINRKPILPGTQELAENH 303

Query: 305 RSRSAKLRAGMRT 317
           R+ SAKLR   + 
Sbjct: 304 RAHSAKLRIIEKI 316


>gi|258438778|ref|ZP_05689931.1| S-adenosyl-methyltransferase mraW [Staphylococcus aureus A9299]
 gi|257848037|gb|EEV72030.1| S-adenosyl-methyltransferase mraW [Staphylococcus aureus A9299]
          Length = 311

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 99/308 (32%), Positives = 160/308 (51%), Gaps = 9/308 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H+ V+L + I  LN     V +D T G  G++            +IA+D+D  A+  
Sbjct: 1   MFHHISVMLNETIDYLNVKENGVYIDCTLGGAGHALYLLNQLNDDGRLIAIDQDQTAIDN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E ++D+  + +   + F +L   + D   + VDG+ +DLGVSS Q+D  +RGFS+   
Sbjct: 61  AKEVLKDHLHKVTFVHSNFRELTQILKDLNIEKVDGIYYDLGVSSPQLDIPERGFSYHHD 120

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM  +  ++A ++VN  + + L +I    GEEK + +IA  I    +  P  TT 
Sbjct: 121 ATLDMRMDQTQELTAYEIVNNWSYEALVKIFYRYGEEKFSKQIARRIEAHCEQQPITTTL 180

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I++ +    +    HPA R FQALRI VN+E+      +  A + +K  G + V+
Sbjct: 181 ELVDIIKEGIPAKARRKGGHPAKRVFQALRIAVNDELSAFEDSIEQAIELVKVDGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F          R   +   A+    + + +K +  T+ED+  N R+R
Sbjct: 241 TFHSLEDRLCKQVFQEYEKGPEVPRGLPVIPEAYTPKLKRVNRKPITATEEDLDDNNRAR 300

Query: 308 SAKLRAGM 315
           SAKLR   
Sbjct: 301 SAKLRVAE 308


>gi|294784023|ref|ZP_06749345.1| S-adenosyl-methyltransferase MraW [Fusobacterium sp. 1_1_41FAA]
 gi|294479835|gb|EFG27614.1| S-adenosyl-methyltransferase MraW [Fusobacterium sp. 1_1_41FAA]
          Length = 314

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 103/308 (33%), Positives = 171/308 (55%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+PVL  + +  L   P  V +D T G G +S    +  S+   ++++D+D  A+   ++
Sbjct: 9   HIPVLYYETLDNLVINPDGVYIDCTLGGGSHSEGILERLSDKGLLLSIDQDSNAIEYSKK 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  Y  ++ + +  F  +       G   VDG++ D+GVSS Q+D  +RGFS++    L
Sbjct: 69  RLEKYASKWKVLKGNFENIDTLAYMAGIDKVDGILMDIGVSSKQLDEAERGFSYRYDVKL 128

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+    +SA DVVN  + ++L+RI+   GEE+ A +IA  I + R+  P  TT +L 
Sbjct: 129 DMRMNTEQKLSAYDVVNTYSEEELSRIIFEYGEERFARKIAKLICENRKIKPITTTFELV 188

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +LI++     +    HPA ++FQA+RI VN E+E L   +  A + LK GG L +++FHS
Sbjct: 189 ALIRRAYP--ERASKHPAKKTFQAIRIEVNRELEVLENAMSKAVELLKVGGRLGIITFHS 246

Query: 253 LEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK  F   +      +   I        F+ IT+K ++P ++++  N R+ S+KL
Sbjct: 247 LEDRIVKNKFKDLATACKCPKDIPICMCGGVKKFEIITRKPIIPIEDELKNNNRAHSSKL 306

Query: 312 RAGMRTVE 319
           R   R ++
Sbjct: 307 RILERILD 314


>gi|254467183|ref|ZP_05080594.1| S-adenosyl-methyltransferase MraW [Rhodobacterales bacterium Y4I]
 gi|206688091|gb|EDZ48573.1| S-adenosyl-methyltransferase MraW [Rhodobacterales bacterium Y4I]
          Length = 330

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 149/333 (44%), Positives = 205/333 (61%), Gaps = 6/333 (1%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRD 67
           M+       G H+PVLL  ++  + P  G+  LD TFGAGGY+R     G++ VIA+DRD
Sbjct: 1   MTDRPSAPSGPHIPVLLRPLLKAVAPVSGR-WLDGTFGAGGYTRGLLDAGADQVIAVDRD 59

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
           P A    +     Y ++  L Q  FS++ +Y  D  +DGVV DLGVSSMQ+D  +RGFSF
Sbjct: 60  PLAFELAKPWAGQYGDRLILQQGVFSRMDEYAQD--LDGVVLDLGVSSMQLDLAERGFSF 117

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
            K GPLDMRMS SG SA+D++ +     +  IL   GEE+ + RIA AIV+ R++ P  T
Sbjct: 118 MKDGPLDMRMSQSGPSAADLIAELTEAQIADILYHYGEERASRRIARAIVREREAEPITT 177

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T  L+ +I+  +   K  + HPATRSFQ LRI VN E EEL +GL +AE+ALK GGLL V
Sbjct: 178 TLRLAGIIESCLPRPKPGQSHPATRSFQGLRIAVNAEYEELFEGLLAAERALKPGGLLAV 237

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPS-NAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+FHS+EDR+VK+FF  R+GK        P     PA F+ +T+K V P ++++A N R+
Sbjct: 238 VTFHSVEDRMVKRFFQHRAGKTGRANRYAPEQEETPAQFELVTRKAVGPDEQELAENPRA 297

Query: 307 RSAKLRAGMRTVERSIEDDSF-VHLPRLPTLSQ 338
           RSA+LR G RT        +  + +P+L    +
Sbjct: 298 RSARLRVGRRTNAAPGPISAKELGMPQLKETPK 330


>gi|313890654|ref|ZP_07824281.1| S-adenosyl-methyltransferase MraW [Streptococcus pseudoporcinus
           SPIN 20026]
 gi|313120965|gb|EFR44077.1| S-adenosyl-methyltransferase MraW [Streptococcus pseudoporcinus
           SPIN 20026]
          Length = 316

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 101/320 (31%), Positives = 166/320 (51%), Gaps = 15/320 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65
           M+   H     H+ VLL + + +L   P  + +DAT G  G+S           ++   D
Sbjct: 1   MTKEFH-----HITVLLHETVDMLQVKPDGIYVDATLGGAGHSAYLLSQLNEHGHLYCFD 55

Query: 66  RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDC 120
           +D  A+   Q  +  + E+   +  +  F  L+  +   GVD   G+++DLGVSS Q+D 
Sbjct: 56  QDQKAIDNAQVFLAPFIEKGMVTFIKDNFRHLKSQMQAHGVDFIDGILYDLGVSSPQLDE 115

Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS+++  PLDMRM     ++A  VVN  +  DL RI    GE++ + ++A  I + 
Sbjct: 116 RERGFSYRQDAPLDMRMDSDASLTAYQVVNDYSFNDLVRIFFRYGEDRFSKQVARKIEQA 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R   P +TT +L+ LI+      +   + HPA + FQA+RI VN+E+    + L+ A   
Sbjct: 176 RAIKPIETTAELAELIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAAEESLQQAMDV 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L   G + V++FHSLEDRL K+ F   S   +              F+ +++K ++P++E
Sbjct: 236 LALEGRISVITFHSLEDRLTKQLFKEASVVDVPKGLPFIPEEMQPKFELVSRKPILPSKE 295

Query: 299 DVAFNRRSRSAKLRAGMRTV 318
           ++A N R+ SAKLR   +  
Sbjct: 296 ELAENNRAHSAKLRVAKKIR 315


>gi|223041547|ref|ZP_03611748.1| S-adenosyl-methyltransferase MraW [Actinobacillus minor 202]
 gi|223017642|gb|EEF16052.1| S-adenosyl-methyltransferase MraW [Actinobacillus minor 202]
          Length = 314

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 121/320 (37%), Positives = 177/320 (55%), Gaps = 20/320 (6%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           MS  +H     H+ VLL + +  L   P  + +D TFG GG+SR           +IA D
Sbjct: 1   MSDTLH----KHITVLLHEAVEGLAIKPNGIYIDGTFGRGGHSRLILSKLNEQGRLIATD 56

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCG 121
           RDP A++           +F +    FS +     D G    +DG++ DLGVSS Q+D  
Sbjct: 57  RDPRAIAEAHTI---TDPRFQIVHTAFSAIPQVCEDLGLIGKIDGILLDLGVSSPQLDDA 113

Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF + GPLDMRM  S G+SA++ ++Q +V+DL  +L   GEE+ A RIA AIV   
Sbjct: 114 ERGFSFMRDGPLDMRMDTSKGLSAAEWLDQVSVEDLAWVLKEFGEERFAKRIATAIVNFN 173

Query: 181 QS--APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           ++       T  L+ +I   V F K+   HPATRSFQA+RIF+N+E++EL + L SA   
Sbjct: 174 KTSGQKITRTLQLAQIISDAVPF-KDKHKHPATRSFQAIRIFINSELDELEKALNSALSV 232

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPT 296
           L   G L ++SFHSLEDR+VK+F    S      R   ++ ++ +  +      K ++P+
Sbjct: 233 LAPEGRLSIISFHSLEDRMVKQFMKKNSKGKEVPRGLPILEADLNKDIPLKTIGKAIMPS 292

Query: 297 QEDVAFNRRSRSAKLRAGMR 316
           + ++  N RSRSA LR   +
Sbjct: 293 EAEIEANPRSRSAVLRVAEK 312


>gi|221133797|ref|ZP_03560102.1| S-adenosyl-methyltransferase MraW [Glaciecola sp. HTCC2999]
          Length = 310

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 119/307 (38%), Positives = 176/307 (57%), Gaps = 13/307 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VLL + I  L   P  + +DATFG GG+S            +IA DRDP A+   Q+
Sbjct: 6   HTSVLLHECIEGLAIKPDGIYIDATFGRGGHSSYILNALGEHGRLIAFDRDPAAIEAAQK 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            + D   +F++  + F+Q+ +     G    VDGV+ DLGVSS Q+D   RGFSF + GP
Sbjct: 66  FVND--PRFTIVHSAFAQMDEVPLTAGLIDQVDGVLMDLGVSSPQLDDSSRGFSFLRDGP 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G+SA   +  A+ +D+ +++   GEEK   RIAHAIV  R   P  +T  L
Sbjct: 124 LDMRMDTSTGVSAEQWLAHADEQDIAQVIKEFGEEKFGKRIAHAIVNTRVHTPINSTLQL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           +++I + +   K+   HPATR+FQ +RI++N+E+++L  GL++A K LK  G L  +SFH
Sbjct: 184 AAIIAEAMPV-KDKHKHPATRAFQGIRIYINSELDQLRDGLKAAVKLLKPTGRLAAISFH 242

Query: 252 SLEDRLVKKFFASRS--GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK+F   +S    V     ++ +         +  K + P+ E+V+ N RSRS+
Sbjct: 243 SLEDRMVKRFMREQSKGKNVPHNMPILQAEIDADKVLKLIGKAIKPSDEEVSNNPRSRSS 302

Query: 310 KLRAGMR 316
            LR   +
Sbjct: 303 VLRVAEK 309


>gi|295102284|emb|CBK99829.1| S-adenosyl-methyltransferase MraW [Faecalibacterium prausnitzii
           L2-6]
          Length = 322

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 113/316 (35%), Positives = 172/316 (54%), Gaps = 12/316 (3%)

Query: 11  SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-----KMGSNVIALD 65
           +       +H+PVLL + +  LN  P    LD T G  G+SR          G  +++LD
Sbjct: 8   AQFDPASFEHIPVLLNECLDGLNIDPAGTYLDGTAGGAGHSRQIALRLDGAKGGRLVSLD 67

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGD 122
           +DP AV   +  +       ++ Q  F      +   G+   +G + DLGVSS Q+D   
Sbjct: 68  QDPDAVQTARARLAGLPA--TVVQINFRYAGQALESLGIEKINGALLDLGVSSHQLDDAA 125

Query: 123 RGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           RGFS++   PLDMRMS  G +A+D+VN A+ ++L+RIL   GEE  A +IA  IV+ R++
Sbjct: 126 RGFSYRADAPLDMRMSQQGETAADLVNTASREELSRILRDYGEEPYAWQIAGRIVEARET 185

Query: 183 APFQTTQDLSSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
           AP +TT  L+ ++   +  ++  +  +P+ R+FQALRI VN+E++ L +GL +    L  
Sbjct: 186 APIETTLQLADIVAGAMPPAERRKNKNPSRRTFQALRIAVNHELDALEEGLDTIFDHLAP 245

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDV 300
           GG L V++FHSLEDRLVK  F   S          +      A  + IT+K +   ++++
Sbjct: 246 GGRLCVITFHSLEDRLVKNKFRRWSTACTCPPEFPVCVCGGKAKAKLITRKPIEADKQEL 305

Query: 301 AFNRRSRSAKLRAGMR 316
             NRRSRSA LR   +
Sbjct: 306 EENRRSRSAHLRVLEK 321


>gi|190149279|ref|YP_001967804.1| S-adenosyl-methyltransferase MraW [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|307262590|ref|ZP_07544221.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Actinobacillus pleuropneumoniae serovar 13 str. N273]
 gi|263446582|sp|B3GZK0|RSMH_ACTP7 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|189914410|gb|ACE60662.1| S-adenosyl-methyltransferase MraW [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|306872088|gb|EFN03801.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Actinobacillus pleuropneumoniae serovar 13 str. N273]
          Length = 313

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 120/316 (37%), Positives = 176/316 (55%), Gaps = 16/316 (5%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69
           ++ T+  H+ VLL + +  L   P  + +D TFG GG+SR           +IA DRDP 
Sbjct: 1   MNDTVHKHITVLLHEAVDGLAIKPSGIYIDGTFGRGGHSRLILSKLSEQGRLIATDRDPR 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGF 125
           A++           +F +    FS + D     G    +DG++ DLGVSS Q+D  +RGF
Sbjct: 61  AIAEANTI---DDTRFQIVHTAFSAIPDVCEQLGLTGKIDGILLDLGVSSPQLDDAERGF 117

Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA- 183
           SF + GPLDMRM  + G+SA++ + Q +  DL  +L   GEE+ A RIA A+V   +SA 
Sbjct: 118 SFMRDGPLDMRMDTTKGLSAAEWLAQVSADDLAWVLKTFGEERFAKRIAQAVVSYNKSAT 177

Query: 184 -PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
                T  L+ +I   V F K+   HPATRSFQA+RIF+N+E++EL + L+SA   L   
Sbjct: 178 DKISRTLQLAQIIADAVPF-KDKHKHPATRSFQAIRIFINSELDELEKALQSALSVLAPE 236

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300
           G L ++SFHSLEDR+VK+F    S    V     ++ S  +  +   I  K ++P++ ++
Sbjct: 237 GRLSIISFHSLEDRMVKQFMKKNSKGMDVPKGLPILESELNKNIPLKIIGKAIMPSEAEI 296

Query: 301 AFNRRSRSAKLRAGMR 316
             N RSRSA LR   +
Sbjct: 297 EANPRSRSAVLRIAEK 312


>gi|144897763|emb|CAM74627.1| Bacterial methyltransferase [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 328

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 139/319 (43%), Positives = 188/319 (58%), Gaps = 7/319 (2%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDP 68
           +         H+PVLL +V+  L P  G V++D TFGAGGYS +        V  +DRDP
Sbjct: 5   AQTPDSDSRPHIPVLLAEVVQALAPQDGDVMVDGTFGAGGYSLALLDCARIRVFGIDRDP 64

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGF 125
            A++ GQ   +    + S+ +  +  +   +P  G   VDG+  D+GVSSMQID  +RGF
Sbjct: 65  SAIAAGQRLPQAADGRLSVIEGRYGDMDLLLPQAGIARVDGIALDIGVSSMQIDQAERGF 124

Query: 126 SFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           SF K GPLDMRM  SG SA+DVVN A+  +L  I+  LGEEK A R+A AIV  R   PF
Sbjct: 125 SFAKDGPLDMRMEQSGPSAADVVNTASEAELADIIYHLGEEKYARRVARAIVAARLDTPF 184

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
             T  L+++I+  V     + I P+TR+FQALRI VN+E+ EL +GL +AE+ L  GG L
Sbjct: 185 TRTLQLANVIRGAV-RKSGDGIDPSTRTFQALRIHVNDELGELERGLEAAERLLAPGGRL 243

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITKKVVVPTQEDVAFN 303
            VV+FHSLEDR+VK F   RSG + A    +P+        F  I++K + P+  +   N
Sbjct: 244 AVVTFHSLEDRVVKTFLKKRSGDMPAPSRHLPAQAAGPAPTFSLISRKAIAPSDAECRAN 303

Query: 304 RRSRSAKLRAGMRTVERSI 322
            R+RSAKLRA +RT     
Sbjct: 304 PRARSAKLRAALRTDAAPW 322


>gi|27467772|ref|NP_764409.1| hypothetical protein SE0854 [Staphylococcus epidermidis ATCC 12228]
 gi|30173015|sp|Q8CSX7|RSMH_STAES RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|27315316|gb|AAO04451.1|AE016746_241 conserved hypothetical protein [Staphylococcus epidermidis ATCC
           12228]
 gi|329730036|gb|EGG66427.1| S-adenosyl-methyltransferase MraW [Staphylococcus epidermidis
           VCU144]
 gi|329736180|gb|EGG72452.1| S-adenosyl-methyltransferase MraW [Staphylococcus epidermidis
           VCU028]
          Length = 311

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 102/308 (33%), Positives = 163/308 (52%), Gaps = 9/308 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  HV V+L + I  LN     V +D T G  G++            +IA+D+D  A+  
Sbjct: 1   MFHHVSVMLNETIDYLNIKEDGVYVDCTLGGAGHALYLLNQLNDKGRLIAIDQDLTAIEN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E ++++  + +     F +L + + +   + VDG+ +DLGVSS Q+D  +RGFS+   
Sbjct: 61  AKEVLKEHLHKVTFVHNNFRELTNILNELEIEKVDGIYYDLGVSSPQLDVPERGFSYHND 120

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM  +  +SA +VVNQ + + L RI    GEEK + +IA  I   R+  P +TT 
Sbjct: 121 AKLDMRMDQTQSLSAYEVVNQWSYEALVRIFFRYGEEKFSKQIARRIEAHREQQPIETTL 180

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I++ +    +    HPA R FQA+RI VN+E+      +  A + +K GG + V+
Sbjct: 181 ELVDVIKEGIPAKARRKGGHPAKRVFQAIRIAVNDELSAFEDSVEQAIECVKVGGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F          R   +   A+    + + +K +  T +D+  N R+R
Sbjct: 241 TFHSLEDRLCKQIFQEFEKGPDVPRGLPVIPEAYTPKLKRVNRKPITATDDDLNENNRAR 300

Query: 308 SAKLRAGM 315
           SAKLR   
Sbjct: 301 SAKLRVAE 308


>gi|261338924|ref|ZP_05966782.1| hypothetical protein ENTCAN_05122 [Enterobacter cancerogenus ATCC
           35316]
 gi|288318749|gb|EFC57687.1| S-adenosyl-methyltransferase MraW [Enterobacter cancerogenus ATCC
           35316]
          Length = 313

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 120/312 (38%), Positives = 181/312 (58%), Gaps = 19/312 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++  Q
Sbjct: 6   KHTTVLLDEAVNGLNIRPDGIYVDGTFGRGGHSRLILSQLGAEGRLLAIDRDPQAIAVAQ 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +FS+    FS L DYV ++G    +DG++ DLGVSS Q+D  +RGFSF + G
Sbjct: 66  TI---DDPRFSIVHGPFSALADYVAERGLTGKIDGILLDLGVSSPQLDDAERGFSFMRDG 122

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + G SA++ +  A+  D+  ++   GEE+   RIA AIV+R +  P   T++
Sbjct: 123 PLDMRMDPTRGQSAAEWLQTADEADIAWVIKTFGEERFGKRIARAIVERNRIEPMTRTKE 182

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ +I       K+   HPATR+FQA+RI+VN+E+EE+   L+S+   L  GG L V+SF
Sbjct: 183 LAEVIAAATPV-KDKHKHPATRTFQAVRIWVNSELEEIELALKSSLDVLAPGGRLSVISF 241

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305
           HSLEDR+VK+F   +S        +  +    +       +++ K  ++P +E+VA N R
Sbjct: 242 HSLEDRIVKRFMREQSRGPQVPAGLPMTEEQLSKLGGRQLRALGK--LMPGEEEVAENPR 299

Query: 306 SRSAKLRAGMRT 317
           +RS+ LR   RT
Sbjct: 300 ARSSVLRVAERT 311


>gi|260428345|ref|ZP_05782324.1| S-adenosyl-methyltransferase MraW [Citreicella sp. SE45]
 gi|260422837|gb|EEX16088.1| S-adenosyl-methyltransferase MraW [Citreicella sp. SE45]
          Length = 330

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 145/326 (44%), Positives = 201/326 (61%), Gaps = 6/326 (1%)

Query: 11  SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPF 69
           +A       HVPVLL  ++  + P      +D TFGAGGYSR   + G+  VI +DRDP 
Sbjct: 4   AADTSDNAPHVPVLLRPLLDAVAPVS-GTWVDGTFGAGGYSRGLLEAGADRVIGIDRDPL 62

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
           A     E +  Y  +  L +  F+ +  YV   G DGVV DLGVSSMQ+D  +RGFSFQ+
Sbjct: 63  AHRMAAEWIGSYGGRLELVEGNFADMDQYV--SGADGVVLDLGVSSMQLDIAERGFSFQR 120

Query: 130 SGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            GPLDMRM  +G SA+++V + +   L  +L   GEE+ + RIA AIVK R+  P +TT 
Sbjct: 121 DGPLDMRMEQAGESAAELVKRLDETTLADVLYTYGEERASRRIARAIVKAREQEPIETTA 180

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            LS++++  +   K  + HPATRSFQALRI VN+E   L +GL +AEKALK GG L VV+
Sbjct: 181 RLSAIVEACLPRPKPGQSHPATRSFQALRIAVNDEYGALWRGLMAAEKALKPGGFLCVVT 240

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHS+EDR+VK+F  +RSG++ AV    P   A    F ++T+K + P  +++A N RSRS
Sbjct: 241 FHSVEDRMVKRFLQARSGRLGAVSRYAPVVEAEEPQFVTMTRKAIGPDDDELAANPRSRS 300

Query: 309 AKLRAGMRTVERSIE-DDSFVHLPRL 333
           A+LR G RT     +     +++P+L
Sbjct: 301 ARLRIGQRTSADPGDVSPDTLNMPQL 326


>gi|330686332|gb|EGG97937.1| S-adenosyl-methyltransferase MraW [Staphylococcus epidermidis
           VCU121]
          Length = 311

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 98/308 (31%), Positives = 160/308 (51%), Gaps = 9/308 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H+ V+L + I  LN     V +D T G  G++            +IA+D+D  A+  
Sbjct: 1   MFHHISVMLNETIDYLNIKEDGVYVDCTLGGAGHALYLLNQLSDEGRLIAIDQDLTAIEN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            ++ ++++  + +   + F +L   + +   + VDG+ +DLGVSS Q+D  +RGFS+   
Sbjct: 61  AKDVLKEHLHKVTFIHSNFRELTQILNELNIEKVDGIYYDLGVSSPQLDVPERGFSYHHD 120

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM  +  +SA +VVN+   + L +I    GEEK + +IA  I   R+  P +TT 
Sbjct: 121 AKLDMRMDQTQSLSAYEVVNEWPYEALVKIFYRYGEEKFSKQIARRIEANREKQPIETTL 180

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I++ +    +    HPA R FQA+RI VN+E+      +  A   +K  G + V+
Sbjct: 181 ELVEVIKEGIPAKARRKGGHPAKRVFQAIRIAVNDELSAFEDSIEQAIGLVKVNGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F          R   +   A+    + + +K +  T ED+  N R+R
Sbjct: 241 TFHSLEDRLCKQMFQEYEKGPDVPRGLPVIPEAYTPKLKRVNRKPITATDEDLDDNNRAR 300

Query: 308 SAKLRAGM 315
           SAKLR   
Sbjct: 301 SAKLRIAE 308


>gi|157826956|ref|YP_001496020.1| S-adenosyl-methyltransferase MraW [Rickettsia bellii OSU 85-389]
 gi|167011836|sp|A8GVV6|RSMH_RICB8 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|157802260|gb|ABV78983.1| S-adenosyl-methyltransferase MraW [Rickettsia bellii OSU 85-389]
          Length = 305

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 127/304 (41%), Positives = 182/304 (59%), Gaps = 5/304 (1%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQE 76
             H+PV+L +++  L P  G+  LD TFGAGGYS++  +     V ALDRDP  +   +E
Sbjct: 3   QPHIPVMLNEMLKFLAPKAGESYLDCTFGAGGYSKALLENCDCYVTALDRDPNVIKKAEE 62

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
              +YK++F   +  F      +  K  DG+V DLGVSSMQ+D  DRGFSF   GPLDMR
Sbjct: 63  IKHNYKDRFDFVETNFGNCFAKLESKKFDGIVLDLGVSSMQLDIPDRGFSFLHDGPLDMR 122

Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
           MS  G+SA + +N A  KDL  ++   G+E  + RIA  IV+ R++A   +T  L+ ++ 
Sbjct: 123 MSGQGLSAEEFINTAEEKDLADVIYKYGDETFSRRIAKKIVEVRKAARIDSTGKLADIVH 182

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
             + F K  +I PAT++FQA+RI++NNE+ EL Q L + +  LK  G L+VVSFHSLEDR
Sbjct: 183 SCIGFRK-GKIDPATKTFQAIRIYINNELGELEQFLANVKNILKKDGRLVVVSFHSLEDR 241

Query: 257 LVKKFFASRSGKVMAVRHMIPSN---AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           +VK FF   S K +A       +         + IT K  +P+ ++++ N R+RSAKLRA
Sbjct: 242 IVKNFFKENSEKPVARSKYAKEDIMLNPDKWLKIITNKAEIPSDKEISLNVRARSAKLRA 301

Query: 314 GMRT 317
             + 
Sbjct: 302 AKKI 305


>gi|307244811|ref|ZP_07526910.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|307253765|ref|ZP_07535619.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|307258222|ref|ZP_07539965.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
 gi|306854256|gb|EFM86462.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|306863249|gb|EFM95189.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306867682|gb|EFM99527.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
          Length = 313

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 118/316 (37%), Positives = 175/316 (55%), Gaps = 16/316 (5%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69
           ++ T+  H+ VLL + +  L   P  + +D TFG GG+SR           +IA DRDP 
Sbjct: 1   MNDTVHKHITVLLHEAVDGLAIKPNGIYIDGTFGRGGHSRLILSKLSEQGRLIATDRDPR 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGF 125
           A++           +F +    FS + D     G    +DG++ DLGVSS Q+D  +RGF
Sbjct: 61  AIAEANTI---DDTRFQIEHTAFSAIPDVCEQLGLTGKIDGILLDLGVSSPQLDDAERGF 117

Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ--S 182
           SF + GPLDMRM  + G+SA++ + Q +  DL  +L   GEE+ A RIA A+V   +  +
Sbjct: 118 SFMRDGPLDMRMDTTKGLSAAEWLAQVSADDLAWVLKTFGEERFAKRIAQAVVSYNKSAT 177

Query: 183 APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
                T  L+ +I   V F K+   HPATRSFQA+RIF+N+E++EL + L+SA   L   
Sbjct: 178 NKISRTLQLAQIIADAVPF-KDKHKHPATRSFQAIRIFINSELDELEKALQSALSVLAPE 236

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300
           G L ++SFHSLEDR+VK+F    S    V     ++ S  +  +   I  K ++P++ ++
Sbjct: 237 GRLSIISFHSLEDRMVKQFMKKNSKGMDVPKGLPILESELNKNIPLKIIGKAIMPSEAEI 296

Query: 301 AFNRRSRSAKLRAGMR 316
             N RSRSA LR   +
Sbjct: 297 EANPRSRSAVLRIAEK 312


>gi|303240801|ref|ZP_07327314.1| S-adenosyl-methyltransferase MraW [Acetivibrio cellulolyticus CD2]
 gi|302591689|gb|EFL61424.1| S-adenosyl-methyltransferase MraW [Acetivibrio cellulolyticus CD2]
          Length = 313

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 104/309 (33%), Positives = 165/309 (53%), Gaps = 11/309 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
           +H PVL E+ I  L+  P  V +D T G  G+S +  +       +I LD+D FA+   +
Sbjct: 4   EHKPVLFEECIENLDIKPDGVYVDGTLGGAGHSSAIYQKLGEKGMLIGLDQDGFALETSK 63

Query: 76  ETMRDYKEQ--FSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           + + D   +         F  ++    +     VDG++ DLGVSS Q+D  +RGFS+ K 
Sbjct: 64  KRLEDQNGKGSLIFANTNFVNIKSVCFENKIACVDGILLDLGVSSHQLDEAERGFSYNKD 123

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM      +A  +VN+ + +++ +I+   GEE  ASRIA  IV+RR     +TT 
Sbjct: 124 APLDMRMDRRQKFTAETIVNEYSKEEIKKIIREFGEENWASRIAEFIVQRRDEKRIETTG 183

Query: 190 DLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I+  +   ++    HPA R+FQALRI VN+E+  L++ +      LK GG   ++
Sbjct: 184 ELVEIIKAAIPSSARREGPHPAKRTFQALRIAVNDELGILSKAIEEGVNLLKPGGRFCII 243

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+VK  F              +       + +S+ +K +VP+ +++  N R+R
Sbjct: 244 TFHSLEDRIVKNEFNKYINPCTCPSTFPVCVCGKKKLAESVHRKPIVPSVKELEENPRAR 303

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 304 SAKLRVLEK 312


>gi|299131933|ref|ZP_07025128.1| S-adenosyl-methyltransferase MraW [Afipia sp. 1NLS2]
 gi|298592070|gb|EFI52270.1| S-adenosyl-methyltransferase MraW [Afipia sp. 1NLS2]
          Length = 333

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 144/330 (43%), Positives = 201/330 (60%), Gaps = 5/330 (1%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAV 71
           +      H+ VL  + +  L P  G + +DATFGAGGYS+   +  G+ VI +DRD  AV
Sbjct: 1   MSTASSRHISVLGREAVEFLAPHAGGIYVDATFGAGGYSKRILEVAGTRVIGIDRDRTAV 60

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQ 128
           +   + +   + + ++ Q  FS L +    +G   VDG+V D+GVSSMQ+D  +RGFSF+
Sbjct: 61  AEAFDLVERAEGRLTVVQDRFSNLAEVCAAEGAPQVDGIVMDIGVSSMQLDRAERGFSFR 120

Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             G LDMRM   G SA+DVV  A+ KDL  I+ I GEE+ +  +A AIVK RQ  P  TT
Sbjct: 121 HDGALDMRMGQEGASAADVVAVASEKDLANIIYIFGEERHSRAVARAIVKARQDNPIVTT 180

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           + L+ ++   V  ++ N IHPATR+FQALRIF+N E++EL   L ++E+ALK GG L+VV
Sbjct: 181 KALADIVSSVV-RARPNEIHPATRTFQALRIFINEELDELQTALHASERALKPGGRLVVV 239

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDR+VK F ASR+ +    RH+         F+ +TK+ VV    + A N R+RS
Sbjct: 240 SFHSLEDRIVKNFLASRAKQGGGSRHLPEVEQIAPSFEILTKRPVVANDNETAVNPRARS 299

Query: 309 AKLRAGMRTVERSIEDDSFVHLPRLPTLSQ 338
           AKLRA  RT   S  +D     P L ++ +
Sbjct: 300 AKLRAAQRTANPSHHEDMSFDWPTLRSVMK 329


>gi|315918163|ref|ZP_07914403.1| S-adenosyl-methyltransferase mraW [Fusobacterium gonidiaformans
           ATCC 25563]
 gi|313692038|gb|EFS28873.1| S-adenosyl-methyltransferase mraW [Fusobacterium gonidiaformans
           ATCC 25563]
          Length = 318

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 110/320 (34%), Positives = 179/320 (55%), Gaps = 12/320 (3%)

Query: 9   MSSAIHHTIGD--HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIA 63
           M       IG+  H+PVL E+ +  L   P  + +D T G G +S    K       +I+
Sbjct: 1   MGEKDMQEIGNEYHIPVLYEETLDQLVWNPDGIYIDCTLGGGSHSEGILKRLSEKGRLIS 60

Query: 64  LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ--DYVPD-KGVDGVVFDLGVSSMQIDC 120
           +D+D  A++  ++ +  + +Q+S+FQ  F  +    Y+     VDG++ D+GVSS Q+D 
Sbjct: 61  IDQDANAIAFCKKRLEKHGKQWSVFQNNFENIDIVSYLAGVDKVDGILMDIGVSSTQLDD 120

Query: 121 GDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
           G+RGFS++    LDMRM+    +SA +VVN    +DL RIL   GEE+ A +IA  I + 
Sbjct: 121 GERGFSYRYDAKLDMRMNKEQDLSAYEVVNTYAEQDLVRILFEYGEERHAKKIASFICEN 180

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
           R+  P +TT +L ++I++   +S+    HPA ++FQA+RI VN E+E L + ++ +   L
Sbjct: 181 RKEKPIETTGELVAIIKRA--YSERASKHPAKKTFQAIRIEVNRELEVLEKAIQKSVDLL 238

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQE 298
           K  G L +++FHSLEDRLVK  F   +          +      A  + +TKK ++P+++
Sbjct: 239 KPKGHLAIITFHSLEDRLVKTVFKDLATACKCPPELPVCVCGGKAKVKILTKKPIIPSED 298

Query: 299 DVAFNRRSRSAKLRAGMRTV 318
           ++  N R+ S+KLR   R  
Sbjct: 299 ELGKNNRAHSSKLRVVERLA 318


>gi|222153542|ref|YP_002562719.1| S-adenosyl-methyltransferase MraW [Streptococcus uberis 0140J]
 gi|262825652|sp|B9DV78|RSMH_STRU0 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|222114355|emb|CAR43080.1| S-adenosyl-methyltransferase MraW [Streptococcus uberis 0140J]
          Length = 316

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 103/320 (32%), Positives = 168/320 (52%), Gaps = 15/320 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M+   H     H+ VLL + + +L+  P  + +DAT G  G+S           ++   D
Sbjct: 1   MTKEFH-----HITVLLHETVDMLDIKPDGIYVDATLGGAGHSSYLLSKLNDNGHLYCFD 55

Query: 66  RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120
           +D  A+   Q  ++ Y ++   +  +A F  L+  +   GV   DG+++DLGVSS Q+D 
Sbjct: 56  QDQKAIDNAQVFLKSYVDRGMVTFIKANFRHLKSELNALGVTEIDGILYDLGVSSPQLDE 115

Query: 121 GDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS+++  PLDMRM     ++A  VVN    +DL RI    GE+K + +IA  I + 
Sbjct: 116 RERGFSYKQDAPLDMRMDSDAALTAYHVVNDYPFQDLVRIFFKYGEDKFSKQIARKIEQA 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R   P +TT +L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   
Sbjct: 176 RAIKPIETTAELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQEAMTM 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L   G + V++FHSLEDRL K+ F   S   +              F+ +T+K ++P+QE
Sbjct: 236 LALNGRISVITFHSLEDRLTKQLFKEASTVDVPKGIPFIPEDMQPKFELVTRKPILPSQE 295

Query: 299 DVAFNRRSRSAKLRAGMRTV 318
           ++  N R+ SAKLR   +  
Sbjct: 296 ELLANNRAHSAKLRVARKVR 315


>gi|171913327|ref|ZP_02928797.1| S-adenosyl-methyltransferase MraW [Verrucomicrobium spinosum DSM
           4136]
          Length = 331

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 132/304 (43%), Positives = 178/304 (58%), Gaps = 9/304 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+PVL  +V+A L PAPGKVILD T G GG++    + G+ VI LD+D  A+S   E ++
Sbjct: 27  HLPVLPAEVVAALAPAPGKVILDGTLGGGGHTSLLLQAGAEVIGLDQDTDALSHAGERLK 86

Query: 80  DYK--EQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
            Y    QF   Q+ F      +   G+   DG++ DLGVSS Q+D   RGFSF   GPLD
Sbjct: 87  AYAATGQFRSVQSNFRDFPAVLQALGITALDGLLVDLGVSSYQLDVASRGFSFMHEGPLD 146

Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM+  G  +A+D+VN+    +L RIL   GEE+Q+ RI  A+V+RR+  PF TT DL+S
Sbjct: 147 MRMNTGGGRTAADLVNEDEPAELERILWEYGEERQSRRIVRALVQRREQRPFTTTSDLAS 206

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
            I   +   +  + HPAT +FQ LRI VN+E+  LA  L +A   LK GG L V+SFHSL
Sbjct: 207 AIAGVIP--RRGKTHPATLTFQGLRIAVNDELAALADFLHAAPAWLKPGGRLAVISFHSL 264

Query: 254 EDRLVKKFFASRSGKVM-AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           EDR+VK+ F   S + +       P        + + +K    T E+V  N RSRSAKLR
Sbjct: 265 EDRMVKQAFQRLSTEWLDRPEWPEPRRNPEHCLRLLHRKPQEATDEEVKRNPRSRSAKLR 324

Query: 313 AGMR 316
              +
Sbjct: 325 TAEK 328


>gi|282882847|ref|ZP_06291452.1| S-adenosyl-methyltransferase MraW [Peptoniphilus lacrimalis 315-B]
 gi|281297258|gb|EFA89749.1| S-adenosyl-methyltransferase MraW [Peptoniphilus lacrimalis 315-B]
          Length = 320

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 117/317 (36%), Positives = 177/317 (55%), Gaps = 10/317 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
            HV VL  +V+  LN    K+ +DAT G  G+S+   K+ +N   +I +D+D  A+   Q
Sbjct: 4   KHVSVLYNEVLENLNIRENKIYMDATIGGAGHSKGIAKILNNSGLLIGIDQDKDAIKKSQ 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E + +Y E   LF   +   ++ +     K VDG++ DLGVSS Q D G+RGFS++    
Sbjct: 64  EVLSEY-ENVKLFNTNYKNFEEILDSLHIKKVDGILLDLGVSSYQFDKGERGFSYRFDSE 122

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S  ++A  +VN+ +  +L RI+   GEE  A RI+  IV+ R+     TT DL
Sbjct: 123 LDMRMDKSSPLTAKTIVNEYSKDELYRIIKEYGEENWAKRISEFIVQERKIKKINTTFDL 182

Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+K V   ++ +  HPA R+FQALRI VN+E+  L + +    + L  GG L ++SF
Sbjct: 183 VEVIKKAVPKGARRDGPHPAKRAFQALRIEVNDELNVLKKSIYKFVERLNPGGRLAIISF 242

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  F       +     +I +       + IT+K +VPT+E++  N RS SA
Sbjct: 243 HSLEDRIVKNAFRYLYSDCVCPPEQIICTCDKKREIEIITRKPIVPTKEEIKNNNRSHSA 302

Query: 310 KLRAGMRTVERSIEDDS 326
           KLR   +      E+++
Sbjct: 303 KLRVAEKLEVSHDEENN 319


>gi|257791849|ref|YP_003182455.1| S-adenosyl-methyltransferase MraW [Eggerthella lenta DSM 2243]
 gi|257475746|gb|ACV56066.1| S-adenosyl-methyltransferase MraW [Eggerthella lenta DSM 2243]
          Length = 318

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 117/311 (37%), Positives = 179/311 (57%), Gaps = 14/311 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H PVLL + +   N  P    +DAT G  G+S    K+   G  +I +D+D  A++  + 
Sbjct: 7   HTPVLLAECLEYSNLKPQHTFVDATLGGAGHSFEAAKLIGSGGTLIGIDQDEVALAAARR 66

Query: 77  TM----RDYKEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
            +     D + +  L +  F  + + +      GVD V+FDLGVSS+QID   RGFSF++
Sbjct: 67  KLGTLPDDVRPRLELVRGNFGNMDEALLSTEVPGVDAVLFDLGVSSVQIDTPSRGFSFKE 126

Query: 130 SGPLDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           +GPLDMRM      ++A++++N     DLTRI+    +EK ASRIA   V+ RQ+AP +T
Sbjct: 127 NGPLDMRMDPGKQTLTAAEIINTYTAADLTRIIRTYSDEKWASRIADFAVRARQTAPIET 186

Query: 188 TQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           ++ L  +I+  +   ++    HPA R+FQALRI VN E++ L  GL +A + L  GG L+
Sbjct: 187 SEQLVDIIKAAIPASARRAGGHPAKRTFQALRIEVNGELDVLRSGLDAAIRWLNPGGRLV 246

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           V+S+HSLEDR+VK+ FA  + +        +       +   +T+K V+PT E++  N R
Sbjct: 247 VISYHSLEDRIVKETFAKFANRCTCPPDLPVCMCGKQPILDIVTRKPVLPTAEEIERNAR 306

Query: 306 SRSAKLRAGMR 316
           +RSAKLR   +
Sbjct: 307 ARSAKLRVAQK 317


>gi|225375622|ref|ZP_03752843.1| hypothetical protein ROSEINA2194_01247 [Roseburia inulinivorans DSM
           16841]
 gi|225212601|gb|EEG94955.1| hypothetical protein ROSEINA2194_01247 [Roseburia inulinivorans DSM
           16841]
          Length = 312

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 102/309 (33%), Positives = 173/309 (55%), Gaps = 10/309 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQ 75
           +H  VLL + I  LN  P  + +D T G GG++            +I +D+D  A++   
Sbjct: 4   NHYSVLLNETIENLNIKPDGIYVDGTLGGGGHAYQVASRLSEKGRLIGIDQDADAIAAAG 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQ-KSG 131
           E ++++ ++ ++ ++ ++ +++ +   GV   DG+V DLGVSS Q+D  +RGF+++ ++ 
Sbjct: 64  ERLKEFGDKITIIRSNYANMKEELHRIGVEKVDGIVLDLGVSSFQLDTLERGFTYRDENA 123

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM     ++A D+VN  +  DL RI+   GE+K A  IA  IV+ R   P +TT +
Sbjct: 124 PLDMRMDDRQSLTAKDIVNGYSEMDLYRIIRDYGEDKFAKNIAKHIVQERAKKPIETTGE 183

Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I+ ++    +    HPA R+FQA+RI +N E+E L   L      L  GG + +++
Sbjct: 184 LTEIIRASIPMKVQVTGGHPAKRTFQAIRIELNKELEVLQNNLDDMIDLLNPGGRICIIT 243

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK  F              +      +  + +T+K ++P++E++  N RS+S
Sbjct: 244 FHSLEDRIVKTNFKRNENPCTCPSDFPVCVCGKKSKGKVVTRKPILPSEEELEVNSRSKS 303

Query: 309 AKLRAGMRT 317
           AKLR   R 
Sbjct: 304 AKLRVFERV 312


>gi|15902346|ref|NP_357896.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae R6]
 gi|116515442|ref|YP_815821.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae D39]
 gi|225853917|ref|YP_002735429.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae JJA]
 gi|30315982|sp|P59658|RSMH_STRR6 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|122279293|sp|Q04MC7|RSMH_STRP2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262825666|sp|C1CCA8|RSMH_STRZJ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|1524350|emb|CAB01927.1| OrfD [Streptococcus pneumoniae]
 gi|15457856|gb|AAK99106.1| YllC protein [Streptococcus pneumoniae R6]
 gi|116076018|gb|ABJ53738.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae D39]
 gi|225724201|gb|ACO20054.1| S-adenosyl-methyltransferase MraW [Streptococcus pneumoniae JJA]
          Length = 316

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 106/319 (33%), Positives = 170/319 (53%), Gaps = 15/319 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M+   H     HV VLL + I +L+  P  + +DAT G  G+S           ++ A D
Sbjct: 1   MTKEFH-----HVTVLLHETIDMLDVKPEGIYVDATLGGAGHSEYLLSKLSEKGHLYAFD 55

Query: 66  RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120
           +D  A+   Q+ +  Y E+   +  +  F  LQ  + + GV   DG+ +DLGVSS Q+D 
Sbjct: 56  QDQNAIDNAQKRLAPYIEKGMVTFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQ 115

Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS++K  PLDMRM+    ++A +VVN  +  DL RI    GE+K + +IA  I + 
Sbjct: 116 RERGFSYKKDAPLDMRMNQDASLTAYEVVNHYDYHDLVRIFFKYGEDKFSKQIARKIEQA 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R+  P +TT +L+ +I+      +   + HPA + FQA+RI VN+E+    + ++ A   
Sbjct: 176 REVKPIETTTELAEIIKLVKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDM 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L   G + V++FHSLEDRL K+ F   S   +        +      + +++K ++P+ E
Sbjct: 236 LALDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAE 295

Query: 299 DVAFNRRSRSAKLRAGMRT 317
           ++  N RS SAKLR   + 
Sbjct: 296 ELEANNRSHSAKLRVVRKI 314


>gi|251810609|ref|ZP_04825082.1| S-adenosyl-methyltransferase [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|282876390|ref|ZP_06285257.1| S-adenosyl-methyltransferase MraW [Staphylococcus epidermidis
           SK135]
 gi|251805769|gb|EES58426.1| S-adenosyl-methyltransferase [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|281295415|gb|EFA87942.1| S-adenosyl-methyltransferase MraW [Staphylococcus epidermidis
           SK135]
 gi|329734446|gb|EGG70759.1| S-adenosyl-methyltransferase MraW [Staphylococcus epidermidis
           VCU045]
          Length = 311

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 102/308 (33%), Positives = 163/308 (52%), Gaps = 9/308 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  HV V+L + I  LN     V +D T G  G++            +IA+D+D  A+  
Sbjct: 1   MFHHVSVMLNETIDYLNIKEDGVYVDCTLGGAGHALYLLNQLNDKGRLIAIDQDLTAIEN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E ++++  + +     F +L + + +   + VDG+ +DLGVSS Q+D  +RGFS+   
Sbjct: 61  AKEVLKEHLHKVTFVHNNFRELTNILNELEIEKVDGIYYDLGVSSPQLDVPERGFSYHND 120

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM  +  +SA +VVNQ + + L RI    GEEK + +IA  I   R+  P +TT 
Sbjct: 121 AKLDMRMDQTQSLSAYEVVNQWSYEALVRIFFRYGEEKFSKQIARRIEAHREQQPIETTL 180

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I++ +    +    HPA R FQA+RI VN+E+      +  A + +K GG + V+
Sbjct: 181 ELVDVIKEGIPAKARRKGGHPAKRVFQAIRIAVNDELSAFEDSVEQAIECVKVGGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F          R   +   A+    + + +K +  T +D+  N R+R
Sbjct: 241 TFHSLEDRLCKQIFQEFEKGPDVPRGLPVIPEAYTPKLKRVNRKPITATDDDLNDNNRAR 300

Query: 308 SAKLRAGM 315
           SAKLR   
Sbjct: 301 SAKLRVAE 308


>gi|296329280|ref|ZP_06871781.1| S-adenosyl-methyltransferase MraW [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|296153636|gb|EFG94453.1| S-adenosyl-methyltransferase MraW [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 314

 Score =  372 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 106/308 (34%), Positives = 172/308 (55%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+PVL  + +  L   P    +D T G G +S    +  S+   +I++D+D  A+   ++
Sbjct: 9   HIPVLYYETLDNLVINPDGTYIDCTLGGGSHSEGILERLSDKGLLISIDQDTNAIVYSKK 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  +  ++ +F+  F  +       GVD   G++ D+GVSS Q+D  +RGFS++    L
Sbjct: 69  RLEKFGSKWKVFKGNFENIDTIAYMAGVDKVDGILMDIGVSSKQLDDPERGFSYRYDVKL 128

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+    ISA DVVN  + + L++I+   GEE+ A +IA  IV+ R+S+P + T DL 
Sbjct: 129 DMRMNTDQKISAYDVVNTYSEEQLSKIIFEYGEERHARKIAKLIVEERKSSPIEKTSDLI 188

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +LI++     +    HPA ++FQA+RI VN E+E L   +  A + LK GG L +++FHS
Sbjct: 189 ALIKRAYP--ERASKHPAKKTFQAIRIEVNRELEVLENAMSKATELLKVGGRLAIITFHS 246

Query: 253 LEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK  F   +      +   I        F+ ITKK ++P  +++  N R+ S+KL
Sbjct: 247 LEDRIVKNKFKDLATACKCPKDIPICVCGGVKKFEVITKKPIIPIDDELKNNNRAHSSKL 306

Query: 312 RAGMRTVE 319
           R   R ++
Sbjct: 307 RILERILD 314


>gi|256545404|ref|ZP_05472767.1| S-adenosyl-methyltransferase MraW [Anaerococcus vaginalis ATCC
           51170]
 gi|256398965|gb|EEU12579.1| S-adenosyl-methyltransferase MraW [Anaerococcus vaginalis ATCC
           51170]
          Length = 306

 Score =  372 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 114/306 (37%), Positives = 166/306 (54%), Gaps = 12/306 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H  VLL + I  LN     +  D T G GG+S+   K  S    +I LD+D  A+   +E
Sbjct: 5   HKSVLLNETIENLNIKEDGIYADLTLGKGGHSKEILKKLSPNGLLIGLDQDKDAIKAARE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++D+      F   F  +++ + + G   +DG + D+GVSS QID GDRGFS+ K GPL
Sbjct: 65  NLKDF-SNVLYFNENFENIENVLDEAGFNRIDGALMDIGVSSYQIDNGDRGFSYMKDGPL 123

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  + ++A  +VN  ++ +L +I    GEE+ +  IA AIV  R+     TT  L 
Sbjct: 124 DMRMNKDNELTAKQIVNDYSLDELWKIFSEYGEERYSKTIAKAIVDYRKMHEINTTLQLR 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +++ K+V  S+    HP  R FQALRI VN E+E L   L      L   G L V++FHS
Sbjct: 184 NIVMKSVNTSEA---HPEKRVFQALRIEVNRELEVLENTLEKIVDRLNKNGRLCVITFHS 240

Query: 253 LEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK  F   S K +      +    H    + I+KK ++P+++++  N RS SAKL
Sbjct: 241 LEDRIVKNKFKEMSKKCICPPDFPVCVCNHEKKVKLISKKPILPSKDELKNNNRSHSAKL 300

Query: 312 RAGMRT 317
           R   R 
Sbjct: 301 RVCERI 306


>gi|223043777|ref|ZP_03613820.1| S-adenosyl-methyltransferase MraW [Staphylococcus capitis SK14]
 gi|222442874|gb|EEE48976.1| S-adenosyl-methyltransferase MraW [Staphylococcus capitis SK14]
          Length = 311

 Score =  372 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 99/308 (32%), Positives = 160/308 (51%), Gaps = 9/308 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  HV V+L + I  LN     V +D T G  G++            +IA+D+D  A+  
Sbjct: 1   MFHHVSVMLNETIDYLNIKEDGVYVDCTLGGAGHALYLLNQLNDEGRLIAIDQDLTALEN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +  ++++  + +     F +L + + D   + VDG+ +DLGVSS Q+D  +RGFS+   
Sbjct: 61  AKVVLKEHLHKVTFVHNNFRELTNILKDLNIEKVDGIYYDLGVSSPQLDVPERGFSYHHD 120

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM  +  +SA +VVN+ + + L +I    GEEK + +IA  I   R+  P +TT 
Sbjct: 121 AKLDMRMDQTQSLSAYEVVNEWSYEALVKIFYRYGEEKFSKQIARRIEANREQHPIETTL 180

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L  +I++ +    +    HPA R FQA+RI VN+E+      +  A +++   G + V+
Sbjct: 181 QLVDIIKEGIPAKARRKGGHPAKRVFQAIRIAVNDELSAFEDSIEQAIESVNVNGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F          R   I    +    + + +K +  T+ED+  N R+R
Sbjct: 241 TFHSLEDRLCKQIFQEYEKGPEVPRGIPIIPEGYSPKLKRVNRKPITATEEDLDENNRAR 300

Query: 308 SAKLRAGM 315
           SAKLR   
Sbjct: 301 SAKLRVAE 308


>gi|229815097|ref|ZP_04445434.1| hypothetical protein COLINT_02139 [Collinsella intestinalis DSM
           13280]
 gi|229809327|gb|EEP45092.1| hypothetical protein COLINT_02139 [Collinsella intestinalis DSM
           13280]
          Length = 325

 Score =  372 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 113/309 (36%), Positives = 173/309 (55%), Gaps = 12/309 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H PV+L++V+  L   PG V+ D T G  G+S    +   +   ++ +D+D  A++   +
Sbjct: 16  HEPVMLQEVLEQLQLKPGSVVCDCTLGGAGHSVRMAERVGSEGLLLGVDQDDMALAAAGK 75

Query: 77  TM--RDYKEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +          L +  F  L + +      GVDG +FDLGVSS Q+D   RGFS+ +  
Sbjct: 76  RLDAEAPDTPHKLLKGNFGDLDELLCSAQVPGVDGFLFDLGVSSPQLDIPGRGFSYNEDA 135

Query: 132 PLDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
           PLDMRM    + ++A++V+N     DL RIL I GEEK A +IA  +V+RRQ +P  +T 
Sbjct: 136 PLDMRMDPGTNTLNAAEVLNTYTEADLARILRIYGEEKFARQIAREVVRRRQESPLVSTG 195

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           D    I+  +  + + +  HPA RSFQA+RI VN+E++ L +GL +A + L  GG + V+
Sbjct: 196 DFVDAIKAGIPAAARRHGGHPAKRSFQAIRIEVNHELDVLERGLEAAIRWLNPGGRVCVI 255

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           S+HSLEDR+VK+ F   S          +    +  + +  T+K +V T E+V  N R+R
Sbjct: 256 SYHSLEDRIVKRLFQELSKGCTCPPDIPVCVCGNVPIVKVTTRKPLVATAEEVERNPRAR 315

Query: 308 SAKLRAGMR 316
           SAK+R   R
Sbjct: 316 SAKIRCAER 324


>gi|42559481|sp|Q8GE08|RSMH_HELMO RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|27262272|gb|AAN87417.1| methyltransferase [Heliobacillus mobilis]
          Length = 312

 Score =  372 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 116/309 (37%), Positives = 179/309 (57%), Gaps = 10/309 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            H+PVLLE+V+  L P P  + LD T G GG+S +  +       +I LD+DP A++  +
Sbjct: 4   HHIPVLLEEVLEALQPRPDGLYLDGTVGGGGHSAAILEKTAGQGRLIGLDQDPRALAAAR 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
             +  + +Q +L ++ F QL   V + G    +DG++ D+GVSS Q+D  +RGF+++   
Sbjct: 64  IKLEKFADQVTLVRSNFRQLGSVVEELGQKGKIDGILLDIGVSSHQLDEAERGFTYRAEA 123

Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+  G ++A+ ++N+    ++ RIL   GEE+ + RIA  IV RR   P  +T D
Sbjct: 124 PLDMRMNPDGAVTAAQILNEYPEGEIFRILWEYGEERWSKRIAQFIVNRRTEQPLASTTD 183

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I+  +  +      HPA R+FQALRI VN+E+  L + L +A  AL   G L V+S
Sbjct: 184 LVDVIRAAIPAAARQEGGHPAKRTFQALRIAVNDELGALQEALPAALDALAPSGRLAVIS 243

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK FFA ++          +      A  + IT+K +  ++E++  N RS+S
Sbjct: 244 FHSLEDRIVKNFFAEQAKGCTCPPDMPVCGCGKKARLKIITRKPITGSEEELKINPRSQS 303

Query: 309 AKLRAGMRT 317
           AKLR   + 
Sbjct: 304 AKLRVAQKI 312


>gi|148257427|ref|YP_001242012.1| S-adenosyl-methyltransferase MraW [Bradyrhizobium sp. BTAi1]
 gi|263445839|sp|A5EPL2|RSMH_BRASB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|146409600|gb|ABQ38106.1| S-adenosyl-dependent methyl transferase [Bradyrhizobium sp. BTAi1]
          Length = 331

 Score =  372 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 146/332 (43%), Positives = 196/332 (59%), Gaps = 9/332 (2%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRD 67
           MS+A       HVPVL  + +A+L P  G   +DATFGAGGY+R   +  G+ VI +DRD
Sbjct: 1   MSTADP----RHVPVLGPEAVAMLAPREGGTYIDATFGAGGYTRLILQSPGTRVIGIDRD 56

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRG 124
             A++ G   + +   + +L +  FS + D     G   VDG+V D+GVSSMQ+D   RG
Sbjct: 57  STAIAGGAALVAEAGARLTLVENRFSAIADICASLGLSQVDGIVMDVGVSSMQLDSAARG 116

Query: 125 FSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           FSF+  GPLDMRM  +G +A+DVV QA  +DL  I+ I GEE+ +  +A AIV  R+  P
Sbjct: 117 FSFRFDGPLDMRMGETGPTAADVVAQAAERDLADIIYIFGEERHSRAVARAIVAARKEQP 176

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
             TT+ L+ ++ + V  SK   IHPATR+FQ LRI VN E++EL Q L +AE+ L  GG 
Sbjct: 177 ITTTRQLADIVARVV-RSKPGDIHPATRTFQGLRILVNEELDELEQALSAAEQVLAPGGR 235

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           L VVSFHSLEDR+VK F A RS      RH+         FQ + +K VV  Q ++  N 
Sbjct: 236 LAVVSFHSLEDRIVKTFLAERSKTGGGSRHLPEIAQETPTFQLLNRKPVVADQSEIEANP 295

Query: 305 RSRSAKLRAGMRTVERSIEDDSFVHLPRLPTL 336
           R+RSAKLR   RT   +    +    PRL  +
Sbjct: 296 RARSAKLRGAERTAAPARLPPASSSWPRLADV 327


>gi|319408832|emb|CBI82489.1| S-adenosyl-methyltransferase [Bartonella schoenbuchensis R1]
          Length = 356

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 166/332 (50%), Positives = 222/332 (66%), Gaps = 6/332 (1%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCG 74
           +    H+PVLL+ V+A L P  G  ++D TFGAGGY+R+    G++VIALDRDP A+  G
Sbjct: 23  NETESHIPVLLQPVLAALVPLAGAKVIDGTFGAGGYTRALLDAGADVIALDRDPHAIREG 82

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           Q  +  +  +  L Q  FSQL D V ++ VD V+ D+GVSSMQ+D  +RGFSFQK GPLD
Sbjct: 83  QLLVDQFFPRLRLVQMEFSQL-DCVVEEKVDAVILDIGVSSMQLDEAERGFSFQKDGPLD 141

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRM+ +G +ASDVVN   V +L+ +  +LGEE+ A RIA  I KRR+  PF  T DL++ 
Sbjct: 142 MRMAQTGFTASDVVNCLKVNELSHMFRVLGEERHAGRIARMIEKRRRIRPFLRTCDLANA 201

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           I+  V     +RIHPATR FQALRI+VN+E+ EL +GL +AEK LKAGG L VVSFHSLE
Sbjct: 202 IEVLVGRKPGDRIHPATRVFQALRIYVNDELGELTRGLLAAEKVLKAGGRLGVVSFHSLE 261

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           DR+VKKFF++RSG+    R++    + PA F  + K V    +E+V  N R+RSAKLR G
Sbjct: 262 DRIVKKFFSARSGEGGRSRYLPEIKSSPATFLPLFKGVKTANEEEVQKNPRARSAKLRVG 321

Query: 315 MRTVE---RSIED--DSFVHLPRLPTLSQFRG 341
           +RT E   R+ ED   + + L  L  ++ F+G
Sbjct: 322 IRTQEDVIRTQEDVIKADMELFGLAEITSFKG 353


>gi|117620544|ref|YP_858331.1| S-adenosyl-methyltransferase MraW [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|263446603|sp|A0KPY0|RSMH_AERHH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|117561951|gb|ABK38899.1| S-adenosyl-methyltransferase MraW [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 312

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 120/313 (38%), Positives = 175/313 (55%), Gaps = 14/313 (4%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSC 73
             +H+ VLL + +  L   P  + +D TFG GG+SR   +       +IA+DRDP A++ 
Sbjct: 4   AAEHITVLLHEAVEGLAIKPDGIYVDGTFGRGGHSRLILQQLGPNGRLIAIDRDPQAIA- 62

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQK 129
             E  +    +F +    FS +  Y+ ++G    VDG + DLGVSS Q+D  +RGFSF K
Sbjct: 63  --EAAKIQDPRFEIVHGPFSGIASYLDERGLLGKVDGFLLDLGVSSPQLDDAERGFSFMK 120

Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM   SG SA++ + +A+V D+  +L   GEE+ A +IA AIV  R + P+  T
Sbjct: 121 DGPLDMRMDPTSGQSAAEWLARADVDDIAWVLKTFGEERFAKKIARAIVHDRVTEPYVRT 180

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           + L+ +I +    SK    H ATRSFQA+RI++N+E++E+   L  A + L   G L V+
Sbjct: 181 RQLAEMIARVNP-SKEKGKHAATRSFQAIRIYINSELDEIETALNGALQVLAPEGRLSVI 239

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI--TKKVVVPTQEDVAFNRRS 306
           SFHSLEDRLVK F             +  + A  A  + +    K + P++ +V  N RS
Sbjct: 240 SFHSLEDRLVKHFIRKHEKGPEVPHGIPLTEAQLAGGRKLKSVGKALKPSEHEVNENSRS 299

Query: 307 RSAKLRAGMRTVE 319
           RS+ LR   R  E
Sbjct: 300 RSSVLRVAQRLAE 312


>gi|325829899|ref|ZP_08163357.1| S-adenosyl-methyltransferase MraW [Eggerthella sp. HGA1]
 gi|325488066|gb|EGC90503.1| S-adenosyl-methyltransferase MraW [Eggerthella sp. HGA1]
          Length = 318

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 117/311 (37%), Positives = 179/311 (57%), Gaps = 14/311 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H PVLL + +   N  P    +DAT G  G+S    K+   G  +I +D+D  A++  + 
Sbjct: 7   HTPVLLAECLEYSNLKPQHTFVDATLGGAGHSFEAAKLIGSGGTLIGIDQDEVALAAARL 66

Query: 77  TM----RDYKEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
            +     D + +  L +  F  + + +      GVD V+FDLGVSS+QID   RGFSF++
Sbjct: 67  KLGTLPDDVRPRLELVRGNFGNMDEALLSTEVPGVDAVLFDLGVSSVQIDTPSRGFSFKE 126

Query: 130 SGPLDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           +GPLDMRM      ++A++++N     DLTRI+    +EK ASRIA   V+ RQ+AP +T
Sbjct: 127 NGPLDMRMDPGKQTLTAAEIINTYTAADLTRIIRTYSDEKWASRIADFAVRARQNAPIET 186

Query: 188 TQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           ++ L  +I+  +   ++    HPA R+FQALRI VN E++ L  GL +A + L  GG L+
Sbjct: 187 SEQLVDIIKAAIPASARRAGGHPAKRTFQALRIEVNGELDVLRSGLDAAIRWLNPGGRLV 246

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           V+S+HSLEDR+VK+ FA  + +        +       +   +T+K V+PT E++  N R
Sbjct: 247 VISYHSLEDRIVKETFAKFANRCTCPPDLPVCMCGKQPILDIVTRKPVLPTAEEIERNAR 306

Query: 306 SRSAKLRAGMR 316
           +RSAKLR   +
Sbjct: 307 ARSAKLRVAQK 317


>gi|117622368|ref|YP_851281.1| S-adenosyl-methyltransferase MraW [Escherichia coli APEC O1]
 gi|331640535|ref|ZP_08341683.1| S-adenosyl-methyltransferase MraW [Escherichia coli H736]
 gi|331645192|ref|ZP_08346303.1| S-adenosyl-methyltransferase MraW [Escherichia coli M605]
 gi|331650979|ref|ZP_08352007.1| S-adenosyl-methyltransferase MraW [Escherichia coli M718]
 gi|331671601|ref|ZP_08372399.1| S-adenosyl-methyltransferase MraW [Escherichia coli TA280]
 gi|331680655|ref|ZP_08381314.1| S-adenosyl-methyltransferase MraW [Escherichia coli H591]
 gi|115511492|gb|ABI99566.1| S-adenosyl-methyltransferase [Escherichia coli APEC O1]
 gi|331040281|gb|EGI12488.1| S-adenosyl-methyltransferase MraW [Escherichia coli H736]
 gi|331045949|gb|EGI18068.1| S-adenosyl-methyltransferase MraW [Escherichia coli M605]
 gi|331051433|gb|EGI23482.1| S-adenosyl-methyltransferase MraW [Escherichia coli M718]
 gi|331071446|gb|EGI42803.1| S-adenosyl-methyltransferase MraW [Escherichia coli TA280]
 gi|331072118|gb|EGI43454.1| S-adenosyl-methyltransferase MraW [Escherichia coli H591]
          Length = 346

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 118/312 (37%), Positives = 179/312 (57%), Gaps = 19/312 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++  +
Sbjct: 39  KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK 98

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +FS+    FS L +YV ++     +DG++ DLGVSS Q+D  +RGFSF + G
Sbjct: 99  TI---DDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDG 155

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   T++
Sbjct: 156 PLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKE 215

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L ++SF
Sbjct: 216 LAEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISF 274

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305
           HSLEDR+VK+F    S        +  +            +++ K  ++P +E+VA N R
Sbjct: 275 HSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGK--LMPGEEEVAENPR 332

Query: 306 SRSAKLRAGMRT 317
           +RS+ LR   RT
Sbjct: 333 ARSSVLRIAERT 344


>gi|149910619|ref|ZP_01899257.1| S-adenosyl-methyltransferase [Moritella sp. PE36]
 gi|149806347|gb|EDM66322.1| S-adenosyl-methyltransferase [Moritella sp. PE36]
          Length = 313

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 127/307 (41%), Positives = 185/307 (60%), Gaps = 11/307 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           HV VLL + +A L+  P  + +D TFG GG+SR           +IA+DRDP A++ G E
Sbjct: 7   HVSVLLNETVAGLDLKPDGIYIDGTFGRGGHSRFILSQLGENGRLIAIDRDPEAIAVG-E 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            ++    +F +    FS + DY+ +KG    +DGV+ DLGVSS Q+D   RGFSF + GP
Sbjct: 66  ALKLEDPRFDIVHGPFSGIADYMENKGLTGHIDGVLLDLGVSSPQLDDASRGFSFLRDGP 125

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM   SGISA+  +  A+  D+  +L + GEE+ A +IA A+V  R   PF+TT  L
Sbjct: 126 LDMRMDPTSGISAAKWLATADYDDIVWVLKVFGEERFARKIARAVVFDRDDKPFETTSQL 185

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           +SLI + V  SK    HPATRSFQA+RI++N+E+EE+ + L  A + LK+GG L V+SFH
Sbjct: 186 ASLICRVVPKSKKETKHPATRSFQAIRIYINSELEEIERALAGALQCLKSGGRLSVISFH 245

Query: 252 SLEDRLVKKFFAS--RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK+F     R  +V     ++              K++ P+++++  N R+RS+
Sbjct: 246 SLEDRIVKQFIRKQARGKEVPYGLPIMQEEIDKTRTMKAIGKMLKPSEDELELNPRARSS 305

Query: 310 KLRAGMR 316
            LR   +
Sbjct: 306 VLRVAEK 312


>gi|332704509|ref|ZP_08424597.1| Ribosomal RNA small subunit methyltransferase H [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332554658|gb|EGJ51702.1| Ribosomal RNA small subunit methyltransferase H [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 328

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 127/324 (39%), Positives = 182/324 (56%), Gaps = 13/324 (4%)

Query: 9   MSSAIHHTIGDH--VPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIA 63
           M    H   G+H  + VLL + +  L P PG   LD T G GG+S +  ++   G+ ++ 
Sbjct: 2   MRELAHKEQGEHGHISVLLAETLEFLAPRPGGRYLDGTLGLGGHSEAILELAGQGAELLG 61

Query: 64  LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDC 120
           LDRD  A+   +  +  + +   L QA +S  +  + + G   +DG V DLG+SS+Q+D 
Sbjct: 62  LDRDAQALERARTRLARFGQAAHLVQAPYSSFEAEMENLGWDLLDGAVLDLGISSLQVDL 121

Query: 121 GDRGFSFQKSGPLDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178
            +RGFSF   GPLDMRM        AS +VN+A+ + L  I+  LGEE  A RIA AIV+
Sbjct: 122 AERGFSFMAEGPLDMRMDPDSGAAPASQIVNKASCERLKEIIRDLGEEPMAGRIARAIVE 181

Query: 179 RRQSAPFQTTQDLSSLIQKTVYFSKNN--RIHPATRSFQALRIFVNNEIEELAQGLRSAE 236
            RQ    +TT +L++++ +          R HPATR+FQALR+ VN+E+EEL   L    
Sbjct: 182 ARQDKEIETTLELAAIVARAYPAKWRRTARNHPATRTFQALRMAVNSELEELESFLSRIT 241

Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVP 295
             L+ GG ++V+SFHSLEDRLVK  F   + K    R             + +TKK + P
Sbjct: 242 DRLRPGGRVVVISFHSLEDRLVKWAFREDARKCRCPRTQPFCDCGGQPRLKLLTKKPLAP 301

Query: 296 TQEDVAFNRRSRSAKLRAGMRTVE 319
           +++++A N RSRSAKLRA  R  E
Sbjct: 302 SEQEMAANPRSRSAKLRAAERVGE 325


>gi|320527513|ref|ZP_08028693.1| S-adenosyl-methyltransferase MraW [Solobacterium moorei F0204]
 gi|320132070|gb|EFW24620.1| S-adenosyl-methyltransferase MraW [Solobacterium moorei F0204]
          Length = 311

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 109/309 (35%), Positives = 161/309 (52%), Gaps = 9/309 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77
           H  VLL++ +  LN     + +D T G GG+S          ++ A D+D  A++   E 
Sbjct: 3   HTSVLLKETVDSLNVKEDGIYVDGTLGRGGHSGYLISKLKSGHLYAFDKDSQAIAESTEN 62

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++D     ++    F  +++ +  +G   V+G++ DLGVSS Q D   RGFS++    LD
Sbjct: 63  LKDVLPYITMIHNDFRSMKEELAKRGIYEVNGIMMDLGVSSPQFDDPTRGFSYRYDARLD 122

Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM+    + A  VVN  + ++L RIL   GEEK    IA AI K+R   P +TT  L  
Sbjct: 123 MRMNQEQELDAYQVVNTYSFEELCRILREYGEEKFTKSIARAIEKQRAIQPIETTFQLVD 182

Query: 194 LIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +I+  +       + HPA ++FQALRI VN+E+  L +GL  A   LK  G   +++FHS
Sbjct: 183 VIKSALPDKVLRQKGHPAKQTFQALRIEVNDELGALQKGLEEALSILKPNGRCAIITFHS 242

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           LEDR+VK  F   S        +    S+   A +  ITKK +  T E++  N RS SAK
Sbjct: 243 LEDRMVKNVFKEYSSAPYIDPRIPIKASDIKQADYNLITKKPITATDEELDENHRSHSAK 302

Query: 311 LRAGMRTVE 319
           LR   +  E
Sbjct: 303 LRVIEKKGE 311


>gi|260886497|ref|ZP_05897760.1| S-adenosyl-methyltransferase MraW [Selenomonas sputigena ATCC
           35185]
 gi|330839659|ref|YP_004414239.1| S-adenosyl-methyltransferase MraW [Selenomonas sputigena ATCC
           35185]
 gi|260863640|gb|EEX78140.1| S-adenosyl-methyltransferase MraW [Selenomonas sputigena ATCC
           35185]
 gi|329747423|gb|AEC00780.1| S-adenosyl-methyltransferase MraW [Selenomonas sputigena ATCC
           35185]
          Length = 311

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 107/307 (34%), Positives = 160/307 (52%), Gaps = 11/307 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQE 76
           H  V+ E+ +A L   P    +D T G  G++R           +I LD+D  A+   +E
Sbjct: 5   HTSVMPEETLAALAVKPAGTYIDCTLGGAGHARRIADRLSPAGRLIGLDQDEAAIRAAKE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + +   +  + ++ F  L   +   GV   DGV+FDLGVSS QID  +RGFS+ +  PL
Sbjct: 65  RLANVSCRVDVVRSNFRALDSVLQSLGVTSVDGVLFDLGVSSHQIDTAERGFSYMQDAPL 124

Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  S + SA +VVN+ +  +L  I    GEE+ A RIA  IV  RQ  P +TT +L 
Sbjct: 125 DMRMDTSRLLSAHEVVNEYDEAELWHIFRDYGEERWAKRIAEFIVAARQEKPIETTGELV 184

Query: 193 SLIQKTVYF--SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
            ++ + V     +    HPA R FQA+RI VN+E+  L   + +A  AL  GG + V++F
Sbjct: 185 DIVCRAVPKGVRRAAGGHPAKRIFQAIRIEVNDELGILQASVENAVHALAPGGRIAVLTF 244

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK+     +   +      +    H    + +  K   P+  + A N R++SA
Sbjct: 245 HSLEDRIVKQALKELARGCICPPGLPVCVCGHEPKVRLL-GKAQKPSAAEAAENPRAKSA 303

Query: 310 KLRAGMR 316
           KLR   +
Sbjct: 304 KLRVAEK 310


>gi|76788170|ref|YP_329009.1| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae A909]
 gi|161485617|ref|NP_687320.2| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae
           2603V/R]
 gi|30173046|sp|Q8E1R8|RSMH_STRA5 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|88909222|sp|Q3K394|RSMH_STRA1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|76563227|gb|ABA45811.1| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae A909]
          Length = 315

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 101/320 (31%), Positives = 166/320 (51%), Gaps = 15/320 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           M++  H     H+ VLL + + +L+  P  + +DAT G  G+S           ++ A D
Sbjct: 1   MTNDFH-----HITVLLHETVDMLDIKPDGIYVDATLGGAGHSEYLLSQLGPDGHLYAFD 55

Query: 66  RDPFAVSCGQETMRDYKE--QFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120
           +D  A+      ++ Y +  Q +  +  F  L   +   GV   +G+ +DLGVSS Q+D 
Sbjct: 56  QDQKAIDNAHIRLKKYVDTGQVTFIKDNFRNLSSNLKALGVSEINGICYDLGVSSPQLDE 115

Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS+++  PLDMRM+    ++A DVVN  +  DL RI    GE+K + +IA  I + 
Sbjct: 116 RERGFSYKQDAPLDMRMNREQSLTAYDVVNTYSYHDLVRIFFKYGEDKFSKQIARKIEQV 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R      TT +L+ +I+ +    +   + HPA + FQA+RI VN+E+    + ++ A   
Sbjct: 176 RAEKTISTTTELAEIIKSSKSAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDL 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L   G + V++FHSLEDRL K+ F   S   +        +      + + +K ++P+QE
Sbjct: 236 LAVDGRISVITFHSLEDRLTKQLFKEASTVEVPKGLPFIPDDLQPKMELVNRKPILPSQE 295

Query: 299 DVAFNRRSRSAKLRAGMRTV 318
           ++  N R+ SAKLR   R  
Sbjct: 296 ELEANNRAHSAKLRVARRIR 315


>gi|320161732|ref|YP_004174957.1| S-adenosyl-methyltransferase MraW [Anaerolinea thermophila UNI-1]
 gi|319995586|dbj|BAJ64357.1| S-adenosyl-methyltransferase MraW [Anaerolinea thermophila UNI-1]
          Length = 312

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 127/314 (40%), Positives = 179/314 (57%), Gaps = 12/314 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69
           +      H PVL +++I  L P      +DAT GAGG++    +       ++ LD DP 
Sbjct: 1   MSEASVPHRPVLYQEIILALRPHSPGRYVDATVGAGGHAAGILEASSPKGELLGLDPDPQ 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFS 126
           A++   + +  + E+  L QA++  L++ +   G   VDG+VFDLGVSSMQ+D  +RGFS
Sbjct: 61  ALALASQRLSIFGERVHLVQASYVTLKEQLAVLGWQEVDGIVFDLGVSSMQLDTPERGFS 120

Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           F   G LDMR       +A D+VN    ++L RIL   GEE+ A RIA AIV+ R   P 
Sbjct: 121 FSAEGKLDMRFDPCQDTTAEDLVNHLPEEELARILWEYGEERYARRIARAIVQAR---PL 177

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            TT++L+ L+ + V   K  RIHPATR+FQALRI VN E+E +   L  A + LKAGG L
Sbjct: 178 HTTRELAELVARIV-GGKRERIHPATRTFQALRIAVNRELEAIETVLPQAVECLKAGGRL 236

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
            V+SFHSLEDRLVK FF   S   +      + +  H A  + +T+  +  + E+V  N 
Sbjct: 237 AVISFHSLEDRLVKHFFRRESRDCLCPPEQPVCTCGHKASLREVTRHPIEASDEEVRENP 296

Query: 305 RSRSAKLRAGMRTV 318
           R+RSA+LR   +  
Sbjct: 297 RARSARLRVAEKIA 310


>gi|300813315|ref|ZP_07093670.1| S-adenosyl-methyltransferase MraW [Peptoniphilus sp. oral taxon 836
           str. F0141]
 gi|300512586|gb|EFK39731.1| S-adenosyl-methyltransferase MraW [Peptoniphilus sp. oral taxon 836
           str. F0141]
          Length = 320

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 115/307 (37%), Positives = 171/307 (55%), Gaps = 10/307 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
            HV VL  +V+  LN    K+ +DAT G  G+S+   K+ +N   +I +D+D  A+    
Sbjct: 4   KHVSVLYNEVLENLNIRENKIYMDATIGGAGHSKGIAKILNNSGLLIGIDQDKDAIKKSH 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E + +Y E   LF   +   ++ +     K VDG++ DLGVSS Q D G RGFS++    
Sbjct: 64  EVLSEY-ENVKLFNTNYKNFEEILDSLHIKKVDGILLDLGVSSYQFDKGKRGFSYRFDSE 122

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  +  ++A  +VN+ +  +L RI+   GEE  A RIA  IV+ R+     TT DL
Sbjct: 123 LDMRMDKTLPLTAKTIVNEYSKDELYRIIKEYGEENWAKRIAEFIVQERKIKKINTTFDL 182

Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+K V   ++ +  HPA R+FQALRI VN+E+  L + +    + L  GG L ++SF
Sbjct: 183 VEVIKKAVPKGARRDGPHPAKRTFQALRIEVNDELNVLKKSIYKFVERLNPGGRLAIISF 242

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  F       +     +I +       + IT+K +VPT+E++  N RS SA
Sbjct: 243 HSLEDRIVKNAFRYLYSDCVCPPEQIICTCDKKREIEIITRKPIVPTKEEIKNNNRSHSA 302

Query: 310 KLRAGMR 316
           KLR   +
Sbjct: 303 KLRVAEK 309


>gi|332288560|ref|YP_004419412.1| S-adenosyl-methyltransferase MraW [Gallibacterium anatis UMN179]
 gi|330431456|gb|AEC16515.1| S-adenosyl-methyltransferase MraW [Gallibacterium anatis UMN179]
          Length = 321

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 120/320 (37%), Positives = 178/320 (55%), Gaps = 20/320 (6%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69
           + ++   H  VLL + +  L   P  + +D TFG GG+SR    +      +IA+DRDP 
Sbjct: 4   VTYSDPSHFTVLLNEAVDGLAIKPNGIYIDGTFGRGGHSRRILSLLGEHGRLIAIDRDPQ 63

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGF 125
           A++  Q        +FS+    FS++ +          +DG++ DLGVSS Q+D  +RGF
Sbjct: 64  AIAAAQSI---QDPRFSIEHHNFSEINEICEKYQLIGKIDGILLDLGVSSPQLDQAERGF 120

Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-- 182
           SF + GPLDMRM  + G+SA+  + Q +  DL  +L   GEE+ A RIA  IV+  Q   
Sbjct: 121 SFMQDGPLDMRMDTTKGLSAAQWLQQVSESDLAWVLKTFGEERFAKRIARNIVQFNQQAK 180

Query: 183 ----APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
                P   T  L+ LI +++   + ++ HPATRSFQA+RIF+N+E+EEL + L +A   
Sbjct: 181 LNGTEPLTRTLQLAQLIAQSIPLKEKHK-HPATRSFQAIRIFINSELEELEKILTAAIDV 239

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ--SITKKVVVPT 296
           L   G L ++SFHSLEDRLVK+F   +S      R +  +       Q   I  K ++P+
Sbjct: 240 LAPQGRLSIISFHSLEDRLVKRFMKKQSKGDDIPRGLPLTEDQIERNQKLKIIGKAIMPS 299

Query: 297 QEDVAFNRRSRSAKLRAGMR 316
           ++++A N RSRSA LR   R
Sbjct: 300 EQEIAVNSRSRSAVLRVAER 319


>gi|73662901|ref|YP_301682.1| S-adenosyl-methyltransferase MraW [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
 gi|88909221|sp|Q49WW1|RSMH_STAS1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|72495416|dbj|BAE18737.1| putative methyltransferase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 311

 Score =  371 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 103/308 (33%), Positives = 164/308 (53%), Gaps = 9/308 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSC 73
           +  HV V+L++ I  LN     V +D T G  G++            +IA+D+D  A+  
Sbjct: 1   MFHHVSVMLKETIDYLNIKEDGVYVDCTLGGAGHALYLLNQLGDEGRLIAIDQDTTAIEN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E ++++  + +     F ++ + + D   + VDG+ +DLGVSS Q+D  +RGFS+   
Sbjct: 61  AKEVLKEHLHKVTFVHNNFRKITEILNDLNIEKVDGIYYDLGVSSPQLDVPERGFSYHHD 120

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM  +  +SA +VVN+   + L RI    GEEK + +IA  I + R+  P +TT 
Sbjct: 121 AKLDMRMDQTQSLSAFEVVNEWEFEKLVRIFHRYGEEKFSKQIARRIEQNREQKPIETTL 180

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I++ +    +    HPA R FQA+RI VN+E+      L  A  A+K  G + V+
Sbjct: 181 ELVDVIKEGIPAKARRKGGHPAKRIFQAIRIAVNDELSAFEDSLEQAIDAVKMDGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F          R   +   A+    + + +K ++ T ED+  N R+R
Sbjct: 241 TFHSLEDRLCKQMFQEYEKGPDVPRGLPVIPEAYTPKLKRVNRKPIIATDEDLEENNRAR 300

Query: 308 SAKLRAGM 315
           SAKLR   
Sbjct: 301 SAKLRVAE 308


>gi|257467026|ref|ZP_05631337.1| methyltransferase [Fusobacterium gonidiaformans ATCC 25563]
          Length = 313

 Score =  371 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 107/307 (34%), Positives = 175/307 (57%), Gaps = 10/307 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H+PVL E+ +  L   P  + +D T G G +S    K       +I++D+D  A++  ++
Sbjct: 9   HIPVLYEETLDQLVWNPDGIYIDCTLGGGSHSEGILKRLSEKGRLISIDQDANAIAFCKK 68

Query: 77  TMRDYKEQFSLFQATFSQLQ--DYVPD-KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  + +Q+S+FQ  F  +    Y+     VDG++ D+GVSS Q+D G+RGFS++    L
Sbjct: 69  RLEKHGKQWSVFQNNFENIDIVSYLAGVDKVDGILMDIGVSSTQLDDGERGFSYRYDAKL 128

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+    +SA +VVN    +DL RIL   GEE+ A +IA  I + R+  P +TT +L 
Sbjct: 129 DMRMNKEQDLSAYEVVNTYAEQDLVRILFEYGEERHAKKIASFICENRKEKPIETTGELV 188

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           ++I++   +S+    HPA ++FQA+RI VN E+E L + ++ +   LK  G L +++FHS
Sbjct: 189 AIIKRA--YSERASKHPAKKTFQAIRIEVNRELEVLEKAIQKSVDLLKPKGHLAIITFHS 246

Query: 253 LEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDRLVK  F   +          +      A  + +TKK ++P+++++  N R+ S+KL
Sbjct: 247 LEDRLVKTVFKDLATACKCPPELPVCVCGGKAKVKILTKKPIIPSEDELGKNNRAHSSKL 306

Query: 312 RAGMRTV 318
           R   R  
Sbjct: 307 RVVERLA 313


>gi|326204085|ref|ZP_08193946.1| S-adenosyl-methyltransferase MraW [Clostridium papyrosolvens DSM
           2782]
 gi|325985852|gb|EGD46687.1| S-adenosyl-methyltransferase MraW [Clostridium papyrosolvens DSM
           2782]
          Length = 313

 Score =  371 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 111/310 (35%), Positives = 165/310 (53%), Gaps = 11/310 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
            H  VLL++ I  LN     + +D T G  G+S    K       +I LD+D FAV    
Sbjct: 4   KHKSVLLDECIENLNINQDGIYVDGTIGGAGHSSEIYKRLGEKGCLIGLDQDSFAVETSV 63

Query: 76  ETMRDYKEQ--FSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           + + + + Q  F +    F  ++    + G   VDG++ DLGVSS Q+D   RGFS+Q  
Sbjct: 64  KRLSEIESQADFKVVNTNFKNIRKACSELGIDEVDGILLDLGVSSHQLDEASRGFSYQHD 123

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM   S +SA DVVN+ + +D+ RI+   GEEK +SRIA  IV+ R + P +TT 
Sbjct: 124 APLDMRMDTKSDLSAYDVVNKYSEQDIYRIIRDYGEEKWSSRIAKFIVEARSNKPVETTY 183

Query: 190 DLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I++ V   ++ +  HPA R+FQA+RI VNNE+  L + +      LK  G L ++
Sbjct: 184 ELVDIIKRAVPSSARRDGPHPAKRTFQAIRIEVNNELGILNKTIEDCVDLLKGEGRLCII 243

Query: 249 SFHSLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+VK  F              +         + + +K +V    ++  N R+R
Sbjct: 244 TFHSLEDRIVKLQFNKMVNPCTCPTSFPVCVCGKKPRAKLVNRKPIVSGVSELEENPRAR 303

Query: 308 SAKLRAGMRT 317
           SAKLR   + 
Sbjct: 304 SAKLRVLQKI 313


>gi|94987539|ref|YP_595472.1| S-adenosyl-methyltransferase MraW [Lawsonia intracellularis
           PHE/MN1-00]
 gi|172046236|sp|Q1MPC6|RSMH_LAWIP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|94731788|emb|CAJ55151.1| predicted S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 312

 Score =  371 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 114/311 (36%), Positives = 182/311 (58%), Gaps = 11/311 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
            H PV+LE+ IA+L P      LD T G GG+S +  +    G+ +  LD+D  A++  +
Sbjct: 1   MHQPVMLEETIAMLKPHAKGRYLDGTVGLGGHSFAILQSAGDGAELCGLDQDKKALAIAE 60

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            T++ +K++  L    +S     +   G   +DG + D+GVSS+Q+D  +RGFSF   GP
Sbjct: 61  MTLKPFKKRVHLVHTKYSSFPLILKALGWKLLDGALIDIGVSSLQLDNAERGFSFLYDGP 120

Query: 133 LDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           LDMRM    +  S  ++VN++  + L  I+   GEE QA+RIA AIV++R++ P  TT++
Sbjct: 121 LDMRMDQDANNNSLFEIVNKSRQEYLKDIISRYGEEPQANRIAKAIVQKRRTKPITTTKE 180

Query: 191 LSSLIQKTVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L+ LI++    +   +   HPAT++FQA RI VN+E+ EL + L      +  GG + V+
Sbjct: 181 LADLIEQAYPAAWRAKSRHHPATKTFQAFRIVVNSELNELEKFLNMIMGWIAPGGRVAVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           SFHSLEDR+VK++  S +   +   +  +    H      ITKK + P++++++ N RSR
Sbjct: 241 SFHSLEDRIVKQYMKSWTRSCICPPYVPVCKCFHKPEAILITKKPIRPSEKEISENIRSR 300

Query: 308 SAKLRAGMRTV 318
           SAKLR   + +
Sbjct: 301 SAKLRVAEKVL 311


>gi|295425110|ref|ZP_06817815.1| S-adenosyl-methyltransferase MraW [Lactobacillus amylolyticus DSM
           11664]
 gi|295065169|gb|EFG56072.1| S-adenosyl-methyltransferase MraW [Lactobacillus amylolyticus DSM
           11664]
          Length = 315

 Score =  371 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 105/312 (33%), Positives = 166/312 (53%), Gaps = 13/312 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76
            H  VLL + I  L P  G + +DATFG GG+++          +I  D+D +A+   + 
Sbjct: 4   KHTSVLLHETIDNLKPKDGGLYVDATFGGGGHAKYLLSKLNTGTLIGFDQDEYAIKAAKL 63

Query: 77  TM-----RDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSF 127
                   D   +  L    FS L+  +       G+DG+ +DLGVSS Q D  +RGFS+
Sbjct: 64  NFTDLLQEDSNPRLQLVHDNFSHLEQDLVKLGYPDGIDGIYYDLGVSSPQFDQAERGFSY 123

Query: 128 QKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           + +  LDMRM  S  + A  +VNQ++ +DL  IL   G+EK + +IAH IV++R+  P +
Sbjct: 124 RYNARLDMRMDQSKELDAYQLVNQSSQRDLANILYKYGDEKFSRQIAHRIVEKRREKPIE 183

Query: 187 TTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           TT +L  +I++ +   ++    HPA +SFQALR+ VN+E+E L   L  A K L+  G +
Sbjct: 184 TTFELVDIIKEAIPAYARRTGGHPAKKSFQALRVAVNHELEVLQTSLEEAVKLLRPKGRI 243

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
            V++F S ED++VKK F   S   +     +  +      + + +K +  +  ++  N R
Sbjct: 244 SVITFQSDEDKIVKKIFKKYSEVEVPRGMPMIPDGMKPTLRLVNRKPITASALELENNNR 303

Query: 306 SRSAKLRAGMRT 317
           S SAKLR   + 
Sbjct: 304 SHSAKLRVAEKI 315


>gi|227524041|ref|ZP_03954090.1| S-adenosyl-methyltransferase [Lactobacillus hilgardii ATCC 8290]
 gi|227088780|gb|EEI24092.1| S-adenosyl-methyltransferase [Lactobacillus hilgardii ATCC 8290]
          Length = 315

 Score =  371 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 110/310 (35%), Positives = 173/310 (55%), Gaps = 12/310 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76
            HV VLL + +  L+  P    +DAT G GG++    K     ++ + D+D  A+S  Q+
Sbjct: 5   KHVTVLLHEAVDGLDVDPNGTYVDATLGGGGHTTEILKRIDKGHLYSFDQDEEAISYNQQ 64

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +R Y   ++ +L    F  ++  + D+G+   DG+V+DLGVSS Q D   RGFS++   
Sbjct: 65  HLRQYVENDKLTLIHDNFRNIKVALADQGISKIDGIVYDLGVSSPQFDEAGRGFSYRFEA 124

Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM       A  V+N+   + L RI    GEEK + +IA  I + R+  P  TT D
Sbjct: 125 HLDMRMDQDNPVDAWKVINEWPYEKLVRIFYRYGEEKFSKQIARRIERTREDHPINTTTD 184

Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L +LI++ +  + + +  HPA + FQA+RI VN+E+  L   L  + + L  GG + V++
Sbjct: 185 LVTLIKEAIPAAARRHGGHPAKKVFQAVRIAVNDELSALEDSLEQSLELLAVGGRISVIT 244

Query: 250 FHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           F SLEDRLVK  F  ++   ++     +IP    P  ++ IT+K ++P ++++A N R+ 
Sbjct: 245 FQSLEDRLVKTMFKEKASLPELPPNLPVIPKELQPK-YKLITRKPIIPNEDELADNHRAH 303

Query: 308 SAKLRAGMRT 317
           SAKLR   RT
Sbjct: 304 SAKLRIIERT 313


>gi|78484904|ref|YP_390829.1| methyltransferase [Thiomicrospira crunogena XCL-2]
 gi|123555855|sp|Q31I68|RSMH_THICR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|78363190|gb|ABB41155.1| S-adenosyl-methyltransferase MraW [Thiomicrospira crunogena XCL-2]
          Length = 314

 Score =  371 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 122/318 (38%), Positives = 178/318 (55%), Gaps = 13/318 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           MS        +H PV+L + +A LN  P  + +D TFG GG+SR+          ++A+D
Sbjct: 1   MSEIEQTGQSNHYPVMLSESVAGLNIDPNGIYIDCTFGRGGHSRAILNELGEQGRLLAID 60

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCG 121
           +DP A+        D   +F +   +F  LQ Y   +     +DG++ DLGVSS Q+D  
Sbjct: 61  QDPEAIRYADANFDD--PRFEIQHGSFEALQQYCEARDWVGKIDGILIDLGVSSPQLDEA 118

Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF +SGPLDMRM+  +G+SA + + Q + K L ++L   GEE+ + RIA  I +  
Sbjct: 119 ERGFSFMRSGPLDMRMNPQTGLSAKEWLTQVDEKTLAQVLKQYGEERFSGRIARHIKEAV 178

Query: 181 QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           Q    QTT DL+ ++ K    ++ ++ HPATR+FQA+RI VN E++ L   L  +   LK
Sbjct: 179 QEQKLQTTLDLAQVVTKASPKTEKHK-HPATRTFQAIRIAVNRELDVLKTVLEVSVAVLK 237

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
            GG L V+SFHSLEDR+VK+F   +S  K +     I       V + +  K V P++E+
Sbjct: 238 TGGRLSVISFHSLEDRIVKQFIRDQSRIKDLFPDSPIQLEVVEPVIKKV-GKPVFPSKEE 296

Query: 300 VAFNRRSRSAKLRAGMRT 317
              N RSRSA LR   R 
Sbjct: 297 CQENPRSRSAVLRIAERI 314


>gi|58337113|ref|YP_193698.1| S-adenosyl-methyltransferase MraW [Lactobacillus acidophilus NCFM]
 gi|227903687|ref|ZP_04021492.1| S-adenosyl-methyltransferase [Lactobacillus acidophilus ATCC 4796]
 gi|68565411|sp|Q5FKV7|RSMH_LACAC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|58254430|gb|AAV42667.1| cell division protein [Lactobacillus acidophilus NCFM]
 gi|227868574|gb|EEJ75995.1| S-adenosyl-methyltransferase [Lactobacillus acidophilus ATCC 4796]
          Length = 315

 Score =  371 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 104/311 (33%), Positives = 164/311 (52%), Gaps = 13/311 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76
            H  VLL + I  L P    + +DATFG GG+++          +I  D+D +A+   + 
Sbjct: 4   KHTSVLLHETIDNLKPKNDGLYVDATFGGGGHAKYLLSKIDTGTLIGFDQDEYAIKSAEL 63

Query: 77  TMR-----DYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSF 127
                   D + +  L    FS L++ +       G+DG+ +DLGVSS Q D  DRGFS+
Sbjct: 64  NFANLLKPDSEPKLQLVHDNFSNLEENLVKLGYTDGIDGIYYDLGVSSPQFDQADRGFSY 123

Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           + +  LDMRM+    + A  +VN  + K+L  IL   G+EK + +IAH IV++R+  P  
Sbjct: 124 RYNARLDMRMNQDQDLDAYQLVNTLSQKELADILYQYGDEKFSRQIAHKIVEKRKEKPIV 183

Query: 187 TTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           TT +L  +I+  +   ++    HPA +SFQALR+ VN+E++ L   L  A K L+ GG +
Sbjct: 184 TTFELVDIIKDAIPAYARRTGGHPAKKSFQALRVAVNHELDVLQASLEEAIKVLRPGGRI 243

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
            V++F S ED++VKK F   S   +        +      + + +K +V +  ++  N R
Sbjct: 244 SVITFQSHEDKIVKKIFKKYSEVEVPRGMPFIPDDMKPTLKLVNRKPIVASDSELENNNR 303

Query: 306 SRSAKLRAGMR 316
           S SAKLR   +
Sbjct: 304 SHSAKLRVAEK 314


>gi|330828037|ref|YP_004390989.1| ribosomal RNA small subunit methyltransferase H [Aeromonas veronii
           B565]
 gi|328803173|gb|AEB48372.1| Ribosomal RNA small subunit methyltransferase H [Aeromonas veronii
           B565]
          Length = 312

 Score =  371 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 121/313 (38%), Positives = 175/313 (55%), Gaps = 14/313 (4%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSC 73
             +H+ VLL + +  L   P  V +D TFG GG+SR   +       +IA+DRDP A++ 
Sbjct: 4   AAEHITVLLHEAVEGLAIKPDGVYVDGTFGRGGHSRLILQHLGPNGRLIAIDRDPQAIA- 62

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQK 129
             E  +    +F +    FS +  Y+ ++G    VDG + DLGVSS Q+D  +RGFSF K
Sbjct: 63  --EAAKIQDPRFEIVHGPFSGIASYLDERGLLGKVDGFLLDLGVSSPQLDDAERGFSFMK 120

Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM   SG SA++ + +A+V D+  +L   GEE+ A +IA AIV  R + P+  T
Sbjct: 121 DGPLDMRMDPTSGQSAAEWLAKADVDDIAWVLKTFGEERFAKKIARAIVHDRVTEPYVRT 180

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           + L+ +I +    SK    H ATRSFQA+RI++N+E++E+   L  A + L   G L V+
Sbjct: 181 RQLAEMIARVNP-SKEKGKHAATRSFQAIRIYINSELDEIETALNGALEVLAPHGRLSVI 239

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI--TKKVVVPTQEDVAFNRRS 306
           SFHSLEDRLVK F             +  + A  A  + +    K + P+  +V+ N RS
Sbjct: 240 SFHSLEDRLVKHFIRKHEKGPEVPYGIPLTEAQLAGGRKLKSVGKALKPSDHEVSENSRS 299

Query: 307 RSAKLRAGMRTVE 319
           RS+ LR   R  E
Sbjct: 300 RSSVLRVAERLAE 312


>gi|317489854|ref|ZP_07948347.1| MraW methylase [Eggerthella sp. 1_3_56FAA]
 gi|316911009|gb|EFV32625.1| MraW methylase [Eggerthella sp. 1_3_56FAA]
          Length = 318

 Score =  371 bits (953), Expect = e-101,   Method: Composition-based stats.
 Identities = 117/311 (37%), Positives = 179/311 (57%), Gaps = 14/311 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H PVLL + +   N  P    +DAT G  G+S    K+   G  +I +D+D  A++  + 
Sbjct: 7   HTPVLLAECLEYSNLKPQHTFVDATLGGAGHSFEAAKLIGSGGTLIGIDQDEVALAAARL 66

Query: 77  TM----RDYKEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
            +     D + +  L +  F  + + +      GVD V+FDLGVSS+QID   RGFSF++
Sbjct: 67  KLGTLPDDVRPRLELVRGNFGNMDEALLSTEVPGVDAVLFDLGVSSVQIDTPSRGFSFKE 126

Query: 130 SGPLDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           +GPLDMRM      ++A++++N     DLTRI+    +EK ASRIA   V+ RQ+AP +T
Sbjct: 127 NGPLDMRMDPGKQTLTAAEIINTYTAADLTRIIRTYSDEKWASRIADFAVRARQNAPIET 186

Query: 188 TQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           ++ L  +I+  +   ++    HPA R+FQALRI VN E++ L  GL +A + L  GG L+
Sbjct: 187 SEQLVDIIKAAIPASARRAGGHPAKRTFQALRIEVNGELDVLRSGLDAAIRWLNPGGRLV 246

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           V+S+HSLEDR+VK+ FA  + +      +         +   +T+K V+PT E++  N R
Sbjct: 247 VISYHSLEDRIVKETFAKFANRCTCPPDLPACMCGKQPILDIVTRKPVLPTAEEIERNAR 306

Query: 306 SRSAKLRAGMR 316
           +RSAKLR   +
Sbjct: 307 ARSAKLRVAQK 317


>gi|240948415|ref|ZP_04752793.1| S-adenosyl-methyltransferase MraW [Actinobacillus minor NM305]
 gi|240297241|gb|EER47799.1| S-adenosyl-methyltransferase MraW [Actinobacillus minor NM305]
          Length = 314

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 120/320 (37%), Positives = 177/320 (55%), Gaps = 20/320 (6%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           MS  +H     H+ VLL + +  L   P  + +D TFG GG+SR           +IA D
Sbjct: 1   MSDTLH----KHITVLLHEAVEGLAIKPNGIYIDGTFGRGGHSRLILSKLNEQGRLIATD 56

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCG 121
           RDP A++           +F +    FS +     D      +DG++ DLGVSS Q+D  
Sbjct: 57  RDPRAIAEAHTI---TDPRFQIIHTAFSAIPQVCEDLDLTGKIDGILLDLGVSSPQLDDA 113

Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF + GPLDMRM  S G+SA++ ++Q +++DLT +L   GEE+ A RIA AIV   
Sbjct: 114 ERGFSFMRDGPLDMRMDTSKGLSAAEWLDQVSIEDLTWVLKEFGEERFAKRIATAIVNFN 173

Query: 181 QS--APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           ++       T  L+ +I   V F K+   HPATRSFQA+RIF+N+E++EL + L SA   
Sbjct: 174 KTSSQKITRTLQLAQIISDAVPF-KDKHKHPATRSFQAIRIFINSELDELEKALNSALSV 232

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPT 296
           L   G L ++SFHSLEDR+VK+F    S      R   ++ ++ +  +      K ++P+
Sbjct: 233 LAPEGRLSIISFHSLEDRMVKQFMKKNSKGKEVPRGLPILEADLNKDIPLKTIGKAIMPS 292

Query: 297 QEDVAFNRRSRSAKLRAGMR 316
           + ++  N RSRSA LR   +
Sbjct: 293 EAEIEANPRSRSAVLRVAEK 312


>gi|257438103|ref|ZP_05613858.1| S-adenosyl-methyltransferase MraW [Faecalibacterium prausnitzii
           A2-165]
 gi|257199434|gb|EEU97718.1| S-adenosyl-methyltransferase MraW [Faecalibacterium prausnitzii
           A2-165]
          Length = 322

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 113/318 (35%), Positives = 169/318 (53%), Gaps = 12/318 (3%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-----KMGSNVIAL 64
           +        +HVPVLL + +  L   P    LD T G  G+SR        + G  +I+L
Sbjct: 7   AQPFDPASFEHVPVLLNECLDGLKIDPAGTYLDGTAGGAGHSRQIALRLNGEQGGRLISL 66

Query: 65  DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCG 121
           D+DP AV   +  +       ++ Q  F      +   G+   +G + DLGVSS Q+D  
Sbjct: 67  DQDPDAVQTARARLAGLPA--TVVQINFRYAGQALEQLGIETINGALLDLGVSSHQLDDA 124

Query: 122 DRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
            RGFS++   PLDMRMS  G +A+D+VN  + ++L RIL   GEE  A +IA  IV+ R+
Sbjct: 125 ARGFSYRADAPLDMRMSQEGETAADLVNSESREELARILRDYGEEPFAWQIAGRIVEARE 184

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           +AP +TT  L+ ++   +  ++  +  +P+ R+FQALRI VN+E++ L +GL +    L 
Sbjct: 185 TAPIETTLQLADIVASAMPPAERRKNKNPSRRTFQALRIAVNHELDALEEGLDTIFAHLA 244

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQED 299
            GG L V++FHSLEDRLVK  F   S          +      A  + IT+K +    ++
Sbjct: 245 PGGRLCVITFHSLEDRLVKNKFRRWSTACTCPPEFPVCVCGGKAKAKLITRKPIEANTQE 304

Query: 300 VAFNRRSRSAKLRAGMRT 317
           +  NRRSRSA LR   + 
Sbjct: 305 LEENRRSRSAHLRVLEKI 322


>gi|94994874|ref|YP_602972.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes
           MGAS10750]
 gi|94548382|gb|ABF38428.1| S-adenosyl-methyltransferase mraW [Streptococcus pyogenes
           MGAS10750]
          Length = 337

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 104/328 (31%), Positives = 173/328 (52%), Gaps = 15/328 (4%)

Query: 1   MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-- 58
           ++  + K M+   H     HV VLL + + +L+  P  + +DAT G  G+S         
Sbjct: 14  LKYGTIKVMTKEFH-----HVTVLLHETVDMLDIKPNGIYVDATLGGSGHSAYLLSKLSE 68

Query: 59  -SNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGVD---GVVFDLG 112
             ++   D+D  A+   Q T++ Y  K Q +  +  F  L+  +   GVD   G+++DLG
Sbjct: 69  QGHLYCFDQDQKAIDNAQVTLKSYIDKGQVTFIKDNFRHLKARLTALGVDEIDGILYDLG 128

Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASR 171
           VSS Q+D  +RGFS+++  PLDMRM    + +A +VVN     DL +I    GE+K + +
Sbjct: 129 VSSPQLDERERGFSYKQDAPLDMRMDRQSLLTAYEVVNTYPFNDLVKIFFKYGEDKFSKQ 188

Query: 172 IAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQ 230
           IA  I + R   P +TT +L+ LI+      +   + HPA + FQA+RI VN+E+    +
Sbjct: 189 IARKIEQARAIKPIETTTELAELIKAAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADE 248

Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK 290
            ++ A + L   G + V++FHSLEDRL K+ F   S   +     +        F+ +++
Sbjct: 249 SIQDAMELLALDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPLIPEDMKPTFELVSR 308

Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMRTV 318
           K ++P+  ++  N+R+ SAKLR   +  
Sbjct: 309 KPILPSHSELTANKRAHSAKLRVAKKIR 336


>gi|259416349|ref|ZP_05740269.1| S-adenosyl-methyltransferase MraW [Silicibacter sp. TrichCH4B]
 gi|259347788|gb|EEW59565.1| S-adenosyl-methyltransferase MraW [Silicibacter sp. TrichCH4B]
          Length = 329

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 149/317 (47%), Positives = 196/317 (61%), Gaps = 5/317 (1%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRD 67
           M+       G HVPVLL+ ++  + P  G+  LD TFGAGGY++     G+  VI +DRD
Sbjct: 1   MTDRTAAPSGPHVPVLLKPLLEAVAPVTGR-WLDGTFGAGGYTKGLLAAGAEQVIGVDRD 59

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
           P A    Q+   +Y  +  L Q  FS++ +Y  D  +DGVV DLGVSSMQ+D  +RGFSF
Sbjct: 60  PLAFEMAQDWAEEYGARLVLQQGVFSRMDEYASD--LDGVVLDLGVSSMQLDLAERGFSF 117

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
            K GPLDMRMS  G SA+D+V +     L  IL   GEE+ + RIA AIV+ R   P  T
Sbjct: 118 MKDGPLDMRMSQDGSSAADLVAELTEVQLADILYSFGEERASRRIAKAIVRERALEPITT 177

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T  L+ +I+  +   K  + HPATRSFQALRI VN E EEL  GL +AE+ALK GGLL V
Sbjct: 178 TLRLAEIIESCLPRPKPGQSHPATRSFQALRIAVNGEYEELMGGLLAAERALKPGGLLAV 237

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPS-NAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+FHS+EDR+VK+FF  R+ K        P+    P+ F+ +T+K V P ++++A N RS
Sbjct: 238 VTFHSVEDRMVKRFFQHRANKTGNANRFAPAMEEQPSQFELVTRKAVGPDKDELAQNPRS 297

Query: 307 RSAKLRAGMRTVERSIE 323
           RSA LR G RT    +E
Sbjct: 298 RSALLRVGRRTDAAPVE 314


>gi|152968667|ref|YP_001333776.1| S-adenosyl-methyltransferase MraW [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238893062|ref|YP_002917796.1| S-adenosyl-methyltransferase MraW [Klebsiella pneumoniae
           NTUH-K2044]
 gi|262044874|ref|ZP_06017917.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
 gi|330012015|ref|ZP_08307232.1| S-adenosyl-methyltransferase MraW [Klebsiella sp. MS 92-3]
 gi|263456196|sp|A6T4M5|RSMH_KLEP7 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|150953516|gb|ABR75546.1| S-adenosyl-methyltransferase [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238545378|dbj|BAH61729.1| S-adenosyl-methyltransferase [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|259037843|gb|EEW39071.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
 gi|328534004|gb|EGF60656.1| S-adenosyl-methyltransferase MraW [Klebsiella sp. MS 92-3]
          Length = 313

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 120/312 (38%), Positives = 182/312 (58%), Gaps = 19/312 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++  Q
Sbjct: 6   KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSRLGAEGRLLAIDRDPQAIAVAQ 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +FS+    FSQL +YV ++     +DG++ DLGVSS Q+D  +RGFSF + G
Sbjct: 66  TI---DDPRFSIVHGPFSQLAEYVGERNLTGKIDGILLDLGVSSPQLDDAERGFSFMRDG 122

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + G SA++ +  A   D+  ++   GEE+   RIA AIV+R +  P   T++
Sbjct: 123 PLDMRMDPTRGQSAAEWLQTAEEDDIAWVIKTFGEERFGKRIARAIVERNRIQPMTRTKE 182

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ +I   +   K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L ++SF
Sbjct: 183 LAEVIAAAMPV-KDKHKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSIISF 241

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305
           HSLEDR+VK+F   +S        +  + A          +++ K  ++P +E+VA N R
Sbjct: 242 HSLEDRIVKRFMREQSRGPQVPAGIPMTEAQLKKLGGRELRALGK--LMPGEEEVAENPR 299

Query: 306 SRSAKLRAGMRT 317
           +RS+ LR   RT
Sbjct: 300 ARSSVLRIAERT 311


>gi|50914761|ref|YP_060733.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes
           MGAS10394]
 gi|50903835|gb|AAT87550.1| S-adenosyl-methyltransferase [Streptococcus pyogenes MGAS10394]
          Length = 337

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 105/328 (32%), Positives = 174/328 (53%), Gaps = 15/328 (4%)

Query: 1   MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS- 59
           ++  + K M+   H     HV VLL + + +L+  P  + +DAT G  G+S         
Sbjct: 14  LKYGTIKVMTKEFH-----HVTVLLHETVDMLDIKPDGIYVDATLGGSGHSAYLLSKLGE 68

Query: 60  --NVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGVD---GVVFDLG 112
             ++   D+D  A+   Q T++ Y  K Q +  +  F  L+  +   GVD   G+++DLG
Sbjct: 69  EGHLYCFDQDQKAIDNAQVTLKSYIDKGQVTFIKDNFRHLKARLTALGVDEIDGILYDLG 128

Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASR 171
           VSS Q+D  +RGFS+++  PLDMRM    + +A +VVN     DL +I    GE+K + +
Sbjct: 129 VSSPQLDERERGFSYKQDAPLDMRMDRQSLLTAYEVVNTYPFNDLVKIFFKYGEDKFSKQ 188

Query: 172 IAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQ 230
           IA  I + R   P +TT +L+ LI+      +   + HPA + FQA+RI VN+E+    +
Sbjct: 189 IARKIEQARAIKPIETTTELAELIKAAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADE 248

Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK 290
            ++ A + L   G + V++FHSLEDRL K+ F   S   +     +        F+ +++
Sbjct: 249 SIQEAMELLALDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPLIPEDMKPKFELVSR 308

Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMRTV 318
           K ++P+  ++A N+R+ SAKLR   +  
Sbjct: 309 KPILPSHSELAANKRAHSAKLRVAKKIR 336


>gi|228474969|ref|ZP_04059697.1| S-adenosyl-methyltransferase MraW [Staphylococcus hominis SK119]
 gi|314936659|ref|ZP_07844006.1| S-adenosyl-methyltransferase MraW [Staphylococcus hominis subsp.
           hominis C80]
 gi|228270954|gb|EEK12342.1| S-adenosyl-methyltransferase MraW [Staphylococcus hominis SK119]
 gi|313655278|gb|EFS19023.1| S-adenosyl-methyltransferase MraW [Staphylococcus hominis subsp.
           hominis C80]
          Length = 311

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 103/308 (33%), Positives = 162/308 (52%), Gaps = 9/308 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  HV V+L++ I  L+     + +D T G  G++            +IA+D+D  A+  
Sbjct: 1   MFHHVSVMLKETIDELDIKEDGIYVDCTLGGAGHALYLLNQLNDDGRLIAIDQDTTALEN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E +RD+  + +     F +L D + + G   VDG+ +DLGVSS Q+D  +RGFS+   
Sbjct: 61  AKEVLRDHLHKVTFVHNNFRELTDILKNLGIEKVDGIYYDLGVSSPQLDIPERGFSYHHD 120

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM  +  ++A DVVN    + L +I    GEEK + +IA  I   R+  P +TT 
Sbjct: 121 AKLDMRMDQTQELTAYDVVNDWPYEALVKIFYRYGEEKFSKQIARRIEAHREQQPIETTL 180

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I++ +    +    HPA R FQA+RI VN+E+      +  A + +K  G + V+
Sbjct: 181 ELVDIIKEGIPAKARRKGGHPAKRIFQAIRIAVNDELSAFEDSIEQAIEHVKVKGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F          R   I   A+    + + +K +  T+ED+  N R+R
Sbjct: 241 TFHSLEDRLCKQIFQEYEKGPDVPRGLPIIPEAYTPKLKRVNRKPITATEEDLDENNRAR 300

Query: 308 SAKLRAGM 315
           SAKLR   
Sbjct: 301 SAKLRVAE 308


>gi|323340611|ref|ZP_08080863.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Lactobacillus ruminis ATCC 25644]
 gi|323091734|gb|EFZ34354.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Lactobacillus ruminis ATCC 25644]
          Length = 316

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 112/313 (35%), Positives = 171/313 (54%), Gaps = 13/313 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
           T  +HV VLL + +  LN  P  V +D T G GG+++           + + D+D  A+ 
Sbjct: 2   TEFEHVTVLLNEAVEGLNIKPDGVYVDCTLGGGGHTKKILSELSEKGRLYSFDQDQTAID 61

Query: 73  CGQETMRDY--KEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSF 127
             +E +++   K + +L ++ F  +   +  +    VDG+V+DLGVSS Q D G+RGFS+
Sbjct: 62  YNEEQLKNEIEKGRLTLIKSNFRNIASELEKRDVLSVDGIVYDLGVSSPQFDVGERGFSY 121

Query: 128 QKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           Q    LDMRM  +  ++A  +VN+ +  DL RI    GEEK A  IA  I K RQ+   +
Sbjct: 122 QHDAVLDMRMDQTNDLTAETIVNEWSYNDLVRIFVRYGEEKFAKSIARRIEKDRQNERIK 181

Query: 187 TTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           TT  L  LI++ +    +    HPA + FQA+RI VN+E+  L + L  A   L   G +
Sbjct: 182 TTGQLVELIKEGIPAKARRKGGHPAKKVFQAIRIAVNDELGVLEESLEEAFGLLSLHGRI 241

Query: 246 IVVSFHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            V++F SLEDRLVK  F  ++   ++     +IP    P  F+ I KK ++PT+E++  N
Sbjct: 242 SVITFQSLEDRLVKSMFREKTSLPELPPGLPVIPREMQP-EFKLINKKPILPTEEELENN 300

Query: 304 RRSRSAKLRAGMR 316
            R+ SAKLR   +
Sbjct: 301 HRAHSAKLRIIEK 313


>gi|49475863|ref|YP_033904.1| S-adenosyl-methyltransferase MraW [Bartonella henselae str.
           Houston-1]
 gi|54036186|sp|Q6G2P7|RSMH_BARHE RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|49238671|emb|CAF27917.1| hypothetical protein BH11320 [Bartonella henselae str. Houston-1]
          Length = 346

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 161/322 (50%), Positives = 213/322 (66%), Gaps = 3/322 (0%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+PVLL+ V+A L P  G  ++D TFGAGGY+R+    G+ VIALDRDP A+  GQ  + 
Sbjct: 25  HIPVLLQPVLAGLIPLVGAKVIDGTFGAGGYTRALLNAGAQVIALDRDPHAIREGQSLVD 84

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
           ++  +  L Q  FSQL D V ++ VD V+ D+GVSSMQ+D  +RGFSFQK GPLDMRM+ 
Sbjct: 85  EFFPRLRLVQGNFSQL-DCVVEEKVDAVILDIGVSSMQLDEAERGFSFQKDGPLDMRMAQ 143

Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199
           +G +A+DVVN+    +L RI  ILGEE+ A RIA  I KRR   PF  T DL+  I+  V
Sbjct: 144 TGFTAADVVNRLKSDELARIFKILGEERYARRIARMIEKRRCVQPFLRTGDLAHAIEVLV 203

Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259
                 RIHPATR FQALRI+VN+EI ELA+GL +AE+ LK GG L VVSFHSLEDR+VK
Sbjct: 204 GRKSGERIHPATRVFQALRIYVNDEIGELARGLFAAERVLKPGGRLGVVSFHSLEDRMVK 263

Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319
           +FF++RSG+ +  R++      PA F  + K  +   +E++  N RSRSA+LR G+RT  
Sbjct: 264 RFFSARSGESVRSRYLPEIEMAPATFFPLFKGGITANKEELERNPRSRSARLRIGVRTEA 323

Query: 320 RSIEDDSFVHLPRLPTLSQFRG 341
             +  D  + L  L  ++ F G
Sbjct: 324 ECLFAD--MKLFGLAKIASFEG 343


>gi|254303471|ref|ZP_04970829.1| cell envelope biogenesis S-adenosylmethionine (SAM)-dependent
           methyltransferase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148323663|gb|EDK88913.1| cell envelope biogenesis S-adenosylmethionine (SAM)-dependent
           methyltransferase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 314

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 106/308 (34%), Positives = 173/308 (56%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+PVL  + +  L   P  + +D T G G +S    +  S+   +I++D+D  A+   ++
Sbjct: 9   HIPVLYYETLDNLVKNPDGIYIDCTLGGGSHSEGILERLSDKGLLISIDQDTNAIEYSKK 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  +  ++ +F+  F  +       GVD   G++ D+GVSS Q+D  DRGFS++    L
Sbjct: 69  RLEKFGSKWKVFKGNFENIDTIAYMAGVDKVDGILMDIGVSSKQLDDPDRGFSYRYDVKL 128

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+    ISA DVVN  + + L++I+   GEE+ A +IA  IV+ R+S+P + T DL 
Sbjct: 129 DMRMNTEQKISAYDVVNTYSEEQLSKIIFEYGEERHARKIAKLIVEERKSSPIEKTSDLI 188

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +LI++     +    HPA ++FQA+RI VN E+E L   +  A + LK GG L +++FHS
Sbjct: 189 TLIKRAYP--ERASKHPAKKTFQAIRIEVNRELEVLENAMSKAVELLKVGGRLAIITFHS 246

Query: 253 LEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK  F   +      +   I        F+ +TKK ++P  +++  N R+ S+KL
Sbjct: 247 LEDRIVKNKFKDLATACKCPKDIPICVCGGVKKFEIVTKKPIIPIDDELKNNNRAHSSKL 306

Query: 312 RAGMRTVE 319
           R   R ++
Sbjct: 307 RILERILD 314


>gi|23012863|ref|ZP_00052852.1| COG0275: Predicted S-adenosylmethionine-dependent methyltransferase
           involved in cell envelope biogenesis [Magnetospirillum
           magnetotacticum MS-1]
          Length = 319

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 142/319 (44%), Positives = 195/319 (61%), Gaps = 8/319 (2%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSC 73
            ++  H+PVLL +VIA L P  G   +D TFGAGGYSR+     + +V A+DRDP AV+ 
Sbjct: 2   SSLPPHIPVLLTEVIAALAPRDGGAYVDGTFGAGGYSRAILSAAACHVHAIDRDPSAVAR 61

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130
           G+        +FS+ +  F  +   + ++GV   DG+  D+GVSSMQID  +RGFSF K 
Sbjct: 62  GKTLEEASAGRFSMIEGRFGDMAALLRERGVNQVDGIALDIGVSSMQIDQPERGFSFAKD 121

Query: 131 GPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           GPLDMRM   G SA+D+VN     +L  I+   GEE+ + R+A AIV+ R+   F+ T +
Sbjct: 122 GPLDMRMETKGPSAADMVNDTPEGELANIIYRYGEERLSRRVAKAIVEARRIKRFERTGE 181

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ +I++ V  S  + I PATR+FQALRI VN+E+ EL +GL +AE  L  GG L VV+F
Sbjct: 182 LAEVIRRVVPRS-GDGIDPATRTFQALRIAVNDELGELERGLEAAEHLLAPGGHLAVVTF 240

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPS---NAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           HSLEDR+VK F  SRSG+       +P    N   A F  +++K + P QE+   N R+R
Sbjct: 241 HSLEDRVVKSFLKSRSGEASRPSRHVPQAQDNGPAASFTLLSRKAIAPGQEESRANPRAR 300

Query: 308 SAKLRAGMRTVERSIEDDS 326
           SAKLRA  RT   +    S
Sbjct: 301 SAKLRAAARTEAPAWGAAS 319


>gi|259503028|ref|ZP_05745930.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Lactobacillus antri DSM 16041]
 gi|259168894|gb|EEW53389.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Lactobacillus antri DSM 16041]
          Length = 317

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 114/311 (36%), Positives = 177/311 (56%), Gaps = 13/311 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76
           +HV VLL++ +A LN  P    +D T G GG++ +        ++ + D+D  A+   ++
Sbjct: 7   NHVTVLLKEAVAGLNIRPTGTYVDGTLGGGGHTSAILGQLTTGHLYSFDQDETAIDYNRD 66

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            + D     + +L +  F  LQ  +   GV   DGV++DLGVSS Q D   RGFS++   
Sbjct: 67  QLNDAIAAGKLTLVEDNFRHLQQALAAHGVRRVDGVLYDLGVSSPQFDDAQRGFSYKLDA 126

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+    +SA +VVN+   + L RIL   GEE+ A +IA  I +RRQ  P +TT +
Sbjct: 127 PLDMRMNQDQSLSAMEVVNEWPYERLVRILYRYGEERFAKQIARKIEQRRQREPIRTTFE 186

Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I++ +  + + +  HPA +SFQA+RI VN+E+  L + L  A   L  GG + V++
Sbjct: 187 LVDVIKEAIPAAARRHGGHPAKKSFQAVRIAVNDELGALEESLEQALAMLTVGGRISVIT 246

Query: 250 FHSLEDRLVKKFFASRSG---KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           F SLEDRLVK  F  +S     +     +IP+   P  F+ I +K ++P+ +++A N R+
Sbjct: 247 FQSLEDRLVKTLFREKSSLSADLPQGLPVIPAGMSP-DFKLINRKPILPSAQELAANHRA 305

Query: 307 RSAKLRAGMRT 317
            SAKLR   + 
Sbjct: 306 HSAKLRIIEKI 316


>gi|227512227|ref|ZP_03942276.1| S-adenosyl-methyltransferase [Lactobacillus buchneri ATCC 11577]
 gi|227084621|gb|EEI19933.1| S-adenosyl-methyltransferase [Lactobacillus buchneri ATCC 11577]
          Length = 315

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 111/310 (35%), Positives = 173/310 (55%), Gaps = 12/310 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76
            HV VLL + +  L+  P    +DAT G GG++    K     ++ + D+D  A+S  Q+
Sbjct: 5   KHVTVLLHEAVDGLDVDPNGTYVDATLGGGGHTTEILKRIDKGHLYSFDQDEEAISYNQQ 64

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +R Y   ++ SL    F  ++  + D+G+   DG+V+DLGVSS Q D   RGFS++   
Sbjct: 65  HLRQYVENDKLSLIHDNFRNIKVALADQGISKIDGIVYDLGVSSPQFDEAGRGFSYRFEA 124

Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM       A  V+N+   + L RI    GEEK + +IA  I + R+  P  TT D
Sbjct: 125 RLDMRMDQDNPVDAWKVINEWPYEKLVRIFYRYGEEKFSKQIARRIERTREDHPINTTTD 184

Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L +LI++ +  + + +  HPA + FQA+RI VN+E+  L   L  + + L  GG + V++
Sbjct: 185 LVTLIKEAIPAAARRHGGHPAKKVFQAVRIAVNDELSALEDSLEQSLELLAVGGRISVIT 244

Query: 250 FHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           F SLEDRLVK  F  ++   ++     +IP    P  ++ IT+K ++P ++++A N R+ 
Sbjct: 245 FQSLEDRLVKTMFKEKASLPELPPNLPVIPKELQPK-YKLITRKPIIPNEDELADNHRAH 303

Query: 308 SAKLRAGMRT 317
           SAKLR   RT
Sbjct: 304 SAKLRIIERT 313


>gi|314933355|ref|ZP_07840720.1| S-adenosyl-methyltransferase MraW [Staphylococcus caprae C87]
 gi|313653505|gb|EFS17262.1| S-adenosyl-methyltransferase MraW [Staphylococcus caprae C87]
          Length = 311

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 99/308 (32%), Positives = 161/308 (52%), Gaps = 9/308 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  HV V+L + I  LN     V +D T G  G++            +IA+D+D  A+  
Sbjct: 1   MFHHVSVMLNETIDYLNIKEDGVYVDCTLGGAGHALYLLNQLNDEGRLIAIDQDLTALEN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +  ++++  + +   + F +L + + D   + VDG+ +DLGVSS Q+D  +RGFS+   
Sbjct: 61  AKVVLKEHLHKVTFVHSNFRELTNILKDLNIEKVDGIYYDLGVSSPQLDVPERGFSYHHD 120

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM  +  +SA +VVN+ + + L +I    GEEK + +IA  I   R+  P +TT 
Sbjct: 121 AKLDMRMDQTQSLSAFEVVNEWSYEALVKIFYRYGEEKFSKQIARRIEANREQHPIETTL 180

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L  +I++ +    +    HPA R FQA+RI VN+E+      +  A +++   G + V+
Sbjct: 181 QLVDVIKEGIPAKARRKGGHPAKRVFQAIRIAVNDELSAFEDSIEQAIESVNINGRISVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDRL K+ F          R   I    +    + + +K +  T+ED+  N R+R
Sbjct: 241 TFHSLEDRLCKQIFQEYEKGPEVPRGIPIIPEGYSPKLKRVNRKPITATEEDLDENNRAR 300

Query: 308 SAKLRAGM 315
           SAKLR   
Sbjct: 301 SAKLRVAE 308


>gi|227509375|ref|ZP_03939424.1| S-adenosyl-methyltransferase [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227191087|gb|EEI71154.1| S-adenosyl-methyltransferase [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 315

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 110/310 (35%), Positives = 173/310 (55%), Gaps = 12/310 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76
            HV VLL + +  L+  P    +DAT G GG++    K     ++ + D+D  A+S  Q+
Sbjct: 5   KHVTVLLHEAVDGLDVDPNGTYVDATLGGGGHTTEILKRIDKGHLYSFDQDEEAISYNQQ 64

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +R Y   ++ +L    F  ++  + D+G+   DG+V+DLGVSS Q D   RGFS++   
Sbjct: 65  HLRQYVENDKLTLIHDNFRNIKGALADRGISKIDGIVYDLGVSSPQFDEAGRGFSYRFEA 124

Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM       A  V+N+   + L RI    GEEK + +IA  I + R+  P  TT D
Sbjct: 125 RLDMRMDQDNPVDAWKVINEWPYEKLVRIFYRYGEEKFSKQIARRIERTREDHPINTTTD 184

Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L +LI++ +  + + +  HPA + FQA+RI VN+E+  L   L  + + L  GG + V++
Sbjct: 185 LVTLIKEAIPAAARRHGGHPAKKVFQAVRIAVNDELSALEDSLEQSLELLAVGGRISVIT 244

Query: 250 FHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           F SLEDRLVK  F  ++   ++     +IP    P  ++ IT+K ++P ++++A N R+ 
Sbjct: 245 FQSLEDRLVKTMFKEKASLPELPPNLPVIPKELQPK-YKLITRKPIIPNEDELADNHRAH 303

Query: 308 SAKLRAGMRT 317
           SAKLR   RT
Sbjct: 304 SAKLRIIERT 313


>gi|254486962|ref|ZP_05100167.1| S-adenosyl-methyltransferase MraW [Roseobacter sp. GAI101]
 gi|214043831|gb|EEB84469.1| S-adenosyl-methyltransferase MraW [Roseobacter sp. GAI101]
          Length = 330

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 145/326 (44%), Positives = 201/326 (61%), Gaps = 6/326 (1%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRD 67
           M++A       H PVLL  ++A + P      LD TFGAGGY+R     G++ VIA+DRD
Sbjct: 1   MTAASDTPSAPHTPVLLRPLLAAVAPV-YGRWLDGTFGAGGYTRGLLDAGADQVIAVDRD 59

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
           P A         +Y ++  + Q  FS++ +Y   + +DGVV DLGVSSMQ+D  +RGFSF
Sbjct: 60  PLAFEMAASWAGEYGDRLIMQQGVFSRMDEYA--QNLDGVVLDLGVSSMQLDLAERGFSF 117

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
            + GPLDMRMS  G SA+D+VN+A  + +  IL   GEE+ + RIA AIV++R+ AP  T
Sbjct: 118 MRDGPLDMRMSQEGPSAADIVNEAEEEIIANILFQFGEERASRRIAKAIVRQREEAPITT 177

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T +L+ L++  +  SK  + HPATRSFQALRI VNNE  EL +GL +AE+ALK GG L V
Sbjct: 178 TLELARLVESCLPRSKPGQSHPATRSFQALRIAVNNEYGELFEGLMAAERALKPGGQLAV 237

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPS-NAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+FHS+EDR+VK+F  +R+G         P   + P  F    +K + P  +++  N RS
Sbjct: 238 VTFHSVEDRMVKRFLTARAGAGGNANRFAPEMESEPPQFIVKKRKAIGPDAQELEENPRS 297

Query: 307 RSAKLRAGMRTVERSIE-DDSFVHLP 331
           RSAKLR  +RT   +   D   + +P
Sbjct: 298 RSAKLRVAIRTDAPAGAVDAKSIGMP 323


>gi|145297477|ref|YP_001140318.1| S-adenosyl-methyltransferase MraW [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|263446607|sp|A4SI48|RSMH_AERS4 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|142850249|gb|ABO88570.1| S-adenosyl-methyltransferase MraW [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 312

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 122/313 (38%), Positives = 176/313 (56%), Gaps = 14/313 (4%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSC 73
             +H+ VLL + +  L   P  + +D TFG GG+SR   +       +IA+DRDP A++ 
Sbjct: 4   AAEHITVLLHEAVEGLAIKPDGIYVDGTFGRGGHSRLILQHLGPNGRLIAIDRDPQAIA- 62

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQK 129
             E  +    +F +    FS +  Y+ ++G    VDG + DLGVSS Q+D  +RGFSF K
Sbjct: 63  --EAAKIQDPRFEIVHGPFSGIVSYLDERGLLGKVDGFLLDLGVSSPQLDDAERGFSFMK 120

Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM   SG SA+  + +A+V D+  +L   GEE+ A +IA AIV  R + P+  T
Sbjct: 121 DGPLDMRMDPTSGQSAAQWLARADVDDIAWVLKTFGEERFAKKIARAIVHDRVTEPYVRT 180

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           + L+ +I +    SK    H ATRSFQA+RI++N+E++E+   L  A +AL   G L V+
Sbjct: 181 RQLAEMIARVNP-SKEKGKHAATRSFQAIRIYINSELDEIETALNGALQALAPEGRLSVI 239

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI--TKKVVVPTQEDVAFNRRS 306
           SFHSLEDRLVK F           R +  + A  A  + +    K + P++ +V  N RS
Sbjct: 240 SFHSLEDRLVKHFIRKHEKGPEVPRGIPLTEAQLAGGRKLKSVGKALKPSEHEVTENSRS 299

Query: 307 RSAKLRAGMRTVE 319
           RS+ LR   R  E
Sbjct: 300 RSSVLRVAQRLAE 312


>gi|317050381|ref|YP_004111497.1| S-adenosyl-methyltransferase MraW [Desulfurispirillum indicum S5]
 gi|316945465|gb|ADU64941.1| S-adenosyl-methyltransferase MraW [Desulfurispirillum indicum S5]
          Length = 316

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 123/324 (37%), Positives = 185/324 (57%), Gaps = 21/324 (6%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGK---VILDATFGAGGYSRSFCKMGS--NVIA 63
           MS+  H     H+PVL + V++ L PA      +++D T G GG+S    +      +I 
Sbjct: 1   MSTTFH-----HIPVLADAVLSSLGPALNAEQPLLVDCTVGGGGHSSLILEHCPSVRIIG 55

Query: 64  LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQI 118
           +D+DP A+    + +    E+F+  +  F+QL   +    V     +G ++DLGVSS Q+
Sbjct: 56  IDQDPAALQACSDRL---GERFTPLRGNFAQLHRLLKQANVAPSSVNGFLYDLGVSSHQL 112

Query: 119 DCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177
           D  +RGFSF   GPLDMRM  S  +SA+DVVN  + ++L RI+   GEE+ + R+A  I 
Sbjct: 113 DTPERGFSFLSDGPLDMRMDPSAPLSAADVVNTYSEEELARIIHAYGEERHSRRVARVIA 172

Query: 178 KRRQSAPFQTTQDLSSLI-QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236
             R+  PF TT++L+ LI +    F +N  IHPATR+FQALRI VN E++ +   L SA 
Sbjct: 173 ACRREKPFTTTKELADLIHRDIAKFYRNESIHPATRTFQALRIEVNGELDAITTSLESAL 232

Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVP 295
             L+ GG+L V+SFHSLEDR++K+FF   +   +    +      H  + + +T+K ++ 
Sbjct: 233 TYLRPGGILAVISFHSLEDRIIKQFFRQHASTCICPPEVWQCRCQHQPLLEILTRKPLIA 292

Query: 296 TQEDVAFNRRSRSAKLRAGMRTVE 319
            + +   N RSRSAKLR   RT  
Sbjct: 293 DEAEKQLNPRSRSAKLRVARRTSA 316


>gi|82775489|ref|YP_401836.1| S-adenosyl-methyltransferase MraW [Shigella dysenteriae Sd197]
 gi|309787242|ref|ZP_07681854.1| S-adenosyl-methyltransferase MraW [Shigella dysenteriae 1617]
 gi|88909218|sp|Q32K10|RSMH_SHIDS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|81239637|gb|ABB60347.1| putative apolipoprotein [Shigella dysenteriae Sd197]
 gi|308924820|gb|EFP70315.1| S-adenosyl-methyltransferase MraW [Shigella dysenteriae 1617]
          Length = 313

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 118/312 (37%), Positives = 179/312 (57%), Gaps = 19/312 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++  +
Sbjct: 6   KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +FS+    FS L +YV ++     +DG++ DLGVSS Q+D  +RGFSF + G
Sbjct: 66  TI---DDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDG 122

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   T++
Sbjct: 123 PLDMRMDPTCGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKE 182

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L ++SF
Sbjct: 183 LAEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISF 241

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305
           HSLEDR+VK+F    S        +  +            +++ K  ++P +E+VA N R
Sbjct: 242 HSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGK--LMPGEEEVAENPR 299

Query: 306 SRSAKLRAGMRT 317
           +RS+ LR   RT
Sbjct: 300 ARSSVLRIAERT 311


>gi|195978690|ref|YP_002123934.1| S-adenosyl-methyltransferase MraW [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|262826706|sp|B4U4K4|RSMH_STREM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|195975395|gb|ACG62921.1| S-adenosyl-methyltransferase MraW [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 316

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 104/320 (32%), Positives = 171/320 (53%), Gaps = 15/320 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           M++  H     HV VLL + + +L+  P  + +DAT G  G+S     +     ++   D
Sbjct: 1   MTNEFH-----HVTVLLHEAVDMLDIKPDGIYVDATLGGSGHSAYLLSLLGDKGHLYCFD 55

Query: 66  RDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120
           +D  A+   QE ++ Y  K Q +  +  F  L+  + + GV   DG+++DLGVSS Q+D 
Sbjct: 56  QDQKAIDHAQEQLKPYIDKGQVTFIKDNFRHLKARLLEHGVTEIDGILYDLGVSSPQLDE 115

Query: 121 GDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS+++  PLDMRM   + ++A +VVN  +  DL RI    GE+K + +IA  I + 
Sbjct: 116 RERGFSYKQDAPLDMRMDSQAALTAYEVVNTYDFNDLVRIFFKYGEDKFSKQIARKIEQA 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R   P  TT +L++LI+      +   + HPA + FQA+RI VN+E+      ++ A + 
Sbjct: 176 RAIKPISTTTELAALIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADASIQQAIEL 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L   G + V++FHSLEDRL K  F   S            +      + +++K ++P+Q+
Sbjct: 236 LALDGRISVITFHSLEDRLTKHLFKEASTADAPKGLPFIPDELKPKLELVSRKPILPSQK 295

Query: 299 DVAFNRRSRSAKLRAGMRTV 318
           ++  N R+ SAKLR   +  
Sbjct: 296 ELMANNRAHSAKLRVARKVR 315


>gi|295098586|emb|CBK87676.1| S-adenosyl-methyltransferase MraW [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 313

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 119/312 (38%), Positives = 180/312 (57%), Gaps = 19/312 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++  Q
Sbjct: 6   KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGAEGRLLAIDRDPQAIAVAQ 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +FS+    FS L DYV ++G    +DG++ DLGVSS Q+D  +RGFSF + G
Sbjct: 66  TI---DDPRFSIVHGPFSALADYVAERGLTGKIDGILLDLGVSSPQLDDAERGFSFMRDG 122

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + G SA++ +  A+  D+  ++   GEE+   RIA AIV+R +  P   T++
Sbjct: 123 PLDMRMDPTRGQSAAEWLQTADEADIAWVIKTFGEERFGKRIARAIVERNRVEPMTRTKE 182

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ +I       K+   HPATR+FQA+RI+VN+E+EE+   L+S+   L  GG L ++SF
Sbjct: 183 LAEVIAAATPV-KDKHKHPATRTFQAVRIWVNSELEEIELALKSSLDVLAPGGRLSIISF 241

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNRR 305
           HSLEDR+VK+F   +S        +  +            +++ K  ++P +E+VA N R
Sbjct: 242 HSLEDRIVKRFMREQSRGPQVPAGLPMTEEQLRKLGGRQLRALGK--LMPGEEEVAENPR 299

Query: 306 SRSAKLRAGMRT 317
           +RS+ LR   RT
Sbjct: 300 ARSSVLRIAERT 311


>gi|292669650|ref|ZP_06603076.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Selenomonas noxia ATCC 43541]
 gi|292648447|gb|EFF66419.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Selenomonas noxia ATCC 43541]
          Length = 310

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 113/307 (36%), Positives = 162/307 (52%), Gaps = 10/307 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQ 75
            HV VL E+ +  LN  P    +D T G  G++            +I +D+D  A++  Q
Sbjct: 4   HHVSVLPEETLNALNITPNGTYVDCTLGGAGHAGRIAARLSPEGRLIGIDQDEAAIAAAQ 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E + D   Q +L +  F  L   +   GVD   GV+FDLG+SS QID  +RGFS+ +  P
Sbjct: 64  ERLADAACQVTLVRDNFRNLSAILAGAGVDSTDGVLFDLGISSPQIDTAERGFSYMQDAP 123

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM   +G SA  VVN+    +L  I    GEE+ A RIA  I + R++ P +TT  L
Sbjct: 124 LDMRMDRRAGRSARSVVNEYTAAELMEIFYNYGEERWAKRIAAFIEEERKAHPIETTGQL 183

Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
            ++I + V    +    HPA R FQA+RI VN E+  L   L +A +AL+ GG L V++F
Sbjct: 184 VAVIDRAVPKKTRAKGGHPAKRVFQAIRIEVNEELTILEGALTAAVRALRPGGRLAVITF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VKK     +   +   H  +    H    + I  K  + +  + A N R++SA
Sbjct: 244 HSLEDRIVKKTLKRFAQGCICPPHTPVCVCGHTPELRLI-GKPQMASAVECAENPRAKSA 302

Query: 310 KLRAGMR 316
           KLR   +
Sbjct: 303 KLRTAEK 309


>gi|332522739|ref|ZP_08398991.1| S-adenosyl-methyltransferase MraW [Streptococcus porcinus str.
           Jelinkova 176]
 gi|332314003|gb|EGJ26988.1| S-adenosyl-methyltransferase MraW [Streptococcus porcinus str.
           Jelinkova 176]
          Length = 316

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 102/320 (31%), Positives = 166/320 (51%), Gaps = 15/320 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65
           M+   H     H+ VLL + + +L   P  + +DAT G  G+S           ++   D
Sbjct: 1   MTKEFH-----HITVLLHETVDMLRVKPDGIYVDATLGGAGHSAYLLSQLNEHGHLYCFD 55

Query: 66  RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDC 120
           +D  A+   Q  +  + E+   +  +  F  L+  +   GVD   G+++DLGVSS Q+D 
Sbjct: 56  QDQKAIDNAQIFLAPFIEKGMVTFIKDNFRHLKSQMQAHGVDSIDGILYDLGVSSPQLDE 115

Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS+++  PLDMRM     ++A  VVN  +  DL RI    GE++ + +IA  I + 
Sbjct: 116 RERGFSYRQDAPLDMRMDSDASLTAYHVVNDYSFNDLVRIFFRYGEDRFSKQIARKIEQA 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R   P +TT +L+ LI+      +   + HPA + FQA+RI VN+E+    + L+ A   
Sbjct: 176 RAIKPIETTTELAELIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAAEESLQQAMDL 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L   G + V++FHSLEDRL K+ F   S   +              F+ +++K ++P++E
Sbjct: 236 LAVEGHISVITFHSLEDRLTKQLFKEASVVDVPKGIPFIPEEMQPKFELVSRKPILPSKE 295

Query: 299 DVAFNRRSRSAKLRAGMRTV 318
           ++A N R+ SAKLR   +  
Sbjct: 296 ELAENNRAHSAKLRVARKIR 315


>gi|323144058|ref|ZP_08078702.1| S-adenosyl-methyltransferase MraW [Succinatimonas hippei YIT 12066]
 gi|322416171|gb|EFY06861.1| S-adenosyl-methyltransferase MraW [Succinatimonas hippei YIT 12066]
          Length = 316

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 128/311 (41%), Positives = 173/311 (55%), Gaps = 18/311 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H+PVLL + +A LN  P  + +DATFG GG+SR   K       + ALDRD  A+   + 
Sbjct: 5   HIPVLLNETLAGLNINPDGIYVDATFGRGGHSREILKRLNKNGRLYALDRDLSAIEAAKS 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                 E+FS+  A FSQL++   D G    V+G++ D+GVSS Q+D   RGFSF K GP
Sbjct: 65  IA---DERFSIVHARFSQLKEVCEDFGILGKVNGILMDIGVSSPQLDDASRGFSFDKDGP 121

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S  I A+ +VN  + KDL  I    GEE+ A ++A+AIV++R+  PF TT  L
Sbjct: 122 LDMRMDQSAKIDAALIVNTYDAKDLAYIFKTYGEERFAGKVANAIVRQREKTPFTTTLAL 181

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI  ++   K    H ATR FQALRI VN+E+EEL   L  +   L   G L V+SFH
Sbjct: 182 ADLISASIP-GKPGPKHKATRCFQALRIAVNSELEELKSALDGSIDVLDKDGRLCVISFH 240

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT------KKVVVPTQEDVAFNRR 305
           SLEDR+VK F    S      R +  ++   A  +  +         +  T  +++ N R
Sbjct: 241 SLEDRIVKTFIRENSEGPKLPRGLPITDEELAELKLKSCTLQKISGAIKATDAEISQNPR 300

Query: 306 SRSAKLRAGMR 316
           SRSA LR   R
Sbjct: 301 SRSAVLRVAAR 311


>gi|322421370|ref|YP_004200593.1| S-adenosyl-methyltransferase MraW [Geobacter sp. M18]
 gi|320127757|gb|ADW15317.1| S-adenosyl-methyltransferase MraW [Geobacter sp. M18]
          Length = 312

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 117/308 (37%), Positives = 172/308 (55%), Gaps = 9/308 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            H+ VL ++V+ LL P  G + +D T G  G++            +I  DRD  A++  +
Sbjct: 5   HHISVLPDEVLGLLAPKSGGIYVDGTLGGAGHAGLILAASAPQGQLIGFDRDAEAIAVAK 64

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVV---FDLGVSSMQIDCGDRGFSFQKSGP 132
           E +  + ++  +FQ  FS +   + + GVD +     DLGVSS Q+D  +RGFSFQ   P
Sbjct: 65  ERLAPFGDRVRIFQRNFSSIAQTLAEIGVDAIDGFVLDLGVSSHQLDKDERGFSFQADAP 124

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM   SG SA+D+VN  +  +L RI+   GEE+ A R+A  IVK R+  P +TT  L
Sbjct: 125 LDMRMDRSSGPSAADLVNTLSEAELNRIIAEYGEERWAKRVASFIVKAREERPIETTMQL 184

Query: 192 SSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+  +  +K   R+HPATR+FQ LRI VN E++ L  GL    K LK GG   V+SF
Sbjct: 185 VDIIKGAIPKAKWEERLHPATRTFQGLRIAVNEELKSLQLGLTDLLKLLKRGGRGAVISF 244

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK+ F   +      +   I        ++ +TKK +   ++++  N RSRSA
Sbjct: 245 HSLEDRIVKEAFRDAAAGCTCPKELPICVCGRVPQYKVLTKKALKAGEKELNANPRSRSA 304

Query: 310 KLRAGMRT 317
           +LR   + 
Sbjct: 305 RLRGIEKI 312


>gi|15675533|ref|NP_269707.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes M1 GAS]
 gi|19746583|ref|NP_607719.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes MGAS8232]
 gi|21910939|ref|NP_665207.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes MGAS315]
 gi|28895371|ref|NP_801721.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes SSI-1]
 gi|71904072|ref|YP_280875.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes MGAS6180]
 gi|71911181|ref|YP_282731.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes MGAS5005]
 gi|94988995|ref|YP_597096.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes MGAS9429]
 gi|94990995|ref|YP_599095.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes
           MGAS10270]
 gi|94992888|ref|YP_600987.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes MGAS2096]
 gi|306826911|ref|ZP_07460211.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes ATCC
           10782]
 gi|13622733|gb|AAK34428.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS]
 gi|19748798|gb|AAL98218.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232]
 gi|21905146|gb|AAM80010.1| putative S-adenosyl-methyltransferase MraW [Streptococcus pyogenes
           MGAS315]
 gi|28810617|dbj|BAC63554.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1]
 gi|71803167|gb|AAX72520.1| S-adenosyl-methyltransferase [Streptococcus pyogenes MGAS6180]
 gi|71853963|gb|AAZ51986.1| S-adenosyl-methyltransferase [Streptococcus pyogenes MGAS5005]
 gi|94542503|gb|ABF32552.1| S-adenosyl-methyltransferase [Streptococcus pyogenes MGAS9429]
 gi|94544503|gb|ABF34551.1| S-adenosyl-methyltransferase mraW [Streptococcus pyogenes
           MGAS10270]
 gi|94546396|gb|ABF36443.1| S-adenosyl-methyltransferase mraW [Streptococcus pyogenes MGAS2096]
 gi|304430929|gb|EFM33938.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes ATCC
           10782]
          Length = 337

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 104/328 (31%), Positives = 173/328 (52%), Gaps = 15/328 (4%)

Query: 1   MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS- 59
           ++  + K M+   H     HV VLL + + +L+  P  + +DAT G  G+S         
Sbjct: 14  LKYGTIKVMTKEFH-----HVTVLLHETVDMLDIKPDGIYVDATLGGSGHSAYLLSKLGE 68

Query: 60  --NVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGVD---GVVFDLG 112
             ++   D+D  A+   Q T++ Y  K Q +  +  F  L+  +   GVD   G+++DLG
Sbjct: 69  EGHLYCFDQDQKAIDNAQVTLKSYIDKGQVTFIKDNFRHLKARLTALGVDEIDGILYDLG 128

Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASR 171
           VSS Q+D  +RGFS+++  PLDMRM    + +A +VVN     DL +I    GE+K + +
Sbjct: 129 VSSPQLDERERGFSYKQDAPLDMRMDRQSLLTAYEVVNTYPFNDLVKIFFKYGEDKFSKQ 188

Query: 172 IAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQ 230
           IA  I + R   P +TT +L+ LI+      +   + HPA + FQA+RI VN+E+    +
Sbjct: 189 IARKIEQARAIKPIETTTELAELIKAAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADE 248

Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK 290
            ++ A + L   G + V++FHSLEDRL K+ F   S   +     +        F+ +++
Sbjct: 249 SIQDAMELLALDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPLIPEDMKPKFELVSR 308

Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMRTV 318
           K ++P+  ++  N+R+ SAKLR   +  
Sbjct: 309 KPILPSHSELTANKRAHSAKLRVAKKIR 336


>gi|304437331|ref|ZP_07397290.1| S-adenosyl-methyltransferase MraW [Selenomonas sp. oral taxon 149
           str. 67H29BP]
 gi|304369587|gb|EFM23253.1| S-adenosyl-methyltransferase MraW [Selenomonas sp. oral taxon 149
           str. 67H29BP]
          Length = 313

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 123/311 (39%), Positives = 167/311 (53%), Gaps = 10/311 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVS 72
           T   HV VL E+V+A LN  PG + +DAT G  G+++           +I +D+D  A++
Sbjct: 2   TEFHHVSVLPEEVVAALNVVPGGIYVDATLGGAGHAQRIAAQLSEQGRLIGIDQDETAIA 61

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQK 129
             +E + D + Q SL +  F  L   +  +GV   DG +FDLGVSS QID  +RGFS+ +
Sbjct: 62  AARERLADVRCQVSLVRDNFRHLTAILAAEGVSSVDGALFDLGVSSPQIDTPERGFSYMQ 121

Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM   +  SA DVVN    + LT I    GEE+ A RIA  I K RQ+ P  TT
Sbjct: 122 DAPLDMRMDQRARRSAYDVVNTYTAERLTEIFYTYGEERWAKRIASFIEKERQTHPITTT 181

Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            DL ++I + V    +    HPA R FQALRI VN+E+  L   L +A  AL+ GG L V
Sbjct: 182 GDLVAVIDRAVPKEVRARGGHPAKRVFQALRIEVNDELGILEGALTAAVDALRIGGRLAV 241

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           ++FHSLEDR+VK      +   +   H  I    H    + I  K    +  +   N R+
Sbjct: 242 ITFHSLEDRIVKNTLRRLAQGCICPPHTPICVCGHTPEVRLI-GKARAASAAECRVNTRA 300

Query: 307 RSAKLRAGMRT 317
           RSAKLR   + 
Sbjct: 301 RSAKLRVAEKI 311


>gi|296101245|ref|YP_003611391.1| hypothetical protein ECL_00879 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295055704|gb|ADF60442.1| hypothetical protein ECL_00879 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 313

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 119/312 (38%), Positives = 180/312 (57%), Gaps = 19/312 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++  Q
Sbjct: 6   KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGAEGRLLAIDRDPQAIAVAQ 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +FS+    FS L DYV ++G    +DG++ DLGVSS Q+D  +RGFSF + G
Sbjct: 66  TI---DDPRFSIVHGPFSALADYVAERGLTGKIDGILLDLGVSSPQLDDAERGFSFMRDG 122

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + G SA++ +  A+  D+  ++   GEE+   RIA AIV+R +  P   T++
Sbjct: 123 PLDMRMDPTRGQSAAEWLQTADEADIAWVIKTFGEERFGKRIARAIVERNRIEPMTRTKE 182

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ +I       K+   HPATR+FQA+RI+VN+E+EE+   L+S+   L  GG L ++SF
Sbjct: 183 LAEVIAAATPV-KDKHKHPATRTFQAVRIWVNSELEEIELALKSSLDVLAPGGRLSIISF 241

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNRR 305
           HSLEDR+VK+F   +S        +  +            +++ K  ++P +E+VA N R
Sbjct: 242 HSLEDRIVKRFMREQSRGPQVPAGLPMTEEQLRKLGGRQLRALGK--LMPGEEEVAENPR 299

Query: 306 SRSAKLRAGMRT 317
           +RS+ LR   RT
Sbjct: 300 ARSSVLRIAERT 311


>gi|241895696|ref|ZP_04782992.1| S-adenosyl-methyltransferase [Weissella paramesenteroides ATCC
           33313]
 gi|241871063|gb|EER74814.1| S-adenosyl-methyltransferase [Weissella paramesenteroides ATCC
           33313]
          Length = 314

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 119/313 (38%), Positives = 173/313 (55%), Gaps = 12/313 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73
           T   HV VLL + I  LN  P  V +DAT G GG+S+          + + D+D  A++ 
Sbjct: 2   TEFKHVTVLLREAIDGLNVQPDGVYVDATLGGGGHSKLLASRLSTGKLWSFDQDETAITY 61

Query: 74  GQETMRD--YKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQ 128
            QE + D     + +  Q  F  L D +  + V   DG+V+DLGVSS Q D G RGFS+ 
Sbjct: 62  NQEHLADEIAAGKVAFIQDNFRHLHDALMAEDVSTIDGIVYDLGVSSPQFDDGQRGFSYN 121

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
              PLDMRM  S  ++A  VVN+ +  +L RI    GEEK A +IA  I   R+  P +T
Sbjct: 122 YDAPLDMRMDQSQSLTARTVVNEWSFHELLRIFSRYGEEKFAKQIARKIEHEREIKPIET 181

Query: 188 TQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T +L ++I+ ++  + +    HPA R+FQA+RI VN+E+  + + L  A   L   G + 
Sbjct: 182 TFELVNIIKDSIPAAARRKGGHPAKRTFQAIRIAVNDELGAVEESLAQALDMLNVHGRIA 241

Query: 247 VVSFHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           V++FHSLEDRLVK  F  +     + A   +IP    P  F+ + +K ++P+ E++A NR
Sbjct: 242 VITFHSLEDRLVKTMFKEKVSIPDLPAGLPIIPEEMQP-DFKLVVRKPILPSDEELATNR 300

Query: 305 RSRSAKLRAGMRT 317
           R+ SAKLR   R 
Sbjct: 301 RAHSAKLRIIERI 313


>gi|34581504|ref|ZP_00142984.1| hypothetical protein [Rickettsia sibirica 246]
 gi|28262889|gb|EAA26393.1| unknown [Rickettsia sibirica 246]
          Length = 307

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 129/307 (42%), Positives = 185/307 (60%), Gaps = 5/307 (1%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQ 75
           I  HV V+L +++  L+P  G+  LD TFGAGGYS++  +     V ALDRDP  +   +
Sbjct: 2   IQSHVSVMLNEMLEALSPKAGESYLDCTFGAGGYSKAILESCNCYVTALDRDPNVIKRAE 61

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           E  ++Y E+F   +  F+     + +K  DG+V DLGVSSMQ+D  DRGFSF   GPLDM
Sbjct: 62  EIQQNYGERFDFVETNFADSFAKLKEKKFDGIVLDLGVSSMQLDIADRGFSFLHDGPLDM 121

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RMS  G+SA + VN A  K+L  ++   G+E  + RIA  IV+ R++A   +T  L+ ++
Sbjct: 122 RMSGQGLSAEEFVNAAEEKELADVIYKYGDESFSRRIAKRIVEYRKTARIDSTTKLAEIV 181

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           + ++ F K  +I PAT++FQA+RI+VN+E+ EL Q L + +  LK  G L+VVSFHSLED
Sbjct: 182 RSSIGFRK-GKIDPATKTFQAIRIYVNDELGELEQFLVNVKNILKKDGRLVVVSFHSLED 240

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNA---HPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           R+VK FF   S K +        +         + IT K + P+ ++V  N R+RSAKLR
Sbjct: 241 RIVKNFFKENSEKPVVRSKYAKEDMTIDPNKWLKIITNKALAPSDKEVGLNIRARSAKLR 300

Query: 313 AGMRTVE 319
           A     E
Sbjct: 301 AAKAIYE 307


>gi|152996635|ref|YP_001341470.1| S-adenosyl-methyltransferase MraW [Marinomonas sp. MWYL1]
 gi|263456400|sp|A6VYK6|RSMH_MARMS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|150837559|gb|ABR71535.1| S-adenosyl-methyltransferase MraW [Marinomonas sp. MWYL1]
          Length = 312

 Score =  369 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 117/312 (37%), Positives = 181/312 (58%), Gaps = 9/312 (2%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFA 70
           +  T+ +H+ V+L + + +L      + +D TFG GG++R          ++  D+DP A
Sbjct: 1   MTKTMAEHISVMLNESVDMLVTDTNGLYVDGTFGRGGHTRLVLDRLDKGRLLGFDKDPVA 60

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFS 126
           +  G + +     +FS+ Q +F+ + +++ +      VDGV+ DLGVSS QID  +RGFS
Sbjct: 61  IGHG-KLLEQEDARFSIVQDSFANMAEHITNVFGVDRVDGVMMDLGVSSPQIDDAERGFS 119

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           F   GPLDMRM+   G SA++ +   + KD+  ++   GEE+ + RIA AI + R   P 
Sbjct: 120 FMNDGPLDMRMNPDKGQSAAEWIATVSEKDMADVMYQYGEERFSRRIAKAICEYRSHTPI 179

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            TT  LS +I +     +  + +PATR+FQ +RI++NNE+ +L  GL +A +ALK GG L
Sbjct: 180 LTTLQLSKIIAEANPAWEKGK-NPATRAFQGIRIYINNELGDLEIGLEAAAQALKVGGRL 238

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
            V+SFHSLEDR+VK+F   ++      RH+   NAH  +      K + P+Q +V+ N R
Sbjct: 239 AVISFHSLEDRIVKRFMKLQAKGPELPRHLPIRNAHLDIKFKTVGKAIKPSQSEVSENVR 298

Query: 306 SRSAKLRAGMRT 317
           SRSA LR   R 
Sbjct: 299 SRSAVLRVLERV 310


>gi|288818267|ref|YP_003432615.1| S-adenosyl-methyltransferase [Hydrogenobacter thermophilus TK-6]
 gi|288787667|dbj|BAI69414.1| S-adenosyl-methyltransferase [Hydrogenobacter thermophilus TK-6]
 gi|308751864|gb|ADO45347.1| S-adenosyl-methyltransferase MraW [Hydrogenobacter thermophilus
           TK-6]
          Length = 287

 Score =  369 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 130/305 (42%), Positives = 182/305 (59%), Gaps = 24/305 (7%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76
            H+PVLL++ + LL    G V +DAT G GG+++   +      VI +DRDP A+   +E
Sbjct: 1   MHIPVLLKESVDLLVWRTGGVYVDATVGLGGHTKGILERDPRAFVIGIDRDPHALKLAEE 60

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++D++ +F L+QA F  L + +  +G   VDG +FDLGVS +Q+    RGFSFQ+  PL
Sbjct: 61  NLKDFEGRFCLYQANFRYLDEVLKQEGIKEVDGFLFDLGVSMLQLKSP-RGFSFQRDEPL 119

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+     +A  V+N  + +DL RIL   GEE  ASRIA AIV  R   P +TT +L 
Sbjct: 120 DMRMNPEDKKTAYQVINTYSERDLVRILKEYGEEPNASRIARAIVMHRTKKPIETTGELV 179

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           S+I   + + +  R+HPATR FQA+RI VN E+  L + L    + LK GG L+V+SFHS
Sbjct: 180 SIITSLIPY-RRGRVHPATRIFQAIRIEVNEELISLEEALEKTPRFLKKGGRLVVISFHS 238

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK FF   +                 +F+ +TKK + PT +++  N  SRSAKLR
Sbjct: 239 LEDRIVKNFFKRHTD----------------IFKLLTKKPIRPTLQEMKKNPASRSAKLR 282

Query: 313 AGMRT 317
           AG R 
Sbjct: 283 AGERI 287


>gi|94501904|ref|ZP_01308414.1| S-adenosyl-methyltransferase [Oceanobacter sp. RED65]
 gi|94425957|gb|EAT10955.1| S-adenosyl-methyltransferase [Oceanobacter sp. RED65]
          Length = 308

 Score =  369 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 115/308 (37%), Positives = 175/308 (56%), Gaps = 10/308 (3%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H+ VLL + +  LN  P  + +D TFG GG+++           VI +D+DP A++ 
Sbjct: 1   MSKHITVLLHEAVEALNQDPDGLYVDCTFGRGGHTKLLLDQLSEQGRVIGIDKDPRAIAT 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQK 129
           GQE M    ++F +   +F+QL+++V   G    + GV+ DLGVSS Q+D  +RGFSF +
Sbjct: 61  GQELMAQ-DQRFQICHGSFAQLREFVEAHGQGKELSGVLMDLGVSSPQLDEAERGFSFMQ 119

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM+   GI+A + +  A+ +++  +    GEE+ + R+A AIV+RR   PF  T
Sbjct: 120 DGPLDMRMNTEAGITAQEWIATASEEEIANVFYEFGEERASRRLARAIVERRAIEPFTRT 179

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            DL+ +I+      + N+ HPATRSFQ LRIF+NNE+ +L   L    + L  GG L+V+
Sbjct: 180 LDLAEVIKHAHPRWEKNK-HPATRSFQGLRIFLNNELGDLESVLDETVEMLAKGGRLVVI 238

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDR+VK+F   +         +               K +  ++E+V  N RSRS
Sbjct: 239 SFHSLEDRIVKRFIRDKEKGPQLPPDLPIMEQDAPRPLKHIGKAIKASKEEVEQNVRSRS 298

Query: 309 AKLRAGMR 316
           A +R   +
Sbjct: 299 AIMRVAEK 306


>gi|304392263|ref|ZP_07374205.1| S-adenosyl-methyltransferase MraW [Ahrensia sp. R2A130]
 gi|303296492|gb|EFL90850.1| S-adenosyl-methyltransferase MraW [Ahrensia sp. R2A130]
          Length = 394

 Score =  369 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 159/338 (47%), Positives = 210/338 (62%), Gaps = 8/338 (2%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPF 69
           +  +      H+PV+LE+V+  L P  G  I+DATFGAGGYSR+    G+ VI +DRDP 
Sbjct: 54  APNMSTPDQPHIPVMLEEVLRALRPLDGSTIVDATFGAGGYSRAMLGGGATVIGIDRDPD 113

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFS 126
           AV+  Q  + ++    +L    FSQL       G   VDGVV D+GVSSMQID  +RGFS
Sbjct: 114 AVAAAQPMLAEFDGSLTLHHGRFSQLDKICRSAGHETVDGVVADIGVSSMQIDQAERGFS 173

Query: 127 FQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           F + GPLDMRM  SG SA+DVVN     DLTR++GILGEE+QASR++  IV+ R   PF+
Sbjct: 174 FLRDGPLDMRMEQSGPSAADVVNLLPRNDLTRVIGILGEERQASRVSAQIVEDRAKRPFE 233

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           TT  L+SL++K +     ++IHPATR+FQALRIFVN E+++LAQ L +AE+ L  GG L+
Sbjct: 234 TTLQLASLVEKVLSRKAKDKIHPATRTFQALRIFVNGELDQLAQALLAAERVLVPGGRLV 293

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           VV+FHSLEDRLVK F   R+ +    RHM   +     F  I +  +  +  +   N R+
Sbjct: 294 VVTFHSLEDRLVKIFLKDRAEQASGSRHMPVVDITTPTFNQIKRGAISASAAEAEINPRA 353

Query: 307 RSAKLRAGMRTVERSI-----EDDSFVHLPRLPTLSQF 339
           RSAKLR  +RT E        +D S   LPRLP  +  
Sbjct: 354 RSAKLRWAVRTEEPPRVNSNGDDLSIFGLPRLPDPASI 391


>gi|320450513|ref|YP_004202609.1| S-adenosyl-methyltransferase MraW [Thermus scotoductus SA-01]
 gi|320150682|gb|ADW22060.1| S-adenosyl-methyltransferase MraW [Thermus scotoductus SA-01]
          Length = 286

 Score =  369 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 132/305 (43%), Positives = 190/305 (62%), Gaps = 26/305 (8%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCG 74
           + I +H+PVL E+V+ LL   PG+V +DAT G  G+++   + G  VI LD+DP AV+  
Sbjct: 2   NAITEHIPVLYEEVLNLLQVRPGQVYVDATLGGAGHTKGILERGGLVIGLDQDPEAVARA 61

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +           +FQ  F  L++ + + GV    G++ DLGVSS  ++   RGFS+Q+ G
Sbjct: 62  RAL---GLPGLRVFQQNFRHLKEVLQEAGVSQVAGILADLGVSSFHLEDPKRGFSYQREG 118

Query: 132 PLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           PLDMRM   G +A +VVN   ++DL RIL  LGEEKQA RIA AIV+RR+ AP +TT +L
Sbjct: 119 PLDMRMGEEGPTAYEVVNTLPLEDLRRILRDLGEEKQAHRIAKAIVERRRKAPIRTTLEL 178

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++++ V F K    HPA ++FQA+R++VN+E+  L + LR AE+ L  GG L+V++FH
Sbjct: 179 AEVVRQAVGFRKAG--HPARKTFQAIRMYVNDELGALEEFLRQAEEVLAPGGRLLVITFH 236

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+VK+F    S                   + +TKK + P+ E+VA N RSRSAKL
Sbjct: 237 SLEDRVVKRFLKESS------------------LKVLTKKPITPSPEEVAKNPRSRSAKL 278

Query: 312 RAGMR 316
           RA  +
Sbjct: 279 RAAEK 283


>gi|218532980|ref|YP_002423796.1| S-adenosyl-methyltransferase MraW [Methylobacterium
           chloromethanicum CM4]
 gi|263456414|sp|B7KU77|RSMH_METC4 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|218525283|gb|ACK85868.1| S-adenosyl-methyltransferase MraW [Methylobacterium
           chloromethanicum CM4]
          Length = 353

 Score =  369 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 148/326 (45%), Positives = 199/326 (61%), Gaps = 8/326 (2%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQ 75
             HVPVLL +V+A L+     + +D TFGAGGY+R+  + G    VIA+DRDP A+  G 
Sbjct: 20  ARHVPVLLAEVLAALSLDRPGLAVDGTFGAGGYTRALLEAGPEVRVIAIDRDPTAIRGGA 79

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + +  +  +  L Q  F +L   + D+     D VV D+GVSSMQID   RGFSF++ GP
Sbjct: 80  DLVNAFGGRLRLVQGRFGELDTLIADQNEAQADWVVLDIGVSSMQIDEAQRGFSFRQDGP 139

Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           LDMRM   G SA+D+VN      L  IL   GEE+++  +A AIV+ R+ AP  TT  L+
Sbjct: 140 LDMRMGGEGPSAADLVNGEEETTLADILYHFGEERRSRAVARAIVEARRRAPIVTTAQLA 199

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            L+   V     + IHPATRSFQ LRI VN+E+ EL +GL +AE+ LK GG L VV+FHS
Sbjct: 200 DLVAGVVRPEPGSPIHPATRSFQGLRIAVNDELGELVRGLHAAERVLKPGGRLAVVTFHS 259

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRSAK 310
           LEDR+VK+FF++RSG+       +P    PA   F+ +TK  V+P++ +   N RSRSAK
Sbjct: 260 LEDRIVKQFFSARSGRAAQASRHVPGVERPAPKSFKLVTKGPVLPSEAETDVNPRSRSAK 319

Query: 311 LRAGMRTVERSIEDDSFVH-LPRLPT 335
           LRAG RT   +    S +  L  LP 
Sbjct: 320 LRAGERTDAPAPPPLSAIETLASLPA 345


>gi|313680156|ref|YP_004057895.1| S-adenosyl-methyltransferase mraw [Oceanithermus profundus DSM
           14977]
 gi|313152871|gb|ADR36722.1| S-adenosyl-methyltransferase MraW [Oceanithermus profundus DSM
           14977]
          Length = 286

 Score =  369 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 125/304 (41%), Positives = 178/304 (58%), Gaps = 25/304 (8%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQ 75
           T   H PVLL + + LLN  P  V +DATFG GG++R   + G  V+A+D+DP A     
Sbjct: 4   TETTHEPVLLHESLDLLNVQPEGVYVDATFGGGGHTRGIVERGGQVVAIDQDPDAHERA- 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E +     +F   ++ F  L+  +   GV    G++ DLGVSS   D  +RGFS+Q+ GP
Sbjct: 63  ERLGGVAIRF--VRSNFRDLEAVLDALGVPSVQGILADLGVSSYHFDDPERGFSYQREGP 120

Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           LDMRM   G +A++VVN    ++L  ++   GEE+Q+ RIA AIV+ R+ AP  TT  L+
Sbjct: 121 LDMRMGHEGPTAAEVVNTLGEEELAELIWRYGEERQSRRIARAIVEARKEAPIATTTQLA 180

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            ++++ V F K    HPA ++FQALRI+VN+E+  L   L +A + L  GG L+V+SFHS
Sbjct: 181 EIVRRAVGFRKAG--HPARKTFQALRIYVNDELGALEALLEAAGRVLAPGGRLVVISFHS 238

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           +EDR+VK F                       F+ +TKK ++P  E+ A N R+RSAKLR
Sbjct: 239 MEDRIVKHFLKGD-----------------PRFRVLTKKPLMPGPEEAARNPRARSAKLR 281

Query: 313 AGMR 316
           AG R
Sbjct: 282 AGER 285


>gi|165933443|ref|YP_001650232.1| 16S rRNA m(4)C1402 methyltranserfase [Rickettsia rickettsii str.
           Iowa]
 gi|189082216|sp|B0BYA0|RSMH_RICRO RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262831529|sp|A8GSS6|RSMH_RICRS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|165908530|gb|ABY72826.1| S-adenosyl-methyltransferase [Rickettsia rickettsii str. Iowa]
          Length = 307

 Score =  369 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 129/307 (42%), Positives = 185/307 (60%), Gaps = 5/307 (1%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQ 75
           I  HV V+L +++  L+P  G+  LD TFGAGGYS++  +     V ALDRDP  +   +
Sbjct: 2   IQSHVSVMLNEMLEALSPKAGESYLDCTFGAGGYSKAILESCNCYVTALDRDPNVIKRAE 61

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           E  ++Y E+F   +  F+     + +K  DG+V DLGVSSMQ+D  DRGFSF   GPLDM
Sbjct: 62  EIQQNYGERFDFVETNFADSFAKLKEKKFDGIVLDLGVSSMQLDIADRGFSFLHDGPLDM 121

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RMS  G+SA + VN A  K+L  ++   G+E  + RIA  IV+ R++A   +T  L+ ++
Sbjct: 122 RMSGQGLSAEEFVNAAEEKELADVIYKYGDESFSRRIAKRIVEYRKTARIDSTGKLAEIV 181

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           + ++ F K  +I PAT++FQA+RI+VN+E+ EL Q L + +  LK  G L+VVSFHSLED
Sbjct: 182 RSSIGFRK-GKIDPATKTFQAIRIYVNDELGELEQFLVNVKNILKKDGRLVVVSFHSLED 240

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNA---HPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           R+VK FF   S K +        +         + IT K + P+ ++V  N R+RSAKLR
Sbjct: 241 RIVKNFFKENSEKPVVRSKYAKDDMTIDPNKWLKIITNKALAPSDKEVGLNIRARSAKLR 300

Query: 313 AGMRTVE 319
           A     E
Sbjct: 301 AAKAIYE 307


>gi|319404518|emb|CBI78123.1| S-adenosyl-methyltransferase [Bartonella rochalimae ATCC BAA-1498]
          Length = 349

 Score =  369 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 162/325 (49%), Positives = 209/325 (64%), Gaps = 3/325 (0%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQE 76
           +  H+PVLL+ V+A L P  G  ++D TFGAGGYS +    G+ VIALDRDP A+  GQ 
Sbjct: 25  VERHIPVLLQSVLAELAPLAGSKVIDGTFGAGGYSCALLNAGAEVIALDRDPHAIREGQA 84

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
            +  +  +  L QA FSQL   V +  VD V+ D+GVSSMQ+D  +RGFSFQK GPLDMR
Sbjct: 85  LVDQFFPRLRLVQAEFSQLDHIVEE-KVDAVILDIGVSSMQLDEPERGFSFQKDGPLDMR 143

Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
           M   G +A+DVVN     DL ++    GEE+ A RIA  I KRR   PF  T DL+  ++
Sbjct: 144 MGQIGFTAADVVNYLKADDLAQLFKTFGEERYAVRIARMIEKRRCIRPFLRTIDLAHAVE 203

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
             +     + IHPATR FQALRI+VNNE+ ELA GL +AE+ LKAGG L VVSFHSLEDR
Sbjct: 204 SLIGRKPGDHIHPATRVFQALRIYVNNELAELACGLFAAERVLKAGGRLAVVSFHSLEDR 263

Query: 257 LVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           +VKKFF++RSG     R++    + PA F  + K V  PTQE++  N R+RSA+LR G+R
Sbjct: 264 MVKKFFSARSGHKKGSRYLPEIKSAPATFIPLFKGVKTPTQEELQQNPRARSARLRMGVR 323

Query: 317 TVERSIEDDSFVHLPRLPTLSQFRG 341
           T E +I  D  + L  L  + +F G
Sbjct: 324 TQEVAIAAD--MKLFGLAEIVRFEG 346


>gi|219870383|ref|YP_002474758.1| S-adenosyl-methyltransferase MraW [Haemophilus parasuis SH0165]
 gi|263456048|sp|B8F3A8|RSMH_HAEPS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|219690587|gb|ACL31810.1| S-adenosyl-methyltransferase MraW involved in cell envelope
           biogenesis [Haemophilus parasuis SH0165]
          Length = 312

 Score =  369 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 114/310 (36%), Positives = 172/310 (55%), Gaps = 16/310 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H+ VLL + +  L   P  + +D TFG GG+SR           +IA+DRDP A++   
Sbjct: 6   KHITVLLHEAVDGLAIKPNGIYVDGTFGRGGHSRLILSKLGEQGRLIAIDRDPRAIAEAN 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +F +  + FS + D   +      +DG++ DLGVSS Q+D  +RGFSF + G
Sbjct: 66  TI---TDPRFQIVHSAFSSIPDICDELNLVGKIDGILLDLGVSSPQLDEAERGFSFMRDG 122

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ--SAPFQTT 188
           PLDMRM  + G+SA + + Q +V DL  +L   GEE+ A RIA A+V   +  +     T
Sbjct: 123 PLDMRMDTTKGLSAMEWLAQVSVDDLAWVLKEFGEERFAKRIAQAVVSYNKSATEKISRT 182

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ +I   V F K+   HPATRSFQA+RI++N+E++EL + L SA   L   G L ++
Sbjct: 183 LQLAQIIADVVPF-KDKHKHPATRSFQAIRIYINSELDELEKALNSALTVLAPEGRLSII 241

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           SFHSLEDR+VK+F   +S      +   ++ S  +  +      K ++P++ ++  N RS
Sbjct: 242 SFHSLEDRMVKQFMRKQSKGETVPKGLPILESELNKNIPLKTVGKAIMPSEAEIEANPRS 301

Query: 307 RSAKLRAGMR 316
           RSA LR   +
Sbjct: 302 RSAVLRVAEK 311


>gi|78356081|ref|YP_387530.1| S-adenosyl-methyltransferase MraW [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|88909199|sp|Q313R1|RSMH_DESDG RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|78218486|gb|ABB37835.1| methyltransferase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
          Length = 325

 Score =  369 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 119/325 (36%), Positives = 170/325 (52%), Gaps = 11/325 (3%)

Query: 4   KSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSN 60
            +         H    HVPVLL++V+  L+P  G   LD T G GG+S +        + 
Sbjct: 1   MTADNGHDNNRHQYTAHVPVLLDEVLHYLSPVRGGRYLDGTLGLGGHSEAIMNRCGGDAW 60

Query: 61  VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQ 117
           ++ LDRD  A++     +  + ++ +   A +SQ    + + G   +DG + D+GVSSMQ
Sbjct: 61  LLGLDRDREALAAASGRLAPFGDRVTTRYACYSQFAAIMDEIGWTGLDGALIDIGVSSMQ 120

Query: 118 IDCGDRGFSFQKSGPLDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175
           ID   RGFSF   GPLDMRM  SG   SA  +VN  +V+ L  I+   GE+  A RIA A
Sbjct: 121 IDTPSRGFSFYADGPLDMRMDPSGDMPSAGVLVNTGSVERLKEIISTYGEDPMAGRIARA 180

Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLR 233
           IV  R   P +TT  L+ +++         +   HPATR+FQALR+ VN E+EEL   L 
Sbjct: 181 IVDARARNPIETTARLAEVVESAYPAKWRAKSRNHPATRTFQALRMAVNGELEELETFLA 240

Query: 234 SAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKV 292
           +    +  GG ++V++FHSLEDRLVK  F   +   +  RH  +           +T+K 
Sbjct: 241 AIVDRMNPGGRIVVITFHSLEDRLVKNAFRDEAKGCLCPRHIPVCVCGKKPRVNVLTRKP 300

Query: 293 VVPTQEDVAFNRRSRSAKLRAGMRT 317
           V   Q ++  N R+ SAKLRA  R 
Sbjct: 301 VTAGQAELQANSRASSAKLRAAERI 325


>gi|225867991|ref|YP_002743939.1| S-adenosyl-methyltransferase MraW [Streptococcus equi subsp.
           zooepidemicus]
 gi|262827289|sp|C0MGV8|RSMH_STRS7 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|225701267|emb|CAW98245.1| S-adenosyl-methyltransferase MraW [Streptococcus equi subsp.
           zooepidemicus]
          Length = 316

 Score =  369 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 104/320 (32%), Positives = 171/320 (53%), Gaps = 15/320 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           M++  H     HV VLL + + +L+  P  + +DAT G  G+S     +     ++   D
Sbjct: 1   MTNEFH-----HVTVLLHEAVDMLDIKPDGIYVDATLGGSGHSAYLLSLLGDKGHLYCFD 55

Query: 66  RDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120
           +D  A+   QE ++ Y  K Q +  +  F  L+  + + GV   DG+++DLGVSS Q+D 
Sbjct: 56  QDQKAIDHAQEQLKPYIDKGQVTFIKDNFRHLKVRLLEHGVTEIDGILYDLGVSSPQLDE 115

Query: 121 GDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS+++  PLDMRM   + ++A +VVN  +  DL RI    GE+K + +IA  I + 
Sbjct: 116 RERGFSYKQDAPLDMRMDSQAALTAYEVVNTYDFNDLVRIFFKYGEDKFSKQIARKIEQA 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R   P  TT +L++LI+      +   + HPA + FQA+RI VN+E+      ++ A + 
Sbjct: 176 RAIKPISTTTELAALIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADASIQQAIEL 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L   G + V++FHSLEDRL K  F   S            +      + +++K ++P+Q+
Sbjct: 236 LALDGRISVITFHSLEDRLTKHLFKEASTADAPKGLPFIPDELKPKLELVSRKPILPSQK 295

Query: 299 DVAFNRRSRSAKLRAGMRTV 318
           ++  N R+ SAKLR   +  
Sbjct: 296 ELMANNRAHSAKLRVARKVR 315


>gi|157964706|ref|YP_001499530.1| S-adenosyl-methyltransferase MraW [Rickettsia massiliae MTU5]
 gi|167011838|sp|A8F247|RSMH_RICM5 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|157844482|gb|ABV84983.1| S-adenosyl-methyltransferase MraW [Rickettsia massiliae MTU5]
          Length = 307

 Score =  369 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 129/307 (42%), Positives = 185/307 (60%), Gaps = 5/307 (1%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQ 75
           I  HVPV+L +++  L+P  G+  LD TFGAGGYS++  +     V ALDRDP  +   +
Sbjct: 2   IQSHVPVMLNEMLEALSPKDGESYLDCTFGAGGYSKAILESCNCYVTALDRDPNVIKRAE 61

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           E  ++Y E+F   +  F+     + +K  DG+V DLGVSSMQ+D  DRGFSF   GPLDM
Sbjct: 62  EIQQNYGERFDFVETNFADSFAKLKEKKFDGIVLDLGVSSMQLDIADRGFSFLHDGPLDM 121

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RMS  G+SA + VN A  K+L  ++   G+E  + RIA  IV+ R++A   +T  L+ ++
Sbjct: 122 RMSGQGLSAEEFVNTAEEKELADVIYKYGDESFSRRIAKRIVEYRKTARIDSTGKLAEIV 181

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           + ++ F K  +I PAT++FQA+RI+VN+E+ EL Q L + +  LK  G L+VVSFHSLED
Sbjct: 182 RSSIGFRK-GKIDPATKTFQAIRIYVNDELGELEQFLVNVKNILKKDGRLVVVSFHSLED 240

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNA---HPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           R+VK FF   S K +        +         + IT K +  + ++V  N R+RSAKLR
Sbjct: 241 RIVKNFFKENSEKPVVRSKYAKDDMTIDPNKWLKIITNKALASSDKEVGLNIRARSAKLR 300

Query: 313 AGMRTVE 319
           A     E
Sbjct: 301 AAKAIYE 307


>gi|167854991|ref|ZP_02477765.1| S-adenosyl-methyltransferase MraW [Haemophilus parasuis 29755]
 gi|167853839|gb|EDS25079.1| S-adenosyl-methyltransferase MraW [Haemophilus parasuis 29755]
          Length = 312

 Score =  369 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 114/310 (36%), Positives = 171/310 (55%), Gaps = 16/310 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H+ VLL + +  L   P  + +D TFG GG+SR           +IA+DRDP A++   
Sbjct: 6   KHITVLLHEAVDGLAIKPNGIYVDGTFGRGGHSRLILSKLGEQGRLIAIDRDPRAIAEAN 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +F +  + FS + D   +      +DG++ DLGVSS Q+D  +RGFSF + G
Sbjct: 66  TI---TDPRFQIVHSAFSSIPDICDELNLVGKIDGILLDLGVSSPQLDEAERGFSFMRDG 122

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ--SAPFQTT 188
           PLDMRM  + G+SA + + Q +V DL  +L   GEE+ A RIA A+V   +  +     T
Sbjct: 123 PLDMRMDTTKGLSAMEWLAQVSVDDLAWVLKEFGEERFAKRIAQAVVSYNKSATEKISRT 182

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L  +I   V F K+   HPATRSFQA+RI++N+E++EL + L SA   L   G L ++
Sbjct: 183 LQLVQIIADVVPF-KDKHKHPATRSFQAIRIYINSELDELEKALNSALTVLAPEGRLSII 241

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           SFHSLEDR+VK+F   +S      +   ++ S  +  +      K ++P++ ++  N RS
Sbjct: 242 SFHSLEDRMVKQFMRKQSKGETVPKGLPILESELNKNIPLKTVGKAIMPSEAEIEANPRS 301

Query: 307 RSAKLRAGMR 316
           RSA LR   +
Sbjct: 302 RSAVLRVAEK 311


>gi|317132992|ref|YP_004092306.1| S-adenosyl-methyltransferase MraW [Ethanoligenens harbinense
           YUAN-3]
 gi|315470971|gb|ADU27575.1| S-adenosyl-methyltransferase MraW [Ethanoligenens harbinense
           YUAN-3]
          Length = 312

 Score =  369 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 117/303 (38%), Positives = 172/303 (56%), Gaps = 6/303 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77
           H  VLL + I  L   P  V +D T G GG+S +         +IALD DP AV    E 
Sbjct: 6   HQSVLLHESIEALAIRPDGVYVDGTAGGGGHSAAIAAGLESGRLIALDADPDAVRAAGER 65

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +  +  +  + Q+ F  ++  + D G   VDG++ DLGVSS Q D   RGFS++   PLD
Sbjct: 66  LAPFGSKACVVQSNFRDMKRVLADLGIAEVDGILLDLGVSSHQFDTPARGFSYRADAPLD 125

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRMS SG+ A +++  A+  +L RIL   GEE+ A RIA AI KRR++ P +TT +LS L
Sbjct: 126 MRMSQSGLGARELLATASYAELVRILREYGEERFAPRIAAAICKRRETKPLETTFELSEL 185

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           +++          HPA ++FQALR+ VN E+E L+  L  A   L+ GG L +++FHSLE
Sbjct: 186 VREAYPAPARRSGHPARKTFQALRMAVNGELESLSVLLDDALALLRPGGRLCIITFHSLE 245

Query: 255 DRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           DR+VK+ F S +   +      +         + + K+ V+P+ E++  N+RSRSA+LR 
Sbjct: 246 DRMVKQRFLSWAQGCICPPDFPVCVCGRKPQVRVVYKRGVLPSAEEIEANQRSRSARLRV 305

Query: 314 GMR 316
             +
Sbjct: 306 AEK 308


>gi|320179644|gb|EFW54593.1| rRNA small subunit methyltransferase H [Shigella boydii ATCC 9905]
          Length = 313

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 119/312 (38%), Positives = 180/312 (57%), Gaps = 19/312 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H  VLL++ +  LN  PG + +D TFG GG+SR           ++A+DRDP A++  +
Sbjct: 6   KHTTVLLDEAVNGLNIRPGGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +FS+    FS L +YV ++     +DG++ DLGVSS Q+D  +RGFSF + G
Sbjct: 66  TI---DDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDG 122

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   T++
Sbjct: 123 PLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKE 182

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L ++SF
Sbjct: 183 LAEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISF 241

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305
           HSLEDR+VK+F    S        +  +            +++ K  ++P +E+VA N R
Sbjct: 242 HSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGK--LMPGEEEVAENPR 299

Query: 306 SRSAKLRAGMRT 317
           +RS+ LR   RT
Sbjct: 300 ARSSVLRIAERT 311


>gi|237807292|ref|YP_002891732.1| S-adenosyl-methyltransferase MraW [Tolumonas auensis DSM 9187]
 gi|262825943|sp|C4LA17|RSMH_TOLAT RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|237499553|gb|ACQ92146.1| S-adenosyl-methyltransferase MraW [Tolumonas auensis DSM 9187]
          Length = 308

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 120/308 (38%), Positives = 180/308 (58%), Gaps = 14/308 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
           +H+ VLL++ +  L   P  + +D TFG GG+SR   +       + A+DRDP AV+  +
Sbjct: 2   EHITVLLQEAVDGLAIRPDGIYVDGTFGRGGHSRLILQQLGPQGRLYAIDRDPQAVAVAK 61

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           E       +F +    FS L +Y+ ++G    VDG++ DLGVSS Q+D  +RGFSF   G
Sbjct: 62  EW---QDPRFEIISGPFSSLHEYMAERGLLGKVDGLLLDLGVSSPQLDEAERGFSFMNDG 118

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM    G SA++ +  A+V D+  +L   GEE+ A+RIA AIV  R + P+  T+ 
Sbjct: 119 PLDMRMDPLHGESAAEWLLHADVDDIAWVLRTYGEERFANRIARAIVADRVTTPYTRTRQ 178

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ +I + V   + ++ HPATRSFQALRI VN E++E+ + L+++   L  GG L V+SF
Sbjct: 179 LAEMIARVVPNKEKHK-HPATRSFQALRIHVNQELKEIEETLKASLSVLAPGGRLAVISF 237

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT--KKVVVPTQEDVAFNRRSRS 308
           HSLEDR+VK+F   +   +   R +  +       Q++    K + P   +V+ N RSRS
Sbjct: 238 HSLEDRIVKQFIRQQEKGIQPPRGLPITEDQIRKTQTLHSVGKAIKPADSEVSDNVRSRS 297

Query: 309 AKLRAGMR 316
           + LR   R
Sbjct: 298 SVLRVAER 305


>gi|206580699|ref|YP_002240446.1| S-adenosyl-methyltransferase MraW [Klebsiella pneumoniae 342]
 gi|288937146|ref|YP_003441205.1| S-adenosyl-methyltransferase MraW [Klebsiella variicola At-22]
 gi|290512569|ref|ZP_06551935.1| S-adenosyl-methyltransferase MraW [Klebsiella sp. 1_1_55]
 gi|263456192|sp|B5Y1V5|RSMH_KLEP3 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|206569757|gb|ACI11533.1| S-adenosyl-methyltransferase MraW [Klebsiella pneumoniae 342]
 gi|288891855|gb|ADC60173.1| S-adenosyl-methyltransferase MraW [Klebsiella variicola At-22]
 gi|289774910|gb|EFD82912.1| S-adenosyl-methyltransferase MraW [Klebsiella sp. 1_1_55]
          Length = 313

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 120/312 (38%), Positives = 182/312 (58%), Gaps = 19/312 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++  +
Sbjct: 6   KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSRLGAEGRLLAIDRDPQAIAVAK 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +FS+    FSQL DYV ++     +DG++ DLGVSS Q+D  +RGFSF + G
Sbjct: 66  TI---DDPRFSIVHGPFSQLADYVDERNLTGKIDGILLDLGVSSPQLDDAERGFSFMRDG 122

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + G SA++ +  A   D+  ++   GEE+   RIA AIV+R +  P   T++
Sbjct: 123 PLDMRMDPTRGQSAAEWLQTAEEADIAWVIKTFGEERFGKRIARAIVERNRIEPMTRTKE 182

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ +I   +   K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L ++SF
Sbjct: 183 LAEVIAAAMPV-KDKHKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSIISF 241

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305
           HSLEDR+VK+F   +S        +  + A          +++ K  ++P +E+VA N R
Sbjct: 242 HSLEDRIVKRFMREQSRGPQVPAGIPMTEAQLKKLGGRELRALGK--LMPGEEEVAENPR 299

Query: 306 SRSAKLRAGMRT 317
           +RS+ LR   RT
Sbjct: 300 ARSSVLRIAERT 311


>gi|319406014|emb|CBI79645.1| S-adenosyl-methyltransferase [Bartonella sp. AR 15-3]
          Length = 332

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 164/322 (50%), Positives = 209/322 (64%), Gaps = 3/322 (0%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+PVLL+ V+A L P  G  ++D TFGAGGYSR+    G+ VIALDRDP AV  GQ  + 
Sbjct: 11  HIPVLLQSVLAGLAPLAGAKVIDGTFGAGGYSRALLNAGAEVIALDRDPQAVREGQALVD 70

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
            +  +  L QA FSQL   V +  VD V+ D+GVSSMQ+D  +RGFSFQK GPLDMRM+ 
Sbjct: 71  QFFPRLRLVQAEFSQLDHIV-EGLVDAVILDIGVSSMQLDEAERGFSFQKDGPLDMRMAQ 129

Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199
           +G +A+DVVN   V DL ++   LGEE+ A RIA  I KRR   PF  T DL+  I+  +
Sbjct: 130 TGFTAADVVNYLKVDDLAQLFKTLGEERYAVRIARMIEKRRCIRPFLRTIDLAHAIEALI 189

Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259
                N IHPATR FQALRI+VNNE+ ELA  L + E+ LKAGG L VVSFHSLEDR+VK
Sbjct: 190 GRKPGNHIHPATRVFQALRIYVNNELNELACALFAVERVLKAGGRLAVVSFHSLEDRMVK 249

Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319
           KF ++RSG     R++    + PA F  + K V   TQE++  N R+RSA+LR G+RT E
Sbjct: 250 KFLSARSGHKKGSRYLPEIKSVPATFIPLYKGVKTATQEELQKNPRARSARLRIGVRTQE 309

Query: 320 RSIEDDSFVHLPRLPTLSQFRG 341
            +I  D  + L  L  ++ F G
Sbjct: 310 AAIAAD--MKLFGLAEIAHFEG 329


>gi|315038044|ref|YP_004031612.1| S-adenosyl-methyltransferase MraW [Lactobacillus amylovorus GRL
           1112]
 gi|312276177|gb|ADQ58817.1| S-adenosyl-methyltransferase MraW [Lactobacillus amylovorus GRL
           1112]
 gi|327183324|gb|AEA31771.1| 16S rRNA m(4)C1402 methyltranserfase [Lactobacillus amylovorus GRL
           1118]
          Length = 315

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 106/311 (34%), Positives = 164/311 (52%), Gaps = 13/311 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76
            H  VLL + I  L P  G + +DATFG GG++R          +I  D+D +A+   + 
Sbjct: 4   KHTSVLLHETIDNLKPKNGGLYVDATFGGGGHARYLLSKIDTGTLIGFDQDEYAIKSAKL 63

Query: 77  TMRDY-----KEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSF 127
              D      + +  L    F+ LQ  + +     G+DG+ +DLGVSS Q D  DRGFS+
Sbjct: 64  NFADLLEPDSEPKLKLVHDNFTNLQRDLVELGYSDGIDGIYYDLGVSSPQFDQADRGFSY 123

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           + +  LDMRM  S  + A  +VN  + K+L  IL   G+EK + +IA  IV+RR+  P  
Sbjct: 124 RYNARLDMRMDQSQSLDAYQLVNTLSQKELADILYKYGDEKFSRQIARKIVERRKDKPIV 183

Query: 187 TTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           TT +L  +I++ +   ++    HPA +SFQALR+ VN+E++ L   L  A K L+ GG +
Sbjct: 184 TTFELVDIIKEAIPAYARRTGGHPAKKSFQALRVAVNHELDVLQASLEEAIKVLRPGGRI 243

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
            V++F S ED++VKK F   S   +        +      + + +K +  +  ++  N R
Sbjct: 244 SVITFQSHEDKIVKKIFKKYSEVEVPRGMPFVPDDMKPTLRLVNRKPITASTSELEKNNR 303

Query: 306 SRSAKLRAGMR 316
           S SAKLR   +
Sbjct: 304 SHSAKLRVAEK 314


>gi|237729380|ref|ZP_04559861.1| S-adenosyl-methyltransferase MraW [Citrobacter sp. 30_2]
 gi|226909109|gb|EEH95027.1| S-adenosyl-methyltransferase MraW [Citrobacter sp. 30_2]
          Length = 313

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 120/312 (38%), Positives = 183/312 (58%), Gaps = 19/312 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++  +
Sbjct: 6   KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +FS+    FS L DYV ++G    +DG++ DLGVSS Q+D  +RGFSF + G
Sbjct: 66  TI---TDPRFSIVHGPFSALADYVAERGLTGKIDGILLDLGVSSPQLDDAERGFSFMRDG 122

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + G SA++ +  A+  D+  ++   GEE+   RIA AIV+R +  P   T++
Sbjct: 123 PLDMRMDPTRGQSAAEWLQTADEADIAWVIKTFGEERFGKRIARAIVERNRIEPMTRTKE 182

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ +I   +   K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L ++SF
Sbjct: 183 LAEVIAAAMPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSIISF 241

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305
           HSLEDR+VK+F   +S        +  + A          +++ K  ++P +E+VA N R
Sbjct: 242 HSLEDRIVKRFMREQSRGPQVPAGIPMTEAQIKKLGGRELRALGK--MMPGEEEVAENPR 299

Query: 306 SRSAKLRAGMRT 317
           +RS+ LR   RT
Sbjct: 300 ARSSVLRIAERT 311


>gi|325956496|ref|YP_004291908.1| 16S rRNA m(4)C1402 methyltranserfase [Lactobacillus acidophilus
           30SC]
 gi|325333061|gb|ADZ06969.1| 16S rRNA m(4)C1402 methyltranserfase [Lactobacillus acidophilus
           30SC]
          Length = 315

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 107/311 (34%), Positives = 165/311 (53%), Gaps = 13/311 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76
            H  VLL + I  L P  G + +DATFG GG++R          +I  D+D +A+   + 
Sbjct: 4   KHTSVLLHETIDNLKPKNGGLYVDATFGGGGHARYLLSKIDTGTLIGFDQDEYAIKSAKL 63

Query: 77  TMRDY-----KEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSF 127
              D      + +  L    F+ LQ  + +     G+DG+ +DLGVSS Q D  DRGFS+
Sbjct: 64  NFADLLEPDSEPKLKLVHDNFTNLQRDLVELGYSDGIDGIYYDLGVSSPQFDQADRGFSY 123

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           + +  LDMRM  S  + A  +VN  + K+L  IL   G+EK + +IAH IV+RR+  P  
Sbjct: 124 RYNARLDMRMDQSQSLDAYQLVNTLSQKELADILYKYGDEKFSRQIAHKIVERRKDKPIV 183

Query: 187 TTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           TT +L  +I++ +   ++    HPA +SFQALR+ VN+E++ L   L  A K L+ GG +
Sbjct: 184 TTFELVDIIKEAIPAYARRTGGHPAKKSFQALRVAVNHELDVLQASLEEAIKVLRPGGRI 243

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
            V++F S ED++VKK F   S   +        +      + + +K +  +  ++  N R
Sbjct: 244 SVITFQSHEDKIVKKIFKKYSEVEVPRGMPFVPDDMKPTLRLVNRKPITASTSELEKNNR 303

Query: 306 SRSAKLRAGMR 316
           S SAKLR   +
Sbjct: 304 SHSAKLRVAEK 314


>gi|326797507|ref|YP_004315326.1| ribosomal RNA small subunit methyltransferase H [Sphingobacterium
           sp. 21]
 gi|326548271|gb|ADZ76656.1| Ribosomal RNA small subunit methyltransferase H [Sphingobacterium
           sp. 21]
          Length = 303

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 116/306 (37%), Positives = 169/306 (55%), Gaps = 16/306 (5%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCG 74
           G H+PV+L++ I  L   P  V +D TFG GG+S +          +IA D+DP A++  
Sbjct: 4   GYHLPVMLQECIEALAIKPNGVYVDVTFGGGGHSSAIIQHLGEEGRLIAFDQDPDALNNA 63

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   E+F+L    F  L++ +  +G   VDG++ DLGVSS Q D  +RGFS +   
Sbjct: 64  L-----PDERFTLIHQNFRYLKNNLRLQGLKQVDGILADLGVSSHQFDEAERGFSIRFDA 118

Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM   G + A  ++N  + +DL RI G+ GE + A  +A  IV  R S P  T  D
Sbjct: 119 DLDMRMDRVGELDAKGILNSYSEEDLHRIFGMYGEVQNAKSLAKVIVTSRLSRPINTVSD 178

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L S++ K V   K N+     + FQALRI VN E+E L + L  A+  LK GG L+V+S+
Sbjct: 179 LKSIVSKLVPRGKENK--YYAQLFQALRIEVNKELEALQEFLVQAQAVLKPGGRLVVMSY 236

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDRLVK F A    K    +    +   P  F  +++K ++ +++++  N R+RSAK
Sbjct: 237 HSLEDRLVKNFMAKGKFKGEVEKDFYGNEIKP--FMLVSRKAIIASEDEIRQNNRARSAK 294

Query: 311 LRAGMR 316
           LR   +
Sbjct: 295 LRVAEK 300


>gi|283835144|ref|ZP_06354885.1| S-adenosyl-methyltransferase MraW [Citrobacter youngae ATCC 29220]
 gi|291069444|gb|EFE07553.1| S-adenosyl-methyltransferase MraW [Citrobacter youngae ATCC 29220]
          Length = 313

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 120/312 (38%), Positives = 183/312 (58%), Gaps = 19/312 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++  +
Sbjct: 6   KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +FS+    FS L DYV ++G    +DG++ DLGVSS Q+D  +RGFSF + G
Sbjct: 66  TI---TDPRFSIVHGPFSALADYVAERGLTGKIDGILLDLGVSSPQLDDAERGFSFMRDG 122

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + G SA++ +  A+  D+  ++   GEE+   RIA AIV+R +  P   T++
Sbjct: 123 PLDMRMDPTRGQSAAEWLQTADEADIAWVIKTFGEERFGKRIARAIVERNRIEPMTRTKE 182

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ +I   +   K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L ++SF
Sbjct: 183 LAEVIAAAMPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSIISF 241

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305
           HSLEDR+VK+F   +S        +  + A          +++ K  ++P +E+VA N R
Sbjct: 242 HSLEDRIVKRFMREQSRGPQVPAGIPMTEAQIKKLGGRELRALGK--MMPGEEEVAENPR 299

Query: 306 SRSAKLRAGMRT 317
           +RS+ LR   RT
Sbjct: 300 ARSSVLRIAERT 311


>gi|170768458|ref|ZP_02902911.1| S-adenosyl-methyltransferase MraW [Escherichia albertii TW07627]
 gi|170122562|gb|EDS91493.1| S-adenosyl-methyltransferase MraW [Escherichia albertii TW07627]
          Length = 313

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 119/312 (38%), Positives = 179/312 (57%), Gaps = 19/312 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++  +
Sbjct: 6   KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLSEEGRLLAIDRDPQAIAVAK 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +FS+    FS L +YV ++     +DG++ DLGVSS Q+D  +RGFSF + G
Sbjct: 66  TI---DDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDG 122

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   T++
Sbjct: 123 PLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKE 182

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L V+SF
Sbjct: 183 LAEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSVISF 241

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305
           HSLEDR+VK+F    S        +  +            +++ K  ++P +E+VA N R
Sbjct: 242 HSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGK--LMPGEEEVAENPR 299

Query: 306 SRSAKLRAGMRT 317
           +RS+ LR   RT
Sbjct: 300 ARSSVLRIAERT 311


>gi|209746624|gb|ACI71619.1| putative apolipoprotein [Escherichia coli]
 gi|320647484|gb|EFX16279.1| 16S rRNA m(4)C1402 methyltranserfase [Escherichia coli O157:H- str.
           493-89]
 gi|320652818|gb|EFX21056.1| 16S rRNA m(4)C1402 methyltranserfase [Escherichia coli O157:H- str.
           H 2687]
          Length = 313

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 118/312 (37%), Positives = 179/312 (57%), Gaps = 19/312 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++  +
Sbjct: 6   KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +FS+    FS L +YV ++     +DG++ DLGVSS Q+D  +RGFSF + G
Sbjct: 66  TI---DDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDG 122

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   T++
Sbjct: 123 PLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNRKQPMTRTKE 182

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L ++SF
Sbjct: 183 LAEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISF 241

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305
           HSLEDR+VK+F    S        +  +            +++ K  ++P +E+VA N R
Sbjct: 242 HSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGK--LMPGEEEVAENPR 299

Query: 306 SRSAKLRAGMRT 317
           +RS+ LR   RT
Sbjct: 300 ARSSVLRIAERT 311


>gi|239996439|ref|ZP_04716963.1| S-adenosyl-methyltransferase MraW [Alteromonas macleodii ATCC
           27126]
          Length = 313

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 125/314 (39%), Positives = 181/314 (57%), Gaps = 15/314 (4%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFA 70
             +   H+ VLL++ I  L   P  + +DATFG GG+S            +IA DRDP A
Sbjct: 3   QPSEFKHISVLLDECIEALAIKPNGIYIDATFGRGGHSAHILDALGEHGRLIAFDRDPQA 62

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFS 126
           +    E   D  ++FS+  + F  + + +   G    +DGV+ DLGVSS Q+D  +RGFS
Sbjct: 63  IKAA-ERFAD-DKRFSIIHSPFGDMAEEIEALGLTGKIDGVLMDLGVSSPQLDDAERGFS 120

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           F + GPLDMRM  S G SA+D +  A  +D+T+++   GEEK   RIAHAIV  R+  P 
Sbjct: 121 FLRDGPLDMRMDTSRGQSAADWLANAEEQDITQVIKEFGEEKFGKRIAHAIVNTRKETPI 180

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
             T  L+ +I + V   K+   HPATR+FQ +RI++N E+E+L  GL++A + L   G L
Sbjct: 181 TRTAQLAKIIDEAVPV-KDKFKHPATRAFQGIRIYINAELEQLRVGLKAATQVLAKEGRL 239

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK---KVVVPTQEDVAF 302
            V+SFHSLEDRLVK+F   +S K  +V H +P          + K   K + P+++++A 
Sbjct: 240 AVISFHSLEDRLVKRFIKDQS-KGKSVPHNLPITQAEIDADKVLKALGKAIKPSEQEIAN 298

Query: 303 NRRSRSAKLRAGMR 316
           N RSRS+ LR   +
Sbjct: 299 NVRSRSSVLRVAEK 312


>gi|15799766|ref|NP_285778.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 EDL933]
 gi|15829340|ref|NP_308113.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           Sakai]
 gi|16128075|ref|NP_414624.1| 16S rRNA m(4)C1402 methyltranserfase, SAM-dependent [Escherichia
           coli str. K-12 substr. MG1655]
 gi|82542686|ref|YP_406633.1| S-adenosyl-methyltransferase MraW [Shigella boydii Sb227]
 gi|89106965|ref|AP_000745.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Escherichia coli str. K-12 substr. W3110]
 gi|91209146|ref|YP_539132.1| S-adenosyl-methyltransferase MraW [Escherichia coli UTI89]
 gi|110640295|ref|YP_668023.1| S-adenosyl-methyltransferase MraW [Escherichia coli 536]
 gi|157154775|ref|YP_001461252.1| S-adenosyl-methyltransferase MraW [Escherichia coli E24377A]
 gi|157159553|ref|YP_001456871.1| S-adenosyl-methyltransferase MraW [Escherichia coli HS]
 gi|168751408|ref|ZP_02776430.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           EC4113]
 gi|168755690|ref|ZP_02780697.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           EC4401]
 gi|168764039|ref|ZP_02789046.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           EC4501]
 gi|168771306|ref|ZP_02796313.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           EC4486]
 gi|168776926|ref|ZP_02801933.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           EC4196]
 gi|168781967|ref|ZP_02806974.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           EC4076]
 gi|168789609|ref|ZP_02814616.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           EC869]
 gi|168801509|ref|ZP_02826516.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           EC508]
 gi|170021562|ref|YP_001726516.1| S-adenosyl-methyltransferase MraW [Escherichia coli ATCC 8739]
 gi|170079721|ref|YP_001729041.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Escherichia coli str. K-12 substr. DH10B]
 gi|170679711|ref|YP_001742204.1| S-adenosyl-methyltransferase MraW [Escherichia coli SMS-3-5]
 gi|187731396|ref|YP_001878892.1| S-adenosyl-methyltransferase MraW [Shigella boydii CDC 3083-94]
 gi|188494231|ref|ZP_03001501.1| S-adenosyl-methyltransferase MraW [Escherichia coli 53638]
 gi|191167757|ref|ZP_03029564.1| S-adenosyl-methyltransferase MraW [Escherichia coli B7A]
 gi|191174644|ref|ZP_03036126.1| S-adenosyl-methyltransferase MraW [Escherichia coli F11]
 gi|193065897|ref|ZP_03046958.1| S-adenosyl-methyltransferase MraW [Escherichia coli E22]
 gi|193070829|ref|ZP_03051762.1| S-adenosyl-methyltransferase MraW [Escherichia coli E110019]
 gi|194429383|ref|ZP_03061908.1| S-adenosyl-methyltransferase MraW [Escherichia coli B171]
 gi|194439418|ref|ZP_03071495.1| S-adenosyl-methyltransferase MraW [Escherichia coli 101-1]
 gi|195939298|ref|ZP_03084680.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           EC4024]
 gi|208807673|ref|ZP_03250010.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           EC4206]
 gi|208812612|ref|ZP_03253941.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           EC4045]
 gi|208821818|ref|ZP_03262138.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           EC4042]
 gi|209400403|ref|YP_002268690.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           EC4115]
 gi|209917275|ref|YP_002291359.1| S-adenosyl-methyltransferase MraW [Escherichia coli SE11]
 gi|217324681|ref|ZP_03440765.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           TW14588]
 gi|218547539|ref|YP_002381330.1| S-adenosyl-methyltransferase MraW [Escherichia fergusonii ATCC
           35469]
 gi|218552665|ref|YP_002385578.1| S-adenosyl-methyltransferase MraW [Escherichia coli IAI1]
 gi|218557022|ref|YP_002389935.1| S-adenosyl-methyltransferase MraW [Escherichia coli S88]
 gi|218693551|ref|YP_002401218.1| S-adenosyl-methyltransferase MraW [Escherichia coli 55989]
 gi|218703342|ref|YP_002410861.1| S-adenosyl-methyltransferase MraW [Escherichia coli UMN026]
 gi|237704231|ref|ZP_04534712.1| S-adenosyl-methyltransferase MraW [Escherichia sp. 3_2_53FAA]
 gi|238899483|ref|YP_002925279.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Escherichia coli BW2952]
 gi|253774888|ref|YP_003037719.1| S-adenosyl-methyltransferase MraW [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254037497|ref|ZP_04871574.1| S-adenosyl-methyltransferase MraW [Escherichia sp. 1_1_43]
 gi|254160204|ref|YP_003043312.1| S-adenosyl-methyltransferase MraW [Escherichia coli B str. REL606]
 gi|254791219|ref|YP_003076056.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           TW14359]
 gi|256020080|ref|ZP_05433945.1| S-adenosyl-methyltransferase MraW [Shigella sp. D9]
 gi|256025396|ref|ZP_05439261.1| S-adenosyl-methyltransferase MraW [Escherichia sp. 4_1_40B]
 gi|260842318|ref|YP_003220096.1| S-adenosyl-dependent methyltransferase [Escherichia coli O103:H2
           str. 12009]
 gi|260853295|ref|YP_003227186.1| S-adenosyl-dependent methyltransferase [Escherichia coli O26:H11
           str. 11368]
 gi|260866235|ref|YP_003232637.1| S-adenosyl-dependent methyltransferase [Escherichia coli O111:H-
           str. 11128]
 gi|261226839|ref|ZP_05941120.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261255243|ref|ZP_05947776.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291280907|ref|YP_003497725.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Escherichia coli O55:H7 str. CB9615]
 gi|293403154|ref|ZP_06647251.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Escherichia coli FVEC1412]
 gi|293408175|ref|ZP_06652015.1| S-adenosyl-methyltransferase MraW [Escherichia coli B354]
 gi|293417958|ref|ZP_06660580.1| S-adenosyl-methyltransferase MraW [Escherichia coli B185]
 gi|293476742|ref|ZP_06665150.1| S-adenosyl-methyltransferase MraW [Escherichia coli B088]
 gi|297516902|ref|ZP_06935288.1| S-adenosyl-methyltransferase MraW [Escherichia coli OP50]
 gi|298378684|ref|ZP_06988568.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Escherichia coli FVEC1302]
 gi|300816120|ref|ZP_07096343.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 107-1]
 gi|300821913|ref|ZP_07102057.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 119-7]
 gi|300900887|ref|ZP_07119024.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 198-1]
 gi|300905491|ref|ZP_07123255.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 84-1]
 gi|300919637|ref|ZP_07136128.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 115-1]
 gi|300923135|ref|ZP_07139195.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 182-1]
 gi|300931791|ref|ZP_07147091.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 187-1]
 gi|300938477|ref|ZP_07153217.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 21-1]
 gi|300949900|ref|ZP_07163863.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 116-1]
 gi|300955948|ref|ZP_07168281.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 175-1]
 gi|300984504|ref|ZP_07176996.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 200-1]
 gi|301028563|ref|ZP_07191794.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 196-1]
 gi|301303818|ref|ZP_07209938.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 124-1]
 gi|301330140|ref|ZP_07222807.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 78-1]
 gi|301646394|ref|ZP_07246276.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 146-1]
 gi|306815320|ref|ZP_07449469.1| S-adenosyl-methyltransferase MraW [Escherichia coli NC101]
 gi|307136683|ref|ZP_07496039.1| S-adenosyl-methyltransferase MraW [Escherichia coli H736]
 gi|307311467|ref|ZP_07591109.1| S-adenosyl-methyltransferase MraW [Escherichia coli W]
 gi|309796072|ref|ZP_07690484.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 145-7]
 gi|312970176|ref|ZP_07784358.1| S-adenosyl-methyltransferase MraW [Escherichia coli 1827-70]
 gi|331661128|ref|ZP_08362060.1| S-adenosyl-methyltransferase MraW [Escherichia coli TA206]
 gi|331661456|ref|ZP_08362380.1| S-adenosyl-methyltransferase MraW [Escherichia coli TA143]
 gi|331666319|ref|ZP_08367200.1| S-adenosyl-methyltransferase MraW [Escherichia coli TA271]
 gi|331681467|ref|ZP_08382104.1| S-adenosyl-methyltransferase MraW [Escherichia coli H299]
 gi|332281230|ref|ZP_08393643.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Shigella sp. D9]
 gi|42559423|sp|P60391|RSMH_ECO57 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|42560200|sp|P60390|RSMH_ECOLI RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|88909217|sp|Q326F3|RSMH_SHIBS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|122425027|sp|Q1RGB3|RSMH_ECOUT RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|122958600|sp|Q0TLQ7|RSMH_ECOL5 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262826583|sp|B2U287|RSMH_SHIB3 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446391|sp|A7ZHH3|RSMH_ECO24 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446421|sp|B7LFV2|RSMH_ECO55 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446425|sp|B5YZB8|RSMH_ECO5E RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446445|sp|B7M125|RSMH_ECO8A RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446449|sp|C5W331|RSMH_ECOBB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446457|sp|C6UM45|RSMH_ECOBR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446461|sp|C4ZQ04|RSMH_ECOBW RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446465|sp|B1XC59|RSMH_ECODH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446468|sp|A7ZW34|RSMH_ECOHS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446964|sp|B1IR96|RSMH_ECOLC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446972|sp|B7N7V5|RSMH_ECOLU RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446978|sp|B6HZ59|RSMH_ECOSE RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446983|sp|B1LG19|RSMH_ECOSM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263447462|sp|B7MAK5|RSMH_ECO45 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263447500|sp|B7LWH0|RSMH_ESCF3 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263447897|sp|A1A7C7|RSMH_ECOK1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|12512785|gb|AAG54386.1|AE005185_3 putative apolipoprotein [Escherichia coli O157:H7 str. EDL933]
 gi|40850|emb|CAA38859.1| unnamed protein product [Escherichia coli]
 gi|42318|emb|CAA36283.1| unnamed protein product [Escherichia coli str. K-12 substr. W3110]
 gi|1786270|gb|AAC73193.1| 16S rRNA m(4)C1402 methyltranserfase, SAM-dependent [Escherichia
           coli str. K-12 substr. MG1655]
 gi|13359542|dbj|BAB33509.1| putative apolipoprotein [Escherichia coli O157:H7 str. Sakai]
 gi|21321963|dbj|BAB96650.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Escherichia coli str. K12 substr. W3110]
 gi|81244097|gb|ABB64805.1| putative apolipoprotein [Shigella boydii Sb227]
 gi|91070720|gb|ABE05601.1| S-adenosyl-dependent methyltransferase MraW [Escherichia coli
           UTI89]
 gi|110341887|gb|ABG68124.1| S-adenosyl-methyltransferase MraW [Escherichia coli 536]
 gi|157065233|gb|ABV04488.1| S-adenosyl-methyltransferase MraW [Escherichia coli HS]
 gi|157076805|gb|ABV16513.1| S-adenosyl-methyltransferase MraW [Escherichia coli E24377A]
 gi|169756490|gb|ACA79189.1| S-adenosyl-methyltransferase MraW [Escherichia coli ATCC 8739]
 gi|169887556|gb|ACB01263.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Escherichia coli str. K-12 substr. DH10B]
 gi|170517429|gb|ACB15607.1| S-adenosyl-methyltransferase MraW [Escherichia coli SMS-3-5]
 gi|187428388|gb|ACD07662.1| S-adenosyl-methyltransferase MraW [Shigella boydii CDC 3083-94]
 gi|187767771|gb|EDU31615.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           EC4196]
 gi|188014531|gb|EDU52653.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           EC4113]
 gi|188489430|gb|EDU64533.1| S-adenosyl-methyltransferase MraW [Escherichia coli 53638]
 gi|189000502|gb|EDU69488.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           EC4076]
 gi|189356993|gb|EDU75412.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           EC4401]
 gi|189359899|gb|EDU78318.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           EC4486]
 gi|189365898|gb|EDU84314.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           EC4501]
 gi|189370778|gb|EDU89194.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           EC869]
 gi|189376342|gb|EDU94758.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           EC508]
 gi|190902183|gb|EDV61925.1| S-adenosyl-methyltransferase MraW [Escherichia coli B7A]
 gi|190905079|gb|EDV64736.1| S-adenosyl-methyltransferase MraW [Escherichia coli F11]
 gi|192926484|gb|EDV81117.1| S-adenosyl-methyltransferase MraW [Escherichia coli E22]
 gi|192955859|gb|EDV86329.1| S-adenosyl-methyltransferase MraW [Escherichia coli E110019]
 gi|194412603|gb|EDX28900.1| S-adenosyl-methyltransferase MraW [Escherichia coli B171]
 gi|194421677|gb|EDX37687.1| S-adenosyl-methyltransferase MraW [Escherichia coli 101-1]
 gi|208727474|gb|EDZ77075.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           EC4206]
 gi|208733889|gb|EDZ82576.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           EC4045]
 gi|208741941|gb|EDZ89623.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           EC4042]
 gi|209161803|gb|ACI39236.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           EC4115]
 gi|209746626|gb|ACI71620.1| putative apolipoprotein [Escherichia coli]
 gi|209746628|gb|ACI71621.1| putative apolipoprotein [Escherichia coli]
 gi|209746630|gb|ACI71622.1| putative apolipoprotein [Escherichia coli]
 gi|209746632|gb|ACI71623.1| putative apolipoprotein [Escherichia coli]
 gi|209910534|dbj|BAG75608.1| S-adenosyl-methyltransferase [Escherichia coli SE11]
 gi|217320902|gb|EEC29326.1| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str.
           TW14588]
 gi|218350283|emb|CAU95966.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Escherichia coli 55989]
 gi|218355080|emb|CAQ87687.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Escherichia fergusonii ATCC 35469]
 gi|218359433|emb|CAQ96971.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Escherichia coli IAI1]
 gi|218363791|emb|CAR01451.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Escherichia coli S88]
 gi|218430439|emb|CAR11305.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Escherichia coli UMN026]
 gi|226840603|gb|EEH72605.1| S-adenosyl-methyltransferase MraW [Escherichia sp. 1_1_43]
 gi|226902143|gb|EEH88402.1| S-adenosyl-methyltransferase MraW [Escherichia sp. 3_2_53FAA]
 gi|238863507|gb|ACR65505.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Escherichia coli BW2952]
 gi|242375918|emb|CAQ30599.1| 16S rRNA m[4]C1402 methyltransferase [Escherichia coli BL21(DE3)]
 gi|253325932|gb|ACT30534.1| S-adenosyl-methyltransferase MraW [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253972105|gb|ACT37776.1| S-adenosyl-methyltransferase [Escherichia coli B str. REL606]
 gi|253976314|gb|ACT41984.1| S-adenosyl-methyltransferase [Escherichia coli BL21(DE3)]
 gi|254590619|gb|ACT69980.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Escherichia coli O157:H7 str. TW14359]
 gi|257751944|dbj|BAI23446.1| S-adenosyl-dependent methyltransferase [Escherichia coli O26:H11
           str. 11368]
 gi|257757465|dbj|BAI28962.1| S-adenosyl-dependent methyltransferase [Escherichia coli O103:H2
           str. 12009]
 gi|257762591|dbj|BAI34086.1| S-adenosyl-dependent methyltransferase [Escherichia coli O111:H-
           str. 11128]
 gi|260450711|gb|ACX41133.1| S-adenosyl-methyltransferase MraW [Escherichia coli DH1]
 gi|281177302|dbj|BAI53632.1| S-adenosyl-methyltransferase [Escherichia coli SE15]
 gi|290760780|gb|ADD54741.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Escherichia coli O55:H7 str. CB9615]
 gi|291321195|gb|EFE60637.1| S-adenosyl-methyltransferase MraW [Escherichia coli B088]
 gi|291430069|gb|EFF03083.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Escherichia coli FVEC1412]
 gi|291430676|gb|EFF03674.1| S-adenosyl-methyltransferase MraW [Escherichia coli B185]
 gi|291472426|gb|EFF14908.1| S-adenosyl-methyltransferase MraW [Escherichia coli B354]
 gi|294492092|gb|ADE90848.1| S-adenosyl-methyltransferase MraW [Escherichia coli IHE3034]
 gi|298281018|gb|EFI22519.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Escherichia coli FVEC1302]
 gi|299878407|gb|EFI86618.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 196-1]
 gi|300306673|gb|EFJ61193.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 200-1]
 gi|300317168|gb|EFJ66952.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 175-1]
 gi|300355651|gb|EFJ71521.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 198-1]
 gi|300402641|gb|EFJ86179.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 84-1]
 gi|300413277|gb|EFJ96587.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 115-1]
 gi|300420590|gb|EFK03901.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 182-1]
 gi|300450732|gb|EFK14352.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 116-1]
 gi|300456546|gb|EFK20039.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 21-1]
 gi|300460451|gb|EFK23944.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 187-1]
 gi|300525513|gb|EFK46582.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 119-7]
 gi|300531327|gb|EFK52389.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 107-1]
 gi|300840945|gb|EFK68705.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 124-1]
 gi|300843845|gb|EFK71605.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 78-1]
 gi|301075364|gb|EFK90170.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 146-1]
 gi|305850982|gb|EFM51437.1| S-adenosyl-methyltransferase MraW [Escherichia coli NC101]
 gi|306908446|gb|EFN38944.1| S-adenosyl-methyltransferase MraW [Escherichia coli W]
 gi|307629656|gb|ADN73960.1| S-adenosyl-methyltransferase MraW [Escherichia coli UM146]
 gi|308120314|gb|EFO57576.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 145-7]
 gi|309700293|emb|CBI99581.1| S-adenosyl-L-methionine-dependent methyltransferase [Escherichia
           coli ETEC H10407]
 gi|310337674|gb|EFQ02785.1| S-adenosyl-methyltransferase MraW [Escherichia coli 1827-70]
 gi|315059305|gb|ADT73632.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Escherichia coli W]
 gi|315134776|dbj|BAJ41935.1| S-adenosyl-methyltransferase MraW [Escherichia coli DH1]
 gi|315253156|gb|EFU33124.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 85-1]
 gi|315285172|gb|EFU44617.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 110-3]
 gi|315300017|gb|EFU59255.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 16-3]
 gi|315616139|gb|EFU96758.1| S-adenosyl-methyltransferase MraW [Escherichia coli 3431]
 gi|320172827|gb|EFW48059.1| rRNA small subunit methyltransferase H [Shigella dysenteriae CDC
           74-1112]
 gi|320183631|gb|EFW58474.1| rRNA small subunit methyltransferase H [Shigella flexneri CDC
           796-83]
 gi|320190395|gb|EFW65045.1| rRNA small subunit methyltransferase H [Escherichia coli O157:H7
           str. EC1212]
 gi|320197467|gb|EFW72081.1| rRNA small subunit methyltransferase H [Escherichia coli WV_060327]
 gi|320200399|gb|EFW74985.1| rRNA small subunit methyltransferase H [Escherichia coli EC4100B]
 gi|320642121|gb|EFX11472.1| 16S rRNA m(4)C1402 methyltranserfase [Escherichia coli O157:H7 str.
           G5101]
 gi|320658207|gb|EFX25936.1| 16S rRNA m(4)C1402 methyltranserfase [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320663516|gb|EFX30800.1| 16S rRNA m(4)C1402 methyltranserfase [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320668828|gb|EFX35623.1| 16S rRNA m(4)C1402 methyltranserfase [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323157851|gb|EFZ43954.1| S-adenosyl-methyltransferase MraW [Escherichia coli EPECa14]
 gi|323160120|gb|EFZ46081.1| S-adenosyl-methyltransferase MraW [Escherichia coli E128010]
 gi|323176390|gb|EFZ61982.1| S-adenosyl-methyltransferase MraW [Escherichia coli 1180]
 gi|323181779|gb|EFZ67192.1| S-adenosyl-methyltransferase MraW [Escherichia coli 1357]
 gi|323190236|gb|EFZ75512.1| S-adenosyl-methyltransferase MraW [Escherichia coli RN587/1]
 gi|323380137|gb|ADX52405.1| S-adenosyl-methyltransferase MraW [Escherichia coli KO11]
 gi|323935134|gb|EGB31501.1| S-adenosyl-methyltransferase MraW [Escherichia coli E1520]
 gi|323939878|gb|EGB36078.1| S-adenosyl-methyltransferase MraW [Escherichia coli E482]
 gi|323945711|gb|EGB41759.1| S-adenosyl-methyltransferase MraW [Escherichia coli H120]
 gi|323950922|gb|EGB46799.1| S-adenosyl-methyltransferase MraW [Escherichia coli H252]
 gi|323955280|gb|EGB51053.1| S-adenosyl-methyltransferase MraW [Escherichia coli H263]
 gi|323960028|gb|EGB55674.1| S-adenosyl-methyltransferase MraW [Escherichia coli H489]
 gi|323964822|gb|EGB60289.1| S-adenosyl-methyltransferase MraW [Escherichia coli M863]
 gi|323970754|gb|EGB66008.1| S-adenosyl-methyltransferase MraW [Escherichia coli TA007]
 gi|323975754|gb|EGB70850.1| S-adenosyl-methyltransferase MraW [Escherichia coli TW10509]
 gi|324012284|gb|EGB81503.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 60-1]
 gi|324017757|gb|EGB86976.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 117-3]
 gi|324112505|gb|EGC06482.1| S-adenosyl-methyltransferase MraW [Escherichia fergusonii B253]
 gi|324118432|gb|EGC12326.1| S-adenosyl-methyltransferase MraW [Escherichia coli E1167]
 gi|325496018|gb|EGC93877.1| S-adenosyl-methyltransferase MraW [Escherichia fergusonii ECD227]
 gi|326345198|gb|EGD68941.1| rRNA small subunit methyltransferase H [Escherichia coli O157:H7
           str. 1125]
 gi|326346948|gb|EGD70682.1| rRNA small subunit methyltransferase H [Escherichia coli O157:H7
           str. 1044]
 gi|327255060|gb|EGE66663.1| S-adenosyl-methyltransferase MraW [Escherichia coli STEC_7v]
 gi|330909929|gb|EGH38439.1| rRNA small subunit methyltransferase H [Escherichia coli AA86]
 gi|331052170|gb|EGI24209.1| S-adenosyl-methyltransferase MraW [Escherichia coli TA206]
 gi|331061371|gb|EGI33334.1| S-adenosyl-methyltransferase MraW [Escherichia coli TA143]
 gi|331066530|gb|EGI38407.1| S-adenosyl-methyltransferase MraW [Escherichia coli TA271]
 gi|331081688|gb|EGI52849.1| S-adenosyl-methyltransferase MraW [Escherichia coli H299]
 gi|332095373|gb|EGJ00396.1| S-adenosyl-methyltransferase MraW [Shigella boydii 5216-82]
 gi|332098926|gb|EGJ03877.1| S-adenosyl-methyltransferase MraW [Shigella boydii 3594-74]
 gi|332103582|gb|EGJ06928.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Shigella sp. D9]
 gi|332341414|gb|AEE54748.1| S-adenosyl-methyltransferase MraW [Escherichia coli UMNK88]
 gi|333010578|gb|EGK30011.1| S-adenosyl-methyltransferase MraW [Shigella flexneri VA-6]
 gi|333011470|gb|EGK30884.1| S-adenosyl-methyltransferase MraW [Shigella flexneri K-272]
 gi|333021712|gb|EGK40961.1| S-adenosyl-methyltransferase MraW [Shigella flexneri K-227]
          Length = 313

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 118/312 (37%), Positives = 179/312 (57%), Gaps = 19/312 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++  +
Sbjct: 6   KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +FS+    FS L +YV ++     +DG++ DLGVSS Q+D  +RGFSF + G
Sbjct: 66  TI---DDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDG 122

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   T++
Sbjct: 123 PLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKE 182

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L ++SF
Sbjct: 183 LAEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISF 241

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305
           HSLEDR+VK+F    S        +  +            +++ K  ++P +E+VA N R
Sbjct: 242 HSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGK--LMPGEEEVAENPR 299

Query: 306 SRSAKLRAGMRT 317
           +RS+ LR   RT
Sbjct: 300 ARSSVLRIAERT 311


>gi|160944903|ref|ZP_02092130.1| hypothetical protein FAEPRAM212_02419 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444087|gb|EDP21091.1| hypothetical protein FAEPRAM212_02419 [Faecalibacterium prausnitzii
           M21/2]
          Length = 321

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 112/315 (35%), Positives = 166/315 (52%), Gaps = 12/315 (3%)

Query: 12  AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-----KMGSNVIALDR 66
                  +H+PVLL + +  L   P    LD T G  G+SR          G  +I+LD+
Sbjct: 8   PFDPASFEHIPVLLNECLTGLAIDPAGTYLDGTAGGAGHSRQIALRLDAAKGGRLISLDQ 67

Query: 67  DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDR 123
           DP AV   +  +       ++ Q  F      +   G+   +G + DLGVSS Q+D   R
Sbjct: 68  DPDAVQTARSRLAGLPA--TVVQINFRYAGQALEQLGIEKINGALLDLGVSSHQLDDAAR 125

Query: 124 GFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           GFS++   PLDMRMS  G +A+D+VN  + ++L RIL   GEE  A +IA  IV+ R++A
Sbjct: 126 GFSYRADAPLDMRMSQQGETAADLVNTESREELARILRDYGEEPYAWQIAGKIVEARETA 185

Query: 184 PFQTTQDLSSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           P  TT  L+ ++   +  ++  +  +P+ R+FQALRI VN+E++ L +GL +    L  G
Sbjct: 186 PILTTLQLADIVASAMPPAERRKNKNPSRRTFQALRIAVNHELDALEEGLDTIFDHLAPG 245

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVA 301
           G L V++FHSLEDRLVK  F   S          +      A  + IT+K +    +++ 
Sbjct: 246 GRLCVITFHSLEDRLVKNKFRRWSTACTCPPEFPVCVCGGKAKAKLITRKPIEADTQELE 305

Query: 302 FNRRSRSAKLRAGMR 316
            NRRSRSA LR   +
Sbjct: 306 ENRRSRSAHLRVLEK 320


>gi|298293108|ref|YP_003695047.1| S-adenosyl-methyltransferase MraW [Starkeya novella DSM 506]
 gi|296929619|gb|ADH90428.1| S-adenosyl-methyltransferase MraW [Starkeya novella DSM 506]
          Length = 345

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 143/323 (44%), Positives = 203/323 (62%), Gaps = 6/323 (1%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQE 76
             H+PVLL +V+  L P  G + +D TFGAGGY+ +     G++VIA+DRDP A+  GQ 
Sbjct: 17  ARHLPVLLAEVVEHLAPKDGGLYIDGTFGAGGYTSAILNAAGTSVIAIDRDPTAIEGGQG 76

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +     + +L    FS L +    +G   VDGVV D+GVSSMQID G+RGFSF++ GPL
Sbjct: 77  LVAASGGRLTLVHERFSALDEVAAAQGIDAVDGVVLDIGVSSMQIDEGERGFSFRRDGPL 136

Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           DMRMS  G SA+D+V + +  DL  ++   GEE+ +  +A AIV  R+ AP + T  L+ 
Sbjct: 137 DMRMSSEGPSAADLVAKLSETDLANLIFRFGEERHSRAVARAIVAARKEAPIERTLQLAD 196

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           ++ K V+ +K +  HPATR+FQALRI VN+E+ ELA+ L +AE+ LK GG L+VV+FHSL
Sbjct: 197 IVAKVVW-AKPHEPHPATRTFQALRIAVNDELGELARALSAAERVLKPGGRLVVVTFHSL 255

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           EDR+VK F A+R+      RHM    + P  F+ + +  V P +E++A N R+RS++LRA
Sbjct: 256 EDRIVKTFLANRAKAAAGSRHMPALQSAPPSFKLVARGAVEPGEEELARNPRARSSRLRA 315

Query: 314 GMRTVERSIEDDSFVH-LPRLPT 335
             RT   +         LP +P 
Sbjct: 316 AERTEAPAHPAGDLSSLLPPVPD 338


>gi|284919862|emb|CBG32917.1| S-adenosyl-L-methionine-dependent methyltransferase [Escherichia
           coli 042]
          Length = 312

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 118/312 (37%), Positives = 179/312 (57%), Gaps = 19/312 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++  +
Sbjct: 5   KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK 64

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +FS+    FS L +YV ++     +DG++ DLGVSS Q+D  +RGFSF + G
Sbjct: 65  TI---DDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDG 121

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   T++
Sbjct: 122 PLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKE 181

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L ++SF
Sbjct: 182 LAEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISF 240

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305
           HSLEDR+VK+F    S        +  +            +++ K  ++P +E+VA N R
Sbjct: 241 HSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGK--LMPGEEEVAENPR 298

Query: 306 SRSAKLRAGMRT 317
           +RS+ LR   RT
Sbjct: 299 ARSSVLRIAERT 310


>gi|218698505|ref|YP_002406134.1| S-adenosyl-methyltransferase MraW [Escherichia coli IAI39]
 gi|263446431|sp|B7NHI8|RSMH_ECO7I RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|218368491|emb|CAR16226.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Escherichia coli IAI39]
          Length = 313

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 119/312 (38%), Positives = 179/312 (57%), Gaps = 19/312 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++  +
Sbjct: 6   KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQFGEEGRLLAIDRDPQAIAVAK 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +FS+    FS L DYV ++     +DG++ DLGVSS Q+D  +RGFSF + G
Sbjct: 66  TI---DDPRFSIIHGPFSALGDYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDG 122

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   T++
Sbjct: 123 PLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKE 182

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L ++SF
Sbjct: 183 LAEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISF 241

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305
           HSLEDR+VK+F    S        +  +            +++ K  ++P +E+VA N R
Sbjct: 242 HSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGK--LMPGEEEVAENPR 299

Query: 306 SRSAKLRAGMRT 317
           +RS+ LR   RT
Sbjct: 300 ARSSVLRIAERT 311


>gi|191638270|ref|YP_001987436.1| S-adenosyl-methyltransferase MraW [Lactobacillus casei BL23]
 gi|239631645|ref|ZP_04674676.1| SAM-dependent methyltransferase for cell envelope biogenesis
           [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|301066319|ref|YP_003788342.1| SAM-dependent methyltransferase for cell envelope biogenesis
           [Lactobacillus casei str. Zhang]
 gi|263456244|sp|B3WDX7|RSMH_LACCB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|190712572|emb|CAQ66578.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Lactobacillus casei BL23]
 gi|239526110|gb|EEQ65111.1| SAM-dependent methyltransferase for cell envelope biogenesis
           [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|300438726|gb|ADK18492.1| SAM-dependent methyltransferase for cell envelope biogenesis
           [Lactobacillus casei str. Zhang]
 gi|327382302|gb|AEA53778.1| Ribosomal RNA small subunit methyltransferase H [Lactobacillus
           casei LC2W]
 gi|327385497|gb|AEA56971.1| Ribosomal RNA small subunit methyltransferase H [Lactobacillus
           casei BD-II]
          Length = 313

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 112/311 (36%), Positives = 162/311 (52%), Gaps = 10/311 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73
           T   H  VLL++  A L   P  + +DAT G GG++R          +IA D+D  A++ 
Sbjct: 2   TEFKHETVLLKEATAALAVKPAGIYVDATLGRGGHTRQILNQLTTGRLIAFDQDEAAIAT 61

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
                    +Q +L    F  L D +   G   VDG+++DLGVSS Q D   RGFS++  
Sbjct: 62  VTADFGTLPKQLTLVHRNFRDLTDALTTLGITEVDGILYDLGVSSPQFDDSKRGFSYRFD 121

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM     + A  +VN+    DL RI    GEE  + +IA  I + R   P  TT 
Sbjct: 122 APLDMRMDQRQTLDAKTIVNEWPYADLVRIFSRYGEEHFSKQIARRIEQARTVQPITTTF 181

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L  LI+  +    +    HPA + FQA+RI VN+E+  L   L  A K +  GG + V+
Sbjct: 182 QLVELIKAGIPAKARRTGGHPAKKVFQAIRIAVNDELSALESSLEQALKLINVGGRISVI 241

Query: 249 SFHSLEDRLVKKFFASRS--GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           +F SLEDRLVK  F   S    V     +IP++A P  ++ + +K ++P++E++A N R+
Sbjct: 242 TFQSLEDRLVKTMFKEVSSVQDVPRGLPVIPASAQPN-YRLVNRKPILPSEEELAVNHRA 300

Query: 307 RSAKLRAGMRT 317
            SAKLR   + 
Sbjct: 301 HSAKLRVIEKI 311


>gi|295104209|emb|CBL01753.1| S-adenosyl-methyltransferase MraW [Faecalibacterium prausnitzii
           SL3/3]
          Length = 321

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 112/315 (35%), Positives = 166/315 (52%), Gaps = 12/315 (3%)

Query: 12  AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-----KMGSNVIALDR 66
                  +H+PVLL + +  L   P    LD T G  G+SR          G  +I+LD+
Sbjct: 8   PFDPASFEHIPVLLNECLTGLAIDPAGTYLDGTAGGAGHSRQIALRLDAAKGGRLISLDQ 67

Query: 67  DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDR 123
           DP AV   +  +       ++ Q  F      +   G+   +G + DLGVSS Q+D   R
Sbjct: 68  DPDAVQTARSRLAGLPA--TVVQINFRYAGQALEQLGIEKINGALLDLGVSSHQLDDAAR 125

Query: 124 GFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           GFS++   PLDMRMS  G +A+D+VN  + ++L RIL   GEE  A +IA  IV+ R++A
Sbjct: 126 GFSYRADAPLDMRMSQQGETAADLVNTESREELARILRDYGEEPYAWQIAGKIVETRETA 185

Query: 184 PFQTTQDLSSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           P  TT  L+ ++   +  ++  +  +P+ R+FQALRI VN+E++ L +GL +    L  G
Sbjct: 186 PILTTLQLADIVASAMPPAERRKNKNPSRRTFQALRIAVNHELDALEEGLDTIFDHLAPG 245

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVA 301
           G L V++FHSLEDRLVK  F   S          +      A  + IT+K +    +++ 
Sbjct: 246 GRLCVITFHSLEDRLVKNKFRRWSTACTCPPEFPVCVCGGKAKAKLITRKPIEADTQELE 305

Query: 302 FNRRSRSAKLRAGMR 316
            NRRSRSA LR   +
Sbjct: 306 ENRRSRSAHLRVLEK 320


>gi|323466809|gb|ADX70496.1| Ribosomal RNA small subunit methyltransferase H [Lactobacillus
           helveticus H10]
          Length = 349

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 109/337 (32%), Positives = 173/337 (51%), Gaps = 21/337 (6%)

Query: 1   MESKSCKTMSS------AIHHTI--GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSR 52
           ++ K  KTM +       +++ I    H  VLL + I  L P  G + +DATFG GG+++
Sbjct: 12  LKKKLTKTMMTLLKIWTTLNYKIMKFKHTSVLLHETIDNLKPKNGGLYVDATFGGGGHAK 71

Query: 53  SFCKM--GSNVIALDRDPFAVSCGQETMRDY-----KEQFSLFQATFSQLQDYVPD---- 101
                     ++  D+D +A+   +    D      + +  L    FS L+  +      
Sbjct: 72  YLLSKIETGTLVGFDQDEYAIKSAELNFADLLQPDSEPRLKLVHDNFSNLEQDLVKLGYS 131

Query: 102 KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGIS-ASDVVNQANVKDLTRIL 160
            G+DG+ +DLGVSS Q D  DRGFS++ +  LDMRM  S  + A  +VN  + K+L  IL
Sbjct: 132 DGIDGIYYDLGVSSPQFDQADRGFSYRYNARLDMRMDQSQDTDAYQLVNTLSQKELADIL 191

Query: 161 GILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRI 219
              G+EK + +IAH IV+RR+  P  TT  L  +I++ +   ++    HPA +SFQALR+
Sbjct: 192 YQYGDEKFSRQIAHRIVERRKDKPIVTTFQLVDIIKEAIPAYARRTGGHPAKKSFQALRV 251

Query: 220 FVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSN 279
            VN+E++ L   L  A + L+ GG + V++F S ED++VKK F   S   +        +
Sbjct: 252 AVNHELDVLQASLEEAIRILRPGGRISVITFQSHEDKIVKKIFKKYSEVEVPRGMPFVPD 311

Query: 280 AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
                 +   +K +  +  ++  N RS SAKLR   +
Sbjct: 312 DMKPTLRLENRKPITASTSELENNNRSHSAKLRVAEK 348


>gi|146276735|ref|YP_001166894.1| S-adenosyl-methyltransferase MraW [Rhodobacter sphaeroides ATCC
           17025]
 gi|262825577|sp|A4WQC5|RSMH_RHOS5 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|145554976|gb|ABP69589.1| S-adenosyl-methyltransferase MraW [Rhodobacter sphaeroides ATCC
           17025]
          Length = 331

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 148/331 (44%), Positives = 205/331 (61%), Gaps = 5/331 (1%)

Query: 11  SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPF 69
           +A       H+PVLL  ++A + P    V LD TFGAGGY+R   + G+  VI +DRDP 
Sbjct: 2   AAAETGRRPHIPVLLRPLLAAVAPVS-GVWLDGTFGAGGYARGLLEAGADRVIGVDRDPL 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
           A+   Q+    Y ++  L   TFSQL  +  +  +DGVV DLGVSSMQ+D  DRGFSFQK
Sbjct: 61  ALEMAQDWAGAYGDRLRLVAGTFSQLDVHAGEP-LDGVVLDLGVSSMQLDQADRGFSFQK 119

Query: 130 SGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            GPLDMRMS  G SA+D+VN+A+ + L  IL   GEE+ + RIA AIV+ R + P   T 
Sbjct: 120 DGPLDMRMSQQGESAADLVNEASEETLADILYHYGEERASRRIARAIVEARAAGPITRTL 179

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            L+ ++ + +   K  ++HPATRSFQA+RI VN E  EL +GL +AE+ALK GG L VV+
Sbjct: 180 HLAEIVARCLPRPKPGQMHPATRSFQAIRIAVNAEFSELVEGLEAAERALKPGGRLAVVT 239

Query: 250 FHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK+F   RS G+    R+   + A  A F    ++ + P + ++A N R+RS
Sbjct: 240 FHSLEDRIVKRFLQLRSGGEGQGNRYAPETRAEAARFTLPLRRAISPDEAELADNPRARS 299

Query: 309 AKLRAGMRTVERSIE-DDSFVHLPRLPTLSQ 338
           A+LR G+RT   +   D   + +P +P   +
Sbjct: 300 ARLRVGVRTDAPAGPVDPQVLGMPLIPKKGR 330


>gi|238916664|ref|YP_002930181.1| S-adenosyl-methyltransferase [Eubacterium eligens ATCC 27750]
 gi|263447037|sp|C4Z530|RSMH_EUBE2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|238872024|gb|ACR71734.1| S-adenosyl-methyltransferase [Eubacterium eligens ATCC 27750]
          Length = 315

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 98/308 (31%), Positives = 166/308 (53%), Gaps = 9/308 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
            H  VLLE+ I  LN  P  + +D T G  G+S    K    G  +I +D+D  A++   
Sbjct: 8   KHKSVLLEETIDNLNIKPDGIYVDGTLGGAGHSYQIAKRLTGGGRLIGIDQDADAIAAAT 67

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E +++++E+ ++ +  +  +   + + G   VDG++ D+GVSS Q+D   RGF++     
Sbjct: 68  ERLKEFEERVTIVRNNYCNMDKVLDELGIDKVDGILLDIGVSSYQLDTASRGFTYNVDTA 127

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM     ++A D+VN  +  +L RI+   GE++ A  IA  IV  R+  P +TT +L
Sbjct: 128 LDMRMDQRQEMTAKDLVNTYSEMELFRIIRDYGEDRFAKNIAKHIVAARKEKPIETTFEL 187

Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           + +I+ ++    +    HP+ R++QA+RI +N E++ L   +      L   G L +++F
Sbjct: 188 NEIIKASIPAKVRATGGHPSKRTYQAIRIELNRELDVLENSIDMMIDRLNPQGRLCIITF 247

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  F +            +      +  + IT+K +VP  E++  N+RS+S+
Sbjct: 248 HSLEDRIVKARFRNNENPCTCPPDFPVCVCGKKSKGKVITRKPIVPGDEELNENQRSKSS 307

Query: 310 KLRAGMRT 317
           KLR   R 
Sbjct: 308 KLRVFERI 315


>gi|24111527|ref|NP_706037.1| S-adenosyl-methyltransferase MraW [Shigella flexneri 2a str. 301]
 gi|30061649|ref|NP_835820.1| S-adenosyl-methyltransferase MraW [Shigella flexneri 2a str. 2457T]
 gi|42559469|sp|Q83SN7|RSMH_SHIFL RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|24050285|gb|AAN41744.1| putative apolipoprotein [Shigella flexneri 2a str. 301]
 gi|30039891|gb|AAP15625.1| putative apolipoprotein [Shigella flexneri 2a str. 2457T]
 gi|281599444|gb|ADA72428.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Shigella
           flexneri 2002017]
 gi|313646535|gb|EFS10996.1| S-adenosyl-methyltransferase MraW [Shigella flexneri 2a str. 2457T]
 gi|332762256|gb|EGJ92523.1| S-adenosyl-methyltransferase MraW [Shigella flexneri 2747-71]
 gi|332762643|gb|EGJ92908.1| S-adenosyl-methyltransferase MraW [Shigella flexneri 4343-70]
 gi|332764928|gb|EGJ95156.1| S-adenosyl-methyltransferase MraW [Shigella flexneri K-671]
 gi|333009116|gb|EGK28572.1| S-adenosyl-methyltransferase MraW [Shigella flexneri K-218]
 gi|333022474|gb|EGK41712.1| S-adenosyl-methyltransferase MraW [Shigella flexneri K-304]
          Length = 313

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 118/312 (37%), Positives = 178/312 (57%), Gaps = 19/312 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++  +
Sbjct: 6   KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +FS+    FS L +YV ++     +DG++ DLGVSS Q+D  +RGFSF + G
Sbjct: 66  TI---DDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDG 122

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + G SA++ +  A   D+  +L   GEE  A RIA AIV+R +  P   T++
Sbjct: 123 PLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEEHFAKRIARAIVERNREQPMTRTKE 182

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L ++SF
Sbjct: 183 LAEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISF 241

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305
           HSLEDR+VK+F    S        +  +            +++ K  ++P +E+VA N R
Sbjct: 242 HSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGK--LMPGEEEVAENPR 299

Query: 306 SRSAKLRAGMRT 317
           +RS+ LR   RT
Sbjct: 300 ARSSVLRIAERT 311


>gi|323486709|ref|ZP_08092030.1| hypothetical protein HMPREF9474_03781 [Clostridium symbiosum
           WAL-14163]
 gi|323400090|gb|EGA92467.1| hypothetical protein HMPREF9474_03781 [Clostridium symbiosum
           WAL-14163]
          Length = 314

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 98/312 (31%), Positives = 173/312 (55%), Gaps = 10/312 (3%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSC 73
           I  H  VLL++ I  L+  P  + +D T G GG++   C+        I +D+D  A++ 
Sbjct: 2   IFGHKSVLLDETIESLDIKPDGIYVDGTLGGGGHASEVCRRLGDKGRFIGIDQDADAIAA 61

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
             E ++++ ++ ++ ++ +  + + + + G   VDG+  DLGVSS Q+D  +RGF++++ 
Sbjct: 62  ASERLKEFGDKVTIVRSNYENIDEVLKELGISQVDGIYLDLGVSSYQLDTAERGFTYRED 121

Query: 131 -GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM   + ++A D+VN  +  +L  I+   GE++ A  IA  IV+ RQ    +TT
Sbjct: 122 DAPLDMRMDQRNEMTAKDIVNTYSESELFHIIKNYGEDRFAKNIAKHIVRARQEKEIETT 181

Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L  +I+  +    +    HPA R+FQA+RI +N E+E L   +      L  GG L +
Sbjct: 182 GELIEIIKAAIPAKVRATGGHPAKRTFQAIRIELNKELEVLENSIDKMTDLLAPGGRLSI 241

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           ++FHSLEDR+VK  F              +      +  + +T+K ++P++E+++ N+RS
Sbjct: 242 ITFHSLEDRIVKNRFRINENPCTCPPDFPVCMCGKKSKGRVVTRKPILPSEEELSENKRS 301

Query: 307 RSAKLRAGMRTV 318
           +SAKLR   ++ 
Sbjct: 302 KSAKLRVFEKSR 313


>gi|240141491|ref|YP_002965971.1| S-adenosyl-dependent methyltransferase [Methylobacterium extorquens
           AM1]
 gi|263456428|sp|C5ATZ5|RSMH_METEA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|240011468|gb|ACS42694.1| S-adenosyl-dependent methyltransferase [Methylobacterium extorquens
           AM1]
          Length = 351

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 147/331 (44%), Positives = 201/331 (60%), Gaps = 9/331 (2%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQ 75
             HVPVLL +V+A L+     + +D TFGAGGY+R+  + G    VIA+DRDP A+  G 
Sbjct: 18  ARHVPVLLAEVLAALSLDRPGLAVDGTFGAGGYTRALLEAGPEVRVIAIDRDPTAIRGGA 77

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + +     +  L Q  F  L   + D+     D +V D+GVSSMQID   RGFSF++ GP
Sbjct: 78  DLVTASGGRLRLVQGRFGDLDTLIADQDEAQADWIVLDIGVSSMQIDEAQRGFSFRQDGP 137

Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           LDMRM   G SA+D+VN      L  IL   GEE+++  +A AIV+ R+ AP +TT  L+
Sbjct: 138 LDMRMGGEGPSAADLVNGEEETTLADILYHFGEERRSRAVARAIVEARRRAPIETTAQLA 197

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            L+   V     + IHPATRSFQ LRI VN+E+ EL +GL +AE+ LK GG L VV+FHS
Sbjct: 198 DLVAGVVRPEPGSPIHPATRSFQGLRIAVNDELGELVRGLHAAERVLKPGGRLAVVTFHS 257

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRSAK 310
           LEDR+VK+FF++RSG+       +P    PA   F+ +TK  V+P++ +   N RSRSAK
Sbjct: 258 LEDRIVKQFFSARSGRAAQASRHVPGVERPAPKSFKLVTKGPVLPSEAETDVNPRSRSAK 317

Query: 311 LRAGMRTVERSIEDDSFVHLPRLPTLSQFRG 341
           LRAG RT   +    S + +  L +L   +G
Sbjct: 318 LRAGERTDAPAPPPLSAIEM--LASLPAPQG 346


>gi|196230915|ref|ZP_03129776.1| S-adenosyl-methyltransferase MraW [Chthoniobacter flavus Ellin428]
 gi|196225256|gb|EDY19765.1| S-adenosyl-methyltransferase MraW [Chthoniobacter flavus Ellin428]
          Length = 332

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 125/303 (41%), Positives = 177/303 (58%), Gaps = 7/303 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H  VLL + +  L PAPGKVI+D T G GG++ +    G+ VI  D+DP A++     + 
Sbjct: 28  HESVLLAETVERLAPAPGKVIVDGTLGGGGHTAALLAAGAQVIGFDQDPEALAFAGRKLA 87

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
           ++  QF     +F++  + +   GV   DG + DLGVSS Q+D  +RGFSF   GPLDMR
Sbjct: 88  EFGGQFRPVHTSFAKAGEALDQLGVEKIDGAMLDLGVSSRQLDAPERGFSFMHDGPLDMR 147

Query: 137 MSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M  + + SA+D+VN      L +I    GEE  A +IA  +V+ R  APF+TT  L+  +
Sbjct: 148 MDPTNLISAADLVNTMAGDQLEKIFRNYGEEPAARKIAAHLVRDRLVAPFRTTLQLAQAV 207

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           ++ V   +++R HPATR FQALRI VN E+E L  GL    + L  GG L +++FHSLED
Sbjct: 208 ERVVP--RHSRTHPATRVFQALRIAVNRELEALTLGLEQFSQRLAPGGRLAIITFHSLED 265

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHP-AVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           R+VK FF  R+   +       +  +P  +F++IT K VV +  +   N RSRSAKLR  
Sbjct: 266 RIVKVFFKERAAAFIDRPEWPEARPNPIHIFKAITGKPVVASDAEQRANPRSRSAKLRVV 325

Query: 315 MRT 317
            R 
Sbjct: 326 ERI 328


>gi|332768872|gb|EGJ99051.1| S-adenosyl-methyltransferase MraW [Shigella flexneri 2930-71]
          Length = 312

 Score =  368 bits (945), Expect = e-100,   Method: Composition-based stats.
 Identities = 118/312 (37%), Positives = 178/312 (57%), Gaps = 19/312 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++  +
Sbjct: 5   KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK 64

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +FS+    FS L +YV ++     +DG++ DLGVSS Q+D  +RGFSF + G
Sbjct: 65  TI---DDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDG 121

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + G SA++ +  A   D+  +L   GEE  A RIA AIV+R +  P   T++
Sbjct: 122 PLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEEHFAKRIARAIVERNREQPMTRTKE 181

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L ++SF
Sbjct: 182 LAEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISF 240

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305
           HSLEDR+VK+F    S        +  +            +++ K  ++P +E+VA N R
Sbjct: 241 HSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGK--LMPGEEEVAENPR 298

Query: 306 SRSAKLRAGMRT 317
           +RS+ LR   RT
Sbjct: 299 ARSSVLRIAERT 310


>gi|323440951|gb|EGA98658.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus O11]
 gi|323442268|gb|EGA99898.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus O46]
          Length = 304

 Score =  368 bits (945), Expect = e-100,   Method: Composition-based stats.
 Identities = 99/301 (32%), Positives = 158/301 (52%), Gaps = 9/301 (2%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRD 80
           +L + I  LN     V +D T G  G++            +IA+D+D  A+   +E ++D
Sbjct: 1   MLNETIDYLNVKENGVYIDCTLGGAGHALYLLNQLNDDGRLIAIDQDQTAIDNAKEVLKD 60

Query: 81  YKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
           +  + +   + F +L   + D   + VDG+ +DLGVSS Q+D  +RGFS+     LDMRM
Sbjct: 61  HLHKVTFVHSNFRELTQILKDLNIEKVDGIYYDLGVSSPQLDIPERGFSYHHDATLDMRM 120

Query: 138 SCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
             +  ++A ++VN  + + L +I    GEEK + +IA  I   R+  P  TT +L  +I+
Sbjct: 121 DQTQELTAYEIVNNWSYEALVKIFYRYGEEKFSKQIARRIEAHREQQPITTTLELVDIIK 180

Query: 197 KTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           + +    +    HPA R FQALRI VN+E+      +  A + +K GG + V++FHSLED
Sbjct: 181 EGIPAKARRKGGHPAKRVFQALRIAVNDELSAFEDSIEQAIELVKVGGRISVITFHSLED 240

Query: 256 RLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           RL K+ F          R   +   A+    + + +K +  T+ED+  N R+RSAKLR  
Sbjct: 241 RLCKQVFQEYEKGPEVPRGLPVIPEAYTPKLKRVNRKPITATEEDLDDNNRARSAKLRVA 300

Query: 315 M 315
            
Sbjct: 301 E 301


>gi|301026110|ref|ZP_07189585.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 69-1]
 gi|300395681|gb|EFJ79219.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 69-1]
          Length = 313

 Score =  368 bits (945), Expect = e-100,   Method: Composition-based stats.
 Identities = 119/312 (38%), Positives = 179/312 (57%), Gaps = 19/312 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A+S  +
Sbjct: 6   KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAISVAK 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +FS+    FS L +YV ++     +DG++ DLGVSS Q+D  +RGFSF + G
Sbjct: 66  TI---DDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDG 122

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   T++
Sbjct: 123 PLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKE 182

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L ++SF
Sbjct: 183 LAEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISF 241

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305
           HSLEDR+VK+F    S        +  +            +++ K  ++P +E+VA N R
Sbjct: 242 HSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGK--LMPGEEEVAENPR 299

Query: 306 SRSAKLRAGMRT 317
           +RS+ LR   RT
Sbjct: 300 ARSSVLRIAERT 311


>gi|15606908|ref|NP_214289.1| hypothetical protein aq_1875 [Aquifex aeolicus VF5]
 gi|8134826|sp|O67721|RSMH_AQUAE RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|2984161|gb|AAC07695.1| hypothetical protein aq_1875 [Aquifex aeolicus VF5]
          Length = 294

 Score =  368 bits (945), Expect = e-100,   Method: Composition-based stats.
 Identities = 122/305 (40%), Positives = 181/305 (59%), Gaps = 22/305 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H PVLL + +  L    GK+ +D T G GG+++   K   +  +I +DRD  A+   +E 
Sbjct: 5   HKPVLLRESVEFLTENGGKIYVDCTLGGGGHAKEILKKRKDIFLIGIDRDEEAIEIAKEN 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +++++ +FS+++A F  L   + ++G   VDG +FDLGVS  Q+  G+RGF+FQ+  PLD
Sbjct: 65  LKEFEGRFSIYKANFKDLDLVLKEEGIDKVDGFLFDLGVSMYQLK-GERGFTFQEDQPLD 123

Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM     ++A  VVN    ++L RIL   GEEK A RIA AIV+RR+  P +TT +L  
Sbjct: 124 MRMDKEQTLTACKVVNNYPERELIRILKEYGEEKFAVRIAKAIVQRRKKKPIETTGELVD 183

Query: 194 LIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +I   V  + K+ +IHPATR+FQA+RI VN E+E L + L        + G L+V++FHS
Sbjct: 184 VILSVVPEYYKHGKIHPATRTFQAIRIEVNKELESLKEALEKTPYHFNSKGRLVVITFHS 243

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK F   +  + +              F+ ITKK V P++E++  N  SRSAKLR
Sbjct: 244 LEDRIVKHFIKEKEKEGI--------------FRIITKKPVTPSEEEIRENPASRSAKLR 289

Query: 313 AGMRT 317
              + 
Sbjct: 290 VAEKI 294


>gi|319407511|emb|CBI81159.1| S-adenosyl-methyltransferase [Bartonella sp. 1-1C]
          Length = 349

 Score =  368 bits (945), Expect = e-100,   Method: Composition-based stats.
 Identities = 163/325 (50%), Positives = 209/325 (64%), Gaps = 3/325 (0%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQE 76
           +  H+PVLL+ V+A L P  G  ++D TFGAGGYS +    G+ VIALDRDP A+  GQ 
Sbjct: 25  VERHIPVLLQSVLAELAPLAGAKVIDGTFGAGGYSCALLNAGAEVIALDRDPHAIREGQA 84

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
            +  +  +  L QA FSQL   V +  VD V+ D+GVSSMQ+D  +RGFSFQK GPLDMR
Sbjct: 85  LVDQFFPRLRLVQAEFSQLDHIVEE-KVDAVILDIGVSSMQLDEPERGFSFQKDGPLDMR 143

Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
           M   G +A+DVVN     DL ++    GEE+ A RIA  I KRR   PF  T DL+  I+
Sbjct: 144 MGQIGFTAADVVNYLRADDLAQLFKTFGEERYAVRIARMIEKRRCIRPFLRTIDLAHAIE 203

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
             +     + IHPATR FQALRI+VNNE+ ELA GL +AE+ LKAGG L VVSFHSLEDR
Sbjct: 204 SLIGRKLGDHIHPATRVFQALRIYVNNELGELACGLFAAERVLKAGGRLAVVSFHSLEDR 263

Query: 257 LVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           +VKKFF++RSG     R++    + PA F  + K V  PTQE++  N R+RSA+LR G+R
Sbjct: 264 MVKKFFSARSGHKKGSRYLPEIKSAPATFIPLFKGVKTPTQEELQHNPRARSARLRMGVR 323

Query: 317 TVERSIEDDSFVHLPRLPTLSQFRG 341
           T E +I  D  + L  L  + +F G
Sbjct: 324 TQEVAIAAD--MKLFGLAEIVRFEG 346


>gi|229829369|ref|ZP_04455438.1| hypothetical protein GCWU000342_01458 [Shuttleworthia satelles DSM
           14600]
 gi|229792532|gb|EEP28646.1| hypothetical protein GCWU000342_01458 [Shuttleworthia satelles DSM
           14600]
          Length = 318

 Score =  368 bits (945), Expect = e-100,   Method: Composition-based stats.
 Identities = 104/315 (33%), Positives = 175/315 (55%), Gaps = 10/315 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            H  V+L + I  L      + +D T G  G+SR           +I +D+D  A++ G+
Sbjct: 4   KHYSVMLRETIDALAVKSDGIYVDGTMGGAGHSRQIASRLSGRGRLICIDQDADAIAAGK 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E ++D+ ++ ++ ++ + +++  + + G   V+G++ DLGVSS Q+D  +RGFS+   G 
Sbjct: 64  EKLKDFSDRVTIVRSNYERMRQILEELGIASVNGILLDLGVSSYQLDTPERGFSYMDEGA 123

Query: 133 L-DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           L DMRM C +  +A D+VN+ + ++L R++   GE++ A  IA  IV  RQ    +T  +
Sbjct: 124 LLDMRMDCRNPRTARDIVNEYSERELFRMIRNYGEDRFAKNIAKNIVLARQEKTIETVGE 183

Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I+++V    +    HPA R++QA+RI +N E++ L   +      L  GG   V+S
Sbjct: 184 LNEVIRRSVPRKIQVTGGHPAKRTYQAIRIELNRELDVLRDHIDEMIDLLADGGRFAVIS 243

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK  F +     +      +      +  + IT+K ++P +E++A N RSRS
Sbjct: 244 FHSLEDRIVKNAFQTAEDPCICPPEFPVCVCGRKSKGRVITRKPILPGKEELAENHRSRS 303

Query: 309 AKLRAGMRTVERSIE 323
           AKLR   R V R  E
Sbjct: 304 AKLRVFERRVVREEE 318


>gi|295692684|ref|YP_003601294.1| s-adenosyl-l-methionine-dependent methyltransferase mraw
           [Lactobacillus crispatus ST1]
 gi|295030790|emb|CBL50269.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Lactobacillus crispatus ST1]
          Length = 315

 Score =  368 bits (945), Expect = e-100,   Method: Composition-based stats.
 Identities = 106/311 (34%), Positives = 162/311 (52%), Gaps = 13/311 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76
            H  VLL + I  L P  G + +DATFG GG++R          ++  D+D +A+   + 
Sbjct: 4   KHTSVLLHETIDNLKPKNGGLYVDATFGGGGHARYLLSKIDTGTLVGFDQDEYAIKSAKL 63

Query: 77  TMR-----DYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSF 127
                   D + +  L    FS L+  +       G+DG+ +DLGVSS Q D  DRGFS+
Sbjct: 64  NFANLLQPDSEPRLELVHDNFSNLEKDLVKLGYSDGIDGIYYDLGVSSPQFDQADRGFSY 123

Query: 128 QKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           +    LDMRM  S  + A  +VN  + K+L  IL   G+EK + +IAH IV+RR+  P  
Sbjct: 124 RYDARLDMRMDQSQDLDAYQLVNTLSQKELADILYQYGDEKFSRQIAHRIVERRREKPIA 183

Query: 187 TTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           TT +L  +I+  +   ++    HPA +SFQALR+ VN+E++ L   L  A K L+ GG +
Sbjct: 184 TTFELVDVIKDAIPAYARRTGGHPAKKSFQALRVAVNHELDVLQASLEEAIKILRPGGRI 243

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
            V++F S ED++VK+ F   S   +        +      + +  K +V +  ++  N R
Sbjct: 244 SVITFQSHEDKIVKRIFKKYSEVEVPRGMPFIPDGMKPTLRLVNHKPIVASTSELENNNR 303

Query: 306 SRSAKLRAGMR 316
           S SAKLR   +
Sbjct: 304 SHSAKLRVAEK 314


>gi|281421043|ref|ZP_06252042.1| S-adenosyl-methyltransferase MraW [Prevotella copri DSM 18205]
 gi|281404961|gb|EFB35641.1| S-adenosyl-methyltransferase MraW [Prevotella copri DSM 18205]
          Length = 304

 Score =  368 bits (945), Expect = e-100,   Method: Composition-based stats.
 Identities = 114/304 (37%), Positives = 168/304 (55%), Gaps = 16/304 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HVPVLL++ +  LN  PG + +D TFG GG+SR        G+++ + D+D  A     E
Sbjct: 9   HVPVLLKESVDGLNIQPGGIYVDVTFGGGGHSREILSRLTEGAHLYSFDQDADA-----E 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQKSGPL 133
                 E F+   + F  L++++   GVDG+   + DLGVSS   D   RGFSF+   PL
Sbjct: 64  RNVVANENFTFVCSNFRFLKNWMRYYGVDGLDGLLADLGVSSHHFDDETRGFSFRFDSPL 123

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  +G +A+D+VN+ +   L  I  + GE K + RIA A+VK R   P  TT+D  
Sbjct: 124 DMRMNKRAGKTAADIVNEYDEGALADIFYLYGELKNSRRIASALVKARAEKPILTTKDFM 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           + ++    F +        + FQALRI VN+E++ L + LRSA   LK GG L V+++HS
Sbjct: 184 AAVEPL--FKREREKKDMAKLFQALRIEVNHEMDALKEMLRSATALLKPGGRLSVITYHS 241

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK    + + +    +        P  F+ +  KV+VP  ++   N RSRSAKLR
Sbjct: 242 LEDRIVKNMMKAGNAEGKIEQDFFGRIETP--FKLVNNKVIVPDADEQERNPRSRSAKLR 299

Query: 313 AGMR 316
              +
Sbjct: 300 IAEK 303


>gi|225871093|ref|YP_002747040.1| S-adenosyl-methyltransferase MraW [Streptococcus equi subsp. equi
           4047]
 gi|262826692|sp|C0M7A8|RSMH_STRE4 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|225700497|emb|CAW94939.1| S-adenosyl-methyltransferase MraW [Streptococcus equi subsp. equi
           4047]
          Length = 316

 Score =  368 bits (945), Expect = e-100,   Method: Composition-based stats.
 Identities = 104/320 (32%), Positives = 171/320 (53%), Gaps = 15/320 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           M++  H     HV VLL + + +L+  P  + +DAT G  G+S     +     ++   D
Sbjct: 1   MTNEFH-----HVTVLLHEAVDMLDIKPDGIYVDATLGGSGHSAYLLSLLGDKGHLYCFD 55

Query: 66  RDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120
           +D  A+   QE ++ Y  K Q +  +  F  L+  + + GV   DG+++DLGVSS Q+D 
Sbjct: 56  QDQKAIDHAQEQLKPYIDKGQVTFIKDNFRHLKARLLEHGVTEIDGILYDLGVSSPQLDE 115

Query: 121 GDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS+++  PLDMRM   + ++A +VVN  +  DL RI    GE+K + +IA  I + 
Sbjct: 116 RERGFSYKQDAPLDMRMDSQAALTAYEVVNTYDFNDLVRIFFKYGEDKFSKQIARKIEQA 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R   P  TT +L++LI+      +   + HPA + FQA+RI VN+E+      ++ A + 
Sbjct: 176 RAIKPISTTTELAALIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADASIQRAIEL 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L   G + V++FHSLEDRL K  F   S            +      + +++K ++P+Q+
Sbjct: 236 LALDGRISVITFHSLEDRLTKHLFKEASTADAPKGLPFIPDELKPKLELVSRKPILPSQK 295

Query: 299 DVAFNRRSRSAKLRAGMRTV 318
           ++  N R+ SAKLR   +  
Sbjct: 296 ELMANNRAHSAKLRVARKVR 315


>gi|300715300|ref|YP_003740103.1| S-adenosyl-methyltransferase MraW [Erwinia billingiae Eb661]
 gi|299061136|emb|CAX58243.1| S-adenosyl-methyltransferase MraW [Erwinia billingiae Eb661]
          Length = 313

 Score =  368 bits (945), Expect = e-100,   Method: Composition-based stats.
 Identities = 125/315 (39%), Positives = 172/315 (54%), Gaps = 15/315 (4%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAV 71
                H  VLL++ +  LN     + LD TFG GG+SR           + A+DRDP A+
Sbjct: 2   QDNFKHTTVLLDEAVNGLNIKSDGIYLDGTFGRGGHSRLILSQLGEHGRLYAIDRDPQAI 61

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSF 127
           +   E       +F +    FS L DY  + G    +DG++ DLGVSS Q+D  +RGFSF
Sbjct: 62  AAAAEI---TDPRFQIIHGPFSALADYADELGLTGKIDGILLDLGVSSPQLDDAERGFSF 118

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
            + GPLDMRM  + G SAS  + QA   D+  +L   GEE+ A RIA AIV+R +  P  
Sbjct: 119 MRDGPLDMRMDPTKGQSASQWLLQAEESDIAFVLKTFGEERFAKRIARAIVERNREQPMT 178

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
            T++L+ +I       K+   HPATRSFQA+RI+VN+E+EE+ Q L+ A  AL   G L 
Sbjct: 179 RTKELADVIYAATPV-KDKFKHPATRSFQAIRIWVNSELEEIEQALKGALTALAPEGRLS 237

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV---VVPTQEDVAFN 303
           V+SFHSLEDR+VK+F   +S        +  + A  A       K    ++P  E+V  N
Sbjct: 238 VISFHSLEDRIVKRFMREQSRGPQVPAGIPMTEAQLAKLGGRHLKAFGKMMPGDEEVKEN 297

Query: 304 RRSRSAKLRAGMRTV 318
            R+RS+ LR   RT 
Sbjct: 298 PRARSSVLRVAERTA 312


>gi|218687959|ref|YP_002396171.1| S-adenosyl-methyltransferase MraW [Escherichia coli ED1a]
 gi|263446439|sp|B7MNU1|RSMH_ECO81 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|218425523|emb|CAR06306.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Escherichia coli ED1a]
          Length = 313

 Score =  368 bits (945), Expect = e-100,   Method: Composition-based stats.
 Identities = 118/312 (37%), Positives = 178/312 (57%), Gaps = 19/312 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H  VLL++ +  LN  P    +D TFG GG+SR           ++A+DRDP A++  +
Sbjct: 6   KHTTVLLDEAVNGLNIRPDGTYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +FS+    FS L +YV ++     +DG++ DLGVSS Q+D  +RGFSF + G
Sbjct: 66  TI---DDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDG 122

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   T++
Sbjct: 123 PLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKE 182

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L ++SF
Sbjct: 183 LAEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISF 241

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305
           HSLEDR+VK+F    S        +  +            +++ K  ++P +E+VA N R
Sbjct: 242 HSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGK--LMPGEEEVAENPR 299

Query: 306 SRSAKLRAGMRT 317
           +RS+ LR   RT
Sbjct: 300 ARSSVLRIAERT 311


>gi|74310701|ref|YP_309120.1| S-adenosyl-methyltransferase MraW [Shigella sonnei Ss046]
 gi|88909219|sp|Q3Z5S7|RSMH_SHISS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|73854178|gb|AAZ86885.1| putative apolipoprotein [Shigella sonnei Ss046]
 gi|323165965|gb|EFZ51745.1| S-adenosyl-methyltransferase MraW [Shigella sonnei 53G]
          Length = 313

 Score =  367 bits (944), Expect = e-100,   Method: Composition-based stats.
 Identities = 118/312 (37%), Positives = 179/312 (57%), Gaps = 19/312 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++  +
Sbjct: 6   KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +FS+    FS L +YV ++     +DG++ DLGVSS Q+D  +RGFSF + G
Sbjct: 66  TI---DDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDG 122

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   T++
Sbjct: 123 PLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKE 182

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L ++SF
Sbjct: 183 LAEVVAVATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISF 241

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305
           HSLEDR+VK+F    S        +  +            +++ K  ++P +E+VA N R
Sbjct: 242 HSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGK--LMPGEEEVAENPR 299

Query: 306 SRSAKLRAGMRT 317
           +RS+ LR   RT
Sbjct: 300 ARSSVLRIAERT 311


>gi|254880783|ref|ZP_05253493.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 4_3_47FAA]
 gi|319639793|ref|ZP_07994523.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 3_1_40A]
 gi|254833576|gb|EET13885.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 4_3_47FAA]
 gi|317388610|gb|EFV69459.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 3_1_40A]
          Length = 304

 Score =  367 bits (944), Expect = e-100,   Method: Composition-based stats.
 Identities = 111/304 (36%), Positives = 168/304 (55%), Gaps = 16/304 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           HVPVLL + +  +N  PG + +DATFG GG+S+         +++ + D+D  A      
Sbjct: 9   HVPVLLNESVDGMNIQPGGIYVDATFGGGGHSKEILSRLDSTAHLYSFDQDEDAEKNIVS 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +F+  ++ F  L +++   GV   D ++ DLGVSS   D  +RGFSF+  G L
Sbjct: 69  -----DSRFTFVRSNFRYLPNFLRYYGVEGVDAILADLGVSSHHFDDSERGFSFRFEGKL 123

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  +G++A+DVVN  + + L  I  + GE K + ++A AIVK R      T  D  
Sbjct: 124 DMRMNKRAGMTAADVVNTYDEERLANIFYLYGELKNSRKLASAIVKARGVKQIVTIGDFL 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I+   +F +        + FQALRI VN E+E L + L +A KALK GG L+V+++HS
Sbjct: 184 EVIKP--FFGREREKKELAKVFQALRIEVNQEMEALKEMLYAATKALKPGGRLVVITYHS 241

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK    + + +  A +    +   P  F+ +  KV+V   E+V  N RSRSAKLR
Sbjct: 242 LEDRMVKNIMKTGNIEGKAEQDFFGNVQTP--FKLVNNKVIVAGNEEVTRNPRSRSAKLR 299

Query: 313 AGMR 316
              +
Sbjct: 300 IAEK 303


>gi|303327356|ref|ZP_07357797.1| S-adenosyl-methyltransferase MraW [Desulfovibrio sp. 3_1_syn3]
 gi|302862296|gb|EFL85229.1| S-adenosyl-methyltransferase MraW [Desulfovibrio sp. 3_1_syn3]
          Length = 328

 Score =  367 bits (944), Expect = e-99,   Method: Composition-based stats.
 Identities = 116/327 (35%), Positives = 171/327 (52%), Gaps = 10/327 (3%)

Query: 6   CKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIA 63
            + M          HVPVL  + +  L P  G   LD T G GG++ +      GS +  
Sbjct: 2   AQVMQDTEERASTRHVPVLPAETLEALAPRAGGRYLDGTLGMGGHAAAVLSAAPGSELCG 61

Query: 64  LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDC 120
           LDRD  A+   +  +  +  +   F   +S+  + + +     VDG + D+GVSS+Q+D 
Sbjct: 62  LDRDEQALDLARARLAPFGGRAHFFHCRYSRFAEALKELQWDKVDGALLDIGVSSLQLDE 121

Query: 121 GDRGFSFQKSGPLDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178
            +RGFSF   GPLDMRM      +SA   VN+ +   L   +  LGEE QA RIA  IV+
Sbjct: 122 NERGFSFYGDGPLDMRMDQHSGELSAWHWVNRESFARLKECIATLGEEPQAGRIARVIVE 181

Query: 179 RRQSAPFQTTQDLSSLIQKTVYFSKNNR--IHPATRSFQALRIFVNNEIEELAQGLRSAE 236
            RQ AP  +T +L++L++K    +   +   HPATR+FQALR+ VN+E+ EL + L    
Sbjct: 182 ARQKAPIDSTAELAALVEKAYPPAWRAKARRHPATRTFQALRMAVNDELGELRRFLDQIL 241

Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVP 295
             L  GG L V++FHSLEDR+VK+     +      RH  +    H    + + KK +  
Sbjct: 242 AWLPVGGRLAVITFHSLEDRMVKQAMRHWAEGCRCPRHVPVCVCRHQPEVRILHKKPLQA 301

Query: 296 TQEDVAFNRRSRSAKLRAGMRTVERSI 322
             E++A N R+ SAKLRA  +  E ++
Sbjct: 302 GSEELAVNPRAGSAKLRAVEKIAEAAV 328


>gi|15892780|ref|NP_360494.1| S-adenosyl-methyltransferase MraW [Rickettsia conorii str. Malish
           7]
 gi|20139037|sp|Q92HB4|RSMH_RICCN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|15619960|gb|AAL03395.1| unknown [Rickettsia conorii str. Malish 7]
          Length = 307

 Score =  367 bits (944), Expect = e-99,   Method: Composition-based stats.
 Identities = 129/307 (42%), Positives = 184/307 (59%), Gaps = 5/307 (1%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQ 75
           I  HV V+L +++  L+P  G+  LD TFGAGGYS++  +     V ALDRDP  +   +
Sbjct: 2   IQSHVSVMLNEMLEALSPKAGESYLDCTFGAGGYSKAILESCNCYVTALDRDPNVIKRAE 61

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           E  + Y E+F   +  F+     + +K  DG+V DLGVSSMQ+D  DRGFSF   GPLDM
Sbjct: 62  EIQQHYGERFDFVETNFADSFAKLKEKKFDGIVLDLGVSSMQLDIADRGFSFLHDGPLDM 121

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RMS  G+SA + VN A  K+L  ++   G+E  + RIA  IV+ R++A   +T  L+ ++
Sbjct: 122 RMSGQGLSAEEFVNAAEEKELADVIYKYGDESFSRRIAKRIVEYRKTARIDSTSKLAEIV 181

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           + ++ F K  +I PAT++FQA+RI+VN+E+ EL Q L + +  LK  G L+VVSFHSLED
Sbjct: 182 RSSIGFRK-GKIDPATKTFQAIRIYVNDELGELEQFLVNVKNILKKDGRLVVVSFHSLED 240

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNA---HPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           R+VK FF   S K +        +         + IT K + P+ ++V  N R+RSAKLR
Sbjct: 241 RIVKNFFKENSEKPVVRSKYAKDDMTIDPNKWLKIITNKALAPSDKEVGLNIRARSAKLR 300

Query: 313 AGMRTVE 319
           A     E
Sbjct: 301 AAKAIYE 307


>gi|332142432|ref|YP_004428170.1| 16S rRNA m(4)C1402 methyltranserfase [Alteromonas macleodii str.
           'Deep ecotype']
 gi|263446686|sp|B4RWY7|RSMH_ALTMD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|327552454|gb|AEA99172.1| 16S rRNA m(4)C1402 methyltranserfase [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 313

 Score =  367 bits (944), Expect = e-99,   Method: Composition-based stats.
 Identities = 121/308 (39%), Positives = 179/308 (58%), Gaps = 13/308 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H+ VLL++ I  L   P  + +DATFG GG+S            +IA DRDP A+    
Sbjct: 8   KHISVLLDECIEALAIKPNGIYIDATFGRGGHSAHILDALGEKGRLIAFDRDPQAIKAA- 66

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           E   D  ++FS+  + F  + + +   G    +DGV+ DLGVSS Q+D  +RGFSF + G
Sbjct: 67  ERFAD-DKRFSIIHSPFGDMAEEIEALGLTGKIDGVLMDLGVSSPQLDDAERGFSFLRDG 125

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  S G SA+D +  A  +D+T+++   GEEK   RIAHAIV  R+  P   T  
Sbjct: 126 PLDMRMDTSRGQSAADWLASAEEQDITQVIKEFGEEKFGKRIAHAIVNTRKDTPITRTAQ 185

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ +I + V   K+   HPATR+FQ +RI++N E+E+L  GL++A + L   G L V+SF
Sbjct: 186 LAKIIDEAVPV-KDKFKHPATRAFQGIRIYINAELEQLRVGLKAATQVLAKEGRLAVISF 244

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI--TKKVVVPTQEDVAFNRRSRS 308
           HSLEDRLVK+F   +S   +   ++  + A     + +    K + P+++++A N RSRS
Sbjct: 245 HSLEDRLVKRFIKDQSKGKVVPHNLPITQAEIDADKVLKALGKAIKPSEQEIANNVRSRS 304

Query: 309 AKLRAGMR 316
           + LR   +
Sbjct: 305 SVLRVAEK 312


>gi|326406411|gb|ADZ63482.1| S-adenosyl-methyltransferase MraW [Lactococcus lactis subsp. lactis
           CV56]
          Length = 317

 Score =  367 bits (944), Expect = e-99,   Method: Composition-based stats.
 Identities = 102/307 (33%), Positives = 164/307 (53%), Gaps = 9/307 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76
            H  VLL + + +L   P  + +DAT G  G+S          ++ + D+D  A    + 
Sbjct: 8   KHDTVLLHETVDMLEVKPNGIYVDATLGGAGHSEYLLSKLTNGHLYSFDQDETAHENAKV 67

Query: 77  TMRD--YKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            + +   +++ +L ++ F  L+  + + GV   DG+++DLGVSS Q D   RGFS++K  
Sbjct: 68  RLSEQLAEDKVTLIKSNFRYLKSALAELGVTKIDGILYDLGVSSPQFDDSQRGFSYKKEA 127

Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM  +  +SA +VVN    + L RI    GE+K + +IA  I + R+  P +TT +
Sbjct: 128 RLDMRMDQNQTLSAYEVVNDYPYETLVRIFFRYGEDKFSKQIARKIEQARKIKPIETTIE 187

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ LI+  +   +   + HPA R FQA+RI VN+E+    + +  A   LK  G + V++
Sbjct: 188 LADLIKSALPQKELKKKGHPAKRIFQAIRIEVNDELGAAEESIEQAIDLLKVDGRISVIT 247

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K  F   S   +     +      A  + I +K V+ ++E++ FN R+ SA
Sbjct: 248 FHSLEDRLTKTIFKEYSTVNVPKGLPMLPKDMEAKLKLINRKPVLASEEELEFNNRAHSA 307

Query: 310 KLRAGMR 316
           KLR   +
Sbjct: 308 KLRVAQK 314


>gi|261823024|ref|YP_003261130.1| S-adenosyl-methyltransferase MraW [Pectobacterium wasabiae WPP163]
 gi|261607037|gb|ACX89523.1| S-adenosyl-methyltransferase MraW [Pectobacterium wasabiae WPP163]
          Length = 314

 Score =  367 bits (944), Expect = e-99,   Method: Composition-based stats.
 Identities = 121/311 (38%), Positives = 181/311 (58%), Gaps = 18/311 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H  VLL++ +  LN   G   +D TFG GG+SR           ++A+DRDP A+   +
Sbjct: 6   KHTSVLLDEAVNGLNIRSGGTYIDGTFGRGGHSRLILSQLGPEGRLLAIDRDPQAIEAAK 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +FS+    FS + DYV ++G    +DGV+ DLGVSS Q+D  +RGFSF + G
Sbjct: 66  ---AIDDPRFSIIHGPFSAMADYVAERGLTGQIDGVLLDLGVSSPQLDDPERGFSFMRDG 122

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + G+SA++ + +A   D+  +L   GEE+ A RIA AIV+R ++ P   T++
Sbjct: 123 PLDMRMDPTRGLSAAEWLMKAEADDIVWVLKTFGEERFAKRIARAIVERNRTEPMTRTKE 182

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ LI       + ++ HPATRSFQA+RI++N+E+EE+ + L  A   L   G L V+SF
Sbjct: 183 LAELIAAASPVREKHK-HPATRSFQAIRIYINSELEEIERALEGALSVLAPQGRLSVISF 241

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNRR 305
           HSLEDR+VK+F   +S        +  + A          + + KK ++P++E+VA N R
Sbjct: 242 HSLEDRIVKRFIRHQSRGPQVPAGLPLTEAQLRSQGGQTLKPVGKK-LMPSEEEVAENPR 300

Query: 306 SRSAKLRAGMR 316
           +RS+ LR   R
Sbjct: 301 ARSSVLRFAER 311


>gi|260102637|ref|ZP_05752874.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Lactobacillus helveticus DSM 20075]
 gi|260083561|gb|EEW67681.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Lactobacillus helveticus DSM 20075]
          Length = 330

 Score =  367 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 104/311 (33%), Positives = 163/311 (52%), Gaps = 13/311 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76
            H  VLL + I  L P  G + +DATFG GG+++          ++  D+D +A+   + 
Sbjct: 19  KHTSVLLHETIDNLKPKNGGLYVDATFGGGGHAKYLLSKIETGTLVGFDQDEYAIKSAEL 78

Query: 77  TMRDY-----KEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSF 127
              D      + +  L    FS L+  +       G+DG+ +DLGVSS Q D  DRGFS+
Sbjct: 79  NFADLLQPDSEPRLKLVHDNFSNLEQDLVKLGYSDGIDGIYYDLGVSSPQFDQADRGFSY 138

Query: 128 QKSGPLDMRMSCSGIS-ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           + +  LDMRM  S  + A  +VN  + K+L  IL   G+EK + +IAH IV+RR+  P  
Sbjct: 139 RYNARLDMRMDQSQDTDAYQLVNTLSQKELADILYQYGDEKFSRQIAHRIVERRKDKPIV 198

Query: 187 TTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           TT +L  +I++ +   ++    HPA +SFQALR+ VN+E++ L   L  A + L+ GG +
Sbjct: 199 TTFELVDIIKEAIPAYARRTGGHPAKKSFQALRVAVNHELDVLQASLEEAIRILRPGGRI 258

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
            V++F S ED++VKK F   S   +        +      +   +K +  +  ++  N R
Sbjct: 259 SVITFQSHEDKIVKKIFKKYSEVEVPRGMPFVPDDMKPTLRLENRKPITASTSELENNNR 318

Query: 306 SRSAKLRAGMR 316
           S SAKLR   +
Sbjct: 319 SHSAKLRVAEK 329


>gi|163854037|ref|YP_001642080.1| S-adenosyl-methyltransferase MraW [Methylobacterium extorquens PA1]
 gi|263456431|sp|A9VW37|RSMH_METEP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|163665642|gb|ABY33009.1| S-adenosyl-methyltransferase MraW [Methylobacterium extorquens PA1]
          Length = 351

 Score =  367 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 148/326 (45%), Positives = 198/326 (60%), Gaps = 8/326 (2%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQ 75
             HVPVLL +V+A L+     + +D TFGAGGY+R+  + G    VIA+DRDP A+  G 
Sbjct: 18  ARHVPVLLAEVLAALSLDRPGLAVDGTFGAGGYTRALLEAGPEVRVIAIDRDPTAIRGGA 77

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + +     +  L Q  F  L   + D+     D VV D+GVSSMQID   RGFSF++ GP
Sbjct: 78  DLVTASGGRLRLVQGRFGDLDTLIADQDEPQADWVVLDIGVSSMQIDEAQRGFSFRQDGP 137

Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           LDMRM   G SA+D+VN      L  IL   GEE+++  +A AIV+ R+ AP +TT  L+
Sbjct: 138 LDMRMGGEGPSAADLVNGEEETTLADILYHFGEERRSRAVARAIVEARRRAPIETTAQLA 197

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            L+   V     + IHPATRSFQ LRI VN+E+ EL +GL +AE+ LK GG L VV+FHS
Sbjct: 198 DLVAGVVRPEPGSPIHPATRSFQGLRIAVNDELGELVRGLHAAERVLKPGGRLAVVTFHS 257

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRSAK 310
           LEDR+VK+FF++RSG+       +P    PA   F+ +TK  V+P++ +   N RSRSAK
Sbjct: 258 LEDRIVKQFFSARSGRAAQASRHVPGVERPAPKSFKLVTKGPVLPSEAETDVNPRSRSAK 317

Query: 311 LRAGMRTVERSIEDDSFVH-LPRLPT 335
           LRAG RT   +    S +  L  LP 
Sbjct: 318 LRAGERTDAPAPPPLSAIETLASLPA 343


>gi|295398679|ref|ZP_06808703.1| S-adenosyl-methyltransferase MraW [Aerococcus viridans ATCC 11563]
 gi|294973114|gb|EFG48917.1| S-adenosyl-methyltransferase MraW [Aerococcus viridans ATCC 11563]
          Length = 316

 Score =  367 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 102/320 (31%), Positives = 167/320 (52%), Gaps = 16/320 (5%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALD 65
           M++  H     H+ VLL + +  L   P  + +D T G  G+S            +IA D
Sbjct: 1   MANEFH-----HISVLLNESVDGLAIKPNGIYVDCTLGGAGHSSKIAAALSDEGRLIAFD 55

Query: 66  RDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDC 120
           +D  A+   ++ +       + +L    F  +Q  +   G   VDG+++DLGVSS Q+D 
Sbjct: 56  QDLVAIGNAEKVLAAEIESGKVTLVHNNFRHIQSELEKMGITGVDGILYDLGVSSPQLDE 115

Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS+ +  PLDMRM  +  ++A  ++N     DL RI    GEEK + +IA  I +R
Sbjct: 116 IERGFSYHQDAPLDMRMDQTQALTAETIINDWEYNDLVRIFYRYGEEKFSKQIARKIEQR 175

Query: 180 RQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R       T++L  ++++ +   ++    HPA R FQA+RI VN+E+  +   L  A   
Sbjct: 176 RADHRITRTEELVDIVKEAIPAPARRKGGHPAKRIFQAVRIAVNDELGAIEDSLEQALNL 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297
           L  GG +  +SF SLEDR+VK+ F   S G+ +     + +    A F+ + +K +  ++
Sbjct: 236 LNVGGRVSAISFQSLEDRIVKQMFKDASTGEELPANLPVINADIEAPFKLVNRKPIYASE 295

Query: 298 EDVAFNRRSRSAKLRAGMRT 317
           E++A+N R++SAKLR   R 
Sbjct: 296 EELAYNSRAQSAKLRIIERI 315


>gi|283798338|ref|ZP_06347491.1| S-adenosyl-methyltransferase MraW [Clostridium sp. M62/1]
 gi|291073921|gb|EFE11285.1| S-adenosyl-methyltransferase MraW [Clostridium sp. M62/1]
 gi|295092799|emb|CBK78906.1| S-adenosyl-methyltransferase MraW [Clostridium cf. saccharolyticum
           K10]
          Length = 317

 Score =  367 bits (943), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 100/307 (32%), Positives = 168/307 (54%), Gaps = 10/307 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VLL + +  LN  P  + +D T G GG++         G  +I LD+D  A++   E
Sbjct: 5   HTSVLLYETVDSLNIRPDGIYVDGTLGGGGHASLVLSRLGEGGRLIGLDQDADAIAAATE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS-GP 132
            ++ Y ++ ++ +  +  +++ +   G   VDG+  DLGVSS Q+D  +RGF++++   P
Sbjct: 65  RLKPYGDRVTVIRTNYENIKEALASLGIAKVDGIYLDLGVSSYQLDTAERGFTYREDDAP 124

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM      +A D+VN  +  +L RI+   GE++ A  IA  IVK RQ    +T  +L
Sbjct: 125 LDMRMDQRRSETAKDIVNGYSEMELYRIIRDYGEDRFAKNIAKHIVKARQEKEIETAGEL 184

Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           + +I+  +    +    HPA R+FQA+RI +N E++ L   + +  + L  GG L V++F
Sbjct: 185 TEIIRAAIPAKIRATGGHPAKRTFQAIRIELNRELQVLENSIDTMIELLNPGGRLSVITF 244

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  F              +      +  + +T+K ++P+ E+++ N+RS+SA
Sbjct: 245 HSLEDRIVKNRFRINENPCTCPPEFPVCMCGKKSRGRVVTRKPILPSDEELSANKRSKSA 304

Query: 310 KLRAGMR 316
           KLR   +
Sbjct: 305 KLRVFEK 311


>gi|150003970|ref|YP_001298714.1| S-adenosyl-methyltransferase MraW [Bacteroides vulgatus ATCC 8482]
 gi|294778005|ref|ZP_06743439.1| S-adenosyl-methyltransferase MraW [Bacteroides vulgatus PC510]
 gi|263445994|sp|A6L078|RSMH_BACV8 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|149932394|gb|ABR39092.1| S-adenosyl-methyltransferase MraW [Bacteroides vulgatus ATCC 8482]
 gi|294448063|gb|EFG16629.1| S-adenosyl-methyltransferase MraW [Bacteroides vulgatus PC510]
          Length = 304

 Score =  367 bits (943), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 111/304 (36%), Positives = 167/304 (54%), Gaps = 16/304 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           HVPVLL + +  +N  PG + +DATFG GG+S+         +++ + D+D  A      
Sbjct: 9   HVPVLLNESVDGMNIQPGGIYVDATFGGGGHSKEILSRLDSTAHLYSFDQDEDAEKNIVS 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +F+  ++ F  L +++   GV   D ++ DLGVSS   D  +RGFSF+  G L
Sbjct: 69  -----DSRFTFVRSNFRYLPNFLRYYGVEGVDAILADLGVSSHHFDDSERGFSFRFEGKL 123

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  +G++A+DVVN  + + L  I  + GE K + ++A AIVK R      T  D  
Sbjct: 124 DMRMNKRAGMTAADVVNTYDEERLANIFYLYGELKNSRKLASAIVKARGVKQIVTIGDFL 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I+    F +        + FQALRI VN E+E L + L +A KALK GG L+V+++HS
Sbjct: 184 EVIKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLYAATKALKPGGRLVVITYHS 241

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK    + + +  A +    +   P  F+ +  KV+V   E+V  N RSRSAKLR
Sbjct: 242 LEDRMVKNIMKTGNIEGKAEQDFFGNVQTP--FKLVNNKVIVAGNEEVTRNPRSRSAKLR 299

Query: 313 AGMR 316
              +
Sbjct: 300 IAEK 303


>gi|295688554|ref|YP_003592247.1| S-adenosyl-methyltransferase MraW [Caulobacter segnis ATCC 21756]
 gi|295430457|gb|ADG09629.1| S-adenosyl-methyltransferase MraW [Caulobacter segnis ATCC 21756]
          Length = 311

 Score =  367 bits (943), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 141/313 (45%), Positives = 199/313 (63%), Gaps = 5/313 (1%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQ 75
           +   H+ VLL++V+  L   PG V++D TFGAGGY+R+    G++VI  DRDP      +
Sbjct: 2   SAAPHISVLLDEVVEALGAGPGDVVVDGTFGAGGYTRAVLATGASVIGFDRDPTVQRFTE 61

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
                  ++F L QA FS++ D +  + VDGV+ DLGVSSMQ+D  +RGFSF + GPLDM
Sbjct: 62  GL---PADRFRLIQARFSEMLDELGPESVDGVMLDLGVSSMQLDQAERGFSFMRDGPLDM 118

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RM  +G +A+D+VN  +  +L RIL + GEE  + RIA  I++RR+  PF+ T DL+ +I
Sbjct: 119 RMGDTGPTAADLVNTLDHAELARILYVYGEEHASRRIASFILRRREERPFERTLDLAEVI 178

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           ++ V   K  ++HPATRSFQ LRI VN+E+ EL  GL +AE+ LK GG L+VV+FHSLED
Sbjct: 179 ERAVGGRKGAKVHPATRSFQGLRIAVNDELGELEAGLAAAERVLKPGGRLVVVTFHSLED 238

Query: 256 RLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           R+VK F A R+G+        P         FQ I+ K + P + ++A N R+RS+KLRA
Sbjct: 239 RIVKAFLAERAGRTPGGSRHAPPVQAGAQPSFQLISNKAIAPGEAELAANPRARSSKLRA 298

Query: 314 GMRTVERSIEDDS 326
            +RT     E  +
Sbjct: 299 AVRTEAPVWEAAA 311


>gi|227877318|ref|ZP_03995391.1| S-adenosyl-methyltransferase [Lactobacillus crispatus JV-V01]
 gi|256842880|ref|ZP_05548368.1| methylase MraW [Lactobacillus crispatus 125-2-CHN]
 gi|256848746|ref|ZP_05554180.1| cell division protein MraW [Lactobacillus crispatus MV-1A-US]
 gi|262045846|ref|ZP_06018810.1| methylase MraW [Lactobacillus crispatus MV-3A-US]
 gi|312977602|ref|ZP_07789349.1| S-adenosyl-methyltransferase MraW [Lactobacillus crispatus CTV-05]
 gi|227863174|gb|EEJ70620.1| S-adenosyl-methyltransferase [Lactobacillus crispatus JV-V01]
 gi|256614300|gb|EEU19501.1| methylase MraW [Lactobacillus crispatus 125-2-CHN]
 gi|256714285|gb|EEU29272.1| cell division protein MraW [Lactobacillus crispatus MV-1A-US]
 gi|260573805|gb|EEX30361.1| methylase MraW [Lactobacillus crispatus MV-3A-US]
 gi|310895341|gb|EFQ44408.1| S-adenosyl-methyltransferase MraW [Lactobacillus crispatus CTV-05]
          Length = 315

 Score =  367 bits (943), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 105/311 (33%), Positives = 162/311 (52%), Gaps = 13/311 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76
            H  VLL + I  L P  G + +DATFG GG+++          ++  D+D +A+   + 
Sbjct: 4   KHTSVLLHETIDNLKPKNGGLYVDATFGGGGHAKYLLSKIDTGTLVGFDQDEYAIKSAKL 63

Query: 77  TMR-----DYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSF 127
                   D + +  L    FS L+  +       G+DG+ +DLGVSS Q D  DRGFS+
Sbjct: 64  NFANLLQLDSEPRLELVHDNFSNLEKDLVKLGYSDGIDGIYYDLGVSSPQFDQADRGFSY 123

Query: 128 QKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           +    LDMRM  S  + A  +VN  + K+L  IL   G+EK + +IAH IV+RR+  P  
Sbjct: 124 RYDARLDMRMDQSQDLDAYQLVNTLSQKELADILYQYGDEKFSRQIAHRIVERRREKPIA 183

Query: 187 TTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           TT +L  +I+  +   ++    HPA +SFQALR+ VN+E++ L   L  A K L+ GG +
Sbjct: 184 TTFELVDVIKDAIPAYARRTGGHPAKKSFQALRVAVNHELDVLQASLEEAIKILRPGGRI 243

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
            V++F S ED++VK+ F   S   +        +      + +  K +V +  ++  N R
Sbjct: 244 SVITFQSHEDKIVKRIFKKYSEVEVPRGMPFIPDGMKPTLRLVNHKPIVASTSELENNNR 303

Query: 306 SRSAKLRAGMR 316
           S SAKLR   +
Sbjct: 304 SHSAKLRVAEK 314


>gi|323692152|ref|ZP_08106395.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Clostridium symbiosum WAL-14673]
 gi|323503726|gb|EGB19545.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Clostridium symbiosum WAL-14673]
          Length = 314

 Score =  367 bits (943), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 98/312 (31%), Positives = 174/312 (55%), Gaps = 10/312 (3%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSC 73
           I  H  VLL++ I  L+  P  + +D T G GG++   C+        I +D+D  A++ 
Sbjct: 2   IFGHKSVLLDETIESLDIKPDGIYVDGTLGGGGHASEVCRRLGDKGRFIGIDQDADAIAA 61

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
             E ++++ ++ ++ ++ +  + + + + G   VDG+  DLGVSS Q+D  +RGF++++ 
Sbjct: 62  ASERLKEFGDKVTIVRSNYENVDEVLKELGISQVDGIYLDLGVSSYQLDTAERGFTYRED 121

Query: 131 -GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM   + ++A D+VN  +  +L  I+   GE++ A  IA  IV+ RQ    +TT
Sbjct: 122 DAPLDMRMDQRNEMTAKDIVNTYSESELFHIIKNYGEDRFAKNIAKHIVRARQEKEIETT 181

Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L  +I+  +    +    HPA R+FQA+RI +N E+E L + +      L  GG L +
Sbjct: 182 GELIEIIKAAIPAKVRATGGHPAKRTFQAIRIELNKELEVLEKSIDKMTDLLAPGGRLSI 241

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           ++FHSLEDR+VK  F              +      +  + +T+K ++P++E+++ N+RS
Sbjct: 242 ITFHSLEDRIVKNRFRINENPCTCPPDFPVCMCGKKSKGRVVTRKPILPSEEELSENKRS 301

Query: 307 RSAKLRAGMRTV 318
           +SAKLR   ++ 
Sbjct: 302 KSAKLRVFEKSR 313


>gi|323171245|gb|EFZ56893.1| S-adenosyl-methyltransferase MraW [Escherichia coli LT-68]
          Length = 313

 Score =  367 bits (943), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 117/312 (37%), Positives = 179/312 (57%), Gaps = 19/312 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++  +
Sbjct: 6   KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +FS+    FS L +YV ++     +DG++ DLGVSS Q+D  +RGFSF + G
Sbjct: 66  TI---DDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDG 122

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   T++
Sbjct: 123 PLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKE 182

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L ++SF
Sbjct: 183 LAEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISF 241

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305
           HSLEDR+VK+F    S        +  +            +++ K  ++P +E++A N R
Sbjct: 242 HSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGK--LMPGEEEMAENPR 299

Query: 306 SRSAKLRAGMRT 317
           +RS+ LR   RT
Sbjct: 300 ARSSVLRIAERT 311


>gi|312898967|ref|ZP_07758355.1| S-adenosyl-methyltransferase MraW [Megasphaera micronuciformis
           F0359]
 gi|310620129|gb|EFQ03701.1| S-adenosyl-methyltransferase MraW [Megasphaera micronuciformis
           F0359]
          Length = 310

 Score =  367 bits (943), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 118/307 (38%), Positives = 173/307 (56%), Gaps = 8/307 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQ 75
            HV VL E+ I  +   P  + +D T G GG+SR+          +I LD+D  A+    
Sbjct: 4   HHVSVLREETIHAVLGDPAGIYVDCTLGGGGHSRALADLLVKDGLIIGLDQDEDAIRAAT 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E M+D   +F+  Q  F  L + + D     VDG++FDLGVSS Q+D  +RGFS+Q  GP
Sbjct: 64  ERMQDAPCRFTAVQRNFRYLGEVLDDLNIPTVDGIMFDLGVSSYQLDNPERGFSYQHDGP 123

Query: 133 LDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM   G  SA DV+N  +  DL RI+   GEE+ A RIA  IVK R+  PF+ T++L
Sbjct: 124 LDMRMDRHGKKSAYDVINAYDEADLYRIIKDYGEERWAKRIASFIVKARREKPFERTEEL 183

Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I++ +   ++ +  HPA R+FQA+RI VN+E++ L      A   LK GG + +++F
Sbjct: 184 VRVIKQAIPAGARKDGPHPAKRTFQAVRIEVNDELKILQDTFEIAANRLKPGGHIGIITF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDR+ K+     +   +   H+     H      +  K + P++E++  N R+RSAK
Sbjct: 244 HSLEDRIAKQTLRKLATGCICPPHIPVCTCHHEAILKVKGKGIGPSKEELELNPRARSAK 303

Query: 311 LRAGMRT 317
           LR G R 
Sbjct: 304 LRVGTRI 310


>gi|319899165|ref|YP_004159258.1| S-adenosyl-methyltransferase [Bartonella clarridgeiae 73]
 gi|319403129|emb|CBI76687.1| S-adenosyl-methyltransferase [Bartonella clarridgeiae 73]
          Length = 346

 Score =  367 bits (943), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 162/325 (49%), Positives = 212/325 (65%), Gaps = 3/325 (0%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQE 76
           +  H+PVLL+ V+A + P  G  ++D TFGAGGYSR+    G+ VIALDRDP A+  GQ 
Sbjct: 22  VERHIPVLLQSVLAGIAPLAGARVIDGTFGAGGYSRALLNAGAEVIALDRDPLAIREGQA 81

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
            +  +  +  L QA FSQL   V +  VD V+ D+GVSSMQ+D  +RGFSFQK GPLDMR
Sbjct: 82  LVDQFFPRLHLIQAKFSQLDRIV-EGEVDAVILDIGVSSMQLDEAERGFSFQKDGPLDMR 140

Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
           M+ +G +A+DVVN   V DL ++   LGEE+ A RIA  I KRR   PF  T DL+  I+
Sbjct: 141 MAQTGFTAADVVNYLKVDDLAQLFKTLGEERYAGRIARMIDKRRYVRPFLRTIDLAHAIE 200

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
             +     + IHPATR FQALRI+VNNE+ ELA GL +AE+ LKA G L VVSFHSLEDR
Sbjct: 201 TLIGRKPGDHIHPATRVFQALRIYVNNELGELACGLFAAERVLKAEGRLAVVSFHSLEDR 260

Query: 257 LVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           +VKKF ++RSG     R++    + PA F  + K V   TQE++  N R+RSA+LR G+R
Sbjct: 261 MVKKFLSARSGYKKGSRYLPEIKSVPATFVPLFKGVKTATQEELQQNPRARSARLRIGVR 320

Query: 317 TVERSIEDDSFVHLPRLPTLSQFRG 341
           T E +I  D  + L  L  +++F G
Sbjct: 321 TQEAAIAAD--MKLFGLAEIARFEG 343


>gi|229586901|ref|YP_002845402.1| S-adenosyl-methyltransferase MraW [Rickettsia africae ESF-5]
 gi|259495903|sp|C3PNZ9|RSMH_RICAE RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|228021951|gb|ACP53659.1| S-adenosyl-methyltransferase MraW [Rickettsia africae ESF-5]
          Length = 307

 Score =  367 bits (943), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 129/307 (42%), Positives = 185/307 (60%), Gaps = 5/307 (1%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQ 75
           I  HV V+L +++  L+P  G+  LD TFGAGGYS++  +     V ALDRDP  +   +
Sbjct: 2   IQSHVSVMLNEMLEALSPKAGESYLDCTFGAGGYSKAILESCNCYVTALDRDPNVIKRAE 61

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           E  + Y E+F   +  F+     + +K  DG+V DLGVSSMQ+D  DRGFSF  +GPLDM
Sbjct: 62  EIQQSYGERFDFVETNFADSFAKLKEKKFDGIVLDLGVSSMQLDIADRGFSFLHNGPLDM 121

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RMS  G+SA + VN A  K+L  ++   G+E  + RIA  IV+ R++A   +T  L+ ++
Sbjct: 122 RMSGQGLSAEEFVNAAEEKELADVIYKYGDESFSRRIAKRIVEYRKTARIDSTSKLAEIV 181

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           + ++ F K  +I PAT++FQA+RI+VN+E+ EL Q L + +  LK  G L+VVSFHSLED
Sbjct: 182 RSSIGFRK-GKIDPATKTFQAIRIYVNDELGELEQFLVNVKNILKKDGRLVVVSFHSLED 240

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNA---HPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           R+VK FF   S K +        +         + IT K + P+ ++V  N R+RSAKLR
Sbjct: 241 RIVKNFFKENSEKPVVRSKYAKDDMTIDPNKWLKIITNKALAPSDKEVGLNIRARSAKLR 300

Query: 313 AGMRTVE 319
           A     E
Sbjct: 301 AAKAIYE 307


>gi|281491359|ref|YP_003353339.1| S-adenosyl-methyltransferase MraW [Lactococcus lactis subsp. lactis
           KF147]
 gi|281375100|gb|ADA64618.1| S-adenosyl-methyltransferase MraW [Lactococcus lactis subsp. lactis
           KF147]
          Length = 317

 Score =  367 bits (943), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 102/307 (33%), Positives = 165/307 (53%), Gaps = 9/307 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76
            H  VLL + + +L   P  + +DAT G  G+S          ++ + D+D  A    + 
Sbjct: 8   KHDTVLLHETVDMLEVKPNGIYVDATLGGAGHSEYLLSKLTDGHLYSFDQDETAHENAKV 67

Query: 77  TMRD--YKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            + +   +++ +L ++ F  L+  + + GV   DG+++DLGVSS Q D   RGFS++K  
Sbjct: 68  RLSEQLAEDKVTLIKSNFRYLKSALAELGVTKIDGILYDLGVSSPQFDDSQRGFSYKKEA 127

Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM  +  +SA +VVN+   + L RI    GE+K + +IA  I + R+  P +TT +
Sbjct: 128 RLDMRMDQNQTLSAYEVVNEYPYEALVRIFFRYGEDKFSKQIARKIEQARKIKPIETTIE 187

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ LI+  +   +   + HPA R FQA+RI VN+E+    + +  A   LK  G + V++
Sbjct: 188 LADLIKSALPQKELKKKGHPAKRIFQAIRIEVNDELGAAEESIEQAIDLLKVDGRISVIT 247

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K  F   S   +     +      A  + I +K V+ ++E++ FN R+ SA
Sbjct: 248 FHSLEDRLTKTIFKEYSTVNVPKGLPMLPKDMEAKLKLINRKPVLASEEELEFNNRAHSA 307

Query: 310 KLRAGMR 316
           KLR   +
Sbjct: 308 KLRVAQK 314


>gi|84501746|ref|ZP_00999918.1| S-adenosyl-methyltransferase MraW [Oceanicola batsensis HTCC2597]
 gi|84390367|gb|EAQ02926.1| S-adenosyl-methyltransferase MraW [Oceanicola batsensis HTCC2597]
          Length = 331

 Score =  367 bits (943), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 138/326 (42%), Positives = 195/326 (59%), Gaps = 5/326 (1%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRD 67
           M+++       H+PVLL  +I  + P      LD TFGAGGY+R   + G+  VI +DRD
Sbjct: 1   MAASAPSPDAPHIPVLLRPLIDRVAPVA-GTWLDGTFGAGGYARGLLEAGAEKVIGVDRD 59

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
           P A+      + D   +  + Q  F++L     +  +DGVV DLGVSSMQ+D  +RGFSF
Sbjct: 60  PLALEMAGGWIGDCAGKLEIRQGNFAELDRIAGEM-LDGVVLDLGVSSMQLDLAERGFSF 118

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
            K GPLDMRMS  G SA+D+VN     DL  ++ + GEE+ + RIA AIV+ R  AP  T
Sbjct: 119 MKDGPLDMRMSQEGPSAADLVNTMAEGDLADVIYLYGEERASRRIARAIVRERAEAPIAT 178

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T  L+ +++  +  +K  + HPATR+FQALRI VN+E   LA+GL +AE+AL+ GG L V
Sbjct: 179 TLRLAGIVEGCLPRAKPGQSHPATRTFQALRIAVNDEYGALAEGLMAAERALRPGGQLAV 238

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPS-NAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+FHS+EDR+VK+F   RSG+        P        F  +T+K V P ++++  N R+
Sbjct: 239 VTFHSVEDRMVKRFLQLRSGRAGRANRFAPEAPEDKPRFTIVTRKAVGPDEDELEVNPRA 298

Query: 307 RSAKLRAGMRTVERSIE-DDSFVHLP 331
           RSA+LR   RT E +   D   + +P
Sbjct: 299 RSARLRVARRTEEPAEPIDRKALGMP 324


>gi|15672847|ref|NP_267021.1| hypothetical protein L87561 [Lactococcus lactis subsp. lactis
           Il1403]
 gi|20139138|sp|Q9CH73|RSMH_LACLA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|12723794|gb|AAK04963.1|AE006321_1 hypothetical protein L87561 [Lactococcus lactis subsp. lactis
           Il1403]
          Length = 317

 Score =  367 bits (943), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 102/307 (33%), Positives = 164/307 (53%), Gaps = 9/307 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76
            H  VLL + + +L   P  + +DAT G  G+S          ++ + D+D  A    + 
Sbjct: 8   KHDTVLLHETVDMLEVKPNGIYVDATLGGAGHSEYLLSKLTNGHLYSFDQDETAHENAKV 67

Query: 77  TMRD--YKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            + +   +++ +L ++ F  L+  + + GV   DG+++DLGVSS Q D   RGFS++K  
Sbjct: 68  RLSEQLAEDKVTLIKSNFRYLKSALAELGVTKIDGILYDLGVSSPQFDDSQRGFSYKKEA 127

Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM  +  +SA +VVN    + L RI    GE+K + +IA  I + R+  P +TT +
Sbjct: 128 RLDMRMDQNQTLSAYEVVNDYPYEALVRIFFRYGEDKFSKQIARKIEQARKIKPIETTIE 187

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ LI+  +   +   + HPA R FQA+RI VN+E+    + +  A   LK  G + V++
Sbjct: 188 LADLIKSALPQKELKKKGHPAKRIFQAIRIEVNDELGAAEESIEQAIDLLKVDGRISVIT 247

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K  F   S   +     +      A  + I +K V+ ++E++ FN R+ SA
Sbjct: 248 FHSLEDRLTKTIFKEYSTVNVPKGLPMLPKDMEAKLKLINRKPVLASEEELEFNNRAHSA 307

Query: 310 KLRAGMR 316
           KLR   +
Sbjct: 308 KLRVAQK 314


>gi|254564005|ref|YP_003071100.1| S-adenosyl-dependent methyltransferase [Methylobacterium extorquens
           DM4]
 gi|254271283|emb|CAX27295.1| S-adenosyl-dependent methyltransferase [Methylobacterium extorquens
           DM4]
          Length = 351

 Score =  367 bits (943), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 148/326 (45%), Positives = 198/326 (60%), Gaps = 8/326 (2%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQ 75
             HVPVLL +V+A L+     + +D TFGAGGY+R+  + G    VIA+DRDP A+  G 
Sbjct: 18  ARHVPVLLAEVLAALSLDRPGLAVDGTFGAGGYTRALLEAGPEVRVIAIDRDPTAIRGGA 77

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + +     +  L Q  F  L   + D+     D VV D+GVSSMQID   RGFSF++ GP
Sbjct: 78  DLVTASGGRLRLVQGRFGDLDTLIADQDEAQADWVVLDIGVSSMQIDEAQRGFSFRQDGP 137

Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           LDMRM   G SA+D+VN      L  IL   GEE+++  +A AIV+ R+ AP +TT  L+
Sbjct: 138 LDMRMGGEGPSAADLVNGEEETTLADILYHFGEERRSRAVARAIVEARRRAPIETTAQLA 197

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            L+   V     + IHPATRSFQ LRI VN+E+ EL +GL +AE+ LK GG L VV+FHS
Sbjct: 198 DLVAGVVRPEPGSPIHPATRSFQGLRIAVNDELGELVRGLHAAERVLKPGGRLAVVTFHS 257

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRSAK 310
           LEDR+VK+FF++RSG+       +P    PA   F+ +TK  V+P++ +   N RSRSAK
Sbjct: 258 LEDRIVKQFFSARSGRAAQASRHVPGVERPAPKSFKLVTKGPVLPSEAETDVNPRSRSAK 317

Query: 311 LRAGMRTVERSIEDDSFVH-LPRLPT 335
           LRAG RT   +    S +  L  LP 
Sbjct: 318 LRAGERTDAPAPPPLSAIETLASLPA 343


>gi|313673691|ref|YP_004051802.1| s-adenosyl-methyltransferase mraw [Calditerrivibrio nitroreducens
           DSM 19672]
 gi|312940447|gb|ADR19639.1| S-adenosyl-methyltransferase MraW [Calditerrivibrio nitroreducens
           DSM 19672]
          Length = 312

 Score =  367 bits (943), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 120/311 (38%), Positives = 171/311 (54%), Gaps = 8/311 (2%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAV 71
           H     H+PVLLE+ +  LN   G V +D T G GG+S +  +      +I LDRDP A 
Sbjct: 3   HKVEMAHIPVLLEEALHYLNVISGGVYVDCTGGGGGHSAAILEKINEGRLIILDRDPDAC 62

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV--DGVVFDLGVSSMQIDCGDRGFSFQK 129
                  +       +    FS ++  +   G+  +G++ D GVSS QI    RGFSF+ 
Sbjct: 63  ERLFIRFKGV-PNVDIINDNFSNIEKILDSMGLKANGILADFGVSSFQISNTGRGFSFRY 121

Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM   + +SA DVVN  + + L  I+   GE+  A RIA+ IVK R      TT
Sbjct: 122 DEPLDMRMDKKTDLSAYDVVNNLSQETLENIIKKYGEDPFAKRIAYVIVKYRNLKKITTT 181

Query: 189 QDLSSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           ++L+ +I   V    + + IHPATR+FQA+RIFVN E+E +   L+S E  L + G  + 
Sbjct: 182 KELAEIIANAVPVKFHKKGIHPATRTFQAIRIFVNKELEAIESLLKSLENILVSKGRGVF 241

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           +SFHSLEDR+VK F    + + +      I +      F+ +TKK V+P++++V  N  S
Sbjct: 242 ISFHSLEDRMVKDFLNYYAKQCICPPGQPICTCGKKQTFKVLTKKPVLPSKDEVIKNPYS 301

Query: 307 RSAKLRAGMRT 317
           RSAKLRAG R 
Sbjct: 302 RSAKLRAGERV 312


>gi|218780979|ref|YP_002432297.1| S-adenosyl-methyltransferase MraW [Desulfatibacillum alkenivorans
           AK-01]
 gi|263447357|sp|B8FBS6|RSMH_DESAA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|218762363|gb|ACL04829.1| S-adenosyl-methyltransferase MraW [Desulfatibacillum alkenivorans
           AK-01]
          Length = 326

 Score =  367 bits (943), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 127/309 (41%), Positives = 178/309 (57%), Gaps = 10/309 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
            HV V+ ++V++LL+PAPG V++D TFG GG++R+  +       +I  D D  AV+  Q
Sbjct: 4   HHVSVMKQEVLSLLSPAPGHVVVDGTFGGGGHARAILERILPDGLLIGTDLDEDAVTNAQ 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
               D +  F +F   FS ++  +   G+   +G+V DLGVS   ++   RGFSFQ+  P
Sbjct: 64  ACFADVQNNFRIFHDNFSNIRAVLDQCGLAGANGIVLDLGVSLHLLEKSGRGFSFQREEP 123

Query: 133 LDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           LDMRM  SG    A DVVN  +  +L RI    GEE+QA RIA  IV+RR+  P  T+  
Sbjct: 124 LDMRMDGSGGGPKAMDVVNAYSQDELARIFLEYGEERQAKRIARRIVQRREDEPITTSGR 183

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ ++   V   K  RIHPATR FQALRI VNNE+  L + L +    L  GG L ++SF
Sbjct: 184 LADIVASAVK-GKPGRIHPATRVFQALRIHVNNELAHLEKFLETCLDCLLPGGRLCIISF 242

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK+ FA+ +          +    +    + +TKKVV P+Q +V  N  SRSA
Sbjct: 243 HSLEDRIVKRRFAALAQGCTCPPDFPVCICGNQPKVKILTKKVVKPSQAEVEKNPMSRSA 302

Query: 310 KLRAGMRTV 318
           K+RA  +  
Sbjct: 303 KIRAMEKLA 311


>gi|110804146|ref|YP_687666.1| S-adenosyl-methyltransferase MraW [Shigella flexneri 5 str. 8401]
 gi|123147294|sp|Q0T8B5|RSMH_SHIF8 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|110613694|gb|ABF02361.1| putative apolipoprotein [Shigella flexneri 5 str. 8401]
          Length = 313

 Score =  367 bits (942), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 117/312 (37%), Positives = 178/312 (57%), Gaps = 19/312 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++  +
Sbjct: 6   KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +FS+    FS L +YV ++     +DG++ DLGVSS Q+D  +RGFSF + G
Sbjct: 66  TI---DDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDG 122

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + G SA++ +  A   D+  +L   GEE  A RIA AIV+R +  P   T++
Sbjct: 123 PLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEEHFAKRIARAIVERNREQPMTRTKE 182

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L ++SF
Sbjct: 183 LAEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISF 241

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305
           HSLEDR+VK+F    S        +  +            +++ K  ++P +++VA N R
Sbjct: 242 HSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGK--LMPGEDEVAENPR 299

Query: 306 SRSAKLRAGMRT 317
           +RS+ LR   RT
Sbjct: 300 ARSSVLRIAERT 311


>gi|322513875|ref|ZP_08066954.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Actinobacillus ureae ATCC 25976]
 gi|322120274|gb|EFX92221.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Actinobacillus ureae ATCC 25976]
          Length = 313

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 116/316 (36%), Positives = 172/316 (54%), Gaps = 16/316 (5%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69
           ++ T   H+ VLL + +  L   P  + +D TFG GG+SR           +IA DRDP 
Sbjct: 1   MNDTAHKHITVLLHEAVDGLAIKPNGIYIDGTFGRGGHSRLILSKLSERGRLIATDRDPS 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGF 125
           A++           +F +    FS + +     G    +DG++ DLGVSS Q+D  +RGF
Sbjct: 61  AIAEANTI---TDARFQIVHTAFSAIPEVCEQLGLTGKIDGILLDLGVSSPQLDDAERGF 117

Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA- 183
           SF + G LDMRM  + G+SA++ + Q +V DL  +L   GEE+ A RIA A+    +S  
Sbjct: 118 SFMRDGSLDMRMDTTKGLSAAEWLAQVSVDDLAWVLKTFGEERFAKRIAQAVFSYNKSTT 177

Query: 184 -PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
                T  L+ +I   V F K+   HPATRSFQA+RIF+N+E++EL + L+SA   L   
Sbjct: 178 DKISRTLQLAQIIADAVPF-KDKHKHPATRSFQAIRIFINSELDELEKALQSALSVLAPE 236

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300
           G L ++SFHSLEDR+VK+F    S    V     ++ S  +  +      K ++P++ ++
Sbjct: 237 GRLSIISFHSLEDRMVKQFMKKNSKGMDVPKGLPILESELNKNIPLKTIGKAIMPSEAEI 296

Query: 301 AFNRRSRSAKLRAGMR 316
             N RSRSA LR   +
Sbjct: 297 EANPRSRSAVLRIAEK 312


>gi|320084363|emb|CBY94156.1| putative S-adenosyl methionine adenyltransferase [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
          Length = 346

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 120/312 (38%), Positives = 181/312 (58%), Gaps = 19/312 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++  Q
Sbjct: 39  KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAQ 98

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +FS+    FS L DYV ++     +DG++ DLGVSS Q+D  +RGFSF + G
Sbjct: 99  TI---NDPRFSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFMRDG 155

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   T++
Sbjct: 156 PLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIARAIVERNREQPMTRTKE 215

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L ++SF
Sbjct: 216 LAEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSIISF 274

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305
           HSLEDR+VK+F   +S        +  + A          +++ K  ++P +++VA N R
Sbjct: 275 HSLEDRIVKRFMREQSRGPQVPAGLPMTEAQLKKLGGRELRALGK--LMPGEKEVAENPR 332

Query: 306 SRSAKLRAGMRT 317
           +RS+ LR   RT
Sbjct: 333 ARSSVLRIAERT 344


>gi|85703617|ref|ZP_01034721.1| S-adenosyl-methyltransferase MraW [Roseovarius sp. 217]
 gi|85672545|gb|EAQ27402.1| S-adenosyl-methyltransferase MraW [Roseovarius sp. 217]
          Length = 330

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 139/321 (43%), Positives = 201/321 (62%), Gaps = 6/321 (1%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCG 74
               H+PVLL  ++A + P    V LD T GAGGY+R   + G++ V+ +DRDP A+   
Sbjct: 9   NTAPHIPVLLRPLLAAVAPVR-GVWLDGTLGAGGYARGLLEAGADQVVGVDRDPLALEMA 67

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +E   +Y ++  L Q  F+Q+ DY  D  +DGVV DLGVSSMQ+D  +RGFSF + GPLD
Sbjct: 68  REWGAEYGDRLRLVQGNFAQMDDYAAD--LDGVVLDLGVSSMQLDRAERGFSFMRDGPLD 125

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRMS  G +A+D+VN  +  +L  IL + GEE+ + RIA AIVK R+  P ++T  L+ +
Sbjct: 126 MRMSQDGPTAADLVNTTDEAELADILYLYGEERASRRIARAIVKAREVTPIESTLQLTGI 185

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           +++ +  SK  + H ATRSFQA+RI VN+E   L +GL +AE+AL+ GG L VV+FHS+E
Sbjct: 186 VERCLPRSKPGQAHVATRSFQAIRIAVNDEYGSLIEGLEAAERALRPGGQLAVVTFHSIE 245

Query: 255 DRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           DR+VK+F   RS G     RH          F   ++K + P  +++A N R+RSA+LR 
Sbjct: 246 DRMVKRFMQLRSGGGGTGSRHAPEIEREAPQFSLKSRKAIGPDDDELAVNPRARSARLRV 305

Query: 314 GMRTVERS-IEDDSFVHLPRL 333
            +RT  R+   + S + +P L
Sbjct: 306 AVRTDVRAGRTERSQLGMPML 326


>gi|306843215|ref|ZP_07475826.1| S-adenosyl-methyltransferase MraW [Brucella sp. BO2]
 gi|306286580|gb|EFM58157.1| S-adenosyl-methyltransferase MraW [Brucella sp. BO2]
          Length = 321

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 160/318 (50%), Positives = 210/318 (66%), Gaps = 6/318 (1%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSL 87
           +I  L PAPG VI+D TFGAGGY+R   + G++VIA+DRDP A+  G+   +++  + +L
Sbjct: 1   MIDALKPAPGAVIVDGTFGAGGYTRRILETGADVIAIDRDPTAIEAGRAMEKEFPGRLNL 60

Query: 88  FQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI 142
            ++ FS L + V         VDGVV D+GVSSMQID  +RGFSFQK GPLDMRMS  G 
Sbjct: 61  VESRFSALDEAVARMSGAGKKVDGVVLDIGVSSMQIDEAERGFSFQKDGPLDMRMSSRGP 120

Query: 143 SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS 202
           SA+D VN+    DL RI   LGEE+ A RIA  I KRR + PF  T DL++ I+  V  +
Sbjct: 121 SAADAVNRLKTGDLARIFNFLGEERHAGRIARMIEKRRAAKPFTRTLDLANAIETLVGRN 180

Query: 203 KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF 262
             +RIHPATR FQALR++VN+E+ ELA+ L +AE+ +K GG L+VV+FHSLEDR+VK+FF
Sbjct: 181 PKDRIHPATRVFQALRVYVNDELGELARALLAAERIIKPGGRLVVVTFHSLEDRMVKRFF 240

Query: 263 ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSI 322
           A R+G     RHM  ++     F    K  V PT E+   N R+RSAKLRAG+RT    +
Sbjct: 241 ADRAGGSAGSRHMPETHMRLPSFTPAVKGAVGPTPEEEERNPRARSAKLRAGIRTENPPL 300

Query: 323 EDD-SFVHLPRLPTLSQF 339
           EDD S   LP+LP  ++ 
Sbjct: 301 EDDLSLFGLPKLPETNEL 318


>gi|220904376|ref|YP_002479688.1| S-adenosyl-methyltransferase MraW [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|263447319|sp|B8IZT3|RSMH_DESDA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|219868675|gb|ACL49010.1| S-adenosyl-methyltransferase MraW [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 327

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 120/327 (36%), Positives = 170/327 (51%), Gaps = 12/327 (3%)

Query: 6   CKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIA 63
            +TMS     T   HV VL  + +A L+P  G   LD T G GG++ +         +  
Sbjct: 2   IQTMSDTTEPT--RHVSVLPVETLAALDPRAGGRYLDGTLGMGGHASAILSSAPGIELCG 59

Query: 64  LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDC 120
           LDRD  A++   + +  +  +  LF   +S   + + + G   VDG + D+GVSS+Q+D 
Sbjct: 60  LDRDEEALALAGQRLSSFGGRAHLFHCRYSDFAEALNELGWDKVDGALLDIGVSSLQLDE 119

Query: 121 GDRGFSFQKSGPLDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178
            +RGFSF   GPLDMRM  +    SA   VN+ +   L   +  LGEE QA RIA AIV 
Sbjct: 120 AERGFSFYGDGPLDMRMDQNSAQPSAWHWVNRESFDKLKDCIATLGEEPQAGRIARAIVD 179

Query: 179 RRQSAPFQTTQDLSSLIQKTVYFSKNNR--IHPATRSFQALRIFVNNEIEELAQGLRSAE 236
            RQ     TT  L++L+++    +   +   HPATR+FQALR+ VN+E+ EL + L    
Sbjct: 180 ARQKNTIDTTGQLAALVERAYPAAWRAKARRHPATRTFQALRMAVNDELGELRRFLDQIL 239

Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVP 295
             L  GG L V++FHSLEDR+VK+            RH+      H    + + KK V  
Sbjct: 240 TWLPIGGRLAVITFHSLEDRMVKQAMRHWVEGCRCPRHIPRCICGHQPEVRILHKKPVQA 299

Query: 296 TQEDVAFNRRSRSAKLRAGMRTVERSI 322
             E++A N R+ SAKLRA  +  E S 
Sbjct: 300 GPEELAANSRAGSAKLRAVEKIAEDSG 326


>gi|149201994|ref|ZP_01878968.1| S-adenosyl-methyltransferase MraW [Roseovarius sp. TM1035]
 gi|149145042|gb|EDM33071.1| S-adenosyl-methyltransferase MraW [Roseovarius sp. TM1035]
          Length = 330

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 148/319 (46%), Positives = 197/319 (61%), Gaps = 6/319 (1%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQE 76
             H+PVLL  +IA + P    V LD T GAGGY+R+    G++ VI +DRDP A    Q 
Sbjct: 11  APHIPVLLRPLIAAVAPVQ-GVWLDGTLGAGGYARALLDAGADQVIGVDRDPLAHDMAQG 69

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
              +Y ++  L    F+Q+ DY  D  +DGVV DLGVSSMQ+D  +RGFSF K GPLDMR
Sbjct: 70  WGAEYGDRLRLVLGNFAQMDDYATD--LDGVVLDLGVSSMQLDLAERGFSFMKDGPLDMR 127

Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
           MS  G SA+D+VN A   DL  IL + GEE+ + RIA AIVK R  AP +TT  L+ LI+
Sbjct: 128 MSQEGPSAADLVNTAEESDLADILYLYGEERASRRIARAIVKARTEAPIETTLHLAGLIE 187

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
           + +  SK  + H ATRSFQA+RI VN+E   L  GL +AE+ALK GG L VV+FHS+EDR
Sbjct: 188 RCLPRSKPGQAHAATRSFQAIRIAVNDEYGALIAGLEAAERALKEGGQLAVVTFHSIEDR 247

Query: 257 LVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           +VK+F  +RS G     RH          F   ++K + P  E++A N R+RSA+LR   
Sbjct: 248 IVKRFLTARSGGGGTGSRHAPEITREEPQFTLKSRKAIGPDDEELAVNPRARSARLRVAT 307

Query: 316 RTVERSIEDD-SFVHLPRL 333
           RT   + + + + + +P L
Sbjct: 308 RTDAPAGQSERAALGVPML 326


>gi|161504759|ref|YP_001571871.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|262826357|sp|A9MQD1|RSMH_SALAR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|160866106|gb|ABX22729.1| hypothetical protein SARI_02882 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 313

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 120/312 (38%), Positives = 180/312 (57%), Gaps = 19/312 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++  Q
Sbjct: 6   KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAQ 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +FS+    FS L DYV ++     +DG++ DLGVSS Q+D  +RGFSF + G
Sbjct: 66  ---AINDPRFSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFMRDG 122

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   T++
Sbjct: 123 PLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIARAIVERNREQPMTRTKE 182

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L ++SF
Sbjct: 183 LAEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSIISF 241

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305
           HSLEDR+VK+F   +S        +  + A          + + K  ++P +++VA N R
Sbjct: 242 HSLEDRIVKRFMREQSRGPQVPAGLPMTEAQLKKLGGRELRVLGK--LMPGEKEVAENPR 299

Query: 306 SRSAKLRAGMRT 317
           +RS+ LR   RT
Sbjct: 300 ARSSVLRIAERT 311


>gi|297616973|ref|YP_003702132.1| S-adenosyl-methyltransferase MraW [Syntrophothermus lipocalidus DSM
           12680]
 gi|297144810|gb|ADI01567.1| S-adenosyl-methyltransferase MraW [Syntrophothermus lipocalidus DSM
           12680]
          Length = 307

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 118/307 (38%), Positives = 174/307 (56%), Gaps = 8/307 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
            HVPVLLE+ +++L   P  V +D T G GG+     +       +I +D+D  A+   +
Sbjct: 1   MHVPVLLEEAVSMLALQPDGVYVDCTVGGGGHLACLVQKLGEKATIIGIDKDAKALEEAR 60

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + + +   +  L    F +LQ  +   G+    G+V DLGVSS Q+D   RGFS+Q+ GP
Sbjct: 61  KKLANVSSKLILIHGDFRRLQVILKMHGISEIHGIVLDLGVSSFQLDDASRGFSYQEEGP 120

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+    +SA  +VN+ + + L  I+  LGEE+ A RIA  IV+ RQ  P  TT +L
Sbjct: 121 LDMRMNTDQQLSAWHLVNEWSEERLALIIRELGEERYARRIAREIVRERQQRPINTTFEL 180

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             +I++ V        HPA R+FQALRI VN E+E L + L  A + L + G + V++FH
Sbjct: 181 VEVIKRAVPAQAKKDKHPARRTFQALRIAVNEELEALEEVLPQAVEVLASEGRIAVITFH 240

Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK FF   S   +      + +  H A  + +TK+ + PT+ ++A N RSRSAK
Sbjct: 241 SLEDRIVKTFFKRESLGCLCPSDQPVCTCNHRARLKIVTKRPITPTEAELARNPRSRSAK 300

Query: 311 LRAGMRT 317
           LR   + 
Sbjct: 301 LRIAEKI 307


>gi|167772169|ref|ZP_02444222.1| hypothetical protein ANACOL_03544 [Anaerotruncus colihominis DSM
           17241]
 gi|167665967|gb|EDS10097.1| hypothetical protein ANACOL_03544 [Anaerotruncus colihominis DSM
           17241]
          Length = 311

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 114/311 (36%), Positives = 174/311 (55%), Gaps = 8/311 (2%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFA 70
           +      HVPVLL+  +  LN  P  + +D T G  G+SR+  +   G  +IALD+DP A
Sbjct: 1   MDELHFSHVPVLLDACLEGLNIRPDGIYVDGTAGGAGHSRAIAERLDGGRLIALDKDPDA 60

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSF 127
           V+     +  +    ++ Q+ FS+L   +   G   VDG++ DLGVSS Q+D  +RGFS+
Sbjct: 61  VAVASSRLAPFGC-ATVVQSDFSELCTVLDKLGIEAVDGILLDLGVSSYQLDTPERGFSY 119

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
               PLDMRM+ +G+SA DVVN  + KDL R+    GEEK A  IA  I+K R   P  T
Sbjct: 120 AHDAPLDMRMTKTGLSARDVVNTYSFKDLCRVFRDYGEEKFAPAIAKNILKSRTQRPIAT 179

Query: 188 TQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T +L+++I  ++    +    +PA R FQA+RI VN E+  L+  L  A + L+ GG + 
Sbjct: 180 TAELAAIIGASIPARARREGGNPAKRVFQAIRIEVNGELSSLSVFLGEAFERLRIGGRMA 239

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           +++FHSLEDR+VK+ FA+            +    +    + + +K +   + ++A N R
Sbjct: 240 IITFHSLEDRMVKQRFAALCRGCTCPPDFPVCICGNQPRGRLLNRKPIEAGERELAANSR 299

Query: 306 SRSAKLRAGMR 316
           S+SAKLR   +
Sbjct: 300 SKSAKLRVIEK 310


>gi|309388985|gb|ADO76865.1| S-adenosyl-methyltransferase MraW [Halanaerobium praevalens DSM
           2228]
          Length = 310

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 113/308 (36%), Positives = 164/308 (53%), Gaps = 10/308 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            H  VLL++ I  L      + LD T G  G+S            +IALDRD  A+   +
Sbjct: 4   KHQAVLLKEAIDYLEIKKDGIYLDGTLGRAGHSSEILHNLSEIGKLIALDRDTAAIKAVE 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                 K    L  + F  L   +     K VDG++FDLGVSS Q+D  +RGFS+QK+GP
Sbjct: 64  SKFSKSKS-LILKHSNFQDLDQVLDQLKIKAVDGMLFDLGVSSPQLDNPERGFSYQKNGP 122

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+ S  ++A  +VN  +  +L +I+   GEE  ++RIA  IVK R+    +TT DL
Sbjct: 123 LDMRMNSSQSLTAKTIVNNYSAAELEKIITEYGEENWSARIAEFIVKMRKEKVIETTDDL 182

Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+  +  + + +  HPA R+FQALRI  NNE+E+L   +  A   LK GG L++++F
Sbjct: 183 VEVIKAAIPKAVRRSGGHPARRTFQALRIETNNELEQLKNLIDKAVSYLKPGGRLVIITF 242

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  F   +          I      +  + ITK  +  ++ +   N RSRSA
Sbjct: 243 HSLEDRIVKHKFRDLAKDCTCPPDFPICVCDKKSEVKVITKSPIQASEIEKEGNPRSRSA 302

Query: 310 KLRAGMRT 317
           K+R   + 
Sbjct: 303 KMRVAEKI 310


>gi|242373465|ref|ZP_04819039.1| S-adenosyl-methyltransferase MraW [Staphylococcus epidermidis
           M23864:W1]
 gi|242348828|gb|EES40430.1| S-adenosyl-methyltransferase MraW [Staphylococcus epidermidis
           M23864:W1]
          Length = 304

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 98/301 (32%), Positives = 158/301 (52%), Gaps = 9/301 (2%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRD 80
           +L + I  LN     V +D T G  G++            +IA+D+D  A+   +E +++
Sbjct: 1   MLNETIDYLNIKEDGVYVDCTLGGAGHALYLLNQLNDEGRLIAIDQDLTAIENAKEVLKE 60

Query: 81  YKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
           +  + +     F +L + + +   + VDG+ +DLGVSS Q+D  +RGFS+     LDMRM
Sbjct: 61  HLHKVTFVHNNFRELTNILKELNIEKVDGIYYDLGVSSPQLDVPERGFSYHHDAKLDMRM 120

Query: 138 SCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
             +  +SA +VVN+ + + L +I    GEEK + +IA  I   R+  P +TT  L  +I+
Sbjct: 121 DQTQSLSAYEVVNEWSYEALVKIFYRYGEEKFSKQIARRIEANREQQPIETTLQLVDIIK 180

Query: 197 KTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           + +    +    HPA R FQA+RI VN+E+      +  A + +K  G + V++FHSLED
Sbjct: 181 EGIPAKARRKGGHPAKRVFQAIRIAVNDELSAFEDSIEQAIENVKVNGRISVITFHSLED 240

Query: 256 RLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           RL K+ F          R   I   A+    + + +K +  T+ED+  N R+RSAKLR  
Sbjct: 241 RLCKQIFQEYEKGPEVPRGLPIIPEAYSPKLKRVNRKPITATEEDLDENNRARSAKLRVA 300

Query: 315 M 315
            
Sbjct: 301 E 301


>gi|222031913|emb|CAP74651.1| S-adenosyl-L-methionine-dependent methyltransferase [Escherichia
           coli LF82]
 gi|312944688|gb|ADR25515.1| S-adenosyl-methyltransferase MraW [Escherichia coli O83:H1 str. NRG
           857C]
          Length = 313

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 118/312 (37%), Positives = 179/312 (57%), Gaps = 19/312 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++  +
Sbjct: 6   KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +FS+    FS L +YV ++     +DG++ DLGVSS Q+D  +RGFSF + G
Sbjct: 66  TI---DDPRFSIIYGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDG 122

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   T++
Sbjct: 123 PLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKE 182

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L ++SF
Sbjct: 183 LAEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISF 241

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305
           HSLEDR+VK+F    S        +  +            +++ K  ++P +E+VA N R
Sbjct: 242 HSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGK--LMPGEEEVAENPR 299

Query: 306 SRSAKLRAGMRT 317
           +RS+ LR   RT
Sbjct: 300 ARSSVLRIAERT 311


>gi|119944895|ref|YP_942575.1| S-adenosyl-methyltransferase MraW [Psychromonas ingrahamii 37]
 gi|262825199|sp|A1SU11|RSMH_PSYIN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|119863499|gb|ABM02976.1| S-adenosyl-methyltransferase MraW [Psychromonas ingrahamii 37]
          Length = 315

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 128/318 (40%), Positives = 183/318 (57%), Gaps = 14/318 (4%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSC 73
           +  H  VLL++ +  L      + +D TFG GG+SR           +IA+DRDP A+  
Sbjct: 1   MAKHTTVLLDEAVNGLGLKTDGIYVDGTFGRGGHSRHILGQLGAQGRLIAIDRDPRAIET 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQK 129
           G+  M++   +F++    FS L +Y+ + G    +DGV+ DLGVSS QID  DRGFSF +
Sbjct: 61  GEALMKE-DPRFTIIHGPFSGLAEYIKELGLAGQIDGVLLDLGVSSPQIDDADRGFSFMR 119

Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM   SGISA+  + +A+V D+  +L   GEEK A RIA AIV  R   PF  T
Sbjct: 120 DGPLDMRMDPTSGISAAQWLAKADVDDIGWVLKTFGEEKFAFRIARAIVADRTETPFLRT 179

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ LI++     +  + HPATRSFQA+RI+VN+E+EE+ + L  A + L  GG L V+
Sbjct: 180 LQLAQLIERLCP-KREKKKHPATRSFQAIRIYVNSELEEIHKVLDGALEILAIGGQLSVI 238

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA---HPAVFQSITKKVVVPTQEDVAFNRR 305
           SFHSLEDR+VK+F   +         +  + A   H    +S+  K + P+ E++  N R
Sbjct: 239 SFHSLEDRIVKRFIRKQEKGREYPPGLPLTEAQMQHGKTLKSLA-KALKPSAEEINENTR 297

Query: 306 SRSAKLRAGMRTVERSIE 323
           +RS+ LR   +  E   E
Sbjct: 298 ARSSVLRVAQKIAEPESE 315


>gi|260912995|ref|ZP_05919480.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Pasteurella dagmatis ATCC 43325]
 gi|260632985|gb|EEX51151.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Pasteurella dagmatis ATCC 43325]
          Length = 321

 Score =  366 bits (941), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 122/325 (37%), Positives = 177/325 (54%), Gaps = 20/325 (6%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M+     +  +H+ VLL + +  L      + +D TFG GG+SR           +IA+D
Sbjct: 1   MNKQNTFSSPEHITVLLNEAVDGLALKERGIYIDGTFGRGGHSRLILSKLSDNGRLIAID 60

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCG 121
           RDP A++   +       +F +   +FS + +     G    +DG++ DLGVSS Q+D  
Sbjct: 61  RDPRAIAEANKI---QDARFHIEHNSFSAIPEICEKLGLTGKIDGILLDLGVSSPQLDEA 117

Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF K GPLDMRM  + G+SAS+ + Q +  DL  +L   GEE+ A RIA AIV   
Sbjct: 118 ERGFSFMKDGPLDMRMDTTQGLSASEWLQQVSESDLAWVLKTFGEERFAKRIASAIVNYN 177

Query: 181 QS------APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234
           +S       P   T  L+ LI ++V F K+   HPATRSFQA+RIF+N E++EL   L+S
Sbjct: 178 KSAQQNGSGPLTRTLQLAELIAQSVPF-KDKHKHPATRSFQAIRIFINAELDELESVLQS 236

Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI--TKKV 292
           A   L   G L ++SFHSLEDR+VK F   +S      + +          Q++    K 
Sbjct: 237 ALSVLAPEGRLSIISFHSLEDRMVKHFMRKQSKGESLPKGLPLREDQIKRSQTLKTIGKA 296

Query: 293 VVPTQEDVAFNRRSRSAKLRAGMRT 317
           ++P++E+ A N RSRSA LR   + 
Sbjct: 297 IMPSEEEQANNPRSRSAVLRVAEKI 321


>gi|255010082|ref|ZP_05282208.1| S-adenosyl-methyltransferase MraW [Bacteroides fragilis 3_1_12]
 gi|313147877|ref|ZP_07810070.1| S-adenosyl-methyltransferase mraW [Bacteroides fragilis 3_1_12]
 gi|313136644|gb|EFR54004.1| S-adenosyl-methyltransferase mraW [Bacteroides fragilis 3_1_12]
          Length = 304

 Score =  366 bits (941), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 110/310 (35%), Positives = 166/310 (53%), Gaps = 16/310 (5%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFA 70
              I  HVPVLL++ +  +N  P    +D TFG GG+SR        G  ++  D+D  A
Sbjct: 3   EEEITYHVPVLLKESVDAMNITPDGTYVDVTFGGGGHSREILSRLGNGGRLLGFDQDEDA 62

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSF 127
                E        F+  ++ F  L +++      GVD ++ DLGVSS   D  +RGFSF
Sbjct: 63  -----ERNIVNDPHFTFVRSNFRYLHNFLRYHDIEGVDSILADLGVSSHHFDDSERGFSF 117

Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           +  G LDMRM+  +GI+A+DVVN    + L  I  + GE K + ++A  IVK R     +
Sbjct: 118 RFDGKLDMRMNKRAGITAADVVNTYEEERLADIFYLYGELKNSRKLASVIVKARSGQKIE 177

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T  +   +++    F +        + FQALRI VN E+E L + L +A +ALK GG L+
Sbjct: 178 TIGEFLEVVKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLMAATEALKPGGRLV 235

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+++HSLEDR+VK    + + +    +    +   P  F+ +  KV+VP +E++A N RS
Sbjct: 236 VITYHSLEDRMVKNIMKTGNVEGKTTQDFFGNLQTP--FRLVNNKVIVPDEEEIARNPRS 293

Query: 307 RSAKLRAGMR 316
           RSAKLR   +
Sbjct: 294 RSAKLRIAEK 303


>gi|331703577|ref|YP_004400264.1| S adenosyl methyltransferase MraW [Mycoplasma mycoides subsp. capri
           LC str. 95010]
 gi|328802132|emb|CBW54286.1| S adenosyl methyltransferase MraW [Mycoplasma mycoides subsp. capri
           LC str. 95010]
          Length = 308

 Score =  366 bits (941), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 102/310 (32%), Positives = 164/310 (52%), Gaps = 15/310 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
            H+PVLL++ I  LN  P  + +D T G  G+S    K  +    + A+D+D  A+   +
Sbjct: 3   KHIPVLLKESIEYLNIKPDGIYVDCTLGRAGHSSEILKRLNQKGFLYAIDQDQIAIDQAK 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E +      F L Q  FS L   +       VDG+++DLGVSS QID   RGFS++  GP
Sbjct: 63  EKLEQINNNFLLIQGNFSNLSALLAINHVFNVDGILYDLGVSSPQIDIASRGFSYKMDGP 122

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  +  ++A  V+N  +   ++ IL   GEE  +  I+  IV+ R   P  +T +L
Sbjct: 123 LDMRMDLNSTLTAHQVINTYSESQISEILFKYGEESFSKSISKKIVESR---PINSTLEL 179

Query: 192 SSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+  +       + HPA ++FQALRI++NNE+  L   L+ A   L +   + V++F
Sbjct: 180 VEIIKSALPQKVLKQKKHPAKKTFQALRIYINNELIALENSLKQALDLLNSKARICVITF 239

Query: 251 HSLEDRLVKKFF---ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           HSLE+++VK  F    +   + +     I ++ + + F+ + KK + P+  ++  N RS 
Sbjct: 240 HSLEEKIVKNIFNNSTNYYQEQLLSNLPIKADLN-SKFKLVIKKPIKPSLLELEQNHRSH 298

Query: 308 SAKLRAGMRT 317
           SAKL    + 
Sbjct: 299 SAKLWVIEKN 308


>gi|324008349|gb|EGB77568.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 57-2]
          Length = 313

 Score =  366 bits (941), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 118/312 (37%), Positives = 179/312 (57%), Gaps = 19/312 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++  +
Sbjct: 6   KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +FS+    FS L +YV ++     +DG++ DLGVSS Q+D  +RGFSF + G
Sbjct: 66  TI---DDRRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDG 122

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   T++
Sbjct: 123 PLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKE 182

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L ++SF
Sbjct: 183 LAEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISF 241

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305
           HSLEDR+VK+F    S        +  +            +++ K  ++P +E+VA N R
Sbjct: 242 HSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGK--LMPGEEEVAENPR 299

Query: 306 SRSAKLRAGMRT 317
           +RS+ LR   RT
Sbjct: 300 ARSSVLRIAERT 311


>gi|119469206|ref|ZP_01612190.1| S-adenosyl-methyltransferase MraW [Alteromonadales bacterium TW-7]
 gi|119447458|gb|EAW28726.1| S-adenosyl-methyltransferase MraW [Alteromonadales bacterium TW-7]
          Length = 312

 Score =  366 bits (941), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 125/308 (40%), Positives = 182/308 (59%), Gaps = 13/308 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
           +HV VL+++ I  L   P  + +D TFG GG+S            + A+D+DP A+    
Sbjct: 6   EHVSVLMDETIDALAIKPDGIYMDGTFGRGGHSGQILARLGDAGRLQAIDQDPQAIKSA- 64

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           E   D   +F++    FS+L D          VDG++ D+GVSS Q+D  +RGFSF K G
Sbjct: 65  EKFAD-DSRFAIAHTRFSKLYDVAEQNDLIGKVDGILLDIGVSSPQLDDAERGFSFMKDG 123

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM   SG SA+  + +A + D+T ++  LGEEK   RIAH I++ R+  P  TT+ 
Sbjct: 124 PLDMRMDPTSGRSAAQWLAEAELDDITHVIKKLGEEKFGKRIAHKILETREHTPITTTKQ 183

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ L+ + V   K+   HPATR+FQA+RI++N+E+EE+   L+SA K LK GG L+V+SF
Sbjct: 184 LADLVDEAVPV-KDKFKHPATRTFQAIRIYINSELEEIQTALQSAVKVLKPGGRLVVISF 242

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI--TKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+VK+F   +S      R +  ++A      ++    K + P+ E+VA N RSRS
Sbjct: 243 HSLEDRIVKQFIRKQSKGEALPRGLPLTDAQINQNLTLKAVGKAIKPSTEEVARNPRSRS 302

Query: 309 AKLRAGMR 316
           + LR   R
Sbjct: 303 SVLRVAQR 310


>gi|24378941|ref|NP_720896.1| S-adenosyl-methyltransferase MraW [Streptococcus mutans UA159]
 gi|30173045|sp|Q8DVM7|RSMH_STRMU RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|24376827|gb|AAN58202.1|AE014891_6 conserved hypoyhetical protein [Streptococcus mutans UA159]
          Length = 316

 Score =  366 bits (941), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 101/321 (31%), Positives = 165/321 (51%), Gaps = 15/321 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           M++  H     H+ VLL + I +L+  P  + +DAT G  G+S           ++   D
Sbjct: 1   MTNDFH-----HITVLLHETIDMLDIKPDGIYVDATLGGAGHSECLLSKLGKEGHLYCFD 55

Query: 66  RDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120
           +D  A+   +  ++ Y    Q S  +  F  L+  + D+G+   DG+ +DLGVSS Q+D 
Sbjct: 56  QDQKAIDNAKIRLQQYVKTGQVSFIKDNFRHLKSRLADEGIYEIDGICYDLGVSSPQLDE 115

Query: 121 GDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS++K  PLDMRM+    ++A DVVN  + +DL R+    GE+K + +IA  I   
Sbjct: 116 RERGFSYKKDAPLDMRMNQDAQLTAFDVVNTYDYRDLVRLFFKYGEDKFSKQIARKIESA 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R+    +TT +L+ +I+      +   + HPA + FQA+RI VN+E+    + L  A   
Sbjct: 176 RKEKLIETTAELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAAEESLTQALDL 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L   G + V++FHSLEDRL K+ F   +   +              F  + +K ++P   
Sbjct: 236 LALNGRIAVITFHSLEDRLTKQLFKEVTTLDVPKGLPFVPENLQPKFSLVNRKPILPNAR 295

Query: 299 DVAFNRRSRSAKLRAGMRTVE 319
           +++ N R+ SAKLR   +   
Sbjct: 296 ELSENNRAHSAKLRVIQKIRN 316


>gi|227499845|ref|ZP_03929938.1| S-adenosylmethionine-dependent methyltransferase involved in cell
           envelope biogenesis [Anaerococcus tetradius ATCC 35098]
 gi|227217954|gb|EEI83227.1| S-adenosylmethionine-dependent methyltransferase involved in cell
           envelope biogenesis [Anaerococcus tetradius ATCC 35098]
          Length = 309

 Score =  366 bits (941), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 109/313 (34%), Positives = 173/313 (55%), Gaps = 12/313 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69
           +++   +H+PVL    I  LN     V +D T G GG+S+   +       +IA+D+D  
Sbjct: 1   MNNMKFEHIPVLATDTIKNLNIKKDGVYVDLTLGKGGHSKMILENLSDKGRLIAIDQDKE 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFS 126
           A+   +E ++D+    +   + F + ++ + + G   +DG + D+GVSS QID  +RGFS
Sbjct: 61  AIEAAKENLKDF-SNVTFINSNFEKFEEVLANLGLDLIDGALMDIGVSSYQIDNAERGFS 119

Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           + K GPLDMRM+  + ++A  VVN+ +  +L RI    GEE+ +  +A  I+K+R     
Sbjct: 120 YMKDGPLDMRMNQDNELTAEIVVNEYSQDELERIFFEYGEERFSKSVARNIIKQRSEGRI 179

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            +T  L  +I+K++   K+N  HP  R FQALRI VN E+E L   + +    LK GG +
Sbjct: 180 DSTIKLRDIIRKSI---KSNETHPEKRVFQALRIEVNRELEVLENTIETVVDHLKVGGRI 236

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
            ++SFHSLEDR+VK  F   +   +      +    H A  + IT+K +  T +++  N 
Sbjct: 237 AIISFHSLEDRIVKNKFKDLATSCICPPELPVCVCNHKAKIKVITRKPITATMKELKMNS 296

Query: 305 RSRSAKLRAGMRT 317
           RS+ AKLR G R 
Sbjct: 297 RSKPAKLRVGERI 309


>gi|194434429|ref|ZP_03066691.1| S-adenosyl-methyltransferase MraW [Shigella dysenteriae 1012]
 gi|194417345|gb|EDX33452.1| S-adenosyl-methyltransferase MraW [Shigella dysenteriae 1012]
 gi|332098043|gb|EGJ03016.1| S-adenosyl-methyltransferase MraW [Shigella dysenteriae 155-74]
          Length = 313

 Score =  366 bits (941), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 118/312 (37%), Positives = 179/312 (57%), Gaps = 19/312 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++  +
Sbjct: 6   KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +FS+    FS L +YV ++     +DG++ DLGVSS Q+D  +RGFSF + G
Sbjct: 66  TI---DDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDG 122

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   T++
Sbjct: 123 PLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKE 182

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L ++SF
Sbjct: 183 LAEVVAAATSV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISF 241

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305
           HSLEDR+VK+F    S        +  +            +++ K  ++P +E+VA N R
Sbjct: 242 HSLEDRIVKRFMRENSRGPQVPVGLPMTEEQLKKLGGRQLRALGK--LMPGEEEVAENPR 299

Query: 306 SRSAKLRAGMRT 317
           +RS+ LR   RT
Sbjct: 300 ARSSVLRIAERT 311


>gi|288800555|ref|ZP_06406013.1| S-adenosyl-methyltransferase MraW [Prevotella sp. oral taxon 299
           str. F0039]
 gi|288332768|gb|EFC71248.1| S-adenosyl-methyltransferase MraW [Prevotella sp. oral taxon 299
           str. F0039]
          Length = 312

 Score =  366 bits (941), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 112/309 (36%), Positives = 167/309 (54%), Gaps = 18/309 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA-----V 71
           H+PVLL + I  LN  PG + +D T G GG+S    K     +++ + D+D  A      
Sbjct: 9   HIPVLLNESIDGLNIQPGGIYVDVTMGGGGHSHEILKRLDVNAHLYSFDQDADAEANLKQ 68

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQ 128
           + G + ++D  E+F+  ++ F  L++++   GV   DG++ DLGVSS   D   RGFSF+
Sbjct: 69  NHGDDLLKD--ERFTFVRSNFRYLKNWMRYHGVEQIDGLLADLGVSSHHFDDESRGFSFR 126

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
              PLDMRM+  S  +A+D+VN    + L  I  + GE K + +IA  +VK RQ    +T
Sbjct: 127 FESPLDMRMNKRSSRTAADIVNNYAEEALADIFYLYGELKNSRKIASLLVKARQEKRIET 186

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T D  ++++    F +        + FQALRI VN E+  L + L S    LK GG L V
Sbjct: 187 TGDFIAVVEPL--FKREREKKDLAKLFQALRIEVNGEMSALKELLMSVVDMLKPGGRLSV 244

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +++HSLEDR+VK    + + +    +        P  F+ I  KV+VPT E+   N RSR
Sbjct: 245 ITYHSLEDRIVKNIMKAGNIEGKIEQDFFGCINTP--FKLINNKVIVPTDEEQEQNPRSR 302

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 303 SAKLRIAEK 311


>gi|116494758|ref|YP_806492.1| SAM-dependent methyltransferase for cell envelope biogenesis
           [Lactobacillus casei ATCC 334]
 gi|122263824|sp|Q039S2|RSMH_LACC3 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|116104908|gb|ABJ70050.1| SAM-dependent methyltransferase for cell envelope biogenesis
           [Lactobacillus casei ATCC 334]
          Length = 313

 Score =  366 bits (941), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 112/311 (36%), Positives = 161/311 (51%), Gaps = 10/311 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73
           T   H  VLL++  A L   P    +DAT G GG++R          +IA D+D  A++ 
Sbjct: 2   TEFKHETVLLKEATAALAVKPAGTYVDATLGRGGHTRQILNHLTTGRLIAFDQDEAAIAT 61

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
                    +Q +L    F  L D +   G   VDG+++DLGVSS Q D   RGFS++  
Sbjct: 62  VTADFGTLPKQLTLVHRNFRDLTDALTTLGITEVDGILYDLGVSSPQFDDSKRGFSYRFD 121

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM     + A  +VN+    DL RI    GEE  + +IA  I + R   P  TT 
Sbjct: 122 APLDMRMDQRQTLDAKTIVNEWPYADLVRIFSRYGEEHFSKQIARRIEQARTVQPITTTF 181

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L  LI+  +    +    HPA + FQA+RI VN+E+  L   L  A K +  GG + V+
Sbjct: 182 QLVELIKAGIPAKARRTGGHPAKKVFQAIRIAVNDELSALESSLEQALKLINVGGRISVI 241

Query: 249 SFHSLEDRLVKKFFASRS--GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           +F SLEDRLVK  F   S    V     +IP++A P  ++ + +K ++P++E++A N R+
Sbjct: 242 TFQSLEDRLVKTMFKEVSSVQDVPRGLPVIPASAQPN-YRLVNRKPILPSEEELAVNHRA 300

Query: 307 RSAKLRAGMRT 317
            SAKLR   + 
Sbjct: 301 HSAKLRVIEKI 311


>gi|215485248|ref|YP_002327679.1| S-adenosyl-methyltransferase MraW [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312966210|ref|ZP_07780436.1| S-adenosyl-methyltransferase MraW [Escherichia coli 2362-75]
 gi|263447451|sp|B7UID2|RSMH_ECO27 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|215263320|emb|CAS07635.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Escherichia coli O127:H6 str. E2348/69]
 gi|312289453|gb|EFR17347.1| S-adenosyl-methyltransferase MraW [Escherichia coli 2362-75]
          Length = 313

 Score =  366 bits (941), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 118/312 (37%), Positives = 180/312 (57%), Gaps = 19/312 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++  +
Sbjct: 6   KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +FS+    FS L +YV ++     +DG++ DLGVSS Q+D  +RGFSF + G
Sbjct: 66  TI---DDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDG 122

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   T++
Sbjct: 123 PLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKE 182

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L +GG L ++SF
Sbjct: 183 LAEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLASGGRLSIISF 241

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305
           HSLEDR+VK+F    S        +  +            +++ K  ++P +E+VA N R
Sbjct: 242 HSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGK--LMPGEEEVAENPR 299

Query: 306 SRSAKLRAGMRT 317
           +RS+ LR   RT
Sbjct: 300 ARSSVLRIAERT 311


>gi|227885013|ref|ZP_04002818.1| S-adenosyl-methyltransferase MraW [Escherichia coli 83972]
 gi|301048472|ref|ZP_07195498.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 185-1]
 gi|227837842|gb|EEJ48308.1| S-adenosyl-methyltransferase MraW [Escherichia coli 83972]
 gi|300299686|gb|EFJ56071.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 185-1]
 gi|307551926|gb|ADN44701.1| S-adenosyl-dependent methyltransferase MraW [Escherichia coli ABU
           83972]
          Length = 313

 Score =  366 bits (941), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 119/312 (38%), Positives = 179/312 (57%), Gaps = 19/312 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++  +
Sbjct: 6   KHFTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +FS+    FS L +YV D+     +DG++ DLGVSS Q+D  +RGFSF + G
Sbjct: 66  TI---DDPRFSIIHGPFSALGEYVADRDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDG 122

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   T++
Sbjct: 123 PLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKE 182

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L ++SF
Sbjct: 183 LAEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLHVLAPGGRLSIISF 241

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305
           HSLEDR+VK+F    S        +  +            +++ K  ++P +E+VA N R
Sbjct: 242 HSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGK--LMPGEEEVAENPR 299

Query: 306 SRSAKLRAGMRT 317
           +RS+ LR   RT
Sbjct: 300 ARSSVLRIAERT 311


>gi|56412392|ref|YP_149467.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197361328|ref|YP_002140963.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|68565445|sp|Q5PDH4|RSMH_SALPA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262826422|sp|B5BLG4|RSMH_SALPK RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|56126649|gb|AAV76155.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197092803|emb|CAR58229.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 313

 Score =  366 bits (940), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 120/312 (38%), Positives = 181/312 (58%), Gaps = 19/312 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++  Q
Sbjct: 6   KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAQ 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +FS+    FS L DYV ++     +DG++ DLGVSS Q+D  +RGFSF + G
Sbjct: 66  ---AISDPRFSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFMRDG 122

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   T++
Sbjct: 123 PLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIARAIVERNREQPMTRTKE 182

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L ++SF
Sbjct: 183 LAEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSIISF 241

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305
           HSLEDR+VK+F   +S        +  + A          +++ K  ++P +++VA N R
Sbjct: 242 HSLEDRIVKRFMREQSRGPQVPAGLPMTEAQLKKLGGRELRALGK--LMPGEKEVAENPR 299

Query: 306 SRSAKLRAGMRT 317
           +RS+ LR   RT
Sbjct: 300 ARSSVLRIAERT 311


>gi|87161763|ref|YP_493770.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|88194885|ref|YP_499685.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|253731798|ref|ZP_04865963.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|87127737|gb|ABD22251.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|87202443|gb|ABD30253.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|253724469|gb|EES93198.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|298694470|gb|ADI97692.1| S-adenosyl-methyltransferase [Staphylococcus aureus subsp. aureus
           ED133]
 gi|302751002|gb|ADL65179.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus str. JKD6008]
 gi|320141006|gb|EFW32853.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus MRSA131]
 gi|320143062|gb|EFW34852.1| S-adenosyl-methyltransferase MraW [Staphylococcus aureus subsp.
           aureus MRSA177]
          Length = 304

 Score =  366 bits (940), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 98/301 (32%), Positives = 157/301 (52%), Gaps = 9/301 (2%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRD 80
           +L + I  LN     V +D T G  G++            +IA+D+D  A+   +E ++D
Sbjct: 1   MLNETIDYLNVKENGVYIDCTLGGAGHALYLLNQLNDDGRLIAIDQDQTAIDNAKEVLKD 60

Query: 81  YKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
           +  + +   + F +L   + D   + VDG+ +DLGVSS Q+D  +RGFS+     LDMRM
Sbjct: 61  HLHKVTFVHSNFRELTQILKDLNIEKVDGIYYDLGVSSPQLDIPERGFSYHHDATLDMRM 120

Query: 138 SCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
             +  ++A ++VN  + + L +I    GEEK + +IA  I   R+  P  TT +L  +I+
Sbjct: 121 DQTQELTAYEIVNNWSYEALVKIFYRYGEEKFSKQIARRIEAHREQQPITTTLELVDIIK 180

Query: 197 KTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           + +    +    HPA R FQALRI VN+E+      +  A + +K  G + V++FHSLED
Sbjct: 181 EGIPAKARRKGGHPAKRVFQALRIAVNDELSAFEDSIEQAIELVKVDGRISVITFHSLED 240

Query: 256 RLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           RL K+ F          R   +   A+    + + +K +  T+ED+  N R+RSAKLR  
Sbjct: 241 RLCKQVFQEYEKGPEVPRGLPVIPEAYTPKLKRVNRKPITATEEDLDDNNRARSAKLRVA 300

Query: 315 M 315
            
Sbjct: 301 E 301


>gi|42561121|ref|NP_975572.1| S-adenosyl-methyltransferase MraW [Mycoplasma mycoides subsp.
           mycoides SC str. PG1]
 gi|115311585|sp|P62473|RSMH_MYCMS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|42492618|emb|CAE77214.1| MraW methylase family protein [Mycoplasma mycoides subsp. mycoides
           SC str. PG1]
 gi|301320523|gb|ADK69166.1| S-adenosyl-methyltransferase MraW [Mycoplasma mycoides subsp.
           mycoides SC str. Gladysdale]
          Length = 308

 Score =  366 bits (940), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 102/310 (32%), Positives = 164/310 (52%), Gaps = 15/310 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
            H+PVLL++ I  LN  P  + +D T G  G+S    K  +    + A+D+D  A+   +
Sbjct: 3   KHIPVLLKESIEYLNIKPDGIYVDCTLGRAGHSSEILKKLNQKGFLYAIDQDQIAIDQAK 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E +      F L Q  FS L   +       VDG+++DLGVSS QID   RGFS++  GP
Sbjct: 63  EKLEQINNNFLLIQGNFSNLSALLAINHVFNVDGILYDLGVSSPQIDIASRGFSYKMDGP 122

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  +  ++A  V+N  +   ++ IL   GEE  +  I+  IV+ R   P  +T +L
Sbjct: 123 LDMRMDLNSTLTAHQVINTYSESQISEILFKYGEESFSKSISKKIVESR---PINSTLEL 179

Query: 192 SSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+  +       + HPA ++FQALRI++NNE+  L   L+ A   L +   + V++F
Sbjct: 180 VEIIKSALPQKVLKQKKHPAKKTFQALRIYINNELIALENSLKQALDLLNSKARICVITF 239

Query: 251 HSLEDRLVKKFF---ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           HSLE+++VK  F    +   + +     I ++ + + F+ + KK + P+  ++  N RS 
Sbjct: 240 HSLEEKIVKNIFNNSTNYYQEQLLSNLPIKADLN-SKFKLVIKKPIKPSLLELEQNHRSH 298

Query: 308 SAKLRAGMRT 317
           SAKL    + 
Sbjct: 299 SAKLWVIEKN 308


>gi|85858517|ref|YP_460719.1| S-adenosyl-methyltransferase mraW [Syntrophus aciditrophicus SB]
 gi|123515897|sp|Q2LR39|RSMH_SYNAS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|85721608|gb|ABC76551.1| S-adenosyl-methyltransferase mraW [Syntrophus aciditrophicus SB]
          Length = 315

 Score =  366 bits (940), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 112/307 (36%), Positives = 175/307 (57%), Gaps = 9/307 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H PVLLE+ IA LN   G + +D T G GG++    +  +    ++ +D D  A+   ++
Sbjct: 9   HEPVLLEEAIASLNCRGGGIYVDGTVGGGGHAALILERSAPDGFLLGMDVDGDALQAAEK 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  +  + +L +A ++ ++  + D     VDG++ DLGVSS Q+D  +RGFS  K  PL
Sbjct: 69  RLMPFGRRKTLVKANYADMRKVLADLKILQVDGILLDLGVSSHQLDAAERGFSLLKDAPL 128

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM    G SA DVVN  + ++L  I+   GEE  A RIA AI ++R+  P ++T  L+
Sbjct: 129 DMRMDSEAGRSAYDVVNTCSERELKDIIRKYGEEIMAGRIARAIAEKRKDTPIKSTTQLA 188

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           +++   +    ++ +IHPATR+FQALRI++NNE+  L + +  +   LK GG   ++SFH
Sbjct: 189 AIVAGALPGGFRHKKIHPATRTFQALRIYINNELSNLHRAIFDSTDCLKPGGRFSIISFH 248

Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLED LVK  F S     +      + +       + IT+K + P +++V  N RSRSA+
Sbjct: 249 SLEDSLVKNGFRSLEKGCICPADMPVCACGQSPRLKVITRKPISPCRDEVEANPRSRSAR 308

Query: 311 LRAGMRT 317
           LR   R 
Sbjct: 309 LRTAERI 315


>gi|34499806|ref|NP_904021.1| S-adenosyl-methyltransferase MraW [Chromobacterium violaceum ATCC
           12472]
 gi|42559445|sp|Q7NPZ1|RSMH_CHRVO RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|34105656|gb|AAQ62010.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 320

 Score =  366 bits (940), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 118/322 (36%), Positives = 172/322 (53%), Gaps = 10/322 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPF 69
           +      H  VLL + +  L   P  V +D TFG GG+SR           +IA D+DP 
Sbjct: 1   MSTPTFVHRTVLLTEAVDALAIRPDGVYVDCTFGRGGHSRLILSKLGPSGRLIAFDKDPE 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFS 126
           A++   + +     +F++    F  L   +      GVDGV+ DLGVSS QID G RGFS
Sbjct: 61  AIAVA-DRLAAEDSRFNIVHNGFETLSAELARLGVAGVDGVLMDLGVSSPQIDDGSRGFS 119

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           F+   PLDMRM  + G++A++ +  A+  D+  ++   GEE+ A +IA AIV +R  +P 
Sbjct: 120 FRFDAPLDMRMDTTRGVTAAEWLATADEADIREVIKTYGEERFARKIAAAIVAQRDESPI 179

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            TT++L+ L+ + V   +  +  PATR+FQA+RIFVN E++EL   L  A + L  GG L
Sbjct: 180 TTTRELAVLVGQNVRTREPGQ-DPATRTFQAIRIFVNRELDELKAVLPQAARLLNEGGRL 238

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFNR 304
            V+SFHSLEDR+VK +    S +       +   A  A     +  K +    E+V  N 
Sbjct: 239 AVISFHSLEDRIVKLYLRDVSSEEKLPAWAMVRAADMAQPPIDLVGKAIRAGDEEVRENP 298

Query: 305 RSRSAKLRAGMRTVERSIEDDS 326
           R+RSA +R   RT     E D+
Sbjct: 299 RARSAIMRVAQRTAAPWREGDA 320


>gi|87122635|ref|ZP_01078512.1| hypothetical protein MED121_20371 [Marinomonas sp. MED121]
 gi|86162093|gb|EAQ63381.1| hypothetical protein MED121_20371 [Marinomonas sp. MED121]
          Length = 313

 Score =  366 bits (940), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 114/313 (36%), Positives = 177/313 (56%), Gaps = 10/313 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFA 70
           +  +I  H+ V+L + +  L   P    +D TFG GG+SR   +      ++  D+DP A
Sbjct: 1   MTESIPVHISVMLNESVEDLITDPNGNYIDGTFGRGGHSRLVLQKLENGKLLGFDKDPVA 60

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRGF 125
           +  G + +     +F + Q +F+ +  Y+         +DGV+ DLGVSS Q+D  +RGF
Sbjct: 61  IEYG-KALEGEDARFQIVQDSFASMDQYIASHLDESGKLDGVLMDLGVSSPQLDDAERGF 119

Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF   GPLDMRM+   G+SA+  + QA  K++  ++   GEE+ + RIA AI + R    
Sbjct: 120 SFMNDGPLDMRMNPGVGLSAAQWIAQAKEKEIADVMYQYGEERFSRRIAKAICEYRAHTE 179

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
             TT  L+++++      +  + +PATR+FQ +RIF+NNE+ +L  GL SA  ALK GG 
Sbjct: 180 ILTTLQLANIVKDANPAWEKGK-NPATRAFQGIRIFINNELGDLETGLESAANALKVGGR 238

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           L+V+SFHSLEDR+VK+F  + S      RH+   N   ++      K + P++++V  N 
Sbjct: 239 LVVISFHSLEDRIVKRFMKTMSKGPDLPRHLPIRNTELSIKFKTIGKAIKPSKQEVDDNV 298

Query: 305 RSRSAKLRAGMRT 317
           RSRSA +R   R 
Sbjct: 299 RSRSAVMRVLERV 311


>gi|168464328|ref|ZP_02698231.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|194443193|ref|YP_002039352.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|262826395|sp|B4SU42|RSMH_SALNS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|194401856|gb|ACF62078.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|195632559|gb|EDX51013.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
          Length = 313

 Score =  366 bits (940), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 120/312 (38%), Positives = 181/312 (58%), Gaps = 19/312 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++  Q
Sbjct: 6   KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAQ 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +FS+    FS L DYV ++     +DG++ DLGVSS Q+D  +RGFSF + G
Sbjct: 66  ---AINDPRFSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFMRDG 122

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   T++
Sbjct: 123 PLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIARAIVERNREQPMTRTKE 182

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L ++SF
Sbjct: 183 LAEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSIISF 241

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305
           HSLEDR+VK+F   +S        +  + A          +++ K  ++P +++VA N R
Sbjct: 242 HSLEDRIVKRFMREQSRGPQVPAGLPMTEAQLKKLGGRELRALGK--LMPGEKEVAENPR 299

Query: 306 SRSAKLRAGMRT 317
           +RS+ LR   RT
Sbjct: 300 ARSSVLRIAERT 311


>gi|323699047|ref|ZP_08110959.1| S-adenosyl-methyltransferase MraW [Desulfovibrio sp. ND132]
 gi|323458979|gb|EGB14844.1| S-adenosyl-methyltransferase MraW [Desulfovibrio desulfuricans
           ND132]
          Length = 326

 Score =  366 bits (940), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 118/318 (37%), Positives = 167/318 (52%), Gaps = 10/318 (3%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65
           M S        H  VLL +V+  L P PG   +D T G GG+S +  +    G+ ++ LD
Sbjct: 1   MKSGEVSPASLHTTVLLHEVVRWLQPRPGGRYMDGTLGMGGHSLALLEAAGEGAELVGLD 60

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGD 122
           RD  A++     +  +  +  LF   FS+ ++ + + G   +DG V DLGVSS+Q+D  D
Sbjct: 61  RDQEALALATRRLEPFAGRVHLFHLPFSRFEEALDEVGWERIDGAVLDLGVSSLQLDEAD 120

Query: 123 RGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF   GPLDMRM   SG SA ++VN     +L RI+ + GE+  A +IA AIV+ R+
Sbjct: 121 RGFSFIHDGPLDMRMDPDSGPSAEELVNTLKHGELARIIRVYGEDPLAGKIASAIVRERE 180

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNN--RIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
                 T  L+ +++        +  R HPATR+FQ LRI VN E EEL   L +    L
Sbjct: 181 KGAITRTLQLAEIVRLAYPPKMRHTARNHPATRTFQGLRIAVNRETEELEHYLATIVGRL 240

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQE 298
           K G  L ++SFHSLEDR VK  F   +       H +  +       + +T+K V  +  
Sbjct: 241 KPGARLAIISFHSLEDRAVKHAFRDAAKGCKCPPHQLHCTCGGVPEMKVLTRKPVAASDA 300

Query: 299 DVAFNRRSRSAKLRAGMR 316
           +   N R+RSAKLR   R
Sbjct: 301 ERDANPRARSAKLRVAER 318


>gi|220927929|ref|YP_002504838.1| S-adenosyl-methyltransferase MraW [Clostridium cellulolyticum H10]
 gi|263447445|sp|B8I6G6|RSMH_CLOCE RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|219998257|gb|ACL74858.1| S-adenosyl-methyltransferase MraW [Clostridium cellulolyticum H10]
          Length = 313

 Score =  366 bits (940), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 114/310 (36%), Positives = 165/310 (53%), Gaps = 11/310 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
            H  VLL++ I  LN     + +D T G  G+S    K       ++ LD+D FAV    
Sbjct: 4   KHTSVLLDECIEYLNINQEGIYVDGTIGGAGHSSEIYKRLGEKGCLVGLDQDSFAVETSI 63

Query: 76  ETMRDYKEQ--FSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           + + + K    F +    F  ++     +    VDG++ DLGVSS Q+D   RGFS+Q  
Sbjct: 64  KRLDEIKSNADFKVVNTNFKNIKSACSGLGINEVDGILLDLGVSSHQLDEASRGFSYQHD 123

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM+  S +SA DVVN+ + +D+ RI+   GEEK ASRIA  I + RQ+ P +TT 
Sbjct: 124 APLDMRMNTKSELSAYDVVNKYSEQDIYRIIRDFGEEKWASRIAKFITEARQNEPVETTY 183

Query: 190 DLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           DL  +I+K V   ++ +  HPA R+FQA+RI VNNE+  L + +      LK GG L ++
Sbjct: 184 DLVDIIKKAVPSSARRDGPHPAKRTFQAIRIEVNNELGILNKTIEDCVDLLKRGGRLCII 243

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+VK  +              + +         I KK +V    ++  N R+R
Sbjct: 244 TFHSLEDRIVKMQYNKMVNPCTCPPAFPVCACGKKPKAVLINKKPIVSDIRELDKNPRAR 303

Query: 308 SAKLRAGMRT 317
           SAKLR   + 
Sbjct: 304 SAKLRVLQKI 313


>gi|37527526|ref|NP_930870.1| S-adenosyl-methyltransferase MraW [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|42559441|sp|Q7N139|RSMH_PHOLL RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|36786961|emb|CAE16035.1| S-adenosyl-methyltransferase MraW [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 314

 Score =  366 bits (940), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 120/320 (37%), Positives = 175/320 (54%), Gaps = 19/320 (5%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPF 69
           + ++   H  VLL++ +  LN     + +D TFG GG+SR           +IA+DRDP 
Sbjct: 1   MANSHFKHTSVLLDEAVNGLNIRENGIYIDGTFGRGGHSRLILSQLGTEGRLIAIDRDPQ 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGF 125
           A+   +        +FS+    FS+L  Y    G    +DGV+ DLGVSS Q+D  +RGF
Sbjct: 61  AIEVAK---AITDPRFSIVHGPFSKLAHYTEKAGLIGKIDGVLLDLGVSSPQLDDPERGF 117

Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF + GPLDMRM  + G SA++ +  A   D+  +L   GEE+ A RIA AIV   Q  P
Sbjct: 118 SFMRDGPLDMRMDPTRGQSAAEWLMNATADDIAWVLKTFGEERFAKRIARAIVACNQEEP 177

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
              T+ L+ LI +     + ++ HPAT+SFQA+RI++N+E+EE+ Q L  A + L   G 
Sbjct: 178 ITRTKALADLIAQASPIKEKHK-HPATKSFQAIRIYINSELEEIEQALEGALQVLAPQGR 236

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQED 299
           L V+SFHSLEDR+VK+F    S        +  +            +SI K  + P++E+
Sbjct: 237 LSVISFHSLEDRIVKRFIRQNSRGPQVPAGLPLTEEQLKARGGRSLKSIGK--MKPSEEE 294

Query: 300 VAFNRRSRSAKLRAGMRTVE 319
           VA N R+RS+ LR   +  E
Sbjct: 295 VADNPRARSSVLRFAEKVSE 314


>gi|227535245|ref|ZP_03965294.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Lactobacillus paracasei subsp. paracasei ATCC 25302]
 gi|227187129|gb|EEI67196.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Lactobacillus paracasei subsp. paracasei ATCC 25302]
          Length = 313

 Score =  366 bits (940), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 111/311 (35%), Positives = 160/311 (51%), Gaps = 10/311 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73
           T   H  VLL++  A L   P    +DAT G GG++R          +IA D+D  A++ 
Sbjct: 2   TEFKHETVLLKEATAALAVKPAGTYVDATLGRGGHTRQILNQLTTGRLIAFDQDEAAIAT 61

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
                    +Q +L    F  L D +   G   VDG+++DLGVSS Q D   RGFS++  
Sbjct: 62  VTADFGTLPKQLTLVHRNFRDLTDALTTLGITEVDGILYDLGVSSPQFDDSKRGFSYRFD 121

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM     + A  +VN+    DL RI    GEE  + +IA  I + R   P  TT 
Sbjct: 122 APLDMRMDQRQTLDAKTIVNEWPYADLVRIFSRYGEEHFSKQIARRIEQARTVQPITTTF 181

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L  LI+  +    +    HPA + FQA+RI VN+E+  L   L  A K +  GG + V+
Sbjct: 182 QLVELIKAGIPAKARRTGGHPAKKVFQAIRIAVNDELSALESSLEQALKLINVGGRISVI 241

Query: 249 SFHSLEDRLVKKFFASRS--GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           +F SLEDRLVK  F   S    V     +IP++A P  ++ + +K ++P++E++  N R+
Sbjct: 242 TFQSLEDRLVKTMFKEVSSVQDVPRGLPVIPASAQPN-YRLVNRKPILPSEEELTVNHRA 300

Query: 307 RSAKLRAGMRT 317
            SAKLR   + 
Sbjct: 301 HSAKLRVIEKI 311


>gi|154252855|ref|YP_001413679.1| S-adenosyl-methyltransferase MraW [Parvibaculum lavamentivorans
           DS-1]
 gi|262824741|sp|A7HVT9|RSMH_PARL1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|154156805|gb|ABS64022.1| S-adenosyl-methyltransferase MraW [Parvibaculum lavamentivorans
           DS-1]
          Length = 339

 Score =  366 bits (940), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 147/335 (43%), Positives = 207/335 (61%), Gaps = 6/335 (1%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSNVIALDRD 67
           MS    ++   H+PV+L  V+ +L P  G V +D TFGAGGY+R+        V+A+DRD
Sbjct: 1   MSDNGQNSASPHIPVMLADVLDVLKPRDGGVYVDGTFGAGGYTRAILGSADCAVLAIDRD 60

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRG 124
           P A+  G+    ++  + +L +  F  ++  V + G   VDGVV D+GVSSMQ+D  +RG
Sbjct: 61  PTAILRGRALATEFAGRLTLIEGRFGDMKRLVRELGHGTVDGVVLDIGVSSMQLDQAERG 120

Query: 125 FSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           FSFQ+ GPLDMRM   G SA+DVVN  +  DL RI+ + GEEK+A  +A AIV  RQ+A 
Sbjct: 121 FSFQQDGPLDMRMGGEGPSAADVVNHFDEADLARIIAVYGEEKRARAVARAIVAARQTAE 180

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
              T +L+ L+   ++    +RIHPATR+FQALRIFVN+E+ ELA+GL  AE  L  GG 
Sbjct: 181 LHRTLELADLVASVIHRKPQDRIHPATRTFQALRIFVNDELGELARGLSGAEDLLHEGGR 240

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFN 303
           L VV+FHSLEDR+VK+F  +R+G+       +P        F+ I  K +  ++E+V  N
Sbjct: 241 LAVVAFHSLEDRIVKRFLTARTGRAGRANRYMPERDEVAPSFREIAHKAMKASEEEVEIN 300

Query: 304 RRSRSAKLRAGMRTVERSIE-DDSFVHLPRLPTLS 337
            R+RSAKLRA  RT   ++  D + +    +PTL 
Sbjct: 301 VRARSAKLRAAERTAAPALPLDLAALGFRAVPTLD 335


>gi|293391350|ref|ZP_06635684.1| S-adenosyl-methyltransferase MraW [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951884|gb|EFE02003.1| S-adenosyl-methyltransferase MraW [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 322

 Score =  366 bits (940), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 123/325 (37%), Positives = 177/325 (54%), Gaps = 20/325 (6%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M+     +  +H+ VLL + +  L      + +D TFG GG+SR           +IA+D
Sbjct: 1   MTHLNTFSSTEHLTVLLHETVDGLALKENGIYIDGTFGRGGHSRLILSQLSVNGKLIAID 60

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCG 121
           RDP AV+  Q+       +F +   TFS++       G    VDG++ DLGVSS Q+D  
Sbjct: 61  RDPQAVAEAQKI---QDPRFHIEHNTFSEILPICEKFGLVGKVDGILLDLGVSSPQLDDA 117

Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF K GPLDMRM  S GISA++ + Q + +DL  +L   GEE+ A RIA  IV   
Sbjct: 118 ERGFSFMKDGPLDMRMDSSKGISAAEWLAQVSEQDLAWVLKTFGEERFAKRIAKVIVDYN 177

Query: 181 QSAP------FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234
           +SA          T  L+ LI + V F K+   HPATRSFQA+RI++N E++EL   L+S
Sbjct: 178 KSAVQNGGEFLARTLQLAELIAQAVPF-KDKYKHPATRSFQAIRIYINAELDELENVLQS 236

Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ--SITKKV 292
           A   L   G L V+SFHSLEDR+VK+F   +S   +  + +          +   +  K 
Sbjct: 237 ALSVLAPKGRLSVISFHSLEDRMVKQFMRKQSQGEVIPKGLPLREDQIQRNRRLKVIGKA 296

Query: 293 VVPTQEDVAFNRRSRSAKLRAGMRT 317
           ++P++ ++  N R+RSA LR   R 
Sbjct: 297 IMPSEAEIVQNPRARSAVLRVAERI 321


>gi|291296375|ref|YP_003507773.1| S-adenosyl-methyltransferase MraW [Meiothermus ruber DSM 1279]
 gi|290471334|gb|ADD28753.1| S-adenosyl-methyltransferase MraW [Meiothermus ruber DSM 1279]
          Length = 283

 Score =  366 bits (940), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 123/302 (40%), Positives = 171/302 (56%), Gaps = 28/302 (9%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETM 78
           +H PVL  + +  L+  PG + +DAT G  G++R   + G  V+A D+DP A++  Q   
Sbjct: 2   NHTPVLYHEALDWLSIRPGGLYVDATLGGAGHTRGILERGGQVVAFDQDPAAIARAQAL- 60

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
                  +L QA F +L   +  +G   VDG++ DLGVSS  +D   RGFS+Q  GPLDM
Sbjct: 61  --GLPNLTLIQANFRELVPELAKRGTPQVDGLLADLGVSSFHLDDAGRGFSYQHEGPLDM 118

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RM    ++A +VVN    + L  IL   GEE +A RIA  IV+ R   P  TT  L+ +I
Sbjct: 119 RMGQGELTAHEVVNTYPEEALAEILFRYGEEPRARRIARFIVEHR---PIHTTTQLAEVI 175

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           ++   F   +  HPA +SFQALRI++N+E+  L Q LRSAE  LK GG L+V+SFHSLED
Sbjct: 176 RRATGF--RSAGHPARKSFQALRIYINDELGALEQLLRSAEAVLKPGGRLVVISFHSLED 233

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           RLVK F    +                   +S+TKK +VP++ +   N R+RSAK+R   
Sbjct: 234 RLVKHFLRESTA-----------------LRSLTKKPIVPSEAEQRENPRARSAKMRVAE 276

Query: 316 RT 317
           R 
Sbjct: 277 RI 278


>gi|253689961|ref|YP_003019151.1| S-adenosyl-methyltransferase MraW [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|262824751|sp|C6DEV1|RSMH_PECCP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|251756539|gb|ACT14615.1| S-adenosyl-methyltransferase MraW [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 314

 Score =  366 bits (939), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 118/311 (37%), Positives = 180/311 (57%), Gaps = 18/311 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H  VLL++ +  LN   G + +D TFG GG+SR           ++A+DRDP A+   +
Sbjct: 6   KHTTVLLDEAVNGLNIRSGGIYIDGTFGRGGHSRLILSQLGPEGRLLAIDRDPQAIEAAK 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +FS+    FS + +YV + G    +DGV+ DLGVSS Q+D  +RGFSF + G
Sbjct: 66  ---AIDDPRFSIIHGPFSAMAEYVAELGLTGQIDGVLLDLGVSSPQLDDPERGFSFMRDG 122

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + G+SA++ + +A   D+  +L   GEE+ A RIA AIV+R ++ P   T++
Sbjct: 123 PLDMRMDPTRGLSAAEWLMKAEADDIVWVLKTFGEERFAKRIARAIVERNRTEPMTRTKE 182

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ LI       + ++ HPATRSFQA+RI++N+E+EE+ + L  A   L   G L V+SF
Sbjct: 183 LAELIAAASPVREKHK-HPATRSFQAIRIYINSELEEIERALEGALSVLAPQGRLSVISF 241

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNRR 305
           HSLEDR+VK+F   +S        +  +            +++ KK ++P++ +VA N R
Sbjct: 242 HSLEDRIVKRFIRHQSRGPQVPAGLPLTEEQLRSQGGQTLKAVGKK-LMPSEAEVAENPR 300

Query: 306 SRSAKLRAGMR 316
           +RS+ LR   R
Sbjct: 301 ARSSVLRFAER 311


>gi|303235618|ref|ZP_07322225.1| S-adenosyl-methyltransferase MraW [Prevotella disiens FB035-09AN]
 gi|302484065|gb|EFL47053.1| S-adenosyl-methyltransferase MraW [Prevotella disiens FB035-09AN]
          Length = 310

 Score =  366 bits (939), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 111/307 (36%), Positives = 167/307 (54%), Gaps = 14/307 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC--G 74
           HVPVLL++ I  LN  P  V +D TFG GG+S+          ++ + D+D  A     G
Sbjct: 9   HVPVLLKESIDGLNINPDGVYVDVTFGGGGHSKEILSRLSKKGHLYSFDQDADAEQNIKG 68

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
              +    E F+  ++ F  L++++   GV   DG++ DLGVSS   D  +RGFSF+   
Sbjct: 69  INNIEKL-ENFTFVRSNFRYLKNWLRYYGVEQIDGLLGDLGVSSHHFDDEERGFSFRFDA 127

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+  +G +A+D++ Q   +DL  +  + GE K + +IA AIV  R++ P  TT+D
Sbjct: 128 PLDMRMNKRAGKTAADILLQYEEEDLANMFYLYGELKNSRKIAAAIVNSRKTKPILTTKD 187

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             S+++    F +        + FQALRI VN E+  L + L  A + LK  G L V+++
Sbjct: 188 FQSVVEPL--FKREREKKEMAKLFQALRIEVNQEMAALKEMLIGASEVLKPNGRLSVITY 245

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDR+VK    + + +    +        P  F+ I  KV+VP+Q +   N RSRSAK
Sbjct: 246 HSLEDRIVKNIMKTGNIEGKVEQDFFGKINSP--FKLINNKVIVPSQSEQKENPRSRSAK 303

Query: 311 LRAGMRT 317
           LR   + 
Sbjct: 304 LRIAEKI 310


>gi|311280938|ref|YP_003943169.1| S-adenosyl-methyltransferase MraW [Enterobacter cloacae SCF1]
 gi|308750133|gb|ADO49885.1| S-adenosyl-methyltransferase MraW [Enterobacter cloacae SCF1]
          Length = 313

 Score =  366 bits (939), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 117/312 (37%), Positives = 177/312 (56%), Gaps = 19/312 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A +   
Sbjct: 6   KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGAEGRLLAIDRDPEATAVAN 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +FS+    FS L DY  ++     +DG++ DLGVSS Q+D  +RGFSF + G
Sbjct: 66  TI---DDPRFSIVHGPFSALADYAAERSLTGKIDGILLDLGVSSPQLDDAERGFSFMRDG 122

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + G SA++ +  A+  D+  ++   GEE+   RIA AIV+R +  P   T++
Sbjct: 123 PLDMRMDPTRGQSAAEWLQTADEADIAWVIKTFGEERFGKRIARAIVERNRIEPMTRTKE 182

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ +I       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L ++SF
Sbjct: 183 LAEVIAAATPV-KDKHKHPATRTFQAVRIWVNSELEEIEQALKSSLDVLAPGGRLSIISF 241

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNRR 305
           HSLEDR+VK+F   +S        +  +            +++ K  ++P +E+VA N R
Sbjct: 242 HSLEDRIVKRFMREQSRGPQVPAGLPMTEEQLRKLGGRQLRALGK--LMPGEEEVAENPR 299

Query: 306 SRSAKLRAGMRT 317
           +RS+ LR   RT
Sbjct: 300 ARSSVLRIAERT 311


>gi|255262076|ref|ZP_05341418.1| S-adenosyl-methyltransferase MraW [Thalassiobium sp. R2A62]
 gi|255104411|gb|EET47085.1| S-adenosyl-methyltransferase MraW [Thalassiobium sp. R2A62]
          Length = 326

 Score =  366 bits (939), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 154/327 (47%), Positives = 203/327 (62%), Gaps = 9/327 (2%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV-IALDRD 67
           +++A       H+PVLL  ++    P  G+  LD TFGAGGY+R     G++V   +DRD
Sbjct: 2   VAAASSPNDAPHIPVLLRPLLVACAPVSGR-WLDGTFGAGGYTRGLIDDGADVVYGVDRD 60

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
           P A       + +Y ++  L + TFS L  Y  D  +DGVV DLGVSSMQ+D  +RGFSF
Sbjct: 61  PLAFDMAAPWVGEYGDKIKLVEGTFSALDTYADD--LDGVVLDLGVSSMQLDLAERGFSF 118

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
            + GPLDMRMS SG SA+D+VN A+   L  IL   GEE+ + RIA AIVK R   P  T
Sbjct: 119 MRDGPLDMRMSQSGPSAADIVNNADETALANILYDFGEERASRRIARAIVKAR---PLNT 175

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T +L+++I+  +   K N+ HPATRSFQA+RI VN+E  ELA+GL +AE+ALK GGLL V
Sbjct: 176 TLELAAVIESCLPRPKPNQSHPATRSFQAIRIAVNDEYGELAEGLMAAERALKPGGLLAV 235

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPS-NAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           VSFHS+EDR+VK+F   R+GK        P   A  A F+ +T+K V P  +++  N RS
Sbjct: 236 VSFHSVEDRMVKRFMQERAGKTGRGSRYAPETEAIEAAFEIVTRKAVGPDDDELQENPRS 295

Query: 307 RSAKLRAGMRTVERSIE-DDSFVHLPR 332
           RSAKLR   RT   S E D   + +P 
Sbjct: 296 RSAKLRVARRTDAPSGEIDRKTIGMPG 322


>gi|256384076|gb|ACU78646.1| S-adenosyl-methyltransferase MraW [Mycoplasma mycoides subsp. capri
           str. GM12]
 gi|256384908|gb|ACU79477.1| S-adenosyl-methyltransferase MraW [Mycoplasma mycoides subsp. capri
           str. GM12]
 gi|296455289|gb|ADH21524.1| S-adenosyl-methyltransferase MraW [synthetic Mycoplasma mycoides
           JCVI-syn1.0]
          Length = 308

 Score =  366 bits (939), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 103/310 (33%), Positives = 164/310 (52%), Gaps = 15/310 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
            H+PVLL++ I  LN  P  + +D T G  G+S    K  +    + A+D+D  A+   +
Sbjct: 3   KHIPVLLKESIEYLNIKPDGIYVDCTLGRAGHSSEILKKLNQKGFLYAIDQDQIAIDQAK 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E +      F L Q  FS L   +       VDG+++DLGVSS QID   RGFS++  GP
Sbjct: 63  EKLEQINNNFLLIQGNFSNLSALLAINHVFNVDGILYDLGVSSPQIDIASRGFSYKMDGP 122

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  +  ++A  V+N  +   ++ IL   GEE  +  I+  IV+ R   P  +T +L
Sbjct: 123 LDMRMDLNSTLTAHQVINTYSESQISEILFKYGEESFSKSISKKIVESR---PINSTLEL 179

Query: 192 SSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+  +       + HPA ++FQALRI++NNE+  L   L+ A   L +   + V++F
Sbjct: 180 VEIIKSVLPQKVLKQKKHPAKKTFQALRIYINNELIALENSLKQALDLLNSKARICVITF 239

Query: 251 HSLEDRLVKKFF---ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           HSLE+++VK  F    +   + +     I +N + + F+ + KK + P+  ++  N RS 
Sbjct: 240 HSLEEKIVKNIFNNSTNYYQEQLLSNLPIKANLN-SKFKLVIKKPIKPSLLELEQNHRSH 298

Query: 308 SAKLRAGMRT 317
           SAKL    + 
Sbjct: 299 SAKLWVIEKN 308


>gi|259907409|ref|YP_002647765.1| S-adenosyl-methyltransferase MraW [Erwinia pyrifoliae Ep1/96]
 gi|224963031|emb|CAX54514.1| S-adenosyl-methyltransferase MraW [Erwinia pyrifoliae Ep1/96]
 gi|283477242|emb|CAY73151.1| S-adenosyl methionine adenyltransferase [Erwinia pyrifoliae DSM
           12163]
          Length = 313

 Score =  366 bits (939), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 123/317 (38%), Positives = 182/317 (57%), Gaps = 19/317 (5%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAV 71
                H  VLL++ +  LN  P  + +D TFG GG+SR           + A+DRDP A+
Sbjct: 2   QDTFKHTTVLLDEAVNGLNIKPDGIYIDGTFGRGGHSRLILSQLGEHGRLFAIDRDPQAI 61

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSF 127
           +   E       +F++    FS L +Y   +G    +DG++ DLGVSS Q+D  +RGFSF
Sbjct: 62  AAAAEI---TDPRFTIIHGPFSALAEYAEQRGLTGKIDGILLDLGVSSPQLDDAERGFSF 118

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
            + GPLDMRM  + G+SA++ + +A   D++ +L   GEE+ A RIA AIV+R +  P  
Sbjct: 119 MRDGPLDMRMDPTRGLSAAEWLLKAEESDISFVLKTFGEERFARRIARAIVERNREQPMT 178

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
            T++L+ +I       K+   HPATRSFQA+RI+VN+E+EE+ Q L+ A  AL AGG L 
Sbjct: 179 RTKELADVIYAATPV-KDKFKHPATRSFQAIRIWVNSELEEIEQALKGALSALAAGGRLS 237

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVA 301
           V+SFHSLEDR+VK+F   +S        +  + A          +++ K  ++P + +VA
Sbjct: 238 VISFHSLEDRIVKRFMREQSRGPQVPHGLPMTEAQLSSMGGRQLKALGK--MMPGESEVA 295

Query: 302 FNRRSRSAKLRAGMRTV 318
            N R+RS+ LR   RT 
Sbjct: 296 DNPRARSSVLRIAERTA 312


>gi|163782688|ref|ZP_02177685.1| hypothetical protein HG1285_17430 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882261|gb|EDP75768.1| hypothetical protein HG1285_17430 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 289

 Score =  366 bits (939), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 123/306 (40%), Positives = 182/306 (59%), Gaps = 24/306 (7%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76
            H PVLLE+   LL    G++ LD T G GG+++   +      VI +DRD  A+   +E
Sbjct: 1   MHTPVLLEESTDLLLENSGELYLDCTLGLGGHTKRILEKNPQAFVIGIDRDEEAIEIAKE 60

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +++++ + ++++A F+ L + +  +GV   DG++ DLGVS  Q+   +RGFSFQ   PL
Sbjct: 61  NLKEFEGRIAIYKADFADLDEVLRAEGVERVDGILLDLGVSMFQLK-SERGFSFQIDAPL 119

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     ++A  VVN+ + K+L RIL   GEE+ + +IA AIV+ R+  P +TT++L+
Sbjct: 120 DMRMDKDQKLTAYKVVNEYSEKELARILWEYGEERLSRKIARAIVQHRREKPIETTKELA 179

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            L+        ++ R HPAT++FQA+RI VN E+E L   L      L   G L+V+SFH
Sbjct: 180 ELVSSLYPARMRHGRTHPATKTFQAIRIEVNRELESLKTALGKTPDLLNPKGRLVVISFH 239

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+VK FF  RS                  F+ +TKK ++P+QE++A N  SRSAKL
Sbjct: 240 SLEDRIVKNFFRDRSDA----------------FRILTKKPIIPSQEEIAMNPASRSAKL 283

Query: 312 RAGMRT 317
           RAG R 
Sbjct: 284 RAGERI 289


>gi|157147494|ref|YP_001454813.1| S-adenosyl-methyltransferase MraW [Citrobacter koseri ATCC BAA-895]
 gi|263446032|sp|A8ALL4|RSMH_CITK8 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|157084699|gb|ABV14377.1| hypothetical protein CKO_03293 [Citrobacter koseri ATCC BAA-895]
          Length = 314

 Score =  366 bits (939), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 120/312 (38%), Positives = 180/312 (57%), Gaps = 19/312 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++  Q
Sbjct: 7   KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSRLGEEGRLLAIDRDPQAIAEAQ 66

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +FS+    FS L DYV ++     +DG++ DLGVSS Q+D  +RGFSF + G
Sbjct: 67  ---AINDPRFSIIHGPFSALADYVSERELIGKIDGILLDLGVSSPQLDDAERGFSFMRDG 123

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   T++
Sbjct: 124 PLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIARAIVERNREQPMTRTKE 183

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L ++SF
Sbjct: 184 LAEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSIISF 242

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305
           HSLEDR+VK+F   +S        +  +            +++ K  ++P +E+VA N R
Sbjct: 243 HSLEDRIVKRFMREQSRGPQVPAGLPMTEEQLKKLGGRELRALGK--LMPGEEEVAENPR 300

Query: 306 SRSAKLRAGMRT 317
           +RS+ LR   RT
Sbjct: 301 ARSSVLRIAERT 312


>gi|256827376|ref|YP_003151335.1| S-adenosyl-methyltransferase MraW [Cryptobacterium curtum DSM
           15641]
 gi|256583519|gb|ACU94653.1| S-adenosyl-methyltransferase MraW [Cryptobacterium curtum DSM
           15641]
          Length = 321

 Score =  366 bits (939), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 114/322 (35%), Positives = 179/322 (55%), Gaps = 16/322 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALD 65
           MS+  +     H+PVLL + +  L    G+  +DAT G  G+S    K       ++ +D
Sbjct: 1   MSAVTNE--YRHIPVLLTECLDYLRLETGRTYVDATLGGAGHSIEAAKHIQTAGTLVGID 58

Query: 66  RDPFAVSCGQETM----RDYKEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQI 118
           +D  A++  +  +     D + +  L +  F  + + +       VD  +FDLGVSS+QI
Sbjct: 59  QDEVALTAARTRLLALPTDKRPELCLLRGNFGDMDELLLQADIPSVDAFLFDLGVSSVQI 118

Query: 119 DCGDRGFSFQKSGPLDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
           D   RGFSF++  PLDMRM    S ++A++++N  N  DL RI+    +E+ A+RIA  I
Sbjct: 119 DTPSRGFSFKEKAPLDMRMDPGKSTLTAAEIINTYNAADLARIIRTYSDERWATRIADFI 178

Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           V+ R  A  +T+  L  +I+  +   ++ +  HPA R+FQALRI VN+E++ L QGL +A
Sbjct: 179 VQARTHARIETSDQLVDIIKAAIPASARRSGGHPAKRTFQALRIEVNSELDVLQQGLEAA 238

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVV 294
            + L  GG L V+S+HSLEDR+VK+ F   S          +    +  + + IT+K V+
Sbjct: 239 IRWLAPGGRLAVISYHSLEDRIVKETFLRFSRGCTCPPDLPVCVCGNVPIIKVITRKPVL 298

Query: 295 PTQEDVAFNRRSRSAKLRAGMR 316
           PT E++  N R+RSAKLR   +
Sbjct: 299 PTPEEIERNPRARSAKLRVAEK 320


>gi|315125595|ref|YP_004067598.1| S-adenosyl-methyltransferase MraW [Pseudoalteromonas sp. SM9913]
 gi|315014108|gb|ADT67446.1| S-adenosyl-methyltransferase MraW [Pseudoalteromonas sp. SM9913]
          Length = 312

 Score =  366 bits (939), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 123/308 (39%), Positives = 182/308 (59%), Gaps = 13/308 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
           +HV VL+++ I  L   P  + +D TFG GG+S            + A+D+DP A+    
Sbjct: 6   EHVSVLMDETIDALAIKPDGIYMDGTFGRGGHSGQILARLGESGRLQAIDQDPQAIKSA- 64

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           E   D   +FS+  + FS+L +          VDG++ D+GVSS Q+D   RGFSF K G
Sbjct: 65  EKFAD-DPRFSIAHSRFSKLYEVAEQNDLIGQVDGILLDIGVSSPQLDDAARGFSFMKDG 123

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  S G SA+  + +A + D+T ++  LGEEK   RIAH I++ R+  P  TT+ 
Sbjct: 124 PLDMRMDPSTGRSAAQWLAEAELDDITHVIKKLGEEKFGKRIAHKILEVREHTPITTTKQ 183

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ L+ + V   K+   HPATR+FQA+RI++N+E+EE+   L++A K LK GG L+V+SF
Sbjct: 184 LADLVDEAVPV-KDKFKHPATRTFQAIRIYINSELEEIQTALQAAIKVLKPGGRLVVISF 242

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI--TKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+VK+F   +S      R +  ++A      ++    K + P+ ++VA N RSRS
Sbjct: 243 HSLEDRIVKQFIKKQSKGEAIPRGLPLTDAQINKNLTLKAVGKAIKPSADEVARNPRSRS 302

Query: 309 AKLRAGMR 316
           + LR   R
Sbjct: 303 SVLRIAQR 310


>gi|310765090|gb|ADP10040.1| S-adenosyl-methyltransferase MraW [Erwinia sp. Ejp617]
          Length = 313

 Score =  366 bits (939), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 123/317 (38%), Positives = 182/317 (57%), Gaps = 19/317 (5%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAV 71
                H  VLL++ +  LN  P  + +D TFG GG+SR           + A+DRDP A+
Sbjct: 2   QDTFKHTTVLLDEAVNGLNIKPDGIYIDGTFGRGGHSRLILSQLGEHGRLFAIDRDPQAI 61

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSF 127
           +   E       +F++    FS L +Y   +G    +DG++ DLGVSS Q+D  +RGFSF
Sbjct: 62  AAAAEI---TDPRFTIIHGPFSALAEYAEQRGLTGKIDGILLDLGVSSPQLDDAERGFSF 118

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
            + GPLDMRM  + G+SA++ + +A   D++ +L   GEE+ A RIA AIV+R +  P  
Sbjct: 119 MRDGPLDMRMDPTRGLSAAEWLLKAEESDISFVLKTFGEERFARRIARAIVERNREQPMT 178

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
            T++L+ +I       K+   HPATRSFQA+RI+VN+E+EE+ Q L+ A  AL AGG L 
Sbjct: 179 RTKELADVIYAATPV-KDKFKHPATRSFQAIRIWVNSELEEIEQALKGALSALAAGGRLS 237

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVA 301
           V+SFHSLEDR+VK+F   +S        +  + A          +++ K  ++P + +VA
Sbjct: 238 VISFHSLEDRIVKRFMREQSRGPQVPHGLPMTEAQLSSMGGRQLKALGK--MMPGESEVA 295

Query: 302 FNRRSRSAKLRAGMRTV 318
            N R+RS+ LR   RT 
Sbjct: 296 DNPRARSSVLRIAERTA 312


>gi|269123556|ref|YP_003306133.1| S-adenosyl-methyltransferase MraW [Streptobacillus moniliformis DSM
           12112]
 gi|268314882|gb|ACZ01256.1| S-adenosyl-methyltransferase MraW [Streptobacillus moniliformis DSM
           12112]
          Length = 309

 Score =  366 bits (939), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 104/305 (34%), Positives = 173/305 (56%), Gaps = 10/305 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H+PVL ++V+  +      + +D T G GG+S          S +IA+D+D  A+    E
Sbjct: 4   HLPVLYDEVLENIIDKKDLIYMDCTLGGGGHSEGILSNSTDNSKLIAIDQDENAIKYASE 63

Query: 77  TMRDYKEQFSLFQATFSQLQ--DYVPDK-GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++ +  + S+F+  F  L    Y+     VD ++ D+GVSS Q+D   RGFS++K   L
Sbjct: 64  RLKKFGNKVSIFKNNFENLDIVAYLAGFDKVDRILMDIGVSSKQLDDDKRGFSYRKEAKL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  S  +SA +V+N    +++  IL   GEE ++ RIA  IV+ R++   +TT +L+
Sbjct: 124 DMRMDESQKLSAYEVINNYKEEEIADILYKYGEEPKSRRIAKYIVEYRKNKSIETTIELA 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            ++ K +   K+ + HPA R+FQA+RI+VN E+E L + L  + + L  GG L+V++FHS
Sbjct: 184 DIVIKAI--GKSMKKHPAKRTFQAIRIYVNRELEVLEKALDKSIELLNPGGRLLVITFHS 241

Query: 253 LEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK+ F              I    + +  + +T+K +V  ++++  N R+ SAKL
Sbjct: 242 LEDRIVKEKFRKYENPCTCPYDLPICKCGNKSKGKVLTRKPIVSKEKELEANNRAHSAKL 301

Query: 312 RAGMR 316
           R  ++
Sbjct: 302 RVFIK 306


>gi|83648530|ref|YP_436965.1| S-adenosyl-methyltransferase MraW [Hahella chejuensis KCTC 2396]
 gi|123530830|sp|Q2S9Y4|RSMH_HAHCH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|83636573|gb|ABC32540.1| S-adenosyl-methyltransferase MraW [Hahella chejuensis KCTC 2396]
          Length = 309

 Score =  365 bits (938), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 116/304 (38%), Positives = 172/304 (56%), Gaps = 10/304 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           HV VLL + +  L      + +D TFG GG+S    K       ++ +D+DP A     E
Sbjct: 8   HVTVLLAEAVEALGVKADGLYIDGTFGRGGHSAEILKALGPQGRLLGIDKDPRARRTAME 67

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                 ++F   Q +F+ +  +V +    GVDGV+ DLGVSS Q+D  +RGFSF + GPL
Sbjct: 68  RFSG-DDRFLFRQGSFADMASFVSELQWPGVDGVLLDLGVSSPQLDEAERGFSFMQDGPL 126

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM   SG+SAS+ VN A  ++++++L  LGEE+ A R+A AIV  RQ+ P   T  L+
Sbjct: 127 DMRMDPDSGLSASEWVNTAKEEEISKVLWDLGEERFARRMAKAIVAARQTQPITRTLQLA 186

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            ++            +PATR+FQA+RIF+N E+++LAQGL  A   LK GG L V+SFHS
Sbjct: 187 EIVAAANP-RWEKGKNPATRAFQAIRIFINRELDDLAQGLEQAFGVLKPGGRLTVISFHS 245

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK++           + +   +  P   + + KK +   + +V  N R+RSA +R
Sbjct: 246 LEDRMVKQYMRDIVRGPKTPKWLPVVDDAPPKAKLVGKK-IRAGETEVVANVRARSAVMR 304

Query: 313 AGMR 316
              +
Sbjct: 305 VLEK 308


>gi|212697080|ref|ZP_03305208.1| hypothetical protein ANHYDRO_01645 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675855|gb|EEB35462.1| hypothetical protein ANHYDRO_01645 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 306

 Score =  365 bits (938), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 116/306 (37%), Positives = 164/306 (53%), Gaps = 12/306 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H  VLL + I  LN     +  D T G GG+S+   K  S    +I LD+D  A+   +E
Sbjct: 5   HKSVLLNETIKNLNIKEDGIYADLTLGKGGHSKEILKNLSPEGLLIGLDQDKDAIKAARE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++D+      F   F ++ D +       +DG + D+GVSS QID GDRGFS+ K GPL
Sbjct: 65  NLKDF-SNVLFFNENFEKISDVLDKASLKMIDGALMDIGVSSYQIDNGDRGFSYMKDGPL 123

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  + ++A  +VN  ++ +L  I    GEE+ +  IA AIV  R+     TT  L 
Sbjct: 124 DMRMNKDNELTAKQIVNDYSLDELWEIFSKYGEERYSKTIAKAIVDYRKLHEINTTLQLR 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +++ K+V     N  HP  R FQALRI VN E+E L   L      L  GG L V++FHS
Sbjct: 184 NIVMKSVVT---NEAHPEKRVFQALRIEVNRELEVLENTLEKIVDRLNKGGRLCVITFHS 240

Query: 253 LEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK  F   S K +      +    H    + I+KK ++P+++++  NRRS SAKL
Sbjct: 241 LEDRIVKNKFKEMSKKCICPPEFPVCVCNHEKKVKIISKKPILPSKDELKTNRRSHSAKL 300

Query: 312 RAGMRT 317
           R   R 
Sbjct: 301 RVCERV 306


>gi|322713140|gb|EFZ04711.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 312

 Score =  365 bits (938), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 120/312 (38%), Positives = 181/312 (58%), Gaps = 19/312 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++  Q
Sbjct: 5   KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAQ 64

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +FS+    FS L DYV ++     +DG++ DLGVSS Q+D  +RGFSF + G
Sbjct: 65  TI---NDPRFSIIHGPFSALADYVAEREFTGKIDGILLDLGVSSPQLDDAERGFSFMRDG 121

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   T++
Sbjct: 122 PLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIARAIVERNREQPMTRTKE 181

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L ++SF
Sbjct: 182 LAEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSIISF 240

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305
           HSLEDR+VK+F   +S        +  + A          +++ K  ++P +++VA N R
Sbjct: 241 HSLEDRIVKRFMREQSRGPQVPAGLPMTEAQLKKLGGRELRALGK--LMPGEKEVAENPR 298

Query: 306 SRSAKLRAGMRT 317
           +RS+ LR   RT
Sbjct: 299 ARSSVLRIAERT 310


>gi|161507311|ref|YP_001577265.1| cell division protein MraW [Lactobacillus helveticus DPC 4571]
 gi|263458154|sp|A8YUN6|RSMH_LACH4 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|160348300|gb|ABX26974.1| Cell division protein MraW [Lactobacillus helveticus DPC 4571]
          Length = 315

 Score =  365 bits (938), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 104/311 (33%), Positives = 163/311 (52%), Gaps = 13/311 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76
            H  VLL + I  L P  G + +DATFG GG+++          ++  D+D +A+   + 
Sbjct: 4   KHTSVLLHETIDNLKPKNGGLYVDATFGGGGHAKYLLSKIETGTLVGFDQDEYAIKSAEL 63

Query: 77  TMRDY-----KEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSF 127
              D      + +  L    FS L+  +       G+DG+ +DLGVSS Q D  DRGFS+
Sbjct: 64  NFADLLQPDSEPRLKLVHDNFSNLEQDLVKLGYSDGIDGIYYDLGVSSPQFDQADRGFSY 123

Query: 128 QKSGPLDMRMSCSGIS-ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           + +  LDMRM  S  + A  +VN  + K+L  IL   G+EK + +IAH IV+RR+  P  
Sbjct: 124 RYNARLDMRMDQSQDTDAYQLVNTLSQKELADILYQYGDEKFSRQIAHRIVERRKDKPIV 183

Query: 187 TTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           TT +L  +I++ +   ++    HPA +SFQALR+ VN+E++ L   L  A + L+ GG +
Sbjct: 184 TTFELVDIIKEAIPAYARRTGGHPAKKSFQALRVAVNHELDVLQASLEEAIRILRPGGRI 243

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
            V++F S ED++VKK F   S   +        +      +   +K +  +  ++  N R
Sbjct: 244 SVITFQSHEDKIVKKIFKKYSEVEVPRGMPFVPDDMKPTLRLENRKPITASTSELENNNR 303

Query: 306 SRSAKLRAGMR 316
           S SAKLR   +
Sbjct: 304 SHSAKLRVAEK 314


>gi|84516398|ref|ZP_01003757.1| S-adenosyl-methyltransferase MraW [Loktanella vestfoldensis SKA53]
 gi|84509434|gb|EAQ05892.1| S-adenosyl-methyltransferase MraW [Loktanella vestfoldensis SKA53]
          Length = 326

 Score =  365 bits (938), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 148/326 (45%), Positives = 202/326 (61%), Gaps = 11/326 (3%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRD 67
           MS+A   T   H+PVL+  +IA + P    V LD TFG GGY+R+    G++ VIA+DRD
Sbjct: 1   MSAAADQT--PHIPVLIRPLIAAVGPVT-GVWLDGTFGNGGYTRALLAAGAHKVIAVDRD 57

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
           P A       + DY ++  + +  FSQL  Y  D  +DGVV DLGVSSMQ+D  +RGFSF
Sbjct: 58  PLAFQMAAGWVADYGDRIVMQEGVFSQLDTYAQD--LDGVVLDLGVSSMQLDLAERGFSF 115

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
            + GPLDMRMS SG+SA+D+ N A   +L  I+ + GEE+ + RIA AIV  R   P  T
Sbjct: 116 MRDGPLDMRMSQSGLSAADLCNDAEEAELADIIYLYGEERASRRIAKAIVAAR---PLTT 172

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T  L+ +++  +  +K N+ HPATR+FQALRI VNNE  ELA GL +AE+ALK GG L V
Sbjct: 173 TGQLAKIVESCLPRAKPNQSHPATRTFQALRIAVNNEYGELAMGLMAAERALKPGGQLAV 232

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRS 306
           V+FHS+EDR+ K+F  +RSG         P        F+   +K + P ++++A N RS
Sbjct: 233 VTFHSVEDRMAKRFLQARSGNNANANRYAPETTQVTPAFRIDKRKAIGPDEQELAENPRS 292

Query: 307 RSAKLRAGMRTVERSIE-DDSFVHLP 331
           RSAKLR  +RT   +   D + + +P
Sbjct: 293 RSAKLRVAIRTDAPAQSLDPADLGMP 318


>gi|262831458|sp|Q1J5F8|RSMH_STRPF RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 316

 Score =  365 bits (938), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 103/320 (32%), Positives = 169/320 (52%), Gaps = 15/320 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M+   H     HV VLL + + +L+  P  + +DAT G  G+S           ++   D
Sbjct: 1   MTKEFH-----HVTVLLHETVDMLDIKPNGIYVDATLGGSGHSAYLLSKLSEQGHLYCFD 55

Query: 66  RDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDC 120
           +D  A+   Q T++ Y  K Q +  +  F  L+  +   GVD   G+++DLGVSS Q+D 
Sbjct: 56  QDQKAIDNAQVTLKSYIDKGQVTFIKDNFRHLKARLTALGVDEIDGILYDLGVSSPQLDE 115

Query: 121 GDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS+++  PLDMRM    + +A +VVN     DL +I    GE+K + +IA  I + 
Sbjct: 116 RERGFSYKQDAPLDMRMDRQSLLTAYEVVNTYPFNDLVKIFFKYGEDKFSKQIARKIEQA 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R   P +TT +L+ LI+      +   + HPA + FQA+RI VN+E+    + ++ A + 
Sbjct: 176 RAIKPIETTTELAELIKAAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQDAMEL 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L   G + V++FHSLEDRL K+ F   S   +     +        F+ +++K ++P+  
Sbjct: 236 LALDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPLIPEDMKPTFELVSRKPILPSHS 295

Query: 299 DVAFNRRSRSAKLRAGMRTV 318
           ++  N+R+ SAKLR   +  
Sbjct: 296 ELTANKRAHSAKLRVAKKIR 315


>gi|16763510|ref|NP_459125.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|167550685|ref|ZP_02344442.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|167989993|ref|ZP_02571093.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168230399|ref|ZP_02655457.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168234884|ref|ZP_02659942.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168243465|ref|ZP_02668397.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168262195|ref|ZP_02684168.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168820886|ref|ZP_02832886.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194449989|ref|YP_002044090.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194469862|ref|ZP_03075846.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194735661|ref|YP_002113138.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197248687|ref|YP_002145106.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|198243393|ref|YP_002214072.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|200386674|ref|ZP_03213286.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205351459|ref|YP_002225260.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207855634|ref|YP_002242285.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224581963|ref|YP_002635761.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|238911177|ref|ZP_04655014.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|20139016|sp|Q8ZRU8|RSMH_SALTY RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262826349|sp|B5F7V6|RSMH_SALA4 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262826360|sp|B5FI64|RSMH_SALDC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262826371|sp|B5R2L6|RSMH_SALEP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262826385|sp|B5RH56|RSMH_SALG2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262826391|sp|B4TJ79|RSMH_SALHS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262826413|sp|C0Q5H8|RSMH_SALPC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262826460|sp|B4TXH0|RSMH_SALSV RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|16418619|gb|AAL19084.1| putative S-adenosyl methionine adenyltransferase [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|194408293|gb|ACF68512.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194456226|gb|EDX45065.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194711163|gb|ACF90384.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197212390|gb|ACH49787.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197292032|gb|EDY31382.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|197937909|gb|ACH75242.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199603772|gb|EDZ02317.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205271240|emb|CAR36028.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205324445|gb|EDZ12284.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205331448|gb|EDZ18212.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205335013|gb|EDZ21777.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205337535|gb|EDZ24299.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205342387|gb|EDZ29151.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205348778|gb|EDZ35409.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206707437|emb|CAR31710.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|224466490|gb|ACN44320.1| S-adenosyl-methyltransferase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|261245353|emb|CBG23142.1| S-adenosyl-methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267991798|gb|ACY86683.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301156748|emb|CBW16223.1| S-adenosyl-methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312911089|dbj|BAJ35063.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321222306|gb|EFX47378.1| rRNA small subunit methyltransferase H [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|323128440|gb|ADX15870.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|326621816|gb|EGE28161.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
 gi|326626486|gb|EGE32829.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
 gi|332987073|gb|AEF06056.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 313

 Score =  365 bits (938), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 120/312 (38%), Positives = 181/312 (58%), Gaps = 19/312 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++  Q
Sbjct: 6   KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAQ 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +FS+    FS L DYV ++     +DG++ DLGVSS Q+D  +RGFSF + G
Sbjct: 66  TI---NDPRFSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFMRDG 122

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   T++
Sbjct: 123 PLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIARAIVERNREQPMTRTKE 182

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L ++SF
Sbjct: 183 LAEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSIISF 241

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305
           HSLEDR+VK+F   +S        +  + A          +++ K  ++P +++VA N R
Sbjct: 242 HSLEDRIVKRFMREQSRGPQVPAGLPMTEAQLKKLGGRELRALGK--LMPGEKEVAENPR 299

Query: 306 SRSAKLRAGMRT 317
           +RS+ LR   RT
Sbjct: 300 ARSSVLRIAERT 311


>gi|77460902|ref|YP_350409.1| S-adenosyl-methyltransferase MraW [Pseudomonas fluorescens Pf0-1]
 gi|88909213|sp|Q3K736|RSMH_PSEPF RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|77384905|gb|ABA76418.1| S-adenosyl-methyltransferase [Pseudomonas fluorescens Pf0-1]
          Length = 315

 Score =  365 bits (938), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 117/308 (37%), Positives = 178/308 (57%), Gaps = 12/308 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
           +H+ VLL++ +  L   P    LD TFG GG+SR           +I  D+DP A++ G 
Sbjct: 8   NHITVLLDEAVEALAVRPDGCYLDGTFGRGGHSRLILSKLGPDGRLIGFDKDPQAIATG- 66

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +T+     +F + Q +F++L   V ++G    V G++ DLGVSS Q+D  +RGFSF   G
Sbjct: 67  QTLAAEDGRFVVVQRSFAELGSVVAERGLTGKVSGILLDLGVSSPQLDDAERGFSFLNDG 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  S GISA++ VN A V+++ R+    GEE+ + R+A A+V+RR   PF+ T D
Sbjct: 127 PLDMRMDPSRGISAAEFVNTAPVEEIARVFKEYGEERFSGRMARAVVERRDVTPFERTAD 186

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ +++      +  + +PATR+FQ LRI VNNE+ +L  GL +A + L+ GG L+V+SF
Sbjct: 187 LAEVLKVANPAWEKGK-NPATRAFQGLRIQVNNELGDLEAGLEAALECLEVGGRLVVISF 245

Query: 251 HSLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+VK F      G+   +   +P        +  +  K    +  ++  N RSRS
Sbjct: 246 HSLEDRIVKLFMRKLVKGEADNLPRNLPVRHVAFEPKIKVHGKAQTASDAELKANPRSRS 305

Query: 309 AKLRAGMR 316
           A +R   +
Sbjct: 306 AVMRVAEK 313


>gi|91791714|ref|YP_561365.1| S-adenosyl-methyltransferase MraW [Shewanella denitrificans OS217]
 gi|123061331|sp|Q12SD4|RSMH_SHEDO RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|91713716|gb|ABE53642.1| methyltransferase [Shewanella denitrificans OS217]
          Length = 313

 Score =  365 bits (938), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 116/307 (37%), Positives = 173/307 (56%), Gaps = 13/307 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H+ VLL++ +  LN  P  + +D TFG GG+SR           +IA+DRDP A+   ++
Sbjct: 7   HLSVLLKETVDGLNIQPDGIYIDGTFGRGGHSRHVLSHLGPNGRLIAIDRDPQAIEAAKQ 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              D   +F +    F QL DYV + G    +DGV+ DLGVSS Q+D  +RGFSF + GP
Sbjct: 67  FADD--PRFQIVHGGFGQLADYVAELGLVGKIDGVLLDLGVSSPQLDDAERGFSFLRDGP 124

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G +A+  + +A ++D+  +    GEEK +  IA  I   R+  PF  T+DL
Sbjct: 125 LDMRMDNSQGQTAAQWIARAEIEDMAWVFKTYGEEKNSRHIARCIAADREKTPFLRTKDL 184

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI +     + N+ HPATR FQA+RI++N+E+E++ Q L  A   L   G + ++SFH
Sbjct: 185 ADLIARITKNKERNK-HPATRVFQAIRIYINSELEQIDQALEGAVNVLAPHGRMSIISFH 243

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI--TKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK+F    S        +  + A     + +    K + P++ +V  N R+RS+
Sbjct: 244 SLEDRMVKRFMRRHSQGESVPHGLPITEAEINKSKKLKTLGKAMKPSEIEVEQNPRARSS 303

Query: 310 KLRAGMR 316
            LR   R
Sbjct: 304 VLRVAER 310


>gi|292490616|ref|YP_003526055.1| S-adenosyl-methyltransferase MraW [Nitrosococcus halophilus Nc4]
 gi|291579211|gb|ADE13668.1| S-adenosyl-methyltransferase MraW [Nitrosococcus halophilus Nc4]
          Length = 317

 Score =  365 bits (938), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 121/316 (38%), Positives = 179/316 (56%), Gaps = 10/316 (3%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M+         H PVLL +VI  L      + +DATFG GG++++          ++ +D
Sbjct: 1   MAPMDEKETLTHQPVLLREVIQALAIRRDGLYVDATFGRGGHAQAILDALSSEGRLLGVD 60

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCG 121
           +DP A+      +     +FS+ QA+  +L   V ++G    V+GV+FDLGVSS Q++  
Sbjct: 61  KDPEAI-AAGRILAQQDRRFSIVQASIGELARVVAEQGWLKRVNGVLFDLGVSSPQLENA 119

Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
            RGFSF + GPLDMRM+ + G SA++ +  A  K++  +L   GEE+   RIA AIV+ R
Sbjct: 120 KRGFSFLQDGPLDMRMNPAVGQSAAEWLASATEKEIAAVLKTYGEERFCRRIARAIVQAR 179

Query: 181 QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           +  P   T+ L+ ++ K     +  R HPATRSFQA+RIF+NNE+EEL   L  A   L 
Sbjct: 180 EINPLTRTKQLAEVVAKANPSWEPGR-HPATRSFQAIRIFINNELEELRAALEQAVTVLA 238

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300
             G L+V+SFHSLEDR+VK+FF  +S        +     H      +  K++ PT E+V
Sbjct: 239 VKGRLVVISFHSLEDRMVKRFFRQKSRGEDLPPDLPVMQDHFQASLQVLGKLIWPTPEEV 298

Query: 301 AFNRRSRSAKLRAGMR 316
           + N R+RSA+LR   +
Sbjct: 299 SRNPRARSARLRVAEK 314


>gi|188532894|ref|YP_001906691.1| S-adenosyl-methyltransferase MraW [Erwinia tasmaniensis Et1/99]
 gi|263447020|sp|B2VD83|RSMH_ERWT9 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|188027936|emb|CAO95793.1| S-adenosyl-methyltransferase MraW [Erwinia tasmaniensis Et1/99]
          Length = 313

 Score =  365 bits (938), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 122/317 (38%), Positives = 181/317 (57%), Gaps = 19/317 (5%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAV 71
           H    H  VLL++ +  LN     + +D TFG GG+SR           + A+DRDP A+
Sbjct: 2   HDTFKHTTVLLDEAVNGLNIKSDGIYIDGTFGRGGHSRLILSQLGEHGRLYAIDRDPQAI 61

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSF 127
           +   E       +F++    FS L +Y  ++G    +DG++ DLGVSS Q+D  +RGFSF
Sbjct: 62  AAAAEI---TDPRFTIIHGPFSALAEYAEERGLKGKIDGILLDLGVSSPQLDDAERGFSF 118

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
            + GPLDMRM  + G SA++ + +A   D+  +L   GEE+ A RIA AIV+R +  P  
Sbjct: 119 MRDGPLDMRMDPTRGQSAAEWLLKAEESDIAFVLKTFGEERFAKRIARAIVERNREQPMT 178

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
            T++L+ +I       K+   HPATRSFQA+RI+VN+E+EE+ Q L+ A  AL AGG L 
Sbjct: 179 RTKELADVIYAATPV-KDKFKHPATRSFQAIRIWVNSELEEIEQALKGALSALTAGGRLS 237

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVA 301
           ++SFHSLEDR+VK+F   +S        +  + A          +++ K  ++P + +VA
Sbjct: 238 IISFHSLEDRIVKRFMREQSRGPQIPHGLPMTEAQLSSLGGRQLKALGK--MMPGESEVA 295

Query: 302 FNRRSRSAKLRAGMRTV 318
            N R+RS+ LR   RT 
Sbjct: 296 DNPRARSSVLRIAERTA 312


>gi|227893331|ref|ZP_04011136.1| S-adenosyl-methyltransferase [Lactobacillus ultunensis DSM 16047]
 gi|227864746|gb|EEJ72167.1| S-adenosyl-methyltransferase [Lactobacillus ultunensis DSM 16047]
          Length = 330

 Score =  365 bits (938), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 107/311 (34%), Positives = 165/311 (53%), Gaps = 13/311 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76
            H  VLL + I  L P  G + +DATFG GG++R          ++  D+D +A+   + 
Sbjct: 19  KHTSVLLHETIDNLKPKDGGLYVDATFGGGGHARYLLSKIDSGTLVGFDQDEYAIKSAKL 78

Query: 77  TMRDY-----KEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSF 127
              D      + +  L    FS LQ+ + +     G+DG+ +DLGVSS Q D  DRGFS+
Sbjct: 79  NFADLLEPDSEPKLKLVHDNFSNLQNDLVELGYTDGIDGIYYDLGVSSPQFDQADRGFSY 138

Query: 128 QKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           + +  LDMRM  S  + A  +VN  + K+L  IL   G+EK + +IAH I++RR+  P  
Sbjct: 139 RYNARLDMRMDQSQDLDAYQLVNDLSQKELADILYQYGDEKFSRQIAHRIIERRKDKPIV 198

Query: 187 TTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           TT +L  +I+  +   ++    HPA +SFQALR+ VN E++ L   L  A K L+ GG +
Sbjct: 199 TTFELVDIIKDAIPAYARRTGGHPAKKSFQALRVAVNRELDVLQASLEEAIKILRPGGRI 258

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
            V++F S ED++VKK F   S   +        +    +   + +K +  +  ++  N R
Sbjct: 259 SVITFQSHEDKIVKKIFKKYSEVEIPRGMPFVPDDLKPMLCLVNRKPITASTSELENNNR 318

Query: 306 SRSAKLRAGMR 316
           SRSAKLR   +
Sbjct: 319 SRSAKLRIAKK 329


>gi|332187132|ref|ZP_08388872.1| S-adenosyl-methyltransferase MraW [Sphingomonas sp. S17]
 gi|332012832|gb|EGI54897.1| S-adenosyl-methyltransferase MraW [Sphingomonas sp. S17]
          Length = 326

 Score =  365 bits (938), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 136/316 (43%), Positives = 199/316 (62%), Gaps = 10/316 (3%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDP 68
           MS A++     H+PVLL++V+  L   PG+  +D TFGAGGY+R+    G+ VIA DRDP
Sbjct: 1   MSPAVND--APHIPVLLDEVLDALAILPGETHVDGTFGAGGYTRAMLGRGAKVIAFDRDP 58

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
            A++ GQ  ++      +L    FS L   +  + VDGVV D+GVSSMQ+D  +RGFSFQ
Sbjct: 59  DAIANGQALIQAEPG-LALVHREFSGLDQALEAQ-VDGVVLDIGVSSMQLDQAERGFSFQ 116

Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             GPLDMRM+ +G SA+D +N A+   +  +L   GEE ++ R+A AIV  R   P   T
Sbjct: 117 GDGPLDMRMAQAGESAADFLNTADEAAIADVLYHYGEEPRSRRVAQAIVAAR---PLMRT 173

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L++++++ + +  +++  PATR+FQA+RI VN E+EELA+GL +AE+ALK GG L +V
Sbjct: 174 GELAAVVRRALGYRPHDKKDPATRTFQAIRIHVNRELEELAEGLAAAERALKPGGRLAIV 233

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITKKVVVPTQEDVAFNRRS 306
           +FHSLEDR+VK+FF  R+G++      +P    A    F ++  K V     ++A N R+
Sbjct: 234 TFHSLEDRMVKRFFRERAGQLPGGSRHLPQQVAAQAPSFTAV-GKAVRAGAAELARNPRA 292

Query: 307 RSAKLRAGMRTVERSI 322
           RSA LR   RT   + 
Sbjct: 293 RSATLRFATRTESPAW 308


>gi|49084936|gb|AAT51240.1| PA4420 [synthetic construct]
          Length = 314

 Score =  365 bits (938), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 121/313 (38%), Positives = 181/313 (57%), Gaps = 14/313 (4%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAV 71
           +    H+ VLLE+ ++ L P      LD TFG GG+SR+  +    G  ++  D+DP A+
Sbjct: 2   NATYRHITVLLEEAVSALAPREDGCYLDGTFGRGGHSRALLEKLGAGGRLLGFDKDPQAI 61

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSF 127
             G + +     +F + Q +F++L D V  +G    VDGV+ DLGVSS Q+D  +RGFSF
Sbjct: 62  QTG-KALAAEDGRFVIVQRSFAELGDEVRARGLEGRVDGVLLDLGVSSPQLDDPERGFSF 120

Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
              GPLDMRM+   GISA++ +  A  +++ R+    GEE+ A R+A AIV+RRQ  PF+
Sbjct: 121 LNDGPLDMRMNPGQGISAAEFIANATEEEIARVFKEYGEERFAKRMARAIVQRRQERPFE 180

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
            T DL+ +I       +  + +PATR+FQ LRI VNNE+ +L +GL +A ++L  GG L+
Sbjct: 181 RTADLAEVITVANPAWEKGK-NPATRAFQGLRIHVNNELGDLERGLDAALESLAVGGRLV 239

Query: 247 VVSFHSLEDRLVKKFFASRSG---KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
           V+SFHSLEDR+VK F    +      +     I S       + +  K    ++E++  N
Sbjct: 240 VISFHSLEDRIVKLFMRKHAKGEADNLPRDLPIRSKVFEPRLKLL-GKPQYASEEELKAN 298

Query: 304 RRSRSAKLRAGMR 316
            RSRSA +R   +
Sbjct: 299 PRSRSAVMRVAEK 311


>gi|239947593|ref|ZP_04699346.1| S-adenosyl-methyltransferase MraW [Rickettsia endosymbiont of
           Ixodes scapularis]
 gi|241068474|ref|XP_002408444.1| S-adenosyl-methyltransferase mraw, putative [Ixodes scapularis]
 gi|215492432|gb|EEC02073.1| S-adenosyl-methyltransferase mraw, putative [Ixodes scapularis]
 gi|239921869|gb|EER21893.1| S-adenosyl-methyltransferase MraW [Rickettsia endosymbiont of
           Ixodes scapularis]
          Length = 307

 Score =  365 bits (938), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 127/307 (41%), Positives = 185/307 (60%), Gaps = 5/307 (1%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI-ALDRDPFAVSCGQ 75
           I  HV V+L +++  L+P  G+  LD TFGAGGYS++  +     I ALDRDP  +   +
Sbjct: 2   IQSHVSVMLNEMLEALSPKDGESYLDCTFGAGGYSKAILESYDCYITALDRDPNVIKRAE 61

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           E  ++Y E+F   +  F+     +  K  DG+V DLGVSSMQ+D  DRGFSF   GPLDM
Sbjct: 62  EIKQNYGERFDFIETNFADSFTKLKKKKFDGIVLDLGVSSMQLDIADRGFSFLHDGPLDM 121

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RMS  G++A + VN A  K+L  ++   G+E  + RIA  IV+ R++A   +T  L+ ++
Sbjct: 122 RMSGQGLNAEEFVNTAEEKELADVIYKYGDESFSRRIARRIVEYRKTARIDSTDKLAEIV 181

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           + ++ F K  +I PAT++FQA+RI++N+E+ EL + L + +  LK  G L+VVSFHSLED
Sbjct: 182 RNSIGFRK-GKIDPATKTFQAIRIYINDELGELERFLANVKNILKKDGRLVVVSFHSLED 240

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNA---HPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           R+VK FF   S K +A       +         + IT K + P+ ++V  N R+RSAKLR
Sbjct: 241 RIVKNFFKENSEKPVARSKYAKDDMAIDPDKWLKIITNKALAPSDKEVGLNIRARSAKLR 300

Query: 313 AGMRTVE 319
           A     E
Sbjct: 301 AAKAIYE 307


>gi|109914373|sp|Q5XAL3|RSMH_STRP6 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 316

 Score =  365 bits (938), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 104/320 (32%), Positives = 170/320 (53%), Gaps = 15/320 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           M+   H     HV VLL + + +L+  P  + +DAT G  G+S           ++   D
Sbjct: 1   MTKEFH-----HVTVLLHETVDMLDIKPDGIYVDATLGGSGHSAYLLSKLGEEGHLYCFD 55

Query: 66  RDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDC 120
           +D  A+   Q T++ Y  K Q +  +  F  L+  +   GVD   G+++DLGVSS Q+D 
Sbjct: 56  QDQKAIDNAQVTLKSYIDKGQVTFIKDNFRHLKARLTALGVDEIDGILYDLGVSSPQLDE 115

Query: 121 GDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS+++  PLDMRM    + +A +VVN     DL +I    GE+K + +IA  I + 
Sbjct: 116 RERGFSYKQDAPLDMRMDRQSLLTAYEVVNTYPFNDLVKIFFKYGEDKFSKQIARKIEQA 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R   P +TT +L+ LI+      +   + HPA + FQA+RI VN+E+    + ++ A + 
Sbjct: 176 RAIKPIETTTELAELIKAAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQEAMEL 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L   G + V++FHSLEDRL K+ F   S   +     +        F+ +++K ++P+  
Sbjct: 236 LALDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPLIPEDMKPKFELVSRKPILPSHS 295

Query: 299 DVAFNRRSRSAKLRAGMRTV 318
           ++A N+R+ SAKLR   +  
Sbjct: 296 ELAANKRAHSAKLRVAKKIR 315


>gi|226355756|ref|YP_002785496.1| S-adenosyl-methyltransferase MraW [Deinococcus deserti VCD115]
 gi|263447379|sp|C1D1L8|RSMH_DEIDV RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|226317746|gb|ACO45742.1| putative Methyltransferase [Deinococcus deserti VCD115]
          Length = 300

 Score =  365 bits (938), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 128/316 (40%), Positives = 179/316 (56%), Gaps = 27/316 (8%)

Query: 9   MSSAIHHTIGD---HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALD 65
           M+     T  +   H  VL  +V+  L P PGK I+D T G  G++R   + G++V  +D
Sbjct: 1   MTLPEDTTTAESLIHTSVLSAEVLEALAPTPGKTIVDGTLGGAGHTRLLLEAGAHVYGID 60

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGD 122
           +DPFA+   +E         ++ Q  +  +   +   GV   DG++ D+GVSS Q+D   
Sbjct: 61  QDPFALDRARE---AGLPNLTVLQGNYRDMVSLLEQAGVSQVDGILLDIGVSSFQLDDAG 117

Query: 123 RGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           RGFS+    PLDMRMS SG SA+DVVN    +DL  I+   GE++ + RIA AI + RQ 
Sbjct: 118 RGFSYHTEAPLDMRMSQSGESAADVVNTYEEEDLAAIIYEYGEDRLSRRIARAIGQARQK 177

Query: 183 APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           AP +TT  L+ ++++      +  IHPA R+FQALRI VN+E+  L  GL++AE  L+ G
Sbjct: 178 APIETTVQLAEIVKRAYP-GFSKGIHPARRTFQALRIHVNDELGALRDGLQAAETLLRPG 236

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G L V+SFHSLEDR+VK+F                      V Q +TK+ VV + E+ A 
Sbjct: 237 GRLAVISFHSLEDRIVKRFLLGSE-----------------VLQPLTKRPVVASDEEQAI 279

Query: 303 NRRSRSAKLRAGMRTV 318
           N RSRSAKLRA  R V
Sbjct: 280 NPRSRSAKLRAAERVV 295


>gi|256841653|ref|ZP_05547159.1| MraW methylase [Parabacteroides sp. D13]
 gi|301310871|ref|ZP_07216800.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 20_3]
 gi|256736547|gb|EEU49875.1| MraW methylase [Parabacteroides sp. D13]
 gi|300830934|gb|EFK61575.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 20_3]
          Length = 305

 Score =  365 bits (937), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 109/306 (35%), Positives = 166/306 (54%), Gaps = 17/306 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HVPV+L + +  L+  P  + +D TFG GG+SR   K    G  +   D+D  A      
Sbjct: 9   HVPVMLRESLEGLDIRPDGIYVDVTFGGGGHSREILKRLGSGGELYGFDQDADAEHNI-- 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  +F+  ++ F  L +++   G    VDG++ DLGVSS   D  DRGFSF+  G 
Sbjct: 67  ---PADPRFTFVRSNFRYLYNFMRYYGESGEVDGLLADLGVSSHHFDDKDRGFSFRFDGT 123

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+  +G +A+D+VN    + L  +  + GE K + ++A  +VK R++   +T  D 
Sbjct: 124 LDMRMNTRAGQTAADIVNNYTAEALADVFYLYGELKVSRKLASVLVKARETKKIETIGDF 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             +I+      K+       + FQALRI VN+E+  L + LRS  + L+ GG L+V+++H
Sbjct: 184 LEVIKPFT--GKDKEKKFLAQVFQALRIEVNDEMRALKEMLRSTLRVLRPGGRLVVITYH 241

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDRLVK F  + + +    +    +   P  F+ +  KV+VPT E+V  N RSRSAKL
Sbjct: 242 SLEDRLVKNFLKTGNFEGKCEQDFFGNVRSP--FRLVNNKVIVPTDEEVERNPRSRSAKL 299

Query: 312 RAGMRT 317
           R   + 
Sbjct: 300 RIAEKV 305


>gi|197265544|ref|ZP_03165618.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197243799|gb|EDY26419.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
          Length = 313

 Score =  365 bits (937), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 121/312 (38%), Positives = 182/312 (58%), Gaps = 19/312 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++  Q
Sbjct: 6   KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAQ 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +FS+    FS L DYV ++     +DG++ DLGVSS Q+D  +RGFSF + G
Sbjct: 66  TI---NDPRFSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFMRDG 122

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + G SA++ +  A   D+  +L   GEE+ A RIAHAIV+R +  P   T++
Sbjct: 123 PLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIAHAIVERNREQPMTRTKE 182

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L ++SF
Sbjct: 183 LAEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSIISF 241

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305
           HSLEDR+VK+F   +S        +  + A          +++ K  ++P +++VA N R
Sbjct: 242 HSLEDRIVKRFMREQSRGPQVPAGLPMTEAQLKKLGGRELRALGK--LMPGEKEVAENPR 299

Query: 306 SRSAKLRAGMRT 317
           +RS+ LR   RT
Sbjct: 300 ARSSVLRIAERT 311


>gi|26246015|ref|NP_752054.1| S-adenosyl-methyltransferase MraW [Escherichia coli CFT073]
 gi|300981119|ref|ZP_07175365.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 45-1]
 gi|30173069|sp|Q8FL68|RSMH_ECOL6 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|26106412|gb|AAN78598.1|AE016755_98 S-adenosyl-methyltransferase mraW [Escherichia coli CFT073]
 gi|300409021|gb|EFJ92559.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 45-1]
 gi|315294723|gb|EFU54066.1| S-adenosyl-methyltransferase MraW [Escherichia coli MS 153-1]
          Length = 313

 Score =  365 bits (937), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 118/312 (37%), Positives = 178/312 (57%), Gaps = 19/312 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++  +
Sbjct: 6   KHFTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +FS+    FS L +YV D+     +DG++ DLGVSS Q+D  +RGFSF + G
Sbjct: 66  TI---DDPRFSIIHGPFSALGEYVADRDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDG 122

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + G SA++ +  A   D+  +L   GEE+ A RIA AIV+  +  P   T++
Sbjct: 123 PLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVEHNREQPMTRTKE 182

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L ++SF
Sbjct: 183 LAEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLHVLAPGGRLSIISF 241

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305
           HSLEDR+VK+F    S        +  +            +++ K  ++P +E+VA N R
Sbjct: 242 HSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGK--LMPGEEEVAENPR 299

Query: 306 SRSAKLRAGMRT 317
           +RS+ LR   RT
Sbjct: 300 ARSSVLRIAERT 311


>gi|161612464|ref|YP_001586429.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|204927221|ref|ZP_03218423.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|262826399|sp|A9MZL1|RSMH_SALPB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|161361828|gb|ABX65596.1| hypothetical protein SPAB_00154 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|204323886|gb|EDZ09081.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|322615941|gb|EFY12858.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322620725|gb|EFY17585.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322623923|gb|EFY20760.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322627371|gb|EFY24162.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322630678|gb|EFY27442.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322638102|gb|EFY34803.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322640588|gb|EFY37239.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322647729|gb|EFY44214.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322648078|gb|EFY44545.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322656890|gb|EFY53176.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322657400|gb|EFY53672.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322663719|gb|EFY59919.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322666552|gb|EFY62730.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322672289|gb|EFY68401.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322676399|gb|EFY72470.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322679508|gb|EFY75553.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322686163|gb|EFY82147.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323195007|gb|EFZ80193.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323200084|gb|EFZ85171.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323201095|gb|EFZ86164.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323209492|gb|EFZ94425.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323212256|gb|EFZ97080.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323216561|gb|EGA01287.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323225810|gb|EGA10030.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323228648|gb|EGA12777.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323236738|gb|EGA20814.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323239761|gb|EGA23808.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323242191|gb|EGA26220.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323249385|gb|EGA33301.1| 16S rRNA m(4)C1402 methyltranserfase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323252282|gb|EGA36133.1| 16S rRNA m(4)C1402 methyltranserfase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323256628|gb|EGA40358.1| 16S rRNA m(4)C1402 methyltranserfase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323262997|gb|EGA46547.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323265482|gb|EGA48978.1| 16S rRNA m(4)C1402 methyltranserfase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323271730|gb|EGA55148.1| 16S rRNA m(4)C1402 methyltranserfase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 313

 Score =  365 bits (937), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 120/312 (38%), Positives = 181/312 (58%), Gaps = 19/312 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++  Q
Sbjct: 6   KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAQ 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +FS+    FS L DYV ++     +DG++ DLGVSS Q+D  +RGFSF + G
Sbjct: 66  TI---NDPRFSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFMRDG 122

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   T++
Sbjct: 123 PLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIARAIVERNREQPMTRTKE 182

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L ++SF
Sbjct: 183 LAEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSIISF 241

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305
           HSLEDR+VK+F   +S        +  + A          +++ K  ++P +++VA N R
Sbjct: 242 HSLEDRIVKRFMREQSRGPQIPAGLPMTEAQLKKLGGRELRALGK--LMPGEKEVAENPR 299

Query: 306 SRSAKLRAGMRT 317
           +RS+ LR   RT
Sbjct: 300 ARSSVLRIAERT 311


>gi|300774256|ref|ZP_07084123.1| S-adenosyl-methyltransferase MraW [Sphingobacterium spiritivorum
           ATCC 33861]
 gi|300758935|gb|EFK55764.1| S-adenosyl-methyltransferase MraW [Sphingobacterium spiritivorum
           ATCC 33861]
          Length = 303

 Score =  365 bits (937), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 121/304 (39%), Positives = 165/304 (54%), Gaps = 16/304 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           HVPV+L++ I  L+  P  V +D TFG GG+SR   K       + A D+DP A+     
Sbjct: 6   HVPVMLKECIDALSIKPDGVYVDVTFGGGGHSREILKHLGPKGRLFAFDQDPDALENTIA 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                 E+F+L    F  L++ +   GV   DG++ DLGVSS Q D  DRGFS +    L
Sbjct: 66  -----DERFTLIHQNFRFLKNNLRLNGVKEVDGILADLGVSSHQFDAADRGFSIRFDADL 120

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM   S + A  V+N    +DL RI G+ GE   A  +A  +V  R SAP +T   L 
Sbjct: 121 DMRMDQVSDLDAKKVLNTYAEEDLHRIFGMYGEIMNAKSLAKTVVTARLSAPIETVAGLK 180

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I+K V   K ++ H   + FQALRI VN E+E L + L      LK  G L+V+S+HS
Sbjct: 181 EVIRKLVPKGKEHKYH--AQVFQALRIEVNKELEALQEFLLQTVSTLKPSGKLVVMSYHS 238

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDRLVK F A    K    +    +   P  FQ IT+K +  ++E+++ N RSRSAKLR
Sbjct: 239 LEDRLVKNFMAKGKFKGEVEKDFFGNEIKP--FQVITRKAITASEEELSTNNRSRSAKLR 296

Query: 313 AGMR 316
              +
Sbjct: 297 VAEK 300


>gi|294674965|ref|YP_003575581.1| S-adenosyl-methyltransferase MraW [Prevotella ruminicola 23]
 gi|294473982|gb|ADE83371.1| S-adenosyl-methyltransferase MraW [Prevotella ruminicola 23]
          Length = 304

 Score =  365 bits (937), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 109/305 (35%), Positives = 164/305 (53%), Gaps = 16/305 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           HVPVLL + I  L    G + +D TFG GG+S+   +     +++ + D+DP A      
Sbjct: 9   HVPVLLHESIDGLAIKSGGIYVDVTFGGGGHSKEILRRLDEKAHLYSFDQDPDAEKNIVN 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                 ++F+  ++ F  L++++   GVD   G++ DLGVSS   D   RGFSF+   PL
Sbjct: 69  -----DDRFTFVRSNFRYLKNWMRYYGVDHIDGLLADLGVSSHHFDDETRGFSFRFDAPL 123

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  +G +A++++N  + + L  I  I GE K A +IA  I K R     +TT DL 
Sbjct: 124 DMRMNKRAGTTAAEILNTYDEEQLADIFYIYGELKNARKIASIIAKTRNEKKIETTGDLM 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           S  +K   F +        + FQALRI VN+E++ L + L  A+  L  GG L V+++HS
Sbjct: 184 SATEKL--FQREREKKEMAKMFQALRIEVNHEMDALKEMLNGAKDLLGEGGRLSVITYHS 241

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK    + + +    +        P  F+ I  KV+VP+ E+   N RSRSAKLR
Sbjct: 242 LEDRIVKNMMKAGNVEGKIKQDFFGRIEAP--FRLINNKVIVPSDEEQQQNPRSRSAKLR 299

Query: 313 AGMRT 317
              + 
Sbjct: 300 IAEKI 304


>gi|116052453|ref|YP_792766.1| S-adenosyl-methyltransferase MraW [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|122257540|sp|Q02H20|RSMH_PSEAB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|115587674|gb|ABJ13689.1| putative methyltransferase [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 313

 Score =  365 bits (937), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 121/313 (38%), Positives = 182/313 (58%), Gaps = 14/313 (4%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAV 71
           +    H+ VLLE+ ++ L P      LD TFG GG+SR+  +    G  ++  D+DP A+
Sbjct: 2   NATYRHITVLLEEAVSALAPREDGCYLDGTFGRGGHSRALLEKLGTGGRLLGFDKDPQAI 61

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSF 127
             G + +     +F + Q +F++L D V  +G    VDGV+ DLGVSS Q+D  +RGFSF
Sbjct: 62  QTG-KALAAEDGRFVIVQRSFAELGDEVRARGLEGRVDGVLLDLGVSSPQLDDPERGFSF 120

Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
              GPLDMRM+   GISA++ +  A  +++ R+  + GEE+ A R+A AIV+RRQ  PF+
Sbjct: 121 LNDGPLDMRMNPGQGISAAEFIANATEEEIARVFKVYGEERFAKRMARAIVQRRQERPFE 180

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
            T DL+ +I       +  + +PATR+FQ LRI VNNE+ +L +GL +A ++L  GG L+
Sbjct: 181 RTADLAEVITVANPAWEKGK-NPATRAFQGLRIHVNNELGDLERGLDAALESLAVGGRLV 239

Query: 247 VVSFHSLEDRLVKKFFASRSG---KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
           V+SFHSLEDR+VK F    +      +     I S       + +  K    ++E++  N
Sbjct: 240 VISFHSLEDRIVKLFMRKHAKGEADNLPRDLPIRSKVFEPRLKLL-GKPQYASEEELKAN 298

Query: 304 RRSRSAKLRAGMR 316
            RSRSA +R   +
Sbjct: 299 PRSRSAVMRVAEK 311


>gi|157803594|ref|YP_001492143.1| S-adenosyl-methyltransferase MraW [Rickettsia canadensis str.
           McKiel]
 gi|167011837|sp|A8EYC5|RSMH_RICCK RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|157784857|gb|ABV73358.1| S-adenosyl-methyltransferase MraW [Rickettsia canadensis str.
           McKiel]
          Length = 308

 Score =  365 bits (937), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 124/304 (40%), Positives = 180/304 (59%), Gaps = 5/304 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETM 78
           H+PV+L +++A L P  GK  LD TFGAGGYS++  +     V ALDRDP  +   +   
Sbjct: 5   HIPVMLNEMLANLAPQDGKSYLDCTFGAGGYSKAILESCNCYVTALDRDPNVIKRAERIK 64

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138
           ++Y  +F   +  F+     + +K  DG+V DLGVSSMQ+D  DRGFSF    PLDMRMS
Sbjct: 65  QNYSTRFDFIETNFADSFAKLKEKKFDGIVLDLGVSSMQLDIADRGFSFLHDSPLDMRMS 124

Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198
             G+SA + +N    K+L  I+   G+E  + RIA  IV+ R++A   +T  L+ +++ +
Sbjct: 125 GQGLSAEEFINTVEEKELADIIYKYGDESFSRRIAKRIVEYRKTARINSTGKLAEIVRNS 184

Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258
           + F K  +I PAT++FQA+RI++N+E+ EL + L + +  L   G L++VSFHSLEDR+V
Sbjct: 185 IGFRK-GKIDPATKTFQAIRIYINDELRELERFLANVQNILNKDGRLVIVSFHSLEDRIV 243

Query: 259 KKFFASRSGKVMA---VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           K FF   S K +A        P        + IT K   P+ ++V  N R+RSAKLRA  
Sbjct: 244 KHFFKENSEKPVARSKYSKDNPVIDPNKWLKIITNKAEAPSDKEVELNVRARSAKLRAAK 303

Query: 316 RTVE 319
              E
Sbjct: 304 AIYE 307


>gi|299143950|ref|ZP_07037030.1| S-adenosyl-methyltransferase MraW [Peptoniphilus sp. oral taxon 386
           str. F0131]
 gi|298518435|gb|EFI42174.1| S-adenosyl-methyltransferase MraW [Peptoniphilus sp. oral taxon 386
           str. F0131]
          Length = 312

 Score =  365 bits (937), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 108/308 (35%), Positives = 163/308 (52%), Gaps = 10/308 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
           +H  VL E  I LLN     + +D T G  G+S    K+      +I +D+D  A+   +
Sbjct: 4   NHKSVLFEDTINLLNIKENGIYVDGTIGGAGHSSQILKILNGTGLLIGIDQDLAALEKSK 63

Query: 76  ETMRDYK-EQFSLFQAT---FSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           E + +     + LF +    F+ + D +    VDG + DLGVSS Q D GDRGFS+    
Sbjct: 64  EVLGELGYNNYKLFNSNYKDFNVILDSLEIDKVDGFLLDLGVSSYQFDEGDRGFSYNYDA 123

Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM  +   SA D+VN  + +++ +IL    EEK A RIA  IVK R   P  TT +
Sbjct: 124 KLDMRMDTNAAFSAWDIVNGYSKEEIAKILWDYSEEKWAGRIADFIVKSRIKKPIDTTFE 183

Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I+  +  + +  + HPA ++FQALRI  NNE++ L   L      L  GG + V+S
Sbjct: 184 LVEIIKNAIPAAARKKKGHPAKKTFQALRIETNNELDVLRNTLGRMIDRLNPGGRIAVIS 243

Query: 250 FHSLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK+ F       +   +  + +       + IT+K +V +++++  N R+ S
Sbjct: 244 FHSLEDRIVKETFKYYYLDCICPEKAPVCNCGKKREIEIITRKPIVASEKELIENNRAHS 303

Query: 309 AKLRAGMR 316
           AKLR   +
Sbjct: 304 AKLRVAEK 311


>gi|15599616|ref|NP_253110.1| S-adenosyl-methyltransferase MraW [Pseudomonas aeruginosa PAO1]
 gi|107099995|ref|ZP_01363913.1| hypothetical protein PaerPA_01001016 [Pseudomonas aeruginosa PACS2]
 gi|254244769|ref|ZP_04938091.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|296391129|ref|ZP_06880604.1| S-adenosyl-methyltransferase MraW [Pseudomonas aeruginosa PAb1]
 gi|20139184|sp|Q9HVZ5|RSMH_PSEAE RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|9950652|gb|AAG07808.1|AE004856_19 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
 gi|126198147|gb|EAZ62210.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
          Length = 313

 Score =  365 bits (937), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 121/313 (38%), Positives = 181/313 (57%), Gaps = 14/313 (4%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAV 71
           +    H+ VLLE+ ++ L P      LD TFG GG+SR+  +    G  ++  D+DP A+
Sbjct: 2   NATYRHITVLLEEAVSALAPREDGCYLDGTFGRGGHSRALLEKLGAGGRLLGFDKDPQAI 61

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSF 127
             G + +     +F + Q +F++L D V  +G    VDGV+ DLGVSS Q+D  +RGFSF
Sbjct: 62  QTG-KALAAEDGRFVIVQRSFAELGDEVRARGLEGRVDGVLLDLGVSSPQLDDPERGFSF 120

Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
              GPLDMRM+   GISA++ +  A  +++ R+    GEE+ A R+A AIV+RRQ  PF+
Sbjct: 121 LNDGPLDMRMNPGQGISAAEFIANATEEEIARVFKEYGEERFAKRMARAIVQRRQERPFE 180

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
            T DL+ +I       +  + +PATR+FQ LRI VNNE+ +L +GL +A ++L  GG L+
Sbjct: 181 RTADLAEVITVANPAWEKGK-NPATRAFQGLRIHVNNELGDLERGLDAALESLAVGGRLV 239

Query: 247 VVSFHSLEDRLVKKFFASRSG---KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
           V+SFHSLEDR+VK F    +      +     I S       + +  K    ++E++  N
Sbjct: 240 VISFHSLEDRIVKLFMRKHAKGEADNLPRDLPIRSKVFEPRLKLL-GKPQYASEEELKAN 298

Query: 304 RRSRSAKLRAGMR 316
            RSRSA +R   +
Sbjct: 299 PRSRSAVMRVAEK 311


>gi|313200234|ref|YP_004038892.1| s-adenosyl-methyltransferase mraw [Methylovorus sp. MP688]
 gi|312439550|gb|ADQ83656.1| S-adenosyl-methyltransferase MraW [Methylovorus sp. MP688]
          Length = 321

 Score =  365 bits (937), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 120/310 (38%), Positives = 172/310 (55%), Gaps = 13/310 (4%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSC 73
           +  HV VLLE+ +A L   P  + +D TFG GG+SR   +       ++ LDRD  AVS 
Sbjct: 13  VSPHVSVLLEEAVAALAIKPNGIYVDGTFGRGGHSRKILEQLGADGRLLGLDRDLAAVSA 72

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            Q        +FS+    FS+L + +  +    VDGV+ DLG+SS QID G+RGFSF+  
Sbjct: 73  AQSI---QDPRFSIHHHHFSELGEVLRAQDIQQVDGVLLDLGISSPQIDEGERGFSFRFD 129

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA-PFQTT 188
           GPLDMRM  S G +A++ + +A+ + LT ++   GEE+ A ++A AIV  R       TT
Sbjct: 130 GPLDMRMDQSRGQTAAEFLAEASEQQLTGVIKEYGEERFAKQVARAIVAARTGGNALTTT 189

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ ++   +   +  +  PATR+FQALRIF+N E+EEL+  L     AL  GG L V+
Sbjct: 190 GQLAKVVAGAIPKVEPGQ-DPATRTFQALRIFLNQELEELSLVLPQCLDALAPGGRLAVI 248

Query: 249 SFHSLEDRLVKKFFA-SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           SFHSLEDR+VK+F    +    +     + +   P        K + P+  ++  N RSR
Sbjct: 249 SFHSLEDRIVKRFVRSEQDRDDLPANFPVLAKDLPQPRMMAVGKPIKPSAAEIKRNPRSR 308

Query: 308 SAKLRAGMRT 317
           SA LR   RT
Sbjct: 309 SAVLRVAERT 318


>gi|224024612|ref|ZP_03642978.1| hypothetical protein BACCOPRO_01339 [Bacteroides coprophilus DSM
           18228]
 gi|224017834|gb|EEF75846.1| hypothetical protein BACCOPRO_01339 [Bacteroides coprophilus DSM
           18228]
          Length = 304

 Score =  365 bits (937), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 110/304 (36%), Positives = 171/304 (56%), Gaps = 16/304 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H+PVLLE+ I  +N  PG + +D TFG GG+S+   +     S + + D+D  A     E
Sbjct: 9   HIPVLLEESIDGMNIQPGGIYVDMTFGGGGHSKEILRRMDKDSRLFSFDQDEDA-----E 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                 E+F+  ++ F  L +++   GV   D ++ DLGVSS   D  +RGFSF+  G L
Sbjct: 64  RNIVNDERFTFVRSNFRYLHNFLRYYGVEKVDAILADLGVSSHHFDDSERGFSFRFDGNL 123

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  +GI+A+D+VN    + L  +  + GE K + ++A  +VK R S    T  D  
Sbjct: 124 DMRMNKRAGITAADIVNTYEEERLADLFYLYGELKNSRKLAATLVKARSSKKIVTIGDFL 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +++    + +        + FQALRI VN E+E L + L +A +ALK GG L V+++HS
Sbjct: 184 DIVKPL--YGREREKKELAKVFQALRIEVNQEMEALKEMLYAATEALKPGGRLSVITYHS 241

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK    + + +  +V+    +   P  F+ +  KV+VPT+E++  N RSRSAKLR
Sbjct: 242 LEDRIVKNVMKTGNAEGKSVQDFYGNVQSP--FRLVNNKVIVPTEEEIIRNPRSRSAKLR 299

Query: 313 AGMR 316
              +
Sbjct: 300 IAEK 303


>gi|62178687|ref|YP_215104.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|68565397|sp|Q57TD8|RSMH_SALCH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|62126320|gb|AAX64023.1| putative S-adenosyl methionine adenyltransferase [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
          Length = 312

 Score =  365 bits (937), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 120/312 (38%), Positives = 181/312 (58%), Gaps = 19/312 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++  Q
Sbjct: 5   KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAQ 64

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +FS+    FS L DYV ++     +DG++ DLGVSS Q+D  +RGFSF + G
Sbjct: 65  TI---NDPRFSIIHGPFSALADYVAEREFTGKIDGILLDLGVSSPQLDDAERGFSFMRDG 121

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   T++
Sbjct: 122 PLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIARAIVERNREQPMTRTKE 181

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L ++SF
Sbjct: 182 LAEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSIISF 240

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305
           HSLEDR+VK+F   +S        +  + A          +++ K  ++P +++VA N R
Sbjct: 241 HSLEDRIVKRFMREQSRGPQVPAGLPMTEAQRKKLGGRELRALGK--LMPGEKEVAENPR 298

Query: 306 SRSAKLRAGMRT 317
           +RS+ LR   RT
Sbjct: 299 ARSSVLRIAERT 310


>gi|238022305|ref|ZP_04602731.1| hypothetical protein GCWU000324_02212 [Kingella oralis ATCC 51147]
 gi|237866919|gb|EEP67961.1| hypothetical protein GCWU000324_02212 [Kingella oralis ATCC 51147]
          Length = 324

 Score =  365 bits (937), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 113/321 (35%), Positives = 172/321 (53%), Gaps = 12/321 (3%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           M+ A       H+ VLL + +  LN     + +D TFG GG+SR           ++  D
Sbjct: 1   MNLAAKPKSFQHITVLLNEAVDALNIQENGIYVDGTFGRGGHSRLILSKLGEKGRLVVFD 60

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGD 122
           +DP A++  ++ +     + S+    FS  Q  + + GV   DG +FDLG+SS QID   
Sbjct: 61  KDPQAIAVARD-LAAQDARVSVVHNGFSHFQAALDELGVAKIDGALFDLGISSPQIDDAS 119

Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF+   PLDMRM  + G SA+D +  A+  ++  ++   GEE+ +  IA AIV +R 
Sbjct: 120 RGFSFRFDAPLDMRMDTTRGQSAADWLAVASEDEINEVIKNYGEERFSRAIARAIVAQRG 179

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
             P  TT  L+ +  + V   +  +  PATR+FQA+RIF+N E++E+   L  A + L  
Sbjct: 180 ETPIDTTSKLAKIAAQCVRTRERGQ-DPATRTFQAIRIFINRELDEIQAVLPQAVERLNL 238

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQED 299
           GG L V++FHSLEDRLVK+F    +      +  +   ++      ++I  K +  + E+
Sbjct: 239 GGRLAVIAFHSLEDRLVKQFIRQYATHAPLPKWAMVREADLPQPPLRAI-GKAIKASAEE 297

Query: 300 VAFNRRSRSAKLRAGMRTVER 320
           VA N R+RSA LR   RT  R
Sbjct: 298 VAANPRARSAVLRVAERTAGR 318


>gi|16126800|ref|NP_421364.1| hypothetical protein CC_2562 [Caulobacter crescentus CB15]
 gi|221235581|ref|YP_002518018.1| S-adenosyl-methyltransferase MraW [Caulobacter crescentus NA1000]
 gi|20139272|sp|Q9RQJ6|RSMH_CAUCR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446411|sp|B8H0A2|RSMH_CAUCN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|6318314|gb|AAF06834.1|AF099190_2 unknown [Caulobacter crescentus CB15]
 gi|13424128|gb|AAK24532.1| conserved hypothetical protein [Caulobacter crescentus CB15]
 gi|220964754|gb|ACL96110.1| S-adenosyl-methyltransferase mraW [Caulobacter crescentus NA1000]
          Length = 311

 Score =  365 bits (937), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 139/311 (44%), Positives = 200/311 (64%), Gaps = 5/311 (1%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQ 75
           +   H+ VLL++V+  L+  PG V++D TFGAGGY+R+    G++V+A DRDP       
Sbjct: 2   SAAPHISVLLDEVVEALDAKPGDVVVDGTFGAGGYTRAVLPTGASVVAFDRDPTVRQFAA 61

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
                  ++F L QA FS++ D +  + V+GV+ DLGVSSMQ+D  +RGFSF + GPLDM
Sbjct: 62  NL---PADRFRLVQARFSEMLDELGPESVEGVMLDLGVSSMQLDQAERGFSFMRDGPLDM 118

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RM  +G +A+D+VN  +  +L +IL + GEE  + RIA  I++RR+  PF+ T DL+ +I
Sbjct: 119 RMGDTGPTAADLVNTLDHAELAKILYVYGEEHASRRIASFILRRREERPFERTLDLAEVI 178

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           ++ V   K  ++HPATRSFQ LRI VN+E+ EL  GL +AE+ LK GG L+VV+FHSLED
Sbjct: 179 ERAVGGRKGAKVHPATRSFQGLRIAVNDELGELEAGLAAAERVLKPGGRLVVVTFHSLED 238

Query: 256 RLVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           R+VK F A R+GK           +      FQ I+ K + P++ ++A N R+RS+KLRA
Sbjct: 239 RIVKAFLAERAGKAPGGSRHAPPVAAGAAPSFQLISNKAIAPSEAELAVNPRARSSKLRA 298

Query: 314 GMRTVERSIED 324
            +RT     E 
Sbjct: 299 AVRTDAPVWEA 309


>gi|90407776|ref|ZP_01215954.1| S-adenosyl-methyltransferase [Psychromonas sp. CNPT3]
 gi|90311136|gb|EAS39243.1| S-adenosyl-methyltransferase [Psychromonas sp. CNPT3]
          Length = 313

 Score =  365 bits (937), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 126/312 (40%), Positives = 186/312 (59%), Gaps = 12/312 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
           +H+ VLL++ +  L      + +DATFG GG+SR   K       +IA+DRDP A+    
Sbjct: 3   EHITVLLDEAVNGLAIKEEGIYIDATFGRGGHSRHILKQLGPKGRLIAIDRDPRAIVTA- 61

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           E +     +FS+    FS L +YV + G    +DGV+ DLGVSS Q+D  +RGFSF + G
Sbjct: 62  ELLMQEDARFSIIHGPFSDLANYVKELGLAGQIDGVLLDLGVSSPQLDEAERGFSFMRDG 121

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + GISA+  + +A+V+D++ +L   GEEK A RIA AIV  R+  PF  T D
Sbjct: 122 PLDMRMDPTTGISAAQWLAKADVEDISWVLKTFGEEKFAYRIARAIVADREETPFLRTLD 181

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L++LI +     +  + HPATRSFQA+RI+VN+E+EE+ + L  A   L   GLL V+SF
Sbjct: 182 LANLISRLCP-KREKKKHPATRSFQAIRIYVNSELEEIHKVLDGALDILAIDGLLSVISF 240

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT--KKVVVPTQEDVAFNRRSRS 308
           HSLEDR+VK+F   +         +  ++A     +++    K + P+  ++  N+RSRS
Sbjct: 241 HSLEDRIVKRFIRKQEKGREYPPGLPLTDAQMQSGKTMKAQGKALKPSAGEIEQNKRSRS 300

Query: 309 AKLRAGMRTVER 320
           + LR   +T + 
Sbjct: 301 SVLRVAKKTAQP 312


>gi|261365120|ref|ZP_05978003.1| S-adenosyl-methyltransferase MraW [Neisseria mucosa ATCC 25996]
 gi|288566552|gb|EFC88112.1| S-adenosyl-methyltransferase MraW [Neisseria mucosa ATCC 25996]
          Length = 317

 Score =  365 bits (937), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 117/317 (36%), Positives = 170/317 (53%), Gaps = 14/317 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           MS+A +     H+ VLL + +  L      + +D TFG GG+SR           +I  D
Sbjct: 1   MSNAEYQ----HITVLLNEAVDALAVREDGIYVDGTFGRGGHSRLILSRLGSQGRLIVFD 56

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGD 122
           +DP A+    + + +   + ++    FS  Q  +   G+   DG +FDLG+SS QID G 
Sbjct: 57  KDPQAIEAA-QKLAEQDGRVTVVHDGFSSFQTTLDKLGIEEIDGALFDLGISSPQIDDGA 115

Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF+   PLDMRM  + G+SA+D +  A+ +DL  ++   GEE+ + +IA AIV +R 
Sbjct: 116 RGFSFRFDAPLDMRMDPTRGMSAADWIATASEQDLHEVIKNYGEERFSRQIARAIVAQRA 175

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
             P  TT+ L+ L+ + V   +  +  PATR+FQA+RIF+N E+EE+   L      LK 
Sbjct: 176 ENPIDTTRKLAQLVAQNVRTRERGQ-DPATRTFQAVRIFINRELEEVEAVLPQVMGRLKE 234

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDV 300
           GG L V++FHSLEDR+VK+F    S      R   +     P        K + P  E+ 
Sbjct: 235 GGRLAVIAFHSLEDRIVKQFVKKYSQHPPLPRWAAVKEADLPLPPLKAVGKAIKPGVEET 294

Query: 301 AFNRRSRSAKLRAGMRT 317
           A N R+RSA LR   RT
Sbjct: 295 ASNPRARSAVLRVAERT 311


>gi|290581041|ref|YP_003485433.1| hypothetical protein SmuNN2025_1515 [Streptococcus mutans NN2025]
 gi|254997940|dbj|BAH88541.1| conserved hypothetical protein [Streptococcus mutans NN2025]
          Length = 316

 Score =  365 bits (937), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 101/321 (31%), Positives = 165/321 (51%), Gaps = 15/321 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           M++  H     H+ VLL + I +L+  P  + +DAT G  G+S           ++   D
Sbjct: 1   MTNDFH-----HITVLLHETIDMLDIKPDGIYVDATLGGAGHSECLLSKLGKEGHLYCFD 55

Query: 66  RDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120
           +D  A+   +  ++ Y    Q S  +  F  L+  + D+G+   DG+ +DLGVSS Q+D 
Sbjct: 56  QDQKAIDNAKIRLQQYVKTGQVSFIKDNFRHLKSRLADEGIYEIDGICYDLGVSSPQLDE 115

Query: 121 GDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS++K  PLDMRM+    ++A DVVN  + +DL R+    GE+K + +IA  I   
Sbjct: 116 RERGFSYKKDAPLDMRMNQDAQLTAFDVVNTYDYRDLVRLFFKYGEDKFSKQIARKIESA 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R+    +TT +L+ +I+      +   + HPA + FQA+RI VN+E+    + L  A   
Sbjct: 176 RKEKLIETTAELAEIIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAAEESLTQALDL 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L   G + V++FHSLEDRL K+ F   +   +              F  + +K ++P   
Sbjct: 236 LALNGRIAVITFHSLEDRLTKQLFKEVTTLDVPKGLPFVPENLQPKFSLVNRKPILPNVR 295

Query: 299 DVAFNRRSRSAKLRAGMRTVE 319
           +++ N R+ SAKLR   +   
Sbjct: 296 ELSENNRAHSAKLRVIQKIRN 316


>gi|227327098|ref|ZP_03831122.1| S-adenosyl-methyltransferase MraW [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 314

 Score =  364 bits (936), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 119/311 (38%), Positives = 180/311 (57%), Gaps = 18/311 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H  VLL++ +  LN   G + +D TFG GG+SR           ++A+DRDP A+   +
Sbjct: 6   KHTTVLLDEAVNGLNIRSGGIYIDGTFGRGGHSRLILSQLGPEGRLLAIDRDPQAIEAAR 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +FS+    FS + +YV + G    +DGV+ DLGVSS Q+D  +RGFSF + G
Sbjct: 66  ---AIDDPRFSIIHGPFSAMAEYVAELGLTGQIDGVLLDLGVSSPQLDDPERGFSFMRDG 122

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + G+SA++ + +A   D+  +L   GEE+ A RIA AIV+R +  P   T++
Sbjct: 123 PLDMRMDPTRGLSAAEWLMKAEADDIVWVLKTFGEERFAKRIARAIVERNRLDPMTRTKE 182

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ LI       + ++ HPATRSFQA+RI++N+E+EE+ + L  A   L   G L V+SF
Sbjct: 183 LAELIAAASPIREKHK-HPATRSFQAIRIYINSELEEIERALEGALSVLAPQGRLSVISF 241

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNRR 305
           HSLEDR+VK+F   +S        +  +            +++ KK ++P++E+VA N R
Sbjct: 242 HSLEDRIVKRFIRHQSRGPQVPAGLPLTEEQLRSQGGQTLKAVGKK-LMPSEEEVAENPR 300

Query: 306 SRSAKLRAGMR 316
           +RS+ LR   R
Sbjct: 301 ARSSVLRFAER 311


>gi|227538294|ref|ZP_03968343.1| S-adenosylmethionine-dependent methyltransferase involved in cell
           envelope biogenesis [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227241809|gb|EEI91824.1| S-adenosylmethionine-dependent methyltransferase involved in cell
           envelope biogenesis [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 303

 Score =  364 bits (936), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 121/304 (39%), Positives = 165/304 (54%), Gaps = 16/304 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           HVPV+L++ I  L+  P  V +D TFG GG+SR   K       + A D+DP A+     
Sbjct: 6   HVPVMLKECIDALSIKPDGVYVDVTFGGGGHSREILKHLGPKGRLFAFDQDPDALENTIA 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                 E+F+L    F  L++ +   GV   DG++ DLGVSS Q D  DRGFS +    L
Sbjct: 66  -----DERFTLIHQNFRFLKNNLRLNGVKEVDGILADLGVSSHQFDAADRGFSIRFDADL 120

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM   S + A  V+N    +DL RI G+ GE   A  +A  +V  R SAP +T   L 
Sbjct: 121 DMRMDQVSDLDAKKVLNTYAEEDLHRIFGMYGEIMNAKSLAKTVVTARLSAPIETVAGLK 180

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I+K V   K ++ H   + FQALRI VN E+E L + L      LK  G L+V+S+HS
Sbjct: 181 EVIRKLVPKGKEHKYH--AQVFQALRIEVNKELEALQEFLLQTVSTLKPSGKLVVMSYHS 238

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDRLVK F A    K    +    +   P  FQ IT+K +  ++E+++ N RSRSAKLR
Sbjct: 239 LEDRLVKNFMAKGKFKGEVEKDFFGNEIKP--FQVITRKAITASEEELSTNNRSRSAKLR 296

Query: 313 AGMR 316
              +
Sbjct: 297 VAEK 300


>gi|332305217|ref|YP_004433068.1| S-adenosyl-methyltransferase MraW [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172546|gb|AEE21800.1| S-adenosyl-methyltransferase MraW [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 311

 Score =  364 bits (936), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 125/311 (40%), Positives = 182/311 (58%), Gaps = 13/311 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
           T   H+ VLL++ +  L+  P  V LDATFG GG+S+           +IALDRDP A+ 
Sbjct: 3   TQTSHLSVLLQESLDGLSIKPDGVYLDATFGRGGHSKQILTQLSDKGRLIALDRDPSAIK 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             +    D   +FS+    FS+++D +        VDG++ DLGVSS Q+D  +RGFSF 
Sbjct: 63  SAKALAND--PRFSIHHCNFSEMEDVLTSLELHGKVDGILMDLGVSSPQLDEPERGFSFM 120

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           + GPLDMRM+ + G SA+  +  A  +D+ +++   GEEK   RIAH IV  RQ AP  T
Sbjct: 121 REGPLDMRMNPTKGQSAAQWLAHAEEQDIAQVIKEFGEEKFGKRIAHGIVNARQQAPITT 180

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T  L+ +I   V   K+   HPATRSFQ +RI++N+E++E+  GL+SA  +L +GG L V
Sbjct: 181 TAQLAEIIDIAVPV-KDKFKHPATRSFQGIRIYINSELDEIRTGLKSALNSLNSGGRLSV 239

Query: 248 VSFHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           +SFHSLEDRLVK+F   +S   +V     ++ S            K + P+ E+++ N R
Sbjct: 240 ISFHSLEDRLVKRFIREQSRGLQVPHGLPIMQSEIDSHKALKAIGKAIKPSSEELSRNVR 299

Query: 306 SRSAKLRAGMR 316
           +RS+ LR   +
Sbjct: 300 ARSSVLRVAEK 310


>gi|114570636|ref|YP_757316.1| S-adenosyl-methyltransferase MraW [Maricaulis maris MCS10]
 gi|123127593|sp|Q0AMV9|RSMH_MARMM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|114341098|gb|ABI66378.1| S-adenosyl-methyltransferase MraW [Maricaulis maris MCS10]
          Length = 334

 Score =  364 bits (936), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 130/332 (39%), Positives = 195/332 (58%), Gaps = 9/332 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCG 74
           ++  H+PV++ +V+  L P  G + +D TFGAGGYSR         +I +DRDP      
Sbjct: 2   SVAPHIPVMMSEVLHALEPRSGALYIDGTFGAGGYSRGILSAADCKLIGIDRDPAVQPTA 61

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            + ++    +F+  +A FS + + +  +G   VDG+V D+GVSSMQID  +RGFSF + G
Sbjct: 62  TQLVQASGGRFAFAEAPFSAMGEVLASRGIDQVDGIVLDIGVSSMQIDQAERGFSFMRKG 121

Query: 132 PLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           PLDMRM+ SG +A+D VN+    +L  I  + GEE+++ RIA  I   R  A  +TT  L
Sbjct: 122 PLDMRMAASGPTAADAVNRLKEAELADIFYVYGEERRSRRIAKFICTARAEAKIETTDRL 181

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++ +     K+++IHPAT+ FQALRIFVN+E+ ELA+ L ++E+ L   G L+VV+FH
Sbjct: 182 AEIVTRAT-GGKHSKIHPATKVFQALRIFVNDELGELARALEASERLLAPLGRLVVVTFH 240

Query: 252 SLEDRLVKKFFASRSGKVMAVR---HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SLEDR+VK F  SR+G                    F  +T++ V  + E+ A N R+RS
Sbjct: 241 SLEDRMVKTFLRSRAGLAGGGGSRYEPAVEAGPAPSFSLLTRRAVSASDEEAAENPRARS 300

Query: 309 AKLRAGMRTVERSIEDDSFVHLPRLPTLSQFR 340
           AKLRA +R    +  D   +H   +P L++  
Sbjct: 301 AKLRAAIRNEAPAWSDSPSLHTSIVP-LARLE 331


>gi|139473295|ref|YP_001128010.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes str.
           Manfredo]
 gi|54037825|sp|P65432|RSMH_STRP3 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|54037826|sp|P65433|RSMH_STRP8 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|54041488|sp|P65431|RSMH_STRP1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|88909223|sp|Q48RZ0|RSMH_STRPM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262826830|sp|A2RD40|RSMH_STRPG RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262831446|sp|Q1JAG5|RSMH_STRPB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262831450|sp|Q1JKL7|RSMH_STRPC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262831454|sp|Q1JFK8|RSMH_STRPD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|134271541|emb|CAM29765.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes str.
           Manfredo]
          Length = 316

 Score =  364 bits (936), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 103/320 (32%), Positives = 169/320 (52%), Gaps = 15/320 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           M+   H     HV VLL + + +L+  P  + +DAT G  G+S           ++   D
Sbjct: 1   MTKEFH-----HVTVLLHETVDMLDIKPDGIYVDATLGGSGHSAYLLSKLGEEGHLYCFD 55

Query: 66  RDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDC 120
           +D  A+   Q T++ Y  K Q +  +  F  L+  +   GVD   G+++DLGVSS Q+D 
Sbjct: 56  QDQKAIDNAQVTLKSYIDKGQVTFIKDNFRHLKARLTALGVDEIDGILYDLGVSSPQLDE 115

Query: 121 GDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS+++  PLDMRM    + +A +VVN     DL +I    GE+K + +IA  I + 
Sbjct: 116 RERGFSYKQDAPLDMRMDRQSLLTAYEVVNTYPFNDLVKIFFKYGEDKFSKQIARKIEQA 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R   P +TT +L+ LI+      +   + HPA + FQA+RI VN+E+    + ++ A + 
Sbjct: 176 RAIKPIETTTELAELIKAAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQDAMEL 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L   G + V++FHSLEDRL K+ F   S   +     +        F+ +++K ++P+  
Sbjct: 236 LALDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPLIPEDMKPKFELVSRKPILPSHS 295

Query: 299 DVAFNRRSRSAKLRAGMRTV 318
           ++  N+R+ SAKLR   +  
Sbjct: 296 ELTANKRAHSAKLRVAKKIR 315


>gi|291563991|emb|CBL42807.1| S-adenosyl-methyltransferase MraW [butyrate-producing bacterium
           SS3/4]
          Length = 311

 Score =  364 bits (936), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 102/309 (33%), Positives = 176/309 (56%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSC 73
           I +H  VLL + +  LN  P  + +D T G GG++    +       +I +D+D  A++ 
Sbjct: 2   IFEHKSVLLMETVDSLNVKPDGIYVDGTLGGGGHAYEVSRRLGEKGRLIGIDQDADAIAA 61

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
             E +  +K++ ++ ++ +  +++ + + G   VDG+  DLGVSS Q+D  DRGFS+++ 
Sbjct: 62  ATERLLPFKDKVTIVRSNYKNIREVLFNLGIEKVDGIYLDLGVSSYQLDTADRGFSYRED 121

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM   +  +A+D+VN  +  +L RI+   GE++ A  IA  IV+ R+  P +TT 
Sbjct: 122 APLDMRMDQRNDKTAADIVNGYSEMELYRIIRDYGEDRFAKNIAKHIVREREIHPIETTL 181

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L+ +I+  +    +    HPA R+FQA+RI +N+E++ L   + +    L  GG L ++
Sbjct: 182 QLAEIIRGAIPAKIRAEGGHPAKRTFQAIRIELNHELDVLNDSIDTMIDLLNPGGRLSII 241

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+VK  F +     +      +      +  + +T+K +VP+ E++  NRRS+
Sbjct: 242 TFHSLEDRIVKTRFRTNENPCICPPDFPVCVCGRKSKGRVVTRKPIVPSDEELEENRRSK 301

Query: 308 SAKLRAGMR 316
           S+KLR   R
Sbjct: 302 SSKLRVFER 310


>gi|330811587|ref|YP_004356049.1| S-adenosyl-methyltransferase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379695|gb|AEA71045.1| S-adenosyl-methyltransferase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 315

 Score =  364 bits (936), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 120/308 (38%), Positives = 182/308 (59%), Gaps = 12/308 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
           +H+ VLL++ +  L   P    LD TFG GG+SR        G  ++  D+DP A++ GQ
Sbjct: 8   NHITVLLDEAVEALAVRPDGCYLDGTFGRGGHSRLILSKLGPGGRLLGFDKDPQAIATGQ 67

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
             +     +F + Q +F++L   V ++G    V GV+ DLGVSS Q+D  +RGFSF   G
Sbjct: 68  A-LAAEDGRFVIVQRSFAELASEVAERGLAGKVSGVLLDLGVSSPQLDDPERGFSFLNDG 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  S GISA++ VN A V+++ R+    GEE+ + R+A A+V+RR   PF+ T D
Sbjct: 127 PLDMRMDPSRGISAAEFVNTAPVEEIARVFKEYGEERFSGRMARAVVERRDIKPFERTGD 186

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ +++      +  + +PATR+FQ LRI VNNE+ +L  GL +A +AL+ GG L+V+SF
Sbjct: 187 LAEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEVGLEAALEALEIGGRLVVISF 245

Query: 251 HSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+VK F    + G+   +   +P      V +  I  K    ++ ++  N R+RS
Sbjct: 246 HSLEDRIVKLFMRKLTKGEADNLPRNLPVRFEAFVPKIKIHGKAQFASEAELKANPRARS 305

Query: 309 AKLRAGMR 316
           A +R   +
Sbjct: 306 AVMRVAEK 313


>gi|302383891|ref|YP_003819714.1| S-adenosyl-methyltransferase MraW [Brevundimonas subvibrioides ATCC
           15264]
 gi|302194519|gb|ADL02091.1| S-adenosyl-methyltransferase MraW [Brevundimonas subvibrioides ATCC
           15264]
          Length = 317

 Score =  364 bits (935), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 142/316 (44%), Positives = 190/316 (60%), Gaps = 5/316 (1%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQ 75
           +   H PVLL +V+  L P  G VI+DATFGAGGY+R+    G+ VIALDRDP       
Sbjct: 2   SPAPHAPVLLAEVLEALAPKAGDVIIDATFGAGGYTRAILATGATVIALDRDPTVQPHAD 61

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
               D+  +F+L +  FS L D   D G   +DG+VFD+GVSSMQ+D  +RGFSF + GP
Sbjct: 62  AVANDHPGRFTLVRTPFSGLADAFADSGAARLDGIVFDIGVSSMQLDEAERGFSFMRDGP 121

Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           LDMRMS  G SA+D+VN  +   L  IL   G+E+Q+ RIA AI++RR   PF  T DL+
Sbjct: 122 LDMRMSRDGDSAADIVNTWDHGPLAHILKQYGDERQSGRIATAILRRRTVQPFTRTLDLA 181

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            ++++ +   +    HPATR+FQALRI VN+E+ EL  GL++AE AL  GG L VV+FHS
Sbjct: 182 DVVERALGGRRGAPTHPATRTFQALRIAVNDELGELTAGLQAAEAALSPGGRLAVVTFHS 241

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           LEDR+VK F   R+G         P         F    K      + ++A N R+RSAK
Sbjct: 242 LEDRIVKAFLTERTGNAPGGSRHAPMAVETRKPSFTLSFKGAREAGEAELAANPRARSAK 301

Query: 311 LRAGMRTVERSIEDDS 326
           LRA +RT   + +  +
Sbjct: 302 LRAAVRTDAPAWKAAA 317


>gi|325847850|ref|ZP_08170072.1| S-adenosyl-methyltransferase MraW [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325480868|gb|EGC83921.1| S-adenosyl-methyltransferase MraW [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 306

 Score =  364 bits (935), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 115/306 (37%), Positives = 164/306 (53%), Gaps = 12/306 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H  VLL + I  LN     +  D T G GG+S+   K  S    ++ LD+D  A+   +E
Sbjct: 5   HKSVLLNETIKNLNIKEDGIYADLTLGKGGHSKEILKNLSPEGLLVGLDQDKDAIKAAKE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++D+      F   F ++ D +       +DG + D+GVSS QID GDRGFS+ K GPL
Sbjct: 65  NLKDF-SNVLYFNENFEKISDVLDKASLKMIDGALMDIGVSSYQIDNGDRGFSYMKDGPL 123

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  + ++A  +VN  ++ +L  I    GEE+ +  IA AIV  R+     TT  L 
Sbjct: 124 DMRMNKDNELTAKQIVNDYSLDELWEIFSKYGEERYSKTIAKAIVDYRKLHEINTTLQLR 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +++ K+V     N  HP  R FQALRI VN E+E L   L      L  GG L V++FHS
Sbjct: 184 NIVMKSVVT---NEAHPEKRVFQALRIEVNRELEVLENTLEKIVDRLNKGGRLCVITFHS 240

Query: 253 LEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK  F   S K +      +    H    + I+KK ++P+++++  NRRS SAKL
Sbjct: 241 LEDRIVKNKFKEMSKKCICPPEFPVCVCNHEKKVKIISKKPILPSKDELKTNRRSHSAKL 300

Query: 312 RAGMRT 317
           R   R 
Sbjct: 301 RVCERV 306


>gi|67459296|ref|YP_246920.1| S-adenosyl-methyltransferase MraW [Rickettsia felis URRWXCal2]
 gi|75536274|sp|Q4UL18|RSMH_RICFE RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|67004829|gb|AAY61755.1| S-adenosyl-methyltransferase MraW [Rickettsia felis URRWXCal2]
          Length = 306

 Score =  364 bits (935), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 126/303 (41%), Positives = 185/303 (61%), Gaps = 5/303 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETM 78
           H+PV+L +++A L P  G+  LD TFGAGGYS++  +     + ALDRDP  +   +E  
Sbjct: 5   HIPVMLNEMLANLAPKDGEFYLDCTFGAGGYSKAILESCDCYITALDRDPNVIKKAEEIK 64

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138
           ++Y E+F   +  F+     + +K  DGVV DLGVSSMQ+D  DRGFSF   GPLDMRMS
Sbjct: 65  QNYGERFDFIETNFADSFAKLKEKKFDGVVLDLGVSSMQLDIADRGFSFLHDGPLDMRMS 124

Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198
             G+SA + VN A  K+L  ++   G+E  + RIA  IV+ R++    +T  L+ +++ +
Sbjct: 125 GQGLSAEEFVNIAEEKELADVIYKYGDESFSRRIAKRIVEYRKTTRIDSTGKLAQIVRSS 184

Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258
           + F K  +I PAT++FQA+RI++NNE+ EL + L + +  LK  G L+VVSFHSLEDR+V
Sbjct: 185 IGFRK-GKIDPATKTFQAIRIYINNELGELERFLANVKNILKKDGRLVVVSFHSLEDRIV 243

Query: 259 KKFFASRSGKVMAVRHMIPSN---AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           K FF   S K +A       +         + IT K +  + ++V  N R+RSAKLRA  
Sbjct: 244 KNFFKENSEKPVARSKYAKDDIAIDPDKWLKIITNKALATSDKEVGLNIRARSAKLRAAK 303

Query: 316 RTV 318
           + +
Sbjct: 304 KIL 306


>gi|183599909|ref|ZP_02961402.1| hypothetical protein PROSTU_03430 [Providencia stuartii ATCC 25827]
 gi|188022184|gb|EDU60224.1| hypothetical protein PROSTU_03430 [Providencia stuartii ATCC 25827]
          Length = 316

 Score =  364 bits (935), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 124/322 (38%), Positives = 177/322 (54%), Gaps = 22/322 (6%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69
           +      HV VLL++ +  LN  P  + +D TFG GG+SR           +IA+DRDP 
Sbjct: 1   MTQQQFKHVTVLLDEAVNGLNIKPNGIYIDGTFGRGGHSRLILSQLNEQGRLIAIDRDPE 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGF 125
           A+   QE       +F +    FS + +YV ++G    +DGV+ DLGVSS Q+D  +RGF
Sbjct: 61  AIKAAQEI---DDPRFMIKHGPFSAIAEYVEEEGLVGKIDGVLLDLGVSSPQLDDPERGF 117

Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR---Q 181
           SF + GPLDMRM  + G SA   +  A   D+  +L   GEE+ A RIA AIV+R    +
Sbjct: 118 SFMRDGPLDMRMDPTKGQSAQQWLMNAQADDIAWVLKTFGEERFAKRIAKAIVERNHNPE 177

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
             P   T++L+ LI K     + ++ HPATRSFQA+RI++N+E+EE+ Q L  A   L  
Sbjct: 178 ETPLTRTRELAELIAKVSPIKERHK-HPATRSFQAIRIYINSELEEIEQALEGAVSVLAP 236

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPT 296
            G L V+SFHSLEDRLVK+F    S        +  + A       A  + + K  + P+
Sbjct: 237 EGRLSVISFHSLEDRLVKRFIRQNSKGPSVPAGIPLTEAQIRELGVAKLREVGK--MKPS 294

Query: 297 QEDVAFNRRSRSAKLRAGMRTV 318
             ++  N R+RS+ LR   RT+
Sbjct: 295 DAEIDENPRARSSVLRFAQRTL 316


>gi|150009093|ref|YP_001303836.1| S-adenosyl-methyltransferase MraW [Parabacteroides distasonis ATCC
           8503]
 gi|167011834|sp|A6LEV0|RSMH_PARD8 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|149937517|gb|ABR44214.1| S-adenosyl-methyltransferase MraW [Parabacteroides distasonis ATCC
           8503]
          Length = 305

 Score =  364 bits (935), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 108/306 (35%), Positives = 165/306 (53%), Gaps = 17/306 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           HVPV+L + +  L+  P  + +D TFG GG+SR   K       +   D+D  A      
Sbjct: 9   HVPVMLRESLEGLDIRPDGIYVDVTFGGGGHSREILKRLGSEGELYGFDQDADAEHNV-- 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  +F+  ++ F  L +++   G    VDG++ DLGVSS   D  DRGFSF+  G 
Sbjct: 67  ---PADPRFTFVRSNFRYLYNFMRYYGESGEVDGLLADLGVSSHHFDDKDRGFSFRFDGT 123

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+  +G +A+D+VN    + L  +  + GE K + ++A  +VK R++   +T  D 
Sbjct: 124 LDMRMNTRAGQTAADIVNNYTAEALADVFYLYGELKVSRKLASVLVKARETKKIETIGDF 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             +I+      K+       + FQALRI VN+E+  L + LRS  + L+ GG L+V+++H
Sbjct: 184 LEVIKPFT--GKDKEKKFLAQVFQALRIEVNDEMRALKEMLRSTLRVLRPGGRLVVITYH 241

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDRLVK F  + + +    +    +   P  F+ +  KV+VPT E+V  N RSRSAKL
Sbjct: 242 SLEDRLVKNFLKTGNFEGKCEQDFFGNVRSP--FRLVNNKVIVPTDEEVERNPRSRSAKL 299

Query: 312 RAGMRT 317
           R   + 
Sbjct: 300 RIAEKV 305


>gi|149914518|ref|ZP_01903048.1| S-adenosyl-methyltransferase MraW [Roseobacter sp. AzwK-3b]
 gi|149811311|gb|EDM71146.1| S-adenosyl-methyltransferase MraW [Roseobacter sp. AzwK-3b]
          Length = 331

 Score =  364 bits (935), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 143/330 (43%), Positives = 196/330 (59%), Gaps = 8/330 (2%)

Query: 9   MSSAIH--HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALD 65
           M++A         H+PVLL  ++  + P    V +D T GAGGY+R   + G+  VI +D
Sbjct: 1   MAAAAQAPDPSAPHIPVLLRPLLEAVAPVE-GVWIDGTLGAGGYTRGLLEAGAQTVIGVD 59

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125
           RDP A+         Y ++  L Q  FS +  +  D  VDGVV DLGVSSMQ+D  +RGF
Sbjct: 60  RDPLALEMAALWGAAYGDRLVLVQDIFSNMDAHASD--VDGVVLDLGVSSMQLDRAERGF 117

Query: 126 SFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           SF + GPLDMRMS  G +A+D+VN A+  +L  IL + GEE+ + RIA AI++ R S   
Sbjct: 118 SFMRDGPLDMRMSQQGPTAADLVNTADEGELADILYLYGEERASRRIARAILRERASGDI 177

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            TT  L+ +I+  +   K  ++HPATRSFQALRI VN+E  EL  GL +AE+ALK GG L
Sbjct: 178 DTTLHLARIIESCLPRPKPGQVHPATRSFQALRIAVNDEFGELVAGLEAAERALKPGGKL 237

Query: 246 IVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
            VV+FHS+EDR+VK+F  ++S       RH       PA F    +K + P + ++A N 
Sbjct: 238 AVVTFHSIEDRMVKRFLQAKSAGGGGGSRHAPAMRPEPAEFDVTQRKAIGPDKSELAENP 297

Query: 305 RSRSAKLRAGMRT-VERSIEDDSFVHLPRL 333
           RSRSAKLR  +RT    +  D   + +P L
Sbjct: 298 RSRSAKLRVAIRTDAAATPADRKAIGMPLL 327


>gi|307824823|ref|ZP_07655046.1| S-adenosyl-methyltransferase MraW [Methylobacter tundripaludum
           SV96]
 gi|307734181|gb|EFO05035.1| S-adenosyl-methyltransferase MraW [Methylobacter tundripaludum
           SV96]
          Length = 308

 Score =  364 bits (935), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 122/310 (39%), Positives = 181/310 (58%), Gaps = 14/310 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAV--SC 73
           +H+PV+  + +  L      V LD TFG GG+S+    +      ++A DRD  A+    
Sbjct: 2   EHLPVMFAEALQQLAIKEDGVYLDCTFGRGGHSQGILNLLGPSGRLLAFDRDLDAINSDY 61

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQK 129
            Q  + D  ++F L    FS L++ V  +G    VDG++ DLGVSS Q+D  +RGFSF +
Sbjct: 62  AQAMLED--KRFKLKHTHFSALENIVVSEGLAGKVDGILMDLGVSSPQLDNPERGFSFLR 119

Query: 130 SGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM   SG++A   +   + K L ++L   GEE+ A RIA AIV++R  +P  TT
Sbjct: 120 DGPLDMRMDGNSGVTAEQWLAGVDEKALVKVLFEYGEERFARRIARAIVEKRAVSPITTT 179

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           ++L+ LI+  V   + ++ HPATRSFQA+RI +N+E++EL   L+ + + LK GG L+V+
Sbjct: 180 RELAKLIEDVVPGKEKHK-HPATRSFQAIRIEINSELDELKAVLQQSARILKPGGRLVVI 238

Query: 249 SFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           SFHSLEDR+VK+F  + SG K    +  I           IT K +    +++A N R+R
Sbjct: 239 SFHSLEDRIVKRFIRAESGAKYNPGKLPIKEIDIAKGILKITGKALKAGAQEIAQNPRAR 298

Query: 308 SAKLRAGMRT 317
           SA +R   R 
Sbjct: 299 SAVMRVAERV 308


>gi|89095267|ref|ZP_01168188.1| S-adenosyl-methyltransferase [Oceanospirillum sp. MED92]
 gi|89080474|gb|EAR59725.1| S-adenosyl-methyltransferase [Oceanospirillum sp. MED92]
          Length = 312

 Score =  364 bits (935), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 111/309 (35%), Positives = 168/309 (54%), Gaps = 11/309 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQ 75
            H+ VLL++ +  L        +D TFG GG+S    +       ++ +D+DP A++   
Sbjct: 6   KHITVLLDEAVDALVQDKSGFYVDGTFGRGGHSSLVLQGLDENGRLMGIDKDPTAIAHAH 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           E  +D +E+FS+   +F+QLQ +V ++G    VDGV+ DLGVSS Q+D   RGFSF   G
Sbjct: 66  ERFKD-EERFSIAHGSFAQLQQFVTERGMDGKVDGVLLDLGVSSPQLDDASRGFSFLNDG 124

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  S G SA++ + +A   ++  ++   GEEK + R+A AIV  R   P  TT  
Sbjct: 125 PLDMRMDTSSGESAAEWIARAEESEIADVIYTYGEEKFSRRMAKAIVNYRAETPITTTAQ 184

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ +I +     +  + +PATR+FQ +RI +N E+E+L + L  A   LK GG L+V+SF
Sbjct: 185 LAKIIAEANPAWEKGK-NPATRAFQGIRIHINKELEDLEKCLDQALDMLKVGGRLVVISF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT-KKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK+F          +   IP        +     K    +  +   N R+RSA
Sbjct: 244 HSLEDRIVKRFIRQHVKGDEHLPPGIPFTNDMLKIRMKNVGKAKKASAGETKDNVRARSA 303

Query: 310 KLRAGMRTV 318
            +R   +  
Sbjct: 304 VMRVAEKVA 312


>gi|325265585|ref|ZP_08132276.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Kingella
           denitrificans ATCC 33394]
 gi|324982933|gb|EGC18554.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Kingella
           denitrificans ATCC 33394]
          Length = 323

 Score =  364 bits (934), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 114/313 (36%), Positives = 170/313 (54%), Gaps = 10/313 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69
           +     +H+ VLL + +  LN  P  + +D TFG GG+SR           +I  D+DP 
Sbjct: 1   MTTQSFEHITVLLNEAVDALNVRPSGIYVDGTFGRGGHSRLILSRLNEQGRLIVFDKDPA 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFS 126
           A++  QE +    ++ S+F   FS       + G+   DG +FDLG+SS QID   RGFS
Sbjct: 61  AIAVAQE-LARQDQRVSVFHQGFSHFDAACTELGISQIDGALFDLGISSPQIDDASRGFS 119

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           F+   PLDMRM  + G SA++ +  A+ +++  ++   GEE+ + +IA AIV +R  AP 
Sbjct: 120 FRFDAPLDMRMDTTRGESAAEWLMHADEQEIHEVIKNYGEERFSRQIARAIVAKRIEAPI 179

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            TT  L+ +  + V  S+    HPATR+FQA+RI++N E++E+AQ L      L   G L
Sbjct: 180 HTTGQLAEIAAQCV-RSREKGQHPATRTFQAIRIYINRELDEVAQVLPQVTTRLNTHGRL 238

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNR 304
            V++FHSLEDR+VK+F    S      +      A  P     I  K +    E++ +N 
Sbjct: 239 AVIAFHSLEDRIVKQFMREYSTHAPLPKWAAVREADLPKPPLRIVGKPIKAGAEELNYNP 298

Query: 305 RSRSAKLRAGMRT 317
           R+RSA LR   RT
Sbjct: 299 RARSAILRVAERT 311


>gi|125624479|ref|YP_001032962.1| S-adenosyl-methyltransferase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|263458159|sp|A2RLT4|RSMH_LACLM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263460329|sp|Q02ZY9|RSMH_LACLS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|124493287|emb|CAL98255.1| S-adenosyl-methyltransferase [Lactococcus lactis subsp. cremoris
           MG1363]
          Length = 317

 Score =  364 bits (934), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 101/307 (32%), Positives = 164/307 (53%), Gaps = 9/307 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76
            H  VLL + + +L   P  + +DAT G  G+S          ++ + D+D  A +  + 
Sbjct: 8   KHDTVLLHETVDMLEVKPNGIYVDATLGGAGHSEYLLSKLTTGHLYSFDQDETAHANAKV 67

Query: 77  TMRD--YKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            + +   +++ +L ++ F  L+  + +     +DG+++DLGVSS Q D   RGFS++K  
Sbjct: 68  RLSEQLAEDKVTLIKSNFRNLKSALAELDITKIDGILYDLGVSSPQFDDSQRGFSYKKEA 127

Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM  S  +SA +VVN    + L RI    GE+K + +IA  I + R+  P +TT +
Sbjct: 128 RLDMRMDQSQTLSAYEVVNDYPYEALVRIFFRYGEDKFSKQIARKIEQSRKIKPIETTIE 187

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ LI+  +   +   + HPA R FQA+RI VN+E+    + +  A   LK  G + V++
Sbjct: 188 LADLIKSALPQKELKKKGHPAKRIFQAIRIEVNDELGAAEESIEQAIDLLKVDGRISVIT 247

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K  F   S   +     +      A  + I +K V+ ++E++ FN R+ SA
Sbjct: 248 FHSLEDRLTKSIFKEYSTVNVPKGLPMLPKEMEAKLKLINRKPVLASEEELEFNNRAHSA 307

Query: 310 KLRAGMR 316
           KLR   +
Sbjct: 308 KLRVAQK 314


>gi|254238917|ref|ZP_04932240.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|126170848|gb|EAZ56359.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
          Length = 313

 Score =  364 bits (934), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 121/313 (38%), Positives = 181/313 (57%), Gaps = 14/313 (4%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAV 71
           +    H+ VLLE+ ++ L P      LD TFG GG+SR+  +    G  ++  D+DP A+
Sbjct: 2   NATYRHITVLLEEAVSALAPREDGCYLDGTFGRGGHSRALLEKLGAGGRLLGFDKDPQAI 61

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSF 127
             G + +     +F + Q +F++L D V  +G    VDGV+ DLGVSS Q+D  +RGFSF
Sbjct: 62  QTG-KALAAEDGRFVIVQRSFAELGDEVRARGLEGRVDGVLLDLGVSSPQLDDPERGFSF 120

Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
              GPLDMRM+   GISA++ +  A  +++ R+    GEE+ A R+A AIV+RRQ  PF+
Sbjct: 121 LNDGPLDMRMNPGQGISAAEFIANAAEEEIARVFKEYGEERFAKRMARAIVQRRQERPFE 180

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
            T DL+ +I       +  + +PATR+FQ LRI VNNE+ +L +GL +A ++L  GG L+
Sbjct: 181 RTADLAEVITVANPAWEKGK-NPATRAFQGLRIHVNNELGDLERGLDAALESLAVGGRLV 239

Query: 247 VVSFHSLEDRLVKKFFASRSG---KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
           V+SFHSLEDR+VK F    +      +     I S       + +  K    ++E++  N
Sbjct: 240 VISFHSLEDRIVKLFMRKHAKGEADNLPRDLPIRSKVFEPRLKLL-GKPQYASEEELKAN 298

Query: 304 RRSRSAKLRAGMR 316
            RSRSA +R   +
Sbjct: 299 PRSRSAVMRVAEK 311


>gi|109899828|ref|YP_663083.1| S-adenosyl-methyltransferase MraW [Pseudoalteromonas atlantica T6c]
 gi|123170716|sp|Q15Q09|RSMH_PSEA6 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|109702109|gb|ABG42029.1| S-adenosyl-methyltransferase MraW [Pseudoalteromonas atlantica T6c]
          Length = 311

 Score =  364 bits (934), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 122/311 (39%), Positives = 181/311 (58%), Gaps = 13/311 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
           T   H+ VLL++ I  L   P  V LDATFG GG+++           +IALDRDP A+ 
Sbjct: 3   TQPSHLSVLLQESIDGLAIKPDGVYLDATFGRGGHTKQILSQLSPNGRLIALDRDPSAIE 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             +    D   +FS+    FS+++D +        VDG++ DLGVSS Q+D  +RGFSF 
Sbjct: 63  AAKALADDA--RFSIHHCNFSEMEDVLTSLELHGKVDGILMDLGVSSPQLDEPERGFSFM 120

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           + GPLDMRM+ + G SA+  +  A  +D+ +++   GEEK   RIAH IV  RQ AP  T
Sbjct: 121 REGPLDMRMNPTKGQSAAQWLAHAEEQDIAQVIKEFGEEKFGKRIAHGIVNARQEAPITT 180

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T  L+ +I   V   K+   HPATRSFQ +RI++N+E++E+  GL++A  +L +GG L V
Sbjct: 181 TAQLAEIIDLAVPV-KDKFKHPATRSFQGIRIYINSELDEIRTGLKAALNSLNSGGRLSV 239

Query: 248 VSFHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           +SFHSLEDRLVK+F   +S   +V     ++ +            K + P+ ++++ N R
Sbjct: 240 ISFHSLEDRLVKRFIREQSRGLQVPHGLPIMQAEIDSHKAMKAIGKAIKPSSDELSRNVR 299

Query: 306 SRSAKLRAGMR 316
           +RS+ LR   +
Sbjct: 300 ARSSVLRVAEK 310


>gi|319639028|ref|ZP_07993786.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Neisseria
           mucosa C102]
 gi|317399932|gb|EFV80595.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Neisseria
           mucosa C102]
          Length = 320

 Score =  364 bits (934), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 112/317 (35%), Positives = 173/317 (54%), Gaps = 15/317 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           MS   ++    HV VLL + +  L      + +D TFG GG+SR           ++  D
Sbjct: 1   MSKVENYQ---HVTVLLHEAVDALAIREDGIYVDGTFGRGGHSRLILSRLGEQGRLVVFD 57

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGD 122
           +DP A++   E +    ++ S+    F   Q  + + G+D   G +FDLG+SS QID G 
Sbjct: 58  KDPEAIAVANE-LAAQDKRVSVVHNGFETFQTALDELGIDKIDGALFDLGISSPQIDDGS 116

Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF+   PLDMRM  + G+SA++ +  A+ +DL  ++   GEE+ + +IA AIV +R+
Sbjct: 117 RGFSFRFDAPLDMRMDPTRGMSAAEWIATASEQDLHEVIKNYGEERFSRQIARAIVAQRE 176

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            +P  TT+ L+ L+ + V   +  +  PATR+FQA+RIF+N E+EE+   L      LK 
Sbjct: 177 ESPIDTTRKLAQLVAQNVRTRERGQ-DPATRTFQAVRIFINRELEEVEAVLPQVAGRLKE 235

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQED 299
           GG L V++FHSLEDR+VK+F    S      R  +   ++      +++  K + P   +
Sbjct: 236 GGRLAVIAFHSLEDRIVKQFIKKYSQHAPLPRWAVVKEADLPQPPLKAV-GKAIKPGSAE 294

Query: 300 VAFNRRSRSAKLRAGMR 316
              N R+RSA LR   R
Sbjct: 295 TEANPRARSAVLRVAER 311


>gi|55981045|ref|YP_144342.1| S-adenosyl-methyltransferase MraW [Thermus thermophilus HB8]
 gi|68565453|sp|Q5SJD8|RSMH_THET8 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|56966831|pdb|1WG8|A Chain A, Crystal Structure Of A Predicted S-Adenosylmethionine-
           Dependent Methyltransferase Tt1512 From Thermus
           Thermophilus Hb8.
 gi|56966832|pdb|1WG8|B Chain B, Crystal Structure Of A Predicted S-Adenosylmethionine-
           Dependent Methyltransferase Tt1512 From Thermus
           Thermophilus Hb8.
 gi|55772458|dbj|BAD70899.1| conserved hypothetical protein [Thermus thermophilus HB8]
          Length = 285

 Score =  364 bits (934), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 126/300 (42%), Positives = 181/300 (60%), Gaps = 26/300 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           HVPVL ++ + LL   PG V +DAT G  G++R   + G  VI LD+DP AV+  +    
Sbjct: 6   HVPVLYQEALDLLAVRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKGL-- 63

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
            +    ++ Q  F  L+ ++   GV   DG++ DLGVSS  +D   RGFS+QK GPLDMR
Sbjct: 64  -HLPGLTVVQGNFRHLKRHLAALGVERVDGILADLGVSSFHLDDPSRGFSYQKEGPLDMR 122

Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
           M   G +A +VVN+  ++ L R+L  LGEE QA RIA AIV  R+ AP +TT  L+ +++
Sbjct: 123 MGLEGPTAKEVVNRLPLEALARLLRELGEEPQAYRIARAIVAAREKAPIETTTQLAEIVR 182

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
           K V F +    HPA ++FQALRI+VN+E+  L + L  A + L  GG L+V++FHSLEDR
Sbjct: 183 KAVGFRRAG--HPARKTFQALRIYVNDELNALKEFLEQAAEVLAPGGRLVVIAFHSLEDR 240

Query: 257 LVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           +VK+F                     +  + +TKK +VP++++ A N R+RSAKLRA  +
Sbjct: 241 VVKRFLRE------------------SGLKVLTKKPLVPSEKEAAQNPRARSAKLRAAEK 282


>gi|256830379|ref|YP_003159107.1| S-adenosyl-methyltransferase MraW [Desulfomicrobium baculatum DSM
           4028]
 gi|256579555|gb|ACU90691.1| S-adenosyl-methyltransferase MraW [Desulfomicrobium baculatum DSM
           4028]
          Length = 320

 Score =  364 bits (934), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 118/314 (37%), Positives = 177/314 (56%), Gaps = 11/314 (3%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAV 71
               DH+PV+LE+V+  + P PG   +DAT G GG++    ++    + ++ LDRD  A+
Sbjct: 2   DAYSDHIPVMLEEVMHWIAPRPGGFYMDATLGLGGHAARLMELTNGQARLLGLDRDEQAL 61

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQ 128
           +   E +  Y E   L   +F      + + G   +DGV+ DLGVSS+Q+D  +RGFSF 
Sbjct: 62  AKAGERLAQYGENVQLAHTSFQHFSRALREVGWDKLDGVIADLGVSSLQLDSPERGFSFL 121

Query: 129 KSGPLDMRMSCS--GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           + GPLDMRM     G  AS +VN A+ + L ++L   GEE  A RIA AIVK R++A   
Sbjct: 122 QDGPLDMRMDPGSGGEPASVIVNGASFERLRQLLWDYGEEPMAGRIAGAIVKIRETARID 181

Query: 187 TTQDLSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           +T +L+ ++       +   +R HPAT++FQALR+ VN E+ E+   L      L+ G  
Sbjct: 182 STLELARIVAAAYPAKRRALSRNHPATKTFQALRLEVNQELREVEFFLERIVDHLRPGAR 241

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
           + V+SFHSLEDR+VK+ F   S   +  R   +    H    +   +K ++PT++++  N
Sbjct: 242 ICVISFHSLEDRIVKRAFRKESSACLCPREYPVCQCGHTQKLRLPFRKPLIPTEDEMRAN 301

Query: 304 RRSRSAKLRAGMRT 317
            RSRSAKLR   R 
Sbjct: 302 SRSRSAKLRVAERV 315


>gi|227113994|ref|ZP_03827650.1| S-adenosyl-methyltransferase MraW [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 314

 Score =  364 bits (934), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 118/311 (37%), Positives = 179/311 (57%), Gaps = 18/311 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H  VLL++ +  LN   G + +D TFG GG+SR           ++A+DRDP A+   +
Sbjct: 6   KHTTVLLDEAVNGLNIRSGGIYIDGTFGRGGHSRLILSQLGPEGRLLAIDRDPQAIEAAK 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +FS+    FS + +YV + G    +DGV+ DLGVSS Q+D  +RGFSF + G
Sbjct: 66  ---AIDDPRFSIIHGPFSAMAEYVAELGLTGQIDGVLLDLGVSSPQLDDPERGFSFMRDG 122

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + G+SA++ + +A   D+  +L   GEE+ A RIA AIV+R +  P   T++
Sbjct: 123 PLDMRMDPTRGLSAAEWLMKAEADDIVWVLKTFGEERFAKRIARAIVERNRLDPMTRTKE 182

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ LI       + ++ HPATRSFQA+RI++N+E+EE+ + L  A   L   G L V+SF
Sbjct: 183 LAELIAAASPIREKHK-HPATRSFQAIRIYINSELEEIERALEGALSVLAPQGRLSVISF 241

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNRR 305
           HSLEDR+VK+F   +S        +  +            +++ KK ++P++ +VA N R
Sbjct: 242 HSLEDRIVKRFIRHQSRGPQVPAGLPLTEEQLRSQGGQTLKAVGKK-LMPSEAEVAENPR 300

Query: 306 SRSAKLRAGMR 316
           +RS+ LR   R
Sbjct: 301 ARSSVLRFAER 311


>gi|221638505|ref|YP_002524767.1| S-adenosyl-methyltransferase MraW [Rhodobacter sphaeroides KD131]
 gi|262825605|sp|B9KNI8|RSMH_RHOSK RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|221159286|gb|ACM00266.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Rhodobacter sphaeroides KD131]
          Length = 331

 Score =  364 bits (934), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 144/331 (43%), Positives = 200/331 (60%), Gaps = 5/331 (1%)

Query: 11  SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPF 69
           +        H+PVLL  ++A + P      LD TFGAGGY+R   + G+  VI +DRDP 
Sbjct: 2   AEADTERRPHIPVLLRPLLAAVAPVE-GTWLDGTFGAGGYARGLLEAGADRVIGVDRDPL 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
           A+        DY ++  L   TFSQL  +     +DGVV DLGVSSMQ+D  +RGFSFQK
Sbjct: 61  ALEMASGWAGDYGDRLRLVAGTFSQLDSHAGAP-LDGVVLDLGVSSMQLDLAERGFSFQK 119

Query: 130 SGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            GPLDMRMS  G SA+D+VN A+ + L  IL   GEE+ + RIA AIV+ R +AP   T 
Sbjct: 120 DGPLDMRMSQEGESAADLVNTASEETLADILYHYGEERASRRIARAIVEARAAAPITRTL 179

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            L+ ++ + +   K  ++HPATRSFQA+RI VN E  EL +GL +AE+AL+ GG L VV+
Sbjct: 180 ALAEIVARCLPRPKPGQMHPATRSFQAIRIAVNAEFSELVEGLEAAERALRPGGRLAVVT 239

Query: 250 FHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK+F   RS G+    R+   + A    F    ++ + P + ++A N R+RS
Sbjct: 240 FHSLEDRIVKRFLQLRSGGEGQGNRYAPETRADAPRFTLPLRRAISPDEAELAENPRARS 299

Query: 309 AKLRAGMRTVERSIE-DDSFVHLPRLPTLSQ 338
           A+LR G+RT   + + D   +  P +P   +
Sbjct: 300 ARLRVGVRTDAPAGKVDPQALGTPLIPKKGR 330


>gi|46445945|ref|YP_007310.1| S-adenosyl-methyltransferase [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|51316230|sp|Q6MEG4|RSMH_PARUW RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|46399586|emb|CAF23035.1| probable S-adenosyl-methyltransferase [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 316

 Score =  364 bits (934), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 113/307 (36%), Positives = 170/307 (55%), Gaps = 9/307 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCGQ 75
            H  VLLE+VI    P   KV +D T GAGG++ +  +    +   + +D+DP A++   
Sbjct: 7   PHRSVLLEEVIEAFQPVQLKVFIDGTLGAGGHAEAILEHHPEIELYLGIDQDPNALNIAN 66

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + +  +K++  L Q  FSQ   ++ + G    DG++ DLGVSSMQ+D  +RGFSF K GP
Sbjct: 67  KRLEKWKQKILLKQGNFSQFDIFLKEIGFSSMDGLLVDLGVSSMQLDQPERGFSFSKDGP 126

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+  G ++A+D+VN  +  DL +I    GEEK+    A  IV+ RQ     TT DL
Sbjct: 127 LDMRMNPEGKLTAADIVNTWSEHDLGKIFRDYGEEKKWRLAARTIVQARQVKQILTTTDL 186

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           ++L++    ++    I+P T  FQALRI VN E++ L Q +      LK GG + V+SFH
Sbjct: 187 ANLLKPAFAWNPKKGINPLTLIFQALRICVNRELDVLEQLVSKTFDYLKPGGRVAVISFH 246

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK      +        +          V + + +K + P ++++  N RSRSA
Sbjct: 247 SLEDRIVKNELRLAASDKWETTGLGSGLFRDKKPVAKLVNRKPICPHEKEIKENPRSRSA 306

Query: 310 KLRAGMR 316
           K R   +
Sbjct: 307 KFRIAEK 313


>gi|126461541|ref|YP_001042655.1| S-adenosyl-methyltransferase MraW [Rhodobacter sphaeroides ATCC
           17029]
 gi|262825567|sp|A3PHR7|RSMH_RHOS1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|126103205|gb|ABN75883.1| S-adenosyl-methyltransferase MraW [Rhodobacter sphaeroides ATCC
           17029]
          Length = 331

 Score =  364 bits (934), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 144/331 (43%), Positives = 201/331 (60%), Gaps = 5/331 (1%)

Query: 11  SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPF 69
           +        H+PVLL  ++A + P      LD TFGAGGY+R   + G+  VI +DRDP 
Sbjct: 2   AEADTERRPHIPVLLRPLLAAVAPVE-GTWLDGTFGAGGYARGLLEAGADRVIGVDRDPL 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
           A+        DY ++  L   TFSQL  +     +DGVV DLGVSSMQ+D  +RGFSFQK
Sbjct: 61  ALKMASGWAGDYGDRLRLVAGTFSQLDSHAGAP-LDGVVLDLGVSSMQLDLAERGFSFQK 119

Query: 130 SGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            GPLDMRMS  G SA+D+VN A+ + L  IL   GEE+ + RIA AIV+ R +AP   T 
Sbjct: 120 DGPLDMRMSQEGESAADLVNTASEESLADILYHYGEERASRRIARAIVEARAAAPITRTL 179

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            L+ ++ + +   K  ++HPATRSFQA+RI VN E  EL +GL +AE+AL+ GG L VV+
Sbjct: 180 ALAEIVARCLPRPKPGQMHPATRSFQAIRIAVNAEFSELVEGLEAAERALRPGGRLAVVT 239

Query: 250 FHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK+F   RS G+    R+   + A+   F    ++ + P + ++A N R+RS
Sbjct: 240 FHSLEDRIVKRFLQLRSGGEGQGNRYAPETRAYAPRFTLPLRRAISPDEAELAENPRARS 299

Query: 309 AKLRAGMRTVERSIE-DDSFVHLPRLPTLSQ 338
           A+LR G+RT   + + D   +  P +P   +
Sbjct: 300 ARLRVGVRTDAPAGKVDPQALGTPLIPKKGR 330


>gi|68171490|ref|ZP_00544874.1| methyltransferase [Ehrlichia chaffeensis str. Sapulpa]
 gi|67999096|gb|EAM85763.1| methyltransferase [Ehrlichia chaffeensis str. Sapulpa]
          Length = 297

 Score =  364 bits (934), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 133/305 (43%), Positives = 189/305 (61%), Gaps = 14/305 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQET 77
            H PVLL +++ +LNP  GKV +DATFGAGGY+R+  K     V A+D+D       ++ 
Sbjct: 1   MHTPVLLNEMLDILNPQDGKVYVDATFGAGGYTRAILKSANCQVYAIDQDECTNVFYEKL 60

Query: 78  MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           + D+  +     + FS+++  +     K VDG+VFD+GVSSMQ++   RGFSF K GPLD
Sbjct: 61  VNDFPGKVHFCVSKFSKIKQILHGAQLKKVDGIVFDIGVSSMQLEDASRGFSFSKDGPLD 120

Query: 135 MRMSCS--GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           MRMS S   + AS  VN A  +++  ++   G EK + +IA AI + R+  P +TT +L+
Sbjct: 121 MRMSTSTSNVDASVFVNTAFEEEIANVIYQYGGEKYSRKIAKAIAESRKKKPIKTTGELA 180

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           S+++  +  SKN+ I PATR+FQA+RI+VN E+EEL QG+  +   L  GG +IVVSFHS
Sbjct: 181 SIVRSVISRSKNHSIDPATRTFQAIRIWVNKELEELEQGIIDSADLLNPGGKIIVVSFHS 240

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK  F S       +         P  FQ I KKV+ P+ E++  N RSRSAKLR
Sbjct: 241 LEDRIVKVMFKSLCSGSSVIS--------PIGFQLINKKVIRPSFEEILNNPRSRSAKLR 292

Query: 313 AGMRT 317
           A ++ 
Sbjct: 293 AILKI 297


>gi|197105793|ref|YP_002131170.1| S-adenosyl-methyltransferase [Phenylobacterium zucineum HLK1]
 gi|262824815|sp|B4RFS8|RSMH_PHEZH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|196479213|gb|ACG78741.1| S-adenosyl-methyltransferase [Phenylobacterium zucineum HLK1]
          Length = 310

 Score =  364 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 140/310 (45%), Positives = 195/310 (62%), Gaps = 5/310 (1%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETM 78
            HVPVL+++V+  L PAPG+ I+D TFGAGGY+R+    G++V+A DRDP      +   
Sbjct: 4   PHVPVLMQEVVDALAPAPGRTIIDGTFGAGGYTRAILATGASVVAFDRDPTVRRFAEGL- 62

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138
               ++F L +A FS++ + + +   DGV  DLGVSSMQ+D  +RGFSF + GPLDMRM 
Sbjct: 63  --PADRFRLVEARFSEMDEVLGEGAADGVALDLGVSSMQLDQAERGFSFMQDGPLDMRMG 120

Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198
            SG +A+D+VN A   +L RI  + GEE+++ RIA AI +RR+  PF  T +L+  I+K 
Sbjct: 121 ASGPTAADLVNTAEPAELARIFFVYGEERESRRIARAIARRREEQPFTRTLELADFIEKA 180

Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258
           +   +  +IHPATR+FQ LRI VN E+ EL  GL +AE+ LK  G L VV+FHSLEDR+V
Sbjct: 181 LGGRRGAKIHPATRAFQGLRIAVNEELSELEAGLAAAERVLKPEGRLCVVTFHSLEDRIV 240

Query: 259 KKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           K F + R+G+  A     P         FQ +      P++ +VA N R+RSAKLRA +R
Sbjct: 241 KSFLSVRAGRTPAGSRHAPPVRQGPAPSFQLLFNGARGPSETEVAANPRARSAKLRAAVR 300

Query: 317 TVERSIEDDS 326
           T      D +
Sbjct: 301 TDAPVWRDAA 310


>gi|253988586|ref|YP_003039942.1| S-adenosyl-methyltransferase MraW [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253780036|emb|CAQ83197.1| s-adenosyl-l-methionine-dependent methyltransferase [Photorhabdus
           asymbiotica]
          Length = 314

 Score =  364 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 123/320 (38%), Positives = 176/320 (55%), Gaps = 19/320 (5%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPF 69
           + ++   H  VLL++ +  LN     + +D TFG GG+SR           +IA+DRDP 
Sbjct: 1   MANSHFKHTSVLLDEAVNGLNIRKDGIYIDGTFGRGGHSRLILSQLGMEGRLIAIDRDPQ 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGF 125
           A+   +        +FS+    FS+L  YV + G    +DGV+ DLGVSS Q+D  +RGF
Sbjct: 61  AIETAKSI---TDPRFSIIHGPFSELAHYVENAGLTGKIDGVLLDLGVSSPQLDDPERGF 117

Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF + GPLDMRM  + G SA++ + +A   D+  +L   GEE+ A RIA AIV R Q  P
Sbjct: 118 SFMRDGPLDMRMDPTHGQSAAEWLMKAEADDIAWVLKTFGEERFAKRIAKAIVTRNQEEP 177

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
              T+ L+ LI +     K    HPATRSFQA+RI++N+E+EE+ Q L  A + L   G 
Sbjct: 178 ITRTKVLADLIAQASPV-KEKYKHPATRSFQAIRIYINSELEEIEQALDGALQVLAPRGR 236

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQED 299
           L V+SFHSLEDR+VK+F    S        +  +            +SI K  + P++ +
Sbjct: 237 LSVISFHSLEDRIVKRFIRHNSRGPQVPAGLPLTEEQLKAQGGRSLKSIGK--MKPSENE 294

Query: 300 VAFNRRSRSAKLRAGMRTVE 319
           VA N R+RS+ LR   +  E
Sbjct: 295 VADNPRARSSVLRFAEKVSE 314


>gi|326795778|ref|YP_004313598.1| ribosomal RNA small subunit methyltransferase H [Marinomonas
           mediterranea MMB-1]
 gi|326546542|gb|ADZ91762.1| Ribosomal RNA small subunit methyltransferase H [Marinomonas
           mediterranea MMB-1]
          Length = 312

 Score =  364 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 117/318 (36%), Positives = 187/318 (58%), Gaps = 13/318 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDR 66
           M+S+ H    +H+ V+L++ + +L        +D TFG GG++R          ++  D+
Sbjct: 1   MTSSEH----EHISVMLDESVEMLVTNESGQYVDGTFGRGGHTRLVLSKLRDGKLLGFDK 56

Query: 67  DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGD 122
           DP A+  G++ +     +F + Q +F+ + D++P     + +DG++ DLGVSS Q+D  +
Sbjct: 57  DPVAIEFGRK-LEAEDSRFEIVQDSFANMLDHIPAVFGTEKIDGIMMDLGVSSPQLDDAE 115

Query: 123 RGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF   GPLDMRM+   G+SA++ +  A  K++  ++   GEE+ + RIA AI ++R 
Sbjct: 116 RGFSFMNDGPLDMRMNPDQGMSAAEWIAVAAEKEIADVMYQYGEERFSRRIAKAICEKRL 175

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            AP  TT  LS ++ +     +  + +PATR+FQ +RI++NNE+ +L +GL  A  +LK 
Sbjct: 176 EAPITTTAQLSKIVAEANPAWEKGK-NPATRAFQGIRIYINNELGDLEKGLEVAADSLKV 234

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           GG L+V+SFHSLEDR+VK+F    S      RH+   NAH  +      K   P++++V 
Sbjct: 235 GGRLVVISFHSLEDRIVKRFMKKMSKGPDLPRHLPIQNAHLDIKFKTVGKATKPSKDEVT 294

Query: 302 FNRRSRSAKLRAGMRTVE 319
            N RSRSA LR   RT +
Sbjct: 295 SNVRSRSAVLRVLERTRD 312


>gi|50122745|ref|YP_051912.1| S-adenosyl-methyltransferase MraW [Pectobacterium atrosepticum
           SCRI1043]
 gi|54036180|sp|Q6D0H5|RSMH_ERWCT RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|49613271|emb|CAG76722.1| S-adenosyl-methyltransferase [Pectobacterium atrosepticum SCRI1043]
          Length = 314

 Score =  364 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 120/311 (38%), Positives = 179/311 (57%), Gaps = 18/311 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H  VLL++ +  LN   G + +D TFG GG+SR           ++A+DRDP A+   +
Sbjct: 6   KHTTVLLDEAVNGLNIRSGGIYIDGTFGRGGHSRLILSQLGPEGRLLAIDRDPQAIEAAK 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +FS+    FS + DYV + G    +DGV+ DLGVSS Q+D  +RGFSF + G
Sbjct: 66  ---AIDDSRFSIIHGPFSAMADYVAELGLTGQIDGVLLDLGVSSPQLDDPERGFSFMRDG 122

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + G SA++ + +A   D+  +L   GEE+ A RIA AIV+R ++ P   T++
Sbjct: 123 PLDMRMDPTRGSSAAEWLMKAEADDIVWVLKTFGEERFAKRIARAIVERNRTEPMTRTKE 182

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+SLI       + ++ HPATRSFQA+RI++N+E+EE+ + L  A   L   G L V+SF
Sbjct: 183 LASLIAAASPIREKHK-HPATRSFQAIRIYINSELEEIERALEGALSVLAPQGRLSVISF 241

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNRR 305
           HSLEDR+VK+F   +S        +  +            + + KK ++P++ +VA N R
Sbjct: 242 HSLEDRIVKRFIRHQSRGPQVPAGLPLTEEQLRSQGGQTLKPVGKK-LMPSEAEVAENPR 300

Query: 306 SRSAKLRAGMR 316
           +RS+ LR   R
Sbjct: 301 ARSSVLRFAER 311


>gi|110680542|ref|YP_683549.1| S-adenosyl-methyltransferase, putative [Roseobacter denitrificans
           OCh 114]
 gi|123172199|sp|Q163I0|RSMH_ROSDO RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|109456658|gb|ABG32863.1| S-adenosyl-methyltransferase, putative [Roseobacter denitrificans
           OCh 114]
          Length = 330

 Score =  363 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 144/325 (44%), Positives = 194/325 (59%), Gaps = 6/325 (1%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDP 68
           ++A   T   H+PVLL  ++  + P    V LD TFGAGGY+R   + G+  VIA+DRDP
Sbjct: 3   AAATADTTSPHIPVLLPAILDAVAPVQ-GVWLDGTFGAGGYTRGLLEAGADRVIAVDRDP 61

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
            A     +    Y  +       FS++  Y     +DGVV DLGVSSMQ+D  +RGFSF 
Sbjct: 62  LAFEMAADWAGSYGTRLVQQPGVFSEMDTYA--VALDGVVLDLGVSSMQLDLAERGFSFM 119

Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           + GPLDMRMS  G SA+D+VN+A+ + L  IL   GEE+ + RIA AI+  R  AP  TT
Sbjct: 120 RDGPLDMRMSQEGPSAADIVNEASAETLANILFQYGEERASRRIAKAILTERALAPITTT 179

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ +I++ +  +K  + HPATRSFQALRI VN+E  EL QGL +AE+ALK GG L VV
Sbjct: 180 LHLAGIIERCLPRAKPGQSHPATRSFQALRIAVNDEYGELYQGLMAAERALKPGGQLAVV 239

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPS-NAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHS+EDR+VK+F  +R+G         P        F   ++K +V    +VA N R+R
Sbjct: 240 TFHSVEDRMVKRFLTARAGAGGNANRFAPEVQRDAPAFTLRSRKAIVADDAEVAANPRAR 299

Query: 308 SAKLRAGMRTVERSIE-DDSFVHLP 331
           SAKLR  +RT   +   D   V +P
Sbjct: 300 SAKLRIAVRTQAPAGVIDAKSVGMP 324


>gi|261867472|ref|YP_003255394.1| S-adenosyl-methyltransferase MraW [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261412804|gb|ACX82175.1| S-adenosyl-methyltransferase MraW [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 322

 Score =  363 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 123/325 (37%), Positives = 177/325 (54%), Gaps = 20/325 (6%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M+     +  +H+ VLL + +  L      + +D TFG GG+SR           +IA+D
Sbjct: 1   MTHLNTFSSTEHLTVLLHETVDGLALKENGIYIDGTFGRGGHSRLILSQLSVNGKLIAID 60

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCG 121
           RDP AV+  Q+       +F +   TFS++       G    VDG++ DLGVSS Q+D  
Sbjct: 61  RDPQAVAEAQKI---QDSRFHIEHNTFSEILPICEKFGLVGKVDGILLDLGVSSPQLDDA 117

Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF K GPLDMRM  S GISA++ + Q + +DL  +L   GEE+ A RIA  IV   
Sbjct: 118 ERGFSFMKDGPLDMRMDSSKGISAAEWLAQVSEQDLAWVLKTFGEERFAKRIAKVIVDYN 177

Query: 181 QSAP------FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234
           +SA          T  L+ LI + V F K+   HPATRSFQA+RI++N E++EL   L+S
Sbjct: 178 KSAVQNGGEFLARTLQLAELITQAVPF-KDKYKHPATRSFQAIRIYINAELDELENVLQS 236

Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ--SITKKV 292
           A   L   G L V+SFHSLEDR+VK+F   +S   +  + +          +   +  K 
Sbjct: 237 ALSVLAPKGRLSVISFHSLEDRMVKQFMRKQSQGEVIPKGLPLREDQIQRNRRLKVIGKA 296

Query: 293 VVPTQEDVAFNRRSRSAKLRAGMRT 317
           ++P++ ++  N R+RSA LR   R 
Sbjct: 297 IMPSEAEIVQNPRARSAVLRIAERI 321


>gi|53711604|ref|YP_097596.1| S-adenosyl-methyltransferase MraW [Bacteroides fragilis YCH46]
 gi|253564345|ref|ZP_04841802.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 3_2_5]
 gi|115311579|sp|Q64ZL4|RSMH_BACFR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|52214469|dbj|BAD47062.1| S-adenosyl-methyltransferase MraW [Bacteroides fragilis YCH46]
 gi|251948121|gb|EES88403.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 3_2_5]
 gi|301161374|emb|CBW20914.1| putative S-adenosyl-methyltransferase [Bacteroides fragilis 638R]
          Length = 304

 Score =  363 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 108/310 (34%), Positives = 165/310 (53%), Gaps = 16/310 (5%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFA 70
                 HVPVLL++ +  +N +P    +D TFG GG+SR        G  ++  D+D  A
Sbjct: 3   EEETTYHVPVLLKESVDAMNISPDGTYVDVTFGGGGHSREILSRLGDGGRLLGFDQDEDA 62

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSF 127
                E        F+  ++ F  L +++       VD ++ DLGVSS   D  +RGFSF
Sbjct: 63  -----ERNIVNDPHFTFVRSNFRYLHNFLRYHDIGEVDAILADLGVSSHHFDDSERGFSF 117

Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           +  G LDMRM+  +GI+A+DVVN    + L  I  + GE K + ++A  IVK R     +
Sbjct: 118 RFDGKLDMRMNKRAGITAADVVNTYEEERLADIFYLYGELKNSRKLASVIVKARTGQKIE 177

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T  +   +I+    F +        + FQALRI VN E+E L + L +A +ALK GG L+
Sbjct: 178 TIGEFLEIIKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLMAATEALKPGGRLV 235

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+++HSLEDR+VK    + + +  A +    +   P  F+ +  KV+VP ++++  N RS
Sbjct: 236 VITYHSLEDRMVKNIMKTGNVEGKATQDFFGNLQTP--FRLVNNKVIVPDEDEITRNPRS 293

Query: 307 RSAKLRAGMR 316
           RSAKLR   +
Sbjct: 294 RSAKLRIAEK 303


>gi|261211507|ref|ZP_05925795.1| S-adenosyl-methyltransferase MraW [Vibrio sp. RC341]
 gi|262404723|ref|ZP_06081278.1| S-adenosyl-methyltransferase MraW [Vibrio sp. RC586]
 gi|260839462|gb|EEX66088.1| S-adenosyl-methyltransferase MraW [Vibrio sp. RC341]
 gi|262349755|gb|EEY98893.1| S-adenosyl-methyltransferase MraW [Vibrio sp. RC586]
          Length = 316

 Score =  363 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 120/323 (37%), Positives = 175/323 (54%), Gaps = 23/323 (7%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           M+++       H+ VLL + I  L   P  + +D TFG GG+SR+          + ++D
Sbjct: 1   MTASFQ-----HISVLLNESIEGLAIKPDGIYIDGTFGRGGHSRTILAQLGPQGRLYSID 55

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCG 121
           RDP A++  Q+       +F++    FS + +Y         VDGV+FDLGVSS Q+D  
Sbjct: 56  RDPQAIAEAQKI---DDPRFTIVHGPFSGIAEYAQRYDLVGKVDGVLFDLGVSSPQLDDA 112

Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF K GPLDMRM   SG+  S+ + QA++ D+T ++   GE+K A RIA AIV+ R
Sbjct: 113 ERGFSFMKDGPLDMRMDPTSGMPVSEWLAQADLDDITWVIREFGEDKHARRIAKAIVEYR 172

Query: 181 QSA---PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
           ++    P   T  L+ LI      S   + HPATR+FQA RI++N+E+EE+   LR A  
Sbjct: 173 ENELNEPLTRTSQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALRGASD 232

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSIT-KKVV 293
            L   G L V+SFHSLEDR+VK+F    S        +  +          +  T  K +
Sbjct: 233 ILAPQGRLSVISFHSLEDRMVKRFMRKESQGPQVPHGIPLTQDQIRALGSAKMKTVGKAL 292

Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316
            P+ ++V  N RSRS+ LR   +
Sbjct: 293 KPSDQEVELNPRSRSSVLRVAEK 315


>gi|224826070|ref|ZP_03699173.1| S-adenosyl-methyltransferase MraW [Lutiella nitroferrum 2002]
 gi|224601707|gb|EEG07887.1| S-adenosyl-methyltransferase MraW [Lutiella nitroferrum 2002]
          Length = 320

 Score =  363 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 121/320 (37%), Positives = 174/320 (54%), Gaps = 10/320 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPF 69
           +   +  H+ VLL + +A L   P  V +D TFG GG+SR           ++A D+DP 
Sbjct: 1   MSAPVFSHLTVLLSEAVAALAVRPDGVYVDCTFGRGGHSRLILSQLGPAGRLVAFDKDPE 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFS 126
           A+    E +     +F+L    F  L   +   G   VDGV+ DLGVSS QID   RGFS
Sbjct: 61  AI-AAGERLAAEDPRFTLVHEGFETLARELDRLGIARVDGVLMDLGVSSPQIDDARRGFS 119

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           F+   PLDMRM  S G++A++ +  A  +D+  ++   GEE+ A +IA AIV +R+ AP 
Sbjct: 120 FRFDAPLDMRMDTSRGLTAAEWLATAAEEDIREVIKTYGEERFARKIAAAIVAQRELAPL 179

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           +TT+ L+ L+ + V   +  +  PATR+FQA+RI++N E+EEL   L  A + L  GG L
Sbjct: 180 ETTRQLAQLVGQNVRTREPGQ-DPATRTFQAIRIYINRELEELKAVLPQAAQRLAEGGRL 238

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT-KKVVVPTQEDVAFNR 304
            V+SFHSLEDR+VK F    S        ++  +A        T  K V  + ++V  N 
Sbjct: 239 AVISFHSLEDRIVKNFMRDASSDAKLPSWVMVRSADLPEPPLRTVGKPVRASDDEVNGNP 298

Query: 305 RSRSAKLRAGMRTVERSIED 324
           RSRSA +R   RT     E+
Sbjct: 299 RSRSAIMRIAERTAGAWREE 318


>gi|88657585|ref|YP_507355.1| S-adenosyl-methyltransferase MraW [Ehrlichia chaffeensis str.
           Arkansas]
 gi|123493393|sp|Q2GGS8|RSMH_EHRCR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|88599042|gb|ABD44511.1| S-adenosyl-methyltransferase MraW [Ehrlichia chaffeensis str.
           Arkansas]
          Length = 297

 Score =  363 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 133/305 (43%), Positives = 189/305 (61%), Gaps = 14/305 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQET 77
            H PVLL +++ +LNP  GKV +DATFGAGGY+R+  K     V A+D+D       ++ 
Sbjct: 1   MHTPVLLNEMLDILNPQDGKVYVDATFGAGGYTRAILKSANCQVYAIDQDECTNVFYEKL 60

Query: 78  MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           + D+  +     + FS+++  +     K VDG+VFD+GVSSMQ++   RGFSF K GPLD
Sbjct: 61  VNDFPGKVHFCVSKFSKIKQILHGAQLKKVDGIVFDIGVSSMQLEDASRGFSFSKDGPLD 120

Query: 135 MRMSCS--GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           MRMS S   + AS  VN A  +++  ++   G EK + +IA AI + R+  P +TT +L+
Sbjct: 121 MRMSTSISNVDASVFVNTAFEEEIANVIYQYGGEKYSRKIAKAIAESRKKKPIKTTGELA 180

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           S+++  +  SKN+ I PATR+FQA+RI+VN E+EEL QG+  +   L  GG +IVVSFHS
Sbjct: 181 SIVRSVISRSKNHSIDPATRTFQAIRIWVNKELEELEQGIIDSADLLNPGGKIIVVSFHS 240

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK  F S       +         P  FQ I KKV+ P+ E++  N RSRSAKLR
Sbjct: 241 LEDRIVKVMFKSLCSGSSVIS--------PIGFQLINKKVIRPSFEEILNNPRSRSAKLR 292

Query: 313 AGMRT 317
           A ++ 
Sbjct: 293 AILKI 297


>gi|160891413|ref|ZP_02072416.1| hypothetical protein BACUNI_03863 [Bacteroides uniformis ATCC 8492]
 gi|156858820|gb|EDO52251.1| hypothetical protein BACUNI_03863 [Bacteroides uniformis ATCC 8492]
          Length = 307

 Score =  363 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 107/312 (34%), Positives = 165/312 (52%), Gaps = 16/312 (5%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69
           +      H+PVLL   +  +N  P    +D TFG GG+SR        G  +++ D+D  
Sbjct: 2   MKEETTYHIPVLLMPSVDAMNIRPDGTYVDVTFGGGGHSREILSRLEDGGRLLSFDQDED 61

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFS 126
           A     E        F+  ++ F  L +++   G   VD ++ DLGVSS   D  +RGFS
Sbjct: 62  A-----ERNIVNNPHFTFVRSNFRYLHNFLRYHGIEKVDAILADLGVSSHHFDDSERGFS 116

Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           F+  G LDMRM+  +G++A+D+VN    + L  I  + GE K + ++A  IVK R +   
Sbjct: 117 FRFDGALDMRMNKRAGLTAADIVNTYEEEKLADIFYLYGELKNSRKLASVIVKARATQRI 176

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            T  +   +++    F +        + FQALRI VN E+E L + L +A +ALK GG L
Sbjct: 177 ATIGEFLEIVKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLYAATEALKPGGRL 234

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           +V+++HSLEDR+VK    + + +  A +    +   P  F+ +  KV+VP +E++  N R
Sbjct: 235 VVITYHSLEDRMVKNIMKTGNVEGKAEKDFFGNVLTP--FRLVNNKVIVPDEEEIERNPR 292

Query: 306 SRSAKLRAGMRT 317
           SRSAKLR   R 
Sbjct: 293 SRSAKLRIAERV 304


>gi|77462648|ref|YP_352152.1| methyltransferase MraW/YabC [Rhodobacter sphaeroides 2.4.1]
 gi|88909216|sp|Q3J4N3|RSMH_RHOS4 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|77387066|gb|ABA78251.1| methyltransferase MraW/YabC [Rhodobacter sphaeroides 2.4.1]
          Length = 331

 Score =  363 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 144/331 (43%), Positives = 200/331 (60%), Gaps = 5/331 (1%)

Query: 11  SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPF 69
           +        H+PVLL  ++A + P      LD TFGAGGY+R   + G+  VI +DRDP 
Sbjct: 2   AEADTERRPHIPVLLRPLLAAVAPVE-GTWLDGTFGAGGYARGLLEAGADRVIGVDRDPL 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
           A+        DY ++  L   TFSQL  +     +DGVV DLGVSSMQ+D  +RGFSFQK
Sbjct: 61  ALKMASGWAGDYGDRLRLVAGTFSQLDSHAGAP-LDGVVLDLGVSSMQLDLAERGFSFQK 119

Query: 130 SGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            GPLDMRMS  G SA+D+VN A+ + L  IL   GEE+ + RIA AIV+ R +AP   T 
Sbjct: 120 DGPLDMRMSQEGESAADLVNTASEETLADILYHYGEERASRRIARAIVEARAAAPITRTL 179

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            L+ ++ + +   K  ++HPATRSFQA+RI VN E  EL +GL +AE+AL+ GG L VV+
Sbjct: 180 ALAEIVARCLPRPKPGQMHPATRSFQAIRIAVNAEFSELVEGLEAAERALRPGGRLAVVT 239

Query: 250 FHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK+F   RS G+    R+   + A    F    ++ + P + ++A N R+RS
Sbjct: 240 FHSLEDRIVKRFLQLRSGGEGQGNRYAPETRADAPRFTLPLRRAISPDEAELAENPRARS 299

Query: 309 AKLRAGMRTVERSIE-DDSFVHLPRLPTLSQ 338
           A+LR G+RT   + + D   +  P +P   +
Sbjct: 300 ARLRVGVRTDAPAGKVDPQALGTPLIPKKGR 330


>gi|332969039|gb|EGK08079.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Kingella
           kingae ATCC 23330]
          Length = 321

 Score =  363 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 108/313 (34%), Positives = 168/313 (53%), Gaps = 10/313 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPF 69
           ++    +H+ VLL + +A LN  P  V +D TFG GG+SR           +I  D+DP 
Sbjct: 1   MNTQTFEHITVLLHEAVAALNIQPNGVYVDGTFGRGGHSRLILSQLGEQGRLIVFDKDPQ 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFS 126
           A+    + +     + S+    F+  +    + G   +DG +FDLG+SS Q+D G RGFS
Sbjct: 61  AIEVA-QKLAQQDARVSVVHNGFATFEAACTNLGLDKIDGALFDLGISSPQVDDGSRGFS 119

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           F+   PLDMRM  + G SA++ +  A+ +++  ++   GEE+ + +IA  IV +R  +P 
Sbjct: 120 FRFDAPLDMRMDTTRGQSAAEWLAVASEQEIHEVIKNYGEERFSRQIARTIVAQRSESPI 179

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            TT+ L+++  + V  S+      ATR+FQA+RIF+N E++E+ Q L      L  GG L
Sbjct: 180 NTTRQLAAITAQCV-RSRERGQDRATRTFQAIRIFINRELDEVEQVLPQVVNRLNVGGRL 238

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
            V++FHSLEDR+VK+F    S      +   I     P     +  K    + ++V  N 
Sbjct: 239 AVIAFHSLEDRIVKQFMRQHSSHAPLPKWAAIKEADLPQPPLQLIGKASKASVQEVQHNP 298

Query: 305 RSRSAKLRAGMRT 317
           R+RSA LR   RT
Sbjct: 299 RARSAVLRVAERT 311


>gi|283783869|ref|YP_003363734.1| S-adenosyl-L-methionine-dependent methyltransferase [Citrobacter
           rodentium ICC168]
 gi|282947323|emb|CBG86868.1| S-adenosyl-L-methionine-dependent methyltransferase [Citrobacter
           rodentium ICC168]
          Length = 313

 Score =  363 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 118/312 (37%), Positives = 180/312 (57%), Gaps = 19/312 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++  Q
Sbjct: 6   KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAQ 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +FS+    FS L +YV ++     +DG++ DLGVSS Q+D  +RGFSF + G
Sbjct: 66  TI---NDPRFSIIHGPFSALAEYVAERNLTGRIDGILLDLGVSSPQLDDAERGFSFMRDG 122

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   T++
Sbjct: 123 PLDMRMDPTRGQSAAEWLQSAEEADIAWVLKTFGEERFAKRIARAIVERNREQPMTRTKE 182

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L  GG L ++SF
Sbjct: 183 LAEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSIISF 241

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNRR 305
           HSLEDR+VK+F   +S        +  +            +++ K  ++P +++VA N R
Sbjct: 242 HSLEDRIVKRFMREQSRGPKVPAGIPMTEEQLSKLGGRELRALGK--LMPGEKEVAENPR 299

Query: 306 SRSAKLRAGMRT 317
           +RS+ LR   RT
Sbjct: 300 ARSSVLRIAERT 311


>gi|315633809|ref|ZP_07889098.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Aggregatibacter segnis ATCC 33393]
 gi|315477059|gb|EFU67802.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Aggregatibacter segnis ATCC 33393]
          Length = 322

 Score =  363 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 124/324 (38%), Positives = 176/324 (54%), Gaps = 20/324 (6%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           MS     +  +H  VLL + +  L      + +D TFG GG+SR           +IA+D
Sbjct: 1   MSHLNAFSSAEHATVLLHETVDGLALKENGIYIDGTFGRGGHSRLILSKLSANGRLIAID 60

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCG 121
           RDP AV   Q+       +F +  + FS +            +DG++ DLGVSS Q+D  
Sbjct: 61  RDPKAVVEAQKI---QDSRFHIEHSAFSDILPICEKLNLVGKIDGILLDLGVSSPQLDDA 117

Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF K GPLDMRM  S G+SA++ +   + +DL  +L   GEE+ A +IA AIV   
Sbjct: 118 ERGFSFMKDGPLDMRMDDSKGMSAAEWLQHVSEQDLAWVLKTFGEERFAKKIASAIVNYN 177

Query: 181 QSAP------FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234
           +SA          T  L+ LI +TV F K+   HPATRSFQA+RIF+N+E++EL + L+S
Sbjct: 178 KSAVQNGGECLTRTLQLAELIAQTVPF-KDKHKHPATRSFQAIRIFINSELDELEKVLQS 236

Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ--SITKKV 292
           A   L  GG L ++SFHSLEDR+VK F   +S      + +          Q   +  K 
Sbjct: 237 ALTVLAPGGRLSIISFHSLEDRMVKHFMRKQSQGEDIPKGLPLREDQIQRNQTLKVIGKA 296

Query: 293 VVPTQEDVAFNRRSRSAKLRAGMR 316
           ++P+ E++A N R+RSA LR   R
Sbjct: 297 IMPSDEEIAQNPRARSAVLRIAER 320


>gi|303228441|ref|ZP_07315274.1| S-adenosyl-methyltransferase MraW [Veillonella atypica
           ACS-134-V-Col7a]
 gi|303230798|ref|ZP_07317545.1| S-adenosyl-methyltransferase MraW [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302514558|gb|EFL56553.1| S-adenosyl-methyltransferase MraW [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302516943|gb|EFL58852.1| S-adenosyl-methyltransferase MraW [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 310

 Score =  363 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 109/307 (35%), Positives = 161/307 (52%), Gaps = 10/307 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQ 75
           +HV VLL + +  +   P  + +D T G  G++ +          +I LD+D  A++  +
Sbjct: 4   NHVSVLLNETVDSVVTNPDGIYVDCTLGGAGHAHAVGERLSSQGMIIGLDQDEDALAVAR 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + + D   Q       FS L+  + ++G   VDG +FDLGVSS Q+D  +RGFS+   GP
Sbjct: 64  QRLSDLTCQVMTIPTNFSDLKHALEEQGIYEVDGFIFDLGVSSYQLDTPERGFSYMNDGP 123

Query: 133 LDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM      +A  VVN+     L +I+   GEE+ A RI   IV  R      TT +L
Sbjct: 124 LDMRMDKEAPITAEIVVNEYESDKLLQIIRDYGEERWAKRIVEFIVAARNEKRITTTGEL 183

Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
            S+I+K +    + +  HPA R+FQA+RI VN E+  L      A   LK  G + V++F
Sbjct: 184 VSIIKKAIPAKARQDGPHPAKRTFQAIRIEVNRELAILHDSFVDAVSMLKPKGRIGVITF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+ K+ F   S   +      +    H AV ++   K + P+  +V  N RSRSA
Sbjct: 244 HSLEDRITKQTFKELSTACICPPELPVCVCHHKAVLKAKN-KAIEPSAGEVEMNPRSRSA 302

Query: 310 KLRAGMR 316
           KLR G++
Sbjct: 303 KLRVGIK 309


>gi|152988306|ref|YP_001350328.1| S-adenosyl-methyltransferase MraW [Pseudomonas aeruginosa PA7]
 gi|262825003|sp|A6VB93|RSMH_PSEA7 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|150963464|gb|ABR85489.1| S-adenosyl-methyltransferase MraW [Pseudomonas aeruginosa PA7]
          Length = 313

 Score =  363 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 120/313 (38%), Positives = 180/313 (57%), Gaps = 14/313 (4%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAV 71
           +    H+ VLLE+ ++ L P      LD TFG GG+SR+  +    G  ++  D+DP A+
Sbjct: 2   NATYRHITVLLEEAVSALAPREDGCYLDGTFGRGGHSRALLEKLGTGGRLLGFDKDPQAI 61

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSF 127
             G + +     +F + Q +F++L D V  +G    VDGV+ DLGVSS Q+D  +RGFSF
Sbjct: 62  QTG-KALAAEDGRFVIVQRSFAELGDEVRARGLEGRVDGVLLDLGVSSPQLDDPERGFSF 120

Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
              GPLDMRM+   GISA++ +  A  +++ R+    GEE+ A R+A AIV+RRQ  PF+
Sbjct: 121 LNDGPLDMRMNPGQGISAAEFIASAAEEEIARVFKEYGEERFAKRMARAIVQRRQERPFE 180

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
            T DL+ +I       +  + +PATR+FQ LRI VNNE+ +L +GL +A ++L  GG L+
Sbjct: 181 RTADLAEVITVANPAWEKGK-NPATRAFQGLRIHVNNELGDLERGLDAALESLAVGGRLV 239

Query: 247 VVSFHSLEDRLVKKFFASRSG---KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
           V+SFHSLEDR+VK F    +      +     I S       + +  K    ++ ++  N
Sbjct: 240 VISFHSLEDRIVKLFMRKHAKGEADNLPRDLPIRSKVFEPRLKLL-GKPQYASEAELKAN 298

Query: 304 RRSRSAKLRAGMR 316
            RSRSA +R   +
Sbjct: 299 PRSRSAVMRVAEK 311


>gi|218893511|ref|YP_002442380.1| S-adenosyl-methyltransferase MraW [Pseudomonas aeruginosa LESB58]
 gi|262825031|sp|B7UZJ8|RSMH_PSEA8 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|218773739|emb|CAW29553.1| putative methyltransferase [Pseudomonas aeruginosa LESB58]
          Length = 313

 Score =  363 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 120/313 (38%), Positives = 181/313 (57%), Gaps = 14/313 (4%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAV 71
           +    H+ VLLE+ ++ L P      LD TFG GG+SR+  +    G  ++  D+DP A+
Sbjct: 2   NATYRHITVLLEEAVSALAPREDGCYLDGTFGRGGHSRALLEKLGAGGRLLGFDKDPQAI 61

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSF 127
             G + +     +F + Q +F++L D V  +G    +DGV+ DLGVSS Q+D  +RGFSF
Sbjct: 62  QTG-KALAAEDGRFVIVQRSFAELGDEVRARGLEGRIDGVLLDLGVSSPQLDDPERGFSF 120

Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
              GPLDMRM+   GISA++ +  A  +++ R+    GEE+ A R+A AIV+RRQ  PF+
Sbjct: 121 LNDGPLDMRMNPGQGISAAEFIANAAEEEIARVFKEYGEERFAKRMARAIVQRRQERPFE 180

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
            T DL+ +I       +  + +PATR+FQ LRI VNNE+ +L +GL +A ++L  GG L+
Sbjct: 181 RTADLAEVITVANPAWEKGK-NPATRAFQGLRIHVNNELGDLERGLDAALESLAVGGRLV 239

Query: 247 VVSFHSLEDRLVKKFFASRSG---KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
           V+SFHSLEDR+VK F    +      +     I S       + +  K    ++E++  N
Sbjct: 240 VISFHSLEDRIVKLFMRKHAKGEADNLPRDLPIRSKVFEPRLKLL-GKPQYASEEELKAN 298

Query: 304 RRSRSAKLRAGMR 316
            RSRSA +R   +
Sbjct: 299 PRSRSAVMRVAEK 311


>gi|270295456|ref|ZP_06201657.1| methylase MraW [Bacteroides sp. D20]
 gi|317478454|ref|ZP_07937614.1| MraW methylase [Bacteroides sp. 4_1_36]
 gi|270274703|gb|EFA20564.1| methylase MraW [Bacteroides sp. D20]
 gi|316905343|gb|EFV27137.1| MraW methylase [Bacteroides sp. 4_1_36]
          Length = 306

 Score =  363 bits (932), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 107/312 (34%), Positives = 165/312 (52%), Gaps = 16/312 (5%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69
           +      H+PVLL   +  +N  P    +D TFG GG+SR        G  +++ D+D  
Sbjct: 1   MKEETTYHIPVLLMPSVDAMNIRPDGTYVDVTFGGGGHSREILSRLEDGGRLLSFDQDED 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFS 126
           A     E        F+  ++ F  L +++   G   VD ++ DLGVSS   D  +RGFS
Sbjct: 61  A-----ERNIVNNPHFTFVRSNFRYLHNFLRYHGIEKVDAILADLGVSSHHFDDSERGFS 115

Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           F+  G LDMRM+  +G++A+D+VN    + L  I  + GE K + ++A  IVK R +   
Sbjct: 116 FRFDGALDMRMNKRAGLTAADIVNTYEEEKLADIFYLYGELKNSRKLASVIVKARATQRI 175

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            T  +   +++    F +        + FQALRI VN E+E L + L +A +ALK GG L
Sbjct: 176 ATIGEFLEIVKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLYAATEALKPGGRL 233

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           +V+++HSLEDR+VK    + + +  A +    +   P  F+ +  KV+VP +E++  N R
Sbjct: 234 VVITYHSLEDRMVKNIMKTGNVEGKAEKDFFGNVLTP--FRLVNNKVIVPDEEEIERNPR 291

Query: 306 SRSAKLRAGMRT 317
           SRSAKLR   R 
Sbjct: 292 SRSAKLRIAERV 303


>gi|238797714|ref|ZP_04641209.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia
           mollaretii ATCC 43969]
 gi|238718466|gb|EEQ10287.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia
           mollaretii ATCC 43969]
          Length = 320

 Score =  363 bits (932), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 121/312 (38%), Positives = 176/312 (56%), Gaps = 15/312 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H  VLL++ +  LN     + +D TFG GG+SR           +IA+DRDP A+   +
Sbjct: 13  KHTSVLLDEAVNGLNIRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDRDPQAIEAAK 72

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +FS+    FS+L  YV +      +DG++ DLGVSS Q+D  +RGFSF + G
Sbjct: 73  SI---TDPRFSIVHGPFSELAHYVRELDLVGRIDGILLDLGVSSPQLDDPERGFSFMRDG 129

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  S G+SA++ + +A+  D+  +L   GEE+ A R+A AIV+R  + P   T++
Sbjct: 130 PLDMRMDPSRGLSAAEWLMKASADDIAWVLKTFGEERFAKRLAKAIVERNLTQPMTRTKE 189

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ LI     F + ++ HPATRSFQA+RI++N+E+EE+ + L  A + L   G L V+SF
Sbjct: 190 LADLIANASPFREKHK-HPATRSFQAIRIYINSELEEIERALDGAHEVLAPEGRLSVISF 248

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNRRSR 307
           HSLEDR+VK F   RS        +  + A        T K +   +P   +VA N R+R
Sbjct: 249 HSLEDRIVKNFIRQRSRGPQVPAGLPLTEAQLRSMGGRTMKSIGKMMPADAEVAENPRAR 308

Query: 308 SAKLRAGMRTVE 319
           S+ LR   R  E
Sbjct: 309 SSVLRFAERIKE 320


>gi|199598136|ref|ZP_03211558.1| SAM-dependent methyltransferase for cell envelope biogenesis
           [Lactobacillus rhamnosus HN001]
 gi|199590897|gb|EDY98981.1| SAM-dependent methyltransferase for cell envelope biogenesis
           [Lactobacillus rhamnosus HN001]
          Length = 313

 Score =  363 bits (932), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 110/313 (35%), Positives = 156/313 (49%), Gaps = 10/313 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73
           T   H  VLL++  A L        +DAT G GG++R          +IA D+D  A++ 
Sbjct: 2   TEFKHETVLLKEATAALAVKSDGTYVDATLGRGGHTRQILNQLTNGRLIAFDQDEAAIAA 61

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +        Q +L    F  L   + D     VDGV++DLGVSS Q D   RGFS++  
Sbjct: 62  VKRQFGTLPPQLTLVHRNFRDLSAALADLDIRQVDGVLYDLGVSSPQFDDSKRGFSYRFD 121

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM     + A  +VN+    +L RI    GEE  + +IA  I + R  AP  TT 
Sbjct: 122 APLDMRMDQRQTLDAKTIVNEWPYAELVRIFSRYGEEHFSKQIARRIEQARAQAPITTTF 181

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L  LI+  +    +    HPA + FQA+RI VN+E+  L   L  A K +  GG + V+
Sbjct: 182 QLVELIKAGIPAKARRTGGHPAKKVFQAIRIAVNDELSALEASLEQALKLINVGGRISVI 241

Query: 249 SFHSLEDRLVKKFFASRS--GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           +F SLEDRLVK  F   S    V     ++P  A P  +Q + +K ++P+  ++A N R+
Sbjct: 242 TFQSLEDRLVKTMFKEVSTVQDVPRGLPVVPEAAQPH-YQLVNRKPILPSAAELAENHRA 300

Query: 307 RSAKLRAGMRTVE 319
            SAKLR   +   
Sbjct: 301 HSAKLRVIEKIRN 313


>gi|238650666|ref|YP_002916519.1| S-adenosyl-methyltransferase MraW [Rickettsia peacockii str.
           Rustic]
 gi|259495904|sp|C4K1M0|RSMH_RICPU RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|238624764|gb|ACR47470.1| S-adenosyl-methyltransferase MraW [Rickettsia peacockii str.
           Rustic]
          Length = 307

 Score =  363 bits (932), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 130/307 (42%), Positives = 185/307 (60%), Gaps = 5/307 (1%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQ 75
           I  HV V+L K++  L+P  G+  LD TFGAGGYS++  +     V ALDRDP  +   +
Sbjct: 2   IQSHVSVMLNKMLEALSPKAGESYLDCTFGAGGYSKAILESCNCYVTALDRDPNVIKRAE 61

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           E  ++Y E+F   +  F+     + +K  DG+V DLGVSSMQ+D  DRGFSF   GPLDM
Sbjct: 62  EIQQNYGERFDFVETNFAGSFAKLKEKKFDGIVLDLGVSSMQLDIADRGFSFLHDGPLDM 121

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RMS  G+SA + VN A  K+L  ++   G+E  + RIA  IV+ R++A   +T  L+ ++
Sbjct: 122 RMSGQGLSAEEFVNAAEAKELADVIYKYGDESFSRRIAKRIVEYRKTARIDSTGKLAEIV 181

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           + ++ F K  +I PAT++FQA+RI+VN+E+ EL Q L + +  LK  G L+VVSFHSLED
Sbjct: 182 RSSIGFRK-GKIDPATKTFQAIRIYVNDELGELEQFLVNVKNILKKDGRLVVVSFHSLED 240

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNA---HPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           R+VK FF   S K +        +         + IT K + P+ ++V  N R+RSAKLR
Sbjct: 241 RIVKNFFKENSEKPVVRSKYAKDDMTIDPNKWLKIITNKALAPSDKEVGLNIRARSAKLR 300

Query: 313 AGMRTVE 319
           A     E
Sbjct: 301 AAKAIYE 307


>gi|60679854|ref|YP_209998.1| S-adenosyl-methyltransferase MraW [Bacteroides fragilis NCTC 9343]
 gi|265764988|ref|ZP_06093263.1| MraW methylase [Bacteroides sp. 2_1_16]
 gi|81317074|sp|Q5LIJ0|RSMH_BACFN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|60491288|emb|CAH06036.1| putative S-adenosyl-methyltransferase [Bacteroides fragilis NCTC
           9343]
 gi|263254372|gb|EEZ25806.1| MraW methylase [Bacteroides sp. 2_1_16]
          Length = 304

 Score =  363 bits (932), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 107/310 (34%), Positives = 164/310 (52%), Gaps = 16/310 (5%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFA 70
                 HVPVLL++ +  +N +P    +D TFG GG+SR        G  ++  D+D  A
Sbjct: 3   EEETTYHVPVLLKESVDAMNISPDGTYVDVTFGGGGHSREILSRLGDGGRLLGFDQDEDA 62

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSF 127
                E        F+  ++ F  L +++       VD ++ DLGVSS   D  +RGFSF
Sbjct: 63  -----ERNIVNDPHFTFVRSNFRYLHNFLRYHDIGEVDAILADLGVSSHHFDDSERGFSF 117

Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           +  G LDMRM+  +GI+A+DVVN    + L  I  + GE K + ++A  IVK R     +
Sbjct: 118 RFDGKLDMRMNKRAGITAADVVNTYEEERLADIFYLYGELKNSRKLASVIVKARTGQKIE 177

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T  +   +I+    F +        + FQALRI VN E+E L + L +A +ALK GG L+
Sbjct: 178 TIGEFLEIIKPL--FGREREKKELAKIFQALRIEVNQEMEALKEMLMAATEALKPGGRLV 235

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+++HSLEDR+VK    + + +    +    +   P  F+ +  KV+VP ++++  N RS
Sbjct: 236 VITYHSLEDRMVKNIMKTGNVEGKTTQDFFGNLQTP--FRLVNNKVIVPDEDEITRNPRS 293

Query: 307 RSAKLRAGMR 316
           RSAKLR   +
Sbjct: 294 RSAKLRIAEK 303


>gi|126172646|ref|YP_001048795.1| S-adenosyl-methyltransferase MraW [Shewanella baltica OS155]
 gi|152998944|ref|YP_001364625.1| S-adenosyl-methyltransferase MraW [Shewanella baltica OS185]
 gi|160873530|ref|YP_001552846.1| S-adenosyl-methyltransferase MraW [Shewanella baltica OS195]
 gi|217971625|ref|YP_002356376.1| S-adenosyl-methyltransferase MraW [Shewanella baltica OS223]
 gi|304411651|ref|ZP_07393263.1| S-adenosyl-methyltransferase MraW [Shewanella baltica OS183]
 gi|307306297|ref|ZP_07586042.1| S-adenosyl-methyltransferase MraW [Shewanella baltica BA175]
 gi|262826489|sp|B8E4L2|RSMH_SHEB2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262826490|sp|A3CZL3|RSMH_SHEB5 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262826491|sp|A6WIC3|RSMH_SHEB8 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262826492|sp|A9KY21|RSMH_SHEB9 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|125995851|gb|ABN59926.1| S-adenosyl-methyltransferase MraW [Shewanella baltica OS155]
 gi|151363562|gb|ABS06562.1| S-adenosyl-methyltransferase MraW [Shewanella baltica OS185]
 gi|160859052|gb|ABX47586.1| S-adenosyl-methyltransferase MraW [Shewanella baltica OS195]
 gi|217496760|gb|ACK44953.1| S-adenosyl-methyltransferase MraW [Shewanella baltica OS223]
 gi|304349839|gb|EFM14245.1| S-adenosyl-methyltransferase MraW [Shewanella baltica OS183]
 gi|306911170|gb|EFN41597.1| S-adenosyl-methyltransferase MraW [Shewanella baltica BA175]
 gi|315265760|gb|ADT92613.1| S-adenosyl-methyltransferase MraW [Shewanella baltica OS678]
          Length = 313

 Score =  363 bits (932), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 116/307 (37%), Positives = 170/307 (55%), Gaps = 13/307 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H+ VLL + +  LN     + +D TFG GG+SR   +       +IA+DRDP A+   ++
Sbjct: 7   HLSVLLAETVGGLNIKDDGIYIDGTFGRGGHSRQVLQQLGENGRLIAIDRDPQAIEAAKQ 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              D   +F +    F QL DYV + G    +DGV+ DLGVSS Q+D  +RGFSF + GP
Sbjct: 67  FADD--PRFQIVHGGFGQLADYVEELGLVGKIDGVLLDLGVSSPQLDDAERGFSFMRDGP 124

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G +A+  + +A ++D+  +    GEEK A  IA  I   R   PF  T+DL
Sbjct: 125 LDMRMDNSQGQTAAQWLARAEIEDMAWVFKTYGEEKNARHIARCIAADRDKTPFLRTKDL 184

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI +     + N+ HPATR FQA+RI++N+E++++ Q L  A   L   G L V+SFH
Sbjct: 185 ADLIARITKSKERNK-HPATRVFQAIRIYINSELDQIDQALEGAVNVLAPQGRLSVISFH 243

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI--TKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK+F    S           +       + +    K ++P+ E++  N R+RS+
Sbjct: 244 SLEDRIVKRFIRRHSQGESVPHGFPVTEDQINKSRKLRAVGKAIMPSDEEIERNARARSS 303

Query: 310 KLRAGMR 316
            LR   R
Sbjct: 304 VLRIAER 310


>gi|328955350|ref|YP_004372683.1| S-adenosyl-methyltransferase MraW [Coriobacterium glomerans PW2]
 gi|328455674|gb|AEB06868.1| S-adenosyl-methyltransferase MraW [Coriobacterium glomerans PW2]
          Length = 321

 Score =  363 bits (932), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 118/320 (36%), Positives = 175/320 (54%), Gaps = 12/320 (3%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65
           M++        H PV++ +V+  L P    VI+D T G  G++    +       +I +D
Sbjct: 1   MANGTLTPEYQHEPVMVAEVLEALRPEESSVIVDCTLGGAGHAVRLAREMGPEGQLIGID 60

Query: 66  RDPFAVSCGQETMRDYKEQF--SLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDC 120
           +D  A++     +          L +  F  L + +      GVDG +FDLGVSS Q+D 
Sbjct: 61  QDDMALNSAAARLDREVPGVAHRLMKGNFRDLDELLCAAEVPGVDGFLFDLGVSSPQLDI 120

Query: 121 GDRGFSFQKSGPLDMRMSCS--GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178
            +RGFS+ +  PLDMRM     G SA+DVVN  +  +L RIL   GEE+ A  IA  IV+
Sbjct: 121 PNRGFSYHEDAPLDMRMDPQSGGPSAADVVNGYSEAELIRILHAFGEERFAGAIAREIVR 180

Query: 179 RRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
           RR++ P  TT +L  +I+  +  + +    HPA RSFQA+RI VN+E++ L  GL++A +
Sbjct: 181 RRKTKPISTTTELVEVIKAAIPAAARRQGPHPARRSFQAIRIEVNHELDALLIGLQAALR 240

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPT 296
            L   G + V+S+HSLEDR+VK+ F S S          +    +  + + ITKK +V T
Sbjct: 241 WLNPAGRICVISYHSLEDRIVKRLFQSASRGCTCPPDIPVCVCGNVPILKVITKKPLVAT 300

Query: 297 QEDVAFNRRSRSAKLRAGMR 316
            E+V  N RSRSAK+R  M+
Sbjct: 301 TEEVERNPRSRSAKIRVAMK 320


>gi|229552071|ref|ZP_04440796.1| S-adenosyl-methyltransferase [Lactobacillus rhamnosus LMS2-1]
 gi|229314504|gb|EEN80477.1| S-adenosyl-methyltransferase [Lactobacillus rhamnosus LMS2-1]
          Length = 313

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 110/313 (35%), Positives = 156/313 (49%), Gaps = 10/313 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73
           T   H  VLL++  A L        +DAT G GG++R          +IA D+D  A++ 
Sbjct: 2   TEFKHETVLLKEATAALAVKSDGTYVDATLGRGGHTRQILNQLTNGRLIAFDQDEAAIAA 61

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +        Q +L    F  L   + D     VDGV++DLGVSS Q D   RGFS++  
Sbjct: 62  VKRHFGTLPPQLTLVHRNFRDLSAALADLDIRQVDGVLYDLGVSSPQFDDSKRGFSYRFD 121

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM     + A  +VN+    +L RI    GEE  + +IA  I + R  AP  TT 
Sbjct: 122 APLDMRMDQRQTLDAKTIVNEWPYAELVRIFSRYGEEHFSKQIARRIEQARAQAPITTTF 181

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L  LI+  +    +    HPA + FQA+RI VN+E+  L   L  A K +  GG + V+
Sbjct: 182 QLVELIKAGIPAKARRTGGHPAKKVFQAIRIAVNDELSALEASLEQALKLINVGGRISVI 241

Query: 249 SFHSLEDRLVKKFFASRS--GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           +F SLEDRLVK  F   S    V     ++P  A P  +Q + +K ++P+  ++A N R+
Sbjct: 242 TFQSLEDRLVKTMFKEVSTVQDVPRGLPVVPEAAQPH-YQLVNRKPILPSAAELAENHRA 300

Query: 307 RSAKLRAGMRTVE 319
            SAKLR   +   
Sbjct: 301 HSAKLRVIEKIRN 313


>gi|22299615|ref|NP_682862.1| putative methyltransferase [Thermosynechococcus elongatus BP-1]
 gi|30173039|sp|Q8DH87|RSMH_THEEB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|22295799|dbj|BAC09624.1| tlr2072 [Thermosynechococcus elongatus BP-1]
          Length = 290

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 117/303 (38%), Positives = 169/303 (55%), Gaps = 25/303 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQET 77
           H PVL   V+  L P  G + LDAT G GG++    +      V+A+D+DP A++  QE 
Sbjct: 10  HQPVLAPAVLEALQPKAGGLYLDATVGGGGHTALLLRREPTCRVLAIDQDPMALAAAQEF 69

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
           +  + ++   +   F+ L   V +   DG++ DLGVSS Q+D  +RGFSF+   PLDMRM
Sbjct: 70  LAPFGDRVQFWHGNFADLP--VAEPMFDGILADLGVSSAQLDRPERGFSFRFDAPLDMRM 127

Query: 138 SC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
           +  + ++A+ V+N  + ++L  I    GEE+ A RIA  IV RR   P   TQ+L+ L+ 
Sbjct: 128 NPANPLTAATVINHYSEQELADIFYEYGEERFARRIARQIVARR---PLNRTQELAQLVA 184

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
             +  S   RIHPATR FQALRI+VN E+  L Q L  +   LK  G + V+SFHSLEDR
Sbjct: 185 HCLKASPRQRIHPATRVFQALRIYVNQELAVLDQFLARSPHWLKPTGRIAVISFHSLEDR 244

Query: 257 LVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
            VK+ + +                   + + +T+K +V    +V+ N RSRSAKLR  +R
Sbjct: 245 RVKQAWRAN-----------------PLLEVVTRKPIVADAVEVSLNPRSRSAKLRIAVR 287

Query: 317 TVE 319
           T  
Sbjct: 288 TSA 290


>gi|91228506|ref|ZP_01262428.1| S-adenosyl-methyltransferase [Vibrio alginolyticus 12G01]
 gi|269967393|ref|ZP_06181453.1| S-adenosyl-methyltransferase mraW [Vibrio alginolyticus 40B]
 gi|91187940|gb|EAS74250.1| S-adenosyl-methyltransferase [Vibrio alginolyticus 12G01]
 gi|269827981|gb|EEZ82255.1| S-adenosyl-methyltransferase mraW [Vibrio alginolyticus 40B]
          Length = 316

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 116/316 (36%), Positives = 169/316 (53%), Gaps = 18/316 (5%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72
               H+ VLL + I  L   P  V +D TFG GG+SR+          + ++DRDP A++
Sbjct: 3   ETFQHISVLLNESIDGLAIKPDGVYIDGTFGRGGHSRTILSKLGENGRLYSIDRDPQAIA 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128
              +       +F++    FS + +Y  + G    VDGV+ DLGVSS Q+D  +RGFSF 
Sbjct: 63  EAGKI---NDPRFTIIHGPFSGIAEYAEEYGLVGKVDGVLLDLGVSSPQLDDAERGFSFM 119

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ---SAP 184
           K GPLDMRM   SG+  S  + +A++ D+T ++   GE+K A RIA AIV  R+   + P
Sbjct: 120 KDGPLDMRMDPTSGVPVSQWLMEADLDDITWVIREFGEDKHARRIAKAIVAYREDEENEP 179

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
              T  L+ LI      S   + HPATR+FQA RI++N+E+EE+   L+ A   L   G 
Sbjct: 180 MVRTGQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAASILAPEGR 239

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK----KVVVPTQEDV 300
           L V+SFHSLEDR+VK+F    S        +  +        S       K + P+++++
Sbjct: 240 LSVISFHSLEDRMVKRFIRKESKGPEVPHGIPMTEEQIRALGSANMKAVSKAIKPSKQEI 299

Query: 301 AFNRRSRSAKLRAGMR 316
             N RSRS+ LR   +
Sbjct: 300 EMNPRSRSSVLRIAEK 315


>gi|51473750|ref|YP_067507.1| S-adenosyl-methyltransferase MraW [Rickettsia typhi str.
           Wilmington]
 gi|116241372|sp|Q68WG7|RSMH_RICTY RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|51460062|gb|AAU04025.1| S-adenosyl-methyltransferase MraW [Rickettsia typhi str.
           Wilmington]
          Length = 306

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 122/303 (40%), Positives = 183/303 (60%), Gaps = 5/303 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETM 78
           H+PV+L +V+ +L P   +  LD TFGAGGYS +  K    +V +LD DP  +   ++  
Sbjct: 5   HIPVMLSEVLEVLAPKGYESYLDCTFGAGGYSNAILKSCYCSVTSLDCDPHVIERVEQIK 64

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138
           +DY E+FS  +  F+     +  +  DG+V DLGVSSMQ+D   RGFSF   GPLDMRMS
Sbjct: 65  QDYGERFSFIKTNFADSFGKLKQQKFDGIVMDLGVSSMQLDIAGRGFSFLYDGPLDMRMS 124

Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198
             G SA + VN A+ ++++ ++   G E  + RIA  I+K R+ A   +T+ L+ +++ +
Sbjct: 125 AQGFSAEEFVNTADEEEISDVIYKYGNESLSRRIAKNIIKYRKIARIDSTRKLAEIVRYS 184

Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258
           + F K  +I  AT++FQA+RI++NNE+ EL + L + +  LK  G L+VVSFHSLEDR+V
Sbjct: 185 IGFRK-GKIDSATKTFQAIRIYINNELGELERFLANVKNILKKNGRLVVVSFHSLEDRIV 243

Query: 259 KKFFASRSGKVMAVRHMIPSN---AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           K FF   S K +A                 + IT KV+ P+ +++  N R+RSAKLRA  
Sbjct: 244 KNFFKENSAKPVARSKYAKDEIKIDQNKWLEIITHKVLTPSSQEIRLNVRARSAKLRAAK 303

Query: 316 RTV 318
           + +
Sbjct: 304 KIL 306


>gi|119512962|ref|ZP_01632023.1| S-adenosyl-methyltransferase [Nodularia spumigena CCY9414]
 gi|119462375|gb|EAW43351.1| S-adenosyl-methyltransferase [Nodularia spumigena CCY9414]
          Length = 302

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 116/302 (38%), Positives = 171/302 (56%), Gaps = 26/302 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCGQET 77
           HVPVL ++V+  L   PG   LDAT G GG+SR   +  ++V   A+D+D  A+   Q+ 
Sbjct: 15  HVPVLSQEVVEGLAVRPGGHYLDATVGGGGHSRLILEAATDVRLTAIDQDEDALGAAQKH 74

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
           + ++ ++     + FS  +        DG++ DLGVSS  +D  +RGFSF+ +  LDMRM
Sbjct: 75  LAEFGDRVEFIHSNFSAYK--YSPNTFDGILADLGVSSYHLDQPERGFSFRHAANLDMRM 132

Query: 138 SCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
           +    ++A+DV+N+ +  +L  I    GEE+ + RIA  IV++R   PF+TT +L+  I 
Sbjct: 133 NQQQSLTAADVINEWDEAELADIFFKYGEERLSRRIARRIVEKR---PFETTTELAEAIA 189

Query: 197 KTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
            +V    +  RIHPATR FQALRI VN+E++ L   L  A  AL  GG + ++SFHSLED
Sbjct: 190 YSVPRQYRYGRIHPATRVFQALRIVVNDELKALETFLDQAPNALVPGGRIAIISFHSLED 249

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           R VK    + S                 + + +TKK +   +E++A N RSRSAKLR   
Sbjct: 250 RPVKHGLRNSS-----------------LLKVLTKKPITAKEEELANNPRSRSAKLRIAQ 292

Query: 316 RT 317
           R 
Sbjct: 293 RV 294


>gi|253998164|ref|YP_003050227.1| S-adenosyl-methyltransferase MraW [Methylovorus sp. SIP3-4]
 gi|253984843|gb|ACT49700.1| S-adenosyl-methyltransferase MraW [Methylovorus sp. SIP3-4]
          Length = 321

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 119/311 (38%), Positives = 172/311 (55%), Gaps = 13/311 (4%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSC 73
           +  HV VLLE+ +A L   P  + +D TFG GG+SR   +       ++ LDRD  AVS 
Sbjct: 13  VSPHVSVLLEEAVAALAIKPNGIYVDGTFGRGGHSRKILEQLGADGRLLGLDRDLAAVSA 72

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +        +FS+    FS+L + +  +    VDGV+ DLG+SS QID G+RGFSF+  
Sbjct: 73  ARSI---QDPRFSIHHHHFSELGEVLRAQDIQQVDGVLLDLGISSPQIDEGERGFSFRFD 129

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA-PFQTT 188
           GPLDMRM  S G +A++ + +A+ + LT ++   GEE+ A ++A AIV  R       TT
Sbjct: 130 GPLDMRMDQSRGQTAAEFLAEASEQQLTGVIKEYGEERFAKQVARAIVAARTGGDALTTT 189

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ ++   +   +  +  PATR+FQALRIF+N E+EEL+  L     AL  GG L V+
Sbjct: 190 GQLAKVVAGAIPKVEPGQ-DPATRTFQALRIFLNQELEELSLVLPQCLDALAPGGRLAVI 248

Query: 249 SFHSLEDRLVKKFFA-SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           SFHSLEDR+VK+F    +    +     + +   P        K + P+  ++  N RSR
Sbjct: 249 SFHSLEDRIVKRFVRSEQDRDDLPANFPVLAKDLPQPRMMAVGKPIKPSAAEIKRNPRSR 308

Query: 308 SAKLRAGMRTV 318
           SA LR   RT 
Sbjct: 309 SAVLRVAERTE 319


>gi|260767165|ref|ZP_05876108.1| S-adenosyl-methyltransferase MraW [Vibrio furnissii CIP 102972]
 gi|260617839|gb|EEX43015.1| S-adenosyl-methyltransferase MraW [Vibrio furnissii CIP 102972]
          Length = 316

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 125/314 (39%), Positives = 176/314 (56%), Gaps = 22/314 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H+ VLL + I  L   P  + +D TFG GG+SR+          + ++DRDP A++  Q+
Sbjct: 7   HISVLLHESIDGLAIKPDGIYIDGTFGRGGHSRTILSQLGPNGRLYSIDRDPQAIAEAQK 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  +F++    FS + +Y         VDGV+FDLGVSS Q+D  +RGFSF K GP
Sbjct: 67  I---DDPRFTIVHGPFSGIAEYAARYELVGKVDGVLFDLGVSSPQLDDAERGFSFMKDGP 123

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---PFQTT 188
           LDMRM   SG+  SD + QA++ D+T ++   GE+K A RIA AIV  R++    P   T
Sbjct: 124 LDMRMDPTSGMPVSDWLAQADLDDITWVIREFGEDKHARRIAKAIVAYRENEENEPLTRT 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ LI      S   + HPATR+FQA RI++N+E+EE+   L+ A   L   G L V+
Sbjct: 184 SQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAASILAPQGRLSVI 243

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHP------AVFQSITKKVVVPTQEDVAF 302
           SFHSLEDR+VK+F    S K   V H IP           A  +++  K + P++ +VA 
Sbjct: 244 SFHSLEDRMVKRFMRKES-KGPEVPHGIPLTQEQIRALGSADLKTV-GKAIKPSEHEVAM 301

Query: 303 NRRSRSAKLRAGMR 316
           N RSRS+ LR   +
Sbjct: 302 NPRSRSSVLRIAEK 315


>gi|146305949|ref|YP_001186414.1| S-adenosyl-methyltransferase MraW [Pseudomonas mendocina ymp]
 gi|262825105|sp|A4XQR6|RSMH_PSEMY RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|145574150|gb|ABP83682.1| S-adenosyl-methyltransferase MraW [Pseudomonas mendocina ymp]
          Length = 314

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 116/315 (36%), Positives = 179/315 (56%), Gaps = 14/315 (4%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69
           +  +   H+ VLL++ +  L        +D TFG GG+SR        G  ++  D+DP 
Sbjct: 1   MTDSTLRHITVLLDEAVEGLAVRADGCYIDGTFGRGGHSRLILHKLGPGGRLLGFDKDPL 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGF 125
           A++ G E +     +F + Q +F++L D    +G    V GV+ DLGVSS Q+D  +RGF
Sbjct: 61  AIATG-EALAAEDGRFVVVQRSFAELGDEAVVRGISGQVSGVLLDLGVSSPQLDDPERGF 119

Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF   GPLDMRM+   G+SA+D +  A   ++ R+L   GEE+ A R+A A+V+RR+  P
Sbjct: 120 SFLNDGPLDMRMNPDVGVSAADWIATAEEDEIARVLKDYGEERFAKRMARAVVQRREQQP 179

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           F  T DL+ ++ +     +  + +PATR+FQ +RI+VNNE+ +L +GL +A +AL+ GG 
Sbjct: 180 FTRTADLAKVLTEANPAWEKGK-NPATRAFQGIRIYVNNELGDLERGLDAALEALEVGGR 238

Query: 245 LIVVSFHSLEDRLVKKFFASRSG---KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           L+V+SFHSLEDR+VK+F   ++      +     I   A     + I  K V     ++ 
Sbjct: 239 LVVISFHSLEDRIVKQFMKRQAKGEADKLPRDLPIIPKAFEPRLKLI-GKPVYAGDAELK 297

Query: 302 FNRRSRSAKLRAGMR 316
            N RSRSA +R   +
Sbjct: 298 ANPRSRSAVMRIAEK 312


>gi|255068190|ref|ZP_05320045.1| S-adenosyl-methyltransferase MraW [Neisseria sicca ATCC 29256]
 gi|255047532|gb|EET42996.1| S-adenosyl-methyltransferase MraW [Neisseria sicca ATCC 29256]
          Length = 317

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 116/317 (36%), Positives = 172/317 (54%), Gaps = 14/317 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           MS+A +     H+ VLL + +  L      + +D TFG GG+SR           +I  D
Sbjct: 1   MSNAEYQ----HITVLLNEAVDALAVREDGIYVDGTFGRGGHSRLILSRLGSQGRLIVFD 56

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGD 122
           +DP A+    + + +   + ++    FS  Q   D +  + +DG +FDLG+SS QID G 
Sbjct: 57  KDPQAIEAA-QKLAEQDGRVTVVHDRFSSFQTTLDKLDIEEIDGALFDLGISSPQIDDGA 115

Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF+   PLDMRM  + G+SA++ +  A+ +DL  ++   GEE+ + +IA AIV +R 
Sbjct: 116 RGFSFRFDAPLDMRMDPTRGMSAAEWIATASEQDLHEVIKNYGEERFSRQIARAIVAQRT 175

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            +P  TT+ L+ L+ + V   +  +  PATR+FQA+RIF+N E+EE+   L      LK 
Sbjct: 176 ESPIDTTRKLAQLVAQNVRTRERGQ-DPATRTFQAVRIFINRELEEVEAVLPQVMGRLKQ 234

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDV 300
           GG L V++FHSLEDR+VK+F    S      R   +     P        K + P  E+ 
Sbjct: 235 GGRLAVIAFHSLEDRIVKQFVKKYSQHPPLPRWAAVKEADLPLPPLKAVGKAIKPGVEET 294

Query: 301 AFNRRSRSAKLRAGMRT 317
           A N R+RSA LR   RT
Sbjct: 295 ASNPRARSAVLRVAERT 311


>gi|255015714|ref|ZP_05287840.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 2_1_7]
          Length = 305

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 108/306 (35%), Positives = 165/306 (53%), Gaps = 17/306 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           HVPV+L + +  L+  P  + +D TFG GG+SR   K       +   D+D  A      
Sbjct: 9   HVPVMLRESLEGLDIRPDGIYVDVTFGGGGHSREILKRLGSEGELYGFDQDADAEHNI-- 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  +F+  ++ F  L +++   G    VDG++ DLGVSS   D  DRGFSF+  G 
Sbjct: 67  ---PADPRFTFVRSNFRYLYNFMRYYGESGEVDGLLADLGVSSHHFDDKDRGFSFRFDGA 123

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+  +G +A+D+VN    + L  +  + GE K + ++A  +VK R++   +T  D 
Sbjct: 124 LDMRMNTRAGQTAADIVNNYTAEALADVFYLYGELKVSRKLASVLVKARETKKIETIGDF 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             +I+      K+       + FQALRI VN+E+  L + LRS  + L+ GG L+V+++H
Sbjct: 184 LEVIKPFT--GKDKEKKFLAQVFQALRIEVNDEMRALKEMLRSTLRVLRPGGRLVVITYH 241

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDRLVK F  + + +    +    +   P  F+ +  KV+VPT E+V  N RSRSAKL
Sbjct: 242 SLEDRLVKNFLKTGNFEGKCEQDFFGNVRSP--FRLVNNKVIVPTDEEVERNPRSRSAKL 299

Query: 312 RAGMRT 317
           R   + 
Sbjct: 300 RIAEKV 305


>gi|16759115|ref|NP_454732.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29140665|ref|NP_804007.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213052857|ref|ZP_03345735.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213426162|ref|ZP_03358912.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213585689|ref|ZP_03367515.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
 gi|213858022|ref|ZP_03384993.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|20139004|sp|Q8Z9H4|RSMH_SALTI RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|25302091|pir||AE0517 conserved hypothetical protein STY0140 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16501405|emb|CAD01277.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29136289|gb|AAO67856.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 313

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 121/312 (38%), Positives = 183/312 (58%), Gaps = 19/312 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++  Q
Sbjct: 6   KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAQ 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +FS+    FS L DYV ++     +DG++ DLGVSS Q+D  +RGFSF + G
Sbjct: 66  TI---NDPRFSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFMRDG 122

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + G SA++ +  A   D+  +L   GEE+ A RIAHAIV+R +  P   T++
Sbjct: 123 PLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIAHAIVERNREQPMTRTKE 182

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L +GG L ++SF
Sbjct: 183 LAEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLASGGRLSIISF 241

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305
           HSLEDR+VK+F   +S        +  + A          +++ K  ++P +++VA N R
Sbjct: 242 HSLEDRIVKRFMREQSRGPQVPAGLPMTEAQLKKLGGRELRALGK--LMPGEKEVAENPR 299

Query: 306 SRSAKLRAGMRT 317
           +RS+ LR   RT
Sbjct: 300 ARSSVLRIAERT 311


>gi|262831542|sp|Q07PU1|RSMH_RHOP5 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 332

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 152/326 (46%), Positives = 198/326 (60%), Gaps = 8/326 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQETM 78
           H+ VL  + +  L P  G V +DATFGAGGYSR+     G+ VI +DRD  A++ G + +
Sbjct: 9   HISVLGREAVDWLAPRDGGVYVDATFGAGGYSRAILTIDGTRVIGIDRDRTAIAGGFDLV 68

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
                + +L ++ FSQL +    +GV   DGVV D+GVSSMQ+D  +RGFSF+  GPLDM
Sbjct: 69  EQSDGRLTLVESRFSQLAEVCASQGVGQVDGVVMDVGVSSMQLDQAERGFSFRFDGPLDM 128

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RM   G SA++V+  A+  DL  I  I GEE+ +  +A AIV  R   P  TT+ L+ L+
Sbjct: 129 RMGHDGFSAAEVIAAASEADLANIFYIFGEERHSRAVARAIVAARAETPIVTTKALADLV 188

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
            K V+ SK   IHPATRSFQ LRIFVN E++EL   L +AE+ LK GG L+VVSFHSLED
Sbjct: 189 SKVVH-SKPGEIHPATRSFQGLRIFVNAELDELHLALTAAERVLKPGGRLVVVSFHSLED 247

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           R+VK FFA R       RH          F  +TK+ V P+ E+ A N R+RSAKLRAG 
Sbjct: 248 RIVKNFFAERGKASSGSRHRPEMAQQQPSFAILTKRPVTPSDEETAANPRARSAKLRAGE 307

Query: 316 RTVERSIEDDSFVHLPRLPTLSQFRG 341
           RT   +  +     LP  PTL+   G
Sbjct: 308 RTAAPAQPE---APLPHWPTLASVMG 330


>gi|115524112|ref|YP_781023.1| methyltransferase [Rhodopseudomonas palustris BisA53]
 gi|115518059|gb|ABJ06043.1| S-adenosyl-methyltransferase MraW [Rhodopseudomonas palustris
           BisA53]
          Length = 400

 Score =  362 bits (931), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 152/326 (46%), Positives = 198/326 (60%), Gaps = 8/326 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQETM 78
           H+ VL  + +  L P  G V +DATFGAGGYSR+     G+ VI +DRD  A++ G + +
Sbjct: 77  HISVLGREAVDWLAPRDGGVYVDATFGAGGYSRAILTIDGTRVIGIDRDRTAIAGGFDLV 136

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
                + +L ++ FSQL +    +GV   DGVV D+GVSSMQ+D  +RGFSF+  GPLDM
Sbjct: 137 EQSDGRLTLVESRFSQLAEVCASQGVGQVDGVVMDVGVSSMQLDQAERGFSFRFDGPLDM 196

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RM   G SA++V+  A+  DL  I  I GEE+ +  +A AIV  R   P  TT+ L+ L+
Sbjct: 197 RMGHDGFSAAEVIAAASEADLANIFYIFGEERHSRAVARAIVAARAETPIVTTKALADLV 256

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
            K V+ SK   IHPATRSFQ LRIFVN E++EL   L +AE+ LK GG L+VVSFHSLED
Sbjct: 257 SKVVH-SKPGEIHPATRSFQGLRIFVNAELDELHLALTAAERVLKPGGRLVVVSFHSLED 315

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           R+VK FFA R       RH          F  +TK+ V P+ E+ A N R+RSAKLRAG 
Sbjct: 316 RIVKNFFAERGKASSGSRHRPEMAQQQPSFAILTKRPVTPSDEETAANPRARSAKLRAGE 375

Query: 316 RTVERSIEDDSFVHLPRLPTLSQFRG 341
           RT   +  +     LP  PTL+   G
Sbjct: 376 RTAAPAQPE---APLPHWPTLASVMG 398


>gi|292572190|gb|ADE30105.1| S-adenosyl-methyltransferase MraW [Rickettsia prowazekii Rp22]
          Length = 306

 Score =  362 bits (931), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 125/303 (41%), Positives = 186/303 (61%), Gaps = 5/303 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETM 78
           H+PV+L +V+A+L P   +  LD TFGAGGYS +       +V +LDRDP  +   ++  
Sbjct: 5   HIPVMLSEVLAVLAPKGYESYLDCTFGAGGYSNAILNSCYCSVTSLDRDPNVIESVEKIK 64

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138
           +DY E+F+  +  F+     +  K  DG+V DLGVSSMQ+D  DRGFSF   GPLDMRMS
Sbjct: 65  QDYGERFNFIKTNFADSFRKLKHKKFDGIVMDLGVSSMQLDIADRGFSFLYDGPLDMRMS 124

Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198
             G SA + VN A+ +++  ++   G E  + RIA +IV+ R++A   +T+ L+ +++ +
Sbjct: 125 VQGFSAEEFVNTADEEEIADVIYKYGNESLSRRIAKSIVEYRKTARIDSTRKLAEIVRYS 184

Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258
           + F K  +I  AT++FQA+RI++NNE+ EL Q L + +  LK  G L+VVSFHSLEDR+V
Sbjct: 185 IGFRK-GKIDSATKTFQAIRIYINNELGELEQFLANVKNILKKDGRLVVVSFHSLEDRIV 243

Query: 259 KKFFASRSGKVMAVRHMIPSNAH---PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           K FF   S K +A                 + IT KV+ P+ +++  N R+RSAKLRA  
Sbjct: 244 KNFFKENSEKQVARSKYAKDEIKIDPNKWLKIITPKVLTPSSQEIRLNVRARSAKLRAAK 303

Query: 316 RTV 318
           + +
Sbjct: 304 KII 306


>gi|317046889|ref|YP_004114537.1| S-adenosyl-methyltransferase MraW [Pantoea sp. At-9b]
 gi|316948506|gb|ADU67981.1| S-adenosyl-methyltransferase MraW [Pantoea sp. At-9b]
          Length = 313

 Score =  362 bits (931), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 122/315 (38%), Positives = 174/315 (55%), Gaps = 15/315 (4%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAV 71
                H  VLL++ +  LN     + +D TFG GG+SR           ++A+DRDP A+
Sbjct: 2   QENFKHTTVLLDEAVNALNIREDGIYIDGTFGRGGHSRLILAQLGANGQLLAIDRDPQAI 61

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSF 127
           +   E       +FS+    FS L +YV ++G    +DGV+ DLGVSS Q+D  +RGFSF
Sbjct: 62  AAAAEI---KDSRFSIVHGPFSALAEYVSERGLNGKIDGVLLDLGVSSPQLDDAERGFSF 118

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
            + GPLDMRM  + G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P  
Sbjct: 119 MRDGPLDMRMDPTRGQSAAEWLLSAEEADIAFVLKTYGEERFAKRIARAIVERNREQPMT 178

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
            T++L+ +I       K+   HPATRSFQA+RI++N+E+EE+   L+ A   L  GG L 
Sbjct: 179 RTKELAEVIAAATPV-KDKFKHPATRSFQAIRIWINSELEEIDIALKGALSVLAPGGRLS 237

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFN 303
           V+SFHSLEDRLVK+F   +S        +  +          +  T   +VP   +VA N
Sbjct: 238 VISFHSLEDRLVKRFMRDQSRGPQVPAGIPMTETQLKALGGRELKTLGKMVPGDAEVADN 297

Query: 304 RRSRSAKLRAGMRTV 318
            R+RS+ LR   RT 
Sbjct: 298 PRARSSVLRIAERTA 312


>gi|92116827|ref|YP_576556.1| methyltransferase [Nitrobacter hamburgensis X14]
 gi|91799721|gb|ABE62096.1| methyltransferase [Nitrobacter hamburgensis X14]
          Length = 399

 Score =  362 bits (931), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 150/325 (46%), Positives = 201/325 (61%), Gaps = 7/325 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQETM 78
           HVPVL  + +A+L P  G V +DATFGAGGYSR+      + VI +DRD  A++ G   +
Sbjct: 75  HVPVLGREAVAMLAPRAGGVYVDATFGAGGYSRAILAVADTRVIGIDRDRSAIAGGFALV 134

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
            +   + +L +  FS L      +G   VDG+V D+GVSSMQ+D  DRGFSF+  GPLDM
Sbjct: 135 EESGGRLTLVEDRFSNLAAVCAAEGADVVDGIVMDVGVSSMQLDEADRGFSFRLDGPLDM 194

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RMS  G +A+DVV +A+  DL  I+ I GEE+++  +A AIV  R+ AP  TT+ L+ ++
Sbjct: 195 RMSGHGPTAADVVARASETDLANIIYIFGEERRSRAVARAIVAARRDAPVATTRALADIV 254

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
            K V  +K + IHPATR+FQALRIFVN E++EL   L +AE+ L+ GG L VVSFHSLED
Sbjct: 255 SKVV-RAKPHEIHPATRTFQALRIFVNEELDELIAALAAAERVLRPGGRLAVVSFHSLED 313

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           R+VK FFA R       RH          F  +T++ V   QE+V+ N R+RSAKLRA  
Sbjct: 314 RIVKNFFALRGKTGGGSRHRPEIERAAPSFAILTRRPVTAGQEEVSANPRARSAKLRAAE 373

Query: 316 RTVERSIEDDSFVHLPRLPTLSQFR 340
           RT   +  DD     P  P+L+   
Sbjct: 374 RTAAPATADDGES--PGWPSLANVM 396


>gi|15806866|ref|NP_295589.1| S-adenosyl-methyltransferase MraW [Deinococcus radiodurans R1]
 gi|20139273|sp|Q9RT99|RSMH_DEIRA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|6459646|gb|AAF11419.1|AE002026_7 conserved hypothetical protein [Deinococcus radiodurans R1]
          Length = 312

 Score =  362 bits (931), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 121/318 (38%), Positives = 173/318 (54%), Gaps = 24/318 (7%)

Query: 8   TMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRD 67
              S        HVPVL  +++  L PAPGKV +D T G  G++R     G+ V  +D+D
Sbjct: 15  QTESEASPPTFSHVPVLATEIVEALAPAPGKVFVDGTLGGAGHTRLLLGRGATVYGIDQD 74

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRG 124
           P+A+   ++          + Q  +  + + +P  G   VDG++ D+GVSS Q+D   RG
Sbjct: 75  PYALDRARQ---AALPGLHVLQGNYRDMAELLPAAGVTQVDGILLDIGVSSFQLDDAGRG 131

Query: 125 FSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           FS+    PLDMRMS SG SA+DVVN  +  +L  ++   GEE+ + RIA  IV+ R+ AP
Sbjct: 132 FSYHTEAPLDMRMSQSGESAADVVNDLDETELAALIYEYGEERHSRRIARFIVQAREKAP 191

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
            +TT  L+ +I++      +  IHPA R+FQALRI+VN+E+  L  GL +AE  L  GG 
Sbjct: 192 IETTVQLAEIIKRAYP-GFSKGIHPARRTFQALRIYVNDELGALRDGLSAAEGLLAPGGR 250

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           L V+SFHSLEDR+VK+F                      V   +TK+ +V  + +   N 
Sbjct: 251 LAVISFHSLEDRIVKRFLLGSD-----------------VLTPLTKRPIVAAESEQVDNP 293

Query: 305 RSRSAKLRAGMRTVERSI 322
           R+RSAKLR G R      
Sbjct: 294 RARSAKLRVGERAAAPEG 311


>gi|15604423|ref|NP_220941.1| S-adenosyl-methyltransferase MraW [Rickettsia prowazekii str.
           Madrid E]
 gi|8134811|sp|Q9ZCY2|RSMH_RICPR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|3861117|emb|CAA15017.1| unknown [Rickettsia prowazekii]
          Length = 306

 Score =  362 bits (931), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 126/303 (41%), Positives = 187/303 (61%), Gaps = 5/303 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETM 78
           H+PV+L +V+A+L P   +  LD TFGAGGYS +       +V +LDRDP  +   ++  
Sbjct: 5   HIPVMLSEVLAVLAPKGYESYLDCTFGAGGYSNAILNSCYCSVTSLDRDPNVIESVEKIK 64

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138
           +DY E+F+  +  F+     +  K  DG+V DLGVSSMQ+D  DRGFSF   GPLDMRMS
Sbjct: 65  QDYGERFNFIKTNFADSFRKLKHKKFDGIVMDLGVSSMQLDIADRGFSFLYDGPLDMRMS 124

Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198
             G SA + VN A+ +++  ++   G E  + RIA +IV+ R++A   +T+ L+ +++ +
Sbjct: 125 VQGFSAEEFVNTADEEEIADVIYKYGNESLSRRIAKSIVEYRKTARIDSTRKLAEIVRYS 184

Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258
           + F K  +I  AT++FQA+RI++NNE+EEL Q L + +  LK  G L+VVSFHSLEDR+V
Sbjct: 185 IGFRK-GKIDSATKTFQAIRIYINNELEELEQFLANVKNILKKDGRLVVVSFHSLEDRIV 243

Query: 259 KKFFASRSGKVMAVRHMIPSNAH---PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           K FF   S K +A                 + IT KV+ P+ +++  N R+RSAKLRA  
Sbjct: 244 KNFFKENSEKQVARSKYAKDEIKIDPNKWLKIITPKVLTPSSQEIRLNVRARSAKLRAAK 303

Query: 316 RTV 318
           + +
Sbjct: 304 KII 306


>gi|28897226|ref|NP_796831.1| S-adenosyl-methyltransferase MraW [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153839039|ref|ZP_01991706.1| S-adenosyl-methyltransferase MraW [Vibrio parahaemolyticus AQ3810]
 gi|260366064|ref|ZP_05778530.1| S-adenosyl-methyltransferase MraW [Vibrio parahaemolyticus K5030]
 gi|260878319|ref|ZP_05890674.1| S-adenosyl-methyltransferase MraW [Vibrio parahaemolyticus AN-5034]
 gi|260896408|ref|ZP_05904904.1| S-adenosyl-methyltransferase MraW [Vibrio parahaemolyticus
           Peru-466]
 gi|260899187|ref|ZP_05907582.1| S-adenosyl-methyltransferase MraW [Vibrio parahaemolyticus AQ4037]
 gi|33301414|sp|Q9AJH1|RSMH_VIBPA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|13537263|dbj|BAB40616.1| hypothetical protein [Vibrio parahaemolyticus]
 gi|28805435|dbj|BAC58715.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149747467|gb|EDM58415.1| S-adenosyl-methyltransferase MraW [Vibrio parahaemolyticus AQ3810]
 gi|308087564|gb|EFO37259.1| S-adenosyl-methyltransferase MraW [Vibrio parahaemolyticus
           Peru-466]
 gi|308093183|gb|EFO42878.1| S-adenosyl-methyltransferase MraW [Vibrio parahaemolyticus AN-5034]
 gi|308107133|gb|EFO44673.1| S-adenosyl-methyltransferase MraW [Vibrio parahaemolyticus AQ4037]
 gi|308111365|gb|EFO48905.1| S-adenosyl-methyltransferase MraW [Vibrio parahaemolyticus K5030]
          Length = 316

 Score =  362 bits (931), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 116/316 (36%), Positives = 171/316 (54%), Gaps = 18/316 (5%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72
               H+ VLL + I  L   P  + +D TFG GG+SR+          + ++DRDP A++
Sbjct: 3   ETFQHISVLLNESIDGLAIKPDGIYIDGTFGRGGHSRTILSKLGPNGRLYSIDRDPQAIA 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128
              +       +F++    FS +  Y  +      VDGV+ DLGVSS Q+D  +RGFSF 
Sbjct: 63  EAGKI---DDPRFTIIHGPFSGMAQYAEEYDLVGKVDGVLLDLGVSSPQLDDAERGFSFM 119

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---P 184
           K GPLDMRM   SGI  S  + +A++ D+T ++   GE+K A RIA AIV+ R++    P
Sbjct: 120 KDGPLDMRMDPTSGIPVSQWLMEADLDDITWVIREFGEDKHARRIARAIVEYRENEENEP 179

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
              T  L+ LI +    S   + HPATR+FQA RI++N+E+EE+   L+ A + L   G 
Sbjct: 180 MVRTGQLAKLISEAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAARILAPEGR 239

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT----KKVVVPTQEDV 300
           L V+SFHSLEDR+VK+F    S        +  + A      S       K + P+++++
Sbjct: 240 LSVISFHSLEDRMVKRFIRKESKGPEVPHGIPLTEAQIKELGSANMKTVGKAIKPSKQEI 299

Query: 301 AFNRRSRSAKLRAGMR 316
             N RSRS+ LR   +
Sbjct: 300 DMNPRSRSSVLRIAEK 315


>gi|313203980|ref|YP_004042637.1| s-adenosyL-methyltransferase mraw [Paludibacter propionicigenes
           WB4]
 gi|312443296|gb|ADQ79652.1| S-adenosyl-methyltransferase MraW [Paludibacter propionicigenes
           WB4]
          Length = 319

 Score =  362 bits (931), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 105/322 (32%), Positives = 166/322 (51%), Gaps = 16/322 (4%)

Query: 1   MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---M 57
           ++ K+   +S++    I  H+P LL++ I  LN  P  V +D TFG GG+SR   K    
Sbjct: 3   IKKKNIDAVSTSGAEEIAYHIPALLDETITGLNIKPNGVYVDVTFGGGGHSREILKHLGA 62

Query: 58  GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVS 114
              ++  D+D  A+    +       +F   ++ F  +++++   G   VDG++ DLGVS
Sbjct: 63  DGKLLGFDQDEDAIKNTID-----DPRFIFVRSNFRYMKNFLKYHGIDKVDGILADLGVS 117

Query: 115 SMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIA 173
           S   D  +RGFSF+  G LDMRM+  S  +A+ ++N    + L  +  + GE   + +IA
Sbjct: 118 SHHFDEAERGFSFRFDGALDMRMNTKSSFTAAALLNTYTEEQLADVFYLYGELHNSRKIA 177

Query: 174 HAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLR 233
             IV  R SAPF        +++   +F +        R FQALRI VN E++ L   L 
Sbjct: 178 RTIVAARNSAPFDRIFPFIEVLKP--FFGREKEKKDMARVFQALRIEVNKEMDVLKALLD 235

Query: 234 SAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV 293
            + + L   G L V+++HSLEDRLVK F  S + +    +    +   P   +++  KV+
Sbjct: 236 QSIEVLNPQGRLAVLTYHSLEDRLVKNFIRSGNFEGKLEKDFYGNILAP--LKAVNTKVI 293

Query: 294 VPTQEDVAFNRRSRSAKLRAGM 315
           V  + +VA N R+RSAKLR   
Sbjct: 294 VADEAEVARNPRARSAKLRVAE 315


>gi|20139121|sp|Q9AJG9|RSMH_VIBPR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|13537266|dbj|BAB40618.1| hypothetical protein [Vibrio proteolyticus]
          Length = 316

 Score =  362 bits (931), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 118/312 (37%), Positives = 171/312 (54%), Gaps = 18/312 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H+ VLL + I  L   P  + +D TFG GG+SR+          + ++DRDP A++  + 
Sbjct: 7   HISVLLHESIEGLAIKPDGIYIDGTFGRGGHSRTILSQLGENGRLYSIDRDPQAIAEAKT 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  +F++    FS +  Y    G    VDGV+FDLGVSS Q+D  +RGFSF K GP
Sbjct: 67  I---DDPRFTIVHGPFSGIAHYAKQHGLAGKVDGVLFDLGVSSPQLDDAERGFSFMKDGP 123

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---PFQTT 188
           LDMRM   SGI  S  + +A++ D+T ++   GE+K A RIA AIV  R++    P + T
Sbjct: 124 LDMRMDPTSGIPVSQWLMEADLDDITWVIREFGEDKHARRIAKAIVAYRENEENEPLKRT 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ LI      S   + HPATR+FQA RI++N+E+EE+   L+ A + L   G L V+
Sbjct: 184 SQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAAEILAPQGRLSVI 243

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT----KKVVVPTQEDVAFNR 304
           SFHSLEDR+VK+F    S        +  + A      S       K + P+++++  N 
Sbjct: 244 SFHSLEDRMVKRFIRKESQGPQVPHGIPMTEAQIQALGSANMKAIGKAIKPSKQEIELNP 303

Query: 305 RSRSAKLRAGMR 316
           RSRS+ LR   +
Sbjct: 304 RSRSSVLRIAEK 315


>gi|313893629|ref|ZP_07827197.1| S-adenosyl-methyltransferase MraW [Veillonella sp. oral taxon 158
           str. F0412]
 gi|313441773|gb|EFR60197.1| S-adenosyl-methyltransferase MraW [Veillonella sp. oral taxon 158
           str. F0412]
          Length = 310

 Score =  362 bits (931), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 104/307 (33%), Positives = 164/307 (53%), Gaps = 10/307 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS---FCKMGSNVIALDRDPFAVSCGQ 75
           +H  VLL + +  +   P  + +D T G  G++ +          +I LD+D  A+S  +
Sbjct: 4   NHTSVLLRETVDSVVTNPKGIYVDCTLGGAGHAHAVGKMLDPEGMIIGLDQDEDALSVAR 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + + D   Q       FS L++ + + G   VDG +FDLGVSS Q+D  +RGFS+   GP
Sbjct: 64  QRLSDLNCQVLTIPTNFSNLKEALQNAGIYEVDGFIFDLGVSSYQLDTPERGFSYMNDGP 123

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM     ++A ++VN+ + + L +I+   GEE+ A RI   IV  RQ     TT +L
Sbjct: 124 LDMRMDKDAPLTAEEIVNEYDAEQLLQIIRDYGEERWAKRIVEFIVNARQENRITTTGEL 183

Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I++ +    + +  HPA R+FQA+RI VN E+  L      A   LK  G + V++F
Sbjct: 184 VRIIKQAIPAKARQDGPHPAKRTFQAIRIEVNRELAILHDSFVDAVSMLKPKGKIGVITF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+ K+ F   S   +      + +  H AV ++   K + P+  ++  N R+RSA
Sbjct: 244 HSLEDRITKQTFKELSTACICPPELPMCACNHKAVVKAKN-KAIEPSAGEIEVNPRARSA 302

Query: 310 KLRAGMR 316
           KLR  ++
Sbjct: 303 KLRVAIK 309


>gi|297717878|gb|ADI50082.1| S-adenosyl-methyltransferase MraW [Candidatus Odyssella
           thessalonicensis L13]
          Length = 314

 Score =  362 bits (931), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 133/304 (43%), Positives = 189/304 (62%), Gaps = 7/304 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQET 77
            H+PVLL+++   L    G + +DATFG GGY+R+  +     VIA+DRDP A+   ++ 
Sbjct: 1   MHIPVLLKEMQEALAIRDGALYIDATFGGGGYTRAILEQANCQVIAVDRDPEAIQRAEQL 60

Query: 78  MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
              Y ++  +FQ  FS L   V     + VDGVVFD GVSS QID  +RGFSF+  GPLD
Sbjct: 61  KAQYPDRLFVFQGVFSDLPSIVEKVPVEKVDGVVFDFGVSSYQIDTPERGFSFRFEGPLD 120

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRMS  G SA+D+VN  + +DL  ++   GEE ++ RIA AIV+ R+  P QTT +L++L
Sbjct: 121 MRMSGEGESAADIVNTYSEEDLANVIYTYGEEYRSRRIARAIVELRKVKPIQTTLELANL 180

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           I+  V   + +  HPAT +FQALRI VNNE+ E+ +GL+ AE  L   G L+ V+FHSLE
Sbjct: 181 IKSRV-GGRPDAQHPATLTFQALRIKVNNELIEIERGLKFAEDFLSTDGRLVAVTFHSLE 239

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNA--HPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           DR+VK F   +S +      ++P      P  F  +  K + P++ +++ N RSRSA+LR
Sbjct: 240 DRVVKSFLRQKSVRKQKQSRLLPGEKVPSPPSFHDLYPKGIAPSETEISANPRSRSARLR 299

Query: 313 AGMR 316
           A +R
Sbjct: 300 AAVR 303


>gi|229514038|ref|ZP_04403500.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae TMA 21]
 gi|229349219|gb|EEO14176.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae TMA 21]
          Length = 316

 Score =  362 bits (931), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 119/323 (36%), Positives = 173/323 (53%), Gaps = 23/323 (7%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           M+++       H+ VLL + I  L   P  + +D TFG GG+SR+          + ++D
Sbjct: 1   MTASFQ-----HISVLLNESIEGLAIKPDGIYIDGTFGRGGHSRTILAQLGPEGRLYSID 55

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCG 121
           RDP A++  Q+       +F++    FS + +Y         VDGV+FDLGVSS Q+D  
Sbjct: 56  RDPQAIAEAQKI---DDPRFTIVHGPFSGIAEYAQRYDLVGKVDGVLFDLGVSSPQLDDA 112

Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF K GPLDMRM   SG+  S  + QA++ D+T ++   GE+K A RIA AIV+ R
Sbjct: 113 ERGFSFMKDGPLDMRMDPTSGMPVSAWLAQADLDDITWVIREFGEDKHARRIAKAIVEYR 172

Query: 181 QSA---PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
           ++    P   T  L+ LI      S   + HPATR+FQA RI++N+E+EE+   L  A  
Sbjct: 173 ENELNEPLTRTSQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALCGASD 232

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSIT-KKVV 293
            L   G L V+SFHSLEDR+VK+F    S        +  +          +  T  K +
Sbjct: 233 ILAPQGRLSVISFHSLEDRMVKRFMRKESQGPQVPHGIPLTQDQIRALGSAKMKTVGKAL 292

Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316
            P+ ++V  N RSRS+ LR   +
Sbjct: 293 KPSDQEVELNPRSRSSVLRVAEK 315


>gi|83592294|ref|YP_426046.1| s-adenosyl-methyltransferase MraW [Rhodospirillum rubrum ATCC
           11170]
 gi|123753270|sp|Q2RVT6|RSMH_RHORT RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|83575208|gb|ABC21759.1| methyltransferase [Rhodospirillum rubrum ATCC 11170]
          Length = 326

 Score =  362 bits (931), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 137/318 (43%), Positives = 195/318 (61%), Gaps = 11/318 (3%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSC 73
           + +  H PV+L++V++ L P    + +D TFG GGYSR   +     VIA+DRDP A   
Sbjct: 2   NALTPHFPVMLDEVLSALEPHADGLYVDGTFGNGGYSRGLLERADCRVIAIDRDPAARVR 61

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130
           G     ++  +F+L    F  ++  +  +G+   DGV  DLGVSSMQ+D  +RGFSFQK 
Sbjct: 62  GAALEAEFPGRFTLLSGCFGDMEQLLAAEGISRIDGVALDLGVSSMQLDQAERGFSFQKD 121

Query: 131 GPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           GPLDMRM   G +A+D+VN  +   L  IL   GEE+++  +AHAIV+RR   PF  T D
Sbjct: 122 GPLDMRMGQQGQTAADLVNTLDEDRLADILYHYGEERKSRWVAHAIVERRAETPFSRTAD 181

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+++I+  V  S++  I PATRSFQALRI VN+E+ EL + L ++E+ L+AGG L+VV+F
Sbjct: 182 LATVIRGVVRKSRDG-IDPATRSFQALRIVVNDELGELERALGASERLLRAGGRLVVVAF 240

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIP------SNAHPAVFQSITKKVVVPTQEDVAFNR 304
           HSLEDR+VK F   R G+   V   +P      +   P  FQ+++++ V P   +   N 
Sbjct: 241 HSLEDRIVKAFVRQRCGESEGVSRHLPQASNAGAGNPPPSFQAVSRRAVKPLDAETRVNP 300

Query: 305 RSRSAKLRAGMRTVERSI 322
           RSRSA+LRA  RT   + 
Sbjct: 301 RSRSARLRAVERTEFPAW 318


>gi|121602081|ref|YP_989236.1| S-adenosyl-methyltransferase MraW [Bartonella bacilliformis KC583]
 gi|263445982|sp|A1UTD3|RSMH_BARBK RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|120614258|gb|ABM44859.1| S-adenosyl-methyltransferase MraW [Bartonella bacilliformis KC583]
          Length = 331

 Score =  362 bits (931), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 158/321 (49%), Positives = 213/321 (66%), Gaps = 3/321 (0%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+PVLLE V+A L P  G  ++D TFGAGGY+R+    G+NV ALDRDP A+  G+  + 
Sbjct: 11  HIPVLLEPVLAGLAPLSGATVIDGTFGAGGYTRALLNAGANVTALDRDPHAIREGKPLVD 70

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
            +  +  L Q  FSQL   + +  VD V+ D+GVSSMQ+D  +RGFSFQK GPLDMRM+ 
Sbjct: 71  QFFPRLRLVQTEFSQLDRVIEE-KVDAVILDIGVSSMQLDEAERGFSFQKDGPLDMRMAQ 129

Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199
           +G+SASDVVN   + DL +I  ILGEE+ +SRIA  I KRR+  PF  T+DL+  I+  +
Sbjct: 130 TGLSASDVVNHLKIDDLIQIFRILGEERHSSRIAKMIEKRRRIRPFLRTRDLAHEIEVLI 189

Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259
                +RIHPATR FQALRI+VN+E+ EL +GL +AE+ LKAGG L VVSFHSLEDR+VK
Sbjct: 190 GRKPGDRIHPATRVFQALRIYVNDELNELTRGLFAAERVLKAGGRLGVVSFHSLEDRIVK 249

Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319
           KFF+  SG     R++    + PA F  + K     ++E++  N R+RSA+LR G+RT  
Sbjct: 250 KFFSFCSGNRKGSRYLPEVESAPATFFPLFKGGKTASEEELQKNPRARSARLRIGIRTQV 309

Query: 320 RSIEDDSFVHLPRLPTLSQFR 340
            ++E D  + L  L  ++ F 
Sbjct: 310 DAMEAD--MKLFGLKEIANFE 328


>gi|91776629|ref|YP_546385.1| methyltransferase [Methylobacillus flagellatus KT]
 gi|123078758|sp|Q1GYZ3|RSMH_METFK RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|91710616|gb|ABE50544.1| methyltransferase [Methylobacillus flagellatus KT]
          Length = 321

 Score =  362 bits (931), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 122/323 (37%), Positives = 175/323 (54%), Gaps = 17/323 (5%)

Query: 9   MSSAIHH----TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NV 61
           MS+ I H     +  HV VLLE+ +  L+  P  V +D TFG GG+SR   +       +
Sbjct: 1   MSAGISHVPAAQVSQHVTVLLEEAVEALSIKPDGVYVDGTFGRGGHSRKILEKLGAQGRL 60

Query: 62  IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQI 118
           +ALDRD  A+   Q        +F +  + F+ +   +       VDGV+ DLG+SS QI
Sbjct: 61  VALDRDLAAIQAAQ---GIQDARFKIVHSHFAAMAQVLASLNIQQVDGVLLDLGISSPQI 117

Query: 119 DCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177
           D G+RGFSF+  GPLDMRM  S G +A++ +  A  ++LTR++   GEE+ A +IA AIV
Sbjct: 118 DEGERGFSFRFDGPLDMRMDQSRGQTAAEFIATATEQELTRVIKEYGEERFAKQIARAIV 177

Query: 178 KRRQSAP-FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236
            +R       TT  L+ ++   V   +  +  PATR+FQALRIF+N E+EEL+  L    
Sbjct: 178 AQRAGGMDISTTGQLAKIVAGAVPKVEPGQ-DPATRTFQALRIFINQELEELSLTLPQCL 236

Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI-TKKVVVP 295
             L   G L V+SFHSLEDR+VK+F      +     H     +     + +   + V P
Sbjct: 237 SLLAPQGRLAVISFHSLEDRIVKRFIRGEQDRDNLPAHFPVRASDLPQPRLVAIGRAVRP 296

Query: 296 TQEDVAFNRRSRSAKLRAGMRTV 318
           ++++V  N RSRSA LR   RT 
Sbjct: 297 SEDEVRRNPRSRSAVLRVAERTA 319


>gi|33151483|ref|NP_872836.1| S-adenosyl-methyltransferase MraW [Haemophilus ducreyi 35000HP]
 gi|42559455|sp|Q7VP62|RSMH_HAEDU RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|33147703|gb|AAP95225.1| S-adenosyl-methyltransferase MraW [Haemophilus ducreyi 35000HP]
          Length = 313

 Score =  362 bits (931), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 115/316 (36%), Positives = 177/316 (56%), Gaps = 16/316 (5%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69
           ++ T   H+ VLL + +  L   P  + +D TFG GG+SR           +IA+DRDP 
Sbjct: 1   MNETDHKHITVLLHEAVDGLAIKPNGIYIDGTFGRGGHSRLILSRLATNGRLIAIDRDPC 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGF 125
           A++           +F +    FS + +     G    +DG++ DLGVSS Q+D  +RGF
Sbjct: 61  AIAEANTI---SDARFQIIHTAFSAIPEVCESLGLMGKIDGILLDLGVSSPQLDDAERGF 117

Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-- 182
           SF + GPLDMRM  + G+SA++ + Q +++DL  +L   GEE+ A RIA A+V   ++  
Sbjct: 118 SFMRDGPLDMRMDTTKGLSAAEWLAQVSIEDLAWVLKTFGEERFAKRIAQAVVSYNKTNS 177

Query: 183 APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
                T  L+ +I   V F K+   HPATRSFQA+RIF+N E++EL + L +A + L   
Sbjct: 178 EKITRTLQLAKIIADAVPF-KDKHKHPATRSFQAIRIFINRELDELEKALTNALRVLAPE 236

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGK--VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300
           G L ++SFHSLEDR+VK+F    S    V     ++ +  +  +  +I  K ++P++ ++
Sbjct: 237 GRLSIISFHSLEDRMVKQFMKKNSKGEVVPKGLPILEAELNKNIPLNIIGKAIMPSEAEI 296

Query: 301 AFNRRSRSAKLRAGMR 316
             N RSRSA LR   +
Sbjct: 297 VANARSRSAVLRIAAK 312


>gi|312143945|ref|YP_003995391.1| S-adenosyl-methyltransferase MraW [Halanaerobium sp. 'sapolanicus']
 gi|311904596|gb|ADQ15037.1| S-adenosyl-methyltransferase MraW [Halanaerobium sp. 'sapolanicus']
          Length = 310

 Score =  362 bits (931), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 112/308 (36%), Positives = 166/308 (53%), Gaps = 10/308 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
           +H  VLL + I  LN     V LD T G GG+S    K       +IA+DRD  A+   +
Sbjct: 4   EHKAVLLNEAIKYLNIKEDGVYLDGTLGRGGHSFEILKKLSEHGKLIAIDRDIEAIKAVR 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E  +       L  A F      +       VDG++FDLGVSS Q+D  +RGFS+QK GP
Sbjct: 64  EK-QPENSSLILEHANFLDFDKVLNKHSISKVDGMLFDLGVSSPQLDNAERGFSYQKDGP 122

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+ +  ++A+D+VN  + K+L +I+   GEE  A RIA  IV+ R+    + T +L
Sbjct: 123 LDMRMNQNQALTAADIVNNYSQKELIKIISDYGEENWAVRIAEFIVEARKKEEIERTSEL 182

Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+  V   ++    HPA R+FQALRI  N+E+ +L + ++ +   L  GG ++++SF
Sbjct: 183 VEIIKAAVPKGARRGGGHPARRTFQALRIATNDELNQLQKLIKKSVSFLNKGGRIVIISF 242

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  F   +          I      +  + IT+  +   + +V  N R+RSA
Sbjct: 243 HSLEDRIVKHSFRELAKDCTCPPDFPICVCDKVSHVKVITRSPIEAKKNEVDSNPRARSA 302

Query: 310 KLRAGMRT 317
           KLRA  + 
Sbjct: 303 KLRAAEKI 310


>gi|313901510|ref|ZP_07834958.1| S-adenosyl-methyltransferase MraW [Thermaerobacter subterraneus DSM
           13965]
 gi|313468223|gb|EFR63689.1| S-adenosyl-methyltransferase MraW [Thermaerobacter subterraneus DSM
           13965]
          Length = 383

 Score =  362 bits (931), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 123/307 (40%), Positives = 172/307 (56%), Gaps = 15/307 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H+PVLL +V+A L P  G   +D T GAGG++ +  +       ++ +DRDP A++    
Sbjct: 66  HIPVLLAEVLAYLQPERGGRFVDGTVGAGGHAAAILEAAGEAGRLLGIDRDPQALALAAA 125

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  + ++  L    F  L  ++   G   VDG++ DLGVSSMQ+D   RGFS+Q   PL
Sbjct: 126 RLAPFGDRVRLVHGDFRDLGRHLAAAGWKAVDGILLDLGVSSMQLDDPARGFSYQVDAPL 185

Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  S   +A+D+VN A+   L R +   GEE+ A RIA  IV  RQ  P  TT  L 
Sbjct: 186 DMRMDPSQPVTAADLVNTASRDQLARWIAEYGEERWAGRIADFIVAARQRRPITTTLQLV 245

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  V    +    HPA R+FQALRI VNNE+E L   L+ A   L+ GG L+V+SFH
Sbjct: 246 EVIKDAVPARARRRGGHPARRTFQALRIAVNNELEGLEAFLQEAAGYLRPGGRLVVISFH 305

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR VK+ F + +   +  +         A F+ +T++ V P  E+   N R+RSAKL
Sbjct: 306 SLEDRAVKRAFRALAAPQVGGKEG-------AAFRILTRRPVTPGDEEERRNPRARSAKL 358

Query: 312 RAGMRTV 318
           RA  R  
Sbjct: 359 RALERVA 365


>gi|293366856|ref|ZP_06613532.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Staphylococcus epidermidis M23864:W2(grey)]
 gi|291319157|gb|EFE59527.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Staphylococcus epidermidis M23864:W2(grey)]
          Length = 304

 Score =  362 bits (931), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 99/301 (32%), Positives = 159/301 (52%), Gaps = 9/301 (2%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRD 80
           +L + I  LN     V +D T G  G++            +IA+D+D  A+   +E +++
Sbjct: 1   MLNETIDYLNIKEDGVYVDCTLGGAGHALYLLNQLNDKGRLIAIDQDLTAIENAKEVLKE 60

Query: 81  YKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
           +  + +     F +L + + +   + VDG+ +DLGVSS Q+D  +RGFS+     LDMRM
Sbjct: 61  HLHKVTFVHNNFRELTNILNELEIEKVDGIYYDLGVSSPQLDVPERGFSYHNDAKLDMRM 120

Query: 138 SCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
             +  +SA +VVNQ + + L RI    GEEK + +IA  I   R+  P +TT +L  +I+
Sbjct: 121 DQTQSLSAYEVVNQWSYEALVRIFFRYGEEKFSKQIARRIEAHREQQPIETTLELVDVIK 180

Query: 197 KTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           + +    +    HPA R FQA+RI VN+E+      +  A + +K GG + V++FHSLED
Sbjct: 181 EGIPAKARRKGGHPAKRVFQAIRIAVNDELSAFEDSVEQAIECVKVGGRISVITFHSLED 240

Query: 256 RLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           RL K+ F          R   +   A+    + + +K +  T +D+  N R+RSAKLR  
Sbjct: 241 RLCKQIFQEFEKGPDVPRGLPVIPEAYTPKLKRVNRKPITATDDDLNDNNRARSAKLRVA 300

Query: 315 M 315
            
Sbjct: 301 E 301


>gi|269960233|ref|ZP_06174608.1| S-adenosyl-methyltransferase mraW [Vibrio harveyi 1DA3]
 gi|269835040|gb|EEZ89124.1| S-adenosyl-methyltransferase mraW [Vibrio harveyi 1DA3]
          Length = 316

 Score =  362 bits (931), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 119/316 (37%), Positives = 169/316 (53%), Gaps = 18/316 (5%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72
               H+ VLL + I  L   P  + +D TFG GG+SR+          + ++DRDP A++
Sbjct: 3   ETFQHISVLLNESIDGLAIKPDGIYIDGTFGRGGHSRTILSKLGENGRLYSIDRDPQAIA 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128
              E  +    +F++    FS +  Y  D G    VDGV+ DLGVSS Q+D  +RGFSF 
Sbjct: 63  ---EAAKIDDPRFTIIHGPFSGMAQYAEDYGLVGKVDGVLLDLGVSSPQLDDAERGFSFM 119

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ---SAP 184
           K GPLDMRM   SGI  S  + +A++ D+T ++   GE+K A RIA AIV  R+   + P
Sbjct: 120 KDGPLDMRMDPTSGIPVSQWLMEADLDDITWVIREFGEDKHARRIAKAIVAYREDEENEP 179

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
              T  L+ LI      S   + HPATR+FQA RI++N+E+EE+   L+ A   L   G 
Sbjct: 180 MVRTGQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAASILAPEGR 239

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV----VPTQEDV 300
           L V+SFHSLEDR+VK+F    S        +  +        S   K +     PT++++
Sbjct: 240 LSVISFHSLEDRMVKRFIRKESKGPEVPHGIPMTEEQIRALGSANMKPIGKANKPTKQEI 299

Query: 301 AFNRRSRSAKLRAGMR 316
             N RSRS+ LR   +
Sbjct: 300 DMNPRSRSSVLRIAEK 315


>gi|15601999|ref|NP_245071.1| S-adenosyl-methyltransferase MraW [Pasteurella multocida subsp.
           multocida str. Pm70]
 gi|20139143|sp|Q9CPB4|RSMH_PASMU RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|12720349|gb|AAK02218.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 321

 Score =  362 bits (931), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 122/324 (37%), Positives = 174/324 (53%), Gaps = 20/324 (6%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M+   H +   H+ VLL + +A L      + +D TFG GG+SR           +IA+D
Sbjct: 1   MNDKDHFSSPAHITVLLNEAVAGLALKEKGIYIDGTFGRGGHSRLILSRLADNGRLIAID 60

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCG 121
           RDP A++  +        +F +   +FS +            VDG++ DLGVSS Q+D  
Sbjct: 61  RDPRAIAEAKTI---QDPRFHIEHRSFSDIPRICERLNLVGKVDGILLDLGVSSPQLDEA 117

Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF K GPLDMRM  + G+SAS+ + Q + +DL  +L   GEE+ A RIA AIV   
Sbjct: 118 ERGFSFMKDGPLDMRMDTTQGLSASEWLQQVSEQDLAWVLKTFGEERFAKRIAQAIVNYN 177

Query: 181 QS------APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234
           +        P   T  L+ LI   V F K+   HPATRSFQA+RIF+N E++EL   L+S
Sbjct: 178 KQALQHGTEPLSRTLQLAELIANAVPF-KDKHKHPATRSFQAIRIFINAELDELESVLKS 236

Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ--SITKKV 292
           A + L   G L ++SFHSLEDR+VK F   +S      + +   +      Q   +  K 
Sbjct: 237 AVQVLAPQGRLAIISFHSLEDRMVKHFMRKQSKGEDIPKGLPLRDDQIQRTQTLKVIGKA 296

Query: 293 VVPTQEDVAFNRRSRSAKLRAGMR 316
           ++PT+++   N RSRSA LR   +
Sbjct: 297 IMPTEQEQQQNPRSRSAVLRVAEK 320


>gi|218886065|ref|YP_002435386.1| S-adenosyl-methyltransferase MraW [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|263446322|sp|B8DP86|RSMH_DESVM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|218757019|gb|ACL07918.1| S-adenosyl-methyltransferase MraW [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 361

 Score =  362 bits (930), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 123/323 (38%), Positives = 173/323 (53%), Gaps = 11/323 (3%)

Query: 8   TMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIAL 64
           ++S+        HVPVLL++V+  L P PG   LD T G GG+S +  +       +  L
Sbjct: 14  SVSTEGARAATLHVPVLLDEVLEALAPRPGGRYLDGTVGLGGHSAAIMERIGPDGELCCL 73

Query: 65  DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCG 121
           DRD  A+   ++ +  +  +   F   ++  +  +   G   VDG + D+GVSSMQID  
Sbjct: 74  DRDTTALGLARQRLAPWGGRVHFFHTRYADFEAALDQLGWDKVDGALIDIGVSSMQIDMA 133

Query: 122 DRGFSFQKSGPLDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
           DRGFSF   GPLDMRM   G    AS +VN+A V  L  I+   GE+  A RIA AIV  
Sbjct: 134 DRGFSFHADGPLDMRMDRDGDEAPASRLVNRATVDVLKDIILRYGEDPMAGRIARAIVDA 193

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
           R + P +TT  L++++ +         +R HPATR+FQALR+ VN+E+ +L + L     
Sbjct: 194 RAAGPIETTAQLAAIVDRAYPAKWRATSRNHPATRTFQALRMAVNDELGQLERFLDRILD 253

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPT 296
            L  GG L V++FHSLEDR+VK      S   +  R +      H A    +T+K V  T
Sbjct: 254 RLNPGGRLAVITFHSLEDRIVKHRLRDESQGCVCPRSVSRCECGHKARVDVLTRKPVTAT 313

Query: 297 QEDVAFNRRSRSAKLRAGMRTVE 319
             ++A N R+ SAKLRA  R  E
Sbjct: 314 DAELARNSRASSAKLRAAQRLAE 336


>gi|241760229|ref|ZP_04758325.1| S-adenosyl-methyltransferase MraW [Neisseria flavescens SK114]
 gi|241319340|gb|EER55805.1| S-adenosyl-methyltransferase MraW [Neisseria flavescens SK114]
          Length = 320

 Score =  362 bits (930), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 112/317 (35%), Positives = 173/317 (54%), Gaps = 15/317 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           MS   ++    HV VLL + +  L      + +D TFG GG+SR           ++  D
Sbjct: 1   MSKVENYQ---HVTVLLHEAVDALAIRKDGIYVDGTFGRGGHSRLILSRLSEQGRLVVFD 57

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGD 122
           +DP A++   E +    ++ S+    F   Q  + + G+D   G +FDLG+SS QID G 
Sbjct: 58  KDPEAIAVANE-LAKQDKRVSVVHNGFETFQTALDELGIDKIDGALFDLGISSPQIDDGS 116

Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF+   PLDMRM  + G+SA++ +  A+ +DL  ++   GEE+ + +IA AIV +R+
Sbjct: 117 RGFSFRFDAPLDMRMDPTRGMSAAEWIATASEQDLHEVIKNYGEERFSRQIARAIVAQRE 176

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            +P  TT+ L+ L+ + V   +  +  PATR+FQA+RIF+N E+EE+   L      LK 
Sbjct: 177 ESPIDTTRKLAQLVAQNVRTRERGQ-DPATRTFQAVRIFINRELEEVEAVLPQVAGRLKE 235

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQED 299
           GG L V++FHSLEDR+VK+F    S      R  +   ++      +++  K + P   +
Sbjct: 236 GGRLAVIAFHSLEDRIVKQFIKKYSQHAPLPRWAVVKEADLPQPPLKAV-GKAIKPGSTE 294

Query: 300 VAFNRRSRSAKLRAGMR 316
              N R+RSA LR   R
Sbjct: 295 TEANPRARSAVLRVAER 311


>gi|58617225|ref|YP_196424.1| S-adenosyl-methyltransferase MraW [Ehrlichia ruminantium str.
           Gardel]
 gi|68565410|sp|Q5FH93|RSMH_EHRRG RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|58416837|emb|CAI27950.1| S-adenosyl-methyltransferase mraW [Ehrlichia ruminantium str.
           Gardel]
          Length = 301

 Score =  362 bits (930), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 129/303 (42%), Positives = 187/303 (61%), Gaps = 11/303 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQETM 78
           H PVLL++++ +L+P  G + +DATFG+GGYSR+        V A+D+D +  +  ++  
Sbjct: 3   HTPVLLKEMLDILSPQNGGIYVDATFGSGGYSRAILNSADCQVYAIDQDEYTYTFYEKLS 62

Query: 79  RDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
            D+  +   F   FS++Q  + +   K VDGVVFD+GVSSMQ++   RGFSF K+GPLDM
Sbjct: 63  HDFPNRIHFFINKFSKIQQILNNVQIKKVDGVVFDIGVSSMQLEDASRGFSFSKNGPLDM 122

Query: 136 RMSCS--GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           RMS S  G+ A   VN  +  ++  ++   G EK + +IA AIV  R      TT +L+S
Sbjct: 123 RMSTSLSGVDARMFVNTVSEVEIANVIYQYGGEKYSRKIARAIVNARNKNMINTTGELAS 182

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           +I+  V  SKN+ I PATR+FQA+RI+VN E+EEL +G+  A   L  GG +IV+SFHSL
Sbjct: 183 IIRSVVSRSKNHSIDPATRTFQAIRIWVNKELEELEKGIACAANILNQGGKIIVISFHSL 242

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           EDR+VK  F      ++     +        FQ I KK++ PT E++  N R+RSAKLRA
Sbjct: 243 EDRIVKVMFK-----LLCDGKSVNLLNLGLGFQLINKKIIRPTAEEIHSNPRARSAKLRA 297

Query: 314 GMR 316
            ++
Sbjct: 298 ILK 300


>gi|225077130|ref|ZP_03720329.1| hypothetical protein NEIFLAOT_02185 [Neisseria flavescens
           NRL30031/H210]
 gi|224951541|gb|EEG32750.1| hypothetical protein NEIFLAOT_02185 [Neisseria flavescens
           NRL30031/H210]
          Length = 320

 Score =  362 bits (930), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 112/317 (35%), Positives = 172/317 (54%), Gaps = 15/317 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           MS   ++    HV VLL + +  L      + +D TFG GG+SR           ++  D
Sbjct: 1   MSKVENYQ---HVTVLLHEAVDALAIREDGIYVDGTFGRGGHSRLILSRLGEQGRLVVFD 57

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGD 122
           +DP A++   E +    ++ S+    F   Q  + + G+D   G +FDLG+SS QID G 
Sbjct: 58  KDPEAIAVANE-LAAQDKRVSVVHNGFETFQTALDELGIDKIDGALFDLGISSPQIDDGS 116

Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF+   PLDMRM  + G+SA++ +  A+ +DL  ++   GEE+ + +IA AIV +R+
Sbjct: 117 RGFSFRFDAPLDMRMDPTRGMSAAEWIATASEQDLHEVIKNYGEERFSRQIARAIVAQRE 176

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            +P  TT  L+ L+ + V   +  +  PATR+FQA+RIF+N E+EE+   L      LK 
Sbjct: 177 ESPIDTTHKLAQLVAQNVRTRERGQ-DPATRTFQAVRIFINRELEEVEAVLPQVAGRLKE 235

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQED 299
           GG L V++FHSLEDR+VK+F    S      R  +   ++      +++  K + P   +
Sbjct: 236 GGRLAVIAFHSLEDRIVKQFIKKYSQHAPLPRWAVVKEADLPQPPLKAV-GKAIKPGSTE 294

Query: 300 VAFNRRSRSAKLRAGMR 316
              N R+RSA LR   R
Sbjct: 295 TEANPRARSAVLRVAER 311


>gi|57239214|ref|YP_180350.1| S-adenosyl-methyltransferase MraW [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58579172|ref|YP_197384.1| S-adenosyl-methyltransferase MraW [Ehrlichia ruminantium str.
           Welgevonden]
 gi|68565416|sp|Q5HB44|RSMH_EHRRW RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|57161293|emb|CAH58214.1| putative S-adenosyl-methyltransferase MraW [Ehrlichia ruminantium
           str. Welgevonden]
 gi|58417798|emb|CAI27002.1| S-adenosyl-methyltransferase mraW [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 301

 Score =  362 bits (930), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 129/303 (42%), Positives = 187/303 (61%), Gaps = 11/303 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQETM 78
           H PVLL++++ +L+P  G + +DATFG+GGYSR+        V A+D+D +  +  ++  
Sbjct: 3   HTPVLLKEMLDILSPQNGGIYVDATFGSGGYSRAILNSADCQVYAIDQDEYTYTFYEKLS 62

Query: 79  RDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
            D+  +   F   FS++Q  + +   K VDGVVFD+GVSSMQ++   RGFSF K+GPLDM
Sbjct: 63  NDFPNRIHFFINKFSKIQQILNNVQIKKVDGVVFDIGVSSMQLEDASRGFSFSKNGPLDM 122

Query: 136 RMSCS--GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           RMS S  G+ A   VN  +  ++  ++   G EK + +IA AIV  R      TT +L+S
Sbjct: 123 RMSTSLSGVDARMFVNTVSEVEMANVIYQYGGEKYSRKIARAIVNARNKNMINTTGELAS 182

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           +I+  V  SKN+ I PATR+FQA+RI+VN E+EEL +G+  A   L  GG +IV+SFHSL
Sbjct: 183 IIRSVVSRSKNHSIDPATRTFQAIRIWVNKELEELEKGIACAANILNQGGKIIVISFHSL 242

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           EDR+VK  F      ++     +        FQ I KK++ PT E++  N R+RSAKLRA
Sbjct: 243 EDRIVKVIFK-----LLCDGKSVNLLNLGLGFQLINKKIIRPTAEEIHSNPRARSAKLRA 297

Query: 314 GMR 316
            ++
Sbjct: 298 ILK 300


>gi|159900036|ref|YP_001546283.1| S-adenosyl-methyltransferase MraW [Herpetosiphon aurantiacus ATCC
           23779]
 gi|263456121|sp|A9B518|RSMH_HERA2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|159893075|gb|ABX06155.1| S-adenosyl-methyltransferase MraW [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 337

 Score =  362 bits (930), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 113/336 (33%), Positives = 184/336 (54%), Gaps = 30/336 (8%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSC 73
           +  H+PVL +  +A LN  P    +D T G  G+S    +       ++A+D+DP A++ 
Sbjct: 2   VSMHIPVLYDAALAALNLRPDGRYIDGTLGWAGHSSGILEGSGPTGRLLAIDQDPMALAA 61

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E +  Y E+ ++    + Q+       G   VDG++ D+GVSS Q+D  +RGFSFQ  
Sbjct: 62  ARERLAPYGERATIVHGNYRQMASLAAQHGWQQVDGILLDIGVSSPQLDLPERGFSFQYD 121

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM+ + G SA+D++ Q +   L  ++   GEE+ + RIA  IV++R  +P  +T 
Sbjct: 122 APLDMRMNPTRGESAADLIAQLDETSLANLIYEYGEERLSRRIARRIVEQRSKSPITSTA 181

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            L+SL++  V   +  + HPATR+FQALRI VN+E+  L +GL +A   L  GG L V++
Sbjct: 182 QLASLVKSAV-GGQAGKTHPATRTFQALRIAVNDELGALREGLAAATNLLAPGGRLAVIT 240

Query: 250 FHSLEDRLVKKFFASRSGKVMAV--------RHMIPSNAHP--------------AVFQS 287
           FHSLEDR+VK++   ++ + +           H   +N  P                 + 
Sbjct: 241 FHSLEDRIVKEWMRDQASECLIPAKLEILACPHNCAANTGPRSCIYPVGRDCDYVPTLEV 300

Query: 288 ITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIE 323
           +++K +  T E++  N R+RSAKLR   R + +++ 
Sbjct: 301 LSRKPIEATPEELKANPRARSAKLRVAERRLTKTLA 336


>gi|291616264|ref|YP_003519006.1| MraW [Pantoea ananatis LMG 20103]
 gi|291151294|gb|ADD75878.1| MraW [Pantoea ananatis LMG 20103]
 gi|327392716|dbj|BAK10138.1| S-adenosyl-methyltransferase MraW [Pantoea ananatis AJ13355]
          Length = 313

 Score =  362 bits (930), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 122/312 (39%), Positives = 174/312 (55%), Gaps = 19/312 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H  VLL++ +  LN     + +D TFG GG+SR           +IA+DRDP A++   
Sbjct: 6   KHTTVLLDEAVNGLNIKEDGIYIDGTFGRGGHSRLILAQLGASGKLIAIDRDPQAIAAAA 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           E       +FS+    FS L DYV ++     +DG++ DLGVSS Q+D  +RGFSF + G
Sbjct: 66  EI---KDPRFSIVHGPFSALADYVAERELVGRIDGILLDLGVSSPQLDDAERGFSFMRDG 122

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + G SA++ + QA   D+  +L   GEE+ A RIA AIV+R +  P   T++
Sbjct: 123 PLDMRMDPTRGHSAAEWLKQAEEADIAFVLKTYGEERFAKRIARAIVERNREQPMTRTKE 182

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ +I       K+   HPATRSFQA+RI++N+E+EE+   L+ A + L   G L V+SF
Sbjct: 183 LAEVIAAATPI-KDKFKHPATRSFQAIRIWINSELEEIDTALKGAVEVLAPQGRLSVISF 241

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNRR 305
           HSLEDRLVK+F   +S      R +  +              + K  +VP   +V  N R
Sbjct: 242 HSLEDRLVKRFMRDQSRGPQVPRGLPMTEQQLNALGGRQLTLLGK--MVPGDAEVKENPR 299

Query: 306 SRSAKLRAGMRT 317
           +RS+ LR   RT
Sbjct: 300 ARSSVLRIAERT 311


>gi|261253815|ref|ZP_05946388.1| S-adenosyl-methyltransferase MraW [Vibrio orientalis CIP 102891]
 gi|260937206|gb|EEX93195.1| S-adenosyl-methyltransferase MraW [Vibrio orientalis CIP 102891]
          Length = 324

 Score =  362 bits (930), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 120/324 (37%), Positives = 171/324 (52%), Gaps = 23/324 (7%)

Query: 8   TMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIAL 64
           TM+ A       H+ VLL + I  L   P  + +D TFG GG+SR+          + ++
Sbjct: 8   TMTEAF-----KHISVLLHESIDGLAIKPDGIYIDGTFGRGGHSRTILSKLGDNGRLYSI 62

Query: 65  DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDC 120
           DRDP A++   +       +F++    FS +  Y  +      VDGV+ DLGVSS Q+D 
Sbjct: 63  DRDPQAIAEAGKI---DDPRFTIIHGPFSGMAQYAAEYDLVGKVDGVLLDLGVSSPQLDD 119

Query: 121 GDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFSF K GPLDMRM   SGI  S  + +A++ D+T ++   GE+K A RIA AIV  
Sbjct: 120 AERGFSFMKDGPLDMRMDPTSGIPVSQWLMEADLDDITWVIREFGEDKHARRIAKAIVAY 179

Query: 180 RQSA---PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236
           R++    P   T  L+ LI      S   + HPATRSFQA RI++N+E+EE+   L+ A 
Sbjct: 180 RENEENEPMTRTGQLAKLISDAAPKSFKEKKHPATRSFQAFRIYINSELEEIDTALKGAA 239

Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT----KKV 292
             L   G L V+SFHSLEDR+VK+F    S        +  +        S       K 
Sbjct: 240 SILAPEGRLSVISFHSLEDRMVKRFIRKESKGPEVPHGIPMTEDQIKALGSANLKPVGKA 299

Query: 293 VVPTQEDVAFNRRSRSAKLRAGMR 316
           + P++++V  N RSRS+ LR   +
Sbjct: 300 IKPSKQEVEENTRSRSSVLRIAEK 323


>gi|27364047|ref|NP_759575.1| 16S rRNA m(4)C1402 methyltranserfase [Vibrio vulnificus CMCP6]
 gi|37678790|ref|NP_933399.1| S-adenosyl-methyltransferase MraW [Vibrio vulnificus YJ016]
 gi|320157431|ref|YP_004189810.1| rRNA small subunit methyltransferase H [Vibrio vulnificus MO6-24/O]
 gi|30173038|sp|Q8DEK2|RSMH_VIBVU RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|42559438|sp|Q7MNV9|RSMH_VIBVY RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|27360164|gb|AAO09102.1| S-adenosyl-methyltransferase MraW [Vibrio vulnificus CMCP6]
 gi|37197531|dbj|BAC93370.1| predicted S-adenosylmethionine-dependent methyltransferase [Vibrio
           vulnificus YJ016]
 gi|319932743|gb|ADV87607.1| rRNA small subunit methyltransferase H [Vibrio vulnificus MO6-24/O]
          Length = 316

 Score =  362 bits (930), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 117/316 (37%), Positives = 168/316 (53%), Gaps = 18/316 (5%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72
               H+ VLL + I  L   P  + +D TFG GG+SR+          + ++DRDP A++
Sbjct: 3   DTFQHISVLLHESIDGLAIKPDGIYIDGTFGRGGHSRTILSKLGEHGRLYSIDRDPQAIA 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128
              +       +F++    FS + +Y         VDGV+ DLGVSS Q+D  +RGFSF 
Sbjct: 63  EAGKI---DDPRFTIIHGPFSGMANYAEQYDLVGKVDGVLLDLGVSSPQLDDAERGFSFM 119

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ---SAP 184
           K GPLDMRM   SGI  S  + +A++ D+T ++   GE+K A RIA AIV  R+     P
Sbjct: 120 KDGPLDMRMDPTSGIPVSQWLMEADLDDITWVIREFGEDKHARRIAKAIVAHREDETKEP 179

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
              T  L+ LI +    S   + HPATR+FQA RI++N+E+EE+   L+ A   L   G 
Sbjct: 180 LTRTSQLAKLISEAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAASILAPEGR 239

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT----KKVVVPTQEDV 300
           L V+SFHSLEDR+VK+F    S        +  + A      S       K ++PT +++
Sbjct: 240 LSVISFHSLEDRMVKRFMRKESKGPEVPHGIPLTEAQIKALGSANMKTVGKAIMPTAQEI 299

Query: 301 AFNRRSRSAKLRAGMR 316
             N RSRS+ LR   +
Sbjct: 300 ELNPRSRSSVLRIAEK 315


>gi|329954177|ref|ZP_08295272.1| S-adenosyl-methyltransferase MraW [Bacteroides clarus YIT 12056]
 gi|328528154|gb|EGF55134.1| S-adenosyl-methyltransferase MraW [Bacteroides clarus YIT 12056]
          Length = 305

 Score =  362 bits (930), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 105/313 (33%), Positives = 164/313 (52%), Gaps = 16/313 (5%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPF 69
           +      H+PVLL   +  +N  P    +D TFG GG+SR        G  ++  D+D  
Sbjct: 1   MKEETTYHIPVLLMPSVDGMNIRPDGTYVDVTFGGGGHSREIVSRLGEGGRLLGFDQDED 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFS 126
           A              F+  ++ F  L +++   G   VD V+ DLGVSS   D  +RGFS
Sbjct: 61  AEQNIVN-----DPHFTFVRSNFRYLHNFLRYHGIGQVDAVLADLGVSSHHFDDSERGFS 115

Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           F+  G LDMRM+  +G++A+D+VN  + + L  I  + GE K + ++A  IVK R +   
Sbjct: 116 FRFDGALDMRMNKRAGLTAADIVNTYDEERLADIFYLYGELKNSRKLASVIVKARATRKI 175

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            T  +   +I+    F +        + FQALRI VN E+E L + L +A +ALK GG L
Sbjct: 176 GTIGEFLDIIKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLYAATEALKPGGRL 233

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           +V+++HSLEDR+VK    + + +  A +    +   P  F+ +  KV++P  +++  N R
Sbjct: 234 VVITYHSLEDRMVKNIMKTGNIEGKAEKDFFGNVQTP--FRLVNNKVIIPDDDEIERNPR 291

Query: 306 SRSAKLRAGMRTV 318
           SRSAKLR   + +
Sbjct: 292 SRSAKLRIAEKII 304


>gi|262273821|ref|ZP_06051634.1| S-adenosyl-methyltransferase MraW [Grimontia hollisae CIP 101886]
 gi|262222236|gb|EEY73548.1| S-adenosyl-methyltransferase MraW [Grimontia hollisae CIP 101886]
          Length = 317

 Score =  362 bits (930), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 121/317 (38%), Positives = 178/317 (56%), Gaps = 23/317 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H+ VLL + I  L   P  + +D TFG GG++R   +       + ++DRDP A+    +
Sbjct: 7   HISVLLHESIDGLALKPDGIYVDGTFGRGGHTREILRRLGENGRLYSIDRDPQAIEEAGK 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  +F++    FS +Q Y+  +G    +DGV+ DLGVSS Q+D  +RGFSF + GP
Sbjct: 67  I---DDPRFNIIHGPFSGIQQYMEARGLSGKIDGVLLDLGVSSPQLDDPERGFSFMRDGP 123

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ---SAPFQTT 188
           LDMRM   SGI AS  + +A+  D+  +L   GEE+ A RIA AIV  R+     P   T
Sbjct: 124 LDMRMDPTSGIPASQWLAEADADDIAWVLKEFGEERFAKRIARAIVAHREDETKEPLTRT 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L++LI      S++ + HPATR FQA+RI++N+E+EE+   ++ A + L  GG L ++
Sbjct: 184 LQLANLIASVSP-SRDRKKHPATRCFQAIRIYINSELEEIETAMQGALEVLAPGGRLSII 242

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH------PAVFQSITKKVVVPTQEDVAF 302
           SFHSLEDRLVK+F   +S K   V H +P           A  + +  K + P+  +V+ 
Sbjct: 243 SFHSLEDRLVKRFIRKQS-KGPDVPHGVPLTEEQIRALGQAKMKPV-GKALKPSDVEVSD 300

Query: 303 NRRSRSAKLRAGMRTVE 319
           N RSRS+ LR   +  E
Sbjct: 301 NTRSRSSVLRVAEKLGE 317


>gi|261881137|ref|ZP_06007564.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Prevotella bergensis DSM 17361]
 gi|270332142|gb|EFA42928.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Prevotella bergensis DSM 17361]
          Length = 337

 Score =  362 bits (930), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 112/307 (36%), Positives = 164/307 (53%), Gaps = 18/307 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA---VSC 73
           HVPVLL++ +  L+  P    +D TFG GG+SR          ++ + D+D  A   +S 
Sbjct: 38  HVPVLLKESVDGLDIKPDGTYVDVTFGGGGHSREILSRLHQDGHLYSFDQDADAEQNLSG 97

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130
             ET+    + F+  ++ F  L++++   GV   DG++ DLGVSS   D   RGFSF+  
Sbjct: 98  SGETL----DNFTFVRSNFRYLKNWMRYYGVEHIDGLLADLGVSSHHFDDEARGFSFRFD 153

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM+   G +A+DVVN    + L  I  + GE K + RIA  +VK R      TTQ
Sbjct: 154 APLDMRMNKRGGQTAADVVNNYEEEQLADIFYLYGELKSSRRIASVLVKERNQGKILTTQ 213

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           D  + +Q    F +        + FQALRI VN E+  L + L +A   L  GG L V++
Sbjct: 214 DFVNAVQPL--FRRGREKKDMAKLFQALRIEVNQEMAALREMLTAATDLLAPGGRLSVIT 271

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           +HSLEDR+VK    + + +    +        P  F+ +  KV+VP+ E++A N RSRSA
Sbjct: 272 YHSLEDRMVKNMMKTGNAEGKLRQDFFGRVECP--FRLVNNKVIVPSDEELARNPRSRSA 329

Query: 310 KLRAGMR 316
           KLR   +
Sbjct: 330 KLRIAEK 336


>gi|22127508|ref|NP_670931.1| S-adenosyl-methyltransferase MraW [Yersinia pestis KIM 10]
 gi|45443369|ref|NP_994908.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51595030|ref|YP_069221.1| S-adenosyl-methyltransferase MraW [Yersinia pseudotuberculosis IP
           32953]
 gi|108809545|ref|YP_653461.1| S-adenosyl-methyltransferase MraW [Yersinia pestis Antiqua]
 gi|108810578|ref|YP_646345.1| S-adenosyl-methyltransferase MraW [Yersinia pestis Nepal516]
 gi|150260418|ref|ZP_01917146.1| S-adenosyl-methyltransferase [Yersinia pestis CA88-4125]
 gi|153947578|ref|YP_001402352.1| S-adenosyl-methyltransferase MraW [Yersinia pseudotuberculosis IP
           31758]
 gi|162419065|ref|YP_001607303.1| S-adenosyl-methyltransferase MraW [Yersinia pestis Angola]
 gi|165928201|ref|ZP_02224033.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165937803|ref|ZP_02226364.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166008805|ref|ZP_02229703.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166212069|ref|ZP_02238104.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167401265|ref|ZP_02306765.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167422048|ref|ZP_02313801.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167426442|ref|ZP_02318195.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167470126|ref|ZP_02334830.1| S-adenosyl-methyltransferase MraW [Yersinia pestis FV-1]
 gi|170025741|ref|YP_001722246.1| S-adenosyl-methyltransferase MraW [Yersinia pseudotuberculosis
           YPIII]
 gi|186894036|ref|YP_001871148.1| S-adenosyl-methyltransferase MraW [Yersinia pseudotuberculosis
           PB1/+]
 gi|218927743|ref|YP_002345618.1| S-adenosyl-methyltransferase MraW [Yersinia pestis CO92]
 gi|229837062|ref|ZP_04457227.1| S-adenosyl-dependent methyltransferase protein with activity on
           membrane-located substrates [Yersinia pestis Pestoides
           A]
 gi|229840435|ref|ZP_04460594.1| S-adenosyl-dependent methyltransferase protein with activity on
           membrane-located substrates [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229843023|ref|ZP_04463173.1| S-adenosyl-dependent methyltransferase protein with activity on
           membrane-located substrates [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229900770|ref|ZP_04515894.1| S-adenosyl-dependent methyltransferase protein with activity on
           membrane-located substrates [Yersinia pestis Nepal516]
 gi|270487860|ref|ZP_06204934.1| S-adenosyl-methyltransferase MraW [Yersinia pestis KIM D27]
 gi|294502635|ref|YP_003566697.1| S-adenosyl-methyltransferase [Yersinia pestis Z176003]
 gi|20139012|sp|Q8ZIF7|RSMH_YERPE RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|85542907|sp|Q66EL3|RSMH_YERPS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|122979342|sp|Q1C206|RSMH_YERPA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|123246757|sp|Q1CMN5|RSMH_YERPN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263504671|sp|A7FM74|RSMH_YERP3 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263504678|sp|B2K4D8|RSMH_YERPB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263504680|sp|A9R132|RSMH_YERPG RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263504693|sp|B1JK89|RSMH_YERPY RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|21960606|gb|AAM87182.1|AE013965_9 putative apolipoprotein [Yersinia pestis KIM 10]
 gi|45438238|gb|AAS63785.1| Predicted S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51588312|emb|CAH19920.1| S-adenosyl-dependent methyl transferase [Yersinia
           pseudotuberculosis IP 32953]
 gi|108774226|gb|ABG16745.1| hypothetical protein YPN_0413 [Yersinia pestis Nepal516]
 gi|108781458|gb|ABG15516.1| hypothetical protein YPA_3554 [Yersinia pestis Antiqua]
 gi|115346354|emb|CAL19226.1| conserved hypothetical protein [Yersinia pestis CO92]
 gi|149289826|gb|EDM39903.1| S-adenosyl-methyltransferase [Yersinia pestis CA88-4125]
 gi|152959073|gb|ABS46534.1| S-adenosyl-methyltransferase MraW [Yersinia pseudotuberculosis IP
           31758]
 gi|162351880|gb|ABX85828.1| S-adenosyl-methyltransferase MraW [Yersinia pestis Angola]
 gi|165914215|gb|EDR32831.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165919812|gb|EDR37113.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165992144|gb|EDR44445.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166206815|gb|EDR51295.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166960185|gb|EDR56206.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167049290|gb|EDR60698.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167054540|gb|EDR64348.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169752275|gb|ACA69793.1| S-adenosyl-methyltransferase MraW [Yersinia pseudotuberculosis
           YPIII]
 gi|186697062|gb|ACC87691.1| S-adenosyl-methyltransferase MraW [Yersinia pseudotuberculosis
           PB1/+]
 gi|229682109|gb|EEO78201.1| S-adenosyl-dependent methyltransferase protein with activity on
           membrane-located substrates [Yersinia pestis Nepal516]
 gi|229689899|gb|EEO81958.1| S-adenosyl-dependent methyltransferase protein with activity on
           membrane-located substrates [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229696801|gb|EEO86848.1| S-adenosyl-dependent methyltransferase protein with activity on
           membrane-located substrates [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229706005|gb|EEO92014.1| S-adenosyl-dependent methyltransferase protein with activity on
           membrane-located substrates [Yersinia pestis Pestoides
           A]
 gi|262360665|gb|ACY57386.1| S-adenosyl-methyltransferase [Yersinia pestis D106004]
 gi|262364611|gb|ACY61168.1| S-adenosyl-methyltransferase [Yersinia pestis D182038]
 gi|270336364|gb|EFA47141.1| S-adenosyl-methyltransferase MraW [Yersinia pestis KIM D27]
 gi|294353094|gb|ADE63435.1| S-adenosyl-methyltransferase [Yersinia pestis Z176003]
 gi|320016913|gb|ADW00485.1| S-adenosyl-methyltransferase MraW [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 320

 Score =  362 bits (929), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 120/314 (38%), Positives = 176/314 (56%), Gaps = 19/314 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H  VLL++ +  LN     + +D TFG GG+SR           +IA+DRDP A+   +
Sbjct: 13  KHTSVLLDEAVKGLNIRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDRDPEAIEAAK 72

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +       +FS+    FS L  YV D      +DG++ DLGVSS Q+D  +RGFSF + G
Sbjct: 73  QI---TDPRFSIVHGPFSDLAHYVRDLDLVGRIDGILLDLGVSSPQLDDAERGFSFMRDG 129

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  S G+SA++ + +A+  D+  +L   GEE+ A R+A AIV+R  + P   T++
Sbjct: 130 PLDMRMDPSRGLSAAEWLMKASADDIAWVLKTFGEERFAKRLAKAIVERNLTQPMTRTKE 189

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ LI     F ++   HPATRSFQA+RI++N+E+EE+ + L  A + L   G L V+SF
Sbjct: 190 LADLIANASPF-RDKHKHPATRSFQAIRIYINSELEEIERALDGAHEVLAPEGRLSVISF 248

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNRR 305
           HSLEDR+VK F    S        +  + A          +S+ K  ++P   ++A N R
Sbjct: 249 HSLEDRIVKNFIRHHSRGPQVPAGLPLTEAQLRSMGGRTLKSVGK--MMPGDAEIAENPR 306

Query: 306 SRSAKLRAGMRTVE 319
           +RS+ LR   R  E
Sbjct: 307 ARSSVLRFAERIGE 320


>gi|257784283|ref|YP_003179500.1| S-adenosyl-methyltransferase MraW [Atopobium parvulum DSM 20469]
 gi|257472790|gb|ACV50909.1| S-adenosyl-methyltransferase MraW [Atopobium parvulum DSM 20469]
          Length = 327

 Score =  362 bits (929), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 115/309 (37%), Positives = 171/309 (55%), Gaps = 12/309 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H PV+L +V+  L+P PG+V+ D T G  G++    K+       I +D+D  A      
Sbjct: 14  HQPVMLAEVLRELDPKPGEVVCDCTLGGAGHTVEMAKLIAPDGLSIGIDQDAMAHQAAAA 73

Query: 77  TMRDYKEQ--FSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            ++       F   +  F  L + +      GVD  +FD+GVSS Q+D  +RGFS+ +  
Sbjct: 74  RLKQEVPNAEFLPLKGNFGDLDELLVSAEVPGVDCFLFDIGVSSPQLDIPERGFSYHEDA 133

Query: 132 PLDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
           PLDMRM       +A +V+N  N  DL RIL I G+EK ASRIA  IV+ R+  P QTT 
Sbjct: 134 PLDMRMDPGKQTPTAQEVINTYNEADLARILRIYGDEKFASRIARRIVQTREKRPIQTTF 193

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  +I+  +  + + +  HPA ++FQALRI VN+E+E L +GLRSA      GG + V+
Sbjct: 194 ELVEVIKAAIPAAARRHGGHPARKTFQALRIEVNHELEVLERGLRSAIAWANPGGRICVI 253

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           S+HSLEDR+VK  F+  S   +      +       +   IT+K +V T E++  N R+R
Sbjct: 254 SYHSLEDRIVKHVFSELSQGCICPPDLPVCMCGQVPIVDVITRKPLVATPEEIERNPRAR 313

Query: 308 SAKLRAGMR 316
           SA +R  ++
Sbjct: 314 SALMRVAVK 322


>gi|261379351|ref|ZP_05983924.1| S-adenosyl-methyltransferase MraW [Neisseria subflava NJ9703]
 gi|284797791|gb|EFC53138.1| S-adenosyl-methyltransferase MraW [Neisseria subflava NJ9703]
          Length = 320

 Score =  362 bits (929), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 112/317 (35%), Positives = 173/317 (54%), Gaps = 15/317 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           MS   ++    HV VLL + +  L      + +D TFG GG+SR           ++  D
Sbjct: 1   MSKVENYQ---HVTVLLHEAVDALAIREDGIYVDGTFGRGGHSRLILSRLGKQGRLVVFD 57

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGD 122
           +DP A++   E +    ++ S+    F   Q  + + G+D   G +FDLG+SS QID G 
Sbjct: 58  KDPEAIAVANE-LAVQDKRVSVVHNGFETFQTALDELGIDKIDGALFDLGISSPQIDDGS 116

Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF+   PLDMRM  + G+SA++ +  A+ +DL  ++   GEE+ + +IA AIV +R+
Sbjct: 117 RGFSFRFDAPLDMRMDPTRGMSAAEWIATASEQDLHEVIKNYGEERFSRQIARAIVAQRE 176

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            +P  TT+ L+ L+ + V   +  +  PATR+FQA+RIF+N E+EE+   L      LK 
Sbjct: 177 ESPIDTTRKLAQLVAQNVRTRERGQ-DPATRTFQAVRIFINRELEEVEAVLPQVAGRLKE 235

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQED 299
           GG L V++FHSLEDR+VK+F    S      R  +   ++      +++  K + P   +
Sbjct: 236 GGRLAVIAFHSLEDRIVKQFIKKYSQHAPLPRWAVVKEADLPQPPLKAV-GKAIKPGSTE 294

Query: 300 VAFNRRSRSAKLRAGMR 316
              N R+RSA LR   R
Sbjct: 295 TETNPRARSAVLRVAER 311


>gi|219849709|ref|YP_002464142.1| S-adenosyl-methyltransferase MraW [Chloroflexus aggregans DSM 9485]
 gi|263445784|sp|B8G5X3|RSMH_CHLAD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|219543968|gb|ACL25706.1| S-adenosyl-methyltransferase MraW [Chloroflexus aggregans DSM 9485]
          Length = 301

 Score =  362 bits (929), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 126/311 (40%), Positives = 180/311 (57%), Gaps = 22/311 (7%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73
              HVPV++ +V+A L P PG   +DAT G GG++ +  +    G  ++ +D DP A+  
Sbjct: 4   TFQHVPVMVAEVVAALAPRPGGRYIDATVGGGGHALAVLQAARPGGRLLGIDADPAALVA 63

Query: 74  GQETMRDYKEQFSLF--QATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQ 128
             + + +   +        +F+ L     + G   VDG++FDLGVSS Q+D  +RGFSF 
Sbjct: 64  TADRLAEAGLREHAVLCHGSFADLAVIAGETGFINVDGILFDLGVSSYQLDTPERGFSFA 123

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
             GPLDMR+  + G +A+D+VN  + ++L  ++   GEE  A RIA AIV+RR++ PFQ 
Sbjct: 124 ADGPLDMRLDPTQGPTAADLVNTLSERELADVIFQYGEEHAARRIARAIVERRRTQPFQR 183

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T DL+++I + V   +  RIHPATR+FQALRI VN E++ LA  L  A   L  GG L+V
Sbjct: 184 TADLAAVIARVV-GGRRGRIHPATRTFQALRIAVNRELDRLAAALPQAVHLLAPGGRLVV 242

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +SFHSLEDR+VK+F  + +                      TKK V  T ++VA N R+R
Sbjct: 243 ISFHSLEDRIVKQFMRAEA------------EGATPRLVINTKKPVAATDDEVATNPRAR 290

Query: 308 SAKLRAGMRTV 318
           SAKLR   R V
Sbjct: 291 SAKLRVATRIV 301


>gi|315498857|ref|YP_004087661.1| s-adenosyl-methyltransferase mraw [Asticcacaulis excentricus CB 48]
 gi|315416869|gb|ADU13510.1| S-adenosyl-methyltransferase MraW [Asticcacaulis excentricus CB 48]
          Length = 327

 Score =  362 bits (929), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 131/313 (41%), Positives = 200/313 (63%), Gaps = 5/313 (1%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQ 75
           +   H+ VLL +VIA + P  G++++D TFGAGGY+R+F   G+ VIA DRD       +
Sbjct: 2   SEAPHISVLLNEVIAAVAPESGRLVVDGTFGAGGYTRAFLSRGAEVIAFDRDARVQPFVE 61

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGP 132
               D+ ++F      FS++   + + GVD    +V D+GVSSMQ+D  DRGFSF + GP
Sbjct: 62  AVRGDFGDRFRFVNRPFSEMAAGLAELGVDRVDAIVLDIGVSSMQLDEADRGFSFMRDGP 121

Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           LDMRM+  G+SA+D+VN+    D+  I+ + GEE ++  IA AIVKRR+ APF+ T DL+
Sbjct: 122 LDMRMAVDGLSAADIVNEWAEADIAHIIWLYGEEHRSRAIAAAIVKRRKEAPFERTLDLA 181

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           ++++K V   + +++HPAT++FQALRI VN+E+ EL   L ++E+ LK  G+L VV+FHS
Sbjct: 182 AVVEKAVGGRRGDKVHPATKTFQALRIAVNDELGELESALEASERLLKPEGVLAVVTFHS 241

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           LEDR+VK F A R+G+  +     P         ++  + + + P++ +++ N R+RSAK
Sbjct: 242 LEDRMVKSFLAERAGRTPSGSRHAPQIQTGPAPTYRLDSTRAIAPSEAELSGNPRARSAK 301

Query: 311 LRAGMRTVERSIE 323
           LRA  RT     +
Sbjct: 302 LRAARRTGHPPFD 314


>gi|17230846|ref|NP_487394.1| S-adenosyl-methyltransferase MraW [Nostoc sp. PCC 7120]
 gi|20138995|sp|Q8YRT9|RSMH_ANASP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|17132449|dbj|BAB75053.1| all3354 [Nostoc sp. PCC 7120]
          Length = 302

 Score =  362 bits (929), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 121/318 (38%), Positives = 175/318 (55%), Gaps = 26/318 (8%)

Query: 12  AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPF 69
            I   I  H+PVL ++VI  L   PG   LD T G GG+SR   +   +  + A+D+D  
Sbjct: 7   TIEEPIFSHLPVLPQEVITGLVVRPGGRYLDVTVGGGGHSRLILEAAPDVKLTAVDQDGD 66

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
           A++  ++ + ++ EQ    ++ F+      P    DGV+ DLGVSS  +D  +RGFSF+ 
Sbjct: 67  ALTAAKQELAEFGEQVKFVRSNFAAYD--FPSTSFDGVLADLGVSSYHLDTPERGFSFRH 124

Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
              LDMRM     +SA+DV+N  +  +L  I    GEE+ + RIA  IV++R   PF TT
Sbjct: 125 QASLDMRMDQRQSLSAADVINDWDEVELANIFFKYGEERLSRRIARRIVEKR---PFHTT 181

Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L+  I  +V    +  RIHPATR FQALRI VN+E++ L   +  A KAL  GG + +
Sbjct: 182 TELAEAIASSVPPKYRYGRIHPATRVFQALRIVVNDELKSLETFIEKAPKALVPGGRIAI 241

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +SFHSLEDRLVK    +                   + + +TKK ++ T +++A N RSR
Sbjct: 242 ISFHSLEDRLVKHGLRNS-----------------PLLKVLTKKPIIATDDEIANNPRSR 284

Query: 308 SAKLRAGMRTVERSIEDD 325
           SAKLR   +  E   ED+
Sbjct: 285 SAKLRIAEKQAETGDEDN 302


>gi|88858794|ref|ZP_01133435.1| S-adenosyl-methyltransferase [Pseudoalteromonas tunicata D2]
 gi|88819020|gb|EAR28834.1| S-adenosyl-methyltransferase [Pseudoalteromonas tunicata D2]
          Length = 312

 Score =  362 bits (929), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 121/308 (39%), Positives = 185/308 (60%), Gaps = 15/308 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H+ VL+E+ I  L+  P  + +D TFG GG+S    K       + A+DRDP A+    +
Sbjct: 7   HISVLMEETIDALDIKPDGIYIDGTFGRGGHSGEILKKLGENGRLQAIDRDPQAIKAA-Q 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              D   +FS+   TFS+++    +      VDG++ D+GVSS Q+D  +RGFSF K GP
Sbjct: 66  RFAD-DARFSIAHNTFSEIKLVAEEADLIGKVDGILLDIGVSSPQLDDAERGFSFMKDGP 124

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+ S G SA++ +  A+++++T ++   GEEK   RIAH I++ R   P  +T  L
Sbjct: 125 LDMRMNPSAGRSAAEWLAVADLEEITWVIKTYGEEKFGRRIAHKILETRVHTPITSTAQL 184

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI + V   K+   HPATR+FQA+RI++N+E+EE+   L ++ + LK GG L+V+SFH
Sbjct: 185 AKLIDEAVPV-KDKHKHPATRAFQAIRIYINSELEEITTALSASLEVLKPGGRLVVISFH 243

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNA---HPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SLEDR+VK+F   +S      R +  +NA        ++I  K + P +E++A N R+RS
Sbjct: 244 SLEDRIVKQFIKKQSKGEALPRGLPLTNAQLQQKLTLKAI-GKAIKPGEEELARNSRARS 302

Query: 309 AKLRAGMR 316
           + LR   R
Sbjct: 303 SVLRIAER 310


>gi|332991932|gb|AEF01987.1| 16S rRNA m(4)C1402 methyltranserfase [Alteromonas sp. SN2]
          Length = 313

 Score =  362 bits (929), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 124/315 (39%), Positives = 185/315 (58%), Gaps = 17/315 (5%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFA 70
             +   HV VLL++ I  L   P  + +DATFG GG+S        +   +IA DRDP A
Sbjct: 3   QSSEFKHVSVLLDECIEALAIKPNGIYIDATFGRGGHSAHILDALGSDGTLIAFDRDPQA 62

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFS 126
           +    +   D   +F +  + F  + + +   G    +DGV+ DLGVSS Q+D  +RGFS
Sbjct: 63  IEAA-KRFAD-DSRFRIIHSPFGDMAEEIEALGLTGKIDGVLMDLGVSSPQLDDAERGFS 120

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           F + GPLDMRM  S G SA+D + +A  +D+T+++   GEEK   RIAHAIV  R++ P 
Sbjct: 121 FLRDGPLDMRMDTSRGESAADWLARAEEQDITQVIKEFGEEKFGKRIAHAIVNTRETTPI 180

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
             T  L++LI + V   K+   HPATR+FQ +RI++N E+E+L  GL++A + L   G L
Sbjct: 181 TRTAQLAALIDEAVPV-KDKFKHPATRAFQGIRIYINAELEQLRTGLKAATQVLAKEGRL 239

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHP----AVFQSITKKVVVPTQEDVA 301
            V+SFHSLEDRLVK+F   +S K  +V H +P          V +++++  + P++ ++A
Sbjct: 240 AVISFHSLEDRLVKRFIKDQS-KGKSVPHNLPITQAEIDADKVLKALSR-AIKPSELEIA 297

Query: 302 FNRRSRSAKLRAGMR 316
            N RSRS+ LR   +
Sbjct: 298 NNVRSRSSVLRVAEK 312


>gi|330721283|gb|EGG99370.1| rRNA small subunit methyltransferase H [gamma proteobacterium
           IMCC2047]
          Length = 312

 Score =  362 bits (929), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 115/307 (37%), Positives = 173/307 (56%), Gaps = 10/307 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H  VLL + +  L   PG   +D TFG GG+SR+          ++ +D+DP A++   E
Sbjct: 7   HDSVLLNEAVDALVVDPGGCYVDGTFGRGGHSRAILSRLSSKGRLLVIDKDPQAIAYAHE 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVP----DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              D  E+  +  A+F++L+D       + GV GV+ DLGVSS Q+D  +RGFSF + GP
Sbjct: 67  HFGD-DERVIIGHASFAELKDLAAAHGLENGVTGVLLDLGVSSPQLDDPERGFSFTQDGP 125

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G SA++ + +A  ++++ +L   GEE+ A R+A AIV  R   PF  T  L
Sbjct: 126 LDMRMDTSRGQSAAEWIAEAPEEEISTVLKEYGEERFARRMAKAIVAERAQRPFTRTAHL 185

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + +I++     +  + +PATR+FQ +RIF+N E+++LA  L  A   L   G L+V+SFH
Sbjct: 186 AEVIKQANPAWEKGK-NPATRAFQGIRIFINRELDDLALVLDQAVDLLADKGRLVVISFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+VKKF   +       RH+               K V  +++++  N R+RSA +
Sbjct: 245 SLEDRIVKKFIHKQEKGEPLPRHLPIMQDQIDQRLKRVGKAVKASEQELKDNVRARSAIM 304

Query: 312 RAGMRTV 318
           R   RTV
Sbjct: 305 RIAERTV 311


>gi|156973213|ref|YP_001444120.1| S-adenosyl-methyltransferase MraW [Vibrio harveyi ATCC BAA-1116]
 gi|263504515|sp|A7MWK7|RSMH_VIBHB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|156524807|gb|ABU69893.1| hypothetical protein VIBHAR_00894 [Vibrio harveyi ATCC BAA-1116]
          Length = 316

 Score =  362 bits (929), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 118/316 (37%), Positives = 169/316 (53%), Gaps = 18/316 (5%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72
               H+ VLL + I  L   P  + +D TFG GG+SR+          + ++DRDP A++
Sbjct: 3   ETFQHISVLLNESIDGLAIKPDGIYIDGTFGRGGHSRTILSKLGENGRLYSIDRDPQAIA 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128
              E  +    +F++    FS +  Y  + G    VDGV+ DLGVSS Q+D  +RGFSF 
Sbjct: 63  ---EAAKIDDPRFTIIHGPFSGMAKYAEEYGLVGKVDGVLLDLGVSSPQLDDAERGFSFM 119

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ---SAP 184
           K GPLDMRM   SGI  S  + +A++ D+T ++   GE+K A RIA AIV  R+   + P
Sbjct: 120 KDGPLDMRMDPTSGIPVSQWLMEADLDDITWVIREFGEDKHARRIAKAIVAYREDEENEP 179

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
              T  L+ LI      S   + HPATR+FQA RI++N+E+EE+   L+ A   L   G 
Sbjct: 180 MVRTGQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAASILAPEGR 239

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV----VPTQEDV 300
           L V+SFHSLEDR+VK+F    S        +  +        S   K +     PT++++
Sbjct: 240 LSVISFHSLEDRMVKRFIRKESKGPEVPHGIPMTEEQIRALGSANMKPIGKANKPTKQEI 299

Query: 301 AFNRRSRSAKLRAGMR 316
             N RSRS+ LR   +
Sbjct: 300 DMNPRSRSSVLRIAEK 315


>gi|262383993|ref|ZP_06077129.1| methylase MraW [Bacteroides sp. 2_1_33B]
 gi|262294891|gb|EEY82823.1| methylase MraW [Bacteroides sp. 2_1_33B]
          Length = 305

 Score =  362 bits (929), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 107/306 (34%), Positives = 166/306 (54%), Gaps = 17/306 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           HVPV+L + +  L+  P  + +D TFG GG+SR   K       +   D+D  A      
Sbjct: 9   HVPVMLRESLEGLDIRPDGIYVDVTFGGGGHSRKILKRLGSEGELYGFDQDADAEHNV-- 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  +F+  ++ F  L +++   G    VDG++ DLGVSS   D  DRGFSF+  G 
Sbjct: 67  ---PADPRFTFVRSNFRYLYNFMRYYGESGEVDGLLADLGVSSHHFDDKDRGFSFRFDGA 123

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+  +G +A+D+VN    + L  +  + GE K + ++A  +VK R++   +T ++ 
Sbjct: 124 LDMRMNTRAGQTAADIVNNYTAEALADVFYLYGELKVSRKLASVLVKARETKKIETIEEF 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             +I+      K+       + FQALRI VN+E+  L + LRS  + L+ GG L+V+++H
Sbjct: 184 LEVIKPFT--GKDKEKKFLAQVFQALRIEVNDEMRALKEMLRSTLRVLRPGGRLVVITYH 241

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDRLVK F  + + +    +    +   P  F+ +  KV+VPT E+V  N RSRSAKL
Sbjct: 242 SLEDRLVKNFLKTGNFEGKCEQDFFGNVRSP--FRLVNNKVIVPTDEEVERNPRSRSAKL 299

Query: 312 RAGMRT 317
           R   + 
Sbjct: 300 RIAEKV 305


>gi|288929756|ref|ZP_06423599.1| S-adenosyl-methyltransferase MraW [Prevotella sp. oral taxon 317
           str. F0108]
 gi|288328857|gb|EFC67445.1| S-adenosyl-methyltransferase MraW [Prevotella sp. oral taxon 317
           str. F0108]
          Length = 319

 Score =  361 bits (928), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 113/319 (35%), Positives = 172/319 (53%), Gaps = 17/319 (5%)

Query: 11  SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRD 67
             I    G HVPVLL + +  LN   G V +D TFG GG++R         + + + D+D
Sbjct: 4   DNIITAQGYHVPVLLAESVEALNIVEGGVYVDVTFGGGGHTRHILSKMDGTARLFSFDQD 63

Query: 68  PFAVSCGQETMRDY------KEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQI 118
             A    +    D        E+F+  ++ F  L +++   GVD   G++ DLGVSS   
Sbjct: 64  ADAEENTRRKSPDGQQPLANDERFTFVRSNFRYLDNWMRYYGVDHVDGILADLGVSSHHF 123

Query: 119 DCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177
           D  +RGFSF+   PLDMRM+ +  ++A+ V+N  + + L  +  + GE +Q+ RIA AIV
Sbjct: 124 DDQERGFSFRFDAPLDMRMNKNAALTAAQVLNTYDEERLADVFFLYGEIRQSRRIASAIV 183

Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
           K R  A  QTTQ  +++++   +F +        + FQALRI VNNE+  L + L++A +
Sbjct: 184 KARAKAAVQTTQQFAAIVEP--FFKREREKKEMAKLFQALRIEVNNEMNALKEMLQAAAQ 241

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297
            L  GG L V+++HSLEDR+VK F  + + +    +        P  F  +  KV+VPT 
Sbjct: 242 WLGKGGRLSVITYHSLEDRMVKNFMKTGNVEGKLSQDFFGRAQTP--FTLVNNKVIVPTD 299

Query: 298 EDVAFNRRSRSAKLRAGMR 316
           ++   N RSRSAKLR   +
Sbjct: 300 DEQLRNPRSRSAKLRIAEK 318


>gi|15642406|ref|NP_232039.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121587636|ref|ZP_01677400.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|153818411|ref|ZP_01971078.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|153822223|ref|ZP_01974890.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|227082532|ref|YP_002811083.1| S-adenosyl-methyltransferase mraW [Vibrio cholerae M66-2]
 gi|229507529|ref|ZP_04397034.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae BX 330286]
 gi|229512275|ref|ZP_04401754.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae B33]
 gi|229519411|ref|ZP_04408854.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae RC9]
 gi|229607035|ref|YP_002877683.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae MJ-1236]
 gi|254849531|ref|ZP_05238881.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Vibrio
           cholerae MO10]
 gi|255746918|ref|ZP_05420863.1| S-adenosyl-methyltransferase MraW [Vibrio cholera CIRS 101]
 gi|262161539|ref|ZP_06030649.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae INDRE 91/1]
 gi|298500231|ref|ZP_07010036.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae MAK 757]
 gi|20139220|sp|Q9KPF9|RSMH_VIBCH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263504940|sp|C3LQV4|RSMH_VIBCM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|9656982|gb|AAF95552.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121548146|gb|EAX58219.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|126511044|gb|EAZ73638.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|126520233|gb|EAZ77456.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|227010420|gb|ACP06632.1| S-adenosyl-methyltransferase mraW [Vibrio cholerae M66-2]
 gi|229344100|gb|EEO09075.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae RC9]
 gi|229352240|gb|EEO17181.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae B33]
 gi|229355034|gb|EEO19955.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae BX 330286]
 gi|229369690|gb|ACQ60113.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae MJ-1236]
 gi|254845236|gb|EET23650.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Vibrio
           cholerae MO10]
 gi|255735320|gb|EET90720.1| S-adenosyl-methyltransferase MraW [Vibrio cholera CIRS 101]
 gi|262028850|gb|EEY47504.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae INDRE 91/1]
 gi|297540924|gb|EFH76978.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae MAK 757]
          Length = 316

 Score =  361 bits (928), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 120/323 (37%), Positives = 174/323 (53%), Gaps = 23/323 (7%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           M+++       H+ VLL + I  L   P  + +D TFG GG+SR+          + ++D
Sbjct: 1   MTASFQ-----HISVLLNESIEGLAIKPDGIYIDGTFGRGGHSRTILAQLGPEGRLYSID 55

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCG 121
           RDP A++  Q+       +F++    FS + +Y         VDGV+FDLGVSS Q+D  
Sbjct: 56  RDPQAIAEAQKI---DDPRFTIVHGPFSGIAEYAQRYDLVGKVDGVLFDLGVSSPQLDDA 112

Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF K GPLDMRM   SG+  S  + QA++ D+T ++   GE+K A RIA AIV+ R
Sbjct: 113 ERGFSFMKDGPLDMRMDPTSGMPVSAWLAQADLDDITWVIREFGEDKHARRIAKAIVEYR 172

Query: 181 QSA---PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
           ++    P   T  L+ LI      S   + HPATR+FQA RI++N+E+EE+   LR A  
Sbjct: 173 ENELNEPLTRTSQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALRGASD 232

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSIT-KKVV 293
            L   G L V+SFHSLEDR+VK+F    S        +  +          +  T  K +
Sbjct: 233 ILAPQGRLSVISFHSLEDRMVKRFMRKESQGPQVPHGIPLTQDQIRALGSAKMKTVGKAL 292

Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316
            P+ ++V  N RSRS+ LR   +
Sbjct: 293 KPSDQEVELNPRSRSSVLRVAEK 315


>gi|153802806|ref|ZP_01957392.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
 gi|254226626|ref|ZP_04920206.1| conserved hypothetical protein [Vibrio cholerae V51]
 gi|124121671|gb|EAY40414.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
 gi|125620845|gb|EAZ49199.1| conserved hypothetical protein [Vibrio cholerae V51]
          Length = 316

 Score =  361 bits (928), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 120/323 (37%), Positives = 174/323 (53%), Gaps = 23/323 (7%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           M+++       H+ VLL + I  L   P  + +D TFG GG+SR+          + ++D
Sbjct: 1   MTASFQ-----HISVLLNESIEGLAIKPDGIYIDGTFGRGGHSRTILAQLGPQGRLYSID 55

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCG 121
           RDP A++  Q+       +F++    FS + +Y         VDGV+FDLGVSS Q+D  
Sbjct: 56  RDPQAIAEAQKI---DDPRFTIIHGPFSGIAEYAQRYDLVGKVDGVLFDLGVSSPQLDDA 112

Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF K GPLDMRM   SG+  S  + QA++ D+T ++   GE+K A RIA AIV+ R
Sbjct: 113 ERGFSFMKDGPLDMRMDPTSGMPVSAWLAQADLDDITWVIREFGEDKHARRIAKAIVEYR 172

Query: 181 QSA---PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
           ++    P   T  L+ LI      S   + HPATR+FQA RI++N+E+EE+   LR A  
Sbjct: 173 ENELNEPLTRTSQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALRGASD 232

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSIT-KKVV 293
            L   G L V+SFHSLEDR+VK+F    S        +  +          +  T  K +
Sbjct: 233 ILAPQGRLSVISFHSLEDRMVKRFMRKESQGPEVPHGLPLTQEQIRALGSAKMKTVGKAL 292

Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316
            P+ ++V  N RSRS+ LR   +
Sbjct: 293 KPSDQEVELNPRSRSSVLRVAEK 315


>gi|29348864|ref|NP_812367.1| S-adenosyl-methyltransferase MraW [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253568789|ref|ZP_04846199.1| S-adenosyl-methyltransferase mraW [Bacteroides sp. 1_1_6]
 gi|298387947|ref|ZP_06997496.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 1_1_14]
 gi|42558980|sp|Q8A251|RSMH_BACTN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|29340770|gb|AAO78561.1| S-adenosyl-methyltransferase mraW [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|251840808|gb|EES68889.1| S-adenosyl-methyltransferase mraW [Bacteroides sp. 1_1_6]
 gi|298259354|gb|EFI02229.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 1_1_14]
          Length = 304

 Score =  361 bits (928), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 107/304 (35%), Positives = 163/304 (53%), Gaps = 16/304 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HVPVLL++ +  +N  P    +D TFG  G+SR        G  ++  D+D  A     E
Sbjct: 9   HVPVLLKESVDGMNIHPDGTYVDVTFGGAGHSREILSRLGEGGRLLGFDQDEDA-----E 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                   F+  ++ F  LQ+++       VD ++ DLGVSS   D  +RGFSF+  G L
Sbjct: 64  RNIVNDPHFTFVRSNFRYLQNFLRYHDIEQVDAILADLGVSSHHFDDSERGFSFRFDGAL 123

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  +G++A+D+VN    + L  I  + GE K + ++A AIVK R     +T  +  
Sbjct: 124 DMRMNKRAGLTAADIVNTYEEERLANIFYLYGELKNSRKLASAIVKARNGQSIRTIGEFL 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I+    F +        + FQALRI VN E+E L + L +A +ALK GG L+V+++HS
Sbjct: 184 EIIKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLAAATEALKPGGRLVVITYHS 241

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK    + + +  A      +   P  F+ +  KV+VP + ++  N RSRSAKLR
Sbjct: 242 LEDRMVKNIMKTGNVEGKAETDFFGNLQTP--FRLVNNKVIVPDEAEIERNPRSRSAKLR 299

Query: 313 AGMR 316
              +
Sbjct: 300 IAEK 303


>gi|298480587|ref|ZP_06998784.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. D22]
 gi|298273408|gb|EFI14972.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. D22]
          Length = 304

 Score =  361 bits (928), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 107/304 (35%), Positives = 163/304 (53%), Gaps = 16/304 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HVPVLL++ +  +N  PG   +D TFG  G+SR        G  ++  D+D  A     E
Sbjct: 9   HVPVLLKESVDGMNIQPGGTYVDVTFGGAGHSREILSRLGEGGRLLGFDQDEDA-----E 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                   F   ++ F  LQ+++       VD ++ DLGVSS   D  +RGFSF+  G L
Sbjct: 64  RNIVNDPHFIFVRSNFRYLQNFLRYHDIEQVDAILADLGVSSHHFDDSERGFSFRFDGAL 123

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  +GI+A+D+VN    + L  +  + GE K + ++A  IVK R     +T  +  
Sbjct: 124 DMRMNKRAGITAADIVNTYEEERLANLFYLYGELKNSRKLASVIVKARSGQNIRTIGEFL 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I+    F +        + FQALRI VN E+E L + L++A +ALK GG L+V+++HS
Sbjct: 184 EIIKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLQAATEALKPGGRLVVITYHS 241

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK    + + +  A      +   P  F+ +  KV+VP + ++  N RSRSAKLR
Sbjct: 242 LEDRMVKNIMKTGNVEGKAESDFFGNLQTP--FRLVNNKVIVPDEAEIERNPRSRSAKLR 299

Query: 313 AGMR 316
              +
Sbjct: 300 IAEK 303


>gi|254230425|ref|ZP_04923805.1| S-adenosyl-methyltransferase MraW [Vibrio sp. Ex25]
 gi|262395267|ref|YP_003287121.1| S-adenosyl-methyltransferase MraW [Vibrio sp. Ex25]
 gi|151937058|gb|EDN55936.1| S-adenosyl-methyltransferase MraW [Vibrio sp. Ex25]
 gi|262338861|gb|ACY52656.1| S-adenosyl-methyltransferase MraW [Vibrio sp. Ex25]
          Length = 316

 Score =  361 bits (928), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 115/316 (36%), Positives = 168/316 (53%), Gaps = 18/316 (5%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72
               H+ VLL + I  L   P  + +D TFG GG+SR+          + ++DRDP A++
Sbjct: 3   ETFQHISVLLNESIDGLAIKPDGIYIDGTFGRGGHSRTILSKLGENGRLYSIDRDPQAIA 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128
              +       +F++    FS + +Y  +      VDGV+ DLGVSS Q+D  +RGFSF 
Sbjct: 63  EAGKI---NDPRFTIIHGPFSGIAEYAEEYDLVGKVDGVLLDLGVSSPQLDDAERGFSFM 119

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ---SAP 184
           K GPLDMRM   SGI  S  + +A++ D+T ++   GE+K A RIA AIV  R+   + P
Sbjct: 120 KDGPLDMRMDPTSGIPVSQWLMEADLDDITWVIREFGEDKHARRIAKAIVAYREDEENEP 179

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
              T  L+ LI      S   + HPATR+FQA RI++N+E+EE+   L+ A   L   G 
Sbjct: 180 LVRTGQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAASILAPEGR 239

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK----KVVVPTQEDV 300
           L V+SFHSLEDR+VK+F    S        +  +        S       K + P+++++
Sbjct: 240 LSVISFHSLEDRMVKRFIRKESKGPEVPHGIPMTEEQIRALGSANMKAVSKAIKPSKQEI 299

Query: 301 AFNRRSRSAKLRAGMR 316
             N RSRS+ LR   +
Sbjct: 300 EMNPRSRSSVLRIAEK 315


>gi|146310292|ref|YP_001175366.1| S-adenosyl-methyltransferase MraW [Enterobacter sp. 638]
 gi|263447009|sp|A4W6I5|RSMH_ENT38 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|145317168|gb|ABP59315.1| S-adenosyl-methyltransferase MraW [Enterobacter sp. 638]
          Length = 313

 Score =  361 bits (928), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 115/312 (36%), Positives = 175/312 (56%), Gaps = 19/312 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++  +
Sbjct: 6   KHTSVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGAEGRLLAIDRDPQAIAVAK 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +FS     FS L DYV ++     +DG++ DLGVSS Q+D  +RGFSF + G
Sbjct: 66  TI---DDPRFSFVHGPFSALADYVSERDLTGKIDGILLDLGVSSPQLDDAERGFSFMRDG 122

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + G SA++ +  A   D+  ++   GEE+   RIA  IV+R +  P   T++
Sbjct: 123 PLDMRMDPTRGQSAAEWLLTAEEADIAWVIKTFGEERFGKRIARGIVERNRIEPMTRTKE 182

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ ++       K+   HPATR+FQA+RI+VN+E+EE+   L+S+   L  GG L ++SF
Sbjct: 183 LAEVVTAATPV-KDKFKHPATRTFQAVRIWVNSELEEIELALKSSLGVLAPGGRLSIISF 241

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305
           HSLEDR+VK+F   +S        +  +            + + K  ++P +E+VA N R
Sbjct: 242 HSLEDRIVKRFMREQSRGPQVPAGLPMTEDQLRKLGGRYLRVLGK--MMPGEEEVAENPR 299

Query: 306 SRSAKLRAGMRT 317
           +RS+ LR   RT
Sbjct: 300 ARSSVLRIAERT 311


>gi|260893420|ref|YP_003239517.1| S-adenosyl-methyltransferase MraW [Ammonifex degensii KC4]
 gi|260865561|gb|ACX52667.1| S-adenosyl-methyltransferase MraW [Ammonifex degensii KC4]
          Length = 291

 Score =  361 bits (928), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 115/309 (37%), Positives = 173/309 (55%), Gaps = 26/309 (8%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMRD 80
           ++++V+A L   PG V +D T G GG++ +          +I LDRDP A+S  ++ + +
Sbjct: 1   MVKEVLAYLAVKPGGVYVDCTVGGGGHAAAILAFIGDEGRLIGLDRDPEALSFARKRLGN 60

Query: 81  YKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
              +  L  A+F+ L + +     +GVDGV++DLGVSS Q+D  +RGF++++  PLDMR 
Sbjct: 61  -DPRVHLVHASFADLAEVLAGLGVRGVDGVLYDLGVSSYQLDRPERGFTYREDAPLDMRF 119

Query: 138 SCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
             S   +A+D+VN+   K+L  I+   GEE+ A RIA  IV+ R   P  TT  L  +I+
Sbjct: 120 DPSSPVTAADLVNRLEEKELACIIREFGEERWAKRIARFIVRARARRPILTTGQLVEIIK 179

Query: 197 KTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           + +   ++    HPA R+FQALRI VN E+E L   L  A   LK GG L+V+S+HSLED
Sbjct: 180 EAIPASARRRGPHPARRTFQALRIAVNRELEALKASLPQAADCLKPGGRLVVLSYHSLED 239

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           RLVK FF   +                   + +TKK + P+ E+V  N R+ S KLRA  
Sbjct: 240 RLVKGFFRQYTC-----------------LRPLTKKPLTPSPEEVKQNPRASSCKLRAAE 282

Query: 316 RTVERSIED 324
           + +     +
Sbjct: 283 KILNPEGGE 291


>gi|224536607|ref|ZP_03677146.1| hypothetical protein BACCELL_01482 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521698|gb|EEF90803.1| hypothetical protein BACCELL_01482 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 306

 Score =  361 bits (928), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 103/315 (32%), Positives = 163/315 (51%), Gaps = 16/315 (5%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69
           ++  +  HVPVLL+  +  +N  P    +D TFG GG+SR        G  ++  D+D  
Sbjct: 1   MNEELTYHVPVLLKPSVDGMNIRPDGTYVDVTFGGGGHSREILSRLGDGGRLLGFDQDED 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFS 126
           A     +        F   ++ F  L +++       VD ++ DLGVSS   D  +RGFS
Sbjct: 61  AEQNIVDN-----PHFIFVRSNFRYLHNFLRYHDIEEVDAILADLGVSSHHFDDSERGFS 115

Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           F+  G LDMRM+  +G +A+D++N  + + L  I  + GE K + ++A  +VK R     
Sbjct: 116 FRFDGALDMRMNKRAGDTAADIINTYDEERLADIFYLYGELKNSRKLASVLVKARAGQKI 175

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            T  +   +I+    F +        + FQALRI VN E+E L + L +A +ALK GG L
Sbjct: 176 TTIGEFLEIIKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLYAATEALKPGGRL 233

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           +V+++HSLEDR+VK    + + +    +    +   P  F+ +  KV+VP + ++  N R
Sbjct: 234 VVITYHSLEDRMVKNMMKTGNVEGKMEKDFFGNVQTP--FRLVNNKVIVPDEAEIERNPR 291

Query: 306 SRSAKLRAGMRTVER 320
           SRSAKLR   +  E 
Sbjct: 292 SRSAKLRIAEKKGEE 306


>gi|227486691|ref|ZP_03917007.1| S-adenosylmethionine-dependent methyltransferase involved in cell
           envelope biogenesis [Anaerococcus lactolyticus ATCC
           51172]
 gi|227235279|gb|EEI85294.1| S-adenosylmethionine-dependent methyltransferase involved in cell
           envelope biogenesis [Anaerococcus lactolyticus ATCC
           51172]
          Length = 309

 Score =  361 bits (928), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 106/313 (33%), Positives = 165/313 (52%), Gaps = 12/313 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPF 69
           +++   +H PVL  + I  LN  P  +  D T G GG+S+   +  S    +I +D+D  
Sbjct: 1   MNNMKFEHTPVLYRECIENLNIKPDGIYADLTLGKGGHSKLILEKLSAKGLLIGIDQDKA 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFS 126
           A+    E ++DY  +   F   F  +   + + G   +DG + D+GVSS QID  +RGFS
Sbjct: 61  AIEAASENLKDYDNKV-FFNTNFENIGKVLTEAGFNKIDGALMDIGVSSYQIDNPERGFS 119

Query: 127 FQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           +   GPLDMRM+  + ++A  +VN+ +  +LTRI    GEE+ +  IA  IVK R +   
Sbjct: 120 YIHDGPLDMRMNRQNELTAEKIVNECSQDELTRIFFDYGEERFSKAIAKNIVKARANERI 179

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            TT  L +++ K+  F     +HP  R FQALRI VN E++ L + + +    +   G L
Sbjct: 180 NTTFKLRNIVMKSARF---TEVHPEKRVFQALRIEVNRELDVLTKAIDTIIDFIDKDGRL 236

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
            +++FHSLEDR+VK  F   +   +      +    H A  + ITKK +    +++  N 
Sbjct: 237 AIITFHSLEDRIVKNKFKDLATGCICPPEIPVCVCNHVAKVKIITKKPITAKADELRENS 296

Query: 305 RSRSAKLRAGMRT 317
           RS+ AKLR   R 
Sbjct: 297 RSKPAKLRVCQRI 309


>gi|258625131|ref|ZP_05720048.1| S-adenosyl-methyltransferase mraW [Vibrio mimicus VM603]
 gi|262166452|ref|ZP_06034189.1| S-adenosyl-methyltransferase MraW [Vibrio mimicus VM223]
 gi|262170644|ref|ZP_06038322.1| S-adenosyl-methyltransferase MraW [Vibrio mimicus MB-451]
 gi|258582582|gb|EEW07414.1| S-adenosyl-methyltransferase mraW [Vibrio mimicus VM603]
 gi|261891720|gb|EEY37706.1| S-adenosyl-methyltransferase MraW [Vibrio mimicus MB-451]
 gi|262026168|gb|EEY44836.1| S-adenosyl-methyltransferase MraW [Vibrio mimicus VM223]
          Length = 316

 Score =  361 bits (928), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 120/323 (37%), Positives = 174/323 (53%), Gaps = 23/323 (7%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           M+++       H+ VLL + I  L   P  + +D TFG GG+SR+          + ++D
Sbjct: 1   MTASFQ-----HISVLLNESIEGLAIKPDGIYIDGTFGRGGHSRTILAQLGPQGRLYSID 55

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCG 121
           RDP A++  Q+       +F++    FS + +Y         VDGV+FDLGVSS Q+D  
Sbjct: 56  RDPQAIAEAQKI---DDPRFTIIHGPFSGIAEYAQRYDLVGKVDGVLFDLGVSSPQLDDA 112

Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF K GPLDMRM   SG+  S  + QA++ D+T ++   GE+K A RIA AIV+ R
Sbjct: 113 ERGFSFMKDGPLDMRMDPTSGMPVSAWLAQADLDDITWVIREFGEDKHARRIAKAIVEYR 172

Query: 181 QSA---PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
           ++    P   T  L+ LI      S   + HPATR+FQA RI++N+E+EE+   LR A  
Sbjct: 173 ENELNEPLTRTSQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALRGASD 232

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSIT-KKVV 293
            L   G L V+SFHSLEDR+VK+F    S        +  +          +  T  K +
Sbjct: 233 ILAPQGRLSVISFHSLEDRMVKRFMRKESQGPEVPHGIPLTQDQIRALGSAKMKTVGKAL 292

Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316
            P+ ++V  N RSRS+ LR   +
Sbjct: 293 KPSDQEVELNPRSRSSVLRVAEK 315


>gi|298377152|ref|ZP_06987106.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 3_1_19]
 gi|298266136|gb|EFI07795.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 3_1_19]
          Length = 305

 Score =  361 bits (928), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 107/306 (34%), Positives = 164/306 (53%), Gaps = 17/306 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           HVPV+L + +  L+  P  + +D TFG GG+S    K       +   D+D  A      
Sbjct: 9   HVPVMLRESLEGLDIRPDGIYVDVTFGGGGHSCEILKRLGSEGELYGFDQDADAEHNI-- 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  +F+  ++ F  L +++   G    VDG++ DLGVSS   D  DRGFSF+  G 
Sbjct: 67  ---PADPRFTFVRSNFRYLYNFMRYYGESGEVDGLLADLGVSSHHFDDKDRGFSFRFDGA 123

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+  +G +A+D+VN    + L  +  + GE K + ++A  +VK R++   +T  D 
Sbjct: 124 LDMRMNTRAGQTAADIVNNYTAEALADVFYLYGELKVSRKLASVLVKARETKKIETIGDF 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             +I+      K+       + FQALRI VN+E+  L + LRS  + L+ GG L+V+++H
Sbjct: 184 LEVIKPFT--GKDKEKKFLAQVFQALRIEVNDEMRALKEMLRSTLRVLRPGGRLVVITYH 241

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDRLVK F  + + +    +    +   P  F+ +  KV+VPT E+V  N RSRSAKL
Sbjct: 242 SLEDRLVKNFLKTGNFEGKCEQDFFGNVRSP--FRLVNNKVIVPTDEEVERNPRSRSAKL 299

Query: 312 RAGMRT 317
           R   + 
Sbjct: 300 RIAEKV 305


>gi|294792047|ref|ZP_06757195.1| S-adenosyl-methyltransferase MraW [Veillonella sp. 6_1_27]
 gi|294457277|gb|EFG25639.1| S-adenosyl-methyltransferase MraW [Veillonella sp. 6_1_27]
          Length = 311

 Score =  361 bits (928), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 106/307 (34%), Positives = 164/307 (53%), Gaps = 10/307 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS---FCKMGSNVIALDRDPFAVSCGQ 75
           +H  VLL + +  +   P  + +D T G  G++ +          +I LD+D  A+S  +
Sbjct: 5   NHTSVLLRETVDSVVTNPKGIYVDCTLGGAGHAHAVGEILDPEGMIIGLDQDEDALSVAR 64

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + + D K Q       FS L+D + + G   VDG +FDLGVSS Q+D  +RGFS+   GP
Sbjct: 65  QRLSDLKCQVLTIPTNFSNLKDALQNAGIYEVDGFIFDLGVSSYQLDTPERGFSYMNDGP 124

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM     ++A ++VN+ + + L +I+   GEE+ A RI   IV+ RQ     TT +L
Sbjct: 125 LDMRMDKDAPLTAEEIVNEYDSEQLLQIIRDYGEERWAKRIVEFIVEARQEKRITTTGEL 184

Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+  +    + +  HPA R+FQA+RI VN E+  L      A   LK  G + V++F
Sbjct: 185 VRIIKNAIPAKARQDGPHPAKRTFQAIRIEVNRELAILHDSFVDAVSMLKPKGKIGVITF 244

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+ K+ F   S   +      +    H AV ++   K + P+  ++  N R+RSA
Sbjct: 245 HSLEDRITKQTFKELSTACICPPQLPVCVCNHKAVVKAKN-KAIEPSIGEIEVNPRARSA 303

Query: 310 KLRAGMR 316
           KLR  ++
Sbjct: 304 KLRVAVK 310


>gi|197285925|ref|YP_002151797.1| S-adenosyl-methyltransferase [Proteus mirabilis HI4320]
 gi|227356432|ref|ZP_03840820.1| S-adenosyl-methyltransferase [Proteus mirabilis ATCC 29906]
 gi|262824977|sp|B4F119|RSMH_PROMH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|194683412|emb|CAR44158.1| S-adenosyl-methyltransferase [Proteus mirabilis HI4320]
 gi|227163542|gb|EEI48463.1| S-adenosyl-methyltransferase [Proteus mirabilis ATCC 29906]
          Length = 315

 Score =  361 bits (928), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 124/314 (39%), Positives = 175/314 (55%), Gaps = 20/314 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H  VLL++ +  LN  P  + +D TFG GG+SR           +IA+DRDP A++   E
Sbjct: 8   HTSVLLDEAVNGLNIKPSGIYIDGTFGRGGHSRLILSQLGEQGRLIAIDRDPQAIAVANE 67

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  +FS+    FS ++ Y+ + G    VDGV+ DLGVSS Q+D  +RGFSF + GP
Sbjct: 68  I---DDPRFSIIHGPFSNIEHYINELGLSGKVDGVLLDLGVSSPQLDDPERGFSFMRDGP 124

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ-SAPFQTTQD 190
           LDMRM  + G SA+  +  A   D+T +L   GEE+ A RIA AIV R +   P   T+ 
Sbjct: 125 LDMRMDPTTGQSAAQWLMNAEEDDITWVLKTFGEERFAKRIARAIVARNKTEEPLTRTKQ 184

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ LI +     + ++ HPATRSFQA+RI++N+E++E+ + L+ A   L   G L V+SF
Sbjct: 185 LADLISEASPVKERHK-HPATRSFQAIRIYINSELDEIEKALKGAVSILAPAGRLSVISF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNRR 305
           HSLEDRLVK+F    S   +    +  +         A   SI K  + PT  +V  N R
Sbjct: 244 HSLEDRLVKRFIRDESKGPVVPAGIPLTEEQIKALGSARLSSIHK--MKPTGVEVEENPR 301

Query: 306 SRSAKLRAGMRTVE 319
           +RS+ LR   R  E
Sbjct: 302 ARSSVLRVAQRIEE 315


>gi|317474530|ref|ZP_07933804.1| MraW methylase [Bacteroides eggerthii 1_2_48FAA]
 gi|316909211|gb|EFV30891.1| MraW methylase [Bacteroides eggerthii 1_2_48FAA]
          Length = 305

 Score =  361 bits (928), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 106/313 (33%), Positives = 161/313 (51%), Gaps = 16/313 (5%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69
           +      H+PVLL   +  +N  P    +D TFG GG+SR        G  ++  D+D  
Sbjct: 1   MKEETTYHIPVLLMPSVDGMNIRPDGTYVDMTFGGGGHSREILSRLGEGGRLLGFDQDED 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFS 126
           A              F+  ++ F  L +++   G   VD ++ DLGVSS   D  +RGFS
Sbjct: 61  AEQNIVN-----DPHFTFVRSNFRYLHNFLRYHGIEQVDAILADLGVSSHHFDDSERGFS 115

Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           F+  G LDMRM+  +G +A+D+VN    + L  I  + GE K + ++A  IVK R +   
Sbjct: 116 FRFDGMLDMRMNKRAGCTAADIVNTYEEERLADIFYLYGELKNSRKLASVIVKARATRQI 175

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            T  D   +I+    F +        + FQALRI VN E+E L + L +A +ALK GG L
Sbjct: 176 STIGDFLDIIKPL--FGREREKKELAKVFQALRIEVNREMEALKEMLYAATEALKPGGRL 233

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           +V+++HSLEDR+VK    + + +  A +    +   P  F+ +  KV+VP + ++  N R
Sbjct: 234 VVITYHSLEDRMVKNIMKTGNIEGKAEKDFFGNVQTP--FRLVNNKVIVPDETEIERNPR 291

Query: 306 SRSAKLRAGMRTV 318
           SRSAKLR   +  
Sbjct: 292 SRSAKLRIAEKIE 304


>gi|121728362|ref|ZP_01681391.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|147675217|ref|YP_001217911.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae O395]
 gi|153214084|ref|ZP_01949218.1| conserved hypothetical protein [Vibrio cholerae 1587]
 gi|153826882|ref|ZP_01979549.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
 gi|153830362|ref|ZP_01983029.1| conserved hypothetical protein [Vibrio cholerae 623-39]
 gi|229521240|ref|ZP_04410660.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae TM 11079-80]
 gi|229524395|ref|ZP_04413800.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae bv. albensis
           VL426]
 gi|229528604|ref|ZP_04417994.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae 12129(1)]
 gi|262168390|ref|ZP_06036087.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae RC27]
 gi|262190392|ref|ZP_06048652.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae CT 5369-93]
 gi|297581036|ref|ZP_06942961.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae RC385]
 gi|121629353|gb|EAX61784.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|124115510|gb|EAY34330.1| conserved hypothetical protein [Vibrio cholerae 1587]
 gi|146317100|gb|ABQ21639.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|148874169|gb|EDL72304.1| conserved hypothetical protein [Vibrio cholerae 623-39]
 gi|149739298|gb|EDM53554.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
 gi|227014303|gb|ACP10513.1| S-adenosyl-methyltransferase mraW [Vibrio cholerae O395]
 gi|229332378|gb|EEN97864.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae 12129(1)]
 gi|229337976|gb|EEO02993.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae bv. albensis
           VL426]
 gi|229341772|gb|EEO06774.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae TM 11079-80]
 gi|262023282|gb|EEY41986.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae RC27]
 gi|262033732|gb|EEY52212.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae CT 5369-93]
 gi|297534862|gb|EFH73698.1| S-adenosyl-methyltransferase MraW [Vibrio cholerae RC385]
          Length = 316

 Score =  361 bits (928), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 120/323 (37%), Positives = 174/323 (53%), Gaps = 23/323 (7%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           M+++       H+ VLL + I  L   P  + +D TFG GG+SR+          + ++D
Sbjct: 1   MTASFQ-----HISVLLNESIEGLAIKPDGIYIDGTFGRGGHSRTILAQLGPEGRLYSID 55

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCG 121
           RDP A++  Q+       +F++    FS + +Y         VDGV+FDLGVSS Q+D  
Sbjct: 56  RDPQAIAEAQKI---DDPRFTIVHGPFSGIAEYAQRYDLVGKVDGVLFDLGVSSPQLDDA 112

Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF K GPLDMRM   SG+  S  + QA++ D+T ++   GE+K A RIA AIV+ R
Sbjct: 113 ERGFSFMKDGPLDMRMDPTSGMPVSAWLAQADLDDITWVIREFGEDKHARRIAKAIVEYR 172

Query: 181 QSA---PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
           ++    P   T  L+ LI      S   + HPATR+FQA RI++N+E+EE+   LR A  
Sbjct: 173 ENELNEPLTRTSQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALRGASD 232

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSIT-KKVV 293
            L   G L V+SFHSLEDR+VK+F    S        +  +          +  T  K +
Sbjct: 233 ILAPQGRLSVISFHSLEDRMVKRFMRKESQGPEVPHGLPLTQEQIRALGSAKMKTVGKAL 292

Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316
            P+ ++V  N RSRS+ LR   +
Sbjct: 293 KPSDQEVELNPRSRSSVLRVAEK 315


>gi|52425730|ref|YP_088867.1| S-adenosyl-methyltransferase MraW [Mannheimia succiniciproducens
           MBEL55E]
 gi|115311583|sp|Q65RX8|RSMH_MANSM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|52307782|gb|AAU38282.1| unknown [Mannheimia succiniciproducens MBEL55E]
          Length = 322

 Score =  361 bits (928), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 124/325 (38%), Positives = 172/325 (52%), Gaps = 20/325 (6%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           MS     +  +H+ VLL + +  L      + +D TFG GG+SR           +IA+D
Sbjct: 1   MSEQNTFSSPEHITVLLHEAVDGLALKDKGIYIDGTFGRGGHSRLILSKLTENGRLIAID 60

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCG 121
           RDP A++  +E       +F +   +FS +       G    +DG++ DLGVSS Q+D  
Sbjct: 61  RDPRAIAAAEEI---QDSRFHIEHNSFSAIPYICEKLGLVGKIDGILLDLGVSSPQLDDA 117

Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF K GPLDMRM  S G+SA+  + Q   +DL  +L   GEE+ A RIAHAIV   
Sbjct: 118 ERGFSFMKDGPLDMRMDTSKGLSAAQWLQQVTEEDLAWVLKTFGEERFAKRIAHAIVNYN 177

Query: 181 Q------SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234
           +      + P   T  L+ LI + V F K+   HPATRSFQA+RIF+N+E++EL   L S
Sbjct: 178 KSAVQNGTEPLTRTLPLAELIAQAVPF-KDKHKHPATRSFQAIRIFINSELDELESVLHS 236

Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ--SITKKV 292
           A   L   G L V+SFHSLEDR+VK F   +S      + +          +   +  K 
Sbjct: 237 ALTVLAPEGRLSVISFHSLEDRMVKHFMRKQSKGESIPKGLPLREDQINRNRTLKVIGKA 296

Query: 293 VVPTQEDVAFNRRSRSAKLRAGMRT 317
           + P + +V  N RSRSA LR   R 
Sbjct: 297 IQPKESEVFANPRSRSAVLRVAERI 321


>gi|46580916|ref|YP_011724.1| S-adenosyl-methyltransferase MraW [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120601783|ref|YP_966183.1| S-adenosyl-methyltransferase MraW [Desulfovibrio vulgaris DP4]
 gi|50402222|sp|P62470|RSMH_DESVH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446337|sp|A1VBE0|RSMH_DESVV RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|46450336|gb|AAS96984.1| S-adenosyl-methyltransferase MraW [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120562012|gb|ABM27756.1| S-adenosyl-methyltransferase MraW [Desulfovibrio vulgaris DP4]
 gi|311234607|gb|ADP87461.1| S-adenosyl-methyltransferase MraW [Desulfovibrio vulgaris RCH1]
          Length = 323

 Score =  361 bits (928), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 120/321 (37%), Positives = 173/321 (53%), Gaps = 13/321 (4%)

Query: 7   KTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIA 63
           + M++        H+PVLLE+V+  L P  G   LD T G  G++ +  +    G+ +  
Sbjct: 6   ENMTAP---EWAAHIPVLLEEVLEYLAPRKGGRYLDGTLGLAGHASAVLERAGEGTELCG 62

Query: 64  LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDC 120
           LDRDP A+      +  +  Q  L+   +S+ ++ + D G   VDG + D+GVSSMQID 
Sbjct: 63  LDRDPEALRRATARLAPFAGQTHLYHLRYSEFEEALDDLGWPTVDGALIDIGVSSMQIDL 122

Query: 121 GDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFSF   GPLDMRM      SA  +VN+   + L  I+   GEE  A RIA AIV  
Sbjct: 123 AERGFSFHADGPLDMRMDPDAHESAWRLVNRERHEVLRDIIARYGEEPMAGRIARAIVDA 182

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSKNN--RIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
           R +    TT  L++++++          R HPATR+FQALR+ VN+E+ EL + L +   
Sbjct: 183 RNTGSIDTTLQLAAIVERAYPAKWRATARNHPATRTFQALRMAVNDELGELERFLDAILA 242

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPT 296
            L  GG L+V+SFHSLEDR+VK      +      RH+      H    + +TK+ V  T
Sbjct: 243 RLAPGGRLVVISFHSLEDRIVKHRMRHWAEGCRCPRHVPRCVCGHSPEVRILTKRPVTAT 302

Query: 297 QEDVAFNRRSRSAKLRAGMRT 317
             ++A N R+ SAKLRA  + 
Sbjct: 303 DGELARNPRASSAKLRAAEKV 323


>gi|282878018|ref|ZP_06286826.1| S-adenosyl-methyltransferase MraW [Prevotella buccalis ATCC 35310]
 gi|281299853|gb|EFA92214.1| S-adenosyl-methyltransferase MraW [Prevotella buccalis ATCC 35310]
          Length = 312

 Score =  361 bits (927), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 112/319 (35%), Positives = 168/319 (52%), Gaps = 19/319 (5%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           MS     T   HVPVLL++ +  LN  P  + +D TFG GG+S    +      ++ + D
Sbjct: 1   MSIKTAETY--HVPVLLQESVEGLNIQPDGIYVDVTFGGGGHSMQILRQLGENGHLFSFD 58

Query: 66  RDPFAVS----CGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQI 118
           +D  A       G E ++   + F+  ++ F  L++++       +DG++ DLGVSS   
Sbjct: 59  QDLDAEKNIPQAGNELLQQ--DNFTFVRSNFRYLKNWMRYYEIEQIDGLLADLGVSSHHF 116

Query: 119 DCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177
           D   RGFSF+   PLDMRM+ +  I+A+DVVN  + + L  +  + GE K A RIA  +V
Sbjct: 117 DDESRGFSFRFDAPLDMRMNKTASITAADVVNTYSEERLADVFYLYGELKNARRIASLLV 176

Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
           K R      TTQD   +      F +        + FQALRI VN+E+E L + L  A++
Sbjct: 177 KARTEEMIVTTQDF--IQATAPLFKREREKKDMAKLFQALRIEVNHEMESLKEMLEGAKQ 234

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297
            L+ GG L V+++HSLEDR+VK    + + +    +        P  F  I KKV+VP +
Sbjct: 235 LLRPGGRLSVITYHSLEDRIVKNMMKTGNVEGKMTQDFFGKITTP--FSLINKKVIVPAE 292

Query: 298 EDVAFNRRSRSAKLRAGMR 316
           ++   N RSRSAKLR   +
Sbjct: 293 DEQQRNPRSRSAKLRIAEK 311


>gi|162447417|ref|YP_001620549.1| S-adenosylmethionine-dependent methyltransferase [Acholeplasma
           laidlawii PG-8A]
 gi|263433262|sp|A9NFP3|RSMH1_ACHLI RecName: Full=Ribosomal RNA small subunit methyltransferase H 1;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase 1;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH 1
 gi|161985524|gb|ABX81173.1| S-adenosylmethionine-dependent methyltransferase [Acholeplasma
           laidlawii PG-8A]
          Length = 299

 Score =  361 bits (927), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 114/304 (37%), Positives = 171/304 (56%), Gaps = 14/304 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76
            H+ VLL + I  LN  P  + +DAT G GG+S    K     ++ A D+D +A+    E
Sbjct: 2   KHISVLLNESIEGLNIKPNGIYVDATLGGGGHSLEILKKLDKGHLYAFDQDAYAIGRATE 61

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++D+  + +  Q+ FS +++ + + G   VDG++FDLG+SS QID   RGFS+ K   L
Sbjct: 62  RLKDFSNK-TFIQSNFSFIKEKLNELGIYQVDGIIFDLGLSSFQIDDETRGFSYLKDYDL 120

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+    ++A ++VN    + L  I    G+E+ A +IA  IV RR   P  TT +L 
Sbjct: 121 DMRMNKDATLTAKEIVNTYERQKLADIFRAYGDEENAWKIAGMIVDRR---PLNTTLELV 177

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +   T   +K  + H A R FQALRI VN E+E L + L SA + L  GG L +++F S
Sbjct: 178 EI---TDIANKGMKGHSAKRVFQALRIEVNKELEVLERALNSALELLNIGGRLSIITFQS 234

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LED++VK F+ + S         I +   P   + IT+K V+P++ ++  N RSRSAKLR
Sbjct: 235 LEDKMVKSFYKTHSQMDYPKNIDIRTFPKPP-LKIITRKPVLPSEIELEHNSRSRSAKLR 293

Query: 313 AGMR 316
              +
Sbjct: 294 IAEK 297


>gi|312112902|ref|YP_004010498.1| S-adenosyl-methyltransferase MraW [Rhodomicrobium vannielii ATCC
           17100]
 gi|311218031|gb|ADP69399.1| S-adenosyl-methyltransferase MraW [Rhodomicrobium vannielii ATCC
           17100]
          Length = 340

 Score =  361 bits (927), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 141/310 (45%), Positives = 199/310 (64%), Gaps = 6/310 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETM 78
           H+PVLL +V+  L+P  G+  +D TFGAGGY+R+  +    +V+ LDRDP A++      
Sbjct: 31  HIPVLLREVLEALHPGVGERFIDGTFGAGGYARAILEAAHCDVLGLDRDPTAIAGACALE 90

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
             +  +  L +  FS+++D     G   +DGVV DLGVSSMQ+D  +RGFSF + GPLDM
Sbjct: 91  TAFAGRLKLAETPFSEMEDAAHGIGWDALDGVVLDLGVSSMQLDEAERGFSFMRDGPLDM 150

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RMS SG+SA+DVVN      +  IL   GEE+++  IA AIVK R++APF+ T  L++LI
Sbjct: 151 RMSSSGLSAADVVNTYEKDAIADILYTFGEERRSRAIAAAIVKDRETAPFERTGQLAALI 210

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
            + +     +  HPATRSFQALR++VN+E+ EL + L +AE+ LK GG L+VVSFHSLED
Sbjct: 211 ARVLGHKPGDPKHPATRSFQALRLYVNDELGELTRALEAAERLLKPGGRLVVVSFHSLED 270

Query: 256 RLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           R+VK+F A RSGK       IP   ++    F+   +  V P +++VA N R+RSA+LR 
Sbjct: 271 RIVKRFLAERSGKRAKASRYIPDAGDSTAPTFELRDRHGVEPGEDEVAANPRARSARLRW 330

Query: 314 GMRTVERSIE 323
            +RT    + 
Sbjct: 331 AVRTDAPPLA 340


>gi|189461555|ref|ZP_03010340.1| hypothetical protein BACCOP_02214 [Bacteroides coprocola DSM 17136]
 gi|189431761|gb|EDV00746.1| hypothetical protein BACCOP_02214 [Bacteroides coprocola DSM 17136]
          Length = 306

 Score =  361 bits (927), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 105/304 (34%), Positives = 167/304 (54%), Gaps = 16/304 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H+PVLL + I  +N  P  +  D TFG GG+S+   +     S++ + D+D  A     +
Sbjct: 11  HIPVLLNESIDGMNLHPAGIYADMTFGGGGHSKEILRRMDKNSHLYSFDQDEDAEKNIVD 70

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +F+  ++ F  L +++   GV   D ++ DLGVSS   D  +RGFSF+  G L
Sbjct: 71  -----DSRFTFVRSNFRYLHNFLRYYGVEEADAILADLGVSSHHFDDSERGFSFRFDGKL 125

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  +G++A+D+VN    + L  +  + GE K + ++A  +VK R      T  D  
Sbjct: 126 DMRMNKRAGMTAADIVNNYEEERLANVFYLYGELKNSRKLASVLVKARAQKQIVTIGDFL 185

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I+    F K        + FQALRI VN E+E L + L +A +ALK GG L+++++HS
Sbjct: 186 EIIKPL--FGKEREKKELAKVFQALRIEVNQEMEALKEMLYAATEALKPGGRLVIITYHS 243

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK    + + +    +    +   P  F+++  KV+VP+ E++A N RSRSAKLR
Sbjct: 244 LEDRIVKNLIKTGNVEGKVEQDFFGNVQTP--FRAVNNKVIVPSDEEIARNPRSRSAKLR 301

Query: 313 AGMR 316
              +
Sbjct: 302 IAEK 305


>gi|114564962|ref|YP_752476.1| S-adenosyl-methyltransferase MraW [Shewanella frigidimarina NCIMB
           400]
 gi|122298407|sp|Q07WH7|RSMH_SHEFN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|114336255|gb|ABI73637.1| S-adenosyl-methyltransferase MraW [Shewanella frigidimarina NCIMB
           400]
          Length = 313

 Score =  361 bits (927), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 114/307 (37%), Positives = 171/307 (55%), Gaps = 13/307 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H+ VLL + +  LN     + +D TFG GG+SR           +IA+DRDP A+   ++
Sbjct: 7   HLSVLLNETVDGLNIQSDGIYIDGTFGRGGHSRHVLSHLGENGRLIAIDRDPQAIEAAKQ 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              D   +F +    F QL +YV + G    ++GV+ DLGVSS Q+D  +RGFSF + GP
Sbjct: 67  FADD--PRFQIVHGGFGQLAEYVEELGLTGKINGVLLDLGVSSPQLDDAERGFSFLRDGP 124

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G +A+  + +A ++D+  +    GEEK +  IA  I   R+  PF  T+DL
Sbjct: 125 LDMRMDNSQGQTAAQWIARAEIEDMAWVFKTYGEEKNSRHIARCIAADREKTPFLRTKDL 184

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI +     + N+ HPATR FQA+RI++N+E+E++ Q L  A   L   G L V+SFH
Sbjct: 185 ADLIARITKNKERNK-HPATRVFQAIRIYINSELEQIDQALEGALAVLAPQGRLSVISFH 243

Query: 252 SLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK+F    S    V     ++ +  + +       K + P+  ++  N R+RS+
Sbjct: 244 SLEDRMVKRFIRRHSQGESVPHGLPIMEAELNKSRKLKAVSKALKPSDAELELNPRARSS 303

Query: 310 KLRAGMR 316
            LR   R
Sbjct: 304 VLRVAER 310


>gi|294142812|ref|YP_003558790.1| S-adenosyl-methyltransferase MraW [Shewanella violacea DSS12]
 gi|20139165|sp|Q9F1N8|RSMH_SHEVD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|11761327|dbj|BAB19194.1| MraW [Shewanella violacea]
 gi|293329281|dbj|BAJ04012.1| S-adenosyl-methyltransferase MraW [Shewanella violacea DSS12]
          Length = 313

 Score =  361 bits (927), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 123/307 (40%), Positives = 173/307 (56%), Gaps = 13/307 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H+ VLL + +A LN  P  + +D TFG GG+SR   K       +IA+DRDP A+   ++
Sbjct: 7   HLSVLLTETVAGLNIKPDGIYIDGTFGRGGHSREVLKHLGDNGRLIAIDRDPQAIIAAEQ 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              D   +FS+    F QL DYV D G    VDGV+ D GVSS Q+D  +RGFSF + GP
Sbjct: 67  FADDA--RFSIVHGGFGQLADYVEDLGLKGKVDGVLLDFGVSSPQLDDAERGFSFLRDGP 124

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G +A++ + +  ++D+  +    GEEK +  IA  I   R   PF  T++L
Sbjct: 125 LDMRMDNSQGQTAAEWIARTEIEDMAWVFKTYGEEKNSRHIARCIAADRDKTPFLRTKEL 184

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI +     + N+ HPATR FQA+RI++N+E+E++ Q L  A K L   G L V+SFH
Sbjct: 185 ADLIARICKSKERNK-HPATRVFQAIRIYINSELEQIDQALEGALKVLAPQGRLSVISFH 243

Query: 252 SLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK+F    S    V     +  +  +         K   P+ E+V  N+RSRS+
Sbjct: 244 SLEDRIVKRFIRRHSQGMSVPHGLPITEAEINKTRLLKAVGKATKPSTEEVEMNKRSRSS 303

Query: 310 KLRAGMR 316
            LR   R
Sbjct: 304 VLRVAER 310


>gi|295116225|emb|CBL37072.1| S-adenosyl-methyltransferase MraW [butyrate-producing bacterium
           SM4/1]
          Length = 382

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 103/321 (32%), Positives = 174/321 (54%), Gaps = 10/321 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VLL + +  LN  P  + +D T G GG++         G  +I LD+D  A++   E
Sbjct: 5   HTSVLLYETVDSLNIRPDGIYVDGTLGGGGHASLVLSRLGEGGRLIGLDQDADAIAAATE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS-GP 132
            ++ Y ++ ++ +  +  +++ +   G   VDG+  DLGVSS Q+D  +RGF++++   P
Sbjct: 65  RLKPYGDRVTVIRTNYENIKEALASLGIAKVDGIYLDLGVSSYQLDTAERGFTYREDDAP 124

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM      +A D+VN  +  +L RI+   GE++ A  IA  IVK RQ    +T  +L
Sbjct: 125 LDMRMDQRRSETAKDIVNGYSEMELYRIIRDYGEDRFAKNIAKHIVKARQEKEIETAGEL 184

Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           + +I+  +    +    HPA R+FQA+RI +N E++ L   + +  + L  GG L V++F
Sbjct: 185 TEIIRAAIPAKIRATGGHPAKRTFQAIRIELNRELQVLENSIDTMIELLNPGGRLSVITF 244

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  F              +      +  + +T+K ++P+ E+++ N+RS+SA
Sbjct: 245 HSLEDRIVKNRFRINENPCTCPPEFPVCMCGKKSRGRVVTRKPILPSDEELSANKRSKSA 304

Query: 310 KLRAGMRTVERSIEDDSFVHL 330
           KL    +   RS + ++F  L
Sbjct: 305 KLECSKKQAIRSSKPEAFRGL 325


>gi|116491168|ref|YP_810712.1| SAM-dependent methyltransferase for cell envelope biogenesis
           [Oenococcus oeni PSU-1]
 gi|290890684|ref|ZP_06553754.1| hypothetical protein AWRIB429_1144 [Oenococcus oeni AWRIB429]
 gi|122276650|sp|Q04ES5|RSMH_OENOB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|116091893|gb|ABJ57047.1| SAM-dependent methyltransferase for cell envelope biogenesis
           [Oenococcus oeni PSU-1]
 gi|290479659|gb|EFD88313.1| hypothetical protein AWRIB429_1144 [Oenococcus oeni AWRIB429]
          Length = 314

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 108/308 (35%), Positives = 167/308 (54%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77
           HV V L + +  L      + +DAT G GG++    K     +V + D+D  A+   ++ 
Sbjct: 7   HVTVFLRQAVENLAVKTNGIYVDATLGGGGHTDLLLKKALHGHVYSFDQDENAIDFNKKR 66

Query: 78  MRDY--KEQFSLFQATFSQL---QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                 + + SL  + F  L    + +    +DG+VFDLGVSS Q D   RGFS++    
Sbjct: 67  FSKEISEGRLSLIHSNFQNLIKELNLLKVFAIDGIVFDLGVSSPQFDDEKRGFSYRSDAR 126

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S  + A  +VN    KDL  I+   GEEK AS IA  I+KRR+  P  TT++L
Sbjct: 127 LDMRMDQSQSLDAYQIVNTWEYKDLASIINRYGEEKFASSIARKIIKRREVQPIITTEEL 186

Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
              I++ +     + + HPA ++FQA+RI VN+E+  L + L+ A + L +GG + V++F
Sbjct: 187 VETIKEALPDKILHKKGHPAKKTFQAIRIAVNDELNVLQEALKQASQLLNSGGRISVITF 246

Query: 251 HSLEDRLVKKFFASRSGK-VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
            SLEDR+VK FF   + K  +  +  +P       F+ +TK  ++P+ E++  N R+ SA
Sbjct: 247 QSLEDRIVKHFFNQLATKNQLPSKLPVPDKFIQEEFKLLTKHPLIPSVEEIEENHRAHSA 306

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 307 KLRVLEKN 314


>gi|317473246|ref|ZP_07932543.1| MraW methylase [Anaerostipes sp. 3_2_56FAA]
 gi|316899341|gb|EFV21358.1| MraW methylase [Anaerostipes sp. 3_2_56FAA]
          Length = 303

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 96/300 (32%), Positives = 160/300 (53%), Gaps = 9/300 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
           +H  VLL++ I  L   P  + +D T G GG++             I +D+D  A+    
Sbjct: 4   EHASVLLDETIRELKIKPDGIYVDGTLGGGGHAFHVLNRLSEKGRYIGIDQDEDAIRAST 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + +  ++++ ++ +  +  +   + D G   VDG++ DLGVSS Q+D  DRGF++++  P
Sbjct: 64  KRLAPFQDKVTIVRDNYVNMPKVLKDLGISRVDGILLDLGVSSFQLDEKDRGFTYREDVP 123

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM      SA D+VN  + ++L  I+   GE+K A  IA  I   R+  P +TT  L
Sbjct: 124 LDMRMDQRQTFSARDIVNGYSEQELFHIIRDYGEDKFAKNIAKHIAAEREKVPIETTGQL 183

Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+  +    +    HPA R+FQA+RI  N E+E L   L    + L   G L +++F
Sbjct: 184 IEVIKHAIPMKVRAVGGHPAKRTFQAIRIECNRELEVLKTSLDQMIELLNPEGRLCIITF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK+ F              I +  + +  + IT+K ++PT+E++  N+R++S+
Sbjct: 244 HSLEDRIVKRAFRKNENPCTCPPNFPICTCGNESKGKVITRKPIIPTEEELMRNKRAKSS 303


>gi|327484905|gb|AEA79312.1| rRNA small subunit methyltransferase H [Vibrio cholerae LMA3894-4]
          Length = 316

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 120/323 (37%), Positives = 174/323 (53%), Gaps = 23/323 (7%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           M+++       H+ VLL + I  L   P  + +D TFG GG+SR+          + ++D
Sbjct: 1   MTASFQ-----HISVLLNESIEGLAIKPDGIYIDGTFGRGGHSRTILAQLGPEGRLYSID 55

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCG 121
           RDP A++  Q+       +F++    FS + +Y         VDGV+FDLGVSS Q+D  
Sbjct: 56  RDPQAIAEAQKI---DDPRFTIIHGPFSGIAEYAQRYDLVGKVDGVLFDLGVSSPQLDDA 112

Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF K GPLDMRM   SG+  S  + QA++ D+T ++   GE+K A RIA AIV+ R
Sbjct: 113 ERGFSFMKDGPLDMRMDPTSGMPVSAWLAQADLDDITWVIREFGEDKHARRIAKAIVEYR 172

Query: 181 QSA---PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
           ++    P   T  L+ LI      S   + HPATR+FQA RI++N+E+EE+   LR A  
Sbjct: 173 ENELNEPLTRTSQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALRGASD 232

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSIT-KKVV 293
            L   G L V+SFHSLEDR+VK+F    S        +  +          +  T  K +
Sbjct: 233 ILAPQGRLSVISFHSLEDRMVKRFMRKESQGPEVPHGLPLTQEQIRALGSAKMKTVGKAL 292

Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316
            P+ ++V  N RSRS+ LR   +
Sbjct: 293 KPSDQEVELNPRSRSSVLRVAEK 315


>gi|257066696|ref|YP_003152952.1| S-adenosyl-methyltransferase MraW [Anaerococcus prevotii DSM 20548]
 gi|256798576|gb|ACV29231.1| S-adenosyl-methyltransferase MraW [Anaerococcus prevotii DSM 20548]
          Length = 306

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 111/307 (36%), Positives = 165/307 (53%), Gaps = 12/307 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
           +H+PVL ++ I  LN  P  + LD T G GG+S+   +       +IA+D+D  A+   +
Sbjct: 4   EHIPVLAKETIENLNINPDGIYLDLTLGKGGHSKMILERLSDKGRLIAIDQDKEAIEAAK 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E +RD+    +   + F   +  + D G   +DG + D+GVSS QID  DRGFS+ K GP
Sbjct: 64  ENLRDF-SNVTFVNSNFENFEKALEDLGLDLIDGALMDIGVSSYQIDNADRGFSYMKDGP 122

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+  + ++A  +VN+ +  +L RI    GEE+ A  IA  IV  R      TT  L
Sbjct: 123 LDMRMNQDNELTAEVIVNEYSQDELERIFFEYGEERFARAIARNIVNLRDEERIDTTFKL 182

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             ++ K++   K+   HP  R FQALRI VN E+E L   +      LK  G + +++FH
Sbjct: 183 REIVAKSI---KSQDAHPEKRVFQALRIEVNRELEVLENTIERVVDHLKKDGRIAIITFH 239

Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK  F   +   +      +    H A  + IT+K V  ++ ++  N RS+ AK
Sbjct: 240 SLEDRIVKNKFKDLARDCICPPEFPVCVCDHRAKIKIITRKPVTASKAELRDNSRSKPAK 299

Query: 311 LRAGMRT 317
           LR G R 
Sbjct: 300 LRVGQRI 306


>gi|75909403|ref|YP_323699.1| S-adenosyl-methyltransferase MraW [Anabaena variabilis ATCC 29413]
 gi|123608960|sp|Q3M882|RSMH_ANAVT RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|75703128|gb|ABA22804.1| methyltransferase [Anabaena variabilis ATCC 29413]
          Length = 305

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 125/329 (37%), Positives = 182/329 (55%), Gaps = 28/329 (8%)

Query: 1   MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN 60
           M+S S K++S  +      H+PVL ++V+  L    G   LDAT G GG+SR   +   +
Sbjct: 1   MKSHSAKSLS--VEEATFSHLPVLPQEVVTGLAVRSGGHYLDATVGGGGHSRLILEAAPD 58

Query: 61  VI--ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQI 118
           V   A+D+D  A++  ++ + ++ EQ    ++ F+  +   P    DGV+ DLGVSS  +
Sbjct: 59  VRLTAVDQDGDALTAAKKELAEFGEQVKFVRSNFAAYE--FPVASFDGVLADLGVSSYHL 116

Query: 119 DCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177
           D  +RGFSF+    LDMRM     +SA+DV+N  +  +L  I    GEE+ + RIA  IV
Sbjct: 117 DTPERGFSFRHQANLDMRMDQRQSLSAADVINDWDEVELANIFFKYGEERLSRRIARRIV 176

Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236
           ++R   PF TT +L+  I  +V    +  RIHPATR FQALRI VN+E++ L   L  A 
Sbjct: 177 EKR---PFHTTTELAEAIASSVPPKYRYARIHPATRVFQALRIVVNDELKSLETFLEKAP 233

Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296
           KAL  GG + ++SFHSLEDRLVK    +                     + +TKK ++ T
Sbjct: 234 KALVPGGRIAIISFHSLEDRLVKHGLRNS-----------------PSLKVLTKKPIIAT 276

Query: 297 QEDVAFNRRSRSAKLRAGMRTVERSIEDD 325
           + ++A N RSRSAKLR   +  E   ED+
Sbjct: 277 EAEIANNPRSRSAKLRIAEKKAEMGQEDN 305


>gi|218131855|ref|ZP_03460659.1| hypothetical protein BACEGG_03477 [Bacteroides eggerthii DSM 20697]
 gi|217986158|gb|EEC52497.1| hypothetical protein BACEGG_03477 [Bacteroides eggerthii DSM 20697]
          Length = 305

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 106/313 (33%), Positives = 161/313 (51%), Gaps = 16/313 (5%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69
           +      H+PVLL   +  +N  P    +D TFG GG+SR        G  ++  D+D  
Sbjct: 1   MKEETTYHIPVLLMPSVDGMNIRPDGTYVDMTFGGGGHSREILSRLGEGGRLLGFDQDED 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFS 126
           A              F+  ++ F  L +++   G   VD ++ DLGVSS   D  +RGFS
Sbjct: 61  AEQNIVN-----DPHFTFVRSNFRYLHNFLRYHGIEQVDAILADLGVSSHHFDDSERGFS 115

Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           F+  G LDMRM+  +G +A+D+VN    + L  I  + GE K + ++A  IVK R +   
Sbjct: 116 FRFDGMLDMRMNKRAGCTAADIVNTYEEERLADIFYLYGELKNSRKLASVIVKARATRQI 175

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            T  D   +I+    F +        + FQALRI VN E+E L + L +A +ALK GG L
Sbjct: 176 STIGDFLDIIKPL--FGREREKKELAKVFQALRIEVNREMEALKEMLYAATEALKPGGRL 233

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           +V+++HSLEDR+VK    + + +  A +    +   P  F+ +  KV+VP + ++  N R
Sbjct: 234 VVITYHSLEDRMVKNIMKTGNIEGKAEKDFFGNIQTP--FRLVNNKVIVPDETEIERNPR 291

Query: 306 SRSAKLRAGMRTV 318
           SRSAKLR   +  
Sbjct: 292 SRSAKLRIAEKIE 304


>gi|308233784|ref|ZP_07664521.1| S-adenosyl-methyltransferase MraW [Atopobium vaginae DSM 15829]
 gi|328943767|ref|ZP_08241232.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Atopobium
           vaginae DSM 15829]
 gi|327491736|gb|EGF23510.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Atopobium
           vaginae DSM 15829]
          Length = 319

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 113/310 (36%), Positives = 177/310 (57%), Gaps = 12/310 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HVPV+L +V   L+  PG V+ D T G  G++ +  +        + +D+D  A+    E
Sbjct: 7   HVPVMLTEVEQELSLKPGDVVCDCTLGGAGHTVALAQHVAPDGLSLGIDQDDAALKAASE 66

Query: 77  TMRDYKEQFS--LFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            M       +    +  FSQL + +      GVD  +FDLGVSS Q+D  +RGFS+ +  
Sbjct: 67  RMDRLAPCVTYKFLKGNFSQLDNLLVQAQVIGVDAFLFDLGVSSPQLDVAERGFSYHEDA 126

Query: 132 PLDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
           PLDMRM    + ++A++V+   N  DLTRIL   G+EK A+RIAH IV++R+ +P +TT 
Sbjct: 127 PLDMRMDPRNNTLTAAEVIQTYNEADLTRILRSYGDEKFAARIAHVIVEQRKLSPIRTTL 186

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L  ++++ +  + + +  HPA ++FQALRI VN+E++ L  GL+ A + L  GG + ++
Sbjct: 187 ELVEVVKRAIPAAARRHGKHPARKTFQALRIEVNHELDVLETGLKQAIRWLNPGGRICII 246

Query: 249 SFHSLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           ++HSLED+LVK   +  +   +      +       V   +TKK +V T  +V  N R+R
Sbjct: 247 AYHSLEDKLVKHILSEYAQGCVCPADFPVCVCGRKPVLDILTKKPLVATPSEVECNPRAR 306

Query: 308 SAKLRAGMRT 317
           SA LRA  RT
Sbjct: 307 SALLRAARRT 316


>gi|291615182|ref|YP_003525339.1| S-adenosyl-methyltransferase MraW [Sideroxydans lithotrophicus
           ES-1]
 gi|291585294|gb|ADE12952.1| S-adenosyl-methyltransferase MraW [Sideroxydans lithotrophicus
           ES-1]
          Length = 308

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 114/305 (37%), Positives = 167/305 (54%), Gaps = 12/305 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H  VLL + +  L      + +D TFG GG+SR   +       ++ALD+DP AV+  +E
Sbjct: 7   HATVLLNEAVEALRVKADGIYVDCTFGRGGHSRLILEKLGERGRLVALDKDPMAVAAARE 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +F L  + F  L + +   G   VDGV+ DLGVSS Q+D   RGFSF+   PL
Sbjct: 67  I---GDARFQLQHSGFEHLGEVLRGLGIEKVDGVLLDLGVSSPQLDDESRGFSFRFDAPL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  S G +A++ +  A+  +L  ++   GEE+ A +IA AIV  RQ     TT+ LS
Sbjct: 124 DMRMDTSRGQTAAEWLATADEGELAEVIRDYGEERFARQIARAIVAARQERAILTTKQLS 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            ++ + V   +  + +PATR+FQA+RI++N E+EEL   L      LKAGG + V+SFHS
Sbjct: 184 DIVAQCVRTREPGK-NPATRTFQAVRIYINRELEELESVLPQCVDHLKAGGRMAVISFHS 242

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ-SITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK F    +      +++          +  +  K +  + E+VA N R+RSA L
Sbjct: 243 LEDRMVKHFMRDMAQGDKLPKNVPIRAVDVPQGKMRLAGKPIYASAEEVAANPRARSAVL 302

Query: 312 RAGMR 316
           R   R
Sbjct: 303 RVAER 307


>gi|220925316|ref|YP_002500618.1| S-adenosyl-methyltransferase MraW [Methylobacterium nodulans ORS
           2060]
 gi|263456456|sp|B8IMX2|RSMH_METNO RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|219949923|gb|ACL60315.1| S-adenosyl-methyltransferase MraW [Methylobacterium nodulans ORS
           2060]
          Length = 339

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 139/316 (43%), Positives = 199/316 (62%), Gaps = 8/316 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPG-KVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73
           +  H+PVLL++V + L    G  +++D TFGAGGY+R+  +   G  VIA+DRDP A++ 
Sbjct: 4   MPPHIPVLLKEVRSALRLGEGPGIVVDGTFGAGGYTRAILEADPGQRVIAIDRDPTAIAT 63

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           G+        +  L Q  F +L   V  +G   VDGVV D+GVSSMQ+D   RGFSF++ 
Sbjct: 64  GRGLAAAMAGRLMLVQGRFGELDRLVRAQGIETVDGVVLDIGVSSMQLDQAQRGFSFRQD 123

Query: 131 GPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           GPLDMRM   G SA+D+VN+A+  +L  I+   GEE++A  +A AI++ R+     TT  
Sbjct: 124 GPLDMRMESGGTSAADLVNEASEAELADIIYHYGEERRARAVARAILEARRRGRIATTAT 183

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ ++   V     + IHPATR+FQALRI VN+E+ EL + L +AE+ L+ GG L VV+F
Sbjct: 184 LAEIVASVVRPEPGSGIHPATRTFQALRIAVNDELGELQRALHAAERILRPGGRLAVVTF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+VK+FF++RSG+ ++    +P    PA   F  +TK  + P++ +   N R+RS
Sbjct: 244 HSLEDRIVKQFFSARSGRAVSASRHLPMAEKPAPRSFTLVTKGPIGPSEAEATANPRARS 303

Query: 309 AKLRAGMRTVERSIED 324
           AKLRAG RT     E 
Sbjct: 304 AKLRAGERTDAPIPEP 319


>gi|114045888|ref|YP_736438.1| S-adenosyl-methyltransferase MraW [Shewanella sp. MR-7]
 gi|123030979|sp|Q0HZS4|RSMH_SHESR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|113887330|gb|ABI41381.1| S-adenosyl-methyltransferase MraW [Shewanella sp. MR-7]
          Length = 313

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 116/307 (37%), Positives = 172/307 (56%), Gaps = 13/307 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H+ VLLE+ +  LN     + +D TFG GG+SR   +       +IA+DRDP A+   ++
Sbjct: 7   HLSVLLEETVGGLNIKDDGIYIDGTFGRGGHSRQILQRLGENGRLIAIDRDPQAIEAAKQ 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              D   +F +    F QL DYV + G    +DGV+ DLGVSS Q+D  +RGFSF + GP
Sbjct: 67  FADD--PRFQIVHGGFGQLADYVEELGLVGKIDGVLLDLGVSSPQLDDAERGFSFLRDGP 124

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G +A+  + +A ++D+  +    GEEK A  IA  I   R   PF  T+DL
Sbjct: 125 LDMRMDNSQGETAAQWLARAEIEDMAWVFKTYGEEKNARHIARCIAADRDKTPFLRTKDL 184

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI +     + N+ HPATR FQA+RI++N+E++++ Q L  A   L   G L ++SFH
Sbjct: 185 ADLIARITKNKERNK-HPATRVFQAIRIYINSELDQIDQALEGALTVLAPQGRLSIISFH 243

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI--TKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK+F    S        +  +       + +    K ++P+ E++  N R+RS+
Sbjct: 244 SLEDRIVKRFIRRHSQGESVPHGLPITEDQINKSRKLRAIGKAIMPSDEEIERNARARSS 303

Query: 310 KLRAGMR 316
            LR   R
Sbjct: 304 VLRIAER 310


>gi|289547926|ref|YP_003472914.1| S-adenosyl-methyltransferase MraW [Thermocrinis albus DSM 14484]
 gi|289181543|gb|ADC88787.1| S-adenosyl-methyltransferase MraW [Thermocrinis albus DSM 14484]
          Length = 290

 Score =  361 bits (926), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 134/307 (43%), Positives = 183/307 (59%), Gaps = 24/307 (7%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCG 74
           I  H PVLLE    LL    GK+ +D T GAGG++R   +      VI +DRDP A+   
Sbjct: 2   IMHHFPVLLETATDLLLGNGGKLYVDCTVGAGGHTRRILEKNPQAYVIGIDRDPQALKLA 61

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +E +R+++ +FSL+ A F  L + +  +GV   DG +FDLG+S MQ+    RGFSFQ+  
Sbjct: 62  EENLREFEGRFSLYHANFVHLDEVLLQEGVEQVDGFLFDLGMSMMQLKSA-RGFSFQRDE 120

Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM  S   +A  VVN+ + +DL RIL   GEE  ASRIA AIV RR+  P +TT +
Sbjct: 121 FLDMRMDPSDPITAYHVVNRYSQRDLERILREYGEEPYASRIARAIVLRRKEKPIETTGE 180

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L  ++   V + +  RIHPATR FQA+RI VN E+  L + L    K L+ GG L+V+SF
Sbjct: 181 LVQIVLSVVPY-RRGRIHPATRVFQAIRIEVNGELRNLKEALPKTLKFLRKGGRLVVISF 239

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDR+VK FF   S ++                + +TKK + P++E++  N  SRSAK
Sbjct: 240 HSLEDRIVKNFFKEHSHEI----------------KPLTKKPITPSREEIEKNPPSRSAK 283

Query: 311 LRAGMRT 317
           LRAG + 
Sbjct: 284 LRAGEKV 290


>gi|258508273|ref|YP_003171024.1| S-adenosyl-methyltransferase MraW [Lactobacillus rhamnosus GG]
 gi|257148200|emb|CAR87173.1| S-adenosyl-methyltransferase MraW [Lactobacillus rhamnosus GG]
 gi|259649590|dbj|BAI41752.1| methyltransferase [Lactobacillus rhamnosus GG]
          Length = 313

 Score =  361 bits (926), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 110/313 (35%), Positives = 156/313 (49%), Gaps = 10/313 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73
           T   H  VLL++  A L        +DAT G GG++R          +IA D+D  A++ 
Sbjct: 2   TEFKHETVLLKEATAALAVKSDGTYVDATLGRGGHTRQIINQLTNGRLIAFDQDEAAIAA 61

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +        Q +L    F  L   + D     VDGV++DLGVSS Q D   RGFS++  
Sbjct: 62  VKRQFGTLPPQLTLVHRNFRDLSAALADLDIRQVDGVLYDLGVSSPQFDDSKRGFSYRFD 121

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM     + A  +VN+    +L RI    GEE  + +IA  I + R  AP  TT 
Sbjct: 122 APLDMRMDQRQTLDAKTIVNEWPYAELVRIFSRYGEEHFSKQIARRIEQARAQAPITTTF 181

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L  LI+  +    +    HPA + FQA+RI VN+E+  L   L  A K +  GG + V+
Sbjct: 182 QLVELIKAGIPAKARRTGGHPAKKVFQAIRIAVNDELSALEASLEQALKLINVGGRISVI 241

Query: 249 SFHSLEDRLVKKFFASRS--GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           +F SLEDRLVK  F   S    V     ++P  A P  +Q + +K ++P+  ++A N R+
Sbjct: 242 TFQSLEDRLVKTMFKEVSTVQDVPRGLPVVPEAAQPH-YQLVNRKPILPSAAELAENHRA 300

Query: 307 RSAKLRAGMRTVE 319
            SAKLR   +   
Sbjct: 301 HSAKLRVIEKIRN 313


>gi|154500741|ref|ZP_02038779.1| hypothetical protein BACCAP_04419 [Bacteroides capillosus ATCC
           29799]
 gi|150270630|gb|EDM97939.1| hypothetical protein BACCAP_04419 [Bacteroides capillosus ATCC
           29799]
          Length = 313

 Score =  361 bits (926), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 114/312 (36%), Positives = 168/312 (53%), Gaps = 8/312 (2%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFA 70
           +      H PVLL++ I  LN  P    +DAT G  G+SR   +      +I +DRD  A
Sbjct: 1   MSEMEFSHKPVLLQECIDGLNIDPTGTYVDATLGRAGHSREIARRLTTGRLICIDRDQAA 60

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSF 127
           +      +    ++ +L    F  L D +    +D   GV+ DLGVSS Q+D   RGFS+
Sbjct: 61  LDAAPGRLEGLMDRVTLVHGNFGDLADILDRLKLDKLSGVLADLGVSSPQLDDASRGFSY 120

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
               PLDMRM  S  ++A  VVN+   +++ RIL   GEE+ A  IA AIV+ R+ AP +
Sbjct: 121 MADAPLDMRMDQSEALTARTVVNEWPQEEIRRILFQFGEERYAPAIAAAIVRAREKAPIE 180

Query: 187 TTQDLSSLIQKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           TT +L  +I+  +       + HPA RSFQA+RI VN+E+    + +++A  AL  GG L
Sbjct: 181 TTLELVDIIRSAMPAHALCEKQHPAKRSFQAIRIAVNDELSAADKLIQAAVPALAPGGRL 240

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
            ++SFHSLEDR+VK  FA+ +          +       V + + KK +V  +E++  N 
Sbjct: 241 AIISFHSLEDRIVKNAFAAFAKGCTCPPDFPVCVCGKKPVIRLVNKKPIVSGEEELNENA 300

Query: 305 RSRSAKLRAGMR 316
           R+RSAKLR   +
Sbjct: 301 RARSAKLRIAEK 312


>gi|117924071|ref|YP_864688.1| S-adenosyl-methyltransferase MraW [Magnetococcus sp. MC-1]
 gi|263456390|sp|A0L5N9|RSMH_MAGSM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|117607827|gb|ABK43282.1| S-adenosyl-methyltransferase MraW [Magnetococcus sp. MC-1]
          Length = 313

 Score =  361 bits (926), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 121/311 (38%), Positives = 169/311 (54%), Gaps = 14/311 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VLL++ +A L P  G   LD TFG GG+SR   +       VI LDRD  A++ GQ 
Sbjct: 5   HTTVLLQETVAALAPQRGGCYLDGTFGGGGHSRLLLEQCAPTGRVIGLDRDADAIANGQA 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +     + +L +A F+Q+ + +    +   DG + DLGVSS Q+D  +RGFSF +SGPL
Sbjct: 65  LVAQMAGRLTLVKAPFAQVAEVLQQLEIAALDGAMLDLGVSSHQLDTAERGFSFIRSGPL 124

Query: 134 DMRMS--CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           DMRM    +  +A+ ++N  +   L  I    GEE+ A RIA  +VK RQ  PF TT DL
Sbjct: 125 DMRMDGDSTTPTAAALLNTLDADALADIFFHYGEERHARRIARMVVKVRQQHPFTTTTDL 184

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           +  I         +RIHPATR FQ LRI VN E+++L Q L      LK GG L V+SFH
Sbjct: 185 AERIAHMTPG--YSRIHPATRVFQGLRIAVNEELQQLEQALSVLIGLLKPGGHLAVISFH 242

Query: 252 SLEDRLVKKFFASRSGKVMAV----RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           SLEDR+VK+ F   +            +  +    A  + +  K + P++ ++  N R+R
Sbjct: 243 SLEDRIVKRLFRDAAKPPEDPVLRGLPIAQAQRPKATLKLVHNKPLTPSEAEIEQNPRAR 302

Query: 308 SAKLRAGMRTV 318
           SAKLR   +  
Sbjct: 303 SAKLRVAQKLA 313


>gi|237720371|ref|ZP_04550852.1| S-adenosyl-methyltransferase mraW [Bacteroides sp. 2_2_4]
 gi|229450122|gb|EEO55913.1| S-adenosyl-methyltransferase mraW [Bacteroides sp. 2_2_4]
          Length = 304

 Score =  361 bits (926), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 107/304 (35%), Positives = 163/304 (53%), Gaps = 16/304 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HVPVLL++ +  +N  P    +D TFG  G+SR        G  ++  D+D  A     E
Sbjct: 9   HVPVLLKESVDGMNIQPDGTYVDVTFGGAGHSREILSRLGEGGRLLGFDQDEDA-----E 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                   F   ++ F  LQ+++       VD ++ DLGVSS   D  +RGFSF+  G L
Sbjct: 64  RNIVNDPHFIFVRSNFRYLQNFLRYHDIEQVDAILADLGVSSHHFDDSERGFSFRFDGAL 123

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  +GI+A+D+VN    + L  +L + GE K + ++A  IVK R     +T  +  
Sbjct: 124 DMRMNKRAGITAADIVNTYEEERLANLLYLYGELKNSRKLASVIVKARSGQNIRTIGEFL 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I+    F +        + FQALRI VN E+E L + L++A +ALK GG L+V+++HS
Sbjct: 184 EIIKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLQAATEALKPGGRLVVITYHS 241

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK    + + +  A      +   P  F+ +  KV+VP + ++  N RSRSAKLR
Sbjct: 242 LEDRMVKNIMKTGNVEGKAESDFFGNLQTP--FRLVNNKVIVPDEAEIERNPRSRSAKLR 299

Query: 313 AGMR 316
              +
Sbjct: 300 IAEK 303


>gi|188585922|ref|YP_001917467.1| S-adenosyl-methyltransferase MraW [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|262825152|sp|B2A2G4|RSMH_NATTJ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|179350609|gb|ACB84879.1| S-adenosyl-methyltransferase MraW [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 315

 Score =  361 bits (926), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 117/307 (38%), Positives = 176/307 (57%), Gaps = 9/307 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
           +H PV++EK I LL P   +VI+D T G  G+S            ++ +D+DP A   G+
Sbjct: 4   NHEPVMIEKTIELLKPESAQVIVDGTMGGAGHSLRIINSLPPEGILVGIDQDPDAYEAGK 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +  Y  +  +F   F  ++      G   VDG++ DLGVSS Q+D  DRGF++Q++ P
Sbjct: 64  SLLEAYGNKAKVFNDNFVNIKHICERIGIHYVDGILLDLGVSSYQLDNKDRGFTYQENAP 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S  I+AS+VVN  + + L  I+   GEEK A RIA  IV+ RQ     TTQ+L
Sbjct: 124 LDMRMDKSQKITASEVVNTYSEQKLAEIIREYGEEKWAQRIAQFIVQARQDQEINTTQEL 183

Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+  +   ++ +  HPA R+FQALRI VN E++ L   ++   + L+  G  +V++F
Sbjct: 184 VKVIKAAIPKGARKSGPHPAKRTFQALRIHVNGELDSLRTAIQEGIRLLRGKGRFVVITF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK+ F   +   +   +  I      A  + +TKK ++P+Q ++  N R+RSA
Sbjct: 244 HSLEDRIVKQEFKKLAQTCVCPTKLPICQCKGEATVKLLTKKPLLPSQGEIEINPRARSA 303

Query: 310 KLRAGMR 316
           KLRA  R
Sbjct: 304 KLRAVER 310


>gi|258620868|ref|ZP_05715902.1| S-adenosyl-methyltransferase mraW [Vibrio mimicus VM573]
 gi|258586256|gb|EEW10971.1| S-adenosyl-methyltransferase mraW [Vibrio mimicus VM573]
          Length = 316

 Score =  361 bits (926), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 120/323 (37%), Positives = 173/323 (53%), Gaps = 23/323 (7%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           M+++       H+ VLL + I  L   P  + +D TFG GG+SR+          + ++D
Sbjct: 1   MTASFQ-----HISVLLNESIEGLAIKPDGIYIDGTFGRGGHSRTILAQLGPQGRLYSID 55

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCG 121
           RDP A++  Q        +F++    FS + +Y         VDGV+FDLGVSS Q+D  
Sbjct: 56  RDPQAIAEAQNI---DDPRFTIIHGPFSGIAEYAQRYDLVGKVDGVLFDLGVSSPQLDDA 112

Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF K GPLDMRM   SG+  S  + QA++ D+T ++   GE+K A RIA AIV+ R
Sbjct: 113 ERGFSFMKDGPLDMRMDPTSGMPVSAWLAQADLDDITWVIREFGEDKHARRIAKAIVEYR 172

Query: 181 QSA---PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
           ++    P   T  L+ LI      S   + HPATR+FQA RI++N+E+EE+   LR A  
Sbjct: 173 ENELNEPLTRTSQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALRGASD 232

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSIT-KKVV 293
            L   G L V+SFHSLEDR+VK+F    S        +  +          +  T  K +
Sbjct: 233 ILAPQGRLSVISFHSLEDRMVKRFMRKESQGPEVPHGIPLTQDQIRALGSAKMKTVGKAL 292

Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316
            P+ ++V  N RSRS+ LR   +
Sbjct: 293 KPSDQEVELNPRSRSSVLRVAEK 315


>gi|127514389|ref|YP_001095586.1| S-adenosyl-methyltransferase MraW [Shewanella loihica PV-4]
 gi|262826527|sp|A3QIM9|RSMH_SHELP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|126639684|gb|ABO25327.1| S-adenosyl-methyltransferase MraW [Shewanella loihica PV-4]
          Length = 313

 Score =  361 bits (926), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 120/307 (39%), Positives = 174/307 (56%), Gaps = 13/307 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H+ VLL + +A LN  P  + +D TFG GG+SR   K       +IA+DRDP A++  ++
Sbjct: 7   HLSVLLTETVAGLNIKPEGIYIDGTFGRGGHSREVLKQLGPNGRLIAIDRDPQAIAAAEQ 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              D   +FS+    F QL  YV D G    +DG++FD GVSS Q+D  +RGFSF + GP
Sbjct: 67  FADDA--RFSIVHGGFGQLAQYVDDLGLRGKIDGILFDFGVSSPQLDDAERGFSFLRDGP 124

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G +A++ + +A ++D+  +    GEEK A  IA  I   R   PF  T++L
Sbjct: 125 LDMRMDNSQGETAAEWLARAEIEDMAWVFKTYGEEKNARHIARCIAADRDKTPFLRTKEL 184

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI +     + N+ HPATR FQA+RI++N+E+E++ Q L  A   L   G L V+SFH
Sbjct: 185 ADLIARVSKSKERNK-HPATRVFQAIRIYINSELEQIDQALEGAVTVLAPQGRLSVISFH 243

Query: 252 SLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK+F    S    V     +  +  +         K + P+ E++  N R+RS+
Sbjct: 244 SLEDRMVKRFIRRHSQGESVPHGLPLTEAEINKTRLLKAVGKAIKPSAEEIDRNARARSS 303

Query: 310 KLRAGMR 316
            LR   R
Sbjct: 304 VLRVAER 310


>gi|238784576|ref|ZP_04628583.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia
           bercovieri ATCC 43970]
 gi|238714542|gb|EEQ06547.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia
           bercovieri ATCC 43970]
          Length = 320

 Score =  361 bits (926), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 120/312 (38%), Positives = 176/312 (56%), Gaps = 15/312 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H  VLL++ +  LN     + +D TFG GG+SR           +IA+DRDP A+   +
Sbjct: 13  KHTSVLLDEAVNGLNIRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDRDPQAIEAAK 72

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +FS+    FS+L  YV +      +DG++ DLGVSS Q+D  +RGFSF + G
Sbjct: 73  SI---TDPRFSIVHGPFSELAHYVRELDLVGRIDGILLDLGVSSPQLDDPERGFSFMRDG 129

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + G+SA++ + +A+  D+  +L   GEE+ A R+A AIV+R  + P   T++
Sbjct: 130 PLDMRMDPTRGLSAAEWLMKASADDIAWVLKTFGEERFAKRLAKAIVERNLTQPMTRTKE 189

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ LI     F + ++ HPATRSFQA+RI++N+E+EE+ + L  A + L   G L V+SF
Sbjct: 190 LADLIANASPFREKHK-HPATRSFQAIRIYINSELEEIERALDGAHEVLADEGRLSVISF 248

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNRRSR 307
           HSLEDR+VK F   RS        +  + A        T K +   +P   +VA N R+R
Sbjct: 249 HSLEDRIVKNFIRQRSRGPQVPAGLPLTEAQLRSMGGRTMKSIGKMMPADAEVAENPRAR 308

Query: 308 SAKLRAGMRTVE 319
           S+ LR   R  E
Sbjct: 309 SSVLRFAERIKE 320


>gi|332712413|ref|ZP_08432340.1| S-adenosyl-methyltransferase MraW [Lyngbya majuscula 3L]
 gi|332348887|gb|EGJ28500.1| S-adenosyl-methyltransferase MraW [Lyngbya majuscula 3L]
          Length = 304

 Score =  361 bits (926), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 119/307 (38%), Positives = 168/307 (54%), Gaps = 22/307 (7%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAV 71
           + T   HV VL +++I  L   PG   LDAT G GG++        +V   A+DRD  A+
Sbjct: 9   NTTPFFHVSVLSQELIEGLAICPGGHYLDATVGGGGHTELILAAAPDVEVTAIDRDANAI 68

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +  +  +  Y  + + +Q  F++ Q    D+  DG++ DLGVSS Q+D  +RGFSF+ + 
Sbjct: 69  AAAKTRLASYNGRVNFWQGNFAEYQP--NDRVFDGIIADLGVSSAQLDLPERGFSFRHAA 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM  S  ++A D++N      L  +    GEE+ + R+A  IV++R   PFQTT +
Sbjct: 127 QLDMRMDQSQSLTAKDIINNWGEVRLADVFYKYGEERLSRRMARRIVEKR---PFQTTTE 183

Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L++ I   V    +  RIHPATR FQALRI VN E+E L   L  A   LK GG L ++S
Sbjct: 184 LANAIASCVPPKYRYGRIHPATRVFQALRIVVNQELESLESFLDIAPHWLKPGGRLGIIS 243

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDR+VK  F   S                ++ + +TKK  V   E++  N R+RSA
Sbjct: 244 FHSLEDRIVKHKFRELSTNC-------------SLLRVLTKKPTVAQAEEIQHNPRARSA 290

Query: 310 KLRAGMR 316
           KLR   R
Sbjct: 291 KLRFAER 297


>gi|157825941|ref|YP_001493661.1| S-adenosyl-methyltransferase MraW [Rickettsia akari str. Hartford]
 gi|167011835|sp|A8GP28|RSMH_RICAH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|157799899|gb|ABV75153.1| S-adenosyl-methyltransferase MraW [Rickettsia akari str. Hartford]
          Length = 306

 Score =  361 bits (926), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 122/306 (39%), Positives = 185/306 (60%), Gaps = 5/306 (1%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQ 75
           +  H+PV+L +V+ +L+P  G+  LD TFGAGGYS++  +     V+ALDRDP  +   +
Sbjct: 2   LQTHIPVMLSEVLKVLDPKGGEFYLDCTFGAGGYSKAILESCDCYVVALDRDPNVIKKAE 61

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           E  ++Y E+F      F+     + +K  DG+V DLGVSSMQ+D  DRGFSF   GPLDM
Sbjct: 62  EIKQNYVERFDFIATNFADSFAKLKEKQFDGIVLDLGVSSMQLDVADRGFSFLHDGPLDM 121

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RMS  G SA + VN    K++  I+   G E  + RIA +IV+ R++A   +T  L+ ++
Sbjct: 122 RMSGQGFSAEEFVNTLEEKEIADIIYKYGNESFSRRIAKSIVEYRKTARIDSTGKLAEIV 181

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           + ++ F K  +I PAT++FQA+RI++N+E+ EL + L + +  LK  G L+VVSFHSLED
Sbjct: 182 RSSIGFRK-GKIDPATKTFQAIRIYINDELGELERFLMNVKNILKKDGRLVVVSFHSLED 240

Query: 256 RLVKKFFASRSGKVMAVRHMIPSN---AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
            ++K FF   S K +A       +         + IT K + P+ +++  N R+RSAKLR
Sbjct: 241 MIIKNFFKENSEKPVARSKYAKDDIIIDPNKWLRIITNKALAPSDKEIRLNIRARSAKLR 300

Query: 313 AGMRTV 318
              + +
Sbjct: 301 TAKKIL 306


>gi|262037275|ref|ZP_06010755.1| S-adenosyl-methyltransferase MraW [Leptotrichia goodfellowii F0264]
 gi|261748703|gb|EEY36062.1| S-adenosyl-methyltransferase MraW [Leptotrichia goodfellowii F0264]
          Length = 307

 Score =  361 bits (926), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 107/305 (35%), Positives = 174/305 (57%), Gaps = 10/305 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H PVL ++V+  +      + +D T G GG++    K  S+   VIA+D+D  A++  ++
Sbjct: 4   HKPVLFDEVMENIIKKEKAIYVDCTLGGGGHTEGILKSSSDDSKVIAIDQDIEAINFAKK 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + +Y  +  +FQ  F  +   V   G   VD ++ D+GVSS Q+D  +RGFS++    L
Sbjct: 64  RLENYGNKMEIFQDNFRNIDTVVYFAGFNKVDRILMDIGVSSNQLDNIERGFSYKYEAKL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+    +SA DVVN+   K++  I+   GEE ++ +IA  IV+ R++   +TT +LS
Sbjct: 124 DMRMNKELSVSAYDVVNKFAEKEIADIIYKYGEEPKSRKIAKNIVEYRKNKNIETTVELS 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            ++ K++   K+ + HP+ R+FQA+RIFVN E+E L + L  A   L  GG L+V++FHS
Sbjct: 184 DIVIKSI--GKSMKKHPSKRTFQAIRIFVNKELEVLEEALDKAVNLLNKGGKLLVITFHS 241

Query: 253 LEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK+ F       +      +      ++ + +TKK +    E++  N R+ SAKL
Sbjct: 242 LEDRMVKEKFRKYENPCVCPPELPVCVCKKESLGKIVTKKPITAKNEELEINNRAHSAKL 301

Query: 312 RAGMR 316
           R   R
Sbjct: 302 RIFER 306


>gi|269798180|ref|YP_003312080.1| S-adenosyl-methyltransferase MraW [Veillonella parvula DSM 2008]
 gi|269094809|gb|ACZ24800.1| S-adenosyl-methyltransferase MraW [Veillonella parvula DSM 2008]
          Length = 310

 Score =  360 bits (925), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 105/307 (34%), Positives = 164/307 (53%), Gaps = 10/307 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS---FCKMGSNVIALDRDPFAVSCGQ 75
           +H  VLL + +  +   P  + +D T G  G++ +          +I LD+D  A+S  +
Sbjct: 4   NHTSVLLHETVDSVVTNPKGIYVDCTLGGAGHAHAVGEMLDPEGMIIGLDQDEDALSVAR 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + + D K Q       FS L++ + + G   VDG +FDLGVSS Q+D  +RGFS+   GP
Sbjct: 64  QRLSDLKCQVLTIPTNFSNLKEALRNAGIYEVDGFIFDLGVSSYQLDTPERGFSYMNDGP 123

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM     ++A ++VN+ + + L +I+   GEE+ A RI   IV+ RQ     TT +L
Sbjct: 124 LDMRMDKDAPLTAEEIVNEYDSEQLLQIIRDYGEERWAKRIVEFIVEARQEKRITTTGEL 183

Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+  +    + +  HPA R+FQA+RI VN E+  L      A   LK  G + V++F
Sbjct: 184 VRIIKNAIPAKARQDGPHPAKRTFQAIRIEVNRELAILHDSFVDAVSMLKPKGKIGVITF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+ K+ F   S   +      +    H AV ++   K + P+  ++  N R+RSA
Sbjct: 244 HSLEDRITKQTFKELSTACICPPQLPMCVCNHKAVVKAKN-KAIEPSIGEIEVNPRARSA 302

Query: 310 KLRAGMR 316
           KLR  ++
Sbjct: 303 KLRVAVK 309


>gi|294793912|ref|ZP_06759049.1| S-adenosyl-methyltransferase MraW [Veillonella sp. 3_1_44]
 gi|294455482|gb|EFG23854.1| S-adenosyl-methyltransferase MraW [Veillonella sp. 3_1_44]
          Length = 311

 Score =  360 bits (925), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 105/307 (34%), Positives = 164/307 (53%), Gaps = 10/307 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS---FCKMGSNVIALDRDPFAVSCGQ 75
           +H  VLL + +  +   P  + +D T G  G++ +          +I LD+D  A+S  +
Sbjct: 5   NHTSVLLRETVDSVVTNPKGIYVDCTLGGAGHAHAVGEMLDPEGMIIGLDQDEDALSVAR 64

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + + D K Q       FS L++ + + G   VDG +FDLGVSS Q+D  +RGFS+   GP
Sbjct: 65  QRLSDLKCQVLTIPTNFSNLKEALQNAGIYEVDGFIFDLGVSSYQLDTPERGFSYMNDGP 124

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM     ++A ++VN+ + + L +I+   GEE+ A RI   IV+ RQ     TT +L
Sbjct: 125 LDMRMDKDAPLTAEEIVNEYDSEQLLQIIRDYGEERWAKRIVEFIVEARQEKRITTTGEL 184

Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+  +    + +  HPA R+FQA+RI VN E+  L      A   LK  G + V++F
Sbjct: 185 VRIIKNAIPAKARQDGPHPAKRTFQAIRIEVNRELAILHDSFVDAVSMLKPKGKIGVITF 244

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+ K+ F   S   +      +    H AV ++   K + P+  ++  N R+RSA
Sbjct: 245 HSLEDRITKQTFKELSTACICPPQLPVCVCNHKAVVKAKN-KAIEPSIGEIEVNPRARSA 303

Query: 310 KLRAGMR 316
           KLR  ++
Sbjct: 304 KLRVAVK 310


>gi|317154466|ref|YP_004122514.1| S-adenosyl-methyltransferase MraW [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316944717|gb|ADU63768.1| S-adenosyl-methyltransferase MraW [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 325

 Score =  360 bits (925), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 120/307 (39%), Positives = 170/307 (55%), Gaps = 10/307 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VLL +VI  L P PG   LD T G GG+S +  +    G+ +  LDRD  A++   E
Sbjct: 11  HTTVLLHEVIEWLRPKPGGRYLDGTLGMGGHSHALLERAGQGAELAGLDRDAQALALAGE 70

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +    ++  LF+  FS+ ++ +   G   VDG V DLGVSS+Q+D  +RGFSF   GPL
Sbjct: 71  RLAGMGDRAHLFRLPFSRFEEALDALGWETVDGAVLDLGVSSLQLDEAERGFSFLSDGPL 130

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM    G SA+D+VN     DL RI+   GE+  A +IA AI++ R       T  L+
Sbjct: 131 DMRMDPDCGPSAADLVNTLKHGDLARIIRTWGEDPLAGKIASAILRARDKEAIMRTLRLA 190

Query: 193 SLIQKTVYFSKNN--RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
            +++        +  R HPATR+FQ LRI VN E EEL   L++    L  G  L ++SF
Sbjct: 191 EIVRLAYPPKMRHTARNHPATRTFQGLRIAVNREAEELEHYLQAIVGRLAPGARLAIISF 250

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR VK+ F + +       H +  +       + +T+K ++P+ +++A N RSRSA
Sbjct: 251 HSLEDRAVKRAFLADAKGCHCPPHQMHCTCNGVPSLKVLTRKPLIPSDDEMARNPRSRSA 310

Query: 310 KLRAGMR 316
           KLR   R
Sbjct: 311 KLRVAER 317


>gi|315181138|gb|ADT88052.1| S-adenosyl-methyltransferase MraW [Vibrio furnissii NCTC 11218]
          Length = 316

 Score =  360 bits (925), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 118/312 (37%), Positives = 168/312 (53%), Gaps = 18/312 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H+ VLL + I  L   P  + +D TFG GG+SR+          + ++DRDP A++  Q+
Sbjct: 7   HISVLLHESIDGLAIKPDGIYIDGTFGRGGHSRTILSQLGPNGRLYSIDRDPQAIAEAQK 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  +F++    FS + +Y         VDGV+FDLGVSS Q+D  +RGFSF K GP
Sbjct: 67  I---DDPRFTIVHGPFSGIAEYAARYELVGKVDGVLFDLGVSSPQLDDAERGFSFMKDGP 123

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---PFQTT 188
           LDMRM   SG+  S  + QA++ D+T ++   GE+K A RIA AIV  R++    P   T
Sbjct: 124 LDMRMDPTSGMPVSAWLAQADLDDITWVIREFGEDKHARRIAKAIVAYRENEENEPLTRT 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ LI      S   + HPATR+FQA RI++N+E+EE+   L+ A   L   G L V+
Sbjct: 184 SQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAASILAPQGRLSVI 243

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVVVPTQEDVAFNR 304
           SFHSLEDR+VK+F    S        +  +                K + P++ +VA N 
Sbjct: 244 SFHSLEDRMVKRFMRKESKGPEVPHGIPLTQEQIRALGSADLRTVGKAIKPSEHEVAMNP 303

Query: 305 RSRSAKLRAGMR 316
           RSRS+ LR   +
Sbjct: 304 RSRSSVLRIAEK 315


>gi|293381714|ref|ZP_06627695.1| S-adenosyl-methyltransferase MraW [Lactobacillus crispatus 214-1]
 gi|290921761|gb|EFD98782.1| S-adenosyl-methyltransferase MraW [Lactobacillus crispatus 214-1]
          Length = 315

 Score =  360 bits (925), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 105/311 (33%), Positives = 161/311 (51%), Gaps = 13/311 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76
            H  VLL + I  L P  G + +DATFG GG ++          ++  D+D +A+   + 
Sbjct: 4   KHTSVLLHETIDNLKPKNGGLYVDATFGGGGDAKYLLSKIDTGTLVGFDQDEYAIKSAKL 63

Query: 77  TMR-----DYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSF 127
                   D + +  L    FS L+  +       G+DG+ +DLGVSS Q D  DRGFS+
Sbjct: 64  NFANLLQLDSEPRLELVHDNFSNLEKDLVKLGYSDGIDGIYYDLGVSSPQFDQADRGFSY 123

Query: 128 QKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           +    LDMRM  S  + A  +VN  + K+L  IL   G+EK + +IAH IV+RR+  P  
Sbjct: 124 RYDARLDMRMDQSQDLDAYQLVNTLSQKELADILYQYGDEKFSRQIAHRIVERRREKPIA 183

Query: 187 TTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           TT +L  +I+  +   ++    HPA +SFQALR+ VN+E++ L   L  A K L+ GG +
Sbjct: 184 TTFELVDVIKDAIPAYARRTGGHPAKKSFQALRVAVNHELDVLQASLEEAIKILRPGGRI 243

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
            V++F S ED++VK+ F   S   +        +      + +  K +V +  ++  N R
Sbjct: 244 SVITFQSHEDKIVKRIFKKYSEVEVPRGMPFIPDGMKPTLRLVNHKPIVASTSELENNNR 303

Query: 306 SRSAKLRAGMR 316
           S SAKLR   +
Sbjct: 304 SHSAKLRVAEK 314


>gi|328471991|gb|EGF42868.1| 16S rRNA m(4)C1402 methyltranserfase [Vibrio parahaemolyticus
           10329]
          Length = 316

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 116/316 (36%), Positives = 170/316 (53%), Gaps = 18/316 (5%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72
               H+ VLL + I  L   P  + +D TFG GG+SR+          + ++DRDP A++
Sbjct: 3   ETFQHISVLLNESIDGLAIKPDGIYIDGTFGRGGHSRTILSKLGPNGRLYSIDRDPQAIA 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128
              +       +F++    FS +  Y  +      VDGV+ DLGVSS Q+D  +RGFSF 
Sbjct: 63  EAGKI---DDPRFTIIHGPFSGMAQYAEEYDLVGKVDGVLLDLGVSSPQLDDAERGFSFM 119

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---P 184
           K GPLDMRM   SGI  S  + +A++ D+T ++   GE+K A RIA AIV+ R++    P
Sbjct: 120 KDGPLDMRMDPTSGIPVSQWLMEADLDDITWVIREFGEDKHARRIARAIVEYRENEENEP 179

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
              T  L+ LI +    S   + HPATR+FQA RI++N+E+EE+   L+ A + L   G 
Sbjct: 180 MVRTGQLAKLISEAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAARILAPEGR 239

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT----KKVVVPTQEDV 300
           L V+SFHSLEDR+VK+F    S        +  + A      S       K + P++ ++
Sbjct: 240 LSVISFHSLEDRMVKRFIRKESKGPEVPHGIPLTEAQIKELGSANMKTVGKAIKPSKHEI 299

Query: 301 AFNRRSRSAKLRAGMR 316
             N RSRS+ LR   +
Sbjct: 300 DMNPRSRSSVLRIAEK 315


>gi|311693447|gb|ADP96320.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [marine
           bacterium HP15]
          Length = 327

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 121/319 (37%), Positives = 178/319 (55%), Gaps = 12/319 (3%)

Query: 9   MSSAIHHTIG---DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVI 62
           M++  +   G    H  VLL+  +  L   P    +D TFG GG+SR           ++
Sbjct: 1   MTTDRNQEAGAAYSHRSVLLDSAVDYLVNDPDGYYVDGTFGRGGHSRLILGRLGPSARLL 60

Query: 63  ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQID 119
            +D+DP A+   +E +     +F  F  +F++L   V  +G   V+GV+ DLGVSS Q+D
Sbjct: 61  GIDKDPEAIRAAKE-LEAQDNRFHSFHGSFAELGAAVVGQGWQTVNGVLLDLGVSSPQLD 119

Query: 120 CGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178
              RGFSF + GPLDMRM+     SA++ +  A+  D+  ++   GEEK + RIA  +V+
Sbjct: 120 DASRGFSFMRDGPLDMRMNTEQSPSAAEWLATADESDIANVIFRYGEEKFSRRIARLLVE 179

Query: 179 RRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           RRQ AP +TT+ L+ L+ + V   K    HPATR+FQA+RIF+N E+E+L  GL+SA   
Sbjct: 180 RRQEAPVETTRQLAELVSEAVP-KKEKHKHPATRTFQAIRIFINRELEDLEVGLQSAVDH 238

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L  GG L+V+SFHSLEDRLVK+F    +      + +  +    A    +  K      E
Sbjct: 239 LAPGGRLVVISFHSLEDRLVKRFMRDLARGPQLPKGVPVTAEQEASDFRLVGKASKAGAE 298

Query: 299 DVAFNRRSRSAKLRAGMRT 317
           +V+ N R+RSA +R   RT
Sbjct: 299 EVSDNVRARSAVMRVLERT 317


>gi|317504120|ref|ZP_07962122.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Prevotella salivae DSM 15606]
 gi|315664792|gb|EFV04457.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Prevotella salivae DSM 15606]
          Length = 316

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 111/312 (35%), Positives = 169/312 (54%), Gaps = 17/312 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA------ 70
           HVPVLL++ +  LN   G V +D TFG GG+S          +++ + D+D  A      
Sbjct: 9   HVPVLLKESVDGLNIQSGGVYVDVTFGGGGHSSEILSRLDEQAHLYSFDQDADAEQNVMR 68

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSF 127
              G E       +F+  ++ F  L++++   GV   DG++ DLGVSS   D   RGFSF
Sbjct: 69  SEVGAERRFVDDSRFTFVRSNFRYLKNWMRYYGVESIDGLLADLGVSSHHFDDESRGFSF 128

Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           +    LDMRM+  +G +A+D+VN  + + L  +  + GE KQ+ R+A A+VK R      
Sbjct: 129 RFDAQLDMRMNKRAGKTAADIVNDYDEEALANLFYLYGEIKQSRRLAAAVVKARSQQHIA 188

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           TTQDL  +++    F +        + FQALRI VN+E++ L + L+SA + LK GG L 
Sbjct: 189 TTQDLLGILEPI--FKREREKKDLAKVFQALRIEVNHEMDALKEMLKSATELLKPGGRLS 246

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+++HSLEDR+VK    + + +   ++        P  F  I  KV+VP++ +   N RS
Sbjct: 247 VITYHSLEDRIVKNIMKTGNVEGKRIQDFYGRIETP--FTLINNKVIVPSENEQQENPRS 304

Query: 307 RSAKLRAGMRTV 318
           RSAKLR   +  
Sbjct: 305 RSAKLRIAEKNE 316


>gi|282859045|ref|ZP_06268181.1| S-adenosyl-methyltransferase MraW [Prevotella bivia JCVIHMP010]
 gi|282588213|gb|EFB93382.1| S-adenosyl-methyltransferase MraW [Prevotella bivia JCVIHMP010]
          Length = 319

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 111/312 (35%), Positives = 174/312 (55%), Gaps = 15/312 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFA---VSC 73
           H+PVLL + I  LN   G + +D TFG GG+S         G ++ + D+D  A   ++ 
Sbjct: 9   HIPVLLNESIEGLNIHTGGIYVDVTFGGGGHSGEILSRLPVGCHLYSFDQDLDAEQNLNH 68

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130
             E  ++  ++F+  ++ F  L++++   GV   DG++ DLGVSS   D   RGFSF+  
Sbjct: 69  LTEKSKELNDKFTFVRSNFRYLKNWMRYYGVEKIDGLLADLGVSSHHFDDETRGFSFRFE 128

Query: 131 -GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM+ +   +AS+++N+    DL  +  + GE KQ+ RIA AIVK R +   +TT
Sbjct: 129 EAPLDMRMNKNAHKTASNILNEYEEDDLANLFYLYGELKQSRRIASAIVKARTNQTIKTT 188

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            D   +++     ++  +     + FQALRI VN+E+E L + L SA + L  GG L V+
Sbjct: 189 TDFLKIVEPLFIRAREKK--DMAKLFQALRIEVNHEMEALKEMLASATELLSPGGRLSVI 246

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           ++HSLEDR+VK F  + + +    +        P  F+ +  KV+V T+E++  N RSRS
Sbjct: 247 TYHSLEDRIVKNFMKAGNAEGKVTQDFFGRIETP--FKLVNNKVIVATEEELEKNPRSRS 304

Query: 309 AKLRAGMRTVER 320
           AKLR   +  E 
Sbjct: 305 AKLRIAEKKDEE 316


>gi|282850409|ref|ZP_06259788.1| S-adenosyl-methyltransferase MraW [Veillonella parvula ATCC 17745]
 gi|282579902|gb|EFB85306.1| S-adenosyl-methyltransferase MraW [Veillonella parvula ATCC 17745]
          Length = 310

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 105/307 (34%), Positives = 164/307 (53%), Gaps = 10/307 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS---FCKMGSNVIALDRDPFAVSCGQ 75
           +H  VLL + +  +   P  + +D T G  G++ +          +I LD+D  A+S  +
Sbjct: 4   NHTSVLLRETVDSVVTNPKGIYVDCTLGGAGHAHAVGEMLDPEGMIIGLDQDEDALSVAR 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + + D K Q       FS L++ + + G   VDG +FDLGVSS Q+D  +RGFS+   GP
Sbjct: 64  QRLSDLKCQVLTIPTNFSNLKEALQNAGIYEVDGFIFDLGVSSYQLDTPERGFSYMNDGP 123

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM     ++A ++VN+ + + L +I+   GEE+ A RI   IV+ RQ     TT +L
Sbjct: 124 LDMRMDKDAPLTAEEIVNEYDSEQLLQIIRDYGEERWAKRIVEFIVEARQEKRITTTGEL 183

Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+  +    + +  HPA R+FQA+RI VN E+  L      A   LK  G + V++F
Sbjct: 184 VRIIKNAIPAKARQDGPHPAKRTFQAIRIEVNRELAILHDSFVDAVSMLKPKGKIGVITF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+ K+ F   S   +      +    H AV ++   K + P+  ++  N R+RSA
Sbjct: 244 HSLEDRITKQTFKELSTACICPPQLPVCVCNHKAVVKAKN-KAIEPSIGEIEVNPRARSA 302

Query: 310 KLRAGMR 316
           KLR  ++
Sbjct: 303 KLRVAVK 309


>gi|237724902|ref|ZP_04555383.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. D4]
 gi|265754710|ref|ZP_06089762.1| methylase MraW [Bacteroides sp. 3_1_33FAA]
 gi|229436640|gb|EEO46717.1| S-adenosyl-methyltransferase MraW [Bacteroides dorei 5_1_36/D4]
 gi|263234824|gb|EEZ20392.1| methylase MraW [Bacteroides sp. 3_1_33FAA]
          Length = 304

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 110/304 (36%), Positives = 165/304 (54%), Gaps = 16/304 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           HVPVLL + +  +N  PG + +DATFG GG+S+         +++ + D+D  A      
Sbjct: 9   HVPVLLNESVDGMNIQPGGIYVDATFGGGGHSKEILSRLDSTAHLYSFDQDEDAEKNIVS 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +F+  ++ F  L +++    V   D ++ DLGVSS   D  +RGFSF+  G L
Sbjct: 69  -----DSRFTFVRSNFRYLSNFLRYYDVEEVDAILADLGVSSHHFDDSERGFSFRFEGKL 123

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  +GI+A+DVVN  + + L  I  + GE K + ++A  IVK R      T  D  
Sbjct: 124 DMRMNKRAGITAADVVNTYDEERLANIFYLYGELKNSRKLASTIVKARGVKQIVTIGDFL 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I+    F +        + FQALRI VN E+E L + L +A KALK GG L+V+++HS
Sbjct: 184 EVIKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLYAATKALKPGGRLVVITYHS 241

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK    + + +  A +    +   P  F+ +  KV+V   E+V  N RSRSAKLR
Sbjct: 242 LEDRMVKNIMKTGNIEGKAEQDFFGNVQTP--FKLVNSKVIVAGNEEVTCNPRSRSAKLR 299

Query: 313 AGMR 316
              +
Sbjct: 300 IAEK 303


>gi|260773502|ref|ZP_05882418.1| S-adenosyl-methyltransferase MraW [Vibrio metschnikovii CIP 69.14]
 gi|260612641|gb|EEX37844.1| S-adenosyl-methyltransferase MraW [Vibrio metschnikovii CIP 69.14]
          Length = 316

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 123/314 (39%), Positives = 172/314 (54%), Gaps = 22/314 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           HV VLL + I  L   P  + +D TFG GG+SR+          + ++DRDP A++   +
Sbjct: 7   HVSVLLHESIDGLAIKPDGIYIDGTFGRGGHSRTILAQLGPEGRLYSIDRDPQAIAEASK 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  +F++    FS + +Y         VDGV+FDLGVSS Q+D  +RGFSF K GP
Sbjct: 67  I---DDPRFTIIHGPFSGIAEYAQRYNLQGQVDGVLFDLGVSSPQLDDAERGFSFMKDGP 123

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS---APFQTT 188
           LDMRM   SG+S +  +  A + D+T ++   GE+K A RIA AIV  R +    P   T
Sbjct: 124 LDMRMDPNSGVSVAQWLLTAELDDITWVIREFGEDKHARRIAKAIVAHRDNPDNEPLTRT 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ LI +    S   + HPATR+FQA RI++N+E+EE+   L+ A   L   G L V+
Sbjct: 184 SQLAKLISEAAPKSFKEKKHPATRTFQAFRIYINSELEEIDIALQGAASILAPQGRLSVI 243

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHP------AVFQSITKKVVVPTQEDVAF 302
           SFHSLEDR+VK+F    S K   V H +P           A  ++I  K + P+  +VA 
Sbjct: 244 SFHSLEDRMVKRFIRKES-KGPDVPHGLPLTQDQIKALGSAKLKAI-GKAIKPSDHEVAL 301

Query: 303 NRRSRSAKLRAGMR 316
           N RSRS+ LR   +
Sbjct: 302 NPRSRSSVLRIAEK 315


>gi|167764163|ref|ZP_02436290.1| hypothetical protein BACSTE_02547 [Bacteroides stercoris ATCC
           43183]
 gi|167698279|gb|EDS14858.1| hypothetical protein BACSTE_02547 [Bacteroides stercoris ATCC
           43183]
          Length = 303

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 107/311 (34%), Positives = 163/311 (52%), Gaps = 16/311 (5%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69
           +      H+PVLL   +  +N  P    +D TFG GG+SR        G  ++  D+D  
Sbjct: 1   MKEETTYHIPVLLMPSVDGMNIRPDGTYVDVTFGGGGHSREILSRLGDGGRLLGFDQDED 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFS 126
           A     E        F+  ++ F  L +++   G   VD V+ DLGVSS   D  +RGFS
Sbjct: 61  A-----ERNIVNDPHFTFVRSNFRYLHNFLRYHGIEQVDAVLADLGVSSHHFDDSERGFS 115

Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           F+  G LDMRM+  +G++A+D+VN  + + L  I  + GE K + ++A  IVK R     
Sbjct: 116 FRFDGALDMRMNKRAGLTAADIVNTYDEERLADIFYLYGELKNSRKLASVIVKARAVQKI 175

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            T  +   +I+    F +        + FQALRI VN E+E L + L +A +ALK GG L
Sbjct: 176 GTIGEFLEIIKPL--FGREREKKELAKVFQALRIEVNREMEALKEMLYAATEALKPGGRL 233

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           +V+++HSLEDR+VK    + + +  A +    +   P  F+ +  KV+VP  +++  N R
Sbjct: 234 VVITYHSLEDRMVKNIMKTGNIEGKAEKDFFGNVQTP--FRLVNNKVIVPDNDEIERNPR 291

Query: 306 SRSAKLRAGMR 316
           SRSAKLR   +
Sbjct: 292 SRSAKLRIAEK 302


>gi|237709504|ref|ZP_04539985.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 9_1_42FAA]
 gi|229456560|gb|EEO62281.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 9_1_42FAA]
          Length = 304

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 108/304 (35%), Positives = 165/304 (54%), Gaps = 16/304 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H+PVLL + +  +N  PG + +DATFG GG+S+         +++ + D+D  A      
Sbjct: 9   HIPVLLNESVDGMNIQPGGIYVDATFGGGGHSKEILSRLDSTAHLYSFDQDEDAEKNIVS 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +F+  ++ F  L +++    V   D ++ DLGVSS   D  +RGFSF+  G L
Sbjct: 69  -----DSRFTFVRSNFRYLSNFLRYYDVEEVDAILADLGVSSHHFDDSERGFSFRFEGKL 123

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  +G++A+DVVN  + + L  I  + GE K + ++A  IVK R      T  D  
Sbjct: 124 DMRMNKRAGMTAADVVNTYDEERLANIFYLYGELKNSRKLASTIVKARGVKQIITIGDFL 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I+    F +        + FQALRI VN E+E L + L +A KALK GG L+V+++HS
Sbjct: 184 EVIKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLYAATKALKPGGRLVVITYHS 241

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK    + + +  A +    +   P  F+ +  KV+V   E+V  N RSRSAKLR
Sbjct: 242 LEDRMVKNIMKTGNIEGKAEQDFFGNVQTP--FKLVNSKVIVAGNEEVTCNPRSRSAKLR 299

Query: 313 AGMR 316
              +
Sbjct: 300 IAEK 303


>gi|291459281|ref|ZP_06598671.1| S-adenosyl-methyltransferase MraW [Oribacterium sp. oral taxon 078
           str. F0262]
 gi|291418535|gb|EFE92254.1| S-adenosyl-methyltransferase MraW [Oribacterium sp. oral taxon 078
           str. F0262]
          Length = 308

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 108/305 (35%), Positives = 165/305 (54%), Gaps = 9/305 (2%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRD 80
           LL + I  L      V +D T G GG++ S C+       +I +D+D  A+    E ++D
Sbjct: 2   LLRETIEGLAIRADGVYVDGTLGGGGHALSICERLSGRGRLIGIDQDGAAIEAASERLKD 61

Query: 81  YKEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
           Y+++  + +  +  + + +     + VDG+  DLGVSS Q+D G+RGFS++    LDMRM
Sbjct: 62  YRDRAVIVRGNYEDIAEILMRLQIERVDGICLDLGVSSYQLDEGERGFSYRTDAALDMRM 121

Query: 138 SCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
              G  +A+D+VN  + + L RI+   GE+  A  IA  IV+ R+    +TT +LS +I 
Sbjct: 122 DQRGERTAADIVNSYSEEALFRIIRDYGEDHFARNIAKHIVQYREKKRIETTLELSGIIS 181

Query: 197 KTVYFSKNN-RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
             +         HPA RSFQA+RI +N E+E L   L      L  GG L V+SFHSLED
Sbjct: 182 GAIPARVRALSGHPAKRSFQAIRIELNRELEVLENTLDRMIDLLSEGGRLCVISFHSLED 241

Query: 256 RLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           R+VK  F +     +      + S    +    +TKK ++P++E++  NRRS+SAKLR  
Sbjct: 242 RIVKSKFRTAEKPCICPPDFPVCSCGRKSRGIVLTKKPILPSEEELLENRRSQSAKLRIF 301

Query: 315 MRTVE 319
            +  E
Sbjct: 302 EKRTE 306


>gi|325478632|gb|EGC81744.1| S-adenosyl-methyltransferase MraW [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 306

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 106/307 (34%), Positives = 167/307 (54%), Gaps = 12/307 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
           +H+PV+  + I  LN     V LD T G GG+S+   +  S+   +IALD+D  A+   +
Sbjct: 4   EHIPVIATETIENLNIKSDGVYLDLTLGKGGHSKMILERLSDEGTLIALDQDKEAIEAAK 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E ++D+        + F ++ + + D G   +DG + D+GVSS QID  DRGFS+ K GP
Sbjct: 64  ENLKDF-SNVIFINSNFEKIDEVLRDLGFDYIDGALMDIGVSSYQIDNADRGFSYMKDGP 122

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+  + ++A  +VN+ +  +L +I    GEEK +  IA  I+K R+     TT  L
Sbjct: 123 LDMRMNQENELTAEIIVNEYSQDELEKIFFEYGEEKFSKLIAKNIIKAREDYRIDTTFKL 182

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             ++ K++   K+N  HP  R FQALRI VN E++ L   +      L     L +++FH
Sbjct: 183 KDIVTKSI---KSNEAHPEKRVFQALRIEVNRELDVLKDTIDKVVDHLNKDERLAIITFH 239

Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK  F   +   +      +    H A  + IT+K +  +++++  N R++ AK
Sbjct: 240 SLEDRIVKNKFKDLATDCICPPEFPVCVCNHKAKVKIITRKPITASKKELKENSRAKPAK 299

Query: 311 LRAGMRT 317
           LR   R 
Sbjct: 300 LRVCQRI 306


>gi|325205481|gb|ADZ00934.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis
           M04-240196]
          Length = 328

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 118/323 (36%), Positives = 174/323 (53%), Gaps = 13/323 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           MS A  +    H+ VLL + +  L      V +D TFG GG+SR           +I  D
Sbjct: 1   MSGAESY---RHITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFD 57

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGD 122
           +DP A++  +E +    ++  +    F+  Q  +   G   VDG +FDLG+SS QID G 
Sbjct: 58  KDPQAIAVAEE-LARSDKRVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGS 116

Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF+   PLDMRM  + G+SA++ +  A+ +DL  ++   GEE+ + +IA AIV +R 
Sbjct: 117 RGFSFRFDAPLDMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRA 176

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            +P  TT+ L+ ++ + V   +  +  PATR+FQA+RIF+N E+EE+   L      LK 
Sbjct: 177 ESPIDTTRKLAQIVAQNVRTRERGQ-DPATRTFQAIRIFINRELEEVGAVLPQVMCRLKE 235

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDV 300
           GG L V++FHSLEDR+VK+F    S      R      A  P     I  + + P + ++
Sbjct: 236 GGRLAVIAFHSLEDRIVKQFVKKYSQHAPLPRWAAVREADLPEPPLKIVGRALKPGEAEI 295

Query: 301 AFNRRSRSAKLRAGMRTVERSIE 323
           A N R+RSA LR   RT     E
Sbjct: 296 AANPRARSAVLRVAERTAGPIPE 318


>gi|322834428|ref|YP_004214455.1| S-adenosyl-methyltransferase MraW [Rahnella sp. Y9602]
 gi|321169629|gb|ADW75328.1| S-adenosyl-methyltransferase MraW [Rahnella sp. Y9602]
          Length = 313

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 123/314 (39%), Positives = 181/314 (57%), Gaps = 19/314 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H  VLL++ +  LN     + +D TFG GG+SR           ++A+DRDP A+   +
Sbjct: 6   KHTSVLLDEAVNGLNIRQDGIYIDGTFGRGGHSRLILSQLGPDGRLLAIDRDPQAIKAAE 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +FS+    FS L DYV D+G    +DGV+ DLGVSS Q+D  +RGFSF + G
Sbjct: 66  SI---DDPRFSIVHGPFSDLADYVRDRGLEGKIDGVLLDLGVSSPQLDDPERGFSFMRDG 122

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + G SA++ + +A  +D+  +L   GEE+ A RIA AIV+R +  P   T++
Sbjct: 123 PLDMRMDPTRGYSATEWLMKAEAEDIAWVLKTFGEERFAKRIARAIVERNRELPMTRTKE 182

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ LI       + ++ HPATRSFQA+RI++N+E+EE+ + L  A + L   G L V+SF
Sbjct: 183 LADLIANASPVREKHK-HPATRSFQAIRIYINSELEEIERALDGALEILAPEGRLSVISF 241

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305
           HSLEDR+VK+F    S        +  + A  A       +S+ K  ++P++ +VA N R
Sbjct: 242 HSLEDRIVKRFIRQHSRGAQVPAGIPMTEAQIAELGGRSLKSVGK--MMPSEAEVAENPR 299

Query: 306 SRSAKLRAGMRTVE 319
           +RS+ LR   RT  
Sbjct: 300 ARSSVLRFAERTTA 313


>gi|123441024|ref|YP_001005013.1| S-adenosyl-methyltransferase MraW [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|263504660|sp|A1JJI5|RSMH_YERE8 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|122087985|emb|CAL10773.1| conserved hypothetical protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 320

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 120/314 (38%), Positives = 176/314 (56%), Gaps = 19/314 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H  VLL++ +  LN     + +D TFG GG+SR           +IA+DRDP A+   +
Sbjct: 13  KHTSVLLDEAVNGLNIRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDRDPQAIEAAK 72

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +FS+    FS L  YV +      ++GV+ DLGVSS Q+D  +RGFSF + G
Sbjct: 73  SI---TDPRFSIVHGPFSDLAHYVRELNLVGRINGVLLDLGVSSPQLDDPERGFSFMRDG 129

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + GISA++ + +A+  D+  +L   GEE+ A R+A AIV+R  + P   T++
Sbjct: 130 PLDMRMDPTRGISAAEWLMKASADDIAWVLKTFGEERFAKRLAKAIVERNLTQPMTRTKE 189

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ LI     F + ++ HPATRSFQA+RI++N+E+EE+ + L  A + L   G L V+SF
Sbjct: 190 LADLIANASPFREKHK-HPATRSFQAIRIYINSELEEIERALDGALEVLAPEGRLSVISF 248

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNRR 305
           HSLEDR+VK F    S        +  + A          +S+ K  ++P   +VA N R
Sbjct: 249 HSLEDRIVKNFIRHHSRGPQVPAGLPLTEAQLRSMGGRTLKSVGK--MMPPDAEVAENPR 306

Query: 306 SRSAKLRAGMRTVE 319
           +RS+ LR   R  E
Sbjct: 307 ARSSVLRFAERIKE 320


>gi|332557530|ref|ZP_08411852.1| 16S rRNA m(4)C1402 methyltranserfase [Rhodobacter sphaeroides WS8N]
 gi|332275242|gb|EGJ20557.1| 16S rRNA m(4)C1402 methyltranserfase [Rhodobacter sphaeroides WS8N]
          Length = 331

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 144/331 (43%), Positives = 200/331 (60%), Gaps = 5/331 (1%)

Query: 11  SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPF 69
           +        H+PVLL  ++A + P      LD TFGAGGY+R   + G+  VI +DRDP 
Sbjct: 2   AEADTERRPHIPVLLRPLLAAVAPVE-GTWLDGTFGAGGYARGLLEAGADRVIGVDRDPL 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
           A+        DY ++  L   TFSQL  +     +DGVV DLGVSSMQ+D  +RGFSFQK
Sbjct: 61  ALKMASGWAGDYGDRLRLVAGTFSQLDSHAGAP-LDGVVLDLGVSSMQLDLAERGFSFQK 119

Query: 130 SGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            GPLDMRMS  G SA+D+VN A+ + L  IL   GEE+ + RIA AIV+ R +AP   T 
Sbjct: 120 DGPLDMRMSQEGESAADLVNTASEETLADILYHYGEERASRRIARAIVEARAAAPITRTL 179

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            L+ ++ + +   K  ++HPATRSFQA+RI VN E  EL +GL +AE+AL+ GG L VV+
Sbjct: 180 ALAEIVARCLPRPKPGQMHPATRSFQAIRIAVNAEFSELVEGLEAAERALRHGGRLAVVT 239

Query: 250 FHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK+F   RS G+    R+   + A    F    ++ + P + ++A N R+RS
Sbjct: 240 FHSLEDRIVKRFLQLRSGGEGQGNRYAPETRADAPRFTLPLRRAISPDEAELAENPRARS 299

Query: 309 AKLRAGMRTVERSIE-DDSFVHLPRLPTLSQ 338
           A+LR G+RT   + + D   +  P +P   +
Sbjct: 300 ARLRVGVRTDAPAGKVDPQALGTPLIPKKGR 330


>gi|46199019|ref|YP_004686.1| mraW protein [Thermus thermophilus HB27]
 gi|85701363|sp|P62476|RSMH_THET2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|46196643|gb|AAS81059.1| mraW protein [Thermus thermophilus HB27]
          Length = 285

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 125/300 (41%), Positives = 180/300 (60%), Gaps = 26/300 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           HVPVL ++ + LL   PG V +DAT G  G++R   + G  VI LD+DP AV+  +    
Sbjct: 6   HVPVLYQEALDLLAVRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKGL-- 63

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
            +    ++ Q  F  L+ ++   GV   DG++ DLGVSS  +D   RGFS+QK GPLDMR
Sbjct: 64  -HLPGLTVVQGNFRHLKRHLAALGVERVDGILADLGVSSFHLDDPSRGFSYQKEGPLDMR 122

Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
           M   G +A +VVN+  ++ L R+L  LGEE QA RIA AIV  R+ AP +TT  L+ +++
Sbjct: 123 MGLEGPTAKEVVNRLPLEALARLLRELGEEPQAYRIARAIVAAREKAPIETTTQLAEIVR 182

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
           K V F +    HPA ++FQALRI+VN+E+  L + L  A + L   G L+V++FHSLEDR
Sbjct: 183 KAVGFRRAG--HPARKTFQALRIYVNDELNALKEFLEQAAEVLAPRGRLVVIAFHSLEDR 240

Query: 257 LVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           +VK+F                     +  + +TKK +VP++++ A N R+RSAKLRA  +
Sbjct: 241 VVKRFLRE------------------SGLKVLTKKPLVPSEKEAAQNPRARSAKLRAAEK 282


>gi|294788560|ref|ZP_06753802.1| S-adenosyl-methyltransferase MraW [Simonsiella muelleri ATCC 29453]
 gi|294483437|gb|EFG31122.1| S-adenosyl-methyltransferase MraW [Simonsiella muelleri ATCC 29453]
          Length = 320

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 111/313 (35%), Positives = 168/313 (53%), Gaps = 11/313 (3%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFA 70
             +   H+ VLL + +  LN     V +D TFG GG+SR           +I  D+DP A
Sbjct: 3   QPSEFKHITVLLHEAVDALNIRADGVYVDGTFGRGGHSRLILSRLGESGRLIVFDKDPQA 62

Query: 71  VSCGQETMRDYKEQFSLFQATFSQ----LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126
           +   QE +    ++  +    FS     L++ +    +DG +FDLG+SS QID   RGFS
Sbjct: 63  IEVAQE-LAKQDKRVKVIHNGFSHFQVALKNDLGLNHIDGALFDLGISSPQIDDASRGFS 121

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           F+   PLDMRM  + G SA+D +  A+ +++  ++   GEE+ + +IA AIV +R+ +P 
Sbjct: 122 FRFDAPLDMRMDTTRGQSAADWLAIADEQEIHEVIKNYGEERFSRQIARAIVTQREDSPI 181

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            TT  L+ +  + V   +  +  PATR+FQA+RIF+N E++E+   L      L  GG L
Sbjct: 182 ITTNQLAKITAQVVRTRERGQ-DPATRTFQAIRIFINRELDEIQAVLPQVVAHLNIGGRL 240

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
            V++FHSLEDRLVK+F  + S      +   I     P        K + P+ +++A N 
Sbjct: 241 AVIAFHSLEDRLVKQFIRTHSTHAPLPKWAAIRETDLPQPPLLAVGKAIKPSDDEIAHNP 300

Query: 305 RSRSAKLRAGMRT 317
           R+RSA LR   RT
Sbjct: 301 RARSAVLRIAERT 313


>gi|209559798|ref|YP_002286270.1| S-adenosyl-methyltransferase MraW [Streptococcus pyogenes NZ131]
 gi|262827234|sp|B5XML3|RSMH_STRPZ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|209540999|gb|ACI61575.1| S-adenosyl-methyltransferase mraW [Streptococcus pyogenes NZ131]
          Length = 316

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 102/320 (31%), Positives = 168/320 (52%), Gaps = 15/320 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           M+   H     HV VLL + + +L+  P  + +DAT G  G+S           ++   D
Sbjct: 1   MTKEFH-----HVTVLLHETVDMLDIKPDGIYVDATLGGSGHSAYLLSKLGEEGHLYCFD 55

Query: 66  RDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDC 120
           +D  A+   Q T++ Y  K Q +  +  F  L+  +   GVD   G+++DLGVSS Q+D 
Sbjct: 56  QDQKAIDNAQVTLKSYIDKGQVTFIKDNFRHLKARLTALGVDEIDGILYDLGVSSPQLDE 115

Query: 121 GDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS+++  PLDMRM    + +A +VVN     DL +I    GE+K + +IA  I + 
Sbjct: 116 RERGFSYKQDAPLDMRMDRQSLLTAYEVVNTYPFNDLVKIFFKYGEDKFSKQIARKIEQA 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R   P + T +L+ LI+      +   + HPA + FQA+RI VN+E+    + ++ A + 
Sbjct: 176 RAIKPIEATTELAELIKAAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQDAMEL 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L   G + V++FHSLEDRL K+ F   S   +     +        F+ +++K ++P+  
Sbjct: 236 LALDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPLIPEDMKPKFELVSRKPILPSHS 295

Query: 299 DVAFNRRSRSAKLRAGMRTV 318
           ++  N+R+ SAKLR   +  
Sbjct: 296 ELTANKRAHSAKLRVAKKIR 315


>gi|120597213|ref|YP_961787.1| S-adenosyl-methyltransferase MraW [Shewanella sp. W3-18-1]
 gi|146291586|ref|YP_001182010.1| S-adenosyl-methyltransferase MraW [Shewanella putrefaciens CN-32]
 gi|262826531|sp|A4Y2M8|RSMH_SHEPC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262826576|sp|A1REY8|RSMH_SHESW RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|120557306|gb|ABM23233.1| S-adenosyl-methyltransferase MraW [Shewanella sp. W3-18-1]
 gi|145563276|gb|ABP74211.1| S-adenosyl-methyltransferase MraW [Shewanella putrefaciens CN-32]
          Length = 313

 Score =  360 bits (924), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 116/307 (37%), Positives = 170/307 (55%), Gaps = 13/307 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H+ VLL + +  LN     + +D TFG GG+SR   +       +IA+DRDP A+   ++
Sbjct: 7   HLSVLLAETVGGLNIKDDGIYIDGTFGRGGHSRQILQRLGDNGRLIAIDRDPQAIEAAKQ 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              D   +F +    F QL DYV D G    +DGV+ DLGVSS Q+D  +RGFSF + GP
Sbjct: 67  FSDD--PRFQIVHGGFGQLADYVEDLGLVGKIDGVLLDLGVSSPQLDDAERGFSFLRDGP 124

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G +A+  +  A ++D+  +    GEEK A  IA  I   R   PF  T+DL
Sbjct: 125 LDMRMDNSQGQTAAQWLAHAEIEDMAWVFKTYGEEKNARHIARCIAADRDKTPFLRTKDL 184

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI +     + N+ HPATR FQA+RI++N+E++++ Q L  A   L   G L ++SFH
Sbjct: 185 ADLIARITKNKERNK-HPATRVFQAIRIYINSELDQIDQALEGALAVLAPQGRLSIISFH 243

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI--TKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK+F    S        +  +       + +    K ++P+ E++  N R+RS+
Sbjct: 244 SLEDRIVKRFIRRHSQGESVPYGLPITEDQINKSRKLRAIGKAIMPSDEEIERNARARSS 303

Query: 310 KLRAGMR 316
            LR   R
Sbjct: 304 VLRIAER 310


>gi|297194883|ref|ZP_06912281.1| S-adenosylmethionine-dependent methyltransferase [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297152504|gb|EFH31797.1| S-adenosylmethionine-dependent methyltransferase [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 318

 Score =  360 bits (924), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 124/310 (40%), Positives = 183/310 (59%), Gaps = 10/310 (3%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           HVPV+L++ + +L PA   PG V++D T G GG+S +  +      ++ALDRD  A+   
Sbjct: 6   HVPVMLQRCLDMLAPALRTPGGVVVDCTLGLGGHSEALLEQFPQTRLVALDRDTEALRLS 65

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            E +  + E+ +L  A + +L D +   G   V GV+FDLGVSSMQ+D  DRGF++ +  
Sbjct: 66  GERLARFGERATLVHAVYDELPDVLDRLGIPRVQGVLFDLGVSSMQLDEADRGFAYAQDA 125

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + G+SA++V+N     +L RIL   GEEKQA RI  AIV+ R+  PF  +  
Sbjct: 126 PLDMRMDQTTGMSAAEVLNTYPPGELVRILRAYGEEKQAKRIVSAIVREREKEPFTNSAR 185

Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  LI+  +   +K    +PA R+FQALRI VN E+  L + + +A  AL  GG + V+S
Sbjct: 186 LVELIRDALPQAAKRTGGNPAKRTFQALRIEVNGELAVLERAVPAAVSALAVGGRIAVLS 245

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           +HSLEDRLVK+ FA+ +         +    +    + +T+   +PT E++A NRR+  A
Sbjct: 246 YHSLEDRLVKQVFAAGAANTAPPGLPVVPEQYQPRLKLLTRGAELPTDEEIAENRRAAPA 305

Query: 310 KLRAGMRTVE 319
           +LR   R  E
Sbjct: 306 RLRGAERIRE 315


>gi|254291793|ref|ZP_04962578.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
 gi|150422305|gb|EDN14267.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
          Length = 316

 Score =  360 bits (924), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 120/323 (37%), Positives = 174/323 (53%), Gaps = 23/323 (7%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           M+++       H+ VLL + I  L   P  + +D TFG GG+SR+          + ++D
Sbjct: 1   MTASFQ-----HISVLLNESIEGLAIKPDGIYIDGTFGRGGHSRTILAQLGPEGRLYSID 55

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCG 121
           RDP A++  Q+       +F++    FS + +Y         VDGV+FDLGVSS Q+D  
Sbjct: 56  RDPQAIAEAQKI---DDPRFTIVHGPFSGIAEYAQRYDLVGKVDGVLFDLGVSSPQLDDA 112

Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF K GPLDMRM   SG+  S  + QA++ D+T ++   GE+K A RIA AIV+ R
Sbjct: 113 ERGFSFMKDGPLDMRMDPTSGMPVSAWLAQADLDDITWVIREFGEDKHARRIAKAIVEYR 172

Query: 181 QSA---PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
           ++    P   T  L+ LI      S   + HPATR+FQA RI++N+E+EE+   LR A  
Sbjct: 173 ENELNEPLTRTSQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALRGASD 232

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSIT-KKVV 293
            L   G L V+SFHSLEDR+VK+F    S        +  +          +  T  K +
Sbjct: 233 ILAPQGRLSVISFHSLEDRMVKRFMRKESLGPEVPHGLPLTQEQIRALGSAKMKTVGKAL 292

Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316
            P+ ++V  N RSRS+ LR   +
Sbjct: 293 KPSDQEVELNPRSRSSVLRVAEK 315


>gi|262831538|sp|Q1QNV1|RSMH_NITHX RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 332

 Score =  360 bits (924), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 150/325 (46%), Positives = 201/325 (61%), Gaps = 7/325 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQETM 78
           HVPVL  + +A+L P  G V +DATFGAGGYSR+      + VI +DRD  A++ G   +
Sbjct: 8   HVPVLGREAVAMLAPRAGGVYVDATFGAGGYSRAILAVADTRVIGIDRDRSAIAGGFALV 67

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
            +   + +L +  FS L      +G   VDG+V D+GVSSMQ+D  DRGFSF+  GPLDM
Sbjct: 68  EESGGRLTLVEDRFSNLAAVCAAEGADVVDGIVMDVGVSSMQLDEADRGFSFRLDGPLDM 127

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RMS  G +A+DVV +A+  DL  I+ I GEE+++  +A AIV  R+ AP  TT+ L+ ++
Sbjct: 128 RMSGHGPTAADVVARASETDLANIIYIFGEERRSRAVARAIVAARRDAPVATTRALADIV 187

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
            K V  +K + IHPATR+FQALRIFVN E++EL   L +AE+ L+ GG L VVSFHSLED
Sbjct: 188 SKVV-RAKPHEIHPATRTFQALRIFVNEELDELIAALAAAERVLRPGGRLAVVSFHSLED 246

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           R+VK FFA R       RH          F  +T++ V   QE+V+ N R+RSAKLRA  
Sbjct: 247 RIVKNFFALRGKTGGGSRHRPEIERAAPSFAILTRRPVTAGQEEVSANPRARSAKLRAAE 306

Query: 316 RTVERSIEDDSFVHLPRLPTLSQFR 340
           RT   +  DD     P  P+L+   
Sbjct: 307 RTAAPATADDGES--PGWPSLANVM 329


>gi|254509146|ref|ZP_05121246.1| S-adenosyl-methyltransferase MraW [Vibrio parahaemolyticus 16]
 gi|219547943|gb|EED24968.1| S-adenosyl-methyltransferase MraW [Vibrio parahaemolyticus 16]
          Length = 316

 Score =  360 bits (924), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 118/316 (37%), Positives = 169/316 (53%), Gaps = 18/316 (5%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72
               H+ VLL + I  L   P  + +D TFG GG+SR+          + ++DRDP A++
Sbjct: 3   EAFKHISVLLHESIDGLAIKPDGIYIDGTFGRGGHSRTILSQLGDNGRLYSIDRDPQAIA 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128
              E  +    +F++    FS + +Y  + G    VDGV+ DLGVSS Q+D  +RGFSF 
Sbjct: 63  ---EAAKIDDPRFTIIHGPFSGMAEYAAEYGLVGKVDGVLLDLGVSSPQLDDAERGFSFM 119

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---P 184
           K GPLDMRM   SGI  S  + +A++ D+T ++   GE+K A RIA AIV  R++    P
Sbjct: 120 KDGPLDMRMDPTSGIPVSQWLMEADLDDITWVIREFGEDKHARRIAKAIVAYRENEENEP 179

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
              T  L+ LI      S   + HPATR+FQA RI++N+E+EE+   L+ A   L   G 
Sbjct: 180 LTRTGQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAASILAPEGR 239

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV----VVPTQEDV 300
           L V+SFHSLEDR+VK+F    S        +  +        S   K     + P++ +V
Sbjct: 240 LSVISFHSLEDRMVKRFIRKESKGPEVPHGIPMTEEQIKALGSANMKPIGKAIKPSKNEV 299

Query: 301 AFNRRSRSAKLRAGMR 316
             N RSRS+ LR   +
Sbjct: 300 EVNARSRSSVLRIAEK 315


>gi|302877570|ref|YP_003846134.1| S-adenosyl-methyltransferase MraW [Gallionella capsiferriformans
           ES-2]
 gi|302580359|gb|ADL54370.1| S-adenosyl-methyltransferase MraW [Gallionella capsiferriformans
           ES-2]
          Length = 311

 Score =  360 bits (924), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 115/305 (37%), Positives = 168/305 (55%), Gaps = 12/305 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H  VLL + +  L   P  + LD TFG GG+S    +       +IALD+D  AVS G E
Sbjct: 7   HTTVLLAEAVEALAIKPDGIYLDCTFGRGGHSALILQQLGANGRLIALDKDMTAVSHGLE 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +F +  + F+ L + + + GV   DG++ DLGVSS Q+D   RGFSF+   PL
Sbjct: 67  W---QDARFKMVHSGFTHLAEVLRELGVERVDGILLDLGVSSPQLDEAARGFSFRFDAPL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  S G +A+  +  A+   LT ++   GEE+ A +IA AI+  R+  P QTT  L 
Sbjct: 124 DMRMDNSRGPTAAQWLETADEGLLTEVIRDYGEERFAKQIARAIIVAREIQPIQTTGQLV 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            L+ KTV  ++    +PATR+FQA+RI++N E+EEL Q L      LK GG L V+SFHS
Sbjct: 184 ELVGKTV-RTRETGKNPATRTFQAIRIYLNQELEELKQVLPQCVTHLKPGGRLAVISFHS 242

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK F    +      R++    +     +  +  + +   ++++  N R+RSA +
Sbjct: 243 LEDRMVKHFIRDMNDADKLPRNVPIRASEVPKGKLNLIGRAIKAGKDELNSNPRARSAVM 302

Query: 312 RAGMR 316
           R   R
Sbjct: 303 RVAER 307


>gi|283769659|ref|ZP_06342555.1| S-adenosyl-methyltransferase MraW [Bulleidia extructa W1219]
 gi|283103927|gb|EFC05313.1| S-adenosyl-methyltransferase MraW [Bulleidia extructa W1219]
          Length = 318

 Score =  360 bits (924), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 109/313 (34%), Positives = 168/313 (53%), Gaps = 10/313 (3%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74
           + +H+ VLLE+ +  L   P  + +DAT G  G+S    K     ++ + D+D  A+   
Sbjct: 1   MSEHISVLLEESLEALKILPEGIYVDATLGRAGHSVEILKKLTTGHLYSFDKDQQAIEEC 60

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
              ++ Y E+ +L  A FS++ + +   GV   DG++FDLGVSS Q D GDRGFS++   
Sbjct: 61  SLKLKSYAEKVTLIHADFSKMMEKLQSLGVEKVDGILFDLGVSSPQFDQGDRGFSYRFEA 120

Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM  S  + A  VVN  + K+L  I     EE+ A  IA+ I + R+  P +TT +
Sbjct: 121 RLDMRMDQSQDLDAYQVVNHYSAKELKDIFLKYSEERYAPMIANKICEIRERKPIETTFE 180

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L ++++  +   +   + HPA + FQA+R+ VN+E+  L Q L  A   LK GG L V+S
Sbjct: 181 LVNIVKSCLPAKELRKKKHPAKQVFQAIRMEVNDELGTLEQALNQACSLLKEGGRLAVIS 240

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           FHS+EDR+VK               +     +   A F+ + KK ++  + ++  N R+ 
Sbjct: 241 FHSIEDRMVKTILKKHCEIEKPDPRLPIRFEDIQQADFRLVYKKPILAKEAELENNHRAH 300

Query: 308 SAKLRAGM-RTVE 319
           SAKLR    RT E
Sbjct: 301 SAKLRVIEKRTKE 313


>gi|325134878|gb|EGC57511.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis M13399]
          Length = 328

 Score =  360 bits (924), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 118/323 (36%), Positives = 175/323 (54%), Gaps = 13/323 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           MS A  +    H+ VLL + +  L      V +D TFG GG+SR           +I  D
Sbjct: 1   MSGAESY---RHITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFD 57

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGD 122
           +DP A++  +E +    ++  +    F+  Q  +   G   VDG +FDLG+SS QID G 
Sbjct: 58  KDPQAIAVAEE-LARSDKRVGVVHGGFASFQAALDGLGIGKVDGALFDLGISSPQIDDGS 116

Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF+   PLDMRM  + G+SA++ +  A+ +DL  ++   GEE+ + +IA AIV +R 
Sbjct: 117 RGFSFRFDAPLDMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRA 176

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            +P  TT+ L+ ++ + V   +  +  PATR+FQA+RIF+N E+EE+   L      LK 
Sbjct: 177 ESPIDTTRKLAQIVAQNVRTRERGQ-DPATRTFQAIRIFINRELEEVGAVLPQVMCRLKE 235

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDV 300
           GG L V++FHSLEDR+VK+F    S      R      A  P +   I  + + P + ++
Sbjct: 236 GGRLAVIAFHSLEDRIVKQFVKKYSQHAPLPRWAAVREADLPELPLKIVGRALKPGEAEI 295

Query: 301 AFNRRSRSAKLRAGMRTVERSIE 323
           A N R+RSA LR   RT     E
Sbjct: 296 AANPRARSAVLRVAERTAGPIPE 318


>gi|84686327|ref|ZP_01014221.1| methyltransferase MraW/YabC [Maritimibacter alkaliphilus HTCC2654]
 gi|84665510|gb|EAQ11986.1| methyltransferase MraW/YabC [Rhodobacterales bacterium HTCC2654]
          Length = 330

 Score =  360 bits (924), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 139/326 (42%), Positives = 196/326 (60%), Gaps = 5/326 (1%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRD 67
           M  A       H+PVLL  ++  + P    V +D TFGAG Y+R   + G+  VI +DRD
Sbjct: 1   MMVAAAARPSPHIPVLLRPLLETVAPVS-GVWIDGTFGAGSYARGLVEAGAETVIGIDRD 59

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
           P A    +  + DY  +  L + TFS + +   D  VDGVV DLGVSSMQ+D  +RGFSF
Sbjct: 60  PLAHEMAEGWLADYDGRIRLERGTFSDMDEIAGDP-VDGVVLDLGVSSMQLDLAERGFSF 118

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
            + GPLDMRMS  G +A+D+VN+A  ++L  IL   GEE+ + RIA  IV+ R++  F+T
Sbjct: 119 MRDGPLDMRMSQEGPTAADLVNEAPEEELADILYHYGEERASRRIARQIVRAREAESFKT 178

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T  L+  ++K +   K  + HPATRSFQA+RI VN+E  +LA+GL +AE+ALK GG L V
Sbjct: 179 TAQLAETVEKCLPRPKPGQSHPATRSFQAIRIAVNDEFGQLAEGLEAAERALKPGGKLAV 238

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+FHSLEDR+VK+F    +          P +  H   F    ++ + P +E++A N R+
Sbjct: 239 VTFHSLEDRVVKRFLQLAASTGGGGSRYAPAAEDHTPRFDLTPRRAIAPDEEELAENPRA 298

Query: 307 RSAKLRAGMRTVERS-IEDDSFVHLP 331
           RS++LR   RT   +   D S + LP
Sbjct: 299 RSSRLRVATRTDAPAERTDRSKLGLP 324


>gi|218768820|ref|YP_002343332.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis Z2491]
 gi|20139195|sp|Q9JSY9|RSMH_NEIMA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|121052828|emb|CAM09176.1| conserved hypothetical protein [Neisseria meningitidis Z2491]
 gi|308388613|gb|ADO30933.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis alpha710]
 gi|325130837|gb|EGC53570.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis
           OX99.30304]
 gi|325136978|gb|EGC59575.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis M0579]
 gi|325208773|gb|ADZ04225.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis NZ-05/33]
          Length = 328

 Score =  360 bits (924), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 118/323 (36%), Positives = 174/323 (53%), Gaps = 13/323 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           MS A  +    H+ VLL + +  L      V +D TFG GG+SR           +I  D
Sbjct: 1   MSGAESY---RHITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFD 57

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGD 122
           +DP A++  +E +    ++  +    F+  Q  +   G   VDG +FDLG+SS QID G 
Sbjct: 58  KDPQAIAVAEE-LARSDKRVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGS 116

Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF+   PLDMRM  + G+SA++ +  A+ +DL  ++   GEE+ + +IA AIV +R 
Sbjct: 117 RGFSFRFDAPLDMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRA 176

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            +P  TT+ L+ ++ + V   +  +  PATR+FQA+RIF+N E+EE+   L      LK 
Sbjct: 177 ESPIDTTRKLAQIVAQNVRTRERGQ-DPATRTFQAIRIFINRELEEVGAVLPQVMCRLKE 235

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDV 300
           GG L V++FHSLEDR+VK+F    S      R      A  P     I  + + P + ++
Sbjct: 236 GGRLAVIAFHSLEDRIVKQFVKKYSQHAPLPRWAAVREADLPEPPLKIAGRALKPGEAEI 295

Query: 301 AFNRRSRSAKLRAGMRTVERSIE 323
           A N R+RSA LR   RT     E
Sbjct: 296 AANPRARSAVLRVAERTAGPIPE 318


>gi|120555371|ref|YP_959722.1| S-adenosyl-methyltransferase MraW [Marinobacter aquaeolei VT8]
 gi|263456394|sp|A1U3G6|RSMH_MARAV RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|120325220|gb|ABM19535.1| S-adenosyl-methyltransferase MraW [Marinobacter aquaeolei VT8]
          Length = 319

 Score =  359 bits (923), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 112/318 (35%), Positives = 176/318 (55%), Gaps = 12/318 (3%)

Query: 9   MSSAIHHTIGD---HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVI 62
           M++       +   H  VLL+  +  L        +DATFG GG+SR        G  ++
Sbjct: 1   MTARQDDQANEGYQHRSVLLDAAVDYLVTDENGRYVDATFGRGGHSRLILGKLGQGGQLL 60

Query: 63  ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQID 119
            +D+DP A++  +E +     +F  +  +F++L   +  +G   VDGV+ DLGVSS Q+D
Sbjct: 61  GIDKDPEAIAVARE-LASGDSRFQWYHGSFAELDLALERQGWSQVDGVLMDLGVSSPQLD 119

Query: 120 CGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178
              RGFSF + GPLDMRM+     SA+  + +A+ +++  ++   GEE+ + RIA  +V+
Sbjct: 120 DASRGFSFMRDGPLDMRMNPQQEPSAAQWLAEADEREIADVIWRYGEERFSRRIARLVVE 179

Query: 179 RRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           RRQ  P +TT+ L+ L+ + V   K    HPATR+FQA+RIF+N E+E+L  GL +A   
Sbjct: 180 RRQEQPIETTRQLAELVAEAVP-KKEKHKHPATRAFQAIRIFINRELEDLEAGLAAAVDR 238

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L  GG L+V+SFHSLEDRLVK+F    +      + +  +         +  K     ++
Sbjct: 239 LAPGGRLVVISFHSLEDRLVKRFMRDLARGPKLPKGIPVTAEQEESGFQLIGKASKANEQ 298

Query: 299 DVAFNRRSRSAKLRAGMR 316
           ++  N R+RSA +R   R
Sbjct: 299 EITENVRARSAVMRVLER 316


>gi|15676324|ref|NP_273460.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis MC58]
 gi|20139199|sp|Q9K0Z0|RSMH_NEIMB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|7225634|gb|AAF40850.1| conserved hypothetical protein [Neisseria meningitidis MC58]
 gi|325140926|gb|EGC63433.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis CU385]
          Length = 328

 Score =  359 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 119/323 (36%), Positives = 175/323 (54%), Gaps = 13/323 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           MS A  +    H+ VLL + +  L      V +D TFG GG+SR           +I  D
Sbjct: 1   MSGAESY---RHITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFD 57

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGD 122
           +DP A++  +E +    ++  +    F+  Q  +   G   VDG +FDLG+SS QID G 
Sbjct: 58  KDPQAIAVAEE-LARSDKRVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGS 116

Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF+   PLDMRM  + G+SA++ +  A+ +DL  ++   GEE+ + RIA AIV +R 
Sbjct: 117 RGFSFRFDAPLDMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRRIARAIVAQRA 176

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            +P  TT+ L+ ++ + V   +  +  PATR+FQA+RIF+N E+EE+   L      LK 
Sbjct: 177 ESPIDTTRKLAQIVAQNVRTRERGQ-DPATRTFQAVRIFINRELEEVGAVLPQVMCRLKE 235

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDV 300
           GG L V++FHSLEDR+VK+F    S      R      A  P +   I  + + P + ++
Sbjct: 236 GGRLAVIAFHSLEDRIVKQFVKKYSQHAPLPRWAAVREADLPELPLKIVGRALKPGEAEI 295

Query: 301 AFNRRSRSAKLRAGMRTVERSIE 323
           A N R+RSA LR   RT     E
Sbjct: 296 AANPRARSAVLRVAERTAGPIPE 318


>gi|71898210|ref|ZP_00680384.1| methyltransferase [Xylella fastidiosa Ann-1]
 gi|71731949|gb|EAO34006.1| methyltransferase [Xylella fastidiosa Ann-1]
          Length = 340

 Score =  359 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 116/310 (37%), Positives = 171/310 (55%), Gaps = 10/310 (3%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAV 71
           H    HVPVL  + +  L        LD TFG GG++R   +    G  ++ +D+DP A+
Sbjct: 25  HLSMTHVPVLYTQAMEGLRVVENGTYLDGTFGRGGHARGVLQQLGPGGRLLVMDKDPEAI 84

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +   E       +  +   +F+ L      + +DGV+FDLGVSS Q+D  +RGFSF K G
Sbjct: 85  AMA-ERAFSCDPRVVIRHGSFALLAQLAAPQSLDGVLFDLGVSSPQLDVPERGFSFAKDG 143

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM    G SA+  + + + +++  +L   GEEKQ+ RIA AIV  R + P   T  
Sbjct: 144 PLDMRMDPEMGESAAQWLARVSEREIADVLWTYGEEKQSRRIARAIVAYRANQPLLRTVQ 203

Query: 191 LSSLIQKTVYFSK----NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           L+ LI   +  +K     +RIHPATRSFQ +RI VN E+ +L  GL +A  AL+ GG L+
Sbjct: 204 LAELIASVMLRTKSGGCKSRIHPATRSFQGIRIHVNRELVDLEVGLEAALAALRPGGRLV 263

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+SFHSLEDR+VK+F +  S      R +        + + I +  +   ++++  N R+
Sbjct: 264 VISFHSLEDRIVKQFISRHSKVPPTNRRLPEVQTFVPLLRMIGR-AIKADEDELEVNPRA 322

Query: 307 RSAKLRAGMR 316
           RSA LR   +
Sbjct: 323 RSAVLRVAEK 332


>gi|153809202|ref|ZP_01961870.1| hypothetical protein BACCAC_03513 [Bacteroides caccae ATCC 43185]
 gi|149128178|gb|EDM19398.1| hypothetical protein BACCAC_03513 [Bacteroides caccae ATCC 43185]
          Length = 304

 Score =  359 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 105/304 (34%), Positives = 161/304 (52%), Gaps = 16/304 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HVPVLL++ +  +N  P    +D TFG  G+SR        G  ++  D+D  A     E
Sbjct: 9   HVPVLLKESVDGMNIRPDGTYVDVTFGGAGHSREILSRLGEGGRLLGFDQDEDA-----E 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                   F+  ++ F  L +++       VD ++ DLGVSS   D  +RGFSF+  G L
Sbjct: 64  RNIVNDPHFTFVRSNFRYLHNFLRYHNIEQVDAILADLGVSSHHFDDSERGFSFRFDGDL 123

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  +G++A+D++N    + L  I  + GE K + ++A  IVK R     +T  +  
Sbjct: 124 DMRMNKRAGLTAADILNTYEEERLADIFYLYGELKNSRKLASVIVKARNGQQIRTIGEFL 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I+    F +        + FQALRI VN E+E L + L +A +ALK GG L+V+++HS
Sbjct: 184 EIIKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLLAATEALKPGGRLVVITYHS 241

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK    + + +  A      +   P  F+ +  KV+VP Q ++  N RSRSAKLR
Sbjct: 242 LEDRMVKNIMKTGNVEGKAESDFFGNLQTP--FRLVNNKVIVPDQAEIERNPRSRSAKLR 299

Query: 313 AGMR 316
              +
Sbjct: 300 IAEK 303


>gi|170718775|ref|YP_001783958.1| S-adenosyl-methyltransferase MraW [Haemophilus somnus 2336]
 gi|263456057|sp|B0US59|RSMH_HAES2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|168826904|gb|ACA32275.1| S-adenosyl-methyltransferase MraW [Haemophilus somnus 2336]
          Length = 321

 Score =  359 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 125/326 (38%), Positives = 178/326 (54%), Gaps = 22/326 (6%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALD 65
           MS     +  +H  VLL + +  L      + +D TFG GG+SR      S    +IA+D
Sbjct: 1   MSMQDTFSSPEHFTVLLREAVGGLALKENGIYIDGTFGRGGHSRFILSQLSKKGQLIAID 60

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCG 121
           RDP A+   Q        +F +   +FS + D     G    +DG++ DLGVSS Q+D  
Sbjct: 61  RDPQAIQVAQNI---QDPRFRIVHDSFSAIPDICEKLGLTGKIDGILLDLGVSSPQLDNA 117

Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF K GPLDMRM  + G+SA++ + Q + +DL  +L   GEE+ A RIA AIV   
Sbjct: 118 ERGFSFMKDGPLDMRMDTTQGLSATEWLRQVSEQDLAWVLKTFGEERFAKRIAQAIVGYN 177

Query: 181 QS------APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234
           +S       P   T  L+ LI ++V F K+   HPATRSFQA+RIF+N+E++EL + L  
Sbjct: 178 KSAVQSGAEPLNRTLQLAELIAQSVPF-KDKYKHPATRSFQAIRIFINSELDELEKVLNG 236

Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA---HPAVFQSITKK 291
           A   L   G L ++SFHSLEDR+VK F   +S      + +        H    + +  K
Sbjct: 237 ALNVLAPQGRLSIISFHSLEDRMVKHFIRKQSKGDDLPKGLPLREEQIQHNQKLKPV-GK 295

Query: 292 VVVPTQEDVAFNRRSRSAKLRAGMRT 317
            ++PT++++A N RSRSA LR   R 
Sbjct: 296 AIMPTEQEMAANVRSRSAVLRIAERI 321


>gi|323142009|ref|ZP_08076860.1| S-adenosyl-methyltransferase MraW [Phascolarctobacterium sp. YIT
           12067]
 gi|322413541|gb|EFY04409.1| S-adenosyl-methyltransferase MraW [Phascolarctobacterium sp. YIT
           12067]
          Length = 310

 Score =  359 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 104/309 (33%), Positives = 167/309 (54%), Gaps = 12/309 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQ 75
            H  +LL + +  L      + +D T G  G+S +F    + G  +I +D+D  A++ G 
Sbjct: 4   KHTSILLAESVDFLITDKNGIYVDCTMGGAGHSSAFAAQLEAGGLLIGIDQDDDAIAAGS 63

Query: 76  ETM-RDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSG 131
           E +   +  + ++ ++ F      +   G+D   G+ FDLGVSS Q+D  +RGFS+   G
Sbjct: 64  ERLLNKFTCKTAVAKSNFEIFSQVLDSMGIDEIDGIFFDLGVSSYQLDTPERGFSYMHDG 123

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+    + A  +VN    ++L  I+   GEE+ A RIA  IV  R+  P  TT +
Sbjct: 124 PLDMRMNKEASLDAEYIVNHYKEEELADIIHRYGEERWAKRIAQFIVAARKEKPLTTTFE 183

Query: 191 LSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I+K +   ++ +  HPA R+FQA+RI VNNE+  LA  +  A   LK+GG + V++
Sbjct: 184 LVDVIKKAIPKGARLDGPHPAKRTFQAIRIEVNNELGILADTMERAVNRLKSGGRIGVIT 243

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR++K+ FA  +          +       + +      +VP++ +V  N RSRS
Sbjct: 244 FHSLEDRIIKQTFAKLAKGCTCPPQLPVCVCGKKPLLRKTGN--IVPSKAEVEENPRSRS 301

Query: 309 AKLRAGMRT 317
           A+LR  ++ 
Sbjct: 302 ARLRYAIKI 310


>gi|238019059|ref|ZP_04599485.1| hypothetical protein VEIDISOL_00921 [Veillonella dispar ATCC 17748]
 gi|237864314|gb|EEP65604.1| hypothetical protein VEIDISOL_00921 [Veillonella dispar ATCC 17748]
          Length = 310

 Score =  359 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 104/307 (33%), Positives = 163/307 (53%), Gaps = 10/307 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS---FCKMGSNVIALDRDPFAVSCGQ 75
           +H  VLL + +  +   P  + +D T G  G++ +          +I LD+D  A+S  +
Sbjct: 4   NHTSVLLRETVDSVVTNPKGIYVDCTLGGAGHAHAVGEMLDPEGMIIGLDQDEDALSVAR 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + + D   Q       FS L++ + ++G   VDG +FDLGVSS Q+D  +RGFS+   GP
Sbjct: 64  QRLSDLTCQVLTIPTNFSNLKEALHNEGIYEVDGFIFDLGVSSYQLDTPERGFSYMNDGP 123

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM     ++A +VVN+ +   L +I+   GEE+ A RI   I+  RQ     TT +L
Sbjct: 124 LDMRMDKDAPLTAEEVVNEYDADALLQIIRDYGEERWAKRIVEFIINARQEKRITTTGEL 183

Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I++ +    + +  HPA R+FQA+RI VN E+  L      A   LK  G + V++F
Sbjct: 184 VRIIKQAIPAKARQDGPHPAKRTFQAIRIEVNRELAILHDSFVDAVSMLKPKGKIGVITF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+ K+ F   S   +      +    H AV ++   K + P+  ++  N R+RSA
Sbjct: 244 HSLEDRITKQTFKELSTACICPPELPMCVCNHKAVVKAKN-KAIEPSAGEIEVNPRARSA 302

Query: 310 KLRAGMR 316
           KLR  ++
Sbjct: 303 KLRVAVK 309


>gi|270157407|ref|ZP_06186064.1| S-adenosyl-methyltransferase MraW [Legionella longbeachae D-4968]
 gi|289164199|ref|YP_003454337.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Legionella longbeachae NSW150]
 gi|269989432|gb|EEZ95686.1| S-adenosyl-methyltransferase MraW [Legionella longbeachae D-4968]
 gi|288857372|emb|CBJ11200.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Legionella longbeachae NSW150]
          Length = 308

 Score =  359 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 113/311 (36%), Positives = 174/311 (55%), Gaps = 12/311 (3%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSC 73
           +  H  VLL + I  L      +  D TFG GG+S+   +       + A+D+D  A+  
Sbjct: 1   MATHQSVLLHESITGLAIKSDGIYFDGTFGRGGHSKEILRFLNEEGRLYAIDKDLDAIMY 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGV----DGVVFDLGVSSMQIDCGDRGFSFQK 129
            +E   D  ++F +FQ ++++++ +  + GV    DG++ DLGVSS Q+D  +RGFSF +
Sbjct: 61  AKEHF-DQDKRFHIFQGSYAKIEQFATEAGVLGMVDGILLDLGVSSPQLDNPERGFSFMQ 119

Query: 130 SGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM  S   SA+  VN+A   ++T +  + GEE+ A RIA AIV  R  AP  TT
Sbjct: 120 QGPLDMRMDRSQPMSAARFVNEAETDEMTSVFKLYGEERFAGRIAKAIVTARNIAPITTT 179

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ ++++     + ++ HPATR FQA+RI+VN E+ +L + L      L   G L+V+
Sbjct: 180 LQLAEIVKEANPKWEKHK-HPATRVFQAIRIYVNQELNDLERCLEQCIHVLAPKGRLVVI 238

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           SFHSLEDR+VK+F  ++           I        F+ I  K ++P Q +++ N R+R
Sbjct: 239 SFHSLEDRIVKQFMKNKEEGAKPPPEVPIRYKELKTNFKRI-GKAIMPQQNEISENVRAR 297

Query: 308 SAKLRAGMRTV 318
           SA LR G +  
Sbjct: 298 SAVLRIGEKLA 308


>gi|77361427|ref|YP_341002.1| S-adenosyl-methyltransferase MraW [Pseudoalteromonas haloplanktis
           TAC125]
 gi|88909212|sp|Q3IFZ6|RSMH_PSEHT RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|76876338|emb|CAI87560.1| S-adenosyl-dependent methyltransferase [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 312

 Score =  359 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 120/308 (38%), Positives = 177/308 (57%), Gaps = 13/308 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
           +HV VL+++ I  L   P  + +D TFG GG+S            + A+D+DP A+    
Sbjct: 6   EHVSVLMDETIDALAIKPDGIYMDGTFGRGGHSGQILARLGSEGRLQAIDQDPQAIKSA- 64

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           E   D   +F++    FS L            VDG++ D+GVSS Q+D   RGFSF K G
Sbjct: 65  EKFAD-DPRFAIAHTRFSNLYGVAEQNDLIGKVDGILLDIGVSSPQLDDALRGFSFMKDG 123

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + G SA+  + +A + D+T ++  LGEEK   RIAH +++ R+  P  TT+ 
Sbjct: 124 PLDMRMDPTTGRSAAQWLAEAELDDITHVIKKLGEEKFGKRIAHKVLEVREHTPITTTKQ 183

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ L+ + V   K+   HPATR+FQA+RI++N+E+EE+   L+SA K LK GG L+V+SF
Sbjct: 184 LADLVDEAVPV-KDKFKHPATRTFQAIRIYINSELEEIQTALQSAIKVLKPGGRLVVISF 242

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI--TKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+VK+F   +S      R +  ++A      ++    K + P+  +V  N RSRS
Sbjct: 243 HSLEDRIVKQFIRKQSRGETLPRGLPLTDAQINQNLTLKAVGKAIKPSAAEVERNPRSRS 302

Query: 309 AKLRAGMR 316
           + LR   R
Sbjct: 303 SVLRIAQR 310


>gi|323491037|ref|ZP_08096229.1| 16S rRNA m(4)C1402 methyltranserfase [Vibrio brasiliensis LMG
           20546]
 gi|323314701|gb|EGA67773.1| 16S rRNA m(4)C1402 methyltranserfase [Vibrio brasiliensis LMG
           20546]
          Length = 316

 Score =  359 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 118/323 (36%), Positives = 170/323 (52%), Gaps = 23/323 (7%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M+ A       H+ VLL + I  L   P  + +D TFG GG+SR+          + ++D
Sbjct: 1   MTEAF-----KHISVLLHESIDGLAIKPDGIYIDGTFGRGGHSRTILSKLDENGRLYSID 55

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCG 121
           RDP A++  Q+       +F++    FS + +Y  D      VDGV+ DLGVSS Q+D  
Sbjct: 56  RDPQAIAEAQKI---DDPRFTIIHGPFSGMAEYAADYDLVGKVDGVLLDLGVSSPQLDDA 112

Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF K GPLDMRM   SGI  S  + +A++ D+T ++   GE+K   RIA AIV  R
Sbjct: 113 ERGFSFMKDGPLDMRMDPTSGIPVSQWLMEADLDDITWVIREFGEDKHVRRIAKAIVAYR 172

Query: 181 QSA---PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
           ++    P   T  L+ LI      S   + HPATR+FQA RI++N+E+EE+   L+ A  
Sbjct: 173 ENEENEPLTRTSQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAAS 232

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVV 293
            L   G L V+SFHSLEDR+VK+F    S        +  +                K +
Sbjct: 233 ILAPQGRLSVISFHSLEDRMVKRFIRKESKGPEVPHGIPMTEEQIKALGSADLKPVGKAI 292

Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316
            P++++V  N RSRS+ LR   +
Sbjct: 293 KPSKQEVEHNARSRSSVLRIAEK 315


>gi|114704930|ref|ZP_01437838.1| S-adenosyl-methyltransferase [Fulvimarina pelagi HTCC2506]
 gi|114539715|gb|EAU42835.1| S-adenosyl-methyltransferase [Fulvimarina pelagi HTCC2506]
          Length = 339

 Score =  359 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 153/324 (47%), Positives = 200/324 (61%), Gaps = 4/324 (1%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETM 78
            HVPVLL +VI  L P  G+ I+D TFGAGGY+R+    G+ VIA+DRDP A+   +   
Sbjct: 17  PHVPVLLAEVIEALAPNAGETIVDGTFGAGGYTRAILGAGAEVIAIDRDPTAIETARALA 76

Query: 79  RDYKEQFSLFQATFSQLQDYVPDK--GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
            +   + +     F  +   + D+   +DG+V D+GVSSMQID  +RGFSFQK GPLDMR
Sbjct: 77  GESNGRLTPVAGRFGAMGSLLSDRQGAIDGIVLDVGVSSMQIDKAERGFSFQKDGPLDMR 136

Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
           M   G +A+DVVN  +V DL RI   LG+E+ A R A AIV RR++ PF  T DL+ ++ 
Sbjct: 137 MGNHGATAADVVNTLSVGDLARIFNFLGDERHAGRAARAIVARREAKPFVRTLDLAGVVG 196

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
           K V   K+ +I PATR FQALRIFVN+E+ ELA+ L +AE  LK GG L+VVSFHSLEDR
Sbjct: 197 KAVGRGKHEKIDPATRCFQALRIFVNDELGELARALVAAEGLLKPGGRLVVVSFHSLEDR 256

Query: 257 LVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           +VK+FF  R+G     RH+         F +   K V  ++ + A N R+RSAKLR G R
Sbjct: 257 IVKRFFLDRAGTQGGSRHLPDVMPEVPTFSARN-KAVAASEREAADNPRARSAKLRFGTR 315

Query: 317 T-VERSIEDDSFVHLPRLPTLSQF 339
                   D +F  LP L  LS+ 
Sbjct: 316 LEAAPRSGDLAFASLPDLADLSRI 339


>gi|254292761|ref|YP_003058784.1| S-adenosyl-methyltransferase MraW [Hirschia baltica ATCC 49814]
 gi|254041292|gb|ACT58087.1| S-adenosyl-methyltransferase MraW [Hirschia baltica ATCC 49814]
          Length = 336

 Score =  359 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 139/329 (42%), Positives = 190/329 (57%), Gaps = 8/329 (2%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQE 76
           G H+PVLLE V+  L P  G+V +D T+G GGYSR+        V+A+DRDP A+    +
Sbjct: 5   GTHIPVLLEPVVEALAPTDGRVYIDGTYGGGGYSRAVMAVADCTVLAVDRDPDAMQRAWD 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +       F +L       G   VDGV+ DLGVSS QID  +RGFSF + GPL
Sbjct: 65  H-AGKDPRLKPAPGRFGELDLAARAAGHEYVDGVMLDLGVSSYQIDQAERGFSFMRDGPL 123

Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           DMRM   G SA+D VN  + KDL  I    GEE  + RIA  IVKRR    F  T DL++
Sbjct: 124 DMRMEQHGPSAADAVNLLSEKDLASIFHFYGEEPASRRIAKFIVKRRDEEKFTRTLDLAN 183

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           LI+ +V   +  + HPATR FQALR++VN+E+ EL + L ++E+ + +GG L+VV+FHSL
Sbjct: 184 LIESSVGGRRGKKTHPATRVFQALRLYVNDELGELVRALVASEEIITSGGRLVVVTFHSL 243

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           EDR+VK F   R G +       P         F+ + +K + PT E+VA N RSRS+KL
Sbjct: 244 EDRIVKTFLRERGGAMGGGSRHAPEAPAGKSPTFELVARKAIDPTDEEVAGNPRSRSSKL 303

Query: 312 RAGMRTVERSIEDDSFVHLPRLPTLSQFR 340
           R  +RT   +  + S ++  R+P+L    
Sbjct: 304 RWAIRTDAPTWGEKSGLN-SRIPSLDVLE 331


>gi|325128828|gb|EGC51687.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis N1568]
          Length = 328

 Score =  359 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 117/323 (36%), Positives = 174/323 (53%), Gaps = 13/323 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           MS A  +    H+ VLL + +  L      V +D TFG GG+SR           +I  D
Sbjct: 1   MSGAESY---RHITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFD 57

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGD 122
           +DP A++  +E +    ++  +    F+  Q  +   G   VDG +FDLG+SS QID G 
Sbjct: 58  KDPQAIAVAEE-LARSDKRVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGS 116

Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF+   PLDMRM  + G+SA++ +   + +DL  ++   GEE+ + +IA AIV +R 
Sbjct: 117 RGFSFRFDAPLDMRMDTTRGMSAAEWIAVVSEQDLHEVIKNYGEERFSRQIARAIVAQRA 176

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            +P  TT+ L+ ++ + V   +  +  PATR+FQA+RIF+N E+EE+   L      LK 
Sbjct: 177 ESPIDTTRKLAQIVAQNVRTRERGQ-DPATRTFQAVRIFINRELEEVGAVLPQVMCRLKE 235

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDV 300
           GG L V++FHSLEDR+VK+F    S      R      A  P +   I  + + P + ++
Sbjct: 236 GGRLAVIAFHSLEDRIVKQFVKKYSQHAPLPRWAAVREADLPELPLKIVGRALKPGEAEI 295

Query: 301 AFNRRSRSAKLRAGMRTVERSIE 323
           A N R+RSA LR   RT     E
Sbjct: 296 AANPRARSAVLRVAERTAGPIPE 318


>gi|56459539|ref|YP_154820.1| S-adenosyl-methyltransferase MraW [Idiomarina loihiensis L2TR]
 gi|68565448|sp|Q5R0L7|RSMH_IDILO RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|56178549|gb|AAV81271.1| Predicted S-adenosylmethionine-dependent methyltransferase
           [Idiomarina loihiensis L2TR]
          Length = 315

 Score =  359 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 125/317 (39%), Positives = 181/317 (57%), Gaps = 13/317 (4%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPF 69
           +  T   HV VLLE+ I  L   P    +DATFG GG++R+          VIALD+DP 
Sbjct: 1   MITTSPQHVSVLLEESIEALATDPQGTYIDATFGRGGHTRALLNQLGDDARVIALDQDPE 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGF 125
           A++       D   +F +    FS LQ  + D    + V G++FDLGVSS Q+D  +RGF
Sbjct: 61  AIAAAAAFADD--PRFQIIHTPFSNLQQVLDDLQLNRQVTGILFDLGVSSPQLDDAERGF 118

Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF + GPLDMRM+  SG +A++ +N+A   D++ +L   GEE+ A RIA AIV  R+  P
Sbjct: 119 SFMRDGPLDMRMNTTSGETAAEWLNRAEKDDISWVLKEYGEERFARRIASAIVMDREKKP 178

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           F  T+ L+ +I +     + ++ HPATR+FQA+RI +N E+E++ Q L ++   LK  G 
Sbjct: 179 FTRTKQLAEMIARVSPVKEKHK-HPATRTFQAIRIHINRELEQIEQALEASLSGLKEDGR 237

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK--KVVVPTQEDVAF 302
           L+V+SFHSLEDRLVK+F    S        +  + A     +++ K  K + P + +V  
Sbjct: 238 LVVISFHSLEDRLVKRFIRKHSEGKQLPPGLPVTEAERNKDKALEKVGKAIKPGKAEVQL 297

Query: 303 NRRSRSAKLRAGMRTVE 319
           N RSRS+ LR   R   
Sbjct: 298 NPRSRSSVLRIARRVRN 314


>gi|325578829|ref|ZP_08148876.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Haemophilus parainfluenzae ATCC 33392]
 gi|325159653|gb|EGC71785.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Haemophilus parainfluenzae ATCC 33392]
          Length = 322

 Score =  359 bits (922), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 122/325 (37%), Positives = 176/325 (54%), Gaps = 20/325 (6%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M++    +  +H+ VLL + +  L      + +D TFG GG+SR           +IA+D
Sbjct: 1   MTTQNSFSAPEHITVLLHEAVNGLALKENGIYIDGTFGRGGHSRLILSQLSENGRLIAVD 60

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCG 121
           RDP A++  ++       +F +   +FS + D          +DG++ DLGVSS Q+D  
Sbjct: 61  RDPRAIAEAEKI---QDPRFHIEHNSFSHIPDICQKLDLVGKIDGILLDLGVSSPQLDEA 117

Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           DRGFSF K GPLDMRM  + G+SA++ + Q +V DLT +L   GEE+ A RIA AIV+  
Sbjct: 118 DRGFSFMKDGPLDMRMDTTQGLSAAEWLKQVSVDDLTWVLKTFGEERFAKRIATAIVEFN 177

Query: 181 Q------SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234
           +      +     T  L+ LI + V F K+   HPATRSFQA+RI++N E++EL   L S
Sbjct: 178 KRAIKNGTECLSRTSQLAELIAQAVPF-KDKHKHPATRSFQAIRIYINAELDELESVLNS 236

Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ--SITKKV 292
           A   L   G L ++SFHSLEDR+VK F   +S      R +          Q   I  K 
Sbjct: 237 ALDMLAPEGRLSIISFHSLEDRMVKHFMRKQSKGDDIPRGLPLREDQIQRNQKLKIIGKA 296

Query: 293 VVPTQEDVAFNRRSRSAKLRAGMRT 317
           + P++ +++ N RSRSA LR   R 
Sbjct: 297 IQPSEAEISANPRSRSAVLRIAERV 321


>gi|319900359|ref|YP_004160087.1| S-adenosyl-methyltransferase MraW [Bacteroides helcogenes P 36-108]
 gi|319415390|gb|ADV42501.1| S-adenosyl-methyltransferase MraW [Bacteroides helcogenes P 36-108]
          Length = 306

 Score =  359 bits (922), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 107/308 (34%), Positives = 163/308 (52%), Gaps = 16/308 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPFAVSCGQE 76
           H+PVLL   +  +N  P    +D TFG GG+SR      K G  ++  D+D  A     E
Sbjct: 8   HIPVLLMPSVDGMNIRPDGTYVDVTFGGGGHSREILTRLKDGGRLLGFDQDEDA-----E 62

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                   F+  ++ F  L +++   G   VD ++ DLGVSS   D   RGFSF+  G L
Sbjct: 63  RNIVNDPHFTFVRSNFRYLHNFLRYHGIGQVDAILADLGVSSHHFDDSQRGFSFRFDGEL 122

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  +G +A+DVVN  + + L  I  + GE K + ++A  I K R +    T  +  
Sbjct: 123 DMRMNKRAGTTAADVVNNCSEEHLADIFYLYGELKNSRKLASVIAKARAAQKITTIGEFL 182

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I+    F +        + FQALRI VN+E+E L + L +A +ALK GG L+V+++HS
Sbjct: 183 DIIKPL--FGREREKKELAKVFQALRIEVNHEMEALKEMLYAATEALKPGGRLVVITYHS 240

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK    + + +  A +    +   P  F+ +  KV+VP + ++  N RSRSAKLR
Sbjct: 241 LEDRMVKNIMKTGNVEGKAEKDFFGNVQTP--FRLVNNKVIVPDEAEIERNPRSRSAKLR 298

Query: 313 AGMRTVER 320
              +   +
Sbjct: 299 IAEKVERK 306


>gi|300726283|ref|ZP_07059736.1| S-adenosyl-methyltransferase MraW [Prevotella bryantii B14]
 gi|299776480|gb|EFI73037.1| S-adenosyl-methyltransferase MraW [Prevotella bryantii B14]
          Length = 318

 Score =  359 bits (922), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 111/313 (35%), Positives = 171/313 (54%), Gaps = 20/313 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA-----V 71
           HVPVLLE+ +  LN  PG + +D TFG GG+S          +++ + D+D  A      
Sbjct: 9   HVPVLLEQTVNGLNIQPGGIYIDVTFGGGGHSSKILSCLDSQAHLYSFDQDADAENNIYY 68

Query: 72  SCGQETMRDY----KEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRG 124
           +      +D+      +F+  ++ F  +++++    VD   G++ DLGVSS   D  DRG
Sbjct: 69  AEAGSNEKDHRFIDDPRFTFVRSNFRYIKNWMRYYHVDYIDGLLADLGVSSHHFDDKDRG 128

Query: 125 FSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           FSF+   PLDMRM+  + ++A+D+VN      L  I  + GE K + +IA+A+V+ RQ+ 
Sbjct: 129 FSFRFDSPLDMRMNKRADMTAADIVNNYPESQLADIFYLYGELKNSRKIANALVRYRQNQ 188

Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
              TTQD     +    F +        R FQALRI VN+E++ L + L SA + L+ GG
Sbjct: 189 KILTTQDFIKATEPL--FKREKEKKDMARLFQALRIEVNHEMDALKEMLNSATELLRPGG 246

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            L V+++HSLEDR+VK    S + +   V+     +  P  ++ I  KV++P QE+   N
Sbjct: 247 RLSVITYHSLEDRIVKNVMKSGNPEGKIVKDFFGKSETP--YKLINNKVIIPDQEEQENN 304

Query: 304 RRSRSAKLRAGMR 316
            RSRSAKLR   +
Sbjct: 305 PRSRSAKLRIAEK 317


>gi|113971906|ref|YP_735699.1| S-adenosyl-methyltransferase MraW [Shewanella sp. MR-4]
 gi|122943466|sp|Q0HE75|RSMH_SHESM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|113886590|gb|ABI40642.1| S-adenosyl-methyltransferase MraW [Shewanella sp. MR-4]
          Length = 313

 Score =  359 bits (922), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 116/307 (37%), Positives = 172/307 (56%), Gaps = 13/307 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H+ VLLE+ +  LN     + +D TFG GG+SR   +       +IA+DRDP A+   ++
Sbjct: 7   HLSVLLEETVGGLNIKDDGIYIDGTFGRGGHSRQVLQRLGENGRLIAIDRDPQAIEAAKQ 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              D   +F +    F QL DYV + G    +DGV+ DLGVSS Q+D  +RGFSF + GP
Sbjct: 67  FADD--PRFQIVHGGFGQLADYVEELGLVGKIDGVLLDLGVSSPQLDDAERGFSFLRDGP 124

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G +A+  + +A ++D+  +    GEEK A  IA  I   R   PF  T+DL
Sbjct: 125 LDMRMDNSQGETAAQWLARAEIEDMAWVFKTYGEEKNARHIARCIAADRDKTPFLRTKDL 184

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI +     + N+ HPATR FQA+RI++N+E++++ Q L  A   L   G L ++SFH
Sbjct: 185 ADLIARITKNKERNK-HPATRVFQAIRIYINSELDQIDQALEGALTVLAPQGRLSIISFH 243

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI--TKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK+F    S        +  +       + +    K ++P+ E++  N R+RS+
Sbjct: 244 SLEDRIVKRFIRRHSQGESVPHGLPITEDQINKSRKLRAIGKAIMPSDEEIERNARARSS 303

Query: 310 KLRAGMR 316
            LR   R
Sbjct: 304 VLRIAER 310


>gi|238760089|ref|ZP_04621239.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia
           aldovae ATCC 35236]
 gi|238701708|gb|EEP94275.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia
           aldovae ATCC 35236]
          Length = 320

 Score =  359 bits (922), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 120/312 (38%), Positives = 175/312 (56%), Gaps = 19/312 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H  VLL++ +  LN     + +D TFG GG+SR           +IA+DRDP A+   +
Sbjct: 13  KHTSVLLDEAVNGLNIRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDRDPQAIDAAK 72

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +FS+    FS L  YV +      +DGV+ DLGVSS Q+D  +RGFSF + G
Sbjct: 73  SI---TDSRFSIVHGPFSDLAHYVRELDLVGRIDGVLLDLGVSSPQLDDPERGFSFMRDG 129

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + G+SA+D + +A+  D+  +L   GEE+ A R+A AIV+R  + P   T++
Sbjct: 130 PLDMRMDPTRGLSAADWLMKASADDIAWVLKTFGEERFAKRLAKAIVERNLTQPMTRTKE 189

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ LI     F + ++ HPATRSFQA+RI++N+E+EE+ + L  A + L   G L V+SF
Sbjct: 190 LADLIANASPFREKHK-HPATRSFQAIRIYINSELEEIERALDGALEVLAPEGRLSVISF 248

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNRR 305
           HSLEDR+VK F    S        +  + A          +S+ K  ++P   +VA N R
Sbjct: 249 HSLEDRIVKNFIRHHSRGPQVPAGLPLTEAQLRSMGGRTLKSVGK--MMPPDAEVAENPR 306

Query: 306 SRSAKLRAGMRT 317
           +RS+ LR   R 
Sbjct: 307 ARSSVLRFAERI 318


>gi|225023749|ref|ZP_03712941.1| hypothetical protein EIKCOROL_00613 [Eikenella corrodens ATCC
           23834]
 gi|224943631|gb|EEG24840.1| hypothetical protein EIKCOROL_00613 [Eikenella corrodens ATCC
           23834]
          Length = 318

 Score =  359 bits (922), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 115/308 (37%), Positives = 170/308 (55%), Gaps = 12/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           HV VLL + +  L   PG V +D TFG GG+SR           ++  D+DP A++  ++
Sbjct: 8   HVTVLLHEAVDALEVKPGGVYVDGTFGRGGHSRLILSKLGANGRLVVFDKDPQAIAVARQ 67

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + +  ++  +    FS  Q  +   G   VDG +FDLGVSS QID  +RGFSF+   PL
Sbjct: 68  -LAEVDKRVQVVHGGFSGFQVALKGLGIEAVDGALFDLGVSSPQIDDAERGFSFRYDAPL 126

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  + G +A+  + +A  +++  ++   GEE+  S+IA AIV++RQ  P  TT  L+
Sbjct: 127 DMRMDTTRGQTAAQWLAEAGEEEIREVIRDYGEERFNSQIARAIVQQRQERPILTTGQLA 186

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            L  + V   +  +  PATR+FQA+RIF+N E+EE++  L  A   LK GG L V++FHS
Sbjct: 187 QLAAQAVRTRERGQ-DPATRTFQAIRIFINRELEEISAVLPQAAGYLKTGGRLAVIAFHS 245

Query: 253 LEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           LEDR+VK+F    S      + ++   S       + I  K    +  + A N R+RSA 
Sbjct: 246 LEDRIVKQFIRRHSRPTPLPKWVMVRESERPEPPLREI-GKAQRASAAETAANPRARSAV 304

Query: 311 LRAGMRTV 318
           LR   RT 
Sbjct: 305 LRVAERTA 312


>gi|166710645|ref|ZP_02241852.1| S-adenosyl-methyltransferase MraW [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 347

 Score =  359 bits (922), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 118/309 (38%), Positives = 174/309 (56%), Gaps = 7/309 (2%)

Query: 12  AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDP 68
            +      HVPVL  +V+  L        LD TFG GG++R   +    G  ++ +D+DP
Sbjct: 10  PVSQPPAAHVPVLYTQVLDGLQVTENGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDP 69

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
            A++  ++T      + S+ + +F+ L   V    VDG++ DLGVSS Q+D   RGFSF 
Sbjct: 70  EAIAVAEQTFGG-DARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLDVAGRGFSFG 128

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           K GPLDMRM   SG SA+  + QA  +++  +L   GEE+Q+ RIA AIV RR   P   
Sbjct: 129 KDGPLDMRMDPDSGQSAAQWLAQATDREIADVLWTYGEERQSRRIARAIVARRAEQPLLR 188

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T  L+ LI   +    +++ HPATRSFQA+RI++N E+++L  GL +A  ALK GG L V
Sbjct: 189 TAQLADLIASVMPRG-DSKTHPATRSFQAIRIYINRELDDLETGLDAALAALKPGGRLAV 247

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +SFHSLEDR+VK+F A  +    + R +  +       Q ++   +     ++  N R+R
Sbjct: 248 ISFHSLEDRIVKQFMARYAKAPPSNRRLPEAQPFVPTLQLVS-GAIKADDAELNVNPRAR 306

Query: 308 SAKLRAGMR 316
           SA LR   +
Sbjct: 307 SAVLRVAEK 315


>gi|121635455|ref|YP_975700.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis FAM18]
 gi|262825519|sp|A1KVM4|RSMH_NEIMF RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|120867161|emb|CAM10928.1| conserved hypothetical protein [Neisseria meningitidis FAM18]
 gi|325132957|gb|EGC55634.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis M6190]
 gi|325138945|gb|EGC61495.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis ES14902]
 gi|325144950|gb|EGC67233.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis
           M01-240013]
          Length = 328

 Score =  359 bits (922), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 118/323 (36%), Positives = 175/323 (54%), Gaps = 13/323 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           MS A  +    H+ VLL + +  L      V +D TFG GG+SR           +I  D
Sbjct: 1   MSGAESY---RHITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFD 57

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGD 122
           +DP A++  +E +    ++  +    F+  Q  +   G   VDG +FDLG+SS QID G 
Sbjct: 58  KDPQAIAVAEE-LARSDKRVGVVHGGFASFQAALDGLGIGKVDGALFDLGISSPQIDDGS 116

Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF+   PLDMRM  + G+SA++ +  A+ +DL  ++   GEE+ + +IA AIV +R 
Sbjct: 117 RGFSFRFDAPLDMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRA 176

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            +P  TT+ L+ ++ + V   +  +  PATR+FQA+RIF+N E+EE+   L      LK 
Sbjct: 177 ESPIDTTRKLAQIVAQNVRTRERGQ-DPATRTFQAVRIFINRELEEVGAVLPQVMCRLKE 235

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDV 300
           GG L V++FHSLEDR+VK+F    S      R      A  P +   I  + + P + ++
Sbjct: 236 GGRLAVIAFHSLEDRIVKQFVKKYSQHAPLPRWAAVREADLPELPLKIVGRALKPGEAEI 295

Query: 301 AFNRRSRSAKLRAGMRTVERSIE 323
           A N R+RSA LR   RT     E
Sbjct: 296 AANPRARSAVLRVAERTAGPIPE 318


>gi|212692815|ref|ZP_03300943.1| hypothetical protein BACDOR_02314 [Bacteroides dorei DSM 17855]
 gi|212664604|gb|EEB25176.1| hypothetical protein BACDOR_02314 [Bacteroides dorei DSM 17855]
          Length = 304

 Score =  359 bits (922), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 108/304 (35%), Positives = 165/304 (54%), Gaps = 16/304 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H+PVLL + +  +N  PG + +DATFG GG+S+         +++ + D+D  A      
Sbjct: 9   HIPVLLNESVDGMNIQPGGIYVDATFGGGGHSKEILSRLDSTAHLYSFDQDEDAEKNIVS 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +F+  ++ F  L +++    V   D ++ DLGVSS   D  +RGFSF+  G L
Sbjct: 69  -----DSRFTFVRSNFRYLSNFLRYYDVEEVDAILADLGVSSHHFDDSERGFSFRFEGKL 123

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  +G++A+DVVN  + + L  I  + GE K + ++A  IVK R      T  D  
Sbjct: 124 DMRMNKRAGMTAADVVNTYDEERLANIFYLYGELKNSHKLASTIVKARGVKQIITIGDFL 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I+    F +        + FQALRI VN E+E L + L +A KALK GG L+V+++HS
Sbjct: 184 EVIKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLYAAAKALKPGGRLVVITYHS 241

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK    + + +  A +    +   P  F+ +  KV+V   E+V  N RSRSAKLR
Sbjct: 242 LEDRMVKNIMKTGNIEGKAEQDFFGNVQTP--FKLVNSKVIVAGNEEVTCNPRSRSAKLR 299

Query: 313 AGMR 316
              +
Sbjct: 300 IAEK 303


>gi|327404192|ref|YP_004345030.1| Ribosomal RNA small subunit methyltransferase H [Fluviicola
           taffensis DSM 16823]
 gi|327319700|gb|AEA44192.1| Ribosomal RNA small subunit methyltransferase H [Fluviicola
           taffensis DSM 16823]
          Length = 308

 Score =  359 bits (922), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 103/313 (32%), Positives = 160/313 (51%), Gaps = 16/313 (5%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFA 70
           ++    HVPV+L++ +  L   P  + +D TFG GG+SR+          +I  D+DP A
Sbjct: 3   NNDATYHVPVMLQECLDGLVINPDGIYVDVTFGGGGHSRAIFEKLSPKGKLIVFDQDPDA 62

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSF 127
            +   E        F    A F+ L++++   G   VDG++ DLGVSS Q D   RGFS 
Sbjct: 63  RANAWE-----APNFHFVAANFAFLRNHLRVMGIPAVDGILADLGVSSHQFDDAKRGFSI 117

Query: 128 QKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           + +  LDMRM+ +G  +A+ +V   + + L  I    GE     + A  +VK R  +  +
Sbjct: 118 RSNEVLDMRMNQAGDFTAAKIVQTYDEEQLAAIFRKYGELDHPFKTAVELVKARNKSKIK 177

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           TT +L   +       K+++     + FQALRI VN E++ L + L     +LK  G L+
Sbjct: 178 TTGELMEALMPVAPKFKDHK--FFAQVFQALRIEVNQEMDVLEKFLLQTADSLKPDGRLV 235

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+S+HSLEDRLVK      S      +        P  F+ I +K ++P++E++  N R+
Sbjct: 236 VMSYHSLEDRLVKNLMKRGSLDGSIEKDFFGKVLKP--FEEINRKPILPSEEEIQRNTRA 293

Query: 307 RSAKLRAGMRTVE 319
           RSAKLR   R  +
Sbjct: 294 RSAKLRIAKRVED 306


>gi|253997377|ref|YP_003049441.1| S-adenosyl-methyltransferase MraW [Methylotenera mobilis JLW8]
 gi|253984056|gb|ACT48914.1| S-adenosyl-methyltransferase MraW [Methylotenera mobilis JLW8]
          Length = 360

 Score =  359 bits (922), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 116/317 (36%), Positives = 169/317 (53%), Gaps = 17/317 (5%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDR 66
           SSA+H     H+ VLL + +  L+  P  + +D TFG GG+SR           +IA DR
Sbjct: 49  SSAVH----AHITVLLNEAVRALDIKPNGIYVDGTFGRGGHSRKILAQLGDAGRLIAFDR 104

Query: 67  DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDR 123
           D  A+  G+        +F+L  + F+ ++  + + GV   DG++ DLG+SS QID  +R
Sbjct: 105 DLAAIEAGK---AIDDPRFTLVHSHFADMRKRLAELGVQHVDGILLDLGISSPQIDEAER 161

Query: 124 GFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GFSF+   PLDMRM  S G +A+D + +   + L  ++   GEE+ A  IA AI+  R  
Sbjct: 162 GFSFRYDAPLDMRMDQSSGETAADFLGRTTEQQLAEVIKNYGEERFAKSIARAIIAERND 221

Query: 183 AP-FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
                TT  L+ ++   V   +  + +PATR+FQALRIFVN E+EEL+  +    + L  
Sbjct: 222 GRAITTTGQLAQIVAGAVTRFEPGQ-NPATRTFQALRIFVNQELEELSLTMPQCLELLAP 280

Query: 242 GGLLIVVSFHSLEDRLVKKFFA-SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300
            G L ++SFHSLEDR+VK+F         +     + +   P        K V P+ E+V
Sbjct: 281 HGRLAIISFHSLEDRMVKQFIRGQEDRDDLPANFPVRAADLPQPRLKSVGKAVKPSDEEV 340

Query: 301 AFNRRSRSAKLRAGMRT 317
             N RSRSA LR   RT
Sbjct: 341 RSNPRSRSAVLRVAERT 357


>gi|52841149|ref|YP_094948.1| S-adenosyl-methyltransferase MraW [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52628260|gb|AAU27001.1| S-adenosylmethyl transferase MraW [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 334

 Score =  359 bits (922), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 116/312 (37%), Positives = 168/312 (53%), Gaps = 12/312 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
            +  H  VLL + I  L      +  D TFG GG+SR           + A+D+D  AV 
Sbjct: 26  EMAKHQSVLLHESIKGLAIKADGIYFDGTFGRGGHSREILNHLSDKGRLFAIDKDLDAVQ 85

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKGV----DGVVFDLGVSSMQIDCGDRGFSFQ 128
             ++      ++F +F  +F+Q++++    GV    DG++ DLGVSS Q+D  +RGFSF 
Sbjct: 86  YAKDYF-GLDKRFQIFHGSFAQIKEFASQAGVIGAVDGILLDLGVSSPQLDNPERGFSFM 144

Query: 129 KSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
             GPLDMRM     I+A++ VN+A V +L  +    GEE+ A RIA AIV  R+  P  T
Sbjct: 145 LQGPLDMRMDLTQSINAANFVNEAEVNELAHVFRAYGEERFAGRIAKAIVDARKLKPITT 204

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T +L+ ++++     + ++ HPATR FQA+RI VN E+ +L+  L      L  GG L V
Sbjct: 205 TLELAEIVKEANPKWEKHK-HPATRVFQAIRIHVNQELTDLSNCLEQCLDVLGPGGRLAV 263

Query: 248 VSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           +SFHSLEDR+VK+F   +  G    V   I        F+ +  K V P   ++  N RS
Sbjct: 264 ISFHSLEDRIVKQFMRDKEQGNRPPVEVPIKYEELKTNFKKV-GKAVKPQSSEIKENVRS 322

Query: 307 RSAKLRAGMRTV 318
           RSA LR G +  
Sbjct: 323 RSAVLRIGEKLA 334


>gi|54293889|ref|YP_126304.1| hypothetical protein lpl0945 [Legionella pneumophila str. Lens]
 gi|54296934|ref|YP_123303.1| S-adenosyl-methyltransferase MraW [Legionella pneumophila str.
           Paris]
 gi|68565457|sp|Q5WXZ4|RSMH_LEGPL RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|68565459|sp|Q5X6J0|RSMH_LEGPA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|68565463|sp|Q5ZX19|RSMH_LEGPH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|53750719|emb|CAH12126.1| hypothetical protein lpp0975 [Legionella pneumophila str. Paris]
 gi|53753721|emb|CAH15179.1| hypothetical protein lpl0945 [Legionella pneumophila str. Lens]
          Length = 308

 Score =  359 bits (922), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 116/311 (37%), Positives = 168/311 (54%), Gaps = 12/311 (3%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H  VLL + I  L      +  D TFG GG+SR           + A+D+D  AV  
Sbjct: 1   MAKHQSVLLHESIKGLAIKADGIYFDGTFGRGGHSREILNHLSDKGRLFAIDKDLDAVQY 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGV----DGVVFDLGVSSMQIDCGDRGFSFQK 129
            ++      ++F +F  +F+Q++++    GV    DG++ DLGVSS Q+D  +RGFSF  
Sbjct: 61  AKDYF-GLDKRFQIFHGSFAQIKEFASQAGVIGAVDGILLDLGVSSPQLDNPERGFSFML 119

Query: 130 SGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM     I+A++ VN+A V +L  +    GEE+ A RIA AIV  R+  P  TT
Sbjct: 120 QGPLDMRMDLTQSINAANFVNEAEVNELAHVFRAYGEERFAGRIAKAIVDARKLKPITTT 179

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ ++++     + ++ HPATR FQA+RI VN E+ +L+  L      L  GG L V+
Sbjct: 180 LELAEIVKEANPKWEKHK-HPATRVFQAIRIHVNQELTDLSNCLEQCLDVLGPGGRLAVI 238

Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           SFHSLEDR+VK+F   +  G    V   I        F+ +  K V P   ++  N RSR
Sbjct: 239 SFHSLEDRIVKQFMRDKEQGNRPPVEVPIKYEELKTNFKKV-GKAVKPQSSEIKENVRSR 297

Query: 308 SAKLRAGMRTV 318
           SA LR G +  
Sbjct: 298 SAVLRIGEKLA 308


>gi|117922183|ref|YP_871375.1| S-adenosyl-methyltransferase MraW [Shewanella sp. ANA-3]
 gi|262826555|sp|A0L1Q0|RSMH_SHESA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|117614515|gb|ABK49969.1| S-adenosyl-methyltransferase MraW [Shewanella sp. ANA-3]
          Length = 313

 Score =  359 bits (922), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 116/307 (37%), Positives = 172/307 (56%), Gaps = 13/307 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H+ VLLE+ +  LN     + +D TFG GG+SR   +       +IA+DRDP A+   ++
Sbjct: 7   HLSVLLEETVGGLNIKDDGIYIDGTFGRGGHSRQVLQRLGENGRLIAIDRDPQAIEAAKQ 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              D   +F +    F QL DYV + G    +DGV+ DLGVSS Q+D  +RGFSF + GP
Sbjct: 67  FADD--PRFQIVHGGFGQLADYVEELGLVGKIDGVLLDLGVSSPQLDDAERGFSFLRDGP 124

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G +A+  + +A ++D+  +    GEEK A  IA  I   R   PF  T+DL
Sbjct: 125 LDMRMDNSQGETAAQWLARAEIEDMAWVFKTYGEEKNARHIARCIAADRDKTPFLRTKDL 184

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI +     + N+ HPATR FQA+RI++N+E++++ Q L  A   L   G L ++SFH
Sbjct: 185 ADLIARITKNKERNK-HPATRVFQAIRIYINSELDQIDQALEGALTILAPQGRLSIISFH 243

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI--TKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK+F    S        +  +       + +    K ++P+ E++  N R+RS+
Sbjct: 244 SLEDRIVKRFIRRHSQGESVPHGLPITEDQINKSRKLRAIGKAIMPSDEEIERNARARSS 303

Query: 310 KLRAGMR 316
            LR   R
Sbjct: 304 VLRIAER 310


>gi|238791165|ref|ZP_04634804.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia
           intermedia ATCC 29909]
 gi|238729298|gb|EEQ20813.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia
           intermedia ATCC 29909]
          Length = 320

 Score =  359 bits (922), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 121/312 (38%), Positives = 175/312 (56%), Gaps = 15/312 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H  VLL++ +  LN     + +D TFG GG+SR           +IA+DRDP A+   +
Sbjct: 13  KHTSVLLDEAVNGLNIRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDRDPQAIEAAK 72

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +FS+    FS+L  YV +      +DGV+ DLGVSS Q+D  +RGFSF + G
Sbjct: 73  SI---TDPRFSIVHGPFSELAHYVRELDLVGRIDGVLLDLGVSSPQLDDPERGFSFMRDG 129

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  S G+SA++ + +A+  D+  +L   GEE+ A R+A AIV+R  + P   T++
Sbjct: 130 PLDMRMDPSRGLSAAEWLMKASADDIAWVLKTFGEERFAKRLAKAIVERNLTQPMTRTKE 189

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ LI     F + ++ HPATRSFQA+RI++N+E+EE+ + L  A + L   G L V+SF
Sbjct: 190 LADLIANASPFREKHK-HPATRSFQAIRIYINSELEEIERALDGALEVLAPAGRLSVISF 248

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV---VVPTQEDVAFNRRSR 307
           HSLEDR+VK F    S        +  + A        T K    ++P   +VA N R+R
Sbjct: 249 HSLEDRIVKNFIRHHSRGPQVPAGLPLTEAQLRSMGGRTLKSAGKMMPPDAEVAENPRAR 308

Query: 308 SAKLRAGMRTVE 319
           S+ LR   R  E
Sbjct: 309 SSVLRFAERIKE 320


>gi|237716641|ref|ZP_04547122.1| S-adenosyl-methyltransferase mraW [Bacteroides sp. D1]
 gi|262405416|ref|ZP_06081966.1| MraW methylase [Bacteroides sp. 2_1_22]
 gi|294809136|ref|ZP_06767854.1| S-adenosyl-methyltransferase MraW [Bacteroides xylanisolvens SD CC
           1b]
 gi|229442624|gb|EEO48415.1| S-adenosyl-methyltransferase mraW [Bacteroides sp. D1]
 gi|262356291|gb|EEZ05381.1| MraW methylase [Bacteroides sp. 2_1_22]
 gi|294443690|gb|EFG12439.1| S-adenosyl-methyltransferase MraW [Bacteroides xylanisolvens SD CC
           1b]
          Length = 304

 Score =  359 bits (922), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 107/304 (35%), Positives = 162/304 (53%), Gaps = 16/304 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HVPVLL++ +  +N  P    +D TFG  G+SR        G  ++  D+D  A     E
Sbjct: 9   HVPVLLKESVDGMNIQPDGTYVDVTFGGAGHSREILSRLGEGGRLLGFDQDEDA-----E 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                   F   ++ F  LQ+++       VD ++ DLGVSS   D  +RGFSF+  G L
Sbjct: 64  RNIVNDPHFIFVRSNFRYLQNFLRYHDIEQVDAILADLGVSSHHFDDSERGFSFRFDGAL 123

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  +GI+A+D+VN    + L  +L + GE K + ++A  IVK R     +T  +  
Sbjct: 124 DMRMNKRAGITAADIVNTYEEERLANLLYLYGELKNSRKLASVIVKARSGQYIRTIGEFL 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I+    F +        + FQALRI VN E+E L + L +A +ALK GG L+V+++HS
Sbjct: 184 EIIKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLLAATEALKPGGRLVVITYHS 241

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK    + + +  A      +   P  F+ +  KV+VP + ++  N RSRSAKLR
Sbjct: 242 LEDRMVKNIMKTGNVEGKAESDFFGNLQTP--FRLVNNKVIVPDEAEIERNPRSRSAKLR 299

Query: 313 AGMR 316
              +
Sbjct: 300 IAEK 303


>gi|261378431|ref|ZP_05983004.1| S-adenosyl-methyltransferase MraW [Neisseria cinerea ATCC 14685]
 gi|269145209|gb|EEZ71627.1| S-adenosyl-methyltransferase MraW [Neisseria cinerea ATCC 14685]
          Length = 319

 Score =  359 bits (922), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 117/324 (36%), Positives = 172/324 (53%), Gaps = 15/324 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           MS    +    H+ VLL + +  L      V +D TFG GG+SR           +I  D
Sbjct: 1   MSETEGYQ---HITVLLHEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDTGRLIVFD 57

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGD 122
           +DP A++  +E +    ++ S+    F+  Q  + D G   VDG +FDLGVSS QID   
Sbjct: 58  KDPQAIAVAEE-LARSDKRVSVVHGGFASFQTALDDLGIGDVDGALFDLGVSSPQIDDAV 116

Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF+   PLDMRM  + G+SA++ +  A+ +DL  ++   GEE+ + +IA AIV +R 
Sbjct: 117 RGFSFRFDAPLDMRMDTTRGMSAAEWIASASEQDLHEVIKNYGEERFSRQIARAIVAQRT 176

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
             P  TT  L+ +  + V   +  +  PATR+FQA+RIF+N E+EE+   L      LK 
Sbjct: 177 ENPIDTTGKLAKIAAENVRTRERGQ-DPATRTFQAVRIFINRELEEVEAVLPQVMCRLKE 235

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQED 299
           GG L V++FHSLEDR+VK+F    S      R      ++      +++  K + P +E+
Sbjct: 236 GGRLAVIAFHSLEDRIVKQFVRKYSQHAPLPRWAAVREADLPEPPLKAV-GKAIKPCEEE 294

Query: 300 VAFNRRSRSAKLRAGMRTVERSIE 323
              N R+RSA LR   RT     E
Sbjct: 295 TVANPRARSAVLRVAERTAGPIPE 318


>gi|50365212|ref|YP_053637.1| cell membrane substrate S-adenosyl-methyltransferase [Mesoplasma
           florum L1]
 gi|54036182|sp|Q6F170|RSMH_MESFL RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|50363768|gb|AAT75753.1| cell membrane substrate S-adenosyl-methyltransferase [Mesoplasma
           florum L1]
          Length = 308

 Score =  359 bits (922), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 107/310 (34%), Positives = 166/310 (53%), Gaps = 13/310 (4%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCG 74
           +  H+PVLL++ I  LN     + +D T G  G+S    K      + ++D+D  A+  G
Sbjct: 1   MEKHIPVLLKESIEYLNIKENGIYVDCTLGRAGHSSEILKKLKDGKLFSIDQDETAILEG 60

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            E +      F + +  F  +   +  +G   VDG+++DLGVSS Q D  +RGFS++  G
Sbjct: 61  TEKLTKISNNFKILEGNFVNISAMLAMQGIFEVDGILYDLGVSSPQFDVAERGFSYRFDG 120

Query: 132 PLDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
           PLDMRM    + ++A  +VN+   ++L +IL   G+EK A  IA  I+  R   P  TT 
Sbjct: 121 PLDMRMDRANNSLTAHKIVNEYTQEELEQILWNYGDEKFARSIAKNIILSR---PINTTF 177

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L S+I+K++       + HPA ++FQALRI VNNE+E L   L  +   LK  G ++V+
Sbjct: 178 ELVSVIKKSLPAKILKQQKHPAKKTFQALRIRVNNEMETLESSLEQSLNLLKPKGRVVVI 237

Query: 249 SFHSLEDRLVKKFFASRSGKVMA-VRHMIPSNAHPAV-FQSITKKVVVPTQEDVAFNRRS 306
           +FHSLE+++VK  F   +          +P     +  F+ + KK + PT  +V  N RS
Sbjct: 238 TFHSLEEKVVKNIFKKYTLDEQQFYLSNLPYEIESSKDFKLLFKKPLKPTNTEVENNNRS 297

Query: 307 RSAKLRAGMR 316
            SAKL    +
Sbjct: 298 HSAKLWVIEK 307


>gi|85712541|ref|ZP_01043589.1| S-adenosyl-methyltransferase [Idiomarina baltica OS145]
 gi|85693675|gb|EAQ31625.1| S-adenosyl-methyltransferase [Idiomarina baltica OS145]
          Length = 315

 Score =  359 bits (922), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 124/316 (39%), Positives = 181/316 (57%), Gaps = 13/316 (4%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69
           +      H+ VLLE+ I  L   P  + +DATFG GG++R+          VIALD+DP 
Sbjct: 1   MTEQNAPHISVLLEESIRALVTDPDGIYIDATFGRGGHTRALLSKLSPKGRVIALDQDPQ 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGF 125
           A++  Q    D  E+FS+    FS L   +        V G++FDLGVSS Q+D  +RGF
Sbjct: 61  AIASAQALADD--ERFSIIHTPFSDLAHIIEQQQLAHQVTGILFDLGVSSPQLDDAERGF 118

Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF + GPLDMRM  S G +A+D ++ A   D+T +L   GEE+ A +IA AIV  R+  P
Sbjct: 119 SFMRDGPLDMRMDSSRGETAADWLSYAEEDDITYVLKTYGEERFARKIARAIVHDREQKP 178

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           F  T+ L+ LI + V   + ++ HPATRSFQA+RI VN E+E++   L ++  ALK  G 
Sbjct: 179 FTRTRQLAELIGRLVPSKEKHK-HPATRSFQAIRIHVNRELEQIEDALEASLTALKEDGR 237

Query: 245 LIVVSFHSLEDRLVKKFFASRS--GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           L+V+SFHSLEDR+VK+F  + S   +V     +  +  +     ++  K + P+  ++  
Sbjct: 238 LVVISFHSLEDRIVKRFMRTHSQPKQVPPGLPITEAELNKDRRLALESKAIKPSAAELEL 297

Query: 303 NRRSRSAKLRAGMRTV 318
           N R+RS+ LR   R  
Sbjct: 298 NPRARSSVLRIARRLA 313


>gi|167622387|ref|YP_001672681.1| S-adenosyl-methyltransferase MraW [Shewanella halifaxensis HAW-EB4]
 gi|262826525|sp|B0TQM9|RSMH_SHEHH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|167352409|gb|ABZ75022.1| S-adenosyl-methyltransferase MraW [Shewanella halifaxensis HAW-EB4]
          Length = 315

 Score =  359 bits (922), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 119/308 (38%), Positives = 175/308 (56%), Gaps = 13/308 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
           +H+ VLL + +A LN  P  + +D TFG GG+SR   +       +IA+DRDP A++   
Sbjct: 6   EHLSVLLTETVAGLNIKPDGIYIDGTFGRGGHSRKVLEELGPNGRLIAIDRDPQAIAAA- 64

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           E  +D   +F +    F QL DYV D G    +DGV+ D GVSS Q+D  +RGFSF + G
Sbjct: 65  EQFKD-DSRFQIVHGGFGQLADYVEDLGLKGKIDGVLLDFGVSSPQLDDAERGFSFLRDG 123

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  S G +A+  + +A ++D+  +    GEEK +  IA  I   R+ APF  T++
Sbjct: 124 PLDMRMDNSQGQTAAQWLARAEIEDMAWVFKTYGEEKNSRHIARCIAADREKAPFLRTKE 183

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ LI +     + N+ HPATR FQA+RI++N+E+E++ Q L  A   L   G L V+SF
Sbjct: 184 LADLIARITKNKERNK-HPATRVFQAIRIYINSELEQIDQALEGALTVLAPEGRLSVISF 242

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI--TKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+VK+F    S        +  +       + +    K + P+ E++  N R+RS
Sbjct: 243 HSLEDRMVKRFIRRNSQGESVPHGLPITEEEINKSRKLKGVGKAIKPSAEEIERNARARS 302

Query: 309 AKLRAGMR 316
           + LR   R
Sbjct: 303 SVLRIAQR 310


>gi|119773487|ref|YP_926227.1| S-adenosyl-methyltransferase MraW [Shewanella amazonensis SB2B]
 gi|262826482|sp|A1S2F1|RSMH_SHEAM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|119765987|gb|ABL98557.1| methyltransferase [Shewanella amazonensis SB2B]
          Length = 313

 Score =  359 bits (921), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 114/307 (37%), Positives = 171/307 (55%), Gaps = 13/307 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H+ VLL + +  LN     + +D TFG GG+SR           +IA+DRDP A+   ++
Sbjct: 7   HLSVLLAETVDGLNIRADGIYIDGTFGRGGHSREVLSRLGVDGRLIAIDRDPQAIKAAEQ 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              D   +F +    F QL +YV + G    +DGV+ DLGVSS Q+D  +RGFSF + GP
Sbjct: 67  FAND--SRFQIVHGGFGQLANYVEELGLVGKIDGVLLDLGVSSPQLDDAERGFSFLRDGP 124

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G +A+  + +A ++D+  +    GEE+ A  IA  I   R+  PF  T+ L
Sbjct: 125 LDMRMDNSQGETAAQWLARAEIEDMAWVFKTYGEERNARHIARCIAADREKTPFTRTKQL 184

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI +     + N+ HPATR FQA+RI++N+E+E++ Q L  A K L   G L ++SFH
Sbjct: 185 ADLIARVAKSKERNK-HPATRVFQAIRIYINSELEQIDQALEGALKVLAPHGRLSIISFH 243

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI--TKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK+F    S        +  + A     +++    K + P+  ++  N R+RS+
Sbjct: 244 SLEDRIVKRFIRRHSQGEELPHGLPVTEAQLNKSRTLMPVGKAMKPSDVEIEQNARARSS 303

Query: 310 KLRAGMR 316
            LR   R
Sbjct: 304 VLRVAER 310


>gi|294646197|ref|ZP_06723851.1| S-adenosyl-methyltransferase MraW [Bacteroides ovatus SD CC 2a]
 gi|292638415|gb|EFF56779.1| S-adenosyl-methyltransferase MraW [Bacteroides ovatus SD CC 2a]
          Length = 309

 Score =  359 bits (921), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 107/304 (35%), Positives = 162/304 (53%), Gaps = 16/304 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HVPVLL++ +  +N  P    +D TFG  G+SR        G  ++  D+D  A     E
Sbjct: 14  HVPVLLKESVDGMNIQPDGTYVDVTFGGAGHSREILSRLGEGGRLLGFDQDEDA-----E 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                   F   ++ F  LQ+++       VD ++ DLGVSS   D  +RGFSF+  G L
Sbjct: 69  RNIVNDPHFIFVRSNFRYLQNFLRYHDIEQVDAILADLGVSSHHFDDSERGFSFRFDGAL 128

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  +GI+A+D+VN    + L  +L + GE K + ++A  IVK R     +T  +  
Sbjct: 129 DMRMNKRAGITAADIVNTYEEERLANLLYLYGELKNSRKLASVIVKARSGQYIRTIGEFL 188

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I+    F +        + FQALRI VN E+E L + L +A +ALK GG L+V+++HS
Sbjct: 189 EIIKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLLAATEALKPGGRLVVITYHS 246

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK    + + +  A      +   P  F+ +  KV+VP + ++  N RSRSAKLR
Sbjct: 247 LEDRMVKNIMKTGNVEGKAESDFFGNLQTP--FRLVNNKVIVPDEAEIERNPRSRSAKLR 304

Query: 313 AGMR 316
              +
Sbjct: 305 IAEK 308


>gi|160883877|ref|ZP_02064880.1| hypothetical protein BACOVA_01850 [Bacteroides ovatus ATCC 8483]
 gi|156110607|gb|EDO12352.1| hypothetical protein BACOVA_01850 [Bacteroides ovatus ATCC 8483]
          Length = 309

 Score =  359 bits (921), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 106/304 (34%), Positives = 162/304 (53%), Gaps = 16/304 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HVPVLL++ +  +N  P    +D TFG  G+SR        G  ++  D+D  A     E
Sbjct: 14  HVPVLLKESVDGMNIQPDGTYVDVTFGGAGHSREILSRLGEGGRLLGFDQDEDA-----E 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                   F   ++ F  L +++       VD ++ DLGVSS   D  +RGFSF+  G L
Sbjct: 69  RNIVNDTHFIFVRSNFRYLHNFLRYHNIEQVDAILADLGVSSHHFDDSERGFSFRFDGAL 128

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  +G++A+D+VN  + + L  IL + GE K + ++A  IVK R     +T  +  
Sbjct: 129 DMRMNKRAGMTAADIVNTYDEERLANILYLYGELKNSRKLASVIVKARSGQNIRTIGEFL 188

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I+    F +        + FQALRI VN E+E L + L +A +ALK GG L+V+++HS
Sbjct: 189 EVIKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLLAATEALKPGGRLVVITYHS 246

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK    + + +  A      +   P  F+ +  KV+VP + ++  N RSRSAKLR
Sbjct: 247 LEDRMVKNIMKTGNVEGKAETDFFGNLQTP--FRLVNNKVIVPDEAEIERNPRSRSAKLR 304

Query: 313 AGMR 316
              +
Sbjct: 305 IAEK 308


>gi|257483456|ref|ZP_05637497.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|289624974|ref|ZP_06457928.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|289647032|ref|ZP_06478375.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|298488527|ref|ZP_07006557.1| 16S rRNA m(4)C1402 methyltransferase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298156868|gb|EFH97958.1| 16S rRNA m(4)C1402 methyltransferase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|330868707|gb|EGH03416.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv.
           aesculi str. 0893_23]
 gi|330987126|gb|EGH85229.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331011570|gb|EGH91626.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 313

 Score =  359 bits (921), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 114/307 (37%), Positives = 174/307 (56%), Gaps = 12/307 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H+ VLLE+ +  L        LD TFG GG+SR           ++  D+DP A++ GQ 
Sbjct: 7   HITVLLEEAVEALAVRADGCYLDGTFGRGGHSRLILSQLGPDGRLLGFDKDPQAIATGQA 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            +     +F + Q +F++L     ++G    V G++ DLGVSS Q+D  +RGFSF   GP
Sbjct: 67  -LAAEDGRFVIVQRSFAELGSEAQERGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDGP 125

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G+SA++ +  A  +++ R+    GEE+ A R+A+A+V RR+  PF+ T DL
Sbjct: 126 LDMRMDPTRGVSAAEFIATAPAEEIARVFKEYGEERFAKRMANAVVARREVQPFERTADL 185

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + +++      +  + +PATR+FQ LRI VNNE+ +L  GL +A  AL+ GG L+V+SFH
Sbjct: 186 AEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLVVISFH 244

Query: 252 SLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK F    + G+   +   +P    P   +  I  K    +  +   N RSRSA
Sbjct: 245 SLEDRIVKLFMRKLAKGEADNMPRNLPIQFKPFEPKIKIHGKAQFASDTETKANPRSRSA 304

Query: 310 KLRAGMR 316
            +R   +
Sbjct: 305 VMRVAEK 311


>gi|192361777|ref|YP_001983393.1| S-adenosyl-methyltransferase MraW [Cellvibrio japonicus Ueda107]
 gi|263445770|sp|B3PCM8|RSMH_CELJU RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|190687942|gb|ACE85620.1| S-adenosyl-methyltransferase MraW [Cellvibrio japonicus Ueda107]
          Length = 309

 Score =  359 bits (921), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 111/306 (36%), Positives = 168/306 (54%), Gaps = 10/306 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            HV VLL + +  L   P    +D TFG GG+S    +       ++A+D+D  A++  +
Sbjct: 5   PHVTVLLGEAVEALVSNPEGTYIDGTFGRGGHSALILQHLASEGRLLAIDKDLAAIATAR 64

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           E       +F++   +F+ L++   ++G    V G++ DLGVSS Q+D  +RGFSF + G
Sbjct: 65  EKFAT-DARFAIAHDSFASLKNLAAERGLVGRVQGILLDLGVSSPQLDEAERGFSFMQDG 123

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + G SA++ VN A+  ++  +L   GEE+ A R+A AI+  RQ  PF  T  
Sbjct: 124 PLDMRMDQTRGPSAAEWVNTASEDEIAWVLREYGEERFAKRMARAIIAERQKRPFVRTGH 183

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ +I+      +  + HPATR+FQA+RI VN E+E+L   L  A   L  GG L+V+SF
Sbjct: 184 LAEVIKAANPAWEKGK-HPATRAFQAIRIQVNRELEDLEAVLAQAVDVLAPGGRLVVISF 242

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDRLVK+F   +       + +    A          K +  + ++V  N RSRSA 
Sbjct: 243 HSLEDRLVKRFIRQQEQGDPVPKGLPLREAQLNKTMRSLGKAMKASDQEVEANVRSRSAV 302

Query: 311 LRAGMR 316
           +R   +
Sbjct: 303 MRVAEK 308


>gi|145600350|ref|YP_001164426.1| S-adenosyl-methyltransferase MraW [Yersinia pestis Pestoides F]
 gi|263504690|sp|A4TQ91|RSMH_YERPP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|145212046|gb|ABP41453.1| hypothetical protein YPDSF_3095 [Yersinia pestis Pestoides F]
          Length = 318

 Score =  359 bits (921), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 120/314 (38%), Positives = 174/314 (55%), Gaps = 21/314 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H  VLL++ +  LN     + +D TFG GG+SR           +IA+DRDP A+   +
Sbjct: 13  KHTSVLLDEAVKGLNIRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDRDPEAIEAAK 72

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +       +FS+    FS L  YV D      +DG++ DLGVSS Q+D  +RGFSF + G
Sbjct: 73  QI---TDPRFSIVHGPFSDLAHYVRDLDLVGRIDGILLDLGVSSPQLDDAERGFSFMRDG 129

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  S G+SA++ + +A+  D+  +L   GEE+ A R+A AIV+R  + P   T++
Sbjct: 130 PLDMRMDPSRGLSAAEWLMKASADDIAWVLKTFGEERFAKRLAKAIVERNLTQPMTRTKE 189

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ LI     F      HPATRSFQA+RI++N+E+EE+ + L  A + L   G L V+SF
Sbjct: 190 LADLIANASPFR---DKHPATRSFQAIRIYINSELEEIERALDGAHEVLAPEGRLSVISF 246

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNRR 305
           HSLEDR+VK F    S        +  + A          +S+ K  ++P   ++A N R
Sbjct: 247 HSLEDRIVKNFIRHHSRGPQVPAGLPLTEAQLRSMGGRTLKSVGK--MMPGDAEIAENPR 304

Query: 306 SRSAKLRAGMRTVE 319
           +RS+ LR   R  E
Sbjct: 305 ARSSVLRFAERIGE 318


>gi|78046379|ref|YP_362554.1| S-adenosyl-methyltransferase MraW [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|88909226|sp|Q3BXF9|RSMH_XANC5 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|78034809|emb|CAJ22454.1| S-adenosyl-methyltransferase [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 337

 Score =  359 bits (921), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 117/308 (37%), Positives = 171/308 (55%), Gaps = 7/308 (2%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69
           +      HVPVL  +V+  L        LD TFG GG++R   +    G  ++ +D+DP 
Sbjct: 1   MSQPPAAHVPVLYTQVLDGLQVTENGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDPE 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
           A++   E       + S+ + +F+ L   V    VDG++ DLGVSS Q+D   RGFSF K
Sbjct: 61  AIAVA-EHSFGGDARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLDVAGRGFSFGK 119

Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM   +G SA+  + QA+ +++  +L   GEE+Q+ RIA AIV RR   P   T
Sbjct: 120 DGPLDMRMDPDNGQSAAQWLAQASEREIADVLWTYGEERQSRRIARAIVARRAEQPLLRT 179

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ LI   +    +++ HPATRSFQA+RI +N E+ +L  GL +A  ALK GG L V+
Sbjct: 180 AQLADLIASVMPRG-DSKTHPATRSFQAIRIHINRELADLEAGLDAALDALKPGGRLAVI 238

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDR+VK+F A  +    + R +  +       Q ++   +     ++  N R+RS
Sbjct: 239 SFHSLEDRIVKQFMARYAKAPPSNRRLPEAQPFVPTLQLVS-GAIKADDAELNVNPRARS 297

Query: 309 AKLRAGMR 316
           A LR   +
Sbjct: 298 AVLRVAEK 305


>gi|319424760|gb|ADV52834.1| S-adenosyl-methyltransferase MraW [Shewanella putrefaciens 200]
          Length = 313

 Score =  359 bits (921), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 116/307 (37%), Positives = 171/307 (55%), Gaps = 13/307 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H+ VLL + +  LN     + +D TFG GG+SR   +       +IA+DRDP A+   ++
Sbjct: 7   HLSVLLAETVGGLNIKDDGIYIDGTFGRGGHSRQILQRLGDNGRLIAIDRDPQAIEAAKQ 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              D   +F +    F QL DYV D G    +DGV+ DLGVSS Q+D  +RGFSF + GP
Sbjct: 67  FSDD--PRFQIVHGGFGQLADYVEDLGLVGKIDGVLLDLGVSSPQLDDAERGFSFLRDGP 124

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G +A+  + +A ++D+  +    GEEK A  IA  I   R   PF  T+DL
Sbjct: 125 LDMRMDNSQGQTAAQWLARAEIEDMAWVFKTYGEEKNARHIARCIAADRDKTPFLRTKDL 184

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI +     + N+ HPATR FQA+RI++N+E++++ Q L  A   L   G L ++SFH
Sbjct: 185 ADLIVRITKNKERNK-HPATRVFQAIRIYINSELDQIDQALEGALAVLAPQGRLSIISFH 243

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI--TKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK+F    S        +  +       + +    K ++P+ E++  N R+RS+
Sbjct: 244 SLEDRIVKRFIRRHSQGESVPYGLPITEDQINKSRKLRAIGKAIMPSDEEIERNARARSS 303

Query: 310 KLRAGMR 316
            LR   R
Sbjct: 304 VLRIAER 310


>gi|198274315|ref|ZP_03206847.1| hypothetical protein BACPLE_00459 [Bacteroides plebeius DSM 17135]
 gi|198272805|gb|EDY97074.1| hypothetical protein BACPLE_00459 [Bacteroides plebeius DSM 17135]
          Length = 304

 Score =  359 bits (921), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 103/304 (33%), Positives = 169/304 (55%), Gaps = 16/304 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H+PVLL + I  ++   G   +D TFG GG+SR   +     S + + D+D  A     E
Sbjct: 9   HIPVLLHESIEGMHLQSGGTYVDVTFGGGGHSREILRNMDDKSRLFSFDQDADA-----E 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                 ++F+  ++ F  L +++   GV   D ++ DLGVSS   D  +RGFSF+  G L
Sbjct: 64  RNIINDKRFTFVRSNFRYLHNFLRYYGVEEVDAILADLGVSSHHFDDSERGFSFRFDGKL 123

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  +GI+A+D++N    + L  +  + GE K + ++A  +VK R   P +T  +  
Sbjct: 124 DMRMNKRAGITAADIINTYEEEKLADLFYLYGELKNSRKLAATLVKARAQKPVETIGEFI 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +++    + +        + FQALRI VN E+E L + L +A +ALK GG L+V+++HS
Sbjct: 184 EIVKPL--YGREREKKEMAKVFQALRIEVNQEMEALKEMLYAATEALKPGGRLVVITYHS 241

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK    + + +  A +    +   P  F+ I  KV++P+++++  N RSRSAKLR
Sbjct: 242 LEDRMVKNIMKTGNIEGKAKQDFFGNVETP--FKLINNKVIIPSEDEIQRNPRSRSAKLR 299

Query: 313 AGMR 316
              +
Sbjct: 300 IAEK 303


>gi|24375712|ref|NP_719755.1| S-adenosyl-methyltransferase MraW [Shewanella oneidensis MR-1]
 gi|30173050|sp|Q8E9P0|RSMH_SHEON RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|24350646|gb|AAN57199.1|AE015855_10 conserved hypothetical protein TIGR00006 [Shewanella oneidensis
           MR-1]
          Length = 313

 Score =  359 bits (921), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 117/307 (38%), Positives = 172/307 (56%), Gaps = 13/307 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H+ VLLE+ +  LN     + +D TFG GG+SR   +       +IA+DRDP A+   ++
Sbjct: 7   HLSVLLEETVGGLNIKDDGIYIDGTFGRGGHSRQVLQRLGEKGRLIAIDRDPQAIEAAKQ 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              D   +F +    F QL DYV D G    +DGV+ DLGVSS Q+D  +RGFSF + GP
Sbjct: 67  FADD--PRFQIVHGGFGQLADYVEDLGLVGKIDGVLLDLGVSSPQLDDAERGFSFLRDGP 124

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G +A+  + +A ++D+  +    GEEK A  IA  I   R   PF  T+DL
Sbjct: 125 LDMRMDNSQGETAAQWLARAEIEDMAWVFKTYGEEKNARHIARCIAADRDKTPFLRTKDL 184

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI +     + N+ HPATR FQA+RI++N+E++++ Q L  A   L   G L ++SFH
Sbjct: 185 ADLIARITKNKERNK-HPATRVFQAIRIYINSELDQIDQALEGALTVLAPQGRLSIISFH 243

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI--TKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK+F    S        +  +       + +    K ++P+ E++  N R+RS+
Sbjct: 244 SLEDRIVKRFIRRHSQGESVPHGLPITEDQINKSRKLRAIGKAIMPSDEEIERNARARSS 303

Query: 310 KLRAGMR 316
            LR   R
Sbjct: 304 VLRIAER 310


>gi|262831557|sp|A9M2I4|RSMH_NEIM0 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 328

 Score =  359 bits (921), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 118/323 (36%), Positives = 173/323 (53%), Gaps = 13/323 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           MS A  +    H+ VLL + +  L      V +D TFG GG+SR           +I  D
Sbjct: 1   MSGAESY---RHITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFD 57

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGD 122
           +DP A++  +E +    ++  +    F+  Q  +   G   VDG +FDLG+SS QID G 
Sbjct: 58  KDPQAIAVAEE-LARSDKRVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGS 116

Query: 123 RGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF+   PLDMRM    G+SA++ +  A+ +DL  ++   GEE+ + +IA AIV +R 
Sbjct: 117 RGFSFRFDAPLDMRMDTMRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRA 176

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            +P  TT+ L+ ++ + V   +  +  PATR+FQA+RIF+N E+EE+   L      LK 
Sbjct: 177 ESPIDTTRKLAQIVAQNVRTRERGQ-DPATRTFQAIRIFINRELEEVGAVLPQVMCRLKE 235

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDV 300
           GG L V++FHSLEDR+VK+F    S      R      A  P     I  + + P + ++
Sbjct: 236 GGRLAVIAFHSLEDRIVKQFVKKYSQHAPLPRWAAVREADLPEPPLKIAGRALKPGEAEI 295

Query: 301 AFNRRSRSAKLRAGMRTVERSIE 323
           A N R+RSA LR   RT     E
Sbjct: 296 AANPRARSAVLRVAERTAGPIPE 318


>gi|330859314|emb|CBX69661.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia
           enterocolitica W22703]
          Length = 320

 Score =  359 bits (921), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 120/314 (38%), Positives = 176/314 (56%), Gaps = 19/314 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H  VLL++ +  LN     + +D TFG GG+SR           +IA+DRDP A+   +
Sbjct: 13  KHTSVLLDEAVNGLNIRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDRDPQAIEAAK 72

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +FS+    FS L  YV +      ++GV+ DLGVSS Q+D  +RGFSF + G
Sbjct: 73  SI---TDPRFSIVHGPFSDLAHYVRELDLVGRINGVLLDLGVSSPQLDDPERGFSFMRDG 129

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + GISA++ + +A+  D+  +L   GEE+ A R+A AIV+R  + P   T++
Sbjct: 130 PLDMRMDPTRGISAAEWLMKASADDIAWVLKTFGEERFAKRLAKAIVERNLTQPMTRTKE 189

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ LI     F + ++ HPATRSFQA+RI++N+E+EE+ + L  A + L   G L V+SF
Sbjct: 190 LADLIANASPFREKHK-HPATRSFQAIRIYINSELEEIERALDGALEVLAPEGRLSVISF 248

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNRR 305
           HSLEDR+VK F    S        +  + A          +S+ K  ++P   +VA N R
Sbjct: 249 HSLEDRIVKNFIRHHSRGPQVPAGLPLTEAQLRSMGGRTLKSVGK--MMPPDAEVAENPR 306

Query: 306 SRSAKLRAGMRTVE 319
           +RS+ LR   R  E
Sbjct: 307 ARSSVLRFAERIKE 320


>gi|88799431|ref|ZP_01115008.1| S-adenosyl-methyltransferase [Reinekea sp. MED297]
 gi|88777741|gb|EAR08939.1| S-adenosyl-methyltransferase [Reinekea sp. MED297]
          Length = 315

 Score =  359 bits (921), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 115/316 (36%), Positives = 172/316 (54%), Gaps = 12/316 (3%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           MS         H  VLL + +  ++     V +D TFG GG+SR         + +I  D
Sbjct: 1   MSLPSDQPYS-HETVLLHETVEAVDVGS-GVYVDGTFGRGGHSRLLLSRLDADARLIVFD 58

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCG 121
           +DP A++   E +     + ++ Q  F++L   +   G    V G++ DLGVSS Q+D  
Sbjct: 59  KDPLAIATANE-LAAEDSRVTVVQRGFAELSSVLKQAGLMGQVSGILLDLGVSSPQLDDA 117

Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF+  GPLDMRM+  SG SA+  + + + K+L  +L   G+E+ + RIA AIV  R
Sbjct: 118 ERGFSFRADGPLDMRMNPESGESAAQWIARVSEKELADVLFQYGDERFSRRIARAIVTAR 177

Query: 181 QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           Q  P + T  L+ +I+   +   +++ HPAT+SFQA+RI VN E++EL   L ++  ALK
Sbjct: 178 QKQPIERTLQLAEIIKTA-HPKWDHKKHPATKSFQAIRIAVNGELDELDAVLSASVGALK 236

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300
            GG L V+SFHSLEDR VK+F   ++        +   +    V      K +  + E+V
Sbjct: 237 PGGRLAVISFHSLEDRAVKQFIKLQAKGPELPPGLPVRDEDIHVTMKAVGKAIKASAEEV 296

Query: 301 AFNRRSRSAKLRAGMR 316
           A N RSRSA LR   +
Sbjct: 297 AVNVRSRSAVLRVAEK 312


>gi|290476461|ref|YP_003469366.1| S-adenosyl-dependent methyl transferase [Xenorhabdus bovienii
           SS-2004]
 gi|289175799|emb|CBJ82602.1| S-adenosyl-dependent methyl transferase [Xenorhabdus bovienii
           SS-2004]
          Length = 314

 Score =  359 bits (921), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 118/320 (36%), Positives = 178/320 (55%), Gaps = 19/320 (5%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPF 69
           + ++   H  VLL++ +  LN     + +D TFG GG+SR           +IA+DRDP 
Sbjct: 1   MANSHYKHTSVLLDEAVNGLNIRENGIYIDGTFGRGGHSRLILSQLGADGRLIAIDRDPQ 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGF 125
           A+   +        +FS+    FS+L  Y+ + G    +DGV+ DLGVSS Q+D  +RGF
Sbjct: 61  AIEAAK---AITDPRFSITHGPFSELATYIEEAGLVGKIDGVLLDLGVSSPQLDDPERGF 117

Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF + GPLDMRM  + G SA++ + +A   D+  +L   GEE+ A RIA AIV R Q   
Sbjct: 118 SFMRDGPLDMRMDPTRGQSATEWLMKAEADDIAWVLKTFGEERFAKRIARAIVARNQEGQ 177

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
              T++L+ LI +     + ++ HPATRSFQA+RI++N+E+EE+ + L  A + L   G 
Sbjct: 178 ITRTRELAELIAQASPVKEKHK-HPATRSFQAIRIYINSELEEIERALNGALQVLAPQGR 236

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQED 299
           L V+SFHSLEDR+VK+F    S        +  +            +SI K  + P++++
Sbjct: 237 LSVISFHSLEDRIVKRFIRQHSRGPQVPAGLPLTETQLKAQGGRSLKSIGK--LKPSEDE 294

Query: 300 VAFNRRSRSAKLRAGMRTVE 319
           V  N R+RS+ LR   +  E
Sbjct: 295 VVINPRARSSVLRFAEKAGE 314


>gi|326693783|ref|ZP_08230788.1| 16S rRNA m(4)C1402 methyltranserfase [Leuconostoc argentinum KCTC
           3773]
          Length = 313

 Score =  358 bits (920), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 109/311 (35%), Positives = 167/311 (53%), Gaps = 10/311 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73
           +  +HV VLL + +ALL+  P  + +DAT G GG++    K      + + D+D  A+  
Sbjct: 2   SEFEHVTVLLHEAVALLDIKPDGLYVDATLGGGGHTGEILKQLTTGTLYSFDQDDTAIQY 61

Query: 74  GQETMRD--YKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQ 128
             +   D     +  L    F  L+  + ++GV   DG+V+DLGVSS+Q D G RGFS+ 
Sbjct: 62  NTKQYADEIAAGKLVLIHQNFRTLKSALAERGVTAVDGIVYDLGVSSVQFDDGQRGFSYN 121

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
               LDMRM     ++A  +VN     DL RIL   GE++   +IA  I + R++ P  T
Sbjct: 122 YDAELDMRMDQRQTLTAKTIVNDWPFNDLLRILSRYGEDRFPKQIARKIEQHRENGPINT 181

Query: 188 TQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T +L  +I++ +   ++    HPA R+FQALRI VN+E+  L   L  A   L   G + 
Sbjct: 182 TFELVDIIKEAIPAPARRKGGHPAKRTFQALRIAVNDELGALEDSLTQAIDLLAPDGRIS 241

Query: 247 VVSFHSLEDRLVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           V++F SLEDRLVK+ F  ++    +     +      A +  +T+K ++P Q+++A N R
Sbjct: 242 VITFQSLEDRLVKQMFREKTTAPELPAGLPVLPGQFEADYTLLTRKPILPGQDEMADNHR 301

Query: 306 SRSAKLRAGMR 316
           S SAKLR   R
Sbjct: 302 SESAKLRGIAR 312


>gi|251792015|ref|YP_003006735.1| S-adenosyl-methyltransferase MraW [Aggregatibacter aphrophilus
           NJ8700]
 gi|263446623|sp|C6AKG2|RSMH_AGGAN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|247533402|gb|ACS96648.1| S-adenosyl-methyltransferase MraW [Aggregatibacter aphrophilus
           NJ8700]
          Length = 322

 Score =  358 bits (920), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 127/324 (39%), Positives = 176/324 (54%), Gaps = 20/324 (6%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M+     +  +H  VLL + +  L      + +D TFG GG+SR           +IA+D
Sbjct: 1   MTHLNAFSSVEHSTVLLHETVDGLALKENGIYIDGTFGRGGHSRLILSKLSANGKLIAID 60

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCG 121
           RDP AV+  Q+       +F +   TFS++      +G    +DG++ DLGVSS Q+D  
Sbjct: 61  RDPKAVAEAQKI---QDPRFQIEHNTFSEILSICEKRGLVGKIDGILLDLGVSSPQLDDA 117

Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
            RGFSF K GPLDMRM  S GISA++ + Q + +DL  +L   GEE+ A +IA AIV   
Sbjct: 118 ARGFSFMKDGPLDMRMDDSKGISAAEWLQQVSEQDLAWVLKTFGEERFAKKIAKAIVNYN 177

Query: 181 QSAP------FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234
           +SA          T  L+ LI  TV F K+   HPATRSFQA+RIF+N E++EL + L+S
Sbjct: 178 KSAVQNGSEFLTRTLQLAELIAHTVPF-KDKHKHPATRSFQAIRIFINAELDELEKVLQS 236

Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ--SITKKV 292
           A   L   G L V+SFHSLEDR+VK F   +S      + +          Q   +  K 
Sbjct: 237 ALTVLAPAGRLSVISFHSLEDRMVKHFMRKQSQGREIPKGLPLREDQIQRNQTLKVIGKA 296

Query: 293 VVPTQEDVAFNRRSRSAKLRAGMR 316
           ++PT  ++A N R+RSA LR   R
Sbjct: 297 IMPTDAEIAQNPRARSAVLRVAER 320


>gi|284008372|emb|CBA74773.1| S-adenosyl-methyltransferase [Arsenophonus nasoniae]
          Length = 393

 Score =  358 bits (920), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 118/319 (36%), Positives = 182/319 (57%), Gaps = 21/319 (6%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPF 69
           +  +   H+ VLL++ +  LN     + +D TFG GG+S+           +IA+DRDP 
Sbjct: 77  MADSRFKHISVLLDEAVNGLNIKANGIYVDGTFGRGGHSQLILSRLGSKGRLIAIDRDPH 136

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGF 125
           AV+  +E + D   +FS+   +FSQLQ ++  +G    +DGV+ DLGVSS Q+D  +RGF
Sbjct: 137 AVAAAEEMITD--NRFSIKHGSFSQLQTFIAQEGLVGKIDGVLLDLGVSSPQLDDPERGF 194

Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR---Q 181
           SF + GPLDMRM  + G SA+  + +A+  D+  +L   GEE+ A RIA AIV R     
Sbjct: 195 SFMRDGPLDMRMDPTTGQSAAQWLMKADEADIAWVLKTYGEERFAKRIAKAIVARNHHSA 254

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
             P   T+ L+ LI +   F + ++ HPATRSFQA+RI++N+E+EE+A+ L  +   L  
Sbjct: 255 EEPLTRTKQLAELIAQVSPFKEKHK-HPATRSFQAIRIYINSELEEIAKALEGSLNILAP 313

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPT 296
            G L ++SFHSLEDRLVK+F    S        +  ++         + + + K  + PT
Sbjct: 314 QGRLSIISFHSLEDRLVKRFIREHSRGPKVPVGLPLTDVQLKAIGSPILKVLGK--MKPT 371

Query: 297 QEDVAFNRRSRSAKLRAGM 315
           + ++  N R+RS+ +R   
Sbjct: 372 EREIIENPRARSSVVRFAE 390


>gi|260172400|ref|ZP_05758812.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. D2]
          Length = 304

 Score =  358 bits (920), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 105/304 (34%), Positives = 162/304 (53%), Gaps = 16/304 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HVPVLL++ +  +N  P    +D TFG  G+SR        G  ++  D+D  A     E
Sbjct: 9   HVPVLLKESVDGMNIQPDGTYVDVTFGGAGHSREILSRLGEGGRLLGFDQDEDA-----E 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                   F   ++ F  L +++       VD ++ DLGVSS   D  +RGFSF+  G L
Sbjct: 64  RNIVNDTHFIFVRSNFRYLHNFLRYHNIEQVDAILADLGVSSHHFDDSERGFSFRFDGAL 123

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  +G++A+D+VN  + + L  IL + GE K + ++A  IVK R     +T  +  
Sbjct: 124 DMRMNKRAGMTAADIVNTYDEERLANILYLYGELKNSRKLASVIVKARSGQNIRTIGEFL 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +++    F +        + FQALRI VN E+E L + L +A +ALK GG L+V+++HS
Sbjct: 184 EVVKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLLAATEALKPGGRLVVITYHS 241

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK    + + +  A      +   P  F+ +  KV+VP + ++  N RSRSAKLR
Sbjct: 242 LEDRMVKNIMKTGNVEGKAETDFFGNLQTP--FRLVNNKVIVPDEAEIERNPRSRSAKLR 299

Query: 313 AGMR 316
              +
Sbjct: 300 IAEK 303


>gi|170728860|ref|YP_001762886.1| S-adenosyl-methyltransferase MraW [Shewanella woodyi ATCC 51908]
 gi|262826580|sp|B1KKY5|RSMH_SHEWM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|169814207|gb|ACA88791.1| S-adenosyl-methyltransferase MraW [Shewanella woodyi ATCC 51908]
          Length = 313

 Score =  358 bits (920), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 120/307 (39%), Positives = 173/307 (56%), Gaps = 13/307 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H+ VLL + +A LN     + +D TFG GG+SR   K       +IA+DRDP A+   ++
Sbjct: 7   HLSVLLTETVAGLNIKEDGIYIDGTFGRGGHSREVLKHLGENGRLIAIDRDPQAIEAAKQ 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              D   +FS+    F QL  YV + G    +DGV+ D GVSS Q+D  +RGFSF + GP
Sbjct: 67  FADDA--RFSIVHGGFGQLATYVEELGLKGKIDGVLLDFGVSSPQLDDAERGFSFLRDGP 124

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G +A+D + +A V+D+  +    GEEK +  IA  I   R+  PF  T++L
Sbjct: 125 LDMRMDNSQGETAADWLARAEVEDMAWVFKTYGEEKNSRHIARCIAADREKTPFLRTKEL 184

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI + +  SK    HPATR FQA+RI++N+E+E++ Q L  A   L   G L V+SFH
Sbjct: 185 ADLIAR-ISKSKERNKHPATRVFQAIRIYINSELEQIDQALEGALTVLAPQGRLSVISFH 243

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI--TKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK+F    S        +  + A     + +    K + P+ E++  N R+RS+
Sbjct: 244 SLEDRMVKRFIRRHSQGESVPHGLPITEAEINKTRLLKGVGKAIKPSDEEIERNTRARSS 303

Query: 310 KLRAGMR 316
            LR   R
Sbjct: 304 VLRVAQR 310


>gi|298531025|ref|ZP_07018426.1| S-adenosyl-methyltransferase MraW [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509048|gb|EFI32953.1| S-adenosyl-methyltransferase MraW [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 319

 Score =  358 bits (920), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 115/309 (37%), Positives = 178/309 (57%), Gaps = 11/309 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H PV+LEKV+ LL PAPG   LD T G GG+S +  K      +++ +D D  A+    E
Sbjct: 11  HQPVMLEKVLELLAPAPGGRYLDGTLGLGGHSLAILKACKGECSILGMDMDQEALELVAE 70

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + + +    + Q  F   Q+Y+ +    G+DG + DLG+SS+Q+D  ++GFSF   GPL
Sbjct: 71  NLEEQQGGLHMVQDAFHNFQEYLQELQWPGLDGALLDLGMSSLQLDKKEKGFSFIHDGPL 130

Query: 134 DMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           DMRM  +     AS +V  A+   L +I+  LGEE  A RIA AI++ R+ +P  TT +L
Sbjct: 131 DMRMGLAQGFPPASSLVQNASFSRLKQIIYELGEEPMAPRIARAIIQAREKSPINTTLEL 190

Query: 192 SSLIQKTVYFSKNN--RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           + ++++     +    R HPAT++FQALR+  N E+E L   L      L+ G  L+V+S
Sbjct: 191 ARIVEQAYPAQRRRAARNHPATKTFQALRMATNKELESLQDFLEKIAPWLRPGARLVVIS 250

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK++   ++   +      + S +H    + +T+K +  ++ +++ N RSRS
Sbjct: 251 FHSLEDRMVKQYLRRQASDCICPPRSPVCSCSHRKTLEILTRKPLTASEREISRNPRSRS 310

Query: 309 AKLRAGMRT 317
           AKLRA  R 
Sbjct: 311 AKLRAAQRV 319


>gi|71275129|ref|ZP_00651416.1| methyltransferase [Xylella fastidiosa Dixon]
 gi|71900702|ref|ZP_00682825.1| methyltransferase [Xylella fastidiosa Ann-1]
 gi|170731118|ref|YP_001776551.1| S-adenosyl-methyltransferase MraW [Xylella fastidiosa M12]
 gi|71163938|gb|EAO13653.1| methyltransferase [Xylella fastidiosa Dixon]
 gi|71729523|gb|EAO31631.1| methyltransferase [Xylella fastidiosa Ann-1]
 gi|167965911|gb|ACA12921.1| S-adenosyl-methyltransferase [Xylella fastidiosa M12]
          Length = 340

 Score =  358 bits (920), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 115/310 (37%), Positives = 172/310 (55%), Gaps = 10/310 (3%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAV 71
           H    HVPVL  + +  L        LD TFG GG++R   +    G  ++ +D+DP A+
Sbjct: 25  HLSMTHVPVLYTQAMEGLRVVENGTYLDGTFGRGGHARGVLQQLGPGGRLLVMDKDPEAI 84

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +   E +     +  +   +F+ L      + +DGV+FDLGVSS Q+D  +RGFSF K G
Sbjct: 85  AMA-ERVFSCDPRVVIRHGSFALLAQLAAPQSLDGVLFDLGVSSPQLDVPERGFSFAKDG 143

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM    G SA+  + + + +++  +L   GEEKQ+ RIA AIV  R + P   T  
Sbjct: 144 PLDMRMDPEMGESAAQWLARVSEREIAEVLWTYGEEKQSRRIARAIVAYRANQPLLRTVQ 203

Query: 191 LSSLIQKTVYFSK----NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           L+ LI   +  +K     +RIHPATRSFQ +RI VN E+ +L  GL +A  AL+ GG L+
Sbjct: 204 LAELIASVMLRTKSGACKSRIHPATRSFQGIRIHVNRELVDLEVGLEAALAALRPGGRLV 263

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+SFHSLEDR+VK+F +  +      R +        + + I +  +   ++++  N R+
Sbjct: 264 VISFHSLEDRIVKQFISRHAKVPPTNRRLPEVQTFVPLLRMIGR-AIKADEDELEVNPRA 322

Query: 307 RSAKLRAGMR 316
           RSA LR   +
Sbjct: 323 RSAVLRVAEK 332


>gi|315920696|ref|ZP_07916936.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313694571|gb|EFS31406.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 309

 Score =  358 bits (920), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 105/304 (34%), Positives = 162/304 (53%), Gaps = 16/304 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HVPVLL++ +  +N  P    +D TFG  G+SR        G  ++  D+D  A     E
Sbjct: 14  HVPVLLKESVDGMNIQPDGTYVDVTFGGAGHSREILSRLGEGGRLLGFDQDEDA-----E 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                   F   ++ F  L +++       VD ++ DLGVSS   D  +RGFSF+  G L
Sbjct: 69  RNIVNDTHFIFVRSNFRYLHNFLRYHNIEQVDAILADLGVSSHHFDDSERGFSFRFDGAL 128

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  +G++A+D+VN  + + L  IL + GE K + ++A  IVK R     +T  +  
Sbjct: 129 DMRMNKRAGMTAADIVNTYDEERLANILYLYGELKNSRKLASVIVKARSGQNIRTIGEFL 188

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +++    F +        + FQALRI VN E+E L + L +A +ALK GG L+V+++HS
Sbjct: 189 EVVKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLLAATEALKPGGRLVVITYHS 246

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK    + + +  A      +   P  F+ +  KV+VP + ++  N RSRSAKLR
Sbjct: 247 LEDRMVKNIMKTGNVEGKAETDFFGNLQTP--FRLVNNKVIVPDEAEIERNPRSRSAKLR 304

Query: 313 AGMR 316
              +
Sbjct: 305 IAEK 308


>gi|28199742|ref|NP_780056.1| S-adenosyl-methyltransferase MraW [Xylella fastidiosa Temecula1]
 gi|28057863|gb|AAO29705.1| conserved hypothetical protein [Xylella fastidiosa Temecula1]
          Length = 322

 Score =  358 bits (920), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 117/316 (37%), Positives = 172/316 (54%), Gaps = 10/316 (3%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65
           M     H    HVPVL  + +  L        LD TFG GG++R   +    G  ++ +D
Sbjct: 1   MDGLAPHLSMTHVPVLYTQAMEGLRVVENGTYLDGTFGRGGHARGVLQQLGPGGRLLVMD 60

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125
           +DP A++   E       +  +   +F+ L      + +DGV+FDLGVSS Q+D  +RGF
Sbjct: 61  KDPEAIAMA-ERAFSCDPRVVIRHGSFALLAQLAAPQSLDGVLFDLGVSSPQLDVPERGF 119

Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF K GPLDMRM    G SA+  + + + +++  +L   GEEKQ+ RIA AIV  R + P
Sbjct: 120 SFAKDGPLDMRMDPEMGESAAQWLARVSEREIADVLWTYGEEKQSRRIARAIVAYRANQP 179

Query: 185 FQTTQDLSSLIQKTVYFSK----NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
              T  L+ LI   +  +K     +RIHPATRSFQ +RI VN E+ +L  GL +A  AL+
Sbjct: 180 LLRTVQLAELIASVMLRTKFGACKSRIHPATRSFQGIRIHVNRELVDLEVGLEAALAALR 239

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300
            GG L+V+SFHSLEDR+VK+F +  S      R +        + + I +  +   ++++
Sbjct: 240 PGGRLVVISFHSLEDRIVKQFISRHSKVPPTNRRLPEVQTFVPLLRMIGR-AIKADEDEL 298

Query: 301 AFNRRSRSAKLRAGMR 316
             N R+RSA LR   +
Sbjct: 299 EVNPRARSAVLRVAEK 314


>gi|296313573|ref|ZP_06863514.1| S-adenosyl-methyltransferase MraW [Neisseria polysaccharea ATCC
           43768]
 gi|296839874|gb|EFH23812.1| S-adenosyl-methyltransferase MraW [Neisseria polysaccharea ATCC
           43768]
          Length = 319

 Score =  358 bits (920), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 115/312 (36%), Positives = 170/312 (54%), Gaps = 10/312 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H+ VLL + +  L      + +D TFG GG+SR           +I  D+DP A++  +E
Sbjct: 9   HITVLLNEAVDALAVREDGIYVDGTFGRGGHSRLILSRLGDAGRLIVFDKDPQAIAVAEE 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +    ++  +    F   Q  + D G   VDG +FDLG+SS QID G RGFSF+   PL
Sbjct: 69  -LARSDKRVGVVHGGFVSFQTALDDLGIGKVDGALFDLGISSPQIDDGSRGFSFRFDAPL 127

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  + G+SA++ +  A+ +DL  ++   GEE+ + +IA AIV +R  +P  TT+ L+
Sbjct: 128 DMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRAESPIDTTRKLA 187

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            ++ + V   +  +  PATR+FQA+RIF+N E+EE+   L      LK GG L V++FHS
Sbjct: 188 QIVAQNVRTRERGQ-DPATRTFQAVRIFINRELEEVGAVLPQVMCRLKQGGRLAVIAFHS 246

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK+F    S      R      A  P     I  + + P + ++A N R+RSA L
Sbjct: 247 LEDRIVKQFVKKYSQHAPLPRWAAVREADLPEPPLKIVGRALKPGEAEIAANPRARSAVL 306

Query: 312 RAGMRTVERSIE 323
           R   RT     E
Sbjct: 307 RVAERTAGPIPE 318


>gi|254673389|emb|CBA08689.1| S-adenosyl-methyltransferase [Neisseria meningitidis alpha275]
 gi|319411060|emb|CBY91460.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis WUE 2594]
          Length = 328

 Score =  358 bits (920), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 117/318 (36%), Positives = 174/318 (54%), Gaps = 13/318 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           MS A  +    H+ VLL++ +  L      V +D TFG GG+SR           +I  D
Sbjct: 1   MSGAESY---RHITVLLDEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFD 57

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGD 122
           +DP A++  +E +    ++  +    F+  Q  +   G   VDG +FDLG+SS QID G 
Sbjct: 58  KDPQAIAVAEE-LARSDKRVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGS 116

Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF+   PLDMRM  + G+SA++ +  A+ +DL  ++   GEE+ + +IA AIV +R 
Sbjct: 117 RGFSFRFDAPLDMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRA 176

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            +P  TT+ L+ ++ + V   +  +  PATR+FQA+RIF+N E+EE+   L      LK 
Sbjct: 177 ESPIDTTRKLAQIVAQNVRTRERGQ-DPATRTFQAVRIFINRELEEVGAVLPQVMCRLKE 235

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDV 300
           GG L V++FHSLEDR+VK+F    S      R      A  P     I  + + P + ++
Sbjct: 236 GGRLAVIAFHSLEDRIVKQFVKKYSQHAPLPRWAAVREADLPEPPLKIVGRALKPGEAEI 295

Query: 301 AFNRRSRSAKLRAGMRTV 318
           A N R+RSA LR   RT 
Sbjct: 296 AANPRARSAVLRVAERTA 313


>gi|182682489|ref|YP_001830649.1| S-adenosyl-methyltransferase MraW [Xylella fastidiosa M23]
 gi|182632599|gb|ACB93375.1| S-adenosyl-methyltransferase MraW [Xylella fastidiosa M23]
 gi|307578769|gb|ADN62738.1| S-adenosyl-methyltransferase MraW [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 328

 Score =  358 bits (920), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 116/310 (37%), Positives = 171/310 (55%), Gaps = 10/310 (3%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAV 71
           H    HVPVL  + +  L        LD TFG GG++R   +    G  ++ +D+DP A+
Sbjct: 13  HLSMTHVPVLYTQAMEGLRVVENGTYLDGTFGRGGHARGVLQQLGPGGRLLVMDKDPEAI 72

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +   E       +  +   +F+ L      + +DGV+FDLGVSS Q+D  +RGFSF K G
Sbjct: 73  AMA-ERAFSCDPRVVIRHGSFALLAQLAAPQSLDGVLFDLGVSSPQLDVPERGFSFAKDG 131

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM    G SA+  + + + +++  +L   GEEKQ+ RIA AIV  R + P   T  
Sbjct: 132 PLDMRMDPEMGESAAQWLARVSEREIADVLWTYGEEKQSRRIARAIVAYRANQPLLRTVQ 191

Query: 191 LSSLIQKTVYFSK----NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           L+ LI   +  +K     +RIHPATRSFQ +RI VN E+ +L  GL +A  AL+ GG L+
Sbjct: 192 LAELIASVMLRTKFGACKSRIHPATRSFQGIRIHVNRELVDLEVGLEAALAALRPGGRLV 251

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+SFHSLEDR+VK+F +  S      R +        + + I +  +   ++++  N R+
Sbjct: 252 VISFHSLEDRIVKQFISRHSKVPPTNRRLPEVQTFVPLLRMIGR-AIKADEDELEVNPRA 310

Query: 307 RSAKLRAGMR 316
           RSA LR   +
Sbjct: 311 RSAVLRVAEK 320


>gi|157828717|ref|YP_001494959.1| S-adenosyl-methyltransferase MraW [Rickettsia rickettsii str.
           'Sheila Smith']
 gi|157801198|gb|ABV76451.1| S-adenosyl-methyltransferase MraW [Rickettsia rickettsii str.
           'Sheila Smith']
          Length = 299

 Score =  358 bits (920), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 125/300 (41%), Positives = 181/300 (60%), Gaps = 5/300 (1%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETMRDYK 82
           +L +++  L+P  G+  LD TFGAGGYS++  +     V ALDRDP  +   +E  ++Y 
Sbjct: 1   MLNEMLEALSPKAGESYLDCTFGAGGYSKAILESCNCYVTALDRDPNVIKRAEEIQQNYG 60

Query: 83  EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI 142
           E+F   +  F+     + +K  DG+V DLGVSSMQ+D  DRGFSF   GPLDMRMS  G+
Sbjct: 61  ERFDFVETNFADSFAKLKEKKFDGIVLDLGVSSMQLDIADRGFSFLHDGPLDMRMSGQGL 120

Query: 143 SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS 202
           SA + VN A  K+L  ++   G+E  + RIA  IV+ R++A   +T  L+ +++ ++ F 
Sbjct: 121 SAEEFVNAAEEKELADVIYKYGDESFSRRIAKRIVEYRKTARIDSTGKLAEIVRSSIGFR 180

Query: 203 KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF 262
           K  +I PAT++FQA+RI+VN+E+ EL Q L + +  LK  G L+VVSFHSLEDR+VK FF
Sbjct: 181 K-GKIDPATKTFQAIRIYVNDELGELEQFLVNVKNILKKDGRLVVVSFHSLEDRIVKNFF 239

Query: 263 ASRSGKVMAVRHMIPSNA---HPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319
              S K +        +         + IT K + P+ ++V  N R+RSAKLRA     E
Sbjct: 240 KENSEKPVVRSKYAKDDMTIDPNKWLKIITNKALAPSDKEVGLNIRARSAKLRAAKAIYE 299


>gi|260642625|ref|ZP_05416656.2| S-adenosyl-methyltransferase MraW [Bacteroides finegoldii DSM
           17565]
 gi|260621294|gb|EEX44165.1| S-adenosyl-methyltransferase MraW [Bacteroides finegoldii DSM
           17565]
          Length = 309

 Score =  358 bits (920), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 105/304 (34%), Positives = 160/304 (52%), Gaps = 16/304 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HVPVLL++ +  +N  P    +D TFG  G+SR        G  ++  D+D  A     E
Sbjct: 14  HVPVLLKESVDGMNIRPDGTYVDVTFGGAGHSREILSRLGEGGRLLGFDQDEDA-----E 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                   F   ++ F  L +++       VD ++ DLGVSS   D  +RGFSF+  G L
Sbjct: 69  RNIVDDPHFIFVRSNFRYLHNFLRYHDIEQVDAILADLGVSSHHFDDSERGFSFRFDGDL 128

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  +G++A+D+VN    + L  I  + GE K + ++A  IVK R     +T  +  
Sbjct: 129 DMRMNKRAGLTAADIVNTYEEERLANIFYLYGELKNSRKLASVIVKARNGQAIRTIGEFL 188

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I+    F +        + FQALRI VN E+E L + L +A +ALK GG L+V+++HS
Sbjct: 189 EVIKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLLAATEALKPGGRLVVITYHS 246

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK    + + +  A      +   P  F+ +  KV+VP + ++  N RSRSAKLR
Sbjct: 247 LEDRMVKNIMKTGNVEGKAESDFFGNLNTP--FRLVNNKVIVPDETEIERNPRSRSAKLR 304

Query: 313 AGMR 316
              +
Sbjct: 305 IAEK 308


>gi|293370481|ref|ZP_06617034.1| S-adenosyl-methyltransferase MraW [Bacteroides ovatus SD CMC 3f]
 gi|299147137|ref|ZP_07040204.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 3_1_23]
 gi|292634473|gb|EFF53009.1| S-adenosyl-methyltransferase MraW [Bacteroides ovatus SD CMC 3f]
 gi|298515022|gb|EFI38904.1| S-adenosyl-methyltransferase MraW [Bacteroides sp. 3_1_23]
          Length = 304

 Score =  358 bits (920), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 106/304 (34%), Positives = 162/304 (53%), Gaps = 16/304 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HVPVLL++ +  +N  P    +D TFG  G+SR        G  ++  D+D  A     E
Sbjct: 9   HVPVLLKESVDGMNIQPDGTYVDVTFGGAGHSREILSRLGEGGRLLGFDQDEDA-----E 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                   F   ++ F  L +++       VD ++ DLGVSS   D  +RGFSF+  G L
Sbjct: 64  RNIVNDTHFIFVRSNFRYLHNFLRYHDIEQVDAILADLGVSSHHFDDSERGFSFRFDGAL 123

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  +G++A+D+VN  + + L  IL + GE K + ++A  IVK R     +T  +  
Sbjct: 124 DMRMNKRAGMTAADIVNTYDEERLANILYLYGELKNSRKLASVIVKARSGQNIRTIGEFL 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I+    F +        + FQALRI VN E+E L + L +A +ALK GG L+V+++HS
Sbjct: 184 EIIKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLLAATEALKPGGRLVVITYHS 241

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK    + + +  A      +   P  F+ +  KV+VP + ++  N RSRSAKLR
Sbjct: 242 LEDRMVKNIMKTGNVEGKAETDFFGNLQTP--FRLVNNKVIVPDEAEIERNPRSRSAKLR 299

Query: 313 AGMR 316
              +
Sbjct: 300 IAEK 303


>gi|154494023|ref|ZP_02033343.1| hypothetical protein PARMER_03368 [Parabacteroides merdae ATCC
           43184]
 gi|154086283|gb|EDN85328.1| hypothetical protein PARMER_03368 [Parabacteroides merdae ATCC
           43184]
          Length = 308

 Score =  358 bits (920), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 107/304 (35%), Positives = 162/304 (53%), Gaps = 17/304 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           HVPV+L + +  L+  P  V +D TFG GG+SR           +   D+D  A     E
Sbjct: 9   HVPVMLHESLEGLDIQPSGVYVDVTFGGGGHSREILNRLNDEGELYGFDQDADA-----E 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  +F   ++ F  L +++   GV    DG++ DLGVSS   D  DRGFSF+  G 
Sbjct: 64  KNIPADSRFVFVRSNFRYLYNFMRYHGVAGEVDGLLADLGVSSHHFDDKDRGFSFRFDGA 123

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+  +G +A+D+VN    + L  +  + GE K A ++A  +V+ R+    +T  D 
Sbjct: 124 LDMRMNTRAGQTAADIVNTYTEEQLADLFYLYGELKVARKLASVLVRSREIKKIETIADF 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             +I+      K+       + FQALRI VN+E+  L + L+   + LK GG L+V+++H
Sbjct: 184 LEVIKPFT--GKDKEKKFLAQVFQALRIEVNDEMRALREMLQQTLQVLKPGGRLVVITYH 241

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDRLVK F  + + +  A +    +   P  F+ +  KV+VP+ E++  N RSRSAKL
Sbjct: 242 SLEDRLVKNFLKTGNFEGKAEQDFFGNIRSP--FRLVNNKVIVPSDEEIERNPRSRSAKL 299

Query: 312 RAGM 315
           R   
Sbjct: 300 RIAE 303


>gi|156935398|ref|YP_001439314.1| S-adenosyl-methyltransferase MraW [Cronobacter sakazakii ATCC
           BAA-894]
 gi|263447014|sp|A7MIE1|RSMH_ENTS8 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|156533652|gb|ABU78478.1| hypothetical protein ESA_03256 [Cronobacter sakazakii ATCC BAA-894]
          Length = 313

 Score =  358 bits (920), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 121/312 (38%), Positives = 179/312 (57%), Gaps = 19/312 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++   
Sbjct: 6   KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEQGRLLAIDRDPQAIAAAA 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +FS+    FS L DYV ++     +DG++ DLGVSS Q+D  +RGFSF + G
Sbjct: 66  ---AIDDPRFSIIHGPFSALGDYVRERELQGKIDGILLDLGVSSPQLDDPERGFSFMRDG 122

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   T++
Sbjct: 123 PLDMRMDPTRGQSAAEWLRNAEEADIAWVLKTFGEERFAKRIARAIVERNRELPMTRTKE 182

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+ A + L  GG L V+SF
Sbjct: 183 LAEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKGAVEVLAPGGRLSVISF 241

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNRR 305
           HSLEDRLVK+F   +S        +  + A          +++ K  ++P + +VA N R
Sbjct: 242 HSLEDRLVKRFMREQSRGPQVPAGLPMTEAQLQKLGGRELRALGK--LMPGEAEVAENPR 299

Query: 306 SRSAKLRAGMRT 317
           +RS+ LR   RT
Sbjct: 300 ARSSVLRVAERT 311


>gi|325142966|gb|EGC65323.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis 961-5945]
          Length = 328

 Score =  358 bits (920), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 117/318 (36%), Positives = 174/318 (54%), Gaps = 13/318 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           MS A  +    H+ VLL + +  L      V +D TFG GG+SR           +I  D
Sbjct: 1   MSGAESY---RHITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFD 57

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGD 122
           +DP A++  +E +    ++  +    F+  Q  +   G   VDG +FDLG+SS QID G 
Sbjct: 58  KDPQAIAVAEE-LARSDKRVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGS 116

Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF+   PLDMRM  + G+SA++ +  A+ +DL  ++   GEE+ + +IA AIV +R 
Sbjct: 117 RGFSFRFDAPLDMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRA 176

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            +P  TT+ L+ ++ + V   +  +  PATR+FQA+RIF+N E+EE+   L      LK 
Sbjct: 177 ESPIDTTRKLAQIVAQNVRTRERGQ-DPATRTFQAVRIFINRELEEVGAVLPQVMCRLKE 235

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDV 300
           GG L V++FHSLEDR+VK+F    S      R      A  P +   I  + + P + ++
Sbjct: 236 GGRLAVIAFHSLEDRIVKQFVKKYSQHAPLPRWAAVREADLPELPLKIVGRALKPGEAEI 295

Query: 301 AFNRRSRSAKLRAGMRTV 318
           A N R+RSA LR   RT 
Sbjct: 296 AANPRARSAVLRVAERTA 313


>gi|118587349|ref|ZP_01544775.1| cell division protein MraW [Oenococcus oeni ATCC BAA-1163]
 gi|118432173|gb|EAV38913.1| cell division protein MraW [Oenococcus oeni ATCC BAA-1163]
          Length = 314

 Score =  358 bits (919), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 107/308 (34%), Positives = 165/308 (53%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77
           HV V L + +  L      + +DAT G GG++    K     +V + D+D  A+   ++ 
Sbjct: 7   HVTVFLRQAVENLAVKTNGIYVDATLGGGGHTDLLLKKALHGHVYSFDQDENAIDFNKKR 66

Query: 78  MRDY--KEQFSLFQATFSQL---QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                 + + SL  + F  L    + +    +DG+VFDLGVSS Q D   RGFS++    
Sbjct: 67  FSKEISEGRLSLIHSNFQNLIKELNLLKVFAIDGIVFDLGVSSPQFDDEKRGFSYRSDAR 126

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S  + A  +VN    KDL  I+   GEEK AS IA  I+KRR+  P  TT++L
Sbjct: 127 LDMRMDQSQSLDAYQIVNTWEYKDLASIINRYGEEKFASSIARKIIKRREVQPIITTEEL 186

Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
              I++ +     + + HPA ++FQA+RI VN+E+  L + L+ A + L  GG + V++F
Sbjct: 187 VETIKEALPDKILHKKGHPAKKTFQAIRIAVNDELNVLQEALKQASQLLNRGGRISVITF 246

Query: 251 HSLEDRLVKKFFASRSGK-VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
            SLEDR+VK FF   + K  +  +  +P       F+ +TK  ++P+ E++  N R+ SA
Sbjct: 247 QSLEDRIVKHFFNQLATKNQLPSKLPVPDKFIQEEFKLLTKHPIIPSVEEIEENHRAHSA 306

Query: 310 KLRAGMRT 317
           K R   + 
Sbjct: 307 KFRVLEKN 314


>gi|73667110|ref|YP_303126.1| S-adenosyl-methyltransferase MraW [Ehrlichia canis str. Jake]
 gi|88909200|sp|Q3YRX7|RSMH_EHRCJ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|72394251|gb|AAZ68528.1| methyl transferase [Ehrlichia canis str. Jake]
          Length = 297

 Score =  358 bits (919), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 132/304 (43%), Positives = 192/304 (63%), Gaps = 12/304 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQET 77
            H PVLL++++ +L+P  GK+ +DATFGAGGY+++        V A+D+D       +E 
Sbjct: 1   MHTPVLLKEMLEILDPQDGKIYVDATFGAGGYTKAILNAANCKVCAIDQDKHTSIFYEEL 60

Query: 78  MRDYKEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
             ++  +   F   FSQ++  +     + VDGVVFD+GVSSMQ+D  +RGFSF K+GPLD
Sbjct: 61  ANNFPNRIHFFINKFSQIKQVLLGAQLERVDGVVFDIGVSSMQLDDANRGFSFSKNGPLD 120

Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRMS S  I AS  VN  + +++  I+   G EK + +IA AI+  R+    +TT +L+S
Sbjct: 121 MRMSTSNSIDASVFVNTVSEEEIANIIYQYGGEKYSRKIAKAIINFRKKKVIETTGELAS 180

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           +++  V  SKN+ I+PATR+FQA+RI+VN E++EL QG+  A   L  GG +IVVSFHSL
Sbjct: 181 IVRSVVSRSKNHDINPATRTFQAIRIWVNKELQELEQGIMCAADLLNPGGKIIVVSFHSL 240

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           EDR+VK  F S     ++++           FQ I KK+V P+ E++  N RSRSAKLRA
Sbjct: 241 EDRIVKMIFKSLCSDEISLKLNTG-------FQLINKKIVRPSFEEILNNPRSRSAKLRA 293

Query: 314 GMRT 317
            ++ 
Sbjct: 294 ILKI 297


>gi|313896117|ref|ZP_07829671.1| S-adenosyl-methyltransferase MraW [Selenomonas sp. oral taxon 137
           str. F0430]
 gi|312975542|gb|EFR41003.1| S-adenosyl-methyltransferase MraW [Selenomonas sp. oral taxon 137
           str. F0430]
          Length = 310

 Score =  358 bits (919), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 109/307 (35%), Positives = 154/307 (50%), Gaps = 10/307 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQ 75
            HV VL  + +A L   P    +D T G  G++            +I +D+D  A++  Q
Sbjct: 4   HHVSVLPAETVAALAVVPEGTYVDCTLGGAGHAGRIAAQLSPAGRLIGIDQDETAIAAAQ 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +     + SL    F  L   +  +GV   DG++FDLGVSS QID   RGFS+ +  P
Sbjct: 64  VRLASAACRVSLVHDNFRNLTAILTAEGVSAVDGILFDLGVSSPQIDTAARGFSYMQDAP 123

Query: 133 LDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM    + SA  VVN+ +   LT I    GEE+ A RIA  I   R+  P +TT +L
Sbjct: 124 LDMRMDRRAVRSAHTVVNEYSAARLTEIFYTYGEERWAKRIAAFIEAARKERPIETTGEL 183

Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I + V    +    HPA R FQA+RI VN E+  L+  + +A  ALK GG L V++F
Sbjct: 184 VEIIDRAVPKKVRAKGGHPAKRVFQAIRIEVNEELTILSDAVTAAVHALKPGGRLAVITF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK+     +   +   H       H    + I  K    +  + A N R++SA
Sbjct: 244 HSLEDRIVKRTMQQLARGCICPPHTPACICGHTPELRLI-GKAQTASLAECAVNARAKSA 302

Query: 310 KLRAGMR 316
           KLR   +
Sbjct: 303 KLRVAEK 309


>gi|167630120|ref|YP_001680619.1| s-adenosyl-methyltransferase mraw [Heliobacterium modesticaldum
           Ice1]
 gi|263456105|sp|B0TGB2|RSMH_HELMI RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|167592860|gb|ABZ84608.1| s-adenosyl-methyltransferase mraw [Heliobacterium modesticaldum
           Ice1]
          Length = 313

 Score =  358 bits (919), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 119/312 (38%), Positives = 185/312 (59%), Gaps = 10/312 (3%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H+PVLL +V+ +L P P  V LD T G GG+S +  +       VI LD+DP A++ 
Sbjct: 2   VFHHIPVLLHQVLEVLKPRPEGVYLDGTVGGGGHSAAILQKLSGRGRVIGLDQDPAALAA 61

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQK 129
               +  + ++ +L ++ F  +   V + G    +DG++ D+GVSS Q+D  +RGF+++ 
Sbjct: 62  AGRKLASFGDRVTLVRSNFRHIGAVVAELGLTGKIDGILLDIGVSSHQLDEAERGFTYRM 121

Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM+  S ++AS ++N+A   ++ RIL   GEE+ A RIA  IVKRR   P + T
Sbjct: 122 DAPLDMRMNPESALTASKLLNEAPEGEIARILRDYGEERWAKRIAQFIVKRRALQPLERT 181

Query: 189 QDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L  +I+  +  +      HPA R+FQALRI VN+E+  L + L +A +AL  GG L V
Sbjct: 182 GELVDIIRAAIPAAARQEGGHPAKRTFQALRIAVNDELGALEEALPAALEALAPGGRLAV 241

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           +SFHSLEDR+VK FFA ++   +      + +  +    + ITKK +V + E++  N R+
Sbjct: 242 ISFHSLEDRIVKSFFAEQARGCLCPPDFPVCACGNRPKVKIITKKPLVGSDEEMRANPRA 301

Query: 307 RSAKLRAGMRTV 318
           +SAKLRA  +  
Sbjct: 302 QSAKLRAAEKIR 313


>gi|294677904|ref|YP_003578519.1| S-adenosyl-methyltransferase MraW [Rhodobacter capsulatus SB 1003]
 gi|294476724|gb|ADE86112.1| S-adenosyl-methyltransferase MraW [Rhodobacter capsulatus SB 1003]
          Length = 338

 Score =  358 bits (919), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 150/336 (44%), Positives = 203/336 (60%), Gaps = 8/336 (2%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAV 71
           +      H+PVLL  ++  + P      LD TFGAGGY+R     G   VI +DRDP A 
Sbjct: 1   MDRPDTPHIPVLLRPLLQAVAPV-LGTWLDGTFGAGGYARGLLAAGAGRVIGIDRDPLAF 59

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQ 128
                   ++ E+  L + TFS L     +    G++GVV DLGVSSMQ+D  +RGFSF 
Sbjct: 60  EMAAPWRGEFGERLVLVENTFSNLDAVAAEIAPEGLNGVVLDLGVSSMQLDQAERGFSFL 119

Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           + GPLDMRMS SG SA+D+VN A    L  IL   GEE+ + RIA AIV+ R+SAP+++T
Sbjct: 120 RDGPLDMRMSQSGPSAADLVNTAEEGALADILYHYGEERASRRIARAIVEARKSAPYEST 179

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           + L + I++ +   K  + HPATRSFQALRI VN+E  +L  GL +AE+ALK GG L VV
Sbjct: 180 KQLVATIERCLPRPKPGQSHPATRSFQALRIAVNDEFGQLIAGLEAAERALKPGGKLAVV 239

Query: 249 SFHSLEDRLVKKFFASRSGKVM-AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+VK+FF +R+G+     R+   +    A F  +T+K V P + ++A N R+R
Sbjct: 240 TFHSLEDRVVKRFFQARAGRAPGGSRYAPEAAPEAAAFDLVTRKGVGPDEIELAQNPRAR 299

Query: 308 SAKLRAGMRTVERS-IEDDSFVHLP-RLPTLSQFRG 341
           SA LR G RT   +   D S + LP  L    + RG
Sbjct: 300 SAILRIGARTDSPAGRADRSSLGLPAPLFETDRSRG 335


>gi|66047337|ref|YP_237178.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv.
           syringae B728a]
 gi|75500766|sp|Q4ZNY2|RSMH_PSEU2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|63258044|gb|AAY39140.1| methyltransferase [Pseudomonas syringae pv. syringae B728a]
          Length = 313

 Score =  358 bits (919), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 115/307 (37%), Positives = 174/307 (56%), Gaps = 12/307 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H+ VLLE+ +  L        LD TFG GG+SR           ++  D+DP A++ GQ 
Sbjct: 7   HITVLLEEAVEALAVRADGCYLDGTFGRGGHSRLILSQLGPDGRLLGFDKDPQAIATGQA 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            +     +F + Q +F++L     ++G    V G++ DLGVSS Q+D  +RGFSF   GP
Sbjct: 67  -LAAEDGRFVIVQRSFAELGSETQERGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDGP 125

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + GISA++ +  A  +++ R+    GEE+ A R+A+A+V RR+  PF+ T DL
Sbjct: 126 LDMRMDPARGISAAEFIATAPAEEIARVFKEYGEERFAKRMANAVVARREVQPFERTADL 185

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + +++      +  + +PATR+FQ LRI VNNE+ +L  GL +A  AL+ GG L+V+SFH
Sbjct: 186 AEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLVVISFH 244

Query: 252 SLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK F    + G+   +   +P    P   +  I  K    +  +   N RSRSA
Sbjct: 245 SLEDRIVKLFMRKLAKGEADNMPRNLPIQFKPFEPKIKIHGKAQFASDAETKANPRSRSA 304

Query: 310 KLRAGMR 316
            +R   +
Sbjct: 305 VMRVAEK 311


>gi|212712749|ref|ZP_03320877.1| hypothetical protein PROVALCAL_03846 [Providencia alcalifaciens DSM
           30120]
 gi|212684665|gb|EEB44193.1| hypothetical protein PROVALCAL_03846 [Providencia alcalifaciens DSM
           30120]
          Length = 317

 Score =  358 bits (919), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 125/323 (38%), Positives = 177/323 (54%), Gaps = 22/323 (6%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPF 69
           +      HV VLL++ +  LN  P  + +D TFG GG+SR           +IA+DRDP 
Sbjct: 1   MTQQQFKHVTVLLDEAVNGLNIKPNGIYIDGTFGRGGHSRLILSQLGEQGRLIAIDRDPE 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGF 125
           A+   QE       +F +    FS + DYV ++G    +DGV+ DLGVSS Q+D  +RGF
Sbjct: 61  AIKAAQEI---NDPRFMIKHGPFSAIADYVEEEGLVGKIDGVLLDLGVSSPQLDDPERGF 117

Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR---Q 181
           SF + GPLDMRM  + G SA   +  A   D+  +L   GEE+ + RIA AIV+R    +
Sbjct: 118 SFMRDGPLDMRMDPTRGQSAQQWLMTAEADDIAWVLKTFGEERFSKRIARAIVERNHNPE 177

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
             P   T+ L+ LI K     K+   HPATRSFQA+RI++N+E+EE+ + L  A   L  
Sbjct: 178 EEPLTRTRHLAELIAKVSPI-KDRHKHPATRSFQAIRIYINSELEEIEKALNGAMSVLAP 236

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPT 296
            G L V+SFHSLEDRLVK+F    S        +  + A       A  +++ K  + P+
Sbjct: 237 EGRLSVISFHSLEDRLVKRFIRQNSTGPSVPAGIPLTEAQIKELGAAKLRALGK--MKPS 294

Query: 297 QEDVAFNRRSRSAKLRAGMRTVE 319
           + ++  N R+RS+ LR   R VE
Sbjct: 295 ELEIDENPRARSSVLRFAERAVE 317


>gi|330973397|gb|EGH73463.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 313

 Score =  358 bits (919), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 114/307 (37%), Positives = 174/307 (56%), Gaps = 12/307 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H+ VLLE+ +  L        LD TFG GG+SR           ++  D+DP A++ GQ 
Sbjct: 7   HITVLLEEAVEALAVRADGCYLDGTFGRGGHSRLILSQLGPDGRLLGFDKDPQAIATGQA 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            +     +F + Q +F++L     ++G    V G++ DLGVSS Q+D  +RGFSF   GP
Sbjct: 67  -LAAEDGRFVIVQRSFAELGSETQERGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDGP 125

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G+SA++ +  A  +++ R+    GEE+ A R+A+A+V RR+  PF+ T DL
Sbjct: 126 LDMRMDPARGVSAAEFIATAPAEEIARVFKEYGEERFAKRMANAVVARREVQPFERTADL 185

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + +++      +  + +PATR+FQ LRI VNNE+ +L  GL +A  AL+ GG L+V+SFH
Sbjct: 186 AEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLVVISFH 244

Query: 252 SLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK F    + G+   +   +P    P   +  I  K    +  +   N RSRSA
Sbjct: 245 SLEDRIVKLFMRKLAKGEADNMPRNLPIQFKPFEPKIKIHGKAQFASDAETKANPRSRSA 304

Query: 310 KLRAGMR 316
            +R   +
Sbjct: 305 VMRVAEK 311


>gi|292489365|ref|YP_003532252.1| S-adenosyl methionine adenyltransferase [Erwinia amylovora
           CFBP1430]
 gi|292898411|ref|YP_003537780.1| S-adenosyl-methyltransferase [Erwinia amylovora ATCC 49946]
 gi|291198259|emb|CBJ45365.1| S-adenosyl-methyltransferase [Erwinia amylovora ATCC 49946]
 gi|291554799|emb|CBA22629.1| S-adenosyl methionine adenyltransferase [Erwinia amylovora
           CFBP1430]
 gi|312173530|emb|CBX81784.1| S-adenosyl methionine adenyltransferase [Erwinia amylovora ATCC
           BAA-2158]
          Length = 312

 Score =  358 bits (919), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 122/317 (38%), Positives = 181/317 (57%), Gaps = 19/317 (5%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAV 71
                H  VLL++ +  LN  P  + +D TFG GG+SR           + A+DRDP A+
Sbjct: 2   QDTYKHTTVLLDEAVNALNIKPDGIYIDGTFGRGGHSRLILSQLGEHGRLYAIDRDPQAI 61

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSF 127
           +   +       +F++    FS L +Y   +G    +DG++ DLGVSS Q+D  +RGFSF
Sbjct: 62  AAAADI---TDPRFTIIHGPFSALAEYAEQRGLTGKIDGILLDLGVSSPQLDDAERGFSF 118

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
            + GPLDMRM  + G SA++ + +A   D+T +L   GEE+ A RIA AIV+R +  P  
Sbjct: 119 MRDGPLDMRMDPTRGQSAAEWLLKAEESDITFVLKTFGEERFARRIARAIVERNRQQPMT 178

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
            T++L+ +I       K+   HPATRSFQA+RI+VN+E+EE+ Q L+ A  AL AGG L 
Sbjct: 179 RTKELADVIYAATPV-KDKFKHPATRSFQAIRIWVNSELEEIEQALKGALSALAAGGRLS 237

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVA 301
           ++SFHSLEDR+VK+F   +S        +  + A          +++ K  ++P + +VA
Sbjct: 238 IISFHSLEDRIVKRFMREQSRGPQVPHGLPMTEAQLSSLGGRQLKALGK--MMPGESEVA 295

Query: 302 FNRRSRSAKLRAGMRTV 318
            N R+RS+ LR   RT 
Sbjct: 296 DNPRARSSVLRIAERTA 312


>gi|70732392|ref|YP_262148.1| S-adenosyl-methyltransferase MraW [Pseudomonas fluorescens Pf-5]
 gi|88909211|sp|Q4K6I5|RSMH_PSEF5 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|68346691|gb|AAY94297.1| S-adenosyl-methyltransferase MraW [Pseudomonas fluorescens Pf-5]
          Length = 315

 Score =  358 bits (919), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 115/308 (37%), Positives = 179/308 (58%), Gaps = 12/308 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
           +H+ VLL++ +  L   P    LD TFG GG+SR           ++  D+DP A++ GQ
Sbjct: 8   NHITVLLDEAVEALAVRPDGCYLDGTFGRGGHSRLILSKLGPQGRLLGFDKDPQAIATGQ 67

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
             +     +F + Q +F++L   V ++G    V GV+ DLGVSS Q+D  +RGFSF   G
Sbjct: 68  A-LAAEDGRFVVVQRSFAELGSEVAERGLAGKVSGVLLDLGVSSPQLDDPERGFSFLNDG 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + GISA+  +  A V+++ R+    GEE+ + R+A A+V+RR+  PF+ T D
Sbjct: 127 PLDMRMDPTRGISAAQFIATAPVEEIARVFKEYGEERFSGRMARAVVERREIQPFERTAD 186

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ +++      +  + +PATR+FQ LRI VNNE+ +L  GL +A ++L+ GG L+V+SF
Sbjct: 187 LAEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAALESLEVGGRLVVISF 245

Query: 251 HSLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+VK F      G+   +   +P      V +  I  K    ++ ++  N R+RS
Sbjct: 246 HSLEDRIVKLFMRRLVKGESDNLPRNLPVRFEAFVPKIKIHGKAQFASEAELKANPRARS 305

Query: 309 AKLRAGMR 316
           A +R   +
Sbjct: 306 AVMRVAEK 313


>gi|295086283|emb|CBK67806.1| S-adenosyl-methyltransferase MraW [Bacteroides xylanisolvens XB1A]
          Length = 304

 Score =  358 bits (919), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 106/304 (34%), Positives = 161/304 (52%), Gaps = 16/304 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HVPVLL++ +  +N  P    +D TFG  G+SR        G  ++  D+D  A     E
Sbjct: 9   HVPVLLKESVDGMNIQPDGTYVDVTFGGAGHSREILSRLGEGGRLLGFDQDEDA-----E 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                   F   ++ F  LQ+++       VD ++ DLGVSS   D  +RGFSF+  G L
Sbjct: 64  RNIVNDPHFIFVRSNFRYLQNFLRYHDIEQVDAILADLGVSSHHFDDSERGFSFRFDGAL 123

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  +GI+A+D+VN    + L  +  + GE K + ++A  IVK R     +T  +  
Sbjct: 124 DMRMNKRAGITAADIVNTYEEERLANLFYLYGELKNSRKLASVIVKTRSGQNIRTIGEFL 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I+    F +        + FQALRI VN E+E L + L +A +ALK GG L+V+++HS
Sbjct: 184 EIIKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLLAATEALKPGGRLVVITYHS 241

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK    + + +  A      +   P  F+ +  KV+VP + ++  N RSRSAKLR
Sbjct: 242 LEDRMVKNIMKTGNVEGKAESDFFGNLQTP--FRLVNNKVIVPDEAEIERNPRSRSAKLR 299

Query: 313 AGMR 316
              +
Sbjct: 300 IAEK 303


>gi|330888582|gb|EGH21243.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 313

 Score =  358 bits (919), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 114/307 (37%), Positives = 174/307 (56%), Gaps = 12/307 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H+ VLLE+ +  L        LD TFG GG+SR           ++  D+DP A++ GQ 
Sbjct: 7   HITVLLEEAVEALAVRADGCYLDGTFGRGGHSRLILSQLGPDGRLLGFDKDPQAIATGQA 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            +     +F + Q +F++L     ++G    V G++ DLGVSS Q+D  +RGFSF   GP
Sbjct: 67  -LAAEDGRFVIVQRSFAELGSEAQERGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDGP 125

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G+SA++ +  A  +++ R+    GEE+ A R+A+A+V RR+  PF+ T DL
Sbjct: 126 LDMRMDPTRGVSAAEFIATAPAEEIARVFKEYGEERFAKRMANAVVARREVQPFERTADL 185

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + +++      +  + +PATR+FQ LRI VNNE+ +L  GL +A  AL+ GG L+V+SFH
Sbjct: 186 AEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLVVISFH 244

Query: 252 SLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK F    + G+   +   +P    P   +  I  K    +  +   N RSRSA
Sbjct: 245 SLEDRIVKLFMRKLAKGEADNMPRNLPIQFKPFEPKIKIPGKAQFASDTETKANPRSRSA 304

Query: 310 KLRAGMR 316
            +R   +
Sbjct: 305 VMRVAEK 311


>gi|260752706|ref|YP_003225599.1| S-adenosyl-methyltransferase MraW [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
 gi|258552069|gb|ACV75015.1| S-adenosyl-methyltransferase MraW [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
          Length = 332

 Score =  358 bits (919), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 143/331 (43%), Positives = 197/331 (59%), Gaps = 12/331 (3%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSNVIALDRD 67
           M+S        H+PVLL++VI  L+P  G + +D TFGAGGYSR+   K  + VIA DRD
Sbjct: 1   MTS--DSFSAPHIPVLLDEVIEALSPVEGGIYIDGTFGAGGYSRAILEKADTQVIAFDRD 58

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRG 124
           P A+  G   +  YK +  L    FS +    D +  K VDG+VFD+GVSSMQID  +RG
Sbjct: 59  PDAIREGAALVEKYKGRLRLVNDCFSNIDHHLDALDIKAVDGMVFDIGVSSMQIDRPERG 118

Query: 125 FSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           FS Q  GPLDMRM+ +G+SA + +N A  KD+  +L + GEE+Q+ R+A AIV  R   P
Sbjct: 119 FSIQADGPLDMRMAQAGLSAEEFLNNAQEKDIADVLYLYGEERQSRRVARAIVAAR---P 175

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
             TT  L+ +I++++ +   ++  PA   FQA+RI +N E++EL  GL++AE+ LK  G 
Sbjct: 176 LTTTFQLAKVIRQSLGYRPFDKKDPAAHCFQAIRIHLNRELDELKDGLQTAERFLKTKGC 235

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
           L VV+FHSLEDR+VK F    +G+     RH         VF S   + V   + ++A N
Sbjct: 236 LAVVTFHSLEDRIVKHFMREHAGQTGQVSRHQPVIPQQNPVFFSKPARPVRAGEAELARN 295

Query: 304 RRSRSAKLRAGMRTVERSIEDDSF--VHLPR 332
            R+RSA LRA  RT     ED S    H+PR
Sbjct: 296 PRARSATLRAVYRTETPFSEDISRPDTHIPR 326


>gi|71735888|ref|YP_276238.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|88909210|sp|Q48EF0|RSMH_PSE14 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|71556441|gb|AAZ35652.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320322458|gb|EFW78551.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320330073|gb|EFW86060.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330875017|gb|EGH09166.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 313

 Score =  358 bits (919), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 114/307 (37%), Positives = 174/307 (56%), Gaps = 12/307 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H+ VLLE+ +  L        LD TFG GG+SR           ++  D+DP A++ GQ 
Sbjct: 7   HITVLLEEAVEALEVRADGCYLDGTFGRGGHSRLILSQLGPDGRLLGFDKDPQAIATGQA 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            +     +F + Q +F++L     ++G    V G++ DLGVSS Q+D  +RGFSF   GP
Sbjct: 67  -LAAEDGRFVIVQRSFAELGSEAQERGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDGP 125

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G+SA++ +  A  +++ R+    GEE+ A R+A+A+V RR+  PF+ T DL
Sbjct: 126 LDMRMDPTRGVSAAEFIATAPAEEIARVFKEYGEERFAKRMANAVVARREVQPFERTADL 185

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + +++      +  + +PATR+FQ LRI VNNE+ +L  GL +A  AL+ GG L+V+SFH
Sbjct: 186 AEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLVVISFH 244

Query: 252 SLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK F    + G+   +   +P    P   +  I  K    +  +   N RSRSA
Sbjct: 245 SLEDRIVKLFMRKLAKGEADNMPRNLPIQFKPFEPKIKIHGKAQFASDTETKANPRSRSA 304

Query: 310 KLRAGMR 316
            +R   +
Sbjct: 305 VMRVAEK 311


>gi|254805557|ref|YP_003083778.1| S-adenosyl-methyltransferase [Neisseria meningitidis alpha14]
 gi|254669099|emb|CBA07673.1| S-adenosyl-methyltransferase [Neisseria meningitidis alpha14]
          Length = 328

 Score =  358 bits (919), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 117/318 (36%), Positives = 174/318 (54%), Gaps = 13/318 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           MS A  +    H+ VLL + +  L      V +D TFG GG+SR           +I  D
Sbjct: 1   MSGAESY---RHITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFD 57

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGD 122
           +DP A++  +E +    ++  +    F+  Q  +   G   VDG +FDLG+SS QID G 
Sbjct: 58  KDPQAIAVAEE-LARSDKRVGVVHGGFASFQAALDGLGIGKVDGALFDLGISSPQIDDGS 116

Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF+   PLDMRM  + G+SA++ +  A+ +DL  ++   GEE+ + +IA AIV +R 
Sbjct: 117 RGFSFRFDAPLDMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRA 176

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            +P  TT+ L+ ++ + V   +  +  PATR+FQA+RIF+N E+EE+   L      LK 
Sbjct: 177 ESPIDTTRKLAQIVAQNVRTRERGQ-DPATRTFQAVRIFINRELEEVGAVLPQVMCRLKE 235

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDV 300
           GG L V++FHSLEDR+VK+F    S      R      A  P +   I  + + P + ++
Sbjct: 236 GGRLAVIAFHSLEDRIVKQFVKKYSQHAPLPRWAAVREADLPELPLKIVGRALKPGEAEI 295

Query: 301 AFNRRSRSAKLRAGMRTV 318
           A N R+RSA LR   RT 
Sbjct: 296 AANPRARSAVLRVAERTA 313


>gi|261493507|ref|ZP_05990029.1| S-adenosylmethionine-dependent methyltransferase [Mannheimia
           haemolytica serotype A2 str. BOVINE]
 gi|261495860|ref|ZP_05992292.1| S-adenosylmethionine-dependent methyltransferase [Mannheimia
           haemolytica serotype A2 str. OVINE]
 gi|261308487|gb|EEY09758.1| S-adenosylmethionine-dependent methyltransferase [Mannheimia
           haemolytica serotype A2 str. OVINE]
 gi|261310840|gb|EEY12021.1| S-adenosylmethionine-dependent methyltransferase [Mannheimia
           haemolytica serotype A2 str. BOVINE]
          Length = 312

 Score =  358 bits (919), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 115/310 (37%), Positives = 170/310 (54%), Gaps = 16/310 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H+ VLL + +  L   P  + +D TFG GG+SR           +IA DRDP A++  Q
Sbjct: 6   KHITVLLHEAVDGLAIKPNGIYIDGTFGRGGHSRLILSKLGENGRLIATDRDPRAIAEAQ 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +F +    FS + +     G    +DG++ DLGVSS Q+D  +RGFSF + G
Sbjct: 66  TI---SDPRFQIEHTAFSAIPELCERMGLVGKIDGILLDLGVSSPQLDEAERGFSFMRDG 122

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ--SAPFQTT 188
           PLDMRM  + G+SA++ + Q + +DL  +L   GEE+ A RIA A+V   +  +     T
Sbjct: 123 PLDMRMDTTKGLSAAEWLAQVSAEDLAWVLKEFGEERFAKRIAQAVVSYNKSANEKISRT 182

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ +I   V F K+   HPATRSFQA+RIF+N+E++EL + L SA   L   G L ++
Sbjct: 183 LQLAQIIADAVPF-KDKHKHPATRSFQAIRIFINSELDELEKALNSALTVLAPEGRLSII 241

Query: 249 SFHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           SFHSLEDR+VK+F    S    V     ++ +     +      K ++P++ ++  N RS
Sbjct: 242 SFHSLEDRMVKQFVRKHSKGMDVPRGLPILEAELTKNIPLKTIGKAIMPSEAEIEANARS 301

Query: 307 RSAKLRAGMR 316
           RSA LR   +
Sbjct: 302 RSAVLRIAEK 311


>gi|149186210|ref|ZP_01864524.1| S-adenosyl-methyltransferase [Erythrobacter sp. SD-21]
 gi|148830241|gb|EDL48678.1| S-adenosyl-methyltransferase [Erythrobacter sp. SD-21]
          Length = 312

 Score =  358 bits (919), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 134/312 (42%), Positives = 192/312 (61%), Gaps = 9/312 (2%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVS--CGQ 75
             H+PVLL++V+  LNP PG V++DATFGAGGY+R+  + G+ V A DRDP A++     
Sbjct: 4   APHIPVLLDEVVEALNPQPGDVLIDATFGAGGYTRALLERGATVHAFDRDPDAIASGRTW 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                   +  L    FS++ + +   GV   DGVV D+GVSSMQ+D   RGF+F   GP
Sbjct: 64  RETEQTPPRLILHPHRFSEMLEVMRAAGVERVDGVVMDIGVSSMQLDQAHRGFAFSADGP 123

Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           LDMRMS  G SA+D +N A    +  ++   GEE+Q+ R+A AIV  R   P +TT DL+
Sbjct: 124 LDMRMSQDGESAADFLNTAAESTIADVVYQYGEERQSRRVARAIVAAR---PLETTGDLA 180

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +++K +    +++  PATR+FQA+RI VN E++EL+QGL +AE  L+ GG L VVSFHS
Sbjct: 181 RVVRKALGHKPHDKKDPATRTFQAIRIHVNGELDELSQGLSAAEHLLREGGRLAVVSFHS 240

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK+F    S      RH+  +     VF  ++ K + PT+ ++  N R+RS+ LR
Sbjct: 241 LEDRIVKRFLREASSTPSGSRHVPMAAQVDPVFSPVS-KAIKPTEAEIDRNPRARSSVLR 299

Query: 313 AGMRTVERSIED 324
             +RT   + E 
Sbjct: 300 HAVRTAAPAREA 311


>gi|238786715|ref|ZP_04630516.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia
           frederiksenii ATCC 33641]
 gi|238725083|gb|EEQ16722.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia
           frederiksenii ATCC 33641]
          Length = 320

 Score =  358 bits (919), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 120/311 (38%), Positives = 175/311 (56%), Gaps = 19/311 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H  VLL++ +  LN     + +D TFG GG+SR           +IA+DRDP A+   +
Sbjct: 13  KHTSVLLDEAVNGLNIRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDRDPQAIEAAK 72

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +FS+    FS L  YV +      +DGV+ DLGVSS Q+D  +RGFSF + G
Sbjct: 73  SI---TDPRFSIVHGPFSDLAHYVRELDLVGRIDGVLLDLGVSSPQLDDPERGFSFMRDG 129

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + G+SA+D + +A+  D+  +L   GEE+ A R+A AIV+R  + P   T++
Sbjct: 130 PLDMRMDPTRGLSAADWLMKASADDIAWVLKTFGEERFAKRLAKAIVERNLTQPMTRTKE 189

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ LI     F + ++ HPATRSFQA+RI++N+E+EE+ + L  A + L   G L V+SF
Sbjct: 190 LADLIANASPFREKHK-HPATRSFQAIRIYINSELEEIERALDGALEVLAPEGRLSVISF 248

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNRR 305
           HSLEDR+VK F    S        +  + A          +S+ K  ++P   +VA N R
Sbjct: 249 HSLEDRIVKNFIRHHSRGPQVPAGLPLTEAQLRSMGGRSLKSVGK--MMPPDAEVAENPR 306

Query: 306 SRSAKLRAGMR 316
           +RS+ LR   R
Sbjct: 307 ARSSVLRFAER 317


>gi|304383929|ref|ZP_07366386.1| S-adenosyl-methyltransferase MraW [Prevotella marshii DSM 16973]
 gi|304335007|gb|EFM01280.1| S-adenosyl-methyltransferase MraW [Prevotella marshii DSM 16973]
          Length = 305

 Score =  357 bits (918), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 109/304 (35%), Positives = 159/304 (52%), Gaps = 16/304 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HVPVLL + +  L   P  V +D TFG GG+SR        G  + A D+D  A     +
Sbjct: 9   HVPVLLTESVDGLKIRPNGVYVDVTFGGGGHSREILARLGKGGQLYAFDQDADAEQNCPD 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                 ++F+  ++ F  L++++   G+   DG++ DLGVSS   D   RGFSF+ + PL
Sbjct: 69  -----DDRFTFVRSNFRYLKNWIHYYGIEKIDGLLADLGVSSHHFDDETRGFSFRFNAPL 123

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  +  +A+D+VN      L+ +    GE K A R+A AIV+ R   P  TTQDL+
Sbjct: 124 DMRMNKRAKTTAADIVNHYTETQLSDLFYGYGELKNARRMAAAIVRERAENPIVTTQDLT 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
             ++  +   K +      R FQALRI VN E+  L + L SA + L  GG L ++++HS
Sbjct: 184 DCMRPLI--RKEHEKKDMARLFQALRIEVNQEMTALKEMLESATELLSDGGRLSIITYHS 241

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK    + +      +        P   Q I  K  VP+ ++   N RSRSAKLR
Sbjct: 242 LEDRMVKNLMKTGNTDGEQKKDFFGRMETP--LQPIGNKPTVPSDDEQQRNPRSRSAKLR 299

Query: 313 AGMR 316
              +
Sbjct: 300 IAEK 303


>gi|261345652|ref|ZP_05973296.1| S-adenosyl-methyltransferase MraW [Providencia rustigianii DSM
           4541]
 gi|282566134|gb|EFB71669.1| S-adenosyl-methyltransferase MraW [Providencia rustigianii DSM
           4541]
          Length = 317

 Score =  357 bits (918), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 122/321 (38%), Positives = 171/321 (53%), Gaps = 18/321 (5%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPF 69
           +      HV VLL++ +  LN  P  + +D TFG GG+SR           +IA+DRDP 
Sbjct: 1   MTQQQFKHVTVLLDEAVNGLNLKPNGIYIDGTFGRGGHSRLILSQLGENGRLIAIDRDPE 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGF 125
           A+   QE       +F +    FS + DY  ++G    +DGV+ DLGVSS Q+D  +RGF
Sbjct: 61  AIKAAQEI---DDPRFMIKHGPFSAIADYAEEEGLVGKIDGVLLDLGVSSPQLDDAERGF 117

Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR---Q 181
           SF + GPLDMRM  + G SA+  +  A   D+  +L   GEE+ A RIA AIV+R    +
Sbjct: 118 SFMRDGPLDMRMDPTHGQSAAQWLMTAEADDIAWVLKTFGEERFAKRIARAIVERNHNPE 177

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
             P   T+ L+ LI K     K+   HPATRSFQA+RI++N+E+EE+ + L  A   L  
Sbjct: 178 EEPLTRTRHLAELIAKVSPM-KDRHKHPATRSFQAIRIYINSELEEIEKALNGAMSVLAP 236

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQE 298
            G L V+SFHSLEDRLVK+F    S        +  + A        +      + P+  
Sbjct: 237 EGRLSVISFHSLEDRLVKRFIRQHSSGPSVPPGIPLTEAQIKELGAAKLRGLGKMKPSDS 296

Query: 299 DVAFNRRSRSAKLRAGMRTVE 319
           ++  N R+RS+ LR   R  E
Sbjct: 297 EIDENPRARSSVLRFAERAPE 317


>gi|167035511|ref|YP_001670742.1| S-adenosyl-methyltransferase MraW [Pseudomonas putida GB-1]
 gi|262825111|sp|B0KFT4|RSMH_PSEPG RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|166861999|gb|ABZ00407.1| S-adenosyl-methyltransferase MraW [Pseudomonas putida GB-1]
          Length = 315

 Score =  357 bits (918), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 115/308 (37%), Positives = 175/308 (56%), Gaps = 12/308 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
           +H+ VLL++ +  L        LD TFG GG+SR           ++  D+DP A++ GQ
Sbjct: 8   NHITVLLDEAVEALALRADGCYLDGTFGRGGHSRLILSKLGPQGRLLGFDKDPQAIATGQ 67

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
             +     +F + Q +F++L   V ++G    V GV+ DLGVSS Q+D  +RGFSF   G
Sbjct: 68  A-LAAEDGRFVIVQRSFAELGAEVAERGLHGKVSGVLLDLGVSSPQLDDPERGFSFLNDG 126

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+   GISA++ +  A V+++ R+    GEE+ A R+A A+V+RR+  PF  T D
Sbjct: 127 PLDMRMNPGQGISAAEFIATAPVEEIARVFKEYGEERFAGRMARAVVERREKQPFTRTAD 186

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ +++      +  + +PATR+FQ LRI VNNE+ +L  GL +A  AL+ GG L V+SF
Sbjct: 187 LAEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLAVISF 245

Query: 251 HSLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+VK F      G+   +   +P        +  +  K    ++ ++  N RSRS
Sbjct: 246 HSLEDRIVKLFMRKLVKGEADNLPRNLPVQHKVFEPKIKLIGKAQFASEAELKANPRSRS 305

Query: 309 AKLRAGMR 316
           A +R   +
Sbjct: 306 AVMRVAEK 313


>gi|302185277|ref|ZP_07261950.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv.
           syringae 642]
          Length = 313

 Score =  357 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 114/307 (37%), Positives = 173/307 (56%), Gaps = 12/307 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H+ VLLE+ +  L        LD TFG GG+SR           ++  D+DP A++ GQ 
Sbjct: 7   HITVLLEEAVEALAVRADGCYLDGTFGRGGHSRLILSQLGPDGRLLGFDKDPQAIATGQA 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            +     +F + Q +F++L     ++G    V G++ DLGVSS Q+D  +RGFSF   GP
Sbjct: 67  -LAAEDGRFVIVQRSFAELGSEAQERGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDGP 125

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G+SA+  +  A  +++ R+    GEE+ A R+A+A+V RR+  PF+ T DL
Sbjct: 126 LDMRMDPTRGVSAAQFIATAPAEEIARVFKEYGEERFAKRMANAVVARREVQPFERTADL 185

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + +++      +  + +PATR+FQ LRI VNNE+ +L  GL +A  AL+ GG L+V+SFH
Sbjct: 186 AEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLVVISFH 244

Query: 252 SLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK F    + G+   +   +P    P   +  I  K    +  +   N RSRSA
Sbjct: 245 SLEDRIVKLFMRKLAKGEADNMPRNLPIQFKPFEPKIKIHGKAQFASDVETKANPRSRSA 304

Query: 310 KLRAGMR 316
            +R   +
Sbjct: 305 VMRVAEK 311


>gi|254419187|ref|ZP_05032911.1| S-adenosyl-methyltransferase MraW [Brevundimonas sp. BAL3]
 gi|196185364|gb|EDX80340.1| S-adenosyl-methyltransferase MraW [Brevundimonas sp. BAL3]
          Length = 322

 Score =  357 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 141/313 (45%), Positives = 185/313 (59%), Gaps = 5/313 (1%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQ 75
           T   H PVLL +VI  L P PG V++DATFGAGGY+R+    G+ VI LDRDP       
Sbjct: 2   TEAPHAPVLLAEVIEALKPGPGDVVIDATFGAGGYTRAILATGAQVIGLDRDPTVQPHAD 61

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              +D+  QF L +  FS L     D G   +DG VFD+GVSSMQ+D  +RGFSF + GP
Sbjct: 62  AVAKDFPGQFQLIRTPFSGLAQAFADSGKAKLDGAVFDIGVSSMQLDQAERGFSFMRDGP 121

Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           LDMRMS  G +A+D+VN  +   L  I  + GEE+Q+ R+A AI++RR    F  T DL+
Sbjct: 122 LDMRMSDEGETAADIVNSWDHGPLAHIFKLYGEERQSGRVATAILRRRVEQSFTRTLDLA 181

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +++K +   +   IHPATR FQALRI VN+E+ EL +GL +AE  L  GG L VV+FHS
Sbjct: 182 EVVEKALGGRRGAPIHPATRVFQALRIAVNDELGELERGLEAAEATLAPGGRLAVVTFHS 241

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           LEDR+VK F   R+G   A     P   +     F    K      + + + N R+RSAK
Sbjct: 242 LEDRIVKAFLTERTGNTPAGSRHAPIAVDPRKPSFTLQFKGAREAGEGERSTNPRARSAK 301

Query: 311 LRAGMRTVERSIE 323
           LRA +RT   +  
Sbjct: 302 LRAAVRTEAPAWG 314


>gi|242238092|ref|YP_002986273.1| S-adenosyl-methyltransferase MraW [Dickeya dadantii Ech703]
 gi|263446348|sp|C6C9K0|RSMH_DICDC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|242130149|gb|ACS84451.1| S-adenosyl-methyltransferase MraW [Dickeya dadantii Ech703]
          Length = 313

 Score =  357 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 121/312 (38%), Positives = 175/312 (56%), Gaps = 15/312 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72
               H  VLL++ +  LN     + +D TFG GG+SR           ++A+DRDP AVS
Sbjct: 3   ETFKHTTVLLDEAVNGLNIRSNGIYIDGTFGRGGHSRLILSHLGTDGQLLAIDRDPQAVS 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128
                   +  +FS+    FS L DYV ++G    +DG++ DLGVSS Q+D  +RGFSF 
Sbjct: 63  AAS---AIHDARFSIIHGPFSSLADYVAERGLVGRIDGILLDLGVSSPQLDDPERGFSFM 119

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           + GPLDMRM  S G+SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   
Sbjct: 120 RDGPLDMRMDPSRGVSAAEWLMNAEADDIAWVLKTFGEERFAKRIARAIVERNRVEPLTR 179

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T+ L+ LI       + ++ HPATRSFQA+RI++N+E++E+ + L  A + L   G L V
Sbjct: 180 TKALAELIAAACPIREKHK-HPATRSFQAIRIYINSELDEIERALEGALQVLAPHGRLSV 238

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNR 304
           +SFHSLEDR+VK+F    S        +  + A        T K V   +P++ +V  N 
Sbjct: 239 ISFHSLEDRIVKRFIRQHSRGPQVPAGLPLTEAQLKSQGGRTLKAVGKMMPSESEVGENP 298

Query: 305 RSRSAKLRAGMR 316
           R+RS+ LR   R
Sbjct: 299 RARSSVLRFAER 310


>gi|312888802|ref|ZP_07748365.1| S-adenosyl-methyltransferase MraW [Mucilaginibacter paludis DSM
           18603]
 gi|311298677|gb|EFQ75783.1| S-adenosyl-methyltransferase MraW [Mucilaginibacter paludis DSM
           18603]
          Length = 300

 Score =  357 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 112/304 (36%), Positives = 162/304 (53%), Gaps = 16/304 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H PV+L + I  LN  P    +D TFG GG+SR   K       +IA D+D  A +   +
Sbjct: 5   HNPVMLAECIEGLNINPEGTYVDVTFGGGGHSREILKHLGPQGKLIAFDQDVDAQANAID 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                 E+F      F  L+++    G   VDG++ DLGVSS Q D  +RGFS +    L
Sbjct: 65  -----DERFVFVDQNFRYLKNFCRLHGAIPVDGILADLGVSSHQFDKAERGFSTRFDADL 119

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  S   +A D+VN     DL RI G+ GE + A  +A  IV  R ++P  T  DL 
Sbjct: 120 DMRMDQSATQTAKDIVNTYAEADLHRIFGMYGEIQNAKTLARTIVTARLNSPINTIADLK 179

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
             I   +   K N+     + FQALRI VN E+E L + L+   + L  GG L+V+S+HS
Sbjct: 180 GAIATLIPRGKENK--YLAQVFQALRIEVNQELEALQEFLKQTVEVLAPGGRLVVMSYHS 237

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDRLVK F A         + +  ++  P  F+++++K +  T++++  N R+RSAKLR
Sbjct: 238 LEDRLVKSFIAKGKFSGELEKDIYGNDDRP--FEAVSRKAITATEDEIKLNNRARSAKLR 295

Query: 313 AGMR 316
             ++
Sbjct: 296 IAVK 299


>gi|301155878|emb|CBW15347.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Haemophilus parainfluenzae T3T1]
          Length = 320

 Score =  357 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 123/318 (38%), Positives = 174/318 (54%), Gaps = 20/318 (6%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
           +  +H+ VLL + +  L      + +D TFG GG+SR           +IA+DRDP A++
Sbjct: 6   SAPEHITVLLHEAVNGLALKENGIYIDGTFGRGGHSRLILSQLSENGRLIAIDRDPRAIA 65

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             ++       +F +   +FS + D          +DG++ DLGVSS Q+D  DRGFSF 
Sbjct: 66  EAEKI---QDPRFHIEHNSFSHIPDICQKLDLVGKIDGILLDLGVSSPQLDEADRGFSFM 122

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP--- 184
           K GPLDMRM  + G+SA++ + Q +V DLT +L   GEE+ A RIA AIV+  +SA    
Sbjct: 123 KDGPLDMRMDTTQGLSAAEWLKQVSVDDLTWVLKTFGEERFAKRIATAIVEFNKSAVKNG 182

Query: 185 ---FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
                 T  L+ LI + V F K+   HPATRSFQA+RI++N E++EL   L SA   L  
Sbjct: 183 TECLSRTSQLAELIAQAVPF-KDKHKHPATRSFQAIRIYINAELDELESVLNSALDMLAP 241

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ--SITKKVVVPTQED 299
            G L ++SFHSLEDR+VK F   +S      R +          Q   I  K + P++ +
Sbjct: 242 EGRLSIISFHSLEDRMVKHFMRKQSKGEDIPRGLPLREDQIQRNQKLKIIGKAIQPSEAE 301

Query: 300 VAFNRRSRSAKLRAGMRT 317
           ++ N RSRSA LR   R 
Sbjct: 302 ISANPRSRSAVLRIAERV 319


>gi|288801599|ref|ZP_06407041.1| S-adenosyl-methyltransferase MraW [Prevotella melaninogenica D18]
 gi|288335641|gb|EFC74074.1| S-adenosyl-methyltransferase MraW [Prevotella melaninogenica D18]
          Length = 314

 Score =  357 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 111/306 (36%), Positives = 172/306 (56%), Gaps = 13/306 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H+PVLL + I  LN     V +D TFG GG+SR        GS++ + D+D  A      
Sbjct: 9   HIPVLLNESIEGLNLHANGVYVDVTFGGGGHSREILSRLAEGSHLYSFDQDADAEQNIDN 68

Query: 77  --TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                +  ++F+  ++ F  L++++   GV   DG++ DLGVSS   D   RGFSF+   
Sbjct: 69  MGLSEEQVDRFTFVRSNFRYLKNWMQYYGVEYIDGLLADLGVSSHHFDDETRGFSFRFEA 128

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+  +GI+A+D++N  + + L  IL + GE KQ+ RIA AIVK R    ++TT D
Sbjct: 129 PLDMRMNKRAGITAADILNDYDEERLADILYLYGELKQSRRIASAIVKARGQKTYKTTND 188

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L + I+    +++  +     + FQALRI VN+E++ L + L +A + L+ GG L V+++
Sbjct: 189 LLTTIEPFFQWAREKK--DMAKMFQALRIEVNHEMDALKEMLMAATELLRPGGRLSVITY 246

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDR+VK    S + +    +        P  F+ +  KV+  + ++   N RSRSAK
Sbjct: 247 HSLEDRMVKNIMKSGNIEGKVKQDFFGRTETP--FRLVNNKVITASNDEQERNPRSRSAK 304

Query: 311 LRAGMR 316
           LR   +
Sbjct: 305 LRIAEK 310


>gi|325299150|ref|YP_004259067.1| Ribosomal RNA small subunit methyltransferase H [Bacteroides
           salanitronis DSM 18170]
 gi|324318703|gb|ADY36594.1| Ribosomal RNA small subunit methyltransferase H [Bacteroides
           salanitronis DSM 18170]
          Length = 305

 Score =  357 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 105/309 (33%), Positives = 160/309 (51%), Gaps = 17/309 (5%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72
           T   H+PVLL + +  +N     + +D T G GG+SR   +    GS +   D+D  A  
Sbjct: 5   TKTYHIPVLLHESVDGMNLHENGIYVDVTLGGGGHSREILRRMDKGSRLFGFDQDEDA-- 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQK 129
              E       +F+  ++ F  L++++   GV   D ++ DLGVSS  +D   RGFSF+ 
Sbjct: 63  ---ERNAPADTRFTFVRSNFRYLRNFLRYYGVEQADAILADLGVSSHHLDDASRGFSFRF 119

Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM+  + ++A+DVVN  +   L  I  + GE K + R+A  +VK R   P   T
Sbjct: 120 DAPLDMRMNKRAKLTAADVVNTYDESRLADIFYLYGEMKNSRRLASDLVKARAQKPVALT 179

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            DL  +++      K        + FQALRI VN+E++ L + L +A   LK GG L V+
Sbjct: 180 GDLIGIVKPYCP--KEREKKELAKIFQALRIEVNHEMDALKEMLEAAVDVLKPGGRLAVI 237

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           ++HSLEDR+VK    + + +  A +    +   P        K +VP +E++  N RSRS
Sbjct: 238 TYHSLEDRMVKNMMKAGNVEGKAEQDFYGNFRSP---LRTVGKPIVPGEEEIGRNPRSRS 294

Query: 309 AKLRAGMRT 317
           AKLR   + 
Sbjct: 295 AKLRIAEKV 303


>gi|254362469|ref|ZP_04978577.1| S-adenosylmethionine-dependent methyltransferase [Mannheimia
           haemolytica PHL213]
 gi|153094061|gb|EDN74973.1| S-adenosylmethionine-dependent methyltransferase [Mannheimia
           haemolytica PHL213]
          Length = 312

 Score =  357 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 115/310 (37%), Positives = 169/310 (54%), Gaps = 16/310 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H+ VLL + +  L   P  + +D TFG GG+SR           +IA DRDP A++  Q
Sbjct: 6   KHITVLLHEAVDGLAIKPNGIYIDGTFGRGGHSRLILSKLGENGRLIATDRDPRAIAEAQ 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +F +    FS + +     G    +DG++ DLGVSS Q+D  +RGFSF + G
Sbjct: 66  TI---SDPRFQIEHTAFSAIPELCERMGLVGKIDGILLDLGVSSPQLDEAERGFSFMRDG 122

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ--SAPFQTT 188
           PLDMRM  + G+SA++ + Q + +DL  +L   GEE+ A RIA A+V   +  +     T
Sbjct: 123 PLDMRMDTTKGLSAAEWLAQVSAEDLAWVLKEFGEERFAKRIAQAVVSYNKSANEKISRT 182

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ +I   V F K+   HPATRSFQA+RIF+N E++EL + L SA   L   G L ++
Sbjct: 183 LQLAQIIADAVPF-KDKHKHPATRSFQAIRIFINGELDELEKALNSALTVLAPEGRLSII 241

Query: 249 SFHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           SFHSLEDR+VK+F    S    V     ++ +     +      K ++P++ ++  N RS
Sbjct: 242 SFHSLEDRMVKQFVRKHSKGMDVPRGLPILEAELTKNIPLKTIGKAIMPSEAEIEANARS 301

Query: 307 RSAKLRAGMR 316
           RSA LR   +
Sbjct: 302 RSAVLRIAEK 311


>gi|84625268|ref|YP_452640.1| S-adenosyl-methyltransferase MraW [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|188575290|ref|YP_001912219.1| S-adenosyl-methyltransferase MraW [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|84369208|dbj|BAE70366.1| cell division protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188519742|gb|ACD57687.1| S-adenosyl-methyltransferase MraW [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 347

 Score =  357 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 118/309 (38%), Positives = 174/309 (56%), Gaps = 7/309 (2%)

Query: 12  AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDP 68
            +      HVPVL  +V+  L        LD TFG GG++R   +    G  ++ +D+DP
Sbjct: 10  PVSQPPAAHVPVLYTQVLDGLQVTENGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDP 69

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
            A++  ++T      + S+ + +F+ L   V    VDG++ DLGVSS Q+D   RGFSF 
Sbjct: 70  DAIAVAEQTFGG-DARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLDVAGRGFSFG 128

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           K GPLDMRM   SG SA+  + QA  +++  +L   GEE+Q+ RIA AIV RR   P   
Sbjct: 129 KDGPLDMRMDPDSGQSAAQWLAQATDREIADVLWAYGEERQSRRIARAIVARRAEQPLLR 188

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T  L+ LI   +    +++ HPATRSFQA+RI++N E+++L  GL +A  ALK GG L V
Sbjct: 189 TAQLADLIASVMPRG-DSKTHPATRSFQAIRIYINRELDDLETGLDAALAALKPGGRLAV 247

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +SFHSLEDR+VK+F A  +    + R +  +       Q ++   +     ++  N R+R
Sbjct: 248 ISFHSLEDRIVKQFMARYAKAPPSNRRLPEAQPFVPTLQLVS-GAIKADDTELNVNPRAR 306

Query: 308 SAKLRAGMR 316
           SA LR   +
Sbjct: 307 SAVLRVAEK 315


>gi|157373543|ref|YP_001472143.1| S-adenosyl-methyltransferase MraW [Shewanella sediminis HAW-EB3]
 gi|262826558|sp|A8FQ92|RSMH_SHESH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|157315917|gb|ABV35015.1| S-adenosyl-methyltransferase MraW [Shewanella sediminis HAW-EB3]
          Length = 314

 Score =  357 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 119/307 (38%), Positives = 174/307 (56%), Gaps = 13/307 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H+ VLL + +A LN     + +D TFG GG+SR   K       +IA+DRDP A++  ++
Sbjct: 8   HLSVLLTETVAGLNIKEDGIYIDGTFGRGGHSREVLKHLGENGRLIAIDRDPQAIAAAEQ 67

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              D   +FS+    F QL  YV D G    +DGV+ D GVSS Q+D  +RGFSF + GP
Sbjct: 68  FADDA--RFSIVHGGFGQLATYVEDLGLKGKIDGVLLDFGVSSPQLDDAERGFSFLRDGP 125

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G +A+D + +A ++D+  +    GEEK +  IA  I   R+  PF  T++L
Sbjct: 126 LDMRMDNSQGETAADWIARAEIEDMAWVFKTYGEEKNSRHIARCIAADREKTPFLRTKEL 185

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI + +  +K    HPATR FQA+RI++N+E+E++ Q L  A   L   G L V+SFH
Sbjct: 186 ADLIAR-ISKNKERNKHPATRVFQAIRIYINSELEQIDQALEGALSVLAPHGRLSVISFH 244

Query: 252 SLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK+F         V     +  +  + +       K + P++E+V  N R+RS+
Sbjct: 245 SLEDRMVKRFIRRHCQGESVPHGLPITEAEINKSRLLKGIGKAIKPSEEEVERNTRARSS 304

Query: 310 KLRAGMR 316
            LR   R
Sbjct: 305 VLRIAER 311


>gi|263506507|sp|Q2NZB1|RSMH_XANOM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263506516|sp|B2SNY6|RSMH_XANOP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 337

 Score =  357 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 118/308 (38%), Positives = 174/308 (56%), Gaps = 7/308 (2%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69
           +      HVPVL  +V+  L        LD TFG GG++R   +    G  ++ +D+DP 
Sbjct: 1   MSQPPAAHVPVLYTQVLDGLQVTENGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDPD 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
           A++  ++T      + S+ + +F+ L   V    VDG++ DLGVSS Q+D   RGFSF K
Sbjct: 61  AIAVAEQTFGG-DARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLDVAGRGFSFGK 119

Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM   SG SA+  + QA  +++  +L   GEE+Q+ RIA AIV RR   P   T
Sbjct: 120 DGPLDMRMDPDSGQSAAQWLAQATDREIADVLWAYGEERQSRRIARAIVARRAEQPLLRT 179

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ LI   +    +++ HPATRSFQA+RI++N E+++L  GL +A  ALK GG L V+
Sbjct: 180 AQLADLIASVMPRG-DSKTHPATRSFQAIRIYINRELDDLETGLDAALAALKPGGRLAVI 238

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDR+VK+F A  +    + R +  +       Q ++   +     ++  N R+RS
Sbjct: 239 SFHSLEDRIVKQFMARYAKAPPSNRRLPEAQPFVPTLQLVS-GAIKADDTELNVNPRARS 297

Query: 309 AKLRAGMR 316
           A LR   +
Sbjct: 298 AVLRVAEK 305


>gi|21241542|ref|NP_641124.1| S-adenosyl-methyltransferase MraW [Xanthomonas axonopodis pv. citri
           str. 306]
 gi|24212036|sp|Q8PPB5|RSMH_XANAC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|21106893|gb|AAM35660.1| cell division protein [Xanthomonas axonopodis pv. citri str. 306]
          Length = 342

 Score =  357 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 123/334 (36%), Positives = 180/334 (53%), Gaps = 11/334 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69
           +  +   HVPVL  +V+  L        LD TFG GG++R   +    G  ++ +D+DP 
Sbjct: 1   MSQSPAAHVPVLYTQVLDGLQVTENGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDPE 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
           A++   E       + S+ + +F+ L   V    VDG++ DLGVSS Q+D   RGFSF K
Sbjct: 61  AIAVA-EHSFGGDARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLDVAGRGFSFGK 119

Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM   SG SA++ + QA+ +++  +L   GEE+Q+ RIA AIV RR   P   T
Sbjct: 120 DGPLDMRMDPDSGQSAAEWLAQASDREIADVLWTYGEERQSRRIARAIVARRAEQPLLRT 179

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ LI   +    +++ HPATRSFQA+RI +N E+ +L  GL +A  ALK GG L V+
Sbjct: 180 AQLADLIASVMPRG-DSKTHPATRSFQAIRIHINRELADLEAGLDAALGALKPGGRLAVI 238

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDR+VK+F A  +    + R +  +    A  Q ++   +     ++  N R+RS
Sbjct: 239 SFHSLEDRIVKQFMARYAKAPPSNRRLPEAQPFVATLQLVS-GAIKADDAELHVNPRARS 297

Query: 309 AKLRAGMR----TVERSIEDDSFVHLPRLPTLSQ 338
           A LR   +      E  +   +     R PT   
Sbjct: 298 AVLRVAEKLGLGNGESGMGKGNSAAASRFPTADS 331


>gi|260596507|ref|YP_003209078.1| 16S rRNA m(4)C1402 methyltranserfase [Cronobacter turicensis z3032]
 gi|260215684|emb|CBA28014.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Cronobacter turicensis z3032]
          Length = 313

 Score =  357 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 121/312 (38%), Positives = 178/312 (57%), Gaps = 19/312 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++   
Sbjct: 6   KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEQGRLLAIDRDPQAIAAAA 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +FS+    FS L DYV ++     +DG++ DLGVSS Q+D  +RGFSF + G
Sbjct: 66  ---AIDDPRFSIIHGPFSALGDYVRERELQGKIDGILLDLGVSSPQLDDPERGFSFMRDG 122

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P   T++
Sbjct: 123 PLDMRMDPTRGQSAAEWLRNAEEADIAWVLKTFGEERFAKRIARAIVERNRELPMTRTKE 182

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+ A   L  GG L V+SF
Sbjct: 183 LAEVVAAATPI-KDKFKHPATRTFQAVRIWVNSELEEIEQALKGAVDVLAPGGRLSVISF 241

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305
           HSLEDRLVK+F   +S        +  + A          +++ K  ++P + +VA N R
Sbjct: 242 HSLEDRLVKRFMREQSRGPQVPAGLPMTEAQLQKLGGRDLRALGK--LMPGEAEVAENPR 299

Query: 306 SRSAKLRAGMRT 317
           +RS+ LR   RT
Sbjct: 300 ARSSVLRIAERT 311


>gi|257125535|ref|YP_003163649.1| S-adenosyl-methyltransferase MraW [Leptotrichia buccalis C-1013-b]
 gi|257049474|gb|ACV38658.1| S-adenosyl-methyltransferase MraW [Leptotrichia buccalis C-1013-b]
          Length = 308

 Score =  357 bits (917), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 109/307 (35%), Positives = 172/307 (56%), Gaps = 10/307 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQE 76
           H PVL ++V+  +      V +D T G GG++    +     S V+A+D+D  A+   ++
Sbjct: 4   HKPVLFDEVMDNIITDKDAVYVDCTLGGGGHTEGILENSSKNSKVVAIDQDVQAIEFAKK 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  Y  +  +FQ  F  +   V   G   VD ++ D+GVSS Q+D   RGFS++    L
Sbjct: 64  RLEKYANKLQIFQDNFRNIDTAVYLAGFEKVDRILMDIGVSSNQLDNAKRGFSYRFEARL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  +  ISA +V+N  + K+L  I+   GEE ++ +IA  IV+ R+    +TT +L+
Sbjct: 124 DMRMDSNLKISAYEVINNFSEKELADIIYKYGEEPKSRKIAKKIVEYRKIKAIETTTELA 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            ++ K++   K+ + HPA R+FQA+RIFVN E+E L++ L  A K L   G L+V++FHS
Sbjct: 184 DIVIKSI--GKSMKRHPAKRTFQAIRIFVNKELEILSETLDKAVKLLGKNGKLLVITFHS 241

Query: 253 LEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK+ F              I      ++ + ITKK +V  + ++A N R+ SAKL
Sbjct: 242 LEDRIVKEKFREYENPCTCPPDIPICVCGKQSLGKVITKKPIVAKELELAENNRAHSAKL 301

Query: 312 RAGMRTV 318
           R   R+ 
Sbjct: 302 RIFERSE 308


>gi|189464532|ref|ZP_03013317.1| hypothetical protein BACINT_00874 [Bacteroides intestinalis DSM
           17393]
 gi|189438322|gb|EDV07307.1| hypothetical protein BACINT_00874 [Bacteroides intestinalis DSM
           17393]
          Length = 304

 Score =  357 bits (917), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 104/310 (33%), Positives = 160/310 (51%), Gaps = 16/310 (5%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFA 70
           +  +  HVPVLL   +  +N  P    +D TFG GG+SR        G  ++  D+D  A
Sbjct: 3   NEELTYHVPVLLMPSVDGMNIRPDGTYIDVTFGGGGHSREILSRLGDGGRLLGFDQDEDA 62

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSF 127
                E        F+  ++ F  L +++       VD ++ DLGVSS   D  +RGFSF
Sbjct: 63  -----ERNIVDNPHFTFVRSNFRYLHNFLRYHNIEEVDSILADLGVSSHHFDDSERGFSF 117

Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           +  G LDMRM+  +G +A+D++N  + + L  I  + GE K + ++A  IVK R      
Sbjct: 118 RFDGALDMRMNKRAGDTAADIINNYDEERLADIFYLYGELKNSRKLASVIVKARAGQKIT 177

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T  +   +I+    F +        + FQALRI VN E+E L + L +A +ALK GG L+
Sbjct: 178 TIGEFLEVIKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLYAATEALKPGGRLV 235

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+++HSLEDR+VK    + + +    +    +   P  F+ +  KV+VP   ++  N RS
Sbjct: 236 VITYHSLEDRMVKNIMKTGNVEGKMEKDFFGNVQTP--FRLVNNKVIVPDDAEIERNPRS 293

Query: 307 RSAKLRAGMR 316
           RSAKLR   +
Sbjct: 294 RSAKLRIAEK 303


>gi|325923945|ref|ZP_08185535.1| S-adenosyl-methyltransferase MraW [Xanthomonas gardneri ATCC 19865]
 gi|325545571|gb|EGD16835.1| S-adenosyl-methyltransferase MraW [Xanthomonas gardneri ATCC 19865]
          Length = 352

 Score =  357 bits (917), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 120/331 (36%), Positives = 180/331 (54%), Gaps = 11/331 (3%)

Query: 12  AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDP 68
            +      HVPVL  +V+  L        LD TFG GG++R   +    G  ++ +D+DP
Sbjct: 10  PVSQPPAAHVPVLYTQVLDGLQVIENGTYLDGTFGRGGHARGVLQHLGPGGRLLVMDKDP 69

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
            A++  ++       + S+ + +F+ L   V    VDG++ DLGVSS Q+D   RGFSF 
Sbjct: 70  EAIAVAEQAFGG-DARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLDVAGRGFSFG 128

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           K GPLDMRM    G SA++ +  A+ +++  +L   GEE+Q+ RIA AIV RR   P   
Sbjct: 129 KDGPLDMRMDPDVGQSAAEWLAHASDREIADVLWTYGEERQSRRIARAIVARRTEQPLLR 188

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T  L+ LI   +    +++ HPATRSFQA+RI++N E+++L  GL +A  ALK GG L V
Sbjct: 189 TAQLAELIASVMPRG-DSKTHPATRSFQAIRIYINRELDDLEAGLDAALGALKPGGRLAV 247

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +SFHSLEDR+VK+F A  +    + R +  +       Q +T   V    ++++ N R+R
Sbjct: 248 ISFHSLEDRIVKQFMARYAKAPPSNRRLPEAQPFVPTLQLVT-GAVKADFDELSVNPRAR 306

Query: 308 SAKLRAGMR----TVERSIEDDSFVHLPRLP 334
           SA LR   +      E  +   +     R P
Sbjct: 307 SAVLRVAEKLGMENGESGMGKGNSATASRFP 337


>gi|189423747|ref|YP_001950924.1| S-adenosyl-methyltransferase MraW [Geobacter lovleyi SZ]
 gi|263447561|sp|B3E3Z0|RSMH_GEOLS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|189420006|gb|ACD94404.1| S-adenosyl-methyltransferase MraW [Geobacter lovleyi SZ]
          Length = 313

 Score =  357 bits (917), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 123/307 (40%), Positives = 175/307 (57%), Gaps = 9/307 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
            H+ VL  +V+  L P PG   LD T G GG+S    +       +I +DRDP A++   
Sbjct: 5   HHLSVLAREVMEQLAPRPGGTYLDGTLGGGGHSELILEKIGPDGLLIGIDRDPAALAAAS 64

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E +R +   F   Q +F  L + +  +G++   G++ DLGVSS Q+D  +RGFSF+  GP
Sbjct: 65  ERLRRFGSCFRPLQGSFGDLAELLKQEGINTLDGLLLDLGVSSHQLDTDERGFSFRLDGP 124

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G SA+D++   +  +L +I+   GEE+ A +IA  IV+ RQ  P  TT  L
Sbjct: 125 LDMRMDRSCGDSAADLLQDCSAGELEQIIKEFGEERWAKKIALRIVQTRQETPITTTLQL 184

Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           + L+  T+       RIHPATR+FQALRI VN E+E++ QG+R+   ALKAGG + V+SF
Sbjct: 185 ADLVAGTIPRRFHEERIHPATRTFQALRIAVNQELEQVEQGIRAGIAALKAGGRIAVISF 244

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  F   +        M           + +T + V+   E+   N R+RSA
Sbjct: 245 HSLEDRIVKHLFREAATGCTCPPRMPYCVCNKKPQLRILTGRPVIAGPEETDRNPRARSA 304

Query: 310 KLRAGMR 316
           KLRA  +
Sbjct: 305 KLRAAEK 311


>gi|330957978|gb|EGH58238.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 313

 Score =  357 bits (917), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 114/312 (36%), Positives = 177/312 (56%), Gaps = 12/312 (3%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAV 71
           ++   H+ VLLE+ +  L        LD TFG GG+SR           ++  D+DP A+
Sbjct: 2   NSAFTHITVLLEEAVEALAVRADGCYLDGTFGRGGHSRLILSHLGPDGRLLGFDKDPQAI 61

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSF 127
           + GQ  +     +F + Q +F++L   V ++G    V G++ DLGVSS Q+D  +RGFSF
Sbjct: 62  ATGQA-LAAEDGRFVIVQRSFAELGSEVQERGLAGKVSGILLDLGVSSPQLDDPERGFSF 120

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
              GPLDMRM  + G+SA++ +  A  +++ R+    GEE+ A R+A+A+V+RR+  PF+
Sbjct: 121 MNDGPLDMRMDPTRGVSAAEFIASAPAEEIARVFKEYGEERFAKRMANAVVQRREIQPFE 180

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
            T DL+ +++      +  + +PATR+FQ LRI VNNE+ +L  GL +A   L+ GG L+
Sbjct: 181 RTADLAEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAALDTLEIGGRLV 239

Query: 247 VVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFNR 304
           V+SFHSLEDR+VK F    + G+   +   +P    P   +  I  K    +  +   N 
Sbjct: 240 VISFHSLEDRIVKLFMRKLAKGEADNMPRDLPIQFKPFEPKIKIHGKAQFASDAETKANP 299

Query: 305 RSRSAKLRAGMR 316
           RSRSA +R   +
Sbjct: 300 RSRSAVMRVAEK 311


>gi|312959049|ref|ZP_07773568.1| S-adenosyl-L-methionine-dependent methyltransferase [Pseudomonas
           fluorescens WH6]
 gi|311286819|gb|EFQ65381.1| S-adenosyl-L-methionine-dependent methyltransferase [Pseudomonas
           fluorescens WH6]
          Length = 315

 Score =  357 bits (917), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 117/308 (37%), Positives = 178/308 (57%), Gaps = 12/308 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
           +H+ VLL++ +  L        LD TFG GG+SR        G  ++  D+DP A++ GQ
Sbjct: 8   NHITVLLDEAVEALAVRADGCYLDGTFGRGGHSRLILSQLGPGGKLLGFDKDPQAIATGQ 67

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
             +     +F + Q +F++L   V ++G    V GV+ DLGVSS Q+D  +RGFSF   G
Sbjct: 68  A-LAAEDGRFVVVQRSFAELGAEVAERGMAGKVAGVLLDLGVSSPQLDDPERGFSFMNDG 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + G+SA+  +  A V+++ R+    GEE+ A R+A A+V+RR+  PF+ T D
Sbjct: 127 PLDMRMDPTRGVSAAQFIATAPVEEIARVFKEYGEERFAGRMARAVVERRELQPFERTAD 186

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ +++      +  + +PATR+FQ LRI VNNE+ +L  GL +A  AL+ GG L+V+SF
Sbjct: 187 LAEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLVVISF 245

Query: 251 HSLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+VK F      G+   +   +P      V +  I  K    ++ ++  N RSRS
Sbjct: 246 HSLEDRIVKLFMRRLVKGESDNLPRNLPVRFEAFVPKIKIHGKAQFASEAELKANPRSRS 305

Query: 309 AKLRAGMR 316
           A +R   +
Sbjct: 306 AVMRVAEK 313


>gi|311113332|ref|YP_003984554.1| S-adenosyl-methyltransferase MraW [Rothia dentocariosa ATCC 17931]
 gi|310944826|gb|ADP41120.1| S-adenosyl-methyltransferase MraW [Rothia dentocariosa ATCC 17931]
          Length = 364

 Score =  357 bits (917), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 117/308 (37%), Positives = 179/308 (58%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCG 74
           HVPV+L++ + LL P       V++D T G GG++ +  +  SN+  I +DRD  A +  
Sbjct: 53  HVPVMLDRCLELLEPAISRQDAVVIDGTLGMGGHTEAMLERFSNLTVIGIDRDAQAHAIA 112

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            E +  + ++F      +  ++D +   GV   DGV+ DLGVSSMQ+D   RGF++    
Sbjct: 113 VERLARFGDRFVPVHTVYDHIEDAMSAAGVTSVDGVLLDLGVSSMQLDERSRGFAYSYDA 172

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+    ++A  VVN+ +   L RI+   GEEK A+RIA  IV++R+  PF TT +
Sbjct: 173 PLDMRMNGDDELTARIVVNEYSENQLRRIIKNWGEEKFAARIAQHIVEQRKHTPFTTTGE 232

Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L + IQK V  + +    HPA R+FQALRI VN+E+E L + + +A  AL+ GG  + +S
Sbjct: 233 LVAAIQKAVPAAAQRKGGHPAKRTFQALRIEVNHELEALERAVPAALDALRLGGRFVAMS 292

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           +HSLED++VK+     +         +  + H    + IT+    PT+ ++A N R+ SA
Sbjct: 293 YHSLEDKIVKRALTEAATSKAPKGFPVELDEHQPTIRVITRGAEPPTEAEIAENPRAASA 352

Query: 310 KLRAGMRT 317
           KLRAG + 
Sbjct: 353 KLRAGEKI 360


>gi|268591763|ref|ZP_06125984.1| S-adenosyl-methyltransferase MraW [Providencia rettgeri DSM 1131]
 gi|291312724|gb|EFE53177.1| S-adenosyl-methyltransferase MraW [Providencia rettgeri DSM 1131]
          Length = 317

 Score =  357 bits (917), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 122/323 (37%), Positives = 174/323 (53%), Gaps = 22/323 (6%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPF 69
           +      HV VLL++ +  LN  P  + +D TFG GG+SR           +IA+DRDP 
Sbjct: 1   MTQQQFKHVTVLLDEAVNGLNIKPNGIYIDGTFGRGGHSRLILSQLGENGRLIAIDRDPE 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGF 125
           A+   Q        +F +    FS + +YV ++G    +DGV+ DLGVSS Q+D  +RGF
Sbjct: 61  AIKAAQTI---DDPRFMIKHGPFSAIAEYVEEEGLVGQIDGVLLDLGVSSPQLDDPERGF 117

Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR---Q 181
           SF + GPLDMRM  + G SA   +  A   D+  +L   GEE+ A RIA AIV+R    +
Sbjct: 118 SFMRDGPLDMRMDPTKGQSAQQWLMDAEADDIAWVLKTFGEERFAKRIARAIVERNHNPE 177

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
             P   T+ L+ LI K     K+   HPATRSFQA+RI++N+E+EE+ + L  A   L  
Sbjct: 178 EEPLTRTRHLAELIAKVSPM-KDRHKHPATRSFQAIRIYINSELEEIEKALEGAMNVLAP 236

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPT 296
            G L V+SFHSLEDRLVK+F    S        +  + A       A  + + K  + P+
Sbjct: 237 QGRLSVISFHSLEDRLVKRFIRKNSKGPSVPAGIPLTEAQIKELGAAQLRDLGK--MKPS 294

Query: 297 QEDVAFNRRSRSAKLRAGMRTVE 319
           + ++  N R+RS+ LR   +  E
Sbjct: 295 ENEIDENPRARSSVLRFAEKAAE 317


>gi|330501916|ref|YP_004378785.1| S-adenosyl-methyltransferase MraW [Pseudomonas mendocina NK-01]
 gi|328916202|gb|AEB57033.1| S-adenosyl-methyltransferase MraW [Pseudomonas mendocina NK-01]
          Length = 315

 Score =  357 bits (917), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 115/320 (35%), Positives = 182/320 (56%), Gaps = 19/320 (5%)

Query: 8   TMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIAL 64
           TM+  +      H+ VLL++ +  L        +D TFG GG+SR   +    G  ++  
Sbjct: 2   TMTDTL-----RHITVLLDEAVEGLAVRADGCYMDGTFGRGGHSRLILQKLGPGGRLLGF 56

Query: 65  DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDC 120
           D+DP A++ G E +     +F + Q +F++L D    +G    V G++ DLGVSS Q+D 
Sbjct: 57  DKDPLAIATG-EALAAEDGRFVVVQRSFAELGDEAVVRGISGQVSGILLDLGVSSPQLDD 115

Query: 121 GDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFSF   GPLDMRM+  +G+SA+D +  A+  ++ R++   GEE+ A R+A A+V+R
Sbjct: 116 PERGFSFLNDGPLDMRMNPHAGVSAADWIATADEDEIARVMKDYGEERFAKRMARAVVQR 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
           R   PF  T DL+ ++ +     +  + +PATR+FQ +RI VNNE+ +L +GL +A + L
Sbjct: 176 RAERPFTRTADLAKVLTEANPAWEKGK-NPATRAFQGIRIHVNNELGDLERGLEAALETL 234

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSG---KVMAVRHMIPSNAHPAVFQSITKKVVVPT 296
           + GG L+V+SFHSLEDR+VK+F   ++      +     I   A     + I  K V   
Sbjct: 235 EVGGRLVVISFHSLEDRIVKQFMKRQAKGEADKLPRDLPIIPKAFEPRLKLI-GKPVYAA 293

Query: 297 QEDVAFNRRSRSAKLRAGMR 316
           + ++  N RSRSA +R   +
Sbjct: 294 EAELKANPRSRSAVMRIAEK 313


>gi|68565414|sp|Q5GW34|RSMH_XANOR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 337

 Score =  357 bits (917), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 117/308 (37%), Positives = 174/308 (56%), Gaps = 7/308 (2%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69
           +      HVPVL  +V+  L        LD TFG GG++R   +    G  ++ +D+DP 
Sbjct: 1   MSQPPAAHVPVLYTQVLDGLQVTENGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDPE 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
           A++  ++T      + S+ + +F+ L   V    VDG++ DLGVSS Q++   RGFSF K
Sbjct: 61  AIAVAEQTFGG-DARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLEVAGRGFSFGK 119

Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM   SG SA+  + QA  +++  +L   GEE+Q+ RIA AIV RR   P   T
Sbjct: 120 DGPLDMRMDPDSGQSAAQWLAQATDREIADVLWTYGEERQSRRIARAIVARRAEQPLLRT 179

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ LI   +    +++ HPATRSFQA+RI++N E+++L  GL +A  ALK GG L V+
Sbjct: 180 AQLADLIASVMPRG-DSKTHPATRSFQAIRIYINRELDDLETGLDAALAALKPGGRLAVI 238

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDR+VK+F A  +    + R +  +       Q ++   +     ++  N R+RS
Sbjct: 239 SFHSLEDRIVKQFMARYAKAPPSNRRLPEAQPFVPTLQLVS-GAIKADDAELNVNPRARS 297

Query: 309 AKLRAGMR 316
           A LR   +
Sbjct: 298 AVLRVAEK 305


>gi|304386665|ref|ZP_07368947.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis ATCC
           13091]
 gi|304339250|gb|EFM05328.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis ATCC
           13091]
          Length = 328

 Score =  357 bits (917), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 116/318 (36%), Positives = 172/318 (54%), Gaps = 13/318 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           MS A  +    H+ VLL + +  L      V +D TFG GG+SR           +I  D
Sbjct: 1   MSGAESY---RHITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFD 57

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGD 122
           +DP A++  +E +    ++  +    F+  Q  +   G   VDG +FDLG+SS QID G 
Sbjct: 58  KDPQAIAVAEE-LARSDKRVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGS 116

Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF+   PLDMRM  + G+SA++ +  A+ +DL  ++   GEE+ + +IA AIV +R 
Sbjct: 117 RGFSFRFDAPLDMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRA 176

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            +P  TT+ L+ ++ + V   +  +   ATR+FQA+RIF+N E+EE+   L      LK 
Sbjct: 177 ESPIDTTRKLAQIVAQNVRTRERGQ-DSATRTFQAIRIFINRELEEVGAVLPQVMCRLKE 235

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDV 300
           GG L V++FHSLEDR+VK+F    S      R      A  P     I  + + P + ++
Sbjct: 236 GGRLAVIAFHSLEDRIVKQFVKKYSQHAPLPRWAAVREADLPEPPLKIVGRALKPGEAEI 295

Query: 301 AFNRRSRSAKLRAGMRTV 318
           A N R+RSA LR   RT 
Sbjct: 296 AANPRARSAVLRVAERTA 313


>gi|260576880|ref|ZP_05844863.1| S-adenosyl-methyltransferase MraW [Rhodobacter sp. SW2]
 gi|259020917|gb|EEW24230.1| S-adenosyl-methyltransferase MraW [Rhodobacter sp. SW2]
          Length = 334

 Score =  357 bits (917), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 145/319 (45%), Positives = 190/319 (59%), Gaps = 5/319 (1%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCG 74
               HVPVLL  ++A + P    V LD TFGAGGY+R     G+  VI +DRDP A+   
Sbjct: 7   PAAPHVPVLLRPLLAAVAPVQ-GVWLDGTFGAGGYARGLLAAGAAKVIGIDRDPLALQMA 65

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
                +Y ++  L    FS+L D +  + +DG+V DLGVSSMQ+D  +RGFSF + GPLD
Sbjct: 66  AAWAGEYGDRLRLVAGNFSEL-DVLAGEPLDGIVLDLGVSSMQLDLPERGFSFLRDGPLD 124

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRMS  G SA+D+VN      L  IL   GEE+ + RIA AIV  R  AP  TT  L+ +
Sbjct: 125 MRMSQQGDSAADIVNATEEGALADILYTYGEERASRRIAKAIVAARAIAPITTTLRLAEI 184

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           +   +   K  + H ATRSFQA+RI VN E  EL +GL +AE+ALK GGLL VV+FHSLE
Sbjct: 185 VAGCLPRPKPGQSHAATRSFQAIRIAVNTEFSELVEGLAAAERALKPGGLLAVVTFHSLE 244

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           DR+VK+FF  RSG         P+ A     F  +T++ V P   ++A N R+RSAKLR 
Sbjct: 245 DRIVKRFFQLRSGNEANANRYAPAKAEDAPRFDLVTRRAVAPDDAELAENPRARSAKLRV 304

Query: 314 GMRTVERSI-EDDSFVHLP 331
           G RT   +   D + + +P
Sbjct: 305 GRRTEAPAGTSDPAALGVP 323


>gi|149190159|ref|ZP_01868435.1| S-adenosyl-methyltransferase MraW [Vibrio shilonii AK1]
 gi|148836048|gb|EDL53009.1| S-adenosyl-methyltransferase MraW [Vibrio shilonii AK1]
          Length = 316

 Score =  357 bits (917), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 118/323 (36%), Positives = 165/323 (51%), Gaps = 23/323 (7%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           MS +       H+ VLL + I  L   P  + +D TFG GG+SR           + ++D
Sbjct: 1   MSESFQ-----HISVLLHESIDGLAIKPDGIYIDGTFGRGGHSRQILSQLGENGRLYSID 55

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCG 121
           RDP A+    +       +F++    FS + +Y         VDGV+ DLGVSS Q+D  
Sbjct: 56  RDPQAIEEAGKI---DDPRFTIIHGPFSGMAEYAERYDLVGKVDGVLLDLGVSSPQLDDA 112

Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF K GPLDMRM   SG+  S+ + QA + D+T ++   GE+K A RIA AIV  R
Sbjct: 113 ERGFSFMKDGPLDMRMDPTSGMPVSEWLAQAELDDITWVIREFGEDKHARRIAKAIVAHR 172

Query: 181 Q---SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
           +     P   T  L+ LI      S   + HPATRSFQA RI++N+E+EE+   L+ A  
Sbjct: 173 EDEEKEPLTRTGQLAKLISDAAPKSFKEKKHPATRSFQAFRIYINSELEEIDTALKGAAS 232

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVV 293
            L   G L V+SFHSLEDR+VK+F    S        +  +                K +
Sbjct: 233 ILAPEGRLSVISFHSLEDRMVKRFMRKESRGPQVPHGIPMTEDQIRALGSANLKTIGKAL 292

Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316
            P+ ++V  N RSRS+ LR   +
Sbjct: 293 KPSDQEVEMNTRSRSSVLRVAEK 315


>gi|261391925|emb|CAX49387.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis 8013]
          Length = 328

 Score =  357 bits (917), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 117/318 (36%), Positives = 173/318 (54%), Gaps = 13/318 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           MS A  +    H+ VLL + +  L      V +D TFG GG+SR           +I  D
Sbjct: 1   MSGAESY---RHITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFD 57

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGD 122
           +DP A++  +E +    ++  +    F+  Q  +   G   VDG +FDLG+SS QID G 
Sbjct: 58  KDPQAIAVAEE-LARSDKRVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGS 116

Query: 123 RGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF+   PLDMRM    G+SA++ +  A+ +DL  ++   GEE+ + +IA AIV +R 
Sbjct: 117 RGFSFRFDAPLDMRMDTMRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRA 176

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            +P  TT+ L+ ++ + V   +  +  PATR+FQA+RIF+N E+EE+   L      LK 
Sbjct: 177 ESPIDTTRKLAQIVAQNVRTRERGQ-DPATRTFQAVRIFINRELEEVGAVLPQVMCRLKE 235

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDV 300
           GG L V++FHSLEDR+VK+F    S      R      A  P +   I  + + P + ++
Sbjct: 236 GGRLAVIAFHSLEDRIVKQFVKKYSQHAPLPRWAAVREADLPELPLKIVGRALKPGEAEI 295

Query: 301 AFNRRSRSAKLRAGMRTV 318
           A N R+RSA LR   RT 
Sbjct: 296 AANPRARSAVLRVAERTA 313


>gi|170720122|ref|YP_001747810.1| S-adenosyl-methyltransferase MraW [Pseudomonas putida W619]
 gi|262825121|sp|B1J1Y2|RSMH_PSEPW RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|169758125|gb|ACA71441.1| S-adenosyl-methyltransferase MraW [Pseudomonas putida W619]
          Length = 315

 Score =  357 bits (917), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 114/308 (37%), Positives = 175/308 (56%), Gaps = 12/308 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
           +H+ VLL++ +  L        LD TFG GG+SR           ++  D+DP A++ GQ
Sbjct: 8   NHITVLLDEAVEALALRADGCYLDGTFGRGGHSRLILSKLGPQGRLLGFDKDPQAIATGQ 67

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
             +     +F + Q +F++L   V ++G    V G++ DLGVSS Q+D  +RGFSF   G
Sbjct: 68  A-LAAEDGRFVIVQRSFAELGAEVAERGLAGKVSGILLDLGVSSPQLDDPERGFSFLNDG 126

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+   GISA++ +  A V+++ R+    GEE+ A R+A A+V+RR+  PF  T D
Sbjct: 127 PLDMRMNPDQGISAAEFIATAPVEEIARVFKEYGEERFAGRMARAVVERREKQPFTRTAD 186

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ +++      +  + +PATR+FQ LRI VNNE+ +L  GL +A  AL+ GG L V+SF
Sbjct: 187 LAEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLAVISF 245

Query: 251 HSLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+VK F      G+   +   +P        +  +  K    ++ ++  N RSRS
Sbjct: 246 HSLEDRIVKLFMRKLVKGEADNLPRNLPVQHKVFEPKIRLIGKAQFASEAELKANPRSRS 305

Query: 309 AKLRAGMR 316
           A +R   +
Sbjct: 306 AVMRVAEK 313


>gi|325275020|ref|ZP_08141013.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas sp. TJI-51]
 gi|324099848|gb|EGB97701.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas sp. TJI-51]
          Length = 315

 Score =  357 bits (917), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 114/308 (37%), Positives = 175/308 (56%), Gaps = 12/308 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
           +H+ VLL++ +  L        LD TFG GG+SR           ++  D+DP A++ GQ
Sbjct: 8   NHITVLLDEAVEALALRADGCYLDGTFGRGGHSRLILSKLGPQGRLLGFDKDPQAIATGQ 67

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
             +     +F + Q +F++L   V ++G    V GV+ DLGVSS Q+D  +RGFSF   G
Sbjct: 68  A-LAAEDGRFVIVQRSFAELGAEVAERGLHGKVSGVLLDLGVSSPQLDDPERGFSFLNDG 126

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+   G+SA++ +  A V+++ R+    GEE+ A R+A A+V+RR+  PF  T D
Sbjct: 127 PLDMRMNPDQGVSAAEFIATAPVEEIARVFKEYGEERFAGRMARAVVERREKQPFTRTAD 186

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ +++      +  + +PATR+FQ LRI VNNE+ +L  GL +A  AL+ GG L V+SF
Sbjct: 187 LAEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLAVISF 245

Query: 251 HSLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQ-SITKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+VK F      G+   +   +P        +  +  K    ++ ++  N RSRS
Sbjct: 246 HSLEDRIVKLFMRKLVKGEADNLPRNLPVQHKVFEPKVKLIGKAQFASEAELKANPRSRS 305

Query: 309 AKLRAGMR 316
           A +R   +
Sbjct: 306 AVMRVAEK 313


>gi|313665282|ref|YP_004047153.1| S-adenosyl-methyltransferase MraW [Mycoplasma leachii PG50]
 gi|312950000|gb|ADR24596.1| S-adenosyl-methyltransferase MraW [Mycoplasma leachii PG50]
          Length = 309

 Score =  357 bits (917), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 105/310 (33%), Positives = 162/310 (52%), Gaps = 14/310 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
            H+PVLL++ I  LN  P  + +D T G  G++    +  S    + A+D+D  A+   +
Sbjct: 3   KHIPVLLDESIKYLNIKPNGIYVDCTLGRAGHASEILQRLSQNGFLYAIDQDKVAIDQAK 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E +      F L Q  FS L   +       VDG+++DLGVSS Q+D G RGFS++  GP
Sbjct: 63  EKLEKISNNFFLIQGNFSNLSALLAINHVFNVDGILYDLGVSSPQLDIGSRGFSYKIDGP 122

Query: 133 LDMRMS--CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           LDMRM    + ++A  +VNQ     +  IL   GEE  A  IA  IV  R   P  +T  
Sbjct: 123 LDMRMDITNNSLTADIIVNQYPETQIADILFKYGEESFAKNIAKKIVLSR---PINSTLK 179

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I+  +       + HPA ++FQALRIF+NNE+  L   L+ A + L + G + V++
Sbjct: 180 LVEVIKSALPQKVLKQKKHPAKKTFQALRIFINNELIVLENSLKQALELLNSKGRICVIT 239

Query: 250 FHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           FHSLE+++VK  F + +   +     ++       + F+ + KK + P+  ++  N RS 
Sbjct: 240 FHSLEEKIVKNIFNNSTNYFQEQLFNNLPIKANLNSQFKLVIKKPIKPSLLELENNYRSH 299

Query: 308 SAKLRAGMRT 317
           SAKL    + 
Sbjct: 300 SAKLWVIEKN 309


>gi|317493287|ref|ZP_07951709.1| S-adenosyl-methyltransferase MraW [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316918680|gb|EFV40017.1| S-adenosyl-methyltransferase MraW [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 314

 Score =  357 bits (917), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 120/320 (37%), Positives = 183/320 (57%), Gaps = 19/320 (5%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPF 69
           +      H  VLL++ +  LN     + +D TFG GG+SR           ++A+DRDP 
Sbjct: 1   MSEENYQHKTVLLDEAVNGLNLRSNGIYIDGTFGRGGHSRLILSQLGPEGRLLAIDRDPQ 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGF 125
           A++   E       +FS+    FS +  YV + G    ++GV+ DLGVSS Q+D  +RGF
Sbjct: 61  AIAAAAEI---TDPRFSIIHGPFSDMATYVRELGLEGQINGVLLDLGVSSPQLDDAERGF 117

Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF + GPLDMRM  + G+SA++ + +A  +D+  +L   GEE+ A RIA AIV+R +  P
Sbjct: 118 SFMRDGPLDMRMDPTRGLSAAEWLMKAEEEDIAWVLKTFGEERFAKRIARAIVERNRLEP 177

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
              T +L++LI     F + ++ HPATRSFQA+RI++N+E+EE+ + L  A + L   G 
Sbjct: 178 MTRTHELATLIANASPFREKHK-HPATRSFQAIRIYINSELEEIERALNGALEILSPEGR 236

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQED 299
           L V+SFHSLEDR+VK+F    S        +  + A          +++ K  + P+ ++
Sbjct: 237 LSVISFHSLEDRIVKQFIRHHSRGPQVPAGIPLTEAQLRSQGGRKLKALGK--MKPSSDE 294

Query: 300 VAFNRRSRSAKLRAGMRTVE 319
           V+ N R+RS+ LR   RTVE
Sbjct: 295 VSANPRARSSVLRFAERTVE 314


>gi|238752424|ref|ZP_04613901.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia
           rohdei ATCC 43380]
 gi|238709357|gb|EEQ01598.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia
           rohdei ATCC 43380]
          Length = 320

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 122/314 (38%), Positives = 177/314 (56%), Gaps = 19/314 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H  VLL++ +  LN     + +D TFG GG+SR           +IA+DRDP AV   +
Sbjct: 13  KHTSVLLDEAVNGLNIRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDRDPLAVEAAK 72

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +FS+    FS+L  YV +      +DGV+ DLGVSS Q+D  +RGFSF + G
Sbjct: 73  SI---TDPRFSIVHGPFSELAHYVRELDLVGRIDGVLLDLGVSSPQLDDPERGFSFMRDG 129

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + G+SA+D + +A+ +D+  +L   GEE+ A R+A AIV+R  + P   T++
Sbjct: 130 PLDMRMDPTRGLSAADWLMKASAEDIAWVLKTFGEERFAKRLARAIVERNLTQPMTRTKE 189

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ LI     F ++   HPATRSFQA+RI++N+E+EE+ + L  A + L   G L V+SF
Sbjct: 190 LADLIANASPF-RDKHKHPATRSFQAIRIYINSELEEIERALDGALEVLAPEGRLSVISF 248

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNRR 305
           HSLEDR+VK F    S        +  + A          +S+ K  ++P   +VA N R
Sbjct: 249 HSLEDRIVKNFIRHHSRGPQVPAGLPLTEAQLRSMGGRTLKSVGK--MMPPDAEVAENPR 306

Query: 306 SRSAKLRAGMRTVE 319
           +RS+ LR   R  E
Sbjct: 307 ARSSVLRFAERIKE 320


>gi|270263951|ref|ZP_06192219.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Serratia
           odorifera 4Rx13]
 gi|270042144|gb|EFA15240.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Serratia
           odorifera 4Rx13]
          Length = 313

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 119/309 (38%), Positives = 176/309 (56%), Gaps = 15/309 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H  VLL++ +  LN     + +D TFG GG+SR           ++A+DRDP A++  +
Sbjct: 6   KHTTVLLDEAVNGLNIRSNGIYIDGTFGRGGHSRLILSQLGPEGRLLAIDRDPQAIAAAK 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +F++    FS L  YV ++     +DGV+ DLGVSS Q+D  +RGFSF + G
Sbjct: 66  SI---EDPRFTIVHGPFSDLSHYVRERELVGQIDGVLLDLGVSSPQLDDAERGFSFMRDG 122

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  S G SAS+ + +A   D+  +L   GEE+ A RIA AIV+R +  P   T++
Sbjct: 123 PLDMRMDPSSGQSASEWLLKAEADDIAWVLKTFGEERFAKRIARAIVERNRVEPMTRTKE 182

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ LI     F + ++ HPATRSFQA+RI++N+E+EE+ + L  A + L   G L ++SF
Sbjct: 183 LADLIANASPFREKHK-HPATRSFQAIRIYINSELEEIERALDGALEVLAPQGRLSIISF 241

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNRRSR 307
           HSLEDR+VK+F    S        +  +          T K +   +P+Q++VA N R+R
Sbjct: 242 HSLEDRIVKRFMRHHSRGAQVPAGLPLTEEQLRGMGGRTLKALGKMMPSQDEVAENPRAR 301

Query: 308 SAKLRAGMR 316
           S+ LR   R
Sbjct: 302 SSVLRIAER 310


>gi|254441632|ref|ZP_05055125.1| S-adenosyl-methyltransferase MraW [Octadecabacter antarcticus 307]
 gi|198251710|gb|EDY76025.1| S-adenosyl-methyltransferase MraW [Octadecabacter antarcticus 307]
          Length = 325

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 146/325 (44%), Positives = 194/325 (59%), Gaps = 8/325 (2%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSC 73
                H+PVL+  +IA  +P      LDATFGAGGY++     G++ VI +DRDP     
Sbjct: 5   DDTPPHIPVLIGPLIAACSPIS-GTWLDATFGAGGYTQRLLAAGADKVIGVDRDPAVFKM 63

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            Q          +L + TFS L     D  +DG+V DLGVSSMQID  +RGFSF + GPL
Sbjct: 64  AQ--WAADNPAITLVEDTFSNLDTIASD--LDGIVLDLGVSSMQIDQAERGFSFMRDGPL 119

Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           DMRM   G SA+D+VN+A+  DL  IL I GEE+ + RIA  IV++R   P  TT  L+ 
Sbjct: 120 DMRMGQEGQSAADIVNEADETDLADILYIYGEERASRRIARKIVEQRDREPITTTLRLAK 179

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           LI+  +  SK  + HPATRSFQA+RI VN+E  +LA+GL +AE+ALK GG L +V+FHS+
Sbjct: 180 LIEGCLPRSKQGQSHPATRSFQAIRIAVNDEYGQLAEGLEAAERALKPGGYLAIVTFHSV 239

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPS-NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           EDR+VK+F   R G +       P        F+ ITKK     +++VA N RSRSAKLR
Sbjct: 240 EDRMVKRFLQQRGGGMGNANRYSPVLETEKPSFEIITKKAKAADEDEVAQNPRSRSAKLR 299

Query: 313 AGMRTVERSIE-DDSFVHLPRLPTL 336
              RT   +   D S + +P+L  +
Sbjct: 300 VARRTDAPAGALDRSKIGMPQLKAI 324


>gi|238761549|ref|ZP_04622524.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia
           kristensenii ATCC 33638]
 gi|238700063|gb|EEP92805.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia
           kristensenii ATCC 33638]
          Length = 320

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 120/312 (38%), Positives = 173/312 (55%), Gaps = 15/312 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H  VLL++ +  LN     + +D TFG GG+SR           +IA+DRDP A+   +
Sbjct: 13  KHTSVLLDEAVNGLNIRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDRDPQAIEAAK 72

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +FS+    FS L  YV +      ++GV+ DLGVSS Q+D  +RGFSF + G
Sbjct: 73  SI---TDPRFSIVHGPFSDLAHYVRELDLVGRINGVLLDLGVSSPQLDDPERGFSFMRDG 129

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + G+SA+D + +A   D+  +L   GEE+ A R+A AIV+R  + P   T++
Sbjct: 130 PLDMRMDPTRGLSAADWLMKAGADDIAWVLKTFGEERFAKRLAKAIVERNLTQPMTRTKE 189

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ LI     F + ++ HPATRSFQA+RI++N+E+EE+ + L  A + L   G L V+SF
Sbjct: 190 LADLIANASPFREKHK-HPATRSFQAIRIYINSELEEIERALDGALEVLAPEGRLSVISF 248

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV---VVPTQEDVAFNRRSR 307
           HSLEDR+VK F    S        +  + A        T K    ++P   +VA N R+R
Sbjct: 249 HSLEDRIVKNFIRHHSRGPQVPAGLPLTEAQLRSMGGRTLKSAGKMMPPDAEVAENPRAR 308

Query: 308 SAKLRAGMRTVE 319
           S+ LR   R  E
Sbjct: 309 SSVLRFAERIKE 320


>gi|307564714|ref|ZP_07627244.1| S-adenosyl-methyltransferase MraW [Prevotella amnii CRIS 21A-A]
 gi|307346642|gb|EFN91949.1| S-adenosyl-methyltransferase MraW [Prevotella amnii CRIS 21A-A]
          Length = 318

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 118/312 (37%), Positives = 174/312 (55%), Gaps = 15/312 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFA---VSC 73
           HVPVLL++ +  LN   G + +D TFG GG+SR      S   ++ + D+D  A   +  
Sbjct: 9   HVPVLLKESVDGLNIRKGGIYVDVTFGGGGHSREILSHLSGDAHLYSFDQDLDAEQNIKY 68

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKS 130
             E+ ++  ++F+  ++ F  L++++   GVD   G++ DLGVSS   D  +RGFSF+  
Sbjct: 69  LTESDKELSKKFTFVRSNFRYLKNWMRYYGVDKIDGLIADLGVSSHHFDDENRGFSFRFD 128

Query: 131 -GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM+  SG  A DV+N    +DL R+  + GE KQ+ RIA AIVK R +   +TT
Sbjct: 129 DAPLDMRMNKESGKQAFDVLNDYKEEDLARLFYVYGELKQSKRIAAAIVKGRANKAIRTT 188

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            D   ++    +F +        + FQALRI VN E++ L + L SA + L  GG L V+
Sbjct: 189 TDFLKIVNP--FFMRVREKKDMAKLFQALRIEVNQEMQALTKMLTSAIELLAPGGRLSVI 246

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           ++HSLEDRLVK F  S + +    +        P  F+ +  KV++ T E++  N RSRS
Sbjct: 247 TYHSLEDRLVKNFMKSGNAEGKISQDFFGRIKTP--FKLVNNKVIIATDEEIERNPRSRS 304

Query: 309 AKLRAGMRTVER 320
           AKLR   R  E 
Sbjct: 305 AKLRIAERKHEE 316


>gi|210634276|ref|ZP_03298049.1| hypothetical protein COLSTE_01971 [Collinsella stercoris DSM 13279]
 gi|210158878|gb|EEA89849.1| hypothetical protein COLSTE_01971 [Collinsella stercoris DSM 13279]
          Length = 306

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 112/305 (36%), Positives = 167/305 (54%), Gaps = 12/305 (3%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETM-- 78
           +L++V+  L  + G V  D T G  G+S            ++ +D+D  A+    + +  
Sbjct: 1   MLQEVLEQLQLSAGSVACDCTLGGAGHSVRMAAQVGTEGLLLGIDQDDMALEAAGKRLDA 60

Query: 79  RDYKEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
                   L +  F  L + +      GVDG +FDLGVSS Q+D   RGFS+ +  PLDM
Sbjct: 61  EAPGTPHKLLKGNFGDLDELLCSAQVPGVDGFLFDLGVSSPQLDIPGRGFSYNEDAPLDM 120

Query: 136 RMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           RM    + ++A++V+N     DL RIL I GEEK A +IA  IV+RRQ AP  TT D   
Sbjct: 121 RMDPGTNTLNAAEVLNTYTEADLARILRIYGEEKFARQIAREIVRRRQVAPLATTGDFVD 180

Query: 194 LIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +I+  +  + + +  HPA RSFQA+RI VN+E++ L +GL +A + L   G + V+S+HS
Sbjct: 181 VIKAGIPAAARRHGGHPAKRSFQAIRIEVNHELDVLERGLEAAVRWLNPSGRVCVISYHS 240

Query: 253 LEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK+ F   S          +    +  + +  T+K +V T E+VA N R+RSAK+
Sbjct: 241 LEDRIVKRLFQELSQGCTCPPDIPVCVCGNVPIVKVTTRKPLVATAEEVARNPRARSAKI 300

Query: 312 RAGMR 316
           R   R
Sbjct: 301 RCAER 305


>gi|323497887|ref|ZP_08102896.1| 16S rRNA m(4)C1402 methyltranserfase [Vibrio sinaloensis DSM 21326]
 gi|323316932|gb|EGA69934.1| 16S rRNA m(4)C1402 methyltranserfase [Vibrio sinaloensis DSM 21326]
          Length = 316

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 125/325 (38%), Positives = 177/325 (54%), Gaps = 27/325 (8%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           M+ A       H+ VLL + I  L   P  + +D TFG GG+SR+          + ++D
Sbjct: 1   MTEAF-----KHISVLLHESIDGLAIKPDGIYIDGTFGRGGHSRTILSKLGENGRLYSID 55

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCG 121
           RDP A++   +       +F++    FS + DY  D      VDGV+ DLGVSS Q+D  
Sbjct: 56  RDPQAIAEANKI---DDPRFTIIHGPFSGMADYAKDYDLVGKVDGVLLDLGVSSPQLDDA 112

Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF K GPLDMRM   SGI  S  + +A++ D+T ++   GE+K A RIA AIV  R
Sbjct: 113 ERGFSFMKDGPLDMRMDPTSGIPVSQWLLEADLDDITWVIREFGEDKHARRIAKAIVAYR 172

Query: 181 QSA---PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
           ++    P   T  L+ LI +    S   + HPATR+FQA RI++N+E+EE+   L+ A  
Sbjct: 173 ENEENEPLTRTGQLAKLISEAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAAS 232

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHP------AVFQSITKK 291
            L   G L V+SFHSLEDR+VK+F    S K   V H IP           A  + +  K
Sbjct: 233 ILAPEGRLSVISFHSLEDRMVKRFIRKES-KGPEVPHGIPLTEDQIKAMGSANLKPV-GK 290

Query: 292 VVVPTQEDVAFNRRSRSAKLRAGMR 316
            + P++++V  N RSRS+ LR   +
Sbjct: 291 AIKPSKQEVEMNARSRSSVLRLAEK 315


>gi|148556856|ref|YP_001264438.1| S-adenosyl-methyltransferase MraW [Sphingomonas wittichii RW1]
 gi|262826617|sp|A5VDD4|RSMH_SPHWW RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|148502046|gb|ABQ70300.1| S-adenosyl-methyltransferase MraW [Sphingomonas wittichii RW1]
          Length = 322

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 137/314 (43%), Positives = 195/314 (62%), Gaps = 10/314 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQ 75
           T   HVPVL+++VIA L PA G+  +D TFGAGGY+R+  + G+ V A DRDP A++ G+
Sbjct: 3   TTAPHVPVLIDEVIAGLEPATGETHVDGTFGAGGYTRALLQAGARVYAFDRDPDAIAEGR 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                   +  L    FS++ + + ++G   VDGV  D+GVSSMQ+D  DRGFSFQ  GP
Sbjct: 63  ALEDGQDGRLILVPERFSRMAEALNERGIDQVDGVTLDIGVSSMQLDRADRGFSFQADGP 122

Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           LDMRM  SG+SA+D VN A+  ++  +L  LGEE +A R+A AIV+ R   P   T +L+
Sbjct: 123 LDMRMEKSGMSAADFVNTADEAEIADVLHDLGEEPRARRVARAIVQAR---PITRTSELA 179

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            ++++ +    + +  PATR+FQA+RI +N E++EL QGL +AE+ L+ GG L VVSFHS
Sbjct: 180 EVVRRALGHKPHEKKDPATRTFQAIRIHLNAELDELEQGLAAAERVLRPGGRLAVVSFHS 239

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIP---SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           +EDR+VK+F   RSG   A    +P   +      F+++  K V   + ++A N RSRSA
Sbjct: 240 IEDRIVKRFLRDRSGATPAGSRHLPDARAGGPRPSFEAVA-KPVRAGEAELARNPRSRSA 298

Query: 310 KLRAGMRTVERSIE 323
            LR   RT      
Sbjct: 299 TLRVARRTAAAPWG 312


>gi|170016882|ref|YP_001727801.1| S-adenosyl-methyltransferase MraW [Leuconostoc citreum KM20]
 gi|263456317|sp|B1MXV5|RSMH_LEUCK RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|169803739|gb|ACA82357.1| S-adenosyl-methyltransferase MraW [Leuconostoc citreum KM20]
          Length = 313

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 103/308 (33%), Positives = 162/308 (52%), Gaps = 10/308 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76
           +HV VLL + +ALL   P    +DAT G GG++    K      + + D+D  A+   Q 
Sbjct: 5   EHVTVLLHEAVALLAINPTGTYVDATLGGGGHTGEILKQLTTGKLYSFDQDDTAIKYNQT 64

Query: 77  TMRD--YKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
              D     +  L    F QL+  + ++    VDG+V+DLGVSS+Q D G RGFS+    
Sbjct: 65  RYADEIAAGKLILIHQNFRQLKVALAEQHVTAVDGIVYDLGVSSVQFDDGQRGFSYNYDA 124

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM     ++A  +VN     D+ R+L   GE++   ++A  I + R   P  TT +
Sbjct: 125 ELDMRMDQRQTLTAKTIVNDWPFNDILRVLSRYGEDRFPKQVARKIEQHRDKGPINTTFE 184

Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I++ +   ++    HPA R+FQALR+ VN+E+  L   L  A + L   G + V++
Sbjct: 185 LVDIIKEAIPAPARRKGGHPAKRTFQALRVAVNDELGALEDSLTQALELLAPSGRISVIT 244

Query: 250 FHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           F SLEDRLVK+ F  ++    +     +        ++ +T+K ++P++ ++  N RS S
Sbjct: 245 FQSLEDRLVKQMFREKTSMPDLPAGLPVLPGQFEPDYKLLTRKPILPSETEMTDNHRSES 304

Query: 309 AKLRAGMR 316
           AKLR   R
Sbjct: 305 AKLRGIER 312


>gi|329122136|ref|ZP_08250744.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Dialister
           micraerophilus DSM 19965]
 gi|327466943|gb|EGF12459.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Dialister
           micraerophilus DSM 19965]
          Length = 310

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 101/308 (32%), Positives = 169/308 (54%), Gaps = 10/308 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
            HV VL  ++I+ +      V  D T G  G+     +    G+ +I +D+D  A+   +
Sbjct: 4   KHVTVLRREMISAILTDKNGVYADCTLGGAGHLSLLSEKVENGALLIGIDQDLDALKAAE 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             M+D     +   + FS +++ + +K    ++G +FDLGVSS Q+D  +RGFS+   G 
Sbjct: 64  LRMKDCTCNLNFVHSNFSNIKNILSEKNLNQINGFIFDLGVSSYQLDEANRGFSYMHEGR 123

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+  S ++A DVVN+ + + +  I+   GEE+ A RIA  IV  R++   +TT +L
Sbjct: 124 LDMRMNQNSELTAHDVVNKYSEEKIAFIIKEYGEERWAKRIAEFIVDYRKNKIIETTGEL 183

Query: 192 SSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
            S+I+  +   ++ N  HPA R+FQA+RI VNNE+  +   +      L +GG + +++F
Sbjct: 184 VSIIKAAIPLGARKNGPHPAKRTFQAIRIEVNNELGIIESTINDCVDCLVSGGRIGIITF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK+ F + + + +      +    H    + +    + PT E++A N R+RSA
Sbjct: 244 HSLEDRIVKRTFKNLAKQCICPPEFPLCVCNHQRKIKLLGNG-IRPTDEEIAENPRARSA 302

Query: 310 KLRAGMRT 317
            LR   + 
Sbjct: 303 ILRVAEKI 310


>gi|281424950|ref|ZP_06255863.1| S-adenosyl-methyltransferase MraW [Prevotella oris F0302]
 gi|281400794|gb|EFB31625.1| S-adenosyl-methyltransferase MraW [Prevotella oris F0302]
          Length = 315

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 110/310 (35%), Positives = 167/310 (53%), Gaps = 17/310 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           HVPVLL+  +  LN   G + +D TFG GG+SR         +++ + D+D  A      
Sbjct: 9   HVPVLLKPSVDGLNIQSGGIYVDVTFGGGGHSREILSRLDNQAHLYSFDQDADAEQNVMH 68

Query: 77  TMRD------YKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSF 127
                        +F+  ++ F  L++++   GV   DG++ DLGVSS   D   RGFSF
Sbjct: 69  REGSTEKRFVDDARFTFVRSNFRYLKNWMRYYGVEKIDGLLADLGVSSHHFDDESRGFSF 128

Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           +   PLDMRM+  +G++A+DVVN  + + L  +  + GE KQ+ RIA A+VK R      
Sbjct: 129 RFDAPLDMRMNKRAGLTAADVVNDYDEEALANLFYLYGELKQSRRIAAALVKARAQQRIA 188

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           TTQD     +    F +        + FQALRI VN+E++ L + L+SA + L++GG L 
Sbjct: 189 TTQDFLKATEPL--FKREREKKDMAKLFQALRIEVNHEMDALKEMLQSATELLRSGGRLS 246

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+++HSLEDR+VK    + + +   V+        P  F  +  KV+VP+ ++   N RS
Sbjct: 247 VITYHSLEDRIVKNMMKAGNAEGKKVQDFYGRIETP--FNLVNNKVIVPSADEQQENPRS 304

Query: 307 RSAKLRAGMR 316
           RSAKLR   +
Sbjct: 305 RSAKLRIAEK 314


>gi|325925694|ref|ZP_08187072.1| S-adenosyl-methyltransferase MraW [Xanthomonas perforans 91-118]
 gi|325543910|gb|EGD15315.1| S-adenosyl-methyltransferase MraW [Xanthomonas perforans 91-118]
          Length = 347

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 117/309 (37%), Positives = 171/309 (55%), Gaps = 7/309 (2%)

Query: 12  AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDP 68
            +      HVPVL  +V+  L        LD TFG GG++R   +    G  ++ +D+DP
Sbjct: 10  PVSQPPAAHVPVLYTQVLDGLQVTENGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDP 69

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
            A++   E       + S+ + +F+ L   V    VDG++ DLGVSS Q+D   RGFSF 
Sbjct: 70  EAIAVA-EHSFGGDARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLDVAGRGFSFG 128

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           K GPLDMRM   +G SA+  + QA+ +++  +L   GEE+Q+ RIA AIV RR   P   
Sbjct: 129 KDGPLDMRMDPDNGQSAAQWLAQASEREIADVLWTYGEERQSRRIARAIVARRAEQPLLR 188

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T  L+ LI   +    +++ HPATRSFQA+RI +N E+ +L  GL +A  ALK GG L V
Sbjct: 189 TAQLADLIASVMPRG-DSKTHPATRSFQAIRIHINRELADLEAGLDAALDALKPGGRLAV 247

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +SFHSLEDR+VK+F A  +    + R +  +       Q ++   +     ++  N R+R
Sbjct: 248 ISFHSLEDRIVKQFMARYAKAPPSNRRLPEAQPFVPTLQLVS-GAIKADDAELIVNPRAR 306

Query: 308 SAKLRAGMR 316
           SA LR   +
Sbjct: 307 SAVLRVAEK 315


>gi|320530962|ref|ZP_08031995.1| S-adenosyl-methyltransferase MraW [Selenomonas artemidis F0399]
 gi|320136827|gb|EFW28776.1| S-adenosyl-methyltransferase MraW [Selenomonas artemidis F0399]
          Length = 310

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 107/307 (34%), Positives = 155/307 (50%), Gaps = 10/307 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQ 75
            HV VL  + +A L+  P    +D T GA G++            +I +D+D  A++  Q
Sbjct: 4   HHVSVLPAETVAALSVVPEGTYVDCTLGAAGHAGRIAAQLSPAGRLIGIDQDETAIAAAQ 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +     + SL    F  L   +  +GV   DG++FDLGVSS QID   RGFS+ +  P
Sbjct: 64  VRLASAACRVSLVHDNFRNLTAILTAEGVSAVDGILFDLGVSSPQIDTAARGFSYMQDAP 123

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM   +  SA  VVN+ +   LT +    GEE+ A RIA  I   R+  P +TT +L
Sbjct: 124 LDMRMDRRAARSAYTVVNEYSAARLTELFYDYGEERWAKRIAAFIEAARKERPIETTGEL 183

Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I + V    +    HPA R FQA+RI VN E+  L   + +A   LK GG + V++F
Sbjct: 184 VEIIDRAVPKKVRAKGGHPAKRVFQAIRIEVNEELTILPDAVTAAVHTLKPGGRIAVITF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK+     +   +   H  +    H    + I  K    +  + A N R++SA
Sbjct: 244 HSLEDRIVKRTMQQLARGCICPPHTPVCICGHTPELRLI-GKAQTASLAECAANARAKSA 302

Query: 310 KLRAGMR 316
           KLR   +
Sbjct: 303 KLRVAEK 309


>gi|260775374|ref|ZP_05884271.1| S-adenosyl-methyltransferase MraW [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260608555|gb|EEX34720.1| S-adenosyl-methyltransferase MraW [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 316

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 120/313 (38%), Positives = 168/313 (53%), Gaps = 18/313 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H+ VLL + I  L   P    +D TFG GG+SR           + ++DRDP A++  Q
Sbjct: 6   KHISVLLHESIDGLAIKPDGTYIDGTFGRGGHSRQILSQLGEQGRLFSIDRDPQAIAEAQ 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +F++    FS +  Y  ++G    VDGV+ DLGVSS Q+D  +RGFSF K G
Sbjct: 66  TI---DDPRFTIIHGPFSGMAKYAEERGLVGQVDGVLLDLGVSSPQLDDAERGFSFMKDG 122

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---PFQT 187
           PLDMRM   SGI  S  + +A++ D+T ++   GE+K A RIA AIV  R++    P   
Sbjct: 123 PLDMRMDPTSGIPVSQWLMEADLDDITWVIREFGEDKHARRIAKAIVAYRENEENEPLTR 182

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T  L+ LI      S   + HPATRSFQA RI++N+E+EE+   L+ A   L   G L V
Sbjct: 183 TGQLAKLISDAAPKSFKEKKHPATRSFQAFRIYINSELEEIDTALKGAASILAPEGRLSV 242

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT----KKVVVPTQEDVAFN 303
           +SFHSLEDR+VK+F    S        +  + A      S       K + P++++V  N
Sbjct: 243 ISFHSLEDRMVKRFIRKESKGPEVPHGIPMTEAQIKALGSANLKPIGKAIKPSKQEVDIN 302

Query: 304 RRSRSAKLRAGMR 316
            RSRS+ LR   +
Sbjct: 303 TRSRSSVLRIAEK 315


>gi|325269666|ref|ZP_08136279.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Prevotella multiformis DSM 16608]
 gi|324988034|gb|EGC20004.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Prevotella multiformis DSM 16608]
          Length = 314

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 114/306 (37%), Positives = 170/306 (55%), Gaps = 13/306 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HVPVLL++ I  LN   G + +D TFG GG+SR        GS++ + D+D  A      
Sbjct: 9   HVPVLLDESIEGLNLHRGGIYVDVTFGGGGHSREILSRLDGGSHLYSFDQDADAEQNTGR 68

Query: 77  --TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSG 131
                +   +F+  ++ F  L++++   GVD   G++ DLGVSS   D   RGFSF+   
Sbjct: 69  MGLSGEQVSRFTFVRSNFRYLKNWMRYYGVDKIDGLLADLGVSSHHFDDETRGFSFRFEA 128

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+  +G +A+D++N+ +   L  I  + GE KQ+ RIA AIVK R   PF+TT D
Sbjct: 129 PLDMRMNKRAGQTAADILNEYDEGRLADIFYLYGELKQSRRIAAAIVKARGQQPFKTTHD 188

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L +  +     ++  +     R FQALRI VN+E++ L + L +A + LK GG L V+++
Sbjct: 189 LLAAAEPFFPRAREKK--DLARMFQALRIEVNHEMDALREMLLAATELLKPGGRLSVITY 246

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDR+VK    S + +    +        P  F+ +  KV+  T ++   N RSRSAK
Sbjct: 247 HSLEDRMVKNIMKSGNIEGKVKQDFFGRIETP--FRLVNNKVITATDDEQERNPRSRSAK 304

Query: 311 LRAGMR 316
           LR   +
Sbjct: 305 LRIAEK 310


>gi|241762288|ref|ZP_04760369.1| S-adenosyl-methyltransferase MraW [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
 gi|241373191|gb|EER62821.1| S-adenosyl-methyltransferase MraW [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
          Length = 332

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 143/331 (43%), Positives = 198/331 (59%), Gaps = 12/331 (3%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSNVIALDRD 67
           M+S        H+PVLL++VI  L+P  G + +D TFGAGGYSR+   K  + VIA DRD
Sbjct: 1   MTS--DSFSAPHIPVLLDEVIEALSPVEGGIYIDGTFGAGGYSRAILEKADTQVIAFDRD 58

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQL---QDYVPDKGVDGVVFDLGVSSMQIDCGDRG 124
           P A+  G   +  YK +  L    FS +    D +  K VDG+VFD+GVSSMQID  +RG
Sbjct: 59  PDAIREGASLVEKYKGRLRLVNDCFSNIGHHLDALDIKAVDGMVFDIGVSSMQIDRPERG 118

Query: 125 FSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           FS Q  GPLDMRM+ +G+SA + +N A  KD+  +L + GEE+Q+ R+A AIV  R   P
Sbjct: 119 FSIQADGPLDMRMAQTGLSAEEFLNNAQEKDIADVLYLYGEERQSRRVARAIVAAR---P 175

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
             TT  L+ +I++++ +   ++  PA   FQA+RI +N E++EL  GL++AE+ LK+ G 
Sbjct: 176 LTTTFQLAKVIRQSLGYRPFDKKDPAAHCFQAIRIHLNRELDELKDGLQTAERFLKSKGC 235

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
           L VV+FHSLEDR+VK F    +G+     RH         VF S   + V   + ++A N
Sbjct: 236 LAVVTFHSLEDRIVKHFMREHAGQTGQVSRHQPVIPQQNPVFFSKPARPVRAGEAELARN 295

Query: 304 RRSRSAKLRAGMRTVERSIEDDSF--VHLPR 332
            R+RSA LRA  RT     ED S    H+PR
Sbjct: 296 PRARSATLRAVYRTETPFSEDISRPDTHIPR 326


>gi|218296762|ref|ZP_03497468.1| S-adenosyl-methyltransferase MraW [Thermus aquaticus Y51MC23]
 gi|218242851|gb|EED09385.1| S-adenosyl-methyltransferase MraW [Thermus aquaticus Y51MC23]
          Length = 286

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 126/305 (41%), Positives = 186/305 (60%), Gaps = 26/305 (8%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCG 74
               +H+PVL ++ + LL   PG+V +DAT G  G++R   + G  VIALD+DP AV   
Sbjct: 2   EATTEHIPVLYQEALDLLRVQPGQVYVDATLGGAGHTRGILERGGRVIALDQDPEAVERA 61

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +            ++A F  L++ + + GV+   G++ DLGVSS  ++   RGFS+Q+ G
Sbjct: 62  KALSHP---NLLAYRANFRHLKEVLKEAGVEEVAGILADLGVSSFHLEDPRRGFSYQQEG 118

Query: 132 PLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           PLDMRM   G +A +VVN   ++DL RIL  LGEE+QA RIA AIV+ R+ A  +TT +L
Sbjct: 119 PLDMRMGLEGPTAEEVVNTLPLEDLYRILRDLGEERQAYRIAKAIVEARRKARIRTTTEL 178

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++++ V F      HPA ++FQALRI+VN+E+  L + LR AE+ L  GG L+V++FH
Sbjct: 179 AEIVRRAVGF--RAAGHPARKTFQALRIYVNDELNALEEFLRQAEEVLAPGGRLVVIAFH 236

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+VK+F                     +  + +TKK + P+QE++A N R+RSAKL
Sbjct: 237 SLEDRIVKRFLRE------------------SRLKVLTKKPLTPSQEEMAKNPRARSAKL 278

Query: 312 RAGMR 316
           RA  +
Sbjct: 279 RAAEK 283


>gi|311748596|ref|ZP_07722381.1| S-adenosyl-methyltransferase MraW [Algoriphagus sp. PR1]
 gi|126577120|gb|EAZ81368.1| S-adenosyl-methyltransferase MraW [Algoriphagus sp. PR1]
          Length = 303

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 113/315 (35%), Positives = 171/315 (54%), Gaps = 20/315 (6%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDR 66
           M+ +++     H+PV+L +    L   P  + +D TFG GG+SR   K     ++   D+
Sbjct: 1   MTESVY-----HIPVMLPQCTEGLAIDPNGIYVDVTFGGGGHSREILKHLDKGHLYGFDQ 55

Query: 67  DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDR 123
           D  A++   E      E F+  QA F  L+ Y+   GV   DG++ DLG+SS QID   R
Sbjct: 56  DEDAIANIPE-----SENFTFVQANFRDLKRYLRLHGVKKVDGILADLGISSHQIDEPSR 110

Query: 124 GFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GFS + SG LDMRM+ S  +SA +V+N      L ++ GI GE + A  +A A+V  R +
Sbjct: 111 GFSTRFSGDLDMRMNQSAELSAKEVLNTYEAHQLHKVFGIYGEIRNAKTLAQAVVSERAA 170

Query: 183 APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
            PF+TT+  ++ ++K     K+       + FQALRI VN+E+  L + L  +   LK  
Sbjct: 171 QPFETTEGFTAFLKKYAPRGKD--FKYYAQVFQALRIEVNDEMGALEEMLLDSVDLLKPE 228

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G L+V+S+HSLEDRLVK        +    +    +   P   + +T+K V+  +E+VA 
Sbjct: 229 GRLVVMSYHSLEDRLVKNLIQKGKFQGEVEKDFYGNMIRP--LEPVTRKAVIADEEEVAR 286

Query: 303 NRRSRSAKLRAGMRT 317
           N R+RSAKLR   +T
Sbjct: 287 NPRARSAKLRVAKKT 301


>gi|289677689|ref|ZP_06498579.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv.
           syringae FF5]
          Length = 313

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 114/307 (37%), Positives = 174/307 (56%), Gaps = 12/307 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H+ VLLE+ +  L        LD TFG GG+SR           ++  D+DP A++ GQ 
Sbjct: 7   HITVLLEEAVEALAVRADGCYLDGTFGRGGHSRLILSQLGPDGRLLGFDKDPQAIATGQA 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            +     +F + Q +F++L     ++G    V G++ DLGVSS Q+D  +RGFSF   GP
Sbjct: 67  -LAAEDGRFVIVQRSFAELGSETQERGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDGP 125

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G+SA++ +  A  +++ R+    GEE+ A R+A+A+V RR+  PF+ T DL
Sbjct: 126 LDMRMDPARGVSAAEFIATAPAEEIARVFKEYGEERFAKRMANAVVARREVQPFERTADL 185

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + +++      +  + +PATR+FQ LRI VNNE+ +L  GL +A  AL+ GG L+V+SFH
Sbjct: 186 AEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLVVISFH 244

Query: 252 SLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK F    + G+   +   +P    P   +  I  K    +  +   N RSRSA
Sbjct: 245 SLEDRIVKLFMRKLAKGEADNMPRNLPIQYKPFEPKIKIHGKAQFASDVETKANPRSRSA 304

Query: 310 KLRAGMR 316
            +R   +
Sbjct: 305 VMRVAEK 311


>gi|310814902|ref|YP_003962866.1| S-adenosyl-methyltransferase MraW [Ketogulonicigenium vulgare Y25]
 gi|308753637|gb|ADO41566.1| S-adenosyl-methyltransferase MraW [Ketogulonicigenium vulgare Y25]
          Length = 328

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 139/327 (42%), Positives = 191/327 (58%), Gaps = 8/327 (2%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQE 76
             HV VL++ ++  + P    V +D TFGAGGY+R     G++ VI +DRDP       +
Sbjct: 5   APHVSVLIKPLVRAVAPVQ-GVWVDGTFGAGGYTRDLLAAGADKVIGIDRDPSVFPLSAD 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
                 ++  L   TFS++ + V +  VDGVV DLGVSSMQID  +RGFSFQK GPLDMR
Sbjct: 64  WRAAMPDRVDLRLGTFSEMDEIVGEM-VDGVVLDLGVSSMQIDQAERGFSFQKEGPLDMR 122

Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
           M  SG +A+D+ N    ++L  IL + GEE+ + RIA AIV+ R   P   T +L+ ++ 
Sbjct: 123 MGDSGPTAADLCNTLPEEELANILYLFGEERASRRIARAIVQAR---PITRTLELAEIVS 179

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
             +   K  + HPATRSFQALRI VN+E  +L  GL +AE+ LK GG L VV+FHS+EDR
Sbjct: 180 SCLPRQKPGQSHPATRSFQALRIAVNDEYRQLYDGLAAAERILKPGGYLAVVTFHSVEDR 239

Query: 257 LVKKFFASRSGKVMAVRHMIPS-NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           +VK+F   R+G V       P   + P  F  +T+K + P  ++VA N RSRSA LR   
Sbjct: 240 MVKRFMQLRAGAVGGGSRYAPEVQSAPPAFTLVTRKAIQPDDDEVAANPRSRSALLRVAK 299

Query: 316 RTVERS-IEDDSFVHLPRLPTLSQFRG 341
           RT   + + D   + +P L       G
Sbjct: 300 RTDAPAEMLDPGEIGMPTLEPAKPRGG 326


>gi|157963630|ref|YP_001503664.1| S-adenosyl-methyltransferase MraW [Shewanella pealeana ATCC 700345]
 gi|262826529|sp|A8H992|RSMH_SHEPA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|157848630|gb|ABV89129.1| S-adenosyl-methyltransferase MraW [Shewanella pealeana ATCC 700345]
          Length = 315

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 122/308 (39%), Positives = 176/308 (57%), Gaps = 13/308 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
           +H+ VLL + +A LN  P  + +D TFG GG+SR   +       +IA+DRDP A++   
Sbjct: 6   EHLSVLLAETVAGLNIRPDGIYIDGTFGRGGHSRKVLEELGPNGRLIAIDRDPQAIAAA- 64

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           E  +D   +F +    F QL DYV D G    +DGV+ D GVSS Q+D  +RGFSF + G
Sbjct: 65  EQFKD-DSRFQIVHGGFGQLADYVEDLGLKGQIDGVLLDFGVSSPQLDDAERGFSFLRDG 123

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  S G +A+  + +A ++D+  +    GEEK +  IA  I   R+ APF  T+D
Sbjct: 124 PLDMRMDNSQGETAAQWLARAEIEDMAWVFKTYGEEKNSRHIARCIAADREKAPFLRTKD 183

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ LI +     + N+ HPATR FQA+RI++N+E+E++ Q L  A   L   G L V+SF
Sbjct: 184 LADLIARITKNKERNK-HPATRVFQAIRIYINSELEQIDQALEGALAVLAPEGRLSVISF 242

Query: 251 HSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+VK+F    S    V     +  +  + +       K + P+ E+V  N R+RS
Sbjct: 243 HSLEDRMVKRFIRRNSQGESVPHGLPITEAEINKSRKLKAMGKAIKPSVEEVERNARARS 302

Query: 309 AKLRAGMR 316
           + LR   R
Sbjct: 303 SVLRIAER 310


>gi|240126238|ref|ZP_04739124.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae SK-92-679]
 gi|254494330|ref|ZP_05107501.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae 1291]
 gi|268595426|ref|ZP_06129593.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae 35/02]
 gi|268597236|ref|ZP_06131403.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae FA19]
 gi|268599411|ref|ZP_06133578.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae MS11]
 gi|268682771|ref|ZP_06149633.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae PID332]
 gi|268684819|ref|ZP_06151681.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae SK-92-679]
 gi|291043143|ref|ZP_06568866.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae DGI2]
 gi|262831552|sp|B4RQD7|RSMH_NEIG2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|226513370|gb|EEH62715.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae 1291]
 gi|268548815|gb|EEZ44233.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae 35/02]
 gi|268551024|gb|EEZ46043.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae FA19]
 gi|268583542|gb|EEZ48218.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae MS11]
 gi|268623055|gb|EEZ55455.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae PID332]
 gi|268625103|gb|EEZ57503.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae SK-92-679]
 gi|291012749|gb|EFE04732.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae DGI2]
          Length = 318

 Score =  356 bits (915), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 116/323 (35%), Positives = 172/323 (53%), Gaps = 13/323 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           MS A  +    H+ VLL + +  L      V +D TFG GG+SR           +I  D
Sbjct: 1   MSGAESY---RHITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFD 57

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGD 122
           +DP A++  +E +    ++  +    F+  Q  +   G   VDG +FDLG+SS QID G 
Sbjct: 58  KDPQAIAVAEE-LARSDKRVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGS 116

Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF+   PLDMRM  + G+SA++ +  A+ +DL  ++   GEE+ + +I  AIV +R 
Sbjct: 117 RGFSFRFDAPLDMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIVRAIVAQRA 176

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            +P  TT+ L+ ++ + V   +  +  PATR+FQA+RIF+N E+EE+   L      LK 
Sbjct: 177 ESPIDTTRKLAQIVAQNVRTRERGQ-DPATRTFQAIRIFINRELEEVGAVLPQVMCRLKE 235

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDV 300
           GG L V++FHSLEDR+VK+F    S             A  P     I  + + P + ++
Sbjct: 236 GGRLAVIAFHSLEDRIVKQFVKKYSQHEPLPSWAAVREADLPEPPLKIVGRALKPGEAEI 295

Query: 301 AFNRRSRSAKLRAGMRTVERSIE 323
           A N R+RSA LR   RT     E
Sbjct: 296 AANPRARSAVLRVAERTAGPIPE 318


>gi|89067948|ref|ZP_01155392.1| S-adenosyl-methyltransferase MraW [Oceanicola granulosus HTCC2516]
 gi|89046546|gb|EAR52602.1| S-adenosyl-methyltransferase MraW [Oceanicola granulosus HTCC2516]
          Length = 320

 Score =  356 bits (915), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 143/326 (43%), Positives = 198/326 (60%), Gaps = 16/326 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRD 67
           MS+A       H PVL+E +I    P      LD TFG GGY+R+  + G+ +VI +DRD
Sbjct: 1   MSAA-----APHTPVLIEPIIEACAPVS-GTWLDGTFGFGGYARALLEAGAAHVIGIDRD 54

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
           P A         +   + +L + TFS+L  +   + +DGVV DLGVSSMQ+D  +RGFSF
Sbjct: 55  PLAHELAGWVADE--PRVTLIRGTFSELDRH--GEALDGVVLDLGVSSMQLDRPERGFSF 110

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
              GPLDMRMS  G SA+D+VN+ + + +  IL   GEE+ + RIA AIV+ R   P  T
Sbjct: 111 MSDGPLDMRMSQDGPSAADLVNELDERTIADILFNYGEERASRRIARAIVRAR---PLAT 167

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T +L++L++  +   K  + HPATR+FQALRI VNNE  ELA+GL +AE+AL  GGLL V
Sbjct: 168 TAELAALVEGCLPRPKPGQSHPATRTFQALRIAVNNEYGELAEGLMAAERALAPGGLLAV 227

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRS 306
           V+FHS+EDR+VK+F  +R+G+        P  A  P  F  +T+K +   + +VA N R+
Sbjct: 228 VTFHSVEDRMVKRFMQARAGQTGGPSRHAPDVAQAPPAFGLVTRKAIGADEAEVARNPRA 287

Query: 307 RSAKLRAGMRTVERSIE-DDSFVHLP 331
           RSAKLR   RT   +   D   + +P
Sbjct: 288 RSAKLRIARRTDAPAAPVDIKSLGMP 313


>gi|262831577|sp|A4VIH0|RSMH_PSEU5 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 315

 Score =  356 bits (915), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 118/310 (38%), Positives = 176/310 (56%), Gaps = 14/310 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H+ VLL++ +A LN       LD TFG GG+SR   +       ++  D+DP A++ GQ 
Sbjct: 9   HITVLLDEAVAALNVRADGRYLDGTFGRGGHSRLLLQQLGPNGQLLGFDKDPLAIATGQA 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            +     +F + Q +F++L D V  +G    V G++ DLGVSS Q+D   RGFSF   GP
Sbjct: 69  -LAAEDGRFVVVQRSFAELGDEVAQRGWTGAVSGILLDLGVSSPQLDDPIRGFSFLNDGP 127

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G+SA++ +  A+  ++ R+    GEE+ A R+A A+V+RR  APF+ T DL
Sbjct: 128 LDMRMDPSRGVSAAEWIASADEDEIARVFKDYGEERFAKRMARAVVQRRAEAPFERTADL 187

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++       +  +  PATR+FQ LRI +NNE+ +L +GL +A  AL+ GG L+V+SFH
Sbjct: 188 AKVLTDANPAWEKGK-SPATRAFQGLRIHINNELGDLERGLDAALDALEVGGRLVVISFH 246

Query: 252 SLEDRLVKKFFASRSG---KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SLEDR+VK+F    +      +     I   A     + I  K    ++ +V  N RSRS
Sbjct: 247 SLEDRIVKQFMRRHAKGEADKLPRDLPIIPKAFEPRLKLI-GKPQYASEAEVKANPRSRS 305

Query: 309 AKLRAGMRTV 318
           A +R   +  
Sbjct: 306 AVMRVAEKVR 315


>gi|313891489|ref|ZP_07825102.1| S-adenosyl-methyltransferase MraW [Dialister microaerophilus UPII
           345-E]
 gi|313120066|gb|EFR43245.1| S-adenosyl-methyltransferase MraW [Dialister microaerophilus UPII
           345-E]
          Length = 310

 Score =  356 bits (915), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 101/308 (32%), Positives = 169/308 (54%), Gaps = 10/308 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
            HV VL  ++I+ +      V  D T G  G+     +    G+ +I +D+D  A+   +
Sbjct: 4   KHVTVLRREMISAVLTDKNGVYADCTLGGAGHLSLLSEKVENGALLIGIDQDLDALKAAE 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             M+D     +   + FS +++ + +K    ++G +FDLGVSS Q+D  +RGFS+   G 
Sbjct: 64  LRMKDCTCNLNFVHSNFSNIKNILSEKNLNKINGFIFDLGVSSYQLDEANRGFSYMHEGR 123

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+  S ++A DVVN+ + + +  I+   GEE+ A RIA  IV  R++   +TT +L
Sbjct: 124 LDMRMNQNSELTAHDVVNKYSEEKIAFIIKEYGEERWAKRIAEFIVDYRKNKIIETTGEL 183

Query: 192 SSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
            S+I+  +   ++ N  HPA R+FQA+RI VNNE+  +   +      L +GG + +++F
Sbjct: 184 VSIIKAAIPLGARKNGPHPAKRTFQAIRIEVNNELGIIESTINDCVDCLVSGGRIGIITF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK+ F + + + +      +    H    + +    + PT E++A N R+RSA
Sbjct: 244 HSLEDRIVKRTFKNLAKQCICPPEFPLCVCNHQRKIKLLGNG-IRPTDEEIAENPRARSA 302

Query: 310 KLRAGMRT 317
            LR   + 
Sbjct: 303 ILRVAEKI 310


>gi|293392868|ref|ZP_06637186.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Serratia
           odorifera DSM 4582]
 gi|291424727|gb|EFE97938.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Serratia
           odorifera DSM 4582]
          Length = 313

 Score =  356 bits (915), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 117/311 (37%), Positives = 179/311 (57%), Gaps = 19/311 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H  VLL++ +  LN     + +D TFG GG+SR           ++A+DRDP A++  +
Sbjct: 6   KHTTVLLDEAVNGLNIRSNGIYIDGTFGRGGHSRLILSQLGPEGRLLAIDRDPQAIAAAK 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +F++    FS L  YV ++     +DGV+ DLGVSS Q+D  +RGFSF + G
Sbjct: 66  SI---EDPRFTIVHGPFSDLSHYVRERELVGKIDGVLLDLGVSSPQLDDAERGFSFMRDG 122

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + G SA++ + +A   D+  +L   GEE+ A RIA AIV+R ++ P   T++
Sbjct: 123 PLDMRMDPTRGQSAAEWLLKAEADDIAWVLKTFGEERFAKRIARAIVERNKTEPMTRTKE 182

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ LI     F + ++ HPATRSFQA+RI++N+E+EE+ + L  A + L   G L ++SF
Sbjct: 183 LADLIADASPFREKHK-HPATRSFQAIRIYINSELEEIERALDGALEVLAPQGRLSIISF 241

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRR 305
           HSLEDR+VK+F    S        +  + A          +S+ K  ++P++ +VA N R
Sbjct: 242 HSLEDRIVKRFMRHHSRGAQVPAGLPLTEAQLRELGGRNLKSLGK--MMPSEAEVAENPR 299

Query: 306 SRSAKLRAGMR 316
           +RS+ LR   R
Sbjct: 300 ARSSVLRIAER 310


>gi|328950951|ref|YP_004368286.1| Ribosomal RNA small subunit methyltransferase H [Marinithermus
           hydrothermalis DSM 14884]
 gi|328451275|gb|AEB12176.1| Ribosomal RNA small subunit methyltransferase H [Marinithermus
           hydrothermalis DSM 14884]
          Length = 281

 Score =  356 bits (915), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 123/302 (40%), Positives = 175/302 (57%), Gaps = 27/302 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQE-TM 78
           HVPVL  + + LL    G + +DAT G  G++R   + G  VI  D+DP A++  +   +
Sbjct: 3   HVPVLYHETLELLAVQRGGLYVDATLGGAGHTRGILERGGQVIGFDQDPEAIARVRALRL 62

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
               +  +L +  F  L+ ++ + GV   DGV+ DLGVSS   D  +RGFS++  GPLDM
Sbjct: 63  ----DGLTLVEGNFRHLEAHLNELGVAEVDGVLADLGVSSYHFDNPERGFSYRHEGPLDM 118

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RMS  G +A+DVVN   V++L RIL   GEE +A RIA  I + R+  P +TT  L+ ++
Sbjct: 119 RMSGEGPTAADVVNTYPVEELARILRTFGEEPRAWRIARRIAEVREQQPIRTTTQLAEVV 178

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           ++ V        HPA ++FQALRI+VN+E+  L   L +A + LK GG L V+SFHSLED
Sbjct: 179 RQAV--GWRGAGHPARKTFQALRIYVNDELGALEAFLEAAARVLKPGGRLAVISFHSLED 236

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           R+VK+F                     A FQ +TKK + P+  + A N R+RSAKLR G+
Sbjct: 237 RIVKRFLKED-----------------ARFQVLTKKPITPSDAERATNPRARSAKLRGGV 279

Query: 316 RT 317
           R 
Sbjct: 280 RV 281


>gi|241205565|ref|YP_002976661.1| S-adenosyl-methyltransferase MraW [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|262825385|sp|C6ARU7|RSMH_RHILS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|240859455|gb|ACS57122.1| S-adenosyl-methyltransferase MraW [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 341

 Score =  356 bits (915), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 170/309 (55%), Positives = 214/309 (69%), Gaps = 1/309 (0%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFS 93
           PAPGK+ILD TFGAGGYS +    G+ VIALDRDP A++ GQ  +  +  +F L  + FS
Sbjct: 33  PAPGKLILDGTFGAGGYSSAILAAGAEVIALDRDPTAIAAGQAMVAAHGGRFKLVHSQFS 92

Query: 94  QLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANV 153
            L D+ P  G+DGVV D+GVSSMQID  +RGFSFQK+GPLDMRMS  G+SA+DVVN+A V
Sbjct: 93  HLADHAPQGGLDGVVLDIGVSSMQIDEAERGFSFQKNGPLDMRMSAEGVSAADVVNRAKV 152

Query: 154 KDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRS 213
            DL RI   LGEE QA RIAHAI KRR   PF+TT+DL+ LI+        ++IHPATR 
Sbjct: 153 ADLIRIFHFLGEESQAPRIAHAIEKRRAEKPFETTRDLAGLIELVTPRKMKDKIHPATRV 212

Query: 214 FQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVR 273
           FQALRIFVN+E+ ELAQ L +AE ALK GG L+ V+FHSLEDR+VKKFF+ R+GK    R
Sbjct: 213 FQALRIFVNDELGELAQALFAAEAALKPGGRLVAVTFHSLEDRIVKKFFSDRAGKASGSR 272

Query: 274 HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERS-IEDDSFVHLPR 332
           H+  ++   A F +I K +V  ++ +   N R+RSAKLRAG+RT   +   D S    P 
Sbjct: 273 HLPVAHERAATFAAIGKPMVSASEAEAEINPRARSAKLRAGLRTEAAAEAADMSLFGFPN 332

Query: 333 LPTLSQFRG 341
           L +L +  G
Sbjct: 333 LASLGKLGG 341


>gi|329295550|ref|ZP_08252886.1| 16S rRNA m(4)C1402 methyltranserfase [Plautia stali symbiont]
          Length = 313

 Score =  356 bits (915), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 119/315 (37%), Positives = 173/315 (54%), Gaps = 15/315 (4%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAV 71
                H  VLL++ +  LN     + +D TFG GG+SR           ++A+DRDP A+
Sbjct: 2   QENFKHTTVLLDEAVNGLNIREDGIYIDGTFGRGGHSRLILSQLGAHGQLLAIDRDPQAI 61

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSF 127
           +   E       +FS+    FS L +YV ++G    +DGV+ DLGVSS Q+D  +RGFSF
Sbjct: 62  AAAAEI---KDPRFSIVHGPFSALAEYVEERGLTGKIDGVLLDLGVSSPQLDDAERGFSF 118

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
            + GPLDMRM    G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P  
Sbjct: 119 MRDGPLDMRMDPRRGQSAAEWLQSAEEADIAFVLKTYGEERFAKRIARAIVERNREQPMT 178

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
            T++L+ LI       K+   HPATRSFQA+RI++N+E+EE+   L+ A   L  GG L 
Sbjct: 179 RTKELADLIAAATPV-KDKFKHPATRSFQAIRIWLNSELEEIDIALKGALTVLAPGGRLS 237

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFN 303
           ++SFHSLEDRLVK+F   +S        +  + +        +  T   ++  + +V  N
Sbjct: 238 IISFHSLEDRLVKRFMRDQSRGPQVPAGIPMTESQLKALGGRELKTLGKLILGEAEVKDN 297

Query: 304 RRSRSAKLRAGMRTV 318
            R+RS+ LR   RT 
Sbjct: 298 PRARSSVLRIAERTA 312


>gi|58583456|ref|YP_202472.1| S-adenosyl-methyltransferase MraW [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58428050|gb|AAW77087.1| cell division protein [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 353

 Score =  356 bits (915), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 117/309 (37%), Positives = 174/309 (56%), Gaps = 7/309 (2%)

Query: 12  AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDP 68
            +      HVPVL  +V+  L        LD TFG GG++R   +    G  ++ +D+DP
Sbjct: 16  PVSQPPAAHVPVLYTQVLDGLQVTENGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDP 75

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
            A++  ++T      + S+ + +F+ L   V    VDG++ DLGVSS Q++   RGFSF 
Sbjct: 76  EAIAVAEQTFGG-DARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLEVAGRGFSFG 134

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           K GPLDMRM   SG SA+  + QA  +++  +L   GEE+Q+ RIA AIV RR   P   
Sbjct: 135 KDGPLDMRMDPDSGQSAAQWLAQATDREIADVLWTYGEERQSRRIARAIVARRAEQPLLR 194

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T  L+ LI   +    +++ HPATRSFQA+RI++N E+++L  GL +A  ALK GG L V
Sbjct: 195 TAQLADLIASVMPRG-DSKTHPATRSFQAIRIYINRELDDLETGLDAALAALKPGGRLAV 253

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +SFHSLEDR+VK+F A  +    + R +  +       Q ++   +     ++  N R+R
Sbjct: 254 ISFHSLEDRIVKQFMARYAKAPPSNRRLPEAQPFVPTLQLVS-GAIKADDAELNVNPRAR 312

Query: 308 SAKLRAGMR 316
           SA LR   +
Sbjct: 313 SAVLRVAEK 321


>gi|83589686|ref|YP_429695.1| methyltransferase [Moorella thermoacetica ATCC 39073]
 gi|123524773|sp|Q2RK87|RSMH_MOOTA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|83572600|gb|ABC19152.1| methyltransferase [Moorella thermoacetica ATCC 39073]
          Length = 318

 Score =  356 bits (915), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 118/308 (38%), Positives = 170/308 (55%), Gaps = 9/308 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET-- 77
           H PVLL +V+ LL+P PG+  +DAT G GG+SR+          L               
Sbjct: 5   HQPVLLTEVLHLLDPQPGEFFVDATVGGGGHSRAILPRLLPGGHLLGLDRDAEAVAAARE 64

Query: 78  -MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  +     + QA F  L   +      GVDG++FDLGVSS Q+D  +RGFS+Q   PL
Sbjct: 65  RLAAFGANVEIVQANFRDLAAILEARGIPGVDGLLFDLGVSSYQLDNPERGFSYQVDAPL 124

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     ++A++VVN    + LTR++   GEE+ A RIA  IV  R+  P  TT  L 
Sbjct: 125 DMRMGQDQELTAAEVVNNWPEEKLTRVIWQYGEERWAPRIAAFIVASRRQRPITTTGQLV 184

Query: 193 SLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           ++I++ +   ++ +  HPA R+FQALRI +N E++ L   L   +  LK GG + V+SFH
Sbjct: 185 AIIKEAIPAGARRSGHHPAKRTFQALRIAINGELDALRAALEQLDSILKPGGRVGVISFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK+ F S SG+        + +     V   +T+K V+PT  ++  N R+RSAK
Sbjct: 245 SLEDRIVKEAFRSLSGRCTCPPGLPVCTCGRREVLVPVTRKPVIPTAAEIVANPRARSAK 304

Query: 311 LRAGMRTV 318
           LR   R +
Sbjct: 305 LRVARRVL 312


>gi|327479635|gb|AEA82945.1| S-adenosyl-methyltransferase MraW [Pseudomonas stutzeri DSM 4166]
          Length = 315

 Score =  356 bits (915), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 118/310 (38%), Positives = 177/310 (57%), Gaps = 14/310 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H+ VLL++ +A L+       LD TFG GG+SR   +       ++  D+DP A++ GQ 
Sbjct: 9   HITVLLDEAVAALSVRADGRYLDGTFGRGGHSRLLLQQLGPNGQLLGFDKDPLAIATGQA 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            +     +F + Q +F++L D V  +G    V G++ DLGVSS Q+D   RGFSF   GP
Sbjct: 69  -LAAEDGRFVVVQRSFAELGDEVAQRGWMGAVSGILLDLGVSSPQLDDPIRGFSFLNDGP 127

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G+SAS+ +  A+  ++ R+    GEE+ A R+A A+V+RR  APF+ T DL
Sbjct: 128 LDMRMDPSRGVSASEWIASADEDEIARVFKDYGEERFAKRMARAVVQRRAEAPFERTADL 187

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++       +  + +PATR+FQ LRI +NNE+ +L  GL +A +AL+ GG L+V+SFH
Sbjct: 188 AKVLTDANPAWEKGK-NPATRAFQGLRIHINNELGDLECGLDAALEALEVGGRLVVISFH 246

Query: 252 SLEDRLVKKFFASRSG---KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SLEDR+VK+F    +      +     I   A     + I  K    ++ +V  N RSRS
Sbjct: 247 SLEDRIVKQFMRRHAKGEADKLPRDLPIIPKAFEPRLKLI-GKPQYASEAEVKANPRSRS 305

Query: 309 AKLRAGMRTV 318
           A +R   +  
Sbjct: 306 AVMRVAEKVR 315


>gi|59801880|ref|YP_208592.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae FA 1090]
 gi|268601983|ref|ZP_06136150.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae PID18]
 gi|268604315|ref|ZP_06138482.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae PID1]
 gi|268687198|ref|ZP_06154060.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae
           SK-93-1035]
 gi|293398479|ref|ZP_06642657.1| methylase MraW [Neisseria gonorrhoeae F62]
 gi|68565408|sp|Q5F6K7|RSMH_NEIG1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|59718775|gb|AAW90180.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
 gi|268586114|gb|EEZ50790.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae PID18]
 gi|268588446|gb|EEZ53122.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae PID1]
 gi|268627482|gb|EEZ59882.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae
           SK-93-1035]
 gi|291610950|gb|EFF40047.1| methylase MraW [Neisseria gonorrhoeae F62]
          Length = 318

 Score =  356 bits (915), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 116/323 (35%), Positives = 172/323 (53%), Gaps = 13/323 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           MS A  +    H+ VLL + +  L      V +D TFG GG+SR           +I  D
Sbjct: 1   MSGAESY---RHITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFD 57

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGD 122
           +DP A++  +E +    ++  +    F+  Q  +   G   VDG +FDLG+SS QID G 
Sbjct: 58  KDPQAIAVAEE-LARSDKRVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGS 116

Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF+   PLDMRM  + G+SA++ +  A+ +DL  ++   GEE+ + +I  AIV +R 
Sbjct: 117 RGFSFRFDAPLDMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIVRAIVAQRA 176

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            +P  TT+ L+ ++ + V   +  +  PATR+FQA+RIF+N E+EE+   L      LK 
Sbjct: 177 ESPIDTTRKLAQIVAQNVRTRERGQ-DPATRTFQAIRIFINRELEEVGAVLPQVMCRLKE 235

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDV 300
           GG L V++FHSLEDR+VK+F    S             A  P     I  + + P + ++
Sbjct: 236 GGRLAVIAFHSLEDRIVKQFVKKYSQHEPLPSWAAVREADLPDPPLKIVGRALKPGEAEI 295

Query: 301 AFNRRSRSAKLRAGMRTVERSIE 323
           A N R+RSA LR   RT     E
Sbjct: 296 AANPRARSAVLRVAERTAGPIPE 318


>gi|71909118|ref|YP_286705.1| methyltransferase [Dechloromonas aromatica RCB]
 gi|88909196|sp|Q47A96|RSMH_DECAR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|71848739|gb|AAZ48235.1| methyltransferase [Dechloromonas aromatica RCB]
          Length = 308

 Score =  356 bits (915), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 117/305 (38%), Positives = 175/305 (57%), Gaps = 12/305 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPFAVSCGQE 76
           HV VLLE+ +  L      V +DATFG GG+SR           ++A+DRDP A++ G E
Sbjct: 7   HVTVLLEEAVGALAIKADGVYVDATFGRGGHSRRILSELNQNGRLVAVDRDPQAIAAGAE 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +F L    F +L +   + G   VDGV+FD+GVSS QID G+RGFSF+   PL
Sbjct: 67  I---DDSRFLLVHRAFGELAEAADEAGIRDVDGVLFDVGVSSPQIDDGERGFSFRYDAPL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  + G +A++ + +A ++D+T ++   GEE+ A +IA  +V  R   P  TT   +
Sbjct: 124 DMRMDTTQGETAAEWLARAEIRDITEVIRNYGEERFAFQIAKKVVAARLEQPIVTTGQFA 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +L+++TV   +  +  PATRSFQALRI +N E+ +L   L  A + LK GG L+V+SFHS
Sbjct: 184 ALVRETVRTREPGQ-DPATRSFQALRIHINQELRQLEVALPQALELLKPGGRLVVISFHS 242

Query: 253 LEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK F   +S    M     + ++  P     +  + + P+  ++  N R+RSA +
Sbjct: 243 LEDRIVKNFMRDQSIADAMPKSLPLRADQLPKPKLRLVGRPIKPSAAEIDANPRARSAVM 302

Query: 312 RAGMR 316
           R   +
Sbjct: 303 RIAEK 307


>gi|90020487|ref|YP_526314.1| S-adenosyl-methyltransferase MraW [Saccharophagus degradans 2-40]
 gi|123277667|sp|Q21MH7|RSMH_SACD2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|89950087|gb|ABD80102.1| S-adenosyl-methyltransferase MraW [Saccharophagus degradans 2-40]
          Length = 312

 Score =  356 bits (914), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 110/308 (35%), Positives = 168/308 (54%), Gaps = 12/308 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H  VLL++ +  L   P    +D TFG GG+SR+          +  +D+DP AV+ G 
Sbjct: 5   PHFSVLLQESVESLVVDPAGTYVDGTFGRGGHSRAILAKLGPEGKLFGIDKDPEAVAVG- 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDY------VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
           + +     +F +   +F+ L+            G+ GV+ DLGVSS Q+D  +RGFSF  
Sbjct: 64  KALEAEDSRFRIVHGSFADLKHIDLLQADFAAGGLSGVLVDLGVSSPQLDVAERGFSFMN 123

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM+   G++A++ +N A  +D+ ++L   GEE+ +  +A AIV+RR+  PF  T
Sbjct: 124 DGPLDMRMNTEAGMTAAEWINTAKQEDIAQVLWEYGEERFSRHMAKAIVERREIKPFTRT 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            D + +++           HPATR+FQA+RIF+N E+E+L Q L  +   L  GG  +V+
Sbjct: 184 HDFAEVVKAA-NRKWEKGKHPATRAFQAVRIFINRELEDLRQLLDDSVSVLAPGGRFVVI 242

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDR+VK+FF  +S      + +  +         I  K +     ++  N RSRS
Sbjct: 243 SFHSLEDRMVKRFFRDQSMGKQFPKGLPVTEEMKKQNLKIIGKALKAGDTELTQNIRSRS 302

Query: 309 AKLRAGMR 316
           A +R G R
Sbjct: 303 AVMRVGER 310


>gi|297539600|ref|YP_003675369.1| S-adenosyl-methyltransferase MraW [Methylotenera sp. 301]
 gi|297258947|gb|ADI30792.1| S-adenosyl-methyltransferase MraW [Methylotenera sp. 301]
          Length = 316

 Score =  356 bits (914), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 113/316 (35%), Positives = 165/316 (52%), Gaps = 13/316 (4%)

Query: 11  SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRD 67
           S +      H+ VLLE+ +  L      V +D TFG GG+SR   +       +IA DRD
Sbjct: 2   SELSLNTNSHITVLLEEAVQALAIKADGVYVDGTFGRGGHSRKILEKLGSSGRLIAFDRD 61

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRG 124
             A+   +E       +FS+  + F+ +Q  + + GV   DG++ DLG+SS QID   RG
Sbjct: 62  LKAIESSKEI---TDPRFSMVHSHFAGMQAELSEMGVSKVDGILLDLGISSPQIDDASRG 118

Query: 125 FSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           FSF+   PLDMRM  S G +A+D +     + L  ++   GEE+ A +IA AI+  R   
Sbjct: 119 FSFRYDAPLDMRMDQSSGQTAADFLANTTEQHLGEVIKNYGEERFAKQIARAIITERNDG 178

Query: 184 P-FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
               TT  L+ ++   V   +  + +PATR+FQALRI+VN E+EEL+  +      L   
Sbjct: 179 RAITTTGQLAKVVAGAVTRFEPGQ-NPATRTFQALRIYVNQELEELSLTMPQCLALLAPQ 237

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           G L V+SFHSLEDR+VK+F   +     +     + +   P        K + P+ ++V 
Sbjct: 238 GRLAVISFHSLEDRIVKQFIRDQENRDDLPANFPVRAADLPQPKLKGVGKTIKPSTKEVK 297

Query: 302 FNRRSRSAKLRAGMRT 317
            N RSRSA LR   RT
Sbjct: 298 ANPRSRSAVLRVAERT 313


>gi|116670123|ref|YP_831056.1| S-adenosyl-methyltransferase MraW [Arthrobacter sp. FB24]
 gi|263447796|sp|A0JV86|RSMH_ARTS2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|116610232|gb|ABK02956.1| S-adenosyl-methyltransferase MraW [Arthrobacter sp. FB24]
          Length = 332

 Score =  356 bits (914), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 126/324 (38%), Positives = 188/324 (58%), Gaps = 15/324 (4%)

Query: 15  HTIGDHVPVLLEKVIALLNP------APGK--VILDATFGAGGYSRSFCKMGS--NVIAL 64
            T   HVPVL ++ I LL P        G+  V++DAT G GG+S +  +     ++I +
Sbjct: 9   PTSERHVPVLKDRCINLLAPGIEAARQRGETPVVIDATLGMGGHSEALLQRFPDLHLIGI 68

Query: 65  DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCG 121
           DRD  A++   E ++ + ++  L  A + ++ D + D GV    GV+ DLGVSS+Q+D  
Sbjct: 69  DRDEEALALAGERLKPFADRTDLVHAVYDEIPDVLRDLGVSEVHGVLMDLGVSSLQLDER 128

Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGF++    PLDMRM  S G +A+DVVN  + +DL RI+   GEEK A RIA+ IV  R
Sbjct: 129 ERGFAYSFDAPLDMRMDTSRGQTAADVVNNYSEEDLVRIIRKWGEEKFAGRIANRIVAAR 188

Query: 181 QSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
           ++ PF TT +L   I+  V   +     HPA R+FQALRI VN E++ L + + +A  AL
Sbjct: 189 EAKPFATTGELVDTIRAVVPAGAAKTGGHPAKRTFQALRIEVNEELDVLERAVPAAVDAL 248

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
             GG ++V+S+HSLED++VKK F + S     +   +    H    +++TK   VPT ++
Sbjct: 249 AMGGRVVVMSYHSLEDKIVKKVFQTGSKSSAPLGFPVELEEHKPELKTLTKGTEVPTADE 308

Query: 300 VAFNRRSRSAKLRAGMRTVERSIE 323
           +A N R+ SA+LRA  R   R   
Sbjct: 309 IAENPRAASARLRAVERIRARRAA 332


>gi|148549600|ref|YP_001269702.1| S-adenosyl-methyltransferase MraW [Pseudomonas putida F1]
 gi|262825108|sp|A5W8Q8|RSMH_PSEP1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|148513658|gb|ABQ80518.1| S-adenosyl-methyltransferase MraW [Pseudomonas putida F1]
          Length = 315

 Score =  356 bits (914), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 115/308 (37%), Positives = 174/308 (56%), Gaps = 12/308 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
           +H+ VLL++ +  L        LD TFG GG+SR           ++  D+DP A++ GQ
Sbjct: 8   NHITVLLDEAVEALALRADGCYLDGTFGRGGHSRLILSKLGPQGRLLGFDKDPQAIATGQ 67

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
             +     +F + Q +F++L   V  +G    V GV+ DLGVSS Q+D  +RGFSF   G
Sbjct: 68  A-LAAEDGRFVIVQRSFAELGAEVAARGLHGKVSGVLLDLGVSSPQLDDPERGFSFLNDG 126

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+   GISA++ +  A V+++ R+    GEE+ A R+A A+V+RR+  PF  T D
Sbjct: 127 PLDMRMNPDQGISAAEFIATAPVEEIARVFKEYGEERFAGRMARAVVERREKQPFTRTAD 186

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ +++      +  + +PATR+FQ LRI VNNE+ +L  GL +A  AL+ GG L V+SF
Sbjct: 187 LAEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLAVISF 245

Query: 251 HSLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+VK F      G+   +   +P        +  +  K    ++ ++  N RSRS
Sbjct: 246 HSLEDRIVKLFMRKLVKGEADNLPRNLPVQHKVFEPKIKLIGKAQFASEAELKANPRSRS 305

Query: 309 AKLRAGMR 316
           A +R   +
Sbjct: 306 AVMRVAEK 313


>gi|254470515|ref|ZP_05083919.1| S-adenosyl-methyltransferase MraW [Pseudovibrio sp. JE062]
 gi|211960826|gb|EEA96022.1| S-adenosyl-methyltransferase MraW [Pseudovibrio sp. JE062]
          Length = 346

 Score =  356 bits (914), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 157/329 (47%), Positives = 212/329 (64%), Gaps = 7/329 (2%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77
             H+PVLL++V   + PAPG VI+D TFGAGGYS +F + G++VI +DRDP A+  G+  
Sbjct: 17  ARHIPVLLDRVREAMAPAPGDVIVDGTFGAGGYSSAFLEAGASVIGIDRDPDAIRDGRAL 76

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
            +    +  L    F  L+++    G   VDGVV DLGVSSMQ+D   RGFSF+  GPLD
Sbjct: 77  EQASDGRLKLVHGQFVDLEEHARALGHDAVDGVVMDLGVSSMQLDQAARGFSFRFDGPLD 136

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRM   G SA+DVVN    KDLTRI+G+LGEEK+AS ++HAI + R+  PF+TT +L+ +
Sbjct: 137 MRMEQDGPSAADVVNTMERKDLTRIIGLLGEEKRASSVSHAICQAREEKPFETTLELARV 196

Query: 195 IQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           I+K V    K   IHPATR+FQALRI+VN E+ + A  L +AE+ L+ GG L+VV+FHSL
Sbjct: 197 IEKVVKRNPKKASIHPATRTFQALRIYVNGELHQAAGALAAAERILRPGGRLVVVTFHSL 256

Query: 254 EDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           EDR+VK+F A R   +    RHM   +  P  F+ I K     + E+V+ N R+RSA+LR
Sbjct: 257 EDRIVKRFLADRCKTRGGGSRHMPEVDIPPPTFEFIVKGNQDASVEEVSENPRARSARLR 316

Query: 313 AGMRTVERSIEDDSFVHLPRLPTLSQFRG 341
           AG R    +   D  +H   +P L+ F G
Sbjct: 317 AGRRLDSPARPLD--IHEAGVPRLASFHG 343


>gi|21230192|ref|NP_636109.1| S-adenosyl-methyltransferase MraW [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|188993033|ref|YP_001905043.1| S-adenosyl-methyltransferase MraW [Xanthomonas campestris pv.
           campestris str. B100]
 gi|24212033|sp|Q8PCK7|RSMH_XANCP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263504525|sp|B0RVB2|RSMH_XANCB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|21111730|gb|AAM40033.1| cell division protein [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|167734793|emb|CAP53003.1| S-adenosyl-methyltransferase [Xanthomonas campestris pv.
           campestris]
          Length = 342

 Score =  356 bits (914), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 123/331 (37%), Positives = 177/331 (53%), Gaps = 11/331 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69
           +      HVPVL  +V+  L        LD TFG GG++R   +    G  ++ +D+DP 
Sbjct: 1   MSQPPAAHVPVLYTQVLEGLQVTENGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDPE 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
           A++  + T      + S+ + +F+ L   V    VDG++ DLGVSS Q+D   RGFSF K
Sbjct: 61  AIAVAEHTFGG-DARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLDVAGRGFSFGK 119

Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM   SG SA+  + QA  +++  +L   GEE+Q+ RIA AIV RR   P   T
Sbjct: 120 DGPLDMRMDPDSGQSAAGWLAQATDREIADVLWTYGEERQSRRIARAIVARRGEQPLLRT 179

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ LI   +    +++ HPATRSFQA+RI +N E+ +L  GL +A  ALK GG L V+
Sbjct: 180 AQLADLIASVMPRG-DSKTHPATRSFQAIRIHINRELADLEAGLDAALGALKPGGRLAVI 238

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDR+VK+F A  +    + R +  +       Q ++   +     ++A N R+RS
Sbjct: 239 SFHSLEDRIVKQFMARYAKAPPSNRRLPEAQPFVPTLQLVS-GAIKADDSELAVNPRARS 297

Query: 309 AKLRAGMR----TVERSIEDDSFVHLPRLPT 335
           A LR   +      E  +         R PT
Sbjct: 298 AVLRVAEKLGMENRESGMGKGHGAAASRFPT 328


>gi|114330281|ref|YP_746503.1| S-adenosyl-methyltransferase MraW [Nitrosomonas eutropha C91]
 gi|123321952|sp|Q0AJD3|RSMH_NITEC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|114307295|gb|ABI58538.1| S-adenosyl-methyltransferase MraW [Nitrosomonas eutropha C91]
          Length = 317

 Score =  356 bits (914), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 115/318 (36%), Positives = 177/318 (55%), Gaps = 18/318 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            H+ VLLE+ +  LN   G + +D T+G GG+SR           +IA D+DP A+S  +
Sbjct: 1   MHISVLLEEAVDALNIQKGGIYVDGTYGRGGHSRLILSRLDKSGQLIAFDKDPAAISEAR 60

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +    E+F    ++++ +   +   G   VDG++ DLGVSS+Q+D   RGFSF+  GP
Sbjct: 61  SIL---DERFQAVHSSYAGMYTALQSLGINRVDGILLDLGVSSIQLDEASRGFSFRHDGP 117

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G +A++ +  A+  +L  I+   GEE+ A +IA AIV  +   P  TT  L
Sbjct: 118 LDMRMDSSRGKTAAEWLTMASETELKEIIRTYGEERYAGQIASAIVMEQARQPISTTLRL 177

Query: 192 SSLIQKTVYFS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           + ++   V     +++R HPATR+FQA+RI +N E+EEL+  L    + L  GG L+V+S
Sbjct: 178 AEIVAAVVRKRGHRDDRQHPATRTFQAIRIHLNQELEELSMTLPQCVELLNTGGRLVVIS 237

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNR 304
           FHSLEDR+VK+F   ++G     R +               + I KK + P  ++V+ N 
Sbjct: 238 FHSLEDRIVKRFMRMQTGTDTLPRRLPIREEESRLHNQQKLRIIGKK-IRPGSDEVSANP 296

Query: 305 RSRSAKLRAGMRTVERSI 322
           R+RSA +R   +   R+ 
Sbjct: 297 RARSAVMRVAEKLETRNA 314


>gi|26988063|ref|NP_743488.1| S-adenosyl-methyltransferase MraW [Pseudomonas putida KT2440]
 gi|38258006|sp|Q88N84|RSMH_PSEPK RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|24982787|gb|AAN66952.1|AE016324_2 conserved hypothetical protein TIGR00006 [Pseudomonas putida
           KT2440]
          Length = 315

 Score =  356 bits (914), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 114/308 (37%), Positives = 174/308 (56%), Gaps = 12/308 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
           +H+ VLL++ +  L        LD TFG GG+SR           ++  D+DP A++ GQ
Sbjct: 8   NHITVLLDEAVEALALRADGCYLDGTFGRGGHSRLILSKLGPQGRLLGFDKDPQAIATGQ 67

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
             +     +F + Q +F++L   V  +G    V GV+ DLGVSS Q+D  +RGFSF   G
Sbjct: 68  A-LAAEDGRFVIVQRSFAELGAEVAARGLHGKVSGVLLDLGVSSPQLDDPERGFSFLNDG 126

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+   G+SA++ +  A V+++ R+    GEE+ A R+A A+V+RR+  PF  T D
Sbjct: 127 PLDMRMNPDQGVSAAEFIATAPVEEIARVFKEYGEERFAGRMARAVVERREKQPFTRTAD 186

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ +++      +  + +PATR+FQ LRI VNNE+ +L  GL +A  AL+ GG L V+SF
Sbjct: 187 LAEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLAVISF 245

Query: 251 HSLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+VK F      G+   +   +P        +  +  K    ++ ++  N RSRS
Sbjct: 246 HSLEDRIVKLFMRKLVKGEADNLPRNLPVQHKVFEPKIKLIGKAQFASEAELKANPRSRS 305

Query: 309 AKLRAGMR 316
           A +R   +
Sbjct: 306 AVMRVAEK 313


>gi|283379446|dbj|BAI66129.1| S-adenosyl-methyltransferase [Neisseria gonorrhoeae]
 gi|283379452|dbj|BAI66134.1| S-adenosyl-methyltransferase [Neisseria gonorrhoeae]
          Length = 314

 Score =  356 bits (914), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 113/312 (36%), Positives = 168/312 (53%), Gaps = 10/312 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H+ VLL + +  L      V +D TFG GG+SR           +I  D+DP A++  +E
Sbjct: 5   HITVLLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFDKDPQAIAVAEE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +    ++  +    F+  Q  +   G   VDG +FDLG+SS QID G RGFSF+   PL
Sbjct: 65  -LARSDKRVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGSRGFSFRFDAPL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  + G+SA++ +  A+ +DL  ++   GEE+ + +I  AIV +R  +P  TT+ L+
Sbjct: 124 DMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIVRAIVAQRAESPIDTTRKLA 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            ++ + V   +  +  PATR+FQA+RIF+N E+EE+   L      LK GG L V++FHS
Sbjct: 184 QIVAQNVRTRERGQ-DPATRTFQAIRIFINRELEEVGAVLPQVMCRLKEGGRLAVIAFHS 242

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK+F    S             A  P     I  + + P + ++A N R+RSA L
Sbjct: 243 LEDRIVKQFVKKYSQHEPLPSWAAVREADLPEPPLKIVGRALKPGEAEIAANPRARSAVL 302

Query: 312 RAGMRTVERSIE 323
           R   RT     E
Sbjct: 303 RVAERTAGPIPE 314


>gi|313500445|gb|ADR61811.1| MraW [Pseudomonas putida BIRD-1]
          Length = 315

 Score =  356 bits (914), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 115/308 (37%), Positives = 174/308 (56%), Gaps = 12/308 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
           +H+ VLL++ +  L        LD TFG GG+SR           ++  D+DP A++ GQ
Sbjct: 8   NHITVLLDEAVEALALRADGCYLDGTFGRGGHSRLILSKLGPQGRLLGFDKDPQAIATGQ 67

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
             +     +F + Q +F++L   V  +G    V GV+ DLGVSS Q+D  +RGFSF   G
Sbjct: 68  A-LAAEDGRFVIVQRSFAELGAEVAARGLHGKVSGVLLDLGVSSPQLDDPERGFSFLNDG 126

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+   GISA++ +  A V+++ R+    GEE+ A R+A A+V+RR+  PF  T D
Sbjct: 127 PLDMRMNPDQGISAAEFIATAPVEEIARVFKEYGEERFAGRMARAVVERREKQPFTRTAD 186

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ +++      +  + +PATR+FQ LRI VNNE+ +L  GL +A  AL+ GG L V+SF
Sbjct: 187 LAEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLAVISF 245

Query: 251 HSLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+VK F      G+   +   +P        +  +  K    ++ ++  N RSRS
Sbjct: 246 HSLEDRIVKLFMRKLVKGEADNLPRNLPVQHKAFEPKIKLIGKAQFASEAELKANPRSRS 305

Query: 309 AKLRAGMR 316
           A +R   +
Sbjct: 306 AVMRVAEK 313


>gi|282880611|ref|ZP_06289317.1| S-adenosyl-methyltransferase MraW [Prevotella timonensis CRIS
           5C-B1]
 gi|281305506|gb|EFA97560.1| S-adenosyl-methyltransferase MraW [Prevotella timonensis CRIS
           5C-B1]
          Length = 312

 Score =  356 bits (914), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 110/309 (35%), Positives = 166/309 (53%), Gaps = 17/309 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC--- 73
           HVPVLLE+ I  LN  P  + +DATFG GG+S           ++ + D+D  A      
Sbjct: 10  HVPVLLEQSIEGLNIHPEGIYVDATFGGGGHSMEILSHLNEKGHLFSFDQDLDAEKNIQQ 69

Query: 74  -GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQK 129
            G E +   ++ F+  ++ F  L++++    +   DG++ DLGVSS   D  +RGFSF+ 
Sbjct: 70  EGHEVL--LQDNFTFIRSNFRYLKNWMRYYKIEKIDGILADLGVSSHHFDDENRGFSFRF 127

Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM+  + ++A+DV+N  N + L  I  + GE K A RIA  +VK R      +T
Sbjct: 128 DAPLDMRMNTKASLTAADVINTYNEEQLADIFYLYGELKNARRIASLLVKARSQKNITST 187

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            DL   ++    F K        + FQALRI VN+E+E L + L SA++ L  GG L+V+
Sbjct: 188 HDLIQAVEAV--FGKVREKKDLAKLFQALRIEVNHEMEALKELLNSAQELLTTGGRLVVI 245

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           ++HSLEDR+VK    + + +    +           F+ +  KV+ PT ++   N RSRS
Sbjct: 246 TYHSLEDRMVKNIMKTGNVQGKVQQDFF--GRIETTFKLLNNKVITPTPQEQQENPRSRS 303

Query: 309 AKLRAGMRT 317
           AKLR   + 
Sbjct: 304 AKLRIAEKI 312


>gi|333029398|ref|ZP_08457459.1| Ribosomal RNA small subunit methyltransferase H [Bacteroides
           coprosuis DSM 18011]
 gi|332739995|gb|EGJ70477.1| Ribosomal RNA small subunit methyltransferase H [Bacteroides
           coprosuis DSM 18011]
          Length = 305

 Score =  356 bits (914), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 104/304 (34%), Positives = 159/304 (52%), Gaps = 16/304 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H+PVLL + I  LN  P  + +D TFG GG+S+          ++ + D+D  A     +
Sbjct: 10  HIPVLLNESINGLNIDPQGIYVDVTFGGGGHSKEILSHLAPTGHLFSFDQDKDAEKNSFQ 69

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +F+  ++ F  +++++    V    G++ DLGVSS   D  +RGFSF+    L
Sbjct: 70  -----DSRFTFVRSNFRYIKNFLQYYHVTEVSGILADLGVSSHHFDESERGFSFRFDADL 124

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  +  +A+D+VN  + + L  +  + GE K + RIA  IVK R   P +T     
Sbjct: 125 DMRMNTRASKTAADIVNNYSQEQLADVFYLYGELKNSRRIASKIVKYRAENPIKTIAQFI 184

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I  T  F    +     + FQALRI VN E+E L + L SA   LK GG L V+++HS
Sbjct: 185 EVI--TPLFGPQRQKKDFAKVFQALRIEVNEEMEALREMLISAIGLLKPGGRLAVITYHS 242

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK  F + + +    +        P   ++I  KV++PT ++   N RSRSAKLR
Sbjct: 243 LEDRMVKNLFKTGNIEGKLNKDFYGKIISP--IKAINNKVIIPTDQEQELNPRSRSAKLR 300

Query: 313 AGMR 316
              +
Sbjct: 301 IAEK 304


>gi|300741256|ref|ZP_07071277.1| S-adenosyl-methyltransferase MraW [Rothia dentocariosa M567]
 gi|300380441|gb|EFJ77003.1| S-adenosyl-methyltransferase MraW [Rothia dentocariosa M567]
          Length = 359

 Score =  356 bits (914), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 117/308 (37%), Positives = 178/308 (57%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCG 74
           HVPV+L++ + LL P       V++D T G GG++ +  +  SN+  I +DRD  A +  
Sbjct: 48  HVPVMLDRCLELLEPAISRQDAVVIDGTLGMGGHTEAMLERFSNLTVIGIDRDAQAHAIA 107

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            E +  +  +F      +  ++D +   GV   DGV+ DLGVSSMQ+D   RGF++    
Sbjct: 108 AERLARFGNRFVPVHTVYDHIEDAMSAAGVTSVDGVLLDLGVSSMQLDERSRGFAYSYDA 167

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+    ++A  VVN+ +   L RI+   GEEK A+RIA  IV++R+  PF TT +
Sbjct: 168 PLDMRMNGDDELTARIVVNEYSENQLRRIIKNWGEEKFAARIAQHIVEQRKHTPFTTTGE 227

Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L + IQK V  + +    HPA R+FQALRI VN+E+E L + + +A  AL+ GG  + +S
Sbjct: 228 LVAAIQKAVPAAAQRKGGHPAKRTFQALRIEVNHELEALERAVPAALDALRLGGRFVAMS 287

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           +HSLED++VK+     +         +  + H    + IT+    PT+ ++A N R+ SA
Sbjct: 288 YHSLEDKIVKRALTEAATSKAPKGFPVELDEHQPTIRVITRGAEPPTEAEIAENPRAASA 347

Query: 310 KLRAGMRT 317
           KLRAG + 
Sbjct: 348 KLRAGEKI 355


>gi|302335888|ref|YP_003801095.1| S-adenosyl-methyltransferase MraW [Olsenella uli DSM 7084]
 gi|301319728|gb|ADK68215.1| S-adenosyl-methyltransferase MraW [Olsenella uli DSM 7084]
          Length = 323

 Score =  356 bits (914), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 109/309 (35%), Positives = 175/309 (56%), Gaps = 12/309 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HVPV++++VIA L+P PG+ + D T G  G++    +        + +D+D  A+     
Sbjct: 7   HVPVMIDEVIAELDPRPGETVCDCTLGGAGHTLEMARRIQPDGLSLGIDQDDMALDAASA 66

Query: 77  TMRDYKE--QFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                    +    +  F+ L D +      GVD  +FD+GVSS Q+D  +RGFS+ +  
Sbjct: 67  RFERELPTARRRFLKGNFASLDDLLVQAEVPGVDCFLFDIGVSSPQLDIPERGFSYHEDA 126

Query: 132 PLDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
           PLDMRM    + ++A++V N  N  DL RIL + G+E+ A+RIA  IV+ R+ AP +TT 
Sbjct: 127 PLDMRMGPGDNTLTAAEVTNSYNEADLARILRVYGDERNATRIARQIVRTREKAPIETTL 186

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L  +I+  +  + + +  HPA ++FQALRI VN+E++ L QGLR+A +    GG + V+
Sbjct: 187 QLVEVIKAAIPAAGRRHGGHPARKTFQALRIEVNHELDALDQGLRAAVRWANTGGRICVI 246

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           S+HSLEDR+VK  F   S   +      + +  H  +    T++ +V +  +VA N R+R
Sbjct: 247 SYHSLEDRIVKHVFTELSQGCVCPPDLPVCACGHVPIVDVRTRRPLVASDAEVARNPRAR 306

Query: 308 SAKLRAGMR 316
           SA +R  ++
Sbjct: 307 SALMRVAVK 315


>gi|255320234|ref|ZP_05361419.1| S-adenosyl-methyltransferase MraW [Acinetobacter radioresistens
           SK82]
 gi|262380450|ref|ZP_06073604.1| MraW methylase [Acinetobacter radioresistens SH164]
 gi|255302673|gb|EET81905.1| S-adenosyl-methyltransferase MraW [Acinetobacter radioresistens
           SK82]
 gi|262297896|gb|EEY85811.1| MraW methylase [Acinetobacter radioresistens SH164]
          Length = 303

 Score =  356 bits (914), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 110/308 (35%), Positives = 164/308 (53%), Gaps = 16/308 (5%)

Query: 20  HVPVLLEKVIAL-LNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
           H+ VLL + +A  L      + +DATFG GG+SR         + V A D+DP A++   
Sbjct: 3   HISVLLHETVAAVLAERNTGIYVDATFGRGGHSRELLAQLNTDAQVYAFDKDPQALAVAA 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E +     +F +  A+F+ L+  +   G   VDG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 63  E-LEQQDARFKIIHASFADLKQELEKIGITEVDGIMADLGVSSPQLDQAERGFSFMQDGP 121

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G +A++ +     + L  I+   GEE+ + R+A AI +        TT  L
Sbjct: 122 LDMRMDNSQGQTAAEWLVNIEEEALANIIYQYGEERYSRRLARAIKQA---GYIATTGQL 178

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + L++      + ++ HPATR+FQA+RI +N E+E++   L  A   LK  G L V+SFH
Sbjct: 179 AELVKAAHPKWEKHK-HPATRTFQAIRIAINKELEDIELFLPQAVDILKPHGRLAVISFH 237

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPS-NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDRL+K+F    S         +P         + I++  +  +  +V  N RSRSA 
Sbjct: 238 SLEDRLIKQFIQKESSLAEDSGWGMPQIQQDTRRLKKISR--IKASDAEVKENPRSRSAW 295

Query: 311 LRAGMRTV 318
           LR   R  
Sbjct: 296 LRVAERLA 303


>gi|212635034|ref|YP_002311559.1| S-adenosyl-methyltransferase MraW [Shewanella piezotolerans WP3]
 gi|262826550|sp|B8CM48|RSMH_SHEPW RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|212556518|gb|ACJ28972.1| S-adenosyl-methyltransferase mraW [Shewanella piezotolerans WP3]
          Length = 318

 Score =  356 bits (914), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 117/308 (37%), Positives = 173/308 (56%), Gaps = 13/308 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
           +H+ VLL + +A LN     + +D TFG GG+SR   +       +IA+DRDP A+    
Sbjct: 6   EHLSVLLTETVAGLNIREDGIYIDGTFGRGGHSRKVLEQLGPNGRLIAIDRDPQAILAA- 64

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           E  +D   +F +    F QL  YV + G    +DGV+ D GVSS Q+D  +RGFSF + G
Sbjct: 65  EQFKD-DSRFQIVHGGFGQLAQYVEELGLKGKIDGVLLDFGVSSPQLDDAERGFSFLRDG 123

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  S G +A+  + +A ++D+  +    GEEK +  IA  I   R+  PF  T++
Sbjct: 124 PLDMRMDNSQGQTAAQWIARAEIEDMAWVFKTYGEEKNSRHIARCIAADREKTPFLRTKE 183

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ LI +     + N+ HPATR FQA+RI++N+E+E++ Q L  A   L   G L V+SF
Sbjct: 184 LADLIARITKNKERNK-HPATRVFQAIRIYINSELEQIDQALEGALTVLAPEGRLSVISF 242

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI--TKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+VK+F    S        +  + A     + +    K + P+ E++  N R+RS
Sbjct: 243 HSLEDRMVKRFIRRHSQGESVPHGLPITEAEINKSRKLKGIGKAIKPSAEEIERNARARS 302

Query: 309 AKLRAGMR 316
           + LR G R
Sbjct: 303 SVLRIGER 310


>gi|71281391|ref|YP_271121.1| S-adenosyl-methyltransferase MraW [Colwellia psychrerythraea 34H]
 gi|88909194|sp|Q47VQ1|RSMH_COLP3 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|71147131|gb|AAZ27604.1| S-adenosyl-methyltransferase MraW [Colwellia psychrerythraea 34H]
          Length = 316

 Score =  356 bits (913), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 120/314 (38%), Positives = 180/314 (57%), Gaps = 14/314 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H+ VLL + +  L        +D TFG GG+S            +IA+DRDP A++   E
Sbjct: 7   HISVLLNEAVDGLAITDDGCYIDCTFGRGGHSSVILSKLSDNGRLIAIDRDPTAITAA-E 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +D  ++F +    F+ L +          VDG++ DLGVSS Q+D  +RGFSF K GP
Sbjct: 66  KFKD-DKRFLIEHQGFAALAEIAEKHELTGKVDGILLDLGVSSPQLDEAERGFSFMKDGP 124

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G +A++ +  A+V+D+T +L   GEEK A RIA+AIV  R+  P   T  L
Sbjct: 125 LDMRMDTSKGQTAAEWLAVADVEDITWVLRTFGEEKHAWRIANAIVDTREETPLTRTSQL 184

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI+ T    +  + HPATRSFQA+R+++N+E++++ + L ++   L  GG L+V+SFH
Sbjct: 185 AKLIKTTAP-QREIKKHPATRSFQAIRMYINSELDQIEKALVASLDVLAEGGRLVVISFH 243

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT--KKVVVPTQEDVAFNRRSRSA 309
           SLEDRLVK+F    S      R +  S       + ++   + + P+Q +V  N RSRS+
Sbjct: 244 SLEDRLVKQFMKKHSQGKKVPRGLPISEIELNKGKKLSLVGRRLKPSQTEVEENVRSRSS 303

Query: 310 KLRAGMRTVERSIE 323
            LR   R +ER+ +
Sbjct: 304 VLRVAER-LERNTD 316


>gi|256390851|ref|YP_003112415.1| S-adenosyl-methyltransferase MraW [Catenulispora acidiphila DSM
           44928]
 gi|256357077|gb|ACU70574.1| S-adenosyl-methyltransferase MraW [Catenulispora acidiphila DSM
           44928]
          Length = 316

 Score =  356 bits (913), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 128/314 (40%), Positives = 181/314 (57%), Gaps = 10/314 (3%)

Query: 16  TIGDHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFA 70
           T   H+PV+LE+ + +L P    PG V+LDAT G GG+S +F +      +I LDRDP A
Sbjct: 2   TSATHIPVMLERCVEILGPALERPGAVVLDATLGLGGHSEAFLRRFPDVRLIGLDRDPQA 61

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSF 127
           +      +  + E+ +L  A + ++ D +   GV    G +FDLGVSS+Q+D  +RGF++
Sbjct: 62  LEASGRRLAPFGERATLVHAVYDEIPDVLERLGVAELSGTLFDLGVSSLQLDMRERGFAY 121

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
               PLDMRM  S GI+A+D+VN     D+ RIL   GEE+ A RIA  IV  R+  PF 
Sbjct: 122 SYDAPLDMRMDSSRGITAADIVNTYPAADIARILRDYGEERFARRIADRIVAEREKEPFT 181

Query: 187 TTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           TT  LS L++ ++  + +    HPA R+FQALRI VN+E+  L + L +A  A   GG +
Sbjct: 182 TTARLSDLVRDSIPAATRRTGGHPAKRAFQALRIAVNDELPVLERALPAAVAATGLGGRI 241

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
            V+S+HSLEDRLVK+ FA  S         +    +   F+ +T+    PT  + A N R
Sbjct: 242 AVLSYHSLEDRLVKRVFAKASESAAPPGLPVVPEQYQPKFRLLTRGAEPPTDAETAENPR 301

Query: 306 SRSAKLRAGMRTVE 319
           + SAKLRA  R  E
Sbjct: 302 AASAKLRAAERVRE 315


>gi|157368998|ref|YP_001476987.1| S-adenosyl-methyltransferase MraW [Serratia proteamaculans 568]
 gi|262826478|sp|A8G9R9|RSMH_SERP5 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|157320762|gb|ABV39859.1| S-adenosyl-methyltransferase MraW [Serratia proteamaculans 568]
          Length = 313

 Score =  356 bits (913), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 121/309 (39%), Positives = 171/309 (55%), Gaps = 15/309 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H  VLL++ +  LN       +D TFG GG+SR           ++A+DRDP A++  +
Sbjct: 6   KHTTVLLDEAVNGLNIRSNGTYIDGTFGRGGHSRLILSQLGPEGRLLAIDRDPQAIAAAK 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +FS+    FS L  YV ++     +DG++ DLGVSS Q+D  +RGFSF + G
Sbjct: 66  SI---EDPRFSIVHGPFSDLSHYVRERELVGQIDGILLDLGVSSPQLDDAERGFSFMRDG 122

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  S G SAS+ + +A   D+  +L   GEE+ A RIA AIV+R Q  P   T+ 
Sbjct: 123 PLDMRMDSSSGQSASEWLMKAEADDIAWVLKTFGEERFAKRIARAIVERNQVDPMTRTKQ 182

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ LI     F ++   HPATRSFQA+RI++N+E+EE+ + L  A + L   G L V+SF
Sbjct: 183 LADLIANASPF-RDKHKHPATRSFQAIRIYINSELEEIERALDGALEVLAPQGRLSVISF 241

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNRRSR 307
           HSLEDR+VK+F    S        +  + A        T K +   +P   +VA N R+R
Sbjct: 242 HSLEDRIVKRFMRHHSRGAQVPAGIPLTEAQLRSMGGRTLKALGKMMPGDAEVAENPRAR 301

Query: 308 SAKLRAGMR 316
           S+ LR   R
Sbjct: 302 SSVLRIAER 310


>gi|197334561|ref|YP_002157005.1| S-adenosyl-methyltransferase MraW [Vibrio fischeri MJ11]
 gi|263504510|sp|B5FB43|RSMH_VIBFM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|197316051|gb|ACH65498.1| S-adenosyl-methyltransferase MraW [Vibrio fischeri MJ11]
          Length = 316

 Score =  356 bits (913), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 118/312 (37%), Positives = 166/312 (53%), Gaps = 18/312 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           HV VLL + I  L   P  + +D TFG GG+SR           + ++DRDP A++  + 
Sbjct: 7   HVSVLLHESIDGLAIKPDGIYIDGTFGRGGHSRQILSQLGENGRLYSIDRDPQAIAEAKT 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  +F++    FS L+ YV +      +DGV+ DLGVSS Q+D  +RGFSF K GP
Sbjct: 67  I---TDPKFTIIHGPFSGLKQYVEELELVGKIDGVLLDLGVSSPQLDDAERGFSFMKDGP 123

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---PFQTT 188
           LDMRM   SGI  S  + +A+V+D+T ++   GE+K A RIA  IV  R++    P   T
Sbjct: 124 LDMRMDPTSGIPVSQWLQEADVEDITWVIREFGEDKHAWRIAKGIVAYRENEENEPLTRT 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ LI +    S   + HPATR+FQA RI++N+E++E+   L+ A   L   G L V+
Sbjct: 184 SQLAKLISEVAPKSFKEKKHPATRAFQAFRIYINSELDEIDTALKGALDVLAPEGRLSVI 243

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVVVPTQEDVAFNR 304
           SFHSLEDR+VK F    S        +  +                K + PT+ +V  N 
Sbjct: 244 SFHSLEDRMVKHFIRKESKGPQVPHGLPLTEEQIKALGSAKMKPVGKAIKPTKNEVDVNV 303

Query: 305 RSRSAKLRAGMR 316
           RSRS+ LR   R
Sbjct: 304 RSRSSVLRIAER 315


>gi|325102881|ref|YP_004272535.1| S-adenosyl-methyltransferase MraW [Pedobacter saltans DSM 12145]
 gi|324971729|gb|ADY50713.1| S-adenosyl-methyltransferase MraW [Pedobacter saltans DSM 12145]
          Length = 302

 Score =  356 bits (913), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 115/305 (37%), Positives = 165/305 (54%), Gaps = 16/305 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           HVPV+L + I  L+  P  V +D TFG GG+SR   K       ++A D+D  A      
Sbjct: 6   HVPVMLSECIEGLDIKPDGVYVDVTFGGGGHSREIIKHLGEDGVLVAFDQDVDAQQN--- 62

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             R   ++F      F  L++ +   G   VDG++ DLGVSS Q D  +RGFS +  G L
Sbjct: 63  --RIADDRFVFIDQNFRYLKNNLRLHGLAPVDGILADLGVSSHQFDVPERGFSIRFDGDL 120

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  SG ++A  V+ + + ++L +I GI GE + A  +A  IV  R +    T +DL 
Sbjct: 121 DMRMDQSGELTAKKVIGEYSEEELHKIFGIYGEIQNARSLAKTIVTARLNKEIVTIEDLK 180

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           S I K +  +K N+     + FQALRI VN E+E L + L  A + LK GG L+V+S+HS
Sbjct: 181 SAIAKLIPRNKENK--YLAQVFQALRIEVNQEMEVLKEFLEQAAEVLKPGGRLVVMSYHS 238

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDRLVK F           +    +   P  F  +TKK +  ++E++  N RSRSA+LR
Sbjct: 239 LEDRLVKNFMMKGKFSGQVEKDFYGNEIKP--FTVLTKKSITASEEELLRNNRSRSARLR 296

Query: 313 AGMRT 317
             ++ 
Sbjct: 297 IAVKN 301


>gi|32129733|sp|Q87AF2|RSMH_XYLFT RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263506475|sp|B2I9C0|RSMH_XYLF2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 313

 Score =  356 bits (913), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 115/305 (37%), Positives = 170/305 (55%), Gaps = 10/305 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HVPVL  + +  L        LD TFG GG++R   +    G  ++ +D+DP A++   E
Sbjct: 3   HVPVLYTQAMEGLRVVENGTYLDGTFGRGGHARGVLQQLGPGGRLLVMDKDPEAIAMA-E 61

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
                  +  +   +F+ L      + +DGV+FDLGVSS Q+D  +RGFSF K GPLDMR
Sbjct: 62  RAFSCDPRVVIRHGSFALLAQLAAPQSLDGVLFDLGVSSPQLDVPERGFSFAKDGPLDMR 121

Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M    G SA+  + + + +++  +L   GEEKQ+ RIA AIV  R + P   T  L+ LI
Sbjct: 122 MDPEMGESAAQWLARVSEREIADVLWTYGEEKQSRRIARAIVAYRANQPLLRTVQLAELI 181

Query: 196 QKTVYFSK----NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
              +  +K     +RIHPATRSFQ +RI VN E+ +L  GL +A  AL+ GG L+V+SFH
Sbjct: 182 ASVMLRTKFGACKSRIHPATRSFQGIRIHVNRELVDLEVGLEAALAALRPGGRLVVISFH 241

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+VK+F +  S      R +        + + I +  +   ++++  N R+RSA L
Sbjct: 242 SLEDRIVKQFISRHSKVPPTNRRLPEVQTFVPLLRMIGR-AIKADEDELEVNPRARSAVL 300

Query: 312 RAGMR 316
           R   +
Sbjct: 301 RVAEK 305


>gi|269104116|ref|ZP_06156813.1| S-adenosyl-methyltransferase MraW [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268164014|gb|EEZ42510.1| S-adenosyl-methyltransferase MraW [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 315

 Score =  356 bits (913), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 116/313 (37%), Positives = 176/313 (56%), Gaps = 19/313 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
           +HV VLL + +  L   P  + +D TFG GG+SR           + ++DRDP A++  Q
Sbjct: 6   EHVSVLLHESVDGLAIKPDGIYIDGTFGRGGHSRLILSKLGENGRLYSIDRDPQAIAEAQ 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +       +F++    FS ++ Y+ ++     VDG++ DLGVSS Q+D  +RGFSF + G
Sbjct: 66  KI---DDPRFNIIHGPFSGMEKYMEERDLIGRVDGILLDLGVSSPQLDDAERGFSFMRDG 122

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ---SAPFQT 187
           PLDMRM   SG +AS+ +  A+  D+  +L   GEE+ A RIA  IV+ R+     P   
Sbjct: 123 PLDMRMDPTSGQAASEWLATADASDIAWVLKEFGEERFAKRIARGIVEHREDPEKEPLTR 182

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T  L++LI +   F K+   HPATRSFQA+RI++N+E++E+A  L  A   L  GG L V
Sbjct: 183 TLQLANLIAQVSPF-KDKHKHPATRSFQAIRIYINSELDEIATALNGAVNILAPGGRLSV 241

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVVVPTQEDVAFN 303
           +SFHSLEDR+VK+F  ++S        +  +             +  K + P+Q ++ +N
Sbjct: 242 ISFHSLEDRMVKRFMRNKSKGPEIPAGLPLTEEQIKALGSADLKLASKAIKPSQNELGYN 301

Query: 304 RRSRSAKLRAGMR 316
            R+RS+ LR   R
Sbjct: 302 ARARSSVLRLAER 314


>gi|218258181|ref|ZP_03474583.1| hypothetical protein PRABACTJOHN_00237 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225704|gb|EEC98354.1| hypothetical protein PRABACTJOHN_00237 [Parabacteroides johnsonii
           DSM 18315]
          Length = 310

 Score =  356 bits (913), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 106/304 (34%), Positives = 160/304 (52%), Gaps = 17/304 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           HVPV+L + +  L   P  V +D TFG GG+SR           +   D+D  A     E
Sbjct: 9   HVPVMLHESLEGLGIQPSGVYVDVTFGGGGHSREILNRLDNEGTLYGFDQDADA-----E 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  +F   ++ F  L +++   GV    DG++ DLGVSS   D  DRGFSF+  G 
Sbjct: 64  KNIPADSRFVFVRSNFRYLYNFMRYHGVAGEVDGLLADLGVSSHHFDDKDRGFSFRFDGA 123

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+  +G +A+D+VN    + L  +  + GE K A ++A  +V+ R+    +T  D 
Sbjct: 124 LDMRMNTRAGQTAADIVNTYTEEQLADLFYLYGELKVARKLASVLVRSREIKKIETIADF 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             +I+      K+       + FQALRI VN+E+  L + L+   + LK GG L+V+++H
Sbjct: 184 LEVIKPFT--GKDKEKKFLAQVFQALRIEVNDEMRALREMLQQTLQVLKPGGRLVVITYH 241

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDRLVK F  + + +  A +         + F+ +  KV+VP+ E++  N RSRSAKL
Sbjct: 242 SLEDRLVKNFLKTGNFEGKAEQDFF--GNIKSPFRLVNNKVIVPSGEEIERNPRSRSAKL 299

Query: 312 RAGM 315
           R   
Sbjct: 300 RIAE 303


>gi|190572794|ref|YP_001970639.1| S-adenosyl-methyltransferase MraW [Stenotrophomonas maltophilia
           K279a]
 gi|262826755|sp|B2FNN0|RSMH_STRMK RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|190010716|emb|CAQ44325.1| putative S-adenosyl-methyltransferase mraW [Stenotrophomonas
           maltophilia K279a]
          Length = 322

 Score =  355 bits (912), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 122/310 (39%), Positives = 180/310 (58%), Gaps = 8/310 (2%)

Query: 12  AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDP 68
            +  +   H+PVL  +V+  L        LD TFG GG++R           ++ +D+DP
Sbjct: 11  PVSQSPAVHLPVLYTQVLEGLRVIENGRYLDGTFGRGGHARGVLTQLGPEGRLLVMDKDP 70

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDY-VPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
            A++  +        + S+F+ +F+QL  +    +G+DGV+FDLGVSS Q+D  +RGFSF
Sbjct: 71  EAIAVAERDFAP-DPRVSIFRGSFAQLLQWDATAEGLDGVLFDLGVSSPQLDVAERGFSF 129

Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
            K GPLDMRM   SG SA+  +N+   +++  +L   GEE+Q+ RIA AIV RR+  PF 
Sbjct: 130 GKDGPLDMRMDPDSGESAAQWINRVEEREIADVLWTYGEERQSRRIARAIVARREKQPFS 189

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
            T +L+ LI   +   K ++IHPATRSFQA+RI +N E+ +L  GL +A + LK GG L 
Sbjct: 190 RTAELAELIASVMPRGK-DKIHPATRSFQAIRIHINRELADLEAGLDAAVERLKPGGRLA 248

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+SFHSLEDR+VK++    +    A R +  + A       I    +  T E++A N R+
Sbjct: 249 VISFHSLEDRIVKQYMNRLAKAPPANRRLPEAVAFVPTLDLI-GGAIKATDEELAANPRA 307

Query: 307 RSAKLRAGMR 316
           RSA LR   +
Sbjct: 308 RSAVLRVAQK 317


>gi|299142294|ref|ZP_07035427.1| S-adenosyl-methyltransferase MraW [Prevotella oris C735]
 gi|298576383|gb|EFI48256.1| S-adenosyl-methyltransferase MraW [Prevotella oris C735]
          Length = 315

 Score =  355 bits (912), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 110/310 (35%), Positives = 167/310 (53%), Gaps = 17/310 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           HVPVLL+  +  LN   G + +D TFG GG+SR         +++ + D+D  A      
Sbjct: 9   HVPVLLKPSVDGLNIQSGGIYVDVTFGGGGHSREILSRLDNQAHLYSFDQDADAEQNVMH 68

Query: 77  TMRD------YKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSF 127
                        +F+  ++ F  L++++   GV   DG++ DLGVSS   D   RGFSF
Sbjct: 69  REGSTEKRFVDDARFTFVRSNFRYLKNWMRYYGVEKIDGLLADLGVSSHHFDDESRGFSF 128

Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           +   PLDMRM+  +G++A+DVVN  N + L  +  + GE KQ+ RIA A++K R      
Sbjct: 129 RFDAPLDMRMNKRAGLTAADVVNDYNEEALANLFYLYGELKQSRRIAAALIKARAQQRIA 188

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           TTQD     +    F +        + FQALRI VN+E++ L + L+SA + L++GG L 
Sbjct: 189 TTQDFLKATEPL--FKREREKKDMAKLFQALRIEVNHEMDALKEMLQSATELLRSGGRLS 246

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+++HSLEDR+VK    + + +   V+        P  F  +  KV+VP+ ++   N RS
Sbjct: 247 VITYHSLEDRIVKNMMKAGNAEGKKVQDFYGRIETP--FNLVNNKVIVPSADEQQENPRS 304

Query: 307 RSAKLRAGMR 316
           RSAKLR   +
Sbjct: 305 RSAKLRIAEK 314


>gi|312131313|ref|YP_003998653.1| s-adenosyl-methyltransferase mraw [Leadbetterella byssophila DSM
           17132]
 gi|311907859|gb|ADQ18300.1| S-adenosyl-methyltransferase MraW [Leadbetterella byssophila DSM
           17132]
          Length = 301

 Score =  355 bits (912), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 110/303 (36%), Positives = 162/303 (53%), Gaps = 15/303 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77
           H PV+L + +  LN  P  + +D TFG GG+SR   K     ++   D+D  A     + 
Sbjct: 6   HKPVMLTECLQGLNIRPDGIYVDVTFGGGGHSREILKHLTTGHLYGFDQDADAQEQASKI 65

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
                  F+  +A F  ++ Y+   GV   DG++ DLG+SS QID  +RGFS +  G LD
Sbjct: 66  SSP---NFTFIRANFRNIRKYLKIYGVSKVDGILADLGISSHQIDTPERGFSTRFDGELD 122

Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM+ S GISA +VVN+    +L +I G+ GE K A  +A AI    +     T QDL  
Sbjct: 123 MRMNTSTGISAKEVVNEYAEDELHKIFGMYGELKNARSVARAI--ALEKGNIHTVQDLKD 180

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
            ++      K N+ +   + FQALRI VN E++ L + L    + L  GG L+V+S+HSL
Sbjct: 181 TLKHLAPRGKENKFY--AQVFQALRIEVNEELKVLEEFLLQVPEVLAPGGRLVVMSYHSL 238

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           EDR VK F  S        + +  +   P   Q++T+K V  ++ ++A N R+RSAKLR 
Sbjct: 239 EDRPVKNFIRSGKFYGEVEKDLFGNEIKP--LQAVTRKAVEASEAEIAENPRARSAKLRI 296

Query: 314 GMR 316
             +
Sbjct: 297 AEK 299


>gi|229588482|ref|YP_002870601.1| S-adenosyl-methyltransferase MraW [Pseudomonas fluorescens SBW25]
 gi|262825100|sp|C3KCS2|RSMH_PSEFS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|229360348|emb|CAY47205.1| S-adenosyl-methyltransferase [Pseudomonas fluorescens SBW25]
          Length = 315

 Score =  355 bits (912), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 116/308 (37%), Positives = 178/308 (57%), Gaps = 12/308 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
           +H+ VLL++ +  L        LD TFG GG+SR           ++  D+DP A++ GQ
Sbjct: 8   NHITVLLDEAVEALAVRADGCYLDGTFGRGGHSRLILSQLGSDGKLLGFDKDPQAIATGQ 67

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
             +     +F + Q +F++L   V ++G    V GV+ DLGVSS Q+D  +RGFSF   G
Sbjct: 68  A-LAAEDGRFVVVQRSFAELGAEVAERGMAGKVAGVLLDLGVSSPQLDDPERGFSFMNDG 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + G+SA+  +  A V+++ R+    GEE+ A R+A A+V+RR+  PF+ T D
Sbjct: 127 PLDMRMDPTRGVSAAQFIATAPVEEIARVFKEYGEERFAGRMARAVVERREIQPFERTAD 186

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ +++      +  + +PATR+FQ LRI VNNE+ +L  GL +A +AL+ GG L+V+SF
Sbjct: 187 LAEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAALEALEVGGRLVVISF 245

Query: 251 HSLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+VK F      G+   +   +P      V +  I  K    ++ ++  N RSRS
Sbjct: 246 HSLEDRIVKLFMRRLVKGESDNLPRNLPVRFEAFVPKIKIHGKAQFASEAELKANPRSRS 305

Query: 309 AKLRAGMR 316
           A +R   +
Sbjct: 306 AVMRVAEK 313


>gi|83319603|ref|YP_424368.1| S-adenosyl-methyltransferase MraW [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
 gi|123535772|sp|Q2SS95|RSMH_MYCCT RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|83283489|gb|ABC01421.1| S-adenosyl-methyltransferase MraW [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
          Length = 309

 Score =  355 bits (912), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 105/310 (33%), Positives = 161/310 (51%), Gaps = 14/310 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
            H+PVLL++ I  LN     + +D T G  G++    K  S    + A+D+D  A+   +
Sbjct: 3   KHIPVLLDESIKYLNIKLNGIYVDCTLGRAGHASEILKRLSQNGFLYAIDQDKTAIGQAK 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E +      F L Q  FS L   +       VDG+++DLGVSS Q+D G RGFS++  GP
Sbjct: 63  EKLEKISNNFFLIQGNFSNLSALLAINHIFSVDGILYDLGVSSPQLDIGSRGFSYRIDGP 122

Query: 133 LDMRMS--CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           LDMRM    + ++A  ++NQ +   +  IL   GEE  A  IA  IV  R   P  +T  
Sbjct: 123 LDMRMDITNNNLTADTIINQYSETQIEDILFKYGEESFAKSIAKKIVLSR---PINSTLQ 179

Query: 191 LSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I+  +       + HPA ++FQALRIF+NNE+  L   L+ A   L + G + V++
Sbjct: 180 LVEVIKSALPQKVLKQKKHPAKKTFQALRIFINNELIVLENSLKQALDLLNSKGRICVIT 239

Query: 250 FHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           FHSLE+++VK  F S +   +     ++       + F+ + KK + P+  ++  N RS 
Sbjct: 240 FHSLEEKIVKNIFNSSTNYFQEQLFNNLPIKANLNSQFKLVIKKPIKPSLLELENNHRSH 299

Query: 308 SAKLRAGMRT 317
           SAKL    + 
Sbjct: 300 SAKLWVIEKN 309


>gi|56551719|ref|YP_162558.1| S-adenosyl-methyltransferase MraW [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|59803046|sp|Q9REQ9|RSMH_ZYMMO RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|56543293|gb|AAV89447.1| S-adenosyl-methyltransferase MraW [Zymomonas mobilis subsp. mobilis
           ZM4]
          Length = 332

 Score =  355 bits (912), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 143/331 (43%), Positives = 198/331 (59%), Gaps = 12/331 (3%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSNVIALDRD 67
           M+S     +  H+PVLL++VI  L+P  G + +D TFGAGGYSR+   K  + VIA DRD
Sbjct: 1   MTS--DSFLAPHIPVLLDEVIEALSPVEGGIYIDGTFGAGGYSRAILEKADTQVIAFDRD 58

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQL---QDYVPDKGVDGVVFDLGVSSMQIDCGDRG 124
           P A+  G   +  YK +  L    FS +    D +  K VDG+VFD+GVSSMQID  +RG
Sbjct: 59  PDAIREGASLVEKYKGRLRLVNDCFSNIGHHLDALDIKTVDGMVFDIGVSSMQIDRPERG 118

Query: 125 FSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           FS Q  GPLDMRM+ +G+SA + +N A  KD+  +L + GEE+Q+ R+A AIV  R   P
Sbjct: 119 FSIQADGPLDMRMAQAGLSAEEFLNNAQEKDIADVLYLYGEERQSRRVARAIVAAR---P 175

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
             TT  L+ +I++++ +   ++  PA   FQA+RI +N E++EL  GL++AE+ LK  G 
Sbjct: 176 LTTTFQLAKVIRQSLGYRPFDKKDPAAHCFQAIRIHLNRELDELKDGLQTAERFLKTKGC 235

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
           L VV+FHSLEDR+VK F    +G+     RH         VF S   + V   + ++A N
Sbjct: 236 LAVVTFHSLEDRIVKHFMREHAGQTGQVSRHQPVIPQQNPVFFSKPARPVRAGETELARN 295

Query: 304 RRSRSAKLRAGMRTVERSIEDDSF--VHLPR 332
            R+RSA LRA  RT     ED S    H+PR
Sbjct: 296 PRARSATLRAVYRTETPFSEDISRPDTHIPR 326


>gi|309379057|emb|CBX22359.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 319

 Score =  355 bits (912), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 121/324 (37%), Positives = 172/324 (53%), Gaps = 13/324 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           MS   ++    H+ VLL + +  L      V +D TFG GG+SR           ++  D
Sbjct: 1   MSETENY---RHITVLLHEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLVVFD 57

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGD 122
           +DP AV+  +E +    ++ S+    F+  Q  + D G   VDG +FDLGVSS QID   
Sbjct: 58  KDPRAVAAAEE-LARSDKRVSVVHGGFASFQTALDDLGIGDVDGALFDLGVSSPQIDDAA 116

Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF+   PLDMRM  + G+SA++ +  A+ +DL  ++   GEE+ + +IA AIV +R 
Sbjct: 117 RGFSFRFDAPLDMRMDTTRGMSAAEWIASASEQDLHEVIKNYGEERFSRQIARAIVAQRA 176

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
             P  TT+ L+ L  + V   +  +  PATR+FQA+RIF+N E+EE+   L      LK 
Sbjct: 177 ENPIDTTRKLAQLAAQNVRTRERGQ-DPATRTFQAVRIFINRELEEVEAVLPQVMCRLKQ 235

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDV 300
           GG L V++FHSLEDR+VK+F    S      R      A  P     I  K + P   +V
Sbjct: 236 GGRLAVIAFHSLEDRIVKQFVGKYSRHAPLPRWAAVREADLPEPPLKIVGKALKPGGAEV 295

Query: 301 AFNRRSRSAKLRAGMRTVERSIED 324
           A N R+RSA LR   RT      +
Sbjct: 296 AANPRARSAVLRVAERTAGPIPAE 319


>gi|113460496|ref|YP_718560.1| S-adenosyl-methyltransferase MraW [Haemophilus somnus 129PT]
 gi|123031127|sp|Q0I1E1|RSMH_HAES1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|112822539|gb|ABI24628.1| S-adenosyl-methyltransferase [Haemophilus somnus 129PT]
          Length = 319

 Score =  355 bits (911), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 123/326 (37%), Positives = 175/326 (53%), Gaps = 24/326 (7%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALD 65
           M         +H  VLL + +  L      + +D TFG GG+SR      S    +IA+D
Sbjct: 1   MQDTFSSP--EHFTVLLREAVGGLALKENGIYIDGTFGRGGHSRFILSQLSKKGQLIAID 58

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCG 121
           RDP A+   Q        +F +   +FS + D     G    +DG++ DLGVSS Q+D  
Sbjct: 59  RDPQAIQVAQNI---QDSRFRIVHDSFSAIPDICEKLGLTGKIDGILLDLGVSSPQLDNA 115

Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF K GPLDMRM  + G+SA++ +   + +DL  +L   GEE+ A RIA AIV   
Sbjct: 116 ERGFSFMKDGPLDMRMDTTQGLSATEWLRLVSEQDLAWVLKTFGEERFAKRIAQAIVGYN 175

Query: 181 QS------APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234
           +S       P   T  L+ LI ++V F K+   HPATRSFQA+RIF+N+E++EL + L  
Sbjct: 176 KSAVQSGAEPLNRTLQLAELIAQSVPF-KDKYKHPATRSFQAIRIFINSELDELEKVLNG 234

Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA---HPAVFQSITKK 291
           A   L   G L ++SFHSLEDR+VK F   +S      + +        H    + +  K
Sbjct: 235 ALNVLAPQGRLSIISFHSLEDRMVKHFIRKQSKGDDLPKGLPLREEQIQHNQKLKPV-GK 293

Query: 292 VVVPTQEDVAFNRRSRSAKLRAGMRT 317
            ++PT++++A N RSRSA LR   R 
Sbjct: 294 AIMPTEQEMAANVRSRSAVLRIAERI 319


>gi|163751816|ref|ZP_02159032.1| S-adenosyl-methyltransferase [Shewanella benthica KT99]
 gi|161328301|gb|EDP99462.1| S-adenosyl-methyltransferase [Shewanella benthica KT99]
          Length = 313

 Score =  355 bits (911), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 123/308 (39%), Positives = 177/308 (57%), Gaps = 15/308 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H+ VLL + +A LN     + +D TFG GG+SR   K       +IA+DRDP A+   ++
Sbjct: 7   HLSVLLSETVAGLNIKQDGIYIDGTFGRGGHSREVLKHLGGNGRLIAIDRDPQAIEAAKQ 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              D   +FS+    F QL  YV D G    +DGV+ D GVSS Q+D  +RGFSF + GP
Sbjct: 67  FADD--SRFSIVHGGFGQLATYVEDLGLKGKIDGVLLDFGVSSPQLDDAERGFSFLRDGP 124

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G +A++ + +A ++D+  +    GEEK +  IA  I   RQ  PF  T++L
Sbjct: 125 LDMRMDNSQGETAAEWIARAEIEDMAWVFKTYGEEKNSRHIARCIAADRQKTPFLRTKEL 184

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI +     + N+ HPATR FQA+RI++N+E+E++ Q L  A   L   G L V+SFH
Sbjct: 185 ADLIARICKSKERNK-HPATRVFQAIRIYINSELEQIDQALEGALVVLAPQGRLSVISFH 243

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK---KVVVPTQEDVAFNRRSRS 308
           SLEDR+VK+F   R+ +  +V H +P          + K   K   P+ E+V  N+R+RS
Sbjct: 244 SLEDRMVKRFIR-RNCQGKSVPHGLPITEDELDKTRLLKSIGKATKPSAEEVERNKRARS 302

Query: 309 AKLRAGMR 316
           + LR   R
Sbjct: 303 SILRVAER 310


>gi|254460590|ref|ZP_05074006.1| S-adenosyl-methyltransferase MraW [Rhodobacterales bacterium
           HTCC2083]
 gi|206677179|gb|EDZ41666.1| S-adenosyl-methyltransferase MraW [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 327

 Score =  355 bits (911), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 136/321 (42%), Positives = 192/321 (59%), Gaps = 6/321 (1%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQE 76
             H+PVLL  ++   +P  G   LD TFGAGGY+R+    G++ VIA+DRDP A    Q 
Sbjct: 8   APHIPVLLGPILKAADPISGG-WLDGTFGAGGYTRALLDAGADSVIAVDRDPLAFEMAQP 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
               Y  +    +  FS + ++  D  +DGVV DLGVSSMQ+D  +RGFSF + GPLDMR
Sbjct: 67  WADQYGARLIQQRGVFSDMAEFAQD--LDGVVLDLGVSSMQLDRAERGFSFMRDGPLDMR 124

Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
           M   G SA+D+VN  + +++  IL   GEE+ + RIA AIV+ R   P  TT  L+ LI+
Sbjct: 125 MGQEGQSAADIVNDYDAEEIAEILYNYGEERASRRIARAIVELRAETPITTTLQLAGLIE 184

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
           K +   K  + HPATRSFQALRI VN+E  EL +GL +AE+AL  GGLL +V+FHS+EDR
Sbjct: 185 KCLPRKKPGQSHPATRSFQALRIAVNDEYGELYRGLMAAERALAPGGLLAIVTFHSVEDR 244

Query: 257 LVKKFFASRSGKVMAVRHMIPS-NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           + K+F  SR+G         P  +     F+ +++K +  ++ ++  N R+RSAKLR   
Sbjct: 245 MAKRFLQSRAGTTGNANRFAPQLDVEKPAFELLSRKAITASEFELENNVRARSAKLRLAR 304

Query: 316 RTVERSIE-DDSFVHLPRLPT 335
           RT   + +     + +P L  
Sbjct: 305 RTDAHAGDIAPKTLGMPMLRR 325


>gi|85707758|ref|ZP_01038824.1| S-adenosyl-methyltransferase [Erythrobacter sp. NAP1]
 gi|85689292|gb|EAQ29295.1| S-adenosyl-methyltransferase [Erythrobacter sp. NAP1]
          Length = 313

 Score =  355 bits (911), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 139/312 (44%), Positives = 197/312 (63%), Gaps = 9/312 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQE 76
              H PVLL++V+A + P+P   I+DATFGAGGYSR+  + G+ V A DRDP A+  GQ 
Sbjct: 2   TAPHTPVLLDEVVAAIQPSPDMAIIDATFGAGGYSRALLEKGARVYAFDRDPNAIRDGQG 61

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + ++  + SL    FS +++ +   GV   D VV D+GVSSMQ+D G+RGF+F   GPL
Sbjct: 62  MVAEFDGRLSLHAERFSSMREEMTRIGVPQVDAVVMDIGVSSMQLDQGERGFAFSADGPL 121

Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           DMRMS +G SA+D +N A+   +  +L   GEE+Q+ R+A AIV  R   P +TT DL+ 
Sbjct: 122 DMRMSQAGESAADFLNTADEAAIADVLYQYGEERQSRRVARAIVAAR---PLETTGDLAR 178

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           +++K +    +++  PATRSFQA+RI VN+E+ EL  GL +AE  L+ GG+L VVSFHSL
Sbjct: 179 VVRKALGHKPHDKKDPATRSFQAVRIHVNDELGELRAGLNAAETLLREGGVLAVVSFHSL 238

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           EDR+VK+F    SG   AV   +P      P  F  ++ K + P+  ++  N RSRS+ L
Sbjct: 239 EDRIVKRFLKEASGAGRAVSRHLPGEVPGPPPTFTRVS-KAIRPSGAEIERNPRSRSSIL 297

Query: 312 RAGMRTVERSIE 323
           R  +RT   + E
Sbjct: 298 RHAIRTSAPARE 309


>gi|169794472|ref|YP_001712265.1| S-adenosylmethionine methyltransferase [Acinetobacter baumannii
           AYE]
 gi|184159721|ref|YP_001848060.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii ACICU]
 gi|215482062|ref|YP_002324244.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii
           AB307-0294]
 gi|239501976|ref|ZP_04661286.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii AB900]
 gi|260556905|ref|ZP_05829122.1| MraW methylase [Acinetobacter baumannii ATCC 19606]
 gi|332851366|ref|ZP_08433418.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii 6013150]
 gi|332868777|ref|ZP_08438400.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii 6013113]
 gi|332873764|ref|ZP_08441706.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii 6014059]
 gi|263433333|sp|B7GVN1|RSMH_ACIB3 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263433342|sp|B2I0K7|RSMH_ACIBC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263433359|sp|B0V8N7|RSMH_ACIBY RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263437330|sp|A3M9K5|RSMH_ACIBT RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|169147399|emb|CAM85260.1| S-adenosylmethionine methyltransferase [Acinetobacter baumannii
           AYE]
 gi|183211315|gb|ACC58713.1| predicted S-adenosylmethionine-dependent methyltransferase
           [Acinetobacter baumannii ACICU]
 gi|193078572|gb|ABO13599.2| S-adenosylmethionine methyltransferase [Acinetobacter baumannii
           ATCC 17978]
 gi|213987451|gb|ACJ57750.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii
           AB307-0294]
 gi|260409511|gb|EEX02812.1| MraW methylase [Acinetobacter baumannii ATCC 19606]
 gi|322509634|gb|ADX05088.1| S-adenosylmethionine methyltransferase [Acinetobacter baumannii
           1656-2]
 gi|323519652|gb|ADX94033.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332730082|gb|EGJ61410.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii 6013150]
 gi|332733206|gb|EGJ64403.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii 6013113]
 gi|332737987|gb|EGJ68872.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii 6014059]
          Length = 307

 Score =  355 bits (911), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 110/310 (35%), Positives = 172/310 (55%), Gaps = 16/310 (5%)

Query: 20  HVPVLLEKVIA-LLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
           H+ VLL + +  LL      V +DATFG GG++R         + V A D+DP A+    
Sbjct: 3   HISVLLFETVESLLADRTTGVYIDATFGRGGHTRLLLSKLDENARVYAFDKDPQALEVA- 61

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +     +F++  A+F+ +++ + + GV   DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 62  AALAQEDPRFTIIHASFADIKEKMQEIGVQSVDGIMADLGVSSPQLDQAERGFSFMQDGP 121

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G++A++ + +   +DL  I+   GEE+ + RIA AI +        TT  L
Sbjct: 122 LDMRMDNSKGLTAAEWLLEVEEEDLANIIYQYGEERYSRRIARAIKQA---GKLDTTAQL 178

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + +++      + ++ HPATR+FQA+RI +N E++++   L  A   LK  G L V+SFH
Sbjct: 179 AEIVKTAHPKWEKHK-HPATRTFQAIRIAINKELDDIEVFLPQAVDLLKPKGRLSVISFH 237

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNA-HPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDRL+K+F    S         +P         + I++  V  ++E+V  N RSRSA 
Sbjct: 238 SLEDRLIKQFIQKESTLAEDSGWGMPQQQVDTRRLKKISR--VRASEEEVKANPRSRSAW 295

Query: 311 LRAGMRTVER 320
           LR   R  ++
Sbjct: 296 LRVAERLEQK 305


>gi|221632091|ref|YP_002521312.1| S-adenosyl-methyltransferase MraW [Thermomicrobium roseum DSM 5159]
 gi|262825878|sp|B9L274|RSMH_THERP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|221156426|gb|ACM05553.1| S-adenosyl-methyltransferase MraW [Thermomicrobium roseum DSM 5159]
          Length = 326

 Score =  355 bits (911), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 126/307 (41%), Positives = 171/307 (55%), Gaps = 9/307 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H PVLL   +  L P  G   +DATFG GG+SR+  +       V+A+D DP AV+  + 
Sbjct: 17  HEPVLLSAALTFLAPRDGGRYIDATFGGGGHSRAILEASAPSGQVLAIDADPAAVARARA 76

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
               Y  +       F  L       G   VDG++FDLG+SS Q+    RGFSFQ +GPL
Sbjct: 77  LAERYPGRLLPCHGNFRDLARLAQSYGFVPVDGILFDLGLSSDQLADPARGFSFQLAGPL 136

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMR    SG  A+ +VN  + ++L  +    GEE +A  IA  IV  R   P +TT  L+
Sbjct: 137 DMRFDPTSGEPAAVIVNTWSAEELAELFWQYGEEPRAWAIAQTIVAERARQPIETTTQLA 196

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +L+ + V  S+  RIHPATR FQALRI VN E+E LA GL  A + L+ GG L+V++FHS
Sbjct: 197 ALVAR-VAGSRRERIHPATRVFQALRIAVNQELEALAAGLAQAVELLRPGGRLVVIAFHS 255

Query: 253 LEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDRLVK+FF   +   +      +    H    + +T + V P+ E++  N RSRSA+L
Sbjct: 256 LEDRLVKQFFRREAAACLCPPGTPVCICGHRPRLRLLTPRPVRPSAEEITRNPRSRSARL 315

Query: 312 RAGMRTV 318
           RA  R  
Sbjct: 316 RAAERIA 322


>gi|104783461|ref|YP_609959.1| S-adenosyl-methyltransferase MraW [Pseudomonas entomophila L48]
 gi|122401960|sp|Q1I5B0|RSMH_PSEE4 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|95112448|emb|CAK17175.1| S-adenosylmethionine methyltransferase MraW [Pseudomonas
           entomophila L48]
          Length = 315

 Score =  355 bits (911), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 113/308 (36%), Positives = 173/308 (56%), Gaps = 12/308 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
           +H+ VLL++ +  L        LD TFG GG+SR           ++  D+DP A++ GQ
Sbjct: 8   NHITVLLDEAVEALALRADGCYLDGTFGRGGHSRLILSKLGPQGRLLGFDKDPQAIATGQ 67

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVP----DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
             +     +F + Q +F++L   V        V G++ DLGVSS Q+D  +RGFSF   G
Sbjct: 68  A-LAAEDGRFVIVQRSFAELGAEVAGRDLAGKVSGILLDLGVSSPQLDDPERGFSFLNDG 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+ + GISA++ +  A V+++ R+    GEE+ A R+A A+V+RR+  PF  T D
Sbjct: 127 PLDMRMNPNQGISAAEFIATAPVEEIARVFKEYGEERFAGRMARAVVERREKQPFTRTAD 186

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ +++      +  + +PATR+FQ LRI VNNE+ +L  GL +A  AL+ GG L V+SF
Sbjct: 187 LAEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLETGLEAALDALEVGGRLAVISF 245

Query: 251 HSLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+VK F      G+   +   +P        +  +  K    ++ ++  N RSRS
Sbjct: 246 HSLEDRIVKLFMRKLVKGEADNLPRNLPVQHKTFEPRIKLIGKAQFASEAELKANPRSRS 305

Query: 309 AKLRAGMR 316
           A +R   +
Sbjct: 306 AVMRVAEK 313


>gi|330964049|gb|EGH64309.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 313

 Score =  355 bits (911), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 113/307 (36%), Positives = 175/307 (57%), Gaps = 12/307 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H+ VLLE+ +  L   P    LD TFG GG+SR           ++  D+DP A++ GQ 
Sbjct: 7   HITVLLEEAVEALAVRPDGCYLDGTFGRGGHSRLILSHLGPDGRLLGFDKDPQAIATGQA 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            +     +F + Q +F++L     + G    V G++ DLGVSS Q+D  +RGFSF   GP
Sbjct: 67  -LAAEDGRFVIVQRSFAELGSQAQELGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDGP 125

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G+SA++ +  A  +++ R+    GEE+ A R+A+A+V+RR+  PF+ T DL
Sbjct: 126 LDMRMDPTRGVSAAEFIASAPAEEIARVFKEYGEERFAKRMANAVVQRREIQPFERTADL 185

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + +++      +  + +PATR+FQ LRI VNNE+ +L  GL +A ++L+ GG L+V+SFH
Sbjct: 186 AEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAAMESLEIGGRLVVISFH 244

Query: 252 SLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK F    + G+   +   +P        +  I  K    +  +   N RSRSA
Sbjct: 245 SLEDRIVKLFMRKLAKGEADNMPRNLPIQYKAFEPKIKIHGKAQFASDVETKANPRSRSA 304

Query: 310 KLRAGMR 316
            +R   +
Sbjct: 305 VMRVAEK 311


>gi|291300155|ref|YP_003511433.1| S-adenosyl-methyltransferase MraW [Stackebrandtia nassauensis DSM
           44728]
 gi|290569375|gb|ADD42340.1| S-adenosyl-methyltransferase MraW [Stackebrandtia nassauensis DSM
           44728]
          Length = 336

 Score =  355 bits (911), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 122/327 (37%), Positives = 192/327 (58%), Gaps = 10/327 (3%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGSNV--IA 63
           M +        HVPV  E+V  LL P    P  V +DAT GAGG+S +  +   ++  I 
Sbjct: 1   MMTKYGAPDRAHVPVFAERVCQLLAPAFDRPDPVCVDATLGAGGHSLALLEAHPSLTVIG 60

Query: 64  LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDC 120
           +DRDP A+    + +  + ++F   +A + +L + + + GVD   G++FDLGVSSMQ+D 
Sbjct: 61  IDRDPDALELAGKRLARFGDRFRPARAVYDELDEVLDETGVDQISGILFDLGVSSMQLDV 120

Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGF++ +  PLDMRM  S G++A++VVN    +DL+RIL I GEE+ A RIA +IV +
Sbjct: 121 AERGFAYAQDAPLDMRMDQSQGMTAAEVVNSYAERDLSRILRIYGEERFAPRIAKSIVAQ 180

Query: 180 RQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R+ AP +++++L+ L++  V  + +    +P+ R+FQALRI VN E++ L   L  A  A
Sbjct: 181 RKRAPIESSRELADLVRDAVPAATRRRGGNPSKRTFQALRIEVNRELDVLRDALPRAIDA 240

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L   G ++V+S+HSLEDR+VK+    R+         I         + +TK    P++ 
Sbjct: 241 LAPDGRIVVLSYHSLEDRIVKRELGERTKSSAPAGLPIDVPGTEPTLRWLTKGAQPPSEA 300

Query: 299 DVAFNRRSRSAKLRAGMRTVERSIEDD 325
           ++A N R+ SAKLRA  +   R+ + D
Sbjct: 301 EIAANPRAASAKLRAAQKLGGRNQDHD 327


>gi|213612818|ref|ZP_03370644.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 304

 Score =  355 bits (911), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 120/308 (38%), Positives = 183/308 (59%), Gaps = 19/308 (6%)

Query: 23  VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMR 79
           VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++  Q    
Sbjct: 1   VLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAQTI-- 58

Query: 80  DYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
               +FS+    FS L DYV ++     +DG++ DLGVSS Q+D  +RGFSF + GPLDM
Sbjct: 59  -NDPRFSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFMRDGPLDM 117

Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM  + G SA++ + +A   D+  +L   GEE+ A RIAHAIV+R +  P   T++L+ +
Sbjct: 118 RMDPTRGQSAAEWLQRAEEADIAWVLKTFGEERFAKRIAHAIVERNREQPMTRTKELAEV 177

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           +       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L +GG L ++SFHSLE
Sbjct: 178 VAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLASGGRLSIISFHSLE 236

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRRSRSA 309
           DR+VK+F   +S        +  + A          +++ K  ++P +++VA N R+RS+
Sbjct: 237 DRIVKRFMREQSRGPQVPAGLPMTEAQLKKLGGRELRALGK--LMPGEKEVAENPRARSS 294

Query: 310 KLRAGMRT 317
            LR   RT
Sbjct: 295 VLRIAERT 302


>gi|170078284|ref|YP_001734922.1| S-adenosyl-methyltransferase [Synechococcus sp. PCC 7002]
 gi|262825754|sp|B1XP73|RSMH_SYNP2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|169885953|gb|ACA99666.1| S-adenosyl-methyltransferase [Synechococcus sp. PCC 7002]
          Length = 290

 Score =  355 bits (911), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 111/301 (36%), Positives = 168/301 (55%), Gaps = 26/301 (8%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCGQE 76
            H+ VL E+++A L   P    LD T G GG++    +   +V    +DRD  A++   E
Sbjct: 6   KHISVLKEELVAGLGVKPEGHYLDVTLGGGGHTELILQQYPDVRVTGVDRDSQAIAAASE 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
            ++ + ++F   ++ F + Q     +  DG++ DLGVSS+Q D GDRGFSF+   PLDMR
Sbjct: 66  RLKSFGDRFRAVRSNFGEYQP--QGEKFDGIIADLGVSSVQFDQGDRGFSFRFDAPLDMR 123

Query: 137 MSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M     ++A+D+VN    K L  +    G+E+ + +IA  IV +R   P QTT++L  ++
Sbjct: 124 MDQQQTLTAADIVNTYEEKALANLFYEYGDERLSRQIAKKIVMKR---PIQTTKELEEIV 180

Query: 196 QKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
             T    ++  +IHPATR FQALRI VN E++ L   L +A + LK  G L ++SFHSLE
Sbjct: 181 FYTYHPKARKVKIHPATRVFQALRIAVNGELDALQYLLVNAPQWLKPQGRLGIISFHSLE 240

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           DRLVK  F  R                  +++ +TKK +V ++ ++  N R+RSAKLR  
Sbjct: 241 DRLVKNAFRQRD-----------------IWRILTKKPMVASETEINQNPRARSAKLRFA 283

Query: 315 M 315
            
Sbjct: 284 E 284


>gi|307710487|ref|ZP_07646924.1| S-adenosyl-methyltransferase MraW [Streptococcus mitis SK564]
 gi|307618750|gb|EFN97889.1| S-adenosyl-methyltransferase MraW [Streptococcus mitis SK564]
          Length = 299

 Score =  355 bits (911), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 98/297 (32%), Positives = 159/297 (53%), Gaps = 10/297 (3%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDYKEQ--F 85
           +L+  P  + +DAT G  G+S           ++ A D+D  A+   Q+ +  Y E+   
Sbjct: 1   MLDVKPDGIYVDATLGGAGHSEYLLSKLSEKGHLYAFDQDQNAIDNAQKRLAPYIEKGMV 60

Query: 86  SLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-G 141
           +  +  F  LQ  + + GV   DG+ +DLGVSS Q+D  +RGFS++K  PLDMRM+    
Sbjct: 61  TFIKDNFRHLQARLREAGVQEIDGICYDLGVSSPQLDQRERGFSYKKDAPLDMRMNQDAS 120

Query: 142 ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYF 201
           ++A +VVN  +  DL RI    GE+K + +IA  I + R   P +TT +L+ +I+     
Sbjct: 121 LTAYEVVNNYDYHDLVRIFFKYGEDKFSKQIARKIEQARDLKPIETTTELAEIIKSAKPA 180

Query: 202 SK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKK 260
            +   + HPA + FQA+RI VN+E+    + ++ A   L   G + V++FHSLEDRL K+
Sbjct: 181 KELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDMLALDGRISVITFHSLEDRLTKQ 240

Query: 261 FFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
            F   S   +        +      + +++K ++P+ E++  N RS SAKLR   + 
Sbjct: 241 LFKEASTVEVPKGLPFIPDDLKPKMELVSRKPILPSAEELEANNRSHSAKLRVARKI 297


>gi|271502050|ref|YP_003335076.1| S-adenosyl-methyltransferase MraW [Dickeya dadantii Ech586]
 gi|270345605|gb|ACZ78370.1| S-adenosyl-methyltransferase MraW [Dickeya dadantii Ech586]
          Length = 313

 Score =  355 bits (911), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 121/314 (38%), Positives = 177/314 (56%), Gaps = 19/314 (6%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72
              +H  VLL++ +  LN     + +D TFG GG+SR           ++A+DRDP AV+
Sbjct: 3   ETFNHTTVLLDEAVNGLNIRSNGIYIDGTFGRGGHSRLILSHLGPEGRLLAIDRDPQAVA 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128
                      +FS+    FS+L DYV ++G    +DG++ DLGVSS Q+D  +RGFSF 
Sbjct: 63  VANTI---DDARFSIIHGPFSELADYVDERGLTGKIDGILLDLGVSSPQLDDPERGFSFM 119

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           + GPLDMRM  + G SA++ + +A   D+  +L   GEE+ A RIA AIV+R +  P   
Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLMKAEADDIAWVLKTFGEERFAKRIARAIVERNRIDPLTR 179

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T+ L+ LI       + ++ HPATRSFQA+RI++N+E+EE+ + L  A K L   G L V
Sbjct: 180 TKALAELIAAASPIREKHK-HPATRSFQAIRIYINSELEEIERALDGALKVLAPEGRLSV 238

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAF 302
           +SFHSLEDR+VK+F    S        +  +            +SI K  ++P  ++VA 
Sbjct: 239 ISFHSLEDRIVKRFIRQHSRGPQVPAGLPLTEEQLRSQGGQTLKSIGK--MMPPDDEVAE 296

Query: 303 NRRSRSAKLRAGMR 316
           N R+RS+ LR   R
Sbjct: 297 NPRARSSVLRFAER 310


>gi|332881743|ref|ZP_08449391.1| S-adenosyl-methyltransferase MraW [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332680382|gb|EGJ53331.1| S-adenosyl-methyltransferase MraW [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 302

 Score =  355 bits (911), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 103/315 (32%), Positives = 171/315 (54%), Gaps = 21/315 (6%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALD 65
           M  A++     HVPVLL++ +  L   P  +  D TFG GG+SR+         ++   D
Sbjct: 1   MEEAVY-----HVPVLLKECVDGLVVNPAGIYADVTFGGGGHSRAIVSRLDAAGHLYGFD 55

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGD 122
           +D  A +           +F+  ++ F  L++++   GV   DG++ DLGVSS   D  +
Sbjct: 56  QDADAEANIVA-----DGRFTFVRSNFRYLKNWMRYYGVEQLDGLLADLGVSSHHFDDAE 110

Query: 123 RGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF+  G LDMRM+  + ++A+DV+N    + L  I  + GE K A ++A  +VK R 
Sbjct: 111 RGFSFRFDGKLDMRMNQRARLTAADVLNDYAEERLADIFYLYGELKNARKLASWVVKARM 170

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
               +TT++   +++    F ++       + FQALRI VN E++ L + L +A + L+ 
Sbjct: 171 HRRIETTEEFMEVVKPL--FERDREKKELAKVFQALRIEVNQEMDALKEMLTAAVELLRP 228

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           GG L+V+++HSLEDR+VK    + + +   ++    +   P   +++  KV+VP +E+  
Sbjct: 229 GGRLVVLTYHSLEDRMVKNLVKTGNVEGKRIQDFYGNVDCP--LRAVHNKVIVPGEEEQR 286

Query: 302 FNRRSRSAKLRAGMR 316
            N RSRSAKLR   +
Sbjct: 287 ANPRSRSAKLRIAEK 301


>gi|56750578|ref|YP_171279.1| S-adenosyl-methyltransferase MraW [Synechococcus elongatus PCC
           6301]
 gi|81299784|ref|YP_399992.1| S-adenosyl-methyltransferase MraW [Synechococcus elongatus PCC
           7942]
 gi|68565438|sp|Q5N4L0|RSMH_SYNP6 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|123557084|sp|Q31PL4|RSMH_SYNE7 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|56685537|dbj|BAD78759.1| hypothetical protein [Synechococcus elongatus PCC 6301]
 gi|81168665|gb|ABB57005.1| methyltransferase [Synechococcus elongatus PCC 7942]
          Length = 296

 Score =  354 bits (910), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 117/317 (36%), Positives = 171/317 (53%), Gaps = 26/317 (8%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDR 66
           ++ +   +   HV VL  +++  L P  G   LDAT G GG+S        N  VI LDR
Sbjct: 2   LADSSQPSSFHHVTVLQRELVEGLLPDRGGWFLDATLGGGGHSELLLSEWPNTQVIGLDR 61

Query: 67  DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126
           DP A++  Q  ++ Y ++       F+  Q    D+   G++ DLGVSS Q+D  +RGFS
Sbjct: 62  DPAAIAASQTRLQLYSDRVQFQHVNFANYQP--GDRRFQGIMADLGVSSPQLDEAERGFS 119

Query: 127 FQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           F++  PLDMRM  +  ++A+ +VN+ +  DL  ++   GEE+ + RIA  IV++R   PF
Sbjct: 120 FRQDAPLDMRMDPTAELTAAAIVNEWDETDLANLIYQYGEERLSRRIARRIVEQR---PF 176

Query: 186 QTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           + T +LS  I   V  S +  RIHPATR+FQALRI VN E++ L   L  A   L  GG 
Sbjct: 177 ERTLELSEAIAGAVPRSYRYGRIHPATRTFQALRIAVNGELDALQTFLDRAPDWLAPGGR 236

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           + ++SFHSLEDR++K                            IT+K ++P++ ++  N 
Sbjct: 237 IALISFHSLEDRIIKHALRGDD-----------------RLTVITRKPLLPSEAEIESNP 279

Query: 305 RSRSAKLRAGMRTVERS 321
           RSRSAKLR   R +  S
Sbjct: 280 RSRSAKLRIAERVLPES 296


>gi|258645236|ref|ZP_05732705.1| S-adenosyl-methyltransferase MraW [Dialister invisus DSM 15470]
 gi|260402586|gb|EEW96133.1| S-adenosyl-methyltransferase MraW [Dialister invisus DSM 15470]
          Length = 310

 Score =  354 bits (910), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 104/307 (33%), Positives = 162/307 (52%), Gaps = 10/307 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQE 76
           H  VL  ++++ +        +D T G GG+S +          +I +D+D  A+   +E
Sbjct: 5   HTTVLQNEMVSHVLTNTNGTYVDCTLGGGGHSLALAEGLSNLGCIIGVDQDGEAIEAAKE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +R  + +F   +  FS +   + + G   VDG +FDLGVSS Q+D G RGFS+  +G L
Sbjct: 65  RLRGAQCKFISVRDNFSNINGILKENGIEKVDGFIFDLGVSSHQLDDGARGFSYMNNGKL 124

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM   + ++A DV+N    + L  I+   GEE+ ASRI   I + R   P  TT++L 
Sbjct: 125 DMRMDQRNSLTAYDVINTYTKEHLRNIIRDYGEERWASRIVDFIDRARMRRPISTTEELV 184

Query: 193 SLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I+  +   ++ +  HPA R+FQA+RI VNNE+  L + +      L  GG L V++FH
Sbjct: 185 HVIKAAIPSAARRDGPHPAKRTFQAIRIEVNNELGILRKAMEDCINHLNKGGRLGVITFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR++K  F   S   +      I    H    +S+  K + P+ ++V  N R+RSA 
Sbjct: 245 SLEDRIIKNTFRDMSKDCICPSEIPICICNHRRQVRSV-GKAIRPSPQEVKENPRARSAV 303

Query: 311 LRAGMRT 317
           LR   + 
Sbjct: 304 LRVVEKV 310


>gi|269137987|ref|YP_003294687.1| S-adenosyl-methyltransferase MraW [Edwardsiella tarda EIB202]
 gi|267983647|gb|ACY83476.1| S-adenosyl-methyltransferase MraW [Edwardsiella tarda EIB202]
 gi|304558034|gb|ADM40698.1| S-adenosyl-methyltransferase MraW [Edwardsiella tarda FL6-60]
          Length = 313

 Score =  354 bits (910), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 124/311 (39%), Positives = 184/311 (59%), Gaps = 19/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H  VLL++ +A LN     + +D TFG GG+SR           +IA+DRDP A++    
Sbjct: 7   HKTVLLDEAVAGLNLRSDGIYIDGTFGRGGHSRLILSQLGAEGRLIAIDRDPQAIAAAA- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +    +FS+    FS L DYV + G    +DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 66  --QIDDPRFSIVHGPFSALADYVQEMGLSGRIDGILLDLGVSSPQLDDPERGFSFMRDGP 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G+SA+  + QA  +D+  +L   GEE+ A RIA AIV+R ++ P   T++L
Sbjct: 124 LDMRMDPSRGLSAAQWLMQAEEEDIAWVLKTFGEERFAKRIARAIVERNRTEPLTRTREL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           ++LI +   F + ++ HPATRSFQA+RI++N+E++E+ + L  A  AL   G L V+SFH
Sbjct: 184 AALISEASPFKEKHK-HPATRSFQAIRIYINSELDEIERALEGALVALAPQGRLSVISFH 242

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNRRS 306
           SLEDRLVK+F    S      + +  + A          +++ K+  +P + +VA N R+
Sbjct: 243 SLEDRLVKRFMRQYSRGPQVPKGLPLTEAQLQAQGGPQLKALGKR--MPGEREVADNPRA 300

Query: 307 RSAKLRAGMRT 317
           RS+ LR   R 
Sbjct: 301 RSSVLRVAERI 311


>gi|254491294|ref|ZP_05104474.1| S-adenosyl-methyltransferase MraW [Methylophaga thiooxidans DMS010]
 gi|224463423|gb|EEF79692.1| S-adenosyl-methyltransferase MraW [Methylophaga thiooxydans DMS010]
          Length = 312

 Score =  354 bits (910), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 121/314 (38%), Positives = 182/314 (57%), Gaps = 10/314 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69
           +  +  +H+PVLL + IA L+       LDATFG GG+SR+   +      ++ LDRDP 
Sbjct: 1   MTESHSEHLPVLLNETIAALSVKADGKYLDATFGRGGHSRAILALLSDDGRLLGLDRDPQ 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDY----VPDKGVDGVVFDLGVSSMQIDCGDRGF 125
           AV+ G++ +     +F++    FS++       +    +DG++ D+GVSS Q+D  +RGF
Sbjct: 61  AVATGKQ-LAQQDNRFAIEYCAFSEMATAAHARLWQNNIDGILMDIGVSSPQLDDAERGF 119

Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF K GPLDMRM+ + GISA++ +  A + D+  ++  LGEE+   RIA AIV+ R   P
Sbjct: 120 SFSKDGPLDMRMNPNAGISAAEWLATAEMDDIAHVIKTLGEERYGKRIARAIVETRDENP 179

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
             TT+ L+ L+ K     + ++ HPATR+FQA+RIF+NNE+EEL   L  A   L  GG 
Sbjct: 180 ITTTKQLADLVDKASPSREKHK-HPATRTFQAIRIFINNELEELTLALEQALDVLAVGGR 238

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           L+V+SFHSLEDR+VK+FF   +       H   +         I  K +  ++ ++A N 
Sbjct: 239 LVVISFHSLEDRIVKRFFRDEARGDDFPAHFPVTVEQLNPRLKIIGKAIKASETELADNP 298

Query: 305 RSRSAKLRAGMRTV 318
           R+RSA LR   +  
Sbjct: 299 RARSAVLRVAEKLA 312


>gi|148360438|ref|YP_001251645.1| S-adenosylmethyl transferase MraW [Legionella pneumophila str.
           Corby]
 gi|263456280|sp|A5IFZ9|RSMH_LEGPC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|148282211|gb|ABQ56299.1| S-adenosylmethyl transferase MraW [Legionella pneumophila str.
           Corby]
 gi|307609707|emb|CBW99217.1| hypothetical protein LPW_09981 [Legionella pneumophila 130b]
          Length = 308

 Score =  354 bits (910), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 115/311 (36%), Positives = 167/311 (53%), Gaps = 12/311 (3%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H  VLL + I  L      +  D TFG GG+SR           + A+D+D  AV  
Sbjct: 1   MAKHQSVLLHESIKGLAIKADGIYFDGTFGRGGHSREILNHLSDKGRLFAIDKDLDAVQY 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGV----DGVVFDLGVSSMQIDCGDRGFSFQK 129
            ++      ++F +F  +F+Q++++    GV    DG++ DLGVSS Q+D  +RGFSF  
Sbjct: 61  AKDYF-GLDKRFQIFHGSFAQIKEFASQAGVIGAVDGILLDLGVSSPQLDNPERGFSFML 119

Query: 130 SGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM     I+A++ VN+A V +L  +    GEE+ A RIA AIV  R+  P  TT
Sbjct: 120 QGPLDMRMDLTQSINAANFVNEAEVNELAHVFRAYGEERFAGRIAKAIVDARKLKPITTT 179

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ ++++     + ++ HPATR FQA+RI VN E+ +L+  L      L   G L V+
Sbjct: 180 LELAEIVKEANPKWEKHK-HPATRVFQAIRIHVNQELTDLSNCLEQCLDVLGPRGRLAVI 238

Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           SFHSLEDR+VK+F   +  G    V   I        F+ +  K V P   ++  N RSR
Sbjct: 239 SFHSLEDRIVKQFMRDKEQGNRPPVEVPIKYEELKTNFKRV-GKAVKPQSSEIKENVRSR 297

Query: 308 SAKLRAGMRTV 318
           SA LR G +  
Sbjct: 298 SAVLRIGEKLA 308


>gi|152979594|ref|YP_001345223.1| S-adenosyl-methyltransferase MraW [Actinobacillus succinogenes
           130Z]
 gi|263446597|sp|A6VQP1|RSMH_ACTSZ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|150841317|gb|ABR75288.1| S-adenosyl-methyltransferase MraW [Actinobacillus succinogenes
           130Z]
          Length = 321

 Score =  354 bits (910), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 122/324 (37%), Positives = 174/324 (53%), Gaps = 20/324 (6%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           MS     +  +H  VLL + +  L      + +D TFG GG+SR           +IA+D
Sbjct: 1   MSERNTFSHPEHTTVLLHEAVQGLALKEQGIYIDGTFGRGGHSRLILSRLSPNGRLIAVD 60

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCG 121
           RDP A+   ++       +F +   +FS + +     G    VDG++ DLGVSS Q+D  
Sbjct: 61  RDPLAIVEAEKI---QDPRFQIEHNSFSAIPEICAKYGLTGKVDGILLDLGVSSPQLDDA 117

Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
            RGFSF K GPLDMRM  + G+SAS+ + Q + +DL  +L   GEE+ A RIA AIV   
Sbjct: 118 QRGFSFMKDGPLDMRMDTTKGLSASEWLAQVSERDLAWVLKTFGEERFAKRIAAAIVNYN 177

Query: 181 QSAP------FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234
           +SA          T  L+ LI   V F K+   HPATR+FQA+RIF+N+E++EL   L+S
Sbjct: 178 KSAVEKNEEILNRTLQLAELISSAVPF-KDKHKHPATRTFQAIRIFLNSELDELESVLQS 236

Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI--TKKV 292
           A   L   G L V+SFHSLEDR+VK F   +S      + +          +++    K 
Sbjct: 237 ALTVLAPQGRLSVISFHSLEDRMVKHFMRKQSRGEDIPKGLPLREEQIQRNRTLKTIGKA 296

Query: 293 VVPTQEDVAFNRRSRSAKLRAGMR 316
           + P++ ++A N RSRSA LR   +
Sbjct: 297 IQPSEREIAVNPRSRSAVLRIAEK 320


>gi|260591737|ref|ZP_05857195.1| S-adenosyl-methyltransferase MraW [Prevotella veroralis F0319]
 gi|260536021|gb|EEX18638.1| S-adenosyl-methyltransferase MraW [Prevotella veroralis F0319]
          Length = 326

 Score =  354 bits (910), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 110/306 (35%), Positives = 171/306 (55%), Gaps = 13/306 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPFAVSCGQE 76
           HVPVLL   I  LN  P  + +D TFG GG+SR      K G ++ + D+D  A     +
Sbjct: 21  HVPVLLNDSIEGLNIHPNGIYVDVTFGGGGHSREILSRLKKGCHLYSFDQDADAEQNVSK 80

Query: 77  --TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSG 131
                +  ++F+  ++ F  L++++    +D   G++ DLGVSS   D   RGFSF+   
Sbjct: 81  MGLSEEQIDRFTFIRSNFRYLKNWMRYYSIDHIDGLLADLGVSSHHFDDETRGFSFRFEA 140

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+  +G +A+D++N+ + + +  IL + GE KQ+ RIA AIVK R+   F+TT+D
Sbjct: 141 PLDMRMNKRAGRTAADILNEYDEEQIADILYLYGEIKQSRRIAAAIVKAREKRTFKTTKD 200

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L S+++     ++  +     + FQALRI VN+E++ L + L  A + L  GG L V+++
Sbjct: 201 LLSIVEPFFLHAREKK--DMAKMFQALRIEVNHEMDALREMLLGATELLAPGGRLSVITY 258

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDR+VK    S + +    +        P  F+ I  KV+  +  +   N RSRSAK
Sbjct: 259 HSLEDRMVKNIMKSGNVEGKVKQDFYGRRETP--FRLINNKVITASNAEQELNPRSRSAK 316

Query: 311 LRAGMR 316
           LR   +
Sbjct: 317 LRIAEK 322


>gi|308185651|ref|YP_003929782.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Pantoea
           vagans C9-1]
 gi|308056161|gb|ADO08333.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Pantoea
           vagans C9-1]
          Length = 313

 Score =  354 bits (910), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 121/317 (38%), Positives = 177/317 (55%), Gaps = 21/317 (6%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAV 71
                H  VLL++ +  LN     + +D TFG GG+SR           +IA+DRDP A+
Sbjct: 2   QENFKHTTVLLDEAVNGLNIREDGIYIDGTFGRGGHSRLILSQLGEKGRLIAIDRDPQAI 61

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSF 127
           +   E       +FS+    FS L +YV ++     +DG++ DLGVSS Q+D  +RGFSF
Sbjct: 62  AAAAEI---TDPRFSIIHGPFSALAEYVAERDLVGKIDGILLDLGVSSPQLDDAERGFSF 118

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
            + GPLDMRM  S G SA++ +  A   D+  +L   GEE+ + RIA AIV+R +  P  
Sbjct: 119 MRDGPLDMRMDPSRGHSAAEWLLHAEEADIAFVLKTYGEERFSKRIARAIVERNREQPMT 178

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
            T++L+ +I   +   K+   HPATRSFQA+RI++N+E+EE+   L+ A + L   G L 
Sbjct: 179 RTRELAEVISVAMPV-KDKFKHPATRSFQAIRIWINSELEEIDIALKGAVEVLAPQGRLS 237

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHP------AVFQSITKKVVVPTQEDV 300
           V+SFHSLEDRLVK+F   +S +   V   IP   H          + + K  + P   +V
Sbjct: 238 VISFHSLEDRLVKRFMRDQS-RGPQVPAGIPMTEHQLRALGGRELKLLGK--MSPGDAEV 294

Query: 301 AFNRRSRSAKLRAGMRT 317
           + N R+RS+ LR   +T
Sbjct: 295 SENPRARSSVLRIAEKT 311


>gi|296532828|ref|ZP_06895500.1| S-adenosyl-methyltransferase MraW [Roseomonas cervicalis ATCC
           49957]
 gi|296266841|gb|EFH12794.1| S-adenosyl-methyltransferase MraW [Roseomonas cervicalis ATCC
           49957]
          Length = 311

 Score =  354 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 125/308 (40%), Positives = 182/308 (59%), Gaps = 9/308 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSNVIALDRDPFAVSCGQ 75
           +  H+PV+L +V+  L P  G   +D TFG GGY+R+   +    + A DRDP A++ GQ
Sbjct: 1   MSGHLPVMLAEVLDNLAPRAGGAYVDGTFGGGGYARAILGRAACTLHAFDRDPDAIARGQ 60

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             + +   + +L +  F ++++ + ++GV   DGVV DLGVSS Q+D  +RGFSF+  GP
Sbjct: 61  ALLAESAGRLTLIERRFGEMREALAERGVTTVDGVVLDLGVSSFQLDQAERGFSFRFDGP 120

Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           LDMRM  +G SA+D+VN     +L  IL  LGEE+ + RIA  +V  R+ AP +TT  L 
Sbjct: 121 LDMRMEKAGPSAADLVNTLPEAELADILWQLGEERHSRRIARTLVAARREAPIETTGRLR 180

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           SLI   V     + I  ATRSFQALR+ VN+E+ E+ +GL +A   L  GG L+VV+FHS
Sbjct: 181 SLI-HAVMPRDPSGIDSATRSFQALRLKVNDELGEVERGLEAAASLLAPGGRLVVVAFHS 239

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPS----NAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           LEDR+VK+F    +G+        PS          F+ +    + P   ++A N R+RS
Sbjct: 240 LEDRIVKRFMQQAAGRGPGASRHDPSALLGGGQKPRFRLVANNALRPGAAELAANPRARS 299

Query: 309 AKLRAGMR 316
           A+LR   +
Sbjct: 300 ARLRTLEK 307


>gi|149377270|ref|ZP_01895017.1| S-adenosyl-methyltransferase MraW [Marinobacter algicola DG893]
 gi|149358458|gb|EDM46933.1| S-adenosyl-methyltransferase MraW [Marinobacter algicola DG893]
          Length = 326

 Score =  354 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 122/321 (38%), Positives = 180/321 (56%), Gaps = 12/321 (3%)

Query: 9   MSSAIHHTIG---DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVI 62
           M++   H       H  VLL+  + LL   P  V +D TFG GG+SR        G  ++
Sbjct: 1   MTAGREHEPAGQYRHRSVLLDSAVDLLVNDPDGVYVDGTFGRGGHSRLILGRLGQGGKLL 60

Query: 63  ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQID 119
            +D+DP A+   ++ +     +F  F  +F++L      +G   V+GV+ DLGVSS Q+D
Sbjct: 61  GIDKDPDAIQVARD-LSASDARFQPFHGSFAELGAAAEAQGWMKVNGVLLDLGVSSPQLD 119

Query: 120 CGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178
              RGFSF + GPLDMRM      SA+  + +A+ KD+  ++   GEEK + RIA  +V+
Sbjct: 120 DAARGFSFMRDGPLDMRMDPGQAPSAAQWLAEADEKDIANVIWRYGEEKFSRRIARLVVE 179

Query: 179 RRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           RR+ AP +TT+ L+SL+ + V   K    HPATR+FQA+RIF+N E+E+L  GL +A + 
Sbjct: 180 RRKEAPLETTRQLASLVSEAVP-KKEKHKHPATRTFQAIRIFINRELEDLELGLNAAVEK 238

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L  GG L+V+SFHSLEDRLVK+F    +      + +  +    A    +  K      E
Sbjct: 239 LMPGGRLVVISFHSLEDRLVKRFMRDLARGPRLPKGVPVTAEQEASAFRLIGKANKADTE 298

Query: 299 DVAFNRRSRSAKLRAGMRTVE 319
           +V+ N R+RSA +R   R  E
Sbjct: 299 EVSDNVRARSAVMRVLERIPE 319


>gi|300722051|ref|YP_003711331.1| S-adenosyl-dependent methyl transferase [Xenorhabdus nematophila
           ATCC 19061]
 gi|297628548|emb|CBJ89120.1| S-adenosyl-dependent methyl transferase [Xenorhabdus nematophila
           ATCC 19061]
          Length = 314

 Score =  354 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 121/320 (37%), Positives = 180/320 (56%), Gaps = 19/320 (5%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPF 69
           + ++   H  VLL++ +  LN     + +D TFG GG+SR           ++A+DRDP 
Sbjct: 1   MANSHFKHTSVLLDEAVNGLNIQEDGIYIDGTFGRGGHSRLILSKLGPNGRLMAIDRDPQ 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGF 125
           A+   +       E+FS+    FS+L  YV D      ++GV+ DLGVSS Q+D  +RGF
Sbjct: 61  AIEASK---AITDERFSITHGPFSELATYVEDADLVGKINGVLLDLGVSSPQLDDPERGF 117

Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF + GPLDMRM  + G SAS+ + +A  +D+  +L   GEE+ A RIA AIV R Q  P
Sbjct: 118 SFMRDGPLDMRMDPTRGQSASEWLMKAEEEDIAWVLKTFGEERFAKRIARAIVARSQEQP 177

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
              T++L+ LI +     + ++ HPATRSFQA+RI++N+E+EE+ + L  A + L   G 
Sbjct: 178 MTRTRELAELIAQASPIKEKHK-HPATRSFQAIRIYINSELEEIERALDGALRVLAPQGR 236

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQED 299
           L V+SFHSLEDR+VK+F    S        +  + A          + I K  + P+ ++
Sbjct: 237 LSVISFHSLEDRIVKRFIRQNSQGPQVPAGLPLTEAQLKAMGGRSLKFIGK--MKPSGDE 294

Query: 300 VAFNRRSRSAKLRAGMRTVE 319
           VA N R+RS+ LR   +  E
Sbjct: 295 VATNPRARSSVLRFAEKADE 314


>gi|260550822|ref|ZP_05825029.1| S-adenosylmethionine-dependent methyltransferase [Acinetobacter sp.
           RUH2624]
 gi|260406132|gb|EEW99617.1| S-adenosylmethionine-dependent methyltransferase [Acinetobacter sp.
           RUH2624]
          Length = 307

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 110/310 (35%), Positives = 171/310 (55%), Gaps = 16/310 (5%)

Query: 20  HVPVLLEKVIA-LLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
           H+ VLL + +  LL      V +DATFG GG++R         + V A D+DP A+    
Sbjct: 3   HISVLLFETVESLLADRTTGVYIDATFGRGGHTRLLLSKLDENARVYAFDKDPQALEVAG 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +     +F++  A+F+ +++ + + GV   DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 63  A-LAQEDPRFTIIHASFADIKEKMQEIGVQSVDGIMADLGVSSPQLDQAERGFSFMQDGP 121

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G++A++ + +   + L  I+   GEE+ + RIA AI +        TT  L
Sbjct: 122 LDMRMDNSKGLTAAEWLLEIEEEQLANIIYQYGEERYSRRIAKAIKQA---GKLDTTAQL 178

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + L++      + ++ HPATR+FQA+RI +N E++++   L  A   LK  G L V+SFH
Sbjct: 179 AELVKTAHPKWEKHK-HPATRTFQAIRIAINKELDDIEVFLPQAVDLLKPKGRLSVISFH 237

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNA-HPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDRL+K+F    S         +P         + I++  V  ++E+V  N RSRSA 
Sbjct: 238 SLEDRLIKQFIQKESTLAEDSGWGMPQQQVDTRRLKKISR--VRASEEEVKANPRSRSAW 295

Query: 311 LRAGMRTVER 320
           LR   R  ++
Sbjct: 296 LRVAERLEQK 305


>gi|182677677|ref|YP_001831823.1| S-adenosyl-methyltransferase MraW [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|263445947|sp|B2IGF2|RSMH_BEII9 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|182633560|gb|ACB94334.1| S-adenosyl-methyltransferase MraW [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 355

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 152/328 (46%), Positives = 204/328 (62%), Gaps = 8/328 (2%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSNVIALDRDPFAVSCGQE 76
             HVPVL E+V+A L+   G   LDATFGAGGY+R+   +  ++V+A+DRDP A++ G+ 
Sbjct: 17  ARHVPVLREEVVAALDCKKGGFYLDATFGAGGYTRALLAEPETHVLAIDRDPEAIAAGRA 76

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
              +   +  L    FS L D    +G+   DG+VFD+GVSSMQ+D  +RGFSF+  GPL
Sbjct: 77  LEAESAGRLILAHGRFSTLADIAAAEGIPAFDGIVFDIGVSSMQLDQPERGFSFRGEGPL 136

Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           DMRM   G SA+D+VN A+ + L  I    GEE+ + RIA AIV  R   PF TT+ L+ 
Sbjct: 137 DMRMESRGPSAADLVNTADEQRLADIFYYFGEERASRRIARAIVTDRAHTPFTTTRQLAE 196

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           LI +     K   IHPATR FQALRI VN E+ EL + L +AE  L+ GG L+VV+FHSL
Sbjct: 197 LIARVNP-GKPGDIHPATRVFQALRIAVNEELLELVRALAAAEALLREGGRLVVVTFHSL 255

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           EDR+VK+F A+RSG+  AV   +P      P  F    K+ V+P+ E++A N R+RSAKL
Sbjct: 256 EDRIVKQFLAARSGRGQAVSRPLPGEPALAPPTFILPGKQPVLPSPEEIAVNPRARSAKL 315

Query: 312 RAGMRTVERSIEDDS-FVHLPRLPTLSQ 338
           R G+RT   +   +S  + L  LP  S 
Sbjct: 316 RFGLRTAAPARGLESGLLPLATLPETSH 343


>gi|307132591|ref|YP_003884607.1| 16S rRNA m(4)C1402 methyltransferase [Dickeya dadantii 3937]
 gi|306530120|gb|ADN00051.1| 16S rRNA m(4)C1402 methyltransferase [Dickeya dadantii 3937]
          Length = 313

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 120/312 (38%), Positives = 175/312 (56%), Gaps = 15/312 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72
               H  VLL++ +  LN     + +D TFG GG+SR           ++A+DRDP AV+
Sbjct: 3   ETFKHTTVLLDEAVNGLNIRSNGIYIDGTFGRGGHSRLILSRLGPEGRLLAIDRDPQAVA 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128
                      +FS+    FS+L +YV ++G    +DG++ DLGVSS Q+D  +RGFSF 
Sbjct: 63  VANTI---DDARFSIIHGPFSELAEYVDERGLTGKIDGILLDLGVSSPQLDDPERGFSFM 119

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           + GPLDMRM  + G SA++ + +A  +D+  +L   GEE+ A RIA AIV+R +  P   
Sbjct: 120 RDGPLDMRMDPTRGQSAAEWLMKAEAEDIAWVLKTFGEERFAKRIARAIVERNRVEPLTR 179

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T+ L+ LI       + ++ HPATRSFQA+RI++N+E+EE+ + L  A + L   G L V
Sbjct: 180 TKALAELIAAASPIREKHK-HPATRSFQAIRIYINSELEEIERALDGALQVLAPEGRLSV 238

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNR 304
           +SFHSLEDR+VK+F    S        +  +          T K V   +P  E+VA N 
Sbjct: 239 ISFHSLEDRIVKRFIRQHSRGPQVPAGLPLTEEQLRSRGGQTLKAVGKMMPPDEEVADNP 298

Query: 305 RSRSAKLRAGMR 316
           R+RS+ LR   R
Sbjct: 299 RARSSVLRFAER 310


>gi|300173578|ref|YP_003772744.1| S-adenosyl-methyltransferase MraW [Leuconostoc gasicomitatum LMG
           18811]
 gi|299887957|emb|CBL91925.1| S-adenosyl-methyltransferase MraW [Leuconostoc gasicomitatum LMG
           18811]
          Length = 313

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 109/311 (35%), Positives = 167/311 (53%), Gaps = 10/311 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSC 73
           T  +HV VLL++ +ALLN  P    +DAT G GG++    K   N  + + D+D  A+  
Sbjct: 2   TEFEHVTVLLKEAVALLNVKPDGNYVDATLGGGGHTGEILKQLDNGILYSFDQDDTAIKY 61

Query: 74  GQE--TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQ 128
            +E         +  L    F  L + + + GV   DGV++DLGVSS+Q D G RGFS+ 
Sbjct: 62  NEEQYAAEIASGKLVLIHQNFRTLTEALAELGVTQVDGVLYDLGVSSVQFDDGQRGFSYN 121

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
               LDMRM     ++A  ++N+ +  D+ RIL   GE++   +IA  I   R++    T
Sbjct: 122 YDADLDMRMDQRQTLTAKTIINEWSFNDILRILSRYGEDRFPKQIARKIEHHRENGVINT 181

Query: 188 TQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T +L  +I++ +   ++    HPA R+FQALRI VN+E+  L   L  +   L  GG + 
Sbjct: 182 TFELVDIIKEAIPAPARRKGGHPAKRTFQALRIAVNDELGALEDSLTQSLDLLAPGGRIS 241

Query: 247 VVSFHSLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
            ++F SLEDRLVK+ F  + S   + V   +      A +  +T+K ++PT ++   N R
Sbjct: 242 AITFQSLEDRLVKQMFREKTSTPELPVGLPVLPGQFEADYTLLTRKPILPTNDETQTNHR 301

Query: 306 SRSAKLRAGMR 316
           S+SAKLR   R
Sbjct: 302 SQSAKLRGIER 312


>gi|254525262|ref|ZP_05137317.1| S-adenosyl-methyltransferase MraW [Stenotrophomonas sp. SKA14]
 gi|219722853|gb|EED41378.1| S-adenosyl-methyltransferase MraW [Stenotrophomonas sp. SKA14]
          Length = 322

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 119/310 (38%), Positives = 178/310 (57%), Gaps = 8/310 (2%)

Query: 12  AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDP 68
            +  +   H+PVL  +V+  L        LD TFG GG++R           ++ +D+DP
Sbjct: 11  PVSQSPAVHLPVLYTQVLEGLRVIENGRYLDGTFGRGGHARGVLTQLGPEGRLLVMDKDP 70

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDY-VPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
            A++  +        + S+F+ +F+QL  +     G+DGV+FDLGVSS Q+D  +RGFSF
Sbjct: 71  EAIAVAERDFAP-DPRVSIFRGSFAQLLQWDATADGLDGVLFDLGVSSPQLDVAERGFSF 129

Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
            K GPLDMRM   SG SA+  +N+   +++  +L   GEE+Q+ RIA AIV RR+  PF 
Sbjct: 130 GKDGPLDMRMDPDSGESAAQWINRVEDREIADVLWTYGEERQSRRIARAIVARREKQPFT 189

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
            T +L+ L+   +   K ++IHPATRSFQA+RI +N E+ +L  GL +A + LK GG L 
Sbjct: 190 RTAELAELVASVMPRGK-DKIHPATRSFQAIRIHINRELADLEAGLDAAVERLKPGGRLA 248

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           ++SFHSLEDR+VK++    +    A R +  +         I    +  T E++A N R+
Sbjct: 249 IISFHSLEDRIVKQYMNRLAKAPPANRRLPEAEVFVPTLDLI-GGAIKATDEELAANPRA 307

Query: 307 RSAKLRAGMR 316
           RSA LR   +
Sbjct: 308 RSAVLRVAQK 317


>gi|263506479|sp|B0U504|RSMH_XYLFM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 313

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 114/305 (37%), Positives = 171/305 (56%), Gaps = 10/305 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HVPVL  + +  L        LD TFG GG++R   +    G  ++ +D+DP A++   E
Sbjct: 3   HVPVLYTQAMEGLRVVENGTYLDGTFGRGGHARGVLQQLGPGGRLLVMDKDPEAIAMA-E 61

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
            +     +  +   +F+ L      + +DGV+FDLGVSS Q+D  +RGFSF K GPLDMR
Sbjct: 62  RVFSCDPRVVIRHGSFALLAQLAAPQSLDGVLFDLGVSSPQLDVPERGFSFAKDGPLDMR 121

Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M    G SA+  + + + +++  +L   GEEKQ+ RIA AIV  R + P   T  L+ LI
Sbjct: 122 MDPEMGESAAQWLARVSEREIAEVLWTYGEEKQSRRIARAIVAYRANQPLLRTVQLAELI 181

Query: 196 QKTVYFSK----NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
              +  +K     +RIHPATRSFQ +RI VN E+ +L  GL +A  AL+ GG L+V+SFH
Sbjct: 182 ASVMLRTKSGACKSRIHPATRSFQGIRIHVNRELVDLEVGLEAALAALRPGGRLVVISFH 241

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+VK+F +  +      R +        + + I +  +   ++++  N R+RSA L
Sbjct: 242 SLEDRIVKQFISRHAKVPPTNRRLPEVQTFVPLLRMIGR-AIKADEDELEVNPRARSAVL 300

Query: 312 RAGMR 316
           R   +
Sbjct: 301 RVAEK 305


>gi|239907971|ref|YP_002954712.1| S-adenosyl-methyltransferase MraW [Desulfovibrio magneticus RS-1]
 gi|263446299|sp|C4XK86|RSMH_DESMR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|239797837|dbj|BAH76826.1| S-adenosyl-methyltransferase MraW [Desulfovibrio magneticus RS-1]
          Length = 324

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 123/308 (39%), Positives = 169/308 (54%), Gaps = 11/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H PVLL +VI LL   PG  ILDAT G GG+SR   +       V+ LDRD  A+S    
Sbjct: 7   HKPVLLREVIELLGIRPGMKILDATVGLGGHSRGMLEAAGGEGQVLGLDRDREALSEAGR 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  Y ++  L +   S+    + + G   VD  + D G+SS+Q+D  +RGF F   GPL
Sbjct: 67  WLAPYGDRVRLVRTRSSRFPAVLAEAGWEKVDAALLDAGMSSLQLDDPERGFGFLHDGPL 126

Query: 134 DMRMSCS--GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           DMRM     G +A  +VN A+   L  I+   GE+ QA RIA AIV  R+     TT  L
Sbjct: 127 DMRMGAEDGGETAEGLVNLASYARLCEIIREYGEDPQAGRIARAIVSVREKEAITTTARL 186

Query: 192 SSLIQKTVYFSKNN--RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           + ++ +          R HPATR+FQALR+ VN E+ EL   L++    L  GG + V+S
Sbjct: 187 AEVVWQAYPAKWRATARQHPATRTFQALRMAVNEELAELEAFLKAIPDHLAPGGRVAVIS 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDRLVK+ F + +   +  R  ++    H A  + +TKK V+  +E+V  N R+RS
Sbjct: 247 FHSLEDRLVKRAFRAEATDCICPREQVVCVCGHRARLRILTKKPVMAGEEEVRDNSRARS 306

Query: 309 AKLRAGMR 316
           AKLR   R
Sbjct: 307 AKLRVAER 314


>gi|302344204|ref|YP_003808733.1| S-adenosyl-methyltransferase MraW [Desulfarculus baarsii DSM 2075]
 gi|301640817|gb|ADK86139.1| S-adenosyl-methyltransferase MraW [Desulfarculus baarsii DSM 2075]
          Length = 316

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 115/313 (36%), Positives = 174/313 (55%), Gaps = 10/313 (3%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73
              H PVLL + +  + P PG + +D T GAGG++ +  +       ++ LDRD  A++ 
Sbjct: 2   TAGHRPVLLAETLRAMQPKPGGIYVDGTLGAGGHAAAILEACGPTGRLLGLDRDAQALAL 61

Query: 74  GQETMRDYK-EQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQK 129
               +  +   +  L QA+F ++   +   GV   DG++ DLGVSSMQ+D G RGFSF  
Sbjct: 62  ATANLAGFDQARLRLTQASFDEIGQCLSAWGVAACDGILLDLGVSSMQLDQGQRGFSFMH 121

Query: 130 SGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            GPLDMRM  SG  A+++V  ++   LT I   LGEE  A R A A+++ R+  P  +T 
Sbjct: 122 DGPLDMRMGQSGPGAAELVADSDQNRLTAIFRDLGEEPLARRYAQAVIEARRQGPIVSTG 181

Query: 190 DLSSLIQKTVYF--SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            L+++I+ +      + ++IHPATR FQALR+ VN+E+  L + L  A   L  GG+L V
Sbjct: 182 RLAAVIEASTPAAVRRKSKIHPATRVFQALRLAVNDELGRLERFLAGAPAWLNPGGVLAV 241

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           +S+HSLEDR VK+   + +        +         +F   + K + P+  +VA N RS
Sbjct: 242 ISYHSLEDRRVKRSLRAAANPCTCPPDLPRCVCGRRPLFDLPSHKAITPSAVEVAQNPRS 301

Query: 307 RSAKLRAGMRTVE 319
           RSA+LR  +RT  
Sbjct: 302 RSARLRVAVRTEA 314


>gi|15837392|ref|NP_298080.1| S-adenosyl-methyltransferase MraW [Xylella fastidiosa 9a5c]
 gi|20139246|sp|Q9PF88|RSMH_XYLFA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|9105686|gb|AAF83600.1|AE003919_11 conserved hypothetical protein [Xylella fastidiosa 9a5c]
          Length = 313

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 114/305 (37%), Positives = 171/305 (56%), Gaps = 10/305 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HVPVL  + +  L        LD TFG GG++R   ++   G  ++ +D+DP A++   E
Sbjct: 3   HVPVLYTQAMEGLRVVENGTYLDGTFGRGGHARGVLQLLGPGGRLLVMDKDPEAIAMA-E 61

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
                  +  +   +F+ L      + +DGV+FDLGVSS Q+D  +RGFSF K GPLDMR
Sbjct: 62  RAFSCDPRVVIRHGSFALLAQLAAPQSLDGVLFDLGVSSPQLDVPERGFSFVKDGPLDMR 121

Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M    G SA+  + + + +++  +L   GEEKQ+ RIA AIV  R + P   T  L+ LI
Sbjct: 122 MDPEMGESAAQWLARVSEREIADVLWTYGEEKQSRRIARAIVAYRANQPLLRTVQLAELI 181

Query: 196 QKTVYFSK----NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
              +  +K     +RIHPATRSFQ +RI VN E+ +L  GL +A  AL+ GG L+V+SFH
Sbjct: 182 ASVMLRTKSGACKSRIHPATRSFQGIRIHVNRELVDLEVGLEAALAALRPGGRLVVISFH 241

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+VK+F +  +      R +        + + I +  +   ++++  N R+RSA L
Sbjct: 242 SLEDRIVKQFISRHAKVPPTNRRLPEVQTFVPLLRMIGR-AIKADEDELEVNPRARSAVL 300

Query: 312 RAGMR 316
           R   +
Sbjct: 301 RVAEK 305


>gi|313667806|ref|YP_004048090.1| s-adenosyl-l-methionine-dependent methyltransferase MraW [Neisseria
           lactamica ST-640]
 gi|313005268|emb|CBN86701.1| s-adenosyl-l-methionine-dependent methyltransferase MraW (ec
           2.1.1.-) [Neisseria lactamica 020-06]
          Length = 319

 Score =  354 bits (908), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 121/324 (37%), Positives = 172/324 (53%), Gaps = 13/324 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           MS   ++    H+ VLL + +  L      V +D TFG GG+SR           ++  D
Sbjct: 1   MSETENY---RHITVLLHEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLVVFD 57

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGD 122
           +DP AV+  +E +    ++ S+    F+  Q  + D G   VDG +FDLGVSS QID   
Sbjct: 58  KDPRAVAAAEE-LARSDKRVSVVHGGFASFQTALDDLGIGDVDGALFDLGVSSPQIDDAA 116

Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF+   PLDMRM  + G+SA++ +  A+ +DL  ++   GEE+ + +IA AIV +R 
Sbjct: 117 RGFSFRFDAPLDMRMDTTRGMSAAEWIASASEQDLHEVIKNYGEERFSRQIARAIVAQRA 176

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
             P  TT+ L+ L  + V   +  +  PATR+FQA+RIF+N E+EE+   L      LK 
Sbjct: 177 ENPIDTTRKLAQLAAQNVRTRECGQ-DPATRTFQAVRIFINRELEEVEAVLPQVMCRLKQ 235

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDV 300
           GG L V++FHSLEDR+VK+F    S      R      A  P     I  K + P   +V
Sbjct: 236 GGRLAVIAFHSLEDRIVKQFVGKYSRHAPLPRWAAVREADLPEPPLKIVGKALKPGGAEV 295

Query: 301 AFNRRSRSAKLRAGMRTVERSIED 324
           A N R+RSA LR   RT      +
Sbjct: 296 AANPRARSAVLRVAERTAGPIPAE 319


>gi|329964563|ref|ZP_08301617.1| S-adenosyl-methyltransferase MraW [Bacteroides fluxus YIT 12057]
 gi|328524963|gb|EGF52015.1| S-adenosyl-methyltransferase MraW [Bacteroides fluxus YIT 12057]
          Length = 319

 Score =  354 bits (908), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 104/305 (34%), Positives = 159/305 (52%), Gaps = 16/305 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H+PVLL   +  +N  P    +D TFG GG+S+        G  ++  D+D  A     E
Sbjct: 18  HIPVLLMPSVDGMNIRPDGTYVDVTFGGGGHSKEILSRLGDGGRLLGFDQDEDA-----E 72

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                   F   ++ F  L +++   G   VD ++ DLGVSS   D  +RGFSF+  G L
Sbjct: 73  RNIVNDPHFIFVRSNFRYLHNFLRYHGIGQVDAILADLGVSSHHFDDSERGFSFRFEGAL 132

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  +G +A+D+VN  + + L  I  + GE K + ++A  IVK R      T  +  
Sbjct: 133 DMRMNKRAGTTAADIVNAYDEERLADIFYLYGELKNSRKLASVIVKARALQKISTIGEFL 192

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +++    F +        + FQALRI VN E+E L + L +A +ALK GG L V+++HS
Sbjct: 193 DIVKPL--FGREREKKELAKVFQALRIEVNQEMEALKEMLYAATEALKPGGRLAVITYHS 250

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK    + + +  A +    +   P  F+ +  KV+VP + ++  N RSRSAKLR
Sbjct: 251 LEDRIVKNVMKTGNIEGKAEKDFYGNVRAP--FRLVNNKVIVPDESEIERNPRSRSAKLR 308

Query: 313 AGMRT 317
              + 
Sbjct: 309 IAEKV 313


>gi|304396555|ref|ZP_07378436.1| S-adenosyl-methyltransferase MraW [Pantoea sp. aB]
 gi|304356064|gb|EFM20430.1| S-adenosyl-methyltransferase MraW [Pantoea sp. aB]
          Length = 313

 Score =  354 bits (908), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 122/317 (38%), Positives = 177/317 (55%), Gaps = 21/317 (6%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAV 71
                H  VLL++ +  LN     + +D TFG GG+SR           +IA+DRDP A+
Sbjct: 2   QENFKHTTVLLDEAVNGLNIREDGIYIDGTFGRGGHSRLILSQLGEKGKLIAIDRDPQAI 61

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSF 127
           +   E       +FS+    FS L +YV ++     +DG++ DLGVSS Q+D  +RGFSF
Sbjct: 62  AAAAEI---TDPRFSIIHGPFSALAEYVSERDLVGKIDGILLDLGVSSPQLDDAERGFSF 118

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
            + GPLDMRM  S G SA++ +  A   D+  +L   GEE+ A RIA AIV+R +  P  
Sbjct: 119 MRDGPLDMRMDPSRGHSAAEWLLHAEEADIAFVLKTYGEERFAKRIARAIVERNREQPMT 178

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
            T++L+ +I   +   K+   HPATRSFQA+RI++N+E+EE+   L+ A + L   G L 
Sbjct: 179 RTRELAEVISIAMPV-KDKFKHPATRSFQAIRIWINSELEEIDIALKGAVQVLAPQGRLS 237

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHP------AVFQSITKKVVVPTQEDV 300
           V+SFHSLEDRLVK+F   +S +   V   IP   H          + + K  + P   +V
Sbjct: 238 VISFHSLEDRLVKRFMRDQS-RGPQVPAGIPMTEHQLRALGGRELKLLGK--MSPGDAEV 294

Query: 301 AFNRRSRSAKLRAGMRT 317
           + N R+RS+ LR   +T
Sbjct: 295 SENPRARSSVLRIAEKT 311


>gi|145635580|ref|ZP_01791278.1| S-adenosyl-methyltransferase [Haemophilus influenzae PittAA]
 gi|229844915|ref|ZP_04465053.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae 6P18H1]
 gi|145267142|gb|EDK07148.1| S-adenosyl-methyltransferase [Haemophilus influenzae PittAA]
 gi|229812296|gb|EEP47987.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae 6P18H1]
          Length = 320

 Score =  354 bits (908), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 122/324 (37%), Positives = 174/324 (53%), Gaps = 19/324 (5%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDR 66
           M+S    +  +H+ VLL + +  L      + +D TFG GG+SR          +IA+DR
Sbjct: 1   MNSENSFSSSEHITVLLHEAVNGLALKENGIYIDGTFGRGGHSRFILSQLSNGRLIAVDR 60

Query: 67  DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGD 122
           DP A++   +       +F +   +FS + +          +DG++ DLGVSS Q+D  +
Sbjct: 61  DPRAIAEAHKI---QDSRFQIEHNSFSHIPEICDKLNLVGKIDGILLDLGVSSPQLDEAE 117

Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF K GPLDMRM  + G+SA + + Q +++DLT +L   GEE+ A RIA AIV   +
Sbjct: 118 RGFSFMKDGPLDMRMDTTQGLSAEEWLKQVSIEDLTWVLKTFGEERFAKRIATAIVDFNK 177

Query: 182 SAP------FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           SA          T  L+ LI + V F K+   HPATRSFQA+RIF+N+E++EL   L SA
Sbjct: 178 SAVKNGTEFLSRTSQLAELISQAVPF-KDKHKHPATRSFQAIRIFINSELDELESLLNSA 236

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS--ITKKVV 293
              L   G L ++SFHSLEDR+VK F   +S      + +          Q   I  K +
Sbjct: 237 LDMLAPEGRLSIISFHSLEDRMVKHFMKKQSKGEDIPKGLPLREDQIQRNQKLRIIGKAI 296

Query: 294 VPTQEDVAFNRRSRSAKLRAGMRT 317
            P+  ++  N RSRSA LR   R 
Sbjct: 297 QPSDAEIQANPRSRSAILRVAERI 320


>gi|269120594|ref|YP_003308771.1| S-adenosyl-methyltransferase MraW [Sebaldella termitidis ATCC
           33386]
 gi|268614472|gb|ACZ08840.1| S-adenosyl-methyltransferase MraW [Sebaldella termitidis ATCC
           33386]
          Length = 308

 Score =  354 bits (908), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 106/305 (34%), Positives = 173/305 (56%), Gaps = 10/305 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H PVL ++VI  +      V LD T G  G+++   +  S    VIA+D+D  A+    +
Sbjct: 4   HKPVLFDEVIENIVTNKEGVYLDCTLGGAGHTQGILENTSEKGVVIAIDQDDDAIEFAGK 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + +YKE+  +F+  F  L   +   G   V G++ D+GVSS Q+D  +RGFS++    L
Sbjct: 64  KLENYKERIKIFKDNFKNLDTVLYMAGYEKVSGILMDIGVSSYQLDDPERGFSYKYEAKL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+ +  ISA +V+N+ + +++  IL   GEE ++ RIA  I + R+    +TT +L+
Sbjct: 124 DMRMNKNAKISAYEVINEFSEQEIADILYKYGEEPKSRRIARKITEARKEKKIETTTELA 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            ++ + +   K+ + HPA R+FQA+R++VN E+E L + L  A + L+  G L+V++FHS
Sbjct: 184 DIVIRAI--GKSMKRHPAKRTFQAVRMYVNQELEVLEEALEKAVELLEDRGRLLVITFHS 241

Query: 253 LEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK  F           +  I      ++ + ITKK +V  + ++  N R+ SAKL
Sbjct: 242 LEDRIVKNKFREFEKPCKCPPNIPICVCGKESLGKVITKKPIVAGELELNDNSRAHSAKL 301

Query: 312 RAGMR 316
           R   R
Sbjct: 302 RVFER 306


>gi|294635001|ref|ZP_06713518.1| S-adenosyl-methyltransferase MraW [Edwardsiella tarda ATCC 23685]
 gi|291091600|gb|EFE24161.1| S-adenosyl-methyltransferase MraW [Edwardsiella tarda ATCC 23685]
          Length = 314

 Score =  354 bits (908), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 125/313 (39%), Positives = 185/313 (59%), Gaps = 20/313 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H  VLL++ +A LN     + +D TFG GG+SR           +IA+DRDP A++    
Sbjct: 7   HKTVLLDEAVAGLNLRSDGIYIDGTFGRGGHSRLILSQLGAEGRLIAIDRDPQAIAAAA- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +    +FS+    FS L +YV + G    +DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 66  --QINDARFSIVHGPFSALAEYVEELGLVGRIDGILLDLGVSSPQLDDPERGFSFMRDGP 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTTQD 190
           LDMRM  S G+SA+D + QA  +D+  +L   GEE+ A RIA AIV+R R  AP   T++
Sbjct: 124 LDMRMDPSRGLSAADWLMQAEEEDIAWVLKTFGEERFAKRIARAIVERNRTEAPLTRTRE 183

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L++LI +   F + ++ HPATRSFQA+RI++N+E++E+ + L  A   L   G L V+SF
Sbjct: 184 LAALISEASPFKEKHK-HPATRSFQAIRIYINSELDEIERALEGALAVLAPAGRLSVISF 242

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNRR 305
           HSLEDRLVK+F    S      + +  + A          +++ K+  +P +++VA N R
Sbjct: 243 HSLEDRLVKRFIRQYSRGPQVPKGLPLTEAQLQAQGGPQLKALGKR--MPGEQEVANNPR 300

Query: 306 SRSAKLRAGMRTV 318
           +RS+ LR   R  
Sbjct: 301 ARSSVLRVAERIA 313


>gi|296110609|ref|YP_003620990.1| cell division protein MraW [Leuconostoc kimchii IMSNU 11154]
 gi|295832140|gb|ADG40021.1| cell division protein MraW [Leuconostoc kimchii IMSNU 11154]
          Length = 313

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 109/311 (35%), Positives = 166/311 (53%), Gaps = 10/311 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73
           T  +HV VLL + +ALLN  P  + +DAT G GG++    K      + + D+D  A+  
Sbjct: 2   TEFEHVTVLLHEAVALLNIKPDGLYVDATLGGGGHTGEILKQLTSGTLYSFDQDDLAIRY 61

Query: 74  GQETMRD--YKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQ 128
            +E   D     +  L    F  L   + ++GV   DG+++DLGVSS+Q D G RGFS+ 
Sbjct: 62  NREQFADDIQAGKLVLIHQNFRTLTSALAERGVTQVDGIIYDLGVSSVQFDDGQRGFSYN 121

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
               LDMRM     ++A  +VN  +  +L RIL   GE++   +IA  I   R++ P  T
Sbjct: 122 YDADLDMRMDQRQNLTAKIIVNDWSFHELLRILSRYGEDRFPKQIARKIESHREAQPINT 181

Query: 188 TQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T +L  +I++ +   ++    HPA R+FQALRI VN+E+  L   L  A   L   G + 
Sbjct: 182 TFELVDIIKEAIPAPARRKGGHPAKRTFQALRIAVNDELGALEDSLTQAIALLAPSGRIS 241

Query: 247 VVSFHSLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
            ++F SLEDRLVK+ F  + S   + V   +      A +  +T+K ++P++ ++  N R
Sbjct: 242 AITFQSLEDRLVKQMFREKTSTPELPVGLPVLPGQFEADYTLLTRKPILPSEHEMTINHR 301

Query: 306 SRSAKLRAGMR 316
           S SAKLR   R
Sbjct: 302 SESAKLRGIER 312


>gi|284053843|ref|ZP_06384053.1| S-adenosyl-methyltransferase MraW [Arthrospira platensis str.
           Paraca]
          Length = 312

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 118/311 (37%), Positives = 168/311 (54%), Gaps = 30/311 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCG--- 74
           H+PVL  ++I  L    G   LDAT G GG+++   +   NV   A+DRD  A++     
Sbjct: 19  HIPVLGRELIEGLAVQEGGHYLDATVGGGGHTKMIFQGAPNVRVTAIDRDLEAIAAAKSM 78

Query: 75  -QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             +TM +  ++   +   FSQ          DG++ DLGV+S Q+D   RGFSF+  GPL
Sbjct: 79  LMDTMGNCGDRLQFWHGNFSQYPS--SPSQFDGIIADLGVNSHQLDTPGRGFSFRHCGPL 136

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+    +SA++++N  + K L  I    GEE+ + RIA  IV++R   PFQTT+ L+
Sbjct: 137 DMRMNPQDPLSAAEIINTWDEKQLADIFYTYGEERLSRRIARQIVQKR---PFQTTEQLA 193

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             I   V    +  RIHPATR FQALRI VN E+  L   L +A   LK GG + ++SFH
Sbjct: 194 GAIANCVPSKYRYGRIHPATRVFQALRIAVNGELSALETFLETAPTWLKPGGRIGIISFH 253

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR VK  F                  H  + + +TKK + P  ++++ N R+RSAKL
Sbjct: 254 SLEDRPVKHGFR-----------------HHPLLKVLTKKPITPQPDEISQNPRARSAKL 296

Query: 312 RAGMRTVERSI 322
           R   R    ++
Sbjct: 297 RLAQRNTNETL 307


>gi|284039278|ref|YP_003389208.1| S-adenosyl-methyltransferase MraW [Spirosoma linguale DSM 74]
 gi|283818571|gb|ADB40409.1| S-adenosyl-methyltransferase MraW [Spirosoma linguale DSM 74]
          Length = 301

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 114/303 (37%), Positives = 161/303 (53%), Gaps = 13/303 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77
           H PVLL+  I  LN  PG   +D TFG GG+SR       G  +   D+D  A +  Q  
Sbjct: 5   HEPVLLQACIDGLNLQPGGTYVDITFGGGGHSREILNQLEGGKLFGFDQDADARANAQ-- 62

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
                 + +   + F  ++ Y+       VDG++ DLG+SS QID  +RGFS +    LD
Sbjct: 63  -AIGDSRLTFVASNFRNIKRYLRLYKAEQVDGILADLGISSHQIDTPERGFSTRFDADLD 121

Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM+ +   +A  VVN+    +L RILG+ GE   A   A A+V  R + P +T  DL +
Sbjct: 122 MRMNQNADKTARQVVNEYPEAELHRILGMYGEITNARTAAAALVSARSNRPLKTVNDLKA 181

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
            +Q+     K N+     + FQALRI VN E++ L + L      LK GG L+V+S+HSL
Sbjct: 182 ALQRLAPRGKENK--YFAQVFQALRIEVNEELQALEEFLEQVPDILKPGGRLVVMSYHSL 239

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           EDRLVK F      +    + +  ++  P   QSIT+K V  T E++A N R+RSAKLR 
Sbjct: 240 EDRLVKNFINKGKFQGEVEKDLFGNDLKP--LQSITRKPVEATPEEIARNPRARSAKLRI 297

Query: 314 GMR 316
             +
Sbjct: 298 AEK 300


>gi|331016726|gb|EGH96782.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 313

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 112/307 (36%), Positives = 174/307 (56%), Gaps = 12/307 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H+ VLLE+ +  L        LD TFG GG+SR           ++  D+DP A++ GQ 
Sbjct: 7   HITVLLEEAVEALAVRADGCYLDGTFGRGGHSRLILNHLGPDGRLLGFDKDPQAIATGQA 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            +     +F + Q +F++L     + G    V G++ DLGVSS Q+D  +RGFSF   GP
Sbjct: 67  -LAAEDGRFVIVQRSFAELGSQAQELGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDGP 125

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G+SA++ +  A  +++ R+    GEE+ A R+A+A+V+RR+  PF+ T DL
Sbjct: 126 LDMRMDPTRGVSAAEFIASAPAEEIARVFKEYGEERFAKRMANAVVQRREIQPFERTADL 185

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + +++      +  + +PATR+FQ LRI VNNE+ +L  GL +A ++L+ GG L+V+SFH
Sbjct: 186 AEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAAMESLEVGGRLVVISFH 244

Query: 252 SLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK F    + G+   +   +P        +  I  K    +  +   N RSRSA
Sbjct: 245 SLEDRIVKLFMRKLAKGEADNMPRNLPIQYKAFEPKIKIHGKAQFASDVETKANPRSRSA 304

Query: 310 KLRAGMR 316
            +R   +
Sbjct: 305 VMRVAEK 311


>gi|294664073|ref|ZP_06729474.1| S-adenosyl-methyltransferase MraW [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292606158|gb|EFF49408.1| S-adenosyl-methyltransferase MraW [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 347

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 119/309 (38%), Positives = 174/309 (56%), Gaps = 7/309 (2%)

Query: 12  AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDP 68
            +  +   HVPVL  +V+  L        LD TFG GG++R   +    G  ++ +D+DP
Sbjct: 10  PVSQSPAAHVPVLYTQVLDGLQVTENGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDP 69

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
            A++   E       + S+ + +F+ L   V    VDG++ DLGVSS Q+D   RGFSF 
Sbjct: 70  DAIAVA-EHSFGGDARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLDVAGRGFSFG 128

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           K GPLDMRM   SG SA++ + QA+ +++  +L   GEE+Q+ RIA AIV RR   P   
Sbjct: 129 KDGPLDMRMDPDSGQSAAEWLAQASDREIADVLWTYGEERQSRRIARAIVARRAEQPLLR 188

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T  L+ LI   +    +++ HPATRSFQA+RI +N E+ +L  GL +A  ALK GG L V
Sbjct: 189 TAQLADLIASVMPRG-DSKTHPATRSFQAIRIHINRELADLEAGLDAALGALKPGGRLAV 247

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +SFHSLEDR+VK+F A  +    + R +  +    A  Q ++   +     ++  N R+R
Sbjct: 248 ISFHSLEDRIVKQFMARYAKAPPSNRRLPEAQPFVATLQLVS-GAIKADDAELHVNPRAR 306

Query: 308 SAKLRAGMR 316
           SA LR   +
Sbjct: 307 SAVLRVAEK 315


>gi|301510055|ref|ZP_07235292.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii AB058]
          Length = 307

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 110/310 (35%), Positives = 172/310 (55%), Gaps = 16/310 (5%)

Query: 20  HVPVLLEKVIA-LLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
           H+ VLL + +  LL      V +DATFG GG++R         + V A D+DP A+    
Sbjct: 3   HISVLLFETVESLLADRTIGVYIDATFGRGGHTRLLLSKLDENARVYAFDKDPQALEVA- 61

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +     +F++  A+F+ +++ + + GV   DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 62  AALAQEDPRFTIIHASFADIKEKMQEIGVQSVDGIMADLGVSSPQLDQAERGFSFMQDGP 121

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G++A++ + +   +DL  I+   GEE+ + RIA AI +        TT  L
Sbjct: 122 LDMRMDNSKGLTAAEWLLEVEEEDLANIIYQYGEERYSRRIARAIKQA---GKLDTTAQL 178

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + +++      + ++ HPATR+FQA+RI +N E++++   L  A   LK  G L V+SFH
Sbjct: 179 AEIVKTAHPKWEKHK-HPATRTFQAIRIAINKELDDIEVFLPQAVDLLKPKGRLSVISFH 237

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNA-HPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDRL+K+F    S         +P         + I++  V  ++E+V  N RSRSA 
Sbjct: 238 SLEDRLIKQFIQKESTLAEDSGWGMPQQQVDTRRLKKISR--VRASEEEVKANPRSRSAW 295

Query: 311 LRAGMRTVER 320
           LR   R  ++
Sbjct: 296 LRVAERLEQK 305


>gi|320540413|ref|ZP_08040063.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Serratia symbiotica str. Tucson]
 gi|320029344|gb|EFW11373.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Serratia symbiotica str. Tucson]
          Length = 313

 Score =  353 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 117/311 (37%), Positives = 174/311 (55%), Gaps = 15/311 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H  VLL++ +  LN       +D TFG GG+S            ++A+DRDP A++  +
Sbjct: 6   KHATVLLDEAVNGLNIRSNGTYIDGTFGRGGHSCLILSQLGPEGRLLAIDRDPQAIAAAK 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +F++    FS L DYV ++     +DGV+ DLGVSS Q+D  +RGFSF + G
Sbjct: 66  SI---DDPRFTIVHGPFSALSDYVRERELVGQIDGVLLDLGVSSPQLDDAERGFSFMRDG 122

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  S G+SA++ + +A   D+  +L   GEE+ A RIA AIV+R +  P   T+ 
Sbjct: 123 PLDMRMDPSTGLSAAEWLMKAEADDIAWVLKTFGEERFAKRIACAIVERNRVEPMTRTKQ 182

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ LI       + ++ HPATRSFQA+RI++N+E+EE+   L    + L   G L ++SF
Sbjct: 183 LADLIAGASPIREKHK-HPATRSFQAIRIYINSELEEIECALNGTLEVLAPQGRLSIISF 241

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNRRSR 307
           HSLEDR+VK+F    S    A   +  +          T KV+   +P++ +VA N R+R
Sbjct: 242 HSLEDRIVKRFIRHHSRGAQAPAGIPLTEEQLRSMGGRTLKVLGKMMPSEAEVAGNPRAR 301

Query: 308 SAKLRAGMRTV 318
           S+ LR   R +
Sbjct: 302 SSVLRIAQRVL 312


>gi|319776629|ref|YP_004139117.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Haemophilus influenzae F3047]
 gi|329124142|ref|ZP_08252689.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Haemophilus aegyptius ATCC 11116]
 gi|317451220|emb|CBY87453.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Haemophilus influenzae F3047]
 gi|327467567|gb|EGF13065.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Haemophilus aegyptius ATCC 11116]
          Length = 321

 Score =  353 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 122/325 (37%), Positives = 174/325 (53%), Gaps = 20/325 (6%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M+S    +  +H+ VLL + +  L      + +D TFG GG+SR           +IA+D
Sbjct: 1   MNSENSFSSSEHITVLLHEAVNGLALKENGIYIDGTFGRGGHSRFILSQLSSNGRLIAVD 60

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCG 121
           RDP A++   +       +F +   +FS + +          +DG++ DLGVSS Q+D  
Sbjct: 61  RDPRAIAEAHKI---QDSRFQIEHNSFSHIPEICDKLNLVGKIDGILLDLGVSSPQLDEA 117

Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF K GPLDMRM  + G+SA + + Q +++DLT +L   GEE+ A RIA AIV   
Sbjct: 118 ERGFSFMKDGPLDMRMDTTQGLSAEEWLKQVSIEDLTWVLKTFGEERFAKRIATAIVDFN 177

Query: 181 QSAP------FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234
           +SA          T  L+ LI + V F K+   HPATRSFQA+RIF+N+E++EL   L S
Sbjct: 178 KSAVKNGTEFLSRTSQLAELISQAVPF-KDKHKHPATRSFQAIRIFINSELDELESLLNS 236

Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS--ITKKV 292
           A   L   G L ++SFHSLEDR+VK F   +S      + +          Q   I  K 
Sbjct: 237 ALDMLAPEGRLSIISFHSLEDRMVKHFMKKQSKGEDIPKGLPLREDQIQRNQKLRIIGKA 296

Query: 293 VVPTQEDVAFNRRSRSAKLRAGMRT 317
           + P+  ++  N RSRSA LR   R 
Sbjct: 297 IQPSDAEIQANPRSRSAILRVAERI 321


>gi|59712816|ref|YP_205592.1| S-adenosyl-methyltransferase MraW [Vibrio fischeri ES114]
 gi|68565406|sp|Q5E2P2|RSMH_VIBF1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|59480917|gb|AAW86704.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Vibrio fischeri ES114]
          Length = 316

 Score =  353 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 117/312 (37%), Positives = 165/312 (52%), Gaps = 18/312 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           HV VLL + I  L   P  + +D TFG GG+SR           + ++DRDP A++  + 
Sbjct: 7   HVSVLLHESIDGLAIKPDGIYIDGTFGRGGHSRQILSQLGENGRLYSIDRDPQAIAEAKT 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  +F++    FS L+ YV +      +DGV+ DLGVSS Q+D  +RGFSF K GP
Sbjct: 67  I---TDPKFTIIHGPFSGLKQYVEELDLVGKIDGVLLDLGVSSPQLDDAERGFSFMKDGP 123

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---PFQTT 188
           LDMRM   SGI  S  + +A+V+D+T ++   GE+K A RIA  IV   ++    P   T
Sbjct: 124 LDMRMDPTSGIPVSQWLQEADVEDITWVIREFGEDKHAWRIAKGIVAYLENEENEPLTRT 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ LI +    S   + HPATR+FQA RI++N+E++E+   L+ A   L   G L V+
Sbjct: 184 SQLAKLISEVAPKSFKEKKHPATRAFQAFRIYINSELDEIDTALKGALDVLAPEGRLSVI 243

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVVVPTQEDVAFNR 304
           SFHSLEDR+VK F    S        +  +                K + PT+ +V  N 
Sbjct: 244 SFHSLEDRMVKHFIRKESKGPQVPHGLPLTEEQIKALGSAKMKPVGKAIKPTKNEVNENV 303

Query: 305 RSRSAKLRAGMR 316
           RSRS+ LR   R
Sbjct: 304 RSRSSVLRIAER 315


>gi|301169870|emb|CBW29474.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Haemophilus influenzae 10810]
 gi|309973403|gb|ADO96604.1| 16S rRNA m(4)C1402 methyltranserfase [Haemophilus influenzae R2846]
          Length = 321

 Score =  353 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 122/325 (37%), Positives = 174/325 (53%), Gaps = 20/325 (6%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M+S    +  +H+ VLL + +  L      + +D TFG GG+SR           +IA+D
Sbjct: 1   MNSENSFSSSEHITVLLHEAVNGLALKENGIYIDGTFGRGGHSRFILSQLSSNGRLIAVD 60

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCG 121
           RDP A++   +       +F +   +FS + +          +DG++ DLGVSS Q+D  
Sbjct: 61  RDPRAIAEAHKI---QDSRFQIEHNSFSHIPEICDKLNLVGKIDGILLDLGVSSPQLDEA 117

Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF K GPLDMRM  + G+SA + + Q +++DLT +L   GEE+ A RIA AIV   
Sbjct: 118 ERGFSFMKDGPLDMRMDTTQGLSAEEWLKQVSIEDLTWVLKTFGEERFAKRIATAIVDFN 177

Query: 181 QSAP------FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234
           +SA          T  L+ LI + V F K+   HPATRSFQA+RIF+N+E++EL   L S
Sbjct: 178 KSAVKNSTEFLSRTSQLAELISQAVPF-KDKHKHPATRSFQAIRIFINSELDELESLLNS 236

Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS--ITKKV 292
           A   L   G L ++SFHSLEDR+VK F   +S      + +          Q   I  K 
Sbjct: 237 ALDMLAPEGRLSIISFHSLEDRMVKHFMKKQSKGEDIPKGLPLREDQIQRNQKLRIIGKA 296

Query: 293 VVPTQEDVAFNRRSRSAKLRAGMRT 317
           + P+  ++  N RSRSA LR   R 
Sbjct: 297 IQPSDAEIQANPRSRSAILRVAERI 321


>gi|317484855|ref|ZP_07943747.1| MraW methylase [Bilophila wadsworthia 3_1_6]
 gi|316923901|gb|EFV45095.1| MraW methylase [Bilophila wadsworthia 3_1_6]
          Length = 355

 Score =  353 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 118/327 (36%), Positives = 178/327 (54%), Gaps = 13/327 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+ VLL + +  L P  G   LD T G GG+S +  +       +  LDRD  A+   + 
Sbjct: 8   HISVLLNEAVDALAPKAGGRYLDGTVGMGGHSFAIMERTGGEGFLCGLDRDTQALELARI 67

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  + ++  L    +S+ +  +   G   VDG + D+GVSS+QID  +RGFSF   GPL
Sbjct: 68  RLAPFGDRVHLVHTRYSEFEAALDGIGWDAVDGALIDIGVSSLQIDSAERGFSFSSDGPL 127

Query: 134 DMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           DMRM      +  S +VN+A ++DL  I+   GE+ QA RIA AIV+ R   P +TT +L
Sbjct: 128 DMRMDRDSEELPVSRLVNRAKLEDLKDIIERYGEDPQAGRIARAIVEARVRKPIETTGEL 187

Query: 192 SSLIQKTVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           ++L+++    +   +   HPATR+FQALR+ VN+EI EL + L +    LK GG + V+S
Sbjct: 188 AALVERAYPAAWRAKARNHPATRTFQALRMAVNDEIGELERFLDTILGRLKPGGRVAVIS 247

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK    + +   +  +H  +    H      +T K V P++ ++  N R+ S
Sbjct: 248 FHSLEDRVVKHRMKAWAQGCICPKHIPVCVCHHAPEALLVTPKPVCPSERELMLNPRAGS 307

Query: 309 AKLRAGMRTV--ERSIEDDSFVHLPRL 333
           AKLR   +     R  ++DS     RL
Sbjct: 308 AKLRVAEKLDPHARKADEDSGEEAARL 334


>gi|294627718|ref|ZP_06706300.1| S-adenosyl-methyltransferase MraW [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292598070|gb|EFF42225.1| S-adenosyl-methyltransferase MraW [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 347

 Score =  353 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 119/309 (38%), Positives = 174/309 (56%), Gaps = 7/309 (2%)

Query: 12  AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDP 68
            +  +   HVPVL  +V+  L        LD TFG GG++R   +    G  ++ +D+DP
Sbjct: 10  PVSQSPAAHVPVLYTQVLDGLQVTENGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDP 69

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
            A++   E       + S+ + +F+ L   V    VDG++ DLGVSS Q+D   RGFSF 
Sbjct: 70  DAIAVA-EHSFGGDARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLDVAGRGFSFG 128

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           K GPLDMRM   SG SA++ + QA+ +++  +L   GEE+Q+ RIA AIV RR   P   
Sbjct: 129 KDGPLDMRMDPDSGQSAAEWLAQASDREIADVLWTYGEERQSRRIARAIVARRAEQPLLR 188

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T  L+ LI   +    +++ HPATRSFQA+RI +N E+ +L  GL +A  ALK GG L V
Sbjct: 189 TAQLADLIASVMPRG-DSKTHPATRSFQAIRIHINRELADLEAGLDAALGALKPGGRLAV 247

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +SFHSLEDR+VK+F A  +    + R +  +    A  Q ++   +     ++  N R+R
Sbjct: 248 ISFHSLEDRIVKQFMARYAKAPPSNRRLPEAQPFVATLQLVS-GAIKADDAELHVNPRAR 306

Query: 308 SAKLRAGMR 316
           SA LR   +
Sbjct: 307 SAVLRVAEK 315


>gi|213158956|ref|YP_002320954.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii AB0057]
 gi|301345409|ref|ZP_07226150.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii AB056]
 gi|301596009|ref|ZP_07241017.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii AB059]
 gi|263433709|sp|B7IAX1|RSMH_ACIB5 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|213058116|gb|ACJ43018.1| S-adenosyl-methyltransferase MraW [Acinetobacter baumannii AB0057]
          Length = 307

 Score =  353 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 110/310 (35%), Positives = 171/310 (55%), Gaps = 16/310 (5%)

Query: 20  HVPVLLEKVIA-LLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
           H+ VLL + +  LL      V +DATFG GG++R         + V A D+DP A+    
Sbjct: 3   HISVLLFETVESLLADRTTGVYIDATFGRGGHTRLLLSKLDENARVYAFDKDPQALEVA- 61

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +     +F++  A+F+ +++ + + GV   DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 62  AALAQEDPRFTIIHASFADIKEKMQEIGVQSVDGIMADLGVSSPQLDQAERGFSFMQDGP 121

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G++A + + +   +DL  I+   GEE+ + RIA AI +        TT  L
Sbjct: 122 LDMRMDNSKGLTADEWLLEVEEEDLANIIYQYGEERYSRRIARAIKQA---GKLDTTAQL 178

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + +++      + ++ HPATR+FQA+RI +N E++++   L  A   LK  G L V+SFH
Sbjct: 179 AEIVKTAHPKWEKHK-HPATRTFQAIRIAINKELDDIEVFLPQAVDLLKPKGRLSVISFH 237

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNA-HPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDRL+K+F    S         +P         + I++  V  ++E+V  N RSRSA 
Sbjct: 238 SLEDRLIKQFIQKESTLAEDSGWGMPQQQVDTRRLKKISR--VRASEEEVKANPRSRSAW 295

Query: 311 LRAGMRTVER 320
           LR   R  ++
Sbjct: 296 LRVAERLEQK 305


>gi|291571686|dbj|BAI93958.1| S-adenosyl-methyltransferase MraW [Arthrospira platensis NIES-39]
          Length = 312

 Score =  353 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 118/311 (37%), Positives = 168/311 (54%), Gaps = 30/311 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCG--- 74
           H+PVL  ++I  L    G   LDAT G GG+++   +   NV   A+DRD  A++     
Sbjct: 19  HIPVLGRELIEGLAVQEGGHYLDATVGGGGHTKMIFQGAPNVRVTAIDRDLEAIAAAKSM 78

Query: 75  -QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             +TM +  ++   +   FSQ          DG++ DLGV+S Q+D   RGFSF+  GPL
Sbjct: 79  LMDTMGNCGDRLQFWHGNFSQYPS--SPSQFDGIIADLGVNSHQLDTPGRGFSFRHCGPL 136

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+    +SA++++N  + K L  I    GEE+ + RIA  IV++R   PFQTT+ L+
Sbjct: 137 DMRMNPQDPLSAAEIINTWDEKQLADIFYTYGEERLSRRIARQIVEKR---PFQTTEQLA 193

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             I   V    +  RIHPATR FQALRI VN E+  L   L +A   LK GG + ++SFH
Sbjct: 194 GAIANCVPSKYRYGRIHPATRVFQALRIAVNGELSALETFLETAPTWLKPGGRIGIISFH 253

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR VK  F                  H  + + +TKK + P  ++++ N R+RSAKL
Sbjct: 254 SLEDRPVKHGFR-----------------HHPLLKVLTKKPITPQPDEISQNPRARSAKL 296

Query: 312 RAGMRTVERSI 322
           R   R    ++
Sbjct: 297 RLAQRNTNETL 307


>gi|154706930|ref|YP_001425301.1| S-adenosyl-methyltransferase MraW [Coxiella burnetii Dugway
           5J108-111]
 gi|263446157|sp|A9KET2|RSMH_COXBN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|154356216|gb|ABS77678.1| S-adenosyl-methyltransferase [Coxiella burnetii Dugway 5J108-111]
          Length = 307

 Score =  353 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 118/305 (38%), Positives = 179/305 (58%), Gaps = 11/305 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H PVL ++V+  L   P  + +D TFG GG+S    +       ++A+D+DP AV+   +
Sbjct: 4   HKPVLFDEVMEGLAIRPDGIYVDGTFGRGGHSFGILQRLGPNGRLMAMDKDPDAVAVANK 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            + +   +FS+   TF+ LQ  V D+G    V+G++ D+GVSS Q++   RGFSF K GP
Sbjct: 64  ALFE-DARFSIVHETFANLQKAVRDRGWEGKVNGILLDIGVSSPQLEDAKRGFSFSKDGP 122

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+    + A+  +NQA ++D+ R+L   GEE+ A RIA AIV  R+  P   TQ+L
Sbjct: 123 LDMRMNPKQSMDAASWINQAAMEDIRRVLWNYGEERFAKRIAQAIVNAREEKPITRTQEL 182

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           S ++ K     +  + HPATR+FQA+RIF+N E++EL + L    + L  GG L V+SFH
Sbjct: 183 SDIVIKAYP-QRKIKKHPATRTFQAIRIFINRELDELRECLPQCLETLAVGGRLCVISFH 241

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDRLVK+F    S   +     I +       + +   ++ PT+ ++  N R+RSA+L
Sbjct: 242 SLEDRLVKRFIQKESRDHLPREIPILAKDIKHRLKPLGS-LIRPTEAEIKKNPRARSARL 300

Query: 312 RAGMR 316
           R   +
Sbjct: 301 RIVEK 305


>gi|304413635|ref|ZP_07395079.1| S-adenosyl-dependent methyltransferase [Candidatus Regiella
           insecticola LSR1]
 gi|304283726|gb|EFL92120.1| S-adenosyl-dependent methyltransferase [Candidatus Regiella
           insecticola LSR1]
          Length = 313

 Score =  353 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 121/311 (38%), Positives = 174/311 (55%), Gaps = 15/311 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H  VLLE+ +  LN     + +D TFG GG+SR           +IA+DRDP AV   +
Sbjct: 6   KHESVLLEQAVHCLNLRDDGIYVDGTFGLGGHSRLILSRLGQQGRLIAIDRDPQAVEVAK 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +FS+    FS+L  Y  +      +DGV+FDLGVSS Q+D   RGFSF + G
Sbjct: 66  SI---TDPRFSIIHGPFSELARYAQESDLIGRIDGVLFDLGVSSPQLDNPQRGFSFMRDG 122

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  S G+SA+  + +A+  ++  +L   GEE+ A R+A AIV+R Q  P   TQ+
Sbjct: 123 PLDMRMDPSRGLSAAQWLMKASADEIAWVLKTFGEERFAKRLARAIVERNQQQPMHRTQE 182

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ LI   +   + ++ HPATRSFQA+RI++N+E+EE+ + L ++   L   G + V+SF
Sbjct: 183 LADLIVNILPMREKHK-HPATRSFQAIRIYINSELEEITRALEASLSVLAPKGRISVISF 241

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF---QSITKKVVVPTQEDVAFNRRSR 307
           HSLEDR+VK F   +S        M  +     +       T   ++P+ E+VA N R+R
Sbjct: 242 HSLEDRIVKNFIRQQSRGPQIPVGMPLTETQLRLMGGANLKTMGKMMPSAEEVAENPRAR 301

Query: 308 SAKLRAGMRTV 318
           SA LR   R  
Sbjct: 302 SAVLRFAERIA 312


>gi|293610699|ref|ZP_06692999.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827043|gb|EFF85408.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 307

 Score =  353 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 110/310 (35%), Positives = 172/310 (55%), Gaps = 16/310 (5%)

Query: 20  HVPVLLEKVIA-LLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
           H+ VLL + +  LL      V +DATFG GG++R         + V A D+DP A+    
Sbjct: 3   HISVLLFETVESLLADRTTGVYIDATFGRGGHTRLLLSKLDENARVYAFDKDPQALEVA- 61

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +     +F++  A+F+ +++ + + GV   DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 62  AALAQEDPRFTIIHASFADIKEKMQEIGVMSVDGIMADLGVSSPQLDQAERGFSFMQDGP 121

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G++A++ + +   + L  I+   GEE+ + RIA AI +        TT  L
Sbjct: 122 LDMRMDNSKGLTAAEWLLEIEEEQLANIIYQYGEERYSRRIAKAIKQA---GKLDTTAQL 178

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + L++      + ++ HPATR+FQA+RI +N E++++   L  A   LK  G L V+SFH
Sbjct: 179 AELVKTAHPKWEKHK-HPATRTFQAIRIAINKELDDIEVFLPQAVDLLKPKGRLSVISFH 237

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNA-HPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDRL+K+F    S     +   +P         + I++  V  ++E+V  N RSRSA 
Sbjct: 238 SLEDRLIKQFIQKESTLAEDIGWGMPQQQVDTRRLKKISR--VRASEEEVKANPRSRSAW 295

Query: 311 LRAGMRTVER 320
           LR   R  ++
Sbjct: 296 LRVAERLEQK 305


>gi|218437172|ref|YP_002375501.1| S-adenosyl-methyltransferase MraW [Cyanothece sp. PCC 7424]
 gi|263447401|sp|B7K9F0|RSMH_CYAP7 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|218169900|gb|ACK68633.1| S-adenosyl-methyltransferase MraW [Cyanothece sp. PCC 7424]
          Length = 299

 Score =  353 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 113/314 (35%), Positives = 173/314 (55%), Gaps = 28/314 (8%)

Query: 8   TMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALD 65
            MS+ ++     H+PVL +++I  L+  PG   LDAT G GG+SR   +   +V   A+D
Sbjct: 6   QMST-VNSLAFIHIPVLTQELIKGLDICPGGHYLDATVGGGGHSRQILETYGDVQVTAID 64

Query: 66  RDPFAVSCGQETMRDYK-EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRG 124
           RD  A++     + DY  ++ + +   F+       +   DG++ DLGVSS Q+D  +RG
Sbjct: 65  RDEVAIAAATTNLADYNTDRLTFWTGNFADYDP--GNLKFDGIIADLGVSSPQLDSPERG 122

Query: 125 FSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           FSF+   PLDMRM      +A+D++N  +  +L  +    GEE+ + +IA  IVK+R   
Sbjct: 123 FSFRLDAPLDMRMDRRQSTTAADIINSYSEIELANLFYNYGEERLSRQIAKQIVKQR--- 179

Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           PF +T +L+ +I ++V    +  RIHPATR FQ LRI VN E++ L   L  +   LK  
Sbjct: 180 PFFSTTELAEVISRSVPPKYRYGRIHPATRVFQGLRIAVNQELDSLESFLAKSPSWLKTN 239

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G++ ++SFHSLEDR+VK    +                   + + +TKK ++P  ++ A 
Sbjct: 240 GIIGIISFHSLEDRIVKHQLRAS-----------------PLLKVLTKKPIIPQSDEQAK 282

Query: 303 NRRSRSAKLRAGMR 316
           N RSRSAKLR   R
Sbjct: 283 NPRSRSAKLRLAQR 296


>gi|297566101|ref|YP_003685073.1| S-adenosyl-methyltransferase MraW [Meiothermus silvanus DSM 9946]
 gi|296850550|gb|ADH63565.1| S-adenosyl-methyltransferase MraW [Meiothermus silvanus DSM 9946]
          Length = 294

 Score =  353 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 119/307 (38%), Positives = 175/307 (57%), Gaps = 24/307 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+ VL ++ +  LN  PG + +DAT G GG+++   + G  V+  D+DP A+   +  + 
Sbjct: 7   HISVLYDEALNYLNVKPGGLYVDATLGGGGHTQGILQRGGRVVGFDQDPAAIERARNLLL 66

Query: 80  D--YKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
                 Q +L +A F  LQ  +   G   VDGV+ DLGVSS   D  +RGFS++  GPLD
Sbjct: 67  PGLSLGQLTLVEANFRDLQPKLHALGIERVDGVLADLGVSSFHFDDPERGFSYRLEGPLD 126

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRM   G +A++VVN+  V++L RIL  LGEE +A RIA  I + R+  P +TT +L+ +
Sbjct: 127 MRMGKEGQTAAEVVNELEVEELARILRELGEEPKAWRIARFIEEARERKPIETTTELAEI 186

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           +++   F      HPA ++FQALRI+VN+E+  L + L +A   L   G L+V+SFHSLE
Sbjct: 187 VRRATGF--RGAGHPARKTFQALRIYVNDELGALRELLEAAVNVLAPQGRLVVISFHSLE 244

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           DR+VK F  +                     + +TKK + P +E+   N R+RSAKLRA 
Sbjct: 245 DRIVKHFLKN-----------------EPRLRVLTKKPLEPGEEEARENPRARSAKLRAA 287

Query: 315 MRTVERS 321
            R  E +
Sbjct: 288 ERLREAA 294


>gi|330997819|ref|ZP_08321654.1| S-adenosyl-methyltransferase MraW [Paraprevotella xylaniphila YIT
           11841]
 gi|329569707|gb|EGG51472.1| S-adenosyl-methyltransferase MraW [Paraprevotella xylaniphila YIT
           11841]
          Length = 302

 Score =  353 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 104/315 (33%), Positives = 172/315 (54%), Gaps = 21/315 (6%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALD 65
           M  A++     HVPVLL++ +  L   P  V  D TFG GG+SR+         ++ + D
Sbjct: 1   MEEAVY-----HVPVLLKECVDGLVVNPAGVYADVTFGGGGHSRAIVSRLDTAGHLYSFD 55

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGD 122
           +D  A +           +F+  ++ F  L++++   GV   DG++ DLGVSS   D  +
Sbjct: 56  QDEDAEANIVA-----DGRFTFVRSNFRYLKNWMRYYGVGELDGLLADLGVSSHHFDDAE 110

Query: 123 RGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF+  G LDMRM+  + ++A+DV+N    + L  I  + GE K A ++A  +VK R 
Sbjct: 111 RGFSFRFDGRLDMRMNQRAQLTAADVLNDYAEERLADIFYLYGELKNARKLASWVVKARM 170

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
               +TT++   +++    F ++       + FQALRI VN E++ L + L +A + L+ 
Sbjct: 171 HRRIETTEEFMEVVKPL--FERDREKKELAKVFQALRIEVNQEMDALKEMLTAAVELLRP 228

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           GG L+V+++HSLEDR+VK    + + +   ++    +   P   +++  KV+VP +E+  
Sbjct: 229 GGRLVVLTYHSLEDRMVKNLVKTGNVEGKRIQDFYGNVDCP--LRAVHNKVIVPGEEEQR 286

Query: 302 FNRRSRSAKLRAGMR 316
            N RSRSAKLR   +
Sbjct: 287 ANPRSRSAKLRIAEK 301


>gi|309792354|ref|ZP_07686822.1| S-adenosyl-methyltransferase MraW [Oscillochloris trichoides DG6]
 gi|308225575|gb|EFO79335.1| S-adenosyl-methyltransferase MraW [Oscillochloris trichoides DG6]
          Length = 317

 Score =  353 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 125/307 (40%), Positives = 173/307 (56%), Gaps = 16/307 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H+ VL + V A LNP PG + LD T G GG++ +  +       +I +D DP A++  Q 
Sbjct: 16  HISVLAQPVQAALNPRPGGIYLDGTLGGGGHALAVLQAAQPDGRLIGIDADPAALAAAQA 75

Query: 77  TMRD---YKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130
            M         +  F   F  +       G+   DG++ DLGVSS Q+D  +RGFSF   
Sbjct: 76  RMAAANIPASSYQFFHGRFGAMAQIARQAGITSCDGILLDLGVSSPQLDWAERGFSFSAD 135

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
           GPLDMR+  + G +A+D+VN  + + L  I+   GEE+ + +IA  IV+RR+ APF+ T 
Sbjct: 136 GPLDMRLDPTQGHTAADLVNTLDEQYLADIIFRYGEERGSRKIARLIVERRKHAPFERTA 195

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           DL++L+ + V      RIHPATR+FQALRI VN E+E+L   L  A   L +GG L V+S
Sbjct: 196 DLAALVARAVGRGGRERIHPATRTFQALRIAVNTELEQLEIALPQAVDLLHSGGRLAVIS 255

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDR+VK F  + SG              P   + ITKK +    E++A N RSRSA
Sbjct: 256 FHSLEDRIVKHFLRAESGYGGNANP------RPPRLRIITKKPLEADAEELAANPRSRSA 309

Query: 310 KLRAGMR 316
           KLR   +
Sbjct: 310 KLRVAEK 316


>gi|145641287|ref|ZP_01796867.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae R3021]
 gi|145274124|gb|EDK13990.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae 22.4-21]
          Length = 321

 Score =  353 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 123/325 (37%), Positives = 175/325 (53%), Gaps = 20/325 (6%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           M+S    +  +H+ VLL + +  L      + +D TFG GG+SR      S    +IA+D
Sbjct: 1   MNSENSFSSSEHITVLLHEAVNGLALKENGIYIDGTFGRGGHSRFILSQLSSNSRLIAVD 60

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCG 121
           RDP A++   +       +F +   +FS + +          +DG++ DLGVSS Q+D  
Sbjct: 61  RDPRAIAEAHKI---QDSRFQIEHNSFSHIPEICDKLNLVGKIDGILLDLGVSSPQLDEA 117

Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF K GPLDMRM  + G+SA + + Q +++DLT +L   GEE+ A RIA AIV   
Sbjct: 118 ERGFSFMKDGPLDMRMDTTQGLSAEEWLKQVSIEDLTWVLKTFGEERFAKRIATAIVDFN 177

Query: 181 QSAP------FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234
           +SA          T  L+ LI + V F K+   HPATRSFQA+RIF+N+E++EL   L S
Sbjct: 178 KSAVKNGTEFLSRTSQLAELISQAVPF-KDKHKHPATRSFQAIRIFINSELDELESLLNS 236

Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS--ITKKV 292
           A   L   G L ++SFHSLEDR+VK F   +S      + +          Q   I  K 
Sbjct: 237 ALDMLAPEGRLSIISFHSLEDRMVKHFMKKQSKGEDIPKGLPLREDQIQRNQKLRIIGKA 296

Query: 293 VVPTQEDVAFNRRSRSAKLRAGMRT 317
           + P+  ++  N RSRSA LR   R 
Sbjct: 297 IQPSDAEIQANPRSRSAILRVAERI 321


>gi|28871551|ref|NP_794170.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213966575|ref|ZP_03394726.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv. tomato
           T1]
 gi|301384710|ref|ZP_07233128.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv. tomato
           Max13]
 gi|302059802|ref|ZP_07251343.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv. tomato
           K40]
 gi|302131749|ref|ZP_07257739.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|38257958|sp|Q87WX7|RSMH_PSESM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|28854802|gb|AAO57865.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213928425|gb|EEB61969.1| S-adenosyl-methyltransferase MraW [Pseudomonas syringae pv. tomato
           T1]
          Length = 313

 Score =  353 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 112/307 (36%), Positives = 174/307 (56%), Gaps = 12/307 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H+ VLLE+ +  L        LD TFG GG+SR           ++  D+DP A++ GQ 
Sbjct: 7   HITVLLEEAVEALAVRADGCYLDGTFGRGGHSRLILNHLGPDGRLLGFDKDPQAIATGQA 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            +     +F + Q +F++L     + G    V G++ DLGVSS Q+D  +RGFSF   GP
Sbjct: 67  -LAAEDGRFVIVQRSFAELGSQAQELGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDGP 125

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G+SA++ +  A  +++ R+    GEE+ A R+A+A+V+RR+  PF+ T DL
Sbjct: 126 LDMRMDPTRGVSAAEFIASAPAEEIARVFKEYGEERFAKRMANAVVQRREIQPFERTADL 185

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + +++      +  + +PATR+FQ LRI VNNE+ +L  GL +A ++L+ GG L+V+SFH
Sbjct: 186 AEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAAMESLEVGGRLVVISFH 244

Query: 252 SLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK F    + G+   +   +P        +  I  K    +  +   N RSRSA
Sbjct: 245 SLEDRIVKLFMRKLAKGEADNMPRNLPIQYKAFEPKIKIHGKAQFASDVETKANPRSRSA 304

Query: 310 KLRAGMR 316
            +R   +
Sbjct: 305 VMRVAEK 311


>gi|170748783|ref|YP_001755043.1| S-adenosyl-methyltransferase MraW [Methylobacterium radiotolerans
           JCM 2831]
 gi|263456464|sp|B1LYT9|RSMH_METRJ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|170655305|gb|ACB24360.1| S-adenosyl-methyltransferase MraW [Methylobacterium radiotolerans
           JCM 2831]
          Length = 353

 Score =  353 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 136/313 (43%), Positives = 190/313 (60%), Gaps = 8/313 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQE 76
            HVPVLL +V+  L    G   +D TFGAGGY+R+         V+A+DRDP A++ GQ 
Sbjct: 23  PHVPVLLAEVVEALGT-EGGTAVDGTFGAGGYTRALLAADPALQVVAIDRDPTAIAGGQA 81

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + +   +  L    F  L   + + G   VD VV D+GVSSMQ+D  +RGFSF+  GPL
Sbjct: 82  LVAESGGRLRLLPGRFGDLDGLLAEAGIAQVDRVVLDIGVSSMQLDAPERGFSFRSDGPL 141

Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           DMRM+C G SA+D+VN+A+   L  I+   GEE+++  +A  I++ R+    +TT  L+ 
Sbjct: 142 DMRMACDGPSAADLVNEADETVLADIIYHFGEERRSRAVARTILEARRRGRIETTAQLAE 201

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           L+   V     + IHPATR+FQ LRI VN+E+ EL + L +AE+ L+ GG L VV+FHSL
Sbjct: 202 LVAGVVRTEPGSHIHPATRTFQGLRIAVNDELGELVRALHAAERVLRPGGRLAVVTFHSL 261

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRSAKL 311
           EDR+VK+FFA+RSG+       +P      V  F+ +TK  V+P + + A N R+RSAKL
Sbjct: 262 EDRIVKQFFAARSGRSAQGSRHLPGGPVETVRSFRPVTKGPVLPGEAETARNPRARSAKL 321

Query: 312 RAGMRTVERSIED 324
           RA  RT     E 
Sbjct: 322 RAAERTESDVPEP 334


>gi|29653474|ref|NP_819166.1| S-adenosyl-methyltransferase [Coxiella burnetii RSA 493]
 gi|153207124|ref|ZP_01945903.1| S-adenosyl-methyltransferase MraW [Coxiella burnetii 'MSU Goat
           Q177']
 gi|161830127|ref|YP_001596084.1| S-adenosyl-methyltransferase MraW [Coxiella burnetii RSA 331]
 gi|165918373|ref|ZP_02218459.1| S-adenosyl-methyltransferase MraW [Coxiella burnetii RSA 334]
 gi|212219401|ref|YP_002306188.1| S-adenosyl-methyltransferase MraW [Coxiella burnetii CbuK_Q154]
 gi|42559465|sp|Q83F35|RSMH_COXBU RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446160|sp|A9NA25|RSMH_COXBR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263447414|sp|B6J5L7|RSMH_COXB1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|29540736|gb|AAO89680.1| S-adenosyl-methyltransferase [Coxiella burnetii RSA 493]
 gi|120576785|gb|EAX33409.1| S-adenosyl-methyltransferase MraW [Coxiella burnetii 'MSU Goat
           Q177']
 gi|161761994|gb|ABX77636.1| S-adenosyl-methyltransferase MraW [Coxiella burnetii RSA 331]
 gi|165917879|gb|EDR36483.1| S-adenosyl-methyltransferase MraW [Coxiella burnetii RSA 334]
 gi|212013663|gb|ACJ21043.1| S-adenosyl-methyltransferase [Coxiella burnetii CbuK_Q154]
          Length = 307

 Score =  353 bits (906), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 118/305 (38%), Positives = 179/305 (58%), Gaps = 11/305 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H PVL ++V+  L   P  + +D TFG GG+S    +       ++A+D+DP AV+   +
Sbjct: 4   HKPVLFDEVMEGLAIRPDGIYVDGTFGRGGHSFGILQRLGPNGRLMAMDKDPDAVAVANK 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            + +   +FS+   TF+ LQ  V D+G    V+G++ D+GVSS Q++   RGFSF K GP
Sbjct: 64  ALFE-DARFSIVHETFANLQKAVRDRGWEGKVNGILLDIGVSSPQLEDAKRGFSFSKDGP 122

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+    + A+  +NQA ++D+ R+L   GEE+ A RIA AIV  R+  P   TQ+L
Sbjct: 123 LDMRMNPKQSMDAASWINQAAMEDIRRVLWNYGEERFAKRIAQAIVNAREEKPITRTQEL 182

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           S ++ K     +  + HPATR+FQA+RIF+N E++EL + L    + L  GG L V+SFH
Sbjct: 183 SDIVIKAYP-QREIKKHPATRTFQAIRIFINRELDELRECLPQCLETLAVGGRLCVISFH 241

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDRLVK+F    S   +     I +       + +   ++ PT+ ++  N R+RSA+L
Sbjct: 242 SLEDRLVKRFIQKESRDHLPREIPILAKDIKHRLKPLGS-LIRPTEAEIKKNPRARSARL 300

Query: 312 RAGMR 316
           R   +
Sbjct: 301 RIVEK 305


>gi|126663227|ref|ZP_01734225.1| S-adenosyl-methyltransferase MraW [Flavobacteria bacterium BAL38]
 gi|126624885|gb|EAZ95575.1| S-adenosyl-methyltransferase MraW [Flavobacteria bacterium BAL38]
          Length = 298

 Score =  353 bits (906), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 113/305 (37%), Positives = 172/305 (56%), Gaps = 17/305 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQE 76
           H PVLL++ +  LN  P  V +D TFG GG+SR           + A D+D  A+     
Sbjct: 4   HNPVLLKETVDGLNIRPDGVYVDVTFGGGGHSREIMSRLGENGKLFAFDQDLDALKNAI- 62

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
               Y E+F+L    F  ++ ++   G   VDG++ DLGVSS Q D  +RGFS +    L
Sbjct: 63  ----YDERFTLINENFRFIKRFLRFHGIKQVDGILADLGVSSHQFDVAERGFSTRFDAEL 118

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  G ISA  VVN+ + ++++R+L   GE K A  +A+ IV  R+    + +  L 
Sbjct: 119 DMRMNQKGDISAYHVVNEYDEQEISRVLFNYGELKNARAMANVIVTARKDKEIRNSDQLK 178

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            ++ K +   K N+I    + +QA+RI VN E+E L + L  + + LK GG L V+S+HS
Sbjct: 179 QVLAKFLPGHKANKI--LAQIYQAIRIEVNQEMEVLKEFLEQSLEILKPGGRLSVISYHS 236

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDRLVK+F  +   +    R    +   P  F++I +K++VP++E++A N R+RSAKLR
Sbjct: 237 LEDRLVKRFVKNGMFEGEPERDFFGNFEVP--FKTI-EKLIVPSEEEIAINNRARSAKLR 293

Query: 313 AGMRT 317
              + 
Sbjct: 294 VAEKI 298


>gi|163841237|ref|YP_001625642.1| S-adenosyl-methyltransferase MraW [Renibacterium salmoninarum ATCC
           33209]
 gi|162954713|gb|ABY24228.1| S-adenosyl-methyltransferase [Renibacterium salmoninarum ATCC
           33209]
          Length = 382

 Score =  353 bits (906), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 120/326 (36%), Positives = 183/326 (56%), Gaps = 15/326 (4%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNPAPGK--------VILDATFGAGGYSRSFCKMGS-- 59
           ++        HVPVL ++ + LL PA           V++DAT G GG+S +        
Sbjct: 54  TTPPPADAPRHVPVLRDRCVNLLAPAIEAANLAGRRAVVVDATLGMGGHSEAMLTRFENL 113

Query: 60  NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSM 116
           ++I +DRD  A+      ++ ++++  L  A + ++ + + D G   +DGV+ DLGVSS+
Sbjct: 114 HLIGIDRDTQALDLSGARLKPFEDRTDLVHAVYDEITEVLDDLGFESIDGVLMDLGVSSL 173

Query: 117 QIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175
           Q+D  +RGF++    PLDMRM  S G SA+DVVN  +  +L  I+   GEEK A RIA+ 
Sbjct: 174 QLDEAERGFAYSYDAPLDMRMDTSRGQSAADVVNSYSETELVSIIRRWGEEKFAGRIANR 233

Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRS 234
           IV  R   PF  T +L  +I+K V  +      HPA R+FQALRI VN E+  L + + +
Sbjct: 234 IVAARAEKPFAGTGELVEVIRKAVPAAAARTGGHPAKRTFQALRIEVNEELVVLERAVPA 293

Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVV 294
           A  AL  GG  +V+S+HSLED++VKKFF++           +  ++     +++TK   V
Sbjct: 294 AVDALAIGGRAVVMSYHSLEDKIVKKFFSTGVTSSAPPGFPVELDSQKPELKTLTKGTEV 353

Query: 295 PTQEDVAFNRRSRSAKLRAGMRTVER 320
           PT+ ++A N R+ SA+LRA  R   R
Sbjct: 354 PTEAEIAENPRAASARLRAVERIRPR 379


>gi|145637120|ref|ZP_01792783.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae PittHH]
 gi|145269774|gb|EDK09714.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae PittHH]
          Length = 321

 Score =  353 bits (906), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 122/325 (37%), Positives = 174/325 (53%), Gaps = 20/325 (6%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M+S    +  +H+ VLL + +  L      + +D TFG GG+SR           +IA+D
Sbjct: 1   MNSENSFSSSEHITVLLHEAVNGLALKENGIYIDGTFGRGGHSRFILSQLSSNGRLIAVD 60

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCG 121
           RDP A++   +       +F +   +FS + +          +DG++ DLGVSS Q+D  
Sbjct: 61  RDPRAIAEAHKI---QDSRFQIEHNSFSHIPEICDKLNLVGKIDGILLDLGVSSPQLDEA 117

Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF K GPLDMRM  + G+SA + + Q +++DLT +L   GEE+ A RIA AIV   
Sbjct: 118 ERGFSFMKDGPLDMRMDTTQGLSAEEWLKQVSIEDLTWVLKTFGEERFAKRIATAIVDFN 177

Query: 181 QSAP------FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234
           +SA          T  L+ LI + V F K+   HPATRSFQA+RIF+N+E++EL   L S
Sbjct: 178 KSAVKNSTEFLSRTSQLAELISQAVPF-KDKYKHPATRSFQAIRIFINSELDELESLLNS 236

Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS--ITKKV 292
           A   L   G L ++SFHSLEDR+VK F   +S      + +          Q   I  K 
Sbjct: 237 ALDMLAPEGRLSIISFHSLEDRMVKHFMKKQSKGEDIPKGLPLREDQIQRNQKLRIIGKA 296

Query: 293 VVPTQEDVAFNRRSRSAKLRAGMRT 317
           + P+  ++  N RSRSA LR   R 
Sbjct: 297 IQPSDAEIQANPRSRSAILRVAERI 321


>gi|30248986|ref|NP_841056.1| methyltransferase family protein [Nitrosomonas europaea ATCC 19718]
 gi|42559461|sp|Q82VT1|RSMH_NITEU RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|30138603|emb|CAD84894.1| Methyltransferase family [Nitrosomonas europaea ATCC 19718]
          Length = 317

 Score =  353 bits (906), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 117/312 (37%), Positives = 172/312 (55%), Gaps = 18/312 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            HVPVLLE+    LN     + +DATFG GG+SR           +IA D+DP A+S  +
Sbjct: 1   MHVPVLLEEAADALNIRADGIYVDATFGRGGHSRLILSRLGESGRLIAFDKDPAAISAAR 60

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  E+F     +++Q++  +    V   DG++ DLGVSS+Q+D   RGFSF+  GP
Sbjct: 61  SIR---DERFQAVHGSYAQIRTALESLSVSRIDGILLDLGVSSIQLDEASRGFSFRHDGP 117

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G +A++ +      +L  ++   GEE+ A +IA AIV  +   P  TT  L
Sbjct: 118 LDMRMDSSRGKTAAEWLATVTETELKEVIRTYGEERYAGQIAGAIVMAQTRQPIVTTFQL 177

Query: 192 SSLIQKTVYF--SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           + ++   V     ++ R HPATR+FQA+RI +N E+EEL+  L    + L A G L+V+S
Sbjct: 178 AEIVAAVVRKFGHRDGRQHPATRTFQAIRIHLNQELEELSVTLPQCVELLNANGRLVVIS 237

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNR 304
           FHSLEDR+VK+F   ++G     R +   +           Q I KK + P + +VA N 
Sbjct: 238 FHSLEDRIVKRFMRMQAGTDTLPRKLPVRDEESRMHSRQTLQIIGKK-IRPGENEVAANP 296

Query: 305 RSRSAKLRAGMR 316
           R+RSA +R   +
Sbjct: 297 RARSAVMRVAEK 308


>gi|238754428|ref|ZP_04615783.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia
           ruckeri ATCC 29473]
 gi|238707257|gb|EEP99619.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Yersinia
           ruckeri ATCC 29473]
          Length = 304

 Score =  353 bits (906), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 118/305 (38%), Positives = 172/305 (56%), Gaps = 15/305 (4%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRD 80
           LL++ +  LN     + +D TFG GG+SR           +IA+DRDP A+   +     
Sbjct: 2   LLDEAVNGLNIRSNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDRDPQAIEAAKSI--- 58

Query: 81  YKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
              +FS+    FS+L  YV +      +DGV+ DLGVSS Q+D  +RGFSF + GPLDMR
Sbjct: 59  TDPRFSIVHGPFSELAHYVRELDLVGKIDGVLLDLGVSSPQLDDPERGFSFMRDGPLDMR 118

Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M  S GISA++ + +A   D+  +L   GEE+ A R+A AIV+R  + P   T +L++LI
Sbjct: 119 MDPSRGISAAEWLMKAGADDIAWVLKTFGEERFAKRLARAIVERNLTQPMTRTTELANLI 178

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
                F + ++ HPATRSFQA+RI++N+E+EE+ + L  A + L   G L V+SFHSLED
Sbjct: 179 ANASPFREKHK-HPATRSFQAIRIYINSELEEIERALEGALEVLAPAGRLSVISFHSLED 237

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV---VPTQEDVAFNRRSRSAKLR 312
           R+VK F  ++S        +  +            K V   +P+  +VA N R+RS+ LR
Sbjct: 238 RIVKNFIRNQSRGPKVPAGLPLTEEQLQSLGGRNLKAVGKMMPSDAEVAENPRARSSVLR 297

Query: 313 AGMRT 317
              R 
Sbjct: 298 FAERI 302


>gi|320334677|ref|YP_004171388.1| ribosomal RNA small subunit methyltransferase H [Deinococcus
           maricopensis DSM 21211]
 gi|319755966|gb|ADV67723.1| Ribosomal RNA small subunit methyltransferase H [Deinococcus
           maricopensis DSM 21211]
          Length = 295

 Score =  353 bits (906), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 115/310 (37%), Positives = 163/310 (52%), Gaps = 23/310 (7%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSC 73
             +   H+PVL  +V+  L P PG+V +D T G  G++R     G+ V  +D+DP+A+  
Sbjct: 3   DQSPLTHIPVLATEVLDALQPQPGQVFVDGTLGGAGHTRLLLAAGATVYGIDQDPYALER 62

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKS 130
            +           + +  F  ++  + D GVD   GV+ D+GVSS Q+D   RGFS+   
Sbjct: 63  NR---AAGLNGLHVLEGNFRDMRALLNDAGVDHVDGVLLDIGVSSFQLDDAARGFSYHTE 119

Query: 131 GPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            PLDMRMS  G SA+D+VN     DL  I+   GEE+ + RIA  IV  R   P  TT  
Sbjct: 120 APLDMRMSQGGDSAADLVNDMEEADLAAIIFEYGEERHSRRIARGIVNARDKGPISTTTQ 179

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ +I++         IHPA R+FQALRI VN+E+  L  GL+ A   L+ GG L V+SF
Sbjct: 180 LADIIKRAYPGGHARGIHPARRTFQALRIAVNDELGALRDGLQGASDLLRPGGRLAVISF 239

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDR+VK+F                          +TK+ +   +++ A N R+RSAK
Sbjct: 240 HSLEDRIVKRFL-----------------LADPTLDPLTKRPIEAAEDEQARNPRARSAK 282

Query: 311 LRAGMRTVER 320
           LR   +  E 
Sbjct: 283 LRGARKRAEE 292


>gi|302561117|ref|ZP_07313459.1| methylase MraW [Streptomyces griseoflavus Tu4000]
 gi|302478735|gb|EFL41828.1| methylase MraW [Streptomyces griseoflavus Tu4000]
          Length = 318

 Score =  353 bits (906), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 124/310 (40%), Positives = 184/310 (59%), Gaps = 10/310 (3%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           HVPV+L++ + LL PA   PG V++D T G GG+S +  +      ++ALDRD  A+   
Sbjct: 6   HVPVMLQRCLDLLAPALEGPGAVVVDCTLGLGGHSEALLRRFPEARLVALDRDKEALRLS 65

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            E +  + E+ +L  A + +L D +   G+    GV+FDLGVSSMQ+D   RGF++ +  
Sbjct: 66  GERLAPFGERATLVHAVYDELPDVLGRLGIARAQGVLFDLGVSSMQLDEAGRGFAYAQDA 125

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + G+SA++V+N     +L RIL   GEEKQA RI  AIV+ R+  PF  +  
Sbjct: 126 PLDMRMDQTTGVSAAEVLNTYPPGELVRILRAYGEEKQAKRIVSAIVREREKEPFTNSAR 185

Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  LI+  +   +K    +PA R+FQALRI VN E+  L + + +A KAL  GG + V+S
Sbjct: 186 LVELIRDALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVKALGVGGRIAVLS 245

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           +HSLEDRLVK+ FA+ +         +    +    + +T+   +PT+E++A NRR+  A
Sbjct: 246 YHSLEDRLVKQVFAAGAATTAPPGLPVVPEQYQPRLKLLTRGAELPTEEEIAENRRAAPA 305

Query: 310 KLRAGMRTVE 319
           +LR   R  E
Sbjct: 306 RLRGAERIRE 315


>gi|296106496|ref|YP_003618196.1| S-adenosylmethyl transferase MraW [Legionella pneumophila 2300/99
           Alcoy]
 gi|295648397|gb|ADG24244.1| S-adenosylmethyl transferase MraW [Legionella pneumophila 2300/99
           Alcoy]
          Length = 308

 Score =  353 bits (906), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 115/311 (36%), Positives = 167/311 (53%), Gaps = 12/311 (3%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H  VLL + I  L      +  D TFG GG+SR           + A+D+D  AV  
Sbjct: 1   MAKHQSVLLHESIKGLAIKADGIYFDGTFGRGGHSREILNHLSDKGRLFAIDKDLDAVQY 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGV----DGVVFDLGVSSMQIDCGDRGFSFQK 129
            ++      ++F +F  +F+Q++++    GV    DG++ DLGVSS Q+D  +RGFSF  
Sbjct: 61  AKDYF-GLDKRFQIFHGSFAQIKEFASQAGVIGAVDGILLDLGVSSPQLDNPERGFSFML 119

Query: 130 SGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM     I+A++ VN+A V +L  +    GEE+ A RIA AIV  R+  P  TT
Sbjct: 120 QGPLDMRMDLTQSINAANFVNEAEVNELAHVFRAYGEERFAGRIAKAIVDARKLKPITTT 179

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ ++++     + ++ HPATR FQA+RI VN E+ +L+  L      L   G L V+
Sbjct: 180 LELAEIVKEANPKWEKHK-HPATRVFQAIRIHVNQELTDLSNCLEECLDVLGPRGRLAVI 238

Query: 249 SFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           SFHSLEDR+VK+F   +  G    V   I        F+ +  K V P   ++  N RSR
Sbjct: 239 SFHSLEDRIVKQFMRDKEQGNRPPVEVPIKYEELKTNFKRV-GKAVKPQSSEIKENVRSR 297

Query: 308 SAKLRAGMRTV 318
           SA LR G +  
Sbjct: 298 SAVLRIGEKLA 308


>gi|145633140|ref|ZP_01788872.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae 3655]
 gi|144986366|gb|EDJ92945.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae 3655]
          Length = 321

 Score =  353 bits (906), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 122/325 (37%), Positives = 173/325 (53%), Gaps = 20/325 (6%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M+S    +  +H+ VLL + +  L      + +D TFG GG+SR           +IA+D
Sbjct: 1   MNSENSFSSSEHITVLLHEAVNGLALKENGIYIDGTFGRGGHSRFILSQLSSNGRLIAVD 60

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCG 121
           RDP A+    +       +F +   +FS + +          +DG++ DLGVSS Q+D  
Sbjct: 61  RDPRAIVEAHKI---QDSRFQIEHNSFSHIPEICDKLNLVGKIDGILLDLGVSSPQLDEA 117

Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF K GPLDMRM  + G+SA + + Q +++DLT +L   GEE+ A RIA AIV   
Sbjct: 118 ERGFSFMKDGPLDMRMDTTQGLSAEEWLKQVSIEDLTWVLKTFGEERFAKRIATAIVDFN 177

Query: 181 QSAP------FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234
           +SA          T  L+ LI + V F K+   HPATRSFQA+RIF+N+E++EL   L S
Sbjct: 178 KSAVKNSTEFLSRTSQLAELISQAVPF-KDKHKHPATRSFQAIRIFINSELDELESLLNS 236

Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS--ITKKV 292
           A   L   G L ++SFHSLEDR+VK F   +S      + +          Q   I  K 
Sbjct: 237 ALDMLAPEGRLSIISFHSLEDRMVKHFMKKQSKGEDIPKGLPLREDQIQRNQKLRIIGKA 296

Query: 293 VVPTQEDVAFNRRSRSAKLRAGMRT 317
           + P+  ++  N RSRSA LR   R 
Sbjct: 297 IQPSDAEIQANPRSRSAILRVAERI 321


>gi|163732141|ref|ZP_02139587.1| S-adenosyl-methyltransferase, putative [Roseobacter litoralis Och
           149]
 gi|161394439|gb|EDQ18762.1| S-adenosyl-methyltransferase, putative [Roseobacter litoralis Och
           149]
          Length = 330

 Score =  352 bits (905), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 142/316 (44%), Positives = 190/316 (60%), Gaps = 6/316 (1%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQET 77
            H+PVLL  ++  + P  G   LD TFGAGGY+R   + G+  VIA+DRDP A     + 
Sbjct: 12  PHIPVLLSAILDAVAPVHGD-WLDGTFGAGGYTRGLLEAGADRVIAVDRDPLAFEMAADW 70

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
              Y  +       FS++  Y     +DGVV DLGVSSMQ+D  +RGFSF + GPLDMRM
Sbjct: 71  ADAYGARLVQQLGVFSKMDTYAD--ALDGVVLDLGVSSMQLDLAERGFSFMRDGPLDMRM 128

Query: 138 SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK 197
           S  G SA+D+VN+A+ + +  IL   GEE+ + RIA AI+  R  AP  TT  L+ +I++
Sbjct: 129 SQEGPSAADIVNEASAETIANILFQYGEERASRRIAKAILTERAIAPITTTLHLAGIIER 188

Query: 198 TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRL 257
            +  SK  + H ATRSFQALRI VN+E  EL QGL +AE+ALK GG L VV+FHS+EDR+
Sbjct: 189 CLPRSKPGQSHAATRSFQALRIAVNDEYGELYQGLMAAERALKPGGQLAVVTFHSVEDRM 248

Query: 258 VKKFFASRSGKVMAVRHMIPS-NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           VK+F  +R+G         P        F   ++K +V    +VA N R+RSAKLR  +R
Sbjct: 249 VKRFLTARAGAGGNANRFAPEVQRDAPAFTLRSRKAIVADYAEVAANPRARSAKLRIAVR 308

Query: 317 TVERSIE-DDSFVHLP 331
           T   + E D   V +P
Sbjct: 309 TDAPAGEIDAKSVGMP 324


>gi|66769818|ref|YP_244580.1| S-adenosyl-methyltransferase MraW [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|81304228|sp|Q4UQW3|RSMH_XANC8 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|66575150|gb|AAY50560.1| cell division protein [Xanthomonas campestris pv. campestris str.
           8004]
          Length = 342

 Score =  352 bits (905), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 125/331 (37%), Positives = 177/331 (53%), Gaps = 11/331 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69
           +      HVPVL  +V+  L        LD TFG GG++R   +    G  ++ +D+DP 
Sbjct: 1   MSQPPAAHVPVLYTQVLEGLQVTENGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDPE 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
           AV+  Q T      + S+   +F++L   V    VDG++ DLGVSS Q+D   RGFSF K
Sbjct: 61  AVAVSQHTFGG-DARVSIHPGSFARLVQVVAAATVDGILLDLGVSSPQLDVAGRGFSFGK 119

Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM   SG SA+  + QA  +++  +L   GEE+Q+ RIA AIV RR   P   T
Sbjct: 120 DGPLDMRMDPDSGQSAAGWLAQATDREIADVLWTYGEERQSRRIARAIVARRGEQPLLRT 179

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ LI   +    +++ HPATRSFQA+RI +N E+ +L  GL +A  ALK GG L V+
Sbjct: 180 AQLADLIASVMPRG-DSKTHPATRSFQAIRIHINRELADLEAGLDAALGALKPGGRLAVI 238

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDR+VK+F A  +    + R +  +       Q ++   +     ++A N R+RS
Sbjct: 239 SFHSLEDRIVKQFMARYAKAPPSNRRLPEAQPFVPTLQLVS-GAIKADDSELAVNPRARS 297

Query: 309 AKLRAGMR----TVERSIEDDSFVHLPRLPT 335
           A LR   +      E  +         R PT
Sbjct: 298 AVLRVAEKLGMENRESGMGKGHGAAASRFPT 328


>gi|126726611|ref|ZP_01742451.1| S-adenosyl-methyltransferase MraW [Rhodobacterales bacterium
           HTCC2150]
 gi|126703940|gb|EBA03033.1| S-adenosyl-methyltransferase MraW [Rhodobacterales bacterium
           HTCC2150]
          Length = 317

 Score =  352 bits (905), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 138/318 (43%), Positives = 183/318 (57%), Gaps = 9/318 (2%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQE 76
             HVPVLL  +IA   P      LD TFGAGGY+R+    G++ VIA+D+DP      + 
Sbjct: 4   APHVPVLLRPIIAKTAPIS-GTWLDGTFGAGGYTRALLDAGADTVIAVDQDPLVFDMAKS 62

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
              +Y  +     + F+ L      + +DG+V DLGVSSMQID  +RGFSF + GPLDMR
Sbjct: 63  WADEYGARLVPVASNFADLDK--AGQNLDGIVLDLGVSSMQIDQAERGFSFMQDGPLDMR 120

Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
           MS SG +A+D+VN A   +L  IL   GEE+ + RIA AI+  R   P  TT +L + I 
Sbjct: 121 MSQSGPTAADLVNTATEAELADILFQYGEERASRRIAKAIIAAR---PLNTTAELVAAIT 177

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
           +     K  + HPATRSFQALRI VN+E+  L +GL +AE+AL   G L VV+FHSLEDR
Sbjct: 178 EVAPVKK-GQSHPATRSFQALRIAVNDELGALIRGLEAAERALAPNGWLAVVTFHSLEDR 236

Query: 257 LVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           +VK+F  SRS      R+     +    F+   +K +    E+VA N R+RSA LR   R
Sbjct: 237 IVKRFLQSRSAISQGSRYAPEQKSAAPTFELQGRKAIKADDEEVAANPRARSASLRLAKR 296

Query: 317 TVERSIEDD-SFVHLPRL 333
           T   +   D   + LP L
Sbjct: 297 TTAAARPSDWGKLGLPGL 314


>gi|159027563|emb|CAO86934.1| MraW [Microcystis aeruginosa PCC 7806]
          Length = 293

 Score =  352 bits (905), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 117/304 (38%), Positives = 176/304 (57%), Gaps = 27/304 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQET 77
           H+ VL +++IA LN  PG   LD T G GG+SR   +      V A+DRD  A+   + +
Sbjct: 7   HISVLSQELIAGLNIQPGGHYLDLTLGGGGHSRLLLEAHPETKVTAIDRDQSALEAAKIS 66

Query: 78  MRDY-KEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
           +  Y   + +L+   F+  +    +   DG++ DLGVSS Q D  +RGFSF+ +  LDMR
Sbjct: 67  LAPYLDSRLTLWWGNFADYKG--QNSSFDGIIADLGVSSPQFDQSERGFSFRHTAALDMR 124

Query: 137 MS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M  C  ++A+D++N    K+L  +    GEE+ +  IA +IV++R   PF TT +L+++I
Sbjct: 125 MDRCQSLTAADIINHWQEKELADLFYQYGEERLSRPIARSIVQKR---PFTTTTELAAVI 181

Query: 196 QKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
             +V  S +  RIHPATR FQ+LRI VN E++ L + L  A + LK+GG++ ++SFHSLE
Sbjct: 182 ASSVPASYRYGRIHPATRVFQSLRIAVNQELDSLQKLLNQAPQWLKSGGIIAMISFHSLE 241

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           DRL+K  F   +                   + ITKK ++P++E+ A N RSRSAKLR  
Sbjct: 242 DRLIKYGFREDNS-----------------LKIITKKPIIPSREEQAKNPRSRSAKLRIA 284

Query: 315 MRTV 318
            +  
Sbjct: 285 QKIE 288


>gi|194364373|ref|YP_002026983.1| S-adenosyl-methyltransferase MraW [Stenotrophomonas maltophilia
           R551-3]
 gi|262826731|sp|B4SJW8|RSMH_STRM5 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|194347177|gb|ACF50300.1| S-adenosyl-methyltransferase MraW [Stenotrophomonas maltophilia
           R551-3]
          Length = 322

 Score =  352 bits (905), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 120/310 (38%), Positives = 179/310 (57%), Gaps = 8/310 (2%)

Query: 12  AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDP 68
            +  +   H+PVL  +V+  L        LD TFG GG++R           ++ +D+DP
Sbjct: 11  PVSQSPAVHLPVLYTQVLEGLRVIENGRYLDGTFGRGGHARGVLTQLGPEGRLLVMDKDP 70

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDY-VPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
            A++  +        + S+F+ +F+QL  +    +G+DGV+FDLGVSS Q+D  +RGFSF
Sbjct: 71  EAIAVAERDFAP-DPRVSIFRGSFAQLLQWDATAEGLDGVLFDLGVSSPQLDVAERGFSF 129

Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
            K GPLDMRM   SG SA+  +N+   +++  +L   GEE+Q+ RIA AIV RR+  PF 
Sbjct: 130 GKDGPLDMRMDPDSGESAAQWINRVEDREIADVLWTYGEERQSRRIARAIVARREKQPFS 189

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
            T +L+ LI   +   K ++IHPATRSFQA+RI +N E+ +L  GL +A + LK GG L 
Sbjct: 190 RTAELAELIASVMPRGK-DKIHPATRSFQAIRIHINRELADLEAGLDAAVERLKPGGRLA 248

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           ++SFHSLEDR+VK++    +    A R +  +         I    +  T E++A N R+
Sbjct: 249 IISFHSLEDRIVKQYMNRLAKAPPANRRLPEAEVFVPTLDLI-GGAIKATDEELAANPRA 307

Query: 307 RSAKLRAGMR 316
           RSA LR   +
Sbjct: 308 RSAVLRVAQK 317


>gi|325280032|ref|YP_004252574.1| Ribosomal RNA small subunit methyltransferase H [Odoribacter
           splanchnicus DSM 20712]
 gi|324311841|gb|ADY32394.1| Ribosomal RNA small subunit methyltransferase H [Odoribacter
           splanchnicus DSM 20712]
          Length = 302

 Score =  352 bits (905), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 103/304 (33%), Positives = 168/304 (55%), Gaps = 15/304 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           HVPVLL++ +  L+   G V LD TFG GG+S    K       ++  D+D  A++   E
Sbjct: 5   HVPVLLKESVDGLDIRQGGVYLDLTFGGGGHSGEILKRLDAEGCLLGFDQDEDALANVPE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                 ++F      F  L++++   G    DG++ DLGVSS + D   RGFSF+    L
Sbjct: 65  -----DDRFIFVNHNFRYLRNFMRYYGYEEADGILADLGVSSHEFDEAGRGFSFRFEAEL 119

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  S ++A+ V+N  + + LT I    GE + A R+   IVK R +   +T++   
Sbjct: 120 DMRMNQRSKLTAATVLNTYDAEQLTAIFRNYGEVENARRLVDLIVKARANQEIKTSEAFY 179

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I   +   K        + +QALRI VN E+E L + ++ A + LK GG L+++++HS
Sbjct: 180 QIILPCIP--KLKEKKYLAKVYQALRIEVNGELEALEEMMQQAMEVLKPGGRLVIITYHS 237

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK F  + + +    + ++  + H   F+ + +KV+VP++E++  N R+RSAKLR
Sbjct: 238 LEDRIVKNFLKAGNAEGKLEKDLVFGHVHHN-FELVNRKVIVPSEEEIVRNPRARSAKLR 296

Query: 313 AGMR 316
              +
Sbjct: 297 IARK 300


>gi|209963954|ref|YP_002296869.1| S-adenosyl-methyltransferase MraW [Rhodospirillum centenum SW]
 gi|262825439|sp|B6IRH0|RSMH_RHOCS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|209957420|gb|ACI98056.1| S-adenosyl-methyltransferase MraW [Rhodospirillum centenum SW]
          Length = 329

 Score =  352 bits (905), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 132/309 (42%), Positives = 189/309 (61%), Gaps = 7/309 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSNVIALDRDPFAVSCGQETM 78
           H+PVL ++V+  L P  G V++D TFGAGGY+ +        V A+DRDP AV+ G    
Sbjct: 16  HIPVLRDEVVDALAPRDGAVLVDGTFGAGGYTAALLASAACTVWAIDRDPAAVARGHALA 75

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
             +  + ++   TF  ++  +   G   VDG+  D+GVSS QID   RGFSF+  GPLDM
Sbjct: 76  ARHPGRLTVLDGTFGCMESLLAAHGITRVDGIALDIGVSSPQIDDPSRGFSFRFDGPLDM 135

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RM   G +A+D+VN+ +  ++  I+   GEE+ + R+A AIV RR+ AP   T DL+ ++
Sbjct: 136 RMGSHGTTAADIVNERDEAEIADIVWRYGEERHSRRVARAIVARRREAPITRTLDLAEIV 195

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           +  V  SK+  I PATR+FQALRI VN+E+ EL +GL +AE+ L  GG L VV+FHSLED
Sbjct: 196 RSVVPKSKDG-IDPATRTFQALRIAVNDELGELERGLAAAERLLAPGGRLAVVTFHSLED 254

Query: 256 RLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           R+VK+F  SRS    A    +  P++A    F+ I +  V P   ++A N R+RSA+LR+
Sbjct: 255 RVVKEFLRSRSAAAPAPSRHLPAPADAPAPTFRLIARSGVTPAPAELAANPRARSARLRS 314

Query: 314 GMRTVERSI 322
             RT   + 
Sbjct: 315 AERTSAPAR 323


>gi|212702349|ref|ZP_03310477.1| hypothetical protein DESPIG_00362 [Desulfovibrio piger ATCC 29098]
 gi|212674227|gb|EEB34710.1| hypothetical protein DESPIG_00362 [Desulfovibrio piger ATCC 29098]
          Length = 334

 Score =  352 bits (905), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 119/317 (37%), Positives = 173/317 (54%), Gaps = 18/317 (5%)

Query: 20  HVPVLLEKVIALLNP-------APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFA 70
           H+PVL+++ +A L P        P ++ LD T G  G+S +  +      + ALDRD  A
Sbjct: 16  HIPVLMKETLAALQPVLDAGRDRPVRI-LDGTLGMAGHSCAMLQAAPMAELCALDRDEEA 74

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSF 127
           +   +  +  + ++   +   +SQ ++ + D G   VD V+ D+GVSS+Q+D  +RGFSF
Sbjct: 75  LELARRRLEPFGDRVHTYHCRYSQFEEALDDLGWEKVDAVLLDIGVSSLQLDEAERGFSF 134

Query: 128 QKSGPLDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
              GPLDMRM       SA   VN+ N   L   +  LGEE QA RIA AIV  RQ +P 
Sbjct: 135 YGDGPLDMRMDQHSGAPSAWHWVNRENFDRLKECIATLGEEPQAGRIARAIVDARQKSPI 194

Query: 186 QTTQDLSSLIQKTVYFSKNNR--IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
            TT  L++L++K    +   +   HPATR+FQALR+ VN+E+ EL + L +    L  GG
Sbjct: 195 DTTAQLAALVEKAYPPAWRAKARRHPATRTFQALRMAVNDELGELRRFLDAILGRLSLGG 254

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAF 302
            L V+SFHSLEDR+VK+     +      RH  +    H    + + KK V    +++A 
Sbjct: 255 RLSVISFHSLEDRMVKQTMRYWAEGCRCPRHVPVCVCHHVPEVEILYKKPVQADDDELAV 314

Query: 303 NRRSRSAKLRAGMRTVE 319
           N R+ SAKLRA  +  E
Sbjct: 315 NPRASSAKLRAVEKIAE 331


>gi|260910904|ref|ZP_05917546.1| S-adenosyl-methyltransferase MraW [Prevotella sp. oral taxon 472
           str. F0295]
 gi|260634961|gb|EEX53009.1| S-adenosyl-methyltransferase MraW [Prevotella sp. oral taxon 472
           str. F0295]
          Length = 319

 Score =  352 bits (904), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 109/321 (33%), Positives = 172/321 (53%), Gaps = 17/321 (5%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALD 65
           ++  I    G HVPVLL + +  LN   G V +D TFG GG++          + + + D
Sbjct: 2   INDNITTAQGYHVPVLLAESVDALNIFKGGVYVDVTFGGGGHTCHILSKMDATARLFSFD 61

Query: 66  RDPFAVSCGQETMRDY------KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSM 116
           +D  A    +    +         +F+  ++ F  L +++   GV   DG++ DLGVSS 
Sbjct: 62  QDADAEENTRREGSEGQSPLANDNRFTFVRSNFRYLDNWMRYYGVEHVDGILADLGVSSH 121

Query: 117 QIDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175
             D  +RGFSF+   PLDMRM+ +  ++A+ V+N  + + L  +  + GE +Q+ RIA A
Sbjct: 122 HFDDQERGFSFRFDAPLDMRMNKNATLTAAQVLNTYDEEKLADVFFLYGEIRQSRRIASA 181

Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           IVK R  A   TTQ+ +++++   +F          + FQALRI VNNE++ L + L++A
Sbjct: 182 IVKARAKAAVHTTQEFAAIVEP--FFKLEREKKEMAKLFQALRIEVNNEMDALKEMLQAA 239

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295
            + L  GG L V+++HSLEDR+VK F  + + +    +        P  F  +  KV+VP
Sbjct: 240 SEWLGKGGRLSVITYHSLEDRMVKNFMKTGNVEGKLSQDFFGRAQTP--FTLVNNKVIVP 297

Query: 296 TQEDVAFNRRSRSAKLRAGMR 316
           T ++   N RSRSAKLR   +
Sbjct: 298 TADEQLRNPRSRSAKLRIAEK 318


>gi|218961102|ref|YP_001740877.1| S-adenosyl-methyltransferase MraW [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729759|emb|CAO80671.1| S-adenosyl-methyltransferase MraW [Candidatus Cloacamonas
           acidaminovorans]
          Length = 327

 Score =  352 bits (904), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 120/311 (38%), Positives = 175/311 (56%), Gaps = 10/311 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQET 77
           H PV++++ ++ LN   G + +DAT G GG+S +  K      +   D+D  A+    + 
Sbjct: 4   HTPVMVKECLSYLNLRAGYIYVDATTGGGGHSLAMLKAQPEIKLYCFDQDSEAIEEAGKI 63

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           + +Y     L QA F QL+  +  +   G+DG++FDLGVSS Q++C +RGFSF+K  PLD
Sbjct: 64  LHNY-NNVELIQANFKQLRTELAYRKIKGIDGILFDLGVSSHQLECTERGFSFEKDAPLD 122

Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM  +   SA + VN+ + K LT I    GEE+ A RIA AI K   S P +TT++L+ 
Sbjct: 123 MRMDKNLKNSAYNAVNELDTKTLTNIFREYGEEQNAYRIAKAIEK--SSKPIKTTRELAK 180

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           +++          +    R FQALRI+VN E+E L+  L+ A   L   G ++V+S+HSL
Sbjct: 181 IVESIAGKGTKASLKTKVRVFQALRIYVNKELESLSLALQDAINLLNPQGRIVVISYHSL 240

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSN-AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           EDR+VK+ F     K      +  SN  H      +TKK V  T+E++  N RSRSAKLR
Sbjct: 241 EDRIVKQTFKKAEQKNEEQSVLPNSNKNHQQQLIILTKKPVTATEEEILVNPRSRSAKLR 300

Query: 313 AGMRTVERSIE 323
           AG +      E
Sbjct: 301 AGEKVQREKRE 311


>gi|77919804|ref|YP_357619.1| S-adenosylmethionine-dependent methyltransferase [Pelobacter
           carbinolicus DSM 2380]
 gi|88909207|sp|Q3A2F8|RSMH_PELCD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|77545887|gb|ABA89449.1| predicted S-adenosylmethionine-dependent methyltransferase
           [Pelobacter carbinolicus DSM 2380]
          Length = 314

 Score =  352 bits (904), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 123/313 (39%), Positives = 176/313 (56%), Gaps = 9/313 (2%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPF 69
           +   +  H  V+ E+V+  L P PG+V +D T G GG++R   +  +    ++ LDRD  
Sbjct: 1   MTREVFQHSSVMPEEVLECLRPQPGEVFVDGTVGGGGHARLILEATAPDGLLVGLDRDRE 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFS 126
           A+      +  + E+  L    F+     + +     VDG++ DLGVSS Q+D   RGFS
Sbjct: 61  ALEEAGRQLASFGERVLLRHGNFADATRILAELDIATVDGILLDLGVSSFQLDTARRGFS 120

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           FQ   PLDMRM  S G++A+DVVN  + ++L RI    GEE+ A RIA  I K R   P 
Sbjct: 121 FQSDAPLDMRMDTSAGMTAADVVNALSPEELARIFREYGEERYARRIARRIEKVRADEPL 180

Query: 186 QTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
            TT+ L+ L++  V      +RIHPATR FQALRI VN E++ L +GLR +   LK GG 
Sbjct: 181 MTTRQLAELVRDAVPGGHVPSRIHPATRVFQALRIHVNAELDSLREGLRRSLALLKPGGR 240

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
           + V+SFHSLEDR+VK+FF S     +      I +         +T+K +  ++ ++A N
Sbjct: 241 MAVISFHSLEDRIVKQFFRSEVQTCICPPGLPICACNRKPGVALLTRKGLKASESEIAAN 300

Query: 304 RRSRSAKLRAGMR 316
            R+RSA LRA  R
Sbjct: 301 PRARSAVLRAIRR 313


>gi|299768536|ref|YP_003730562.1| S-adenosyl-methyltransferase MraW [Acinetobacter sp. DR1]
 gi|298698624|gb|ADI89189.1| S-adenosyl-methyltransferase MraW [Acinetobacter sp. DR1]
          Length = 307

 Score =  352 bits (904), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 112/310 (36%), Positives = 170/310 (54%), Gaps = 16/310 (5%)

Query: 20  HVPVLLEKVIA-LLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
           H+ VLL + +  LL      V +DATFG GG++R         + V A D+DP A+    
Sbjct: 3   HISVLLFETVESLLADRTTGVYIDATFGRGGHTRLLLSKLDENARVYAFDKDPQALEVA- 61

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +     +F++  A+F+ +++ + + GV   DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 62  AALAQEDPRFTIIHASFADIKEKMQEIGVMSVDGIMADLGVSSPQLDQAERGFSFMQDGP 121

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G++A++ + +   + L  I+   GEE+ + RIA AI          TT  L
Sbjct: 122 LDMRMDNSKGLTAAEWLLEIEEEQLANIIYQYGEERYSRRIAKAIKNA---GKLDTTAQL 178

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + L++      + ++ HPATR+FQA+RI +N E+E++   L  A   LK  G L V+SFH
Sbjct: 179 AELVKTAHPKWEKHK-HPATRTFQAIRIAINKELEDIEVFLPQAVDLLKPEGRLSVISFH 237

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNA-HPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDRL+K+F    S         +P         + I++  V  ++E+V  N RSRSA 
Sbjct: 238 SLEDRLIKQFIQKESTLAEDFGWGMPEQRVDTRRLKKISR--VRASEEEVKANPRSRSAW 295

Query: 311 LRAGMRTVER 320
           LR   R  E+
Sbjct: 296 LRVAERLEEK 305


>gi|330877141|gb|EGH11290.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 313

 Score =  352 bits (904), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 112/307 (36%), Positives = 174/307 (56%), Gaps = 12/307 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H+ VLLE+ +  L        LD TFG GG+SR           ++  D+DP A++ GQ 
Sbjct: 7   HITVLLEEAVEALAVRADGCYLDGTFGRGGHSRLILNHLGPDGRLLGFDKDPQAIATGQA 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            +     +F + Q +F++L     + G    V G++ DLGVSS Q+D  +RGFSF   GP
Sbjct: 67  -LAAEDGRFVIVQRSFAELGSQAQELGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDGP 125

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G+SA++ +  A  +++ R+    GEE+ A R+A+A+V+RR+  PF+ T DL
Sbjct: 126 LDMRMDPTRGVSAAEFIASAPAEEIARVFKEYGEERFAKRMANAVVQRREIQPFERTADL 185

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + +++      +  + +PATR+FQ LRI VNNE+ +L  GL +A ++L+ GG L+V+SFH
Sbjct: 186 AEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAAMESLEIGGRLVVISFH 244

Query: 252 SLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK F    + G+   +   +P        +  I  K    +  +   N RSRSA
Sbjct: 245 SLEDRIVKLFMRKLAKGEADNMPRNLPIQYKAFEPKIKIHGKAQFASDVETKANPRSRSA 304

Query: 310 KLRAGMR 316
            +R   +
Sbjct: 305 VMRVAEK 311


>gi|145639350|ref|ZP_01794956.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae PittII]
 gi|145271653|gb|EDK11564.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae PittII]
 gi|309751224|gb|ADO81208.1| 16S rRNA m(4)C1402 methyltranserfase [Haemophilus influenzae R2866]
          Length = 321

 Score =  352 bits (904), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 121/325 (37%), Positives = 174/325 (53%), Gaps = 20/325 (6%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M+S    +  +H+ VLL + +  L      + +D TFG GG+SR           +IA+D
Sbjct: 1   MNSENSFSSSEHITVLLHEAVNGLALKENGIYIDGTFGRGGHSRFILSQLSSNGRLIAVD 60

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCG 121
           RDP A++   +       +F +   +FS + +          ++G++ DLGVSS Q+D  
Sbjct: 61  RDPRAIAEAHKI---QDSRFQIEHNSFSHIPEICDKLNLVGKINGILLDLGVSSPQLDEA 117

Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF K GPLDMRM  + G+SA + + Q +++DLT +L   GEE+ A RIA AIV   
Sbjct: 118 ERGFSFMKDGPLDMRMDTTQGLSAEEWLKQVSIEDLTWVLKTFGEERFAKRIATAIVDFN 177

Query: 181 QSAP------FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234
           +SA          T  L+ LI + V F K+   HPATRSFQA+RIF+N+E++EL   L S
Sbjct: 178 KSAVKNGTEFLSRTSQLAELISQAVPF-KDKHKHPATRSFQAIRIFINSELDELESLLNS 236

Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS--ITKKV 292
           A   L   G L ++SFHSLEDR+VK F   +S      + +          Q   I  K 
Sbjct: 237 ALDMLAPEGRLSIISFHSLEDRMVKHFMKKQSKGEDIPKGLPLREDQIQRNQKLRIIGKA 296

Query: 293 VVPTQEDVAFNRRSRSAKLRAGMRT 317
           + P+  ++  N RSRSA LR   R 
Sbjct: 297 IQPSDAEIQANPRSRSAILRVAERI 321


>gi|251788242|ref|YP_003002963.1| S-adenosyl-methyltransferase MraW [Dickeya zeae Ech1591]
 gi|263446384|sp|C6CJW6|RSMH_DICZE RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|247536863|gb|ACT05484.1| S-adenosyl-methyltransferase MraW [Dickeya zeae Ech1591]
          Length = 313

 Score =  352 bits (904), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 120/314 (38%), Positives = 174/314 (55%), Gaps = 19/314 (6%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72
               H  VLL++ +  L+     + +D TFG GG+SR           ++A+DRDP AV 
Sbjct: 3   ETFKHTTVLLDEAVNGLSIRSNGIYIDGTFGRGGHSRLILSHLGPEGRLLAIDRDPQAVE 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128
                      +FS+    FS+L +YV  +G    +DG++ DLGVSS Q+D  +RGFSF 
Sbjct: 63  VANTI---DDARFSIIHGPFSELAEYVEARGLTGKIDGILLDLGVSSPQLDDPERGFSFM 119

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           + GPLDMRM  + G SA+D + +A   D+  +L   GEE+ A RIA AIV+R +  P   
Sbjct: 120 RDGPLDMRMDPTRGQSAADWLMKAEADDIAWVLKTFGEERFAKRIARAIVERNRIDPLTR 179

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T+ L+ LI       +  + HPATRSFQA+RI++N+E+EE+ + L  A   L  GG L V
Sbjct: 180 TKALAELIAAASPIREKYK-HPATRSFQAIRIYINSELEEIERALDGALTVLAPGGRLSV 238

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAF 302
           +SFHSLEDR+VK+F    S        +  + A          +S+ K  ++P  ++VA 
Sbjct: 239 ISFHSLEDRIVKRFIRQHSRGPQVPAGLPLTEAQLRSQGGPTLKSVGK--MMPPDDEVAD 296

Query: 303 NRRSRSAKLRAGMR 316
           N R+RS+ LR   R
Sbjct: 297 NPRARSSVLRFAER 310


>gi|332885960|gb|EGK06204.1| ribosomal RNA small subunit methyltransferase H [Dysgonomonas
           mossii DSM 22836]
          Length = 303

 Score =  352 bits (904), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 108/306 (35%), Positives = 164/306 (53%), Gaps = 16/306 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H+PVLL + I  +N  P  + +D TFG GG+SR          ++ A D+D  A+     
Sbjct: 6   HIPVLLHESIDGMNIHPDSICVDVTFGGGGHSREILSRLGDKGHLYAFDQDEDAIKNI-- 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQK-SGP 132
              +   +F+  ++ F  L++++    VDG   ++ DLGVSS   D  DRGFSF+     
Sbjct: 64  ---EPSNKFTFIRSNFRYLKNFIKYHNVDGVDAILADLGVSSHHFDAEDRGFSFRFEDSD 120

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+  G  +A+ ++N    + L  +  + GE KQ+ RIA  IVK R+  P++ T DL
Sbjct: 121 LDMRMNRKGGKTAAQILNTYTEEKLADVFYLYGELKQSRRIASVIVKTRKEKPYKKTSDL 180

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            + +   V            ++FQALRI VN E+E L + L  A   LK GG L V+++H
Sbjct: 181 LATLNSFVGRG-EKEKKILAQAFQALRIEVNEEMEVLKEMLTQALDILKPGGRLSVITYH 239

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+VK FF + + +    +    +   P  F+ I  KV+ P++++   N RSRSAKL
Sbjct: 240 SLEDRIVKNFFKTGNFEGKVEKDFFGNFETP--FKLINNKVITPSKDEEERNPRSRSAKL 297

Query: 312 RAGMRT 317
           R   + 
Sbjct: 298 RVAEKV 303


>gi|116618594|ref|YP_818965.1| SAM-dependent methyltransferase for cell envelope biogenesis
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
 gi|122271206|sp|Q03W30|RSMH_LEUMM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|116097441|gb|ABJ62592.1| SAM-dependent methyltransferase for cell envelope biogenesis
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
          Length = 312

 Score =  352 bits (904), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 110/308 (35%), Positives = 166/308 (53%), Gaps = 10/308 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76
           +HV VLL + IALL+  P    +DAT G GG++    K      + + D+D  A+    E
Sbjct: 4   EHVTVLLHEAIALLDIKPEGTYVDATLGGGGHTGEILKQLTTGTLYSFDQDDTAIQYNAE 63

Query: 77  TMRD--YKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
              D     +  +    F  L   + D GV   DG+V+DLGVSS+Q D G RGFS++   
Sbjct: 64  QYADEIAAGKLVIIHKNFRTLTSALADYGVTAVDGIVYDLGVSSVQFDDGQRGFSYKYDA 123

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM     ++A  +VN+    +L R+L   GE++   +IA  I + R++AP  TT +
Sbjct: 124 ELDMRMDQRQALTAKTIVNEWPFNELMRVLSRYGEDRFPKQIARKIEQHRENAPINTTFE 183

Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I++ +   ++    HPA RSFQA RI VN+E+  L   L  A + L   G + V++
Sbjct: 184 LVDIIKEAIPAPARRKGGHPAKRSFQAFRIAVNDELGALEDSLTQALELLATDGKISVIT 243

Query: 250 FHSLEDRLVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           F SLEDRLVK+ F  +S    +     +      A ++ +T+K + P+ E++A N R+ S
Sbjct: 244 FQSLEDRLVKQMFREKSSAPELPAGLPVLPGQFEADYELLTRKPISPSTEEMAINHRAES 303

Query: 309 AKLRAGMR 316
           AKLR   R
Sbjct: 304 AKLRGIRR 311


>gi|323343877|ref|ZP_08084104.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Prevotella oralis ATCC 33269]
 gi|323095696|gb|EFZ38270.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Prevotella oralis ATCC 33269]
          Length = 304

 Score =  352 bits (904), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 108/304 (35%), Positives = 159/304 (52%), Gaps = 16/304 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H+PVLL++ I  LN  P  V +D TFG GG+SR   +       + + D+D  A      
Sbjct: 9   HIPVLLKESIDGLNIQPEGVYVDVTFGGGGHSREILRRLGKNGRLYSFDQDADAEQNIVA 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +F+  ++ F  L++++    +D   G++ DLGVSS   D   RGFSF+ + PL
Sbjct: 69  -----DSRFTFVRSNFRYLKNWMRYYKIDHIDGLLADLGVSSHHFDDESRGFSFRFNAPL 123

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  +G +A+D+VN+ + + L  +  + GE K + RIA AIVK R +    TT+   
Sbjct: 124 DMRMNKRAGTTAADIVNKYDEETLANVFYLYGELKNSRRIAAAIVKARATYEIGTTRAFI 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
             I+    F +        + FQALRI VN+E+  L + L  A K L  GG L ++++HS
Sbjct: 184 DAIEPL--FKREREKKDMAKLFQALRIEVNHEMRALKEMLEGASKCLGTGGRLSIITYHS 241

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK      +G V    H          F  I  KV+ P+ E+   N RSRSAKLR
Sbjct: 242 LEDRMVKNMMR--TGNVEGKLHQDFYGHIETPFVLINSKVITPSHEEQEQNPRSRSAKLR 299

Query: 313 AGMR 316
              +
Sbjct: 300 IAEK 303


>gi|262280350|ref|ZP_06058134.1| S-adenosylmethionine-dependent methyltransferase [Acinetobacter
           calcoaceticus RUH2202]
 gi|262258128|gb|EEY76862.1| S-adenosylmethionine-dependent methyltransferase [Acinetobacter
           calcoaceticus RUH2202]
          Length = 307

 Score =  352 bits (903), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 112/310 (36%), Positives = 172/310 (55%), Gaps = 16/310 (5%)

Query: 20  HVPVLLEKVIA-LLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
           H+ VLL + I  LL      V +DATFG GG++R         + V A D+DP A+    
Sbjct: 3   HISVLLSETIESLLADRTTGVYIDATFGRGGHTRLLLSKLDENARVYAFDKDPQALEVA- 61

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            T+     +F++  A+F+ +++ + + GV   DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 62  ATLAQEDSRFTIIHASFADIKEKMQEIGVMSVDGIMADLGVSSPQLDQAERGFSFMQDGP 121

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G++A++ + +   + L  ++   GEE+ + RIA AI         +TT  L
Sbjct: 122 LDMRMDNSKGLTAAEWLLKIEEEQLANVIYQYGEERYSRRIAKAIKLA---GKLETTAQL 178

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + +++      + ++ HPATR+FQA+RI +N E+E++   L  A   LK  G L V+SFH
Sbjct: 179 AEVVKTAHPKWEKHK-HPATRAFQAIRIAINKELEDIEVFLPQAVDLLKPEGRLSVISFH 237

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNA-HPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDRL+K+F    S         +P         + I++  V  ++E+V  N RSRSA 
Sbjct: 238 SLEDRLIKQFIQKESTLAEDFGWGMPEQRVDTRRLKKISR--VRASEEEVKANPRSRSAW 295

Query: 311 LRAGMRTVER 320
           LR   R  E+
Sbjct: 296 LRVAERLEEK 305


>gi|303246299|ref|ZP_07332579.1| S-adenosyl-methyltransferase MraW [Desulfovibrio fructosovorans JJ]
 gi|302492362|gb|EFL52234.1| S-adenosyl-methyltransferase MraW [Desulfovibrio fructosovorans JJ]
          Length = 326

 Score =  352 bits (903), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 122/323 (37%), Positives = 175/323 (54%), Gaps = 11/323 (3%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAV 71
             +  H+PVLL++V+  L   PG  ILDAT G GG+ +   +       V+ LDRD  A+
Sbjct: 2   QHVPTHIPVLLKEVVEYLGIRPGMKILDATAGLGGHIKGMLEAAGGQAEVLGLDRDREAL 61

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQ 128
                 +  Y ++  L +  +S+    + + G   VD  + D G+SS+Q+D  +RGF F 
Sbjct: 62  EEAGRRLAAYGDRVRLVRTRYSRFPAALAEAGWEKVDAALVDAGMSSLQLDDPERGFGFL 121

Query: 129 KSGPLDMRMSCS--GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
             GPLDMRM     G SA  +VN A+   L  I+   GE+ QA RIA AIV  R+ A   
Sbjct: 122 TDGPLDMRMGAEDGGESAEGLVNLASFARLREIIRNYGEDPQAGRIARAIVAAREKAAIT 181

Query: 187 TTQDLSSLIQKTVYFSKNN--RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           TT  L+ ++            R HPATR+FQALR+ VN+E++EL   L +  + L  GG 
Sbjct: 182 TTGRLAEVVAAAYPAKWRAMARQHPATRTFQALRMAVNDELKELEAFLAAVPEYLATGGR 241

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
           + V+SFHSLEDRLVK+ F   +   +  R  ++    H A    +TKK V+  +E+VA N
Sbjct: 242 VAVISFHSLEDRLVKRAFRLEATDCLCPREQVVCVCGHKARLAILTKKPVMAGEEEVAAN 301

Query: 304 RRSRSAKLRAGMRTVERSIEDDS 326
            R+RSAKLR   R  + +   D+
Sbjct: 302 PRARSAKLRVARRLPDAAEATDA 324


>gi|313156840|gb|EFR56280.1| S-adenosyl-methyltransferase MraW [Alistipes sp. HGB5]
          Length = 368

 Score =  352 bits (903), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 118/304 (38%), Positives = 167/304 (54%), Gaps = 16/304 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H PVLL++ + LL   P    +D TFG GG+SR   +    G  + A D+D    +   +
Sbjct: 70  HTPVLLKESVDLLAVDPAGTYVDLTFGGGGHSRRILEKLGPGGRLYAFDQDRDTRANCPD 129

Query: 77  TMRDYKEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +F   ++ F  L+  +     + VDG++ DLGVSS   D  +RGFSF+   PL
Sbjct: 130 -----DGRFHYVESNFRFLRGALRLREVEQVDGILADLGVSSHHFDAVERGFSFRGEAPL 184

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  G ++A+ VVN      LTR+LG  GE +   +IA+ IV+ R++AP +TT  L 
Sbjct: 185 DMRMNQRGALTAARVVNGYPADALTRLLGEWGELETPWKIANCIVRAREAAPIETTAQLV 244

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
             ++      K +     T+ FQALRI VN E+E L   L  + K L+ GG L+V+S+HS
Sbjct: 245 EAVKPCTP--KKDESKFLTKLFQALRIEVNGEMEALKMALEQSLKVLRPGGRLVVISYHS 302

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDRLVK F  S +      +        P  F+ IT+K VVPT E++  N RSRSAKLR
Sbjct: 303 LEDRLVKNFLRSGNFSGSVEKDFFGRALTP--FEIITRKAVVPTAEELERNPRSRSAKLR 360

Query: 313 AGMR 316
           A  +
Sbjct: 361 AAAK 364


>gi|16273056|ref|NP_439288.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae Rd KW20]
 gi|145630229|ref|ZP_01786011.1| S-adenosyl-methyltransferase [Haemophilus influenzae R3021]
 gi|260580214|ref|ZP_05848044.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae RdAW]
 gi|260581821|ref|ZP_05849617.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae NT127]
 gi|1175483|sp|P45057|RSMH_HAEIN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|1574685|gb|AAC22785.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
 gi|144984510|gb|EDJ91933.1| S-adenosyl-methyltransferase [Haemophilus influenzae R3021]
 gi|260093498|gb|EEW77431.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae RdAW]
 gi|260095014|gb|EEW78906.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae NT127]
          Length = 321

 Score =  352 bits (903), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 122/325 (37%), Positives = 174/325 (53%), Gaps = 20/325 (6%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M+S    +  +H+ VLL + +  L      + +D TFG GG+SR           +IA+D
Sbjct: 1   MNSENSFSSSEHITVLLHEAVNGLALKENGIYIDGTFGRGGHSRFILSQLSSNGRLIAVD 60

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCG 121
           RDP A++   +       +F +   +FS + +          +DG++ DLGVSS Q+D  
Sbjct: 61  RDPRAIAEAHKI---QDLRFQIEHNSFSHIPEICDKLNLVGKIDGILLDLGVSSPQLDEA 117

Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF K GPLDMRM  + G+SA + + Q +++DLT +L   GEE+ A RIA AIV   
Sbjct: 118 ERGFSFMKDGPLDMRMDTTQGLSAEEWLKQVSIEDLTWVLKTFGEERFAKRIATAIVDFN 177

Query: 181 QSAP------FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234
           +SA          T  L+ LI + V F K+   HPATRSFQA+RIF+N+E++EL   L S
Sbjct: 178 KSAVKNGTEFLSRTSQLAELISQAVPF-KDKHKHPATRSFQAIRIFINSELDELESLLNS 236

Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS--ITKKV 292
           A   L   G L ++SFHSLEDR+VK F   +S      + +          Q   I  K 
Sbjct: 237 ALDMLAPEGRLSIISFHSLEDRMVKHFMKKQSKGEDIPKGLPLREDQIQRNQKLRIIGKA 296

Query: 293 VVPTQEDVAFNRRSRSAKLRAGMRT 317
           + P+  ++  N RSRSA LR   R 
Sbjct: 297 IQPSDAEIQANPRSRSAILRVAERI 321


>gi|262831548|sp|A9WRE6|RSMH_RENSM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 331

 Score =  352 bits (903), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 120/326 (36%), Positives = 183/326 (56%), Gaps = 15/326 (4%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNPAPGK--------VILDATFGAGGYSRSFCKMGS-- 59
           ++        HVPVL ++ + LL PA           V++DAT G GG+S +        
Sbjct: 3   TTPPPADAPRHVPVLRDRCVNLLAPAIEAANLAGRRAVVVDATLGMGGHSEAMLTRFENL 62

Query: 60  NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSM 116
           ++I +DRD  A+      ++ ++++  L  A + ++ + + D G   +DGV+ DLGVSS+
Sbjct: 63  HLIGIDRDTQALDLSGARLKPFEDRTDLVHAVYDEITEVLDDLGFESIDGVLMDLGVSSL 122

Query: 117 QIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175
           Q+D  +RGF++    PLDMRM  S G SA+DVVN  +  +L  I+   GEEK A RIA+ 
Sbjct: 123 QLDEAERGFAYSYDAPLDMRMDTSRGQSAADVVNSYSETELVSIIRRWGEEKFAGRIANR 182

Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRS 234
           IV  R   PF  T +L  +I+K V  +      HPA R+FQALRI VN E+  L + + +
Sbjct: 183 IVAARAEKPFAGTGELVEVIRKAVPAAAARTGGHPAKRTFQALRIEVNEELVVLERAVPA 242

Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVV 294
           A  AL  GG  +V+S+HSLED++VKKFF++           +  ++     +++TK   V
Sbjct: 243 AVDALAIGGRAVVMSYHSLEDKIVKKFFSTGVTSSAPPGFPVELDSQKPELKTLTKGTEV 302

Query: 295 PTQEDVAFNRRSRSAKLRAGMRTVER 320
           PT+ ++A N R+ SA+LRA  R   R
Sbjct: 303 PTEAEIAENPRAASARLRAVERIRPR 328


>gi|172035001|ref|YP_001801502.1| S-adenosyl-methyltransferase MraW [Cyanothece sp. ATCC 51142]
 gi|263446171|sp|B1WZ70|RSMH_CYAA5 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|171696455|gb|ACB49436.1| putative methyltransferase [Cyanothece sp. ATCC 51142]
          Length = 315

 Score =  352 bits (903), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 115/325 (35%), Positives = 168/325 (51%), Gaps = 31/325 (9%)

Query: 1   MESKSCKTMSSAIHHTIGD----HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK 56
           + S +   M++  H    +    H PVL ++VI  L   P    LDAT G GG+SR   +
Sbjct: 10  LSSVTLIVMTNTDHPNQPNPPHLHTPVLCQEVIDGLAIEPNGHYLDATLGRGGHSRLILE 69

Query: 57  MGSNVI--ALDRDPFAVSCGQETMRDYKE-QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
              +V    +D D  A++  QE      + +  ++Q  F+     + +   +G++ DLGV
Sbjct: 70  AFPDVRVTGIDLDEEAIAITQENFSLMGDKRLQVWQGNFADYPGEIGE--FNGIIADLGV 127

Query: 114 SSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRI 172
           SS Q D  +RGFSF+   PLDMRM+    ++A +++N  +   L  +    GEE+++  I
Sbjct: 128 SSPQFDVPERGFSFRHQAPLDMRMNREQSLTAGEIINHWDQTSLADLFYQYGEERRSRAI 187

Query: 173 AHAIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQG 231
           A  +V++R   PF+TT +L+  I K      +  RIHPATR FQALRI VN+E+  L + 
Sbjct: 188 ARRLVQQR---PFETTTELAEAIAKCFPPKQRYGRIHPATRVFQALRIAVNDELGSLERF 244

Query: 232 LRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKK 291
           L  A   LK GG + ++SFHSLEDR VK  F                     +   ITKK
Sbjct: 245 LEKAPHWLKPGGRIGIISFHSLEDRRVKYSFRDS-----------------LLLDVITKK 287

Query: 292 VVVPTQEDVAFNRRSRSAKLRAGMR 316
            ++P  E+   N RSRSAKLR   R
Sbjct: 288 PIIPQPEEEEKNPRSRSAKLRFAQR 312


>gi|319897403|ref|YP_004135600.1| s-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Haemophilus influenzae F3031]
 gi|317432909|emb|CBY81275.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Haemophilus influenzae F3031]
          Length = 321

 Score =  352 bits (903), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 122/325 (37%), Positives = 174/325 (53%), Gaps = 20/325 (6%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M+S    +  +H+ VLL + +  L      + +D TFG GG+SR           +IA+D
Sbjct: 1   MNSENSFSSSEHITVLLHEAVNGLALKENGIYIDGTFGRGGHSRFILSQLSFNGRLIAVD 60

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCG 121
           RDP A++   +       +F +   +FS + +          +DG++ DLGVSS Q+D  
Sbjct: 61  RDPRAIAEAHKI---QDLRFQIEHNSFSHIPEICDKLNLVGKIDGILLDLGVSSPQLDEA 117

Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF K GPLDMRM  + G+SA + + Q +++DLT +L   GEE+ A RIA AIV   
Sbjct: 118 ERGFSFMKDGPLDMRMDTTQGLSAEEWLKQVSIEDLTWVLKTFGEERFAKRIATAIVDFN 177

Query: 181 QSAP------FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234
           +SA          T  L+ LI + V F K+   HPATRSFQA+RIF+N+E++EL   L S
Sbjct: 178 KSAVKNSTEFLSRTSQLAELISQAVPF-KDKHKHPATRSFQAIRIFINSELDELESLLNS 236

Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS--ITKKV 292
           A   L   G L ++SFHSLEDR+VK F   +S      + +          Q   I  K 
Sbjct: 237 ALDMLAPEGRLSIISFHSLEDRMVKHFMKKQSKGEDIPKGLPLREDQIQRNQKLRIIGKA 296

Query: 293 VVPTQEDVAFNRRSRSAKLRAGMRT 317
           + P+  ++  N RSRSA LR   R 
Sbjct: 297 IQPSDAEIQANPRSRSAILRVAERI 321


>gi|282889763|ref|ZP_06298302.1| hypothetical protein pah_c004o134 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500337|gb|EFB42617.1| hypothetical protein pah_c004o134 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 310

 Score =  352 bits (903), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 114/305 (37%), Positives = 170/305 (55%), Gaps = 8/305 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H  VL+++VI   +P   ++ +D T GAGG+S +          +IA+D+DP A++   E
Sbjct: 5   HQSVLMKEVIESFSPCSLRIFIDGTAGAGGHSAALLATHPEIERLIAIDQDPLALTVAAE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  + E+ +     F  L+ ++       VDG++ DLGVSSMQ+D  ++GFSF K GPL
Sbjct: 65  NLAPWSEKVTFVSGNFENLEKFLDQLEISTVDGILLDLGVSSMQLDIAEKGFSFSKEGPL 124

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM   + ++A+ VVN    K+L RI    GEE+     A AIV+ R      TTQ L 
Sbjct: 125 DMRMDPRNPLTAAIVVNTWPQKELERIFRDYGEERHWRAAARAIVQARAEKQILTTQQLV 184

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +++  + F+   RIHP T  FQALRI VN E++ + + + +A + LK GG L ++SFHS
Sbjct: 185 EVLRPVLRFNPAKRIHPCTLVFQALRICVNKELDVVERVIPAAIRRLKKGGRLGIISFHS 244

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPS-NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LED +VK  F   +      R +           + +T+K +V   E+VA N RSRSAKL
Sbjct: 245 LEDGIVKNLFRHAASDKWDTRGLAGLFRDKDPEVRLLTRKPLVANDEEVAANPRSRSAKL 304

Query: 312 RAGMR 316
           R   +
Sbjct: 305 RVLEK 309


>gi|68249679|ref|YP_248791.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae 86-028NP]
 gi|148826257|ref|YP_001291010.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae PittEE]
 gi|229846161|ref|ZP_04466273.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae 7P49H1]
 gi|81335891|sp|Q4QLG6|RSMH_HAEI8 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263456014|sp|A5UCX6|RSMH_HAEIE RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|68057878|gb|AAX88131.1| predicted S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [Haemophilus influenzae
           86-028NP]
 gi|148716417|gb|ABQ98627.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae PittEE]
 gi|229811165|gb|EEP46882.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae 7P49H1]
          Length = 321

 Score =  352 bits (903), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 122/325 (37%), Positives = 174/325 (53%), Gaps = 20/325 (6%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M+S    +  +H+ VLL + +  L      + +D TFG GG+SR           +IA+D
Sbjct: 1   MNSENSFSSSEHITVLLHEAVNGLALKENGIYIDGTFGRGGHSRFILSQLSSNGRLIAVD 60

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCG 121
           RDP A++   +       +F +   +FS + +          +DG++ DLGVSS Q+D  
Sbjct: 61  RDPRAIAEAHKI---QDLRFQIEHNSFSHIPEICDKLNLVGKIDGILLDLGVSSPQLDEA 117

Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF K GPLDMRM  + G+SA + + Q +++DLT +L   GEE+ A RIA AIV   
Sbjct: 118 ERGFSFMKDGPLDMRMDTTQGLSAEEWLKQVSIEDLTWVLKTFGEERFAKRIATAIVDFN 177

Query: 181 QSAP------FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234
           +SA          T  L+ LI + V F K+   HPATRSFQA+RIF+N+E++EL   L S
Sbjct: 178 KSAVKNSTEFLSRTSQLAELISQAVPF-KDKHKHPATRSFQAIRIFINSELDELESLLNS 236

Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS--ITKKV 292
           A   L   G L ++SFHSLEDR+VK F   +S      + +          Q   I  K 
Sbjct: 237 ALDMLAPEGRLSIISFHSLEDRMVKHFMKKQSKGEDIPKGLPLREDQIQRNQKLRIIGKA 296

Query: 293 VVPTQEDVAFNRRSRSAKLRAGMRT 317
           + P+  ++  N RSRSA LR   R 
Sbjct: 297 IQPSDAEIQANPRSRSAILRVAERI 321


>gi|153874645|ref|ZP_02002785.1| Bacterial methyltransferase [Beggiatoa sp. PS]
 gi|152068890|gb|EDN67214.1| Bacterial methyltransferase [Beggiatoa sp. PS]
          Length = 339

 Score =  352 bits (903), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 115/325 (35%), Positives = 169/325 (52%), Gaps = 24/325 (7%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72
           +  +H PVLL + +  L      + +D TFG GG++++          V+A D+DP AV 
Sbjct: 9   SQNEHQPVLLAEALKALTIYDDSIYIDCTFGRGGHTKAILNDLGPSGQVLAFDQDPEAVQ 68

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQ 128
              + +     +F++  + F+QLQ  V  +G    V+GV+ DLGVSS Q++   RGFSF 
Sbjct: 69  IA-KALCLTDNRFNIIYSPFTQLQQQVEKRGWLGQVNGVLLDLGVSSPQLNTPTRGFSFM 127

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
             GPLDMRM+  SG S  + +NQA+  ++  +L   GEE+ A  IA AIV  R  A  +T
Sbjct: 128 HDGPLDMRMNPNSGTSIGEWLNQADTDEIALVLKTYGEERHARHIAKAIVMARSKAELKT 187

Query: 188 TQDLSSLIQKT-VYFSKN--------------NRIHPATRSFQALRIFVNNEIEELAQGL 232
           T  L+ +I    + + K                  HPAT++FQALRIF+N+E+E+L Q L
Sbjct: 188 TCQLAEIISAVSIPYPKKMAHSSSSLKWGTQKKFKHPATQTFQALRIFINHELEQLQQVL 247

Query: 233 RSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV 292
             A   L  GG L+V+SFHSLEDR+VK+F             M  +    +       K 
Sbjct: 248 PQALDVLAPGGRLVVISFHSLEDRIVKRFIRDCVRGDDFPPTMPITADQLSPSLLAIGKP 307

Query: 293 VVPTQEDVAFNRRSRSAKLRAGMRT 317
           + PT  +   N R+RSA +R   + 
Sbjct: 308 IKPTLAETQANPRARSAIMRVAEKI 332


>gi|302344989|ref|YP_003813342.1| S-adenosyl-methyltransferase MraW [Prevotella melaninogenica ATCC
           25845]
 gi|302149179|gb|ADK95441.1| S-adenosyl-methyltransferase MraW [Prevotella melaninogenica ATCC
           25845]
          Length = 314

 Score =  351 bits (902), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 110/306 (35%), Positives = 169/306 (55%), Gaps = 13/306 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H+PVLL + I  LN     V +D TFG GG+SR         S++ + D+D  A      
Sbjct: 9   HIPVLLNESIEGLNLHANGVYVDVTFGGGGHSREILSRLAEDSHLYSFDQDADAEQNIDN 68

Query: 77  --TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                +  ++F+  ++ F  L++++    V   DG++ DLGVSS   D   RGFSF+   
Sbjct: 69  MGLSDEQVDRFTFVRSNFRYLKNWMRYYDVGYIDGLLADLGVSSHHFDDETRGFSFRFEA 128

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+  +GI+A+D++N  + + L  IL + GE KQ+ RIA AIVK R    ++TT D
Sbjct: 129 PLDMRMNKRAGITAADILNDYDEERLADILYLYGELKQSRRIASAIVKARGQKTYKTTND 188

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L + I+   +F +        + FQALRI VN+E++ L + L +A + L+ GG L V+++
Sbjct: 189 LLTTIEP--FFQRAREKKDMAKMFQALRIEVNHEMDALKEMLMAATELLRPGGRLSVITY 246

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDR+VK    S + +    +        P  F+ +  KV+  + ++   N RSRSAK
Sbjct: 247 HSLEDRMVKNIMKSGNIEGKVKQDFFGRIETP--FRLVNNKVITASNDEQERNPRSRSAK 304

Query: 311 LRAGMR 316
           LR   +
Sbjct: 305 LRIAEK 310


>gi|58698054|ref|ZP_00372978.1| S-adenosyl-methyltransferase MraW [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|225629940|ref|YP_002726731.1| S-adenosyl-methyltransferase [Wolbachia sp. wRi]
 gi|254813210|sp|C0R598|RSMH_WOLWR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|58535411|gb|EAL59486.1| S-adenosyl-methyltransferase MraW [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|225591921|gb|ACN94940.1| S-adenosyl-methyltransferase [Wolbachia sp. wRi]
          Length = 293

 Score =  351 bits (902), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 125/302 (41%), Positives = 183/302 (60%), Gaps = 18/302 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQETM 78
           H PVLL+++++LL+P  G + +DATFGAGGYS++  +     V A+DRD        +  
Sbjct: 3   HTPVLLKEMLSLLSPQDGGIYVDATFGAGGYSKAILESADCKVYAIDRDETVTKFYDDLS 62

Query: 79  RDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
             Y ++  LF   FS +++ +      G+DG+VFD+GVSSMQ+D GDRGFSF   GPLDM
Sbjct: 63  VRYPDRIKLFIEKFSNIKNLLDSNNIEGIDGIVFDIGVSSMQLDNGDRGFSFLHDGPLDM 122

Query: 136 RMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
            M  S  I+AS  VN    +++   +   G E+ + +IA AIV  R+    +TT +L+ +
Sbjct: 123 SMDNSSYINASTFVNALREEEIANTIYNYGGERHSRKIARAIVNARKKKTIKTTFELADI 182

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           ++  V+  K ++I PATR+FQA+RI+VN+E+ EL +G+++A + L   G LIVV+FHSLE
Sbjct: 183 VRSVVFRGK-SKIDPATRTFQAIRIWVNDELGELEKGIKAASEILSENGKLIVVTFHSLE 241

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           DR+VK FF                      F  + KKV+  + E+V+ N RSRSAKLRA 
Sbjct: 242 DRIVKTFFKDLCATDC------------KTFSLLNKKVIEASIEEVSANPRSRSAKLRAI 289

Query: 315 MR 316
            R
Sbjct: 290 QR 291


>gi|261401195|ref|ZP_05987320.1| S-adenosyl-methyltransferase MraW [Neisseria lactamica ATCC 23970]
 gi|269208876|gb|EEZ75331.1| S-adenosyl-methyltransferase MraW [Neisseria lactamica ATCC 23970]
          Length = 319

 Score =  351 bits (902), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 120/324 (37%), Positives = 171/324 (52%), Gaps = 13/324 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           MS   ++    H+ VL  + +  L      V +D TFG GG+SR           ++  D
Sbjct: 1   MSETENY---RHITVLPYEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLVVFD 57

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGD 122
           +DP AV+  +E +    ++ S+    F+  Q  + D G   VDG +FDLGVSS QID   
Sbjct: 58  KDPRAVAAAEE-LARSDKRVSVVHGGFASFQTALDDLGIGDVDGALFDLGVSSPQIDDAA 116

Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF+   PLDMRM  + G+SA++ +  A+ +DL  ++   GEE+ + +IA AIV +R 
Sbjct: 117 RGFSFRFDAPLDMRMDTTRGMSAAEWIASASEQDLHEVIKNYGEERFSRQIARAIVAQRA 176

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
             P  TT+ L+ L  + V   +  +  PATR+FQA+RIF+N E+EE+   L      LK 
Sbjct: 177 ENPIDTTRKLAQLAAQNVRTRERGQ-DPATRTFQAVRIFINRELEEVEAVLPQVMCRLKQ 235

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDV 300
           GG L V++FHSLEDR+VK+F    S      R      A  P     I  K + P   +V
Sbjct: 236 GGRLAVIAFHSLEDRIVKQFVGKYSRHAPLPRWAAVREADLPEPPLKIVGKALKPGGAEV 295

Query: 301 AFNRRSRSAKLRAGMRTVERSIED 324
           A N R+RSA LR   RT      +
Sbjct: 296 AANPRARSAVLRVAERTAGPIPAE 319


>gi|186685061|ref|YP_001868257.1| S-adenosyl-methyltransferase MraW [Nostoc punctiforme PCC 73102]
 gi|262824674|sp|B2J183|RSMH_NOSP7 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|186467513|gb|ACC83314.1| S-adenosyl-methyltransferase MraW [Nostoc punctiforme PCC 73102]
          Length = 298

 Score =  351 bits (902), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 112/310 (36%), Positives = 167/310 (53%), Gaps = 26/310 (8%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFA 70
           +      H+ VL  +VI  L   PG   LD T G GG+SR   +  ++V   A+D+D  A
Sbjct: 11  LEELAFSHISVLGREVIEGLAVRPGGHYLDVTVGGGGHSRLILEAAADVRVTAVDQDEDA 70

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           +    + + +Y ++     + F+  +   P    DG++ DLGVSS  +D  +RGFSF+++
Sbjct: 71  LVAANKNLAEYSDRIQFIYSNFADYE--FPPNTFDGILADLGVSSYHLDQAERGFSFRQA 128

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM     ++A+DV+N  +  +L  I    GEE+ + RIA  IV+RR   P  TT 
Sbjct: 129 ANLDMRMDRGRSLTAADVINNWDEAELADIFFKYGEERLSRRIARRIVERR---PLHTTT 185

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L+  I  +V    +  RIHPATR FQALRI VN+E++ L   L  A  AL  GG + ++
Sbjct: 186 ELADAIASSVPPKYRYGRIHPATRVFQALRIVVNDELKSLETFLDKAPNALVPGGRIAII 245

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDR VK    +                   + + +TKK ++  +E+++ N RSRS
Sbjct: 246 SFHSLEDRPVKHGLRNS-----------------PLLKVLTKKPIIAQEEEISNNPRSRS 288

Query: 309 AKLRAGMRTV 318
           AKLR   + V
Sbjct: 289 AKLRIAEKLV 298


>gi|302550804|ref|ZP_07303146.1| MraW methylase [Streptomyces viridochromogenes DSM 40736]
 gi|302468422|gb|EFL31515.1| MraW methylase [Streptomyces viridochromogenes DSM 40736]
          Length = 318

 Score =  351 bits (902), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 125/310 (40%), Positives = 185/310 (59%), Gaps = 10/310 (3%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           HVPV+L++ + LL PA   PG V++D T G GG+S +  +      ++ALDRD  A+   
Sbjct: 6   HVPVMLQRCLDLLAPALEGPGPVVVDCTLGLGGHSEALLERFPEARLVALDRDKEALRLA 65

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            E +  Y E+ +L  A + +L + +   G   V GV+FDLGVSSMQ+D  DRGF++ +  
Sbjct: 66  GERLAPYGERATLVHAVYDELPEVLDKLGIRRVQGVLFDLGVSSMQLDEADRGFAYAQDA 125

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + G+SA++V+N     +L RIL   GEEKQA RI  AIV+ R+  PF  +  
Sbjct: 126 PLDMRMDQTTGVSAAEVLNTYPPGELVRILRAYGEEKQAKRIVAAIVREREKEPFSNSAR 185

Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  LI+  +   +K    +PA R+FQALRI VN E+  L + + +A +AL  GG + V+S
Sbjct: 186 LVELIRDALPQAAKRTGGNPAKRTFQALRIEVNGELAVLERAVPAAVEALDVGGRIAVLS 245

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           +HSLEDRLVK+ FA+ +         +    +    + +T+   +PT+E++A NRR+  A
Sbjct: 246 YHSLEDRLVKQVFAAGAATTAPPGLPVVPERYQPRLKLLTRGAELPTEEEIAENRRAAPA 305

Query: 310 KLRAGMRTVE 319
           +LR   R  E
Sbjct: 306 RLRGAQRIRE 315


>gi|226943445|ref|YP_002798518.1| S-adenosyl-methyltransferase MraW [Azotobacter vinelandii DJ]
 gi|263446785|sp|C1DQ91|RSMH_AZOVD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|226718372|gb|ACO77543.1| S-adenosyl-methyltransferase MraW [Azotobacter vinelandii DJ]
          Length = 313

 Score =  351 bits (902), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 116/308 (37%), Positives = 175/308 (56%), Gaps = 14/308 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H+ VLLE+ +  L+   G   LD TFG GG+SR        G  ++  D+DP AV+ G  
Sbjct: 7   HITVLLEEAVDALSIREGGCYLDGTFGRGGHSRLILGRLGAGGILLGFDKDPQAVAAGLA 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            +     +F + Q +F++L D +  +G    V GV+ DLGVSS Q+D  +RGFSF   GP
Sbjct: 67  -LATEDARFVIVQRSFAELADEMKMRGLVGKVSGVLLDLGVSSPQLDDPERGFSFLNDGP 125

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM    G+SA++ + QA+ +++  +    GEE+ A R+A A+V+RRQ  PF+ T DL
Sbjct: 126 LDMRMDPGRGLSAAEWLAQASCEEIAHVFKDYGEERFARRMAQAVVQRRQERPFERTADL 185

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++       +  + +PATR+FQ LRI +NNE+ +L QGL +A + L+ GG L V+SFH
Sbjct: 186 AQVLAAANPAWEKGK-NPATRAFQGLRIHINNELGDLEQGLDAALEVLEVGGRLAVISFH 244

Query: 252 SLEDRLVKKFFA---SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SLEDR+VK+F           +     I   A     + I  K    ++ ++  N R+RS
Sbjct: 245 SLEDRIVKRFMRRQVKGEADKLPRDLPIRPAAFEPRLKLI-GKPRYASESELKTNPRARS 303

Query: 309 AKLRAGMR 316
           A +R   +
Sbjct: 304 AIMRVAEK 311


>gi|156741091|ref|YP_001431220.1| S-adenosyl-methyltransferase MraW [Roseiflexus castenholzii DSM
           13941]
 gi|262826161|sp|A7NIA2|RSMH_ROSCS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|156232419|gb|ABU57202.1| S-adenosyl-methyltransferase MraW [Roseiflexus castenholzii DSM
           13941]
          Length = 312

 Score =  351 bits (901), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 113/305 (37%), Positives = 168/305 (55%), Gaps = 22/305 (7%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
            H PVLL + +A L P PG   +D T G GG++ +  +       ++ +D DP A++   
Sbjct: 22  HHTPVLLTETLAGLQPHPGGWYIDGTVGGGGHAAAILEATAPDGRLLGIDCDPAALAAAA 81

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +  Y E+ +L + +F ++       G   V GV+ DLGVSS Q+D  +RGFSFQ S P
Sbjct: 82  ARLAPYGERVTLVRGSFREIGRLAHKAGFVQVQGVLLDLGVSSYQLDTPERGFSFQASAP 141

Query: 133 LDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMR+      +A+++VN    +DL  ++    EE+ + RIA AIV+ RQ  P  TT +L
Sbjct: 142 LDMRLDPDAPMTAANLVNDLPERDLADLIFRYSEERGSRRIARAIVEARQRRPITTTDEL 201

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++ + +   +  RIHPATR+FQALRI VN+E+  L   L    + L  GG + +++FH
Sbjct: 202 AEIVSRAL-GGRRGRIHPATRTFQALRIAVNDELTSLDAALPQIVELLVVGGRMAIITFH 260

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+VK+F                + A     + IT+K V  + E+   N RSRSAKL
Sbjct: 261 SLEDRIVKQFMR--------------AEAQAGHLRLITRKPVEASSEEQRINPRSRSAKL 306

Query: 312 RAGMR 316
           R   R
Sbjct: 307 RVAER 311


>gi|237799282|ref|ZP_04587743.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331022138|gb|EGI02195.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 313

 Score =  351 bits (901), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 112/307 (36%), Positives = 174/307 (56%), Gaps = 12/307 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H+ VLLE+ +  L        LD TFG GG+SR           ++  D+DP A++ GQ 
Sbjct: 7   HITVLLEEAVEALAVRADGCYLDGTFGRGGHSRLILSHLGPDGRLLGFDKDPQAIATGQA 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            +     +F + Q +F++L     ++     V G++ DLGVSS Q+D  +RGFSF   GP
Sbjct: 67  -LAAEDGRFVIVQRSFAELGSEALERDLAGKVSGILLDLGVSSPQLDDPERGFSFMNDGP 125

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G+SA++ +  A  +++ R+    GEE+ A R+A+A+V+RR+  PF+ T DL
Sbjct: 126 LDMRMDPTRGVSAAEFIASAPAEEIARVFKEYGEERFAKRMANAVVQRREIQPFERTADL 185

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + +++      +  + +PATR+FQ LRI VNNE+ +L  GL +A +AL+ GG L+V+SFH
Sbjct: 186 AEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAAMEALEVGGRLVVISFH 244

Query: 252 SLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK F    + G+   +   +P        +  I  K    +  +   N RSRSA
Sbjct: 245 SLEDRIVKLFMRKLAKGEADNMPRNLPIQYKAFEPKIKIHGKAQFASDTETKANPRSRSA 304

Query: 310 KLRAGMR 316
            +R   +
Sbjct: 305 VMRVAEK 311


>gi|146299563|ref|YP_001194154.1| S-adenosyl-methyltransferase MraW [Flavobacterium johnsoniae UW101]
 gi|189082215|sp|A5FIX6|RSMH_FLAJ1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|146153981|gb|ABQ04835.1| S-adenosyl-methyltransferase MraW [Flavobacterium johnsoniae UW101]
          Length = 302

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 107/316 (33%), Positives = 171/316 (54%), Gaps = 21/316 (6%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           M++ + +    H PVLL   +  L+  P  + +D TFG GG+S+   +       + A D
Sbjct: 1   MTTTMEY----HNPVLLHPTVDGLDIKPDGIYVDVTFGGGGHSKEILRRLGPNGKLFAFD 56

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGD 122
           +D  A++          E+F+L    F  ++ ++   G   VDG++ DLGVSS Q D  +
Sbjct: 57  QDEDALANAL-----PDERFTLINENFRFIKRFLRFHGIKAVDGILADLGVSSHQFDVPE 111

Query: 123 RGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFS +    LDMRMS  + ++A  VVN+   +DL R+    GE K A  +A  IV+ R 
Sbjct: 112 RGFSTRFDAELDMRMSQKNDLNAYRVVNEYEEQDLRRVFFDYGELKNAPVLARTIVEARH 171

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
             P +TT +L  +++K +     N+I    + +QA+RI VN E++ L + +  + + LK 
Sbjct: 172 HRPIKTTDELKEVLKKYLPEKVRNKI--LAQIYQAIRIEVNQEMDVLKEFIEQSLEILKP 229

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           GG   V+S+HSLEDRLVK+F  +   +    R    + + P  F++I  K++VP  E++ 
Sbjct: 230 GGRFSVISYHSLEDRLVKRFIKNGMFEGEPERDFYGNFSVP--FKTI-GKLIVPDDEEIK 286

Query: 302 FNRRSRSAKLRAGMRT 317
            N R+RSAKLR   + 
Sbjct: 287 INNRARSAKLRIAEKI 302


>gi|290961148|ref|YP_003492330.1| SAM-dependent methyltransferase [Streptomyces scabiei 87.22]
 gi|260650674|emb|CBG73790.1| putative SAM-dependent methyltransferase [Streptomyces scabiei
           87.22]
          Length = 318

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 125/310 (40%), Positives = 183/310 (59%), Gaps = 10/310 (3%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           HVPV+L++ + +L PA   PG V++D T G GG+S +         ++ALDRD  A+   
Sbjct: 6   HVPVMLQRCLDMLAPALTEPGAVVVDCTLGLGGHSEALLTRFPEARLVALDRDKEALRLS 65

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            E +  + E+ +L  A + +L + +   G   V GV+FDLGVSSMQ+D  DRGF++ +  
Sbjct: 66  GERLAPFGERATLVHAVYDELPEVLDRLGLPRVQGVLFDLGVSSMQLDEADRGFAYAQDA 125

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + GI A++V+N     +L RIL   GEEKQA RI  AIV+ R   PF  +  
Sbjct: 126 PLDMRMDQTTGIGAAEVLNTYPAGELVRILRAYGEEKQAKRIVSAIVRERDKEPFTNSAR 185

Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  LI+ ++   +K    +PA R+FQALRI VN E+  L + + +A KAL  GG + V+S
Sbjct: 186 LVELIRDSLPQAAKRTGGNPAKRTFQALRIEVNGELTVLERAVPAAVKALAVGGRIAVLS 245

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           +HSLEDRLVK+ FA+ +         +    +    + +T+   +PT+E+VA NRR+  A
Sbjct: 246 YHSLEDRLVKQVFAAGAAVTAPPGLPVVPERYQPRLKLLTRGAELPTEEEVAENRRAAPA 305

Query: 310 KLRAGMRTVE 319
           +LR   R  E
Sbjct: 306 RLRGAERVRE 315


>gi|303258244|ref|ZP_07344251.1| S-adenosyl-methyltransferase MraW [Burkholderiales bacterium
           1_1_47]
 gi|331001080|ref|ZP_08324711.1| S-adenosyl-methyltransferase MraW [Parasutterella excrementihominis
           YIT 11859]
 gi|302858997|gb|EFL82081.1| S-adenosyl-methyltransferase MraW [Burkholderiales bacterium
           1_1_47]
 gi|329569385|gb|EGG51163.1| S-adenosyl-methyltransferase MraW [Parasutterella excrementihominis
           YIT 11859]
          Length = 322

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 120/315 (38%), Positives = 177/315 (56%), Gaps = 16/315 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H PVL E+   LL   P  V +D TFG GG+SR   +       +IA DRD  AV    +
Sbjct: 8   HRPVLAEESPRLLVTDPNGVYVDGTFGRGGHSRLILEKLSPQGRLIAFDRDEEAVKAAAQ 67

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +F +  A F+ +++ +   G+D   G+  D+GVSS QID  +RGFSF+  GPL
Sbjct: 68  I---QDPRFQIIHAPFASMKEELAKIGIDKVTGIFLDIGVSSPQIDDPERGFSFRFDGPL 124

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  S G +A++ + +A+  ++ ++   LGEE+ A + A AI K R   P   T+ L+
Sbjct: 125 DMRMDTSAGETAAEWIARADAAEMAKVFKDLGEERFAMKAAKAIEKVRTKEPILRTKQLA 184

Query: 193 SLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            LI  T+  +K +   HPATR FQA+RI VN E+E+L + L SA   L  GG+L V+SFH
Sbjct: 185 DLIAATLPRNKKDSAQHPATRIFQAIRIHVNQELEQLKRALESAGSLLLPGGVLAVISFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVR---HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SLEDR+VKKFF + +     +     ++PS     +F    +  ++P++++   N R+RS
Sbjct: 245 SLEDRIVKKFFEAAANPASCIDPRLPLLPSQLPQPLFNRAVR--ILPSEKECEENPRARS 302

Query: 309 AKLRAGMRTVERSIE 323
           + LR   RT     E
Sbjct: 303 SVLRGASRTDAPWPE 317


>gi|77414796|ref|ZP_00790918.1| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae 515]
 gi|77159158|gb|EAO70347.1| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae 515]
          Length = 298

 Score =  351 bits (900), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 96/298 (32%), Positives = 156/298 (52%), Gaps = 10/298 (3%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDYKE--QF 85
           +L+  P  + +DAT G  G+S           ++ A D+D  A+      ++ Y +  Q 
Sbjct: 1   MLDIKPDGIYVDATLGGAGHSEYLLSQLGPDGHLYAFDQDQKAIDNAHIRLKKYVDTGQV 60

Query: 86  SLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-G 141
           +  +  F  L   +   GV   +G+ +DLGVSS Q+D  +RGFS+++  PLDMRM+    
Sbjct: 61  TFIKDNFRNLSSNLKALGVSEINGICYDLGVSSPQLDERERGFSYKQDAPLDMRMNREQS 120

Query: 142 ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYF 201
           ++A DVVN  +  DL RI    GE+K + +IA  I + R   P  TT +L+ +I+ +   
Sbjct: 121 LTAYDVVNTYSYHDLVRIFFKYGEDKFSKQIARKIEQVRAEKPISTTTELAEIIKSSKSA 180

Query: 202 SK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKK 260
            +   + HPA + FQA+RI VN+E+    + ++ A   L   G + V++FHSLEDRL K+
Sbjct: 181 KELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDLLAVDGRISVITFHSLEDRLTKQ 240

Query: 261 FFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318
            F   S   +        +      + + +K ++P+QE++  N R+ SAKLR   R  
Sbjct: 241 LFKEASTVEVPKGLPFIPDDLQPKMELVNRKPILPSQEELEANNRAHSAKLRVARRIR 298


>gi|209696060|ref|YP_002263990.1| S-adenosyl-methyltransferase MraW [Aliivibrio salmonicida LFI1238]
 gi|263446678|sp|B6ELI3|RSMH_ALISL RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|208010013|emb|CAQ80336.1| S-adenosyl-methyltransferase MraW [Aliivibrio salmonicida LFI1238]
          Length = 316

 Score =  351 bits (900), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 124/314 (39%), Positives = 170/314 (54%), Gaps = 22/314 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           HV VLL + I  L   P  + +D TFG GG+SR           + ++DRDP A++  + 
Sbjct: 7   HVSVLLHESIDGLAIKPDGIYIDGTFGRGGHSRQILSRLGENGRLYSIDRDPQAIAEAKT 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  +F++    FS L+ YV + G    +DGV+ DLGVSS Q+D  DRGFSF K GP
Sbjct: 67  I---TDPRFNIIHGPFSGLKGYVEELGLVGQIDGVLLDLGVSSPQLDDADRGFSFMKDGP 123

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR---QSAPFQTT 188
           LDMRM   SG+  S  +  A+V+D+T ++   GE+K A RIA  IV  R   ++ P   T
Sbjct: 124 LDMRMDPTSGMPVSQWLLTADVEDITWVIREFGEDKHAWRIAKGIVAYRDNEENEPLTRT 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ LI      +   + HPATR+FQA RI++N+E++E+   L  A      GG L V+
Sbjct: 184 GQLAKLISDVAPKNFKEKKHPATRTFQAFRIYINSELDEIDTALNGALDVFAEGGRLSVI 243

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHP------AVFQSITKKVVVPTQEDVAF 302
           SFHSLEDR+VK F    S +   V H IP   +       A  + I  K + PT  +V  
Sbjct: 244 SFHSLEDRMVKHFIRKES-RGPQVPHGIPLTENQIKALGSAKMKPI-GKAIKPTVNEVDV 301

Query: 303 NRRSRSAKLRAGMR 316
           N RSRS+ LR   R
Sbjct: 302 NVRSRSSVLRIAER 315


>gi|262373648|ref|ZP_06066926.1| MraW methylase [Acinetobacter junii SH205]
 gi|262311401|gb|EEY92487.1| MraW methylase [Acinetobacter junii SH205]
          Length = 306

 Score =  351 bits (900), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 108/310 (34%), Positives = 170/310 (54%), Gaps = 16/310 (5%)

Query: 20  HVPVLLEKVIAL-LNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
           H+ VLL + +   L      + +DATFG GG+++         + V A D+DP A+    
Sbjct: 3   HISVLLHETVDGVLAGRDTGIYVDATFGRGGHTKLLLSKLDQNARVYAFDKDPQALEVAA 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + +     +F +  A+F+ LQ  + + G   VDGV+ DLGVSS Q+D  +RGFSF ++GP
Sbjct: 63  Q-LEQEDPRFKIIHASFADLQSELANIGITEVDGVMADLGVSSPQLDQAERGFSFMQNGP 121

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G +A++ + +   + L  I+   GEE+ + RIA AI +        TT  L
Sbjct: 122 LDMRMDNSKGPTAAEWLLEIEEEKLANIIYQYGEERYSRRIAKAIKQA---GELTTTAQL 178

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + L++      + ++ HPATR+FQA+RI +N E+E++   L  A + LK  G L V+SFH
Sbjct: 179 AELVKTAHPKWEKHK-HPATRTFQAIRIAINRELEDIEIFLPQAVELLKPKGQLAVISFH 237

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDRL+K+F    S         +P +       + +++  +  ++ +V  N RSRSA 
Sbjct: 238 SLEDRLIKQFIQKESTLAEDTGWGMPQAQIDTRRLKKVSR--IRASEAEVKANPRSRSAW 295

Query: 311 LRAGMRTVER 320
           LR   R  ++
Sbjct: 296 LRVAERLEKK 305


>gi|95930740|ref|ZP_01313473.1| methyltransferase [Desulfuromonas acetoxidans DSM 684]
 gi|95133220|gb|EAT14886.1| methyltransferase [Desulfuromonas acetoxidans DSM 684]
          Length = 318

 Score =  351 bits (900), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 126/306 (41%), Positives = 179/306 (58%), Gaps = 9/306 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H  VL  + + LL+   G  +LD T G  G+SR   +  +    +I LDRD  A++ G E
Sbjct: 8   HQSVLPTETLELLDLHAGDTVLDGTLGGAGHSRLILEATAPNGVLIGLDRDHDALANGAE 67

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  Y ++  L  A F+     V + G+DG   ++ DLGVSS Q+D  +RGFSF+   PL
Sbjct: 68  VLAAYGDRVILRHANFADANQVVEELGLDGLNGMLLDLGVSSYQLDQAERGFSFRADAPL 127

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM   G  +A+DVVN A V++LT I    GEE+ A RIA  I + RQ  P  TT  L+
Sbjct: 128 DMRMDQQGDETAADVVNTATVEELTLIFKKYGEERWAGRIARRIERIRQQTPITTTFQLA 187

Query: 193 SLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            L+++TV   +   RIHPATR FQALRI VN+E++ +A+G+      LK GG+L V+SFH
Sbjct: 188 ELVKETVPGGRVPARIHPATRVFQALRIRVNDELDSVAKGVEQGIGLLKPGGVLAVISFH 247

Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK  F  R+   +      + +    A  + +T++ V  ++ ++A N RSRSA 
Sbjct: 248 SLEDRIVKNIFRHRASPCVCPPRLPMCACGKKADVEVLTRRGVRASETEIAENPRSRSAV 307

Query: 311 LRAGMR 316
           LRA  R
Sbjct: 308 LRAVRR 313


>gi|110639131|ref|YP_679340.1| S-adenosyl-methyltransferase MraW [Cytophaga hutchinsonii ATCC
           33406]
 gi|122966614|sp|Q11RG6|RSMH_CYTH3 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|110281812|gb|ABG59998.1| S-adenosylmethionine methyltransferase [Cytophaga hutchinsonii ATCC
           33406]
          Length = 298

 Score =  351 bits (900), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 113/303 (37%), Positives = 168/303 (55%), Gaps = 14/303 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77
           HVPVLL++ +  LN  P  + +D TFG GG+SR   K   G  + A D+D  AV   ++ 
Sbjct: 3   HVPVLLKESVEGLNINPEGIYVDVTFGGGGHSREILKHLKGGKLYAFDQDADAVDNAKDL 62

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +      F+L  A F  ++ Y+   GVD   G++ DLG+SS QID  +RGFS +   PLD
Sbjct: 63  I---GPNFTLIPANFRYIKKYLRLNGVDKVDGLLGDLGISSHQIDTPERGFSIRYDAPLD 119

Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM  +   +A+D++N+ +   L  ILG+ GE + A  +A A+VK R + P   T +L  
Sbjct: 120 MRMDRAIDKTAADIINKYSEHGLHSILGMYGEVRNAKTLAQALVKERINKPINRTSELIE 179

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           ++       K ++     + FQALRI VN E+E L   L  +++ LK+GG L ++S+HSL
Sbjct: 180 VLSDYAPRGKESK--YYAQVFQALRIEVNEELEALKDLLEQSQQVLKSGGRLSIISYHSL 237

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           EDRLVK F         A + +  +   P  F+S+  K + P  E+   N R+RSA+LR 
Sbjct: 238 EDRLVKNFVQQGKFHGDAEKDLYGNTNKP--FKSV-GKAIDPDDEEKERNNRARSARLRI 294

Query: 314 GMR 316
             R
Sbjct: 295 AER 297


>gi|254787005|ref|YP_003074434.1| S-adenosyl-methyltransferase MraW [Teredinibacter turnerae T7901]
 gi|262825811|sp|C5BP42|RSMH_TERTT RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|237684519|gb|ACR11783.1| SAM-dependent methyltransferase MraW [Teredinibacter turnerae
           T7901]
          Length = 311

 Score =  350 bits (899), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 109/308 (35%), Positives = 172/308 (55%), Gaps = 14/308 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H  VLL++ +  L      V +D TFG GG+SR+  +       ++A D+DP AV+ G+E
Sbjct: 6   HYSVLLKESVDALVTNADGVYIDGTFGRGGHSRAVLQKLSPQGRLLAFDKDPEAVAYGRE 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVP------DKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +     +FS+   +F  +  +        +  + GV+ DLGVSS Q+D  +RGFSF   
Sbjct: 66  -LAGSDNRFSMVHDSFVNMASHWASAAHANNWSLSGVLLDLGVSSPQLDQAERGFSFMHD 124

Query: 131 GPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
           GPLDMRM   SG +A++ +N A   +L  ++   GEE+ A R+A AIV  R+ +P   T 
Sbjct: 125 GPLDMRMDNSSGQTAAEWINTAEESELAFVIKEYGEERFARRMARAIVAEREKSPITQTL 184

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            L++++ +          HPATR+FQA+RIF+N E+++L   L  + + L +GG L+V+S
Sbjct: 185 RLANIVSEANP-KWEKGKHPATRAFQAIRIFINRELDDLTATLAQSLEMLPSGGRLVVIS 243

Query: 250 FHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK+F   ++ GK   +   +  +      +++  K       ++A N RSRS
Sbjct: 244 FHSLEDRIVKRFMRDQARGKQFPIGMPVTEDMLEKKLKTL-GKAQRAGDRELAENIRSRS 302

Query: 309 AKLRAGMR 316
           A LR   +
Sbjct: 303 ATLRVAEK 310


>gi|323137901|ref|ZP_08072976.1| S-adenosyl-methyltransferase MraW [Methylocystis sp. ATCC 49242]
 gi|322396904|gb|EFX99430.1| S-adenosyl-methyltransferase MraW [Methylocystis sp. ATCC 49242]
          Length = 346

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 157/325 (48%), Positives = 203/325 (62%), Gaps = 8/325 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQ 75
              HVPVLL +VI  L P PG   LDATFGAGGY+R+      + V+ALDRDP AV  G+
Sbjct: 16  AARHVPVLLREVIDALRPTPGGRYLDATFGAGGYTRAILAHPETRVLALDRDPNAVRDGR 75

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +   + + +L +A FSQL +    +G    DGVVFD+GVSSMQ D  +RGFSF+  GP
Sbjct: 76  PLVEVARGRLTLVEARFSQLDEVARARGFAPLDGVVFDIGVSSMQFDEAERGFSFRGDGP 135

Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           LDMRM   G +A+D+VN+A+ + L  IL   GEE+ A RIA AIV  R+ APF +T+ L+
Sbjct: 136 LDMRMEGRGQTAADIVNEADEETLADILYFYGEERAARRIARAIVHDRKLAPFASTRALA 195

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I +     +   IHPAT+SFQALRI VN+E+ EL  GL  AE+AL  GG L VV+FHS
Sbjct: 196 EMIARVAP-GRPGDIHPATKSFQALRIAVNDELGELLDGLAGAERALAEGGRLAVVTFHS 254

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI--TKKVVVPTQEDVAFNRRSRSAK 310
           LEDR+VK+FFA R G+       +P  A P     I   ++ V PT+E+   N R+RSAK
Sbjct: 255 LEDRIVKQFFAERCGRGETGSRRLPGEAAPPPRSFICEGRQPVAPTREETERNPRARSAK 314

Query: 311 LRAGMRTVERSIE-DDSFVHLPRLP 334
           LR   RT   ++  DD    L RLP
Sbjct: 315 LRFATRTAGPALPLDDRLARLARLP 339


>gi|119383335|ref|YP_914391.1| S-adenosyl-methyltransferase MraW [Paracoccus denitrificans PD1222]
 gi|262824738|sp|A1AZK1|RSMH_PARDP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|119373102|gb|ABL68695.1| S-adenosyl-methyltransferase MraW [Paracoccus denitrificans PD1222]
          Length = 322

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 130/321 (40%), Positives = 186/321 (57%), Gaps = 8/321 (2%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQE 76
             H+PVLL  ++  + P      +D TFGAGGY+R   + G+  VI +DRDP      + 
Sbjct: 4   APHIPVLLGPLLRAVAPVE-GTWVDGTFGAGGYARGLLEQGADRVIGIDRDPAVFRMAEA 62

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
              +Y ++  L + TFS L   +    VDGVV DLGVSSMQ+D  +RGFSF + GPLDMR
Sbjct: 63  WAGEYGDRLRLVEGTFSDLDS-LAGGPVDGVVLDLGVSSMQLDQPERGFSFLRDGPLDMR 121

Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
           M   G +A++++N A  + +  +L + GEE+ + RIA AIV  R   P   T  LS ++ 
Sbjct: 122 MGGDGPTAAELLNTAPEQVIADVLYLYGEERASRRIAKAIVAAR---PLSRTGQLSDIVS 178

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
             +   K  + HP+TR+FQA+RI+VN+E  +L  GL +AE+AL+ GG L VVSFHSLEDR
Sbjct: 179 ACLPRPKPGQSHPSTRAFQAIRIWVNDEFGQLVAGLAAAERALRPGGKLAVVSFHSLEDR 238

Query: 257 LVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           +VK+F  +RS          P  A     F    ++ + P + ++A N R+RSA LR G+
Sbjct: 239 IVKRFMQARSNSAGGGSRYAPEAAREEPAFTLPFRRAIGPDEAELATNPRARSALLRVGI 298

Query: 316 RTVERSIE-DDSFVHLPRLPT 335
           RT   +   D + + LP L  
Sbjct: 299 RTEAPAGRVDPAALGLPLLSE 319


>gi|237742793|ref|ZP_04573274.1| S-adenosyl-methyltransferase mraW [Fusobacterium sp. 4_1_13]
 gi|229430441|gb|EEO40653.1| S-adenosyl-methyltransferase mraW [Fusobacterium sp. 4_1_13]
          Length = 314

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 107/308 (34%), Positives = 172/308 (55%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+PVL  + +  L   P  + +D T G G +S    +  S+   +I++D+D  A+   ++
Sbjct: 9   HIPVLYYETLDNLVINPDGIYIDCTLGGGSHSEGILERLSDKGLLISIDQDTNAIEYSKK 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  +  ++ +F+  F  +       GVD   G++ D+GVSS Q+D   RGFS++    L
Sbjct: 69  RLEKFGSKWKVFKGNFENIDTIAYMAGVDKVDGILMDIGVSSKQLDDPKRGFSYRYDVKL 128

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+    ISA DVVN  + + L++I+   GEE+ A +IA  IV+ R+S+P + T DL 
Sbjct: 129 DMRMNTEQKISAYDVVNTYSEEQLSKIIFEYGEERHARKIAKLIVEERKSSPIEKTSDLI 188

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +LI++     +    HPA ++FQA+RI VN E+E L   +  A + LK GG L +++FHS
Sbjct: 189 ALIKRAYP--ERASKHPAKKTFQAIRIEVNRELEVLENAMSKAVELLKVGGRLAIITFHS 246

Query: 253 LEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK  F   +      +   I        F+ ITKK ++P  +++  N RS S+KL
Sbjct: 247 LEDRIVKNKFKDLATACKCPKDIPICVCGGVKKFEIITKKPIIPIDDELKNNNRSHSSKL 306

Query: 312 RAGMRTVE 319
           R   R ++
Sbjct: 307 RILERILD 314


>gi|238918670|ref|YP_002932184.1| S-adenosyl-methyltransferase MraW, [Edwardsiella ictaluri 93-146]
 gi|263447473|sp|C5B9E8|RSMH_EDWI9 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|238868238|gb|ACR67949.1| S-adenosyl-methyltransferase MraW, putative [Edwardsiella ictaluri
           93-146]
          Length = 313

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 123/312 (39%), Positives = 181/312 (58%), Gaps = 19/312 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H  VLL++ +A LN     + +D TFG GG+SR           +IA+DRDP A++    
Sbjct: 7   HKTVLLDEAVAGLNLRSDGIYIDGTFGRGGHSRLILSQLGAEGRLIAIDRDPQAIAAAA- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +    +FS+    FS L DYV + G    +DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 66  --QIDDPRFSIIHGPFSALADYVQEMGLSSRIDGILLDLGVSSPQLDDPERGFSFMRDGP 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G+SA+  + QA   D+  +L   GEE+ A RIA AIV+R ++ P   T++L
Sbjct: 124 LDMRMDPSRGLSAAQWLMQAEEDDIAWVLKTFGEERFAKRIARAIVERNRTEPLSRTREL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           ++LI     F + ++ HPATRSFQA+RI++N+E++E+ + L  A  AL   G L V+SFH
Sbjct: 184 AALISDASPFKEKHK-HPATRSFQAIRIYINSELDEIERALEGALVALAPQGRLSVISFH 242

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNRRS 306
           SLEDRLVK+F    S      + +  + A          +++ K+  +P + +V  N R+
Sbjct: 243 SLEDRLVKRFIRQYSRGPQVPKGLPLTEAQLQAQGGPQLKALGKR--MPGEREVVDNPRA 300

Query: 307 RSAKLRAGMRTV 318
           RS+ LR   R  
Sbjct: 301 RSSVLRVAERIA 312


>gi|227431984|ref|ZP_03914004.1| S-adenosyl-methyltransferase [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
 gi|227352269|gb|EEJ42475.1| S-adenosyl-methyltransferase [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
          Length = 312

 Score =  350 bits (898), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 110/308 (35%), Positives = 167/308 (54%), Gaps = 10/308 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76
           +HV VLL + IALL+  P    +DAT G GG++    K      + + D+D  A+    E
Sbjct: 4   EHVTVLLHEAIALLDIKPEGTYVDATLGGGGHTGEILKQLTTGTLYSFDQDDTAIQYNVE 63

Query: 77  TMRD--YKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
              D     +  +    F  L   + D GV   +G+V+DLGVSS+Q D G RGFS++   
Sbjct: 64  QYADEIAAGKLVIIHKNFRTLTSALADYGVTAVNGIVYDLGVSSVQFDDGQRGFSYKYDA 123

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM     ++A  +VN+    +L R+L   GE++   +IA  I + R++AP  TT +
Sbjct: 124 ELDMRMDQRQALTAKTIVNEWPFNELMRVLSRYGEDRFPKQIARKIEQHRENAPINTTFE 183

Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I++ +   ++    HPA RSFQA RI VN+E+  L   L  A + L   G + V++
Sbjct: 184 LVDIIKEAIPAPARRKGGHPAKRSFQAFRIAVNDELGALEDSLTQALELLATDGKISVIT 243

Query: 250 FHSLEDRLVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           F SLEDRLVK+ F  +S    +     +      A ++S+T+K + P+ E++A N R+ S
Sbjct: 244 FQSLEDRLVKQMFREKSSAPELPAGLPVLPGQFEADYESLTRKPISPSTEEMAINHRAES 303

Query: 309 AKLRAGMR 316
           AKLR   R
Sbjct: 304 AKLRGIRR 311


>gi|319790660|ref|YP_004152293.1| S-adenosyl-methyltransferase MraW [Thermovibrio ammonificans HB-1]
 gi|317115162|gb|ADU97652.1| S-adenosyl-methyltransferase MraW [Thermovibrio ammonificans HB-1]
          Length = 295

 Score =  350 bits (898), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 123/307 (40%), Positives = 183/307 (59%), Gaps = 26/307 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQET 77
           H PVLL++ + +L    G V +DAT G GG++ +  K      VIA+DRD  A+    E 
Sbjct: 6   HPPVLLKESLKVLKAEEGGVFVDATLGGGGHTEAILKAHPENRVIAIDRDEEAIERAMER 65

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++ Y ++ S++ A FSQ+   +  +GV+   GV+FDLGVS   +  G+RGF+  K  PLD
Sbjct: 66  LKPYGDRVSIYHANFSQIDRVLQMEGVERVKGVLFDLGVSHFHL-RGERGFTVWKEQPLD 124

Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM  S  ++A +VVN+ + ++L RI+   GEEK A +IA  IVKRR+  P +TT +L+S
Sbjct: 125 MRMDRSQKLTAKEVVNELSERELARIIFRYGEEKFARKIASEIVKRRKRKPIETTTELAS 184

Query: 194 LIQKTVYFS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           ++++ +        + HPA ++FQA+RI+VN E EE+  G+  A + ++ GG L V++FH
Sbjct: 185 IVEEVIPKKLWAGRKKHPAVKTFQAIRIYVNREFEEIETGIPKAAEFVEPGGRLAVITFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDRLVK    +  G                 F  +TKK +VPT+E+V  N  +RSAKL
Sbjct: 245 SLEDRLVKNILRNLEG-----------------FTPVTKKPIVPTEEEVVENPAARSAKL 287

Query: 312 RAGMRTV 318
           RA  R  
Sbjct: 288 RAAERVR 294


>gi|8134813|sp|P73460|RSMH_SYNY3 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|1652579|dbj|BAA17500.1| sll1144 [Synechocystis sp. PCC 6803]
          Length = 305

 Score =  350 bits (898), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 125/326 (38%), Positives = 179/326 (54%), Gaps = 35/326 (10%)

Query: 1   MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN 60
           ME  + K  + A  H    HV VL   ++  L P PG   LDAT GAGG+S    K+G  
Sbjct: 6   MEGMNLKQTAIADFH----HVSVLPTALVEGLEPKPGGYYLDATVGAGGHSERLLKLGIP 61

Query: 61  V--IALDRDPFAVSCGQETMRDY-KEQ----FSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
           +    +DRD  A++   E ++    ++     + +Q  F+     +     DG++ DLGV
Sbjct: 62  LALTMIDRDVQAIAAAMERLQPLVADRKDISINTWQGNFADFPGQLEQ--FDGIIADLGV 119

Query: 114 SSMQIDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRI 172
           SS Q+D GDRGFSF+ + PLDMRM  S  ++A++++N  + KDL RI    GEE+ + RI
Sbjct: 120 SSPQLDQGDRGFSFRHTAPLDMRMDQSQDLTAAEIINHWSEKDLARIFYEYGEERLSRRI 179

Query: 173 AHAIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQG 231
           A  IV++R   PFQTT DL+  I K V    ++ RIHPATR+FQ LRI VN+E+  L + 
Sbjct: 180 ARQIVEQR---PFQTTTDLAEAITKWVPGKYRHGRIHPATRTFQGLRIAVNDELGSLEKF 236

Query: 232 LRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKK 291
           +  A   LK+GG   ++SFHSLEDR+VK  F                       + +TKK
Sbjct: 237 IAQAPHWLKSGGKFGIISFHSLEDRIVKHRFRETEN-----------------LRVLTKK 279

Query: 292 VVVPTQEDVAFNRRSRSAKLRAGMRT 317
            ++  +E+   N R+RSAKLR   + 
Sbjct: 280 PIIAGEEEQRQNPRARSAKLRWAEKI 305


>gi|302533959|ref|ZP_07286301.1| S-adenosyl-methyltransferase MraW [Streptomyces sp. C]
 gi|302442854|gb|EFL14670.1| S-adenosyl-methyltransferase MraW [Streptomyces sp. C]
          Length = 319

 Score =  350 bits (898), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 118/310 (38%), Positives = 180/310 (58%), Gaps = 10/310 (3%)

Query: 20  HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           HVPV+L++ + LL P    PG V++D T G GG+S +         +I LDRD  A+   
Sbjct: 7   HVPVMLQRCLDLLAPALERPGAVVVDCTLGLGGHSEALLTRFPEARLIGLDRDKEALRLS 66

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            E +  + ++ +L  A ++ L + + + G   V G++FDLGVSSMQ+D  DRGF++ +  
Sbjct: 67  GERLAPFGDRATLVHAIYADLAEVLDNLGLPAVQGILFDLGVSSMQLDEADRGFAYAQDA 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + G+SA++V+N     +L RIL   GEEKQA RI  AIV+ R+  PF  +  
Sbjct: 127 PLDMRMDQTTGVSAAEVLNTYAPGELVRILRQYGEEKQAKRIVSAIVREREKEPFSNSAR 186

Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  LI+  +   +K    +PA R+FQALRI VN E+  L + + +A   +  GG + V+S
Sbjct: 187 LVELIRDALPQAAKRTGGNPAKRTFQALRIEVNGELSGLERAIPAAVDRIAVGGRIAVLS 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           +HSLEDRLVK+ FA+ +         +    +    + +T+   +PT+E++A NRR+  A
Sbjct: 247 YHSLEDRLVKQVFAAGATSTAPPGLPVVPEKYQPKLKLLTRGAELPTEEEIAENRRAAPA 306

Query: 310 KLRAGMRTVE 319
           + R   R  E
Sbjct: 307 RFRGVERIRE 316


>gi|312885181|ref|ZP_07744860.1| S-adenosyl-methyltransferase MraW [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309367121|gb|EFP94694.1| S-adenosyl-methyltransferase MraW [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 316

 Score =  350 bits (898), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 117/313 (37%), Positives = 169/313 (53%), Gaps = 18/313 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H+ VLL + I  L+  P  + +D TFG GG+SR+          + ++DRDP A++  +
Sbjct: 6   KHISVLLNESIDGLSIKPDGIYIDGTFGRGGHSRTILSKLGENGRLFSIDRDPQAIAEAK 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +       +FS+    FS + DY         VDGV+ DLGVSS Q+D  +RGFSF K G
Sbjct: 66  KI---QDPRFSIIHGPFSGIADYAETYDLVGKVDGVLLDLGVSSPQLDDAERGFSFMKDG 122

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---PFQT 187
           PLDMRM  S GI  S  + +A + D+T ++   GE+K A RIA +IV  R++A   P   
Sbjct: 123 PLDMRMDPSSGIPVSQWLLEAELDDITWVIREFGEDKHARRIAKSIVAYRENADNPPLTR 182

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T  L+ LI ++   S   + HPATR+FQA RI++N+E++E+   L+ A   L   G L V
Sbjct: 183 TGQLAKLISESAPKSFKEKKHPATRAFQAFRIYINSELDEIDTALKGAVNILATKGRLSV 242

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT----KKVVVPTQEDVAFN 303
           +SFHSLEDR+VK F    S        +  +        S       K + P+ ++V  N
Sbjct: 243 ISFHSLEDRMVKHFIRKESKGPQVPHGIPLTEEQIQALGSANLKAVGKAIKPSSKEVDEN 302

Query: 304 RRSRSAKLRAGMR 316
            RSRS+ LR   +
Sbjct: 303 TRSRSSVLRIAEK 315


>gi|325283143|ref|YP_004255684.1| Ribosomal RNA small subunit methyltransferase H [Deinococcus
           proteolyticus MRP]
 gi|324314952|gb|ADY26067.1| Ribosomal RNA small subunit methyltransferase H [Deinococcus
           proteolyticus MRP]
          Length = 299

 Score =  350 bits (898), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 124/311 (39%), Positives = 180/311 (57%), Gaps = 24/311 (7%)

Query: 8   TMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRD 67
           T  +  H     H+PVL ++V+  L PAPG++I+D T G  G++R   + G+ VI +D+D
Sbjct: 2   TQEAVPHTPTLSHLPVLPQEVMDALAPAPGRLIVDGTLGGAGHTRMLLERGATVIGIDQD 61

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRG 124
           P+A+S  +    +        +  F  +Q  +   GV   DG++ D+GVSS Q+D  +RG
Sbjct: 62  PYALSRVE---AEGLAGLRTVRGNFRDMQTLLAGIGVTQVDGILLDIGVSSFQLDDVERG 118

Query: 125 FSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           FS+     LDMRMS SG SA+D+VN     +L  ++   GEEK + R+A AIV  RQSAP
Sbjct: 119 FSYHSEAALDMRMSQSGPSAADLVNDLEEAELAALIYEYGEEKHSRRLARAIVAARQSAP 178

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
            +TT +L+ +I++         IHPA R+FQALRI VN+E+  L +GL++AE  L  GG 
Sbjct: 179 IETTTELADIIKRAYP-GFVRGIHPARRTFQALRIAVNDELGALREGLQAAEALLAPGGR 237

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           L V+SFHSLEDR+VK+F                        + +TK+  V ++E+ A N 
Sbjct: 238 LGVISFHSLEDRIVKRFLLGSE-----------------RLRPLTKRPAVASEEEQAANP 280

Query: 305 RSRSAKLRAGM 315
           RSRSAKLR+  
Sbjct: 281 RSRSAKLRSAE 291


>gi|209524297|ref|ZP_03272847.1| S-adenosyl-methyltransferase MraW [Arthrospira maxima CS-328]
 gi|209495388|gb|EDZ95693.1| S-adenosyl-methyltransferase MraW [Arthrospira maxima CS-328]
          Length = 324

 Score =  350 bits (898), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 119/328 (36%), Positives = 169/328 (51%), Gaps = 30/328 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCG--- 74
           H+PVL  ++I  L    G   LDAT G GG++R   +   NV   A+DRD  A++     
Sbjct: 19  HIPVLGRELIEGLAVQEGGHYLDATVGGGGHTRMIFQAAPNVRVTAIDRDLEAIAAAKSM 78

Query: 75  -QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             +T+ +   +   +   FSQ          DG++ DLGV+S Q+D   RGFSF+  GPL
Sbjct: 79  LMDTIGNCGARLKFWHGNFSQYPS--SPSQFDGIIADLGVNSHQLDTPGRGFSFRHCGPL 136

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+    +SA++++N  + K L  I    GEE+ + RIA  IV++R   PFQTT+ L+
Sbjct: 137 DMRMNPQDPLSAAEIINTWDEKQLADIFYTYGEERLSRRIARQIVEKR---PFQTTEHLA 193

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + I   V    +  RIHPATR FQALRI VN E+  L   L +A   LK  G + ++SFH
Sbjct: 194 NAIANCVPSKYRYGRIHPATRVFQALRIAVNGELTALETFLETAPTWLKPRGRIGIISFH 253

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR VK  F                  H  + + +TKK + P  +++  N R+RSAKL
Sbjct: 254 SLEDRPVKHGFR-----------------HHPLLKVLTKKPITPQPDEINQNPRARSAKL 296

Query: 312 RAGMRTVERSIEDDSFVHLPRLPTLSQF 339
           R   R+  +         +P      Q 
Sbjct: 297 RLAERSASQHPRLKHGGFVPPFQVADQL 324


>gi|124003786|ref|ZP_01688634.1| S-adenosyl-methyltransferase MraW [Microscilla marina ATCC 23134]
 gi|123990841|gb|EAY30308.1| S-adenosyl-methyltransferase MraW [Microscilla marina ATCC 23134]
          Length = 303

 Score =  350 bits (898), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 113/304 (37%), Positives = 167/304 (54%), Gaps = 14/304 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H PV+L++ I  L   P  V +D TFG GG+S++  +       + A D+D  A    +E
Sbjct: 5   HQPVMLKECIEGLAINPDGVYVDVTFGGGGHSKAILEQLSEKGKLYAFDQDADAKQEAKE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                   F L +A F  L+ Y+   GV   DG++ DLG+SS QID  +RGFS +    L
Sbjct: 65  I---DHPGFYLIRANFRYLKKYLKMYGVSKVDGILADLGISSHQIDTPERGFSTRFDAYL 121

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRMS S  ++A DVVN+ +  +L +ILG+ GE K A  +A  IV+ RQ A   T ++L 
Sbjct: 122 DMRMSESIEVTAQDVVNEYSESELHKILGMYGELKNAKTVASTIVRARQDAAINTVEELK 181

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           S +++     +        + FQALRI VN EI+ L   L  A + LK  G L+V+S+HS
Sbjct: 182 SAVKRHAPRGRE--FKFFAQVFQALRIEVNEEIQVLEVMLEQAAEVLKPQGRLVVMSYHS 239

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR VK +      +  A + M  +   P   ++I +K++   +E++A N R+RSAKLR
Sbjct: 240 LEDRPVKNYIQKGRFRGEAEKDMFGNVLKP--LRAINRKIITAQEEEIALNNRARSAKLR 297

Query: 313 AGMR 316
              +
Sbjct: 298 IAEK 301


>gi|308177867|ref|YP_003917273.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Arthrobacter arilaitensis Re117]
 gi|307745330|emb|CBT76302.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Arthrobacter arilaitensis Re117]
          Length = 330

 Score =  350 bits (898), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 121/317 (38%), Positives = 185/317 (58%), Gaps = 15/317 (4%)

Query: 20  HVPVLLEKVIALLNP------APGK--VILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69
           HVPVLL++ + LL P      A G+  +++D T G GG+S +  +     ++I LDRD  
Sbjct: 14  HVPVLLDRCVNLLAPGIERANAEGRRAIVVDCTLGMGGHSEAILQRFENLHLIGLDRDEQ 73

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFS 126
           A       +  ++++  L  A + ++ D V D    G+DGV+FDLGVSS+Q+D  +RGF+
Sbjct: 74  AHELAGARLAPFQDRIDLVHAVYDEIADVVEDLGFPGIDGVLFDLGVSSLQLDERERGFA 133

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           +    PLDMRM  S G +A D+VN  +  +L RI+   GEEK A RI+ AIV+ R  +  
Sbjct: 134 YSYDAPLDMRMDTSVGPTAEDLVNDLDRDELLRIIRQWGEEKFAGRISTAIVEARAKSRI 193

Query: 186 QTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
            TT +L  +I+  V  +   N  HPA R+FQALRI VN E++ L + + +A  AL  GG 
Sbjct: 194 STTAELVEVIRSVVPAAAARNHGHPAKRTFQALRIAVNEELDVLERAIPAAMGALNIGGR 253

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           ++V+S+HSLED++ K+ F   S         +    H A ++ +TK    P++ ++A N 
Sbjct: 254 VVVMSYHSLEDKITKRHFVQGSTSSAPPGFPVELEEHKAEYKVLTKGTEKPSEHEIAENS 313

Query: 305 RSRSAKLRAGMRTVERS 321
           R+ SA+LRA  R ++RS
Sbjct: 314 RAASARLRAVERVLKRS 330


>gi|294784753|ref|ZP_06750041.1| S-adenosyl-methyltransferase MraW [Fusobacterium sp. 3_1_27]
 gi|294486467|gb|EFG33829.1| S-adenosyl-methyltransferase MraW [Fusobacterium sp. 3_1_27]
          Length = 314

 Score =  350 bits (898), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 106/308 (34%), Positives = 172/308 (55%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+PVL  + +  L   P  + +D T G G +S    +  S+   +I++D+D  A+   ++
Sbjct: 9   HIPVLYYETLDNLVINPDGIYIDCTLGGGSHSEGILERLSDKGLLISIDQDTNAIEYSKK 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  +  ++ +F+  F  +       GVD   G++ D+GVSS Q+D   RGFS++    L
Sbjct: 69  RLEKFGSKWKVFKGNFENIDTIAYMAGVDKVDGILMDIGVSSKQLDDPKRGFSYRYDVKL 128

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+    ISA DVVN  + + L++I+   GEE+ A +IA  IV+ R+S+P + T DL 
Sbjct: 129 DMRMNTEQKISAYDVVNTYSEEQLSKIIFEYGEERHARKIAKLIVEERKSSPIEKTSDLI 188

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +LI++     +    HPA ++FQA+RI VN E+E L   +  A + LK GG L +++FHS
Sbjct: 189 ALIKRAYP--ERASKHPAKKTFQAIRIEVNRELEVLENAMSKAVELLKVGGRLAIITFHS 246

Query: 253 LEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK  F   +      +   I        F+ ITKK ++P  +++  N R+ S+KL
Sbjct: 247 LEDRIVKNKFKDLATACKCPKDIPICVCGGVKKFEIITKKPIIPIDDELKNNNRAHSSKL 306

Query: 312 RAGMRTVE 319
           R   R ++
Sbjct: 307 RILERILD 314


>gi|325202777|gb|ADY98231.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis
           M01-240149]
          Length = 316

 Score =  350 bits (898), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 112/308 (36%), Positives = 167/308 (54%), Gaps = 10/308 (3%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRD 80
           +L + +  L      V +D TFG GG+SR           +I  D+DP A++  +E +  
Sbjct: 1   MLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFDKDPQAIAVAEE-LAR 59

Query: 81  YKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
             ++  +    F+  Q  +   G   VDG +FDLG+SS QID G RGFSF+   PLDMRM
Sbjct: 60  SDKRVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGSRGFSFRFDAPLDMRM 119

Query: 138 SCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
             + G+SA++ +  A+ +DL  ++   GEE+ + +IA AIV +R  +P  TT+ L+ ++ 
Sbjct: 120 DTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRAESPIDTTRKLAQIVA 179

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
           + V   +  +  PATR+FQA+RIF+N E+EE+   L      LK GG L V++FHSLEDR
Sbjct: 180 QNVRTRERGQ-DPATRTFQAIRIFINRELEEVGAVLPQVMCRLKEGGRLAVIAFHSLEDR 238

Query: 257 LVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           +VK+F    S      R      A  P     I  + + P + ++A N R+RSA LR   
Sbjct: 239 IVKQFVKKYSQHAPLPRWAAVREADLPEPPLKIAGRALKPGEAEIAANPRARSAVLRVAE 298

Query: 316 RTVERSIE 323
           RT     E
Sbjct: 299 RTAGPIPE 306


>gi|239978979|ref|ZP_04701503.1| putative S-adenosylmethionine-dependent methyltransferase
           [Streptomyces albus J1074]
          Length = 343

 Score =  350 bits (898), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 125/328 (38%), Positives = 183/328 (55%), Gaps = 10/328 (3%)

Query: 6   CKTMSSAIHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--N 60
               ++A       HVPV+L + + LL PA   PG V++D T G GG+S +         
Sbjct: 16  AGHQAAAPEDGNTRHVPVMLRRCLDLLAPALAEPGAVVVDCTLGLGGHSEALLATFPAAR 75

Query: 61  VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQ 117
           ++ALDRD  A+    E +  + ++ +L  A + +L + +   G   V GV+FDLGVSSMQ
Sbjct: 76  LVALDRDKEALRLSGERLARHGDRATLVHAVYDELPEVLDRLGIPRVQGVLFDLGVSSMQ 135

Query: 118 IDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
           +D   RGF++ +  PLDMRM  + GISA++V+N     DL RIL   GEEKQA RI  A+
Sbjct: 136 LDEAGRGFAYAQDAPLDMRMDQTTGISAAEVLNTYAPGDLVRILRAYGEEKQARRIVSAV 195

Query: 177 VKRRQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           V  R   PF T+  L  +I+  +   +K    +PA R+FQALRI VN E+  L + + +A
Sbjct: 196 VDERAKEPFTTSARLVEVIRDALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAA 255

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295
             +L  GG L V+S+HSLEDRLVK+  A+ +         +    +    + +T+   +P
Sbjct: 256 VASLAVGGRLAVLSYHSLEDRLVKQVLAAGAASTAPPGLPVVPERYQPRLKLLTRGAELP 315

Query: 296 TQEDVAFNRRSRSAKLRAGMRTVERSIE 323
           T+E+VA NRR+  A+LR   R  E   E
Sbjct: 316 TEEEVAENRRAAPARLRGAQRIREEHQE 343


>gi|254451868|ref|ZP_05065305.1| S-adenosyl-methyltransferase MraW [Octadecabacter antarcticus 238]
 gi|198266274|gb|EDY90544.1| S-adenosyl-methyltransferase MraW [Octadecabacter antarcticus 238]
          Length = 325

 Score =  349 bits (897), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 144/322 (44%), Positives = 189/322 (58%), Gaps = 8/322 (2%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSC 73
                H+PVL+  +IA  +P      LD TFG GGY++     G+N VI +DRDP     
Sbjct: 5   DDTAPHIPVLIGPLIAACSPIS-GTWLDGTFGVGGYTQRLLDAGANKVIGVDRDPAVFKM 63

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            Q  + +      L + TFS L     D  +DG+V DLGVSSMQID  +RGFSF + GPL
Sbjct: 64  AQWAVDNPA--VELVEDTFSNLDAVASD--LDGIVLDLGVSSMQIDQAERGFSFMRDGPL 119

Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           DMRM   G SA+D+VN+ +  DL  IL   GEE+ + RIA  IV++R   P  TT  L+ 
Sbjct: 120 DMRMGQEGRSAADIVNETDETDLADILYTYGEERASRRIARKIVEQRDREPITTTLRLAK 179

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           LI+  +  SK  + HPATRSFQA+RI VN+E  +LA+GL +AE+ALK GG L VV+FHS+
Sbjct: 180 LIEGCLPRSKQGQSHPATRSFQAIRIAVNDEYGQLAEGLEAAERALKTGGYLAVVTFHSV 239

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPS-NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           EDR+VK+F   R G +       P        F+ +TKK      ++VA N RSRSAKLR
Sbjct: 240 EDRMVKRFLQQRGGGMGNANRYSPVLETEKPAFEIVTKKARAADDDEVAQNPRSRSAKLR 299

Query: 313 AGMRTVERSIE-DDSFVHLPRL 333
              RT   S   D S + +P+L
Sbjct: 300 VARRTDAPSGSVDRSKLGMPQL 321


>gi|237654092|ref|YP_002890406.1| S-adenosyl-methyltransferase MraW [Thauera sp. MZ1T]
 gi|237625339|gb|ACR02029.1| S-adenosyl-methyltransferase MraW [Thauera sp. MZ1T]
          Length = 311

 Score =  349 bits (897), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 123/309 (39%), Positives = 173/309 (55%), Gaps = 12/309 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           HV VLL + +  L        +D TFG GG+SR+  +       +IA DRDP A++ GQ 
Sbjct: 7   HVSVLLSEAVDALAIRADGFYVDGTFGRGGHSRAVLQRLGPQGRLIAFDRDPLAIAAGQ- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  + +L  + FS L D +   GV   DGV+ DLGVSS Q+D   RG SF+   PL
Sbjct: 66  --GVGDARLTLVHSAFSALDDELARLGVQAVDGVLLDLGVSSPQLDDAARGMSFRFDAPL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  S G + ++ + +A+V  +T ++   GEE+ A  IA AI   R      TT  L+
Sbjct: 124 DMRMDTSRGQTVAEWLAEASVGQITEVIREYGEERFAHAIAKAIANARAGGAVATTGQLA 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +L++K V   +  + HPATR+FQALRIF+N E+EEL++ L      L+ GG L V+SFHS
Sbjct: 184 ALVEKAVRTREPGQ-HPATRTFQALRIFINQELEELSRVLPVCVSRLRPGGRLAVISFHS 242

Query: 253 LEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK+F    S   V+  R  + +   PA    +  K + P++ +VA N R+RSA L
Sbjct: 243 LEDRIVKRFMRDESRPPVLPRRLPVRAADLPAPRLQLVGKAMRPSEAEVAANPRARSAVL 302

Query: 312 RAGMRTVER 320
           R   RT   
Sbjct: 303 RVAERTEAP 311


>gi|316984918|gb|EFV63874.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis H44/76]
 gi|325199600|gb|ADY95055.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis H44/76]
          Length = 316

 Score =  349 bits (897), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 113/308 (36%), Positives = 168/308 (54%), Gaps = 10/308 (3%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRD 80
           +L + +  L      V +D TFG GG+SR           +I  D+DP A++  +E +  
Sbjct: 1   MLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFDKDPQAIAVAEE-LAR 59

Query: 81  YKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
             ++  +    F+  Q  +   G   VDG +FDLG+SS QID G RGFSF+   PLDMRM
Sbjct: 60  SDKRVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGSRGFSFRFDAPLDMRM 119

Query: 138 SCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
             + G+SA++ +  A+ +DL  ++   GEE+ + RIA AIV +R  +P  TT+ L+ ++ 
Sbjct: 120 DTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRRIARAIVAQRAESPIDTTRKLAQIVA 179

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
           + V   +  +  PATR+FQA+RIF+N E+EE+   L      LK GG L V++FHSLEDR
Sbjct: 180 QNVRTRERGQ-DPATRTFQAVRIFINRELEEVGAVLPQVMCRLKEGGRLAVIAFHSLEDR 238

Query: 257 LVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           +VK+F    S      R      A  P +   I  + + P + ++A N R+RSA LR   
Sbjct: 239 IVKQFVKKYSQHAPLPRWAAVREADLPELPLKIVGRALKPGEAEIAANPRARSAVLRVAE 298

Query: 316 RTVERSIE 323
           RT     E
Sbjct: 299 RTAGPIPE 306


>gi|34763068|ref|ZP_00144041.1| S-adenosyl-methyltransferase mraW [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|27887267|gb|EAA24365.1| S-adenosyl-methyltransferase mraW [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
          Length = 331

 Score =  349 bits (897), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 108/325 (33%), Positives = 177/325 (54%), Gaps = 13/325 (4%)

Query: 3   SKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-- 60
            K+ + M    +     H+PVL  + +  L   P  + +D T G G +S    +  S+  
Sbjct: 12  RKNGEFMEKIGND---YHIPVLYYETLDNLVINPDGIYIDCTLGGGSHSEGILERLSDKG 68

Query: 61  -VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSM 116
            +I++D+D  A+   ++ +  +  ++ +F+  F  +       GVD   G++ D+GVSS 
Sbjct: 69  LLISIDQDTNAIEYSKKRLEKFGSKWKVFKGNFENIDTIAYMAGVDKVDGILMDIGVSSK 128

Query: 117 QIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175
           Q+D   RGFS++    LDMRM+    ISA DVVN  + + L++I+   GEE+ A +IA  
Sbjct: 129 QLDDPKRGFSYRYDVKLDMRMNIEQKISAYDVVNTYSEEQLSKIIFEYGEERHARKIAKL 188

Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           IV+ R+S+P + T DL +LI++     +    HPA ++FQA+RI VN E+E L   +  A
Sbjct: 189 IVEERKSSPIEKTSDLIALIKRAYP--ERASKHPAKKTFQAIRIEVNRELEVLENAMSKA 246

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVV 294
            + LK GG L +++FHSLEDR+VK  F   +      +   I        F+ ITKK ++
Sbjct: 247 VELLKVGGRLAIITFHSLEDRIVKNKFKDLATACKCPKDIPICVCGGVKKFEIITKKPII 306

Query: 295 PTQEDVAFNRRSRSAKLRAGMRTVE 319
           P  +++  N R+ S+KLR   R ++
Sbjct: 307 PIDDELKNNNRAHSSKLRILERILD 331


>gi|291440170|ref|ZP_06579560.1| S-adenosylmethionine-dependent methyltransferase [Streptomyces
           ghanaensis ATCC 14672]
 gi|291343065|gb|EFE70021.1| S-adenosylmethionine-dependent methyltransferase [Streptomyces
           ghanaensis ATCC 14672]
          Length = 318

 Score =  349 bits (897), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 124/310 (40%), Positives = 183/310 (59%), Gaps = 10/310 (3%)

Query: 20  HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           HVPV+L++ + LL P    PG V++D T G GG+S +  +      ++ALDRD  A+   
Sbjct: 6   HVPVMLQRCLDLLAPALERPGAVVVDCTLGLGGHSEALLRRFPEARLVALDRDKEALRLS 65

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            E +  + E+ +L  A + +L D +   GV    GV+FDLGVSSMQ+D  DRGF++ +  
Sbjct: 66  GERLAPFGERATLVHAVYDELPDVLARLGVPRVQGVLFDLGVSSMQLDEADRGFAYAQDA 125

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + G+SA++V+N     +L RIL   GEEKQA RI  AIV+ R+  PF  +  
Sbjct: 126 PLDMRMDQTAGVSAAEVLNTYPPGELVRILRAYGEEKQAKRIVAAIVREREKEPFTRSAR 185

Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  LI+  +   +K    +PA R+FQALRI VN E+  L + + +A KAL   G + V+S
Sbjct: 186 LVELIRDALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVKALDVDGRIAVLS 245

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           +HSLEDRLVK+ FA+ +         +    +    + +T+   +PT+E++A NRR+  A
Sbjct: 246 YHSLEDRLVKQVFAAGAATTAPPGLPVVPERYQPRLKLLTRGAELPTEEEIAENRRAAPA 305

Query: 310 KLRAGMRTVE 319
           +LR   R  E
Sbjct: 306 RLRGAQRIRE 315


>gi|256821906|ref|YP_003145869.1| S-adenosyl-methyltransferase MraW [Kangiella koreensis DSM 16069]
 gi|256795445|gb|ACV26101.1| S-adenosyl-methyltransferase MraW [Kangiella koreensis DSM 16069]
          Length = 311

 Score =  349 bits (897), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 110/311 (35%), Positives = 168/311 (54%), Gaps = 12/311 (3%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAV 71
            T  +H  VLLE+ +  L   P  + +D TFG GG+SR+          +I  D+D  A+
Sbjct: 2   STKQEHDAVLLEEAVEALVIDPNGIYIDCTFGRGGHSRAILSHLSEEGRLIGFDKDLQAI 61

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSF 127
           + G E ++    +F++   +FS L+  V  +G    V GV+ DLGVSS Q+D  +RGFSF
Sbjct: 62  AVG-EQLQQEDARFNIVHESFSLLEQEVSKRGWVGEVTGVLMDLGVSSPQLDQAERGFSF 120

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
            + GPLDMRM  + G +A   +   + +D+       GEE+ A RIA AIV++R  AP  
Sbjct: 121 MQDGPLDMRMDTTRGQTAEQWIANTDEEDMVWAFKAFGEERYAKRIARAIVEKRAKAPIT 180

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
            T+ L+ +I +     + ++ HPATR FQA+RI VN E+++L   L      LK GG L+
Sbjct: 181 RTKQLADIISEAHPRWEKHK-HPATRCFQAIRIAVNRELDDLKDTLEQVLNVLKVGGRLV 239

Query: 247 VVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
            +SFHSLEDR+VK+F   ++ G+       I  +      + +  K       ++  N R
Sbjct: 240 AISFHSLEDRIVKQFIQKQAQGQNFPAGLPITEDMINRRMKKV-GKFTKAGDSELERNIR 298

Query: 306 SRSAKLRAGMR 316
           +RSA +R   +
Sbjct: 299 ARSAVMRVAEK 309


>gi|256425920|ref|YP_003126573.1| S-adenosyl-methyltransferase MraW [Chitinophaga pinensis DSM 2588]
 gi|256040828|gb|ACU64372.1| S-adenosyl-methyltransferase MraW [Chitinophaga pinensis DSM 2588]
          Length = 302

 Score =  349 bits (897), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 112/312 (35%), Positives = 163/312 (52%), Gaps = 17/312 (5%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69
           +      H+PVLL++VI  L   P  V +DATFG GG+SR+  +       +I  D+D  
Sbjct: 1   MEEASAYHLPVLLQEVITNLQIQPDGVYVDATFGGGGHSRAILEKLNENGRLIVFDQDED 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFS 126
           A +      R    + +  Q  F  LQ ++       VDG++ DLGVSS Q D  +RGFS
Sbjct: 61  AYNN-----RIDDPRVTFVQQNFRHLQRFLRLYKSVPVDGILADLGVSSWQFDTAERGFS 115

Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
            +  G LDMRM   + ++A+ ++  +  K+L  +    GE   A  +A  IV+ R++ P 
Sbjct: 116 TRFDGDLDMRMDKRNALTAASLLQSSTEKELHLLFQNYGEVTNARTLAKTIVQERKARPM 175

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           +T  +  S+IQ  V   K N      + FQALRI VN+E   L   L  + + LK GG L
Sbjct: 176 RTINEFKSVIQPIV---KGNPQKYLAQVFQALRIVVNDEFGALKDMLNQSAEVLKPGGKL 232

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
            +++FHSLEDRLVK F    +G+  A          P +F+ +TKK V  + E++  N R
Sbjct: 233 AIITFHSLEDRLVKNFMK--TGQFEAQEDTFSYETPPKLFRLVTKKPVTASPEELKRNTR 290

Query: 306 SRSAKLRAGMRT 317
           SRSAKLR   + 
Sbjct: 291 SRSAKLRVAEKI 302


>gi|269215884|ref|ZP_06159738.1| S-adenosyl-methyltransferase MraW [Slackia exigua ATCC 700122]
 gi|269130834|gb|EEZ61910.1| S-adenosyl-methyltransferase MraW [Slackia exigua ATCC 700122]
          Length = 318

 Score =  349 bits (897), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 113/311 (36%), Positives = 170/311 (54%), Gaps = 14/311 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRS---FCKMGSNVIALDRDPFAVSCGQE 76
           H PVLL + +  L   P  + +DAT G  G+S            +I +D+D  A++   E
Sbjct: 7   HTPVLLAECLEGLALKPRHIFVDATLGGAGHSCEAAGRLGADGLLIGIDQDDAALAAAGE 66

Query: 77  TMRDYKE----QFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
            +R   E    +  L +  F  L + +      G+DG++FDLGVSS Q+D   RGFSF++
Sbjct: 67  RLRALPEKKRPRIKLLKGNFGDLDELLVRAQVPGIDGILFDLGVSSPQLDVASRGFSFRE 126

Query: 130 SGPLDMRMSCSGIS--ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
             PLDMRM     +  A+++VN A   +L RI+    +EK A RIA  IV  R+ AP +T
Sbjct: 127 DAPLDMRMDPGRQTRNAAELVNSATESELARIIFENSDEKWARRIAQFIVAAREDAPIET 186

Query: 188 TQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T  L  +I+  +   ++    HPA R+FQALRI VN+E++ L +GL +A + L   G + 
Sbjct: 187 TGQLVEIIKAAIPASARRRGGHPAKRTFQALRIEVNSELDALKRGLEAAVRWLNPQGRIA 246

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           V+S+HSLEDR+VK  FA  S   +      +       V + +T+K ++P + ++  N R
Sbjct: 247 VISYHSLEDRIVKNLFADLSRTCICPPDLPVCVCGADPVLKVMTRKPLLPAEGEIEGNPR 306

Query: 306 SRSAKLRAGMR 316
           +RSAKLR   R
Sbjct: 307 ARSAKLRIACR 317


>gi|77408183|ref|ZP_00784928.1| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae COH1]
 gi|77173198|gb|EAO76322.1| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae COH1]
          Length = 298

 Score =  349 bits (897), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 96/298 (32%), Positives = 155/298 (52%), Gaps = 10/298 (3%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDYKE--QF 85
           +L+  P    +DAT G  G+S           ++ A D+D  A+      ++ Y +  Q 
Sbjct: 1   MLDIKPDGTYVDATLGGAGHSEYLLSQLGPDGHLYAFDQDQKAIDIAHIRLKKYVDTGQV 60

Query: 86  SLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-G 141
           +  +  F  L   +   GV   +G+ +DLGVSS Q+D  +RGFS+++  PLDMRM+    
Sbjct: 61  TFIKDNFRNLSSNLKALGVSEINGICYDLGVSSPQLDERERGFSYKQDAPLDMRMNREQS 120

Query: 142 ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYF 201
           ++A DVVN  +  DL RI    GE+K + +IA  I + R   P  TT +L+ +I+ +   
Sbjct: 121 LTAYDVVNTYSYHDLVRIFFKYGEDKFSKQIARKIEQVRAEKPISTTTELAEIIKSSKSA 180

Query: 202 SK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKK 260
            +   + HPA + FQA+RI VN+E+    + ++ A   L   G + V++FHSLEDRL K+
Sbjct: 181 KELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDLLAVDGRISVITFHSLEDRLTKQ 240

Query: 261 FFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318
            F   S   +        +      + + +K ++P+QE++  N R+ SAKLR   R  
Sbjct: 241 LFKEASTVEVPKGLPFIPDDLQPKMELVNRKPILPSQEELEANNRAHSAKLRVARRIR 298


>gi|29832656|ref|NP_827290.1| S-adenosylmethionine-dependent methyltransferase [Streptomyces
           avermitilis MA-4680]
 gi|42559459|sp|Q82AE4|RSMH_STRAW RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|29609776|dbj|BAC73825.1| putative S-adenosylmethionine-dependent methyltransferase
           [Streptomyces avermitilis MA-4680]
          Length = 318

 Score =  349 bits (897), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 124/312 (39%), Positives = 186/312 (59%), Gaps = 10/312 (3%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           HVPV+L++ + +L PA   PG V++D T G GG+S +         ++ALDRD  A+   
Sbjct: 6   HVPVMLQRCLDMLAPALTEPGAVVVDCTLGLGGHSEALLTQFPEARLVALDRDKEALRLS 65

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            E +  + ++ +L  A + +L D +   GV    GV+FDLGVSSMQ+D  DRGF++ +  
Sbjct: 66  GERLAPFGDRATLVHAVYDELPDVLDRLGVPRVQGVLFDLGVSSMQLDEADRGFAYAQDA 125

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + GISA++V+N     ++ RIL   GEEKQA RI  AIV+ R+  PF  +  
Sbjct: 126 PLDMRMDQTTGISAAEVLNTYPPGEIVRILRAYGEEKQAKRIVSAIVREREKEPFSNSAR 185

Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  LI+ ++   +K    +PA R+FQALRI VN E+  L + + +A KAL  GG + V+S
Sbjct: 186 LVELIRDSLPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVKALAVGGRIAVLS 245

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           +HSLEDRLVK+ FA+ +         +    +    + +T+   +PT+E++A NRR+  A
Sbjct: 246 YHSLEDRLVKQVFAAGAATTAPPGLPVVPERYQPRLKLLTRGAELPTEEEIAENRRAAPA 305

Query: 310 KLRAGMRTVERS 321
           +LR   R  E +
Sbjct: 306 RLRGAQRIREDA 317


>gi|82703617|ref|YP_413183.1| methyltransferase [Nitrosospira multiformis ATCC 25196]
 gi|123543903|sp|Q2Y630|RSMH_NITMU RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|82411682|gb|ABB75791.1| methyltransferase [Nitrosospira multiformis ATCC 25196]
          Length = 316

 Score =  349 bits (897), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 113/315 (35%), Positives = 170/315 (53%), Gaps = 17/315 (5%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72
             G H  VLL++ +  L   P  + +D TFG GG+SR   +       +IA DRDP A +
Sbjct: 3   EAGKHTTVLLQEAVEALALKPDGIYVDGTFGRGGHSRLILERLGKNGRLIAFDRDPVACA 62

Query: 73  CGQETMRDYKE-QFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQ 128
            G    R + + +F +  +++S+LQ+ +    +   DGV+ DLGVSS Q++   RGFSF 
Sbjct: 63  VG----RSFGDERFCMVHSSYSRLQEVLRQLNIGQIDGVLLDLGVSSPQLEEATRGFSFS 118

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
             GPLDMRM  + G +A+  +  A+   L  ++   GEE+ A +IA AIVK R   P  T
Sbjct: 119 MEGPLDMRMDTTEGQTAAQWLASASEVQLEEVIKEYGEERFAKQIARAIVKARARQPLVT 178

Query: 188 TQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T  L++++   +       + +PATR+FQA+RI++N E+E L+  L    + LK GG L+
Sbjct: 179 TSQLAAIVAAAIPARAREPKQNPATRTFQAIRIYLNQELERLSLALPQCVEMLKTGGRLV 238

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS----ITKKVVVPTQEDVAF 302
           V+SFHSLEDR+VK+F    +      +H+         F      +  K V P   +V  
Sbjct: 239 VISFHSLEDRIVKRFIREGANTDKLPKHLPLRADEVRRFSRASLQMVGKAVRPGVAEVEC 298

Query: 303 NRRSRSAKLRAGMRT 317
           N R+RSA +R   R 
Sbjct: 299 NPRARSAVMRVAERI 313


>gi|85373178|ref|YP_457240.1| S-adenosyl-methyltransferase MraW [Erythrobacter litoralis
           HTCC2594]
 gi|122545211|sp|Q2NCZ8|RSMH_ERYLH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|84786261|gb|ABC62443.1| S-adenosyl-methyltransferase [Erythrobacter litoralis HTCC2594]
          Length = 315

 Score =  349 bits (897), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 137/313 (43%), Positives = 201/313 (64%), Gaps = 10/313 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET-- 77
           HVPVLL++V+A L+P PG V++DATFGAGGY+R+    G+ V A DRDP A++ G +   
Sbjct: 7   HVPVLLDEVVAALDPQPGDVLVDATFGAGGYTRALLDSGATVHAFDRDPDAIAAGSQWPE 66

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
            ++   +  L    FS++   + + GV   DGV  D+GVSSMQ+D   RGF+F   GPLD
Sbjct: 67  TKEEPPRLVLHPRRFSEMVHALAEAGVAQVDGVAMDIGVSSMQLDQAQRGFAFSADGPLD 126

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRMS  G SA+D +N A  +++  +L   GEE+Q+ R+A AI+  R   P +TT DL+ +
Sbjct: 127 MRMSQHGPSAADFLNSAEAEEIADVLYQYGEERQSRRVARAIIAAR---PLETTGDLARV 183

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           ++K + +       PATR+FQA+RI VN E++EL +GL +AE  L++GG L VVSFHSLE
Sbjct: 184 VRKALGYRVGAPKDPATRTFQAVRIHVNGELDELREGLHAAEHLLRSGGRLAVVSFHSLE 243

Query: 255 DRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           DR+VK+F  S SGK       +P ++  PA+F  I+ K + P++ ++A N R+RS+ LR 
Sbjct: 244 DRIVKRFLQSASGKAGGTSRYLPQTDVSPAIFSDIS-KAIRPSEAEIARNPRARSSTLRH 302

Query: 314 GMRTVERSIEDDS 326
             RT     ++ +
Sbjct: 303 ATRTDAPPRKEAA 315


>gi|285019581|ref|YP_003377292.1| S-adenosyl-methyltransferase [Xanthomonas albilineans GPE PC73]
 gi|283474799|emb|CBA17298.1| putative s-adenosyl-methyltransferase protein [Xanthomonas
           albilineans]
          Length = 333

 Score =  349 bits (897), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 116/311 (37%), Positives = 172/311 (55%), Gaps = 7/311 (2%)

Query: 12  AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDP 68
           A+ +    HVPVL  +V+  L      + LD TFG GG++R        G  ++ +D+DP
Sbjct: 11  AVSYPSAAHVPVLFAQVMDGLQVIENGIYLDGTFGRGGHARGVLHKLGPGGRLLVMDKDP 70

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
            A++   E       + S+ + +F+ L  +     +DGV+FDLGVSS Q+D  +RGFSF 
Sbjct: 71  EAIAEA-EHAFGGDARVSIRRGSFADLGHWDAATALDGVLFDLGVSSPQLDVAERGFSFG 129

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           K GPLDMRM   +G SA+  + +A+ +++  +L   GEE+Q+ RIA AIV RR   P   
Sbjct: 130 KDGPLDMRMDPHAGESAAQWLARADEREIADVLWHYGEERQSRRIARAIVARRAEQPLTR 189

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T  L+ LI   +    +++ HPATRSFQA+RI  N E+ +L  GL +A   LK GG L V
Sbjct: 190 TAQLAELIATVMPRG-DSKTHPATRSFQAIRIHTNRELADLESGLDAALARLKPGGRLAV 248

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +SFHSLEDR+VK F    +    + R +  +       + +    +    E++A N R+R
Sbjct: 249 ISFHSLEDRIVKHFMQRHAKAPPSNRRLPEAQTFVPALR-LHGGAIKADAEELAGNPRAR 307

Query: 308 SAKLRAGMRTV 318
           SA LR   +  
Sbjct: 308 SAVLRVAEKLA 318


>gi|291450857|ref|ZP_06590247.1| S-adenosylmethionine-dependent methyltransferase [Streptomyces
           albus J1074]
 gi|291353806|gb|EFE80708.1| S-adenosylmethionine-dependent methyltransferase [Streptomyces
           albus J1074]
          Length = 341

 Score =  349 bits (897), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 125/328 (38%), Positives = 183/328 (55%), Gaps = 10/328 (3%)

Query: 6   CKTMSSAIHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--N 60
               ++A       HVPV+L + + LL PA   PG V++D T G GG+S +         
Sbjct: 14  AGHQAAAPEDGNTRHVPVMLRRCLDLLAPALAEPGAVVVDCTLGLGGHSEALLATFPAAR 73

Query: 61  VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQ 117
           ++ALDRD  A+    E +  + ++ +L  A + +L + +   G   V GV+FDLGVSSMQ
Sbjct: 74  LVALDRDKEALRLSGERLARHGDRATLVHAVYDELPEVLDRLGIPRVQGVLFDLGVSSMQ 133

Query: 118 IDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
           +D   RGF++ +  PLDMRM  + GISA++V+N     DL RIL   GEEKQA RI  A+
Sbjct: 134 LDEAGRGFAYAQDAPLDMRMDQTTGISAAEVLNTYAPGDLVRILRAYGEEKQARRIVSAV 193

Query: 177 VKRRQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           V  R   PF T+  L  +I+  +   +K    +PA R+FQALRI VN E+  L + + +A
Sbjct: 194 VDERAKEPFTTSARLVEVIRDALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAA 253

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295
             +L  GG L V+S+HSLEDRLVK+  A+ +         +    +    + +T+   +P
Sbjct: 254 VASLAVGGRLAVLSYHSLEDRLVKQVLAAGAASTAPPGLPVVPERYQPRLKLLTRGAELP 313

Query: 296 TQEDVAFNRRSRSAKLRAGMRTVERSIE 323
           T+E+VA NRR+  A+LR   R  E   E
Sbjct: 314 TEEEVAENRRAAPARLRGAQRIREEHQE 341


>gi|224368376|ref|YP_002602539.1| S-adenosyl-methyltransferase MraW [Desulfobacterium autotrophicum
           HRM2]
 gi|263447343|sp|C0Q8N5|RSMH_DESAH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|223691092|gb|ACN14375.1| MraW [Desulfobacterium autotrophicum HRM2]
          Length = 312

 Score =  349 bits (896), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 110/309 (35%), Positives = 164/309 (53%), Gaps = 10/309 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGY---SRSFCKMGSNVIALDRDPFAVSCGQ 75
           +H  V+  +V   L+  PG+  +D T G  G+   S +       +I +D+D  A+    
Sbjct: 4   EHRSVMPREVRDGLDLKPGETCVDCTLGGSGHAVTSLAAVLPNGRLIGIDQDLDAIENAH 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
               D     S+F   FS L   +     KGVDG++ DLG+S  Q+  G RGFSF+   P
Sbjct: 64  RVFADDMANVSIFHDNFSHLPAILDSLGIKGVDGILLDLGLSLHQLRKGQRGFSFKGDEP 123

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM   + ++A+D+VN    + L  I    GEEK + +IA AIV++R SAP     +L
Sbjct: 124 LDMRMDMRTALTAADLVNTLEERALVDIFFKYGEEKMSRKIARAIVRQRASAPITRNCEL 183

Query: 192 SSLIQKTVYFS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           + +++  +        +IHPATR FQALRI VN E+E+L + L +    L  GG + ++S
Sbjct: 184 AEIVRAAIPAKIVHQQKIHPATRVFQALRISVNRELEQLERFLETFVDFLNPGGRICIIS 243

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK+ F +        R             +S+TK+ V+PT E++  N  +RS
Sbjct: 244 FHSLEDRMVKRRFRALEQGCTCPRDFPECVCGFKPRLKSVTKRAVMPTPEEIEINPMARS 303

Query: 309 AKLRAGMRT 317
           A+LR   R 
Sbjct: 304 ARLRVAWRV 312


>gi|325203518|gb|ADY98971.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis
           M01-240355]
          Length = 316

 Score =  349 bits (896), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 112/308 (36%), Positives = 167/308 (54%), Gaps = 10/308 (3%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRD 80
           +L + +  L      V +D TFG GG+SR           +I  D+DP A++  +E +  
Sbjct: 1   MLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFDKDPQAIAVAEE-LAR 59

Query: 81  YKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
             ++  +    F+  Q  +   G   VDG +FDLG+SS QID G RGFSF+   PLDMRM
Sbjct: 60  SDKRVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGSRGFSFRFDAPLDMRM 119

Query: 138 SCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
             + G+SA++ +  A+ +DL  ++   GEE+ + +IA AIV +R  +P  TT+ L+ ++ 
Sbjct: 120 DTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRAESPIDTTRKLAQIVA 179

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
           + V   +  +  PATR+FQA+RIF+N E+EE+   L      LK GG L V++FHSLEDR
Sbjct: 180 QNVRTRERGQ-DPATRTFQAVRIFINRELEEVGAVLPQVMCRLKEGGRLAVIAFHSLEDR 238

Query: 257 LVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           +VK+F    S      R      A  P     I  + + P + ++A N R+RSA LR   
Sbjct: 239 IVKQFVKKYSQHAPLPRWAAVREADLPEPPLKIAGRALKPGEAEIAANPRARSAVLRVAE 298

Query: 316 RTVERSIE 323
           RT     E
Sbjct: 299 RTAGPIPE 306


>gi|254281944|ref|ZP_04956912.1| S-adenosyl-methyltransferase MraW [gamma proteobacterium NOR51-B]
 gi|219678147|gb|EED34496.1| S-adenosyl-methyltransferase MraW [gamma proteobacterium NOR51-B]
          Length = 306

 Score =  349 bits (896), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 117/304 (38%), Positives = 172/304 (56%), Gaps = 7/304 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H  VLLE+ +  L        +D T+G GG+SR           +I  D+DP A     E
Sbjct: 5   HRSVLLEEAVTALITTADGTYVDGTYGRGGHSRRVLAALSEAGRLIGFDKDPEAAVHA-E 63

Query: 77  TMRDYKEQFSLFQATFSQLQDY-VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
            +     +FS F  +F+ + D   P++G  GV+ DLGVSS Q+D G+RGFSFQ  GPLDM
Sbjct: 64  DLAATDSRFSFFHRSFADIPDIKRPEQGFSGVLLDLGVSSPQLDNGERGFSFQSDGPLDM 123

Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM  S G++A+  +N+A + +L ++    GEE+ A+RIA+AI+  R+  P + T  L+ +
Sbjct: 124 RMDSSSGVTAAVWINKAPLAELIQVFRDYGEERFATRIANAIIDAREETPIERTGRLAQI 183

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           ++      + ++ HPATR FQA+RIF+N E+E+L   L      L  GG L+V+SFHSLE
Sbjct: 184 VKVAHPRWEPHK-HPATRVFQAIRIFINRELEDLESVLVRVIDTLDVGGRLVVISFHSLE 242

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           DR+VK+F    S  V   R +   +A       +  K V P+ E++A N R+RSA +R  
Sbjct: 243 DRIVKRFMRDESRGVSVPRGVPIRDADMGRRLRVVGKAVKPSTEELANNPRARSAVMRVA 302

Query: 315 MRTV 318
            R  
Sbjct: 303 ERLA 306


>gi|300788105|ref|YP_003768396.1| S-adenosyl-methyltransferase [Amycolatopsis mediterranei U32]
 gi|299797619|gb|ADJ47994.1| S-adenosyl-methyltransferase [Amycolatopsis mediterranei U32]
          Length = 317

 Score =  349 bits (896), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 115/315 (36%), Positives = 172/315 (54%), Gaps = 10/315 (3%)

Query: 16  TIGDHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFA 70
           T  +HVPVLL +++ L  P       V++DAT G GG+S +  +    +  +ALDRDP A
Sbjct: 2   TAPEHVPVLLSRIVELFTPVFTDRDGVLVDATVGLGGHSDALLEAFPRLRLVALDRDPAA 61

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSF 127
           +    E +  + ++       +  L + +   G+   DG++FDLGVSSMQ+D  +RGF++
Sbjct: 62  LEKSAERLARHGDRVDFVHTVYDGLPEALESVGLEKADGILFDLGVSSMQLDRAERGFAY 121

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
            K  PLDMRM  + G +A+DV+N     +L RIL   GEE+ A RI  A+V  R+  PF 
Sbjct: 122 SKDSPLDMRMDPTTGFTAADVLNTYAPGELIRILRDYGEERFAQRIVKAVVAAREKEPFT 181

Query: 187 TTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           T+  L  L+   V  + +    HPA R+FQALRI VN E+E L + + +A  AL  GG +
Sbjct: 182 TSGRLVELLYDAVPAATRRTGGHPAKRTFQALRIEVNGELEVLRRAMPAALGALPVGGRI 241

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           +V S+ SLEDRLVK+  A  +         +    H    + +T+      +E++  N R
Sbjct: 242 VVESYQSLEDRLVKQALAELAKSRTPEGLPVELPGHGPELKLLTRGAEKAGEEEIERNPR 301

Query: 306 SRSAKLRAGMRTVER 320
           + S +LRA  R  E 
Sbjct: 302 AASVRLRAAERIGEP 316


>gi|148657877|ref|YP_001278082.1| S-adenosyl-methyltransferase MraW [Roseiflexus sp. RS-1]
 gi|262826166|sp|A5UZS9|RSMH_ROSS1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|148569987|gb|ABQ92132.1| S-adenosyl-methyltransferase MraW [Roseiflexus sp. RS-1]
          Length = 313

 Score =  349 bits (896), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 112/306 (36%), Positives = 166/306 (54%), Gaps = 22/306 (7%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
            H PVLL +V+A L P PG   +D T G GG++ +  +       ++ +D DP A++   
Sbjct: 22  HHTPVLLAEVVAGLLPRPGGRYIDGTVGGGGHAAAILEASSPDGRLLGIDCDPAALAAAA 81

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +  Y ++ +L + +F ++       G   V+GVV DLGVSS Q+D  +RGFSFQ   P
Sbjct: 82  ARLAPYGDRVTLVRGSFREIGQLAATSGFVQVEGVVLDLGVSSYQLDTPERGFSFQAHAP 141

Query: 133 LDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMR+      +A+ +VN    ++L  ++   GEE+ + RIA AIV+ RQ  P  TT +L
Sbjct: 142 LDMRLDPDAPVTAAHLVNNLPEQELADLIFRYGEERGSRRIARAIVEARQRKPVTTTDEL 201

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           ++++ + +   +  RIHPATR+FQALRI VNNE+  L   L      L  GG + +++FH
Sbjct: 202 AAIVTRAL-GGQRGRIHPATRTFQALRIAVNNELASLEAALPQIIDLLAPGGRMAIIAFH 260

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+VK                  + A       IT+K V  + E+   N RSRSA+L
Sbjct: 261 SLEDRIVKHTLR--------------AEAQAGRLHIITRKPVEASIEEQRANPRSRSARL 306

Query: 312 RAGMRT 317
           R   R 
Sbjct: 307 RVAERV 312


>gi|288939887|ref|YP_003442127.1| S-adenosyl-methyltransferase MraW [Allochromatium vinosum DSM 180]
 gi|288895259|gb|ADC61095.1| S-adenosyl-methyltransferase MraW [Allochromatium vinosum DSM 180]
          Length = 339

 Score =  349 bits (896), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 118/305 (38%), Positives = 168/305 (55%), Gaps = 10/305 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H PVLLE+ ++ L      + +D TFG GG+SR+          ++  DRDP AV+ G+ 
Sbjct: 35  HKPVLLEESVSALLVQSDGIYVDGTFGRGGHSRAILARLGAAGRLLGFDRDPEAVAVGRA 94

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVD----GVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            +     +FS+ Q +F+ +   + + GVD    G++ DLGVSS Q+D  +RGFSF   GP
Sbjct: 95  -LAAQDPRFSIHQGSFADIGRLLDEAGVDARLNGLLLDLGVSSPQLDTPERGFSFMAEGP 153

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM   SG SA+  + +A   ++  +L   GEE+ A+RIA AIV+ R   P +TT  L
Sbjct: 154 LDMRMDPDSGESAAQWLARAEQGEIATVLHEFGEERFANRIARAIVETRTQTPIRTTAQL 213

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + L+ + V   +  + HPATR+FQA+RI VN E+E L + L      L  GG L V+SFH
Sbjct: 214 AELVARAVPRREPGK-HPATRTFQAVRIQVNGELEALRRCLDQVCDRLAVGGRLAVISFH 272

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDRLVK+F    +      + +               K V P+  + A N R+RSA L
Sbjct: 273 SLEDRLVKRFIRREAKGPELPKGVPARAVEVQGRLRPVGKSVRPSTAEEALNPRARSAIL 332

Query: 312 RAGMR 316
           R   R
Sbjct: 333 RVAER 337


>gi|328881795|emb|CCA55034.1| rRNA small subunit methyltransferase H [Streptomyces venezuelae
           ATCC 10712]
          Length = 318

 Score =  349 bits (895), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 123/310 (39%), Positives = 188/310 (60%), Gaps = 10/310 (3%)

Query: 20  HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           HVPV+L++ + +L P    PG V++D T G GG+S +  +      ++ALDRD  A+   
Sbjct: 6   HVPVMLQRCLDMLAPALERPGAVVVDCTLGLGGHSEALLRRFPEARLVALDRDKEALRLS 65

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            E +  Y E+ +L  A + +L + +   G   VDGV+FDLGVSSMQ+D  DRGF++ +  
Sbjct: 66  GERLAPYGERATLVHAVYDELPEVLDRLGLATVDGVLFDLGVSSMQLDEADRGFAYAQDA 125

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + GISA++V+N     +L RIL   GEEKQA RI  AIV+ R+  PF  +  
Sbjct: 126 PLDMRMDQTTGISAAEVLNTYAPGELVRILRAYGEEKQAKRIVSAIVREREKEPFSNSAR 185

Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  LI++++   +K    +PA R+FQALRI VN E++ + + + +A KA+  GG ++V+S
Sbjct: 186 LVELIRESLPQAAKRTGGNPAKRTFQALRIEVNRELDSVEKAIPAAVKAIGVGGRVVVLS 245

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           + SLEDR+VK+ FA+ +         +    +    + +T+   +PT+E+VA NRR+  A
Sbjct: 246 YQSLEDRIVKQVFAAGAATTAPPGLPVVPEKYQPRLKLLTRGAELPTEEEVAENRRAAPA 305

Query: 310 KLRAGMRTVE 319
           +LR   R  E
Sbjct: 306 RLRGAERIRE 315


>gi|50086346|ref|YP_047856.1| S-adenosyl-methyltransferase MraW [Acinetobacter sp. ADP1]
 gi|54036183|sp|Q6F7D1|RSMH_ACIAD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|49532322|emb|CAG70034.1| S-adenosylmethionine methyltransferase [Acinetobacter sp. ADP1]
          Length = 303

 Score =  349 bits (895), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 107/308 (34%), Positives = 166/308 (53%), Gaps = 16/308 (5%)

Query: 20  HVPVLLEKVIALL-NPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
           H+ VLL + +  L       + +D TFG GG++R       +   V   D+DP A++   
Sbjct: 3   HISVLLHETVDALLANRDTGIYIDGTFGRGGHTRLLLSKLGSDAQVYGFDKDPQALAVAH 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + +     +F +  A+F+ +Q  +  +G   V+GV+ DLGVSS Q+D  +RGFSF + GP
Sbjct: 63  Q-LEQEDLRFKIIHASFADIQTELEQRGITQVEGVMADLGVSSPQLDQAERGFSFMQDGP 121

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G +A++ +     + L  I+   GEE+ + RIA AI +       +TT  L
Sbjct: 122 LDMRMDNSQGKTAAEWLLSIEEEALANIIYQYGEERYSRRIARAIKQA---GALETTAQL 178

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + L++      + ++ HPATR+FQA+RI +N E+E++   L  A   LK  G L V++FH
Sbjct: 179 AELVKTAHPKWEKHK-HPATRTFQAIRIAINKELEDIEIFLPQAVTLLKPEGRLAVITFH 237

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNA-HPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDRL+K+F    S         +P         + I++  +  ++E+V  N RSRSA 
Sbjct: 238 SLEDRLIKQFIQKESTLPEDSGWGLPQKQVDSRRLKKISR--IRASEEEVKANPRSRSAW 295

Query: 311 LRAGMRTV 318
           LR   R V
Sbjct: 296 LRVAERLV 303


>gi|19705032|ref|NP_602527.1| S-adenosyl-methyltransferase MraW [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|21759278|sp|Q8R6F5|RSMH_FUSNN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|19712944|gb|AAL93826.1| Methyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
          Length = 314

 Score =  349 bits (895), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 107/306 (34%), Positives = 170/306 (55%), Gaps = 10/306 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+PVL  + +  L   P    +D T G G +S    +  S+   +I++D+D  A+   ++
Sbjct: 9   HIPVLYYETLDNLVINPDGTYIDCTLGGGSHSEGILERLSDKGLLISIDQDTNAIEYSKK 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  +  ++ +F+  F  +       GVD   G++ D+GVSS Q+D  DRGFS++    L
Sbjct: 69  RLEKFGSKWKVFKGNFENIDTIAYMAGVDKVDGILMDIGVSSKQLDDPDRGFSYRYDVKL 128

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+    ISA DVVN  + + L++I+   GEE+ A +IA  IV+ R+S+P + T DL 
Sbjct: 129 DMRMNTDQKISAYDVVNTYSEEQLSKIIFEYGEERHARKIAKLIVEERKSSPIEKTSDLI 188

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +LI++     +    HPA ++FQA+RI VN E+E L   +  A + LK GG L +++FHS
Sbjct: 189 TLIKRAYP--ERASKHPAKKTFQAIRIEVNRELEVLENAMSKAVELLKVGGRLAIITFHS 246

Query: 253 LEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK  F   +      +   I        F+ ITKK ++P  +++  N R+ S+KL
Sbjct: 247 LEDRIVKNKFKDLATACKCPKDIPICVCGGVKKFEIITKKPIIPIDDELKNNNRAHSSKL 306

Query: 312 RAGMRT 317
           R   R 
Sbjct: 307 RILERI 312


>gi|254426992|ref|ZP_05040699.1| S-adenosyl-methyltransferase MraW [Alcanivorax sp. DG881]
 gi|196193161|gb|EDX88120.1| S-adenosyl-methyltransferase MraW [Alcanivorax sp. DG881]
          Length = 312

 Score =  349 bits (895), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 113/313 (36%), Positives = 168/313 (53%), Gaps = 8/313 (2%)

Query: 12  AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDP 68
              +T  +H PV+LE+V+ +         +D TFG GG+SR+          +  +DRDP
Sbjct: 2   TTENTQYEHQPVMLEEVLDMWFSQSEGFYVDGTFGRGGHSRALLARLDDNGRLAGIDRDP 61

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFS 126
            A++ GQE +     +F +    F  L   V   G  +DG++ DLGVSS Q+D   RGFS
Sbjct: 62  QAIAAGQE-LAASDSRFHMVANRFDCLPQVVEQAGRPIDGLLLDLGVSSPQLDDAARGFS 120

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           F + GPLDMRM  + G S ++ ++ A  KD+  +L   GEE+++  IA  I   R+  P 
Sbjct: 121 FLRDGPLDMRMDPTQGESVAEWLSHAAEKDIANVLYRYGEERKSRWIAKRICDTRKEQPI 180

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
             T  L++LI+  +  ++  + HPATRSFQALRI +N E++ L Q L  + + L  GG L
Sbjct: 181 TRTLQLANLIESVLGRNEQGK-HPATRSFQALRIHINGELDALNQVLEQSLETLAIGGRL 239

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
            ++SFHSLEDR+VK F    SG+    R  +P             K +  ++ ++  N R
Sbjct: 240 AIISFHSLEDRIVKLFIRDHSGRAPKGRGGLPLGNEMPQRLEPVGKAMRASKAELKVNVR 299

Query: 306 SRSAKLRAGMRTV 318
           SRSA LR   +  
Sbjct: 300 SRSAVLRVAEKVA 312


>gi|212213353|ref|YP_002304289.1| S-adenosyl-methyltransferase MraW [Coxiella burnetii CbuG_Q212]
 gi|263447408|sp|B6J2R7|RSMH_COXB2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|212011763|gb|ACJ19144.1| S-adenosyl-methyltransferase [Coxiella burnetii CbuG_Q212]
          Length = 307

 Score =  349 bits (895), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 117/305 (38%), Positives = 178/305 (58%), Gaps = 11/305 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H PVL ++V+  L   P  + +D TFG GG+S    +       ++A+D+DP AV+   +
Sbjct: 4   HKPVLFDEVMEGLAIRPDGIYVDGTFGRGGHSFGILQRLGPNGRLMAMDKDPDAVAVENK 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            + +   + S+   TF+ LQ  V D+G    V+G++ D+GVSS Q++   RGFSF K GP
Sbjct: 64  ALFE-DARLSIVHETFANLQKAVRDRGWEGKVNGILLDIGVSSPQLEDAKRGFSFSKDGP 122

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+    + A+  +NQA ++D+ R+L   GEE+ A RIA AIV  R+  P   TQ+L
Sbjct: 123 LDMRMNPKQSMDAASWINQAAMEDIRRVLWNYGEERFAKRIAQAIVNAREEKPITRTQEL 182

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           S ++ K     +  + HPATR+FQA+RIF+N E++EL + L    + L  GG L V+SFH
Sbjct: 183 SDIVIKAYP-QREIKKHPATRTFQAIRIFINRELDELRECLPQCLETLAVGGRLCVISFH 241

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDRLVK+F    S   +     I +       + +   ++ PT+ ++  N R+RSA+L
Sbjct: 242 SLEDRLVKRFIQKESRDHLPREIPILAKDIKHRLKPLGS-LIRPTEAEIKKNPRARSARL 300

Query: 312 RAGMR 316
           R   +
Sbjct: 301 RIVEK 305


>gi|166365785|ref|YP_001658058.1| S-adenosyl-methyltransferase MraW [Microcystis aeruginosa NIES-843]
 gi|263456493|sp|B0JKS7|RSMH_MICAN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|166088158|dbj|BAG02866.1| S-adenosyl-L-methionine-dependent methyltransferase [Microcystis
           aeruginosa NIES-843]
          Length = 292

 Score =  349 bits (895), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 118/305 (38%), Positives = 174/305 (57%), Gaps = 27/305 (8%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76
            H+ VL +++IA LN  PG   LD T G GG+SR   +      V A+DRD  A+   + 
Sbjct: 6   PHISVLSQELIAGLNIQPGGHYLDLTLGGGGHSRLLLEAHPETTVTAIDRDQSALEAAKI 65

Query: 77  TMRDY-KEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           ++  Y   + +L+   F+       +   DG++ DLGVSS Q D  +RGFSF+ +  LDM
Sbjct: 66  SLAPYLDSRLTLWWGNFADYDG--QNSSFDGIIADLGVSSPQFDQSERGFSFRHTAALDM 123

Query: 136 RMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM  C  ++A+D++N  + K+L  +    GEE+ +  IA +IV++R   PF TT +L+++
Sbjct: 124 RMDRCQSLTAADIINHWHEKELADLFYQYGEERLSRPIARSIVQKR---PFTTTTELAAV 180

Query: 195 IQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           I  +V  S +  RIHPATR FQALRI VN E++ L Q L  A   LK+ G++ ++SFHSL
Sbjct: 181 IASSVPASYRYGRIHPATRVFQALRIAVNQELDSLQQLLDQAPHWLKSRGIIAMISFHSL 240

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           EDRL+K  F   +                   + ITKK ++P++E+ A N RSRSAKLR 
Sbjct: 241 EDRLIKYGFRENNS-----------------LKIITKKPIIPSREEQAKNPRSRSAKLRI 283

Query: 314 GMRTV 318
             +  
Sbjct: 284 AQKIE 288


>gi|329115569|ref|ZP_08244291.1| Ribosomal RNA small subunit methyltransferase H [Acetobacter
           pomorum DM001]
 gi|326694997|gb|EGE46716.1| Ribosomal RNA small subunit methyltransferase H [Acetobacter
           pomorum DM001]
          Length = 335

 Score =  349 bits (895), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 134/318 (42%), Positives = 185/318 (58%), Gaps = 14/318 (4%)

Query: 12  AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFA 70
               T   H+PV+L +V+  L PA G  ILD TFG GGYS +  K    NV  +DRDP A
Sbjct: 8   TPPETAQGHIPVMLPEVLEYLYPADGGRILDCTFGGGGYSSAILKSADCNVWGIDRDPDA 67

Query: 71  VSCGQETMRDYK-----EQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGD 122
           ++ GQ   R +       +  + Q +F  +Q      G+   DG+V DLGVSS Q+D  D
Sbjct: 68  IARGQALSRHFPAANGTSRLHMLQGSFGNMQALASAAGISTFDGIVLDLGVSSFQLDEAD 127

Query: 123 RGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           RGFSF+  GPLDMRM  SG SA+D+VN+A   +L  I    GEE+ A R+A A+V  R  
Sbjct: 128 RGFSFRMEGPLDMRMEKSGPSAADIVNKAPEAELADIFHFYGEERHARRLARAVVNARSE 187

Query: 183 APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
            PF+TT  L++L++  +   + + I  ATR+FQ LRI VN+E+ E+ +GL  A   L  G
Sbjct: 188 MPFETTTQLANLVRSVIPKDR-SGIDSATRAFQGLRIAVNDELGEIERGLEQALDMLAPG 246

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP----SNAHPAVFQSITKKVVVPTQE 298
           G L+VVSFHSLEDR+ K+     +GK  +     P    + A  A F ++T K   PT  
Sbjct: 247 GRLVVVSFHSLEDRIAKRMVQHATGKDKSFSRYDPRAAGTPAPEADFVALTHKARRPTDT 306

Query: 299 DVAFNRRSRSAKLRAGMR 316
           + ++N R+RSA+LRA M+
Sbjct: 307 ECSYNPRARSARLRAVMK 324


>gi|255533217|ref|YP_003093589.1| S-adenosyl-methyltransferase MraW [Pedobacter heparinus DSM 2366]
 gi|255346201|gb|ACU05527.1| S-adenosyl-methyltransferase MraW [Pedobacter heparinus DSM 2366]
          Length = 301

 Score =  349 bits (895), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 113/304 (37%), Positives = 157/304 (51%), Gaps = 16/304 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           HVPVLL   I  LN  P  V +D TFG GG+S    K   +   +IA D+DP A      
Sbjct: 6   HVPVLLAACIDGLNIRPEGVYVDVTFGGGGHSIEILKKLGDKGVLIAFDQDPDAR----- 60

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +F      F+ L++ +   G   VDG++ DLGVSS Q +  +RGFS +    L
Sbjct: 61  RNEIDDPRFHFVDQNFAFLKNNLRLLGFKAVDGILADLGVSSHQFNEPERGFSTRFDAAL 120

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM   G ++A++V+N      L +I GI GE K A  +A AIV  R   P  T  D  
Sbjct: 121 DMRMDKQGKLTAAEVLNTYTEDQLHKIFGIYGEVKNAKSLARAIVTGRVERPVLTLADFK 180

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           ++    +   K ++     + FQALRI VN E+E L   L      +K GG L+V+S+HS
Sbjct: 181 AVAAAHIPKGKEHK--YMAQVFQALRIEVNAEMEVLENFLSQTADVIKPGGRLVVMSYHS 238

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR VK F A    +    +    +   P  F+++T+K +V   E++  N R+RSAKLR
Sbjct: 239 LEDRPVKNFIAKGKFRGEVDKDFFGNEQKP--FKAVTRKAIVADAEELERNSRARSAKLR 296

Query: 313 AGMR 316
            G R
Sbjct: 297 VGER 300


>gi|169632239|ref|YP_001705975.1| S-adenosylmethionine methyltransferase [Acinetobacter baumannii
           SDF]
 gi|263433355|sp|B0VPF9|RSMH_ACIBS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|169151031|emb|CAO99677.1| S-adenosylmethionine methyltransferase [Acinetobacter baumannii]
          Length = 307

 Score =  348 bits (894), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 109/310 (35%), Positives = 171/310 (55%), Gaps = 16/310 (5%)

Query: 20  HVPVLLEKVIA-LLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
           H+ VLL + +  LL      V +DATFG GG++          + V A D+DP A+    
Sbjct: 3   HISVLLFETVESLLADRTTGVYIDATFGRGGHTHLLLSKLDENARVYAFDKDPQALEVA- 61

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +     +F++  A+F+ +++ + + GV   DG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 62  AALAQEDPRFTIIHASFADIKEKMQEIGVQSVDGIMADLGVSSPQLDQAERGFSFMQDGP 121

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G++A++ + +   +DL  I+   GEE+ + RIA AI +        TT  L
Sbjct: 122 LDMRMDNSKGLTAAEWLLEVEEEDLANIIYQYGEERHSRRIARAIKQA---GKLDTTAQL 178

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + +++      + ++ HPATR+FQA+RI +N E++++   L  A   LK  G L V+SFH
Sbjct: 179 AEIVKTAHPKWEKHK-HPATRTFQAIRIAINKELDDIEVFLPQAVDLLKPKGRLSVISFH 237

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNA-HPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDRL+K+F    S         +P         + I++  V  ++E+V  N RSRSA 
Sbjct: 238 SLEDRLIKQFIQKESTLTEDSGWGMPQQQVDTRRLKKISR--VRVSEEEVKANPRSRSAW 295

Query: 311 LRAGMRTVER 320
           LR   R  ++
Sbjct: 296 LRVAERLEQK 305


>gi|159045015|ref|YP_001533809.1| S-adenosyl-methyltransferase MraW [Dinoroseobacter shibae DFL 12]
 gi|263446387|sp|A8LSB5|RSMH_DINSH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|157912775|gb|ABV94208.1| S-adenosyl-L-methionine-dependent methyltransferase
           [Dinoroseobacter shibae DFL 12]
          Length = 333

 Score =  348 bits (894), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 144/333 (43%), Positives = 195/333 (58%), Gaps = 5/333 (1%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRD 67
           M +A       H+PVLLE ++    P      LD TFGAGGY+R   + G+  VI +D+D
Sbjct: 1   MVAAQDPPNAPHIPVLLEPILTRCAPIT-GTWLDGTFGAGGYARGLLEAGADRVIGVDQD 59

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
           P A+    +   DY ++  L    F  L  +     +DGVV DLGVSSMQ+D  +RGFSF
Sbjct: 60  PLALEMAADWAGDYGDRLRLVAGNFEALDAHAGGP-LDGVVLDLGVSSMQLDRAERGFSF 118

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
            + GPLDMRM+  G SA+D+V + +   L  IL  LGEE+ A RIA AIV  R  AP   
Sbjct: 119 LRDGPLDMRMAQHGRSAADLVAEEDADMLADILFHLGEERAARRIARAIVAARAVAPITR 178

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T  L+ ++   +   K  + H ATRSFQALRI VN+E+  L +GL +AE AL+ GG L V
Sbjct: 179 TSQLAEIVASCLPRPKPGQSHAATRSFQALRIAVNDELGALVRGLEAAEGALEPGGWLAV 238

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPS-NAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+FHS+EDR+VK+FF   SG         P     PA F+   +K + PT+ +VA N R+
Sbjct: 239 VTFHSIEDRIVKRFFTQASGGAGRANRYAPETEDTPARFRLEPRKAIAPTEAEVAANPRA 298

Query: 307 RSAKLRAGMRTVERSI-EDDSFVHLPRLPTLSQ 338
           RSA+LR G RT   ++  D + + LP L TL++
Sbjct: 299 RSARLRIGRRTAAPAMPADRAALGLPHLYTLTE 331


>gi|89055260|ref|YP_510711.1| S-adenosyl-methyltransferase MraW [Jannaschia sp. CCS1]
 gi|122498265|sp|Q28NM6|RSMH_JANSC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|88864809|gb|ABD55686.1| methyltransferase [Jannaschia sp. CCS1]
          Length = 327

 Score =  348 bits (894), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 143/330 (43%), Positives = 192/330 (58%), Gaps = 7/330 (2%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRD 67
           M+  I      H+PVLL  ++  + P    V LD TFGAGGY+R   + G++ VI +DRD
Sbjct: 1   MTDEIDK--APHIPVLLGAILREVAPVS-GVWLDGTFGAGGYARGLLEGGADTVIGVDRD 57

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
           P A     +    Y +   L + TFS L   + D+ +DGV  DLGVSSMQ+D  +RGFSF
Sbjct: 58  PLAFEMAADWAGSYGDALRLKEGTFSNLDT-LADEPLDGVALDLGVSSMQLDLAERGFSF 116

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
            + GPLDMRM   G+SA D+VN A  K L  IL   GEE+ A RIA AIV  R      +
Sbjct: 117 MRDGPLDMRMGQIGVSAEDLVNDAPEKLLADILFQYGEERAARRIAKAIVAERLKCRINS 176

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T  L+ +++K +   K  + HPATRSFQA+RI VN+E  +LAQGL +AE+AL+ GG L V
Sbjct: 177 TLQLAGIVEKCLPSKKPGQSHPATRSFQAIRIAVNDEFGQLAQGLMAAERALRPGGKLAV 236

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT-KKVVVPTQEDVAFNRRS 306
           V+FHS EDR+VKKF + RS          P  A      ++T +K + P  +++A N R+
Sbjct: 237 VTFHSSEDRIVKKFMSERSSTGGGGSRYAPEAAAKVPGFTLTPRKAIPPDADEIARNTRA 296

Query: 307 RSAKLRAGMRTVERSIE-DDSFVHLPRLPT 335
           RSAKLR   RT   +       + LP+L  
Sbjct: 297 RSAKLRIATRTDAPAQPVAPETLGLPQLEG 326


>gi|256846119|ref|ZP_05551577.1| MraW methylase [Fusobacterium sp. 3_1_36A2]
 gi|256719678|gb|EEU33233.1| MraW methylase [Fusobacterium sp. 3_1_36A2]
          Length = 314

 Score =  348 bits (894), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 105/308 (34%), Positives = 171/308 (55%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+PVL  + +  L   P  + +D T G G +S    +  S+   +I++D+D  A+   ++
Sbjct: 9   HIPVLYYETLDNLVINPDGIYIDCTLGGGSHSEGILERLSDKGLLISIDQDTNAIEYSKK 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  +  ++ +F+  F  +           VDG++ D+GVSS Q+D   RGFS++    L
Sbjct: 69  RLEKFGSKWKVFKGNFENIDTIAYMASVDKVDGILMDIGVSSKQLDDPKRGFSYRYDVKL 128

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+    ISA DVVN  + + L++I+   GEE+ A +IA  IV+ R+S+P + T DL 
Sbjct: 129 DMRMNTEQKISAYDVVNTYSEEQLSKIIFEYGEERHARKIAKLIVEERKSSPIEKTSDLI 188

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +LI++     +    HPA ++FQA+RI VN E+E L   +  A + LK GG L +++FHS
Sbjct: 189 ALIKRAYP--ERASKHPAKKTFQAIRIEVNRELEVLENAMSKAVELLKVGGRLAIITFHS 246

Query: 253 LEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK  F   +      +   I        F+ ITKK ++P  +++  N R+ S+KL
Sbjct: 247 LEDRIVKNKFKDLATACKCPKDIPICVCGGVKKFEIITKKPIIPIDDELKNNNRAHSSKL 306

Query: 312 RAGMRTVE 319
           R   R ++
Sbjct: 307 RILERILD 314


>gi|86148532|ref|ZP_01066819.1| S-adenosyl-methyltransferase [Vibrio sp. MED222]
 gi|218708478|ref|YP_002416099.1| S-adenosyl-methyltransferase MraW [Vibrio splendidus LGP32]
 gi|263505899|sp|B7VIZ5|RSMH_VIBSL RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|85833678|gb|EAQ51849.1| S-adenosyl-methyltransferase [Vibrio sp. MED222]
 gi|218321497|emb|CAV17449.1| S-adenosyl-methyltransferase mraW [Vibrio splendidus LGP32]
          Length = 316

 Score =  348 bits (894), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 113/323 (34%), Positives = 168/323 (52%), Gaps = 23/323 (7%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           M+ A       H+ VLL + I  L   P    +D TFG GG+SR+          + ++D
Sbjct: 1   MTEAF-----KHISVLLNESIDGLAIKPDGTYIDGTFGRGGHSRTILSKLGENGRLFSID 55

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCG 121
           RDP A++  Q+       +F++    FS + +Y         VDGV+ DLGVSS Q+D  
Sbjct: 56  RDPQAIAEAQKI---DDPRFTIIHGPFSGMAEYAERYDLVGQVDGVLLDLGVSSPQLDDA 112

Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF K GPLDMRM  + GI  S  + +A++ D+T ++   GE+K A RIA  I+  +
Sbjct: 113 ERGFSFMKDGPLDMRMDPTTGIPVSQWLVEADLDDITWVIREFGEDKHARRIAKGIIAYQ 172

Query: 181 QSA---PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
           ++    P   T  L+ LI      S   + HPATR+FQA RI++N+E+EE+   L+ A  
Sbjct: 173 ENEENEPLTRTGQLAKLISDVAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAAS 232

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVV 293
            L   G + V+SFHSLEDR+VK+F    S        +  +                K +
Sbjct: 233 ILAPQGRISVISFHSLEDRMVKRFIRKESQGPQVPHGLPLTEEQIKALGSADLKPIGKAI 292

Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316
            P++++V  N RSRS+ LR   +
Sbjct: 293 KPSKDEVDENTRSRSSVLRIAEK 315


>gi|329118760|ref|ZP_08247458.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Neisseria
           bacilliformis ATCC BAA-1200]
 gi|327465107|gb|EGF11394.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Neisseria
           bacilliformis ATCC BAA-1200]
          Length = 316

 Score =  348 bits (894), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 120/313 (38%), Positives = 170/313 (54%), Gaps = 10/313 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPF 69
           +      HV VLL + +  L      V +D TFG GG+SR           ++  D+DP 
Sbjct: 1   MSSEAFSHVSVLLHEAVDALAVVSDGVYVDGTFGRGGHSRLILSHLGANGRLVVFDKDPQ 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFS 126
           AV+  +E       + S+    FS  Q  +    V   DG +FDLG+SS QID G RGFS
Sbjct: 61  AVAAARELAAQ-DGRVSVVHDGFSCFQTALDALNVGQIDGALFDLGISSPQIDDGSRGFS 119

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           F+   PLDMRM  + G+SA++ +  A+  ++  ++   GEE+ A +IA AIV +R + P 
Sbjct: 120 FRFDAPLDMRMDTTRGMSAAEWLAAADEDEICEVIRNYGEERFARQIARAIVAQRGTNPI 179

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            TT  L+ +  + V   +  +  PATR+FQA+RIF+N E+EE+A  L  A   LK+GG L
Sbjct: 180 DTTGKLAQVAAQNVRTRERGQ-DPATRTFQAVRIFINRELEEIAAALPQAAGRLKSGGRL 238

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNR 304
            V+SFHSLEDR+VK+FF   S      R  +   A  P    ++  K V  +  +VA N 
Sbjct: 239 AVISFHSLEDRIVKQFFRRHSEHEPLPRWAMVREADLPQPPLALVGKAVKASAAEVAANP 298

Query: 305 RSRSAKLRAGMRT 317
           R+RSA LR   RT
Sbjct: 299 RARSAVLRVARRT 311


>gi|297199072|ref|ZP_06916469.1| MraW methylase [Streptomyces sviceus ATCC 29083]
 gi|197715975|gb|EDY60009.1| MraW methylase [Streptomyces sviceus ATCC 29083]
          Length = 318

 Score =  348 bits (894), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 125/310 (40%), Positives = 183/310 (59%), Gaps = 10/310 (3%)

Query: 20  HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           HVPV+L++ + LL P    PG V++D T G GG+S +  +      +IALDRD  A+   
Sbjct: 6   HVPVMLQRCLDLLAPALERPGSVVVDCTLGLGGHSEALLQRFPEARLIALDRDKEALRLS 65

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            E +  + E+ +L  A + +L D +   G   V GV+FDLGVSSMQ+D  DRGF++ +  
Sbjct: 66  GERLAPFGERATLVHAVYDELPDVLDRLGIARVQGVLFDLGVSSMQLDEADRGFAYAQDA 125

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + G+SA++V+N     +L RIL   GEEKQA RI  AIV+ R   PF  +  
Sbjct: 126 PLDMRMDQTTGMSAAEVLNTYPAGELVRILRAYGEEKQAKRIVSAIVRERDKEPFTNSAR 185

Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  LI+ ++   +K    +PA R+FQALRI VN E+  L + + +A KAL  GG + V+S
Sbjct: 186 LVELIRDSLPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVKALAVGGRIAVLS 245

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           +HSLEDRLVK+ FA+ +         +    +    + +T+   +PT+E++A NRR+  A
Sbjct: 246 YHSLEDRLVKQVFAAGAATTAPPGLPVVPERYQPRLKLLTRGAELPTEEEIAENRRAAPA 305

Query: 310 KLRAGMRTVE 319
           + R   R  E
Sbjct: 306 RCRGAERIRE 315


>gi|221194757|ref|ZP_03567814.1| S-adenosyl-methyltransferase MraW [Atopobium rimae ATCC 49626]
 gi|221185661|gb|EEE18051.1| S-adenosyl-methyltransferase MraW [Atopobium rimae ATCC 49626]
          Length = 328

 Score =  348 bits (894), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 112/309 (36%), Positives = 169/309 (54%), Gaps = 12/309 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H PV+L +V+  LNP PG+++ D T G  G++    K        I +D+D  A      
Sbjct: 12  HQPVMLAEVLQQLNPKPGEIVCDCTLGGAGHTVELAKRIVPDGLSIGIDQDDMAHEAAAA 71

Query: 77  TMRDYKE--QFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +       +F   +  F  L   +      GVD  +FD+GVSS Q+D  +RGFS+ +  
Sbjct: 72  RIAKEVPTAEFLPLKGNFGDLDTLLVSAEVPGVDCFLFDIGVSSPQLDIPERGFSYHEDA 131

Query: 132 PLDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
           PLDMRM       +A +VVN     DLTRIL + G+E  A RIAH IV+ R++AP +TT 
Sbjct: 132 PLDMRMDPGKQTPTAQEVVNTYTEADLTRILRVFGDETFAPRIAHRIVEVRKTAPIKTTL 191

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L  +I+ ++  + + +  HPA ++FQALRI VN+E++ L +GLRSA      GG + V+
Sbjct: 192 QLVEVIKASIPAAARRHGGHPARKTFQALRIEVNHELDVLERGLRSAIAWANPGGRICVI 251

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           ++HSLEDR+VK  F+  S   +      +    H  +    TKK +  T E++  N R+R
Sbjct: 252 AYHSLEDRIVKHVFSELSQGCICPPDLPVCVCGHVPIVDVKTKKPLTATSEEITQNPRAR 311

Query: 308 SAKLRAGMR 316
           SA +R  ++
Sbjct: 312 SALMRVAVK 320


>gi|84394442|ref|ZP_00993158.1| S-adenosyl-methyltransferase [Vibrio splendidus 12B01]
 gi|84374941|gb|EAP91872.1| S-adenosyl-methyltransferase [Vibrio splendidus 12B01]
          Length = 316

 Score =  348 bits (894), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 112/323 (34%), Positives = 168/323 (52%), Gaps = 23/323 (7%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           M+ A       H+ VLL + I  L   P    +D TFG GG+SR+          + ++D
Sbjct: 1   MTEAF-----KHISVLLNESIDGLAIKPDGTYIDGTFGRGGHSRTILSKLGENGRLFSID 55

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCG 121
           RDP A++  Q+       +F++    FS + +Y         VDGV+ DLGVSS Q+D  
Sbjct: 56  RDPQAIAEAQKI---DDPRFTIIHGPFSGMAEYAERYDLVGQVDGVLLDLGVSSPQLDDA 112

Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF K GPLDMRM  + G+  S  + +A++ D+T ++   GE+K A RIA  I+  +
Sbjct: 113 ERGFSFMKDGPLDMRMDPTTGVPVSQWLVEADLDDITWVIREFGEDKHARRIAKGIIAYQ 172

Query: 181 QSA---PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
           ++    P   T  L+ LI      S   + HPATR+FQA RI++N+E+EE+   L+ A  
Sbjct: 173 ENEENEPLTRTGQLAKLISDVAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAAS 232

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVV 293
            L   G + V+SFHSLEDR+VK+F    S        +  +                K +
Sbjct: 233 ILAPQGRISVISFHSLEDRMVKRFIRKESQGPQVPHGLPLTEDQIKALGSADLKPIGKAI 292

Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316
            P++++V  N RSRS+ LR   +
Sbjct: 293 KPSKDEVDENTRSRSSVLRIAEK 315


>gi|330469297|ref|YP_004407040.1| 16S rRNA m(4)C1402 methyltranserfase [Verrucosispora maris
           AB-18-032]
 gi|328812268|gb|AEB46440.1| 16S rRNA m(4)C1402 methyltranserfase [Verrucosispora maris
           AB-18-032]
          Length = 394

 Score =  348 bits (893), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 116/333 (34%), Positives = 186/333 (55%), Gaps = 11/333 (3%)

Query: 2   ESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGK----VILDATFGAGGYSRSFCKM 57
           E    K +   +    G HVPVLLE+ + LL PA G+    V +DAT G  G++ +  + 
Sbjct: 18  EENKVKPVGVDMGELRGTHVPVLLERCLELLAPALGRGGRTVHVDATLGLAGHAEAVLQA 77

Query: 58  GSN--VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLG 112
                ++ LDRD  A+   +  +  + ++  L  A + +L + +   G   VDG++FDLG
Sbjct: 78  HPETILVGLDRDTEALEHARVRLARFADRVHLEHAVYDELPEVLDRLGYPTVDGILFDLG 137

Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASR 171
           VSS+Q+D  DRGF++ +  PLDMRM  + G++A +VVN     +L R+L + GEEK A R
Sbjct: 138 VSSLQLDAPDRGFAYAQDAPLDMRMDQTRGVTAEEVVNTYTHPELARVLRVYGEEKFAGR 197

Query: 172 IAHAIVKRRQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQ 230
           IA AI++ R+     ++  L+ L+++++   ++    HPA R+FQALRI VN E+  L  
Sbjct: 198 IASAIIRERERVRITSSARLAELVRESIPAPARRTGGHPAKRTFQALRIEVNRELAVLET 257

Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK 290
            L +A   L  GG L+V+S+HSLEDRL K+  A R      +   +        F+ +++
Sbjct: 258 ALPAALDRLSVGGRLVVLSYHSLEDRLTKQALADRVRSTGPIDLPVELPGSEPTFRLLSR 317

Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIE 323
              +P + +VA N R+ S +LRA  R   ++ +
Sbjct: 318 GAELPGEAEVAANPRAASVRLRAAERIDPQARQ 350


>gi|308271432|emb|CBX28040.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [uncultured Desulfobacterium sp.]
          Length = 312

 Score =  348 bits (893), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 103/308 (33%), Positives = 168/308 (54%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H+PV+ ++VI  L+  PGK+  D T G  G++++ C+       ++ +D+D  A+   ++
Sbjct: 5   HIPVMTKEVIHYLDCKPGKIYADCTIGGSGHAKAICEKIMPNGILVGIDQDKDAIENAKK 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  +     LF   F  L +++       VDG+V DLG+S  QID   RGFSF+ + PL
Sbjct: 65  ILFPHLPNIHLFHGNFVNLSEFLLKCNITKVDGIVLDLGLSLHQIDSSKRGFSFKNTEPL 124

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  S I+A +++N+ +  +L +++   GEE  A  IA  IVK R+    +T  +L 
Sbjct: 125 DMRMNTDSDINAGNLINKLDEVNLWKLIRDYGEEPWARNIARNIVKARKDCEIKTNAELV 184

Query: 193 SLIQKTVYFSK--NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
            +I  ++        +IHPATR F ALRI VNNE+E L++ + +    L   G L V++F
Sbjct: 185 KIISDSIPKKIQYKQKIHPATRVFMALRIAVNNELERLSEFMDNVADLLNPEGRLCVLTF 244

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK+       + +   +          + +++ KK + P +E+   N  +RSA
Sbjct: 245 HSLEDRIVKQKIREMEKECVCPPNFPKCICNKIKLVRAVNKKAIAPGKEETDINPMARSA 304

Query: 310 KLRAGMRT 317
           KLR   R 
Sbjct: 305 KLRVAERI 312


>gi|83949459|ref|ZP_00958192.1| S-adenosyl-methyltransferase MraW [Roseovarius nubinhibens ISM]
 gi|83837358|gb|EAP76654.1| S-adenosyl-methyltransferase MraW [Roseovarius nubinhibens ISM]
          Length = 314

 Score =  348 bits (893), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 140/313 (44%), Positives = 192/313 (61%), Gaps = 6/313 (1%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYK 82
           ++E +IA + P      LD T GAGGY+R     G++ VI +DRDP A     +   +Y 
Sbjct: 1   MIEPLIAEVAPVT-GTWLDGTLGAGGYTRYLLAAGADKVIGVDRDPLAHDLAAQWGAEYG 59

Query: 83  EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI 142
           ++  L +  FS++ DY  D  +DGVV DLGVSSMQ+D   RGFSFQK GPLDMRMS  G 
Sbjct: 60  DRLELVRGVFSKMDDYATD--LDGVVLDLGVSSMQLDQPMRGFSFQKDGPLDMRMSQEGE 117

Query: 143 SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS 202
           +A+ +VN A+  DL  IL + GEE+ + RIA AIV+ R+ A   TT  LS +++K +   
Sbjct: 118 TAAHIVNSADEGDLADILFLYGEERASRRIARAIVRAREEAAIVTTLQLSEIVEKCLPRP 177

Query: 203 KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF 262
           K  + HPATRSFQALRI VN+E  ELA+GL +AE+ALK GG L VV+FHS+EDR+VK+F 
Sbjct: 178 KPGQAHPATRSFQALRIAVNDEYGELAEGLAAAERALKPGGKLAVVTFHSIEDRMVKRFI 237

Query: 263 ASR-SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERS 321
            SR  G     RH   +      F  +++K    ++ ++  N R+RSA+LR   RT    
Sbjct: 238 QSRLGGAGRGSRHAPETIEVAPQFTQVSRKATSASEAEIDRNPRARSARLRVATRTDAPP 297

Query: 322 IE-DDSFVHLPRL 333
              D   + +P+L
Sbjct: 298 APLDRRAIGMPQL 310


>gi|226953729|ref|ZP_03824193.1| S-adenosylmethionine methyltransferase [Acinetobacter sp. ATCC
           27244]
 gi|294651784|ref|ZP_06729082.1| S-adenosylmethionine methyltransferase [Acinetobacter haemolyticus
           ATCC 19194]
 gi|226835517|gb|EEH67900.1| S-adenosylmethionine methyltransferase [Acinetobacter sp. ATCC
           27244]
 gi|292822341|gb|EFF81246.1| S-adenosylmethionine methyltransferase [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 307

 Score =  348 bits (893), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 105/310 (33%), Positives = 168/310 (54%), Gaps = 16/310 (5%)

Query: 20  HVPVLLEKVIAL-LNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
           H+ VLL + +   L      V +DATFG GG+++         + V A D+DP A+    
Sbjct: 3   HISVLLHETVDGVLAGRDTGVYVDATFGRGGHTKLLLSKLDPNARVYAFDKDPQALEVAA 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + +     +F +  A+F+ +Q  +   G   VDG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 63  Q-LEQEDSRFKIIHASFADIQAELAKIGIIEVDGIMADLGVSSPQLDQAERGFSFMQDGP 121

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G++A++ + +   + L  I+   GEE+ + RIA AI          TT  L
Sbjct: 122 LDMRMDNSQGLTAAEWLLEIEEEKLANIIYQYGEERYSRRIAKAIKLA---GEITTTAQL 178

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + +++      + ++ HPATR+FQA+RI +N E++++   L  A + LK  G L V+SFH
Sbjct: 179 AEIVKVAHPKWEKHK-HPATRTFQAIRIAINKELDDIEIFLPQAVELLKPTGQLAVISFH 237

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDRL+K+F    S         +P +       + +++  +  ++ +V  N RSRSA 
Sbjct: 238 SLEDRLIKQFIQKESTLAEDHGWGMPQAQIDTRRLKKVSR--IRASEAEVKANPRSRSAW 295

Query: 311 LRAGMRTVER 320
           LR   R  ++
Sbjct: 296 LRVAERLEKK 305


>gi|158334035|ref|YP_001515207.1| S-adenosyl-methyltransferase MraW [Acaryochloris marina MBIC11017]
 gi|263433314|sp|B0BYK8|RSMH_ACAM1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|158304276|gb|ABW25893.1| S-adenosyl-methyltransferase MraW, putative [Acaryochloris marina
           MBIC11017]
          Length = 298

 Score =  348 bits (893), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 116/304 (38%), Positives = 168/304 (55%), Gaps = 27/304 (8%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76
           +H+ VL  +++A L      + LDAT G GG+S           VIALD+D  A+   + 
Sbjct: 9   NHISVLSHELMAGLMLQEQGLYLDATVGGGGHSALILSQYPQTQVIALDQDIQALEAARA 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
            + D  ++   +Q  FS       +   DG++ DLGVSS Q+D  +RGFSF+    LDMR
Sbjct: 69  KLHDACDRIQFWQGNFSTYHP--GELRFDGIIADLGVSSAQLDRPERGFSFRYDADLDMR 126

Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M  S G++A+DV+N  + +DL  I    GEE+ + RIA  IV +R   P +TT DL+ ++
Sbjct: 127 MDQSQGLTAADVINTYSERDLADIFYHYGEERFSRRIARKIVSKR---PLRTTSDLARVV 183

Query: 196 QKTVYFS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
             ++  +  +  RIHPATR FQALRI VN E++ L + +  A   LK GG + ++SFHSL
Sbjct: 184 ASSLPAAKGRRRRIHPATRVFQALRIAVNQELQVLEKFIEIAPTWLKPGGRIGIISFHSL 243

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           EDR+VK  F   S                 + Q +TKK +V ++++   N RSRSAKLR 
Sbjct: 244 EDRIVKIHFRQNS-----------------LLQVVTKKPIVASEQEKRENSRSRSAKLRF 286

Query: 314 GMRT 317
             R 
Sbjct: 287 AERV 290


>gi|325198906|gb|ADY94362.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis G2136]
          Length = 316

 Score =  348 bits (893), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 111/303 (36%), Positives = 167/303 (55%), Gaps = 10/303 (3%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRD 80
           +L + +  L      V +D TFG GG+SR           +I  D+DP A++  +E +  
Sbjct: 1   MLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFDKDPQAIAVAEE-LAR 59

Query: 81  YKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
             ++  +    F+  Q  +   G   VDG +FDLG+SS QID G RGFSF+   PLDMRM
Sbjct: 60  SDKRVGVVHGGFASFQAALDGLGIGKVDGALFDLGISSPQIDDGSRGFSFRFDAPLDMRM 119

Query: 138 SCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
             + G+SA++ +  A+ +DL  ++   GEE+ + +IA AIV +R  +P  TT+ L+ ++ 
Sbjct: 120 DTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRAESPIDTTRKLAQIVA 179

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
           + V   +  +  PATR+FQA+RIF+N E+EE+   L      LK GG L V++FHSLEDR
Sbjct: 180 QNVRTRERGQ-DPATRTFQAVRIFINRELEEVGAVLPQVMCRLKEGGRLAVIAFHSLEDR 238

Query: 257 LVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           +VK+F    S      R      A  P +   I  + + P + ++A N R+RSA LR   
Sbjct: 239 IVKQFVKKYSQHAPLPRWAAVREADLPELPLKIVGRALKPGEAEIAANPRARSAVLRVAE 298

Query: 316 RTV 318
           RT 
Sbjct: 299 RTA 301


>gi|76798783|ref|ZP_00780998.1| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae 18RS21]
 gi|77405004|ref|ZP_00782105.1| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae H36B]
 gi|77410569|ref|ZP_00786929.1| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae CJB111]
 gi|22533299|gb|AAM99192.1|AE014204_10 conserved hypothetical protein TIGR00006 [Streptococcus agalactiae
           2603V/R]
 gi|76585867|gb|EAO62410.1| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae 18RS21]
 gi|77163284|gb|EAO74235.1| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae CJB111]
 gi|77176443|gb|EAO79211.1| S-adenosyl-methyltransferase MraW [Streptococcus agalactiae H36B]
          Length = 298

 Score =  348 bits (893), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 95/298 (31%), Positives = 155/298 (52%), Gaps = 10/298 (3%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDYKE--QF 85
           +L+  P  + +DAT G  G+S           ++ A D+D  A+      ++ Y +  Q 
Sbjct: 1   MLDIKPDGIYVDATLGGAGHSEYLLSQLGPDGHLYAFDQDQKAIDNAHIRLKKYVDTGQV 60

Query: 86  SLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-G 141
           +  +  F  L   +   GV   +G+ +DLGVSS Q+D  +RGFS+++  PLDMRM+    
Sbjct: 61  TFIKDNFRNLSSNLKALGVSEINGICYDLGVSSPQLDERERGFSYKQDAPLDMRMNREQS 120

Query: 142 ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYF 201
           ++A DVVN  +  DL RI    GE+K + +IA  I + R      TT +L+ +I+ +   
Sbjct: 121 LTAYDVVNTYSYHDLVRIFFKYGEDKFSKQIARKIEQVRAEKTISTTTELAEIIKSSKSA 180

Query: 202 SK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKK 260
            +   + HPA + FQA+RI VN+E+    + ++ A   L   G + V++FHSLEDRL K+
Sbjct: 181 KELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAMDLLAVDGRISVITFHSLEDRLTKQ 240

Query: 261 FFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318
            F   S   +        +      + + +K ++P+QE++  N R+ SAKLR   R  
Sbjct: 241 LFKEASTVEVPKGLPFIPDDLQPKMELVNRKPILPSQEELEANNRAHSAKLRVARRIR 298


>gi|149927124|ref|ZP_01915381.1| S-adenosyl-methyltransferase [Limnobacter sp. MED105]
 gi|149824063|gb|EDM83284.1| S-adenosyl-methyltransferase [Limnobacter sp. MED105]
          Length = 323

 Score =  347 bits (892), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 122/314 (38%), Positives = 180/314 (57%), Gaps = 16/314 (5%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
           +  +H+PVLL+  +  L   P  + LD TFG GG+SR+  +       ++ALDRDP AV 
Sbjct: 2   STDEHIPVLLQPTVDALLHTPDGLYLDCTFGRGGHSRALLEKLSAQGQLVALDRDPQAVQ 61

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK 129
              E       +F   ++ F+ L+  +   G   VDGV+ D+GVSS QID  +RGFSF++
Sbjct: 62  AMGEI---KDSRFRGVRSAFADLESALDSLGIDQVDGVLMDIGVSSPQIDQAERGFSFRR 118

Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM   +G SA+D + +A+ +++  ++   GEE+ A +IA AIV RR   P  TT
Sbjct: 119 DGPLDMRMDPQTGESAADFLARADAREIKEVIKNYGEERFAVQIATAIVARRTERPITTT 178

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            DL+ ++   V   +  +  PATR+FQALRI VN E+ +L QGL +A K L+ GG L V+
Sbjct: 179 LDLAQIVAGAVRTREPGQ-DPATRTFQALRIHVNQELAQLEQGLTAAFKRLRVGGRLAVI 237

Query: 249 SFHSLEDRLVKKFFASRSGKVM---AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           SFHSLEDR+ K+F    +       A    +P      + + + +  + PT+E+   N R
Sbjct: 238 SFHSLEDRITKQFIEKLANPKSQQDARLRKLPLPEPTPLMKKLDR--IKPTKEECELNPR 295

Query: 306 SRSAKLRAGMRTVE 319
           SRS+ LR   +  E
Sbjct: 296 SRSSVLRVAEKLAE 309


>gi|170738613|ref|YP_001767268.1| S-adenosyl-methyltransferase MraW [Methylobacterium sp. 4-46]
 gi|263456469|sp|B0UFI0|RSMH_METS4 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|168192887|gb|ACA14834.1| S-adenosyl-methyltransferase MraW [Methylobacterium sp. 4-46]
          Length = 337

 Score =  347 bits (892), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 143/308 (46%), Positives = 196/308 (63%), Gaps = 8/308 (2%)

Query: 18  GDHVPVLLEKVIALLNPAPG-KVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCG 74
             H+PVLL +V  +L    G  V++D TFGAGGYSR+      ++  IA+DRDP AV+ G
Sbjct: 4   APHIPVLLAEVRGVLRLGEGPGVVVDGTFGAGGYSRALLAADPDLRVIAIDRDPTAVAAG 63

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           QE       +  L Q  F  L   V  +GV   DGVV D+GVSSMQ+D  +RGFSF+  G
Sbjct: 64  QELAAAAGGRLRLVQGRFGDLDAIVRREGVEAVDGVVLDIGVSSMQLDRAERGFSFRADG 123

Query: 132 PLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           PLDMRM  +G SA+D+VN A   +L  I+   GEE+++  +A AI++ R+ AP  TT  L
Sbjct: 124 PLDMRMEGAGTSAADLVNGAPEAELADIIYHFGEERRSRAVARAILEARRRAPIATTGAL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++   V     + IHPATR+FQALRI VN+E+ EL + L +AE+ L+ GG L VV+FH
Sbjct: 184 AEIVAGVVRAEPGSGIHPATRTFQALRIAVNDELGELNRALHAAERILRPGGRLAVVTFH 243

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK+FF++RSG+ ++    +P    P    F  +TK  V P++ + A N R+RSA
Sbjct: 244 SLEDRIVKQFFSARSGRAVSASRHLPMAERPVPRSFTLVTKGPVGPSEAEAAANPRARSA 303

Query: 310 KLRAGMRT 317
           KLRAG RT
Sbjct: 304 KLRAGERT 311


>gi|254479883|ref|ZP_05093131.1| S-adenosyl-methyltransferase MraW [marine gamma proteobacterium
           HTCC2148]
 gi|214039445|gb|EEB80104.1| S-adenosyl-methyltransferase MraW [marine gamma proteobacterium
           HTCC2148]
          Length = 308

 Score =  347 bits (892), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 110/309 (35%), Positives = 165/309 (53%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
              H  VLL + +  L  AP    +D TFG GG+SR          +++ +D+DP A  C
Sbjct: 2   ANMHQTVLLREAVEALVTAPSGAYVDGTFGRGGHSRFLLDQLDDNGHLLGVDKDPVACEC 61

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKS 130
             + +     +FS +  +F+ L   +    +D   G++ DLGVSS Q+D   RGFSF   
Sbjct: 62  AAQ-LSSADSRFSFYHGSFADLPQQLQLMDIDAFDGILLDLGVSSPQLDEAGRGFSFMSD 120

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
           GPLDMRM  S G +A+  ++ A+   +  +L   GEE+ A RIA AIVK R+  P  TT 
Sbjct: 121 GPLDMRMDTSSGETAAQWLSYADTTAIAEVLKEYGEERFAKRIAAAIVKAREVEPLTTTA 180

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            L+ ++ +     + ++ HPATR+FQA+RI VN E+E+L   L S+   LK GG L+V+S
Sbjct: 181 QLAKVVSEANPRWERHK-HPATRAFQAIRIKVNRELEDLGDLLASSLDMLKVGGRLVVIS 239

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDR+VK++    +        +  ++A       +  K    +  +V  N RSRSA
Sbjct: 240 FHSLEDRMVKRYMRDMARGEQLPAGVPVTDAALNRRMKLVGKATKASDAEVDENVRSRSA 299

Query: 310 KLRAGMRTV 318
            +R   +  
Sbjct: 300 VMRVAEKIA 308


>gi|187735156|ref|YP_001877268.1| S-adenosyl-methyltransferase MraW [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187425208|gb|ACD04487.1| S-adenosyl-methyltransferase MraW [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 520

 Score =  347 bits (891), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 115/304 (37%), Positives = 175/304 (57%), Gaps = 7/304 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+ VLL + + +L   PGK I+D T G GG++    + G+ V  +DRD  A       + 
Sbjct: 219 HITVLLHETVDMLKAGPGKFIVDCTLGGGGHTELLLEQGATVWGIDRDADARRAAMLRLA 278

Query: 80  DYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
            +  +F +    F  ++  +  +G   VDG++ DLGVSS Q+D   RGFSF++ GPLDMR
Sbjct: 279 RFGSRFKVLAGNFQDVESILSQQGVSRVDGLLADLGVSSHQLDTASRGFSFREDGPLDMR 338

Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M   + +SA ++VN+A  +++  IL   GEE+ +  IA A+VK R  AP  TT  L+ ++
Sbjct: 339 MDTRAALSARNLVNEAPEEEIANILWQFGEERASRAIARAMVKARAQAPITTTAQLARIV 398

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           +  +   +  R HP TR+FQALRI VN E++ L   L S+ + L  GG + V++FHSLED
Sbjct: 399 ESVLP--RKGRQHPGTRTFQALRIAVNGELDALDALLDSSVRLLGQGGRMAVITFHSLED 456

Query: 256 RLVKKFFASRSGKVM-AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           R VK+FF  RS   +       P       F+ +++K V   +E+++ N RSRSAKLR  
Sbjct: 457 RRVKQFFDLRSRPEIDRPEWPAPRPNPDYCFRPLSRKPVTAGEEELSTNPRSRSAKLRGV 516

Query: 315 MRTV 318
            + +
Sbjct: 517 EKII 520


>gi|148284404|ref|YP_001248494.1| S-adenosyl-methyltransferase MraW [Orientia tsutsugamushi str.
           Boryong]
 gi|262824724|sp|A5CD85|RSMH_ORITB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|146739843|emb|CAM79768.1| S-adenosyl-methyltransferase [Orientia tsutsugamushi str. Boryong]
          Length = 312

 Score =  347 bits (891), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 121/308 (39%), Positives = 181/308 (58%), Gaps = 8/308 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETM 78
           H PV+  ++++ L P   +  LD TFG GGYS+         +IA DRDP  +S   +  
Sbjct: 5   HTPVMATEMLSYLAPVDNETYLDCTFGTGGYSKLILSNCNCKIIAFDRDPAVISIASQFY 64

Query: 79  RDYKEQFSLFQATFSQLQDYV-PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
           + Y  +F+ F   F +   Y+     ++G+V DLGVSSMQ+D  +RGFSF+    LDMRM
Sbjct: 65  QQYSNRFTFFNDNFVEANKYLSKSAKLNGIVMDLGVSSMQLDAANRGFSFRYDAELDMRM 124

Query: 138 SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK 197
           S  G  AS++VN+A+   L  I+   GEE +A++IA  IV  R+  P  TT  L+++I++
Sbjct: 125 SQKGYKASELVNEASEHQLADIIYKFGEENKANKIAKHIVLAREKKPITTTLQLANIIRE 184

Query: 198 TVYFS---KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
            V ++   K N+I  AT++FQA+RIF+N+E+  +   L  + + L   G LIVVSFH+LE
Sbjct: 185 AVGYNNYYKKNKIDSATKTFQAIRIFINDELSAIQNFLNQSLELLAVNGRLIVVSFHALE 244

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHP---AVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           D +VKKF    + K +A      +   P    V   +TKK+ VPT+ ++  N RSRSA+L
Sbjct: 245 DAIVKKFMHQNAVKKVAQSKYSTNKQLPLQNGVLHLLTKKIAVPTRTEIINNPRSRSARL 304

Query: 312 RAGMRTVE 319
           RA ++  E
Sbjct: 305 RAALKINE 312


>gi|302036124|ref|YP_003796446.1| s-adenosyl-L-methionine-dependent methyltransferase mraW
           [Candidatus Nitrospira defluvii]
 gi|300604188|emb|CBK40520.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Candidatus Nitrospira defluvii]
          Length = 309

 Score =  347 bits (891), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 118/314 (37%), Positives = 171/314 (54%), Gaps = 20/314 (6%)

Query: 12  AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDP 68
            I      H PVL+E+++  L   PG V +D T G  G +       +    ++ +DRD 
Sbjct: 2   EIDSARDSHEPVLVEEILFWLQCKPGGVYVDCTLGYAGLAARLLDRTAPDGILVGIDRDA 61

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGF 125
            A++  +  +R+   +       F  L+  +   GV   DGV+FDLGVSS Q+D  +RGF
Sbjct: 62  AALAESRMRLREVAHRVHFRHGNFCDLKALIIGSGVSRVDGVIFDLGVSSPQLDRAERGF 121

Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF++ GPLDMRM    G +A+D+V      +L  ++  LGEE+ + RIA AIV+ R    
Sbjct: 122 SFREDGPLDMRMDQREGRTAADLVRDLPETELADLIYQLGEERYSRRIARAIVQARMQGV 181

Query: 185 FQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
             TT  L++++++ V  S ++ RIH ATR+FQALRI VN E++ L   LR A   L  GG
Sbjct: 182 IATTWQLAAVVERAVPASYRHGRIHCATRTFQALRIAVNRELDVLEPALRDAVDILAPGG 241

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            +  VSFHSLEDR+VK  F + +            N   A  + +TKK V+ ++ +   N
Sbjct: 242 RVCAVSFHSLEDRIVKHTFRALA------------NGPEASVRVLTKKPVIASENERNRN 289

Query: 304 RRSRSAKLRAGMRT 317
            RSRSAKLR   R 
Sbjct: 290 PRSRSAKLRVVERI 303


>gi|103487373|ref|YP_616934.1| methyltransferase [Sphingopyxis alaskensis RB2256]
 gi|123078262|sp|Q1GRX1|RSMH_SPHAL RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|98977450|gb|ABF53601.1| methyltransferase [Sphingopyxis alaskensis RB2256]
          Length = 325

 Score =  347 bits (891), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 137/313 (43%), Positives = 198/313 (63%), Gaps = 10/313 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H PVLL++VIA L  APG+  +DATFGAGGY+R+    G+ VIA DRDP A++ G+  + 
Sbjct: 10  HDPVLLDEVIAALAIAPGERHVDATFGAGGYTRAMLAAGAEVIACDRDPDAIAGGEALVA 69

Query: 80  DYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
           +   + +L    F ++   + ++G   VDG+ FD+GVSSMQ+D G+RGFSFQK GPLDMR
Sbjct: 70  EADGRLTLIHGRFGEIDRLLAERGIDAVDGITFDIGVSSMQLDQGERGFSFQKDGPLDMR 129

Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
           M+  G SA+D +N+A+  ++  +L   G+E+Q+ R+A AIV  R   P   T +L+S+++
Sbjct: 130 MAQEGESAADWLNRADEYEIADVLYHYGDERQSRRVARAIVAAR---PLTRTSELASVVR 186

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
           K +         PAT+SFQA+RI +N E++EL  GL +AE+ L+ GG L VVSFHS EDR
Sbjct: 187 KALRHPPGAPKDPATKSFQAIRIHINRELDELVAGLAAAERVLRPGGRLAVVSFHSTEDR 246

Query: 257 LVKKFFASRSGKVMAVRH---MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           +VK F   RSG   A         + A  A F++  +K V P + + A N R+RSA LR+
Sbjct: 247 IVKHFLRERSGGDAAGSRHRPAPTAAARAATFETPARK-VRPGKAEEARNPRARSATLRS 305

Query: 314 GMRTVERSIEDDS 326
            +RT   +   +S
Sbjct: 306 AVRTAAPAWPGNS 318


>gi|189184784|ref|YP_001938569.1| S-adenosyl-methyltransferase MraW [Orientia tsutsugamushi str.
           Ikeda]
 gi|262824728|sp|B3CVD8|RSMH_ORITI RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|189181555|dbj|BAG41335.1| S-adenosyl-methyltransferase MraW [Orientia tsutsugamushi str.
           Ikeda]
          Length = 312

 Score =  347 bits (891), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 123/308 (39%), Positives = 181/308 (58%), Gaps = 8/308 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETM 78
           H PVL  ++++ L P   +  LD TFGAGGYS+         VIA DRDP  +S   +  
Sbjct: 5   HTPVLATEMLSYLAPVDNETYLDCTFGAGGYSKLILSNCNCKVIAFDRDPAVISIASQFY 64

Query: 79  RDYKEQFSLFQATFSQLQDYVPD-KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
           + Y  +F+ F   F +   Y+     ++G+V DLGVSSMQ+D  +RGFSF+    LDMRM
Sbjct: 65  QQYPNRFTFFNENFVEANKYLSKLDKLNGIVMDLGVSSMQLDEANRGFSFRYDAELDMRM 124

Query: 138 SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK 197
           S  G  AS+ VN+A+   L  I+   GEE +A++IA  IV  R+  P  TT  L+++I++
Sbjct: 125 SQKGYKASEFVNEASEHQLADIIYKFGEENKANKIAKHIVLARKKKPITTTLQLANIIRE 184

Query: 198 TVYFS---KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
            V ++   K N+I  AT++FQA+RIF+N+E+  +   L  + + L   G LIVVSFH+LE
Sbjct: 185 AVGYNNYYKKNKIDSATKTFQAIRIFINDELSAIQNFLNQSLELLAVNGRLIVVSFHALE 244

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHP---AVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           D ++KKF    + K +A      +   P    V   +TKK+ VPT+ ++  N RSRSA+L
Sbjct: 245 DAIIKKFMHQNAVKKVAQSKYSTNRQSPLQNGVLYLLTKKIAVPTRTEIINNPRSRSARL 304

Query: 312 RAGMRTVE 319
           RA ++  E
Sbjct: 305 RAALKINE 312


>gi|182439206|ref|YP_001826925.1| putative S-adenosylmethionine-dependent methyltransferase
           [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|262826728|sp|B1W0I2|RSMH_STRGG RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|178467722|dbj|BAG22242.1| putative S-adenosylmethionine-dependent methyltransferase
           [Streptomyces griseus subsp. griseus NBRC 13350]
          Length = 321

 Score =  347 bits (891), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 121/316 (38%), Positives = 180/316 (56%), Gaps = 13/316 (4%)

Query: 20  HVPVLLEKVIALLNPA------PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAV 71
           HVPV+L++ + LL PA      P  V++D T G GG+S +         +IALDRD  A+
Sbjct: 6   HVPVMLQRCLDLLAPALQDPAHPEPVVVDCTLGLGGHSEALLASFPTARLIALDRDKEAL 65

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQ 128
               E +  Y ++ +L  A + +L + +   G   V GV+FDLGVSSMQ+D  DRGF++ 
Sbjct: 66  RLSGERLAPYGDRATLVHAVYDELPEVLARLGIPKVQGVLFDLGVSSMQLDEADRGFAYA 125

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           +  PLDMRM  S G+ A++V+N     +L RIL   GEEKQA RI  A+V+ R+  PF  
Sbjct: 126 QDAPLDMRMDQSTGMGAAEVLNTYPPGELVRILRAYGEEKQAKRIVSAVVREREKEPFSN 185

Query: 188 TQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           +  L  LI+  +   +K    +PA R+FQALRI VN E+  L + + +A  +L  GG + 
Sbjct: 186 SARLVELIRDALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVDSLDVGGRIA 245

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+S+HSLEDRLVK+ FA+ +         +    +    + +T+   +PT+++VA NRR+
Sbjct: 246 VLSYHSLEDRLVKQVFAAGAANTAPPGLPVVPERYQPRLKQLTRGAELPTEQEVAENRRA 305

Query: 307 RSAKLRAGMRTVERSI 322
             A+LR   R      
Sbjct: 306 APARLRGAQRIRAEER 321


>gi|313206538|ref|YP_004045715.1| s-adenosyl-methyltransferase mraw [Riemerella anatipestifer DSM
           15868]
 gi|312445854|gb|ADQ82209.1| S-adenosyl-methyltransferase MraW [Riemerella anatipestifer DSM
           15868]
 gi|315023521|gb|EFT36525.1| S-adenosyl-methyltransferase mraW [Riemerella anatipestifer RA-YM]
 gi|325336013|gb|ADZ12287.1| Predicted S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [Riemerella anatipestifer
           RA-GD]
          Length = 297

 Score =  347 bits (891), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 109/305 (35%), Positives = 163/305 (53%), Gaps = 17/305 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQE 76
           H  VLL++ +  L      V +D TFG GG+SR               D+D  A+     
Sbjct: 3   HQSVLLKESVDALVLNADGVYVDCTFGGGGHSREIVSRLSSAGRHFGFDQDLDALEN--- 59

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             +   E+F++    F  L++ +   GV   DG++ DLGVSS Q D  +RGFS +   PL
Sbjct: 60  --KLDDERFTIINQNFRFLENSLMLYGVTQVDGILADLGVSSHQFDAAERGFSTRSDAPL 117

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+   G++A  VVN+   + L  I    GE ++A R+A  +V  R+S P +TT+DL 
Sbjct: 118 DMRMNVMQGLNAQKVVNEYEEEHLADIFYHYGELREARRLARELVHYRKSKPIKTTEDLK 177

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           S+ +      +N       + FQA+RI VN E+E L + L  A + LK GG L+V+S+HS
Sbjct: 178 SVFKYIPPHKQN---KFFAQLFQAIRIEVNQELEALKEMLEQAYRILKPGGRLVVISYHS 234

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDRLVK+F  +        R +     +   F+ +  K  VPT+E++  N R+RSAK+R
Sbjct: 235 LEDRLVKRFLKNGMFDGEPERDI--YGNYTKAFELLQSKAFVPTEEEIEANSRARSAKMR 292

Query: 313 AGMRT 317
            G++ 
Sbjct: 293 VGIKV 297


>gi|304321488|ref|YP_003855131.1| hypothetical protein PB2503_09684 [Parvularcula bermudensis
           HTCC2503]
 gi|303300390|gb|ADM09989.1| hypothetical protein PB2503_09684 [Parvularcula bermudensis
           HTCC2503]
          Length = 331

 Score =  347 bits (891), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 139/319 (43%), Positives = 202/319 (63%), Gaps = 10/319 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H PVLL+ VI  L+P PG++++D TFGAGGY+R   + G+ +IA DRDP A++ G+   R
Sbjct: 5   HQPVLLDAVIDRLSPQPGEILVDGTFGAGGYTRRLLEAGATIIAFDRDPTAIAAGRSLER 64

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
           +  +  +L +A FS L ++V    ++GVVFD GVSSMQ+D  +RGFSF+  GPLDMRM  
Sbjct: 65  ECGDALTLVEAPFSALAEHVA-PPINGVVFDFGVSSMQLDRPERGFSFRAEGPLDMRMG- 122

Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199
           +G  A+D VNQA    L  +    GEE+++  +A  IV +R++ PF+TT  L+++ +  +
Sbjct: 123 AGRPAADFVNQAEEAALADVFYHYGEERRSRALARRIVAQRETTPFETTAQLAAVAEAVL 182

Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259
                ++IHPATR FQALRI VN+E+ E+ + L +AEK L  GG L+ VSFHSLEDR+VK
Sbjct: 183 GT--RDKIHPATRMFQALRILVNDELGEIVRALIAAEKVLAEGGRLVAVSFHSLEDRIVK 240

Query: 260 KFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318
           +FF    G+   A RH  P +     F  +  K +   + ++A N R+RSA+LRAG+RT 
Sbjct: 241 RFFQVTEGRAQTASRHEPPVDKILPRFAPL-GKALSADEAEIAGNPRARSARLRAGVRTA 299

Query: 319 ERSIE----DDSFVHLPRL 333
               +      + + LP L
Sbjct: 300 APPTDWTEAALAQLGLPAL 318


>gi|332160404|ref|YP_004296981.1| S-adenosyl-methyltransferase MraW [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325664634|gb|ADZ41278.1| S-adenosyl-methyltransferase MraW [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 303

 Score =  347 bits (891), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 117/309 (37%), Positives = 174/309 (56%), Gaps = 19/309 (6%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRD 80
           +L++ +  LN     + +D TFG GG+SR           +IA+DRDP A+   +     
Sbjct: 1   MLDEAVNGLNIRDNGIYIDGTFGRGGHSRLILSQLGPEGRLIAIDRDPQAIEAAKSI--- 57

Query: 81  YKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
              +FS+    FS L  YV +      ++GV+ DLGVSS Q+D  +RGFSF + GPLDMR
Sbjct: 58  TDPRFSIVHGPFSDLAHYVRELDLVGRINGVLLDLGVSSPQLDDPERGFSFMRDGPLDMR 117

Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M  + GISA++ + +A+  D+  +L   GEE+ A R+A AIV+R  + P   T++L+ LI
Sbjct: 118 MDPTRGISAAEWLMKASADDIAWVLKTFGEERFAKRLAKAIVERNLTQPMTRTKELADLI 177

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
                F + ++ HPATRSFQA+RI++N+E+EE+ + L  A + L   G L V+SFHSLED
Sbjct: 178 ANASPFREKHK-HPATRSFQAIRIYINSELEEIERTLDGALEVLAPEGRLSVISFHSLED 236

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           R+VK F    S        +  + A          +S+ K  ++P   +VA N R+RS+ 
Sbjct: 237 RIVKNFIRHHSRGPQVPAGLPLTEAQLRSMGGRTLKSVGK--MMPPDAEVAENPRARSSV 294

Query: 311 LRAGMRTVE 319
           LR   R  E
Sbjct: 295 LRFAERIKE 303


>gi|307330443|ref|ZP_07609586.1| S-adenosyl-methyltransferase MraW [Streptomyces violaceusniger Tu
           4113]
 gi|306883868|gb|EFN14911.1| S-adenosyl-methyltransferase MraW [Streptomyces violaceusniger Tu
           4113]
          Length = 310

 Score =  347 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 113/307 (36%), Positives = 176/307 (57%), Gaps = 10/307 (3%)

Query: 24  LLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETM 78
           +L++ + +L P    PG V++D T G GG+S +  +      +IALDRDP A+    E +
Sbjct: 1   MLQRCLDMLAPALAQPGAVVVDCTLGLGGHSEALLRDFPEARLIALDRDPSALRLAGERL 60

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
             Y ++ +L  A + +L + +   GV    G++FDLGVSSMQ+D  +RGF++ +  PLDM
Sbjct: 61  APYGDRATLVHAVYDELPEVLDRLGVPRVQGILFDLGVSSMQLDEAERGFAYAQDAPLDM 120

Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM  + G+SA++V+N     +L RIL   GEEK A +I  A+V+ R   PF  +  L  L
Sbjct: 121 RMDQTTGVSAAEVLNTYPPGELVRILRAYGEEKFAKKIVDAVVRERAKEPFTNSARLVEL 180

Query: 195 IQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           I+  +   +K    +PA R+FQALRI VN E+  L + + +A   L  GG + V+S+HSL
Sbjct: 181 IRAALPQAAKRTGGNPAKRTFQALRIEVNGELAVLERAIPAAVGTLAVGGRIAVLSYHSL 240

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           EDRLVK+ FA+ +         +    +    + +T+   +PT+E++A NRR+  A+ R 
Sbjct: 241 EDRLVKQVFAAGARNTAPPGLPVIPEQYQPRLKLLTRGAELPTEEEIAENRRAAPARFRG 300

Query: 314 GMRTVER 320
             R  E 
Sbjct: 301 AERIREE 307


>gi|116750882|ref|YP_847569.1| S-adenosyl-methyltransferase MraW [Syntrophobacter fumaroxidans
           MPOB]
 gi|171460803|sp|A0LNY2|RSMH_SYNFM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|116699946|gb|ABK19134.1| S-adenosyl-methyltransferase MraW [Syntrophobacter fumaroxidans
           MPOB]
          Length = 319

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 126/307 (41%), Positives = 180/307 (58%), Gaps = 9/307 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
           +H+PV+LE+ + LL    G V +D T G GGYS +  +  +    ++ +D D  A+    
Sbjct: 8   EHIPVMLEQALELLACRRGGVYVDGTVGGGGYSEAILRASAPDGILLGVDWDAEAIGRAA 67

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +  Y  +  L +A F++L + +P  G   VDG+V DLGVS+ QID   RGFSF K GP
Sbjct: 68  GRLSAYGRRAILTKAGFAELPEVLPRHGFAQVDGIVLDLGVSAFQIDDAARGFSFTKDGP 127

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM      +A+D+VN    KDL  ++  LGEE+ + RIA A+V+RR+  PFQ T +L
Sbjct: 128 LDMRMDPGLPQTAADMVNTLPEKDLADLIFRLGEERWSRRIARAVVERRRERPFQRTLEL 187

Query: 192 SSLIQKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           +  +  TV  +++  RIHPATR+F ALR+ VN E+E L + L  A   LK GG L VVSF
Sbjct: 188 ADTVAATVPATRDSRRIHPATRTFLALRLAVNQELESLERFLSGALDLLKTGGRLCVVSF 247

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  F   +      R  ++       + + +T+K V P + +   N RSRSA
Sbjct: 248 HSLEDRMVKGQFKEWAKSCRCPREAVLCRCEGRPLVRLLTRKAVRPDEREKERNPRSRSA 307

Query: 310 KLRAGMR 316
           +LRA  +
Sbjct: 308 RLRAVEK 314


>gi|110833451|ref|YP_692310.1| methyltransferase [Alcanivorax borkumensis SK2]
 gi|123345754|sp|Q0VS10|RSMH_ALCBS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|110646562|emb|CAL16038.1| methyltransferase [Alcanivorax borkumensis SK2]
          Length = 312

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 114/313 (36%), Positives = 168/313 (53%), Gaps = 8/313 (2%)

Query: 12  AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDP 68
               T   H PV+LE+V+ +         +D TFG GG+SR+          +I +DRDP
Sbjct: 2   TTEDTQYAHQPVMLEEVLDMWFSQSEGFYVDGTFGRGGHSRALLSRLGENGRLIGIDRDP 61

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFS 126
            A++ GQ+ +     +F +    F  L   V   G  +DG++ DLGVSS Q+D   RGFS
Sbjct: 62  QAIAAGQQ-LAASDSRFHMMAGRFDCLPQAVEQAGRPIDGLLLDLGVSSPQLDDAARGFS 120

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           F + GPLDMRM  + G S ++ ++ A  KD+  +L   GEE+++  IA  I + R+  P 
Sbjct: 121 FLRDGPLDMRMDPTQGESVAEWLSYAAEKDIANVLYRYGEERKSRWIAKRICETRKEQPI 180

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
             T  L+ LI+  +  ++  + HPATRSFQALRI +N E++ L Q L  + + L  GG L
Sbjct: 181 TRTLQLADLIESVLGRNEQGK-HPATRSFQALRIHINGELDALDQVLEQSLETLAIGGRL 239

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
            ++SFHSLEDR+VK F    SG+    R  +P             KV+  ++ ++  N R
Sbjct: 240 AIISFHSLEDRIVKLFIRDHSGRAPKGRGGLPLGDELPQRLEPVGKVMRASKAELKVNVR 299

Query: 306 SRSAKLRAGMRTV 318
           SRSA LR   +  
Sbjct: 300 SRSAVLRIAEKVA 312


>gi|255326220|ref|ZP_05367306.1| S-adenosyl-methyltransferase MraW [Rothia mucilaginosa ATCC 25296]
 gi|255296674|gb|EET76005.1| S-adenosyl-methyltransferase MraW [Rothia mucilaginosa ATCC 25296]
          Length = 354

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 115/317 (36%), Positives = 176/317 (55%), Gaps = 15/317 (4%)

Query: 20  HVPVLLEKVIALLNP--------APGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPF 69
           HVPV+L++ I LL P             ++D T G GG+S +  +   N+  I +DRD  
Sbjct: 37  HVPVMLDRCINLLAPGIERAVEERGTAYVIDGTLGMGGHSEALLERFENLVLIGIDRDLQ 96

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFS 126
           A +   E +  + ++F    A + ++   +     +G+DG++ DLGVSSMQ+D   RGF+
Sbjct: 97  AHAIAGERLARFGDRFVPVHAVYDEIDRAMETAGVQGIDGILMDLGVSSMQLDERTRGFA 156

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           +    PLDMRM+    ++A  VVN+ +   L RI+   GEEK ASRIA AI   R +AP 
Sbjct: 157 YSYDAPLDMRMNSEDELTARIVVNEYSEDQLRRIIRNWGEEKFASRIARAICTARANAPL 216

Query: 186 QTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           +TT +L  +IQK V   ++    HPA R+FQALRI VN+E+E L + + +A +AL  GG 
Sbjct: 217 ETTGELVRIIQKAVPVAAQRTGGHPAKRTFQALRIEVNHELEALERAVPAALEALNLGGR 276

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
            + +S+HSLED++VK+   + +         +    H    + IT+    PT E++  N 
Sbjct: 277 FVAMSYHSLEDKIVKRALTAEATSKAPKGFPVELEEHKPTVKIITRGAEPPTDEEIEQNS 336

Query: 305 RSRSAKLRAGMRTVERS 321
           R+ SAKLRA  +    +
Sbjct: 337 RAASAKLRAAEKIRIPA 353


>gi|90423689|ref|YP_532059.1| methyltransferase [Rhodopseudomonas palustris BisB18]
 gi|123275305|sp|Q216E6|RSMH_RHOPB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|90105703|gb|ABD87740.1| methyltransferase [Rhodopseudomonas palustris BisB18]
          Length = 330

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 144/326 (44%), Positives = 198/326 (60%), Gaps = 8/326 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQETM 78
           H+PVL ++ + LL P  G V +DATFGAGGYS        + VI +DRD  A++ G + +
Sbjct: 7   HIPVLGQEAVGLLAPRDGGVYVDATFGAGGYSGLILAAADTRVIGIDRDRTAIAGGFDLV 66

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
                + +L +  FS L +    +G    DGVV D+GVSSMQ+D  +RGFSF+ +GPLDM
Sbjct: 67  ERSGGRLTLVEDRFSNLAEVCAAQGAGLVDGVVMDVGVSSMQLDQSERGFSFRLAGPLDM 126

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RM  SG SA+DV+  A+  +L  I+ I GEE+ +  +A AIV  R   P  TT+ L+ ++
Sbjct: 127 RMGQSGPSAADVIAVASEAELANIIYIFGEERHSRAVARAIVAARAIEPITTTRALADIV 186

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
            K V+ +K   IHPATR+FQ LRIFVN E++EL   L +AE+ LK GG L+VVSFHSLED
Sbjct: 187 GKVVH-AKPGEIHPATRTFQGLRIFVNGELDELHLALSAAERVLKPGGRLVVVSFHSLED 245

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           R+VK FF +R       RH+   +     F  +TK+ +    +++A N R+RSAKLRAG 
Sbjct: 246 RIVKNFFNARGKTGGGSRHLPELDQEAPSFAILTKRPITAGPDELAGNPRARSAKLRAGE 305

Query: 316 RTVERSIEDDSFVHLPRLPTLSQFRG 341
           RT   +   +    LP  PTL    G
Sbjct: 306 RTAALAHPGED---LPAWPTLDAVMG 328


>gi|256379773|ref|YP_003103433.1| S-adenosyl-methyltransferase MraW [Actinosynnema mirum DSM 43827]
 gi|255924076|gb|ACU39587.1| S-adenosyl-methyltransferase MraW [Actinosynnema mirum DSM 43827]
          Length = 316

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 114/314 (36%), Positives = 172/314 (54%), Gaps = 8/314 (2%)

Query: 16  TIGDHVPVLLEKVIALLNP----APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69
               HVPVLL++V+ LL P        V +D T G GG+S +  K      +I LDRDP 
Sbjct: 3   EAARHVPVLLDRVLGLLAPALAGRDDAVFVDCTLGLGGHSEAVLKAHPGVRLIGLDRDPQ 62

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
           A++  +  +  + ++    Q T+  + + V  + VDG++ DLGVSS+Q+D  +RGF++ +
Sbjct: 63  AIALAKARLAPFADRVEFVQTTYDGIAEAVDGRRVDGILMDLGVSSLQLDARERGFAYSQ 122

Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRMS  SG +A+DV+N     +L R+L   GEE+ A +IA A+V+ R   PF T+
Sbjct: 123 DAPLDMRMSAGSGETAADVLNTYPAAELARVLRDYGEERFARKIAAAVVRERAKEPFTTS 182

Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
             L  L+  +V  + +    HPA R+FQALRI VN E+E L   L +A   L  GG ++V
Sbjct: 183 GRLVELLYASVPAATRRTGGHPAKRTFQALRIEVNRELESLRAALPAALSVLAVGGRIVV 242

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
            S+ SLEDR+VK+  A  +     V   +    H      +T+   V  + ++  N R+ 
Sbjct: 243 ESYQSLEDRMVKRALADLAASRTPVGLPVELPGHGPELTLLTRGAEVANESEIEDNPRAA 302

Query: 308 SAKLRAGMRTVERS 321
             +LRA  R  E +
Sbjct: 303 PVRLRAAERIREAT 316


>gi|326779858|ref|ZP_08239123.1| Ribosomal RNA small subunit methyltransferase H [Streptomyces cf.
           griseus XylebKG-1]
 gi|326660191|gb|EGE45037.1| Ribosomal RNA small subunit methyltransferase H [Streptomyces cf.
           griseus XylebKG-1]
          Length = 321

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 121/316 (38%), Positives = 180/316 (56%), Gaps = 13/316 (4%)

Query: 20  HVPVLLEKVIALLNPA------PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAV 71
           HVPV+L++ + LL PA      P  V++D T G GG+S +         +IALDRD  A+
Sbjct: 6   HVPVMLQRCLDLLAPALQDPAHPEPVVVDCTLGLGGHSEALLASFPAARLIALDRDKEAL 65

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQ 128
               E +  Y ++ +L  A + +L + +   G   V GV+FDLGVSSMQ+D  DRGF++ 
Sbjct: 66  RLSGERLAPYGDRATLVHAVYDELPEVLARLGIPKVQGVLFDLGVSSMQLDEADRGFAYA 125

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           +  PLDMRM  S G+ A++V+N     +L RIL   GEEKQA RI  A+V+ R+  PF  
Sbjct: 126 QDAPLDMRMDQSTGMGAAEVLNTYPPGELVRILRAYGEEKQAKRIVSAVVREREKEPFSN 185

Query: 188 TQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           +  L  LI+  +   +K    +PA R+FQALRI VN E+  L + + +A  +L  GG + 
Sbjct: 186 SARLVELIRDALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVDSLDVGGRIA 245

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+S+HSLEDRLVK+ FA+ +         +    +    + +T+   +PT+++VA NRR+
Sbjct: 246 VLSYHSLEDRLVKQVFAAGAANTAPPGLPVVPERYQPRLKQLTRGAELPTEQEVAENRRA 305

Query: 307 RSAKLRAGMRTVERSI 322
             A+LR   R      
Sbjct: 306 APARLRGAQRIRAEER 321


>gi|148980580|ref|ZP_01816127.1| S-adenosyl-methyltransferase [Vibrionales bacterium SWAT-3]
 gi|145961163|gb|EDK26479.1| S-adenosyl-methyltransferase [Vibrionales bacterium SWAT-3]
          Length = 316

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 115/323 (35%), Positives = 167/323 (51%), Gaps = 23/323 (7%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           M+ A       H+ VLL + I  L   P    +D TFG GG+SR+          + ++D
Sbjct: 1   MTEAF-----KHISVLLNESIDGLAIKPDGTYIDGTFGRGGHSRTILSKLGENGRLFSID 55

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCG 121
           RDP A++  Q+       +F++    FS + +Y         VDGV+ DLGVSS Q+D  
Sbjct: 56  RDPQAIAEAQKI---DDPRFTIIHGPFSGMAEYAERYDLVGKVDGVLLDLGVSSPQLDDA 112

Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF K GPLDMRM   SGI  S  + +A++ D+T ++   GE+K A RIA  I+  +
Sbjct: 113 ERGFSFMKDGPLDMRMDPTSGIPVSQWLLEADLDDITWVIREFGEDKHARRIAKGIIAYQ 172

Query: 181 QSA---PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
           ++    P   T  L+ LI      S   + HPATR+FQA RI++N+E+EE+   L+ A  
Sbjct: 173 ENEENEPLTRTGQLAKLISDVAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAAS 232

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVV 293
            L   G L V+SFHSLEDR+VK+F    S        +  +                K +
Sbjct: 233 ILAPEGRLSVISFHSLEDRMVKRFIRKESQGPQVPHGLPLTEEQIKALGSADLKPVGKAI 292

Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316
            P++ +V  N RSRS+ LR   +
Sbjct: 293 KPSKGEVDENTRSRSSVLRIAEK 315


>gi|256028668|ref|ZP_05442502.1| methyltransferase [Fusobacterium sp. D11]
          Length = 331

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 108/325 (33%), Positives = 177/325 (54%), Gaps = 13/325 (4%)

Query: 3   SKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-- 60
            K+ + M    +     H+PVL  + +  L   P  + +D T G G +S    +  S+  
Sbjct: 12  RKNGEFMEKIGND---YHIPVLYYETLDNLVINPDGIYIDCTLGGGSHSEGILERLSDKG 68

Query: 61  -VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSM 116
            +I++D+D  A+   ++ +  +  ++ +F+  F  +       GVD   G++ D+GVSS 
Sbjct: 69  LLISIDQDINAIEYSKKRLEKFGSKWKVFKGNFENIDTIAYMAGVDKVDGILMDIGVSSK 128

Query: 117 QIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175
           Q+D  +RGFS++    LDMRM+    ISA DVVN  + + L++I+   GEE+ A +IA  
Sbjct: 129 QLDDPERGFSYRYDVKLDMRMNTEQKISAYDVVNTYSEEQLSKIIFEYGEERHARKIAKL 188

Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           I++ R+S+P + T DL +LI++     +    HPA ++FQA+RI VN E+E L   +  A
Sbjct: 189 ILEERKSSPIEKTSDLITLIKRAYP--ERASKHPAKKTFQAIRIEVNRELEVLENAISKA 246

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVV 294
            + LK GG L +++FHSLEDR+VK  F   +      +   I        F+ ITKK ++
Sbjct: 247 AELLKVGGRLAIITFHSLEDRIVKNKFKDLATACKCPKDIPICVCGGVKKFEIITKKPII 306

Query: 295 PTQEDVAFNRRSRSAKLRAGMRTVE 319
           P   ++  N RS S+KLR   R ++
Sbjct: 307 PIDNELKNNNRSHSSKLRILERILD 331


>gi|262377037|ref|ZP_06070263.1| MraW methylase [Acinetobacter lwoffii SH145]
 gi|262308075|gb|EEY89212.1| MraW methylase [Acinetobacter lwoffii SH145]
          Length = 303

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 112/308 (36%), Positives = 163/308 (52%), Gaps = 16/308 (5%)

Query: 20  HVPVLLEKVIALL-NPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
           H+ VLL + I  L         +D TFG GG++R         + V A D+DP A++   
Sbjct: 3   HISVLLHETIDALLAGRNTGTYVDGTFGRGGHTRLLLSKLDENARVYAFDKDPQALAVAA 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E +     +F +  A+F+ L+D + + G   VDGV+ DLGVSS Q+D  +RGFSF K GP
Sbjct: 63  E-LEQEDSRFKIIHASFADLKDALAELGIEHVDGVMADLGVSSPQLDQAERGFSFMKDGP 121

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G +A++ + Q   + L  I+   GEE+ + RIA AI          TT  L
Sbjct: 122 LDMRMDNSQGPTAAEWLTQIEEEALANIIFKYGEERYSRRIAKAIKAA---GYIDTTAKL 178

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + +++      + N+ H ATR+FQA+RI +N E+E++   L  A + LK    L V+SFH
Sbjct: 179 AEIVKVAHPKWEKNK-HAATRTFQAIRIAINKELEDIEIFLPQAVEILKPEARLAVISFH 237

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDRL+K+F    S         +P         + +++  V  + E+V  N RSRSA 
Sbjct: 238 SLEDRLIKQFIQKESTLEEDSGWGMPQQQKDTRRLKKVSR--VKASDEEVKANPRSRSAW 295

Query: 311 LRAGMRTV 318
           LR   R  
Sbjct: 296 LRVAERLA 303


>gi|149275993|ref|ZP_01882138.1| S-adenosyl-methyltransferase MraW [Pedobacter sp. BAL39]
 gi|149233421|gb|EDM38795.1| S-adenosyl-methyltransferase MraW [Pedobacter sp. BAL39]
          Length = 301

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 115/304 (37%), Positives = 156/304 (51%), Gaps = 16/304 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           HVPV+L++ I  LN  P  V +D TFG GG+SR   K       +I+ D+DP A      
Sbjct: 6   HVPVMLKECIDGLNIKPDGVYVDVTFGGGGHSREILKHLGKDGVLISFDQDPDAQLN--- 62

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             +    +F      F+ L++ +   G   VDG++ DLGVSS Q D  +RGFS +    L
Sbjct: 63  --KIDDPRFYFVDQNFAFLKNNLRLLGYKTVDGILADLGVSSHQFDVPERGFSTRFESLL 120

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM   G + ASDV+N      L +I GI GE K A  +A+A+V  R   P  +  D  
Sbjct: 121 DMRMDKQGALKASDVLNTYTEDQLHKIFGIYGEVKNAKSLANAVVTGRLERPIASLADFK 180

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
                 +   K ++     + FQALRI VN EI  L   L      LK GG L+V+S+HS
Sbjct: 181 RAAAAHIPKGKEHK--YMAQVFQALRIEVNAEITVLESFLMQTADVLKEGGRLVVMSYHS 238

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR VK F A    K    +    +   P  F+ IT+K +V   ++V  N R+RSAKLR
Sbjct: 239 LEDRPVKSFIAKGKFKGEVEKDFFGNELKP--FKVITRKAIVAEPDEVERNSRARSAKLR 296

Query: 313 AGMR 316
            G +
Sbjct: 297 IGEK 300


>gi|120437110|ref|YP_862796.1| S-adenosyl-methyltransferase MraW [Gramella forsetii KT0803]
 gi|171460858|sp|A0M534|RSMH_GRAFK RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|117579260|emb|CAL67729.1| S-adenosyl-methyltransferase MraW [Gramella forsetii KT0803]
          Length = 302

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 103/304 (33%), Positives = 170/304 (55%), Gaps = 17/304 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H PVLL++ +  L+  P  + +D TFG GG+S+   K       + A D+D  A+    E
Sbjct: 8   HNPVLLKESVDGLDVKPDGIYVDVTFGGGGHSKEILKRLGPDGKLYAFDQDKDALENKIE 67

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +F+L    F  L+ ++   G   VDGV+ D GVSS Q +  +RGFS +    L
Sbjct: 68  -----DGRFTLINENFRYLKRFLRFYGIKKVDGVLGDFGVSSHQFNEAERGFSTRFDAKL 122

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+    +SA +V+N+   + L ++     + K A ++A  IV  R++ P +T++ L+
Sbjct: 123 DMRMNQGDKLSAYEVINEYEEEQLKKLFWAYADLKNAPKLARTIVSERKNNPIETSEQLN 182

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            L++  ++  K N+I    + +QA+RI VN EIE L + L   E+ LK GG L ++S+HS
Sbjct: 183 DLLKPLLFKGKENKI--LAQIYQAIRIEVNQEIEVLKEFLLQTEEILKPGGRLSLISYHS 240

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDRLVK++  S   +    + M  + + P  F+ +   +++P++E++  N R+RSAKLR
Sbjct: 241 LEDRLVKRYIRSGLFEGEPEKDMYGNISVP--FKKVN-GLIIPSKEEIQQNNRARSAKLR 297

Query: 313 AGMR 316
              +
Sbjct: 298 VARK 301


>gi|283458388|ref|YP_003363012.1| putative S-adenosylmethionine-dependent methyltransferase [Rothia
           mucilaginosa DY-18]
 gi|283134427|dbj|BAI65192.1| predicted S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [Rothia mucilaginosa DY-18]
          Length = 354

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 116/317 (36%), Positives = 176/317 (55%), Gaps = 15/317 (4%)

Query: 20  HVPVLLEKVIALLNP--------APGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPF 69
           HVPV+L++ I LL P             ++D T G GG+S +  +   N+  I +DRD  
Sbjct: 37  HVPVMLDRCINLLAPGIERAVEERGTAYVIDGTLGMGGHSEALLERFENLVLIGIDRDLQ 96

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFS 126
           A +   E +  + E+F    A + ++   +     +G+DG++ DLGVSSMQ+D   RGF+
Sbjct: 97  AHAIAGERLARFGERFVPVHAVYDEIDRAMETAGVQGIDGILMDLGVSSMQLDERTRGFA 156

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           +    PLDMRM+    ++A  VVN+ +   L RI+   GEEK ASRIA AI   R +AP 
Sbjct: 157 YSYDAPLDMRMNSEDELTARIVVNEYSEDQLRRIIRNWGEEKFASRIARAICTARANAPL 216

Query: 186 QTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           +TT +L  +IQK V   ++    HPA R+FQALRI VN+E+E L + + +A +AL  GG 
Sbjct: 217 ETTGELVRIIQKAVPVAAQRTGGHPAKRTFQALRIEVNHELEALERAVPAALEALNLGGR 276

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
            + +S+HSLED++VK+   + +         +    H    + IT+    PT E++  N 
Sbjct: 277 FVAMSYHSLEDKIVKRALTAEATSKAPKGFPVELEEHKPTVKIITRGAEPPTDEEIEQNS 336

Query: 305 RSRSAKLRAGMRTVERS 321
           R+ SAKLRA  +    +
Sbjct: 337 RAASAKLRAAEKIRIPA 353


>gi|258404866|ref|YP_003197608.1| S-adenosyl-methyltransferase MraW [Desulfohalobium retbaense DSM
           5692]
 gi|257797093|gb|ACV68030.1| S-adenosyl-methyltransferase MraW [Desulfohalobium retbaense DSM
           5692]
          Length = 332

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 120/325 (36%), Positives = 174/325 (53%), Gaps = 10/325 (3%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRD 67
           + +   T   H  VLL +V+  L P PG   LD T G GG++ +  +   +  V+ LDRD
Sbjct: 8   TPSGIETRPLHQSVLLAEVLQALKPRPGGRYLDGTLGLGGHAEAILEHAPDSEVLGLDRD 67

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRG 124
             A+   +  +  + ++  + Q +FS+    +   G   VDG + DLGVSS+Q+D  +RG
Sbjct: 68  GAALDAAEARLDRFGDRVHMAQISFSRFVSALDQLGWETVDGALIDLGVSSLQLDSPERG 127

Query: 125 FSFQKSGPLDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           FSF   GPLDMRM        A  ++N+A+ + L RI+   GEE  A RIA  IV  R+ 
Sbjct: 128 FSFLHDGPLDMRMDSGMGVPPAKSLLNKASQETLRRIIRDYGEEPMAGRIAKRIVMTREK 187

Query: 183 APFQTTQDLSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
            P +TT  L+ ++++     +   +R HPAT++FQALRI VN E+EEL   L +    L 
Sbjct: 188 TPLETTLQLAHVVEQAYPAKRRAQSRNHPATKTFQALRIAVNKELEELEAFLEAIPDRLC 247

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQED 299
            GG L V+SFHSLEDR+VK      +      +   I    +    Q +TKK ++P+ E+
Sbjct: 248 VGGRLAVISFHSLEDRIVKHRLRREARGCRCPKEQPICVCGYRPRLQVLTKKPLLPSAEE 307

Query: 300 VAFNRRSRSAKLRAGMRTVERSIED 324
           +  N RSRSAKLR   R       D
Sbjct: 308 MEANSRSRSAKLRVAERIEPEYPHD 332


>gi|194099359|ref|YP_002002459.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae NCCP11945]
 gi|239999615|ref|ZP_04719539.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae 35/02]
 gi|240014790|ref|ZP_04721703.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae DGI18]
 gi|240017238|ref|ZP_04723778.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae FA6140]
 gi|240081125|ref|ZP_04725668.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae FA19]
 gi|240113337|ref|ZP_04727827.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae MS11]
 gi|240121313|ref|ZP_04734275.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae PID24-1]
 gi|240124146|ref|ZP_04737102.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae PID332]
 gi|260439867|ref|ZP_05793683.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae DGI2]
 gi|193934649|gb|ACF30473.1| S-adenosyl-methyltransferase [Neisseria gonorrhoeae NCCP11945]
 gi|317164866|gb|ADV08407.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 306

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 110/308 (35%), Positives = 165/308 (53%), Gaps = 10/308 (3%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRD 80
           +L + +  L      V +D TFG GG+SR           +I  D+DP A++  +E +  
Sbjct: 1   MLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFDKDPQAIAVAEE-LAR 59

Query: 81  YKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
             ++  +    F+  Q  +   G   VDG +FDLG+SS QID G RGFSF+   PLDMRM
Sbjct: 60  SDKRVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGSRGFSFRFDAPLDMRM 119

Query: 138 SCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
             + G+SA++ +  A+ +DL  ++   GEE+ + +I  AIV +R  +P  TT+ L+ ++ 
Sbjct: 120 DTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIVRAIVAQRAESPIDTTRKLAQIVA 179

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
           + V   +  +  PATR+FQA+RIF+N E+EE+   L      LK GG L V++FHSLEDR
Sbjct: 180 QNVRTRERGQ-DPATRTFQAIRIFINRELEEVGAVLPQVMCRLKEGGRLAVIAFHSLEDR 238

Query: 257 LVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           +VK+F    S             A  P     I  + + P + ++A N R+RSA LR   
Sbjct: 239 IVKQFVKKYSQHEPLPSWAAVREADLPEPPLKIVGRALKPGEAEIAANPRARSAVLRVAE 298

Query: 316 RTVERSIE 323
           RT     E
Sbjct: 299 RTAGPIPE 306


>gi|258593046|emb|CBE69357.1| S-adenosyl-dependent methyl transferase [NC10 bacterium 'Dutch
           sediment']
          Length = 301

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 119/308 (38%), Positives = 172/308 (55%), Gaps = 21/308 (6%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPFAVSCG 74
           G H+PVLLE+ +A L P PG   LDAT G GG++ +          +  +DRD  A++  
Sbjct: 5   GRHLPVLLEETVAFLQPRPGGCYLDATVGLGGHAETLLIESAPTGCLCGIDRDVEALALA 64

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +  +  +  +  L    F+ L     +      DG++FDLG SS Q+D   RGFSF + G
Sbjct: 65  KGRLGQFGSRVELRYGDFASLGAIAAENEWRPFDGILFDLGFSSFQMDNASRGFSFMRDG 124

Query: 132 PLDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            LDMRM   G   SA++++ +   ++L R+L   GEE+ A RIA  IV+ R++ P  +T 
Sbjct: 125 LLDMRMDRQGCDKSAAELLARIPERELARLLQDYGEERWAKRIAARIVEARRTQPLTSTA 184

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L+ L+   V       RIH ATR+FQALRI VN+E+  L +GL++A + L  GG + V+
Sbjct: 185 QLARLVAAAVPRRAWPRRIHVATRTFQALRIAVNDELARLRRGLQNAVELLAVGGRICVI 244

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDR+VK+ F   +               P   + +TK+ VVPT+ +   N R+RS
Sbjct: 245 SFHSLEDRIVKEVFRGWARS------------EPPRVRLLTKRPVVPTERESEINPRARS 292

Query: 309 AKLRAGMR 316
           AKLRA  R
Sbjct: 293 AKLRAAER 300


>gi|329848184|ref|ZP_08263212.1| S-adenosyl-methyltransferase MraW [Asticcacaulis biprosthecum C19]
 gi|328843247|gb|EGF92816.1| S-adenosyl-methyltransferase MraW [Asticcacaulis biprosthecum C19]
          Length = 317

 Score =  346 bits (889), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 132/312 (42%), Positives = 192/312 (61%), Gaps = 5/312 (1%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQ 75
               H+ VLL +V+ +L     K+I+D TFGAGGYSR+F   G+ V+A DRD       +
Sbjct: 3   EAAAHLSVLLPEVLTVLGNLEDKLIVDGTFGAGGYSRAFLLGGARVVAFDRDARVRPFVE 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              +++ ++F      FS++ + + + G    D +V D+GVSSMQ+D  DRGFSF + GP
Sbjct: 63  ALSQEFPDRFQWVNRCFSEMAEGLAELGHASCDAIVLDIGVSSMQLDEADRGFSFMRDGP 122

Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           LDMRMS  G SA+D+VN  +  D+  ++ + GEE ++  IA AIV+RR++ PF+ T DL+
Sbjct: 123 LDMRMSVDGRSAADIVNDDDKDDIAHVIWLYGEEHKSRSIASAIVRRREAQPFERTLDLA 182

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            ++++ +   +   +HPATR+FQALRI VN+E+ EL + L  AE  L+  G+L VV+FHS
Sbjct: 183 EVVERALGGRRGAPVHPATRTFQALRIAVNDELGELERALEVAEILLRPDGVLAVVTFHS 242

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNA--HPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           LEDR+VK FF  RSGK+       P        V+  IT K V  ++ ++A N RSRSAK
Sbjct: 243 LEDRIVKNFFNDRSGKMAGGSRHAPQKLATRTPVYTLITPKAVQASEAEIAGNPRSRSAK 302

Query: 311 LRAGMRTVERSI 322
           LRA  R    + 
Sbjct: 303 LRAVRRNRAPAG 314


>gi|318607135|emb|CBY28633.1| rrna small subunit methyltransferase H [Yersinia enterocolitica
           subsp. palearctica Y11]
          Length = 303

 Score =  346 bits (889), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 116/309 (37%), Positives = 173/309 (55%), Gaps = 19/309 (6%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRD 80
           +L++ +  LN     + +D TFG GG+SR           +IA+DRDP A+   +     
Sbjct: 1   MLDEAVNGLNIRDNGIYIDGTFGRGGHSRLILSQLGPEGCLIAIDRDPQAIKAAKSI--- 57

Query: 81  YKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
              +FS+    FS L  YV +      ++GV+ DLGVSS Q+D  +RGFSF + GPLDMR
Sbjct: 58  TDPRFSIVHGPFSDLAHYVRELDLVGRINGVLLDLGVSSPQLDDPERGFSFMRDGPLDMR 117

Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M  + GISA++ + +A+  D+  +L   GEE+ A R+A AIV+   + P   T++L+ LI
Sbjct: 118 MDPTRGISAAEWLMKASADDIAWVLKTFGEERFAKRLAKAIVECNLTQPMTRTKELADLI 177

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
                F + ++ HPATRSFQA+RI++N+E+EE+ + L  A + L   G L V+SFHSLED
Sbjct: 178 ANASPFREKHK-HPATRSFQAIRIYINSELEEIERALDGALEVLAPEGRLSVISFHSLED 236

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           R+VK F    S        +  + A          +S+ K  ++P   +VA N R+RS+ 
Sbjct: 237 RIVKNFIRHHSRGPQVPAGLPLTEAQLRSMGGRTLKSVGK--MMPPDAEVAENPRARSSV 294

Query: 311 LRAGMRTVE 319
           LR   R  E
Sbjct: 295 LRFAERIKE 303


>gi|255037275|ref|YP_003087896.1| S-adenosyl-methyltransferase MraW [Dyadobacter fermentans DSM
           18053]
 gi|254950031|gb|ACT94731.1| S-adenosyl-methyltransferase MraW [Dyadobacter fermentans DSM
           18053]
          Length = 305

 Score =  346 bits (889), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 104/310 (33%), Positives = 162/310 (52%), Gaps = 12/310 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFA 70
           +      HVPV+L + +  L   P  + +D TFG GG+SR+  +      ++  D+DP A
Sbjct: 1   MDSPSTYHVPVMLSECLEGLQIQPDGIYVDVTFGGGGHSRAILEKLTTGRLLVFDQDPDA 60

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSF 127
            S   E   D   +F+   A F  L+ Y+       V+G++ DLGVSS QI+  +RGFS 
Sbjct: 61  ASNALEFKDDQ--RFTFIPANFRHLKRYLKLNKAPLVNGILADLGVSSHQINTPERGFST 118

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           +    LDMRM+ +   +A +V+   +  +L RILG+ GE   A   A AI+  R ++  +
Sbjct: 119 RFDADLDMRMNPNIEKTAREVLKTRSAAELQRILGMYGEVTNARTAAEAIIAARYNSQIE 178

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T  DL  ++ +     + N+     + FQALRI VN+E+  L + L    + L   G L+
Sbjct: 179 TVNDLKGILMRYAPKHRENK--YFAQVFQALRIEVNDELAVLEEFLAQVPEVLAPDGRLV 236

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+S+HSLEDRLVK +           +    +   P   +S+T+K +  T E++A N R+
Sbjct: 237 VMSYHSLEDRLVKNYIQKGKFYGEVEKDFYGNEIKP--LKSVTRKPIEATAEEIAVNPRA 294

Query: 307 RSAKLRAGMR 316
           RSAKLR   +
Sbjct: 295 RSAKLRIAEK 304


>gi|240116316|ref|ZP_04730378.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae PID18]
 gi|240118603|ref|ZP_04732665.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae PID1]
 gi|240128816|ref|ZP_04741477.1| S-adenosyl-methyltransferase MraW [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 306

 Score =  346 bits (889), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 110/308 (35%), Positives = 165/308 (53%), Gaps = 10/308 (3%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRD 80
           +L + +  L      V +D TFG GG+SR           +I  D+DP A++  +E +  
Sbjct: 1   MLNEAVDALAVREDGVYVDGTFGRGGHSRLILSRLGDAGRLIVFDKDPQAIAVAEE-LAR 59

Query: 81  YKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
             ++  +    F+  Q  +   G   VDG +FDLG+SS QID G RGFSF+   PLDMRM
Sbjct: 60  SDKRVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGSRGFSFRFDAPLDMRM 119

Query: 138 SCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
             + G+SA++ +  A+ +DL  ++   GEE+ + +I  AIV +R  +P  TT+ L+ ++ 
Sbjct: 120 DTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIVRAIVAQRAESPIDTTRKLAQIVA 179

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
           + V   +  +  PATR+FQA+RIF+N E+EE+   L      LK GG L V++FHSLEDR
Sbjct: 180 QNVRTRERGQ-DPATRTFQAIRIFINRELEEVGAVLPQVMCRLKEGGRLAVIAFHSLEDR 238

Query: 257 LVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           +VK+F    S             A  P     I  + + P + ++A N R+RSA LR   
Sbjct: 239 IVKQFVKKYSQHEPLPSWAAVREADLPDPPLKIVGRALKPGEAEIAANPRARSAVLRVAE 298

Query: 316 RTVERSIE 323
           RT     E
Sbjct: 299 RTAGPIPE 306


>gi|298372234|ref|ZP_06982224.1| S-adenosyl-methyltransferase MraW [Bacteroidetes oral taxon 274
           str. F0058]
 gi|298275138|gb|EFI16689.1| S-adenosyl-methyltransferase MraW [Bacteroidetes oral taxon 274
           str. F0058]
          Length = 297

 Score =  346 bits (889), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 104/305 (34%), Positives = 163/305 (53%), Gaps = 17/305 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           HVPVLLE+ I  L   P  V +D TFG GG+SR+      N   +   D+D  A     +
Sbjct: 3   HVPVLLEESIECLRIKPDGVYVDCTFGGGGHSRAILARLGNKGKLYGFDQDREAYRNTTD 62

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                 E+F+  +  F  + +++   G   VDG++ DLGVSS   D  +RGFS++  G L
Sbjct: 63  -----DERFTFVRGNFKYISNFLRYYGEDKVDGILADLGVSSHHFDEAERGFSYRFDGTL 117

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+     +A +++N  + + L  IL + GE + A RIA+AIV RRQ+   +T  +L+
Sbjct: 118 DMRMNREASFTAEELINGYDEQALADILYLYGELRNARRIANAIVCRRQTKAIKTIFELT 177

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +++     +K          FQA+RI VN E++ L   L  +   L++GG + V+S+HS
Sbjct: 178 EVLRPFC--TKGKEYKELAPIFQAIRIEVNAELDSLKTLLCRSVDLLRSGGRIAVISYHS 235

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDRLVK F  + +      +    +   P  F +++ K +V    ++A N R+RSA+LR
Sbjct: 236 LEDRLVKNFLKTGNFGGEPQKDFYGNQITP--FANVS-KAIVSNDREIADNPRARSARLR 292

Query: 313 AGMRT 317
              + 
Sbjct: 293 YAEKI 297


>gi|134294639|ref|YP_001118374.1| S-adenosyl-methyltransferase MraW [Burkholderia vietnamiensis G4]
 gi|263446940|sp|A4JB86|RSMH_BURVG RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|134137796|gb|ABO53539.1| S-adenosyl-methyltransferase MraW [Burkholderia vietnamiensis G4]
          Length = 313

 Score =  346 bits (888), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 115/311 (36%), Positives = 178/311 (57%), Gaps = 19/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  + +D TFG GG+SR+       G  +IA D+DP A+    +
Sbjct: 7   HRTVLLDEAVDSLVTRPDGIYVDGTFGRGGHSRAVLARLAPGGRLIAFDKDPRAIETA-Q 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + D   +FS+   +F+ ++D +  +GV    GV+ DLGVSS Q+D   RGFSF+  GPL
Sbjct: 66  RIEDA--RFSIVHDSFASMRDALAARGVEKVSGVLLDLGVSSPQVDDPARGFSFRADGPL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS----APFQTT 188
           DMRM  + G SA++ + +A+V++LT ++   GEE+ A +IA A+V RR       P  TT
Sbjct: 124 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDTT 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ ++   V   +     PATR+FQA+RI VN E+ +L   L +A   L+ GG L+V+
Sbjct: 184 GELAQIVGHVVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVI 242

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           SFHSLEDR+VK+F  + +      R +     +      + I++    P++ +VA N R+
Sbjct: 243 SFHSLEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPPLKIISR--QFPSEAEVAANPRA 300

Query: 307 RSAKLRAGMRT 317
           RSA +R   R 
Sbjct: 301 RSAVMRIAERV 311


>gi|145223567|ref|YP_001134245.1| S-adenosyl-methyltransferase MraW [Mycobacterium gilvum PYR-GCK]
 gi|145216053|gb|ABP45457.1| S-adenosyl-methyltransferase MraW [Mycobacterium gilvum PYR-GCK]
          Length = 371

 Score =  346 bits (888), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 117/310 (37%), Positives = 172/310 (55%), Gaps = 10/310 (3%)

Query: 18  GDHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVS 72
             HVPVLL++ + LL P     G  ++DAT GAGG+S  F        +I LDRDP A+ 
Sbjct: 59  QPHVPVLLDRCVELLAPALTREGATLVDATLGAGGHSERFLTDFPGLRLIGLDRDPDALR 118

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQK 129
              E +  + ++ +L +  +  + D V D     VD ++FDLGVSSMQ+D  +RGFS+  
Sbjct: 119 IAGERLAPFADRITLVRTRYDGIADAVRDAAGGSVDAILFDLGVSSMQLDRVERGFSYST 178

Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM   + ++A+ V+N  + + L R+L   GEEK A RIA  IV+RR   PF TT
Sbjct: 179 DAPLDMRMDSGADLTAAQVLNSYDERALARVLREYGEEKFAGRIAAFIVRRRAVTPFTTT 238

Query: 189 QDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L  L+   +   ++    HPA R+FQALRI VN E+E L   + +A +AL+  G L V
Sbjct: 239 GELVELLYDAIPAPARRTGGHPAKRTFQALRIEVNAELESLRSAIPAALQALRPHGRLAV 298

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +++ SLEDR+VK  FA+ +         +    H   F ++T+       E++  N RS 
Sbjct: 299 MAYQSLEDRIVKTAFAAATASRTPPGLPVELPGHGPEFVALTRGAERADAEEIERNPRSA 358

Query: 308 SAKLRAGMRT 317
             +LRA  + 
Sbjct: 359 PVRLRAVEKV 368


>gi|289766581|ref|ZP_06525959.1| methyltransferase [Fusobacterium sp. D11]
 gi|289718136|gb|EFD82148.1| methyltransferase [Fusobacterium sp. D11]
          Length = 314

 Score =  346 bits (888), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 106/308 (34%), Positives = 172/308 (55%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+PVL  + +  L   P  + +D T G G +S    +  S+   +I++D+D  A+   ++
Sbjct: 9   HIPVLYYETLDNLVINPDGIYIDCTLGGGSHSEGILERLSDKGLLISIDQDINAIEYSKK 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  +  ++ +F+  F  +       GVD   G++ D+GVSS Q+D  +RGFS++    L
Sbjct: 69  RLEKFGSKWKVFKGNFENIDTIAYMAGVDKVDGILMDIGVSSKQLDDPERGFSYRYDVKL 128

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+    ISA DVVN  + + L++I+   GEE+ A +IA  I++ R+S+P + T DL 
Sbjct: 129 DMRMNTEQKISAYDVVNTYSEEQLSKIIFEYGEERHARKIAKLILEERKSSPIEKTSDLI 188

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +LI++     +    HPA ++FQA+RI VN E+E L   +  A + LK GG L +++FHS
Sbjct: 189 TLIKRAYP--ERASKHPAKKTFQAIRIEVNRELEVLENAISKAAELLKVGGRLAIITFHS 246

Query: 253 LEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK  F   +      +   I        F+ ITKK ++P   ++  N RS S+KL
Sbjct: 247 LEDRIVKNKFKDLATACKCPKDIPICVCGGVKKFEIITKKPIIPIDNELKNNNRSHSSKL 306

Query: 312 RAGMRTVE 319
           R   R ++
Sbjct: 307 RILERILD 314


>gi|238026124|ref|YP_002910355.1| S-adenosyl-methyltransferase MraW [Burkholderia glumae BGR1]
 gi|237875318|gb|ACR27651.1| S-adenosyl-methyltransferase MraW [Burkholderia glumae BGR1]
          Length = 313

 Score =  346 bits (888), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 116/316 (36%), Positives = 180/316 (56%), Gaps = 19/316 (6%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72
           T   H  VLL++ +  L   P  V +D TFG GG+SR+       G  +IA D+DP A++
Sbjct: 3   TEFQHRTVLLDEAVDALVTRPDGVYVDGTFGRGGHSRAVLARLAEGGRLIAFDKDPLAIA 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQK 129
             Q+       +FS+   +F+ L   + ++GV    GV+ DLGVSS QID  +RGFSF+ 
Sbjct: 63  TAQQIA---DPRFSIVHDSFASLGGALAERGVARVTGVLLDLGVSSPQIDDPERGFSFRA 119

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS----AP 184
           +GPLDMRM  + G SA+D + +A++++LT ++   GEE+ A +IA A+V RR+      P
Sbjct: 120 NGPLDMRMDTTRGESAADWLARASLQELTEVIRDYGEERFAFQIAKALVARREESDRLGP 179

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
             +T +L+ ++   V   +     PATR+FQA+RI VN E+ +L   L +A  +L+ GG 
Sbjct: 180 LDSTGELAQIVGHAVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLGAALSSLEQGGR 238

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDVAF 302
           L+V+SFHSLEDR+VK+F  + +      R +     +      + + +K   P+  +V  
Sbjct: 239 LVVISFHSLEDRIVKRFLQTHASAPAVDRRLPIRAVDLPSPPLKLLGRK--FPSDAEVDA 296

Query: 303 NRRSRSAKLRAGMRTV 318
           N R+RSA +R   R  
Sbjct: 297 NPRARSAVMRIAERVA 312


>gi|254446788|ref|ZP_05060263.1| S-adenosyl-methyltransferase MraW [Verrucomicrobiae bacterium
           DG1235]
 gi|198256213|gb|EDY80522.1| S-adenosyl-methyltransferase MraW [Verrucomicrobiae bacterium
           DG1235]
          Length = 305

 Score =  346 bits (887), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 112/302 (37%), Positives = 166/302 (54%), Gaps = 5/302 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQETM 78
           HVPVL  + +  L P+ G + LD TFG GG++    +     V+ALD+DP AV+   E  
Sbjct: 4   HVPVLAAETLEHLAPSDGGLYLDCTFGGGGHTELVLEAANCTVVALDQDPAAVARAAELK 63

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138
             Y ++    +  F  L   + +   DG++FD GVSS Q+D  DRGFSF+   PLDMRM 
Sbjct: 64  ERYGDRLRFHRMNFETLDQ-LEEGPFDGILFDFGVSSFQLDEVDRGFSFRGEAPLDMRMD 122

Query: 139 C-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK 197
             SG+SA+  +  A+  DL R +    EEK   +I +AI+  R+     TT  L+ LI  
Sbjct: 123 PESGVSAAQWLATADQADLLRAIRGYAEEKNWRKIVNAILAAREKNELSTTTQLADLILS 182

Query: 198 TVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
                    +++HPAT+ FQ +RI +N+EI  + +GL +A   LK GG+L  +SFHSLED
Sbjct: 183 CTPARVRFNSKLHPATKVFQGIRIAINDEIGVIERGLPAAFDKLKTGGILCAISFHSLED 242

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           R+ K  +   +G+    R   P +      + + K+ +  + ++VA N RSRSAKLR   
Sbjct: 243 RVAKVLYRRWAGRPEGSRDNRPQDMRVTRAELLGKRPITASDKEVAVNPRSRSAKLRVLK 302

Query: 316 RT 317
           + 
Sbjct: 303 KI 304


>gi|298207891|ref|YP_003716070.1| S-adenosyl-methyltransferase mraW [Croceibacter atlanticus
           HTCC2559]
 gi|83850532|gb|EAP88400.1| S-adenosyl-methyltransferase mraW [Croceibacter atlanticus
           HTCC2559]
          Length = 298

 Score =  346 bits (887), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 105/304 (34%), Positives = 163/304 (53%), Gaps = 17/304 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H PVLL + +  LN  P  V +D TFG GG+S+           + A D+D  A+    E
Sbjct: 4   HNPVLLHETVDGLNIKPDGVYVDVTFGGGGHSKEILNRLGPNGKLFAFDQDQDALENALE 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                 ++F+L    F   + +V  +G   VDG++ D GVSS Q D  +RGFS +    L
Sbjct: 64  -----DDRFTLIPQNFRYAKRFVRVQGYKTVDGILGDFGVSSHQFDVAERGFSTRFDSRL 118

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+ +  +SA +VVN      L ++L   GE + A ++A AI   R+  P +T++ L 
Sbjct: 119 DMRMNQNDALSAYEVVNTYEEGKLRQVLSQYGELRNAPKLARAIYGARKDTPIETSEHLK 178

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I   +   K +++    + +QA+RI VN E+E L + L+  E  L  GG L ++S+HS
Sbjct: 179 EVINSFLPRGKEHKM--LAQIYQAIRIEVNQELEVLKEFLKQTEDMLTTGGRLSLISYHS 236

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDRLVK++  S   +    +    +   P  F+ +  K++VP  +++A N R+RSAKLR
Sbjct: 237 LEDRLVKRYIRSGLFEGEPEKDFYGNIEVP--FKKV-GKLIVPNAKEIATNNRARSAKLR 293

Query: 313 AGMR 316
              R
Sbjct: 294 VAER 297


>gi|258542962|ref|YP_003188395.1| S-adenosyl-methyltransferase MraW [Acetobacter pasteurianus IFO
           3283-01]
 gi|256634040|dbj|BAI00016.1| methytransferase MraW [Acetobacter pasteurianus IFO 3283-01]
 gi|256637100|dbj|BAI03069.1| methytransferase MraW [Acetobacter pasteurianus IFO 3283-03]
 gi|256640152|dbj|BAI06114.1| methytransferase MraW [Acetobacter pasteurianus IFO 3283-07]
 gi|256643209|dbj|BAI09164.1| methytransferase MraW [Acetobacter pasteurianus IFO 3283-22]
 gi|256646264|dbj|BAI12212.1| methytransferase MraW [Acetobacter pasteurianus IFO 3283-26]
 gi|256649317|dbj|BAI15258.1| methytransferase MraW [Acetobacter pasteurianus IFO 3283-32]
 gi|256652303|dbj|BAI18237.1| methytransferase MraW [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655361|dbj|BAI21288.1| methytransferase MraW [Acetobacter pasteurianus IFO 3283-12]
          Length = 335

 Score =  346 bits (887), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 137/325 (42%), Positives = 188/325 (57%), Gaps = 15/325 (4%)

Query: 6   CKTMSSAIH-HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIA 63
              +SS  H  T   H+PV+L +V+  L+PA G+ ILD TFG GGYS +  K    NV  
Sbjct: 1   MNALSSFSHPETAQGHIPVMLAEVLEYLHPADGERILDCTFGGGGYSSAILKSADCNVWG 60

Query: 64  LDRDPFAVSCGQETMRDY-----KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSS 115
           +DRDP A++ GQ   R +       +  L Q +F  +       G+   DG+V DLGVSS
Sbjct: 61  IDRDPDAIARGQVLSRTFPTADGGSRLHLLQGSFGNMLALASAAGISTFDGIVLDLGVSS 120

Query: 116 MQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175
            Q+D  DRGFSF+  GPLDMRM  SG SA+D+VN+A   +L  I    GEE+ A R+A A
Sbjct: 121 FQLDEADRGFSFRMEGPLDMRMEKSGPSAADIVNKAPEAELADIFHFYGEERHARRLARA 180

Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           +V  R  APFQTT  L+ L++  +   + + I  ATR+FQ LRI VN+E+ E+ +GL  A
Sbjct: 181 VVNARSEAPFQTTTQLADLVRSVIPKDR-SGIDSATRAFQGLRIAVNDELGEIERGLEQA 239

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP----SNAHPAVFQSITKK 291
              L  GG L+VVSFHSLEDR+ K+     +GK  +     P    + A    F ++T K
Sbjct: 240 LDMLAPGGRLVVVSFHSLEDRIAKRMVQHATGKDKSFSRYDPRAAGTPAPETDFVALTHK 299

Query: 292 VVVPTQEDVAFNRRSRSAKLRAGMR 316
              P+  + + N R+RSA+LRA M+
Sbjct: 300 ARRPSDTECSHNPRARSARLRAVMK 324


>gi|323341698|ref|ZP_08081931.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322464123|gb|EFY09316.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 303

 Score =  346 bits (887), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 106/305 (34%), Positives = 172/305 (56%), Gaps = 10/305 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76
            H+ V+L + I LLN  P  + +DAT GAGG+S   CK      +I  D+D  A+    +
Sbjct: 2   KHISVMLNETIELLNINPEGIYVDATLGAGGHSYEICKQLTTGRLIGFDKDLDAIERTSK 61

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  + ++ ++   +++QL + + + G   VDGV+FDLGVSS Q D  +RGFS++    L
Sbjct: 62  RLEVFGDKVTMVHGSYTQLTEKLNELGIDEVDGVLFDLGVSSPQFDDAERGFSYRFDSRL 121

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  +  +SA +VVN+   + L +IL    +E+ A RI   I++ R   P +TT +L 
Sbjct: 122 DMRMDQTQALSAYEVVNEYEEEHLVQILKDNSDERYARRIVKNIIENR---PVETTFELV 178

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            LI+++       + HPA ++FQALRI VNNE EE+   +  A   +K GG ++V++FHS
Sbjct: 179 ELIKRSYPGKDLKKGHPAKKTFQALRIEVNNEFEEVKDAVEQAVHVIKPGGRVVVITFHS 238

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           +EDR+VK+ F++          +         ++ ++ K +  + E++ FN R+ SA LR
Sbjct: 239 IEDRIVKRIFSNYGKPKKVDPRLPIIEEQVLNYKLVS-KALKASTEELEFNNRAHSAILR 297

Query: 313 AGMRT 317
              R 
Sbjct: 298 GIERV 302


>gi|21220572|ref|NP_626351.1| S-adenosyl-methyltransferase MraW [Streptomyces coelicolor A3(2)]
 gi|289772183|ref|ZP_06531561.1| methylase MraW [Streptomyces lividans TK24]
 gi|20139275|sp|Q9S2W4|RSMH_STRCO RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|5689964|emb|CAB52001.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)]
 gi|289702382|gb|EFD69811.1| methylase MraW [Streptomyces lividans TK24]
          Length = 310

 Score =  346 bits (887), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 119/306 (38%), Positives = 180/306 (58%), Gaps = 10/306 (3%)

Query: 24  LLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETM 78
           +L++ + LL PA   PG V++D T G GG+S +  +      ++ALDRD  A+    E +
Sbjct: 2   MLQRCLDLLAPALQEPGAVVVDCTLGLGGHSEALLERFPEARLVALDRDKEALRLSGERL 61

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
             Y  + +L  A + +L D +   GV    GV+FDLGVSSMQ+D  DRGF++ +  PLDM
Sbjct: 62  APYGGRATLVHAVYDELPDVLDRLGVPRVQGVLFDLGVSSMQLDEADRGFAYAQDAPLDM 121

Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM  S G+SA++V+N     +L RIL   GEEKQA RI  A+V+ R+  PF  +  L  L
Sbjct: 122 RMDQSTGMSAAEVLNTYPPGELVRILRAYGEEKQAKRIVSAVVREREKEPFTNSARLVEL 181

Query: 195 IQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           I+  +   +K    +PA R+FQALRI VN E+  L + + +A +++  GG + V+S+HSL
Sbjct: 182 IRAALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVESVAVGGRIAVLSYHSL 241

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           EDRLVK+ FA+ +         +    +    + +T+   +PT+E++A NRR+  A+LR 
Sbjct: 242 EDRLVKQVFAAGAANTAPPGLPVVPEQYAPRLKLLTRGAELPTEEEIAENRRAAPARLRG 301

Query: 314 GMRTVE 319
             R  E
Sbjct: 302 AERIRE 307


>gi|288958915|ref|YP_003449256.1| S-adenosyl-methyltransferase [Azospirillum sp. B510]
 gi|288911223|dbj|BAI72712.1| S-adenosyl-methyltransferase [Azospirillum sp. B510]
          Length = 324

 Score =  346 bits (887), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 132/292 (45%), Positives = 177/292 (60%), Gaps = 7/292 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78
           H+PVLL++VIA L P  G + +D TFGAGGYSR+  +  S  VI +DRDP A+  G+   
Sbjct: 7   HIPVLLDEVIAALAPRDGALYVDGTFGAGGYSRALLRSASCRVIGIDRDPAAIERGRVLA 66

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           +++  +  + +  F  +   +   GVD   GV  D+GVSS QID  +RGFSF+  GPLDM
Sbjct: 67  QEFPGRLDVIEGRFGDMDQLLARHGVDRVDGVALDVGVSSPQIDEPERGFSFRFDGPLDM 126

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RM   G +A+DVVN A+  +L  IL  LGEE+ A R+A AIV  R+ AP + T  L+ +I
Sbjct: 127 RMGRDGPTAADVVNGADEGELADILYHLGEERMARRVARAIVAARREAPIERTARLADII 186

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           +  V   K + I PATRSFQALRI VN+E+ EL +GL +AE  L  GG L VVSFHSLED
Sbjct: 187 RSVVPKGKGDGIDPATRSFQALRIHVNDELGELRRGLSAAESLLAPGGRLAVVSFHSLED 246

Query: 256 RLVKKFFASRSGKVMAVRHMIPSN---AHPAVFQSITKKVVVPTQEDVAFNR 304
           R VK F   RS    +     P     AH   F+ +++K V P++ +   N 
Sbjct: 247 REVKAFLRERSSPPPSPSRHTPVTAVAAHHPSFRLLSRKPVDPSEAEARNNP 298


>gi|237743305|ref|ZP_04573786.1| methyltransferase [Fusobacterium sp. 7_1]
 gi|229433084|gb|EEO43296.1| methyltransferase [Fusobacterium sp. 7_1]
          Length = 314

 Score =  346 bits (887), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 105/308 (34%), Positives = 171/308 (55%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+PVL  + +  L   P  + +D T G G +S    +  S+   +I++D+D  A+   ++
Sbjct: 9   HIPVLYYETLDNLVINPDGIYIDCTLGGGSHSEGILERLSDKGLLISIDQDSTAIEYSKK 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  +  ++ +F+  F  +       GVD   G++ D+GVSS Q+D   RGFS++    L
Sbjct: 69  RLEKFGSKWKVFKGNFENIDTIAYTAGVDKVDGILMDIGVSSKQLDDPKRGFSYRYDVKL 128

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+    ISA D+VN    + L++I+   GEE+ A +IA  IV+ R+S+P + T DL 
Sbjct: 129 DMRMNTDQKISAYDIVNTYTEEQLSKIIFEYGEERHARKIAKLIVEERKSSPIEKTSDLI 188

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +LI++     +    HPA ++FQA+RI VN E+E L   +  A + LK GG L +++FHS
Sbjct: 189 TLIKRAYP--ERASKHPAKKTFQAIRIEVNRELEVLGNAISKAAELLKVGGRLAIITFHS 246

Query: 253 LEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK  F   +      +   I        F+ ITKK ++P  +++  N R+ S+KL
Sbjct: 247 LEDRIVKNKFKDLATACKCPKDIPICVCGGVKKFEIITKKPIIPIDDELKNNNRAHSSKL 306

Query: 312 RAGMRTVE 319
           R   R ++
Sbjct: 307 RILERILD 314


>gi|188584364|ref|YP_001927809.1| S-adenosyl-methyltransferase MraW [Methylobacterium populi BJ001]
 gi|263456461|sp|B1Z8U3|RSMH_METPB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|179347862|gb|ACB83274.1| S-adenosyl-methyltransferase MraW [Methylobacterium populi BJ001]
          Length = 351

 Score =  346 bits (887), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 139/306 (45%), Positives = 186/306 (60%), Gaps = 8/306 (2%)

Query: 38  KVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95
            + +D TFGAGGY+R+  + G    VIA+DRDP A+  G + +     +  L Q  F  L
Sbjct: 38  GLAVDGTFGAGGYTRALLESGPDMRVIAIDRDPTAIRAGADLVEGAGGRLRLVQGRFGDL 97

Query: 96  QDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQAN 152
              + D+G    D VV D+GVSSMQ+D   RGFSF++ GPLDMRM   G SA+D+VN   
Sbjct: 98  DTLLADQGEAQADWVVLDIGVSSMQLDEAHRGFSFRQDGPLDMRMGGEGPSAADLVNGEE 157

Query: 153 VKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATR 212
              L  IL   GEE+++  +A AIV+ R+ AP  TT  L+ LI   V     + IHPATR
Sbjct: 158 ESTLADILYHFGEERRSRAVARAIVEARRRAPIATTAQLADLIAGVVRPEPGSPIHPATR 217

Query: 213 SFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAV 272
           SFQ LRI VN+E+ EL +GL +AE+ LK GG L VV+FHSLEDR+VK+FF++RSG+    
Sbjct: 218 SFQGLRIAVNDELGELVRGLHAAERVLKPGGRLAVVTFHSLEDRIVKQFFSARSGRAAQA 277

Query: 273 RHMIPSNAHPAV--FQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDDSFVH- 329
              +P    PA   F+ +TK  V+P++ +   N R+RSAKLRAG RT   +    S +  
Sbjct: 278 SRHLPGVERPAPKSFRLVTKGPVLPSEAETEVNPRARSAKLRAGERTDGPAPPPLSAIET 337

Query: 330 LPRLPT 335
           L  LP 
Sbjct: 338 LASLPA 343


>gi|256788289|ref|ZP_05526720.1| hypothetical protein SlivT_27704 [Streptomyces lividans TK24]
          Length = 309

 Score =  346 bits (887), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 119/306 (38%), Positives = 180/306 (58%), Gaps = 10/306 (3%)

Query: 24  LLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETM 78
           +L++ + LL PA   PG V++D T G GG+S +  +      ++ALDRD  A+    E +
Sbjct: 1   MLQRCLDLLAPALQEPGAVVVDCTLGLGGHSEALLERFPEARLVALDRDKEALRLSGERL 60

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
             Y  + +L  A + +L D +   GV    GV+FDLGVSSMQ+D  DRGF++ +  PLDM
Sbjct: 61  APYGGRATLVHAVYDELPDVLDRLGVPRVQGVLFDLGVSSMQLDEADRGFAYAQDAPLDM 120

Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM  S G+SA++V+N     +L RIL   GEEKQA RI  A+V+ R+  PF  +  L  L
Sbjct: 121 RMDQSTGMSAAEVLNTYPPGELVRILRAYGEEKQAKRIVSAVVREREKEPFTNSARLVEL 180

Query: 195 IQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           I+  +   +K    +PA R+FQALRI VN E+  L + + +A +++  GG + V+S+HSL
Sbjct: 181 IRAALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVESVAVGGRIAVLSYHSL 240

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           EDRLVK+ FA+ +         +    +    + +T+   +PT+E++A NRR+  A+LR 
Sbjct: 241 EDRLVKQVFAAGAANTAPPGLPVVPEQYAPRLKLLTRGAELPTEEEIAENRRAAPARLRG 300

Query: 314 GMRTVE 319
             R  E
Sbjct: 301 AERIRE 306


>gi|161344767|ref|NP_440820.2| S-adenosyl-methyltransferase MraW [Synechocystis sp. PCC 6803]
          Length = 297

 Score =  346 bits (887), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 123/323 (38%), Positives = 177/323 (54%), Gaps = 35/323 (10%)

Query: 4   KSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV-- 61
            + K  + A  H    HV VL   ++  L P PG   LDAT GAGG+S    K+G  +  
Sbjct: 1   MNLKQTAIADFH----HVSVLPTALVEGLEPKPGGYYLDATVGAGGHSERLLKLGIPLAL 56

Query: 62  IALDRDPFAVSCGQETMRDY-KEQ----FSLFQATFSQLQDYVPDKGVDGVVFDLGVSSM 116
             +DRD  A++   E ++    ++     + +Q  F+     +     DG++ DLGVSS 
Sbjct: 57  TMIDRDVQAIAAAMERLQPLVADRKDISINTWQGNFADFPGQLEQ--FDGIIADLGVSSP 114

Query: 117 QIDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175
           Q+D GDRGFSF+ + PLDMRM  S  ++A++++N  + KDL RI    GEE+ + RIA  
Sbjct: 115 QLDQGDRGFSFRHTAPLDMRMDQSQDLTAAEIINHWSEKDLARIFYEYGEERLSRRIARQ 174

Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234
           IV++R   PFQTT DL+  I K V    ++ RIHPATR+FQ LRI VN+E+  L + +  
Sbjct: 175 IVEQR---PFQTTTDLAEAITKWVPGKYRHGRIHPATRTFQGLRIAVNDELGSLEKFIAQ 231

Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVV 294
           A   LK+GG   ++SFHSLEDR+VK  F                       + +TKK ++
Sbjct: 232 APHWLKSGGKFGIISFHSLEDRIVKHRFRETEN-----------------LRVLTKKPII 274

Query: 295 PTQEDVAFNRRSRSAKLRAGMRT 317
             +E+   N R+RSAKLR   + 
Sbjct: 275 AGEEEQRQNPRARSAKLRWAEKI 297


>gi|301063241|ref|ZP_07203790.1| S-adenosyl-methyltransferase MraW [delta proteobacterium NaphS2]
 gi|300442669|gb|EFK06885.1| S-adenosyl-methyltransferase MraW [delta proteobacterium NaphS2]
          Length = 341

 Score =  345 bits (886), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 98/314 (31%), Positives = 166/314 (52%), Gaps = 10/314 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPF 69
           I  +   HVPVLL++ +  LN  P  + +D T G+GG+S            ++ LD+DP 
Sbjct: 27  IQTSNYPHVPVLLQEAVRYLNLKPEGIYVDGTVGSGGHSMEILSHLPENSSLVCLDQDPD 86

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFS 126
           A+   ++ +R    +     A F+ L      +    +DG++ DLG+SS QI+   RGFS
Sbjct: 87  AIRLSRKRLRS-DNRVQFIHANFADLGRVMQDLAINRIDGILLDLGMSSYQIEKSGRGFS 145

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           F +  PLDMRM+     +  D++N  +++ L  +L   GEE++   +A AIV+ R+    
Sbjct: 146 FSREEPLDMRMNPDHKPTGMDLINSLSLESLQALLREYGEEQKFKTLARAIVRARERETI 205

Query: 186 QTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           +T   L+ +I++    S +  + HPAT++FQA+RI +N E+E L   L+     +  GG 
Sbjct: 206 KTASQLAHIIEEATPKSHRPWKRHPATKTFQAVRIAINKEMESLETFLQEIPSLMAVGGR 265

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
           L+V+S+HSLEDR +K+                + +     +F+ + K+ + P + ++ FN
Sbjct: 266 LVVISYHSLEDRQIKRAMVQWEKTCTCPPDFPVCACQKTRIFKRVFKRGLKPDEREIHFN 325

Query: 304 RRSRSAKLRAGMRT 317
            R+RSA +R   R 
Sbjct: 326 PRARSAIMRVAERI 339


>gi|83312939|ref|YP_423203.1| S-adenosyl-methyltransferase MraW [Magnetospirillum magneticum
           AMB-1]
 gi|123540765|sp|Q2W0I1|RSMH_MAGSA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|82947780|dbj|BAE52644.1| S-adenosyl-methyltransferase mraW [Magnetospirillum magneticum
           AMB-1]
          Length = 318

 Score =  345 bits (886), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 131/300 (43%), Positives = 182/300 (60%), Gaps = 8/300 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCG 74
           +   H+PVLL +VIA L P    V LD TFGAGGYSR+        V A+DRDP AV+ G
Sbjct: 2   SPQPHIPVLLAEVIAALAPRNDGVYLDGTFGAGGYSRAILAASACRVWAIDRDPTAVARG 61

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +        +FS+ +  F  +   +  +GV   DG+  D+GVSSMQID  +RGFSF K G
Sbjct: 62  KLLEEGSAGRFSMIEGRFGDMDSLLRQQGVNQVDGIALDIGVSSMQIDQPERGFSFAKDG 121

Query: 132 PLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           PLDMRM   G SA+D+VN     +L  I+   GEE+ + R+A AIV+ R+   F+ T +L
Sbjct: 122 PLDMRMETKGPSAADMVNDTPETELANIIYRYGEERLSRRVAKAIVEARRLKRFERTGEL 181

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + +++K V  S  + I PATR+FQALRI VN+E+ EL +GL +AE+ L  GG L VV+FH
Sbjct: 182 AEVVRKVVPRS-GDGIDPATRTFQALRIAVNDELGELERGLEAAERLLAPGGHLAVVTFH 240

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPS---NAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SLEDR+VK F  +RSG+       +P    +   A F  +++K + P  ++   N R+RS
Sbjct: 241 SLEDRVVKSFLKARSGEAARPSRHVPQAQGSGPAASFALLSRKAIGPAPDEARANPRARS 300


>gi|315443914|ref|YP_004076793.1| S-adenosyl-methyltransferase MraW [Mycobacterium sp. Spyr1]
 gi|315262217|gb|ADT98958.1| S-adenosyl-methyltransferase MraW [Mycobacterium sp. Spyr1]
          Length = 353

 Score =  345 bits (886), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 117/310 (37%), Positives = 172/310 (55%), Gaps = 10/310 (3%)

Query: 18  GDHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVS 72
             HVPVLL++ + LL P     G  ++DAT GAGG+S  F        +I LDRDP A+ 
Sbjct: 41  QPHVPVLLDRCVELLAPALTREGATLVDATLGAGGHSERFLTDFPGLRLIGLDRDPDALR 100

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQK 129
              E +  + ++ +L +  +  + D V D     VD ++FDLGVSSMQ+D  +RGFS+  
Sbjct: 101 IAGERLAPFADRITLVRTRYDGIADAVRDAAGGSVDAILFDLGVSSMQLDRVERGFSYST 160

Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM   + ++A+ V+N  + + L R+L   GEEK A RIA  IV+RR   PF TT
Sbjct: 161 DAPLDMRMDSGADLTAAQVLNSYDERALARVLREYGEEKFAGRIAAFIVRRRAVTPFTTT 220

Query: 189 QDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L  L+   +   ++    HPA R+FQALRI VN E+E L   + +A +AL+  G L V
Sbjct: 221 GELVELLYDAIPAPARRTGGHPAKRTFQALRIEVNAELESLRSAIPAALQALRPHGRLAV 280

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +++ SLEDR+VK  FA+ +         +    H   F ++T+       E++  N RS 
Sbjct: 281 MAYQSLEDRIVKTAFAAATASRTPPGLPVELPGHGPEFVALTRGAERADAEEIERNPRSA 340

Query: 308 SAKLRAGMRT 317
             +LRA  + 
Sbjct: 341 PVRLRAVEKV 350


>gi|120404503|ref|YP_954332.1| S-adenosyl-methyltransferase MraW [Mycobacterium vanbaalenii PYR-1]
 gi|119957321|gb|ABM14326.1| S-adenosyl-methyltransferase MraW [Mycobacterium vanbaalenii PYR-1]
          Length = 378

 Score =  345 bits (886), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 115/316 (36%), Positives = 176/316 (55%), Gaps = 17/316 (5%)

Query: 19  DHVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDP 68
            H+PVLL++ + LL PA         G  ++DAT GAGG+S  F        +I LDRDP
Sbjct: 60  PHIPVLLDRCVELLAPALTRTSTDGSGATLVDATLGAGGHSERFLTQFPALRLIGLDRDP 119

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD-----KGVDGVVFDLGVSSMQIDCGDR 123
            A+    + +  + ++ +L +  +  +   V +      GVD ++FDLGVSSMQ+D  +R
Sbjct: 120 DALHIAGDRLARFGDRVTLVRTRYDGIAAAVAESNCAATGVDAILFDLGVSSMQLDRVER 179

Query: 124 GFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GF++    PLDMRM   S ++A+ V+N  + K L R+L + GEEK A RIA  IV+RR +
Sbjct: 180 GFAYSVDAPLDMRMDSGSDLTAAQVLNTYDEKALARVLRVYGEEKFAGRIAAQIVRRRAN 239

Query: 183 APFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            PF TT +L  L+ + +   ++    HPA R+FQALRI VN E+E L   + +A + L+ 
Sbjct: 240 TPFSTTGELVELLYQAIPAPARRTGGHPAKRTFQALRIEVNAELESLRLAIPAALEVLRP 299

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
            G + V+++ SLEDR+VK  FA+ +         +    H   F ++T+       E++ 
Sbjct: 300 HGRIAVMAYQSLEDRIVKTEFAAATASRTPPGLPVELPGHGPRFVALTRGAERADAEEIE 359

Query: 302 FNRRSRSAKLRAGMRT 317
            N RS S +LRA  + 
Sbjct: 360 RNPRSASVRLRALEKV 375


>gi|330718673|ref|ZP_08313273.1| 16S rRNA m(4)C1402 methyltranserfase [Leuconostoc fallax KCTC 3537]
          Length = 317

 Score =  345 bits (886), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 104/309 (33%), Positives = 160/309 (51%), Gaps = 10/309 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76
           +H  VLL + IALL+  P  + +DAT G GG++    K      + + D+D  A+   + 
Sbjct: 4   EHTTVLLHEAIALLDINPEGIYVDATLGGGGHTGEILKQLTTGKLYSFDQDDTAIHYNKA 63

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
              D     +  L    F  L   +   G   V+G+V+DLGVSS+Q D G RGFS+    
Sbjct: 64  QYADEITAGKLILVHQNFRNLTHVLHQDGITSVNGIVYDLGVSSVQFDDGQRGFSYNYDA 123

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM     ++A  +VN+    DL R+L   GE++ A  IA  I + R+    +TT +
Sbjct: 124 ELDMRMDQRQALTAKIIVNEWPFNDLLRVLSRYGEDRFAKSIARKIEQYREKQLIETTFE 183

Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I+  +   ++    HPA R+FQALR+ VN+E+  L   L  A   L   G + V++
Sbjct: 184 LVDIIKDAIPAPARRKGGHPAKRTFQALRVAVNDELGALEDSLTQAIDLLGINGKISVIT 243

Query: 250 FHSLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           F SLEDRLVK+ F  + S   +     +        ++   +K ++P+Q+++A N R+ S
Sbjct: 244 FQSLEDRLVKQMFREKVSLPELPAGLPLLPEQIEVDYRLSNRKPILPSQQEIAHNHRAES 303

Query: 309 AKLRAGMRT 317
           AKLR   R 
Sbjct: 304 AKLRGIERI 312


>gi|326334986|ref|ZP_08201186.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325692791|gb|EGD34730.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 314

 Score =  345 bits (886), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 112/307 (36%), Positives = 164/307 (53%), Gaps = 17/307 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+PVLL + I  L   P    +DATFG GG+SR+     S+   +IA D+DP A     E
Sbjct: 7   HIPVLLSQTIEGLALNPEGTYVDATFGGGGHSRAILAQLSHNGRLIAFDQDPQAQGNIIE 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                 E+F L    F  ++ ++   GV   +GV+ D GVSS Q D   RGFS +   PL
Sbjct: 67  -----DERFMLIPQNFRYIKRFLRFYGVRQVEGVLADFGVSSYQFDTAQRGFSTRFEAPL 121

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+    +SA +VVN     +L+ +L   GE + A +IA  ++ +RQ +P +TT DL 
Sbjct: 122 DMRMNQEQPLSAFEVVNTYTESELSELLYRYGELRNAKQIARTLIAQRQISPIRTTMDLR 181

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           + +Q  +   K N++      +QA+RI VN E+  L + L    + +K GG + ++S+HS
Sbjct: 182 NAVQAFLPKGKENKV--LAPLYQAIRIEVNQELAALEEFLLQLPEVVKQGGRIALISYHS 239

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDRLVK+F           +     N  P   +    K +VP+ E++A N R+RSAKLR
Sbjct: 240 LEDRLVKRFIRDGQCSGEPQKDFYG-NTFPPFVKI--GKPIVPSPEEIALNNRARSAKLR 296

Query: 313 AGMRTVE 319
              RT  
Sbjct: 297 IAERTEN 303


>gi|289671027|ref|ZP_06492102.1| S-adenosyl-methyltransferase MraW [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 352

 Score =  345 bits (886), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 121/332 (36%), Positives = 181/332 (54%), Gaps = 11/332 (3%)

Query: 12  AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDP 68
            +  +   HVPVL  +V+  L        LD TFG GG++R   +    G  ++ +D+DP
Sbjct: 10  PVSQSPAAHVPVLYTQVLDGLQVTDNGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDP 69

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
            A++  ++T      + S+ + +F+ L   V    VDG++ DLGVSS Q+D   RGFSF 
Sbjct: 70  EAIAVAEQTFGG-DARVSIHRGSFAGLGQVVAAAAVDGILLDLGVSSPQLDVAGRGFSFG 128

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           K GPLDMRM   SG SA++ +  A+ +++  +L   GEE+Q+ RIA AIV RR   P   
Sbjct: 129 KDGPLDMRMDPDSGQSAAEWLAHASDREIADVLWTYGEERQSRRIARAIVARRAEQPLLR 188

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T  L+ LI   +    +++ HPATRSFQA+RI++N E+++L  GL +A  ALK GG L V
Sbjct: 189 TAQLADLIASVMPRG-DSKTHPATRSFQAIRIYINRELDDLEAGLDAALAALKPGGRLAV 247

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +SFHSLEDR+VK+F A  +    + R +  +       Q ++   +     ++  N R+R
Sbjct: 248 ISFHSLEDRIVKQFMARYAKAPPSNRRLPEAQPFVPTLQLVS-GAIKADDAELNVNPRAR 306

Query: 308 SAKLRAGMR----TVERSIEDDSFVHLPRLPT 335
           SA LR   +      E  + D       R  T
Sbjct: 307 SAVLRVAEKLGMGNGESGMGDGRSAAASRFST 338


>gi|262370681|ref|ZP_06064006.1| S-adenosylmethionine-dependent methyltransferase [Acinetobacter
           johnsonii SH046]
 gi|262314481|gb|EEY95523.1| S-adenosylmethionine-dependent methyltransferase [Acinetobacter
           johnsonii SH046]
          Length = 307

 Score =  345 bits (885), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 107/308 (34%), Positives = 160/308 (51%), Gaps = 16/308 (5%)

Query: 20  HVPVLLEKVIALL-NPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
           H+ VLL + +  L       + +D TFG GG++R         + V   D+DP A+    
Sbjct: 3   HISVLLHETVDALVADRNTGIFIDGTFGRGGHTRLLLSKLDENARVYGFDKDPQALETA- 61

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +     +F +  A+F+ L+  +  +G   VDGV+ DLGVSS Q+D  +RGFSF K GP
Sbjct: 62  AILEQEDPRFKIIHASFADLKHELEVRGIGLVDGVMADLGVSSPQLDQAERGFSFMKDGP 121

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G +A+  +     + L  I+   GEE+ + RIA AI         +TT  L
Sbjct: 122 LDMRMDNSKGPTAAQWLVNIEEEALANIIFQYGEERYSRRIAKAIKAA---GLIETTAQL 178

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + +++      + N+ H ATR+FQA+RI +N E+E++   L  A + LK  G L V+SFH
Sbjct: 179 AEIVKVAHPKWEKNK-HAATRTFQAIRIAINKELEDIEVFLPQAVEVLKPNGRLAVISFH 237

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDRL+K+F    S     +   +P         + +++  V  +  +V  N RSRSA 
Sbjct: 238 SLEDRLIKQFIQKESTLEEDMGWGMPQQRPDTRRLKKVSR--VKASDAEVKANPRSRSAW 295

Query: 311 LRAGMRTV 318
           LR   R  
Sbjct: 296 LRVAERLA 303


>gi|158522805|ref|YP_001530675.1| S-adenosyl-methyltransferase MraW [Desulfococcus oleovorans Hxd3]
 gi|263446302|sp|A8ZXX1|RSMH_DESOH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|158511631|gb|ABW68598.1| S-adenosyl-methyltransferase MraW [Desulfococcus oleovorans Hxd3]
          Length = 312

 Score =  345 bits (885), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 112/308 (36%), Positives = 172/308 (55%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  V+ ++ +ALLN   GK++ D T G GG++    +       +I +D+DP A++  ++
Sbjct: 5   HTSVMPDQAVALLNCEKGKIVADCTLGGGGHAVRIAEQILPEGLLIGIDKDPAALAHAKQ 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  + E+    +  F+   + +       VDGV+ DLG+S  QID   RGFSF+K  PL
Sbjct: 65  ALSVFGERVLYVRGNFADFSEILSSLDIPAVDGVLLDLGLSFYQIDGSGRGFSFRKDEPL 124

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     ++A+D+VNQ+   DL RI    GEE+ ASRIA  IV+ R+SAP  T+  L+
Sbjct: 125 DMRMDPDQSLTAADLVNQSAEADLVRIFREFGEERYASRIARRIVEARRSAPVTTSGQLA 184

Query: 193 SLIQKTVYFSKNN--RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
            ++       + +  +I PATR F ALRI VN E+E L + L +    +K GG + V+SF
Sbjct: 185 RIVTDAYPAKERHTAKIDPATRVFMALRIAVNTELENLERFLDTVIDRIKPGGRICVLSF 244

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK+         +      + S +     + +T+K +VPT E+V  N  +RS 
Sbjct: 245 HSLEDRMVKRRMKLWEKACVCPPGLPVCSCSKQRECRIVTRKALVPTAEEVQANPMARSV 304

Query: 310 KLRAGMRT 317
           +LRA  + 
Sbjct: 305 RLRAAEKV 312


>gi|78065113|ref|YP_367882.1| S-adenosyl-methyltransferase MraW [Burkholderia sp. 383]
 gi|88909190|sp|Q39JX8|RSMH_BURS3 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|77965858|gb|ABB07238.1| methyltransferase [Burkholderia sp. 383]
          Length = 313

 Score =  345 bits (885), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 115/311 (36%), Positives = 176/311 (56%), Gaps = 19/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  + +D TFG GG+SR+       G  +IA D+DP A+   Q 
Sbjct: 7   HRTVLLDEAVESLVTRPDGIYVDGTFGRGGHSRAVLARLAPGGRLIAFDKDPRAIETAQ- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +FS+   +F+ ++D +  +GV    GV+ DLGVSS Q+D   RGFSF+  GPL
Sbjct: 66  --GIEDARFSIVHDSFASMRDALAARGVEKVSGVLLDLGVSSPQVDDPARGFSFRADGPL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS----APFQTT 188
           DMRM  + G SA++ + +A+V++LT ++   GEE+ A +IA A+V RR       P  TT
Sbjct: 124 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDTT 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ ++   V   +     PATR+FQA+RI VN E+ +L   L +A   L+ GG L+V+
Sbjct: 184 GELAQIVGHVVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVI 242

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           SFHSLEDR+VK+F  + +      R +     +      + I++    P++ +VA N R+
Sbjct: 243 SFHSLEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPPLKIISR--QFPSEAEVAANPRA 300

Query: 307 RSAKLRAGMRT 317
           RSA +R   R 
Sbjct: 301 RSAVMRIAERV 311


>gi|291514761|emb|CBK63971.1| S-adenosyl-methyltransferase MraW [Alistipes shahii WAL 8301]
          Length = 300

 Score =  345 bits (885), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 118/304 (38%), Positives = 165/304 (54%), Gaps = 16/304 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H PVLLE+ + LL   P     D TFG GG+SR           +   D+D   +     
Sbjct: 5   HTPVLLEESVGLLAVEPAGTYADLTFGGGGHSRRILSDLGPEGRLYGFDQDRDTLEN--- 61

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             R    +F   ++ F  L+  +  +GV   DG++ DLGVSS   D  +RGFSF+   PL
Sbjct: 62  --RPDDARFHYVESNFRFLRGALRLRGVTEVDGILADLGVSSHHFDAVERGFSFRGEAPL 119

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  G ++A+DVVN    +DLTRILG  GE +   ++A+ +VK R +AP  TT  L 
Sbjct: 120 DMRMNQRGRLTAADVVNDYTAEDLTRILGDWGEVETPWKVANCLVKARAAAPVTTTAQLV 179

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
             ++      K +     T+ FQALRI VN E+E L   L  + + LK GG L+V+S+HS
Sbjct: 180 GAVKPCTP--KKDEAKFLTKLFQALRIEVNGEMEALKMALEQSLRVLKPGGRLVVISYHS 237

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDRLVK F  S +      +     +  P  F  +T+K V P+ E++  N RSRSAKLR
Sbjct: 238 LEDRLVKNFMRSGNFSGQVEKDFFGRSQAP--FDLVTRKAVTPSAEELDRNPRSRSAKLR 295

Query: 313 AGMR 316
           A ++
Sbjct: 296 AAVK 299


>gi|289663644|ref|ZP_06485225.1| S-adenosyl-methyltransferase MraW [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 352

 Score =  345 bits (885), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 121/332 (36%), Positives = 181/332 (54%), Gaps = 11/332 (3%)

Query: 12  AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDP 68
            +  +   HVPVL  +V+  L        LD TFG GG++R   +    G  ++ +D+DP
Sbjct: 10  PVSQSPAAHVPVLYTQVLDGLQVTDNGTYLDGTFGRGGHARGVLEHLGPGGRLLVMDKDP 69

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
            A++  ++T      + S+ + +F+ L   V    VDG++ DLGVSS Q+D   RGFSF 
Sbjct: 70  EAIAVAEQTFGG-DARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLDVAGRGFSFG 128

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           K GPLDMRM   SG SA++ +  A+ +++  +L   GEE+Q+ RIA AIV RR   P   
Sbjct: 129 KDGPLDMRMDPDSGQSAAEWLAHASDREIADVLWTYGEERQSRRIARAIVARRAEQPLLR 188

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T  L+ LI   +    +++ HPATRSFQA+RI++N E+++L  GL +A  ALK GG L V
Sbjct: 189 TAQLADLIASVMPRG-DSKTHPATRSFQAIRIYINRELDDLEAGLDAALAALKPGGRLAV 247

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +SFHSLEDR+VK+F A  +    + R +  +       Q ++   +     ++  N R+R
Sbjct: 248 ISFHSLEDRIVKQFMARYAKAPPSNRRLPEAQPFVPTLQLVS-GAIKADDAELNVNPRAR 306

Query: 308 SAKLRAGMR----TVERSIEDDSFVHLPRLPT 335
           SA LR   +      E  + D       R  T
Sbjct: 307 SAVLRVAEKLGMGNGESGMGDGRSAAASRFST 338


>gi|54310311|ref|YP_131331.1| S-adenosyl-methyltransferase MraW [Photobacterium profundum SS9]
 gi|50402223|sp|P62475|RSMH_PHOPR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|46914752|emb|CAG21529.1| putative S-adenosylmethionine-dependent methyltransferaseinvolved
           in cell envelope biogenesis [Photobacterium profundum
           SS9]
          Length = 315

 Score =  344 bits (884), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 115/313 (36%), Positives = 172/313 (54%), Gaps = 19/313 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
           +H+ VLL + +  L   P  + +D TFG GG+SR           +  +DRDP A++  Q
Sbjct: 6   EHISVLLHESVDGLAIKPDGIYIDGTFGRGGHSRLILSHLGENGRLYGIDRDPQAIAEAQ 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +FS+    FS +  Y+ ++     VDGV+ DLGVSS Q+D  +RGFSF + G
Sbjct: 66  TI---DDPRFSIIHGPFSGMAQYMEERDLIGRVDGVLLDLGVSSPQLDDAERGFSFMRDG 122

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ---SAPFQT 187
           PLDMRM   SGISA++ + +A   D+  +L   GEE+ A RIA  IV+ R+     P   
Sbjct: 123 PLDMRMDPTSGISAAEWLAEAEADDIAWVLKEFGEERFAKRIARGIVEHRENPDKKPLTR 182

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T++L++LI     F ++   HPATRSFQA+RI++N+E++E+   L  A K L   G L V
Sbjct: 183 TKELAALISDVSPF-RDKHKHPATRSFQAIRIYINSELDEIETALNGAVKVLAPQGRLSV 241

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVVVPTQEDVAFN 303
           +SFHSLEDR+VK+F    S           +             +  K + P+++++  N
Sbjct: 242 ISFHSLEDRMVKRFIRKNSKGPEVPAGFPLTEDQIKALGSADLKMASKAIKPSKDELGDN 301

Query: 304 RRSRSAKLRAGMR 316
           +R+RS+ LR   R
Sbjct: 302 KRARSSVLRLAER 314


>gi|67925208|ref|ZP_00518575.1| methyltransferase [Crocosphaera watsonii WH 8501]
 gi|67852944|gb|EAM48336.1| methyltransferase [Crocosphaera watsonii WH 8501]
          Length = 292

 Score =  344 bits (884), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 109/302 (36%), Positives = 160/302 (52%), Gaps = 27/302 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCGQET 77
           H PVL + ++  L   P    LDAT G GG+SR       +V    +D D  A++  Q  
Sbjct: 8   HTPVLPQALLDGLAIDPNGHYLDATLGRGGHSRLILATFPDVRVTGIDLDDEAIATTQGN 67

Query: 78  MRD-YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
           + + + ++  ++Q  F+     + +   +G++ DLGVSS Q D  +RGFSF+   PLDMR
Sbjct: 68  LSELFGDRLQVWQGNFADYSGKIGE--FNGIIADLGVSSPQFDVAERGFSFRHQAPLDMR 125

Query: 137 MS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M+    ++A++++N  +   L  +    GEE+++  IA  IV++R   PF+TT  L+  I
Sbjct: 126 MNRQQSLTAAEIINHWDQTSLADLFYQYGEERRSRVIARRIVQQR---PFETTTALAEAI 182

Query: 196 QKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
                   +  RIHPATR FQALRI VN+E+  L + L  A   LK GG + ++SFHSLE
Sbjct: 183 ALCFPPKQRYGRIHPATRVFQALRIAVNDELGSLERFLEKAPHWLKPGGRIGIISFHSLE 242

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           DR VK  F                     +   +TKK ++P  E+ A N RSRSAKLR  
Sbjct: 243 DRRVKYSFRDS-----------------LLLDVVTKKPIIPQAEEQANNPRSRSAKLRFA 285

Query: 315 MR 316
            R
Sbjct: 286 QR 287


>gi|159038986|ref|YP_001538239.1| S-adenosyl-methyltransferase MraW [Salinispora arenicola CNS-205]
 gi|262826354|sp|A8LX88|RSMH_SALAI RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|157917821|gb|ABV99248.1| S-adenosyl-methyltransferase MraW [Salinispora arenicola CNS-205]
          Length = 372

 Score =  344 bits (884), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 121/319 (37%), Positives = 181/319 (56%), Gaps = 11/319 (3%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGK----VILDATFGAGGYSRSFCKMGSN--VI 62
           M   +    G HVPVLLE+ + LL PA G+    V +DAT G GG++ +         ++
Sbjct: 1   MGVDMGELRGAHVPVLLERCLELLAPALGRAGRTVYVDATLGLGGHAEAVLATHPQTMLV 60

Query: 63  ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQID 119
            LDRD  A++  +  +  + ++  L  A + +L D +   G   VDG++FDLGVSS+Q+D
Sbjct: 61  GLDRDTEALAHARVRLARFADRVHLEHAVYDELPDVLDRLGHPVVDGILFDLGVSSLQLD 120

Query: 120 CGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178
             DRGF++ +  PLDMRM  + G++A +VVN     DL R+L + GEEK A RIA AIV+
Sbjct: 121 APDRGFAYAQDAPLDMRMDQTRGLTAEEVVNTYPHPDLARVLRVYGEEKFAPRIASAIVR 180

Query: 179 RRQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
            R+  P  ++  L+ L+++T+   ++    HPA R+FQALRI VN E+  L   L +A  
Sbjct: 181 ERERDPITSSARLAELVRQTIPAPARRTGGHPAKRTFQALRIEVNRELAALETALPAALD 240

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297
            L   G L+V+S+HSLEDRL K   A R      V   +        F+ +++   +P +
Sbjct: 241 RLTIEGRLVVLSYHSLEDRLTKVALADRVRSKGPVDLPVELPGTGPTFRLLSRGAELPGE 300

Query: 298 EDVAFNRRSRSAKLRAGMR 316
            +VA N R+ S +LRA  R
Sbjct: 301 AEVAMNPRAASVRLRAAER 319


>gi|90413032|ref|ZP_01221030.1| putative S-adenosylmethionine-dependent methyltransferaseinvolvedin
           cell envelope biogenesis [Photobacterium profundum 3TCK]
 gi|90326047|gb|EAS42486.1| putative S-adenosylmethionine-dependent methyltransferaseinvolvedin
           cell envelope biogenesis [Photobacterium profundum 3TCK]
          Length = 315

 Score =  344 bits (884), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 116/313 (37%), Positives = 172/313 (54%), Gaps = 19/313 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
           +H+ VLL + +  L   P  + +D TFG GG+SR           +  +DRDP A++  Q
Sbjct: 6   EHISVLLHESVDGLAIKPDGIYIDGTFGRGGHSRLILSHLGENGRLYGIDRDPQAIAEAQ 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +FS+    FS +  Y+ ++     VDGV+ DLGVSS Q+D  +RGFSF + G
Sbjct: 66  SI---DDPRFSIIHGPFSGMAQYMEERDLIGRVDGVLLDLGVSSPQLDDAERGFSFMRDG 122

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ---SAPFQT 187
           PLDMRM   SGISA++ + +A   D+  +L   GEE+ A RIA  IV+ R+    AP   
Sbjct: 123 PLDMRMDPTSGISAAEWLAEAEADDIAWVLKEFGEERFAKRIARGIVEHRENPDKAPLTR 182

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T +L++LI     F ++   HPATRSFQA+RI++N+E++E+   L  A K L   G L V
Sbjct: 183 TTELAALISNVSPF-RDKHKHPATRSFQAIRIYINSELDEIETALNGAVKVLAPQGRLSV 241

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVVVPTQEDVAFN 303
           +SFHSLEDR+VK+F    S           +             +  K + P+++++  N
Sbjct: 242 ISFHSLEDRMVKRFIRKNSKGPEVPAGFPLTEDQIKALGSADLKMASKAIKPSKDELGDN 301

Query: 304 RRSRSAKLRAGMR 316
           +R+RS+ LR   R
Sbjct: 302 KRARSSVLRLAER 314


>gi|116511689|ref|YP_808905.1| SAM-dependent methyltransferase for cell envelope biogenesis
           [Lactococcus lactis subsp. cremoris SK11]
 gi|116107343|gb|ABJ72483.1| SAM-dependent methyltransferase for cell envelope biogenesis
           [Lactococcus lactis subsp. cremoris SK11]
 gi|300071267|gb|ADJ60667.1| S-adenosyl-methyltransferase MraW [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 298

 Score =  344 bits (884), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 97/295 (32%), Positives = 158/295 (53%), Gaps = 9/295 (3%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMRD--YKEQFS 86
           +L   P  + +DAT G  G+S          ++ + D+D  A +  +  + +   +++ +
Sbjct: 1   MLEVKPNGIYVDATLGGAGHSEYLLSKLTTGHLYSFDQDETAHANAKVRLSEQLAEDKVT 60

Query: 87  LFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSG-I 142
           L ++ F  L+  + +     +DG+++DLGVSS Q D   RGFS++K   LDMRM  S  +
Sbjct: 61  LIKSNFRNLKSALAELDITKIDGILYDLGVSSPQFDDSQRGFSYKKEARLDMRMDQSQTL 120

Query: 143 SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS 202
           SA +VVN    + L RI    GE+K + +IA  I + R+  P +TT +L+ LI+  +   
Sbjct: 121 SAYEVVNDYPYEALVRIFFRYGEDKFSKQIARKIEQSRKIKPIETTIELADLIKSALPQK 180

Query: 203 K-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKF 261
           +   + HPA R FQA+RI VN+E+    + +  A   LK  G + V++FHSLEDRL K  
Sbjct: 181 ELKKKGHPAKRIFQAIRIEVNDELGAAEESIEQAIDLLKVDGRISVITFHSLEDRLTKSI 240

Query: 262 FASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           F   S   +     +      A  + I +K V+ ++E++ FN R+ SAKLR   +
Sbjct: 241 FKEYSTVNVPKGLPMLPKEMEAKLKLINRKPVLASEEELEFNNRAHSAKLRVAQK 295


>gi|284045229|ref|YP_003395569.1| S-adenosyl-methyltransferase MraW [Conexibacter woesei DSM 14684]
 gi|283949450|gb|ADB52194.1| S-adenosyl-methyltransferase MraW [Conexibacter woesei DSM 14684]
          Length = 314

 Score =  344 bits (884), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 119/313 (38%), Positives = 176/313 (56%), Gaps = 8/313 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73
            G H+PVL  ++I LL+P PG+V++D T G GG++R           +I +DRDP A   
Sbjct: 2   TGIHIPVLAGELIELLDPQPGQVVVDCTLGGGGHARLVAGRIGPTGTLIGIDRDPIAEER 61

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGV--DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
             E   +        +A F+Q  + +  +GV  D V  DLG+SSMQ+D  +RGFS+    
Sbjct: 62  FAELTAEVSCTTRFIRADFAQGLEQLAREGVQADLVYMDLGMSSMQVDTWERGFSYAYDA 121

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM     ++A +VVN  + + L R+L   GEE+ AS+IA AI + R+  P +TTQ 
Sbjct: 122 PLDMRMDSEQELTAHEVVNGWDERRLARLLKEYGEERYASKIARAIARTREQQPIETTQA 181

Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I+  +   ++    HPA R+FQA+RI VN E+E++  GL  A   L  GG L  +S
Sbjct: 182 LVDVIKSAIPIPAQFGGGHPAKRTFQAIRIAVNEELEQIDDGLPFAWDVLAPGGRLAAIS 241

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR VK+F   R+   +      I +       + +T++ + PT  +VA N R++S
Sbjct: 242 FHSLEDRRVKRFLVDRARGCICPPDLPICACGRTPEGELLTRRAIAPTAGEVAHNPRAKS 301

Query: 309 AKLRAGMRTVERS 321
           A LR  ++  E S
Sbjct: 302 AHLRGALKLKEMS 314


>gi|152980341|ref|YP_001354713.1| S-adenosyl-methyltransferase MraW [Janthinobacterium sp. Marseille]
 gi|263456176|sp|A6T2G6|RSMH_JANMA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|151280418|gb|ABR88828.1| S-adenosyl-methyltransferase [Janthinobacterium sp. Marseille]
          Length = 322

 Score =  344 bits (884), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 108/315 (34%), Positives = 175/315 (55%), Gaps = 18/315 (5%)

Query: 20  HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73
           H  VLL++ +  L         V +D TFG GG+SR   +    G+ ++A D+D  A++ 
Sbjct: 11  HRTVLLDEAVDALALGGERANGVYVDGTFGRGGHSRKILQQLGSGARLLAFDKDTQAIAN 70

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
                    ++F +   +F+ L + +  +G   VDGV+ DLG+SS Q+D   RGFSF+  
Sbjct: 71  AATI---DDQRFEIAHDSFATLSEALAVRGIKQVDGVLLDLGISSPQVDDATRGFSFRAD 127

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
           GPLDMRM  + G+SA++ +     + + +++   GEE+ A +IA AIV RR   P  +T+
Sbjct: 128 GPLDMRMDTTRGMSAAEWLATETEQKIEKVIREYGEERFAFQIAKAIVARRAVEPISSTR 187

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            L+ ++ +TV   +     PATR+FQA+RIF+N E+EEL   L  A + L   G L+V+S
Sbjct: 188 QLAEIVARTVKT-REKGKDPATRTFQAIRIFINQELEELEVVLNEAYRYLAPHGRLVVIS 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           FHSLEDR+VK+F A ++      R +     +      + +++  V P+  +++ N R+R
Sbjct: 247 FHSLEDRIVKQFMAGKANVPQPDRRLPIRAIDLPQPEMKLLSR--VKPSAAEISENPRAR 304

Query: 308 SAKLRAGMRTVERSI 322
           SA +R   R    + 
Sbjct: 305 SAVMRVAERLSPAAR 319


>gi|254797245|ref|YP_003082087.1| S-adenosyl-methyltransferase MraW [Neorickettsia risticii str.
           Illinois]
 gi|254590494|gb|ACT69856.1| S-adenosyl-methyltransferase MraW [Neorickettsia risticii str.
           Illinois]
          Length = 296

 Score =  344 bits (884), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 122/300 (40%), Positives = 171/300 (57%), Gaps = 18/300 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETM 78
           H PVLL + +  L P  G V +DATFGAGGY+R+        V A+DRD       Q   
Sbjct: 13  HKPVLLSEALKFLAPKNGAVYVDATFGAGGYTRAILSSVDCFVYAIDRDETVKRFFQLIE 72

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138
            D+ ++ +   A F  ++  + +  VDG+VFDLGVS+MQ+   DRGFSF   GPLDMRM 
Sbjct: 73  SDFPKRTTFINANFVDIEALLGEVKVDGIVFDLGVSTMQLKVADRGFSFLHEGPLDMRMD 132

Query: 139 CSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK 197
            +  ++A  +VN      +  I+   GEE+ + +IAHAIV  R+     TT  L+ +++ 
Sbjct: 133 RNTILTAETIVNSYTEVKIASIIYQFGEERMSRKIAHAIVDARRKKRITTTSSLAEIVRS 192

Query: 198 TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRL 257
                +  +I PAT++FQALRIFVN+E+  L  GLR+A   LK GG  +VVSFHSLEDR+
Sbjct: 193 CFP-KRYYKIDPATKTFQALRIFVNDELGALECGLRTALTMLKVGGRAVVVSFHSLEDRI 251

Query: 258 VKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           VK  F S  G                 F  +TKK+VVP++++V  N  SRSA++R   + 
Sbjct: 252 VKHLFRSVHGNG---------------FNLLTKKIVVPSRDEVRENPSSRSARMRVIEKV 296


>gi|195997843|ref|XP_002108790.1| hypothetical protein TRIADDRAFT_19892 [Trichoplax adhaerens]
 gi|190589566|gb|EDV29588.1| hypothetical protein TRIADDRAFT_19892 [Trichoplax adhaerens]
          Length = 378

 Score =  344 bits (883), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 132/344 (38%), Positives = 197/344 (57%), Gaps = 42/344 (12%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAV 71
           H ++  H PVLL+ V+ LL PA G+  +DATFG GG++ +  K  ++  + A+D DP A+
Sbjct: 25  HCSVLKHQPVLLDTVVKLLAPANGQSYIDATFGGGGHTSAILKAATDCQIYAIDTDPLAI 84

Query: 72  SCGQETMR---DYKEQFSLFQATFSQL------QDYVPDKGVDGVVFDLGVSSMQIDCGD 122
           +  ++      ++ ++  + Q  F Q+      Q+ +P   +DG++FDLG+SSMQID   
Sbjct: 85  ARAKQLASTTSNWIQRLKVVQCRFGQMENKLLAQEKLPPNSMDGIIFDLGMSSMQIDDPL 144

Query: 123 RGFSFQKSGPLDMRMSCSG---------ISASDVVNQANVKDLTRILGILGEEKQASRIA 173
           RGFSFQ SGPLDMRM  +          I+A+ V+N  + +DL  +L   GEE++A  IA
Sbjct: 145 RGFSFQSSGPLDMRMDATSDEIGKHQHRITAAHVINNIDKEDLADVLWNYGEERKARAIA 204

Query: 174 HAIVKRRQSAPFQTTQDLSSLIQKTVYF--SKNNRIHPATRSFQALRIFVNNEIEELAQG 231
            AI+K R+  P  TT  L  +I +   +   K+ +IHPATR+FQA+RI +N+E+ +L QG
Sbjct: 205 TAIIKARKKQPITTTDHLVDIIDRQFPYKYRKDGQIHPATRTFQAIRILINDELWQLVQG 264

Query: 232 LRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH---------- 281
           L + +  LK GG LIV+SFHSLEDR+VKKFF          R    S+            
Sbjct: 265 LNACKALLKNGGRLIVISFHSLEDRIVKKFFNGEDRPDFTSRSSPTSSKQYARLSEEGKS 324

Query: 282 ----------PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
                      + ++ I KK + P+ E++A N R+RSAKLR  +
Sbjct: 325 KIESKSIIKRNSPWKLICKKPIYPSPEEIAHNSRARSAKLRCAI 368


>gi|282897735|ref|ZP_06305734.1| methyltransferase [Raphidiopsis brookii D9]
 gi|281197414|gb|EFA72311.1| methyltransferase [Raphidiopsis brookii D9]
          Length = 305

 Score =  344 bits (883), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 111/312 (35%), Positives = 164/312 (52%), Gaps = 26/312 (8%)

Query: 11  SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDP 68
           + ++     H+PVL E++I  LN   G   LD T G GG+SR   +   N  V+A+D+D 
Sbjct: 15  TPLNQVPFSHIPVLGEELIRGLNIQAGGNYLDLTVGGGGHSRLILQAADNTKVMAVDQDL 74

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
            AV   +  + ++ ++       F       P    DG++ DLGVSS  +D  +RGFSF+
Sbjct: 75  DAVIAAKTRLSEFGDRVDFLHTNFVNFP--FPPNTYDGILADLGVSSYHLDNPERGFSFR 132

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
            +  LDMRM+    I+A+D+VN  + ++LT I    GEE+ + +IA  I++ R   PF T
Sbjct: 133 HTANLDMRMNQQQSITAADIVNGWDEQELTHIFFEYGEERLSRKIARRIIENR---PFST 189

Query: 188 TQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T  L+  I   V    +  RIHPATR FQALR+ VN+E++ L   L  A  +L  GG + 
Sbjct: 190 TTQLAESISSCVPPKYRYGRIHPATRVFQALRLAVNDELQVLETLLHKAPPSLVPGGKIA 249

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           ++SFHSLEDR+VK    +                   +   +TKK +  T  ++  N RS
Sbjct: 250 LISFHSLEDRIVKHGLRNSD-----------------LLTVMTKKPITATDPEIQHNPRS 292

Query: 307 RSAKLRAGMRTV 318
           RSAKLR   +  
Sbjct: 293 RSAKLRIAQKVA 304


>gi|209519087|ref|ZP_03267893.1| S-adenosyl-methyltransferase MraW [Burkholderia sp. H160]
 gi|209500459|gb|EEA00509.1| S-adenosyl-methyltransferase MraW [Burkholderia sp. H160]
          Length = 317

 Score =  344 bits (883), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 115/323 (35%), Positives = 178/323 (55%), Gaps = 20/323 (6%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           M+ A+ + +  H  VLL + +  L        +D TFG GG+SR   +       +IA D
Sbjct: 1   MAPAMGNELQ-HRTVLLNEAVDALVTRTDGTYVDGTFGRGGHSRLVLERLGEAGRLIAFD 59

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGD 122
           +DP A++  Q+       +F++   +F+ L+  + ++GV    GV+ DLGVSS Q+D  +
Sbjct: 60  KDPLAIATAQKIA---DSRFAIVHESFASLRAAMAERGVGRVSGVLLDLGVSSPQVDDPE 116

Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF+  GPLDMRM  + G SA+D + +A V++LT ++   GEE+ A +IA A+V RR 
Sbjct: 117 RGFSFRADGPLDMRMDPTRGESAADWLARATVQELTEVIRDYGEERFAFQIAKALVARRA 176

Query: 182 S----APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
                 P  +T +L+ ++   V   +     PATR+FQA+RI VN E+ EL   L +A  
Sbjct: 177 ESDRLGPLVSTGELAQIVANVVKT-REKGKDPATRTFQAIRIHVNQELAELQVVLEAALS 235

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVP 295
            L+ GG L+V+SFHSLEDR+VK+F  + +      R +     +      + I +  V  
Sbjct: 236 LLEQGGRLVVISFHSLEDRIVKRFMQAHASTPAVDRRLPIRAVDLPSPPLKIIGR--VFA 293

Query: 296 TQEDVAFNRRSRSAKLRAGMRTV 318
           +  +VA N R+RSA +R   R  
Sbjct: 294 SDAEVADNPRARSAVMRVAERIA 316


>gi|88608489|ref|YP_506785.1| S-adenosyl-methyltransferase MraW [Neorickettsia sennetsu str.
           Miyayama]
 gi|123491328|sp|Q2GCL1|RSMH_NEOSM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|88600658|gb|ABD46126.1| S-adenosyl-methyltransferase MraW [Neorickettsia sennetsu str.
           Miyayama]
          Length = 296

 Score =  344 bits (883), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 121/300 (40%), Positives = 168/300 (56%), Gaps = 18/300 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETM 78
           H PVLL + +  L P  G V +DATFGAGGY+R+        V A+DRD       Q   
Sbjct: 13  HKPVLLSEALKFLAPKNGGVYVDATFGAGGYTRAILSSVDCFVYAIDRDETVRRFFQVIE 72

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138
            D+ ++ +     F  +   + +  VDG+VFDLGVS+MQ+   DRGFSF   GPLDMRM 
Sbjct: 73  NDFPKRTNFINGNFVDIGSLLGEVKVDGIVFDLGVSTMQLKVADRGFSFLHEGPLDMRMD 132

Query: 139 CSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK 197
            S + +A  VVN      +  I+   GEE+ + +IAHAIV  R+     TT  L+ +++ 
Sbjct: 133 RSTLLTAETVVNSYTEVKIASIIYQFGEERMSRKIAHAIVNARRKKRITTTSSLAEIVRS 192

Query: 198 TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRL 257
                +  +I PAT++FQALRIF+N+E+  L  GLR+A   LK G   +VVSFHSLEDR+
Sbjct: 193 CFP-KRYYKIDPATKTFQALRIFINDELGALECGLRTALTMLKVGSRAVVVSFHSLEDRI 251

Query: 258 VKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           VK  F S  G                 F  +TKK+VVP++++V  N  SRSA++R   + 
Sbjct: 252 VKHLFRSVHGNG---------------FNLLTKKIVVPSRDEVRENPSSRSARMRVIEKV 296


>gi|113478175|ref|YP_724236.1| S-adenosyl-methyltransferase MraW [Trichodesmium erythraeum IMS101]
 gi|123351672|sp|Q10VG1|RSMH_TRIEI RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|110169223|gb|ABG53763.1| S-adenosyl-methyltransferase MraW [Trichodesmium erythraeum IMS101]
          Length = 283

 Score =  344 bits (883), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 108/302 (35%), Positives = 163/302 (53%), Gaps = 26/302 (8%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQE 76
           +H+PVL  ++I+ L   P  + LDAT G GG+++          V+A+D+D  A+   Q 
Sbjct: 2   NHIPVLSSELISGLVIRPRGLYLDATLGFGGHTKLILAAAPEVKVVAIDQDKQALDSSQT 61

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
            +  Y        + F+       +   DG++ DLG++S+Q+D  +RGFSF+  G LDMR
Sbjct: 62  LLASYNSNIQFCHSNFADYDP--QNLKFDGILADLGINSVQLDTPERGFSFRHQGKLDMR 119

Query: 137 MSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M+    I+A+ ++N      L  I    GEE+ + RIA  I++ R   P +TT +L+ ++
Sbjct: 120 MNQQQTITAAKIINHWEEVKLANIFYTYGEERLSRRIARKIIESR---PLETTTELAEVV 176

Query: 196 QKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
              V +  +  RIHPATR FQALRI VN E+  L   L++A   LK GG + ++SFHSLE
Sbjct: 177 ANCVPYKYRYGRIHPATRVFQALRIEVNQELSRLETFLKNAPHWLKIGGRIGIISFHSLE 236

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           DRLVK    + S                 + + +TKK + P   +VA N R+RSAKLR  
Sbjct: 237 DRLVKHSLRNAS-----------------ILKVLTKKPIQPQDNEVAINPRARSAKLRLA 279

Query: 315 MR 316
            +
Sbjct: 280 EK 281


>gi|320011279|gb|ADW06129.1| S-adenosyl-methyltransferase MraW [Streptomyces flavogriseus ATCC
           33331]
          Length = 321

 Score =  344 bits (883), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 121/316 (38%), Positives = 182/316 (57%), Gaps = 13/316 (4%)

Query: 20  HVPVLLEKVIALLNPAPGK------VILDATFGAGGYSRSFCKMGS--NVIALDRDPFAV 71
           HVPV+L++ + LL PA         V++D T G GG+S +         ++ALDRD  A+
Sbjct: 6   HVPVMLQRCLDLLAPALEATGPQPPVVVDCTLGLGGHSEALLAAFPAARLVALDRDKEAL 65

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQ 128
               E +  Y ++ +L  A + +L + +   G   V GV+FDLGVSSMQ+D  DRGF++ 
Sbjct: 66  RLSGERLAPYGDRATLVHAVYDELPEVLDRLGIPKVQGVLFDLGVSSMQLDEADRGFAYA 125

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           +  PLDMRM  + GI A++V+N     +L RIL   GEEKQA RI  A+V+ R+  PF  
Sbjct: 126 QDAPLDMRMDQTTGIGAAEVLNTYPPGELVRILRAYGEEKQAKRIVSAVVREREKEPFSN 185

Query: 188 TQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           +  L  LI+ ++   +K    +PA R+FQALRI VN E+  L + + +A ++L  GG + 
Sbjct: 186 SARLVELIRDSLPQAAKRTGGNPAKRTFQALRIEVNGELTVLERAVPAAVRSLAVGGRIA 245

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+S+HSLEDRLVK+ FA+ +         +    +    + +T+   +PT+E+VA NRR+
Sbjct: 246 VLSYHSLEDRLVKQVFAAGAANTAPPGLPVVPERYQPRLKLLTRGAELPTEEEVAENRRA 305

Query: 307 RSAKLRAGMRTVERSI 322
             A+LR   R  E   
Sbjct: 306 APARLRGAQRIREEER 321


>gi|21672883|ref|NP_660948.1| hypothetical protein CT0042 [Chlorobium tepidum TLS]
 gi|25090698|sp|Q8KGC6|RSMH_CHLTE RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|21645935|gb|AAM71290.1| conserved hypothetical protein [Chlorobium tepidum TLS]
          Length = 318

 Score =  344 bits (883), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 108/313 (34%), Positives = 168/313 (53%), Gaps = 18/313 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV------IALDRDPFAVSC 73
           H PVL  + ++LL   P  + +D T G GG+S    +    +      + +D+D  A+  
Sbjct: 7   HEPVLARESVSLLVTLP-GIYIDGTLGGGGHSLQLLRHLQTLNGDSLLVGIDQDTHALEA 65

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDK--------GVDGVVFDLGVSSMQIDCGDRGF 125
             + + ++ ++  L +  F  +++ V            V G + DLGVSS QID  +RGF
Sbjct: 66  AGKKLGEFGDRRRLVRGNFGMVKELVEPMMRGAGNGLPVMGFLLDLGVSSFQIDTPERGF 125

Query: 126 SFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           S+ K GPLDMRM   G ++A+D+VN      L ++    GEE    RIA AIV  R SAP
Sbjct: 126 SYLKDGPLDMRMDPDGPLTAADIVNGYEEAALAKLFFRYGEEPLGGRIARAIVSARSSAP 185

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
             TT +L+ +I+      K+  I   +R +QALRI VN+E+  L Q L    + L +GG 
Sbjct: 186 LTTTGELAEVIRAACP-RKDLAIKTLSRIYQALRIEVNDELGVLEQALEDGFELLSSGGR 244

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVAFN 303
             V+S+HSLEDR+VK+FFA+++      + + +     PA    + +K +  T E+++ N
Sbjct: 245 FAVISYHSLEDRIVKRFFAAKTSADWGPKGLALREPLKPAEAVLVVRKPLEATAEEISRN 304

Query: 304 RRSRSAKLRAGMR 316
            RSRSA+LR   +
Sbjct: 305 PRSRSARLRVIQK 317


>gi|91785301|ref|YP_560507.1| S-adenosyl-methyltransferase MraW [Burkholderia xenovorans LB400]
 gi|122970134|sp|Q13TY4|RSMH_BURXL RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|91689255|gb|ABE32455.1| S-adenosyl-methyltransferase, cell division cytoplasmic protein,
           MraW [Burkholderia xenovorans LB400]
          Length = 317

 Score =  344 bits (882), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 116/323 (35%), Positives = 179/323 (55%), Gaps = 20/323 (6%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           M+ A+ + +  H  VLLE+ +  L      V +D TFG GG+SR   +       +IA D
Sbjct: 1   MAPAMGNELQ-HRTVLLEEAVQALVTRADGVYVDGTFGRGGHSRLVLEKLGESGRLIAFD 59

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGD 122
           +DP A++  Q+       +F +   +F+ L+  + ++GV    GV+ DLGVSS Q+D  +
Sbjct: 60  KDPLAIATAQQI---TDPRFGIVHESFASLRTAMAERGVGRVSGVLLDLGVSSPQVDDPE 116

Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF+  GPLDMRM  + G SA+D + +A V++LT ++   GEE+ A +IA A+V RR 
Sbjct: 117 RGFSFRADGPLDMRMDPTRGESAADWLARATVQELTEVIRDYGEERFAFQIAKALVARRA 176

Query: 182 S----APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
                 P  +T +L+ ++   V   +     PATR+FQA+RI +N E+ EL   L +A  
Sbjct: 177 ESDRLGPLVSTGELAQIVANVVKT-REKGKDPATRTFQAIRIHINQELAELQVVLEAALS 235

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVP 295
            L+ GG L+V+SFHSLEDR+VK+F  + +      R +     +      + I +  V  
Sbjct: 236 LLEQGGRLVVISFHSLEDRIVKRFMQAHASTPAVDRRLPIRAVDLPSPPLKIIGR--VFA 293

Query: 296 TQEDVAFNRRSRSAKLRAGMRTV 318
           +  +VA N R+RSA +R   R  
Sbjct: 294 SDAEVAANPRARSAVMRVAERIA 316


>gi|74316129|ref|YP_313869.1| methyltransferase [Thiobacillus denitrificans ATCC 25259]
 gi|88909225|sp|Q3SMI1|RSMH_THIDA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|74055624|gb|AAZ96064.1| methyltransferase [Thiobacillus denitrificans ATCC 25259]
          Length = 311

 Score =  344 bits (882), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 125/308 (40%), Positives = 176/308 (57%), Gaps = 12/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           HVPVL ++ +A L   P  V +DATFG GG+SR           ++ALDRDP A++ G  
Sbjct: 5   HVPVLAQEAVAALAIKPEGVYVDATFGRGGHSRMILARLGTLGRLVALDRDPAAIAAGAA 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  + +L Q+ FS+L   +   G   VDG++ D+GVSS Q+D   RGFSF+   PL
Sbjct: 65  L---DDPRLTLRQSEFSRLGKVLDALGIARVDGILLDIGVSSPQLDDAARGFSFRFDAPL 121

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM   SGISA+D +  A  ++++ ++   GEE+ A  IA A+V  RQ     +T  L+
Sbjct: 122 DMRMDPGSGISAADWLATAEEEEISEVIRTYGEERFAKPIARALVAARQKEAITSTAQLA 181

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I   V   +  + HPATRSFQA+RI++N E+EEL   L    + L+AGG L V+SFHS
Sbjct: 182 GIIAAAVKKREPGQ-HPATRSFQAIRIYLNRELEELKAVLPQCVERLRAGGRLAVISFHS 240

Query: 253 LEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK+F  + S G+    R  IP+    A    +  +    +  +VA N R+RSA L
Sbjct: 241 LEDRIVKRFLRTESLGEQAPPRLPIPAAMLKAGRLRLVGRAQHASDAEVAANPRARSAVL 300

Query: 312 RAGMRTVE 319
           R   R  E
Sbjct: 301 RVAERVAE 308


>gi|262831574|sp|A1TAX6|RSMH_MYCVP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 324

 Score =  344 bits (882), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 115/316 (36%), Positives = 176/316 (55%), Gaps = 17/316 (5%)

Query: 19  DHVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDP 68
            H+PVLL++ + LL PA         G  ++DAT GAGG+S  F        +I LDRDP
Sbjct: 6   PHIPVLLDRCVELLAPALTRTSTDGSGATLVDATLGAGGHSERFLTQFPALRLIGLDRDP 65

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD-----KGVDGVVFDLGVSSMQIDCGDR 123
            A+    + +  + ++ +L +  +  +   V +      GVD ++FDLGVSSMQ+D  +R
Sbjct: 66  DALHIAGDRLARFGDRVTLVRTRYDGIAAAVAESNCAATGVDAILFDLGVSSMQLDRVER 125

Query: 124 GFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GF++    PLDMRM   S ++A+ V+N  + K L R+L + GEEK A RIA  IV+RR +
Sbjct: 126 GFAYSVDAPLDMRMDSGSDLTAAQVLNTYDEKALARVLRVYGEEKFAGRIAAQIVRRRAN 185

Query: 183 APFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            PF TT +L  L+ + +   ++    HPA R+FQALRI VN E+E L   + +A + L+ 
Sbjct: 186 TPFSTTGELVELLYQAIPAPARRTGGHPAKRTFQALRIEVNAELESLRLAIPAALEVLRP 245

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
            G + V+++ SLEDR+VK  FA+ +         +    H   F ++T+       E++ 
Sbjct: 246 HGRIAVMAYQSLEDRIVKTEFAAATASRTPPGLPVELPGHGPRFVALTRGAERADAEEIE 305

Query: 302 FNRRSRSAKLRAGMRT 317
            N RS S +LRA  + 
Sbjct: 306 RNPRSASVRLRALEKV 321


>gi|86608801|ref|YP_477563.1| S-adenosyl-methyltransferase MraW [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|123502541|sp|Q2JLV1|RSMH_SYNJB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|86557343|gb|ABD02300.1| S-adenosyl-methyltransferase MraW [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 319

 Score =  344 bits (882), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 126/317 (39%), Positives = 165/317 (52%), Gaps = 39/317 (12%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQ 75
           +  H  VL E+V+A L P  G + LD T G GG+S +  + G+  V+ LDRDP A+   Q
Sbjct: 21  VYQHDSVLTEEVMAYLQPQGGGIFLDVTLGGGGHSLALLRGGAARVVGLDRDPAALQAAQ 80

Query: 76  ETMRD---YKEQFSLFQATFSQLQDYVPDKGV----------DGVVFDLGVSSMQIDCGD 122
                      +  L+   F+     +   G           DG+V DLGVSS Q+DC +
Sbjct: 81  ARFAAEGIPGSRIQLWHLNFADFD--LQQHGFRDEQGQGIPFDGIVADLGVSSPQLDCPE 138

Query: 123 RGFSFQKSGPLDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           RGFSF+  GPLDMRM  S    +A+D VN   V++L  I    GEE+ A RIAH I + R
Sbjct: 139 RGFSFRGEGPLDMRMDPSAAQETAADWVNHRPVEELIEIFTRYGEERFARRIAHHIEQAR 198

Query: 181 QSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
              P  TT  L+ ++ + V  + +  RIHPATR FQALRI VN E+E L   L  A   L
Sbjct: 199 ---PLATTTQLAQVVWQAVPPAARRGRIHPATRVFQALRIAVNRELEALETLLAQAPTWL 255

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
           K GG L V+SFHSLEDRLVK  F                      +Q +T K + P++ +
Sbjct: 256 KPGGRLAVISFHSLEDRLVKWAFRRD-----------------PRWQVLTPKPLSPSELE 298

Query: 300 VAFNRRSRSAKLRAGMR 316
              N R+RSAKLR   R
Sbjct: 299 RQRNPRARSAKLRVAAR 315


>gi|239618274|ref|YP_002941596.1| S-adenosyl-methyltransferase MraW [Kosmotoga olearia TBF 19.5.1]
 gi|263456220|sp|C5CGS3|RSMH_KOSOT RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|239507105|gb|ACR80592.1| S-adenosyl-methyltransferase MraW [Kosmotoga olearia TBF 19.5.1]
          Length = 298

 Score =  344 bits (882), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 116/308 (37%), Positives = 171/308 (55%), Gaps = 28/308 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H  V++++ +  L P    V +D T G GG++++  +  S    VI LD D   ++  ++
Sbjct: 9   HRSVMVQETLHYLRPTYNGVYVDGTLGEGGHTKAIIEATSGKCKVIGLDIDEEVLAIAEQ 68

Query: 77  TMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++++KE   LF  ++       + +    VDG + D+GVS+ Q+    RGFS++   PL
Sbjct: 69  NLKEFKENVELFNVSYVDFDLVLESLAVDKVDGFLLDIGVSTYQLKAKGRGFSYEIDEPL 128

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEK-QASRIAHAIVKRRQSAPFQTTQDL 191
           DMRMS SG ++A+DVVN    K+L RI+   GEEK  A RIA  IV+RR   P QTT  L
Sbjct: 129 DMRMSLSGSVTAADVVNSYPEKELARIIFEYGEEKRYARRIARKIVERR---PIQTTIQL 185

Query: 192 SSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
              I+  +   +    + H ATR+FQA+RI VN E++ L   L      LK GG ++++S
Sbjct: 186 VEAIKAALPPQERFRRKRHYATRTFQAIRIEVNGELKGLRTALEKFPNYLKPGGRIVIIS 245

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDR VK FF  + G                  + +T+K VVP+ E+V+ N R+RSA
Sbjct: 246 FHSLEDRTVKHFFREQDG---------------VTLKILTRKPVVPSVEEVSENPRARSA 290

Query: 310 KLRAGMRT 317
           KLRA  R 
Sbjct: 291 KLRAAERI 298


>gi|291384760|ref|XP_002709072.1| PREDICTED: hypothetical protein [Oryctolagus cuniculus]
          Length = 407

 Score =  344 bits (882), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 135/353 (38%), Positives = 193/353 (54%), Gaps = 45/353 (12%)

Query: 2   ESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN- 60
           + +  + M+         H+PV++++V+  L P  G+V LD TFG+GG+SR+  +  S+ 
Sbjct: 61  QDRDSEAMTEL-------HIPVMVDEVVRCLAPQKGQVFLDMTFGSGGHSRAILQKESDI 113

Query: 61  -VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVS 114
            + ALDRDP A +  ++    Y +Q       FSQ +  +   GV     DGV+ DLG S
Sbjct: 114 TLYALDRDPTAYAIAEQLSDLYPKQIRAMLGQFSQAEALLTKAGVQPGTFDGVLLDLGCS 173

Query: 115 SMQIDCGDRGFSFQKSGPLDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQAS 170
           SMQ+D  +RGFS +K GPLDMRM         +A+DVVN  + + L  IL   GEEK A 
Sbjct: 174 SMQLDAPERGFSIRKDGPLDMRMDGGRYPDMPTAADVVNALDQQALASILRTYGEEKHAK 233

Query: 171 RIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSK--------NNRIHPATRSFQALRIFVN 222
           +IA AIV+ R   P   TQ L+S++      S             H AT++FQALRIFVN
Sbjct: 234 KIASAIVQARSIYPITRTQQLASIVAGAFPPSAIYARKDLLQRSTHIATKTFQALRIFVN 293

Query: 223 NEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF-------------------A 263
           NE+ EL  GL++A+K L+ GG L+ +SFHSLEDR+VK+F                    A
Sbjct: 294 NELNELYTGLKTAQKFLRPGGRLVALSFHSLEDRIVKRFLLGISMTERFNLSVRQKVVQA 353

Query: 264 SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           S+       +  + +   P +++ I KKV+ P  +DV  N R RSAKLRA ++
Sbjct: 354 SQLSSGPENKEEVSAGRAPLMWELINKKVLTPEDQDVQENPRGRSAKLRAAIK 406


>gi|332829620|gb|EGK02266.1| ribosomal RNA small subunit methyltransferase H [Dysgonomonas gadei
           ATCC BAA-286]
          Length = 300

 Score =  344 bits (882), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 110/306 (35%), Positives = 166/306 (54%), Gaps = 16/306 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H+P LL + +  +N   G + +D TFG GG+S+          ++ A D+D  A++  QE
Sbjct: 3   HIPALLHESVDGMNIRTGSICVDVTFGGGGHSKEILSHLGNKGHLYAFDQDEDAINNIQE 62

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQK-SGP 132
                  +F+  ++ F  L++++   GV   D ++ DLGVSS   D  DRGFSF+     
Sbjct: 63  -----DSKFTFIRSNFRFLKNFIKYHGVEEVDAILADLGVSSHHFDAEDRGFSFRFEDSD 117

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+  +G +A+ ++N    + L  I  + GE K + RIA AIVK R+  P++   DL
Sbjct: 118 LDMRMNQKAGKTAAQILNTYTEEQLADIFYLYGELKPSRRIASAIVKTRKEKPYRKVSDL 177

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
              +   V            ++FQALRI VN E+E L + L  A   LK GG L+V+++H
Sbjct: 178 LDTLNSFVGRG-EKEKKVLAQAFQALRIEVNEEMETLKEMLEQALDILKPGGRLVVITYH 236

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDRLVK FF + + +    +    +   P  F+ I  KV+VP++E+   N RSRSAKL
Sbjct: 237 SLEDRLVKNFFKTGNFEGKVEKDFFGNFETP--FKLINNKVIVPSREEEERNPRSRSAKL 294

Query: 312 RAGMRT 317
           R   + 
Sbjct: 295 RIAEKI 300


>gi|218248877|ref|YP_002374248.1| S-adenosyl-methyltransferase MraW [Cyanothece sp. PCC 8801]
 gi|263447389|sp|B7K639|RSMH_CYAP8 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|218169355|gb|ACK68092.1| S-adenosyl-methyltransferase MraW [Cyanothece sp. PCC 8801]
          Length = 304

 Score =  344 bits (882), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 115/302 (38%), Positives = 166/302 (54%), Gaps = 27/302 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCGQET 77
           H+ VL ++ IA LN  PG   LDAT G+GG+SR       +V   A+DRD  A++     
Sbjct: 22  HISVLSQETIAGLNIIPGGHYLDATVGSGGHSRLILATFPDVRITAIDRDSQAIAAAASN 81

Query: 78  MRDYK-EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
           + +   E+   +Q  F+     + +    G++ DLGVSS Q D  +RGFSF+  G LDMR
Sbjct: 82  LAELGSERLKFWQGNFADYPGKIAE--FSGIIADLGVSSPQFDFPERGFSFRHEGALDMR 139

Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M  +  ++A +++NQ +   L  +    GEE+++  +A  IV++R   PF+TT  L+  I
Sbjct: 140 MDQTQSLTAGEIINQWSETALADLFYQYGEERRSRSMAKHIVQQR---PFKTTTQLAEAI 196

Query: 196 QKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
            +TV    +  RIHPATR FQALRI VN E+  L + L  A + L+ GG + ++SFHSLE
Sbjct: 197 AQTVPPKYRYGRIHPATRVFQALRIAVNEELSSLERFLDQAPQWLQPGGRIGIISFHSLE 256

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           DR+VK  F   S                     +TKK ++P +E+   N RSRSAKLR  
Sbjct: 257 DRIVKYRFRDSSW-----------------LTVMTKKPIIPQREEQLKNPRSRSAKLRLA 299

Query: 315 MR 316
            R
Sbjct: 300 ER 301


>gi|291229752|ref|XP_002734836.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii]
          Length = 377

 Score =  343 bits (881), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 126/336 (37%), Positives = 182/336 (54%), Gaps = 30/336 (8%)

Query: 12  AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPF 69
            +H     H+PV+L+ V+   +P   +V +D TFGAGG+S    K   N+   ALDRDP 
Sbjct: 41  TVHSNEQLHIPVMLDDVLDFFSPEKNQVYIDMTFGAGGHSSEILKCAENITMYALDRDPL 100

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQIDCGDRG 124
           A+   ++    +  +    +  FS++   +         VDGV+ D G SSMQ+D  +RG
Sbjct: 101 ALDIAKQLSGLHGNRIIPLEGKFSEITRLLDQHDVGLNSVDGVLLDAGCSSMQMDTAERG 160

Query: 125 FSFQKSGPLDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           FS  K GPLDMRM         +A+DVVN  +  DL +I+   GEEK A +IA +IV+ R
Sbjct: 161 FSISKDGPLDMRMDSDRDPKQPTAADVVNALSEADLAKIIRTYGEEKHARKIARSIVEYR 220

Query: 181 QS-APFQTTQDLSSLIQKTVYFSKNNR--------IHPATRSFQALRIFVNNEIEELAQG 231
            +  P  TT++ + ++       +  +        +H AT++FQALRIFVNNE+ EL  G
Sbjct: 221 TTWQPITTTKEFAYVVSCAFSHREAKKQKDKLRRPVHTATKTFQALRIFVNNELNELVMG 280

Query: 232 LRSAEKALKAGGLLIVVSFHSLEDRLVKKFFA----------SRSGKVMAVRHMIPSNAH 281
           L   EK LK GG L V++FHSLEDR+VK+F            S   K+   R     +  
Sbjct: 281 LEQVEKILKPGGKLAVITFHSLEDRIVKRFLRGIDYSEKYSMSIGEKMRENRTRDGDDNR 340

Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           P  ++ I KKV+ P +ED+  N R+RSAKLR  ++ 
Sbjct: 341 PQRWKEINKKVLEPLEEDIIDNPRARSAKLRTAVKI 376


>gi|283850522|ref|ZP_06367810.1| S-adenosyl-methyltransferase MraW [Desulfovibrio sp. FW1012B]
 gi|283574093|gb|EFC22065.1| S-adenosyl-methyltransferase MraW [Desulfovibrio sp. FW1012B]
          Length = 325

 Score =  343 bits (881), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 123/307 (40%), Positives = 176/307 (57%), Gaps = 11/307 (3%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSC 73
           +  H+PVLL +V+  L   PG  ILDAT G GG+ +   +      +V+ LDRD  A+S 
Sbjct: 4   VPSHIPVLLREVVEFLAIRPGMRILDATAGLGGHIKGMLEAAGGEASVLGLDRDREALSE 63

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
               +  Y ++  L +  +S+    + + G   VD  + D G+SS+Q+D  +RGF F   
Sbjct: 64  AGRRLEAYGDRVRLVRTRYSRFPAALAEAGWETVDAALLDAGMSSLQLDDPERGFGFLTD 123

Query: 131 GPLDMRMSCS--GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           GPLDMRM     G SA  +VN A+   L  I+   GE+ QA RIA AIV  R++AP  TT
Sbjct: 124 GPLDMRMGVEDGGESAEGLVNLASFARLREIIREYGEDPQAGRIARAIVAERETAPITTT 183

Query: 189 QDLSSLIQKTVYFSKNN--RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           + L+ ++            R HPATR+FQALR+ VN+E+ EL + LR+    +  GG + 
Sbjct: 184 RRLAEVVAAAYPAKWRAMARQHPATRTFQALRMAVNDELGELEEFLRAIPGHIAPGGRVA 243

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           V+SFHSLEDRLVK+ F   +   +  R  ++    H A F+ +TKK V+  +E+VA N R
Sbjct: 244 VISFHSLEDRLVKRAFRLEATDCLCPREQIVCVCGHRARFRILTKKPVMAGEEEVAANSR 303

Query: 306 SRSAKLR 312
           +RSAKLR
Sbjct: 304 ARSAKLR 310


>gi|86140630|ref|ZP_01059189.1| putative S-adenosyl-methyltransferase [Leeuwenhoekiella blandensis
           MED217]
 gi|85832572|gb|EAQ51021.1| putative S-adenosyl-methyltransferase [Leeuwenhoekiella blandensis
           MED217]
          Length = 298

 Score =  343 bits (881), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 103/304 (33%), Positives = 168/304 (55%), Gaps = 17/304 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H PVLL++ +  L   P  V +D TFG GG+SR   K   +   + A D+D  A+    +
Sbjct: 4   HNPVLLKETVDGLAIKPDGVYVDVTFGGGGHSREILKRLGDQGKLFAFDQDKDALDNALD 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +F+L    F   + ++   G   VDG++ D GVSS Q D  +RGFS +    L
Sbjct: 64  -----DPRFTLINENFRFAKRFLRFYGAAKVDGILGDFGVSSHQFDVAERGFSTRFDAKL 118

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+    +SA  VVN+ + +DL R+L   GE + A ++A  +V  R+    +TT+DL 
Sbjct: 119 DMRMNQDDKLSAYHVVNEYSEEDLGRVLLQYGELRSAPKLARTLVSVRKDKAIETTEDLK 178

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
             +Q  +   + +++    + +QA+RI VN E+E L + L+  E+ LK GG L ++S+HS
Sbjct: 179 QALQSYLPKGREHKL--LAQIYQAIRIEVNQELEVLKEFLQQTEEMLKPGGRLSLISYHS 236

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDRLVK++  +   +    + +  +   P  F+ +   ++VP++E++  N R+RSAKLR
Sbjct: 237 LEDRLVKRYMRNGLFEGEPEKDIFGNFTVP--FKKV-GGLIVPSKEEIKQNNRARSAKLR 293

Query: 313 AGMR 316
              +
Sbjct: 294 VAEK 297


>gi|126654823|ref|ZP_01726357.1| S-adenosyl-methyltransferase MraW [Cyanothece sp. CCY0110]
 gi|126623558|gb|EAZ94262.1| S-adenosyl-methyltransferase MraW [Cyanothece sp. CCY0110]
          Length = 304

 Score =  343 bits (881), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 113/317 (35%), Positives = 165/317 (52%), Gaps = 31/317 (9%)

Query: 9   MSSAIHH----TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI-- 62
           M++  H     +   H PVL ++VI  L   P    LDAT G GG+SR   +   +V   
Sbjct: 1   MTNIDHSNQSVSPNLHTPVLCQEVIEGLAIEPNGHYLDATLGRGGHSRLILEAFPDVRVT 60

Query: 63  ALDRDPFAVSCGQETMRDYKE-QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCG 121
            +D D  A++  Q+ + +  E +F ++Q  F+           +G++ DLGVSS Q D  
Sbjct: 61  GIDLDGEAIATTQDNLSEIAENRFQVWQGNFADYPGETAQ--FNGILADLGVSSPQFDVP 118

Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF+    LDMRM+    ++A++++N  +   L  +    GEE+++  IA  IV++R
Sbjct: 119 ERGFSFRHEAVLDMRMNREQSLTAAEIINHWDQTSLADLFYQYGEERRSRPIARRIVQQR 178

Query: 181 QSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
              PF+TT +L+  I K      +  RIHPATR FQALRI VN+E+  L + L  A   L
Sbjct: 179 ---PFETTTELAEAIAKCFPPKQRYGRIHPATRVFQALRIAVNDELGSLERFLEKAPHWL 235

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
           K GG + ++SFHSLEDR VK  F                     +   +TKK ++   E+
Sbjct: 236 KPGGRIGIISFHSLEDRRVKYSFRDS-----------------LLLDVVTKKPMIAQPEE 278

Query: 300 VAFNRRSRSAKLRAGMR 316
              N RSRSAKLR   R
Sbjct: 279 REKNPRSRSAKLRFAQR 295


>gi|260495075|ref|ZP_05815204.1| MraW methylase [Fusobacterium sp. 3_1_33]
 gi|260197518|gb|EEW95036.1| MraW methylase [Fusobacterium sp. 3_1_33]
          Length = 314

 Score =  343 bits (881), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 106/308 (34%), Positives = 170/308 (55%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+PVL  + +  L   P  V +D T G G +S    +  S+   +I++D+D  A+   ++
Sbjct: 9   HIPVLYYETLDNLVINPDGVYIDCTLGGGSHSEGILERLSDKGLLISIDQDSTAIEYSKK 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  +  ++ +F+  F  +       GVD   G++ D+GVSS Q+D   RGFS++    L
Sbjct: 69  RLEKFGSKWKVFKGNFENIDTIAYMAGVDKVDGILMDIGVSSKQLDDPKRGFSYRYDVKL 128

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+    ISA D+VN    + L++I+   GEE+ A +IA  IV+ R+S+P   T DL 
Sbjct: 129 DMRMNTDQKISAYDIVNTYTEEQLSKIIFEYGEERHARKIAKLIVEERKSSPIGKTSDLI 188

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +LI++     +    HPA ++FQA+RI VN E+E L   +  A + LK GG L +++FHS
Sbjct: 189 TLIKRAYP--ERASKHPAKKTFQAIRIEVNRELEVLGNAISKAAELLKVGGRLAIITFHS 246

Query: 253 LEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK  F   +      +   I        F+ ITKK ++P  +++  N R+ S+KL
Sbjct: 247 LEDRIVKNKFKDLATACKCPKDIPICVCGGVKKFEIITKKPIIPIDDELKNNNRAHSSKL 306

Query: 312 RAGMRTVE 319
           R   R ++
Sbjct: 307 RILERILD 314


>gi|167586011|ref|ZP_02378399.1| S-adenosyl-methyltransferase MraW [Burkholderia ubonensis Bu]
          Length = 313

 Score =  343 bits (881), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 112/312 (35%), Positives = 173/312 (55%), Gaps = 19/312 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  + +D TFG GG+SR+          +IA D+DP A+   Q 
Sbjct: 7   HRTVLLDEAVDALVTRPDGIYVDGTFGRGGHSRAVLARLGAAGRLIAFDKDPRAIETAQ- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +F++   +F+ +Q  +  +G   V GV+ DLGVSS Q+D   RGFSF+  GPL
Sbjct: 66  --GIEDARFAIVHDSFASMQGALAARGIGKVSGVLLDLGVSSPQVDDPQRGFSFRADGPL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS----APFQTT 188
           DMRM  + G SA++ + +A++++LT ++   GEE+ A +IA A+V RR       P  +T
Sbjct: 124 DMRMDPTRGESAAEWLARASLQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDST 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ ++   V   +     PATR+FQA+RI VN E+ +L   L +A   L+ GG L+V+
Sbjct: 184 GELAQIVGHVVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVI 242

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           SFHSLEDR+VK+F  + +      R +     +      + I +K   P+  +VA N R+
Sbjct: 243 SFHSLEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPPLKIIGRK--FPSDAEVAANPRA 300

Query: 307 RSAKLRAGMRTV 318
           RSA +R   R  
Sbjct: 301 RSAVMRIAERVA 312


>gi|119493501|ref|ZP_01624168.1| S-adenosyl-methyltransferase [Lyngbya sp. PCC 8106]
 gi|119452684|gb|EAW33864.1| S-adenosyl-methyltransferase [Lyngbya sp. PCC 8106]
          Length = 291

 Score =  343 bits (881), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 117/306 (38%), Positives = 164/306 (53%), Gaps = 30/306 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCGQET 77
           H+PVL  ++IA L    G   LDAT G GG+S    +   +V   A+D+D  A++  +  
Sbjct: 6   HIPVLSRELIAGLFVVAGGHYLDATVGGGGHSLLILQAAPDVRITAIDQDEVAIAATRAR 65

Query: 78  MRD----YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           + +    + ++   ++  F+  Q        DG++ DLGV+S Q+D   RGFSF+ S PL
Sbjct: 66  LAEVEPCFADRVQFWRGNFADYQP--QGMQFDGIIADLGVNSSQLDTPTRGFSFRHSAPL 123

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+    +SA+D++N  +  +L  I    GEE+ + RIA  IV+ R   PF+TT  L+
Sbjct: 124 DMRMNLQQSLSAADIINTWDEGELADIFFHYGEERLSRRIARRIVQNR---PFETTTQLA 180

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +I        +  RIHPATR FQALRI VN E+  L   L  A + LK GG + V+SFH
Sbjct: 181 DVIASCYPSKSRYGRIHPATRVFQALRIAVNQELTALETFLSRAPQWLKLGGRIGVISFH 240

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR VK+ F S S                   Q +TKK +     ++A N RSRSAKL
Sbjct: 241 SLEDRRVKQSFKSDSD-----------------LQVLTKKPIQAQALEIADNPRSRSAKL 283

Query: 312 RAGMRT 317
           R   R 
Sbjct: 284 RLAERI 289


>gi|134095979|ref|YP_001101054.1| S-adenosyl-methyltransferase MraW [Herminiimonas arsenicoxydans]
 gi|263456141|sp|A4G8U6|RSMH_HERAR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|133739882|emb|CAL62933.1| S-adenosyl-dependent methyl transferase MraW [Herminiimonas
           arsenicoxydans]
          Length = 321

 Score =  343 bits (880), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 106/316 (33%), Positives = 171/316 (54%), Gaps = 18/316 (5%)

Query: 20  HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSC 73
           H  VLLE+ +  L         + +D TFG GG+SR   +       ++A D+D  A++ 
Sbjct: 11  HRTVLLEEAVDALALDGERANGMYVDGTFGRGGHSRLILQRLGENGCLLAFDKDTQAIAN 70

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
                    ++F++   +F+ L   + ++G   V+GV+ DLG+SS Q+D   RGFSF+  
Sbjct: 71  AATI---EDKRFAIVHDSFATLSTALAERGIAQVNGVLLDLGISSPQVDDAARGFSFRAD 127

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
           GPLDMRM  + GISA++ +     + + +++   GEE+ A +IA AIV  R   P  +T+
Sbjct: 128 GPLDMRMDTTRGISAAEWLATETEQKIEKVIREYGEERFAFQIAKAIVAGRAVQPISSTR 187

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            L+ ++ + V   +     PATR+FQA+RIF+N E+EEL   L  A + L   G L+V+S
Sbjct: 188 QLAEIVARAVKT-REKGKDPATRTFQAIRIFINQELEELEVVLNEAYRHLAPHGRLVVIS 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           FHSLEDR+VK+F AS++      R +     +      + I +  + P+  +++ N R+R
Sbjct: 247 FHSLEDRIVKQFMASKANVPQPDRRLPIRAVDLPQPEMKLIAR--IKPSAAEISANPRAR 304

Query: 308 SAKLRAGMRTVERSIE 323
           SA +R   R       
Sbjct: 305 SAVMRVAERLPTPGAA 320


>gi|327313078|ref|YP_004328515.1| S-adenosyl-methyltransferase MraW [Prevotella denticola F0289]
 gi|326945605|gb|AEA21490.1| S-adenosyl-methyltransferase MraW [Prevotella denticola F0289]
          Length = 314

 Score =  343 bits (880), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 111/306 (36%), Positives = 169/306 (55%), Gaps = 13/306 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPFAVSCGQE 76
           HVPVLL + I  LN   G + +D TFG GG+SR      + GS++ + D+D  A      
Sbjct: 9   HVPVLLNESIEGLNLHAGGIYVDVTFGGGGHSREILSRLEAGSHLYSFDQDADAEQNIGR 68

Query: 77  --TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                +  ++F+  ++ F  L++++    V   DG++ DLGVSS   D   RGFSF+   
Sbjct: 69  MGLSSEQVDRFTFIRSNFRYLKNWMRYYSVPHIDGLLADLGVSSHHFDDETRGFSFRFEA 128

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+  +G++A+D++N+ + + L  IL + GE KQ+ RIA AIVK R+   ++TT D
Sbjct: 129 PLDMRMNKRAGMTAADILNEYDEEHLADILYLYGELKQSRRIAAAIVKGREQKAYKTTND 188

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L  L+    +F +        + FQALRI VN E++ L + L +A   L  GG L V+++
Sbjct: 189 L--LVITDPFFRRAREKKDMAKLFQALRIEVNYEMDALREMLLAAIGLLSPGGRLSVITY 246

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDR+VK    S + +    +        P  F+ +  KV+    ++   N RSRSAK
Sbjct: 247 HSLEDRMVKNVMKSGNIEGKVSQDFFGRIDTP--FRLVNSKVITANNDEQERNPRSRSAK 304

Query: 311 LRAGMR 316
           LR   +
Sbjct: 305 LRIAEK 310


>gi|325856519|ref|ZP_08172208.1| S-adenosyl-methyltransferase MraW [Prevotella denticola CRIS 18C-A]
 gi|325483488|gb|EGC86461.1| S-adenosyl-methyltransferase MraW [Prevotella denticola CRIS 18C-A]
          Length = 314

 Score =  343 bits (880), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 110/306 (35%), Positives = 169/306 (55%), Gaps = 13/306 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPFAVSCGQE 76
           HVPVLL + I  LN   G + +D TFG GG+SR      + GS++ + D+D  A      
Sbjct: 9   HVPVLLNESIEGLNLHAGGIYVDVTFGGGGHSREILSRLEAGSHLYSFDQDADAEQNIGR 68

Query: 77  --TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                +  ++F+  ++ F  L++++    V   DG++ DLGVSS   D   RGFSF+   
Sbjct: 69  MGLSSEQVDRFTFIRSNFRYLKNWMRYYSVPHIDGLLADLGVSSHHFDDETRGFSFRFEA 128

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+  +G++A+D++N+ + + L  IL + GE KQ+ RIA AIVK R+   ++TT D
Sbjct: 129 PLDMRMNKRAGMTAADILNEYDEEHLADILYLYGELKQSRRIAAAIVKGREQKAYKTTND 188

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L ++     +F +        + FQALRI VN E++ L + L +A   L  GG L V+++
Sbjct: 189 LLAITDP--FFRRAREKKDMAKLFQALRIEVNYEMDALREMLLAAIGLLSPGGRLSVITY 246

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDR+VK    S + +    +        P  F+ +  KV+    ++   N RSRSAK
Sbjct: 247 HSLEDRMVKNVMKSGNIEGKVSQDFFGRIDTP--FRLVNSKVITANNDEQERNPRSRSAK 304

Query: 311 LRAGMR 316
           LR   +
Sbjct: 305 LRIAEK 310


>gi|325001098|ref|ZP_08122210.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudonocardia sp. P1]
          Length = 337

 Score =  343 bits (880), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 112/318 (35%), Positives = 172/318 (54%), Gaps = 10/318 (3%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSNV--IAL 64
           +         H PVLLE+V ALL PA      V +DAT G GG++ +       +  + L
Sbjct: 6   TGPDPSPAERHTPVLLERVSALLAPAIADRPAVYVDATLGMGGHAAALLATHPQLTVVGL 65

Query: 65  DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCG 121
           DRDP A+      +  Y ++     A + ++ + + + GV   D ++FDLGVSS+Q+D  
Sbjct: 66  DRDPQALDLAGRRLTAYADRLRPVHAVYDRIGEALDETGVGPADAILFDLGVSSLQLDEV 125

Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFS+ +   LDMRM  + G +A+DV+N      L RIL   GEE+ A  IA+AIV+ R
Sbjct: 126 ERGFSYSRDADLDMRMDPTTGPTAADVLNTYTAPQLRRILREYGEERFAGPIANAIVRNR 185

Query: 181 QSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
              PF  + +L  L+   V  + +    HPA R+FQALRI VN E++ L   L +A  AL
Sbjct: 186 DKRPFTRSAELVELLYGVVPAASRRTGGHPAKRTFQALRIEVNAELDVLRDALPAAFDAL 245

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
             GG ++V+++HSLEDR+ K+  A R+     +   +    H   F+ +T+     + ++
Sbjct: 246 APGGRIVVLAYHSLEDRITKRALAERTRSRTPLDLPVELPGHEPEFRLLTRGAETASDDE 305

Query: 300 VAFNRRSRSAKLRAGMRT 317
           +  N R+   +LRA  RT
Sbjct: 306 IERNPRAAPVRLRAAERT 323


>gi|99034246|ref|ZP_01314308.1| hypothetical protein Wendoof_01000895 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 314

 Score =  343 bits (880), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 127/323 (39%), Positives = 183/323 (56%), Gaps = 39/323 (12%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQETM 78
           H PVLL+++++LL+P  G + +DATFGAGGYS++  +     V A+DRD        +  
Sbjct: 3   HTPVLLKEMLSLLSPQDGGIYVDATFGAGGYSKAILESADCKVYAIDRDETVTKFYDDLS 62

Query: 79  RDYKEQFSLFQATFSQLQDYVPD------------------------KGVDGVVFDLGVS 114
             Y ++  LF   FS ++  +                           GVDGVVFD+GVS
Sbjct: 63  VRYPDRIKLFIEKFSNIKSILSSVKPSPVIPVLDTGKNNWSRAGMTSNGVDGVVFDIGVS 122

Query: 115 SMQIDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIA 173
           SMQ+D GDRGFSF   GPLDM M  S  I+AS  VN    +++   +   G E+ + +IA
Sbjct: 123 SMQLDNGDRGFSFLHDGPLDMSMDNSSYINASTFVNALREEEIANTIYNYGGERHSRKIA 182

Query: 174 HAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLR 233
            AI+  R+    +TT +L+ +++  V+  K ++I PATR+FQA+RI+VN+E+EEL +G++
Sbjct: 183 RAIINARKKKTIKTTFELADIVRSVVFRGK-SKIDPATRTFQAIRIWVNDELEELEKGIK 241

Query: 234 SAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV 293
           +A + L   G LIVV+FHSLEDR+VK FF                      F  + KKV+
Sbjct: 242 AASEILSENGKLIVVTFHSLEDRIVKTFFKDLCATDC------------KTFSLLNKKVI 289

Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316
             + E+V+ N RSRSAKLRA  R
Sbjct: 290 EASIEEVSANPRSRSAKLRAIQR 312


>gi|115350509|ref|YP_772348.1| S-adenosyl-methyltransferase MraW [Burkholderia ambifaria AMMD]
 gi|123322723|sp|Q0BIK9|RSMH_BURCM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|115280497|gb|ABI86014.1| S-adenosyl-methyltransferase MraW [Burkholderia ambifaria AMMD]
          Length = 313

 Score =  343 bits (880), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 114/311 (36%), Positives = 177/311 (56%), Gaps = 19/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  + +D TFG GG+SR+       G  +IA D+DP A+    +
Sbjct: 7   HRTVLLDEAVESLVTRPDGIYVDGTFGRGGHSRAVLARLAEGGRLIAFDKDPRAIETA-Q 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + D   +FS+   +F+ ++D +  +G   V GV+ DLGVSS Q+D   RGFSF+  GPL
Sbjct: 66  RIEDA--RFSIVHDSFASMRDALAARGIEKVSGVLLDLGVSSPQVDDPARGFSFRADGPL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS----APFQTT 188
           DMRM  + G SA++ + +A+V++LT ++   GEE+ A +IA A+V RR       P  TT
Sbjct: 124 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDTT 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ ++   V   +     PATR+FQA+RI VN E+ +L   L +A   L+ GG L+V+
Sbjct: 184 GELAQIVGHVVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVI 242

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           SFHSLEDR+VK+F  + +      R +     +      + I++    P++ +V  N R+
Sbjct: 243 SFHSLEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPPLKIISR--QFPSEAEVVANPRA 300

Query: 307 RSAKLRAGMRT 317
           RSA +R   R 
Sbjct: 301 RSAVMRIAERV 311


>gi|73988949|ref|XP_534100.2| PREDICTED: similar to methyltransferase 5 domain containing 1
           [Canis familiaris]
          Length = 694

 Score =  343 bits (880), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 129/335 (38%), Positives = 187/335 (55%), Gaps = 38/335 (11%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H+PV++++V+  L P  G++ LD TFG+GG++R+  +  S+  + ALDRDP A +  ++ 
Sbjct: 359 HIPVMVDEVVRCLAPQKGQIFLDMTFGSGGHTRAILQKESDITLYALDRDPTAYAIAEQL 418

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              Y +Q       FSQ +  +   GV     DGV+ D G SSMQ+D  +RGFS +K GP
Sbjct: 419 SELYPKQIRALLGQFSQAEALLMKAGVQPGTLDGVLLDPGCSSMQLDAPERGFSLRKDGP 478

Query: 133 LDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           LDMRM         +A+DVVN  + + L  IL   GEEK A +IA AIV+ R   P   T
Sbjct: 479 LDMRMDGGRYPDMPTAADVVNALDQQALASILRTYGEEKHAKKIASAIVQARSLYPISRT 538

Query: 189 QDLSSLIQKTVY----FSKN----NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           Q L+S++         F++        H AT++FQA RIFVNNE+ EL  GL++A+K L+
Sbjct: 539 QQLASIVAGAFPPSAVFARKDLLQRSTHIATKTFQAFRIFVNNELNELYTGLKTAQKFLR 598

Query: 241 AGGLLIVVSFHSLEDRLVKKFF-------------------ASRSGKVMAVRHMIPSNAH 281
            GG L+ +SFHSLEDR+VK+F                    A + G           +  
Sbjct: 599 PGGRLVALSFHSLEDRIVKRFLLGISMTERFNLSARQKVIQALKLGSGRENMEGASISKA 658

Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           P +++ I KKV+ P  ++V  N R+RSAKLRA ++
Sbjct: 659 PLMWELIHKKVLTPDDQEVQENPRARSAKLRAAIK 693


>gi|226941977|ref|YP_002797051.1| S-adenosyl-methyltransferase MraW [Laribacter hongkongensis HLHK9]
 gi|263456276|sp|C1D5M5|RSMH_LARHH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|226716904|gb|ACO76042.1| MraW [Laribacter hongkongensis HLHK9]
          Length = 317

 Score =  343 bits (880), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 115/308 (37%), Positives = 167/308 (54%), Gaps = 13/308 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           HV VLL++ +  L   P  V +D TFG GG+SR           ++A D+DP A++   E
Sbjct: 7   HVTVLLQEAVEALAIRPDGVYVDCTFGRGGHSRLVLSRLGPAGRLVAFDKDPQAIAVATE 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  + ++    F+ L   +   G   VDGV+ DLGVSS QID   RGFSF+   PL
Sbjct: 67  L---DDPRLTIVHEGFAGLDRELDRLGIDKVDGVLMDLGVSSPQIDDASRGFSFRFDAPL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF-QTTQDL 191
           DMRM  + G +A+D + +A+  ++  ++   GEE+ A+ IA AIV  R    F  TT +L
Sbjct: 124 DMRMDTTRGETAADWLARADEAEIRTVIRDYGEERFAASIARAIVANRLEGQFLTTTGEL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           ++L  + V  ++     PATR+FQA+RIF+N E++EL   L  A + L+ GG L+V++FH
Sbjct: 184 AALCARCV-RTREKGQDPATRTFQAIRIFINRELDELQAVLPQAVRRLRPGGRLVVIAFH 242

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK F    S      R +    A  P     +  K V    E +A N R+RSA 
Sbjct: 243 SLEDRIVKLFLRDASSPPELPRGLPVRAADLPEPPLRLVGKPVREGDEQLARNPRARSAI 302

Query: 311 LRAGMRTV 318
           +R   R+ 
Sbjct: 303 MRVAERSA 310


>gi|325954324|ref|YP_004237984.1| ribosomal RNA small subunit methyltransferase H [Weeksella virosa
           DSM 16922]
 gi|323436942|gb|ADX67406.1| Ribosomal RNA small subunit methyltransferase H [Weeksella virosa
           DSM 16922]
          Length = 301

 Score =  343 bits (880), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 105/304 (34%), Positives = 165/304 (54%), Gaps = 17/304 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H PVLL++ +  L   P  V +D TFG GG+SR           + A D+D  A     E
Sbjct: 7   HNPVLLQESVDALVVNPSGVYVDCTFGGGGHSREILSRLDDNGRLYAFDQDEDAKQNKIE 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                 E+F L    F  L++ +  +GV   DG++ DLGVSS Q D  +RGFS +  G L
Sbjct: 67  -----DERFELIDQNFRYLKNNLRFRGVKQVDGILADLGVSSHQFDTPERGFSIRFDGEL 121

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  S +SA ++VN+ +   L  I    GE K + R+A  I+K R +   +T + L 
Sbjct: 122 DMRMNINSSLSAKNIVNEYDEDQLADIFYNYGELKGSRRLASEIIKARNNQSIETIEHLK 181

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +     +  KN       + FQALRI VN+E+  L + L  + + ++  G L+V+S+HS
Sbjct: 182 DIFS---FIPKNKENKFFAQVFQALRIEVNDEMAALREMLLQSGEIVRPEGRLVVISYHS 238

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDRLVK++  +   +    R +  + + P  F+ +  KV+VP+++++  N R+RSAK+R
Sbjct: 239 LEDRLVKRYMRNGVFEGEPERDIYGNWSAP--FKPLQSKVIVPSEKEIEENSRARSAKMR 296

Query: 313 AGMR 316
             ++
Sbjct: 297 IAVK 300


>gi|89074178|ref|ZP_01160677.1| S-adenosyl-methyltransferase [Photobacterium sp. SKA34]
 gi|89050114|gb|EAR55640.1| S-adenosyl-methyltransferase [Photobacterium sp. SKA34]
          Length = 315

 Score =  343 bits (880), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 116/313 (37%), Positives = 173/313 (55%), Gaps = 19/313 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
           +HV VLL + +  L   P  + +D TFG GG+SR           + ++DRDP A++  Q
Sbjct: 6   EHVSVLLNESVDGLAIKPDGIYIDGTFGRGGHSRLILSHLGENGRLYSIDRDPQAIAEAQ 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +       +F +    FS ++ Y+ ++     VDGV+ DLGVSS Q+D  +RGFSF + G
Sbjct: 66  KI---DDPRFEIIHGPFSGMEKYMEERDLIGRVDGVLLDLGVSSPQLDDAERGFSFMRDG 122

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ---SAPFQT 187
           PLDMRM   SG SA++ + +A   D+  +L   GEE+ A RIA  IV+ R+     P   
Sbjct: 123 PLDMRMDPTSGQSAAEWLAEAEADDIAWVLKEFGEERFAKRIARGIVEHRENPEKEPLTR 182

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T++L+SLI     F K+   HPATRSFQA+RI++N+E++E+   L  A   L   G L V
Sbjct: 183 TRELASLIAAVSPF-KDKHKHPATRSFQAIRIYINSELDEIETALNGAVNILAPEGRLSV 241

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVVVPTQEDVAFN 303
           +SFHSLEDR+VK+F   +S        +  +                K + P+Q+++ +N
Sbjct: 242 ISFHSLEDRMVKRFIRKQSKGPEVPAGLPLTEEQIKALGSAALKTVGKAIKPSQDELGYN 301

Query: 304 RRSRSAKLRAGMR 316
            R+RS+ LR   R
Sbjct: 302 TRARSSVLRLAQR 314


>gi|254246426|ref|ZP_04939747.1| S-adenosyl-methyltransferase [Burkholderia cenocepacia PC184]
 gi|124871202|gb|EAY62918.1| S-adenosyl-methyltransferase [Burkholderia cenocepacia PC184]
          Length = 319

 Score =  343 bits (880), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 115/311 (36%), Positives = 175/311 (56%), Gaps = 19/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  V +D TFG GG+SR+          +IA D+DP A+   Q 
Sbjct: 13  HRTVLLDEAVESLVTRPDGVYVDGTFGRGGHSRAVLARLASAGRLIAFDKDPRAIETAQ- 71

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +FS+   +F+ ++D +  +GV    GV+ DLGVSS Q+D   RGFSF+  GPL
Sbjct: 72  --GIEDARFSIVHDSFASMRDALAARGVEKVSGVLLDLGVSSPQVDDPARGFSFRADGPL 129

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS----APFQTT 188
           DMRM  + G SA++ + +A+V++LT ++   GEE+ A +IA A+V RR       P  TT
Sbjct: 130 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDTT 189

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ ++   V   +     PATR+FQA+RI VN E+ +L   L +A   L+ GG L+V+
Sbjct: 190 GELAQIVGHVVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVI 248

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           SFHSLEDR+VK+F  + +      R +     +      + I++    P++ +VA N R+
Sbjct: 249 SFHSLEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPPLKIISR--QFPSEAEVAANPRA 306

Query: 307 RSAKLRAGMRT 317
           RSA +R   R 
Sbjct: 307 RSAVMRIAERV 317


>gi|42520071|ref|NP_965986.1| S-adenosyl-methyltransferase MraW [Wolbachia endosymbiont of
           Drosophila melanogaster]
 gi|88912336|sp|P62478|RSMH_WOLPM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|42409808|gb|AAS13920.1| S-adenosyl-methyltransferase MraW [Wolbachia endosymbiont of
           Drosophila melanogaster]
          Length = 314

 Score =  343 bits (880), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 127/323 (39%), Positives = 183/323 (56%), Gaps = 39/323 (12%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQETM 78
           H PVLL+++++LL+P  G + +DATFGAGGYS++  +     V A+DRD        +  
Sbjct: 3   HTPVLLKEMLSLLSPQDGGIYVDATFGAGGYSKAILESADCKVYAIDRDETVTKFYDDLS 62

Query: 79  RDYKEQFSLFQATFSQLQDYVPD------------------------KGVDGVVFDLGVS 114
             Y ++  LF   FS ++  +                           GVDGVVFD+GVS
Sbjct: 63  VRYPDRIKLFIEKFSNIKSILSSVEPSPVIPVLDTGKNNWSRAGMTSNGVDGVVFDIGVS 122

Query: 115 SMQIDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIA 173
           SMQ+D GDRGFSF   GPLDM M  S  I+AS  VN    +++   +   G E+ + +IA
Sbjct: 123 SMQLDNGDRGFSFLHDGPLDMSMDNSSYINASTFVNALREEEIANTIYNYGGERHSRKIA 182

Query: 174 HAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLR 233
            AI+  R+    +TT +L+ +++  V+  K ++I PATR+FQA+RI+VN+E+EEL +G++
Sbjct: 183 RAIINARKKKTIKTTFELADIVRSVVFRGK-SKIDPATRTFQAIRIWVNDELEELEKGIK 241

Query: 234 SAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV 293
           +A + L   G LIVV+FHSLEDR+VK FF                      F  + KKV+
Sbjct: 242 AASEILSENGKLIVVTFHSLEDRIVKTFFKDLCATDC------------KTFSLLNKKVI 289

Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316
             + E+V+ N RSRSAKLRA  R
Sbjct: 290 EASIEEVSANPRSRSAKLRAIQR 312


>gi|220933941|ref|YP_002512840.1| S-adenosyl-methyltransferase MraW [Thioalkalivibrio sp. HL-EbGR7]
 gi|262825935|sp|B8GMM1|RSMH_THISH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|219995251|gb|ACL71853.1| S-adenosyl-methyltransferase MraW [Thioalkalivibrio sp. HL-EbGR7]
          Length = 314

 Score =  343 bits (880), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 121/308 (39%), Positives = 168/308 (54%), Gaps = 11/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H  VLLE+ +  L   P  + LD TFG GG+S    +       +IALDRDP A +    
Sbjct: 9   HRAVLLEEAVEALAVRPDGIYLDGTFGRGGHSGRILERLGPDGRLIALDRDPEAEAEAAR 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              D  E+F   + +F  LQ      G+    DGV+ DLGVSS Q+D  +RGFSF   GP
Sbjct: 69  RFGD-DERFHFERCSFEMLQQVTDRLGISGRLDGVLLDLGVSSPQLDTPERGFSFMSDGP 127

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM   SG SA+  + +AN  ++  +L   GEE+ A RIA  IV+ RQ  P + T+ L
Sbjct: 128 LDMRMDPESGESAAAWLARANEDEIAWVLKEYGEERFARRIARRIVETRQEMPLERTRQL 187

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI + V F + ++ HPATRSFQA+RI VN+E+E L + L      L  GG L V+SFH
Sbjct: 188 AELIAEAVPFKERHK-HPATRSFQAIRIRVNDELETLPRCLEQIPALLAPGGRLAVISFH 246

Query: 252 SLEDRLVKKFFA-SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK+F      G+ +     +  +A       +  + +   + ++  N R+RSA 
Sbjct: 247 SLEDRMVKRFLRDQAEGERLPRGLPVQGDARRGQTLRLVGRAIRAGEAELDQNPRARSAV 306

Query: 311 LRAGMRTV 318
           LR   R  
Sbjct: 307 LRVAERLA 314


>gi|163846346|ref|YP_001634390.1| S-adenosyl-methyltransferase MraW [Chloroflexus aurantiacus
           J-10-fl]
 gi|222524111|ref|YP_002568582.1| S-adenosyl-methyltransferase MraW [Chloroflexus sp. Y-400-fl]
 gi|263445774|sp|A9WG80|RSMH_CHLAA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446400|sp|B9LKK0|RSMH_CHLSY RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|163667635|gb|ABY34001.1| S-adenosyl-methyltransferase MraW [Chloroflexus aurantiacus
           J-10-fl]
 gi|222447990|gb|ACM52256.1| S-adenosyl-methyltransferase MraW [Chloroflexus sp. Y-400-fl]
          Length = 301

 Score =  343 bits (880), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 125/310 (40%), Positives = 179/310 (57%), Gaps = 22/310 (7%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73
              H PVLL +V+ +L P P    LDAT G GG++ +  +    G  ++ +D DP A++ 
Sbjct: 4   TFQHTPVLLTEVLTMLAPRPAGQYLDATVGGGGHALAVLQAAQPGGRLLGIDADPAALAA 63

Query: 74  GQETMRDYK--EQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQ 128
               ++     EQ  L   +F+ L       G    DG++FDLGVSS Q+D  +RGFSF 
Sbjct: 64  TAARLQAAGLIEQAVLCHGSFADLATLAATAGFGAFDGILFDLGVSSYQLDTPERGFSFT 123

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
             GPLDMR+  + G++A+D+VN+ + ++L  I+ + GEE  A RIA AIV+ R++ PFQ 
Sbjct: 124 ADGPLDMRLDPTQGLTAADMVNRLSERELADIIFLYGEEHAARRIARAIVEHRRTQPFQR 183

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T +L+ ++ + V   ++ RIHPATR+FQALRI VN E++ L   L  A   L  GG L V
Sbjct: 184 TAELAEVVARAV-GGRHGRIHPATRTFQALRIAVNQELDRLRATLPQAVDLLAPGGRLAV 242

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +SFHSLEDR+VK+F  + +                     +TKK +VPT  +VA N R+R
Sbjct: 243 ISFHSLEDRIVKQFLRAEAS------------GETPRLTIVTKKPIVPTAAEVANNPRAR 290

Query: 308 SAKLRAGMRT 317
           SAKLR   R 
Sbjct: 291 SAKLRVATRI 300


>gi|170696713|ref|ZP_02887828.1| S-adenosyl-methyltransferase MraW [Burkholderia graminis C4D1M]
 gi|170138376|gb|EDT06589.1| S-adenosyl-methyltransferase MraW [Burkholderia graminis C4D1M]
          Length = 317

 Score =  342 bits (879), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 118/323 (36%), Positives = 181/323 (56%), Gaps = 20/323 (6%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           M+SA+ + +  H  VLLE+ +A L      V +D TFG GG+SR   +       +IA D
Sbjct: 1   MASAMRNELQ-HRTVLLEEAVAALVTRADGVYVDGTFGRGGHSRLVLEKLGQAGRLIAFD 59

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGD 122
           +DP A++  Q+       +F +   +F+ L+  + ++G   V GV+ DLGVSS Q+D  +
Sbjct: 60  KDPLAIATAQQI---GDPRFGIVHESFASLRTAIAERGIERVSGVLLDLGVSSPQVDDPE 116

Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF+  GPLDMRM  + G SA+D + +A V++LT ++   GEE+ A +IA A+V RR 
Sbjct: 117 RGFSFRADGPLDMRMDPTRGESAADWLARATVQELTEVIRDYGEERFAFQIAKALVARRA 176

Query: 182 S----APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
                 P  +T +L+ ++   V   +     PATR+FQA+RI +N E+ EL   L +A  
Sbjct: 177 ESDRLGPLVSTGELAQIVANVVKT-REKGKDPATRTFQAIRIHINQELAELQVVLEAALS 235

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVP 295
            L+ GG L+V+SFHSLEDR+VK+F  + +      R +     +      + I +  V  
Sbjct: 236 LLEQGGRLVVISFHSLEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPPLKIIGR--VFA 293

Query: 296 TQEDVAFNRRSRSAKLRAGMRTV 318
           +  +VA N R+RSA +R   R  
Sbjct: 294 SDAEVAANPRARSAVMRVAERIA 316


>gi|90580220|ref|ZP_01236027.1| S-adenosyl-methyltransferase [Vibrio angustum S14]
 gi|90438522|gb|EAS63706.1| S-adenosyl-methyltransferase [Vibrio angustum S14]
          Length = 315

 Score =  342 bits (879), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 116/313 (37%), Positives = 173/313 (55%), Gaps = 19/313 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
           +HV VLL + +  L   P  + +D TFG GG+SR           + ++DRDP A++  Q
Sbjct: 6   EHVSVLLNESVDGLAIKPDGIYIDGTFGRGGHSRLILSHLGENGRLYSIDRDPQAIAEAQ 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +       +F +    FS ++ Y+ ++     VDGV+ DLGVSS Q+D  +RGFSF + G
Sbjct: 66  KI---DDPRFEIIHGPFSGMEKYMEERDLIGRVDGVLLDLGVSSPQLDDAERGFSFMRDG 122

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ---SAPFQT 187
           PLDMRM   SG SA++ + +A   D+  +L   GEE+ A RIA  IV+ R+     P   
Sbjct: 123 PLDMRMDPTSGQSAAEWLAEAEADDIAWVLKEFGEERFAKRIARGIVEHRENPEKEPLTR 182

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T++L+SLI     F K+   HPATRSFQA+RI++N+E++E+   L  A   L   G L V
Sbjct: 183 TRELASLIAAVSPF-KDKHKHPATRSFQAIRIYINSELDEIETALNGAVNILAPEGRLSV 241

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVVVPTQEDVAFN 303
           +SFHSLEDR+VK+F   +S        +  +                K + P+Q+++ +N
Sbjct: 242 ISFHSLEDRMVKRFIRKQSKGPEVPAGLPLTEEQIKALGSAALKTLGKAIKPSQDELGYN 301

Query: 304 RRSRSAKLRAGMR 316
            R+RS+ LR   R
Sbjct: 302 TRARSSVLRLAER 314


>gi|300021770|ref|YP_003754381.1| S-adenosyl-methyltransferase MraW [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299523591|gb|ADJ22060.1| S-adenosyl-methyltransferase MraW [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 345

 Score =  342 bits (879), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 124/293 (42%), Positives = 187/293 (63%), Gaps = 8/293 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQETM 78
           H+PVL  +V+  L P  G+  +D TFGAGGY+R+  +     V+ALDRDP A+      +
Sbjct: 21  HIPVLRSEVLETLAPKAGETYIDGTFGAGGYTRAILEAADCRVLALDRDPNAIRGAAPLL 80

Query: 79  RDYKEQFSLFQATFSQLQDY----VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
            ++  + +L ++ FS+L++     +    VDGVV D+GVSSMQ+D  +RGFSFQ  GPLD
Sbjct: 81  AEFAPRLTLVESPFSRLEEVAQDALGGAQVDGVVLDIGVSSMQLDDAERGFSFQHDGPLD 140

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRMS +G + +D VN A  + +  ++   GEE ++  IA AIV+RR   P+  T++L+  
Sbjct: 141 MRMSSNGQTVADFVNSAAEEIIANVIYAFGEEHKSRAIARAIVRRRAETPYARTRELADT 200

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           + +  +  K +  HPATR+FQALRIF+N+E+ ELA  L +AE+ L+ GG L+VVSFHSLE
Sbjct: 201 VSRVFHGRKVDGRHPATRTFQALRIFINDELGELASALSAAERVLRPGGRLVVVSFHSLE 260

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSN---AHPAVFQSITKKVVVPTQEDVAFNR 304
           DR+VKKF A RSGK  +V   +P+    + P  F+ +  + + P++ ++  N 
Sbjct: 261 DRIVKKFIAERSGKTQSVSRHLPTETIKSTPPSFRIVNSRPLTPSKGELDVNP 313


>gi|225677071|ref|ZP_03788076.1| S-adenosyl-methyltransferase [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
 gi|225590893|gb|EEH12115.1| S-adenosyl-methyltransferase [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
          Length = 314

 Score =  342 bits (879), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 126/323 (39%), Positives = 182/323 (56%), Gaps = 39/323 (12%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQETM 78
           H PVLL+++++LL+P  G + +DATFGAGGYS++  +     V A+DRD        +  
Sbjct: 3   HTPVLLKEMLSLLSPQDGGIYVDATFGAGGYSKAILESADCKVYAIDRDETVTKFYDDLS 62

Query: 79  RDYKEQFSLFQATFSQLQDYVPD------------------------KGVDGVVFDLGVS 114
             Y ++  LF   FS ++  +                           GVDGVVFD+GVS
Sbjct: 63  VRYPDRIKLFIEKFSNIKSILSSVEPSPVIPVLDTGKNNWSRAGMTSNGVDGVVFDIGVS 122

Query: 115 SMQIDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIA 173
           SMQ+D GDRGFSF   GPLDM M  S  I+AS  VN    +++   +   G E+ + +IA
Sbjct: 123 SMQLDNGDRGFSFLHDGPLDMSMDNSSYINASTFVNALREEEIANTIYNYGGERHSRKIA 182

Query: 174 HAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLR 233
            AI+  R+    +TT +L+ +++  V+  K ++I PATR+FQA+RI+VN+E+ EL +G++
Sbjct: 183 RAIINARKKKTIKTTFELADIVRSVVFRGK-SKIDPATRTFQAIRIWVNDELGELEKGIK 241

Query: 234 SAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV 293
           +A + L   G LIVV+FHSLEDR+VK FF                      F  + KKV+
Sbjct: 242 AASEILSENGKLIVVTFHSLEDRIVKTFFKDLCATDC------------KTFSLLNKKVI 289

Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316
             + E+V+ N RSRSAKLRA  R
Sbjct: 290 EASIEEVSANPRSRSAKLRAIQR 312


>gi|187925450|ref|YP_001897092.1| S-adenosyl-methyltransferase MraW [Burkholderia phytofirmans PsJN]
 gi|263446934|sp|B2SYY3|RSMH_BURPP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|187716644|gb|ACD17868.1| S-adenosyl-methyltransferase MraW [Burkholderia phytofirmans PsJN]
          Length = 317

 Score =  342 bits (879), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 116/323 (35%), Positives = 179/323 (55%), Gaps = 20/323 (6%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M+ A+ + +  H  VLLE+ +  L      V +D TFG GG+SR   +       +IA D
Sbjct: 1   MAPAMGNELQ-HRTVLLEEAVQALVTRADGVYVDGTFGRGGHSRLVLEKLAESGRLIAFD 59

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGD 122
           +DP A++  Q+       +F +   +F+ L+  + ++GV    GV+ DLG+SS QID  +
Sbjct: 60  KDPLAIATAQQIA---DPRFGIVHESFASLRTAIAERGVGRVSGVLLDLGISSPQIDDPE 116

Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF+  GPLDMRM  + G SA+D + +A V++LT ++   GEE+ A +IA A+V RR 
Sbjct: 117 RGFSFRADGPLDMRMDPTRGESAADWLARATVQELTEVIRDYGEERFAFQIAKALVARRA 176

Query: 182 S----APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
                 P  +T +L+ ++   V   +     PATR+FQA+RI +N E+ EL   L +A  
Sbjct: 177 ESDRLGPLVSTGELAQIVANVVKT-REKGKDPATRTFQAIRIHINQELAELQVVLEAALS 235

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVP 295
            L+ GG L+V+SFHSLEDR+VK+F  + +      R +     +      + I +  V  
Sbjct: 236 LLEQGGRLVVISFHSLEDRIVKRFMQAHASTPAVDRRLPIRAVDLPSPPLKIIGR--VFA 293

Query: 296 TQEDVAFNRRSRSAKLRAGMRTV 318
           +  +VA N R+RSA +R   R  
Sbjct: 294 SDAEVAANPRARSAVMRVAERIA 316


>gi|294628857|ref|ZP_06707417.1| methylase MraW [Streptomyces sp. e14]
 gi|292832190|gb|EFF90539.1| methylase MraW [Streptomyces sp. e14]
          Length = 318

 Score =  342 bits (879), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 123/310 (39%), Positives = 180/310 (58%), Gaps = 10/310 (3%)

Query: 20  HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           HVPV+L++ + LL P    PG V++D T G GG+S +         +I LDRD  A+   
Sbjct: 6   HVPVMLQRCLDLLAPALERPGAVVVDCTLGLGGHSEALLTRFPEARLIGLDRDKEALRLS 65

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            E +  + ++ +L  A + +L D +   G   V GV+FDLGVSSMQ+D  DRGF++ +  
Sbjct: 66  GERLAPFGDRATLVHAVYDELPDVLDRLGIVRVQGVLFDLGVSSMQLDEADRGFAYAQDA 125

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + GISA++V+N     +L RIL   GEEKQA RI  AIV+ R+  PF  +  
Sbjct: 126 PLDMRMDQTTGISAAEVLNTYPPGELVRILRAYGEEKQAKRIVAAIVREREKEPFAHSAR 185

Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  LI+  +   +K    +PA R+FQALRI VN E+  L + + +A KAL  GG + V+S
Sbjct: 186 LVELIRDALPQAAKRTGGNPAKRTFQALRIEVNGELAVLERAVPAAVKALDVGGRIAVLS 245

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           + SLEDRLVK+ FA+ +         +    +    + +T+   +PT+E++A NRR+  A
Sbjct: 246 YQSLEDRLVKQVFAAGAATTAPPGLPVVPERYQPRLKLLTRGAELPTEEEIAENRRAAPA 305

Query: 310 KLRAGMRTVE 319
           +LR   R   
Sbjct: 306 RLRGVERVRA 315


>gi|304310311|ref|YP_003809909.1| Methyltransferase involved in cell envelope biogenesis [gamma
           proteobacterium HdN1]
 gi|301796044|emb|CBL44248.1| Methyltransferase involved in cell envelope biogenesis [gamma
           proteobacterium HdN1]
          Length = 310

 Score =  342 bits (879), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 124/308 (40%), Positives = 182/308 (59%), Gaps = 12/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H PVLL++VI  L      + +D TFG GG++R+     S    ++  D+DP A++ G +
Sbjct: 6   HRPVLLQEVIENLLTDTAGIYVDGTFGRGGHARALLARLSADARLVGFDKDPEAIAVGLQ 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            +     +FS+   +F+++       G    V GV+ DLGVSS Q+D   RGFSF   GP
Sbjct: 66  -LAAEDARFSIVHGSFAEIGTRPELAGLQGTVSGVLLDLGVSSPQLDDASRGFSFMNDGP 124

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+   G SA+D +N  + K +  +L  LGEE+ A RIA AIV +R+ +P  TT+ L
Sbjct: 125 LDMRMNNDAGESAADWLNHEDAKQIEWVLRELGEERFAGRIARAIVAQREMSPLCTTKQL 184

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + LI K V   + ++ HPATRSFQA+RI+VN E+++L  GL ++ + +K GG + V+SFH
Sbjct: 185 ADLIYKAVPVREKHK-HPATRSFQAVRIWVNRELQDLEVGLAASLELVKVGGRIAVISFH 243

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPA-VFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK+FF          R +  + A      + + KK V P+ ++VA N RSRSA 
Sbjct: 244 SLEDRIVKQFFEKHVKGEQLPRGLPVTGAALGIRLRHVAKK-VRPSDDEVAVNVRSRSAT 302

Query: 311 LRAGMRTV 318
           LR   +  
Sbjct: 303 LRVVEKIA 310


>gi|329907257|ref|ZP_08274578.1| S-adenosyl-methyltransferase MraW [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327547063|gb|EGF31946.1| S-adenosyl-methyltransferase MraW [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 316

 Score =  342 bits (879), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 117/308 (37%), Positives = 172/308 (55%), Gaps = 16/308 (5%)

Query: 20  HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73
           H  VLLE+ +  L         + LD TFG GG+SR        G  +IA D+DP A++ 
Sbjct: 7   HRTVLLEEAVEALALQGARTDGIYLDGTFGRGGHSRRILSALGAGGRLIAFDKDPQAIAS 66

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130
             E       +F +   +F+ L   +  +GV   DGV+ DLG+SS Q+D   RGFSF+  
Sbjct: 67  AGEIA---DPRFDIVHDSFATLDLALSARGVGLVDGVLLDLGISSPQVDDAARGFSFRAD 123

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
           GPLDMRM  + G+SA++ +     +++ +++   GEE+ A +IA AI   R   P  +T+
Sbjct: 124 GPLDMRMDTTRGLSAAEWLATETEQNIEKVIRNYGEERFAFQIAKAIAASRTIEPISSTR 183

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            L+ ++ +TV   +     PATR+FQA+RI++N E+EEL  GL+ A   L   G L+V+S
Sbjct: 184 QLAQIVARTVKT-REKGKDPATRTFQAIRIYINQELEELEIGLQQAYARLAPHGRLVVIS 242

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK+F AS++      R   I +   P     +  K   P+ E+VA N RSRS
Sbjct: 243 FHSLEDRIVKRFMASKAHVEQPDRRLPIRAVDLPQPEMILISKA-KPSTEEVAGNPRSRS 301

Query: 309 AKLRAGMR 316
           A +R   R
Sbjct: 302 AVMRVAQR 309


>gi|312140150|ref|YP_004007486.1| sam dependent methyltransferase mraw [Rhodococcus equi 103S]
 gi|311889489|emb|CBH48806.1| SAM dependent methyltransferase MraW [Rhodococcus equi 103S]
          Length = 390

 Score =  342 bits (878), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 112/320 (35%), Positives = 175/320 (54%), Gaps = 18/320 (5%)

Query: 20  HVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69
           HVPVLL +   LL PA         G V++DAT G GG+S  F +     ++I LDRDP 
Sbjct: 71  HVPVLLNRADDLLGPAITADNPRGDGAVMIDATLGLGGHSEYFLRTYPGLHLIGLDRDPE 130

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD------GVVFDLGVSSMQIDCGDR 123
           A+    + +  Y ++ +     +  + + +   G+D       ++FDLGVSSMQ+D  DR
Sbjct: 131 ALRIASDRLAPYADRTTFVHTRYDGIVEALGQAGLDPVGSVHAILFDLGVSSMQLDEADR 190

Query: 124 GFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GF++    PLDMRM+ + GI+A++V+N  +  +L RIL   GEE+ A RIA  IV+RRQ 
Sbjct: 191 GFAYSIDAPLDMRMNPTTGITAAEVLNTYSHGELARILSTYGEERFAGRIASEIVRRRQK 250

Query: 183 APFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            PF T+  L  L+  T+  + +    HPA R+FQALR+ VN E++ L   + +   AL  
Sbjct: 251 QPFTTSAALVELLYDTIPAATRRTGGHPAKRTFQALRVEVNGELDSLRDAIPAGLDALAV 310

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           GG ++ +S+ SLEDR+VK+  A R+         +        F+ +T+     ++ ++ 
Sbjct: 311 GGRVVFMSYQSLEDRVVKQELAPRAKSKTPEGLPVELPGMGPEFKILTRGAERASEAEIE 370

Query: 302 FNRRSRSAKLRAGMRTVERS 321
            N R+   +LRA  R   ++
Sbjct: 371 DNPRAAPVRLRAAERIARKA 390


>gi|263460310|sp|A4TBF6|RSMH_MYCGI RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 317

 Score =  342 bits (878), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 117/310 (37%), Positives = 172/310 (55%), Gaps = 10/310 (3%)

Query: 18  GDHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVS 72
             HVPVLL++ + LL P     G  ++DAT GAGG+S  F        +I LDRDP A+ 
Sbjct: 5   QPHVPVLLDRCVELLAPALTREGATLVDATLGAGGHSERFLTDFPGLRLIGLDRDPDALR 64

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQK 129
              E +  + ++ +L +  +  + D V D     VD ++FDLGVSSMQ+D  +RGFS+  
Sbjct: 65  IAGERLAPFADRITLVRTRYDGIADAVRDAAGGSVDAILFDLGVSSMQLDRVERGFSYST 124

Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM   + ++A+ V+N  + + L R+L   GEEK A RIA  IV+RR   PF TT
Sbjct: 125 DAPLDMRMDSGADLTAAQVLNSYDERALARVLREYGEEKFAGRIAAFIVRRRAVTPFTTT 184

Query: 189 QDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L  L+   +   ++    HPA R+FQALRI VN E+E L   + +A +AL+  G L V
Sbjct: 185 GELVELLYDAIPAPARRTGGHPAKRTFQALRIEVNAELESLRSAIPAALQALRPHGRLAV 244

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +++ SLEDR+VK  FA+ +         +    H   F ++T+       E++  N RS 
Sbjct: 245 MAYQSLEDRIVKTAFAAATASRTPPGLPVELPGHGPEFVALTRGAERADAEEIERNPRSA 304

Query: 308 SAKLRAGMRT 317
             +LRA  + 
Sbjct: 305 PVRLRAVEKV 314


>gi|254449029|ref|ZP_05062483.1| S-adenosyl-methyltransferase MraW [gamma proteobacterium HTCC5015]
 gi|198261423|gb|EDY85714.1| S-adenosyl-methyltransferase MraW [gamma proteobacterium HTCC5015]
          Length = 309

 Score =  342 bits (878), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 122/306 (39%), Positives = 168/306 (54%), Gaps = 12/306 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
           +HVPVLL + I  L      V LD TFG GG+S +          + A+DRD  AV   Q
Sbjct: 6   EHVPVLLAEAIEGLRIEENGVYLDGTFGRGGHSAAILSQLGVDGQLHAIDRDRAAVDVAQ 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGV----DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +   +   +FS+    FSQL  Y   +G+    +GV+ D+GVSS QID   RGFSFQ  G
Sbjct: 66  QRFAE-DARFSIHHGEFSQLDQYCEQRGLAGRLNGVLLDIGVSSPQIDDPGRGFSFQFDG 124

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + G +A+  +  A   ++ R+L   GEE+ A RIA AI +  Q    +TTQ 
Sbjct: 125 PLDMRMDQTRGETAAQWLVSAEASEIARVLKEFGEERNAKRIASAIKRTLQERSIETTQG 184

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L ++I+      ++   HPATRSFQALRI VN+E+  L + L +A + L  GG L V+SF
Sbjct: 185 LVAVIESATRV-RDRHKHPATRSFQALRIQVNDEMGALRRALDAAVRMLAPGGRLAVISF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDR+VK+F    S      R  +P        +S+  K +   + ++  N R+RSA 
Sbjct: 244 HSLEDRMVKRFIRDESTPREVARG-LPQKTDHIRLKSV-GKAIKAGESELKKNPRARSAV 301

Query: 311 LRAGMR 316
           LR   R
Sbjct: 302 LRVAER 307


>gi|87199147|ref|YP_496404.1| methyltransferase [Novosphingobium aromaticivorans DSM 12444]
 gi|123736248|sp|Q2G9A3|RSMH_NOVAD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|87134828|gb|ABD25570.1| methyltransferase [Novosphingobium aromaticivorans DSM 12444]
          Length = 329

 Score =  342 bits (878), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 142/327 (43%), Positives = 199/327 (60%), Gaps = 17/327 (5%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDP 68
           MS+    +   H+PVLLE+V+A L+P PG +I+DATFGAGGY+R     G+ V A DRDP
Sbjct: 1   MSAETG-SRAPHIPVLLEEVVAALDPKPGDLIVDATFGAGGYTRRLLDAGATVHAFDRDP 59

Query: 69  FAVSCGQETMRDYK--EQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDR 123
            A++ G+          +  L    FS++ + + + G   V GVVFD+GVSSMQ+D   R
Sbjct: 60  DAIAAGKLWGETCGKEPRLVLHPRRFSEIAEGLAEAGIAGVQGVVFDIGVSSMQLDQAAR 119

Query: 124 GFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           GF+F   GPLDMRMS  G SA+D +N+A+  ++  +L   GEE+Q+ RIA AIV  R   
Sbjct: 120 GFAFSSDGPLDMRMSQEGPSAADFLNEADEGEIADVLYRYGEERQSRRIARAIVAAR--- 176

Query: 184 PFQTTQDLSSLIQKTVYFSKNNR-----IHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           P  TT   +++++K + +  + +       PATRSFQA+RI VN E++EL QGL +AEK 
Sbjct: 177 PLTTTAQFAAVVRKALGYRPDIKGPKAPKDPATRSFQAVRIHVNGELDELVQGLAAAEKV 236

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPT 296
           L  GG + VVSFHSLEDR+VK+F    +G V A    +P   +   AVF+  +   + PT
Sbjct: 237 LVPGGRIAVVSFHSLEDRIVKQFLREGAGAVPAGSRHLPQLESKVQAVFEKPS-GAIRPT 295

Query: 297 QEDVAFNRRSRSAKLRAGMRTVERSIE 323
            E+ A N R+RSA LR  +RT   +  
Sbjct: 296 PEEEARNPRARSATLRCAVRTAAPARA 322


>gi|308048060|ref|YP_003911626.1| S-adenosyl-methyltransferase MraW [Ferrimonas balearica DSM 9799]
 gi|307630250|gb|ADN74552.1| S-adenosyl-methyltransferase MraW [Ferrimonas balearica DSM 9799]
          Length = 315

 Score =  342 bits (878), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 120/309 (38%), Positives = 172/309 (55%), Gaps = 13/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H+ VLL++ +  L   P  + +D TFG GG+SR           +I +DRDP AV+  Q+
Sbjct: 7   HITVLLDEAVNGLQLKPDGIYVDGTFGRGGHSRHILSQLGPNGRLIGIDRDPQAVAVAQQ 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              +   +F +    FS + +YV   G    +DGV+ DLGVSS Q+D  +RGFSF + GP
Sbjct: 67  LAAE-DPRFQIVHGPFSGIAEYVEALGLTGQIDGVLLDLGVSSPQLDDAERGFSFLRDGP 125

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTTQD 190
           LDMRM  S G +A++ + +A   D+  +L   GEEK A  IA  IV+      P   T  
Sbjct: 126 LDMRMDNSRGETAAEWLARAEANDIAWVLKTFGEEKFARPIARKIVEHIAAGEPMDRTSH 185

Query: 191 LSSLIQKTVYFSKNN-RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ LI+K     K +   HPATRSFQA+RI++N+E+EE+ + L  A +ALK GG L V+S
Sbjct: 186 LAGLIEKMTPKHKRDQGKHPATRSFQAIRIYINSELEEIEKALMGALEALKPGGRLSVIS 245

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI--TKKVVVPTQEDVAFNRRSR 307
           FHSLEDRLVK+F    S        +  +       + +    K + P+  +V  N R+R
Sbjct: 246 FHSLEDRLVKRFMRRESQGEPVPHGLPLTEEQMKQTRRLKTVGKALKPSDTEVEDNTRAR 305

Query: 308 SAKLRAGMR 316
           S+ LR G +
Sbjct: 306 SSVLRVGEK 314


>gi|116688575|ref|YP_834198.1| S-adenosyl-methyltransferase MraW [Burkholderia cenocepacia HI2424]
 gi|170731875|ref|YP_001763822.1| S-adenosyl-methyltransferase MraW [Burkholderia cenocepacia MC0-3]
 gi|263446896|sp|B1JUW4|RSMH_BURCC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446902|sp|A0K478|RSMH_BURCH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|116646664|gb|ABK07305.1| S-adenosyl-methyltransferase MraW [Burkholderia cenocepacia HI2424]
 gi|169815117|gb|ACA89700.1| S-adenosyl-methyltransferase MraW [Burkholderia cenocepacia MC0-3]
          Length = 313

 Score =  342 bits (878), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 115/311 (36%), Positives = 175/311 (56%), Gaps = 19/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  V +D TFG GG+SR+          +IA D+DP A+   Q 
Sbjct: 7   HRTVLLDEAVESLVTRPDGVYVDGTFGRGGHSRAVLARLASAGRLIAFDKDPRAIETAQ- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +FS+   +F+ ++D +  +GV    GV+ DLGVSS Q+D   RGFSF+  GPL
Sbjct: 66  --GIEDARFSIVHDSFASMRDALAARGVEKVSGVLLDLGVSSPQVDDPARGFSFRADGPL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS----APFQTT 188
           DMRM  + G SA++ + +A+V++LT ++   GEE+ A +IA A+V RR       P  TT
Sbjct: 124 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDTT 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ ++   V   +     PATR+FQA+RI VN E+ +L   L +A   L+ GG L+V+
Sbjct: 184 GELAQIVGHVVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVI 242

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           SFHSLEDR+VK+F  + +      R +     +      + I++    P++ +VA N R+
Sbjct: 243 SFHSLEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPPLKIISR--QFPSEAEVAANPRA 300

Query: 307 RSAKLRAGMRT 317
           RSA +R   R 
Sbjct: 301 RSAVMRIAERV 311


>gi|330815435|ref|YP_004359140.1| S-adenosyl-methyltransferase MraW [Burkholderia gladioli BSR3]
 gi|327367828|gb|AEA59184.1| S-adenosyl-methyltransferase MraW [Burkholderia gladioli BSR3]
          Length = 313

 Score =  342 bits (878), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 116/312 (37%), Positives = 176/312 (56%), Gaps = 19/312 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  + +D TFG GG+SR        G  +IA D+DP A+     
Sbjct: 7   HRTVLLDEAVDALVTRPDGIYVDGTFGRGGHSRLVLDRLAEGGRLIAFDKDPLAIETAS- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             R    +FS+   +F+ L   + ++GV    GV+ DLGVSS QID  +RGFSF+ +GPL
Sbjct: 66  --RVGDTRFSIVHDSFASLGGALAERGVGRVTGVLLDLGVSSPQIDDPERGFSFRANGPL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS----APFQTT 188
           DMRM  + G SA+D + +A++++LT ++   GEE+ A +IA A+V RR       P  +T
Sbjct: 124 DMRMDTTRGESAADWLARASLQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDST 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ ++   V   +     PATR+FQA+RI VN E+ +L   L SA  +L+ GG L+V+
Sbjct: 184 GELAQIVGHAVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLESALSSLEQGGRLVVI 242

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           SFHSLEDR+VK+F  + +      R +     +      + + +K   P + +VA N R+
Sbjct: 243 SFHSLEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPPLKLLGRK--FPGEAEVAANPRA 300

Query: 307 RSAKLRAGMRTV 318
           RSA +R   R  
Sbjct: 301 RSAVMRIAERVA 312


>gi|297620593|ref|YP_003708730.1| S-adenosyl-methyltransferase [Waddlia chondrophila WSU 86-1044]
 gi|297375894|gb|ADI37724.1| S-adenosyl-methyltransferase [Waddlia chondrophila WSU 86-1044]
          Length = 306

 Score =  342 bits (878), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 109/306 (35%), Positives = 166/306 (54%), Gaps = 11/306 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCGQ 75
            H+ VLLE+V    +    K  +D T GAGG+S         +   + +D+DP A+   +
Sbjct: 3   PHLSVLLEEVAESFSDVDLKRFVDGTLGAGGHSAEILSAHPEIQRFLGIDQDPDALEIAR 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E +  + E+    +  FS L++++   G   VDG++ DLGVSSMQ D  +RGFS Q+ GP
Sbjct: 63  ERLSKWSEKVMFQRGNFSDLKEHLAQNGLEKVDGILLDLGVSSMQFDRPERGFSLQQDGP 122

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+    ++A+++VN     +L  +    GEEK+    A A+     + P   T +L
Sbjct: 123 LDMRMNPEEPLTAAEIVNTWPEAELGDLFKKYGEEKRWRAAARAVA---AARPISRTLEL 179

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             ++   +   +  +IHPAT  FQALR+ VN EIE + + +  A   L  GG L V+SFH
Sbjct: 180 VEVLTSVLGRPRKGKIHPATLIFQALRLAVNREIERIEEVIPQAIGCLNPGGRLAVISFH 239

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPS-NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK+ F   +    + R +     +   V   IT+K +VP + +V  N RSRS+K
Sbjct: 240 SLEDRIVKRQFRYLADDKESTRGVGGVFISKEPVVNLITRKPIVPGKAEVERNPRSRSSK 299

Query: 311 LRAGMR 316
           LR   +
Sbjct: 300 LRVVEK 305


>gi|239940578|ref|ZP_04692515.1| putative S-adenosylmethionine-dependent methyltransferase
           [Streptomyces roseosporus NRRL 15998]
 gi|239987061|ref|ZP_04707725.1| putative S-adenosylmethionine-dependent methyltransferase
           [Streptomyces roseosporus NRRL 11379]
 gi|291444013|ref|ZP_06583403.1| S-adenosylmethionine-dependent methyltransferase [Streptomyces
           roseosporus NRRL 15998]
 gi|291346960|gb|EFE73864.1| S-adenosylmethionine-dependent methyltransferase [Streptomyces
           roseosporus NRRL 15998]
          Length = 313

 Score =  342 bits (878), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 120/312 (38%), Positives = 177/312 (56%), Gaps = 13/312 (4%)

Query: 24  LLEKVIALLNPA------PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQ 75
           +L++ + LL PA      P  V++D T G GG+S +         +IALDRD  A+    
Sbjct: 2   MLQRCLDLLAPALQDPAHPDPVVVDCTLGLGGHSEALLAAFPTARLIALDRDKEALRLSG 61

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E +  Y ++ +L  A + +L + +   G   V GV+FDLGVSSMQ+D  DRGF++ +  P
Sbjct: 62  ERLAPYGDRATLVHAVYDELPEVLERLGIPKVQGVLFDLGVSSMQLDEADRGFAYAQDAP 121

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S G+ A++V+N     +L RIL   GEEKQA RI  AIV+ R+  PF  +  L
Sbjct: 122 LDMRMDQSTGMGAAEVLNTYPPGELVRILRAYGEEKQAKRIVSAIVREREKEPFSNSARL 181

Query: 192 SSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             LI+  +   +K    +PA R+FQALRI VN E+  L + + +A  +L  GG + V+S+
Sbjct: 182 VELIRDALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVDSLAVGGRIAVLSY 241

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDRLVK+ FA+ +         +    +    + +T+   +PT+E+VA NRR+  A+
Sbjct: 242 HSLEDRLVKQVFAAGAANTAPPGLPVVPERYQPRLKQLTRGAELPTEEEVAENRRAAPAR 301

Query: 311 LRAGMRTVERSI 322
           LR   R  E   
Sbjct: 302 LRGAQRIREEER 313


>gi|190571322|ref|YP_001975680.1| S-adenosyl-methyltransferase MraW [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213018718|ref|ZP_03334526.1| S-adenosyl-methyltransferase MraW [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|226709924|sp|B3CMB5|RSMH_WOLPP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|190357594|emb|CAQ55035.1| S-adenosyl-methyltransferase MraW [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212995669|gb|EEB56309.1| S-adenosyl-methyltransferase MraW [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 294

 Score =  342 bits (878), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 119/302 (39%), Positives = 181/302 (59%), Gaps = 17/302 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQETM 78
           H+PVLL++++  L+P  G + +DATFGAGGYS++  +     V A+DRD        +  
Sbjct: 3   HIPVLLKEMLLQLSPHSGGIYVDATFGAGGYSKAILESADCKVYAVDRDETVTKFYDDLN 62

Query: 79  RDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
             Y  +  LF   FS +++ +      G++G+VFD+GVSSMQ+D GDRGFSF + GPL+M
Sbjct: 63  VKYPNRIKLFIEKFSNIKNLLDSNNIKGINGIVFDVGVSSMQLDNGDRGFSFLRDGPLNM 122

Query: 136 RMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
            M   S ++AS  VN    +++   +   G E+ + RIA AIV  R+    +TT +L+ +
Sbjct: 123 SMDNYSHMNASTFVNALREEEIANTIYNYGGERHSRRIARAIVNARKKKIIKTTFELADI 182

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           ++  V+  K ++I PATR+FQA+RI+VN+E+ EL +G+++A + L   G LIVV+FHSLE
Sbjct: 183 VRSVVFRGK-SKIDPATRTFQAIRIWVNDELGELEKGIKAASEILSENGKLIVVTFHSLE 241

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           DR+VK  F             +        F  + KKV+  + E++  N R+RSAKLRA 
Sbjct: 242 DRIVKTVFKD-----------LCEPGSTKTFSLLNKKVIKASSEEINVNPRARSAKLRAI 290

Query: 315 MR 316
            R
Sbjct: 291 QR 292


>gi|163752984|ref|ZP_02160108.1| S-adenosylmethionine methyltransferase [Kordia algicida OT-1]
 gi|161326716|gb|EDP98041.1| S-adenosylmethionine methyltransferase [Kordia algicida OT-1]
          Length = 298

 Score =  342 bits (878), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 106/304 (34%), Positives = 164/304 (53%), Gaps = 17/304 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H PVLL++ +  LN     V +D TFG GG+S+           + A D+D  A+    +
Sbjct: 4   HNPVLLKETVDGLNIKEDGVYVDVTFGGGGHSKEILNRLGENGKLYAFDQDQDALENTID 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +F+L    F  L+ ++   G   VDG++ D GVSS Q D  +RGFS +    L
Sbjct: 64  -----DSRFTLIHQNFRHLKKFLRFYGIKKVDGILGDFGVSSHQFDVAERGFSLRFEADL 118

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM   G ISA  VVN+ + +DL  IL + GE + A  IA  IV  R   P +TT++L 
Sbjct: 119 DMRMDQEGEISAYHVVNEYSEEDLRSILSLYGEVRNAKGIAAQIVSARSEEPIKTTEELR 178

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
             +Q+ +   + +++    + +QA+RI VN EIE L + L   ++ L+ GG L ++S+HS
Sbjct: 179 VALQRFLPKHREHKV--LAQIYQAIRIEVNQEIEVLKEFLLQTQELLEKGGRLSLISYHS 236

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDRLVK++  +   +    +        P  F+ +  K+++P+ E++  N R+RSAKLR
Sbjct: 237 LEDRLVKRYIRNGLFEGEPEKDFYGRVEVP--FKKV-GKLIIPSNEEIKTNNRARSAKLR 293

Query: 313 AGMR 316
              R
Sbjct: 294 IAER 297


>gi|299139518|ref|ZP_07032692.1| S-adenosyl-methyltransferase MraW [Acidobacterium sp. MP5ACTX8]
 gi|298598446|gb|EFI54610.1| S-adenosyl-methyltransferase MraW [Acidobacterium sp. MP5ACTX8]
          Length = 324

 Score =  342 bits (877), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 127/310 (40%), Positives = 177/310 (57%), Gaps = 28/310 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           HVPVLLE+ +  L   PG V +DAT G GG+S +  +       +I  DRDP A++  Q 
Sbjct: 20  HVPVLLEESLKYLKVRPGGVYVDATLGLGGHSAAIARQLGGAGKLICFDRDPEAMAKAQA 79

Query: 77  TMRDYKE-------QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
            +    E       Q       FS++ + V    +DG++ D GVSS+Q+D   RGFSF+ 
Sbjct: 80  RLAAVAEELGPEMPQVRYVPRAFSEIDEEVEPNSLDGLLADFGVSSLQLDEAHRGFSFRT 139

Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM   S ++A  VVNQA+ +DL  ++   GEE+++ RIA AIV+ R   P +TT
Sbjct: 140 DGPLDMRMDSRSELTAQQVVNQADEEDLANLIYEFGEERRSRRIARAIVRAR---PIETT 196

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ +I       K ++IHPATR+FQALRI VN+EI ++   L SAE  LK GG ++++
Sbjct: 197 AELARVISAVTPSMKGDKIHPATRTFQALRIRVNDEIGQIQSLLHSAESLLKPGGRVVLI 256

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDR VK  F                 A     + +TKK VV  +++   N RSRS
Sbjct: 257 SFHSLEDRPVKDAFRE--------------GAKAGRLEILTKKPVVAGEQESLRNPRSRS 302

Query: 309 AKLRAGMRTV 318
           AKLRA  + +
Sbjct: 303 AKLRAAEKVL 312


>gi|169831601|ref|YP_001717583.1| S-adenosyl-methyltransferase MraW [Candidatus Desulforudis
           audaxviator MP104C]
 gi|263446209|sp|B1I4D9|RSMH_DESAP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|169638445|gb|ACA59951.1| S-adenosyl-methyltransferase MraW [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 324

 Score =  342 bits (877), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 110/310 (35%), Positives = 168/310 (54%), Gaps = 9/310 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVS 72
           T   H PV+L +V+  L+P PG   +D T G GG++    +       ++ +DRD  A++
Sbjct: 4   TGFRHQPVMLREVLEWLDPKPGGTYVDCTLGGGGHALGVLERIGGRGLLVGIDRDADALA 63

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
                +  Y +   L QA F +L   +       V G+++DLGVSS Q+D   RGF +Q+
Sbjct: 64  AAAFRLAGYGDGVRLVQADFRELAAVLRRLETGPVQGILYDLGVSSHQLDTASRGFGYQQ 123

Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM   G ++A+D+VN+    +L+ ++   GEE+ + RIA  I + R+  P  TT
Sbjct: 124 DAPLDMRMDPGGGVTAADLVNRLPEDELSDLIKAYGEERWSRRIAAFIARERKREPILTT 183

Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
             L+ +I++ V    +    HPA R+FQALRI VN+E+  L   L  A   L AGG ++V
Sbjct: 184 GRLAEVIKEAVPARARRTGPHPARRTFQALRIAVNDELGALKTSLHQAVDLLDAGGRVVV 243

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           +S+HSLEDRLVK  F   +        +             +T +  VP ++++A N R+
Sbjct: 244 LSYHSLEDRLVKDTFREFAVHCKCPPGLPECRCGVVPRLDILTSRPRVPGEDEIAANPRA 303

Query: 307 RSAKLRAGMR 316
           RSAKLRA  +
Sbjct: 304 RSAKLRAARK 313


>gi|296160551|ref|ZP_06843367.1| S-adenosyl-methyltransferase MraW [Burkholderia sp. Ch1-1]
 gi|295889300|gb|EFG69102.1| S-adenosyl-methyltransferase MraW [Burkholderia sp. Ch1-1]
          Length = 313

 Score =  342 bits (877), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 114/312 (36%), Positives = 173/312 (55%), Gaps = 19/312 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H  VLLE+ +  L      V +D TFG GG+SR   +       +IA D+DP A++  Q+
Sbjct: 7   HRTVLLEEAVQALVTRADGVYVDGTFGRGGHSRLVLEKLGESGRLIAFDKDPLAIATAQQ 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +F +   +F+ L+  + ++GV    GV+ DLGVSS Q+D  +RGFSF+  GPL
Sbjct: 67  I---TDPRFGIVHESFASLRTAMAERGVGRVSGVLLDLGVSSPQVDDPERGFSFRADGPL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS----APFQTT 188
           DMRM  + G SA+D + +A V++LT ++   GEE+ A +IA A+V RR       P  +T
Sbjct: 124 DMRMDPTRGESAADWLARATVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLVST 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ ++   V   +     PATR+FQA+RI +N E+ EL   L +A   L+ GG L+V+
Sbjct: 184 GELAQIVANVVKT-REKGKDPATRTFQAIRIHINQELAELQVVLEAALSLLEQGGRLVVI 242

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           SFHSLEDR+VK+F  + +      R +     +      + I +  V  +  +VA N R+
Sbjct: 243 SFHSLEDRIVKRFMQAHASTPAVDRRLPIRAVDLPSPPLKIIGR--VFASDAEVAANPRA 300

Query: 307 RSAKLRAGMRTV 318
           RSA +R   R  
Sbjct: 301 RSAVMRVAERIA 312


>gi|307151535|ref|YP_003886919.1| S-adenosyl-methyltransferase MraW [Cyanothece sp. PCC 7822]
 gi|306981763|gb|ADN13644.1| S-adenosyl-methyltransferase MraW [Cyanothece sp. PCC 7822]
          Length = 299

 Score =  342 bits (877), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 126/318 (39%), Positives = 185/318 (58%), Gaps = 28/318 (8%)

Query: 4   KSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI- 62
                MS+A   T  +HVPVL  ++I+ LN  PG   LDAT GAGG++R   +  +NV  
Sbjct: 2   TKVTQMSTADFST-FNHVPVLTRELISGLNICPGGHYLDATVGAGGHTRKLLESYANVRV 60

Query: 63  -ALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDC 120
            A+DRD  A++     + +Y  ++ + +Q  F+  +    ++  DG++ DLGVSS Q+D 
Sbjct: 61  TAIDRDSTAIAAAAANLAEYNIDRLTFWQGNFANYE--AKEETFDGIIADLGVSSPQLDH 118

Query: 121 GDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFSF+   PLDMRM C   ++A+ V+N  +  +LT+I    GEE+ + +IA  IVK+
Sbjct: 119 PERGFSFRLEAPLDMRMDCGQSLTAATVINTWDETELTKIFYNYGEERLSRQIAKQIVKQ 178

Query: 180 RQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R   PF +T +L+++I ++V    +  RIHPATR FQALRI VN E+E L   L  +   
Sbjct: 179 R---PFYSTTELANVIARSVPPKYRYGRIHPATRVFQALRIAVNQELESLLSFLIKSPYW 235

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           LK  G++ V+SFHSLEDR+VK  F S                   + + +TKK ++P  +
Sbjct: 236 LKRDGIIGVISFHSLEDRIVKHQFRSS-----------------PLLKVLTKKPIIPQSD 278

Query: 299 DVAFNRRSRSAKLRAGMR 316
           + A N RSRSAKLR   R
Sbjct: 279 EQAKNPRSRSAKLRLAQR 296


>gi|257061938|ref|YP_003139826.1| S-adenosyl-methyltransferase MraW [Cyanothece sp. PCC 8802]
 gi|256592104|gb|ACV02991.1| S-adenosyl-methyltransferase MraW [Cyanothece sp. PCC 8802]
          Length = 304

 Score =  342 bits (877), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 113/304 (37%), Positives = 167/304 (54%), Gaps = 27/304 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCGQET 77
           H+ VL +++IA LN  PG   LDAT G+GG+SR       +V   A+DRD  A++     
Sbjct: 22  HISVLSQEMIAGLNIIPGGHYLDATVGSGGHSRLILATFPDVRITAIDRDSQAIAAAASN 81

Query: 78  MRDYK-EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
           + +   ++   +Q  F+     + +    G++ DLGVSS Q D  +RGFSF+  G LDMR
Sbjct: 82  LAELGSDRLKFWQGNFADYPGKIAE--FSGIIADLGVSSPQFDFPERGFSFRHEGALDMR 139

Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M  +  ++A +++NQ +   L  +    GEE+++  +A  IV++R   PF+TT  L+  I
Sbjct: 140 MDQTQSLTAGEIINQWSETALADLFYQYGEERRSRSMAKHIVQQR---PFKTTTQLAEAI 196

Query: 196 QKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
            +TV    +  RIHPATR FQALRI VN E+  L + L  A + L+ GG + ++SFHSLE
Sbjct: 197 AQTVPPKYRYGRIHPATRVFQALRIAVNEELSSLERFLDRAPQWLQPGGRIGIISFHSLE 256

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           DR+VK  F                         +TKK ++P +E+   N RSRSAKLR  
Sbjct: 257 DRIVKYRFRDS-----------------CWLTVMTKKPIIPQREEQLKNPRSRSAKLRLA 299

Query: 315 MRTV 318
            R +
Sbjct: 300 ERNL 303


>gi|83720235|ref|YP_441658.1| S-adenosyl-methyltransferase MraW [Burkholderia thailandensis E264]
 gi|167580465|ref|ZP_02373339.1| S-adenosyl-methyltransferase MraW [Burkholderia thailandensis
           TXDOH]
 gi|167618573|ref|ZP_02387204.1| S-adenosyl-methyltransferase MraW [Burkholderia thailandensis Bt4]
 gi|257137827|ref|ZP_05586089.1| S-adenosyl-methyltransferase MraW [Burkholderia thailandensis E264]
 gi|123537607|sp|Q2SZJ1|RSMH_BURTA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|83654060|gb|ABC38123.1| S-adenosyl-methyltransferase MraW [Burkholderia thailandensis E264]
          Length = 313

 Score =  342 bits (877), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 111/312 (35%), Positives = 173/312 (55%), Gaps = 19/312 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  V +D TFG GG+SR+          +IA D+DP A+     
Sbjct: 7   HRTVLLDEAVDALVTRPDGVYVDGTFGRGGHSRAVLARLSDAGRLIAFDKDPRAIETAS- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +F +   +F+ ++  +  +GV    GV+ DLGVSS Q+D  +RGFSF+ +GPL
Sbjct: 66  --GIEDARFEIVHDSFAAMKGALDARGVGRVSGVLLDLGVSSPQVDDPERGFSFRANGPL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS----APFQTT 188
           DMRM  + G SA++ + +A+V++LT ++   GEE+ A +IA AIV RR       P  +T
Sbjct: 124 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRLGPLDST 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ ++   V   +     PATR+FQA+RI VN E+ +L   L +A   L+ GG L+V+
Sbjct: 184 GELAQIVGHVVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLEAALSLLEQGGRLVVI 242

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           SFHSLEDR+VK+F  + +      R +     +      + + +  + P+  +VA N R+
Sbjct: 243 SFHSLEDRIVKRFLQTHASAPAVDRRLPIRAVDLPSPPLKLLGR--MFPSDAEVAANPRA 300

Query: 307 RSAKLRAGMRTV 318
           RSA +R   R  
Sbjct: 301 RSAVMRIAERVA 312


>gi|145595735|ref|YP_001160032.1| S-adenosyl-methyltransferase MraW [Salinispora tropica CNB-440]
 gi|262826474|sp|A4X9S3|RSMH_SALTO RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|145305072|gb|ABP55654.1| S-adenosyl-methyltransferase MraW [Salinispora tropica CNB-440]
          Length = 371

 Score =  342 bits (877), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 118/313 (37%), Positives = 180/313 (57%), Gaps = 14/313 (4%)

Query: 18  GDHVPVLLEKVIALLNPAPGK-------VILDATFGAGGYSRSFCKMGSN--VIALDRDP 68
           G HVPVLLE+ + LL+PA  +       V +DAT G GG++ +         ++ LDRD 
Sbjct: 6   GAHVPVLLERCLELLSPALDRTGQTGRTVYVDATLGLGGHAEAILTAHPRTMLVGLDRDT 65

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGF 125
            A++  +  +  + ++  L  A + +L D +   G   VDG++FDLGVSS+Q+D  DRGF
Sbjct: 66  EALAHARVRLARFADRVHLEHAVYDELPDVLDRIGHPVVDGILFDLGVSSLQLDAPDRGF 125

Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           ++ +  PLDMRM  S G++A +VVN  +  +L R+L + GEEK ASRIA AIV+ R  AP
Sbjct: 126 AYAQDAPLDMRMDQSRGVTAEEVVNSYSHPELARVLRVYGEEKFASRIASAIVRERDRAP 185

Query: 185 FQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
             ++  L+ L+++ +   ++    HPA R+FQALRI VN E+  L   L +A   L   G
Sbjct: 186 ITSSAQLAELVRQAIPAPARRTGGHPAKRTFQALRIEVNRELAALETALPAALDRLAIEG 245

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            ++V+S+HSLEDRL K   A R      +   +        F+ +++   +P + +VA N
Sbjct: 246 RMVVLSYHSLEDRLTKVALADRVRSKGPIDLPVELPGTGPTFRLLSRGAELPGEAEVAVN 305

Query: 304 RRSRSAKLRAGMR 316
            R+ S +LRA  R
Sbjct: 306 PRAASVRLRAAER 318


>gi|254423474|ref|ZP_05037192.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. PCC 7335]
 gi|196190963|gb|EDX85927.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. PCC 7335]
          Length = 293

 Score =  342 bits (877), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 117/312 (37%), Positives = 168/312 (53%), Gaps = 26/312 (8%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDR 66
           M   +      HVPVL E+V+A L    G   LDAT G GG+S    K   N  ++ALD+
Sbjct: 1   MPEDVTAQPFFHVPVLSEQVLAGLQIEDGGRYLDATVGGGGHSELILKAARNVELVALDQ 60

Query: 67  DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126
           D  A+S  ++ +  ++++ +     FS+ +     +  DG++ D+GVSS Q+D   RGFS
Sbjct: 61  DLQALSAAKKRLEVWRDRTTFIHTNFSRYEP--GGRKFDGILADIGVSSTQLDQAQRGFS 118

Query: 127 FQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           F++  PLDMRM     + A ++VN  + K +   +   GEE+ + RIA  IV++R   PF
Sbjct: 119 FRQEAPLDMRMDSTQELMAKEIVNHWDEKAIADTIYEYGEERLSRRIARRIVEKR---PF 175

Query: 186 QTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
            TT +L+  +        ++ RIHPATR+FQALRI VN E++ L   L  A   L  GG 
Sbjct: 176 STTTELAWEVAGAYPAKARHGRIHPATRTFQALRIAVNGELDVLKTLLAKAPDWLNPGGR 235

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           L ++SFHSLEDR+VK  +                       + ITKK +V T ++V  N 
Sbjct: 236 LAIISFHSLEDRIVKYAYRGDE-----------------RLEIITKKPLVATDQEVKENA 278

Query: 305 RSRSAKLRAGMR 316
           RSRSAKLR   R
Sbjct: 279 RSRSAKLRIAER 290


>gi|238898853|ref|YP_002924535.1| S-adenosyl-dependent methyl transferase [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
 gi|263456095|sp|C4K744|RSMH_HAMD5 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|229466613|gb|ACQ68387.1| S-adenosyl-dependent methyl transferase [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
          Length = 311

 Score =  342 bits (877), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 124/313 (39%), Positives = 183/313 (58%), Gaps = 19/313 (6%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCG 74
             H  VLL + +  LN     + +DATFG GG+S            +I++DRDP AV   
Sbjct: 4   NQHKTVLLYEAVDSLNIQNDGIYIDATFGRGGHSSLILSRLGSQGKLISIDRDPEAVKKA 63

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            + M+D   +FS  Q +FS L  YV        ++G++FDLGVSS Q+D   RGFSF + 
Sbjct: 64  -KLMKD--PRFSFIQGSFSDLYHYVKKLDLMGRINGLLFDLGVSSPQLDDAKRGFSFMRD 120

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
           GPLDMRM  S G+SA++ + + NV++L  +L   GEE+ ++R+A AIV+R +  P ++T+
Sbjct: 121 GPLDMRMDPSRGLSAAEWLMKVNVENLAWVLKNFGEERFSTRLARAIVERNRLNPIKSTK 180

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           +L+ LI   +   +N+  HPATRSFQA+RI++NNE++E++  L +A + L  G  L VVS
Sbjct: 181 ELADLISHVIPV-RNHHKHPATRSFQAIRIYINNELQEISSALNAALEILSLGARLSVVS 239

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNR 304
           FHSLEDR+VK F    S     +R +  +            + I K   +P+Q++V  N 
Sbjct: 240 FHSLEDRIVKNFIRQHSRGPQILRGLPLTEIQIQSMWQPKLKLIGK--TMPSQKEVLDNP 297

Query: 305 RSRSAKLRAGMRT 317
           RSRS+ LR   R 
Sbjct: 298 RSRSSILRFAERI 310


>gi|295677772|ref|YP_003606296.1| S-adenosyl-methyltransferase MraW [Burkholderia sp. CCGE1002]
 gi|295437615|gb|ADG16785.1| S-adenosyl-methyltransferase MraW [Burkholderia sp. CCGE1002]
          Length = 313

 Score =  342 bits (877), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 113/312 (36%), Positives = 172/312 (55%), Gaps = 19/312 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H  VLL + +  L        +D TFG GG+SR   +       +IA D+DP A++  Q+
Sbjct: 7   HRTVLLNEAVDALVTRADGTYVDGTFGRGGHSRLVLERLGEAGRLIAFDKDPLAIATAQK 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +F++   +F+ L+  + ++GV    GV+ DLGVSS Q+D  +RGFSF+  GPL
Sbjct: 67  IA---DPRFAIVHESFASLRAAMAERGVGRVSGVLLDLGVSSPQVDDPERGFSFRADGPL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS----APFQTT 188
           DMRM  + G SA+D + +A V++LT ++   GEE+ A +IA A+V RR       P  +T
Sbjct: 124 DMRMDPTRGESAADWLARATVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLVST 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ ++   V   +     PATR+FQA+RI VN E+ EL   L +A   L+ GG L+V+
Sbjct: 184 GELAQIVANVVKT-REKGKDPATRTFQAIRIHVNQELAELQVVLEAALSLLEQGGRLVVI 242

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           SFHSLEDR+VK+F  + +      R +     +      + I +  V  +  +VA N R+
Sbjct: 243 SFHSLEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPPLKIIGR--VFASDAEVADNPRA 300

Query: 307 RSAKLRAGMRTV 318
           RSA +R   R  
Sbjct: 301 RSAVMRVAERIA 312


>gi|186477429|ref|YP_001858899.1| S-adenosyl-methyltransferase MraW [Burkholderia phymatum STM815]
 gi|263446931|sp|B2JHG8|RSMH_BURP8 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|184193888|gb|ACC71853.1| S-adenosyl-methyltransferase MraW [Burkholderia phymatum STM815]
          Length = 317

 Score =  342 bits (877), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 115/323 (35%), Positives = 179/323 (55%), Gaps = 20/323 (6%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           M+ A+ + +  H  VLLE+ +  L      + +D TFG GG+SR+          +IA D
Sbjct: 1   MAPAMGNELQ-HRTVLLEEAVNALVTRVDGIYIDGTFGRGGHSRAVLAKLGEAGRLIAFD 59

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGD 122
           +DP A++  Q+       +F +   +F+ L+D + ++ V    GV+ DLGVSS Q D  +
Sbjct: 60  KDPLAIATAQQVA---DPRFEIVHESFASLRDAMSERAVGRVSGVLLDLGVSSPQFDDPE 116

Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF+  GPLDMRM  + G SA+D + +A V+++T ++   GEE+ A +IA A+V RR 
Sbjct: 117 RGFSFRADGPLDMRMDPTRGESAADWLARATVQEMTEVIRDYGEERFAFQIAKALVARRA 176

Query: 182 S----APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
                 P  +T +L+ ++   V   +     PATR+FQA+RI +N E+ EL   L +A  
Sbjct: 177 ESDRLGPLVSTGELAQIVANVVKT-REKGKDPATRTFQAIRIHINQELAELQVVLEAALS 235

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVP 295
            L+ GG L+V+SFHSLEDR+VK+F  + S      R +     +      + + +  V  
Sbjct: 236 LLEQGGRLVVISFHSLEDRIVKRFMQTHSSAPAVDRRLPIRAVDLPSPPLKLLGR--VFA 293

Query: 296 TQEDVAFNRRSRSAKLRAGMRTV 318
           + E+VA N R+RSA +R   R  
Sbjct: 294 SDEEVAANPRARSAVMRVAERIA 316


>gi|315186407|gb|EFU20167.1| S-adenosyl-methyltransferase MraW [Spirochaeta thermophila DSM
           6578]
          Length = 324

 Score =  342 bits (877), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 114/318 (35%), Positives = 173/318 (54%), Gaps = 7/318 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQET 77
           HVPVL E+V A L+     +++DAT G GG+S +  +      ++ +D DP  +S   E 
Sbjct: 8   HVPVLREEVGAFLSVR-DGLVVDATLGEGGHSEALLESHPGIRLLGVDADPIMLSRAGER 66

Query: 78  MRDYKEQFSLFQATFSQ-LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
           +  + ++  L Q  F + L+ +  +    G++ DLG+SS  ++   RGFSF +  PLDMR
Sbjct: 67  LSRFGDRVRLVQGWFDEVLESFPAEDRPVGILMDLGISSYHLEKSGRGFSFLRREPLDMR 126

Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           +S    + ASDVVN  +  +L  +    GEE  + RIA AIV  R+  P  T+  L+ ++
Sbjct: 127 LSPYLPMKASDVVNTYSETELVDVFSRFGEEPFSRRIARAIVSERRKMPITTSDHLAEVV 186

Query: 196 QKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
            K V    +  RIHPATR FQALRI VN E+E + + +R+  + L  GG + V+SFHSLE
Sbjct: 187 MKAVPPKARRGRIHPATRVFQALRIVVNKELERVERAVRAGVRLLAPGGRMAVISFHSLE 246

Query: 255 DRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           DR+VK+ F   +          I       + + +TKK V P +E+V  N  SRSA+LR 
Sbjct: 247 DRIVKRLFRFYASACTCPPEEPICRCGGQGIVEVLTKKPVRPGEEEVRTNPASRSARLRV 306

Query: 314 GMRTVERSIEDDSFVHLP 331
             +  + +   +    LP
Sbjct: 307 LEKVRDAAHLREEGHALP 324


>gi|297161278|gb|ADI10990.1| S-adenosyl-methyltransferase MraW [Streptomyces bingchenggensis
           BCW-1]
          Length = 320

 Score =  342 bits (877), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 116/311 (37%), Positives = 178/311 (57%), Gaps = 10/311 (3%)

Query: 20  HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           HVPV+L++ + +L P    PG V++D T G GG+S +  +      ++ALDRDP A+   
Sbjct: 7   HVPVMLQRCLDMLAPALERPGAVVVDCTLGLGGHSEALLRTFPEARLVALDRDPAALELS 66

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
              +  Y ++ +L  A + +L + +   G   V G++FDLGVSSMQ+D  +RGF++ +  
Sbjct: 67  GARLAPYGDRATLVHAVYDELPEVLARLGIPRVQGILFDLGVSSMQLDEAERGFAYAQDA 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + GISA++V+N     +L RIL   GEEK A +I  A+V+ R   PF  +  
Sbjct: 127 PLDMRMDQTTGISAAEVLNTYPPGELVRILRTYGEEKFARKIVDAVVRERAKEPFHNSAR 186

Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  LI+  +   +K    +PA R+FQALRI VN E+  L + + +A  AL  GG + V+S
Sbjct: 187 LVELIRAALPQAAKRTGGNPAKRTFQALRIEVNGELTVLERAIPAAVAALAVGGRIAVLS 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           +HSLEDRLVK    + +         +    +    + +T+   +PT+E++A NRR+  A
Sbjct: 247 YHSLEDRLVKHVLGAGAETTAPPGLPVVPERYQPRLKLLTRGAELPTEEEIAENRRAAPA 306

Query: 310 KLRAGMRTVER 320
           +LR   R  E 
Sbjct: 307 RLRGAERIREE 317


>gi|303232694|ref|ZP_07319379.1| S-adenosyl-methyltransferase MraW [Atopobium vaginae PB189-T1-4]
 gi|302481180|gb|EFL44255.1| S-adenosyl-methyltransferase MraW [Atopobium vaginae PB189-T1-4]
          Length = 316

 Score =  342 bits (877), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 116/317 (36%), Positives = 176/317 (55%), Gaps = 28/317 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCG----- 74
           H+PV+L++ +A LNP PG+++ D T GA G++ +  +           P  +S G     
Sbjct: 7   HIPVMLQETLAYLNPKPGEIVCDCTLGAAGHTVALAERIC--------PDGLSIGIDQDD 58

Query: 75  --------QETMRDYKEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDR 123
                     T      Q+   Q  FSQ+ + +      GVD V+FDLGVSS Q+D   R
Sbjct: 59  AAIAAATQHITRACPTAQYRFLQGNFSQIDELLLKAEVVGVDCVLFDLGVSSPQLDIPSR 118

Query: 124 GFSFQKSGPLDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           GFS+ ++ PLDMRM    + ++A++V+N  N  DLTRIL + G+EK A +IA  IVK RQ
Sbjct: 119 GFSYHENAPLDMRMDPRNNTLNAAEVINTYNEADLTRILRVFGDEKFAPQIARRIVKERQ 178

Query: 182 SAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           +   +TT +L  +I+ ++  + + +  HPA ++FQA+RI VN+E++ L  GL  A   L 
Sbjct: 179 TKAIETTFELVDIIKASIPAAARRHAKHPARKTFQAIRIEVNHELDVLQVGLERAIAWLN 238

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQED 299
            GG + V+S+HSLEDRLVK  FA  +   +      +       +   ITKK +  + E+
Sbjct: 239 TGGRMCVISYHSLEDRLVKHVFAQYARGCVCPVDLPVCVCHKKPIIDVITKKPLYASDEE 298

Query: 300 VAFNRRSRSAKLRAGMR 316
           VA N R+RSA +R   +
Sbjct: 299 VARNPRARSACMRVCKK 315


>gi|206561807|ref|YP_002232572.1| S-adenosyl-methyltransferase MraW [Burkholderia cenocepacia J2315]
 gi|263447024|sp|B4E6K0|RSMH_BURCJ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|198037849|emb|CAR53793.1| S-adenosyl-methyltransferase MraW [Burkholderia cenocepacia J2315]
          Length = 313

 Score =  342 bits (877), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 115/311 (36%), Positives = 176/311 (56%), Gaps = 19/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  V +D TFG GG+SR+     +    +IA D+DP A+   Q 
Sbjct: 7   HRTVLLDEAVESLVTRPDGVYVDGTFGRGGHSRAVLARLAPAARLIAFDKDPRAIETAQ- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +FS+   +F+ ++D +  +GV    GV+ DLGVSS Q+D   RGFSF+  GPL
Sbjct: 66  --GIKDARFSIVHDSFASMRDALAARGVEKVSGVLLDLGVSSPQVDDPARGFSFRADGPL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS----APFQTT 188
           DMRM  + G SA++ + +A+V++LT ++   GEE+ A +IA A+V RR       P  TT
Sbjct: 124 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDTT 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ ++   V   +     PATR+FQA+RI VN E+ +L   L +A   L+ GG L+V+
Sbjct: 184 GELAQIVGHVVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVI 242

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           SFHSLEDR+VK+F  + +      R +     +      + I++    P++ +VA N R+
Sbjct: 243 SFHSLEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPPLKIISR--QFPSEAEVAANPRA 300

Query: 307 RSAKLRAGMRT 317
           RSA +R   R 
Sbjct: 301 RSAVMRIAERV 311


>gi|167564207|ref|ZP_02357123.1| S-adenosyl-methyltransferase MraW [Burkholderia oklahomensis EO147]
 gi|167571357|ref|ZP_02364231.1| S-adenosyl-methyltransferase MraW [Burkholderia oklahomensis C6786]
          Length = 313

 Score =  341 bits (876), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 112/312 (35%), Positives = 174/312 (55%), Gaps = 19/312 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  V +D TFG GG+SR+          +IA D+DP A+   + 
Sbjct: 7   HRTVLLDEAVDALVTRPDGVYVDGTFGRGGHSRAVLGRLGAAGRLIAFDKDPRAIETAK- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +F +   +F+ L+  +  +GV    GV+ DLGVSS Q+D  +RGFSF+ +GPL
Sbjct: 66  --GIEDARFEIVHDSFAALKGALEARGVGRVSGVLLDLGVSSPQVDDPERGFSFRANGPL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS----APFQTT 188
           DMRM  + G SA++ + +A+V++LT ++   GEE+ A +IA AIV RR       P  +T
Sbjct: 124 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRLGPLDST 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ ++   V   +     PATR+FQA+RI VN E+ +L   L +A  +L+ GG L+V+
Sbjct: 184 GELAQIVGHVVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLEAALSSLEQGGRLVVI 242

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           SFHSLEDR+VK+F  + +      R +     +      + + +K   P+  +V  N R+
Sbjct: 243 SFHSLEDRIVKRFMQTHASAPAVDRRLPIRAVDLPSPPLKLLGRK--FPSDAEVLANPRA 300

Query: 307 RSAKLRAGMRTV 318
           RSA +R   R  
Sbjct: 301 RSAVMRIAERVA 312


>gi|90416328|ref|ZP_01224260.1| S-adenosyl-methyltransferase [marine gamma proteobacterium
           HTCC2207]
 gi|90332053|gb|EAS47267.1| S-adenosyl-methyltransferase [marine gamma proteobacterium
           HTCC2207]
          Length = 309

 Score =  341 bits (876), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 106/303 (34%), Positives = 166/303 (54%), Gaps = 6/303 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VLL + I  +   P    +D TFG GG++            V+A+D+DP A+  G++
Sbjct: 9   HTSVLLHEAIDAVVTDPDGFYIDGTFGRGGHTAELLSRLSEHGRVLAIDKDPQAIEAGRK 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
              D   + ++   +F+ + D+   + V GV+ DLGVSS Q+D  +RGFSF + GPLDMR
Sbjct: 69  RFAD-DSRLTIVHGSFADMGDWREGREVTGVLLDLGVSSPQLDQAERGFSFMRDGPLDMR 127

Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M  S G+SA++ ++ A   D+ +++   GEE+ A R+A A+V+ R  AP   T  L+ ++
Sbjct: 128 MDTSSGLSAAEWIDTAAEADIAQVIKEFGEERFAKRMAAAVVRERDLAPITRTVQLAKIL 187

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
                  +  + HPAT++FQA+RIF+N E+++L   L      LK  G L+V+SFHSLED
Sbjct: 188 ADAHPAWERGK-HPATKAFQAIRIFINRELDDLVALLEQVIDLLKIDGRLVVISFHSLED 246

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           R VK+F   +   +   +++   +    V      K + P   +V  N RSRSA +R   
Sbjct: 247 RKVKRFIRDQERGIKLPKNLPVRDVERGVRLKKIGKAIKPEAVEVGGNVRSRSAVMRVAE 306

Query: 316 RTV 318
           R  
Sbjct: 307 RVA 309


>gi|307731080|ref|YP_003908304.1| S-adenosyl-methyltransferase MraW [Burkholderia sp. CCGE1003]
 gi|307585615|gb|ADN59013.1| S-adenosyl-methyltransferase MraW [Burkholderia sp. CCGE1003]
          Length = 313

 Score =  341 bits (876), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 113/312 (36%), Positives = 174/312 (55%), Gaps = 19/312 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H  VLLE+ +  L      V +D TFG GG+SR   +       +IA D+DP A++  Q+
Sbjct: 7   HRTVLLEEAVEALVTRADGVYVDGTFGRGGHSRRVLEKLGEAGRLIAFDKDPLAIATAQQ 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +F++   +F+ L+  + ++G   V GV+ DLGVSS Q+D  +RGFSF+  GPL
Sbjct: 67  IA---DPRFAIVHESFASLRTAIAERGIERVSGVLLDLGVSSPQVDDPERGFSFRADGPL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS----APFQTT 188
           DMRM  + G SA+D + +A V++LT ++   GEE+ A +IA A+V RR       P  +T
Sbjct: 124 DMRMDPTRGESAADWLARATVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLVST 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ ++   V   +     PATR+FQA+RI +N E+ EL   L +A   L+ GG L+V+
Sbjct: 184 GELAQIVANVVKT-REKGKDPATRTFQAIRIHINQELAELQVVLEAALSLLEQGGRLVVI 242

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           SFHSLEDR+VK+F  + +      R +     +      + I +  +  +  +VA N R+
Sbjct: 243 SFHSLEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPPLKIIGR--IFASDAEVAANPRA 300

Query: 307 RSAKLRAGMRTV 318
           RSA +R   R  
Sbjct: 301 RSAVMRVAERIA 312


>gi|281356442|ref|ZP_06242934.1| S-adenosyl-methyltransferase MraW [Victivallis vadensis ATCC
           BAA-548]
 gi|281317134|gb|EFB01156.1| S-adenosyl-methyltransferase MraW [Victivallis vadensis ATCC
           BAA-548]
          Length = 314

 Score =  341 bits (876), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 116/314 (36%), Positives = 182/314 (57%), Gaps = 11/314 (3%)

Query: 15  HTIGDHVPVLLEKVIALL---NPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69
               +H+PVL  +V+  L   +  P ++ +D T G GG+S    +      ++ +DRD  
Sbjct: 2   EAAFEHIPVLRREVLKYLTFPSDRPARL-IDGTVGGGGHSALLLRRYPQLELLGIDRDEN 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFS 126
           A++   ET+     + +L +  +S L     + G   VDG++ D+GVSS Q+D   RGFS
Sbjct: 61  ALAKAAETLAFAGNRVTLVRGDYSSLAGRAAEHGWEEVDGILLDIGVSSPQLDHAGRGFS 120

Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           ++  GPLDMRM   S ++AS  +N+A+ ++L R+L   GE  ++ R+A AIVK+R++ PF
Sbjct: 121 WRAEGPLDMRMDQRSELTASRFLNRASEQELERVLREYGEVDKSRRVAAAIVKKRETHPF 180

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            TT DL  L  + +  SK  ++   T  FQALRI VN+E+ EL + L +AEK LK GG +
Sbjct: 181 ATTADLVGLCDEVLGKSKPGKLPAPTLVFQALRIAVNDELGELERALPAAEKLLKKGGRI 240

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           +V+SFHSLEDR+VK +F   +   +      +      +  + +T KVV   ++++A NR
Sbjct: 241 VVISFHSLEDRIVKNYFRDAAASCICPPGLPVCVCGKQSTLKVLTNKVVTAREDELAENR 300

Query: 305 RSRSAKLRAGMRTV 318
           RS  A+LRA  + V
Sbjct: 301 RSAPARLRAAEKLV 314


>gi|58584368|ref|YP_197941.1| S-adenosyl-methyltransferase MraW [Wolbachia endosymbiont strain
           TRS of Brugia malayi]
 gi|68565413|sp|Q5GTH5|RSMH_WOLTR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|58418684|gb|AAW70699.1| Predicted S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
          Length = 333

 Score =  341 bits (876), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 128/339 (37%), Positives = 185/339 (54%), Gaps = 52/339 (15%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQETM 78
           H+PVLL++++  L+P  G + +DATFGAGGYS++  +     V A+DRD   +   ++  
Sbjct: 3   HIPVLLKEMLLQLSPQNGGIYVDATFGAGGYSKAILESADCKVYAIDRDKTVIKFYEDLN 62

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKG----------------------------------- 103
             Y  +  LF   FS ++  +                                       
Sbjct: 63  IKYPSRVKLFIEKFSNIRSILDSNSLEYLVEPSAVSKLSSIISSGIQKKNIWISASSTGV 122

Query: 104 -----VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGIS-ASDVVNQANVKDLT 157
                VDGVVFD+GVSSMQ+D GDRGFSF   GPLDMRM  S  + AS  VN    +++ 
Sbjct: 123 TPSNTVDGVVFDIGVSSMQLDDGDRGFSFLHDGPLDMRMDNSSHTNASTFVNALREEEIA 182

Query: 158 RILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQAL 217
             +   G E+ + RIA AIV  R+    +TT +L+++++  V+  K ++I PATR+FQA+
Sbjct: 183 NTIYNYGGERHSRRIARAIVNARKKKTIKTTFELANIVRSVVFRGK-SKIDPATRTFQAI 241

Query: 218 RIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP 277
           RI+VN+E+ EL +G+++A + L   G LIVV+FHSLEDR+VK FF S            P
Sbjct: 242 RIWVNDELGELEKGIKAASEILNKNGKLIVVTFHSLEDRIVKTFFKSLCE---------P 292

Query: 278 SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
            +    VF  + KK++  + E+V  N RSRSAKLRA  R
Sbjct: 293 RSIDCKVFSLLNKKMIKASAEEVNANPRSRSAKLRAIQR 331


>gi|255994327|ref|ZP_05427462.1| S-adenosyl-methyltransferase MraW [Eubacterium saphenum ATCC 49989]
 gi|255993040|gb|EEU03129.1| S-adenosyl-methyltransferase MraW [Eubacterium saphenum ATCC 49989]
          Length = 311

 Score =  341 bits (876), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 107/309 (34%), Positives = 168/309 (54%), Gaps = 10/309 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            H PV+L + I  LN       +D T G GG+     K       +I +D+D  A+   +
Sbjct: 4   KHSPVMLHECIEALNIKEDGTYIDCTLGGGGHFTEIAKRLSEDGRLIGIDKDADAIDAYR 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQKSGP 132
               + + +  + ++ F  +++     G+DG   ++ DLGVSS Q+D   RGFS++   P
Sbjct: 64  RRNVNTRCKVDIVKSDFKDIREVAAKTGIDGADGILMDLGVSSYQLDKASRGFSYKNDAP 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM      +A  VVN+ + ++LTR++    +EK A+RIA AIV+ R+ A  ++T  L
Sbjct: 124 LDMRMDREQKFTAKTVVNEYSKEELTRVIREYSDEKWAARIAAAIVREREEAEIESTARL 183

Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           S +I++ +  + +    HPA R+FQA+RI VN E+  L + L+ A+  L   G L V+SF
Sbjct: 184 SEIIKEAIPAATRRTGPHPAKRTFQAIRIEVNGELGMLEKTLKDAKAILNKNGRLAVISF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT-KKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VKK+        +  +  IP  A       IT  K++ P+ +++  N R+RSA
Sbjct: 244 HSLEDRIVKKWIQDELHPCICPKD-IPVCACNRRSDIITVGKIICPSVDELDRNPRARSA 302

Query: 310 KLRAGMRTV 318
           KLR   R  
Sbjct: 303 KLRVIERVA 311


>gi|257092216|ref|YP_003165857.1| S-adenosyl-methyltransferase MraW [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257044740|gb|ACV33928.1| S-adenosyl-methyltransferase MraW [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 316

 Score =  341 bits (876), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 112/316 (35%), Positives = 175/316 (55%), Gaps = 17/316 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
            H  VLL++ +  L   P    +D TFG GG+SR+  +    G  ++A DRDP AV+   
Sbjct: 6   PHQTVLLQEAVEALAIKPAGTYVDGTFGRGGHSRAILQRLGTGGRLLAFDRDPQAVAMAS 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVP------DKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
               +   +  +    F  L D +       ++G+DGV+ D+GVSS Q+D   RGFSF+ 
Sbjct: 66  ---GETDARLLVMHERFGDLADALRRAGCAVEQGIDGVLLDIGVSSPQLDEHARGFSFRG 122

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM  + G +A+  + +A+ +++T ++   GEE+ A +IA  IV  R      TT
Sbjct: 123 DAPLDMRMDTTQGETAAQWLGRASEQEITEVIRNYGEERFAFQIAKKIVAARGERSVATT 182

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L++L+++TV   +  +   ATR+FQALRI +N E+E+LA  L  A   LKAGG L+V+
Sbjct: 183 GELAALVRQTVRTREPGQ-DAATRTFQALRIHINQELEQLALVLPQAMTVLKAGGRLVVI 241

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           SFHSLEDR+VK+F    +      R +    ++  P   + I  K V  +  ++A N R+
Sbjct: 242 SFHSLEDRIVKRFLRDEAAPDRLPRKLPLRAADLPPPRLRLI-GKPVRASAAEIAANPRA 300

Query: 307 RSAKLRAGMRTVERSI 322
           RSA +R   +   ++ 
Sbjct: 301 RSAIMRVAEKLARKAA 316


>gi|170700174|ref|ZP_02891192.1| S-adenosyl-methyltransferase MraW [Burkholderia ambifaria IOP40-10]
 gi|172059541|ref|YP_001807193.1| S-adenosyl-methyltransferase MraW [Burkholderia ambifaria MC40-6]
 gi|263446887|sp|B1YSR6|RSMH_BURA4 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|170134906|gb|EDT03216.1| S-adenosyl-methyltransferase MraW [Burkholderia ambifaria IOP40-10]
 gi|171992058|gb|ACB62977.1| S-adenosyl-methyltransferase MraW [Burkholderia ambifaria MC40-6]
          Length = 313

 Score =  341 bits (876), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 113/311 (36%), Positives = 176/311 (56%), Gaps = 19/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  + +D TFG GG+SR+          +IA D+DP A+    +
Sbjct: 7   HRTVLLDEAVESLVTRPDGIYVDGTFGRGGHSRAVLARLAEAGRLIAFDKDPRAIETA-Q 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + D   +FS+   +F+ ++D +  +G   V GV+ DLGVSS Q+D   RGFSF+  GPL
Sbjct: 66  RIEDA--RFSIVHDSFASMRDALAARGIEKVSGVLLDLGVSSPQVDDPARGFSFRADGPL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS----APFQTT 188
           DMRM  + G SA++ + +A+V++LT ++   GEE+ A +IA A+V RR       P  TT
Sbjct: 124 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDTT 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ ++   V   +     PATR+FQA+RI VN E+ +L   L +A   L+ GG L+V+
Sbjct: 184 GELAQIVGHVVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVI 242

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           SFHSLEDR+VK+F  + +      R +     +      + I++    P++ +V  N R+
Sbjct: 243 SFHSLEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPPLKIISR--QFPSEAEVVANPRA 300

Query: 307 RSAKLRAGMRT 317
           RSA +R   R 
Sbjct: 301 RSAVMRIAERV 311


>gi|256820422|ref|YP_003141701.1| S-adenosyl-methyltransferase MraW [Capnocytophaga ochracea DSM
           7271]
 gi|256582005|gb|ACU93140.1| S-adenosyl-methyltransferase MraW [Capnocytophaga ochracea DSM
           7271]
          Length = 304

 Score =  341 bits (875), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 107/311 (34%), Positives = 159/311 (51%), Gaps = 17/311 (5%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPF 69
           +++    H PVLL + I  LN       +D TFG GG+SR   K       + A D+D  
Sbjct: 1   MNNNTPYHTPVLLTQSIEGLNIKDNGTYVDVTFGGGGHSREILKHLGKNGRLYAFDQDAD 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFS 126
           A++   +      E+F+L Q  F  L+ Y+   GV   DGV+ D GVSS Q D  +RGFS
Sbjct: 61  ALNNTID-----DERFTLIQQNFKYLRQYLRFYGVTQVDGVLGDFGVSSHQFDVAERGFS 115

Query: 127 FQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
            +  G LDMRM+    +SA +VVN+    +LT I    GE K A  IA AI+  R+  P 
Sbjct: 116 TRFEGTLDMRMNQQAPLSAQEVVNEYGEIELTHIFFQYGELKNAKAIARAIISYREQKPI 175

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           +   +L   ++  +   K N++    + +QA+RI VN EIE L   L      +K  G +
Sbjct: 176 RLGSELQEAVKALLPKFKENKV--LAQIYQAIRIEVNAEIEALESFLLQLPAVVKPQGRI 233

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
            ++S+HSLEDR VK+F      +    +    + + P  F+ +   ++ P   ++A N R
Sbjct: 234 SLISYHSLEDRCVKRFIRDGQLEGAPEKDWYGNVSVP--FKKV-GGLITPDDTEIAQNSR 290

Query: 306 SRSAKLRAGMR 316
           +RSAKLR   R
Sbjct: 291 ARSAKLRIAER 301


>gi|126665254|ref|ZP_01736237.1| S-adenosyl-methyltransferase MraW [Marinobacter sp. ELB17]
 gi|126630624|gb|EBA01239.1| S-adenosyl-methyltransferase MraW [Marinobacter sp. ELB17]
          Length = 325

 Score =  341 bits (875), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 117/311 (37%), Positives = 175/311 (56%), Gaps = 9/311 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H  VLL+  + LL    G   +DATFG GG+SR   +  +    ++ +D+DP A+     
Sbjct: 15  HRSVLLDSAVDLLLTDSGGRYVDATFGRGGHSRMILERLAENGALLGIDKDPQAIDEA-R 73

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           T+     +F+ F  +F+ L   +       V+GV+ DLGVSS Q+D   RGFSF + GPL
Sbjct: 74  TLAAADSRFNAFHGSFADLGQALEQAHWPQVEGVLMDLGVSSPQLDDASRGFSFMRQGPL 133

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+     SA++ +  A+ K +  ++   GEE+ + RIA  IV+RR  AP  TT +L+
Sbjct: 134 DMRMNPQQAPSAAEWLASADEKVIADVIFKYGEERFSRRIARLIVERRAEAPITTTLELA 193

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            L  K V   K    HPATR+FQA+RIF+N E+E+L  GL++A + L  GG L+V+SFHS
Sbjct: 194 ELAAKAVP-KKEKHKHPATRTFQAIRIFINRELEDLELGLKAAAEKLAPGGRLVVISFHS 252

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDRLVK+F    +      + +  + A  +    +  K      ++V+ N R+RSA +R
Sbjct: 253 LEDRLVKRFMRDLARGPQMPKGIPVTAAEESSAYRLIGKPSKAASDEVSDNVRARSAVMR 312

Query: 313 AGMRTVERSIE 323
              R  + + E
Sbjct: 313 VLERRADIAQE 323


>gi|330446835|ref|ZP_08310486.1| S-adenosyl-methyltransferase MraW [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328491026|dbj|GAA04983.1| S-adenosyl-methyltransferase MraW [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 315

 Score =  341 bits (875), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 116/313 (37%), Positives = 169/313 (53%), Gaps = 19/313 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
           +HV VLL + +  L   P  + +D TFG GG+SR           + ++DRDP A++  Q
Sbjct: 6   EHVSVLLHESVDGLAIKPDGIYIDGTFGRGGHSRLILSQLGENGRLYSIDRDPQAIAEAQ 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +       +F +    FS ++ Y+  +     VDGV+ DLGVSS Q+D  +RGFSF + G
Sbjct: 66  KI---NDPRFEIIHGPFSGMEKYMEARDLIGRVDGVLLDLGVSSPQLDDAERGFSFMRDG 122

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ---SAPFQT 187
           PLDMRM   SG SA++ + +A   D+  +L   GEE+ A RIA  IV+ R+     P   
Sbjct: 123 PLDMRMDPTSGQSAAEWLAEAEADDIAWVLKEFGEERFAKRIARGIVEHRENPEKEPLTR 182

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T+ L+SLI +   F K+   HPATRSFQA+RI++N+E++E+   L  A   L   G L V
Sbjct: 183 TRQLASLIAEVSPF-KDKHKHPATRSFQAIRIYINSELDEIQTALNGAVNILAPEGRLSV 241

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF----QSITKKVVVPTQEDVAFN 303
           +SFHSLEDR+VK+F    S        +  +                K + P+Q ++  N
Sbjct: 242 ISFHSLEDRMVKRFIRKESKGPEVPAGLPLTEEQIKALGSAALKTVGKAIKPSQTELGHN 301

Query: 304 RRSRSAKLRAGMR 316
            R+RS+ LR   R
Sbjct: 302 TRARSSVLRLAER 314


>gi|326388910|ref|ZP_08210492.1| methyltransferase [Novosphingobium nitrogenifigens DSM 19370]
 gi|326206510|gb|EGD57345.1| methyltransferase [Novosphingobium nitrogenifigens DSM 19370]
          Length = 322

 Score =  341 bits (875), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 135/321 (42%), Positives = 192/321 (59%), Gaps = 13/321 (4%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCG 74
                H+PVL+++V+  L   PG  ++D TFGAGGYSR+    G+ V A DRDP A++ G
Sbjct: 5   DATSPHIPVLIDEVLVALGAGPGMTMVDGTFGAGGYSRALVAAGARVHAFDRDPDAIAAG 64

Query: 75  QETM--RDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQK 129
           +          Q  L    FS+L + + + GV   DGVVFD+GVSSMQ+D  +RGF+F  
Sbjct: 65  RLLAECAGEDPQLVLHHRRFSELAEGLAEAGVEQVDGVVFDIGVSSMQLDQANRGFAFSS 124

Query: 130 SGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            GPLDMRM+  G SA+D +N A+   +  +L I GEE+Q+ RIA AIV  R   P  TT+
Sbjct: 125 DGPLDMRMAQEGPSAADFLNTADEAAIADVLYIYGEERQSRRIARAIVAAR---PLTTTR 181

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
             + +++K + +       PATRSFQA+RI VN E++EL  GL +AE+ L  GG L VV+
Sbjct: 182 QFAEVVRKALGYRPGAPKDPATRSFQAVRIHVNGELDELTAGLAAAERVLAPGGRLAVVT 241

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKK---VVVPTQEDVAFNRRS 306
           FHSLEDR+VK+F    +G V A    +P  A  A  + + +K    + P +E++A N R+
Sbjct: 242 FHSLEDRIVKQFLREAAGLVPAGSRHLPVLASTA--RPVFEKPSSPIRPGEEELARNPRA 299

Query: 307 RSAKLRAGMRTVERSIEDDSF 327
           RSA LR  +R+   + +  S 
Sbjct: 300 RSATLRWAVRSDAPARQSGSH 320


>gi|193213705|ref|YP_001999658.1| S-adenosyl-methyltransferase MraW [Chlorobaculum parvum NCIB 8327]
 gi|263445798|sp|B3QLX2|RSMH_CHLP8 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|193087182|gb|ACF12458.1| S-adenosyl-methyltransferase MraW [Chlorobaculum parvum NCIB 8327]
          Length = 318

 Score =  341 bits (875), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 107/313 (34%), Positives = 169/313 (53%), Gaps = 18/313 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG------SNVIALDRDPFAVSC 73
           H PVL +   +LL   P  + +D T G GG+S    +        S ++ +D+D +A+  
Sbjct: 7   HEPVLADATTSLLVTRP-GIYIDGTLGGGGHSLELLRRLDALDGESLLVGIDQDSYALEA 65

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG--------VDGVVFDLGVSSMQIDCGDRGF 125
             + ++D+ ++  L +  FS +++ +            V G++ DLGVSS QID   RGF
Sbjct: 66  AGQKLQDFGDKAILLRGNFSMVRELLAPVKRGPGEGLEVMGLLLDLGVSSFQIDTPVRGF 125

Query: 126 SFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           S+ + GPLDMRM   G ++A+D+VN    + L R+    GEE    RIA A+V  R  AP
Sbjct: 126 SYLRDGPLDMRMDPDGPLTAADIVNDYEEQALARLFFRYGEEAHGGRIARAVVSARSVAP 185

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
             TT  L+ ++++     K++ I   +R +QALRI VN+E+  L Q L      L  GG 
Sbjct: 186 ITTTGGLAEVVRRACP-RKDSPIKTLSRIYQALRIEVNDELGVLQQALEDGFAVLSPGGR 244

Query: 245 LIVVSFHSLEDRLVKKFFASR-SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
             V+S+HSLEDR+VK+FF++R +         +     PA  + +T+K V   + +V+ N
Sbjct: 245 FAVISYHSLEDRIVKRFFSARCTADWGPKGLPLREPLKPAEAELVTRKSVQAGEAEVSRN 304

Query: 304 RRSRSAKLRAGMR 316
            R+RSA+LR   +
Sbjct: 305 PRARSARLRVIQK 317


>gi|220909120|ref|YP_002484431.1| S-adenosyl-methyltransferase MraW [Cyanothece sp. PCC 7425]
 gi|263446188|sp|B8HTI9|RSMH_CYAP4 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|219865731|gb|ACL46070.1| S-adenosyl-methyltransferase MraW [Cyanothece sp. PCC 7425]
          Length = 294

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 125/311 (40%), Positives = 171/311 (54%), Gaps = 26/311 (8%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDR 66
           M  +       H+PVL + VI  LN  PG   LDAT G GG+SR   +      V ALDR
Sbjct: 1   MIPSELEPEFLHIPVLSQAVIQGLNLRPGGHYLDATVGGGGHSRLILEAAPESQVTALDR 60

Query: 67  DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126
           D  A+   +  ++ Y E+   +Q+ F+  +        DG++ DLGVSS Q+D   RGFS
Sbjct: 61  DQQALQAARSALQPYGERVQFYQSNFADYES--GSLRFDGILADLGVSSAQLDQPQRGFS 118

Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           F+   PLDMRM     ++A+++VN A+ ++L  I    GEE+ A RIA  IV+ R   P 
Sbjct: 119 FRADAPLDMRMDQRQSLTAAELVNTASAEELADIFYYYGEERFARRIARRIVQHR---PL 175

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            TT  L+SL+ + +  S++  IHPATR FQALRI VN E+E L Q L  +   L  GG L
Sbjct: 176 YTTAQLASLVSRALP-SRSQSIHPATRVFQALRIAVNRELESLEQFLERSPHWLVTGGRL 234

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
            V+SFHSLEDR VK      S                 + Q +TKK ++P+ E+++ N R
Sbjct: 235 AVISFHSLEDRRVKHGLRDHS-----------------LLQVLTKKPILPSSEEISANPR 277

Query: 306 SRSAKLRAGMR 316
           +RSAKLR   R
Sbjct: 278 ARSAKLRLAQR 288


>gi|221213285|ref|ZP_03586260.1| S-adenosyl-methyltransferase MraW [Burkholderia multivorans CGD1]
 gi|221166737|gb|EED99208.1| S-adenosyl-methyltransferase MraW [Burkholderia multivorans CGD1]
          Length = 313

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 112/311 (36%), Positives = 174/311 (55%), Gaps = 19/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  + +D TFG GG+SR+          +IA D+DP A+   Q 
Sbjct: 7   HRTVLLDEAVESLVTRPDGIYVDGTFGRGGHSRAVLARLGPAGRLIAFDKDPRAIETAQS 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +FS+   +F+ ++D +  +G   V GV+ DLGVSS Q+D   RGFSF+  GPL
Sbjct: 67  MA---DARFSIVHDSFASMRDALAARGIEKVSGVLLDLGVSSPQVDDPARGFSFRADGPL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS----APFQTT 188
           DMRM  + G SA++ + +A++++LT ++   GEE+ A +IA A+V RR       P  +T
Sbjct: 124 DMRMDPTRGESAAEWLARASLQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDST 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ ++   V   +     PATR+FQA+RI VN E+ +L   L +A   L+ GG L+V+
Sbjct: 184 GELAQIVGHVVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVI 242

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           SFHSLEDR+VK+F  + +      R +     +      + I +    P++ +VA N R+
Sbjct: 243 SFHSLEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPPLKIIGR--QFPSEAEVAANPRA 300

Query: 307 RSAKLRAGMRT 317
           RSA +R   R 
Sbjct: 301 RSAVMRIAERV 311


>gi|282902029|ref|ZP_06309927.1| methyltransferase [Cylindrospermopsis raciborskii CS-505]
 gi|281193116|gb|EFA68115.1| methyltransferase [Cylindrospermopsis raciborskii CS-505]
          Length = 299

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 109/312 (34%), Positives = 165/312 (52%), Gaps = 26/312 (8%)

Query: 11  SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDP 68
           + ++     H+PVL E++I  L    G   LD T G GG+SR   +   N  V+A+D+D 
Sbjct: 9   TPLNQFTFSHIPVLGEELIRGLTIQAGGNYLDLTVGGGGHSRLILQAADNTKVMAVDQDL 68

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
            A+   +  + ++ ++       F+      P    DG++ DLGVSS  +D   RGFSF+
Sbjct: 69  DALKAAKINLSEFGDRVDFLHTNFANFP--FPPNTYDGILADLGVSSYHLDNPVRGFSFR 126

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
            +  LDMRM+    ++A+D+VN  N ++LT I    GEE+ + +IA  I++ R   PF T
Sbjct: 127 NTANLDMRMNQQQSLTAADIVNGWNEQELTHIFFHYGEERLSRKIARRIIENR---PFST 183

Query: 188 TQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T +L+  I   V    +  RIHPATR FQALR+ VN+E++ L   L  A  +L  GG + 
Sbjct: 184 TTELAESISSCVPPKYRYGRIHPATRVFQALRLAVNDELQVLETLLHKAPPSLVPGGKIA 243

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           ++SFHSLEDR+VK    +                   +   +TKK +  T+ ++  N RS
Sbjct: 244 LISFHSLEDRIVKHGLRNSD-----------------LLTVMTKKPITATESEIQHNPRS 286

Query: 307 RSAKLRAGMRTV 318
           RSAKLR   +  
Sbjct: 287 RSAKLRIAQKVA 298


>gi|50955157|ref|YP_062445.1| S-adenosyl-methyltransferase [Leifsonia xyli subsp. xyli str.
           CTCB07]
 gi|54036175|sp|Q6AE56|RSMH_LEIXX RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|50951639|gb|AAT89340.1| S-adenosyl-methyltransferase [Leifsonia xyli subsp. xyli str.
           CTCB07]
          Length = 325

 Score =  341 bits (874), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 125/325 (38%), Positives = 176/325 (54%), Gaps = 13/325 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSN--VIA 63
           MS  IH  I  H+PVLLE+ I LL PA   PG VI+DAT G GG+S           ++ 
Sbjct: 1   MSDDIHGDI--HLPVLLERCIELLAPALQEPGAVIVDATLGMGGHSAGILARFPQATLVG 58

Query: 64  LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDC 120
           LDRDP A++   E +  + ++  L    +  +++ +   G   V GV+FDLGVSS+Q+D 
Sbjct: 59  LDRDPDALAIAGERLARFGDRVHLVHTVYDGIREALDGLGIAEVQGVLFDLGVSSLQLDR 118

Query: 121 GDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS+ K  PLDMRM   S ++A  V+ +    DL RI    GEEK A+R A  IV  
Sbjct: 119 VERGFSYSKDAPLDMRMDGTSDLTAERVLAEYPEADLRRIFRDYGEEKLAARYAQRIVAA 178

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
           RQ  P   + +L  L+Q+    +   + HPA R FQALRI VN E+  L + L +A  AL
Sbjct: 179 RQQGPITRSGELVHLLQRATPAAIARQGHPAKRVFQALRIEVNQELAVLERALPAAVDAL 238

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
             GG L+V S+ SLEDR+VK+   +RS         +    H    + + +   +   ++
Sbjct: 239 AVGGRLVVESYQSLEDRIVKRELQTRSRSSAPAGLPVELPEHRPELRLLIRGAELADDDE 298

Query: 300 VAFNRRSRSAKLRAGMRTVERSIED 324
            A N R+   +LRA  RT  R+ ED
Sbjct: 299 KAANPRAAPVRLRAAERT--RASED 321


>gi|149198205|ref|ZP_01875252.1| putative S-adenosylmethionine-dependent methyltransferase
           [Lentisphaera araneosa HTCC2155]
 gi|149138807|gb|EDM27213.1| putative S-adenosylmethionine-dependent methyltransferase
           [Lentisphaera araneosa HTCC2155]
          Length = 311

 Score =  341 bits (874), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 109/307 (35%), Positives = 168/307 (54%), Gaps = 8/307 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76
            H+PVL E+VI  L P  G   +D T G GG+S      G +  ++ LD D  A+    E
Sbjct: 5   HHIPVLAEQVIDGLRPQNGGKFIDCTLGGGGHSSMILSSGPDVKLLGLDCDDNALRAASE 64

Query: 77  TMRDYKEQFSLFQATFSQL---QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  + ++F   +  F  L   +D      VDG++ D+GVSS  +D   RGF+++++GPL
Sbjct: 65  RLSSFGDRFKSKRLNFRDLAKLKDDAEWNQVDGILMDIGVSSHHLDEASRGFTYRENGPL 124

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     ++AS ++N+ +++ LT+I    GE K+A R+A A+V  R+   F  T+ L+
Sbjct: 125 DMRMDRRLKVTASMILNKESLEGLTKIFRDYGEMKEAYRLAKAVVADREKELFTHTEQLA 184

Query: 193 SLIQKTVYFSKNNRIHPA-TRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            L  +        + +PA T +FQALRI VN+E+  L  G+++A   LK GG L V+SFH
Sbjct: 185 GLADRVCVNRNRRKRNPAPTLAFQALRIAVNDELGALESGMKAAFDLLKPGGRLAVISFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK+FF  ++          I      A  + IT+K +     ++A N R+  AK
Sbjct: 245 SLEDRMVKEFFKDKATSCTCPPDLPICVCGSKAQMKIITRKPLTAESGELAENTRAACAK 304

Query: 311 LRAGMRT 317
           LR   + 
Sbjct: 305 LRVAEKI 311


>gi|325676969|ref|ZP_08156641.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Rhodococcus equi ATCC 33707]
 gi|325552269|gb|EGD21959.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Rhodococcus equi ATCC 33707]
          Length = 334

 Score =  341 bits (874), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 112/320 (35%), Positives = 175/320 (54%), Gaps = 18/320 (5%)

Query: 20  HVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69
           HVPVLL +   LL PA         G V++DAT G GG+S  F +     ++I LDRDP 
Sbjct: 15  HVPVLLNRADDLLGPAITADNPRGDGAVMIDATLGLGGHSEYFLRTYPGLHLIGLDRDPE 74

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD------GVVFDLGVSSMQIDCGDR 123
           A+    + +  Y ++ +     +  + + +   G+D       ++FDLGVSSMQ+D  DR
Sbjct: 75  ALRIASDRLAPYADRTTFVHTRYDGIVEALGQAGLDPVGSVHAILFDLGVSSMQLDEADR 134

Query: 124 GFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GF++    PLDMRM+ + GI+A++V+N  +  +L RIL   GEE+ A RIA  IV+RRQ 
Sbjct: 135 GFAYSIDAPLDMRMNPTTGITAAEVLNTYSHGELARILSTYGEERFAGRIASEIVRRRQK 194

Query: 183 APFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            PF T+  L  L+  T+  + +    HPA R+FQALR+ VN E++ L   + +   AL  
Sbjct: 195 QPFTTSAALVELLYDTIPAATRRTGGHPAKRTFQALRVEVNGELDSLRDAIPAGLDALAV 254

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           GG ++ +S+ SLEDR+VK+  A R+         +        F+ +T+     ++ ++ 
Sbjct: 255 GGRVVFMSYQSLEDRVVKQELAPRAKSKTPEGLPVELPGMGPEFKILTRGAERASEAEIE 314

Query: 302 FNRRSRSAKLRAGMRTVERS 321
            N R+   +LRA  R   ++
Sbjct: 315 DNPRAAPVRLRAAERIARKA 334


>gi|193214541|ref|YP_001995740.1| S-adenosyl-methyltransferase MraW [Chloroherpeton thalassium ATCC
           35110]
 gi|263446020|sp|B3QWS9|RSMH_CHLT3 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|193088018|gb|ACF13293.1| S-adenosyl-methyltransferase MraW [Chloroherpeton thalassium ATCC
           35110]
          Length = 321

 Score =  341 bits (874), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 108/317 (34%), Positives = 173/317 (54%), Gaps = 20/317 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--------VIALDRDPFAV 71
           H PVLLE+ +  L  +   + +DAT G  G+S+                +I +DRD  A+
Sbjct: 6   HKPVLLEESVHWL-VSESGMYIDATLGGAGHSKEILHRLETQHLLSNSLLIGIDRDANAI 64

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG--------VDGVVFDLGVSSMQIDCGDR 123
                 +  Y     + +  F+ L+  +   G        + G++ DLG+SS QID   R
Sbjct: 65  RAATTRLATYAAHAHILRGRFADLKLLLETNGLLDSGNHPIRGILLDLGISSHQIDAPAR 124

Query: 124 GFSFQKSGPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GFSFQ+SGPLDMRM   + ++A++VVN  + + L++I    GEE++A  IA  IV+ R+ 
Sbjct: 125 GFSFQQSGPLDMRMSDTAQLTAAEVVNHYDERSLSKIFFDYGEEREAKWIARKIVEARKQ 184

Query: 183 APFQTTQDLSSLIQKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            P +TT  L+ LI++ +       +     R FQA+RI VN E++EL   L++A + L  
Sbjct: 185 TPLETTAALALLIRQNLNRKSPVEQTKTLARIFQAIRIEVNGELDELKAVLQAAHEVLSE 244

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDV 300
            G L+V+S+HSLEDR+VK+FF   + +    + ++       A  + +TKK V+ ++E++
Sbjct: 245 KGRLVVISYHSLEDRIVKQFFNECASEDWGPKGVVLDVPIKTATMKILTKKPVLASEEEI 304

Query: 301 AFNRRSRSAKLRAGMRT 317
             N R+RSAKLR   + 
Sbjct: 305 QENSRARSAKLRVAEKI 321


>gi|171316199|ref|ZP_02905422.1| S-adenosyl-methyltransferase MraW [Burkholderia ambifaria MEX-5]
 gi|171098613|gb|EDT43410.1| S-adenosyl-methyltransferase MraW [Burkholderia ambifaria MEX-5]
          Length = 313

 Score =  341 bits (874), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 113/311 (36%), Positives = 176/311 (56%), Gaps = 19/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  + +D TFG GG+SR+          +IA D+DP A+    +
Sbjct: 7   HRTVLLDEAVESLVTRPDGIYVDGTFGRGGHSRAVLARLAEAGRLIAFDKDPRAIETA-Q 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + D   +FS+   +F+ ++D +  +G   V GV+ DLGVSS Q+D   RGFSF+  GPL
Sbjct: 66  RIEDA--RFSIVHDSFASMRDALAARGIEKVSGVLLDLGVSSPQVDDPARGFSFRADGPL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS----APFQTT 188
           DMRM  + G SA++ + +A+V++LT ++   GEE+ A +IA A+V RR       P  TT
Sbjct: 124 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDTT 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ ++   V   +     PATR+FQA+RI VN E+ +L   L +A   L+ GG L+V+
Sbjct: 184 GELAQIVGHVVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVI 242

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           SFHSLEDR+VK+F  + +      R +     +      + I++    P++ +V  N R+
Sbjct: 243 SFHSLEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPSLKIISR--QFPSEAEVVANPRA 300

Query: 307 RSAKLRAGMRT 317
           RSA +R   R 
Sbjct: 301 RSAVMRIAERV 311


>gi|325980947|ref|YP_004293349.1| S-adenosyl-methyltransferase MraW [Nitrosomonas sp. AL212]
 gi|325530466|gb|ADZ25187.1| S-adenosyl-methyltransferase MraW [Nitrosomonas sp. AL212]
          Length = 308

 Score =  341 bits (874), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 116/311 (37%), Positives = 173/311 (55%), Gaps = 15/311 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H PVLL   +  L   P  + +DATFG GG+SR           +IALDRDP AV  G+
Sbjct: 1   MHTPVLLHAAVDALALKPEGIYVDATFGRGGHSRLILSGLGECGRLIALDRDPAAVLSGE 60

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  ++F +   +FS++++ +       +DGV+ DLGVSS Q++   RGFSF+ +GP
Sbjct: 61  ---AITDKRFCIRHGSFSRVREILQAMEITRIDGVLLDLGVSSPQLEDTARGFSFRSAGP 117

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  SG  +AS+ ++  +  +L  ++   GEE+ A +IA AI+  R   P  TT  L
Sbjct: 118 LDMRMDTSGGQTASEWLSTVSESELEWVIKEYGEERFARQIARAILAARTQQPIATTLQL 177

Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           + ++   V    ++++ HPATR+FQA+RI++N E+EELA  L      L+ GG L+V+SF
Sbjct: 178 AGIVAAVVRARQRDSKRHPATRTFQAIRIYLNRELEELALVLPQCVDLLRPGGRLVVISF 237

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT----KKVVVPTQEDVAFNRRS 306
           HSLEDR+VK+F  + +      R +         F   T     + +   + +V  N RS
Sbjct: 238 HSLEDRMVKQFIRAAASTDNLPRGVPVREEELQRFSKQTLRPVGRAIRSNELEVTENVRS 297

Query: 307 RSAKLRAGMRT 317
           RSA +R G R 
Sbjct: 298 RSAVMRVGERI 308


>gi|124265647|ref|YP_001019651.1| S-adenosyl-methyltransferase MraW [Methylibium petroleiphilum PM1]
 gi|167011833|sp|A2SCX7|RSMH_METPP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|124258422|gb|ABM93416.1| S-adenosyl-methyltransferase MraW [Methylibium petroleiphilum PM1]
          Length = 318

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 125/307 (40%), Positives = 185/307 (60%), Gaps = 13/307 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H  VLL + +  L  +P    +D T+G GG+SR           ++A+DRDP AV+    
Sbjct: 10  HTTVLLHEAVDALVHSPDGYYVDGTYGRGGHSRLILSKLSAAGRLLAIDRDPDAVAHATS 69

Query: 77  TMRDY-KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                   +F +  A +S+L   +  +GV   DG++ D+GVSS QID  +RGFSF+ SGP
Sbjct: 70  GAARVTDPRFHIEHAPYSELPALLAARGVSRIDGLLLDIGVSSPQIDNPERGFSFRASGP 129

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR-QSAPFQTTQD 190
           LDMRM  + G SA+D + +A+ +++  ++   GEE+ A+ IA A+V RR    P +TT++
Sbjct: 130 LDMRMDPTRGESAADYLARADEREIAAVIRDYGEERFATAIARALVARRLAGRPVRTTEE 189

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ L+ + V   +  + +PATR+FQALRIFVN E+ +L QGL +A + LK GG L+V+SF
Sbjct: 190 LAELVAQAVKTREPGQ-NPATRTFQALRIFVNAELTQLEQGLAAALQCLKPGGRLVVISF 248

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDR+VK F AS S  V+  R      A P   +++ +  + P  ++VA N R+RSA 
Sbjct: 249 HSLEDRIVKTFIASHSKAVVDRRAPFAPPA-PMRLRALAR--LKPGADEVAANPRARSAI 305

Query: 311 LRAGMRT 317
           LR   RT
Sbjct: 306 LRVAERT 312


>gi|325519765|gb|EGC99070.1| 16S rRNA m(4)C1402 methyltranserfase [Burkholderia sp. TJI49]
          Length = 313

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 114/311 (36%), Positives = 174/311 (55%), Gaps = 19/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  V +D TFG GG+SR+       G  +IA D+DP A+   Q 
Sbjct: 7   HRTVLLDEAVESLVTRPDGVYVDGTFGRGGHSRAVLARLGPGGRLIAFDKDPRAIETAQ- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +FS+   +F+ ++D +  +GV    GV+ DLGVSS Q+D   RGFSF+  GPL
Sbjct: 66  --GIGDARFSIVHDSFASMRDALAARGVEKVSGVLLDLGVSSPQVDDPARGFSFRADGPL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS----APFQTT 188
           DMRM  + G SA++ + +A++++LT ++   GEE+ A +IA A+V RR       P  +T
Sbjct: 124 DMRMDPTRGESAAEWLARASLQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDST 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ ++   V   +     PATR+FQA+RI VN E+ +L   L +A   L+ GG L+V+
Sbjct: 184 GELAQIVGHAVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVI 242

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           SFHSLEDR+VK+F  + +      R +     +      + I +    P + +VA N R+
Sbjct: 243 SFHSLEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPPLKIIGR--QFPGEAEVAANPRA 300

Query: 307 RSAKLRAGMRT 317
           RSA +R   R 
Sbjct: 301 RSAVMRIAERV 311


>gi|182414441|ref|YP_001819507.1| S-adenosyl-methyltransferase MraW [Opitutus terrae PB90-1]
 gi|262824715|sp|B1ZU25|RSMH_OPITP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|177841655|gb|ACB75907.1| S-adenosyl-methyltransferase MraW [Opitutus terrae PB90-1]
          Length = 306

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 119/302 (39%), Positives = 165/302 (54%), Gaps = 6/302 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQET 77
           H PVLL +V+  L P      LD TFG GG++R+  +  +   V+ALDRDP A       
Sbjct: 5   HQPVLLREVLGFLAPRARGRYLDCTFGGGGHTRALLEAAAEVRVVALDRDPAAQPRAAAL 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
              + E+F      F +L + +P +G DGV+FD GVSS Q+D  +RGFSF+   P DMRM
Sbjct: 65  RETFGERFEFIDRDFGRLAE-LPHEGFDGVLFDFGVSSFQLDETERGFSFRHDAPADMRM 123

Query: 138 SC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
              SG+ AS  +  A  + L R +   GEE+   RI  AI   R +     T  L+ LI 
Sbjct: 124 DPRSGVPASQWLETATEEMLVRAIRDFGEEQHWRRIVRAIRDARGTGALARTASLAELIA 183

Query: 197 KTVYF--SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
             +        +IHPATR+FQ +RI VN+EI  + + L +A   L  GG+L V+SFHSLE
Sbjct: 184 AAIPACDRHAAKIHPATRAFQGVRIAVNDEIGAIERALPAAFAKLAPGGVLCVISFHSLE 243

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           DR  K+FF    G+  +     P +    +   +T++ V P  +++A N RSRSAKLRA 
Sbjct: 244 DRPAKQFFRRMCGQPESAADATPQDLRVKLADPLTRRPVTPADDELAANPRSRSAKLRAL 303

Query: 315 MR 316
            R
Sbjct: 304 RR 305


>gi|42559428|sp|P60399|RSMH_SPIKU RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|37781879|gb|AAP42766.1| putative S-adenosylmethionine-dependent methyltransferase
           [Spiroplasma kunkelii CR2-3x]
          Length = 313

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 110/309 (35%), Positives = 163/309 (52%), Gaps = 10/309 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76
            H  VLL++ I+ LN     + +D T G  G+S    K   N  +   ++D  A+   +E
Sbjct: 4   KHQTVLLQEAISGLNVQNNGIYVDCTLGRAGHSLEILKHLPNGKLYCFEQDEAAIVVSEE 63

Query: 77  TMRDYKEQ-FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            ++  K + + + +  F  L   +  + V   +G+++DLGVSS Q+D   RGFS++   P
Sbjct: 64  ILQKSKYRNYEIIKNNFVNLAAELQLRNVKAVNGILYDLGVSSPQLDDDKRGFSYRYDSP 123

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+   G++A  VVN  + + L ++    GEE  A  IA  IV  R      TT  L
Sbjct: 124 LDMRMNQHQGLTAKTVVNTYSQEALVKLFQDYGEEPFAKVIAKTIVIARNEQEIVTTFHL 183

Query: 192 SSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+K++      +  HPA R FQALRI VN E+  L + LR A   L   G L+V+SF
Sbjct: 184 VEIIKKSLPQKILKKAKHPAKRVFQALRIEVNQELFVLQESLRQATTLLAVHGRLVVISF 243

Query: 251 HSLEDRLVKKFFASRSGKV--MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+VKK+F S +        + +   +   + +  ITKKV+V +  +   N RSRS
Sbjct: 244 HSLEDRIVKKYFQSLTKDPNYEINQQLPAISYFESDYHIITKKVIVSSVTEQTNNHRSRS 303

Query: 309 AKLRAGMRT 317
           AKLR   R 
Sbjct: 304 AKLRILERV 312


>gi|307718580|ref|YP_003874112.1| S-adenosyl-methyltransferase MraW [Spirochaeta thermophila DSM
           6192]
 gi|306532305|gb|ADN01839.1| S-adenosyl-methyltransferase MraW [Spirochaeta thermophila DSM
           6192]
          Length = 324

 Score =  340 bits (872), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 117/318 (36%), Positives = 175/318 (55%), Gaps = 7/318 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77
           HVPVL E+V A L+     +++DAT G GG+S +  +   G  ++ +D DP  +S   E 
Sbjct: 8   HVPVLREEVGAFLSVRE-GLVVDATLGEGGHSEALLESRPGIRILGVDADPIMLSRAGER 66

Query: 78  MRDYKEQFSLFQATFSQ-LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
           +  + ++  L Q  F + L+ +  +    G++ DLG+SS  ++   RGFSF +  PLDMR
Sbjct: 67  LSRFGDRVRLVQGWFDEVLESFPAEDRPVGILMDLGISSYHLEKSGRGFSFLRREPLDMR 126

Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           +S    + ASDVVN  +  +L  I    GEE  + RIA AIV  R+  P  T+  L+ ++
Sbjct: 127 LSPYLPMKASDVVNTYSETELVDIFSRFGEEPFSKRIARAIVSERRKMPITTSDHLAEVV 186

Query: 196 QKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
            K V    +  RIHPATR FQALRI VN E+E + + +R+  + L  GG + V+SFHSLE
Sbjct: 187 MKAVPPKARRGRIHPATRVFQALRIVVNKELERVERAVRAGVRLLAPGGRMAVISFHSLE 246

Query: 255 DRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           DR+VK+ F   +G         I       + + +TKK V P +E+V  N  SRSA+LR 
Sbjct: 247 DRIVKRLFRFYAGACTCPPEEPICRCGGQGIVEVLTKKPVRPGEEEVRANPASRSARLRV 306

Query: 314 GMRTVERSIEDDSFVHLP 331
             +  + +   +    LP
Sbjct: 307 LEKVRDAAHLREEGHALP 324


>gi|212551099|ref|YP_002309416.1| S-adenosyl-methyltransferase MraW [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|226709918|sp|B6YS33|RSMH_AZOPC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|212549337|dbj|BAG84005.1| S-adenosyl-methyltransferase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 304

 Score =  340 bits (872), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 106/309 (34%), Positives = 168/309 (54%), Gaps = 16/309 (5%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72
           ++  H+PVLL++ +  LN   G + +D TFG GG+S+          ++   D+D  +  
Sbjct: 5   SVYHHIPVLLKESVDGLNVCSGGIYVDVTFGGGGHSKEILVRLGNTGHLYGFDQDEDSEK 64

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQK 129
                +     +F+  ++ F  L  ++    V   DG++ DLGVSS+  D  +RGFSF+ 
Sbjct: 65  NIFSDI-----RFTFVRSNFRYLAHFMDWHNVKEIDGLLADLGVSSIHFDDCNRGFSFRF 119

Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            G LDMRM+   G +A+D++N  +   L  +  + GE K ++ IAHAIV+ R     QT 
Sbjct: 120 IGNLDMRMNQRKGETAADILNTYSENKLIDMFDLYGELKNSASIAHAIVQARMQREIQTV 179

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           QD   +++  V   K  +     + FQALRI VN E++ L + L  A++ L++GG + ++
Sbjct: 180 QDFLDILKPFVRKGKVEK--QLAQIFQALRIEVNKELDALKEMLIQAKQLLRSGGRIAII 237

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           ++HSLEDRLVK FF + S      R    +   P  F+ I  +V+V + E+V  N RSRS
Sbjct: 238 TYHSLEDRLVKFFFKTGSFYEKIERDFYGNFLSP--FKIINHRVIVASDEEVKRNPRSRS 295

Query: 309 AKLRAGMRT 317
           AKLR   + 
Sbjct: 296 AKLRIAEKI 304


>gi|296116429|ref|ZP_06835043.1| S-adenosyl-methyltransferase MraW [Gluconacetobacter hansenii ATCC
           23769]
 gi|295977022|gb|EFG83786.1| S-adenosyl-methyltransferase MraW [Gluconacetobacter hansenii ATCC
           23769]
          Length = 340

 Score =  340 bits (872), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 125/322 (38%), Positives = 177/322 (54%), Gaps = 14/322 (4%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQE 76
           G H+PV+L +V+  L P  G   LD TFG GGY+R+        + A+DRDP A++ G  
Sbjct: 13  GGHIPVMLAEVLCDLAPRDGATYLDGTFGGGGYARAILSAAECTLWAIDRDPAAIARGAA 72

Query: 77  TMRDYKE-----QFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQ 128
               + +     +  L +  F  +   +  +GVD   GVV DLGVSS QID  +RGFSF+
Sbjct: 73  LATSFPDGQEQSRLRLIKGGFGDMASLLAARGVDALDGVVLDLGVSSYQIDQPERGFSFR 132

Query: 129 KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             GPLDMRM   G +A+DVVN+    +L  I+   GEE+ + R+A AIV  R   P  TT
Sbjct: 133 MDGPLDMRMGDEGTTAADVVNRYQESELADIIYTYGEERMSRRVARAIVAARAENPITTT 192

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ +++  V   + + I PATR+FQ LRI+VN+E+ ++ +GL  A   L  GG L+VV
Sbjct: 193 AALADIVRSVVRADR-SGIDPATRTFQGLRIYVNDELGQIERGLEQALGLLAPGGRLVVV 251

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA----HPAVFQSITKKVVVPTQEDVAFNR 304
           SFHSLEDRLVK      SG++       P  A        F+ +  K + P+  +   N 
Sbjct: 252 SFHSLEDRLVKLAMNRASGRMPGPSRHDPGAAMQSTQRPAFRLVRNKAIRPSDTECRHNP 311

Query: 305 RSRSAKLRAGMRTVERSIEDDS 326
           R+RSA+LR   R +     D +
Sbjct: 312 RARSARLRTVERVMTFPDTDSA 333


>gi|86134334|ref|ZP_01052916.1| MraW methylase family [Polaribacter sp. MED152]
 gi|85821197|gb|EAQ42344.1| MraW methylase family [Polaribacter sp. MED152]
          Length = 298

 Score =  340 bits (872), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 101/306 (33%), Positives = 168/306 (54%), Gaps = 17/306 (5%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSC 73
           +  H  VLL++ +  LN     + +D TFG GG+S+   K       + A D+DP A++ 
Sbjct: 1   MSYHNAVLLQESVDGLNIKEDGIYVDVTFGGGGHSKEILKRLGKNGRLFAFDQDPDAINN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
             +      E+F L    F  +  ++       VDG++ DLGVSS Q D  +RGFS +  
Sbjct: 61  AID-----DERFVLIPENFRYISRFLRFHRVKKVDGILADLGVSSHQFDEAERGFSIRFD 115

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
           G LDMRM+  S ISA +++N  + + L  IL + GE + + ++A  IV  R+++P +T+ 
Sbjct: 116 GDLDMRMNQKSKISAKEIINNYSEEKLAEILFLYGELRNSRKLARTIVHERKNSPIETSF 175

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            L  +++  +  ++ ++I    + FQA+RI VN E+E L + L+     L   G L V+S
Sbjct: 176 QLKEVLKAFLPNAREHKI--LAQIFQAIRIEVNEELEVLKEFLQQVPNLLNDEGRLSVIS 233

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           +HSLEDRLVK+F  +   +    + +  ++  P   + +  K++VP +E++  N R+RSA
Sbjct: 234 YHSLEDRLVKRFIRTGLFEGEPEKDVFGNSNEP--LKKV-GKLIVPPKEEIKINNRARSA 290

Query: 310 KLRAGM 315
           KLR   
Sbjct: 291 KLRLAT 296


>gi|114799717|ref|YP_761709.1| S-adenosyl-methyltransferase MraW [Hyphomonas neptunium ATCC 15444]
 gi|123128411|sp|Q0BXT4|RSMH_HYPNA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|114739891|gb|ABI78016.1| S-adenosyl-methyltransferase MraW [Hyphomonas neptunium ATCC 15444]
          Length = 342

 Score =  340 bits (872), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 149/339 (43%), Positives = 207/339 (61%), Gaps = 9/339 (2%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDP 68
           ++        H+PV+L +V+  L PA G+VI+D TFG GGY+ +  K     V+ +DRD 
Sbjct: 5   TTPRSPAEPGHLPVMLAEVLTALAPADGEVIVDGTFGGGGYTTAILKAANCTVLGIDRDL 64

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGF 125
            A+    E M     +       F  L       G   VDGVV D+GVSS QID  DRGF
Sbjct: 65  DAIVRA-EKMAQANPRLVPLLGCFGDLDTLAEQAGHASVDGVVLDIGVSSFQIDQADRGF 123

Query: 126 SFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           SF K GPLDMRM  SG SA+DVVN  + K L  ++  LGEEK + RIA  +V+RR  APF
Sbjct: 124 SFMKDGPLDMRMGGSGPSAADVVNTMSEKGLADVIFRLGEEKNSRRIARVLVQRRVQAPF 183

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           +TT DL++++++ V   +  R HPAT +FQA+R++VN+E+ ELA+GLR+AE+ LK GG L
Sbjct: 184 ETTADLAAVVEEAVGGRRGARSHPATLTFQAIRMYVNDELGELARGLRAAERILKPGGRL 243

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFN 303
           +VV+FHSLEDRLVK++   R+G V      +P  S      F+    K V P++++V  N
Sbjct: 244 VVVTFHSLEDRLVKQWLRERAGAVPGGSRHMPLMSKGPAPAFELQENKAVQPSEKEVETN 303

Query: 304 RRSRSAKLRAGMRTVERSIEDDSF--VHLPRLPTLSQFR 340
            R+RSAKLRA +RT   +  D++   ++LP L  L + R
Sbjct: 304 PRARSAKLRAAIRTNADAALDEASDGMNLPPLAELEKSR 342


>gi|119478644|ref|ZP_01618547.1| S-adenosyl-methyltransferase [marine gamma proteobacterium
           HTCC2143]
 gi|119448421|gb|EAW29672.1| S-adenosyl-methyltransferase [marine gamma proteobacterium
           HTCC2143]
          Length = 291

 Score =  340 bits (872), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 107/292 (36%), Positives = 169/292 (57%), Gaps = 11/292 (3%)

Query: 35  APGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91
            P  V +D TFG GG+SR          +++ +D+DP A++ G E +    E+F +   +
Sbjct: 3   RPAGVYVDGTFGRGGHSRRILTKLDAMGHLLGIDKDPQAIATGNE-LAVIDERFEIVHGS 61

Query: 92  FSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDV 147
           F++  + +     +G+DGV+ DLGVSS Q+D   RGFSF + GPLDMRM+   G+SA++ 
Sbjct: 62  FAETLELIRLRWPQGIDGVLLDLGVSSPQLDQSQRGFSFLRDGPLDMRMNTDAGMSAAEW 121

Query: 148 VNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRI 207
           V  A   ++ R+L   GEE+ A R+A AI+K R ++P +TT  L+ ++ +     +  + 
Sbjct: 122 VATATESEIARVLKEFGEERFAKRMARAIIKERMASPIETTLHLAKVVAEAHPAWERGK- 180

Query: 208 HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASR-S 266
           HPAT++FQA+RI++NNE+ +L Q L  A   L  GG L+V+SFHSLEDR+VK+F      
Sbjct: 181 HPATKAFQAIRIYINNELGDLRQFLDQALDVLNIGGRLVVISFHSLEDRMVKRFIRHHVR 240

Query: 267 GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318
           G  +     +  +      + +  K V  + E++  N RSRSA +R   +  
Sbjct: 241 GDQLPANLPVTVDQLNRRLRQV-GKAVKASAEEIDGNSRSRSAIMRVAEKIA 291


>gi|119717295|ref|YP_924260.1| S-adenosyl-methyltransferase MraW [Nocardioides sp. JS614]
 gi|262824666|sp|A1SL88|RSMH_NOCSJ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|119537956|gb|ABL82573.1| S-adenosyl-methyltransferase MraW [Nocardioides sp. JS614]
          Length = 319

 Score =  340 bits (872), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 118/308 (38%), Positives = 178/308 (57%), Gaps = 10/308 (3%)

Query: 20  HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74
           HVPVLL++V+ALL P     G V++DAT G GG++ +       + V+ +DRDP A++  
Sbjct: 6   HVPVLLDRVVALLAPPLEREGSVLVDATLGLGGHTEAVLTRFDLARVVGIDRDPEALALA 65

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
              +  + ++F+   A + +L D +   G   VD V+FDLGVSSMQ+D  +RGF++ +  
Sbjct: 66  GRRLAPFGDRFTGVHAVYDELPDVLARLGLDAVDAVLFDLGVSSMQLDVRERGFAYAEDA 125

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  S G +A+DV+N     DL RIL   GEE+ A +IA A+V+ R   PF  +  
Sbjct: 126 PLDMRMDGSTGPTAADVLNTYAAADLARILREYGEERFARKIAAAVVRERAKEPFTRSGR 185

Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  L+   +   ++    HPA R+FQALR+ VN+E+  L + + +A  A+  GG ++V S
Sbjct: 186 LVELLYAEIPAPARRTGGHPAKRTFQALRMEVNDELAVLRRAIPAAIDAIGVGGRVVVES 245

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           +HSLEDRLVK+ F + S   +          H    + +T+       E++A N R+ S 
Sbjct: 246 YHSLEDRLVKQAFVAASRLDVPEDLPFVPAGHEPALRLVTRGAEKAGPEEIALNPRAASV 305

Query: 310 KLRAGMRT 317
           +LRA  RT
Sbjct: 306 RLRAIERT 313


>gi|312795053|ref|YP_004027975.1| S-adenosyl-methyltransferase mraW [Burkholderia rhizoxinica HKI
           454]
 gi|312166828|emb|CBW73831.1| S-adenosyl-methyltransferase mraW (EC 2.1.1.-) [Burkholderia
           rhizoxinica HKI 454]
          Length = 317

 Score =  340 bits (872), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 115/324 (35%), Positives = 180/324 (55%), Gaps = 20/324 (6%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           M+SA+    G H  VLL++ +  L      + +D TFG GG+SR+     +    +IA D
Sbjct: 1   MASAMEKP-GQHRTVLLDEAVDALITRADGIYVDGTFGRGGHSRAVLARLAPAARLIAFD 59

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGD 122
           +DP A+   +        + ++   +F+QL+D +  +G   V GV+ DLGVSS QID   
Sbjct: 60  KDPQAIEVARGIA---DPRLNVVHGSFAQLRDVLAARGGVRVSGVLLDLGVSSPQIDDPA 116

Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF+  GPLDMRM  + G SA+  +   + ++L  ++   GEE+ A +IA AIV RR 
Sbjct: 117 RGFSFRHDGPLDMRMDPTRGESAAQWLAHVDERELIEVIRDYGEERFAVQIAKAIVARRA 176

Query: 182 S----APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
                 P   T++L+ ++ + V   +     PATR+FQA+RI +N E+ EL   L +A +
Sbjct: 177 ESGRLGPIVRTRELAEIVARAVKT-REKGQDPATRTFQAIRIHINQELAELPVVLETALE 235

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVP 295
           +L+ GG L+V+SFHSLEDR+VK+FF S +      R +    ++      + + +  V  
Sbjct: 236 SLEQGGRLVVISFHSLEDRIVKRFFQSHARAPAVDRRLPIRAADLPSPPLRILGR--VFA 293

Query: 296 TQEDVAFNRRSRSAKLRAGMRTVE 319
            + +VA N R+RSA +R   R + 
Sbjct: 294 GEAEVAANPRARSAVMRIAERVLA 317


>gi|269956076|ref|YP_003325865.1| S-adenosyl-methyltransferase MraW [Xylanimonas cellulosilytica DSM
           15894]
 gi|269304757|gb|ACZ30307.1| S-adenosyl-methyltransferase MraW [Xylanimonas cellulosilytica DSM
           15894]
          Length = 351

 Score =  340 bits (872), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 117/313 (37%), Positives = 182/313 (58%), Gaps = 11/313 (3%)

Query: 15  HTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPF 69
            T   H+PVLLE+ + LL PA   PG V++D T G GG++    +   +V  + +DRDP 
Sbjct: 8   STADRHLPVLLERCVDLLAPALAEPGSVLVDCTLGMGGHTEGVLERLPHVHVVGIDRDPQ 67

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVP----DKGVDGVVFDLGVSSMQIDCGDRGF 125
           A+      +  + ++F+   A + ++ D V     D GV GV+ DLGVSS+Q+D   RGF
Sbjct: 68  ALRLAAARLARFGDRFTPVHAVYDEIGDVVARLGYDDGVQGVLMDLGVSSLQLDEAGRGF 127

Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           ++ +  PLDMRM  + G +A+DV+N  +  +LTRIL   GEE+ A +IA +IV+RR   P
Sbjct: 128 AYAQDAPLDMRMDQTTGPTAADVLNTYDEHELTRILREYGEERFAGKIARSIVRRRAERP 187

Query: 185 FQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
           ++ T +L  L++  +  + +    +PA R+FQALRI VN E+E L + + +A +AL  GG
Sbjct: 188 WERTAELVDLVRACIPAATRKTGGNPAKRTFQALRIEVNGELEVLERAVPAAIEALAVGG 247

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            ++V S+HSLEDR+VK+  A  +         +    H A  +++T+        ++A N
Sbjct: 248 RIVVESYHSLEDRIVKRAIARGTTSSAPPGLPVEPETHRAYLEALTRGAEEADDAELARN 307

Query: 304 RRSRSAKLRAGMR 316
            RS S +LRA  R
Sbjct: 308 PRSASVRLRAAAR 320


>gi|111018109|ref|YP_701081.1| S-adenosyl-methyltransferase [Rhodococcus jostii RHA1]
 gi|123340963|sp|Q0SHR3|RSMH_RHOSR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|110817639|gb|ABG92923.1| S-adenosyl-methyltransferase [Rhodococcus jostii RHA1]
          Length = 338

 Score =  339 bits (871), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 115/322 (35%), Positives = 175/322 (54%), Gaps = 18/322 (5%)

Query: 20  HVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69
           H+PVLL +   LL PA         G V++DAT G GG+S  F +      +IALDRDP 
Sbjct: 17  HIPVLLHRADELLGPALTVNDPQGGGAVMIDATLGLGGHSEHFLRTYPQLRLIALDRDPH 76

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSSMQIDCGDR 123
           A+      +  + ++ +     +  ++D +   G      V G++FDLGVSSMQ+D  DR
Sbjct: 77  ALEIAGGRLAPFADRITFVHTRYDGIEDALDQAGLPAQESVHGILFDLGVSSMQLDESDR 136

Query: 124 GFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GF++    PLDMRM  + GI+A++V+N  +  DL RIL   GEE+ A +IA  IV++R  
Sbjct: 137 GFAYSIDAPLDMRMDPTTGITAAEVLNTYSHGDLARILSTYGEERFAGKIASEIVRQRAK 196

Query: 183 APFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            PF T+  L  L+ +++  + +    HPA R+FQALR+ VN E++ L   + +A  AL  
Sbjct: 197 EPFTTSAALVELLYRSIPAATRRTGGHPAKRTFQALRVEVNGELDSLRAAVPAALDALTV 256

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           GG ++ +S+ SLEDR+VK+    RS         +        F+ +T+     ++++V 
Sbjct: 257 GGRVVFMSYQSLEDRVVKQEITPRSKSKSPEGLPVELPGMGPEFRILTRGAERASEQEVE 316

Query: 302 FNRRSRSAKLRAGMRTVERSIE 323
            N RS   +LRA  R   RS  
Sbjct: 317 ENPRSAPVRLRAAERIARRSAA 338


>gi|322436313|ref|YP_004218525.1| S-adenosyl-methyltransferase MraW [Acidobacterium sp. MP5ACTX9]
 gi|321164040|gb|ADW69745.1| S-adenosyl-methyltransferase MraW [Acidobacterium sp. MP5ACTX9]
          Length = 297

 Score =  339 bits (871), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 129/313 (41%), Positives = 176/313 (56%), Gaps = 28/313 (8%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72
           T   HVPVLLE+ +  LN  PG V +DAT G GG+S +  K       +IA DRDP A+S
Sbjct: 2   TPQQHVPVLLEEALEYLNVRPGGVYVDATLGLGGHSSAIAKKLGGQGKLIAFDRDPDAMS 61

Query: 73  CGQETMRDYKEQ-------FSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125
             Q  +   KE+              FS+  D +    +DG++ D GVSSMQ+D   RGF
Sbjct: 62  KAQARLEALKEELGAEMPTVQFEPRAFSEAGDAIAKGSLDGLLADFGVSSMQLDEAHRGF 121

Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF+  GPLDMRM   SG +A  VVN+ +  +L  ++   GEE+++ RIA AIV+ R   P
Sbjct: 122 SFRSDGPLDMRMDTRSGETAGQVVNEEDENELADLIYEFGEERRSRRIARAIVRAR---P 178

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
             TT +L+ +I       K ++IHPATR+FQA+R+ VN+E+ E+   L+SA   LK GG 
Sbjct: 179 ISTTAELARIISAAAPPMKGDKIHPATRTFQAIRMRVNDELGEIQSLLKSAGSLLKPGGR 238

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           L+++SFHSLEDRLVK  F                      F  +TKK V+  +++   N 
Sbjct: 239 LVMISFHSLEDRLVKDAFREL--------------GRDKKFTVLTKKPVIAAEQESLRNP 284

Query: 305 RSRSAKLRAGMRT 317
           RSRSAKLRA  + 
Sbjct: 285 RSRSAKLRALEKV 297


>gi|311248051|ref|XP_003122950.1| PREDICTED: probable S-adenosyl-L-methionine-dependent
           methyltransferase METT5D1-like [Sus scrofa]
          Length = 405

 Score =  339 bits (871), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 129/335 (38%), Positives = 186/335 (55%), Gaps = 38/335 (11%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H+PV++++V+  L P  G+  LD TFG+GG++++  +  S+  + ALDRDP A +  ++ 
Sbjct: 70  HIPVMVDEVVHCLAPQKGQFFLDMTFGSGGHTKAILQKESDIILYALDRDPTAYAIAEQL 129

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              Y +Q       FSQ +  +   GV     DGV+ DLG SSMQ+D  +RGFS +K GP
Sbjct: 130 SEVYPKQIRALLGQFSQAEALLMKAGVQPGTLDGVLLDLGCSSMQLDSPERGFSLRKDGP 189

Query: 133 LDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           LDMRM         +A+DVVN  +   L  IL   GEEK A +IA AIV+ R   P   T
Sbjct: 190 LDMRMDGGRYPDMPTAADVVNALDQHALASILRAYGEEKHAKKIASAIVQARSIYPITRT 249

Query: 189 QDLSSLIQKTVYFSK--------NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           Q L+S++      S             H AT++FQA RIFVNNE+ EL  GL++A+K L+
Sbjct: 250 QQLASIVAGAFPPSAIYARKDLLQRSTHIATKTFQAFRIFVNNELNELYTGLKTAQKFLR 309

Query: 241 AGGLLIVVSFHSLEDRLVKKFF-------------------ASRSGKVMAVRHMIPSNAH 281
            GG L+ +SFHSLEDR++K+F                     S+ G  +  +  I +   
Sbjct: 310 PGGRLVALSFHSLEDRIIKRFLLGISMTERFNLSARQKVIQKSQLGSSLENKEGISTGKA 369

Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           P +++ + KKV+ P  +DV  N R RSAKLRA ++
Sbjct: 370 PLMWKLLHKKVLTPEDQDVQDNPRGRSAKLRAAIK 404


>gi|217979581|ref|YP_002363728.1| S-adenosyl-methyltransferase MraW [Methylocella silvestris BL2]
 gi|263456483|sp|B8ETL4|RSMH_METSB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|217504957|gb|ACK52366.1| S-adenosyl-methyltransferase MraW [Methylocella silvestris BL2]
          Length = 346

 Score =  339 bits (871), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 148/330 (44%), Positives = 195/330 (59%), Gaps = 8/330 (2%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQE 76
             H+PVL ++++ L  P    + LDATFGAGGYSR      G+ V+A+DRDP A++ G  
Sbjct: 17  ARHIPVLRDEILELAAPQADGLYLDATFGAGGYSRGLLATQGARVLAIDRDPGAIAAGAG 76

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + +   + +L +A FS L       G    D  +FD+GVSSMQ+D   RGFSF+  GPL
Sbjct: 77  LIAESNGRLTLVEARFSDLAAVAERLGLGAFDAALFDIGVSSMQLDEAARGFSFRFDGPL 136

Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           DMRM  SG SA+D+VN A+ + L  IL   GEE+ + RIA AIV  R  APF++T  L++
Sbjct: 137 DMRMQQSGPSAADIVNDADEEALADILYYFGEERASRRIAKAIVMDRAKAPFRSTAALAA 196

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           +I +     K   IHPATRSFQALRI VN+E+ EL  GL  AE  LK GG L VV+FHSL
Sbjct: 197 MIARVCP-GKPGDIHPATRSFQALRIAVNDELGELVAGLAGAEARLKPGGRLAVVTFHSL 255

Query: 254 EDRLVKKFFASRSGKVMAV--RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           EDR+VK FFA RSG+  A   R        P  F    ++ V P+  ++A N R+RSAKL
Sbjct: 256 EDRIVKLFFAGRSGRGEAPSRRLPGEPIPPPPTFAVSGRQPVTPSAAEIAANPRARSAKL 315

Query: 312 RAGMRTVERSIEDD-SFVHLPRLPTLSQFR 340
           R G+RT   +       + L  LP  +   
Sbjct: 316 RHGVRTSAPARAPGRDLMALAALPQRAAKG 345


>gi|315223498|ref|ZP_07865354.1| S-adenosyl-methyltransferase MraW [Capnocytophaga ochracea F0287]
 gi|314946533|gb|EFS98525.1| S-adenosyl-methyltransferase MraW [Capnocytophaga ochracea F0287]
          Length = 304

 Score =  339 bits (871), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 107/311 (34%), Positives = 158/311 (50%), Gaps = 17/311 (5%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPF 69
           +++    H PVLL + I  LN       +D TFG GG+SR   K       + A D+D  
Sbjct: 1   MNNNTPYHTPVLLTQSIEGLNIKDNGTYVDVTFGGGGHSREILKHLGKNGRLYAFDQDAD 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFS 126
           A++   +      E+F+L Q  F  L+ Y+   GV   DGV+ D GVSS Q D   RGFS
Sbjct: 61  ALNNTID-----DERFTLIQQNFKYLRQYLRFYGVTQVDGVLGDFGVSSHQFDVAQRGFS 115

Query: 127 FQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
            +  G LDMRM+    +SA +VVN+    +LT I    GE K A  IA AI+  R+  P 
Sbjct: 116 TRFEGTLDMRMNQQAPLSAQEVVNEYGEIELTHIFFQYGELKNAKAIARAIISYREQKPI 175

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           +   +L   ++  +   K N++    + +QA+RI VN EIE L   L      +K  G +
Sbjct: 176 RLGSELQEAVKTLLPKFKENKV--LAQIYQAIRIEVNAEIEALESFLLQLPAVVKPQGRI 233

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
            ++S+HSLEDR VK+F      +    +    + + P  F+ +   ++ P   ++A N R
Sbjct: 234 SLISYHSLEDRCVKRFIRDGQLEGAPEKDWYGNVSVP--FKKV-GGLITPDDTEIAQNSR 290

Query: 306 SRSAKLRAGMR 316
           +RSAKLR   R
Sbjct: 291 ARSAKLRIAER 301


>gi|254515249|ref|ZP_05127310.1| S-adenosyl-methyltransferase MraW [gamma proteobacterium NOR5-3]
 gi|219677492|gb|EED33857.1| S-adenosyl-methyltransferase MraW [gamma proteobacterium NOR5-3]
          Length = 308

 Score =  339 bits (870), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 115/309 (37%), Positives = 168/309 (54%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
              H  VLL + +  L  +P  + +D TFG GG+SR   K       + A D+D  A   
Sbjct: 2   AAPHETVLLHEAVDSLVSSPAGLYVDGTFGRGGHSREILKRLNDDGRLFACDKDEEAERD 61

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
             E +     +FS  + +F+ L   +   G   V G++ DLGVSS Q+D  +RGFSFQ  
Sbjct: 62  ALE-LAGEDGRFSFARGSFAALPALLAQHGLGPVHGILLDLGVSSPQLDQAERGFSFQHD 120

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
           GPLDMRM  S G SA+D +  A+ +++  +L   GEE+ A RIA AIV+ R   P   T 
Sbjct: 121 GPLDMRMDRSRGESAADWIASASEQEIIDVLREYGEERFARRIAGAIVRARAETPLTRTS 180

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            L++++ +     + ++ HPATR+FQA+RI VN E+++LA+ L  A   L  GG L+V+S
Sbjct: 181 QLAAIVSEAHPRWEKHK-HPATRAFQAIRIRVNRELDDLAELLSVALSVLAVGGRLVVIS 239

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRLVK+     S      R++   +        +  K    ++E+VA N RSRSA
Sbjct: 240 FHSLEDRLVKRHLRDMSRGPQLPRNLPVRDVESGAQMRLLGKAQRASKEEVAGNPRSRSA 299

Query: 310 KLRAGMRTV 318
            +R   +  
Sbjct: 300 IMRCAEKLA 308


>gi|284929250|ref|YP_003421772.1| S-adenosyl-methyltransferase MraW [cyanobacterium UCYN-A]
 gi|284809694|gb|ADB95391.1| S-adenosyl-methyltransferase MraW [cyanobacterium UCYN-A]
          Length = 298

 Score =  339 bits (870), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 118/302 (39%), Positives = 163/302 (53%), Gaps = 27/302 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           H+PVL +++I  L   PG + LDAT G GG+S        NV  I +D D  A+   +  
Sbjct: 16  HIPVLSQELIEGLAIKPGGIYLDATLGRGGHSNLILSTFPNVQVIGIDLDDDAILNTKTN 75

Query: 78  MRD-YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
           M    K++F  +   F      + +   DG++ DLGVSS Q+D  +RGFSF+    LDMR
Sbjct: 76  MSSSMKQRFQTWAGNFKDYPGKIEE--FDGIIADLGVSSPQLDNPERGFSFRHEASLDMR 133

Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M+    ++A +++N  +   L  I    GEEK++  IA  +V+ R   PF TT DL+S I
Sbjct: 134 MNREQSLTAEEIINHWSEITLANIFYQYGEEKRSRSIARYLVENR---PFFTTTDLASAI 190

Query: 196 QKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
            K      +  RIHPATR FQALRI VN+E+  L + L+ +   LK  G + ++SFHSLE
Sbjct: 191 SKVFPPKYRYGRIHPATRVFQALRIIVNDELTSLEKFLQQSPSWLKPQGNIGIISFHSLE 250

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           DR+VK  F   S                 +   ITKK ++P QE+   NRRSRSAKLR  
Sbjct: 251 DRIVKHTFRDSS-----------------LLDVITKKPIIPKQEEKYNNRRSRSAKLRFA 293

Query: 315 MR 316
            R
Sbjct: 294 KR 295


>gi|302868932|ref|YP_003837569.1| S-adenosyl-methyltransferase MraW [Micromonospora aurantiaca ATCC
           27029]
 gi|302571791|gb|ADL47993.1| S-adenosyl-methyltransferase MraW [Micromonospora aurantiaca ATCC
           27029]
          Length = 391

 Score =  339 bits (870), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 114/333 (34%), Positives = 184/333 (55%), Gaps = 11/333 (3%)

Query: 1   MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNP---APGKVI-LDATFGAGGYSRSFCK 56
           +  +    +   +    G HVPVLLE+ + LL P    PG+ + +DAT G  G++ +   
Sbjct: 11  VTERLANGVGVEMGELRGTHVPVLLERCLELLAPALGRPGRTVHVDATLGLAGHAEAVLS 70

Query: 57  MGSN--VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDL 111
              +  +I LDRD  A++  +  +  + ++  L  A + +L + +   G   +DGV+FDL
Sbjct: 71  AHPDTVLIGLDRDTEALAHARVRLARFADRIHLEHAVYDELPEVLDRLGYPAIDGVLFDL 130

Query: 112 GVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQAS 170
           GVSS+Q+D  DRGF++ +  PLDMRM  + G++A +VVN  +  DL R+L + GEEK A 
Sbjct: 131 GVSSLQLDAPDRGFAYAQDAPLDMRMDQTRGVTAEEVVNTYSHPDLARLLRVYGEEKFAG 190

Query: 171 RIAHAIVKRRQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELA 229
           +IA AI++ R+     ++  L+ L++  +   ++    HPA R+FQALRI VN E+  L 
Sbjct: 191 KIASAIIRERERNRITSSARLAELVRDAIPAPARRTGGHPAKRTFQALRIEVNRELAALE 250

Query: 230 QGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT 289
             L +A   L  GG ++V+S+HSLEDRL K+  A R      V   +        F+ ++
Sbjct: 251 TALPAALDKLTVGGRMVVLSYHSLEDRLTKQALADRVRSKGPVDLPVELPGSGPTFRLLS 310

Query: 290 KKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSI 322
           +   +P + +VA N R+ S +LRA  R    + 
Sbjct: 311 RGAELPGEAEVAANPRAASVRLRAAERLDPEAA 343


>gi|221065130|ref|ZP_03541235.1| S-adenosyl-methyltransferase MraW [Comamonas testosteroni KF-1]
 gi|220710153|gb|EED65521.1| S-adenosyl-methyltransferase MraW [Comamonas testosteroni KF-1]
          Length = 309

 Score =  339 bits (870), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 124/311 (39%), Positives = 179/311 (57%), Gaps = 17/311 (5%)

Query: 20  HVPVLLEKVIALL----NPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72
           H+ VLL++ +  L       P    +DATFG GG+SR   +       +IA D+DP A++
Sbjct: 7   HITVLLDEAVDALLGGAAEPPAGQWVDATFGRGGHSRLILRRLGPDGRLIAFDKDPDAIA 66

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              E  R    +FS+    F  L + +P+  V GV+ DLGVSS QID  DRGFSF+  GP
Sbjct: 67  ---EAARITDARFSIRHEGFRHLSE-LPEGSVQGVLMDLGVSSPQIDNPDRGFSFRFDGP 122

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ-SAPFQTTQD 190
           LDMRM  + G S ++ +  A V+ +  ++   GEE+ A  IA AIV RR+   P +TT +
Sbjct: 123 LDMRMDTTRGQSVAEWLEDAEVQQIAEVIRDYGEERFAGPIAKAIVARRESQGPLRTTAE 182

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ L+   V   +    +PATR+FQALRIF+N E++EL Q L ++ + L  GG L V+SF
Sbjct: 183 LAQLVAGAVKT-REAGQNPATRTFQALRIFINAELQELEQALEASLRVLAPGGRLAVISF 241

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDR+VK+F A  S +V   R    +   P   +++ +  + P+  +VA N RSRSA 
Sbjct: 242 HSLEDRIVKQFIAKHSKEVY-DRRAPFAPPTPMRLKALER--IKPSAAEVAANPRSRSAV 298

Query: 311 LRAGMRTVERS 321
           +R   RT   +
Sbjct: 299 MRVAERTEVPA 309


>gi|206889537|ref|YP_002249141.1| S-adenosyl-methyltransferase MraW [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|262825898|sp|B5YFU3|RSMH_THEYD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|206741475|gb|ACI20532.1| S-adenosyl-methyltransferase MraW [Thermodesulfovibrio yellowstonii
           DSM 11347]
          Length = 292

 Score =  339 bits (870), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 118/305 (38%), Positives = 180/305 (59%), Gaps = 26/305 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H+PV++++VI LLNP  G + +DAT G GG+S +  K       +I +DRD  A+     
Sbjct: 7   HIPVMVKEVIQLLNPY-GGIYVDATLGCGGHSLAILKRLSPDGRLIGIDRDESAIFYANR 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + D   +  L +A+FS L++ + +   + +DG++FDLGVS +Q+   +RGFSF     L
Sbjct: 66  ILDD--SRVILRKASFSHLKEVLSELNIEKIDGIIFDLGVSMLQLKDFERGFSFHSEERL 123

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  +  ++A DVVN+   + LT+I    G+E  A RIA  I+++R      T ++L+
Sbjct: 124 DMRMDQTEPLTAWDVVNKYPEQKLTQIFRDYGDEPFARRIAREIIRQRGKKTIDTCKELA 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            L++KTV   ++ R+HPAT+ FQA+RI VN E EEL QGL  A + L +GG + V+S+HS
Sbjct: 184 DLVKKTVP--RHGRLHPATQIFQAIRIEVNREFEELRQGLLQAVELLNSGGRICVISYHS 241

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
            EDR+VK FF                       + +TKK ++P+ E+VA N  +RSA+LR
Sbjct: 242 GEDRVVKNFFRE--------------EEQKGNLRILTKKPLLPSLEEVAKNPSARSARLR 287

Query: 313 AGMRT 317
            G + 
Sbjct: 288 GGEKI 292


>gi|39939221|ref|NP_950987.1| hypothetical protein PAM_735 [Onion yellows phytoplasma OY-M]
 gi|39722330|dbj|BAD04820.1| conserved hypothetical protein [Onion yellows phytoplasma OY-M]
          Length = 342

 Score =  339 bits (870), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 106/312 (33%), Positives = 167/312 (53%), Gaps = 14/312 (4%)

Query: 12  AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPF 69
           +++ T  +H+ VL ++ I  L   P  + +DAT G  G++     +     + + D+D  
Sbjct: 38  SMNKTHFNHISVLKQEAIDFLKIKPEGIYVDATLGQCGHTIEIANLLQQGFLYSFDQDVE 97

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFS 126
           A +  ++ +  +     +  + FS L+  +  + V   DG++FDLG+SS QID   RGFS
Sbjct: 98  ACTNAKKILPPHLP-IEIIHSNFSHLKTQLAQRNVFQLDGILFDLGLSSCQIDNPQRGFS 156

Query: 127 FQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           +  + PLDMRM+    I+A  ++N  +   L  I  + GE K A+ +A  I+K+R   P 
Sbjct: 157 YLHNTPLDMRMNVNQTITAQYILNNYSFAQLKNIFKVYGEVKNAALVASEIIKQR---PL 213

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            T+ DL ++   T  F    + H A + FQALRI VN E+E L Q L  +   LK   ++
Sbjct: 214 CTSYDLVAI---TDRFCNRQKGHSAKKIFQALRIEVNQELESLKQALEQSLDLLKPNAMI 270

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           +V+SFHSLEDR+VK FF   S  V+  +  I           ITKK  +P++E++  N R
Sbjct: 271 VVISFHSLEDRIVKHFFKKNSTFVLPKKMPITI-MPQTPLSIITKKAFLPSEEEMQNNSR 329

Query: 306 SRSAKLRAGMRT 317
           S SAKLR  ++ 
Sbjct: 330 SISAKLRVAVKN 341


>gi|161526013|ref|YP_001581025.1| S-adenosyl-methyltransferase MraW [Burkholderia multivorans ATCC
           17616]
 gi|189349270|ref|YP_001944898.1| S-adenosyl-methyltransferase MraW [Burkholderia multivorans ATCC
           17616]
 gi|263446911|sp|A9AJ24|RSMH_BURM1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|160343442|gb|ABX16528.1| S-adenosyl-methyltransferase MraW [Burkholderia multivorans ATCC
           17616]
 gi|189333292|dbj|BAG42362.1| S-adenosyl-methyltransferase [Burkholderia multivorans ATCC 17616]
          Length = 313

 Score =  339 bits (870), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 112/310 (36%), Positives = 174/310 (56%), Gaps = 19/310 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  + +D TFG GG+SR+          +IA D+DP A+   Q 
Sbjct: 7   HRTVLLDEAVESLVTRPDGIYVDGTFGRGGHSRAVLARLGPAGRLIAFDKDPRAIETAQ- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +FS+   +F+ ++D +  +G   V GV+ DLGVSS Q+D   RGFSF+  GPL
Sbjct: 66  --GIGDARFSIVHDSFASMRDALAARGIEKVSGVLLDLGVSSPQVDDPARGFSFRADGPL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS----APFQTT 188
           DMRM  + G SA++ + +A++++LT ++   GEE+ A +IA A+V RR       P  +T
Sbjct: 124 DMRMDPTRGESAAEWLARASLQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDST 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ ++   V   +     PATR+FQA+RI VN E+ +L   L +A   L+ GG L+V+
Sbjct: 184 GELAQIVGHVVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVI 242

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           SFHSLEDR+VK+F  + +      R +     +      + I +    P++ +VA N R+
Sbjct: 243 SFHSLEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPPLKIIGR--QFPSEAEVAANPRA 300

Query: 307 RSAKLRAGMR 316
           RSA +R   R
Sbjct: 301 RSAVMRIAER 310


>gi|197101179|ref|NP_001126687.1| probable methyltransferase-like protein 15 [Pongo abelii]
 gi|75054772|sp|Q5R5T5|MET15_PONAB RecName: Full=Probable methyltransferase-like protein 15; AltName:
           Full=Methyltransferase 5 domain-containing protein 1
 gi|55732357|emb|CAH92881.1| hypothetical protein [Pongo abelii]
          Length = 407

 Score =  339 bits (870), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 129/335 (38%), Positives = 187/335 (55%), Gaps = 38/335 (11%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H+PV++++V+  L+P  G++ LD TFG+GG++++  +  S+  + ALDRDP A +  +  
Sbjct: 72  HIPVMVDEVLHCLSPQKGQIFLDMTFGSGGHTKAILQKESDIVLYALDRDPTAYALAEHL 131

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              Y +Q       FSQ +  +   GV     DGV+ DLG SSMQ+D  +RGFS +K GP
Sbjct: 132 SELYPKQIRAMLGQFSQAETLLMKAGVQPGTFDGVLMDLGCSSMQLDTPERGFSLRKDGP 191

Query: 133 LDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           LDMRM         +A+DVVN  + + L  IL   GEEK A +IA AIV+ R   P   T
Sbjct: 192 LDMRMDGGRYPDMPTAADVVNAFDQQALASILRTYGEEKHAKKIASAIVQARSIYPITRT 251

Query: 189 QDLSSLIQKTVYFSK--------NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           Q L+S++      S             H AT++FQA+RIFVNNE+ EL  GL++A+K L+
Sbjct: 252 QQLASIVAGAFPPSAIYARKDLLQRSTHIATKTFQAVRIFVNNELNELYMGLKTAQKFLR 311

Query: 241 AGGLLIVVSFHSLEDRLVKKFF-------------------ASRSGKVMAVRHMIPSNAH 281
            GG L+ +SFHSLEDR++K+F                     S+ G        +     
Sbjct: 312 PGGRLVALSFHSLEDRIIKRFLLGISMTERFNLSVRQQVMKTSQLGSDHENTEEVSKRRA 371

Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           P +++ I KKV+ P  +DV  N R+RSAKLRA ++
Sbjct: 372 PLMWELIHKKVLSPQDQDVQDNPRARSAKLRAAIK 406


>gi|315504598|ref|YP_004083485.1| s-adenosyl-methyltransferase mraw [Micromonospora sp. L5]
 gi|315411217|gb|ADU09334.1| S-adenosyl-methyltransferase MraW [Micromonospora sp. L5]
          Length = 391

 Score =  339 bits (869), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 114/333 (34%), Positives = 184/333 (55%), Gaps = 11/333 (3%)

Query: 1   MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNP---APGKVI-LDATFGAGGYSRSFCK 56
           +  +    +   +    G HVPVLLE+ + LL P    PG+ + +DAT G  G++ +   
Sbjct: 11  VTERLANGVGVEMGELRGTHVPVLLERCLELLAPALGRPGRTVHVDATLGLAGHAEAVLS 70

Query: 57  MGSN--VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDL 111
              +  +I LDRD  A++  +  +  + ++  L  A + +L + +   G   +DGV+FDL
Sbjct: 71  AHPDTVLIGLDRDTEALAHARVRLARFADRIHLEHAVYDELPEVLDRLGYPAIDGVLFDL 130

Query: 112 GVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQAS 170
           GVSS+Q+D  DRGF++ +  PLDMRM  + G++A +VVN  +  DL R+L + GEEK A 
Sbjct: 131 GVSSLQLDAPDRGFAYAQDAPLDMRMDQTRGVTAEEVVNTYSHPDLARLLRVYGEEKFAG 190

Query: 171 RIAHAIVKRRQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELA 229
           +IA AI++ R+     ++  L+ L++  +   ++    HPA R+FQALRI VN E+  L 
Sbjct: 191 KIASAIIRERERNRITSSARLAELVRDAIPAPARRTGGHPAKRTFQALRIEVNRELAALE 250

Query: 230 QGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT 289
             L +A   L  GG ++V+S+HSLEDRL K+  A R      V   +        F+ ++
Sbjct: 251 TALPAALDKLTVGGRMVVLSYHSLEDRLTKQALADRVRSKGPVDLPVELPGSGPTFRLLS 310

Query: 290 KKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSI 322
           +   +P + +VA N R+ S +LRA  R    + 
Sbjct: 311 RGAELPGEAEVAANPRAASVRLRAAERLDPEAA 343


>gi|297571245|ref|YP_003697019.1| S-adenosyl-methyltransferase MraW [Arcanobacterium haemolyticum DSM
           20595]
 gi|296931592|gb|ADH92400.1| S-adenosyl-methyltransferase MraW [Arcanobacterium haemolyticum DSM
           20595]
          Length = 336

 Score =  339 bits (869), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 114/330 (34%), Positives = 174/330 (52%), Gaps = 11/330 (3%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGK--VILDATFGAGGYSRSFCKMGS--NVIAL 64
           MS    +    HVPVLL+ +I +L PA     V++D T G GG+S +F +      VI +
Sbjct: 1   MSKTADNN-ALHVPVLLQPIIDMLGPALEGDSVLIDCTLGMGGHSEAFLRTFPSLRVIGI 59

Query: 65  DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDC 120
           DRD  A+      +  + ++F     T+  +       G    VD ++ DLGVSS+Q+D 
Sbjct: 60  DRDEQAIELASARLAPFGDRFQAVHTTYDDVDRVAFTYGKSGCVDAILMDLGVSSLQLDE 119

Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            DRGFS+ +  PLDMRM  S G++A +++N  +  ++ RIL + GEEK AS+IA AIVKR
Sbjct: 120 VDRGFSYSQDAPLDMRMDTSKGMTAGELLNSYSHGEIARILRVYGEEKFASQIARAIVKR 179

Query: 180 RQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R+  P + T++L+ L++ T+   ++    +P+ R+FQALR+ VNNE++ L   +  A +A
Sbjct: 180 REDHPLERTRELADLVRDTIPAPARRKGGNPSKRTFQALRVAVNNELDVLEAAVPRALEA 239

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L+ GG + V S+ SLEDR+VK  F             I    H      +T+      + 
Sbjct: 240 LRVGGRIAVESYQSLEDRIVKDAFNVGLTSTSPAGLPIELADHAPYLAPLTRGAFKADRT 299

Query: 299 DVAFNRRSRSAKLRAGMRTVERSIEDDSFV 328
           +   N RS S +LR   R        D   
Sbjct: 300 EQELNPRSASVRLRGAERLRPTPSHIDQPF 329


>gi|325286918|ref|YP_004262708.1| Ribosomal RNA small subunit methyltransferase H [Cellulophaga
           lytica DSM 7489]
 gi|324322372|gb|ADY29837.1| Ribosomal RNA small subunit methyltransferase H [Cellulophaga
           lytica DSM 7489]
          Length = 298

 Score =  339 bits (869), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 103/307 (33%), Positives = 165/307 (53%), Gaps = 17/307 (5%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSC 73
           +  H PVLL++ +  L+     V +D TFG GG+SR           +I  D+D  A++ 
Sbjct: 1   MSYHNPVLLKESVDGLSIKEDGVYVDVTFGGGGHSREILSRLGEKGRLIGFDQDEDALAN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
             +      ++F L    F  ++ ++   G   VDG++ D GVSS Q D  +RGFS +  
Sbjct: 61  ALD-----DDRFLLINENFRYIKQFLKFHGIRKVDGILGDFGVSSHQFDKAERGFSTRFD 115

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRMS  + +SA DVVN     DL R+L   G+ + A+ +A+ I+  RQ    +TT 
Sbjct: 116 ADLDMRMSQKNTVSAFDVVNNYEYNDLRRVLFQYGDLRSANAMANTIIDYRQEGEIKTTD 175

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            L  +++K +   K ++I    + +QA+RI VN EI+ + + L      L  GG L ++S
Sbjct: 176 QLKQVLKKFLPAFKEHKI--LAQIYQAIRIEVNQEIQVIKEFLEQTNDLLVEGGRLSLIS 233

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           +HSLEDRLVK++  +   +    +    +   P  F+ +   ++VP++E++A N R+RSA
Sbjct: 234 YHSLEDRLVKRYIRAGKFEGEPEKDFYGNIDVP--FKKV-GGLIVPSKEEIAVNNRARSA 290

Query: 310 KLRAGMR 316
           KLR   R
Sbjct: 291 KLRIAER 297


>gi|126735371|ref|ZP_01751117.1| S-adenosyl-methyltransferase MraW [Roseobacter sp. CCS2]
 gi|126715926|gb|EBA12791.1| S-adenosyl-methyltransferase MraW [Roseobacter sp. CCS2]
          Length = 297

 Score =  339 bits (869), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 131/293 (44%), Positives = 180/293 (61%), Gaps = 8/293 (2%)

Query: 42  DATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP 100
           D TFG GGY+R+    G++ VI +DRDP A     + + DY ++       FS+L +Y  
Sbjct: 2   DGTFGNGGYTRALLAAGADKVIGVDRDPLAFEMAADWIGDYGDRIKTVAGVFSKLDEYGA 61

Query: 101 DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRIL 160
           D  +DGVV DLGVSSMQ+D  +RGFSF + GPLDMRMS  G SA+D+ N A+  +L  I+
Sbjct: 62  D--LDGVVLDLGVSSMQLDLAERGFSFMRDGPLDMRMSQDGPSAADLCNDADEAELADII 119

Query: 161 GILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIF 220
            + GEE+ + RIA AIV  R   P  TT  L+ +++  +  SK  + HPATR+FQALRI 
Sbjct: 120 YLYGEERASRRIAKAIVDAR---PLTTTLQLAKIVEGCLPRSKPGQSHPATRTFQALRIA 176

Query: 221 VNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA 280
           VNNE  ELA+GL +AE+ALK  G L VV+FHS+EDR+VK+F  +RSG         P   
Sbjct: 177 VNNEYGELAEGLMAAERALKPDGQLAVVTFHSVEDRMVKRFLQARSGNTANANRYAPEIE 236

Query: 281 H-PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIE-DDSFVHLP 331
                ++   +K + P + ++A N RSRSAKLR   RT   +   D + + +P
Sbjct: 237 QVTPAWRIEKRKAIGPDEAELAENPRSRSAKLRVASRTDAPAEPIDPAKLGMP 289


>gi|255536597|ref|YP_003096968.1| S-adenosyl-methyltransferase mraW [Flavobacteriaceae bacterium
           3519-10]
 gi|255342793|gb|ACU08906.1| S-adenosyl-methyltransferase mraW [Flavobacteriaceae bacterium
           3519-10]
          Length = 297

 Score =  339 bits (869), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 105/305 (34%), Positives = 160/305 (52%), Gaps = 17/305 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H PVLL + +  L   P  + +D TFG GG+S +  +       + + D+D  A+    E
Sbjct: 3   HNPVLLTRSVDDLVTNPDGIYVDVTFGGGGHSAAILRKLSSKGRLFSFDQDLDALKNTIE 62

Query: 77  TMRDYKEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                 ++F+L    F  L++ +     KGVDGV+ DLGVSS Q D  +RGFS +   PL
Sbjct: 63  -----DDRFTLINQNFRFLENSLMVYGIKGVDGVLADLGVSSHQFDAAERGFSTRSDAPL 117

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+    + A  V+N+   + L  I    GE ++A ++A  IV  R+  P +TT+DL 
Sbjct: 118 DMRMNVLQPLDAKKVINEYEEEQLADIFYYYGELREARKLAREIVHHRKLKPIETTEDLK 177

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            L      F +N       + FQA+RI VN E+E L + L  +   LK  G L+V+S+HS
Sbjct: 178 KLFSYIPQFKQN---KFFAQVFQAVRIEVNQELEVLKEMLVQSYNILKPNGRLVVISYHS 234

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDRLVK++  +   +    R +         F+ +  K V+P   ++  N R+RSAK+R
Sbjct: 235 LEDRLVKRYLKNGMFEGEPARDI--YGNFQKTFELLQTKAVIPDATEIEENSRARSAKMR 292

Query: 313 AGMRT 317
            G++ 
Sbjct: 293 VGIKI 297


>gi|323527438|ref|YP_004229591.1| S-adenosyl-methyltransferase MraW [Burkholderia sp. CCGE1001]
 gi|323384440|gb|ADX56531.1| S-adenosyl-methyltransferase MraW [Burkholderia sp. CCGE1001]
          Length = 313

 Score =  339 bits (869), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 114/312 (36%), Positives = 172/312 (55%), Gaps = 19/312 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H  VLLE+ +  L      V +D TFG GG+SR   +       +IA D+DP A++  Q+
Sbjct: 7   HRTVLLEEAVEALVTRADGVYVDGTFGRGGHSRLVLEKLSEAGRLIAFDKDPLAIATAQQ 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +F +   +F+ L+  +  +G   V GV+ DLGVSS Q+D  +RGFSF+  GPL
Sbjct: 67  IA---DPRFGIVHESFASLRTAIAARGIERVSGVLLDLGVSSPQVDDPERGFSFRADGPL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS----APFQTT 188
           DMRM  + G SA+D + +A V++LT ++   GEE+ A +IA A+V RR       P  +T
Sbjct: 124 DMRMDPTRGESAADWLARATVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLVST 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ ++   V   +     PATR+FQA+RI +N E+ EL   L +A   L+ GG L+V+
Sbjct: 184 GELAQIVANVVKT-REKGKDPATRTFQAIRIHINQELAELQVVLEAALALLEQGGRLVVI 242

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           SFHSLEDR+VK+F  + +      R +     +      + I +  V  +  +VA N R+
Sbjct: 243 SFHSLEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPPLKIIGR--VFASDAEVAANPRA 300

Query: 307 RSAKLRAGMRTV 318
           RSA +R   R  
Sbjct: 301 RSAVMRVAERIA 312


>gi|302528477|ref|ZP_07280819.1| MraW methylase [Streptomyces sp. AA4]
 gi|302437372|gb|EFL09188.1| MraW methylase [Streptomyces sp. AA4]
          Length = 318

 Score =  339 bits (869), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 114/315 (36%), Positives = 169/315 (53%), Gaps = 10/315 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFA 70
              +HVPVLL++++ L  PA      V++DAT G GG+S +       +  I LDRDP A
Sbjct: 3   DSAEHVPVLLDRIVELFAPALADRDAVLVDATVGLGGHSDALLSAFPRLRLIGLDRDPAA 62

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSF 127
           +    E +  + ++  L    +  L + V   G   VDG++FDLGVSSMQ+D  +RGF++
Sbjct: 63  LERSAERLARHGDRVDLVHTVYDGLPEAVSGLGLSRVDGILFDLGVSSMQLDRAERGFAY 122

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
            +  PLDMRM  + G +A+DV+N     +L RIL   GEE+ A RI  A+V  R+  PF 
Sbjct: 123 SQDAPLDMRMDPTTGFTAADVLNTYAPGELIRILRDYGEERFAQRIVRAVVAEREKEPFT 182

Query: 187 TTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            +  L  L+   V  + +    HPA R+FQALRI VN E+E L + + +A   L   G +
Sbjct: 183 RSGRLVELLYSAVPAASRRTGGHPAKRTFQALRIEVNGELEVLRRAMPAALGTLAMNGRI 242

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           +V S+ SLEDRLVK+  A R+         +    H    + +T+      + ++  N R
Sbjct: 243 VVESYQSLEDRLVKQALAERAKSRTPEGLPVELPGHGPELKLLTRGAEKAGESEIEHNPR 302

Query: 306 SRSAKLRAGMRTVER 320
           + S +LRA  R  E 
Sbjct: 303 AASVRLRAAQRIGEP 317


>gi|85058419|ref|YP_454121.1| S-adenosyl-methyltransferase MraW [Sodalis glossinidius str.
           'morsitans']
 gi|123520087|sp|Q2NVV9|RSMH_SODGM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|84778939|dbj|BAE73716.1| conserved hypothetical protein [Sodalis glossinidius str.
           'morsitans']
          Length = 315

 Score =  339 bits (869), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 119/312 (38%), Positives = 174/312 (55%), Gaps = 17/312 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H  VLL++ +  LN  P  V LD TFG GG+SR           + A+DRDP A+   + 
Sbjct: 7   HTTVLLDEAVKGLNLRPDSVYLDGTFGRGGHSRLILSKLGAQGRLFAIDRDPAAIEAAR- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  +F++    FS + +Y+  +     VDG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 66  --AIEDARFAIIHGPFSAMAEYMAQRDLLGKVDGILLDLGVSSPQLDDPERGFSFMRDGP 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G SA+  + QA+ +D+  +L   GEE+ A RIA AIV   +  P   T++L
Sbjct: 124 LDMRMDTTRGQSAAQWLAQASAEDIAWVLKTFGEERFAKRIAQAIVAHNRQQPMTRTREL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           ++LI     F ++   HPATRSFQA+RI++N+E+EE+ + L  A   L  GG L V+SFH
Sbjct: 184 AALIADASPF-RDKHKHPATRSFQAIRIYINSELEEIERALDGALTVLAPGGRLSVISFH 242

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV---FQSITKKV--VVPTQEDVAFNRRS 306
           SLEDRLVK+F    S        +  + A  A     Q + K    + P+  +++ N R+
Sbjct: 243 SLEDRLVKQFIRQHSRGPQVPAGLPLTEAQIAAQYQDQRLLKAAGKMQPSAREISDNPRA 302

Query: 307 RSAKLRAGMRTV 318
           RS+ LR   +  
Sbjct: 303 RSSVLRFAEKLA 314


>gi|6685115|gb|AAF23786.1|AF213822_1 hypothetical protein [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 333

 Score =  339 bits (869), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 141/331 (42%), Positives = 199/331 (60%), Gaps = 11/331 (3%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSNVIALDRD 67
           M+S     +  H+PVLL++VI  L+P  G + +D TFGAGGYSR+   K  + VIA DRD
Sbjct: 1   MTS--DSFLAPHIPVLLDEVIEALSPVEGGIYIDGTFGAGGYSRAILEKADTQVIAFDRD 58

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQL---QDYVPDKGVDGVVFDLGVSSMQIDCGDRG 124
           P A+  G   +  YK +  L    FS +    D +  K VDG+VFD+GVSSMQID  +RG
Sbjct: 59  PDAIREGASLVEKYKGRLRLVNDCFSNIGHHLDALDIKTVDGMVFDIGVSSMQIDRPERG 118

Query: 125 FSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           FS Q  GPLDMRM+ +G+SA +++N A  KD+  +L + GEE+Q+ R+A AIV  R +A 
Sbjct: 119 FSIQADGPLDMRMAQAGLSAEELLNNAQEKDIADVLYLYGEERQSRRVATAIV--RGTAF 176

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
            +    L+ +I++++ +   ++  PA   FQA+RI +N E++EL  GL++AE+ LK  G 
Sbjct: 177 KRRLFRLAKVIRQSLGYRPFDKKDPAAHCFQAIRIHLNRELDELKDGLQTAERFLKTKGC 236

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
           L VV+FHSLEDR+VK F    +G+     RH         VF S   + V   + ++A N
Sbjct: 237 LAVVTFHSLEDRIVKHFMREHAGQTGQVSRHQPVIPQQNPVFFSKPARPVRAGETELARN 296

Query: 304 RRSRSAKLRAGMRTVERSIEDDSF--VHLPR 332
            R+RSA LRA  RT     ED S    H+PR
Sbjct: 297 PRARSATLRAVYRTETPFSEDISRPDTHIPR 327


>gi|264680254|ref|YP_003280164.1| S-adenosyl-methyltransferase MraW [Comamonas testosteroni CNB-2]
 gi|262210770|gb|ACY34868.1| S-adenosyl-methyltransferase MraW [Comamonas testosteroni CNB-2]
          Length = 309

 Score =  339 bits (869), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 124/311 (39%), Positives = 178/311 (57%), Gaps = 17/311 (5%)

Query: 20  HVPVLLEKVIALL----NPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72
           H+ VLL++ +  L       P    +DATFG GG+SR   +       +IA D+DP A++
Sbjct: 7   HITVLLDEAVDALLGGAAKPPAGQWVDATFGRGGHSRLILQRLGPDGRLIAFDKDPDAIA 66

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              E  R    +FS+    F  L + +P+  V GV+ DLGVSS QID  DRGFSF+  GP
Sbjct: 67  ---EAARITDARFSIRHEGFRHLGE-LPEGSVQGVLMDLGVSSPQIDNPDRGFSFRFDGP 122

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ-SAPFQTTQD 190
           LDMRM  + G S ++ +  A V+ +  ++   GEE+ A  IA AIV RR+   P +TT +
Sbjct: 123 LDMRMDTTRGQSVAEWLEDAEVQQIAEVIRDYGEERFAGPIAKAIVARRESQGPLRTTAE 182

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ L+   V   +    +PATR+FQALRIF+N E++EL Q L ++ + L  GG L V+SF
Sbjct: 183 LAQLVAGAVKT-REAGQNPATRTFQALRIFINAELQELEQALEASLRVLAPGGRLAVISF 241

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDR+VK+F A  S +V   R      A P   +++ +  + P+  +V  N RSRSA 
Sbjct: 242 HSLEDRIVKQFIAKHSKEVYDRRAPFAPPA-PMRLKALER--IKPSAAEVDANPRSRSAV 298

Query: 311 LRAGMRTVERS 321
           +R   RT   +
Sbjct: 299 MRVAERTEVPA 309


>gi|42559426|sp|P60397|RSMH_ONYPE RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 304

 Score =  338 bits (868), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 106/311 (34%), Positives = 166/311 (53%), Gaps = 14/311 (4%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70
           ++ T  +H+ VL ++ I  L   P  + +DAT G  G++     +     + + D+D  A
Sbjct: 1   MNKTHFNHISVLKQEAIDFLKIKPEGIYVDATLGQCGHTIEIANLLQQGFLYSFDQDVEA 60

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSF 127
            +  ++ +  +     +  + FS L+  +  + V   DG++FDLG+SS QID   RGFS+
Sbjct: 61  CTNAKKILPPHLP-IEIIHSNFSHLKTQLAQRNVFQLDGILFDLGLSSCQIDNPQRGFSY 119

Query: 128 QKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
             + PLDMRM+    I+A  ++N  +   L  I  + GE K A+ +A  I+K+R   P  
Sbjct: 120 LHNTPLDMRMNVNQTITAQYILNNYSFAQLKNIFKVYGEVKNAALVASEIIKQR---PLC 176

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T+ DL ++   T  F    + H A + FQALRI VN E+E L Q L  +   LK   +++
Sbjct: 177 TSYDLVAI---TDRFCNRQKGHSAKKIFQALRIEVNQELESLKQALEQSLDLLKPNAMIV 233

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+SFHSLEDR+VK FF   S  V+  +  I           ITKK  +P++E++  N RS
Sbjct: 234 VISFHSLEDRIVKHFFKKNSTFVLPKKMPITI-MPQTPLSIITKKAFLPSEEEMQNNSRS 292

Query: 307 RSAKLRAGMRT 317
            SAKLR  ++ 
Sbjct: 293 ISAKLRVAVKN 303


>gi|299533126|ref|ZP_07046511.1| S-adenosyl-methyltransferase MraW [Comamonas testosteroni S44]
 gi|298718903|gb|EFI59875.1| S-adenosyl-methyltransferase MraW [Comamonas testosteroni S44]
          Length = 309

 Score =  338 bits (868), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 122/311 (39%), Positives = 178/311 (57%), Gaps = 17/311 (5%)

Query: 20  HVPVLLEKVIALL----NPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72
           H+ VLL++ +  L       P    +DATFG GG+SR   +       +IA D+DP A++
Sbjct: 7   HITVLLDEAVDALLGGAAKPPAGQWVDATFGRGGHSRLILQRLGPDGRLIAFDKDPDAIA 66

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              E  R    +FS+    F  L + +P+  V GV+ DLGVSS QID  DRGFSF+  GP
Sbjct: 67  ---EAARITDARFSIRHEGFRHLGE-LPEGSVQGVLMDLGVSSPQIDNPDRGFSFRFDGP 122

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ-SAPFQTTQD 190
           LDMRM  + G S ++ +  A V+ +  ++   GEE+ A  IA AIV RR+   P +TT +
Sbjct: 123 LDMRMDTTRGQSVAEWLEDAEVQQIAEVIRDYGEERFAGPIAKAIVARRESQGPLRTTAE 182

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ L+   V   +    +PATR+FQALRIF+N E++EL Q L ++ + L  GG L V+SF
Sbjct: 183 LAQLVAGAVKT-REAGQNPATRTFQALRIFINAELQELEQALEASLRVLAPGGRLAVISF 241

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDR+VK+F A  S ++   R    +   P   +++ +  + P+  +V  N RSRSA 
Sbjct: 242 HSLEDRIVKQFIAKHSKEIY-DRRAPFAPPTPMRLKALER--IKPSAAEVDANPRSRSAV 298

Query: 311 LRAGMRTVERS 321
           +R   RT   +
Sbjct: 299 MRVAERTEVPA 309


>gi|297268188|ref|XP_001088477.2| PREDICTED: putative S-adenosyl-L-methionine-dependent
           methyltransferase METT5D1-like isoform 1 [Macaca
           mulatta]
          Length = 407

 Score =  338 bits (868), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 130/335 (38%), Positives = 185/335 (55%), Gaps = 38/335 (11%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H+PV++++V+  L+P  G++ LD TFG+GG++++  +  S+  + ALDRDP A +  +  
Sbjct: 72  HIPVMVDEVVHCLSPQKGQIFLDMTFGSGGHTKAILQKESDIVLYALDRDPTAYALAEHL 131

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              Y +Q       FSQ +  +   GV     DGV+ DLG SSMQ+D  +RGFS +K GP
Sbjct: 132 SELYPKQIRAVLGQFSQAEALLTKAGVQPGTFDGVLMDLGCSSMQLDTPERGFSLRKDGP 191

Query: 133 LDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           LDMRM         +A+DVVN  +   L  IL   GEEK A +IA AIV+ R   P   T
Sbjct: 192 LDMRMDGGRYPDMPTAADVVNALDQPALASILRTYGEEKHARKIASAIVQARSIYPITRT 251

Query: 189 QDLSSLIQKTVYFSK--------NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           Q L+S++      S             H AT++FQALRIFVNNE+ EL  GL++A+K L+
Sbjct: 252 QQLASIVAGAFPPSAIYARKDLLQRSTHIATKTFQALRIFVNNELNELYTGLKTAQKFLR 311

Query: 241 AGGLLIVVSFHSLEDRLVKKFF-------------------ASRSGKVMAVRHMIPSNAH 281
            GG L+ +SFHSLEDR++K+F                     S+ G        +     
Sbjct: 312 PGGRLVALSFHSLEDRIIKRFLLGISMTERFNLSVRQQVMKTSQLGSGHENTEEVSMRRA 371

Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           P +++ I KKV+ P  +DV  N R RSAKLRA ++
Sbjct: 372 PLMWELIHKKVLSPQDQDVQDNPRGRSAKLRAAVK 406


>gi|254382600|ref|ZP_04997958.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Streptomyces sp. Mg1]
 gi|194341503|gb|EDX22469.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Streptomyces sp. Mg1]
          Length = 310

 Score =  338 bits (868), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 113/306 (36%), Positives = 174/306 (56%), Gaps = 10/306 (3%)

Query: 24  LLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETM 78
           +L++ + LL P    PG V++D T G GG+S +        ++I LDRD  A+    E +
Sbjct: 2   MLQRCLDLLAPALQKPGAVVVDCTLGLGGHSEALLTRFPEAHLIGLDRDKEALRLSGERL 61

Query: 79  RDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
             +  + +L  A ++ L + +       V G++FDLGVSSMQ+D  DRGF++ +  PLDM
Sbjct: 62  APFGGRVTLVHAIYADLAEVLDGLRIPAVQGILFDLGVSSMQLDEADRGFAYAQDAPLDM 121

Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM  + GISA++V+N     +L RIL   GEEKQA RI  A+V+ R+  PF  +  L  L
Sbjct: 122 RMDQTTGISAAEVLNTYAPGELVRILRQYGEEKQAKRIVSAVVREREKEPFSNSARLVEL 181

Query: 195 IQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           I+  +   +K    +PA R+FQALRI VN E+  L + + +A   +  GG + V+S+HSL
Sbjct: 182 IRDALPQAAKRTGGNPAKRTFQALRIEVNGELSGLERAIPAAVDRIAVGGRIAVLSYHSL 241

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           EDRLVK+ FA+ +         +    +    + +T+   +PT+E++A NRR+  A+ R 
Sbjct: 242 EDRLVKQVFAAGATSTAPPGLPVVPEKYQPKLKLLTRGAELPTEEEIAENRRAAPARFRG 301

Query: 314 GMRTVE 319
             R  E
Sbjct: 302 VERIRE 307


>gi|194246838|ref|YP_002004477.1| S-adenosyl-methyltransferase [Candidatus Phytoplasma mali]
 gi|262824840|sp|B3R0Q2|RSMH_PHYMT RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|193807195|emb|CAP18636.1| S-adenosyl-methyltransferase [Candidatus Phytoplasma mali]
          Length = 300

 Score =  338 bits (868), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 118/305 (38%), Positives = 174/305 (57%), Gaps = 14/305 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76
           +H+PVL ++V+  LN     + +DAT G GG+S    +      + A D+D FA+   ++
Sbjct: 4   NHIPVLPKEVLKYLNVKSSGIYVDATLGGGGHSELILEKLKKGFLYAFDQDIFAIKQSKK 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
              +   +  L  + F  L+  +  +GV   DG++FDLG+SS QID  +RGFS+  +  L
Sbjct: 64  LFAN-NHKIELIHSNFFFLKQELNKRGVFFVDGIIFDLGLSSFQIDDKERGFSYLSNEFL 122

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     ++A  ++N  + + L  I    G+EK +S IA  I+K+R   P  TT +L 
Sbjct: 123 DMRMDREQKLTAHYIINNYSFEKLRNIFFNFGQEKNSSLIAAEIIKKR---PLNTTFELV 179

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +      F+ N + H + + FQALRI VN E+E L + L      LK G  ++V+SFHS
Sbjct: 180 EI---ADKFNYNRKGHSSKKIFQALRIEVNKELELLQKTLHQCLSLLKEGSSIVVISFHS 236

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDRLVK FF + S   +  +  I SN    V + ITKKVV P+ E++AFN RSRSAKLR
Sbjct: 237 LEDRLVKNFFRANSIINLPTKLPIVSNFK-TVLKIITKKVVKPSLEEIAFNHRSRSAKLR 295

Query: 313 AGMRT 317
           A ++ 
Sbjct: 296 AAVKN 300


>gi|325294232|ref|YP_004280746.1| ribosomal RNA small subunit methyltransferase H [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325064680|gb|ADY72687.1| Ribosomal RNA small subunit methyltransferase H [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 296

 Score =  338 bits (868), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 118/308 (38%), Positives = 181/308 (58%), Gaps = 26/308 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQET 77
           H PVLL++ I LL     ++ +DAT G GG++ +  +      VIA+DRD  A+    + 
Sbjct: 7   HPPVLLKESIELLKAKDARIFVDATLGGGGHTEAILEANPENRVIAIDRDEEAIERAMKR 66

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +  + ++ S++ A FSQ+ + +  +G   V+GV+FDLGVS   +  G+RGF+  +  PLD
Sbjct: 67  LERFGDRISIYHANFSQIGEVLEAEGIKEVNGVLFDLGVSHFHL-RGNRGFTVWEEQPLD 125

Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM     ++A DVVN+ + K+L  I+   GEEK A +IA  IV+RR+  P +TT +L+ 
Sbjct: 126 MRMDRRQKLTARDVVNKLSEKELADIIFKYGEEKFARKIAREIVRRRKIKPIETTLELAK 185

Query: 194 LIQKTVYFS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           ++++ +        + HPA ++FQA+RIFVN E +E+ +G+  A   +   G ++V++FH
Sbjct: 186 IVEEVIPKKLWAGRKKHPAIKTFQAIRIFVNREFQEIEEGIPEAANHVACSGRIVVITFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDRLVK  F +  G                 F+ ITKK V PT+E++  N  SRSAKL
Sbjct: 246 SLEDRLVKNIFRNLEG-----------------FKVITKKPVEPTEEEIKKNPASRSAKL 288

Query: 312 RAGMRTVE 319
           RA  R  E
Sbjct: 289 RAIERVCE 296


>gi|225011606|ref|ZP_03702044.1| S-adenosyl-methyltransferase MraW [Flavobacteria bacterium
           MS024-2A]
 gi|225004109|gb|EEG42081.1| S-adenosyl-methyltransferase MraW [Flavobacteria bacterium
           MS024-2A]
          Length = 299

 Score =  338 bits (868), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 107/308 (34%), Positives = 157/308 (50%), Gaps = 17/308 (5%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSC 73
              H PVLL+  +  L+  P  + +DATFG GG+SR           ++  D+D  A++ 
Sbjct: 2   TQYHNPVLLQASLEGLHIRPNGIYVDATFGGGGHSRVILDRLGKEGRLLGFDQDVDALAN 61

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
             E       +F    A FS L  Y+       VDG++ D GVSS Q D  +RGFS +  
Sbjct: 62  NIE-----DSRFDFVAANFSHLTQYLKYHKIDKVDGILADFGVSSHQFDTQERGFSIRTD 116

Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM+ S  + A  V+N  +   L  +    GE K +  I+  IV+ R+     TT 
Sbjct: 117 ARLDMRMNQSQDLDAHKVINTYSEDKLRMLFFAYGELKNSKTISRTIVEAREECEIITTM 176

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           DL  L++  V     N+I    + FQALRI VN+E+E L   L  A + L  GG L+ +S
Sbjct: 177 DLIELVKPLVPKRIENKI--LAQLFQALRIEVNDELEALKSFLIQANEVLVQGGRLVCIS 234

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           +HSLEDRLVK++F + S      +    +   P   + I  K+++P+ ++V  N R+RSA
Sbjct: 235 YHSLEDRLVKRYFQTGSFDGELEKDFYGNPIKP--LKKI-GKLIIPSSDEVKENGRARSA 291

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 292 KLRIAEKI 299


>gi|118602334|ref|YP_903549.1| S-adenosyl-methyltransferase MraW [Candidatus Ruthia magnifica str.
           Cm (Calyptogena magnifica)]
 gi|262826332|sp|A1AVX1|RSMH_RUTMC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|118567273|gb|ABL02078.1| S-adenosyl-methyltransferase MraW [Candidatus Ruthia magnifica str.
           Cm (Calyptogena magnifica)]
          Length = 307

 Score =  338 bits (867), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 104/310 (33%), Positives = 171/310 (55%), Gaps = 16/310 (5%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCG 74
             H  V+L + I  LN     + +DATFG GG+++           +IA D+D  A+   
Sbjct: 4   NHHQSVMLNESIGALNIKTDGIYIDATFGRGGHAQGILNKLGEQGKLIAFDQDINAIEYA 63

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +   D   + +L  + FS + + +  +G    +DG++ DLGVSS Q+D   RGFSF+  
Sbjct: 64  HKNFTD--SRLTLIYSAFSNMLNIITQQGLMSKIDGILMDLGVSSPQLDNAQRGFSFKAD 121

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
           GPLDMRM+ + G+SA+  +N AN +++  ++   G+EK++  IA  I K +Q    +TT 
Sbjct: 122 GPLDMRMNQTTGMSATQWLNLANEEEIANVIYQFGDEKRSRHIATRIKKYQQKHTLETTL 181

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            L+ ++ K V   KN   HPATR+FQA+RIF+N E+++L   L  ++  L+  G L ++S
Sbjct: 182 ALAGIVSKVVKRQKN--KHPATRTFQAIRIFINQELKQLEDVLEQSKDILRKDGRLSIIS 239

Query: 250 FHSLEDRLVKKFFASRS--GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           FHS+EDR+VK F    S    +     +I         +++ K     ++ +++ N+R+R
Sbjct: 240 FHSIEDRIVKHFIQKNSRQKNLPKGLPIIDYKIEKTCLKNLGK--YFASKAEISRNKRAR 297

Query: 308 SAKLRAGMRT 317
           SA LR   + 
Sbjct: 298 SAILRVASKN 307


>gi|170057826|ref|XP_001864654.1| s-adenosyl-methyl transferase mraw [Culex quinquefasciatus]
 gi|167877164|gb|EDS40547.1| s-adenosyl-methyl transferase mraw [Culex quinquefasciatus]
          Length = 1479

 Score =  338 bits (867), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 133/336 (39%), Positives = 181/336 (53%), Gaps = 30/336 (8%)

Query: 13   IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70
            +      HVPV+  + I  L P   ++ +D TFGAGG+++   K   N  +I LDRDP A
Sbjct: 1144 MSTEAVRHVPVMAAEAIKFLKPQDSELFIDMTFGAGGHTKQILKAAPNAKIITLDRDPVA 1203

Query: 71   VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGF 125
                QE  + Y  Q       FS+L   + +  V     DG++FD G SSMQ D G+RGF
Sbjct: 1204 HELAQEMAKRYPGQIYPVLGRFSELPAKLKELNVNQRSIDGMIFDFGCSSMQFDEGERGF 1263

Query: 126  SFQKSGPLDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
            S  K+GPLDMRM         SA+DV+ + +  DL RIL + GEEK A RIA AIV+ R 
Sbjct: 1264 SISKNGPLDMRMDKDRCPDAPSAADVLARIDEMDLARILKVYGEEKFAKRIARAIVEARH 1323

Query: 182  S-APFQTTQDLSSLIQKTVYFSKN-----NRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
            S    +TT++L+ L+Q                HPAT++FQALRIFVNNE+ E+  G+  A
Sbjct: 1324 SIKKIETTKELAELVQTCCASEFRLDKLQRPSHPATKTFQALRIFVNNELNEINYGMILA 1383

Query: 236  EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-------------P 282
            +  LK GG +I ++FHSLED +VK+         MA +  +   +H              
Sbjct: 1384 QHYLKIGGKMITITFHSLEDTIVKRHVMGNVANDMANKLPLKYCSHTICHDQTVMDAALK 1443

Query: 283  AVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318
              +  +TK VVVP+  +V  N RSRSAKLRA +R  
Sbjct: 1444 PNWHQMTKHVVVPSDAEVEENPRSRSAKLRAVVRVE 1479


>gi|126332528|ref|XP_001380257.1| PREDICTED: similar to methyltransferase 5 domain containing 1,
           [Monodelphis domestica]
          Length = 442

 Score =  338 bits (867), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 136/353 (38%), Positives = 193/353 (54%), Gaps = 38/353 (10%)

Query: 2   ESKSCKTMSSAIHHTIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN 60
           + +   +  S  H T+   H+PV++ +VI  L P  G+ ILD TFG+GG+SR+  +   +
Sbjct: 89  KGQEIHSSQSENHETMKKLHIPVMVNEVINCLAPRQGQNILDMTFGSGGHSRAILQKELD 148

Query: 61  --VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGV 113
             +  LDRDP A +  Q+    Y +Q     + FSQ +  +   GV     DGV+ DLG 
Sbjct: 149 VTLYVLDRDPTAYAIAQQLSELYPKQIRALLSQFSQAEAMLMKAGVQPGTVDGVLLDLGC 208

Query: 114 SSMQIDCGDRGFSFQKSGPLDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQA 169
           SSMQ+D  +RGFSF+K GPLDMRM         +A+DVVN  + + L  IL   GEEK A
Sbjct: 209 SSMQLDTPERGFSFRKDGPLDMRMDGGRYPDMHTAADVVNALDQQALALILRTYGEEKYA 268

Query: 170 SRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSK--------NNRIHPATRSFQALRIFV 221
            +IA AIV+ R   P   TQ L+S++      +             H AT++FQALRIFV
Sbjct: 269 KKIASAIVQARSIYPITRTQQLASIVAGAFPTAALYERKDLLQRSTHIATKTFQALRIFV 328

Query: 222 NNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKF------------------FA 263
           NNE+ EL  GL++A+K L+ GG L+ +SFHSLEDR+VK+F                    
Sbjct: 329 NNELNELYVGLKTAQKFLRPGGRLVALSFHSLEDRIVKRFLHGIDVTEKLSPKKRQKIIQ 388

Query: 264 SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           ++S  +         ++ P  ++ I KKVV P  ++V  N R RSAKLRA ++
Sbjct: 389 AQSLCLNQENEEFFRSSSPLEWEMIYKKVVTPESQEVQDNPRGRSAKLRAAIK 441


>gi|331005086|ref|ZP_08328490.1| S-adenosyl-methyltransferase MraW [gamma proteobacterium IMCC1989]
 gi|330421141|gb|EGG95403.1| S-adenosyl-methyltransferase MraW [gamma proteobacterium IMCC1989]
          Length = 314

 Score =  338 bits (867), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 115/318 (36%), Positives = 174/318 (54%), Gaps = 12/318 (3%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALD 65
           MS ++      H  VLL + +  L        +D TFG GG+SR      S    ++A+D
Sbjct: 1   MSQSLEQLS--HQSVLLHESVDALITDVNGFYVDGTFGRGGHSREVLLRLSEDAQLMAVD 58

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCG 121
           +D  A++   +   D K +FS+   +FSQL  ++ +      V+G++ DLGVSS Q+D  
Sbjct: 59  KDEQAIAEADKQFSDEK-RFSIRHGSFSQLNQWLVEIEKLGKVNGILLDLGVSSPQLDEA 117

Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
            RGFSF + GPLDMRM+ + G +A++ +N A+ +D+ R+L   GEE+ + RIA AIV  R
Sbjct: 118 HRGFSFMQDGPLDMRMNRTKGETAAEWINSASQEDIARVLKEYGEERFSKRIARAIVDHR 177

Query: 181 QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           Q  PF TT +LS ++ +     +  + HPATR+FQA+RI +N+E+ +L   L  A  AL 
Sbjct: 178 QEQPFATTHELSKVVTEANPAWEKGK-HPATRAFQAIRIHINDELSDLDVILEQALAALA 236

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300
            GG L+V+SFHSLEDR VK+F   +         +   +           KV      ++
Sbjct: 237 VGGRLVVISFHSLEDRRVKRFIRQQVQGDRLPMGVPVRDEQLNKRLRSLGKVTKAGASEL 296

Query: 301 AFNRRSRSAKLRAGMRTV 318
           A N R+RSA +R   +  
Sbjct: 297 AHNPRARSAVMRVAEKIA 314


>gi|167838012|ref|ZP_02464871.1| S-adenosyl-methyltransferase MraW [Burkholderia thailandensis
           MSMB43]
          Length = 313

 Score =  338 bits (867), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 111/312 (35%), Positives = 174/312 (55%), Gaps = 19/312 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  V +D TFG GG+SR+          +IA D+DP A+   + 
Sbjct: 7   HRTVLLDEAVDALVTRPDGVYVDGTFGRGGHSRAVLARLSEAGRLIAFDKDPRAIETAKG 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +F +   +F+ ++  +  +GV    GV+ DLGVSS Q+D   RGFSF+ +GPL
Sbjct: 67  IA---DARFEIVHDSFAAMKGALDARGVARVSGVLLDLGVSSPQVDDPARGFSFRANGPL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS----APFQTT 188
           DMRM  + G SA++ + +A+V++LT ++   GEE+ A +IA AIV RR       P  +T
Sbjct: 124 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRLGPLDST 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ ++   V   +     PATR+FQA+RI VN E+ +L   L +A  +L+ GG L+V+
Sbjct: 184 GELAQIVGHVVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLEAALSSLEQGGRLVVI 242

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           SFHSLEDR+VK+F  + +      R +     +      + + +  + P+  +VA N R+
Sbjct: 243 SFHSLEDRIVKRFLQTHASAPAVDRRLPIRAVDLPSPPLKLLGR--MFPSDAEVAANPRA 300

Query: 307 RSAKLRAGMRTV 318
           RSA +R   R  
Sbjct: 301 RSAVMRIAERIA 312


>gi|86132600|ref|ZP_01051193.1| S-adenosyl-methyltransferase [Dokdonia donghaensis MED134]
 gi|85816842|gb|EAQ38027.1| S-adenosyl-methyltransferase [Dokdonia donghaensis MED134]
          Length = 298

 Score =  338 bits (867), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 102/305 (33%), Positives = 166/305 (54%), Gaps = 17/305 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H PVLL++ +  L+  P  V +D TFG GG+SR           +   D+DP A     +
Sbjct: 4   HNPVLLKETVDGLDIKPDGVYVDVTFGGGGHSREILSRLGENGKLYGFDQDPDAAQNVPD 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +F L    F  ++ ++   G   VDG++ D GVSS Q D  +RGFS +    L
Sbjct: 64  -----DSRFVLIPENFRFIKRFLRFHGHKKVDGILGDFGVSSHQFDVAERGFSTRFESDL 118

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+    +SA +VVN    +DL ++    GE + A ++A AIV  R +AP +T++ L 
Sbjct: 119 DMRMNQKDDLSAYNVVNDYAEEDLRQVFWQYGELRNAPKLASAIVVARGNAPIKTSEQLK 178

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            ++   +   + ++I    + +QA+RI VN EIE L + L   E+ L+ GG + ++S+HS
Sbjct: 179 KVLAAFLPKHREHKI--LAQIYQAIRIEVNQEIEVLKEFLLQTEQLLEPGGRISLISYHS 236

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDRLVK++  +   +    + M  +   P  F+ + + ++VP++E++  N R+RSAKLR
Sbjct: 237 LEDRLVKRYIRNGLFEGEPEKDMYGNFEVP--FKKVGR-LIVPSKEEIKSNNRARSAKLR 293

Query: 313 AGMRT 317
              + 
Sbjct: 294 IAAKV 298


>gi|107021630|ref|YP_619957.1| S-adenosyl-methyltransferase MraW [Burkholderia cenocepacia AU
           1054]
 gi|123245314|sp|Q1BZH1|RSMH_BURCA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|105891819|gb|ABF74984.1| methyltransferase [Burkholderia cenocepacia AU 1054]
          Length = 313

 Score =  338 bits (867), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 115/311 (36%), Positives = 175/311 (56%), Gaps = 19/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  V +D TFG GG+SR+          +IA D+DP A+   Q 
Sbjct: 7   HRTVLLDEAVESLVTRPDGVCVDGTFGRGGHSRAVLARLASAGRLIAFDKDPRAIETAQ- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +FS+   +F+ ++D +  +GV    GV+ DLGVSS Q+D   RGFSF+  GPL
Sbjct: 66  --GIEDARFSIVHDSFASMRDALAARGVEKVSGVLLDLGVSSPQVDDPARGFSFRADGPL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS----APFQTT 188
           DMRM  + G SA++ + +A+V++LT ++   GEE+ A +IA A+V RR       P  TT
Sbjct: 124 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDTT 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ ++   V   +     PATR+FQA+RI VN E+ +L   L +A   L+ GG L+V+
Sbjct: 184 GELAQIVGHVVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVI 242

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           SFHSLEDR+VK+F  + +      R +     +      + I++    P++ +VA N R+
Sbjct: 243 SFHSLEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPPLKIISR--QFPSEAEVAANPRA 300

Query: 307 RSAKLRAGMRT 317
           RSA +R   R 
Sbjct: 301 RSAVMRIAERV 311


>gi|301770125|ref|XP_002920478.1| PREDICTED: probable S-adenosyl-L-methionine-dependent
           methyltransferase METT5D1-like [Ailuropoda melanoleuca]
 gi|281337489|gb|EFB13073.1| hypothetical protein PANDA_009216 [Ailuropoda melanoleuca]
          Length = 407

 Score =  338 bits (867), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 132/335 (39%), Positives = 188/335 (56%), Gaps = 38/335 (11%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H+PV++++V+  L P  G++ LD TFG+GG++R+  +  S+  + ALDRDP A +  ++ 
Sbjct: 72  HIPVMVDEVVRCLAPQKGQIFLDMTFGSGGHTRAILQKESDITLYALDRDPTAYAIAEQL 131

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              Y +Q       FSQ +  +   GV     DGV+ DLG SSMQ+D  +RGFS +K GP
Sbjct: 132 SELYPKQIRAMLGQFSQAEALLMKAGVQPGTLDGVLLDLGCSSMQLDAPERGFSLRKDGP 191

Query: 133 LDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           LDMRM         +A+DVVN  + + L  IL   GEEK A +IA AIV+ R   P   T
Sbjct: 192 LDMRMDGGRYPDMPTAADVVNALDQQALASILRTYGEEKHAKKIASAIVQARSLYPISRT 251

Query: 189 QDLSSLIQKTVY----FSKN----NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           Q L+S++         F++        H AT++FQA RIFVNNE+ EL  GL++A+K L+
Sbjct: 252 QQLASIVAGAFPPSAVFARKDLLQRSTHIATKTFQAFRIFVNNELNELYTGLKTAQKFLR 311

Query: 241 AGGLLIVVSFHSLEDRLVKKFF-------------------ASRSGKVMAVRHMIPSNAH 281
            GG L+ +SFHSLEDR+VK+F                    AS+ G     +        
Sbjct: 312 PGGRLVALSFHSLEDRIVKRFLLGISMTERFNLSARQKVIQASQLGSGHENKEGGSIGRA 371

Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           P +++ I KKV+ P   DV  N R+RSAKLRA ++
Sbjct: 372 PLMWELIHKKVLTPEDRDVQDNPRARSAKLRAAIK 406


>gi|239931801|ref|ZP_04688754.1| S-adenosylmethionine-dependent methyltransferase [Streptomyces
           ghanaensis ATCC 14672]
          Length = 309

 Score =  338 bits (867), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 120/306 (39%), Positives = 179/306 (58%), Gaps = 10/306 (3%)

Query: 24  LLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETM 78
           +L++ + LL P    PG V++D T G GG+S +  +      ++ALDRD  A+    E +
Sbjct: 1   MLQRCLDLLAPALERPGAVVVDCTLGLGGHSEALLRRFPEARLVALDRDKEALRLSGERL 60

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
             + E+ +L  A + +L D +   GV    GV+FDLGVSSMQ+D  DRGF++ +  PLDM
Sbjct: 61  APFGERATLVHAVYDELPDVLARLGVPRVQGVLFDLGVSSMQLDEADRGFAYAQDAPLDM 120

Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM  + G+SA++V+N     +L RIL   GEEKQA RI  AIV+ R+  PF  +  L  L
Sbjct: 121 RMDQTAGVSAAEVLNTYPPGELVRILRAYGEEKQAKRIVAAIVREREKEPFTRSARLVEL 180

Query: 195 IQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           I+  +   +K    +PA R+FQALRI VN E+  L + + +A KAL   G + V+S+HSL
Sbjct: 181 IRDALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVKALDVDGRIAVLSYHSL 240

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           EDRLVK+ FA+ +         +    +    + +T+   +PT+E++A NRR+  A+LR 
Sbjct: 241 EDRLVKQVFAAGAATTAPPGLPVVPERYQPRLKLLTRGAELPTEEEIAENRRAAPARLRG 300

Query: 314 GMRTVE 319
             R  E
Sbjct: 301 AQRIRE 306


>gi|309812627|ref|ZP_07706371.1| S-adenosyl-methyltransferase MraW [Dermacoccus sp. Ellin185]
 gi|308433322|gb|EFP57210.1| S-adenosyl-methyltransferase MraW [Dermacoccus sp. Ellin185]
          Length = 323

 Score =  338 bits (867), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 116/309 (37%), Positives = 178/309 (57%), Gaps = 9/309 (2%)

Query: 20  HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           HVPV+L +++  L P     G + +DAT G GG++ +  +       I +DRD  A+   
Sbjct: 12  HVPVMLTEILDALAPSLERSGALYVDATLGMGGHTEAVLERFGEARAIGIDRDTEALRLA 71

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
            E +  + ++F    A  +++ D +P    D ++FDLGVSS+Q+D  DRGFS++   PLD
Sbjct: 72  GERLARFGDRFEGVHAVNTEVADVLPRP-ADAMLFDLGVSSLQLDELDRGFSYRADAPLD 130

Query: 135 MRMSCS--GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           MRM  +  G +A+DV+N A+  +L RIL   GEE+ A +IAHA+VK R+  P+ T+  L 
Sbjct: 131 MRMDQTSDGPTAADVLNTASQDELERILKTYGEERFARKIAHAVVKEREKQPWTTSGRLV 190

Query: 193 SLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +++  +   S+    HPA R+FQALRI VN+E+    Q + SA  +L  GG L V+SFH
Sbjct: 191 EMLRSVIPLASQRQSGHPAKRTFQALRIEVNDELRGWEQAVTSALDSLAVGGRLAVLSFH 250

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+ K+ FA+ S         +    H   F  +T+   VP+++++  N RS S +L
Sbjct: 251 SLEDRITKRAFATASASTAPPGLPVELPQHRPEFALVTRGAAVPSEDELESNPRSASVRL 310

Query: 312 RAGMRTVER 320
           R   RT  +
Sbjct: 311 RVIERTRAK 319


>gi|71894357|ref|YP_278465.1| S-adenosyl-methyltransferase [Mycoplasma synoviae 53]
 gi|88909204|sp|Q4A667|RSMH_MYCS5 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|71851145|gb|AAZ43754.1| S-adenosyl-methyltransferase [Mycoplasma synoviae 53]
          Length = 301

 Score =  338 bits (867), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 109/306 (35%), Positives = 169/306 (55%), Gaps = 15/306 (4%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQ 75
            +H+PVLL +V+  L      + +D T G GG+S+   K      +IA D+D FA+    
Sbjct: 3   NNHIPVLLNEVLDNLALKENGIYIDLTLGMGGHSKEILKRIPKGKLIAFDKDDFAIKNAS 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           +T+ +    F + ++ F   ++ + + G   VDG++ DLG+SS QID  +RGFS+ K+  
Sbjct: 63  KTLSEVANNFEIIKSDFKDFKEELSNLGIYKVDGILADLGISSPQIDNAERGFSYLKNSA 122

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S  +SA DVVN   V+ L  IL   GE K    IA  I++ R   P  TT +L
Sbjct: 123 LDMRMDQSQKLSAYDVVNLYPVEKLEYILKTYGEVKNYKYIASKIIEAR---PINTTLEL 179

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           ++LI+           +PA   FQA+RI VNNE++ + Q L S E  LK    L+++SFH
Sbjct: 180 ANLIKSVTPQKLLKLKNPAKNVFQAIRIEVNNELDSIHQMLSSVEDLLKVNASLLIISFH 239

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLED++VK +F   +   +  +  I  +   A     T++ + P+++++  N RS+SAKL
Sbjct: 240 SLEDKIVKNYFQELTKPKLPSKMPIQEDKFFA-----TRR-IYPSKQELNLNSRSKSAKL 293

Query: 312 RAGMRT 317
           R   + 
Sbjct: 294 RILTKI 299


>gi|300774439|ref|ZP_07084302.1| S-adenosyl-methyltransferase MraW [Chryseobacterium gleum ATCC
           35910]
 gi|300506254|gb|EFK37389.1| S-adenosyl-methyltransferase MraW [Chryseobacterium gleum ATCC
           35910]
          Length = 297

 Score =  338 bits (867), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 102/305 (33%), Positives = 160/305 (52%), Gaps = 17/305 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H PVLL++ +  L   P  + +D TFG GG+SR           + + D+D  A+    +
Sbjct: 3   HNPVLLKQSVDDLVTNPDGIYVDCTFGGGGHSREILSRLSDKGRLFSFDQDLDALKNTID 62

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +F+L    F  L++ +   GV   DG++ DLGVSS Q D  DRGFS + + PL
Sbjct: 63  -----DPRFTLVNQNFRFLENSLLMYGVSQVDGILADLGVSSHQFDEADRGFSTRSNAPL 117

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+    + A  V+N+   ++L  +    GE ++A ++A  IV  R++   +TT+DL 
Sbjct: 118 DMRMNVMQNLDAKRVINEYEEEELADLFYHYGELREARKLAREIVHHRKTKSIETTEDLK 177

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            L         N       + FQA+RI VN E+E L + L  A   LK  G L+V+S+HS
Sbjct: 178 KLFSYIPPHKVN---KFYAQLFQAIRIEVNQELEVLKEMLVQAYNVLKPEGRLVVISYHS 234

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDRLVK+F  +   +    R +     +   F+ +  K ++P  +++  N R+RSAK+R
Sbjct: 235 LEDRLVKRFLKNGMFEGEPERDI--YGNYKKAFELVKSKAIIPDDKEIEENSRARSAKMR 292

Query: 313 AGMRT 317
            G++ 
Sbjct: 293 TGIKV 297


>gi|241668885|ref|ZP_04756463.1| S-adenosylmethionine-dependent methyltransferase [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
 gi|254877417|ref|ZP_05250127.1| S-adenosyl-methyltransferase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254843438|gb|EET21852.1| S-adenosyl-methyltransferase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 305

 Score =  338 bits (867), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 118/309 (38%), Positives = 173/309 (55%), Gaps = 16/309 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76
            H  VLL++ IA LN  P  + +DATFG GG+S++         +IA D+D  A+     
Sbjct: 1   MHFSVLLQESIADLNINPEGIYIDATFGRGGHSKAILDKLTSGRLIAFDKDLDAIDYATH 60

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             ++  + F +  A+F+ + DY         VDG++ DLGVSS Q+D  +RGFSF   GP
Sbjct: 61  NFQN--DNFEIVHASFTYIYDYCLQHNLLGEVDGIIMDLGVSSPQLDNANRGFSFTHDGP 118

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTTQD 190
           LDMRM  S G++AS  + + +V +LT I  + GEE+ A +IA  I     ++    TT  
Sbjct: 119 LDMRMDISKGLTASQALEELSVDELTYIFKVYGEERFAKKIALRIKDYIAENGSITTTHQ 178

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ LI+ T+   K  + +PATR FQALRI+VN+E+++L   L S    +K GG +  +SF
Sbjct: 179 LAELIRATI--GKREKKNPATRCFQALRIYVNDELKDLEILLESILDVIKKGGRVAAISF 236

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH---MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           HSLEDR+VK+ F S             M+P +      + ITKK     Q++++ N RSR
Sbjct: 237 HSLEDRIVKQKFTSLINPKQETNRIAKMLPQDNSQVKMKWITKKA-KANQDELSQNVRSR 295

Query: 308 SAKLRAGMR 316
           SA LR   +
Sbjct: 296 SAILRVVEK 304


>gi|119331204|ref|NP_001073250.1| probable methyltransferase-like protein 15 [Bos taurus]
 gi|160012244|sp|A0JN95|MET15_BOVIN RecName: Full=Probable methyltransferase-like protein 15; AltName:
           Full=Methyltransferase 5 domain-containing protein 1
 gi|117306276|gb|AAI26576.1| Methyltransferase 5 domain containing 1 [Bos taurus]
 gi|296479746|gb|DAA21861.1| putative S-adenosyl-L-methionine-dependent methyltransferase
           METT5D1 [Bos taurus]
          Length = 407

 Score =  338 bits (867), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 129/335 (38%), Positives = 185/335 (55%), Gaps = 38/335 (11%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H+PV++++V+  L P  G+V LD TFG+GG++R+  +   +  + ALDRDP A +  ++ 
Sbjct: 72  HIPVMVDEVVRCLAPQKGQVFLDMTFGSGGHTRAILQKEPDITLYALDRDPTAYAIAEQL 131

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              Y +Q       FSQ +  +   GV     DGV+ DLG SSMQ+D  +RGFS +K GP
Sbjct: 132 SELYPKQIRAILGQFSQAEALLMKAGVQPGTLDGVLLDLGCSSMQLDTPERGFSLRKDGP 191

Query: 133 LDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           LDMRM         +A+DVVN  + + L  IL   GEEK A +IA AI++ R   P   T
Sbjct: 192 LDMRMDGDRYPDMPTAADVVNALDQQALASILRAYGEEKHAKKIASAIIQARGLYPITRT 251

Query: 189 QDLSSLIQKTVYFSK--------NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           Q L+S++      S             H AT++FQA RIFVNNE+ EL  GL++A+K L+
Sbjct: 252 QQLASIVAGAFPPSALYARKDLLQRPTHIATKTFQAFRIFVNNELNELYTGLKTAQKFLR 311

Query: 241 AGGLLIVVSFHSLEDRLVKKFF-------------------ASRSGKVMAVRHMIPSNAH 281
            GG L+ +SFHSLEDR++K+F                     S+       +  + +   
Sbjct: 312 PGGHLVALSFHSLEDRIIKRFLLGISMTERFNLSARQKVIQKSQLDSDQENKEGVSTGKA 371

Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           P +++ I KKV+ P  EDV  N R RSAKLRA ++
Sbjct: 372 PLMWKLIHKKVLTPEDEDVQDNPRGRSAKLRAAIK 406


>gi|260462082|ref|ZP_05810326.1| S-adenosyl-methyltransferase MraW [Mesorhizobium opportunistum
           WSM2075]
 gi|259031942|gb|EEW33209.1| S-adenosyl-methyltransferase MraW [Mesorhizobium opportunistum
           WSM2075]
          Length = 338

 Score =  337 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 138/287 (48%), Positives = 190/287 (66%), Gaps = 3/287 (1%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77
             H+PVLL +V+  L PA G +I+D TFGAGGY+++    G++V+A+DRDP A++ G++ 
Sbjct: 16  ARHIPVLLGEVLEALAPAEGDIIIDGTFGAGGYTKAILATGASVVAIDRDPDAIAAGRDL 75

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
                 +  L QA FS L ++     VDGVV D+GVSSMQ+D  +RGFSF+  GPLDMRM
Sbjct: 76  EAQSGGRLRLVQAPFSTLDEHAE--SVDGVVLDIGVSSMQLDQAERGFSFRNDGPLDMRM 133

Query: 138 SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK 197
           + +G+SA+DVVN     DL RI G LGEE+ A RIA  I  RR+  PF+ T +L+  I+ 
Sbjct: 134 AQAGLSAADVVNSFKPGDLARIFGFLGEERHAGRIARMIEARREKRPFERTLELADAIET 193

Query: 198 TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRL 257
            +  +  ++IHPATR FQALRIFVN+E+ ELA+ L +AE+ALK GG L+VV+FHSLEDR+
Sbjct: 194 HIGRAPKDKIHPATRVFQALRIFVNDELGELAKALFAAERALKPGGRLVVVTFHSLEDRI 253

Query: 258 VKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           VK+F A R+      RH+  + A  A F+      V P   ++A N 
Sbjct: 254 VKRFIADRADTASGSRHLPEAQARSATFRKDGGG-VTPGDAEIAANP 299


>gi|225850230|ref|YP_002730464.1| S-adenosyl-methyltransferase MraW [Persephonella marina EX-H1]
 gi|262824804|sp|C0QP68|RSMH_PERMH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|225646628|gb|ACO04814.1| S-adenosyl-methyltransferase MraW [Persephonella marina EX-H1]
          Length = 293

 Score =  337 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 116/306 (37%), Positives = 172/306 (56%), Gaps = 22/306 (7%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76
           +H PVL  +V++      G+ I+DAT G GG+S    K      +I +D+D +A+   +E
Sbjct: 3   EHYPVLHREVLSFFKNIKGRYIVDATVGGGGHSFLLLKNLPETFLIGIDKDDYALEKAEE 62

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  +K +F L + +F  +   V       V GV+FDLGVS+ Q+   +RGFSFQ+  PL
Sbjct: 63  KLSPFKGRFRLIKGSFKDIDTIVHSMDIKYVSGVLFDLGVSTFQLKT-ERGFSFQREEPL 121

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM      +A DVVN+    +L +I+   GEEK A RIA AIV+ R+    +TT++L+
Sbjct: 122 DMRMDRTQKKTAFDVVNRYTKIELEKIIKDYGEEKFARRIASAIVEARKKKRIETTKELA 181

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            ++        +  RIHPAT++FQA+RI VNNE+EE+ +G+      L+ GG++ V+SFH
Sbjct: 182 QIVYNVYPPPLRRGRIHPATKTFQAIRIEVNNELEEIKEGVNKGIDLLEKGGIIAVISFH 241

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+VK  +  R                    + +TKK + P  E++  N  SRSAKL
Sbjct: 242 SLEDRIVKNIYRERK--------------RLKDIEILTKKPITPGTEEIRENPPSRSAKL 287

Query: 312 RAGMRT 317
           R   R 
Sbjct: 288 RVAKRI 293


>gi|149371570|ref|ZP_01890986.1| S-adenosyl-methyltransferase MraW [unidentified eubacterium SCB49]
 gi|149355197|gb|EDM43757.1| S-adenosyl-methyltransferase MraW [unidentified eubacterium SCB49]
          Length = 298

 Score =  337 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 101/304 (33%), Positives = 154/304 (50%), Gaps = 17/304 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H PVLL   +  L   P  V +D TFG GG+SR   K       +IA D+D  A+    +
Sbjct: 4   HNPVLLHPTVDGLAIKPDGVYVDVTFGGGGHSREILKRLGPNGKLIAFDQDKDALDNVID 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +F L    F  L+ ++   G   VDG++ D GVSS Q D  +RGFS +    L
Sbjct: 64  -----DPRFVLVNENFRFLKRFLRFHGHKQVDGILADFGVSSHQFDVAERGFSTRFEAEL 118

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM   S  SA DVVN      L+ +L   GE + +  IA  I ++R++ P +T+  L 
Sbjct: 119 DMRMDQGSAFSAYDVVNNYEESQLSSVLFQYGELRASKGIARVICEKRKNGPIKTSDQLK 178

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
             + + +   + ++I    + +QA+RI VN E+E + + L+ + + L  GG L V+S+HS
Sbjct: 179 EAVARFLPKHREHKI--LAQIYQAIRIEVNQELEVIKEFLQQSIEVLPVGGRLSVISYHS 236

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDRLVK+F  +   +    + +      P        K ++P   ++  N R+RSAKLR
Sbjct: 237 LEDRLVKRFMRNGMFEGEPEKDVFGRAEVPMKP---VGKFIIPDAAEIKENNRARSAKLR 293

Query: 313 AGMR 316
              +
Sbjct: 294 IAKK 297


>gi|188994484|ref|YP_001928736.1| S-adenosyl-methyltransferase MraW [Porphyromonas gingivalis ATCC
           33277]
 gi|262824880|sp|B2RIE4|RSMH_PORG3 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|188594164|dbj|BAG33139.1| putative S-adenosyl-methyltransferase MraW [Porphyromonas
           gingivalis ATCC 33277]
          Length = 311

 Score =  337 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 101/308 (32%), Positives = 160/308 (51%), Gaps = 17/308 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQE 76
           H+PV+L + +  L   P    +D TFG GG+SR+          +   D+D  A     +
Sbjct: 11  HIPVMLGECLEGLRIDPDGCYVDVTFGGGGHSRAIVEKLSSKGRLYGFDQDADACRNVLQ 70

Query: 77  TMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                 E+F+   + F  L +++    + GVDG++ DLGVSS   D  +RGFSF+   PL
Sbjct: 71  -----DERFTFVPSNFRYLANFMDYYGEDGVDGILADLGVSSHHFDEEERGFSFRSESPL 125

Query: 134 -DMRMSCSGISASD-VVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS--APFQTTQ 189
            DMRM+      +  ++N+ +   L+ +    GE KQA R+A +IV  R+S     QT  
Sbjct: 126 LDMRMNARAGRNAAAILNEYDASSLSALFYHYGELKQARRLAASIVHYRESLSGGLQTVG 185

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            L   ++  +   +  +       FQALRI VN+E+  L Q L +A   L++GG L+V++
Sbjct: 186 QLLEAVRGLISPREEKK--QLACIFQALRIEVNDELGALQQMLEAALGCLRSGGRLVVMT 243

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           +HSLEDR+VK F    + K      +    A  + +Q IT+K +  + ++++ N RSRSA
Sbjct: 244 YHSLEDRMVKNFLRYGTVKAPDEDSLRLYGAPQSPWQQITRKPLTASTKELSDNPRSRSA 303

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 304 KLRIAEKI 311


>gi|119961336|ref|YP_947462.1| S-adenosyl-methyltransferase MraW [Arthrobacter aurescens TC1]
 gi|119948195|gb|ABM07106.1| putative S-adenosyl-methyltransferase mraW [Arthrobacter aurescens
           TC1]
          Length = 378

 Score =  337 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 122/328 (37%), Positives = 183/328 (55%), Gaps = 15/328 (4%)

Query: 11  SAIHHTIGDHVPVLLEKVIALLNP------APGK--VILDATFGAGGYSRSFCKMGS--N 60
            A   T   HVPVL ++ I LL P        G+  V +DAT G GG+S +  +     +
Sbjct: 51  DAAKPTSERHVPVLKDRCINLLAPGFEAARKRGERPVAIDATLGMGGHSEAMLQRFPDLH 110

Query: 61  VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQ 117
           ++ +DRD  A++     +  + ++  L  A + +++D + D GV    G++ DLGVSS+Q
Sbjct: 111 LVGIDRDEEALALAGARLEPFSDRTDLVHAVYDEIEDVLLDLGVPEVHGILMDLGVSSLQ 170

Query: 118 IDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
           +D  +RGF++    PLDMRM  S G +A+DVVN  +  +L RI+   GEEK A RIA+ I
Sbjct: 171 LDERERGFAYSYDAPLDMRMDTSRGQTAADVVNNYSEDELVRIIRKWGEEKFAGRIANRI 230

Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           V  R   PF TT +L   I+  V  +   +  HPA R+FQALRI VN E++ L + + +A
Sbjct: 231 VNARAEKPFATTGELVEQIRSVVPAAAAKSGGHPAKRTFQALRIEVNEELDVLERAVPAA 290

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295
             A   GG ++V+S+HSLED++VK  F + S     +   +    H    ++ITK   VP
Sbjct: 291 VAATAMGGRIVVMSYHSLEDKIVKSVFQAGSKSSAPLGFPVELEEHKPELKTITKGTEVP 350

Query: 296 TQEDVAFNRRSRSAKLRAGMRTVERSIE 323
           T  ++A N R+ SA+LRA  R  +R   
Sbjct: 351 TAAEIAENPRAASARLRAVERIKQRRDA 378


>gi|91786965|ref|YP_547917.1| S-adenosyl-methyltransferase MraW [Polaromonas sp. JS666]
 gi|123060224|sp|Q12EM3|RSMH_POLSJ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|91696190|gb|ABE43019.1| methyltransferase [Polaromonas sp. JS666]
          Length = 305

 Score =  337 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 119/308 (38%), Positives = 176/308 (57%), Gaps = 13/308 (4%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAV 71
                H  VLL + IA L+  P    +DATFG GG+SR           + A D+D  A+
Sbjct: 2   QDTWTHRTVLLNEAIAALHINPDGHYIDATFGRGGHSRLLLSQLSPQGRLTAFDKDLDAI 61

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +  Q        +FS+    F  L   +P     GV+ DLGVSS QID   RGFSF+  G
Sbjct: 62  AEAQTI---TDPRFSIRHEGFMHLGQ-LPAASAAGVLMDLGVSSPQIDNPVRGFSFRSEG 117

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA-PFQTTQ 189
           PLDMRM  + G S ++ +  A+++ +  ++   GEE+ A ++A AI +RRQ   P +TT 
Sbjct: 118 PLDMRMDTTRGQSVAEWLADASIETMAEVIREYGEERFAQQVAKAIDRRRQERGPLRTTA 177

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           +L+ ++   V   +  +  PATR+FQALRIF+N E+EEL Q L ++ K L+ GG L+V+S
Sbjct: 178 ELAEVVAGAVKTREPGK-DPATRTFQALRIFINAELEELQQALEASLKVLQPGGRLVVIS 236

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDR+VK+F A +S +V   R    +       +++ +  + P++E++A N RSRSA
Sbjct: 237 FHSLEDRIVKQFIAGQSREVF-DRRAPFAAPKAMRLKALGR--IKPSEEEIAANPRSRSA 293

Query: 310 KLRAGMRT 317
            +R   RT
Sbjct: 294 VMRVAERT 301


>gi|221202506|ref|ZP_03575536.1| S-adenosyl-methyltransferase MraW [Burkholderia multivorans CGD2M]
 gi|221208172|ref|ZP_03581177.1| S-adenosyl-methyltransferase MraW [Burkholderia multivorans CGD2]
 gi|221172075|gb|EEE04517.1| S-adenosyl-methyltransferase MraW [Burkholderia multivorans CGD2]
 gi|221177601|gb|EEE10018.1| S-adenosyl-methyltransferase MraW [Burkholderia multivorans CGD2M]
          Length = 313

 Score =  337 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 110/311 (35%), Positives = 172/311 (55%), Gaps = 19/311 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  + +D TFG GG+SR+          +IA D+DP A+   Q 
Sbjct: 7   HRTVLLDEAVESLVTRPDGIYVDGTFGRGGHSRAVLARLGPAGRLIAFDKDPRAIETAQA 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +FS+   +F+ ++  +  +G   V GV+ DLGVSS Q+D   RGFSF+  GPL
Sbjct: 67  MA---DARFSIVHDSFASMRGALAARGIEKVSGVLLDLGVSSPQVDDPARGFSFRADGPL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS----APFQTT 188
           DMRM  + G SA++ + +A++++LT ++   GEE+ A +IA A+V RR       P  +T
Sbjct: 124 DMRMDPTRGESAAEWLARASLQELTEVIRDYGEERFAFQIAKALVARRAESDRLGPLDST 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ ++   V   +     PATR+FQA+RI VN E+ +L   L +A   L+ GG L+V+
Sbjct: 184 GELAQIVGHVVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLDAALSLLEQGGRLVVI 242

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           SFHSLEDR+VK+F  + +      R +     +      + I +    P++ +V  N R+
Sbjct: 243 SFHSLEDRIVKRFMQAHASAPAVDRRLPIRAVDLPSPPLKIIGR--QFPSEAEVVANPRA 300

Query: 307 RSAKLRAGMRT 317
           RSA +R   R 
Sbjct: 301 RSAVMRIAERV 311


>gi|121606314|ref|YP_983643.1| S-adenosyl-methyltransferase MraW [Polaromonas naphthalenivorans
           CJ2]
 gi|262824843|sp|A1VSU4|RSMH_POLNA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|120595283|gb|ABM38722.1| S-adenosyl-methyltransferase MraW [Polaromonas naphthalenivorans
           CJ2]
          Length = 306

 Score =  337 bits (865), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 127/307 (41%), Positives = 176/307 (57%), Gaps = 13/307 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQE 76
           H  VLL + I  L   P    +DATFG GG+SR           V A D+D  A++  Q 
Sbjct: 8   HRTVLLNEAITALQVNPDGHYIDATFGRGGHSRLLLSQLSALGRVTAFDKDLDAIAEAQS 67

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
                  +FS+    F  L   +P   V GV+ DLGVSS QID  +RGFSF+  GPLDMR
Sbjct: 68  I---DDPRFSIRHQGFMHLDQ-MPQASVAGVLMDLGVSSPQIDNPERGFSFRNEGPLDMR 123

Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQTTQDLSSL 194
           M  + G S ++ +  A+++ +T ++   GEE+ A  +A AI +RRQ   P QTT +L+ +
Sbjct: 124 MDTTRGQSVAEWLQDASIEAMTEVIRDYGEERFAGLVARAIDRRRQEHGPLQTTAELADV 183

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           +   V   +  +  PATR+FQALRIF+N E+EEL Q L+++ K L+ GG L+V+SFHSLE
Sbjct: 184 VASAVKTREPGK-DPATRTFQALRIFINAELEELQQALQASLKVLQPGGRLVVISFHSLE 242

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           DR+VK+F A+ S +V   R      A P V Q         ++E+VA N RSRSA +R  
Sbjct: 243 DRIVKQFIAAHSREVYDRRAPF---AAPKVMQLKALGRTKASEEEVAGNPRSRSAVMRVA 299

Query: 315 MRTVERS 321
            RT E +
Sbjct: 300 ERTGEAA 306


>gi|165377209|ref|NP_001107000.1| probable methyltransferase-like protein 15 isoform 1 [Homo sapiens]
 gi|160012249|sp|A6NJ78|MET15_HUMAN RecName: Full=Probable methyltransferase-like protein 15; AltName:
           Full=Methyltransferase 5 domain-containing protein 1
 gi|119588672|gb|EAW68266.1| methyltransferase 5 domain containing 1, isoform CRA_a [Homo
           sapiens]
          Length = 407

 Score =  337 bits (865), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 131/335 (39%), Positives = 186/335 (55%), Gaps = 38/335 (11%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H+PV++++V+  L+P  G++ LD TFG+GG++++  +  S+  + ALDRDP A +  +  
Sbjct: 72  HIPVMVDEVVHCLSPQKGQIFLDMTFGSGGHTKAILQKESDIVLYALDRDPTAYALAEHL 131

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              Y +Q       FSQ +  +   GV     DGV+ DLG SSMQ+D  +RGFS +K GP
Sbjct: 132 SELYPKQIRAMLGQFSQAEALLMKAGVQPGTFDGVLMDLGCSSMQLDTPERGFSLRKDGP 191

Query: 133 LDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           LDMRM         +A+DVVN  + + L  IL   GEEK A +IA AIV+ R   P   T
Sbjct: 192 LDMRMDGGRYPDMPTAADVVNALDQQALASILRTYGEEKHAKKIASAIVQARSIYPITRT 251

Query: 189 QDLSSLIQKTVYFSK--------NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           Q L+S++      S             H AT++FQALRIFVNNE+ EL  GL++A+K L+
Sbjct: 252 QQLASIVAGAFPPSAIYTRKDLLQRSTHIATKTFQALRIFVNNELNELYTGLKTAQKFLR 311

Query: 241 AGGLLIVVSFHSLEDRLVKKFF-------------------ASRSGKVMAVRHMIPSNAH 281
            GG L+ +SFHSLEDR+VK+F                     S+ G        +     
Sbjct: 312 PGGRLVALSFHSLEDRIVKRFLLGISMTERFNLSVRQQVMKTSQLGSDHENTEEVSMRRA 371

Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           P +++ I KKV+ P  +DV  N R RSAKLRA ++
Sbjct: 372 PLMWELIHKKVLSPQDQDVQDNPRGRSAKLRAAIK 406


>gi|223937428|ref|ZP_03629333.1| S-adenosyl-methyltransferase MraW [bacterium Ellin514]
 gi|223893979|gb|EEF60435.1| S-adenosyl-methyltransferase MraW [bacterium Ellin514]
          Length = 300

 Score =  337 bits (865), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 109/301 (36%), Positives = 165/301 (54%), Gaps = 8/301 (2%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRD 80
           +L +V+A L    G    D T G  G++ +          +   DRD  AV   Q  + +
Sbjct: 1   MLAEVLAALKVKSGGKYADGTLGGAGHATAILAASSPNGWLFGCDRDGVAVEAAQARLAE 60

Query: 81  YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC- 139
           +  +F + +  +++L + +  +  DGV+ DLGVSS Q+D  +RGFSFQ+ GPLDMRM   
Sbjct: 61  FAGRFEISRGNYAELFETLEPESFDGVLLDLGVSSPQLDVAERGFSFQQEGPLDMRMDKR 120

Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199
             ++A+D++N A+ ++L  I   LG+E Q+ R A AI   RQ  PF+TT  L+ LI++  
Sbjct: 121 QQLTAADLLNHASAEELAEIFWKLGDEPQSRRFARAIEHDRQQRPFETTGQLAGLIERLA 180

Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259
                 + HPATR FQALR+ VN+E+  L +GL  A + LK GG L V++FHSLEDR VK
Sbjct: 181 P-RHGKKAHPATRVFQALRMAVNDELGSLERGLTGAVRILKPGGRLAVITFHSLEDRKVK 239

Query: 260 KFFASRSGKVMAVRHMIPSNAHPAV---FQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           +F   +S        +             + + +K V+P + +   N RSRSA+LR   +
Sbjct: 240 EFGRQKSRDYTFEGEVDVPELRKPRTPELKWVQRKAVLPGEAEQKENPRSRSAQLRIMEK 299

Query: 317 T 317
            
Sbjct: 300 I 300


>gi|167740320|ref|ZP_02413094.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 14]
 gi|226199616|ref|ZP_03795172.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei
           Pakistan 9]
 gi|225928362|gb|EEH24393.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei
           Pakistan 9]
          Length = 313

 Score =  337 bits (865), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 111/312 (35%), Positives = 173/312 (55%), Gaps = 19/312 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  V +D TFG GG+SR+          +IA D+DP A+   + 
Sbjct: 7   HRTVLLDEAVDALVTRPDGVYVDGTFGRGGHSRAVLARLGYAGRLIAFDKDPRAIETAES 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +F +   +F+ ++  +  +G   V GV+ DLGVSS Q+D   RGFSF+ +GPL
Sbjct: 67  I---EDARFEIVHDSFAAMKGALDARGIGRVSGVLLDLGVSSPQVDDPARGFSFRANGPL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS----APFQTT 188
           DMRM  + G SA++ + +A+V++LT ++   GEE+ A +IA AIV RR       P  +T
Sbjct: 124 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRLGPLDST 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ ++   V   +     PATR+FQA+RI VN E+ +L   L +A   L+ GG L+V+
Sbjct: 184 GELAQIVGHVVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLEAALSLLEQGGRLVVI 242

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           SFHSLEDR+VK+F  + +      R +    ++      + + +  + P   +VA N R+
Sbjct: 243 SFHSLEDRIVKRFLQAHASAPAVDRRLPIRAADLPSPPLKLLGR--MFPNDAEVAANPRA 300

Query: 307 RSAKLRAGMRTV 318
           RSA +R   R  
Sbjct: 301 RSAVMRIAERVA 312


>gi|84495974|ref|ZP_00994828.1| putative S-adenosylmethionine-dependent methyltransferase
           [Janibacter sp. HTCC2649]
 gi|84382742|gb|EAP98623.1| putative S-adenosylmethionine-dependent methyltransferase
           [Janibacter sp. HTCC2649]
          Length = 350

 Score =  337 bits (865), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 114/309 (36%), Positives = 176/309 (56%), Gaps = 10/309 (3%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCG 74
           HVPVL ++++ LL PA   PG V++D T G GG++ +F +      VI +DRD  A++  
Sbjct: 35  HVPVLRDRIVELLAPALTEPGSVLVDGTLGMGGHAEAFLEACPEATVIGIDRDEEALALA 94

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            E +  + ++F    A + ++ D V D G   V  V+FDLGVSS+Q+D  DRGF++ +  
Sbjct: 95  GERLARFGDRFRGVHAVYDEIGDVVKDLGLRDVQAVLFDLGVSSLQLDEADRGFAYAQDA 154

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM   SGI+A++V+N     DL RIL   GEE+ A RI  ++V+ R+  PF  +  
Sbjct: 155 PLDMRMDQGSGITAAEVLNTYAPADLLRILRDFGEERFAKRIVSSVVRERELEPFTRSAR 214

Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  L++  V  + +    HPA R+FQALRI VN+E+    + +  +   L  GG + V+S
Sbjct: 215 LVELLRAAVPAASQRTGGHPAKRTFQALRIEVNDELGAWQRAVLGSIDVLAVGGRIAVLS 274

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           +HSLEDR+ K+   + +         +    H A  + +T+    P++ + + N RS SA
Sbjct: 275 YHSLEDRITKRALVAGATSSTPPGIPVELPEHAAYLRLLTRGAEEPSESEQSTNPRSASA 334

Query: 310 KLRAGMRTV 318
           +LR   RT 
Sbjct: 335 RLRVAERTR 343


>gi|288919045|ref|ZP_06413386.1| S-adenosyl-methyltransferase MraW [Frankia sp. EUN1f]
 gi|288349585|gb|EFC83821.1| S-adenosyl-methyltransferase MraW [Frankia sp. EUN1f]
          Length = 327

 Score =  337 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 121/313 (38%), Positives = 180/313 (57%), Gaps = 10/313 (3%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCG 74
           H PVL E+V+ LL PA   PG +++D T G GG+S +  +      +I LDRDP A++  
Sbjct: 5   HTPVLTERVVELLTPAMQAPGAIVVDTTVGLGGHSLALLEAFPRARLIGLDRDPRALAYS 64

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +  + D   +  L    + QL D +   GV   +G++FDLGVSSMQ+D  +RGF++ +  
Sbjct: 65  RHRLADLGTRVDLVHMVYDQLPDALSGLGVAEVNGILFDLGVSSMQLDMDERGFAYSRDA 124

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM    G +A+DV+N  +V  LTRIL   GEE+ A RIA A+V  RQ+APF T+  
Sbjct: 125 PLDMRMDQERGPTAADVLNTYDVDSLTRILRNYGEERFARRIAQAVVSARQTAPFTTSAR 184

Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  LI+  +  + +    +PA R+FQALRI VN E++ L + L +A  AL  GG L+V+S
Sbjct: 185 LVDLIRDAIPAAARRTGGNPAKRTFQALRIEVNTELDVLERALPAAFDALAVGGRLVVLS 244

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           +HSLEDRLVK+    R+   +     +  +      + +T+     + +++  N R+ S 
Sbjct: 245 YHSLEDRLVKRSLGPRAVPAVPPDMPVIPDEARPTLRWLTRGAEPASDQEIERNARAGSV 304

Query: 310 KLRAGMRTVERSI 322
           +LRA  R      
Sbjct: 305 RLRAVERVAAEPG 317


>gi|300864772|ref|ZP_07109623.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Oscillatoria sp. PCC 6506]
 gi|300337241|emb|CBN54771.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Oscillatoria sp. PCC 6506]
          Length = 306

 Score =  337 bits (864), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 112/307 (36%), Positives = 164/307 (53%), Gaps = 30/307 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           H+PVL  ++I  L    G   LDAT G GG++R       +V  +A+D+D  A++  ++ 
Sbjct: 22  HIPVLGPQLIEGLAVRAGGHYLDATVGGGGHTRLILAAAPDVTIVAIDQDLDAIAFCKQQ 81

Query: 78  MRDY----KEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           + ++      +   +   F+       +   DG++ DLGVSS Q+D   RGFSF+    L
Sbjct: 82  LAEFLAPNSARIQFWHGNFASYP--AKESTFDGIIADLGVSSAQLDAPGRGFSFRHHANL 139

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+    ++A+++VN      L  I    GEE+ + RIA  IV  R   PFQTT +L+
Sbjct: 140 DMRMNQQQSLTAAEIVNHWEEVKLADIFYTYGEERLSRRIARRIVGDR---PFQTTTELA 196

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             I + V    +  RIHPATR+FQALRI VN+E+  +   L+ A + LK GG + ++SFH
Sbjct: 197 EAIARCVPPKYRYGRIHPATRTFQALRIAVNSELTAVETFLKQAPQWLKPGGRMGIISFH 256

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDRL K      S                 + + +TKK + P  E+VA N R+RSAKL
Sbjct: 257 SLEDRLAKHELKGSS-----------------LLRVLTKKPIQPATEEVAKNPRARSAKL 299

Query: 312 RAGMRTV 318
           R   R +
Sbjct: 300 RLAERLI 306


>gi|295135641|ref|YP_003586317.1| S-adenosyl-methyltransferase MraW [Zunongwangia profunda SM-A87]
 gi|294983656|gb|ADF54121.1| S-adenosyl-methyltransferase MraW [Zunongwangia profunda SM-A87]
          Length = 298

 Score =  337 bits (864), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 101/304 (33%), Positives = 168/304 (55%), Gaps = 17/304 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H PVLL++ +  LN  P  V +D TFG GG+SR   K       + A D+D  A+    E
Sbjct: 4   HNPVLLKESVDGLNIKPDGVYVDVTFGGGGHSREILKRLGEHGKLFAFDQDTDALQNKIE 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +F+L    F  L+ ++   GV   DG++ D GVSS Q +  +RGFS + +  L
Sbjct: 64  -----DPRFTLINENFRFLKRFLRFYGVKKVDGILGDFGVSSHQFNEAERGFSTRFNAKL 118

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  S  +SA  V+N+ + + L  +     + K A ++A  IV  R++ P + ++DL+
Sbjct: 119 DMRMDQSNSLSAYQVINEYDEEQLKSLFYQYADLKNAPKLARIIVSERKNKPIENSEDLN 178

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            L++  ++  K N+I    + +QA+RI VN EIE L + L   E  ++  G + ++S+HS
Sbjct: 179 ELLKPHLFKGKENKI--LAQIYQAIRIEVNQEIEVLKEFLLQTEDLVEKNGRISLISYHS 236

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDRLVK++  S   +    +    + + P  F+ +   ++VP++++++ N R+RSAKLR
Sbjct: 237 LEDRLVKRYIRSGLFEGEPEKDFYGNISVP--FKKV-GGLIVPSKQEISENNRARSAKLR 293

Query: 313 AGMR 316
              +
Sbjct: 294 IAKK 297


>gi|228472692|ref|ZP_04057452.1| S-adenosyl-methyltransferase MraW [Capnocytophaga gingivalis ATCC
           33624]
 gi|228276105|gb|EEK14861.1| S-adenosyl-methyltransferase MraW [Capnocytophaga gingivalis ATCC
           33624]
          Length = 305

 Score =  337 bits (864), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 110/306 (35%), Positives = 168/306 (54%), Gaps = 17/306 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H+PVLL++ I  L+  P    +D TFG GG+SR+  +       + A D+DP A +    
Sbjct: 7   HIPVLLQECIEGLSIDPAGTYVDVTFGGGGHSRAILERLSPQGRLFAFDQDPQAQANAIA 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                 ++F+L    F  ++ ++   GV    GV+ D GVSS Q D  +RGFS +  G L
Sbjct: 67  -----DDRFTLIGQNFRHIKRFLRFYGVKEVSGVLGDFGVSSHQFDTAERGFSIRMEGEL 121

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+    +SA +VVN  + ++L+ I    GE  Q+ ++A AIV+RR++AP  TT DL 
Sbjct: 122 DMRMNPEQPLSAKEVVNGYSQEELSEIFFRYGELSQSRKLAQAIVQRRETAPIATTADLK 181

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            ++QK  YF KN       + +QA+RI VN E+  L + L      +K  G + ++S+HS
Sbjct: 182 EVVQK--YFPKNQENKHLAQLYQAIRIEVNQELSALEELLLQLPDIVKPMGRIALISYHS 239

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDRL+K+F           +    +   P  F+ +  K ++PT E++A N R+RSAKLR
Sbjct: 240 LEDRLIKRFIRDGQFSGEPEKDFYGNIQVP--FRKV-GKPILPTAEEIARNNRARSAKLR 296

Query: 313 AGMRTV 318
              R +
Sbjct: 297 VAERVL 302


>gi|294056587|ref|YP_003550245.1| S-adenosyl-methyltransferase MraW [Coraliomargarita akajimensis DSM
           45221]
 gi|293615920|gb|ADE56075.1| S-adenosyl-methyltransferase MraW [Coraliomargarita akajimensis DSM
           45221]
          Length = 318

 Score =  337 bits (864), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 120/306 (39%), Positives = 184/306 (60%), Gaps = 6/306 (1%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73
             G HVPVLL + + LL+P  G  +LD TFG GG++R+      G  V+ALDRDP AV  
Sbjct: 13  NYGGHVPVLLRETLELLSPRAGAKLLDGTFGGGGHTRALLGAAEGVTVVALDRDPEAVER 72

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             E   ++ ++F L    F  L D + + G DG++FD G+SS Q+D  +RGFSF++  P+
Sbjct: 73  AAEVEAEFGQRFRLVSMNFGDLCD-LEESGFDGILFDFGLSSFQLDTAERGFSFREDAPV 131

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+ + GISA++ +  A+ + L R +   GEEK+  ++  +I+  R +   Q T  LS
Sbjct: 132 DMRMNPNAGISAAEFLETADEEALVRAVRNYGEEKRWRKVVQSILSARGTGRLQRTSSLS 191

Query: 193 SLIQKTVYFSKNNR--IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
            LI   V      R  IHPATRSFQ +R+ VN+E+  + +GL +A + L++GG L  +SF
Sbjct: 192 ELIADAVGPGPRGRKTIHPATRSFQGIRVEVNDELNAIERGLPAAFERLQSGGTLAAISF 251

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDR+VK+F    +G+          +    + + I+ + +VP ++++A N RSRSA+
Sbjct: 252 HSLEDRIVKRFCRRMAGRPEHAGDSRTQDERQVLGKMISTRPIVPAEDEIAINPRSRSAR 311

Query: 311 LRAGMR 316
           +RA  +
Sbjct: 312 MRAIRK 317


>gi|126454576|ref|YP_001067794.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 1106a]
 gi|134280340|ref|ZP_01767051.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 305]
 gi|167847424|ref|ZP_02472932.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei B7210]
 gi|167896013|ref|ZP_02483415.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 7894]
 gi|167904399|ref|ZP_02491604.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei NCTC
           13177]
 gi|167920627|ref|ZP_02507718.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei
           BCC215]
 gi|242314397|ref|ZP_04813413.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 1106b]
 gi|254180538|ref|ZP_04887136.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 1655]
 gi|254199129|ref|ZP_04905544.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei S13]
 gi|263446924|sp|A3NZM3|RSMH_BURP0 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|126228218|gb|ABN91758.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 1106a]
 gi|134248347|gb|EBA48430.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 305]
 gi|169656959|gb|EDS88356.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei S13]
 gi|184211077|gb|EDU08120.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 1655]
 gi|242137636|gb|EES24038.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 1106b]
          Length = 313

 Score =  337 bits (864), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 111/312 (35%), Positives = 173/312 (55%), Gaps = 19/312 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  V +D TFG GG+SR+          +IA D+DP A+   + 
Sbjct: 7   HRTVLLDEAVDALVTRPDGVYVDGTFGRGGHSRAVLARLGDAGRLIAFDKDPRAIETAES 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +F +   +F+ ++  +  +GV    GV+ DLGVSS Q+D   RGFSF+ +GPL
Sbjct: 67  I---EDARFEIVHDSFAAMKGALDARGVGRVSGVLLDLGVSSPQVDDPARGFSFRANGPL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS----APFQTT 188
           DMRM  + G SA++ + +A+V++LT ++   GEE+ A +IA AIV RR       P  +T
Sbjct: 124 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRLGPLDST 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ ++   V   +     PATR+FQA+RI VN E+ +L   L +A   L+ GG L+V+
Sbjct: 184 GELAQIVGHVVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLEAALSLLEQGGRLVVI 242

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           SFHSLEDR+VK+F  + +      R +    ++      + + +  + P   +VA N R+
Sbjct: 243 SFHSLEDRIVKRFLQAHASAPAVDRRLPIRAADLPSPPLKLLGR--MFPNDAEVAANPRA 300

Query: 307 RSAKLRAGMRTV 318
           RSA +R   R  
Sbjct: 301 RSAVMRIAERVA 312


>gi|254391587|ref|ZP_05006786.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Streptomyces clavuligerus ATCC 27064]
 gi|294812140|ref|ZP_06770783.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Streptomyces clavuligerus ATCC 27064]
 gi|197705273|gb|EDY51085.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Streptomyces clavuligerus ATCC 27064]
 gi|294324739|gb|EFG06382.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Streptomyces clavuligerus ATCC 27064]
          Length = 318

 Score =  337 bits (864), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 127/310 (40%), Positives = 182/310 (58%), Gaps = 10/310 (3%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           HVPV+L++ + LL PA   PG V++D T G GG+S +         +IALDRDP A+   
Sbjct: 6   HVPVMLQRCLDLLAPALESPGAVVVDCTLGLGGHSEALLSRFPGVRLIALDRDPEALRLS 65

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            E +  Y E+ +L  A + +L   +   GV    GV+FDLGVSSMQ+D  DRGF++ +  
Sbjct: 66  AERLAPYGERATLVHAVYDELPAVLARLGVPRVQGVLFDLGVSSMQLDEADRGFAYAQDA 125

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + G+SA++V+N     +L RIL   GEEKQA RI  AIV+ R + PF T+  
Sbjct: 126 PLDMRMDQTTGMSAAEVLNTYPPGELVRILRAYGEEKQAKRIVSAIVRERVNEPFSTSAR 185

Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  LI+  +   +K    +PA R+FQALRI VN E+  L + + +A  AL   G + V+S
Sbjct: 186 LVELIRDALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAVPAAVAALAVEGRIAVLS 245

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           +HSLEDRLVK+ FA+ +         +    +    + +T+   +PT ++VA NRR+  A
Sbjct: 246 YHSLEDRLVKQVFAAGAATTAPPGLPVVPEEYQPRLRLLTRGAELPTDDEVAENRRAAPA 305

Query: 310 KLRAGMRTVE 319
           +LR   R  E
Sbjct: 306 RLRGAQRIRE 315


>gi|263447893|sp|A1R5F0|RSMH_ARTAT RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 332

 Score =  337 bits (864), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 122/328 (37%), Positives = 183/328 (55%), Gaps = 15/328 (4%)

Query: 11  SAIHHTIGDHVPVLLEKVIALLNP------APGK--VILDATFGAGGYSRSFCKMGS--N 60
            A   T   HVPVL ++ I LL P        G+  V +DAT G GG+S +  +     +
Sbjct: 5   DAAKPTSERHVPVLKDRCINLLAPGFEAARKRGERPVAIDATLGMGGHSEAMLQRFPDLH 64

Query: 61  VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQ 117
           ++ +DRD  A++     +  + ++  L  A + +++D + D GV    G++ DLGVSS+Q
Sbjct: 65  LVGIDRDEEALALAGARLEPFSDRTDLVHAVYDEIEDVLLDLGVPEVHGILMDLGVSSLQ 124

Query: 118 IDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
           +D  +RGF++    PLDMRM  S G +A+DVVN  +  +L RI+   GEEK A RIA+ I
Sbjct: 125 LDERERGFAYSYDAPLDMRMDTSRGQTAADVVNNYSEDELVRIIRKWGEEKFAGRIANRI 184

Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           V  R   PF TT +L   I+  V  +   +  HPA R+FQALRI VN E++ L + + +A
Sbjct: 185 VNARAEKPFATTGELVEQIRSVVPAAAAKSGGHPAKRTFQALRIEVNEELDVLERAVPAA 244

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295
             A   GG ++V+S+HSLED++VK  F + S     +   +    H    ++ITK   VP
Sbjct: 245 VAATAMGGRIVVMSYHSLEDKIVKSVFQAGSKSSAPLGFPVELEEHKPELKTITKGTEVP 304

Query: 296 TQEDVAFNRRSRSAKLRAGMRTVERSIE 323
           T  ++A N R+ SA+LRA  R  +R   
Sbjct: 305 TAAEIAENPRAASARLRAVERIKQRRDA 332


>gi|163794519|ref|ZP_02188490.1| S-adenosyl-methyltransferase mraW [alpha proteobacterium BAL199]
 gi|159180243|gb|EDP64766.1| S-adenosyl-methyltransferase mraW [alpha proteobacterium BAL199]
          Length = 326

 Score =  337 bits (864), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 121/288 (42%), Positives = 166/288 (57%), Gaps = 10/288 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQETM 78
           H+PV+LE V+  L P  G   +D TFG GGY+R+        V A+DRDP A+       
Sbjct: 8   HIPVMLEPVVEALAPRDGGRYVDGTFGVGGYTRALLTAANCTVYAIDRDPEAIRRAGILA 67

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           +++  +    +  F  +   V + G   VDG+  DLGVSS QID  +RGFSF+  GPLDM
Sbjct: 68  QEFGGRLIAIEGRFGAMDQLVANAGAAQVDGIALDLGVSSPQIDDAERGFSFRFDGPLDM 127

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RM  +G SA+DVVN A   +L  I+  LGEE+ A R+A A+V  R + P   T +L++++
Sbjct: 128 RMEKAGPSAADVVNGATEAELADIVFYLGEERYARRVARALVAARLNGPITRTGELAAIV 187

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           ++ V  SK+  I  ATR+FQALRI VN E++EL  GL +AE+ L  GG L VVSFHSLED
Sbjct: 188 RRVVPSSKSGGIDSATRTFQALRIHVNRELDELDHGLEAAERLLSPGGRLAVVSFHSLED 247

Query: 256 RLVKKFFASRSGKVMAVRHMI------PSNAHPAVFQSITKKVVVPTQ 297
           R VK F   RSG+              P +     F+ IT + + P+ 
Sbjct: 248 RRVKTFLRRRSGRTSGPSRHAMAAIAGPVDGPRPTFEVITGRPIAPSD 295


>gi|53720643|ref|YP_109629.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei
           K96243]
 gi|167817538|ref|ZP_02449218.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 91]
 gi|115311582|sp|Q63QI9|RSMH_BURPS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|52211057|emb|CAH37045.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei
           K96243]
          Length = 313

 Score =  337 bits (864), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 111/312 (35%), Positives = 173/312 (55%), Gaps = 19/312 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  V +D TFG GG+SR+          +IA D+DP A+   + 
Sbjct: 7   HRTVLLDEAVDALVTRPDGVYVDGTFGRGGHSRAVLARLGYAGRLIAFDKDPRAIETAES 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +F +   +F+ ++  +  +G   V GV+ DLGVSS Q+D   RGFSF+ +GPL
Sbjct: 67  I---EDARFEIVHDSFAAMKGALDARGIGRVSGVLLDLGVSSPQVDDPARGFSFRANGPL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS----APFQTT 188
           DMRM  + G SA++ + +A+V++LT ++   GEE+ A +IA AIV RR       P  +T
Sbjct: 124 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRLGPLDST 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ ++   V   +     PATR+FQA+RI VN E+ +L   L +A   L+ GG L+V+
Sbjct: 184 GELAQIVGHVVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLEAALSLLEQGGRLVVI 242

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           SFHSLEDR+VK+F  + +      R +    ++      + + +  + P   +VA N R+
Sbjct: 243 SFHSLEDRIVKRFLQAHASAPAVDRRLPIRAADLPRPPLKLLGR--MFPNDAEVAANPRA 300

Query: 307 RSAKLRAGMRTV 318
           RSA +R   R  
Sbjct: 301 RSAVMRIAERVA 312


>gi|254191020|ref|ZP_04897526.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei
           Pasteur 52237]
 gi|157938694|gb|EDO94364.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei
           Pasteur 52237]
          Length = 313

 Score =  336 bits (863), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 111/312 (35%), Positives = 173/312 (55%), Gaps = 19/312 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  V +D TFG GG+SR+          +IA D+DP A+   + 
Sbjct: 7   HRTVLLDEAVDALVTRPDGVYVDGTFGRGGHSRAVLARLGDAGRLIAFDKDPRAIETAES 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +F +   +F+ ++  +  +G   V GV+ DLGVSS Q+D   RGFSF+ +GPL
Sbjct: 67  I---EDARFEIVHDSFAAMKGALDARGIGRVSGVLLDLGVSSPQVDDPARGFSFRANGPL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS----APFQTT 188
           DMRM  + G SA++ + +A+V++LT ++   GEE+ A +IA AIV RR       P  +T
Sbjct: 124 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRLGPLDST 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ ++   V   +     PATR+FQA+RI VN E+ +L   L +A   L+ GG L+V+
Sbjct: 184 GELAQIVGHVVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLEAALSLLEQGGRLVVI 242

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           SFHSLEDR+VK+F  + +      R +    ++      + + +  + P   +VA N R+
Sbjct: 243 SFHSLEDRIVKRFLQAHASAPAVDRRLPIRAADLPSPPLKLLGR--MFPNDAEVAANPRA 300

Query: 307 RSAKLRAGMRTV 318
           RSA +R   R  
Sbjct: 301 RSAVMRIAERVA 312


>gi|113869234|ref|YP_727723.1| S-adenosyl-methyltransferase MraW [Ralstonia eutropha H16]
 gi|123032664|sp|Q0K6L6|RSMH_RALEH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|113528010|emb|CAJ94355.1| conserved hypothetical protein [Ralstonia eutropha H16]
          Length = 333

 Score =  336 bits (863), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 119/317 (37%), Positives = 181/317 (57%), Gaps = 21/317 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  V +D TFG GG+SR+          ++A D+DP A++    
Sbjct: 14  HRTVLLDEAVDALVWRPDGVYVDGTFGRGGHSRAVLARLGPDGALVAFDKDPAAIAEAGT 73

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
                  +FS+  A+F+ + + +  +G V GV+ DLG+SS QID   RGFSF+  GPLDM
Sbjct: 74  I---KDARFSIEHASFAAMAERLSGRGHVAGVLLDLGISSPQIDEAARGFSFRFEGPLDM 130

Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS----APFQTTQD 190
           RM  + GI+A+  + QA+ +D+ R++   GEE+ A +IA AIV RR       P  TT D
Sbjct: 131 RMDTTRGITAAQWLAQADEQDIARVIRDYGEERFAVQIAKAIVARRSEPGDGGPIATTAD 190

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L++L+ K V   +     PATR+FQALRI VN E+E+L +GL++A + L+ GG L+V+SF
Sbjct: 191 LAALVAKAVKT-REKGQDPATRTFQALRIHVNQELEDLERGLKAAYELLQVGGRLVVISF 249

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIP------SNAHPAVFQSITKKVVVPTQEDVAFNR 304
           HSLEDR+VK+F A+ +         +       ++      + + +    P  E+VA N 
Sbjct: 250 HSLEDRIVKRFMAAHARPQQDADPALRRAPLRAADLPQPTLRLLGR--YKPGPEEVAANP 307

Query: 305 RSRSAKLRAGMRTVERS 321
           R+RSA +R   +    +
Sbjct: 308 RARSAVMRVAEKLAPAA 324


>gi|308232054|ref|ZP_07663988.1| hypothetical protein TMAG_00354 [Mycobacterium tuberculosis
           SUMu001]
 gi|308370931|ref|ZP_07667052.1| hypothetical protein TMCG_00261 [Mycobacterium tuberculosis
           SUMu003]
 gi|308372156|ref|ZP_07667311.1| hypothetical protein TMDG_00643 [Mycobacterium tuberculosis
           SUMu004]
 gi|308215154|gb|EFO74553.1| hypothetical protein TMAG_00354 [Mycobacterium tuberculosis
           SUMu001]
 gi|308330345|gb|EFP19196.1| hypothetical protein TMCG_00261 [Mycobacterium tuberculosis
           SUMu003]
 gi|308334178|gb|EFP23029.1| hypothetical protein TMDG_00643 [Mycobacterium tuberculosis
           SUMu004]
          Length = 405

 Score =  336 bits (863), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 117/320 (36%), Positives = 175/320 (54%), Gaps = 18/320 (5%)

Query: 20  HVPVLLEKVIALLNPA-----PGK---VILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69
           HVPVL ++   LL PA     P     V+LDAT GAGG++  F +      +I LDRDP 
Sbjct: 74  HVPVLAQRCFELLTPALTRYYPDGSQAVLLDATIGAGGHAERFLEGLPGLRLIGLDRDPT 133

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSSMQIDCGDR 123
           A+   +  +  + ++ +L    +  L   + + G      VDG++FDLGVSSMQ+D  +R
Sbjct: 134 ALDVARSRLVRFADRLTLVHTRYDCLGAALAESGYAAVGSVDGILFDLGVSSMQLDRAER 193

Query: 124 GFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GF++    PLDMRM  +  ++A+D+VN  +   L  IL   GEE+ A RIA  IV+RR  
Sbjct: 194 GFAYATDAPLDMRMDPTTPLTAADIVNTYDEAALADILRRYGEERFARRIAAGIVRRRAK 253

Query: 183 APFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            PF +T +L +L+ + +   ++    HPA R+FQALRI VN+E+E L   + +A  AL  
Sbjct: 254 TPFTSTAELVALLYQAIPAPARRVGGHPAKRTFQALRIAVNDELESLRTAVPAALDALAI 313

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           GG + V+++ SLEDR+VK+ FA            +    H   F+S+T      +  ++ 
Sbjct: 314 GGRIAVLAYQSLEDRIVKRVFAEAVASATPAGLPVELPGHEPRFRSLTHGAERASVAEIE 373

Query: 302 FNRRSRSAKLRAGMRTVERS 321
            N RS   +LRA  R   R+
Sbjct: 374 RNPRSTPVRLRALQRVEHRA 393


>gi|331696613|ref|YP_004332852.1| ribosomal RNA small subunit methyltransferase H [Pseudonocardia
           dioxanivorans CB1190]
 gi|326951302|gb|AEA24999.1| Ribosomal RNA small subunit methyltransferase H [Pseudonocardia
           dioxanivorans CB1190]
          Length = 326

 Score =  336 bits (863), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 119/314 (37%), Positives = 178/314 (56%), Gaps = 10/314 (3%)

Query: 18  GDHVPVLLEKVIALLNPAPGK---VILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVS 72
             HVPVLL +V+ LL PA      V++DAT G GG+S +       +  + LDRDP A+ 
Sbjct: 13  ARHVPVLLPRVLELLGPALAGRPAVVVDATLGLGGHSAALLAAHPELTLVGLDRDPQALE 72

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
                +  + ++  L  A + ++ D + +    G DGV+FDLGVSS+Q+D  +RGFS+ +
Sbjct: 73  LAGRRLVAFADRTHLVHAVYDRIADVLAELGLPGADGVLFDLGVSSLQLDADERGFSYSR 132

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
              LDMRM  + G +A+DV+N   V +L RIL   GEE+ A RIA AI + R   PF  +
Sbjct: 133 DADLDMRMDPTTGPTAADVLNTYAVPELARILREYGEERFAGRIAAAIGRARDRRPFTRS 192

Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L  L+ +TV  + +    HPA R+FQALRI VN E++ L   + +A  +L  GG ++V
Sbjct: 193 SELVELLYETVPAASRRTGGHPAKRTFQALRIEVNGELDALRAAVPAAIDSLTVGGRIVV 252

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +S+HSLEDRLVK+  A+RS         +    H    + + +     ++E+V  N R+ 
Sbjct: 253 LSYHSLEDRLVKRELAARSVSTTPQDLPVELPGHGPELRLLVRGSQQASEEEVGENPRAA 312

Query: 308 SAKLRAGMRTVERS 321
           S +LRA  R  E +
Sbjct: 313 SVRLRAAERIREAA 326


>gi|194290821|ref|YP_002006728.1| s-adenosyl-methyltransferase mraw [Cupriavidus taiwanensis LMG
           19424]
 gi|263446166|sp|B3R6W7|RSMH_CUPTR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|193224656|emb|CAQ70667.1| S-adenosyl-dependent methyl transferase [Cupriavidus taiwanensis
           LMG 19424]
          Length = 329

 Score =  336 bits (863), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 119/322 (36%), Positives = 180/322 (55%), Gaps = 21/322 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  V +D TFG GG+SR+          ++A D+DP A++    
Sbjct: 14  HRTVLLDEAVDALVWRPDGVYVDGTFGRGGHSRAVLARLGPDGALVAFDKDPAAIAEAGT 73

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
                  +FS+  A+F+ + + +  +G V GV+ DLG+SS QID   RGFSF+  GPLDM
Sbjct: 74  I---KDARFSIEHASFAAMAERLAGRGHVAGVLLDLGISSPQIDEAARGFSFRFEGPLDM 130

Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS----APFQTTQD 190
           RM  + GI+A+  + QA+ +D+ R++   GEE+ A +IA AIV RR       P  TT D
Sbjct: 131 RMDTTRGITAAQWLAQADEQDIARVIRDYGEERFAVQIAKAIVARRSESGDGGPVATTAD 190

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L++L+ K V   +     PATR+FQALRI VN E+E+L +GL++A   L+ GG L+V+SF
Sbjct: 191 LAALVAKAVKT-REKGQDPATRTFQALRIHVNQELEDLERGLKAAYDLLQVGGRLVVISF 249

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIP------SNAHPAVFQSITKKVVVPTQEDVAFNR 304
           HSLEDR+VK+F A+ +         +       ++      + + +    P  E+VA N 
Sbjct: 250 HSLEDRIVKRFMAAHARPQQDADPALRRAPLRAADLPQPTLRLLGR--YKPGAEEVAANP 307

Query: 305 RSRSAKLRAGMRTVERSIEDDS 326
           R+RSA +R   +         +
Sbjct: 308 RARSAVMRVAEKLAPAGGGARA 329


>gi|53726017|ref|YP_104102.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei ATCC 23344]
 gi|67643637|ref|ZP_00442382.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei GB8 horse 4]
 gi|121598510|ref|YP_991829.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei SAVP1]
 gi|124386348|ref|YP_001027322.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei NCTC 10229]
 gi|126438415|ref|YP_001060543.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 668]
 gi|126449153|ref|YP_001082741.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei NCTC 10247]
 gi|162210064|ref|YP_334923.2| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 1710b]
 gi|166998645|ref|ZP_02264503.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei PRL-20]
 gi|167721351|ref|ZP_02404587.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei DM98]
 gi|254179030|ref|ZP_04885684.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei ATCC 10399]
 gi|254202823|ref|ZP_04909186.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei FMH]
 gi|254208165|ref|ZP_04914515.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei JHU]
 gi|254259496|ref|ZP_04950550.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 1710a]
 gi|254357631|ref|ZP_04973905.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei 2002721280]
 gi|88909189|sp|Q3JND0|RSMH_BURP1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|115311581|sp|Q62GR9|RSMH_BURMA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446914|sp|A3MR55|RSMH_BURM7 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446917|sp|A2S5V3|RSMH_BURM9 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446920|sp|A1V0S6|RSMH_BURMS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446928|sp|A3NDX2|RSMH_BURP6 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|52429440|gb|AAU50033.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei ATCC 23344]
 gi|121227320|gb|ABM49838.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei SAVP1]
 gi|124294368|gb|ABN03637.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei NCTC 10229]
 gi|126217908|gb|ABN81414.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 668]
 gi|126242023|gb|ABO05116.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei NCTC 10247]
 gi|147747070|gb|EDK54147.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei FMH]
 gi|147752059|gb|EDK59126.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei JHU]
 gi|148026695|gb|EDK84780.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei 2002721280]
 gi|160694944|gb|EDP84952.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei ATCC 10399]
 gi|238525016|gb|EEP88446.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei GB8 horse 4]
 gi|243065324|gb|EES47510.1| S-adenosyl-methyltransferase MraW [Burkholderia mallei PRL-20]
 gi|254218185|gb|EET07569.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 1710a]
          Length = 313

 Score =  336 bits (863), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 111/312 (35%), Positives = 173/312 (55%), Gaps = 19/312 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  V +D TFG GG+SR+          +IA D+DP A+   + 
Sbjct: 7   HRTVLLDEAVDALVTRPDGVYVDGTFGRGGHSRAVLARLGDAGRLIAFDKDPRAIETAES 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +F +   +F+ ++  +  +GV    GV+ DLGVSS Q+D   RGFSF+ +GPL
Sbjct: 67  I---EDARFEIVHDSFAAMKGALDARGVGRVSGVLLDLGVSSPQVDDPARGFSFRANGPL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS----APFQTT 188
           DMRM  + G SA++ + +A+V++LT ++   GEE+ A +IA AIV RR       P  +T
Sbjct: 124 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRLGPLDST 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ ++   V   +     PATR+FQA+RI VN E+ +L   L +A   L+ GG L+V+
Sbjct: 184 GELAQIVGHVVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLEAALSLLEQGGRLVVI 242

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           SFHSLEDR+VK+F  + +      R +    ++      + + +  + P   +VA N R+
Sbjct: 243 SFHSLEDRIVKRFLQAHASAPAVDRRLPIRAADLPRPPLKLLGR--MFPNDAEVAANPRA 300

Query: 307 RSAKLRAGMRTV 318
           RSA +R   R  
Sbjct: 301 RSAVMRIAERVA 312


>gi|308380285|ref|ZP_07669154.1| hypothetical protein TMKG_00427 [Mycobacterium tuberculosis
           SUMu011]
 gi|308361967|gb|EFP50818.1| hypothetical protein TMKG_00427 [Mycobacterium tuberculosis
           SUMu011]
          Length = 425

 Score =  336 bits (863), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 117/320 (36%), Positives = 175/320 (54%), Gaps = 18/320 (5%)

Query: 20  HVPVLLEKVIALLNPA-----PGK---VILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69
           HVPVL ++   LL PA     P     V+LDAT GAGG++  F +      +I LDRDP 
Sbjct: 94  HVPVLAQRCFELLTPALTRYYPDGSQAVLLDATIGAGGHAERFLEGLPGLRLIGLDRDPT 153

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSSMQIDCGDR 123
           A+   +  +  + ++ +L    +  L   + + G      VDG++FDLGVSSMQ+D  +R
Sbjct: 154 ALDVARSRLVRFADRLTLVHTRYDCLGAALAESGYAAVGSVDGILFDLGVSSMQLDRAER 213

Query: 124 GFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GF++    PLDMRM  +  ++A+D+VN  +   L  IL   GEE+ A RIA  IV+RR  
Sbjct: 214 GFAYATDAPLDMRMDPTTPLTAADIVNTYDEAALADILRRYGEERFARRIAAGIVRRRAK 273

Query: 183 APFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            PF +T +L +L+ + +   ++    HPA R+FQALRI VN+E+E L   + +A  AL  
Sbjct: 274 TPFTSTAELVALLYQAIPAPARRVGGHPAKRTFQALRIAVNDELESLRTAVPAALDALAI 333

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           GG + V+++ SLEDR+VK+ FA            +    H   F+S+T      +  ++ 
Sbjct: 334 GGRIAVLAYQSLEDRIVKRVFAEAVASATPAGLPVELPGHEPRFRSLTHGAERASVAEIE 393

Query: 302 FNRRSRSAKLRAGMRTVERS 321
            N RS   +LRA  R   R+
Sbjct: 394 RNPRSTPVRLRALQRVEHRA 413


>gi|254299374|ref|ZP_04966824.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 406e]
 gi|157808911|gb|EDO86081.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 406e]
          Length = 319

 Score =  336 bits (863), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 111/312 (35%), Positives = 173/312 (55%), Gaps = 19/312 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  V +D TFG GG+SR+          +IA D+DP A+   + 
Sbjct: 13  HRTVLLDEAVDALVTRPDGVYVDGTFGRGGHSRAVLARLGDAGRLIAFDKDPRAIETAES 72

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +F +   +F+ ++  +  +GV    GV+ DLGVSS Q+D   RGFSF+ +GPL
Sbjct: 73  I---EDARFEIVHDSFAAMKGALDARGVGRVSGVLLDLGVSSPQVDDPARGFSFRANGPL 129

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS----APFQTT 188
           DMRM  + G SA++ + +A+V++LT ++   GEE+ A +IA AIV RR       P  +T
Sbjct: 130 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRLGPLDST 189

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ ++   V   +     PATR+FQA+RI VN E+ +L   L +A   L+ GG L+V+
Sbjct: 190 GELAQIVGHVVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLEAALSLLEQGGRLVVI 248

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           SFHSLEDR+VK+F  + +      R +    ++      + + +  + P   +VA N R+
Sbjct: 249 SFHSLEDRIVKRFLQAHASAPAVDRRLPIRAADLPRPPLKLLGR--MFPNDAEVAANPRA 306

Query: 307 RSAKLRAGMRTV 318
           RSA +R   R  
Sbjct: 307 RSAVMRIAERVA 318


>gi|15616841|ref|NP_240054.1| hypothetical protein BU224 [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219681595|ref|YP_002467981.1| hypothetical protein BUAP5A_220 [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|257471280|ref|ZP_05635279.1| hypothetical protein BaphL_01110 [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|11387278|sp|P57319|RSMH_BUCAI RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|254813207|sp|B8D922|RSMH_BUCA5 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|25302081|pir||D84956 hypothetical protein [imported] - Buchnera sp. (strain APS)
 gi|10038905|dbj|BAB12940.1| hypothetical protein [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
 gi|219624438|gb|ACL30593.1| hypothetical protein BUAP5A_220 [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
          Length = 312

 Score =  336 bits (862), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 123/312 (39%), Positives = 187/312 (59%), Gaps = 19/312 (6%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSC 73
           I  H+PV+ +++I  L      + +D+TFG GG+S    K       + ++DRDP A S 
Sbjct: 4   IFKHIPVMKKELIDSLKIKKNGIYIDSTFGTGGHSNEILKKLGQNGRLYSIDRDPIAFSI 63

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQK 129
           G E       +F +    FS+L D+  ++     V+G++FDLGVSS+QID   RGFSF+ 
Sbjct: 64  GSEI---KDSRFHIINENFSKLLDFAKNEKIIGKVNGIIFDLGVSSIQIDDYRRGFSFKN 120

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM+ + GISAS+ + ++NVK+++ +L   GEE+ + +IA+AI +R Q     +T
Sbjct: 121 DGPLDMRMNPNYGISASEWLFESNVKEISFVLKNFGEERFSRKIAYAIKRRSQIKKITST 180

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+++I+KT+   KN   HPA RSFQA+RI++N E+EE+ + L S  K LK GG + ++
Sbjct: 181 LELANIIKKTIPT-KNKFKHPARRSFQAIRIYINQELEEIQKALESTLKILKPGGRISII 239

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFN 303
           SFHSLEDRLVKKF    S K +    M  +            + I +  ++PTQ ++  N
Sbjct: 240 SFHSLEDRLVKKFMIKNSTKAIIPYGMPITEEQLNRLTTCKLKIINR--ILPTQNEINNN 297

Query: 304 RRSRSAKLRAGM 315
            R+RS+ LR   
Sbjct: 298 PRARSSVLRIAE 309


>gi|237813927|ref|YP_002898378.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei
           MSHR346]
 gi|237506330|gb|ACQ98648.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei
           MSHR346]
          Length = 313

 Score =  336 bits (862), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 111/312 (35%), Positives = 173/312 (55%), Gaps = 19/312 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  V +D TFG GG+SR+          +IA D+DP A+   + 
Sbjct: 7   HRTVLLDEAVDALVTRPDGVYVDGTFGRGGHSRAVLARLGDAGRLIAFDKDPRAIETAES 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +F +   +F+ ++  +  +GV    GV+ DLGVSS Q+D   RGFSF+ +GPL
Sbjct: 67  I---EDARFEIVHDSFAAMKGALDARGVGRVSGVLLDLGVSSPQVDDPARGFSFRANGPL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS----APFQTT 188
           DMRM  + G SA++ + +A+V++LT ++   GEE+ A +IA AIV RR       P  +T
Sbjct: 124 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRLGPLDST 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ ++   V   +     PATR+FQA+RI VN E+ +L   L +A   L+ GG L+V+
Sbjct: 184 GELAQIVGHVVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLEAALSLLEQGGRLVVI 242

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           SFHSLEDR+VK+F  + +      R +    ++      + + +  + P   +VA N R+
Sbjct: 243 SFHSLEDRIVKRFLQAHASAPAVDRRLPIRAADRPSPPLKLLGR--MFPNDAEVAANPRA 300

Query: 307 RSAKLRAGMRTV 318
           RSA +R   R  
Sbjct: 301 RSAVMRIAERVA 312


>gi|121638047|ref|YP_978271.1| S-adenosyl-methyltransferase MraW [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|148661981|ref|YP_001283504.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis
           H37Ra]
 gi|148823374|ref|YP_001288128.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis F11]
 gi|224990541|ref|YP_002645228.1| S-adenosyl-methyltransferase [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|253798770|ref|YP_003031771.1| methylase MraW [Mycobacterium tuberculosis KZN 1435]
 gi|254364966|ref|ZP_04981012.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
           Haarlem]
 gi|260205463|ref|ZP_05772954.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis K85]
 gi|289443672|ref|ZP_06433416.1| MraW methylase MraW [Mycobacterium tuberculosis T46]
 gi|289447793|ref|ZP_06437537.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis
           CPHL_A]
 gi|289554048|ref|ZP_06443258.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
 gi|289570281|ref|ZP_06450508.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289574851|ref|ZP_06455078.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis K85]
 gi|289745439|ref|ZP_06504817.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis
           02_1987]
 gi|289750761|ref|ZP_06510139.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289754275|ref|ZP_06513653.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis
           EAS054]
 gi|289758287|ref|ZP_06517665.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis T85]
 gi|289762326|ref|ZP_06521704.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
 gi|297731746|ref|ZP_06960864.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis KZN
           R506]
 gi|298525659|ref|ZP_07013068.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis
           94_M4241A]
 gi|306793634|ref|ZP_07431936.1| hypothetical protein TMEG_02533 [Mycobacterium tuberculosis
           SUMu005]
 gi|308375796|ref|ZP_07668118.1| hypothetical protein TMGG_00723 [Mycobacterium tuberculosis
           SUMu007]
 gi|308376929|ref|ZP_07668385.1| hypothetical protein TMHG_01355 [Mycobacterium tuberculosis
           SUMu008]
 gi|308377928|ref|ZP_07668626.1| hypothetical protein TMIG_00833 [Mycobacterium tuberculosis
           SUMu009]
 gi|308379135|ref|ZP_07668903.1| hypothetical protein TMJG_00427 [Mycobacterium tuberculosis
           SUMu010]
 gi|2104313|emb|CAB08662.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv]
 gi|31618937|emb|CAD97042.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
 gi|121493695|emb|CAL72170.1| Conserved hypothetical protein [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|134150480|gb|EBA42525.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148506133|gb|ABQ73942.1| S-adenosyl-methyltransferase [Mycobacterium tuberculosis H37Ra]
 gi|148721901|gb|ABR06526.1| conserved hypothetical protein [Mycobacterium tuberculosis F11]
 gi|224773654|dbj|BAH26460.1| S-adenosyl-methyltransferase [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|253320273|gb|ACT24876.1| methylase MraW [Mycobacterium tuberculosis KZN 1435]
 gi|289416591|gb|EFD13831.1| MraW methylase MraW [Mycobacterium tuberculosis T46]
 gi|289420751|gb|EFD17952.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis
           CPHL_A]
 gi|289438680|gb|EFD21173.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
 gi|289539282|gb|EFD43860.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis K85]
 gi|289544035|gb|EFD47683.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289685967|gb|EFD53455.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis
           02_1987]
 gi|289691348|gb|EFD58777.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289694862|gb|EFD62291.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis
           EAS054]
 gi|289709832|gb|EFD73848.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
 gi|289713851|gb|EFD77863.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis T85]
 gi|298495453|gb|EFI30747.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis
           94_M4241A]
 gi|308337978|gb|EFP26829.1| hypothetical protein TMEG_02533 [Mycobacterium tuberculosis
           SUMu005]
 gi|308345155|gb|EFP34006.1| hypothetical protein TMGG_00723 [Mycobacterium tuberculosis
           SUMu007]
 gi|308349457|gb|EFP38308.1| hypothetical protein TMHG_01355 [Mycobacterium tuberculosis
           SUMu008]
 gi|308354088|gb|EFP42939.1| hypothetical protein TMIG_00833 [Mycobacterium tuberculosis
           SUMu009]
 gi|308358031|gb|EFP46882.1| hypothetical protein TMJG_00427 [Mycobacterium tuberculosis
           SUMu010]
 gi|326903782|gb|EGE50715.1| hypothetical protein TBPG_01665 [Mycobacterium tuberculosis W-148]
 gi|328458533|gb|AEB03956.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
           4207]
          Length = 396

 Score =  336 bits (862), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 117/320 (36%), Positives = 175/320 (54%), Gaps = 18/320 (5%)

Query: 20  HVPVLLEKVIALLNPA-----PGK---VILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69
           HVPVL ++   LL PA     P     V+LDAT GAGG++  F +      +I LDRDP 
Sbjct: 65  HVPVLAQRCFELLTPALTRYYPDGSQAVLLDATIGAGGHAERFLEGLPGLRLIGLDRDPT 124

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSSMQIDCGDR 123
           A+   +  +  + ++ +L    +  L   + + G      VDG++FDLGVSSMQ+D  +R
Sbjct: 125 ALDVARSRLVRFADRLTLVHTRYDCLGAALAESGYAAVGSVDGILFDLGVSSMQLDRAER 184

Query: 124 GFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GF++    PLDMRM  +  ++A+D+VN  +   L  IL   GEE+ A RIA  IV+RR  
Sbjct: 185 GFAYATDAPLDMRMDPTTPLTAADIVNTYDEAALADILRRYGEERFARRIAAGIVRRRAK 244

Query: 183 APFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            PF +T +L +L+ + +   ++    HPA R+FQALRI VN+E+E L   + +A  AL  
Sbjct: 245 TPFTSTAELVALLYQAIPAPARRVGGHPAKRTFQALRIAVNDELESLRTAVPAALDALAI 304

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           GG + V+++ SLEDR+VK+ FA            +    H   F+S+T      +  ++ 
Sbjct: 305 GGRIAVLAYQSLEDRIVKRVFAEAVASATPAGLPVELPGHEPRFRSLTHGAERASVAEIE 364

Query: 302 FNRRSRSAKLRAGMRTVERS 321
            N RS   +LRA  R   R+
Sbjct: 365 RNPRSTPVRLRALQRVEHRA 384


>gi|269795582|ref|YP_003315037.1| S-adenosyl-methyltransferase MraW [Sanguibacter keddieii DSM 10542]
 gi|269097767|gb|ACZ22203.1| S-adenosyl-methyltransferase MraW [Sanguibacter keddieii DSM 10542]
          Length = 346

 Score =  336 bits (862), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 114/312 (36%), Positives = 179/312 (57%), Gaps = 10/312 (3%)

Query: 15  HTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69
            T   H+PVLL++ + LL PA   PG V +D T G GG++ +  +      VI +DRDP 
Sbjct: 21  ETSDRHLPVLLDRCVELLAPALSVPGAVYVDCTLGMGGHTEAILERLPEVRVIGIDRDPQ 80

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFS 126
           A+      +  +  +F+   A + ++ D V ++G   V G++ DLGVSS+QID  +RGFS
Sbjct: 81  ALELAGARLERFGSRFTGVHAVYDEIGDVVAEQGLTGVQGILMDLGVSSLQIDERERGFS 140

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           + +  PLDMRM  +  ++A+DV+N  + +DL RIL   GEE+ AS+IA +IV +R++ P+
Sbjct: 141 YAQDAPLDMRMDSTASLTAADVLNTYSERDLARILREYGEERFASKIARSIVAKREARPW 200

Query: 186 QTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           + + DL  L++  +  + +    +PA R+FQALRI VN E+E L + L +A +AL  GG 
Sbjct: 201 ERSADLVDLVRACIPAATRKGTGNPAKRTFQALRIEVNGELEVLERALPAAVEALAVGGR 260

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           ++V S+HSLEDRL K+     +         +    H      +T+      + ++  N 
Sbjct: 261 IVVESYHSLEDRLTKRELGRGAVSSAPHDLPVEPETHKPYLSLLTRGAEEADEAELERNP 320

Query: 305 RSRSAKLRAGMR 316
           RS S +LRA  R
Sbjct: 321 RSASVRLRAAER 332


>gi|332836127|ref|XP_003313021.1| PREDICTED: methyltransferase like 15 isoform 1 [Pan troglodytes]
          Length = 407

 Score =  336 bits (862), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 130/335 (38%), Positives = 185/335 (55%), Gaps = 38/335 (11%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H+PV++++V+  L+P  G++ LD TFG+GG++++  +  S+  + ALDRDP A +  +  
Sbjct: 72  HIPVMVDEVVHCLSPQKGQIFLDMTFGSGGHTKAILQKESDIVLYALDRDPTAYALAEHL 131

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              Y +Q       FSQ +  +   GV     DGV+ DLG SSMQ+D  +RGFS +K GP
Sbjct: 132 SELYPKQIRAMLGQFSQAEALLMKAGVQPGTFDGVLMDLGCSSMQLDTPERGFSLRKDGP 191

Query: 133 LDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           LDMRM         +A+DVVN  + + L  IL   GEEK A +IA AIV+ R   P   T
Sbjct: 192 LDMRMDGGRYPDMPTAADVVNALDQQALASILRTYGEEKHAKKIASAIVQARSIYPITRT 251

Query: 189 QDLSSLIQKTVYFSK--------NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           Q L+ ++      S             H AT++FQALRIFVNNE+ EL  GL++A+K L+
Sbjct: 252 QQLAGIVAGAFPPSAVYTRKDLLQRSTHIATKTFQALRIFVNNELNELYTGLKTAQKFLR 311

Query: 241 AGGLLIVVSFHSLEDRLVKKFF-------------------ASRSGKVMAVRHMIPSNAH 281
            GG L+ +SFHSLEDR+VK+F                     S+ G        +     
Sbjct: 312 PGGRLVALSFHSLEDRIVKRFLLGISMTERFNLSVRQQVMKTSQLGSDHENTEEVSMRRA 371

Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           P +++ I KKV+ P  +DV  N R RSAKLRA ++
Sbjct: 372 PLMWELIHKKVLSPQDQDVQDNPRGRSAKLRAAIK 406


>gi|27904707|ref|NP_777833.1| hypothetical protein bbp206 [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
 gi|29839463|sp|P59522|RSMH_BUCBP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|27904104|gb|AAO26938.1| hypothetical protein bbp_206 [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
          Length = 315

 Score =  336 bits (862), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 107/311 (34%), Positives = 162/311 (52%), Gaps = 18/311 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQE 76
           H PVLL + I  L+     + +DATFG GG+S+   K       + ++D+DP+A+    +
Sbjct: 7   HTPVLLNETIQNLDIKNDGIYIDATFGYGGHSKEILKHLGKNGKLYSIDQDPYAIKIANK 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              D   +F++    FS +  Y         V+G++ DLG+SSMQI+  +RGFSF   GP
Sbjct: 67  LKND--TRFNIIHGKFSNILKYSNKNKIRGKVNGILLDLGMSSMQINNPNRGFSFISDGP 124

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+ + GI A   + + N+  L  +L   GEE  + +IA+ I+   +      T +L
Sbjct: 125 LDMRMNPNTGIPAYMWLKKTNLTTLYHVLKKYGEEPFSKKIAYNIIAYNKKKTITRTLEL 184

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           S +I  ++   K  + HPA R FQA+RI++N+EI EL Q L      L  GG L+++SFH
Sbjct: 185 SKIITNSIPIKKYRK-HPARRVFQAIRIYINHEIYELQQALEHVLNILIPGGKLLILSFH 243

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNRRS 306
           SLEDR VKKF    S        +  +            + ITK  + P+  ++  N R+
Sbjct: 244 SLEDRTVKKFMIKYSKPPFVPPGLAITETQLKSLANKQLKIITK--IFPSTIEIRKNPRA 301

Query: 307 RSAKLRAGMRT 317
            SA LR   + 
Sbjct: 302 HSAILRVAQKN 312


>gi|217425690|ref|ZP_03457180.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 576]
 gi|217391278|gb|EEC31310.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 576]
          Length = 313

 Score =  336 bits (862), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 111/312 (35%), Positives = 173/312 (55%), Gaps = 19/312 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  V +D TFG GG+SR+          +IA D+DP A+   + 
Sbjct: 7   HRTVLLDEAVDALVTRPDGVYVDGTFGRGGHSRAVLARLGDAGRLIAFDKDPRAIETAES 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +F +   +F+ ++  +  +G   V GV+ DLGVSS Q+D   RGFSF+ +GPL
Sbjct: 67  I---EDARFEIVHDSFAAMKGALDARGIGRVSGVLLDLGVSSPQVDDPARGFSFRANGPL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS----APFQTT 188
           DMRM  + G SA++ + +A+V++LT ++   GEE+ A +IA AIV RR       P  +T
Sbjct: 124 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRLGPLDST 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ ++   V   +     PATR+FQA+RI VN E+ +L   L +A   L+ GG L+V+
Sbjct: 184 GELAQIVGHVVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLEAALSLLEQGGRLVVI 242

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           SFHSLEDR+VK+F  + +      R +    ++      + + +  + P   +VA N R+
Sbjct: 243 SFHSLEDRIVKRFLQAHASAPAVDRRLPIRAADLPRPPLKLLGR--MFPNDAEVAANPRA 300

Query: 307 RSAKLRAGMRTV 318
           RSA +R   R  
Sbjct: 301 RSAVMRIAERVA 312


>gi|290969165|ref|ZP_06560690.1| S-adenosyl-methyltransferase MraW [Megasphaera genomosp. type_1
           str. 28L]
 gi|290780671|gb|EFD93274.1| S-adenosyl-methyltransferase MraW [Megasphaera genomosp. type_1
           str. 28L]
          Length = 310

 Score =  336 bits (862), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 112/306 (36%), Positives = 169/306 (55%), Gaps = 8/306 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQ 75
            HV VL E+ +A +      + +D T G GG++ +     +  + VI LDRD  A+    
Sbjct: 4   HHVSVLREETVAAVLGPKNGIYVDCTLGGGGHAATLAAQLQEEALVIGLDRDRDALRAAA 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             ++    +  L Q  F  L D + +     VDG++FDLGVS  Q+D  +RGFS+ + GP
Sbjct: 64  ARLQGVPCRTRLVQRNFQYLADVLQELHLPYVDGIMFDLGVSGYQLDTPERGFSYMQDGP 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM     + AS VVN  + + L  ++   GEE+ A RIA  IV+ R+  PF  T +L
Sbjct: 124 LDMRMDQRCAVPASTVVNTYSEEALYSLIKAYGEERWAKRIAAFIVRARRQKPFSRTAEL 183

Query: 192 SSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I++ +   ++ +  HPA R+FQALRI VNNE+  L   L +A + LK GG + V++F
Sbjct: 184 VYVIKQAIPAGARRDGPHPAKRTFQALRIEVNNELGILHDALTTAVQHLKPGGKIGVITF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDR+ K+ F   +   +    +     H      + ++VV P+ ++VA N R+RSAK
Sbjct: 244 HSLEDRITKQTFKELATDCICPPDLPVCTCHHRASIRVRRQVVTPSPQEVADNPRARSAK 303

Query: 311 LRAGMR 316
           LR   R
Sbjct: 304 LRVAER 309


>gi|238809925|dbj|BAH69715.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 320

 Score =  336 bits (862), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 108/317 (34%), Positives = 161/317 (50%), Gaps = 16/317 (5%)

Query: 7   KTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIAL 64
           K +   ++     H  VLL++ I  LN  P  + +D T G GG+S    K      +IA 
Sbjct: 11  KFLKEVVNKMENQHFSVLLQESIDALNIKPDGIYVDLTLGMGGHSSEILKRLDTGRLIAF 70

Query: 65  DRDPFAVSCGQETMRDYKE-QFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDC 120
           D+D FA+   ++ +   K   F L  + F  ++  +       VDG++ DLG+SS Q+D 
Sbjct: 71  DKDTFAIEESRKRLSQIKSTNFQLIHSDFKNIKSELDKLNISQVDGIIADLGISSPQVDN 130

Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS+ K+  LDMRM  S  + A  VVN  +   L ++L    E K A ++A AI+ +
Sbjct: 131 DERGFSYNKNARLDMRMDQSQKLDAYYVVNNYSESQLEQLLRNYAEVKLARQVAKAIISK 190

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
           R   P  TT +L+ +++           +P    FQA+RI VNNE + L Q L+ A + L
Sbjct: 191 R---PITTTLELAQVVRDAYPAKLVKLKNPNKAVFQAIRIEVNNEFDSLKQMLQDAIELL 247

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
           K    L V++FHSLED +VK FF S     +  +  I       V      KV +PT  +
Sbjct: 248 KPNTSLAVITFHSLEDSIVKHFFGSLIKSKLPAKMPINEEKQYKV------KVFLPTNNE 301

Query: 300 VAFNRRSRSAKLRAGMR 316
           +  N+RSRSAKLR   +
Sbjct: 302 LELNKRSRSAKLRVLKK 318


>gi|167626453|ref|YP_001676953.1| S-adenosyl-methyltransferase MraW [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|254813209|sp|B0TZ13|RSMH_FRAP2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|167596454|gb|ABZ86452.1| S-adenosylmethionine-dependent methyltransferase [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
          Length = 308

 Score =  336 bits (862), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 118/309 (38%), Positives = 173/309 (55%), Gaps = 16/309 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76
            H  VLL++ IA LN  P  + +DATFG GG+S++         +IA D+D  A+     
Sbjct: 4   MHFSVLLQESIADLNINPEGIYIDATFGRGGHSKAILDKLTSGRLIAFDKDLDAIDYATH 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             ++  + F +  A+F+ + DY         VDG++ DLGVSS Q+D  +RGFSF   GP
Sbjct: 64  NFQN--DNFEMVHASFTYIYDYCLQHNLLGRVDGIIMDLGVSSPQLDNANRGFSFTHDGP 121

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTTQD 190
           LDMRM  S G++AS  + + +V +LT I  + GEE+ A +IA  I     ++    TT  
Sbjct: 122 LDMRMDISKGLTASQALEELSVDELTYIFKVYGEERFAKKIALRIKGYIAENGSITTTHQ 181

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ LI+ T+   K  + +PATR FQALRI+VN+E+++L   L S    +K GG +  +SF
Sbjct: 182 LAELIRATI--GKREKKNPATRCFQALRIYVNDELKDLEILLESILDVIKKGGRVAAISF 239

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH---MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           HSLEDR+VK+ F S             M+P +      + ITKK     Q++++ N RSR
Sbjct: 240 HSLEDRIVKQKFTSLINPKQETNRIAKMLPQDNSQVKMKWITKKA-KANQDELSQNVRSR 298

Query: 308 SAKLRAGMR 316
           SA LR   +
Sbjct: 299 SAILRVVEK 307


>gi|326333502|ref|ZP_08199743.1| S-adenosyl-methyltransferase MraW [Nocardioidaceae bacterium
           Broad-1]
 gi|325948702|gb|EGD40801.1| S-adenosyl-methyltransferase MraW [Nocardioidaceae bacterium
           Broad-1]
          Length = 336

 Score =  336 bits (862), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 122/322 (37%), Positives = 189/322 (58%), Gaps = 9/322 (2%)

Query: 16  TIGDHVPVLLEKVIALLNPA--PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAV 71
           T   HVPV+L++++ LL PA   G V++D T G GG++ +  +   GS VI +DRD +A+
Sbjct: 7   TNQKHVPVMLDRIVDLLAPALADGGVLVDCTTGHGGHTEAVLERIPGSRVIGIDRDTYAL 66

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQ 128
               E +  + ++++   A + ++ D V ++G+D    V+FDLGVSSMQ+D  +RGF++ 
Sbjct: 67  GIAGERLARFGDRWTGVHAVYDEILDVVAEQGLDEVQAVLFDLGVSSMQLDQRERGFAYA 126

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           +  PLDMRM  + G +A+DV+N  +  DLTRIL   GEEK A +IAHA+VKRR+  PF T
Sbjct: 127 EDAPLDMRMDATRGQTAADVLNTYSAADLTRILRDYGEEKFAKKIAHAVVKRREKQPFTT 186

Query: 188 TQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           +  L  L+   +   ++    HPA R+FQALR+ VN+E+  L   L ++ +A+  GG ++
Sbjct: 187 SGPLVELLYAEIPAPARRTGGHPAKRTFQALRMEVNDELGALRTALPASLEAVGVGGRVV 246

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V S+HSLEDRL K+ FA  +   +              F+ +T+     T+ ++  N R+
Sbjct: 247 VESYHSLEDRLTKRAFAEATKLDVPPDLPFVPPDAEPSFRLLTRGAEQATEAEIEENPRA 306

Query: 307 RSAKLRAGMRTVERSIEDDSFV 328
            S +LRA  R   RS   D   
Sbjct: 307 ASVRLRAVERVKPRSNPRDKTA 328


>gi|268318248|ref|YP_003291967.1| S-adenosyl-methyltransferase MraW [Rhodothermus marinus DSM 4252]
 gi|262335782|gb|ACY49579.1| S-adenosyl-methyltransferase MraW [Rhodothermus marinus DSM 4252]
          Length = 327

 Score =  336 bits (862), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 116/330 (35%), Positives = 183/330 (55%), Gaps = 18/330 (5%)

Query: 1   MESKSCKTMS-SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG- 58
           M  +S  T + +A  +    HVPVL + V+  L   P    +DAT G GG++ +      
Sbjct: 1   MSERSAHTDTGAAGPYGSPYHVPVLWKAVVEGLVTDPAGCYVDATIGGGGHAAALLDALA 60

Query: 59  --SNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDL 111
               VI +DRDP A+   +  + D     +  L Q  F+ L+  +   GV   DG++ DL
Sbjct: 61  PEGRVIGIDRDPEALEAVRRRLSDAIEAGRLQLVQGNFADLEAILDRLGVAQIDGLLLDL 120

Query: 112 GVSSMQIDCGDRGFSFQKSGPLDMRMSCS--GISASDVVNQANVKDLTRILGILGEEKQA 169
           GVSS Q+D   RGFSFQ  GPLDMRM  +  G +A+ ++ + +  +L  +L   GEE +A
Sbjct: 121 GVSSHQLDEALRGFSFQAEGPLDMRMDPTSPGPTAAQLLERWSEYELAEVLRRYGEEPRA 180

Query: 170 SRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELA 229
            ++A AI + R   P +TT +L+ ++++ V   +  +     R FQALRI VN+E++ L 
Sbjct: 181 RKLARAICRAR---PIRTTAELAEVVRREVSPKEATK--TLARVFQALRIAVNDELQALE 235

Query: 230 QGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT 289
           + L +A + ++ GG L+V+S+HSLEDR VK+F    + K   VR        P  ++ +T
Sbjct: 236 RALEAATRRVRPGGRLVVLSYHSLEDRRVKRFLRYGNLKGEPVRDFYGRLIAP--WRPLT 293

Query: 290 KKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319
           ++ + P+ ++VA N R+RSA+LR   R  E
Sbjct: 294 RRAIRPSDDEVAANPRARSARLRIAERVAE 323


>gi|226360238|ref|YP_002778016.1| S-adenosyl-methyltransferase MraW [Rhodococcus opacus B4]
 gi|262825479|sp|C1AU63|RSMH_RHOOB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|226238723|dbj|BAH49071.1| methyltransferase MraW [Rhodococcus opacus B4]
          Length = 338

 Score =  336 bits (862), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 113/322 (35%), Positives = 175/322 (54%), Gaps = 18/322 (5%)

Query: 20  HVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69
           H+PVLL +   LL PA         G V++DAT G GG+S  F +      ++ALDRDP 
Sbjct: 17  HIPVLLHRADELLGPALTANDPHGGGAVMIDATLGLGGHSEHFLRTYPQLRLVALDRDPH 76

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSSMQIDCGDR 123
           A+      +  + ++ +     +  ++D +   G      V G++FDLGVSSMQ+D  DR
Sbjct: 77  ALEIAGGRLAPFADRITFVHTRYDGIEDALTQAGLSPRESVHGILFDLGVSSMQLDESDR 136

Query: 124 GFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GF++    PLDMRM  + GI+A++V+N  +  DL RIL   GEE+ A +IA  +V++R  
Sbjct: 137 GFAYSIDAPLDMRMDPTTGITAAEVLNTYSHGDLARILSTYGEERFAGKIASEVVRQRAK 196

Query: 183 APFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            PF T+  L  L+ +T+  + +    HPA R+FQALR+ VN E++ L   + +A  AL  
Sbjct: 197 EPFTTSAALVELLYRTIPAATRRTGGHPAKRTFQALRVEVNGELDSLRAAVPAALDALTV 256

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           GG ++ +S+ SLEDR+VK+    RS         +        F+ +T+     +++++ 
Sbjct: 257 GGRVVFMSYQSLEDRVVKQEITPRSKSKSPEGLPVELPGMGPEFRILTRGAERASEQEIE 316

Query: 302 FNRRSRSAKLRAGMRTVERSIE 323
            N RS   +LRA  R   RS  
Sbjct: 317 ENPRSAPVRLRAAERIARRSAA 338


>gi|160872354|ref|ZP_02062486.1| S-adenosyl-methyltransferase MraW [Rickettsiella grylli]
 gi|159121153|gb|EDP46491.1| S-adenosyl-methyltransferase MraW [Rickettsiella grylli]
          Length = 312

 Score =  335 bits (861), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 117/309 (37%), Positives = 182/309 (58%), Gaps = 13/309 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H PVLL +VI  L      + +DATFG GG++    +        IA+D+DP A++ G +
Sbjct: 7   HQPVLLTEVIENLVLDKDGIYVDATFGRGGHAGQILQRLSDKGRCIAIDKDPAAMAFGIQ 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
               + ++F ++Q +FSQL+     +GV     G++FDLGVSS Q++  +RGFSF + GP
Sbjct: 67  QW-GHDKRFKIYQGSFSQLKTMAEREGVINKVSGILFDLGVSSPQLEKAERGFSFLREGP 125

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM   +GISA++ +  A  K++ ++L   GEE+ A RIA AIV+ ++  P  TT  L
Sbjct: 126 LDMRMDPLTGISAAEWLAHAKEKEIVKVLKNYGEERYAKRIARAIVEEQKLRPIVTTVQL 185

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           +++++   +   +   HPATR+FQA+RI +NNE+E+L   L  +   LK GG L+V+SFH
Sbjct: 186 ANVVKLA-HPHWDRFKHPATRTFQAIRIQINNELEDLNVSLGQSIDVLKQGGRLLVISFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK+F    + + + ++    +P+       + I +  V P    +  N RSRSA
Sbjct: 245 SLEDRIVKRFIHQHAHEAVELKKLPFMPAEWKRPRLKKIGRG-VKPDAYAIKTNPRSRSA 303

Query: 310 KLRAGMRTV 318
            LR   +  
Sbjct: 304 LLRIAEKIA 312


>gi|110004576|emb|CAK98913.1| probable s-adenosyl-methyltransferase mraw protein [Spiroplasma
           citri]
          Length = 313

 Score =  335 bits (861), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 108/309 (34%), Positives = 164/309 (53%), Gaps = 10/309 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76
            H  VLL++ IA LN     + +D T G  G+S    K   N  +   ++D  A+   ++
Sbjct: 4   KHQTVLLQEAIAGLNILNNGIYVDCTLGRAGHSLEILKHLPNGKLYCFEQDEAAIIASKQ 63

Query: 77  TMRDYK-EQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            +++ K   + + +  F  L   +  +    V+G+++DLGVSS Q+D  +RGFS++    
Sbjct: 64  ILQESKYHNYEIIKNNFVNLAAELQVRQVKAVNGILYDLGVSSPQLDDDNRGFSYRYDSL 123

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+    ++A  +VN  + + L ++    GEE  A  IA  IV  R +    TT  L
Sbjct: 124 LDMRMNQKQELTAKIIVNTYSQEALAKLFQDYGEEPFAKVIAKNIVIARNTQEIVTTFHL 183

Query: 192 SSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +I+K++      +  HPA R FQALRI VN E+  L + L  A   L   G L+V+SF
Sbjct: 184 VEIIKKSLPQKILKKAKHPAKRVFQALRIEVNQELFVLQESLLQATTLLAVHGRLVVISF 243

Query: 251 HSLEDRLVKKFFASRSGKV-MAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRS 308
           HSLEDR+VKK+F S +      +   +P  +H  + +Q I KK +VP+  + A N RS S
Sbjct: 244 HSLEDRIVKKYFQSLTKDPNYEINQQLPVISHFESNYQIIIKKAIVPSGTEQARNHRSTS 303

Query: 309 AKLRAGMRT 317
           AKLR   R 
Sbjct: 304 AKLRILERV 312


>gi|126729243|ref|ZP_01745057.1| S-adenosyl-methyltransferase MraW [Sagittula stellata E-37]
 gi|126710233|gb|EBA09285.1| S-adenosyl-methyltransferase MraW [Sagittula stellata E-37]
          Length = 330

 Score =  335 bits (861), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 139/328 (42%), Positives = 195/328 (59%), Gaps = 13/328 (3%)

Query: 9   MSSAIH-HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDR 66
           M++A        HVPVLL  ++  + P    V +D TFGAGGY+R   + G+  VI +DR
Sbjct: 1   MAAADRIQGEAPHVPVLLAPLLREVAPVR-GVWIDGTFGAGGYARGLVEAGAERVIGIDR 59

Query: 67  DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126
           DP A       + D+    SL +  F  +         DGVV DLGVSSMQ+D  +RGFS
Sbjct: 60  DPLAHEMAAAWLDDWPA-ISLVRENFCNMDKVAD--SADGVVLDLGVSSMQLDLAERGFS 116

Query: 127 FQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           F + GPLDMRM  +G +A+D+VN  +  +L  +L + GEE+Q+ RIA  IV+ R   PF 
Sbjct: 117 FMRDGPLDMRMGQAGPTAADLVNDLSESELADVLYVYGEERQSRRIARRIVEHR---PFL 173

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           TT +L+ LI++T+  +K  + H ATRSFQALRI VN E E L QGL +AE+ LK GG+L 
Sbjct: 174 TTLELAGLIERTIGRTKPGQAHAATRSFQALRIAVNGEYEALWQGLMAAERVLKPGGMLA 233

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           VV+FHS+EDR+VK+F      +   V R+   +    A F+ +T+K V P ++++  N R
Sbjct: 234 VVTFHSVEDRMVKRFLQLHGDRKRHVNRYATETPEAEAPFEIVTRKAVGPDKDELTANPR 293

Query: 306 SRSAKLRAGMRT---VERSIEDDSFVHL 330
           +RSAKLR   RT    E    D+  + +
Sbjct: 294 ARSAKLRVARRTDLPAEAVAADEIAMPM 321


>gi|254994991|ref|ZP_05277181.1| S-adenosyl-methyltransferase MraW [Anaplasma marginale str.
           Mississippi]
          Length = 291

 Score =  335 bits (861), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 127/304 (41%), Positives = 175/304 (57%), Gaps = 20/304 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV-IALDRDPFAVSCGQETM 78
           H PVLL +V+  L+P  G V +DATFG GGYSR   +    V  A+D+D        E +
Sbjct: 3   HKPVLLNEVVEALSPKDGSVYVDATFGGGGYSRRILETAQCVVYAIDQDVVVKKYFDELL 62

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           + +  + +L  + FS+L++ V   GVD   GVVFDLG S+MQ+    RGFSF  SG LDM
Sbjct: 63  QSFPGRLNLAISRFSKLREVVLSFGVDKVDGVVFDLGTSAMQLADASRGFSFMNSGSLDM 122

Query: 136 RMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM  S +  A+  VN    K++  ++   G E+ + R+A AI+  R+      T DL+++
Sbjct: 123 RMCSSALRDAAMFVNTVPEKEMADVIYQYGGERYSRRVARAIIDARRKCRINNTGDLATI 182

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           I+  V  S+ + I PATR+FQA+RI+VNNE+EEL  GL +A + LK GG ++V SFHSLE
Sbjct: 183 IRSAVPRSRVHPIDPATRTFQAIRIWVNNELEELQAGLEAAAEVLKIGGKILVTSFHSLE 242

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           DR+VK  F S                    F  I KK ++PT E++  N RSRS KLRA 
Sbjct: 243 DRVVKHKFRSLCDMG---------------FSLINKKAIMPTDEEIKNNPRSRSGKLRAI 287

Query: 315 MRTV 318
            R  
Sbjct: 288 ARVE 291


>gi|222475152|ref|YP_002563568.1| S-adenosyl-methyltransferase (mraW) [Anaplasma marginale str.
           Florida]
 gi|255003134|ref|ZP_05278098.1| S-adenosyl-methyltransferase MraW [Anaplasma marginale str. Puerto
           Rico]
 gi|255004260|ref|ZP_05279061.1| S-adenosyl-methyltransferase MraW [Anaplasma marginale str.
           Virginia]
 gi|254813206|sp|B9KIK0|RSMH_ANAMF RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|222419289|gb|ACM49312.1| S-adenosyl-methyltransferase (mraW) [Anaplasma marginale str.
           Florida]
          Length = 291

 Score =  335 bits (860), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 128/304 (42%), Positives = 175/304 (57%), Gaps = 20/304 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV-IALDRDPFAVSCGQETM 78
           H PVLL +V+  L+P  G V +DATFG GGYSR   +    V  A+D+D        E +
Sbjct: 3   HKPVLLNEVVEALSPKDGSVYVDATFGGGGYSRRILETAQCVVYAIDQDVVVKKYFDELL 62

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           + +  + +L  + FS+L++ V   GVD   GVVFDLG S+MQ+    RGFSF  SG LDM
Sbjct: 63  QSFPGRLNLAISRFSKLREVVLSFGVDKVDGVVFDLGTSAMQLADASRGFSFMNSGSLDM 122

Query: 136 RMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM  S +  A+  VN    K++  ++   G E+ + R+A AI+  R+      T DL+++
Sbjct: 123 RMCSSALRDAAMFVNTVPEKEMADVIYQYGGERYSRRVARAIIDARRKCRINNTGDLATI 182

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           I+  V  S+ + I PATR+FQA+RI+VNNE+EEL  GL +A + LK GG ++V SFHSLE
Sbjct: 183 IRSAVPRSRVHPIDPATRTFQAIRIWVNNELEELQAGLEAAAEVLKIGGKILVTSFHSLE 242

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           DR+VK  F S                    F  I KK ++PT E+V  N RSRS KLRA 
Sbjct: 243 DRVVKHKFRSLCDMG---------------FSLINKKAIMPTDEEVKNNPRSRSGKLRAI 287

Query: 315 MRTV 318
            R  
Sbjct: 288 ARVE 291


>gi|76579862|gb|ABA49337.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 1710b]
          Length = 413

 Score =  335 bits (860), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 111/312 (35%), Positives = 173/312 (55%), Gaps = 19/312 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H  VLL++ +  L   P  V +D TFG GG+SR+          +IA D+DP A+   + 
Sbjct: 107 HRTVLLDEAVDALVTRPDGVYVDGTFGRGGHSRAVLARLGDAGRLIAFDKDPRAIETAES 166

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +F +   +F+ ++  +  +GV    GV+ DLGVSS Q+D   RGFSF+ +GPL
Sbjct: 167 I---EDARFEIVHDSFAAMKGALDARGVGRVSGVLLDLGVSSPQVDDPARGFSFRANGPL 223

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS----APFQTT 188
           DMRM  + G SA++ + +A+V++LT ++   GEE+ A +IA AIV RR       P  +T
Sbjct: 224 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRLGPLDST 283

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ ++   V   +     PATR+FQA+RI VN E+ +L   L +A   L+ GG L+V+
Sbjct: 284 GELAQIVGHVVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLEAALSLLEQGGRLVVI 342

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           SFHSLEDR+VK+F  + +      R +    ++      + + +  + P   +VA N R+
Sbjct: 343 SFHSLEDRIVKRFLQAHASAPAVDRRLPIRAADLPRPPLKLLGR--MFPNDAEVAANPRA 400

Query: 307 RSAKLRAGMRTV 318
           RSA +R   R  
Sbjct: 401 RSAVMRIAERVA 412


>gi|152990774|ref|YP_001356496.1| S-adenosyl-methyltransferase MraW [Nitratiruptor sp. SB155-2]
 gi|262824663|sp|A6Q3T0|RSMH_NITSB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|151422635|dbj|BAF70139.1| S-adenosyl-methyltransferase MraW [Nitratiruptor sp. SB155-2]
          Length = 302

 Score =  335 bits (860), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 104/304 (34%), Positives = 168/304 (55%), Gaps = 13/304 (4%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQ 75
             H PVLL +V+          I+DAT G GG+S +  K   ++  + +D+D  A++  +
Sbjct: 3   APHKPVLLNEVLESFKDRK-GTIVDATLGYGGHSEALLKSNPDIKIVGIDQDSEAIAFSK 61

Query: 76  ETMRDYKEQFSLFQATFSQ-LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           + +  Y ++  + Q  F+  ++D +    V GV+ D+GVSS+Q+D  DRGFS      LD
Sbjct: 62  QRLASYGDRVQIIQGRFADVIEDILQTHDVQGVLADIGVSSLQLDKKDRGFSIHSEN-LD 120

Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM  +  +SA  VVN  + ++L RI    GE + + ++A AI+  R   P Q+   L+ 
Sbjct: 121 MRMDQNAELSAYHVVNTYDEEELKRIFKEYGEIRHSGKLAKAIIHNR---PIQSATQLAE 177

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           + QK +   KN R+HPAT  FQA+RI VN E+++L   L + E+    G  + +++FHSL
Sbjct: 178 IAQKILP--KNKRVHPATTLFQAIRIEVNKELDQLKGLLDALERHKPKGAKVAIITFHSL 235

Query: 254 EDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           EDR+VK+ F   +   +           A+ A+   +TKK +V + +++  N R+RSAKL
Sbjct: 236 EDRIVKQHFKEWAKSCICPPEAMRCTCGANHALGNIVTKKPIVASIDELEENPRARSAKL 295

Query: 312 RAGM 315
           R   
Sbjct: 296 RVFQ 299


>gi|220912331|ref|YP_002487640.1| S-adenosyl-methyltransferase MraW [Arthrobacter chlorophenolicus
           A6]
 gi|263447791|sp|B8HGW2|RSMH_ARTCA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|219859209|gb|ACL39551.1| S-adenosyl-methyltransferase MraW [Arthrobacter chlorophenolicus
           A6]
          Length = 330

 Score =  335 bits (860), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 114/311 (36%), Positives = 171/311 (54%), Gaps = 15/311 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGK--------VILDATFGAGGYSRSFCKMGS- 59
           M+     T   HVPVL ++ I LL P            +++DAT G GG+S +  +    
Sbjct: 1   MNEQPKPTSERHVPVLRDRCINLLAPGFDAARQQGKAPIVIDATLGMGGHSEAMLQRFPD 60

Query: 60  -NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSS 115
            ++I +DRD  A++   E +  +  +  L  A + ++ + + D GV    G++ DLGVSS
Sbjct: 61  LHLIGIDRDEEALALAGERLAPFSARTDLVHAVYDEIPEVLADLGVTEISGILMDLGVSS 120

Query: 116 MQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAH 174
           +Q+D  +RGF++    PLDMRM  S G +A+DVVN  N ++L RI+   GEEK A RIA+
Sbjct: 121 LQLDERERGFAYSFDAPLDMRMDTSRGQTAADVVNTYNEEELVRIIRKWGEEKFAGRIAN 180

Query: 175 AIVKRRQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLR 233
            IV  R   PF TT +L   I+  V   +  +  HPA R+FQALRI VN E++ L + + 
Sbjct: 181 RIVAARGEKPFTTTGELVEQIRSVVPAGAAKSGGHPAKRTFQALRIEVNEELDVLERAVP 240

Query: 234 SAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV 293
           +A  AL  GG ++V+S+HSLED++VK     RS     +   +    H    + +TK   
Sbjct: 241 AAVDALAMGGRIVVMSYHSLEDKIVKSVLQGRSKSSAPLGFPVELEEHKPELKILTKGTE 300

Query: 294 VPTQEDVAFNR 304
           VPT  ++A N 
Sbjct: 301 VPTAVEIAENP 311


>gi|311087120|gb|ADP67200.1| S-adenosyl-methyltransferase MraW [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
          Length = 312

 Score =  335 bits (860), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 122/312 (39%), Positives = 187/312 (59%), Gaps = 19/312 (6%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSC 73
           I  H+PV+ +++I  L      + +D+TFG GG+S    K       + ++DRDP A S 
Sbjct: 4   IFKHIPVMKKELIDSLKIKKNGIYIDSTFGTGGHSNEILKKLGQSGRLYSIDRDPIAFSI 63

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQK 129
           G +       +F +    FS+L D+  ++     V+G++FDLGVSS+QID   RGFSF+ 
Sbjct: 64  GSKI---KDSRFHIINENFSKLLDFAKNEKIIGKVNGIIFDLGVSSIQIDDYRRGFSFKN 120

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM+ + GISAS+ + ++NVK+++ +L   GEE+ + +IA+AI +R Q     +T
Sbjct: 121 DGPLDMRMNPNYGISASEWLFESNVKEISFVLKNFGEERFSRKIAYAIKRRSQIKKITST 180

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+++I+KT+   KN   HPA RSFQA+RI++N E+EE+ + L S  K LK GG + ++
Sbjct: 181 LELANIIKKTIPT-KNKFKHPARRSFQAIRIYINQELEEIQKALESTLKILKPGGRISII 239

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFN 303
           SFHSLEDRLVKKF    S K +    M  +            + I +  ++PTQ ++  N
Sbjct: 240 SFHSLEDRLVKKFMIKNSTKAIIPYGMPITEEQLNRLTTCKLKIINR--ILPTQNEINNN 297

Query: 304 RRSRSAKLRAGM 315
            R+RS+ LR   
Sbjct: 298 PRARSSVLRIAE 309


>gi|110598571|ref|ZP_01386839.1| methyltransferase [Chlorobium ferrooxidans DSM 13031]
 gi|110339805|gb|EAT58312.1| methyltransferase [Chlorobium ferrooxidans DSM 13031]
          Length = 329

 Score =  335 bits (860), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 109/319 (34%), Positives = 179/319 (56%), Gaps = 21/319 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--------VIALDRDPFAV 71
           HVPVL ++++A L   P  V +D T G GG+S +  +            +I +D+D  A+
Sbjct: 7   HVPVLADEIVAFLVQKP-GVYVDGTLGGGGHSLAILRALEKAGYLESSLLIGIDQDDAAL 65

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPD--------KGVDGVVFDLGVSSMQIDCGDR 123
              +ET+R+++    L +  F ++   +          + V G++ DLGVSS QID  +R
Sbjct: 66  RKAEETLREFRTNSVLVKGNFEEISGVIQRVCSERERPRKVSGILLDLGVSSFQIDSAER 125

Query: 124 GFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GFS+ ++GPLDMRM  SG  SA+D+VN  + ++L +I    GEE ++  I+ AIV  RQ 
Sbjct: 126 GFSYLRNGPLDMRMDSSGQRSAADIVNTCDERELAQIFYRYGEEPRSRAISRAIVGYRQK 185

Query: 183 -APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
             P  TT++L+ +I + + +  +N I   +R FQALRI VN E++ L + L    ++L+ 
Sbjct: 186 HGPISTTEELAGII-RAIAYGGDNVIKTLSRVFQALRIEVNRELDVLREALCDGIESLED 244

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDV 300
            G + V+S+HSLEDR+VK  FA  + +    + + +         + +T+K ++ +  + 
Sbjct: 245 HGRMAVISYHSLEDRIVKTVFADSAREDWGPKGVGLREPLKRGAIRLVTRKPLIASSGET 304

Query: 301 AFNRRSRSAKLRAGMRTVE 319
           A N R+RSAKLR   +  E
Sbjct: 305 ASNSRARSAKLRVIEKNPE 323


>gi|58038635|ref|YP_190599.1| SAM-dependent methytransferase [Gluconobacter oxydans 621H]
 gi|68565412|sp|Q5FUK3|RSMH_GLUOX RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|58001049|gb|AAW59943.1| SAM-dependent methytransferase [Gluconobacter oxydans 621H]
          Length = 323

 Score =  335 bits (859), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 127/298 (42%), Positives = 169/298 (56%), Gaps = 5/298 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQETM 78
           HVPV+L +V+  L+P  G   LD TFG GGY+R+        + A+DRDP A+  G    
Sbjct: 11  HVPVMLHEVLEALSPRAGGRYLDGTFGGGGYARAILNAADCTLDAIDRDPAAIERGNAMA 70

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
                +  + Q TF  ++     +G  DG+V DLGVSS QID  +RGFSF+  GPLDMRM
Sbjct: 71  VQANGRLRMHQGTFGDMEALAGAEGPFDGIVLDLGVSSFQIDQAERGFSFRNDGPLDMRM 130

Query: 138 SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK 197
              G SA+D+VN     +L  IL   GEEK + RIA AIV  R  AP  TT  L+ +I+ 
Sbjct: 131 GSDGPSAADLVNTCKEAELADILYRYGEEKLSRRIARAIVAARAEAPITTTGQLAHIIRC 190

Query: 198 TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRL 257
            V   + N I PATRSFQ LRI VN+E+ EL + L +A + L  GG+ +VV+FHSLEDRL
Sbjct: 191 CVPRDRAN-IDPATRSFQGLRIAVNDELGELERALEAAPRLLAPGGIFVVVTFHSLEDRL 249

Query: 258 VKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
            K+  A  +G+          P       F  +  + +  T E+   N R+RSA+LRA
Sbjct: 250 AKRAMAVLAGRTGNPSRYEPAPLRQEAPAFSLLYSRPLSATDEESRENPRARSARLRA 307


>gi|34556618|ref|NP_906433.1| S-adenosyl-methyltransferase MraW [Wolinella succinogenes DSM 1740]
 gi|42559439|sp|Q7MSS6|RSMH_WOLSU RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|34482332|emb|CAE09333.1| conserved hypothetical protein CJ0693C [Wolinella succinogenes]
          Length = 303

 Score =  335 bits (859), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 106/302 (35%), Positives = 167/302 (55%), Gaps = 10/302 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76
            H+ VL  +V+ +  P      +D T G GG+S +  K    +  I +D+DP A+   Q+
Sbjct: 4   PHLSVLKNEVLEIFAPLSEGYFIDCTLGFGGHSEAILKAHPKLSLIGIDQDPHALEFSQK 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
            +  +K++FS  +  FS++   + +  + G++ D+GVSS+Q+D   RGFSF     LDMR
Sbjct: 64  RLAPFKDRFSFREGRFSEVLPTLKELPIAGILADIGVSSLQLDDSSRGFSFHSE-RLDMR 122

Query: 137 MSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M+ +  +SA +VVN      L RI    GE K++ ++   I + R+     + + LS LI
Sbjct: 123 MNPNAQLSALEVVNSYPQDRLERIFKEYGEIKESKKLVSLISEERKKGRITSAEALSRLI 182

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           ++  +F +   IHPAT +FQA+RI VN+E+ E+ + L++  +  K  G + ++SFHSLED
Sbjct: 183 ER--HFKRVGNIHPATLAFQAIRIEVNDELGEIGRALQTIGEIAK--GRVSIISFHSLED 238

Query: 256 RLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           RLVK FF   S   +            +    Q +TKK +V T E+   N RSRSAK+RA
Sbjct: 239 RLVKNFFKEWSNSCLCPPEAFRCTCGNNHEKGQILTKKPLVATPEESKANPRSRSAKMRA 298

Query: 314 GM 315
             
Sbjct: 299 FE 300


>gi|73542671|ref|YP_297191.1| S-adenosyl-methyltransferase MraW [Ralstonia eutropha JMP134]
 gi|88909215|sp|Q46WY6|RSMH_RALEJ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|72120084|gb|AAZ62347.1| methyltransferase [Ralstonia eutropha JMP134]
          Length = 332

 Score =  335 bits (859), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 119/335 (35%), Positives = 184/335 (54%), Gaps = 23/335 (6%)

Query: 9   MSSAIHHTIG--DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIA 63
           MS           H  VLL++ +  L   P  V +D TFG GG+SR+          ++A
Sbjct: 1   MSPTGSPATPALRHRTVLLDEAVEALVWRPDGVYVDGTFGRGGHSRAVLARLGPDGALVA 60

Query: 64  LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGD 122
            D+DP A++           +FS+   +F+ + + +  +G V GV+ DLG+SS QID   
Sbjct: 61  FDKDPAAIAEAGTI---QDARFSIEHESFAAMGERLAGRGHVAGVLLDLGISSPQIDEAA 117

Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF+  GPLDMRM  + GI+A++ + QA  +D+ R++   GEE+ A +IA AIV RR+
Sbjct: 118 RGFSFRFEGPLDMRMDTTRGITAAEWLAQAEEQDIARVIRDYGEERFAVQIAKAIVARRR 177

Query: 182 S----APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
                 P  TT DL++L+ K V   +     PATR+FQALRI +N E+E+L +GL++A  
Sbjct: 178 EPGDGGPLATTADLAALVAKAVKT-REKGQDPATRTFQALRIHINQELEDLERGLKAAYD 236

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP------SNAHPAVFQSITKK 291
            L+ GG L+V+SFHSLEDR+VK+F A+ +         +       ++      + + + 
Sbjct: 237 LLQVGGRLVVISFHSLEDRIVKRFMAAHARPQQDADPALRRAPLRAADLPQPTLRLLGR- 295

Query: 292 VVVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDDS 326
            V P  ++VA N R+RSA +R   +    +    +
Sbjct: 296 -VKPGAQEVADNPRARSAVMRVAEKLAPAASGRGA 329


>gi|291288111|ref|YP_003504927.1| S-adenosyl-methyltransferase MraW [Denitrovibrio acetiphilus DSM
           12809]
 gi|290885271|gb|ADD68971.1| S-adenosyl-methyltransferase MraW [Denitrovibrio acetiphilus DSM
           12809]
          Length = 308

 Score =  335 bits (859), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 103/308 (33%), Positives = 167/308 (54%), Gaps = 10/308 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
            H+PV++ +V+  L   P  + LD T G GG+S +  +       ++ LDRD  AV+  +
Sbjct: 2   KHIPVMIREVLKYLPVDPDGITLDMTGGGGGHSAAMLEKISLKGRLVILDRDLDAVARLK 61

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQKSGP 132
           E  +      ++  + FS     + + G+  V   + D GVS   +   +RGFSF+  GP
Sbjct: 62  ERFKG-TPNVTIAHSNFSDFDRVLGELGISSVTSVLADFGVSLYHLKVAERGFSFRSEGP 120

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+    +SA+DVVN  + ++L+ I+   GEE  A  IA AI + R+    +TT  L
Sbjct: 121 LDMRMNQDDTLSAADVVNSYSRENLSSIIKKYGEENFAWNIAGAIERAREVEKIETTTRL 180

Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           + ++   V    +   I+PAT++FQALRIFVN+E++ + + L   E  +  GG +  +SF
Sbjct: 181 AEIVASAVPRKAQKPGINPATKTFQALRIFVNSELDSIEEMLGKLENYVDEGGRVAFISF 240

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK  F     + +      + + +    F+ IT+K + P ++++  N  SRSA
Sbjct: 241 HSLEDRIVKDAFREFEKECVCPPELPVCNCSKVRTFRQITRKPLEPREDELEMNPLSRSA 300

Query: 310 KLRAGMRT 317
           K+R   R 
Sbjct: 301 KMRVAERV 308


>gi|114777870|ref|ZP_01452801.1| methyltransferase [Mariprofundus ferrooxydans PV-1]
 gi|114551861|gb|EAU54401.1| methyltransferase [Mariprofundus ferrooxydans PV-1]
          Length = 331

 Score =  335 bits (859), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 114/317 (35%), Positives = 173/317 (54%), Gaps = 12/317 (3%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M++ + ++  +H+PVL +  I  +   P    +D TFG GG+SR           ++A D
Sbjct: 1   MATDVEYS--EHIPVLRDAFIDAIFSDPDGCYVDCTFGRGGHSRQLLARLSEKGRLLAFD 58

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGD 122
           RDP AV+ G+E +     +F++  A F++L + +  +G   V G+ FDLGVSS Q+D   
Sbjct: 59  RDPDAVAAGEE-LAQQDARFAIEHADFARLGEVLDARGWCQVTGIGFDLGVSSPQVDQAQ 117

Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF++ GPLDMRM  + G   S  +   + ++L  IL   G+E+ A RIA AI+K   
Sbjct: 118 RGFSFRQDGPLDMRMDTTQGQPLSRRLEHVSERELIDILRRFGDERYAQRIARAILKAMH 177

Query: 182 SAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
                TT DL +     V   ++    HPATR+FQALRI+VN+E++++  G+ +A   L+
Sbjct: 178 DGALTTTSDLENACFHAVPKQARYGSTHPATRTFQALRIWVNDEMQQIDDGISAAVDHLQ 237

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQED 299
            GG L V+SFHS EDR ++    +R           +         + + KK V P + +
Sbjct: 238 PGGRLAVISFHSGEDRRIRDLIEARVHACTCPPQMPVCVCGKKPTMRWLQKKPVRPDEGE 297

Query: 300 VAFNRRSRSAKLRAGMR 316
           VA N RSRS+ LR   R
Sbjct: 298 VAANPRSRSSMLRVAQR 314


>gi|56416788|ref|YP_153862.1| S-adenosyl-methyltransferase MraW [Anaplasma marginale str. St.
           Maries]
 gi|68565444|sp|Q5PAS3|RSMH_ANAMM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|56388020|gb|AAV86607.1| S-adenosyl-methyltransferase [Anaplasma marginale str. St. Maries]
          Length = 291

 Score =  335 bits (859), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 128/304 (42%), Positives = 175/304 (57%), Gaps = 20/304 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV-IALDRDPFAVSCGQETM 78
           H PVLL +V+  L+P  G V +DATFG GGYSR   +    V  A+D+D        E +
Sbjct: 3   HKPVLLNEVVEALSPKDGSVYVDATFGGGGYSRRILETAQCVVYAIDQDVVVKKYFDELL 62

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           + +  + +L  + FS+L++ V   GVD   GVVFDLG S+MQ+    RGFSF  SG LDM
Sbjct: 63  QSFPGRLNLAISRFSKLREVVLSFGVDKVDGVVFDLGTSAMQLADASRGFSFMNSGSLDM 122

Query: 136 RMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM  S +  A+  VN    K++  ++   G E+ + R+A AI+  R+      T DL+++
Sbjct: 123 RMCSSALRDAAMFVNTVPEKEMADVIYQYGGERYSRRVARAIIDARRKCRINNTGDLATI 182

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           I+  V  S+ + I PATR+FQA+RI+VNNE+EEL  GL +A + LK GG ++V SFHSLE
Sbjct: 183 IRSAVPRSRVHPIDPATRTFQAIRIWVNNELEELQAGLETAAEVLKIGGKILVTSFHSLE 242

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           DR+VK  F S                    F  I KK ++PT E+V  N RSRS KLRA 
Sbjct: 243 DRVVKHKFRSLCDMG---------------FSLINKKAIMPTDEEVKNNPRSRSGKLRAI 287

Query: 315 MRTV 318
            R  
Sbjct: 288 ARVE 291


>gi|229820904|ref|YP_002882430.1| S-adenosyl-methyltransferase MraW [Beutenbergia cavernae DSM 12333]
 gi|263447254|sp|C5BW67|RSMH_BEUC1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|229566817|gb|ACQ80668.1| S-adenosyl-methyltransferase MraW [Beutenbergia cavernae DSM 12333]
          Length = 333

 Score =  335 bits (859), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 116/319 (36%), Positives = 175/319 (54%), Gaps = 10/319 (3%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIA 63
           MS+        H PVL ++ + LL PA    G V++DAT G GG+S    +    + V+ 
Sbjct: 1   MSTPDAQAAALHAPVLAQRCVDLLAPALESDGAVLVDATLGMGGHSELVLEQCPHARVLG 60

Query: 64  LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDC 120
           +DRDP A+      +  + ++F+   A + ++ D         V GV+FDLGVSS+Q+D 
Sbjct: 61  IDRDPRALELATARLARFGQRFTPVHAVYDEIDDVARQHAGGAVQGVLFDLGVSSLQLDD 120

Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
             RGF++ +  PLDMRM  + G +A+D++  A+  +L RIL   GEEK A RIA AIV+R
Sbjct: 121 AGRGFAYAQDAPLDMRMDPTTGPTAADLLADADEAELRRILRTYGEEKFAPRIAAAIVRR 180

Query: 180 RQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R++AP + + DL  +++  +   ++    HPA R+FQALRI VN E+E L + L  A  A
Sbjct: 181 REAAPLRRSSDLVEVVRGAIPMSAQRTGGHPAKRTFQALRIAVNRELEVLERALPRAIDA 240

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L  GG ++V S+HSLEDRLVK+  A  +         +         + +T         
Sbjct: 241 LAVGGRIVVESYHSLEDRLVKRELARGATSSAPRHLPVVPEEDQPYLELLTHGAEQADDV 300

Query: 299 DVAFNRRSRSAKLRAGMRT 317
           ++A N R+ S +LRA  R 
Sbjct: 301 ELAANPRAASVRLRAARRI 319


>gi|329940950|ref|ZP_08290230.1| SAM-dependent methyltransferase [Streptomyces griseoaurantiacus
           M045]
 gi|329300244|gb|EGG44142.1| SAM-dependent methyltransferase [Streptomyces griseoaurantiacus
           M045]
          Length = 310

 Score =  334 bits (858), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 119/308 (38%), Positives = 180/308 (58%), Gaps = 10/308 (3%)

Query: 24  LLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETM 78
           +L + + LL P    PG V++D T G GG+S +         ++ALDRD  A+    E +
Sbjct: 2   MLHRCLDLLAPALERPGAVVVDCTLGLGGHSEALLARFPEVRLVALDRDKEALRLSAERL 61

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
             Y E+ +L  A + +L + +   G   V GV+FDLGVSSMQ+D  DRGF++ +  PLDM
Sbjct: 62  APYGERATLVHAVYDELPEVLDRLGLARVQGVLFDLGVSSMQLDEADRGFAYAQDAPLDM 121

Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM  S G SA++V+N     +L RIL   GEEKQA RI  A+V+ R+  PF T+  L  +
Sbjct: 122 RMDQSTGTSAAEVLNTYPPGELVRILRAYGEEKQAKRIVSAVVREREREPFTTSARLVEV 181

Query: 195 IQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           I+  +   +K    +PA R+FQALRI VN E+  L + + +A +AL  GG + V+++HSL
Sbjct: 182 IRDALPQAAKRTGGNPAKRTFQALRIEVNGELTVLERAIPAAVRALDVGGRIAVLAYHSL 241

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           EDRLVK+ FA+ +         +    +    + +T+   +PT+E++A NRR+  A+LR 
Sbjct: 242 EDRLVKQVFAAGAAGTAPPGLPVVPERYQPRLKLLTRGAELPTEEEIAENRRAAPARLRG 301

Query: 314 GMRTVERS 321
            +R  E +
Sbjct: 302 ALRIREDA 309


>gi|34540382|ref|NP_904861.1| S-adenosyl-methyltransferase MraW [Porphyromonas gingivalis W83]
 gi|42559440|sp|Q7MWN0|RSMH_PORGI RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|34396695|gb|AAQ65760.1| S-adenosyl-methyltransferase MraW [Porphyromonas gingivalis W83]
          Length = 311

 Score =  334 bits (858), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 100/308 (32%), Positives = 158/308 (51%), Gaps = 17/308 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQE 76
           H+PV+L + +  L   P    +D TFG GG+SR+          +   D+D  A     +
Sbjct: 11  HIPVMLGECLEGLRIDPDGCYVDVTFGGGGHSRAIVEKLSSKGRLYGFDQDADACRNILQ 70

Query: 77  TMRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                 E+F+   + F  L +++    + GVDG++ DLGVSS   D  +RGFSF+   PL
Sbjct: 71  -----DERFTFVTSNFRYLANFMDYYGEDGVDGILADLGVSSHHFDEEERGFSFRSESPL 125

Query: 134 -DMRMSCSGISASD-VVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS--APFQTTQ 189
            DMRM+      +  ++N+ +   L+ +    GE KQA R A +IV  R+S     QT  
Sbjct: 126 LDMRMNARAGRNAAAILNEYDASSLSALFYHYGELKQARRFAASIVHYRESLSGGLQTVG 185

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            L   ++  +   +  +       FQALRI VN+E+  L Q L +A   L++GG L+V++
Sbjct: 186 QLLEAVRGLISPREEKK--QLACIFQALRIEVNDELGALQQMLEAALGCLRSGGRLVVMT 243

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           +HSLEDR+VK      + K      +    A  + +Q IT+K +  + ++++ N RSRSA
Sbjct: 244 YHSLEDRMVKNVLRYGTVKAPDEDSLRLYGAPQSPWQQITRKPLTASTKELSDNPRSRSA 303

Query: 310 KLRAGMRT 317
           KLR   + 
Sbjct: 304 KLRIAEKI 311


>gi|310823496|ref|YP_003955854.1| s-adenosyl-l-methionine-dependent methyltransferase mraw
           [Stigmatella aurantiaca DW4/3-1]
 gi|309396568|gb|ADO74027.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Stigmatella aurantiaca DW4/3-1]
          Length = 301

 Score =  334 bits (858), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 115/302 (38%), Positives = 165/302 (54%), Gaps = 8/302 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H  VLL + + LL P  GKVILD T G GG++ +    G+ VI +DRDP A++     + 
Sbjct: 5   HQTVLLAEAVQLLQPGVGKVILDGTLGGGGHTEALLARGATVIGVDRDPVALAAATARLG 64

Query: 80  DYKEQFSLFQATFSQLQDYVPDK-GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138
            +   F      F +L     D   VDGV+ DLGVSS Q+D  +RGFSF   GPLDMRM 
Sbjct: 65  GHAH-FQARAGNFGELPRVAADVLPVDGVLVDLGVSSPQLDVAERGFSFNHDGPLDMRMG 123

Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198
             G +A++++ Q + ++L RI+  LGEE  +  IA  + +         T + +  +++ 
Sbjct: 124 PEGRTAAELIAQEDERELARIIYELGEESFSRPIARELKRALP----TRTLEAAEAVKRA 179

Query: 199 VYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRL 257
           V       RIH AT++FQALR+ VN E+E L   L +  + LK GG   V++FHSLEDR 
Sbjct: 180 VPRKAWPKRIHVATKTFQALRMAVNGELEALDALLGALPRLLKVGGRAAVIAFHSLEDRK 239

Query: 258 VKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           VK+ F +  G         + +   P  F  +TKK V  ++++V  N RSRSA LRA  +
Sbjct: 240 VKEAFRNLVGACRCPPGLPVCACGGPGDFAPLTKKAVSASEQEVELNPRSRSAHLRAVEK 299

Query: 317 TV 318
             
Sbjct: 300 IR 301


>gi|94312067|ref|YP_585277.1| S-adenosyl-methyltransferase MraW [Cupriavidus metallidurans CH34]
 gi|123259838|sp|Q1LIL8|RSMH_RALME RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|93355919|gb|ABF10008.1| S-adenosyl-dependent methyltransferase activity on membrane-located
           substrates [Cupriavidus metallidurans CH34]
          Length = 325

 Score =  334 bits (858), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 119/328 (36%), Positives = 187/328 (57%), Gaps = 21/328 (6%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDR 66
           + +   T   H  VLL++ +  L   P    +D TFG GG+SR+          ++A D+
Sbjct: 4   TESPGTTTLRHRTVLLDEAVDALVWRPDGAYVDGTFGRGGHSRAVLARLGPAGTLVAFDK 63

Query: 67  DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGF 125
           DP A++           +FS+  A+F+++ D +  +G V GV+ DLG+SS QID   RGF
Sbjct: 64  DPAAIAEAGTI---KDARFSIEHASFAEMGDRLAGRGPVAGVLLDLGISSPQIDEAARGF 120

Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-- 182
           SF+  GPLDMRM  + GI+A++ + QA+ +D+ R++   GEE+ A +IA AIV RR+   
Sbjct: 121 SFRFEGPLDMRMDTTRGITAAEWLAQADEQDIARVIRDYGEERFALQIAKAIVARRRESG 180

Query: 183 --APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
                 TT DL++L+ K V   +     PATR+FQALRI++N E+E+L +GL++A + L+
Sbjct: 181 DGGALATTSDLAALVAKAVKT-REKGQDPATRTFQALRIYINQELEDLERGLKAAYELLQ 239

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP------SNAHPAVFQSITKKVVV 294
            GG L+V+SFHSLEDR+VK+F  + +         +       ++      + + +    
Sbjct: 240 VGGRLVVISFHSLEDRIVKRFMQAHARPERDADPALRRAPLRAADLPQPTMKLLGR--FK 297

Query: 295 PTQEDVAFNRRSRSAKLRAGMRTVERSI 322
           P  E+VA N R+RSA +R   +  E+S 
Sbjct: 298 PGAEEVAGNPRARSAVMRVAEKLGEQSA 325


>gi|222112157|ref|YP_002554421.1| s-adenosyl-methyltransferase mraw [Acidovorax ebreus TPSY]
 gi|263447303|sp|B9MFS0|RSMH_ACIET RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|221731601|gb|ACM34421.1| S-adenosyl-methyltransferase MraW [Acidovorax ebreus TPSY]
          Length = 308

 Score =  334 bits (858), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 118/310 (38%), Positives = 174/310 (56%), Gaps = 16/310 (5%)

Query: 20  HVPVLLEKVIALL---NPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSC 73
           H  VLL++ +  L     AP    +D TFG GG+SR   +       ++A D+D  A+  
Sbjct: 7   HTTVLLDEAVHALLGDGDAPAGTFVDGTFGRGGHSRLILQRLGPQGRLVAFDKDTEAIQA 66

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                R    +FS+    FS L + +P   V GV+ DLGVSS QID   RGFSF+  GPL
Sbjct: 67  A---ARITDARFSIRHQGFSHLGE-LPAASVSGVLLDLGVSSPQIDDPQRGFSFRFDGPL 122

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR-QSAPFQTTQDL 191
           DMRM  + G S ++ +  A    +  ++   GEE+ A  IA AIV RR +  P  +T +L
Sbjct: 123 DMRMDTTRGQSVAEWLADAEAAQIAEVIRDYGEERFAGPIAKAIVARRTERGPISSTAEL 182

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++   V   +  + +PATR+FQALRIF+N E+EEL Q L  + + L+ GG L+V+SFH
Sbjct: 183 ADIVAGAVKTREPGQ-NPATRTFQALRIFINAELEELQQALEGSLRVLRPGGRLVVISFH 241

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+VK+F A  S +V   R    +   P   +++ +  + P+ ++VA N R+RSA +
Sbjct: 242 SLEDRIVKQFIAQHSKEVY-DRRAPFAPPQPMRLKALER--IKPSTDEVAANARARSAVM 298

Query: 312 RAGMRTVERS 321
           R   RT   +
Sbjct: 299 RVAERTEVPA 308


>gi|332518989|ref|ZP_08395456.1| S-adenosyl-methyltransferase MraW [Lacinutrix algicola 5H-3-7-4]
 gi|332044837|gb|EGI81030.1| S-adenosyl-methyltransferase MraW [Lacinutrix algicola 5H-3-7-4]
          Length = 300

 Score =  334 bits (858), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 100/309 (32%), Positives = 165/309 (53%), Gaps = 17/309 (5%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72
            +  H PVLL + +  L+  P  V +D TFG GG+S+   K       + A D+D  A+ 
Sbjct: 2   EMEYHNPVLLNETVDGLDIKPNGVYVDVTFGGGGHSKEILKRLGEHGKLFAFDQDADALE 61

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQK 129
                 +    +F+L    F  ++ ++   GV   DG++ D GVSS Q D  +RGFS + 
Sbjct: 62  N-----KIDDPRFTLIHENFRYIKRFLRFHGVKEVDGILADFGVSSHQFDVAERGFSTRF 116

Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           +  LDMRM+  + +SA  VVN+ + + + ++L   GE + A  +A  IV  R++   +T+
Sbjct: 117 AADLDMRMNQKNDLSAFHVVNEYDEEQIKQVLLQYGELRAAPAMARLIVDYRKNEVIKTS 176

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L ++++K +     N+I    + +QA+RI VN EIE L + L    + LK  G L ++
Sbjct: 177 DQLKTILKKFLSPKHENKI--LAQIYQAIRIEVNQEIEALKEFLSQTPEILKPNGRLSLI 234

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           S+HSLEDRLVK+F  +   +    R +      P   + +  K+++P+ E++  N R+RS
Sbjct: 235 SYHSLEDRLVKRFIRNGLFEGEPERDVFGRFEVP--LKKV-GKLIIPSAEEIKINNRARS 291

Query: 309 AKLRAGMRT 317
           AKLR   + 
Sbjct: 292 AKLRIAEKI 300


>gi|269958801|ref|YP_003328589.1| S-adenosyl-methyltransferase [Anaplasma centrale str. Israel]
 gi|269848631|gb|ACZ49275.1| S-adenosyl-methyltransferase [Anaplasma centrale str. Israel]
          Length = 291

 Score =  334 bits (857), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 129/304 (42%), Positives = 181/304 (59%), Gaps = 20/304 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQETM 78
           H PVLL +V+  L+P  GK+ +DATFG GGYSR   +M    V A+D+D        E +
Sbjct: 3   HKPVLLNEVMETLSPQDGKIYIDATFGGGGYSRKMLEMARCAVYAIDQDITVKEYFDELL 62

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           + +  + SL  + FS+L++ +   G   VDG+VFDLG S+MQ+    RGFSF KSG LDM
Sbjct: 63  QSFPGRLSLAISKFSRLREVMLSFGINRVDGIVFDLGTSAMQLADPSRGFSFMKSGSLDM 122

Query: 136 RMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM  S   +A+  VN    K++  I+   G E+++ ++A AIV  RQ     +T+DL+ +
Sbjct: 123 RMCSSSQRNAALFVNTVLEKEMADIIYHYGGERRSRKVARAIVDARQKRKINSTEDLAEI 182

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           I+  V  S+ + I PATR+FQA+RI+VNNE+EEL  GL +A K L+ GG ++V SFHSLE
Sbjct: 183 IRSVVPRSRVHPIDPATRTFQAIRIWVNNELEELQAGLEAASKLLRVGGKILVTSFHSLE 242

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           DR+VK+ F S                    F  + KK + PT E++  N RSRS KLRA 
Sbjct: 243 DRVVKQKFKSLCDMG---------------FSLVNKKAIRPTDEEIRDNPRSRSGKLRAI 287

Query: 315 MRTV 318
           +R  
Sbjct: 288 VRVE 291


>gi|119897167|ref|YP_932380.1| S-adenosyl-methyltransferase MraW [Azoarcus sp. BH72]
 gi|263446774|sp|A1K3T8|RSMH_AZOSB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|119669580|emb|CAL93493.1| SAM dependent methyltransferase [Azoarcus sp. BH72]
          Length = 312

 Score =  334 bits (857), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 119/305 (39%), Positives = 167/305 (54%), Gaps = 12/305 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HV VLL + +  L   P  + +D TFG GG+SR+       G  +IA DRDP A++ GQ 
Sbjct: 7   HVSVLLTEAVDALAIKPEGIYVDGTFGRGGHSRAVLARLGAGGRLIAFDRDPAAIAAGQ- 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +  L  A FS+    +   GV   DGV+ DLGVSS Q+D   RG SF+   PL
Sbjct: 66  --AIADPRLELVHAPFSEFAVVLDRLGVSAVDGVLLDLGVSSPQLDDASRGMSFRFDAPL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  S G + ++ + +A+V ++T ++   GEE+ A  IA AI   R      TT  L+
Sbjct: 124 DMRMDTSRGRTVAEWLAEASVAEITEVIRDYGEERFAYAIAKAIAAARTGGAIATTGQLA 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           ++++K V   +  + HPATRSFQALRIF+N E+EEL   L      L  GG L+V+SFHS
Sbjct: 184 AIVEKAVRTREPGQ-HPATRSFQALRIFINQELEELTTVLPDCVARLSEGGRLVVISFHS 242

Query: 253 LEDRLVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK+F    +    +  R  + +   P     +  K   P + +VA N R+RSA +
Sbjct: 243 LEDRIVKRFLRDEARPPQLPSRLPVRAADLPPPRLQLVGKAQRPGEAEVAANPRARSAVM 302

Query: 312 RAGMR 316
           R   R
Sbjct: 303 RVAER 307


>gi|332292526|ref|YP_004431135.1| S-adenosyl-methyltransferase MraW [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332170612|gb|AEE19867.1| S-adenosyl-methyltransferase MraW [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 301

 Score =  334 bits (857), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 101/309 (32%), Positives = 164/309 (53%), Gaps = 17/309 (5%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAV 71
           + +  H PVLL++ +  LN  P  V +D TFG GG+SR           +   D+D  A 
Sbjct: 2   YQMDYHNPVLLKETVDGLNIKPDGVYVDVTFGGGGHSREILSRLGPEGKLYGFDQDVDAQ 61

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQ 128
               E      E+F+L    F  ++ ++   GV   DG++ D GVSS Q D  +RGFS +
Sbjct: 62  ENIIE-----DERFTLIPENFRYIKRFMRFHGVKKVDGILGDFGVSSHQFDVAERGFSTR 116

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
               LDMRM+    +SA +V+N    +DL ++    GE + A ++A  IV+ R S   +T
Sbjct: 117 FESDLDMRMNQKDTLSAYNVINDYEEEDLRQVFWQYGELRNAPKLASTIVQERNSQFIKT 176

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           ++ L  ++   +   + ++I    + +QA+RI VN EIE L + L   E+ L  GG + +
Sbjct: 177 SEHLKKVLAPFLPKHREHKI--LAQIYQAIRIEVNQEIEVLKEFLMQTEQLLDTGGRISL 234

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +S+HSLEDRLVK++  S   +    + M  +   P  F+ +  K+++P  +++  N R+R
Sbjct: 235 ISYHSLEDRLVKRYIRSGMFEGEPEKDMYGNFEVP--FKKV-GKLIIPDSKEIKLNNRAR 291

Query: 308 SAKLRAGMR 316
           SAKLR   +
Sbjct: 292 SAKLRIAEK 300


>gi|197294245|ref|YP_001798786.1| S-adenosyl-methyltransferase MraW [Candidatus Phytoplasma
           australiense]
 gi|262824821|sp|B1V910|RSMH_PHYAS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|171853572|emb|CAM11442.1| S-adenosyl-methyltransferase [Candidatus Phytoplasma australiense]
          Length = 303

 Score =  334 bits (857), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 117/306 (38%), Positives = 173/306 (56%), Gaps = 14/306 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H+ VL E+ I+ LN  P  V +DAT G GG++ S      +  + + D+D  A S  Q+ 
Sbjct: 5   HISVLKEEAISFLNINPNGVYVDATLGQGGHTLSILNHLQDGFLYSFDQDLKACSDIQKK 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +        +  + FS L+  +  + V   DG++FDLG+SS QID   RGFS+  + PLD
Sbjct: 65  LNP-NWPIEIIHSNFSNLKLELAKRNVFQLDGILFDLGISSCQIDDSQRGFSYLHNAPLD 123

Query: 135 MRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MR      ++A ++VN  + + L  I  I GEEK+A+ IA  I+K R   P +T+ DL +
Sbjct: 124 MRFDNRQKLTAQEIVNFYSFEKLKNIFHIYGEEKKAALIAKQIIKNR---PLKTSYDLVA 180

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           +   T  F K ++ H A + FQALRI VN E+E L Q L  + + LK  G ++V+SFHSL
Sbjct: 181 I---TDMFYKYHKGHSAKKIFQALRIEVNQELEVLKQALSQSLELLKKDGSIVVISFHSL 237

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHP-AVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           EDR+VK FF   S      +  I S  +P    + ITKK  +P++ ++  N RS SAKLR
Sbjct: 238 EDRIVKHFFKKNSVFEFPKKLPIMSVDYPQPALRIITKKPCIPSEVEMKNNPRSISAKLR 297

Query: 313 AGMRTV 318
           A ++ +
Sbjct: 298 AAVKNI 303


>gi|134102314|ref|YP_001107975.1| S-adenosyl-methyltransferase MraW [Saccharopolyspora erythraea NRRL
           2338]
 gi|291003724|ref|ZP_06561697.1| S-adenosyl-methyltransferase [Saccharopolyspora erythraea NRRL
           2338]
 gi|262826346|sp|A4FLX5|RSMH_SACEN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|133914937|emb|CAM05050.1| S-adenosyl-methyltransferase [Saccharopolyspora erythraea NRRL
           2338]
          Length = 330

 Score =  334 bits (857), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 118/310 (38%), Positives = 175/310 (56%), Gaps = 10/310 (3%)

Query: 20  HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCG 74
           HVPV++E+ + LL P       V++DAT G GG+S +       +  + LDRDP A+   
Sbjct: 19  HVPVMMERTLELLAPALSKGPAVVVDATLGMGGHSEALLAAHPELTLVGLDRDPDALRLA 78

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            E +  + ++  L  A + +  + +       VDG +FDLGVSS+Q+D  DRGF++    
Sbjct: 79  GERLAPHSDRVHLVHAVYDEWAEALAGLSLSKVDGALFDLGVSSLQLDETDRGFAYAHDA 138

Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM      +A+DV+N  +  +LTR+L   GEEK A+RIA AIV+ R  APF  +  
Sbjct: 139 PLDMRMDSGAPRTAADVLNTYSAGELTRVLREYGEEKFAARIAAAIVRERAKAPFDRSGR 198

Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  L+   V  + +    HPA R+FQALRI VN E+E L + L +A  +L  GG ++V+S
Sbjct: 199 LVELLYDAVPAASRRTGGHPAKRTFQALRIEVNAELEVLGRALPAALDSLAVGGRMVVMS 258

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           +HSLEDR+VK+ FA R+     V   +    H    + +T+   + +  + A N R+ S 
Sbjct: 259 YHSLEDRMVKRAFAERAKSKTPVDLPVELPGHGPEIRLLTRGAELASDAETAANPRAASV 318

Query: 310 KLRAGMRTVE 319
           +LRA  R  E
Sbjct: 319 RLRAAERIKE 328


>gi|298245975|ref|ZP_06969781.1| S-adenosyl-methyltransferase MraW [Ktedonobacter racemifer DSM
           44963]
 gi|297553456|gb|EFH87321.1| S-adenosyl-methyltransferase MraW [Ktedonobacter racemifer DSM
           44963]
          Length = 320

 Score =  334 bits (857), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 104/305 (34%), Positives = 158/305 (51%), Gaps = 14/305 (4%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69
           + +    HV V+LE+V+  L P PG   +D T G GG++    +       V+ +D D  
Sbjct: 1   MENEQTRHVSVMLEEVMEYLRPQPGGHYIDGTLGGGGHTSVLLERSAPDGKVLGIDTDSK 60

Query: 70  AVSCGQETMRD--YKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRG 124
           A +  Q  +     + +  L    FS ++    +     VDG++ DLG SS Q+D   RG
Sbjct: 61  AQARVQARLSKEVAEGRLILSHGNFSDMERLAQEAQFTSVDGILLDLGFSSDQMDDPQRG 120

Query: 125 FSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           FSF   GPLDMR+S    ++A+D+VN    ++L  I    GEE+++ +IA  I + RQ  
Sbjct: 121 FSFSADGPLDMRLSQDLSLTAADLVNNTGEEELADIFWRYGEERRSRQIARRIGRERQKR 180

Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
               T  L+ +    V + K   IHPATR FQALRI VN E+E L   L      L+AGG
Sbjct: 181 AITRTSQLAEIAAAGVPY-KYGAIHPATRVFQALRIAVNQELESLETALPQMLSLLQAGG 239

Query: 244 ---LLIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQED 299
               +++++FHSLEDR+VK+F    +   +      +    H A  + +T K +VP +++
Sbjct: 240 KQGRMVIIAFHSLEDRIVKEFLRREARDCLCPPRIPMCICGHKASLRILTNKPIVPGEQE 299

Query: 300 VAFNR 304
           VA N 
Sbjct: 300 VAANP 304


>gi|319941799|ref|ZP_08016121.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Sutterella wadsworthensis 3_1_45B]
 gi|319804732|gb|EFW01599.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Sutterella wadsworthensis 3_1_45B]
          Length = 315

 Score =  334 bits (857), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 127/316 (40%), Positives = 180/316 (56%), Gaps = 17/316 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H+PVL  +    L   P  + +D TFG GG+SR   +       +IA DRDP AV+    
Sbjct: 6   HLPVLSREAPEALVARPDGLYVDGTFGRGGHSRLILERLAQQGRLIAFDRDPEAVAAAAA 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +F +  A FS +++ + D G   VDG+  D+GVSS QID   RGFSF+  GPL
Sbjct: 66  I---KDPRFQIVHAPFSAMKERLGDLGIRQVDGIFLDIGVSSPQIDDPSRGFSFRFEGPL 122

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  S G +A++ + +A+V+++  +L   GEE+ A RIA AIV+ R  AP  TT  L+
Sbjct: 123 DMRMDTSCGETAAEWLARASVEEIAEVLADFGEERFAHRIARAIVEARSRAPITTTGALA 182

Query: 193 SLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            L++  V  ++ +   HPATR+FQA+RI VN+E++EL   L SA   L   G L V+SFH
Sbjct: 183 KLVEAAVPKNRRDAAQHPATRTFQAVRIQVNHELDELKTTLESAGALLAPAGRLAVISFH 242

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNA---HPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SLEDR+VK+FF  R      +   +P  A       F  + +  ++PT+ +   N R+RS
Sbjct: 243 SLEDRIVKRFFEKRLHPDRDLDPRLPMPAGFNAQPWFCDVIR--ILPTKSEAESNPRARS 300

Query: 309 AKLRAGMRTVERSIED 324
           + LR G RT  R  ED
Sbjct: 301 SVLRVGTRTA-RLWED 315


>gi|297559864|ref|YP_003678838.1| S-adenosyl-methyltransferase MraW [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296844312|gb|ADH66332.1| S-adenosyl-methyltransferase MraW [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 357

 Score =  334 bits (857), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 110/311 (35%), Positives = 175/311 (56%), Gaps = 10/311 (3%)

Query: 20  HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74
           HVPV+L++++ LL P    PG V++D T G GG+S +  +   G  ++ +DRD  A+   
Sbjct: 45  HVPVMLDRIVELLAPALERPGAVLVDGTLGLGGHSEALLRACPGMRLVGVDRDTTALERS 104

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQKSG 131
              +  Y ++     A +S +   + + G      V+ DLGVSS Q+D  DRGF++    
Sbjct: 105 AARLAPYADRTHFVHAVYSDIPRALDEAGAAEADAVLLDLGVSSPQLDETDRGFAYAHDA 164

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM     ++A++VVN   V +LTR+L   GEE+ ASR+A AI ++R  AP ++T+ 
Sbjct: 165 PLDMRMDRDQSLTAAEVVNTYPVAELTRVLRTYGEERFASRVARAIERQRAQAPIESTRA 224

Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ L+++ +  + +    HPA R+FQ LRI VN E+  L + L +A   L  GG + V+S
Sbjct: 225 LAELVREAIPAATRRTGGHPAKRAFQGLRIEVNAELSILERALPAAIARLAGGGRVAVLS 284

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           +HSLEDR+ K+  A+ +         +P        + +T+   +PT E+   N R++SA
Sbjct: 285 YHSLEDRMTKRALAALATDTTPADLPVPLPERQPELRLLTRGAELPTDEENERNPRAQSA 344

Query: 310 KLRAGMRTVER 320
           +LRA  R    
Sbjct: 345 RLRAAERVRPP 355


>gi|94984873|ref|YP_604237.1| methyltransferase [Deinococcus geothermalis DSM 11300]
 gi|263446197|sp|Q1J0B6|RSMH_DEIGD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|94555154|gb|ABF45068.1| methyltransferase [Deinococcus geothermalis DSM 11300]
          Length = 308

 Score =  334 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 114/293 (38%), Positives = 172/293 (58%), Gaps = 24/293 (8%)

Query: 36  PGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95
           PG+VI+D T G  G++R   + G++VI +D+DP+A++  +E       Q ++ +  +  +
Sbjct: 34  PGRVIVDGTLGGAGHTRLLLEAGASVIGIDQDPYALNRARE---AQLPQLTVLEGNYRDM 90

Query: 96  QDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQAN 152
           ++ +   GV   DGV+ D+GVSS Q+D   RGFS+    PLDMRM+ SG SA++VVN   
Sbjct: 91  RELLAGIGVTQVDGVLLDIGVSSFQLDDAARGFSYHTDAPLDMRMAQSGESAAEVVNGYP 150

Query: 153 VKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATR 212
            ++L  I+   GEE+ + RIA AIV+ R  AP Q+T  L+ +I++      +  IHPA R
Sbjct: 151 EEELAAIIYEYGEERHSRRIARAIVQARTQAPIQSTVQLAEIIKRAYP-GFSKGIHPARR 209

Query: 213 SFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAV 272
           +FQALRI VN+E+  L  GLR+AE  L  GG L V++FHSLEDR+VK+F  +        
Sbjct: 210 TFQALRIHVNDELGALRDGLRAAEALLTPGGRLAVIAFHSLEDRIVKRFLRAS------- 262

Query: 273 RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDD 325
                        +S+TK+ V  ++E+   N R+RSAKLRA  +        +
Sbjct: 263 ----------PTLKSLTKRPVEASEEERGRNPRARSAKLRAAEKVAAPEGLPE 305


>gi|332527095|ref|ZP_08403175.1| 16S rRNA m(4)C1402 methyltranserfase [Rubrivivax benzoatilyticus
           JA2]
 gi|332111526|gb|EGJ11508.1| 16S rRNA m(4)C1402 methyltranserfase [Rubrivivax benzoatilyticus
           JA2]
          Length = 313

 Score =  334 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 121/319 (37%), Positives = 180/319 (56%), Gaps = 15/319 (4%)

Query: 11  SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRD 67
           +A+  T   H  VLL + +  L      + +D TFG GG++R+     S    V+A DRD
Sbjct: 2   TAVTQTGRAHTTVLLAEAVEALVTQADGLYVDGTFGRGGHTRALLAALSPRARVLAFDRD 61

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRG 124
           P A++           +F++  A+F  +++ +  +GV    GV+ DLGVSS QID  +RG
Sbjct: 62  PEAIAAAA---AIDDPRFTICHASFGAMREELAARGVGQVQGVLLDLGVSSPQIDTPERG 118

Query: 125 FSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           FSF+   PLDMRM  + G +A+D + +A+ + + +++   GEE+ A +IA A+V RRQ  
Sbjct: 119 FSFRFDAPLDMRMDTTRGETAADFLARADERHIAQVIRDYGEERFALQIAKAVVARRQGG 178

Query: 184 -PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
              +TT +LS+L+ + V   +  +  PATR+FQALRIFVN E+E L QGL +A + L  G
Sbjct: 179 DQLRTTGELSALVARAVKTREPGQ-DPATRTFQALRIFVNAELEALEQGLSAALQLLAPG 237

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G L+V+SFHSLEDR+VK F    S      R  +   A P   +      V P  ++V  
Sbjct: 238 GRLVVISFHSLEDRIVKNFITRESRDEFDRRAPM---APPRALKLKALARVKPGDDEVRA 294

Query: 303 NRRSRSAKLRAGMRTVERS 321
           N R+RSA +R   RT   +
Sbjct: 295 NPRARSAVMRVAERTEVPA 313


>gi|219682152|ref|YP_002468536.1| hypothetical protein BUAPTUC7_222 [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|254813208|sp|B8D7C6|RSMH_BUCAT RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|219621885|gb|ACL30041.1| hypothetical protein BUAPTUC7_222 [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
          Length = 312

 Score =  334 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 122/312 (39%), Positives = 187/312 (59%), Gaps = 19/312 (6%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSC 73
           I  H+PV+ +++I  L      + +D+TFG GG+S    K       + ++DRDP A S 
Sbjct: 4   IFKHIPVMKKELIDSLKIKKNGIYIDSTFGTGGHSNEILKKLGQSGRLYSIDRDPIAFSI 63

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQK 129
           G +       +F +    FS+L D+  ++     V+G++FDLGVSS+QID   RGFSF+ 
Sbjct: 64  GSKI---KDSRFHIINENFSKLLDFAKNEKIIGKVNGIIFDLGVSSIQIDDYRRGFSFKN 120

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM+ + GISAS+ + ++NVK+++ +L   GEE+ + +IA+AI +R Q     +T
Sbjct: 121 DGPLDMRMNPNYGISASEWLFESNVKEISFVLKNFGEERFSRKIAYAIKRRSQIKKITST 180

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+++I+KT+   KN   HPA RSFQA+RI++N E+EE+ + L S  K LK GG + ++
Sbjct: 181 LELANIIKKTIPT-KNKFKHPARRSFQAIRIYINQELEEIHKALESTLKILKPGGRISII 239

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFN 303
           SFHSLEDRLVKKF    S K +    M  +            + I +  ++PTQ ++  N
Sbjct: 240 SFHSLEDRLVKKFMIKNSTKAIIPYGMPITEEQLNRLTTCKLKIINR--ILPTQNEINNN 297

Query: 304 RRSRSAKLRAGM 315
            R+RS+ LR   
Sbjct: 298 PRARSSVLRIAE 309


>gi|257056486|ref|YP_003134318.1| S-adenosyl-methyltransferase MraW [Saccharomonospora viridis DSM
           43017]
 gi|256586358|gb|ACU97491.1| S-adenosyl-methyltransferase MraW [Saccharomonospora viridis DSM
           43017]
          Length = 327

 Score =  334 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 110/310 (35%), Positives = 175/310 (56%), Gaps = 10/310 (3%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCG 74
           H+PVL+++V+ L  PA      +++D T G GG++ +       +  I LDRDP A+   
Sbjct: 16  HLPVLVDRVLELFEPAVSDRDAILVDTTLGLGGHTEALLSAYPRLRVIGLDRDPEALERS 75

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +  +  Y  +       + +++D + +     V+GV+ DLGVSSMQ+D  DRGF++ ++ 
Sbjct: 76  RRRLARYGSRVQFVHTVYDRIRDVLAELDVPAVEGVLMDLGVSSMQLDRDDRGFAYARNA 135

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + GI+A+DV+N  +V +LTR+L   GEE+ A RIA A+V  R+  PF T++ 
Sbjct: 136 PLDMRMDPTTGITAADVLNTYSVDELTRVLRDYGEERFARRIAKAVVAERKREPFDTSER 195

Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  L+  TV    +    HPA R+FQALRI VN E++ L   + +A  +L  GG ++V S
Sbjct: 196 LVRLLYATVPAGSRRTGGHPAKRTFQALRIEVNGELDILRAAVPAAIDSLAVGGRIVVES 255

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           +HSLEDR+VK+     +         +    H    + +T+      +E++  N R+ S 
Sbjct: 256 YHSLEDRIVKQALTRAATSRTPEGLPVELPGHGPKLRLLTRGAEKADEEEIRRNPRAASV 315

Query: 310 KLRAGMRTVE 319
           +LRA  +  E
Sbjct: 316 RLRAAEKRGE 325


>gi|319944706|ref|ZP_08018970.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Lautropia
           mirabilis ATCC 51599]
 gi|319741955|gb|EFV94378.1| S-adenosyl-L-methionine-dependent methyltransferase MraW [Lautropia
           mirabilis ATCC 51599]
          Length = 329

 Score =  333 bits (855), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 123/313 (39%), Positives = 180/313 (57%), Gaps = 14/313 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72
           + G H+PVLL + +A L   P  V +D TFG GG+SR   +       ++ALDRDP AV+
Sbjct: 13  SSGAHLPVLLHEAVAALAIRPDGVYVDGTFGRGGHSRHILQALGPKGRLLALDRDPEAVA 72

Query: 73  CGQETMRDYKE-QFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQ 128
             +   ++  + +F +  A FS L + +   G   +DG++ DLG+SS Q+D   RGFSF 
Sbjct: 73  AARAWKQESGDARFEIVHARFSSLDEVLDAHGLTHIDGLLLDLGISSPQVDDPRRGFSFT 132

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS---AP 184
             GPLDMRM  + G+SA + + QA V+ +T +L   G+E+ A  IA  I  RR       
Sbjct: 133 GDGPLDMRMDPTVGLSAHEWLMQATVEQITEVLKRDGDERFAFPIAKEIAARRDQTDGQG 192

Query: 185 FQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
            QTT+ L+ L+   +    KN+  +PATR+FQALRI  N+E  ELA+ L  A + L  GG
Sbjct: 193 IQTTRQLADLVAGVIRRRQKNSAKNPATRTFQALRIHTNDEGGELARVLNVALRRLATGG 252

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            L V+SFHS EDR+VK+F A  +G+      +  +     + +S+ +  V+P + +VA N
Sbjct: 253 RLSVISFHSNEDRVVKQFIARHAGRDAERHPVTGAWLAEPLLKSLGR--VLPGEAEVATN 310

Query: 304 RRSRSAKLRAGMR 316
            R+RSA LR   R
Sbjct: 311 PRARSAILRVAER 323


>gi|289522914|ref|ZP_06439768.1| S-adenosyl-methyltransferase MraW [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
 gi|289503938|gb|EFD25102.1| S-adenosyl-methyltransferase MraW [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
          Length = 300

 Score =  333 bits (855), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 112/308 (36%), Positives = 180/308 (58%), Gaps = 25/308 (8%)

Query: 20  HVPVLLEKVIALLNPAPG-KVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76
           HVPVL  ++I +L+ +   K+++DAT G GG++ +      +  ++ LD+D  A+    E
Sbjct: 6   HVPVLTNEIINILSLSDDLKLVVDATVGLGGHAYALLSTFPDIKLLGLDQDETALEIAYE 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            ++ + E+  L ++ F  + D V +      VD ++FDLGVSS+QID  +RGFSF K GP
Sbjct: 66  RLKPFGERVLLVKSNFRFIDDVVKNHFRSVAVDAILFDLGVSSLQIDDEERGFSFNKPGP 125

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP-FQTTQD 190
           +DMRM     ++A D++N   +KDL+ I    GEE+ + +IA AIV+ R+      +T +
Sbjct: 126 IDMRMDREAKVTAFDIINNYCIKDLSDIFYKYGEERYSRQIAKAIVRYREQKGLIASTAE 185

Query: 191 LSSLIQKTVYFS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L  +I++ +     +    HPA R FQALRI VN+E+  L  GL+++   L++GG LIV+
Sbjct: 186 LVEIIRRALPAKIQRQMGKHPARRVFQALRIVVNDELGALESGLKNSLGCLRSGGHLIVI 245

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           S+HSLEDR+VK  F     + +               +  +KK ++P +E++  N RSRS
Sbjct: 246 SYHSLEDRIVKHSFKDWEKEGIG--------------KIFSKKPILPKREEIEGNPRSRS 291

Query: 309 AKLRAGMR 316
           AKLR  ++
Sbjct: 292 AKLRVLIK 299


>gi|114321350|ref|YP_743033.1| S-adenosyl-methyltransferase MraW [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|123127253|sp|Q0A6J4|RSMH_ALHEH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|114227744|gb|ABI57543.1| S-adenosyl-methyltransferase MraW [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 317

 Score =  333 bits (855), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 112/307 (36%), Positives = 165/307 (53%), Gaps = 12/307 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H PVLL++ +  L   P  V +D TFG GG++            +  +DRDP A++  + 
Sbjct: 11  HRPVLLDEALDALAIRPHGVYVDGTFGRGGHAAGILARLGPEGRLWLVDRDPEAIAVARA 70

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              D   + ++    F +L   +   G    VDG++ DLGVSS Q+D  +RGFSF + GP
Sbjct: 71  RHGD-DPRCTIAHGRFDELPGRLEAAGLLHRVDGLLLDLGVSSPQLDSAERGFSFMREGP 129

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF-QTTQD 190
           LDMRM  S G++A + + Q + K L+R L   GEE+ + RIA A+++ R+     +TT  
Sbjct: 130 LDMRMDTSRGVTAREWLEQVDEKTLSRALRDYGEERHSRRIARALIRAREDGALPETTGA 189

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ LI + V        HPATRSFQALRI +N E+E L   L      L  GG L+V+SF
Sbjct: 190 LARLIAENVPGRPEPGKHPATRSFQALRIAINGELEALDALLERICDLLAPGGRLVVISF 249

Query: 251 HSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR VK++   +S    +     +   A     +S+ +  + P + + A N R+RSA
Sbjct: 250 HSLEDRRVKRYIRKQSTVGDLPPSVPVAPEALQPRLRSVGR-ALRPGEAEQAANPRARSA 308

Query: 310 KLRAGMR 316
            +R   R
Sbjct: 309 VMRVAER 315


>gi|254415023|ref|ZP_05028786.1| S-adenosyl-methyltransferase MraW [Microcoleus chthonoplastes PCC
           7420]
 gi|196178170|gb|EDX73171.1| S-adenosyl-methyltransferase MraW [Microcoleus chthonoplastes PCC
           7420]
          Length = 291

 Score =  333 bits (855), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 114/312 (36%), Positives = 158/312 (50%), Gaps = 26/312 (8%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDP 68
           M          H  VL +++IA L   PG   LDAT G GG+S        +V     D 
Sbjct: 1   MEFDAQTAQFFHRSVLSQELIAGLAIRPGGHYLDATVGGGGHSELILSAAPDVRVTAIDQ 60

Query: 69  FAVSCGQE--TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126
            A +       +  Y ++   ++  F   Q   P+   DG++ DLGVSS Q+D  DRGFS
Sbjct: 61  DAQAIAAAQTRLASYGDRIQFWRGNFVDYQP--PESLFDGIIADLGVSSAQLDIPDRGFS 118

Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           F+   PLDMRM     ++A+ ++N  +   L   +   GEE+ + RIA AIV+RR   PF
Sbjct: 119 FRHQAPLDMRMDQRQSLTAAQIINHWDETQLANTIYEYGEERLSRRIARAIVERR---PF 175

Query: 186 QTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           +TT  L+  I ++V    +  RIHPATR+FQALRI VN E+  L + L  A + LK GG 
Sbjct: 176 ETTTQLAEAIARSVPKKYRYGRIHPATRTFQALRIAVNQELSSLEKFLNCAPRWLKPGGR 235

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           + ++SFHSLEDRLVK                        + + +TKK + P   +   N 
Sbjct: 236 IGIISFHSLEDRLVKHHLRDS-----------------PILRVLTKKPITPQPTERDENP 278

Query: 305 RSRSAKLRAGMR 316
           R+RSAKLR   R
Sbjct: 279 RARSAKLRLAER 290


>gi|29840135|ref|NP_829241.1| S-adenosyl-methyltransferase MraW [Chlamydophila caviae GPIC]
 gi|33301363|sp|Q823N6|RSMH_CHLCV RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|29834483|gb|AAP05119.1| S-adenosyl-methyltransferase MraW [Chlamydophila caviae GPIC]
          Length = 297

 Score =  333 bits (854), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 110/304 (36%), Positives = 161/304 (52%), Gaps = 20/304 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI---ALDRDPFAVSCGQE 76
           H+PVL+ + ++  +    +   D T GAGG++ +F     ++I     DRD  A+S  +E
Sbjct: 7   HIPVLVNECLSWFSDRNPRSFCDVTVGAGGHAEAFLSTYPSIISYDGSDRDATALSLARE 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ-KSGPLDM 135
            +  + ++  L  A+F  L     +   DG++ DLGVSSMQ+D   RGFSFQ +   LDM
Sbjct: 67  RLEKFGDRVHLHHASFEDLAQDPKENVYDGILADLGVSSMQLDTLSRGFSFQGEDHDLDM 126

Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM  S GI+AS+V+N    ++L +I    GEE     +A+AIV  R+     T +DL   
Sbjct: 127 RMDTSQGITASEVLNTLREEELGKIFREYGEEPHWKNVANAIVHFRRRKKIITVKDLKEA 186

Query: 195 IQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
             +     +   +IHP T  FQALR++VN E  +L   L SA + L   G L+++SF S 
Sbjct: 187 TARVFPSYRLRKKIHPLTLIFQALRVYVNQEDVQLKVLLESAMRWLAPKGRLVIISFCSS 246

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           EDR VK FF       +               + +TKKVV+PT E++  N R RSAKLR 
Sbjct: 247 EDRPVKWFFREAEKSGLG--------------KILTKKVVMPTYEEIRRNPRCRSAKLRC 292

Query: 314 GMRT 317
             +T
Sbjct: 293 FEKT 296


>gi|189501435|ref|YP_001960905.1| S-adenosyl-methyltransferase MraW [Chlorobium phaeobacteroides BS1]
 gi|263445802|sp|B3EQC6|RSMH_CHLPB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|189496876|gb|ACE05424.1| S-adenosyl-methyltransferase MraW [Chlorobium phaeobacteroides BS1]
          Length = 332

 Score =  333 bits (854), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 110/316 (34%), Positives = 177/316 (56%), Gaps = 21/316 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC--------KMGSNVIALDRDPFAV 71
           H+PV++ +V+A L      + +D T G GG+S +          + GS +I +D+D FA+
Sbjct: 7   HLPVMVREVVAWL-VRRAGIYVDGTLGGGGHSLAILRALRDKGLEKGSFLIGIDQDSFAI 65

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDY--------VPDKGVDGVVFDLGVSSMQIDCGDR 123
           +  + T+  ++E+  L Q  F ++ D         +    V G++ DLGVSS QID  +R
Sbjct: 66  AEAERTLASFRERTRLVQGNFREIADIVSTLRENQLRGMEVAGILLDLGVSSFQIDTSER 125

Query: 124 GFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR-Q 181
           GFS+ +SGPLDMRM    G SA+D+VN    ++L  I    GEEK++ RIA AI   R +
Sbjct: 126 GFSYLRSGPLDMRMEPDEGQSAADIVNTFEERELADIFFRFGEEKKSRRIASAICSWRNE 185

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
               + TQDL+++++  V    + +I   +R FQALRI VN+E+  L   L+    +L  
Sbjct: 186 RGVIRGTQDLAAIVRSVVSVP-DQQIKSLSRIFQALRIAVNDELGALESALKEGAASLSP 244

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDV 300
            G + V+S+HS+EDR+VK +F + +      + + +    H A F  +T+K ++   ++V
Sbjct: 245 QGRMAVMSYHSIEDRMVKHYFRTLAADDWGPKGVALREPLHKAAFTLVTRKALIAGDDEV 304

Query: 301 AFNRRSRSAKLRAGMR 316
             N R+RSAK+R   R
Sbjct: 305 NENSRARSAKMRVIER 320


>gi|313661472|ref|NP_001186351.1| putative S-adenosyl-L-methionine-dependent methyltransferase
           METT5D1 [Gallus gallus]
          Length = 409

 Score =  333 bits (854), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 134/335 (40%), Positives = 181/335 (54%), Gaps = 38/335 (11%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           HVPV++E+V++ L+P  G+  LD TFGAGG+S +  +  SN+   ALDRDP A    Q+ 
Sbjct: 74  HVPVMMEEVVSCLSPQSGQCFLDMTFGAGGHSTALLEKASNITIYALDRDPTAYKIAQQL 133

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              Y +Q       FSQ +  +   GV     DGV+ D G SSMQ D  +RGFS QK GP
Sbjct: 134 SESYPKQIQALLGQFSQSEALLISSGVEPGTLDGVLLDAGCSSMQFDTPERGFSLQKDGP 193

Query: 133 LDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           LDMRM         +A+DVVN  + + L  IL   GEEK A +IA AIV+ R   P   T
Sbjct: 194 LDMRMDSDRYPDMPTAADVVNALDQQALASILRTYGEEKHAKKIASAIVQARSIYPITRT 253

Query: 189 QDLSSLIQKTVYFSK--------NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           Q L+S++      S             H AT++FQ LRIFVN+E+ EL  GL++AEK LK
Sbjct: 254 QQLASIVAGAFPASALYARKDLLQRPTHIATKTFQGLRIFVNDELHELFIGLKTAEKFLK 313

Query: 241 AGGLLIVVSFHSLEDRLVKKFFAS-------------------RSGKVMAVRHMIPSNAH 281
            GG L+ +SFHSLEDR++K+F                      ++       H  P    
Sbjct: 314 PGGRLVALSFHSLEDRIIKRFLHGIDMTEKYNLGSKQKIRQALKNCSKEEDTHEFPHGKS 373

Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
            + +  I KKV+ P  +D+  N R+RSAKLRA ++
Sbjct: 374 NSKWTFIQKKVLTPQAKDILTNPRARSAKLRAAVK 408


>gi|149022854|gb|EDL79748.1| similar to RIKEN cDNA 0610027B03, isoform CRA_a [Rattus norvegicus]
 gi|149022855|gb|EDL79749.1| similar to RIKEN cDNA 0610027B03, isoform CRA_a [Rattus norvegicus]
          Length = 406

 Score =  333 bits (854), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 136/334 (40%), Positives = 183/334 (54%), Gaps = 37/334 (11%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           H+PV++++V+  L P  G+V LD TFG+GG+S++  +   +V   ALDRDP A +  +  
Sbjct: 72  HIPVMVDEVVQCLTPQKGQVFLDMTFGSGGHSKAILQKEPDVTVYALDRDPVAFTLAERL 131

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              Y  Q       FSQ +  +   GV     DGV+ DLG SSMQ+D  +RGFS +K GP
Sbjct: 132 SEMYPTQIHAMLGQFSQAETLLMKAGVQPGTVDGVLLDLGCSSMQLDAPERGFSLRKDGP 191

Query: 133 LDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           LDMRM         +A+DVVN  + + L  IL   GEEK A +IA AI++ R + P   T
Sbjct: 192 LDMRMDGDRYPDMPTAADVVNALDQQALASILRAYGEEKHAKKIASAIIQARSTYPISRT 251

Query: 189 QDLSSLIQKTVYFSK--------NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           Q L+S++      S             H AT++FQALRIFVNNE+ EL  GLR+A+K LK
Sbjct: 252 QQLASIVAGAFPPSAIYARKDLLQRSTHIATKTFQALRIFVNNELNELYTGLRTAQKFLK 311

Query: 241 AGGLLIVVSFHSLEDRLVKKFF---------------ASRSGKVMAVRHMIPSN---AHP 282
            GG L+ +SFHSLEDR+VK+F                  R    M   H I        P
Sbjct: 312 PGGRLVALSFHSLEDRIVKRFLLGISMTERFNLSIRQKVRQTSQMDSDHEIEERRCVRAP 371

Query: 283 AVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
             ++ I KKV+ P  +DV  N R RSAKLRA ++
Sbjct: 372 LKWELIHKKVLTPEDQDVQANPRGRSAKLRAAIK 405


>gi|154250452|ref|YP_001411277.1| S-adenosyl-methyltransferase MraW [Fervidobacterium nodosum
           Rt17-B1]
 gi|263447049|sp|A7HNY7|RSMH_FERNB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|154154388|gb|ABS61620.1| S-adenosyl-methyltransferase MraW [Fervidobacterium nodosum
           Rt17-B1]
          Length = 294

 Score =  332 bits (853), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 109/309 (35%), Positives = 162/309 (52%), Gaps = 32/309 (10%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCG 74
            H+PVLL +V+  L   P  V +D T G GG++R+  +     G  VI +D D   +   
Sbjct: 8   HHIPVLLNEVVENLIWKPDGVYVDCTVGEGGHTRAIAERVLPYGGRVIGIDVDSEVLQIA 67

Query: 75  QETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +  +  Y     LF+ ++ +L      +    VDG++ DLGVS+ Q+    RGFSF +  
Sbjct: 68  EHNLLSY-PNVQLFKFSYVELPVLLSLLQVHKVDGLLVDLGVSTYQLKAEGRGFSFNQDE 126

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+  + ++A  +VN    + L  I+   GEE  + RIA AIV+ R   P QTT+ 
Sbjct: 127 PLDMRMNLENNLTAYHIVNTYPEEKLADIIYNYGEENFSRRIARAIVQNR---PIQTTRQ 183

Query: 191 LSSLIQKTVYFSK--NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L  +I++ + + +  N + H AT++FQA+RI VN EIE +++ L  A   L +GG L ++
Sbjct: 184 LVEVIKRALPYKEVHNRKRHFATKTFQAIRIEVNKEIENISKFLEFAPDYLNSGGRLAII 243

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDR+VK  F +                            + PT  +VA N R+RS
Sbjct: 244 SFHSLEDRIVKHVFKNDKRLKPIGDF------------------ISPTTFEVAENPRARS 285

Query: 309 AKLRAGMRT 317
           AKLR   R 
Sbjct: 286 AKLRLAERV 294


>gi|320535363|ref|ZP_08035477.1| S-adenosyl-methyltransferase MraW [Treponema phagedenis F0421]
 gi|320147765|gb|EFW39267.1| S-adenosyl-methyltransferase MraW [Treponema phagedenis F0421]
          Length = 317

 Score =  332 bits (853), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 111/315 (35%), Positives = 168/315 (53%), Gaps = 12/315 (3%)

Query: 20  HVPVLLEKVIALLNPA-PGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76
           H  VLL++ ++LL PA    + +D T G GG++ +F K    +  I +D DP   +  + 
Sbjct: 5   HKSVLLQESLSLLKPASEDTLFVDGTLGEGGHTEAFLKTYPQLSAIGIDADPTIQAKAKL 64

Query: 77  TMRDYKEQFSLFQAT----FSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            ++ +  +   F       F       P   +  ++FDLG+S        RGFSFQ   P
Sbjct: 65  RLQPFASRVQYFSGWSDDFFKNYSTEYPKPNI--ILFDLGISMFHYIESGRGFSFQAEEP 122

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMR++  + +SA++++N    ++L  I    GEE+ + +IA AI  RR+   F+T  DL
Sbjct: 123 LDMRINPATSLSAAEIINTYKEEELASIFYTYGEERFSRKIAGAICLRRKEQEFKTAGDL 182

Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           + +I K V  + ++ RIHPATRSFQALRI VN E++ L   L+ A + L   G L V+SF
Sbjct: 183 AEVIFKAVPPAYRHGRIHPATRSFQALRIKVNGELDRLPDLLKLAFQRLALNGKLGVISF 242

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           HSLEDR+VK++F   +          I       + Q +T K V+PT E++  N  SRSA
Sbjct: 243 HSLEDRIVKRYFRDLAKNCRCPPEMPICKCGGRPLAQLLTGKPVIPTDEEIRVNPASRSA 302

Query: 310 KLRAGMRTVERSIED 324
           KLRA  + +      
Sbjct: 303 KLRAVKKILTEEGAA 317


>gi|13471557|ref|NP_103123.1| S-adenosyl-methyltransferase MraW [Mesorhizobium loti MAFF303099]
 gi|20139098|sp|Q98KA5|RSMH_RHILO RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|14022299|dbj|BAB48909.1| mll1565 [Mesorhizobium loti MAFF303099]
          Length = 338

 Score =  332 bits (853), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 144/336 (42%), Positives = 199/336 (59%), Gaps = 36/336 (10%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H+PVLL +V+  L PA   +I+D TFGAGGY+R+    G++V+A+DRDP A++ G++   
Sbjct: 18  HIPVLLGEVLEALAPAERDIIIDGTFGAGGYTRAILATGASVVAIDRDPDAIAAGRDLEV 77

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
               +  L QA FS L ++V     DGVV D+GVSSMQ+D  +RGFSF+  GPLDMRM+ 
Sbjct: 78  QSGGRLRLVQAPFSTLDEHVE--SADGVVLDIGVSSMQLDQAERGFSFRFDGPLDMRMAQ 135

Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV 199
           +G+SA+DVVN     DL RI G LGEE+ A RIA  I  RR+  PF+ T +L+  I+  +
Sbjct: 136 AGLSAADVVNSFKPGDLARIFGFLGEERHAGRIARMIEARREKKPFEGTLELADAIETHI 195

Query: 200 YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259
             +  ++IHPATR FQALRI+VN+E+ ELA+ L +AE+ALK GG L+VV+FHSLEDR+VK
Sbjct: 196 GRAPKDKIHPATRVFQALRIYVNDELGELAKALFAAERALKPGGRLVVVTFHSLEDRIVK 255

Query: 260 KFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR--------------- 304
           +F A R+      RH+  + A  A F+      V     +VA N                
Sbjct: 256 RFIADRADVATGSRHLPEAQARTATFRKAGGG-VTAGDAEVAANPRARSARLRAAIRTEA 314

Query: 305 --RSRSAKLRAGMRTVERSIEDDSFVHLPRLPTLSQ 338
             R+                 D S   LP+LP + +
Sbjct: 315 PARA----------------GDFSIFGLPKLPGIDR 334


>gi|121595969|ref|YP_987865.1| S-adenosyl-methyltransferase MraW [Acidovorax sp. JS42]
 gi|263433389|sp|A1WC14|RSMH_ACISJ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|120608049|gb|ABM43789.1| S-adenosyl-methyltransferase MraW [Acidovorax sp. JS42]
          Length = 308

 Score =  332 bits (853), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 118/310 (38%), Positives = 173/310 (55%), Gaps = 16/310 (5%)

Query: 20  HVPVLLEKVIALL---NPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSC 73
           H  VLL++ +  L     AP    +D TFG GG+SR   +       ++A D+D  A+  
Sbjct: 7   HTTVLLDEAVHALLGDGDAPAGTFVDGTFGRGGHSRLILQRLGPQGRLVAFDKDTEAIQA 66

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                R    +FS+    FS L + +P   V GV+ DLGVSS QID   RGFSF+  GPL
Sbjct: 67  A---ARITDARFSIRHQGFSHLGE-LPAASVSGVLLDLGVSSPQIDDPQRGFSFRFDGPL 122

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR-QSAPFQTTQDL 191
           DMRM  + G S ++ +  A    +  ++   GEE+ A  IA AIV RR +  P  +T +L
Sbjct: 123 DMRMDTTRGQSVAEWLADAETAQIAEVIRDYGEERFAGPIAKAIVARRTERGPIASTAEL 182

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++   V   +  + +PATR+FQALRIF+N E+EEL Q L  +   L+ GG L+V+SFH
Sbjct: 183 ADIVAGAVKTREPGQ-NPATRTFQALRIFINAELEELQQALEGSLHVLRPGGRLVVISFH 241

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+VK+F A  S +V   R    +   P   +++ +  + P+ ++VA N R+RSA +
Sbjct: 242 SLEDRIVKQFIAQHSKEVY-DRRAPFAPPQPMRLRALER--IKPSTDEVAANARARSAVM 298

Query: 312 RAGMRTVERS 321
           R   RT   +
Sbjct: 299 RVAERTEVPA 308


>gi|15841657|ref|NP_336694.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis
           CDC1551]
 gi|161352465|ref|NP_216681.2| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis
           H37Rv]
 gi|161511532|ref|NP_855838.2| S-adenosyl-methyltransferase MraW [Mycobacterium bovis AF2122/97]
 gi|215403555|ref|ZP_03415736.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis
           02_1987]
 gi|215431098|ref|ZP_03429017.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis
           EAS054]
 gi|218753888|ref|ZP_03532684.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis GM
           1503]
 gi|219558145|ref|ZP_03537221.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis T17]
 gi|254551204|ref|ZP_05141651.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|260187163|ref|ZP_05764637.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis
           CPHL_A]
 gi|260201284|ref|ZP_05768775.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis T46]
 gi|294993552|ref|ZP_06799243.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis 210]
 gi|297634755|ref|ZP_06952535.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis KZN
           4207]
 gi|307084822|ref|ZP_07493935.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis
           SUMu012]
 gi|308369641|ref|ZP_07666771.1| hypothetical protein TMBG_00713 [Mycobacterium tuberculosis
           SUMu002]
 gi|313659080|ref|ZP_07815960.1| 16S rRNA m(4)C1402 methyltranserfase [Mycobacterium tuberculosis
           KZN V2475]
 gi|54037824|sp|P65430|RSMH_MYCBO RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|54041487|sp|P65429|RSMH_MYCTU RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262831560|sp|A5U4J2|RSMH_MYCTA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263460389|sp|A1KKK8|RSMH_MYCBP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263460410|sp|C1AQ81|RSMH_MYCBT RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|13881910|gb|AAK46508.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551]
 gi|308326909|gb|EFP15760.1| hypothetical protein TMBG_00713 [Mycobacterium tuberculosis
           SUMu002]
 gi|308365608|gb|EFP54459.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis
           SUMu012]
          Length = 344

 Score =  332 bits (853), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 119/332 (35%), Positives = 178/332 (53%), Gaps = 19/332 (5%)

Query: 9   MSSAIHHTIG-DHVPVLLEKVIALLNPA-----PGK---VILDATFGAGGYSRSFCKMGS 59
           M+       G  HVPVL ++   LL PA     P     V+LDAT GAGG++  F +   
Sbjct: 1   MADPGSGPTGFGHVPVLAQRCFELLTPALTRYYPDGSQAVLLDATIGAGGHAERFLEGLP 60

Query: 60  --NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDL 111
              +I LDRDP A+   +  +  + ++ +L    +  L   + + G      VDG++FDL
Sbjct: 61  GLRLIGLDRDPTALDVARSRLVRFADRLTLVHTRYDCLGAALAESGYAAVGSVDGILFDL 120

Query: 112 GVSSMQIDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQAS 170
           GVSSMQ+D  +RGF++    PLDMRM  +  ++A+D+VN  +   L  IL   GEE+ A 
Sbjct: 121 GVSSMQLDRAERGFAYATDAPLDMRMDPTTPLTAADIVNTYDEAALADILRRYGEERFAR 180

Query: 171 RIAHAIVKRRQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELA 229
           RIA  IV+RR   PF +T +L +L+ + +   ++    HPA R+FQALRI VN+E+E L 
Sbjct: 181 RIAAGIVRRRAKTPFTSTAELVALLYQAIPAPARRVGGHPAKRTFQALRIAVNDELESLR 240

Query: 230 QGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT 289
             + +A  AL  GG + V+++ SLEDR+VK+ FA            +    H   F+S+T
Sbjct: 241 TAVPAALDALAIGGRIAVLAYQSLEDRIVKRVFAEAVASATPAGLPVELPGHEPRFRSLT 300

Query: 290 KKVVVPTQEDVAFNRRSRSAKLRAGMRTVERS 321
                 +  ++  N RS   +LRA  R   R+
Sbjct: 301 HGAERASVAEIERNPRSTPVRLRALQRVEHRA 332


>gi|317124641|ref|YP_004098753.1| S-adenosyl-methyltransferase MraW [Intrasporangium calvum DSM
           43043]
 gi|315588729|gb|ADU48026.1| S-adenosyl-methyltransferase MraW [Intrasporangium calvum DSM
           43043]
          Length = 371

 Score =  332 bits (853), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 122/310 (39%), Positives = 181/310 (58%), Gaps = 10/310 (3%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74
           HVP++ ++++ LL PA   PG V +D T G GG++        G  VI +DRD  A++  
Sbjct: 11  HVPIMRDRILDLLAPALSTPGAVHVDGTLGMGGHAEGVLSRFPGCRVIGVDRDREALTLA 70

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            E +  + ++F    AT  +L   + D G   VDG+VFDLGVSS+Q+D  DRGF+++   
Sbjct: 71  GERLAGFGDRFLPVHATNDELARVLLDSGLQHVDGIVFDLGVSSLQLDEEDRGFAYRVDA 130

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + G +A+DV+N  +V+D+TRIL   GEE+ A +IA AIV+ R+  PF T+  
Sbjct: 131 PLDMRMDQTRGQTAADVLNTYSVEDVTRILREYGEERFARKIAVAIVREREDEPFATSGR 190

Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  L+++ +   S+    HPA R+FQALRI VN+E+    + + +A   L  GG + V+S
Sbjct: 191 LVELLRRVIPVASQRQSGHPAKRTFQALRIEVNDELGGWERAVAAAIDVLAVGGRMAVLS 250

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+ FA  +         +    H    +++T+    P   +V  N R+ SA
Sbjct: 251 FHSLEDRLTKRAFALGATSSAPRGLPVELPHHAPYLRALTRGAEEPDDAEVLANPRAASA 310

Query: 310 KLRAGMRTVE 319
           KLRA  R  +
Sbjct: 311 KLRAVERVRD 320


>gi|189502287|ref|YP_001958004.1| hypothetical protein Aasi_0908 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|263446692|sp|B3ESS3|RSMH_AMOA5 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|189497728|gb|ACE06275.1| hypothetical protein Aasi_0908 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 310

 Score =  332 bits (853), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 113/317 (35%), Positives = 168/317 (52%), Gaps = 15/317 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDR 66
           M      +   H PVLLE+ +  L   P  + +D TFG GG++++         + A D+
Sbjct: 1   MEILNEPSSTYHQPVLLEESLQGLAIQPDGIYIDTTFGGGGHAKAILAQLKRGKLFAFDQ 60

Query: 67  DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDR 123
           D  A S        +   F+  +A    +Q ++       +DG++ DLGVSS QID   R
Sbjct: 61  DEDAESIASTW---HDPNFTFIRANSRFIQRFLAYHQIEKIDGLIADLGVSSYQIDTALR 117

Query: 124 GFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GFS +  GPLDMRM  S  ++AS +VN  + + LT++    GE   A  +A A++  R  
Sbjct: 118 GFSTRSEGPLDMRMDQSSSLTASQIVNTYSFEALTQLFRTYGELHSAPALAKALIAARTK 177

Query: 183 APFQTTQDLSSLIQKTVYFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            P +TTQ L  +    + FS   +      + FQALRI VN+E+  L   L  + + LK 
Sbjct: 178 HPIETTQSLKEI---ALPFSPPRKSAKFLAQVFQALRIEVNDELGALKSLLEQSLQLLKP 234

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           GG L+++S+HSLEDRLVK+F  + + +    + M  +   P  F  + KK +VPT+E++ 
Sbjct: 235 GGRLVIISYHSLEDRLVKRFIKTGNFEGELDKDMYGNPLQP--FVPVYKKAIVPTEEELV 292

Query: 302 FNRRSRSAKLRAGMRTV 318
            N RSRSAKLR G RT 
Sbjct: 293 INSRSRSAKLRVGERTA 309


>gi|27229243|ref|NP_084066.2| probable methyltransferase-like protein 15 [Mus musculus]
 gi|81906157|sp|Q9DCL4|MET15_MOUSE RecName: Full=Probable methyltransferase-like protein 15; AltName:
           Full=Methyltransferase 5 domain-containing protein 1
 gi|26362646|dbj|BAB22281.2| unnamed protein product [Mus musculus]
 gi|109730967|gb|AAI17550.1| Methyltransferase 5 domain containing 1 [Mus musculus]
 gi|109732458|gb|AAI15927.1| Methyltransferase 5 domain containing 1 [Mus musculus]
 gi|123225263|emb|CAM17438.1| methyltransferase 5 domain containing 1 [Mus musculus]
 gi|123231531|emb|CAM24681.1| methyltransferase 5 domain containing 1 [Mus musculus]
 gi|123231533|emb|CAM25317.1| methyltransferase 5 domain containing 1 [Mus musculus]
          Length = 406

 Score =  332 bits (853), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 137/352 (38%), Positives = 190/352 (53%), Gaps = 44/352 (12%)

Query: 2   ESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV 61
           E K  + M+         H+PV++++V+  L P  G+V LD TFG+GG++R+  +   +V
Sbjct: 61  EEKELEAMAKL-------HIPVMVDQVVHCLAPQKGQVFLDMTFGSGGHTRAILQKEPDV 113

Query: 62  --IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVS 114
              ALDRDP A +  ++  R Y  Q       FSQ +  +   GV     DG++ DLG S
Sbjct: 114 MVYALDRDPVAYAIAEQLSRLYPTQIQALLGQFSQAEALLMKAGVQPGTIDGILMDLGCS 173

Query: 115 SMQIDCGDRGFSFQKSGPLDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQAS 170
           SMQ+D  +RGFS +K GPLDMRM         +ASDVVN  + + L  IL   GEEK A 
Sbjct: 174 SMQLDAPERGFSLRKDGPLDMRMDGDRYPDTPTASDVVNALDQQALASILRAYGEEKHAK 233

Query: 171 RIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSK--------NNRIHPATRSFQALRIFVN 222
           +IA AI++ R + P   TQ L+S++      S             H AT++FQALRIFVN
Sbjct: 234 KIASAIIQARSTYPISRTQQLASIVAGAFPPSAVYARKDLLQRSTHIATKTFQALRIFVN 293

Query: 223 NEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKF-------------FASRSGKV 269
           NE+ EL  GLR+AEK LK GG L+ +SFHSLEDR+VK+F                +  + 
Sbjct: 294 NELNELYAGLRTAEKFLKTGGRLVALSFHSLEDRIVKRFLLGISMTERFNLSIRQKVKQT 353

Query: 270 MAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
             +     +        P  ++ I KKV+ P  +DV  N R RSAKLRA ++
Sbjct: 354 SQLDSDQETEERHSVRAPLKWELIHKKVLTPEDQDVQDNPRGRSAKLRAAIK 405


>gi|294012787|ref|YP_003546247.1| S-adenosyl-methyltransferase [Sphingobium japonicum UT26S]
 gi|292676117|dbj|BAI97635.1| S-adenosyl-methyltransferase [Sphingobium japonicum UT26S]
          Length = 326

 Score =  332 bits (853), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 135/319 (42%), Positives = 197/319 (61%), Gaps = 13/319 (4%)

Query: 9   MSSAIHH--TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDR 66
           MS++  H  +   H+PVL+++V+  L   PG+V +D TFGAGGYS +    G+ V A DR
Sbjct: 1   MSASPDHAQSPERHIPVLIDEVLDALAINPGEVHVDGTFGAGGYSGAMADRGARVFAFDR 60

Query: 67  DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDR 123
           DP A+  GQ    +     +L    FS++++ + ++GV    GV  D+GVSSMQ+D  +R
Sbjct: 61  DPDAIREGQALAEEKG--VTLIAGEFSRMEELLAERGVTSVSGVTLDIGVSSMQLDRPER 118

Query: 124 GFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           GFSFQ  GPLDM MS SG+SA+D +N A  +++  IL   GEE ++ R+A AIV+ R   
Sbjct: 119 GFSFQGDGPLDMTMSRSGMSAADFLNNAPEQEIADILYRYGEEPRSRRVAKAIVEAR--- 175

Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
           P + T  L+++++K +    +++  PATR+FQA+RI VN E+EEL +GL +AE  L+ GG
Sbjct: 176 PLERTGQLANVVRKALGHKPHDKKDPATRTFQAIRIHVNRELEELERGLEAAEAILEEGG 235

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITKKVVVPTQEDVA 301
            L VV+FHSLEDR+VK+F  +RSG   +    +P         F+    K V P   ++A
Sbjct: 236 RLAVVTFHSLEDRIVKQFLRNRSGSEASGSRHLPQRQSGPAPTFERPA-KAVRPGMVELA 294

Query: 302 FNRRSRSAKLRAGMRTVER 320
            N RSRSA LR+ +RT   
Sbjct: 295 RNPRSRSATLRSAVRTSAP 313


>gi|325123733|gb|ADY83256.1| S-adenosylmethionine methyltransferase [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 285

 Score =  332 bits (852), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 103/289 (35%), Positives = 162/289 (56%), Gaps = 15/289 (5%)

Query: 40  ILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ 96
            +DATFG GG++R         + V A D+DP A+      +     +F++  A+F+ ++
Sbjct: 2   YIDATFGRGGHTRLLLSKLDENARVYAFDKDPQALEVASA-LAQEDPRFTIIHASFADIK 60

Query: 97  DYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQAN 152
           + + + GV   DG++ DLGVSS Q+D  +RGFSF + GPLDMRM  S G++A++ + +  
Sbjct: 61  EKMQEIGVMSVDGIMADLGVSSPQLDQAERGFSFMQDGPLDMRMDNSKGLTAAEWLLEIE 120

Query: 153 VKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATR 212
            + L  I+   GEE+ + RIA AI +        TT  L+ L++      + ++ HPATR
Sbjct: 121 EEQLANIIYQYGEERYSRRIAKAIKQA---GKLDTTAQLAELVKTAHPKWEKHK-HPATR 176

Query: 213 SFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAV 272
           +FQA+RI +N E++++   L  A   LK  G L V+SFHSLEDRL+K+F    S     +
Sbjct: 177 TFQAIRIAINKELDDIEVFLPQAVDLLKPKGRLSVISFHSLEDRLIKQFIQKESTLAEDI 236

Query: 273 RHMIPSNA-HPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVER 320
              +P         + I++  V  ++E+V  N RSRSA LR   R  ++
Sbjct: 237 GWGMPQQQVDTRRLKKISR--VRASEEEVKANPRSRSAWLRVAERLEQK 283


>gi|15643635|ref|NP_228681.1| S-adenosyl-methyltransferase MraW [Thermotoga maritima MSB8]
 gi|8134815|sp|Q9WZX6|RSMH_THEMA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|4981407|gb|AAD35954.1|AE001753_10 conserved hypothetical protein [Thermotoga maritima MSB8]
          Length = 299

 Score =  332 bits (852), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 113/309 (36%), Positives = 180/309 (58%), Gaps = 29/309 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77
           H+PV++ +VI  L P   K+ILD T G GG+SR+  +   G  +I +D D   +   +E 
Sbjct: 8   HIPVMVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEK 67

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++++ ++ SLF+ ++ +    +   G   VDG++ DLGVS+ Q+   +RGF+F++  PLD
Sbjct: 68  LKEFSDRVSLFKVSYREADFLLKTLGIEKVDGILMDLGVSTYQLKGENRGFTFEREEPLD 127

Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEK-QASRIAHAIVKRRQSAPFQTTQDLS 192
           MRM   S ++A  V+N+   ++L RI+   GEEK  A RIA  IV+ R   P  TT DL 
Sbjct: 128 MRMDLESEVTAQKVLNELPEEELARIIFEYGEEKRFARRIARKIVENR---PLNTTLDLV 184

Query: 193 SLIQKTVYFS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +++ +     +  + H AT++FQA+RI+VN E+E L + L+ AE  L  GG ++V+SF
Sbjct: 185 KAVREALPSYEIRRRKRHFATKTFQAIRIYVNRELENLKEFLKKAEDLLNPGGRIVVISF 244

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDR+VK+ F +                     + +T+K V P++E++  N R+RS +
Sbjct: 245 HSLEDRIVKETFRNSKK-----------------LRILTEKPVRPSEEEIRENPRARSGR 287

Query: 311 LRAGMRTVE 319
           LRA  R  E
Sbjct: 288 LRAAERIEE 296


>gi|328675727|gb|AEB28402.1| S-adenosyl-methyltransferase MraW [Francisella cf. novicida 3523]
          Length = 305

 Score =  332 bits (852), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 117/309 (37%), Positives = 174/309 (56%), Gaps = 16/309 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76
            H  VLL++ I  LN  P  + +DATFG GG+S++         +IA D+D  A+S   +
Sbjct: 1   MHYSVLLQESINDLNINPQGIYIDATFGRGGHSKAILDKLTTGRLIAFDKDLDAISYANQ 60

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +     F +  A+F+ + DY         +DG++ DLGVSS Q+D   RGFSF   GP
Sbjct: 61  KFQF--SNFEIVHASFASIYDYCLQHNLLSKIDGIIMDLGVSSPQLDNAARGFSFMHDGP 118

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTTQD 190
           LDMRM  S GI+AS  +   +V +L+ I  + GEE+ A +IA  I    +Q+    TT +
Sbjct: 119 LDMRMDVSKGITASQALEVLSVDELSYIFKVYGEERFARKIALRIKDYIQQNGSINTTLE 178

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ LI+ T+   K  + +PATR FQALRI+VNNE+++L   L +    +KAGG +  +SF
Sbjct: 179 LAELIRMTI--GKREKKNPATRCFQALRIYVNNELKDLEALLENILAVIKAGGRIAAISF 236

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH---MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           HSLEDR+VK+ F++       +     M+P ++     + ITKK      +++  N RSR
Sbjct: 237 HSLEDRIVKQKFSALINPKQELNRITKMLPQDSSQIKLKWITKKA-KANDDELNQNVRSR 295

Query: 308 SAKLRAGMR 316
           SA LR   +
Sbjct: 296 SAILRVVEK 304


>gi|21672500|ref|NP_660567.1| hypothetical protein BUsg218 [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|8134808|sp|O85295|RSMH_BUCAP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|3435166|gb|AAC32335.1| hypothetical protein [Buchnera aphidicola]
 gi|21623120|gb|AAM67778.1| hypothetical 36.0 kDa protein [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 312

 Score =  332 bits (852), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 112/316 (35%), Positives = 180/316 (56%), Gaps = 20/316 (6%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPF 69
           ++ TI  H+ V+ +++I  L      + +D TFG GG++ S  K       + A+DRDP 
Sbjct: 1   MNQTI-KHISVMKKELIESLKIKKNGIYIDGTFGMGGHALSILKTIGREGRLYAIDRDPN 59

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGF 125
           +V  G +      ++F +  + FS++ +Y         V+G++FDLG SS+QI+   RGF
Sbjct: 60  SVFIGNQI---KDKRFHIIHSNFSKILNYAKYNNIIGKVNGILFDLGTSSLQIENEKRGF 116

Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF+K+GPLDMRM+  +GISAS+ + ++++  +  +L   GEE+ + RIA+AI    +   
Sbjct: 117 SFKKNGPLDMRMNPHAGISASEWLFKSDINKIYFVLKNFGEERFSKRIAYAIKDYCKKKK 176

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
              T +L  +I+K     KN   HPA R+FQA+RI++N E+EE+ +GL ++ K LK GG 
Sbjct: 177 INNTFELVDIIKKATPI-KNKFKHPAKRTFQAIRIYINQELEEIKKGLENSLKILKPGGR 235

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHP-----AVFQSITKKVVVPTQED 299
           L ++SFHSLEDR+VK F    S K      +  +            + I +  + PTQ++
Sbjct: 236 LSIISFHSLEDRIVKNFMMKYSKKATVPYGLPITENKLETLRICKLKIINR--IFPTQKE 293

Query: 300 VAFNRRSRSAKLRAGM 315
           +  N R+RS+ LR   
Sbjct: 294 IEKNPRARSSVLRTAE 309


>gi|296448271|ref|ZP_06890165.1| S-adenosyl-methyltransferase MraW [Methylosinus trichosporium OB3b]
 gi|296254223|gb|EFH01356.1| S-adenosyl-methyltransferase MraW [Methylosinus trichosporium OB3b]
          Length = 338

 Score =  332 bits (852), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 147/334 (44%), Positives = 198/334 (59%), Gaps = 9/334 (2%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRD 67
           M+      +  H+PVLL++ +A L P  G V LDATFGAGGY+R+      + V+ALDRD
Sbjct: 1   MTMPPEQPMR-HIPVLLDEAMAALGPRSGGVYLDATFGAGGYTRALLAHENTRVLALDRD 59

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRG 124
           P A+  G   +     + +L +A FS+L       G+   DG+V D+GVSSMQ D  +RG
Sbjct: 60  PRAIRDGAALVAAAGGRLTLVEARFSELAQVAGRTGLAPLDGIVADIGVSSMQFDEAERG 119

Query: 125 FSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           FSF+  GPLDMRM  SG SA+D+V +A  + L  IL   GEE+ + RIA AIV  R    
Sbjct: 120 FSFRNDGPLDMRMEGSGRSAADIVAEAEEEALADILYHYGEERASRRIARAIVHARLERK 179

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
            +TT  L+++I++     +   IHPAT+SFQALRI VN+E+ EL   L  AE+ALK GG 
Sbjct: 180 IETTGALAAIIERAAP-GRPGEIHPATKSFQALRIAVNDELGELVAALAGAERALKPGGK 238

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK--KVVVPTQEDVAF 302
           L++VSFHSLEDR+VK+F A RSG+       +P    P     I    K + P++ ++A 
Sbjct: 239 LVIVSFHSLEDRIVKQFLAERSGRGETRSRRLPGEPVPPPPTFIVDDFKPLAPSEREIAA 298

Query: 303 NRRSRSAKLRAGMRTVERSIE-DDSFVHLPRLPT 335
           N RSRSA+LR   RT        D+   L RLP 
Sbjct: 299 NPRSRSARLRVATRTDAPPRPVGDALARLARLPE 332


>gi|319791660|ref|YP_004153300.1| s-adenosyL-methyltransferase mraw [Variovorax paradoxus EPS]
 gi|315594123|gb|ADU35189.1| S-adenosyl-methyltransferase MraW [Variovorax paradoxus EPS]
          Length = 307

 Score =  332 bits (852), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 126/313 (40%), Positives = 179/313 (57%), Gaps = 16/313 (5%)

Query: 15  HTIGDHVPVLLEKVIALL---NPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDP 68
           +T   H  VLL + +  L   + A     +DATFG GG++R+          +IA D+D 
Sbjct: 2   NTPWTHTTVLLNEAVEALLSGSTAATGTYVDATFGRGGHARAILARLAPEGRLIAFDKDA 61

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
            AV+   E  R    +FS+    F  L + +PD  V+G++ DLGVSS QID   RGFSF+
Sbjct: 62  EAVA---EAARISDARFSIRHQGFRSLGE-LPDASVNGLLMDLGVSSPQIDNPVRGFSFR 117

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA-PFQ 186
             GPLDMRM  + G S ++ +  A ++ +  ++   GEE+ A +IA AIV RRQ   P  
Sbjct: 118 FDGPLDMRMDTTRGESVAEWLATAELQQIAEVIRDYGEERFAVQIAKAIVARRQERGPIS 177

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           TT +L+ L+  TV   +  + +PATR+FQA RIF+N E+EEL Q L ++   L+ GG L 
Sbjct: 178 TTTELAELVAGTVKTREQGQ-NPATRTFQAFRIFINAELEELQQALEASLSVLQPGGRLA 236

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+SFHSLEDR+VK+F A  S +V   R      A P V +    + + P++++V  N RS
Sbjct: 237 VISFHSLEDRIVKQFIAKHSKEVYDRRAPF---AAPKVMKLNALERIKPSEDEVRGNPRS 293

Query: 307 RSAKLRAGMRTVE 319
           RSA LR   RT  
Sbjct: 294 RSAILRVAERTEA 306


>gi|238060255|ref|ZP_04604964.1| S-adenosyl-methyltransferase mraW [Micromonospora sp. ATCC 39149]
 gi|237882066|gb|EEP70894.1| S-adenosyl-methyltransferase mraW [Micromonospora sp. ATCC 39149]
          Length = 366

 Score =  332 bits (852), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 115/315 (36%), Positives = 181/315 (57%), Gaps = 11/315 (3%)

Query: 18  GDHVPVLLEKVIALLNPAPGK----VILDATFGAGGYSRSFCKMGSN--VIALDRDPFAV 71
           G HVPVLLE+ + LL PA  +    V +DAT G  G++ +  +   +  +I LDRD  A+
Sbjct: 6   GTHVPVLLERCLELLAPALARGDRTVHVDATLGLAGHAEAVLERHPHTVLIGLDRDTEAL 65

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQ 128
           +  +  +  + ++  L  A + +L + +   G   +DGV+FDLGVSS+Q+D  DRGF++ 
Sbjct: 66  AHARVRLARFADRVHLEHAVYDELPEVLGRLGYPAIDGVLFDLGVSSLQLDAPDRGFAYA 125

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           +  PLDMRM  + G++A +VVN  +  DL R+L + GEEK A RIA AI++ R+ A   +
Sbjct: 126 QDAPLDMRMDQTRGVTAEEVVNTYSHPDLARVLRVYGEEKFAPRIASAILRERERARITS 185

Query: 188 TQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           +  L+ L+++++   ++    HPA R+FQALRI VN E+  L   L +A   L  GG ++
Sbjct: 186 SARLAELVRESIPAPARRTGGHPAKRTFQALRIEVNRELAALETALPAALDKLTVGGRMV 245

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+S+HSLEDRL K     R      V   +        F+ +++   +P + +VA N R+
Sbjct: 246 VLSYHSLEDRLTKAALTDRVRSKGPVDLPVELPGSGPTFRLLSRGAELPGEAEVAANPRA 305

Query: 307 RSAKLRAGMRTVERS 321
            S +LRA  R    +
Sbjct: 306 ASVRLRAAERIDPEA 320


>gi|330994431|ref|ZP_08318356.1| Ribosomal RNA small subunit methyltransferase H [Gluconacetobacter
           sp. SXCC-1]
 gi|329758431|gb|EGG74950.1| Ribosomal RNA small subunit methyltransferase H [Gluconacetobacter
           sp. SXCC-1]
          Length = 319

 Score =  332 bits (852), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 121/305 (39%), Positives = 172/305 (56%), Gaps = 14/305 (4%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSNVIALDRDPFAVSCGQETMR--- 79
           +L +V+  L P  G   +D TFG GGY+R+        +  +DRDP A++ GQ       
Sbjct: 2   MLAEVMDYLAPRDGGRYVDGTFGGGGYARAILASCACQLWGIDRDPAAIARGQALAHTCT 61

Query: 80  --DYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
             D   +  L    F+ +   + + GV   DG+V DLGVSS QID  +RGFSF+  GPLD
Sbjct: 62  APDGTPRLHLLHGGFAGMAALLAEAGVARVDGIVLDLGVSSYQIDQAERGFSFRMDGPLD 121

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRM  +G +A+DVVN     +L  I+   GEE+ + R+A AIV  R  AP   T  L+ +
Sbjct: 122 MRMGDTGPTAADVVNTLPEDELADIIYHYGEERLSRRVARAIVAARAEAPLLRTTQLADV 181

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           ++  V   + + I PATR+FQ LRI VN+E+ ++ + L  A + L  GG L+VVSFHSLE
Sbjct: 182 VRSVVRPDR-SGIDPATRTFQGLRIHVNDELGQIRRVLEEAPRLLAPGGRLVVVSFHSLE 240

Query: 255 DRLVKKFFASRSGKVMAVRHMIP----SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           DRLVK+  A  +G+  A     P      A P  F+ +T + + P +E+   N R+RSA+
Sbjct: 241 DRLVKQAMALAAGRTPAPSRHDPRAMTQRAGPTGFRLLTGRPIRPGEEETRRNPRARSAR 300

Query: 311 LRAGM 315
           LRA  
Sbjct: 301 LRALE 305


>gi|242309935|ref|ZP_04809090.1| S-adenosyl-methyltransferase MraW [Helicobacter pullorum MIT
           98-5489]
 gi|239523232|gb|EEQ63098.1| S-adenosyl-methyltransferase MraW [Helicobacter pullorum MIT
           98-5489]
          Length = 311

 Score =  332 bits (851), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 100/309 (32%), Positives = 174/309 (56%), Gaps = 16/309 (5%)

Query: 19  DHVPVLLEKVIAL----LNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVS 72
            H+ VL ++V+      L    G +++D T G GG+S +  +    +  I +D+D  A++
Sbjct: 4   PHISVLKQEVLETFENELITKNGGILIDCTLGFGGHSLALLEKYPKLKIIGIDQDNDAIA 63

Query: 73  CGQETMRDYKEQFSLFQATFSQ-LQDYV-PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
              + + ++K++FS+    FS+ L+  +  ++ + G++ D+GVSSMQ D  +RGFSF+  
Sbjct: 64  LATKRLENFKDRFSIKYGKFSETLKTILSQEQNIVGILADIGVSSMQFDNKERGFSFESE 123

Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM  +   +A D++N  ++ +L RI    GE ++  ++AH I++ R+     + +
Sbjct: 124 -TLDMRMDKTKNFNAKDIINTYSLPELERIFKNFGEIREYKKLAHCIIELRKKEKITSAK 182

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE-KALKAGGLLIVV 248
            LS  I +     K+ +IHPAT +FQALRI VNNE+ EL + L+  E   ++ G  L ++
Sbjct: 183 MLSEFIARHF---KHPKIHPATLAFQALRIEVNNELGELERLLQIFETHKMQNGARLCII 239

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           SFHSLEDR++K +F       +  +   +     +    +++ KK +    +++  N RS
Sbjct: 240 SFHSLEDRIIKTYFKKWENPCICPQEAMLCKCGKNHQKGKNLYKKPLTAKAQEIQENPRS 299

Query: 307 RSAKLRAGM 315
           RSAKLRA  
Sbjct: 300 RSAKLRAFE 308


>gi|158316863|ref|YP_001509371.1| S-adenosyl-methyltransferase MraW [Frankia sp. EAN1pec]
 gi|263447093|sp|A8KZA9|RSMH_FRASN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|158112268|gb|ABW14465.1| S-adenosyl-methyltransferase MraW [Frankia sp. EAN1pec]
          Length = 327

 Score =  332 bits (851), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 123/320 (38%), Positives = 183/320 (57%), Gaps = 10/320 (3%)

Query: 20  HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           H PVL E+VI LL+P    PG V++DAT G GG+S +  +      +I LDRD  A+   
Sbjct: 5   HTPVLTERVIQLLDPALRRPGAVVVDATVGLGGHSHALLEAFPQVRLIGLDRDTTALEHS 64

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +  +    ++  L  A + QL D +   GV   DGV+FDLGVSSMQ+D  +RGF++ +  
Sbjct: 65  RRRLTGLGDRVDLEHAVYDQLPDVLDRLGVPSVDGVLFDLGVSSMQLDLDERGFAYSRDA 124

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM    G +A+DV+N  +V  LTR+L   GEE+ A RIA A+V +RQ+APF T+  
Sbjct: 125 PLDMRMDQERGPTAADVLNNYDVDALTRVLREYGEERFARRIARAVVTQRQAAPFTTSAR 184

Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  L++ ++  + +    +PA R+FQALRI VN+E+E L + + +A  AL   G L+V+S
Sbjct: 185 LVDLVRDSIPAAARRTGGNPAKRTFQALRIEVNSELEVLERAVPAAFDALAVAGRLVVLS 244

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           +HSLEDRLVK+    RS   +     +  +      + +T+     +  ++  N R+ S 
Sbjct: 245 YHSLEDRLVKRVLMPRSVPSVPPDMPVIPDDARPTLRWLTRGAEPASDTEIEQNARAGSV 304

Query: 310 KLRAGMRTVERSIEDDSFVH 329
           +LRA  RT        +   
Sbjct: 305 RLRAAERTAAEPGRAHNPTG 324


>gi|118468497|ref|YP_888512.1| S-adenosyl-methyltransferase MraW [Mycobacterium smegmatis str. MC2
           155]
 gi|262825134|sp|A0R024|RSMH_MYCS2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|118169784|gb|ABK70680.1| S-adenosyl-methyltransferase MraW [Mycobacterium smegmatis str. MC2
           155]
          Length = 326

 Score =  332 bits (851), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 119/327 (36%), Positives = 185/327 (56%), Gaps = 18/327 (5%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPA-----PGK---VILDATFGAGGYSRSFCKMGS- 59
           M++   H    H+PVLL++ + LL PA     P     V++DAT GAGG+S  F      
Sbjct: 1   MTNDPDH---GHIPVLLDRCVELLAPALTRTDPDGTEAVLVDATLGAGGHSERFLTDFPA 57

Query: 60  -NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSS 115
             +I LDRDP A++   + +  + ++ +L +  +  +   + + GV   DGV+FDLGVSS
Sbjct: 58  LRLIGLDRDPNALAIAGDRLAPFGDRVTLVRTRYDGITSALAEAGVRRIDGVLFDLGVSS 117

Query: 116 MQIDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAH 174
           MQ+D   RGFS+    PLDMRM    + +A+++VN  + K LTRIL   GEE+ A RIA 
Sbjct: 118 MQLDQKQRGFSYSADAPLDMRMDPDALLTAAEIVNTYDAKTLTRILRDYGEERFAGRIAD 177

Query: 175 AIVKRRQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLR 233
            IV+RR   PF TT +L  L+ + +   ++    HPA R+FQALRI VN E++ L   + 
Sbjct: 178 KIVRRRAKQPFTTTSELVELLYEAIPAPARRTGGHPAKRTFQALRIAVNAELDSLRAAIP 237

Query: 234 SAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV 293
           +A  AL+ GG ++V+++ SLEDR+VK+ F++ +         +    H   F ++T+   
Sbjct: 238 AALAALRPGGRIVVMAYQSLEDRIVKQAFSTVTASRTPPGLPMELPGHEPEFVAVTRGAE 297

Query: 294 VPTQEDVAFNRRSRSAKLRAGMRTVER 320
              ++++  N RS   +LRA  +   R
Sbjct: 298 RADEQEIERNPRSAPVRLRALEKVGGR 324


>gi|328948458|ref|YP_004365795.1| ribosomal RNA small subunit methyltransferase H [Treponema
           succinifaciens DSM 2489]
 gi|328448782|gb|AEB14498.1| Ribosomal RNA small subunit methyltransferase H [Treponema
           succinifaciens DSM 2489]
          Length = 340

 Score =  332 bits (851), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 103/308 (33%), Positives = 169/308 (54%), Gaps = 11/308 (3%)

Query: 20  HVPVLLEKVIALLNP-----APGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVS 72
           H PVLL + +  L+P          ++D+T G GG+S +F K    +  + LD D    +
Sbjct: 18  HTPVLLNECLKFLSPIGEPFEKDAFMIDSTLGEGGHSFNFLKKFPTLKILGLDADSVIQA 77

Query: 73  CGQETMRDYKEQFSLFQATFSQLQ-DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
             +E + ++ E+   +   F+    +Y  ++  D ++FDLG+S    +   RGFSF+   
Sbjct: 78  RAKERLSEFGERMKFYNGWFNDFYCNYSEERKPDLILFDLGISVFHYEKSGRGFSFRHDE 137

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMR++  +  SA+D+VN+    +L  ++ +  +EK + RIA AIV  R+S    +T+ 
Sbjct: 138 ELDMRLNADTKESATDIVNEMPEDELANMIYLYSDEKYSRRIASAIVSARKSQKIVSTKA 197

Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ +I   V    K   IHPATR+FQALRI VN+E++ L + + +A   L  GG + V++
Sbjct: 198 LADIIFNAVPSKYKYGNIHPATRTFQALRILVNSELKRLPEAIHAAFNVLAPGGKIGVIT 257

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK +F +   + +  R             + +T+K V P++E++  N  SRS
Sbjct: 258 FHSLEDRIVKNYFRNLGKQCVCPREFPECVCGGTPCAEILTRKPVEPSEEEIKANSPSRS 317

Query: 309 AKLRAGMR 316
           AKLR   +
Sbjct: 318 AKLRVVRK 325


>gi|50842237|ref|YP_055464.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           KPA171202]
 gi|54036174|sp|Q6A9R0|RSMH_PROAC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|50839839|gb|AAT82506.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           KPA171202]
 gi|315107070|gb|EFT79046.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL030PA1]
          Length = 337

 Score =  332 bits (851), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 110/321 (34%), Positives = 169/321 (52%), Gaps = 11/321 (3%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNP--APGK-VILDATFGAGGYSRSFCKMGSN--VIA 63
           M++    +   H+PV+  +++ LL      G+ V +D T G GG++ +  +   +  ++ 
Sbjct: 3   MATDAIGSDAVHIPVMRARILDLLAVVLKSGRRVHVDGTLGMGGHAEAVLRRFPDVELVG 62

Query: 64  LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDC 120
           +DRD  A++  +  +  + ++  L  A   +L + + D G   VD V+ DLG+SS QID 
Sbjct: 63  IDRDQQALTMAEARLEPFADRVHLVHAVHDELPEVLDDLGLDYVDSVLLDLGLSSFQIDE 122

Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS+    PLDMRM  S G +A+ ++N+++   L R+L   GEEK A RI  AIV  
Sbjct: 123 VERGFSYSVDSPLDMRMDQSSGRTAAQILNESDPGALVRMLREYGEEKFADRIVRAIVTE 182

Query: 180 RQSAPFQTTQDLSSLIQKTVYF--SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
           R   P +T+  L  +I + +     +    HPA R+FQALRI VN E+E L   L  A  
Sbjct: 183 RDRQPIETSGRLVEIITEAIPATVRRKRHSHPAKRTFQALRIAVNREMETLPAVLPRALD 242

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297
            L  GG + V+S+HSLEDR VK+ F             +   +  A F  +T+    P  
Sbjct: 243 RLDVGGRIAVLSYHSLEDRPVKEAFRDACADTAPAGLPMVPESMAAKFNPVTRGAERPDA 302

Query: 298 EDVAFNRRSRSAKLRAGMRTV 318
           ++VA N RS SA+LR   R  
Sbjct: 303 DEVATNPRSASARLRVIERVR 323


>gi|305664541|ref|YP_003860828.1| S-adenosyl-methyltransferase MraW [Maribacter sp. HTCC2170]
 gi|88708558|gb|EAR00794.1| S-adenosyl-methyltransferase MraW [Maribacter sp. HTCC2170]
          Length = 297

 Score =  332 bits (851), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 103/305 (33%), Positives = 167/305 (54%), Gaps = 17/305 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H PVLL++ +  L+     V +D TFG GG+S+   K       ++A D+D  A+     
Sbjct: 3   HNPVLLKESVEGLDVKKDGVYVDVTFGGGGHSKEILKRLGPKGRLLAFDQDEDALDN--- 59

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             +   E+F+L    F  ++ ++   G   VDG++ D GVSS Q D  +RGFS +    L
Sbjct: 60  --KLGDERFTLINENFRYIRQFLKFYGIRKVDGILADFGVSSHQFDKAERGFSTRFDADL 117

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRMS  + +SA DVVN     DL ++L   G+ + A+ +A+ I+  R+ AP +T+  L 
Sbjct: 118 DMRMSKKNSVSAYDVVNSYEFNDLRKVLFQYGDLRNANAMANKIITSREEAPIKTSAQLK 177

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            ++++ +   K ++I    + +QA+RI VN EI+ + + L    + L  GG L V+S+HS
Sbjct: 178 EVLRQFLPKHKEHKI--LAQIYQAIRIEVNQEIQVIKELLEQVPELLNLGGRLSVISYHS 235

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDRLVK+F  +   +    +    +   P   + +   ++VP++E+ A N R+RSAKLR
Sbjct: 236 LEDRLVKRFIRAGLFEGEPEKDFYGNIDVP--LKKV-GGLIVPSREETALNNRARSAKLR 292

Query: 313 AGMRT 317
              R 
Sbjct: 293 IAERI 297


>gi|167912660|ref|ZP_02499751.1| S-adenosyl-methyltransferase MraW [Burkholderia pseudomallei 112]
          Length = 313

 Score =  332 bits (851), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 110/312 (35%), Positives = 172/312 (55%), Gaps = 19/312 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H  VLL++ +  L      V +D TFG GG+SR+          +IA D+DP A+   + 
Sbjct: 7   HRTVLLDEAVDALVTRLDGVYVDGTFGRGGHSRAVLARLGDAGRLIAFDKDPRAIETAES 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +F +   +F+ ++  +  +G   V GV+ DLGVSS Q+D   RGFSF+ +GPL
Sbjct: 67  I---EDARFEIVHDSFAAMKGALDARGIGRVSGVLLDLGVSSPQVDDPARGFSFRANGPL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS----APFQTT 188
           DMRM  + G SA++ + +A+V++LT ++   GEE+ A +IA AIV RR       P  +T
Sbjct: 124 DMRMDPTRGESAAEWLARASVQELTEVIRDYGEERFAFQIAKAIVARRAESDRLGPLDST 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ ++   V   +     PATR+FQA+RI VN E+ +L   L +A   L+ GG L+V+
Sbjct: 184 GELAQIVGHVVKT-REKGKDPATRTFQAIRIHVNQELADLQVVLEAALSLLEQGGRLVVI 242

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           SFHSLEDR+VK+F  + +      R +    ++      + + +  + P   +VA N R+
Sbjct: 243 SFHSLEDRIVKRFLQAHASAPAVDRRLPIRAADLPRPPLKLLGR--MFPNDAEVAANPRA 300

Query: 307 RSAKLRAGMRTV 318
           RSA +R   R  
Sbjct: 301 RSAVMRIAERVA 312


>gi|328542958|ref|YP_004303067.1| ribosomal RNA small subunit methyltransferase H [polymorphum gilvum
           SL003B-26A1]
 gi|326412704|gb|ADZ69767.1| Ribosomal RNA small subunit methyltransferase H [Polymorphum gilvum
           SL003B-26A1]
          Length = 346

 Score =  332 bits (851), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 142/292 (48%), Positives = 192/292 (65%), Gaps = 5/292 (1%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77
             HVPVLL  V+  L PA G+VI+D TFGAGGYSR+F + G+ VI +DRDP A++ GQ+ 
Sbjct: 17  ARHVPVLLSAVLDTLRPAEGEVIVDGTFGAGGYSRAFLEAGAAVIGVDRDPDAIAGGQDL 76

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +R    +  L    F+ L  +    G   VDGVV DLGVSSMQID  +RGFSF + GPLD
Sbjct: 77  VRASGGRLVLVPGRFADLDAHARACGHEAVDGVVLDLGVSSMQIDQAERGFSFMRDGPLD 136

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           MRM  +G SA+DVVN    +DLTRI+G+LGEEK+A+ +A AI + R   PF  T +L+ L
Sbjct: 137 MRMEQAGPSAADVVNTLPARDLTRIIGLLGEEKRAAAVARAISEARAEKPFTRTGELADL 196

Query: 195 IQKTV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           +++ V    K   IHPATR+FQALRI+VN E+ + A+ L +AE+ L+ GG L+VVSFHSL
Sbjct: 197 VERVVGRAPKKAHIHPATRTFQALRIYVNGELHQAAEALTAAERILRPGGRLVVVSFHSL 256

Query: 254 EDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           EDR+VK+F A R+  +    RH+  +   PA F+ + K  V   + + + N 
Sbjct: 257 EDRIVKRFLADRTRVRAGGSRHLPEAEVPPATFELLVKGAVEADEAETSANP 308


>gi|295130325|ref|YP_003580988.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes SK137]
 gi|291376254|gb|ADE00109.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes SK137]
 gi|313764743|gb|EFS36107.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL013PA1]
 gi|313791793|gb|EFS39904.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL110PA1]
 gi|313802120|gb|EFS43352.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL110PA2]
 gi|313807237|gb|EFS45724.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL087PA2]
 gi|313809743|gb|EFS47464.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL083PA1]
 gi|313813215|gb|EFS50929.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL025PA1]
 gi|313815808|gb|EFS53522.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL059PA1]
 gi|313818283|gb|EFS55997.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL046PA2]
 gi|313820045|gb|EFS57759.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL036PA1]
 gi|313823146|gb|EFS60860.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL036PA2]
 gi|313825577|gb|EFS63291.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL063PA1]
 gi|313827816|gb|EFS65530.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL063PA2]
 gi|313838452|gb|EFS76166.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL086PA1]
 gi|314915234|gb|EFS79065.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL005PA4]
 gi|314918537|gb|EFS82368.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL050PA1]
 gi|314919800|gb|EFS83631.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL050PA3]
 gi|314925467|gb|EFS89298.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL036PA3]
 gi|314931815|gb|EFS95646.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL067PA1]
 gi|314955971|gb|EFT00369.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL027PA1]
 gi|314958366|gb|EFT02469.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL002PA1]
 gi|314960282|gb|EFT04384.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL002PA2]
 gi|314963091|gb|EFT07191.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL082PA1]
 gi|314978268|gb|EFT22362.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL072PA2]
 gi|314987732|gb|EFT31823.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL005PA2]
 gi|314990211|gb|EFT34302.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL005PA3]
 gi|315077555|gb|EFT49613.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL053PA2]
 gi|315080339|gb|EFT52315.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL078PA1]
 gi|315084598|gb|EFT56574.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL027PA2]
 gi|315085934|gb|EFT57910.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL002PA3]
 gi|315088648|gb|EFT60624.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL072PA1]
 gi|315098257|gb|EFT70233.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL059PA2]
 gi|315101052|gb|EFT73028.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL046PA1]
 gi|315108244|gb|EFT80220.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL030PA2]
 gi|327332217|gb|EGE73954.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL096PA3]
 gi|327442839|gb|EGE89493.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL013PA2]
 gi|327451061|gb|EGE97715.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL087PA3]
 gi|327452857|gb|EGE99511.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL092PA1]
 gi|327453584|gb|EGF00239.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL083PA2]
 gi|328753094|gb|EGF66710.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL087PA1]
 gi|328753749|gb|EGF67365.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL020PA1]
 gi|328759161|gb|EGF72777.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL025PA2]
 gi|332675167|gb|AEE71983.1| ribosomal RNA small subunit methyltransferase H [Propionibacterium
           acnes 266]
          Length = 337

 Score =  332 bits (851), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 110/321 (34%), Positives = 169/321 (52%), Gaps = 11/321 (3%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNP--APGK-VILDATFGAGGYSRSFCKMGSN--VIA 63
           M++    +   H+PV+  +++ LL      G+ V +D T G GG++ +  +   +  ++ 
Sbjct: 3   MATDAIGSDAVHIPVMRARILDLLAVVLKSGRRVHVDGTLGMGGHAEAVLRRFPDVELVG 62

Query: 64  LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDC 120
           +DRD  A++  +  +  + ++  L  A   +L + + D G   VD V+ DLG+SS QID 
Sbjct: 63  IDRDQQALTMAEARLEPFADRVHLVHAVHDELPEVLDDLGLDYVDSVLLDLGLSSFQIDE 122

Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS+    PLDMRM  S G +A+ ++N+++   L R+L   GEEK A RI  AIV  
Sbjct: 123 VERGFSYSVDSPLDMRMDQSSGRTAAQILNESDPGALVRMLREYGEEKFADRIVRAIVTE 182

Query: 180 RQSAPFQTTQDLSSLIQKTVYF--SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
           R   P +T+  L  +I + +     +    HPA R+FQALRI VN E+E L   L  A  
Sbjct: 183 RDRQPIETSGRLVEIITEAIPATVRRKRHSHPAKRTFQALRIAVNREMETLPAVLPRALD 242

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297
            L  GG + V+S+HSLEDR VK+ F             +   +  A F  +T+    P  
Sbjct: 243 RLDVGGRIAVLSYHSLEDRPVKEAFRDACADTAPAGLPMVPESMAAKFNPVTRGAERPDA 302

Query: 298 EDVAFNRRSRSAKLRAGMRTV 318
           ++VA N RS SA+LR   R  
Sbjct: 303 DEVATNPRSASARLRVIERVR 323


>gi|150026102|ref|YP_001296928.1| S-adenosyl-methyltransferase MraW [Flavobacterium psychrophilum
           JIP02/86]
 gi|263447480|sp|A6H1A2|RSMH_FLAPJ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|149772643|emb|CAL44126.1| S-adenosyl-methyltransferase MraW [Flavobacterium psychrophilum
           JIP02/86]
          Length = 291

 Score =  332 bits (851), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 98/300 (32%), Positives = 161/300 (53%), Gaps = 17/300 (5%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRD 80
           +L++ +  LN  P  V +D TFG GG+S+           +   D+D  A          
Sbjct: 1   MLKETVDGLNIKPDGVYVDVTFGGGGHSKEILSRLGPEGKLFGFDQDEDAWENAL----- 55

Query: 81  YKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
             E+F+L Q  F  ++ ++   G   VDG++ DLGVSS Q D  +RGFS +    LDMRM
Sbjct: 56  PDERFTLIQENFRYIKRFLRFNGIKKVDGILADLGVSSHQFDVPERGFSTRFDAELDMRM 115

Query: 138 SC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
           S  + ++A ++VN+ +  +L RI    GE   A  IA AI++ R+      T+DL  ++ 
Sbjct: 116 SKKNDLTAFNIVNEYDETNLRRIFAEYGELGNALAIARAIIEAREKEKIVNTEDLKQVLA 175

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
           + +  +K ++I    + +Q++RI VN E++ L + L  + + L  GG L V+S+HSLEDR
Sbjct: 176 RFLPNNKAHKI--LAQIYQSIRIEVNQEMDVLKEFLEQSLEVLDQGGRLSVISYHSLEDR 233

Query: 257 LVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           LVK+F  +   +    +        P  F+ I  K+++P+ +++  N R+RSAKLR   +
Sbjct: 234 LVKRFMKNGLFEGEPEKDFFGRFEVP--FKLI-GKMIIPSNQEIKINNRARSAKLRIAEK 290


>gi|308189974|ref|YP_003922905.1| S-adenosyl-methyltransferase [Mycoplasma fermentans JER]
 gi|319777256|ref|YP_004136907.1| s-adenosyl-methyltransferase mraw [Mycoplasma fermentans M64]
 gi|307624716|gb|ADN69021.1| S-adenosyl-methyltransferase [Mycoplasma fermentans JER]
 gi|318038331|gb|ADV34530.1| S-adenosyl-methyltransferase MraW [Mycoplasma fermentans M64]
          Length = 301

 Score =  331 bits (850), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 107/306 (34%), Positives = 157/306 (51%), Gaps = 16/306 (5%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQ 75
             H  VLL++ I  LN  P  + +D T G GG+S    K      +IA D+D FA+   +
Sbjct: 3   NQHFSVLLQESIDALNIKPDGIYVDLTLGMGGHSSEILKRLDTGRLIAFDKDTFAIEESR 62

Query: 76  ETMRDYKE-QFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           + +   K   F L  + F  ++  +       VDG++ DLG+SS Q+D  +RGFS+ K+ 
Sbjct: 63  KRLSQIKSTNFQLIHSDFKNIKSELDKLNISQVDGIIADLGISSPQVDNDERGFSYNKNA 122

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM  S  + A  VVN  +   L ++L    E K A ++A AI+ +R   P  TT +
Sbjct: 123 RLDMRMDQSQKLDAYYVVNNYSESQLEQLLRNYAEVKLARQVAKAIISKR---PITTTLE 179

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ +++           +P    FQA+RI VNNE + L Q L+ A + LK    L V++F
Sbjct: 180 LAQVVRDAYPAKLVKLKNPNKAVFQAIRIEVNNEFDSLKQMLQDAIELLKPNTSLAVITF 239

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLED +VK FF S     +  +  I       V      KV +PT  ++  N+RSRSAK
Sbjct: 240 HSLEDSIVKHFFGSLIKSKLPAKMPINEEKQYKV------KVFLPTNNELELNKRSRSAK 293

Query: 311 LRAGMR 316
           LR   +
Sbjct: 294 LRVLKK 299


>gi|89256825|ref|YP_514187.1| S-adenosyl-methyltransferase MraW [Francisella tularensis subsp.
           holarctica LVS]
 gi|115315211|ref|YP_763934.1| S-adenosyl-methyltransferase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|167009864|ref|ZP_02274795.1| S-adenosyl-methyltransferase [Francisella tularensis subsp.
           holarctica FSC200]
 gi|169656696|ref|YP_001429056.2| S-adenosyl-methyltransferase MraW [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|254368107|ref|ZP_04984127.1| S-adenosyl-methyltransferase [Francisella tularensis subsp.
           holarctica 257]
 gi|254369709|ref|ZP_04985719.1| S-adenosyl-methyltransferase [Francisella tularensis subsp.
           holarctica FSC022]
 gi|290953521|ref|ZP_06558142.1| S-adenosyl-methyltransferase MraW [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295313213|ref|ZP_06803872.1| S-adenosyl-methyltransferase MraW [Francisella tularensis subsp.
           holarctica URFT1]
 gi|122324792|sp|Q0BKT7|RSMH_FRATO RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|122500397|sp|Q2A265|RSMH_FRATH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263447878|sp|A7NDP7|RSMH_FRATF RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|89144656|emb|CAJ79980.1| S-adenosyl-methyltransferase [Francisella tularensis subsp.
           holarctica LVS]
 gi|115130110|gb|ABI83297.1| S-adenosyl-methyltransferase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134253917|gb|EBA53011.1| S-adenosyl-methyltransferase [Francisella tularensis subsp.
           holarctica 257]
 gi|157122668|gb|EDO66797.1| S-adenosyl-methyltransferase [Francisella tularensis subsp.
           holarctica FSC022]
 gi|164551764|gb|ABU62100.2| S-adenosyl-methyltransferase MraW [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 305

 Score =  331 bits (850), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 118/309 (38%), Positives = 179/309 (57%), Gaps = 16/309 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76
            H  VLL++ I  LN  P  + +DATFG GG+S++         +IA D+D  A+S  +E
Sbjct: 1   MHYSVLLQESINDLNINPQGIYIDATFGRGGHSKAILNRLTTGRLIAFDKDLDAISYARE 60

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +     F +  A+F+ + DY         +DG++ DLGVSS Q+D   RGFSF  +GP
Sbjct: 61  NFQF--SNFEIVHASFASIYDYCLQHSLLGKIDGIIMDLGVSSPQLDNAARGFSFTHNGP 118

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTTQD 190
           LDMRM  S GI+AS  + + +V DL+ I  + GEE+ A +IA  I    +Q+   +TT +
Sbjct: 119 LDMRMDVSKGITASQALEELSVYDLSYIFKVYGEERFAKKIALRIKDYIQQNGSIRTTLE 178

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ LI+ T+   K  + +PATR FQALRI+VNNE+++L   L +    +K+GG +  +SF
Sbjct: 179 LAELIRATI--GKKEKKNPATRCFQALRIYVNNELKDLEALLENILAVIKSGGRIAAISF 236

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH---MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           HSLEDR+VK+ F++       +     M+P ++     + ITKK     ++++  N RSR
Sbjct: 237 HSLEDRIVKQKFSALINPKQELNRITKMLPQDSSQIKLKWITKKS-KANEDELNQNVRSR 295

Query: 308 SAKLRAGMR 316
           SA LR   +
Sbjct: 296 SAILRVVEK 304


>gi|72161506|ref|YP_289163.1| methyltransferase [Thermobifida fusca YX]
 gi|88909224|sp|Q47QX7|RSMH_THEFY RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|71915238|gb|AAZ55140.1| bacterial methyltransferase [Thermobifida fusca YX]
          Length = 330

 Score =  331 bits (850), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 104/295 (35%), Positives = 169/295 (57%), Gaps = 10/295 (3%)

Query: 20  HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           HVPV+LE+V+ LL P    PG + +D T G GG++ +  +      ++ +DRD  A+   
Sbjct: 20  HVPVMLERVVELLAPALQQPGAIAVDGTLGLGGHAEALLRAHPGLRLVGVDRDTTALERA 79

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSG 131
           ++ +  Y ++  L  A +S +   + + G+D   G++FDLGVSS Q+D  +RGF++    
Sbjct: 80  RQRLAPYADRIDLVHAVYSDIPRILDELGIDRVHGLLFDLGVSSPQLDEAERGFAYSYDA 139

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM      +A+D+VN     +LTRI  + GEE+ A+RIA AIV++R   P +TT  
Sbjct: 140 PLDMRMDRTQERTAADIVNTYPASELTRIFRVYGEERFAARIAQAIVRQRAKEPVRTTGV 199

Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ L++  +  + + +  HPA R+FQALRI VN+E+  L + L +A   L   G ++V+S
Sbjct: 200 LADLVRSAIPAAARRSGGHPAKRAFQALRIEVNSELSILERALPAALSRLAVAGRIVVLS 259

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           +HSLEDR+ K+     S         +P        + +T+   +PT+++ A N 
Sbjct: 260 YHSLEDRITKRVLTELSTDSTPPGLPVPLPDRQPELRLLTRGAELPTEQETAANP 314


>gi|313772507|gb|EFS38473.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL074PA1]
 gi|313830652|gb|EFS68366.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL007PA1]
 gi|313833872|gb|EFS71586.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL056PA1]
 gi|314973654|gb|EFT17750.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL053PA1]
 gi|314976247|gb|EFT20342.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL045PA1]
 gi|314983544|gb|EFT27636.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL005PA1]
 gi|315096274|gb|EFT68250.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL038PA1]
 gi|327325910|gb|EGE67700.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL096PA2]
 gi|327446210|gb|EGE92864.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL043PA2]
 gi|327447807|gb|EGE94461.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL043PA1]
 gi|328760593|gb|EGF74161.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL099PA1]
          Length = 337

 Score =  331 bits (850), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 110/321 (34%), Positives = 168/321 (52%), Gaps = 11/321 (3%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNP--APGK-VILDATFGAGGYSRSFCKMGSN--VIA 63
           M++    +   H+PV+  +++ LL      G+ V +D T G GG++ +  +   +  ++ 
Sbjct: 3   MATDAIGSDAVHIPVMRARILDLLAVVLKSGRRVHVDGTLGMGGHAEAVLRRFPDVELVG 62

Query: 64  LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDC 120
           +DRD  A++  +  +  + ++  L  A   +L + + D G   VD V+ DLG+SS QID 
Sbjct: 63  IDRDQQALTMAEARLEPFADRVHLVHAVHDELPEVLDDLGLDYVDSVLLDLGLSSFQIDE 122

Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS+    PLDMRM  S G +A+ ++N+++   L R+L   GEEK A RI  AIV  
Sbjct: 123 VERGFSYSVDSPLDMRMDQSSGRTAAQILNESDPGALVRMLREYGEEKFADRIVRAIVTE 182

Query: 180 RQSAPFQTTQDLSSLIQKTVYF--SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
           R   P +T+  L  +I   +     +    HPA R+FQALRI VN E+E L   L  A  
Sbjct: 183 RDRQPIETSGRLVEIITGAIPATVRRKRHSHPAKRTFQALRIAVNREMETLPAVLPRALD 242

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297
            L  GG + V+S+HSLEDR VK+ F             +   +  A F  +T+    P  
Sbjct: 243 RLDVGGRIAVLSYHSLEDRPVKEAFRDACADTAPAGLPMVPESMAAKFNPVTRGAERPDA 302

Query: 298 EDVAFNRRSRSAKLRAGMRTV 318
           ++VA N RS SA+LR   R  
Sbjct: 303 DEVATNPRSASARLRVIERVR 323


>gi|289449724|ref|YP_003474673.1| S-adenosyl-methyltransferase MraW [Clostridiales genomosp. BVAB3
           str. UPII9-5]
 gi|289184271|gb|ADC90696.1| S-adenosyl-methyltransferase MraW [Clostridiales genomosp. BVAB3
           str. UPII9-5]
          Length = 362

 Score =  331 bits (850), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 111/325 (34%), Positives = 172/325 (52%), Gaps = 10/325 (3%)

Query: 8   TMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIAL 64
            M          HVPVLL + +  L+       +D T G  G+S +  +    G  + A 
Sbjct: 28  AMREETRSLQFSHVPVLLTECLKALDLKANGTYVDCTAGGAGHSAAILQRLGSGGRLFAF 87

Query: 65  DRDPFAVSCGQETMRDYKEQFS--LFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQID 119
           D+DP A       +   K   +  L  A F+ L++ +  + V   DG++ DLGVSS Q+D
Sbjct: 88  DKDPTARQAAAAKLAQVKTAATYELIAADFASLREELSKRNVFAVDGILADLGVSSPQLD 147

Query: 120 CGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178
            G+RGF+++  GPLDMRM+ + G +A+D++   +   LTRI+   GEE+ A+RIA A+VK
Sbjct: 148 TGERGFAYRLEGPLDMRMNPTCGRTAADILRLEDQATLTRIMREYGEERYAARIAAAVVK 207

Query: 179 RRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
            R++ P   T +L  LI K V  + +  + HPA R FQ+LRI VN+E+  L + L+ A  
Sbjct: 208 TRETKPLTGTGELVDLICKAVPAAARREKQHPAKRVFQSLRIAVNDELGALRKLLQQAPG 267

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297
            LK  G L++++FHSLEDRLVK+ F            +       +  ++     +V  +
Sbjct: 268 LLKPDGHLVIITFHSLEDRLVKQAFRRWERPCRCPSGLPCVCGLASQGKADPPHGLVAGK 327

Query: 298 EDVAFNRRSRSAKLRAGMRTVERSI 322
            ++A N RSRSA++R   R     +
Sbjct: 328 TELAENPRSRSARVRVFRRNANPPL 352


>gi|319782840|ref|YP_004142316.1| S-adenosyl-methyltransferase MraW [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317168728|gb|ADV12266.1| S-adenosyl-methyltransferase MraW [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 344

 Score =  331 bits (850), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 139/287 (48%), Positives = 189/287 (65%), Gaps = 3/287 (1%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77
             H+PVLL +V+  L PA G +I+D TFGAGGY+R+    G++V+A+DRDP A++ G++ 
Sbjct: 22  ARHIPVLLAEVLEALVPAQGDLIIDGTFGAGGYTRAILATGASVVAIDRDPDAIAAGRDL 81

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
                 +  L QA FS L ++V     DG+V D+GVSSMQ+D  +RGFSF+  GPLDMRM
Sbjct: 82  EVQSGGRLRLVQAPFSTLDEHVE--SADGIVLDIGVSSMQLDQAERGFSFRADGPLDMRM 139

Query: 138 SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK 197
           + SG+SA+DVVN     DL RI G LGEE+ A RIA  I  RR+  PF+ T +L+  I+ 
Sbjct: 140 AQSGLSAADVVNSFKPGDLARIFGFLGEERHAGRIARMIEARREKRPFERTLELADAIET 199

Query: 198 TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRL 257
            +  +  ++IHPATR FQALRIFVN+E+ ELA+ L +AE+ALK GG L VV+FHSLEDR+
Sbjct: 200 HIGRAPKDKIHPATRVFQALRIFVNDELGELAKALFAAERALKPGGRLAVVTFHSLEDRI 259

Query: 258 VKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           VK+F A R+      RH+  ++A  A F+      V     +VA N 
Sbjct: 260 VKRFIADRADVATGSRHLPEAHARTATFRKAGGG-VTAGDAEVAANP 305


>gi|326919741|ref|XP_003206136.1| PREDICTED: probable S-adenosyl-L-methionine-dependent
           methyltransferase METT5D1-like [Meleagris gallopavo]
          Length = 410

 Score =  331 bits (850), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 137/359 (38%), Positives = 191/359 (53%), Gaps = 44/359 (12%)

Query: 2   ESKSCKTMSSAIHHTIGD------HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC 55
           E  + K+ +  + H+  +      H+PV++E+VI  L+P  G+  LD TFGAGG+S +  
Sbjct: 51  EQTTQKSETKELLHSTENKNFGRLHIPVMVEEVINCLSPQSGQRFLDMTFGAGGHSTALL 110

Query: 56  KMGSNV--IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVV 108
           +  SN+   ALDRDP A    Q+    Y +Q       FSQ +  +   GV     DGV+
Sbjct: 111 EKASNITIYALDRDPTAYKIAQQLSESYPKQIQALLGQFSQSEALLISSGVEPGTLDGVL 170

Query: 109 FDLGVSSMQIDCGDRGFSFQKSGPLDMRMS----CSGISASDVVNQANVKDLTRILGILG 164
            D G SSMQ D  +RGFS QK GPLDMRM         +A+DVVN  + + L  IL   G
Sbjct: 171 LDAGCSSMQFDTPERGFSLQKDGPLDMRMDSDRYPDMPTAADVVNALDQQALASILRTYG 230

Query: 165 EEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSK--------NNRIHPATRSFQA 216
           EEK A +IA AIV+ R   P   TQ L+S++      S             H AT++FQ 
Sbjct: 231 EEKHAKKIASAIVQARSIYPITRTQQLASIVAGAFPASALYARKDLLQRPTHVATKTFQG 290

Query: 217 LRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF-------ASRSGKV 269
           LRIFVN+E+ EL  GL++AEK LK GG L+ +SFHSLEDR++K+F            G  
Sbjct: 291 LRIFVNDELHELLIGLKTAEKFLKPGGRLVALSFHSLEDRIIKRFLHGIDMTEKYNLGSR 350

Query: 270 MAVRHMIPSNAHP------------AVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
             +R  + + +              + +  I KKV+ P  +D+  N R+RSAKLRA ++
Sbjct: 351 QKIRRALKNCSKEENTQEFPHGKSNSKWTFIQKKVLTPQAKDILTNPRARSAKLRAAVK 409


>gi|260220007|emb|CBA27114.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Curvibacter putative symbiont of Hydra magnipapillata]
          Length = 311

 Score =  331 bits (850), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 128/315 (40%), Positives = 170/315 (53%), Gaps = 21/315 (6%)

Query: 15  HTIGDHVPVLLEKVIALL--------NPAPGKVILDATFGAGGYSRSFCKMG---SNVIA 63
                H  VLL + +  L        + A     +DATFG GG+SRS          +IA
Sbjct: 2   EAPRTHTTVLLNEAVDALFSDGGTPFDAASLATYVDATFGRGGHSRSILSRLDASGRLIA 61

Query: 64  LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDR 123
            DRDP AV+           +FS+    FS L   +P   V GV+ DLGVSS QID  +R
Sbjct: 62  FDRDPEAVAQA---ALITDPRFSIRHEGFSNLG-VLPSGSVGGVLMDLGVSSPQIDSPER 117

Query: 124 GFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GFSF+  GPLDMRM  + G S +  +  A +  +  ++   GEE+ A  IA AIV RRQ 
Sbjct: 118 GFSFRFEGPLDMRMDTTRGESVAQWLETAEINQIAEVIREYGEERFAGSIAKAIVARRQE 177

Query: 183 A-PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
             P  TT +L+ L+  TV   +  + +PATR+FQA RIF+N E+EEL Q L ++ + L+ 
Sbjct: 178 RGPISTTSELAQLVADTVKTREPGQ-NPATRTFQAFRIFINAELEELQQALDASLEVLQP 236

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           GG L V+SFHSLEDR+VK+F A  S +    R      A P V +      + P+ E+VA
Sbjct: 237 GGRLAVISFHSLEDRIVKQFIAKHSKEEYDRRAPF---AAPKVMKLKALGRIKPSAEEVA 293

Query: 302 FNRRSRSAKLRAGMR 316
            N RSRSA LR   R
Sbjct: 294 ANPRSRSAILRVAQR 308


>gi|146281460|ref|YP_001171613.1| S-adenosyl-methyltransferase MraW [Pseudomonas stutzeri A1501]
 gi|145569665|gb|ABP78771.1| S-adenosyl-methyltransferase MraW [Pseudomonas stutzeri A1501]
          Length = 293

 Score =  331 bits (849), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 111/295 (37%), Positives = 165/295 (55%), Gaps = 14/295 (4%)

Query: 35  APGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91
                 LD TFG GG+SR   +       ++  D+DP A++ GQ  +     +F + Q +
Sbjct: 2   RADGRYLDGTFGRGGHSRLLLQQLGPNGQLLGFDKDPLAIATGQA-LAAEDGRFVVVQRS 60

Query: 92  FSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASD 146
           F++L D V  +G    V G++ DLGVSS Q+D   RGFSF   GPLDMRM  S G+SA++
Sbjct: 61  FAELGDEVAQRGWTGAVSGILLDLGVSSPQLDDPIRGFSFLNDGPLDMRMDPSRGVSAAE 120

Query: 147 VVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNR 206
            +  A+  ++ R+    GEE+ A R+A A+V+RR  APF+ T DL+ ++       +  +
Sbjct: 121 WIASADEDEIARVFKDYGEERFAKRMARAVVQRRAEAPFERTADLAKVLTDANPAWEKGK 180

Query: 207 IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRS 266
             PATR+FQ LRI +NNE+ +L +GL +A  AL+ GG L+V+SFHSLEDR+VK+F    +
Sbjct: 181 -SPATRAFQGLRIHINNELGDLERGLDAALDALEVGGRLVVISFHSLEDRIVKQFMRRHA 239

Query: 267 G---KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318
                 +     I   A     + I  K    ++ +V  N RSRSA +R   +  
Sbjct: 240 KGEADKLPRDLPIIPKAFEPRLKLI-GKPQYASEAEVKANPRSRSAVMRVAEKVR 293


>gi|314968074|gb|EFT12173.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL037PA1]
          Length = 337

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 110/321 (34%), Positives = 169/321 (52%), Gaps = 11/321 (3%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNP--APGK-VILDATFGAGGYSRSFCKMGSN--VIA 63
           M++    +   H+PV+  +++ LL      G+ V +D T G GG++ +  +   +  ++ 
Sbjct: 3   MATDAIGSDAVHIPVMRARILDLLAVVLKSGRRVHVDGTLGMGGHAEAVLRRFPDVELVG 62

Query: 64  LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDC 120
           +DRD  A++  +  +  + ++  L  A   +L + + D G   VD V+ DLG+SS QID 
Sbjct: 63  IDRDQQALTMAEARLEPFADRVHLVHAVHDELLEVLDDLGLDYVDSVLLDLGLSSFQIDE 122

Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS+    PLDMRM  S G +A+ ++N+++   L R+L   GEEK A RI  AIV  
Sbjct: 123 VERGFSYSVDSPLDMRMDQSSGRTAAQILNESDPGALVRMLREYGEEKFADRIVRAIVTE 182

Query: 180 RQSAPFQTTQDLSSLIQKTVYF--SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
           R   P +T+  L  +I + +     +    HPA R+FQALRI VN E+E L   L  A  
Sbjct: 183 RDRQPIETSGRLVEIITEAIPATVRRKRHSHPAKRTFQALRIAVNREMETLPAVLPRALD 242

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297
            L  GG + V+S+HSLEDR VK+ F             +   +  A F  +T+    P  
Sbjct: 243 RLDVGGRIAVLSYHSLEDRPVKEAFRDACADTAPAGLPMVPESMAAKFNPVTRGAERPDA 302

Query: 298 EDVAFNRRSRSAKLRAGMRTV 318
           ++VA N RS SA+LR   R  
Sbjct: 303 DEVATNPRSASARLRVIERVR 323


>gi|311895546|dbj|BAJ27954.1| putative S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Kitasatospora setae KM-6054]
          Length = 322

 Score =  330 bits (848), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 115/320 (35%), Positives = 182/320 (56%), Gaps = 12/320 (3%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIA 63
           MS+        H+PV+LE+ +  L PA   PG V++DAT G GG+S +         +IA
Sbjct: 1   MST--DSPAPRHIPVMLERCLDALAPAISTPGAVVVDATLGLGGHSEALLTRFPDVRLIA 58

Query: 64  LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120
           +DRDP A+    E +  + ++ +L  A + ++   + +  V    GV+FDLGVSSMQ+D 
Sbjct: 59  VDRDPRALELSAERLARFGDRATLVHAVYDEIPRVLDELDVPEVHGVLFDLGVSSMQLDE 118

Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            DRGF++ +  PLDMRM  + GISA++V+N     DL RIL + GEE+ A +IA A+++ 
Sbjct: 119 ADRGFAYSQDAPLDMRMDQTRGISAAEVLNTYGHGDLARILKVYGEERFAGKIASAVLRE 178

Query: 180 RQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R+  PF  +  L  L++  +  + +    +PA R+FQALRI VN E+E L + +  A  A
Sbjct: 179 REREPFTNSARLVELVRNAIPAATRRTGGNPAKRTFQALRIEVNGELEVLDRAIPGALDA 238

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L  GG ++V+S+ SLEDRLVK++F + +         +         + +T+   + T+E
Sbjct: 239 LAVGGRIVVMSYQSLEDRLVKQYFQAGATSTAPPGLPVIPEELQPWLKLLTRGAELATEE 298

Query: 299 DVAFNRRSRSAKLRAGMRTV 318
           ++  NRR+   +LR   R  
Sbjct: 299 EIEENRRAAPVRLRVAERIR 318


>gi|289426145|ref|ZP_06427891.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes SK187]
 gi|289153310|gb|EFD02025.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes SK187]
          Length = 337

 Score =  330 bits (848), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 110/321 (34%), Positives = 169/321 (52%), Gaps = 11/321 (3%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNP--APGK-VILDATFGAGGYSRSFCKMGSN--VIA 63
           M++    +   H+PV+  +++ LL      G+ V +D T G GG++ +  +   +  ++ 
Sbjct: 3   MATDAIGSDAVHIPVMRARILDLLAVVLKSGRRVHVDGTLGMGGHAEAVLRRFPDVELVG 62

Query: 64  LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDC 120
           +DRD  A++  +  +  + ++  L  A   +L + + D G   VD V+ DLG+SS QID 
Sbjct: 63  IDRDQQALTMAEARLESFADRVHLVHAVHDELPEVLDDLGLDYVDSVLLDLGLSSFQIDE 122

Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS+    PLDMRM  S G +A+ ++N+++   L R+L   GEEK A RI  AIV  
Sbjct: 123 VERGFSYSVDSPLDMRMDQSSGRTAAQILNESDPGALVRMLREYGEEKFADRIVRAIVTE 182

Query: 180 RQSAPFQTTQDLSSLIQKTVYF--SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
           R   P +T+  L  +I + +     +    HPA R+FQALRI VN E+E L   L  A  
Sbjct: 183 RDRQPIETSGRLVEIITEAIPATVRRKRHSHPAKRTFQALRIAVNREMETLPAVLPRALD 242

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297
            L  GG + V+S+HSLEDR VK+ F             +   +  A F  +T+    P  
Sbjct: 243 RLDVGGRIAVLSYHSLEDRPVKEAFRDACADTAPAGLPMVPESMAAKFNPVTRGAERPDA 302

Query: 298 EDVAFNRRSRSAKLRAGMRTV 318
           ++VA N RS SA+LR   R  
Sbjct: 303 DEVATNPRSASARLRVIERVR 323


>gi|213961666|ref|ZP_03389932.1| S-adenosyl-methyltransferase MraW [Capnocytophaga sputigena Capno]
 gi|213955455|gb|EEB66771.1| S-adenosyl-methyltransferase MraW [Capnocytophaga sputigena Capno]
          Length = 304

 Score =  330 bits (848), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 104/312 (33%), Positives = 160/312 (51%), Gaps = 17/312 (5%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPF 69
           ++     H+PVLL++ +  L   P    +D TFG GG+SR   K       + A D+   
Sbjct: 1   MNDNSSYHIPVLLQQSVEGLAIKPNGTYVDVTFGGGGHSREILKHLGNEGRLFAFDQ--- 57

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFS 126
                        ++F+L Q  F  L+ Y+   GV   DGV+ D GVSS Q D  +RGFS
Sbjct: 58  --DTDAAANAIADDRFTLIQQNFKYLRQYLRFYGVTQVDGVLGDFGVSSHQFDVAERGFS 115

Query: 127 FQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
            +  G LDMRM+ +  +SA ++VN+ + +DL+R+    GE K A  IA AI+  R   P 
Sbjct: 116 TRFEGTLDMRMNQNATVSAKEIVNEYDEEDLSRLFFNYGELKNAKAIARAIINYRAQKPI 175

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           Q   +L   ++  +   K N++    + +QA+RI VN E+E L   L      +K GG +
Sbjct: 176 QLGSELQEAVKSFLPKFKENKV--LAQIYQAIRIEVNGEMEALESFLLQLPDVVKLGGRI 233

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
            ++S+HSLEDR VK+F      +    +    + + P  F+ +   ++ PT  ++A N R
Sbjct: 234 SLISYHSLEDRAVKRFIRDGQLEGTPEKDWFGNVSVP--FKKV-GGLITPTDSEIAMNNR 290

Query: 306 SRSAKLRAGMRT 317
           +RSAKLR   R 
Sbjct: 291 ARSAKLRIAERI 302


>gi|126435853|ref|YP_001071544.1| S-adenosyl-methyltransferase MraW [Mycobacterium sp. JLS]
 gi|262825143|sp|A3Q1M6|RSMH_MYCSJ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|126235653|gb|ABN99053.1| S-adenosyl-methyltransferase MraW [Mycobacterium sp. JLS]
          Length = 324

 Score =  330 bits (848), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 121/318 (38%), Positives = 180/318 (56%), Gaps = 18/318 (5%)

Query: 19  DHVPVLLEKVIALLNPA-----PGK---VILDATFGAGGYSRSFCKMGS--NVIALDRDP 68
           +H+PVLL++ + LL PA     P     V++DAT GAGG++  F       ++I LDRDP
Sbjct: 2   EHIPVLLDRCVELLTPALTRRNPDGRGAVLVDATLGAGGHAHRFLSDLPGLHLIGLDRDP 61

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGF 125
            A+    E +  + ++ SL +  +  + D +   GV    G +FDLGVSSMQ+D  +RGF
Sbjct: 62  QALQIAGERLAPFGDRVSLVRTRYDGIDDALAQTGVAEVSGFLFDLGVSSMQLDRTERGF 121

Query: 126 SFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           S+    PLDMRM     ++A+DVVN    KD+TRIL   GEE+ A+RIA  IV+RR   P
Sbjct: 122 SYSADAPLDMRMDSDAPLTAADVVNTFAEKDITRILREFGEERFAARIAKHIVRRR---P 178

Query: 185 FQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
             TT +L  L+   +   ++    HPA R+FQALRI VN+E++ L   + +A  AL+ GG
Sbjct: 179 LNTTGELVELLYDAIPAPARRTGGHPAKRTFQALRIAVNSELDSLRAAIPAALGALETGG 238

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            ++V+++ SLEDR+VK  FA+ +         +    H   F ++T+     T E++  N
Sbjct: 239 RIVVMAYQSLEDRIVKTEFAAATASRTPPGLPVELPGHEPEFVALTRGAERATPEEIERN 298

Query: 304 RRSRSAKLRAGMRTVERS 321
            RS   +LRA  +   R 
Sbjct: 299 PRSAPVRLRALEKVAGRP 316


>gi|254372569|ref|ZP_04988058.1| S-adenosyl-methyltransferase [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570296|gb|EDN35950.1| S-adenosyl-methyltransferase [Francisella novicida GA99-3549]
          Length = 305

 Score =  330 bits (848), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 118/309 (38%), Positives = 178/309 (57%), Gaps = 16/309 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76
            H  VLL++ I  LN  P  + +DATFG GG+S++         +IA D+D  A+S  +E
Sbjct: 1   MHYSVLLQESINDLNINPQGIYIDATFGRGGHSKAILNRLTTGRLIAFDKDLDAISYARE 60

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +     F +  A+F+ + DY         +DG++ DLGVSS Q+D   RGFSF  +GP
Sbjct: 61  NFQF--SNFEIVHASFASIYDYCLQHSLLGKIDGIIMDLGVSSPQLDNAARGFSFTHNGP 118

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTTQD 190
           LDMRM  S GI+AS  + + +V DL+ I  + GEE+ A +IA  I    +Q+    TT +
Sbjct: 119 LDMRMDVSKGITASQALEELSVDDLSYIFKVYGEERFAKKIALRIKDYIQQNGSISTTLE 178

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ LI+ T+   K  + +PATR FQALRI+VNNE+++L   L +    +K+GG +  +SF
Sbjct: 179 LAELIRATI--GKKEKKNPATRCFQALRIYVNNELKDLEALLENILAVIKSGGRIAAISF 236

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH---MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           HSLEDR+VK+ F++       +     M+P ++     + ITKK     ++++  N RSR
Sbjct: 237 HSLEDRIVKQKFSALINPKQELNRITKMLPQDSSQIKLKWITKKS-KANEDELNQNVRSR 295

Query: 308 SAKLRAGMR 316
           SA LR   +
Sbjct: 296 SAILRVVEK 304


>gi|282862166|ref|ZP_06271229.1| S-adenosyl-methyltransferase MraW [Streptomyces sp. ACTE]
 gi|282563191|gb|EFB68730.1| S-adenosyl-methyltransferase MraW [Streptomyces sp. ACTE]
          Length = 312

 Score =  330 bits (848), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 117/309 (37%), Positives = 177/309 (57%), Gaps = 13/309 (4%)

Query: 24  LLEKVIALLNPA------PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQ 75
           +L++ + LL PA         V++D T G GG+S +         +IALDRD  A+    
Sbjct: 1   MLQRCLDLLAPALEATGPRPPVVVDCTLGLGGHSEALLSAFPEARLIALDRDKEALRLSG 60

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E +  Y ++ +L  A + +L + +   G   V GV+FDLGVSSMQ+D  DRGF++ +  P
Sbjct: 61  ERLAAYGDRATLVHAVYDELPEVLDRLGIPKVQGVLFDLGVSSMQLDEADRGFAYAQDAP 120

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + GI A++V+N     +L RIL   GEEKQA RI  A+V+ R+  PF  +  L
Sbjct: 121 LDMRMDQTTGIGAAEVLNTYPPGELVRILRAYGEEKQAKRIVSAVVREREKEPFSNSARL 180

Query: 192 SSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             LI+ ++   +K    +PA R+FQALRI VN E+  L + + +A ++L  GG + V+S+
Sbjct: 181 VELIRDSLPQAAKRTGGNPAKRTFQALRIEVNGELTVLERAIPAAVRSLAVGGRIAVLSY 240

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDRLVK+  A+ +         +    +    + +T+   +PT+E+VA NRR+  A+
Sbjct: 241 HSLEDRLVKQVLAAGAANTAPPGLPVVPERYQPRLKLLTRGAELPTEEEVAENRRAAPAR 300

Query: 311 LRAGMRTVE 319
           LR   R  E
Sbjct: 301 LRGAERIRE 309


>gi|241664315|ref|YP_002982675.1| S-adenosyl-methyltransferase MraW [Ralstonia pickettii 12D]
 gi|262825232|sp|C6BEJ1|RSMH_RALP1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|240866342|gb|ACS64003.1| S-adenosyl-methyltransferase MraW [Ralstonia pickettii 12D]
          Length = 319

 Score =  330 bits (848), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 113/323 (34%), Positives = 179/323 (55%), Gaps = 23/323 (7%)

Query: 11  SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRD 67
           +    T   H  VLL++ +  L      + +D TFG GG+SR   +    G  ++A D+D
Sbjct: 2   TTQTSTGLRHQTVLLDEAVDALIWRDDGIYIDGTFGRGGHSRRILERLGPGGRLVAFDKD 61

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRG 124
           P A++           +F++   +F+Q+   +  +G   V GV+ DLG+SS QID G+RG
Sbjct: 62  PAAITEAG---TVEDARFAIEHDSFAQMAQCLDARGIERVAGVLLDLGISSPQIDEGERG 118

Query: 125 FSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR--- 180
           FSF+  GPLDMRM  + GI+A+  + +A+ +D+ R++   GEE+ A +IA AIV RR   
Sbjct: 119 FSFRMDGPLDMRMDTTRGITAAQWLAEADERDIARVIRDYGEERFAVQIAKAIVARRGQS 178

Query: 181 -QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
               P   T +L++L+ + V   +     PATR+FQALRI VN E+ +L  GL++A   L
Sbjct: 179 GDRGPLDRTSELAALVAQAVKT-REKGQDPATRTFQALRIHVNQELADLETGLKAAFDRL 237

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPS------NAHPAVFQSITKKVV 293
           + GG L+V+SFHSLEDR+VK+F  + +    +    +               + + +  V
Sbjct: 238 EQGGRLVVISFHSLEDRIVKRFMQALARPEQSAAPELRRAPLRAHELPAPQLRLLGR--V 295

Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316
            P++ +V+ N R+RSA +R   R
Sbjct: 296 KPSEAEVSANPRARSAIMRVAER 318


>gi|255082159|ref|XP_002508298.1| predicted protein [Micromonas sp. RCC299]
 gi|226523574|gb|ACO69556.1| predicted protein [Micromonas sp. RCC299]
          Length = 363

 Score =  330 bits (848), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 108/307 (35%), Positives = 165/307 (53%), Gaps = 17/307 (5%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77
             HVPVL+ +V+   +    +  +D T GAGG++ +  +    +         +   Q  
Sbjct: 65  APHVPVLMRQVLDAFDGRSLRCYVDGTMGAGGHASAIIRAHPELRTFVGFDLRIHTVQSN 124

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
            R  +E+ +  Q         + D GVD ++ DLGVSSM +D  +RGFSF   GPLDMRM
Sbjct: 125 FRHMRERLAELQ---------LADGGVDAILMDLGVSSMHLDTPERGFSFMNDGPLDMRM 175

Query: 138 SCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
             S  +SA+DVVN+   +++ R++   GEEK    +A  I   R  AP +TT+ L   + 
Sbjct: 176 GPSAKMSAADVVNEWPEEEIARVIRDYGEEKHWRLLARRICDARGIAPIETTRQLVHALG 235

Query: 197 KT--VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           +   V   ++  IHPATR+FQ +RI VN E+  + + + +A  AL  GG L +++FHSLE
Sbjct: 236 RIPGVKKGRSGGIHPATRTFQGIRIAVNEELAVVEEAIPAAVDALAPGGRLAIITFHSLE 295

Query: 255 DRLVKKFFASRSGKVMAVRHMI-----PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           D+LVK+ F + +G   A    +        A P + + +T+K VV   ++V  N RSRSA
Sbjct: 296 DKLVKRAFRTFAGIAPASDRPLSAWEPQPEAPPKIVKLVTRKPVVADDDEVGANARSRSA 355

Query: 310 KLRAGMR 316
           KLR   +
Sbjct: 356 KLRVCEK 362


>gi|53803411|ref|YP_114850.1| S-adenosyl-methyltransferase MraW [Methylococcus capsulatus str.
           Bath]
 gi|115311584|sp|Q604V0|RSMH_METCA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|53757172|gb|AAU91463.1| S-adenosyl-methyltransferase MraW [Methylococcus capsulatus str.
           Bath]
          Length = 301

 Score =  330 bits (848), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 115/304 (37%), Positives = 178/304 (58%), Gaps = 11/304 (3%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRD 80
           +L +V+ +L   P  + +D TFG GG+SR+  +       ++A+DRD  AV+    T   
Sbjct: 1   MLSEVLEMLAVRPDGIYVDCTFGRGGHSRAILERLGPEGRLLAIDRDLEAVAAAGATGLS 60

Query: 81  YKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
              +F +    FS +  +V  +G    VDG++ DLGVSS Q+D   RGFSF ++GPLDMR
Sbjct: 61  ADARFGIEHGRFSDVGRFVGARGWTGRVDGILMDLGVSSPQLDNARRGFSFLRAGPLDMR 120

Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M  +   +A++ + + + ++L R+L   GEE+ A RIA A+V+ R+  P  TT DL  LI
Sbjct: 121 MDPTQKTTAAEWLAEVSERELARVLRDYGEERFAGRIARAVVEERRRRPIVTTTDLVRLI 180

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           +  + F K+   HPATR+FQA+RI VN+E+ +L QGL  A + L AGG L+V+SFHSLED
Sbjct: 181 EAAIPF-KDKFKHPATRTFQAIRIAVNDELGQLQQGLNEAVEVLAAGGRLVVISFHSLED 239

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           R+VK+F    +        +  + + P +  ++  K +    +++  N R+RSA LRA  
Sbjct: 240 RIVKRFMRDEARGREMAGGIFETRSCPRL--AVLGKPLKAGDDEIRINPRARSALLRAAE 297

Query: 316 RTVE 319
           +   
Sbjct: 298 KRAA 301


>gi|320352815|ref|YP_004194154.1| S-adenosyl-methyltransferase MraW [Desulfobulbus propionicus DSM
           2032]
 gi|320121317|gb|ADW16863.1| S-adenosyl-methyltransferase MraW [Desulfobulbus propionicus DSM
           2032]
          Length = 306

 Score =  330 bits (848), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 97/301 (32%), Positives = 166/301 (55%), Gaps = 25/301 (8%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRD 80
           +L++V+  L P P  + +D T G GG++++  +       V+  + D  A    ++ +  
Sbjct: 1   MLDEVLHWLQPRPNALYVDGTLGLGGHAQAILEQTAPSGRVVGFEWDDDAAQAARQRLSG 60

Query: 81  YKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
           Y ++ S+   ++  L   +   GV   +G++ DLGVSS+Q+D  +RGFSF+    LDMRM
Sbjct: 61  YGDRLSIVHGSYGDLVPELAKLGVVEIEGLLVDLGVSSLQLDRAERGFSFRTDSVLDMRM 120

Query: 138 SC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
              S ++A+ ++ QA+ + L  I    GEE+QA RIA  + + R+  P  TT  L++++ 
Sbjct: 121 DRRSPLTAASLIAQASEEQLADIFYHYGEERQARRIARFLAEAREKEPVATTGRLAAIVA 180

Query: 197 KTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           + V       ++H AT+ FQALRI VN E+  L + L++A + L  G  + +++FHSLED
Sbjct: 181 EAVPRKYHPAKVHVATKVFQALRIAVNGELNNLTRLLQTAPQVLAEGARVCIITFHSLED 240

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           R+VK+ F +                    ++ +T++ V P+ E++  N R+RSAKLR   
Sbjct: 241 RIVKQAFQNN-----------------PAYEVVTRRPVEPSAEEIRRNPRARSAKLRVAR 283

Query: 316 R 316
           R
Sbjct: 284 R 284


>gi|187932019|ref|YP_001892004.1| S-adenosyl-methyltransferase MraW [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|263447507|sp|B2SDL2|RSMH_FRATM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|187712928|gb|ACD31225.1| S-adenosyl-methyltransferase MraW [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 305

 Score =  330 bits (848), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 118/309 (38%), Positives = 179/309 (57%), Gaps = 16/309 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76
            H  VLL++ I  LN  P  + +DATFG GG+S++         +IA D+D  A+S  +E
Sbjct: 1   MHYSVLLQESINDLNINPQGIYIDATFGRGGHSKAILNRLTTGRLIAFDKDLDAISYARE 60

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +     F +  A+F+ + DY         +DG++ DLGVSS Q+D   RGFSF  +GP
Sbjct: 61  NFQF--SNFEIVHASFASIYDYCLQHSLLGKIDGIIMDLGVSSPQLDNAARGFSFTHNGP 118

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTTQD 190
           LDMRM  S GI+AS  + + +V DL+ I  + GEE+ A +IA  I    +Q+   +TT +
Sbjct: 119 LDMRMDVSKGITASQALEELSVDDLSYIFKVYGEERFAKKIALRIKDYIQQNGSIRTTLE 178

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ LI+ T+   K  + +PATR FQALRI+VNNE+++L   L +    +K+GG +  +SF
Sbjct: 179 LAELIRATI--GKKEKKNPATRCFQALRIYVNNELKDLEALLENILAVIKSGGRIAAISF 236

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH---MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           HSLEDR+VK+ F++       +     M+P ++     + ITKK     ++++  N RSR
Sbjct: 237 HSLEDRIVKQKFSALINPKQELNRITKMLPQDSSQIKLKWITKKS-KANEDELNQNVRSR 295

Query: 308 SAKLRAGMR 316
           SA LR   +
Sbjct: 296 SAILRVVEK 304


>gi|325473769|gb|EGC76957.1| S-adenosyl-L-methionine-dependent methyltransferase mraW [Treponema
           denticola F0402]
          Length = 315

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 101/306 (33%), Positives = 159/306 (51%), Gaps = 8/306 (2%)

Query: 20  HVPVLLEKVIALLNPA-PGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76
           H  VLLE+ +  L P     + +D T G GG++ +F K    +  I +D D       +E
Sbjct: 5   HTSVLLEECLEFLKPDVSDNLFVDGTLGEGGHTEAFLKRYPQLNAIGVDADVSIQERAKE 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV--DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
            ++ + E+         +     P      + ++ DLG+S        RGFSF    PLD
Sbjct: 65  RLKPFGERIRFHLGWSDEFFKNYPKDSAPPNLILLDLGISMFHYVKSGRGFSFSSDEPLD 124

Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MR++    +SA+D+VN  N KDL  ++   GEE+ + +IA  IV++R +A F T ++L+ 
Sbjct: 125 MRLNPELRLSAADIVNSYNEKDLADLIFNYGEERYSRKIASRIVEQRAAAAFSTAKELAD 184

Query: 194 LIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            I K V  + ++ +IHPAT++FQALRI VN E++ L + L +A   L   G L +++FHS
Sbjct: 185 CIYKAVPQNYRHGKIHPATKTFQALRIAVNGELDRLPRLLEAAFSVLAPNGRLGLITFHS 244

Query: 253 LEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK +F           +  I         + +TKK V  + E++  N  SRSA+L
Sbjct: 245 LEDRIVKFYFKELGKSCTCPENMPICKCGGRPRAEVLTKKAVKASDEEIRLNPPSRSARL 304

Query: 312 RAGMRT 317
           R   + 
Sbjct: 305 RVVRKI 310


>gi|300112935|ref|YP_003759510.1| S-adenosyl-methyltransferase MraW [Nitrosococcus watsonii C-113]
 gi|299538872|gb|ADJ27189.1| S-adenosyl-methyltransferase MraW [Nitrosococcus watsonii C-113]
          Length = 318

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 115/317 (36%), Positives = 180/317 (56%), Gaps = 11/317 (3%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M      +   H PVLL +VI  L      + +D TFG GG++++          ++ +D
Sbjct: 1   MDKNKTSSSHQHQPVLLREVIQALAIRRDGIYIDGTFGRGGHAQAILAALSSEGRLLGVD 60

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCG 121
           +DP A++ G    +    +F++ QA+   L   V ++G    ++G +FDLGVSS Q++  
Sbjct: 61  KDPAAIAAGHALAQK-DGRFTIVQASIGDLARVVSERGWLRKINGALFDLGVSSPQLENA 119

Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF + GPLDMRM+ + G SA++ +  A  K++  +L + GEE+   RIA AI++ R
Sbjct: 120 ERGFSFLQDGPLDMRMNPAVGQSAAEWLANAKEKEIAEVLRVYGEERYCRRIARAIIQAR 179

Query: 181 QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
                  T+ L+ ++ K +      RIHPATRSFQA+RIF+N+E+EEL   L  A  AL 
Sbjct: 180 GLNSLTRTKQLAEVVAKAIP-RWERRIHPATRSFQAIRIFINHELEELRAALEQALAALA 238

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
             G L V+SFHSLEDR+VK+FF  ++ G+ + +   +           +  K + P  E+
Sbjct: 239 VKGRLAVISFHSLEDRIVKRFFREKARGEDLPLDLPVMQEDFQQASLKVLGKPIWPVPEE 298

Query: 300 VAFNRRSRSAKLRAGMR 316
           +A N R+RSA+LR   +
Sbjct: 299 IAHNPRARSARLRVAEK 315


>gi|258649007|ref|ZP_05736476.1| S-adenosyl-methyltransferase MraW [Prevotella tannerae ATCC 51259]
 gi|260850623|gb|EEX70492.1| S-adenosyl-methyltransferase MraW [Prevotella tannerae ATCC 51259]
          Length = 312

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 108/319 (33%), Positives = 167/319 (52%), Gaps = 18/319 (5%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           M+ A       H+PVLL+  +  LN  P    +D TFG GG+SR   +       ++A D
Sbjct: 1   MTDAAPD---YHIPVLLQTTVDGLNVRPDGCYVDCTFGGGGHSREILRRLGPNGRLLAFD 57

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGD 122
           +D  A    Q  +   +++ +  Q+ F  L +++   G   VDG++ DLGVSS   D  D
Sbjct: 58  QDADA----QRNIPAGEDRLTFVQSNFRYLPNWLHYYGYAQVDGILADLGVSSHHFDAAD 113

Query: 123 RGFSFQKSGPLDMRMSCSGIS-ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF+  G LDMRM+    + A+ VVN  + + L  +  + GE     R+A AI+K R 
Sbjct: 114 RGFSFRFEGALDMRMNKRAHTSAAGVVNTYSEEQLANLFYLYGELNNGRRLAAAIIKARA 173

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
           +AP +  + L  ++   +  ++  +     + FQALRI VN+E+E L   L +A   LK 
Sbjct: 174 AAPIERVEQLVDVVTPYLGAARAKK--DMAKVFQALRIEVNHEMEALEAMLTAALTLLKP 231

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           GG L ++++HSLEDRLVK F  + +      +    +   P   + +  +V+ P + ++ 
Sbjct: 232 GGRLAILTYHSLEDRLVKNFIKAGNATGKVEQDFYGNRLAP--MKPVNGRVIRPDEAEMN 289

Query: 302 FNRRSRSAKLRAGMRTVER 320
            N RSRSAKLR G    ER
Sbjct: 290 ANPRSRSAKLRIGECIAER 308


>gi|94676738|ref|YP_588954.1| S-adenosyl-methyltransferase MraW [Baumannia cicadellinicola str.
           Hc (Homalodisca coagulata)]
 gi|263445957|sp|Q1LSW0|RSMH_BAUCH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|94219888|gb|ABF14047.1| S-adenosyl-methyltransferase MraW [Baumannia cicadellinicola str.
           Hc (Homalodisca coagulata)]
          Length = 317

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 118/314 (37%), Positives = 183/314 (58%), Gaps = 22/314 (7%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H+PVLL + +  LN     + +D TFG GG+SR           ++A+DRDP A++ G+
Sbjct: 7   KHIPVLLNEAVTALNIKKDGIYIDGTFGRGGHSRLILSKLGNKGRLLAIDRDPAAIAAGR 66

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                +  +F++ Q  FS + DY+ +      +DG++ DLG+SS Q+   DRGFSF+ +G
Sbjct: 67  NI---HDLRFTIVQRPFSTIADYIAELNLIGCIDGILLDLGISSPQLADPDRGFSFRHNG 123

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM  + GISA + + QA+V+++T +L   GEE+ A RI+ AI  + +     +T +
Sbjct: 124 KLDMRMDTTCGISAREWLKQASVQEMTWVLQHFGEERFAKRISQAIFHQNRRRLITSTSE 183

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ LI   V +S  ++ HPATRSFQA+RI++NNE++E+ Q L SA   L  GG L+V+SF
Sbjct: 184 LAKLITTIVPWSNKHK-HPATRSFQAIRIYINNELKEIEQVLNSALNILAIGGKLVVISF 242

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPA--------VFQSITKKVVVPTQEDVAF 302
           HSLEDRLVK F    S   +    +  +    A          +++ K  + P+ +++  
Sbjct: 243 HSLEDRLVKYFINKHSKLPLPPTGISLTEKQIADLYKNRHLTLKNLGK--IRPSIQEIKV 300

Query: 303 NRRSRSAKLRAGMR 316
           N R+RSA LR   +
Sbjct: 301 NPRARSALLRFAEK 314


>gi|212715550|ref|ZP_03323678.1| hypothetical protein BIFCAT_00448 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660917|gb|EEB21492.1| hypothetical protein BIFCAT_00448 [Bifidobacterium catenulatum DSM
           16992]
          Length = 343

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 109/307 (35%), Positives = 160/307 (52%), Gaps = 11/307 (3%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCG 74
           H PVLL   + L+ PA   PG + +D T G  G+S +F K   +  +I +DRD  A++  
Sbjct: 8   HQPVLLRDCVDLVAPALANPGSIAVDCTLGLAGHSTAFLKASPHARLIGIDRDTEALALA 67

Query: 75  QETM--RDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQK 129
            + M      ++F    A F      + D+G+D    V  DLG+SS+QID  +RGFS+  
Sbjct: 68  TQRMQMEGLADRFIPVHAAFDDFAQVLDDQGIDQVNAVFMDLGLSSLQIDETERGFSYSH 127

Query: 130 SGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM     ++A  V+   +  DL RI    GEE+ + +IA AIV+RR+  P  T+
Sbjct: 128 DAPLDMRMDVTQPLTAEQVLADYSFADLARIFRTYGEERFSKQIARAIVRRREIEPLTTS 187

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ L+ + V  +     +PA R FQALRI VN E+++LA  L      L  GG L+V 
Sbjct: 188 GQLNRLVDEVVPQAHRPAGNPAKRVFQALRIEVNGELDKLAGTLPQIANHLAVGGRLVVE 247

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           S+HSLED+ VK F        +     +        F+ +T+  +    E++A N RS S
Sbjct: 248 SYHSLEDKTVKTFMNQGLKADVPADMPVIPPDMMPFFKELTRGAIKAGDEEIAMNPRSAS 307

Query: 309 AKLRAGM 315
            +LRA  
Sbjct: 308 VRLRAVE 314


>gi|118497204|ref|YP_898254.1| S-adenosylmethionine-dependent methyltransferase [Francisella
           tularensis subsp. novicida U112]
 gi|254374028|ref|ZP_04989510.1| S-adenosyl-methyltransferase [Francisella novicida GA99-3548]
 gi|263447525|sp|A0Q5I5|RSMH_FRATN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|118423110|gb|ABK89500.1| S-adenosylmethionine-dependent methyltransferase [Francisella
           novicida U112]
 gi|151571748|gb|EDN37402.1| S-adenosyl-methyltransferase [Francisella novicida GA99-3548]
 gi|328676676|gb|AEB27546.1| S-adenosyl-methyltransferase MraW [Francisella cf. novicida Fx1]
          Length = 305

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 118/309 (38%), Positives = 178/309 (57%), Gaps = 16/309 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76
            H  VLL++ I  LN  P  + +DATFG GG+S++         +IA D+D  A+S  +E
Sbjct: 1   MHYSVLLQESINDLNINPQGIYIDATFGRGGHSKAILNRLTTGRLIAFDKDLDAISYARE 60

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +     F +  A+F+ + DY         +DG++ DLGVSS Q+D   RGFSF  +GP
Sbjct: 61  NFQF--SNFEIVHASFASIYDYCLQHSLLGKIDGIIMDLGVSSPQLDNAARGFSFTHNGP 118

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTTQD 190
           LDMRM  S GI+AS  + + +V DL+ I  + GEE+ A +IA  I    +Q+    TT +
Sbjct: 119 LDMRMDVSKGITASQALEELSVDDLSYIFKVYGEERFARKIALRIKDYIQQNGSISTTLE 178

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ LI+ T+   K  + +PATR FQALRI+VNNE+++L   L +    +K+GG +  +SF
Sbjct: 179 LAELIRATI--GKKEKKNPATRCFQALRIYVNNELKDLEALLENILAVIKSGGRIAAISF 236

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH---MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           HSLEDR+VK+ F++       +     M+P ++     + ITKK     ++++  N RSR
Sbjct: 237 HSLEDRIVKQKFSALINPKQELNRITKMLPQDSSQIKLKWITKKS-KANEDELNQNVRSR 295

Query: 308 SAKLRAGMR 316
           SA LR   +
Sbjct: 296 SAILRVVEK 304


>gi|148695830|gb|EDL27777.1| methyltransferase 5 domain containing 1, isoform CRA_a [Mus
           musculus]
 gi|148695831|gb|EDL27778.1| methyltransferase 5 domain containing 1, isoform CRA_a [Mus
           musculus]
          Length = 339

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 134/334 (40%), Positives = 185/334 (55%), Gaps = 37/334 (11%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           H+PV++++V+  L P  G+V LD TFG+GG++R+  +   +V   ALDRDP A +  ++ 
Sbjct: 5   HIPVMVDQVVHCLAPQKGQVFLDMTFGSGGHTRAILQKEPDVMVYALDRDPVAYAIAEQL 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            R Y  Q       FSQ +  +   GV     DG++ DLG SSMQ+D  +RGFS +K GP
Sbjct: 65  SRLYPTQIQALLGQFSQAEALLMKAGVQPGTIDGILMDLGCSSMQLDAPERGFSLRKDGP 124

Query: 133 LDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           LDMRM         +ASDVVN  + + L  IL   GEEK A +IA AI++ R + P   T
Sbjct: 125 LDMRMDGDRYPDTPTASDVVNALDQQALASILRAYGEEKHAKKIASAIIQARSTYPISRT 184

Query: 189 QDLSSLIQKTVYFSK--------NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           Q L+S++      S             H AT++FQALRIFVNNE+ EL  GLR+AEK LK
Sbjct: 185 QQLASIVAGAFPPSAVYARKDLLQRSTHIATKTFQALRIFVNNELNELYAGLRTAEKFLK 244

Query: 241 AGGLLIVVSFHSLEDRLVKKF-------------FASRSGKVMAVRHMIPSNAH-----P 282
            GG L+ +SFHSLEDR+VK+F                +  +   +     +        P
Sbjct: 245 TGGRLVALSFHSLEDRIVKRFLLGISMTERFNLSIRQKVKQTSQLDSDQETEERHSVRAP 304

Query: 283 AVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
             ++ I KKV+ P  +DV  N R RSAKLRA ++
Sbjct: 305 LKWELIHKKVLTPEDQDVQDNPRGRSAKLRAAIK 338


>gi|148273048|ref|YP_001222609.1| S-adenosyl-methyltransferase MraW [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|263446039|sp|A5CS59|RSMH_CLAM3 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|147830978|emb|CAN01923.1| putative S-adenosyl-methyltransferase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 318

 Score =  330 bits (846), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 109/299 (36%), Positives = 163/299 (54%), Gaps = 9/299 (3%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           H PVLLE+ + LL PA    G V++DAT G  G+S +F        ++ LDRDP A++  
Sbjct: 7   HTPVLLERCLELLAPALQGEGAVLVDATLGMAGHSEAFLDALPGLRLVGLDRDPDALAIA 66

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            E +  + ++ +L    +  +   +   G   V GV FDLGVSS+Q+D  +RGFS+ +  
Sbjct: 67  GERLARFGDRVNLVHTVYDGIGRALDGLGIGEVQGVFFDLGVSSLQLDRVERGFSYSQDA 126

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM   +G++A+ VV + +  +L RI    GEEK A R A  IV+ R+  P  T+  
Sbjct: 127 PLDMRMDGTAGLTAAQVVAEYDELELRRIFYDYGEEKLAPRYASRIVQAREVEPITTSAR 186

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L  +IQ+    +     HPA R FQALRI VN E+  LA+ + +A   L  GG ++V S+
Sbjct: 187 LVEIIQQATPAAVQRAGHPAKRVFQALRIEVNQELSVLARAMPAAVDRLAVGGRVVVESY 246

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
            SLEDR+VK+   +RS     V   +    H    + + +   +  Q ++A N R+ S 
Sbjct: 247 QSLEDRIVKRELRARSTSTAPVGLPVELPEHRPELKLLVRGAELADQHEIAQNPRAASV 305


>gi|188997242|ref|YP_001931493.1| S-adenosyl-methyltransferase MraW [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|262825725|sp|B2V5J5|RSMH_SULSY RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|188932309|gb|ACD66939.1| S-adenosyl-methyltransferase MraW [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 293

 Score =  330 bits (846), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 110/306 (35%), Positives = 181/306 (59%), Gaps = 22/306 (7%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76
           +H  VL ++V+       G+V +DAT G GG+S    K   N+  I LD+D +A+   +E
Sbjct: 3   EHYSVLHKEVLEFSKLIEGEVFVDATVGGGGHSYLILKQNLNLKLIGLDKDDYALKVAKE 62

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +++++++ +L +++F  L   +     K ++G++FD GVS+ Q+   +RGFSFQ+   L
Sbjct: 63  RLKEFEDRITLVKSSFKDLDKVLQSLQIKEINGILFDFGVSTFQLKL-ERGFSFQREEFL 121

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  +  ++A D+VN    +DL  I+   GEEK AS+IA +IV+ R+    +TT++L+
Sbjct: 122 DMRMDTTQKLTAYDIVNYYREQDLYNIIKTYGEEKFASKIAKSIVEYRKKKKIETTKELA 181

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            ++ +    + ++ +IHPATR+FQA+RI VNNE++++ +GL  A   L   G+++ +SFH
Sbjct: 182 DIVYRCYPPNLRHGKIHPATRTFQAIRIEVNNELKDIEEGLEKAINLLAKNGIIMAISFH 241

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+VK  F                       + +TKK + P+ E++  N  SRSAKL
Sbjct: 242 SLEDRIVKNMFKKYK--------------ELKFLEILTKKPITPSDEEIKENPASRSAKL 287

Query: 312 RAGMRT 317
           R G R 
Sbjct: 288 RVGRRI 293


>gi|170781760|ref|YP_001710092.1| S-adenosyl-methyltransferase MraW [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|263446044|sp|B0RI49|RSMH_CLAMS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|169156328|emb|CAQ01476.1| S-adenosyl-methyltransferase [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 318

 Score =  330 bits (846), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 109/299 (36%), Positives = 161/299 (53%), Gaps = 9/299 (3%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           H PVLLE+ + LL PA    G V++DAT G  G+S +F        ++ LDRDP A++  
Sbjct: 7   HTPVLLERCLELLAPALQGEGAVLVDATLGMAGHSEAFLDALPGLRLVGLDRDPDALAIA 66

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            E +  + ++  L    +  +   +   G   V GV FDLGVSS+Q+D  +RGFS+ +  
Sbjct: 67  GERLARFGDRVHLVHTVYDGIGRALDGLGIGEVQGVFFDLGVSSLQLDRVERGFSYSQDA 126

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM   +G++A+ VV + +  +L RI    GEEK A R A  IV+ R+  P  T+  
Sbjct: 127 PLDMRMDGTAGLTAAQVVAEYDELELRRIFYDYGEEKLAPRYASRIVQAREVEPITTSAR 186

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L  +IQ+    +     HPA R FQALRI VN E+  LA+ + +A   L  GG ++V S+
Sbjct: 187 LVEIIQQATPAAVQRAGHPAKRVFQALRIEVNQELSVLARAMPAAIDRLAVGGRVVVESY 246

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
            SLEDR+VK+    RS     V   +    H    + + +   +  Q ++A N R+ S 
Sbjct: 247 QSLEDRIVKRELRVRSTSTAPVGLPVELPEHRPELKLLVRGAELADQHEIAQNPRAASV 305


>gi|91216023|ref|ZP_01252992.1| S-adenosyl-methyltransferase MraW [Psychroflexus torquis ATCC
           700755]
 gi|91186000|gb|EAS72374.1| S-adenosyl-methyltransferase MraW [Psychroflexus torquis ATCC
           700755]
          Length = 303

 Score =  330 bits (846), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 103/304 (33%), Positives = 165/304 (54%), Gaps = 17/304 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H+PVLL++ +  ++  P    +D TFG GG+S            + A D+D  A     E
Sbjct: 9   HLPVLLKESVDGMSIQPEGTYVDVTFGGGGHSAEILSRLGEKGRLFAFDQDQDAQENSIE 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +F+L  A F  ++ ++  +GV   DG++ D GVSS Q D G+RGFS +    L
Sbjct: 69  -----DPRFTLIPANFRFIKRFLRLEGVNEVDGILGDFGVSSHQFDKGERGFSIRFEAEL 123

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  + G+ AS++VN  + + L +++   GE K + ++A AIV+RR   P ++T+DL+
Sbjct: 124 DMRMDQNTGLGASELVNTYSQEQLAQLIWQYGEIKMSRKLAKAIVERRIIEPIKSTKDLN 183

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            L+      +K N+     + +QA+RI VN E+E L + L    + +  GG L ++S+HS
Sbjct: 184 DLLTPFFPPTKVNK--FLAQVYQAIRIEVNQEMEALKEFLLQTSELITKGGRLSLISYHS 241

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDRLVK+F           +    +   P  F+ +  K++ P   ++  N+RSRSAKLR
Sbjct: 242 LEDRLVKRFIRDGKFSGAPEKDFYGNMLVP--FKKV-GKMITPGAAELQKNKRSRSAKLR 298

Query: 313 AGMR 316
            G +
Sbjct: 299 IGEK 302


>gi|171920499|ref|ZP_02931791.1| S-adenosyl-methyltransferase MraW [Ureaplasma parvum serovar 1 str.
           ATCC 27813]
 gi|171902972|gb|EDT49261.1| S-adenosyl-methyltransferase MraW [Ureaplasma parvum serovar 1 str.
           ATCC 27813]
          Length = 308

 Score =  330 bits (846), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 105/310 (33%), Positives = 160/310 (51%), Gaps = 12/310 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI---ALDRDPFAVS 72
               H+ VLL + I LLN  P  + +D TFG GG+S+   K  S       LD+D  A++
Sbjct: 2   EFNQHITVLLNETIELLNIKPDGIYVDCTFGRGGHSQLILKKLSKKGKLICLDQDQEAIN 61

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK 129
                 ++      + +  F  L+  +       VDG +FDLG+SS Q+D   RGFS+ K
Sbjct: 62  FANNLFKN-NTNVIVIKTNFKNLKSALGAHKIFYVDGFIFDLGLSSPQLDDPKRGFSYHK 120

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           +  LDMRM  S  ++A  +VN  +   L  I    GE K    IA AIVK R      TT
Sbjct: 121 NAWLDMRMDQSQNLNAHYIVNNYSFAKLVSIFKRYGEIKYPKIIADAIVKERSIKEINTT 180

Query: 189 QDLSSLIQKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L  +I+K     K   + HPA   FQA+RI VN+E+  L +    A   L   G++ +
Sbjct: 181 LELVEIIKKYSPKKKLFEKKHPARLFFQAIRIEVNDELNILEKAFNDAISMLNPLGVVAI 240

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +SFHSLED++VKK F + +   + +   +P N +   +  + +K ++P+ +++  N RSR
Sbjct: 241 ISFHSLEDKIVKKVFNNYAK--IKLPKEVPINNYVNKYSLLNQK-IMPSTQELNDNNRSR 297

Query: 308 SAKLRAGMRT 317
           S+ LR  +R 
Sbjct: 298 SSILRGLIRN 307


>gi|241765142|ref|ZP_04763130.1| S-adenosyl-methyltransferase MraW [Acidovorax delafieldii 2AN]
 gi|241365221|gb|EER60068.1| S-adenosyl-methyltransferase MraW [Acidovorax delafieldii 2AN]
          Length = 309

 Score =  330 bits (846), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 123/311 (39%), Positives = 173/311 (55%), Gaps = 17/311 (5%)

Query: 20  HVPVLLEKVIALLNPAPGK----VILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72
           H  VLL++ +  L    G       +DATFG GG+SR          +++A D+DP A+ 
Sbjct: 7   HTTVLLDEAVDALLGGAGAAPAGTWVDATFGRGGHSRRILLRLGPQGHLVAFDKDPEAIH 66

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                 R    +FS+    F  L + +P   V GV+ DLGVSS QID   RGFSF+  GP
Sbjct: 67  EAT---RITDARFSIRHEGFRHLAE-LPAGSVAGVLMDLGVSSPQIDSPGRGFSFRFDGP 122

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA-PFQTTQD 190
           LDMRM  + G S +  +  A V+ +  ++   GEE+ A  IA AIV RR+   P  TT +
Sbjct: 123 LDMRMDTTRGESVAQWLATAEVQQIAEVIRDYGEERFAGPIAKAIVARREERGPLATTAE 182

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ L+   V   +  + +PATR+FQALRIF+N E+EEL Q L ++   L+ GG L+V+SF
Sbjct: 183 LADLVAGAVKTREPGQ-NPATRTFQALRIFINAELEELQQALEASLSVLQPGGRLVVISF 241

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDR+VK+F A  S +V   R      A P V + +    + P+  +VA N R+RSA 
Sbjct: 242 HSLEDRIVKQFIAQHSKEVYDRRAPF---APPKVMKLVALDRIKPSAAEVAANPRARSAI 298

Query: 311 LRAGMRTVERS 321
           +R   RT   +
Sbjct: 299 MRVAERTEAPA 309


>gi|226307047|ref|YP_002767007.1| methyltransferase MraW [Rhodococcus erythropolis PR4]
 gi|262825456|sp|C1A0Y3|RSMH_RHOE4 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|226186164|dbj|BAH34268.1| methyltransferase MraW [Rhodococcus erythropolis PR4]
          Length = 332

 Score =  329 bits (845), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 112/330 (33%), Positives = 173/330 (52%), Gaps = 18/330 (5%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKMGS- 59
           M+         HVPVLL +   LL PA         G  ++DAT G GG+S  F      
Sbjct: 1   MNEPSDADGFAHVPVLLHRADDLLGPAITAVGDGGEGAYMIDATLGLGGHSEFFLGKYPG 60

Query: 60  -NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLG 112
            ++I LDRD  A+    E +  + ++ +    T+  ++D +   G      V  ++FDLG
Sbjct: 61  LHLIGLDRDTNALRIASERLAPFADRTTFVHTTYDGIEDALEQAGLPSTESVHAILFDLG 120

Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASR 171
           VSSMQ+D  DRGF++    PLDMRM  + G++A++V+N  +  DL RIL   GEE+ A +
Sbjct: 121 VSSMQLDEADRGFAYSIDAPLDMRMDQTVGLTAAEVLNTYSHGDLARILSTYGEERFAGK 180

Query: 172 IAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQ 230
           IA  I+++R+  PF T+  L  L+ +T+  + +    HPA R+FQALRI VN E++ L  
Sbjct: 181 IASEILRQREREPFTTSAALVELLYRTIPAATRRTGGHPAKRTFQALRIEVNAELDSLRA 240

Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK 290
            + +   AL  GG ++ +S+ SLEDR+VK     RS         +        F+ +T+
Sbjct: 241 AVPAGLDALAVGGRVVFMSYQSLEDRVVKAELVPRSKSTSPEGLPVELPGMGPEFRILTR 300

Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMRTVER 320
                +++++  N RS   +LRA  R   R
Sbjct: 301 GAERASEQEIEENPRSAPVRLRAAERISRR 330


>gi|320106390|ref|YP_004181980.1| S-adenosyl-methyltransferase MraW [Terriglobus saanensis SP1PR4]
 gi|319924911|gb|ADV81986.1| S-adenosyl-methyltransferase MraW [Terriglobus saanensis SP1PR4]
          Length = 319

 Score =  329 bits (845), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 121/311 (38%), Positives = 170/311 (54%), Gaps = 28/311 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQE 76
           HVPVL ++V+  LN   G    DAT G GG+S            +I  DRDP A++  + 
Sbjct: 6   HVPVLYDEVLNFLNVRAGGTYADATLGLGGHSSGIARLLGAKGTLICFDRDPEAMTKAKA 65

Query: 77  T-------MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
                   + D           FS+ +D +    +DG++ D GVSS+Q+D   RGFSF+ 
Sbjct: 66  RFEALAVELGDTMPTVRFEPRAFSEAKDVIKPGSLDGLLADFGVSSLQLDEAHRGFSFRF 125

Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM   SG +A  VVNQA+ ++L  ++   GEE+++ RIA AIV+ R   P +TT
Sbjct: 126 EGPLDMRMDTRSGETAEQVVNQADEEELANLIYEFGEERRSRRIARAIVRAR---PIRTT 182

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+ +I       K+++IHPATR+FQALRI VN+E+ E+   L SA   LK GG L V+
Sbjct: 183 AELAKVISVAAPSMKSDKIHPATRTFQALRIRVNDELGEIRTLLESAPSLLKVGGRLAVI 242

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDRLVK      +   +              +  I KK +   ++++  N RSRS
Sbjct: 243 SFHSLEDRLVKDATRDGARDGI--------------WNLIEKKPITAGEDEIQRNPRSRS 288

Query: 309 AKLRAGMRTVE 319
           AKLR   R  +
Sbjct: 289 AKLRVAERIAD 299


>gi|237749177|ref|ZP_04579657.1| S-adenosyl-methyltransferase MraW [Oxalobacter formigenes OXCC13]
 gi|229380539|gb|EEO30630.1| S-adenosyl-methyltransferase MraW [Oxalobacter formigenes OXCC13]
          Length = 319

 Score =  329 bits (845), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 110/310 (35%), Positives = 175/310 (56%), Gaps = 18/310 (5%)

Query: 20  HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSC 73
           H  VLL++ +  L         + +D TFG GG+SR   +       +IA D+DP AVS 
Sbjct: 6   HDSVLLKEAVDALAIEGDRVNGIFIDGTFGRGGHSRLILERLGGEGRLIAFDKDPEAVSV 65

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130
             +       +F +   +F+ L + + +KG+   DG++ DLG+SS Q++   RGFSF+  
Sbjct: 66  AGKI---TDPRFEIVHKSFADLGEVLEEKGIEMIDGILLDLGISSPQVEDAARGFSFRLE 122

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
           GPLDMRM  + G+SA++ +     + +  ++   GEE+ A +IA AIV  R   P  +T+
Sbjct: 123 GPLDMRMDSTRGLSAAEWLAVETEEKIAEVIHQYGEERFAFQIAKAIVACRTIKPIDSTK 182

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            L+ ++   V   +  + +PATR+FQA+RIF+N E+EEL  GL++A + L+  G + V+S
Sbjct: 183 QLAEIVAGAVKTFEKGK-NPATRTFQAIRIFINRELEELEIGLQAAWQHLRLNGRMSVIS 241

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           FHSLEDR+VKKF + ++   M  R +     +      + + K    P++ +V+ N RSR
Sbjct: 242 FHSLEDRIVKKFLSGKAKVDMPDRRLPIRAIDLPQPEMKLLGK--QKPSKAEVSKNARSR 299

Query: 308 SAKLRAGMRT 317
           SA LR   R 
Sbjct: 300 SAILRIATRV 309


>gi|313617974|gb|EFR90135.1| S-adenosyl-methyltransferase MraW [Listeria innocua FSL S4-378]
          Length = 274

 Score =  329 bits (845), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 91/270 (33%), Positives = 157/270 (58%), Gaps = 6/270 (2%)

Query: 55  CKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDL 111
                ++ A D+D  A+   +  + +Y ++ +  ++ F  +++ + ++G   VDG+++DL
Sbjct: 4   LNEQGHLFAFDQDQTAIDNAKIKLAEYSDRVTFIKSNFRYMKEALNERGIEAVDGILYDL 63

Query: 112 GVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQAS 170
           GVSS Q+D  +RGFS+ +   LDMRM     ++A  VVN+ + +DL RI    GEEK + 
Sbjct: 64  GVSSPQLDERERGFSYHQDAALDMRMDQEQELTAKKVVNEWSYQDLIRIFFQYGEEKFSK 123

Query: 171 RIAHAIVKRRQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELA 229
           +IA  I +RR+  P +TT +L  +I+  +   ++    HP  R+FQA+RI VN+E+  + 
Sbjct: 124 QIAREIERRREVKPIETTGELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVE 183

Query: 230 QGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSI 288
             L +A   LK GG + V++FHSLEDR+ K  F   + G  +     +  + +   F+  
Sbjct: 184 DSLENALTLLKPGGRISVITFHSLEDRITKHLFQEATKGPDLPPGLPVIPDEYKPDFKLA 243

Query: 289 TKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318
           T+K +VP++E++  N R+RSAKLR   + +
Sbjct: 244 TRKPIVPSEEELEQNNRARSAKLRVIEKII 273


>gi|237756569|ref|ZP_04585091.1| S-adenosyl-methyltransferase MraW [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237691269|gb|EEP60355.1| S-adenosyl-methyltransferase MraW [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 293

 Score =  329 bits (845), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 109/306 (35%), Positives = 177/306 (57%), Gaps = 22/306 (7%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76
           +H  VL  +V+       G + +DAT G GG+S    K   N+  I LD+D FA+   +E
Sbjct: 3   EHYSVLHREVLEFSKLVAGGIFVDATVGGGGHSYLILKQNPNLKLIGLDKDDFALKVAKE 62

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +++++++ +L +++F  L   +     + ++G++FD GVS+ Q+   +RGFSFQ+   L
Sbjct: 63  RLKEFEDRITLLKSSFKDLDKVLQSLQIREINGILFDFGVSTFQLKL-ERGFSFQREEFL 121

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  +  ++A DVVN    +DL  I+   GEEK AS+IA +I + R+    +TT++L+
Sbjct: 122 DMRMDTTQKLTAYDVVNYYREQDLYNIIKTYGEEKFASKIAKSIAEYRKKKKIETTKELA 181

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            ++ +    + ++ +IHPATR+FQA+RI VNNE++++ +GL  A   L   G ++ +SFH
Sbjct: 182 DIVYRCYPPNLRHGKIHPATRTFQAIRIEVNNELKDIEEGLEKAINLLAKNGTIMAISFH 241

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+VK  F                       + +TKK + P+ E++  N  SRSAKL
Sbjct: 242 SLEDRIVKNTFKKYK--------------ELKFLEILTKKPITPSDEEIKENPASRSAKL 287

Query: 312 RAGMRT 317
           R G R 
Sbjct: 288 RVGRRI 293


>gi|108757260|ref|YP_633751.1| S-adenosyl-methyltransferase MraW [Myxococcus xanthus DK 1622]
 gi|122980788|sp|Q1D0S2|RSMH_MYXXD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|108461140|gb|ABF86325.1| S-adenosyl-methyltransferase MraW [Myxococcus xanthus DK 1622]
          Length = 304

 Score =  329 bits (845), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 117/311 (37%), Positives = 170/311 (54%), Gaps = 12/311 (3%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDP 68
           M+++       H  VLL + + LL PA G+VI+D T G GG+S +    G+ V+ +DRDP
Sbjct: 1   MTASDFQ----HQTVLLREAVDLLRPADGRVIIDGTLGGGGHSEALLASGATVVGVDRDP 56

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK-GVDGVVFDLGVSSMQIDCGDRGFSF 127
            A++     +     +F      F++L     D   VDGV+ DLGVSS Q+D  +RGFSF
Sbjct: 57  VALAAATARLGA-NPRFQGRAGNFAELPRVAADLLPVDGVLVDLGVSSPQLDVAERGFSF 115

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
            K GPLDMRM   G +A++++   + ++L RIL   GEE  A  IA  + K         
Sbjct: 116 SKDGPLDMRMGPDGPTAAELIATTDERELVRILKDYGEEPFARPIARELKKALP----TR 171

Query: 188 TQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T + + ++++ V      NRIH ATR+FQALR+ VN E+E L   L +    LK GG   
Sbjct: 172 TLEAAEVVKRAVPRKAWPNRIHVATRTFQALRMAVNGELEALDALLAAIPGLLKVGGRAA 231

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           V++FHSLEDR VK+ F + +G+        +   +    F  +TKK V  ++ +V  N R
Sbjct: 232 VIAFHSLEDRKVKEAFRALAGRCTCPPGLPVCVCSGVGDFALVTKKAVAASEAEVEANPR 291

Query: 306 SRSAKLRAGMR 316
           SRSA LR   +
Sbjct: 292 SRSAHLRVVEK 302


>gi|332882630|ref|ZP_08450242.1| S-adenosyl-methyltransferase MraW [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332679430|gb|EGJ52415.1| S-adenosyl-methyltransferase MraW [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 304

 Score =  329 bits (845), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 108/316 (34%), Positives = 164/316 (51%), Gaps = 21/316 (6%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALD 65
           MS +I +    H+PVLL++ I  L   PG   +D TFG GG+SR           + A D
Sbjct: 1   MSDSISY----HIPVLLKQSIDGLAIKPGGTYVDVTFGGGGHSREILNRLGENGRLYAFD 56

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGD 122
           +D  A++   +       +F+L    F  L+ Y+   GV   DGV+ D GVSS Q D  +
Sbjct: 57  QDADALNNTID-----DPRFTLIHQNFKYLKQYLRFYGVSEVDGVLGDFGVSSHQFDVAE 111

Query: 123 RGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFS +  G LDMRM+  S ++A  VVN+ +   LTRI  + GE K A  IA AI+  RQ
Sbjct: 112 RGFSTRFEGALDMRMNQQSELTAQQVVNEYDEAALTRIFSLYGELKNARAIARAIIAFRQ 171

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
             P +    L   ++  +   K N++    + +Q++RI VN E+E L   L      +K 
Sbjct: 172 HTPIRLGSTLQEAVRAFLPKFKENKV--LAQIYQSIRIEVNAEMEVLESFLLQLPAVVKV 229

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           GG + ++S+HSLEDR VK+F      +    +    + + P  F+ +   +++P + ++ 
Sbjct: 230 GGRISLISYHSLEDRCVKRFIRDGQMEGAPEKDWYGNVSVP--FKKV-GGLILPDEAEIT 286

Query: 302 FNRRSRSAKLRAGMRT 317
            N R+RSAKLR   R 
Sbjct: 287 INNRARSAKLRIAERI 302


>gi|294101810|ref|YP_003553668.1| S-adenosyl-methyltransferase MraW [Aminobacterium colombiense DSM
           12261]
 gi|293616790|gb|ADE56944.1| S-adenosyl-methyltransferase MraW [Aminobacterium colombiense DSM
           12261]
          Length = 300

 Score =  329 bits (845), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 115/310 (37%), Positives = 179/310 (57%), Gaps = 26/310 (8%)

Query: 19  DHVPVLLEKVIALL-NPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQ 75
           +H+PV+L++VI  L N    ++I+DAT G GGY+     +     ++ +DRD  A+S  Q
Sbjct: 3   EHIPVMLKEVIESLKNVESPQMIVDATLGLGGYAEEILNVFPATLLVGIDRDEQAISLAQ 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGV--DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           + +  + E+  ++ + FS +   +  +    DG+VFDLGVS++Q+   +RGFSFQ  GPL
Sbjct: 63  KRLVSFAERVHIYNSPFSAIAMVLSKENAEPDGIVFDLGVSNLQLSSPERGFSFQNDGPL 122

Query: 134 DMRM----SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQTT 188
           DMRM      SG SA+ +VN  + K+L  I    GEE+ + RIA  IV+ R+   P Q T
Sbjct: 123 DMRMEGTSGESGYSAAQIVNTFSEKELADIFWKYGEERYSRRIATGIVRFREKNGPIQRT 182

Query: 189 QDLSSLIQKTVYFS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
             L   I+ ++     +    HPA + FQALRIFVN+E++EL +GL+ A ++L  GG+++
Sbjct: 183 FQLVEAIRSSLPAPVQRKMGGHPARKVFQALRIFVNDELQELEKGLQGALESLAPGGVIV 242

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           VVS+HSLEDR+VK                            +T++ + P++E+V  N ++
Sbjct: 243 VVSYHSLEDRIVKYAMKDWKTSDHGD--------------LLTRRPLKPSEEEVEKNYKA 288

Query: 307 RSAKLRAGMR 316
           RSAKLRA  +
Sbjct: 289 RSAKLRAFRK 298


>gi|77166320|ref|YP_344845.1| methyltransferase [Nitrosococcus oceani ATCC 19707]
 gi|254435207|ref|ZP_05048714.1| S-adenosyl-methyltransferase MraW [Nitrosococcus oceani AFC27]
 gi|88909205|sp|Q3J781|RSMH_NITOC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|76884634|gb|ABA59315.1| methyltransferase [Nitrosococcus oceani ATCC 19707]
 gi|207088318|gb|EDZ65590.1| S-adenosyl-methyltransferase MraW [Nitrosococcus oceani AFC27]
          Length = 315

 Score =  329 bits (845), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 114/313 (36%), Positives = 184/313 (58%), Gaps = 13/313 (4%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70
           ++ I  H PVLL + I  L      + +D TFG GG++++          ++ +D+DP A
Sbjct: 3   NNEISSHQPVLLREAIQALAIRRDGLYIDGTFGRGGHAQAILAALSSEGRLLGVDKDPAA 62

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFS 126
           ++ G    +    +F++ QA+   L   V ++G    ++GV+FDLGVSS Q++  +RGFS
Sbjct: 63  IAAGHALAQK-DGRFTIVQASIGDLARVVSERGWLKRINGVLFDLGVSSPQLESAERGFS 121

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           F + GPLDMRM+ + G SA++ +  A  K++  +L + GEE+   RIA AI++ R+    
Sbjct: 122 FLRDGPLDMRMNPTVGQSAAEWLANAKEKEIAEVLRVYGEERYCRRIARAIIQARELNSL 181

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
             T+ L+ ++ K +      R+HPATRSFQA+RIF+N+E+EEL   L  A  AL   G L
Sbjct: 182 TRTKQLAEVVAKAIP-RWERRMHPATRSFQAIRIFINHELEELRAALEQALAALAVKGRL 240

Query: 246 IVVSFHSLEDRLVKKFFASRSG--KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            V+SFHSLEDR+VK+FF  ++   ++     ++  +   A  + +  K + P  E++A N
Sbjct: 241 AVISFHSLEDRIVKRFFREKARGEELPPDLPVMQKDFQQASLKVL-GKPIWPVPEEIAHN 299

Query: 304 RRSRSAKLRAGMR 316
            R+RSA+LR   +
Sbjct: 300 PRARSARLRVAEK 312


>gi|329895271|ref|ZP_08270913.1| S-adenosyl-methyltransferase MraW [gamma proteobacterium IMCC3088]
 gi|328922393|gb|EGG29736.1| S-adenosyl-methyltransferase MraW [gamma proteobacterium IMCC3088]
          Length = 305

 Score =  329 bits (845), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 115/305 (37%), Positives = 167/305 (54%), Gaps = 9/305 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
            H  VLLE+ +  L        +D TFG GG++R+   + ++   V+ +D+DP A+   Q
Sbjct: 1   MHESVLLEESLQGLVGPLSGRYVDGTFGRGGHTRALLALLNDDAAVLVMDKDPQAIEVAQ 60

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +     + S++  +F+ L D +      GVDGV+ DLGVSS Q+D  +RGFSFQ+ GP
Sbjct: 61  A-LAAEDGRVSVYHGSFADLPDALRQLGWAGVDGVLLDLGVSSPQLDQDERGFSFQRQGP 119

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM   SG + ++ +   +  DL  +L   GEE+ A RIA AIVK R  +P  TT  L
Sbjct: 120 LDMRMDNSSGQTVAEYLQGVSETDLISVLRDYGEERFARRIAAAIVKARADSPITTTLQL 179

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + L++      + ++ HPATR+FQALRI +N E+E+L   L      L   G L V+SFH
Sbjct: 180 AELVKAAHPRWEKHK-HPATRTFQALRIAINRELEDLDVLLDVVVDCLSPSGRLAVISFH 238

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR VK+F    S      R +           ++  K + P++ +V  N R+RSA L
Sbjct: 239 SLEDRKVKQFMRKASQGPKVPRGVPVQGDTMRGPLALVGKAIKPSEREVQANVRARSAVL 298

Query: 312 RAGMR 316
           R   R
Sbjct: 299 RIAER 303


>gi|327399188|ref|YP_004340057.1| Ribosomal RNA small subunit methyltransferase H [Hippea maritima
           DSM 10411]
 gi|327181817|gb|AEA33998.1| Ribosomal RNA small subunit methyltransferase H [Hippea maritima
           DSM 10411]
          Length = 297

 Score =  329 bits (845), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 126/312 (40%), Positives = 182/312 (58%), Gaps = 27/312 (8%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
            H  VLL++ I  L P  G + +D T GA G++    K+ S    VIA D+D  A+   Q
Sbjct: 2   KHKSVLLKETITTLQPRNGGIYIDMTLGAAGHTEKLLKLSSPSGIVIAFDKDQDAIKHAQ 61

Query: 76  ETMRD-YKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           E +++ Y ++  L    ++ +++++       VDGV+ DLGVS  Q+   DRGFSF    
Sbjct: 62  EKLKETYGDRLILINDDYANIKEHLRRLEIDEVDGVIMDLGVSLDQLK-SDRGFSFNIDA 120

Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  +  ++A  +VN  ++++L RI+ + GEE  A RIA AIVK R   P  TT++
Sbjct: 121 PLDMRMDKNKPLTAEKIVNHWDMEELERIIRLYGEENFARRIAKAIVKNR---PIHTTKE 177

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ LI+ TV  S + RIHPATR+FQALRI VN+E+E L +GL+ A +ALK  G++  +SF
Sbjct: 178 LAELIELTVPRSVSRRIHPATRTFQALRIVVNDELESLQKGLKGAIEALKENGIICAISF 237

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDR+VK                        V + + KK + PT ++V  N+ SRSAK
Sbjct: 238 HSLEDRIVKNILRDYK--------------QKGVLRLLNKKPIRPTPQEVKSNKHSRSAK 283

Query: 311 LRAGMR-TVERS 321
           LR  ++ T E S
Sbjct: 284 LRCALKLTREDS 295


>gi|152992227|ref|YP_001357948.1| S-adenosyl-methyltransferase MraW [Sulfurovum sp. NBC37-1]
 gi|262825720|sp|A6Q7Y2|RSMH_SULNB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|151424088|dbj|BAF71591.1| S-adenosyl-methyltransferase MraW [Sulfurovum sp. NBC37-1]
          Length = 307

 Score =  329 bits (844), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 100/299 (33%), Positives = 167/299 (55%), Gaps = 8/299 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76
            H+PVLLE+V+   +  P    +D T G  G+S    K   ++  I +DRD  A++  ++
Sbjct: 4   PHIPVLLEEVLESFSRVPEGYFVDCTLGYAGHSSEILKRYDHLKHIGIDRDDEALAFSKK 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
            +  ++++ +L++ TF+ +   + +  V  ++ D GVSS+Q+D  +RGF+F     LDMR
Sbjct: 64  RLEPFRDRSTLYKGTFATVLPTLKEAPVTALLADFGVSSLQLDKKERGFAFDSE-TLDMR 122

Query: 137 MSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M  +  +SA +VVN    + L  I    GE +   ++A A+V  R  AP ++ + LS + 
Sbjct: 123 MDANAPLSAYEVVNTYPKEKLEYIFDTYGEVRSYKKLASAVVDARAKAPIESAKALSEIA 182

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           +  +      +IHPAT  FQA+RI VNNE+ E+   L + E     G ++ +++FHSLED
Sbjct: 183 KGVIPPG--GKIHPATLMFQAIRIEVNNELGEIEGLLDAIEAKHYEGEVVSLITFHSLED 240

Query: 256 RLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           RLVK  F   S + +   H          A+ +++++K V  ++E++  N RSRSAKLR
Sbjct: 241 RLVKNRFRKWSQECICDPHAIRCTCGKKHALGKALSRKPVTASKEELRVNPRSRSAKLR 299


>gi|282854266|ref|ZP_06263603.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes J139]
 gi|282583719|gb|EFB89099.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes J139]
          Length = 346

 Score =  329 bits (844), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 112/321 (34%), Positives = 170/321 (52%), Gaps = 11/321 (3%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNP--APGK-VILDATFGAGGYSRSFCKMGSN--VIA 63
           M++    +   HVPV+  +++ LL      G+ V +D T G GG++ +  +   +  ++ 
Sbjct: 12  MATDAIGSDAVHVPVMRARILDLLAVVLKSGRRVHVDGTLGMGGHAEAVLRRFPDVELVG 71

Query: 64  LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDC 120
           +DRD  A++  +  +  + ++  L  A   +L + + D G   VD V+ DLG+SS QID 
Sbjct: 72  IDRDQQALTMAEARLEPFADRVHLVHAVHDELPEVLDDLGLDYVDSVLLDLGLSSFQIDE 131

Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS+    PLDMRM  S G +A+ ++N+++  DL R+L   GEEK A RI  AIV  
Sbjct: 132 VERGFSYSVDSPLDMRMDQSSGRTAAQILNESDPGDLVRMLREYGEEKFADRIVRAIVTE 191

Query: 180 RQSAPFQTTQDLSSLIQKTVYF--SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
           R   P +T+  L  +I + +     +    HPA R+FQALRI VN E+E L   L  A  
Sbjct: 192 RDRQPIETSGRLVEIITEAIPATVRRKRHSHPAKRTFQALRIAVNREMETLPAVLPRALN 251

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297
            L  GG + V+S+HSLEDR VK+ F             +   +  A F  +T+    P  
Sbjct: 252 RLDVGGRIAVLSYHSLEDRPVKEAFRDACADTAPTGLPMVPESMAAKFNPVTRGAERPDA 311

Query: 298 EDVAFNRRSRSAKLRAGMRTV 318
           ++VA N RS SA+LR   R  
Sbjct: 312 DEVATNPRSASARLRVIGRVR 332


>gi|206901857|ref|YP_002250979.1| S-adenosyl-methyltransferase MraW [Dictyoglomus thermophilum
           H-6-12]
 gi|263447293|sp|B5YEM1|RSMH_DICT6 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|206740960|gb|ACI20018.1| S-adenosyl-methyltransferase MraW [Dictyoglomus thermophilum
           H-6-12]
          Length = 297

 Score =  329 bits (844), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 110/305 (36%), Positives = 171/305 (56%), Gaps = 27/305 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H PV+L++VI  LN +PGK+++DAT G GG+S    +       +I +DRD   +   +E
Sbjct: 8   HKPVMLKEVIHYLNLSPGKIVVDATLGLGGHSSEILRELRGEGLLIGIDRDEEVLKLARE 67

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK-SGP 132
            +      F LF  T+  LQ+ + +     +D ++FDLG SS  I+   RGFSF +   P
Sbjct: 68  RLSKIAGNFVLFNTTYDNLQNILKELNLSFIDAILFDLGFSSFHIEKSGRGFSFMRPEEP 127

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMR S  + ++A+D++N  +  +L+ +    GEE  + ++A  IV+RR+   F    DL
Sbjct: 128 LDMRYSKDTALTAADILNTFSESELSNLFWEYGEEPLSKKLAKKIVERRKDKKFAYVGDL 187

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             +I + +   +    H AT+ FQALRI VN+E+    + L      L  GG ++V+++H
Sbjct: 188 LEVIDEVIPRRRR---HEATKVFQALRIAVNDELNIFKRALEQVPFILSIGGRIVVITYH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+VK FF S S K++                 ++KKV+ P+ E++  NRR+RSAKL
Sbjct: 245 SLEDRIVKNFFKSYSDKILP----------------VSKKVIKPSIEEIKENRRARSAKL 288

Query: 312 RAGMR 316
           R G R
Sbjct: 289 RVGER 293


>gi|332210617|ref|XP_003254406.1| PREDICTED: probable S-adenosyl-L-methionine-dependent
           methyltransferase METT5D1 [Nomascus leucogenys]
          Length = 407

 Score =  329 bits (843), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 130/335 (38%), Positives = 183/335 (54%), Gaps = 38/335 (11%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H+PV++++V+  L+P  G++ LD TFG+GG++++         + ALDRDP A +  +  
Sbjct: 72  HIPVMVDEVVHCLSPRKGQIFLDMTFGSGGHTKAXXXXXXXXXLYALDRDPTAYALAEHL 131

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              Y +Q       FSQ +  +   GV     DGV+ DLG SSMQ+D  +RGFS +K GP
Sbjct: 132 SELYPKQIRAMLGQFSQAEALLMKAGVQPGTFDGVLMDLGCSSMQLDTPERGFSLRKDGP 191

Query: 133 LDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           LDMRM         +A+DVVN  + + L  IL   GEEK A +IA AIV+ R   P   T
Sbjct: 192 LDMRMDGGRYPDMPTAADVVNALDQQALASILRTYGEEKHAKKIASAIVQARSIYPITRT 251

Query: 189 QDLSSLIQKTVYFSK--------NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           Q L+S++      S             H AT++FQALRIFVNNE+ EL  GL++A+K L+
Sbjct: 252 QQLASIVAGAFPPSAIYARKDLLQRSTHIATKTFQALRIFVNNELNELYMGLKTAQKFLR 311

Query: 241 AGGLLIVVSFHSLEDRLVKKFF-------------------ASRSGKVMAVRHMIPSNAH 281
            GG L+ +SFHSLEDR+VK+F                     S+ G        +     
Sbjct: 312 PGGRLVALSFHSLEDRIVKRFLLGISMTERFNLSVRQQVMKTSQLGSDYENTEEVSVRRA 371

Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           P +++ I KKV+ P  +DV  N R RSAKLRA ++
Sbjct: 372 PLMWELIHKKVLSPQDQDVQDNPRGRSAKLRAAIK 406


>gi|56476234|ref|YP_157823.1| S-adenosyl-methyltransferase MraW [Aromatoleum aromaticum EbN1]
 gi|68565443|sp|Q5P6Y9|RSMH_AZOSE RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|56312277|emb|CAI06922.1| S-adenosyl-methyltransferase mraW [Aromatoleum aromaticum EbN1]
          Length = 312

 Score =  329 bits (843), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 124/317 (39%), Positives = 170/317 (53%), Gaps = 17/317 (5%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           MS+A       HV VLL + +  L   PG V +D TFG GG+SR+          +IA D
Sbjct: 1   MSAAPQ-----HVTVLLAEAVEALAIRPGGVYVDGTFGRGGHSRAILAKLDADGRLIAFD 55

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGD 122
           RDP A+   +        + +   A FS   + +   G   VDGV+ DLGVSS Q+D   
Sbjct: 56  RDPRAIEVARAL---PDPRLTAVHAPFSAFAEELDRLGLEHVDGVLLDLGVSSPQLDEAA 112

Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RG SF+   PLDMRM  S G + +  +  A+V  +T +L   GEE+ A  IA AI   R 
Sbjct: 113 RGMSFRFDAPLDMRMDTSRGQTVAQWLADASVAQITEVLRDYGEERFAYAIAKAIAAARA 172

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
                +T+ L+ +++K V   +  + HPATRSFQALRIF+N E+EEL+  L +A + LK 
Sbjct: 173 GGAVASTRQLAEIVEKAVRTREPGQ-HPATRSFQALRIFINQELEELSLVLPAAVERLKP 231

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300
           GG L+ +SFHSLEDR+VK+F    S    +  R  + +   P     +  K   P   +V
Sbjct: 232 GGRLVAISFHSLEDRIVKRFMRDESRPPQLPSRLPLRAAELPQPRLRLVGKSQRPGPGEV 291

Query: 301 AFNRRSRSAKLRAGMRT 317
           A N RSRSA +R   RT
Sbjct: 292 AANPRSRSAVMRVAERT 308


>gi|313678556|ref|YP_004056296.1| S-adenosyl-methyltransferase MraW [Mycoplasma bovis PG45]
 gi|312950217|gb|ADR24812.1| S-adenosyl-methyltransferase MraW [Mycoplasma bovis PG45]
          Length = 300

 Score =  329 bits (843), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 106/305 (34%), Positives = 154/305 (50%), Gaps = 15/305 (4%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQ 75
             H+P+LL++ I  LN     + +D T G GG+S    K   N  ++  D+D FA+   +
Sbjct: 3   NKHIPILLKEAINSLNIKSNGIYVDLTVGMGGHSAEILKKLDNGMLVGFDKDLFAIEESR 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + +      F L  + F  + D +       VDG++ DLG+SS Q+D  +RGFS+ K   
Sbjct: 63  KRLSKIGLNFQLIHSDFVNVTDELAKLNITAVDGILVDLGISSPQVDNAERGFSYNKDAR 122

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+ +  + A  VVN  +  +L  I     E K A ++A+AI K R   P  TT +L
Sbjct: 123 LDMRMNTNQVLDAHFVVNNYDENNLISIFYNYAEVKLAKQVANAIAKNR---PINTTLEL 179

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           S +I+        ++ +P    FQA+RI VNNE   +   L  A   LK    L V+SFH
Sbjct: 180 SEIIKSAYPAKLLSQKNPCKAVFQAIRIEVNNEFSSIESMLSQALNLLKKDSSLAVISFH 239

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLED LVKKFF +        +  I  +    V      KV  P++ ++  N RSRSAKL
Sbjct: 240 SLEDSLVKKFFGNLIKSKHPSKMPIKEDKKYIV------KVYNPSKSEIELNNRSRSAKL 293

Query: 312 RAGMR 316
           R   +
Sbjct: 294 RVLTK 298


>gi|154488900|ref|ZP_02029749.1| hypothetical protein BIFADO_02209 [Bifidobacterium adolescentis
           L2-32]
 gi|154083037|gb|EDN82082.1| hypothetical protein BIFADO_02209 [Bifidobacterium adolescentis
           L2-32]
          Length = 343

 Score =  329 bits (843), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 108/307 (35%), Positives = 159/307 (51%), Gaps = 11/307 (3%)

Query: 20  HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           H PVLL   + L+ P    PG + +D T G  G+S +F K      +I +DRD  A++  
Sbjct: 8   HQPVLLRDCVDLVAPALAKPGSIAVDCTLGLAGHSTAFLKASPNARLIGIDRDTEALALA 67

Query: 75  QETMR--DYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQK 129
            + M      ++F+   A F      + D+GVD    V  DLG+SS+QID  +RGFS+  
Sbjct: 68  TKRMEMDGLADRFTPVHAAFDDFSQVLSDQGVDKVNAVFMDLGLSSLQIDETERGFSYSH 127

Query: 130 SGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM     ++A  V+ + +  DL RI    GEE+ + +IA  IV+RR++ P  T+
Sbjct: 128 DAPLDMRMDVTQPLTAEQVLAEYSFADLVRIFRTYGEERFSKQIAREIVRRRETEPLTTS 187

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ L+ + V  +     +PA R FQALRI VN E+++LA  L      L  GG L+V 
Sbjct: 188 GQLNRLVDEVVPQAHRPAGNPAKRVFQALRIEVNGELDKLAGTLPQIANHLAVGGRLVVE 247

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           S+HSLED+ VK F              +        F+ +T+  +    E++A N RS S
Sbjct: 248 SYHSLEDKTVKAFMNQGLKVDAPADMPVVPPDMMPFFKELTRGAIKADAEEIANNPRSAS 307

Query: 309 AKLRAGM 315
            +LRA  
Sbjct: 308 VRLRAVE 314


>gi|89891774|ref|ZP_01203276.1| S-adenosyl-methyltransferase, MraW family [Flavobacteria bacterium
           BBFL7]
 gi|89515929|gb|EAS18594.1| S-adenosyl-methyltransferase, MraW family [Flavobacteria bacterium
           BBFL7]
          Length = 304

 Score =  329 bits (843), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 107/314 (34%), Positives = 158/314 (50%), Gaps = 17/314 (5%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPF 69
           +      H PVLLE+ I  L   P  V +D T+G GG+SR           + A D+D  
Sbjct: 1   MTQQSSYHSPVLLEESIDGLAINPSGVYVDVTYGGGGHSREILSRLGEDGKLFAFDQDLD 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFS 126
           A+    E       +F+L    F  ++ ++   GV   DG++ DLGVSS Q D  DRGFS
Sbjct: 61  ALENVIE-----DPRFTLINQNFRFMKRFLRMYGVKEVDGILADLGVSSHQFDEADRGFS 115

Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
            +    LDMRM+  S + A  VVN     DL RI    GE + A R+  AI+ +RQ    
Sbjct: 116 TRFDARLDMRMNQESELDAVRVVNDYEEDDLNRIFKEYGELRIAPRLTRAIIAKRQEGLI 175

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           +T   L  +    V     +++    + FQA+RI VN E++ L + L  +++ LK GG L
Sbjct: 176 ETVAQLKEICAPFVPERIQHKM--LAQVFQAIRIEVNQEMDVLEEFLIQSKEILKTGGRL 233

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
            V+S+HSLEDR VK+F  +        + +    + P  F+ +  K+++PT   +  N R
Sbjct: 234 SVISYHSLEDRPVKRFMRNGLFHGEPEKDVFGRASVP--FKKV-GKLIIPTAAQIKENNR 290

Query: 306 SRSAKLRAGMRTVE 319
           +RSAKLR   R  +
Sbjct: 291 ARSAKLRIAQRIED 304


>gi|148244441|ref|YP_001219135.1| S-adenosyl-methyltransferase [Candidatus Vesicomyosocius okutanii
           HA]
 gi|263504496|sp|A5CX97|RSMH_VESOH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|146326268|dbj|BAF61411.1| S-adenosyl-methyltransferase [Candidatus Vesicomyosocius okutanii
           HA]
          Length = 307

 Score =  329 bits (843), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 96/308 (31%), Positives = 171/308 (55%), Gaps = 16/308 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H  V+  + +  LN     + +DATFG GG+++           +IA D+D  A+    +
Sbjct: 6   HQSVMFNESMYALNIKTDGIYIDATFGRGGHAQGILNRLSKKGRLIAFDQDINAIEYANK 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            +     + +L  + FS++   +  +G    +DG++ DLGVSS Q++   RGFSF+  GP
Sbjct: 66  NL--VDNRLTLIHSAFSKMLSIITKQGLIGRIDGILIDLGVSSPQLENAQRGFSFRVDGP 123

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+ + G+SA+  +  AN +++  ++     EK++  IA+ I K +++   +TT +L
Sbjct: 124 LDMRMNQTTGMSATQWLKSANEEEIANVIYQFSNEKKSRHIANKIKKYQKNHVLETTLEL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           ++++ K V   K    HPATR+FQA+RIF+N E+++L   L  ++  L   G L ++SFH
Sbjct: 184 ANIVSKVV--KKQKNKHPATRTFQAIRIFINQELKQLISVLEQSKDILSKNGRLSIISFH 241

Query: 252 SLEDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           S+EDR+VK+F    S +    +   +I +       + +  K +  ++ ++  N+R+RSA
Sbjct: 242 SIEDRIVKRFIQKNSRQKTLPKGLPIIENEIEKTYLKDL-GKYLT-SKAEIDNNKRARSA 299

Query: 310 KLRAGMRT 317
            LR   + 
Sbjct: 300 ILRVASKN 307


>gi|323356558|ref|YP_004222954.1| S-adenosylmethionine-dependent methyltransferase [Microbacterium
           testaceum StLB037]
 gi|323272929|dbj|BAJ73074.1| predicted S-adenosylmethionine-dependent methyltransferase
           [Microbacterium testaceum StLB037]
          Length = 317

 Score =  328 bits (842), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 113/311 (36%), Positives = 167/311 (53%), Gaps = 9/311 (2%)

Query: 20  HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           H PVLLE+   LL P    P  V +D T G GG+S +F +      +I LDRD  A+   
Sbjct: 7   HTPVLLERCAELLAPALERPDAVFVDGTLGMGGHSEAFLERFPTARLIGLDRDTDALRIA 66

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSG 131
            E +  + ++ +L    +  + + V   GVD   G++FDLGVSS+Q+D   RGF++ +  
Sbjct: 67  GERLARFGDRVTLVHTVYDGIAEAVASAGVDKVDGILFDLGVSSLQLDEASRGFAYAQDA 126

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + G++A++V+      DL RI    GEEK A R A AI+  R  AP + +  
Sbjct: 127 PLDMRMDQTQGVTAAEVLATYGEGDLRRIFERYGEEKLAGRYARAIIAARAEAPLERSGQ 186

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L  ++Q     +     HPA R FQALRI VN E+  L + + +A K L  GG ++V+S+
Sbjct: 187 LVDVLQAATPAAVLRERHPAKRVFQALRIEVNAELSVLERTIPAALKVLGVGGRIVVLSY 246

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
            SLEDRLVK+ FA  +         +    H   F+ + +   + + E+ A N R+   +
Sbjct: 247 QSLEDRLVKRVFAEAAASTAPRGLPVELPEHAPKFRLLVRGAELASDEERAANPRATPVR 306

Query: 311 LRAGMRTVERS 321
           LRA  RT E +
Sbjct: 307 LRAAERTKEDA 317


>gi|152967151|ref|YP_001362935.1| S-adenosyl-methyltransferase MraW [Kineococcus radiotolerans
           SRS30216]
 gi|263456185|sp|A6WCY2|RSMH_KINRD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|151361668|gb|ABS04671.1| S-adenosyl-methyltransferase MraW [Kineococcus radiotolerans
           SRS30216]
          Length = 391

 Score =  328 bits (842), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 109/326 (33%), Positives = 171/326 (52%), Gaps = 10/326 (3%)

Query: 1   MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM 57
           ++ ++ +      H     H  V+LE+   +L+PA   PG V +D T G GG++    + 
Sbjct: 9   VQGRAGEGAEERAHDAARRHASVMLERCTRVLSPALDHPGAVTVDVTLGMGGHAHELLRR 68

Query: 58  GS--NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLG 112
                ++ +DRDP A+      + ++ ++ +L  +    L + + D G   VD V FDLG
Sbjct: 69  HPGLRLVGMDRDPQALELAAHRLHEFADRITLVHSVSDGLGEALDDLGLDTVDAVFFDLG 128

Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCSGIS-ASDVVNQANVKDLTRILGILGEEKQASR 171
           VSS+Q+D  +RGFS+ +   LDMRM     + A+DV+N  +   LTRIL + GEE+ A R
Sbjct: 129 VSSLQLDEAERGFSYARDTALDMRMDPGAPTTAADVLNTYSHSQLTRILRVYGEERFAPR 188

Query: 172 IAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQ 230
           IA AIV+ R   PF ++  L  L++  V  + +    +PA R+FQALRI VN+E+  + +
Sbjct: 189 IASAIVRERALEPFTSSARLVDLVRANVPAATRRTGGNPAKRTFQALRIEVNDELGVVER 248

Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK 290
            L  A + L   G L V++FHSLEDR+VK      S                   + +T+
Sbjct: 249 SLPVAFERLAPEGRLAVLTFHSLEDRIVKNALRELSSSSAPPDLPFVPAGSGPRAELLTR 308

Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMR 316
                 + ++A N R+ SA+LRA  R
Sbjct: 309 GGETADEAELAENPRAASARLRAVRR 334


>gi|62260134|gb|AAX77882.1| unknown protein [synthetic construct]
          Length = 340

 Score =  328 bits (842), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 119/321 (37%), Positives = 181/321 (56%), Gaps = 16/321 (4%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVS 72
           H +  H  VLL++ I  LN  P  + +DATFG GG+S++         +IA D+D  A+S
Sbjct: 23  HMLEMHYSVLLQESINDLNINPQGIYIDATFGRGGHSKAILNRLTTGRLIAFDKDLDAIS 82

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             +E  +     F +  A+F+ + DY         +DG++ DLGVSS Q+D   RGFSF 
Sbjct: 83  YARENFQF--SNFEIVHASFASIYDYCLQHSLLGKIDGIIMDLGVSSPQLDNAARGFSFT 140

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQ 186
            +GPLDMRM  S GI+AS  + + +V DL+ I  + GEE+ A +IA  I    +Q+   +
Sbjct: 141 HNGPLDMRMDVSKGITASQALEELSVDDLSYIFKVYGEERFAKKIALRIKDYIQQNGSIR 200

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
            T +L+ LI  T+   K  + +PATR FQALRI+VNNE+++L   L +    +K+GG + 
Sbjct: 201 KTLELAELILATI--GKKEKKNPATRCFQALRIYVNNELKDLEALLENILAVIKSGGRIA 258

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRH---MIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            +SFHSLEDR+VK+ F++       +     M+P ++     + ITKK     ++++  N
Sbjct: 259 AISFHSLEDRIVKQKFSALINPKQELNRITKMLPQDSSQIKLKWITKKS-KANEDELNQN 317

Query: 304 RRSRSAKLRAGMRTVERSIED 324
            RSRSA LR   +     + D
Sbjct: 318 VRSRSAILRVVEKLYPYDVPD 338


>gi|291457557|ref|ZP_06596947.1| S-adenosyl-methyltransferase MraW [Bifidobacterium breve DSM 20213]
 gi|291380610|gb|EFE88128.1| S-adenosyl-methyltransferase MraW [Bifidobacterium breve DSM 20213]
          Length = 350

 Score =  328 bits (842), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 119/318 (37%), Positives = 167/318 (52%), Gaps = 14/318 (4%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           H PVLL+  + L+ PA    G V +D T G  G+S +F K      +I +DRD  A++  
Sbjct: 8   HQPVLLDDCVNLVAPALQHEGAVAVDCTLGLAGHSTAFLKAAPQARLIGIDRDSEALALA 67

Query: 75  QETM--RDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQK 129
            E M      ++F+   A F QL   + D+GV   D V  DLG+SS+QID  DRGFS+  
Sbjct: 68  TERMVQEGLSDRFTPVHAAFDQLDQVLADQGVERVDAVFMDLGLSSLQIDETDRGFSYSH 127

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM  S  ++A  ++   ++  L R+    GEE+ A +IA  IV RR   PF TT
Sbjct: 128 DAPLDMRMDVSQNLTAERILADYDMASLIRVFREYGEERFARQIAREIVSRRTQTPFTTT 187

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L++L++  V  +     +PA R FQALRI VN E+++L+  L  A   L+ GG L+V 
Sbjct: 188 GQLNALVEDVVPKAHRPAGNPAKRVFQALRIEVNGELDKLSSILPQAANRLQVGGRLVVE 247

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           S+HSLED+ VK F A            I  +     F+ +T+  +    E+   N RS S
Sbjct: 248 SYHSLEDKTVKSFMAQGLKIDAPANLPIVPDDAQPFFRELTRGAIKADDEERQRNPRSAS 307

Query: 309 AKLRAGM---RTVERSIE 323
            +LRA     R  ER  E
Sbjct: 308 VRLRAVELSRRIPERWRE 325


>gi|307294504|ref|ZP_07574346.1| S-adenosyl-methyltransferase MraW [Sphingobium chlorophenolicum
           L-1]
 gi|306878978|gb|EFN10196.1| S-adenosyl-methyltransferase MraW [Sphingobium chlorophenolicum
           L-1]
          Length = 321

 Score =  328 bits (842), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 135/318 (42%), Positives = 199/318 (62%), Gaps = 11/318 (3%)

Query: 9   MSSAIH--HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDR 66
           MS+++        H+PVL+E+V+  L+  PG+  +D TFGAGGYS +    G+ V A DR
Sbjct: 1   MSASVDPAKDPDRHIPVLIEEVLHALSINPGEAHVDGTFGAGGYSSAMAAKGAKVFAFDR 60

Query: 67  DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDR 123
           DP A+  GQ    +     +L    FS+++  + ++GV    GV  D+GVSSMQ+D  +R
Sbjct: 61  DPDAIREGQALADEKG--ITLIAGEFSRMEALLAERGVTSVAGVTLDIGVSSMQLDRPER 118

Query: 124 GFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           GFSFQ  GPLDM MS SG++A+D +N A  +++  IL   GEE ++ R+A AIV+ R   
Sbjct: 119 GFSFQGDGPLDMTMSQSGMNAADFLNNAPEEEIANILYRYGEEPRSRRVAKAIVEAR--- 175

Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
           P + T  L+++++K +    +++  PATR+FQA+RI VN E+EEL +GL +AE  L+ GG
Sbjct: 176 PLERTGQLANIVRKALGHKPHDKKDPATRTFQAIRIHVNRELEELERGLEAAEAILEEGG 235

Query: 244 LLIVVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
            L +V+FHSLEDR+VK+F  +RS G+    RHM    A PA   +   K V P + ++A 
Sbjct: 236 RLAIVTFHSLEDRIVKQFLRNRSGGEAGGSRHMPQKQAGPAPTFAKPAKAVRPGEAELAR 295

Query: 303 NRRSRSAKLRAGMRTVER 320
           N R+RSA LR+ +RT   
Sbjct: 296 NPRARSATLRSAIRTAAP 313


>gi|76779305|gb|AAI06187.1| Methyltransferase 5 domain containing 1 [Mus musculus]
          Length = 406

 Score =  328 bits (842), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 136/352 (38%), Positives = 189/352 (53%), Gaps = 44/352 (12%)

Query: 2   ESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV 61
           E K  + M+         H+PV++++V+  L P  G+V LD TFG+GG++R+  +   +V
Sbjct: 61  EEKELEAMAKL-------HIPVMVDQVVHCLAPQKGQVFLDMTFGSGGHTRAILQKEPDV 113

Query: 62  --IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVS 114
              ALDRDP A +  ++  R Y  Q       FSQ +  +   GV     DG++ DLG  
Sbjct: 114 MVYALDRDPVAYAIAEQLSRLYPTQIQALLGQFSQAEALLMKAGVQPGTIDGILMDLGCP 173

Query: 115 SMQIDCGDRGFSFQKSGPLDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQAS 170
           SMQ+D  +RGFS +K GPLDMRM         +ASDVVN  + + L  IL   GEEK A 
Sbjct: 174 SMQLDAPERGFSLRKDGPLDMRMDGDRYPDTPTASDVVNALDQQALASILRAYGEEKHAK 233

Query: 171 RIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSK--------NNRIHPATRSFQALRIFVN 222
           +IA AI++ R + P   TQ L+S++      S             H AT++FQALRIFVN
Sbjct: 234 KIASAIIQARSTYPISRTQQLASIVAGAFPPSAVYARKDLLQRSTHIATKTFQALRIFVN 293

Query: 223 NEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKF-------------FASRSGKV 269
           NE+ EL  GLR+AEK LK GG L+ +SFHSLEDR+VK+F                +  + 
Sbjct: 294 NELNELYAGLRTAEKFLKTGGRLVALSFHSLEDRIVKRFLLGISMTERFNLSIRQKVKQT 353

Query: 270 MAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
             +     +        P  ++ I KKV+ P  +DV  N R RSAKLRA ++
Sbjct: 354 SQLDSDQETEERHSVRAPLKWELIHKKVLTPEDQDVQDNPRGRSAKLRAAIK 405


>gi|187930165|ref|YP_001900652.1| S-adenosyl-methyltransferase MraW [Ralstonia pickettii 12J]
 gi|262825235|sp|B2UCY5|RSMH_RALPJ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|187727055|gb|ACD28220.1| S-adenosyl-methyltransferase MraW [Ralstonia pickettii 12J]
          Length = 319

 Score =  328 bits (842), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 113/323 (34%), Positives = 179/323 (55%), Gaps = 23/323 (7%)

Query: 11  SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRD 67
           +    T   H  VLL++ +  L      + +D TFG GG+SR   +    G  ++A D+D
Sbjct: 2   TTQTSTGLRHQTVLLDEAVDALIWRDDGIYIDGTFGRGGHSRRILERLGPGGRLVAFDKD 61

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRG 124
           P A++           +F++   +F+Q+   +  +GV+   GV+ DLG+SS QID G RG
Sbjct: 62  PAAITEAG---TVEDARFAIEHDSFAQMARCLDARGVEQVAGVLLDLGISSPQIDEGARG 118

Query: 125 FSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR--- 180
           FSF+  GPLDMRM  + GI+A+  + +A+ +D+ R++   GEE+ A +IA AIV RR   
Sbjct: 119 FSFRMDGPLDMRMDTTRGITAAQWLAEADERDIARVIRDYGEERFAVQIAKAIVARRGQS 178

Query: 181 -QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
               P   T +L++L+ + V   +     PATR+FQALRI VN E+ +L  GL++A   L
Sbjct: 179 GDRGPLDRTSELAALVAQAVKT-REKGQDPATRTFQALRIHVNQELADLETGLKAAFDRL 237

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPS------NAHPAVFQSITKKVV 293
           + GG L+V+SFHSLEDR+VK+F  + +    +    +               + + +  V
Sbjct: 238 EQGGRLVVISFHSLEDRIVKRFMQALARPEQSAAPELRRAPLRAHELPAPQLRLLGR--V 295

Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316
            P++ +V+ N R+RSA +R   R
Sbjct: 296 KPSEAEVSANPRARSAIMRVAER 318


>gi|224419084|ref|ZP_03657090.1| S-adenosyl-methyltransferase MraW [Helicobacter canadensis MIT
           98-5491]
 gi|253828022|ref|ZP_04870907.1| S-adenosyl-methyltransferase [Helicobacter canadensis MIT 98-5491]
 gi|313142594|ref|ZP_07804787.1| S-adenosyl-methyltransferase MraW [Helicobacter canadensis MIT
           98-5491]
 gi|253511428|gb|EES90087.1| S-adenosyl-methyltransferase [Helicobacter canadensis MIT 98-5491]
 gi|313131625|gb|EFR49242.1| S-adenosyl-methyltransferase MraW [Helicobacter canadensis MIT
           98-5491]
          Length = 311

 Score =  328 bits (842), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 98/309 (31%), Positives = 165/309 (53%), Gaps = 16/309 (5%)

Query: 19  DHVPVLLEKVIALLNP----APGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVS 72
            H+ VL ++V+   N       G +++D T G GG+S +  +    +  I +D+D  A++
Sbjct: 4   PHISVLKQEVLEAFNTEIINQKGGILIDCTLGFGGHSLALLEKYPKLKVIGIDQDDEAIA 63

Query: 73  CGQETMRDYKEQFSLFQATFSQ-LQDYV-PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
             ++ +  + ++FS+    FS  L+  +  +  + G++ D+GVSSMQ D  +RGF F   
Sbjct: 64  LAKKRLEPFCDRFSIEYGCFSGVLKQILQRENNIVGILADIGVSSMQFDSKERGFCFDSE 123

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM  S   +A D+VN   + +L RI    GE ++  ++A+ IV+ R+     + +
Sbjct: 124 -FLDMRMDQSQNFTAKDIVNSYPLTELERIFRDFGEIREYKKLAYCIVELRKKEKITSAK 182

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA-EKALKAGGLLIVV 248
            LS  I K     K+ +IHPAT +FQALRI VNNE+ EL   L+    + ++    L ++
Sbjct: 183 MLSQFIAKHF---KHPKIHPATLAFQALRIEVNNELGELESMLKIFDSQTMQDCSRLCLI 239

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           SFHSLEDR++K  F       +            +    +S+ KK ++P +E++  N R+
Sbjct: 240 SFHSLEDRIIKNKFKQWENPCICPPQALKCECGRNHQKGRSLYKKPIIPKEEEIKDNPRA 299

Query: 307 RSAKLRAGM 315
           RS+K+R   
Sbjct: 300 RSSKMRVFE 308


>gi|296140350|ref|YP_003647593.1| S-adenosyl-methyltransferase MraW [Tsukamurella paurometabola DSM
           20162]
 gi|296028484|gb|ADG79254.1| S-adenosyl-methyltransferase MraW [Tsukamurella paurometabola DSM
           20162]
          Length = 331

 Score =  328 bits (841), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 111/309 (35%), Positives = 165/309 (53%), Gaps = 10/309 (3%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           HVPVL  +V  LL PA    G + +DAT GAGG+S           VI LDRD  A    
Sbjct: 10  HVPVLATRVRELLAPALAHDGAIYVDATLGAGGHSELILDTFPNARVIGLDRDTDAHDIA 69

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
              +  +  +F+     +  +   + D G   VD ++FDLGVSSMQ+D  +RGF++    
Sbjct: 70  GARLARFGGRFTAVHTRYDAIAAALDDLGIETVDAILFDLGVSSMQLDRAERGFAYSVDA 129

Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+    ++A+DV+N  +  DL RIL   G+E+ A +IA A++K R+  PF T+  
Sbjct: 130 PLDMRMNADDPLTAADVLNTYSHGDLARILQRYGDERFAGKIASAVLKEREREPFTTSGR 189

Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  L+  T+   ++    HPA R+FQALRI VN E+  L   +  A   L   G ++ +S
Sbjct: 190 LVELLYATIPAPARRTGGHPAKRTFQALRIEVNAELASLESAVPQALDVLAPEGRIVFLS 249

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           + SLEDR+VK   A+R+         +      A F+ +T+     T E++A N+R+   
Sbjct: 250 YQSLEDRIVKAELAARTRSTTPAGLPMDLPGTGATFELLTRGAERATDEEIAENQRAAPV 309

Query: 310 KLRAGMRTV 318
           ++RA  R  
Sbjct: 310 RMRAARRLA 318


>gi|309783013|ref|ZP_07677732.1| S-adenosyl-methyltransferase MraW [Ralstonia sp. 5_7_47FAA]
 gi|308918121|gb|EFP63799.1| S-adenosyl-methyltransferase MraW [Ralstonia sp. 5_7_47FAA]
          Length = 319

 Score =  328 bits (841), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 117/323 (36%), Positives = 180/323 (55%), Gaps = 23/323 (7%)

Query: 11  SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRD 67
           +    T   H  VLLE+ +  L      + +D TFG GG+SR   +    G  ++A D+D
Sbjct: 2   TTQASTALRHQTVLLEEAVDALIWRDDGIYIDGTFGRGGHSRRILERLGPGGRLVAFDKD 61

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRG 124
           P A++           +F++   +F+Q+   +  +G   V GV+ DLG+SS QID G RG
Sbjct: 62  PAAITEAG---TVEDARFAIEHDSFAQMAQCLDARGIERVAGVLLDLGISSPQIDEGARG 118

Query: 125 FSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR--- 180
           FSF+  GPLDMRM  + GI+A+  + +A+ +D+ R++   GEE+ A +IA AIV RR   
Sbjct: 119 FSFRMDGPLDMRMDTTRGITAAQWLAEADERDIARVIRDYGEERFAVQIAKAIVARRGQS 178

Query: 181 -QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
               P   T +L++L+ + V   +     PATR+FQALRI VN E+ +L  GL++A + L
Sbjct: 179 GDRGPLDRTSELAALVAQAVKT-REKGQDPATRTFQALRIHVNQELADLETGLKAAFERL 237

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRS---GKVMAVRHMIPSNAHP---AVFQSITKKVV 293
           + GG L+V+SFHSLEDR+VK+F  + +             P  AH       + + +  V
Sbjct: 238 EQGGRLVVISFHSLEDRIVKRFMQALARPEQSAAPELRRAPLRAHELPTPQLRLLGR--V 295

Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316
            P++ +V+ N R+RSA +R   R
Sbjct: 296 KPSEAEVSANPRARSAIMRVAER 318


>gi|148377639|ref|YP_001256515.1| S-adenosyl-methyltransferase [Mycoplasma agalactiae PG2]
 gi|263456537|sp|A5IYG2|RSMH_MYCAP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|148291685|emb|CAL59071.1| S adenosyl methyltransferase [Mycoplasma agalactiae PG2]
          Length = 300

 Score =  328 bits (841), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 102/307 (33%), Positives = 155/307 (50%), Gaps = 15/307 (4%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQ 75
             H+P+LL + I  LN     + LD T G GG+S    K   N  ++  D+D FA+   +
Sbjct: 3   NKHIPILLNEAIKSLNIKSDGIYLDLTVGMGGHSSEILKRLKNGLLVGFDKDLFAIEESR 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + +      F L  + F+ + D +       VDG++ DLG+SS Q+D  +RGFS+ K   
Sbjct: 63  KRLSKIGSNFQLIHSDFNNVADELAKLNINAVDGILVDLGISSPQVDNAERGFSYSKDAR 122

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+ +  + A  VVN  +  +L  I     E K A ++A+AI+K R   P  TT +L
Sbjct: 123 LDMRMNTNQALDAHFVVNTYSEDELITIFYNYAEVKLAKQVANAIIKNR---PINTTLEL 179

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + +I+        +  +P    FQA+RI VNNE   +   L  A   LK    L +++FH
Sbjct: 180 AEVIKSAYPAKLLSLKNPCKAVFQAIRIEVNNEFSSINSMLVQALNLLKKDSSLAIITFH 239

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLED ++KKFF +        +  I       V      KV  P++ +++ N RSRSAKL
Sbjct: 240 SLEDSIIKKFFGNLIKSKHPSKMPIKEEKKYIV------KVYSPSKAEISENNRSRSAKL 293

Query: 312 RAGMRTV 318
           R   + +
Sbjct: 294 RVLTKLI 300


>gi|88801293|ref|ZP_01116821.1| S-adenosyl-methyltransferase MraW [Polaribacter irgensii 23-P]
 gi|88781951|gb|EAR13128.1| S-adenosyl-methyltransferase MraW [Polaribacter irgensii 23-P]
          Length = 299

 Score =  328 bits (841), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 104/303 (34%), Positives = 155/303 (51%), Gaps = 17/303 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H PVLL++ +  L      + +D TFG GG+S+           +   D+DP A+    E
Sbjct: 4   HSPVLLKESVDALAIKENGIYVDVTFGGGGHSKEILSRLGDSGRLFGFDQDPDALENIIE 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +F+L    F  +  ++   GV   DG++ DLGVSS Q D  DRGFS +  G L
Sbjct: 64  -----DARFTLIPENFRYISRFLRFHGVKKVDGILADLGVSSHQFDEADRGFSTRFDGDL 118

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  S +SA +V+   + + L  IL + GE + +  IA  IV++RQ    +T+  L 
Sbjct: 119 DMRMNQKSKVSAKEVIGTYSEEKLAEILFLYGELRNSRNIAKTIVEKRQEEKIETSFQLK 178

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
             +QK +  +  ++I    + FQA+RI VN E+E L + L      LK  G L V+S+HS
Sbjct: 179 EALQKYLPNAVEHKI--LAQIFQAVRIEVNEELEVLKEFLLQTPNLLKEKGRLSVISYHS 236

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDRLVK+F  +        +    +   P        K++VP  ++V  N R+RSAKLR
Sbjct: 237 LEDRLVKRFIRTGLFIGEPEKDFFGNIEVPMQK---VGKLIVPDAKEVKVNNRARSAKLR 293

Query: 313 AGM 315
              
Sbjct: 294 IAT 296


>gi|330826599|ref|YP_004389902.1| ribosomal RNA small subunit methyltransferase H [Alicycliphilus
           denitrificans K601]
 gi|329311971|gb|AEB86386.1| Ribosomal RNA small subunit methyltransferase H [Alicycliphilus
           denitrificans K601]
          Length = 308

 Score =  328 bits (841), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 117/310 (37%), Positives = 170/310 (54%), Gaps = 16/310 (5%)

Query: 20  HVPVLLEKVIALL---NPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSC 73
           H  VL  + +  L     AP    +D TFG GG++R   +       ++A D+DP A+  
Sbjct: 7   HTTVLASEAVDALLGGAAAPVGTFVDGTFGRGGHARLILQRLGAQGRLVAFDKDPEAIH- 65

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             E  R +  +FS+    FS L + +P   V GV+ DLG+SS QID   RGFSF+  GPL
Sbjct: 66  --EAARIHDARFSIQHQGFSHLGE-LPAASVAGVLLDLGISSPQIDDPARGFSFRFDGPL 122

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR-QSAPFQTTQDL 191
           DMRM  + G S ++ +  A    +  ++   GEE+ A  IA AIV RR Q  P   T +L
Sbjct: 123 DMRMDTTRGQSVAEWLAGAEAAQIAEVIRDYGEERFAGPIAKAIVARRTQGGPIVGTAEL 182

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++   V   +  + +PATR+FQA RIF+N E+EEL Q L ++   L  GG L+V+SFH
Sbjct: 183 ADIVAGAVKTREPGQ-NPATRTFQAFRIFINAELEELQQALEASLTVLAPGGRLVVISFH 241

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+VK+F A  S + M  R    +   P   +++ +  V P+  +V  N R+RSA +
Sbjct: 242 SLEDRIVKQFIARHSKE-MFDRRAPFAAPTPMRLKALGR--VKPSAAEVVANPRARSAVM 298

Query: 312 RAGMRTVERS 321
           R   RT   +
Sbjct: 299 RVAERTEVPA 308


>gi|291519055|emb|CBK74276.1| S-adenosyl-methyltransferase MraW [Butyrivibrio fibrisolvens 16/4]
          Length = 289

 Score =  328 bits (841), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 88/283 (31%), Positives = 145/283 (51%), Gaps = 9/283 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76
           +H  VLL + +  LN  P  + +D T G GG+S          ++   D+D  A+    E
Sbjct: 4   NHYSVLLYETVDNLNIKPDGIYVDGTLGGGGHSFEIASRLTTGHLYGFDQDTDALKAAGE 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQ-KSGP 132
            +  Y ++ +   + +  +++ + + GV   DG++ DLGVSS Q+D  DRGF+++    P
Sbjct: 64  RLACYGDKVTRIHSNYEFMKERLAELGVTKVDGIMLDLGVSSFQLDEADRGFTYRVDDAP 123

Query: 133 LDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM      +A+D+VN  + +DLTR+L   GEEK + +I   I+K R+ AP  T   L
Sbjct: 124 LDMRMDKDNPMTAADIVNTYSAEDLTRVLFTYGEEKFSKQIVKNIIKEREKAPILTAGQL 183

Query: 192 SSLIQKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           + +I +++       + HP+ R++QALRI +N E+  L   +      L  GG L +++F
Sbjct: 184 NKIIAESIPKKAQVGQGHPSKRTYQALRIELNRELTVLEDHIDDMIDLLNPGGRLCIITF 243

Query: 251 HSLEDRLVKKFFASRSGKVMAVR-HMIPSNAHPAVFQSITKKV 292
           HSLEDR+ K  F          +   +         +S  +K 
Sbjct: 244 HSLEDRITKVAFKRNEDPCTCPKNFPVCVCGKKIKGKSGYEKA 286


>gi|239813918|ref|YP_002942828.1| S-adenosyl-methyltransferase MraW [Variovorax paradoxus S110]
 gi|263504487|sp|C5CNE6|RSMH_VARPS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|239800495|gb|ACS17562.1| S-adenosyl-methyltransferase MraW [Variovorax paradoxus S110]
          Length = 307

 Score =  328 bits (841), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 127/313 (40%), Positives = 175/313 (55%), Gaps = 16/313 (5%)

Query: 15  HTIGDHVPVLLEKVIALL---NPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDP 68
           +T   H  VLL + +  L   + A     +DATFG GG++R+          +IA D+D 
Sbjct: 2   NTPWTHTTVLLNEAVEALLSGSTAATGTYVDATFGRGGHARAILARLAPEGRLIAFDKDA 61

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
            AV+   E  R    +FS+    F  L + +PD  V GV+ DLGVSS QID   RGFSF+
Sbjct: 62  EAVA---EAARISDARFSIRHQGFRSLGE-LPDASVAGVLMDLGVSSPQIDNPVRGFSFR 117

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA-PFQ 186
             GPLDMRM  + G S +D +  A ++ +  ++   GEE+ A +IA AIV RRQ      
Sbjct: 118 FDGPLDMRMDTTRGESVADWLATAELQQIAEVIRDYGEERFAVQIAKAIVARRQERGAIS 177

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           TT +L+ L+  TV   +  + +PATR+FQA RIF+N E+EEL Q L ++   L+ GG L 
Sbjct: 178 TTSELAELVAGTVKTREPGQ-NPATRTFQAFRIFINAELEELQQALEASLSVLQPGGRLA 236

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+SFHSLEDR+VK+F A  S +V   R      A P   +    + + P+  +V  N RS
Sbjct: 237 VISFHSLEDRIVKQFIARHSKEVYDRRAPF---AAPKAMKLRALERIKPSDAEVHGNPRS 293

Query: 307 RSAKLRAGMRTVE 319
           RSA LR   RT E
Sbjct: 294 RSAILRVAERTQE 306


>gi|296217807|ref|XP_002755199.1| PREDICTED: putative S-adenosyl-L-methionine-dependent
           methyltransferase METT5D1 [Callithrix jacchus]
          Length = 406

 Score =  328 bits (841), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 131/352 (37%), Positives = 189/352 (53%), Gaps = 44/352 (12%)

Query: 2   ESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN- 60
           + ++ +TM       +  H+PV++++V+  L+P  G++ LD TFG+GG++++  +  S+ 
Sbjct: 61  QDRNFETM-------VKLHIPVMVDEVVHCLSPQKGQIFLDMTFGSGGHTKAILQKESDI 113

Query: 61  -VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVS 114
            + ALDRDP A +  +     Y +Q       FSQ +  +    V     DGV+ DLG S
Sbjct: 114 VLYALDRDPTAYALAEHLSELYPKQIRAMLGRFSQAETLLMKAEVQPGTFDGVLMDLGCS 173

Query: 115 SMQIDCGDRGFSFQKSGPLDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQAS 170
           SMQ+D  +RGFS +K GPLDMRM         +A+DVVN  + + L  IL   GEEK A 
Sbjct: 174 SMQLDTSERGFSLRKDGPLDMRMDGDRYPDMPTAADVVNALDQQALASILRAYGEEKHAK 233

Query: 171 RIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSK--------NNRIHPATRSFQALRIFVN 222
           +IA AIV+ R   P   TQ L+S+I      S             H AT++FQALRIFVN
Sbjct: 234 KIASAIVQARSIYPITRTQQLASIIAGAFPPSAIYARKDLLQRSTHIATKTFQALRIFVN 293

Query: 223 NEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKF------------------FAS 264
           NE+ EL  GL++A+K L+ GG L+ +SFHSLEDR+VK+F                    +
Sbjct: 294 NELNELHTGLKTAQKFLRPGGRLVALSFHSLEDRIVKRFLLGISMTERFNLSVRQQVMKA 353

Query: 265 RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
                      +     P +++ I KKV+ P   DV  N R RSAKLRA ++
Sbjct: 354 SRLDSDHENVEVSMRRAPLMWELIHKKVLSPQSRDVQDNPRGRSAKLRAAIK 405


>gi|119026127|ref|YP_909972.1| S-adenosyl-methyltransferase MraW [Bifidobacterium adolescentis
           ATCC 15703]
 gi|263445943|sp|A1A2F7|RSMH_BIFAA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|118765711|dbj|BAF39890.1| S-adenosyl-methyltransferase [Bifidobacterium adolescentis ATCC
           15703]
          Length = 343

 Score =  328 bits (841), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 108/307 (35%), Positives = 159/307 (51%), Gaps = 11/307 (3%)

Query: 20  HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           H PVLL   + L+ P    PG + +D T G  G+S +F K      +I +DRD  A++  
Sbjct: 8   HQPVLLRDCVDLVAPALAKPGSIAVDCTLGLAGHSTAFLKASPNARLIGIDRDTEALALA 67

Query: 75  QETMR--DYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQK 129
            + M      ++F+   A F      + D+GVD    V  DLG+SS+QID  +RGFS+  
Sbjct: 68  TKRMEMEGLADRFTPVHAAFDDFSQVLSDQGVDKVNAVFMDLGLSSLQIDETERGFSYSH 127

Query: 130 SGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM     ++A  V+ + +  DL RI    GEE+ + +IA  IV+RR++ P  T+
Sbjct: 128 DAPLDMRMDVTQPLTAEQVLAEYSFADLVRIFRAYGEERFSKQIAREIVRRRETEPLTTS 187

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ L+ + V  +     +PA R FQALRI VN E+++LA  L      L  GG L+V 
Sbjct: 188 GQLNRLVDEVVPQAHRPAGNPAKRVFQALRIEVNGELDKLAGTLPQIANHLAVGGRLVVE 247

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           S+HSLED+ VK F              +        F+ +T+  +    E++A N RS S
Sbjct: 248 SYHSLEDKTVKAFMNQGLKVDAPADMPVVPPDMMPFFKELTRGAIKADAEEIANNPRSAS 307

Query: 309 AKLRAGM 315
            +LRA  
Sbjct: 308 VRLRAVE 314


>gi|332663143|ref|YP_004445931.1| ribosomal RNA small subunit methyltransferase H [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332331957|gb|AEE49058.1| Ribosomal RNA small subunit methyltransferase H [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 298

 Score =  327 bits (840), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 103/305 (33%), Positives = 163/305 (53%), Gaps = 17/305 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H PVL  + I  LN   G   +DATFG GG++R   +     + +I  D+D  A     +
Sbjct: 4   HNPVLASEAIEALNIQAGGTYVDATFGGGGHARLILQALDENARLIGFDQDEDAQRNALD 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +F+     F  L+ ++       VDG++ DLGVSS Q++  +RGFSF+    L
Sbjct: 64  -----DPRFTFVPHNFRFLRRFLRLHDAVEVDGILADLGVSSHQLNEAERGFSFRFDTQL 118

Query: 134 DMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  G  SA+DV+      +L  + G LGE + +  +A AIV+ RQ  P ++  DL 
Sbjct: 119 DMRMNQQGERSAADVLATYTEAELQNMFGTLGEVRNSRTLAQAIVRERQVRPMRSISDLL 178

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +++   V   +N       + FQALR+ VN+E+  L   L  + + LK GG L+++++HS
Sbjct: 179 AVLDPLVRGQRNR---YLAQVFQALRMEVNDEVGALQDFLEQSLQVLKPGGRLVIIAYHS 235

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           +EDR+VK F    +GKV               F+ IT+K ++P++ ++  N RSRSAK+R
Sbjct: 236 IEDRMVKNFIK--TGKVDGEMEQDFYGNITRPFEVITRKAMLPSEIEIKANPRSRSAKMR 293

Query: 313 AGMRT 317
             ++ 
Sbjct: 294 VAVKI 298


>gi|42526707|ref|NP_971805.1| S-adenosyl-methyltransferase MraW [Treponema denticola ATCC 35405]
 gi|85701364|sp|P62477|RSMH_TREDE RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|41817022|gb|AAS11716.1| S-adenosyl-methyltransferase MraW [Treponema denticola ATCC 35405]
          Length = 315

 Score =  327 bits (840), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 102/306 (33%), Positives = 162/306 (52%), Gaps = 8/306 (2%)

Query: 20  HVPVLLEKVIALLNP-APGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76
           H  VLLE+ +  L P A   + +D T G GG++ +F K    +  I +D D       +E
Sbjct: 5   HTSVLLEECLEFLKPDASDNLFVDGTLGEGGHTEAFLKRYPQLNAIGVDADVSIQERAKE 64

Query: 77  TMRDYKEQFSLFQATFSQL-QDYVPDKGV-DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
            ++ + E+         +  ++Y  D    + ++ DLG+S        RGFSF    PLD
Sbjct: 65  RLKPFGERIRFHLGWSDEFFKNYPKDFAPPNLILLDLGISMFHYVKSGRGFSFSSDEPLD 124

Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MR++    +SA+D+VN  N KDL  ++   GEE+ + +IA  IV++R +A F   ++L+ 
Sbjct: 125 MRLNPELRLSAADIVNSYNEKDLADLIFNYGEERYSRKIASRIVEQRAAAAFSNAKELAD 184

Query: 194 LIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            I K V  + ++ +IHPAT++FQALRI VN E++ L + L +A   L   G L +++FHS
Sbjct: 185 CIYKAVPQNYRHGKIHPATKTFQALRIAVNGELDRLPRLLEAAFSVLAPNGRLGLITFHS 244

Query: 253 LEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK +F           +  I         + +TKK V  + E++  N  SRSA+L
Sbjct: 245 LEDRIVKFYFKELGKSCTCPENMPICKCGGRPRAEVLTKKAVKASDEEIRLNPPSRSARL 304

Query: 312 RAGMRT 317
           R   + 
Sbjct: 305 RVVRKI 310


>gi|291320327|ref|YP_003515589.1| S adenosyl methyltransferase [Mycoplasma agalactiae]
 gi|290752660|emb|CBH40633.1| S adenosyl methyltransferase [Mycoplasma agalactiae]
          Length = 300

 Score =  327 bits (840), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 102/307 (33%), Positives = 156/307 (50%), Gaps = 15/307 (4%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQ 75
             H+P+LL + I  LN     + LD T G GG+S    K   N  ++  D+D FA+   +
Sbjct: 3   NKHIPILLNEAIESLNIKSNGIYLDLTVGMGGHSSEILKRLKNGLLVGFDKDLFAIEESR 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + +      F L  + F+ + D +       VDG++ DLG+SS Q+D  +RGFS+ K   
Sbjct: 63  KRLSKIGSNFQLIHSDFNNVADELAKLNISAVDGILVDLGISSPQVDNAERGFSYSKDAR 122

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+ +  + A  VVN  +  +L  I     E K A ++A+AI+K+R   P  TT +L
Sbjct: 123 LDMRMNTNQALDAHFVVNNYSEDELITIFYNYAEVKLAKQVANAIIKKR---PINTTLEL 179

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + +I+        +  +P    FQA+RI VNNE   +   L  A   LK    L +++FH
Sbjct: 180 AEVIKSAYPAKLLSLKNPCKAVFQAIRIEVNNEFSSINSMLVQALNLLKKDSSLAIITFH 239

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLED ++KKFF +        +  I       V      KV  P++ +++ N RSRSAKL
Sbjct: 240 SLEDSIIKKFFGNLIKSKHPSKMPINEEKKYIV------KVYSPSKAEISENNRSRSAKL 293

Query: 312 RAGMRTV 318
           R   + +
Sbjct: 294 RVLTKLI 300


>gi|269127144|ref|YP_003300514.1| S-adenosyl-methyltransferase MraW [Thermomonospora curvata DSM
           43183]
 gi|268312102|gb|ACY98476.1| S-adenosyl-methyltransferase MraW [Thermomonospora curvata DSM
           43183]
          Length = 337

 Score =  327 bits (840), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 104/310 (33%), Positives = 171/310 (55%), Gaps = 14/310 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPA-------PGKVILDATFGAGGYSRSFCKMGSNV 61
           M  +       H+PVLL++V++LL PA          + +DAT G GG++ +  +    +
Sbjct: 1   MQDSACAAQAGHIPVLLDRVLSLLAPAVESAPAGRDPLYVDATLGMGGHAEAMLQAHPRL 60

Query: 62  --IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSM 116
             I LDRDP A+      +  + ++  L  A + +L   + + G    + ++FDLGVSS 
Sbjct: 61  RLIGLDRDPSAIERAGRRLARFADRVRLVHAVYDELPRVLAELGEPHAEAILFDLGVSSP 120

Query: 117 QIDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175
           Q+D  +RGF++    PLDMRM  +  ++A+DVVN    ++L RIL   GEE+ A RIA A
Sbjct: 121 QLDEAERGFAYSYDAPLDMRMDPTQPLTAADVVNGYPPEELARILREYGEERHARRIAAA 180

Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234
           I + R+ AP ++T  L+ L+++ +   ++ +  +PA R+FQALRI VN E+    + L +
Sbjct: 181 IERERRRAPLRSTGRLAELVRQAIPAPARRSGGNPAKRTFQALRIEVNGELAIWERALPA 240

Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVV 294
           A +AL  GG + V+S+HSLEDR+ K+   + S         +    H   F+ +T+    
Sbjct: 241 ALQALPVGGRVAVLSYHSLEDRITKRVLTACSTDTTPPGLPVSLPEHRPTFRLLTRGAET 300

Query: 295 PTQEDVAFNR 304
           P +E++  N 
Sbjct: 301 PGEEEITANP 310


>gi|296166032|ref|ZP_06848481.1| S-adenosyl-methyltransferase MraW [Mycobacterium parascrofulaceum
           ATCC BAA-614]
 gi|295898597|gb|EFG78154.1| S-adenosyl-methyltransferase MraW [Mycobacterium parascrofulaceum
           ATCC BAA-614]
          Length = 334

 Score =  327 bits (840), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 120/333 (36%), Positives = 183/333 (54%), Gaps = 18/333 (5%)

Query: 12  AIHHTIGDHVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKMGS--NV 61
           A   +   HVPVLL + + LL PA         G V+LDAT GAGG++  F        +
Sbjct: 2   ANDSSAFGHVPVLLGRCVELLTPALTRHDADGSGAVLLDATLGAGGHAERFLTDLPGLRL 61

Query: 62  IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSS 115
           I LDRDP A+   +  +  + ++ +L    +  L   + + G      VDG++FDLGVSS
Sbjct: 62  IGLDRDPNALEITRARLARFADRITLVHTRYDGLAAALAESGYGAIESVDGMLFDLGVSS 121

Query: 116 MQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAH 174
           MQ+D  +RGF++ +  PLDMRM   S ++A+D++N  +   L  IL   GEE+ A RIA 
Sbjct: 122 MQLDRAERGFAYAQDAPLDMRMDPESPLTAADILNTYDEAALADILHRYGEERFARRIAA 181

Query: 175 AIVKRRQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLR 233
            +V+RR  APF +T DL +L+ + +   ++    HPA R+FQALRI VN+E+  L     
Sbjct: 182 QVVRRRARAPFASTADLVALLYQAIPAPARRTGGHPAKRTFQALRIAVNDELNSLRAATP 241

Query: 234 SAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV 293
           +   AL  GG ++V+++ SLEDR+VK+ FA+       V   +    H   F+S+T    
Sbjct: 242 AGLDALAVGGRMVVLAYQSLEDRIVKRLFAAAVASRTPVDLPVELPGHEPRFRSLTHGAE 301

Query: 294 VPTQEDVAFNRRSRSAKLRAGMRTVERSIEDDS 326
               ++V  N RS + +LRA  R  + + + D+
Sbjct: 302 RADADEVERNPRSAAVRLRAVQRVQQSTGKADA 334


>gi|38234181|ref|NP_939948.1| S-adenosyl-methyltransferase MraW [Corynebacterium diphtheriae NCTC
           13129]
 gi|42559424|sp|P60395|RSMH_CORDI RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|38200443|emb|CAE50131.1| Conserved hypothetical protein [Corynebacterium diphtheriae]
          Length = 339

 Score =  327 bits (840), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 108/319 (33%), Positives = 172/319 (53%), Gaps = 23/319 (7%)

Query: 20  HVPVLLEKVIALLNPA-----PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVS 72
           HVPVL  ++  L+ P         VI+D T GAGG+S+ F +      VI LDRD  +++
Sbjct: 19  HVPVLRARMAELIAPKVTAMGSDAVIIDGTLGAGGHSKYFLESFPEARVIGLDRDTNSLA 78

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD--------------KGVDGVVFDLGVSSMQI 118
             +E ++++ ++F      F +    + +              +G+ G +FDLGVSSMQ+
Sbjct: 79  SARERLKEFGDRFLGIHTRFDRFAPKLEELAQSGNPIAATALEQGISGALFDLGVSSMQL 138

Query: 119 DCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177
           D  +RGF+++   PLDMRM  + GI+A+DV+N  +  +L RIL   G+E+ A +IA AIV
Sbjct: 139 DQAERGFAYRVDAPLDMRMDNTIGITAADVLNTYSHGELARILKTYGDERFAGKIASAIV 198

Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236
           + R+  PF T+  L  L+  T+  + +    HPA R+FQALRI VN E+E L   L    
Sbjct: 199 REREKEPFDTSARLVELLYATIPAATRRTGGHPAKRTFQALRIEVNRELESLENVLPEIT 258

Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296
           + L  GG  + +S+ SLED++VK++F   S         +    +   F+ +T+     T
Sbjct: 259 QRLTTGGRAVFMSYQSLEDKIVKRYFVDISTSKTPPGLPMELPEYAPKFKVVTRGAEKAT 318

Query: 297 QEDVAFNRRSRSAKLRAGM 315
             ++  N R+ S ++RA  
Sbjct: 319 DAEIEENPRAASVRVRAIE 337


>gi|319764380|ref|YP_004128317.1| s-adenosyl-methyltransferase mraw [Alicycliphilus denitrificans BC]
 gi|317118941|gb|ADV01430.1| S-adenosyl-methyltransferase MraW [Alicycliphilus denitrificans BC]
          Length = 308

 Score =  327 bits (840), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 117/310 (37%), Positives = 170/310 (54%), Gaps = 16/310 (5%)

Query: 20  HVPVLLEKVIALL---NPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSC 73
           H  VL  + +  L     AP    +D TFG GG++R   +       ++A D+DP A+  
Sbjct: 7   HTTVLASEAVDALLGGAAAPVGTFVDGTFGRGGHARLILQRLGAQGRLVAFDKDPEAIH- 65

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             E  R +  +FS+    FS L + +P   V GV+ DLG+SS QID   RGFSF+  GPL
Sbjct: 66  --EAARIHDARFSIRHQGFSHLGE-LPAASVAGVLLDLGISSPQIDDPARGFSFRFDGPL 122

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR-QSAPFQTTQDL 191
           DMRM  + G S ++ +  A    +  ++   GEE+ A  IA AIV RR Q  P   T +L
Sbjct: 123 DMRMDTTRGQSVAEWLAGAEAAQIAEVIRDYGEERFAGPIAKAIVARRTQGGPIVGTAEL 182

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++   V   +  + +PATR+FQA RIF+N E+EEL Q L ++   L  GG L+V+SFH
Sbjct: 183 ADIVAGAVKTREPGQ-NPATRTFQAFRIFINAELEELQQALEASLTVLAPGGRLVVISFH 241

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+VK+F A  S + M  R    +   P   +++ +  V P+  +V  N R+RSA +
Sbjct: 242 SLEDRIVKQFIARHSKE-MFDRRAPFAAPTPMRLKALGR--VKPSAAEVVANPRARSAVM 298

Query: 312 RAGMRTVERS 321
           R   RT   +
Sbjct: 299 RVAERTEVPA 308


>gi|256825484|ref|YP_003149444.1| S-adenosyl-methyltransferase MraW [Kytococcus sedentarius DSM
           20547]
 gi|256688877|gb|ACV06679.1| S-adenosyl-methyltransferase MraW [Kytococcus sedentarius DSM
           20547]
          Length = 335

 Score =  327 bits (840), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 117/320 (36%), Positives = 177/320 (55%), Gaps = 11/320 (3%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNPAPGKV----ILDATFGAGGYSRSFCKM--GSNVIA 63
           +     T   HVPV+L +++ LL PA   V     LD T G GG++ +  +    + V+ 
Sbjct: 5   TDGQPPTSTRHVPVMLPRILDLLAPALDGVDGAVHLDGTLGMGGHAEALLERFGHARVVG 64

Query: 64  LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDC 120
           +DRDP A+    E +  +  +F     T+ ++   +   GVD    ++FDLGVSS+Q+D 
Sbjct: 65  IDRDPQAIELASERLARFGHRFVAHHGTYDEVGPALDRLGVDSAQSMLFDLGVSSLQLDE 124

Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
             RGFS+ ++ PLDMRM+ + G SA+DV+N     DL R+L   GEE+ A +IA A+++ 
Sbjct: 125 VGRGFSYSRNAPLDMRMNPTVGQSAADVLNTYGHGDLARVLKEYGEERFAGKIASAVLRE 184

Query: 180 RQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R++ PF  +  L  L+++TV  + +    HPA R+FQALRI VN+E+   A  +  A   
Sbjct: 185 RETEPFTDSARLVELLERTVPAASQRTGGHPAKRTFQALRIEVNSELSIWATTVHRALDH 244

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L  GG L V+S+HSLEDRL K+ FA+ +         +    H    +  T+    P + 
Sbjct: 245 LAVGGRLAVLSYHSLEDRLTKQAFAAGATSSAPEGLPVELPEHAPWLRLATRGAEQPDEG 304

Query: 299 DVAFNRRSRSAKLRAGMRTV 318
           + A NRRS SA+LR   RT 
Sbjct: 305 ERAVNRRSSSARLRVAERTR 324


>gi|319953733|ref|YP_004165000.1| ribosomal RNA small subunit methyltransferase h [Cellulophaga
           algicola DSM 14237]
 gi|319422393|gb|ADV49502.1| Ribosomal RNA small subunit methyltransferase H [Cellulophaga
           algicola DSM 14237]
          Length = 302

 Score =  327 bits (839), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 106/307 (34%), Positives = 160/307 (52%), Gaps = 17/307 (5%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSC 73
           +  H PVLL++ I  LN     + +D TFG GG+S            + A D+D  A+  
Sbjct: 1   MSYHNPVLLKESIDGLNIKSDGIYVDVTFGGGGHSTEILSRLGAKGKLYAFDQDEDALKN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
             +      E+F L    F  +  ++   G   VDG++ D GVSS Q D  +RGFS +  
Sbjct: 61  AID-----DERFVLIHENFRFISQFLKFYGIKKVDGILGDFGVSSHQFDVAERGFSTRFD 115

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRMS  + +SA DVVN     DL R+L   G+ + A+ IA AI+  R+  P +TT 
Sbjct: 116 ADLDMRMSKRNAVSAYDVVNTYAYDDLRRVLFQYGDLRNANAIATAIIANREETPIKTTD 175

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            L S +++ +     ++I    + +QA+RI VN EIE + + L      L   G L V+S
Sbjct: 176 QLKSGLKQFLPARVEHKI--LAQIYQAIRIEVNQEIEVIKEFLLQVPDLLNEEGRLSVIS 233

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           +HSLEDRLVK FF S   +    +    + + P   + +   + VP+++++A N R+RSA
Sbjct: 234 YHSLEDRLVKNFFRSGKFEGEPDKDFYGNMSLP--LKKV-GGLTVPSKKEIAGNNRARSA 290

Query: 310 KLRAGMR 316
           KLR   +
Sbjct: 291 KLRIAEK 297


>gi|229490464|ref|ZP_04384305.1| S-adenosyl-methyltransferase MraW [Rhodococcus erythropolis SK121]
 gi|229322754|gb|EEN88534.1| S-adenosyl-methyltransferase MraW [Rhodococcus erythropolis SK121]
          Length = 336

 Score =  327 bits (839), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 111/319 (34%), Positives = 171/319 (53%), Gaps = 18/319 (5%)

Query: 20  HVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69
           HVPVLL +   LL PA         G  ++DAT G GG+S  F       ++I LDRD  
Sbjct: 16  HVPVLLHRADDLLGPAITAVGDGGAGAYMIDATLGLGGHSEFFLGKYPGLHLIGLDRDTN 75

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSSMQIDCGDR 123
           A+    E +  + ++ +    T+  ++D +   G      V  ++FDLGVSSMQ+D  DR
Sbjct: 76  ALRIASERLAPFADRTTFVHTTYDGIEDALEQAGLPSTESVHAILFDLGVSSMQLDEADR 135

Query: 124 GFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GF++    PLDMRM  + G++A++V+N  +  DL RIL   GEE+ A +IA  I+++R+ 
Sbjct: 136 GFAYSIDAPLDMRMDQTVGLTAAEVLNTYSHGDLARILSTYGEERFAGKIASEILRQRER 195

Query: 183 APFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            PF T+  L  L+ +T+  + +    HPA R+FQALRI VN E++ L   + +   AL  
Sbjct: 196 EPFTTSAALVELLYRTIPAATRRTGGHPAKRTFQALRIEVNAELDSLRAAVPAGLDALAV 255

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           GG ++ +S+ SLEDR+VK     RS         +        F+ +T+     +++++ 
Sbjct: 256 GGRVVFMSYQSLEDRVVKAELVPRSKSTSPEGLPVELPGMGPEFRILTRGAERASEQEIE 315

Query: 302 FNRRSRSAKLRAGMRTVER 320
            N RS   +LRA  R   R
Sbjct: 316 ENPRSAPVRLRAAERISRR 334


>gi|227494640|ref|ZP_03924956.1| S-adenosyl-methyltransferase [Actinomyces coleocanis DSM 15436]
 gi|226831822|gb|EEH64205.1| S-adenosyl-methyltransferase [Actinomyces coleocanis DSM 15436]
          Length = 344

 Score =  327 bits (839), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 110/308 (35%), Positives = 184/308 (59%), Gaps = 12/308 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKV----ILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSC 73
           H PVL+++V+ LL PA   V    ++DAT G GG++ +         VI +DRDP A+  
Sbjct: 22  HEPVLIDEVLDLLAPAFTGVEIATMIDATLGMGGHTEAVITAFPNVRVIGIDRDPNAIRL 81

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQK 129
             + +  + E+F    AT+  + +   + G    +D V+ DLGVSS+Q+D  +RGF++ +
Sbjct: 82  ASKRLESFGERFKAVHATYDSVYEVAEENGLAGKIDAVLMDLGVSSLQLDDDERGFAYSR 141

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           +  LDMRM  + GI+A++++  A+  +LTRIL   GEEK ASRIA  I K+R++ P +T+
Sbjct: 142 NTYLDMRMDPTQGITAAELLATASAAELTRILRTFGEEKFASRIARNIEKQRETKPIETS 201

Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L+ +++ ++  + +    +PA R+FQALR+ VN E++ LA  + +A ++LK GG L+V
Sbjct: 202 LELTEIVRASIPAAARRQGGNPAKRTFQALRVAVNEELDILADAVPAALESLKVGGRLVV 261

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
            S+ SLEDR+VK      S   +     +  +      +++T+K +  T+E +A N R+ 
Sbjct: 262 ESYQSLEDRIVKNVIKDGSEINIPPGLPVIPDHLKPSLENVTRKAIQATEEQIADNPRAA 321

Query: 308 SAKLRAGM 315
           S +LRA  
Sbjct: 322 SVRLRAAT 329


>gi|170287862|ref|YP_001738100.1| S-adenosyl-methyltransferase MraW [Thermotoga sp. RQ2]
 gi|262825881|sp|B1LCF9|RSMH_THESQ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|170175365|gb|ACB08417.1| S-adenosyl-methyltransferase MraW [Thermotoga sp. RQ2]
          Length = 299

 Score =  327 bits (839), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 113/308 (36%), Positives = 179/308 (58%), Gaps = 29/308 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77
           H+PV++ +VI  L P   K+ILD T G GG+SR+  +   G  +I +D D   +   +E 
Sbjct: 8   HIPVMVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEK 67

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++++ ++ SLF+ ++ +    +   GV   DG++ DLGVS+ Q+   +RGF+F++  PLD
Sbjct: 68  LKEFSDRASLFKISYREADFLLKTLGVEKVDGILMDLGVSTYQLKGENRGFTFEREEPLD 127

Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEK-QASRIAHAIVKRRQSAPFQTTQDLS 192
           MRM   S ++A  V+N+   ++L RI+   GEEK  A RIA  IV+ R   P  TT DL 
Sbjct: 128 MRMDLESEVTAQKVLNELPEEELARIIFEYGEEKKFARRIARKIVENR---PLNTTLDLV 184

Query: 193 SLIQKTVYFS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +++ +     +  + H AT++FQA+RI+VN E+E L + LR AE  L  GG ++V+SF
Sbjct: 185 KAVREALPSYEIRRRKRHFATKTFQAIRIYVNRELENLKEFLRKAEDLLNPGGRIVVISF 244

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDR+VK+ F +                     + +T+K V P++E++  N R+RS +
Sbjct: 245 HSLEDRIVKETFRNSKK-----------------LRILTEKPVRPSEEEIRENPRARSGR 287

Query: 311 LRAGMRTV 318
           LRA  R  
Sbjct: 288 LRAAERIE 295


>gi|263447803|sp|Q2NIH4|RSMH_AYWBP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 303

 Score =  327 bits (839), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 103/311 (33%), Positives = 161/311 (51%), Gaps = 13/311 (4%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70
           ++     H+ VL ++ I  L   P  + +DAT G  G++     +     + + D+D  A
Sbjct: 1   MNKQNFHHISVLKKEAIDFLKIKPEGIYVDATLGQCGHTIEIANLLQQGFLYSFDQDVEA 60

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYV--PDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
            +  ++T+  +     +  + F             +DG++FDLG+SS QID   RGFS+ 
Sbjct: 61  CTNAKKTLSPHLP-IEIIHSIFRIXSPISTTKSFSLDGILFDLGLSSCQIDNPQRGFSYL 119

Query: 129 KSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
            + PLDMRM+ +  I+A  ++N  +   L  I  + GE K AS +   I+K+R   P QT
Sbjct: 120 HNTPLDMRMNINQTITAQYILNNYSFAQLKNIFKLYGEVKNASLVVSEIIKQR---PLQT 176

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           + DL S+  +        + H A + FQALRI VN E+E L Q L  +   LK    ++V
Sbjct: 177 SYDLVSITDRFCNL---QKGHSAKKIFQALRIEVNQELESLKQALEQSLDLLKPNARIVV 233

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +SFHSLEDR++K FF   S  V+  +  I +         ITKK  +P++E++  N RS 
Sbjct: 234 ISFHSLEDRIIKHFFKKHSTFVLPKKLPI-AIIPQTPLSIITKKAFLPSEEEMQNNSRSI 292

Query: 308 SAKLRAGMRTV 318
           SAKLR  ++ V
Sbjct: 293 SAKLRVAVKNV 303


>gi|89898443|ref|YP_515553.1| S-adenosyl-methyltransferase MraW [Chlamydophila felis Fe/C-56]
 gi|123483153|sp|Q253Y0|RSMH_CHLFF RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|89331815|dbj|BAE81408.1| tRNA/rRNA methyltransferase [Chlamydophila felis Fe/C-56]
          Length = 298

 Score =  327 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 117/314 (37%), Positives = 159/314 (50%), Gaps = 25/314 (7%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI---ALD 65
           MS A       H+PVL+ + ++L      K   D T GAGG++ +F     +++     D
Sbjct: 1   MSEAPQ-----HIPVLVNECLSLFADRNPKFFCDVTLGAGGHAEAFLSAYPSIVSYDGSD 55

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125
           RD  A+S  +E +  +  +  L  A+F  L     +   DG++ DLGVSSMQ+D   RGF
Sbjct: 56  RDTMALSLAKERLEKFGNRVHLHHASFEDLAQNPRENVYDGILADLGVSSMQLDTLSRGF 115

Query: 126 SFQ-KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           SFQ     LDMRM  S G +AS+V+N    +DL RI    GEE Q    A AIV+ R+  
Sbjct: 116 SFQGDDHDLDMRMDTSKGTTASEVLNTLREEDLGRIFREYGEEPQWKNAAKAIVQFRRHK 175

Query: 184 PFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
              T +DL     +     +   +IHP T  FQALR++VN E  +L   L SA + L   
Sbjct: 176 KIITVRDLKEATTRVFPSYRLRKKIHPLTLIFQALRVYVNQEDVQLKVFLESAMRWLAPE 235

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G LI++SF S EDR VK FF                     V + +TKKVV+PT E+   
Sbjct: 236 GRLIIISFCSSEDRPVKWFFREAEAMG--------------VGKILTKKVVMPTYEETRK 281

Query: 303 NRRSRSAKLRAGMR 316
           N R RSAKLR   +
Sbjct: 282 NPRCRSAKLRCFEK 295


>gi|186701697|ref|ZP_02971391.1| S-adenosyl-methyltransferase MraW [Ureaplasma parvum serovar 6 str.
           ATCC 27818]
 gi|186700956|gb|EDU19238.1| S-adenosyl-methyltransferase MraW [Ureaplasma parvum serovar 6 str.
           ATCC 27818]
          Length = 308

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 104/310 (33%), Positives = 159/310 (51%), Gaps = 12/310 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI---ALDRDPFAVS 72
               H+ VLL + I LLN  P  + +D TFG GG+S+   K  S       LD+D  A++
Sbjct: 2   EFNQHITVLLNETIELLNIKPDGIYVDCTFGRGGHSQLILKKLSKKGKLICLDQDQEAIN 61

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK 129
                 ++      + +  F  L+  +       VDG +FDLG+SS Q+D   RGFS+ K
Sbjct: 62  FANNLFKN-NTNVIVIKTNFKNLKSALGAHKIFYVDGFIFDLGLSSPQLDDPKRGFSYHK 120

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           +  LDMRM  S  ++A  +VN  +   L  I    GE K    IA AIVK R      TT
Sbjct: 121 NAWLDMRMDQSQNLNAHYIVNNYSFAKLVSIFKRYGEIKYPKIIADAIVKERSIKEINTT 180

Query: 189 QDLSSLIQKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L  +I+K         + HPA   FQA+RI VN+E+  L +    A   L   G++ +
Sbjct: 181 LELVEIIKKYSPKKNLFEKKHPARLFFQAIRIEVNDELNILEKAFNDAISMLNPLGVVAI 240

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +SFHSLED++VKK F + +   + +   +P N +   +  + +K ++P+ +++  N RSR
Sbjct: 241 ISFHSLEDKIVKKVFNNYAK--IKLPKEVPINNYVNKYSLLNQK-IMPSTQELNDNNRSR 297

Query: 308 SAKLRAGMRT 317
           S+ LR  +R 
Sbjct: 298 SSILRGLIRN 307


>gi|332528826|ref|ZP_08404800.1| 16S rRNA m(4)C1402 methyltranserfase [Hylemonella gracilis ATCC
           19624]
 gi|332041685|gb|EGI78037.1| 16S rRNA m(4)C1402 methyltranserfase [Hylemonella gracilis ATCC
           19624]
          Length = 320

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 120/320 (37%), Positives = 181/320 (56%), Gaps = 21/320 (6%)

Query: 20  HVPVLLEKVIALLNPAP----------GKVILDATFGAGGYSRSFCKMGS---NVIALDR 66
           H  VLL + +  L   P              +DATFG GG+SR      +    + A D+
Sbjct: 7   HTTVLLNEAVDALLNRPVELPDSLKTEDGHYVDATFGRGGHSRLLLSRLAPQARLTAFDK 66

Query: 67  DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126
           DP AV+  Q+ ++    +FS+    F+ L + +P +   GV+ DLG+SS QID   RGFS
Sbjct: 67  DPQAVAEAQKIVQS-DARFSIRHQGFAHL-NELPTQSCQGVLMDLGISSPQIDDPARGFS 124

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-AP 184
           F+  GPLDMRM  + G S ++ +  A V+++  ++   GEE+ A  IA AIV+RRQ+  P
Sbjct: 125 FRAEGPLDMRMDPTRGRSVAEWLMSAEVREIAEVIRDYGEERFAGPIAKAIVERRQAGRP 184

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
             TT +L+ L+   V   +  + +PATR+FQA RIF+N E+EEL   L ++   L+ GG 
Sbjct: 185 LATTAELAQLVAGAVKTREPGQ-NPATRTFQAFRIFINAELEELQAALEASLDVLQTGGR 243

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           L+V+SFHSLEDR+VK+F A  + +V   R    +   P   +++ +  V P++ +VA N 
Sbjct: 244 LVVISFHSLEDRIVKQFIARHAREVY-DRRAPFAAPTPTRLRAVER--VRPSEAEVAANP 300

Query: 305 RSRSAKLRAGMRTVERSIED 324
           R+RSA +R  +RT     E 
Sbjct: 301 RARSAIMRVAVRTDAEREEA 320


>gi|33593961|ref|NP_881605.1| S-adenosyl-methyltransferase MraW [Bordetella pertussis Tohama I]
 gi|33598269|ref|NP_885912.1| S-adenosyl-methyltransferase MraW [Bordetella parapertussis 12822]
 gi|33603180|ref|NP_890740.1| S-adenosyl-methyltransferase MraW [Bordetella bronchiseptica RB50]
 gi|42558972|sp|Q7VUP6|RSMH_BORPE RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|42558973|sp|Q7W4A7|RSMH_BORPA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|42558974|sp|Q7WFR5|RSMH_BORBR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|33564035|emb|CAE43301.1| S-adenosyl-methyltransferase [Bordetella pertussis Tohama I]
 gi|33566827|emb|CAE39042.1| S-adenosyl-methyltransferase [Bordetella parapertussis]
 gi|33568811|emb|CAE34569.1| S-adenosyl-methyltransferase [Bordetella bronchiseptica RB50]
 gi|332383379|gb|AEE68226.1| S-adenosyl-methyltransferase MraW [Bordetella pertussis CS]
          Length = 364

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 119/331 (35%), Positives = 173/331 (52%), Gaps = 31/331 (9%)

Query: 19  DHVPVLLEKVIALL---------------NPAPG-------KVILDATFGAGGYSRSFCK 56
           +H PVLLE  +  L                P P         V +D TFG GG+SR+   
Sbjct: 4   EHRPVLLEPTVDALVLPDFGGKGAHRQAGEPGPDAATRLQHGVFVDGTFGRGGHSRALLA 63

Query: 57  MGS---NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFD 110
                  ++  D+DP A++  +E +     +  +    F+ + + +  +G   VDGV+ D
Sbjct: 64  RLGAQARLVVFDKDPQAIAVARE-LAAGDGRVEVVHGGFATMAEELTARGIEQVDGVMLD 122

Query: 111 LGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQA 169
           LGVSS QID  +RGFSF + GPLDMRM  + G + +D + QA+V ++  ++   GEE+ A
Sbjct: 123 LGVSSPQIDDAERGFSFMRDGPLDMRMDTTRGPTVADWLAQASVDEMREVIADYGEERFA 182

Query: 170 SRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELA 229
            ++A AI   R + P  TT  L+  +   V  ++    HPATR+FQALRI++N E+EELA
Sbjct: 183 FQVAKAIAACRATRPLHTTLQLAECVAGAV-RTREKGQHPATRTFQALRIYINRELEELA 241

Query: 230 QGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT 289
           + L SA   L  GG L V+SFHSLEDR+VK+  A+ +    A   +    +        +
Sbjct: 242 RALASALDLLGPGGRLAVISFHSLEDRMVKQCIAAAARPAAAHARLPLRESELPQPLVRS 301

Query: 290 KKVVVPTQEDVAFNRRSRSAKLRAGMRTVER 320
              VV    +VA N R+RSA LR   RT E 
Sbjct: 302 LGKVVADDVEVAGNARARSAILRVAERTGEP 332


>gi|171462979|ref|YP_001797092.1| S-adenosyl-methyltransferase MraW [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|262824846|sp|B1XT01|RSMH_POLNS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|171192517|gb|ACB43478.1| S-adenosyl-methyltransferase MraW [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 316

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 111/312 (35%), Positives = 186/312 (59%), Gaps = 21/312 (6%)

Query: 20  HVPVLLEKVIALLNPAP--------GKV-ILDATFGAGGYSRSFCKMG---SNVIALDRD 67
           H PVLL + +  L   P          + ++D TFG GG++++  K     +++I+ D+D
Sbjct: 5   HRPVLLAEAVTALVGGPLIQNQNSENHILVIDGTFGRGGHTQALLKELNPSAHMISFDKD 64

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
             A++  Q+       +  +   +F+Q+  Y   + VDG++ DLG+SS Q+D   RGFSF
Sbjct: 65  LDAIAVAQKI---NDPRLKIVHDSFAQMDQYAEAESVDGILLDLGISSPQVDEAHRGFSF 121

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA-PF 185
           ++ GPLDMRM+   G++A++ + QA+++++T ++   GEE+ A +IA AIV +R+   P 
Sbjct: 122 RREGPLDMRMNTDHGLTAAEWLEQASLEEITHVIKTYGEERFAFQIARAIVAKREDGLPP 181

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           +TT  L+SL+   V  ++     PATR+FQALRIF+N E+E+L  GL++A K LK G  L
Sbjct: 182 KTTTQLASLVSSVV-RTREAGQDPATRTFQALRIFINRELEDLELGLKAAMKLLKPGARL 240

Query: 246 IVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
            V+SFHSLEDR+VK+F  + +   V     +   +   +  + I++  + P+  +V+ N 
Sbjct: 241 AVISFHSLEDRIVKQFMQAHAKVDVPRGLPVREKDLPQSALKIISR--LKPSDAEVSENP 298

Query: 305 RSRSAKLRAGMR 316
           R+RSA +R   +
Sbjct: 299 RARSAIMRVAEK 310


>gi|257458293|ref|ZP_05623442.1| S-adenosyl-methyltransferase MraW [Treponema vincentii ATCC 35580]
 gi|257444320|gb|EEV19414.1| S-adenosyl-methyltransferase MraW [Treponema vincentii ATCC 35580]
          Length = 315

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 106/305 (34%), Positives = 157/305 (51%), Gaps = 8/305 (2%)

Query: 20  HVPVLLEKVIALLNPA-PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQE 76
           H PVLL++ + LL P  P  +++D T G GG+S +F        VI +D DP   +  + 
Sbjct: 5   HTPVLLQECLQLLAPETPDPLLIDGTLGEGGHSEAFLNRFPQLKVIGIDADPAIQAKAKV 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV--DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
            +  +  +   F        D  P        ++FDLG+S        RGFSF    PLD
Sbjct: 65  RLAPFGNRVRFFLGWSDDFFDQYPQDNPAPSLILFDLGISLFHYTESKRGFSFGADEPLD 124

Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MR++    ++A+D+VN  + K L  +L +  EE+ +  IA A+V  R+  PF   + LS 
Sbjct: 125 MRINPDESLTAADIVNTYSEKKLADVLYLYAEERFSRPIARAVVAEREKHPFTEARQLSE 184

Query: 194 LIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +   V    ++  IHPAT++FQALRI VN+E++ L + L  A   L  GG + V+SFHS
Sbjct: 185 TVFHAVPARFRHGPIHPATKTFQALRIAVNSELDRLPRLLEKAFACLAEGGKMGVISFHS 244

Query: 253 LEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK FF   +   +      I +         +TKK V P+ E+ A N  SRSA+L
Sbjct: 245 LEDRIVKLFFRDLAKSCICPPEMPICTCGGMPRAALLTKKPVCPSAEETAANAPSRSARL 304

Query: 312 RAGMR 316
           R   +
Sbjct: 305 RVIKK 309


>gi|332297592|ref|YP_004439514.1| Ribosomal RNA small subunit methyltransferase H [Treponema
           brennaborense DSM 12168]
 gi|332180695|gb|AEE16383.1| Ribosomal RNA small subunit methyltransferase H [Treponema
           brennaborense DSM 12168]
          Length = 330

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 109/321 (33%), Positives = 174/321 (54%), Gaps = 12/321 (3%)

Query: 20  HVPVLLEKVIALLNP-----APGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVS 72
           H PVLL++ +  L+P          ++D+T G GG+S +F    S++  I LD DP   +
Sbjct: 5   HTPVLLQECLDALSPVGEPFEREPFMIDSTLGEGGHSEAFLTKYSDLRIIGLDADPNIQA 64

Query: 73  CGQETMRDYKEQFSLFQATFSQL-QDYVPDK-GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
             +E +  +  + +     F+    +Y  D    D ++FDLG+S    +   RGFSF++ 
Sbjct: 65  RAKERLAPFGSRMNFHLGWFNDFYANYPGDMPKPDLILFDLGISLFHYEKSGRGFSFRQD 124

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMR++   G SA D+VN  +   L  I  I GEE+ + RIA AI + R  +  +T  
Sbjct: 125 EPLDMRLNPDAGPSAGDLVNSLSSAQLADIFYIYGEERYSRRIAAAIERERAQSKIETAA 184

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L+ ++ ++V  + ++  IHPAT++FQALRI VN E+  L + L +A   LK GG + V+
Sbjct: 185 ALADIVYRSVPAAYRHGAIHPATKTFQALRIAVNRELNRLPEALPAAFNVLKCGGKMGVI 244

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +FHSLEDR+VK +F + S   +      I         + +T+K + P+  +VA N  SR
Sbjct: 245 TFHSLEDRIVKNYFRNLSKVCICPPEQPICICGGVPHAELLTRKPLGPSGAEVAVNSPSR 304

Query: 308 SAKLRAGMRTVERSIEDDSFV 328
           SAKLR   +  + S +  + +
Sbjct: 305 SAKLRVIRKLRDISAQSAALI 325


>gi|183508652|ref|ZP_02958151.1| S-adenosyl-methyltransferase MraW [Ureaplasma parvum serovar 14
           str. ATCC 33697]
 gi|182676119|gb|EDT88024.1| S-adenosyl-methyltransferase MraW [Ureaplasma parvum serovar 14
           str. ATCC 33697]
          Length = 308

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 104/310 (33%), Positives = 159/310 (51%), Gaps = 12/310 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI---ALDRDPFAVS 72
               H+ VLL + I LLN  P  + +D TFG GG+S+   K  S       LD+D  A++
Sbjct: 2   EFNQHITVLLNETIELLNIKPDGIYVDCTFGRGGHSQLILKKLSKKGKLICLDQDQEAIN 61

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK 129
                 ++      + +  F  L+  +       VDG +FDLG+SS Q+D   RGFS+ K
Sbjct: 62  FANNLFKN-NTNVIVIKTNFKNLKSALSAHKIFYVDGFIFDLGLSSPQLDDPKRGFSYHK 120

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           +  LDMRM  S  ++A  +VN  +   L  I    GE K    IA AIVK R      TT
Sbjct: 121 NAWLDMRMDQSQNLNAHYIVNNYSFVKLVSIFKRYGEIKYPKIIADAIVKERSIKEINTT 180

Query: 189 QDLSSLIQKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L  +I+K         + HPA   FQA+RI VN+E+  L +    A   L   G++ +
Sbjct: 181 LELVEIIKKYSPKKNLFEKKHPARLFFQAIRIEVNDELNILEKAFNDAISMLNPLGVVAI 240

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +SFHSLED++VKK F + +   + +   +P N +   +  + +K ++P+ +++  N RSR
Sbjct: 241 ISFHSLEDKIVKKVFNNYAK--IKLPKEVPINNYVNKYSLLNQK-IMPSTQELNDNNRSR 297

Query: 308 SAKLRAGMRT 317
           S+ LR  +R 
Sbjct: 298 SSILRGLIRN 307


>gi|13357947|ref|NP_078221.1| hypothetical protein UU386 [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|170762354|ref|YP_001752469.1| S-adenosyl-methyltransferase MraW [Ureaplasma parvum serovar 3 str.
           ATCC 27815]
 gi|20139253|sp|Q9PQA4|RSMH_UREPA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263504475|sp|B1AJ25|RSMH_UREP2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|11278383|pir||D82897 conserved hypothetical UU386 [imported] - Ureaplasma urealyticum
 gi|6899371|gb|AAF30796.1|AE002136_3 conserved hypothetical [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|168827931|gb|ACA33193.1| S-adenosyl-methyltransferase MraW [Ureaplasma parvum serovar 3 str.
           ATCC 27815]
          Length = 308

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 104/310 (33%), Positives = 159/310 (51%), Gaps = 12/310 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI---ALDRDPFAVS 72
               H+ VLL + I LLN  P  + +D TFG GG+S+   K  S       LD+D  A++
Sbjct: 2   EFNQHITVLLNETIELLNIKPDGIYVDCTFGRGGHSQLILKKLSKKGKLICLDQDQEAIN 61

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK 129
                 ++      + +  F  L+  +       VDG +FDLG+SS Q+D   RGFS+ K
Sbjct: 62  FANNLFKN-NTNVIVIKTNFKNLKSALSAHKIFYVDGFIFDLGLSSPQLDDPKRGFSYHK 120

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           +  LDMRM  S  ++A  +VN  +   L  I    GE K    IA AIVK R      TT
Sbjct: 121 NAWLDMRMDQSQNLNAHYIVNNYSFAKLVSIFKRYGEIKYPKIIADAIVKERSIKEINTT 180

Query: 189 QDLSSLIQKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L  +I+K         + HPA   FQA+RI VN+E+  L +    A   L   G++ +
Sbjct: 181 LELVEIIKKYSPKKNLFEKKHPARLFFQAIRIEVNDELNILEKAFNDAISMLNPLGVVAI 240

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +SFHSLED++VKK F + +   + +   +P N +   +  + +K ++P+ +++  N RSR
Sbjct: 241 ISFHSLEDKIVKKVFNNYAK--IKLPKEVPINNYVNKYSLLNQK-IMPSTQELNDNNRSR 297

Query: 308 SAKLRAGMRT 317
           S+ LR  +R 
Sbjct: 298 SSILRGLIRN 307


>gi|297569458|ref|YP_003690802.1| S-adenosyl-methyltransferase MraW [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296925373|gb|ADH86183.1| S-adenosyl-methyltransferase MraW [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 303

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 106/316 (33%), Positives = 162/316 (51%), Gaps = 31/316 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H PV+  +V+  L PA G + +D   G GG++ +  +       +I  D D  A++  + 
Sbjct: 5   HQPVMPAEVLFWLAPAAGGIYVDGNLGLGGHAAAILEQSGPSGRLIGFDWDQEALARARS 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC------GDRGFSF 127
            +  + ++  L    F +L+  + +  +   DG++ DLG+SS+Q+D         RGFSF
Sbjct: 65  NLARFGDRVHLQPCNFIELEATLAELAISRIDGILLDLGLSSLQLDSSGEAAGAGRGFSF 124

Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           ++  PLDMRM     ++A+D++   +  +L  I    GEE+QA RIA  +VK+RQ  P  
Sbjct: 125 RRPEPLDMRMDRRQELTAADLLRDLSAAELADIFYYYGEERQARRIAGWLVKQRQQTPIV 184

Query: 187 TTQDLSSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           TT  L+ L+   V    + R IH ATR FQALRI VN E+E L + L  A   L      
Sbjct: 185 TTVQLAELVAAAVPRRFHPRNIHVATRVFQALRIAVNRELENLEKILAVAPSFLSPKARF 244

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           +V+SFHSLEDRLVK+ F                       + +T + + P + ++  N R
Sbjct: 245 VVISFHSLEDRLVKRAFRED-----------------PRLKILTTRPLQPQEAELQRNPR 287

Query: 306 SRSAKLRAGMRTVERS 321
           +RSAKLR   R  E +
Sbjct: 288 ARSAKLRVAERREETA 303


>gi|148269200|ref|YP_001243660.1| S-adenosyl-methyltransferase MraW [Thermotoga petrophila RKU-1]
 gi|281411498|ref|YP_003345577.1| S-adenosyl-methyltransferase MraW [Thermotoga naphthophila RKU-10]
 gi|262825857|sp|A5IIR1|RSMH_THEP1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|147734744|gb|ABQ46084.1| S-adenosyl-methyltransferase MraW [Thermotoga petrophila RKU-1]
 gi|281372601|gb|ADA66163.1| S-adenosyl-methyltransferase MraW [Thermotoga naphthophila RKU-10]
          Length = 299

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 112/308 (36%), Positives = 179/308 (58%), Gaps = 29/308 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77
           H+PV++ +VI  L P   K+ILD T G GG+S++  +   G  +I +D D   +   +E 
Sbjct: 8   HIPVMVREVIEFLKPEDEKIILDCTVGEGGHSKAILEHCPGCRIIGIDVDSEVLRIAEEK 67

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++++ ++ SLF+ ++ +    +   GV   DG++ DLGVS+ Q+   +RGF+F++  PLD
Sbjct: 68  LKEFSDRASLFKISYREADFLLKTLGVEKVDGILMDLGVSTYQLKGENRGFTFEREEPLD 127

Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEK-QASRIAHAIVKRRQSAPFQTTQDLS 192
           MRM   S ++A  V+N+   ++L RI+   GEEK  A RIA  IV+ R   P  TT DL 
Sbjct: 128 MRMDLESEVTAQKVLNELPEEELARIIFEYGEEKKFARRIARKIVENR---PLNTTLDLV 184

Query: 193 SLIQKTVYFS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +++ +     +  + H AT++FQA+RI+VN E+E L + LR AE  L  GG ++V+SF
Sbjct: 185 KAVREALPSYEIRRRKRHFATKTFQAIRIYVNRELENLKEFLRKAEDLLNPGGRIVVISF 244

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDR+VK+ F +                     + +T+K V P++E++  N R+RS +
Sbjct: 245 HSLEDRIVKETFRNSKK-----------------LRILTEKPVRPSEEEIRENPRARSGR 287

Query: 311 LRAGMRTV 318
           LRA  R  
Sbjct: 288 LRAAERIE 295


>gi|94970665|ref|YP_592713.1| S-adenosyl-methyltransferase MraW [Candidatus Koribacter versatilis
           Ellin345]
 gi|263433351|sp|Q1IKG1|RSMH_ACIBL RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|94552715|gb|ABF42639.1| methyltransferase [Candidatus Koribacter versatilis Ellin345]
          Length = 313

 Score =  326 bits (837), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 120/310 (38%), Positives = 174/310 (56%), Gaps = 30/310 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           HV VL ++ I  L    G   LDAT G GG+S    K      ++IALD+D  A+   + 
Sbjct: 20  HVSVLSQEAIDFLAIRRGGTYLDATLGLGGHSYEIAKRLGAQGHLIALDKDTNALEMARR 79

Query: 77  TMRDYKE-------QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
            +    +       Q +L  A+F++++ ++  K +DGV+ DLG+SSMQ+    RGFSFQ 
Sbjct: 80  RLEQVPDDLKEDWPQITLLHASFAEMKQHIASKSLDGVLADLGISSMQLQDAGRGFSFQA 139

Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM+  G ++A  VVN  + ++L  ++   GEE+++ RIA AI + R   P +TT
Sbjct: 140 EGPLDMRMNPHGDLTAEQVVNHTSERELADVIYEFGEERRSRRIARAICRAR---PIRTT 196

Query: 189 QDLSSLIQKTVYF--SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
             L+ +I            RIHPAT++FQALRIFVN+E+++L + L S    L   G L+
Sbjct: 197 AHLAQVISVAARPMNQAERRIHPATKTFQALRIFVNHELDDLKELLASVPSRLVPRGRLV 256

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V+SFHSLEDR+VK      +                  ++ +TKK V  T+E++  N RS
Sbjct: 257 VISFHSLEDRIVKDSLRDGASAG--------------KYELLTKKPVTATEEEIDRNPRS 302

Query: 307 RSAKLRAGMR 316
           RSAKLRA  R
Sbjct: 303 RSAKLRAAAR 312


>gi|228469401|ref|ZP_04054415.1| S-adenosyl-methyltransferase MraW [Porphyromonas uenonis 60-3]
 gi|228309085|gb|EEK17715.1| S-adenosyl-methyltransferase MraW [Porphyromonas uenonis 60-3]
          Length = 310

 Score =  326 bits (837), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 106/316 (33%), Positives = 163/316 (51%), Gaps = 20/316 (6%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           MS+ ++HT      VL E  + LL   P  + +D T G GG+SR+  +        I LD
Sbjct: 1   MSTKLYHTA-----VLCEDSLNLLVTTPSGLYVDVTMGGGGHSRALLERLSPEGRCIGLD 55

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCG 121
           +DP A++   +       ++      F  L  ++   G    VDG++ DLGVSS   D  
Sbjct: 56  QDPDAMANAPQ-----DSRYHFVATNFRYLGQWLDYWGLAGEVDGILADLGVSSHHFDSE 110

Query: 122 DRGFSFQKSGPL-DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
           +RGFSF+    + DMRM+  SG++A D++   + + L  IL   GE   A RIA  +V  
Sbjct: 111 ERGFSFRYEEAMPDMRMNSRSGVTARDLLLSYSEEQLADILYYYGELHDARRIAALLVSH 170

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
           R    + T   L  ++   +        +  +R FQALRI VN+E+  L Q L  + + L
Sbjct: 171 RAVG-YPTIASLMEVLAPVLPKGGPQLRNKLSRIFQALRIEVNDELGALRQLLSDSVRLL 229

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
           K GG + ++S+HSLEDR+VK+FF   S +  +        + PA  + +TKK + P+ ++
Sbjct: 230 KPGGRIAIISYHSLEDRMVKEFFRLGSFEQPSEALAGMPLSKPAPLRVVTKKAITPSADE 289

Query: 300 VAFNRRSRSAKLRAGM 315
           +A N R+RSAKLR   
Sbjct: 290 IADNNRARSAKLRVAE 305


>gi|261337512|ref|ZP_05965396.1| S-adenosyl-methyltransferase MraW [Bifidobacterium gallicum DSM
           20093]
 gi|270277911|gb|EFA23765.1| S-adenosyl-methyltransferase MraW [Bifidobacterium gallicum DSM
           20093]
          Length = 356

 Score =  326 bits (837), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 107/314 (34%), Positives = 157/314 (50%), Gaps = 11/314 (3%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSN--VIALDRD 67
           + H    H PVLLE+ + L+ PA   PG V++D T G  G++ +F K   N  ++ +DRD
Sbjct: 1   MDHITQIHQPVLLEQCVDLVVPALNAPGSVVVDCTLGLAGHATAFLKAAPNATLLGIDRD 60

Query: 68  PFAVSCGQETMRDYK--EQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGD 122
             A++   + M      ++F    A F      V   G   V  V  DLG+SS+QID  +
Sbjct: 61  AEALALATQRMEHEGLADRFIAVHAAFDDFGQAVDAHGLGPVQAVFMDLGLSSLQIDETE 120

Query: 123 RGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFS+    PLDMRM  +  ++A  ++   +   L RI    GEE+ A +IA  IV  R 
Sbjct: 121 RGFSYSHDAPLDMRMDTTQPLTAQTILATYDEASLARIFKDYGEERFARQIARRIVSTRN 180

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
             P  T+  L+ L+   +  +     +PA R FQALRI VN E+++L + L      L  
Sbjct: 181 REPLTTSAQLNRLVDAVIPQAHRASGNPAKRVFQALRIEVNGELDKLRRTLPQIANRLAV 240

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           GG L+V S+HSLEDR VK F        +     +  +     F ++TK  +    E++ 
Sbjct: 241 GGRLVVESYHSLEDRTVKTFMQQGLSIDVPADMPVIPDDAQPFFSALTKGALKADAEEIE 300

Query: 302 FNRRSRSAKLRAGM 315
            N RS S +LRA  
Sbjct: 301 HNPRSASVRLRAVE 314


>gi|307720766|ref|YP_003891906.1| S-adenosyl-methyltransferase MraW [Sulfurimonas autotrophica DSM
           16294]
 gi|306978859|gb|ADN08894.1| S-adenosyl-methyltransferase MraW [Sulfurimonas autotrophica DSM
           16294]
          Length = 308

 Score =  326 bits (837), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 103/303 (33%), Positives = 173/303 (57%), Gaps = 15/303 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76
            H+PVL ++VI         +++D T G GG+S    +   N  +IA+D+D  A+    +
Sbjct: 5   PHIPVLYKEVIEAFKDLKEGIVIDCTMGYGGHSSLLLEANQNIKLIAIDQDQTAIDFSSK 64

Query: 77  TMRDYKEQFSLFQATFSQ-LQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            +  Y E+ S+ +  FS  +++ + +     + G++ D+GVSS+Q+D  +RGFS++    
Sbjct: 65  RLEKYGERVSIRKGRFSAVIKEILQEVNPNEIKGILADIGVSSLQLDQKERGFSYESDN- 123

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM     ++AS+VVN+ +  +L RIL   GE +   +IA  IV+ R   PF + ++L
Sbjct: 124 LDMRMDKDAQLNASNVVNEYSKTELERILLEYGELRNYKKIADVIVQNR---PFVSAKEL 180

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           S  ++   + S+  +IHPAT   QA+RI VN+E+ EL   L+S E+A      + ++SFH
Sbjct: 181 SEAVRP--HMSRGKKIHPATLLMQAIRIEVNDELGELKSLLQSIEEAKLPEAKVAIISFH 238

Query: 252 SLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VKK F+  S   +            +  + + +TKK ++  ++++  N RSRSA
Sbjct: 239 SLEDRIVKKEFSKWSKSCICPPEAFRCSCGNNHQLGKILTKKPIMAQEDELKENVRSRSA 298

Query: 310 KLR 312
           K+R
Sbjct: 299 KMR 301


>gi|254459393|ref|ZP_05072814.1| S-adenosyl-methyltransferase MraW [Campylobacterales bacterium GD
           1]
 gi|207084006|gb|EDZ61297.1| S-adenosyl-methyltransferase MraW [Campylobacterales bacterium GD
           1]
          Length = 307

 Score =  326 bits (836), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 103/305 (33%), Positives = 168/305 (55%), Gaps = 15/305 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76
            H+PVL  +V+         +I+D T G GG+S    +   N  +IA+D+D  A+    +
Sbjct: 5   PHIPVLYREVVDTFKDIKNGIIIDCTMGYGGHSSMILESNPNIELIAIDQDQTAIDFSTK 64

Query: 77  TMRDYKEQFSLFQATFSQ-LQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            + ++ ++ S+ +  FS  ++D + + GVD   GV+ D+GVSS+Q+D  DRGFS++    
Sbjct: 65  RLEEFGDRVSIRKGRFSSVIKDIIAEYGVDKIRGVLADIGVSSLQLDQKDRGFSYESEN- 123

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM     +SA +VVN+ +  +L  IL   GE +   +IA AIV  R   PF + ++L
Sbjct: 124 LDMRMDKDAPLSAKNVVNEYSNSELENILLEYGELRNYKKIASAIVNSR---PFTSAKEL 180

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           S   +  +   K  +IHPAT   QA+RI VN+E+ EL   L+S E +      + V+SFH
Sbjct: 181 SERTKHLMPHGK--KIHPATLLMQAIRIEVNDELGELKSLLQSIEDSQFTDATVAVISFH 238

Query: 252 SLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK+ +   +   +          +   ++ + ++KK +    +++  N RSRSA
Sbjct: 239 SLEDRIVKQTYTKWTKNCICPDEAMRCTCSRDNSLGRILSKKPITAQDDELKENPRSRSA 298

Query: 310 KLRAG 314
           K+R  
Sbjct: 299 KMRVF 303


>gi|320093982|ref|ZP_08025809.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319979088|gb|EFW10604.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 355

 Score =  326 bits (836), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 106/307 (34%), Positives = 168/307 (54%), Gaps = 11/307 (3%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCG 74
           H PVLL++ + +L PA   PG V++DAT G GG++    +    +  I +DRDP AV+  
Sbjct: 40  HTPVLLDECLDMLAPAIEGPGSVLIDATLGMGGHTEGALRRFPGLVVIGIDRDPEAVALA 99

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            + +  +  +F   +AT+  +   V D       DGV+ DLGVSS+Q+D  +RGFS+ + 
Sbjct: 100 SKRLEGFGPRFLAVRATYDSIGQVVADHAPRGEADGVLMDLGVSSLQLDDAERGFSYSQD 159

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM  + G+SA++++  A  +++TRIL   GEE+ A RIA  +V RR + P   T 
Sbjct: 160 APLDMRMDPTRGVSAAELLATAPQEEITRILRAYGEERFAPRIARLVVARRGAQPLTRTG 219

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L  ++++ +   ++    +PA R+FQALR+ VN+E+  L + L +A  +L+ GG L+V 
Sbjct: 220 QLVDIVREAIPAPARRTGGNPAKRTFQALRVAVNDELAILERALPAALASLRVGGRLVVE 279

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           S+ SLEDR+VK      S         +  +        +T+        +   N RS S
Sbjct: 280 SYQSLEDRIVKNVLRGGSTVSAPPGLPVVPDEARPRLALLTRGAGRAPASEQEKNPRSAS 339

Query: 309 AKLRAGM 315
            +LR   
Sbjct: 340 VRLRGAE 346


>gi|162449928|ref|YP_001612295.1| methyltransferase [Sorangium cellulosum 'So ce 56']
 gi|262826606|sp|A9FI25|RSMH_SORC5 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|161160510|emb|CAN91815.1| methyltransferase [Sorangium cellulosum 'So ce 56']
          Length = 315

 Score =  326 bits (836), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 111/303 (36%), Positives = 175/303 (57%), Gaps = 22/303 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETM 78
           HV VL  +V+A L+P    V +DAT GAGG++ +  +  G+ VI +DRD  A++  +  +
Sbjct: 23  HVSVLGREVLAALSPVSEGVYVDATLGAGGHTATILETPGARVIGIDRDERALAIARARL 82

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
               ++ +     FS+++ ++   GV   DG++ D+GVSSMQ+D   RG SF+  GPLDM
Sbjct: 83  ARAGDRVTYVHGEFSEIERHLAALGVPQVDGLLADIGVSSMQLDDPGRGMSFRAEGPLDM 142

Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM  S G +A +++ + + ++L  ++   GEE+++ R+A  I +   S    TT DL   
Sbjct: 143 RMDSSRGETALELIERLSDEELADLIYRYGEERRSRRVARCIKQAADSGELVTTLDLRRA 202

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           + + V  ++   + PATR+FQALRI VN E+++L   L +A + +  GG+L V+SFHSLE
Sbjct: 203 VVRAVGPARIGGVDPATRTFQALRIAVNGELDQLEALLEAAPRIIAPGGVLAVISFHSLE 262

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           DR+VK+                     P V++ +TKK V    ++V  N R+RSAKLRA 
Sbjct: 263 DRIVKRALRE-----------------PEVWEPLTKKPVTAGDDEVEGNPRARSAKLRAA 305

Query: 315 MRT 317
            R 
Sbjct: 306 RRV 308


>gi|8134827|sp|O69560|RSMH_MYCLE RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263460319|sp|B8ZQP2|RSMH_MYCLB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|3080481|emb|CAA18676.1| hypothetical protein MLCB268.10c [Mycobacterium leprae]
          Length = 340

 Score =  326 bits (836), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 117/321 (36%), Positives = 174/321 (54%), Gaps = 18/321 (5%)

Query: 15  HTIGDHVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKMGS--NVIAL 64
            ++  HVPV  ++ + LL PA           +++DAT G GG++  F        +I L
Sbjct: 5   SSVFGHVPVFAQRCVTLLAPALTRHHADGSNAILVDATLGVGGHAERFLTEFPGLRLIGL 64

Query: 65  DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSSMQI 118
           DRDP A+   +  +  + ++ +L    +  L   +   G      VDGV+FDLGVSSMQ+
Sbjct: 65  DRDPSALDIARTRLMRFADRVTLIHTRYDNLAVALNKFGYAAVESVDGVLFDLGVSSMQL 124

Query: 119 DCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177
           DC +RGFS+ +  PLDMRM   S +SA+D+VN  +   L  IL   GEE+ A RIA  IV
Sbjct: 125 DCAERGFSYAQDVPLDMRMDPWSPVSAADIVNNYDEAALADILRRYGEERFARRIAAHIV 184

Query: 178 KRRQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236
           +RR   PF +T +L +L+ + +   ++    HPA R+FQALRI VN+E+  L+  L +A 
Sbjct: 185 RRRAHTPFTSTAELVALLYQAIPAPARRIGGHPAKRTFQALRIAVNDELNSLSNVLPAAL 244

Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296
            AL   G L+V+++ SLEDR+VK+ FA            I    H   F+ +T+      
Sbjct: 245 DALTVAGRLVVLAYQSLEDRIVKRVFADAVSSRTPAGLPIELPGHGPRFRLLTRGAEHAD 304

Query: 297 QEDVAFNRRSRSAKLRAGMRT 317
             ++  N RS + +LRA  RT
Sbjct: 305 AAEIECNPRSAAVRLRALQRT 325


>gi|332299370|ref|YP_004441291.1| Ribosomal RNA small subunit methyltransferase H [Porphyromonas
           asaccharolytica DSM 20707]
 gi|332176433|gb|AEE12123.1| Ribosomal RNA small subunit methyltransferase H [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 338

 Score =  325 bits (835), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 104/306 (33%), Positives = 155/306 (50%), Gaps = 15/306 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H  VL E  + LL   P  + +D T G GG+SR+  +        I LD+DP AV     
Sbjct: 35  HTAVLCEDSLDLLVTTPTGLYVDVTMGGGGHSRALLERLAPEGRCIGLDQDPDAVVNA-- 92

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  ++      F  L  ++   G    VDG++ DLGVSS   D  +RGFSF+    
Sbjct: 93  ---PTDSRYHFVATNFRYLGQWLDYWGLTGQVDGILADLGVSSHHFDSEERGFSFRYEEA 149

Query: 133 L-DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           + DMRM+  SG++A D++   + + L  IL   GE   A RIA  +V  R    + T   
Sbjct: 150 MPDMRMNSRSGVTARDILLSYSEEQLADILYYYGELHDARRIAALLVSHRAVG-YPTIAA 208

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L  ++   +        +  +R FQALRI VN+E+  L Q L  + + LK GG + ++S+
Sbjct: 209 LMEVLTPVLPKGGPQLRNKLSRIFQALRIEVNDELGALRQLLSDSVRLLKPGGRIAIISY 268

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDR+VK+FF     +  +        + PA  + +TKK + P+ +++A N R+RSAK
Sbjct: 269 HSLEDRMVKEFFRLGCFEQPSEALAGMPLSAPAPLRVVTKKAITPSADEIADNNRARSAK 328

Query: 311 LRAGMR 316
           LR   R
Sbjct: 329 LRVAER 334


>gi|313886065|ref|ZP_07819803.1| S-adenosyl-methyltransferase MraW [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312924595|gb|EFR35366.1| S-adenosyl-methyltransferase MraW [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 310

 Score =  325 bits (835), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 107/317 (33%), Positives = 161/317 (50%), Gaps = 20/317 (6%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           MS+ ++HT      VL E  + LL   P  + +D T G GG+SR+  +        I LD
Sbjct: 1   MSAKLYHTA-----VLCEDSLDLLVTTPTGLYVDVTMGGGGHSRALLERLAPEGRCIGLD 55

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCG 121
           +DP AV            ++      F  L  ++   G    VDG++ DLGVSS   D  
Sbjct: 56  QDPDAVVNA-----PTDSRYHFVATNFRYLGQWLDYWGLTGQVDGILADLGVSSHHFDSE 110

Query: 122 DRGFSFQKSGPL-DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
           +RGFSF+    + DMRM+  SG++A D++   + + L  IL   GE   A RIA  +V  
Sbjct: 111 ERGFSFRYEEAMPDMRMNSRSGVTARDILLSYSEEQLADILYYYGELHDARRIAALLVSH 170

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
           R    + T   L  ++   +        +  +R FQALRI VN+E+  L Q L  + + L
Sbjct: 171 RAVG-YPTIAALMEVLTPVLPKGGPQLRNKLSRIFQALRIEVNDELGALRQLLSDSVRLL 229

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
           K GG + ++S+HSLEDR+VK+FF     +  +        + PA  + +TKK + P+ ++
Sbjct: 230 KPGGRIAIISYHSLEDRMVKEFFRLGCFEQPSEALAGMPLSAPAPLRVVTKKAITPSADE 289

Query: 300 VAFNRRSRSAKLRAGMR 316
           +A N R+RSAKLR   R
Sbjct: 290 IADNNRARSAKLRVAER 306


>gi|167966821|ref|ZP_02549098.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis
           H37Ra]
 gi|215411891|ref|ZP_03420665.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis
           94_M4241A]
 gi|215427543|ref|ZP_03425462.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis T92]
 gi|215446396|ref|ZP_03433148.1| S-adenosyl-methyltransferase MraW [Mycobacterium tuberculosis T85]
          Length = 331

 Score =  325 bits (835), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 115/318 (36%), Positives = 173/318 (54%), Gaps = 18/318 (5%)

Query: 22  PVLLEKVIALLNPA-----PGK---VILDATFGAGGYSRSFCKMGS--NVIALDRDPFAV 71
           PVL ++   LL PA     P     V+LDAT GAGG++  F +      +I LDRDP A+
Sbjct: 2   PVLAQRCFELLTPALTRYYPDGSQAVLLDATIGAGGHAERFLEGLPGLRLIGLDRDPTAL 61

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSSMQIDCGDRGF 125
              +  +  + ++ +L    +  L   + + G      VDG++FDLGVSSMQ+D  +RGF
Sbjct: 62  DVARSRLVRFADRLTLVHTRYDCLGAALAESGYAAVGSVDGILFDLGVSSMQLDRAERGF 121

Query: 126 SFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           ++    PLDMRM  +  ++A+D+VN  +   L  IL   GEE+ A RIA  IV+RR   P
Sbjct: 122 AYATDAPLDMRMDPTTPLTAADIVNTYDEAALADILRRYGEERFARRIAAGIVRRRAKTP 181

Query: 185 FQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
           F +T +L +L+ + +   ++    HPA R+FQALRI VN+E+E L   + +A  AL  GG
Sbjct: 182 FTSTAELVALLYQAIPAPARRVGGHPAKRTFQALRIAVNDELESLRTAVPAALDALAIGG 241

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            + V+++ SLEDR+VK+ FA            +    H   F+S+T      +  ++  N
Sbjct: 242 RIAVLAYQSLEDRIVKRVFAEAVASATPAGLPVELPGHEPRFRSLTHGAERASVAEIERN 301

Query: 304 RRSRSAKLRAGMRTVERS 321
            RS   +LRA  R   R+
Sbjct: 302 PRSTPVRLRALQRVEHRA 319


>gi|254774999|ref|ZP_05216515.1| S-adenosyl-methyltransferase MraW [Mycobacterium avium subsp. avium
           ATCC 25291]
          Length = 334

 Score =  325 bits (835), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 121/319 (37%), Positives = 180/319 (56%), Gaps = 18/319 (5%)

Query: 20  HVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69
           HVPVLLE+ + LL PA         G V+LDAT GAGG++  F        +IALDRDP 
Sbjct: 10  HVPVLLERCVELLTPALTRRHPDGSGAVLLDATLGAGGHAERFLTDLPGLRLIALDRDPS 69

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSSMQIDCGDR 123
           A+   +E +  + ++ +L    +  +   + + G      VDG++FDLGVSSMQ+D  +R
Sbjct: 70  ALEIARERLARFADRITLVHTRYDGIAAALTESGYAATESVDGILFDLGVSSMQLDRPER 129

Query: 124 GFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GF++ +  PLDMRM   S ++A+D++N  +  +L  IL   GEE+ A RIA  IV+RR  
Sbjct: 130 GFAYAQDAPLDMRMDPGSPLTAADILNTYDEAELADILHRYGEERFARRIAAQIVRRRAK 189

Query: 183 APFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            PF +T DL SL+ + +   ++    HPA R+FQALRI VN+E++ L   L +A  AL  
Sbjct: 190 EPFTSTADLVSLLYQAIPAPARRTGGHPAKRTFQALRIAVNDELDTLRCALPAALDALAV 249

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
            G ++V+++ SLEDR+VK+ FA        V   +    H   F+++T         ++ 
Sbjct: 250 DGRIVVLAYQSLEDRIVKRLFAQAVASRTPVDLPVELPGHEPRFRALTHGAGRADAAEIE 309

Query: 302 FNRRSRSAKLRAGMRTVER 320
            N RS + +LRA  RT   
Sbjct: 310 RNPRSAAVRLRALQRTQAP 328


>gi|171742509|ref|ZP_02918316.1| hypothetical protein BIFDEN_01621 [Bifidobacterium dentium ATCC
           27678]
 gi|283456404|ref|YP_003360968.1| mraW S-adenosyl-methyltransferase mraW [Bifidobacterium dentium
           Bd1]
 gi|306822422|ref|ZP_07455800.1| S-adenosyl-methyltransferase MraW [Bifidobacterium dentium ATCC
           27679]
 gi|309802480|ref|ZP_07696586.1| S-adenosyl-methyltransferase MraW [Bifidobacterium dentium
           JCVIHMP022]
 gi|171278123|gb|EDT45784.1| hypothetical protein BIFDEN_01621 [Bifidobacterium dentium ATCC
           27678]
 gi|283103038|gb|ADB10144.1| mraW S-adenosyl-methyltransferase mraW [Bifidobacterium dentium
           Bd1]
 gi|304553967|gb|EFM41876.1| S-adenosyl-methyltransferase MraW [Bifidobacterium dentium ATCC
           27679]
 gi|308220880|gb|EFO77186.1| S-adenosyl-methyltransferase MraW [Bifidobacterium dentium
           JCVIHMP022]
          Length = 343

 Score =  325 bits (835), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 109/307 (35%), Positives = 161/307 (52%), Gaps = 11/307 (3%)

Query: 20  HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           H PVLL + + L+ P    PG V +D T G  G+S +F K      +I +DRD  A++  
Sbjct: 8   HQPVLLRECVDLVAPALAKPGAVAVDCTLGLAGHSTAFLKASPEARLIGIDRDVEALALA 67

Query: 75  QETMRDYK--EQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK 129
              M      E+F    A F +    + D+    VD V  DLG+SS+QID  +RGFS+  
Sbjct: 68  TRRMEQEGLAERFIPVHAAFDEFAHVLEDRNIDVVDAVFMDLGLSSLQIDETERGFSYSH 127

Query: 130 SGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM     ++A  V+++ +  DL RI    GEE+ + +IA  IV+RR++ P  T+
Sbjct: 128 DAPLDMRMDVTQPLTARQVLSEYSFADLVRIFRTYGEERFSKQIAREIVRRRETEPLTTS 187

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ L+ + V  +     +PA R FQALRI VN E+++LA  L      L  GG L+V 
Sbjct: 188 GQLNRLVDEVVPQAHRPAGNPAKRVFQALRIEVNGELDKLAGTLPQIANHLAVGGRLVVE 247

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           S+HSLED+ VK F A      +     +        F+ +T+  +   + ++A N RS S
Sbjct: 248 SYHSLEDKTVKTFMAQGLKADVPADMPVIPPDMQPFFKELTRGAIKADETEIAMNPRSAS 307

Query: 309 AKLRAGM 315
            +LRA  
Sbjct: 308 VRLRAVE 314


>gi|118464814|ref|YP_881532.1| S-adenosyl-methyltransferase MraW [Mycobacterium avium 104]
 gi|263456513|sp|A0QF44|RSMH_MYCA1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|118166101|gb|ABK66998.1| S-adenosyl-methyltransferase MraW [Mycobacterium avium 104]
          Length = 335

 Score =  325 bits (835), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 121/319 (37%), Positives = 180/319 (56%), Gaps = 18/319 (5%)

Query: 20  HVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69
           HVPVLLE+ + LL PA         G V+LDAT GAGG++  F        +IALDRDP 
Sbjct: 10  HVPVLLERCVELLTPALTRRHPDGSGAVLLDATLGAGGHAERFLTDLPGLRLIALDRDPS 69

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSSMQIDCGDR 123
           A+   +E +  + ++ +L    +  +   + + G      VDG++FDLGVSSMQ+D  +R
Sbjct: 70  ALEIARERLARFADRITLVHTRYDGIAAALTESGYAATESVDGILFDLGVSSMQLDRPER 129

Query: 124 GFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GF++ +  PLDMRM   S ++A+D++N  +  +L  IL   GEE+ A RIA  IV+RR  
Sbjct: 130 GFAYAQDAPLDMRMDPGSPLTAADILNTYDEAELADILHRYGEERFARRIAAQIVRRRAK 189

Query: 183 APFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            PF +T DL SL+ + +   ++    HPA R+FQALRI VN+E++ L   L +A  AL  
Sbjct: 190 EPFTSTADLVSLLYQAIPAPARRTGGHPAKRTFQALRIAVNDELDTLRCALPAALDALAV 249

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
            G ++V+++ SLEDR+VK+ FA        V   +    H   F+++T         ++ 
Sbjct: 250 DGRIVVLAYQSLEDRIVKRLFAQAVASRTPVDLPVELPGHEPRFRALTHGAGRADAAEIE 309

Query: 302 FNRRSRSAKLRAGMRTVER 320
            N RS + +LRA  RT   
Sbjct: 310 RNPRSAAVRLRALQRTQAP 328


>gi|225351427|ref|ZP_03742450.1| hypothetical protein BIFPSEUDO_03022 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157771|gb|EEG71054.1| hypothetical protein BIFPSEUDO_03022 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 343

 Score =  325 bits (835), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 108/307 (35%), Positives = 160/307 (52%), Gaps = 11/307 (3%)

Query: 20  HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           H PVLL   + L+ P    PG + +D T G  G+S +F K      +I +DRD  A+S  
Sbjct: 8   HQPVLLRDCVDLVVPALARPGSIAVDCTLGLAGHSTAFLKASPQARLIGIDRDTEALSLA 67

Query: 75  QETMR--DYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQK 129
            + MR     ++F    A F      + D+G+D    V  DLG+SS+QID  +RGFS+  
Sbjct: 68  TQRMRMEGLADRFIPVHAAFDDFAQVLDDQGIDQVNAVFMDLGLSSLQIDETERGFSYSH 127

Query: 130 SGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM     ++A  ++ + +  DL RI    GEE+ + +IA  IV+RR+  P  T+
Sbjct: 128 DAPLDMRMDVTQPLTAEQILAEYSFADLVRIFRTYGEERFSKQIAREIVRRREIEPLTTS 187

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ L+ + V  +     +PA R FQALRI VN E+++LA  L      L  GG L+V 
Sbjct: 188 GQLNRLVDEVVPQAHRPAGNPAKRVFQALRIEVNGELDKLAGTLPQIANHLAVGGRLVVE 247

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           S+HSLED+ VK F        +     +        F+ +T+  +   +E++A N RS S
Sbjct: 248 SYHSLEDKTVKTFMNQGLKADVPADMPVIPPDMMPFFKELTRGAIKAAEEEIAMNPRSAS 307

Query: 309 AKLRAGM 315
            +LRA  
Sbjct: 308 VRLRAVE 314


>gi|15827426|ref|NP_301689.1| S-adenosyl-methyltransferase MraW [Mycobacterium leprae TN]
 gi|221229903|ref|YP_002503319.1| S-adenosyl-methyltransferase MraW [Mycobacterium leprae Br4923]
 gi|13092976|emb|CAC31287.1| conserved hypothetical protein [Mycobacterium leprae]
 gi|219933010|emb|CAR71001.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
          Length = 372

 Score =  325 bits (835), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 117/321 (36%), Positives = 174/321 (54%), Gaps = 18/321 (5%)

Query: 15  HTIGDHVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKMGS--NVIAL 64
            ++  HVPV  ++ + LL PA           +++DAT G GG++  F        +I L
Sbjct: 37  SSVFGHVPVFAQRCVTLLAPALTRHHADGSNAILVDATLGVGGHAERFLTEFPGLRLIGL 96

Query: 65  DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSSMQI 118
           DRDP A+   +  +  + ++ +L    +  L   +   G      VDGV+FDLGVSSMQ+
Sbjct: 97  DRDPSALDIARTRLMRFADRVTLIHTRYDNLAVALNKFGYAAVESVDGVLFDLGVSSMQL 156

Query: 119 DCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177
           DC +RGFS+ +  PLDMRM   S +SA+D+VN  +   L  IL   GEE+ A RIA  IV
Sbjct: 157 DCAERGFSYAQDVPLDMRMDPWSPVSAADIVNNYDEAALADILRRYGEERFARRIAAHIV 216

Query: 178 KRRQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236
           +RR   PF +T +L +L+ + +   ++    HPA R+FQALRI VN+E+  L+  L +A 
Sbjct: 217 RRRAHTPFTSTAELVALLYQAIPAPARRIGGHPAKRTFQALRIAVNDELNSLSNVLPAAL 276

Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296
            AL   G L+V+++ SLEDR+VK+ FA            I    H   F+ +T+      
Sbjct: 277 DALTVAGRLVVLAYQSLEDRIVKRVFADAVSSRTPAGLPIELPGHGPRFRLLTRGAEHAD 336

Query: 297 QEDVAFNRRSRSAKLRAGMRT 317
             ++  N RS + +LRA  RT
Sbjct: 337 AAEIECNPRSAAVRLRALQRT 357


>gi|261838057|gb|ACX97823.1| hypothetical protein KHP_0616 [Helicobacter pylori 51]
          Length = 308

 Score =  325 bits (835), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 114/311 (36%), Positives = 176/311 (56%), Gaps = 14/311 (4%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70
           +      H  VLL++V+    P    V++D T G GG+S++      +  +I +D+D FA
Sbjct: 1   MQEIENLHQSVLLQEVLQAFAPLEEGVLIDCTLGLGGHSKAILSQKPHLKLIGIDKDKFA 60

Query: 71  VSCGQETMRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSF 127
               +E ++ ++ +++L    F++  ++ +      + GV+ DLGVSS+Q+D  +RGF+F
Sbjct: 61  QEIAKERLKAFEGRYNLLSGGFAKRFKEALETHNKEIKGVLVDLGVSSLQLDDDNRGFNF 120

Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
             S  LDMRM   SG++A  V+N  +V  L +I    GE K+  +IAH I +RR   PF+
Sbjct: 121 -HSHALDMRMDLESGLNAQKVINSYSVVALEKIFRDYGEIKEYKKIAHKITERRAKKPFK 179

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
             +DLS  +     FSKN +IHPAT  FQA+RI VN E+EEL + L+ A      G +L 
Sbjct: 180 DAKDLSDFLSS---FSKNKKIHPATLVFQAVRIEVNRELEELKEFLQCARNL--KGAILC 234

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           V+SFHSLED LVK  F   +   +          + + A+ + +TKK + P+ E++  NR
Sbjct: 235 VISFHSLEDALVKNAFKDYAKNCICNPLSFKCTCSNNHALGEILTKKPITPSPEEIKNNR 294

Query: 305 RSRSAKLRAGM 315
           RSRSAK+R   
Sbjct: 295 RSRSAKMRVFQ 305


>gi|56707815|ref|YP_169711.1| S-adenosyl-methyltransferase MraW [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670286|ref|YP_666843.1| S-adenosyl-methyltransferase [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224456886|ref|ZP_03665359.1| S-adenosyl-methyltransferase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254370311|ref|ZP_04986316.1| S-adenosyl-methyltransferase [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254874629|ref|ZP_05247339.1| S-adenosyl-methyltransferase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|68565439|sp|Q5NGY1|RSMH_FRATT RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|123169471|sp|Q14ID3|RSMH_FRAT1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|56604307|emb|CAG45328.1| S-adenosyl-methyltransferase [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110320619|emb|CAL08711.1| S-adenosyl-methyltransferase [Francisella tularensis subsp.
           tularensis FSC198]
 gi|151568554|gb|EDN34208.1| S-adenosyl-methyltransferase [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840628|gb|EET19064.1| S-adenosyl-methyltransferase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282158991|gb|ADA78382.1| S-adenosyl-methyltransferase [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 305

 Score =  325 bits (834), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 117/309 (37%), Positives = 177/309 (57%), Gaps = 16/309 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76
            H  VLL++ I  LN  P  + +DATFG GG+S++         +IA D+D  A+S  +E
Sbjct: 1   MHYSVLLQESINDLNINPQGIYIDATFGRGGHSKAILNRLTTGRLIAFDKDLDAISYARE 60

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +     F +  A+F+ + DY         +DG++ DLGVSS Q+D   RGFSF  +GP
Sbjct: 61  NFQF--SNFEIVHASFASIYDYCLQHSLLGKIDGIIMDLGVSSPQLDNAARGFSFTHNGP 118

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTTQD 190
           LDMRM  S GI+AS  + + +V DL+ I  + GEE+ A +IA  I    +Q+   + T +
Sbjct: 119 LDMRMDVSKGITASQALEELSVDDLSYIFKVYGEERFAKKIALRIKDYIQQNGSIRKTLE 178

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ LI  T+   K  + +PATR FQALRI+VNNE+++L   L +    +K+GG +  +SF
Sbjct: 179 LAELILATI--GKKEKKNPATRCFQALRIYVNNELKDLEALLENILAVIKSGGRIAAISF 236

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH---MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           HSLEDR+VK+ F++       +     M+P ++     + ITKK     ++++  N RSR
Sbjct: 237 HSLEDRIVKQKFSALINPKQELNRITKMLPQDSSQIKLKWITKKS-KANEDELNQNVRSR 295

Query: 308 SAKLRAGMR 316
           SA LR   +
Sbjct: 296 SAILRVVEK 304


>gi|325962941|ref|YP_004240847.1| S-adenosyl-methyltransferase MraW [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323469028|gb|ADX72713.1| S-adenosyl-methyltransferase MraW [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 330

 Score =  325 bits (834), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 114/311 (36%), Positives = 169/311 (54%), Gaps = 15/311 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKMGS- 59
           M      T   HVPVL ++ I LL P            V +DAT G GG+S +  +    
Sbjct: 1   MDEHQKPTSERHVPVLRDRCINLLAPGFEAARLRGETPVAIDATLGMGGHSEAMLQRFPD 60

Query: 60  -NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSS 115
            ++I +DRD  A++   E +  +  +  L  A + ++ D + D GV    G++ DLGVSS
Sbjct: 61  LHLIGIDRDEEALALAGERLAPFAARTDLVHAVYDEIPDVLADLGVSEVHGILMDLGVSS 120

Query: 116 MQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAH 174
           +Q+D  +RGF++    PLDMRM  S G +A+DVVN  + ++L RI+   GEEK A RIA+
Sbjct: 121 LQLDERERGFAYSFDAPLDMRMDTSRGQTAADVVNTYSEEELVRIIRKWGEEKFAGRIAN 180

Query: 175 AIVKRRQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEELAQGLR 233
            IV  R   PF TT +L   I+  V   +     HPA R+FQALRI VN E++ L + + 
Sbjct: 181 RIVAARAVKPFSTTGELVEQIRSVVPASAAKTGGHPAKRTFQALRIEVNEELDVLERAVP 240

Query: 234 SAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV 293
           +A  +L  GG ++V+S+HSLED++VK     RS     +   +    H    +++TK   
Sbjct: 241 AAVDSLAMGGRIVVMSYHSLEDKIVKGVLQGRSKSSAPLGFPVELEEHKPELKTLTKGTE 300

Query: 294 VPTQEDVAFNR 304
           VPT  ++A N 
Sbjct: 301 VPTAVEIAENP 311


>gi|289826154|ref|ZP_06545266.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
          Length = 279

 Score =  325 bits (834), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 109/271 (40%), Positives = 161/271 (59%), Gaps = 12/271 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++  Q
Sbjct: 6   KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAQ 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +FS+    FS L DYV ++     +DG++ DLGVSS Q+D  +RGFSF + G
Sbjct: 66  TI---NDPRFSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFMRDG 122

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + G SA++ +  A   D+  +L   GEE+ A RIAHAIV+R +  P   T++
Sbjct: 123 PLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIAHAIVERNREQPMTRTKE 182

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L +GG L ++SF
Sbjct: 183 LAEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLASGGRLSIISF 241

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAH 281
           HSLEDR+VK+F   +S        +  + A 
Sbjct: 242 HSLEDRIVKRFMREQSRGPQVPAGLPMTEAQ 272


>gi|268680046|ref|YP_003304477.1| S-adenosyl-methyltransferase MraW [Sulfurospirillum deleyianum DSM
           6946]
 gi|268618077|gb|ACZ12442.1| S-adenosyl-methyltransferase MraW [Sulfurospirillum deleyianum DSM
           6946]
          Length = 304

 Score =  325 bits (834), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 100/301 (33%), Positives = 162/301 (53%), Gaps = 9/301 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76
            H+PVLLE+V A  +     VI+D T G GG+S +  +   +  +I  D+D  A++  ++
Sbjct: 4   PHIPVLLEEVKAAFSNISDGVIIDCTLGYGGHSEALLEQNPHIRLIGCDQDEEALAFSKK 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
            +  + E+       F+ +        + G++ D+GVSS+Q+D  +RGF+F     LDMR
Sbjct: 64  RLERFGERVMFHHGNFASVIAQYAHLPIRGILADIGVSSLQLDKKERGFAFDSEV-LDMR 122

Query: 137 MSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M+    +SA +VVN    + L  I    GE     ++A  + + R  AP Q+ ++L S +
Sbjct: 123 MNPHQSLSAYEVVNHYTKEQLEFIFREYGEIHAYQKMAQLMCEARLKAPIQSAKEL-SFL 181

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
            + +   K+  IHPAT  FQA+RI VNNE+  L Q L S + A     ++ ++SFHSLED
Sbjct: 182 AQKIPGKKS--IHPATLLFQAIRIEVNNELGVLTQLLESIQNAGFTQCIVGIISFHSLED 239

Query: 256 RLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           R+VK+ F   S   +   H+       + A+ + I+KK +  +  ++  N RSRSA+LR 
Sbjct: 240 RIVKQTFKFWSQNCICPPHVMRCMCGNNHALGKIISKKPIEASPLELKKNPRSRSARLRV 299

Query: 314 G 314
            
Sbjct: 300 F 300


>gi|292616071|ref|XP_689063.3| PREDICTED: probable S-adenosyl-L-methionine-dependent
           methyltransferase METT5D1-like isoform 2 [Danio rerio]
 gi|292616073|ref|XP_002662882.1| PREDICTED: probable S-adenosyl-L-methionine-dependent
           methyltransferase METT5D1-like [Danio rerio]
          Length = 402

 Score =  325 bits (833), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 125/335 (37%), Positives = 180/335 (53%), Gaps = 38/335 (11%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77
           H PV++++V+  LN  PG+++LD TFGAGG+S++  +   G  V+A DRDP A    Q+ 
Sbjct: 67  HTPVMVKEVLQFLNIKPGQIVLDLTFGAGGHSKAILQSVPGVTVVAADRDPTAFRMAQQL 126

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKG-----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +Y+ +       FS+L + +P  G     VD  + D G SSMQ+D  +RGFS  K GP
Sbjct: 127 AEEYQGKVKPVLGRFSELNNLLPALGLGPGTVDAALLDAGCSSMQMDSAERGFSLSKDGP 186

Query: 133 LDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           LDMRM          A+DVVN  + + L  +L   GEE+   +IA AI + R   P   T
Sbjct: 187 LDMRMDGDRYPDMPCAADVVNALDQQALASVLAAYGEERHTRKIAAAIAQARSVYPIGRT 246

Query: 189 QDLSSLIQKTVYF----SKNNRI----HPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
             L+S++          ++ +R+    H AT++FQALRIFVN+E+ EL  GLR A+  L+
Sbjct: 247 LQLASIVAGAFPASALYARRDRLQRPSHVATKTFQALRIFVNDELNELHAGLRVAQTLLR 306

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSIT---------- 289
             G L V++FHSLEDRL K+F           R +   + A PA  +             
Sbjct: 307 PKGRLCVLTFHSLEDRLTKRFLRGEDLAAPPRRSLRQHARARPAGQEEEFEEEEEGDEGG 366

Query: 290 --------KKVVVPTQEDVAFNRRSRSAKLRAGMR 316
                   KKV+ P++E+V  N R+RSAKLR  +R
Sbjct: 367 NSVHWVSLKKVIKPSEEEVQENPRARSAKLRTAVR 401


>gi|326440704|ref|ZP_08215438.1| 16S rRNA m(4)C1402 methyltranserfase [Streptomyces clavuligerus
           ATCC 27064]
          Length = 309

 Score =  325 bits (833), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 123/306 (40%), Positives = 178/306 (58%), Gaps = 10/306 (3%)

Query: 24  LLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETM 78
           +L++ + LL PA   PG V++D T G GG+S +         +IALDRDP A+    E +
Sbjct: 1   MLQRCLDLLAPALESPGAVVVDCTLGLGGHSEALLSRFPGVRLIALDRDPEALRLSAERL 60

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
             Y E+ +L  A + +L   +   GV    GV+FDLGVSSMQ+D  DRGF++ +  PLDM
Sbjct: 61  APYGERATLVHAVYDELPAVLARLGVPRVQGVLFDLGVSSMQLDEADRGFAYAQDAPLDM 120

Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM  + G+SA++V+N     +L RIL   GEEKQA RI  AIV+ R + PF T+  L  L
Sbjct: 121 RMDQTTGMSAAEVLNTYPPGELVRILRAYGEEKQAKRIVSAIVRERVNEPFSTSARLVEL 180

Query: 195 IQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           I+  +   +K    +PA R+FQALRI VN E+  L + + +A  AL   G + V+S+HSL
Sbjct: 181 IRDALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAVPAAVAALAVEGRIAVLSYHSL 240

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           EDRLVK+ FA+ +         +    +    + +T+   +PT ++VA NRR+  A+LR 
Sbjct: 241 EDRLVKQVFAAGAATTAPPGLPVVPEEYQPRLRLLTRGAELPTDDEVAENRRAAPARLRG 300

Query: 314 GMRTVE 319
             R  E
Sbjct: 301 AQRIRE 306


>gi|150021597|ref|YP_001306951.1| S-adenosyl-methyltransferase MraW [Thermosipho melanesiensis BI429]
 gi|262825837|sp|A6LNR5|RSMH_THEM4 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|149794118|gb|ABR31566.1| S-adenosyl-methyltransferase MraW [Thermosipho melanesiensis BI429]
          Length = 291

 Score =  325 bits (833), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 108/307 (35%), Positives = 164/307 (53%), Gaps = 30/307 (9%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76
            H+PVL  +V+  L      + +D T G GG++    K    S VIA+D D   +   Q+
Sbjct: 7   KHIPVLPNEVVEYLLWKDNGIYVDCTAGEGGHTFLIAKKCPNSRVIAIDVDLEVLEIAQK 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++ +     L +A++  L   +   G   V G++ DLG+S+ Q+    RGFSF +  PL
Sbjct: 67  NLKAF-HNVILLKASYVDLPVVLKSLGIERVSGILADLGISTYQLKAEGRGFSFNRDEPL 125

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM      SA  + N  + + L++I+   GEE+ A RIA  IVK R   P  TT++L 
Sbjct: 126 DMRMDIQQDTSAHKITNFYSEEKLSKIIFKYGEERFARRIAKQIVKNR---PINTTKELV 182

Query: 193 SLIQKTVYFS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
            +I+K +  S  +  + H AT++FQA+RI VN E++ + Q L++AE+ L+ GG L ++SF
Sbjct: 183 EIIKKALPPSEIRKRKRHFATKTFQAIRIEVNKELKNIEQLLKNAEELLEIGGRLAIISF 242

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDR+VK F  + +                   + I    + PTQE+   N R+RSAK
Sbjct: 243 HSLEDRIVKHFIKNSNN-----------------LKHIA-GPIKPTQEETKNNPRARSAK 284

Query: 311 LRAGMRT 317
           LR   R 
Sbjct: 285 LRVAERI 291


>gi|311742808|ref|ZP_07716616.1| S-adenosyl-methyltransferase MraW [Aeromicrobium marinum DSM 15272]
 gi|311313488|gb|EFQ83397.1| S-adenosyl-methyltransferase MraW [Aeromicrobium marinum DSM 15272]
          Length = 325

 Score =  325 bits (833), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 117/317 (36%), Positives = 184/317 (58%), Gaps = 12/317 (3%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVIL-----DATFGAGGYSRSFCKMGSNV--IALDRD 67
           HT   HVPV L++V+ LL PA           D T G GG++ +  +   ++  + +DRD
Sbjct: 9   HTRPSHVPVALDRVLDLLAPAVEAAGEAAVVVDTTLGLGGHTAAMLQRFPDLRVVGIDRD 68

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRG 124
           P A+    E + D   + +L  A + ++ D + + GV   DGV+FDLGVSSMQ+D G+RG
Sbjct: 69  PDALRLAAERLADVAGRVTLVHAVYDRIADALDEAGVERVDGVLFDLGVSSMQLDVGERG 128

Query: 125 FSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           F++ +  PLDMRM  + GI+A++V+N     DL R+L   GEEK A RIA A+V  R   
Sbjct: 129 FAYAQDAPLDMRMDPTTGITAAEVLNTYAAGDLARVLRTYGEEKFARRIADAVVAERDEH 188

Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           PF T+  L  L+++++  + +    +PA R+FQALRI VN+E+    + L +A  AL+ G
Sbjct: 189 PFDTSPRLVDLVRRSIPAAARRTGGNPAKRTFQALRIEVNDELGAYERALPAALSALRPG 248

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G ++V+++HSLEDR+ K+ FA  +   +          H A F+S+T+   + +  ++  
Sbjct: 249 GRVVVLAYHSLEDRITKRTFARITTTQVPRDLPFVPAGHAAEFRSLTRGAELASPAEIDE 308

Query: 303 NRRSRSAKLRAGMRTVE 319
           N R++S +LRA  R   
Sbjct: 309 NPRAQSVRLRAVERIAA 325


>gi|119358493|ref|YP_913137.1| S-adenosyl-methyltransferase MraW [Chlorobium phaeobacteroides DSM
           266]
 gi|263446010|sp|A1BJY6|RSMH_CHLPD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|119355842|gb|ABL66713.1| S-adenosyl-methyltransferase MraW [Chlorobium phaeobacteroides DSM
           266]
          Length = 329

 Score =  325 bits (833), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 104/314 (33%), Positives = 158/314 (50%), Gaps = 19/314 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--------VIALDRDPFAV 71
           H PVL  +V   L   P  + +D T G GG++ +  +            +I +D+D  A+
Sbjct: 7   HEPVLAAQVTDFLVLRP-GIYIDGTLGGGGHALAIMRALETAGFEKNSLLIGIDQDDEAL 65

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDK--------GVDGVVFDLGVSSMQIDCGDR 123
                T+  YKE   L +  FS ++  +              G++ DLGVSS QID   R
Sbjct: 66  HAASTTLSWYKETTVLVKGNFSDVRSILGKVCKQRGLVSRAAGILLDLGVSSSQIDTAGR 125

Query: 124 GFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GFS+ + GPLDMRM  CS  +A+D+VN  + K+L  +    GEE ++  IA  IV  R+ 
Sbjct: 126 GFSYLQKGPLDMRMDRCSSTTAADIVNTLDEKELAGLFFRYGEEPRSRMIARHIVNYREQ 185

Query: 183 APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
               T  ++ + I +      + +I   +R FQALRI VN E+E L Q L      L   
Sbjct: 186 TGAVTGTEVLAAIIRNAERDPHKQIKTLSRVFQALRIEVNQELEVLKQALSDGVDCLDYH 245

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDVA 301
           G + V+S+HSLEDR+VK FF  +S      + + +    H  V   +T+K ++  ++++ 
Sbjct: 246 GRMAVISYHSLEDRIVKSFFVEKSKSDWGPKGVGMREPLHKGVLGLVTRKPLIADEKEIQ 305

Query: 302 FNRRSRSAKLRAGM 315
            N R+RSAKLR   
Sbjct: 306 ENPRARSAKLRVVE 319


>gi|314929325|gb|EFS93156.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL044PA1]
          Length = 337

 Score =  325 bits (833), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 112/321 (34%), Positives = 173/321 (53%), Gaps = 11/321 (3%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPG---KVILDATFGAGGYSRSFCKMGSN--VIA 63
           M++    +   HVPV+  +++ LL P      +V +D T G GG++ +      +  ++ 
Sbjct: 3   MATDAIGSDAVHVPVMRARILDLLGPTLESGRRVHVDGTLGMGGHAEAVLTRFPDVQLVG 62

Query: 64  LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDC 120
           +DRD  A++     ++ + ++  L  A   +L + + D G   VD V+ DLG+SS+QID 
Sbjct: 63  IDRDQQALTMAGARLKPFVDRVHLVHAVHDELPEVLDDLGLGRVDSVLLDLGLSSLQIDE 122

Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS+    PLDMRM  S G +A+ V+N+++  DL RIL   GEEK A RI  AIV  
Sbjct: 123 VNRGFSYSVDSPLDMRMDQSRGRTAAQVLNESDPGDLVRILHEYGEEKFADRIVRAIVTE 182

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSKNNR--IHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
           R   P +T+  L  +I + +  +  ++   HPA R+FQALRI VN E+E L+  L  A  
Sbjct: 183 RDRQPIETSGRLVEIITRAIPVAVRHKRSGHPAKRTFQALRIAVNREMETLSAVLPRALD 242

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297
            L  GG + V+++HSLEDR VK+ F             I   +  A F  +T+    P  
Sbjct: 243 RLNVGGRIAVLAYHSLEDRPVKEVFREACDDTAPAGLPIVPESMAAKFSPVTRGAERPDA 302

Query: 298 EDVAFNRRSRSAKLRAGMRTV 318
           ++++ N RS SA+LR   R  
Sbjct: 303 DEMSANPRSASARLRVIERVR 323


>gi|145220562|ref|YP_001131271.1| S-adenosyl-methyltransferase MraW [Prosthecochloris vibrioformis
           DSM 265]
 gi|262824996|sp|A4SH10|RSMH_PROVI RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|145206726|gb|ABP37769.1| S-adenosyl-methyltransferase MraW [Chlorobium phaeovibrioides DSM
           265]
          Length = 327

 Score =  324 bits (832), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 111/320 (34%), Positives = 166/320 (51%), Gaps = 21/320 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC--------KMGSNVIALDRDPFAV 71
           H PVL  + +++L   P  + LD T G GG+S +            GS ++ +D+D  A+
Sbjct: 9   HEPVLAPESVSMLVRGP-GLYLDGTLGGGGHSLAILCELERSGWLEGSLLLGIDQDDEAL 67

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVP--------DKGVDGVVFDLGVSSMQIDCGDR 123
               E + DY+E     +  F  +             +    G++ DLGVSS Q+D   R
Sbjct: 68  QEAGERLADYREHAVALKGNFGNIAALSAREAGSRGMEPQASGILLDLGVSSHQLDVPLR 127

Query: 124 GFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR-Q 181
           GFS+ + GPLDMRM      +A+D++N A   +L  I    GEE  +  IA A+  RR +
Sbjct: 128 GFSYMQPGPLDMRMDSGATGTAADILNTAPEAELASIFFRYGEEPLSRVIARAVTTRRVE 187

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
             PF TT +L+ L++  V F +   +   +R FQALRI VN E+E L + L      LK 
Sbjct: 188 KGPFHTTDELADLVRSVV-FGRERVMKSLSRVFQALRIAVNQELEVLERVLGDGVMLLKP 246

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDV 300
           GG + V+S+HSLEDR+VK+FF+S +      + + +     PA   ++T K V    E+V
Sbjct: 247 GGRMAVISYHSLEDRMVKRFFSSLTTADWGPKGVGLREPVRPAAAIAVTGKPVRAGAEEV 306

Query: 301 AFNRRSRSAKLRAGMRTVER 320
           A N R+RSAK+R   +   R
Sbjct: 307 ARNPRARSAKMRVIEKMENR 326


>gi|83748758|ref|ZP_00945773.1| S-adenosyl-methyltransferase mraW [Ralstonia solanacearum UW551]
 gi|207721512|ref|YP_002251952.1| s-adenosyl-methyltransferase mraw protein [Ralstonia solanacearum
           MolK2]
 gi|207744409|ref|YP_002260801.1| s-adenosyl-methyltransferase mraw protein [Ralstonia solanacearum
           IPO1609]
 gi|83724579|gb|EAP71742.1| S-adenosyl-methyltransferase mraW [Ralstonia solanacearum UW551]
 gi|206586672|emb|CAQ17258.1| s-adenosyl-methyltransferase mraw protein [Ralstonia solanacearum
           MolK2]
 gi|206595814|emb|CAQ62741.1| s-adenosyl-methyltransferase mraw protein [Ralstonia solanacearum
           IPO1609]
          Length = 319

 Score =  324 bits (832), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 112/314 (35%), Positives = 175/314 (55%), Gaps = 23/314 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VL ++ +  L      + +D TFG GG+SR   +    G  +IA D+DP A++    
Sbjct: 11  HQTVLRDEAVDALLWRDDGIYIDGTFGRGGHSRLILERLGPGGRLIAFDKDPAAITEAG- 69

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +F++   +F+ L   +  +G   V GV+ DLG+SS QID G RGFSF+  GPL
Sbjct: 70  --TVEDARFAIEHDSFAHLDAALDARGIGRVAGVLLDLGISSPQIDEGARGFSFRMDGPL 127

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS----APFQTT 188
           DMRM  + GI+A+  + +A+ +D+ R++   GEE+ A +IA AIV RR       P   T
Sbjct: 128 DMRMDTTRGITAAQWLAEADERDIARVIRDYGEERFAVQIAKAIVARRSESGTRGPLDRT 187

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L++L+ + V   +     PATR+FQALRI VN E+ +L  GL++A + L+ GG L+V+
Sbjct: 188 SELAALVAQAVKT-REKGQDPATRTFQALRIHVNQELADLETGLKAAFERLEQGGRLVVI 246

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPS------NAHPAVFQSITKKVVVPTQEDVAF 302
           SFHSLEDR+VK+F  + +    +    +               + + +  V P++ +V+ 
Sbjct: 247 SFHSLEDRIVKRFMQALARPEQSAAPEMRRAPLRAHELPAPQLRLLGR--VRPSEAEVSA 304

Query: 303 NRRSRSAKLRAGMR 316
           N R+RSA +R   R
Sbjct: 305 NPRARSAIMRVAER 318


>gi|317010927|gb|ADU84674.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori
           SouthAfrica7]
          Length = 308

 Score =  324 bits (832), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 114/304 (37%), Positives = 177/304 (58%), Gaps = 14/304 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           H  VLL++V+ +  P    V++D T G GG+S++      ++  I +D+D  A    +E 
Sbjct: 8   HQSVLLQEVLQVFAPLEKGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKHAQEIAKER 67

Query: 78  MRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++ ++E++ +    F++  ++ +   G  + GV+ DLGVSS+Q+D  DRGF+F  S  LD
Sbjct: 68  LKTFEERYHILSGGFAKRFKEALETHGEQIKGVLVDLGVSSLQLDDDDRGFNF-HSPTLD 126

Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM   S ++A  V+N  +V  L +I    GE K+  +IAH IV+RR   PF+  +DLS 
Sbjct: 127 MRMDLESELNAQKVINSYSVVALEKIFKDYGEIKEYKKIAHHIVERRAKKPFKDAKDLSD 186

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
            +      SKN +IHPAT  FQA+RI VN+E+EEL + L+ A      G +L V+SFHSL
Sbjct: 187 FLSS---LSKNKKIHPATLVFQAIRIEVNHELEELKEFLQDARNL--KGAILCVISFHSL 241

Query: 254 EDRLVKKFFASRSGKVMA--VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           ED LVK  F   +   +   +      + + A+ + +TKK + P+ E++  NRRSRSAK+
Sbjct: 242 EDALVKNAFKDYAKNCICDALSFKCTCSNNHALGEILTKKPITPSPEEIKRNRRSRSAKM 301

Query: 312 RAGM 315
           R   
Sbjct: 302 RVFQ 305


>gi|54023726|ref|YP_117968.1| S-adenosyl-methyltransferase MraW [Nocardia farcinica IFM 10152]
 gi|115311586|sp|Q5YYY7|RSMH_NOCFA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|54015234|dbj|BAD56604.1| putative methyltransferase [Nocardia farcinica IFM 10152]
          Length = 324

 Score =  324 bits (832), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 115/317 (36%), Positives = 176/317 (55%), Gaps = 13/317 (4%)

Query: 18  GDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVS 72
             HVPVLLE+   LL PA   PG V +DAT G GG++  F        ++ LDRD  A+ 
Sbjct: 8   ARHVPVLLERADELLGPALTEPGAVYVDATLGLGGHAEHFLTRYPGLRLVGLDRDTEALR 67

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSSMQIDCGDRGFS 126
              E +  + E+ +L    +  + D +   G      V  ++ DLGVSSMQ+D  +RGF+
Sbjct: 68  LAGERLAPFAERITLVHTRYDGIADALGQAGLPPTGSVSAILMDLGVSSMQLDEAERGFA 127

Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           +    PLDMRM   SGI+A+DV+N  +  DL R+L   GEE+ A +IA  +++RR   PF
Sbjct: 128 YSVDAPLDMRMDPTSGITAADVLNTYSHGDLARVLKNYGEERFAGKIASEVIRRRAHKPF 187

Query: 186 QTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           +T+ +L  L+  T+  + +    HPA R+FQALR+ VN E++ L   L +A  AL+ GG 
Sbjct: 188 ETSGELVELLYATIPAAARRTGGHPAKRTFQALRVEVNGELDSLRAALPAALDALRVGGR 247

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           ++V+S+ SLEDR+VK+  A+R+     V   +        F+ +T+      + ++A N 
Sbjct: 248 IVVMSYQSLEDRVVKQELAARTSSRTPVDLPVELPGMGPEFRLLTRGAEKAGEREIAENP 307

Query: 305 RSRSAKLRAGMRTVERS 321
           R+   ++RA  R    S
Sbjct: 308 RAAPVRMRAAERIEAAS 324


>gi|328906989|gb|EGG26755.1| S-adenosyl-methyltransferase MraW [Propionibacterium sp. P08]
          Length = 346

 Score =  324 bits (832), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 112/321 (34%), Positives = 173/321 (53%), Gaps = 11/321 (3%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPG---KVILDATFGAGGYSRSFCKMGSN--VIA 63
           M++    +   HVPV+  +++ LL P      +V +D T G GG++ +      +  ++ 
Sbjct: 12  MATDAIGSDAVHVPVMRARILDLLGPTLESGRRVHVDGTLGMGGHAEAVLTRFPDVQLVG 71

Query: 64  LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDC 120
           +DRD  A++     ++ + ++  L  A   +L + + D G   VD V+ DLG+SS+QID 
Sbjct: 72  IDRDQQALTMAGARLKPFVDRVHLVHAVHDELPEVLDDLGLGRVDSVLLDLGLSSLQIDE 131

Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS+    PLDMRM  S G +A+ V+N+++  DL RIL   GEEK A RI  AIV  
Sbjct: 132 VNRGFSYSVDSPLDMRMDQSRGRTAAQVLNESDPGDLVRILHEYGEEKFADRIVRAIVTE 191

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSKNNR--IHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
           R   P +T+  L  +I + +  +  ++   HPA R+FQALRI VN E+E L+  L  A  
Sbjct: 192 RDRQPIETSGRLVEIITRAIPVAVRHKRSGHPAKRTFQALRIAVNREMETLSAVLPRALD 251

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297
            L  GG + V+++HSLEDR VK+ F             I   +  A F  +T+    P  
Sbjct: 252 RLNVGGRIAVLAYHSLEDRPVKEVFREACDDTAPAGLPIVPESMAAKFSPVTRGAERPDA 311

Query: 298 EDVAFNRRSRSAKLRAGMRTV 318
           ++++ N RS SA+LR   R  
Sbjct: 312 DEMSANPRSASARLRVIERVR 332


>gi|261839470|gb|ACX99235.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori 52]
          Length = 302

 Score =  324 bits (832), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 113/305 (37%), Positives = 173/305 (56%), Gaps = 14/305 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76
            H  VLL++V+    P    V++D T G GG+S++      +  +I +D+D FA    +E
Sbjct: 1   MHQSVLLQEVLQAFAPLEEGVLIDCTLGLGGHSKAILSQKPHLKLIGIDKDKFAQEIAKE 60

Query: 77  TMRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++ ++ +++L    F++  ++ +   G  + GV+ DLGVSS+Q+D  +RGF+F  S  L
Sbjct: 61  RLKAFEGRYNLLSGGFAKRFKEALETHGKEIKGVLVDLGVSSLQLDDDNRGFNF-HSHAL 119

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM   G ++A  V+N   V  L +I    GE K+  +IAH I +RR   PF+  +DLS
Sbjct: 120 DMRMDLEGDLNAQKVINSYPVVALEKIFKDYGEIKEYKKIAHKIAERRAKKPFKDAKDLS 179

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
             +      SKN +IHPAT  FQA+RI VN E+EEL + L+ A      G +L V+SFHS
Sbjct: 180 DFLSS---LSKNKKIHPATLVFQAVRIEVNRELEELKEFLQCARNL--KGAILCVISFHS 234

Query: 253 LEDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           LED LVK  F   +   +          + + A+ + +TKK + P+ E++  NRRSRSAK
Sbjct: 235 LEDSLVKNAFKDYAKNCICDPLSFKCTCSNNHALGEILTKKPITPSPEEIKNNRRSRSAK 294

Query: 311 LRAGM 315
           +R   
Sbjct: 295 MRVFQ 299


>gi|222100677|ref|YP_002535245.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Thermotoga neapolitana DSM 4359]
 gi|262825854|sp|B9KA96|RSMH_THENN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|221573067|gb|ACM23879.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Thermotoga neapolitana DSM 4359]
          Length = 300

 Score =  324 bits (832), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 118/310 (38%), Positives = 181/310 (58%), Gaps = 30/310 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77
           H+PV++ +VI  L P   K+ILD T G GG++R+  +   G  +I +D D   +   ++ 
Sbjct: 8   HIPVMVREVIEYLKPEDEKIILDCTVGEGGHARAILEHCPGCKLIGIDVDSEVLQIAEKK 67

Query: 78  MRDYKEQFSLFQATFSQ---LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++D+ ++ SLF+A++     L   +  + VDG++ DLGVS+ Q+   +RGF+F++  PLD
Sbjct: 68  LKDFSDRVSLFKASYRDADFLLKTLEIEKVDGILLDLGVSTYQLKGENRGFTFEREEPLD 127

Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEK-QASRIAHAIVKRRQSAPFQTTQDLS 192
           MRM   S I+A  V+N+ + ++L RI+   GEEK  A RIA  IV+ R   P  TT DL 
Sbjct: 128 MRMDLESEITAQKVLNELSEEELARIIFEYGEEKRYARRIARKIVENR---PLNTTLDLV 184

Query: 193 SLIQKTVYFS--KNNRIHPATRSFQALRIFVNNEIEEL-AQGLRSAEKALKAGGLLIVVS 249
             + + +     +  + H ATR+FQA+RI+VN E+E L    L  AEK L+ GG ++V+S
Sbjct: 185 KAVSEALPSHEIRRRKRHFATRTFQAIRIYVNRELENLREFLLNKAEKLLRVGGRIVVIS 244

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDR+VK+ F +                     + +T+K V P++E+V  N RSRSA
Sbjct: 245 FHSLEDRIVKEAFRNS-----------------RKLRILTEKPVRPSEEEVRENPRSRSA 287

Query: 310 KLRAGMRTVE 319
           +LRA     E
Sbjct: 288 RLRAAELVEE 297


>gi|260063719|ref|YP_003196799.1| S-adenosyl-methyltransferase MraW [Robiginitalea biformata
           HTCC2501]
 gi|88783164|gb|EAR14337.1| S-adenosyl-methyltransferase MraW [Robiginitalea biformata
           HTCC2501]
          Length = 312

 Score =  324 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 105/309 (33%), Positives = 159/309 (51%), Gaps = 17/309 (5%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVS 72
            +  H PVLL + +  L        +D TFG GG+SR           +IA D+D  A++
Sbjct: 3   EMKYHKPVLLRESVDGLAIREDGTYVDVTFGGGGHSREILGRLGPKGRLIAFDQDEEALA 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK 129
                 +   E+F L    F  ++ ++   G   VDG++ D GVSS Q D  +RGFS + 
Sbjct: 63  N-----KPEDERFLLIGENFRYIRQFLKFYGILKVDGILADFGVSSHQFDRAERGFSTRF 117

Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
              LDMRMS  + I+A DVVN  + + L  +L   GE + A +IA  +V+ R  A  QTT
Sbjct: 118 DAGLDMRMSRRAEITARDVVNTYSFEKLRSVLQRYGELRSAGKIAGELVRARDKASIQTT 177

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+  +   +   K N++    R +QA+R+ VN E+  L   L+     L  GG L ++
Sbjct: 178 YGLNEAVSAFLPRGKENKV--LARIYQAIRMEVNQELAALEAFLQQTAALLPTGGRLSLI 235

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           S+HSLEDRLVK+F  +   +    +    +   P  F+ +  K++VP  +++  N R+RS
Sbjct: 236 SYHSLEDRLVKRFIRTGKFEGEVDKDFYGNPLAP--FRKV-GKLIVPGDDELEENPRARS 292

Query: 309 AKLRAGMRT 317
           AKLR   RT
Sbjct: 293 AKLRIAERT 301


>gi|225872742|ref|YP_002754199.1| S-adenosyl-methyltransferase MraW [Acidobacterium capsulatum ATCC
           51196]
 gi|263433378|sp|C1F466|RSMH_ACIC5 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|225792322|gb|ACO32412.1| S-adenosyl-methyltransferase MraW [Acidobacterium capsulatum ATCC
           51196]
          Length = 297

 Score =  324 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 118/308 (38%), Positives = 171/308 (55%), Gaps = 28/308 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HVPVLL+  I  LN   G    DAT G  G+S +  ++   G  +IA DRDP A+   + 
Sbjct: 6   HVPVLLQDAIRYLNVRRGGTYADATLGLAGHSSAIARLLGPGGTLIAFDRDPEAMELAKS 65

Query: 77  TMRDYK-------EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
            +   +        +  L    FS+ +D +    +DG++ D GVSS+Q D   RGFSFQ 
Sbjct: 66  RLDALRAELGSEMPKVILHSTEFSEAEDLIEPGSLDGLLADFGVSSLQFDEAHRGFSFQA 125

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM+   G++A+ VVNQ   K+L  ++   GEE+++ RIA AIV+ R   P  TT
Sbjct: 126 DGPLDMRMNPRVGLTAAQVVNQFGEKELADLIYEFGEERRSRRIARAIVRAR---PVSTT 182

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ ++       K+ RIHPATR+FQALRI+VN E+ ++   L+ A K L+ GG L+V+
Sbjct: 183 AQLARVVSAAAPAMKSERIHPATRTFQALRIYVNQELGQIEALLKVAPKLLRKGGRLVVI 242

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDR+ K                        +++ +T+K +   +E+   N R+RS
Sbjct: 243 SFHSLEDRIAKDALRE--------------GGQQGIYEVLTRKPLTAGEEETDRNPRARS 288

Query: 309 AKLRAGMR 316
           AKLRA  +
Sbjct: 289 AKLRAAEK 296


>gi|88704092|ref|ZP_01101807.1| S-adenosyl-methyltransferase mraW [Congregibacter litoralis KT71]
 gi|88701919|gb|EAQ99023.1| S-adenosyl-methyltransferase mraW [Congregibacter litoralis KT71]
          Length = 308

 Score =  324 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 119/309 (38%), Positives = 174/309 (56%), Gaps = 9/309 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
              H  VLL + +  L  +P  + +D TFG GG+SR   +       + A D+D  A   
Sbjct: 2   AASHETVLLHEAVDALVGSPAGLYVDGTFGRGGHSREILRRLDNQGRLFACDKDEEAERD 61

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E +    ++FS  + +F+ L  ++ ++G   VDG++ DLGVSS Q+D  +RGFSFQ+ 
Sbjct: 62  AEELLAG-DDRFSFARGSFAALPAFLEERGLGAVDGILLDLGVSSPQLDQAERGFSFQQD 120

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
           GPLDMRM  S G SA+D +  A  +++  +L   GEE+ A RIA AIVK R   P   T 
Sbjct: 121 GPLDMRMDRSRGESAADWIAAAPEQEIIDVLREYGEERYARRIAAAIVKARSEKPLTRTA 180

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            L+S++ +     + ++ HPATRSFQA+RI VN E+++LA+ L  A   L  GG L+V+S
Sbjct: 181 QLASIVSEAHPRWEKHK-HPATRSFQAIRIRVNRELDDLAELLSLALSVLAVGGRLVVIS 239

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRLVK+     S      R +   +    V   +  K V  + ++VA N RSRSA
Sbjct: 240 FHSLEDRLVKRHLRDMSRGPQLPRDLPVRDVDVGVPMRLLGKAVRASDQEVAANPRSRSA 299

Query: 310 KLRAGMRTV 318
            +R   +  
Sbjct: 300 IMRCAEKIA 308


>gi|332531941|ref|ZP_08407825.1| S-adenosyl-methyltransferase MraW [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332038568|gb|EGI75011.1| S-adenosyl-methyltransferase MraW [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 285

 Score =  324 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 113/285 (39%), Positives = 166/285 (58%), Gaps = 13/285 (4%)

Query: 42  DATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDY 98
           D TFG GG+S            + A+D+DP A+    E   D   +F++    FS L + 
Sbjct: 2   DGTFGRGGHSGQILARLGDEGRLQAIDQDPQAIQSA-EKFAD-DPRFAIAHTRFSNLYEV 59

Query: 99  VPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANV 153
                    VDG++ D+GVSS Q+D  +RGFSF K GPLDMRM  + G SA+  + +A +
Sbjct: 60  AQQNDLIGKVDGILLDIGVSSPQLDDAERGFSFMKDGPLDMRMDPTTGRSAAQWLAEAEL 119

Query: 154 KDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRS 213
            D+T ++  LGEEK   RIAH +++ R+  P  TT+ L+ L+ + V   K+   HPATR+
Sbjct: 120 DDITHVIKKLGEEKFGKRIAHKVLEVREHTPITTTKQLADLVDEAVPV-KDKFKHPATRT 178

Query: 214 FQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVR 273
           FQA+RI++N+E+EE+   L+SA K LK GG L+V+SFHSLEDR+VK+F   +S      R
Sbjct: 179 FQAIRIYINSELEEIQTALQSAVKVLKPGGRLVVISFHSLEDRIVKQFIRKQSKGEALPR 238

Query: 274 HMIPSNAHPAVFQSI--TKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
            +  ++A      ++    K + P+  +V  N RSRS+ LR   R
Sbjct: 239 GLPLTDAQINKNLTLKAVGKAIKPSAAEVERNPRSRSSVLRIAQR 283


>gi|32490963|ref|NP_871217.1| hypothetical protein WGLp214 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|30173030|sp|Q8D2Y8|RSMH_WIGBR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|25166169|dbj|BAC24360.1| yabC [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 309

 Score =  324 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 108/309 (34%), Positives = 170/309 (55%), Gaps = 15/309 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            H+PV+L +VI  +   P    +DATFG GG+SR           +I +DRDP ++    
Sbjct: 1   MHIPVMLNEVIKSIKIIPNGTYIDATFGCGGHSRCILSKLNEKGKLIVIDRDPKSIEFAC 60

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +       FS++  Y         V G++FDLG+S  QI   +RGFSF   G
Sbjct: 61  SI---KDRRLIPIHGNFSKILKYSIKYKIFGKVQGILFDLGLSFSQIKDSNRGFSFMHDG 117

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+   GISA + +N AN+KD++ ++   GEEK   +I++ I K R+     TT++
Sbjct: 118 PLDMRMNNLHGISAKEWINNANIKDISFVIKEFGEEKFYKKISNVICKYRKIKNINTTKE 177

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L +LI K   +    + HPA RSFQA+RI++NNE++EL   L    K +   G ++ +SF
Sbjct: 178 LVNLINKACGY-FYKKKHPARRSFQAIRIYINNELQELKLALNDIIKIISPKGRIVFISF 236

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPA---VFQSITKKVVVPTQEDVAFNRRSR 307
           HSLEDR++KKF  + S K +    +    +      +++    K + P+++++ +N++SR
Sbjct: 237 HSLEDRIIKKFIINNSRKKIYPYKLPILESKIKNDNIYKLKYFKKIQPSKKEILYNKKSR 296

Query: 308 SAKLRAGMR 316
           SA LR   +
Sbjct: 297 SAILRFAEK 305


>gi|313677372|ref|YP_004055368.1| s-adenosyl-methyltransferase mraw [Marivirga tractuosa DSM 4126]
 gi|312944070|gb|ADR23260.1| S-adenosyl-methyltransferase MraW [Marivirga tractuosa DSM 4126]
          Length = 301

 Score =  324 bits (831), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 101/303 (33%), Positives = 160/303 (52%), Gaps = 13/303 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77
           H PV+L++ +  L   P  + +D TFG GG+S++  +      ++  D+D  A    +  
Sbjct: 5   HEPVMLQQCLDGLAIKPNGIYVDLTFGGGGHSKAILEKLTDGKLLGFDQDQDAEVNAEAI 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
                  F   QA F  ++ Y+     K VDGV+ DLGVSS Q +  +RGFS +    LD
Sbjct: 65  NHP---GFEFVQANFRFVKKYLKLYRIKQVDGVLADLGVSSHQFNKAERGFSTRFDAELD 121

Query: 135 MRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM      +A +V+N+ +  DL +I G+ GE + A  +A AIV  R ++P  T  +L  
Sbjct: 122 MRMDQHAPVTAKEVINEYSESDLHKIFGLYGEVRNAKTLASAIVSARAASPINTIGELKE 181

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           ++ +     + N+     + FQALRI VN E++ L + L   E+ +K GG L+V+S+HSL
Sbjct: 182 ILARFAKRGRENK--YYAQVFQALRIEVNEELKALEEALLQMEEVIKPGGRLVVMSYHSL 239

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           EDRLVK +           +    +   P  F+S+ +K +   +E++  N R+RSAKLR 
Sbjct: 240 EDRLVKNYINKGKLDGEEEKDFYGNVLKP--FKSVNRKPITAEEEELENNNRARSAKLRI 297

Query: 314 GMR 316
             +
Sbjct: 298 AEK 300


>gi|17547571|ref|NP_520973.1| S-adenosyl-methyltransferase MraW [Ralstonia solanacearum GMI1000]
 gi|20138981|sp|Q8XVH9|RSMH_RALSO RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|17429875|emb|CAD16559.1| putative s-adenosyl-methyltransferase mraw protein [Ralstonia
           solanacearum GMI1000]
          Length = 319

 Score =  324 bits (831), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 115/314 (36%), Positives = 176/314 (56%), Gaps = 23/314 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VL ++ I  L      + +D TFG GG+SR   +    G  +IA D+DP A++    
Sbjct: 11  HQTVLRDEAIDALLWRDDGIYIDGTFGRGGHSRLILERLGPGGRLIAFDKDPAAITEAG- 69

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +F++   +F+ L   +  +G   V GV+ DLG+SS QID G RGFSF+  GPL
Sbjct: 70  --TVEDARFAIEHDSFAHLDAALDARGIGRVAGVLLDLGISSPQIDEGARGFSFRMDGPL 127

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS----APFQTT 188
           DMRM  + GI+A+  + +A+ +D+ R++   GEE+ A +IA AIV RR+      P   T
Sbjct: 128 DMRMDTTRGITAAQWLAEADERDIARVIRDYGEERFAVQIAKAIVARRRESGTRGPLDRT 187

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L++L+ + V   +     PATR+FQALRI VN E+ +L  GL+SA + L+ GG L+V+
Sbjct: 188 SELAALVAQAVKT-REKGQDPATRTFQALRIHVNQELADLETGLKSAFERLEQGGRLVVI 246

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPS------NAHPAVFQSITKKVVVPTQEDVAF 302
           SFHSLEDR+VK+F  + +    +    +               + + +  V P++ +V+ 
Sbjct: 247 SFHSLEDRIVKRFMQALARPEQSAAPEMRRAPLRAHELPAPQLRLLGR--VRPSEAEVSA 304

Query: 303 NRRSRSAKLRAGMR 316
           N RSRSA +R   R
Sbjct: 305 NPRSRSAIMRVAER 318


>gi|332673556|gb|AEE70373.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori 83]
          Length = 308

 Score =  324 bits (831), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 112/311 (36%), Positives = 174/311 (55%), Gaps = 14/311 (4%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70
           +      H  VLL++V+    P    V++D T G GG+S++      +  +I +D+D FA
Sbjct: 1   MQEIENLHQSVLLQEVLQAFAPLEEGVLIDCTLGLGGHSKAILSQKPHLKLIGIDKDKFA 60

Query: 71  VSCGQETMRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSF 127
               +E ++ ++ +++L    F++  ++ +      + GV+ DLGVSS+Q+D  +RGF+F
Sbjct: 61  QEIAKERLKAFEGRYNLLSGGFAKRFKEALETHNKEIKGVLVDLGVSSLQLDDDNRGFNF 120

Query: 128 QKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
             S  LDMRM   G ++A  ++N   V  L +I    GE K+  +IAH I +RR   PF+
Sbjct: 121 -HSHALDMRMDLEGDLNAQKIINSYPVVALEKIFKDYGEIKEYKKIAHKIAERRAKKPFK 179

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
             +DLS  +     FSKN +IHPAT  FQA+RI VN E+EEL + L+ A      G +L 
Sbjct: 180 DAKDLSDFLSS---FSKNKKIHPATLVFQAVRIEVNRELEELKEFLQCARNL--KGAILC 234

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           V+SFHSLED LVK  F   +   +          + + A+ + +TKK + P+ E++  NR
Sbjct: 235 VISFHSLEDSLVKNAFKDYAKNCICDPLSFKCTCSNNHALGEILTKKPITPSPEEIKNNR 294

Query: 305 RSRSAKLRAGM 315
           RSRSAK+R   
Sbjct: 295 RSRSAKMRVFQ 305


>gi|28493187|ref|NP_787348.1| S-adenosyl-methyltransferase MraW [Tropheryma whipplei str. Twist]
 gi|28572698|ref|NP_789478.1| S-adenosyl-methyltransferase [Tropheryma whipplei TW08/27]
 gi|42559466|sp|Q83GN7|RSMH_TROWT RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|42559467|sp|Q83HJ6|RSMH_TROW8 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|28410830|emb|CAD67216.1| S-adenosyl-methyltransferase [Tropheryma whipplei TW08/27]
 gi|28476228|gb|AAO44317.1| unknown [Tropheryma whipplei str. Twist]
          Length = 317

 Score =  324 bits (831), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 115/306 (37%), Positives = 169/306 (55%), Gaps = 9/306 (2%)

Query: 17  IGDHVPVLLEKVIALLNPA--PGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVS 72
           +  H+PV+L +V  L+ P    G V +DAT GAGG+S +      G+ +  +DRD +A++
Sbjct: 1   MNGHLPVMLGEVCQLIEPVLGIGDVFIDATLGAGGHSEAILMSSQGALLYGIDRDAYALA 60

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             ++ +  + ++      TF +   Y+ +      +FDLG+SSMQID  DRGFS+ KSGP
Sbjct: 61  LARKRLSGFADRCKFVHDTFDKFDKYLSNLHPKVFLFDLGMSSMQIDNPDRGFSYMKSGP 120

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+ S  I+A +++N  +   L RI    G+E+ A RIA  I K R  +   TT  +
Sbjct: 121 LDMRMNESDKITAKEILNGYSETALIRIFRDYGQERYAKRIARQICKARSVSELVTTCQV 180

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           S LI+         + HPA R FQALRI VN+E+  L   L  A   L+ GG ++V+S+H
Sbjct: 181 SQLIRDVCPPHIR-KGHPAKRVFQALRIEVNSELLFLRTALEKALDLLQVGGRIVVLSYH 239

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+VK  F S S   +     I        ++ I K +  P + ++A N R+ SA L
Sbjct: 240 SLEDRIVKHLFRSVSVSQLPKGFYI---NKDPEYKLIGKDLKNPKETEIANNPRASSAHL 296

Query: 312 RAGMRT 317
           RA  R 
Sbjct: 297 RAVERV 302


>gi|328778908|ref|XP_001120634.2| PREDICTED: probable S-adenosyl-L-methionine-dependent
           methyltransferase CG14683-like [Apis mellifera]
          Length = 388

 Score =  324 bits (831), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 123/328 (37%), Positives = 180/328 (54%), Gaps = 29/328 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           H+PV++ +V+  L P+PGK+ +D TFGAGG+S    +   N+   ALDRDP A     + 
Sbjct: 61  HIPVMVNEVLHYLEPSPGKIFVDMTFGAGGHSMKILESSPNIKIFALDRDPIAHQFALKL 120

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              Y EQ       FS+L   +    V     DG +FD G SSMQ+D G+RGFS  K GP
Sbjct: 121 SEKYPEQIIPLLGRFSELPQLLCKYKVNVNSIDGFLFDFGCSSMQLDIGERGFSLSKDGP 180

Query: 133 LDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQT 187
           LDMRM         +A++V+ +   +DL  IL I G EK A +IA AI++ R +    +T
Sbjct: 181 LDMRMDGFRYPQEPTAAEVLKEITEEDLAFILKIYGNEKYAKKIARAIIETRYTFRNLKT 240

Query: 188 TQDLSSLIQKTVYFSK----NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
           TQ+L+ LI+  +   +        H AT++FQALRIFVNNE+ E+  G+  A   LK  G
Sbjct: 241 TQELAQLIESVISEKRFDQLGRFTHCATKTFQALRIFVNNELNEINYGIIIAGFYLKTNG 300

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP-------------SNAHPAVFQSITK 290
            LI +SFHSLED +VK+  ++   + +A +  +                 +   ++ + K
Sbjct: 301 RLITISFHSLEDTIVKRHMSANITETVANKIPLKFSDYGKHYTLTEMKALNRIPWKMLHK 360

Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMRTV 318
            V+ PT+E++  N RSRSAK RA  + +
Sbjct: 361 HVITPTEEEINKNPRSRSAKFRAITKVI 388


>gi|78188031|ref|YP_378369.1| methyltransferase [Chlorobium chlorochromatii CaD3]
 gi|88909192|sp|Q3ANW1|RSMH_CHLCH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|78170230|gb|ABB27326.1| methyltransferase [Chlorobium chlorochromatii CaD3]
          Length = 328

 Score =  324 bits (831), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 105/330 (31%), Positives = 178/330 (53%), Gaps = 22/330 (6%)

Query: 12  AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--------SNVIA 63
           A+H T   H PVL  +V+A L      + +D T G G +S +  +          S +I 
Sbjct: 2   ALHDTY--HDPVLAAEVVATL-VQRSGIYVDGTLGGGSHSLALLQALQAQGLLESSLLIG 58

Query: 64  LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD--------KGVDGVVFDLGVSS 115
           +D+D  A++   E ++ ++    L +  F  +   V            V GV+ DLGVSS
Sbjct: 59  IDQDSDALAMAAERLQAWQPYTRLLKGNFRDMASLVQQLCDAEGRACAVTGVLLDLGVSS 118

Query: 116 MQIDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAH 174
            Q+D  +RGFS+ +SGPLDMRM  +  ++A++++N A+  +L RI    GEE ++  +A 
Sbjct: 119 FQLDTAERGFSYMRSGPLDMRMDNTAPLTAAELINHADEAELARIFYHYGEEPRSRALAR 178

Query: 175 AIVKRRQS-APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLR 233
           A+V++R+    F TT++L++L+++  +  +   I   +R FQALRI VN+E+  L + L 
Sbjct: 179 AVVQQREKMGNFTTTEELAALVRRLTHGGEKAVIKTLSRLFQALRIAVNDELGALHEVLE 238

Query: 234 SAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKV 292
            A + L   G L V+S+HSLEDR+VK FF   +      + + +           +TK+ 
Sbjct: 239 GALELLDGNGRLAVMSYHSLEDRVVKHFFTHHAQCDWGPKGVALREPLSQGALTIVTKRP 298

Query: 293 VVPTQEDVAFNRRSRSAKLRAGMRTVERSI 322
           ++ + +++  N R+RSAKLR   +   ++I
Sbjct: 299 MLASADEIERNPRARSAKLRVAAKNQPKTI 328


>gi|41396357|gb|AAS04222.1| hypothetical protein MAP_1905c [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 386

 Score =  324 bits (831), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 121/319 (37%), Positives = 181/319 (56%), Gaps = 18/319 (5%)

Query: 20  HVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69
           HVPVLLE+ + LL PA         G V+LDAT GAGG++  F        +IALDRDP 
Sbjct: 61  HVPVLLERCVELLTPALTRRHPDGSGAVLLDATLGAGGHAERFLADLPGLRLIALDRDPS 120

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSSMQIDCGDR 123
           A+   +E +  + ++ +L    +  +   + + G      VDG++FDLGVSSMQ+D  +R
Sbjct: 121 ALEIARERLARFADRITLVHMRYDGIAAALTESGYAATESVDGILFDLGVSSMQLDRPER 180

Query: 124 GFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GF++ +  PLDMRM   S ++A+D++N  +  +L  IL   GEE+ A RIA  IV+RR  
Sbjct: 181 GFAYAQDAPLDMRMDPGSPLTAADILNTYDEAELADILHRYGEERFARRIAAQIVRRRAK 240

Query: 183 APFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            PF +T DL SL+ + +   ++    HPA R+FQALRI VN+E++ L + L +A  AL  
Sbjct: 241 EPFTSTADLVSLLYQAIPAPARRTGGHPAKRTFQALRIAVNDELDTLRRALPAALDALAV 300

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
            G ++V+++ SLEDR+VK+ FA        V   +    H   F+++T         ++ 
Sbjct: 301 DGRIVVLAYQSLEDRIVKRLFAQAVASRTPVDLPVELPGHEPRFRALTHGAGRADAAEIE 360

Query: 302 FNRRSRSAKLRAGMRTVER 320
            N RS + +LRA  RT   
Sbjct: 361 RNPRSAAVRLRALQRTQAP 379


>gi|281212537|gb|EFA86697.1| hypothetical protein PPL_00499 [Polysphondylium pallidum PN500]
          Length = 919

 Score =  324 bits (831), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 115/317 (36%), Positives = 173/317 (54%), Gaps = 28/317 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H PVL  +VI  L   PG   +D TFG GG++        +  VIA DRDP      +  
Sbjct: 606 HKPVLFREVIDRLRLKPGSCYIDCTFGLGGHTTGILDRQPDCYVIAFDRDPHVFELTKHL 665

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKG-----VDGVVFDLGVSSMQIDCGDRGFSFQKS-- 130
            + YK++       FS++   + + G     +DG++FD GVSS+Q+D  +RGFSF+K   
Sbjct: 666 RQKYKDRLITIHGEFSRMSSLLAENGLSDLPIDGILFDFGVSSLQLDDPERGFSFRKDLY 725

Query: 131 GPLDMRM---SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
           GPLDMRM     S +SA D+VN  ++K L  I+   GEE+   +IA  IV RR   P +T
Sbjct: 726 GPLDMRMNKDDSSTLSAFDIVNTFSIKRLRDIMYFYGEERHTKKIAEEIVLRRSIEPIRT 785

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T +L ++I+K + +   N+    +R F+ALR++VN+E +E+ +GL  AEK L+  G L+ 
Sbjct: 786 TNELVAIIEKCIPYPAANK--SISRIFRALRMYVNSETQEVKKGLLEAEKVLQPNGELVA 843

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +SFHS+EDR+VKKFF SR  +                        V    +++ +N RS+
Sbjct: 844 ISFHSIEDRIVKKFFQSRKNQSFVFPD--------------GDDPVYAAPDELEWNPRSK 889

Query: 308 SAKLRAGMRTVERSIED 324
            A LR+  RT  + + +
Sbjct: 890 PAILRSAQRTKSKPLAN 906


>gi|145296128|ref|YP_001138949.1| S-adenosyl-methyltransferase MraW [Corynebacterium glutamicum R]
 gi|263447419|sp|A4QFN1|RSMH_CORGB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|140846048|dbj|BAF55047.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 337

 Score =  324 bits (830), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 108/324 (33%), Positives = 170/324 (52%), Gaps = 20/324 (6%)

Query: 20  HVPVLLEKVIALLNPA-----PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVS 72
           HVPV+ +++ AL+           VI+DAT GAGG++  F        +I LDRD  A+ 
Sbjct: 12  HVPVMRDRMAALIAENVEALGENAVIVDATLGAGGHAEFFLNTFPKARLIGLDRDQNALR 71

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVP-----------DKGVDGVVFDLGVSSMQIDCG 121
             +  +  + E+F   Q  F  L++ +            + G+ G +FDLGVSSMQ+D  
Sbjct: 72  DARARLAPFGERFIGVQTRFDGLREVLESVEGDIIDLAREHGIAGALFDLGVSSMQLDQV 131

Query: 122 DRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGF+++   PLDMRM    GI+A+D++N  +  D+ RIL   G+E+ A +IA A++K R
Sbjct: 132 ERGFAYRTDAPLDMRMDATQGITAADILNTYSHGDIARILKTYGDERFAGKIASAVLKER 191

Query: 181 QSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
           +  PF T+  L  L+   +  + +    HPA R+FQALR+ VNNE++ L   L     AL
Sbjct: 192 EKEPFTTSARLVELLYDAIPAATRRTGGHPAKRTFQALRVEVNNELDSLKNVLPQITDAL 251

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
             GG  + +S+ S ED+LVKKFF   +         +        F+ +T+     ++ +
Sbjct: 252 NVGGRAVFMSYQSHEDKLVKKFFTDLTTSKTPPGLPVDLPGTAPQFKQVTRGAETASEAE 311

Query: 300 VAFNRRSRSAKLRAGMRTVERSIE 323
           +  N R+   K+RA  R    S +
Sbjct: 312 IEENPRAAPVKVRAIERIANNSGD 335


>gi|300702954|ref|YP_003744556.1| s-adenosyl-dependent methyl transferase [Ralstonia solanacearum
           CFBP2957]
 gi|299070617|emb|CBJ41912.1| S-adenosyl-dependent methyl transferase [Ralstonia solanacearum
           CFBP2957]
          Length = 319

 Score =  324 bits (830), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 112/314 (35%), Positives = 175/314 (55%), Gaps = 23/314 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VL ++ +  L      + +D TFG GG+SR   +    G  +IA D+DP A++    
Sbjct: 11  HQTVLRDEAVDALLWRDDGIYIDGTFGRGGHSRLLLERLGPGGRLIAFDKDPAAITEAG- 69

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +F++   +F+ L   +  +G   V GV+ DLG+SS QID G RGFSF+  GPL
Sbjct: 70  --TVEDARFAIEHDSFAHLDAALDARGIGRVAGVLLDLGISSPQIDEGARGFSFRMDGPL 127

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS----APFQTT 188
           DMRM  + GI+A+  + +A+ +D+ R++   GEE+ A +IA AIV RR       P   T
Sbjct: 128 DMRMDTTRGITAAQWLAEADERDIARVIRDYGEERFAVQIAKAIVARRSESGTRGPLDRT 187

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L++L+ + V   +     PATR+FQALRI VN E+ +L  GL++A + L+ GG L+V+
Sbjct: 188 SELAALVAQAVKT-REKGQDPATRTFQALRIHVNQELADLETGLKAAFERLEQGGRLVVI 246

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPS------NAHPAVFQSITKKVVVPTQEDVAF 302
           SFHSLEDR+VK+F  + +    +    +               + + +  V P++ +V+ 
Sbjct: 247 SFHSLEDRIVKRFMQALARPEQSAAPEMRRAPLRAHELPAPQLRLLGR--VRPSEAEVSA 304

Query: 303 NRRSRSAKLRAGMR 316
           N R+RSA +R   R
Sbjct: 305 NPRARSAIMRVAER 318


>gi|213647633|ref|ZP_03377686.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
          Length = 293

 Score =  324 bits (830), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 109/275 (39%), Positives = 161/275 (58%), Gaps = 12/275 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++  Q
Sbjct: 6   KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAQ 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +FS+    FS L DYV ++     +DG++ DLGVSS Q+D  +RGFSF + G
Sbjct: 66  TI---NDPRFSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFMRDG 122

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + G SA++ +  A   D+  +L   GEE+ A RIAHAIV+R +  P   T++
Sbjct: 123 PLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIAHAIVERNREQPMTRTKE 182

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ ++       K+   HPATR+FQA+RI+VN+E+EE+ Q L+S+   L +GG L ++SF
Sbjct: 183 LAEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLASGGRLSIISF 241

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF 285
           HSLEDR+VK+F   +S        +  + A     
Sbjct: 242 HSLEDRIVKRFMREQSRGPQVPAGLPMTEAQLKKL 276


>gi|157112116|ref|XP_001657398.1| s-adenosyl-methyltransferase mraw [Aedes aegypti]
 gi|108878145|gb|EAT42370.1| s-adenosyl-methyltransferase mraw [Aedes aegypti]
          Length = 357

 Score =  324 bits (830), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 128/330 (38%), Positives = 180/330 (54%), Gaps = 31/330 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           HVPV+  + I  L P   ++ LD TFGAGG+++   K+  N  +IALDRDP A       
Sbjct: 28  HVPVMATETIKFLKPQDNELFLDMTFGAGGHTKEILKVAPNAKIIALDRDPTAHDMALAM 87

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            + Y  Q       FS+L + +    V     DG++FD G SSMQ D G RGFS  K+GP
Sbjct: 88  AKKYPGQIFPILGRFSELPEQLAKINVNQQSIDGIIFDFGCSSMQFDEGSRGFSISKNGP 147

Query: 133 LDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR-QSAPFQT 187
           LDMRM         SA++++ + +  DL RIL I GEEKQA +IA AIV+ R      +T
Sbjct: 148 LDMRMDQDRFPDTPSAAEILAKIDEVDLARILKIYGEEKQAKKIARAIVETRYSIKKIET 207

Query: 188 TQDLSSLIQKTVYFSK------NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
           T++L+ ++Q  +              HPAT++FQALRIFVNNE+ E+  G+  A++ LK 
Sbjct: 208 TKELADIVQSCLGSGSFRLDKLQRPSHPATKTFQALRIFVNNELNEINYGMILAQRYLKI 267

Query: 242 GGLLIVVSFHSLEDRLVKKFFA-------------SRSGKVMAVRHMIPSNAHPAVFQSI 288
           GG +I ++FHSLED +VK+                      ++  H +  N     +  +
Sbjct: 268 GGKMIAITFHSLEDTIVKRHVMGNVLNDMANTLPLKYCSHTISYEHDVMENVMKTSWHQM 327

Query: 289 TKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318
           TK VV+P  ++V  N RSRSAKLRA +R  
Sbjct: 328 TKHVVLPGDDEVEQNPRSRSAKLRAVVRVA 357


>gi|300690333|ref|YP_003751328.1| S-adenosyl-dependent methyl transferase [Ralstonia solanacearum
           PSI07]
 gi|299077393|emb|CBJ50018.1| S-adenosyl-dependent methyl transferase [Ralstonia solanacearum
           PSI07]
          Length = 319

 Score =  324 bits (830), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 116/323 (35%), Positives = 179/323 (55%), Gaps = 23/323 (7%)

Query: 11  SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRD 67
           +   +T   H  VL ++ +  L      + +D TFG GG+SR   +    G  +IA D+D
Sbjct: 2   TTQANTGLRHQTVLRDEAVDALLWRDDGIYIDGTFGRGGHSRLILERLGPGGRLIAFDKD 61

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRG 124
           P A++           +F++   +F+ L   +  +G   V GV+ DLG+SS QID G RG
Sbjct: 62  PAAITEAG---TVEDARFAIEHDSFAHLDAALDARGIGRVAGVLLDLGISSPQIDEGARG 118

Query: 125 FSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS- 182
           FSF+  GPLDMRM  + GI+A+  + +A+ +D+ R++   GEE+ A +IA AIV RR   
Sbjct: 119 FSFRMDGPLDMRMDTTRGITAAQWLAEADARDIARVIRDYGEERFAVQIAKAIVARRSES 178

Query: 183 ---APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
               P   T +L++L+ + V   +     PATR+FQALRI VN E+ +L  GL++A + L
Sbjct: 179 GTRGPLDRTSELAALVAQAVKT-REKGQDPATRTFQALRIHVNQELADLETGLKAAFERL 237

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRS---GKVMAVRHMIPSNAHP---AVFQSITKKVV 293
           + GG L+V+SFHSLEDR+VK+F  + +             P  AH       + + +  V
Sbjct: 238 EQGGRLVVISFHSLEDRIVKRFMQALARPEQSTAPEMRRAPLRAHELPAPQLRLLGR--V 295

Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316
            P++ +V+ N R+RSA +R   R
Sbjct: 296 RPSEAEVSANPRARSAIMRVAER 318


>gi|289740101|gb|ADD18798.1| putative SAM-dependent methyltransferases [Glossina morsitans
           morsitans]
          Length = 381

 Score =  324 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 122/330 (36%), Positives = 179/330 (54%), Gaps = 33/330 (10%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77
           H PVL  + I  LNP P K+ +D TFGAGG+ +          V ALDRDP A    Q+ 
Sbjct: 50  HTPVLCAEAINYLNPGPQKIYIDMTFGAGGHCKKLLDSCKDIKVYALDRDPVAYELAQQM 109

Query: 78  MRDYKEQFSLFQATFSQLQDYVPD-----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            ++Y+ + +     FS L   + +       VDG++FD G SSMQ +  +RGFS  K+GP
Sbjct: 110 TKEYEGRLTPLLGRFSDLPHLLKEQNIVRHSVDGILFDFGCSSMQFEEPERGFSVSKNGP 169

Query: 133 LDMRMSC------SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APF 185
           LDMRM C        ++A+DV+ +A   DL +IL I GEEK A +IA AIV  R +  P 
Sbjct: 170 LDMRMDCAPGMNNDQVTAADVLARAEEPDLVKILRIYGEEKAAKKIARAIVDARSALHPI 229

Query: 186 QTTQDLSSLIQKTVYFSK------NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
           +TT+ L+ L+   ++ +           H AT++FQALRIFVNNE+ E+  G+  A   L
Sbjct: 230 KTTKQLADLVASCLHETPFRLDKLQRPTHVATKTFQALRIFVNNELNEINYGMVLANAYL 289

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-------------FQ 286
           +  G L+ ++FHSLED +VK+         +A    +    +  V             ++
Sbjct: 290 RLQGRLVAITFHSLEDTIVKRHLYGNVIDGLANPVPLKYCGYDVVHDEETMQSITLSNWK 349

Query: 287 SITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
            + K V++P +E++  N RSRSAKLRA ++
Sbjct: 350 PLHKHVILPGEEEIKHNSRSRSAKLRAAVK 379


>gi|300088323|ref|YP_003758845.1| S-adenosyl-methyltransferase MraW [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299528056|gb|ADJ26524.1| S-adenosyl-methyltransferase MraW [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 356

 Score =  324 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 111/300 (37%), Positives = 171/300 (57%), Gaps = 15/300 (5%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF 69
           + HT  DH PV+L + +  L   PG   +D T GAGG++R+   M   G  ++ LD DP 
Sbjct: 1   MSHT--DHTPVMLRESLQALAVGPGGRYVDGTTGAGGHARAILDMSAPGGQLLGLDADPE 58

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFS 126
           ++    E +  Y+  F L  A FS++++         V G++ DLG++SMQ+    RGFS
Sbjct: 59  SLKIASENLSGYEGSFRLVNANFSRMEEICRQYDFYPVHGIILDLGLASMQLTETGRGFS 118

Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           FQ   PLDMR S    ++A+++VN  +  ++  IL   GEE+++  IA  IV+ R   P 
Sbjct: 119 FQYDAPLDMRFSPDQKLTAAEIVNTWSETEIADILYRYGEERRSRAIARRIVESR---PL 175

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           +TT  L++L+ KT+   ++  IHPATR+FQALRI VN+E+  L   L  A + L   G L
Sbjct: 176 KTTTQLANLVAKTI--GRSGDIHPATRTFQALRIAVNDELARLEDTLDQAVRLLGYSGRL 233

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           +V+++HSLEDR+VK+FF   +   +    +      H A  + + +KV+ PT E+V  N 
Sbjct: 234 VVIAYHSLEDRIVKQFFQREATDCVCPVELPECRCGHVARLRVLNRKVMTPTDEEVRANP 293


>gi|284991692|ref|YP_003410246.1| S-adenosyl-methyltransferase MraW [Geodermatophilus obscurus DSM
           43160]
 gi|284064937|gb|ADB75875.1| S-adenosyl-methyltransferase MraW [Geodermatophilus obscurus DSM
           43160]
          Length = 330

 Score =  324 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 117/301 (38%), Positives = 173/301 (57%), Gaps = 12/301 (3%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           HVPVLL++V  LL PA    G V++DAT G  G+S +  +      ++ LDRDP A +  
Sbjct: 17  HVPVLLDRVTELLAPACAADGAVLVDATLGLAGHSLALLRAHPGLRLVGLDRDPDARAEA 76

Query: 75  QETMRDYK--EQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK 129
              + D    ++ ++  A F +L   +   G   V  V+FDLGVSS+Q+D  DRGFS+  
Sbjct: 77  TRRLTDAGVADRATVVPAVFDELPGVLDRLGLTEVQAVLFDLGVSSLQLDRPDRGFSYAA 136

Query: 130 SGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM  S   +A+DVVN      L R+L + GEE+ A+RIA AI + R+ APF  T
Sbjct: 137 DAPLDMRMDPSAPRTAADVVNTYPTDRLARVLRVYGEERFATRIAQAITRERERAPFTHT 196

Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           + L+ L++ ++  + +    HPA R+FQALRI VN+E+  L + L +A  AL  GG + V
Sbjct: 197 ERLAHLVRASIPAATRRTGGHPAKRTFQALRIEVNDELGVLERALPAALDALTVGGRIAV 256

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           ++FHSLEDR+VK+  A+ +         +P        + +T+    P++ +VA N RS 
Sbjct: 257 ITFHSLEDRIVKQTLAAGAVDRTPPGLPVPLPEMGPTLRLLTRGGEAPSEAEVAANPRSA 316

Query: 308 S 308
           S
Sbjct: 317 S 317


>gi|83595986|gb|ABC25345.1| S-adenosyl-methyltransferase [uncultured marine bacterium Ant29B7]
          Length = 304

 Score =  324 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 107/311 (34%), Positives = 154/311 (49%), Gaps = 17/311 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H PVLL+  I  L+  P  + +DATFG GG+SR+          +   D+DP        
Sbjct: 4   HDPVLLDACIQHLHIQPHGIYVDATFGGGGHSRAILDQLGPEGKLFGFDQDPDTSKNAPN 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                 ++F L    F  +   +    V   DG++ DLGVSS Q+D G RGFSF++   L
Sbjct: 64  -----DDRFQLLPFNFEHITRILRLHKVTAVDGILADLGVSSHQLDEGSRGFSFRQHAEL 118

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  SG  A + +     + L + L   G+  QA R+A AI++ R +     T+DL 
Sbjct: 119 DMRMNPQSGPGAREWLETVTWEQLAQTLREFGDVHQAGRVATAIIQARDAGQMTWTEDLY 178

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
             +Q      +        + FQA+RI VN E+  L   L      LK GG  +V+S+HS
Sbjct: 179 ECLQPMCKGPR--GKKLPAQVFQAIRIAVNRELAVLDSLLVDGANLLKTGGRYVVMSYHS 236

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR VK+FF     +  A R          +F  IT+K +V +QE++A N R+RSAKLR
Sbjct: 237 LEDRRVKRFFKEGVLEGEAARDD--HGRRYEIFDRITRKPLVASQEEIAINPRARSAKLR 294

Query: 313 AGMRTVERSIE 323
              +  E +  
Sbjct: 295 VVEKI-EPTWG 304


>gi|269219541|ref|ZP_06163395.1| S-adenosyl-methyltransferase MraW [Actinomyces sp. oral taxon 848
           str. F0332]
 gi|269210783|gb|EEZ77123.1| S-adenosyl-methyltransferase MraW [Actinomyces sp. oral taxon 848
           str. F0332]
          Length = 335

 Score =  324 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 112/314 (35%), Positives = 175/314 (55%), Gaps = 11/314 (3%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCG 74
           HVPVLLE+ + LL PA      V++DAT G GG+S +F +  +N+  + +DRDP A+   
Sbjct: 20  HVPVLLEECVNLLGPALTAEAPVMIDATLGMGGHSFAFLERFANLTVVGIDRDPEAIELA 79

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            E +  + ++F   +AT+  + D   + G     D V+ DLGVSS+Q+D   RGFS+   
Sbjct: 80  GERLARFGKRFVAVRATYDDVSDVAAEYGRAGRADAVLMDLGVSSLQLDDEGRGFSYSGD 139

Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
           GPLDMRM  +G  +A+DV+  A+  +LTRIL   GEE+ ASRIA  I+  R + P + T 
Sbjct: 140 GPLDMRMDKTGGPTAADVLASADKAELTRILREYGEERFASRIAARILAARAAEPIERTG 199

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L+ +++  +   ++    +P  R+FQALRI VN+E+  L + +  A +A+  GG + V 
Sbjct: 200 QLADIVRDAIPAPARRTGGNPCKRTFQALRIAVNDELALLRRAIPRAIEAIAVGGRIAVE 259

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           S+ SLED++VK+  A  +         +  +      + +T+  V     ++  N RS S
Sbjct: 260 SYQSLEDKIVKREMAKGATSSTPAGLPVELDDRAPYLRLLTRGAVKADAAELQANPRSAS 319

Query: 309 AKLRAGMRTVERSI 322
            +LRA  R  E   
Sbjct: 320 VRLRAAERLRETPH 333


>gi|317009278|gb|ADU79858.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori India7]
          Length = 308

 Score =  323 bits (829), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 114/311 (36%), Positives = 177/311 (56%), Gaps = 14/311 (4%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFA 70
           +    G H  VLL++V+    P    V++D T G GG+S++      ++  I +D+D FA
Sbjct: 1   MQEIGGLHQSVLLQEVLQAFTPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFA 60

Query: 71  VSCGQETMRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSF 127
               +E ++ ++ +++L    F++  ++ +      + GV+ DLGVSS+Q+D  +RGF+F
Sbjct: 61  QEIAKERLKAFEGRYNLLSGGFAKRFKESLETHNKEIKGVLVDLGVSSLQLDDDNRGFNF 120

Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
             S  LDMRM   S ++A  V+N  +V  L +I    GE K+  +IAH I +RR   PF+
Sbjct: 121 -HSHTLDMRMDLESDLNAQKVINSYSVVALEKIFRDYGEIKEYKKIAHKIAERRAKKPFK 179

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
             +DLS  +     FSKN +IHPAT  FQA+RI VN+E+EEL + L+ A      G +L 
Sbjct: 180 DAKDLSDFLSS---FSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCARNL--KGAILC 234

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           V+SFHSLED+LVK  F   +              + + A+ + +TKK + P+ E++  NR
Sbjct: 235 VISFHSLEDKLVKNAFKDYAKNCTCDPLSFKCACSNNHALGEILTKKPITPSPEEIKNNR 294

Query: 305 RSRSAKLRAGM 315
           RSRSAK+R   
Sbjct: 295 RSRSAKMRVFQ 305


>gi|261855063|ref|YP_003262346.1| S-adenosyl-methyltransferase MraW [Halothiobacillus neapolitanus
           c2]
 gi|261835532|gb|ACX95299.1| S-adenosyl-methyltransferase MraW [Halothiobacillus neapolitanus
           c2]
          Length = 317

 Score =  323 bits (829), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 116/323 (35%), Positives = 169/323 (52%), Gaps = 14/323 (4%)

Query: 4   KSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSN 60
            +   +S+        H  VLL + +  L      V LDATFG GG+S +          
Sbjct: 1   MNALAVSTQEKSEALTHETVLLNEAVEALAVRADGVYLDATFGRGGHSAAILAKLNNHGR 60

Query: 61  VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSM 116
           + A DRD  A+    E +     +F +  A FS    ++   G    VDGV+FDLGVSS 
Sbjct: 61  LFATDRDLRAL-AAGEALASKDARFQIHHAAFSTAAQWLASMGLQGKVDGVLFDLGVSSP 119

Query: 117 QIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175
           QID  +RGFSFQ++GPLDMRM+  +G +A++ + +A  +++  +L  LG+EK + RIA  
Sbjct: 120 QIDEAERGFSFQQNGPLDMRMNQHAGETAAEWLAEAEEEEIANVLYRLGDEKFSRRIARR 179

Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           IV+ R + P  TT DL   I +     ++ R HPATRSFQA+R+ +N E++E++  L   
Sbjct: 180 IVETRAAQPLATTFDLVRCIVEATP-RRDPRKHPATRSFQAIRLHINRELDEISAALSQV 238

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295
              L  GG L+V+SFHSLEDR+VK F    S      +         A    +    +  
Sbjct: 239 VDLLSIGGRLVVISFHSLEDRIVKNFIRDES---TTDKDFFGQPVGTARLSRV-GGSIRA 294

Query: 296 TQEDVAFNRRSRSAKLRAGMRTV 318
           + E++  N RSRSA +R   R  
Sbjct: 295 SAEEIVRNPRSRSAIMRVAERVA 317


>gi|299065600|emb|CBJ36772.1| S-adenosyl-dependent methyl transferase [Ralstonia solanacearum
           CMR15]
          Length = 319

 Score =  323 bits (829), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 111/314 (35%), Positives = 177/314 (56%), Gaps = 23/314 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H  VL ++ +  L      + +D TFG GG+SR   +    G  +IA D+DP A++    
Sbjct: 11  HQTVLRDEAVDALLWRDDGIYIDGTFGRGGHSRLILERLGSGGRLIAFDKDPAAITEAG- 69

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +F++   +F+Q+   +  +G   V GV+ DLG+SS QID G RGFSF+  GPL
Sbjct: 70  --TVEDARFAIEHDSFAQMGSALDARGIGRVAGVLLDLGISSPQIDEGARGFSFRMDGPL 127

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS----APFQTT 188
           DMRM  + GI+A+  + +A+ +D+ R++   GEE+ A +IA AIV RR+      P   T
Sbjct: 128 DMRMDTTRGITAAQWLAEADERDIARVIRDYGEERFAVQIAKAIVARRRESGTRGPLDRT 187

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L++L+ + V   +     PATR+FQALRI +N E+ +L  GL++A + L+ GG L+V+
Sbjct: 188 SELAALVAQAVKT-REKGQDPATRTFQALRIHINQELADLETGLKAAFERLEQGGRLVVI 246

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPS------NAHPAVFQSITKKVVVPTQEDVAF 302
           SFHSLEDR+VK+F  + +    +    +               + + +  V P++ +V+ 
Sbjct: 247 SFHSLEDRIVKRFMQALARPEQSAAPEMRRAPLRAHELPAPQLRLLGR--VRPSEAEVSA 304

Query: 303 NRRSRSAKLRAGMR 316
           N R+RSA +R   R
Sbjct: 305 NPRARSAIMRVAER 318


>gi|298491041|ref|YP_003721218.1| S-adenosyl-methyltransferase MraW ['Nostoc azollae' 0708]
 gi|298232959|gb|ADI64095.1| S-adenosyl-methyltransferase MraW ['Nostoc azollae' 0708]
          Length = 301

 Score =  323 bits (829), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 109/308 (35%), Positives = 170/308 (55%), Gaps = 26/308 (8%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFA 70
           ++     HVPVL ++VI  L  +P    LD T G GG+SR   +   +V   A+D+D  A
Sbjct: 11  LNEIAFSHVPVLSQQVIGGLVVSPRGNYLDLTVGGGGHSRLILETAEDVKVTAVDQDEDA 70

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           +   +  + ++ ++ +   + F+      P     G++ DLGVSS  +D  +RGFSF+ +
Sbjct: 71  LKAAKANLAEFGDRVNFIHSNFANYD--FPPNTYHGILADLGVSSYHLDNPERGFSFRNT 128

Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM+    ++A D++N  +  +L  I    GEE+ + RIA  IV++R   PF TT 
Sbjct: 129 ANLDMRMNQQQFLTAGDIINNWDEGELADIFFKYGEERLSRRIARRIVEKR---PFHTTT 185

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           +L+++I  +V    +  R+HPATR FQALRI VN+E++ L   +  A  +L  GG + ++
Sbjct: 186 ELANVIAYSVPPKYRYGRLHPATRVFQALRIVVNDELKVLETLIDKAPHSLVPGGRIAII 245

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDRLVK    + S                 + Q +TKK ++ T+ ++  N RSRS
Sbjct: 246 SFHSLEDRLVKHGLRNLS-----------------LLQVLTKKPILGTESEITENLRSRS 288

Query: 309 AKLRAGMR 316
           AKLR   +
Sbjct: 289 AKLRIAEK 296


>gi|224436850|ref|ZP_03657839.1| S-adenosyl-methyltransferase MraW [Helicobacter cinaedi CCUG 18818]
 gi|313143328|ref|ZP_07805521.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Helicobacter cinaedi CCUG 18818]
 gi|313128359|gb|EFR45976.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Helicobacter cinaedi CCUG 18818]
          Length = 311

 Score =  323 bits (829), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 107/309 (34%), Positives = 169/309 (54%), Gaps = 16/309 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQE 76
            H  VL  +V+  LN   G V +D T G GG++ S  +     ++ A DRD  A+S  ++
Sbjct: 2   KHFSVLKNEVLEALNLESGAV-IDCTLGYGGHTLSLLEQNPNIHIYAFDRDESALSLAKQ 60

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  Y  +  +    F+   D + ++    V G++ D+GVSSMQ+D   RGFSF  +  L
Sbjct: 61  RLAPYASRLHIQHCAFANALDSLGNEQLARVRGILADIGVSSMQLDDKHRGFSFTSNN-L 119

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     ++A+ V+N  +   L  I  I GE +Q+ ++   IV  R+  PF++  +LS
Sbjct: 120 DMRMDSTQNLNAAKVINTYSAMRLEEIFRIYGEIRQSKKLTELIVSTREKKPFESALELS 179

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG----GLLIVV 248
            LI++  +F +   IHPAT +FQALRI VN E+E+L   L+S E A   G      + ++
Sbjct: 180 ELIER--HFPRIGGIHPATLAFQALRIEVNGELEQLQTLLQSIESAFINGVLYDCKVAII 237

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           SFHSLEDR++K+ F   +       +        + A+   +TKK ++P++ ++  N+RS
Sbjct: 238 SFHSLEDRIIKQTFKQWAKSCKCGENALKCECGNNNALGSILTKKPILPSETEIIQNKRS 297

Query: 307 RSAKLRAGM 315
           RSAKLR   
Sbjct: 298 RSAKLRIFQ 306


>gi|297181413|gb|ADI17602.1| predicted s-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [uncultured delta
           proteobacterium HF0130_19C20]
          Length = 314

 Score =  323 bits (829), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 111/307 (36%), Positives = 170/307 (55%), Gaps = 10/307 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H+ VL ++V+    P   + ILD T G GG+S    +      +  +DRD  AV    + 
Sbjct: 7   HISVLQKEVVD-FAPPSPQTILDCTLGGGGHSYKLLEKYPKASLYGIDRDSIAVKAADQR 65

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++++++Q  L  A+FS+L   +   G    D ++ D+GVSS QI C +RGFSF   GPLD
Sbjct: 66  LQNFRKQTCLIHASFSELPAMIDKWGNPIFDYIIADIGVSSEQISCPERGFSFLNEGPLD 125

Query: 135 MRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           MRM      ++A ++VN AN  +L  IL   GEE+ A RI   I+  R+   F+TT +L+
Sbjct: 126 MRMDPERQHLTAENIVNNANEHELVNILRNFGEERFARRIVSTILVERRKKKFRTTLELA 185

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            L++  +    +    +PAT++FQALRI VNNE+ EL   L +  K LK  G + V+SFH
Sbjct: 186 ELVKNVIPNKMRKRGFNPATKTFQALRIAVNNELLELTTLLENVPKFLKNSGRMAVISFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK+ F       +    +         + + +T++ V  ++E++A N RSRSA 
Sbjct: 246 SLEDRIVKQKFRKWENPCVCPTDLPYCVCGGIPLGKVLTRRQVKASKEEIAKNPRSRSAH 305

Query: 311 LRAGMRT 317
           LR   + 
Sbjct: 306 LRVFTKI 312


>gi|294338811|emb|CAZ87145.1| S-adenosyl-dependent methyl transferase MraW [Thiomonas sp. 3As]
          Length = 317

 Score =  323 bits (829), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 118/318 (37%), Positives = 173/318 (54%), Gaps = 14/318 (4%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDR 66
           ++ +      H  VLL + +  L   P  V LDATFG GG+SR   +       +IA+DR
Sbjct: 4   TTPMPSAETAHRTVLLHEAVDQLITNPDGVYLDATFGRGGHSREILRRLSPAGRLIAIDR 63

Query: 67  DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDR 123
           DP A+    +    +  +F +  A FS+    + ++GV   DG++FDLGVSS Q+D  +R
Sbjct: 64  DPQAIEAAAQI---HDARFVIKHAPFSEFARVLHEQGVAQADGLLFDLGVSSPQLDQPER 120

Query: 124 GFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR-Q 181
           GFSF+  GPLDMRM   SG + ++ +  A+V ++  +L   G+E+ A +IA  IV RR  
Sbjct: 121 GFSFRADGPLDMRMDNSSGQTVAEYLATASVDEIATVLRDYGDERAAVQIAKKIVARRDA 180

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            AP   + +L++L+   V   +  +  PATR+FQALRI VN E+ ++   L      L+ 
Sbjct: 181 GAPLARSGELAALVASAVKSREPGQ-DPATRTFQALRIHVNAELAQIETALSQVLDCLRP 239

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV--VPTQED 299
           GG L V+SFHSLED L+K+F    +      R         A FQ   K+VV   P+  +
Sbjct: 240 GGRLAVISFHSLEDALIKRFIHRHARAPAVDRRQPFVPGVSAEFQPQLKEVVRMRPSAAE 299

Query: 300 VAFNRRSRSAKLRAGMRT 317
           ++ N RSRSA LR   R 
Sbjct: 300 ISGNARSRSAMLRVAQRV 317


>gi|172040893|ref|YP_001800607.1| S-adenosyl-methyltransferase MraW [Corynebacterium urealyticum DSM
           7109]
 gi|263446151|sp|B1VHD2|RSMH_CORU7 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|171852197|emb|CAQ05173.1| S-adenosyl-methyltransferase [Corynebacterium urealyticum DSM 7109]
          Length = 353

 Score =  323 bits (829), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 110/355 (30%), Positives = 188/355 (52%), Gaps = 30/355 (8%)

Query: 9   MSSAIHHTIGD--HVPVLLEKVIALLNP------APGK-VILDATFGAGGYSRSFCKMGS 59
           M++   H      HVPV+ ++++ L+        AP + +I+D T GAGG++ +F +   
Sbjct: 1   MAANTPHDPSSPGHVPVMRQRMVELVGIGVTAGSAPAQPIIVDGTLGAGGHTEAFLEAYP 60

Query: 60  N--VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP-------------DKGV 104
           N  VI LDRDP A++  +  +  + ++F  +Q  F  + + +              ++G+
Sbjct: 61  NAIVIGLDRDPNALAEARARLERFGQRFFSYQTRFDGIGEALEHFSEDPDFPVDIREQGI 120

Query: 105 DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGIL 163
            G +FDLGVSSMQ+D  DRGF+++   PLDMRM  S  ++A++++N     +L RIL   
Sbjct: 121 SGFLFDLGVSSMQLDQEDRGFAYRVDAPLDMRMDPSSRLTAAEILNTYEHGELARILKRY 180

Query: 164 GEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVN 222
           G+EK A +IA A+++ R+  PF+ +  L  L+  T+  + +    HPA R+FQALRI VN
Sbjct: 181 GDEKFAGKIASAVIREREKQPFENSARLVDLLYATIPAAARRTGGHPAKRTFQALRIEVN 240

Query: 223 NEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHP 282
            E+E L   + +A   L+  G  + +S+ SLED++VK+     +         +      
Sbjct: 241 AELESLELVIPAAFSWLRVDGAGVFMSYQSLEDKIVKQQLKGMTESSTPPGLPVELPGTE 300

Query: 283 AVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDDSFVHLPRLPTLS 337
             F+ +T+     +++++A N RS   ++RA  R    +    S    PR P +S
Sbjct: 301 PEFELLTRGAEKASEQEIAENSRSAPVRVRAARRIGAHA----SGAGGPRYPLVS 351


>gi|109947477|ref|YP_664705.1| S-adenosyl-methyltransferase MraW [Helicobacter acinonychis str.
           Sheeba]
 gi|122973304|sp|Q17XC0|RSMH_HELAH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|109714698|emb|CAJ99706.1| S-adenosyl-methyltransferase [Helicobacter acinonychis str. Sheeba]
          Length = 308

 Score =  323 bits (829), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 111/311 (35%), Positives = 173/311 (55%), Gaps = 14/311 (4%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70
           +      H  VLL++V+    P    V +D T G GG+S++      +  +I +D+D  A
Sbjct: 1   MQEIENLHKSVLLQEVLQAFAPLEKGVFIDCTLGLGGHSKALLSQKPHLKLIGIDKDKHA 60

Query: 71  VSCGQETMRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSF 127
               +E ++ ++  + +    F++  ++ +   G  + GV+ DLGVSS+Q+D  +RGF+F
Sbjct: 61  QEIAKERLKAFEGCYHILSGGFAKRFKEALETHGEQIKGVLVDLGVSSLQLDDDNRGFNF 120

Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
             S  LDMRM   S ++A  V+N   +  L +I    G  K+  +IAH IV+RR   PF+
Sbjct: 121 -HSHALDMRMDLESELNAQKVINSYCIVALEKIFKDYGAIKEYKKIAHHIVERRAKKPFK 179

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
             +DLS  +      SKN +IHPAT  FQA+RI VN E+EEL + L+ A K    G +L 
Sbjct: 180 DAKDLSDFLSS---LSKNKKIHPATLVFQAIRIEVNRELEELKEFLQDAMKL--KGAILC 234

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMA--VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           V+SFHSLED LVK  F + +   +   +      + + A+ + +TKK + P+ E++  NR
Sbjct: 235 VISFHSLEDALVKNAFKNYAKNCICDALNFKCTCSNNHALGEILTKKPITPSLEEIKHNR 294

Query: 305 RSRSAKLRAGM 315
           RSRSAK+R   
Sbjct: 295 RSRSAKMRVFQ 305


>gi|317014121|gb|ADU81557.1| 16S rRNA m(4)C1402 methyltranserfase [Helicobacter pylori
           Gambia94/24]
          Length = 308

 Score =  323 bits (828), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 114/311 (36%), Positives = 174/311 (55%), Gaps = 14/311 (4%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70
           +      H  VLL++V+    P    V++D T G GG+S++      +  +I +D+D FA
Sbjct: 1   MQEIENLHQSVLLQEVLQAFAPLEEGVLIDCTLGLGGHSKAILSQKPHLKLIGIDKDKFA 60

Query: 71  VSCGQETMRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSF 127
               +E ++ ++ ++ L    F++  ++ +   G  + GV+ DLGVSS+Q+D  +RGF+F
Sbjct: 61  QEIAKERLKAFEGRYHLLSGGFAKRFKEALEIHGERIKGVLVDLGVSSLQLDDDNRGFNF 120

Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
             S  LDMRM   S ++A  V+N   V  L +I    GE K+  +IAH IV+RR   PF+
Sbjct: 121 -HSHALDMRMDLESELNAQKVINSYPVVALEKIFRDYGEIKEYKKIAHKIVERRAKKPFK 179

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
             +DLS  +      SKN +IHPAT  FQA+RI VN+E+EEL + L+ A      G +L 
Sbjct: 180 DAKDLSEFLSS---LSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCARNL--KGAILC 234

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           V+SFHSLED LVK  F   +   +          + + A+   +TKK + P+ E++  NR
Sbjct: 235 VISFHSLEDALVKNAFKDYAKNCICDPSSFKCACSNNHALGAILTKKPITPSPEEIKNNR 294

Query: 305 RSRSAKLRAGM 315
           RSRSAK+R   
Sbjct: 295 RSRSAKMRVFQ 305


>gi|86606931|ref|YP_475694.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. JA-3-3Ab]
 gi|123505404|sp|Q2JSF0|RSMH_SYNJA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|86555473|gb|ABD00431.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. JA-3-3Ab]
          Length = 309

 Score =  323 bits (828), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 125/313 (39%), Positives = 164/313 (52%), Gaps = 35/313 (11%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQET 77
            H  VL E V+A L P  G   LD T G GG+S +  + G+  V+ LDRDP A+   Q  
Sbjct: 15  HHESVLTEAVVAYLQPQQGGAFLDVTLGGGGHSLALLQRGADRVVGLDRDPTALQAAQAR 74

Query: 78  MRD---YKEQFSLFQATFSQLQ--------DYVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126
           +        +  L+   F+           +       DG+V DLGVSS Q+DC +RGFS
Sbjct: 75  LAAAGIPGNRLQLWHLNFADFDLQRHGFRDERGQGIPFDGIVADLGVSSPQLDCPERGFS 134

Query: 127 FQKSGPLDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           F+  GPLDMRM  +    +A+D VN+  V+DL  I    GEE+ A RIAH I + R   P
Sbjct: 135 FRAEGPLDMRMDPTADQETAADWVNRRPVEDLIDIFVRYGEERFARRIAHHIERSR---P 191

Query: 185 FQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
             TT  L+ ++ + V  + +  RIHPATR FQALRI VN E+E L   L  A   LK GG
Sbjct: 192 LFTTTQLAHVVWQAVPPAARRGRIHPATRIFQALRIAVNRELEALETLLAQAPNWLKPGG 251

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            L V+SFHSLEDRLVK  F +                    +Q +T K + P++ +   N
Sbjct: 252 RLAVISFHSLEDRLVKWAFRTD-----------------PRWQVLTPKPLCPSELEQQRN 294

Query: 304 RRSRSAKLRAGMR 316
            R+RSAKLR   R
Sbjct: 295 SRARSAKLRVAAR 307


>gi|313837465|gb|EFS75179.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL037PA2]
 gi|314971672|gb|EFT15770.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL037PA3]
          Length = 337

 Score =  323 bits (828), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 112/321 (34%), Positives = 173/321 (53%), Gaps = 11/321 (3%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPG---KVILDATFGAGGYSRSFCKMGSN--VIA 63
           M++    +   HVPV+  +++ LL P      +V +D T G GG++ +      +  ++ 
Sbjct: 3   MATDAIGSDAVHVPVMRARILDLLGPTLESGRRVHVDGTLGMGGHAEAVLTRFPDVQLVG 62

Query: 64  LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDC 120
           +DRD  A++     ++ + ++  L  A   +L + + D G   VD V+ DLG+SS+QID 
Sbjct: 63  IDRDRQALTMAGARLKPFVDRVHLVHAVHDELPEVLDDLGLGRVDSVLLDLGLSSLQIDE 122

Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS+    PLDMRM  S G +A+ V+N+++  DL RIL   GEEK A RI  AIV  
Sbjct: 123 VNRGFSYSVDSPLDMRMDQSRGRTAAQVLNESDPGDLVRILHEYGEEKFADRIVRAIVTE 182

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSKNNR--IHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
           R   P +T+  L  +I + +  +  ++   HPA R+FQALRI VN E+E L+  L  A  
Sbjct: 183 RDRQPIETSGRLVEIITRAIPVAVRHKRSGHPAKRTFQALRIAVNREMETLSAVLPRALD 242

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297
            L  GG + V+++HSLEDR VK+ F             I   +  A F  +T+    P  
Sbjct: 243 RLNVGGRIAVLAYHSLEDRPVKEVFREACDDTAPAGLPIVPESMAAKFSPVTRGAERPDA 302

Query: 298 EDVAFNRRSRSAKLRAGMRTV 318
           ++++ N RS SA+LR   R  
Sbjct: 303 DEMSANPRSASARLRVIERVR 323


>gi|309804817|ref|ZP_07698881.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LactinV
           09V1-c]
 gi|309806276|ref|ZP_07700289.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LactinV
           03V1-b]
 gi|308165927|gb|EFO68146.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LactinV
           09V1-c]
 gi|308167260|gb|EFO69426.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LactinV
           03V1-b]
          Length = 280

 Score =  323 bits (828), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 97/256 (37%), Positives = 147/256 (57%), Gaps = 13/256 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76
            H  VLL + I  LN     V +DATFG GG++    K     ++I  D+D +A+   ++
Sbjct: 6   KHYSVLLHETIDNLNLKNDGVYVDATFGGGGHASYLLKQLSNGHLIGFDQDEYAIELAKK 65

Query: 77  TM-----RDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSF 127
           +       + K + SL    F  LQ  +       G+DG+ +DLGVSS Q D  +RGFS+
Sbjct: 66  SFSEVLKANSKPKLSLVHDNFGNLQQNLAKLGFIDGIDGIYYDLGVSSPQFDQPERGFSY 125

Query: 128 QKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           + +  LDMRM  +  + A  +VN  + K+L+ IL   G+EK A +IA  IV +R   P  
Sbjct: 126 RFNARLDMRMDQTKDLDAYKIVNTWSQKELSNILFKYGDEKYARQIAKNIVAKRAIKPIT 185

Query: 187 TTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           TT +L  +I++ +  F++    HPA +SFQA+RI VN+E+E L + L  A + LK GG +
Sbjct: 186 TTFELVDIIKEAIPAFARRTGGHPAKKSFQAIRIAVNDELEVLEKSLLDAIEILKPGGRI 245

Query: 246 IVVSFHSLEDRLVKKF 261
            V++F SLED++VKK+
Sbjct: 246 CVITFQSLEDKIVKKY 261


>gi|241257348|ref|XP_002404552.1| SAM dependent methyltransferase, putative [Ixodes scapularis]
 gi|215496661|gb|EEC06301.1| SAM dependent methyltransferase, putative [Ixodes scapularis]
          Length = 292

 Score =  323 bits (828), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 115/290 (39%), Positives = 171/290 (58%), Gaps = 13/290 (4%)

Query: 37  GKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFS 93
             V +D TFG GG+SR      S    +I +D+DP A++  QE +     + ++  + F 
Sbjct: 6   DGVYVDCTFGRGGHSRLLLSHLSPQARLIVIDKDPQAIAVAQE-LAAQDSRVTVVHSGFG 64

Query: 94  QLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVN 149
            L   + +  V    GV+ DLG+SS QID  +RGFSF + GPLDMRM  SG ++A   + 
Sbjct: 65  DLAQALDELEVGPLQGVMMDLGISSPQIDDAERGFSFMREGPLDMRMDTSGGLTAEQWLA 124

Query: 150 QANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHP 209
           + +V+ L  ++   GEE+ A +IA AIV RRQS P  TT+DL+ L+   V  ++    HP
Sbjct: 125 EVSVEVLKEVIAEYGEERFAFQIAKAIVDRRQSRPLHTTRDLAELVAGVV-RTREKGQHP 183

Query: 210 ATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF--ASRSG 267
           ATR+FQA+RI++N E+EELA  L S    L   G L V++FHSLEDR+VK+F   A+R  
Sbjct: 184 ATRTFQAIRIYLNRELEELAYALPSILSRLATRGRLAVIAFHSLEDRMVKQFMNAAARPA 243

Query: 268 KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           +  +   ++  +    + QS+ +  ++PT E+ + N R+RSA LR   RT
Sbjct: 244 QEQSRLPILEKDLPQPLVQSLGR--ILPTDEESSDNPRARSAVLRVVQRT 291


>gi|121998878|ref|YP_001003665.1| S-adenosyl-methyltransferase MraW [Halorhodospira halophila SL1]
 gi|263456068|sp|A1WYV1|RSMH_HALHL RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|121590283|gb|ABM62863.1| S-adenosyl-methyltransferase MraW [Halorhodospira halophila SL1]
          Length = 324

 Score =  323 bits (828), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 117/316 (37%), Positives = 177/316 (56%), Gaps = 13/316 (4%)

Query: 11  SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRD 67
           +    T   H PVL    +A L+  P    +DAT+G GG++R   +       +   DRD
Sbjct: 10  AEQEPTATTHRPVLYGAALAALDVRPDGCYVDATYGRGGHARGILERLGPQGRLWVADRD 69

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDR 123
           P A++  +ET+ D   + ++  A  ++L   + ++G    VDG++ DLG+SS Q+D  DR
Sbjct: 70  PEALAHARETLAD-DPRCTVLGAELAELPRLLAEQGLAAGVDGLLADLGISSPQVDNPDR 128

Query: 124 GFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GFSFQ+ GPLDMRM  + G SA+ ++ + + +D+  +L  LGEE+ A RIA AIV  R +
Sbjct: 129 GFSFQRDGPLDMRMDPTTGESAAALLERLSARDIAGVLRQLGEERHAGRIARAIVAARDA 188

Query: 183 A-PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
             P +TT  L+ L+++ V   +  R HPATR+FQALRI VN+E+ +L + L      L  
Sbjct: 189 GDPPRTTLALARLVEQAVPRREPGR-HPATRTFQALRIAVNDELGQLDRFLEGVIDLLAP 247

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300
           GG L V++FHSLEDR VK+F    S    +     +P        + + +  +   + +V
Sbjct: 248 GGRLAVIAFHSLEDRRVKRFIRRASSVGDLPPSVPVPPAGCQPRLRPLGRD-LRADEGEV 306

Query: 301 AFNRRSRSAKLRAGMR 316
           A N R+RSA LR   R
Sbjct: 307 AGNPRARSAVLRVAER 322


>gi|224050409|ref|XP_002191093.1| PREDICTED: similar to methyltransferase 5 domain containing 1
           [Taeniopygia guttata]
          Length = 443

 Score =  323 bits (828), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 133/335 (39%), Positives = 186/335 (55%), Gaps = 38/335 (11%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H+PV+LE+V+  L+P PG+  LD TFGAGG++ +  +  S+  V ALDRDP A    Q+ 
Sbjct: 108 HIPVMLEEVVNCLSPQPGQRFLDMTFGAGGHTAALLERASDISVYALDRDPTAHRMAQQL 167

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            + Y +Q       FSQ +  +   GV     DGV+ D G SSMQ+D  +RGFS QK GP
Sbjct: 168 AQAYPKQLQPLLGRFSQSEALLISSGVEPGSLDGVLLDAGCSSMQLDTPERGFSLQKDGP 227

Query: 133 LDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           LDMRM      +  +A+DVVN  + + L  +L   GEE+ A RIA AIV+ R   P   T
Sbjct: 228 LDMRMDHDRCPAMATAADVVNALDQRALASVLSAYGEERHARRIAAAIVQARSIYPITRT 287

Query: 189 QDLSSLIQKTVYFSK--------NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           + L+S++      S            +H AT++FQ LRIFVN+E+ EL  GL++AEK L+
Sbjct: 288 RQLASIVAGAFPASALYARKDLLQRPVHVATKTFQGLRIFVNDELHELLIGLKTAEKFLR 347

Query: 241 AGGLLIVVSFHSLEDRLVKKFF-------ASRSGKVMAVRHMI------------PSNAH 281
            GG L+ +SFHSLEDR++K+F            G    +R  +            P    
Sbjct: 348 PGGRLVALSFHSLEDRIIKRFLHGIDITEKYNLGSKQKIRQALKNASKGEDTQGSPCGKS 407

Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
            + + SI KKV+ P  +D+  N R RSAKLRA ++
Sbjct: 408 NSKWISIQKKVLTPQAKDIQINPRGRSAKLRAAIK 442


>gi|309809920|ref|ZP_07703768.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners SPIN
           2503V10-D]
 gi|308169708|gb|EFO71753.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners SPIN
           2503V10-D]
          Length = 280

 Score =  323 bits (828), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 97/256 (37%), Positives = 147/256 (57%), Gaps = 13/256 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76
            H  VLL + I  LN     V +DATFG GG++    K     ++I  D+D +A+   ++
Sbjct: 6   KHYSVLLHETIDNLNLKNDGVYVDATFGGGGHASYLLKQLSNGHLIGFDQDEYAIELAKK 65

Query: 77  TM-----RDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSF 127
           +       + K + SL    F  LQ  +       G+DG+ +DLGVSS Q D  +RGFS+
Sbjct: 66  SFLEVLKANSKPKLSLVHDNFGNLQQNLAKLGFIDGIDGIYYDLGVSSPQFDQPERGFSY 125

Query: 128 QKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           + +  LDMRM  +  + A  +VN  + K+L+ IL   G+EK A +IA  IV +R   P  
Sbjct: 126 RFNARLDMRMDQTKDLDAYKIVNTWSQKELSNILFKYGDEKYARQIAKNIVAKRAIKPIT 185

Query: 187 TTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           TT +L  +I++ +  F++    HPA +SFQA+RI VN+E+E L + L  A + LK GG +
Sbjct: 186 TTFELVDIIKEAIPAFARRTGGHPAKKSFQAIRIAVNDELEVLEKSLLDAIEILKPGGRI 245

Query: 246 IVVSFHSLEDRLVKKF 261
            V++F SLED++VKK+
Sbjct: 246 CVITFQSLEDKIVKKY 261


>gi|240168225|ref|ZP_04746884.1| S-adenosyl-methyltransferase MraW [Mycobacterium kansasii ATCC
           12478]
          Length = 330

 Score =  323 bits (828), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 111/323 (34%), Positives = 178/323 (55%), Gaps = 18/323 (5%)

Query: 22  PVLLEKVIALLNPA-----PGK---VILDATFGAGGYSRSFCKMGS--NVIALDRDPFAV 71
           PVL  + + LL PA     P     +++DAT GAGG++  F +      +I LDRDP A+
Sbjct: 2   PVLARRCVELLAPALTRRHPDGFGAILVDATLGAGGHAERFLRELPGLRLIGLDRDPSAL 61

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSSMQIDCGDRGF 125
              ++ +  + E+ +L +  +  +   + + G      VDGV+FDLGVSSMQ+D  +RGF
Sbjct: 62  DIARDRLAPFAERITLIRTRYDGVASVLAELGYGAVESVDGVLFDLGVSSMQLDRAERGF 121

Query: 126 SFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           ++ K  PLDMRM     ++A+D+VN  +   L  IL   GEE+ A RIA  IV++R   P
Sbjct: 122 AYAKDAPLDMRMDPDIPLTAADIVNSYDEAALADILRRYGEERFARRIAERIVRQRAHTP 181

Query: 185 FQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
           F +T +L +++ + +  + +    HPA R+FQALRI VN+E++ L   + +A  AL+ GG
Sbjct: 182 FTSTSELVAVVYQAIPAAARRTGGHPAKRTFQALRIAVNDELDTLRGAVPAAMAALRVGG 241

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            ++V+++ SLEDR+VK+ FA        +   +    H   F+S+T         ++  N
Sbjct: 242 RIVVMAYQSLEDRIVKRVFADAVASKTPIGLPVELPGHGPRFRSLTHGAERADAAEMERN 301

Query: 304 RRSRSAKLRAGMRTVERSIEDDS 326
            RS + +LRA  R    +    +
Sbjct: 302 PRSAAVRLRALQRIDHEAEPRHA 324


>gi|161611203|ref|NP_960839.2| S-adenosyl-methyltransferase MraW [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|88911700|sp|P62474|RSMH_MYCPA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 335

 Score =  323 bits (828), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 121/319 (37%), Positives = 181/319 (56%), Gaps = 18/319 (5%)

Query: 20  HVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69
           HVPVLLE+ + LL PA         G V+LDAT GAGG++  F        +IALDRDP 
Sbjct: 10  HVPVLLERCVELLTPALTRRHPDGSGAVLLDATLGAGGHAERFLADLPGLRLIALDRDPS 69

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSSMQIDCGDR 123
           A+   +E +  + ++ +L    +  +   + + G      VDG++FDLGVSSMQ+D  +R
Sbjct: 70  ALEIARERLARFADRITLVHMRYDGIAAALTESGYAATESVDGILFDLGVSSMQLDRPER 129

Query: 124 GFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GF++ +  PLDMRM   S ++A+D++N  +  +L  IL   GEE+ A RIA  IV+RR  
Sbjct: 130 GFAYAQDAPLDMRMDPGSPLTAADILNTYDEAELADILHRYGEERFARRIAAQIVRRRAK 189

Query: 183 APFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            PF +T DL SL+ + +   ++    HPA R+FQALRI VN+E++ L + L +A  AL  
Sbjct: 190 EPFTSTADLVSLLYQAIPAPARRTGGHPAKRTFQALRIAVNDELDTLRRALPAALDALAV 249

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
            G ++V+++ SLEDR+VK+ FA        V   +    H   F+++T         ++ 
Sbjct: 250 DGRIVVLAYQSLEDRIVKRLFAQAVASRTPVDLPVELPGHEPRFRALTHGAGRADAAEIE 309

Query: 302 FNRRSRSAKLRAGMRTVER 320
            N RS + +LRA  RT   
Sbjct: 310 RNPRSAAVRLRALQRTQAP 328


>gi|194337867|ref|YP_002019661.1| S-adenosyl-methyltransferase MraW [Pelodictyon phaeoclathratiforme
           BU-1]
 gi|262824772|sp|B4SHF1|RSMH_PELPB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|194310344|gb|ACF45044.1| S-adenosyl-methyltransferase MraW [Pelodictyon phaeoclathratiforme
           BU-1]
          Length = 332

 Score =  323 bits (828), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 107/319 (33%), Positives = 170/319 (53%), Gaps = 21/319 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--------GSNVIALDRDPFAV 71
           H PVL+ +V+A L   P  + +D T G GG+S +  +         GS +I +D+D  A+
Sbjct: 9   HEPVLVNEVVAFLVRKP-GIYVDGTLGGGGHSSAMLRALFDAGFLAGSLLIGIDQDDAAL 67

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVP--------DKGVDGVVFDLGVSSMQIDCGDR 123
               ET++++     L +  F  +   +         +  V G++ DLGVSS QI+  DR
Sbjct: 68  RVAGETLKEFAASTVLVKGNFCDMGGLIASICAEKGLEPKVMGILLDLGVSSFQINTPDR 127

Query: 124 GFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GFS+ + GPLDMRM  +   SA+D+VN  + ++L R+    GEE ++  IA AIV  RQ 
Sbjct: 128 GFSYLREGPLDMRMDSNASRSAADIVNGYDEQELARLFYRYGEEPRSRSIARAIVAYRQK 187

Query: 183 APFQT-TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
               T TQ+L+++I+   +      I   +R FQALRI VN E++ L Q L      L  
Sbjct: 188 HGAVTYTQELAAIIRGNAHGG-EKVIKTLSRVFQALRIEVNAELDVLRQALYDGIDCLDE 246

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDV 300
            G + ++S+HSLEDR+VK+ FA ++      + + +           +T+K ++   +++
Sbjct: 247 TGRMAIISYHSLEDRIVKRVFAEKARSDWGPKGVGLREPLSWGSVAPVTRKPLIAAPDEI 306

Query: 301 AFNRRSRSAKLRAGMRTVE 319
           A N R+RSAKLR   +  E
Sbjct: 307 ALNSRARSAKLRVIEKIHE 325


>gi|311741520|ref|ZP_07715344.1| S-adenosyl-methyltransferase MraW [Corynebacterium pseudogenitalium
           ATCC 33035]
 gi|311303690|gb|EFQ79769.1| S-adenosyl-methyltransferase MraW [Corynebacterium pseudogenitalium
           ATCC 33035]
          Length = 346

 Score =  322 bits (827), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 113/330 (34%), Positives = 176/330 (53%), Gaps = 23/330 (6%)

Query: 10  SSAIHHTIGD---HVPVLLEKVIALLNPA-----PGKVILDATFGAGGYSRSFCKMGS-- 59
           +  +++ + +   HVPV+ E++  LL P         V++DAT GAGG++R F +     
Sbjct: 3   TKDLNYDVAENHGHVPVMRERMADLLRPQVEAAGDKAVLVDATLGAGGHTRYFLESFPEA 62

Query: 60  NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD-----------KGVDGVV 108
            VI +DRD  A+    E +  Y ++F    A F +L   + +            G+ G +
Sbjct: 63  RVIGVDRDKQALRNATERLAPYGDRFVGVNARFDELGSAIAEGEGDIFDSARSVGIAGAL 122

Query: 109 FDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEK 167
           FDLGVSSMQ+D  DRGF+++   PLDMRM  S GI+A+DV+N  +  DL R+L   G+E+
Sbjct: 123 FDLGVSSMQLDQADRGFAYKADAPLDMRMDPSQGITAADVLNTYSHGDLARVLKTYGDER 182

Query: 168 QASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIE 226
            A +IA A++K R   PF  +  L  L+   +  + +    HPA R+FQALR+ VN E+E
Sbjct: 183 FAGKIASAVLKERDKEPFVNSARLVELLYDVIPAATRRTGGHPAKRTFQALRVEVNRELE 242

Query: 227 ELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ 286
            +   L    +AL  GG  + +S+ SLEDR+VK  F   +         +        F+
Sbjct: 243 AIENVLPVITQALSEGGRAVFMSYQSLEDRIVKAAFKELTTSKTPAGLPMDLPGTAPKFK 302

Query: 287 SITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
            +T+     ++E+VA N R+ S ++RA  R
Sbjct: 303 IVTRGAEKASEEEVAENSRAASVRVRAIER 332


>gi|19553366|ref|NP_601368.1| S-adenosyl-methyltransferase MraW [Corynebacterium glutamicum ATCC
           13032]
 gi|62391005|ref|YP_226407.1| S-adenosyl-methyltransferase MraW [Corynebacterium glutamicum ATCC
           13032]
 gi|24212026|sp|Q8NNM7|RSMH_CORGL RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|21324936|dbj|BAB99559.1| Predicted S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [Corynebacterium glutamicum
           ATCC 13032]
 gi|41326344|emb|CAF20506.1| S-adenosylmethionine-dependent methyltransferase involved in cell
           envelope biogenesis [Corynebacterium glutamicum ATCC
           13032]
          Length = 337

 Score =  322 bits (827), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 108/324 (33%), Positives = 170/324 (52%), Gaps = 20/324 (6%)

Query: 20  HVPVLLEKVIALLN-----PAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVS 72
           HVPV+ +++ AL+           VI+DAT GAGG++  F        +I LDRD  A+ 
Sbjct: 12  HVPVMRDRMAALIAEHVEALGENAVIVDATLGAGGHAEFFLNTFPKARLIGLDRDQNALR 71

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVP-----------DKGVDGVVFDLGVSSMQIDCG 121
             +  +  + E+F   Q  F  L++ +            + G+ G +FDLGVSSMQ+D  
Sbjct: 72  DARARLAPFGERFIGVQTRFDGLREVLESVEGDIIDLAREHGIAGALFDLGVSSMQLDQV 131

Query: 122 DRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGF+++   PLDMRM    GI+A+D++N  +  D+ RIL   G+E+ A +IA A++K R
Sbjct: 132 ERGFAYRTDAPLDMRMDATQGITAADILNTYSHGDIARILKTYGDERFAGKIASAVLKER 191

Query: 181 QSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
           +  PF T+  L  L+   +  + +    HPA R+FQALR+ VNNE++ L   L     AL
Sbjct: 192 EKEPFTTSARLVELLYDAIPAATRRTGGHPAKRTFQALRVEVNNELDSLKNVLPQITDAL 251

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
             GG  + +S+ S ED+LVKKFF   +         +        F+ +T+     ++ +
Sbjct: 252 NVGGRAVFMSYQSHEDKLVKKFFTDLTTSKTPPGLPVDLPGTAPQFKQVTRGAETASEAE 311

Query: 300 VAFNRRSRSAKLRAGMRTVERSIE 323
           +  N R+   K+RA  R    S +
Sbjct: 312 IEENPRAAPVKVRAIERIGNNSGD 335


>gi|217032718|ref|ZP_03438203.1| hypothetical protein HPB128_201g21 [Helicobacter pylori B128]
 gi|298736407|ref|YP_003728933.1| S-adenosyl-methyltransferase [Helicobacter pylori B8]
 gi|216945592|gb|EEC24245.1| hypothetical protein HPB128_201g21 [Helicobacter pylori B128]
 gi|298355597|emb|CBI66469.1| S-adenosyl-methyltransferase [Helicobacter pylori B8]
          Length = 308

 Score =  322 bits (827), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 115/304 (37%), Positives = 176/304 (57%), Gaps = 14/304 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           H  VLL++V+    P    V++D T G GG+S++      ++  I +D+D FA    +E 
Sbjct: 8   HQSVLLQEVLQAFTPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFAQEIAKER 67

Query: 78  MRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++ ++ +++L    F++  ++ +   G  + GV+ DLGVSS+Q+D  +RGF+F  S  LD
Sbjct: 68  LKAFEGRYNLLSGGFAKRFKEALEIHGERIKGVLVDLGVSSLQLDDDNRGFNF-HSHTLD 126

Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM   S ++A  V+N   V  L +I    GE K+  +IAH I +RR   PF+  +DLS 
Sbjct: 127 MRMDLESELNAQKVINSYPVVALEKIFRDYGEIKEYKKIAHKIAERRAKKPFRDAKDLSD 186

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
            +     FSKN +IHPAT  FQA+RI VNNE+EEL + L+ A      G +L V+SFHSL
Sbjct: 187 FLSS---FSKNKKIHPATLVFQAVRIEVNNELEELKEFLQCARNL--KGAILCVISFHSL 241

Query: 254 EDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           ED LVK  F + +   +          + + A+ + +TKK + P+ E++  NRRSRSAK+
Sbjct: 242 EDALVKNAFKNYAKNCICDPLSFKCACSNNHALGEILTKKPITPSPEEIKNNRRSRSAKM 301

Query: 312 RAGM 315
           R   
Sbjct: 302 RVFQ 305


>gi|329942720|ref|ZP_08291499.1| S-adenosyl-methyltransferase MraW [Chlamydophila psittaci Cal10]
 gi|332287316|ref|YP_004422217.1| S-adenosyl-methyltransferase [Chlamydophila psittaci 6BC]
 gi|313847900|emb|CBY16895.1| putative S-adenosyl-methyltransferase [Chlamydophila psittaci RD1]
 gi|325506769|gb|ADZ18407.1| S-adenosyl-methyltransferase [Chlamydophila psittaci 6BC]
 gi|328814980|gb|EGF84969.1| S-adenosyl-methyltransferase MraW [Chlamydophila psittaci Cal10]
 gi|328914560|gb|AEB55393.1| S-adenosyl-methyltransferase MraW [Chlamydophila psittaci 6BC]
          Length = 298

 Score =  322 bits (827), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 112/308 (36%), Positives = 156/308 (50%), Gaps = 20/308 (6%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI---ALDRDPFAV 71
                H+PVL+ + ++L      K   D T GAGG++ +F     +++   A DRD  A+
Sbjct: 2   SATPSHIPVLVNECLSLFANRNPKFFCDVTVGAGGHAEAFLSEYPSIVSYDASDRDSAAL 61

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ-KS 130
           S  +E +  + ++     A+F  L     +   DG++ DLGVSSMQ+D   RGFSFQ   
Sbjct: 62  SLAKERLEKFGDRVHFRHASFEDLSKDSKEHVYDGILADLGVSSMQLDNLSRGFSFQGDD 121

Query: 131 GPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM    GI+AS+V+N    ++L +I    GEE Q    A A+V  R+     T +
Sbjct: 122 HDLDMRMDVTKGITASEVLNTLREEELGKIFREYGEEPQWKNAASAVVHFRKRKKIITVR 181

Query: 190 DLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           DL     K     +   +IHP T  FQALR++VN E  +L   L SA + L  GG LI++
Sbjct: 182 DLKDATAKVFPSYRLRKKIHPLTLIFQALRVYVNQEDLQLKVFLESAMRWLAPGGRLIII 241

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SF S EDR VK FF       +                 +TKKVV+PT E+   N R RS
Sbjct: 242 SFCSSEDRPVKWFFREAEKSGLGT--------------ILTKKVVMPTYEETRKNPRCRS 287

Query: 309 AKLRAGMR 316
           AKLR   +
Sbjct: 288 AKLRCFEK 295


>gi|317180415|dbj|BAJ58201.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori F32]
          Length = 308

 Score =  322 bits (827), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 113/311 (36%), Positives = 174/311 (55%), Gaps = 14/311 (4%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70
           +      H  VLL++V+    P    V++D T G GG+S++      +  +I +D+D FA
Sbjct: 1   MQEIENLHQSVLLQEVLQAFAPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFA 60

Query: 71  VSCGQETMRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSF 127
               +E ++ ++ +++L    F++  ++ +      + GV+ DLGVSS+Q+D  +RGF+F
Sbjct: 61  QEIAKERLKAFEGRYNLLSGGFAKRFKEALETHDKEIKGVLVDLGVSSLQLDDDNRGFNF 120

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
             S  LDMRM    G++A  V+N   V  L +I    GE K+  +IAH I +RR   PF+
Sbjct: 121 -HSHALDMRMDLEGGLNAQKVINSYPVVALEKIFKDYGEIKEYKKIAHKIAERRAKKPFK 179

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
             +DLS  +     FSKN +IHPAT  FQA+RI VN E+EEL + L+ A      G +L 
Sbjct: 180 DAKDLSDFLSS---FSKNKKIHPATLVFQAVRIEVNRELEELKEFLQCARNL--KGAILC 234

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           V+SFHSLED LVK  F   +   +          + + A+ + +TKK + P+ E++  NR
Sbjct: 235 VISFHSLEDALVKNAFKDYAKNCICDPLSFKCACSNNHALGEILTKKPITPSPEEIKNNR 294

Query: 305 RSRSAKLRAGM 315
           RSRSAK+R   
Sbjct: 295 RSRSAKMRVFQ 305


>gi|163787483|ref|ZP_02181930.1| S-adenosyl-methyltransferase MraW [Flavobacteriales bacterium
           ALC-1]
 gi|159877371|gb|EDP71428.1| S-adenosyl-methyltransferase MraW [Flavobacteriales bacterium
           ALC-1]
          Length = 298

 Score =  322 bits (827), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 103/305 (33%), Positives = 160/305 (52%), Gaps = 17/305 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H  VLL + +  L+  P  V +D TFG GG+SR           + A D+D  A++   +
Sbjct: 4   HNAVLLIETVDGLDIKPNGVYVDVTFGGGGHSREILSRLGPNGKLYAFDQDKDALANTID 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                 E+F L    F  ++ ++   GV   DGV+ D GVSS Q D  +RGFS +    L
Sbjct: 64  -----DERFVLINENFRYIKRFLRFYGVKEVDGVLADFGVSSHQFDVAERGFSTRFEADL 118

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  S ISA  VVN  + + +  +L   GE +Q+  +A  IV  R     +T++ L 
Sbjct: 119 DMRMNQDSKISAYQVVNNYSEEQIKNVLLQYGELRQSPAMARVIVTERAREEIKTSEQLK 178

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +++  +   K N++    + +QA+RI VN EIE L + L    + LK GG L  +S+HS
Sbjct: 179 KVLKPFLNHKKENKV--LAQIYQAIRIEVNQEIEVLKELLLQTPEILKEGGRLSFISYHS 236

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDRLVK+F  +   +    R M  +   P   + +  K+++P++ ++  N R+RSAKLR
Sbjct: 237 LEDRLVKRFIRNGLFEGEPERDMFGNFEVP--LRKV-GKLIIPSRLEIKINNRARSAKLR 293

Query: 313 AGMRT 317
              + 
Sbjct: 294 IAEKI 298


>gi|311086539|gb|ADP66620.1| S-adenosyl-methyltransferase MraW [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
          Length = 302

 Score =  322 bits (827), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 118/305 (38%), Positives = 182/305 (59%), Gaps = 19/305 (6%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRD 80
           + +++I  L      + +D+TFG GG+S    K       + ++DRDP A S G +    
Sbjct: 1   MKKELIDSLKIKKNGIYIDSTFGTGGHSNEILKKLGQSGRLYSIDRDPIAFSIGSKI--- 57

Query: 81  YKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
              +F +    FS+L D+  ++     V+G++FDLGVSS+QID   RGFSF+  GPLDMR
Sbjct: 58  KDSRFHIINENFSKLLDFAKNEKIIGKVNGIIFDLGVSSIQIDDYRRGFSFKNDGPLDMR 117

Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M+ + GISAS+ + ++NVK+++ +L   GEE+ + +IA+AI +R Q     +T +L+++I
Sbjct: 118 MNPNYGISASEWLFESNVKEISFVLKNFGEERFSRKIAYAIKRRSQIKKITSTLELANII 177

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           +KT+   KN   HPA RSFQA+RI++N E+EE+ + L S  K LK GG + ++SFHSLED
Sbjct: 178 KKTIPT-KNKFKHPARRSFQAIRIYINQELEEIQKALESTLKILKPGGRISIISFHSLED 236

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           RLVKKF    S K +    M  +            + I +  ++PTQ ++  N R+RS+ 
Sbjct: 237 RLVKKFMIKNSTKAIIPYGMPITEEQLNRLTTCKLKIINR--ILPTQNEINNNPRARSSV 294

Query: 311 LRAGM 315
           LR   
Sbjct: 295 LRIAE 299


>gi|167972765|ref|ZP_02555042.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 5
           str. ATCC 27817]
 gi|167973620|ref|ZP_02555897.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar
           11 str. ATCC 33695]
 gi|167975916|ref|ZP_02558193.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar
           12 str. ATCC 33696]
 gi|167987809|ref|ZP_02569480.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|168363028|ref|ZP_02696202.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar
           13 str. ATCC 33698]
 gi|195867888|ref|ZP_03079887.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 9
           str. ATCC 33175]
 gi|198273780|ref|ZP_03206314.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 4
           str. ATCC 27816]
 gi|225550865|ref|ZP_03771814.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
 gi|225551533|ref|ZP_03772479.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 8
           str. ATCC 27618]
 gi|171903084|gb|EDT49373.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar
           13 str. ATCC 33698]
 gi|184209218|gb|EDU06261.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 5
           str. ATCC 27817]
 gi|188019063|gb|EDU57103.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|188998230|gb|EDU67327.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar
           11 str. ATCC 33695]
 gi|195659727|gb|EDX53107.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar
           12 str. ATCC 33696]
 gi|195660465|gb|EDX53723.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 9
           str. ATCC 33175]
 gi|198249535|gb|EDY74317.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 4
           str. ATCC 27816]
 gi|225379348|gb|EEH01713.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 8
           str. ATCC 27618]
 gi|225380019|gb|EEH02381.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
          Length = 308

 Score =  322 bits (827), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 103/310 (33%), Positives = 157/310 (50%), Gaps = 12/310 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI---ALDRDPFAVS 72
               H  VLL + I LL+  P  + +D TFG GG+S+   K  S       +D+D  A+ 
Sbjct: 2   EFNQHTTVLLNETIELLHVKPDGIYVDCTFGRGGHSQLILKKLSKKGKLICIDQDQQAID 61

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQK 129
                 +D      + +  F  L+  + D     VDG VFDLG+SS Q+D  +RGFS+ K
Sbjct: 62  FANNLFKD-NPNVIVIKTNFKNLKSVLYDHQIFHVDGFVFDLGLSSPQLDDPERGFSYHK 120

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
              LDMRM     ++A  +VN  +   L  I    GE K A  IA+ IVK R +    TT
Sbjct: 121 DALLDMRMDQEQKLNAHYIVNHYSFAKLVNIFTKYGEIKYAKTIANGIVKERSTKAINTT 180

Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L  +I+          + HPA   FQA+RI VN+E+  L +    A   L   G++ +
Sbjct: 181 LELVEIIKNYSPKKILFEKKHPARLFFQAIRIEVNDELNILEKAFNDAISMLNPLGVVAI 240

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +SFHSLED++VKK F + +   +     IP N +   +  + +K ++P+ +++  N RSR
Sbjct: 241 ISFHSLEDKIVKKVFNNYAKNKLP--KEIPLNNYVNQYSLLNQK-IMPSTQELNDNNRSR 297

Query: 308 SAKLRAGMRT 317
           S+ LR  ++ 
Sbjct: 298 SSILRGLVKN 307


>gi|119505128|ref|ZP_01627204.1| S-adenosyl-methyltransferase [marine gamma proteobacterium
           HTCC2080]
 gi|119459110|gb|EAW40209.1| S-adenosyl-methyltransferase [marine gamma proteobacterium
           HTCC2080]
          Length = 307

 Score =  322 bits (827), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 119/309 (38%), Positives = 168/309 (54%), Gaps = 12/309 (3%)

Query: 18  GDHVPVLLEKVIALLNPAPGK----VILDATFGAGGYSRSFCKM---GSNVIALDRDPFA 70
           G H  VLLE+ +  L    G     V +D TFG GG+S +  ++   G  ++A D+DP A
Sbjct: 3   GMHQAVLLEEAVEALMAGAGGTGSEVYVDGTFGRGGHSAAILRVLSDGQRLVAFDKDPEA 62

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           +      +      FS    +F  L+      G+ GV+ DLGVSS Q+D G RGFSFQ+ 
Sbjct: 63  MESA-RLLSSENPAFSFLHDSFGNLER--AGSGLAGVLLDLGVSSPQLDDGSRGFSFQQQ 119

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
           GPLDMRM  S G +A++ +N A+  DL R+L   GEEK A RI  A+VKRR   PF+ T+
Sbjct: 120 GPLDMRMDNSKGETAAEFINSASEADLRRVLWDFGEEKFARRIVSALVKRRMVEPFERTE 179

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           DL++++       + ++ HPATR+FQALRI VN E+ +L   L      L  GG L+V+S
Sbjct: 180 DLAAVVAAANPAWEKHK-HPATRTFQALRIHVNRELADLDILLGKVIDLLAVGGRLVVIS 238

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDR VK F    +      R +   +        +  K    + +++A N R+RSA
Sbjct: 239 FHSLEDRRVKTFMRREARGRELPRGVPIRDDERGERLRLLGKPRRASDDELAANPRARSA 298

Query: 310 KLRAGMRTV 318
            +R   R  
Sbjct: 299 IMRVAERIA 307


>gi|121613568|ref|YP_001000389.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|167005332|ref|ZP_02271090.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|263445762|sp|A1VZ48|RSMH_CAMJJ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|87249530|gb|EAQ72490.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp.
           jejuni 81-176]
          Length = 310

 Score =  322 bits (826), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 101/302 (33%), Positives = 159/302 (52%), Gaps = 9/302 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76
            H+PVLL +V  +         LD T G GG+S +  K   ++  IA D+D  A+   ++
Sbjct: 4   PHIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKNHPDLKFIACDQDQQALEFSKK 63

Query: 77  TMRDYKEQFSLFQATFSQ-LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
            ++D+  + +  Q+ FS+ L+     + + G++ D+GVSS Q+D  +RGFS      LDM
Sbjct: 64  RLKDFHNRITFVQSNFSEVLEKISHKEELRGILADIGVSSFQLDNNERGFSVNSD-FLDM 122

Query: 136 RMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM+  S ISA +++N    + LT I    GE   A  IA  I   R   P ++ ++L  +
Sbjct: 123 RMNQNSKISAYEIINTYTKEQLTSIFKDYGELHDAHFIAEKICLERSKNPIKSAKELYQI 182

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           I K      + +I  AT +FQA+RI VN E++ L   L   E       +L ++SFHSLE
Sbjct: 183 IGK--GKQNHRKISKATLAFQAIRIEVNQELKVLKDFLEHLENLKPKNCILAIISFHSLE 240

Query: 255 DRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           DR+VK+FF   S   +    +       + ++ Q ITKK +  ++E++  N RS  AK+R
Sbjct: 241 DRIVKQFFKKWSKNCICNEKIMRCECGNNHSLGQIITKKAISASKEELLKNSRSSCAKMR 300

Query: 313 AG 314
           A 
Sbjct: 301 AF 302


>gi|293363236|ref|ZP_06610120.1| S-adenosyl-methyltransferase MraW [Mycoplasma alligatoris A21JP2]
 gi|292553095|gb|EFF41844.1| S-adenosyl-methyltransferase MraW [Mycoplasma alligatoris A21JP2]
          Length = 302

 Score =  322 bits (826), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 113/307 (36%), Positives = 163/307 (53%), Gaps = 16/307 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H  VLLE+ I  LN  P  + +D T G GG+S    +  +    +IA D+D +A+   Q 
Sbjct: 5   HYSVLLEETIKSLNLQPDGIYVDLTLGMGGHSAKILEKLNKNGMLIAFDKDDYALEISQR 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +    ++F L ++ +SQL+  + +     VDG++ DLG+SS QID  +RGFS+ K   L
Sbjct: 65  RLSSISDKFILIKSDYSQLKSQLANHNIYKVDGIIADLGISSPQIDNANRGFSYNKDAKL 124

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  S  + A  VVN  +V+ L  I     + K AS++A AI K R   P  +T  L 
Sbjct: 125 DMRMDTSQELDAEIVVNTYSVEHLRDIFLKYADVKHASQVAKAIEKNR---PIVSTMQLV 181

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I+     +     +PA   FQALRI VNNE+  L   L  A   LK    L +++FHS
Sbjct: 182 EVIKSAYPAALLRAKNPAKAVFQALRIEVNNELYSLKTMLDDAVSLLKTNASLSIITFHS 241

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           +EDRLVK  FAS +   +  +  I   A    F S   K V P+  ++  N+RSRSAKLR
Sbjct: 242 IEDRLVKHKFASLTASKIPAKMPI---ADKKTFLS---KQVKPSSNEIQENKRSRSAKLR 295

Query: 313 AGMRTVE 319
              + ++
Sbjct: 296 ILTKILD 302


>gi|311085963|gb|ADP66045.1| S-adenosyl-methyltransferase MraW [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
          Length = 302

 Score =  322 bits (826), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 117/305 (38%), Positives = 182/305 (59%), Gaps = 19/305 (6%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRD 80
           + +++I  L      + +D+TFG GG+S    K       + ++DRDP A S G +    
Sbjct: 1   MKKELIDSLKIKKNGIYIDSTFGTGGHSNEILKKLGQSGRLYSIDRDPIAFSIGSKI--- 57

Query: 81  YKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
              +F +    FS+L D+  ++     V+G++FDLGVSS+QID   RGFSF+  GPLDMR
Sbjct: 58  KDSRFHIINENFSKLLDFAKNEKIIGKVNGIIFDLGVSSIQIDDYRRGFSFKNDGPLDMR 117

Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M+ + GISAS+ + ++N+K+++ +L   GEE+ + +IA+AI +R Q     +T +L+++I
Sbjct: 118 MNPNYGISASEWLFESNIKEISFVLKNFGEERFSRKIAYAIKRRSQIKKITSTLELANII 177

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           +KT+   KN   HPA RSFQA+RI++N E+EE+ + L S  K LK GG + ++SFHSLED
Sbjct: 178 KKTIPT-KNKFKHPARRSFQAIRIYINQELEEIQKALESTLKILKPGGRISIISFHSLED 236

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAH-----PAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           RLVKKF    S K +    M  +            + I +  ++PTQ ++  N R+RS+ 
Sbjct: 237 RLVKKFMIKNSTKAIIPYGMPITEEQLNRLTTCKLKIINR--ILPTQNEINNNPRARSSV 294

Query: 311 LRAGM 315
           LR   
Sbjct: 295 LRIAE 299


>gi|296273435|ref|YP_003656066.1| S-adenosyl-methyltransferase MraW [Arcobacter nitrofigilis DSM
           7299]
 gi|296097609|gb|ADG93559.1| S-adenosyl-methyltransferase MraW [Arcobacter nitrofigilis DSM
           7299]
          Length = 300

 Score =  322 bits (826), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 98/301 (32%), Positives = 159/301 (52%), Gaps = 12/301 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76
            H+PVL ++ + +        I+D T G  G+S    K  SN  +I  D+D  A+   ++
Sbjct: 4   PHIPVLYKETLGVFENIDSGYIIDCTLGYAGHSEGLLKQNSNVKLICNDQDNEALEFSKK 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
            +  +  + +  +  F  + +   +  + G++ D+GVSS+Q+D  DRGF F     LDMR
Sbjct: 64  RLEPFLNRATFNKGNFETVLNSFKEYDIRGILADIGVSSLQLDKEDRGFGFDSES-LDMR 122

Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M+    + AS VVN  +  +L R+    GE K+  ++A  IV  R   PF + ++LS+ I
Sbjct: 123 MNQEQSLDASVVVNTYSQSELERVFKECGEVKEYKKVASLIVNNR---PFTSAKELSTFI 179

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
            K ++     ++H AT  FQ +RI VN+E+  L +   S E+      L+ ++SFHSLED
Sbjct: 180 AKNMH---KGKLHAATLPFQGIRIEVNDELGVLERLFDSIEELKPKNCLIAIISFHSLED 236

Query: 256 RLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           R+VK +F   S   +    +         A+ + ITKK ++PT E++  N RSRS+KLR 
Sbjct: 237 RIVKNYFKKWSKNCICPSDVMRCTCGNDNALGKIITKKPIIPTNEEIKVNPRSRSSKLRV 296

Query: 314 G 314
            
Sbjct: 297 F 297


>gi|194335059|ref|YP_002016919.1| S-adenosyl-methyltransferase MraW [Prosthecochloris aestuarii DSM
           271]
 gi|262824884|sp|B4S6R7|RSMH_PROA2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|194312877|gb|ACF47272.1| S-adenosyl-methyltransferase MraW [Prosthecochloris aestuarii DSM
           271]
          Length = 333

 Score =  322 bits (826), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 111/318 (34%), Positives = 171/318 (53%), Gaps = 21/318 (6%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--------VIALDRDPF 69
           G H+PV++ +V  LL   P  + +D T G GG++ S               +I +D+D F
Sbjct: 5   GYHLPVMVSEVTDLLARRP-GIYIDGTLGGGGHAFSVMSALRRSGFENDSLLIGIDQDSF 63

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK--------GVDGVVFDLGVSSMQIDCG 121
           A+      +R +  +  L +  FS++   +            V G++ DLGVSS QID  
Sbjct: 64  ALEEAAGRLRPFASRVRLERGNFSEMAAIIERIRLREGCRLPVMGILLDLGVSSFQIDTP 123

Query: 122 DRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR- 179
           DRGFS+ + GPLDMRM   G  SA+D+VN A   +L  I+   GEEK++  IA AI  R 
Sbjct: 124 DRGFSYLRQGPLDMRMDPDGGWSAADIVNTAEESELAGIIYRYGEEKKSRAIARAIKARV 183

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
           R+   F+ T +L+++++  V    + +I   +R FQALRI VN+E+  L   L      L
Sbjct: 184 REKGDFRETAELAAVVRSVV-AGHDRQIKSLSRVFQALRIAVNDELGVLESALEDGTACL 242

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQE 298
              G + V+S+HSLEDR+VK+FF  +S      + + +      A F+ +T+K VV + +
Sbjct: 243 APSGRMGVMSYHSLEDRMVKRFFRDKSEDDWGPKGVGLREPLRSAGFKLVTRKSVVASDD 302

Query: 299 DVAFNRRSRSAKLRAGMR 316
           +V  N R+RSA+LR   +
Sbjct: 303 EVRINPRARSARLRVIEK 320


>gi|62184992|ref|YP_219777.1| S-adenosyl-methyltransferase MraW [Chlamydophila abortus S26/3]
 gi|68565433|sp|Q5L6B5|RSMH_CHLAB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|62148059|emb|CAH63812.1| putative S-adenosyl-methyltransferase [Chlamydophila abortus S26/3]
          Length = 298

 Score =  322 bits (826), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 111/308 (36%), Positives = 158/308 (51%), Gaps = 20/308 (6%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI---ALDRDPFAV 71
                H+PVL+ + ++L      K   D T GAGG++ +F     +++   A DRD  A+
Sbjct: 2   SATPSHIPVLVNECLSLFADRHPKFFCDVTVGAGGHAEAFLSAYPSIVSYDASDRDVAAL 61

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ-KS 130
           S  +E +  + ++     A+F  L     +   DG++ DLGVSSMQ+D   RGFSFQ   
Sbjct: 62  SMAKEHLEKFGDRVHFHHASFEDLSKDPREHVYDGILADLGVSSMQLDNLSRGFSFQGDD 121

Query: 131 GPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM    GI+AS+V++    ++L +I    GEE Q    A AIV  R+     T +
Sbjct: 122 HALDMRMDVTKGITASEVLHTLREEELGKIFREYGEEPQWKNAAKAIVHFRRRKKIVTVR 181

Query: 190 DLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           DL     K     +   +IHP T  FQALR++VN E  +L   L SA + L  GG LI++
Sbjct: 182 DLKEATAKVFPSYRLRKKIHPLTLIFQALRVYVNQEDVQLKVLLESAMRWLAPGGRLIII 241

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SF S EDR VK FF       + +               +TKKV++PT E++  N R RS
Sbjct: 242 SFCSSEDRPVKWFFREAEKSGLGM--------------ILTKKVIMPTYEEIRKNPRCRS 287

Query: 309 AKLRAGMR 316
           AKLR   +
Sbjct: 288 AKLRCFEK 295


>gi|149409519|ref|XP_001510902.1| PREDICTED: similar to androgen receptor associated coregulator
           267-b [Ornithorhynchus anatinus]
          Length = 436

 Score =  322 bits (825), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 132/335 (39%), Positives = 182/335 (54%), Gaps = 38/335 (11%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVSCGQET 77
           HVPV++ +V+  L P  G+ ILD TFG+GG++R+    + G  + ALDRDP A    Q+ 
Sbjct: 101 HVPVMVNEVVNCLAPQQGQSILDMTFGSGGHARAILHKEPGITLYALDRDPSAYKIAQQL 160

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            + Y  Q       FSQ +  +   GV     DGV+ DLG SSMQ+D  +RGFS +K GP
Sbjct: 161 SQTYPNQVRALLGQFSQAETLLLSAGVQPESLDGVLLDLGCSSMQLDTPERGFSLRKDGP 220

Query: 133 LDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           LDMRM         +A DVVN  + + LT IL   GEE+ A +IA AIV+ R   P   T
Sbjct: 221 LDMRMDSGRYPDLPTAGDVVNALDQQALTSILRTYGEERHAKKIASAIVQARTIYPITRT 280

Query: 189 QDLSSLIQKTVY----FSKN----NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           Q L+S++         +++        H AT++FQA+RIFVN+E+ EL  GL++A+K L+
Sbjct: 281 QQLASIVAGAFPDSALYARKDLLQRSTHIATKTFQAIRIFVNDELNELYAGLKTAQKFLR 340

Query: 241 AGGLLIVVSFHSLEDRLVKKFF-------------------ASRSGKVMAVRHMIPSNAH 281
            GG L+ +SFHSLEDR+VK+F                      R            S+  
Sbjct: 341 PGGRLVALSFHSLEDRVVKRFLFKIDITEKFNLSRRKKITQVQRGNVDRENEEESSSDMS 400

Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
              +Q I KKV+ P  +DV  N R RSAKLRA ++
Sbjct: 401 HPEWQMIHKKVLTPDTQDVQENPRGRSAKLRAAIK 435


>gi|209554330|ref|YP_002284822.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar
           10 str. ATCC 33699]
 gi|263504480|sp|B5ZBN2|RSMH_UREU1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|209541831|gb|ACI60060.1| S-adenosyl-methyltransferase MraW [Ureaplasma urealyticum serovar
           10 str. ATCC 33699]
          Length = 308

 Score =  322 bits (825), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 103/310 (33%), Positives = 157/310 (50%), Gaps = 12/310 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI---ALDRDPFAVS 72
               H  VLL + I LL+  P  + +D TFG GG+S+   K  S       +D+D  A+ 
Sbjct: 2   EFNQHTTVLLNETIELLHVKPDGIYVDCTFGRGGHSQLILKKLSKKGKLICIDQDQQAID 61

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQK 129
                 +D      + +  F  L+  + D     VDG VFDLG+SS Q+D  +RGFS+ K
Sbjct: 62  FANNLFKD-NPNVIVIKTNFKNLKSVLYDHQIFHVDGFVFDLGLSSPQLDDPERGFSYHK 120

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
              LDMRM     ++A  +VN  +   L  I    GE K A  IA+ IVK R +    TT
Sbjct: 121 DALLDMRMDQEQKLNAHYIVNHYSFAKLVNIFTKYGEIKYAKTIANGIVKERSTKAINTT 180

Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            +L  +I+          + HPA   FQA+RI VN+E+  L +    A   L   G++ +
Sbjct: 181 LELVEIIKNYSPKKILFEKKHPARLFFQAIRIEVNDELNILKKAFNDAISMLNPLGVVAI 240

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +SFHSLED++VKK F + +   +     IP N +   +  + +K ++P+ +++  N RSR
Sbjct: 241 ISFHSLEDKIVKKVFNNYAKNKLP--KEIPLNNYVNQYSLLNQK-IMPSTQELNDNNRSR 297

Query: 308 SAKLRAGMRT 317
           S+ LR  ++ 
Sbjct: 298 SSILRGLVKN 307


>gi|255325352|ref|ZP_05366458.1| S-adenosyl-methyltransferase MraW [Corynebacterium
           tuberculostearicum SK141]
 gi|255297917|gb|EET77228.1| S-adenosyl-methyltransferase MraW [Corynebacterium
           tuberculostearicum SK141]
          Length = 346

 Score =  322 bits (825), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 112/330 (33%), Positives = 175/330 (53%), Gaps = 23/330 (6%)

Query: 10  SSAIHHTIGD---HVPVLLEKVIALLNPA-----PGKVILDATFGAGGYSRSFCKMGS-- 59
           +  +++ + +   HVPV+ E++  LL P         V++DAT GAGG++R F +     
Sbjct: 3   TKDLNYDVAENHGHVPVMRERMADLLRPQVEAAGDKAVLVDATLGAGGHTRYFLESFPKA 62

Query: 60  NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD-----------KGVDGVV 108
            VI +DRD  A+    E +  Y ++F    A F +L   + +            G+ G +
Sbjct: 63  RVIGVDRDKQALRNATERLAPYGDRFVGVNARFDELGSAIAEGEGDIFDSARTVGIAGAL 122

Query: 109 FDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEK 167
           FDLGVSSMQ+D  DRGF+++   PLDMRM  S GI+A+DV+N     DL R+L   G+E+
Sbjct: 123 FDLGVSSMQLDQADRGFAYKADAPLDMRMDPSQGITAADVLNTYTHGDLARVLKTYGDER 182

Query: 168 QASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIE 226
            A +IA A++K R   PF+ +  L  L+   +  + +    HPA R+FQALR+ VN E+E
Sbjct: 183 FAGKIASAVLKERDKEPFENSARLVELLYDVIPAATRRTGGHPAKRTFQALRVEVNRELE 242

Query: 227 ELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ 286
            +   L    +AL  GG  + +S+ SLEDR+VK  F   +         +        F+
Sbjct: 243 AIENVLPVITQALSEGGRAVFMSYQSLEDRIVKAAFKELTTSKTPAGLPMDLPGTAPKFK 302

Query: 287 SITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
            +T+     ++E+V  N R+ S ++RA  R
Sbjct: 303 IVTRGAEKASEEEVTENSRAASVRVRAIER 332


>gi|300309670|ref|YP_003773762.1| S-adenosyl-methionine-dependent methyltransferase MraW protein
           [Herbaspirillum seropedicae SmR1]
 gi|300072455|gb|ADJ61854.1| S-adenosyl-methionine-dependent methyltransferase MraW protein
           [Herbaspirillum seropedicae SmR1]
          Length = 324

 Score =  322 bits (825), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 113/308 (36%), Positives = 174/308 (56%), Gaps = 18/308 (5%)

Query: 20  HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSC 73
           H  VLLE+ +  L         V LD TFG GG+SR+          +IA D+DP A++ 
Sbjct: 11  HRTVLLEEAVDALAIEGERANGVYLDGTFGRGGHSRAILSRLGPQGRLIAFDKDPLAIAT 70

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            Q+       +F +   +F+ +   + ++G   VDGV+ DLG+SS Q+D   RGFSF+  
Sbjct: 71  AQKIA---DPRFEIVHDSFATMDQALAERGIARVDGVLMDLGISSPQVDDAARGFSFRLD 127

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
           GPLDMRM  + G+SA++ +  A+ + + +++   GEE+ A +IA  IV  R   P  +T+
Sbjct: 128 GPLDMRMDTTRGVSAAEWLATADEQQIAKVIRDYGEERFALQIAKKIVAGRAVEPISSTR 187

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            L++L+ + V   +     PATR+FQA+RIFVN E+EEL  GL  A   +   G L+V+S
Sbjct: 188 QLAALVAQAVKT-REKGKDPATRTFQAVRIFVNQELEELEVGLEKAFAQMAQHGRLVVIS 246

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPS--NAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           FHSLEDR+VK+F AS++      R +     +   A  + + +  V+P+  +V  N R+R
Sbjct: 247 FHSLEDRIVKQFMASKAHAPQPDRRLPIRAVDLPQAPARLLPR--VMPSAGEVEANPRAR 304

Query: 308 SAKLRAGM 315
           SA +R   
Sbjct: 305 SAVMRGLE 312


>gi|183602416|ref|ZP_02963782.1| S-adenosyl-methyltransferase [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219683269|ref|YP_002469652.1| S-adenosyl-methyltransferase MraW [Bifidobacterium animalis subsp.
           lactis AD011]
 gi|241191230|ref|YP_002968624.1| S-adenosyl-methyltransferase MraW [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|241196636|ref|YP_002970191.1| S-adenosyl-methyltransferase MraW [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|263445932|sp|C6A8W4|RSMH_BIFLB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263445940|sp|C6AJH2|RSMH_BIFAS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263447580|sp|B8DSU7|RSMH_BIFA0 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|183218335|gb|EDT88980.1| S-adenosyl-methyltransferase [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219620919|gb|ACL29076.1| S-adenosyl-methyltransferase MraW [Bifidobacterium animalis subsp.
           lactis AD011]
 gi|240249622|gb|ACS46562.1| S-adenosyl-methyltransferase [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|240251190|gb|ACS48129.1| S-adenosyl-methyltransferase [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|289177346|gb|ADC84592.1| MraW [Bifidobacterium animalis subsp. lactis BB-12]
 gi|295794223|gb|ADG33758.1| S-adenosyl-methyltransferase [Bifidobacterium animalis subsp.
           lactis V9]
          Length = 353

 Score =  322 bits (825), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 107/307 (34%), Positives = 160/307 (52%), Gaps = 11/307 (3%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCG 74
           H PVLL++ + L+ PA      V +D T G  G++ +F K   N  VI +DRD  A+   
Sbjct: 8   HKPVLLQECVDLVTPALHASDSVAVDCTLGLAGHTIAFLKAAPNATVIGIDRDEEALDKA 67

Query: 75  QETMRDYK--EQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQK 129
              +       +F    A F Q  + +  +GV     V  DLG+SS+QID  +RGFS+  
Sbjct: 68  TARIAQEGLSARFVPVHAAFDQFDEVLRAQGVSRVQAVFMDLGLSSLQIDERERGFSYAH 127

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM  S  ++A +++   +   L  I    GEE+ +  IA  IV++RQS+P +T+
Sbjct: 128 DAPLDMRMDTSQALTAREILATYDADRLAHIFKEYGEERFSKPIAKRIVQQRQSSPLETS 187

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L++L+   +  ++    +PA R FQALRI VN E+++L + L      L  GG L+V 
Sbjct: 188 SQLTALVDAVIPAARRGSGNPAKRVFQALRIEVNGELDKLRRTLPQIGLHLAVGGRLVVE 247

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           S+HSLEDR VK F A            +        F+++TK  V     ++A+N RS S
Sbjct: 248 SYHSLEDRTVKNFMAQGLRVDAPADMPVIPPDMQPFFKALTKGAVKADAGEIAYNPRSAS 307

Query: 309 AKLRAGM 315
            +LRA  
Sbjct: 308 VRLRAVE 314


>gi|224372899|ref|YP_002607271.1| S-adenosyl-methyltransferase MraW [Nautilia profundicola AmH]
 gi|262825192|sp|B9L9G3|RSMH_NAUPA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|223589436|gb|ACM93172.1| S-adenosyl-methyltransferase MraW [Nautilia profundicola AmH]
          Length = 306

 Score =  322 bits (825), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 101/304 (33%), Positives = 164/304 (53%), Gaps = 15/304 (4%)

Query: 19  DHVPVLLEKVIALLNPAP-GKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQ 75
            H+PVLL + I L N  P     +D T G GG+S +  +   N  +I +D+D  A+   +
Sbjct: 7   PHIPVLLNETIGLYNDMPENGYFIDCTLGFGGHSEAILEKYPNIKLIGIDQDAEAMHFAK 66

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK-GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
             +  + ++        S   + +P+   V G++ D+GVSS Q+D  +RGF+F+    LD
Sbjct: 67  NRLARFGDRVQFINKRASSALEELPEDLPVSGILADIGVSSYQLDNKERGFTFESEE-LD 125

Query: 135 MRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM      SA DVVN  + +DL RI+   GE ++  ++  AI+ +R   P ++ ++L+ 
Sbjct: 126 MRMDKTQDFSAKDVVNFYSKEDLERIIKNYGECRRFKKVVSAIISKR---PIKSNRELAD 182

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           ++       K        + FQA+RI VNNE+ EL + L++A+K  K G +L +++FHSL
Sbjct: 183 ILGHIGLRDK----KDLAKIFQAIRIEVNNELNELEKILKNAKKLAKNGTILGIITFHSL 238

Query: 254 EDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           EDR+VK  F   S K +            +  + + +TKK +V ++E++  N RSRSAKL
Sbjct: 239 EDRIVKNTFKEWSKKCICPPEAIRCECGGNNQLGKILTKKPLVASKEEIKMNPRSRSAKL 298

Query: 312 RAGM 315
           R   
Sbjct: 299 RGFQ 302


>gi|315926807|gb|EFV06181.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp.
           jejuni DFVF1099]
          Length = 310

 Score =  322 bits (825), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 101/302 (33%), Positives = 160/302 (52%), Gaps = 9/302 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76
            H+PVLL +V  +         LD T G GG+S +  K   ++  IA D+D  A+   ++
Sbjct: 4   PHIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKNHPDLKFIACDQDQQALEFSKK 63

Query: 77  TMRDYKEQFSLFQATFSQ-LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
            ++D++ + +  Q+ FS+ L+     + + G++ D+GVSS Q+D  +RGFS      LDM
Sbjct: 64  RLKDFRNRITFMQSNFSEVLEKISHKEELRGILADIGVSSFQLDNNERGFSVNSD-FLDM 122

Query: 136 RMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM+  S ISA +++N    + LT I    GE   A  IA  I   R   P ++ ++L  +
Sbjct: 123 RMNQNSKISAYEIINTYTKEQLTSIFKDYGELHDAHFIAEKICLERSKNPIKSAKELYQI 182

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           I K      + +I  AT +FQA+RI VN E++ L   L   E       +L ++SFHSLE
Sbjct: 183 IGK--GKQNHRKISKATLAFQAIRIEVNQELKVLKDFLEHLENLKPKNCILAIISFHSLE 240

Query: 255 DRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           DR+VK+FF   S   +    +       + ++ Q ITKK +  ++E++  N RS  AK+R
Sbjct: 241 DRIVKQFFKKWSKNCICNEKIMRCECGNNHSLGQIITKKAISASKEELLKNSRSSCAKMR 300

Query: 313 AG 314
           A 
Sbjct: 301 AF 302


>gi|308063505|gb|ADO05392.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori Sat464]
          Length = 308

 Score =  322 bits (825), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 114/304 (37%), Positives = 175/304 (57%), Gaps = 14/304 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H  VLL++V+    P    V++D T G GG+S++      +  +I +D+D FA    +E 
Sbjct: 8   HQSVLLQEVLQAFAPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFAQEIAKER 67

Query: 78  MRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++ ++ +++L    F++  ++ +      + GV+ DLGVSS+Q+D  +RGF+F  S  LD
Sbjct: 68  LKAFEGRYNLLSGGFAKRFKEALETHNKEIKGVLVDLGVSSLQLDDDNRGFNF-HSHALD 126

Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM   SG++A  V+N   V  L +I    GE K+  +IAH I +RR   PF+  +DLS 
Sbjct: 127 MRMDLESGLNAQKVINSYPVVALEKIFKGYGEIKEYKKIAHKIAERRAKKPFKDAKDLSD 186

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
            +      SKN +IHPAT  FQA+RI VN+E+EEL + L+ A      G +L V+SFHSL
Sbjct: 187 FLSS---LSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCARNL--KGAILCVISFHSL 241

Query: 254 EDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           ED LVK  F   +   +          + + A+ + +TKK + P+ E++  NRRSRSAK+
Sbjct: 242 EDALVKNAFKDYAKNCICDPLSFKCTCSNNHALGEILTKKPITPSPEEIKNNRRSRSAKM 301

Query: 312 RAGM 315
           RA  
Sbjct: 302 RAFQ 305


>gi|210134911|ref|YP_002301350.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori P12]
 gi|226709920|sp|B6JLU2|RSMH_HELP2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|210132879|gb|ACJ07870.1| S-adenosyl-methyltransferase [Helicobacter pylori P12]
          Length = 308

 Score =  322 bits (825), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 114/304 (37%), Positives = 176/304 (57%), Gaps = 14/304 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H  VLL++V+    P    V++D T G GG+S++      +  +I +D+D FA    +E 
Sbjct: 8   HQSVLLQEVLQAFAPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFAQEIAKER 67

Query: 78  MRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++ ++ +++L    F++  ++ +   G  + GV+ DLGVSS+Q+D  +RGF+F  S  LD
Sbjct: 68  LKAFEGRYNLLSGGFAKRFKEALEMHGERIKGVLVDLGVSSLQLDDDNRGFNF-HSHALD 126

Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM   S ++A  V+N  +V  L +I    GE K+  +IAH I +RR   PF+  +DLS 
Sbjct: 127 MRMDLESDLNAQKVINSYSVVALEKIFRDYGEIKEYKKIAHKIAERRAKKPFKDAKDLSD 186

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
            +     FSKN +IHPAT  FQA+RI VN+E+EEL + L+ A      G +L V+SFHSL
Sbjct: 187 FLSS---FSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCARNL--KGAILCVISFHSL 241

Query: 254 EDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           ED LVK  F   +   +          + + A+   +TKK ++P+ E++  NRRSRSAK+
Sbjct: 242 EDALVKNAFKDYAKNCICDPSSFKCTCSNNHALGTILTKKPIIPSPEEIKNNRRSRSAKM 301

Query: 312 RAGM 315
           R   
Sbjct: 302 RVFQ 305


>gi|255020004|ref|ZP_05292077.1| S-adenosyl-methyltransferase MraW [Acidithiobacillus caldus ATCC
           51756]
 gi|254970533|gb|EET28022.1| S-adenosyl-methyltransferase MraW [Acidithiobacillus caldus ATCC
           51756]
          Length = 324

 Score =  322 bits (825), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 116/326 (35%), Positives = 180/326 (55%), Gaps = 14/326 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNP---APG-KVILDATFGAGGYSRSF---CKMGSNV 61
           M+ A   T   H PVLL +V+A   P    PG ++ +DAT G GG+S +          +
Sbjct: 1   MTDA-QDTDTSHQPVLLAEVLAACTPLLGQPGPRLWVDATGGRGGHSAALAHLLGAQDRL 59

Query: 62  IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQI 118
           + LDRDP A++  +    +  E+ S+ QA FS++   + + G      ++ DLGVSS Q+
Sbjct: 60  LVLDRDPGAIAFLRTRFAE-DERVSVRQAEFSRVAQVLAEMGTGQAQFILADLGVSSPQL 118

Query: 119 DCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177
           D  +RGFSF + GPLDMRM+   G+SA+  +  A   ++ ++L   GEE++A RIA AIV
Sbjct: 119 DRPERGFSFLRDGPLDMRMNPEQGMSAAQWLATAEAAEIAQVLRDYGEEREARRIARAIV 178

Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
           + R   P   T  L+ L+   +  ++   IHPATR+FQA+R+ +N+E+ E+   L +A  
Sbjct: 179 RERAVRPLTRTTQLAELVAGLLPRARAQAIHPATRTFQAIRMHINDELAEIRAFLPAAMD 238

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297
           +L   G L V+SFHSLEDRLVK+FF + + +      +       A +  + +     + 
Sbjct: 239 SLGPDGRLAVISFHSLEDRLVKRFFRADTRQPDPDLPLRNWEIPEAPWFPLGR-ASRAST 297

Query: 298 EDVAFNRRSRSAKLRAGMRTVERSIE 323
           E+VA N R+RSA LR   +  +    
Sbjct: 298 EEVAHNPRARSATLRVAQKRGDPHRA 323


>gi|326402227|ref|YP_004282308.1| ribosomal RNA small subunit methyltransferase H [Acidiphilium
           multivorum AIU301]
 gi|325049088|dbj|BAJ79426.1| ribosomal RNA small subunit methyltransferase H [Acidiphilium
           multivorum AIU301]
          Length = 313

 Score =  322 bits (825), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 140/308 (45%), Positives = 187/308 (60%), Gaps = 9/308 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78
           HVPVL E+ +A+L P    V LD TFG GGYS S  +  S  V A+DRDP A++ G    
Sbjct: 7   HVPVLREEAVAMLAPRADGVYLDGTFGGGGYSASMLEAASCTVWAIDRDPAAIARGAALA 66

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
             Y ++  L +  F  L   + D+GV   DG VFD GVSS Q+D   RGFSF+  GPLDM
Sbjct: 67  ARYPDRLHLIEGRFGDLLALLRDRGVTALDGAVFDFGVSSYQLDDPSRGFSFRTDGPLDM 126

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RM  +G +A+D+VN     +L  IL   GEE+ + RIA AIV+RR + PF+TT DL+++I
Sbjct: 127 RMGAAGPTAADIVNGYAEAELADILFHFGEERASRRIAAAIVRRRAAQPFETTADLAAVI 186

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           +  V   + + I PATRSFQALRI VN E+ E+ + L +A   L  GG L+ VSFHSLED
Sbjct: 187 RTVVRPDR-SGIDPATRSFQALRIEVNQELAEIERALEAAASLLAPGGRLVAVSFHSLED 245

Query: 256 RLVKKFFASRSGKVMAVRHMIPSN----AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           R+VK+F  + +G V A     PS     A    F+++T+ VV P + + A N R+RSA+L
Sbjct: 246 RIVKRFMNAATGHVAAPSRHDPSGLARQAAAPRFRALTRGVVTPGEAETAANPRARSARL 305

Query: 312 RAGMRTVE 319
           R   R   
Sbjct: 306 RGIERLAA 313


>gi|148926658|ref|ZP_01810339.1| hypothetical protein Cj8486_0712c [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|145845177|gb|EDK22272.1| hypothetical protein Cj8486_0712c [Campylobacter jejuni subsp.
           jejuni CG8486]
          Length = 312

 Score =  321 bits (824), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 101/302 (33%), Positives = 160/302 (52%), Gaps = 9/302 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76
            H+PVLL +V  +         LD T G GG+S +  K   ++  IA D+D  A+   ++
Sbjct: 6   PHIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKNHPDLKFIACDQDQQALEFSKK 65

Query: 77  TMRDYKEQFSLFQATFSQ-LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
            ++D++ + +  Q+ FS+ L+     + + G++ D+GVSS Q+D  +RGFS      LDM
Sbjct: 66  RLKDFRNRITFMQSNFSEVLEKISHKEELRGILADIGVSSFQLDNNERGFSVNSD-FLDM 124

Query: 136 RMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM+  S ISA +++N    + LT I    GE   A  IA  I   R   P ++ ++L  +
Sbjct: 125 RMNQNSKISAYEIINTYTKEQLTSIFKDYGELHDAHFIAEKICLERSKNPIKSAKELYQI 184

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           I K      + +I  AT +FQA+RI VN E++ L   L   E       +L ++SFHSLE
Sbjct: 185 IGK--GKQNHRKISKATLAFQAIRIEVNQELKVLKDFLEHLENLKPKNCILAIISFHSLE 242

Query: 255 DRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           DR+VK+FF   S   +    +       + ++ Q ITKK +  ++E++  N RS  AK+R
Sbjct: 243 DRIVKQFFKKWSKNCICNEKIMRCECGNNHSLGQIITKKAISASKEELLKNSRSSCAKMR 302

Query: 313 AG 314
           A 
Sbjct: 303 AF 304


>gi|51246756|ref|YP_066640.1| hypothetical protein DP2904 [Desulfotalea psychrophila LSv54]
 gi|54036176|sp|Q6AJ47|RSMH_DESPS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|50877793|emb|CAG37633.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54]
          Length = 295

 Score =  321 bits (824), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 106/306 (34%), Positives = 166/306 (54%), Gaps = 25/306 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H+ VLLE+ +  L   PG + +D T G GG++ +  +       V+A + D  A+   +E
Sbjct: 7   HISVLLEETMEFLCLQPGGIYVDGTMGLGGHTSAILERTAPDGRVVAFEWDENAIKASRE 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  Y E+ +L +  F+++   + + G+   DG++ D+G+SS+Q+D G RGFSFQ+   L
Sbjct: 67  RLAPYGERLTLVRRNFAEIGVGLTEAGISHIDGLLIDIGLSSLQLDTGTRGFSFQRDDDL 126

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM   G ++A+ ++     + L  +    GEE+QA  IA AIV  R+  P QTT+ L 
Sbjct: 127 DMRMDERGEMTAATIIATCTEEQLADLFYCYGEERQARPIAAAIVAARKLEPIQTTKQLV 186

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            ++ + +       +IH AT+ FQALRI VN E+E L++ +  A + LK G    ++SFH
Sbjct: 187 RVVARAIPKRFHPKKIHVATKVFQALRIAVNTELENLSKIIDDAGEFLKPGSRFCIISFH 246

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+VK+ F                      F+ IT K V   +E++  N RSRSA L
Sbjct: 247 SLEDRIVKRKFREN-----------------PNFKVITNKPVKAGEEELDRNYRSRSALL 289

Query: 312 RAGMRT 317
           R   + 
Sbjct: 290 RVAEKV 295


>gi|262202917|ref|YP_003274125.1| S-adenosyl-methyltransferase MraW [Gordonia bronchialis DSM 43247]
 gi|262086264|gb|ACY22232.1| S-adenosyl-methyltransferase MraW [Gordonia bronchialis DSM 43247]
          Length = 336

 Score =  321 bits (824), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 107/311 (34%), Positives = 174/311 (55%), Gaps = 11/311 (3%)

Query: 20  HVPVLLEKVIALLNPA----PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSC 73
           H+PVL  ++  LL P+      +V++DAT GAGG++           ++ +DRD  A++ 
Sbjct: 16  HLPVLAARMAELLAPSLESGDERVLVDATLGAGGHAELMLNRFPNLRLVGIDRDAHALAI 75

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQKS 130
            ++ +    ++ SL QA F QL   + D  +DG+   +FDLGVSSMQ+D   RGF++   
Sbjct: 76  AEKRLAPMADRISLHQARFDQLPQVLADAAIDGIDGALFDLGVSSMQLDQPGRGFAYAID 135

Query: 131 GPLDMRM-SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM    G++A+DV+N  +  +L R+L   GEE+ A RIA A++  R+  PF T+ 
Sbjct: 136 APLDMRMNDEDGLTAADVLNTYSHGELARVLSEYGEERFAGRIASAVIAEREKEPFTTSA 195

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L +L+ + +  + +    HPA R+FQALRI VN+E++ +   + +A  A + GG + V+
Sbjct: 196 RLVALLYQAIPAATRRTGGHPAKRTFQALRIEVNHELDAIRAAVPAALDATRVGGRVAVM 255

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           S+ SLEDR++K+ FA+R+         +        F+ IT+    P   ++  N RS  
Sbjct: 256 SYQSLEDRIIKREFATRTTSTSPRGLPVELPGTAPRFRLITRGAERPDAAELERNPRSAP 315

Query: 309 AKLRAGMRTVE 319
            ++R   R   
Sbjct: 316 VRVRVIERVAA 326


>gi|308807246|ref|XP_003080934.1| MRAW_PARUW S-adenosyl-methyltransferase mraW ref|YP_007310.1|
           probable S-ade (ISS) [Ostreococcus tauri]
 gi|116059395|emb|CAL55102.1| MRAW_PARUW S-adenosyl-methyltransferase mraW ref|YP_007310.1|
           probable S-ade (ISS) [Ostreococcus tauri]
          Length = 370

 Score =  321 bits (824), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 111/325 (34%), Positives = 173/325 (53%), Gaps = 27/325 (8%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSC 73
              H  V+++++++       +  +D T GAGG++++  +      + I  D D  A + 
Sbjct: 47  TAPHYSVMMDEILSAFRDVELRAHVDGTLGAGGHAQAMIRTHPEMEHFIGFDVDASAHAI 106

Query: 74  GQETMRDYKE----------QFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSSMQ 117
            +  +   +E          + SL +A F Q+   +   G      +DGVV DLGVSSM 
Sbjct: 107 ARPRLERAREDARGGEAGALKVSLVEANFRQMAQALEAMGGIHRAGIDGVVLDLGVSSMH 166

Query: 118 IDCGDRGFSFQKSGPLDMRMSCSGIS-ASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
           +D  +RGFSF   GPLDMRM  S  + A ++VN    +++ RIL   GEE+    +A  I
Sbjct: 167 LDRAERGFSFMNDGPLDMRMGPSAKTSAEEIVNAWPEEEIGRILRDYGEERHWRLLAKRI 226

Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236
            +RR +    TT++L   +       K   IHPATR+FQ +RI VN+E+  +   + +A 
Sbjct: 227 CERRAAKAITTTRELVDALGNV--PGKWGSIHPATRTFQGIRIAVNDELGAVEDVIPAAI 284

Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAV-----RHMIPSNAHPAVFQSITKK 291
           +AL+ GG L ++SFHSLED +VKK F   +G+   +     R+M      P V + IT+K
Sbjct: 285 EALRPGGRLAIISFHSLEDSIVKKKFRFYAGQAEPLGETFNRYMDQPEKPPKVVKLITRK 344

Query: 292 VVVPTQEDVAFNRRSRSAKLRAGMR 316
            +VP+ ++V  N RSRSAKLR   +
Sbjct: 345 PLVPSVDEVDENVRSRSAKLRVCEK 369


>gi|239917869|ref|YP_002957427.1| S-adenosyl-methyltransferase MraW [Micrococcus luteus NCTC 2665]
 gi|281413637|ref|ZP_06245379.1| S-adenosyl-methyltransferase MraW [Micrococcus luteus NCTC 2665]
 gi|263456502|sp|C5CA38|RSMH_MICLC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|239839076|gb|ACS30873.1| S-adenosyl-methyltransferase MraW [Micrococcus luteus NCTC 2665]
          Length = 331

 Score =  321 bits (824), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 108/325 (33%), Positives = 174/325 (53%), Gaps = 15/325 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKMGSN 60
           M +        H+PV+ ++V+ LL PA           V +D T G GG++ +      +
Sbjct: 1   MDAGQPRPEDRHLPVMRDRVVDLLAPAVQAALEAGRTPVAVDGTLGMGGHTEALLTRFPH 60

Query: 61  V--IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSS 115
           +  I +DRD  A +   E +    ++   F  T+ ++ + +   GV   D  ++DLGVSS
Sbjct: 61  LRVIGIDRDAHAQAMAAERLGPLADRVIPFHGTYDRVPEAMAAAGVTKVDAALYDLGVSS 120

Query: 116 MQIDCGDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAH 174
            Q+D  +RGF++    PLDMRM   +  SA+ +V + + ++L RI+   GEE+ A  IA 
Sbjct: 121 YQLDDRERGFAYSYDAPLDMRMDDTAERSAATLVAELDEQELRRIIRRDGEERFAGPIAR 180

Query: 175 AIVKRRQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLR 233
           AIV+ R  AP +TT  L  +I+  V   +     HPA R+FQALRI VN E++ L   + 
Sbjct: 181 AIVRARAEAPIETTGRLVEVIRSAVPVAAGATGGHPAKRTFQALRIAVNEELDILDAAVP 240

Query: 234 SAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV 293
           +   AL  GG L+V+S+HSLEDR+ K+  ++ +         +    H  V + +T+   
Sbjct: 241 AILDALHVGGRLVVMSYHSLEDRITKRHLSAWATSTAPPGFPVVLEEHEPVVRVLTRGTE 300

Query: 294 VPTQEDVAFNRRSRSAKLRAGMRTV 318
            PT+E+++ NRR+ SAK+RA  +  
Sbjct: 301 KPTEEEISENRRASSAKVRAVEKIR 325


>gi|207092313|ref|ZP_03240100.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 308

 Score =  321 bits (824), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 113/310 (36%), Positives = 176/310 (56%), Gaps = 14/310 (4%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70
           +      H  VLL++V+    P    V++D T G GG+S++      +  +I +D+D FA
Sbjct: 1   MQEIENLHQSVLLQEVLQAFAPLEKGVLIDCTLGLGGHSKAILSQKPHLKLIGIDKDKFA 60

Query: 71  VSCGQETMRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSF 127
               +E +++++ +++L    F++  ++ +      + GV+ DLGVSS+Q+D  +RGF+F
Sbjct: 61  QEIAKERLKEFEGRYNLLSGGFAKRFKEALETHNKEIKGVLVDLGVSSLQLDDDNRGFNF 120

Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
             S  LDMRM   S ++A  V+N   V  L +I    GE K+  +IAH I +RR   PF+
Sbjct: 121 -HSHALDMRMDLESELNAQKVINSYPVIALEKIFKDYGEIKEYKKIAHKIAERRAKKPFK 179

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
             +DLS  +     FSKN +IHPAT  FQA+RI VN+E+EEL + L+ A      G +L 
Sbjct: 180 DAKDLSEFLSS---FSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCARNL--KGAILC 234

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           V+SFHSLED LVK  F   +   +          + + A+ + +TKK + P+ E++  NR
Sbjct: 235 VISFHSLEDVLVKNAFKDYAKNCICDPLSFKCACSNNHALGEILTKKPITPSPEEIKNNR 294

Query: 305 RSRSAKLRAG 314
           RSRSAK+R  
Sbjct: 295 RSRSAKMRVF 304


>gi|319778491|ref|YP_004129404.1| rRNA small subunit methyltransferase H [Taylorella equigenitalis
           MCE9]
 gi|317108515|gb|ADU91261.1| rRNA small subunit methyltransferase H [Taylorella equigenitalis
           MCE9]
          Length = 288

 Score =  321 bits (824), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 115/288 (39%), Positives = 171/288 (59%), Gaps = 13/288 (4%)

Query: 40  ILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ 96
            +D TFG GG+SR    +    S ++  D+DP A+    E+++    +  +    FS + 
Sbjct: 2   YVDGTFGRGGHSRYLLSLLDKNSKLVVFDKDPMAIEAA-ESLKKEDGRVLVVHGAFSTMS 60

Query: 97  DYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQAN 152
           D + D G   VDG+  DLG+SS QID G RGFSF + GPLDMRM  S G++A++ +  A+
Sbjct: 61  DVLSDFGITKVDGITMDLGISSPQIDDGTRGFSFMRDGPLDMRMDNSKGLTAAEWLASAD 120

Query: 153 VKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATR 212
           V+ + +++   GEE+ A +IA AI  RR+  P +TT +L+ LI   V  ++    HPATR
Sbjct: 121 VELIAKVIKEYGEERFAFQIAKAIASRREHNPIRTTHELAELIAANV-RTREKGQHPATR 179

Query: 213 SFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVM-- 270
           +FQA+RI++N E+EEL++ L SA + LK GG L V+SFHSLEDR+VK+F A  S      
Sbjct: 180 TFQAIRIYINEELEELSRSLTSAIELLKVGGRLSVISFHSLEDRIVKQFIAKESNPASEF 239

Query: 271 AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318
           A   +   +      +S+ K  +  T++++  N RSRSA LR   R  
Sbjct: 240 ARLPIREVDMPKGNLKSLGK--LTATEDEILKNPRSRSAILRVAERIE 285


>gi|317177525|dbj|BAJ55314.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori F16]
          Length = 308

 Score =  321 bits (824), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 112/304 (36%), Positives = 172/304 (56%), Gaps = 14/304 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           H  VLL++V+    P    V++D T G GG+S++      ++  I +D+D FA    +E 
Sbjct: 8   HQSVLLQEVLQAFVPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFAQEIAKER 67

Query: 78  MRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++ ++ +++L    F++  ++ +      + GV+ DLGVSS+Q+D  +RGF+F  S  LD
Sbjct: 68  LKAFEGRYNLLSGGFAKRFKEALETHNKEIKGVLVDLGVSSLQLDDDNRGFNF-HSHALD 126

Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM   G ++A  V+N   V  L +I    GE K+  +IAH I +RR   PF+  +DLS 
Sbjct: 127 MRMDLEGDLNAQKVINSYPVVALEKIFKDYGEIKEYKKIAHKITERRAKKPFKDAKDLSD 186

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
            +      SKN +IHPAT  FQA+RI VN E+EEL + L+ A      G +L V+SFHSL
Sbjct: 187 FLSS---LSKNKKIHPATLVFQAVRIEVNRELEELKEFLQCARNL--KGAILCVISFHSL 241

Query: 254 EDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           ED LVK  F   +   +          + + A+ + +TKK + P+ E++  NRRSRSAK+
Sbjct: 242 EDALVKNAFKDYAKNCICNPLSFKCTCSNNHALGEILTKKPITPSPEEIKNNRRSRSAKM 301

Query: 312 RAGM 315
           R   
Sbjct: 302 RVFQ 305


>gi|317178936|dbj|BAJ56724.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori F30]
          Length = 308

 Score =  321 bits (824), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 112/311 (36%), Positives = 173/311 (55%), Gaps = 14/311 (4%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70
           +      H  VLL++V+    P    V++D T G GG+S++      +  +I +D+D FA
Sbjct: 1   MQEIENLHQSVLLQEVLQAFAPLEEGVLIDCTLGLGGHSKAILSQKPHLKLIGIDKDKFA 60

Query: 71  VSCGQETMRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSF 127
               +E ++ ++ +++L    F++  ++ +      + GV+ DLGVSS+Q+D  +RGF+F
Sbjct: 61  QEIAKERLKAFEGRYNLLSGGFAKRFKEALETHDKEIKGVLVDLGVSSLQLDDDNRGFNF 120

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
             S  LDMRM    G++A  V+N   V  L +I    GE K+  +IAH I +RR   PF+
Sbjct: 121 -HSHALDMRMDLEGGLNAQKVINSYPVVALEKIFKDYGEIKEYKKIAHKIAERRAKKPFK 179

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
             +DLS  +      SKN +IHPAT  FQA+RI VN E+EEL + L+ A      G +L 
Sbjct: 180 DAKDLSDFLSS---LSKNKKIHPATLVFQAVRIEVNRELEELKEFLQCARNL--KGAILC 234

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           V+SFHSLED LVK  F   +   +          + + A+ + +TKK + P+ E++  NR
Sbjct: 235 VISFHSLEDSLVKNAFKDYAKNCICDPLSFKCACSNNHALGEILTKKPITPSPEEIKNNR 294

Query: 305 RSRSAKLRAGM 315
           RSRSAK+R   
Sbjct: 295 RSRSAKMRVFQ 305


>gi|86149768|ref|ZP_01067997.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|88596954|ref|ZP_01100190.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|85839586|gb|EAQ56846.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|88190643|gb|EAQ94616.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|284925949|gb|ADC28301.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp.
           jejuni IA3902]
 gi|315929134|gb|EFV08361.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp.
           jejuni 305]
          Length = 310

 Score =  321 bits (824), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 101/302 (33%), Positives = 160/302 (52%), Gaps = 9/302 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76
            H+PVLL +V  +         LD T G GG+S +  K   ++  IA D+D  A+   ++
Sbjct: 4   PHIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKNHPDLKFIACDQDQQALKFSKK 63

Query: 77  TMRDYKEQFSLFQATFSQ-LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
            ++D++ + +  Q+ FS+ L+     + + G++ D+GVSS Q+D  +RGFS      LDM
Sbjct: 64  RLKDFRNRITFMQSNFSEVLEKISHKEELRGILADIGVSSFQLDNNERGFSVNSD-FLDM 122

Query: 136 RMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM+  S ISA +++N    + LT I    GE   A  IA  I   R   P ++ ++L  +
Sbjct: 123 RMNQNSKISAYEIINTYTKEQLTSIFKDYGELHDAHFIAEKICLERSKNPIKSAKELYQI 182

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           I K      + +I  AT +FQA+RI VN E++ L   L   E       +L ++SFHSLE
Sbjct: 183 IGK--GKQNHRKISKATLAFQAIRIEVNQELKVLKDFLEHLENLKPKNCILAIISFHSLE 240

Query: 255 DRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           DR+VK+FF   S   +    +       + ++ Q ITKK +  ++E++  N RS  AK+R
Sbjct: 241 DRIVKQFFKKWSKNCICNEKIMRCECGNNHSLGQIITKKAISASKEELLKNSRSSCAKMR 300

Query: 313 AG 314
           A 
Sbjct: 301 AF 302


>gi|169629085|ref|YP_001702734.1| S-adenosyl-methyltransferase MraW [Mycobacterium abscessus ATCC
           19977]
 gi|263456523|sp|B1MP29|RSMH_MYCA9 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|169241052|emb|CAM62080.1| S-adenosyl-methyltransferase MraW [Mycobacterium abscessus]
          Length = 331

 Score =  321 bits (824), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 117/327 (35%), Positives = 179/327 (54%), Gaps = 18/327 (5%)

Query: 12  AIHHTIGDHVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKMGS--NV 61
           + + +   H+PV+L++   LL PA         G V++DAT GAGG++  F  M     V
Sbjct: 2   SDNDSRYGHIPVMLDRCYELLAPALTADSTDGSGAVLVDATLGAGGHTEHFLTMLPGLTV 61

Query: 62  IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSS 115
           I LDRD  A+   +  +  +  +F      +  L D +   G      VDGV+FDLGVSS
Sbjct: 62  IGLDRDTNALDIARSRLAPFGTRFVGVHTRYDGLADALDGLGYRTTSSVDGVLFDLGVSS 121

Query: 116 MQIDCGDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAH 174
           MQ+D  +RGF++    PLDMRM+    ++A+D++N  +  +L+R+L   GEE+ A RIA 
Sbjct: 122 MQLDQAERGFAYSVDAPLDMRMNAQDELTAADILNTYSAVELSRVLSRFGEERFARRIAD 181

Query: 175 AIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLR 233
            IV+RR + PF  +  L  L+  T+  + +    HPA R+FQALRI VN E+E LA  + 
Sbjct: 182 EIVRRRANEPFTRSGQLVELLYATIPAATRRTGGHPAKRTFQALRIAVNAELESLATAIP 241

Query: 234 SAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV 293
           +A  AL+ GG + V+++ SLED++VK  FA+ +     +   +        F +IT+   
Sbjct: 242 AAMAALRPGGRVAVMAYQSLEDKIVKAEFAAATASRSPIDLPVELPGDAPEFTAITRGAE 301

Query: 294 VPTQEDVAFNRRSRSAKLRAGMRTVER 320
               E++  N RS   +LRA  R  +R
Sbjct: 302 RANDEEIEVNPRSAPVRLRAVERVADR 328


>gi|294155677|ref|YP_003560061.1| S-adenosyl-methyltransferase [Mycoplasma crocodyli MP145]
 gi|291600063|gb|ADE19559.1| S-adenosyl-methyltransferase [Mycoplasma crocodyli MP145]
          Length = 300

 Score =  321 bits (823), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 101/305 (33%), Positives = 156/305 (51%), Gaps = 15/305 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H  VLL + I  LN  P  + +D T G GG+S    +   +  +IA D+D +A+   Q+ 
Sbjct: 5   HYSVLLNETIDSLNIKPDGIYIDLTLGMGGHSTKILEKLKSGLLIAFDKDKYALEISQKR 64

Query: 78  MRDYKEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +    ++F L  + +S+L+  +       VDG++ DLG+SS Q+D  +RGFS+ K   LD
Sbjct: 65  LSQISDKFILVNSDYSKLKSELFKLNINKVDGIIADLGISSPQVDDANRGFSYNKDARLD 124

Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM  +  I A  +VN  + + L  I     + K A ++A  I K R   P   T +L  
Sbjct: 125 MRMDTNQEIDAHYIVNNYSCEQLVDIFLKYADVKLAKQVAKVIEKNR---PINNTLELVE 181

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           +I+     +     +PA   FQALRI VNNE++ L   L  A + LK    L +++FHS+
Sbjct: 182 IIKSAYPAAILRAKNPAKAVFQALRIEVNNELDSLKTMLDDAIELLKENSSLSIITFHSI 241

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           EDRLVK  F       M  +  I         +  + K + P+ +++  N+RSRSAKLR 
Sbjct: 242 EDRLVKHKFTELCSSKMPAKMPI------NEIKYFSTKQIKPSAKELLENKRSRSAKLRI 295

Query: 314 GMRTV 318
             + +
Sbjct: 296 LTKLI 300


>gi|227504684|ref|ZP_03934733.1| S-adenosyl-methyltransferase MraW [Corynebacterium striatum ATCC
           6940]
 gi|227198694|gb|EEI78742.1| S-adenosyl-methyltransferase MraW [Corynebacterium striatum ATCC
           6940]
          Length = 355

 Score =  321 bits (823), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 115/354 (32%), Positives = 192/354 (54%), Gaps = 28/354 (7%)

Query: 2   ESKSCKTMSSAIHHTIGD---HVPVLLEKVIALLNPA-----PGKVILDATFGAGGYSRS 53
           + K+   +++ I++ I +   HVPV+ E++  LL PA        V++D T GAGG++  
Sbjct: 4   QDKNTDNVANNINYDIAENHGHVPVMRERMAQLLAPAIEAAGSNAVVVDGTLGAGGHADF 63

Query: 54  FCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQ-----------LQDYVP 100
           F +     +V+ +DRD  +++   E +  ++++F    A F +           + D   
Sbjct: 64  FLRTFPNLHVVGVDRDGASLAAATERLEPFEDRFVGVNARFDEVGGEIARGEGAIFDIAR 123

Query: 101 DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRI 159
           + G+ G +FDLGVSSMQ+D  +RGF+++   PLDMRM  S GI+A+DV+N  +  DL RI
Sbjct: 124 EHGIAGALFDLGVSSMQLDQVERGFAYKTDAPLDMRMDPSHGITAADVLNTYSHGDLARI 183

Query: 160 LGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALR 218
           L   G+E+ A +IA A++K R+  PF  ++ L  L+  T+  + +    HPA R+FQALR
Sbjct: 184 LKTYGDERFAGKIASAVLKEREKEPFSNSERLVELLYATIPAATRRTGGHPAKRTFQALR 243

Query: 219 IFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPS 278
           + VN E+E + Q +     AL  GG  + +S+ SLEDR VK+ FA  +         +  
Sbjct: 244 VEVNRELEAIEQVIPVITDALHVGGRAVFMSYQSLEDRTVKQAFAELAASKTPAGLPMDL 303

Query: 279 NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDDSFVHLPR 332
                 F+++T+     + E++  N R+ S ++RA  R     +E +  +H P 
Sbjct: 304 PGTAPKFKTVTRGAEKASAEEIEENSRAASVRVRAIER-----LEGEPHLHPPG 352


>gi|28373611|pdb|1M6Y|A Chain A, Crystal Structure Analysis Of Tm0872, A Putative Sam-
           Dependent Methyltransferase, Complexed With Sah
 gi|28373612|pdb|1M6Y|B Chain B, Crystal Structure Analysis Of Tm0872, A Putative Sam-
           Dependent Methyltransferase, Complexed With Sah
 gi|28373847|pdb|1N2X|A Chain A, Crystal Structure Analysis Of Tm0872, A Putative Sam-
           Dependent Methyltransferase, Complexed With Sam
 gi|28373848|pdb|1N2X|B Chain B, Crystal Structure Analysis Of Tm0872, A Putative Sam-
           Dependent Methyltransferase, Complexed With Sam
          Length = 301

 Score =  321 bits (823), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 111/309 (35%), Positives = 177/309 (57%), Gaps = 29/309 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77
           H+PV + +VI  L P   K+ILD T G GG+SR+  +   G  +I +D D   +   +E 
Sbjct: 10  HIPVXVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEK 69

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++++ ++ SLF+ ++ +    +   G   VDG++ DLGVS+ Q+   +RGF+F++  PLD
Sbjct: 70  LKEFSDRVSLFKVSYREADFLLKTLGIEKVDGILXDLGVSTYQLKGENRGFTFEREEPLD 129

Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEK-QASRIAHAIVKRRQSAPFQTTQDLS 192
            R    S ++A  V+N+   ++L RI+   GEEK  A RIA  IV+ R   P  TT DL 
Sbjct: 130 XRXDLESEVTAQKVLNELPEEELARIIFEYGEEKRFARRIARKIVENR---PLNTTLDLV 186

Query: 193 SLIQKTVYFS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             +++ +     +  + H AT++FQA+RI+VN E+E L + L+ AE  L  GG ++V+SF
Sbjct: 187 KAVREALPSYEIRRRKRHFATKTFQAIRIYVNRELENLKEFLKKAEDLLNPGGRIVVISF 246

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDR+VK+ F +                     + +T+K V P++E++  N R+RS +
Sbjct: 247 HSLEDRIVKETFRNSKK-----------------LRILTEKPVRPSEEEIRENPRARSGR 289

Query: 311 LRAGMRTVE 319
           LRA  R  E
Sbjct: 290 LRAAERIEE 298


>gi|168702508|ref|ZP_02734785.1| methyltransferase [Gemmata obscuriglobus UQM 2246]
          Length = 293

 Score =  321 bits (823), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 117/305 (38%), Positives = 166/305 (54%), Gaps = 28/305 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HV VL  + +ALL+P P +  +D T G  G++R   +       V+ALD+DP  ++  + 
Sbjct: 9   HVSVLPAETLALLDPRPDETWVDCTTGGAGHTRLIAERVGPAGRVLALDQDPTMLALARP 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +        L  A F QL + +  +G   VDGV+ DLG SS Q+    RG SF+  GPL
Sbjct: 69  LVAGLP--VELVHANFDQLAEVLAARGIAAVDGVLADLGFSSDQLAERARGLSFRDDGPL 126

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMR+   SG +A+D+VN  +   L  +    GEE+ + R+A  IV RR   PF TT DL+
Sbjct: 127 DMRLDPTSGSTAADMVNSLSEGALADVFWEYGEERHSRRVAKKIVARRAERPFATTADLA 186

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           S+++  V   ++  I PATR FQALRI VN+E+  L + L      +K+GG + ++SFHS
Sbjct: 187 SVVRSCVP--RSGSIDPATRVFQALRIAVNDELGSLDRLLAVLPTVVKSGGRVGIISFHS 244

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR VK    +                   V++ +TKK V    E+VA N R+RSAKLR
Sbjct: 245 LEDRRVKHVLRT-----------------EGVWRPLTKKPVEAGDEEVARNPRARSAKLR 287

Query: 313 AGMRT 317
           A  R 
Sbjct: 288 AATRI 292


>gi|293192321|ref|ZP_06609432.1| S-adenosyl-methyltransferase MraW [Actinomyces odontolyticus F0309]
 gi|292820236|gb|EFF79230.1| S-adenosyl-methyltransferase MraW [Actinomyces odontolyticus F0309]
          Length = 335

 Score =  321 bits (823), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 113/325 (34%), Positives = 170/325 (52%), Gaps = 12/325 (3%)

Query: 7   KTMSSAIHHTIGDHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKM--GSNV 61
           + +  +       HVPVLL + + +L P    PG V++D T G GG++    +   G  V
Sbjct: 6   EPVRDSSRPASERHVPVLLRECLDMLAPAIKRPGAVLVDGTLGMGGHTEGALERFEGLTV 65

Query: 62  IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSM 116
           I +DRDP A+      +  +  +F     T+  +   V ++      VDGV+ DLGVSS+
Sbjct: 66  IGIDRDPQAIELASARLERFGTRFRAVHTTYDNIDVAVEEQLGTGARVDGVLMDLGVSSL 125

Query: 117 QIDCGDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175
           Q+D  DRGF++ K  PLDMRM   SG SA+D++  ++  +L RIL   GEEK A RIA  
Sbjct: 126 QLDEADRGFAYSKDAPLDMRMDATSGQSAADLLATSSEGELIRILRTYGEEKFAPRIARL 185

Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234
           I++RR  AP   T +L  +I++ +   ++    +PA R+FQALR+ VN+E+  L + L  
Sbjct: 186 IIRRRDDAPITRTGELVDIIREAIPAPARRTGGNPAKRTFQALRVAVNDELTILERALPR 245

Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVV 294
           A  +L+ GG L+V S+ SLEDR+VK      S         +  +      + +TK    
Sbjct: 246 ALSSLRVGGRLVVESYQSLEDRIVKDVLRCGSTSAAPPGLPVVPDEMAPSLRLLTKGANK 305

Query: 295 PTQEDVAFNRRSRSAKLRAGMRTVE 319
             Q +   N RS S +LR      E
Sbjct: 306 ADQAEQDHNPRSASVRLRGAELIRE 330


>gi|15645330|ref|NP_207501.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori 26695]
 gi|8134812|sp|O25411|RSMH_HELPY RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|2313835|gb|AAD07761.1| conserved hypothetical protein [Helicobacter pylori 26695]
          Length = 308

 Score =  321 bits (823), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 112/304 (36%), Positives = 174/304 (57%), Gaps = 14/304 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           H  VLL++V+    P    V++D T G GG+S++      ++  I +D+D FA    +E 
Sbjct: 8   HQSVLLQEVLQAFMPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFAQEIAKER 67

Query: 78  MRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++ ++ +++L    F++  ++ +      + GV+ DLGVSS+Q+D  +RGF+F  S  LD
Sbjct: 68  LKAFEGRYNLLSGGFAKRFKEALETHNKEIKGVLVDLGVSSLQLDDDNRGFNF-HSHTLD 126

Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM   S ++A  V+N   +  L +I    GE K+  +IAH I +RR   PF+  +DLS 
Sbjct: 127 MRMDLESELNAQKVINSYPIVALEKIFRDYGEIKEYKKIAHKIAERRAKKPFKNAKDLSE 186

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
            +     FSKN +IHPAT  FQA+RI VN+E+EEL + L+ A      G +L V+SFHSL
Sbjct: 187 FLSS---FSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCARNL--KGAILCVISFHSL 241

Query: 254 EDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           ED LVK  F   +   +          + + A+ + +TKK + P+ E++  NRRSRSAK+
Sbjct: 242 EDALVKNAFKDYAKNCICDPSSFKCACSNNHALGEILTKKPITPSPEEIKNNRRSRSAKM 301

Query: 312 RAGM 315
           R   
Sbjct: 302 RVFQ 305


>gi|284030811|ref|YP_003380742.1| S-adenosyl-methyltransferase MraW [Kribbella flavida DSM 17836]
 gi|283810104|gb|ADB31943.1| S-adenosyl-methyltransferase MraW [Kribbella flavida DSM 17836]
          Length = 324

 Score =  321 bits (823), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 117/295 (39%), Positives = 179/295 (60%), Gaps = 10/295 (3%)

Query: 20  HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCG 74
           HVPV+L++V+ALL P    PG V++DAT G GG+S +F +    + +I LDRDP A+   
Sbjct: 10  HVPVMLDRVVALLAPALQQPGSVLVDATLGLGGHSEAFLQRCPEARLIGLDRDPAALRLA 69

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            E +  Y  + +L  A + +L   + + GV   DG++FDLGVSSMQ+D  DRGF++ +  
Sbjct: 70  GERLAPYAGRTTLVHAVYDELPRVLDELGVPAIDGILFDLGVSSMQLDEADRGFAYAQDA 129

Query: 132 PLDMRMSCSGIS-ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  +  + A+DV+N  +  DL RIL   GEEK A +IA  IV+ R++ PF  +  
Sbjct: 130 PLDMRMDPTAPTTAADVLNTYSAADLARILFQYGEEKFARKIADRIVRARETEPFSHSAR 189

Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           LS L++  +   ++    HPA R+FQALRI VN+E++ L + L +A  AL   G ++V+S
Sbjct: 190 LSELVRDAIPQAARRTGGHPAKRTFQALRIEVNSELDVLRRALPAALGALALHGRIVVMS 249

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           +HSLEDR+ K+  A+ +   +     +    H    + +T+    PT+++VA N 
Sbjct: 250 YHSLEDRITKQTLAAATRSDVPDDLPVIPAGHEPYLKLLTRGAERPTEDEVAENP 304


>gi|121611471|ref|YP_999278.1| S-adenosyl-methyltransferase MraW [Verminephrobacter eiseniae
           EF01-2]
 gi|263504490|sp|A1WRK3|RSMH_VEREI RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|121556111|gb|ABM60260.1| S-adenosyl-methyltransferase MraW [Verminephrobacter eiseniae
           EF01-2]
          Length = 334

 Score =  321 bits (823), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 131/324 (40%), Positives = 177/324 (54%), Gaps = 22/324 (6%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALL----NPAPGKVILDATFGAGGYSRSFCKMGS---NV 61
           MSSA       H  VL E  +  L     PAP    +DATFG GG++R           +
Sbjct: 1   MSSAPC-----HTTVLREPAVDALLARAGPAPAGTWVDATFGRGGHTRLILCRLGPQGRL 55

Query: 62  IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCG 121
           +A D+DP A++      R    +FS+    F QL   +P   + GV+ DLGVSS QID  
Sbjct: 56  VAFDKDPEAIAEAM---RITDARFSIRHQGFGQLGQ-LPAGSLAGVLMDLGVSSPQIDSP 111

Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF+  GPLDMRM  + G+SA+D +  A+   + ++L   GEE+ A  IA AIV RR
Sbjct: 112 ERGFSFRFDGPLDMRMDTTRGLSAADWLATADAGQIAQVLRDYGEERFAGLIAKAIVARR 171

Query: 181 Q-SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
           Q   P   T +L+ L+   V   +  + +PATR+FQALRIF+N E+EEL Q L ++   L
Sbjct: 172 QARGPLARTAELADLVAGAVKTREPGQ-NPATRTFQALRIFINAELEELQQALAASLLVL 230

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
           + GG L+V+SFHSLEDR+VK+F A  S +    R      A P   Q +    V P   +
Sbjct: 231 QPGGRLVVLSFHSLEDRIVKQFIARHSRQPFDRRVPF---AAPQAMQLLALARVRPDAAE 287

Query: 300 VAFNRRSRSAKLRAGMRTVERSIE 323
           VA N R+RSA +R   RT     E
Sbjct: 288 VAANPRARSAIMRVAERTQAHGAE 311


>gi|213965216|ref|ZP_03393413.1| S-adenosyl-methyltransferase MraW [Corynebacterium amycolatum SK46]
 gi|213952068|gb|EEB63453.1| S-adenosyl-methyltransferase MraW [Corynebacterium amycolatum SK46]
          Length = 346

 Score =  320 bits (822), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 111/329 (33%), Positives = 165/329 (50%), Gaps = 29/329 (8%)

Query: 20  HVPVLLEKVIALLNPA-----PGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVS 72
           HVPVLL +V  LL P         V++D T GAGG++    +    +  + LDRD  A+ 
Sbjct: 17  HVPVLLHRVTDLLRPGIEALGDDAVVVDGTLGAGGHTEYLLEQFPKLCVVGLDRDDNALR 76

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYV--------------------PDKGVDGVVFDLG 112
             +E +  +  +F  F+  F  L + +                      KG+ G +FDLG
Sbjct: 77  GAEERLARFGNRFVAFRVRFDSLAEVLSGEIPAAAGGSGAENILARAAGKGIAGALFDLG 136

Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASR 171
           VSSMQ+D  +RGF+++   PLDMRM  S GI+A+DV+N  +  D+ RIL   G+E+ A +
Sbjct: 137 VSSMQLDQVNRGFAYRVDAPLDMRMDASQGITAADVLNTYSHGDIARILSTYGDERFAGK 196

Query: 172 IAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQ 230
           IA AI++ R+  PF  +  L  L+ +T+  + +    HPA R+FQALRI VN E+E L  
Sbjct: 197 IASAILREREKEPFTNSGRLVELLYETIPAASRRKGGHPAKRTFQALRIEVNRELEALEN 256

Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK 290
            L     AL   G  + +S+ SLEDR+VKK F  R          +    H   F  IT+
Sbjct: 257 VLPQVCDALAVDGRAVFMSYQSLEDRIVKKDFVERVKSTTPPGLPMELPGHEPHFALITR 316

Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319
                +  ++  N R+   ++R   R   
Sbjct: 317 GAEKASASEIEDNPRAAPVRVRCIERIRA 345


>gi|297379907|gb|ADI34794.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori v225d]
          Length = 308

 Score =  320 bits (822), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 112/304 (36%), Positives = 172/304 (56%), Gaps = 14/304 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H  VLL++V+    P    V++D T G GG+S++      +  +I +D+D FA    +E 
Sbjct: 8   HQSVLLQEVLQAFAPLEEGVLIDCTLGLGGHSKAILSQKPHLKLIGIDKDKFAQEIAKER 67

Query: 78  MRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++ ++ +++L    F++  ++ +      + GV+ DLGVSS+Q+D  +RGF+F  S  LD
Sbjct: 68  LKAFEGRYNLLSGGFAKRFKEALETHDKEIKGVLVDLGVSSLQLDDDNRGFNF-HSHALD 126

Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM   G ++A  V+N   V  L +I    GE K+  +IAH I +RR   PF+  +DLS 
Sbjct: 127 MRMDLEGDLNAQKVINSYPVVALEKIFKDYGEIKEYKKIAHKIAERRAKKPFKDAKDLSD 186

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
            +      SKN +IHPAT  FQA+RI VN E+EEL + L+ A      G +L V+SFHSL
Sbjct: 187 FLSS---LSKNKKIHPATLVFQAVRIEVNRELEELKEFLQCARNL--KGAILCVISFHSL 241

Query: 254 EDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           ED LVK  F   +   +          + + A+ + +TKK + P+ E++  NRRSRSAK+
Sbjct: 242 EDALVKNAFKDYAKNCVCDPSSFKCACSNNHALGEILTKKPITPSPEEIKNNRRSRSAKM 301

Query: 312 RAGM 315
           R   
Sbjct: 302 RVFQ 305


>gi|317012519|gb|ADU83127.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori Lithuania75]
          Length = 308

 Score =  320 bits (822), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 113/304 (37%), Positives = 175/304 (57%), Gaps = 14/304 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           H  VLL++V+    P    V++D T G GG+S++      ++  I +D+D FA    +E 
Sbjct: 8   HQSVLLQEVLQAFTPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFAQKIAKER 67

Query: 78  MRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++ ++ +++L    F++  ++ +      + GV+ DLGVSS+Q+D  +RGF+F  S  LD
Sbjct: 68  LKAFEGRYNLLSGGFAKRFKEALETHNKEIKGVLVDLGVSSLQLDDDNRGFNF-HSHTLD 126

Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM   S ++A  V+N  +V  L +I    GE K+  +IAH I +RR   PF+  +DLS 
Sbjct: 127 MRMDLESDLNAQKVINSYSVVALEKIFRDYGEIKEYKKIAHKIAERRAKKPFKDAKDLSD 186

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
            +     FSKN +IHPAT  FQA+RI VN+E+EEL + L+ A      G +L V+SFHSL
Sbjct: 187 FLSS---FSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCARNL--KGAILCVISFHSL 241

Query: 254 EDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           ED LVK  F   +   +          + + A+ + +TKK + P+ E++  NRRSRSAK+
Sbjct: 242 EDALVKNAFKDYAKNCICDPSSFKCACSNNHALGEILTKKPITPSPEEIKNNRRSRSAKM 301

Query: 312 RAGM 315
           R   
Sbjct: 302 RVFQ 305


>gi|313681992|ref|YP_004059730.1| s-adenosyl-methyltransferase mraw [Sulfuricurvum kujiense DSM
           16994]
 gi|313154852|gb|ADR33530.1| S-adenosyl-methyltransferase MraW [Sulfuricurvum kujiense DSM
           16994]
          Length = 307

 Score =  320 bits (822), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 101/305 (33%), Positives = 166/305 (54%), Gaps = 14/305 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQE 76
            H+PVL  +VI   +P    +++D T G GG+S    +     ++I +D+DP A++   +
Sbjct: 5   PHIPVLYREVIEAFSPCKEGIVIDCTMGYGGHSSLLLENNPALSLIGIDQDPTAIAFSSK 64

Query: 77  TMRDYKEQFSLFQATFSQLQ-DYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  +  +  + +  FS++  D + +KG  + G++ D+GVSS+Q+D  +RGFS++    L
Sbjct: 65  RLEPFGNRVEIRRGRFSEVARDAIEEKGEKICGILADIGVSSLQLDQRERGFSYESD-TL 123

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+    +SA +VVN  +   L  IL   GE   A ++A  IV+RR   PF + ++LS
Sbjct: 124 DMRMNPDAPLSAGEVVNDYSQGALETILREYGEVTNARKVAETIVQRR---PFSSAKELS 180

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           + I   +   K  +IHP+T   QA+RI VN+E+ EL + L + E +      + +++FHS
Sbjct: 181 NAIFHLMP--KGKKIHPSTLVMQAIRIEVNDELGELTRLLDAIEASKLKHLRVAIITFHS 238

Query: 253 LEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           LEDR+VK  F       +              A+ + ITKK +    +++  N RSRSAK
Sbjct: 239 LEDRIVKNRFTKWGKNCICPDDAMRCTCGNKNAIGKIITKKPLSAQDDELRANSRSRSAK 298

Query: 311 LRAGM 315
           LR   
Sbjct: 299 LRIFE 303


>gi|154509049|ref|ZP_02044691.1| hypothetical protein ACTODO_01566 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798683|gb|EDN81103.1| hypothetical protein ACTODO_01566 [Actinomyces odontolyticus ATCC
           17982]
          Length = 335

 Score =  320 bits (822), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 113/325 (34%), Positives = 170/325 (52%), Gaps = 12/325 (3%)

Query: 7   KTMSSAIHHTIGDHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKM--GSNV 61
           + +  +       HVPVLL + + +L P    PG V++D T G GG++    +   G  V
Sbjct: 6   EPVRDSSRPASERHVPVLLRECLDMLAPAIKRPGAVLVDGTLGMGGHTEGALERFEGLTV 65

Query: 62  IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSM 116
           I +DRDP A+      +  +  +F     T+  +   V ++      VDGV+ DLGVSS+
Sbjct: 66  IGIDRDPQAIELASARLERFGTRFRAVHTTYDNIDVAVEEQLGTGARVDGVLMDLGVSSL 125

Query: 117 QIDCGDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175
           Q+D  DRGF++ K  PLDMRM   SG SA+D++  ++  +L RIL   GEEK A RIA  
Sbjct: 126 QLDEADRGFAYSKDAPLDMRMDATSGQSAADLLATSSEGELIRILRTYGEEKFAPRIARL 185

Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234
           I++RR  AP   T +L  +I++ +   ++    +PA R+FQALR+ VN+E+  L + L  
Sbjct: 186 IIRRRDDAPITRTGELVGIIREAIPAPARRTGGNPAKRTFQALRVAVNDELTILERALPR 245

Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVV 294
           A  +L+ GG L+V S+ SLEDR+VK      S         +  +      + +TK    
Sbjct: 246 ALSSLRVGGRLVVESYQSLEDRIVKDVLRRGSTSAAPPGLPVIPDEMAPSLRLLTKGANK 305

Query: 295 PTQEDVAFNRRSRSAKLRAGMRTVE 319
             Q +   N RS S +LR      E
Sbjct: 306 ADQAEQDHNPRSASVRLRGAELIRE 330


>gi|217034743|ref|ZP_03440143.1| hypothetical protein HP9810_898g11 [Helicobacter pylori 98-10]
 gi|216942736|gb|EEC22294.1| hypothetical protein HP9810_898g11 [Helicobacter pylori 98-10]
          Length = 324

 Score =  320 bits (822), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 112/304 (36%), Positives = 173/304 (56%), Gaps = 14/304 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           H  VLL++V+    P    V++D T G GG+S++      ++  I +D+D FA    +E 
Sbjct: 24  HQSVLLQEVLQAFAPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFAQEIAKER 83

Query: 78  MRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++ ++ +++L    F++  ++ +      + GV+ DLGVSS+Q+D  +RGF+F  S  LD
Sbjct: 84  LKAFEGRYNLLSGGFAKRFKEALETHDKEIKGVLVDLGVSSLQLDDDNRGFNF-HSHALD 142

Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM+  G ++A  V+N   V  L +I    GE K+  +IAH I +RR   PF+  +DLS 
Sbjct: 143 MRMNLEGDLNAQKVINSYPVVALEKIFRDYGEIKEYKKIAHKIAERRAKKPFKDAKDLSD 202

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
            +      SKN +IHPAT  FQA+RI VN E+EEL + L+ A      G +L V+SFHSL
Sbjct: 203 FLSS---LSKNKKIHPATLVFQAVRIEVNRELEELKEFLQCARNL--KGAILCVISFHSL 257

Query: 254 EDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           ED LVK  F   +   +          + + A+ + +TKK + P+ E++  NRRSRSAK+
Sbjct: 258 EDSLVKNAFKDYAKNCICDPLSFKCTCSNNHALGEILTKKPITPSPEEIKNNRRSRSAKM 317

Query: 312 RAGM 315
           R   
Sbjct: 318 RVFQ 321


>gi|157414980|ref|YP_001482236.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|263445755|sp|A8FLC2|RSMH_CAMJ8 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|157385944|gb|ABV52259.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|307747617|gb|ADN90887.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Campylobacter jejuni subsp. jejuni M1]
 gi|315931891|gb|EFV10846.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 310

 Score =  320 bits (822), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 100/302 (33%), Positives = 159/302 (52%), Gaps = 9/302 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76
            H+PVLL +V  +         LD T G GG+S +  K   ++  IA D+D  A+   ++
Sbjct: 4   PHIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKNHPDLKFIACDQDQQALEFSKK 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVP-DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
            ++D+  + +  Q+ FS++ + +   + + G++ D+GVSS Q+D  +RGFS      LDM
Sbjct: 64  RLKDFHNRITFIQSNFSEVLEKISYKEELRGILADIGVSSFQLDNNERGFSVNSD-FLDM 122

Query: 136 RMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM+  S ISA +++N    + LT I    GE   A  IA  I   R   P ++ ++L  +
Sbjct: 123 RMNQNSKISAYEIINTYTKEQLTSIFKDYGELHDAHFIAEKICLERSKNPIKSAKELYQI 182

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           I K      + +I  AT +FQA+RI VN E++ L   L   E       +L ++SFHSLE
Sbjct: 183 IGK--GKQNHRKISKATLAFQAIRIEVNQELKVLKDFLGHLENLKPKNCILAIISFHSLE 240

Query: 255 DRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           DR+VK FF   S   +    +       + ++ Q ITKK +  ++E++  N RS  AK+R
Sbjct: 241 DRIVKNFFKKWSKNCICDEKIMRCECGNNHSLGQIITKKAISASKEELLKNSRSSCAKMR 300

Query: 313 AG 314
           A 
Sbjct: 301 AF 302


>gi|86151694|ref|ZP_01069908.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|315124195|ref|YP_004066199.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|85841323|gb|EAQ58571.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|315017917|gb|ADT66010.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
          Length = 310

 Score =  320 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 101/302 (33%), Positives = 158/302 (52%), Gaps = 9/302 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76
            H+PVLL +V  +         LD T G GG+S +  K   ++  IA D+D  A+   ++
Sbjct: 4   PHIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKNHPDLKFIACDQDQQALEFSKK 63

Query: 77  TMRDYKEQFSLFQATFSQ-LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
            ++D+  + +  Q+ FS+ L+     + + G++ D+GVSS Q+D  +RGFS      LDM
Sbjct: 64  RLKDFHNRITFVQSNFSEVLEKISHKEELRGILADIGVSSFQLDNNERGFSVNSD-FLDM 122

Query: 136 RMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM+  S ISA +++N    + LT I    GE   A  IA  I   R   P ++ ++L  +
Sbjct: 123 RMNQNSKISAYEIINTYTKEQLTSIFKDYGELHDAHFIAEKICLERSKNPIKSAKELYQI 182

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           I K      + +I  AT +FQA+RI VN E++ L   L   E       +L ++SFHSLE
Sbjct: 183 IGK--GKQNHRKISKATLAFQAIRIEVNQELKVLKDFLGHLENLKPKNCILAIISFHSLE 240

Query: 255 DRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           DR+VK FF   S   +    +       + ++ Q ITKK +  ++E++  N RS  AK+R
Sbjct: 241 DRIVKNFFKKWSKNCICDEKIMRCECGNNHSLGQIITKKAISASKEELLKNSRSSCAKMR 300

Query: 313 AG 314
           A 
Sbjct: 301 AF 302


>gi|296134857|ref|YP_003642099.1| S-adenosyl-methyltransferase MraW [Thiomonas intermedia K12]
 gi|295794979|gb|ADG29769.1| S-adenosyl-methyltransferase MraW [Thiomonas intermedia K12]
          Length = 311

 Score =  320 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 118/315 (37%), Positives = 171/315 (54%), Gaps = 14/315 (4%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69
           +      H  VLL + +  L   P  V LDATFG GG+SR   +       +IA+DRDP 
Sbjct: 1   MPSAESAHRTVLLHEAVDQLITNPDGVYLDATFGRGGHSREILRRLSPAGRLIAIDRDPQ 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFS 126
           A+    +    +  +F +  A FS+    + ++GV   DG++FDLGVSS Q+D  +RGFS
Sbjct: 61  AIEAAAQI---HDARFVIKHAPFSEFARVLHEQGVAQADGLLFDLGVSSPQLDQPERGFS 117

Query: 127 FQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR-QSAP 184
           F+  GPLDMRM   SG + ++ +  A+V ++  +L   G+E+ A +IA  IV RR   AP
Sbjct: 118 FRADGPLDMRMDNSSGQTVAEYLATASVDEIATVLRDYGDERAAVQIAKKIVARRDAGAP 177

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
              + +L++L+   V   +  +  PATR+FQALRI VN E+ ++   L      L+ GG 
Sbjct: 178 LARSGELAALVASAVKSREPGQ-DPATRTFQALRIHVNAELAQIETALSQVLDCLRPGGR 236

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV--VPTQEDVAF 302
           L V+SFHSLED L+K+F    +      R         A FQ   K+VV   P+  +++ 
Sbjct: 237 LAVISFHSLEDALIKRFIHRHARAPAVDRRQPFVPGVSAEFQPQLKEVVRMRPSAAEISG 296

Query: 303 NRRSRSAKLRAGMRT 317
           N RSRSA LR   R 
Sbjct: 297 NARSRSAMLRVAQRV 311


>gi|208434621|ref|YP_002266287.1| hypothetical protein HPG27_664 [Helicobacter pylori G27]
 gi|226709921|sp|B5Z772|RSMH_HELPG RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|208432550|gb|ACI27421.1| hypothetical protein HPG27_664 [Helicobacter pylori G27]
          Length = 308

 Score =  320 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 114/311 (36%), Positives = 175/311 (56%), Gaps = 14/311 (4%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70
           +      H  VLL++V+    P    V++D T G GG+S++      +  +I +D+D FA
Sbjct: 1   MQEIENLHQSVLLQEVLQAFTPLEEGVLVDCTLGLGGHSKALLSQKPHLKLIGIDKDKFA 60

Query: 71  VSCGQETMRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSF 127
               +E ++ ++ +++L    F++  ++ +   G  + GV+ DLGVSS+Q+D  +RGF+F
Sbjct: 61  QEIAKERLKAFEGRYNLLSGGFAKRFKEALEIHGDRIKGVLVDLGVSSLQLDDDNRGFNF 120

Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
             S  LDMRM   S ++A  V+N   V  L +I    GE K+  +IAH I +RR   PF+
Sbjct: 121 -HSHALDMRMDLESDLNAQKVINSYPVIALEKIFRDYGEIKEYKKIAHKIAERRAKKPFK 179

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
             +DLS  +     FSKN +IHPAT  FQA+RI VN+E+EEL + L+ A      G +L 
Sbjct: 180 DAKDLSDFLSS---FSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCARNL--NGAILC 234

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           V+SFHSLED LVK  F   +   +          + + A+   +TKK + P+ E++  NR
Sbjct: 235 VISFHSLEDGLVKNAFKDYAKNCICDPLSFQCTCSNNHALGAILTKKPITPSPEEIKNNR 294

Query: 305 RSRSAKLRAGM 315
           RSRSAK+R   
Sbjct: 295 RSRSAKMRVFQ 305


>gi|66809695|ref|XP_638570.1| hypothetical protein DDB_G0284343 [Dictyostelium discoideum AX4]
 gi|60467186|gb|EAL65220.1| hypothetical protein DDB_G0284343 [Dictyostelium discoideum AX4]
          Length = 367

 Score =  320 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 112/320 (35%), Positives = 182/320 (56%), Gaps = 23/320 (7%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAV 71
           + +   H PV +++V+ +LNP P KV +DATFG GG+SR   +      VIA DRDP   
Sbjct: 53  YESYKIHKPVFIKEVLEILNPQPNKVYIDATFGMGGHSRGILETCKDCYVIAFDRDPKVF 112

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD-----GVVFDLGVSSMQIDCGDRGFS 126
              +    ++K++     +TFS ++  + +K +D     G+++D GVSS QID  DRGFS
Sbjct: 113 EMTKPLRSEFKDRLITINSTFSSMRSALKEKNLDHLKISGILYDFGVSSYQIDTADRGFS 172

Query: 127 FQKS--GPLDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           F+K   GPLDMRM+ +   I+A D++N  + KDL  I    GEEK    IA+ I+++R+ 
Sbjct: 173 FKKELEGPLDMRMNQNSSQITAYDIINTFSEKDLRDIFFYYGEEKHTKNIANEILRKRKI 232

Query: 183 APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
            P + T DL  +++ ++ +     +   +R F++LR+FVN+E+ E+  GL   E+ L+  
Sbjct: 233 EPIKNTSDLVKIVESSIPYPMA--LKTISRVFRSLRMFVNDELNEIKIGLTQGEQLLEPN 290

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
             L+ +SFHS+EDR+VK++    +          P+           K  + P++E++ +
Sbjct: 291 SPLLAISFHSIEDRIVKQYLNKYTTIEEPTFKFSPT----------YKSPIFPSKEELEW 340

Query: 303 NRRSRSAKLRAGMRTVERSI 322
           N RS+SA LR  +RT  + I
Sbjct: 341 NPRSKSAILRTAIRTSNKPI 360


>gi|184201136|ref|YP_001855343.1| S-adenosyl-methyltransferase MraW [Kocuria rhizophila DC2201]
 gi|263456204|sp|B2GJQ6|RSMH_KOCRD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|183581366|dbj|BAG29837.1| methyltransferase MraW [Kocuria rhizophila DC2201]
          Length = 327

 Score =  320 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 112/317 (35%), Positives = 179/317 (56%), Gaps = 10/317 (3%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCG 74
           HVPVLL++ + LL PA      V+LDAT G GG++ +  +   ++  + +DRDP A+   
Sbjct: 10  HVPVLLDRCLDLLAPALDTEAPVVLDATLGMGGHTHAMLERFPHLRVVGIDRDPQALELA 69

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
              ++ +  +F+    T+  + D     GV   DGV+FDLGVSS+Q+D  +RGF++    
Sbjct: 70  GRRLQRFGSRFASIHTTYDHIADAAAAAGVERVDGVLFDLGVSSLQLDERERGFAYSFDA 129

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM   + +SA  VVN+ +   L  I+   GE++ A RIA AIV  R  AP +TT  
Sbjct: 130 PLDMRMDSRAELSAYTVVNEYSEARLRDIIFRWGEDRFAPRIARAIVAARADAPLRTTAQ 189

Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L   ++  V  + ++ + HPA ++FQALRI VN E++ L + + +A + ++ GG +I +S
Sbjct: 190 LVDAVRSAVPAAAQHKKGHPAKQTFQALRIEVNEELDVLERAIPAAVETVRVGGRVIAMS 249

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           +HSLEDR+VK+ FA  +         +    H  V + +T+      +++   N R+ SA
Sbjct: 250 YHSLEDRIVKQEFARGARSTAPRGFPVELPEHQPVLKVLTRGAERADEQETLENPRAASA 309

Query: 310 KLRAGMRTVERSIEDDS 326
           +LRA  R  E +    +
Sbjct: 310 RLRAVERLRETTTPGSA 326


>gi|78187960|ref|YP_376003.1| methyltransferase [Chlorobium luteolum DSM 273]
 gi|123582409|sp|Q3B121|RSMH_PELLD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|78167862|gb|ABB24960.1| methyltransferase [Chlorobium luteolum DSM 273]
          Length = 327

 Score =  320 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 104/317 (32%), Positives = 170/317 (53%), Gaps = 21/317 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--------GSNVIALDRDPFAV 71
           H PVLL + +  L   P  + +D T G GG+S +  +         GS ++ +D+D  A+
Sbjct: 9   HDPVLLHECVDALVRGP-GLYVDGTLGGGGHSMAILRALESGGWLEGSLLVGIDQDDEAL 67

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD--------GVVFDLGVSSMQIDCGDR 123
                 +  Y  +    +  F  +      + V          ++ DLGVSS QID  +R
Sbjct: 68  HEAGSRLAAYPGRAVAVKGNFQDIARLASREAVQKGLEPRARAILLDLGVSSRQIDRAER 127

Query: 124 GFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR-Q 181
           GFS+ ++GPLDMRM  S   +A+D++N A+ ++L  I    GEE ++  IA A++  R +
Sbjct: 128 GFSYMRTGPLDMRMDSSASTTAADILNDADERELAAIFFRYGEEPRSRAIARAVIAARMK 187

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
             P  +T+DL+ +++  V+  + + I   +R FQALRI VN E++ L + L      L  
Sbjct: 188 HGPLSSTEDLADIVRSVVHGRQPS-IRSLSRVFQALRIAVNRELDVLQRVLEDGVSVLDE 246

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDV 300
           GG + V+S+HSLEDR+VK++FA++S      + + +           +T+K VV ++++V
Sbjct: 247 GGRIAVISYHSLEDRMVKQYFAAQSKCDWGPKGVGLREPLSRGTLVPVTRKAVVASEDEV 306

Query: 301 AFNRRSRSAKLRAGMRT 317
             N RSRSAKLR   +T
Sbjct: 307 RVNPRSRSAKLRVAEKT 323


>gi|283953941|ref|ZP_06371470.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp.
           jejuni 414]
 gi|283794546|gb|EFC33286.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp.
           jejuni 414]
          Length = 309

 Score =  320 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 97/302 (32%), Positives = 157/302 (51%), Gaps = 9/302 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76
            H+PVLL +V  +         LD T G GG+S +  K   N+  IA D+D  A+   ++
Sbjct: 4   PHIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKNHPNLKFIACDQDQQALEFSKK 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYV-PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
            +  + ++ +  Q+ F ++ + +   + + G++ D+GVSS Q+D  +RGFS      LDM
Sbjct: 64  RLEHFHDRITFIQSNFGEILEKISHKEDLRGILADIGVSSFQLDNNERGFSLNSD-FLDM 122

Query: 136 RMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM+  S ISA ++VN    + LT I    GE   A  IA  I   R   P ++ ++L  +
Sbjct: 123 RMNQNSKISAYEIVNTYTKEQLTSIFKEYGELHDAHFIAEKICLARNKNPIKSAKELCQI 182

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           I K+     + +I  AT  FQA+RI VN E++ L    +  E       +L +++FHSLE
Sbjct: 183 IGKS--KQNHRKISKATLVFQAIRIEVNQELKVLKDFFKYLENLKPKNCILAIINFHSLE 240

Query: 255 DRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           DR+VK FF   +   +    +       + ++ Q ITKK +  ++E++  N RS  AK+R
Sbjct: 241 DRIVKNFFKKWAKNCICDEKIMRCECGNNHSLGQIITKKAISASKEELLKNSRSSCAKMR 300

Query: 313 AG 314
           A 
Sbjct: 301 AF 302


>gi|23335461|ref|ZP_00120697.1| COG0275: Predicted S-adenosylmethionine-dependent methyltransferase
           involved in cell envelope biogenesis [Bifidobacterium
           longum DJO10A]
 gi|23465877|ref|NP_696480.1| S-adenosyl-methyltransferase MraW [Bifidobacterium longum NCC2705]
 gi|189439036|ref|YP_001954117.1| S-adenosyl-methyltransferase MraW [Bifidobacterium longum DJO10A]
 gi|227547548|ref|ZP_03977597.1| S-adenosyl-methyltransferase [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|239621159|ref|ZP_04664190.1| S-adenosyl-methyltransferase [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|312132476|ref|YP_003999815.1| s-adenosylmethionine-dependent membrane protein [Bifidobacterium
           longum subsp. longum BBMN68]
 gi|322689514|ref|YP_004209248.1| S-adenosyl-methyltransferase [Bifidobacterium longum subsp.
           infantis 157F]
 gi|322691469|ref|YP_004221039.1| S-adenosyl-methyltransferase [Bifidobacterium longum subsp. longum
           JCM 1217]
 gi|42558985|sp|Q8G4R0|RSMH_BIFLO RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263445917|sp|B3DQM3|RSMH_BIFLD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|23326579|gb|AAN25116.1| widely conserved hypothetical protein in upf0117 [Bifidobacterium
           longum NCC2705]
 gi|189427471|gb|ACD97619.1| Putative S-adenosylmethionine-dependent membrane protein
           [Bifidobacterium longum DJO10A]
 gi|227211958|gb|EEI79854.1| S-adenosyl-methyltransferase [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|239515620|gb|EEQ55487.1| S-adenosyl-methyltransferase [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|311773403|gb|ADQ02891.1| Putative S-adenosylmethionine-dependent Membrane protein
           [Bifidobacterium longum subsp. longum BBMN68]
 gi|320456325|dbj|BAJ66947.1| S-adenosyl-methyltransferase [Bifidobacterium longum subsp. longum
           JCM 1217]
 gi|320460850|dbj|BAJ71470.1| S-adenosyl-methyltransferase [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 359

 Score =  320 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 113/307 (36%), Positives = 160/307 (52%), Gaps = 11/307 (3%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           H+PVLL+  + L+ PA      + +D T G  G+S +F K      +I +DRD  A+   
Sbjct: 8   HLPVLLDDCVNLMAPALEHENAIAVDCTLGLAGHSIAFLKAAPQARLIGIDRDSEALGLA 67

Query: 75  QETMRDYK--EQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK 129
            E M      ++F    A F QL   + D+    VD V  DLG+SS+QID  DRGFS+  
Sbjct: 68  TERMEREGLADRFIPVHAAFDQLDQVLADQDIERVDAVFMDLGLSSLQIDETDRGFSYSH 127

Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM  S  ++A  ++   +  +L RI    GEE+ + +IA AIV RR   PF TT
Sbjct: 128 DAPLDMRMDVSQPLTAERILATYDAAELVRIFKEYGEERFSRQIARAIVARRDKEPFTTT 187

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ L+ + V  +     +PA R FQALRI VN E+++LA  L  A   L  GG L+V 
Sbjct: 188 AQLNRLVDEVVPQAHRPAGNPAKRVFQALRIEVNGELDKLASTLPQAANRLHVGGRLVVE 247

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           S+HSLED+ VK F A      +     +        F  +T+  +   + ++A N RS S
Sbjct: 248 SYHSLEDKTVKSFMAQGLRVDVPAGLPVIPPDAQPFFTDLTRGAIKADEHEIAANPRSAS 307

Query: 309 AKLRAGM 315
            +LRA  
Sbjct: 308 VRLRAVE 314


>gi|57236996|ref|YP_178797.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni RM1221]
 gi|68565428|sp|Q5HV88|RSMH_CAMJR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|57165800|gb|AAW34579.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni RM1221]
 gi|315058156|gb|ADT72485.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp.
           jejuni S3]
          Length = 310

 Score =  320 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 101/302 (33%), Positives = 160/302 (52%), Gaps = 9/302 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76
            H+PVLL +V  +         LD T G GG+S +  K   ++  IA D+D  A+   ++
Sbjct: 4   PHIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKNHPDLKFIACDQDQQALEFSKK 63

Query: 77  TMRDYKEQFSLFQATFSQ-LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
            ++D++ + +  Q+ FS+ L+     + + G++ D+GVSS Q+D  +RGFS      LDM
Sbjct: 64  RLKDFRNRITFMQSNFSEVLEKISHKEELRGILADIGVSSFQLDNNERGFSVNSD-FLDM 122

Query: 136 RMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM+  S ISA +++N    + LT I    GE   A  IA  I   R   P ++ ++L  +
Sbjct: 123 RMNQNSKISAYEIINTYTKEQLTSIFKDYGELHDAHFIAEKICLERSKNPIKSAKELYQI 182

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           I K      + +I  AT +FQA+RI VN E++ L   L   E       +L ++SFHSLE
Sbjct: 183 IGK--GKQNHRKISKATLAFQAIRIEVNQELKVLKDFLGHLENLKPKNCILAIISFHSLE 240

Query: 255 DRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           DR+VK+FF   S   +    +       + ++ Q ITKK +  ++E++  N RS  AK+R
Sbjct: 241 DRIVKQFFKKWSKNCICNEKIMRCECGNNHSLGQIITKKAISASKEELLKNSRSSCAKMR 300

Query: 313 AG 314
           A 
Sbjct: 301 AF 302


>gi|148651949|ref|YP_001279042.1| S-adenosyl-methyltransferase MraW [Psychrobacter sp. PRwf-1]
 gi|262825202|sp|A5WBQ1|RSMH_PSYWF RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|148571033|gb|ABQ93092.1| S-adenosyl-methyltransferase MraW [Psychrobacter sp. PRwf-1]
          Length = 339

 Score =  320 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 108/334 (32%), Positives = 168/334 (50%), Gaps = 22/334 (6%)

Query: 12  AIHHTIGDHVPVLLEKVIAL------LN---PAPGKVILDATFGAGGYSRSFCKMGSN-- 60
           +   +   H  VLL + +A       LN   P    + +DATFG GG+S+      S+  
Sbjct: 11  STSKSEFSHETVLLFETVAAVLGEKSLNDNTPKHDGIYVDATFGRGGHSKLLLNYLSDDA 70

Query: 61  -VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSM 116
            +   D+DP A+    + +    ++  +   +F+ +   +  +GV   DG++ DLGVSS 
Sbjct: 71  KLFVFDKDPEAIDVAND-LAAEDKRVIVVHDSFADMTQCLNSRGVSQVDGIMADLGVSSP 129

Query: 117 QIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175
           Q+D G RGFSF + G +DMRM  S G    + +   + + L  +L   GEE+ + RIA A
Sbjct: 130 QLDDGSRGFSFMRDGAIDMRMDTSRGQPVGEWLQTVDEETLADVLYDFGEERHSRRIARA 189

Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           I   +    + +T +L+ +I++  +       HPAT+SFQA+RIF+NNE+ ++   L  +
Sbjct: 190 I---KGMTQYTSTLELAEVIKQA-HPKWQKGKHPATQSFQAMRIFINNELGDIDSFLAQS 245

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295
              L   G L V+SFHSLEDR +K+F    S         +P       + S  K+ + P
Sbjct: 246 LTLLAPQGQLAVISFHSLEDRRIKQFLQRHSRGQYPEDENLPMPPQRPRYFSKPKR-IAP 304

Query: 296 TQEDVAFNRRSRSAKLRAGMRTVERSIEDDSFVH 329
           ++ +V  N RSRSA LR   RT      D S  H
Sbjct: 305 SKAEVTVNNRSRSAWLRVATRTDTPYNTDPSPQH 338


>gi|295394731|ref|ZP_06804946.1| S-adenosyl-methyltransferase MraW [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294972327|gb|EFG48187.1| S-adenosyl-methyltransferase MraW [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 362

 Score =  320 bits (820), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 116/317 (36%), Positives = 173/317 (54%), Gaps = 20/317 (6%)

Query: 19  DHVPVLLEKVIALLN----------PAPGKVILDATFGAGGYSRSFCKMGS--NVIALDR 66
            HVPVLL+  + LL            AP  V++D T G GG+S    ++    +VI +DR
Sbjct: 43  PHVPVLLDMCVELLGHGIEEARARGIAP--VVIDFTLGMGGHSEGILRVFDDVHVIGIDR 100

Query: 67  DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDR 123
           DP A+      +  +  +F     +   + + +  +G   + GV+FDLGVSS+Q+D   R
Sbjct: 101 DPAAIEIATSRLAPFGSRFEAVCTSDDNISEVLEQRGNPPISGVLFDLGVSSLQLDDDAR 160

Query: 124 GFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GFS+ +  PLDMRM+ + GISA+DV+   +  DLTRI+   GEE+ A RIA AIV  R+ 
Sbjct: 161 GFSYSRDTPLDMRMNPTEGISAADVLATYSENDLTRIISTYGEERYARRIARAIVADREH 220

Query: 183 APFQTTQDLSSLIQKTVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
            P+ +TQ L+ LI + V   KN R   HPA R+FQALRI VN+E+  + + L +A  AL 
Sbjct: 221 TPWTSTQQLADLIGRIVPDPKNQRKRSHPAKRTFQALRIEVNDELGNITRSLPAALSALH 280

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300
            GG+ +V S+ S ED +VK+ F   +         +  +      + I +      QE++
Sbjct: 281 LGGVAVVESYQSGEDIIVKRIFRQGTTVQAPPDLPVVPDHLKPWLEEIVRGAYKAPQEEI 340

Query: 301 AFNRRSRSAKLRAGMRT 317
             N R+ S +LRA  +T
Sbjct: 341 DHNPRAASVRLRAVRKT 357


>gi|206896128|ref|YP_002247018.1| S-adenosyl-methyltransferase MraW [Coprothermobacter proteolyticus
           DSM 5265]
 gi|263446122|sp|B5Y8C1|RSMH_COPPD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|206738745|gb|ACI17823.1| S-adenosyl-methyltransferase MraW [Coprothermobacter proteolyticus
           DSM 5265]
          Length = 299

 Score =  320 bits (820), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 111/304 (36%), Positives = 163/304 (53%), Gaps = 23/304 (7%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76
           +H PV+ ++V  LL      + +DAT G+GG+             I +D DP AV    E
Sbjct: 6   EHKPVMAKQVAELLVSNEEGIYVDATAGSGGHLGLLANTYPEASFIGIDIDPEAVKFLTE 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                     + +  ++ L D +       VDG++ DLG+S  Q     RGFS +  GPL
Sbjct: 66  KFAGV-SNVRIIRGNYADLPDILHSMEIGQVDGILLDLGISMHQALSAQRGFSIKNPGPL 124

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMR S    ++A ++VN  + + L  I+   GEE++A +IA A+V+ R+  P +TT +L+
Sbjct: 125 DMRFSIDQKVTAYELVNSLSEEQLADIIYRYGEERRARKIAKAVVEARKVKPLETTDELA 184

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            L+ +TV +    RIHPATR FQALRI  N E++ L   L    + LK GG L V+S+HS
Sbjct: 185 DLVARTVGY--RGRIHPATRVFQALRIATNRELDNLQVALPRIFQVLKEGGRLAVISYHS 242

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK+FF +   +   +R              +TKKVV P+ E++  N  SRSAKLR
Sbjct: 243 LEDRIVKQFFKTWEEEGKGLR--------------LTKKVVKPSLEEINENPSSRSAKLR 288

Query: 313 AGMR 316
              +
Sbjct: 289 VFKK 292


>gi|318057546|ref|ZP_07976269.1| 16S rRNA m(4)C1402 methyltranserfase [Streptomyces sp. SA3_actG]
 gi|318081147|ref|ZP_07988479.1| 16S rRNA m(4)C1402 methyltranserfase [Streptomyces sp. SA3_actF]
          Length = 343

 Score =  320 bits (820), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 112/309 (36%), Positives = 173/309 (55%), Gaps = 10/309 (3%)

Query: 2   ESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMG 58
           +  +    + A     G HVPV+L + + LL PA   PG V++D T G GG+S +     
Sbjct: 13  DGTAQDPPAPAAGTAEGRHVPVMLRRCLDLLGPALAEPGAVVVDCTLGLGGHSEALLSTF 72

Query: 59  S--NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGV 113
               ++ALDRD  A+    E +  + E+  L  A + +L D +   G   V G++FDLGV
Sbjct: 73  PAARLVALDRDKEALRLAGERLAPFGERAMLAHAVYDELPDVLDRLGIPRVQGILFDLGV 132

Query: 114 SSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRI 172
           SSMQ+D  DRGF++ +  PLDMRM  + G+SA++V+N     +L RIL   GEEKQA RI
Sbjct: 133 SSMQLDEADRGFAYAQDAPLDMRMDQTAGLSAAEVLNTYPPGELVRILRTYGEEKQARRI 192

Query: 173 AHAIVKRRQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQG 231
             A+V+ R+  PF  +  L  LI++ +   +K    +PA R+FQALRI VN E+  L + 
Sbjct: 193 VSAVVREREKEPFARSARLVELIREALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERA 252

Query: 232 LRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKK 291
           + +A   L  GG + V+++HSLEDRLVK+  ++ +         +    +    + +T+ 
Sbjct: 253 IPAAVNTLAVGGRIAVLAYHSLEDRLVKQVLSTGATSTAPPGLPVVPERYQPRLKLLTRG 312

Query: 292 VVVPTQEDV 300
             +P +E+V
Sbjct: 313 AELPAEEEV 321


>gi|308062033|gb|ADO03921.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori Cuz20]
          Length = 310

 Score =  320 bits (820), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 112/304 (36%), Positives = 173/304 (56%), Gaps = 14/304 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           H  VLL++V+    P    V++D T G GG+S++      ++  I +D+D FA    +E 
Sbjct: 8   HQSVLLQEVLQAFTPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFAQEIAKER 67

Query: 78  MRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++ ++ +++L    F++  ++ +      + GV+ DLGVSS+Q+D  +RGF+F  S  LD
Sbjct: 68  LKAFEGRYNLLSGGFAKRFKEALETHNKEIKGVLVDLGVSSLQLDDDNRGFNF-HSHALD 126

Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM   G ++A  V+N   V  L +I    GE K+  +IAH I +RR   PF+  +DLS 
Sbjct: 127 MRMDLEGDLNAQKVINSYPVVALEKIFKDYGEIKEYKKIAHKIAERRAKKPFKDAKDLSD 186

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
            +      SKN +IHPAT  FQA+RI VN+E+EEL + L+ A      G +L V+SFHSL
Sbjct: 187 FLSS---LSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCARNL--KGAILCVISFHSL 241

Query: 254 EDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           ED LVK  F   +   +          + + A+ + +TKK + P+ E++  NRRSRSAK+
Sbjct: 242 EDALVKNAFKDYAKNCICDPSSFKCACSNNHALGEILTKKPITPSPEEIKNNRRSRSAKM 301

Query: 312 RAGM 315
           R   
Sbjct: 302 RVFQ 305


>gi|308374510|ref|ZP_07667801.1| hypothetical protein TMFG_01127 [Mycobacterium tuberculosis
           SUMu006]
 gi|308341663|gb|EFP30514.1| hypothetical protein TMFG_01127 [Mycobacterium tuberculosis
           SUMu006]
 gi|323719262|gb|EGB28406.1| hypothetical protein TMMG_01445 [Mycobacterium tuberculosis
           CDC1551A]
          Length = 328

 Score =  320 bits (820), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 112/316 (35%), Positives = 171/316 (54%), Gaps = 18/316 (5%)

Query: 24  LLEKVIALLNPA-----PGK---VILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSC 73
           + ++   LL PA     P     V+LDAT GAGG++  F +      +I LDRDP A+  
Sbjct: 1   MAQRCFELLTPALTRYYPDGSQAVLLDATIGAGGHAERFLEGLPGLRLIGLDRDPTALDV 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSSMQIDCGDRGFSF 127
            +  +  + ++ +L    +  L   + + G      VDG++FDLGVSSMQ+D  +RGF++
Sbjct: 61  ARSRLVRFADRLTLVHTRYDCLGAALAESGYAAVGSVDGILFDLGVSSMQLDRAERGFAY 120

Query: 128 QKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
               PLDMRM  +  ++A+D+VN  +   L  IL   GEE+ A RIA  IV+RR   PF 
Sbjct: 121 ATDAPLDMRMDPTTPLTAADIVNTYDEAALADILRRYGEERFARRIAAGIVRRRAKTPFT 180

Query: 187 TTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           +T +L +L+ + +   ++    HPA R+FQALRI VN+E+E L   + +A  AL  GG +
Sbjct: 181 STAELVALLYQAIPAPARRVGGHPAKRTFQALRIAVNDELESLRTAVPAALDALAIGGRI 240

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
            V+++ SLEDR+VK+ FA            +    H   F+S+T      +  ++  N R
Sbjct: 241 AVLAYQSLEDRIVKRVFAEAVASATPAGLPVELPGHEPRFRSLTHGAERASVAEIERNPR 300

Query: 306 SRSAKLRAGMRTVERS 321
           S   +LRA  R   R+
Sbjct: 301 STPVRLRALQRVEHRA 316


>gi|92114320|ref|YP_574248.1| methyltransferase [Chromohalobacter salexigens DSM 3043]
 gi|123265653|sp|Q1QVF9|RSMH_CHRSD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|91797410|gb|ABE59549.1| methyltransferase [Chromohalobacter salexigens DSM 3043]
          Length = 331

 Score =  320 bits (820), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 114/306 (37%), Positives = 170/306 (55%), Gaps = 13/306 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H  VLL+  +  L   P    LD TFG GG+SR+  +       ++A+DRDP A++ G  
Sbjct: 28  HASVLLDGAVEALMTDPDGCYLDGTFGRGGHSRAILQRLSPQGRLLAIDRDPAALAEGAT 87

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                  +F+L    F++L D   D  +     GV+ D+GVSS Q+D   RGFSF + GP
Sbjct: 88  W---DDPRFTLRHGRFAELDDIARDAALHRRLSGVLLDVGVSSPQLDDASRGFSFLRDGP 144

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G SA+D + + + +D++ +    GEE+ A RIA AIV RR   P   T DL
Sbjct: 145 LDMRMDPTQGESAADWLARVSERDMSDVFKRYGEERFARRIAKAIVARRGERPITHTADL 204

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + L++      +  + HPATR FQA+RI VN E+++L   L +A ++L  GG L+V+SFH
Sbjct: 205 AELVKAAHPAWEKGK-HPATRVFQAIRIHVNGELDQLEAALAAALESLAPGGRLVVISFH 263

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDRLVK+F   +      +   +P        +  +  K   P ++++A N R+RSA 
Sbjct: 264 SLEDRLVKRFIRDKVRGDTHLPRDLPIRDTQLNRRLAMVGKARRPDEDEIALNPRARSAV 323

Query: 311 LRAGMR 316
           +R   +
Sbjct: 324 MRVAQK 329


>gi|255322622|ref|ZP_05363766.1| S-adenosyl-methyltransferase MraW [Campylobacter showae RM3277]
 gi|255300183|gb|EET79456.1| S-adenosyl-methyltransferase MraW [Campylobacter showae RM3277]
          Length = 310

 Score =  320 bits (820), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 97/301 (32%), Positives = 160/301 (53%), Gaps = 8/301 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76
            HVPVLL +V+         VI+D T G GG+S +  +   N  +IA D+D  A+    E
Sbjct: 4   PHVPVLLNEVLQAFEDIKSGVIVDCTLGYGGHSSAILEQNQNVNLIACDQDEEAIKFSSE 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
            ++ + ++  +F++ FS++   V    + G++ D+GVSS+Q+D  +RGF  +    LDMR
Sbjct: 64  RLKKFGQRAQIFKSKFSEILGKVEQSQIRGILADIGVSSLQLDKNERGFGLKSEN-LDMR 122

Query: 137 MS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M   +  SA D+VN  + K+L RI    GE    ++ A  I++ RQS   ++ + L+ +I
Sbjct: 123 MDAQAKFSAYDIVNFYSAKELERIFADYGELPSPAKFAAKIIEARQSGEIKSAERLAQII 182

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
              +       +  AT +FQA+RI VNNE+ EL   L+S E +     ++ ++SFHSLED
Sbjct: 183 --GLKGVNGRSVSAATLAFQAIRIEVNNELGELQNLLQSIEDSQIDECIVAIISFHSLED 240

Query: 256 RLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           R+VK  F   +   +              A+ + ++KK + P+  ++  N RS  AK+R 
Sbjct: 241 RIVKNKFRQWAQSCICPPQALRCTCGGDNALGKIVSKKAITPSAAEIKANPRSSCAKMRI 300

Query: 314 G 314
            
Sbjct: 301 F 301


>gi|88856505|ref|ZP_01131162.1| S-adenosyl-methyltransferase [marine actinobacterium PHSC20C1]
 gi|88814159|gb|EAR24024.1| S-adenosyl-methyltransferase [marine actinobacterium PHSC20C1]
          Length = 329

 Score =  320 bits (820), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 101/306 (33%), Positives = 158/306 (51%), Gaps = 9/306 (2%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCG 74
           H PVLLE+ I LL PA   PG V++D T G  G++ +F +    +  + +DRD  A++  
Sbjct: 19  HTPVLLERSIELLAPALEAPGAVLVDGTLGMAGHAEAFLQRFPELTLVGIDRDEDALAIA 78

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +  +  +  +     A + ++   +   G   V G+ FDLGVSS+Q+D  +RGFS+ +  
Sbjct: 79  RRRLEPFASRTHFVHAVYEEIPTALASLGFPNVQGIFFDLGVSSLQLDRVERGFSYSQDA 138

Query: 132 PLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  S   +A  ++   +  +L RI    G+EK A R A  IV+ R+  P  T+  
Sbjct: 139 PLDMRMDASTPVTAEHILATYSELELRRIFYSYGDEKLAPRFASRIVQFREQQPLTTSAQ 198

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L  LI      +     HPA R FQALRI VN E+  L + + +A  +L  GG ++V+++
Sbjct: 199 LVELIIAATPAAAQRAGHPAKRVFQALRIEVNQELSVLERAIPAAINSLALGGRMVVLAY 258

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
            SLEDR+VK+    RS         +    H A  + + +     +  +   N R++  +
Sbjct: 259 QSLEDRIVKRELQRRSRSTAPAGLPVELPEHKAELKLLVRGSEQASDAEQQTNPRAKPVR 318

Query: 311 LRAGMR 316
           LRA  R
Sbjct: 319 LRAIER 324


>gi|317402444|gb|EFV83013.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Achromobacter xylosoxidans C54]
          Length = 365

 Score =  319 bits (819), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 125/350 (35%), Positives = 183/350 (52%), Gaps = 37/350 (10%)

Query: 19  DHVPVLLEKVIALL-----------NPAPG-----------KVILDATFGAGGYSRSFCK 56
           +H PVLLE  +  L              PG            V +D TFG GG+SR    
Sbjct: 4   EHRPVLLEPTVDALLLADFGGKGAARSQPGDEPAAATRAERGVFVDGTFGRGGHSRELLG 63

Query: 57  MGS---NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFD 110
                  ++  D+DP A++           + ++    F+ + + +   G   VDGV+ D
Sbjct: 64  RLGPTARLVVFDKDPEAIAVANAL-AAADSRVTVVHGGFATMAEELRQLGIDKVDGVMLD 122

Query: 111 LGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQA 169
           LGVSS QID  +RGFSF + GPLDMRM  + G + +D + QA+V ++  ++   GEE+ A
Sbjct: 123 LGVSSPQIDDAERGFSFMRDGPLDMRMDTTRGPTVADWLAQASVDEMREVIADYGEERFA 182

Query: 170 SRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELA 229
            ++A AI  RR + P +TT +L+  +   V  ++    HPATR+FQALRI++N E+EELA
Sbjct: 183 FQVAKAIAARRATRPLRTTLELAECVASAV-RTREKGQHPATRTFQALRIYINRELEELA 241

Query: 230 QGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQS 287
           + L SA   L  GG L V+SFHSLEDR+VK+  A+ +    A   +    S     V +S
Sbjct: 242 RTLASALDLLAPGGRLAVISFHSLEDRMVKQCIAAAARPAAAHARLPLRESEMPQPVLRS 301

Query: 288 ITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVER--SIEDDSFVHLPRLPT 335
           + +  V+   E+VA N R+RSA LR   RT     +    +FV +  LP 
Sbjct: 302 LGR--VLAEDEEVAANARARSAVLRVAERTATPLSAEGGMAFVKIGSLPG 349


>gi|15618336|ref|NP_224621.1| S-adenosyl-methyltransferase MraW [Chlamydophila pneumoniae CWL029]
 gi|15835954|ref|NP_300478.1| S-adenosyl-methyltransferase MraW [Chlamydophila pneumoniae J138]
 gi|16752618|ref|NP_444882.1| S-adenosyl-methyltransferase MraW [Chlamydophila pneumoniae AR39]
 gi|33241770|ref|NP_876711.1| S-adenosyl-methyltransferase MraW [Chlamydophila pneumoniae TW-183]
 gi|20139310|sp|Q9Z8C2|RSMH_CHLPN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|4376702|gb|AAD18565.1| SAM-Dependent Methytransferase [Chlamydophila pneumoniae CWL029]
 gi|7189261|gb|AAF38187.1| conserved hypothetical protein [Chlamydophila pneumoniae AR39]
 gi|8978793|dbj|BAA98629.1| SAM-dependent methytransferase [Chlamydophila pneumoniae J138]
 gi|33236279|gb|AAP98368.1| predicted S-adenosylmethionine-dependent methyltransferase
           [Chlamydophila pneumoniae TW-183]
 gi|269303297|gb|ACZ33397.1| S-adenosyl-methyltransferase MraW [Chlamydophila pneumoniae LPCoLN]
          Length = 297

 Score =  319 bits (819), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 111/303 (36%), Positives = 161/303 (53%), Gaps = 20/303 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI---ALDRDPFAVSCGQE 76
           H+PVL+E+ +AL    P +   D T GAGG++ +F +   ++      DRD  A++  ++
Sbjct: 6   HIPVLVEECLALFAQRPPQTFRDVTLGAGGHAYAFLEAYPSLTCYDGSDRDLQALAIAEK 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS-GPLDM 135
            +  ++++ S   A+F  L +    +  DGV+ DLGVSSMQ+D   RGFSFQ     LDM
Sbjct: 66  RLETFQDRVSFSHASFEDLANQPTPRLYDGVLADLGVSSMQLDTLSRGFSFQGEKEELDM 125

Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM  +  +SASDV+N    ++L RI    GEE Q    A A+V  R+     + QD+   
Sbjct: 126 RMDQTQELSASDVLNSLKEEELGRIFREYGEEPQWKSAAKAVVHFRKHKKILSIQDVKEA 185

Query: 195 IQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           +       + + +IHP T  FQALR++VN E  +L   L SA   L   G L+++SF S 
Sbjct: 186 LLGVFPHYRFHRKIHPLTLIFQALRVYVNGEDRQLKSLLTSAISWLAPQGRLVIISFCSS 245

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           EDR VK FF       +               + ITKKV+ PT ++V  N RSRSAKLR 
Sbjct: 246 EDRPVKWFFKEAEASGLG--------------KVITKKVIQPTYQEVRRNPRSRSAKLRC 291

Query: 314 GMR 316
             +
Sbjct: 292 FEK 294


>gi|317182020|dbj|BAJ59804.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori F57]
          Length = 308

 Score =  319 bits (819), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 111/311 (35%), Positives = 173/311 (55%), Gaps = 14/311 (4%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70
           +      H  VLL++V+    P    V++D T G GG+S++      +  +I +D+D FA
Sbjct: 1   MQEIENLHQSVLLQEVLQAFVPLEEGVLIDCTLGLGGHSKAILSQKPHLKLIGIDKDKFA 60

Query: 71  VSCGQETMRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSF 127
               +E ++ ++ +++L    F++  ++ +      + GV+ DLGVSS+Q+D  +RGF+F
Sbjct: 61  QEIAKERLKAFEGRYNLLSGGFAKRFKEALETHDKEIKGVLVDLGVSSLQLDDDNRGFNF 120

Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
             S  LDMRM   S ++A  V+N   +  L +I    GE K+  +IAH I +RR   PF+
Sbjct: 121 -HSHALDMRMDLESDLNAQKVINYYPIVALEKIFRDYGEIKEYKKIAHKIAERRAKKPFK 179

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
             +DLS  +      SKN +IHPAT  FQA+RI VN E+EEL + L+ A      G +L 
Sbjct: 180 DAKDLSDFLSS---LSKNKKIHPATLVFQAVRIEVNRELEELKEFLQCARNL--KGAILC 234

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           V+SFHSLED LVK  F   +   +          + + A+ + +TKK + P+ E++  NR
Sbjct: 235 VISFHSLEDALVKNAFKDYAKNCICDPLSFKCTCSNNYALGEILTKKPITPSPEEIKNNR 294

Query: 305 RSRSAKLRAGM 315
           RSRSAK+R   
Sbjct: 295 RSRSAKMRVFQ 305


>gi|261414983|ref|YP_003248666.1| S-adenosyl-methyltransferase MraW [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261371439|gb|ACX74184.1| S-adenosyl-methyltransferase MraW [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302325451|gb|ADL24652.1| S-adenosyl-methyltransferase MraW [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 337

 Score =  319 bits (819), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 88/310 (28%), Positives = 150/310 (48%), Gaps = 14/310 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQE 76
           H PV+L++ +  LN  P     D T G GG+S +          + A DRD  AV    +
Sbjct: 30  HDPVMLKECLEGLNIKPNGTYSDCTLGGGGHSYAIAQELNSEGTLHAFDRDDEAVQFATK 89

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
            +     +F +    FS+L + +    +DGV++DLG+SS Q+D   RGF+F    PLD+R
Sbjct: 90  RLAGVAPKFIVHPVPFSELGNEIEPNSLDGVLYDLGISSHQVDDSSRGFTFVGDNPLDLR 149

Query: 137 MS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ------ 189
           M     +SA + +   +  D    L    +  +A ++A  I +  +     T        
Sbjct: 150 MDRRENVSAQEWLRSVSEDDFAAALRKNADMDRAFKLATRIKE--KVGEITTEGRDVLPS 207

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           D+ ++++      +        R FQA+R+ VN E++++   LR+A   LK GG L+V+S
Sbjct: 208 DIKAVVEAVFPDKRREANSLLARVFQAIRMEVNGELKQIEDSLRAAVDCLKVGGRLVVMS 267

Query: 250 FHSLEDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +HS+EDR VK+  A      +      +     +    + + +K ++P+ +++  N R+R
Sbjct: 268 YHSVEDRCVKETAAEFEKACICPENLPVCMCGGNHQRLKKVNRKPILPSADEINRNSRAR 327

Query: 308 SAKLRAGMRT 317
           SAKLR   R 
Sbjct: 328 SAKLRIYERV 337


>gi|306818510|ref|ZP_07452233.1| S-adenosyl-methyltransferase MraW [Mobiluncus mulieris ATCC 35239]
 gi|304648683|gb|EFM45985.1| S-adenosyl-methyltransferase MraW [Mobiluncus mulieris ATCC 35239]
          Length = 340

 Score =  319 bits (819), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 114/337 (33%), Positives = 183/337 (54%), Gaps = 12/337 (3%)

Query: 11  SAIHHTIGDHVPVLLEKVIALLNPA----PGKVILDATFGAGGYSRSFCKMGSNV--IAL 64
           S I  T   H PVL+++ + LL PA       V++DAT G GG+S +  +   ++  I +
Sbjct: 2   STITPTAAIHQPVLVQRCVELLAPALIPVERPVLVDATVGLGGHSEALLQRFPHLQIIGI 61

Query: 65  DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCG 121
           DRD  A +   + +  +  +  +  AT+ QL + + ++G   VDG++ DLGVSS+Q+D  
Sbjct: 62  DRDGEARALAGKRLSVFGSRIEIVAATYGQLAEILAERGLETVDGILADLGVSSLQLDET 121

Query: 122 DRGFSFQ-KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            RGF++     PLDMRM  S GI+A+  +   +  ++ R+L   GEEK A +IA  IVK 
Sbjct: 122 ARGFAYAIPEAPLDMRMDQSRGITAAQFIATTSETEIARVLRTYGEEKFARQIARNIVKT 181

Query: 180 RQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R+  P +TT +L  LI+ T+   ++ +  +PA R+FQALR+ VN+E+ +L   L +A  A
Sbjct: 182 REVTPLRTTGELVDLIRATIPAPARRHGGNPAKRTFQALRVAVNDELRDLEVFLTAALDA 241

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L+ GG L+V S+ SLEDRLVK+ F       +     +    +    Q +T+        
Sbjct: 242 LRVGGRLVVESYQSLEDRLVKQAFTPGIHPEVPRGLPVIPTGYEPWLQDLTRGAEKADAL 301

Query: 299 DVAFNRRSRSAKLRAGMRTVERSIEDDSFVHLPRLPT 335
           ++  N RS+S +LRA  +  E +  +    +    P 
Sbjct: 302 ELQRNSRSQSVRLRAVAKLREMAPHEPKRTNPNPAPR 338


>gi|269792475|ref|YP_003317379.1| S-adenosyl-methyltransferase MraW [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100110|gb|ACZ19097.1| S-adenosyl-methyltransferase MraW [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 313

 Score =  319 bits (819), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 106/308 (34%), Positives = 171/308 (55%), Gaps = 26/308 (8%)

Query: 20  HVPVLLEKVIALLNPAPG-KVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76
           H+PV+L+K++ LL P     +++D T GAGG+SR+  +   G+++I +D+D   +   +E
Sbjct: 4   HIPVMLDKILELLRPWEEVGLVVDGTLGAGGHSRAILERCQGASLIGIDQDQSILDIARE 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  + ++       F  +   + D G   V   VFDLG+SS Q+D  +RGFSF   GPL
Sbjct: 64  VLSPFGDRVRTVLGNFRDVGRILADLGSPRVSAFVFDLGISSWQVDTPERGFSFNYKGPL 123

Query: 134 DMRMSCSGI---SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ-SAPFQTTQ 189
           DMRM    +   +A+D+VN  ++ +L  +    GE+  A ++A AI + R+   P +T +
Sbjct: 124 DMRMDMGRLGSRTAADIVNGWSMAELAALFRRYGEDPFAYQVARAICRHREKEGPIETCE 183

Query: 190 DLSSLIQKTVYFS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            L S+I+  +     +  R HPA R FQALRI VN+E+  L + L         G  +I 
Sbjct: 184 ALVSVIRSAIPAPAQRKMRGHPARRIFQALRIEVNDELGALEELLDQLPSMGSEGCKVIF 243

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +++HSLEDRLVK      +G+ + V               +T+K +VP++E+V  NRR+R
Sbjct: 244 ITYHSLEDRLVKGRMREWAGQDLGVP--------------LTRKPLVPSEEEVELNRRAR 289

Query: 308 SAKLRAGM 315
           SAK+R  +
Sbjct: 290 SAKVRCFV 297


>gi|237747024|ref|ZP_04577504.1| S-adenosyl-methyltransferase MraW [Oxalobacter formigenes HOxBLS]
 gi|229378375|gb|EEO28466.1| S-adenosyl-methyltransferase MraW [Oxalobacter formigenes HOxBLS]
          Length = 321

 Score =  319 bits (819), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 112/311 (36%), Positives = 171/311 (54%), Gaps = 18/311 (5%)

Query: 20  HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSC 73
           H  VLL + +  L+        V LD TFG GG+SR   +       ++A D+DP AV  
Sbjct: 8   HDSVLLNEAVDALDISGKRADGVYLDGTFGRGGHSRLILERLGEKGRLVAFDKDPEAVRV 67

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +E       +F +   TF+ L++ + ++ +   DG++ DLGVSS Q++   RGFSF+  
Sbjct: 68  AKEI---GDPRFEIVHGTFAALEEVLEERKIKAIDGILLDLGVSSPQVEDAKRGFSFRLD 124

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
           GPLDMRM  + G+SA + +     K +  ++   GEE+ A +IA  IV  R   P  +T+
Sbjct: 125 GPLDMRMDSTRGMSAREWLAVETEKKIAEVIYQYGEERFAFQIAKEIVAGRAIQPIDSTK 184

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            L+ ++ + V   +  + +PATR+FQA+RI+VN E+EEL  GL  A + L   G + V+S
Sbjct: 185 QLAQIVARAVKTFEKGK-NPATRTFQAIRIYVNRELEELEIGLEKAWQRLGLEGRMSVIS 243

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           FHSLEDR+VK+FFA ++   M  R +    S       + + K  + P+  +V  N R+R
Sbjct: 244 FHSLEDRIVKRFFAGKATVKMPDRRLPIRASELPRPEMKLLGK--IKPSAAEVKRNVRAR 301

Query: 308 SAKLRAGMRTV 318
           SA LR   R  
Sbjct: 302 SAILRVATRVA 312


>gi|108563117|ref|YP_627433.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori HPAG1]
 gi|122980507|sp|Q1CTG3|RSMH_HELPH RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|107836890|gb|ABF84759.1| hypothetical protein HPAG1_0692 [Helicobacter pylori HPAG1]
          Length = 308

 Score =  319 bits (818), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 112/304 (36%), Positives = 172/304 (56%), Gaps = 14/304 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           H  VLL++V+    P    V++D T G GG+S++      ++  I +D+D FA    +E 
Sbjct: 8   HQSVLLQEVLQAFTPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFAQEIAKER 67

Query: 78  MRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++ ++ +++L    F++  ++ +      + GV+ DLGVSS+Q+D  +RGF+F  S  LD
Sbjct: 68  LKAFEGRYNLLSGGFAKRFKEALETHNKEIKGVLVDLGVSSLQLDDDNRGFNF-HSHTLD 126

Query: 135 MRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM   S ++A  V+N   V  L +I    GE K+  +IAH I +RR   PF+  +DLS 
Sbjct: 127 MRMDLKSDLNAQKVINSYPVVALEKIFRDYGEIKEYKKIAHKIAERRAKKPFKDAKDLSD 186

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
            +      SKN +IHPAT  FQA+RI VN+E+EEL + L+ A      G +L V+SFHSL
Sbjct: 187 FLSS---LSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCARNL--KGAILCVISFHSL 241

Query: 254 EDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           ED LVK  F   +   +          + + A+   +TKK + P+ E++  NRRSRSAK+
Sbjct: 242 EDALVKNAFKDYAKNCICDPSSFQCTCSNNHALGAILTKKPITPSPEEIKNNRRSRSAKM 301

Query: 312 RAGM 315
           R   
Sbjct: 302 RVFQ 305


>gi|242018707|ref|XP_002429815.1| S-adenosyl-methyltransferase mraW, putative [Pediculus humanus
           corporis]
 gi|212514833|gb|EEB17077.1| S-adenosyl-methyltransferase mraW, putative [Pediculus humanus
           corporis]
          Length = 382

 Score =  319 bits (818), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 118/330 (35%), Positives = 169/330 (51%), Gaps = 29/330 (8%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76
            H PV+L +VI  L+   G + LD TFG+GG+S        ++  +ALDRDP A      
Sbjct: 49  PHEPVMLNEVIKNLDLKKGNLFLDMTFGSGGHSLELLNRVPDLKILALDRDPIAYEYALN 108

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
               + +        FS L   + D  +     DG++ DLG SSMQ D  +RGFS    G
Sbjct: 109 AKEKHPDNIYPLLGKFSDLPKLLNDNNIKANTIDGILLDLGCSSMQFDTPERGFSINNDG 168

Query: 132 PLDMRMSCS----GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQ 186
           PLDMRM C      ++A DV+  A   +L  I    GEEK++ +IA AI + R +  P +
Sbjct: 169 PLDMRMDCDRIKGSLTAGDVIAHATEMELYNIFKKYGEEKRSRKIARAITQMRNTFKPIK 228

Query: 187 TTQDLSSLIQKTV----YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           TT+DL+ LI   +    Y   N +    T+ FQALRIFVNNE+ EL   +  A   LK G
Sbjct: 229 TTKDLNDLISVVLTDVRYDKLNRKTGTGTKIFQALRIFVNNELNELNYAMTLAHHYLKVG 288

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSG-------------KVMAVRHMIPSNAHPAVFQSIT 289
              +V++FHSLED +VK+ F ++                +        ++ +   +  + 
Sbjct: 289 SRAVVLTFHSLEDVIVKRHFKNQHQLNYVQNLPLNMINSLKTYDECEFNSFNKQYWIPVN 348

Query: 290 KKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319
           KKV++P   +V  N RSRSAKLRA ++T E
Sbjct: 349 KKVLIPDSFEVCNNPRSRSAKLRAAIKTQE 378


>gi|254779311|ref|YP_003057416.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori B38]
 gi|263456117|sp|C7BZ94|RSMH_HELPB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|254001222|emb|CAX29192.1| Putative S-adenosyl-methyltransferase MraW [Helicobacter pylori
           B38]
          Length = 308

 Score =  319 bits (818), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 114/310 (36%), Positives = 175/310 (56%), Gaps = 14/310 (4%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFA 70
           +      H  VLL++V+    P    V++D T G GG+S++      ++  I +D+D FA
Sbjct: 1   MQEIENLHQSVLLQEVLQAFTPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFA 60

Query: 71  VSCGQETMRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSF 127
               +E ++ ++ +++L    F++  ++ +      + GV+ DLGVSS+Q+D  DRGF+F
Sbjct: 61  QEIAKERLKAFEGRYNLLSGGFAKRFKEALETHNKEIKGVLVDLGVSSLQLDDDDRGFNF 120

Query: 128 QKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
             S  LDMRM   S ++A  V+N   V  L +I    GE K+  +IAH I +RR   PF+
Sbjct: 121 -HSHALDMRMDLKSDLNAQKVINSYPVIALEKIFRDYGEIKEYKKIAHKIAERRTKKPFK 179

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
             +DLS  +     FSKN +IHPAT  FQA+RI VN+E+EEL + L+ A      G +L 
Sbjct: 180 DAKDLSEFLSS---FSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCARNL--KGAILC 234

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           V+SFHSLED LVK  F   +   +          + + A+ + +TKK + P+ E++  NR
Sbjct: 235 VISFHSLEDGLVKNAFKDYAKNCICDPLSFKCACSNNHALGEILTKKPITPSPEEIKNNR 294

Query: 305 RSRSAKLRAG 314
           RSRSAK+R  
Sbjct: 295 RSRSAKMRVF 304


>gi|91200077|emb|CAJ73120.1| similar to S-adenosyl-dependent methyltransferase [Candidatus
           Kuenenia stuttgartiensis]
          Length = 299

 Score =  319 bits (818), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 114/305 (37%), Positives = 167/305 (54%), Gaps = 22/305 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQE 76
           H PV++++V+  L   PG +ILD T G GG++       K    +I +D+D   ++  +E
Sbjct: 10  HEPVMVDEVLEYLCLQPGSIILDCTVGGGGHAGKIMDRIKPDGCLIGIDKDFDMLNMTKE 69

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGV---VFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + D    F L+ A +    + +   G+DGV   + DLG SS+Q D  +RGFSF K GPL
Sbjct: 70  CLSDRGCPFKLYHADYVDADEVLRQAGIDGVHGVLLDLGASSLQFDSAERGFSFSKEGPL 129

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM   +   A D++ + + +DL  +L   GEE+ + RIA  I+K R  +  ++T  L+
Sbjct: 130 DMRMDRTASFMAQDLLRKISERDLQALLKKYGEERWSKRIARRIIKERSVSGLKSTTQLA 189

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I++ V   + +RIHPATR FQALRI VN E+E L + L     ++  G  + V+SFHS
Sbjct: 190 RIIERAVPSMR-HRIHPATRVFQALRIAVNKELESLEKFLNKIHFSMVKGARIAVISFHS 248

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK  F     K               +F  ITKK + P   ++  N RSRSAKLR
Sbjct: 249 LEDRIVKNSFIEMEDK--------------NIFHIITKKPLRPGASEIERNARSRSAKLR 294

Query: 313 AGMRT 317
              R 
Sbjct: 295 VAERI 299


>gi|187607601|ref|NP_001120214.1| methyltransferase like 15 [Xenopus (Silurana) tropicalis]
 gi|166796910|gb|AAI59379.1| LOC100145263 protein [Xenopus (Silurana) tropicalis]
          Length = 375

 Score =  319 bits (818), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 138/331 (41%), Positives = 183/331 (55%), Gaps = 35/331 (10%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           HVPV++ +V   L P  G+ ILD TFGAGG++ S  K  SN  V+ALDRDP A +  Q+ 
Sbjct: 45  HVPVMVNEVTECLAPQEGQTILDLTFGAGGHTTSILKRASNIKVLALDRDPAAFAIAQQL 104

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                         FS+ +D +   GV     DGV+ D G SSMQ D  DRGFS  + GP
Sbjct: 105 AHSCGHNIQPLLGRFSESKDLLTSAGVEPGSIDGVLLDAGCSSMQFDTPDRGFSLSRDGP 164

Query: 133 LDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           LDMRM         +A+DVVN  + + L  IL   GEE+ A +IA AIV+ R   P   T
Sbjct: 165 LDMRMDGDRYPDMPTAADVVNALDQQALASILKTYGEERHAKKIASAIVQARSIYPITRT 224

Query: 189 QDLSSLIQKTVYFSK----NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           Q L+S++      ++        H AT++FQALRIFVNNE+ EL  GL +AE  L+ GG 
Sbjct: 225 QQLASIVTGASIQARTDLLQRPAHVATKTFQALRIFVNNELNELHAGLSTAETFLRPGGR 284

Query: 245 LIVVSFHSLEDRLVKKFFA-------------------SRSGKVMAVRHMIPSNAHPAVF 285
           L+V+SFHSLEDR+VK+F                      R+ K M     + S+++PA +
Sbjct: 285 LVVISFHSLEDRIVKRFLHGIDMADKPNLAARHKIRQGQRNSKEMEDEEFLMSHSNPA-W 343

Query: 286 QSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
             I KKV+ P  +DV  N R RSAKLRA ++
Sbjct: 344 TVIQKKVLTPQYQDVLENPRGRSAKLRAAIK 374


>gi|317483063|ref|ZP_07942064.1| MraW methylase [Bifidobacterium sp. 12_1_47BFAA]
 gi|291516661|emb|CBK70277.1| S-adenosyl-methyltransferase MraW [Bifidobacterium longum subsp.
           longum F8]
 gi|316915469|gb|EFV36890.1| MraW methylase [Bifidobacterium sp. 12_1_47BFAA]
          Length = 359

 Score =  319 bits (818), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 114/307 (37%), Positives = 160/307 (52%), Gaps = 11/307 (3%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           H+PVLL+  + L+ PA      + +D T G  G+S +F K      +I +DRD  A+   
Sbjct: 8   HLPVLLDDCVNLMAPALEHENAIAVDCTLGLAGHSIAFLKAAPQARLIGIDRDSEALGLA 67

Query: 75  QETMRDYK--EQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK 129
            E M      ++F    A F QL   + D+    VD V  DLG+SS+QID  DRGFS+  
Sbjct: 68  TERMEREGLADRFIPVHAAFDQLDQVLADQDIERVDAVFMDLGLSSLQIDETDRGFSYSH 127

Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM  S  ++A  ++   +  +L RI    GEE+ + +IA AIV RR   PF TT
Sbjct: 128 DAPLDMRMDVSQPLTAERILATYDAAELVRIFKEYGEERFSRQIARAIVARRDKEPFTTT 187

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ L+ + V  +     +PA R FQALRI VN E+++LA  L  A   L  GG L+V 
Sbjct: 188 AQLNRLVDEVVPQAHRPAGNPAKRVFQALRIEVNGELDKLASTLPQAANRLHVGGRLVVE 247

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           S+HSLED+ VK F A      +     +        F  +T+  V   + ++A N RS S
Sbjct: 248 SYHSLEDKTVKSFMAQGLRVDVPAGLPVIPPDAQPFFTDLTRGAVKADEHEIAANPRSAS 307

Query: 309 AKLRAGM 315
            +LRA  
Sbjct: 308 VRLRAVE 314


>gi|148259076|ref|YP_001233203.1| S-adenosyl-methyltransferase MraW [Acidiphilium cryptum JF-5]
 gi|263433381|sp|A5FUK2|RSMH_ACICJ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|146400757|gb|ABQ29284.1| S-adenosyl-methyltransferase MraW [Acidiphilium cryptum JF-5]
          Length = 313

 Score =  319 bits (818), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 139/308 (45%), Positives = 186/308 (60%), Gaps = 9/308 (2%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78
           HVPVL E+ +A+L P    V LD TFG GGYS S  +  S  V A+DRDP A++ G    
Sbjct: 7   HVPVLREEAVAMLAPRADGVYLDGTFGGGGYSASMLEAASCTVWAIDRDPAAIARGAALA 66

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
             Y ++  L +  F  L   + D+GV   DG VFD GVSS Q+D   RGFSF+  GPLDM
Sbjct: 67  ARYPDRLHLIEGRFGDLLALLRDRGVTALDGAVFDFGVSSYQLDDPSRGFSFRTDGPLDM 126

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RM  +G +A+D+VN     +L  IL   GEE+ + RIA AIV+RR + PF+TT DL+++I
Sbjct: 127 RMGAAGPTAADIVNGYAEAELADILFHFGEERASRRIAAAIVRRRAAQPFETTADLAAVI 186

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           +  V   + + I PATRSFQALRI VN E+ E+ + L +A   L  GG L+ VSFHSLED
Sbjct: 187 RTVVRPDR-SGIDPATRSFQALRIEVNQELAEIERALEAAASLLAPGGRLVAVSFHSLED 245

Query: 256 RLVKKFFASRSGKVMAVRHMIPSN----AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           R+VK+F  + +G V A     PS     A    F+++T+ VV P + +   N R+RSA+L
Sbjct: 246 RIVKRFMNAATGHVAAPSRHDPSGLARQAAAPRFRALTRGVVTPGEAETVANPRARSARL 305

Query: 312 RAGMRTVE 319
           R   R   
Sbjct: 306 RGIERLAA 313


>gi|296129435|ref|YP_003636685.1| S-adenosyl-methyltransferase MraW [Cellulomonas flavigena DSM
           20109]
 gi|296021250|gb|ADG74486.1| S-adenosyl-methyltransferase MraW [Cellulomonas flavigena DSM
           20109]
          Length = 333

 Score =  319 bits (818), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 112/318 (35%), Positives = 177/318 (55%), Gaps = 10/318 (3%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGK---VILDATFGAGGYSRSFCKMGSNV--IA 63
           M          HVPVLLE+ + LL PA      V++D T G GG++    +   +V  + 
Sbjct: 1   MDEQTADAASRHVPVLLERCVELLAPALAAPGAVLVDCTLGMGGHTEGVLRAIEHVRVVG 60

Query: 64  LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDC 120
           +DRDP A++   E +  + E+F+   A + ++ D V      GV GV+ DLGVSS+Q+D 
Sbjct: 61  IDRDPQALALASERLAPFGERFTGVHAVYDEIGDVVERLGLPGVQGVLMDLGVSSLQLDE 120

Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGF++    PLDMRM  + G +A+DV+N  + +D+ R+L + GEE+ A+RIA  +V+ 
Sbjct: 121 AERGFAYAHDAPLDMRMDPTTGPTAADVLNTYDERDIARVLRVYGEERFAARIARGVVRF 180

Query: 180 RQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R+  P   T +L  +++  V  + +    HPA R+FQALRI VN E+  L + L +A   
Sbjct: 181 RERTPLTRTSELVDIVRAGVPAATRRTGGHPAKRTFQALRIEVNGELAALERALPAAIDV 240

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L  GG ++V S+ SLEDRLVK+  A+ +         +    H    + +T+      + 
Sbjct: 241 LAVGGRIVVESYQSLEDRLVKRALAAGATSSAPPDLPVEPVTHAPYLRLLTRGAEEADEA 300

Query: 299 DVAFNRRSRSAKLRAGMR 316
           ++A N R++S +LRA  R
Sbjct: 301 ELARNPRAQSVRLRAAER 318


>gi|134302412|ref|YP_001122382.1| S-adenosyl-methyltransferase MraW [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|263447543|sp|A4IZB0|RSMH_FRATW RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|134050189|gb|ABO47260.1| S-adenosyl-methyltransferase MraW [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 299

 Score =  319 bits (818), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 115/303 (37%), Positives = 177/303 (58%), Gaps = 16/303 (5%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMRDYK 82
           +++ I  LN  P  + +DATFG GG+S++         +IA D+D  A+S  +E  +   
Sbjct: 1   MQESINDLNINPQGIYIDATFGRGGHSKAILNRLTTGRLIAFDKDLDAISYARENFQF-- 58

Query: 83  EQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138
             F +  A+F+ + DY         +DG++ DLGVSS Q+D   RGFSF  +GPLDMRM 
Sbjct: 59  SNFEIVHASFASIYDYCLQHSLLGKIDGIIMDLGVSSPQLDNAARGFSFTHNGPLDMRMD 118

Query: 139 CS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTTQDLSSLIQ 196
            S GI+AS  + + +V DL+ I  + GEE+ A +IA  I    +Q+   +TT +L+ LI+
Sbjct: 119 VSKGITASQALEELSVDDLSYIFKVYGEERFAKKIALRIKDYIQQNGSIRTTLELAELIR 178

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
            T+   K  + +PATR FQALRI+VNNE+++L   L +    +K+GG + V+SFHSLEDR
Sbjct: 179 ATI--GKKEKKNPATRCFQALRIYVNNELKDLEALLENILAVIKSGGRIAVISFHSLEDR 236

Query: 257 LVKKFFASRSGKVMAVRH---MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           +VK+ F++       +     M+P ++     + ITKK     ++++  N RSRSA LR 
Sbjct: 237 IVKQKFSALINPKQELNRITKMLPQDSSQIKLKWITKKS-KANEDELNQNVRSRSAILRV 295

Query: 314 GMR 316
             +
Sbjct: 296 VEK 298


>gi|289704963|ref|ZP_06501378.1| S-adenosyl-methyltransferase MraW [Micrococcus luteus SK58]
 gi|289558299|gb|EFD51575.1| S-adenosyl-methyltransferase MraW [Micrococcus luteus SK58]
          Length = 349

 Score =  319 bits (818), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 107/314 (34%), Positives = 172/314 (54%), Gaps = 15/314 (4%)

Query: 20  HVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPF 69
           H+PV+ ++V+ LL PA           V +D T G GG++ +      ++  I +DRD  
Sbjct: 30  HLPVMRDRVVDLLAPAVQAALEAGRTPVAVDGTLGMGGHTEALLTRFPHLRVIGIDRDVH 89

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFS 126
           A +   E +    ++   F  T+ ++ + +   GV   D  ++DLGVSS Q+D  +RGF+
Sbjct: 90  AQAMAAERLGPLADRLIPFHGTYDRVPEAMAAAGVTKVDAALYDLGVSSYQLDDRERGFA 149

Query: 127 FQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           +    PLDMRM   +  SA+ +V + + ++L RI+   GEE+ A  IA AIV+ R  AP 
Sbjct: 150 YSYDAPLDMRMDDTAERSAATLVAELDEQELRRIIRRDGEERFAGPIARAIVRARDEAPI 209

Query: 186 QTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           +TT  L  +I+  V   +     HPA R+FQALRI VN E++ L   + +   AL  GG 
Sbjct: 210 ETTGRLVEVIRSAVPVAAGATGGHPAKRTFQALRIAVNEELDILDAAVPAILDALHVGGR 269

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           L+V+S+HSLEDR+ K+  ++ +         +    H  V + +T+    PT+E+++ NR
Sbjct: 270 LVVMSYHSLEDRITKRHLSAWATSTAPPGFPVVLEEHEPVVRVLTRGTEKPTEEEISENR 329

Query: 305 RSRSAKLRAGMRTV 318
           R+ SAK+RA  +  
Sbjct: 330 RASSAKVRAVEKIR 343


>gi|213691742|ref|YP_002322328.1| S-adenosyl-methyltransferase MraW [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|263445910|sp|B7GQ70|RSMH_BIFLI RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|213523203|gb|ACJ51950.1| S-adenosyl-methyltransferase MraW [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320457836|dbj|BAJ68457.1| S-adenosyl-methyltransferase [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 359

 Score =  319 bits (817), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 114/307 (37%), Positives = 160/307 (52%), Gaps = 11/307 (3%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           H+PVLL+  + L+ PA      V +D T G  G+S +F K      +I +DRD  A+   
Sbjct: 8   HLPVLLDDCVNLMAPALEHENAVAVDCTLGLAGHSIAFLKTAPQARLIGIDRDSEALGLA 67

Query: 75  QETMRDYK--EQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK 129
            E M      ++F    A F QL   + D+G   VD V  DLG+SS+QID  DRGFS+  
Sbjct: 68  AERMEREGLADRFIPVHAAFDQLDQVLTDRGIERVDAVFMDLGLSSLQIDETDRGFSYSH 127

Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM  S  ++A  ++   +  +L RI    GEE+ + +IA AIV  R   PF TT
Sbjct: 128 DAPLDMRMDVSQPLTAERILATYDAAELVRIFKEYGEERFSRQIARAIVAHRDKEPFTTT 187

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ L+ + V  +     +PA R FQALRI VN E+++LA  L  A   L  GG L+V 
Sbjct: 188 AQLNRLVDEVVPQAHRPAGNPAKRVFQALRIEVNGELDKLASTLPQAANRLHVGGRLVVE 247

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           S+HSLED+ VK F A      +     +        F  +T+  +   + ++A N RS S
Sbjct: 248 SYHSLEDKTVKSFMAQGLRVDVPAGLPVIPPDAQPFFTDLTRGAIKADEHEIAANPRSAS 307

Query: 309 AKLRAGM 315
            +LRA  
Sbjct: 308 VRLRAVE 314


>gi|283956102|ref|ZP_06373589.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|283792422|gb|EFC31204.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp.
           jejuni 1336]
          Length = 310

 Score =  319 bits (817), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 101/302 (33%), Positives = 158/302 (52%), Gaps = 9/302 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76
            H+PVLL +V  +         LD T G GG+S +  K   ++  IA D+D  A+   ++
Sbjct: 4   PHIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKNHPDLKFIACDQDQQALEFSKK 63

Query: 77  TMRDYKEQFSLFQATFSQ-LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
            ++D+  + +  Q+ FS+ L+     + + G++ D+GVSS Q+D  +RGFS      LDM
Sbjct: 64  RLKDFHNRITFIQSNFSEVLEKISHKEELRGILADIGVSSFQLDNNERGFSVNSD-FLDM 122

Query: 136 RMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM+  S ISA +++N    + LT I    GE   A  IA  I   R   P ++ ++L  +
Sbjct: 123 RMNQNSKISAYEIINTYTKEQLTSIFKDYGELHDAHFIAEKICLERSKNPIKSAKELYQI 182

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           I K      + +I  AT +FQA+RI VN E++ L   L   E       +L ++SFHSLE
Sbjct: 183 IGK--GKQNHRKISKATLAFQAIRIEVNQELKVLKDFLGHLENLKPKNCILTIISFHSLE 240

Query: 255 DRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           DR+VK FF   S   +    +       + ++ Q ITKK +  ++E++  N RS  AK+R
Sbjct: 241 DRIVKNFFKKWSKNCICDEKIMRCECGNNHSLGQIITKKAISASKEELLKNSRSSCAKMR 300

Query: 313 AG 314
           A 
Sbjct: 301 AF 302


>gi|325995985|gb|ADZ51390.1| rRNA small subunit methyltransferase H [Helicobacter pylori 2018]
 gi|325997580|gb|ADZ49788.1| S-adenosyl methyltransferase [Helicobacter pylori 2017]
          Length = 308

 Score =  319 bits (817), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 112/311 (36%), Positives = 175/311 (56%), Gaps = 14/311 (4%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70
           +      H  VLL++V+    P    V++D T G GG+S++      +  +I +D+D FA
Sbjct: 1   MQEIENLHQSVLLQEVLQAFTPLEEGVLIDCTLGLGGHSKAILSQKPHLKLIGIDKDKFA 60

Query: 71  VSCGQETMRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSF 127
               +E +++++ +++L    F++  ++ +   G  + GV+ DLGVSS+Q+D  +RGF+F
Sbjct: 61  QEIAKERLKEFEGRYNLLSGGFAKRFKEALEIHGERIKGVLVDLGVSSLQLDDDNRGFNF 120

Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           +    LDMRM   S ++A  V+N   V  L +I    GE K+  +IAH I +RR   PF+
Sbjct: 121 RS-HALDMRMDLESELNAQKVINSYPVVALEKIFRDYGEIKEYKKIAHKIAERRAKKPFK 179

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
             +DLS  +      SKN +IHPAT  FQA+RI VN+E+EEL + L+ A      G +L 
Sbjct: 180 DAKDLSEFLSS---LSKNKKIHPATLVFQAVRIEVNSELEELKEFLQYARNL--KGAILC 234

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           V+SFHSLED LVK  F   +   +          + + A+   +TKK + P+ E++  NR
Sbjct: 235 VISFHSLEDGLVKNAFKDYAKNCICDPSSFKCACSNNHALGAILTKKPITPSPEEIKNNR 294

Query: 305 RSRSAKLRAGM 315
           RSRSAK+R   
Sbjct: 295 RSRSAKMRVFQ 305


>gi|307637393|gb|ADN79843.1| rRNA small subunit methyl transferase H [Helicobacter pylori 908]
          Length = 308

 Score =  319 bits (817), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 112/311 (36%), Positives = 173/311 (55%), Gaps = 14/311 (4%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70
           +      H  VLL++V+    P    V++D T G GG+S++      +  +I +D+D FA
Sbjct: 1   MQEIENLHQSVLLQEVLQAFTPLEEGVLIDCTLGLGGHSKAILSQKPHLKLIGIDKDKFA 60

Query: 71  VSCGQETMRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSF 127
               +E +++++ +++L    F++  ++ +   G  + GV+ DLGVSS+Q+D  +RGF+F
Sbjct: 61  QEIAKERLKEFEGRYNLLSGGFAKRFKEALEIHGERIKGVLVDLGVSSLQLDDDNRGFNF 120

Query: 128 QKSGPLDMRMSCSGIS-ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           +    LDMRM     S A  V+N   V  L +I    GE K+  +IAH I +RR   PF+
Sbjct: 121 RS-HALDMRMDLESESNAQKVINSYPVVALEKIFRDYGEIKEYKKIAHKIAERRAKKPFK 179

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
             +DLS  +      SKN +IHPAT  FQA+RI VN+E+EEL + L+ A      G +L 
Sbjct: 180 DAKDLSEFLSS---LSKNKKIHPATLVFQAVRIEVNSELEELKEFLQYARNL--KGAILC 234

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           V+SFHSLED LVK  F   +   +          + + A+   +TKK + P+ E++  NR
Sbjct: 235 VISFHSLEDGLVKNAFKDYAKNCICDPSSFKCACSNNHALGAILTKKPITPSPEEIKNNR 294

Query: 305 RSRSAKLRAGM 315
           RSRSAK+R   
Sbjct: 295 RSRSAKMRVFQ 305


>gi|189347978|ref|YP_001944507.1| S-adenosyl-methyltransferase MraW [Chlorobium limicola DSM 245]
 gi|263445795|sp|B3EIL6|RSMH_CHLL2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|189342125|gb|ACD91528.1| S-adenosyl-methyltransferase MraW [Chlorobium limicola DSM 245]
          Length = 322

 Score =  319 bits (817), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 109/318 (34%), Positives = 163/318 (51%), Gaps = 21/318 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--------VIALDRDPFAV 71
           H PVL  +V+ LL   P  V +D T G GG+S +  +            +I +D+D  A+
Sbjct: 7   HEPVLAAEVLQLLVRMP-GVYVDGTLGGGGHSLAILEELERKGFLADSFLIGIDQDDHAL 65

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPD--------KGVDGVVFDLGVSSMQIDCGDR 123
               E +  +    ++ +  FS +   V            V G++ DLGVSS QID  +R
Sbjct: 66  KAASEKLSGFSGSTAIIKGNFSAIAAIVRKISAERHFTDSVAGILLDLGVSSAQIDTPER 125

Query: 124 GFSFQKSGPLDMRMSCSGIS-ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GFS+ +SGPLDMRM     S A+D+VN  + ++L  +    GEE ++  IA  I+  R+ 
Sbjct: 126 GFSYMRSGPLDMRMDPEAESSAADLVNTLSERELVTLFFRYGEEPRSRSIARGIIDYREK 185

Query: 183 AP-FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
                 T++L+ +I +      +  I   +R FQALR+ VN E+E L Q L      L A
Sbjct: 186 HGSILRTEELAEII-RLREARPDRVIKTLSRVFQALRVEVNRELEVLEQVLADGASLLSA 244

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM-IPSNAHPAVFQSITKKVVVPTQEDV 300
            G L V+S+HSLEDR+VK FF ++S      R + +      A F  +T+K V   Q+++
Sbjct: 245 QGRLAVISYHSLEDRMVKSFFTAQSSSDWGPRGVGLTEPLKKAEFAVVTRKPVASGQQEL 304

Query: 301 AFNRRSRSAKLRAGMRTV 318
           + N RSRSAKLR   +  
Sbjct: 305 SLNPRSRSAKLRVLEKLA 322


>gi|217076157|ref|YP_002333873.1| S-adenosyl-methyltransferase MraW [Thermosipho africanus TCF52B]
 gi|262825832|sp|B7IEL8|RSMH_THEAB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|217036010|gb|ACJ74532.1| S-adenosyl-methyltransferase MraW [Thermosipho africanus TCF52B]
          Length = 291

 Score =  319 bits (817), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 99/307 (32%), Positives = 160/307 (52%), Gaps = 30/307 (9%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76
            H+PV+ ++VI  L      + +D T G GG++     +  +  VI LD D   ++  ++
Sbjct: 7   KHIPVMPKEVIEHLIWKKDGIYVDCTVGEGGHTLLLASISPDIFVIGLDIDSEVLNIAEK 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  +     LF++++  L   +     + V G++ DLG+S+ Q+    RGF+F +  PL
Sbjct: 67  NLSSF-TNVKLFKSSYVDLPVVLKALNIEKVSGILIDLGISTYQLKAEGRGFTFNRDEPL 125

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+     +A DVVN  + K+L  I+   GEE+ + RIA +IV  R   P  +T +L 
Sbjct: 126 DMRMNLEQKKTAYDVVNFYSEKELADIIFKYGEERFSRRIARSIVNSR---PINSTLELV 182

Query: 193 SLIQKTVYFS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
             I+K +     +  + H AT++FQA+RI VN E+  +   L +    L+ GG L V+SF
Sbjct: 183 EAIRKALPPQEIRKRKRHFATKTFQAIRIEVNGELSNIENFLNNVPDLLEIGGRLAVISF 242

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDRLVK F  + +                   + I    ++P++E++  N R+RSAK
Sbjct: 243 HSLEDRLVKHFIKNSNK-----------------LRQIV-GPIIPSKEEIDENPRARSAK 284

Query: 311 LRAGMRT 317
           LR   R 
Sbjct: 285 LRIAERI 291


>gi|148243357|ref|YP_001228514.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. RCC307]
 gi|262825772|sp|A5GWA2|RSMH_SYNR3 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|147851667|emb|CAK29161.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. RCC307]
          Length = 299

 Score =  319 bits (817), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 114/322 (35%), Positives = 167/322 (51%), Gaps = 38/322 (11%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPG-KVILDATFGAGGYSRSFCKMGS--NVIALD 65
           MSS+ H     H PVL ++V+  L   P   V+LDAT G GG+S     +     +I LD
Sbjct: 1   MSSSFH-----HQPVLPQQVLEALAELPDEGVLLDATVGGGGHSSLLLDVHPGWQLIGLD 55

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125
           +DP A +   + +  + E+  L  + F+    Y PD+ V  V+ DLGVSS Q+D  +RGF
Sbjct: 56  QDPAARAAAAQQLERFGERVQLVASNFA---AYTPDQPVVAVLADLGVSSHQLDVPERGF 112

Query: 126 SFQKSGPLDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           SF+  GPLDMRM+  G   +A+ ++++     L  +L   GEE+ + RIA  +   +   
Sbjct: 113 SFRADGPLDMRMNTEGDGETAAALIDRLEENALADLLFHYGEERLSRRIARRL---KTEG 169

Query: 184 PFQ----TTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           P+      T  L+  I        ++ RIH ATRSFQALRI VN+E+  L   L  A   
Sbjct: 170 PWDDGERGTAALAYAIAGCYPPKQRHGRIHAATRSFQALRIAVNDELGVLETLLNDAPNW 229

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L+ GG + V+SFHSLEDRLVK  F +                     + I++K ++ +++
Sbjct: 230 LEPGGRIAVISFHSLEDRLVKNRFKADE-----------------RLRVISRKPLIASEQ 272

Query: 299 DVAFNRRSRSAKLRAGMRTVER 320
           +   N R+RSAKLR   R    
Sbjct: 273 EAEANPRARSAKLRVAERLSAE 294


>gi|332976677|gb|EGK13517.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Psychrobacter sp. 1501(2011)]
          Length = 347

 Score =  319 bits (817), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 109/353 (30%), Positives = 179/353 (50%), Gaps = 39/353 (11%)

Query: 9   MSSAIHHTIGD---------HVPVLLEKVIALL---------------NPAPGKVILDAT 44
           M+  +     +         H  VLL + +A +               +P    + +DAT
Sbjct: 1   MTDTVSSAAANPSSPKADFSHETVLLYETVAAVLGKNPTKKSSKATDSDPKVSGIFVDAT 60

Query: 45  FGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD 101
           FG GG+S+   +  S+   +   D+DP A++  +E  +    + ++   +F+ +   + +
Sbjct: 61  FGRGGHSKLLLESLSDDGQLFVFDKDPEAIAVAEEIAKS-DNRVTVVHDSFANITHCLNE 119

Query: 102 KG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLT 157
            G   V+G++ DLGVSS Q+D G RGFSF + G +DMRM  S G S  + +   + ++L 
Sbjct: 120 HGITQVNGIMADLGVSSPQLDDGSRGFSFMRDGAIDMRMDTSRGQSVGEWLETVDEEELA 179

Query: 158 RILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQAL 217
            +L   GEE+ + RIA AI   +Q   + +T +L+ +I++  +       HPAT+SFQA+
Sbjct: 180 NVLYDFGEERHSRRIARAI---KQMERYTSTLELAEVIKQA-HPKWQKGKHPATQSFQAM 235

Query: 218 RIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP 277
           RIF+NNE+ ++   L+ +   L   G L V+SFHSLEDR +K+F    S         +P
Sbjct: 236 RIFINNELGDIDSFLQQSLTLLAPEGQLAVISFHSLEDRRIKQFLQRHSRGQYPEDENLP 295

Query: 278 SNAHPAVFQSITK-KVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDDSFVH 329
               P   +  +K K + P++ +V+ N RSRSA LR   RT        S +H
Sbjct: 296 --MPPVRPRYFSKPKRIAPSKAEVSVNNRSRSAWLRVATRTDTPYNNAPSELH 346


>gi|223040364|ref|ZP_03610639.1| S-adenosyl-methyltransferase MraW [Campylobacter rectus RM3267]
 gi|222878322|gb|EEF13428.1| S-adenosyl-methyltransferase MraW [Campylobacter rectus RM3267]
          Length = 310

 Score =  319 bits (817), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 95/301 (31%), Positives = 162/301 (53%), Gaps = 8/301 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76
            HVPVLL++V+         VI+D T G GG+S +  +   N  +IA D+D  A++   E
Sbjct: 4   PHVPVLLDEVLRAFEGIKSGVIVDCTLGYGGHSGAILEQNQNVNLIACDQDEEAINFSSE 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
            ++ + ++  +F++ FS++ + +    + G++ D+GVSS+Q+D  +RGF  +    LDMR
Sbjct: 64  RLKKFGQRAQIFKSKFSEILNKIEQTQIRGILADIGVSSLQLDKNERGFGLKSEN-LDMR 122

Query: 137 MS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M   +  SA DVVN  + ++L RI    GE    ++ A  IV+ RQ+   ++ + L+ +I
Sbjct: 123 MDAQAKFSAYDVVNSYSARELERIFEGYGELPNPAKFAAKIVEARQNGEIKSAERLAQII 182

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
              +       +  AT +FQA+RI VNNE+ EL   L+  E +     ++ ++ FHSLED
Sbjct: 183 --GLKGVNGRSVSAATLAFQAIRIEVNNELGELQNLLQGIEDSQIDECVVAIIGFHSLED 240

Query: 256 RLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           R+VK  F   +   +     +        A+ + ++KK + P+  +V  N RS  AK+R 
Sbjct: 241 RIVKNKFKQWAQSCICPPQALKCTCGGDNALGKIVSKKAITPSAAEVKANPRSSCAKMRI 300

Query: 314 G 314
            
Sbjct: 301 F 301


>gi|301165427|emb|CBW24998.1| putative S-adenosyl-methyltransferase [Bacteriovorax marinus SJ]
          Length = 325

 Score =  319 bits (817), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 108/322 (33%), Positives = 171/322 (53%), Gaps = 29/322 (9%)

Query: 19  DHVPVLLEKVIALLNPAPGKV----ILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVS 72
            H  VL ++V+ +L     ++      D TFGAGG++ +  +   NV   ++D+DP A+ 
Sbjct: 5   KHYSVLNKEVVDILMEDSEQLQNIKFADMTFGAGGHTFALAESAKNVSVYSVDQDPDALK 64

Query: 73  CGQETMRDYK--EQFSLFQATFSQLQDYVP----DKGVDGVVFDLGVSSMQIDCGDRGFS 126
            G+E + +    E+  L    F Q  +++     +   +G+V DLGVSS   D GDRGFS
Sbjct: 65  NGKENINELGLSERVFLHDMNFEQFPEFIRSSDSEMKFNGIVADLGVSSHHFDEGDRGFS 124

Query: 127 FQKSGPLDMRMSCSG---ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           F+   PLDMRM        +A+D+VN  + +DL +I    GEEK   RI  +I++ R+SA
Sbjct: 125 FRFDAPLDMRMDVDNDELETAADIVNNYSKEDLEKIFFTYGEEKFTHRIVKSILEHRESA 184

Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           P +TT+ L  +I        +  +I+PAT+ FQALRI VN E++ L   +    + L+  
Sbjct: 185 PIETTKQLEKIIIDCYPKKLQFGKINPATKCFQALRIKVNKELDVLENVIPGLLELLEIN 244

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G L +++FHSLEDR+VK  F       +              ++   KK ++P+  ++  
Sbjct: 245 GRLAIITFHSLEDRIVKNLFKDAVQSDVP-------------YELYNKKPILPSHGELEE 291

Query: 303 NRRSRSAKLRAGMRTVERSIED 324
           N RSRSAKLR   +  E+  ++
Sbjct: 292 NPRSRSAKLRVITKINEKKSKN 313


>gi|227875248|ref|ZP_03993390.1| S-adenosyl-methyltransferase [Mobiluncus mulieris ATCC 35243]
 gi|307700815|ref|ZP_07637840.1| S-adenosyl-methyltransferase MraW [Mobiluncus mulieris FB024-16]
 gi|227844153|gb|EEJ54320.1| S-adenosyl-methyltransferase [Mobiluncus mulieris ATCC 35243]
 gi|307613810|gb|EFN93054.1| S-adenosyl-methyltransferase MraW [Mobiluncus mulieris FB024-16]
          Length = 340

 Score =  318 bits (816), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 113/324 (34%), Positives = 180/324 (55%), Gaps = 12/324 (3%)

Query: 11  SAIHHTIGDHVPVLLEKVIALLNPA----PGKVILDATFGAGGYSRSFCKMGSNV--IAL 64
           S I  T   H PVL+++ + LL PA       V++DAT G GG+S +  +   ++  I +
Sbjct: 2   STITPTAAIHQPVLVQRCVELLAPALIPVERPVLVDATVGLGGHSEALLQRFPHLQIIGI 61

Query: 65  DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCG 121
           DRD  A +   + +  +  +  +  AT+ QL + + ++G   VDG++ DLGVSS+Q+D  
Sbjct: 62  DRDGEARALAGKRLSVFGSRIEIVAATYGQLAEILAERGLETVDGILADLGVSSLQLDET 121

Query: 122 DRGFSFQ-KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            RGF++     PLDMRM  S GI+A+  +   +  ++ R+L   GEEK A +IA  IVK 
Sbjct: 122 ARGFAYAIPEAPLDMRMDQSRGITAAQFIATTSETEIARVLRTYGEEKFARQIARNIVKT 181

Query: 180 RQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R+  P +TT +L  LI+ T+   ++ +  +PA R+FQALR+ VN+E+ +L   L +A  A
Sbjct: 182 REVTPLRTTGELVDLIRATIPAPARRHGGNPAKRTFQALRVAVNDELRDLEVFLTAALDA 241

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L+ GG L+V S+ SLEDRLVK+ F       +     +    +    Q +T+        
Sbjct: 242 LRVGGRLVVESYQSLEDRLVKQAFTPGIHPEVPRGLPVIPTGYEPWLQDLTRGAEKADAL 301

Query: 299 DVAFNRRSRSAKLRAGMRTVERSI 322
           ++  N RS+S +LRA  +  E + 
Sbjct: 302 ELQRNSRSQSVRLRAVAKLREMAP 325


>gi|317968143|ref|ZP_07969533.1| 16S rRNA m(4)C1402 methyltranserfase [Synechococcus sp. CB0205]
          Length = 292

 Score =  318 bits (816), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 110/307 (35%), Positives = 163/307 (53%), Gaps = 32/307 (10%)

Query: 22  PVLLEKVIA-------LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVS 72
           PVL  +V+A       LL    G +++D T G GG+S    +      ++ LD+DP A  
Sbjct: 2   PVLAAQVLASFTALEPLLQERGGGLLIDCTLGGGGHSALLLEAHPGLKLVGLDQDPTARQ 61

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              E +  + ++ S+    F+   DY P +    V+ DLGVSS Q+D  +RGFSF+  GP
Sbjct: 62  AAAERLEPFGDRVSIVATNFA---DYQPQEPALAVMADLGVSSPQLDVAERGFSFRHDGP 118

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTTQD 190
           LDMRM+   G +A++++ +    +L  ++   GEE+ + RIA  I +   +  PF  T  
Sbjct: 119 LDMRMNPQAGETAAELIERLEETELADLIYAYGEERLSRRIARKIKQHLAEQGPFAGTDA 178

Query: 191 LSSLIQKT-VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L+ L+       ++  RIHPATR+FQALRI VN+E+  L + L+ A   L+ GGL+ V+S
Sbjct: 179 LAYLVAGCYAPKARRGRIHPATRTFQALRIAVNDELGVLDRLLQQAPDWLEPGGLMGVIS 238

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDR VK  F+S                     Q +T+K     +E+ + N RSRSA
Sbjct: 239 FHSLEDRRVKTAFSSDE-----------------RLQRVTRKPETAGEEEQSSNPRSRSA 281

Query: 310 KLRAGMR 316
           K R   R
Sbjct: 282 KWRVARR 288


>gi|306836499|ref|ZP_07469470.1| S-adenosyl-methyltransferase MraW [Corynebacterium accolens ATCC
           49726]
 gi|304567589|gb|EFM43183.1| S-adenosyl-methyltransferase MraW [Corynebacterium accolens ATCC
           49726]
          Length = 346

 Score =  318 bits (816), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 113/317 (35%), Positives = 165/317 (52%), Gaps = 20/317 (6%)

Query: 20  HVPVLLEKVIALLNPA-----PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVS 72
           HVPV+ E++  LL P         V++DAT GAGG+S  F +      VI +DRD  A+ 
Sbjct: 16  HVPVMRERMAELLRPGVEAAGSQAVLVDATLGAGGHSEYFLQTFPQARVIGVDRDEQALQ 75

Query: 73  CGQETMRDYKEQFSLFQATFSQLQ-----------DYVPDKGVDGVVFDLGVSSMQIDCG 121
                +  +  +F    A F +L            D     G+ G +FDLGVSSMQ+D  
Sbjct: 76  NASARLEPFGPRFCAVNARFDELGTAIAQGEGDIFDAARAHGIAGALFDLGVSSMQLDQA 135

Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGF+++   PLDMRM  S G++A+DV+N  +  DL RIL   G+E+ A +IA A++K R
Sbjct: 136 ERGFAYKTDAPLDMRMDPSHGLTAADVLNSYSHGDLARILKTYGDERFAGKIASAVLKER 195

Query: 181 QSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
           +  PF T+  L  L+  T+  + +    HPA R+FQALR+ VN E+E +   L     AL
Sbjct: 196 EKEPFSTSGRLVELLYSTIPAATRRTGGHPAKRTFQALRVEVNRELEAIENVLPVITSAL 255

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
             G   + +S+ SLEDRLVK  F   S         +        F ++T+     +Q +
Sbjct: 256 SIGARAVFMSYQSLEDRLVKAAFKELSTSTTPAGLPMDLPGTAPEFATVTRGAEKASQAE 315

Query: 300 VAFNRRSRSAKLRAGMR 316
           V  N R+ S ++RA  R
Sbjct: 316 VEENSRAASVRVRALER 332


>gi|269978137|ref|ZP_06185087.1| S-adenosyl-methyltransferase MraW [Mobiluncus mulieris 28-1]
 gi|269933646|gb|EEZ90230.1| S-adenosyl-methyltransferase MraW [Mobiluncus mulieris 28-1]
          Length = 340

 Score =  318 bits (816), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 113/323 (34%), Positives = 180/323 (55%), Gaps = 12/323 (3%)

Query: 11  SAIHHTIGDHVPVLLEKVIALLNPA----PGKVILDATFGAGGYSRSFCKMGSNV--IAL 64
           S I  T   H PVL+++ + LL PA       V++DAT G GG+S +  +   ++  I +
Sbjct: 2   STITPTAAIHQPVLVQRCVELLAPALIPVERPVLVDATVGLGGHSEALLQRFPHLQIIGI 61

Query: 65  DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCG 121
           DRD  A +   + +  +  +  +  AT+ QL + + ++G   VDG++ DLGVSS+Q+D  
Sbjct: 62  DRDGEARALAGKRLSVFGSRIEIVAATYGQLAEILAERGLETVDGILADLGVSSLQLDET 121

Query: 122 DRGFSFQ-KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            RGF++     PLDMRM  S GI+A+  +   +  ++ R+L   GEEK A +IA  IVK 
Sbjct: 122 ARGFAYAIPEAPLDMRMDQSRGITAAQFIATTSETEIARVLRTYGEEKFARQIARNIVKT 181

Query: 180 RQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R+  P +TT +L  LI+ T+   ++ +  +PA R+FQALR+ VN+E+ +L   L +A  A
Sbjct: 182 REVTPLRTTGELVDLIRATIPAPARRHGGNPAKRTFQALRVAVNDELRDLEVFLTAALDA 241

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L+ GG L+V S+ SLEDRLVK+ F       +     +    +    Q +T+        
Sbjct: 242 LRVGGRLVVESYQSLEDRLVKQAFTPGIHPEVPRGLPVIPTGYEPWLQDLTRGAEKADAL 301

Query: 299 DVAFNRRSRSAKLRAGMRTVERS 321
           ++  N RS+S +LRA  +  E +
Sbjct: 302 ELQRNSRSQSVRLRAVAKLREMA 324


>gi|162148953|ref|YP_001603414.1| S-adenosyl-methyltransferase MraW [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209545294|ref|YP_002277523.1| S-adenosyl-methyltransferase MraW [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|263455983|sp|A9H0G9|RSMH_GLUDA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|161787530|emb|CAP57126.1| S-adenosyl-methyltransferase mraW [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209532971|gb|ACI52908.1| S-adenosyl-methyltransferase MraW [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 338

 Score =  318 bits (815), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 117/298 (39%), Positives = 168/298 (56%), Gaps = 14/298 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQETM 78
           H+PV+L +V+ +L P  G   LD TFG GGY+R+        + A+DRDP A+  GQ   
Sbjct: 9   HIPVMLAEVLEMLCPRDGATYLDGTFGGGGYARAILGAARCTLWAIDRDPAAIRRGQALQ 68

Query: 79  RDYKE-----QFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130
            + ++     +  + Q  F  +Q  + + GV   DGVV DLGVSS Q+D  +RGFSF+  
Sbjct: 69  AELRDAEGGMRLHMLQGGFGDMQGLLAESGVHSLDGVVLDLGVSSFQLDEVERGFSFRTD 128

Query: 131 GPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           GPLDMRM  +G +A+D+VN     DL  I+   GEE+ + R+A AIV  R  AP  TT  
Sbjct: 129 GPLDMRMGDTGPTAADIVNTMGESDLADIIYEYGEERMSRRVARAIVAARAQAPITTTFQ 188

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ +I+  V   + + I PATRSFQ +RI VN+E+ ++  GL  A   L  GG L+VVSF
Sbjct: 189 LADIIRSVVPGDR-SGIDPATRSFQGIRIHVNDELGQIVTGLEQALALLAPGGRLVVVSF 247

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIP----SNAHPAVFQSITKKVVVPTQEDVAFNR 304
           HSLEDRLVK+     +G++       P    +      F+ +T + + P + +   N 
Sbjct: 248 HSLEDRLVKQALNRAAGRMPGPSRHDPRSMRAEQAAPDFRLLTSRALRPGETECRANP 305


>gi|188527446|ref|YP_001910133.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori Shi470]
 gi|226709922|sp|B2UTC1|RSMH_HELPS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|188143686|gb|ACD48103.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori Shi470]
          Length = 308

 Score =  318 bits (815), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 113/304 (37%), Positives = 173/304 (56%), Gaps = 14/304 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H  VLL++V+    P    V++D T G GG+S++      +  +I +D+D FA    +E 
Sbjct: 8   HQSVLLQEVLQAFAPLEEGVLIDCTLGLGGHSKAILSQKPHLKLIGIDKDKFAQEIAKER 67

Query: 78  MRDYKEQFSLFQATFSQ-LQDYVP--DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++ ++ +++L    F++  ++ +   DK + GV+ DLGVSS+Q+D   RGF+F  S  LD
Sbjct: 68  LKAFEGRYNLLSGGFAKRFKEALEMHDKEIKGVLVDLGVSSLQLDDDSRGFNF-HSHALD 126

Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM   S ++A  V+N   V  L +I    GE K+  +IAH I +RR   PF+  +DLS 
Sbjct: 127 MRMDLESDLNAQKVINSYPVVALEKIFKDYGEIKEYKKIAHKIAERRAKKPFKDAKDLSD 186

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
            +      SKN +IHPAT  FQA+RI VN+E+EEL + L+ A        +L V+SFHSL
Sbjct: 187 FLSS---LSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCARNL--KEAILCVISFHSL 241

Query: 254 EDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           ED LVK  F   +   +          + + A+ + +TKK + P+ E++  NRRSRSAK+
Sbjct: 242 EDALVKNAFKDYAKNCICDPSSFKCTCSNNHALGEILTKKPITPSPEEIKNNRRSRSAKM 301

Query: 312 RAGM 315
           R   
Sbjct: 302 RVFQ 305


>gi|91094747|ref|XP_971437.1| PREDICTED: similar to s-adenosyl-methyl transferase mraw [Tribolium
           castaneum]
 gi|270010790|gb|EFA07238.1| hypothetical protein TcasGA2_TC010595 [Tribolium castaneum]
          Length = 451

 Score =  318 bits (815), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 120/330 (36%), Positives = 179/330 (54%), Gaps = 30/330 (9%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQ 75
             HVPV++++V+  L P   + ILD TFGAGG+SR   +   N  ++ALDRDP A    Q
Sbjct: 121 APHVPVMVQEVLHFLKPEGNQTILDMTFGAGGHSRRILEQAPNVKLLALDRDPVAFGYAQ 180

Query: 76  ETMRDYKEQFSLFQATFSQLQDYV-----PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
           +   ++  + +     FS++ + +         +D ++FD G SSMQ D   RGFS   +
Sbjct: 181 KLAEEFPNRVTPLLGRFSEVPELLSLNKIRQNSIDAILFDFGCSSMQFDTPSRGFSVSHN 240

Query: 131 GPLDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APF 185
           GPLDMRM         +A+DV+ +A  +DL +I+ + GEEK+A +IA A+++ R      
Sbjct: 241 GPLDMRMDSGRFPEDPTAADVLAKATEEDLYKIIKVYGEEKKARKIARAVIEARYLFKTL 300

Query: 186 QTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
            TT++L+ L+                 H AT++FQALRIFVNNE+ E+  GL  A K LK
Sbjct: 301 STTEELADLVDSVFSGEIRLDKLQRPSHNATKTFQALRIFVNNELNEINYGLIIAHKYLK 360

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-------------PAVFQS 287
            GG ++ ++FHSLED +VK+               +  ++H              + + S
Sbjct: 361 LGGRVVTLTFHSLEDTIVKRHLLGNLIANTPNPLPLKYSSHSFDVDGQIVKEVMESNWLS 420

Query: 288 ITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           +TK V+VP  E+V  N RSRSAKLRA +R 
Sbjct: 421 LTKHVLVPKYEEVENNPRSRSAKLRAAIRV 450


>gi|332283258|ref|YP_004415169.1| S-adenosyl-methyltransferase MraW [Pusillimonas sp. T7-7]
 gi|330427211|gb|AEC18545.1| S-adenosyl-methyltransferase MraW [Pusillimonas sp. T7-7]
          Length = 357

 Score =  318 bits (815), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 120/332 (36%), Positives = 181/332 (54%), Gaps = 31/332 (9%)

Query: 20  HVPVLLEKVIALLNP------------------APGKVILDATFGAGGYSRSFCKMGS-- 59
           H PVLLE  +  L                        V +D TFG GG+SR      S  
Sbjct: 5   HRPVLLEPTVNALVDPGFGVKGKRSQMRDDSQALADGVFVDGTFGRGGHSRLLLSRLSPD 64

Query: 60  -NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSS 115
             ++  D+DP A++  Q  +R   E+  +  + F+ +   +   G   V+GV+ DLG+SS
Sbjct: 65  AKLVVFDKDPEAIAAAQA-LRQEDERVVVVHSGFANMPAQLQALGITEVNGVMLDLGISS 123

Query: 116 MQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAH 174
            QID   RGFSF + GPLDMRM  S G++A+  + Q ++ +L  ++   GEE+ A +IA 
Sbjct: 124 PQIDDASRGFSFMREGPLDMRMDTSSGLTAAQWLAQVDIDELKEVIAKYGEERFAFQIAK 183

Query: 175 AIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234
           A++ RR+S P +TT DL+ L+   V  ++    HPATR+FQA+RI++N E++ELA  L +
Sbjct: 184 AVIARRESRPLRTTLDLAELVASVV-RTREKGQHPATRTFQAIRIYLNQELQELALALAA 242

Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQSITKKV 292
             + L  GG L V+SFHSLEDR+VK+    ASR   V A   ++  +    +  S+ +  
Sbjct: 243 VLRVLAPGGRLAVISFHSLEDRMVKQCIAAASRPAAVHARLPILEKDMPQPILNSLGR-- 300

Query: 293 VVPTQEDVAFNRRSRSAKLRAGMRTVERSIED 324
           ++PT+++   N R+RSA LR   RT      D
Sbjct: 301 ILPTEQESKENVRARSAVLRVAERTSTPLPPD 332


>gi|308182803|ref|YP_003926930.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori PeCan4]
 gi|308064988|gb|ADO06880.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori PeCan4]
          Length = 308

 Score =  318 bits (815), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 110/304 (36%), Positives = 172/304 (56%), Gaps = 14/304 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H  VLL++V+    P    V++D T G GG+S++      +  +I +D+D FA    +E 
Sbjct: 8   HQSVLLQEVLQAFAPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFAQEIAKER 67

Query: 78  MRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++ ++ +++L    F++  ++ +      + GV+ DLGVSS+Q+D  +RGF+F  S  LD
Sbjct: 68  LKAFEGRYNLLSGGFAKRFKEALETHDKEIKGVLVDLGVSSLQLDDDNRGFNF-HSHALD 126

Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM   G ++A  V+N   +  L +I    GE ++  +IAH I +RR   PF+  +DLS 
Sbjct: 127 MRMDLEGDLNAQKVINSYPIVALEKIFKDYGEIREYKKIAHKIAERRAKKPFKDAKDLSD 186

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
            +      SKN +IHPAT  FQA+RI VN+E+EEL + L+ A      G +L V+SFHSL
Sbjct: 187 FLSS---LSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCARNL--KGAILCVISFHSL 241

Query: 254 EDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           ED LVK  F   +   +          + + A+   +TKK + P+ E++  NRRSRSAK+
Sbjct: 242 EDALVKNSFKDYAKNCVCDPLSFKCTCSNNHALGAILTKKPITPSPEEIKNNRRSRSAKM 301

Query: 312 RAGM 315
           R   
Sbjct: 302 RVFQ 305


>gi|328952338|ref|YP_004369672.1| Ribosomal RNA small subunit methyltransferase H [Desulfobacca
           acetoxidans DSM 11109]
 gi|328452662|gb|AEB08491.1| Ribosomal RNA small subunit methyltransferase H [Desulfobacca
           acetoxidans DSM 11109]
          Length = 303

 Score =  318 bits (815), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 105/310 (33%), Positives = 165/310 (53%), Gaps = 23/310 (7%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPFAVSCGQETMRD 80
           ++++V+A L   PG + +D T G GG++ +          V+ LD+D  A+      +  
Sbjct: 1   MVQEVLAELQCQPGHIYVDGTVGLGGHAEAILLRSSPTGQVVGLDQDSAALQIAALRLLP 60

Query: 81  YKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
           Y  +  L  + ++QL + +  +    VDG++ DLG+S+ Q+    RGFSF+   PLDMRM
Sbjct: 61  YGPRVYLIHSCYTQLAEILQQRRIESVDGILLDLGISTEQLKSSGRGFSFKGKEPLDMRM 120

Query: 138 SC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           +      +A+D++N      L+R+   LGEE+ A RIA  IV+ RQ AP  TT  L  +I
Sbjct: 121 NPDVQTTTAADLLNTEPEAQLSRMFWELGEERWARRIARNIVRARQQAPLITTNQLVEVI 180

Query: 196 QKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
            +++       RIHPATR FQALRI VN E+E+++  +  A K L  GG L+++ +HSLE
Sbjct: 181 LRSLPPKTGMKRIHPATRVFQALRIAVNQELEKISAFIPQAIKVLAPGGRLVIIDYHSLE 240

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           DR+VK+ F          R                KK ++P + +VA N  +RSAK+R  
Sbjct: 241 DRIVKRAFIEAERAGSVRRRY--------------KKPLIPGEAEVASNPSARSAKMRTV 286

Query: 315 MRTVERSIED 324
            +      ++
Sbjct: 287 EKLPASPDKN 296


>gi|108804337|ref|YP_644274.1| methyltransferase [Rubrobacter xylanophilus DSM 9941]
 gi|123069097|sp|Q1AVW6|RSMH_RUBXD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|108765580|gb|ABG04462.1| methyltransferase [Rubrobacter xylanophilus DSM 9941]
          Length = 312

 Score =  317 bits (814), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 120/319 (37%), Positives = 178/319 (55%), Gaps = 19/319 (5%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72
               H PV+LE+ +  L P+ G V++DATFG GG+S    +    G  V+ +DRDP A  
Sbjct: 2   AAAQHRPVMLEEAVRALAPSGGDVVVDATFGGGGHSARVLRELGPGGRVVGIDRDPEARG 61

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
             +  + D   +FS  Q  + ++   +  +G   D ++FDLG+SS Q+D   RGFS+ + 
Sbjct: 62  RAERLLGD--PRFSFEQGPYDEVLWRMVGRGERADALLFDLGLSSFQVDDPRRGFSYTRE 119

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEK--QASRIAHAIVKRRQSAPFQT 187
           GPLDMRM   SG SA+D +N A   ++  +L   G+    QA R+A  I++RR   P +T
Sbjct: 120 GPLDMRMDPGSGPSAADFLNAAGEAEIAGVLSEYGDVPRAQARRVAREILRRR---PLRT 176

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T DL   ++  V ++     +PA R FQA+RI VN+E+  L + L +AE+ L  GG L+V
Sbjct: 177 TADLREAVRAAVGWAPRGG-NPAKRVFQAVRIRVNDELGGLRRALEAAERLLVPGGRLVV 235

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVV-VPTQEDVAFNRR 305
           +SFHS EDRLVK+F A R G+        +       VF+   +  V  P++ +VA N R
Sbjct: 236 ISFHSGEDRLVKRFIAEREGRCTCPPELPVCVCGARPVFR---RGPVLRPSEREVAENPR 292

Query: 306 SRSAKLRAGMRTVERSIED 324
           S  A++R   RT E + E 
Sbjct: 293 SAPARMRVAFRTAEPAREA 311


>gi|86153556|ref|ZP_01071760.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|85843282|gb|EAQ60493.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp.
           jejuni HB93-13]
          Length = 310

 Score =  317 bits (814), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 101/302 (33%), Positives = 158/302 (52%), Gaps = 9/302 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76
            H+PVLL +V  +         LD T G GG+S +  K   ++  IA D+D  A+   ++
Sbjct: 4   PHIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKNHPDLKFIACDQDQQALEFSKK 63

Query: 77  TMRDYKEQFSLFQATFSQ-LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
            ++D+  + +  Q+ FS+ L+     + + G++ D+GVSS Q+D  +RGFS      LDM
Sbjct: 64  RLKDFHNRITFVQSNFSEVLEKISHKEELRGILADIGVSSFQLDNNERGFSVNSD-FLDM 122

Query: 136 RMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM+  S ISA +++N    + LT I    GE   A  IA  I   R   P ++ ++L  +
Sbjct: 123 RMNQNSKISAYEIINTYTKEQLTSIFKDYGELHDAHFIAEKICLERSKNPIKSAKELYQI 182

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           I K      + +I  AT +FQA+RI VN E++ L   L   E       +L ++SFHSLE
Sbjct: 183 IGK--GKQNHRKISKATLAFQAIRIEVNQELKVLKDFLGHLENLKPKNCILAIISFHSLE 240

Query: 255 DRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           DR+VK FF   S   +    +       + ++ Q ITKK +  ++E++  N RS  AK+R
Sbjct: 241 DRIVKIFFKKWSKNCICDEKIMRCECGNNHSLGQIITKKAISASKEELLKNSRSSCAKMR 300

Query: 313 AG 314
           A 
Sbjct: 301 AF 302


>gi|154174311|ref|YP_001408418.1| S-adenosyl-methyltransferase MraW [Campylobacter curvus 525.92]
 gi|263445746|sp|A7GYX6|RSMH_CAMC5 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|112802943|gb|EAU00287.1| S-adenosyl-methyltransferase MraW [Campylobacter curvus 525.92]
          Length = 308

 Score =  317 bits (814), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 95/305 (31%), Positives = 163/305 (53%), Gaps = 12/305 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQE 76
            H+ VLL++V+   +       +D T G GG+S +  +      +IA D+D  A+   ++
Sbjct: 4   PHISVLLDEVLDAFHGLS-GTFIDCTLGYGGHSGALLEQNKNLRLIACDKDDEAIEFSKK 62

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + ++ ++  ++++ FSQL   +       V G++ D+GVSS+Q+D  +RGFS      L
Sbjct: 63  RLENFGDRVKIYKSDFSQLIKVLSTDELKNVRGILADIGVSSLQLDKNERGFSINSD-TL 121

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  +   SA+DV+N  + ++L  I    GE   A  +A  IV  R      + ++L+
Sbjct: 122 DMRMDRACEFSAADVINSYSQQNLAEIFSKYGELSNAKALAAKIVSARNLKKITSAKELA 181

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           S+I       ++  + PA  +FQA+R+ VN+E+ EL + L S + A      + ++SFHS
Sbjct: 182 SIIGTGRVNGRS--VSPAILAFQAIRVEVNDELGELNRLLESIKSANLKECKVAIISFHS 239

Query: 253 LEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           LEDR+VK  F S +   +   +          A+ + +TKK +V +Q+++A N RS SAK
Sbjct: 240 LEDRIVKNTFKSWAQSCICPPNAMRCKCGNDHAIGKILTKKAIVASQKEIAANPRSSSAK 299

Query: 311 LRAGM 315
           +R   
Sbjct: 300 MRVFE 304


>gi|25028617|ref|NP_738671.1| S-adenosyl-methyltransferase MraW [Corynebacterium efficiens
           YS-314]
 gi|259507675|ref|ZP_05750575.1| S-adenosyl-methyltransferase MraW [Corynebacterium efficiens
           YS-314]
 gi|30173070|sp|Q8FNT2|RSMH_COREF RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|23493903|dbj|BAC18871.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
 gi|259164722|gb|EEW49276.1| S-adenosyl-methyltransferase MraW [Corynebacterium efficiens
           YS-314]
          Length = 338

 Score =  317 bits (814), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 107/320 (33%), Positives = 171/320 (53%), Gaps = 20/320 (6%)

Query: 20  HVPVLLEKVIALLNPA-----PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVS 72
           HVPV+ +++ AL+           VI+DAT GAGG++  F  +    +VI LDRD  A+ 
Sbjct: 12  HVPVMRDRMAALIADHVREMGDRAVIVDATLGAGGHAEHFLTVFPEAHVIGLDRDENALR 71

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVP-----------DKGVDGVVFDLGVSSMQIDCG 121
              E +  + ++F   +  F  L   +             +G+ G +FDLGVSSMQ+D  
Sbjct: 72  DAGERLARFGDRFLGVKTRFDGLSQVLATGEGDILDLARKEGISGALFDLGVSSMQLDQV 131

Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGF+++   PLDMRM  + GI+A+D++N  +  D+ R+L   G+E+ A +IA A++K R
Sbjct: 132 ERGFAYRTDAPLDMRMDPTQGITAADILNTYSHGDIARVLKTYGDERFAGKIASAVLKER 191

Query: 181 QSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
           +  PF T+  L  L+  T+  + +    HPA R+FQALR+ VN E+E L+  L     AL
Sbjct: 192 EKEPFTTSARLVELLYDTIPAATRRTGGHPAKRTFQALRVEVNRELESLSNVLPQITDAL 251

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
             GG  + +S+ S ED+LVK+FF   +         +        F+ +T+     ++ +
Sbjct: 252 NVGGRAVFMSYQSHEDKLVKRFFTELTTSKTPPGLPVDLPGTAPRFRQVTRGAETASEAE 311

Query: 300 VAFNRRSRSAKLRAGMRTVE 319
           +  N R+   K+RA  R  E
Sbjct: 312 IEENPRAAPVKVRAIERIAE 331


>gi|194476804|ref|YP_002048983.1| methyltransferase [Paulinella chromatophora]
 gi|171191811|gb|ACB42773.1| methyltransferase [Paulinella chromatophora]
          Length = 283

 Score =  317 bits (814), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 117/301 (38%), Positives = 166/301 (55%), Gaps = 28/301 (9%)

Query: 22  PVLLEKVIALLNPAPG-KVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQETM 78
           PVL  +V+      P   VILD T G GG+S         +  I LD+DP A     + +
Sbjct: 2   PVLASQVVQAFASLPPYGVILDCTVGGGGHSSLLLNNHPKLRIIGLDQDPDAWLKANQYL 61

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138
             ++ +  L +  F+   D+VP + + GV+ DLGVSS Q++   RGFSF+  GPLDMRM+
Sbjct: 62  ASFRYRTRLIKTNFA---DFVPVEPLSGVLVDLGVSSHQLEVAQRGFSFRFEGPLDMRMN 118

Query: 139 CS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK 197
            S G +A+++VN    K+L  ++   GE++ + RIA  IV++R   PF +T+DL+ +I  
Sbjct: 119 PSKGETAAELVNYLGEKELADLIFSYGEDRFSRRIARRIVQKR---PFNSTKDLAYVIAG 175

Query: 198 TV-YFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
                S+  RIHPATR+FQALRI VNNE+E L   L      L  GG++ ++SFHSLEDR
Sbjct: 176 CYSPKSRRGRIHPATRTFQALRIAVNNEMEVLDHLLSRIPDWLIPGGIVAIISFHSLEDR 235

Query: 257 LVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
            VK+ F +                     + IT K +V  + +   N RSRSAKLR   R
Sbjct: 236 RVKQAFLTDE-----------------RLERITNKPLVADENERNDNSRSRSAKLRIAKR 278

Query: 317 T 317
           T
Sbjct: 279 T 279


>gi|332670119|ref|YP_004453127.1| S-adenosyl-methyltransferase MraW [Cellulomonas fimi ATCC 484]
 gi|332339157|gb|AEE45740.1| S-adenosyl-methyltransferase MraW [Cellulomonas fimi ATCC 484]
          Length = 337

 Score =  317 bits (814), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 115/323 (35%), Positives = 187/323 (57%), Gaps = 12/323 (3%)

Query: 20  HVPVLLEKVIALLNPAP---GKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCG 74
           H PVLL++ + LL PA    G V++D+T G GG++    +   +V  + +DRDP A++  
Sbjct: 13  HTPVLLQRCLDLLAPALAADGSVMVDSTLGMGGHTEGVLRAFPHVRVVGIDRDPQALALA 72

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSG 131
              +  + ++F+   A + ++ + +   G+D   GV+ DLGVSS+Q+D  +RGFS+    
Sbjct: 73  GRRLAPFGDRFTGVHAVYDEIGEVLDGLGIDHVQGVLMDLGVSSLQLDERERGFSYAHDA 132

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  S G +A+DVVN  + +DL R+L + GEE+ A+RIA ++V+ R+ AP   T +
Sbjct: 133 PLDMRMDASRGQTAADVVNGYDERDLARVLRVYGEERFAARIARSVVRAREKAPLTRTGE 192

Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  L++ ++  + +    HPA R+FQALRI VN E+E L + L ++ +AL  GG ++V +
Sbjct: 193 LVDLVRASIPAATRKTGGHPAKRTFQALRIEVNGELEVLERALPASVEALAVGGRIVVEA 252

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           +HSLEDRLVK+  A+ +         +    H    + +T+      + ++A N R++S 
Sbjct: 253 YHSLEDRLVKRTLAAGATSSAPPDLPVEPETHAPYLRLVTRGAEEADEAELARNPRAQSV 312

Query: 310 KLRAGMRTVERSIEDDSFVHLPR 332
           +LRA  R   R   D      P 
Sbjct: 313 RLRAAERI--RPTPDHLRGPQPG 333


>gi|296081823|emb|CBI20828.3| unnamed protein product [Vitis vinifera]
          Length = 324

 Score =  317 bits (813), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 110/328 (33%), Positives = 168/328 (51%), Gaps = 38/328 (11%)

Query: 17  IGDHVPVLLEKVIA-------LLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDR 66
              HVPV+L +V+          + +P +  +D T GA G+S +  +    +   + +D 
Sbjct: 6   TATHVPVMLGEVLEVFSSFSSSSSSSPLRSFVDCTLGAAGHSSAIIQAHPELELYVGMDV 65

Query: 67  DPFAVSCGQETMRD------------YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
           DP A    Q  +R             +   F   ++   ++ + +   GVDG++ DLG+S
Sbjct: 66  DPIAHEKAQARIRSLCGDSSHLKAHTFMRNFKNIKSVLREVDEELLSSGVDGILMDLGMS 125

Query: 115 SMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIA 173
           SMQ++  +RGFS   +GPLDMRM     ++A D++N     ++ RIL   GEE     + 
Sbjct: 126 SMQVNNAERGFSVLANGPLDMRMDPQASLTAEDILNSWPDTEVGRILREYGEESNWRSLQ 185

Query: 174 HAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNR---IHPATRSFQALRIFVNNEIEELAQ 230
           + IVK R      +T +L  LI+KT   ++  R   I  ATR FQALRI VN+E++ L  
Sbjct: 186 NKIVKARLFGGLHSTGELVDLIRKTTPRTRGGRQGWIKTATRVFQALRIAVNDELKTLED 245

Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF--QSI 288
            L +  + L  GG L V+SFHSLEDR+VK+ F            +I SN     +    +
Sbjct: 246 SLYACFECLTPGGRLAVISFHSLEDRIVKQTF----------LDIINSNGEDERWNGTIL 295

Query: 289 TKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           TK+ + P++E+   NRRSRSAKLR   +
Sbjct: 296 TKRPITPSEEEERLNRRSRSAKLRVIQK 323


>gi|15611713|ref|NP_223364.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori J99]
 gi|8134818|sp|Q9ZLD4|RSMH_HELPJ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|4155209|gb|AAD06233.1| putative [Helicobacter pylori J99]
          Length = 308

 Score =  317 bits (813), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 110/311 (35%), Positives = 174/311 (55%), Gaps = 14/311 (4%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70
           +      H  VLL++V+    P    +++D T G GG+S++      +  +I +D+D FA
Sbjct: 1   MQEIENLHQSVLLQEVLQAFTPLEEGILIDCTLGLGGHSKAILSQKPHLKLIGIDKDKFA 60

Query: 71  VSCGQETMRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSF 127
               +E +++++ +++L    F++  ++ +   G  + GV+ DLGVSS+Q+D  +RGF+F
Sbjct: 61  QEIAKERLKEFEGRYNLLSGGFAKRFKEALEIHGERIKGVLVDLGVSSLQLDDDNRGFNF 120

Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           +    LDMRM   S ++A  V+N   V  L +I    GE K+  +IAH I +RR   PF+
Sbjct: 121 RS-HALDMRMDLESELNAQKVINSYPVVALEKIFRDYGEIKEYKKIAHKIAERRAKKPFK 179

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
             +DLS  +      SKN +IHPAT  FQA+RI VN+E+EEL + L+ A        +L 
Sbjct: 180 DAKDLSEFLSS---LSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCARNL--KEAILC 234

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           V+SFHSLED LVK  F   +   +          + + A+   +TKK + P+ E++  NR
Sbjct: 235 VISFHSLEDALVKNAFKDYAKNCICDPSSFKCACSNNHALGAILTKKPITPSPEEIKNNR 294

Query: 305 RSRSAKLRAGM 315
           RSRSAK+R   
Sbjct: 295 RSRSAKMRVFQ 305


>gi|294506454|ref|YP_003570512.1| S-adenosyl-methyltransferase mraW [Salinibacter ruber M8]
 gi|294342782|emb|CBH23560.1| S-adenosyl-methyltransferase mraW [Salinibacter ruber M8]
          Length = 336

 Score =  317 bits (813), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 112/323 (34%), Positives = 171/323 (52%), Gaps = 20/323 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H PVL   V A L        +DAT G GG++R+   +      V+ +DRDP A+   ++
Sbjct: 24  HAPVLSHDVQARLVTDASGRYVDATLGGGGHARALLDVLDPDGVVLGIDRDPEALETARD 83

Query: 77  TMRDYKE--QFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            + D +E  +F     TF  L+D +  +    +DG++ DLGVSS QID  +RGFSF+  G
Sbjct: 84  RLADEREAGRFWAVHGTFGNLRDVLAAEDLIPIDGLLLDLGVSSHQIDVPERGFSFRDEG 143

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM    G++A  +VN    +DL  +L   GEE +A +IA A+   R   P  TT+ 
Sbjct: 144 PLDMRMDPQRGLTAQQIVNGWGERDLRDVLREYGEESRAGQIARALCDAR---PLDTTRA 200

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ +++  V     + +   TR FQALRI VN E++EL Q L  A + ++ GG +  +S+
Sbjct: 201 LAEVVEDCVPPP--DTVKTLTRVFQALRIAVNAELDELEQALEQATEVVRTGGRIAAISY 258

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDR VK++    + +    R +  +   P  +    +  +   + +V  N R+RSA 
Sbjct: 259 HSLEDRRVKRYLRYGNFEGEPRRDLYGTLVAP--WAETPRGPIEAGESEVEANPRARSAH 316

Query: 311 LRAGMRTVERSIEDDSFVHLPRL 333
           LR   R      +D++   LP L
Sbjct: 317 LRVAER----RDDDEAGAPLPPL 335


>gi|319957176|ref|YP_004168439.1| s-adenosyl-methyltransferase mraw [Nitratifractor salsuginis DSM
           16511]
 gi|319419580|gb|ADV46690.1| S-adenosyl-methyltransferase MraW [Nitratifractor salsuginis DSM
           16511]
          Length = 319

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 107/312 (34%), Positives = 172/312 (55%), Gaps = 11/312 (3%)

Query: 9   MSSAIHHTI--GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IAL 64
           MS+    T     H+PVLL +V+   +     V++D T G  G+S +  +    +  I +
Sbjct: 1   MSTHSSKTSLQTPHIPVLLPEVMESFSSLDEGVLIDCTLGYAGHSSALLEAHPKLKLIGI 60

Query: 65  DRDPFAVSCGQETMRDYKEQFSLFQATFSQ-LQDYVPDKGVDGVVFDLGVSSMQIDCGDR 123
           DRDP A+    + +  Y+++  L   +FS+ L   +  + V G++ D GVSS+Q+D  +R
Sbjct: 61  DRDPEALEFSAQRLAPYRDRVRLEHGSFSERLPSLIDQEPVVGILADFGVSSLQLDKKER 120

Query: 124 GFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           GFSF     LDMRM+    + A DVVN   ++ L  +    GE + A  +A AIVK R +
Sbjct: 121 GFSFASEN-LDMRMNPEAPLRAYDVVNGYPLERLEYLFREYGEIRPAGALAAAIVKARAN 179

Query: 183 APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           AP  + Q+L+ L +  +      + HPAT+ FQA+RI VN+E+ E+ + L + E    AG
Sbjct: 180 APISSAQELAELAKTVLRGK--GKTHPATQMFQAIRIEVNDELGEIERLLDTLEAKRPAG 237

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDV 300
            ++ +++FHSLEDRLVK  F + S K +            + A+ + +++K    ++E++
Sbjct: 238 AIVSLITFHSLEDRLVKNRFRAWSQKCICPPEAIRCTCGGNHALGEMLSRKPRSASKEEL 297

Query: 301 AFNRRSRSAKLR 312
             N RSRSAKLR
Sbjct: 298 RSNPRSRSAKLR 309


>gi|227503272|ref|ZP_03933321.1| S-adenosyl-methyltransferase MraW [Corynebacterium accolens ATCC
           49725]
 gi|227075775|gb|EEI13738.1| S-adenosyl-methyltransferase MraW [Corynebacterium accolens ATCC
           49725]
          Length = 346

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 112/317 (35%), Positives = 164/317 (51%), Gaps = 20/317 (6%)

Query: 20  HVPVLLEKVIALLNPA-----PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVS 72
           HVPV+ E++  LL P         V++DAT GAGG+S  F +      VI +DRD  A+ 
Sbjct: 16  HVPVMRERMAELLRPGVEAAGSQAVLVDATLGAGGHSEYFLQTFPQARVIGVDRDEQALQ 75

Query: 73  CGQETMRDYKEQFSLFQATFSQLQ-----------DYVPDKGVDGVVFDLGVSSMQIDCG 121
                +  +  +F    A F +L            D     G+ G +FDLGVSSMQ+D  
Sbjct: 76  NASARLEPFSPRFCAVNARFDELGTAIAQGEGDIFDAARAHGIAGALFDLGVSSMQLDQA 135

Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGF+++   PLDMRM  S G++A+DV+N  +  DL RIL   G+E+ A +IA A++K R
Sbjct: 136 ERGFAYKTDAPLDMRMDPSHGLTAADVLNTYSHGDLARILKTYGDERFAGKIASAVLKER 195

Query: 181 QSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
           +  PF T+  L  L+  T+  + +    HPA R+FQALR+ VN E+E +   L     AL
Sbjct: 196 EKEPFSTSGRLVELLYSTIPAATRRTGGHPAKRTFQALRVEVNRELEAIENVLPVITSAL 255

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
             G   + +S+ SLEDRLVK  F   S         +        F ++T+     +  +
Sbjct: 256 SIGARAVFMSYQSLEDRLVKAAFKDLSTSTTPAGLPMDLPGTAPEFATVTRGAEKASAAE 315

Query: 300 VAFNRRSRSAKLRAGMR 316
           V  N R+ S ++RA  R
Sbjct: 316 VEENSRAASVRVRALER 332


>gi|300933362|ref|ZP_07148618.1| S-adenosyl-methyltransferase MraW [Corynebacterium resistens DSM
           45100]
          Length = 348

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 108/334 (32%), Positives = 177/334 (52%), Gaps = 24/334 (7%)

Query: 11  SAIHHTIGDHVPVLLEKVIALLNP------APG-KVILDATFGAGGYSRSFCKMGSN--V 61
            A  +    HVPV+ ++++ L+        AP   VI+D T GAGG+S +F    S+  V
Sbjct: 8   DATENATHGHVPVMCDRMVELVGVGVTSDNAPSVPVIIDGTLGAGGHSEAFLSSFSDAIV 67

Query: 62  IALDRDPFAVSCGQETMRDYKEQFSLFQATFS-------------QLQDYVPDKGVDGVV 108
           I LDRDP A+    E +  + ++F  ++  F              ++   V + G+  + 
Sbjct: 68  IGLDRDPHALEEATERLAPFGDRFVPYRTRFDGITEAIEDLIALDRIPAEVRETGLSALF 127

Query: 109 FDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEK 167
           FDLGVSSMQ+D  +RGF+++   PLDMRM     ++A++++N  +  DL RIL   G+E+
Sbjct: 128 FDLGVSSMQLDQAERGFAYRVDAPLDMRMDPRLSLTAAEILNTYSHGDLARILKTYGDER 187

Query: 168 QASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIE 226
            A +IA A+++ R+  PF T+  L  L+  T+  + +    HPA R+FQALRI VN E+E
Sbjct: 188 FAGKIASAVLREREKEPFTTSARLVELLYATIPAATRRTGGHPAKRTFQALRIEVNAELE 247

Query: 227 ELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ 286
            L   L  A      GG+ + +S+ SLED++VK  F+  +         +        F+
Sbjct: 248 ALENVLPLAASWTHVGGVNVYMSYQSLEDKIVKSAFSDLTTSQTPAGLPMELPGTEPEFE 307

Query: 287 SITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVER 320
            IT++    T++++  N R+   ++RA  R  +R
Sbjct: 308 MITRRAEKATEKEIEENSRAAPVRVRAARRVSDR 341


>gi|326382552|ref|ZP_08204243.1| S-adenosyl-methyltransferase MraW [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326198671|gb|EGD55854.1| S-adenosyl-methyltransferase MraW [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 339

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 114/325 (35%), Positives = 173/325 (53%), Gaps = 16/325 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKM--G 58
           M+S      G HVPV+ +++ ALL PA         G V++D T GAGG++  F     G
Sbjct: 1   MNSPQQGDHG-HVPVMADRMFALLEPALTRVSADGTGAVLVDGTLGAGGHTEYFLDRLDG 59

Query: 59  SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSS 115
             VIA+DRD  A+    E +  + ++       + +++D V   G   VDGV+ DLGVSS
Sbjct: 60  LYVIAIDRDTSAIGIASERLGRFGDRVEFHHNRYDEIEDVVHAAGRTVVDGVLLDLGVSS 119

Query: 116 MQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAH 174
           MQ+D  +RGF++    PLDMRM+    ++A+D++N  +   L R+L   GEE+ A +IA 
Sbjct: 120 MQLDRAERGFAYAVDAPLDMRMNADDELTAADILNTYDHGALARVLSEYGEERFAGKIAS 179

Query: 175 AIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLR 233
           A+V+ R   PF T+  L  L+  T+  + +    HPA R+FQALRI VN+E++ L   + 
Sbjct: 180 AVVRERAKEPFTTSGRLVELLYATIPAATRRTGGHPAKRTFQALRIEVNHELDSLRGVIP 239

Query: 234 SAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV 293
           ++ + L  GG L V+S+ SLEDR+VK+ FA            +        F  +T+   
Sbjct: 240 ASLEVLGIGGRLAVMSYQSLEDRIVKRDFARAVENTTPAGLPVDLPGTAPEFSLVTRGAE 299

Query: 294 VPTQEDVAFNRRSRSAKLRAGMRTV 318
                + A N RS   ++RA  R  
Sbjct: 300 QADAAERAANPRSAPVRIRAIERIA 324


>gi|315586621|gb|ADU41002.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori 35A]
          Length = 308

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 110/311 (35%), Positives = 173/311 (55%), Gaps = 14/311 (4%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFA 70
           +      H  +LL++V+    P    V++D T G GG+S++      ++  I +D+D FA
Sbjct: 1   MQEIENLHQSILLQEVLQAFAPLEEGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFA 60

Query: 71  VSCGQETMRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSF 127
               +E ++ ++ +++L    F++  ++ +      + GV+ DLGVSS+Q+D  +RGF+F
Sbjct: 61  QEIAKERLKAFEGRYNLLSGGFAKRFKEALETHDKEIKGVLVDLGVSSLQLDDDNRGFNF 120

Query: 128 QKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
             S  LDMRM   G ++A  V+N   +  L +I    GE K+  +IAH I +RR   PF+
Sbjct: 121 -HSHALDMRMDLEGDLNAQKVINSYPMVALEKIFKDYGEIKEYKKIAHKIAERRTKKPFK 179

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
             +DLS  +      SKN +IHPAT  FQA+RI VN E+EEL + L+ A      G +L 
Sbjct: 180 DAKDLSDFLSS---LSKNKKIHPATLVFQAVRIEVNRELEELKEFLQCARNL--KGAILC 234

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           V+SFHSLED LVK  F   +   +          + + A+ + +TKK + P+ E++  NR
Sbjct: 235 VISFHSLEDSLVKNAFKDYAKNCICDPLSFKCACSNNHALGEILTKKPITPSPEEIKNNR 294

Query: 305 RSRSAKLRAGM 315
           RSRSAK+R   
Sbjct: 295 RSRSAKMRVFQ 305


>gi|297626718|ref|YP_003688481.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296922483|emb|CBL57056.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 342

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 110/320 (34%), Positives = 167/320 (52%), Gaps = 11/320 (3%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIAL 64
            +        HVPV+  +V+ LL+PA   PG V +D T G  G++           ++ +
Sbjct: 4   EATGPDPSTIHVPVMAARVVELLSPALDHPGAVYVDGTLGMAGHAELMLTANPQARLVGI 63

Query: 65  DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCG 121
           DRD  A+      +  +  +  L +A F +L   + D G+   D  +FDLG+SS+QID  
Sbjct: 64  DRDHDALDLASRRLAPFGARVHLARARFDELGRVLDDAGIATIDAALFDLGLSSLQIDRA 123

Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           DRGF+++   PLDMRM   S ++A+ V+N+ +  DL R+L   GEEKQA+RI  AIV  R
Sbjct: 124 DRGFAYRVDAPLDMRMDTRSELTAARVLNEYSPGDLVRVLRDYGEEKQATRIVRAIVAER 183

Query: 181 QSAPFQTTQDLSSLIQKTVYFSKNNRIH--PATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           +  PF  +  L  LI + +  +   +    PA R+FQALRI VN E+E L+  L      
Sbjct: 184 EREPFTDSARLVDLILRAIPAAVRTKTKGNPAKRTFQALRIEVNGELEALSTVLPVMLGR 243

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           +       V+++HSLEDR+VK+ F + +         +  +   A F  +T+    P   
Sbjct: 244 MGPAARAAVLAYHSLEDRIVKQVFTAATSDSAPAGLPVVPDEMAARFAPLTRGAEKPDAA 303

Query: 299 DVAFNRRSRSAKLRAGMRTV 318
           ++A N RS SA+LRA  R  
Sbjct: 304 EIAENPRSASARLRAIERIR 323


>gi|195055510|ref|XP_001994660.1| GH14890 [Drosophila grimshawi]
 gi|193892423|gb|EDV91289.1| GH14890 [Drosophila grimshawi]
          Length = 368

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 124/332 (37%), Positives = 175/332 (52%), Gaps = 31/332 (9%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCG 74
              HVPVL +  I  L P P    +D TFGAGG++R          V ALDRDP A    
Sbjct: 36  AAPHVPVLCQTAIEYLEPRPKGKYIDMTFGAGGHTRRLLDSCPEATVYALDRDPIAYELA 95

Query: 75  QETMRD--YKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSF 127
           Q   ++  Y  +       FS L   + D+ V     DG++FD G SSMQ D   RGFS 
Sbjct: 96  QRLSQESAYAGRLVPLLGKFSDLPQLLTDRNVPRHSFDGILFDFGCSSMQFDEAARGFSI 155

Query: 128 QKSGPLDMRMSCS---GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR-QSA 183
             +GPLDMRM C    G+SA+DV+ +    DL RIL + GEEK A +IA AIV+ R    
Sbjct: 156 AHNGPLDMRMDCGRSGGVSAADVLARIEEADLARILRVYGEEKAAKKIARAIVEARGALQ 215

Query: 184 PFQTTQDLSSLIQKTVYFSKNNRI-----HPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
             +TT+ L+ L+   +   +         H AT++FQALRIFVNNE+ E+  G+  A++ 
Sbjct: 216 RIETTRQLAELVASVLGDGQRQDKLQRPAHLATKTFQALRIFVNNELNEINYGMLLAQEY 275

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-------------PAVF 285
           L+A G L+ ++FHSLED +VK+       + +A    +    H              + +
Sbjct: 276 LRAQGRLVAITFHSLEDTIVKRHINGNVIEGVANPLPLKYCGHDITHDPALLESFVQSNW 335

Query: 286 QSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           Q + + V++P   ++A N RSRSAKLRA ++ 
Sbjct: 336 QQLHRHVILPDATEIASNSRSRSAKLRAAIKI 367


>gi|254456040|ref|ZP_05069469.1| S-adenosyl-methyltransferase MraW [Candidatus Pelagibacter sp.
           HTCC7211]
 gi|207083042|gb|EDZ60468.1| S-adenosyl-methyltransferase MraW [Candidatus Pelagibacter sp.
           HTCC7211]
          Length = 336

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 119/310 (38%), Positives = 180/310 (58%), Gaps = 4/310 (1%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRD 67
           M + I   +  H PVLL+++I++ +P  G   +D TFG GGYS+       +++IALDRD
Sbjct: 1   MEATIVSELQKHYPVLLKEIISVFSPQHGGTFIDCTFGQGGYSKKILDFENTSIIALDRD 60

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDY-VPDKGVDGVVFDLGVSSMQIDCGDRGFS 126
             +     +   +++++F      FSQL +  + ++ + GV+FDLG S  QI    +G S
Sbjct: 61  VESEKIANKFKENFEDRFIFKNIKFSQLNNLKLKNENIRGVIFDLGYSYTQIKDPLKGLS 120

Query: 127 FQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           F+  G L+M++  +  SA D +N+ + K+L +I    G+EK+   IA  I+K R      
Sbjct: 121 FEADGKLNMQLGLNSYSAEDAINKLDEKELEKIFKFFGDEKEGKYIARNIIKERLKNKID 180

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
            T+ L  +I K+    KN ++H AT+ FQALRIFVN EI EL  GL +A K LK GG+L 
Sbjct: 181 -TRALVEIIDKS-KKRKNFKVHNATKVFQALRIFVNKEISELIYGLINATKVLKKGGILG 238

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           VV+FHSLED++VK FF S S      R+   +     +F  I KK ++P+ E+V+ N  S
Sbjct: 239 VVTFHSLEDKIVKYFFKSLSENKSISRYSPVTEQSETLFNLIQKKPILPSDEEVSENPPS 298

Query: 307 RSAKLRAGMR 316
           RSAK R  ++
Sbjct: 299 RSAKFRYVIK 308


>gi|54114491|gb|AAV29879.1| NT02FT1003 [synthetic construct]
          Length = 305

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 116/309 (37%), Positives = 175/309 (56%), Gaps = 16/309 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76
            H  VLL + I  LN  P  + + ATFG GG+S++         +IA D+D  A+S  +E
Sbjct: 1   MHYSVLLPESINDLNINPQGIYIHATFGRGGHSKAILNRLTTGRLIAFDKDLDAISYARE 60

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             +     F +  A+F+ + DY         +DG++ DLGVSS Q+D   RGFSF  +GP
Sbjct: 61  NFQF--SNFEIVHASFASIYDYCLQHSLLGKIDGIIMDLGVSSPQLDNAARGFSFTHNGP 118

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTTQD 190
           LDMRM  S GI+AS  + + +V DL+ I  + GEE+ A +IA  I    +Q+   + T +
Sbjct: 119 LDMRMDVSKGITASQALEELSVDDLSYIFKVYGEERFAKKIALRIKDYIQQNGSIRKTLE 178

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ LI  T+   K  + +PATR FQALRI+VNNE+++L   L +    +K+GG +  +SF
Sbjct: 179 LAELILATI--GKKEKKNPATRCFQALRIYVNNELKDLEALLENILAVIKSGGRIAAISF 236

Query: 251 HSLEDRLVKKFFASRSGKVMAVRH---MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           HSLEDR+VK+ F++       +     M+P ++     + ITKK     ++++  N RSR
Sbjct: 237 HSLEDRIVKQKFSALINPKQELNRITKMLPQDSSQIKLKWITKKS-KANEDELNQNVRSR 295

Query: 308 SAKLRAGMR 316
           SA LR   +
Sbjct: 296 SAILRVVEK 304


>gi|308184491|ref|YP_003928624.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori SJM180]
 gi|308060411|gb|ADO02307.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori SJM180]
          Length = 308

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 112/311 (36%), Positives = 174/311 (55%), Gaps = 14/311 (4%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70
           +      H  VLL++V+    P    V++D T G GG+S++      +  +I +D+D FA
Sbjct: 1   MQEIENLHQSVLLQEVLQAFAPLEKGVLIDCTLGLGGHSKALLSQKPHLKLIGIDKDKFA 60

Query: 71  VSCGQETMRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSF 127
               +E +++++ +++L    F++  ++ +   G  + GV+ DLGVSS+Q+D  +RGF+F
Sbjct: 61  QEIAKERLKEFEGRYNLLSGGFAKRFKEALEIHGERIKGVLVDLGVSSLQLDDDNRGFNF 120

Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
             S  LDMRM   S ++A  V+N   V  L +I    GE K+  +IAH I +R    PF+
Sbjct: 121 -HSHALDMRMDLESELNAQKVINSYPVVALEKIFRDYGEIKEYKKIAHKIAERCAKKPFK 179

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
             +DLS  +      SKN +IHPAT  FQA+RI VN+E+EEL + L+ A      G +L 
Sbjct: 180 DAKDLSEFLSS---LSKNKKIHPATLVFQAVRIEVNSELEELKEFLQCARNL--KGAILC 234

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVR--HMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           V+SFHSLED LVK  F   +   +          + + A+   +TKK + P+ E++  NR
Sbjct: 235 VISFHSLEDALVKNAFKDYAKNCICDPSSFKCACSNNHALGAILTKKPITPSPEEIKNNR 294

Query: 305 RSRSAKLRAGM 315
           RSRSAK+R   
Sbjct: 295 RSRSAKMRVFQ 305


>gi|78776996|ref|YP_393311.1| S-adenosyl-methyltransferase MraW [Sulfurimonas denitrificans DSM
           1251]
 gi|123550493|sp|Q30SF5|RSMH_SULDN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|78497536|gb|ABB44076.1| methyltransferase [Sulfurimonas denitrificans DSM 1251]
          Length = 307

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 96/306 (31%), Positives = 161/306 (52%), Gaps = 15/306 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76
            HVPVL  +V+         +++D T G GG++        N  +IA+D+D  A+    +
Sbjct: 5   PHVPVLYREVLEQFKNIKNGIVIDCTMGYGGHTSLILDANPNIKLIAIDQDQSAIDFSTK 64

Query: 77  TMRDYKEQFSLFQATFS-QLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            +  Y ++  + +  FS  +++ + +  +    G++ D+GVSS+Q+D  +RGFSF  S  
Sbjct: 65  RLEPYGDRVVIKKGRFSTIIKEILKEYDISDIRGILADIGVSSLQLDKKERGFSF-FSEN 123

Query: 133 LDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM     ++A+ V+N+ +  +L R+L   GE +   +IA  IV  R   PF + ++L
Sbjct: 124 LDMRMDEDAPLNANIVINEYSSHELQRVLLEYGELRNYKQIASFIVSNR---PFYSAKEL 180

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           S  ++  +   K  +IHPAT   QA+RI VNNE+ EL   L + ++       + ++SFH
Sbjct: 181 SDALRHLMPSGK--KIHPATLLMQAIRIEVNNELGELESLLDTIQERKFLDTKVAIISFH 238

Query: 252 SLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           SLEDR+VK  F       +  +           ++   +TKK ++   +++  N RSRSA
Sbjct: 239 SLEDRIVKNRFNEWRASCICPQEAMRCTCTNDNSLGNILTKKPIIAQMDEIQANPRSRSA 298

Query: 310 KLRAGM 315
           KLR   
Sbjct: 299 KLRVFE 304


>gi|71891921|ref|YP_277651.1| S-adenosyl-dependent methyl transferase [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
 gi|88909187|sp|Q493Q9|RSMH_BLOPB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|71796027|gb|AAZ40778.1| S-adenosyl-dependent methyl transferase [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
          Length = 329

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 111/321 (34%), Positives = 183/321 (57%), Gaps = 19/321 (5%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69
           + +    H  VLL + I  LN     + +D TFG+GG+S+           ++A+D+D  
Sbjct: 12  MFYIHYSHKSVLLNEAIQSLNIKATGMYIDGTFGSGGHSKLILSQLNKRGRLLAIDKDLL 71

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGF 125
           AV  G + + +  ++F++  ++FS++ ++V + G    VDG++ DLG+S+ QI+   RGF
Sbjct: 72  AVKIG-KHIAEQDDRFTIIHSSFSKMINHVKNIGLIGSVDGILLDLGISTFQINDCSRGF 130

Query: 126 SFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF + G LDMRM   SGISA++ +++A+ +++T +L   GEE+ A  IA  +V +R+  P
Sbjct: 131 SFMQDGLLDMRMDISSGISAAEWLSKASQENITWVLKNFGEERFAKNIAKILVSKRRYTP 190

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
              +  LS LI   +   +N   HPAT+SF A+R+F+NNE+EE+ Q L+ A   L   G 
Sbjct: 191 IIRSIVLSKLICDAIP-HRNMNKHPATKSFLAIRMFINNELEEIMQVLKDALIILSPRGR 249

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-------PAVFQSITKKVVVPTQ 297
           L+V+SF+SLEDRLVK F    S  +     +  +N             ++I K  + P++
Sbjct: 250 LVVISFNSLEDRLVKYFIREHSCALSIPPKLPLTNNQIFSKYKNKCQLKNIGK--LTPSK 307

Query: 298 EDVAFNRRSRSAKLRAGMRTV 318
           +++  N R+RSA LR   +  
Sbjct: 308 QEIKRNIRARSAILRCAEKLA 328


>gi|33519608|ref|NP_878440.1| S-adenosyl-methyltransferase MraW [Candidatus Blochmannia
           floridanus]
 gi|42559456|sp|Q7VQJ5|RSMH_BLOFL RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|33517271|emb|CAD83655.1| S-adenosyl methionine adenyltransferase; probably methyltransferase
           [Candidatus Blochmannia floridanus]
          Length = 321

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 121/321 (37%), Positives = 176/321 (54%), Gaps = 23/321 (7%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73
           I  H  VLL + I  LN  P  + +D TFG GG+S            +IA+DRD  AV+ 
Sbjct: 3   IMHHNSVLLHEAINALNINPSGIYIDGTFGLGGHSHYILSKLTSHGRLIAMDRDWSAVNI 62

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQK 129
           G E +     +FS+  A FS++   + +      ++G++ DLGV   Q+    RGFSF +
Sbjct: 63  G-EVLTKQDGRFSIIHAPFSKMLRCIYNMNLVGLINGILLDLGVCESQLTDSSRGFSFMR 121

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM  S G SA + + +A+ KD+  +L   GEEK + +IA +IV +R+  P   T
Sbjct: 122 DGPLDMRMDNSVGQSAYEWIAKASQKDIEWVLRTFGEEKLSKKIARSIVLKREVYPIDRT 181

Query: 189 QDLSSLIQKTVYF---SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
             LS +I  TV +     N R HPATRSF A+RI++N E+ E+ + L+   K L  GG L
Sbjct: 182 SALSEIISDTVLYYNNRYNRRKHPATRSFLAIRIYINEELVEIMKILQDVFKLLAPGGRL 241

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV--------FQSITKKVVVPTQ 297
           +V+SF+SLEDR+VKKF    S +V A    IP      +        F+++ K  + PT 
Sbjct: 242 VVISFNSLEDRIVKKFINQYS-RVFAYPPKIPLTHTQLLHKYSGTMKFKNLGK--IKPTV 298

Query: 298 EDVAFNRRSRSAKLRAGMRTV 318
            ++  N R+RSA LR   + +
Sbjct: 299 LEIKKNIRARSAILRYAEKLI 319


>gi|217967641|ref|YP_002353147.1| S-adenosyl-methyltransferase MraW [Dictyoglomus turgidum DSM 6724]
 gi|263446377|sp|B8E088|RSMH_DICTD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|217336740|gb|ACK42533.1| S-adenosyl-methyltransferase MraW [Dictyoglomus turgidum DSM 6724]
          Length = 295

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 108/305 (35%), Positives = 173/305 (56%), Gaps = 27/305 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H PV+L++VI  L  +PGK+++DAT G GG+S    +       +I +DRD   ++  +E
Sbjct: 8   HKPVMLKEVIHYLKLSPGKIVVDATLGLGGHSSEILRELKGEGLLIGIDRDEEVLNLARE 67

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK-SGP 132
            +R     F LF  T+ ++Q+ + +     +D ++FDLG SS  I+  +RGFSF +   P
Sbjct: 68  RLRKIANNFVLFNTTYDKVQEILKELKLSFIDAILFDLGFSSFHIEKSERGFSFMRPEEP 127

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMR S  + ++A+D++N  N  +L+ +    GEE  + ++A  IV+RR+   F   +DL
Sbjct: 128 LDMRYSKDTTLTAADILNSFNELELSNLFWEYGEEPLSRKLAKKIVERRKEKKFVYVKDL 187

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             ++++ +   K    H AT+ FQALRI VN+E+  L + L      L   G ++V+++H
Sbjct: 188 LEVVEEVIPKRKR---HEATKVFQALRIVVNDEVNILKRALDQIPFILAPRGRIVVLTYH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           S+EDR+VK FF S S K+                  + KKV+ P+  ++  NRR+RSAKL
Sbjct: 245 SIEDRVVKNFFKSHSDKIFP----------------VNKKVIRPSVNEIRENRRARSAKL 288

Query: 312 RAGMR 316
           R G R
Sbjct: 289 RVGER 293


>gi|296454440|ref|YP_003661583.1| S-adenosyl-methyltransferase MraW [Bifidobacterium longum subsp.
           longum JDM301]
 gi|296183871|gb|ADH00753.1| S-adenosyl-methyltransferase MraW [Bifidobacterium longum subsp.
           longum JDM301]
          Length = 359

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 114/307 (37%), Positives = 160/307 (52%), Gaps = 11/307 (3%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           H+PVLL+  + L+ PA      +  D T G  G+S +F K      +I +DRD  A+   
Sbjct: 8   HLPVLLDDCVNLMVPALEHENAIAADCTLGLAGHSIAFLKAAPQARLIGIDRDSEALGLA 67

Query: 75  QETMRDYK--EQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK 129
            E M      ++F    A F QL   + D+G   VD V  DLG+SS+QID  DRGFS+  
Sbjct: 68  TERMEREGLADRFIPVHAAFDQLDQVLTDRGIERVDAVFMDLGLSSLQIDETDRGFSYSH 127

Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM  S  ++A  ++   +  +L RI    GEE+ + +IA AIV RR   PF TT
Sbjct: 128 DAPLDMRMDVSQPLTAERILATYDAAELVRIFKEYGEERFSRQIARAIVARRDKEPFTTT 187

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ L+ + V  +     +PA R FQALRI VN E+++LA  L  A   L  GG L+V 
Sbjct: 188 AQLNRLVDEVVPQAHRPAGNPAKRVFQALRIEVNGELDKLASTLPQAANRLHVGGRLVVE 247

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           S+HSLED+ VK F A      +     +        F  +T+  +   + ++A N RS S
Sbjct: 248 SYHSLEDKTVKSFMAQGLRVDVPAGLPVIPPDAQPFFTDLTRGAIKAGEHEIAANPRSAS 307

Query: 309 AKLRAGM 315
            +LRA  
Sbjct: 308 VRLRAVE 314


>gi|183983192|ref|YP_001851483.1| methyltransferase [Mycobacterium marinum M]
 gi|262825131|sp|B2HGS5|RSMH_MYCMM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|183176518|gb|ACC41628.1| methyltransferase [Mycobacterium marinum M]
          Length = 345

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 115/316 (36%), Positives = 173/316 (54%), Gaps = 18/316 (5%)

Query: 19  DHVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDP 68
            HVPVL ++ + LL PA           V++DAT GAGG++  F        +I LDRDP
Sbjct: 14  HHVPVLAQRCVELLRPALTRHHADGSEAVLVDATIGAGGHAERFLTELPGLRLIGLDRDP 73

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSSMQIDCGD 122
            A+   +  +  + ++ +L    +  L   + + G      +DG +FDLGVSSMQ+D  +
Sbjct: 74  SALEIVRTRLARFADRVTLVHTRYDGLASALTELGYGAAQSIDGALFDLGVSSMQLDQAE 133

Query: 123 RGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGF++ K  PLDMRM+  S +SA+D++N  +   L  IL   GEE+ A RIA  I++RR 
Sbjct: 134 RGFAYSKDAPLDMRMNPQSALSAADIINTYDEAALADILHRYGEERFARRIAARIIRRRA 193

Query: 182 SAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
             PF TT +L +L+ + +  + +    HPA R+FQALRI VN+E+  L   + +A  AL 
Sbjct: 194 DKPFTTTAELVALLYEAIPAAARRTGGHPAKRTFQALRIAVNDELGSLRSAIPAAMDALA 253

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300
            GG ++V+++ SLEDR+VK+ FA        +   +    H   F+S+T         +V
Sbjct: 254 VGGRIVVMAYQSLEDRIVKRVFADAVASRTPMDLPVELPGHGPRFRSLTHGAERADAAEV 313

Query: 301 AFNRRSRSAKLRAGMR 316
             N RS   +LRA  R
Sbjct: 314 ERNPRSAPVRLRALER 329


>gi|302338060|ref|YP_003803266.1| S-adenosyl-methyltransferase MraW [Spirochaeta smaragdinae DSM
           11293]
 gi|301635245|gb|ADK80672.1| S-adenosyl-methyltransferase MraW [Spirochaeta smaragdinae DSM
           11293]
          Length = 320

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 117/309 (37%), Positives = 174/309 (56%), Gaps = 8/309 (2%)

Query: 20  HVPVLLEKVIALLNPA-PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76
           H  V+ E+    L+PA    +++D T G GG+S  F     G  ++ LD D   +   ++
Sbjct: 10  HRSVMAEEAFHYLSPALEKGLLVDCTLGEGGHSELFLSRLPGCRIVGLDADEKILEVARQ 69

Query: 77  TMRDYKEQFSLFQATFS-QLQDY-VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
            +  + E+  LF   F+   +DY + D+  D V+FDLG+S    +   RGFSF++  PLD
Sbjct: 70  RLAPFGERVRLFNTWFNVFFRDYPLGDERPDAVLFDLGISVFHYERSGRGFSFREDEPLD 129

Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MR+      SA+D++N    K+L  ++   GEE+ + R A AIV RRQS PF TT++L  
Sbjct: 130 MRLEAHLEQSAADIINTYPEKELADLIFRFGEERLSRRFASAIVARRQSKPFTTTKELEE 189

Query: 194 LIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +I      S ++ RIHPATR+FQALRI VN E+  L   L  A   L+ GG++ V+SFHS
Sbjct: 190 VIWTASPQSYRHGRIHPATRTFQALRIAVNGELARLESALGDAFARLRPGGMMGVISFHS 249

Query: 253 LEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           LEDR+VK FF  +    ++     I S+      + +TKK + PT+E+V  N  SRSAK 
Sbjct: 250 LEDRIVKHFFLDKKKGCISSSGAPIDSDRGVTAAEILTKKPLRPTEEEVRVNAPSRSAKF 309

Query: 312 RAGMRTVER 320
           R   + ++ 
Sbjct: 310 RVVRKLIDE 318


>gi|315638233|ref|ZP_07893415.1| S-adenosyl-methyltransferase MraW [Campylobacter upsaliensis JV21]
 gi|315481769|gb|EFU72391.1| S-adenosyl-methyltransferase MraW [Campylobacter upsaliensis JV21]
          Length = 304

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 102/301 (33%), Positives = 165/301 (54%), Gaps = 8/301 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQE 76
            H+PVL ++V  L       + LD T G GG+S +  KM    ++IA D+D  A+   +E
Sbjct: 4   PHIPVLPKEVNHLFEKLNEGLFLDCTLGYGGHSENLLKMHPNLHLIACDQDEEALQFSKE 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
            ++++  +  L+ + FSQ+ + +  K + G++ D+GVSS+ +D  +RGFS + +  LDMR
Sbjct: 64  RLKEFDARIRLYHSNFSQILEQIDLKNLRGILADIGVSSLHLDKDERGFSLRSN-FLDMR 122

Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M  S  +SA DV+N  + + L  I  I GE K  + +A  I+K R      + ++L  ++
Sbjct: 123 MDKSQSLSAFDVINTYSKEKLADIFKIYGELKDGAFLAEKIIKARAKKQIISAKELCEIL 182

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
             T    KN +I  A  +FQALRI VN E+E L   L+  EKA     +L ++ FHSLED
Sbjct: 183 GNT--RLKNRKISQAILAFQALRIEVNKELEVLELFLQKLEKAHLRDCILAIICFHSLED 240

Query: 256 RLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           R+VK +F   +   +           A+  + + ++KK + P +E++  N RS  AK+RA
Sbjct: 241 RIVKNYFKKWAKACICDERAIRCECGANHNLGEILSKKPITPDKEEIKANPRSSCAKMRA 300

Query: 314 G 314
            
Sbjct: 301 F 301


>gi|163854995|ref|YP_001629293.1| S-adenosyl-methyltransferase MraW [Bordetella petrii DSM 12804]
 gi|263445873|sp|A9I4S5|RSMH_BORPD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|163258723|emb|CAP41022.1| methyltransferase [Bordetella petrii]
          Length = 363

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 118/344 (34%), Positives = 185/344 (53%), Gaps = 35/344 (10%)

Query: 19  DHVPVLLEKVIALL----------------------NPAPGKVILDATFGAGGYSRSFCK 56
           +H PVLL   +  L                        A   V +D TFG GG+SR   +
Sbjct: 4   EHRPVLLAPTVDALLLADFAGKGAARSGRQDGAQADARAQRGVFVDGTFGRGGHSRELLR 63

Query: 57  MGS---NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFD 110
                  ++  D+DP A++   E +     + ++    F+ +++ +  +G+   DGV+ D
Sbjct: 64  RLGPEARLVVFDKDPQAIAVANE-LAAGDARVTVVHGGFAAMREELAARGIESIDGVMLD 122

Query: 111 LGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQA 169
           LGVSS Q+D   RGFSF + GPLDMRM  + G + +D + QA+V ++  ++   GEE+ A
Sbjct: 123 LGVSSPQLDDAGRGFSFMREGPLDMRMDTTRGPTVADWLAQASVDEMREVIADYGEERFA 182

Query: 170 SRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELA 229
            ++A AI  RR + P +TT +L+  +   V  ++    HPATR+FQALRI++N E+EEL+
Sbjct: 183 FQVAKAIAARRATRPLRTTLELAECVASAV-RTREKGQHPATRTFQALRIYINRELEELS 241

Query: 230 QGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQS 287
           + L SA + L  GG L V+SFHSLEDR+VK+  A+ +   +A   +    S     +++S
Sbjct: 242 RALASALELLAPGGRLAVISFHSLEDRMVKQCIAAAARPAVAHARLPLRESELPQPLYRS 301

Query: 288 ITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDDSFVHLP 331
           + +  V    E++A N R+RSA LR   RT E    D +   +P
Sbjct: 302 LGR--VQADDEEIAGNARARSAVLRVAERTTEPLGADGAAAFVP 343


>gi|218562332|ref|YP_002344111.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|20139252|sp|Q9PPL4|RSMH_CAMJE RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|112360038|emb|CAL34830.1| S-adenosyl-methyltransferase [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
          Length = 312

 Score =  316 bits (811), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 100/302 (33%), Positives = 159/302 (52%), Gaps = 9/302 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76
            H+PVLL +V  +         LD T G GG+S +  K   ++  IA D+D  A+   ++
Sbjct: 6   PHIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKNHPDLKFIACDQDQQALKFSKK 65

Query: 77  TMRDYKEQFSLFQATFSQ-LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
            ++D++ + +  Q+ FS+ L+     + + G++ D+GVSS Q+D  +RGFS      LDM
Sbjct: 66  RLKDFRNRITFMQSNFSEVLEKISHKEELRGILADIGVSSFQLDNNERGFSVNSD-FLDM 124

Query: 136 RMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM+  S ISA +++N    + LT I    GE   A  IA  I   R     ++ ++L  +
Sbjct: 125 RMNQNSKISAYEIINTYTKEQLTSIFKDYGELHDAHFIAEKICLERSKNLIKSAKELYQI 184

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           I K      + +I  AT +FQA+RI VN E++ L   L   E       +L ++SFHSLE
Sbjct: 185 IGK--GKQNHRKISKATLAFQAIRIEVNQELKVLKDFLEHLENLKPKNCILAIISFHSLE 242

Query: 255 DRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           DR+VK+FF   S   +    +       + ++ Q ITKK +  ++E++  N RS  AK+R
Sbjct: 243 DRIVKQFFKKWSKNCICNEKIMRCECGNNHSLGQIITKKAISASKEELLKNSRSSCAKMR 302

Query: 313 AG 314
           A 
Sbjct: 303 AF 304


>gi|296117529|ref|ZP_06836113.1| S-adenosyl-methyltransferase MraW [Corynebacterium ammoniagenes DSM
           20306]
 gi|295969260|gb|EFG82501.1| S-adenosyl-methyltransferase MraW [Corynebacterium ammoniagenes DSM
           20306]
          Length = 363

 Score =  316 bits (811), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 109/319 (34%), Positives = 172/319 (53%), Gaps = 20/319 (6%)

Query: 20  HVPVLLEKVIALLNPA-----PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVS 72
           HVPV+  ++  L+ PA        +I+D T GAGG++  F +      VI +DRD  +++
Sbjct: 31  HVPVMRARMAELIAPAVEAAGENAIIIDGTLGAGGHTEYFLQNFPQARVIGVDRDAASLA 90

Query: 73  CGQETMRDYKEQFSLFQATFSQLQ-----------DYVPDKGVDGVVFDLGVSSMQIDCG 121
              E +  + ++F      F ++            +     GV G +FDLGVSSMQ+D  
Sbjct: 91  EAGERLSPFADRFVGVNERFDEIGSAIAEGDGEVFEIARQHGVAGALFDLGVSSMQLDQA 150

Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           DRGF+++   PLDMRM  S GI+A+DV+N  +  +L  IL + G+E+ A +IA A++K R
Sbjct: 151 DRGFAYKVDAPLDMRMDPSAGITAADVLNTYSHGELAHILKMYGDERFAGKIASAVLKER 210

Query: 181 QSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
              PF T+  L  L+  T+  + +    HPA R+FQALR+ VN E+E + Q +     AL
Sbjct: 211 DKQPFDTSARLVELLYNTIPAATRRTGGHPAKRTFQALRVEVNGELEAIEQVIPVITSAL 270

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
             GG ++ +S+ SLED+LVK  F + +         +      A F++IT+     T+ +
Sbjct: 271 NIGGRVVFMSYQSLEDKLVKSTFKTLTTSSTPAGLPMDLPGTAAHFKTITRGSEKATEAE 330

Query: 300 VAFNRRSRSAKLRAGMRTV 318
           +A N R+ S ++RA  R  
Sbjct: 331 IAENPRAASVRVRAFERLA 349


>gi|315604430|ref|ZP_07879496.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315314136|gb|EFU62187.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 341

 Score =  316 bits (811), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 108/319 (33%), Positives = 174/319 (54%), Gaps = 12/319 (3%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSNV--IA 63
           ++ A       HVPVLL + + +L PA   PG V++DAT G GG++    +   ++  I 
Sbjct: 14  LADASRPARERHVPVLLSECLDMLAPAIGAPGAVLVDATLGMGGHTEGALERFEDLTVIG 73

Query: 64  LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFDLGVSSMQI 118
           +DRDP A++   + +  +  +F    AT+  +   + ++      VDG++ DLGVSS+Q+
Sbjct: 74  IDRDPQAIALASDRLERFGARFRAVHATYDHIDRVIEEQCGPGSRVDGILMDLGVSSLQL 133

Query: 119 DCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177
           D  DRGF++ K  PLDMRM  + G SA+D++  A+  ++ RIL   GEE+ A RIA  I+
Sbjct: 134 DEADRGFAYSKDAPLDMRMDPTTGPSAADLLASASEGEIVRILRTYGEERFAPRIARLII 193

Query: 178 KRRQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236
           +RR  AP   T +L  +++  +   ++ +  +PA R+FQALR+ VN+E+  L + L  A 
Sbjct: 194 RRRDEAPITRTGELVDIVRSAIPAPARRSGGNPAKRTFQALRVAVNDELTILERALPRAL 253

Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296
            +L+ GG L+V ++ SLEDR+VK      +         I  +      + +TK      
Sbjct: 254 ASLRVGGRLVVEAYQSLEDRIVKDVLRRGATSAAPPGLPIVPDEMAPSLRLLTKGANRAD 313

Query: 297 QEDVAFNRRSRSAKLRAGM 315
           Q +   N RS S +LR   
Sbjct: 314 QAEQDHNPRSASVRLRGAE 332


>gi|117928210|ref|YP_872761.1| S-adenosyl-methyltransferase MraW [Acidothermus cellulolyticus 11B]
 gi|263433362|sp|A0LTL5|RSMH_ACIC1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|117648673|gb|ABK52775.1| S-adenosyl-methyltransferase MraW [Acidothermus cellulolyticus 11B]
          Length = 329

 Score =  316 bits (811), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 109/309 (35%), Positives = 176/309 (56%), Gaps = 13/309 (4%)

Query: 9   MSSAIHHTIGD---HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--N 60
           M++    ++     H PV++++V+ LL PA   PG +++DAT G GG++ +  +  S   
Sbjct: 1   MTADPGSSVPPAVVHRPVMVDRVVELLLPALGYPGAIVVDATVGLGGHAEAVVRAASAAT 60

Query: 61  VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQ 117
           +I LD DP A+    + +  Y ++  L    F +L   + ++G+     ++FDLG+SS+ 
Sbjct: 61  LIGLDHDPHAIRLAAQRLAGYADRVQLVNVAFDRLAQVLSERGISAVAAILFDLGLSSLH 120

Query: 118 IDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
           ID   RGF++ +  PLDMRM      +A+DVVN  +  +L R+L + GEE+ A RIA AI
Sbjct: 121 IDDPARGFAYSRDVPLDMRMDPRLPRTAADVVNTYSATELARVLRVYGEERFAVRIADAI 180

Query: 177 VKRRQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           V+RR   P  +T+DLS L+++ +   ++    HPA R+FQALRI VN+E+  L + L  A
Sbjct: 181 VRRRARQPITSTRDLSELVREAIPAPARRTGGHPAKRTFQALRIEVNDELGRLERTLPVA 240

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295
             AL+ GG ++V+S+HSLEDR VK+FF + +                   + +T+    P
Sbjct: 241 IAALQPGGRIVVLSYHSLEDRTVKRFFQAAASDATPAGLPTALPTARPRLRLLTRGAERP 300

Query: 296 TQEDVAFNR 304
           +  +VA N 
Sbjct: 301 SPAEVAANP 309


>gi|57242049|ref|ZP_00369989.1| S-adenosyl-methyltransferase MraW [Campylobacter upsaliensis
           RM3195]
 gi|57017241|gb|EAL54022.1| S-adenosyl-methyltransferase MraW [Campylobacter upsaliensis
           RM3195]
          Length = 304

 Score =  316 bits (811), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 103/301 (34%), Positives = 165/301 (54%), Gaps = 8/301 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQE 76
            H+PVL ++V  L       + LD T G GG+S +  KM    ++IA D+D  A+   +E
Sbjct: 4   PHIPVLPKEVNHLFEKLNEGLFLDCTLGYGGHSENLLKMHPNLHLIACDQDEEALQFSKE 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
            +R++  +  L+ + FSQ+ + +  K + G++ D+GVSS+ +D  +RGFS + +  LDMR
Sbjct: 64  RLREFDARIRLYHSNFSQILEQIDLKNLRGILADIGVSSLHLDKDERGFSLRSN-FLDMR 122

Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M  S  +SA DV+N  + + L  I  I GE K  + +A  I+K R      + ++L  ++
Sbjct: 123 MDKSQSLSAFDVINTYSKEKLANIFKIYGELKDGAFLAEKIIKARAKKQIISAKELCEIL 182

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
             T    KN +I  A  +FQALRI VN E+E L   L+  EKA     +L ++ FHSLED
Sbjct: 183 SNT--RLKNRKISQAILAFQALRIEVNKELEVLELFLQKLEKAHLRDCILAIICFHSLED 240

Query: 256 RLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           R+VK +F   +   +           A+  + + ++KK + P +E++  N RS  AK+RA
Sbjct: 241 RIVKNYFKKWAKACICDERAIRCECGANHNLGEILSKKPITPDKEEIKANPRSSCAKMRA 300

Query: 314 G 314
            
Sbjct: 301 F 301


>gi|315637346|ref|ZP_07892564.1| S-adenosyl-methyltransferase MraW [Arcobacter butzleri JV22]
 gi|315478389|gb|EFU69104.1| S-adenosyl-methyltransferase MraW [Arcobacter butzleri JV22]
          Length = 300

 Score =  316 bits (811), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 97/301 (32%), Positives = 162/301 (53%), Gaps = 12/301 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76
            H+PVL  +V+          I+D T G  G+S        N  +I  D+D  A++  ++
Sbjct: 4   PHIPVLYNEVLETFKDTNEGYIIDCTTGFAGHSSGLLNQNQNIKLICNDQDDEALAFSKK 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
            +  ++ +    +  F  + +   D  + GV+ D+GVSS+Q+D  +RGF F+    LDMR
Sbjct: 64  RVEKFENRVIFNKGNFEHVIETFKDYEIRGVLADIGVSSLQLDKLERGFGFES-LTLDMR 122

Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M+ +  + A+ VVN  +  +L RI    GE ++  ++A  IV  R   PF ++++L+  +
Sbjct: 123 MNQNQSLDAATVVNTYSQTELERIFKDYGEVREYKKVASLIVNNR---PFNSSKELADFL 179

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
            K +      ++HPAT  FQA+RI VN+E+  L +   S EKA     ++ ++SFHSLED
Sbjct: 180 SKKMS---KGKLHPATLPFQAIRIEVNDELGVLERLFDSLEKAKLKDCIVAIISFHSLED 236

Query: 256 RLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           R+VK +F   S   +   ++       + A+ + ITKK ++PT  ++  N RSRS+KLR 
Sbjct: 237 RIVKNYFKKWSKSCICPDNVFRCECGNNHALGKIITKKPIIPTALEIKQNPRSRSSKLRV 296

Query: 314 G 314
            
Sbjct: 297 F 297


>gi|168023286|ref|XP_001764169.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162684609|gb|EDQ71010.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 329

 Score =  316 bits (811), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 109/329 (33%), Positives = 163/329 (49%), Gaps = 30/329 (9%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCG 74
             HV VLL +V+A          +D T GA G++ +  +    +   I  D DP A S  
Sbjct: 1   APHVAVLLNEVLAKFRDRRILSFVDCTLGAAGHASAILREHPELESFIGFDVDPVAHSEA 60

Query: 75  QETMRDYKE---QFSLFQATFSQLQDY-------VPDKGVDGVVFDLGVSSMQIDCGDRG 124
           +  ++       Q  L    F  ++         +  +GV+G++ DLG+SSMQ+D  +RG
Sbjct: 61  KPRLQAMASSDVQLHLVLTNFRNIKKAVNGADAKLVHEGVNGILMDLGMSSMQVDMAERG 120

Query: 125 FSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           FSF K GP DMRM  S  ++A +++N+    ++ RIL   GEEK+   +A  IV +R + 
Sbjct: 121 FSFMKDGPADMRMDPSASLTAEEILNKWPEAEVARILRDYGEEKRWKHLARKIVDKRLAG 180

Query: 184 PFQTTQDLSSLIQKTVYFSKNNRI--HPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
              +T +L  +I    +         HPATR+FQALRI VN+E+  L   L  A   L  
Sbjct: 181 GIHSTSELVKVIGGNTFGRPGKGKAVHPATRTFQALRIAVNDELRTLETALADAFDLLAP 240

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHP--------------AVFQS 287
            G L V+SFHSLEDR+VK+FF   +G   AV      +                 ++   
Sbjct: 241 KGRLAVISFHSLEDRIVKRFFLKAAGIGQAVEDNEMGSEPQGDDFSLRDKNVLEGSIGVV 300

Query: 288 ITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           +TK+ +V   +++  N RSRSAKLR   +
Sbjct: 301 LTKRPIVAEADEINTNPRSRSAKLRVIEK 329


>gi|312880226|ref|ZP_07740026.1| S-adenosyl-methyltransferase MraW [Aminomonas paucivorans DSM
           12260]
 gi|310783517|gb|EFQ23915.1| S-adenosyl-methyltransferase MraW [Aminomonas paucivorans DSM
           12260]
          Length = 324

 Score =  316 bits (811), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 111/309 (35%), Positives = 167/309 (54%), Gaps = 27/309 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKV-ILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76
           HVPV+L++V+  L P   +V ++D T GA G++R+         ++ +D+DP A+   + 
Sbjct: 4   HVPVMLQEVLEALRPWEEQVCVVDGTLGAAGHARAILANCPRCRLVGIDQDPSALDEARL 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  Y ++ +L    F  L   +P   +      +FDLGVSSMQID  +RGFSF   GPL
Sbjct: 64  NLAPYGDRVTLIPGNFRDLSTLLPRYEIKVCSAFLFDLGVSSMQIDREERGFSFHGEGPL 123

Query: 134 DMRMSCS----GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQTT 188
           DMRM       G++A+D+VN   + DL  +    GE+  A  IA AIV  R+   P  TT
Sbjct: 124 DMRMDSGTLSRGVTAADIVNSWELGDLIGLFRRYGEDPFAVPIARAIVMHRERYGPLMTT 183

Query: 189 QDLSSLIQKTVYFS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           + L +LI++T+     +    HPA R FQALRI VN+E+E L + L S          ++
Sbjct: 184 ESLVALIRRTLPAPAQRKAGTHPARRIFQALRIAVNDEMEALRETLESLPSFCGDPSTVV 243

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
            +++HSLEDRLVK+   + + +                   +TKK +VP +E++  N+RS
Sbjct: 244 FITYHSLEDRLVKQHMKTWAAEG--------------KGLLVTKKPLVPREEEIRENKRS 289

Query: 307 RSAKLRAGM 315
           RSAKLR   
Sbjct: 290 RSAKLRVFR 298


>gi|154482529|ref|ZP_02024977.1| hypothetical protein EUBVEN_00196 [Eubacterium ventriosum ATCC
           27560]
 gi|149736554|gb|EDM52440.1| hypothetical protein EUBVEN_00196 [Eubacterium ventriosum ATCC
           27560]
          Length = 365

 Score =  316 bits (810), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 103/326 (31%), Positives = 163/326 (50%), Gaps = 28/326 (8%)

Query: 5   SCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNV 61
           + + + S      G H+ + +++++  L+  PG++ LDAT G GG++    K      ++
Sbjct: 53  TIEKVISKGSTPAGMHISICVKEILEFLDIKPGQIGLDATLGYGGHTLQMLKKLDRKGHI 112

Query: 62  IALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQ 117
             LD DP  +    + + D     +  +     F  +     + G  D ++ DLGVSSMQ
Sbjct: 113 YGLDIDPIEIKKTTKRLADKGFGKDVLTTINTNFRNIDQVAKEHGPFDFILADLGVSSMQ 172

Query: 118 IDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
           ID  +RGF+++  GPLD+R++   GISA++ +   +V +L  +     +E  A  IA AI
Sbjct: 173 IDNPERGFTYKYEGPLDLRLNPEKGISAAERLRDISVDELEGMFIENSDEPYAYEIAKAI 232

Query: 177 VKR-RQSAPFQTTQDLSSLIQK---TVYFSKNNR--IHPATRSFQALRIFVNNEIEELAQ 230
           V R R +   +TT DL ++I+K    V   +          R FQALRI VNNE E L  
Sbjct: 233 VARNRTNNKIETTTDLKNVIEKSLCVVPQKERKEAVKKSCARVFQALRIDVNNEFEVLYD 292

Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK 290
            L     AL +GG + V++FHS EDRLVKK F +                   V+  + K
Sbjct: 293 FLEKLPDALASGGRVAVLTFHSGEDRLVKKSFKAL--------------QKQGVYSEVAK 338

Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMR 316
            V+ P+ E+   N R+RS K+R  ++
Sbjct: 339 DVIRPSAEECNTNPRARSTKMRWAIK 364


>gi|325971088|ref|YP_004247279.1| ribosomal RNA small subunit methyltransferase H [Spirochaeta sp.
           Buddy]
 gi|324026326|gb|ADY13085.1| Ribosomal RNA small subunit methyltransferase H [Spirochaeta sp.
           Buddy]
          Length = 296

 Score =  316 bits (810), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 111/303 (36%), Positives = 165/303 (54%), Gaps = 18/303 (5%)

Query: 20  HVPVLLEKVIALLNPAPGK--VILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQ 75
           H  V+ ++V+  L    G+   ++D T G GG++  F     N+  I LDRD        
Sbjct: 5   HYSVMAQEVLQYLVVPEGREATMVDCTCGEGGHTHLFLSTHPNLKVIGLDRDTTIQQKAI 64

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           E M+++  +F      F+       +   D ++FDLG+SS   +   RGFSF+K   LDM
Sbjct: 65  ERMKEFGSRFEPKNIWFNDFFAQGEENVYDLILFDLGISSFHYEESHRGFSFRKDEVLDM 124

Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           R+  S  ISA DVVN    + L  ++   GEE+ + RIA +IV+RR+ A   T+++L+S+
Sbjct: 125 RLDESASISAFDVVNGYQEERLADVIFNFGEERYSRRIARSIVERRKLAKISTSEELASI 184

Query: 195 IQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           I K V  + +   IHPATR+FQA+RI VN E++ +   L+ A KALK+GG + V+SFHSL
Sbjct: 185 IYKAVPPNYRYGHIHPATRTFQAIRIEVNRELDRIEPALKGAVKALKSGGRIAVISFHSL 244

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           EDR VK  F   +                   + +TKK ++PT ++   N  SRSAKLR 
Sbjct: 245 EDRQVKWLFKGMA------------EGDEPAIRILTKKPLIPTDQEREENAASRSAKLRI 292

Query: 314 GMR 316
             +
Sbjct: 293 IEK 295


>gi|194323503|ref|ZP_03057280.1| S-adenosyl-methyltransferase MraW [Francisella tularensis subsp.
           novicida FTE]
 gi|208778997|ref|ZP_03246343.1| S-adenosyl-methyltransferase MraW [Francisella novicida FTG]
 gi|194322358|gb|EDX19839.1| S-adenosyl-methyltransferase MraW [Francisella tularensis subsp.
           novicida FTE]
 gi|208744797|gb|EDZ91095.1| S-adenosyl-methyltransferase MraW [Francisella novicida FTG]
          Length = 299

 Score =  316 bits (810), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 114/303 (37%), Positives = 175/303 (57%), Gaps = 16/303 (5%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMRDYK 82
           +++ I  LN  P  + +DATFG GG+S++         +IA D+D  A+S  +E  +   
Sbjct: 1   MQESINDLNINPQGIYIDATFGRGGHSKAILNRLTTGRLIAFDKDLDAISYARENFQF-- 58

Query: 83  EQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138
             F +  A+F+ + DY         +DG++ DLGVSS Q+D   RGFSF  +GPLDMRM 
Sbjct: 59  SNFEIVHASFASIYDYCLQHSLLGKIDGIIMDLGVSSPQLDNAARGFSFTHNGPLDMRMD 118

Query: 139 CS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTTQDLSSLIQ 196
            S GI+AS  + + +V DL+ I  + GEE+ A +IA  I    +Q+    TT +L+ LI+
Sbjct: 119 VSKGITASQALEELSVDDLSYIFKVYGEERFARKIALRIKDYIQQNGSISTTLELAELIR 178

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
            T+   K  + +PATR FQALRI+VNNE+++L   L +    +K+GG +  +SFHSLEDR
Sbjct: 179 ATI--GKKEKKNPATRCFQALRIYVNNELKDLEALLENILAVIKSGGRIAAISFHSLEDR 236

Query: 257 LVKKFFASRSGKVMAVRH---MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           +VK+ F++       +     M+P ++     + ITKK     ++++  N RSRSA LR 
Sbjct: 237 IVKQKFSALINPKQELNRITKMLPQDSSQIKLKWITKKS-KANEDELNQNVRSRSAILRV 295

Query: 314 GMR 316
             +
Sbjct: 296 VEK 298


>gi|260905297|ref|ZP_05913619.1| S-adenosyl-methyltransferase MraW [Brevibacterium linens BL2]
          Length = 320

 Score =  315 bits (809), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 103/314 (32%), Positives = 171/314 (54%), Gaps = 15/314 (4%)

Query: 20  HVPVLLEKVIALL-----NPAPGK---VILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69
           HVPVLLE+V+ L+              +++D T G GG+S +        ++I +DRD  
Sbjct: 5   HVPVLLERVVELIGVGVQAARDNGHPPIVVDGTLGMGGHSEAVLTAFPDVHLIGVDRDTQ 64

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFS 126
           A+    + +  + ++  +  A   ++ + + D GVD    V+ DLGVSS+Q+D  +RGFS
Sbjct: 65  AIDIATKRLAPFVDRTDIVHAVDDEIPEILDDLGVDRISAVLLDLGVSSLQLDEDERGFS 124

Query: 127 FQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           + +  PLDMRM     ++A++V+      +L RIL   GEEK A RIA+ IV  R++ P+
Sbjct: 125 YSRPAPLDMRMDRTQSLTAAEVLATYPEAELRRILREYGEEKMAGRIANIIVTDRETTPW 184

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           +T+Q L++++ + +  +K  + HPA R+FQALRI VN+E+  L   L  A +AL  GG+ 
Sbjct: 185 ETSQQLAAMLSRVLPQTK-KKSHPAKRTFQALRIEVNDELGVLRTALPEALRALHLGGVA 243

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           ++ S+ SLED +VKK F + +         +           I +   +   ++   N R
Sbjct: 244 VIESYQSLEDTIVKKIFRAGTSTSAPPDMPVVPEELQPWLSEIIRGAELADSDEADRNPR 303

Query: 306 SRSAKLRAGMRTVE 319
           ++S +LRA  +  E
Sbjct: 304 AKSVRLRAVQKIRE 317


>gi|312373365|gb|EFR21121.1| hypothetical protein AND_17511 [Anopheles darlingi]
          Length = 384

 Score =  315 bits (808), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 122/355 (34%), Positives = 180/355 (50%), Gaps = 48/355 (13%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRD 67
           ++        H PV+  + +  L P   +  +D TFGAGG+SR+      G+ +IALDRD
Sbjct: 28  TADPASRTTPHRPVMAGETVRFLEPQNNQTFIDMTFGAGGHSRALLGAAPGATIIALDRD 87

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP--------DKGVDGVVFDLGVSSMQID 119
           P A     E   +Y  +      +FS+L   +          + +DG++FD G SSMQ D
Sbjct: 88  PHAHRLACEMATEYPGRILPVLGSFSELPSLLRTLPEGYGRQRFIDGIIFDFGCSSMQFD 147

Query: 120 CGDRGFSFQKSGPLDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175
              RGFS    GPLDMRM        +SA++V+ +   +DL RIL + GEEKQA +IA A
Sbjct: 148 EAARGFSIAHDGPLDMRMDKDRCPEQLSAAEVLARVQEQDLARILKVYGEEKQAKKIARA 207

Query: 176 IVKRRQS-APFQTTQDLSSLIQKTVYFSK--------------------NNRIHPATRSF 214
           IV  R +    +TT +L+S++   +  ++                        H AT++F
Sbjct: 208 IVNARFTVKRIETTAELASIVAHCLSSNQATETGPVSSASSFEYRQDKLRRPAHVATKTF 267

Query: 215 QALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH 274
           QALRIFVNNE+ E+  G+  A+  L+ GG L+ ++FHSLED +VK+         +A R 
Sbjct: 268 QALRIFVNNELNEINYGMVLAKHLLRTGGKLVTIAFHSLEDTIVKRHLTGHVVDDVASRV 327

Query: 275 MIP-------------SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
            +                     ++ +TK VVVP++ +V  N RSRSAKLRA +R
Sbjct: 328 PLQFISHTLAHENDTMQEMMKPNWRQLTKHVVVPSEAEVTANPRSRSAKLRAAVR 382


>gi|271964366|ref|YP_003338562.1| S-adenosylmethionine-dependentmethyltransferase [Streptosporangium
           roseum DSM 43021]
 gi|270507541|gb|ACZ85819.1| S-adenosylmethionine-dependentmethyltransferase [Streptosporangium
           roseum DSM 43021]
          Length = 330

 Score =  315 bits (808), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 112/300 (37%), Positives = 175/300 (58%), Gaps = 10/300 (3%)

Query: 15  HTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPF 69
           H  G HVPV+LE+V+ LL PA   P  V++DA  G GG++ +        ++I +DRDP 
Sbjct: 11  HAPGGHVPVMLERVLELLAPALAGPAPVVVDANLGLGGHAEALLAAHPSLHLIGIDRDPT 70

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFS 126
           A+      +  Y E+ +L +A   +L + + + G   VD V+FDLGVSS Q+D  +RGF+
Sbjct: 71  AIERSTARLAPYAERTTLVRAVSDELTEVLAEAGRPRVDAVLFDLGVSSPQLDEAERGFA 130

Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           +    PLDMRM     ++A  VVN  +  +L RIL   GEE+ A R+A  I+K R +   
Sbjct: 131 YSYDAPLDMRMDRDQELTAEIVVNTYSAAELIRILRDYGEERFAPRVARLIIKERGNEAI 190

Query: 186 QTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
            +T+ L+ +++  +  + +    +PA R+FQALRI VN E+  L + L +A  AL  GG 
Sbjct: 191 TSTKRLAEIVRTAIPAATRRTGGNPAKRTFQALRIEVNAELTALERALPAALDALTLGGR 250

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           ++V+++HSLEDRL K+  A+R+ +       +P  AH   F  +T+   +P++E+VA N 
Sbjct: 251 VVVLAYHSLEDRLTKQVLAARTRETGPPGLPVPLPAHQPRFALLTRGAELPSEEEVARNP 310


>gi|108800230|ref|YP_640427.1| S-adenosyl-methyltransferase MraW [Mycobacterium sp. MCS]
 gi|119869358|ref|YP_939310.1| S-adenosyl-methyltransferase MraW [Mycobacterium sp. KMS]
 gi|122976793|sp|Q1B6W3|RSMH_MYCSS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262825146|sp|A1UI62|RSMH_MYCSK RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|108770649|gb|ABG09371.1| methyltransferase [Mycobacterium sp. MCS]
 gi|119695447|gb|ABL92520.1| S-adenosyl-methyltransferase MraW [Mycobacterium sp. KMS]
          Length = 324

 Score =  315 bits (808), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 121/318 (38%), Positives = 180/318 (56%), Gaps = 18/318 (5%)

Query: 19  DHVPVLLEKVIALLNPA-----PGK---VILDATFGAGGYSRSFCKMGS--NVIALDRDP 68
           +H+PVLL++ + LL PA     P     V++DAT GAGG++  F       ++I LDRDP
Sbjct: 2   EHIPVLLDRCVELLTPALTRRNPDGRGAVLVDATLGAGGHAHRFLSDLPGLHLIGLDRDP 61

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGF 125
            A+    E +  + ++ SL +  +  + D +   GV    G +FDLGVSSMQ+D  +RGF
Sbjct: 62  QALQIAGERLAPFGDRVSLVRTRYDGIDDALAQTGVAEVSGFLFDLGVSSMQLDRTERGF 121

Query: 126 SFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           S+    PLDMRM     ++A+DVVN    KD+TRIL   GEE+ A+RIA  IV+RR   P
Sbjct: 122 SYSADAPLDMRMDSDAPLTAADVVNTFAEKDITRILREFGEERFAARIAKHIVRRR---P 178

Query: 185 FQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
             TT +L  L+   +   ++    HPA R+FQALRI VN+E++ L   + +A  AL+ GG
Sbjct: 179 LNTTGELVELLYDAIPAPARRTGGHPAKRTFQALRIAVNSELDSLRAAVPAALAALETGG 238

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            ++V+++ SLEDR+VK  FA+ +         +    H   F ++T+     T E++  N
Sbjct: 239 RIVVMAYQSLEDRIVKTEFAAATASRTPPGLPVELPGHEPEFVALTRGAERATPEEIERN 298

Query: 304 RRSRSAKLRAGMRTVERS 321
            RS   +LRA  +   R 
Sbjct: 299 PRSAPVRLRALEKVAGRP 316


>gi|291278991|ref|YP_003495826.1| S-adenosyl-methyltransferase [Deferribacter desulfuricans SSM1]
 gi|290753693|dbj|BAI80070.1| S-adenosyl-methyltransferase [Deferribacter desulfuricans SSM1]
          Length = 306

 Score =  315 bits (808), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 107/307 (34%), Positives = 170/307 (55%), Gaps = 9/307 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQE 76
            H PVL  ++I+        VI+D T G GG++    K      +I LDRD  A+    E
Sbjct: 1   MHKPVLYNELISFFKGLKNGVIVDCTGGGGGHAEGILKEIKPERLIILDRDEDAIKRLNE 60

Query: 77  TMRDYKEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             +   E   ++++ FS++   +     + V+G+  D GVS+  +    RGFSF+++GPL
Sbjct: 61  KFKGM-ENVEIYKSNFSEIDSVLQSLKIEKVNGLYADFGVSNFHLLDSKRGFSFRRNGPL 119

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  S  ++A  VVN+ + + L  I    GEE+ AS+IA AIVK R+S    TT +L+
Sbjct: 120 DMRMDKSLYLTAEKVVNEYSAETLKNIFRKFGEERFASKIADAIVKTRKSKRITTTLELA 179

Query: 193 SLIQKTVYFSKNN-RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            +++  +    +   +HPAT+ F ALRIF+NNE+E +   L+     +  GG++  +SFH
Sbjct: 180 EIVKNAIPERFHKPGVHPATKVFMALRIFINNELESIESLLKKLPTIVDKGGIVAFISFH 239

Query: 252 SLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDRLVK++        +      + +      F+ +TKK + PT++++  N  SRSAK
Sbjct: 240 SLEDRLVKEYLQYYEKSCICPPDYPVCNCDKEKQFKILTKKPITPTEKEITENPLSRSAK 299

Query: 311 LRAGMRT 317
           +R G+R 
Sbjct: 300 MRVGVRV 306


>gi|157737563|ref|YP_001490246.1| S-adenosyl-methyltransferase MraW [Arcobacter butzleri RM4018]
 gi|172045652|sp|A8EUF3|RSMH_ARCB4 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|157699417|gb|ABV67577.1| S-adenosyl-methyltransferase [Arcobacter butzleri RM4018]
          Length = 300

 Score =  315 bits (808), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 97/301 (32%), Positives = 161/301 (53%), Gaps = 12/301 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76
            H+PVL  +V+          I+D T G  G+S        N  +I  D+D  A++  ++
Sbjct: 4   PHIPVLYNEVLETFKDINEGYIIDCTTGFAGHSSGLLNQNQNIKLICNDQDDEALAFSKK 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
            +  ++      +  F  + +   D  + GV+ D+GVSS+Q+D  +RGF F+    LDMR
Sbjct: 64  RLEKFENGVIFNKGNFEHVIETFKDYEIRGVLADIGVSSLQLDKLERGFGFES-LTLDMR 122

Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M+ +  + A+ VVN  +  +L RI    GE ++  ++A  IV  R   PF ++++L+  +
Sbjct: 123 MNQNQSLDAATVVNTYSQTELERIFKDYGEVREYKKVASLIVNNR---PFNSSKELADFL 179

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
            K +      ++HPAT  FQA+RI VN+E+  L +   S EKA     ++ ++SFHSLED
Sbjct: 180 SKKMS---KGKLHPATLPFQAIRIEVNDELGVLERLFDSLEKAKLKDCIVAIISFHSLED 236

Query: 256 RLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           R+VK +F   S   +   ++       + A+ + ITKK ++PT  ++  N RSRS+KLR 
Sbjct: 237 RIVKNYFKKWSKSCICPDNVFRCECGNNHALGKIITKKPIIPTALEIKQNPRSRSSKLRV 296

Query: 314 G 314
            
Sbjct: 297 F 297


>gi|330444381|ref|YP_004377367.1| S-adenosyl-methyltransferase MraW [Chlamydophila pecorum E58]
 gi|328807491|gb|AEB41664.1| S-adenosyl-methyltransferase MraW [Chlamydophila pecorum E58]
          Length = 296

 Score =  315 bits (808), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 110/303 (36%), Positives = 167/303 (55%), Gaps = 20/303 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI---ALDRDPFAVSCGQE 76
           H+PVL+ + ++L + +  +   D T GAGG++++F     ++    A DRDP A++   +
Sbjct: 5   HIPVLVHECLSLFSQSTPRKFCDVTVGAGGHAKAFLTAYPSITSYDASDRDPLALTLSSQ 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ-KSGPLDM 135
            +  +KE+  L  A+F  L   + +   DGV+ DLGVSSMQ+D   RGFSFQ +   LDM
Sbjct: 65  ALEPFKERVHLRHASFQDLSHSLEEHVYDGVIADLGVSSMQLDDLSRGFSFQGEEHYLDM 124

Query: 136 RMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM  + GISAS+V+     ++L +I    GEE    + A AIV  R+    +T +DL   
Sbjct: 125 RMDPTQGISASEVLQCLREEELGKIFREYGEEPLWRQAAKAIVHFRKHKRIETVRDLKEA 184

Query: 195 IQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
             +     +   +IHP T  FQALR+FVN E ++L   L SA + L   G ++++SF S 
Sbjct: 185 TSRVFPSYRLRKKIHPLTLIFQALRVFVNGEDQQLRTLLESAMRWLAPQGRVVIISFCSS 244

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           EDR VK+FF       +               + +TKKV++PT +++  N RSRSAKLR 
Sbjct: 245 EDRPVKQFFRHAEATGLG--------------RVVTKKVIMPTFQEIRRNPRSRSAKLRC 290

Query: 314 GMR 316
             +
Sbjct: 291 FEK 293


>gi|187479357|ref|YP_787382.1| S-adenosyl-methyltransferase MraW [Bordetella avium 197N]
 gi|123738495|sp|Q2KVE4|RSMH_BORA1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|115423944|emb|CAJ50496.1| S-adenosyl-methyltransferase [Bordetella avium 197N]
          Length = 355

 Score =  315 bits (808), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 123/351 (35%), Positives = 183/351 (52%), Gaps = 31/351 (8%)

Query: 19  DHVPVLLEKVIALL-------------NPAPG---------KVILDATFGAGGYSRSFCK 56
           +H PVLLE  +  L              P             + +D TFG GG+SR    
Sbjct: 4   EHRPVLLEPTVDALLQADFGGRGASRARPRDEAAALTRQATGIFVDGTFGRGGHSRELLG 63

Query: 57  MGS---NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFD 110
                  ++  D+DP A++  Q    +   + ++    F+ + + +  +G+   DGV+ D
Sbjct: 64  RLGPQARLVVFDKDPEAIAVAQALAAE-DARVTVVHGGFATMTEELAARGIERIDGVMLD 122

Query: 111 LGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQA 169
           LGVSS QID  DRGFSF + GPLDMRM  S G + +D + QA+V+++  ++   GEE+ A
Sbjct: 123 LGVSSPQIDDADRGFSFMREGPLDMRMDTSRGPTVADWLAQASVEEMREVIADYGEERFA 182

Query: 170 SRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELA 229
            ++A AI  RR + P  TT +L+  +   V  ++    HPATR+FQALRI++N E+EELA
Sbjct: 183 FQVAKAIAARRATRPLHTTLELAECVASAV-RTREKGQHPATRTFQALRIYINRELEELA 241

Query: 230 QGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT 289
           + L SA + L  GG L V+SFHSLEDR+VK+  A+ +    A   +    +        T
Sbjct: 242 RALASAIELLVPGGRLAVISFHSLEDRMVKQCIAAAARPAAAHPRLPLRESELPQPILQT 301

Query: 290 KKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDDSFVHLPRLPTLSQFR 340
              VV    +VA N RSRSA LRA  RT +      +   +P +P  ++  
Sbjct: 302 LGKVVADDAEVAGNARSRSAILRAAERTSQPLPATGAEDFVPAVPGAAEKG 352


>gi|15604993|ref|NP_219777.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis D/UW-3/CX]
 gi|76788994|ref|YP_328080.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis A/HAR-13]
 gi|237804617|ref|YP_002888771.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|255311073|ref|ZP_05353643.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis 6276]
 gi|255317374|ref|ZP_05358620.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis 6276s]
 gi|20138894|sp|O84274|RSMH_CHLTR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|88909193|sp|Q3KM90|RSMH_CHLTA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|3328685|gb|AAC67865.1| PBP2B Family methyltransferase [Chlamydia trachomatis D/UW-3/CX]
 gi|76167524|gb|AAX50532.1| MraW [Chlamydia trachomatis A/HAR-13]
 gi|231272917|emb|CAX09828.1| S-adenosyl-L-methionine-dependent methyltransferase [Chlamydia
           trachomatis B/TZ1A828/OT]
 gi|296435788|gb|ADH17962.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis G/9768]
 gi|296436713|gb|ADH18883.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis G/11222]
 gi|296437648|gb|ADH19809.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis G/11074]
 gi|297140147|gb|ADH96905.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis G/9301]
 gi|297748402|gb|ADI50948.1| MraW [Chlamydia trachomatis D-EC]
 gi|297749282|gb|ADI51960.1| MraW [Chlamydia trachomatis D-LC]
          Length = 300

 Score =  315 bits (808), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 111/317 (35%), Positives = 167/317 (52%), Gaps = 25/317 (7%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI---ALD 65
           M+ +I      H+PVL+++ ++L       V  D T GAGG++ +F     ++      D
Sbjct: 1   MTDSI-----PHIPVLVKESLSLFRDRNPVVFCDVTVGAGGHAEAFLTEFPSIERYDGSD 55

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125
           RD  A++  +  +  +K++  L  A+F ++     D   DGV+ DLGVSSMQ++  +RGF
Sbjct: 56  RDLSALALSENRLLPFKDRVRLRHASFEEVDTLTSDGTYDGVLADLGVSSMQLNNLERGF 115

Query: 126 SFQ-KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           SFQ +  PLDMRM  S G++AS+V+N    +++  I    GEE      A A+V  R+  
Sbjct: 116 SFQGEDHPLDMRMDTSRGMTASEVLNSLREEEIGEIFRNYGEEPLWRSAAAAVVHFRKKK 175

Query: 184 PFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
              T +DL           +   +IHP T  FQALRI+VN E  +L   L SA + L+ G
Sbjct: 176 KILTVKDLKDATSGVFPSYRLRKKIHPLTLIFQALRIYVNQEGAQLKVLLDSAFRWLRPG 235

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G L V+SF SL+DR VK  F     + +               + +TKKV++P+ E+   
Sbjct: 236 GRLAVISFCSLDDRPVKWAFREAEARGLG--------------KILTKKVIMPSYEETRM 281

Query: 303 NRRSRSAKLRAGMRTVE 319
           N RSRSAKLR   ++ E
Sbjct: 282 NPRSRSAKLRCFEKSFE 298


>gi|193659891|ref|XP_001947856.1| PREDICTED: probable S-adenosyl-L-methionine-dependent
           methyltransferase CG14683-like [Acyrthosiphon pisum]
          Length = 351

 Score =  315 bits (807), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 125/332 (37%), Positives = 181/332 (54%), Gaps = 28/332 (8%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAV 71
            H    H PVLLE+ I+ L+P  G  I+D TFGAGG++    +      V  LDRDP A 
Sbjct: 19  QHNSRPHKPVLLEEAISYLSPKKGHNIIDMTFGAGGHTERILQENDTTVVYCLDRDPTAC 78

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG-----VDGVVFDLGVSSMQIDCGDRGFS 126
           +  ++    Y  +    +  FS L   + + G      DG++FD G SSMQ D   RGFS
Sbjct: 79  AMAKQLSERYPNRVIPLKGKFSDLPVLLKNLGCKMNSFDGILFDFGASSMQFDTASRGFS 138

Query: 127 FQKSGPLDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-A 183
             K+GPLDMRM      I+A+DV+ +A+  DL +I  + GEEKQ+ +IA+A+++ R    
Sbjct: 139 ISKNGPLDMRMDPEEQTITAADVLAKADQSDLYKIFKVYGEEKQSKKIANAVIEARYLFK 198

Query: 184 PFQTTQDLSSLIQKTVYFSKNNRI-----HPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           P +TT+D   L+Q        + +     HPAT+ FQALRIFVNNE+ E+   +  A   
Sbjct: 199 PLKTTRDFCELVQNVCDNEMRSDMLHRPSHPATKVFQALRIFVNNELNEINHSIVLASHY 258

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFA----SRSGKVMAVRHMIPSNAHPAVF--------- 285
           LK GG+++ V+FHSLED +VK+             + ++++ P  A+   F         
Sbjct: 259 LKMGGVMVTVAFHSLEDTIVKRHIQGNINENMANTLPLKYINPMQAYDKEFMDVVNDSCW 318

Query: 286 QSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
             I K V+ P+ E+V  N RSRSA+LRA +R 
Sbjct: 319 HQIHKHVITPSVEEVESNPRSRSARLRAAVRI 350


>gi|15828964|ref|NP_326324.1| methyltransferase [Mycoplasma pulmonis UAB CTIP]
 gi|20139101|sp|Q98Q75|RSMH_MYCPU RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|14089907|emb|CAC13666.1| METHYLTRANSFERASE [Mycoplasma pulmonis]
          Length = 299

 Score =  315 bits (807), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 102/307 (33%), Positives = 159/307 (51%), Gaps = 16/307 (5%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H PVLL+ VI  L   P  + +D T G  G+S    K       +I  D+D FA+  
Sbjct: 1   MQLHKPVLLKDVIENLEINPEGIYVDLTLGYAGHSSEILKKLSSKGKLIGFDQDSFAIEK 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            ++ +    + F L    F   + Y+       VDG + DLGVSS+Q+D   RGFS+ K 
Sbjct: 61  SRQRLSQISDNFVLINDNFVNFKVYLDKMNISFVDGFLLDLGVSSVQLDFAHRGFSYSKL 120

Query: 131 GPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
           GPLDMRM+    + A D+VN  + + L +I     + K A ++A  IV  R   P + T 
Sbjct: 121 GPLDMRMNLDQPLKADDIVNGYDQESLCKIFIENADVKLAKQVAKGIVNNR---PIKDTL 177

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           +L  +I+ ++  +   + +PA   FQA+RI VN+E+  L + L  +   LK    +++++
Sbjct: 178 ELVEVIRSSLPAALVRKKNPAKAVFQAIRIAVNDELIVLKKFLAQSLDFLKKDSKMLIIT 237

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHS+EDR+VK FF  +       R  I       V      K + PT+E++A NRR++S+
Sbjct: 238 FHSIEDRIVKDFFKRQVKNKHDRRLPIMEQKDYQV------KTIKPTEEEIAQNRRAKSS 291

Query: 310 KLRAGMR 316
           KLR   +
Sbjct: 292 KLRIIKK 298


>gi|225009958|ref|ZP_03700430.1| S-adenosyl-methyltransferase MraW [Flavobacteria bacterium
           MS024-3C]
 gi|225005437|gb|EEG43387.1| S-adenosyl-methyltransferase MraW [Flavobacteria bacterium
           MS024-3C]
          Length = 308

 Score =  315 bits (807), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 105/307 (34%), Positives = 158/307 (51%), Gaps = 23/307 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H PV+L++ +A L   P  V +D TFG GG+S+   +       + A D+D  A++    
Sbjct: 7   HNPVMLQETVAGLAIDPKGVYVDVTFGGGGHSKEILRQLGPQGRLFAFDQDKDALAN--- 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           T+ D   +F+L    F  ++ ++   G   V G++ D GVSS Q D G RGFS +  G L
Sbjct: 64  TLADA--RFTLIPENFRFIKQFLRFHGIKQVHGILADFGVSSHQFDEGSRGFSTRFEGDL 121

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+ SG I+A +VV      DL  +    G+ + +  IA AI+  R+  P +TT  L 
Sbjct: 122 DMRMNQSGAITAKEVVGSYAHDDLANMFFQYGDLRNSKAIAAAIIAFREIQPIETTAQLK 181

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
             +   +    + +I      +QA+RI VN EI+ + + L      L  GG L V+S+HS
Sbjct: 182 EALAPFLKGFNDAKI--LAPIYQAIRIEVNQEIQVIKEFLAQVPDLLFPGGRLSVLSYHS 239

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV---VVPTQEDVAFNRRSRSA 309
           LEDRLVK+F  +   +    + +         F+   KKV    +PT+E+   N RSRSA
Sbjct: 240 LEDRLVKRFIRAGQFEGEPEKDIF------GHFEVPLKKVGGLQIPTKEEQRINTRSRSA 293

Query: 310 KLRAGMR 316
           KLR   +
Sbjct: 294 KLRVAEK 300


>gi|83816833|ref|YP_444696.1| S-adenosyl-methyltransferase MraW [Salinibacter ruber DSM 13855]
 gi|123529490|sp|Q2S535|RSMH_SALRD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|83758227|gb|ABC46340.1| S-adenosyl-methyltransferase MraW [Salinibacter ruber DSM 13855]
          Length = 336

 Score =  315 bits (807), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 112/323 (34%), Positives = 170/323 (52%), Gaps = 20/323 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H PVL   V A L        +DAT G GG++R+   +      V+ +DRDP A+   ++
Sbjct: 24  HAPVLSHDVQARLVTDASGRYVDATLGGGGHARALLDVLDPDGVVLGIDRDPEALETARD 83

Query: 77  TMRDYKE--QFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            + D +E  +F     TF  L+D +  +    +DG++ DLGVSS QID  +RGFSF+  G
Sbjct: 84  RLADEREAGRFWAVHGTFGNLRDVLAAEDLIPIDGLLLDLGVSSHQIDVPERGFSFRDEG 143

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM    G++A  VVN    +DL  +L   GEE +A +IA A+   R   P  TT+ 
Sbjct: 144 PLDMRMDPQRGLTAQQVVNGWGERDLRDVLREYGEESRAGQIARALCDAR---PLDTTRA 200

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ +++        + +   TR FQALRI VN E++EL Q L  A + ++ GG +  +S+
Sbjct: 201 LAEVVEDCAPPP--DTVKTLTRVFQALRIVVNAELDELEQVLEQATEVVRTGGRIAAISY 258

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDR VK++    + +    R +  +   P  +    +  +   + +V  N R+RSA 
Sbjct: 259 HSLEDRRVKRYLRYGNFEGEPRRDLYGTLVAP--WAETPRGPIEAGESEVEANPRARSAH 316

Query: 311 LRAGMRTVERSIEDDSFVHLPRL 333
           LR   R      +D++   LP L
Sbjct: 317 LRVAER----RDDDEAGAPLPPL 335


>gi|227488521|ref|ZP_03918837.1| S-adenosyl-methyltransferase MraW [Corynebacterium glucuronolyticum
           ATCC 51867]
 gi|227091415|gb|EEI26727.1| S-adenosyl-methyltransferase MraW [Corynebacterium glucuronolyticum
           ATCC 51867]
          Length = 354

 Score =  315 bits (807), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 103/320 (32%), Positives = 166/320 (51%), Gaps = 20/320 (6%)

Query: 20  HVPVLLEKVIALLN-----PAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVS 72
           HVPVL ++++ LL           +++D T GAGG++           VI +DRD  A+ 
Sbjct: 31  HVPVLRDRMVELLRRGIAVDGATGIVVDGTLGAGGHTEHLLATDPNARVIGVDRDAQALK 90

Query: 73  CGQETMRDYKEQFSLFQATFSQ-----------LQDYVPDKGVDGVVFDLGVSSMQIDCG 121
                +  + ++F      F +           L       G+ G +FDLGVSSMQ+D  
Sbjct: 91  DATARLAPFGDRFVGLNVRFDEWMEAASCSSHPLCQEAAADGISGALFDLGVSSMQLDQE 150

Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGF+++   PLDMRM  S GI+A+DV+N  +  DL R+L   GEEK A +IA A+++ R
Sbjct: 151 ERGFAYKIDAPLDMRMDPSRGITAADVLNTYSHGDLARVLKTYGEEKFAGKIASAVIRER 210

Query: 181 QSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
           +  PF  +  L  L+  T+   ++ +  HPA R+FQALR+ VN E+  L Q +     AL
Sbjct: 211 EKEPFTRSGRLVELLYDTIPAPARRHGGHPAKRTFQALRVEVNQELRALEQVIPVTADAL 270

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
             GG+++ +S+ SLED++VKK  A  +         +        F  +T+     ++++
Sbjct: 271 HVGGVMVFMSYQSLEDKIVKKALAKLTTSTNPPGLPVDLPGTEPHFALVTRGSEKASKKE 330

Query: 300 VAFNRRSRSAKLRAGMRTVE 319
           +  N R+ S ++RA  R + 
Sbjct: 331 IDQNPRAASVRVRAAQRVLN 350


>gi|166154483|ref|YP_001654601.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis 434/Bu]
 gi|166155358|ref|YP_001653613.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301335743|ref|ZP_07223987.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis L2tet1]
 gi|263446017|sp|B0B7I8|RSMH_CHLT2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263446024|sp|B0BBQ3|RSMH_CHLTB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|165930471|emb|CAP03964.1| S-adenosyl-L-methionine-dependent methyltransferase [Chlamydia
           trachomatis 434/Bu]
 gi|165931346|emb|CAP06918.1| S-adenosyl-L-methionine-dependent methyltransferase [Chlamydia
           trachomatis L2b/UCH-1/proctitis]
          Length = 300

 Score =  314 bits (806), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 111/317 (35%), Positives = 167/317 (52%), Gaps = 25/317 (7%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI---ALD 65
           M+ +I      H+PVL+++ ++L       V  D T GAGG++ +F     ++      D
Sbjct: 1   MTDSI-----PHIPVLVKESLSLFRGRNPVVFCDVTVGAGGHAEAFLTEFPSIERYDGSD 55

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125
           RD  A++  +  +  +K++  L  A+F ++     D   DGV+ DLGVSSMQ++  +RGF
Sbjct: 56  RDLSALALSENRLLPFKDRVRLRHASFEEVDTLTSDGTYDGVLADLGVSSMQLNNLERGF 115

Query: 126 SFQ-KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           SFQ +  PLDMRM  S G++AS+V+N    +++  I    GEE      A A+V  R+  
Sbjct: 116 SFQGEDHPLDMRMDTSRGMTASEVLNSLREEEIGEIFRNYGEEPLWRSAAAAVVHFRKKK 175

Query: 184 PFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
              T +DL           +   +IHP T  FQALRI+VN E  +L   L SA + L+ G
Sbjct: 176 KILTVKDLKDATSGVFPSYRLRKKIHPLTLIFQALRIYVNQEGAQLKVLLDSAFRWLRPG 235

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G L V+SF SL+DR VK  F     + +               + +TKKV++P+ E+   
Sbjct: 236 GRLAVISFCSLDDRPVKWAFREAEARGLG--------------KILTKKVIMPSYEETRM 281

Query: 303 NRRSRSAKLRAGMRTVE 319
           N RSRSAKLR   ++ E
Sbjct: 282 NPRSRSAKLRCFEKSFE 298


>gi|156405687|ref|XP_001640863.1| predicted protein [Nematostella vectensis]
 gi|156227999|gb|EDO48800.1| predicted protein [Nematostella vectensis]
          Length = 378

 Score =  314 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 129/341 (37%), Positives = 194/341 (56%), Gaps = 24/341 (7%)

Query: 11  SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPF 69
           S    T   H+PV+  + +  L P  G+V +DATFGAGG++ +        V A+DRDP 
Sbjct: 26  STQAETHTLHIPVMSRECLGFLAPKDGEVFVDATFGAGGHTCAILNSAKCKVFAVDRDPV 85

Query: 70  AVSCGQ--ETMRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGD 122
           AV   Q   T  +YK Q    Q  FS+L + + + G+     DG++ D+G SSMQ D   
Sbjct: 86  AVEIAQVLSTRPEYKGQLIPLQGKFSELFELLSNNGIKKESLDGMLLDIGPSSMQFDDPL 145

Query: 123 RGFSFQKSGPLDMRMSC---------SGISASDVVNQANVKDLTRILGILGEEKQASRIA 173
           RGFS  K GPLDMRM           S  +A+DVVN  + ++L  +L   G E+ A+RI+
Sbjct: 146 RGFSLSKDGPLDMRMDSENDTKSSRSSSFTAADVVNSISERELISVLRHYGGERDAARIS 205

Query: 174 HAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRI----HPATRSFQALRIFVNNEIEELA 229
            A++K R      TT+ L++++   V F + +++    HPAT++FQALRI VN+E+ EL 
Sbjct: 206 RAVIKARDREHIMTTRQLAAIVANAVGFGRKDKLNRFAHPATKTFQALRILVNDELNELH 265

Query: 230 QGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT 289
           + L++A+K L  GG L+V+SFHS ED +VK F    + +  +      S++    +  + 
Sbjct: 266 KALKAAKKLLTPGGRLVVISFHSAEDSIVKHFLKDEATRKSS---KTMSDSDSITWLPLH 322

Query: 290 KKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDDSFVHL 330
           KKVV P+ +++ FN R RSAKLRA ++T +  +E     HL
Sbjct: 323 KKVVSPSDDEIFFNPRCRSAKLRAVVKTNKEVLELCQLTHL 363


>gi|28571637|ref|NP_788632.1| CG14683, isoform A [Drosophila melanogaster]
 gi|62472493|ref|NP_001014615.1| CG14683, isoform B [Drosophila melanogaster]
 gi|74869026|sp|Q9VGY5|MET15_DROME RecName: Full=Probable methyltransferase-like protein 15 homolog
 gi|15291185|gb|AAK92861.1| GH10770p [Drosophila melanogaster]
 gi|28381233|gb|AAO41540.1| CG14683, isoform A [Drosophila melanogaster]
 gi|61679326|gb|AAX52945.1| CG14683, isoform B [Drosophila melanogaster]
 gi|220945126|gb|ACL85106.1| CG14683-PA [synthetic construct]
 gi|220954938|gb|ACL90012.1| CG14683-PA [synthetic construct]
          Length = 356

 Score =  314 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 122/338 (36%), Positives = 175/338 (51%), Gaps = 31/338 (9%)

Query: 11  SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDP 68
           S+I  T   HVPVL +  I  L P PG    D TFGAGG++R   +    + V ALDRDP
Sbjct: 18  SSIDVTTAPHVPVLCDTAIEYLQPVPGGTYFDMTFGAGGHTRRLLEKCPEAKVYALDRDP 77

Query: 69  FAVSCGQETMR--DYKEQFSLFQATFSQLQDYVPDKG-----VDGVVFDLGVSSMQIDCG 121
            A    ++     ++K +       FS L     + G     VDG++FD G SSMQ D  
Sbjct: 78  LAHQLARDMSESEEFKGRLIPLLGKFSDLPKLFKEHGLAKNSVDGMLFDFGCSSMQFDEA 137

Query: 122 DRGFSFQKSGPLDMRMS---CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178
            RGFS  + GPLDMRM      G++A+DV+      DL +IL + GEEK A +IA  +V 
Sbjct: 138 VRGFSISRDGPLDMRMDGGHSGGVTAADVLANVEEGDLVKILRMYGEEKAAKKIARGLVD 197

Query: 179 RRQSA-PFQTTQDLSSLIQKTVYFSKNNRI-----HPATRSFQALRIFVNNEIEELAQGL 232
            R +    +TT+ L+ +I+  +             H AT++FQA+RIFVNNE+ E+  G+
Sbjct: 198 ARNALFKIETTKQLADIIENIMDGGTRKDKLRRPAHSATKTFQAIRIFVNNELNEINYGM 257

Query: 233 RSAEKALKAGGLLIVVSFHSLEDRLVKKFFA-------------SRSGKVMAVRHMIPSN 279
             A + L+  G L+ ++FHSLED +VK+                  S         I  +
Sbjct: 258 VLANEILRVDGRLVTITFHSLEDTIVKRHINGNVLAGAANALPLKYSSHYAIDEPDILES 317

Query: 280 AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
                ++ + + V+VP  ++VA N RSRSAKLRA ++T
Sbjct: 318 LTKKSWKQLHRHVIVPDADEVARNTRSRSAKLRAAVKT 355


>gi|330794884|ref|XP_003285506.1| hypothetical protein DICPUDRAFT_29501 [Dictyostelium purpureum]
 gi|325084509|gb|EGC37935.1| hypothetical protein DICPUDRAFT_29501 [Dictyostelium purpureum]
          Length = 372

 Score =  314 bits (805), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 111/329 (33%), Positives = 184/329 (55%), Gaps = 26/329 (7%)

Query: 11  SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDP 68
           +  + +   H PV +++V+ +L+P P  V +DATFG GG+SR   +      VIA DRDP
Sbjct: 51  TKEYDSYKIHKPVFIKEVLEILDPKPNNVYIDATFGLGGHSRGILESCKDCYVIAFDRDP 110

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG-----VDGVVFDLGVSSMQIDCGDR 123
                 ++    YK++     + FS ++  + D       + G++FD GVSS QID  +R
Sbjct: 111 NVFELTKDLRTQYKDRLITIGSRFSSMKSALKDHNLENLKISGILFDYGVSSYQIDTAER 170

Query: 124 GFSFQKS--GPLDMRMS---CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178
           GFSF+K   GPLDMRM+    S +SA+D+VN  + ++L  I   LGEEK   +IAH I++
Sbjct: 171 GFSFKKELEGPLDMRMNNKNTSQLSAADIVNTFSEQELRDIFYHLGEEKHTRKIAHEILR 230

Query: 179 RRQ-SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
           +R      +TT  L  +++  + +   ++    +R F++LR++VN+E+ E+  GLR A+ 
Sbjct: 231 KRAFGEKIETTSQLVKVVECCMPYPAASK--TISRIFRSLRMYVNDELGEIKYGLREADD 288

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGK----VMAVRHMIPSNAHPAVFQSITKK-- 291
            L  G  L+ +SFHS+EDR+VK++  +   K     +   ++I      +     +K   
Sbjct: 289 ILSPGSPLLAISFHSMEDRIVKQYLNNNGLKSDYDTINNNNVIKYELPKS-----SKHTS 343

Query: 292 VVVPTQEDVAFNRRSRSAKLRAGMRTVER 320
            + P+ E++ +N RS+SA LR  +RT  +
Sbjct: 344 PIFPSDEELEWNPRSKSAILRWAVRTQNK 372


>gi|195953230|ref|YP_002121520.1| S-adenosyl-methyltransferase MraW [Hydrogenobaculum sp. Y04AAS1]
 gi|263456148|sp|B4U8T1|RSMH_HYDS0 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|195932842|gb|ACG57542.1| S-adenosyl-methyltransferase MraW [Hydrogenobaculum sp. Y04AAS1]
          Length = 296

 Score =  314 bits (805), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 104/303 (34%), Positives = 170/303 (56%), Gaps = 28/303 (9%)

Query: 19  DHVPVLLEKVIALL-NPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQ 75
            H  VLL++V   L NP P K+ +DAT G GG++++  +    + +I +D+D  A+   +
Sbjct: 1   MHKSVLLKEVTDFLSNPCP-KIHIDATLGLGGHAKALLEVCKDTFLIGIDKDENAIEIAK 59

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E ++ +   F  +  +F      + ++G    D ++FD GVSS+Q+D  + GFSFQ+   
Sbjct: 60  EKLKGFNAVF--YHGSFKDFDIVLKEEGLLYFDSILFDFGVSSLQLDEEE-GFSFQREDF 116

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM      +A  V+N    K+L  I    GEE+ + +IA +IV++R+  P +TT++L
Sbjct: 117 LDMRMDKRQQKTAYIVINTYKEKELADIFYKYGEERLSKKIARSIVEKRKKKPIETTKEL 176

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             ++     + K ++I+PAT+ FQALRI VN+E+E++   L       K G     +SFH
Sbjct: 177 VDIVSSCYPY-KYSKINPATKVFQALRIEVNSELEDIKIALSKLLDFAKEGSKFAFISFH 235

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDRLVK+F  + + K                 +  +KK + P+ E++ +N+R+RSAKL
Sbjct: 236 SLEDRLVKEFIKNNADK----------------LKVCSKKPITPSDEELLYNKRARSAKL 279

Query: 312 RAG 314
           R  
Sbjct: 280 RCA 282


>gi|330836624|ref|YP_004411265.1| Ribosomal RNA small subunit methyltransferase H [Spirochaeta
           coccoides DSM 17374]
 gi|329748527|gb|AEC01883.1| Ribosomal RNA small subunit methyltransferase H [Spirochaeta
           coccoides DSM 17374]
          Length = 314

 Score =  314 bits (805), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 104/303 (34%), Positives = 156/303 (51%), Gaps = 7/303 (2%)

Query: 20  HVPVLLEKVIALLNPAPG--KVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQ 75
           H PVL E+V+  L        +++D T G GG++    +   N+  I LDRD       +
Sbjct: 6   HQPVLAEEVLDALVIPLDVPALMIDCTTGEGGHTGMMLERHPNLTVIGLDRDEAIQKKAR 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
             +  Y  +F      F            D ++FDLG+S        RGFSFQK  PLDM
Sbjct: 66  TRLESYGGRFIPTLTWFDDFLTTYEGTAPDAILFDLGISMFHYVESGRGFSFQKPEPLDM 125

Query: 136 RMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           R+     IS +D+VN    + L  I+   GEE+ + +IA AI + R       +  L+ L
Sbjct: 126 RLDAQDAISVADIVNTYEERRLADIIYAYGEERHSRKIAAAICRARAEERLTYSDRLAEL 185

Query: 195 IQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           I+  V  + +  RIHPAT++FQALRI VN+E++ +   + +A K ++ GG + V++FHSL
Sbjct: 186 IKSAVPPAYRFGRIHPATKTFQALRIEVNHELDRIKPAIEAALKIIRPGGRIAVITFHSL 245

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           EDR VK  F   +      R    ++  P  F  ITKK +VP++++   N  +RSAKLR 
Sbjct: 246 EDRKVKWIFKEAAWDTEETREKKTASTFPP-FAIITKKPIVPSEDECRRNPAARSAKLRV 304

Query: 314 GMR 316
             +
Sbjct: 305 IEK 307


>gi|149193782|ref|ZP_01870880.1| S-adenosyl-methyltransferase MraW [Caminibacter mediatlanticus
           TB-2]
 gi|149135735|gb|EDM24213.1| S-adenosyl-methyltransferase MraW [Caminibacter mediatlanticus
           TB-2]
          Length = 302

 Score =  314 bits (805), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 92/299 (30%), Positives = 152/299 (50%), Gaps = 13/299 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76
            HVPVLL + + L         +D T G GG+S +  +   +  +I +D+D  A++  + 
Sbjct: 4   PHVPVLLNETVNLYKNIKKGYFIDCTLGFGGHSEAILEKYPHIKLIGIDQDIDALNFAKN 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
            ++ Y  +        S+    +    + G++ D+GVSS Q+D  +RGF+F  +  LDMR
Sbjct: 64  RLKKYANRVEFINKRASEALSELKGLNIAGILADIGVSSFQLDNKERGFTFDSN-TLDMR 122

Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M+ +   SA DV+N  +   L  I     E ++  +IA  I+K R   P  + ++LS ++
Sbjct: 123 MNKNQEFSAKDVINFYDKNSLEEIFKKYAESRKYKKIADLIIKNR---PINSNKELSEIL 179

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
            +    +K          FQA+RI VNNE+ EL + L  +E     G +L +++FHSLED
Sbjct: 180 MQAGIKNK----KDLAPIFQAIRIEVNNELNELEKILDLSEDIAIDGTILGIITFHSLED 235

Query: 256 RLVKKFFASRSGKVMAVRHMIPSN--AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           R+VK  F   + + +     I      +    + +TKK +  + E++  N RSRSAKLR
Sbjct: 236 RIVKNRFKEWAKRCICPDEAIKCECGGNNQKGKILTKKPITASNEEIKKNPRSRSAKLR 294


>gi|255348632|ref|ZP_05380639.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis 70]
 gi|255503172|ref|ZP_05381562.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis 70s]
 gi|255506850|ref|ZP_05382489.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis D(s)2923]
 gi|289525311|emb|CBJ14787.1| S-adenosyl-L-methionine-dependent methyltransferase [Chlamydia
           trachomatis Sweden2]
 gi|296434861|gb|ADH17039.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis E/150]
 gi|296438581|gb|ADH20734.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis E/11023]
          Length = 300

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 111/317 (35%), Positives = 167/317 (52%), Gaps = 25/317 (7%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI---ALD 65
           M+ +I      H+PVL+++ ++L       V  D T GAGG++ +F     ++      D
Sbjct: 1   MTDSI-----PHIPVLVKESLSLFRDRNPVVFCDVTVGAGGHAEAFLTEFPSIERYDGSD 55

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125
           RD  A++  +  +  +K++  L  A+F ++     D   DGV+ DLGVSSMQ++  +RGF
Sbjct: 56  RDLSALALSENRLLPFKDRVRLRHASFEEVDTLTSDGTYDGVLADLGVSSMQLNNLERGF 115

Query: 126 SFQ-KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           SFQ +  PLDMRM  S G++AS+V+N    +++  I    GEE      A A+V  R+  
Sbjct: 116 SFQGEDHPLDMRMDTSRGMTASEVLNSLREEEIGEIFRNYGEESLWRSAAAAVVHFRKKK 175

Query: 184 PFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
              T +DL           +   +IHP T  FQALRI+VN E  +L   L SA + L+ G
Sbjct: 176 KILTVKDLKDATSGVFPSYRLRKKIHPLTLIFQALRIYVNQEGAQLKVLLDSAFRWLRPG 235

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G L V+SF SL+DR VK  F     + +               + +TKKV++P+ E+   
Sbjct: 236 GRLAVISFCSLDDRPVKWAFREAEARGLG--------------KILTKKVIMPSYEETRM 281

Query: 303 NRRSRSAKLRAGMRTVE 319
           N RSRSAKLR   ++ E
Sbjct: 282 NPRSRSAKLRCFEKSFE 298


>gi|32266778|ref|NP_860810.1| S-adenosyl-methyltransferase MraW [Helicobacter hepaticus ATCC
           51449]
 gi|42559453|sp|Q7VGP1|RSMH_HELHP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|32262830|gb|AAP77876.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
          Length = 317

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 112/310 (36%), Positives = 172/310 (55%), Gaps = 16/310 (5%)

Query: 19  DHVPVLLEKVIALLNP-APGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQ 75
            H  VL  ++I  L+      +++D T G GG++    +   N  V A D+D +A++  +
Sbjct: 2   KHYSVLKNEMIQALDCLKEDSILIDCTLGFGGHTIGALQAYPNIEVYAFDKDIYALNLAK 61

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E ++ Y +        FSQ  D VP+     V G++ D+GVSSMQ+D   RGFSF  S  
Sbjct: 62  ERLKPYLQNIHFCHNAFSQFLDIVPNVVLPRVRGIIADIGVSSMQLDETQRGFSFVSS-T 120

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM   + ++A+ V+N  +   L  I  I GE +Q+ ++A  I   R+  PF +  +L
Sbjct: 121 LDMRMDTRADLNATKVINTYSPIRLEEIFRIYGEVRQSKKLAEIIAYERKKKPFSSCLEL 180

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG----GLLIV 247
           S+LI++  +F +   IHPAT +FQALRI VN+E+ EL + L + E A   G      + +
Sbjct: 181 STLIEQ--HFPRVGGIHPATLAFQALRIEVNDELGELKRLLHNIELAFDEGKIASCRVGI 238

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRH--MIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           +SFHSLEDR++K+ F   S   +            + A  Q +TKK ++PT +++A N+R
Sbjct: 239 ISFHSLEDRIIKQCFKQWSKSCICAEESLRCECGNNHAKGQILTKKPIIPTPQEIAQNKR 298

Query: 306 SRSAKLRAGM 315
           SRSAKLR   
Sbjct: 299 SRSAKLRIFE 308


>gi|189485180|ref|YP_001956121.1| SAM-dependent methyltransferase [uncultured Termite group 1
           bacterium phylotype Rs-D17]
 gi|263504473|sp|B1GZH8|RSMH_UNCTG RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|170287139|dbj|BAG13660.1| SAM-dependent methyltransferase [uncultured Termite group 1
           bacterium phylotype Rs-D17]
          Length = 291

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 109/304 (35%), Positives = 164/304 (53%), Gaps = 23/304 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQET 77
           H+PV+  +    L   PG + +D TFG GG++        ++  +A D D  +     E 
Sbjct: 3   HIPVMPLETSRYLIGKPGGLYVDCTFGGGGHALYLLDKFKDIKIVAFDWDEDSSKRFIER 62

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
            +++  + +  +  F  ++  +       VDG++ D+GVSS Q    DRGFSF   G LD
Sbjct: 63  EKEFSGRVTFIRDNFKNVKKALSALNISKVDGILADIGVSSKQFGDLDRGFSFNS-GTLD 121

Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM   +G  A +VVN  + +DL  I    GEE+++ +IA AI+ RR+     T  +L +
Sbjct: 122 MRMDKRNGFEAKEVVNSYSYEDLADIFYKYGEERKSRQIASAILLRRKRGIINTASELQT 181

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           +I          RI+PAT+ FQALRIFVN+E+E LA  L  A + L AGG  +++SFHSL
Sbjct: 182 VICSV--KRPEGRINPATKVFQALRIFVNSELENLAVLLSDAPELLNAGGRTVIISFHSL 239

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           EDR+VK+ F   S   +              ++ +TKKVV   +E+V  N  SRSA++RA
Sbjct: 240 EDRIVKQNFKRNSECGI--------------YKILTKKVVTALKEEVKINPGSRSARIRA 285

Query: 314 GMRT 317
             +T
Sbjct: 286 AEKT 289


>gi|237802695|ref|YP_002887889.1| S-adenosyl-methyltransferase MraW [Chlamydia trachomatis
           B/Jali20/OT]
 gi|231273929|emb|CAX10721.1| S-adenosyl-L-methionine-dependent methyltransferase [Chlamydia
           trachomatis B/Jali20/OT]
          Length = 300

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 110/317 (34%), Positives = 167/317 (52%), Gaps = 25/317 (7%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI---ALD 65
           M+ +I      H+PVL+++ ++L       V  D T GAGG++ +F     ++      D
Sbjct: 1   MTDSI-----PHIPVLVKESLSLFRDRNPVVFCDVTVGAGGHAEAFLTEFPSIERYDGSD 55

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125
           RD  A++  +  +  +K++  L  A+F ++     D   DGV+ DLGVSSMQ++  +RGF
Sbjct: 56  RDLSALALSENRLLPFKDRVRLRHASFEEVDTLTSDGTYDGVLADLGVSSMQLNNLERGF 115

Query: 126 SFQ-KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           SFQ +  PLDMRM  S G++AS+V+N    +++  I    GEE      A A+V  R+  
Sbjct: 116 SFQGEDHPLDMRMDTSRGMTASEVLNSLREEEIGEIFRNYGEEPLWRSAAAAVVHFRKKK 175

Query: 184 PFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
              T +DL           +   +IHP T  FQALRI+VN E  +L   L S+ + L+ G
Sbjct: 176 KILTVKDLKDATSGVFPSYRLRKKIHPLTLIFQALRIYVNQEGAQLKVLLDSSFRWLRPG 235

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G L V+SF SL+DR VK  F     + +               + +TKKV++P+ E+   
Sbjct: 236 GRLAVISFCSLDDRPVKWAFREAEARGLG--------------KILTKKVIMPSYEETRM 281

Query: 303 NRRSRSAKLRAGMRTVE 319
           N RSRSAKLR   ++ E
Sbjct: 282 NPRSRSAKLRCFEKSFE 298


>gi|317506606|ref|ZP_07964398.1| MraW methylase [Segniliparus rugosus ATCC BAA-974]
 gi|316255115|gb|EFV14393.1| MraW methylase [Segniliparus rugosus ATCC BAA-974]
          Length = 316

 Score =  313 bits (803), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 107/312 (34%), Positives = 171/312 (54%), Gaps = 8/312 (2%)

Query: 24  LLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETM 78
           +L +V++LL PA   P  V++D T G GG++R+  +      V+ +DRD  A+   +E +
Sbjct: 1   MLNRVVSLLAPAFDAPDPVLVDGTLGLGGHTRALLERFPTLRVVGMDRDAKAIEVAKERL 60

Query: 79  RDYKEQFSLFQATFSQLQDYVPD-KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
               ++     A + +++  + D + V G + DLGVSSMQ+D  +RGF++ K  PLDMRM
Sbjct: 61  GGLADRVRFVHARYDEVERALGDGENVQGYLLDLGVSSMQLDQAERGFAYSKDAPLDMRM 120

Query: 138 SCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
             S  ++A +V+     K+L R+L   GEE+ A+RIA  IV+RR + P  ++ +L  LI 
Sbjct: 121 DTSAELTAHEVLATYGEKELARVLRTYGEERFAARIAAEIVRRRATEPLASSAELVRLID 180

Query: 197 KTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
             +    K    HPA R+FQALR+ VN+E+  L   L  A  AL   G ++V+++ SLED
Sbjct: 181 DVIPAKAKRTGGHPAKRTFQALRVEVNDELGSLRAVLPKALAALAPQGRIVVLAYQSLED 240

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           R+VK  FA  +     +   +      A F S+T+   +  +E+ + N R+ S +LRA  
Sbjct: 241 RIVKDEFARATTSRTPIGLPVELPGFEAEFVSLTRGAELAGEEETSENPRAASVRLRAVE 300

Query: 316 RTVERSIEDDSF 327
           R      E+   
Sbjct: 301 RVSGNRGEEGGS 312


>gi|315655245|ref|ZP_07908146.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Mobiluncus curtisii ATCC 51333]
 gi|315490500|gb|EFU80124.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Mobiluncus curtisii ATCC 51333]
          Length = 378

 Score =  313 bits (803), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 118/357 (33%), Positives = 183/357 (51%), Gaps = 36/357 (10%)

Query: 20  HVPVLLEKVIALLNPA--------------------PGKVILDATFGAGGYSRSFCKMGS 59
           H PVL E    LL PA                     G V++DAT G GG+S    +   
Sbjct: 8   HQPVLAEVCADLLAPALTPASESVNPLSSTADFHNVQGPVLVDATLGMGGHSAYLLERHP 67

Query: 60  --NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVS 114
              +I +DRDP A       + D+  + S+   T+ +L D +   G   VDG++ DLGVS
Sbjct: 68  QLRIIGIDRDPQARDLAASRLSDFANRLSIVGTTYGELDDVLAQHGLRQVDGILADLGVS 127

Query: 115 SMQIDCGDRGFSFQK-SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRI 172
           S+Q+D  +RGF++     PLDMRM+ S G +A+D +N A  +++  +L   GEEK +  +
Sbjct: 128 SLQLDEAERGFAYAHPEAPLDMRMNQSSGFTAADFLNLAQAEEIAAVLHTYGEEKFSWPL 187

Query: 173 AHAIVKRRQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQG 231
           A AIVK RQ+ P Q +  L  +I+ T+   ++    +PA R+FQALR+ VN+E+ +L + 
Sbjct: 188 AKAIVKARQNQPLQVSGQLVQIIRDTIPAPARRTGGNPAKRTFQALRVAVNDELGDLERF 247

Query: 232 LRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKK 291
           L  A  +++ GG ++V S+ SLEDRLVK+ FA+           +         + +T  
Sbjct: 248 LTKALASVRVGGRIVVESYQSLEDRLVKRAFAAGIHPAAPKGLPVLPEQAQPWLRDLTHG 307

Query: 292 VVVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDDSFVHL--------PRLPTLSQFR 340
             +  + +VA N R+ S +LRA ++T E   E  +   +         R PTL + R
Sbjct: 308 SRLADESEVAQNPRAASLRLRAVVKTREPHPETRAGNLVKTKPKPAEKRFPTLMKLR 364


>gi|302770288|ref|XP_002968563.1| hypothetical protein SELMODRAFT_89216 [Selaginella moellendorffii]
 gi|300164207|gb|EFJ30817.1| hypothetical protein SELMODRAFT_89216 [Selaginella moellendorffii]
          Length = 373

 Score =  313 bits (803), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 104/315 (33%), Positives = 158/315 (50%), Gaps = 26/315 (8%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCGQ 75
            H PVL+ + +        K  LD T GAGG++    +    +   + +D DP A+   +
Sbjct: 65  PHTPVLVRQFLEHFEGRSVKTFLDCTVGAGGHAFEIIQAHPELETFVGMDVDPCALKLAR 124

Query: 76  ETMRDYKE---QFSLFQATFSQLQD-------YVPDKGVDGVVFDLGVSSMQIDCGDRGF 125
           + + D      +  LF A F  ++         + ++G DG++ DLG+SSMQ+D  +RGF
Sbjct: 125 QRLSDLSGSMAKVDLFHANFKNMKKDLKERNPELLERGFDGILLDLGLSSMQVDAPERGF 184

Query: 126 SFQKSGPLDMRMSCS---GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           S+   GPLDMRM  S   G++A  + N  +  ++ RIL   GEE +   +A  IV  R +
Sbjct: 185 SYYLDGPLDMRMDSSDVLGLTAEAICNNWSAAEIGRILREYGEEMRWKFLASRIVDARLN 244

Query: 183 APFQTTQDLSSLIQ-KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
              +TT+DL+S++  +          HPA R+FQALRI VN+E++ L   +  A   L  
Sbjct: 245 GGIKTTKDLASVVGGRFTSGRFKRARHPAARTFQALRIAVNDELKSLRSAIGQASSCLAP 304

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           GG L V+SFHSLEDR+VK  F   S         +  +     F  +T   +     ++ 
Sbjct: 305 GGRLAVISFHSLEDRIVKYQFKELS---------LVFDKVDLAFMLLTTSPITADAAEIE 355

Query: 302 FNRRSRSAKLRAGMR 316
            N R RSAK+R   R
Sbjct: 356 KNSRCRSAKMRVIQR 370


>gi|171057205|ref|YP_001789554.1| S-adenosyl-methyltransferase MraW [Leptothrix cholodnii SP-6]
 gi|263456313|sp|B1XY20|RSMH_LEPCP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|170774650|gb|ACB32789.1| S-adenosyl-methyltransferase MraW [Leptothrix cholodnii SP-6]
          Length = 325

 Score =  313 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 122/307 (39%), Positives = 179/307 (58%), Gaps = 13/307 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H  VLL + +  L   P  V LD T+G GG+SR   +       +IA+DRDP A++  + 
Sbjct: 11  HRTVLLHEAVDALVQRPAGVYLDGTYGRGGHSRLILERLDPAGRLIAIDRDPEALANARS 70

Query: 77  T-MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              R    +FS+  A F++ +  + + GV   DG++ DLG+SS QID  +RGFSF+  GP
Sbjct: 71  GETRIDDPRFSIHHARFAEFESVLDEAGVGQLDGLLLDLGISSPQIDNPERGFSFRFDGP 130

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQTTQD 190
           LDMRM  + G SA++ +  A  + +  ++   GEE+ A  +A AIV RR+   P Q T +
Sbjct: 131 LDMRMDPTRGQSAAEFLASAPFERIKEVVRDYGEERFADAVAKAIVARREEGRPVQRTAE 190

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L++L+   V   +  +  PATR+FQALRI VN E+EE+ QGL  A   L  GG L V++F
Sbjct: 191 LAALVAGAVKTRERGQ-DPATRTFQALRILVNAELEEVEQGLNRALARLAPGGRLAVIAF 249

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDR+VK F A  + +V   R M  +   P + +++ +  + P + +VA N R+RSA 
Sbjct: 250 HSLEDRIVKTFIARHAREVY-DRRMPYATPAPLLMRAVAR--IKPGEAEVAANPRARSAI 306

Query: 311 LRAGMRT 317
           LR   RT
Sbjct: 307 LRVAERT 313


>gi|89902202|ref|YP_524673.1| S-adenosyl-methyltransferase MraW [Rhodoferax ferrireducens T118]
 gi|122996777|sp|Q21SW1|RSMH_RHOFD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|89346939|gb|ABD71142.1| methyltransferase [Rhodoferax ferrireducens T118]
          Length = 309

 Score =  313 bits (802), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 119/314 (37%), Positives = 170/314 (54%), Gaps = 23/314 (7%)

Query: 20  HVPVLLEKVIALLNPAPG----------KVILDATFGAGGYSRSFCKM---GSNVIALDR 66
           H  VLL + +  L   P           +V +DATFG GG+SR           +IA D+
Sbjct: 3   HTTVLLNEAVDALFCNPDATADASATGAQVYVDATFGRGGHSRLILSRMTPTDRLIAFDK 62

Query: 67  DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126
           D  A+         +  +FS+    FS L + +P   V GV+ DLG+SS QID   RGFS
Sbjct: 63  DAEALVEAGNI---HDSRFSIRHQGFSHLDE-LPPASVAGVLLDLGISSPQIDNPARGFS 118

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA-P 184
           F+  GPLDMRM  + GIS +  +  A  + +  ++   GEE+ A  IA AIV RRQ   P
Sbjct: 119 FRFEGPLDMRMDTTRGISVAQWLANAETEKIAEVIRDYGEERFAGPIAKAIVARRQERGP 178

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
             +T +L+ L+  TV   +  + +PATR+FQA RIF+N E+EEL Q L ++   L  GG 
Sbjct: 179 ISSTTELAQLVADTVKTREPGQ-NPATRTFQAFRIFINAELEELQQALAASLLVLAPGGR 237

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           L+V+SFHSLEDR+VK+F A  S  V   R    +       +++ +  + P+  +V+ N 
Sbjct: 238 LVVISFHSLEDRIVKQFIAQHSRDVY-DRRAPFAPPKVMQLKALAR--LRPSAAEVSANP 294

Query: 305 RSRSAKLRAGMRTV 318
           R+RSA +R   RT 
Sbjct: 295 RARSAIMRVAQRTA 308


>gi|42524595|ref|NP_969975.1| S-adenosyl-methyltransferase [Bdellovibrio bacteriovorus HD100]
 gi|110826013|sp|P62469|RSMH_BDEBA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|39576805|emb|CAE78034.1| S-adenosyl-methyltransferase [Bdellovibrio bacteriovorus HD100]
          Length = 328

 Score =  313 bits (802), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 117/309 (37%), Positives = 171/309 (55%), Gaps = 26/309 (8%)

Query: 19  DHVPVLLEKVIALLNPAPGKV---ILDATFGAGGYSRSFCKMGSNVIA--LDRDPFAVSC 73
           +H PVLL++V+A   P   K      D TFG GG+  +       + A  +D+D  A++ 
Sbjct: 32  EHYPVLLQEVLAAFYPLRDKKELSYFDGTFGRGGHYMALKYAYPQMKATVMDQDLAAIAF 91

Query: 74  GQETM--RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            Q        K Q ++    F+Q  ++  +   D ++ DLGVSS Q+D G+RGFSF   G
Sbjct: 92  AQSRFQTEVEKGQLNVIHGNFTQFSEHNLN-NFDMMLLDLGVSSPQLDQGERGFSFYNDG 150

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM+   G++A  ++N A+  +L RI    GE  + SR+  AIV  R++  FQTT  
Sbjct: 151 PLDMRMNQQQGLTAEVLINTASEDELIRIFKEYGEVYRPSRVVRAIVNDRKTKAFQTTGA 210

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ LI++     +    HPAT+ F ALR+ VN+E+E +A+ +    +AL  GG L V+SF
Sbjct: 211 LAGLIERVD-GWQVKGHHPATKYFMALRLAVNSELEVVAEAIPKMIRALNPGGRLAVISF 269

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDR+VK  F                     + +++TKKV+VPTQE+   N RSRSAK
Sbjct: 270 HSLEDRIVKNIFRESED----------------LGRTVTKKVIVPTQEECDRNSRSRSAK 313

Query: 311 LRAGMRTVE 319
           LR   R+ +
Sbjct: 314 LRIFERSAQ 322


>gi|315656834|ref|ZP_07909721.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Mobiluncus curtisii subsp. holmesii ATCC 35242]
 gi|315492789|gb|EFU82393.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Mobiluncus curtisii subsp. holmesii ATCC 35242]
          Length = 378

 Score =  313 bits (802), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 118/357 (33%), Positives = 182/357 (50%), Gaps = 36/357 (10%)

Query: 20  HVPVLLEKVIALLNPA--------------------PGKVILDATFGAGGYSRSFCKMGS 59
           H PVL      LL PA                     G V++DAT G GG+S    +   
Sbjct: 8   HQPVLAAVCADLLAPALTPTSEAVTPLSSTADFHNVQGPVLVDATLGMGGHSAYLLESHP 67

Query: 60  --NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVS 114
              +I +DRDP A       + D+  + S+   T+ +L D +   G   VDG++ DLGVS
Sbjct: 68  QLRIIGIDRDPQARDLAATRLSDFANRLSIVGTTYGELDDVLAQHGLSQVDGILADLGVS 127

Query: 115 SMQIDCGDRGFSFQK-SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRI 172
           S+Q+D  +RGF++     PLDMRM+ S G +A+D +N A V+++  +L   GEEK +  +
Sbjct: 128 SLQLDEAERGFAYAHPEAPLDMRMNQSSGFTAADFLNLAEVEEIAAVLHTYGEEKFSWPL 187

Query: 173 AHAIVKRRQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQG 231
           A AIVK RQ+ P Q +  L  +I+ T+   ++    +PA R+FQALR+ VN+E+ +L + 
Sbjct: 188 AKAIVKARQNQPLQVSGQLVQIIRDTIPAPARRTGGNPAKRTFQALRVAVNDELGDLERF 247

Query: 232 LRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKK 291
           L  A  +++ GG ++V S+ SLEDRLVK+ FA+           +         + +T  
Sbjct: 248 LTKALASVRVGGRIVVESYQSLEDRLVKRAFAAGIHPAAPKGLPVLPEQAQPWLRDLTHG 307

Query: 292 VVVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDDSFVHLP--------RLPTLSQFR 340
             +  + +VA N R+ S +LRA  +T E   E  +   +         R PTL + R
Sbjct: 308 SRLADESEVAQNPRAASLRLRAVEKTREPHPETRAGNLVRTKPKPAEKRFPTLMKLR 364


>gi|269115003|ref|YP_003302766.1| S-adenosyl-methyltransferase mraW [Mycoplasma hominis]
 gi|268322628|emb|CAX37363.1| S-adenosyl-methyltransferase mraW [Mycoplasma hominis ATCC 23114]
          Length = 300

 Score =  312 bits (801), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 97/304 (31%), Positives = 165/304 (54%), Gaps = 14/304 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76
           +H+PVLL +VI  L+  P  + +D T G GG+S+   K      +I  D+D  A++  +E
Sbjct: 2   EHIPVLLNEVIEQLSIKPDGIYVDLTLGRGGHSQEILKRLTTGKLICFDKDIQAINESRE 61

Query: 77  TMRDYKEQFSLFQATFSQL---QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +    + F L ++ F  +      +    VDG++ DLGVSS Q+D  +RGFS+  +  L
Sbjct: 62  KLIKISQNFILIKSDFRNITCELKKLNIDKVDGILADLGVSSPQLDDPNRGFSYSINSDL 121

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM   + ++A +++N A  K++  IL    + K ++ IA AIVK R   P   +  L+
Sbjct: 122 DMRMDLDNTLTAKEIINNATEKEIIDILQSNADVKLSNLIAKAIVKNR---PISDSFTLN 178

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I+ ++      + +P+   FQA RI VN+E+  L++ L      LK  G + +++FHS
Sbjct: 179 QIIKDSLPAKIVRQKNPSKAVFQAFRIAVNDELNALSEMLSQLPNLLKKDGKIAIITFHS 238

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
            ED +VKKF+ + +     ++ ++    H        +KV+ P+ ++   N+RSRSAKLR
Sbjct: 239 KEDVIVKKFYQNLNYFDPKLKKILIVETHKW-----HQKVIFPSSKEEEINKRSRSAKLR 293

Query: 313 AGMR 316
              +
Sbjct: 294 VITK 297


>gi|15835162|ref|NP_296921.1| S-adenosyl-methyltransferase MraW [Chlamydia muridarum Nigg]
 gi|270285334|ref|ZP_06194728.1| S-adenosyl-methyltransferase MraW [Chlamydia muridarum Nigg]
 gi|270289350|ref|ZP_06195652.1| S-adenosyl-methyltransferase MraW [Chlamydia muridarum Weiss]
 gi|301336731|ref|ZP_07224933.1| S-adenosyl-methyltransferase MraW [Chlamydia muridarum MopnTet14]
 gi|20139249|sp|Q9PKC2|RSMH_CHLMU RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|7190584|gb|AAF39384.1| conserved hypothetical protein [Chlamydia muridarum Nigg]
          Length = 302

 Score =  312 bits (801), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 113/321 (35%), Positives = 169/321 (52%), Gaps = 25/321 (7%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI---ALD 65
           M+ +I      H+PVL+++ ++L          D T GAGG++ +F     ++      D
Sbjct: 1   MTDSI-----PHIPVLVKESLSLFQDQHPTTFCDVTVGAGGHAEAFLTSFPSIEHYDGSD 55

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125
           RD  A++  ++ +  +K +  L  A+F ++    PD   DGV+ DLGVSSMQ+   +RGF
Sbjct: 56  RDLSALALSEKRLLPFKGRVCLRHASFDEVNALTPDGMYDGVLADLGVSSMQLTDLERGF 115

Query: 126 SFQ-KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           SFQ +  PLDMRM  S GI+AS+V+N    +++  I    GEE      A+A+V  R+  
Sbjct: 116 SFQGEDHPLDMRMDTSRGITASEVLNSLREEEIGEIFRKYGEEPLWRSAANAVVHFRKKK 175

Query: 184 PFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
              T +DL           +   +IHP T  FQALRI+VN E  +L   L SA + L+ G
Sbjct: 176 KILTVKDLKDATSGVFPSYRLRKKIHPLTLIFQALRIYVNQEGAQLKVLLDSALRWLRPG 235

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G L ++SF SL+DR VK  F     +                 + +TKKV++PT E+   
Sbjct: 236 GRLAIISFCSLDDRPVKWAFREAEARGEG--------------RVLTKKVIMPTYEETRK 281

Query: 303 NRRSRSAKLRAGMRTVERSIE 323
           N RSRSAKLR   ++++ S E
Sbjct: 282 NPRSRSAKLRCFEKSLKISDE 302


>gi|195389917|ref|XP_002053618.1| GJ23252 [Drosophila virilis]
 gi|194151704|gb|EDW67138.1| GJ23252 [Drosophila virilis]
          Length = 364

 Score =  312 bits (801), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 123/333 (36%), Positives = 174/333 (52%), Gaps = 31/333 (9%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSC 73
               HVPVL +  I  L P      +D TFGAGG++R       +  V ALDRDP A   
Sbjct: 31  PSAPHVPVLCQTAIDYLQPVASGKYIDMTFGAGGHTRRLLDSCPDTTVYALDRDPLAHEL 90

Query: 74  GQETMR--DYKEQFSLFQATFSQLQDYV-----PDKGVDGVVFDLGVSSMQIDCGDRGFS 126
            Q   +  DY  +       FS+L   +     P    DG++FD G SSMQ D   RGFS
Sbjct: 91  AQRMSQENDYAGRLVPLLGKFSELPQLLQSLDVPRHSFDGMLFDFGCSSMQFDEAARGFS 150

Query: 127 FQKSGPLDMRMSCS---GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS- 182
              +GPLDMRM C     ISA+DV+ +A   DL RIL + GEEK A +IA AIV+ R + 
Sbjct: 151 IAHNGPLDMRMDCGRSGSISAADVLARAEEADLARILRVYGEEKAAKKIARAIVEARSAL 210

Query: 183 APFQTTQDLSSLIQKTVYFSKN-----NRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
              +TT+ L+ L+   +   +         H AT++FQALRIFVNNE+ E+  G+  A++
Sbjct: 211 QRIETTRQLADLVAAVLGDGQRLDRLQRPAHAATKTFQALRIFVNNELNEINYGMLLAQE 270

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-------------PAV 284
            L+A G L+ ++FHSLED +VK+       + +A    +    H              + 
Sbjct: 271 LLRAQGRLVAITFHSLEDTIVKRHINGNVIEGVANPLPLKYCGHDLTHDPELLESFVQSN 330

Query: 285 FQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           ++ + + V+ P   ++A N RSRSAKLRA ++ 
Sbjct: 331 WRQLHRHVIQPDATEIARNSRSRSAKLRAAIKI 363


>gi|302788300|ref|XP_002975919.1| hypothetical protein SELMODRAFT_175313 [Selaginella moellendorffii]
 gi|300156195|gb|EFJ22824.1| hypothetical protein SELMODRAFT_175313 [Selaginella moellendorffii]
          Length = 373

 Score =  312 bits (801), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 104/315 (33%), Positives = 158/315 (50%), Gaps = 26/315 (8%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCGQ 75
            H PVL+ + +        K  LD T GAGG++    +    +   + +D DP A+   +
Sbjct: 65  PHTPVLVRQFLEHFEGRSVKTFLDCTVGAGGHAFEIIQAHPELETFVGMDVDPCALKLAR 124

Query: 76  ETMRDYKE---QFSLFQATFSQLQD-------YVPDKGVDGVVFDLGVSSMQIDCGDRGF 125
           + + D      +  LF A F  ++         + ++G DG++ DLG+SSMQ+D  +RGF
Sbjct: 125 QRLSDLSGSMAKVDLFHANFKNMKKDLKERNPELLERGFDGILLDLGLSSMQVDAPERGF 184

Query: 126 SFQKSGPLDMRMSCS---GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
           S+   GPLDMRM  S   G++A  + N  +  ++ RIL   GEE +   +A  IV  R +
Sbjct: 185 SYYLDGPLDMRMDSSDVLGLTAEAICNNWSAAEIGRILREYGEEMRWKFLASRIVDARLN 244

Query: 183 APFQTTQDLSSLIQ-KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
              +TT+DL+S++  +          HPA R+FQALRI VN+E++ L   +  A   L  
Sbjct: 245 GGIKTTKDLASVVGGRFTSGRFKRARHPAARTFQALRIAVNDELKSLRSAIGHASSCLAP 304

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           GG L V+SFHSLEDR+VK  F   S         +  +     F  +T   +     ++ 
Sbjct: 305 GGRLAVISFHSLEDRIVKYQFKELS---------LVFDKADLAFMLLTTSPITADAAEIE 355

Query: 302 FNRRSRSAKLRAGMR 316
            N R RSAK+R   R
Sbjct: 356 KNSRCRSAKMRVIQR 370


>gi|298346700|ref|YP_003719387.1| S-adenosyl-methyltransferase [Mobiluncus curtisii ATCC 43063]
 gi|304389591|ref|ZP_07371553.1| S-adenosyl-methyltransferase MraW [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|298236761|gb|ADI67893.1| S-adenosyl-methyltransferase [Mobiluncus curtisii ATCC 43063]
 gi|304327144|gb|EFL94380.1| S-adenosyl-methyltransferase MraW [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 379

 Score =  312 bits (801), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 118/357 (33%), Positives = 182/357 (50%), Gaps = 36/357 (10%)

Query: 20  HVPVLLEKVIALLNPA--------------------PGKVILDATFGAGGYSRSFCKMGS 59
           H PVL      LL PA                     G V++DAT G GG+S    +   
Sbjct: 8   HQPVLAAVCADLLAPALTPTSEAVTPLSSTADFHNVQGPVLVDATLGMGGHSAYLLESHP 67

Query: 60  --NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVS 114
              +I +DRDP A       + D+  + S+   T+ +L D +   G   VDG++ DLGVS
Sbjct: 68  QLRIIGIDRDPQARDLAATRLSDFANRLSIVGTTYGELDDVLAQHGLSQVDGILADLGVS 127

Query: 115 SMQIDCGDRGFSFQK-SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRI 172
           S+Q+D  +RGF++     PLDMRM+ S G +A+D +N A V+++  +L   GEEK +  +
Sbjct: 128 SLQLDEAERGFAYAHPEAPLDMRMNQSSGFTAADFLNLAEVEEIAAVLHTYGEEKFSWPL 187

Query: 173 AHAIVKRRQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQG 231
           A AIVK RQ+ P Q +  L  +I+ T+   ++    +PA R+FQALR+ VN+E+ +L + 
Sbjct: 188 AKAIVKARQNQPLQVSGQLVQIIRDTIPAPARRTGGNPAKRTFQALRVAVNDELGDLERF 247

Query: 232 LRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKK 291
           L  A  +++ GG ++V S+ SLEDRLVK+ FA+           +         + +T  
Sbjct: 248 LTKALASVRVGGRIVVESYQSLEDRLVKRAFAAGIHPAAPKGLPVLPEQAQPWLRDLTHG 307

Query: 292 VVVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDDSFVHLP--------RLPTLSQFR 340
             +  + +VA N R+ S +LRA  +T E   E  +   +         R PTL + R
Sbjct: 308 SRLADESEVAQNPRAASLRLRAVEKTREPHPETRAGNLVRTKPKPAEKRFPTLMKLR 364


>gi|295839424|ref|ZP_06826357.1| S-adenosyl-methyltransferase [Streptomyces sp. SPB74]
 gi|295827469|gb|EFG65411.1| S-adenosyl-methyltransferase [Streptomyces sp. SPB74]
          Length = 312

 Score =  312 bits (800), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 109/289 (37%), Positives = 166/289 (57%), Gaps = 10/289 (3%)

Query: 22  PVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQE 76
           PV+L + + LL PA   PG V++D T G GG+S +         ++ALDRD  A+    E
Sbjct: 2   PVMLRRCLDLLGPALAEPGAVVVDCTLGLGGHSEALLSTFPAARLVALDRDKEALRLAGE 61

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  + E+  L  A + +L D +   G   V GV+FDLGVSSMQ+D   RGF++ +  PL
Sbjct: 62  RLAPFGERALLAHAVYDELPDVLERLGIPRVQGVLFDLGVSSMQLDEAGRGFAYAQDAPL 121

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  S G+SA++V+N     +L RIL   GEEKQA RI  A+V+ R+  PF  +  L 
Sbjct: 122 DMRMDQSAGMSAAEVLNTYPPGELVRILRTYGEEKQARRIVSAVVREREKEPFTRSARLV 181

Query: 193 SLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            LI++ +   +K    +PA R+FQALRI VN E+  L + + +A  +L  GG + V+++H
Sbjct: 182 ELIREALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVNSLAVGGRIAVLAYH 241

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300
           SLEDRLVK+  ++ +         +    +    + +T+   +P +E+V
Sbjct: 242 SLEDRLVKQVLSTGATGTAPPGLPVVPERYQPRLKLLTRGAELPAEEEV 290


>gi|289640760|ref|ZP_06472931.1| S-adenosyl-methyltransferase MraW [Frankia symbiont of Datisca
           glomerata]
 gi|289509336|gb|EFD30264.1| S-adenosyl-methyltransferase MraW [Frankia symbiont of Datisca
           glomerata]
          Length = 359

 Score =  312 bits (800), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 125/315 (39%), Positives = 186/315 (59%), Gaps = 10/315 (3%)

Query: 18  GDHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVS 72
             H PVL ++V+ALL P    P  V++DAT G  G++ +       + +I LDRDP A+ 
Sbjct: 21  ATHTPVLSDRVVALLAPALLRPEAVLVDATVGLAGHASALLDACPTARLIGLDRDPQALE 80

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK 129
             +  + D  ++ +L  A + QL   +   G   V GV+FDLGVSS+Q+D  +RGFS+ +
Sbjct: 81  HSRARLADRADRATLVHAVYDQLPTVLDALGLTEVHGVLFDLGVSSLQLDSDERGFSYSR 140

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM    G +A+DVVN  +  +LTRIL   GEE+ A RIA A+V  R   PF ++
Sbjct: 141 DAPLDMRMDPGRGRTAADVVNTYDADELTRILRHYGEERFARRIASAVVAERAREPFVSS 200

Query: 189 QDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
             L+ L+++T+  + + N  +PA R+FQALRI VN E+E LA+ L +A  AL  GG L+V
Sbjct: 201 ARLADLVRRTIPAATRRNGGNPAKRTFQALRIEVNGELEALARALPAALDALAVGGRLVV 260

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +++HSLEDR+VK+ FA+R    +     +         + +T+    P+ ++VA N R+ 
Sbjct: 261 LAYHSLEDRMVKRAFAARVRPDVPPDLPVIPPDAAPTMRWLTRGGETPSADEVAANPRAS 320

Query: 308 SAKLRAGMRTVERSI 322
           +AKLRA  R    S 
Sbjct: 321 AAKLRAVERIAPPSG 335


>gi|118782145|ref|XP_312082.3| AGAP002831-PA [Anopheles gambiae str. PEST]
 gi|116129429|gb|EAA07716.4| AGAP002831-PA [Anopheles gambiae str. PEST]
          Length = 384

 Score =  312 bits (800), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 122/339 (35%), Positives = 176/339 (51%), Gaps = 42/339 (12%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQET 77
           H  V+  + +    P   +V +D TFGAGG++R+  +   GS V+ALDRDP A     E 
Sbjct: 44  HRAVMATETVKFFEPQRDQVFIDMTFGAGGHTRALLEAAPGSTVVALDRDPLAHRLACEM 103

Query: 78  MRDYKEQFSLFQATFSQLQDYVP-------DKGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
              +  +       FS+L   +         +  DGV+FD G SSMQ D   RGFS    
Sbjct: 104 AAQFPGRIVPLLGRFSELPALLRTVEGLDRQRHFDGVLFDFGCSSMQFDEAARGFSISHD 163

Query: 131 GPLDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APF 185
           GPLDMRM        +SA++V+ +    DL RIL + GEEKQA +IA AIV  R +    
Sbjct: 164 GPLDMRMDRDRCPEQLSAAEVLARIQEPDLVRILKVYGEEKQAKKIARAIVNARFTVKRI 223

Query: 186 QTTQDLSSLIQKTVYFSKNNRI---------------HPATRSFQALRIFVNNEIEELAQ 230
           +TT +L++++   +   ++                  H AT++FQALRIFVNNE+ E+  
Sbjct: 224 ETTAELANIVAHCLSQGESAGGQGTYDFRQDKLRRPAHVATKTFQALRIFVNNELNEINY 283

Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH--------- 281
           G+  A+  L+ GG L+ ++FHSLED +VK+         +A R  +   +H         
Sbjct: 284 GMVLAKHLLRTGGKLVTIAFHSLEDTIVKRHLTGHVVDDVASRVPLQYVSHTLAHETEAM 343

Query: 282 ----PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
                  ++ + K V+VPT E+VA N RSRSAKLRA +R
Sbjct: 344 QEMMKPHWKQMHKHVMVPTDEEVADNPRSRSAKLRAAVR 382


>gi|71082740|ref|YP_265459.1| S-adenosyl-methyltransferase [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|91762838|ref|ZP_01264803.1| S-adenosyl-methyltransferase [Candidatus Pelagibacter ubique
           HTCC1002]
 gi|88909208|sp|Q4FPN5|RSMH_PELUB RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|71061853|gb|AAZ20856.1| S-adenosyl-methyltransferase [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|91718640|gb|EAS85290.1| S-adenosyl-methyltransferase [Candidatus Pelagibacter ubique
           HTCC1002]
          Length = 336

 Score =  312 bits (800), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 126/336 (37%), Positives = 190/336 (56%), Gaps = 8/336 (2%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRD 67
           M + I   + +H PVLL ++I+++ P  G   +D TFG GGY++       + VIALDRD
Sbjct: 1   MIATIIPDVRNHYPVLLSEIISIITPQYGGTFIDCTFGQGGYTKRILNFPETKVIALDRD 60

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDY-VPDKGVDGVVFDLGVSSMQIDCGDRGFS 126
             +    QE    ++++       FSQL +  +  + +  V+FDLG S  QI    +G S
Sbjct: 61  SESSIKAQELQNSFEDRLLFKNIKFSQLNNLKLKHENIKAVIFDLGYSLNQIKDPKKGLS 120

Query: 127 FQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           F   G L+M+M  +  SA + +NQ + K+LT+I    G+E  + RIAH IV+ R      
Sbjct: 121 FDSIGELNMKMGINEFSAKEAINQLDEKELTKIFKYFGDEADSKRIAHNIVEDRSKREI- 179

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           TT++L  +I+ +    +N + H AT+ FQALRIFVN EI EL  GL +A K +K  G++ 
Sbjct: 180 TTEELVRIIESS-KRKRNYKTHSATKIFQALRIFVNKEISELIYGLINAAKVVKKDGVIA 238

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           VV+FHSLED++VK FF S S      RHM  +     +F+S+ KK +VP+ +++  N  S
Sbjct: 239 VVTFHSLEDKIVKYFFKSLSENKSISRHMPKTEEKLNLFKSVIKKPIVPSDKEIRENPPS 298

Query: 307 RSAKLRAGMRTVE----RSIEDDSFVHLPRLPTLSQ 338
           RSAKLR  ++  +     +   D F HL  +  LS+
Sbjct: 299 RSAKLRYVIKKEDFFDFETDILDKFKHLIDIENLSK 334


>gi|319786245|ref|YP_004145720.1| S-adenosyl-methyltransferase MraW [Pseudoxanthomonas suwonensis
           11-1]
 gi|317464757|gb|ADV26489.1| S-adenosyl-methyltransferase MraW [Pseudoxanthomonas suwonensis
           11-1]
          Length = 329

 Score =  312 bits (800), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 120/317 (37%), Positives = 182/317 (57%), Gaps = 7/317 (2%)

Query: 4   KSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSN 60
           ++ +    A   T   H+PVL  +V+  L   P    LD TFG GG++R   +    G  
Sbjct: 7   RTAQPGHPADPSTPAAHLPVLFAEVLDGLRVVPEGRYLDGTFGRGGHARGVLERLGPGGR 66

Query: 61  VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDC 120
           ++ +D+DP A++  +        + S+ + +F+ +  +   + +DG++ DLGVSS Q+D 
Sbjct: 67  LLLMDKDPEAIAVAEAGFGS-DPRVSIRRGSFTGMAHWDEARDLDGILLDLGVSSPQLDV 125

Query: 121 GDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFSF K GPLDMRM   SG SA+  + +A+ +++  +L I GEEKQ+ RIA AIV  
Sbjct: 126 AERGFSFGKDGPLDMRMDPDSGESAAQWLARADEREIADVLWIYGEEKQSRRIARAIVAA 185

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
           R   P   T  L++LI   V   K +R +PATRSFQA+RI +N E+ +L  GL +A  AL
Sbjct: 186 RAQEPLTRTAQLANLIGSVVPRGK-DRSNPATRSFQAIRIHINRELADLEAGLDAALAAL 244

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
           + GG L V+SFHSLEDR+VK+F A  S    A R +  ++    V  ++    +   +E+
Sbjct: 245 RPGGRLAVISFHSLEDRMVKQFIARHSKAPPANRRLPEASVFVPVLAAL-GGAIRAGEEE 303

Query: 300 VAFNRRSRSAKLRAGMR 316
           +  N R+RSA LR   +
Sbjct: 304 LQVNVRARSAVLRVAEK 320


>gi|145588347|ref|YP_001154944.1| S-adenosyl-methyltransferase MraW [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|262824872|sp|A4SV66|RSMH_POLSQ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|145046753|gb|ABP33380.1| S-adenosyl-methyltransferase MraW [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 316

 Score =  312 bits (800), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 117/313 (37%), Positives = 187/313 (59%), Gaps = 23/313 (7%)

Query: 20  HVPVLLEKVIALL---------NPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRD 67
           H PVLL + +  L         N A   V++D TFG GG++++  K     + VI+ D+D
Sbjct: 5   HRPVLLAEAVTALISGPLIQEKNAAKKIVVIDGTFGRGGHTQALLKSLEMSARVISFDKD 64

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
             A+S  Q+       +F++   +F+ +  Y   + VDG++ DLG+SS Q+D   RGFSF
Sbjct: 65  LDAISVAQQI---QDPRFTIVHDSFAHMDQYAQAESVDGILLDLGISSPQVDEAHRGFSF 121

Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA--P 184
           ++ GPLDMRM+   G++A++ + QA  +++TR++   GEE+ A +IA AIV +R+    P
Sbjct: 122 RREGPLDMRMNTDQGLTAAEWLEQAPQEEITRVIKTYGEERFAFQIAKAIVAKREEGLSP 181

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
            +TT +L+SL+   V  ++     PATR+FQALRIF+N E+E+L  GL++A K LK G  
Sbjct: 182 -KTTTELASLVASVV-RTREAGQDPATRTFQALRIFINRELEDLELGLKAALKLLKPGAR 239

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHP-AVFQSITKKVVVPTQEDVAFN 303
           L V+SFHSLEDR+VK+FF + +   +     +     P +  + I +  V P+  +++ N
Sbjct: 240 LAVISFHSLEDRIVKQFFQAHAKVEIPRGLPVREKDLPQSALEIIGR--VKPSDLEISEN 297

Query: 304 RRSRSAKLRAGMR 316
            R+RSA +R   +
Sbjct: 298 PRARSAIMRVAEK 310


>gi|258546144|ref|ZP_05706378.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Cardiobacterium hominis ATCC 15826]
 gi|258518569|gb|EEV87428.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Cardiobacterium hominis ATCC 15826]
          Length = 305

 Score =  312 bits (800), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 114/311 (36%), Positives = 167/311 (53%), Gaps = 16/311 (5%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSC 73
           +  HV VLL + +  L      V LD TFG GG+SR+          + ALDRDP A   
Sbjct: 1   MSAHVTVLLHEAVQALAIRADGVYLDGTFGRGGHSRAMLAALGRAGRLYALDRDPQAAEA 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
                     +F   +  FS+++    D G   +DG++ DLGVSS Q+D   RGFSF K 
Sbjct: 61  A---AGIDDPRFHFARCPFSRMETAFADVGAASLDGILLDLGVSSPQLDQAARGFSFGKE 117

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQA--SRIAHAIVKRRQSAPFQT 187
           GPLDMRM   SGI+A+D +   +   L R++   G E      RIA A++  R     +T
Sbjct: 118 GPLDMRMDNESGITAADWLAATDEATLARVIRDWGGEPHTVARRIARAVIAAR--GKLRT 175

Query: 188 TQDLSSLIQKTVYFSKNN-RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T DL++++   V         HPAT++FQA+RI VN+E+ E+ +GL +A + LK+GG+L 
Sbjct: 176 TLDLAAVVADAVPRKLYKAGFHPATQTFQAIRIAVNDEVGEIERGLAAATRLLKSGGVLA 235

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V++FH LED LVK+F  +  G  +        +    + + +    V P+  +VA N RS
Sbjct: 236 VITFHGLEDALVKRFIRAHEGAPLPAEIPSAHDRVNPLLRLVPP-AVKPSAREVADNPRS 294

Query: 307 RSAKLRAGMRT 317
           RSA+LR  ++ 
Sbjct: 295 RSARLRKAVKI 305


>gi|300858822|ref|YP_003783805.1| S-adenosyl-methyltransferase [Corynebacterium pseudotuberculosis
           FRC41]
 gi|300686276|gb|ADK29198.1| S-adenosyl-methyltransferase [Corynebacterium pseudotuberculosis
           FRC41]
 gi|302206527|gb|ADL10869.1| S-adenosyl-methyltransferase MraW [Corynebacterium
           pseudotuberculosis C231]
 gi|302331082|gb|ADL21276.1| S-adenosyl-methyltransferase MraW [Corynebacterium
           pseudotuberculosis 1002]
 gi|308276769|gb|ADO26668.1| S-adenosyl-methyltransferase MraW [Corynebacterium
           pseudotuberculosis I19]
          Length = 351

 Score =  312 bits (800), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 115/331 (34%), Positives = 174/331 (52%), Gaps = 23/331 (6%)

Query: 20  HVPVLLEKVIALLN---PAPG--KVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVS 72
           HVPVL E++  L++      G   VILD T GAGG+S  F +      VI LDRD  +++
Sbjct: 19  HVPVLRERMAELISAPVIKMGTSAVILDGTLGAGGHSAFFLESFPEACVIGLDRDLHSLN 78

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDK--------------GVDGVVFDLGVSSMQI 118
             +E +  Y ++F      F      +                 G+ G +FDLGVSSMQ+
Sbjct: 79  NARERLSIYGDRFLGIHTRFDHFLPKLQQHAEAGDEIALKALRHGISGALFDLGVSSMQL 138

Query: 119 DCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177
           D  +RGF+++   PLDMRM  S GI+A+D++N  +  DL RIL + GEE+ A +IA A+V
Sbjct: 139 DQAERGFAYRVDAPLDMRMDDSKGITAADILNTYSHGDLARILKVYGEERFAGKIASAVV 198

Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236
           K R+ APF  +  L  L+  T+  + +    HPA R+FQALRI VN E+E +   L    
Sbjct: 199 KEREKAPFTHSARLVELLYATIPAATRRTGGHPAKRTFQALRIEVNKELESIENVLPVVT 258

Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296
             L  GG  + +S+ SLED++VK++F   S         +      A F+ +T+      
Sbjct: 259 GCLAKGGRAVFMSYQSLEDKIVKRYFVDISTSKSPPGLPMDLPGMEAGFKVVTRGAEKAN 318

Query: 297 QEDVAFNRRSRSAKLRAGMRTVERSIEDDSF 327
           ++++A N R+ S ++RA     E +  D+  
Sbjct: 319 EQEIAENPRAASVRVRAIESLKESTTADEHL 349


>gi|224082310|ref|XP_002306643.1| predicted protein [Populus trichocarpa]
 gi|222856092|gb|EEE93639.1| predicted protein [Populus trichocarpa]
          Length = 435

 Score =  312 bits (799), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 110/349 (31%), Positives = 166/349 (47%), Gaps = 45/349 (12%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAV 71
           H    HVPV+L +V+ + +  P +  +D T GA G+S +  K    +   I +D DP A 
Sbjct: 87  HETESHVPVMLGEVVDVFSSLPLRSFIDCTLGAAGHSSAIIKGHPELECYIGMDVDPVAH 146

Query: 72  SCGQETMRDYK-------------EQFSLFQATFSQLQD--YVPDKGVDGVVFDLGVSSM 116
           +  +  +                 + F   ++   ++ D   +   GVDG++ DLG+SSM
Sbjct: 147 AKARAHIDALLQSTRSSLKPHLLFKNFKYIKSVVGEIDDDCKLLSSGVDGILMDLGMSSM 206

Query: 117 QIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175
           Q++   RGFS   +GPLDMRM   + + A D++N     ++ RIL   GEE     +   
Sbjct: 207 QVNNPQRGFSVLANGPLDMRMDPRASVKAKDILNYWPDDEVGRILREYGEESNWRWLQKK 266

Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYFSKNNR---IHPATRSFQALRIFVNNEIEELAQGL 232
           IV+ RQ     +T +L  LIQ   + +K  R   I  ATR FQALRI VN+E+  L + L
Sbjct: 267 IVQARQQGGLHSTSELRDLIQGATHGTKGGRQGWIKTATRVFQALRIAVNDELNTLEKSL 326

Query: 233 RSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ------ 286
            +  + L  GG L V+SFHSLEDR+VK+ F            ++   A     +      
Sbjct: 327 HACFECLVPGGRLAVISFHSLEDRIVKQTFLKIIESNGGDGDVVEEEAGKRDLRKMRNDI 386

Query: 287 -----------------SITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318
                             +TK+ + P++E+   NRRSRSAKLR   +  
Sbjct: 387 DAKETWIRQMVQGQNGTILTKRPITPSEEEERLNRRSRSAKLRVIEKIR 435


>gi|227543126|ref|ZP_03973175.1| S-adenosyl-methyltransferase MraW [Corynebacterium glucuronolyticum
           ATCC 51866]
 gi|227181114|gb|EEI62086.1| S-adenosyl-methyltransferase MraW [Corynebacterium glucuronolyticum
           ATCC 51866]
          Length = 354

 Score =  312 bits (799), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 103/320 (32%), Positives = 165/320 (51%), Gaps = 20/320 (6%)

Query: 20  HVPVLLEKVIALLN-----PAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVS 72
           HVPVL ++++ LL           + +D T GAGG++           VI +DRD  A+ 
Sbjct: 31  HVPVLRDRMVELLRRGIAVDGATGIAVDGTLGAGGHTEHLLATDPNARVIGVDRDAQALK 90

Query: 73  CGQETMRDYKEQFSLFQATFSQ-----------LQDYVPDKGVDGVVFDLGVSSMQIDCG 121
                +  + ++F      F +           L       G+ G +FDLGVSSMQ+D  
Sbjct: 91  DATARLAPFGDRFVGLNVRFDEWMEAASCSSHPLCQEAAADGISGALFDLGVSSMQLDQE 150

Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGF+++   PLDMRM  S GI+A+DV+N  +  DL R+L   GEEK A +IA A+++ R
Sbjct: 151 ERGFAYKIDAPLDMRMDPSRGITAADVLNTYSHGDLARVLKTYGEEKFAGKIASAVIRER 210

Query: 181 QSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
           +  PF  +  L  L+  T+   ++ +  HPA R+FQALR+ VN E+  L Q +     AL
Sbjct: 211 EKEPFTRSGRLVELLYDTIPAPARRHGGHPAKRTFQALRVEVNQELRALEQVIPVTADAL 270

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
             GG+++ +S+ SLED++VKK  A  +         +        F  +T+     ++++
Sbjct: 271 HVGGVMVFMSYQSLEDKIVKKALARLTTSTNPPGLPVDLPGTEPHFALVTRGSEKASKKE 330

Query: 300 VAFNRRSRSAKLRAGMRTVE 319
           +  N R+ S ++RA  R + 
Sbjct: 331 IDQNPRAASVRVRAAQRVLN 350


>gi|118618804|ref|YP_907136.1| S-adenosyl-methyltransferase MraW [Mycobacterium ulcerans Agy99]
 gi|118570914|gb|ABL05665.1| methyltransferase [Mycobacterium ulcerans Agy99]
          Length = 395

 Score =  312 bits (799), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 115/316 (36%), Positives = 172/316 (54%), Gaps = 18/316 (5%)

Query: 19  DHVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDP 68
            HVPVL ++ + LL PA           V++DAT GAGG++  F        +I LDRDP
Sbjct: 64  HHVPVLAQRCVELLRPALTRHHADGSEAVLVDATIGAGGHAERFLTELPGLRLIGLDRDP 123

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSSMQIDCGD 122
            A+   +  +  + ++ +L    +  L   + + G      +DG +FDLGVSSMQ+D  +
Sbjct: 124 SALEIVRTRLARFTDRVTLVHTRYDGLASALTELGYGAAQSIDGALFDLGVSSMQLDQAE 183

Query: 123 RGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGF++ K  PLDMRM+  S +S +D++N  +   L  IL   GEE+ A RIA  I++RR 
Sbjct: 184 RGFAYSKDAPLDMRMNPQSALSGADIINTYDEAALADILHRYGEERFARRIAARIIRRRA 243

Query: 182 SAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
             PF TT +L +L+ + +  + +    HPA R+FQALRI VN+E+  L   + +A  AL 
Sbjct: 244 DRPFTTTAELVALLYEAIPAAARRTGGHPAKRTFQALRIAVNDELGSLRSAVPAAMDALA 303

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300
            GG ++V+++ SLEDR+VK+ FA        V   +    H   F+S+T         +V
Sbjct: 304 VGGRIVVMAYQSLEDRIVKRVFADAVASRTPVDLPVELPGHGPRFRSLTHGAERADAAEV 363

Query: 301 AFNRRSRSAKLRAGMR 316
             N RS   +LRA  R
Sbjct: 364 EHNPRSAPVRLRALQR 379


>gi|225429894|ref|XP_002283626.1| PREDICTED: similar to Os02g0137600 [Vitis vinifera]
          Length = 444

 Score =  311 bits (798), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 108/351 (30%), Positives = 165/351 (47%), Gaps = 51/351 (14%)

Query: 17  IGDHVPVLLEKVIA-------LLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDR 66
              HVPV+L +V+          + +P +  +D T GA G+S +  +    +   + +D 
Sbjct: 93  TATHVPVMLGEVLEVFSSFSSSSSSSPLRSFVDCTLGAAGHSSAIIQAHPELELYVGMDV 152

Query: 67  DPFAVSCGQETMRD------------YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
           DP A    Q  +R             +   F   ++   ++ + +   GVDG++ DLG+S
Sbjct: 153 DPIAHEKAQARIRSLCGDSSHLKAHTFMRNFKNIKSVLREVDEELLSSGVDGILMDLGMS 212

Query: 115 SMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIA 173
           SMQ++  +RGFS   +GPLDMRM     ++A D++N     ++ RIL   GEE     + 
Sbjct: 213 SMQVNNAERGFSVLANGPLDMRMDPQASLTAEDILNSWPDTEVGRILREYGEESNWRSLQ 272

Query: 174 HAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNR---IHPATRSFQALRIFVNNEIEELAQ 230
           + IVK R      +T +L  LI+KT   ++  R   I  ATR FQALRI VN+E++ L  
Sbjct: 273 NKIVKARLFGGLHSTGELVDLIRKTTPRTRGGRQGWIKTATRVFQALRIAVNDELKTLED 332

Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF-------------------------ASR 265
            L +  + L  GG L V+SFHSLEDR+VK+ F                          + 
Sbjct: 333 SLYACFECLTPGGRLAVISFHSLEDRIVKQTFLDIINSNGEDESGEGGGQEGCGKDLRNI 392

Query: 266 SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
                     I           +TK+ + P++E+   NRRSRSAKLR   +
Sbjct: 393 RNDNDEKEAWIKQMVQGWNGTILTKRPITPSEEEERLNRRSRSAKLRVIQK 443


>gi|78778559|ref|YP_396671.1| methyltransferase [Prochlorococcus marinus str. MIT 9312]
 gi|123554751|sp|Q31D10|RSMH_PROM9 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|78712058|gb|ABB49235.1| methyltransferase [Prochlorococcus marinus str. MIT 9312]
          Length = 300

 Score =  311 bits (798), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 105/316 (33%), Positives = 169/316 (53%), Gaps = 30/316 (9%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLN----PAPGKV-ILDATFGAGGYSRSFCKMGSNV--I 62
           +     +  +H  V+ ++++A L         ++  +DAT G GG+S    +  S++  I
Sbjct: 3   TDLSDSSFFNHKSVMTDEILASLEHYPLIHNNQLKGIDATLGGGGHSYHLLRKYSDLHII 62

Query: 63  ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGD 122
            LD+DPFA     + + ++K +  +  A F+  +   P + V  V+ DLGV+S QID   
Sbjct: 63  GLDQDPFARKSASKKLDEFKNRIDIRAANFADFE---PKEKVSFVIADLGVNSNQIDDPK 119

Query: 123 RGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI-VKRR 180
           RGFSFQK GPLDMRM+    + A  ++     KDL  ++   G+E+ + +IA  I +  +
Sbjct: 120 RGFSFQKDGPLDMRMNPFLEVDAEKLIETLQEKDLANLIYKYGDERLSRKIARKIKMDLK 179

Query: 181 QSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
            +  +  T++L+  I        +  +IHPATR+FQALRI VN EIE L + L+     L
Sbjct: 180 VNGKYSGTKELAYSIAGCFPPKQRYKKIHPATRTFQALRIAVNKEIEVLEKFLQIVPDWL 239

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
             GG++ ++SFHSLEDRLVK  F +                     +++TKK + P++++
Sbjct: 240 LPGGIISIISFHSLEDRLVKSSFKND-----------------QRLKNLTKKPITPSEQE 282

Query: 300 VAFNRRSRSAKLRAGM 315
           V  N+R+RS KLR   
Sbjct: 283 VEINKRARSGKLRVAQ 298


>gi|227497582|ref|ZP_03927805.1| S-adenosyl-methyltransferase [Actinomyces urogenitalis DSM 15434]
 gi|226832951|gb|EEH65334.1| S-adenosyl-methyltransferase [Actinomyces urogenitalis DSM 15434]
          Length = 363

 Score =  311 bits (798), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 113/338 (33%), Positives = 182/338 (53%), Gaps = 18/338 (5%)

Query: 20  HVPVLLEKVIALLNPA-----PGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVS 72
           H PVLL + + LL PA        V++D T G GG++    +    +  I +DRD  A++
Sbjct: 24  HTPVLLRRCLDLLAPAIEEAPAEPVMIDCTLGMGGHTEGALRRFPRLRVIGIDRDSQAIA 83

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVP------DKGVDGVVFDLGVSSMQIDCGDRGFS 126
                +  + ++F+  +AT+ +++          +  VD V+ DLGVSS+Q+D  +RGFS
Sbjct: 84  LASARLAPFGDRFTAVRATYDEVEAVAHRFSQDGEGTVDAVLMDLGVSSLQLDDVERGFS 143

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR-QSAP 184
           + +  PLDMRM  S G++A ++++ A   +L RIL   GEE+ A RI  AIV+RR    P
Sbjct: 144 YARPAPLDMRMDQSQGMTAQELLDGAEPGELVRILRAYGEERFAPRIVEAIVRRRSAGHP 203

Query: 185 FQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
             +TQ+L+ L+++ V  + +    HPA R+FQALRI VN E++ L + +  A  +L+ GG
Sbjct: 204 VSSTQELAELVRQAVPAATRRTGGHPAKRTFQALRIAVNAELDVLERAVPRALNSLRVGG 263

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            L+V S+ SLEDR+VK+  A+ +   +            A  Q++T       + ++A N
Sbjct: 264 RLVVESYQSLEDRIVKQAIAAGTRASVPDDLPFVPEGAGAYLQALTHGAERADEAELAAN 323

Query: 304 RRSRSAKLRAGMRTVERSIEDDSFVHLPRLPTLSQFRG 341
            RS   +LRA +R   R  +         L T  + +G
Sbjct: 324 PRSAPVRLRAAVRL--RPADQAPAAEPKPLTTTRRRQG 359


>gi|333027784|ref|ZP_08455848.1| putative S-adenosyl-methyltransferase [Streptomyces sp. Tu6071]
 gi|332747636|gb|EGJ78077.1| putative S-adenosyl-methyltransferase [Streptomyces sp. Tu6071]
          Length = 312

 Score =  311 bits (798), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 108/289 (37%), Positives = 166/289 (57%), Gaps = 10/289 (3%)

Query: 22  PVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQE 76
           PV+L + + LL PA   PG V++D T G GG+S +         ++ALDRD  A+    E
Sbjct: 2   PVMLRRCLDLLGPALAEPGAVVVDCTLGLGGHSEALLSTFPAARLVALDRDKEALRLAGE 61

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  + E+  L  A + +L D +   G   V G++FDLGVSSMQ+D  DRGF++ +  PL
Sbjct: 62  RLAPFGERAMLAHAVYDELPDVLDRLGIPRVQGILFDLGVSSMQLDEADRGFAYAQDAPL 121

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  + G+SA++V+N     +L RIL   GEEKQA RI  A+V+ R+  PF  +  L 
Sbjct: 122 DMRMDQTAGLSAAEVLNTYPPGELVRILRTYGEEKQARRIVSAVVREREKEPFARSARLV 181

Query: 193 SLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            LI++ +   +K    +PA R+FQALRI VN E+  L + + +A   L  GG + V+++H
Sbjct: 182 ELIREALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERAIPAAVNTLAVGGRIAVLAYH 241

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300
           SLEDRLVK+  ++ +         +    +    + +T+   +P +E+V
Sbjct: 242 SLEDRLVKQVLSTGATSTAPPGLPVVPERYQPRLKLLTRGAELPAEEEV 290


>gi|262341157|ref|YP_003284012.1| S-adenosyl-methyltransferase MraW [Blattabacterium sp. (Blattella
           germanica) str. Bge]
 gi|262272494|gb|ACY40402.1| S-adenosyl-methyltransferase MraW [Blattabacterium sp. (Blattella
           germanica) str. Bge]
          Length = 301

 Score =  311 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 109/312 (34%), Positives = 160/312 (51%), Gaps = 20/312 (6%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPF 69
             H    H PVLL++ I  L      + +DATFG GG+S +  K  +    +IALD+D  
Sbjct: 3   FQHFYYHHEPVLLKESIENLITDKNGIYVDATFGGGGHSYAILKKLNKRGILIALDQDKE 62

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFS 126
           ++           ++F LF   F  ++D +       V G++ DLG+SS+QID   RGFS
Sbjct: 63  SIKRNFIK----DKRFHLFHNNFIHIRDILNQNHIEKVSGILVDLGLSSLQIDNPTRGFS 118

Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
            Q +  LDMRM+  S  SA +V+N+ + K+L  I    GE K A +I   I+K+R     
Sbjct: 119 NQWNCTLDMRMNQESSYSAQNVINECSKKELFHIFYEYGEFKNAKKIVEKILKKRFQKNI 178

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
             T DLS+L    ++ S   R     R FQ++RI VNNEI  L   L  + K +  GG +
Sbjct: 179 TNTLDLSNLF--FIHGSFKKRKRFLARLFQSIRIEVNNEINILKDFLLESSKIILPGGRI 236

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
            V+S+HS+EDR+ K F             +   N     F+ I KKV+ P+ +++  N R
Sbjct: 237 AVISYHSIEDRITKYFLKEE-------FLIKKMNFKTLPFRMIHKKVIKPSFQEIIRNPR 289

Query: 306 SRSAKLRAGMRT 317
           SRSA+LR   + 
Sbjct: 290 SRSARLRIAEKV 301


>gi|297623827|ref|YP_003705261.1| S-adenosyl-methyltransferase MraW [Truepera radiovictrix DSM 17093]
 gi|297165007|gb|ADI14718.1| S-adenosyl-methyltransferase MraW [Truepera radiovictrix DSM 17093]
          Length = 339

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 116/291 (39%), Positives = 165/291 (56%), Gaps = 22/291 (7%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQE 76
              H PV+L + +A L   P    LD TFGAGG++R+  + G NV+ALDRDP       E
Sbjct: 7   AAPHAPVMLAECLAHLAVKPQAWYLDGTFGAGGHTRALLEAGGNVLALDRDPSVTRFLPE 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +    +  F  L  +    GV    GV+ DLGVSSMQ+D  +RGFSF+  GPL
Sbjct: 67  D-ALASGRLRFVEGNFDALDRHAAAAGVGPLAGVLLDLGVSSMQLDEAERGFSFRHPGPL 125

Query: 134 DMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           DMRM  +G+ A+D+VN A+ ++L  ++   GEE+ + RIA  IV+ R  AP  TT +L+ 
Sbjct: 126 DMRMGPTGLCAADLVNSASQEELASVIFRYGEERYSRRIARRIVEARAKAPITTTDELAE 185

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           +I +        R HPA R+FQALR+ VN+E+  L + L +AE+AL  GG L+V+++HSL
Sbjct: 186 IIARAYPPGPR-RDHPARRTFQALRVAVNDELGALERALAAAERALAPGGRLVVLTYHSL 244

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           EDR+VK+ F S                  A+   +TKK +  + E+VA N 
Sbjct: 245 EDRIVKRAFKSS-----------------ALLTPLTKKPLTASPEEVAANP 278


>gi|256832298|ref|YP_003161025.1| S-adenosyl-methyltransferase MraW [Jonesia denitrificans DSM 20603]
 gi|256685829|gb|ACV08722.1| S-adenosyl-methyltransferase MraW [Jonesia denitrificans DSM 20603]
          Length = 334

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 111/313 (35%), Positives = 176/313 (56%), Gaps = 10/313 (3%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCG 74
           H+PVL ++ + L+ PA   P  + +DAT G GG++R+  +   NVI   +DRD  A++  
Sbjct: 14  HIPVLRDRCLELMAPALNSPQALYVDATLGMGGHTRAVLEAFPNVIAIGIDRDAQALALA 73

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFSFQKSG 131
            E +  + ++F     T+  +   + + G DG   ++ DLGVSS+QID  +RGF++    
Sbjct: 74  SERLESFGQRFRAVHTTYDNIYRVIHEAGFDGAQAILMDLGVSSLQIDERERGFAYAHDA 133

Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  S  ++A+D++N  + K L  IL   GEE+ A RIA AIV+RR+  P++ + +
Sbjct: 134 PLDMRMDSSAPLTAADILNTYDEKRLATILKTYGEERFAPRIARAIVRRREERPWERSGE 193

Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  LI++++  + +    +PA R+FQALRI VN E++ LA  L +A ++L  GG L+V S
Sbjct: 194 LVDLIRESIPAAARATGGNPAKRTFQALRIEVNEELDVLAHALPAAIESLVIGGRLLVES 253

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           +HSLEDR+ K  F             I    H    +++T+      + ++  N RS S 
Sbjct: 254 YHSLEDRMTKVEFTRGLQSSAPPDLPIEPETHRPYLRALTRGAEKADENELQSNPRSASV 313

Query: 310 KLRAGMRTVERSI 322
           +LRA  R      
Sbjct: 314 RLRAIERVRPTPA 326


>gi|311063958|ref|YP_003970683.1| S-adenosyl-methyltransferase [Bifidobacterium bifidum PRL2010]
 gi|310866277|gb|ADP35646.1| MraW S-adenosyl-methyltransferase [Bifidobacterium bifidum PRL2010]
          Length = 370

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 107/307 (34%), Positives = 159/307 (51%), Gaps = 11/307 (3%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           H PVLLE+ ++L+ PA   PG + +D T G  G++ +F K      V+ +DRD  A++  
Sbjct: 8   HQPVLLEQCVSLVAPALQDPGSIAVDCTLGLAGHTIAFLKAAPQARVLGIDRDAEALAMA 67

Query: 75  QETMRDYK--EQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQK 129
            E +      ++F    A F      + D+G+D    V  DLG+SS+QID  DRGFS+  
Sbjct: 68  TERIAGEGLSDRFIPVHAAFDAFGQVLDDQGIDRVNAVFMDLGLSSLQIDETDRGFSYAH 127

Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM  S  ++A  V+ +   ++L RI    GEE+ + +IA  IV+RR   P  T+
Sbjct: 128 DAPLDMRMDVSQPLTAQCVLAEYPERELVRIFRAYGEERFSRQIAREIVRRRAQEPLTTS 187

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ L+ + V  +     +PA R FQALRI VN E+++LA  L      L   G L+V 
Sbjct: 188 AQLNRLVDEVVPQAHRPAGNPAKRVFQALRIEVNGELDKLAGTLPQIACRLAPNGRLVVE 247

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           S+HSLED+ VK F              +  +     F  +T+  V    +++A N RS S
Sbjct: 248 SYHSLEDKTVKSFMNEGLRVDAPADMPVIPDDAQPFFAPLTRGAVQAGPDEIAANPRSAS 307

Query: 309 AKLRAGM 315
            +LR   
Sbjct: 308 VRLRGVE 314


>gi|300871667|ref|YP_003786540.1| S-adenosyl-methyltransferase MraW [Brachyspira pilosicoli 95/1000]
 gi|300689368|gb|ADK32039.1| S-adenosyl-methyltransferase, MraW [Brachyspira pilosicoli 95/1000]
          Length = 297

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 100/299 (33%), Positives = 169/299 (56%), Gaps = 16/299 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H PV+L+++++ + P    + +DAT G GG++++   +   V + +RD   +   +E ++
Sbjct: 7   HTPVMLKEILSFI-PENANIAVDATLGEGGHTKAMLDLNLEVHSFERDDKILEVAKERLK 65

Query: 80  DYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
           DYK +F  +  T+ ++ + + +     VD +++DLGVS       +RGFSF+    LDMR
Sbjct: 66  DYK-KFHYYNNTYDKMLEELNENVIGNVDFMLYDLGVSMFHFKKANRGFSFKDDVKLDMR 124

Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI- 195
           +  +  SA DV+N  + K+L R+    GE   AS+IA+ IV  R+    +T+++L ++I 
Sbjct: 125 LGINNKSAYDVINSYSEKELERVFREYGEMHNASKIANIIVNERKKKSIETSKELENIIF 184

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
             T    +  +IHPAT  FQA+RI VN+E+  L + + +  K LK GG+  ++S+HSLED
Sbjct: 185 HHTDKAKRFGKIHPATLVFQAIRIEVNDELNILEKSISNISKILKNGGVAAIMSYHSLED 244

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           R+VK+F                +     +F+ +  KV+ PT E++  N  SRSAKLR  
Sbjct: 245 RIVKRFLKDNEK----------TKNKDGIFKLLNSKVITPTNEEIKLNPASRSAKLRVA 293


>gi|37522496|ref|NP_925873.1| hypothetical protein glr2927 [Gloeobacter violaceus PCC 7421]
 gi|42559444|sp|Q7NCQ1|RSMH_GLOVI RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|35213497|dbj|BAC90868.1| glr2927 [Gloeobacter violaceus PCC 7421]
          Length = 314

 Score =  310 bits (796), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 103/288 (35%), Positives = 156/288 (54%), Gaps = 27/288 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78
           H  VLLE+ I  L   PG + LDAT G GG+S +  +  S  V+ALD+D  A++  +  +
Sbjct: 30  HRSVLLEETIVGLQVHPGGLYLDATVGLGGHSEAILRTESTRVVALDQDEDALAQARLRL 89

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138
             + E+       F++ +    ++  DG+V DLGVSSMQ+D  +RGFS++   PLDMRM 
Sbjct: 90  APFGERVRFEHINFAEFEP--GEERFDGIVADLGVSSMQLDSPERGFSWRFESPLDMRMD 147

Query: 139 CSGI--SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
             G   +A+D+VN  + + L+ +    GEE+ + RIA  IV+RR   P +TT +L++++ 
Sbjct: 148 GGGEAETAADLVNTCSAEQLSDLFWRYGEERFSRRIARRIVERR---PLRTTTELAAVVA 204

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
             +   +   IHPATR FQALRI VN E+  L   L  +   L  GG L V+SFHSLEDR
Sbjct: 205 SAIPTRQP--IHPATRVFQALRIAVNGEVAALETFLERSPDWLVPGGRLAVISFHSLEDR 262

Query: 257 LVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
            VK  + +                     + +T+K +   + ++  N 
Sbjct: 263 PVKHRWRAD-----------------PRLEVLTRKTITAGEAEIQSNP 293


>gi|329944591|ref|ZP_08292731.1| S-adenosyl-methyltransferase MraW [Actinomyces sp. oral taxon 170
           str. F0386]
 gi|328530144|gb|EGF57027.1| S-adenosyl-methyltransferase MraW [Actinomyces sp. oral taxon 170
           str. F0386]
          Length = 368

 Score =  310 bits (796), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 120/351 (34%), Positives = 179/351 (50%), Gaps = 27/351 (7%)

Query: 9   MSSAIHHTI---GDHVPVLLEKVIALLNPA-------------PGKVILDATFGAGGYSR 52
           M+S         G H PVLL++ + LL PA              G V++D T G GG++ 
Sbjct: 1   MTSPQAQATDAAGRHEPVLLQRCLDLLAPAIERAAEDTSRGSAAGPVMIDCTLGMGGHTE 60

Query: 53  SFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV------ 104
           +  +      V+ +DRDP A++     +  + ++F   QAT+  +     D  V      
Sbjct: 61  AALERFPYLTVVGIDRDPEAITLASARLERFGDRFVAVQATYDAVDRVARDHSVSAEGTV 120

Query: 105 DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGIL 163
           D V+ DLGVSS+Q+D   RGFS+ +  PLDMRM  S G +A D++  A+  +LTRIL   
Sbjct: 121 DAVLMDLGVSSLQLDEASRGFSYARPAPLDMRMDQSSGPTAQDLLESADSAELTRILRTY 180

Query: 164 GEEKQASRIAHAIVKRRQSA-PFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFV 221
           GEE+ ASRIA AIV+RR++  P  +TQDL+ L+++ V   ++ +  HPA R+FQALRI V
Sbjct: 181 GEERFASRIATAIVRRREAGEPASSTQDLAELVRQAVPAPARRSGGHPAKRTFQALRIAV 240

Query: 222 NNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH 281
           N E++ L + +  A  +L+ GG L+V S+ SLEDR+VK+     +         +   A 
Sbjct: 241 NAELDVLERAVPRALNSLRVGGRLVVESYQSLEDRIVKRALNHGATSRAPQGLPVVPEAD 300

Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDDSFVHLPR 332
               + IT         ++  N RS   +LRA  R            H   
Sbjct: 301 RPYLELITSGAEKADARELEHNPRSAPVRLRAVARLRPAGQAPAPEEHPSP 351


>gi|319949143|ref|ZP_08023234.1| 16S rRNA m(4)C1402 methyltranserfase [Dietzia cinnamea P4]
 gi|319437192|gb|EFV92221.1| 16S rRNA m(4)C1402 methyltranserfase [Dietzia cinnamea P4]
          Length = 340

 Score =  310 bits (796), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 108/329 (32%), Positives = 168/329 (51%), Gaps = 22/329 (6%)

Query: 16  TIGDHVPVLLEKVIALLNP-----APGK---VILDATFGAGGYSRSFCKMGS--NVIALD 65
           T   HVPV LE+ I L  P     A      VI+D T G GG+S           V+ +D
Sbjct: 12  TRSGHVPVFLERTIELFRPVVEAAAEEGRAPVIVDGTLGLGGHSSHLLAEFGELRVLGVD 71

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD----------KGVDGVVFDLGVSS 115
           RDP A+      +  Y+++F+   A F      +              +DG++ D GVSS
Sbjct: 72  RDPEALDMATRRLTAYRDRFTPVHARFDDFNSVIAALPPDARDDAGPAIDGILLDFGVSS 131

Query: 116 MQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAH 174
           MQ+D  +RGF++    PLDMRM  + G +A+D++ +    +L RIL + GEE+ A +IA 
Sbjct: 132 MQLDVAERGFAYSVDAPLDMRMDPTTGPTAADILAEYPRDELARILRVYGEERFARQIAA 191

Query: 175 AIVKRRQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLR 233
           AIV+RR + P  T+  L  L+  T+   ++    HP  R FQALRI VN E+E +   + 
Sbjct: 192 AIVRRRDTDPIVTSSQLVELLYDTIPQGARRTGGHPGKRVFQALRIEVNAELEAVENAVP 251

Query: 234 SAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV 293
                L+ GG  + +++HSLED++VK+  A+R+         +    H   F+++T+   
Sbjct: 252 GYLDLLRLGGRAVFMAYHSLEDKIVKRELATRTASRTPAGLPVELPGHGPEFEAVTRGAE 311

Query: 294 VPTQEDVAFNRRSRSAKLRAGMRTVERSI 322
             +QE++  N RS S ++R   R   R+ 
Sbjct: 312 KASQEEIDHNPRSASVRVRCVRRIDGRTP 340


>gi|194741008|ref|XP_001952981.1| GF17544 [Drosophila ananassae]
 gi|190626040|gb|EDV41564.1| GF17544 [Drosophila ananassae]
          Length = 361

 Score =  310 bits (796), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 120/330 (36%), Positives = 175/330 (53%), Gaps = 31/330 (9%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76
            HVPVL +  I  L P PG   +D TFGAGG++R   +    + V ALDRDP A    +E
Sbjct: 31  PHVPVLCDTAIEHLQPLPGGTYIDMTFGAGGHTRRIFEKCPEAKVYALDRDPVAHQLARE 90

Query: 77  TM--RDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQK 129
                 YK +       FS +     + G+     +G++FD G SSMQ D  +RGFS  K
Sbjct: 91  LSQKEKYKGRLIPLLGKFSDIPKLFEEHGLSRNSLNGILFDFGCSSMQFDEAERGFSISK 150

Query: 130 SGPLDMRMS---CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APF 185
            GPLDMRM      G++A++V+++    DL RIL I GEEK A +IA  ++  R++    
Sbjct: 151 DGPLDMRMDGGHSGGVTAAEVLSKIEETDLARILRIYGEEKAAKKIARGLIDARKALVQI 210

Query: 186 QTTQDLSSLIQKTVYFSKNNRI-----HPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           +TT+ L+ L++  +             H AT++FQALRIFVNNE+ E+  G+  A + L+
Sbjct: 211 ETTKQLADLVEDILSSGPRRDKLQRPSHSATKTFQALRIFVNNELNEINYGMVLANEILR 270

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-------------PAVFQS 287
             G L+ ++FHSLED +VK+          A    +  + H                ++ 
Sbjct: 271 REGRLVTITFHSLEDTIVKRHINGNVVAGAANPLPLKYSGHDIIDDPEMLQSLVQTNWKP 330

Query: 288 ITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           + + V+VP  E+VA N RSRSAKLRA ++ 
Sbjct: 331 LHRHVIVPDAEEVARNSRSRSAKLRAAVKV 360


>gi|304373145|ref|YP_003856354.1| Ribosomal RNA small subunit methyltransferase H [Mycoplasma
           hyorhinis HUB-1]
 gi|304309336|gb|ADM21816.1| Ribosomal RNA small subunit methyltransferase H [Mycoplasma
           hyorhinis HUB-1]
          Length = 298

 Score =  310 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 101/307 (32%), Positives = 153/307 (49%), Gaps = 16/307 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76
           DH+PVLL++VI  LN     + LD T G GG+S    K      +I  D+D  A+   +E
Sbjct: 2   DHIPVLLDQVIDQLNIKEDGIYLDLTLGRGGHSSQILKKLTSGKLIVFDKDKQAIEQTKE 61

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +           + F      +       VDGV+ DLGVSS Q+D  +RGFS+ K   L
Sbjct: 62  KLLKISSNIEFIWSDFKDFDQELKKLQINKVDGVLLDLGVSSPQLDQANRGFSYNKQARL 121

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+     SA ++VN+ + + L  I    G+   A+ IA  IVK R   P   T +L 
Sbjct: 122 DMRMNQAQSFSAYELVNEYSKEKLVNIFTNYGQVPFANNIAENIVKLR---PITYTTELV 178

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I++++      + +PA   FQA+RI VN E+E L   L   +K LK  G L +++FHS
Sbjct: 179 DIIKQSLPNFVLRKKNPAKNVFQAIRIEVNQELESLNIFLSKIDKFLKKDGKLAIITFHS 238

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LED++VK +F     +       +      A +     K     Q+++  N+R++SAKLR
Sbjct: 239 LEDKIVKNYFKQLLKQ----NQTLFFETTQAKYLV---KTTWANQKEIDNNKRAKSAKLR 291

Query: 313 AGMRTVE 319
              + + 
Sbjct: 292 VLTKLIN 298


>gi|195107446|ref|XP_001998323.1| GI23693 [Drosophila mojavensis]
 gi|193914917|gb|EDW13784.1| GI23693 [Drosophila mojavensis]
          Length = 362

 Score =  310 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 124/329 (37%), Positives = 175/329 (53%), Gaps = 31/329 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           HVPVL E  I  L P PG   +D TFGAGG++R          V ALDRDP A    Q  
Sbjct: 33  HVPVLCETAIEYLQPKPGGKYIDMTFGAGGHTRKLLDSCPETTVYALDRDPVAHQLAQRM 92

Query: 78  MRD--YKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKS 130
            ++  Y+ +       FS L   +    V     DG++FD G SSMQ D   RGFS    
Sbjct: 93  SQEQNYEGRLIPMLGKFSDLPQLLQALDVPPRSFDGMLFDFGCSSMQFDEAARGFSIAHD 152

Query: 131 GPLDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQT 187
           GPLDMRM C   G+SA+DV+ +    DL RIL + GEEK A +IA AIV+ R +    +T
Sbjct: 153 GPLDMRMDCGRGGVSAADVLARIEEADLARILRVYGEEKAAKKIARAIVEARNALQRIET 212

Query: 188 TQDLSSLIQKTVYFSKNNRI-----HPATRSFQALRIFVNNEIEELAQGLRSAEK-ALKA 241
           T+ L+ L+   +             H AT++FQALRIFVNNE+ E+  G+  A++  L+A
Sbjct: 213 TRQLADLVAAVLGEGHRRDKLQRPSHVATKTFQALRIFVNNELNEINYGMVLAQELLLRA 272

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHP-------------AVFQSI 288
            G L+ ++FHSLED +VK+       + +A    +  + H              + ++ +
Sbjct: 273 QGRLVAITFHSLEDTIVKRHLNGNVIEGVANPLPLKYSGHDLTHDPELMESFVRSNWRQL 332

Query: 289 TKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
            + V++P   ++A N RSRSAKLRA ++ 
Sbjct: 333 HRHVILPDASEIARNSRSRSAKLRAAVKI 361


>gi|289209369|ref|YP_003461435.1| S-adenosyl-methyltransferase MraW [Thioalkalivibrio sp. K90mix]
 gi|288945000|gb|ADC72699.1| S-adenosyl-methyltransferase MraW [Thioalkalivibrio sp. K90mix]
          Length = 309

 Score =  310 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 119/306 (38%), Positives = 166/306 (54%), Gaps = 11/306 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H+PVL + V+  L        +D TFG GG+SR+       G +++A+DRDP A +    
Sbjct: 7   HIPVLRDAVLEGLAVRADGFYVDGTFGRGGHSRAILDRLGAGGSLLAMDRDPEAAAAASS 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYV----PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              D   +F      FS + D +    PD+  DGV  DLGVSS Q+D  +RGFSFQ  GP
Sbjct: 67  FADD--PRFVFEPGPFSTMADTLRRRFPDRAPDGVFLDLGVSSPQLDTPERGFSFQHDGP 124

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G SA+D + +A   ++  ++   GEE+ + R+A AIV  R  AP   T  L
Sbjct: 125 LDMRMDPTQGESAADWLARAEQDEIADVIYHYGEERHSRRVARAIVAARADAPITRTAQL 184

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++++ V   +  + HPATR+FQALRI VN E+EEL Q L +  +AL  G  ++V+SFH
Sbjct: 185 AEIVRRAVPGREPGK-HPATRTFQALRIHVNRELEELEQWLETIPEALHTGARMVVISFH 243

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+VK+            R +      P        K V    E+   N R+RSA L
Sbjct: 244 SLEDRMVKQALRGPRPDTRLPRGLPVMPETPERPWRPIGKPVRADAEEQRRNPRARSAVL 303

Query: 312 RAGMRT 317
           R G RT
Sbjct: 304 RVGERT 309


>gi|224282633|ref|ZP_03645955.1| S-adenosyl-methyltransferase [Bifidobacterium bifidum NCIMB 41171]
 gi|313139792|ref|ZP_07801985.1| S-adenosyl-methyltransferase [Bifidobacterium bifidum NCIMB 41171]
 gi|313132302|gb|EFR49919.1| S-adenosyl-methyltransferase [Bifidobacterium bifidum NCIMB 41171]
          Length = 370

 Score =  310 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 107/307 (34%), Positives = 159/307 (51%), Gaps = 11/307 (3%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           H PVLLE+ ++L+ PA   PG + +D T G  G++ +F K      V+ +DRD  A++  
Sbjct: 8   HQPVLLEQCVSLVAPALQDPGSIAVDCTLGLAGHTIAFLKAAPQARVLGIDRDAEALAMA 67

Query: 75  QETMRDYK--EQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQK 129
            E +      ++F    A F      + D+G+D    V  DLG+SS+QID  DRGFS+  
Sbjct: 68  TERIAGEGLSDRFIPVHAAFDAFGQVLDDQGIDRVNAVFMDLGLSSLQIDETDRGFSYAH 127

Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM  S  ++A  V+ +   ++L RI    GEE+ + +IA  IV+RR   P  T+
Sbjct: 128 DAPLDMRMDVSQPLTAQRVLAEYPERELVRIFRAYGEERFSRQIAREIVRRRAQEPLTTS 187

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ L+ + V  +     +PA R FQALRI VN E+++LA  L      L   G L+V 
Sbjct: 188 AQLNRLVDEVVPQAHRPAGNPAKRVFQALRIEVNGELDKLAGTLPQIACRLAPNGRLVVE 247

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           S+HSLED+ VK F              +  +     F  +T+  V    +++A N RS S
Sbjct: 248 SYHSLEDKTVKSFMNEGLRVDAPADMPVVPDDAQPFFAPLTRGAVQAGPDEIAANPRSAS 307

Query: 309 AKLRAGM 315
            +LR   
Sbjct: 308 VRLRGVE 314


>gi|157364289|ref|YP_001471056.1| S-adenosyl-methyltransferase MraW [Thermotoga lettingae TMO]
 gi|262825835|sp|A8F758|RSMH_THELT RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|157314893|gb|ABV33992.1| S-adenosyl-methyltransferase MraW [Thermotoga lettingae TMO]
          Length = 292

 Score =  310 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 117/308 (37%), Positives = 168/308 (54%), Gaps = 32/308 (10%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQET 77
           HVPV++++V++  +     V LD T GAGG+S +  +   GS VI +D D   +S  ++ 
Sbjct: 5   HVPVMVKEVLSYFSNLR-GVFLDCTVGAGGHSEAILENIKGSVVIGIDVDEEILSVAKQR 63

Query: 78  MRDYK--EQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           ++ Y+   +  L +AT+ + Q  +   GV   +G++ DLGVS++Q+  G+RGF+F   GP
Sbjct: 64  LKKYESEGRAKLLKATYVEAQRVLSQLGVKAVNGIIMDLGVSTLQLMKGERGFAFSSDGP 123

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEK-QASRIAHAIVKRRQSAPFQTTQD 190
           LDMRM     ++A D+VN      L RI    GEEK  A RIA  IVK R   P +TT  
Sbjct: 124 LDMRMDKTQRLTAYDIVNFWQENQLRRIFFEYGEEKRYAGRIARFIVKNR---PVETTAK 180

Query: 191 LSSLIQKTVYFSKNN--RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L  +I + +   +    R H ATR FQA+RI VNNE+E L   L      L   G +IV+
Sbjct: 181 LVEVIARALPEKERRFRRRHFATRVFQAIRIAVNNELENLRNFLVQVPDILNQNGRIIVI 240

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDR+VK+ F S                       +T+K V P+ E+V  N ++RS
Sbjct: 241 SFHSLEDRIVKEAFRS-----------------IQELDVLTRKPVRPSLEEVRENPKARS 283

Query: 309 AKLRAGMR 316
           AK+R   R
Sbjct: 284 AKMRIAER 291


>gi|194213931|ref|XP_001918167.1| PREDICTED: similar to methyltransferase 5 domain containing 1
           [Equus caballus]
          Length = 401

 Score =  310 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 127/328 (38%), Positives = 180/328 (54%), Gaps = 38/328 (11%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H+PV++E+V+  L P  G++ LD TFG+GG++R+  +  S+  + ALDRDP A +  ++ 
Sbjct: 72  HIPVMVEEVVRCLAPQKGQIFLDMTFGSGGHTRAILQKESDITLYALDRDPTAYALAEQL 131

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              Y +Q       FSQ +  +   GV     DGV+ DLG SSMQ+D  +RGFS +K GP
Sbjct: 132 SELYPKQIRAMLGQFSQAEALLMKAGVQPETLDGVLLDLGCSSMQLDAPERGFSLRKDGP 191

Query: 133 LDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           LDMRM         +A+DVVN  + + L  IL   GEEK A +IA AIV+ R   P   T
Sbjct: 192 LDMRMDGGRYPDMPTAADVVNALDQQALASILRTYGEEKHAKKIASAIVQARSIYPITRT 251

Query: 189 QDLSSLIQKTVYFSK--------NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           Q L+S++      S             H AT++FQA RIFVN+E+ EL  GL++A+K L+
Sbjct: 252 QQLASIVAGAFPPSAIYARKDLLQRSTHIATKTFQAFRIFVNDELNELYTGLKTAQKFLR 311

Query: 241 AGGLLIVVSFHSLEDRLVKKFF-------------------ASRSGKVMAVRHMIPSNAH 281
            GG L+ +SFHSLEDR+VK+F                    +S+ G     +        
Sbjct: 312 PGGRLVALSFHSLEDRIVKRFLLGISMAERFNLSARQKVIQSSQLGSGHKNKEGGSMGRA 371

Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           P +++ I K+VV P   DV +N R RSA
Sbjct: 372 PIMWELIHKRVVTPEDHDVEYNLRERSA 399


>gi|262831569|sp|A0PTJ6|RSMH_MYCUA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 345

 Score =  310 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 115/316 (36%), Positives = 172/316 (54%), Gaps = 18/316 (5%)

Query: 19  DHVPVLLEKVIALLNPA--------PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDP 68
            HVPVL ++ + LL PA           V++DAT GAGG++  F        +I LDRDP
Sbjct: 14  HHVPVLAQRCVELLRPALTRHHADGSEAVLVDATIGAGGHAERFLTELPGLRLIGLDRDP 73

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSSMQIDCGD 122
            A+   +  +  + ++ +L    +  L   + + G      +DG +FDLGVSSMQ+D  +
Sbjct: 74  SALEIVRTRLARFTDRVTLVHTRYDGLASALTELGYGAAQSIDGALFDLGVSSMQLDQAE 133

Query: 123 RGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGF++ K  PLDMRM+  S +S +D++N  +   L  IL   GEE+ A RIA  I++RR 
Sbjct: 134 RGFAYSKDAPLDMRMNPQSALSGADIINTYDEAALADILHRYGEERFARRIAARIIRRRA 193

Query: 182 SAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
             PF TT +L +L+ + +  + +    HPA R+FQALRI VN+E+  L   + +A  AL 
Sbjct: 194 DRPFTTTAELVALLYEAIPAAARRTGGHPAKRTFQALRIAVNDELGSLRSAVPAAMDALA 253

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300
            GG ++V+++ SLEDR+VK+ FA        V   +    H   F+S+T         +V
Sbjct: 254 VGGRIVVMAYQSLEDRIVKRVFADAVASRTPVDLPVELPGHGPRFRSLTHGAERADAAEV 313

Query: 301 AFNRRSRSAKLRAGMR 316
             N RS   +LRA  R
Sbjct: 314 EHNPRSAPVRLRALQR 329


>gi|237752673|ref|ZP_04583153.1| S-adenosyl-methyltransferase MraW [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229376162|gb|EEO26253.1| S-adenosyl-methyltransferase MraW [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 311

 Score =  310 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 105/308 (34%), Positives = 173/308 (56%), Gaps = 15/308 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76
            H+PVLLE+V+         +++D T G GG++ +  +   N+  I +D+D  A++   +
Sbjct: 4   PHIPVLLEQVLDSFKTLKSGILIDCTLGFGGHTHALLEAYPNLEIIGIDQDSDALAFTAK 63

Query: 77  TMRDYKEQFSLFQATFSQ-----LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            +  + E+FS  +  +S      L +    + + G++ D+GVSSMQ D  +RGF F    
Sbjct: 64  RLSVFGERFSYKKGRYSAVVRELLSNKALQENIVGILADIGVSSMQFDNKERGFCFDS-Y 122

Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM     +SA ++VN A++ +L RI    GE ++  ++A  IV+ R++A F + + 
Sbjct: 123 MLDMRMDREQHLSAKEIVNGASLNELERIFRDFGEIREYKKLARLIVEERKNAKFTSAKH 182

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRS-AEKALKAGGLLIVVS 249
           LS LI K     K+ +IHPAT++FQALRI VN+E+ EL + L++  E  LK G  + V++
Sbjct: 183 LSELIAKHF---KHPKIHPATQAFQALRIAVNDELGELERLLQTLGENPLKKGARVSVIT 239

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           FHSLEDR+ K+ F       +   ++         +  +S+ KK +   + ++  N RSR
Sbjct: 240 FHSLEDRITKQTFREWERDCICDCNIMRCICGGGHSKGKSLYKKPLCADESELRENPRSR 299

Query: 308 SAKLRAGM 315
           SAKLR+  
Sbjct: 300 SAKLRSFE 307


>gi|296284506|ref|ZP_06862504.1| S-adenosyl-methyltransferase MraW [Citromicrobium bathyomarinum
           JL354]
          Length = 303

 Score =  310 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 125/303 (41%), Positives = 181/303 (59%), Gaps = 10/303 (3%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET--MRDYKEQF 85
           ++A L P   ++I+D TFGAGGY+R+    G+ V A DRDP A+   Q    + +   + 
Sbjct: 1   MVAALRPVQDELIVDGTFGAGGYTRALLDAGATVHAFDRDPTALENAQGWPELAETPPRL 60

Query: 86  SLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI 142
            L +  F+ +   + ++G   VDG+V D+GVSSMQ+D  DRGFSF   GPLDMRM     
Sbjct: 61  VLHRRAFADMAAALAEQGIARVDGIVLDIGVSSMQLDQADRGFSFAGDGPLDMRMDPDLP 120

Query: 143 SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS 202
           SA+D +N A+  ++  ++   GEE+Q+ RIA AIV  R   P +TT  L+ L++K     
Sbjct: 121 SAADFLNSADEAEIADVIYQYGEERQSRRIARAIVAAR---PLETTGQLARLVRKATGHK 177

Query: 203 KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF 262
            +++  PATR+FQA+RI VN E+E+L   L +AE+ L  GG L+VVSFHSLEDR+VK+F 
Sbjct: 178 PHDKKDPATRTFQAIRIHVNGELEQLRGALAAAERLLAPGGRLVVVSFHSLEDRIVKRFM 237

Query: 263 ASRSGK-VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERS 321
              SG+     RH+  +   PA F    +  V   + ++A N R+RSA LRA  RT    
Sbjct: 238 RDASGQAGGGSRHLPLAETPPATFDKPLR-AVRAGEAELARNPRARSAILRAATRTDAAP 296

Query: 322 IED 324
            ++
Sbjct: 297 RKE 299


>gi|71066610|ref|YP_265337.1| S-adenosyl-methyltransferase MraW [Psychrobacter arcticus 273-4]
 gi|71039595|gb|AAZ19903.1| probable S-adenosyl-methyltransferase [Psychrobacter arcticus
           273-4]
          Length = 384

 Score =  310 bits (794), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 113/329 (34%), Positives = 173/329 (52%), Gaps = 31/329 (9%)

Query: 20  HVPVLLEKVIALL----------------NPAPGKVILDATFGAGGYSRSFCKMGSN--- 60
           H  VLL++ +A +                +     + +DATFG GG+SR      ++   
Sbjct: 60  HDAVLLQEAVAAVLGVKALPKQTDDESQNSLQASGIYVDATFGRGGHSRLLLSQLADNAT 119

Query: 61  VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQ 117
           +I  D+DP A+   QE +     +  +   +F+ L D +   G   VDG++ DLG+SS Q
Sbjct: 120 LIVFDKDPTAIRVAQE-LASTDSRVQVVHDSFATLTDSLAAMGITQVDGLMADLGISSPQ 178

Query: 118 IDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
           ID G RGFSF + G +DMRM  S G S ++ +   +   L  +L   GEE+ + RIA AI
Sbjct: 179 IDDGSRGFSFMRDGAVDMRMDTSRGQSVAEWLETVDDDTLANVLYDFGEERHSRRIARAI 238

Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236
              +Q   +++T +L+ +I+      +  + HPAT+SFQA+RIF+NNE+ ++   L  + 
Sbjct: 239 ---KQMDRYKSTLELAEVIKVAHPNWQRGK-HPATQSFQAMRIFINNELGDVDNFLEQSI 294

Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK-KVVVP 295
             LK GG L V+SFHSLEDR +K+F    S         +P    P   +  +K K V P
Sbjct: 295 PILKVGGQLAVISFHSLEDRRIKQFLQRHSKGQYPEDENLP--MPPKRPRYFSKPKRVGP 352

Query: 296 TQEDVAFNRRSRSAKLRAGMRTVERSIED 324
           ++ +++ N RSRSA LR   RT    + D
Sbjct: 353 SKAEISNNPRSRSAWLRMATRTDTDYLAD 381


>gi|86740113|ref|YP_480513.1| S-adenosyl-methyltransferase MraW [Frankia sp. CcI3]
 gi|123737617|sp|Q2JD58|RSMH_FRASC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|86566975|gb|ABD10784.1| methyltransferase [Frankia sp. CcI3]
          Length = 321

 Score =  310 bits (794), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 111/309 (35%), Positives = 173/309 (55%), Gaps = 11/309 (3%)

Query: 24  LLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETM 78
           L ++V+ LL PA    G +++DAT G GG++ +      +  ++ LDRDP A+    E +
Sbjct: 2   LTDRVLTLLAPALRASGAIVVDATVGLGGHAAAVLTAFPHVRLVGLDRDPDALERSGERL 61

Query: 79  RD-YKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
                 +  L  A + ++ + +   G   V G++FDLGVSS+Q+D  DRGF++ +  PLD
Sbjct: 62  HGLAPGRVELVHAVYDEVAEILDRLGHPVVQGILFDLGVSSLQLDTDDRGFAYSRDAPLD 121

Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM  + G +A+DV+N  +   LTRIL   GEE+ A RIA AIV+ R   PF T+  L+ 
Sbjct: 122 MRMDQTRGRTAADVLNTYDADALTRILREYGEERFARRIAGAIVQARAVTPFATSARLAD 181

Query: 194 LIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           L++  +   ++    +PA R+FQALRI VN E++ LA+ L +A  AL   G L+V+S+HS
Sbjct: 182 LVRDAIPAPARRTGGNPAKRTFQALRIEVNAELDVLARALPAAFDALAVSGRLVVLSYHS 241

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDRLVK+     +   +     +         + +T+     ++ + A N R+ S +LR
Sbjct: 242 LEDRLVKRQLRGYAEASVPPDLPVVPEGAGPRLRWLTRGAEPASETEKAENPRAASVRLR 301

Query: 313 AGMRTVERS 321
           A  RT    
Sbjct: 302 AVERTAPNP 310


>gi|126695529|ref|YP_001090415.1| S-adenosylmethionine-dependent methyltransferase [Prochlorococcus
           marinus str. MIT 9301]
 gi|262824906|sp|A3PAN9|RSMH_PROM0 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|126542572|gb|ABO16814.1| Predicted S-adenosylmethionine-dependent methyltransferase
           [Prochlorococcus marinus str. MIT 9301]
          Length = 300

 Score =  310 bits (794), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 108/316 (34%), Positives = 174/316 (55%), Gaps = 30/316 (9%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLN----PAPGKV-ILDATFGAGGYSRSFCKMGSNV--I 62
           +     +  +H  V+ ++++A L         ++  +DAT G GG+S    +  S++  I
Sbjct: 3   TDLSDSSFFNHKSVMTDEIMASLEHYPLIHNNQLKGIDATLGGGGHSYHLLRKYSDLNII 62

Query: 63  ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGD 122
            LD+DPFA     + + ++K +  +  + F+   D+VP + V  V+ DLGV+S Q+D   
Sbjct: 63  GLDQDPFARKSALKKLDEFKSRIDIRASNFA---DFVPKEKVSFVIADLGVNSNQLDDPK 119

Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI-VKRR 180
           RGFSFQK GPLDMRM+    + A  ++   N KDL  ++   G+E+ + +IA  I +  +
Sbjct: 120 RGFSFQKDGPLDMRMNPLLDVDAEKLIEVLNEKDLANLIYKYGDERLSRKIARKIKLDLK 179

Query: 181 QSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
           ++  +  T++L+  I        +  +IHPATR+FQALRI VN EIE L + L+   + L
Sbjct: 180 ENGKYSGTKELAYSIAGCFPPKQRYKKIHPATRTFQALRIAVNKEIEVLEKFLQVVPEWL 239

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
             GG++ V+SFHSLEDRLVK  F +                     +++TKK + P++E+
Sbjct: 240 LPGGIISVISFHSLEDRLVKSCFKND-----------------QRLKNLTKKPITPSEEE 282

Query: 300 VAFNRRSRSAKLRAGM 315
           V  N+R+RS KLR   
Sbjct: 283 VELNKRARSGKLRIAQ 298


>gi|309807753|ref|ZP_07701687.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LactinV
           01V1-a]
 gi|308169013|gb|EFO71097.1| S-adenosyl-methyltransferase MraW [Lactobacillus iners LactinV
           01V1-a]
          Length = 288

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 95/249 (38%), Positives = 141/249 (56%), Gaps = 13/249 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77
           H  VLL + I  LN     V +DATFG GG++    K     ++I  D+D +A+   +++
Sbjct: 7   HYSVLLHETIDNLNLKNDGVYVDATFGGGGHASYLLKQLSNGHLIGFDQDEYAIELAKKS 66

Query: 78  M-----RDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
                  + K + SL    F  LQ  +       G+DG+ +DLGVSS Q D  +RGFS++
Sbjct: 67  FSEVLKANSKPKLSLVHDNFGNLQQNLAKLGFIDGIDGIYYDLGVSSPQFDQPERGFSYR 126

Query: 129 KSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
            +  LDMRM  +  + A  +VN  + K+L+ IL   G+EK A +IA  IV RR   P  T
Sbjct: 127 FNARLDMRMDQTKDLDAYKIVNTWSQKELSNILFKYGDEKYARQIAKNIVARRAIKPITT 186

Query: 188 TQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T +L  +I++ +  F++    HPA +SFQA+RI VN+E+E L + L  A + LK GG + 
Sbjct: 187 TFELVDIIKEAIPAFARRTGGHPAKKSFQAIRIAVNDELEVLEKSLLEAIEILKPGGRIC 246

Query: 247 VVSFHSLED 255
           V++F SLED
Sbjct: 247 VITFQSLED 255


>gi|326771704|ref|ZP_08230989.1| S-adenosyl-methyltransferase MraW [Actinomyces viscosus C505]
 gi|326637837|gb|EGE38738.1| S-adenosyl-methyltransferase MraW [Actinomyces viscosus C505]
          Length = 375

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 117/339 (34%), Positives = 180/339 (53%), Gaps = 24/339 (7%)

Query: 17  IGDHVPVLLEKVIALLNPAPGK-------------VILDATFGAGGYSRSFCKMGS--NV 61
           +G H PVLLE+ + LL PA                V++D T G GG++ +  +  +   V
Sbjct: 14  VGRHKPVLLERCLDLLAPAIEGAAGSAAAPGPAQPVMIDCTLGMGGHTEAALERFATLKV 73

Query: 62  IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV------DGVVFDLGVSS 115
           + +DRDP A++     +  + ++F   QAT+  +     +  V      D V+ DLGVSS
Sbjct: 74  VGIDRDPEAIALASARLARFGDRFVAVQATYDAVSRVAREHSVRAEGTVDAVLMDLGVSS 133

Query: 116 MQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAH 174
           +Q+D   RGFS+ +  PLDMRM   SG++A D++  A+  +LTRIL   GEE+ ASRIA 
Sbjct: 134 LQLDEASRGFSYARPAPLDMRMDQGSGMTAQDLLEHADAAELTRILRTYGEERFASRIAA 193

Query: 175 AIVKRRQSA-PFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGL 232
           AIV+RR+S  P  +TQDL+ L++++V   ++ +  HPA R+FQALRI VN E++ L + +
Sbjct: 194 AIVRRRESGDPVASTQDLAELVRQSVPAPARRSGGHPAKRTFQALRIAVNAELDVLERAV 253

Query: 233 RSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV 292
             A  +L+ GG L+V S+ SLEDR+VK+  A  +         +         + +T   
Sbjct: 254 PRALNSLRVGGRLVVESYQSLEDRIVKRALAHGATSRAPQDLPVVPEVDRPYLELLTNGA 313

Query: 293 VVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDDSFVHLP 331
                 ++  N RS   +LRA +R              P
Sbjct: 314 EKADARELDHNPRSAPVRLRAAVRLRPADQAPSPEASAP 352


>gi|229817311|ref|ZP_04447593.1| hypothetical protein BIFANG_02572 [Bifidobacterium angulatum DSM
           20098]
 gi|229785100|gb|EEP21214.1| hypothetical protein BIFANG_02572 [Bifidobacterium angulatum DSM
           20098]
          Length = 354

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 108/320 (33%), Positives = 162/320 (50%), Gaps = 13/320 (4%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIA----LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVI 62
           M+         H PVLLE  +      L+     +I+D T G  G++ +F K      ++
Sbjct: 1   MTMDNRDVSTIHQPVLLEDCVRLVTGGLSRKQSPIIVDCTLGLAGHATAFLKAAPQARLV 60

Query: 63  ALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQ 117
            +DRD  A++   E M+     ++F    A F +    + D G   VD    DLG+SS+Q
Sbjct: 61  GIDRDAEALALATERMKAEGLADRFIPVHAPFDEFTRALDDNGIHHVDAAFMDLGLSSLQ 120

Query: 118 IDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
           ID  +RGFS+    PLDMRM  S  ++A  V+ + + +DL RI  + GEE+ A  IA  I
Sbjct: 121 IDETERGFSYSHDAPLDMRMDVSQALTAEQVLAEYDERDLARIFKVYGEERFARPIARRI 180

Query: 177 VKRR-QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           V RR Q  P  T+ +L+ L+ + +  +     +PA R FQALRI VN E+++LA  L   
Sbjct: 181 VARRTQEGPLTTSAELNELVDEVIPKAHRPAGNPAKRVFQALRIEVNGELDKLAGTLPQI 240

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295
              L  GG ++V S+HSLED+ VK F        +     I        F+ +T+  V  
Sbjct: 241 ALKLNKGGRIVVESYHSLEDKTVKSFMTQGLTARVPANMPIVPPEAMPFFKELTRGAVKA 300

Query: 296 TQEDVAFNRRSRSAKLRAGM 315
            ++++A N RS S +LRA  
Sbjct: 301 DEQEIASNPRSASVRLRAVE 320


>gi|156551077|ref|XP_001602807.1| PREDICTED: similar to GA13173-PA [Nasonia vitripennis]
          Length = 426

 Score =  309 bits (793), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 123/338 (36%), Positives = 176/338 (52%), Gaps = 35/338 (10%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFA 70
           + +    H PV+L++ I  L  +PG  I+D TFGAGG+SR   +   +V   ALDRD  A
Sbjct: 90  LPYKHQPHTPVMLKETIEYLKLSPGDTIVDMTFGAGGHSRKILESVPHVTIFALDRDEVA 149

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYV-----PDKGVDGVVFDLGVSSMQIDCGDRGF 125
            +  +E    Y  Q       FS+L   +      +  +DG +FD G SSMQ D  +RGF
Sbjct: 150 HNYAKELAEKYPGQVIPLLGRFSELPQLLGKYKVKENSIDGFLFDFGCSSMQFDRPERGF 209

Query: 126 SFQKSGPLDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
              K+GPLDMRM         +A+DV+ +A+ +DL  IL   GEEK+A +IA AI++ R 
Sbjct: 210 MISKNGPLDMRMDGFRCPEEPTAADVLARADERDLYHILKYYGEEKRAKKIARAIIEARY 269

Query: 182 S-APFQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           +    +TTQ+L+ LI+                H AT++FQALRIFVNNE+ E+  G+  A
Sbjct: 270 TFRSLRTTQELAKLIESLFPSDINTDQIGRFQHSATKTFQALRIFVNNELNEINHGIVIA 329

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFF----------------ASRSGKVMAVRHMIPSN 279
           EK LK  G +I +SFHSLED +VK+                   +          ++   
Sbjct: 330 EKLLKINGRMITISFHSLEDTIVKRHLSGNVTDSVANQLPLRYRNYGKVWTCKEDIMELT 389

Query: 280 AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
             P  +  + K ++ PT E+V +N RSRSAK RA  + 
Sbjct: 390 ESP--WMMLHKHILSPTDEEVYYNPRSRSAKFRAIAKI 425


>gi|225619046|ref|YP_002720272.1| S-adenosyl-methyltransferase MraW [Brachyspira hyodysenteriae WA1]
 gi|263445852|sp|C0QWF7|RSMH_BRAHW RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|225213865|gb|ACN82599.1| S-adenosyl-methyltransferase MraW [Brachyspira hyodysenteriae WA1]
          Length = 300

 Score =  309 bits (793), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 98/302 (32%), Positives = 173/302 (57%), Gaps = 16/302 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H PV+L++V++ + P   K+ +DAT G GG++++   +   V + +RD   +   ++ ++
Sbjct: 11  HTPVMLKEVLSFI-PENAKIAVDATLGEGGHTKAMLDLNLEVHSFERDSAILEIAKKRLK 69

Query: 80  DYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
           +Y ++F  +  T+ ++ + + D     VD +++DLGVS       +RGFSF+ +  LDMR
Sbjct: 70  NY-DKFHYYNNTYDKMIEELDDSIIGNVDFMLYDLGVSLFHFKKAERGFSFKDNVRLDMR 128

Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
           +  +  SA DV+N  + ++L R+L   GE   A ++A+ IVK R     +T+++L ++I 
Sbjct: 129 LGLNEKSAYDVINGYSEEELERVLRDYGEISNARKMANVIVKERNRRKIETSRELENIIF 188

Query: 197 K-TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
             T    +  +IHPAT  FQA+RI VN+E+  L + + +    LK  G+++V+S+HSLED
Sbjct: 189 HNTDKSQRYGKIHPATLVFQAIRIEVNDELNILEKSISNIPSILKQNGVVVVMSYHSLED 248

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           R++KKFF               +     +F+ +  KV +PT E++  N  SRSAK+R   
Sbjct: 249 RIIKKFFKENEK----------TKNKDGIFKLLNNKVKLPTNEEIKSNPASRSAKMRIAQ 298

Query: 316 RT 317
           + 
Sbjct: 299 KV 300


>gi|330723232|gb|AEC45602.1| Ribosomal RNA small subunit methyltransferase H [Mycoplasma
           hyorhinis MCLD]
          Length = 298

 Score =  309 bits (793), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 101/307 (32%), Positives = 152/307 (49%), Gaps = 16/307 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76
           DH+PVLL++VI  LN     + LD T G GG+S    K      +I  D+D  A+   +E
Sbjct: 2   DHIPVLLDQVIDQLNIKEDGIYLDLTLGRGGHSSQILKKLTSGKLIVFDKDKQAIEQTKE 61

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +           + F      +       VDGV+ DLGVSS Q+D  +RGFS+ K   L
Sbjct: 62  KLLKISSNIEFIWSDFKDFDQELKKLQINKVDGVLLDLGVSSPQLDQANRGFSYNKQARL 121

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+     SA ++VN+ + + L  I    G+   A+ IA  IVK R   P   T +L 
Sbjct: 122 DMRMNQAQSFSAYELVNEYSKEKLVNIFTNYGQVPFANNIAEDIVKLR---PITYTTELV 178

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I+ ++      + +PA   FQA+RI VN E+E L   L   +K LK  G L +++FHS
Sbjct: 179 DIIKHSLPNFVLRKKNPAKNVFQAIRIEVNQELESLNIFLSKIDKFLKKDGKLAIITFHS 238

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LED++VK +F     +       +      A +     K     Q+++  N+R++SAKLR
Sbjct: 239 LEDKIVKNYFKQLLKQ----NQTLFFETTQAKYLV---KTTWANQKEIDNNKRAKSAKLR 291

Query: 313 AGMRTVE 319
              + + 
Sbjct: 292 VLTKLIN 298


>gi|123967726|ref|YP_001008584.1| S-adenosylmethionine-dependent methyltransferase [Prochlorococcus
           marinus str. AS9601]
 gi|262824992|sp|A2BNW6|RSMH_PROMS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|123197836|gb|ABM69477.1| Predicted S-adenosylmethionine-dependent methyltransferase
           [Prochlorococcus marinus str. AS9601]
          Length = 300

 Score =  309 bits (793), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 107/316 (33%), Positives = 174/316 (55%), Gaps = 30/316 (9%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLN----PAPGKV-ILDATFGAGGYSRSFCKMGSNV--I 62
           +     +  +H  V+ ++++A L         ++  +DAT G GG+S    +  S++  I
Sbjct: 3   TDLSDSSFFNHQSVMTDEIMASLEHYPLIHNNQLKGIDATLGGGGHSYHLLRKYSDLNII 62

Query: 63  ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGD 122
            LD+DPFA     + + ++K +  +  + F+   D+VP + V  V+ DLGV+S QID   
Sbjct: 63  GLDQDPFARKSASKKLDEFKNRIDIRASNFA---DFVPKEKVSFVIADLGVNSNQIDDPK 119

Query: 123 RGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI-VKRR 180
           RGFSFQK GPLDMRM+    + A  ++   N KDL  ++   GEE+ + +IA  I +  +
Sbjct: 120 RGFSFQKDGPLDMRMNPFLDVDADKLIEALNEKDLANLIYKYGEERLSRKIARKIKLDLK 179

Query: 181 QSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
           ++  +  T++L+  I        +  +IHPATR+FQALRI VN EIE L + L+   + L
Sbjct: 180 ENGKYSGTKELAYSIAGCFPPKQRYKKIHPATRTFQALRIAVNKEIEVLEKFLQVVPEWL 239

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
             GG++ ++SFHSLEDRLVK  F +                     +++TKK + P++++
Sbjct: 240 LPGGIISIISFHSLEDRLVKSCFKND-----------------QRLKNLTKKPITPSEQE 282

Query: 300 VAFNRRSRSAKLRAGM 315
           +  N+R+RS KLR   
Sbjct: 283 IELNKRARSGKLRIAQ 298


>gi|153952604|ref|YP_001398362.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp.
           doylei 269.97]
 gi|263445759|sp|A7H4D2|RSMH_CAMJD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|152940050|gb|ABS44791.1| S-adenosyl-methyltransferase MraW [Campylobacter jejuni subsp.
           doylei 269.97]
          Length = 310

 Score =  309 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 102/302 (33%), Positives = 156/302 (51%), Gaps = 9/302 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76
            H+PVLL +V  +         LD T G GG+S +  K    +  IA D+D  A+   ++
Sbjct: 4   PHIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSETLLKNHPGLKFIACDQDQQALEFSKK 63

Query: 77  TMRDYKEQFSLFQATFSQ-LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
            ++D+  + +  Q+ FS+ L+     + + G++ D+GVSS Q+D  +RGFS      LDM
Sbjct: 64  RLKDFHNRITFIQSNFSEVLEKISHKEELRGILADIGVSSFQLDNNERGFSVNSD-FLDM 122

Query: 136 RMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           RM+  S ISA +VVN    + LT I    GE   A  IA  I   R     ++ ++L  +
Sbjct: 123 RMNQNSKISAYEVVNAYTKEQLTSIFKDYGELHDAHFIAEKICLERSKNLIKSAKELYQI 182

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           I K      + +I  AT +FQA+RI VN E++ L   L   E       +L ++SFHSLE
Sbjct: 183 IGK--GKQNHRKISKATLAFQAIRIEVNQELKVLKDFLGYLENLKPKNCILAIISFHSLE 240

Query: 255 DRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           DR+VK FF   S   +    +       + ++ Q ITKK +  ++E++  N RS  AK+R
Sbjct: 241 DRIVKNFFKKWSKNCICDEKIMRCKCGNNHSLGQIITKKSISASKEELLKNSRSSCAKMR 300

Query: 313 AG 314
           A 
Sbjct: 301 AF 302


>gi|145350048|ref|XP_001419435.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579666|gb|ABO97728.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 314

 Score =  309 bits (792), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 108/315 (34%), Positives = 166/315 (52%), Gaps = 25/315 (7%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDY 81
           +++V+        +  +D T GAGG++R+  +      + +  D D  A +  +  +   
Sbjct: 1   MDEVLEAFRDVRARTHVDGTLGAGGHARAMIEAHEEMEHFVGFDVDASAHALARPRLERA 60

Query: 82  KE-----------QFSLFQATFSQLQDYVPDKGVDGVV---FDLGVSSMQIDCGDRGFSF 127
           +            + SL +A F ++++ +    VDGV     DLGVSSM +D  +RGFSF
Sbjct: 61  RAATRGDEATTTLRLSLVEANFRRMREALRALDVDGVDSVVLDLGVSSMHLDRAERGFSF 120

Query: 128 QKSGPLDMRMSCSGIS-ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
              GPLDMRM  S  + A ++VN    +++ RIL   GEEK    +A  I +RR     +
Sbjct: 121 MNDGPLDMRMGESATTTAEEIVNAWPEEEIGRILREYGEEKHWRLLARRICERRAEKEIR 180

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           TT++L   I       K   IHPATR+FQ +RI VN+E+  +   + +A +AL+ GG L 
Sbjct: 181 TTRELVDAIGNV--PGKWGSIHPATRTFQGIRIAVNDELGAVEDVIPAAIEALRPGGRLA 238

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAV-----RHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           ++SFHSLED +VK+ F   +G+         R+M    A P + + IT+K  VPT  ++ 
Sbjct: 239 IISFHSLEDSIVKRRFRHFAGRAEPPSEEVNRYMPQPEAPPKIVKLITRKPKVPTSAEID 298

Query: 302 FNRRSRSAKLRAGMR 316
            N RSRSAKLR   +
Sbjct: 299 VNVRSRSAKLRVCEK 313


>gi|303279384|ref|XP_003058985.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226460145|gb|EEH57440.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 295

 Score =  309 bits (792), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 107/293 (36%), Positives = 150/293 (51%), Gaps = 14/293 (4%)

Query: 38  KVILDATFGAGGYSRSFCKMGSNVI---ALDRDPFAVSCGQ--ETMRDYKEQFSLFQATF 92
           K  +D T GAGG++ +       ++     D DP A +       + +       F+A  
Sbjct: 2   KTYVDGTMGAGGHACAVIGEHLELVTFVGFDVDPLAHAIAPRGARVLELNTVLDNFRAMR 61

Query: 93  SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQA 151
            +L +   +  VD ++ DLGVSSM +D  +RGFSF   GPLDMRM  S   SA DVVN+ 
Sbjct: 62  FRLDELELNGKVDAILLDLGVSSMHLDSPERGFSFGNDGPLDMRMGPSCAFSAMDVVNEW 121

Query: 152 NVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRI--HP 209
             +D+ R++   GEEK    IA  I +RR  AP  TT  L   I +     K      HP
Sbjct: 122 PEEDIARVIRDYGEEKHWRLIARRICERRAEAPILTTSALVRAIGRVPGVKKGRSGNVHP 181

Query: 210 ATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKV 269
           ATR+FQ +RI VN+E+  +   + +A  AL  GG L V+SFHSLED++VK  F  R+G+ 
Sbjct: 182 ATRTFQGIRIAVNDELGAIEDAIPAAIDALAPGGRLGVISFHSLEDKIVKDIFRERAGRA 241

Query: 270 MAVRH------MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
                             P V + IT+K +   +++V  N RSRSAKLR   +
Sbjct: 242 PPPDEGPVSAWAPQPEPPPKVVKLITRKPLSADEDEVRENARSRSAKLRVCEK 294


>gi|115372771|ref|ZP_01460077.1| S-adenosyl-methyltransferase MraW [Stigmatella aurantiaca DW4/3-1]
 gi|115370252|gb|EAU69181.1| S-adenosyl-methyltransferase MraW [Stigmatella aurantiaca DW4/3-1]
          Length = 278

 Score =  309 bits (792), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 105/282 (37%), Positives = 153/282 (54%), Gaps = 8/282 (2%)

Query: 40  ILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYV 99
           ILD T G GG++ +    G+ VI +DRDP A++     +  +   F      F +L    
Sbjct: 2   ILDGTLGGGGHTEALLARGATVIGVDRDPVALAAATARLGGHAH-FQARAGNFGELPRVA 60

Query: 100 PDK-GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTR 158
            D   VDGV+ DLGVSS Q+D  +RGFSF   GPLDMRM   G +A++++ Q + ++L R
Sbjct: 61  ADVLPVDGVLVDLGVSSPQLDVAERGFSFNHDGPLDMRMGPEGRTAAELIAQEDERELAR 120

Query: 159 ILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQAL 217
           I+  LGEE  +  IA  + +         T + +  +++ V       RIH AT++FQAL
Sbjct: 121 IIYELGEESFSRPIARELKRALP----TRTLEAAEAVKRAVPRKAWPKRIHVATKTFQAL 176

Query: 218 RIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MI 276
           R+ VN E+E L   L +  + LK GG   V++FHSLEDR VK+ F +  G         +
Sbjct: 177 RMAVNGELEALDALLGALPRLLKVGGRAAVIAFHSLEDRKVKEAFRNLVGACRCPPGLPV 236

Query: 277 PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318
            +   P  F  +TKK V  ++++V  N RSRSA LRA  +  
Sbjct: 237 CACGGPGDFAPLTKKAVSASEQEVELNPRSRSAHLRAVEKIR 278


>gi|237785335|ref|YP_002906040.1| S-adenosyl-methyltransferase [Corynebacterium kroppenstedtii DSM
           44385]
 gi|263446144|sp|C4LI42|RSMH_CORK4 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|237758247|gb|ACR17497.1| S-adenosyl-methyltransferase [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 390

 Score =  309 bits (792), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 112/330 (33%), Positives = 175/330 (53%), Gaps = 23/330 (6%)

Query: 11  SAIHHTIGDHVPVLLEKVIALLNP--------APGKVILDATFGAGGYSRSFCKMGSN-- 60
           +  H     HVPV+LE+++ L+ P        +   VILD T GAGG++ SF +   +  
Sbjct: 2   ADRHTGTHGHVPVMLERMVELIAPTVTESSENSAPSVILDGTLGAGGHTESFLERFPSAM 61

Query: 61  VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD-----------KGVDGVVF 109
           VI +DRD   +S   E +  ++++F    A F    + + D            G+    F
Sbjct: 62  VIGVDRDKKELSRTTERLSRFQDRFYPVHARFDNFDEALDDADHPVVDAFDAHGLSAGFF 121

Query: 110 DLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQ 168
           DLGVSSMQ+D  DRGF+++  GPLDMRM  S G +A+DV+N  +  +L RIL   G+E+ 
Sbjct: 122 DLGVSSMQLDQVDRGFTYRDDGPLDMRMDTSTGKTAADVLNTYSHGELARILKTYGDERF 181

Query: 169 ASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYF-SKNNRIHPATRSFQALRIFVNNEIEE 227
           A  +A AIV+ R+  P+ T+Q L  LI  T+   ++ +  HPA R+FQALR+ VN E++ 
Sbjct: 182 AGPLARAIVREREKEPWSTSQRLVDLIYATIPASARRHGGHPAKRTFQALRVEVNAELDA 241

Query: 228 LAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS 287
           L + +      L  GG  + +S+ SLED++VK+  A+ +         I        F  
Sbjct: 242 LRRVIPKVCSYLHLGGRAVFMSYQSLEDKIVKRELAALTESKTPPGLPIDLPNSAPDFHL 301

Query: 288 ITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           +T+      +++   N R+ S ++RA  RT
Sbjct: 302 VTRGSEKADEQENNKNPRAHSVRVRAVERT 331


>gi|296393499|ref|YP_003658383.1| S-adenosyl-methyltransferase MraW [Segniliparus rotundus DSM 44985]
 gi|296180646|gb|ADG97552.1| S-adenosyl-methyltransferase MraW [Segniliparus rotundus DSM 44985]
          Length = 319

 Score =  309 bits (792), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 112/311 (36%), Positives = 177/311 (56%), Gaps = 7/311 (2%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           HVPVLL +V+ LL PA   P  V++DAT G GG++++  +      V+ +DRD  A+   
Sbjct: 8   HVPVLLHRVVQLLAPALSAPNPVLVDATLGLGGHTKALLERFPALRVVGVDRDEKAIEVA 67

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +  +    ++     A F +++  + D+  +G + DLGVSSMQ+D   RGF++ K  PLD
Sbjct: 68  RARLGALADRVRFVHARFDEVEHALGDEAANGYLLDLGVSSMQLDQAQRGFAYSKEAPLD 127

Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM  S  ++A++V+     ++L R+L   GEE+ ASRIA AIV+RR +AP  ++ +L  
Sbjct: 128 MRMDSSAELTAAEVLATYEERELARVLRTYGEERFASRIAAAIVRRRSTAPLSSSAELVR 187

Query: 194 LIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           LI   +    K    HPA R+FQALR+ VN+E+  L   L  A  AL   G ++V+++ S
Sbjct: 188 LIDDAIPAKAKRTGGHPAKRTFQALRVEVNDELGSLRAALPKALAALAPSGRIVVLAYQS 247

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK+ FA  +     +   +      A F S+T+   + + E++A N R+ S +LR
Sbjct: 248 LEDRIVKEAFARATTSRTPIGLPVELPGFAAEFVSLTRGAELASDEEIAQNSRAASVRLR 307

Query: 313 AGMRTVERSIE 323
              R     ++
Sbjct: 308 GVERIPHAEVD 318


>gi|282857251|ref|ZP_06266491.1| S-adenosyl-methyltransferase MraW [Pyramidobacter piscolens W5455]
 gi|282584901|gb|EFB90229.1| S-adenosyl-methyltransferase MraW [Pyramidobacter piscolens W5455]
          Length = 313

 Score =  309 bits (791), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 116/324 (35%), Positives = 169/324 (52%), Gaps = 23/324 (7%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76
           +HVPVLL KV+  ++     +I+D T G GGYS +F K      V+ +DRD  A +   +
Sbjct: 4   EHVPVLLAKVVESMDLKADALIVDGTLGLGGYSEAFLKRSPRWRVVGIDRDERARNIACQ 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  + E+F      F  +       G   VD VV DLGVS+MQ+  G RGFSF++ GPL
Sbjct: 64  RLAPFGERFLALDGDFRNIGGLCASVGIRAVDCVVLDLGVSNMQLADGRRGFSFREDGPL 123

Query: 134 DMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           DMRM+ +    SAS++VN+   + L  I    GEE+ A  IA  IVK R   P  +T +L
Sbjct: 124 DMRMNPAEGTRSASELVNELPRESLADIFRKYGEERFAWSIAGEIVKERLKRPITSTAEL 183

Query: 192 SSLIQKTVYFS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
             +I++ +     +    HPA + FQALR+ VN+E+  L QGL  A   L   G L+VV+
Sbjct: 184 VEVIRRGIPAPVMRKMNGHPARKVFQALRVAVNDELGALEQGLDEAFSLLAEEGRLLVVT 243

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           +HSLEDR+VK+ F   + +   V                 +K  VP  E+V  N +SRSA
Sbjct: 244 YHSLEDRIVKRRFREWNEEGKGVLEP--------------RKGQVPDDEEVERNPKSRSA 289

Query: 310 KLRAGMRTVERSIEDDSFVHLPRL 333
           +LR  ++    +  +       R+
Sbjct: 290 RLRGFLKKNVPNKAEGRIGPWRRV 313


>gi|254527132|ref|ZP_05139184.1| S-adenosyl-methyltransferase MraW [Prochlorococcus marinus str. MIT
           9202]
 gi|221538556|gb|EEE41009.1| S-adenosyl-methyltransferase MraW [Prochlorococcus marinus str. MIT
           9202]
          Length = 300

 Score =  309 bits (791), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 109/316 (34%), Positives = 175/316 (55%), Gaps = 30/316 (9%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLN----PAPGKV-ILDATFGAGGYSRSFCKMGSNV--I 62
           +     +  +H  V+ +++IA L         ++  +DAT G GG+S +  +  S +  I
Sbjct: 3   TDLSDSSFFNHKSVMTDEIIASLEHYPLIHNNQLKGIDATLGGGGHSFNLLRKYSELNII 62

Query: 63  ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGD 122
            LD+DPFA     + +  +K +  +  + F+   D+VP + V  V+ DLGV+S QID   
Sbjct: 63  GLDQDPFARISASKKLDKFKNRIDIRASNFA---DFVPKEKVSFVIADLGVNSNQIDDPK 119

Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI-VKRR 180
           RGFSFQK GPLDMRM+    + A  ++   N KDL  ++   G+E+ + +IA  I +  +
Sbjct: 120 RGFSFQKDGPLDMRMNPLLEVDAEKLIEALNEKDLANLIYKYGDERLSRKIARKIKLDLK 179

Query: 181 QSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
           ++  +  T++L+  I        +  +IHPATR+FQALRI VN EIE L + L++  + L
Sbjct: 180 ENGKYSGTKELAYSIAGCFPPKQRYKKIHPATRTFQALRIAVNKEIEVLEKFLQAVPEWL 239

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
             GG++ ++SFHSLEDRLVK  F +                     +++TKK + P++++
Sbjct: 240 LPGGIISIISFHSLEDRLVKSSFKND-----------------QRLKNLTKKPITPSEQE 282

Query: 300 VAFNRRSRSAKLRAGM 315
           V FN+R+RS KLR   
Sbjct: 283 VEFNKRARSGKLRIAQ 298


>gi|160896909|ref|YP_001562491.1| S-adenosyl-methyltransferase MraW [Delftia acidovorans SPH-1]
 gi|263446201|sp|A9BUJ8|RSMH_DELAS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|160362493|gb|ABX34106.1| S-adenosyl-methyltransferase MraW [Delftia acidovorans SPH-1]
          Length = 309

 Score =  309 bits (791), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 122/311 (39%), Positives = 180/311 (57%), Gaps = 17/311 (5%)

Query: 20  HVPVLLEKVIALL---NPAP-GKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVS 72
           H+ VLL++ +  L      P     +DATFG GG+SR   +       ++A D+DP A+ 
Sbjct: 7   HITVLLDEAVDALLDGAAQPVAGQWVDATFGRGGHSRRILQRLGPDGALLAFDKDPDAIE 66

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              E  R    +FS+    F  L + +P   V GV+ DLGVSS QID  +RGFSF+  GP
Sbjct: 67  ---EAARITDARFSIRHEGFRHLSE-LPAGSVQGVLMDLGVSSPQIDNPERGFSFRFEGP 122

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ-SAPFQTTQD 190
           LDMRM  + G S +D + +A+ + +  ++   GEE+ A  IA AIV RR+   P + T +
Sbjct: 123 LDMRMDTTRGQSVADWLAEADAQQIAEVIRDYGEERFAGPIAKAIVARRESQGPLRNTAE 182

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L+ L+   V  ++    +PATR+FQALRIF+N E+EEL Q L ++ + L  GG L+V+SF
Sbjct: 183 LAELVAGAV-RTREAGQNPATRTFQALRIFINAELEELEQALEASLRVLAPGGRLVVISF 241

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDR+VK+F A  S +V   R    +   P   +++ +  + P++ +VA N RSRSA 
Sbjct: 242 HSLEDRIVKQFIAKHSKEVY-DRRAPFAVPTPMRLEALGR--IKPSEAEVAANARSRSAV 298

Query: 311 LRAGMRTVERS 321
           +R   RT   +
Sbjct: 299 MRVARRTGVPA 309


>gi|57167704|ref|ZP_00366844.1| S-adenosyl-methyltransferase MraW [Campylobacter coli RM2228]
 gi|57020826|gb|EAL57490.1| S-adenosyl-methyltransferase MraW [Campylobacter coli RM2228]
          Length = 311

 Score =  309 bits (791), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 97/302 (32%), Positives = 152/302 (50%), Gaps = 11/302 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76
            H+PVLL +V            LD T G GG+S S  K   N+  IA D+D  A+   ++
Sbjct: 4   PHIPVLLNEVNQAFEKLNSGYFLDCTLGFGGHSESLLKDHPNLKLIACDQDKEALEFSKK 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + D+K++     + FSQ+ D +    ++   G++ D+GVSS Q+D   RGF+      L
Sbjct: 64  RLHDFKDRTEFVLSNFSQILDQISHDKLNDLKGILADIGVSSYQLDNNKRGFNLHSD-FL 122

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+    ISA +++N    + L+ I    GE      IA  I + RQ    ++ ++L 
Sbjct: 123 DMRMNQDVKISAFELINNYTQEQLSDIFKKYGELNDGYFIAQKICQERQKNKIKSAKELY 182

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I KT     +  +  AT  FQA+RI VN E+E L   L   EK      +L ++ FHS
Sbjct: 183 EIIGKT--KQNHRSVSKATLVFQAIRIEVNQELEVLKNFLEKLEKIKLKNCILAIICFHS 240

Query: 253 LEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           LEDR+VK +F   +   +            + ++ + I KK + P++E++  N RS  AK
Sbjct: 241 LEDRIVKNYFKKWAKNCICDERAFRCECGNNHSLGEIINKKAITPSKEEIMINSRSSCAK 300

Query: 311 LR 312
           +R
Sbjct: 301 MR 302


>gi|160878432|ref|YP_001557400.1| S-adenosyl-methyltransferase MraW [Clostridium phytofermentans
           ISDg]
 gi|263433271|sp|A9KS30|RSMH1_CLOPH RecName: Full=Ribosomal RNA small subunit methyltransferase H 1;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase 1;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH 1
 gi|160427098|gb|ABX40661.1| S-adenosyl-methyltransferase MraW [Clostridium phytofermentans
           ISDg]
          Length = 366

 Score =  309 bits (791), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 106/331 (32%), Positives = 163/331 (49%), Gaps = 31/331 (9%)

Query: 3   SKSCKTMSSAIHH---TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG- 58
            K   T+   I       G H+ + + +++  L   PG+  LDAT G GG++R   K   
Sbjct: 49  EKYADTIEKVIQKGSTPAGMHISICVNEILEFLQIKPGQKGLDATLGYGGHTREMLKCLE 108

Query: 59  --SNVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLG 112
              ++ ALD DP  +   +E +++     E  ++ Q  F+ + + V + G  D V+ DLG
Sbjct: 109 SQGHMYALDVDPIEIVKTRERLQNLGFGPEILTIKQLNFANIDEVVEEAGLFDFVLADLG 168

Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASR 171
           VSSMQID  DRGFSF+  GPLD+R++   GISA++ +   +  +L  +L    +E  +  
Sbjct: 169 VSSMQIDDPDRGFSFKTDGPLDLRLNPEKGISAAERLKTISQTELQGMLLENSDEPYSEE 228

Query: 172 IAHAIVKR-RQSAPFQTTQDLSSLIQKTVYFSKNNR-----IHPATRSFQALRIFVNNEI 225
           I+ AIV   ++     TT  L  LI K +     N           R+FQALRI VNNE 
Sbjct: 229 ISKAIVNEIKRGNEIDTTTKLRDLISKVLVTIPENEQKEAIKKTCQRTFQALRIDVNNEY 288

Query: 226 EELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF 285
           E L   L      L  GG + +++FHS EDRLVKK F +                   ++
Sbjct: 289 EVLYSFLEKLPNVLAKGGRVAILTFHSGEDRLVKKSFKNL--------------QRAGIY 334

Query: 286 QSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
             ++  V+ P+ E+   N R+RS K+R  ++
Sbjct: 335 SEVSDDVIRPSAEECNRNPRARSTKMRWAIK 365


>gi|75675236|ref|YP_317657.1| methyltransferase [Nitrobacter winogradskyi Nb-255]
 gi|88909206|sp|Q3STT6|RSMH_NITWN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|74420106|gb|ABA04305.1| methyltransferase [Nitrobacter winogradskyi Nb-255]
          Length = 332

 Score =  309 bits (791), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 126/289 (43%), Positives = 170/289 (58%), Gaps = 5/289 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETM 78
           HVPVL  + +A+L P  G V +DATFGAGGYSR+        VI +DRDP A++ G   +
Sbjct: 8   HVPVLGREAVAMLAPRAGGVYVDATFGAGGYSRAILATAETRVIGIDRDPTAIAGGSGLV 67

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV---SSMQIDCGDRGFSFQKSGPLDM 135
            +   +  L +  FS L      +    V   +     SSMQ+D   RGFSF+  GPLDM
Sbjct: 68  EESGGRLILVEDRFSHLAAVCAAQDAAAVDGVVMDVGVSSMQLDEAGRGFSFRLDGPLDM 127

Query: 136 RMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           RMS  G +A++VV +A+  DL  I+ I GEE+++  +A AIV  R+  P  TT+ L+ ++
Sbjct: 128 RMSGHGPTAAEVVARASETDLADIIYIFGEERRSRAVARAIVGARRHGPIATTRALADIV 187

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
            K V  +K + IHPATR+FQALRIFVN E++EL   L +AE+ LK GG L VVSFHSLED
Sbjct: 188 SKVV-RAKPHEIHPATRTFQALRIFVNEELDELIAALAAAERVLKPGGRLAVVSFHSLED 246

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           R+VK F A R       RH       P  F  +TK+ + P  ++V  N 
Sbjct: 247 RIVKNFLAWRGKTGGGSRHRPEIERAPPSFAILTKRPLTPGDDEVQANP 295


>gi|305681071|ref|ZP_07403878.1| S-adenosyl-methyltransferase MraW [Corynebacterium matruchotii ATCC
           14266]
 gi|305659276|gb|EFM48776.1| S-adenosyl-methyltransferase MraW [Corynebacterium matruchotii ATCC
           14266]
          Length = 341

 Score =  309 bits (791), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 115/334 (34%), Positives = 178/334 (53%), Gaps = 27/334 (8%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPA------PGKVILDATFGAGGYSRSFCKMGS--N 60
           M +  +H    HVPVL E+V  LL PA         +ILDAT GAGG+S  F       +
Sbjct: 1   MENTNNH---GHVPVLRERVTELLAPALCNTITNPPIILDATLGAGGHSEYFLTTFPQVH 57

Query: 61  VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD--------------KGVDG 106
           +I LDRD  A++     + D+ ++ +     F      +                +G+ G
Sbjct: 58  IIGLDRDTTALAQAATRLADFGDRITTLHTRFDDFPTAIQAAADAGNATCQAALTEGISG 117

Query: 107 VVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGE 165
            +FDLGVSSMQ+D  +RGF+++   PLDMRM+ S GI+A++++N     DLTRIL   G+
Sbjct: 118 ALFDLGVSSMQLDQVNRGFAYRVDAPLDMRMNNSEGITAAEILNTYPHGDLTRILKTYGD 177

Query: 166 EKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNE 224
           E+ AS+IA AI++ R+ APF T+  L  L+  T+  + +    HPA R+FQALRI VN E
Sbjct: 178 ERFASKIATAIIREREHAPFTTSARLVELLYNTIPAATRRTGGHPAKRTFQALRIEVNQE 237

Query: 225 IEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV 284
           +  +   L     AL  GG  + +++ SLED+++KK+FA  +         +    + A 
Sbjct: 238 LAAITNVLPRIADALIPGGRAVFMAYQSLEDKIIKKYFAEITTSKTPRGLPMELPEYAAK 297

Query: 285 FQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318
           F+ +T+     T  ++A N R+   ++RA  +  
Sbjct: 298 FRLVTRGAEKATPAEIADNSRAAPVRVRAIEKLA 331


>gi|330813725|ref|YP_004357964.1| rRNA small subunit methyltransferase H [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327486820|gb|AEA81225.1| rRNA small subunit methyltransferase H [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 333

 Score =  309 bits (791), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 108/308 (35%), Positives = 166/308 (53%), Gaps = 8/308 (2%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCG 74
           +  H PV+L +VI  L P     I+D TFG GGYS+   +   +  V+ +DRDP      
Sbjct: 1   MNPHYPVMLNEVITSLEPRSKTTIVDCTFGCGGYSQKILETFPDCKVVGIDRDPSVQEFA 60

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
               + +K +F      FS L++ +      +   VFD G+SS Q+D  DRGFSF  +  
Sbjct: 61  TILEKKFKNRFFFINDKFSNLEEIINKHKDEIGSFVFDFGISSFQLDNHDRGFSFNSNIK 120

Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           LDMRM  + ISA +++N+A+++DL  I+ I GE+K   +IA  IV+ R   P  +TQDL 
Sbjct: 121 LDMRMGKNKISAYELLNEASLEDLNSIIKIFGEDKDHKKIAKEIVRTRDIKPIHSTQDLC 180

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           + I K    +K  + +P+T++FQA+R+ VN E+ E+   L    K      ++  V+FHS
Sbjct: 181 NAILKA-KGNKYFKKNPSTKTFQAIRMIVNQELSEIFNSLTRVIKICNPDTIVTAVTFHS 239

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV---FQSITKKVVVPTQEDVAFNRRSRSA 309
           LEDR+VKK F             IP+          Q +  + + P+++++  N RSRSA
Sbjct: 240 LEDRIVKKIFNISKDSDQNPSRYIPTTHQEKKETFIQRVNNRALKPSEQEIVSNPRSRSA 299

Query: 310 KLRAGMRT 317
           KLR+  + 
Sbjct: 300 KLRSATKI 307


>gi|88606985|ref|YP_505272.1| S-adenosyl-methyltransferase MraW [Anaplasma phagocytophilum HZ]
 gi|123495035|sp|Q2GK29|RSMH_ANAPZ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|88598048|gb|ABD43518.1| S-adenosyl-methyltransferase MraW [Anaplasma phagocytophilum HZ]
          Length = 295

 Score =  308 bits (790), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 127/305 (41%), Positives = 180/305 (59%), Gaps = 23/305 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQETM 78
           H PVLL +++ LL+P  G V +DATFG GGYSR   +     V+A+D+DP A    Q   
Sbjct: 4   HRPVLLNEMLELLSPKDGAVYVDATFGGGGYSRGILERAKCTVLAIDQDPIASEFYQSLH 63

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
             +  +   F + FS+L++ +     +   GVVFD+GVSSMQ+   DRGFSF K GPLDM
Sbjct: 64  SQFPGRVHFFLSKFSRLREALQHFDHNQVDGVVFDVGVSSMQLSDPDRGFSFMKEGPLDM 123

Query: 136 RMS---CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ-SAPFQTTQDL 191
           RM        SA+  VN  + KD+  ++   G E+ + R+  AI+  R+ +   + T DL
Sbjct: 124 RMDMLRSQSKSAATFVNSLSEKDMADVIFYYGGERLSRRVTRAIISARESNNKIRNTSDL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + +I+  V  SK N I PATR+FQA+RI+VN+E+EEL  GL +A + +  GG +IV SFH
Sbjct: 184 AKIIRSVVPRSKANPIDPATRTFQAIRIWVNDELEELKAGLEAASQIVGVGGKIIVTSFH 243

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+VK  F +   K                FQ I KK + PT+++++ N RSRSAKL
Sbjct: 244 SLEDRIVKHKFNALREKG---------------FQLINKKAIKPTEKEISENTRSRSAKL 288

Query: 312 RAGMR 316
           R  ++
Sbjct: 289 RGIVK 293


>gi|296125293|ref|YP_003632545.1| S-adenosyl-methyltransferase MraW [Brachyspira murdochii DSM 12563]
 gi|296017109|gb|ADG70346.1| S-adenosyl-methyltransferase MraW [Brachyspira murdochii DSM 12563]
          Length = 311

 Score =  308 bits (790), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 97/300 (32%), Positives = 168/300 (56%), Gaps = 16/300 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H PV+L++V++ + P   K+++DAT G GG++++   +   V + +RD   +   +  ++
Sbjct: 20  HTPVMLKEVLSYI-PENAKIVIDATLGEGGHTKAMLDLNLEVHSFERDSTILDIAKRRLK 78

Query: 80  DYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
           DY   F  +  T+ ++ + + +K     D +++DLGVS       +RGFSF+ +  LDMR
Sbjct: 79  DY-PNFHYYNNTYDKMMECLDEKVIGNADFMLYDLGVSLFHFKKAERGFSFKDNTMLDMR 137

Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
           +  +  SA DV+N  + ++L R+    GE   A ++A  IVK R     +T+++L S+I 
Sbjct: 138 LGINEKSAYDVINGYSEEELERVFRDYGELSNARKMARIIVKERDKRKIETSKELESIIF 197

Query: 197 K-TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
             T    +  +IHPAT  FQA+RI VN+E+  L + + +    LK  G+ +++S+HSLED
Sbjct: 198 HNTDKSQRYGKIHPATLVFQAIRIEVNDELNILEKSILNIPNILKNNGVAVIISYHSLED 257

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           R+VK+FF               +     +F+ +  KV +PT +++  N  SRSAK+RA  
Sbjct: 258 RIVKRFFKENEK----------TKNKDGIFKLLNNKVKLPTNDEIKSNPASRSAKMRAVQ 307


>gi|332295500|ref|YP_004437423.1| Ribosomal RNA small subunit methyltransferase H [Thermodesulfobium
           narugense DSM 14796]
 gi|332178603|gb|AEE14292.1| Ribosomal RNA small subunit methyltransferase H [Thermodesulfobium
           narugense DSM 14796]
          Length = 298

 Score =  308 bits (790), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 110/309 (35%), Positives = 172/309 (55%), Gaps = 26/309 (8%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFA 70
           +++   H+PVLL +V+   N APGKV++D T GAGG+S +F K    G  ++  D+D  A
Sbjct: 3   NYSKDIHIPVLLNEVLENSNLAPGKVVVDGTIGAGGHSFNFLKKILPGGFLLGFDKDIEA 62

Query: 71  VSCGQETMRDYKEQ--FSLFQATFSQL---QDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125
           V    E +    ++  F++F   F       +++P    D    DLG+S+MQI   +RGF
Sbjct: 63  VKLAVEKLSSTFDRNSFTIFNDKFENFVKYLNFLPYGKFDLFFLDLGLSTMQIKESNRGF 122

Query: 126 SFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           SF K   LDMRM     ++ASD +N A+ +++  +    GEE ++ ++A  I  RR+  P
Sbjct: 123 SFMKDEKLDMRMDLKEKMTASDWLNSASEEEMEEVFRKYGEEPKSRKLAKMISLRRREKP 182

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           F++T DL+ L++K   + +    HPATR FQA+RI +N+EIE L   LR A   + + G 
Sbjct: 183 FESTMDLAQLVKKIYPYGRR---HPATRIFQAIRIVINDEIEHLEATLREATNHINSLGR 239

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           +IV+SFHS EDR+VK  F +   +                 + ITKK ++ ++ +   N 
Sbjct: 240 IIVISFHSGEDRVVKWTFKNLEKEG--------------RGRVITKKPIIASESETKENP 285

Query: 305 RSRSAKLRA 313
            +RSAK+R 
Sbjct: 286 SARSAKMRV 294


>gi|301633398|gb|ADK86952.1| S-adenosyl-methyltransferase MraW [Mycoplasma pneumoniae FH]
          Length = 308

 Score =  308 bits (790), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 95/307 (30%), Positives = 155/307 (50%), Gaps = 12/307 (3%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQ 75
             H  VLL++VI  LN       LD T G GG+S+   +      +   D D  +++   
Sbjct: 5   QPHKSVLLDEVIHNLNIKGDGNYLDLTVGFGGHSQHILEQLTTGTLTGNDMDKDSITFCT 64

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E  +D K+   L    F+   +++    V   DG++ DLGVSS Q+D  +RGFSF+ +GP
Sbjct: 65  ELFKD-KKNVVLVHDNFANFFNHLKQLKVTKFDGILIDLGVSSYQLDKPERGFSFKHAGP 123

Query: 133 LDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            DMRM  S    +A D++ + + ++LT +L   GE      IA A+     +    TT +
Sbjct: 124 FDMRMHQSDRVPTALDILERLSEEELTHVLKKFGEIAHPKPIAKALKTLINNIKNPTTVE 183

Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           ++  ++     F K    +   + FQA+RI++N E+E L   L+   K L   G  +V+ 
Sbjct: 184 VAETVKAAASNFEKYKSRNYLAKVFQAIRIYLNRELESLEIVLQHIPKLLNNKGRFLVIV 243

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLE++LV+ +    +  V      +        F+ ITKK ++PT++++  N R+RSA
Sbjct: 244 FHSLEEKLVRNYIFKLTHFVQPPELPVKLT---PPFELITKKPILPTEQEIKTNPRARSA 300

Query: 310 KLRAGMR 316
           KL    +
Sbjct: 301 KLFVIEK 307


>gi|288574844|ref|ZP_06393201.1| S-adenosyl-methyltransferase MraW [Dethiosulfovibrio peptidovorans
           DSM 11002]
 gi|288570585|gb|EFC92142.1| S-adenosyl-methyltransferase MraW [Dethiosulfovibrio peptidovorans
           DSM 11002]
          Length = 332

 Score =  308 bits (790), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 122/309 (39%), Positives = 178/309 (57%), Gaps = 25/309 (8%)

Query: 19  DHVPVLLEKVIALLN-PAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQ 75
           +HVPV+LE+V+  L        I+DAT G GGYS +      G NV  +DRDP A++   
Sbjct: 4   EHVPVMLEEVLEYLKKTGSSGPIVDATLGLGGYSEAILARIEGVNVFGIDRDPQALTMAS 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E +  + ++F   +  FS L+  + D     V GVVFDLGVS+MQI   +RGFSF+++GP
Sbjct: 64  ERLSPFGKRFIPIKGNFSDLKGLLEDIDGIPVGGVVFDLGVSNMQISLPERGFSFRENGP 123

Query: 133 LDMRMSCS--GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQTTQ 189
           LDMRM+    G SA+D+V +    +L+ I    GEE+ A  IA +IV+ R+   P + T 
Sbjct: 124 LDMRMNHEDGGESAADMVRELTAPELSEIFRKYGEERFAWPIAKSIVRYREKSGPIEDTD 183

Query: 190 DLSSLIQKTVYFS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            L  +I+K +     +  + HPA + FQALRI VN E++ L +GL SA + +  GG+++V
Sbjct: 184 TLVEVIRKALPAPVMRKAKGHPARKVFQALRIAVNKEMDALDEGLNSALEVISPGGVVVV 243

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           VS+HSLEDR+VK  F     +                   +TKK +VP+  ++  N +SR
Sbjct: 244 VSYHSLEDRIVKWKFRGWKDQGEGT--------------ILTKKALVPSDLEIENNTKSR 289

Query: 308 SAKLRAGMR 316
           SAKLRA  +
Sbjct: 290 SAKLRAFAK 298


>gi|305433210|ref|ZP_07402366.1| S-adenosyl-methyltransferase MraW [Campylobacter coli JV20]
 gi|304443911|gb|EFM36568.1| S-adenosyl-methyltransferase MraW [Campylobacter coli JV20]
          Length = 311

 Score =  308 bits (790), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 97/302 (32%), Positives = 153/302 (50%), Gaps = 11/302 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76
            H+PVLL +V            LD T G GG+S S  K   N+  IA D+D  A+   ++
Sbjct: 4   PHIPVLLNEVNQAFEKLNSGYFLDCTLGFGGHSESLLKDHPNLKLIACDQDKEALEFSKK 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + D+K++     + FSQ+ D +    ++   G++ D+GVSS Q+D   RGF+      L
Sbjct: 64  RLHDFKDRTEFVLSNFSQILDQISHDKLNDLKGILADIGVSSYQLDNNKRGFNLHSD-FL 122

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+    ISA +++N    + L+ I    GE      IA  I + RQ    ++ ++L 
Sbjct: 123 DMRMNQDAKISAFEIINNYTQEQLSDIFKKYGELNDGYFIAQKICQERQKNKIKSAKELY 182

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I KT     +  +  AT  FQA+RI VN E+E L   L   EK      +L ++ FHS
Sbjct: 183 EIIGKT--KQNHRSVSKATLVFQAIRIEVNQELEVLKNFLEKLEKIKLKNCILAIICFHS 240

Query: 253 LEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           LEDR+VK +F   +   +            + ++ + I+KK + P++E++  N RS  AK
Sbjct: 241 LEDRIVKNYFKKWAKNCICDERAFRCECGNNHSLGEIISKKAITPSKEEIMINSRSSCAK 300

Query: 311 LR 312
           +R
Sbjct: 301 MR 302


>gi|157412528|ref|YP_001483394.1| S-adenosyl-methyltransferase MraW [Prochlorococcus marinus str. MIT
           9215]
 gi|262824943|sp|A8G2H7|RSMH_PROM2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|157387103|gb|ABV49808.1| Predicted S-adenosylmethionine-dependent methyltransferase
           [Prochlorococcus marinus str. MIT 9215]
          Length = 300

 Score =  308 bits (790), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 108/316 (34%), Positives = 176/316 (55%), Gaps = 30/316 (9%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLN----PAPGKV-ILDATFGAGGYSRSFCKMGSNV--I 62
           +     +  +H  V+ ++++A L         ++  +DAT G GG+S +  +  S +  I
Sbjct: 3   TDLSDSSFFNHKSVMTDEIMASLEHYPLIHNNQLKGIDATLGGGGHSFNLLRKYSELNII 62

Query: 63  ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGD 122
            LD+DPFA     + + ++K +  +  + F+   D+VP + V  V+ DLGV+S QID   
Sbjct: 63  GLDQDPFARISASKKLDEFKNRIDIRASNFA---DFVPKEKVSFVIADLGVNSNQIDDPK 119

Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI-VKRR 180
           RGFSFQK GPLDMRM+    + A  ++   N KDL  ++   G+E+ + +IA  I +  +
Sbjct: 120 RGFSFQKDGPLDMRMNPLLEVDAEKLIEALNEKDLANLIYKYGDERLSRKIARKIKLDLK 179

Query: 181 QSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
           ++  +  T++L+  I        +  +IHPATR+FQALRI VN EIE L + L++  + L
Sbjct: 180 ENGKYSGTKELAYSIAGCFPPKQRYKKIHPATRTFQALRIAVNKEIEVLEKFLQAVPEWL 239

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
             GG++ ++SFHSLEDRLVK  F +                     +++TKK + P++++
Sbjct: 240 LPGGIISIISFHSLEDRLVKSSFKND-----------------QRLKNLTKKPITPSEQE 282

Query: 300 VAFNRRSRSAKLRAGM 315
           V FN+R+RS KLR   
Sbjct: 283 VEFNKRARSGKLRIAQ 298


>gi|187251661|ref|YP_001876143.1| putative S-adenosylmethionine-dependent methyltransferase
           [Elusimicrobium minutum Pei191]
 gi|263447006|sp|B2KE60|RSMH_ELUMP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|186971821|gb|ACC98806.1| putative S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [Elusimicrobium minutum
           Pei191]
          Length = 293

 Score =  308 bits (789), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 106/306 (34%), Positives = 158/306 (51%), Gaps = 26/306 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H+PVL +++  +L      V +D T G GG+++    +      +I  D+D  AV   + 
Sbjct: 6   HIPVLTKEIGQMLITDINGVYIDGTLGLGGHTKYLLGLLGKEAKIIGFDKDYNAVKMAEA 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            + D   + +    ++      + D     G DGV+ DLG+SS Q+D   RGFSF   GP
Sbjct: 66  NVAD--GRLTAINLSYEAAPKVLKDLKIQGGADGVLLDLGLSSYQLDDASRGFSFMGGGP 123

Query: 133 LDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMR   SG  +A+DVVN    ++L RI    GEE  A   A AIV+ R     +TT +L
Sbjct: 124 LDMRFDISGQKTAADVVNSYTAEELERIFANYGEETNARNAAAAIVRARVDKKIKTTSEL 183

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           ++++   +   +  + H ATR FQALRI VN+E+  + + ++   + LK GG   V++FH
Sbjct: 184 ANILAPVLP--RRGKTHGATRVFQALRIEVNDELGTVERFIKVLPEVLKPGGRAAVITFH 241

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+VK  F   S +                 + + K V+ P  E+V  NRRSRSAKL
Sbjct: 242 SLEDRIVKNIFKQMSAEGE--------------VKLVNKHVIEPEWEEVKNNRRSRSAKL 287

Query: 312 RAGMRT 317
           R   + 
Sbjct: 288 RVAEKI 293


>gi|68535817|ref|YP_250522.1| S-adenosyl-methyltransferase MraW [Corynebacterium jeikeium K411]
 gi|88909195|sp|Q4JWA3|RSMH_CORJK RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|68263416|emb|CAI36904.1| S-adenosyl-methyltransferase [Corynebacterium jeikeium K411]
          Length = 342

 Score =  308 bits (789), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 100/325 (30%), Positives = 172/325 (52%), Gaps = 24/325 (7%)

Query: 20  HVPVLLEKVIALLNP------APGK-VILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70
           H PV+ ++++ L+        AP + VI+D T GAGG+S +F     +  V+ LDRDP A
Sbjct: 7   HTPVMRDRMVELVGLGVNSENAPARPVIVDGTLGAGGHSEAFLDAFPHAIVVGLDRDPNA 66

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVP-------------DKGVDGVVFDLGVSSMQ 117
           ++     +  + ++F  +Q  F  + + +              + G+ G +FDLGVSSMQ
Sbjct: 67  LAEANARLARFGDRFVSYQTRFDGVTEALEDLMEQGKLPASVREHGISGFLFDLGVSSMQ 126

Query: 118 IDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
           +D  +RGF++    PLDMRM  S  ++A++++N  +  ++ RIL   G+E+ A +IA A+
Sbjct: 127 LDQPERGFAYAVDAPLDMRMDPSSPLTAAEILNTYSHGEIARILKTYGDERFAGKIASAV 186

Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           V+ R+  PF+ +  L  L+  T+  + +    HPA R+FQALR+ VN E+E L   +   
Sbjct: 187 VREREKQPFENSARLVELLYATIPAASRRTGGHPAKRTFQALRVEVNAELESLENLIPEI 246

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295
            + L  G + + +S+ SLED++VKK     S         +      A F+  T+     
Sbjct: 247 SRWLHVGAVGVFMSYQSLEDKIVKKALVQLSTSKTPPGLPMELPGMEAEFELRTRGAEKA 306

Query: 296 TQEDVAFNRRSRSAKLRAGMRTVER 320
           ++ ++  N R+   ++RA  R  +R
Sbjct: 307 SEAEIEQNSRAAPVRVRAYSRVSDR 331


>gi|160902330|ref|YP_001567911.1| S-adenosyl-methyltransferase MraW [Petrotoga mobilis SJ95]
 gi|262824808|sp|A9BHH9|RSMH_PETMO RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|160359974|gb|ABX31588.1| S-adenosyl-methyltransferase MraW [Petrotoga mobilis SJ95]
          Length = 286

 Score =  308 bits (789), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 105/302 (34%), Positives = 161/302 (53%), Gaps = 30/302 (9%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPFAVSCGQETMRD 80
           ++E+V++ +      + +D T G GG+ ++        + VI +D D   +   +E ++D
Sbjct: 1   MVEEVLSYMITNKDGIYVDCTAGEGGHIKAILGYTNNKAKVIGVDVDYEVLEIAEERLKD 60

Query: 81  YKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
             +   L ++++  +   +   G   VDG + DLGVS+ Q+   +RGFSF K  PLDMRM
Sbjct: 61  LSDNVVLIKSSYKNIDMVLRGLGIDKVDGFLMDLGVSTFQLKGENRGFSFTKDEPLDMRM 120

Query: 138 S-CSGISASDVVNQANVKDLTRILGILGEEK-QASRIAHAIVKRRQSAPFQTTQDLSSLI 195
              S   A+ +VN  + +DL RI+   GEEK  A  I+ +IVK R   P  TTQ+L   I
Sbjct: 121 DVQSEKDAAYIVNNYSQEDLRRIIFEYGEEKRFAHSISKSIVKNR---PINTTQELVDAI 177

Query: 196 QKTVYFSK--NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           +K +  S+      H AT++FQALRI VN E++ + + L   E  LK    + V++FHSL
Sbjct: 178 RKGLPASQVHERHRHFATKTFQALRIEVNEELKNIEETLSKFESFLKVKARVAVITFHSL 237

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           EDR+VK FF +                    +  +T K ++PTQE++  N RSRSAKLR 
Sbjct: 238 EDRIVKNFFKNNE-----------------RYNFLTPKPILPTQEEIKHNPRSRSAKLRV 280

Query: 314 GM 315
             
Sbjct: 281 VE 282


>gi|88909214|sp|Q4FQ05|RSMH_PSYA2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 334

 Score =  308 bits (789), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 113/329 (34%), Positives = 173/329 (52%), Gaps = 31/329 (9%)

Query: 20  HVPVLLEKVIALL----------------NPAPGKVILDATFGAGGYSRSFCKMGSN--- 60
           H  VLL++ +A +                +     + +DATFG GG+SR      ++   
Sbjct: 10  HDAVLLQEAVAAVLGVKALPKQTDDESQNSLQASGIYVDATFGRGGHSRLLLSQLADNAT 69

Query: 61  VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQ 117
           +I  D+DP A+   QE +     +  +   +F+ L D +   G   VDG++ DLG+SS Q
Sbjct: 70  LIVFDKDPTAIRVAQE-LASTDSRVQVVHDSFATLTDSLAAMGITQVDGLMADLGISSPQ 128

Query: 118 IDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
           ID G RGFSF + G +DMRM  S G S ++ +   +   L  +L   GEE+ + RIA AI
Sbjct: 129 IDDGSRGFSFMRDGAVDMRMDTSRGQSVAEWLETVDDDTLANVLYDFGEERHSRRIARAI 188

Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236
              +Q   +++T +L+ +I+      +  + HPAT+SFQA+RIF+NNE+ ++   L  + 
Sbjct: 189 ---KQMDRYKSTLELAEVIKVAHPNWQRGK-HPATQSFQAMRIFINNELGDVDNFLEQSI 244

Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK-KVVVP 295
             LK GG L V+SFHSLEDR +K+F    S         +P    P   +  +K K V P
Sbjct: 245 PILKVGGQLAVISFHSLEDRRIKQFLQRHSKGQYPEDENLP--MPPKRPRYFSKPKRVGP 302

Query: 296 TQEDVAFNRRSRSAKLRAGMRTVERSIED 324
           ++ +++ N RSRSA LR   RT    + D
Sbjct: 303 SKAEISNNPRSRSAWLRMATRTDTDYLAD 331


>gi|328873505|gb|EGG21872.1| hypothetical protein DFA_01758 [Dictyostelium fasciculatum]
          Length = 387

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 113/323 (34%), Positives = 181/323 (56%), Gaps = 20/323 (6%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRD 67
           S+   +  G H PV++ +VI  L+   G   +DATFG GG++ +      GS VIA+DRD
Sbjct: 48  STLRFNNYGIHKPVMVNEVIDRLHLKDGHCYIDATFGLGGHTLNILDRCKGSFVIAVDRD 107

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD-----GVVFDLGVSSMQIDCGD 122
           P       +    Y+++       FS L   + ++G+D     GV+ D G SS+Q+D  D
Sbjct: 108 PKIFELTAKIRETYQDRLITLHGNFSNLSQLLKERGLDTLKISGVLMDFGCSSLQLDSPD 167

Query: 123 RGFSFQKS--GPLDMRMS-----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175
           RGFSF+K   GPLDMRM+        ++A+D++N  + + L  I+   GEE+   ++AH 
Sbjct: 168 RGFSFRKDFDGPLDMRMNNTDTSTQRLTATDILNTFSNQQLRDIMYYYGEERHTLKVAHE 227

Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           I++RRQ    + T  L  +I+  + +     +   +R F++LR+FVN+E  E+ +G+R A
Sbjct: 228 IIRRRQYERIEKTSQLVDIIESCIPYP--AAMKSISRIFRSLRMFVNDETGEIYRGMREA 285

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI-TKKVVV 294
           EK L  GG L+V+SFHS+EDR+ K+FF +R       R  +    H   F+ +   + + 
Sbjct: 286 EKILAPGGNLVVISFHSIEDRIAKRFFRNR---CAVKRSTLTPLQHDPSFEYVDGSQPLF 342

Query: 295 PTQEDVAFNRRSRSAKLRAGMRT 317
           PT E++ +N RS+ A +R+  RT
Sbjct: 343 PTDEEIEWNSRSKPAIVRSATRT 365


>gi|307544543|ref|YP_003897022.1| S-adenosyl-methyltransferase MraW [Halomonas elongata DSM 2581]
 gi|307216567|emb|CBV41837.1| S-adenosyl-methyltransferase MraW [Halomonas elongata DSM 2581]
          Length = 318

 Score =  307 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 121/320 (37%), Positives = 171/320 (53%), Gaps = 16/320 (5%)

Query: 9   MSSAIHHTIGD---HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVI 62
           MSS           H  VLL+  +  L   P    LD TFG GG+SR+  +       ++
Sbjct: 1   MSSPASEQPSRGFRHASVLLDGAVETLVHDPSGRYLDGTFGRGGHSRAILERLSPQGRLL 60

Query: 63  ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQI 118
           A+DRDP A+   QE       +F+  +  F++L D+         +DG++ D+GVSS Q+
Sbjct: 61  AIDRDPQAI---QEAAAIEDARFAFERGDFARLGDFARAHDLHGKLDGILLDVGVSSPQL 117

Query: 119 DCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177
           D  +RGFSF + GPLDMRM    G SA+  + +A+  ++ R+    GEE+ A R+A AIV
Sbjct: 118 DDPERGFSFLRDGPLDMRMDPEHGESAAAWIARADEGEIARVFKTYGEERFARRLARAIV 177

Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
            RR    F  T DL+ +I+      +  + HPATR+FQALRI VN E+E+L   L +A +
Sbjct: 178 ARRGERAFTRTADLAEVIKAAHPAWEKGK-HPATRAFQALRIQVNGELEQLDLALEAALE 236

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS-ITKKVVVPT 296
           AL  GG L+V+SFHSLEDR VK+F          +   IP        +     K   PT
Sbjct: 237 ALAPGGHLVVISFHSLEDRRVKRFIRDHVRGDTHLPRGIPLRDDQIQRRLEALGKARRPT 296

Query: 297 QEDVAFNRRSRSAKLRAGMR 316
            E+V  N R+RSA +RA  +
Sbjct: 297 SEEVEDNPRARSAVMRAARK 316


>gi|310287093|ref|YP_003938351.1| S-adenosyl-methyltransferase MraW [Bifidobacterium bifidum S17]
 gi|309251029|gb|ADO52777.1| S-adenosyl-methyltransferase MraW [Bifidobacterium bifidum S17]
          Length = 370

 Score =  307 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 107/307 (34%), Positives = 159/307 (51%), Gaps = 11/307 (3%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           H PVLLE+ ++L+ PA   PG + +D T G  G++ +F K      V+ +DRD  A++  
Sbjct: 8   HQPVLLEQCVSLVAPALQDPGSIAVDCTLGLAGHTIAFLKAAPQARVLGIDRDAEALAMA 67

Query: 75  QETMRDYK--EQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQK 129
            E +      ++F    A F      + D+G+D    V  DLG+SS+QID  DRGFS+  
Sbjct: 68  TERIAGEGLSDRFIPVHAAFDAFGQVLDDQGIDRVNAVFMDLGLSSLQIDETDRGFSYAH 127

Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM  S  ++A  V+ +   ++L RI    GEE+ + +IA  IV+RR   P  T+
Sbjct: 128 DAPLDMRMDVSQPLTAQRVLAEYPERELVRIFRAYGEERFSRQIAREIVRRRAQEPLTTS 187

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L+ L+ + V  +     +PA R FQALRI VN E+++LA  L      L   G L+V 
Sbjct: 188 AQLNRLVDEVVPQAHRPAGNPAKRVFQALRIEVNGELDKLAGTLPQIACRLAPNGRLVVE 247

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           S+HSLED+ VK F              +  +     F  +T+  V    +++A N RS S
Sbjct: 248 SYHSLEDKTVKSFMNEGLRVDAPADMPVIPDDAQPFFAPLTRGAVQSGPDEIAANPRSAS 307

Query: 309 AKLRAGM 315
            +LR   
Sbjct: 308 VRLRGVE 314


>gi|300780824|ref|ZP_07090678.1| S-adenosyl-methyltransferase MraW [Corynebacterium genitalium ATCC
           33030]
 gi|300532531|gb|EFK53592.1| S-adenosyl-methyltransferase MraW [Corynebacterium genitalium ATCC
           33030]
          Length = 333

 Score =  307 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 107/317 (33%), Positives = 168/317 (52%), Gaps = 20/317 (6%)

Query: 20  HVPVLLEKVIALLNPA-----PGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVS 72
           H+PV+ +++  LL PA     P  VI+D T GAGG++  F        VI +DRD  A++
Sbjct: 13  HIPVMRDRMGELLRPAVERFGPHAVIVDGTLGAGGHTEYFLDTFPEASVIGIDRDGAALA 72

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD-----------KGVDGVVFDLGVSSMQIDCG 121
              E +  + ++F+  +  F  L + + D            G+ G  FDLGVSSMQ+D  
Sbjct: 73  QAGERLARFGDRFAPVRGRFDCLAESLRDGTGPVFETVRAHGLAGAFFDLGVSSMQLDQE 132

Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGF+++   PLDMRM  S GI+A+DV+N  +  DL  +L   G+E+ A +IA A++  R
Sbjct: 133 ERGFAYRVDAPLDMRMDPSAGITAADVLNTYSHGDLAHVLKAYGDERFAGKIASAVLDER 192

Query: 181 QSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
           + APF T+  L  L+ + +  + +    HPA R+FQALR+ VN E++ L   L    +AL
Sbjct: 193 EKAPFDTSARLVELLYRVIPAATRRTGGHPAKRTFQALRVEVNRELDALTNVLPMVAEAL 252

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
             GG  + +S+ S ED+LVK+ F   +                A F+ +T      +  +
Sbjct: 253 GPGGRAVFMSYQSHEDKLVKRAFTEWTTSKTPAGLPTELPGMAAEFRMVTHGAEKASVAE 312

Query: 300 VAFNRRSRSAKLRAGMR 316
           V  NRR+   ++RA  +
Sbjct: 313 VEVNRRAAPVRVRAVEK 329


>gi|296269378|ref|YP_003652010.1| S-adenosyl-methyltransferase MraW [Thermobispora bispora DSM 43833]
 gi|296092165|gb|ADG88117.1| S-adenosyl-methyltransferase MraW [Thermobispora bispora DSM 43833]
          Length = 327

 Score =  307 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 118/298 (39%), Positives = 176/298 (59%), Gaps = 10/298 (3%)

Query: 17  IGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAV 71
           +  HVPV+L +V+ LL PA   P  V++DA  G GG++ +  K     ++I +DRDP A+
Sbjct: 14  VNGHVPVMLGRVLELLAPALTGPDPVLVDANVGLGGHAEALLKAHPALHLIGIDRDPTAI 73

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQ 128
                 +  Y E+ +L  A   +L   +   G   ++G +FDLG+SS QID   RGF++ 
Sbjct: 74  ERSTARLAPYAERVTLVHAVSDELPTILSRAGRPRINGALFDLGLSSPQIDEAARGFAYS 133

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
              PLDMRM     ++A+DVVN  +V +LTRIL   GEE+ A+RIA+AI + R  +P  T
Sbjct: 134 YDAPLDMRMDPGQELTAADVVNGYSVAELTRILREYGEERFAARIANAIARERARSPITT 193

Query: 188 TQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           T+ L+ L++  +  + +    +PA R+FQALRI VN E+  L + L +A  AL  GG ++
Sbjct: 194 TKRLADLVRDAIPAATRRTGGNPAKRTFQALRIEVNQELAALERALPAALDALAVGGRVV 253

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           V+++HSLEDRLVK+  A RS +       +P  AH   F+ +TK   +P  E+VA N 
Sbjct: 254 VLAYHSLEDRLVKRVLAERSTESGPPGLPVPLEAHLPTFRLLTKGAELPDDEEVARNP 311


>gi|225021917|ref|ZP_03711109.1| hypothetical protein CORMATOL_01949 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945304|gb|EEG26513.1| hypothetical protein CORMATOL_01949 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 341

 Score =  307 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 115/334 (34%), Positives = 178/334 (53%), Gaps = 27/334 (8%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPA------PGKVILDATFGAGGYSRSFCKMGS--N 60
           M +  +H    HVPVL E+V  LL PA         +ILDAT GAGG+S  F       N
Sbjct: 1   MENTNNH---GHVPVLRERVTELLAPALCNTTTNPPIILDATLGAGGHSEYFLTTFPQVN 57

Query: 61  VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD--------------KGVDG 106
           +I LDRD  A++     + ++ ++ +     F      +                +G+ G
Sbjct: 58  IIGLDRDTTALAQAATRLANFGDRITTLHTRFDDFPTAIQAAADAGNATCQAALTEGISG 117

Query: 107 VVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGE 165
            +FDLGVSSMQ+D  +RGF+++   PLDMRM+ S GI+A++++N     +LTRIL   G+
Sbjct: 118 ALFDLGVSSMQLDQVNRGFAYRVDAPLDMRMNNSEGITAAEILNTYPHGNLTRILKTYGD 177

Query: 166 EKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNE 224
           E+ AS+IA AI++ R+ APF T+  L  L+  T+  + +    HPA R+FQALRI VN E
Sbjct: 178 ERFASKIATAIIREREHAPFTTSARLVELLYNTIPAATRRTGGHPAKRTFQALRIEVNQE 237

Query: 225 IEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV 284
           +  +   L     AL  GG  + +++ SLED+++KK+FA  +         I    + A 
Sbjct: 238 LAAITNVLPRIADALIPGGRAVFMAYQSLEDKIIKKYFAEITTSKTPRGLPIELPEYAAK 297

Query: 285 FQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318
           F+ +T+     T  ++A N R+   ++RA  +  
Sbjct: 298 FRLVTRGAEKATPAEIADNSRAAPVRVRAIEKLA 331


>gi|255558644|ref|XP_002520347.1| s-adenosyl-methyltransferase mraw, putative [Ricinus communis]
 gi|223540566|gb|EEF42133.1| s-adenosyl-methyltransferase mraw, putative [Ricinus communis]
          Length = 405

 Score =  307 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 108/353 (30%), Positives = 167/353 (47%), Gaps = 37/353 (10%)

Query: 2   ESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV 61
           E +  ++     +    +HVPVLL +VI + +    +  +D T GA G+S +  K    +
Sbjct: 53  EKRRTRSDKEFEYKENDNHVPVLLGEVIDVFSSLHLRSFVDCTLGAAGHSSAIIKGHPEL 112

Query: 62  ---IALDRDPFAVSCGQETMRDYKE------QFSLFQATFSQLQDYVPDK-------GVD 105
              + +D DP A +  +  + D         +   F + F  ++  + +        GVD
Sbjct: 113 ENYVGMDVDPVAHAKARACIDDLMHSHSCHLKVHTFLSNFKHVKPLLAEVDPNFFNSGVD 172

Query: 106 GVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILG 164
            ++ DLG+SSMQ++  +RGFS   +GPLDMRM     + A D++N     ++ R+L   G
Sbjct: 173 AILMDLGMSSMQVNNPERGFSVLANGPLDMRMDPQASLKAEDILNSWPDTEVGRVLREYG 232

Query: 165 EEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNR---IHPATRSFQALRIFV 221
           EE     + + IV+ R      TT DL  LI+   + ++  R   I  ATR FQALRI V
Sbjct: 233 EESNWHLLQNKIVQARLRGGLHTTGDLVDLIRNMTHGTRGGRQGWIKTATRVFQALRIAV 292

Query: 222 NNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA- 280
           N+E+  L + L +  + L  GG L V+SFHSLEDR+VK+ F                   
Sbjct: 293 NDELGTLEKTLNACFECLAPGGRLAVISFHSLEDRIVKQTFLKVIETGRGDGDADEEERF 352

Query: 281 ----------------HPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
                                + +TK+ V P++E+   NRRSRSAKLR   + 
Sbjct: 353 GRDSRNSEEMWIKSVVQGRNGRILTKRPVTPSEEEERLNRRSRSAKLRVVEKV 405


>gi|87123572|ref|ZP_01079423.1| methyltransferase [Synechococcus sp. RS9917]
 gi|86169292|gb|EAQ70548.1| methyltransferase [Synechococcus sp. RS9917]
          Length = 305

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 107/308 (34%), Positives = 161/308 (52%), Gaps = 31/308 (10%)

Query: 20  HVPVLLEKVIALLNPAPG-----KVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVS 72
           HVPVL + ++  L           ++LDAT G GG+SR   +     ++I LD+D  A +
Sbjct: 14  HVPVLADVLLQALQEHADPRWQQGLLLDATLGGGGHSRLLLEHYPGLHLIGLDQDSTARA 73

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              E +    E+  +    F+    Y P++ V  ++ DLGVSS Q+D  +RGFSF+ +GP
Sbjct: 74  AAAEHLLPCAERVRIVATNFA---TYRPEEPVALLLADLGVSSPQLDVAERGFSFRHNGP 130

Query: 133 LDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTTQ 189
           LDMRM+  G   +A++++ +    DL  ++   GEE+ + RIA  I         +  T 
Sbjct: 131 LDMRMNPEGGGETAAELIARLEESDLADLIYAYGEERLSRRIARRIKADLAAQGAYAGTA 190

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L+  I        +  RIHPATR+FQALRI +N+E+  L + L +A   L+ GGLL ++
Sbjct: 191 ALAYAIAGCYPPKARRGRIHPATRTFQALRIAINDELGVLDKLLSAAPDWLQPGGLLAII 250

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDR VK  F                       + IT++ +V ++++   N RSRS
Sbjct: 251 SFHSLEDRRVKTAF-----------------LQDQRLERITRRPLVASEQEQERNPRSRS 293

Query: 309 AKLRAGMR 316
           AKLR   R
Sbjct: 294 AKLRIARR 301


>gi|257068256|ref|YP_003154511.1| S-adenosyl-methyltransferase MraW [Brachybacterium faecium DSM
           4810]
 gi|256559074|gb|ACU84921.1| S-adenosyl-methyltransferase MraW [Brachybacterium faecium DSM
           4810]
          Length = 331

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 117/317 (36%), Positives = 175/317 (55%), Gaps = 13/317 (4%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           HVPVLL+  + LL PA    G V +DAT G GG++ +        +++ +DRDP A++  
Sbjct: 14  HVPVLLDTSVQLLAPALQDAGAVHVDATLGMGGHAAAVLHAAPRAHLVGIDRDPQALALA 73

Query: 75  QETM--RDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
           +E +      E+ +L  AT+ Q+ + + D    G  GV+ DLG+SS QID  DRGFS+  
Sbjct: 74  RERLDREGVGERATLVHATYDQIPEVLEDLGLPGAHGVMMDLGLSSFQIDTADRGFSYAV 133

Query: 130 SGPLDMRMSCS--GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
             PLDMRM  S  G +A+D++      ++ RIL  LG+E+ A RIA  +V++R+SAP   
Sbjct: 134 DAPLDMRMDTSSDGPTAADLLRDLPEAEIARILRDLGDERFAKRIARRVVQQRESAPLTR 193

Query: 188 TQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           + +L +L+++ +  + K +  HPA R+FQALRI VN E+E LA  L SA   +  GG ++
Sbjct: 194 SGELVALLERAIPAASKASGGHPAKRTFQALRIAVNEELEILASALESALDCVHVGGRIV 253

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           V S+HS EDRLVK  F  R          +    H   F  + +  +   + +   N R+
Sbjct: 254 VESYHSGEDRLVKTAFTRRIRSSAPPGLPVELEEHKPTFSPLVRGALQADEHERGSNSRA 313

Query: 307 RSAKLRAGMRTVERSIE 323
            S +LRA  RT      
Sbjct: 314 ASVRLRALTRTRPAERA 330


>gi|319760278|ref|YP_004124216.1| S-adenosyl-L-methionine-dependent methyltransferase [Candidatus
           Blochmannia vafer str. BVAF]
 gi|318038992|gb|ADV33542.1| S-adenosyl-L-methionine-dependent methyltransferase [Candidatus
           Blochmannia vafer str. BVAF]
          Length = 330

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 105/318 (33%), Positives = 174/318 (54%), Gaps = 22/318 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            H  VLL + I  LN  P  + +D TFG+GG+SR           +IA D+D  +V  G 
Sbjct: 2   HHKSVLLHEAIEALNIDPSGIYIDGTFGSGGHSRLILSKLTKFGRLIAFDKDHLSVEIG- 60

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +T+ +   +FS+   +FS+  +YV +      ++G++ DLG+   Q+   +RGFSF K G
Sbjct: 61  KTIFNQDSRFSIVHMSFSKAMNYVHNVKLLGSINGILLDLGICENQLFDANRGFSFIKDG 120

Query: 132 PLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM   +G +A+  +  ++ + +T +L  LGEE+   +IA +I+  R+  P   T +
Sbjct: 121 PLDMRMDITTGQTAAQWIAMSSQEHITWVLKNLGEERFCKKIAKSILFHRRIRPIVRTHE 180

Query: 191 LSSLIQKTVYFSKNNR----IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           LS ++   +  S+  +     HPATRSF A+R+ +N E+E +A+ L+     L   G L+
Sbjct: 181 LSKIVSDIIVPSRIKKNSWNKHPATRSFLAIRMHINKELEAIAKVLKDMYNLLSNKGRLV 240

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-------PAVFQSITKKVVVPTQED 299
           ++SF+SLEDRLVK F    S     +  +  + +           F++I K  ++PT+++
Sbjct: 241 IISFNSLEDRLVKHFIYKHSRIFPELPKLALTESQIINIFSSSCQFKNIGK--IIPTKQE 298

Query: 300 VAFNRRSRSAKLRAGMRT 317
           +  N R+RSA LR   + 
Sbjct: 299 IKENIRARSAILRCAEKI 316


>gi|227548905|ref|ZP_03978954.1| S-adenosyl-methyltransferase MraW [Corynebacterium lipophiloflavum
           DSM 44291]
 gi|227079033|gb|EEI16996.1| S-adenosyl-methyltransferase MraW [Corynebacterium lipophiloflavum
           DSM 44291]
          Length = 345

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 108/317 (34%), Positives = 171/317 (53%), Gaps = 20/317 (6%)

Query: 20  HVPVLLEKVIALLNPA-----PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVS 72
           HVPV+ +++  LL PA      G VI+DAT GAGG++  F +   G++VI +DRDP A+ 
Sbjct: 23  HVPVMRDRMADLLAPAVEVFGAGAVIVDATLGAGGHTEHFLRRFPGASVIGVDRDPAALR 82

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD-----------KGVDGVVFDLGVSSMQIDCG 121
              E +  + ++F   QA F  +   + D            GV G +FDLGVSSMQ+D  
Sbjct: 83  DATERLAPFADRFVGVQARFDDIGTAIRDRDGAIFDAARTHGVAGALFDLGVSSMQLDQE 142

Query: 122 DRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGF+++   PLDMRM  +  ++A+DV+N  +  +L RIL   G+E+ A +IA  I+K R
Sbjct: 143 ERGFAYKVDAPLDMRMDPTTTLTAADVLNTYSHGELARILKTYGDERFAGKIASHILKER 202

Query: 181 QSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
           + APF+ +  L  L+ + +  + +    HPA R+FQALRI VN E++ L   +      L
Sbjct: 203 EKAPFERSARLVELLYQAIPAATRRTGGHPAKRTFQALRIEVNGELDALRAVIPVITDLL 262

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
             GG  + +S+ SLED++VK    S +         +      A F+ IT      ++ +
Sbjct: 263 GPGGRAVFMSYQSLEDKIVKNALTSLTTSTTPTGLPMDLPGTAATFRWITHGAEKASEAE 322

Query: 300 VAFNRRSRSAKLRAGMR 316
           +  N R+   ++R   +
Sbjct: 323 IDQNSRAAPVRVRGVEK 339


>gi|326559297|gb|EGE09724.1| S-adenosyl-methyltransferase MraW [Moraxella catarrhalis 7169]
 gi|326568235|gb|EGE18317.1| S-adenosyl-methyltransferase MraW [Moraxella catarrhalis BC8]
 gi|326569935|gb|EGE19982.1| S-adenosyl-methyltransferase MraW [Moraxella catarrhalis BC1]
 gi|326573681|gb|EGE23639.1| S-adenosyl-methyltransferase MraW [Moraxella catarrhalis O35E]
          Length = 330

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 109/326 (33%), Positives = 175/326 (53%), Gaps = 25/326 (7%)

Query: 9   MSSAIH-HTIGDHVPVLLEKVIAL------LNP---APGKVILDATFGAGGYSRSFCKMG 58
           MS+ I       H  VLL + +A+      LN        V +DATFG GG+S+   +  
Sbjct: 1   MSNTISTSDEFSHTTVLLPETVAMVLGVKQLNDVTSKVSGVYVDATFGRGGHSQLLLEYL 60

Query: 59  S---NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLG 112
           +    +   D+DP A++   +++     +  +   +F+ L   +   G+D   G++ DLG
Sbjct: 61  APEATLAVFDKDPEAIAVA-KSLAAQDTRIKVVHDSFAHLTKNLQALGIDKIDGLMADLG 119

Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASR 171
           VSS Q+D G RGFSF + G +DMRM  + G   S+ + + +  +L  +L   GEE+ + +
Sbjct: 120 VSSPQLDDGTRGFSFMRDGVVDMRMDTTRGEPVSEWLQRVSADELADVLYEYGEERHSRK 179

Query: 172 IAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQG 231
           IA AI   +    + +T+ L+ +I++     +  + HPAT+SFQA+RIF+NNE+ ++   
Sbjct: 180 IARAI---KSMQNYTSTRQLAEVIKQAHPAWQKGK-HPATQSFQAMRIFINNELGDVEAF 235

Query: 232 LRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITK 290
           L  +   LKAGG+L V+SFHSLEDRL+K+F    S G+      +      P  F     
Sbjct: 236 LAQSIGVLKAGGMLAVISFHSLEDRLIKQFLQRHSRGQYEEDARLPIIPKRPKYFGK--P 293

Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMR 316
           K + P+ ++V  N R+RSA LR  +R
Sbjct: 294 KRIGPSDQEVKANPRARSAWLRGAVR 319


>gi|266625237|ref|ZP_06118172.1| S-adenosyl-methyltransferase MraW [Clostridium hathewayi DSM 13479]
 gi|288862867|gb|EFC95165.1| S-adenosyl-methyltransferase MraW [Clostridium hathewayi DSM 13479]
          Length = 349

 Score =  306 bits (785), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 106/331 (32%), Positives = 165/331 (49%), Gaps = 31/331 (9%)

Query: 3   SKSCKTMSSAIHH---TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG- 58
            K   T++  +       G H+ + + +++  L   PG+  LDAT G GG++R   K   
Sbjct: 32  EKYADTVAKVVSKGSTPAGMHLSICVREILDFLQIKPGQKGLDATLGYGGHTREMLKCLQ 91

Query: 59  --SNVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLG 112
              ++ ALD DP  ++  +E ++      E  ++ Q  F+ +     + G  D V+ DLG
Sbjct: 92  SQGHLYALDVDPIELAKTRERLQSQGFGPEILTIIQENFANIDRVAAEVGPFDFVLADLG 151

Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASR 171
           VSSMQID  DRGFS++  GPLD+R++   GI+A++ +     ++L  +L    +E  A  
Sbjct: 152 VSSMQIDNPDRGFSYKTEGPLDLRLNPEKGITAAERLQTIEEEELRGMLLENADEPYAEE 211

Query: 172 IAHAIVKR-RQSAPFQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEI 225
           IA A+V+  R+  P  TT  L  +I+K +        K        R+FQALRI VN+E 
Sbjct: 212 IARAVVQEIRRGNPIDTTTRLRQVIEKALSRVPAADRKEAVKKSCQRTFQALRIDVNSEF 271

Query: 226 EELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF 285
           E L   L      L  GG + V++FHS EDRLVKK F     +               V+
Sbjct: 272 EVLYSFLEKLPDVLAPGGRVAVLTFHSGEDRLVKKSFKRLKKEG--------------VY 317

Query: 286 QSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
             I  +V+ P+ E+   N R+RS K+R  ++
Sbjct: 318 SEIADEVIRPSAEECLRNGRARSTKMRWAVK 348


>gi|225375865|ref|ZP_03753086.1| hypothetical protein ROSEINA2194_01497 [Roseburia inulinivorans DSM
           16841]
 gi|225212300|gb|EEG94654.1| hypothetical protein ROSEINA2194_01497 [Roseburia inulinivorans DSM
           16841]
          Length = 355

 Score =  306 bits (785), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 107/331 (32%), Positives = 164/331 (49%), Gaps = 31/331 (9%)

Query: 3   SKSCKTMSSAI---HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG- 58
            K   T+   I       G H+ +++ ++I  L   PG+   DAT G  G++++  +   
Sbjct: 37  EKYQDTIEKVIRKGSTPAGMHISIMVREIIDFLQIKPGQTGFDATLGYSGHTKAMLECLK 96

Query: 59  --SNVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLG 112
              ++ A D DP   +  ++ + D     +  ++    F  + +   + G  D V+ DLG
Sbjct: 97  GQGHMYATDVDPIESAKTKKRLADAGFGEDILTIRLQNFCTIDEIAKEAGGFDFVLADLG 156

Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASR 171
           VSSMQID  DRGFSF+  GPLD+R++   GISA++ + Q +  +L  +L    +E  A  
Sbjct: 157 VSSMQIDNPDRGFSFKVDGPLDLRLNPEKGISAAERLAQIDEDELAGMLWENSDEPYAEE 216

Query: 172 IAHAIVKRRQS-APFQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEI 225
           +A AIV  R+   P  TT  L  +I++T+ F      K+       R+FQALRI VNNE 
Sbjct: 217 LARAIVTERKHGKPIDTTTRLREVIEETLSFLPEKEKKDTVKKTCQRTFQALRIDVNNEF 276

Query: 226 EELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF 285
           E L + +     ALK GG   +++FHS ED+LVKK                       V+
Sbjct: 277 EVLYEFMEKLPGALKPGGRAAILTFHSGEDKLVKKALKQ--------------GYKEGVY 322

Query: 286 QSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
             I   VV P+ E+ A N R+RS K+R  +R
Sbjct: 323 SEIANDVVRPSAEECAQNGRARSTKMRWAVR 353


>gi|257453541|ref|ZP_05618831.1| S-adenosyl-methyltransferase MraW [Enhydrobacter aerosaccus SK60]
 gi|257448999|gb|EEV23952.1| S-adenosyl-methyltransferase MraW [Enhydrobacter aerosaccus SK60]
          Length = 319

 Score =  306 bits (785), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 111/317 (35%), Positives = 167/317 (52%), Gaps = 28/317 (8%)

Query: 20  HVPVLLEKVIAL-LN----------PAPGKVILDATFGAGGYSRSFC---KMGSNVIALD 65
           H  VLL++ +A  LN                 +DATFG GG+SR         S ++  D
Sbjct: 10  HETVLLKETVASVLNVTVAALETGIIKKTGTFVDATFGRGGHSRLLLTYLDKDSRLLVFD 69

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGD 122
           +DP A+   Q  +     +  +   +F++LQD +   G   VDG++ DLGVSS Q+D G 
Sbjct: 70  KDPQAIQTAQA-LAASDARVIVIHDSFAKLQDNLQRLGIEQVDGIMADLGVSSPQLDDGS 128

Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSF + G +DMRM  + G S +  + + +   L  +L   GEE+ + RIA AI   +Q
Sbjct: 129 RGFSFMRDGAVDMRMDTTRGESVAQWLKRVDETVLADVLYNYGEERHSRRIARAI---KQ 185

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
              + +T  L+  I++     +  + HPAT+SFQA+RIF+NNE+ ++   L  +  ALK 
Sbjct: 186 MEHYDSTLALAETIKQAHPNWQKGK-HPATQSFQAMRIFINNELGDIDSFLAQSLIALKV 244

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV--VVPTQED 299
           GG L V+SFHSLEDR++K+F    S         +P    P   + ++ K   V P   +
Sbjct: 245 GGRLAVISFHSLEDRIIKQFLQKHSKGQYPEDANLP--MPPKRPKLLS-KPERVAPLATE 301

Query: 300 VAFNRRSRSAKLRAGMR 316
           +  N R+RSA LR+  R
Sbjct: 302 IKTNPRARSALLRSATR 318


>gi|260655421|ref|ZP_05860909.1| S-adenosyl-methyltransferase MraW [Jonquetella anthropi E3_33 E1]
 gi|260629869|gb|EEX48063.1| S-adenosyl-methyltransferase MraW [Jonquetella anthropi E3_33 E1]
          Length = 303

 Score =  306 bits (785), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 112/317 (35%), Positives = 173/317 (54%), Gaps = 22/317 (6%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDY 81
           +L++V+      P  +++DAT G GGYS +F        V  +D+D  A +  QE +  +
Sbjct: 1   MLQEVMDSFPRPPVGLVVDATLGLGGYSEAFLSRWPECRVAGIDQDGQARAIAQERLARW 60

Query: 82  KEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138
            ++F+++   F +L D +   G     GVV DLGVS++QI  G+RGFSF++ GPLDMRM+
Sbjct: 61  ADRFAVWPGNFRRLNDLMASHGEKEAAGVVVDLGVSNLQITEGERGFSFREDGPLDMRMN 120

Query: 139 CS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK 197
            S G++AS +VNQ    +L  I    GEE+ A  IA AI +RR  +  +TT  L  +I++
Sbjct: 121 ASEGLTASQLVNQMTEDELAGIFFRYGEERFARSIARAIARRRGQSSIETTGQLVEVIRE 180

Query: 198 TVYFSKNNR--IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
            +  +   +   HPA R FQALRI VN+E+  L   L      L  GG+ + V++HSLED
Sbjct: 181 GMPAAAQRKANGHPARRVFQALRIAVNDELGALEDLLSQVCGLLADGGVFVAVTYHSLED 240

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           RLVK+      G+ + +               ++++ + P++++V  N +SRSA+LRA  
Sbjct: 241 RLVKRAMREWEGQWLGIP--------------VSRRGLTPSEDEVLSNPKSRSARLRAFE 286

Query: 316 RTVERSIEDDSFVHLPR 332
           R     IE        R
Sbjct: 287 RRDNYQIEQGRLGPWRR 303


>gi|260578096|ref|ZP_05846017.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Corynebacterium jeikeium ATCC 43734]
 gi|258603735|gb|EEW16991.1| S-adenosyl-L-methionine-dependent methyltransferase MraW
           [Corynebacterium jeikeium ATCC 43734]
          Length = 342

 Score =  306 bits (785), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 100/325 (30%), Positives = 172/325 (52%), Gaps = 24/325 (7%)

Query: 20  HVPVLLEKVIALLNP------APGK-VILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70
           H+PV+ ++++ L+        AP + VI+D T GAGG+S +F     +  V+ LDRDP A
Sbjct: 7   HIPVMRDRMVELVGLGVNSENAPARPVIVDGTLGAGGHSEAFLDAFPHAIVVGLDRDPNA 66

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVP-------------DKGVDGVVFDLGVSSMQ 117
           ++     +  + ++F  +Q  F  + + +              + G+ G +FDLGVSSMQ
Sbjct: 67  LAEANARLARFGDRFVSYQTRFDGVTEALEDLMEQGKLPASVREHGISGFLFDLGVSSMQ 126

Query: 118 IDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
           +D  +RGF++    PLDMRM  S  ++A++++N  +  ++ RIL   G+E+ A +IA A+
Sbjct: 127 LDQPERGFAYAVDAPLDMRMDPSSPLTAAEILNTYSHGEIARILKTYGDERFAGKIASAV 186

Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           V+ R+  PF+ +  L  L+  T+  + +    HPA R+FQALR+ VN E+E L   +   
Sbjct: 187 VREREKQPFENSARLVELLYATIPAASRRTGGHPAKRTFQALRVEVNAELESLENLIPEI 246

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295
            + L  G + + +S+ SLED++VKK     S         +      A F+  T      
Sbjct: 247 SRWLHVGAVGVFMSYQSLEDKIVKKALVQLSTSKTPPGLPMELPGMEAEFELRTSGAEKA 306

Query: 296 TQEDVAFNRRSRSAKLRAGMRTVER 320
           ++ ++  N R+   ++RA  R  +R
Sbjct: 307 SEAEIEQNSRAAPVRVRAYSRVSDR 331


>gi|326315562|ref|YP_004233234.1| S-adenosyl-methyltransferase MraW [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gi|323372398|gb|ADX44667.1| S-adenosyl-methyltransferase MraW [Acidovorax avenae subsp. avenae
           ATCC 19860]
          Length = 311

 Score =  306 bits (785), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 112/305 (36%), Positives = 168/305 (55%), Gaps = 17/305 (5%)

Query: 26  EKVIALL----NPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETM 78
           ++ +  L     P+P  V +DATFG GG+SR   +       ++A D+DP A+   QE  
Sbjct: 15  DEAVDALLGGAGPSPAGVWIDATFGRGGHSRRILERLGPQGRLVAFDKDPEAI---QEAA 71

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138
           R    +FS+    F  L + +P++   G++ DLGVSS QID   RGFSF+  GPLDMRM 
Sbjct: 72  RITDARFSIRHEGFRHLAE-LPERSAAGILMDLGVSSPQIDSPGRGFSFRFDGPLDMRMD 130

Query: 139 CS-GISASDVVNQANVKDLTRILGILGEEKQA-SRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
            + G S +D +  A+V  +  ++   GEE+ A         +R +  P +TT +L+ L+ 
Sbjct: 131 TTRGESVADWLATADVGQIAEVIREYGEERFAGPIAKAIAARRAERGPLRTTSELAQLVA 190

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
             V   +    +PATR+FQALRIF+N E+EEL   L ++ + L  GG L V+SFHSLEDR
Sbjct: 191 GAVKT-REAGQNPATRTFQALRIFINAELEELQAALEASLRVLAPGGRLAVISFHSLEDR 249

Query: 257 LVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           +VK+F A  S +V   R    +   P   +++ +  + P   +V  N R+RSA +R   R
Sbjct: 250 IVKQFIAQHSKEVY-DRRAPFAAPQPMRLKALDR--IKPGASEVEANPRARSAVMRVAER 306

Query: 317 TVERS 321
           T   +
Sbjct: 307 TELPA 311


>gi|148240649|ref|YP_001226036.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. WH 7803]
 gi|262825757|sp|A5GP74|RSMH_SYNPW RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|147849188|emb|CAK24739.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. WH 7803]
          Length = 305

 Score =  306 bits (784), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 112/316 (35%), Positives = 159/316 (50%), Gaps = 31/316 (9%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPG-----KVILDATFGAGGYSRSFCKMGS--NVIALDRD 67
            +   HVPVL + ++  L+  P       +++DAT G GG+S           +I LD+D
Sbjct: 9   DSTFRHVPVLADVLLNALDEEPSVHWQSGLVVDATLGGGGHSSLLLDRYPDLRLIGLDQD 68

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
           P A +     +  +KE+ S+    F+   DY P +    V+ DLGVSS Q+D   RGFSF
Sbjct: 69  PTARAAAATRLSPWKERVSIVATNFA---DYSPPQSASLVLADLGVSSPQLDVAARGFSF 125

Query: 128 QKSGPLDMRMSCS--GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAP 184
           +  GPLDMRM+    G +A +++ +    DL  ++   GEE+ + RIA  I        P
Sbjct: 126 RLDGPLDMRMNPESDGETAGELIERMEESDLADLIYAYGEERLSRRIARRIKADLAAQGP 185

Query: 185 FQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
           +  T   +  +        +  RIHPATR+FQALRI VN+E+  L Q L SA   L+ GG
Sbjct: 186 YAGTASFAYAVAGCYPPKARRGRIHPATRTFQALRIAVNDELGVLDQLLSSAPGWLQPGG 245

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
           LL ++SFHSLEDR VK  F                         IT++ +V + E+   N
Sbjct: 246 LLAIISFHSLEDRRVKTAFLQDE-----------------RLDRITRRPLVASAEEQERN 288

Query: 304 RRSRSAKLRAGMRTVE 319
            RSRSAKLR   +  E
Sbjct: 289 PRSRSAKLRIARKRSE 304


>gi|33239648|ref|NP_874590.1| S-adenosylmethionine-dependent methyltransferase [Prochlorococcus
           marinus subsp. marinus str. CCMP1375]
 gi|42559452|sp|Q7VE18|RSMH_PROMA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|33237173|gb|AAP99242.1| Predicted S-adenosylmethionine-dependent methyltransferase
           [Prochlorococcus marinus subsp. marinus str. CCMP1375]
          Length = 305

 Score =  306 bits (784), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 113/317 (35%), Positives = 165/317 (52%), Gaps = 30/317 (9%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNPAPG-----KVILDATFGAGGYSRSFCKMGS--NVI 62
            S I  +   H PVL+ +V+  +   P        ++DAT G GG+S    K     ++ 
Sbjct: 4   ESKIVTSKFKHTPVLVNQVLEAIAKLPSELLIKGKLIDATIGGGGHSALILKGFPSLHIT 63

Query: 63  ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGD 122
            LD+DP A+    + +  +  +  +  + F+   D+VP + V  V+ DLGVSS QID   
Sbjct: 64  GLDQDPSAIDAASKQLLHFGSRAEIISSNFA---DFVPQEEVAFVLADLGVSSPQIDEAK 120

Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-R 180
           RGFSF+ +GPLDMRM+   G+ A +++ +   K L  ++   GEEK + RIA  I +   
Sbjct: 121 RGFSFRLNGPLDMRMNPKKGLKADELLEKTEEKALADLIYKYGEEKFSRRIARRIKQDLS 180

Query: 181 QSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
            + P++ T  L+  I        +N RIHPATR+FQALRI +NNE++ L   L+ A   L
Sbjct: 181 ANGPYEGTSALAYAIAGCYPPKMRNGRIHPATRTFQALRIAINNELDALQHLLQKAPNWL 240

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
             GG+  V+SFHSLEDRLVKK F +                     + IT+K +     +
Sbjct: 241 LPGGVFAVISFHSLEDRLVKKSFLTDE-----------------RLERITRKPIQADSNE 283

Query: 300 VAFNRRSRSAKLRAGMR 316
              N RSRSAKLR   +
Sbjct: 284 KLNNPRSRSAKLRLAKK 300


>gi|296113990|ref|YP_003627928.1| S-adenosyl-methyltransferase MraW [Moraxella catarrhalis RH4]
 gi|295921684|gb|ADG62035.1| S-adenosyl-methyltransferase MraW [Moraxella catarrhalis RH4]
          Length = 333

 Score =  305 bits (783), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 110/327 (33%), Positives = 175/327 (53%), Gaps = 25/327 (7%)

Query: 8   TMSSAIH-HTIGDHVPVLLEKVIAL------LNP---APGKVILDATFGAGGYSRSFCKM 57
           TMS+ I       H  VLL + +A+      LN        V +DATFG GG+S+   + 
Sbjct: 3   TMSNTISTSDEFSHTTVLLPETVAMVLGVKQLNDVTSKVSGVYVDATFGRGGHSQLLLEY 62

Query: 58  GS---NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDL 111
            +    +   D+DP A++   +++     +  +   +F+ L   +   G+D   G++ DL
Sbjct: 63  LAPEATLAVFDKDPEAIAVA-KSLAAQDTRIKVVHDSFAHLTKNLQALGIDKIDGLMADL 121

Query: 112 GVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQAS 170
           GVSS Q+D G RGFSF + G +DMRM  + G   S+ + + +  +L  +L   GEE+ + 
Sbjct: 122 GVSSPQLDDGTRGFSFMRDGVVDMRMDTTRGEPVSEWLQRVSADELADVLYEYGEERHSR 181

Query: 171 RIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQ 230
           +IA AI   +    + +T+ L+ +I++     +  + HPAT+SFQA+RIF+NNE+ ++  
Sbjct: 182 KIARAI---KSMQNYTSTRQLAEVIKQAHPAWQKGK-HPATQSFQAMRIFINNELGDVEA 237

Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSIT 289
            L  +   LKAGG+L V+SFHSLEDRL+K+F    S G+      +      P  F    
Sbjct: 238 FLAQSIGVLKAGGMLAVISFHSLEDRLIKQFLQRHSRGQYEEDARLPIIPKRPKYFGK-- 295

Query: 290 KKVVVPTQEDVAFNRRSRSAKLRAGMR 316
            K + P  ++V  N R+RSA LR  +R
Sbjct: 296 PKRIGPCDQEVKANPRARSAWLRGAVR 322


>gi|93007204|ref|YP_581641.1| methyltransferase [Psychrobacter cryohalolentis K5]
 gi|92394882|gb|ABE76157.1| methyltransferase [Psychrobacter cryohalolentis K5]
          Length = 383

 Score =  305 bits (783), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 112/329 (34%), Positives = 173/329 (52%), Gaps = 31/329 (9%)

Query: 20  HVPVLLEKVIALL----------------NPAPGKVILDATFGAGGYSRSFCKMGSN--- 60
           H  VLL++ +A +                +     + +DATFG GG+SR      ++   
Sbjct: 59  HDAVLLQEAVAAVLGVKALPKQTDDESQNSLQASGIYVDATFGRGGHSRLLLSQLADDAT 118

Query: 61  VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQ 117
           +I  D+DP A+S  +E + +   +  +   +F+ L D +       VDG++ DLG+SS Q
Sbjct: 119 LIVFDKDPTAISVARE-LANSDSRVKVVHDSFATLTDSLAAMRITQVDGLMADLGISSPQ 177

Query: 118 IDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
           ID G RGFSF + G +DMRM  S G S ++ +   + + L  +L   GEE+ + RIA AI
Sbjct: 178 IDDGSRGFSFMRDGAVDMRMDTSRGQSVAEWLETVDDETLANVLYEFGEERHSRRIARAI 237

Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236
              +Q   + +T  L+ +I+      +  + HPAT+SFQA+RIF+NNE+ ++   L  + 
Sbjct: 238 ---KQMDSYDSTLALAEVIKVAHPNWQRGK-HPATQSFQAMRIFINNELGDVDNFLEQSI 293

Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK-KVVVP 295
             LK GG L V+SFHSLEDR +K+F    S         +P    P   +  +K K V P
Sbjct: 294 PILKVGGQLAVISFHSLEDRRIKQFLQRHSKGQYPEDENLP--MPPKRPRYFSKPKRVGP 351

Query: 296 TQEDVAFNRRSRSAKLRAGMRTVERSIED 324
           ++ +++ N RSRSA LR   RT    + D
Sbjct: 352 SKAEISHNPRSRSAWLRMATRTDADYVAD 380


>gi|229495663|ref|ZP_04389392.1| S-adenosyl-methyltransferase MraW [Porphyromonas endodontalis ATCC
           35406]
 gi|229317433|gb|EEN83337.1| S-adenosyl-methyltransferase MraW [Porphyromonas endodontalis ATCC
           35406]
          Length = 307

 Score =  305 bits (782), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 101/309 (32%), Positives = 158/309 (51%), Gaps = 17/309 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H+PVL  + +  L   P  V  D T G  G++    +      ++ + DRD  A++    
Sbjct: 3   HLPVLCREAVEALLTRPNGVYADVTMGGAGHTCEILRHLGEKGHLYSFDRDQDAMANA-- 60

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +F+   + F  L  ++   GV   DGV+ DLGVSS   D  +RGFSF+  G L
Sbjct: 61  ---PVDPRFTFVASDFRYLSRWMRYFGVEHLDGVLADLGVSSHHFDTAERGFSFRFEGAL 117

Query: 134 -DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
            DMRM+  +G +A+D++N  +V+ L+ +    GE K A RIA  I K R S  ++T + L
Sbjct: 118 PDMRMNNRAGRTAADLLNTYSVEALSDLFYYYGELKDARRIAALIEKGRPSTGYRTIESL 177

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             ++   +      R    ++ FQALRI VN+E+  L   L S    L  GG L+V+++H
Sbjct: 178 LEVLAPVLPPQPPLRRKKLSQLFQALRIEVNDELGALRSLLTSLTSLLAPGGRLVVLTYH 237

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPS----NAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           SLEDRLVK++     G   +V    P         +  + + +K ++P+  ++A N R+R
Sbjct: 238 SLEDRLVKEWGKGLLGTSQSVEDNDPMAAIYGQKRSEIEVVNRKPILPSDAEIAENPRAR 297

Query: 308 SAKLRAGMR 316
           SAK+R   R
Sbjct: 298 SAKMRILQR 306


>gi|260435603|ref|ZP_05789573.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. WH 8109]
 gi|260413477|gb|EEX06773.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. WH 8109]
          Length = 294

 Score =  305 bits (782), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 110/305 (36%), Positives = 162/305 (53%), Gaps = 28/305 (9%)

Query: 20  HVPVLLEKVIALLN--PAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQ 75
           H PVL + V+      P P  +++DAT G GG+S    +      +I LD+D  A +   
Sbjct: 6   HEPVLADAVLDAARQIPRPDGLLIDATLGGGGHSARLLQQHPSLRLIGLDQDATARAAAA 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           E +  +  + S+    F+   DYVP +    V+ DLGVSS Q+D  +RGFSF+  GPLDM
Sbjct: 66  ERLAPFGARVSIVATNFA---DYVPPEPAVMVLADLGVSSPQLDVAERGFSFRLDGPLDM 122

Query: 136 RMSCSGI--SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTTQDLS 192
           RM+ SG   +A++++++    +L  ++   GEE+ + RIA  I    +    ++ T  L+
Sbjct: 123 RMNASGEGETAAELIDRLEENELADLIYGYGEERLSRRIARRIKADLKDKGSYEGTAALA 182

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             +        +  RIHPATR+FQALRI VN+E+  L + L+ A   L+  GLL ++SFH
Sbjct: 183 YAVAGCYPPKARRGRIHPATRTFQALRIAVNDELGVLDRLLQQAPDWLEPEGLLGIISFH 242

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR VK  F                       + IT+K VV T+++   N RSRSAKL
Sbjct: 243 SLEDRRVKTAF-----------------LRDERLKRITRKPVVATEQEEEANPRSRSAKL 285

Query: 312 RAGMR 316
           R   R
Sbjct: 286 RVAQR 290


>gi|296122349|ref|YP_003630127.1| S-adenosyl-methyltransferase MraW [Planctomyces limnophilus DSM
           3776]
 gi|296014689|gb|ADG67928.1| S-adenosyl-methyltransferase MraW [Planctomyces limnophilus DSM
           3776]
          Length = 298

 Score =  305 bits (781), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 121/316 (38%), Positives = 176/316 (55%), Gaps = 34/316 (10%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQ 75
            H+PV+L +VI  L   PG V+ D T GAGG+SR   K   +   ++A DRDP  +S  +
Sbjct: 1   MHLPVMLREVIQQLQLEPGLVVADGTLGAGGHSREILKAIGSAGMLLAFDRDPMMISLAE 60

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG--------VDGVVFDLGVSSMQIDCGDRGFSF 127
           +T+    E   + Q ++  ++D +            VD ++ DLG SS Q+   +RGFSF
Sbjct: 61  KTV--CGENVHIHQGSYIDIRDVLQRHTQATGRPPLVDRLLLDLGYSSDQLADRERGFSF 118

Query: 128 QKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           Q  GPLD+R S S  +SA+  +  AN  ++ R+L   GEE  A R+  AI    +    Q
Sbjct: 119 QTEGPLDLRFSTSENVSAAHWLATANDSEIVRVLTEFGEEPFADRLGPAIGLAARRGELQ 178

Query: 187 TTQDLSSLIQKTVYFS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRS-AEKALKAGG 243
           TT+DL  ++++TV  +  +N   HPATR FQALRI VN+E+  ++  L   A + L  GG
Sbjct: 179 TTKDLVRVVEQTVPPAILRNAEKHPATRVFQALRIQVNDELTHVSTMLNQIAPEVLAPGG 238

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
           ++ V++FHSLEDRLVK+ F  ++                 V+Q +T K +VPT  ++ FN
Sbjct: 239 IMAVITFHSLEDRLVKQAFRQKN-----------------VWQELTDKPLVPTPAEIRFN 281

Query: 304 RRSRSAKLRAGMRTVE 319
            RSRSAKLR   R  E
Sbjct: 282 PRSRSAKLRIARRIAE 297


>gi|222824174|ref|YP_002575748.1| S-adenosyl-methyltransferase MraW [Campylobacter lari RM2100]
 gi|263447001|sp|B9KD58|RSMH_CAMLR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|222539396|gb|ACM64497.1| S-adenosyl-methyltransferase MraW [Campylobacter lari RM2100]
          Length = 305

 Score =  305 bits (781), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 95/302 (31%), Positives = 158/302 (52%), Gaps = 9/302 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQE 76
            H+PVLL++V+   +       LD T G GG+S++  +      +IA D+D  A++  +E
Sbjct: 4   PHIPVLLQEVLDAFDDFDSGDFLDCTLGYGGHSKALLQAHEKLRLIACDKDLEALNFSKE 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
            ++ ++++ S     F  +   +P + + G++ D+GVSS+Q+D  DRGFS      LDMR
Sbjct: 64  FLKKFQDRISFNHIGFKDILTQIPTQNLRGILADIGVSSLQLDKNDRGFSLNSD-FLDMR 122

Query: 137 MSCSGI-SASDVVNQANVKDLTRILGILGEE-KQASRIAHAIVKRRQSAPFQTTQDLSSL 194
           M  + + SA +VVN  + + L +I    G+    AS +   I+  R      + ++LS +
Sbjct: 123 MDQNNLLSAKEVVNSYSKEALEQIFKDYGDLAPVASMLTQKIINARSQKEITSAKELSQI 182

Query: 195 IQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           I       +N  +  A   FQALRI VNNE+ EL   L + EKA      L ++SFHSLE
Sbjct: 183 IGNAKLKGRN--VSLALLVFQALRIEVNNELGELKSLLENIEKAKLKDCKLAIISFHSLE 240

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHP--AVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           DR+VK  F       +     I        ++ + ++KK +  ++E++++N RS  AK+R
Sbjct: 241 DRIVKNTFKRWEKDCICDERAIKCECGKGHSLGKILSKKAISASKEEISYNSRSSCAKMR 300

Query: 313 AG 314
             
Sbjct: 301 IF 302


>gi|13508054|ref|NP_110003.1| SAM-dependent methytransferase [Mycoplasma pneumoniae M129]
 gi|2496335|sp|P75466|RSMH_MYCPN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|1674216|gb|AAB96169.1| SAM-dependent methytransferase [Mycoplasma pneumoniae M129]
          Length = 308

 Score =  305 bits (781), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 95/307 (30%), Positives = 154/307 (50%), Gaps = 12/307 (3%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQ 75
             H  VLL++VI  LN       LD T G GG+S+   +      +   D D  +++   
Sbjct: 5   QPHKSVLLDEVIHNLNIKGDGNYLDLTVGFGGHSQHILEQLTTGTLTGNDMDKDSITFCT 64

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E  +D K+   L    F+   +++    V   DG++ DLGVSS Q+D  +RGFSF+ +GP
Sbjct: 65  ELFKD-KKNVVLVHDNFANFFNHLKQLKVTKFDGILIDLGVSSYQLDKPERGFSFKHAGP 123

Query: 133 LDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            DMRM  S    +A D++ + + ++LT +L   GE      IA A+     +    TT +
Sbjct: 124 FDMRMHQSDRVPTALDILERLSEEELTHVLKKFGEIAHPKPIAKALKTLINNTKNPTTVE 183

Query: 191 LSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           ++  ++     F K    +   + FQA+RI++N E+E L   L+   K L   G  +V+ 
Sbjct: 184 VAETVKAAASNFEKYKSRNYLAKVFQAIRIYLNRELESLEIVLQHIPKLLNNKGRFLVIV 243

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLE++LV+ +    +  V      +        F+ ITKK ++PT++++  N R RSA
Sbjct: 244 FHSLEEKLVRNYIFKLTHFVQPPELPVKLT---PPFELITKKPILPTEQEIKTNPRVRSA 300

Query: 310 KLRAGMR 316
           KL    +
Sbjct: 301 KLFVIEK 307


>gi|120609507|ref|YP_969185.1| S-adenosyl-methyltransferase MraW [Acidovorax citrulli AAC00-1]
 gi|263433318|sp|A1TKC3|RSMH_ACIAC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|120587971|gb|ABM31411.1| S-adenosyl-methyltransferase MraW [Acidovorax citrulli AAC00-1]
          Length = 311

 Score =  305 bits (781), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 112/305 (36%), Positives = 167/305 (54%), Gaps = 17/305 (5%)

Query: 26  EKVIALL----NPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETM 78
           ++ +  L     PAP  V +DATFG GG+SR   +       ++A D+DP A+       
Sbjct: 15  DEAVDALLGGAGPAPAGVWIDATFGRGGHSRRILERLGPDGRLVAFDKDPEAIHEA---A 71

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138
           R    +FS+    F  L D +P++   G++ DLGVSS QID  +RGFSF+  GPLDMRM 
Sbjct: 72  RITDARFSIRHEGFRHLAD-LPERSAAGILMDLGVSSPQIDSPERGFSFRFDGPLDMRMD 130

Query: 139 CS-GISASDVVNQANVKDLTRILGILGEEKQA-SRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
            + G S +D +  A+V  +  ++   GEE+ A         +R +  P +TT +L+ L+ 
Sbjct: 131 TTRGESVADWLATADVGQIAEVIREYGEERFAGPIAKAIAARRAERGPLRTTSELAQLVA 190

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
             V   +    +PATR+FQALRIF+N E+EEL   L ++ + L  GG L V+SFHSLEDR
Sbjct: 191 GAVKT-REAGQNPATRTFQALRIFINAELEELQAALEASLRVLAPGGRLAVISFHSLEDR 249

Query: 257 LVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           +VK+F A  S +V   R    +   P   +++ +  + P   +V  N R+RSA +R   R
Sbjct: 250 IVKQFIAQHSREVY-DRRAPFAAPQPMRLKALDR--IKPGACEVDANPRARSAVMRVAER 306

Query: 317 TVERS 321
           T   +
Sbjct: 307 TEVPA 311


>gi|88811846|ref|ZP_01127099.1| S-adenosyl-methyltransferase [Nitrococcus mobilis Nb-231]
 gi|88790730|gb|EAR21844.1| S-adenosyl-methyltransferase [Nitrococcus mobilis Nb-231]
          Length = 303

 Score =  304 bits (780), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 110/303 (36%), Positives = 157/303 (51%), Gaps = 13/303 (4%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRD 80
           LLE  I  L      V +D TFG GG++ +  K    G  +  +D+DP A+S  Q+    
Sbjct: 2   LLEAAIDALRIQANGVYVDGTFGCGGHAAAILKRLATGGRLGLIDKDPSAISRAQQKFAA 61

Query: 81  YKEQFSLFQATFSQLQDYVPDKGV----DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
              +  +   ++++L       GV    DGV+ DLG SS Q+D   RGFSF + GPLDMR
Sbjct: 62  -DARCFIHHGSYAELGVLADTCGVRGRIDGVLLDLGASSPQLDEARRGFSFLRDGPLDMR 120

Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M  S G+SA+  +    + ++  ++   GEE+ A RIA AI   RQ+     T    + +
Sbjct: 121 MDPSKGVSAAAWLADTPLSEIESVIRRYGEERYARRIAQAIDASRQAGRLPQTTGALAAL 180

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
                  +    HPATRSFQA+RI +N+E+EEL   L      L  GG L+V+SFHSLED
Sbjct: 181 IAAAVPRREVGKHPATRSFQAIRIAINDELEELRCFLAGICDLLCPGGRLVVISFHSLED 240

Query: 256 RLVKKFFASRS--GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           RLVK+F    S  G +     ++  +  P + +    K V P  E++  N R+RSA LR 
Sbjct: 241 RLVKRFMRDHSRIGDLPPGIPIVAHSMRPRLRRPA--KPVRPGAEEIRVNPRARSAVLRV 298

Query: 314 GMR 316
             R
Sbjct: 299 TER 301


>gi|260587648|ref|ZP_05853561.1| S-adenosyl-methyltransferase MraW [Blautia hansenii DSM 20583]
 gi|260541913|gb|EEX22482.1| S-adenosyl-methyltransferase MraW [Blautia hansenii DSM 20583]
          Length = 349

 Score =  304 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 100/331 (30%), Positives = 162/331 (48%), Gaps = 31/331 (9%)

Query: 3   SKSCKTMSSAIHH---TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---K 56
            K   T+   I       G H+ + +++++  L   PG++ LDAT G GG+S       +
Sbjct: 32  EKYADTIEKVIQKGGTPAGMHISICVQEILDFLQIQPGQIGLDATLGYGGHSSKMLGCLE 91

Query: 57  MGSNVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLG 112
              ++ ALD DP  +   +E +       +  ++ Q  F+ +     + G  D V+ DLG
Sbjct: 92  GKGHLYALDVDPIEIKKTKERLEKMDYKEDILTIKQMNFADVDQLKEEAGGFDFVLADLG 151

Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASR 171
           VSSMQID  +RGF+++  GPLD+R++   GISA++ +   +  +L  +L    +E  A  
Sbjct: 152 VSSMQIDNPERGFTYKFEGPLDLRLNPEKGISAAERLKDISQPELEGMLIENSDEPYAKE 211

Query: 172 IAHAIV-KRRQSAPFQTTQDLSSLIQKT---VYFSKNNR--IHPATRSFQALRIFVNNEI 225
           I++ I+ + R+  P  TT  L   ++K    +   +          R+FQALRI VN+E 
Sbjct: 212 ISNTIISEIRRGNPITTTTQLQKAVEKALVRIPEKERKEMVKKSCARTFQALRIDVNSEF 271

Query: 226 EELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF 285
           E L   +      L  G  + +++FHS EDRLVKK F                     V+
Sbjct: 272 EVLEAFMEKLPTVLNKGARVAILTFHSGEDRLVKKAFQRF--------------YREGVY 317

Query: 286 QSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
             I+K V+ P+ E+ A N RSRS K+R  ++
Sbjct: 318 SEISKDVIRPSAEECARNSRSRSTKMRWAIK 348


>gi|167043610|gb|ABZ08304.1| putative MraW methylase family protein [uncultured marine
           microorganism HF4000_APKG2M17]
          Length = 314

 Score =  304 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 102/313 (32%), Positives = 164/313 (52%), Gaps = 16/313 (5%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69
           + +    H PVL   VI  L      + +D T G GG++ +          V+A+DRD  
Sbjct: 1   MSYASQYHEPVLCNTVIQGLVSRTDGIYVDGTLGGGGHTAALLDALDSSGRVVAIDRDDD 60

Query: 70  AVSCGQETMRD--YKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRG 124
           A+    + +       + ++ +  F+ ++  + + G   V G + DLGVSS QID   RG
Sbjct: 61  AIRETSKRLSPDLASGRLTVLKGNFADVKLLLAEAGIAKVTGFLLDLGVSSHQIDEAGRG 120

Query: 125 FSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           FS +K GPLDMRM  S G+ A+++VNQ +V++L R+L   GE+    R         ++ 
Sbjct: 121 FSHRKDGPLDMRMDRSQGVDANELVNQLDVEELARLLRRFGEQP---RSGRIARAIIRAR 177

Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
           P   T+DLS LI+      +  +    +R FQA RI VN E++ L + L  +E  ++ G 
Sbjct: 178 PLSGTEDLSRLIRDLAPRGQEAK--TLSRVFQAFRIAVNEELDALDRVLLDSEAIMEVGA 235

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            L V+S+HSLEDR VK++  S + +    R +  +   P  ++ IT+K ++  + ++  N
Sbjct: 236 RLAVISYHSLEDRRVKRYMRSGNLEGEVQRDVFGNQITP--WRMITRKPIMADEAEIRDN 293

Query: 304 RRSRSAKLRAGMR 316
            RSRSA+LR   R
Sbjct: 294 PRSRSARLRIVER 306


>gi|226320608|ref|ZP_03796168.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi 29805]
 gi|226234027|gb|EEH32748.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi 29805]
          Length = 296

 Score =  304 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 98/305 (32%), Positives = 170/305 (55%), Gaps = 24/305 (7%)

Query: 20  HVPVLLEKV---IALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           H PVLL+ +   I  L      + +D+T G G ++++  +     +++ ++RDP  +   
Sbjct: 7   HFPVLLDAICKLIEDLPVKSDLIYIDSTLGEGVHAKAILEKYDFLSLVGIERDPQILERA 66

Query: 75  QETMRDYKEQFSLFQATFSQLQ-DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           ++ +  ++E+ + F   F     +Y  +   + ++ DLG+S        +GFSF +  PL
Sbjct: 67  RQFLSIFEERITYFNDWFDNFFVNYPLNVKANFILVDLGISMFHYKGSKKGFSFLEDEPL 126

Query: 134 DMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           DMR+  S   ISA+++VN  +  DL  ++  L  E  + RI+ AIV+ R+    +TT++L
Sbjct: 127 DMRLCSSSCKISAAEIVNTYSKYDLEALIYDLSNEYYSRRISKAIVEYRKIKKIETTKEL 186

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            S+I K   FSK  +I+PAT++FQALRI+VN+E+  L + L    + L   G+L +++FH
Sbjct: 187 QSIISKVYPFSKV-KINPATKTFQALRIYVNDELARLKRSLPFWVENLAKDGILAIITFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           S+EDR+VK FF S S                 ++  I+KK ++P+ +++  N+ SRSAKL
Sbjct: 246 SIEDRIVKDFFRSLSCD---------------LYAKISKKPIMPSFDEIKKNKPSRSAKL 290

Query: 312 RAGMR 316
           R   +
Sbjct: 291 RVIKK 295


>gi|195941340|ref|ZP_03086722.1| hypothetical protein Bbur8_00460 [Borrelia burgdorferi 80a]
 gi|224533199|ref|ZP_03673799.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi WI91-23]
 gi|224511926|gb|EEF82327.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi WI91-23]
 gi|312148089|gb|ADQ30748.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi JD1]
          Length = 296

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 98/305 (32%), Positives = 170/305 (55%), Gaps = 24/305 (7%)

Query: 20  HVPVLLEKV---IALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           H PVLL+ +   I  L      + +D+T G G ++++  +     +++ ++RDP  +   
Sbjct: 7   HFPVLLDAICKLIEDLPVKSDLIYIDSTLGEGVHAKAILEKYDFLSLVGIERDPQILERA 66

Query: 75  QETMRDYKEQFSLFQATFSQLQ-DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           ++ +  ++E+ + F   F     +Y  +   + ++ DLG+S        +GFSF +  PL
Sbjct: 67  RQFLSIFEERITYFNDWFDNFFVNYPLNVKANFILVDLGISMFHYKGSKKGFSFLEDEPL 126

Query: 134 DMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           DMR+  S   ISA+++VN  +  DL  ++  L  E  + RI+ AIV+ R+    +TT++L
Sbjct: 127 DMRLCSSSCKISAAEIVNTYSKYDLEALIYDLSNEHYSRRISKAIVEYRKIKKIETTKEL 186

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            S+I K   FSK  +I+PAT++FQALRI+VN+E+  L + L    + L   G+L +++FH
Sbjct: 187 QSIISKVYPFSKV-KINPATKTFQALRIYVNDELTRLKRSLPFWVENLAKDGILAIITFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           S+EDR+VK FF S S                 ++  I+KK ++P+ +++  N+ SRSAKL
Sbjct: 246 SIEDRIVKDFFRSLSCD---------------LYAKISKKPIMPSFDEIKKNKPSRSAKL 290

Query: 312 RAGMR 316
           R   +
Sbjct: 291 RVIKK 295


>gi|254819736|ref|ZP_05224737.1| S-adenosyl-methyltransferase MraW [Mycobacterium intracellulare
           ATCC 13950]
          Length = 321

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 113/313 (36%), Positives = 177/313 (56%), Gaps = 18/313 (5%)

Query: 22  PVLLEKVIALLNPA-----PGKV---ILDATFGAGGYSRSFCKMGS--NVIALDRDPFAV 71
           PVLLE+ +ALL PA     P      ++DAT GAGG++  F        +I LDRDP A+
Sbjct: 2   PVLLERCVALLTPALTRHHPDGTGATLVDATVGAGGHAERFLTELPGLRLIGLDRDPTAL 61

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSSMQIDCGDRGF 125
              +  +  + ++ +L +  +  +   + + G      VDG++FDLGVSSMQ+D  +RGF
Sbjct: 62  DITRTRLARFSDRVTLVRTRYDGVATALAESGYAATESVDGMLFDLGVSSMQLDRAERGF 121

Query: 126 SFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           ++ +  PLDMRM     ++A+D++N  +  +L  IL   GEE+ A RIA  IV+RR   P
Sbjct: 122 AYAQDAPLDMRMDPDAPLTAADILNTYDETELANILHRYGEERFARRIAAHIVRRRARQP 181

Query: 185 FQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
           F +T DL +L+ + +  + +    HPA R+FQALR+ VN+E++ L   L +A  AL  GG
Sbjct: 182 FASTADLVALLYEAIPAAARRTGGHPAKRTFQALRVAVNDELDSLRAALPAALDALAVGG 241

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            ++V+++ SLEDR+VK+ FA        V   +    H   F+++T+        ++  N
Sbjct: 242 RIVVMTYQSLEDRIVKRLFAEAVASRTPVDLPVELPGHQPRFRALTQGAGRADATEIERN 301

Query: 304 RRSRSAKLRAGMR 316
            RS + +LRA  R
Sbjct: 302 PRSAAVRLRALQR 314


>gi|291563183|emb|CBL41999.1| S-adenosyl-methyltransferase MraW [butyrate-producing bacterium
           SS3/4]
          Length = 360

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 103/337 (30%), Positives = 162/337 (48%), Gaps = 31/337 (9%)

Query: 3   SKSCKTMSSAI---HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG- 58
            K   T+   I       G H+ + + +++  L+  PG   LDAT G GG++    K   
Sbjct: 36  EKYADTVEKVIKKGSTPAGMHISICVNEILDFLDIRPGMQGLDATLGYGGHTTEMLKKLE 95

Query: 59  --SNVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLG 112
              ++  LD DP  +   +  +++     +  ++ Q  F+ +   VP+ G  D V+ DLG
Sbjct: 96  GQGHMYGLDVDPIEIVKTKARLKERGFDEDILTVKQMNFADIDKLVPETGLFDFVLADLG 155

Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASR 171
           VSSMQID  +RGF+++  GPLD+R++   GISA++ + Q +++++  +     +E  A  
Sbjct: 156 VSSMQIDNPERGFTYKADGPLDLRLNPEKGISAAERLKQMDMEEIAGMFVENSDEPYAEE 215

Query: 172 IAHAIVKR-RQSAPFQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEI 225
           IA  I KR R+    +TT  L  +I+ T+ F      K        R FQALRI VN E 
Sbjct: 216 IAREIAKRNRKRQYIETTTGLKEVIETTLSFIPEKERKEAVKKSCQRCFQALRIDVNQEF 275

Query: 226 EELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF 285
           E L   L      L  GG   +++FHS EDRLVK +F       +              +
Sbjct: 276 EVLESFLTKLPGILAPGGRAAILTFHSGEDRLVKYYFKEGKKDGL--------------Y 321

Query: 286 QSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSI 322
             +   V+ P+ E+   N R+RS K+R  +R  E S 
Sbjct: 322 SDVANDVIRPSAEECQRNPRARSTKMRWAIREGENSH 358


>gi|119953105|ref|YP_945314.1| S-adenosyl-methyltransferase MraW [Borrelia turicatae 91E135]
 gi|263447569|sp|A1QZA2|RSMH_BORT9 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|119861876|gb|AAX17644.1| S-adenosyl-methyltransferase MraW [Borrelia turicatae 91E135]
          Length = 297

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 106/308 (34%), Positives = 168/308 (54%), Gaps = 24/308 (7%)

Query: 20  HVPVLLEKVIALL---NPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCG 74
           H+PVLLE++I LL   N + G V +D T G GG+S +  K   N  VI +DRD   ++  
Sbjct: 6   HIPVLLEEIINLLEASNISDGFVFVDCTLGEGGHSSAVLKKYQNINVIGIDRDDVVLNRA 65

Query: 75  QETMRDYKEQFSLFQATFSQL-QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           +E++ ++K + S F   F     +Y     ++ ++ DLG+S        RGFSF +   L
Sbjct: 66  KESLIEFKGRVSYFNTWFDDFFSEYPLSSKINFILADLGISMFHYKMSGRGFSFFEDERL 125

Query: 134 DMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           DMR+     G+SA D++N  + K L  ++  L  E+ + RI  +I++ R+    +T ++L
Sbjct: 126 DMRLYPGAGGLSAYDIINTFDKKRLENLIYELSGERYSRRIVKSILEYRKIKKIETPREL 185

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             ++ K     K  +I+PAT++FQALRI+VN+E+  L + L    ++L   G+L +V+FH
Sbjct: 186 QDIVSKAYPRIKL-KINPATKTFQALRIYVNDELFRLKRSLPLWVESLSNNGVLAIVTFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLED++VK+FF   S                     +TKK ++P  E+  FN  SRSAKL
Sbjct: 245 SLEDKIVKEFFKGLSKDQYC---------------ILTKKPIMPRCEEKRFNSASRSAKL 289

Query: 312 RAGMRTVE 319
           R   +  E
Sbjct: 290 RVIKKLYE 297


>gi|225848381|ref|YP_002728544.1| S-adenosyl-methyltransferase MraW [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|262825703|sp|C1DTV7|RSMH_SULAA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|225643386|gb|ACN98436.1| S-adenosyl-methyltransferase MraW [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 293

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 108/305 (35%), Positives = 168/305 (55%), Gaps = 22/305 (7%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76
           +H  VL  +V+           +DAT G GG+S    K    +  I +D+D +A+   +E
Sbjct: 3   EHYSVLHREVLEFTKDLKEGYFIDATVGGGGHSYLILKQNPKLKIIGVDKDDYALEVAKE 62

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            ++D++ +FSL +++F  +   V D  V+   G++FD GVS  Q+    RGFSFQ+  PL
Sbjct: 63  RLKDFEGRFSLVKSSFKDIDKIVKDLDVNPVVGILFDFGVSHFQLKLP-RGFSFQREEPL 121

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  S  ++A  VVN      L  I+   GEEK A RIA  IV+ R+    +TT++L+
Sbjct: 122 DMRMDTSSELTAYYVVNYYPESRLFNIISKYGEEKFAKRIAKNIVEYRKKKKIETTKELA 181

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            ++ ++   + +++RIHPAT++FQA+RI VNNE+ E+ + L  A   +   G++I +SFH
Sbjct: 182 DIVYRSYPPNLRHSRIHPATKTFQAIRIEVNNELLEIEEALEKAIHIVSKEGIIITISFH 241

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR+VK  F                         +TKK + P ++++  N  SRSAK+
Sbjct: 242 SLEDRIVKNTFKKYK--------------ELKFLDILTKKPITPKEDEIRENPASRSAKM 287

Query: 312 RAGMR 316
           R   R
Sbjct: 288 RVARR 292


>gi|216264839|ref|ZP_03436831.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi 156a]
 gi|218249331|ref|YP_002374829.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi ZS7]
 gi|221217744|ref|ZP_03589212.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi 72a]
 gi|224533715|ref|ZP_03674303.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi CA-11.2a]
 gi|225550125|ref|ZP_03771085.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi 118a]
 gi|226321624|ref|ZP_03797150.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi Bol26]
 gi|226709919|sp|B7J1N4|RSMH_BORBZ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|215981312|gb|EEC22119.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi 156a]
 gi|218164519|gb|ACK74580.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi ZS7]
 gi|221192421|gb|EEE18640.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi 72a]
 gi|224513008|gb|EEF83371.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi CA-11.2a]
 gi|225369237|gb|EEG98690.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi 118a]
 gi|226232813|gb|EEH31566.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi Bol26]
          Length = 296

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 98/305 (32%), Positives = 170/305 (55%), Gaps = 24/305 (7%)

Query: 20  HVPVLLEKV---IALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           H PVLL+ +   I  L      + +D+T G G ++++  +     +++ ++RDP  +   
Sbjct: 7   HFPVLLDAICKLIEDLPVKSDLIYIDSTLGEGVHAKAILEKYDFLSLVGIERDPQILERA 66

Query: 75  QETMRDYKEQFSLFQATFSQLQ-DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           ++ +  ++E+ + F   F     +Y  +   + ++ DLG+S        +GFSF +  PL
Sbjct: 67  RQFLSIFEERITYFNDWFDNFFVNYPLNVKANFILVDLGISMFHYKGSKKGFSFLEDEPL 126

Query: 134 DMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           DMR+  S   ISA+++VN  +  DL  ++  L  E  + RI+ AIV+ R+    +TT++L
Sbjct: 127 DMRLCSSSCKISAAEIVNTYSKYDLEALIYDLSNEHYSRRISKAIVEYRKIKKIETTKEL 186

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            S+I K   FSK  +I+PAT++FQALRI+VN+E+  L + L    + L   G+L +++FH
Sbjct: 187 QSIISKVYPFSKV-KINPATKTFQALRIYVNDELARLKRSLPFWVENLAKDGILAIITFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           S+EDR+VK FF S S                 ++  I+KK ++P+ +++  N+ SRSAKL
Sbjct: 246 SIEDRIVKDFFRSLSCD---------------LYAKISKKPIMPSFDEIKKNKPSRSAKL 290

Query: 312 RAGMR 316
           R   +
Sbjct: 291 RVIKK 295


>gi|146328861|ref|YP_001209878.1| S-adenosyl-methyltransferase MraW [Dichelobacter nodosus VCS1703A]
 gi|167011832|sp|A5EY11|RSMH_DICNV RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|146232331|gb|ABQ13309.1| S-adenosyl-methyltransferase MraW [Dichelobacter nodosus VCS1703A]
          Length = 308

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 111/311 (35%), Positives = 168/311 (54%), Gaps = 15/311 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVS 72
              +H+PVLL + +A L  AP    LDATFG GG+S            + ALDRD  A +
Sbjct: 2   ETSEHIPVLLAEAVAALEIAPNGRYLDATFGRGGHSSEILAQLGESGQLYALDRDQQAAA 61

Query: 73  CGQETMRDYKEQFSLFQATFSQLQ---DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
              +       +F   +  FS+++     +  + +DG++FDLGVSS Q+D   RGFSF K
Sbjct: 62  VAAQI---TDPRFHFARCAFSEMETAFAALGAESLDGILFDLGVSSPQLDDPSRGFSFAK 118

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQA--SRIAHAIVKRRQSAPFQ 186
            GPLDMRM     ++A   +   +   LT ++   G E      RIA AI+  +     +
Sbjct: 119 EGPLDMRMDNEQNLTAQKWLKNVDEDTLTTVIRDYGGEPHTVAKRIAKAILAAKND--LK 176

Query: 187 TTQDLSSLIQKTVYFSKNN-RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
           +T DL+S++ +          +HPAT++FQA+RI VN+EI E+ + LR+A   LK+GG+L
Sbjct: 177 STLDLASVVAQARPKKLYKPHLHPATQTFQAIRIAVNDEIGEIQRALRAATMMLKSGGIL 236

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           +V+SFH LED  VK+F  S  G+ +       +  +      +   V+ P+  ++A N R
Sbjct: 237 VVISFHGLEDATVKRFVRSMEGEPLPAEIPATNTTNIHQVLRLVPPVIKPSSAEIAQNPR 296

Query: 306 SRSAKLRAGMR 316
           SRSAKLR  ++
Sbjct: 297 SRSAKLRKAVK 307


>gi|15594651|ref|NP_212440.1| hypothetical protein BB0306 [Borrelia burgdorferi B31]
 gi|8134806|sp|O51286|RSMH_BORBU RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|2688161|gb|AAC66643.1| conserved hypothetical protein [Borrelia burgdorferi B31]
 gi|312149012|gb|ADQ29083.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi N40]
          Length = 296

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 98/305 (32%), Positives = 170/305 (55%), Gaps = 24/305 (7%)

Query: 20  HVPVLLEKV---IALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           H PVLL+ +   I  L      + +D+T G G ++++  +     +++ ++RDP  +   
Sbjct: 7   HFPVLLDAICKLIEDLPVKSDLIYIDSTLGEGVHAKAILEKYDFLSLVGIERDPQILERA 66

Query: 75  QETMRDYKEQFSLFQATFSQLQ-DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           ++ +  ++E+ + F   F     +Y  +   + ++ DLG+S        +GFSF +  PL
Sbjct: 67  RQFLSIFEERITYFNDWFDNFFVNYPLNVKANFILVDLGISMFHYKGSKKGFSFLEDEPL 126

Query: 134 DMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           DMR+  S   ISA+++VN  +  DL  ++  L  E  + RI+ AIV+ R+    +TT++L
Sbjct: 127 DMRLCSSSCKISAAEIVNTYSKYDLEALIYDLSNEHYSRRISKAIVEYRKIKKIETTKEL 186

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            S+I K   FSK  +I+PAT++FQALRI+VN+E+  L + L    + L   G+L +++FH
Sbjct: 187 QSIISKVYPFSKV-KINPATKTFQALRIYVNDELARLKRSLPFWVENLAKDGILAIITFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           S+EDR+VK FF S S                 ++  I+KK ++P+ +++  N+ SRSAKL
Sbjct: 246 SIEDRIVKDFFRSLSCD---------------LYAKISKKPIMPSFDEIKKNKPSRSAKL 290

Query: 312 RAGMR 316
           R   +
Sbjct: 291 RVVKK 295


>gi|223888788|ref|ZP_03623379.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi 64b]
 gi|223885604|gb|EEF56703.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi 64b]
          Length = 296

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 97/305 (31%), Positives = 170/305 (55%), Gaps = 24/305 (7%)

Query: 20  HVPVLLEKV---IALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           H PVLL+ +   I  L      + +D+T G G ++++  +     +++ ++RDP  +   
Sbjct: 7   HFPVLLDAICKLIEDLPVKSDLIYIDSTLGEGVHAKAILEKYDFLSLVGIERDPQILERA 66

Query: 75  QETMRDYKEQFSLFQATFSQLQ-DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           ++ +  ++E+ + F   F     +Y  +   + ++ DLG+S        +GFSF +  PL
Sbjct: 67  RQFLSIFEERITYFNDWFDNFFVNYPLNVKANFILVDLGISMFHYKGSKKGFSFLEDEPL 126

Query: 134 DMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           DMR+  S   ISA+++VN  +  DL  ++  L  E  + +I+ AIV+ R+    +TT++L
Sbjct: 127 DMRLCSSSCKISAAEIVNTYSKYDLEALIYDLSNEHYSRKISKAIVEYRKIKKIETTKEL 186

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            S+I K   FSK  +I+PAT++FQALRI+VN+E+  L + L    + L   G+L +++FH
Sbjct: 187 QSIISKVYPFSKV-KINPATKTFQALRIYVNDELARLKRSLPFWVENLAKDGILAIITFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           S+EDR+VK FF S S                 ++  I+KK ++P+ +++  N+ SRSAKL
Sbjct: 246 SIEDRIVKDFFRSLSCD---------------LYAKISKKPIMPSFDEIKKNKPSRSAKL 290

Query: 312 RAGMR 316
           R   +
Sbjct: 291 RVVKK 295


>gi|326567260|gb|EGE17380.1| S-adenosyl-methyltransferase MraW [Moraxella catarrhalis 12P80B1]
 gi|326572872|gb|EGE22857.1| S-adenosyl-methyltransferase MraW [Moraxella catarrhalis CO72]
          Length = 330

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 109/326 (33%), Positives = 174/326 (53%), Gaps = 25/326 (7%)

Query: 9   MSSAIH-HTIGDHVPVLLEKVIAL------LNP---APGKVILDATFGAGGYSRSFCKMG 58
           MS+ I       H  VLL + +A+      LN        V +DATFG GG+S+   +  
Sbjct: 1   MSNTISTSDEFSHTTVLLPETVAMVLGVKQLNDVTSKVSGVYVDATFGRGGHSQLLLEYL 60

Query: 59  S---NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLG 112
           +    +   D+DP A++   +++     +  +   +F+ L   +   G+D   G++ DLG
Sbjct: 61  APEATLAVFDKDPEAIAVA-KSLAAQDTRIKVVHDSFAHLTKNLQALGIDKIDGLMADLG 119

Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASR 171
           VSS Q+D G RGFSF + G +DMRM  + G   S+ + + +  +L  +L   GEE+ + +
Sbjct: 120 VSSPQLDDGTRGFSFMRDGVVDMRMDTTRGEPVSEWLQRVSADELADVLYEYGEERHSRK 179

Query: 172 IAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQG 231
           IA AI   +    + +T+ L+ +I++     +  + HPAT+SFQA+RIF+NNE+ ++   
Sbjct: 180 IARAI---KSMQNYTSTRQLAEVIKQAHPAWQKGK-HPATQSFQAMRIFINNELGDVEAF 235

Query: 232 LRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITK 290
           L  +   LKAGG+L V+SFHSLEDRL+K+F    S G+      +      P  F     
Sbjct: 236 LAQSIGVLKAGGMLAVISFHSLEDRLIKQFLQRHSRGQYEEDARLPIIPKRPKYFGK--P 293

Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMR 316
           K + P  ++V  N R+RSA LR  +R
Sbjct: 294 KRIGPCDQEVKANPRARSAWLRGAVR 319


>gi|87300864|ref|ZP_01083706.1| methyltransferase [Synechococcus sp. WH 5701]
 gi|87284735|gb|EAQ76687.1| methyltransferase [Synechococcus sp. WH 5701]
          Length = 299

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 113/306 (36%), Positives = 166/306 (54%), Gaps = 26/306 (8%)

Query: 17  IGDHVPVLLEKVIALLNPAPG-KVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSC 73
             DH+PVL   V+A     PG   +LD T G GG+S           +I LD+DP A++ 
Sbjct: 4   TFDHLPVLAAAVVAGFTDLPGEGTLLDVTVGGGGHSALLLAAHPGLRLIGLDQDPAALAA 63

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
             E +  + ++ +L  + F+   +Y P + + GV+ DLGVSS Q+D  +RGFSF+  GPL
Sbjct: 64  AAERLEPFADRVTLVPSNFA---NYAPSEPLVGVLADLGVSSPQLDRPERGFSFRLDGPL 120

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ-SAPFQTTQDL 191
           DMRM+   G +A++++++   KDL  ++   GEE+ + RIA  IV+ R      + T  L
Sbjct: 121 DMRMNSAEGETAAELMDRVEEKDLADLIYAYGEERLSRRIARRIVEARPWHGSSRGTAAL 180

Query: 192 SSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           + L+        ++ RIH ATR+FQALRI VN+E+  L + L +A   L  GGL  V+SF
Sbjct: 181 AYLVAGCYPPKARHGRIHAATRTFQALRIAVNDELGALERLLHNAPDWLMPGGLFGVISF 240

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDR VK  F +                     + +T+K VV  +++   N RSRSAK
Sbjct: 241 HSLEDRRVKAAFLADD-----------------RLERLTRKPVVADEQEAERNPRSRSAK 283

Query: 311 LRAGMR 316
            R   R
Sbjct: 284 FRLARR 289


>gi|262831581|sp|Q1Q846|RSMH_PSYCK RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 342

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 112/329 (34%), Positives = 173/329 (52%), Gaps = 31/329 (9%)

Query: 20  HVPVLLEKVIALL----------------NPAPGKVILDATFGAGGYSRSFCKMGSN--- 60
           H  VLL++ +A +                +     + +DATFG GG+SR      ++   
Sbjct: 18  HDAVLLQEAVAAVLGVKALPKQTDDESQNSLQASGIYVDATFGRGGHSRLLLSQLADDAT 77

Query: 61  VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQ 117
           +I  D+DP A+S  +E + +   +  +   +F+ L D +       VDG++ DLG+SS Q
Sbjct: 78  LIVFDKDPTAISVARE-LANSDSRVKVVHDSFATLTDSLAAMRITQVDGLMADLGISSPQ 136

Query: 118 IDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
           ID G RGFSF + G +DMRM  S G S ++ +   + + L  +L   GEE+ + RIA AI
Sbjct: 137 IDDGSRGFSFMRDGAVDMRMDTSRGQSVAEWLETVDDETLANVLYEFGEERHSRRIARAI 196

Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE 236
              +Q   + +T  L+ +I+      +  + HPAT+SFQA+RIF+NNE+ ++   L  + 
Sbjct: 197 ---KQMDSYDSTLALAEVIKVAHPNWQRGK-HPATQSFQAMRIFINNELGDVDNFLEQSI 252

Query: 237 KALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK-KVVVP 295
             LK GG L V+SFHSLEDR +K+F    S         +P    P   +  +K K V P
Sbjct: 253 PILKVGGQLAVISFHSLEDRRIKQFLQRHSKGQYPEDENLP--MPPKRPRYFSKPKRVGP 310

Query: 296 TQEDVAFNRRSRSAKLRAGMRTVERSIED 324
           ++ +++ N RSRSA LR   RT    + D
Sbjct: 311 SKAEISHNPRSRSAWLRMATRTDADYVAD 339


>gi|311103994|ref|YP_003976847.1| methyltransferase [Achromobacter xylosoxidans A8]
 gi|310758683|gb|ADP14132.1| S-adenosyl-methyltransferase MraW [Achromobacter xylosoxidans A8]
          Length = 364

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 119/350 (34%), Positives = 182/350 (52%), Gaps = 36/350 (10%)

Query: 19  DHVPVLLEKVIALLNP----------------------APGKVILDATFGAGGYSRSFCK 56
           +H PVLLE  +  L                        A   V +D TFG GG+SR    
Sbjct: 4   EHRPVLLEPTVDALLLPDFGGKGATRSHQQAGPATATRAEDGVFVDGTFGRGGHSRELLG 63

Query: 57  MGS---NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFD 110
                  ++  D+DP A++           + ++    F+ + + +   G   VDGV+ D
Sbjct: 64  RLGKAARLVVFDKDPEAIAVANAL-AAADPRVTVVHGGFATMAEELEQLGIGKVDGVMLD 122

Query: 111 LGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQA 169
           LGVSS QID  +RGFSF + GPLDMRM  + G + +D + QA+V ++  ++   GEE+ A
Sbjct: 123 LGVSSPQIDDAERGFSFMRDGPLDMRMDTTRGPTVADWLAQASVDEMREVIADYGEERFA 182

Query: 170 SRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELA 229
            ++A AI  RR + P +TT +L+  +   V  ++    HPATR+FQALRI++N E+EELA
Sbjct: 183 FQVAKAIAARRATRPLRTTLELAECVASAV-RTREKGQHPATRTFQALRIYINRELEELA 241

Query: 230 QGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI--PSNAHPAVFQS 287
           + L +A   L  GG L V+SFHSLEDR+VK+  A+ +    A   +    S     V +S
Sbjct: 242 RTLAAALDLLAPGGRLAVISFHSLEDRMVKQCIAAAARPAAAHARLPLRESEMPQPVLRS 301

Query: 288 ITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDDSFVHLPRLPTLS 337
           + +  V+   ++V+ N R+RSA LR   RT E  +  +      ++ +L 
Sbjct: 302 LGR--VLAEDDEVSANARARSAVLRVAERT-ETPLPAEGGFAFVKIGSLP 348


>gi|154148181|ref|YP_001406384.1| S-adenosyl-methyltransferase MraW [Campylobacter hominis ATCC
           BAA-381]
 gi|171769702|sp|A7I1J3|RSMH_CAMHC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|153804190|gb|ABS51197.1| S-adenosyl-methyltransferase MraW [Campylobacter hominis ATCC
           BAA-381]
          Length = 310

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 92/308 (29%), Positives = 156/308 (50%), Gaps = 15/308 (4%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIAL--DRDPFAVSCGQE 76
            H+PVL  +V+ +       +++D T G  G+S +      N+     D+D  A+   ++
Sbjct: 4   PHIPVLRNEVVDIFKDLQ-GLLIDCTLGFAGHSSAILSANENIRIFACDKDDEALDFSKK 62

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK------GVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +  +K +  +F++ FS    ++          V G++ D+GVSS+QID  DRGFS +  
Sbjct: 63  RVEIFKNRIKIFKSGFSNFLPFLETNEILNLSNVVGILADIGVSSLQIDNNDRGFSLKSD 122

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM  +  + A  VVN  +  DL RI     E   A +IA  I   R      + +
Sbjct: 123 A-LDMRMDKNASLDAKFVVNHYSRSDLERIFYEFAELTNAKQIAAKIANYRADKEITSAK 181

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           +L+++I  + +  KN  I  AT +FQA+RI VN E++EL + L S E +      + +++
Sbjct: 182 ELATIIGTSNF--KNRSISTATLAFQAIRIEVNKELDELNKLLDSIENSAIQNAKIAIIT 239

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           FHSLED++VK  F   +   +            + A+ + +TKK +  + +++  N R++
Sbjct: 240 FHSLEDKIVKNRFKKWAQSCICPPFFERCECGNNHAIGKILTKKPITASADELKQNSRAK 299

Query: 308 SAKLRAGM 315
           SAKLR   
Sbjct: 300 SAKLRVFE 307


>gi|283780728|ref|YP_003371483.1| S-adenosyl-methyltransferase MraW [Pirellula staleyi DSM 6068]
 gi|283439181|gb|ADB17623.1| S-adenosyl-methyltransferase MraW [Pirellula staleyi DSM 6068]
          Length = 318

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 111/338 (32%), Positives = 170/338 (50%), Gaps = 41/338 (12%)

Query: 1   MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-- 58
           M   S  T  ++   T   HV V+  ++I  L P+ G ++LD T GAGG++R   +    
Sbjct: 1   MSDSSSPTDQASPATTQPIHVSVMPREIIEWLRPSAGSILLDGTLGAGGHTRLLAEAIDA 60

Query: 59  ---------------SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG 103
                            V++ DRD  A++  +  ++       L  A F +L   + + G
Sbjct: 61  AENLAKSTGNTQFSPGYVLSSDRDEAALARAEVHLKGLP--VKLVHANFCELPSVLEELG 118

Query: 104 VDGV---VFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRI 159
           V GV   V DLG+SS Q+    RGFSF  +G LD+R   S G  A  ++ +   +++  I
Sbjct: 119 VTGVQGCVLDLGLSSDQLADDARGFSFDATGELDLRFDTSTGDPAWKLLEKLREEEIANI 178

Query: 160 LGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRI 219
           +   GEE+ + RIA  I ++R   P +T  +L+ ++++ V    + +I PATR+FQALRI
Sbjct: 179 IYQFGEERLSRRIARKICEQRIIKPIRTADELARIVRRCVPRG-DGKIDPATRTFQALRI 237

Query: 220 FVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSN 279
            VN E++ L + L    + L  GG L ++SFHSLEDRLVK+ F S               
Sbjct: 238 AVNGELDALKKALEKIPECLAPGGRLAIISFHSLEDRLVKEAFRSD-------------- 283

Query: 280 AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
                  ++TKK +    +++A N RSRSAKLR   R 
Sbjct: 284 ---LRLNNLTKKPLTALDDELASNPRSRSAKLRVAERV 318


>gi|163814931|ref|ZP_02206319.1| hypothetical protein COPEUT_01082 [Coprococcus eutactus ATCC 27759]
 gi|158449870|gb|EDP26865.1| hypothetical protein COPEUT_01082 [Coprococcus eutactus ATCC 27759]
          Length = 348

 Score =  303 bits (777), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 100/331 (30%), Positives = 162/331 (48%), Gaps = 31/331 (9%)

Query: 3   SKSCKTMSSAIHH---TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG- 58
            K   T+   I       G H+ + + +++      PG+  LDAT G GG++    +   
Sbjct: 30  EKYADTIEKVISKGSTPAGMHISICVNEILDFFQIQPGQQGLDATLGYGGHTMRMLEQLH 89

Query: 59  --SNVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLG 112
              ++ ALD DP  +   ++ + D     +  ++ Q  F  +     + G  D ++ DLG
Sbjct: 90  GEGHMYALDVDPIEIVKTKQRLADAGYGEDILTIKQTNFRNIDKVAEEAGKFDFILADLG 149

Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASR 171
           VSSMQID  DRGF+++  GPLD+R+    G SA++ + + + ++L  +     +E  A  
Sbjct: 150 VSSMQIDNPDRGFTYKFDGPLDLRLDPEKGESAAERLREVSYEELVGMFQENSDEPYAEE 209

Query: 172 IAHAIVKR-RQSAPFQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEI 225
           IA  I+KR R     +TT  +   I++ + F      K        R FQALRI VN+E 
Sbjct: 210 IATVIMKRNRTKNYVETTIQMKEAIEEALSFVPEKERKEAVKKSCQRCFQALRIDVNSEF 269

Query: 226 EELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF 285
           E L   L     AL+ GG + +++FHS EDRLVK+ F               + A   V+
Sbjct: 270 EVLYDFLDKLPDALRPGGRVAILTFHSGEDRLVKRAFK--------------AGAKAGVY 315

Query: 286 QSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
             ++K V+ P+ E+ A N R+RS K+R  ++
Sbjct: 316 SEVSKDVIRPSAEECARNPRARSTKMRWAVK 346


>gi|187918180|ref|YP_001883743.1| S-adenosyl-methyltransferase MraW [Borrelia hermsii DAH]
 gi|263445877|sp|B2S017|RSMH_BORHD RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|119861028|gb|AAX16823.1| S-adenosyl-methyltransferase MraW [Borrelia hermsii DAH]
          Length = 297

 Score =  303 bits (777), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 101/308 (32%), Positives = 164/308 (53%), Gaps = 24/308 (7%)

Query: 20  HVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCG 74
           H PVLL+++I LL       G + +D T G GG+S +  +   N  VI ++RD   ++  
Sbjct: 6   HTPVLLDEIINLLEIVYVNDGFIFVDCTLGEGGHSSAVLRKYQNISVIGIERDDIILNRA 65

Query: 75  QETMRDYKEQFSLFQATFSQL-QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           +E + ++K + S F A F     +Y      + ++ DLG+S        RGFSF +   L
Sbjct: 66  KEFLVEFKGKVSYFNAWFDDFFSEYSLSSKANFILADLGISMFHYKMSGRGFSFFEDERL 125

Query: 134 DMRMSCS--GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           DMR++    G+SA D+VN  +   L  ++   G E  + RI  +I++ R+    +T+++L
Sbjct: 126 DMRLNPGAGGLSAYDIVNTFDKVRLENLIYEFGGEHYSKRIVSSILEYRKIKKIKTSREL 185

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             +I K     K  +I+PAT++FQALRI+VN+E+  L + L     +L   G+L +++FH
Sbjct: 186 QGIISKAYPRIKL-KINPATKTFQALRIYVNDELFRLKRSLPLWVGSLSRNGILAIITFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLED++VK+FF   S +                   +TKK ++ + E+   N  SRSAKL
Sbjct: 245 SLEDKIVKEFFKGLSKEQYC---------------ILTKKPIIASFEEKRCNNASRSAKL 289

Query: 312 RAGMRTVE 319
           RA  +  E
Sbjct: 290 RAIRKLYE 297


>gi|94498181|ref|ZP_01304742.1| S-adenosyl-methyltransferase [Sphingomonas sp. SKA58]
 gi|94422311|gb|EAT07351.1| S-adenosyl-methyltransferase [Sphingomonas sp. SKA58]
          Length = 312

 Score =  303 bits (777), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 131/319 (41%), Positives = 193/319 (60%), Gaps = 13/319 (4%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83
           LL++V+  L  APG++ +D TFGAGGYS +  + G+ V A DRDP A+  G+     +  
Sbjct: 2   LLDEVLDALAIAPGEIHVDGTFGAGGYSSAMAQAGARVFAFDRDPDAIREGRAVADAHG- 60

Query: 84  QFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS 140
             +L    FS++   + ++ VD   GV  D+GVSSMQ+D  +RGFSFQ  GPLDM MS  
Sbjct: 61  -ITLIPGEFSRMAQLLTERDVDRVAGVTLDIGVSSMQLDRPERGFSFQSDGPLDMTMSQG 119

Query: 141 GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVY 200
           G+SA+D +N A  +D+  ++   GEE ++ R+A AIV  R   P + T  L+++++K + 
Sbjct: 120 GMSAADFLNSAPEEDIADVIYRYGEEPRSRRVARAIVDAR---PLERTAQLAAVVRKALG 176

Query: 201 FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKK 260
           +  +++  PATR+FQA+RI VN E+EEL +GL +AE  L+ GG L +V+FHSLEDR+VK+
Sbjct: 177 YKPHDKKDPATRTFQAIRIHVNRELEELERGLEAAEALLEEGGRLAIVTFHSLEDRIVKQ 236

Query: 261 FFASRS-GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319
           F  +RS G+    RH+    A P    +   K V     ++A N R+RSA LR+ +RT  
Sbjct: 237 FLRNRSGGEGGGSRHLPERTAGPQPTFARPAKAVRAGDAELARNPRARSATLRSAVRTAA 296

Query: 320 RSIEDDSFVHLPRLPTLSQ 338
            S         P LP  S+
Sbjct: 297 PSR----LSLAPSLPRSSR 311


>gi|198282533|ref|YP_002218854.1| S-adenosyl-methyltransferase MraW [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218665162|ref|YP_002424723.1| S-adenosyl-methyltransferase MraW [Acidithiobacillus ferrooxidans
           ATCC 23270]
 gi|263433385|sp|B5ELD1|RSMH_ACIF5 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263433699|sp|B7J3W0|RSMH_ACIF2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|198247054|gb|ACH82647.1| S-adenosyl-methyltransferase MraW [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218517375|gb|ACK77961.1| S-adenosyl-methyltransferase MraW [Acidithiobacillus ferrooxidans
           ATCC 23270]
          Length = 321

 Score =  303 bits (776), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 123/318 (38%), Positives = 170/318 (53%), Gaps = 14/318 (4%)

Query: 12  AIHHTIGDHVPVLLEKVIALLNPA----PGKVILDATFGAGGYSRSFCKMG---SNVIAL 64
           + +     HV VLL + I  L PA         +DAT G GG+S +          ++ L
Sbjct: 3   SANEPDATHVAVLLAETIVALRPALHTGAAVRCVDATGGRGGHSAALLAELGAADTLLIL 62

Query: 65  DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCG 121
           DRDP A++  +        +  + QA FSQL + +     + VD ++ DLGVSS Q+D  
Sbjct: 63  DRDPSAIAALRARFAQ-DSRVYIRQARFSQLAEVLAALEWERVDAILADLGVSSPQLDEA 121

Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
            RGFSF + GPLDMRM   +  SA++ +  A   D+TR+L   GEE+ A  IA AI++ R
Sbjct: 122 ARGFSFLRDGPLDMRMDPGADRSAAEWLATATEADMTRVLREYGEERFARPIARAILRAR 181

Query: 181 QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           + AP   T  L+ LI + +        HPATRSFQ +RIF+N E+EEL   L  A  AL+
Sbjct: 182 EQAPITRTLQLAELIAQVLP-RHETGQHPATRSFQGIRIFINRELEELEAFLPQAMNALR 240

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300
           AGG L V+SFHSLEDRLVK+FF +   ++ A   +  S   P  +     K +     + 
Sbjct: 241 AGGRLAVISFHSLEDRLVKRFFRADDYRISADVPLRASELPPLPWHP-AGKALRAGPRET 299

Query: 301 AFNRRSRSAKLRAGMRTV 318
             N RSRSA LR   R+ 
Sbjct: 300 RDNPRSRSAVLRVAERSE 317


>gi|291551135|emb|CBL27397.1| S-adenosyl-methyltransferase MraW [Ruminococcus torques L2-14]
          Length = 359

 Score =  303 bits (776), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 97/318 (30%), Positives = 165/318 (51%), Gaps = 29/318 (9%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70
           +   G H+ +++ +++  L   PG+   DAT G GG++++  +      ++ A D DP  
Sbjct: 54  NTPAGMHISIMVNEILDFLKIQPGETGFDATLGYGGHTKAMLERLKGEGHIYATDVDPEE 113

Query: 71  VSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFS 126
            +  ++ + D     +  S+    F  + +   + G  D ++ DLGVSSMQID   RGFS
Sbjct: 114 SAKTRKRLADQGFGEDILSIRLQNFCTIDEIAKEVGGFDFILADLGVSSMQIDNPKRGFS 173

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV-KRRQSAP 184
           F+ +GPLD+R++   GISA++ ++  + ++L  +L    +E     +A AI  + R+   
Sbjct: 174 FKVNGPLDLRLNQEKGISAAERLDNISEEELAGMLYENSDEPYCEELAKAITTEIRKGNR 233

Query: 185 FQTTQDLSSLIQKTVYFSKNNR------IHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
             TT  L ++I+KT+ F  NN+           R+FQALRI VNNE E L + +     A
Sbjct: 234 IDTTTKLRNVIEKTLDFLPNNKEKKDIIKKTCQRTFQALRIDVNNEFEVLYEFMEKLPGA 293

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           LK GG + +++FHS ED+LVKK                 +     ++    + VV P+ +
Sbjct: 294 LKPGGRVAILTFHSGEDKLVKKALK--------------AGYKEGIYSEYARDVVRPSAQ 339

Query: 299 DVAFNRRSRSAKLRAGMR 316
           + A N R+RS K+R  ++
Sbjct: 340 ECAQNGRARSTKMRWAVK 357


>gi|195444651|ref|XP_002069965.1| GK11803 [Drosophila willistoni]
 gi|194166050|gb|EDW80951.1| GK11803 [Drosophila willistoni]
          Length = 368

 Score =  303 bits (776), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 127/349 (36%), Positives = 178/349 (51%), Gaps = 38/349 (10%)

Query: 1   MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--G 58
           +  K  +  SS+       HVPVL E  I  LNP      LD TFGAGG++R        
Sbjct: 25  LRPKYARQTSSS------PHVPVLCEVAIEYLNPKRNGNYLDMTFGAGGHTRRLLDTCSD 78

Query: 59  SNVIALDRDPFAVSCGQETM--RDYKEQFSLFQATFSQLQDYVPDKG-----VDGVVFDL 111
             V ALDRDP A     E     +YK +       FS L   +  +       DG+++D 
Sbjct: 79  CKVYALDRDPLAHQLAIEMSQKEEYKGRLVPLFGKFSDLPQLLDGQNLSRNSFDGMLYDF 138

Query: 112 GVSSMQIDCGDRGFSFQKSGPLDMRMSCSG---ISASDVVNQANVKDLTRILGILGEEKQ 168
           G SSMQ D  +RGFS  ++GPLDMRM       ISA+DV+ +A   DL RIL + GEEK 
Sbjct: 139 GCSSMQFDVANRGFSISQNGPLDMRMDGGRGGGISAADVLARAEEDDLARILRVYGEEKA 198

Query: 169 ASRIAHAIVKRR-QSAPFQTTQDLSSLIQKTVYFSKNNR------IHPATRSFQALRIFV 221
           A +IA AIV+ R      +TT+ L+ L+   +  S + +       H AT++FQALRIFV
Sbjct: 199 AKKIARAIVEARGALQRIETTKQLADLVAAVLGDSSHRQDKLQRPSHAATKTFQALRIFV 258

Query: 222 NNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH 281
           NNE+ E+  G+  A + L   G L+ ++FHSLED +VK+       +  A    +    H
Sbjct: 259 NNELNEINYGMLLANEVLCPEGRLVAITFHSLEDTIVKRHLNGNVIEGRANPVPLKYCGH 318

Query: 282 -------------PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
                           ++ + + V++P  E++A N RSRSAKLRA ++ 
Sbjct: 319 DVTLDPQLMQSFVQIKWRQLHRHVILPDAEEIARNSRSRSAKLRAAIKI 367


>gi|293603437|ref|ZP_06685862.1| S-adenosyl-methyltransferase MraW [Achromobacter piechaudii ATCC
           43553]
 gi|292818139|gb|EFF77195.1| S-adenosyl-methyltransferase MraW [Achromobacter piechaudii ATCC
           43553]
          Length = 365

 Score =  303 bits (776), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 119/350 (34%), Positives = 181/350 (51%), Gaps = 36/350 (10%)

Query: 19  DHVPVLLEKVIALL---------------NPAPG-------KVILDATFGAGGYSRSFCK 56
           +H PVLLE  +  L                  P         V +D TFG GG+SR    
Sbjct: 4   EHRPVLLEPTVDALLLPDFGGKGAARSHSQIEPDTATRADRGVFVDGTFGRGGHSRELLG 63

Query: 57  MGS---NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFD 110
                  ++  D+DP A++           + ++    F+ + + +   G   VDGV+ D
Sbjct: 64  RLGKSARLVVFDKDPEAIAVANAL-AATDSRVTVVHGGFATMAEELQQLGIDKVDGVMLD 122

Query: 111 LGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQA 169
           LGVSS QID  +RGFSF + GPLDMRM  + G + ++ + QA+V ++  ++   GEE+ A
Sbjct: 123 LGVSSPQIDDAERGFSFMRDGPLDMRMDTTRGPTVAEWLAQASVDEMREVIADYGEERFA 182

Query: 170 SRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELA 229
            ++A AI  RR + P  TT +L+  +   V  ++    HPATR+FQALRI++N E+EELA
Sbjct: 183 FQVAKAIAARRATRPLCTTLELAECVASAV-RTREKGQHPATRTFQALRIYINRELEELA 241

Query: 230 QGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF--ASRSGKVMAVRHMIPSNAHPAVFQS 287
           + L +A + L  GG L V+SFHSLEDR+VK+    A+R     A   +  S     + +S
Sbjct: 242 RTLAAALELLAPGGRLAVISFHSLEDRMVKQCIVAAARPAAAHARLPLRESEMPQPILRS 301

Query: 288 ITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDDSFVHLPRLPTLS 337
           + +  V    ++VA N R+RSA LR   RT E  +  +      ++ +L 
Sbjct: 302 LGR--VQAEDDEVAGNARARSAVLRVAERT-ETPLPPEGGFAFVKIGSLP 348


>gi|326564327|gb|EGE14557.1| S-adenosyl-methyltransferase MraW [Moraxella catarrhalis 103P14B1]
 gi|326565092|gb|EGE15285.1| S-adenosyl-methyltransferase MraW [Moraxella catarrhalis 46P47B1]
 gi|326570013|gb|EGE20059.1| S-adenosyl-methyltransferase MraW [Moraxella catarrhalis BC7]
 gi|326574697|gb|EGE24633.1| S-adenosyl-methyltransferase MraW [Moraxella catarrhalis 101P30B1]
          Length = 330

 Score =  303 bits (776), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 110/326 (33%), Positives = 174/326 (53%), Gaps = 25/326 (7%)

Query: 9   MSSAIH-HTIGDHVPVLLEKVIAL------LNP---APGKVILDATFGAGGYSRSFCKMG 58
           MS+ I       H  VLL + +A+      LN        V +DATFG GG+S+   +  
Sbjct: 1   MSNTISTSDEFSHTTVLLPETVAMVLGVKQLNDVTSKVSGVYVDATFGRGGHSQLLLEYL 60

Query: 59  S---NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLG 112
           +    +   D+DP A++   +++     +  +   +F+ L   +   G+D   G++ DLG
Sbjct: 61  APEATLAVFDKDPEAIAVA-KSLAAQDTRIKVVHDSFAHLTKNLQALGIDKIDGLMADLG 119

Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASR 171
           VSS Q+D G RGFSF + G +DMRM  + G   S+ + + +  +L  +L   GEE+ + +
Sbjct: 120 VSSPQLDDGTRGFSFMRDGVVDMRMDTTRGEPVSEWLQRVSADELADVLYEYGEERHSRK 179

Query: 172 IAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQG 231
           IA AI   +    + +T+ L+ +I++     +  + HPAT+SFQA+RIF+NNE+ ++   
Sbjct: 180 IARAI---KSMQNYTSTRQLAEVIKQAHPAWQKGK-HPATQSFQAMRIFINNELGDVEAF 235

Query: 232 LRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQSITK 290
           L  +   LKAGG+L V+SFHSLEDRL+K+F    S G+      +      P  F     
Sbjct: 236 LAQSIGVLKAGGMLAVISFHSLEDRLIKQFLQRHSRGQYEEDARLPIIPKRPKYFGK--P 293

Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMR 316
           K V P  ++V  N R+RSA LR  +R
Sbjct: 294 KRVGPCDQEVKANPRARSAWLRGAVR 319


>gi|261749334|ref|YP_003257019.1| S-adenosyl-methyltransferase MraW [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
 gi|261497426|gb|ACX83876.1| S-adenosyl-methyltransferase MraW [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
          Length = 297

 Score =  302 bits (775), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 106/304 (34%), Positives = 156/304 (51%), Gaps = 19/304 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H PVLL++ I  L      + +D TFG GG+S +  K     +++IA D+D  A+     
Sbjct: 5   HEPVLLKESIDNLVTDRNGIYVDVTFGGGGHSSAILKKLNENASLIAFDQDKEAIKNNPI 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +  LF   F  L+  +     + V GV+ DLG+SS QID   RGFS Q +  L
Sbjct: 65  R----DRRLHLFHKNFIHLKPILKKLRIEKVSGVLADLGLSSSQIDNPIRGFSHQLNCIL 120

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+  S  SA D++N+ + ++L  I    GE K A  IA  I++ R   P  TT DL 
Sbjct: 121 DMRMNQESTHSAIDIINRYSKEELFHIFYKYGEFKNAIIIAEKILEERLRKPITTTWDLV 180

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +  +    S   R    +R FQ++RI VNNEI  L   L  +   +  GG + ++S+HS
Sbjct: 181 KIFFRK-KTSFKKRKRFFSRLFQSIRIEVNNEINVLKNFLLESSTIILPGGRMAIISYHS 239

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           +EDR+ K FF         + +++P       F+ I KKV+ P  +D+  N RSRSA+LR
Sbjct: 240 IEDRITKYFFKKGVFHKKKMNNILP-------FKMIHKKVIQPRYQDIINNPRSRSARLR 292

Query: 313 AGMR 316
              +
Sbjct: 293 IAEK 296


>gi|302849292|ref|XP_002956176.1| hypothetical protein VOLCADRAFT_97159 [Volvox carteri f.
           nagariensis]
 gi|300258479|gb|EFJ42715.1| hypothetical protein VOLCADRAFT_97159 [Volvox carteri f.
           nagariensis]
          Length = 305

 Score =  302 bits (775), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 109/318 (34%), Positives = 161/318 (50%), Gaps = 35/318 (11%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETM-R 79
           +L +V+    P    V LD T GAGG++            ++ +D DP A    +  +  
Sbjct: 1   MLNEVLDAFQPVTLNVYLDCTLGAGGHAAKIASAHPEMQMLLGIDLDPTAHVVAEPRIRA 60

Query: 80  DYKEQ-----FSLFQATFSQLQDYV-----PDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
           +   +       L +  +  L+  +     P    +G++ DLG+SSMQID  DRGFSF +
Sbjct: 61  EAAGRSARLDVRLLRGNYRDLKRLLATVSTPSPRPNGILMDLGISSMQIDTADRGFSFMR 120

Query: 130 SGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
            GPLDMRM  +  +SA +V+N  +  +L RI+   GEEK    +A  IV+ R+ AP +TT
Sbjct: 121 DGPLDMRMDPTAALSAEEVLNTWSEAELGRIIRDFGEEKLWKVVARRIVQAREVAPIRTT 180

Query: 189 QDLS------SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
           Q L        L+ K+   +    IHPATR+FQALRI VN+E+++L + L  A  AL  G
Sbjct: 181 QQLVKAVGQTQLVGKSPRKASAKGIHPATRTFQALRIAVNDELQKLEKTLPDAIDALAPG 240

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G L V+SFHSLEDR+VK  F   +G+       +      A+              +   
Sbjct: 241 GRLAVISFHSLEDRIVKHAFMRAAGRPTPEEENLVYGQDNAL--------------ETEA 286

Query: 303 NRRSRSAKLRAGMRTVER 320
           N R+RSAKLR   +  ++
Sbjct: 287 NARARSAKLRILQKLPDK 304


>gi|225549158|ref|ZP_03770133.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi 94a]
 gi|225370384|gb|EEG99822.1| S-adenosyl-methyltransferase MraW [Borrelia burgdorferi 94a]
          Length = 296

 Score =  302 bits (774), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 98/305 (32%), Positives = 169/305 (55%), Gaps = 24/305 (7%)

Query: 20  HVPVLLEKV---IALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           H PVLL+ +   I  L      + +D+T G G ++++  +     +++ ++RDP  +   
Sbjct: 7   HFPVLLDAICKLIEDLPVKSDLIYIDSTLGEGVHAKAILEKYDFLSLVGIERDPQILERA 66

Query: 75  QETMRDYKEQFSLFQATFSQLQ-DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           ++ +  ++E+ + F   F     +Y  +   + ++ DLG+S        +GFSF +  PL
Sbjct: 67  RQFLSIFEERITYFNDWFDNFFVNYPLNVKANFILVDLGISMFHYKGSKKGFSFLEDEPL 126

Query: 134 DMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           DMR+  S   ISA+++VN  +  DL  ++  L  E  + RI+ AIV+ R+    +TT++L
Sbjct: 127 DMRLCSSSCKISAAEIVNTYSKYDLEALIYDLSNEHYSRRISKAIVEYRKIKKIETTKEL 186

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            S+I K   FSK  +I+PAT++FQALRI+VN+E+  L + L    + L   G+L +++FH
Sbjct: 187 QSIISKVYPFSKV-KINPATKTFQALRIYVNDELTRLKRSLPFWVENLAKDGILAIITFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           S+EDR+VK FF S S                 ++  I+KK ++P+  ++  N+ SRSAKL
Sbjct: 246 SIEDRIVKDFFRSLSCD---------------LYAKISKKPIMPSFGEIKKNKPSRSAKL 290

Query: 312 RAGMR 316
           R   +
Sbjct: 291 RVIKK 295


>gi|331084062|ref|ZP_08333169.1| ribosomal RNA small subunit methyltransferase H 1 [Lachnospiraceae
           bacterium 6_1_63FAA]
 gi|330402424|gb|EGG81994.1| ribosomal RNA small subunit methyltransferase H 1 [Lachnospiraceae
           bacterium 6_1_63FAA]
          Length = 349

 Score =  302 bits (774), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 99/331 (29%), Positives = 161/331 (48%), Gaps = 31/331 (9%)

Query: 3   SKSCKTMSSAIHH---TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---K 56
            K   T+   I       G H+ + +++++  L   PG++ LDAT G GG+S       +
Sbjct: 32  EKYADTIEKVIQKGGTPAGMHISICVQEILDFLQIQPGQIGLDATLGYGGHSSKMLGCLE 91

Query: 57  MGSNVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLG 112
              ++ ALD DP  +   +E +       +  ++ Q  F+ +     + G  D V+ DLG
Sbjct: 92  GKGHLYALDVDPIEIKKTKERLEKMDYKEDILTIKQMNFADVDQLKEEAGGFDFVLADLG 151

Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASR 171
           VSSMQID  +RGF+++  GPLD+R++   GIS ++ +   +  +L  +L    +E  A  
Sbjct: 152 VSSMQIDNPERGFTYKFEGPLDLRLNPEKGISVAERLKDISQPELEGMLIENSDEPYAKE 211

Query: 172 IAHAIV-KRRQSAPFQTTQDLSSLIQKT---VYFSKNNR--IHPATRSFQALRIFVNNEI 225
           I++ I+ + R+  P  TT  L   ++K    +   +          R+FQALRI VN+E 
Sbjct: 212 ISNTIISEIRRGNPITTTTQLQKAVEKALVRIPEKERKEMVKKSCARTFQALRIDVNSEF 271

Query: 226 EELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF 285
           E L   +      L  G  + +++FHS EDRLVKK F                     V+
Sbjct: 272 EVLEAFMEKLPTVLNKGARVAILTFHSGEDRLVKKAFQRF--------------YREGVY 317

Query: 286 QSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
             I+K V+ P+ E+ A N RSRS K+R  ++
Sbjct: 318 SEISKDVIRPSAEECARNSRSRSTKMRWAIK 348


>gi|197304029|ref|ZP_03169061.1| hypothetical protein RUMLAC_02766 [Ruminococcus lactaris ATCC
           29176]
 gi|197296997|gb|EDY31565.1| hypothetical protein RUMLAC_02766 [Ruminococcus lactaris ATCC
           29176]
          Length = 351

 Score =  302 bits (774), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 94/327 (28%), Positives = 167/327 (51%), Gaps = 29/327 (8%)

Query: 5   SCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNV 61
           + + +    +   G H+ +++++++  L+  PG+   DAT G GG++++  +      ++
Sbjct: 38  TVEHVIRKGNTPAGMHISIMVKEILDFLDIQPGQTGFDATLGYGGHTKAMLECLKGQGHI 97

Query: 62  IALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQ 117
            A D DP   +  ++ + +     E  ++    F  + +     G  D ++ DLGVSSMQ
Sbjct: 98  YATDVDPEESAKTKKRLEEQGFGEEILTVCLQNFCTIDEIAEKVGGFDFILADLGVSSMQ 157

Query: 118 IDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
           ID   RGFSF+  GPLD+R++   GISA++ ++  + ++L  +L    +E     +A AI
Sbjct: 158 IDNPKRGFSFKADGPLDLRLNQEKGISAAERLDTISREELAGMLYENSDEPYCEELAKAI 217

Query: 177 VKR-RQSAPFQTTQDLSSLIQKTVYFSKNNR------IHPATRSFQALRIFVNNEIEELA 229
               R+     TT  L ++I+KT+ F  +N+           R+FQALRI VNNE E L 
Sbjct: 218 TDEIRRGNRIDTTTKLRNVIEKTLSFLPDNKEKKDIVKKTCQRTFQALRIDVNNEFEVLY 277

Query: 230 QGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT 289
           + +     AL+ GG + +++FHS ED+LVKK                 +     ++    
Sbjct: 278 EFMEKLPDALRPGGRVAILTFHSGEDKLVKKALK--------------AGYKAGIYSDYA 323

Query: 290 KKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           K V+ P+ ++ A N R+RS K+R  ++
Sbjct: 324 KDVIRPSAQECAKNGRARSTKMRWAVK 350


>gi|331085870|ref|ZP_08334953.1| ribosomal RNA small subunit methyltransferase H 1 [Lachnospiraceae
           bacterium 9_1_43BFAA]
 gi|330406793|gb|EGG86298.1| ribosomal RNA small subunit methyltransferase H 1 [Lachnospiraceae
           bacterium 9_1_43BFAA]
          Length = 374

 Score =  302 bits (774), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 101/334 (30%), Positives = 167/334 (50%), Gaps = 31/334 (9%)

Query: 3   SKSCKTMSSAIHH---TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG- 58
            K  +T+   I      +G H+ + +++++  L   PG+  LDAT G GG+++   K   
Sbjct: 55  EKYPETIEKVIQKGGTPVGMHISICVKEILDFLQIQPGQKGLDATLGYGGHTKEMLKCLQ 114

Query: 59  --SNVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLG 112
              ++ ALD DP      +E +       E  ++ Q  F+ +     + G  D V+ DLG
Sbjct: 115 GQGHLYALDVDPIESVKTKERLEKAGYGEEILTIRQMNFADIDQIAREAGPFDFVLADLG 174

Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASR 171
           VSSMQID  +RGF+++K GPLD+R++   G+SA++ + +   ++L  +L    +E  A  
Sbjct: 175 VSSMQIDNPERGFTYKKEGPLDLRLNPQKGVSAAERLKEVTEEELAGMLWENSDEPYAEE 234

Query: 172 IAHAIVKR-RQSAPFQTTQDLSSLIQKTVYFSKNNR-----IHPATRSFQALRIFVNNEI 225
           IA  ++++ R+  P +TT  L   I++ + F               R+FQALRI VN+E 
Sbjct: 235 IAATVMEKLRKGEPVETTIQLQKAIEEALSFLPEREQKEAVKKSCQRTFQALRIDVNSEF 294

Query: 226 EELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF 285
           E L   +     AL  GG + +++FHS EDR+VKK F                     ++
Sbjct: 295 EVLYAFMEKLPAALAPGGRVAILTFHSGEDRIVKKAFKELK--------------RAGIY 340

Query: 286 QSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319
             I + V+ P+ E+   N R+RS K+R  +R  E
Sbjct: 341 SEIAQDVIRPSAEECTRNSRARSTKMRWAVRAKE 374


>gi|325662020|ref|ZP_08150639.1| ribosomal RNA small subunit methyltransferase H 1 [Lachnospiraceae
           bacterium 4_1_37FAA]
 gi|325471683|gb|EGC74902.1| ribosomal RNA small subunit methyltransferase H 1 [Lachnospiraceae
           bacterium 4_1_37FAA]
          Length = 374

 Score =  302 bits (773), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 101/334 (30%), Positives = 167/334 (50%), Gaps = 31/334 (9%)

Query: 3   SKSCKTMSSAIHH---TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG- 58
            K  +T+   I      +G H+ + +++++  L   PG+  LDAT G GG+++   K   
Sbjct: 55  EKYPETIEKVIQKGGTPVGMHISICVKEILDFLQIQPGQKGLDATLGYGGHTKEMLKCLQ 114

Query: 59  --SNVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLG 112
              ++ ALD DP      +E +       E  ++ Q  F+ +     + G  D V+ DLG
Sbjct: 115 GQGHLYALDVDPIESVKTKERLEKAGYGEEILTIRQMNFADIDQIAREAGPFDFVLADLG 174

Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASR 171
           VSSMQID  +RGF+++K GPLD+R++   G+SA++ + +   ++L  +L    +E  A  
Sbjct: 175 VSSMQIDNPERGFTYKKEGPLDLRLNPQKGVSAAERLKEVTEEELAGMLWENSDEPYAEE 234

Query: 172 IAHAIVKR-RQSAPFQTTQDLSSLIQKTVYFSKNNR-----IHPATRSFQALRIFVNNEI 225
           IA  ++++ R+  P +TT  L   I++ + F               R+FQALRI VN+E 
Sbjct: 235 IAVTVMEKLRKGEPVETTIQLQKAIEEALSFLPEREQKEAVKKSCQRTFQALRIDVNSEF 294

Query: 226 EELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF 285
           E L   +     AL  GG + +++FHS EDR+VKK F                     ++
Sbjct: 295 EVLYAFMEKLPAALAPGGRVAILTFHSGEDRIVKKAFKELK--------------RAGIY 340

Query: 286 QSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319
             I + V+ P+ E+   N R+RS K+R  +R  E
Sbjct: 341 SEIAQDVIRPSAEECTRNSRARSTKMRWAVRAKE 374


>gi|319440248|ref|ZP_07989404.1| 16S rRNA m(4)C1402 methyltranserfase [Corynebacterium variabile DSM
           44702]
          Length = 340

 Score =  302 bits (773), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 106/325 (32%), Positives = 173/325 (53%), Gaps = 29/325 (8%)

Query: 9   MSSAIHHTIGD--HVPVLLEKVIALL--------NPAPGKVILDATFGAGGYSRSFCKMG 58
           MS       G+  HVPV+ ++++ L+           P  VI+D T GAGG++  F +  
Sbjct: 1   MSEPSGRISGEFGHVPVMRDRMVELVGAGVEGTGATRP--VIVDGTLGAGGHTEVFLETF 58

Query: 59  SN--VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD-------------KG 103
            +  V+ LDRDP A++  Q+ +  + ++F  ++  F  L D + D              G
Sbjct: 59  PDAVVVGLDRDPNAIAQAQDRLARFGDRFIAYRTRFDGLGDALDDLASDGRLPGEFATTG 118

Query: 104 VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGI 162
           V G +FDLGVSSMQ+D  +RGF++ +  PLDMRM   S ++A++V+N  +  DL  +L  
Sbjct: 119 VSGYLFDLGVSSMQLDQAERGFAYSQDAPLDMRMDPDSPLTAAEVLNTYSHGDLAHVLSA 178

Query: 163 LGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFV 221
            G+E+ A +IA A+++ R+  PF T+  L  L+ +T+  + +    HPA R+FQALR+ V
Sbjct: 179 YGDERFAGKIASAVLREREQEPFTTSGRLVELLYRTIPAATRRTGGHPAKRTFQALRVEV 238

Query: 222 NNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH 281
           N E++ LA  + +A   L  GG+ + +S+ SLED++VKK  A  +         +     
Sbjct: 239 NAELDSLAAVIPAATARLGLGGVAVFMSYQSLEDKIVKKALAELTANRTPPGLPVDLPDT 298

Query: 282 PAVFQSITKKVVVPTQEDVAFNRRS 306
            A F  +T+        ++  N RS
Sbjct: 299 AASFDLVTRGAEKADAAEIERNPRS 323


>gi|291539383|emb|CBL12494.1| S-adenosyl-methyltransferase MraW [Roseburia intestinalis XB6B4]
          Length = 350

 Score =  302 bits (773), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 96/326 (29%), Positives = 164/326 (50%), Gaps = 28/326 (8%)

Query: 5   SCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNV 61
           + + +    +   G H+ +++++++  LN  PG+   DAT G GG++++         ++
Sbjct: 38  TIEHVIKKGNTPAGMHISIMVQEILDTLNIQPGETGFDATLGYGGHTKAMLACLNGQGHI 97

Query: 62  IALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQ 117
            A D DP   +  ++ + +     +  ++    F  + +   + G  D ++ DLGVSSMQ
Sbjct: 98  YATDVDPEESAKTKKRLEELGYGEDILTIRLQNFCTIDEIAKEAGGFDFILADLGVSSMQ 157

Query: 118 IDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
           ID   RGFSF+  GPLD+R++   GISA++ ++    ++L  +L    +E     +A AI
Sbjct: 158 IDNPKRGFSFKVDGPLDLRLNQEAGISAAERLDTITREELAGMLYENSDEPYCEELAKAI 217

Query: 177 VKR-RQSAPFQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQ 230
               R+ +   TT  L  +I+KT+ F      K+       R+FQALRI VN E E L +
Sbjct: 218 TDEIRKGSRIDTTTKLREVIEKTLDFLPEKEKKDTIKKTCQRTFQALRIDVNREFEVLYE 277

Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK 290
            +     ALK GG + +++FHS ED+LVKK                       ++   +K
Sbjct: 278 FMEKLPDALKPGGRVAILTFHSGEDKLVKKALKE--------------GCRAGIYADYSK 323

Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMR 316
            VV P+ ++ A N R+RS K+R  +R
Sbjct: 324 DVVRPSAQECAQNGRARSTKMRWAVR 349


>gi|320533237|ref|ZP_08033944.1| S-adenosyl-methyltransferase MraW [Actinomyces sp. oral taxon 171
           str. F0337]
 gi|320134542|gb|EFW26783.1| S-adenosyl-methyltransferase MraW [Actinomyces sp. oral taxon 171
           str. F0337]
          Length = 329

 Score =  301 bits (772), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 111/314 (35%), Positives = 171/314 (54%), Gaps = 24/314 (7%)

Query: 17  IGDHVPVLLEKVIALLNPAPGK-------------VILDATFGAGGYSRSFCKMGS--NV 61
           +G H PVLLE+ + LL PA                V++D T G GG++ +  +      V
Sbjct: 14  VGRHQPVLLERCLDLLAPAIEGHADSTSTGGPARPVMIDCTLGMGGHTEAALERFPALKV 73

Query: 62  IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVSS 115
           + +DRDP A++     +  + ++F   QAT+  +     +        VD V+ DLGVSS
Sbjct: 74  VGIDRDPEAIALASARLARFGDRFIAVQATYDAVNRVAREHSARAEGAVDAVLMDLGVSS 133

Query: 116 MQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAH 174
           +Q+D   RGFS+ +  PLDMRM   SG++A D++  A+  +L+RIL   GEE+ ASRIA 
Sbjct: 134 LQLDEASRGFSYARPAPLDMRMDQGSGMTAQDLLETADAVELSRILRTYGEERFASRIAA 193

Query: 175 AIVKRRQSA-PFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGL 232
           AIV+RRQ+  P  +TQDL+ L+++ V   ++ +  HPA R+FQALRI VN E++ L + +
Sbjct: 194 AIVRRRQAGEPVVSTQDLAELVRQAVPAPARRSGGHPAKRTFQALRIAVNAELDVLERAV 253

Query: 233 RSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKV 292
             A  +L+ GG L+V S+ SLEDR+VK+  A  +         +         + +T   
Sbjct: 254 PRALNSLRVGGRLVVESYQSLEDRIVKRALAHGATSRAPQDLPVVPETDRPYLELLTSGA 313

Query: 293 VVPTQEDVAFNRRS 306
                 ++  N RS
Sbjct: 314 EKADARELDHNPRS 327


>gi|148828289|ref|YP_001293042.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae PittGG]
 gi|263456035|sp|A5UIQ3|RSMH_HAEIG RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|148719531|gb|ABR00659.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae PittGG]
          Length = 289

 Score =  301 bits (772), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 109/292 (37%), Positives = 160/292 (54%), Gaps = 18/292 (6%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M+S    +  +H+ VLL + +  L      + +D TFG GG+SR           +IA+D
Sbjct: 1   MNSENSFSSSEHITVLLHEAVNGLALKENGIYIDGTFGRGGHSRFILSQLSSNGRLIAVD 60

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCG 121
           RDP A++   +       +F +   +FS + +          +DG++ DLGVSS Q+D  
Sbjct: 61  RDPRAIAEAHKI---QDLRFQIEHNSFSHIPEICDKLNLVGKIDGILLDLGVSSPQLDEA 117

Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF K GPLDMRM  + G+SA + + Q +++DLT +L   GEE+ A RIA AIV   
Sbjct: 118 ERGFSFMKDGPLDMRMDTTQGLSAEEWLKQVSIEDLTWVLKTFGEERFAKRIATAIVDFN 177

Query: 181 QSAP------FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234
           +SA          T  L+ LI + V F K+   HPATRSFQA+RIF+N+E++EL   L S
Sbjct: 178 KSAVKNGTEFLSRTSQLAELISQAVPF-KDKHKHPATRSFQAIRIFINSELDELESLLNS 236

Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ 286
           A   L   G L ++SFHSLEDR+VK F  ++    +  +         +V +
Sbjct: 237 ALDMLAPEGRLSIISFHSLEDRMVKHFMKNKVRARIFPKVYHCEKIKFSVIK 288


>gi|159902730|ref|YP_001550074.1| S-adenosylmethionine-dependent methyltransferase [Prochlorococcus
           marinus str. MIT 9211]
 gi|226709923|sp|A9BD32|RSMH_PROM4 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|159887906|gb|ABX08120.1| Predicted S-adenosylmethionine-dependent methyltransferase
           [Prochlorococcus marinus str. MIT 9211]
          Length = 305

 Score =  301 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 111/314 (35%), Positives = 172/314 (54%), Gaps = 30/314 (9%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVI-----LDATFGAGGYSRSFCKMGS--NVIALDRDP 68
           +  +H PVL  ++I ++   P  +I     +DAT G GG+S    +     +VI LD+DP
Sbjct: 10  STFNHTPVLANELIEIIKKLPEDLIKNCLIIDATIGGGGHSSLVLETFPGISVIGLDQDP 69

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
            AV+   E ++ + ++  +    FS      P K V  V  DLGVSS Q+D G RGFSF+
Sbjct: 70  KAVAAASEHLKIFGDRAKIETTNFSNFT---PSKKVAMVFADLGVSSPQLDEGSRGFSFR 126

Query: 129 KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQ 186
            +GPLDMRM+   G +A++++++ +  +L  ++   GEE+ + RIA  I     +  P+ 
Sbjct: 127 LNGPLDMRMNQIDGTNAAELIDRLSENELANLIFKYGEERFSRRIAKRIKHDLAKQGPYS 186

Query: 187 TTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            T  L+  I        +N R+HPAT++FQALRI +N+E++ L+  L+ A + L   GL 
Sbjct: 187 GTIALAYAIAGCYPPKLRNRRVHPATKTFQALRIAINHELDVLSVLLKKAPEWLLDDGLF 246

Query: 246 IVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
            V+SFHSLEDRLVKK F + +                   + IT+K ++ T  +++ N R
Sbjct: 247 AVISFHSLEDRLVKKSFLTDT-----------------RLERITRKPLIATTNEISINPR 289

Query: 306 SRSAKLRAGMRTVE 319
           SRSAK+R   R   
Sbjct: 290 SRSAKMRVARRIEA 303


>gi|226322767|ref|ZP_03798285.1| hypothetical protein COPCOM_00539 [Coprococcus comes ATCC 27758]
 gi|225208748|gb|EEG91102.1| hypothetical protein COPCOM_00539 [Coprococcus comes ATCC 27758]
          Length = 356

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 96/318 (30%), Positives = 164/318 (51%), Gaps = 29/318 (9%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70
           +   G H+ +++++++  L   PG+V  DAT G GG++++  +      ++ A D DP  
Sbjct: 51  NTPAGMHISIMVQEILDFLKIQPGEVGFDATLGYGGHTKAMLQCLEGKGHIYATDVDPEE 110

Query: 71  VSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFS 126
            +  ++ + +     +  ++    F  + +   + G  D ++ DLGVSSMQID   RGFS
Sbjct: 111 SAKTKKRLEEQGFGEDILTIRLQNFCTIDEIAKEVGGFDFILADLGVSSMQIDNPKRGFS 170

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAP 184
           F+  GPLD+R++   GISA++ ++  + ++L  +L    +E     +A AI +  R+   
Sbjct: 171 FKVDGPLDLRLNQEKGISAAERLDTISREELAGMLYENSDEPYCEELAKAITEEIRKGHR 230

Query: 185 FQTTQDLSSLIQKTVYFSKNNR------IHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
             TT  L  +I++T+ F   N+           R+FQALRI VN+E E L + +     A
Sbjct: 231 IDTTTKLRQVIEQTLSFLPENKEKKDIIRKTCQRTFQALRIDVNHEFEVLYEFMEKLPGA 290

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           LK GG + +++FHS ED+LVKK                 +     V+    K VV P+ E
Sbjct: 291 LKPGGRVAILTFHSGEDKLVKKALK--------------AGYREGVYSEYAKDVVRPSAE 336

Query: 299 DVAFNRRSRSAKLRAGMR 316
           + A N R+RS K+R  ++
Sbjct: 337 ECAQNGRARSTKMRWAVK 354


>gi|325263876|ref|ZP_08130609.1| S-adenosyl-methyltransferase MraW [Clostridium sp. D5]
 gi|324030914|gb|EGB92196.1| S-adenosyl-methyltransferase MraW [Clostridium sp. D5]
          Length = 357

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 101/331 (30%), Positives = 161/331 (48%), Gaps = 31/331 (9%)

Query: 3   SKSCKTMSSAIHH---TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG- 58
            K   T+   I       G H+ + +++++  L   PG+  LDAT G GG++    K   
Sbjct: 40  EKYAGTIEKVIQKGSTPAGMHISICVQEILEFLQIKPGQKGLDATLGYGGHTLEMLKCLE 99

Query: 59  --SNVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLG 112
              ++ ALD DP      +E + +     E  ++    F+ +     + G  D ++ DLG
Sbjct: 100 NQGHIYALDVDPIESQKTKERLSNLGYGPEILTVRLLNFANIDQIAAEAGPFDFILADLG 159

Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASR 171
           VSSMQID  +RGFS++  GPLD+RM+   GISA++ +     ++L  +L    +E  A  
Sbjct: 160 VSSMQIDNPERGFSYKTEGPLDLRMNPEAGISAAERLGTITSEELQGMLVENADEPYAEE 219

Query: 172 IAHAIV-KRRQSAPFQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEI 225
           IA A+V + ++    +TT+ L  +I+  + F      K        R+FQALRI +NNE 
Sbjct: 220 IADAVVLETKKGKKIETTRQLREVIESALSFLPAAERKEAVKKSCQRTFQALRIDINNEF 279

Query: 226 EELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF 285
           E L   L      L  GG   +++FHS EDRLVKK F     + +              +
Sbjct: 280 EVLYAFLDKLPDVLAPGGRAAILTFHSGEDRLVKKSFKRLYNEGI--------------Y 325

Query: 286 QSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
              +K V+ P+ E+   N R+RS K+R  ++
Sbjct: 326 SDYSKDVIRPSAEECIRNSRARSTKMRWAVK 356


>gi|227833499|ref|YP_002835206.1| S-adenosyl-methyltransferase [Corynebacterium aurimucosum ATCC
           700975]
 gi|262184487|ref|ZP_06043908.1| S-adenosyl-methyltransferase MraW [Corynebacterium aurimucosum ATCC
           700975]
 gi|263446134|sp|C3PHG4|RSMH_CORA7 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|227454515|gb|ACP33268.1| S-adenosyl-methyltransferase [Corynebacterium aurimucosum ATCC
           700975]
          Length = 347

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 113/344 (32%), Positives = 177/344 (51%), Gaps = 28/344 (8%)

Query: 12  AIHHTIGD---HVPVLLEKVIALLNPA-----PGKVILDATFGAGGYSRSFCKMGS--NV 61
            I++ + +   HVPV+  ++  LL PA        VI+D T GAGG+S  F        +
Sbjct: 6   TINYDVSENHGHVPVMRARMAQLLAPAIEAAGENAVIVDGTLGAGGHSEYFLTTFPSVRI 65

Query: 62  IALDRDPFAVSCGQETMRDYKEQFSLFQATF-----------SQLQDYVPDKGVDGVVFD 110
           I +DRD  ++S     +  + ++F    A F           S++     + G+ G +FD
Sbjct: 66  IGVDRDSASLSSASRRLSPFADRFVGVNARFDEVGSAIAEGESEVFSIAREHGIAGALFD 125

Query: 111 LGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQA 169
           LGVSSMQ+D  DRGF+++   PLDMRM    G++A+D++N  +  DL RIL   G+E+ A
Sbjct: 126 LGVSSMQLDQVDRGFAYKTDAPLDMRMDPRQGMTAADILNTYSHGDLARILKTYGDERFA 185

Query: 170 SRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEEL 228
            +IA A+++ R+  PF  +  L  L+  T+  + +    HPA R+FQALR+ VN E+E +
Sbjct: 186 GKIASAVLREREKEPFGNSARLVDLLYATIPAATRRTGGHPAKRTFQALRVEVNRELEAI 245

Query: 229 AQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI 288
            Q +     AL  GG  + +S+ SLEDR+VK  F   S         +      A +  +
Sbjct: 246 EQVIPVITDALSIGGRAVFMSYQSLEDRIVKHAFTKLSTSTTPAGLPMDLPGTAAHYSVV 305

Query: 289 TKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDDSFVHLPR 332
           T+     +QE++A N R+ S ++RA  R     +E     H P 
Sbjct: 306 TRGAEKASQEEIAENPRAASVRVRALER-----LEGTPSFHEPG 344


>gi|291534831|emb|CBL07943.1| S-adenosyl-methyltransferase MraW [Roseburia intestinalis M50/1]
          Length = 350

 Score =  300 bits (770), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 95/326 (29%), Positives = 162/326 (49%), Gaps = 28/326 (8%)

Query: 5   SCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNV 61
           + + +    +   G H+ +++++++  L   PG+   DAT G GG++++         ++
Sbjct: 38  TIEHVIKKGNTPAGMHISIMVQEILDTLKIQPGETGFDATLGYGGHTKAMLACLNGQGHI 97

Query: 62  IALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQ 117
            A D DP   +  ++ + +     +  ++    F  + +   + G  D ++ DLGVSSMQ
Sbjct: 98  YATDVDPEESAKTKKRLEELGYGEDILTIRLQNFCTIDEIAKEVGGFDFILADLGVSSMQ 157

Query: 118 IDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
           ID   RGFSF+  GPLD+R++   GISA++ ++    ++L  +L    +E     +A AI
Sbjct: 158 IDNPKRGFSFKVDGPLDLRLNQEAGISAAERLDTITREELAGMLYENSDEPYCEELAKAI 217

Query: 177 VKR-RQSAPFQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQ 230
               R+     TT  L  +I+KT+ F      K+       R+FQALRI VN E E L +
Sbjct: 218 TDEIRKGNRIDTTTKLREVIEKTLDFLPEKEKKDTIKKTCQRTFQALRIDVNREFEVLYE 277

Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK 290
            +     ALK GG + +++FHS ED+LVKK                       ++   +K
Sbjct: 278 FMEKLPDALKPGGRVAILTFHSGEDKLVKKALKE--------------GYRAGIYADYSK 323

Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMR 316
            VV P+ ++ A N R+RS K+R  +R
Sbjct: 324 DVVRPSAQECAQNGRARSTKMRWAVR 349


>gi|26553777|ref|NP_757711.1| methyltransferase [Mycoplasma penetrans HF-2]
 gi|30173058|sp|Q8EW81|RSMH_MYCPE RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|26453784|dbj|BAC44115.1| methyltransferase [Mycoplasma penetrans HF-2]
          Length = 312

 Score =  300 bits (770), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 92/310 (29%), Positives = 146/310 (47%), Gaps = 12/310 (3%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCG 74
             H+ V LE  +  LN    K+ +D TFG GG+S    K       +   D D  A    
Sbjct: 7   NKHISVRLEDAVDSLNIQKDKIYVDCTFGRGGHSFEILKRLSSKGKLFVFDLDLDAKKYF 66

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                 +K  F   Q  F  L++ +       VDG +FD GVSS  +D  +RGFSF+   
Sbjct: 67  DNNFSKFKNCF-FIQDNFKNLKENLAKFDISKVDGFLFDFGVSSPMLDNANRGFSFKLDA 125

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM+ +  +SA +V+N  + + L +I    GE +    +   I+K R + P +TT +
Sbjct: 126 RLDMRMNQNQELSAYEVINNYSKEKLIQIFWKYGEIRNPVPVVDEIIKYRSNKPIETTLE 185

Query: 191 LSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           L  +I+K      +  + H A   FQA+RI VN+E+  + + L  A   L   G ++ +S
Sbjct: 186 LVDIIRKRTPIKIQREKKHFARTYFQAIRIEVNDELNSIRKALSDALNMLSKNGRIVTIS 245

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLE++ +K  +       +     I ++     F+ I  K    +  ++  N R+RS+
Sbjct: 246 FHSLEEKEIKNTYKDVLESKIPKEVPINNSFD---FKIIKIKPKRASSSELEENNRTRSS 302

Query: 310 KLRAGMRTVE 319
            L+   R  E
Sbjct: 303 FLKVIERVNE 312


>gi|307108403|gb|EFN56643.1| hypothetical protein CHLNCDRAFT_144447 [Chlorella variabilis]
          Length = 468

 Score =  300 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 112/384 (29%), Positives = 162/384 (42%), Gaps = 87/384 (22%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCGQE 76
           H+ VLL +V+A       +  +D T GA G++ +  +    +   +  D DP A      
Sbjct: 84  HISVLLSEVLAAFEGRAVRRYVDGTLGAAGHATAMLRQHPELESLVGFDLDPTAHQLASA 143

Query: 77  TMR---------------------------------DYKEQFSLFQATFSQLQDYVPDKG 103
            +                                  + +    L ++ F ++Q  +    
Sbjct: 144 RLAAAGAAVVPVAVSPAGRASFELPTGPGGGDGTDGEARPTAFLVRSNFGRIQAVLRQLP 203

Query: 104 -----------------------------VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
                                        VD ++ DLG+SSMQ+D  DRGFSF + GPLD
Sbjct: 204 LGPGGGGGSTDSNNSSSNGNTSSSSGSGGVDAILLDLGISSMQVDTADRGFSFLRDGPLD 263

Query: 135 MRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM  +  +SA   VN     +L R++   GEE+    IA  IV  R+ AP  TTQ L  
Sbjct: 264 MRMDPAAPLSAELAVNTWPEGELGRVIREYGEERHWRGIARRIVAAREEAPITTTQQLVR 323

Query: 194 LIQKTVYFSKN---------------NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
            I                           HPATR+FQALRI VN E++ +AQ L  A + 
Sbjct: 324 AIGSPGGGGGGGGGRGRGRRSGGGDARFKHPATRTFQALRIAVNGELQSIAQALPDAIEC 383

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH------MIPSNAHPAVFQSITKKV 292
           L  GG L V++FHSLEDR+VK  F + +G   +              A  A  + +T++ 
Sbjct: 384 LAPGGRLAVITFHSLEDRIVKWAFRAAAGMAPSDEQLPSYCLPFEEAAAQASVRILTRRP 443

Query: 293 VVPTQEDVAFNRRSRSAKLRAGMR 316
           V P++E+ A N RSRSAKLR   +
Sbjct: 444 VAPSEEEQAANVRSRSAKLRVVEK 467


>gi|156083547|ref|XP_001609257.1| S-adenosyl methyltransferase [Babesia bovis T2Bo]
 gi|154796508|gb|EDO05689.1| S-adenosyl methyltransferase, putative [Babesia bovis]
          Length = 420

 Score =  300 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 109/332 (32%), Positives = 162/332 (48%), Gaps = 39/332 (11%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQE 76
           H PVLL++ + +L   P    LD T G GG++ +  K+ S    ++ALDRDP +V    +
Sbjct: 98  HEPVLLKEALDMLVIDPDGRYLDLTLGYGGHTEAILKLLSPKGVLVALDRDPESVYYTSK 157

Query: 77  TMRDY--KEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQK 129
            +  Y   +Q      TFS L   +    +      G++ DLG+S+ Q++   RGF++  
Sbjct: 158 RLEQYVRSKQLVPVIGTFSNLNSVLESNNLPLKDYTGIIADLGISTHQLEDPKRGFAYNT 217

Query: 130 SGPLDMRMSC------------------SGISASDVVNQANVKDLTRILGILGEEKQASR 171
            GPLDMRMS                   +G  A  ++N+   +D+  +L   GEE +A  
Sbjct: 218 DGPLDMRMSNPLYDPFNPRDDIVKPNLDTGNIAFKLINKGREQDIAYVLREYGEEPRAII 277

Query: 172 IAHAIVKRRQS-APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQ 230
           IA  IV++RQ      TT  L  ++   V  +    +   +R FQALRI+VNNE++ELA 
Sbjct: 278 IARRIVEKRQRLGEIATTFQLRDIVLSCVRGNHKAGMKTLSRVFQALRIYVNNELDELAH 337

Query: 231 GLRSAEKALKAG-GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT 289
            L  A   L    G  +V+S+HSLEDR VK  F                      ++ IT
Sbjct: 338 LLDHAPSILNPKQGRFVVISYHSLEDRAVKHAFTGLQKLKTMSND---------SYKVIT 388

Query: 290 KKVVVPTQEDVAFNRRSRSAKLRAGMRTVERS 321
           KK V PT E+   N+++RSAKLR   R++   
Sbjct: 389 KKCVTPTLEECTSNQKARSAKLRCLERSMAAP 420


>gi|291519694|emb|CBK74915.1| S-adenosyl-methyltransferase MraW [Butyrivibrio fibrisolvens 16/4]
          Length = 347

 Score =  300 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 95/326 (29%), Positives = 152/326 (46%), Gaps = 28/326 (8%)

Query: 5   SCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNV 61
           + + + S      G H+ +++++++  L   PG+  LD T G GG++R   +       +
Sbjct: 35  TIERVISKGSTPAGMHISIMVQEILDFLQIQPGQKGLDCTLGYGGHTRKMLEQLQGQGCI 94

Query: 62  IALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQ 117
             LD DP       E +R +    + F      F+ +     + G  D V+ DLGVSSMQ
Sbjct: 95  YGLDVDPIESKKTVERLRGFGFGEDNFQFRLINFANIDKVAEEAGKFDFVLADLGVSSMQ 154

Query: 118 IDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
           ID  +RGFS++  GPLD+R+    G SA++ ++    ++   ++    +E  A  IAH +
Sbjct: 155 IDNPERGFSYKIDGPLDLRLDPEHGESAAERLHNITEEEFIGMMVENSDEPYAEEIAHKV 214

Query: 177 VKRRQSA-PFQTTQDLSSLIQKTVYFSKNNRI-----HPATRSFQALRIFVNNEIEELAQ 230
                   P  TT  L   I + ++                R FQALRI VN+E E L  
Sbjct: 215 FTLMAKGNPMDTTTALREAISEALWKVPKEEKEQAIKKSCARVFQALRIDVNSEFEVLYT 274

Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK 290
            L      LK GG + +++FHS EDRLVKK F   + +               V+  ++ 
Sbjct: 275 FLEKLPGILKPGGRVAILTFHSGEDRLVKKSFKELAKEG--------------VYSEVSS 320

Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMR 316
            VV P+ E+   N RS+S K+R  ++
Sbjct: 321 DVVRPSAEECRINPRSKSTKMRWAVK 346


>gi|240145398|ref|ZP_04743999.1| S-adenosyl-methyltransferase MraW [Roseburia intestinalis L1-82]
 gi|257202523|gb|EEV00808.1| S-adenosyl-methyltransferase MraW [Roseburia intestinalis L1-82]
          Length = 350

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 95/326 (29%), Positives = 163/326 (50%), Gaps = 28/326 (8%)

Query: 5   SCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNV 61
           + + +    +   G H+ +++++++  L   PG+   DAT G GG++++         ++
Sbjct: 38  TIEHVIKKGNTPAGMHISIMVQEILDTLKIQPGETGFDATLGYGGHTKAMLACLNGQGHI 97

Query: 62  IALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQ 117
            A D DP   +  ++ + +     +  ++    F  + +   + G  D ++ DLGVSSMQ
Sbjct: 98  YATDVDPEESAKTKKRLEELGYGEDILTIRLQNFCTIDEIAKEAGGFDFILADLGVSSMQ 157

Query: 118 IDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
           ID   RGFSF+  GPLD+R++   GISA++ ++    ++L  +L    +E     +A AI
Sbjct: 158 IDNPKRGFSFKVDGPLDLRLNQEAGISAAERLDTITREELAGMLYENSDEPYCEELAKAI 217

Query: 177 VKR-RQSAPFQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQ 230
               R+ +   TT  L  +I+KT+ F      K+       R+FQALRI VN E E L +
Sbjct: 218 TDEIRKGSRIDTTTKLREVIEKTLDFLPEKEKKDTIKKTCQRTFQALRIDVNREFEVLYE 277

Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK 290
            +     ALK GG + +++FHS ED+LVKK                       ++   +K
Sbjct: 278 FMEKLPDALKPGGRVAILTFHSGEDKLVKKALKE--------------GCRAGIYADYSK 323

Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMR 316
            VV P+ ++ A N R+RS K+R  +R
Sbjct: 324 DVVRPSAQECAQNGRARSTKMRWAVR 349


>gi|168700539|ref|ZP_02732816.1| S-adenosyl-methyltransferase MraW [Gemmata obscuriglobus UQM 2246]
          Length = 341

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 113/326 (34%), Positives = 163/326 (50%), Gaps = 31/326 (9%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCG 74
           G H+PVLL +V+A L+P PG+ ++D T G  G+S    +       +IA D D   +   
Sbjct: 29  GAHIPVLLAEVLAALDPRPGQTVVDCTLGFAGHSLELLRRVAPDGLLIATDLDVGNIEPA 88

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +  + +    F L    F+ L   +  +GV   D V+ DLG+SSMQ+D  DRGFSF + G
Sbjct: 89  RPKLEEAGGLFGLHHTNFAGLPTVLAIEGVTAVDAVLADLGMSSMQVDDRDRGFSFMRDG 148

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + G +A+ ++   +  +L      LG+E QA  IA A+V+ RQ+AP + T+ 
Sbjct: 149 PLDMRMDRTRGRTAAQLLATLSRDELAACFSELGDEPQAGAIADAVVRERQTAPVERTKQ 208

Query: 191 LSSLIQKTVYFS----------KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           L +LI+                +   + P TR FQALRI  N E+  L Q LR     LK
Sbjct: 209 LRALIEAAAPVRIDRAPGAPPERKQLLAPVTRVFQALRILTNRELASLQQLLRVLPTVLK 268

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300
            GG+  ++SFHS EDRLVK  F                     V+ S++   +  T E+ 
Sbjct: 269 PGGVAAIISFHSGEDRLVKAAFRD--------------GLRAGVYSSVSPDAIRSTFEER 314

Query: 301 AFNRRSRSAKLRAGMRTVERSIEDDS 326
             N R+RSAKLR   R       + +
Sbjct: 315 RANPRARSAKLRVARRAEAPPDAEPA 340


>gi|224534257|ref|ZP_03674835.1| S-adenosyl-methyltransferase MraW [Borrelia spielmanii A14S]
 gi|224514359|gb|EEF84675.1| S-adenosyl-methyltransferase MraW [Borrelia spielmanii A14S]
          Length = 295

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 99/305 (32%), Positives = 170/305 (55%), Gaps = 23/305 (7%)

Query: 20  HVPVLLEKV---IALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           H PVLL+ +   I  L      + +D+T G G ++++  +     +++ ++RD   +   
Sbjct: 7   HFPVLLDAICKLIEDLPLKSNLIYIDSTLGEGVHAKAILEKYGFLSLVGIERDSQILERA 66

Query: 75  QETMRDYKEQFSLFQATFSQL-QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           ++ +R ++ + + F   F     +Y  +   + ++ DLG+S        +GFSF +  PL
Sbjct: 67  KQFLRIFEGRITYFNDWFDNFFANYPLNVKANFILVDLGISMFHYKGSKKGFSFFEDEPL 126

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMR+  S  ISA+++VN  +  DL  ++  L  E  + RI+ AIV+ R+    QTT++L 
Sbjct: 127 DMRLCSSCSISAAEIVNTFSRYDLESLIYNLSNEHYSRRISKAIVEYRKIKKIQTTKELQ 186

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           S+I K   FSK  +I+PAT++FQALRI+VN+E+  L + L    + L   G+L +++FHS
Sbjct: 187 SIISKVYPFSKF-KINPATKTFQALRIYVNDELARLKRSLPLWVENLAKDGILAIITFHS 245

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           +EDR+VK FF S S                 ++  I+KK ++P+ +++  N+ SRSAKLR
Sbjct: 246 IEDRIVKDFFKSLSCD---------------LYAKISKKPIIPSFDEIKKNKPSRSAKLR 290

Query: 313 AGMRT 317
           A  + 
Sbjct: 291 ALKKI 295


>gi|239624706|ref|ZP_04667737.1| S-adenosyl-methyltransferase MraW [Clostridiales bacterium
           1_7_47_FAA]
 gi|239521092|gb|EEQ60958.1| S-adenosyl-methyltransferase MraW [Clostridiales bacterium
           1_7_47FAA]
          Length = 362

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 107/331 (32%), Positives = 169/331 (51%), Gaps = 31/331 (9%)

Query: 3   SKSCKTMSSAIHH---TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG- 58
            K  +T++  I      +G H+ +++++++  L   PG+  LDAT G GG+++   K   
Sbjct: 45  EKYPETVAKVISKGSTPVGMHISIMVKEILDFLEIQPGQTGLDATLGYGGHTQEMLKCLQ 104

Query: 59  --SNVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLG 112
              ++ ALD D   ++  +E +       E  ++ Q  F+ +     + G  D V+ DLG
Sbjct: 105 GQGHLHALDVDTIEMAKTRERLGKLGYGLEILTIRQLNFADIDQLAAETGPFDFVLADLG 164

Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASR 171
           VSSMQID  +RGFSF+K GPLD+R+  S GI AS+ +   + ++LT +L    +E  A  
Sbjct: 165 VSSMQIDNPERGFSFKKDGPLDLRLDSSRGIPASERLRHISREELTGMLIENSDEPYAEE 224

Query: 172 IAHAIVKR-RQSAPFQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEI 225
           I+ A+V R ++     TT  L   I++T+ F      K        R+FQALRI +N+E 
Sbjct: 225 ISRAVVNRIKRGDGIDTTTQLRETIEQTLSFIPESDRKEAVKKSCQRTFQALRIDINSEF 284

Query: 226 EELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF 285
           E L Q L      L  GG + V++FHS EDR+VKK F                     V+
Sbjct: 285 EVLYQFLEKLPDVLAKGGRVAVLTFHSGEDRIVKKSFKDL--------------YRQGVY 330

Query: 286 QSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
             I   V+ P+ E+ + N R+RS K+R  ++
Sbjct: 331 SEIAGDVIRPSAEECSMNSRARSTKMRWAIK 361


>gi|193216628|ref|YP_001999870.1| S-adenosyl-methyltransferase [Mycoplasma arthritidis 158L3-1]
 gi|263456519|sp|B3PMB4|RSMH_MYCA5 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|193001951|gb|ACF07166.1| S-adenosyl-methyltransferase [Mycoplasma arthritidis 158L3-1]
          Length = 286

 Score =  300 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 97/291 (33%), Positives = 154/291 (52%), Gaps = 14/291 (4%)

Query: 32  LNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMRDYKEQFSLFQ 89
           +        +D T G  G+S    K      +I  D+D  A+    + ++     F+L Q
Sbjct: 1   MEIKSDGTYVDLTLGRAGHSLEILKKLINGRLICFDKDNEAIKESYKKLQKISPNFTLIQ 60

Query: 90  ATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISAS 145
             F  L+  +   G   VDG++ DLGVSS QID   RGFS+ + GPLDMRM+  +  SA 
Sbjct: 61  NDFRFLKAELEKLGINEVDGILADLGVSSPQIDDPTRGFSYSQEGPLDMRMNQQNSFSAK 120

Query: 146 DVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNN 205
           D+++  +  +LT+IL    + K A+ +A AIV +R   P ++T +L  +I+  +      
Sbjct: 121 DIIDNFDESELTKILIKNADVKLANLVAKAIVAKR---PIKSTSELVEIIKNALPAKIVR 177

Query: 206 RIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASR 265
             +PA   FQALRI VN+E+  L   L  A + LK  G +++++FHS ED +VK FF  +
Sbjct: 178 EKNPAKAVFQALRIEVNDELGALTAMLADATQLLKKDGKILIITFHSKEDSIVKNFFQKQ 237

Query: 266 SGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
              V    + +P N    +++    K++ P++++   N RSRSAKLR   +
Sbjct: 238 -NYVDPRLNKLPINIQK-IWKQ---KIIFPSEDEKLQNNRSRSAKLRVVKK 283


>gi|116073986|ref|ZP_01471248.1| methyltransferase [Synechococcus sp. RS9916]
 gi|116069291|gb|EAU75043.1| methyltransferase [Synechococcus sp. RS9916]
          Length = 305

 Score =  300 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 111/308 (36%), Positives = 159/308 (51%), Gaps = 31/308 (10%)

Query: 20  HVPVLLEKVIALLNPAPG-----KVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVS 72
           HVPVL E ++  L  +P       + +DAT G  G+S           +I LD+DP A S
Sbjct: 14  HVPVLAEPLLEALAASPESPWEKGLFIDATLGGAGHSALLLDRYPQLRLIGLDQDPTARS 73

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             Q  +  Y ++  +    F+   DY P+   D V+ DLGVSS Q+D   RGFSF+  GP
Sbjct: 74  AAQVRLEPYGDRAEIVATNFA---DYQPEAPADLVLADLGVSSPQLDVAARGFSFRLDGP 130

Query: 133 LDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTTQ 189
           LDMRM+  G   +A++++ +   + L  ++   GEE+ + RIA  I    +++  +  T 
Sbjct: 131 LDMRMNPQGGGETAAELIERLEEEPLADLIYAYGEERLSRRIARRIKADLKENGGYAGTA 190

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           DL+  +        +  RIHPATR+FQALRI VN+E+  L + L+ A   L  GG+L ++
Sbjct: 191 DLAYAVAGCYPPKARRGRIHPATRTFQALRIAVNDELGVLDRLLQQAPDWLNPGGVLAII 250

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDR VK  F                         IT+K +V  + + A N RSRS
Sbjct: 251 SFHSLEDRRVKTAFLQDD-----------------RLARITRKPLVAAEAEEAANPRSRS 293

Query: 309 AKLRAGMR 316
           AKLR   R
Sbjct: 294 AKLRLARR 301


>gi|157164915|ref|YP_001466663.1| S-adenosyl-methyltransferase MraW [Campylobacter concisus 13826]
 gi|112800495|gb|EAT97839.1| S-adenosyl-methyltransferase MraW [Campylobacter concisus 13826]
          Length = 334

 Score =  299 bits (767), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 101/304 (33%), Positives = 161/304 (52%), Gaps = 12/304 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76
            H+ VLL++V++          +D T G  G+S +      N+  IA D+D  A++   +
Sbjct: 31  PHISVLLDEVLSFFKDLR-GNFIDCTLGYAGHSSAILSQNENLNLIACDKDIEAINFSLK 89

Query: 77  TMRDYKEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  +  +  ++++ FS+L   +       V G++ D+GVSS+QID  DRGF    S  L
Sbjct: 90  KLEPFGSRVKIYKSNFSELISKLSSDEISNVRGILADIGVSSLQIDKDDRGFGLGSSA-L 148

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM    G SA DVVN  +  +L RI    GE K AS IA+ I+  R      + ++L+
Sbjct: 149 DMRMDKERGFSAYDVVNGYSFDELVRIFRDYGELKNASGIANKIINARNLGEITSAKELA 208

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           ++I   +   K   + PA  +FQA+RI VN E++EL   L S EK      L+ +++FHS
Sbjct: 209 NII--GIAQIKGRGVSPAILAFQAIRIEVNGELDELTNLLDSIEKGGFKDCLVTIITFHS 266

Query: 253 LEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           LEDR+VK+ F   +   +    +       +  + + +TKK +  +Q ++A N RS+SAK
Sbjct: 267 LEDRIVKERFKKWANSCICPPGIYRCECGNNHELGEILTKKPLTASQSELAQNSRSKSAK 326

Query: 311 LRAG 314
           LR  
Sbjct: 327 LRVF 330


>gi|226226826|ref|YP_002760932.1| putative S-adenosyl-methyltransferase [Gemmatimonas aurantiaca
           T-27]
 gi|263447553|sp|C1A8A2|RSMH_GEMAT RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|226090017|dbj|BAH38462.1| putative S-adenosyl-methyltransferase [Gemmatimonas aurantiaca
           T-27]
          Length = 315

 Score =  299 bits (767), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 110/310 (35%), Positives = 172/310 (55%), Gaps = 10/310 (3%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPF 69
           S+    T   HVPVLL ++  +L  A    +LD T G GG++ +F + G  V  +DRDP 
Sbjct: 6   SAPSGRTGTYHVPVLLSEIETMLANAT--TVLDCTLGGGGHTAAFLERGVRVTGVDRDPR 63

Query: 70  AVSCGQETMRDYK--EQFSLFQATFSQLQD--YVPDKGVDGVVFDLGVSSMQIDCGDRGF 125
           A++  +E + +Y+   QF    A ++ L++  +  D   DG++ DLGVSS Q D   RGF
Sbjct: 64  ALAAARERLGEYERSGQFRAVLANYAALEEAGFSTDDRFDGILLDLGVSSHQFDDASRGF 123

Query: 126 SFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP 184
           +F++  PLDMRM     + A +++N  +  DL+ +L    +E +A+R+A  IV+RR+  P
Sbjct: 124 TFREGAPLDMRMGTDADLDAGELLNTIDEVDLSALLRAYADEPRAARMAREIVRRRERRP 183

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           F T  DL   I+  +     +      R FQA+RI VN+E+  L + L +    L  GG+
Sbjct: 184 FATADDLVDAIRAVL--GPRSGAPDFARIFQAVRIAVNDELSGLERALPALRDRLTPGGV 241

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
           L ++S+HS EDRLVK  F   S       R  + +     +  +IT+K V  T++++  N
Sbjct: 242 LAIISYHSGEDRLVKNAFRDWSASCVCPPRQFVCTCRGRPLGDTITRKPVSATEQEIDQN 301

Query: 304 RRSRSAKLRA 313
            R+RSA+LRA
Sbjct: 302 TRARSARLRA 311


>gi|323452900|gb|EGB08773.1| mraW bacterial methyltransferase-like protein [Aureococcus
           anophagefferens]
          Length = 357

 Score =  299 bits (767), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 103/322 (31%), Positives = 156/322 (48%), Gaps = 21/322 (6%)

Query: 11  SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRD 67
            A+      H PV+  + +  L        +D T G GG+S         G  ++ +DRD
Sbjct: 37  EALPAASAYHTPVMGNECVDWLVTKRDGFYVDGTLGGGGHSSLILAKLGDGGRLVGVDRD 96

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFS---QLQDYVPDKGVDGVVFDLGVSSMQIDCGDRG 124
             A+    + +     +FS   A +    +       +  DGV+ DLGVSS Q+D   RG
Sbjct: 97  AAAIEAAGDRLAA-DGRFSSVHANYDAGVRRAVEAAGRKADGVLLDLGVSSRQLDDAARG 155

Query: 125 FSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           FSF+  GP+DMRM    G +ASD+VN  + +DL  +L    +E  A R+A A+V  R   
Sbjct: 156 FSFRGDGPIDMRMDGRDGTTASDLVNGLDERDLAFLLRANADEPNAGRVARALVAAR--- 212

Query: 184 PFQTTQDLSSLIQKTVYFSKNN--------RIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           P  +T  L+  +   V   K +        +     R+FQALR+ VN+E   L + L   
Sbjct: 213 PLGSTTALADAVAAAVPRQKRSAPAAHAQAQKKAVARAFQALRVEVNDEFGALERLLLDL 272

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295
              +  GG ++V+++HSLEDR VK+ F     +  A R    +   P  F  + +K + P
Sbjct: 273 PALVAEGGRVVVLTYHSLEDRRVKRIFRDGRLRGDAPRDDYGNKLAP--FAPLHRKALPP 330

Query: 296 TQEDVAFNRRSRSAKLRAGMRT 317
           ++ +V  N R+RSAKLRA  RT
Sbjct: 331 SEGEVERNPRARSAKLRAAERT 352


>gi|86160181|ref|YP_466966.1| S-adenosyl-methyltransferase MraW [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|123496850|sp|Q2IG17|RSMH_ANADE RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|85776692|gb|ABC83529.1| methyltransferase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 310

 Score =  299 bits (767), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 116/302 (38%), Positives = 172/302 (56%), Gaps = 5/302 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H PVL  +V+ LL P PG++ LD T G GG+S    + G+ VIALD+DP A++     + 
Sbjct: 7   HEPVLANEVLELLRPRPGELFLDGTLGGGGHSGLLLEAGARVIALDKDPRALAAATARLA 66

Query: 80  DYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
            + E F   ++ F   ++ +   G   VDG + DLGVSS Q+D  +RGFSF + GPLDMR
Sbjct: 67  RFGEAFRAVRSDFRDAKNVLEALGIGAVDGALVDLGVSSPQLDEAERGFSFSRPGPLDMR 126

Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
           M  +G +  D++ + + ++L RIL   GEE  A  +A AI    ++     T  L+ ++ 
Sbjct: 127 MGDTGETLEDLLRRIDERELARILREYGEEPFARPVARAIKAALEAEAPLDTARLAEVVA 186

Query: 197 KTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
             +      +RIHPATR+FQALRI VN+E+  LA  L      L  GG    +SFHSLED
Sbjct: 187 GAIPRKAWPHRIHPATRTFQALRIAVNDELGALAAWLDGLPGVLAPGGRAAAISFHSLED 246

Query: 256 RLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           R+VK+ F + +          + +    A F +IT+K V  + +++A N R+RSA+LRA 
Sbjct: 247 RMVKEKFRALTQACTCPPDLPVCACGAKASFAAITRKAVKASDDEIARNPRARSARLRAV 306

Query: 315 MR 316
            +
Sbjct: 307 EK 308


>gi|197124208|ref|YP_002136159.1| S-adenosyl-methyltransferase MraW [Anaeromyxobacter sp. K]
 gi|263446708|sp|B4UER3|RSMH_ANASK RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|196174057|gb|ACG75030.1| S-adenosyl-methyltransferase MraW [Anaeromyxobacter sp. K]
          Length = 310

 Score =  299 bits (766), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 115/302 (38%), Positives = 172/302 (56%), Gaps = 5/302 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H PVL  +++ LL P PG++ LD T G GG+S    + G+ VIALD+DP A++     + 
Sbjct: 7   HEPVLANEILELLRPRPGELFLDGTLGGGGHSGLLLEAGARVIALDKDPRALAAATARLA 66

Query: 80  DYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
            + E F   ++ F   ++ +   G   VDG + DLGVSS Q+D  +RGFSF + GPLDMR
Sbjct: 67  RFGEAFRAVRSDFRDAKNVLQALGIAAVDGALVDLGVSSPQLDEAERGFSFSRPGPLDMR 126

Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
           M  +G +  D++ + + ++L RIL   GEE  A  +A A+    ++     T  L+ ++ 
Sbjct: 127 MGDTGETLEDLLRRIDERELARILREYGEEPFARPVARAVKAALETEAPLDTARLAEVVA 186

Query: 197 KTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
             +      +RIHPATR+FQALRI VN+E+  LA  L      L  GG    +SFHSLED
Sbjct: 187 GAIPRKAWPHRIHPATRTFQALRIAVNDELGALAAWLDGLPGVLAPGGRAAAISFHSLED 246

Query: 256 RLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           R+VK+ F + +          + +    A F +IT+K V  + E++A N R+RSA+LRA 
Sbjct: 247 RMVKEKFRALTQACTCPPDLPVCACGAKASFAAITRKAVKASDEEIARNPRARSARLRAV 306

Query: 315 MR 316
            +
Sbjct: 307 EK 308


>gi|220918988|ref|YP_002494292.1| S-adenosyl-methyltransferase MraW [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|263446697|sp|B8J8E0|RSMH_ANAD2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|219956842|gb|ACL67226.1| S-adenosyl-methyltransferase MraW [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 310

 Score =  299 bits (766), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 115/302 (38%), Positives = 172/302 (56%), Gaps = 5/302 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H PVL  +++ LL P PG++ LD T G GG+S    + G+ VIALD+DP A++     + 
Sbjct: 7   HEPVLANEILELLRPRPGELFLDGTLGGGGHSGLLLEAGARVIALDKDPRALAAATARLA 66

Query: 80  DYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
            + E F   ++ F   ++ +   G   VDG + DLGVSS Q+D  +RGFSF + GPLDMR
Sbjct: 67  RFGEAFRAVRSDFRDAKNVLEALGIAAVDGALVDLGVSSPQLDEAERGFSFSRPGPLDMR 126

Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
           M  +G +  D++ + + ++L RIL   GEE  A  +A A+    ++     T  L+ ++ 
Sbjct: 127 MGDTGETLEDLLRRIDERELARILREYGEEPFARPVARAVKAALETEAPLDTARLAEVVA 186

Query: 197 KTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
             +      +RIHPATR+FQALRI VN+E+  LA  L      L  GG    +SFHSLED
Sbjct: 187 GAIPRKAWPHRIHPATRTFQALRIAVNDELGALAAWLDGLPGVLAPGGRAAAISFHSLED 246

Query: 256 RLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           R+VK+ F + +          + +    A F +IT+K V  + E++A N R+RSA+LRA 
Sbjct: 247 RMVKEKFRALTQACTCPPDLPVCACGAKASFAAITRKAVKASDEEIARNPRARSARLRAV 306

Query: 315 MR 316
            +
Sbjct: 307 EK 308


>gi|78213939|ref|YP_382718.1| methyltransferase [Synechococcus sp. CC9605]
 gi|123577439|sp|Q3AGW9|RSMH_SYNSC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|78198398|gb|ABB36163.1| methyltransferase [Synechococcus sp. CC9605]
          Length = 294

 Score =  299 bits (765), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 109/308 (35%), Positives = 161/308 (52%), Gaps = 28/308 (9%)

Query: 20  HVPVLLEKVIALLN--PAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQ 75
           HVPVL + V+      P P  +++DAT G GG+S    +      +I LD+D  A +   
Sbjct: 6   HVPVLADAVLDAARRIPRPDGLLIDATLGGGGHSALLLEQHPGLRLIGLDQDATARAAAA 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           E +  + ++ S+    F+   DYVP +    V+ DLGVSS Q+D  +RGFSF+  GPLDM
Sbjct: 66  ERLASFGDRVSIVATNFA---DYVPPEPAVMVLADLGVSSPQLDVAERGFSFRLDGPLDM 122

Query: 136 RMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTTQDLS 192
           RM+    G +A++++++    +L  ++   GEE+ + RIA  I    +    +  T  L+
Sbjct: 123 RMNAGGEGETAAELIDRLEENELADLIYGYGEERLSRRIARRIKADLKDRGSYDGTAALA 182

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             +        +  RIHPATR+FQALRI VN+E+  L + L+ A   L+  GLL ++SFH
Sbjct: 183 YAVAGCYPPKSRRGRIHPATRTFQALRIAVNDELGVLDRLLQQAPDWLEPDGLLGIISFH 242

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR VK  F                       Q IT+K VV T+++   N R+RSAK 
Sbjct: 243 SLEDRRVKTAF-----------------LRDERLQRITRKPVVATEQEEEANPRTRSAKW 285

Query: 312 RAGMRTVE 319
           R   R   
Sbjct: 286 RVAQRLAA 293


>gi|263447881|sp|A7ZD05|RSMH_CAMC1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 307

 Score =  299 bits (765), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 101/304 (33%), Positives = 161/304 (52%), Gaps = 12/304 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76
            H+ VLL++V++          +D T G  G+S +      N+  IA D+D  A++   +
Sbjct: 4   PHISVLLDEVLSFFKDLR-GNFIDCTLGYAGHSSAILSQNENLNLIACDKDIEAINFSLK 62

Query: 77  TMRDYKEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  +  +  ++++ FS+L   +       V G++ D+GVSS+QID  DRGF    S  L
Sbjct: 63  KLEPFGSRVKIYKSNFSELISKLSSDEISNVRGILADIGVSSLQIDKDDRGFGLGSSA-L 121

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM    G SA DVVN  +  +L RI    GE K AS IA+ I+  R      + ++L+
Sbjct: 122 DMRMDKERGFSAYDVVNGYSFDELVRIFRDYGELKNASGIANKIINARNLGEITSAKELA 181

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           ++I   +   K   + PA  +FQA+RI VN E++EL   L S EK      L+ +++FHS
Sbjct: 182 NII--GIAQIKGRGVSPAILAFQAIRIEVNGELDELTNLLDSIEKGGFKDCLVTIITFHS 239

Query: 253 LEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           LEDR+VK+ F   +   +    +       +  + + +TKK +  +Q ++A N RS+SAK
Sbjct: 240 LEDRIVKERFKKWANSCICPPGIYRCECGNNHELGEILTKKPLTASQSELAQNSRSKSAK 299

Query: 311 LRAG 314
           LR  
Sbjct: 300 LRVF 303


>gi|311114349|ref|YP_003985570.1| S-adenosyl-methyltransferase MraW [Gardnerella vaginalis ATCC
           14019]
 gi|310945843|gb|ADP38547.1| S-adenosyl-methyltransferase MraW [Gardnerella vaginalis ATCC
           14019]
          Length = 358

 Score =  298 bits (764), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 110/327 (33%), Positives = 173/327 (52%), Gaps = 20/327 (6%)

Query: 1   MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKM 57
           M+    K +S+        H PVLL+  + L++PA      V++D T G  G++ +F K 
Sbjct: 1   MKGDPMKDLST-------IHAPVLLDDCVNLVSPALNHKNSVVVDCTLGLAGHATAFLKS 53

Query: 58  GS--NVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQDYVPD---KGVDGVVFD 110
                ++ +DRD  A+    + MR+    E+F    A F ++   + D     +D    D
Sbjct: 54  APLATLVGIDRDGEALELAIKRMREEGLDERFIPVHAAFDEVDKVLEDLAIYHIDAAFMD 113

Query: 111 LGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQA 169
           LG+SS+QID  DRGFS+  +  LDMRM  +  I+A+ ++   +   L  I    G+E+ +
Sbjct: 114 LGLSSLQIDEEDRGFSYSHNTALDMRMDTTQSITAATILATYDSHKLANIFREYGQERFS 173

Query: 170 SRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELA 229
             IA  IV+ R+  P  T+  L  L+   +  S     +PA R FQALRI VN E+++LA
Sbjct: 174 GPIARKIVQVREETPITTSGQLVELVDNVIPRSHRAPGNPAKRVFQALRIEVNGELDKLA 233

Query: 230 QGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFAS-RSGKVMAVRHMIPSNAHPAVFQSI 288
           + L      L  GG ++V S+HSLED  VK+F  +     V A   ++P++A P  F+S+
Sbjct: 234 RTLPKLALRLNQGGRIVVESYHSLEDIAVKRFMNNGLEVDVPANMPIVPADAQP-FFRSL 292

Query: 289 TKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           T+  V  ++E++A N RS S +LRA  
Sbjct: 293 TRGAVKASKEEIANNTRSSSVRLRAVE 319


>gi|294791087|ref|ZP_06756245.1| S-adenosyl-methyltransferase MraW [Scardovia inopinata F0304]
 gi|294458984|gb|EFG27337.1| S-adenosyl-methyltransferase MraW [Scardovia inopinata F0304]
          Length = 342

 Score =  298 bits (763), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 106/310 (34%), Positives = 165/310 (53%), Gaps = 16/310 (5%)

Query: 20  HVPVLLEKVIALLNPAPGK-------VILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70
           H PVLL++   L+     +       VI+D T G  G++ +F    S   +I +DRD  A
Sbjct: 9   HTPVLLDECCQLVCGGLDQAAADRTPVIVDCTLGLAGHASAFLARASRARLIGIDRDREA 68

Query: 71  VSCGQETMRD--YKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGF 125
           +    + M++  + ++F    A F      + ++G   VD V  DLG+SS+QID  DRGF
Sbjct: 69  LDLATDRMKNLGFADRFIPLHAAFDDFSSLMENQGLDTVDAVFMDLGLSSLQIDESDRGF 128

Query: 126 SFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA- 183
           S+    PLDMRM     ++A D++ +++ ++LTRI    G+E+ + +IA A+V++R    
Sbjct: 129 SYSHDAPLDMRMDTDQTVTAQDILRESSKEELTRIFRHYGQERYSRQIASALVRQRDKGH 188

Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
           P +TT  L  L+ + V  S  +  +PA R FQALRI VN E+++LA  L      L  GG
Sbjct: 189 PVETTGQLVQLVDRVVPKSHRSGGNPAKRVFQALRIQVNGELDKLAATLPQIALHLSLGG 248

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            L+V S+HSLED++VK F A      +     +  +     F  +T   +   Q++   N
Sbjct: 249 RLVVESYHSLEDKIVKSFMAQGLQANLPPGLPVIPDDAQPFFTDLTHGAIKADQDEAEHN 308

Query: 304 RRSRSAKLRA 313
            RS S +LRA
Sbjct: 309 SRSTSVRLRA 318


>gi|308235562|ref|ZP_07666299.1| S-adenosyl-methyltransferase MraW [Gardnerella vaginalis ATCC
           14018]
          Length = 353

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 107/308 (34%), Positives = 167/308 (54%), Gaps = 13/308 (4%)

Query: 20  HVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           H PVLL+  + L++PA      V++D T G  G++ +F K      ++ +DRD  A+   
Sbjct: 8   HAPVLLDDCVNLVSPALNHKNSVVVDCTLGLAGHATAFLKSAPLATLVGIDRDGEALELA 67

Query: 75  QETMRDYK--EQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
            + MR+    E+F    A F ++   + D     +D    DLG+SS+QID  DRGFS+  
Sbjct: 68  IKRMREEGLDERFIPVHAAFDEVDKVLEDLAIYHIDAAFMDLGLSSLQIDEEDRGFSYSH 127

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           +  LDMRM  +  I+A+ ++   +   L  I    G+E+ +  IA  IV+ R+  P  T+
Sbjct: 128 NTALDMRMDTTQSITAATILATYDSHKLANIFREYGQERFSGPIARKIVQVREETPITTS 187

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             L  L+   +  S     +PA R FQALRI VN E+++LA+ L      L  GG ++V 
Sbjct: 188 GQLVELVDNVIPRSHRAPGNPAKRVFQALRIEVNGELDKLARTLPKLALRLNQGGRIVVE 247

Query: 249 SFHSLEDRLVKKFFAS-RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           S+HSLED  VK+F  +     V A   ++P++A P  F+S+T+  V  ++E++A N RS 
Sbjct: 248 SYHSLEDIAVKRFMNNGLEVDVPANMPIVPADAQP-FFRSLTRGAVKASKEEIANNTRSS 306

Query: 308 SAKLRAGM 315
           S +LRA  
Sbjct: 307 SVRLRAVE 314


>gi|113954684|ref|YP_731835.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. CC9311]
 gi|123327560|sp|Q0I6T7|RSMH_SYNS3 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|113882035|gb|ABI46993.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. CC9311]
          Length = 310

 Score =  297 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 105/308 (34%), Positives = 162/308 (52%), Gaps = 31/308 (10%)

Query: 20  HVPVLLEKVIALLNPAP-----GKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVS 72
           HVPVL E ++ +L+  P        ++DAT G GG+S+   +      ++ LD+DP A +
Sbjct: 14  HVPVLAETLMQVLSEQPPILWQNTAVIDATLGGGGHSKLILERFPGVRLVGLDQDPSARA 73

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                +  + ++  +    F+  +   P + V  V+ DLGVSS Q+D   RGFSF+  GP
Sbjct: 74  AAASRLEPFLDRVQIVPVNFAAFE---PPEPVSLVLADLGVSSPQLDVASRGFSFRLDGP 130

Query: 133 LDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ-SAPFQTTQ 189
           LDMRM+    G +A +++ + +V  L  ++   GEE+ + RIA  I    +    +  T 
Sbjct: 131 LDMRMNPVAGGETAEEMIARLDVNALADLIYAFGEERLSRRIARRIKADLEAEGAYAGTA 190

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            L+  +        +  RIHPATR+FQALRI VN+E+  L + L++A   LK GG+L ++
Sbjct: 191 ALAYAVAGCYPPKARRGRIHPATRTFQALRIAVNDELGVLDRLLQTAPGWLKPGGVLAII 250

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDR VK  F                       + +T+K  + ++++ A N RSRS
Sbjct: 251 SFHSLEDRRVKTAF-----------------LQEERLERVTRKPFMASEQEQADNPRSRS 293

Query: 309 AKLRAGMR 316
           AKLR   R
Sbjct: 294 AKLRIARR 301


>gi|332027021|gb|EGI67117.1| Putative S-adenosyl-L-methionine-dependent methyltransferase
           [Acromyrmex echinatior]
          Length = 325

 Score =  297 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 117/324 (36%), Positives = 175/324 (54%), Gaps = 30/324 (9%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQETMRDY 81
           + ++V+  + P+PGK  +D TFGAGG++    +   N+   ALDRDP    C ++  + Y
Sbjct: 1   MAQEVLTYIAPSPGKTYIDMTFGAGGHATKLLEHSPNIKIFALDRDPLGFECAKQLSQRY 60

Query: 82  KEQFSLFQATFSQLQDYVP-----DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
             Q       FS+L   +      +  +DG++FD G SSMQ D   RGFS  K GPLDMR
Sbjct: 61  PGQVIPLLGKFSELPQLLEPYNIKENSIDGILFDFGCSSMQFDTASRGFSLSKDGPLDMR 120

Query: 137 MS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQTTQDL 191
           M        ++A++V+ +A  +DLTRI+ + G+EK+A +IA AI+  R      +TT++L
Sbjct: 121 MDGFRCPKQLTAANVLERATEEDLTRIIKVYGQEKRAKKIARAIIDSRYMFKKLETTKEL 180

Query: 192 SSLIQKTVYFSKNNRI-----HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           + LI+ T+             H AT++FQALRIFVNNE+ E+  G+  A+  LK  G LI
Sbjct: 181 AQLIESTLDGEIRRDSLGRFSHSATKTFQALRIFVNNELNEINYGILLAQIYLKLSGCLI 240

Query: 247 VVSFHSLEDRLVKKFFA-------------SRSGKVMAVRHMIPSNAHPAVFQSITKKVV 293
            +SFHSLED +VK+  +               +                  ++ + K V+
Sbjct: 241 TISFHSLEDTIVKRHISGNITDNVANTVALKYAHYGKTFDKDEFERLTKIPWKMMHKHVL 300

Query: 294 VPTQEDVAFNRRSRSAKLRAGMRT 317
           +PT E++  N RSRSAKLRA M+ 
Sbjct: 301 IPTAEEIETNPRSRSAKLRAIMKV 324


>gi|318040652|ref|ZP_07972608.1| 16S rRNA m(4)C1402 methyltranserfase [Synechococcus sp. CB0101]
          Length = 309

 Score =  297 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 113/318 (35%), Positives = 160/318 (50%), Gaps = 32/318 (10%)

Query: 11  SAIHHTIGDHVPVLLEKVIALLNPAPG-------KVILDATFGAGGYSRSFCKMGSNV-- 61
                   DHVPVL E V+A      G        V++D T G GG+S    +    +  
Sbjct: 6   DPPDSATFDHVPVLAEPVLAGFAELEGLLDQRGEGVLIDCTLGGGGHSALLLEAHPRLRL 65

Query: 62  IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCG 121
           I LD+DP A +   + +  + ++  +    F+    Y P + V  V+ DLGVSS Q+D  
Sbjct: 66  IGLDQDPTARAAAAQRLAPFGDRVEIVATNFA---TYTPAEPVVAVLADLGVSSPQLDVA 122

Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR- 179
           +RGFSF+  GPLDMRM+   G +A+ ++++ +  +L  ++   GEE+ + RIA  I    
Sbjct: 123 ERGFSFRLDGPLDMRMNPDAGETAAALIDRLDETELADLIYAYGEERLSRRIARRIKHDL 182

Query: 180 RQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
            +   +  T  L+  +        +  RIHPATR+FQALRI VN+E+  L + L SA   
Sbjct: 183 AEQGAYGGTAALAYAVAGCYPPKARRGRIHPATRTFQALRIAVNDELGVLDRLLSSAPDW 242

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           L  GGL  V+SFHSLEDR VK  F S                     Q IT+K V+ T E
Sbjct: 243 LVPGGLFGVISFHSLEDRRVKTAFVSDE-----------------RLQRITRKAVMATTE 285

Query: 299 DVAFNRRSRSAKLRAGMR 316
           +   N RSRSA+LR   R
Sbjct: 286 EEERNPRSRSARLRLAHR 303


>gi|118474367|ref|YP_891757.1| S-adenosyl-methyltransferase MraW [Campylobacter fetus subsp. fetus
           82-40]
 gi|263445750|sp|A0RNH4|RSMH_CAMFF RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|118413593|gb|ABK82013.1| S-adenosyl-methyltransferase MraW [Campylobacter fetus subsp. fetus
           82-40]
          Length = 307

 Score =  297 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 90/301 (29%), Positives = 158/301 (52%), Gaps = 8/301 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76
            H+PVLL+ V+          ILD T G GG+S +      N+  IA DRD  ++S  + 
Sbjct: 4   PHIPVLLKPVLNSFKDIKNGTILDCTLGYGGHSEAILISNPNLKIIACDRDSESLSFCKA 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
               Y ++  ++++ F+ + + +  + + G++ D+GVSS+Q+D  +RGFS   +  LDMR
Sbjct: 64  KFEKYSDRIKIYKSNFAGILNKIDHEDIRGILADIGVSSLQLDLDERGFSINSNN-LDMR 122

Query: 137 MSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLI 195
           M  +   SA +++N  +   L  I     E   A  +A  IV  R  +P ++ ++LSS+I
Sbjct: 123 MDKNQTFSAKELINSYSKDQLADIFYKYAELPNAKSLAQKIVDARDKSPIKSAKELSSII 182

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
            ++    KN  +  A  +FQA+RI VN E++EL   L   + +     +L ++SFHSLED
Sbjct: 183 GRSNL--KNRSVSIAILAFQAIRIEVNKELDELNNLLNLIKSSKINNAILDIISFHSLED 240

Query: 256 RLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           ++ K  F       +    +       + ++ + +TKK + P+++++  N RS  AK+R 
Sbjct: 241 KIAKSTFKEWEKSCICDNFVMKCECGNNHSIGKILTKKPITPSEDEIKQNPRSSCAKMRI 300

Query: 314 G 314
            
Sbjct: 301 F 301


>gi|313906115|ref|ZP_07839465.1| S-adenosyl-methyltransferase MraW [Eubacterium cellulosolvens 6]
 gi|313469055|gb|EFR64407.1| S-adenosyl-methyltransferase MraW [Eubacterium cellulosolvens 6]
          Length = 356

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 102/334 (30%), Positives = 160/334 (47%), Gaps = 34/334 (10%)

Query: 3   SKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---S 59
               + + S  +   G H+P+++++++  L   PG   LD T G GG+S    ++     
Sbjct: 37  GSEIEHIISKGNTPAGMHIPIMVDEILDCLKIEPGMTGLDCTLGYGGHSSRMLELLQGSG 96

Query: 60  NVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSS 115
           ++ +LD DP  +    E MR      E ++     F+ +       G  D V+ DLGVSS
Sbjct: 97  HLYSLDVDPIEIQKTTERMRAKGFSEEIWTPVHTNFANIDRVCEQYGPFDFVLADLGVSS 156

Query: 116 MQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAH 174
           MQID  +RGFS++  GPLD+R + S G SA++ +   + ++L  +L    +E  A  IA 
Sbjct: 157 MQIDNPERGFSYKTDGPLDLRFNPSKGESAAERLRSLDTEELIGLLIDNSDEPYAEEIAA 216

Query: 175 AIVKR-RQSAPFQTTQDLSSLIQKTV----YFSKNNR-------IHPATRSFQALRIFVN 222
           A+    R+  P  TT  L  LI KT+          +            R FQALRI VN
Sbjct: 217 AVASAFRKKEPLDTTTALRELITKTLLEDTPLRNALKTDQTEAVKKSCARVFQALRIDVN 276

Query: 223 NEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHP 282
           +E E L + +      LK GG   +++FHS EDR+VKK F                N   
Sbjct: 277 SEFEVLVEFMDKLPHILKEGGRAAILTFHSGEDRIVKKEFKR--------------NQKD 322

Query: 283 AVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
            ++  +++ V+ P++E+   N R+ S KLR  +R
Sbjct: 323 GLYTEVSRDVIRPSKEECFRNPRAHSTKLRWAIR 356


>gi|291523776|emb|CBK89363.1| S-adenosyl-methyltransferase MraW [Eubacterium rectale DSM 17629]
          Length = 349

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 95/326 (29%), Positives = 167/326 (51%), Gaps = 28/326 (8%)

Query: 5   SCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNV 61
           + + + S  +   G H+ ++++++I  L+  PG+   DAT G GG++R+  +      ++
Sbjct: 36  TIEHVISKGNTPAGMHISIMVKEIIDFLDIKPGQTGFDATLGYGGHTRAMLEKLEGQGHM 95

Query: 62  IALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQ 117
            A D DP      ++ + +     +  ++    F  + +   + G  D ++ DLGVSSMQ
Sbjct: 96  FATDVDPIESEKTKKRLAEAGFGEDILTIKLQNFCTIDEIAKEVGGFDFILADLGVSSMQ 155

Query: 118 IDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
           ID  +RGFSF+  GPLD+R++ + GISA++ ++  + ++L+ +L    +E     +A AI
Sbjct: 156 IDNPERGFSFKVDGPLDLRLNPNAGISAAERLDNISREELSGMLYENSDEPYCEELAKAI 215

Query: 177 VKR-RQSAPFQTTQDLSSLIQKTVYFSKNNRIH-----PATRSFQALRIFVNNEIEELAQ 230
               R+     TT  L  +I++T+ F               R+FQALRI VN+E E L +
Sbjct: 216 TDEIRKGNRIDTTTKLRHIIEQTLDFLPEKDKKDIIKKTCQRTFQALRIDVNHEFEVLYE 275

Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK 290
            +     ALK GG   +++FHS ED+LVKK                 +     ++   +K
Sbjct: 276 FMEKLPGALKPGGRAAILTFHSGEDKLVKKALK--------------AGYKAGIYSDYSK 321

Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMR 316
            V+ P+ ++ A N R+RS K+R  +R
Sbjct: 322 DVIRPSAQECAQNGRARSTKMRWAVR 347


>gi|291528759|emb|CBK94345.1| S-adenosyl-methyltransferase MraW [Eubacterium rectale M104/1]
          Length = 349

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 95/326 (29%), Positives = 167/326 (51%), Gaps = 28/326 (8%)

Query: 5   SCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNV 61
           + + + S  +   G H+ ++++++I  L+  PG+   DAT G GG++R+  +      ++
Sbjct: 36  TIEHVISKGNTPAGMHISIMVKEIIDFLDIKPGQTGFDATLGYGGHTRAMLEKLEGHGHM 95

Query: 62  IALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQ 117
            A D DP      ++ + +     +  ++    F  + +   + G  D ++ DLGVSSMQ
Sbjct: 96  FATDVDPIESEKTKKRLAEAGFGEDILTIKLQNFCTIDEIAKEVGGFDFILADLGVSSMQ 155

Query: 118 IDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
           ID  +RGFSF+  GPLD+R++ + GISA++ ++  + ++L+ +L    +E     +A AI
Sbjct: 156 IDNPERGFSFKVDGPLDLRLNPNAGISAAERLDNISREELSGMLYENSDEPYCEELAKAI 215

Query: 177 VKR-RQSAPFQTTQDLSSLIQKTVYFSKNNRIH-----PATRSFQALRIFVNNEIEELAQ 230
               R+     TT  L  +I++T+ F               R+FQALRI VN+E E L +
Sbjct: 216 TDEIRKGNRIDTTTKLRHIIEQTLDFLPEKDKKDIIKKTCQRTFQALRIDVNHEFEVLYE 275

Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK 290
            +     ALK GG   +++FHS ED+LVKK                 +     ++   +K
Sbjct: 276 FMEKLPGALKPGGRAAILTFHSGEDKLVKKALK--------------AGYKAGIYSDYSK 321

Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMR 316
            V+ P+ ++ A N R+RS K+R  +R
Sbjct: 322 DVIRPSAQECAQNGRARSTKMRWAVR 347


>gi|295111738|emb|CBL28488.1| S-adenosyl-methyltransferase MraW [Synergistetes bacterium SGP1]
          Length = 303

 Score =  296 bits (759), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 109/311 (35%), Positives = 167/311 (53%), Gaps = 25/311 (8%)

Query: 17  IGDHVPVLLEKVIALLN----PAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFA 70
           +  H PVLL +V++ L+    P     I+D T G GGYS +  +      V  +DRDP A
Sbjct: 1   METHEPVLLPEVLSFLSEASEPRRALRIVDGTLGLGGYSEAILRAFPDGRVWGVDRDPDA 60

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVP-DKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
           +   +  +  +  +F    A F  +   +  +   D  VFDLGVS++Q+    RGFSFQ+
Sbjct: 61  LRLAKGRLSAFAPRFCAVHANFGDIAGVLEGEAPFDAFVFDLGVSNLQLTEAARGFSFQQ 120

Query: 130 SGPLDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA-PFQ 186
            GPLDMRM   G   SA++V++  +  +L RI    G+E+ + RIA+ I++RR      +
Sbjct: 121 DGPLDMRMDPGGGAPSAAEVLSGLSADELARIFWEYGDERYSRRIANGIIQRRARGLRLE 180

Query: 187 TTQDLSSLIQKTVYFS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           TT +L +LI++ +     +    HPA R FQALRIFVN+E+  +   L +       G +
Sbjct: 181 TTGELVTLIREVLPAPVQRKMGTHPARRVFQALRIFVNDELSAIESMLATLPTLAGEGCV 240

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
            +VVS+HSLEDR+VK  F S   +               + +++T+  ++P +E+   N 
Sbjct: 241 AVVVSYHSLEDRIVKHRFRSWEKE-------------KGLGRALTRHPLLPQEEERTRNY 287

Query: 305 RSRSAKLRAGM 315
           RSRSAKLRA  
Sbjct: 288 RSRSAKLRAFR 298


>gi|33864313|ref|NP_895873.1| S-adenosyl-methyltransferase MraW [Prochlorococcus marinus str. MIT
           9313]
 gi|42559451|sp|Q7V4B2|RSMH_PROMM RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|33641093|emb|CAE22222.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
           9313]
          Length = 310

 Score =  296 bits (759), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 110/325 (33%), Positives = 166/325 (51%), Gaps = 30/325 (9%)

Query: 10  SSAIHHTIGDHVPVLLEKV---IALL--NPAPGKVILDATFGAGGYSRSFCKMGS--NVI 62
           SS    +   H+ V+ + V   +A L      G +I+DAT G GG+S    +      +I
Sbjct: 4   SSINSDSGFKHLSVMEDAVSQPVAALPAELLVGGLIIDATLGGGGHSALLLERHPDLRLI 63

Query: 63  ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGD 122
            LD+DP A +   E +  + ++ ++    F        +  V  V+ DLGVSS Q+D   
Sbjct: 64  GLDQDPTARAAAAERLALFGDRVTIVATNFVDFSP--AEPAV-VVMADLGVSSPQLDVAQ 120

Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-R 180
           RGFSF+  GPLDMRM+   G +A++++ +    +L  ++   GEE+ + RIA  I     
Sbjct: 121 RGFSFRLDGPLDMRMNPQVGETAAELIGRLEETELADLIYAYGEERLSRRIARRIKHDLA 180

Query: 181 QSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
           +  P+  T  L+  +        ++ RIHPATR+FQALRI VNNE++ L + L+ A   L
Sbjct: 181 EQGPYAGTAALAYAVAGCYPPKARHGRIHPATRTFQALRIAVNNELDALDRFLQKAPDWL 240

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
             GGLL V+SFHSLEDR VK  F                       + +T+K +V ++ +
Sbjct: 241 VPGGLLAVISFHSLEDRRVKTAF-----------------LRDQRLERLTRKPLVASEME 283

Query: 300 VAFNRRSRSAKLRAGMRTVERSIED 324
           +A N RSRSAK R   R  + +  D
Sbjct: 284 IAANPRSRSAKCRFARRLPQATTAD 308


>gi|124024411|ref|YP_001018718.1| S-adenosyl-methyltransferase MraW [Prochlorococcus marinus str. MIT
           9303]
 gi|262824953|sp|A2CD93|RSMH_PROM3 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|123964697|gb|ABM79453.1| Predicted S-adenosylmethionine-dependent methyltransferase
           [Prochlorococcus marinus str. MIT 9303]
          Length = 310

 Score =  296 bits (759), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 108/325 (33%), Positives = 163/325 (50%), Gaps = 30/325 (9%)

Query: 10  SSAIHHTIGDHVPVLLEKV---IALL--NPAPGKVILDATFGAGGYSRSFCKMGS--NVI 62
           SS    +   H+ V+ + V   +A L      G +++DAT G GG+S    +      +I
Sbjct: 4   SSINSDSGFKHLSVMADAVSQPVAALPAELLDGGLMIDATLGGGGHSALLLERHPDLRLI 63

Query: 63  ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGD 122
            LD+DP A +   E +  + ++  +    F        +  V  V+ DLGVSS Q+D   
Sbjct: 64  GLDQDPTARAAAAERLALFGDRVKIVATNFVDFSP--AEPAV-VVMADLGVSSPQLDVAK 120

Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-R 180
           RGFSF+  GPLDMRM+   G +A++++ +    +L  ++   GEE+ + RIA  I     
Sbjct: 121 RGFSFRLDGPLDMRMNPQVGETAAELIGRLEETELADLIYAYGEERLSRRIARRIKHDLA 180

Query: 181 QSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
           +  P+  T  L+  +        +  RIHPATR+FQALRI VN+E++ L + L+ A   L
Sbjct: 181 EQGPYAGTAALAYAVAGCYPPKARRGRIHPATRTFQALRIAVNDELDALDRFLQKAPDWL 240

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
             GGLL V+SFHSLEDR VK  F                       + +T+K +V ++ +
Sbjct: 241 VPGGLLAVISFHSLEDRRVKTAF-----------------LRDQRLERLTRKPLVASEME 283

Query: 300 VAFNRRSRSAKLRAGMRTVERSIED 324
           +A N RSRSAK R   R  +    D
Sbjct: 284 IAANPRSRSAKCRFARRLPQAMTAD 308


>gi|224542006|ref|ZP_03682545.1| hypothetical protein CATMIT_01179 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525063|gb|EEF94168.1| hypothetical protein CATMIT_01179 [Catenibacterium mitsuokai DSM
           15897]
          Length = 348

 Score =  296 bits (759), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 97/326 (29%), Positives = 161/326 (49%), Gaps = 28/326 (8%)

Query: 5   SCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNV 61
           + + + S      G H+ +++++++  L+  PG++ LD T G GG+S       +   ++
Sbjct: 35  TIEKVISKGSTPAGMHISIMVDEILEFLDIQPGQIGLDCTLGYGGHSSKMMEKLEGQGHL 94

Query: 62  IALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQ 117
             LD D   +    E +R+     + F+     F  +       G  D V+ DLGVSSMQ
Sbjct: 95  YGLDIDTIEIEKTTERLRNKGYGEDIFTPILTNFRNIDQVSEKYGPFDFVLADLGVSSMQ 154

Query: 118 IDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
           ID  +RGFS++K+GPLD+R++  +G  A +++   + ++L  IL    +E  A  +A  I
Sbjct: 155 IDNPERGFSYKKNGPLDLRLNPKAGRPAYEILKDLSREELEHILTENSDEPYADILAKNI 214

Query: 177 VKR-RQSAPFQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQ 230
               R     +TTQ L  +I KT+ F      K+     A R FQALRI VN E E L  
Sbjct: 215 YSFIRSGMEVETTQQLYKIIDKTLSFVTDKNRKDIVNKTAARVFQALRIEVNQEFEVLYD 274

Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK 290
            +      LK GG   +++FHS EDR+VKK F       +              ++ + +
Sbjct: 275 FVEKLPLILKPGGKAAILTFHSGEDRIVKKSFKELKNLGI--------------YEDVCR 320

Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMR 316
            V+ P++E+   N R++S K+R  ++
Sbjct: 321 NVIRPSREECHRNSRAKSTKMRWAIK 346


>gi|225551942|ref|ZP_03772882.1| S-adenosyl-methyltransferase MraW [Borrelia sp. SV1]
 gi|225370940|gb|EEH00370.1| S-adenosyl-methyltransferase MraW [Borrelia sp. SV1]
          Length = 296

 Score =  296 bits (759), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 97/305 (31%), Positives = 168/305 (55%), Gaps = 24/305 (7%)

Query: 20  HVPVLLEKV---IALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           H PVLL+ +   I  L      + +D+T G G ++++  +     +++ ++RDP  +   
Sbjct: 7   HFPVLLDAICKLIEDLPVKSDLIYIDSTLGEGVHAKAILEKYDFLSLVGIERDPQILERA 66

Query: 75  QETMRDYKEQFSLFQATFSQLQ-DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           +  +  ++E+ + F   F     +Y  +   + ++ DLG+S        +GFSF +  PL
Sbjct: 67  KHFLSIFEERITYFNDWFDNFFVNYPLNVKANFILVDLGISMFHYKGSKKGFSFLEDEPL 126

Query: 134 DMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           DMR+  S   ISAS++VN  +  DL  ++  L  E  + RI+ AI++ R+    +TT++L
Sbjct: 127 DMRLCSSSCKISASEIVNTFSKYDLEALIYDLSNEHYSRRISKAIIEYRKIKKIETTKEL 186

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            S+I K   FSK  +I+PAT++FQALRI+VN+E+  L + L    + L   G+L +++FH
Sbjct: 187 QSIISKVYPFSKV-KINPATKTFQALRIYVNDELARLKRSLPFWVENLAKDGILAIITFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           S+EDR+VK FF   S                 ++  I+KK ++P+ +++  N+ SRSAKL
Sbjct: 246 SIEDRIVKDFFGGLSCD---------------LYAKISKKPIMPSFDEIKKNKPSRSAKL 290

Query: 312 RAGMR 316
           R   +
Sbjct: 291 RVIKK 295


>gi|294787094|ref|ZP_06752348.1| S-adenosyl-methyltransferase MraW [Parascardovia denticolens F0305]
 gi|315226746|ref|ZP_07868534.1| S-adenosyl-methyltransferase MraW [Parascardovia denticolens DSM
           10105]
 gi|294485927|gb|EFG33561.1| S-adenosyl-methyltransferase MraW [Parascardovia denticolens F0305]
 gi|315120878|gb|EFT84010.1| S-adenosyl-methyltransferase MraW [Parascardovia denticolens DSM
           10105]
          Length = 348

 Score =  296 bits (758), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 108/306 (35%), Positives = 159/306 (51%), Gaps = 10/306 (3%)

Query: 20  HVPVLLEKVIALL-NPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQE 76
           H PVLL+  + L+ +     +I+D T G  G++ +F +      +I +DRD  A++   E
Sbjct: 8   HTPVLLDDCVRLITDGRQAPLIVDCTLGLAGHASAFLQADPQARLIGIDRDQEALTLATE 67

Query: 77  TMRDYK--EQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            MRD    ++F+   A F      + ++G   VD V  DLG+SS+QID  DRGFS+    
Sbjct: 68  RMRDLGLSDRFTPVHAAFDSFSQVLDEQGIKTVDAVFMDLGLSSLQIDENDRGFSYSHDA 127

Query: 132 PLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF-QTTQ 189
           PLDMRM     ++A DV+     +DL RI    G+E+ A  IA  +VK R+     ++T 
Sbjct: 128 PLDMRMDPGQSLTARDVLLTYGRQDLARIFREYGQERFAGPIASRLVKAREEGETPRSTG 187

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
            L +L+ + +  +     +PA R FQALRI VN E+++L   L  A   L  GG L+V S
Sbjct: 188 QLVALVDQVIPRAHRAPGNPAKRVFQALRIEVNGELDKLRMTLPQAACRLNLGGCLVVES 247

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           +HSLEDR+ K F AS     +     +        F  +T+  V   Q + A N RS S 
Sbjct: 248 YHSLEDRITKTFMASGIHADVPAGLPVIPQEAQPFFADLTRGAVKAGQAEAAHNSRSTSV 307

Query: 310 KLRAGM 315
           +LRA  
Sbjct: 308 RLRAVE 313


>gi|317121700|ref|YP_004101703.1| S-adenosyl-methyltransferase MraW [Thermaerobacter marianensis DSM
           12885]
 gi|315591680|gb|ADU50976.1| S-adenosyl-methyltransferase MraW [Thermaerobacter marianensis DSM
           12885]
          Length = 342

 Score =  296 bits (758), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 119/322 (36%), Positives = 169/322 (52%), Gaps = 36/322 (11%)

Query: 12  AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS------------ 59
           A       HVPVLL +V+A L P PG   +D          +    G             
Sbjct: 38  ATAPDGAPHVPVLLREVVAYLAPRPGGRYVD---------GTVGAGGHAAAVLAAAGGEA 88

Query: 60  NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSM 116
            ++ +DRDP A++     +  +  +  L    F  L+ ++ D G   VDG++ DLGVSSM
Sbjct: 89  ELLGIDRDPAALALAARRLAPFGARVRLVHGNFRGLEQHLEDAGWDAVDGILLDLGVSSM 148

Query: 117 QIDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHA 175
           Q+D   RGFS+Q+ GPLDMRM  S   +A+D+VN A    L R +   GEE+ A RIA  
Sbjct: 149 QLDDPSRGFSYQEEGPLDMRMDPSQPVTAADLVNTAGRDQLARWIAEYGEERWAGRIADF 208

Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYFSKNN-RIHPATRSFQALRIFVNNEIEELAQGLRS 234
           IV  R+  P  TT  L  +I+  +         HPA R+FQALRI VN E++ L + L+ 
Sbjct: 209 IVAARRRRPITTTTQLVEIIKAAIPARARRRGGHPARRTFQALRIAVNGELDGLEEFLQQ 268

Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVV 294
           A + L+ GG ++V++FHSLEDR VK+ F + +            +   A F+ +T++ V 
Sbjct: 269 AARRLRPGGRMVVIAFHSLEDRAVKRAFRALAA----------PDGGAAPFRLLTRRPVT 318

Query: 295 PTQEDVAFNRRSRSAKLRAGMR 316
           P +E+   N RSRSAKLRA  R
Sbjct: 319 PGEEEAQANPRSRSAKLRAIER 340


>gi|116329171|ref|YP_798891.1| S-adenosylmethionine-dependentmethyltransferase [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|122283047|sp|Q04Y87|RSMH_LEPBL RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|116121915|gb|ABJ79958.1| S-adenosylmethionine-dependentmethyltransferase [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
          Length = 316

 Score =  296 bits (758), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 106/288 (36%), Positives = 159/288 (55%), Gaps = 23/288 (7%)

Query: 39  VILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ 96
           + LD T G GG+S  F K   N  VI  DRDP  +S     + D+KE+    Q  FS++ 
Sbjct: 28  LFLDGTAGEGGHSLLFLKGFPNSKVILCDRDPVMLSRALARLVDFKERVVSIQTNFSEID 87

Query: 97  -DYVPDKGVD----GVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQ 150
            + +   G++    G++ DLG+S+  +    RGFSF+++ PLDMR++ + GI+A DV+N 
Sbjct: 88  SNLLSSHGINDSPQGILLDLGISTFHLFHSGRGFSFKEAEPLDMRLTPNIGINAEDVINT 147

Query: 151 ANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHP 209
            +   L  I    GEE+ + +IA  IV+RR+      T +L+ LI K +         HP
Sbjct: 148 YSKDRLMHIFYTYGEERWSKKIAEVIVERRKQNLISYTSELADLISKIIPRKLWPPGRHP 207

Query: 210 ATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKV 269
           ATR FQALRI VN E+  + +GL S    L+  G++ V+SFHSLEDR+VK    + + + 
Sbjct: 208 ATRIFQALRIEVNQELTHIEKGLDSLLNLLRPEGVIQVISFHSLEDRIVKNSLRNYAKQ- 266

Query: 270 MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
                          F+ +TKK ++P++E+   N  SRSAKLR   +T
Sbjct: 267 -------------NGFELLTKKPILPSEEETKENPASRSAKLRVLRKT 301


>gi|254432433|ref|ZP_05046136.1| S-adenosyl-methyltransferase MraW [Cyanobium sp. PCC 7001]
 gi|197626886|gb|EDY39445.1| S-adenosyl-methyltransferase MraW [Cyanobium sp. PCC 7001]
          Length = 317

 Score =  295 bits (757), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 108/322 (33%), Positives = 164/322 (50%), Gaps = 35/322 (10%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNPAP--------GKVILDATFGAGGYSRSFCKMGS-- 59
           ++     +  H PVL + V+A   P          G +++D T G GG+S    +     
Sbjct: 14  ATTDAAPVFAHQPVLADAVLASFAPVETLLAEHSGGGLLIDCTLGGGGHSALLLEAHPGL 73

Query: 60  NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQID 119
            +I LD+DP A +   E +  + ++ ++    F+   D+ P +    V+ DLGVSS Q+D
Sbjct: 74  RLIGLDQDPSARTAAAERLAPFGDRVTIVATNFA---DHRPSEPALAVLADLGVSSPQLD 130

Query: 120 CGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178
              RGFSF+  GPLDMRM+   G +A+ ++++     L  ++   GEE+ + RIA  I +
Sbjct: 131 VAGRGFSFRAEGPLDMRMNPEAGETAAALLDRLEEGALADLIYGYGEERLSRRIARRIKE 190

Query: 179 R---RQSAPFQTTQDLSSLIQKT-VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234
           +      A  +TT +L+ L+       ++  R+HPATR+FQALRI VN+E+  L + L  
Sbjct: 191 QGPWNDPARPRTTAELAWLVGGCYPPAARRGRLHPATRTFQALRIAVNDELGVLGRWLEQ 250

Query: 235 AEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVV 294
               L+ GGLL V+SFHSLEDRLVK  F                       + +T+K +V
Sbjct: 251 VPDWLRPGGLLGVISFHSLEDRLVKTAF-----------------LRDERLERVTRKPLV 293

Query: 295 PTQEDVAFNRRSRSAKLRAGMR 316
              E+   N RSRSAK R   R
Sbjct: 294 AAAEEAEANPRSRSAKFRVARR 315


>gi|258654059|ref|YP_003203215.1| S-adenosyl-methyltransferase MraW [Nakamurella multipartita DSM
           44233]
 gi|258557284|gb|ACV80226.1| S-adenosyl-methyltransferase MraW [Nakamurella multipartita DSM
           44233]
          Length = 348

 Score =  295 bits (757), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 103/304 (33%), Positives = 167/304 (54%), Gaps = 19/304 (6%)

Query: 20  HVPVLLEKVIALLNP---------APGKVILDATFGAGGYSRSFCKMGSNV--IALDRDP 68
           H+PVL+++V  LL P         A   V++DAT G GG++ +  +    +  + +DRDP
Sbjct: 27  HIPVLVDRVDQLLAPAIEAATADGATDVVLVDATLGMGGHTLALLQAHPRLRVVGIDRDP 86

Query: 69  FAVSCGQETM--RDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGD 122
            A+S  ++ +      ++  L  A + ++ + +        V  V+FDLGVSS+Q+D  D
Sbjct: 87  QALSIAEQRITAAGLADRVELVHAVYDRIGEVIAATVASGRVQAVLFDLGVSSVQLDEAD 146

Query: 123 RGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGF++ +  PLDMRM   SGI+A++V+N     ++TRIL   GEE+ A RIA A+V  R 
Sbjct: 147 RGFAYAQDAPLDMRMDPTSGITAAEVINTYPGAEITRILREYGEERFAQRIARAVVTERA 206

Query: 182 SAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
             PF T+  L  L++  +   ++    +PA R+FQALRI VN+E+  L + + SA + L 
Sbjct: 207 KRPFTTSARLVELVRANIPAAARRTGGNPAKRTFQALRIEVNDELGALQRAIPSALQHLS 266

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300
             G ++V+S+ SLEDR+VK+  A  +     +        H   F+ + +    PT E++
Sbjct: 267 VAGRIVVMSYQSLEDRIVKRAIAPLTLSRTPLDLPTELPGHDPEFRWVVRGSQAPTDEEI 326

Query: 301 AFNR 304
             N 
Sbjct: 327 QANP 330


>gi|116330221|ref|YP_799939.1| S-adenosylmethionine-dependentmethyltransferase [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
 gi|122282016|sp|Q04V89|RSMH_LEPBJ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|116123910|gb|ABJ75181.1| S-adenosylmethionine-dependentmethyltransferase [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
          Length = 316

 Score =  295 bits (757), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 106/288 (36%), Positives = 159/288 (55%), Gaps = 23/288 (7%)

Query: 39  VILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ 96
           + LD T G GG+S  F K   N  VI  DRDP  +S     + D+KE+    Q  FS++ 
Sbjct: 28  LFLDGTAGEGGHSLLFLKGFPNSKVILCDRDPVMLSRALARLVDFKERVVSIQTNFSEID 87

Query: 97  -DYVPDKGVD----GVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQ 150
            + +   G++    G++ DLG+S+  +    RGFSF+++ PLDMR++ + GI+A DV+N 
Sbjct: 88  SNLLSSHGINDSPQGILLDLGISTFHLFHSGRGFSFKEAEPLDMRLTPNIGINAEDVINT 147

Query: 151 ANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHP 209
            +   L  I    GEE+ + +IA  IV+RR+      T +L+ LI K +         HP
Sbjct: 148 YSKDRLMHIFYTYGEERWSKKIAEVIVERRKQNLISYTSELADLISKIIPRKLWPPGRHP 207

Query: 210 ATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKV 269
           ATR FQALRI VN E+  + +GL S    L+  G++ V+SFHSLEDR+VK    + + + 
Sbjct: 208 ATRIFQALRIEVNQELTHIEKGLDSLLNLLRPEGVIQVISFHSLEDRIVKNSLRNYAKQ- 266

Query: 270 MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
                          F+ +TKK ++P++E+   N  SRSAKLR   +T
Sbjct: 267 -------------NGFELLTKKPILPSEEETKENPASRSAKLRVLRKT 301


>gi|238922879|ref|YP_002936392.1| methyltransferase [Eubacterium rectale ATCC 33656]
 gi|263433286|sp|C4ZBW8|RSMH1_EUBR3 RecName: Full=Ribosomal RNA small subunit methyltransferase H 1;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase 1;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH 1
 gi|238874551|gb|ACR74258.1| methyltransferase [Eubacterium rectale ATCC 33656]
          Length = 349

 Score =  295 bits (757), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 95/326 (29%), Positives = 167/326 (51%), Gaps = 28/326 (8%)

Query: 5   SCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNV 61
           + + + S  +   G H+ ++++++I  L+  PG+   DAT G GG++R+  +      ++
Sbjct: 36  TIEHVISKGNTPAGMHISIMVKEIIDFLDIKPGQTGFDATLGYGGHTRAMLEKLEGQGHM 95

Query: 62  IALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQ 117
            A D DP      ++ + +     +  ++    F  + +   + G  D ++ DLGVSSMQ
Sbjct: 96  FATDVDPIESEKTKKRLAEAGFGEDILTIKLQNFCTIDEIAKEVGGFDFILADLGVSSMQ 155

Query: 118 IDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
           ID  +RGFSF+  GPLD+R++ + GISA++ ++  + ++L+ +L    +E     +A AI
Sbjct: 156 IDNPERGFSFKVDGPLDLRLNPNAGISAAERLDNISREELSGMLYENSDEPYCEELAKAI 215

Query: 177 VKR-RQSAPFQTTQDLSSLIQKTVYFSKNNRIH-----PATRSFQALRIFVNNEIEELAQ 230
               R+     TT  L  +I++T+ F               R+FQALRI VN+E E L +
Sbjct: 216 TDEIRKGNRIGTTTKLRHIIEQTLDFLPEKDKKDIIKKTCQRTFQALRIDVNHEFEVLYE 275

Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK 290
            +     ALK GG   +++FHS ED+LVKK                 +     ++   +K
Sbjct: 276 FMEKLPGALKPGGRAAILTFHSGEDKLVKKALK--------------AGYKAGIYSDYSK 321

Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMR 316
            V+ P+ ++ A N R+RS K+R  +R
Sbjct: 322 DVIRPSAQECAQNGRARSTKMRWAVR 347


>gi|225568788|ref|ZP_03777813.1| hypothetical protein CLOHYLEM_04867 [Clostridium hylemonae DSM
           15053]
 gi|225162287|gb|EEG74906.1| hypothetical protein CLOHYLEM_04867 [Clostridium hylemonae DSM
           15053]
          Length = 351

 Score =  295 bits (757), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 105/331 (31%), Positives = 165/331 (49%), Gaps = 31/331 (9%)

Query: 3   SKSCKTMSSAIHH---TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG- 58
            K  KT+S  I       G H+ + +++++  L   PG+  LDAT G GG++    +   
Sbjct: 32  EKYAKTVSRVIQKGSTPAGMHISICVKEILEFLQIRPGQRGLDATLGYGGHTSKMLECLK 91

Query: 59  --SNVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLG 112
              ++ ALD DP       + +       +  ++    F+++     + G  D V+ DLG
Sbjct: 92  GQGHIYALDVDPIESVRTAKRLEKLGYGPDILTVKLQNFAKIDQVSREAGLFDFVLADLG 151

Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASR 171
           VSSMQID  DRGF+++  GPLD+RM+   GISA++ +     ++L  +L    +E   + 
Sbjct: 152 VSSMQIDNPDRGFTYKAEGPLDLRMNPQKGISAAERLRDITKEELEGMLRENSDEPYGAE 211

Query: 172 IAHAI-VKRRQSAPFQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEI 225
           IA A+  K R+    +TT  L   I++ + F      K      + R+FQALRI VN+E 
Sbjct: 212 IAEAVTEKIRKGGEIETTTQLYKTIEEALAFLPEKDRKEAVKKSSQRTFQALRIDVNSEF 271

Query: 226 EELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF 285
           E L   L      L  GG + +++FHS EDRLVKK F   +                 V+
Sbjct: 272 EALYSFLEKLPDVLAPGGRVAILTFHSGEDRLVKKSFKQFAKSG--------------VY 317

Query: 286 QSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
             I+K+V+ P+QE+   N R+RS K+R  +R
Sbjct: 318 SEISKEVIRPSQEECRQNGRARSTKMRWAVR 348


>gi|260438648|ref|ZP_05792464.1| S-adenosyl-methyltransferase MraW [Butyrivibrio crossotus DSM 2876]
 gi|292809242|gb|EFF68447.1| S-adenosyl-methyltransferase MraW [Butyrivibrio crossotus DSM 2876]
          Length = 346

 Score =  295 bits (756), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 104/328 (31%), Positives = 165/328 (50%), Gaps = 29/328 (8%)

Query: 3   SKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---S 59
             + + + S      G H+P+++E+++ +L   PG V LDAT G GG+S    +      
Sbjct: 34  GDTIEKVISKGSTPAGMHIPIMVEEILDVLKVQPGDVGLDATLGYGGHSGKILEKLKGSG 93

Query: 60  NVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSS 115
           ++ +LD DP  +   ++ +RD     + F++ +  F  + +     G  D ++ DLGVSS
Sbjct: 94  HLYSLDIDPIEIVRTEKRLRDKGFSEDVFTVIRTNFKNIDEVSGTAGKFDFLMADLGVSS 153

Query: 116 MQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAH 174
           MQID  +RGFS++  GPLD+R+  S G  AS+ + +    + T +L    +E  A  IA 
Sbjct: 154 MQIDNPERGFSYKNEGPLDLRLDPSKGEPASERLKKLTKDEFTGMLIENSDEPYAKEIAT 213

Query: 175 AIV-KRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPA-----TRSFQALRIFVNNEIEEL 228
            +  + R+     TT DL   I+K + F        A      R+FQALRI VN+E E L
Sbjct: 214 EVFNEFRKKKEINTTTDLYKAIEKALSFIPEKERKDAVKKSSQRTFQALRIDVNSEFEVL 273

Query: 229 AQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI 288
            + L+     +K GG + +++FHS EDRLVK++F                     V   I
Sbjct: 274 EEFLQKLPDVMKEGGRIAILTFHSGEDRLVKQYFKMYKRDG--------------VLSEI 319

Query: 289 TKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           +  V+ P+  + A N R+RS KLR  +R
Sbjct: 320 S-DVIRPSAAECARNGRARSTKLRWAVR 346


>gi|111221622|ref|YP_712416.1| S-adenosyl-methyltransferase MraW [Frankia alni ACN14a]
 gi|123143317|sp|Q0RNP9|RSMH_FRAAA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|111149154|emb|CAJ60837.1| S-adenosyl-dependent methyl transferase [Frankia alni ACN14a]
          Length = 325

 Score =  295 bits (756), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 114/314 (36%), Positives = 176/314 (56%), Gaps = 11/314 (3%)

Query: 19  DHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSC 73
            H PVL ++V+ LL P    PG V++DAT G GG++ +         V+ LDRD  A++ 
Sbjct: 1   MHTPVLTDRVLELLAPALSRPGAVVVDATVGLGGHAAALLAAFPEVRVVGLDRDLDALAH 60

Query: 74  GQETMRD-YKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK 129
             E +R    E+  L  A + ++   +   G   V GV+FDLGVSS+Q+D   RGF++ +
Sbjct: 61  SGERLRALAPERVRLVHAVYDEIGTVLAGLGSARVQGVLFDLGVSSLQLDTDARGFAYSR 120

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM  + G++A++V+N  +   L RIL   GEE+ A RIA ++V+ R   PF T+
Sbjct: 121 DAPLDMRMDATRGLTAAEVLNTYDAAALARILRDYGEERFARRIAESVVRARAVEPFTTS 180

Query: 189 QDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
             L  L++  +   ++    +PA R+FQALRI VN+E++ LA+ L +A  AL  GG L+V
Sbjct: 181 ARLVDLVRDAIPAPARRTGGNPAKRTFQALRIEVNSELDVLARALPAAFDALAVGGRLVV 240

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +S+HSLEDRLVK+     +  ++     +         + +T+      + + A N R+ 
Sbjct: 241 LSYHSLEDRLVKRELRGYAETLVPPDMPVVPAGAEPRLRWLTRGAEPAGEVEKADNPRAA 300

Query: 308 SAKLRAGMRTVERS 321
           S +LRA  RT    
Sbjct: 301 SVRLRAAERTAPNP 314


>gi|153813493|ref|ZP_01966161.1| hypothetical protein RUMOBE_03913 [Ruminococcus obeum ATCC 29174]
 gi|149830437|gb|EDM85529.1| hypothetical protein RUMOBE_03913 [Ruminococcus obeum ATCC 29174]
          Length = 352

 Score =  295 bits (756), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 93/328 (28%), Positives = 161/328 (49%), Gaps = 28/328 (8%)

Query: 5   SCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNV 61
           + + + S  +   G H+ +++ +++  L   PG+   DAT G GG++++         ++
Sbjct: 38  TIEHVISKGNTPAGMHISIMVNEILDFLKIQPGETGFDATLGYGGHTKAMMECLHGEGHM 97

Query: 62  IALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQ 117
            A D DP   +  ++ + +     +  ++    F  + +   + G  D ++ DLGVSSMQ
Sbjct: 98  YATDVDPEESAKTRKRLAEQGFGEDILTVKLQNFCTIDEIAKEAGGFDFILADLGVSSMQ 157

Query: 118 IDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
           ID   RGFSF+  GPLD+R++   GISA++ +++ +  +L  +L    +E     IA AI
Sbjct: 158 IDNPKRGFSFRADGPLDLRLNQEKGISAAERLDKISRDELAGMLYENSDEPYCEEIAKAI 217

Query: 177 VKR-RQSAPFQTTQDLSSLIQKTVYFSKNNRIH-----PATRSFQALRIFVNNEIEELAQ 230
               R+     TT  L  +I++T+ F               R FQALRI VN E E L +
Sbjct: 218 TDEIRKGNRVDTTTKLREIIEETLDFLPEKEKKDTVRKTCQRVFQALRIDVNREFEVLYE 277

Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK 290
            +     ALK GG + +++FHS ED+LVKK                 +     ++    K
Sbjct: 278 FMEKLPDALKPGGRVAILTFHSGEDKLVKKALK--------------AGYKAGIYSDYAK 323

Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMRTV 318
            V+ P+ ++ A N R+RS K+R  +++ 
Sbjct: 324 DVIRPSAQECAQNGRARSTKMRWAVKSE 351


>gi|295109383|emb|CBL23336.1| S-adenosyl-methyltransferase MraW [Ruminococcus obeum A2-162]
          Length = 350

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 95/326 (29%), Positives = 162/326 (49%), Gaps = 28/326 (8%)

Query: 5   SCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNV 61
           + + + S  +   G H+ +++++++  L   PG+   DAT G GG++++  +      ++
Sbjct: 38  TIEHVISKGNTPAGMHISIMVKEILDFLKIQPGETGFDATLGYGGHTKAMMECLHGEGHM 97

Query: 62  IALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQ 117
            A D DP   +  ++ + +     +  ++    F  + +   + G  D ++ DLGVSSMQ
Sbjct: 98  YATDVDPEESAKTRKRLAEQGFGEDILTVKLQNFCTIDEIAKEAGGFDFILADLGVSSMQ 157

Query: 118 IDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
           ID   RGFSF+  GPLD+R++   GISA++ ++     +L  +L    +E     IA AI
Sbjct: 158 IDNPKRGFSFRADGPLDLRLNQEKGISAAERLDTIGRDELAGMLYENSDEPYCEEIAKAI 217

Query: 177 VKR-RQSAPFQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQ 230
               R+     TT  L  +I+KT+ F      K+       R FQALRI VN E E L +
Sbjct: 218 TDEIRRGNRVDTTTKLREIIEKTLSFIPEKERKDTVRKTCQRVFQALRIDVNREFEVLYE 277

Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK 290
            +     ALK GG + +++FHS ED+LVKK                 +     ++    K
Sbjct: 278 FMEKLPDALKPGGRVAILTFHSGEDKLVKKALK--------------AGYKAGIYSDYAK 323

Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMR 316
            V+ P+ ++ A N R+RS K+R  ++
Sbjct: 324 DVIRPSAQECAQNGRARSTKMRWAVK 349


>gi|88809878|ref|ZP_01125384.1| methyltransferase [Synechococcus sp. WH 7805]
 gi|88786262|gb|EAR17423.1| methyltransferase [Synechococcus sp. WH 7805]
          Length = 312

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 105/313 (33%), Positives = 157/313 (50%), Gaps = 31/313 (9%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPG-----KVILDATFGAGGYSRSFCKMGS--NVIALDRD 67
            +   HVPVL + ++  L+  P       +++DAT G GG+S           +I LD+D
Sbjct: 9   DSAFQHVPVLADVLLKTLDQEPSDHWQSGLVVDATLGGGGHSSLLLDRYPGLRLIGLDQD 68

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
             A +     +R ++E+ ++    F+   DY P      V+ DLGVSS Q+D   RGFSF
Sbjct: 69  ATARAAAAARLRPWQERVTIVATNFA---DYSPPGSASLVLADLGVSSPQLDVAQRGFSF 125

Query: 128 QKSGPLDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ-SAP 184
           +  GPLDMRM+  G   +A+ ++ +    DL  ++   GEE+ + RIA  I         
Sbjct: 126 RLDGPLDMRMNPEGGGETAAQLIERLKESDLADLIYAYGEERLSRRIARRIKADLAVQGT 185

Query: 185 FQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
           +  T  L+  I        +  RIHPATR+FQALRI VN+E+  L + L  +   L+ GG
Sbjct: 186 YSGTAALAYAIAGCYPPKARRGRIHPATRTFQALRIAVNHELAALDRLLEQSPDWLQPGG 245

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
           +L ++SFHSLEDR VK  F                       + IT++ +  ++++   N
Sbjct: 246 MLAIISFHSLEDRRVKTAFLQDE-----------------RLERITRRPLTASEDEQERN 288

Query: 304 RRSRSAKLRAGMR 316
            RSRSAKLR   R
Sbjct: 289 ARSRSAKLRIARR 301


>gi|84999750|ref|XP_954596.1| s-adenosyl-methyltransferase [Theileria annulata]
 gi|65305594|emb|CAI73919.1| s-adenosyl-methyltransferase, putative [Theileria annulata]
          Length = 389

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 105/326 (32%), Positives = 170/326 (52%), Gaps = 37/326 (11%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
           +H+PVLL++ +  L   P  + LD T G GG++    +       +I++DRDP +V   +
Sbjct: 72  EHIPVLLKESMEYLITDPKGLYLDVTLGYGGHTEEILRRINPNGRLISIDRDPESVYFNR 131

Query: 76  ETMRDY--KEQFSLFQATFSQLQDYV-----PDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             ++ Y    + S+    FS + D +     P++G  G++ DLG+S+ Q++   RGFS+ 
Sbjct: 132 NRLKTYIDDSRLSVELGKFSGIIDLLKSLKLPNEGYTGIIADLGLSTHQLENSIRGFSYM 191

Query: 129 KSGPLDMRMSC----------------SGISASDVVNQANVKDLTRILGILGEEKQASRI 172
           K+GPLDMRMS                 S  +A  +VN+++   L +I    G+E +A+ I
Sbjct: 192 KNGPLDMRMSSPLNDPFNPNFKIDVKSSENTAYQLVNKSDESTLRKIFKEFGQEPRAASI 251

Query: 173 AHAIV-KRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQG 231
           A  IV KRR      TT  L S++  ++     +++   +R FQALRI VN+E+ EL+  
Sbjct: 252 AKKIVEKRRILGEIDTTDKLKSVVMDSLPMFHRSKMRTLSRIFQALRIKVNDELNELSSF 311

Query: 232 LRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKK 291
           L      LK  G  + +++H+LEDRLVK  F +      +             F  +TKK
Sbjct: 312 LNMIPHLLKYNGRFVCITYHALEDRLVKNSFINLRNLKTST----------VKFNILTKK 361

Query: 292 VVVPTQEDVAFNRRSRSAKLRAGMRT 317
            ++PT+E+V  N +SR+AKLR   + 
Sbjct: 362 CILPTREEVESNIKSRTAKLRCIEKV 387


>gi|302387032|ref|YP_003822854.1| S-adenosyl-methyltransferase MraW [Clostridium saccharolyticum WM1]
 gi|302197660|gb|ADL05231.1| S-adenosyl-methyltransferase MraW [Clostridium saccharolyticum WM1]
          Length = 349

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 104/317 (32%), Positives = 158/317 (49%), Gaps = 28/317 (8%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFA 70
           +   G H  + +++++  L   PG+  LDAT G GG++    K      ++ A D D   
Sbjct: 46  NTPAGMHRSICVKEILDFLQITPGQTGLDATLGYGGHTLEMLKCLNSKGHLYATDVDSIE 105

Query: 71  VSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFS 126
           +   +E +       E  ++ Q  FS +     + G ++ ++ DLGVSSMQID  +RGFS
Sbjct: 106 LPRTRERLEHLGYGSEILTIRQTNFSNIDQITSESGPLNFILADLGVSSMQIDNPERGFS 165

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP- 184
           F+  GPLD+R++ S GISA+D +   + ++L  +L    +E  A+ IA AIV   +    
Sbjct: 166 FKTEGPLDLRLNPSKGISAADRLKTISQEELHGMLLENADEPHAAEIAGAIVTAIKKGTD 225

Query: 185 FQTTQDLSSLIQKTVYFSKNNR-----IHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
             TT  L  +IQ  + F               RSFQALRI VNNE E L + L     AL
Sbjct: 226 ITTTSQLQQIIQDALKFIPEKERNNEIKKSCQRSFQALRIDVNNEFEVLYEFLEKLPAAL 285

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
             GG + +++FHS EDRLVKK F                     V++ IT + + P+  +
Sbjct: 286 AEGGRVAILTFHSGEDRLVKKSFQRF--------------YREGVYKEITPEAIRPSAAE 331

Query: 300 VAFNRRSRSAKLRAGMR 316
            + N R+R AKLR  ++
Sbjct: 332 CSSNSRARCAKLRWAIK 348


>gi|240047424|ref|YP_002960812.1| S-adenosyl-L-methionine-dependent methyltransf [Mycoplasma
           conjunctivae HRC/581]
 gi|263458177|sp|C5J697|RSMH_MYCCR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|239984996|emb|CAT04989.1| S-adenosyl-L-methionine-dependent methyltransf [Mycoplasma
           conjunctivae]
          Length = 296

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 96/305 (31%), Positives = 149/305 (48%), Gaps = 16/305 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76
            H+PVL++ +I  LN     + +D T G GG++ +     +   +I  D+D  A+   +E
Sbjct: 1   MHIPVLIDSLIENLNIREDGIYVDLTLGRGGHAAAILSKLTTGLLIVFDKDEKAIEESKE 60

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +    +        F      +       VDG + DLGVSS QID G+RGFS+ K+  L
Sbjct: 61  RLLAISKNVIFIWEDFRNFAVELEKRQIYKVDGFIMDLGVSSPQIDQGERGFSYTKNARL 120

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+ +  + A  VVN  N   LT++L   GE K A  +  AI+  R   P  TT +L 
Sbjct: 121 DMRMNQNQELDAHHVVNNYNQDLLTKVLQNYGELKNARSLTKAIIDSR---PINTTFELV 177

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +LI+ +   +   + +     FQA+RI VN+E+  L   L      LK    + +++FHS
Sbjct: 178 NLIRSSSPAALLRKKNIVKNVFQAIRIEVNDELGALEAFLSLFISYLKQDSQVAIITFHS 237

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VK  F S             ++      Q  + K + P+  ++  N+RS+SAKLR
Sbjct: 238 LEDRIVKMKFKSLLISS-------KTHLFDPRAQQFSVKTIKPSTSEIQLNKRSKSAKLR 290

Query: 313 AGMRT 317
              + 
Sbjct: 291 ILSKN 295


>gi|111115132|ref|YP_709750.1| hypothetical protein BAPKO_0317 [Borrelia afzelii PKo]
 gi|216263935|ref|ZP_03435929.1| S-adenosyl-methyltransferase MraW [Borrelia afzelii ACA-1]
 gi|123145742|sp|Q0SNK4|RSMH_BORAP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|110890406|gb|ABH01574.1| conserved hypothetical protein [Borrelia afzelii PKo]
 gi|215979979|gb|EEC20801.1| S-adenosyl-methyltransferase MraW [Borrelia afzelii ACA-1]
          Length = 296

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 98/306 (32%), Positives = 168/306 (54%), Gaps = 24/306 (7%)

Query: 20  HVPVLLEKV---IALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           H PVLL+ +   I  L      + +D+T G G ++++  +     +++ ++RD   +   
Sbjct: 7   HFPVLLDAICKLIEDLPVKSDLIYIDSTLGEGAHAKAILEKYDFLSLVGIERDSQILERA 66

Query: 75  QETMRDYKEQFSLFQATFSQL-QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           ++ +  +K++ + F   F     +Y  +   + ++ DLG+S        +GFSF +  PL
Sbjct: 67  KQFLLIFKDRITYFNDWFDNFFANYPLNVKANFILVDLGISMFHYKDSKKGFSFLEDEPL 126

Query: 134 DMRMSCSGISAS--DVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           DMR+  S  S S  ++VN  +  DL  ++  L  E  + RI+ AIV+ R+    QTT++L
Sbjct: 127 DMRLCSSSCSISAAEIVNTFSKYDLESLIYNLSNEHYSRRISKAIVEYRKIKKIQTTKEL 186

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            S+I K   FSK  +I+PAT++FQALRI+VN+E+  L + L    + L   G+L +++FH
Sbjct: 187 QSIINKVYPFSKV-KINPATKTFQALRIYVNDELARLKRSLPLWVENLAKDGILAIITFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           S+EDR+VK FF S S                 ++  I+KK ++P+ +++  N+ SRSAKL
Sbjct: 246 SIEDRIVKDFFRSLSCD---------------LYVKISKKPIIPSSDEIKKNKPSRSAKL 290

Query: 312 RAGMRT 317
           RA  + 
Sbjct: 291 RAVKKI 296


>gi|293977957|ref|YP_003543387.1| S-adenosyl-methyltransferase MraW [Candidatus Sulcia muelleri DMIN]
 gi|292667888|gb|ADE35523.1| S-adenosyl-methyltransferase MraW [Candidatus Sulcia muelleri DMIN]
          Length = 300

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 93/304 (30%), Positives = 158/304 (51%), Gaps = 17/304 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H+PVLL+++++ L      + +D TFG GG+S S          VIA D+D  ++     
Sbjct: 5   HIPVLLDEILSFLVKEKNGIYIDTTFGGGGHSLSLLNKLSNKGRVIAFDKDIDSIKNNN- 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +F+L +  +  ++  +       V G++ DLG+SS QI+   RGFS + +  L
Sbjct: 64  ---ILDARFNLIKTNYRFIKKKIKLFNLNKVSGILADLGISSHQINSPKRGFSIRYNSIL 120

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM   + I+A  ++N  +  +L  +L   GE K A  I+  I+K R+    ++T DL 
Sbjct: 121 DMRMDTYNKINAQHIINNYSYNELYNLLIRFGEVKNAKNISKLILKHRKKKYIKSTFDLI 180

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            ++     F    +    ++ FQ+LRI VN+EI  L   L+++   LK GG + V+S+HS
Sbjct: 181 KILN----FFYKKKNKYLSKIFQSLRIEVNDEINALKDLLKNSLSILKPGGRIAVISYHS 236

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           +EDR+VKKF  + +   +       +N  P +   +  +++  ++E+   N RSRSA LR
Sbjct: 237 IEDRIVKKFLKTGNFNGIIPYDEYGNNLSPLI--LLEPRIIFSSKEEKKENNRSRSAILR 294

Query: 313 AGMR 316
              +
Sbjct: 295 IAEK 298


>gi|325989697|ref|YP_004249396.1| S-adenosyl-L-methionine-dependent methyltransferas [Mycoplasma suis
           KI3806]
 gi|323574782|emb|CBZ40442.1| S-adenosyl-L-methionine-dependent methyltransferas [Mycoplasma
           suis]
          Length = 304

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 85/308 (27%), Positives = 151/308 (49%), Gaps = 11/308 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H+PV+L +V      +   + +D TFG GG+S+   +       +I +D DP  +    
Sbjct: 1   MHIPVMLREVCENWLSSANGIYIDCTFGCGGHSKELLRSLGENSRLIGMDVDPKVIPYAN 60

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG- 131
           E +     +FS     ++ +++Y     +   DG++FDLG+S++Q+   +R FS+  S  
Sbjct: 61  E-LSSQDSRFSFLNVNYTSMRNYWKTNSLPPADGILFDLGLSTLQLKDEERTFSYNSSSS 119

Query: 132 PLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
            L++R    G S  +++N    K L  I    G   +A R+   I++ R++ P    + L
Sbjct: 120 TLELRFGLEGKSVYEILNNYPPKKLNWIFKKYGNISEAERLTQTIIQFRKNTPITEVKQL 179

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             +I+++   +K    +P    FQ+LRI  NNE+    + LR A + LK  G L++++FH
Sbjct: 180 KEIIERSKILNKRKNKNPMKLIFQSLRIECNNELNCFKEALRQAAELLKVNGKLLIITFH 239

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLED +V ++    S  +            P  F   +   ++P++ ++  N  SRSAKL
Sbjct: 240 SLEDEIVLEWKRQNSSYIKIPE---MGEIIPPRFTLKSNSPLLPSRAEIETNWASRSAKL 296

Query: 312 RAGMRTVE 319
               +T E
Sbjct: 297 WVFTKTRE 304


>gi|253577924|ref|ZP_04855196.1| MraW methylase MraW [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850242|gb|EES78200.1| MraW methylase MraW [Ruminococcus sp. 5_1_39BFAA]
          Length = 351

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 93/326 (28%), Positives = 164/326 (50%), Gaps = 28/326 (8%)

Query: 5   SCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNV 61
           + + +    +   G H+ +++++++  LN  PG+   DAT G GG++++  +      ++
Sbjct: 38  TIEHVIQKGNTPAGMHISIMVKEILDFLNIQPGETGFDATLGYGGHTKAMLQCLNGKGHI 97

Query: 62  IALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQ 117
            A D DP   +  ++ + +     E  ++    F  + +   + G  D ++ DLGVSSMQ
Sbjct: 98  YATDVDPEESAKTKKRLAEQGFGEELLTVKLQNFCTIDEIAKEVGGFDFILADLGVSSMQ 157

Query: 118 IDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
           ID   RGFSF+  GPLD+R++  +GISA+  ++  + ++L  +L    +E     +A AI
Sbjct: 158 IDNPKRGFSFKTDGPLDLRLNQETGISAAQRLDTISREELAGMLCENSDEPYCEELAKAI 217

Query: 177 VKR-RQSAPFQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQ 230
               R+     TT  L  +I+KT+ F      K        R+FQALRI VN+E E L +
Sbjct: 218 TDEIRRGNHIDTTTKLRQVIEKTLDFLPEKEKKETIKKTCQRTFQALRIDVNHEFEVLYE 277

Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK 290
            +     AL+ GG + +++FHS ED+LVKK   +     +   +               K
Sbjct: 278 FMEKLPDALRPGGRVAILTFHSGEDKLVKKALKAGYKDGIYSDYA--------------K 323

Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMR 316
            V+ P+ ++   N R+RS K+R  ++
Sbjct: 324 DVIRPSAKECTQNPRARSTKMRWAIK 349


>gi|47459215|ref|YP_016077.1| S-adenosylmethionine-dependent methyltransferase [Mycoplasma mobile
           163K]
 gi|51316218|sp|Q6KHR2|RSMH_MYCMO RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|47458544|gb|AAT27866.1| S-adenosylmethionine-dependent methyltransferase [Mycoplasma mobile
           163K]
          Length = 302

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 94/305 (30%), Positives = 160/305 (52%), Gaps = 15/305 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H+P+LL +V++  N     V++D T G  G+S+   K      +I +D+D  A++  +E 
Sbjct: 6   HIPILLNEVLSAFNLKETDVVIDLTLGRAGHSQEMLKKIPKGLLIGIDKDKSAITFSKEK 65

Query: 78  MRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +      F LF + FS++ D + +     V+ ++ DLG+SS QID  +RGFS+ K   LD
Sbjct: 66  LEQIGSNFKLFHSDFSKISDLLKELKISKVNAILIDLGISSPQIDNANRGFSYNKESRLD 125

Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM+    + A  +VN  + + L  +L    E K + +IA  I   R   P +TT  LS 
Sbjct: 126 MRMNLDQKLDAHFIVNSYSEEQLKNLLYRNAEIKNSRQIAKIITSNR---PIETTLQLSV 182

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           +++K +      +  P+   FQALR+ VN+EI  L   L++    L+  G + +++F+S+
Sbjct: 183 ILKKYLPAFIVRKKDPSKAVFQALRVEVNDEINSLNFLLKNLVSILEENGKVAIITFNSI 242

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           EDR+VKK+F S     +              F+    K  +P+++++  N RS+SAK+R 
Sbjct: 243 EDRIVKKYFGSFIKDDV---LAFLPTKKEKEFEV---KTYLPSKKELEENPRSKSAKMRV 296

Query: 314 GMRTV 318
             +  
Sbjct: 297 LKKIE 301


>gi|330902009|gb|EGH33332.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 263

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 99/263 (37%), Positives = 155/263 (58%), Gaps = 9/263 (3%)

Query: 61  VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSM 116
           ++  D+DP A++ GQ  +     +F + Q +F++L     ++G    V G++ DLGVSS 
Sbjct: 1   LLGFDKDPQAIATGQA-LAAEDGRFVIVQRSFAELGSETQERGLAGKVSGILLDLGVSSP 59

Query: 117 QIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175
           Q+D  +RGFSF   GPLDMRM  + G+SA++ +  A  +++ R+    GEE+ A R+A+A
Sbjct: 60  QLDDPERGFSFMNDGPLDMRMDPTCGVSAAEFIATAPAEEIARVFKEYGEERFAKRMANA 119

Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           +V RR+  PF+ T DL+ +++      +  + +PATR+FQ LRI VNNE+ +L  GL +A
Sbjct: 120 VVARREVQPFERTADLAEVLKVANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAA 178

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRS-GKVMAVRHMIPSNAHPAVFQS-ITKKVV 293
             AL+ GG L+V+SFHSLEDR+VK F    + G+   +   +P    P   +  I  K  
Sbjct: 179 LDALEVGGRLVVISFHSLEDRIVKLFMRKLAKGEADNMPRNLPIQYKPFEPKIKIHGKAQ 238

Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316
             +  +   N RSRSA +R   +
Sbjct: 239 FASDVETKANPRSRSAVMRVAEK 261


>gi|124024959|ref|YP_001014075.1| S-adenosylmethionine-dependent methyltransferase [Prochlorococcus
           marinus str. NATL1A]
 gi|262824926|sp|A2C000|RSMH_PROM1 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|123960027|gb|ABM74810.1| Predicted S-adenosylmethionine-dependent methyltransferase
           [Prochlorococcus marinus str. NATL1A]
          Length = 304

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 107/310 (34%), Positives = 165/310 (53%), Gaps = 30/310 (9%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPG-----KVILDATFGAGGYSRSFCKMGS--NVIALDR 66
             +  +HVPV+ +++I  L   P       +I+DAT G GG+S    +      +I LD+
Sbjct: 8   SSSNFNHVPVMGKEIIQSLKELPSELTKQGLIIDATIGGGGHSAQILENFPGIKIIGLDQ 67

Query: 67  DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126
           DP A     + +  +  +  +    F+     + ++ +  V+ DLGVSS Q+D   RGFS
Sbjct: 68  DPMAREAASKKLIKFGTRIKIISTNFADFS--LDEQAI-CVLADLGVSSHQLDEPSRGFS 124

Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAP 184
           F+ +GP+DMRM+   G SA++++   + ++L  ++  LGEEK++ RIA  I     ++ P
Sbjct: 125 FRLNGPIDMRMNPKEGSSAAELIETLSEQNLADLIYELGEEKRSRRIARKIKNDLAENGP 184

Query: 185 FQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
           +  TQDLS  I        +  RIHP+TR+FQALRI VNNE+  L   L  A   L   G
Sbjct: 185 YSGTQDLSYAIAGCFPPKQRYGRIHPSTRTFQALRIAVNNELGSLESLLLKAPNWLLENG 244

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
           L +V+SFHSLEDR VK  F + +                   + ++KK +  + E++  N
Sbjct: 245 LFMVMSFHSLEDRRVKSSFKTDN-----------------RLKVLSKKPIRASPEEIELN 287

Query: 304 RRSRSAKLRA 313
            RS+SAKLR 
Sbjct: 288 PRSKSAKLRI 297


>gi|78185678|ref|YP_378112.1| S-adenosyl-methyltransferase MraW [Synechococcus sp. CC9902]
 gi|123581009|sp|Q3AW00|RSMH_SYNS9 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|78169972|gb|ABB27069.1| methyltransferase [Synechococcus sp. CC9902]
          Length = 294

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 109/306 (35%), Positives = 158/306 (51%), Gaps = 28/306 (9%)

Query: 20  HVPVLLEKVIALLN--PAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQ 75
           HVPVL + V+A     P    V++DAT G GG+S    +      +I LD+DP A +   
Sbjct: 6   HVPVLADAVVAGAEHLPHHNGVLIDATLGGGGHSALLLERFPGLRLIGLDQDPTARAAAA 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           E +  + ++  +    F+    Y P   V  V+ DLGVSS Q+D  +RGFSF+  GPLDM
Sbjct: 66  ERLAAFADRVEILATNFA---SYTPPAPVLMVLADLGVSSPQLDVAERGFSFRLDGPLDM 122

Query: 136 RMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTTQDLS 192
           RM+    G +A++++++     L  ++   GEE+ + RIA  I        P++ T  L+
Sbjct: 123 RMNPGSDGETAAELIDRLEENALADLIYGYGEERLSRRIARRIKADLAAQGPYEGTAALA 182

Query: 193 SLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             +        +  RIHPATR+FQALRI VN+E+  L + L+ A   L+ GG++ V+SFH
Sbjct: 183 YAVAGCYPPKARRGRIHPATRTFQALRIAVNDELAVLDRLLQQAPDWLETGGVMGVISFH 242

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR VK  F                       + IT+K  V T ++   N RSRSAK 
Sbjct: 243 SLEDRRVKTAFLQDE-----------------RLERITRKPTVATDDEQNRNPRSRSAKW 285

Query: 312 RAGMRT 317
           R   R 
Sbjct: 286 RLARRV 291


>gi|167745358|ref|ZP_02417485.1| hypothetical protein ANACAC_00049 [Anaerostipes caccae DSM 14662]
 gi|167655079|gb|EDR99208.1| hypothetical protein ANACAC_00049 [Anaerostipes caccae DSM 14662]
          Length = 367

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 100/315 (31%), Positives = 158/315 (50%), Gaps = 28/315 (8%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
             G H+ + +++++  L   PG+  LDAT G GG+++   K      ++ ALD D   + 
Sbjct: 66  PAGMHISICVKEILEFLQIKPGQTGLDATLGYGGHTQEMLKCLDSKGHLYALDVDAIELE 125

Query: 73  CGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQ 128
             ++ +       E  ++ Q  F+ +     + G  D V+ DLGVSSMQID  DRGFS++
Sbjct: 126 KTRKRLEKLGYGPEILTIRQMNFADIDKIAEEAGPFDFVLADLGVSSMQIDNPDRGFSYK 185

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV-KRRQSAPFQ 186
             GPLD+R++   G+SA++ +     ++L  +L    +E  A  IA A+V K ++     
Sbjct: 186 TEGPLDLRLNPEKGVSAAERLRTITRQELQGMLMENSDEPHADVIARAVVSKIKKGTAID 245

Query: 187 TTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
           TT  L  +I++ + F      K        R+FQALRI VN+E E L + L      L  
Sbjct: 246 TTTKLREVIEEALEFLPEHEKKEAVKKTCQRTFQALRIDVNSEFEVLYEFLEKLPNVLAK 305

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           GG   +++FHS EDRLVKK F                     V+Q I+  V+ P+ E+  
Sbjct: 306 GGRAAILTFHSGEDRLVKKSFKRL--------------LREGVYQEISTDVIRPSAEECR 351

Query: 302 FNRRSRSAKLRAGMR 316
            N R+RS K+R  ++
Sbjct: 352 MNSRARSTKMRWAIK 366


>gi|94502345|ref|ZP_01308815.1| S-adenosyl-methyltransferase MraW [Candidatus Sulcia muelleri str.
           Hc (Homalodisca coagulata)]
 gi|161833845|ref|YP_001598041.1| S-adenosyl-methyltransferase MraW [Candidatus Sulcia muelleri GWSS]
 gi|259495905|sp|A8Z694|RSMH_SULMW RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|94451100|gb|EAT14055.1| S-adenosyl-methyltransferase MraW [Candidatus Sulcia muelleri str.
           Hc (Homalodisca coagulata)]
 gi|152206335|gb|ABS30645.1| S-adenosyl-methyltransferase MraW [Candidatus Sulcia muelleri GWSS]
          Length = 300

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 93/304 (30%), Positives = 158/304 (51%), Gaps = 17/304 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H+PVLL+++++ L      + +D TFG GG+S S          VIA D+D  ++     
Sbjct: 5   HIPVLLDEILSFLVKEKNGIYIDTTFGGGGHSLSLLNKLSNKGRVIAFDKDIDSIKNNN- 63

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +F+L +  +  ++  +       V G++ DLG+SS QI+   RGFS + +  L
Sbjct: 64  ---ILDARFNLIKTNYRFIKKKIKLFNLNKVSGILADLGISSHQINSPKRGFSIRYNSIL 120

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM   + I+A  ++N  +  +L  +L   GE K A  I+  I+K R+    ++T DL 
Sbjct: 121 DMRMDTYNKINAQHIINNYSYNELYNLLIRFGEVKNAKNISKLILKHRKKKYIKSTFDLI 180

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            ++     F    +    ++ FQ+LRI VN+EI  L   L+++   LK GG + V+S+HS
Sbjct: 181 KILN----FFYKKKNKFLSKIFQSLRIEVNDEINALKDLLKNSLSILKPGGRIAVISYHS 236

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           +EDR+VKKF  + +   +       +N  P +   +  +++  ++E+   N RSRSA LR
Sbjct: 237 IEDRIVKKFLKTGNFNGIIPYDEYGNNLSPLI--LLEPRIIFSSKEEKKENNRSRSAILR 294

Query: 313 AGMR 316
              +
Sbjct: 295 IAEK 298


>gi|224029029|gb|ACN33590.1| unknown [Zea mays]
          Length = 436

 Score =  293 bits (751), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 119/350 (34%), Positives = 162/350 (46%), Gaps = 51/350 (14%)

Query: 19  DHVPVLLEKVIALLN-PAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDP------ 68
            H+PVLL +V+A    P P +  +D T GA G+S +  +    +   I +D DP      
Sbjct: 87  HHIPVLLGEVLAAFRRPRPLRSFVDCTLGAAGHSLAMMEAHPELELYIGMDVDPSALGIG 146

Query: 69  ----FAVSCGQETMRDYKE---------------QFSLFQATFSQLQD--YVPDKGVDGV 107
                A   G+E   +  E                F   +   S + +   V   GVDG+
Sbjct: 147 HGHIEAFLAGREREANGGEDDALLGTLRAYTHVKNFKYIKQVLSSVDESLVVGSSGVDGI 206

Query: 108 VFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEE 166
           + DLG+SSMQ++  +RGFS  + GPLDMRM     + A D++N     +L RIL   GEE
Sbjct: 207 LIDLGMSSMQVNKSNRGFSVLQDGPLDMRMDPKATLRAEDILNSWPELELGRILREYGEE 266

Query: 167 KQASRIAHAIVKRRQSAPFQTTQDLSSLIQK--TVYFSKNNRIHPATRSFQALRIFVNNE 224
                +   IVK R      +T DL  LIQ+  T+   +   I  +TR FQALRI VN+E
Sbjct: 267 SNWQSVQKQIVKARSVGGLHSTGDLVKLIQRMCTISSGRQGWIKTSTRVFQALRIAVNDE 326

Query: 225 IEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH---------M 275
           +  L   L S    L  GG L V+SFHSLEDR+VKK F        A             
Sbjct: 327 LRVLEDSLHSCFDCLATGGRLAVISFHSLEDRIVKKTFLELIHGGEANEEDDKDDQALTD 386

Query: 276 IPSNAHPAVFQ--------SITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           I     P   Q         +TK+ + P+QE+   N+R RSAKLR   +T
Sbjct: 387 IEDGDEPWSGQRVQGRNGTVLTKRPITPSQEEEKLNQRCRSAKLRVIQKT 436


>gi|297170224|gb|ADI21262.1| predicted S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [uncultured myxobacterium
           HF0010_08B07]
          Length = 285

 Score =  293 bits (750), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 98/284 (34%), Positives = 152/284 (53%), Gaps = 12/284 (4%)

Query: 37  GKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFS 93
             + LD TFG GG+++           +I+ D D  A+   +       + F   +  FS
Sbjct: 9   NGLYLDCTFGRGGHTKKILDKLSSEGQLISFDLDDDAMKVAKNI---DNKNFKFIKTNFS 65

Query: 94  QLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQAN 152
            + DYV D  + GV+ D GVSS Q+D  +RGFSFQ  GPLDMR +    ++  D++   +
Sbjct: 66  MIDDYVEDDSLSGVLIDCGVSSPQLDEPERGFSFQTKGPLDMRFNQEQKLTCKDIIENYS 125

Query: 153 VKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATR 212
            K++  IL   GEEK++ RIA  IVK+R+      T  L+ +I+         + HPAT+
Sbjct: 126 EKEIATILWKFGEEKESRRIAKLIVKQREQNVIDNTLVLAEIIKTAKTV--KTKKHPATK 183

Query: 213 SFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAV 272
           SFQALR+ VN+E E L   L   +  L   G L++++FHSLEDR+ K+ F  +       
Sbjct: 184 SFQALRMAVNSEFENLTTCLDRIKDKLTKSGKLVIITFHSLEDRIAKQTFKPKINFHEKN 243

Query: 273 RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
             +I  +     F+    K++ P+QE+++ N R+RSAK+R   +
Sbjct: 244 LPLIYEDVSDK-FKI--SKIIYPSQEEISMNPRARSAKMRIIEK 284


>gi|162447772|ref|YP_001620904.1| S-adenosylmethionine-dependent methyltransferase [Acholeplasma
           laidlawii PG-8A]
 gi|263433290|sp|A9NGP8|RSMH2_ACHLI RecName: Full=Ribosomal RNA small subunit methyltransferase H 2;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase 2;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH 2
 gi|161985879|gb|ABX81528.1| S-adenosylmethionine-dependent methyltransferase [Acholeplasma
           laidlawii PG-8A]
          Length = 344

 Score =  293 bits (750), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 98/327 (29%), Positives = 164/327 (50%), Gaps = 29/327 (8%)

Query: 3   SKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---S 59
            ++ + +    +   G H  +++++++   +   G+V +D T G GG+S+   K      
Sbjct: 33  KETIQKVMKKGNTPAGMHRSIMVDEILHFFDIKLGQVGIDLTTGFGGHSKEILKKLNHTG 92

Query: 60  NVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSM 116
           ++  +D+DP  +   +  +  Y    + F+L Q  F    D +  +G D ++ DLGVSSM
Sbjct: 93  HLHGIDQDPIELPKTRARLESYGFNKDNFTLHQLNFKDF-DAIDTEGFDFILADLGVSSM 151

Query: 117 QIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175
           QID  DRGF+F++ GPLD+RM+ + GI A   + + +  ++  +L    +E  A  IA  
Sbjct: 152 QIDNPDRGFTFREEGPLDLRMNPNVGIPAYVRLLEMSEIEIEHMLIENADEIYAKEIAKE 211

Query: 176 IVKRRQSAP-FQTTQDLSSLIQKTV-----YFSKNNRIHPATRSFQALRIFVNNEIEELA 229
           I K +      +TT DL  +I   +        +      ++R+FQALRI VN+E E L 
Sbjct: 212 ITKAKIQGRYIRTTLDLHQVIASALQKVSKKVYEEELKKASSRTFQALRIDVNSEYEVLF 271

Query: 230 QGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT 289
           + L      L  GG + ++SFHS EDRLVKK F       +                  T
Sbjct: 272 EMLDKLPGKLNPGGKVAILSFHSGEDRLVKKAFKQYLNDGVFSM---------------T 316

Query: 290 KKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           +  ++P++E+V  N R+RSAKLR  ++
Sbjct: 317 EGPILPSKEEVFNNPRARSAKLRIAIK 343


>gi|12045077|ref|NP_072888.1| S-adenosyl-methyltransferase MraW [Mycoplasma genitalium G37]
 gi|255660224|ref|ZP_05405633.1| S-adenosyl-methyltransferase MraW [Mycoplasma genitalium G37]
 gi|1351515|sp|P47464|RSMH_MYCGE RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|3844825|gb|AAC71443.1| S-adenosyl-methyltransferase MraW [Mycoplasma genitalium G37]
 gi|166078718|gb|ABY79336.1| S-adenosyl-methyltransferase MraW [synthetic Mycoplasma genitalium
           JCVI-1.0]
          Length = 309

 Score =  293 bits (750), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 92/306 (30%), Positives = 151/306 (49%), Gaps = 12/306 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQET 77
           H  VL+ +VI  LN  P    LD T G  G+S+   +      +   D D  +++   + 
Sbjct: 8   HQSVLINEVIHNLNINPCGNYLDLTAGFAGHSQKILEKLTTGTLTINDVDKESINF-CQK 66

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           +        +    F+    ++    +   DG++ DLGVSS Q++  +RGFSF+  GP+D
Sbjct: 67  LFFKNNNVVIIHDNFANFPVHLKQLSITKFDGILMDLGVSSHQLNQPNRGFSFKNDGPID 126

Query: 135 MRMSCSGI--SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           MRM  S    +A  V+     + L+ IL   G+ K    IA  + K  Q+    TT  L+
Sbjct: 127 MRMDQSNQKNTALTVLKNLTEQKLSLILKKYGDIKHPKPIAIGLKKAVQTEKNLTTTQLA 186

Query: 193 SLIQK-TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            ++++    F K    +   + FQA+RI++N+EI  L   L      LK     +V+ FH
Sbjct: 187 KVVKECATGFEKYQSRNYLAKVFQAIRIYLNDEITNLKTALTFIPNLLKNNSRFLVIVFH 246

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           S+E+++V+ F A  +  +      +P    PA +Q ITKK ++P+Q+++  N RSRSAKL
Sbjct: 247 SIEEKIVRNFIAKLTSFIQP--EALPIKLTPA-YQLITKKPILPSQKELELNPRSRSAKL 303

Query: 312 RAGMRT 317
               + 
Sbjct: 304 FVIQKN 309


>gi|153855593|ref|ZP_01996709.1| hypothetical protein DORLON_02727 [Dorea longicatena DSM 13814]
 gi|149752014|gb|EDM61945.1| hypothetical protein DORLON_02727 [Dorea longicatena DSM 13814]
          Length = 354

 Score =  293 bits (750), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 106/334 (31%), Positives = 164/334 (49%), Gaps = 31/334 (9%)

Query: 3   SKSCKTMSSAIHH---TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG- 58
            K   T+S  I       G H+ + + +++   +  PG+  LDAT G GG++    +   
Sbjct: 35  EKYADTISKVIKKGGTPAGMHISICVNEILDFFDIQPGQQGLDATLGYGGHTSKMLEKLQ 94

Query: 59  --SNVIALDRDPFAVSCGQETMRD--YKEQFSLFQ-ATFSQLQDYVPDKG-VDGVVFDLG 112
              ++  LD DP   +  ++ + +  +       +   F+ +     + G  D V+ DLG
Sbjct: 95  GEGHIYGLDVDPIESAKTKKRLEEKGFGPNILTVKLENFANIDKVAEEAGKFDFVLADLG 154

Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASR 171
           VSSMQID  DRGF+F+  GPLD+RM+   GISA++ +   + ++LT +L    +E  A  
Sbjct: 155 VSSMQIDNPDRGFTFKAEGPLDLRMNPEKGISAAERLRDISKEELTGMLIENSDEPYAEE 214

Query: 172 IAHAI-VKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPA-----TRSFQALRIFVNNEI 225
           IA AI  K R+    +TT  L  +I++T+ F        A      R FQALRI VNNE 
Sbjct: 215 IAEAITEKIRKGGKIETTTGLHQVIEETLAFIPEKERKEAVRKSSQRVFQALRIDVNNEF 274

Query: 226 EELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF 285
           E L   L      LK GG + +++FHS EDRLVKK F     + +              +
Sbjct: 275 EVLYDFLDKLPGVLKPGGKVAILTFHSGEDRLVKKSFKQWKKEGL--------------Y 320

Query: 286 QSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319
             I K V+ P++E+   N R++  K+R  +R  E
Sbjct: 321 SEIAKDVIRPSKEECFRNSRAKCTKMRWAIRAEE 354


>gi|321460668|gb|EFX71708.1| hypothetical protein DAPPUDRAFT_111399 [Daphnia pulex]
          Length = 322

 Score =  293 bits (750), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 117/322 (36%), Positives = 168/322 (52%), Gaps = 27/322 (8%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQETMRDY 81
           + ++V+ +  P   +  LD TFGAGG++R          V  LDRDP A     +   + 
Sbjct: 1   MHKEVLEMFQPQQNQKFLDLTFGAGGHTRKLLSSARNITVYTLDRDPLAYELAIQLASET 60

Query: 82  -KEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
              Q       FS L   + +       DG++ D G SSMQ D  +RGFS  K+GPLDMR
Sbjct: 61  TNGQVVPLLGKFSDLPQLLSNPETCNFFDGILVDCGCSSMQFDTRERGFSLSKNGPLDMR 120

Query: 137 MSCSGI----SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQTTQDL 191
           M  + +    SA D++   +   L+R+L + GEEKQA +IA AI++ R      QTT +L
Sbjct: 121 MDQNRLENQPSAKDILANIDEDSLSRVLKVYGEEKQAKKIARAIIEARYLFKSLQTTHEL 180

Query: 192 SSLIQKTVYFSKNNRI-----HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           + LI+ T   S          H AT++FQALRI VN+E+ EL   +R A + LK GG L+
Sbjct: 181 AQLIESTCGLSTRTDKLQRPSHVATKTFQALRILVNDELNELEFAVRYAHRTLKIGGKLV 240

Query: 247 VVSFHSLEDRLVKKFFAS----------RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296
            ++FHSLEDR+VK+                     +  ++P       ++SI K V+VP+
Sbjct: 241 TITFHSLEDRIVKEHLHGFDYSAKSEEIYKNYGRQLDPLLPLADMERKWESINKHVLVPS 300

Query: 297 QEDVAFNRRSRSAKLRAGMRTV 318
            E+V  N RSRSAKLRA ++  
Sbjct: 301 DEEVNGNPRSRSAKLRAAIKIR 322


>gi|203287765|ref|YP_002222780.1| S-adenosyl-methyltransferase [Borrelia recurrentis A1]
 gi|263445859|sp|B5RRC5|RSMH_BORRA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|201084985|gb|ACH94559.1| S-adenosyl-methyltransferase [Borrelia recurrentis A1]
          Length = 297

 Score =  292 bits (748), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 103/308 (33%), Positives = 164/308 (53%), Gaps = 24/308 (7%)

Query: 20  HVPVLLEKVIALLN---PAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCG 74
           H+PVLLE VI L+       G V +D T G GG+S++      N  VI ++RD   ++  
Sbjct: 6   HIPVLLEDVINLVETIYLDDGFVFVDCTLGEGGHSKAVLSKYQNINVIGIERDDVVLNRA 65

Query: 75  QETMRDYKEQFSLFQATFSQLQ-DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           +E++ ++ ++ S     F      Y   +  + ++ DLG+S        RGFSF +   L
Sbjct: 66  KESLVEFSKRISYSNTWFDDFFCKYSLHRRFNFILADLGISMFHYKVAGRGFSFLEDEKL 125

Query: 134 DMRMSCS--GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           DMR+  S  GISA D+VN  + + L  ++  LG E  + RI  AI++ R+    QT+++L
Sbjct: 126 DMRLFPSDGGISAYDIVNTFDKEMLENLIYELGGEYYSRRIVKAILEYRKINKIQTSREL 185

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             +I K     K  +I+PAT++FQALRI+VN+E++ L + L      L   G+L +++FH
Sbjct: 186 QRIICKAYPNVKF-KINPATKTFQALRIYVNDELDRLKRSLPLWIANLSKNGILAIITFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLED++VK+FF   +                     +TKK +  + ++  +N  SRSAKL
Sbjct: 245 SLEDKIVKEFFKGLTKDKYC---------------ILTKKPITSSFKEKQYNNASRSAKL 289

Query: 312 RAGMRTVE 319
           RA  +  E
Sbjct: 290 RAVKKLYE 297


>gi|219684724|ref|ZP_03539667.1| S-adenosyl-methyltransferase MraW [Borrelia garinii PBr]
 gi|219672086|gb|EED29140.1| S-adenosyl-methyltransferase MraW [Borrelia garinii PBr]
          Length = 296

 Score =  292 bits (748), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 98/306 (32%), Positives = 169/306 (55%), Gaps = 24/306 (7%)

Query: 20  HVPVLLEKV---IALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           H PVLL+ +   I  L      + +D+T G G ++++  +     +++ ++RDP  +   
Sbjct: 7   HFPVLLDAICKLIEDLPVKSDLIYIDSTLGEGAHAKAILEKYDFLSLVGIERDPQILERA 66

Query: 75  QETMRDYKEQFSLFQATFSQLQ-DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           ++ +  +KE+ + F   F     +Y  +   + ++ DLG+S        +GFSF +  PL
Sbjct: 67  KQFLLVFKERITYFNDWFDNFFVNYPLNVKANFILVDLGISMFHYKGSKKGFSFLEDEPL 126

Query: 134 DMRMSCSGISAS--DVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           DMR+  S  S S  ++VN  +  DL  ++  L  E  + RI+ AIV+ R+    +TT++L
Sbjct: 127 DMRLCSSSCSISAAEIVNTFSKYDLESLIYDLSNEHYSRRISKAIVEYRKIKKIETTKEL 186

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            ++I K   FSK  +I+PAT++FQALRI+VN+E+  L + L    + L   G+L +++FH
Sbjct: 187 QAVINKVYPFSK-AKINPATKTFQALRIYVNDELARLKRSLPLWIENLAKDGILAIITFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           S+EDR+VK FF S S                 ++  I+KK ++P+ +++  N+ SRSAKL
Sbjct: 246 SIEDRIVKDFFRSLSCD---------------LYAKISKKPIIPSFDEIKKNKPSRSAKL 290

Query: 312 RAGMRT 317
           RA  + 
Sbjct: 291 RALKKI 296


>gi|291523548|emb|CBK81841.1| S-adenosyl-methyltransferase MraW [Coprococcus catus GD/7]
          Length = 352

 Score =  291 bits (746), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 100/331 (30%), Positives = 162/331 (48%), Gaps = 31/331 (9%)

Query: 3   SKSCKTMSSAIHH---TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG- 58
            K  +T+   I       G H+ +++++++  L   PG+  LDAT G GG++ +  +   
Sbjct: 35  EKYGETVEKVIRKGGTPAGMHISIMVQEILDFLQIQPGQRGLDATLGYGGHTSAMLRCLN 94

Query: 59  --SNVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLG 112
              ++ ALD D   ++  +E +R+     +  ++ +  F+ + +     G  D ++ DLG
Sbjct: 95  GEGHLTALDVDAIEMAKTEERLRNQGFGPDILTVRKINFANIDEVAEKDGKFDFILADLG 154

Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASR 171
           VSSMQID  DRGFS++  GPLD+R+  + G  AS+ +      +   +L    +E  A+ 
Sbjct: 155 VSSMQIDNPDRGFSYKYDGPLDLRLDQTKGEPASERLKHVTRDEFEGMLIENSDEPYAAE 214

Query: 172 IAHAIVKR-RQSAPFQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEI 225
           IA  +++  ++  P  TT  L  LI+K +        K        R+FQALRI VN+E 
Sbjct: 215 IASVVMQELKKGHPVDTTSKLRELIEKALVRVPAADRKEAVKKSCARTFQALRIDVNSEF 274

Query: 226 EELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF 285
           E L   L+     L  GG + V++FHS EDRLVKK F                N    ++
Sbjct: 275 EVLEAFLQKLPDVLNPGGRVAVLTFHSGEDRLVKKSFKE--------------NVKAGIY 320

Query: 286 QSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
               K V+ P+ E+   N R+ S KLR  +R
Sbjct: 321 SEAAKDVIRPSAEECRCNSRAHSTKLRWAVR 351


>gi|203284227|ref|YP_002221967.1| S-adenosyl-methyltransferase [Borrelia duttonii Ly]
 gi|263445883|sp|B5RLD2|RSMH_BORDL RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|201083670|gb|ACH93261.1| S-adenosyl-methyltransferase [Borrelia duttonii Ly]
          Length = 297

 Score =  291 bits (746), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 104/308 (33%), Positives = 165/308 (53%), Gaps = 24/308 (7%)

Query: 20  HVPVLLEKVIALLN---PAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCG 74
           H+PVLLE VI L+       G V +D T G GG+S++      N  VI ++RD   ++  
Sbjct: 6   HIPVLLEDVINLVETIYLDDGFVFVDCTLGEGGHSKAVLSKYQNINVIGIERDDVVLNRA 65

Query: 75  QETMRDYKEQFSLFQATFSQLQ-DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           +E++ ++ ++ S     F      Y   +  + ++ DLG+S      G RGFSF +   L
Sbjct: 66  KESLVEFSKRISYSNTWFDDFFCKYSLHRRFNFILADLGISMFHYKVGGRGFSFLEDEKL 125

Query: 134 DMRMSCS--GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           DMR+  S  GISA D+VN  + + L  ++  LG E  + RI  AI++ R+    QT+++L
Sbjct: 126 DMRLFPSDGGISAYDIVNTFDKEMLENLIYELGGEYYSRRIVKAILEYRKINKIQTSREL 185

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             +I K     K  +I+PAT++FQALRI+VN+E++ L + L      L   G+L +++FH
Sbjct: 186 QRIICKAYPNVKF-KINPATKTFQALRIYVNDELDRLKRSLPLWIANLSKNGILAIITFH 244

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLED++VK+FF   +                     +TKK +  + ++  +N  SRSAKL
Sbjct: 245 SLEDKIVKEFFKGLTKDQYC---------------ILTKKPITSSFKEKQYNNASRSAKL 289

Query: 312 RAGMRTVE 319
           RA  +  E
Sbjct: 290 RAVKKLYE 297


>gi|219685637|ref|ZP_03540452.1| S-adenosyl-methyltransferase MraW [Borrelia garinii Far04]
 gi|219672825|gb|EED29849.1| S-adenosyl-methyltransferase MraW [Borrelia garinii Far04]
          Length = 296

 Score =  291 bits (746), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 98/306 (32%), Positives = 169/306 (55%), Gaps = 24/306 (7%)

Query: 20  HVPVLLEKV---IALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           H PVLL+ +   I  L      + +D+T G G ++++  +     +++ ++RDP  +   
Sbjct: 7   HFPVLLDAICKLIEDLPVKSDLIYIDSTLGEGAHAKAILEKYDFLSLVGIERDPQILERA 66

Query: 75  QETMRDYKEQFSLFQATFSQLQ-DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           ++ +  +KE+ + F   F     +Y  +   + ++ DLG+S        +GFSF +  PL
Sbjct: 67  KQFLLVFKERITYFNDWFDNFFVNYPLNVKANFILVDLGISMFHYKGSKKGFSFLEDEPL 126

Query: 134 DMRMSCSGISAS--DVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           DMR+  S  S S  ++VN  +  DL  ++  L  E  + RI+ AIV+ R+    +TT++L
Sbjct: 127 DMRLCSSSCSISAAEIVNTFSKYDLESLIYDLSNEHYSRRISKAIVEYRKIKKIETTKEL 186

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            ++I K   FSK  +I+PAT++FQALRI+VN+E+  L + L    + L   G+L +++FH
Sbjct: 187 QAVINKVYPFSK-AKINPATKTFQALRIYVNDELARLKRSLPLWIENLAKDGILAIITFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           S+EDR+VK FF S S                 ++  I+KK ++P+ +++  N+ SRSAKL
Sbjct: 246 SIEDRIVKDFFRSLSCD---------------LYARISKKPIIPSFDEIKKNKPSRSAKL 290

Query: 312 RAGMRT 317
           RA  + 
Sbjct: 291 RALKKI 296


>gi|307128732|ref|YP_003880762.1| S-adenosyl-methyltransferase MraW [Candidatus Sulcia muelleri CARI]
 gi|306483194|gb|ADM90064.1| S-adenosyl-methyltransferase MraW [Candidatus Sulcia muelleri CARI]
          Length = 306

 Score =  290 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 95/304 (31%), Positives = 159/304 (52%), Gaps = 15/304 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
           H PVLL++ + LL      + +D TFG GG+S S  K       +IA D+D +++     
Sbjct: 9   HNPVLLDETLTLLVKEIDGIYIDTTFGGGGHSFSLLKKLNNKGRLIAFDQDIYSIKKNNI 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
                  +F+L +  +  ++  +       V G++ DLG+SS QI+   RGFS + +  L
Sbjct: 69  I----DTRFNLVKTNYIFIKKILKRYNLNKVSGILADLGISSHQINTPKRGFSIRSNSIL 124

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM     I+A  ++N  +  +L  I  I G+ K +  +A  I+K+R+    + T DL 
Sbjct: 125 DMRMDTFKKINAKYIINNYSYNELYNIFKIYGDRKNSKFLAKLIIKQRKKKIIKYTFDLI 184

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           ++++   +F K       ++ FQ+LRI VN+EI  L   L ++   LK GG + V+S+HS
Sbjct: 185 NILK--FFFKKKIENKFLSKIFQSLRIEVNDEINALKYLLNNSLSILKPGGRIAVISYHS 242

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           +EDR+VKKF  + +   +       +N  P +   +  K +  ++E++  N RSRSA LR
Sbjct: 243 IEDRIVKKFLKTGNFNGVVSYDGYGNNLSPLI--LLKPKRIFSSKEEIKKNNRSRSAILR 300

Query: 313 AGMR 316
              +
Sbjct: 301 IAEK 304


>gi|189219430|ref|YP_001940071.1| SAM methyltransferase involved MraW [Methylacidiphilum infernorum
           V4]
 gi|263456445|sp|B3DVX0|RSMH_METI4 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|189186288|gb|ACD83473.1| SAM methyltransferase involved MraW [Methylacidiphilum infernorum
           V4]
          Length = 316

 Score =  290 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 100/308 (32%), Positives = 161/308 (52%), Gaps = 10/308 (3%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCG 74
             +  H+PV+L++ +   +P   +  +D TFG GG++ +    G  V+ALD D  A    
Sbjct: 6   EEVESHIPVMLKEFLKHCSPKRDEQWIDGTFGYGGHTTALLDKGCKVLALDTDEDAQKRA 65

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK-S 130
            E +++  E+F  F+  FS++ +     G   VDG++ DLGVS  Q+    RGFSFQ   
Sbjct: 66  -EILKEKGEEFYFFRKNFSEMAEACFQMGWTAVDGILLDLGVSLGQLKDPKRGFSFQFPD 124

Query: 131 GPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM  +   + + ++N  + + L ++  +    K++ ++A+ IV+ R + P +   
Sbjct: 125 APLDMRMDRTRERTGAALLNTLSKEQLVQLFSVACNMKESQKLANEIVRFRSTGPIKKVG 184

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           D   ++ +       ++I+ ATR F ALRI VN E+E L + LR   K LK GG + V+S
Sbjct: 185 DFLEIVTRARLLK--SKINAATRPFLALRIAVNEELEHLEKALREGTKLLKGGGRIAVIS 242

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHS EDR+VK+F  S              N     F  + +  V+ + E+   N RSRSA
Sbjct: 243 FHSAEDRIVKEFMRSHCLPKKGEGVAEEENHREMFFYKVER--VLVSLEERKNNPRSRSA 300

Query: 310 KLRAGMRT 317
           +LR   + 
Sbjct: 301 RLRIAWKI 308


>gi|72383375|ref|YP_292730.1| S-adenosyl-methyltransferase MraW [Prochlorococcus marinus str.
           NATL2A]
 gi|88909209|sp|Q46HK1|RSMH_PROMT RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|72003225|gb|AAZ59027.1| bacterial methyltransferase [Prochlorococcus marinus str. NATL2A]
          Length = 304

 Score =  290 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 106/310 (34%), Positives = 166/310 (53%), Gaps = 30/310 (9%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPG-----KVILDATFGAGGYSRSFCKMGS--NVIALDR 66
             +  +H+PV+ +++I  L   P       +I+DAT G GG+S    +      +I LD+
Sbjct: 8   SSSNFNHIPVMGKEIIRSLKELPSELTKKGLIIDATIGGGGHSAQILENFPGIKIIGLDQ 67

Query: 67  DPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126
           DP A+    + +  +  +  +    F+    +  ++ +  V+ DLGVSS Q+D   RGFS
Sbjct: 68  DPMAIKAASKKLIKFGTRIEIISTNFADFSHH--EQAI-CVLADLGVSSHQLDEPSRGFS 124

Query: 127 FQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAP 184
           F+ +GP+DMRM+   G SA++++   + ++L  ++  LGEEK++ RIA  I     ++ P
Sbjct: 125 FRLNGPIDMRMNPKEGSSAAELIETLSEQNLADLIYELGEEKRSRRIARKIKNDLAENGP 184

Query: 185 FQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
           +  TQDLS  I        +  RIHP+TR+FQALRI VNNE+  L   L  A   L   G
Sbjct: 185 YSGTQDLSYAIAGCFPPKQRYGRIHPSTRTFQALRIAVNNELGSLESLLLKAPNWLLENG 244

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
           L +V+SFHSLEDR VK  F + +                   + ++KK +  + E++  N
Sbjct: 245 LFMVMSFHSLEDRRVKSSFKTDN-----------------RLKVLSKKPIRASPEEIELN 287

Query: 304 RRSRSAKLRA 313
            RS+SAKLR 
Sbjct: 288 PRSKSAKLRI 297


>gi|242060440|ref|XP_002451509.1| hypothetical protein SORBIDRAFT_04g003030 [Sorghum bicolor]
 gi|241931340|gb|EES04485.1| hypothetical protein SORBIDRAFT_04g003030 [Sorghum bicolor]
          Length = 445

 Score =  290 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 120/351 (34%), Positives = 166/351 (47%), Gaps = 52/351 (14%)

Query: 19  DHVPVLLEKVIALLN-PAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCG 74
            HVPVLL +V+A    P P +  +D T GA G+S +  +    +   I +D DP A+  G
Sbjct: 95  HHVPVLLGEVLAAFRRPRPLRSFVDCTLGAAGHSLAMMEAHPELELYIGMDVDPSALEIG 154

Query: 75  -----------------------QETMRDYK--EQFSLFQATFSQLQDYVP--DKGVDGV 107
                                  QET+R Y   + F   +     + + +     GVDG+
Sbjct: 155 RGHIETFLAGREREANGREEDVLQETLRAYTHVKNFKYIKQVLGSVDESLAVGSSGVDGI 214

Query: 108 VFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEE 166
           + DLG+SSMQ++  +RGFS  + GPLDMRM     + A D++N     +L RIL   GEE
Sbjct: 215 LIDLGMSSMQVNRSNRGFSVLQDGPLDMRMDPKATLRAEDILNSWPEIELGRILREYGEE 274

Query: 167 KQASRIAHAIVKRRQSAPFQTTQDLSSLIQK--TVYFSKNNRIHPATRSFQALRIFVNNE 224
                +   IVK R +    +T DL  LIQ+  ++   +   I  ATR FQALRI VN+E
Sbjct: 275 SNWQSVQKQIVKARATGGLHSTGDLVKLIQRMCSISSGRQGWIKTATRVFQALRIAVNDE 334

Query: 225 IEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH---------- 274
           +  L   L S    L  GG L V+SFHSLEDR+VKK F        A             
Sbjct: 335 LRVLEDSLHSCFDCLATGGRLAVISFHSLEDRIVKKTFLELIHGGEADDEEDDKDDLALT 394

Query: 275 MIPSNAHPAVFQ--------SITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
            I +   P   Q         +TK+ + P+QE+   N+R RSAKLR   + 
Sbjct: 395 DIVNEDEPWFGQRVQGRNGTVLTKRPITPSQEEEKLNQRCRSAKLRVIQKN 445


>gi|153006714|ref|YP_001381039.1| S-adenosyl-methyltransferase MraW [Anaeromyxobacter sp. Fw109-5]
 gi|263446704|sp|A7HH59|RSMH_ANADF RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|152030287|gb|ABS28055.1| S-adenosyl-methyltransferase MraW [Anaeromyxobacter sp. Fw109-5]
          Length = 310

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 122/304 (40%), Positives = 172/304 (56%), Gaps = 5/304 (1%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H  VL  +V+ +L PAPGK++LD T G GG+S    + G+ VI LD+DP A++     + 
Sbjct: 7   HASVLAREVVEVLRPAPGKLLLDGTLGGGGHSELLLERGARVIGLDKDPRALAAATARLA 66

Query: 80  DYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
            + E F   +A F   ++ +      GVDG + DLGVSS Q+D  DRGFSF + GPLDMR
Sbjct: 67  RWGEAFRAVRADFRDAKNVLSALGLTGVDGTLVDLGVSSPQLDQADRGFSFSRPGPLDMR 126

Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
           M   G    D++ + + ++L RIL   GEE  A  IA A+ +  +S     T  L+ ++ 
Sbjct: 127 MGDEGERLEDLLRRIDERELARILREYGEEPFARPIARAVKRAVESDEALDTARLADIVA 186

Query: 197 KTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           K +       RIHPATR+FQALRI VN+E+  LA  L      L  GG    +SFHSLED
Sbjct: 187 KAIPRKAWPRRIHPATRTFQALRIAVNDELGALAAWLDGLPATLNVGGRAAAISFHSLED 246

Query: 256 RLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           R+VK+ F + +          + +    A F +IT+K VV ++ +VA N R+RSAKLRA 
Sbjct: 247 RMVKERFRALTQACTCPPDLPVCACGARASFAAITRKAVVASEAEVAENPRARSAKLRAV 306

Query: 315 MRTV 318
            +  
Sbjct: 307 EKIR 310


>gi|183221148|ref|YP_001839144.1| S-adenosyl-methyltransferase MraW [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189911239|ref|YP_001962794.1| S-adenosylmethionine-dependentmethyltransferase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|263456288|sp|B0S989|RSMH_LEPBA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|263456310|sp|B0SRS3|RSMH_LEPBP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|167775915|gb|ABZ94216.1| S-adenosylmethionine-dependentmethyltransferase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167779570|gb|ABZ97868.1| S-adenosyl-methyltransferase MraW [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 314

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 113/315 (35%), Positives = 170/315 (53%), Gaps = 31/315 (9%)

Query: 19  DHVPVLLEKVIALL----NPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVS 72
            H+PVL  +VI+LL    NP P +  LD T G GG+S+   K      +I +DRD   + 
Sbjct: 5   PHIPVLPSEVISLLQQTKNPNP-QWFLDGTAGEGGHSKLILKTFPEAKLILIDRDAVMLE 63

Query: 73  CGQ-ETMRDYK--EQFSLFQATFSQLQ-DYVPDKG---VDGVVFDLGVSSMQIDCGDRGF 125
             + E +++    ++   FQ  FS++  + + + G   +DG + DLGVS        RGF
Sbjct: 64  RAKKEILKEIGSLDRVHAFQMNFSEVDSELLQEVGCPSLDGALVDLGVSLFHFLHSGRGF 123

Query: 126 SFQKSGPLDMRM--SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           +F+   PLDMR+  +  G +A+DVVN ++V  L ++    GEE+ A +IA+ IV+ R   
Sbjct: 124 TFKNDEPLDMRLEANIGGKTAADVVNYSSVLHLKKVFWEYGEERWALKIANNIVQTRHKK 183

Query: 184 PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
            F T  DL  L++ ++         HPATR FQALRI VN E+    +G+R+  + L  G
Sbjct: 184 KFGTNTDLVKLVEASIPRKFWPKESHPATRIFQALRIEVNEELVHAEKGIRALAQCLGIG 243

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
           G+L  +SFHSLEDR+VK  F                      F+ +TKK ++P++ ++  
Sbjct: 244 GVLTCISFHSLEDRIVKWTFRDLKDNGP--------------FEILTKKPILPSETEIKE 289

Query: 303 NRRSRSAKLRAGMRT 317
           NR SRSAKLR  M+ 
Sbjct: 290 NRASRSAKLRGLMKI 304


>gi|312601353|gb|ADQ90608.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Mycoplasma hyopneumoniae 168]
          Length = 291

 Score =  290 bits (742), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 99/295 (33%), Positives = 149/295 (50%), Gaps = 16/295 (5%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDY 81
           +LE++I  L   P    +D T G GG+S +  +      ++  D+D  A+   +  +   
Sbjct: 1   MLEELILALEINPKGFYVDLTLGRGGHSLAILEKISNGKLVVFDKDQDALDQTRPKLLAL 60

Query: 82  KEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138
           K+   +  + FS+   Y+ + G   VDG + DLGVSS QID  +RGFS+ K G LDMRM 
Sbjct: 61  KQNIEIIWSDFSRFDFYLENLGIQFVDGFIIDLGVSSPQIDDPERGFSYSKDGNLDMRMD 120

Query: 139 CS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK 197
            S  +SA  V+N+   + L  I    G+   A  IA AI+  R   P +TT +L +L++K
Sbjct: 121 KSQKLSAFIVLNEYPYEKLVEIFFKYGQIPYAREIARAIINSR---PLKTTFELVNLVKK 177

Query: 198 TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRL 257
            +      + +     FQA+RI VNNE++ L + L    K LK G  + +++FHSLEDR+
Sbjct: 178 VIPALVLVKKNFIKNVFQAVRIEVNNELDSLQKLLEKLPKFLKQGSKVAIITFHSLEDRI 237

Query: 258 VKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           VKK F     K                    + KV  P   ++  N R++SAKLR
Sbjct: 238 VKKAFLDLIRKD-------KLEFFQKGLPKFSMKVFRPKANELKSNPRAKSAKLR 285


>gi|325067114|ref|ZP_08125787.1| S-adenosyl-methyltransferase MraW [Actinomyces oris K20]
          Length = 319

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 112/311 (36%), Positives = 171/311 (54%), Gaps = 24/311 (7%)

Query: 11  SAIHHTIGDHVPVLLEKVIALLNPAPGK-------------VILDATFGAGGYSRSFCKM 57
           +     +G H PVLLE+ + LL PA                V++D T G GG++ +  + 
Sbjct: 8   ATAADAVGRHEPVLLERCLDLLAPAIEGAVSSTSTTAPARPVMIDCTLGMGGHTEAALER 67

Query: 58  GS--NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV------DGVVF 109
            +   V+ +DRDP A++     +  + ++F   QAT+  +     +  V      D V+ 
Sbjct: 68  FTTLKVVGIDRDPEAIALASARLARFGDRFIAVQATYDAVGRVAREHSVRAEGTVDAVLM 127

Query: 110 DLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQ 168
           DLGVSS+Q+D   RGFS+ ++ PLDMRM  S G++A D++  A+  +LTRIL   GEE+ 
Sbjct: 128 DLGVSSLQLDEASRGFSYARTAPLDMRMDQSSGMTAQDLLESADAAELTRILRTYGEERF 187

Query: 169 ASRIAHAIVKRRQS-APFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIE 226
           ASRIA AIV+RR+S  P  +TQDL+ L++++V  + + N  HPA R+FQALRI VN E++
Sbjct: 188 ASRIAAAIVRRRESGQPVTSTQDLAELVRQSVPAAARRNGGHPAKRTFQALRIAVNAELD 247

Query: 227 ELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ 286
            L + +  A  +L+ GG L+V S+ SLEDR+VK+  A  +         +   A     +
Sbjct: 248 VLERAVPRALNSLRVGGRLVVESYQSLEDRIVKRALAHGATSRAPQDLPVVPEADLPYLE 307

Query: 287 SITKKVVVPTQ 297
            IT        
Sbjct: 308 LITNGAEKADA 318


>gi|51598567|ref|YP_072755.1| hypothetical protein BG0310 [Borrelia garinii PBi]
 gi|108868281|sp|Q661V8|RSMH_BORGA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|51573138|gb|AAU07163.1| conserved hypothetical protein [Borrelia garinii PBi]
          Length = 296

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 98/306 (32%), Positives = 167/306 (54%), Gaps = 24/306 (7%)

Query: 20  HVPVLLEKV---IALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           H PVLL+ +   I  L      + +D+T G G ++++  +     +++ ++RDP  +   
Sbjct: 7   HFPVLLDAICKLIEDLPVKSDLIYIDSTLGEGAHAKAILEKYDFLSLVGIERDPQILERA 66

Query: 75  QETMRDYKEQFSLFQATFSQLQ-DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           ++ +  +K + + F   F     +Y  +   + ++ DLG+S        +GFSF +  PL
Sbjct: 67  KQFLFAFKGRITYFNDWFDNFFVNYPLNAKANFILVDLGISMFHYKGSKKGFSFLEDEPL 126

Query: 134 DMRMSCSGISAS--DVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           DMR+  S  S S  D+VN  +  DL  ++  L  E  + RI+ AIV+ R+    +TT++L
Sbjct: 127 DMRLCSSSCSISAADIVNTFSKYDLESLIYDLSNEHYSRRISKAIVEYRKIKRIETTKEL 186

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            ++I K   FSK  +I+PAT++FQALRI VN+E+  L + L    + L   G+L +++FH
Sbjct: 187 QAVINKVYPFSK-AKINPATKTFQALRICVNDELARLKRSLPLWIENLAKDGILAIITFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           S+EDR+VK FF S S                 ++  I+KK ++P+ +++  N+ SRSAKL
Sbjct: 246 SIEDRIVKDFFRSLSCD---------------LYAKISKKPIIPSFDEIKKNKPSRSAKL 290

Query: 312 RAGMRT 317
           RA  + 
Sbjct: 291 RALKKI 296


>gi|257458736|ref|ZP_05623859.1| S-adenosyl-methyltransferase MraW [Campylobacter gracilis RM3268]
 gi|257443724|gb|EEV18844.1| S-adenosyl-methyltransferase MraW [Campylobacter gracilis RM3268]
          Length = 311

 Score =  289 bits (741), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 100/310 (32%), Positives = 160/310 (51%), Gaps = 15/310 (4%)

Query: 18  GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQ 75
             H+PVL  + IA  +      ++D T G GG+S        +  +IA DRD  A+   +
Sbjct: 3   APHIPVLFSQTIAAFSQLEDGYVIDCTLGYGGHSEGILTANPHLKLIACDRDAEAIEFSR 62

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E +  +K++  + +A FS++   +P++    V G++ D+GVSS+Q+D   RGFS +    
Sbjct: 63  ERLSKFKDRIEIHKAKFSEILKILPEQKLRAVRGILADIGVSSLQLDKNCRGFSTKSDA- 121

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  S  + A+ VVN+ +  DL RI    GE   A+ IA  I   R +AP  + + L
Sbjct: 122 LDMRMDESAALDAAYVVNRYSQADLARIFREYGELTNANAIAAKIATARTNAPLTSAKAL 181

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAE----KALKAGGLLIV 247
           ++LI       K   I  AT +FQA+RI VN+E+ EL + L   E     ++     + +
Sbjct: 182 ANLI--GTKPVKGRSISTATLAFQAIRIEVNDELGELKRLLTLIEQKSRDSILTNATVAI 239

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRR 305
           +SFHSLEDR+VK+ F +     +              ++ + +TK  +    +++A N R
Sbjct: 240 ISFHSLEDRIVKEQFKAWERDCVCPSEFMRCECGGDHSLGKILTKSPLTADAQELAQNSR 299

Query: 306 SRSAKLRAGM 315
           + SAKLR   
Sbjct: 300 AASAKLRIFR 309


>gi|327540391|gb|EGF26977.1| S-adenosyl-methyltransferase MraW [Rhodopirellula baltica WH47]
          Length = 325

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 104/317 (32%), Positives = 163/317 (51%), Gaps = 35/317 (11%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---------SNVIALDRDPF 69
           +HV V+  +++  +       I+D T+G GG++R   ++            VIA+DRDP 
Sbjct: 27  EHVSVMPNEIVQWVREINPTTIIDGTYGGGGHTRLLAEVLADAGADSDTPRVIAIDRDPA 86

Query: 70  AVSCGQE--TMRDYKEQFSLFQATFS---QLQDYVPDKGVDGVVFDLGVSSMQIDCGDRG 124
            V   ++   ++D   +  LF  ++    +  D +     D +V DLG+SS Q+   +RG
Sbjct: 87  VVRRDEQKSWIKD-DPRIELFLGSYESSPKALDALDLTHADALVLDLGLSSDQLADRNRG 145

Query: 125 FSFQ-KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV-KRRQ 181
           F+F      LD+R    +G+ A   + Q + K++   +   GEE+ + RIA  I  + R+
Sbjct: 146 FTFTIDDAELDLRFDPENGVPAYRWLQQHSEKEIADAIYQFGEERFSRRIAKQIFLRARE 205

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
             P     +L  + ++ V  S+N+ IHPATR+FQALRI VN+E+  L + L+SA   +  
Sbjct: 206 RNPVTKVGELVEICRRCVPRSRNHDIHPATRTFQALRIAVNDELGGLTRTLQSAPDWIAP 265

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           GG + V+SFHSLEDR+VK  F                      ++ +TKK + PT E+V 
Sbjct: 266 GGRVAVISFHSLEDRIVKNAFRED-----------------HRWEILTKKPLRPTDEEVQ 308

Query: 302 FNRRSRSAKLRAGMRTV 318
            N RSRSAKLR   R  
Sbjct: 309 ANPRSRSAKLRVAKRVE 325


>gi|225388291|ref|ZP_03758015.1| hypothetical protein CLOSTASPAR_02026 [Clostridium asparagiforme
           DSM 15981]
 gi|225045638|gb|EEG55884.1| hypothetical protein CLOSTASPAR_02026 [Clostridium asparagiforme
           DSM 15981]
          Length = 350

 Score =  289 bits (740), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 106/331 (32%), Positives = 160/331 (48%), Gaps = 31/331 (9%)

Query: 3   SKSCKTMSSAIHH---TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG- 58
            K   T+S  I       G H+ + +++++  L   PG+  LDAT G GG++    K   
Sbjct: 32  EKYSDTVSKVIQKGSTPAGMHISICVKEILDFLQIQPGQNGLDATLGYGGHTLEMLKCLE 91

Query: 59  --SNVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLG 112
              ++ ALD DP      +  + D     E  ++    F+++     + G  D V+ DLG
Sbjct: 92  GKGHIHALDVDPIESEKTKARLADLGYGPEILTVRLQNFAEIDQVAAEAGRFDFVLADLG 151

Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASR 171
           VSSMQID  +RGF+F+  GPLD+RM+   GISA+  + +  +++LT +L    +E  A  
Sbjct: 152 VSSMQIDNPERGFTFKAEGPLDLRMNPERGISAAQRLKEITLEELTGMLTENADEPYAEE 211

Query: 172 IAHAIVKR-RQSAPFQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEI 225
           IA  +  R ++     TT  L  +I   + F      K      + R+FQALRI VNNE 
Sbjct: 212 IAREVTGRLKRGEEIATTTKLYQVIGDALAFLPEKDRKEAVKKSSQRTFQALRIDVNNEY 271

Query: 226 EELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF 285
           E L   L    + L  GG   +++FHS EDRLVKK F     +      +          
Sbjct: 272 EALYAFLEKLPEVLAPGGRAAILTFHSGEDRLVKKSFKQYKKEG-RYSDICEE------- 323

Query: 286 QSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
                 V+ P+QE+ A N R+RS K+R  +R
Sbjct: 324 ------VIRPSQEECARNSRARSTKMRWAVR 348


>gi|224531783|ref|ZP_03672415.1| S-adenosyl-methyltransferase MraW [Borrelia valaisiana VS116]
 gi|224511248|gb|EEF81654.1| S-adenosyl-methyltransferase MraW [Borrelia valaisiana VS116]
          Length = 296

 Score =  289 bits (740), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 98/305 (32%), Positives = 168/305 (55%), Gaps = 24/305 (7%)

Query: 20  HVPVLLEKV---IALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
           H PVLL+ +   I  L      + +D+T G G ++++  +     ++I ++RD   +   
Sbjct: 7   HFPVLLDAICKLIEDLPVKSDSIYIDSTLGEGTHAKAILEKYDFLSLIGIERDFQILQRA 66

Query: 75  QETMRDYKEQFSLFQATFSQL-QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           ++ +  ++++ + F   F     +Y  +   + ++ DLG+S        +GFSF +  PL
Sbjct: 67  KQFLLIFEDRITYFNDWFDNFFANYPLNAKANFILVDLGISMFHYKGSKKGFSFLEDEPL 126

Query: 134 DMRMSCSGISAS--DVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           DMR+  S  S S  ++VN  +  DL  ++  L  E  + RI+ AIV+ R+    QTT++L
Sbjct: 127 DMRLCSSSCSISAAEIVNTFSKYDLEELIYDLSNEHYSRRISKAIVEYRKIKKIQTTKEL 186

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            S+I K   FSK  +I+PAT++FQALRI+VN+E+  L + L    + L   G+L +++FH
Sbjct: 187 QSIINKVYPFSK-AKINPATKTFQALRIYVNDELTRLKRSLPLWVENLAKDGILAIITFH 245

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           S+EDR+VK FF S S                 ++  I+KK ++P+ +++  N+ SRSAKL
Sbjct: 246 SIEDRIVKDFFRSLSFD---------------LYAKISKKPIIPSFDEIKKNKPSRSAKL 290

Query: 312 RAGMR 316
           RA  +
Sbjct: 291 RAVKK 295


>gi|166033390|ref|ZP_02236219.1| hypothetical protein DORFOR_03116 [Dorea formicigenerans ATCC
           27755]
 gi|166027747|gb|EDR46504.1| hypothetical protein DORFOR_03116 [Dorea formicigenerans ATCC
           27755]
          Length = 358

 Score =  289 bits (739), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 93/330 (28%), Positives = 159/330 (48%), Gaps = 31/330 (9%)

Query: 3   SKSCKTMSSAI---HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-- 57
            K   T+   I       G H+ + +++++  L+  PG+  LDAT G GG++R   +   
Sbjct: 42  EKYGDTIEKVIGKGSTPAGMHISICVQEILDFLDIKPGQHGLDATLGYGGHTRKMLEKLE 101

Query: 58  -GSNVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLG 112
              ++  LD DP      ++ +RD     +  ++    F+ +     + G  D V+ DLG
Sbjct: 102 GHGHIYGLDVDPIESEKTKKRLRDLGYGEDILTVKLCNFADIDKVAEEHGKFDFVLADLG 161

Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASR 171
           VSSMQID  +RGF+++  GPLD+RM+   G SA+  +   + +++  +L    +E  A+ 
Sbjct: 162 VSSMQIDNPERGFTYKFDGPLDLRMNPQKGESAAQRLKSMDAEEIEGMLVENSDEPYAAE 221

Query: 172 IAHAIVKRRQSAP-FQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEI 225
           I   ++  R+     +TT +L   I++ + F      K        R+FQALRI VN E 
Sbjct: 222 ITEVLMNWRKHGKSPETTTELKEAIEEALTFLPEKEKKEAVKKSCQRTFQALRIDVNQEF 281

Query: 226 EELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF 285
           E L   L    + +  GG + +++FHS EDRLVK+ F                     ++
Sbjct: 282 EVLYAFLDKLPQVMNPGGRIAILTFHSGEDRLVKRAFKE--------------GKKAGIY 327

Query: 286 QSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
             I K V+ P+ ++ A N R++  K+R  +
Sbjct: 328 SEICKDVIRPSAQECARNPRAKCTKMRWAI 357


>gi|302669504|ref|YP_003829464.1| S-adenosyl-methyltransferase MraW family protein [Butyrivibrio
           proteoclasticus B316]
 gi|302393977|gb|ADL32882.1| S-adenosyl-methyltransferase MraW family [Butyrivibrio
           proteoclasticus B316]
          Length = 347

 Score =  289 bits (739), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 98/331 (29%), Positives = 155/331 (46%), Gaps = 31/331 (9%)

Query: 3   SKSCKTMSSAIHH---TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG- 58
            K   T++  I       G H+ +++++++ +L   PG+  LD T G GG++R   +   
Sbjct: 30  EKYADTVAHVISKGSTPAGMHISIMVKEILEVLKIQPGEQGLDCTLGYGGHTRKMLEQLT 89

Query: 59  --SNVIALDRDPFAVSCGQETMRD--YKEQ-FSLFQATFSQLQDYVPDKG-VDGVVFDLG 112
               +  LD DP   +   E +R+  + E  F      F+ +     + G  D V+ DLG
Sbjct: 90  GKGCIYGLDVDPIESAKTVERLRNAGFDENAFKFRLINFANIDKVAEEAGKFDFVLADLG 149

Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASR 171
           VSSMQID   RGFS++  GPLD+R+    G SA++ ++     +   +L    +E  A  
Sbjct: 150 VSSMQIDDPKRGFSYKIDGPLDLRLDPEHGESAAERLHNITRDEFVGMLVENSDEPYAEE 209

Query: 172 IAHAIVK-RRQSAPFQTTQDLSSLIQKTVYF-SKNNR----IHPATRSFQALRIFVNNEI 225
           IA  +    ++  P  TT  L S I+  ++   K  +         R FQALRI VN+E 
Sbjct: 210 IADKVFNLMKKGDPMDTTTALRSAIENALWKLPKEEKDQAIKKSCARVFQALRIDVNSEF 269

Query: 226 EELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF 285
           E L   L      L  G  + +++FHS EDRLVKK F                     +F
Sbjct: 270 EVLYSFLEKLPGILNPGARVAILTFHSGEDRLVKKAFKE--------------CKKAGLF 315

Query: 286 QSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
             I++ V+ P+ E+   N RS+S K+R  ++
Sbjct: 316 SEISEDVIRPSAEECRVNPRSKSTKMRWAIK 346


>gi|307211743|gb|EFN87738.1| Putative S-adenosyl-L-methionine-dependent methyltransferase
           CG14683 [Harpegnathos saltator]
          Length = 325

 Score =  289 bits (739), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 115/324 (35%), Positives = 172/324 (53%), Gaps = 30/324 (9%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQETMRDY 81
           + ++V++ + P+PGK  +D TFGAGG++    +   ++   ALDRD  A    Q+  + Y
Sbjct: 1   MAQEVLSYIEPSPGKTYIDMTFGAGGHATKLLEHSPDIKIFALDRDSVAHEYAQKLSQKY 60

Query: 82  KEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
             Q       FS+L   +    +     DG +FD G SSMQ D G RGFS  K GPLDMR
Sbjct: 61  PGQVIPLLGKFSELPQLLKQHNIGRNSIDGFLFDFGCSSMQFDIGIRGFSLSKDGPLDMR 120

Query: 137 MS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQTTQDL 191
           M         +A+DV+ +A  +DL RI+   G+EK+A +IA AI++ R      +TT++L
Sbjct: 121 MDGFRCSGQPTAADVLERATEEDLARIIKFYGQEKRAKKIARAIIEARYMFRKLETTREL 180

Query: 192 SSLIQKTVY--FSKNNRI---HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           + LI+ T+     K+N     H AT++FQALRIFVNNE+ E+   +  A   LK  G LI
Sbjct: 181 AELIESTLSDEIRKDNLGRFSHNATKTFQALRIFVNNELNEINYAMLLARIYLKVTGRLI 240

Query: 247 VVSFHSLEDRLVKKFFA-------------SRSGKVMAVRHMIPSNAHPAVFQSITKKVV 293
            +SFHSLED +VK+  +               +                  ++ + K V+
Sbjct: 241 TISFHSLEDTIVKRHISGNITDNVANTISLKYANPGKIFDANELEMLTQTPWKMMHKHVL 300

Query: 294 VPTQEDVAFNRRSRSAKLRAGMRT 317
           +PT E++  N R+RSAK RA ++ 
Sbjct: 301 LPTAEEIETNPRARSAKFRAILKV 324


>gi|297243796|ref|ZP_06927726.1| S-adenosylmethionine-dependent methyltransferase [Gardnerella
           vaginalis AMD]
 gi|296888217|gb|EFH26959.1| S-adenosylmethionine-dependent methyltransferase [Gardnerella
           vaginalis AMD]
          Length = 345

 Score =  289 bits (739), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 102/318 (32%), Positives = 163/318 (51%), Gaps = 11/318 (3%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIA 63
           M+  +      H PVLL+  + L+ P     G +++D T G  G++ +F K      +I 
Sbjct: 1   MTDVMKDITAIHAPVLLQDCVDLVTPSLQHKGAIVVDCTLGLAGHATAFLKAAPFATLIG 60

Query: 64  LDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQDYVPDKGVDGVVF---DLGVSSMQI 118
           +DRD  A+S   + MR      +F    A F ++ + + +  +DG+     DLG+SS+QI
Sbjct: 61  IDRDAEALSLATQRMRSEGLENRFIPAHAAFDEIDEVLRENRIDGIDAAFMDLGLSSLQI 120

Query: 119 DCGDRGFSFQKSGPLDMRMSCSGISASDVVNQ-ANVKDLTRILGILGEEKQASRIAHAIV 177
           D  DRGFS+     LDMRM  +  + +  +    + + LTRI    GEE+ AS IA  IV
Sbjct: 121 DETDRGFSYSHDTALDMRMDTTQATTAATILATYDSRGLTRIFREYGEERFASLIARRIV 180

Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
           + R + P  T+  L SL+   +  +     +PA R FQALRI VN E+++L+  L     
Sbjct: 181 EVRATEPIATSGQLVSLVDSVIPKAHRATGNPAKRVFQALRIEVNGELDKLSCTLPKIAL 240

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297
            L+  G L+V S+HSLED  VK+F        +     +  +     F+++T+  +  ++
Sbjct: 241 HLREHGRLVVESYHSLEDTAVKRFMNQGLTVDVPANMPVIPDDAQPFFKALTRGAMKASK 300

Query: 298 EDVAFNRRSRSAKLRAGM 315
           E++  N RS S +LRA  
Sbjct: 301 EEIVHNTRSSSVRLRAVE 318


>gi|160940252|ref|ZP_02087597.1| hypothetical protein CLOBOL_05141 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436832|gb|EDP14599.1| hypothetical protein CLOBOL_05141 [Clostridium bolteae ATCC
           BAA-613]
          Length = 367

 Score =  288 bits (737), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 96/331 (29%), Positives = 160/331 (48%), Gaps = 31/331 (9%)

Query: 3   SKSCKTMSSAIHH---TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG- 58
            K  +T++  I      +G H+P+++ +++  L   PG+  LDAT G GG++    +   
Sbjct: 45  EKYPETVAKVIQKGSTPVGMHIPIMVNEILEFLQIQPGQTGLDATLGYGGHTSRMLERLE 104

Query: 59  --SNVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLG 112
              ++ ALD D   +   ++ +       E  ++ +  F+ +     + G +D V+ DLG
Sbjct: 105 SKGHIYALDVDSIEMEKTRQRLEHMGYGPEILTIRKLNFANIDQIAGEFGPLDFVLADLG 164

Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASR 171
           VSSMQID   RGFSF+K GPLD+R+    G  AS+ +     ++LT +L    +E  A  
Sbjct: 165 VSSMQIDNPSRGFSFKKEGPLDLRLDPLKGEPASERLKGLTQEELTGMLMENSDEPYAEE 224

Query: 172 IAHAIV-KRRQSAPFQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEI 225
           IA  ++ + ++     TT  L  ++ + + F      K        R+FQALRI VN+E 
Sbjct: 225 IARTVMGEIKRGREVATTTRLYEMVDRALAFIPEEERKEAVKKSCQRTFQALRIDVNSEF 284

Query: 226 EELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF 285
           E L + L      LK GG   +++FHS EDR+VKK F                     ++
Sbjct: 285 EVLYEFLDKLPGVLKPGGRAAILTFHSGEDRIVKKSFKEM--------------YRAGLY 330

Query: 286 QSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
             +   V+ P+ E+   N R+ S K+R  ++
Sbjct: 331 SQVAGDVIRPSAEECRMNSRAHSTKMRWAIK 361


>gi|206602140|gb|EDZ38622.1| S-adenosyl-methyltransferase (MraW) [Leptospirillum sp. Group II
           '5-way CG']
          Length = 307

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 102/301 (33%), Positives = 158/301 (52%), Gaps = 21/301 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQ-ETM 78
           H+PV+ ++V+ +L+  PG+  +DAT G GG++R+  + G +VIA+DRDP A+   + E +
Sbjct: 17  HLPVMTKEVLEVLDVQPGQWYVDATLGQGGHARAILEAGGSVIAIDRDPKAIEKARLELL 76

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVD--GVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
             + E+  L     + + +++   GVD  GVV D G S  Q      G SF   GPLDMR
Sbjct: 77  PVFGERLRLTCMNHAGMGEFLSSMGVDVSGVVLDSGWSMAQASESGAGLSFDAEGPLDMR 136

Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT-QDLSSL 194
           M  +   +A D++   + ++L  I    GEE  A  I+ A+V+ R       T ++L++ 
Sbjct: 137 MDPTLQRTAMDILEHQSAEELAEIFSNFGEEPLAMPISRALVQSRSRGRLPRTPKELAAF 196

Query: 195 IQKTVYFS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +    Y    + +R HPATR F ALRI VN EI+ L +G+      L +G  L V++FHS
Sbjct: 197 VSGVYYRKGYRRSRRHPATRVFMALRIEVNGEIDSLVRGVSGVRSILVSGARLAVLTFHS 256

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
            EDR +K  F     +                 + +  K V+P + ++  N RSRSAKLR
Sbjct: 257 REDREIKHLFRGWVREGWG--------------RLLQSKPVLPGKAEIEQNPRSRSAKLR 302

Query: 313 A 313
            
Sbjct: 303 V 303


>gi|320102436|ref|YP_004178027.1| S-adenosyl-methyltransferase MraW [Isosphaera pallida ATCC 43644]
 gi|319749718|gb|ADV61478.1| S-adenosyl-methyltransferase MraW [Isosphaera pallida ATCC 43644]
          Length = 309

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 111/306 (36%), Positives = 161/306 (52%), Gaps = 32/306 (10%)

Query: 20  HVPVLLEKVIALLNPAPGK--VILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCG 74
           HVPVL + V+  L   PG   ++LD T GAGG++    +       VI LDRDP  +   
Sbjct: 27  HVPVLPQAVLEAL---PGGEVILLDGTVGAGGHAALLARRLTGRGRVIGLDRDPAMLELA 83

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSM---QIDCGDRGFSFQKSG 131
                 +     L  A++++ ++ +  +G+  +   L    +   Q+    RGFSFQ  G
Sbjct: 84  AR--ATHGLPVELVHASYTEAREVLAARGLTAIDGLLLDLGLSSDQLAWTHRGFSFQNDG 141

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMR   + G +A+D+V Q + + L  +    GEE+ + R+A  IV+ R+ AP  TTQ 
Sbjct: 142 PLDMRFDTTQGETAADLVAQLDAEQLADLFYRYGEERFSRRVARRIVEERRLAPILTTQR 201

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
           L++++++ +   +   I PATR FQALRI VN E+E L + L    + LK GG   V+SF
Sbjct: 202 LATIVRRAIP-GRRGPIDPATRVFQALRIAVNRELEHLEEFLGGMAELLKPGGRAAVISF 260

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           HSLEDR VK  F +                    +  ITKK +V T E+VA N R+RSAK
Sbjct: 261 HSLEDRKVKHAFRND-----------------PRWTVITKKPIVATPEEVAANPRARSAK 303

Query: 311 LRAGMR 316
           LR   R
Sbjct: 304 LRVAQR 309


>gi|283783556|ref|YP_003374310.1| S-adenosyl-methyltransferase MraW [Gardnerella vaginalis 409-05]
 gi|298252636|ref|ZP_06976430.1| S-adenosylmethionine-dependent methyltransferase [Gardnerella
           vaginalis 5-1]
 gi|283442079|gb|ADB14545.1| S-adenosyl-methyltransferase MraW [Gardnerella vaginalis 409-05]
 gi|297533000|gb|EFH71884.1| S-adenosylmethionine-dependent methyltransferase [Gardnerella
           vaginalis 5-1]
          Length = 345

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 102/318 (32%), Positives = 165/318 (51%), Gaps = 11/318 (3%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIA 63
           M+ A+      H PVLL+  + L+ P     G +++D T G  G++ +F K      +I 
Sbjct: 1   MTDAMKDITAIHAPVLLQDCVDLVTPSLQHKGAIVVDCTLGLAGHATAFLKAAPFATLIG 60

Query: 64  LDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQDYVPDKGVDGVVF---DLGVSSMQI 118
           +DRD  A+S   + MR      +F    A F ++ + + +  +D +     DLG+SS+QI
Sbjct: 61  IDRDSEALSLATQRMRSEGLENRFIPAHAAFDEIDEVLQENSIDRIDAAFMDLGLSSLQI 120

Query: 119 DCGDRGFSFQKSGPLDMRMSCSGISASDVVNQ-ANVKDLTRILGILGEEKQASRIAHAIV 177
           D  DRGFS+     LDMRM  +  + +  +    + ++LTRI    GEE+ AS IA  IV
Sbjct: 121 DETDRGFSYSHDTALDMRMDTTQATTAATILATYDSRELTRIFREYGEERFASPIARRIV 180

Query: 178 KRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
           + R + P  T+  L SL+   +  +     +PA R FQALRI VN E+++L++ L     
Sbjct: 181 EVRATEPIATSGQLVSLVDSVIPKAHRATGNPAKRVFQALRIEVNGELDKLSRTLPKIAL 240

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQ 297
            L+  G L+V S+HSLED  VK+F        +     +  +     F+++T+  +  ++
Sbjct: 241 HLREHGRLVVESYHSLEDTAVKRFMNQGLTVDVPANMPVIPDDAQPFFKALTRGAMKASK 300

Query: 298 EDVAFNRRSRSAKLRAGM 315
           E++  N RS S +LRA  
Sbjct: 301 EEIVHNTRSSSVRLRAVE 318


>gi|45657732|ref|YP_001818.1| S-adenosyl-methyltransferase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|88911699|sp|P62472|RSMH_LEPIC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|45600972|gb|AAS70455.1| S-adenosyl-methyltransferase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 334

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 111/330 (33%), Positives = 171/330 (51%), Gaps = 29/330 (8%)

Query: 3   SKSCKTMSSAIHHTIGD--HVPVLLEKVI----ALLNPAPGKVILDATFGAGGYSRSFCK 56
              C+T++   + T  +  H  V  ++++             + LD T G GG+S  F K
Sbjct: 2   ESPCRTITLEKNGTSLEPVHYSVQGKEILQIFKENFQKEDPVLFLDGTAGEGGHSFLFLK 61

Query: 57  MGS--NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL-QDYVPDKGVD----GVVF 109
                 +I  DRDP  +S     + D+ E+    Q  FS++ Q  +   G+D    G++ 
Sbjct: 62  EFPNSRIILCDRDPIMLSRALTRLSDFSERVVSIQTNFSEINQKLLTSYGIDQTPQGILL 121

Query: 110 DLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQ 168
           DLG+S+  +    RGFSF++S PLDMR++  SG SA +++N      L  I    GEE+ 
Sbjct: 122 DLGISTFHLFHSGRGFSFRESEPLDMRLNPNSGQSAEEILNIYPKDRLMNIFYTYGEERW 181

Query: 169 ASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEE 227
           + +IA  IV+ R+     TT +L++L+ K +         HPATR FQALRI VN E+  
Sbjct: 182 SKKIAEVIVETRKQNSISTTFELANLVSKIIPRKFWPPGRHPATRIFQALRIEVNQELAH 241

Query: 228 LAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS 287
           +  GL+     L+ GG++ V+SFHSLEDR+VK  F   + +                F+ 
Sbjct: 242 IENGLKLLLDLLRLGGVIQVISFHSLEDRIVKNSFRDYAKQ--------------NGFEL 287

Query: 288 ITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           +TKK ++P+QE++  N  SRSAKLR   +T
Sbjct: 288 LTKKPILPSQEEIDENPASRSAKLRILRKT 317


>gi|331091351|ref|ZP_08340191.1| ribosomal RNA small subunit methyltransferase H 1 [Lachnospiraceae
           bacterium 2_1_46FAA]
 gi|330404512|gb|EGG84056.1| ribosomal RNA small subunit methyltransferase H 1 [Lachnospiraceae
           bacterium 2_1_46FAA]
          Length = 349

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 94/315 (29%), Positives = 158/315 (50%), Gaps = 28/315 (8%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
            +G H+ + +++++  L   PG+  LDAT G GG++    K      ++ ALD D    +
Sbjct: 48  PVGMHISICVKEILDFLQIQPGQRGLDATLGYGGHTLEMLKCLKGEGHLYALDVDTVESA 107

Query: 73  CGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQ 128
             +E ++      E  ++    F  +     + G  D V+ DLGVSSMQID  +RGF+++
Sbjct: 108 KTKERLQKLGYGEEILTIKNINFRDIDKVCEEAGKFDFVLADLGVSSMQIDNPERGFTYK 167

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI-VKRRQSAPFQ 186
           K GPLD+R++   G+SA++ + +  +++L  +     +E  A  IA  I  K R+     
Sbjct: 168 KEGPLDLRLNQKKGVSAAERLKEVTMEELEGMFVENADEPYAHEIAEKIFAKLRRGEAID 227

Query: 187 TTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
           TT  L  +I++ + F      K        R+FQALRI VN+E E L + +      LK 
Sbjct: 228 TTTKLQQIIEEALKFIPEKERKEAVKKSCQRTFQALRIDVNSEFEVLYEFMEKLPNVLKE 287

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           GG + +++FHS EDR+VK+ F                     V+  I   V+ P+ E+  
Sbjct: 288 GGRVAILTFHSGEDRIVKRAFKELK--------------RAGVYSDIANDVIRPSAEECN 333

Query: 302 FNRRSRSAKLRAGMR 316
           +N R++S K+R  ++
Sbjct: 334 YNSRAKSTKMRWAIK 348


>gi|32475279|ref|NP_868273.1| methyltransferase [Rhodopirellula baltica SH 1]
 gi|42559448|sp|Q7UFX8|RSMH_RHOBA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|32445820|emb|CAD78551.1| conserved hypothetical protein-putative methyltransferase
           [Rhodopirellula baltica SH 1]
          Length = 325

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 104/317 (32%), Positives = 163/317 (51%), Gaps = 35/317 (11%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---------SNVIALDRDPF 69
           +HV V+  +++  +       I+D T+G GG++R   ++            VIA+DRDP 
Sbjct: 27  EHVSVMPNEIVQWVREINPTTIIDGTYGGGGHTRLLAEVLADAGSDSDTPRVIAIDRDPA 86

Query: 70  AVSCGQE--TMRDYKEQFSLFQATFS---QLQDYVPDKGVDGVVFDLGVSSMQIDCGDRG 124
            V   ++   ++D   +  LF  ++    +  D +     D +V DLG+SS Q+   +RG
Sbjct: 87  VVRRDEQKSWIKD-DPRIELFLGSYESSPKALDALDLTHADALVLDLGLSSDQLADRNRG 145

Query: 125 FSFQ-KSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV-KRRQ 181
           F+F      LD+R    +G+ A   + Q + K++   +   GEE+ + RIA  I  + R+
Sbjct: 146 FTFTIDDAELDLRFDPENGVPAHRWLQQHSEKEIADAIYRFGEERFSRRIAKQIFLRARE 205

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
             P     +L  + ++ V  S+N+ IHPATR+FQALRI VN+E+  L + L+SA   +  
Sbjct: 206 RNPVTKVGELVEICRRCVPRSRNHDIHPATRTFQALRIAVNDELGGLTRTLQSAPDWIAP 265

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           GG + V+SFHSLEDR+VK  F                      ++ +TKK + PT E+V 
Sbjct: 266 GGRVAVISFHSLEDRIVKNAFRED-----------------HRWEILTKKPLRPTDEEVQ 308

Query: 302 FNRRSRSAKLRAGMRTV 318
            N RSRSAKLR   R  
Sbjct: 309 ANPRSRSAKLRVAKRVE 325


>gi|115444103|ref|NP_001045831.1| Os02g0137600 [Oryza sativa Japonica Group]
 gi|42409129|dbj|BAD10379.1| putative methyltransferase [Oryza sativa Japonica Group]
 gi|42409260|dbj|BAD10523.1| putative methyltransferase [Oryza sativa Japonica Group]
 gi|113535362|dbj|BAF07745.1| Os02g0137600 [Oryza sativa Japonica Group]
 gi|125538002|gb|EAY84397.1| hypothetical protein OsI_05773 [Oryza sativa Indica Group]
          Length = 436

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 108/349 (30%), Positives = 158/349 (45%), Gaps = 47/349 (13%)

Query: 15  HTIGDHVPVLLEKVIALLN-PAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFA 70
           H+  +HVPV+L +V+A    P P +  +D T GA G+S +  +    +   I +D DP A
Sbjct: 87  HSHAEHVPVMLGEVLAAFRRPLPLRSFVDCTLGAAGHSLAMMEAHPEMELYIGMDVDPSA 146

Query: 71  VSCGQETMRDYKE----------------QFSLFQATFSQLQDYVPDK---------GVD 105
           +  G+  +  +                  +       F  ++  +            GVD
Sbjct: 147 LEIGRSRIEAFLANRETNGDDEDASQGTLRAYTHAKNFKYIKHVLGSVDENIAVGTSGVD 206

Query: 106 GVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILG 164
           G++ DLG+SSMQ++  DRGFS  + GPLDMRM     + A D++N     ++ RIL   G
Sbjct: 207 GILIDLGMSSMQVNRSDRGFSVLQDGPLDMRMDPKATLKAEDILNSWPDLEVGRILRDYG 266

Query: 165 EEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV--YFSKNNRIHPATRSFQALRIFVN 222
           EE     +   IVK R      +T +L  LIQ+T      +   I  ATR FQALRI VN
Sbjct: 267 EESNWQSLQKRIVKARAMGGLHSTGELVKLIQRTCTSSGGRQGWIKTATRVFQALRIAVN 326

Query: 223 NEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVM------------ 270
           +E+  L   L +    L   G L V+SFHSLEDR+VK+ F     +              
Sbjct: 327 DELRTLEDALHACFDCLATDGRLAVISFHSLEDRIVKQTFLELIHEDEIDDDEDDLVSAD 386

Query: 271 ---AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
                               +TK+ + P+QE+   N+R RSAKLR   +
Sbjct: 387 IDSEDEPWFKQRVQGKNGTILTKRPISPSQEEEELNQRCRSAKLRVIQK 435


>gi|319936250|ref|ZP_08010669.1| S-adenosyl-methyltransferase MraW [Coprobacillus sp. 29_1]
 gi|319808682|gb|EFW05224.1| S-adenosyl-methyltransferase MraW [Coprobacillus sp. 29_1]
          Length = 346

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 97/326 (29%), Positives = 164/326 (50%), Gaps = 28/326 (8%)

Query: 5   SCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNV 61
           + + +       +G H+ +++ +++  L+   G++ LD T G GG++    +      ++
Sbjct: 34  TIEKVIKKGSTPVGMHLSIMVNEILEFLDIQEGQIGLDCTLGYGGHTLKMLECLNHTGHM 93

Query: 62  IALDRDPFAVSCGQETM--RDYKEQF-SLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQ 117
            ALD DP      +E +  + Y E+  ++ Q  F  +     + G  D V+ DLGVSSMQ
Sbjct: 94  YALDIDPIESVKTKERLFNKGYGEELLTIKQCNFKDIDYVSKEVGLFDFVLADLGVSSMQ 153

Query: 118 IDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
           ID  +RGFS++K GPLD+R++   GI AS  + + N   L ++     +E  A  IA  I
Sbjct: 154 IDNPERGFSYKKEGPLDLRLNPEKGIPASQKLQELNKTQLEQLFIDNSDEPYAKEIAKNI 213

Query: 177 VKRRQSAP-FQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQ 230
               ++    +TT DL  +I+K++ F      K +    A R FQALRI VNNE + L +
Sbjct: 214 DSFLKTGRLIETTTDLYKIIEKSLSFIPVNERKESIKKSAARVFQALRIEVNNEFDVLIE 273

Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK 290
            +      LK+GG + +++FHS EDR+VKK F       +                   +
Sbjct: 274 FMEKLPNILKSGGRVAILTFHSGEDRIVKKAFKEMKNLGIYSDAA--------------R 319

Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMR 316
            V+ P++E+   N R++S K+R  ++
Sbjct: 320 NVIRPSKEECHMNSRAKSTKMRWAIK 345


>gi|258614830|ref|ZP_05712600.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium DO]
          Length = 234

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 86/230 (37%), Positives = 137/230 (59%), Gaps = 5/230 (2%)

Query: 94  QLQDYVPDK--GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQ 150
           +L++ + +    VDG+++DLGVSS Q+D  +RGFS+ +  PLDMRM  S  +SA  V+N+
Sbjct: 1   ELEERLSEHVDKVDGILYDLGVSSPQLDEAERGFSYHQDAPLDMRMDQSAPLSAYHVINE 60

Query: 151 ANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVY-FSKNNRIHP 209
            +  +L +I    GEEK + +IA  I + R++ P QTT +L  +I++ +   ++    HP
Sbjct: 61  YSYHELVKIFFRYGEEKFSKQIAREIERVRKTKPIQTTGELVEIIKQVIPAPARRKGGHP 120

Query: 210 ATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSG-K 268
           A R FQA+RI VN+E+      L  A + LK  G + V++FHSLEDR+VK  F   S  +
Sbjct: 121 AKRIFQAVRIAVNDELGAEEASLEQAIRLLKVNGRISVITFHSLEDRIVKSMFKEYSTVQ 180

Query: 269 VMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318
            +     +  +      + IT+K ++P++E++  N RSRSAKLR   +  
Sbjct: 181 DLPPGLPVIPDEFQPELKVITRKPILPSEEELTENNRSRSAKLRIAEKIR 230


>gi|94264627|ref|ZP_01288410.1| methyltransferase [delta proteobacterium MLMS-1]
 gi|93454922|gb|EAT05163.1| methyltransferase [delta proteobacterium MLMS-1]
          Length = 301

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 104/323 (32%), Positives = 156/323 (48%), Gaps = 31/323 (9%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65
           M +AI      H PVLLE+V+  L PA G   +D   G GG++ +          ++  D
Sbjct: 1   MEAAI------HQPVLLEEVLHWLAPAAGGTYVDGNLGLGGHAAAILAASAPDGRLLGFD 54

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSM---QIDCGD 122
            D  A+   +  +  +  +    +  FS+L+  + +  +  +   L    +   Q+  G 
Sbjct: 55  WDQQALEQARRKLAPWGSRVITVRRNFSELEAVLAELAISKIDGLLLDLGLSSLQLAQGG 114

Query: 123 RGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSFQ   PLDMRM    G SA++++++ +  +L  I    GEE+QA  IA  +V  RQ
Sbjct: 115 RGFSFQADEPLDMRMDQRGGESAAEMLHRLSAAELADIFYYYGEERQARPIAARVVAERQ 174

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
                ++  L+ L+ + V    + R IH ATR FQALRI VN E+E L + L  A   L 
Sbjct: 175 RGMISSSGQLAELVAQAVPRRFHPRNIHVATRVFQALRIAVNRELENLEKILAVAPPLLT 234

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300
           AG    V+SFHSLEDRLVK+ FA                      + +T K V   ++++
Sbjct: 235 AGARFCVISFHSLEDRLVKQAFAGD-----------------RRLRVLTGKPVTAGEQEL 277

Query: 301 AFNRRSRSAKLRAGMRTVERSIE 323
             N R+RSA+LR   +      E
Sbjct: 278 GSNPRARSARLRVAEKVAVAGGE 300


>gi|24214745|ref|NP_712226.1| S-adenosyl-methyltransferase [Leptospira interrogans serovar Lai
           str. 56601]
 gi|42559478|sp|Q8F4J6|RSMH_LEPIN RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|24195744|gb|AAN49244.1| S-adenosyl-methyltransferase [Leptospira interrogans serovar Lai
           str. 56601]
          Length = 334

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 111/330 (33%), Positives = 170/330 (51%), Gaps = 29/330 (8%)

Query: 3   SKSCKTMSSAIHHTIGD--HVPVLLEKVI----ALLNPAPGKVILDATFGAGGYSRSFCK 56
              C+T++   + T  +  H  V  ++++             + LD T G GG+S  F K
Sbjct: 2   ESPCRTITLEKNGTSLEPVHYSVQGKEILQIFKENFQKEDPVLFLDGTAGEGGHSFLFLK 61

Query: 57  MGS--NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL-QDYVPDKGVD----GVVF 109
                 +I  DRDP  +S     + D+ E+    Q  FS++ Q  +   G+D    G++ 
Sbjct: 62  EFPNSRIILCDRDPIMLSRALTRLSDFSERVVSIQTNFSEINQKLLTSYGIDQTPQGILL 121

Query: 110 DLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQ 168
           DLG+S+  +    RGFSF++S PLDMR++  SG SA +++N      L  I    GEE+ 
Sbjct: 122 DLGISTFHLFHSGRGFSFRESEPLDMRLNPNSGQSAEEILNIYPKDRLMNIFYTYGEERW 181

Query: 169 ASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEE 227
           + +IA  IV+ R+     TT +L++L+ K +         HPATR FQALRI VN E+  
Sbjct: 182 SKKIAEVIVETRKQNSISTTFELANLVSKIIPRKFWPPGRHPATRIFQALRIEVNQELAH 241

Query: 228 LAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS 287
           +  GL+     L+ GG++ V+SFHSLEDR+VK  F   + +                F+ 
Sbjct: 242 IENGLKLLLDLLRLGGVIQVISFHSLEDRIVKNSFRDYAKQ--------------NGFEL 287

Query: 288 ITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           +TKK + P+QE++  N  SRSAKLR   +T
Sbjct: 288 LTKKPIFPSQEEIDENPASRSAKLRILRKT 317


>gi|94266846|ref|ZP_01290506.1| methyltransferase [delta proteobacterium MLMS-1]
 gi|93452476|gb|EAT03075.1| methyltransferase [delta proteobacterium MLMS-1]
          Length = 301

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 104/323 (32%), Positives = 155/323 (47%), Gaps = 31/323 (9%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65
           M +AI      H PVLLE+V+  L PA G   +D   G GG++ +          ++  D
Sbjct: 1   MEAAI------HQPVLLEEVLHWLAPAAGGTYVDGNLGLGGHAAAILAASAPDGRLLGFD 54

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSM---QIDCGD 122
            D  A+   +  +  +  +    +  FS+L+  + +  +  +   L    +   Q+  G 
Sbjct: 55  WDQQALEQARRKLAPWGSRVITVRRNFSELEAVLAELAISKIDGLLLDLGLSSLQLAQGG 114

Query: 123 RGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSFQ   PLDMRM   G  SA++++++ +  +L  I    GEE+QA  IA  +V  RQ
Sbjct: 115 RGFSFQADEPLDMRMDQRGKESAAELLHRLSAAELADIFYYYGEERQARPIAARVVAERQ 174

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
                ++  L+ L+ + V    + R IH ATR FQALRI VN E+E L + L  A   L 
Sbjct: 175 RGMISSSGQLAELVAQAVPRRFHPRNIHVATRVFQALRIAVNRELENLEKILAVAPPLLT 234

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300
           AG    V+SFHSLEDRLVK+ FA                      + +T K V    +++
Sbjct: 235 AGARFCVISFHSLEDRLVKQAFAGD-----------------RRLRVLTGKPVTAGDQEL 277

Query: 301 AFNRRSRSAKLRAGMRTVERSIE 323
             N R+RSA+LR   +      E
Sbjct: 278 GSNPRARSARLRVAEKVAVAGGE 300


>gi|225028745|ref|ZP_03717937.1| hypothetical protein EUBHAL_03024 [Eubacterium hallii DSM 3353]
 gi|224953936|gb|EEG35145.1| hypothetical protein EUBHAL_03024 [Eubacterium hallii DSM 3353]
          Length = 352

 Score =  286 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 98/332 (29%), Positives = 163/332 (49%), Gaps = 32/332 (9%)

Query: 3   SKSCKTMSSAI---HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG- 58
            K   T+   I       G H+ + +++++  L   PG+  LD T G GG++R   +   
Sbjct: 35  EKYKDTIEKVIRKGSTPAGMHISICVQEILDFLQIQPGQKGLDCTLGYGGHTRKMLECLQ 94

Query: 59  --SNVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLG 112
              ++  LD DP  +    + +R      +  ++ Q  F  +     + G  D V+ DLG
Sbjct: 95  GEGHIYGLDVDPIEIVKTTDRLRKAGYGEDILTIIQQNFRNIDLVAEEHGLFDFVLADLG 154

Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASR 171
           VSSMQID  +RGFS++  GPLD+R++   GISA++ + +    ++  +L    +E  A +
Sbjct: 155 VSSMQIDNPERGFSYKVEGPLDLRLNPDKGISAAERLRELTRDEIEGMLRENADEPYAEQ 214

Query: 172 IAHAIVK-RRQSAPFQTTQDLSSLIQKTVYFSKNNR------IHPATRSFQALRIFVNNE 224
           IA  I+K  RQ     TT  L  +I++ + F  +++           R+FQALRI VN+E
Sbjct: 215 IAKEIMKTFRQGEQIDTTGQLKEVIERALVFLPDDKEKKDTIKKTCQRTFQALRIDVNSE 274

Query: 225 IEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV 284
            E L + L      L  GG + +++FHS EDRLVKK +                     +
Sbjct: 275 FEVLEEFLEKLPHILAPGGRVAILTFHSGEDRLVKKIWKR--------------QQKEGL 320

Query: 285 FQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           +  + K V+ P++E+   N R+RS K+R  ++
Sbjct: 321 WSEVAKNVIRPSKEECHRNGRARSTKMRWAIK 352


>gi|15238896|ref|NP_196652.1| mraW methylase family protein [Arabidopsis thaliana]
 gi|8979725|emb|CAB96846.1| putative protein [Arabidopsis thaliana]
 gi|16604434|gb|AAL24223.1| AT5g10910/T30N20_180 [Arabidopsis thaliana]
 gi|28416479|gb|AAO42770.1| At5g10910/T30N20_180 [Arabidopsis thaliana]
 gi|332004225|gb|AED91608.1| mraW methylase family protein [Arabidopsis thaliana]
          Length = 434

 Score =  286 bits (732), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 112/339 (33%), Positives = 169/339 (49%), Gaps = 42/339 (12%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCGQE 76
           HVPV+L +V+ + +    +  +D T GA G+S S  +  S +   + +D DP A   G  
Sbjct: 95  HVPVMLGEVLDIFSSVRLRSFVDCTLGAAGHSSSIIQSHSELKNFVGMDVDPVARKLGHF 154

Query: 77  TMRDYK----------EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126
            +              + F   ++  +  Q  + D GVDG++ DLG+SSMQ++  +RGFS
Sbjct: 155 HIDSLMHPTLKASIVLKNFKYIKSVIADTQPELLDVGVDGILMDLGMSSMQVNNPERGFS 214

Query: 127 FQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
             + GPLDMRM     ++A D+VN     +L R+L   GEE     + + IVK R +   
Sbjct: 215 VLQEGPLDMRMDPQATLTAEDIVNSWPESELGRVLRDYGEESNWYLLQNRIVKARLNGGL 274

Query: 186 QTTQDLSSLIQKTVYFSKNNR---IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
            +T +L  LI+ T   S+  R   I  ATR FQ LRI VN+E++ L   L S+   L  G
Sbjct: 275 HSTGELVDLIRGTSPASRGGRQGWIKTATRVFQGLRIAVNDELKTLQNSLYSSFDVLAPG 334

Query: 243 GLLIVVSFHSLEDRLVKKFF--------ASRSGKVMAVRHM-----------------IP 277
           G L V+SFHSLEDR+VK+ F           +G+  +V+                   I 
Sbjct: 335 GRLAVISFHSLEDRVVKQTFLDILGFQREEINGEGSSVKPERQIEERVEKELKEKEEWIK 394

Query: 278 SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
                +    +TK+ + P++E+   NRR+RSAKLR   +
Sbjct: 395 QTVIASKGVILTKRPITPSEEEERLNRRARSAKLRVIQK 433


>gi|116072034|ref|ZP_01469302.1| methyltransferase [Synechococcus sp. BL107]
 gi|116065657|gb|EAU71415.1| methyltransferase [Synechococcus sp. BL107]
          Length = 285

 Score =  286 bits (732), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 103/302 (34%), Positives = 154/302 (50%), Gaps = 28/302 (9%)

Query: 24  LLEKVIALLN--PAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMR 79
           + + V+A     P    V++DAT G GG+S    +     ++I LD+DP A +   E + 
Sbjct: 1   MADAVVAGAEHLPHQNGVLIDATLGGGGHSALLLERFPGFHLIGLDQDPTARAAAAERLA 60

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
            + ++  +    F+    Y P   V  V+ DLGVSS Q+D  +RGFSF+  GPLDMRM+ 
Sbjct: 61  AFGDRVEILATNFA---SYTPPAPVLMVLADLGVSSPQLDVAERGFSFRLDGPLDMRMNP 117

Query: 140 --SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQTTQDLSSLIQ 196
                +A++++++     L  ++   GEE+ + RIA  I        P++ T  L+  + 
Sbjct: 118 GSDAETAAELIDRLEENALADLIYGYGEERLSRRIARRIKADLAAQGPYEGTAALAYAVA 177

Query: 197 KTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
                  +  RIHPATR+FQALRI VN+E+  L + L  A   L+ GG++ V+SFHSLED
Sbjct: 178 GCYPPKARRGRIHPATRTFQALRIAVNDELAVLDRLLDQAPDWLEPGGVMGVISFHSLED 237

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           R VK  F                       + IT+K  V T+++   N RSRSAK R   
Sbjct: 238 RRVKTAFLQDE-----------------RLERITRKPTVATEDEQDSNPRSRSAKWRLAR 280

Query: 316 RT 317
           R 
Sbjct: 281 RV 282


>gi|167756448|ref|ZP_02428575.1| hypothetical protein CLORAM_01981 [Clostridium ramosum DSM 1402]
 gi|167703856|gb|EDS18435.1| hypothetical protein CLORAM_01981 [Clostridium ramosum DSM 1402]
          Length = 362

 Score =  286 bits (732), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 92/326 (28%), Positives = 161/326 (49%), Gaps = 28/326 (8%)

Query: 5   SCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNV 61
           + + +       +G H+ +++++++  L+   G++ LD T G GG++    +      ++
Sbjct: 50  TIEKVIKKGSTPVGMHLSIMVDEILEFLDIQEGQIGLDCTLGYGGHTLKMLECLNYTGHM 109

Query: 62  IALDRDPFAVSCGQETM--RDYK-EQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQ 117
            ALD DP      +E +  + Y  +  ++    F  +     + G  D V+ DLGVSSMQ
Sbjct: 110 YALDIDPIESIKTKERLLGKGYGEDVLTIKNCNFKDIDIISKEVGLFDFVLADLGVSSMQ 169

Query: 118 IDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
           ID  +RGFS++K GPLD+R++   G+ AS  + + N   L ++     +E  A  IA  I
Sbjct: 170 IDNPERGFSYKKEGPLDLRLNPQKGVPASIKLQELNRDQLEQLFIENSDEPYAKEIARNI 229

Query: 177 VKRRQSAP-FQTTQDLSSLIQKT---VYFSKNNRI--HPATRSFQALRIFVNNEIEELAQ 230
               +S     TT  L  +I+K+   +  ++   I    A R FQALRI VN E + L +
Sbjct: 230 DSYLKSGQLITTTTQLYKIIEKSLSSIPVTERKDIVKKSAARVFQALRIEVNREFDVLIE 289

Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK 290
            +      LK GG + +++FHS EDR+VKK F       +              +  + +
Sbjct: 290 FMDKLPTILKPGGRVAILTFHSGEDRIVKKAFKEMKNLGI--------------YSDVAR 335

Query: 291 KVVVPTQEDVAFNRRSRSAKLRAGMR 316
            V+ P++E+   N R++S K+R  ++
Sbjct: 336 NVIRPSKEECHMNSRAKSTKMRWAIK 361


>gi|262195180|ref|YP_003266389.1| S-adenosyl-methyltransferase MraW [Haliangium ochraceum DSM 14365]
 gi|262078527|gb|ACY14496.1| S-adenosyl-methyltransferase MraW [Haliangium ochraceum DSM 14365]
          Length = 319

 Score =  285 bits (730), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 106/323 (32%), Positives = 168/323 (52%), Gaps = 35/323 (10%)

Query: 20  HVPVLLEKVIALLNPAPGKVILD---------------ATFGAGGYSRSFCKMGSNVIAL 64
           H+PVL E+V+A ++P PG V  D               A                 +  +
Sbjct: 9   HLPVLKEEVLAHMSPRPGGVYCDGTLGGGGHAGAVLARA------------NPDGRLYGI 56

Query: 65  DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCG 121
           DRD  A++  Q  + D+ E+    + T+    + + + G   +DG++ D+G SS Q D  
Sbjct: 57  DRDATALAAAQRALADFGERVQFLRGTYGYADELLAEAGAPPLDGILLDIGPSSPQFDRA 116

Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF + GP+DMRM  S G +A D++ +    +L  IL   GEE+ + RIA  I    
Sbjct: 117 ERGFSFLRPGPIDMRMDQSSGETALDLMRRLGPGELADILWSFGEERFSKRIAARIKDAV 176

Query: 181 QSAPFQTTQDLSSLIQKTVYF--SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           +    +TT DL++L++  +     +  + HPAT++FQALRI VN E+++LA+ LR     
Sbjct: 177 RDHRLETTTDLAALVEDAIPASVRRQMKTHPATKTFQALRIAVNGELDQLARFLRVFPPL 236

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFAS--RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPT 296
           L  GG  +++SFHSLEDRLVK+ F     S ++              V   +T+K V  +
Sbjct: 237 LAPGGRCVIISFHSLEDRLVKRAFRDLAWSSRLPPDLARAAGERIEPVCVPVTRKAVFAS 296

Query: 297 QEDVAFNRRSRSAKLRAGMRTVE 319
           ++++A N R+RSA+LRA  +   
Sbjct: 297 EDEIASNPRARSARLRACEKVAA 319


>gi|294660427|ref|NP_853182.2| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Mycoplasma gallisepticum str. R(low)]
 gi|298286859|sp|Q7NB79|RSMH_MYCGA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|284812086|gb|AAP56750.2| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Mycoplasma gallisepticum str. R(low)]
 gi|284930664|gb|ADC30603.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Mycoplasma gallisepticum str. R(high)]
          Length = 313

 Score =  285 bits (729), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 102/306 (33%), Positives = 153/306 (50%), Gaps = 11/306 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76
           H PVLL++VI  L      + LD T G GG+S          + +I  D+D  A++   +
Sbjct: 9   HYPVLLKEVIENLITTKDGIYLDLTIGFGGHSYNIIKILDQKARLIGFDQDLKAIAHCNQ 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
              ++    SL    F  L+ ++       +DG + DLGVSS Q+D  DRGFS+   G L
Sbjct: 69  LFSEF-NNVSLINDNFVNLKKHLQLMQIDNIDGCLIDLGVSSYQLDQADRGFSYHSLGRL 127

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  +  + A+ ++  + V +L +I+   GE K   R+  A+ K  +      T ++ 
Sbjct: 128 DMRMDQNKAVDATKLIQNSTVSELVKIMKNYGEIKDPYRVVVALKKAFEKKELN-TLEVV 186

Query: 193 SLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            LI+K V  ++     HPA R FQALRI VNNE+E L + L      L  GG + +++FH
Sbjct: 187 ELIKKHVNKAELYANKHPARRYFQALRIAVNNELEVLEKLLSYLPSYLNKGGKIAIITFH 246

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLE+++VKK F   +         I +           K  + PTQ ++  NRRSRSAKL
Sbjct: 247 SLEEKIVKKVFRHLASISSLNNLPINNELLKKYHNHFNKG-LSPTQSELETNRRSRSAKL 305

Query: 312 RAGMRT 317
               + 
Sbjct: 306 FVLEKI 311


>gi|260881478|ref|ZP_05404498.2| S-adenosyl-methyltransferase MraW [Mitsuokella multacida DSM 20544]
 gi|260848533|gb|EEX68540.1| S-adenosyl-methyltransferase MraW [Mitsuokella multacida DSM 20544]
          Length = 369

 Score =  285 bits (729), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 94/335 (28%), Positives = 169/335 (50%), Gaps = 35/335 (10%)

Query: 3   SKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---S 59
            +    + +  +   G H+P+++++++ +L   PG+   DAT G GG++ +  +      
Sbjct: 47  GEEIAHVRAKGNTPAGTHIPIMVKEILEVLAIKPGERGFDATLGYGGHTLAMLEKLEGKG 106

Query: 60  NVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSS 115
           ++   D DP      +  +R      + +   Q  F ++     + G  D V+ DLGVSS
Sbjct: 107 HLYGGDVDPIESEKTEARIRAKGFGPDIWERRQMNFCEIDKLAEEVGPFDFVLADLGVSS 166

Query: 116 MQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAH 174
           MQID  +RGF+++  GPLD+R++   GISA+D + Q + ++L  ++    +E  A  IA 
Sbjct: 167 MQIDNPERGFTYKSDGPLDLRLNPQAGISAADRLRQLDYEELVGMMQENADEPYAEAIAR 226

Query: 175 AIVKRRQSAPFQTTQDLSSLIQKT-------------VYFSKNNRIHPATRSFQALRIFV 221
            IV+  +  P +TT++L ++I+               +   ++     + R FQALRI V
Sbjct: 227 QIVRAEKHRPIRTTRELYAVIEAALEKVHLPRDAAGKIPDRRDVIRKSSARVFQALRIDV 286

Query: 222 NNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH 281
           N+E E L + +     AL  GG + +++FHS EDR+VKK F +                 
Sbjct: 287 NHEYEVLYEFMEKLPYALAPGGRVAILTFHSGEDRIVKKAFKAF--------------HQ 332

Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
             +++ I ++V+ P++E+   N R+ S KLR  +R
Sbjct: 333 QGIYRDIAREVIRPSREECYENSRAHSTKLRWAIR 367


>gi|67969111|dbj|BAE00910.1| unnamed protein product [Macaca fascicularis]
          Length = 450

 Score =  285 bits (729), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 116/356 (32%), Positives = 174/356 (48%), Gaps = 74/356 (20%)

Query: 20  HVPVLLEKVIALLNPAPGKV---------------------------------ILDATFG 46
           H+PV++++V+  L+P  G++                                  LD TFG
Sbjct: 72  HIPVMVDEVVHCLSPQKGQISFMCIVLFAYPNNLVMWTRMVHLHTRKLRLREIFLDMTFG 131

Query: 47  AGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV 104
           +GG++++  +  S+  + ALDRDP A +  +     Y ++       FSQ +  +   GV
Sbjct: 132 SGGHTKAILQKESDIVLYALDRDPTAYALAEHLSELYPKKIRAVLGQFSQAEALLTKAGV 191

Query: 105 -----DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS----CSGISASDVVNQANVKD 155
                DGV+ DLG SSMQ+D  +RGFS +K GPLDMRM         +A+DVVN  +   
Sbjct: 192 QPGTFDGVLMDLGCSSMQLDTPERGFSLRKDGPLDMRMDGGRYPDMPTAADVVNALDQPA 251

Query: 156 LTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSK--------NNRI 207
           L  IL   GEEK A +IA AIV+ R   P   TQ L+S++      S             
Sbjct: 252 LASILRTYGEEKHARKIASAIVQARSIYPITRTQQLASIVAGAFPPSAIYARKDLLQRST 311

Query: 208 HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF----- 262
           H AT++FQALRIFVNNE+ EL  GL++A+K L+ GG L+ +SFHSLEDR++K+F      
Sbjct: 312 HIATKTFQALRIFVNNELNELYTGLKTAQKFLRPGGRLVALSFHSLEDRIIKRFLLGISM 371

Query: 263 --------------ASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE---DVA 301
                          S+ G        +     P +++ I KK +  +++   ++ 
Sbjct: 372 TERFNLSVRQQVMKTSQLGSGHENTEEVSMRRAPLMWELIHKKALFKSEQSYREIR 427


>gi|283797253|ref|ZP_06346406.1| S-adenosyl-methyltransferase MraW [Clostridium sp. M62/1]
 gi|291075103|gb|EFE12467.1| S-adenosyl-methyltransferase MraW [Clostridium sp. M62/1]
 gi|295092386|emb|CBK78493.1| S-adenosyl-methyltransferase MraW [Clostridium cf. saccharolyticum
           K10]
          Length = 383

 Score =  285 bits (729), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 96/331 (29%), Positives = 162/331 (48%), Gaps = 31/331 (9%)

Query: 3   SKSCKTMSSAIHH---TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG- 58
            K   T+   I       G H+ + +++++   +  PG+V LDAT G GG++R   K   
Sbjct: 66  EKYRDTVEKVIQKGGTPAGMHISICVKEILDFFDIRPGQVGLDATLGYGGHTREMLKKLQ 125

Query: 59  --SNVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLG 112
              ++  LD DP      ++ + D     +  ++    F+ +     + G  D ++ DLG
Sbjct: 126 GQGHIYGLDVDPIESEKTKKRLADAGFGPDILTVKLMNFADIDKVAEEAGPFDFILADLG 185

Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASR 171
           VSSMQID  +RGF+++  GPLD+RM  + G +A++ +   + ++   +L    +E  A  
Sbjct: 186 VSSMQIDNPERGFTYKYEGPLDLRMDPTRGETAAERLKGMDREEFCGMLMENSDEPYAEE 245

Query: 172 IAHAIVKR-RQSAPFQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEI 225
           I+H +  R ++     TT  L   +++ + F      K        R+FQALRI VN+E 
Sbjct: 246 ISHTVFSRLKRGGRIDTTTQLREAVEEALSFLPEKERKEAVKKSCARTFQALRIDVNSEF 305

Query: 226 EELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF 285
           E L   L     ALK+GG   +++FHS EDRLVKK F                     ++
Sbjct: 306 EVLYAFLEKLPSALKSGGKAAILTFHSGEDRLVKKSFREYK--------------RAGLY 351

Query: 286 QSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
             I ++V+ P+ E+ A N R++S K+R  ++
Sbjct: 352 SEIAQEVIRPSAEECARNSRAKSTKMRWAVK 382


>gi|307179074|gb|EFN67546.1| Putative S-adenosyl-L-methionine-dependent methyltransferase
           CG14683 [Camponotus floridanus]
          Length = 427

 Score =  285 bits (729), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 118/324 (36%), Positives = 182/324 (56%), Gaps = 28/324 (8%)

Query: 22  PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQETMR 79
           PV+ ++V+  ++ +PGK  +D TFGAGG++  F +  S++   ALDRDP A    Q+  +
Sbjct: 103 PVMAQEVLTYMDLSPGKTYVDMTFGAGGHTTKFLEYLSDIKIFALDRDPVAYKYAQQLSQ 162

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
            Y  +      TFS+L   +    +     DG +FD G SSMQI+  +RGFS  K+GPLD
Sbjct: 163 KYPGKVIPLLGTFSELPQLLKQYNIKRNSIDGFLFDFGCSSMQIEDANRGFSLLKNGPLD 222

Query: 135 MRMS--CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQTTQDL 191
           MRM+      +A+DV+++A  +DL RI+ + G+EK+A +IA AI++ R      +TTQ+L
Sbjct: 223 MRMNGCLKQPTAADVLDRATEEDLARIIKVYGQEKRAKKIARAIIEARYMFRKLETTQEL 282

Query: 192 SSLIQKTVYFSKNNR-----IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
             L++  +             H A ++FQALRIFVNNE+ E+  G+  A   LK  G LI
Sbjct: 283 IQLVESVLDDEIRTDNLDKYSHSAVKTFQALRIFVNNELNEINYGILLANIYLKLSGRLI 342

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-----FQSITKKV--------V 293
            +SF+SLED ++K+  +      +A    +    +  V     FQ +T+K         +
Sbjct: 343 TISFNSLEDTIIKRHLSGNITDNVANTVALKYANYGKVFNTNEFQILTEKPWKMMHKHVL 402

Query: 294 VPTQEDVAFNRRSRSAKLRAGMRT 317
            PT E++  N +S+SAKLRA M+ 
Sbjct: 403 TPTSEEIEINPKSQSAKLRAIMKV 426


>gi|71893756|ref|YP_279202.1| putative S-adenosyl-methyltransferase [Mycoplasma hyopneumoniae J]
 gi|72080726|ref|YP_287784.1| S-adenosyl-methyltransferase [Mycoplasma hyopneumoniae 7448]
 gi|88909202|sp|Q4A7X8|RSMH_MYCH7 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|88909203|sp|Q4A9T0|RSMH_MYCHJ RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|71851883|gb|AAZ44491.1| putative S-adenosyl-methyltransferase [Mycoplasma hyopneumoniae J]
 gi|71913850|gb|AAZ53761.1| S-adenosyl-methyltransferase [Mycoplasma hyopneumoniae 7448]
          Length = 296

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 105/300 (35%), Positives = 154/300 (51%), Gaps = 16/300 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76
            HVPVLLE++I  L   P    +D T G GG+S +  +      ++  D+D  A+   + 
Sbjct: 1   MHVPVLLEELILALEINPKGFYVDLTLGRGGHSLAILEKISNGKLVVFDKDQDALDQTRP 60

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +  YK+   +  + FS+   Y+ + G   VDG + DLGVSS QID  +RGFS+ K G L
Sbjct: 61  KLLAYKQNIEIIWSDFSRFDFYLENLGIQFVDGFIIDLGVSSPQIDDPERGFSYSKDGNL 120

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  S  +SA  V+N+   + L  I    G+   A  IA AI+  R   P +TT +L 
Sbjct: 121 DMRMDKSQKLSAFIVLNEYPYEKLVEIFFKYGQIPYAREIARAIINSR---PLKTTFELV 177

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +L++K +      + +     FQA+RI VNNE++ L + L    K LK G  + +++FHS
Sbjct: 178 NLVKKVIPALVLVKKNFIKNVFQAVRIEVNNELDSLQKLLEKLPKFLKQGSKVAIITFHS 237

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VKK F     K                    + KV  P   ++  N R++SAKLR
Sbjct: 238 LEDRIVKKAFLDLIRKD-------KLEFFQKGLPKFSMKVFRPKANELKSNPRAKSAKLR 290


>gi|149920500|ref|ZP_01908968.1| methyltransferase [Plesiocystis pacifica SIR-1]
 gi|149818681|gb|EDM78126.1| methyltransferase [Plesiocystis pacifica SIR-1]
          Length = 331

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 115/320 (35%), Positives = 168/320 (52%), Gaps = 27/320 (8%)

Query: 20  HVPVLLEKVIALLNPA----PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSC 73
           H  VL E V+  L PA    P   ++D T GAGG++ +       + V+ +DRDP A+  
Sbjct: 5   HESVLAEAVVTALVPAIDSVPEGALVDVTCGAGGHTAALLARCTPNRVVLVDRDPAALEH 64

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +  +           A F+     +   GV     ++ DLGVSS Q+D  +RGFSF+  
Sbjct: 65  ARRRLHGAACTVDFCHAPFADFAAELDRLGVGTVSALIADLGVSSHQLDTAERGFSFRAD 124

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM  + G +A+  +    V +L R+L   GEE +A+RIA AI+  R      TT+
Sbjct: 125 APLDMRMDPTRGETAAARLAAMTVDELVRVLRRYGEEAEAARIAPAILAARPQ----TTK 180

Query: 190 DLSSLIQKTVYFSKN----NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            L+ ++++ +          RIHPATR+FQALRI VN E+++L + L      L  GG +
Sbjct: 181 VLAEVVEQAMSARSRRALGKRIHPATRTFQALRILVNGELDQLDRLLEDGPARLAVGGRM 240

Query: 246 IVVSFHSLEDRLVKKFFAS--RSGKVMAVRHMIPSNAHPAVFQ-------SITKKVVVPT 296
            V+SFHSLEDR VK+ FA   R+ K+ A   +  +      F+        I++K VV  
Sbjct: 241 GVISFHSLEDRPVKQRFAKLCRAPKLPASLPLTTAELEARGFRAHFGVPAEISRKGVVAD 300

Query: 297 QEDVAFNRRSRSAKLRAGMR 316
           + +   N RSRSA+LRA  R
Sbjct: 301 EAERERNPRSRSARLRAIER 320


>gi|149178739|ref|ZP_01857322.1| S-adenosyl-methyltransferase MraW [Planctomyces maris DSM 8797]
 gi|148842437|gb|EDL56817.1| S-adenosyl-methyltransferase MraW [Planctomyces maris DSM 8797]
          Length = 305

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 105/311 (33%), Positives = 167/311 (53%), Gaps = 31/311 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H+PVLL +VI  L+ +PG +++D T GAGG+S    K       +I LDRD   +    +
Sbjct: 13  HLPVLLREVITQLDLSPGLIVVDGTVGAGGHSEHILKKINNEGTLIGLDRDAMMLGFATQ 72

Query: 77  TMRD---YKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            ++       +  L Q+++++L   + +     VD V+ DLG+SS Q+   +RGF F+ +
Sbjct: 73  KLKPESLPAGRCYLRQSSYAELPAVMEELQISSVDRVLLDLGLSSDQLSDDERGFGFESA 132

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
           G LD+R     G+ A  ++      +L  IL + GEE+ + RIA+ IVK+R++AP +T  
Sbjct: 133 GELDLRFDTRQGVPAWQLLESLPESELCEILEVYGEERFSQRIANQIVKQRKTAPVRTAA 192

Query: 190 DLSSLIQKTVYFS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRSA-EKALKAGGLLI 246
           DL   +Q+ +        R +PATR FQALRI  N E+E+L   L +   + L+ GG  +
Sbjct: 193 DLIKAVQQAIPGKALAAARKNPATRVFQALRIAANQELEQLETMLETVLPQVLQPGGRAV 252

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           ++SFHSLEDR+  +                     P   +++T K +V TQ +   N R 
Sbjct: 253 IISFHSLEDRMSSRRLK------------------PGDLKNLTAKPIVATQAEQRVNPRC 294

Query: 307 RSAKLRAGMRT 317
           R+AKLR  ++T
Sbjct: 295 RTAKLRVAVKT 305


>gi|116626359|ref|YP_828515.1| S-adenosyl-methyltransferase MraW [Candidatus Solibacter usitatus
           Ellin6076]
 gi|122251651|sp|Q01Q40|RSMH_SOLUE RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|116229521|gb|ABJ88230.1| S-adenosyl-methyltransferase MraW [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 286

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 112/303 (36%), Positives = 163/303 (53%), Gaps = 25/303 (8%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQE 76
            HVPV+  + I LL   P  V LDAT G GG+S    +      VIA DRD  ++   + 
Sbjct: 1   MHVPVMPAEAIELLAIRPEGVYLDATAGLGGHSGLIARQLTTGTVIANDRDTRSLEMARA 60

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
              ++ ++      +F  L D V   G   VDG++ DLGVS  Q+   DRGFSF   GPL
Sbjct: 61  NTAEWSDRMCFHYGSFGSLSDAVSQAGFEKVDGLLADLGVSRYQLTAPDRGFSFMADGPL 120

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  S   +A+D+VN  + K L  ++  +GEE++A RIA A     ++ P ++T  L+
Sbjct: 121 DMRMDASIQTTAADLVNHTDEKTLADLIYQMGEERRARRIARA---IVRARPLRSTLHLA 177

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            ++++ V   +  R+HPAT++F ALR+ VN+E  EL + L  A   LK+GG ++V+SF S
Sbjct: 178 DVVERAVP--RTGRLHPATKTFMALRMAVNDEPGELRRLLEIAPGLLKSGGRMVVISFMS 235

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
            +DR+VK+ F        A                +TK  + P+ E+   N  SRSAKLR
Sbjct: 236 SDDRMVKEKFKELGQSKQAT--------------ILTKHPLQPSDEESFNNPASRSAKLR 281

Query: 313 AGM 315
           A  
Sbjct: 282 ALE 284


>gi|124515896|gb|EAY57405.1| S-adenosyl-methyltransferase (MraW) [Leptospirillum rubarum]
          Length = 307

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 104/301 (34%), Positives = 159/301 (52%), Gaps = 21/301 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQ-ETM 78
           H+PV+ ++V+ +LN  PG+  +DAT G GG++R+  + G +VIA+DRDP A+   + E +
Sbjct: 17  HLPVMTKEVLEVLNVHPGQWYVDATLGQGGHARAILEAGGSVIAIDRDPKAIEKARLELL 76

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVD--GVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
             + E+  L     + + +++P   VD  GVV D G S  Q      G SF   GPLDMR
Sbjct: 77  PIFGERLRLTCMNHAGMGEFLPSMRVDISGVVLDSGWSMAQASENGAGLSFDAEGPLDMR 136

Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT-QDLSSL 194
           M  +   +A D++ Q + ++L  I    GEE  A  I+ A+V+ R       T ++L++ 
Sbjct: 137 MDPTLERTAMDILEQQSAEELAAIFSNFGEEPLALPISRALVQSRSRGRLPRTPKELAAF 196

Query: 195 IQKTVYFS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +    Y    + +R HPATR F ALRI VN EI+ L +G+      L +G  L V++FHS
Sbjct: 197 VSGVYYRKGYRRSRRHPATRVFMALRIEVNGEIDSLVRGVSGVRSILGSGARLAVLTFHS 256

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
            EDR +K  F     +                 + +  K V+P + ++  N RSRSAKLR
Sbjct: 257 REDREIKHLFREWVREGWG--------------RLLQSKPVLPGKAEIEHNPRSRSAKLR 302

Query: 313 A 313
            
Sbjct: 303 V 303


>gi|256372032|ref|YP_003109856.1| S-adenosyl-methyltransferase MraW [Acidimicrobium ferrooxidans DSM
           10331]
 gi|256008616|gb|ACU54183.1| S-adenosyl-methyltransferase MraW [Acidimicrobium ferrooxidans DSM
           10331]
          Length = 319

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 108/302 (35%), Positives = 171/302 (56%), Gaps = 10/302 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETM 78
           H+PV++ +V+  + P  G+ +LD T G GG++ +    G+  VI LDRDP A+      +
Sbjct: 6   HLPVMVAEVVRAVEPQ-GRRVLDVTVGLGGHAAALLDAGAALVIGLDRDPEALHLAARRL 64

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138
             + ++F   + TF  L   V  + +D V+ DLGVSS+Q+D   RGFSF+ +GPLDMRM 
Sbjct: 65  EAFGDRFEPVRGTFRDLARVVGARRIDAVIADLGVSSLQLDHAQRGFSFRLAGPLDMRMD 124

Query: 139 CSGIS-ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQK 197
               + A+ ++   +   LT +L        A R A AI+         TT+ L+ ++ +
Sbjct: 125 PEAPTSAASLLASLDEDGLTELLRRGEVGPLARRYARAILAAMP----TTTEQLAEVVVE 180

Query: 198 TVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
               S+   R HPAT  FQALR+ VN+E+ +L   L +A +AL+ GG+L V+++HSLEDR
Sbjct: 181 ATPPSRRTTRRHPATLVFQALRLAVNDELGQLTALLPAAFEALEVGGVLAVLTYHSLEDR 240

Query: 257 LVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           LVK+FF     +        P+ +  +V +   ++ VVP+ ++VA N R+RSA+LR   +
Sbjct: 241 LVKRFFE--VAERGGAPRTTPAGSWTSVLERRPRRGVVPSDDEVARNPRARSARLRVARK 298

Query: 317 TV 318
             
Sbjct: 299 LA 300


>gi|325973262|ref|YP_004250326.1| s-adenosyl-methyltransferase MraW [Mycoplasma suis str. Illinois]
 gi|323651864|gb|ADX97946.1| s-adenosyl-methyltransferase MraW [Mycoplasma suis str. Illinois]
          Length = 304

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 85/308 (27%), Positives = 151/308 (49%), Gaps = 11/308 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
            H+PV+L +V      +   + +D TFG GG+S+ F K       +I +D DP  +   +
Sbjct: 1   MHIPVMLREVCENWLSSANGIYIDCTFGCGGHSKEFLKSLGVNSRLIGMDVDPKVIPYAE 60

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSG- 131
           E +     +FS     ++ +++Y     +   DG++FDLG+S++Q+   +R FS+  S  
Sbjct: 61  E-LSSQDSRFSFLNVNYTSMRNYWKTNSLPPADGILFDLGLSTLQLKDEERTFSYNSSSS 119

Query: 132 PLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
            L++R    G S  +++N    K L  I    G   +A R+   I++ R++ P      L
Sbjct: 120 TLELRFGLEGKSVYEILNNYPPKKLNWIFKKYGNISEAERLTQTIIQFRKNTPITEVNQL 179

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             +I+++   +K    +P    FQ+LRI  NNE+    + LR A + LK  G L++++F 
Sbjct: 180 KEIIERSKILNKRKNKNPMKLIFQSLRIECNNELNCFKEALRQAAELLKVNGKLLIITFQ 239

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLED +V ++    S  +            P  F   +   ++P++ ++  N  SRSA+L
Sbjct: 240 SLEDEIVLEWKRQNSSYIKIPE---MGEIIPPRFTLKSNSPLLPSRAEIETNWASRSAEL 296

Query: 312 RAGMRTVE 319
               +T E
Sbjct: 297 WVFTKTRE 304


>gi|58696920|ref|ZP_00372421.1| S-adenosyl-methyltransferase MraW [Wolbachia endosymbiont of
           Drosophila simulans]
 gi|58536850|gb|EAL60058.1| S-adenosyl-methyltransferase MraW [Wolbachia endosymbiont of
           Drosophila simulans]
          Length = 251

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 106/261 (40%), Positives = 153/261 (58%), Gaps = 17/261 (6%)

Query: 60  NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSM 116
            V A+DRD        +    Y ++  LF   FS +++ +      G+DG+VFD+GVSSM
Sbjct: 2   QVYAIDRDETVTKFYDDLSVRYPDRIKLFIEKFSNIKNLLDSNNIEGIDGIVFDIGVSSM 61

Query: 117 QIDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175
           Q+D GDRGFSF   GPLDM M  S  I+AS  VN    +++   +   G E+ + +IA A
Sbjct: 62  QLDNGDRGFSFLHDGPLDMSMDNSSYINASTFVNALREEEIANTIYNYGGERHSRKIARA 121

Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           IV  R+    +TT +L+ +++  V+  K ++I PATR+FQA+RI+VN+E+ EL +G+++A
Sbjct: 122 IVNARKKKTIKTTFELADIVRSVVFRGK-SKIDPATRTFQAIRIWVNDELGELEKGIKAA 180

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295
            + L   G LIVV+FHSLEDR+VK FF                      F  + KKV+  
Sbjct: 181 SEILSENGKLIVVTFHSLEDRIVKTFFKDLCATDC------------KTFSLLNKKVIEA 228

Query: 296 TQEDVAFNRRSRSAKLRAGMR 316
           + E+V+ N RSRSAKLRA  R
Sbjct: 229 SIEEVSANPRSRSAKLRAIQR 249


>gi|327281892|ref|XP_003225679.1| PREDICTED: probable S-adenosyl-L-methionine-dependent
           methyltransferase METT5D1-like [Anolis carolinensis]
          Length = 395

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 123/323 (38%), Positives = 169/323 (52%), Gaps = 38/323 (11%)

Query: 32  LNPAPGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQ 89
           L+    + ILD TFGAGG++++    +M   + ALDRDP A    Q     Y +Q     
Sbjct: 72  LSNRHMECILDMTFGAGGHTKALLQKEMDIKLYALDRDPTAYELAQRLSDSYTQQIQPLL 131

Query: 90  ATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS----CS 140
             FSQL+  +   GV     DGV+ D G SSMQ+D  +RGFS +K GPLDMRM       
Sbjct: 132 GQFSQLEALLTSAGVQPGNLDGVLLDAGCSSMQLDTPERGFSLRKDGPLDMRMDGDRYPD 191

Query: 141 GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVY 200
             +A+DVVN  + + L  IL + GEE+ A +IA AIV+ R   P   TQ L+S++     
Sbjct: 192 MPTAADVVNALDQQALASILRMYGEERHAKKIALAIVQARSVYPITRTQQLASIVAGAFP 251

Query: 201 -----FSK---NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
                  K   +   H AT++FQALRIFVNNE+ EL  GL++AEK LK GG  + +SFHS
Sbjct: 252 DVALYARKDLLHRPTHVATKTFQALRIFVNNELHELYAGLQTAEKFLKPGGRFVALSFHS 311

Query: 253 LEDRLVKKFF-------------------ASRSGKVMAVRHMIPSNAHPAVFQSITKKVV 293
           LEDR++K+F                      R    +       +      + +I KKV+
Sbjct: 312 LEDRIIKRFLLGIDISEKFNLSVRQKIKQMGRDFSELEEEDEFSNGNVNLKWIAIQKKVL 371

Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316
            P  +D+  N R RSAKLR  ++
Sbjct: 372 TPQAKDLQDNPRGRSAKLRGAIK 394


>gi|284931424|gb|ADC31362.1| S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Mycoplasma gallisepticum str. F]
          Length = 313

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 102/306 (33%), Positives = 154/306 (50%), Gaps = 11/306 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQE 76
           H PVLL++VI  L      + LD T G GG+S          + +I  D+D  A++  ++
Sbjct: 9   HYPVLLKEVIENLITIKDGIYLDLTIGFGGHSYNIIKILDQKARLIGFDQDLQAIAHCKQ 68

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
              ++    SL    F  L+ ++       +DG + DLGVSS Q+D  DRGFS+   G L
Sbjct: 69  LFSEF-NNVSLINDNFVNLKKHLQLMQIDKIDGCLIDLGVSSYQLDRADRGFSYHSLGRL 127

Query: 134 DMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  +  + A+ ++  + V +L +I+   GE K   R+  A+ K  +      T ++ 
Sbjct: 128 DMRMDQNKEVDATKLIQNSTVSELVKIMKNYGEIKDPYRVVVALKKAFEKKELN-TLEVV 186

Query: 193 SLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            LI+K V  ++     HPA R FQALRI VNNE+E L + L      L  GG + +++FH
Sbjct: 187 ELIKKHVNKAELYANKHPARRYFQALRIAVNNELEVLEKLLSYLPSYLNKGGKIAIITFH 246

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLE+++VKK F   +         I +           K  + PTQ ++  NRRSRSAKL
Sbjct: 247 SLEEKIVKKVFRHLASTSSLNNLPINNELLKKYHNHFNKG-LSPTQSELETNRRSRSAKL 305

Query: 312 RAGMRT 317
               + 
Sbjct: 306 FVLEKI 311


>gi|150391505|ref|YP_001321554.1| S-adenosyl-methyltransferase MraW [Alkaliphilus metalliredigens
           QYMF]
 gi|263433292|sp|A6TUM7|RSMH2_ALKMQ RecName: Full=Ribosomal RNA small subunit methyltransferase H 2;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase 2;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH 2
 gi|149951367|gb|ABR49895.1| S-adenosyl-methyltransferase MraW [Alkaliphilus metalliredigens
           QYMF]
          Length = 349

 Score =  283 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 102/331 (30%), Positives = 158/331 (47%), Gaps = 31/331 (9%)

Query: 3   SKSCKTMSSAIHH---TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG- 58
            K    ++  I       G H  + + +++  L   PG+  LDAT G GG++    K   
Sbjct: 32  DKYADAVAKVIQKGSTPAGMHRSICVNEILEFLKITPGQTGLDATLGYGGHTLEMLKRLN 91

Query: 59  --SNVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLG 112
              ++ A+D D   +   QE +       E  ++ Q  FS +     + G ++ V+ DLG
Sbjct: 92  SKGHLYAIDVDSIELPRTQERLEGLGYGSEILTIKQMNFSNIDQIALESGPLNFVLADLG 151

Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASR 171
           VSSMQID  +RGFSF+  GPLD+R++ + GISA+  +   +  +L  +L    +E  ++ 
Sbjct: 152 VSSMQIDNPERGFSFKSEGPLDLRLNPNRGISAAARLKTISQDELQGMLLENADEPNSAA 211

Query: 172 IAHAIVKRRQSA-PFQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEI 225
           I+ AI+   +      TT  L  +I+  + F      K+       R FQALRI VN+E 
Sbjct: 212 ISRAIISEIKKGIDISTTTQLQQIIKDALKFIPQNTRKDEIKKSCQRCFQALRIDVNDEF 271

Query: 226 EELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF 285
           E L + L      L  GG + ++SFHS EDRLVKK F                     V+
Sbjct: 272 EMLYEFLEKLPATLAEGGRVAILSFHSGEDRLVKKSFQRF--------------FREGVY 317

Query: 286 QSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           + I    + P+ E+   N R+RSAKLR  ++
Sbjct: 318 REIAPNFIRPSTEECNTNGRARSAKLRWAIK 348


>gi|297807119|ref|XP_002871443.1| mraW methylase family protein [Arabidopsis lyrata subsp. lyrata]
 gi|297317280|gb|EFH47702.1| mraW methylase family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 434

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 109/339 (32%), Positives = 163/339 (48%), Gaps = 42/339 (12%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCGQE 76
           HVPV+L +V+ + +    +  +D T GA G+S S  +  S +   + +D DP A   G  
Sbjct: 95  HVPVMLGEVLDIFSSVRLRSFVDCTLGAAGHSSSIIQSHSELKHFVGMDVDPVARKLGHF 154

Query: 77  TMRDYK----------EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126
            +              + F   ++  +  Q  + D GVDG++ DLG+SSMQ++   RGFS
Sbjct: 155 HIDSLMHPTLKASIVLKNFKYIKSVVADTQPELLDVGVDGILMDLGMSSMQVNNPQRGFS 214

Query: 127 FQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
             + GPLDMRM     ++A D+VN     +L R+L   GEE     +   IVK R +   
Sbjct: 215 VLQEGPLDMRMDPQATLTAEDIVNSWPESELGRVLRDYGEESNWHLLQTRIVKARLNGGL 274

Query: 186 QTTQDLSSLIQKTVYFSKNNR---IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
            +T +L  LI+      +  R   I  ATR FQ LRI VN+E++ L   L S+   L  G
Sbjct: 275 HSTGELVDLIRGMSPAGRGGRQGWIKTATRVFQGLRIAVNDELKTLQNSLYSSFDVLGPG 334

Query: 243 GLLIVVSFHSLEDRLVKKFF----------ASRSGKVMAVRHMIPSNAHPAVFQ------ 286
           G L V+SFHSLEDR+VK+ F           +  G  +     I       + +      
Sbjct: 335 GRLAVISFHSLEDRVVKQTFLNILGFQREEINGEGNSVKPERQIEERVEKELKEKEAWIK 394

Query: 287 ---------SITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
                     +TK+ + P++E+   NRR+RSAKLR   +
Sbjct: 395 QTVIGSKGVILTKRPITPSEEEERLNRRARSAKLRVIQK 433


>gi|297268190|ref|XP_002799639.1| PREDICTED: putative S-adenosyl-L-methionine-dependent
           methyltransferase METT5D1-like isoform 2 [Macaca
           mulatta]
          Length = 452

 Score =  283 bits (724), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 118/345 (34%), Positives = 170/345 (49%), Gaps = 71/345 (20%)

Query: 20  HVPVLLEKVIALLNPAPGKV---------------------------------ILDATFG 46
           H+PV++++V+  L+P  G++                                  LD TFG
Sbjct: 72  HIPVMVDEVVHCLSPQKGQISFMCIVLFAYPNNLVMWTRMVHLHTRKLRLREIFLDMTFG 131

Query: 47  AGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV 104
           +GG++++  +  S+  + ALDRDP A +  +     Y +Q       FSQ +  +   GV
Sbjct: 132 SGGHTKAILQKESDIVLYALDRDPTAYALAEHLSELYPKQIRAVLGQFSQAEALLTKAGV 191

Query: 105 -----DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS----CSGISASDVVNQANVKD 155
                DGV+ DLG SSMQ+D  +RGFS +K GPLDMRM         +A+DVVN  +   
Sbjct: 192 QPGTFDGVLMDLGCSSMQLDTPERGFSLRKDGPLDMRMDGGRYPDMPTAADVVNALDQPA 251

Query: 156 LTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSK--------NNRI 207
           L  IL   GEEK A +IA AIV+ R   P   TQ L+S++      S             
Sbjct: 252 LASILRTYGEEKHARKIASAIVQARSIYPITRTQQLASIVAGAFPPSAIYARKDLLQRST 311

Query: 208 HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF----- 262
           H AT++FQALRIFVNNE+ EL  GL++A+K L+ GG L+ +SFHSLEDR++K+F      
Sbjct: 312 HIATKTFQALRIFVNNELNELYTGLKTAQKFLRPGGRLVALSFHSLEDRIIKRFLLGISM 371

Query: 263 --------------ASRSGKVMAVRHMIPSNAHPAVFQSITKKVV 293
                          S+ G        +     P +++ I KKV+
Sbjct: 372 TERFNLSVRQQVMKTSQLGSGHENTEEVSMRRAPLMWELIHKKVL 416


>gi|317498357|ref|ZP_07956653.1| MraW methylase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316894362|gb|EFV16548.1| MraW methylase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 398

 Score =  282 bits (722), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 95/329 (28%), Positives = 162/329 (49%), Gaps = 28/329 (8%)

Query: 3   SKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---S 59
             + + + S      G H+ + +++++   +  PG+  LDAT G GG++R   +      
Sbjct: 83  GDTIQKVISKGSTPAGMHISICVKEILEFFDIQPGQKGLDATLGYGGHTRKMLEKLQGKG 142

Query: 60  NVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSS 115
           ++ ALD DP      ++ + D     +  ++    F+ +     + G  D ++ DLGVSS
Sbjct: 143 HIYALDVDPIESVKTEKRLHDAGFGEDILTIKHINFANIDQVAEEVGPFDFILADLGVSS 202

Query: 116 MQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAH 174
           MQID  +RGFS++  GPLD+R++   GISA++ +      +   +L    +E  A +IA 
Sbjct: 203 MQIDNPERGFSYKFEGPLDLRLNPEKGISAAERLEDITKAEFEGMLIENADEPYAKQIAK 262

Query: 175 AIVK-RRQSAPFQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEEL 228
             V   ++    +TT DL  +I++ + F      K        R+FQALRI VN+E E L
Sbjct: 263 ETVATMKRGKKIKTTTDLKDVIERALNFLPEKERKEAVKKSCQRTFQALRIDVNSEFEVL 322

Query: 229 AQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI 288
            + L     AL  GG + +++FHS EDRLVK  F                     ++  +
Sbjct: 323 EELLEKLPDALAPGGKVAILTFHSGEDRLVKHAFK--------------YGKKVGIYSDV 368

Query: 289 TKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
            K V+ P++E+ A N R++S K+R  ++ 
Sbjct: 369 AKDVIRPSKEECAQNGRAKSTKMRWAIKV 397


>gi|302518535|ref|ZP_07270877.1| LOW QUALITY PROTEIN: MraW methylase [Streptomyces sp. SPB78]
 gi|302427430|gb|EFK99245.1| LOW QUALITY PROTEIN: MraW methylase [Streptomyces sp. SPB78]
          Length = 293

 Score =  282 bits (721), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 103/263 (39%), Positives = 152/263 (57%), Gaps = 10/263 (3%)

Query: 2   ESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPA---PGKVILDATFGAGGYSRSFCKMG 58
           +  +    + A     G HVPV+L + + LL PA   PG V++D T G GG+S +     
Sbjct: 13  DGTAQDPPAPAAGTAEGRHVPVMLRRCLDLLGPALAEPGAVVVDCTLGLGGHSEALLSTF 72

Query: 59  S--NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGV 113
               ++ALDRD  A+    E +  + E+  L  A + +L D +   G   V G++FDLGV
Sbjct: 73  PAARLVALDRDKEALRLAGERLAPFGERAMLAHAVYDELPDVLDRLGIPRVQGILFDLGV 132

Query: 114 SSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRI 172
           SSMQ+D  DRGF++ +  PLDMRM  + G+SA++V+N     +L RIL   GEEKQA RI
Sbjct: 133 SSMQLDEADRGFAYAQDAPLDMRMDQTAGLSAAEVLNTYPPGELVRILRTYGEEKQARRI 192

Query: 173 AHAIVKRRQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQG 231
             A+V+ R+  PF  +  L  LI++ +   +K    +PA R+FQALRI VN E+  L + 
Sbjct: 193 VSAVVREREKEPFARSARLVELIREALPQAAKRTGGNPAKRTFQALRIEVNGELSVLERA 252

Query: 232 LRSAEKALKAGGLLIVVSFHSLE 254
           + +A   L  GG + V+++HSLE
Sbjct: 253 IPAAVNTLAVGGRIAVLAYHSLE 275


>gi|315606646|ref|ZP_07881657.1| S-adenosyl-methyltransferase MraW [Prevotella buccae ATCC 33574]
 gi|315251656|gb|EFU31634.1| S-adenosyl-methyltransferase MraW [Prevotella buccae ATCC 33574]
          Length = 380

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 88/236 (37%), Positives = 131/236 (55%), Gaps = 8/236 (3%)

Query: 85  FSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-S 140
           F+  ++ F  L++++   GVD   G++ DLGVSS   D   RGFSF+   PLDMRM+   
Sbjct: 148 FTFVRSNFRYLKNWMRYYGVDHIDGLLADLGVSSHHFDDETRGFSFRFDAPLDMRMNKRG 207

Query: 141 GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVY 200
           G +A+D+VN+ +   L  +  + GE K + RIA A+VK R     +TTQD    ++    
Sbjct: 208 GRTAADIVNEYDENRLADVFYLYGELKNSRRIAAALVKARAQGRIETTQDFVQAVEPL-- 265

Query: 201 FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKK 260
           F +        + FQALRI VNNE+  L + L +A + LK GG L V+++HSLEDR+VK 
Sbjct: 266 FRREREKKDMAKLFQALRIEVNNEMTALKEMLLAATELLKPGGRLSVITYHSLEDRIVKN 325

Query: 261 FFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
              + + +    +        P  F+ +  KV+VP  ++   N RSRSAKLR   +
Sbjct: 326 VMKAGNPEGKVAQDFFGRIETP--FRPVNNKVIVPEDDEQQRNPRSRSAKLRIAEK 379



 Score = 96.0 bits (238), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFA 70
          HVPVLL++ +  LN  PG + +D TFG GG+SR        G+++ + D+D  A
Sbjct: 9  HVPVLLKESVDGLNIRPGGIYVDVTFGGGGHSREILSRLTGGAHLYSFDQDADA 62


>gi|196231370|ref|ZP_03130229.1| S-adenosyl-methyltransferase MraW [Chthoniobacter flavus Ellin428]
 gi|196224706|gb|EDY19217.1| S-adenosyl-methyltransferase MraW [Chthoniobacter flavus Ellin428]
          Length = 351

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 100/316 (31%), Positives = 159/316 (50%), Gaps = 26/316 (8%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72
             G H P+++ +++ +L P PG+  +DAT G GG+SR   +    G  +I LD DP  + 
Sbjct: 49  PAGMHRPIMVSEIMEILAPKPGEFAVDATLGYGGHSREILQRITPGGRLIGLDVDPLELP 108

Query: 73  CGQETMRDYK---EQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFS 126
             +  +R      + F+  +  ++ L   +  +   G D ++ DLG+SSMQID   RGF+
Sbjct: 109 KTEARLRALGFGPDVFTAQRVNYAGLPALIAREAPEGADIILADLGLSSMQIDNPSRGFT 168

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           F+  GPLD+RM+   G  AS ++   N   L ++L    +E  A+ +  AI+  +   P 
Sbjct: 169 FKVEGPLDLRMNPERGQPASALLATINAAKLEQLLTENADEPNAALLTRAILDAQARTPI 228

Query: 186 QTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
            TT  L+++I+  +    +        R FQALRI VN+E   L   LR   + L+ GG 
Sbjct: 229 TTTTALATVIRTALASLPRIEPNDTIRRVFQALRIAVNDEFSALDTFLRHLPQCLRPGGR 288

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           + +++FHS EDR VK  F               +     ++  I + V+ P  E++  N 
Sbjct: 289 IAILTFHSGEDRRVKHAFK--------------TGLQEGLYSEIARDVLRPGAEELRANP 334

Query: 305 RSRSAKLRAGM-RTVE 319
           RS SAKLR  + R VE
Sbjct: 335 RSASAKLRWAVGRKVE 350


>gi|237750751|ref|ZP_04581231.1| S-adenosyl-methyltransferase MraW [Helicobacter bilis ATCC 43879]
 gi|229373841|gb|EEO24232.1| S-adenosyl-methyltransferase MraW [Helicobacter bilis ATCC 43879]
          Length = 374

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 103/323 (31%), Positives = 163/323 (50%), Gaps = 34/323 (10%)

Query: 19  DHVPVLLEKVIALLN----------------PAPGKVILDATFGAGGYSRSFCKMGSNV- 61
            H+PVLLE ++   +                    +V++D T G GG SR+  +  SN+ 
Sbjct: 56  PHIPVLLEHMLDTFDRIFLSTHSHYIAKKSLIKNKEVLIDCTLGFGGMSRALLERYSNLH 115

Query: 62  -IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL-QDYVPDKGVDG-----VVFDLGVS 114
            I +DRD +A+   +E+M  +K++F      F+ L    + +   +G     ++ D+GVS
Sbjct: 116 IIGIDRDSYALEYNRESMAKFKDRFQTRHGDFATLLPQIIKEIEANGDHLCGILADIGVS 175

Query: 115 SMQIDCGDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIA 173
           S Q+D  DRGFSF  +  LDMRM     + A  +VN  N  +L  I    GE ++  ++ 
Sbjct: 176 SYQLDSIDRGFSFHSN-KLDMRMDRTQSLDADMIVNTYNKYELEEIFKNYGEIREYKKLV 234

Query: 174 HAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLR 233
           + IV+ RQ     T   L ++    +      +IHPAT  +QALRI VN+E+ +L   L 
Sbjct: 235 NLIVQERQRGRI-TADSLQNI---ALKLHSKAKIHPATLIYQALRIAVNDELGQLKSLLH 290

Query: 234 SAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMA--VRHMIPSNAHPAVFQSITKK 291
           S +   +   L  V+SFHSLEDR++K+ F   +   +            + A   S+ KK
Sbjct: 291 SCQNLHEV--LFCVISFHSLEDRMIKESFKQFAKSCICDTTSFKCVCGNNHAKGFSLYKK 348

Query: 292 VVVPTQEDVAFNRRSRSAKLRAG 314
            ++   +++A N+RSRSAKLRA 
Sbjct: 349 PLIADSKEIAQNKRSRSAKLRAF 371


>gi|85714965|ref|ZP_01045950.1| methyltransferase [Nitrobacter sp. Nb-311A]
 gi|85698162|gb|EAQ36034.1| methyltransferase [Nitrobacter sp. Nb-311A]
          Length = 419

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 127/298 (42%), Positives = 175/298 (58%), Gaps = 5/298 (1%)

Query: 11  SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPF 69
           + +      HVPVL  + +A+L    G V +DATFGAGGYSR+      + VI +DRDP 
Sbjct: 86  AIMTEPPVRHVPVLGGEAVAMLALRAGGVYVDATFGAGGYSRAILATADTRVIGIDRDPA 145

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV---SSMQIDCGDRGFS 126
           A++ G   + +   + +L +  FS L      + V  V   +     SSMQ+D  DRGFS
Sbjct: 146 AIAGGSALVEESGGRLTLVEDRFSNLASVCAAQDVAVVDGVVMDVGVSSMQLDEADRGFS 205

Query: 127 FQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           F+  GPLDMRMS  G +A+DVV  A+  DL  I+ I GEE+++  +A AIV  R+  P  
Sbjct: 206 FRLDGPLDMRMSGHGPTAADVVAHASETDLADIIYIFGEERRSRAVARAIVAARRHGPIA 265

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           TT+ L+ ++ K V  +K + IHPATR+FQALRIFVN E++EL   L +AE+ LK GG L 
Sbjct: 266 TTRALADVVSKVV-RAKPHEIHPATRTFQALRIFVNEELDELVAALAAAERVLKPGGRLA 324

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           VVSFHSLEDR+VK F A R  +    RH          F  +TK+ + P +E++  N 
Sbjct: 325 VVSFHSLEDRIVKNFLARRGKRGGGSRHRPEIEQGSPSFAILTKRPLTPGEEEMHANP 382


>gi|288925513|ref|ZP_06419446.1| S-adenosyl-methyltransferase MraW [Prevotella buccae D17]
 gi|288337729|gb|EFC76082.1| S-adenosyl-methyltransferase MraW [Prevotella buccae D17]
          Length = 393

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 88/236 (37%), Positives = 131/236 (55%), Gaps = 8/236 (3%)

Query: 85  FSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-S 140
           F+  ++ F  L++++   GVD   G++ DLGVSS   D   RGFSF+   PLDMRM+   
Sbjct: 161 FTFVRSNFRYLKNWMRYYGVDHIDGLLADLGVSSHHFDDETRGFSFRFDAPLDMRMNKRG 220

Query: 141 GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVY 200
           G +A+D+VN+ +   L  +  + GE K + RIA A+VK R     +TTQD    ++    
Sbjct: 221 GRTAADIVNEYDENRLADVFYLYGELKNSRRIAAALVKARAQGRIETTQDFVQAVEPL-- 278

Query: 201 FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKK 260
           F +        + FQALRI VNNE+  L + L +A + LK GG L V+++HSLEDR+VK 
Sbjct: 279 FRREREKKDLAKLFQALRIEVNNEMTALKEMLLAATELLKPGGRLSVITYHSLEDRIVKN 338

Query: 261 FFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
              + + +    +        P  F+ +  KV+VP  ++   N RSRSAKLR   +
Sbjct: 339 VMKAGNPEGKVAQDFFGRIETP--FRPVNNKVIVPEDDEQQRNPRSRSAKLRIAEK 392



 Score = 89.9 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 3/52 (5%)

Query: 22 PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFA 70
          PVLL++ +  LN  PG + +D TFG GG+SR        G+++ + D+D  A
Sbjct: 2  PVLLKESVDGLNIRPGGIYVDVTFGGGGHSREILSRLTGGAHLYSFDQDADA 53


>gi|310658142|ref|YP_003935863.1| methyltransferase [Clostridium sticklandii DSM 519]
 gi|308824920|emb|CBH20958.1| Methyltransferase [Clostridium sticklandii]
          Length = 348

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 99/331 (29%), Positives = 159/331 (48%), Gaps = 31/331 (9%)

Query: 3   SKSCKTMSSAI---HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS 59
            K    +  AI   +   G H+ + + +++      PG++  DAT G GG++    K   
Sbjct: 31  EKYSDEIEKAIQRGNTPAGMHISIAVNEILEFFQIKPGQIGFDATLGYGGHTLEMLKCLE 90

Query: 60  N---VIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLG 112
           +   + A D DP      +  +       +   +    FS++     + G  D ++ DLG
Sbjct: 91  HQGCIFATDVDPIESQKTKARLESLGYGEDMLKIRNMNFSEIDKISKEAGKFDFILADLG 150

Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASR 171
           VSSMQID  DRGF++++ GPLD+R++   GISA++ + + N  ++  +L    +E  A  
Sbjct: 151 VSSMQIDNPDRGFTYKREGPLDLRLNPEKGISAAERLKEMNQYEIEGMLLENSDEPHAEI 210

Query: 172 IAHAIVKRRQSA-PFQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEI 225
           I+ AI+KR +     +TT  L  LI+ T+ F      +        R FQALRI VN E 
Sbjct: 211 ISKAIIKRFEEGEKIETTSQLRDLIEDTLSFIPSKDREQEIKKTCQRVFQALRIDVNQEF 270

Query: 226 EELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF 285
           E L   L      L   G ++++SFHS EDRLVKK F +   + +              +
Sbjct: 271 EVLYDFLEKLPAVLAPNGKVLIMSFHSGEDRLVKKSFKNYYREGI--------------Y 316

Query: 286 QSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
             I+  V+ P+ E+   N R+RS K+R  +R
Sbjct: 317 SEISTDVIRPSAEECNRNPRARSTKIRFAIR 347


>gi|251772190|gb|EES52760.1| S-adenosyl-methyltransferase MraW [Leptospirillum
           ferrodiazotrophum]
          Length = 305

 Score =  280 bits (716), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 106/301 (35%), Positives = 164/301 (54%), Gaps = 23/301 (7%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H PV+L + +  L+  PG+  +DA  G GG++R     G +V+A+DRD  AV   +E + 
Sbjct: 12  HRPVMLAESMEWLDVRPGQWYVDANLGGGGHTREILARGGSVVAIDRDKGAVLAAREHLL 71

Query: 80  D-YKEQFSLFQATFSQLQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
             Y ++  +       +   V  +G  V G++FDLG S++Q +  +RG SF + GPLDMR
Sbjct: 72  PLYPDRLRIIHGNNRNVASLVRQEGQHVSGILFDLGWSTIQGEDPERGLSFTEEGPLDMR 131

Query: 137 MSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF-QTTQDLSSL 194
           +      +A D++   +  +L R+L   G+E  A+ IA A+V+ R+     +TT  L++ 
Sbjct: 132 LDTEQKETAEDLLESLSESELERVLSE-GDEPLAAPIARALVQARREGRLPRTTTALAAF 190

Query: 195 IQKTVYFS--KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL-KAGGLLIVVSFH 251
           +    Y    + +R HPATR F ALRI VN E E L + L  A + L   GG LIV+SFH
Sbjct: 191 VSGVYYRKGFRRSRRHPATRVFMALRIRVNREYENLEESLSGARELLSATGGRLIVLSFH 250

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           S EDR+VK+ F    G+  A                + ++ +VP  E+V+ N R+RSA++
Sbjct: 251 SGEDRIVKRCFRLWVGEGEAA--------------FLFRRSLVPGDEEVSLNPRARSARM 296

Query: 312 R 312
           R
Sbjct: 297 R 297


>gi|54020186|ref|YP_115916.1| hypothetical protein mhp406 [Mycoplasma hyopneumoniae 232]
 gi|76363868|sp|Q600P9|RSMH_MYCH2 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|53987359|gb|AAV27560.1| conserved hypothetical protein [Mycoplasma hyopneumoniae 232]
          Length = 296

 Score =  280 bits (716), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 104/300 (34%), Positives = 152/300 (50%), Gaps = 16/300 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQE 76
            HVPVLLE++I  L   P    +D T G GG+S +  +      ++  D+D  A+   + 
Sbjct: 1   MHVPVLLEELILALEINPKGFYVDLTLGRGGHSLAILEKISNGKLVVFDKDQDALDQTRP 60

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            +   K+   +  + FS+   Y+ + G   VDG + DLGVSS QID   RGFS+ K G L
Sbjct: 61  KLLALKQNIEIIWSDFSRFDFYLENLGIQFVDGFIIDLGVSSPQIDDPARGFSYSKDGNL 120

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM  S  +SA  V+N+   + L  I    G+   A  IA AI+  R   P +TT +L 
Sbjct: 121 DMRMDKSQKLSAFIVLNEYPYEKLVEIFFKYGQIPYAREIARAIINSR---PLKTTFELV 177

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           +L++K +      + +     FQA+RI VNNE++ L + L    K LK G  + +++FHS
Sbjct: 178 NLVKKVIPALVLVKKNFIKNVFQAVRIEVNNELDSLQKLLEKLPKFLKQGSKVAIITFHS 237

Query: 253 LEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           LEDR+VKK F     K                    + KV  P   ++  N R++SAKLR
Sbjct: 238 LEDRIVKKAFLDLIRKD-------KLEFFQKGLPKFSMKVFRPKANELKSNPRAKSAKLR 290


>gi|167768055|ref|ZP_02440108.1| hypothetical protein CLOSS21_02599 [Clostridium sp. SS2/1]
 gi|167710384|gb|EDS20963.1| hypothetical protein CLOSS21_02599 [Clostridium sp. SS2/1]
          Length = 352

 Score =  280 bits (716), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 94/329 (28%), Positives = 161/329 (48%), Gaps = 28/329 (8%)

Query: 3   SKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---S 59
             + + + S      G H+ + +++++   +  PG+  LDAT G GG++R   +      
Sbjct: 37  GDTIQKVISKGSTPAGMHISICVKEILEFFDIQPGQKGLDATLGYGGHTRKMLEKLQGKG 96

Query: 60  NVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSS 115
           ++ ALD DP      ++ + D     +  ++    F+ +     + G  D ++ DLGVSS
Sbjct: 97  HIYALDVDPIESVKTEKRLHDAGFGEDILTIKHINFANIDQVAEEVGPFDFILADLGVSS 156

Query: 116 MQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAH 174
           MQID  +RGFS++  GPLD+R++   GISA++ +      +   +L    +E  A +IA 
Sbjct: 157 MQIDNPERGFSYKFEGPLDLRLNPEKGISAAERLEDITKAEFEGMLIENADEPYAKQIAK 216

Query: 175 AIVK-RRQSAPFQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEEL 228
             V   ++    +TT DL  +I++ + F      K        R+FQALRI VN+E E L
Sbjct: 217 ETVATMKRGKKIKTTTDLKDVIERALNFLPEKERKEAVKKSCQRTFQALRIDVNSEFEVL 276

Query: 229 AQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI 288
            + L     AL  GG + +++FHS EDRLVK  F                     ++  +
Sbjct: 277 EELLEKLPDALAPGGKVAILTFHSGEDRLVKHAFK--------------YGKKVGIYSDV 322

Query: 289 TKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
            K V+ P++E+   N R++S K+R  ++ 
Sbjct: 323 AKDVIRPSKEECTQNGRAKSTKMRWAIKV 351


>gi|123965435|ref|YP_001010516.1| S-adenosylmethionine-dependent methyltransferase [Prochlorococcus
           marinus str. MIT 9515]
 gi|262824968|sp|A2BUE8|RSMH_PROM5 RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|123199801|gb|ABM71409.1| Predicted S-adenosylmethionine-dependent methyltransferase
           [Prochlorococcus marinus str. MIT 9515]
          Length = 300

 Score =  280 bits (716), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 106/316 (33%), Positives = 172/316 (54%), Gaps = 30/316 (9%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLN----PAPGK-VILDATFGAGGYSRSFCKMGSNV--I 62
           +   + ++ +H  V+ ++++  ++     +  K   +DAT G GG+S    K   ++  I
Sbjct: 3   TDLSNSSLFNHKSVMTDEILYSIDQYPFISDNKLTAIDATLGGGGHSYQLLKKYPDLKII 62

Query: 63  ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGD 122
            LD DP A       + ++K +  +  + FS  +   P + V  V+ DLGV+S QID  +
Sbjct: 63  GLDHDPIARESALNKLEEFKSRIEIIPSNFSNFE---PKEKVSFVIADLGVNSNQIDSPE 119

Query: 123 RGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-R 180
           RGFSFQK GPLDMRM+    ++A +++   + KDL  ++   G+E+ + +I+  I K  +
Sbjct: 120 RGFSFQKDGPLDMRMNPLIKMNAENLIETLSEKDLADLIFKFGDERLSRKISRKIKKDLK 179

Query: 181 QSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
           +   +  T+DL+  I        +  +IHPATR+FQALRI VNNEIE L + L+ A   L
Sbjct: 180 EKGKYSGTKDLAYSIAGCFPPKQRYRKIHPATRTFQALRIAVNNEIEALEKFLKIAPDWL 239

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
             GG++ ++SFHS+EDRLVK  F                       +++TKK + P +++
Sbjct: 240 LTGGIISIISFHSIEDRLVKNSFKGDY-----------------RLKNLTKKPITPNKKE 282

Query: 300 VAFNRRSRSAKLRAGM 315
           +  N+RSRSAKLR   
Sbjct: 283 IENNKRSRSAKLRIAQ 298


>gi|291276974|ref|YP_003516746.1| putative S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Helicobacter mustelae 12198]
 gi|290964168|emb|CBG40013.1| putative S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Helicobacter mustelae 12198]
          Length = 303

 Score =  279 bits (715), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 95/306 (31%), Positives = 160/306 (52%), Gaps = 16/306 (5%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCG 74
              H+PVLL +V+ +       +I+D T G GG+S++  +      +I +D+D  A +  
Sbjct: 3   TSPHIPVLLHEVLDIFKDIKEGIIIDCTLGFGGHSKALLEQNQSIRIIGIDKDKDARAYA 62

Query: 75  QETMRDYKEQFSLFQATFS-QLQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            + +  +KE+F    + F  Q++  +   G  + GV+ D+GVSS Q+D   +GF F+   
Sbjct: 63  TKLLSPFKERFCCVASGFGEQIEPLIAQYGREIKGVLADIGVSSYQLDTPKKGFGFESEV 122

Query: 132 PLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
            LDMRM     ISA  ++N  +   L R+    GE +++ ++A  + + R    F   + 
Sbjct: 123 -LDMRMDNDAHISAKTILNHYSAFALERVFREYGELRESKKLAQLLSQERTRTDFGDPKT 181

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250
            ++ ++      +N +I P    +QALRI VN E+EEL + L  A+K       L V++F
Sbjct: 182 FNAFLKAHF---RNPKILPL--VYQALRIEVNGELEELERLLLHAQKL--KDARLCVITF 234

Query: 251 HSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           HSLEDR++K+   S +   +     +      H      +TKK ++P+QE++  N RSRS
Sbjct: 235 HSLEDRILKQALKSYTKSCICPLEALKCTCGNHHQKGVLLTKKPIIPSQEEIKRNPRSRS 294

Query: 309 AKLRAG 314
           AK+RA 
Sbjct: 295 AKMRAF 300


>gi|313106950|ref|ZP_07793153.1| putative methyltransferase [Pseudomonas aeruginosa 39016]
 gi|310879655|gb|EFQ38249.1| putative methyltransferase [Pseudomonas aeruginosa 39016]
          Length = 247

 Score =  279 bits (714), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 100/247 (40%), Positives = 146/247 (59%), Gaps = 10/247 (4%)

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           M     +F + Q +F++L D V  +G    VDGV+ DLGVSS Q+D  +RGFSF   GPL
Sbjct: 1   MAAEDGRFVIVQRSFAELGDEVRARGLEGRVDGVLLDLGVSSPQLDDPERGFSFLNDGPL 60

Query: 134 DMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMRM+   GISA++ +  A  +++ R+    GEE+ A R+A AIV+RRQ  PF+ T DL+
Sbjct: 61  DMRMNPGQGISAAEFIANAAEEEIARVFKEYGEERFAKRMARAIVQRRQERPFERTADLA 120

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            +I       +  + +PATR+FQ LRI VNNE+ +L +GL +A ++L  GG L+V+SFHS
Sbjct: 121 EVITVANPAWEKGK-NPATRAFQGLRIHVNNELGDLERGLDAALESLAVGGRLVVISFHS 179

Query: 253 LEDRLVKKFFASRSG---KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           LEDR+VK F    +      +     I S       + +  K    ++E++  N RSRSA
Sbjct: 180 LEDRIVKLFMRKHAKGEADNLPRDLPIRSKVFEPRLKLL-GKPQYASEEELKANPRSRSA 238

Query: 310 KLRAGMR 316
            +R   +
Sbjct: 239 VMRVAEK 245


>gi|325106882|ref|YP_004267950.1| ribosomal RNA small subunit methyltransferase H [Planctomyces
           brasiliensis DSM 5305]
 gi|324967150|gb|ADY57928.1| Ribosomal RNA small subunit methyltransferase H [Planctomyces
           brasiliensis DSM 5305]
          Length = 307

 Score =  278 bits (713), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 114/307 (37%), Positives = 163/307 (53%), Gaps = 30/307 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H PVLL + I  +   PG  ++D T GA G+S    K    G  +I LDRDP  ++    
Sbjct: 9   HRPVLLRETIQGMELKPGMTVIDGTVGAAGHSSEIWKRIQPGGRLIGLDRDPEMLARSSC 68

Query: 77  TMRDYKEQFSLFQATFSQ---LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
            + D  +   L  A++     + +++  + VD ++ DLG+SS Q+    RGF F   G L
Sbjct: 69  RLGDSAD---LIHASYLDANGVLEHLGVEKVDRLLVDLGLSSDQLADDQRGFGFATEGQL 125

Query: 134 DMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           DMR     G      +N+A+V ++T++L   GEE QA++IA  +V  R+S P  +   L 
Sbjct: 126 DMRFDMTQGKPVHHWLNKADVAEITKVLSEYGEEPQAAQIAAKVVDARRSQPITSVAALR 185

Query: 193 SLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLR-SAEKALKAGGLLIVVS 249
            +I+K          + HPATR+FQALRIF N E+E L + L  +A   LK GGLL V++
Sbjct: 186 EIIEKVAGGRGRAAGKSHPATRTFQALRIFANAELEHLQRFLTITAPYVLKPGGLLAVIT 245

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSA 309
           FHSLEDRL K+  A R                  V+   +KK + PT  ++  N RSRSA
Sbjct: 246 FHSLEDRLTKQALADRE-----------------VWADSSKKPIGPTPLEIKMNPRSRSA 288

Query: 310 KLRAGMR 316
           KLR G+R
Sbjct: 289 KLRIGIR 295


>gi|291561054|emb|CBL39854.1| S-adenosyl-methyltransferase MraW [butyrate-producing bacterium
           SSC/2]
          Length = 352

 Score =  278 bits (713), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 96/329 (29%), Positives = 161/329 (48%), Gaps = 28/329 (8%)

Query: 3   SKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---S 59
             + + + S      G H+ + +++++   +  PG+  LDAT G GG++R   +      
Sbjct: 37  GDTIQKVISKGSTPAGMHISICVKEILEFFDIQPGQKGLDATLGYGGHTRKMLEKLQGKG 96

Query: 60  NVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSS 115
           ++ ALD DP      ++ + D     +  ++    F+ +     + G  D ++ DLGVSS
Sbjct: 97  HIYALDVDPIESVKTEKRLHDAGFGEDILTIKHINFANIDQVAEEVGPFDFILADLGVSS 156

Query: 116 MQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAH 174
           MQID  +RGFS++  GPLD+R++   GISA++ +      +   +L    +E  A +IA 
Sbjct: 157 MQIDNPERGFSYKFEGPLDLRLNPEKGISAAERLEDITKAEFEGMLIENADEPYAKQIAK 216

Query: 175 AIVK-RRQSAPFQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEEL 228
             V   ++    +TT DL  +I++ + F      K        R+FQALRI VN+E E L
Sbjct: 217 ETVATMKRGKKIKTTTDLKDVIERALNFLPEKERKEAVKKSCQRTFQALRIDVNSEFEVL 276

Query: 229 AQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI 288
            + L     AL  GG + ++ FHS EDRLVK  F                     ++  I
Sbjct: 277 EELLEKLPDALAPGGKVAILIFHSGEDRLVKHAFK--------------YGKKAGIYSDI 322

Query: 289 TKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
            K V+ P++E+ A N R++S K+R  ++ 
Sbjct: 323 AKDVIRPSKEECAQNGRAKSTKMRWAIKV 351


>gi|325182849|emb|CCA17304.1| SadenosylLmethioninedependent methyltransferase mraWlike protein
           putative [Albugo laibachii Nc14]
          Length = 365

 Score =  278 bits (711), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 105/333 (31%), Positives = 174/333 (52%), Gaps = 36/333 (10%)

Query: 20  HVPVLLEKVIALLNPAPGKV---ILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCG 74
           HVPVL++ V  LL     KV    +DAT G  G+++   +   N+    +DRDP  +S  
Sbjct: 31  HVPVLIKSVTKLLVSEEMKVPRYFVDATVGCAGHAQKILESDPNIRMLCIDRDPEVLSIA 90

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            + ++ +  +      +++ L++++   G    V G++ DLGV+S+  D  +RGFS+ + 
Sbjct: 91  TDNLKKFTSRVKFVNGSYADLENHLKVSGFPSEVSGILVDLGVNSLHYDKPERGFSWLRD 150

Query: 131 GPLDMRMSCSGIS---ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS----- 182
           GPL+MR   S  +   A+D++  ++  +LTRI    GE K A   A AIV++R++     
Sbjct: 151 GPLNMRFDESDSTIDCAADILQTSSEVELTRIFREYGELKCAKEYAKAIVRKRETAAPGS 210

Query: 183 APFQTTQDLSSLIQKTVYFSKNNRIHPA--------------TRSFQALRIFVNNEIEEL 228
             F+TT  L   I++     +  R+ P+              T  FQALRI VN E+  +
Sbjct: 211 RAFETTFHLRDAIEEVAAKWRPKRLSPSHASKTNRSSLARPITGCFQALRIQVNKELAHV 270

Query: 229 AQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRS-----GKVMAVRHMIPSNAHPA 283
            +G+      L  G  L+ ++FHSLEDR +K+ F + +     G++ +++  +  +    
Sbjct: 271 HEGVPVLANHLTPGARLVTIAFHSLEDRPIKQIFRTLAHELKDGQLDSLQCDLSKSLRGK 330

Query: 284 VFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
            F+ I KKVV P +E+V  N RSRSA+LR   R
Sbjct: 331 TFRFINKKVVKPCREEVVENPRSRSARLRCLER 363


>gi|33860731|ref|NP_892292.1| hypothetical protein PMM0171 [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|42559450|sp|Q7V3B1|RSMH_PROMP RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|33633673|emb|CAE18630.1| conserved hypothetical protein [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 300

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 108/316 (34%), Positives = 168/316 (53%), Gaps = 30/316 (9%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLN----PAPGK-VILDATFGAGGYSRSFCKMGSNV--I 62
           +     ++ +H  V+ ++++  ++     +  K   +DAT G GG+S    K   ++  I
Sbjct: 3   TDLSDSSLFNHKSVMTDEILVSVDQYPLISDNKLTAIDATLGGGGHSYQLLKKYPDLKII 62

Query: 63  ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGD 122
            LD DPFA       + ++K +  +  + F+  +   P + V  V+ DLGV+S QID   
Sbjct: 63  GLDHDPFARQSAFIKLEEFKSRIEICPSNFANFE---PKEKVSFVIADLGVNSNQIDNPQ 119

Query: 123 RGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ 181
           RGFSFQK GPLDMRM+    ++A D++   N KDL  ++   G+E+ + +I+  I K  Q
Sbjct: 120 RGFSFQKDGPLDMRMNPLLEMNAEDLIETLNEKDLADLIFKFGDERLSRKISRRIKKDLQ 179

Query: 182 SA-PFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKAL 239
               +  T+DL+  I        +  +IHPATR+FQALRI VN EIE L + L  A   L
Sbjct: 180 EKGKYSGTKDLAYSIAGCFPPKQRYRKIHPATRTFQALRIAVNKEIEALERFLELAPNWL 239

Query: 240 KAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQED 299
             GG++ ++SFHS+EDRLVK  F                       +++TKK + P +++
Sbjct: 240 LPGGIISIISFHSIEDRLVKNSFKGDE-----------------RLKNLTKKPITPNEKE 282

Query: 300 VAFNRRSRSAKLRAGM 315
           +  N+RSRSAKLR   
Sbjct: 283 IENNKRSRSAKLRIAQ 298


>gi|42559447|sp|Q7U3X9|RSMH_SYNPX RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
          Length = 296

 Score =  277 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 106/312 (33%), Positives = 160/312 (51%), Gaps = 28/312 (8%)

Query: 13  IHHTIGDHVPVLLEKVIAL--LNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDP 68
           +   +  HVPVL E V+      P    +++DAT G GG+S    +      +I LD+D 
Sbjct: 1   MPAPLFSHVPVLSEAVMDAGRQMPRAEGLLIDATLGGGGHSALMLEQQPGLRLIGLDQDA 60

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
            A +   E +  + ++ ++    F+   +Y P +    V+ DLGVSS Q+D  +RGFSF+
Sbjct: 61  TARAAAAERLAPFGDRVTIVATNFA---EYTPPEPALMVLADLGVSSPQLDVAERGFSFR 117

Query: 129 KSGPLDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ-SAPF 185
             GPLDMRM+    G +A++++++    +L  ++   GEE+ + RIA  I         +
Sbjct: 118 LDGPLDMRMNAVGDGATAAELIDRLEENELADLIYAYGEERLSRRIARRIKADLAVQGAY 177

Query: 186 QTTQDLSSLIQKTVYFSK-NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
             T  L+  +           RIHPATR+FQALRI VN+E+  L + L+ A   L+ GGL
Sbjct: 178 SGTAALAYAVAGCYPPQGTPRRIHPATRTFQALRIAVNDELGVLDRLLQQAPDWLEPGGL 237

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           + ++SFHSLEDR VK  F                       + IT+K VV T+E+   N 
Sbjct: 238 VGIISFHSLEDRRVKTAF-----------------LRDERLERITRKPVVATEEEEEANP 280

Query: 305 RSRSAKLRAGMR 316
           RSRSAK R   +
Sbjct: 281 RSRSAKWRLARK 292


>gi|326792370|ref|YP_004310191.1| ribosomal RNA small subunit methyltransferase H [Clostridium
           lentocellum DSM 5427]
 gi|326543134|gb|ADZ84993.1| Ribosomal RNA small subunit methyltransferase H [Clostridium
           lentocellum DSM 5427]
          Length = 349

 Score =  277 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 106/331 (32%), Positives = 162/331 (48%), Gaps = 31/331 (9%)

Query: 3   SKSCKTMSSAI---HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--- 56
            K   T+   I       G H+ + +++++  L   PG+  LDAT G GG++    K   
Sbjct: 32  EKYGDTIEKVIKKGSTPAGMHISICVKEILEFLQIKPGQKGLDATLGYGGHTLEMLKCLE 91

Query: 57  MGSNVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLG 112
              ++ ALD DP  +   ++ + D     E  ++ Q  F  +     + G  D ++ DLG
Sbjct: 92  AKGHMYALDVDPIEIVKTKKRLEDLGYGEEILTIKQLNFRDIDQVAAENGLFDFMLADLG 151

Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASR 171
           VSSMQID  DRGFSF+  GPLD+R+    GISA++ +     K+L  +L    +E  A  
Sbjct: 152 VSSMQIDNPDRGFSFKYEGPLDLRLDPEKGISAAERLKDMTQKELEGMLIENSDEPYAKE 211

Query: 172 IAHAIV-KRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPA-----TRSFQALRIFVNNEI 225
           I+ AI+ K R+     TT  L  +I + + F   ++   A      R+FQALRI VN+E 
Sbjct: 212 ISEAIISKIRKKDYISTTTKLQQVIGEALEFIPEDKRKEAIKKSCQRTFQALRIDVNSEF 271

Query: 226 EELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF 285
           E L + L      L  GG + +++FHS EDRLVKK F                     V+
Sbjct: 272 EVLEEFLEKLPNVLAKGGRVAILTFHSGEDRLVKKSFKRL--------------LREGVY 317

Query: 286 QSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
             I  +V+ P+ E+   N R+RS K+R  ++
Sbjct: 318 SEIATEVIRPSAEECNMNGRARSTKMRWAIK 348


>gi|295698684|ref|YP_003603339.1| S-adenosyl-methyltransferase MraW [Candidatus Riesia pediculicola
           USDA]
 gi|291157297|gb|ADD79742.1| S-adenosyl-methyltransferase MraW [Candidatus Riesia pediculicola
           USDA]
          Length = 310

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 98/308 (31%), Positives = 166/308 (53%), Gaps = 18/308 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPFAVSCGQ 75
           +H+ VL E+VI  LN       +D TFG GG+S+      +    +IA+DRDP ++S  +
Sbjct: 5   NHIAVLPEEVIEGLNIKRDGTYIDCTFGQGGHSKLILSKLEKKGKLIAIDRDPKSISVAK 64

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           +       +F +    FS +  +  ++     V+G++ DLG+S +QI+  +RGFSF+++G
Sbjct: 65  KI---KDSRFIIKHGLFSDIYQFAKEEKIVGKVNGILLDLGISMIQINDENRGFSFRRNG 121

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA---PFQT 187
            LDMRM+   GI A   + +A  +++  IL   GEEK++ +I+ +I ++          +
Sbjct: 122 SLDMRMNPEVGIPAKKWLEKAKREEIELILRRYGEEKKSRKISRSIFRQNHKKNLKKITS 181

Query: 188 TQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
           T+ L  ++ + V + +    HPATR+FQA+RI +NNE+EEL + L  +   L     + V
Sbjct: 182 TRQLVEIVSQIVSYKR---KHPATRTFQAIRIHINNELEELKEVLEKSLMVLAPLSRIAV 238

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           +SFHSLE R++K F        +  +     N    +   + +K + P + +V  N +SR
Sbjct: 239 ISFHSLESRIIKNFIKKYDSNSIINKKTFKKNIPEYIKLKLIEK-IKPKRSEVYKNPKSR 297

Query: 308 SAKLRAGM 315
           SA LR   
Sbjct: 298 SALLRIIQ 305


>gi|311087661|gb|ADP67740.1| S-adenosyl-methyltransferase MraW [Buchnera aphidicola str. JF98
           (Acyrthosiphon pisum)]
          Length = 271

 Score =  277 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 107/271 (39%), Positives = 164/271 (60%), Gaps = 16/271 (5%)

Query: 55  CKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFD 110
                 + ++DRDP A S G +       +F +    FS+L D+  ++     V+G++FD
Sbjct: 4   LGQSGRLYSIDRDPIAFSIGSKI---KDSRFHIINENFSKLLDFAKNEKIIGKVNGIIFD 60

Query: 111 LGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQA 169
           LGVSS+QID   RGFSF+  GPLDMRM+ + GISAS+ + ++NVK+++ +L   GEE+ +
Sbjct: 61  LGVSSIQIDDYRRGFSFKNDGPLDMRMNPNYGISASEWLFESNVKEISFVLKNFGEERFS 120

Query: 170 SRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELA 229
            +IA+AI +R Q     +T +L+++I+KT+   KN   HPA RSFQA+RI++N E+EE+ 
Sbjct: 121 RKIAYAIKRRSQIKKITSTLELANIIKKTIPT-KNKFKHPARRSFQAIRIYINQELEEIQ 179

Query: 230 QGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-----PAV 284
           + L +  K LK GG + ++SFHSLEDRLVKKF    S K +    M  +           
Sbjct: 180 KALENTLKILKPGGRISIISFHSLEDRLVKKFMIKNSTKAIIPYGMPITEEQLNRLTTCK 239

Query: 285 FQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
            + I +  ++PTQ ++  N R+RS+ LR   
Sbjct: 240 LKIINR--ILPTQNEINNNPRARSSVLRIAE 268


>gi|255588801|ref|XP_002534724.1| UDP-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase,
           putative [Ricinus communis]
 gi|223524690|gb|EEF27660.1| UDP-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase,
           putative [Ricinus communis]
          Length = 850

 Score =  276 bits (706), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 94/244 (38%), Positives = 137/244 (56%), Gaps = 7/244 (2%)

Query: 95  LQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQ 150
           +   + + GV   DG++ DLG+SS QID G RGFSF+  GPLDMRM  S G +A++ +  
Sbjct: 1   MATVLAELGVQAVDGILLDLGISSPQIDEGVRGFSFRFDGPLDMRMDQSRGKTAAEWLAT 60

Query: 151 ANVKDLTRILGILGEEKQASRIAHAIVKRRQSA-PFQTTQDLSSLIQKTVYFSKNNRIHP 209
            + K L  ++   GEE+ A ++A AIVK R+      TT  L+ ++   +  ++  + +P
Sbjct: 61  MSEKQLAEVIRDYGEERFAKQVARAIVKEREDGHAITTTGQLAKIVAGAIPKNEPGQ-NP 119

Query: 210 ATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKV 269
           ATR+FQALRIFVN E+EEL+  L    + L+  G L V+SFHSLEDR+VK+F  S   + 
Sbjct: 120 ATRTFQALRIFVNQELEELSLVLPDCLQLLRPQGRLAVISFHSLEDRIVKRFIQSEVDRD 179

Query: 270 -MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIEDDSFV 328
            +     + +   P        K + P + +VA N RSRSA LR   RT   +      V
Sbjct: 180 NLPAGLPVRAKDLPQPRLLAVGKAIKPGKAEVAANVRSRSAVLRVAERTQGEAFSRRKVV 239

Query: 329 HLPR 332
            +P 
Sbjct: 240 LMPH 243


>gi|290989161|ref|XP_002677211.1| predicted protein [Naegleria gruberi]
 gi|284090817|gb|EFC44467.1| predicted protein [Naegleria gruberi]
          Length = 300

 Score =  275 bits (705), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 122/310 (39%), Positives = 169/310 (54%), Gaps = 48/310 (15%)

Query: 38  KVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMR----DYK-EQFSLFQA 90
           K+ +DATFGAGGY+R   +   G  VI +D D +     +E  +    ++  E+  +   
Sbjct: 16  KLFIDATFGAGGYTREILRAYPGCKVIGIDTDYYNNPTIKENEKLIHEEFGKERLEVHCV 75

Query: 91  TFSQLQDYVPDKGV-----------DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139
            F +++  V +K V           DG+VFDLGVSSMQ+D G RGFSF + GPL      
Sbjct: 76  NFREIKKVVQEKIVPQLKSDTSNVIDGIVFDLGVSSMQLDQGHRGFSFLREGPL------ 129

Query: 140 SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQTTQDLSSLIQKT 198
               A DVVN  +  DL  ++   GE+ +A RIA AIV  R +  PF+TT +L++LI+K 
Sbjct: 130 ----ARDVVNNMSELDLRIMITKFGEDDKAYRIAKAIVDYRNNVKPFETTLELANLIEKI 185

Query: 199 VYF--SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG-GLLIVVSFHSLED 255
             F   K  RIHPAT++FQA+RIFVN+E+  L   L +++  LK G G L+VVS+HSLED
Sbjct: 186 TPFHERKKKRIHPATKTFQAIRIFVNDELSALQNALYASKDILKIGTGRLVVVSYHSLED 245

Query: 256 RLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           R+ K F                       F+ ITK  ++P   +V FN RSRSAKLR   
Sbjct: 246 RITKDFMKENQDS----------------FKKITKGTIIPDDAEVEFNVRSRSAKLRCAQ 289

Query: 316 RTVERSIEDD 325
           R      ++D
Sbjct: 290 RVENNRTDED 299


>gi|312196214|ref|YP_004016275.1| S-adenosyl-methyltransferase MraW [Frankia sp. EuI1c]
 gi|311227550|gb|ADP80405.1| S-adenosyl-methyltransferase MraW [Frankia sp. EuI1c]
          Length = 341

 Score =  275 bits (705), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 104/297 (35%), Positives = 162/297 (54%), Gaps = 10/297 (3%)

Query: 18  GDHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVS 72
             H+PVLL++V  LL P    PG + +DAT G GG++ +  +      ++ LDRDP A++
Sbjct: 3   ASHIPVLLDRVRTLLTPALTQPGAIAVDATLGLGGHAEAMLRALPELRLVGLDRDPQALA 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQK 129
             +E +     +     A + ++   +   G   V  V+FDLGVSS+Q+D  DRGF++ +
Sbjct: 63  ASRERLAFAAGRVEFAHAVYDEIPAVLDRLGIPAVHAVLFDLGVSSLQLDLDDRGFAYSR 122

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             PLDMRM  + G +A+DV+N  +   L R+L   GEE  A RIA A+V  R    F T+
Sbjct: 123 DAPLDMRMDPTTGRTAADVLNTYDEAALARVLRRYGEEPFARRIAAAVVAERAREAFTTS 182

Query: 189 QDLSSLIQKTVYFSKN-NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
             L+ L++  +  +      +PA R+FQALRI VN E+E L + L +A   +  GG + V
Sbjct: 183 SRLADLVRAAIPAAARRTGGNPAKRTFQALRIEVNAELEVLERALPAALDRIAVGGRIAV 242

Query: 248 VSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNR 304
           +++HSLEDRLVK+  A  +   +     +        F+ +T+    PT+ + A N 
Sbjct: 243 LAYHSLEDRLVKRALADVTTTRVPPDMPVVPAEAEPTFRLLTRGSEPPTEAETAANP 299


>gi|161870663|ref|YP_001599836.1| S-adenosyl-methyltransferase MraW [Neisseria meningitidis 053442]
 gi|161596216|gb|ABX73876.1| S-adenosyl-methyltransferase mraW [Neisseria meningitidis 053442]
          Length = 264

 Score =  275 bits (704), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 96/253 (37%), Positives = 140/253 (55%), Gaps = 6/253 (2%)

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           E +    ++  +    F+  Q  +   G   VDG +FDLG+SS QID G RGFSF+   P
Sbjct: 3   EELARSDKRVGVVHGGFASFQTALDGLGIGKVDGALFDLGISSPQIDDGSRGFSFRFDAP 62

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM    G+SA++ +  A+ +DL  ++   GEE+ + +IA AIV +R  +P  TT+ L
Sbjct: 63  LDMRMDTMRGMSAAEWIAVASEQDLHEVIKNYGEERFSRQIARAIVAQRAESPIDTTRKL 122

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + ++ + V   +  +  PATR+FQA+RIF+N E+EE+   L      LK GG L V++FH
Sbjct: 123 AQIVAQNVRTRERGQ-DPATRTFQAIRIFINRELEEVGAVLPQVMCRLKEGGRLAVIAFH 181

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSITKKVVVPTQEDVAFNRRSRSAK 310
           SLEDR+VK+F    S      R      A  P     I  + + P + ++A N R+RSA 
Sbjct: 182 SLEDRIVKQFVKKYSQHAPLPRWAAVREADLPEPPLKIAGRALKPGEAEIAANPRARSAV 241

Query: 311 LRAGMRTVERSIE 323
           LR   RT     E
Sbjct: 242 LRVAERTAGPIPE 254


>gi|330938035|gb|EGH41807.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 246

 Score =  275 bits (704), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 93/242 (38%), Positives = 143/242 (59%), Gaps = 8/242 (3%)

Query: 82  KEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
             +F + Q +F++L     ++G    V G++ DLGVSS Q+D  +RGFSF   GPLDMRM
Sbjct: 4   DGRFVIVQRSFAELGSETQERGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDGPLDMRM 63

Query: 138 SCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
             + G+SA++ +  A  +++ R+    GEE+ A R+A+A+V RR+  PF+ T DL+ +++
Sbjct: 64  DPTCGVSAAEFIATAPAEEIARVFKEYGEERFAKRMANAVVARREVQPFERTADLAEVLK 123

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
                 +  + +PATR+FQ LRI VNNE+ +L  GL +A  AL+ GG L+V+SFHSLEDR
Sbjct: 124 VANPAWEKGK-NPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLVVISFHSLEDR 182

Query: 257 LVKKFFASRS-GKVMAVRHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           +VK F    + G+   +   +P    P   +  I  K    +  +   N RSRSA +R  
Sbjct: 183 IVKLFMRKLAKGEADNMPRNLPIQYKPFEPKIKIHGKAQFASDVETKANPRSRSAVMRVA 242

Query: 315 MR 316
            +
Sbjct: 243 EK 244


>gi|307297403|ref|ZP_07577209.1| S-adenosyl-methyltransferase MraW [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306916663|gb|EFN47045.1| S-adenosyl-methyltransferase MraW [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 299

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 98/295 (33%), Positives = 157/295 (53%), Gaps = 29/295 (9%)

Query: 20  HVPVLLEKVIALL-NPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
           H  V++ + +  L         +D T G GG+ R+  +     + +I LD D   ++  +
Sbjct: 9   HRSVMIHEALHYLLGGRLTGTYIDCTAGEGGHIRAMLEATEGQAKIIGLDVDSEVLNIAE 68

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
           + ++DY+E   LF  ++   +  +   GV   DG + D+GVS+ Q+    RGFS++   P
Sbjct: 69  QNLKDYRESVELFNLSYVDFEIALRQAGVEKVDGFLLDVGVSTFQLKAKGRGFSYELDEP 128

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEK-QASRIAHAIVKRRQSAPFQTTQD 190
           LDMRM+ S   +A+DVVN     +L+RI+   G+EK  A +IA +IV RR   P  TT+D
Sbjct: 129 LDMRMNLSQKRTAADVVNSYREDELSRIIFEFGDEKRFARKIARSIVSRR---PLFTTKD 185

Query: 191 LSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           L   I+  +  ++    R H AT++FQA+RI VN E+E +   LR     L  GG ++++
Sbjct: 186 LHDAIKAAIPPAERYKRRRHFATKTFQAVRIEVNQELENIESTLRKIPGFLNQGGRIVII 245

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
           SFHSLED + K+ F  +S                +  + +TKK V P++E+V  N
Sbjct: 246 SFHSLEDGIAKRVFREKS---------------ESELKILTKKPVQPSKEEVELN 285


>gi|255026327|ref|ZP_05298313.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL
           J2-003]
          Length = 227

 Score =  273 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 75/226 (33%), Positives = 126/226 (55%), Gaps = 8/226 (3%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSC 73
           +  H  VLL + + +L   P  + +DAT G  G+S           ++ A D+D  A+  
Sbjct: 1   MFKHETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNEKGHLFAFDQDQTAIDN 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +  + DY ++ +  +A F  +++ + ++G   VDG+++DLGVSS Q+D  +RGFS+ + 
Sbjct: 61  AKIKLADYSDKVTFIKANFRDMKEALNERGIEAVDGILYDLGVSSPQLDERERGFSYHQD 120

Query: 131 GPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
             LDMRM     ++A  VVN+ + +DL RI    GEEK + +IA  I +RR+  P +TT 
Sbjct: 121 AALDMRMDQEQELTAKTVVNEWSYQDLIRIFFQYGEEKFSKQIAREIERRREVKPIETTG 180

Query: 190 DLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRS 234
           +L  +I+  +   ++    HP  R+FQA+RI VN+E+  +   L  
Sbjct: 181 ELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEK 226


>gi|323485088|ref|ZP_08090441.1| hypothetical protein HMPREF9474_02192 [Clostridium symbiosum
           WAL-14163]
 gi|323401644|gb|EGA93989.1| hypothetical protein HMPREF9474_02192 [Clostridium symbiosum
           WAL-14163]
          Length = 348

 Score =  273 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 98/315 (31%), Positives = 159/315 (50%), Gaps = 28/315 (8%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
            +G H+ + +++++  L   PG+  LDAT G GG++++  +      ++  LD D     
Sbjct: 47  PVGMHISICVKEILEFLQIQPGQKGLDATLGYGGHTQAILECLQGKGHIYGLDVDAVEQE 106

Query: 73  CGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQ 128
             ++ +       E  ++ +  F+ +     + G  D V+ DLGVSSMQID  DRGFS++
Sbjct: 107 KTRKRLEALGYGPELLTVRKLNFANIDQVAAEAGTFDFVLADLGVSSMQIDNPDRGFSYK 166

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV-KRRQSAPFQ 186
             GPLD+R+    GISA++ +   + ++L  +L    +E  A+ I+ A++  RR+     
Sbjct: 167 NEGPLDLRLDSEKGISAAERLKDISREELEGMLAENSDEPYAAEISRAVISARRKGTAID 226

Query: 187 TTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
           TT  L  LI++ + F      K        R+FQALRI VN+E E L + L      L  
Sbjct: 227 TTTKLRRLIEEALSFLPEGERKEAVKKSCQRTFQALRIDVNSEFEVLEEFLEKLPDILSP 286

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           GG   +++FHS EDRLVKK F     +               V+  I  +V+ PT E+  
Sbjct: 287 GGRAAILTFHSGEDRLVKKSFKRLKKQG--------------VYSEIADEVIRPTAEECN 332

Query: 302 FNRRSRSAKLRAGMR 316
            N R+RS K+R  ++
Sbjct: 333 MNSRARSTKMRWAVK 347


>gi|223935232|ref|ZP_03627150.1| S-adenosyl-methyltransferase MraW [bacterium Ellin514]
 gi|223896116|gb|EEF62559.1| S-adenosyl-methyltransferase MraW [bacterium Ellin514]
          Length = 353

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 96/316 (30%), Positives = 159/316 (50%), Gaps = 29/316 (9%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72
             G H  + + +++ +L P PG++ +DAT G GG++    +    G  ++ LD DP  + 
Sbjct: 51  PAGSHRSICVREIMEVLAPKPGEIAVDATLGYGGHALEILRAIQPGGRLVGLDVDPMEMP 110

Query: 73  CGQETMRDYK---EQFSLFQATFSQLQDYVPDKGVDG---VVFDLGVSSMQIDCGDRGFS 126
             +  +R      E   + ++ F+ L   +  +G+ G   ++ DLG+SSMQID   RGF+
Sbjct: 111 KTETRLRSVGAPAESLIIRRSNFAGLPQVLAGEGIPGADIILADLGLSSMQIDNPARGFT 170

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           F+  GPLD+R++   G  AS ++      +L RIL    +E  A  +A  I++ +   P 
Sbjct: 171 FKFEGPLDLRLNPERGRPASALLATLKEPELIRILQDNADEPDAGLLAKGILQAQLRYPI 230

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPAT-----RSFQALRIFVNNEIEELAQGLRSAEKALK 240
            TT  L+ +I++    +  N+          R FQALRI VN+E   L   LR+      
Sbjct: 231 TTTTGLAEVIREAFRSAHRNKTKDEANTSIRRVFQALRIAVNDEFGALDMFLRNLPGCSN 290

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300
           +GG + +++FHS EDR VKK F                     V+ SI ++++ P++E+ 
Sbjct: 291 SGGRVAILTFHSGEDRRVKKAFQD--------------GKRAGVYSSIAEEIIRPSREET 336

Query: 301 AFNRRSRSAKLRAGMR 316
             N R+ SAKLR  +R
Sbjct: 337 RSNPRASSAKLRWAIR 352


>gi|116515077|ref|YP_802706.1| S-adenosyl-dependent methyl transferase [Buchnera aphidicola str.
           Cc (Cinara cedri)]
 gi|122285527|sp|Q057T6|RSMH_BUCCC RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|116256931|gb|ABJ90613.1| S-adenosyl-dependent methyl transferase [Buchnera aphidicola str.
           Cc (Cinara cedri)]
          Length = 307

 Score =  273 bits (698), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 105/318 (33%), Positives = 169/318 (53%), Gaps = 37/318 (11%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQE 76
           H+PVLL++ I  LN     + +D TFG GG+++   K       + ++D+D  +V+ G++
Sbjct: 3   HIPVLLKETINALNIKKNGIYIDGTFGNGGHTKEILKYLGQSGKLYSIDQDIKSVNKGKK 62

Query: 77  TMRDYKEQFSLFQATFSQLQDYV----PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                 ++FS+    FS+   Y+      K +DG++ DLG+SS QI+  DRGFSF K+G 
Sbjct: 63  I---KDKRFSIIFGKFSKKIPYIYKKNKKKKIDGILLDLGISSNQINQNDRGFSFMKNGL 119

Query: 133 LDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM+  +GI A   + +++ K++ ++L   GEE+ + +I++AI  R +      T DL
Sbjct: 120 LDMRMNNTTGIPAWKWLKKSSQKEIEKVLRKYGEERYSKKISYAIYNRNKKKTITQTLDL 179

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
             +I+K +    +   HPATR+FQA+RI +NNEI+EL + L+ + K LK    L+++ FH
Sbjct: 180 VQIIKKAIP-KIDKYKHPATRTFQAIRIHINNEIKELKKTLKISIKILKKKRRLVIICFH 238

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK--------------KVVVPTQ 297
           SLE+R+VK FF          R +  +       ++                 K      
Sbjct: 239 SLENRIVKNFFKKHGKTFFIPRGLPITEKKIKKIENKKIKIIKKIKPKKTEIQK------ 292

Query: 298 EDVAFNRRSRSAKLRAGM 315
                N+RSRSA LR   
Sbjct: 293 -----NKRSRSAILRIAE 305


>gi|323693536|ref|ZP_08107740.1| S-adenosyl-methyltransferase MraW [Clostridium symbiosum WAL-14673]
 gi|323502391|gb|EGB18249.1| S-adenosyl-methyltransferase MraW [Clostridium symbiosum WAL-14673]
          Length = 348

 Score =  272 bits (696), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 97/315 (30%), Positives = 159/315 (50%), Gaps = 28/315 (8%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
            +G H+ + +++++  L   PG+  LDAT G GG++++  +      ++  LD D     
Sbjct: 47  PVGMHISICVKEILEFLQIQPGQKGLDATLGYGGHTQAMLECLQGKGHIYGLDVDAVEQE 106

Query: 73  CGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQ 128
             ++ +       E  ++ +  F+ +     + G  D V+ DLGVSSMQID  DRGFS++
Sbjct: 107 KTRKRLEALGYGPELLTVRKLNFANIDQVAAEVGTFDFVLADLGVSSMQIDNPDRGFSYK 166

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV-KRRQSAPFQ 186
             GPLD+R+    GISA++ +   + ++L  +L    +E  A+ I+ A++  RR+     
Sbjct: 167 NEGPLDLRLDSEKGISAAERLKDISREELEGMLAENSDEPYAAEISRAVISARRKGTAID 226

Query: 187 TTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
           TT  L  L+++ + F      K        R+FQALRI VN+E E L + L      L  
Sbjct: 227 TTTKLRRLVEEALSFLPEGERKEAVKKSCQRTFQALRIDVNSEFEVLEEFLEKLPDILSP 286

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           GG   +++FHS EDRLVKK F     +               V+  I  +V+ PT E+  
Sbjct: 287 GGRAAILTFHSGEDRLVKKSFKRLKKQG--------------VYSEIADEVIRPTAEECN 332

Query: 302 FNRRSRSAKLRAGMR 316
            N R+RS K+R  ++
Sbjct: 333 MNSRARSTKMRWAVK 347


>gi|315453816|ref|YP_004074086.1| putative S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Helicobacter felis ATCC 49179]
 gi|315132868|emb|CBY83496.1| putative S-adenosyl-L-methionine-dependent methyltransferase mraW
           [Helicobacter felis ATCC 49179]
          Length = 288

 Score =  272 bits (696), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 100/306 (32%), Positives = 160/306 (52%), Gaps = 32/306 (10%)

Query: 19  DHVPVLLEKVIALLNP---APGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSC 73
            H  VLL++VI    P   A   +++D T G GG+S +  +   ++  I +DRD  A S 
Sbjct: 1   MHQSVLLQEVIQAFAPLAQARDPLLIDCTLGLGGHSLTLLQTYPHLRIIGIDRDLEASSI 60

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGV----DGVVFDLGVSSMQIDCGDRGFSFQK 129
            ++ +  +  +F+    T++++   + D+G+     GV+ DLGVSS+Q+D   RGF F  
Sbjct: 61  AEQRLALHASRFTYRYGTYAEVIAQLIDEGIWQNCHGVLADLGVSSLQLDNPSRGFGF-A 119

Query: 130 SGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           S  LDMRM   + + A  V+N  ++ DL ++L   GE + A +IAH IV RR    FQ+ 
Sbjct: 120 SHTLDMRMDTQASLDAFKVINHYSLYDLEQVL-EKGEVRGAKKIAHLIVNRRHKCLFQSG 178

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            +L+  + + +   +    HPAT  FQA+R+ VN EI+ L   L  +++       L ++
Sbjct: 179 MELAEFLSQHL---RRTHHHPATLVFQAVRMEVNAEIQNLRALLEYSKQL--QNAHLAII 233

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHSLEDR VK  F   +                     ++KK + P ++++  N RSRS
Sbjct: 234 SFHSLEDREVKHTFKEYAKSYGVC---------------LSKKPITPCKQEIQDNPRSRS 278

Query: 309 AKLRAG 314
           AK+R  
Sbjct: 279 AKMRIF 284


>gi|219128094|ref|XP_002184257.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217404488|gb|EEC44435.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 290

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 104/297 (35%), Positives = 149/297 (50%), Gaps = 34/297 (11%)

Query: 39  VILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95
           + +D T G GG+S +  +    G  V   D DP A++   E                +  
Sbjct: 1   LFIDGTLGGGGHSAALLQRLQPGDVVFGCDVDPAALATASER-----------TGNDATT 49

Query: 96  QDYVPD--KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC----SGISASDVVN 149
              +P    GVDG++ DLGVSS QID  +RGF+F K GPLDMRM      +G++A+D+ N
Sbjct: 50  NLVLPPTCPGVDGILLDLGVSSHQIDTAERGFAFMKDGPLDMRMGQQNLHTGLTAADICN 109

Query: 150 QANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVY-----FSKN 204
           + +  +L RIL   G+E +A  IAH+IV+ R   P QTT DL   +   V        + 
Sbjct: 110 EFDEVELRRILKTYGDEPRAKSIAHSIVQSR---PLQTTNDLVEAVSAVVPQFARKGKRL 166

Query: 205 NRIHPATRSFQALRIFVNNEIEELAQGLRS-AEKALKAGGLLIVVSFHSLEDRLVKKFFA 263
            R+    R FQ+LRI VN E + L Q L   A   L+ GG L+V+S+ S+EDR  K+   
Sbjct: 167 GRMSTLARVFQSLRIVVNQEDKVLEQALVDMAPTLLRPGGRLVVLSYQSMEDRSTKRVMR 226

Query: 264 S---RSGKVMAVRHMIPS-NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
               R       + M  +    P  F ++ K+    T+E++A N R+RSA LR   R
Sbjct: 227 DGMTRKKTHSDEKDMYGNYCGAPRPFLALGKR-QKATEEEIAGNPRARSATLRVAER 282


>gi|169839498|ref|ZP_02872686.1| S-adenosyl-methyltransferase MraW [candidate division TM7
           single-cell isolate TM7a]
          Length = 339

 Score =  268 bits (686), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 119/307 (38%), Positives = 163/307 (53%), Gaps = 29/307 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           HVPVLL   + L  P P +  LD T G GG++ +F       S+ + +DRD  A++    
Sbjct: 18  HVPVLLSASLDLFKPQPKERYLDLTAGYGGHAEAFLNKTQSYSSAVLVDRDENAIAE-LG 76

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
                    +L  A F      +   G   D ++ DLGVSS Q+D GDRGFSF   GPLD
Sbjct: 77  RFSALGA--TLINADFVSAAKQLVSVGEKFDVIMVDLGVSSPQLDNGDRGFSFMYDGPLD 134

Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEK--QASRIAHAIVKRRQSAPFQTTQDL 191
           MRM      SA+D+VN    + L  IL   GEE+   A RIA  I KRR   PF  T +L
Sbjct: 135 MRMDQRQKFSAADIVNSYPKQKLIEILVRYGEERLSFAKRIADEIYKRR---PFTKTSEL 191

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           + +I + ++     +IHPATR+FQALRI VN E+ ++   L    + L +GG + ++SFH
Sbjct: 192 AKMIVE-IHRGGWQKIHPATRTFQALRIEVNQELAQIESLLPLLLQLLNSGGRVGIISFH 250

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV-VPTQEDVAFNRRSRSAK 310
           SLEDRLVK+FF   SG               +  + + KK +   T +  A+N RSRSAK
Sbjct: 251 SLEDRLVKRFFKDNSGLSF-----------ESELELLNKKPLDGATYD--AYNPRSRSAK 297

Query: 311 LRAGMRT 317
           LR  ++ 
Sbjct: 298 LRGALKN 304


>gi|241998832|ref|XP_002434059.1| SAM dependent methyltransferase, putative [Ixodes scapularis]
 gi|215495818|gb|EEC05459.1| SAM dependent methyltransferase, putative [Ixodes scapularis]
          Length = 368

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 100/351 (28%), Positives = 154/351 (43%), Gaps = 41/351 (11%)

Query: 5   SCKTMSSAIHHTIGD---HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN- 60
             K MSSA+     +   H PV+L +VI  LN   G+ ++D TFGAGG+S++      + 
Sbjct: 18  KAKQMSSAVSQLETERFTHTPVMLTEVIDALNVQDGQTLIDFTFGAGGHSKALLSAAKDV 77

Query: 61  -VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG-----VDGVVFDLGVS 114
            V  +DRDP A         +Y  +     + FS++++ +   G     VDG + D G S
Sbjct: 78  KVFGVDRDPTAYRAACSIATEYPGRLFPVLSRFSEVEETLEQLGVQPNSVDGAILDCGCS 137

Query: 115 SMQIDCGDRG-------FSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEK 167
           SMQ D   RG       F       LD     S      ++ +++V    +I        
Sbjct: 138 SMQFDDPSRGSIHGIMKFPLNLCVKLDCLRHPSSYVIGTLLYKSSVDIKKQIQKYFSNAS 197

Query: 168 QASRIAHAIV---------KRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALR 218
            A  +   +          +R QS        + SL ++     +    H AT++F ALR
Sbjct: 198 TAETLCGNVFESLIVLSRNERHQSWVGAGQLYIGSLGERRDMLGRPT--HLATKTFMALR 255

Query: 219 IFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPS 278
           IFVN+E+ EL   L    + L+ GG L V+SFHSLEDRLVK+ F            +   
Sbjct: 256 IFVNDELNELNHALTVGRRLLRPGGRLAVLSFHSLEDRLVKRHFQGIDLDEPVSGSIAQK 315

Query: 279 NAHPAVFQ-----SITKK----VV----VPTQEDVAFNRRSRSAKLRAGMR 316
             + A +       + ++     +    +P+ ++V  N RSRSAKLR   +
Sbjct: 316 YRNAATWHGREEMEVARRRVWEPIGTLGLPSAQEVERNPRSRSAKLRVAAK 366


>gi|213423591|ref|ZP_03356571.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 237

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 97/238 (40%), Positives = 146/238 (61%), Gaps = 13/238 (5%)

Query: 90  ATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISA 144
             FS L DYV ++     +DG++ DLGVSS Q+D  +RGFSF + GPLDMRM  + G SA
Sbjct: 1   GPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFMRDGPLDMRMDPTRGQSA 60

Query: 145 SDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKN 204
           ++ +  A   D+  +L   GEE+ A RIAHAIV+R +  P   T++L+ ++       K+
Sbjct: 61  AEWLQTAEEADIAWVLKTFGEERFAKRIAHAIVERNREQPMTRTKELAEVVAAATPV-KD 119

Query: 205 NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFAS 264
              HPATR+FQA+RI+VN+E+EE+ Q L+S+   L +GG L ++SFHSLEDR+VK+F   
Sbjct: 120 KFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLASGGRLSIISFHSLEDRIVKRFMRE 179

Query: 265 RSGKVMAVRHMIPSNAHPAV-----FQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           +S        +  + A          +++ K  ++P +++VA N R+RS+ LR   RT
Sbjct: 180 QSRGPQVPAGLPMTEAQLKKLGGRELRALGK--LMPGEKEVAENPRARSSVLRIAERT 235


>gi|119588675|gb|EAW68269.1| methyltransferase 5 domain containing 1, isoform CRA_d [Homo
           sapiens]
          Length = 345

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 109/323 (33%), Positives = 159/323 (49%), Gaps = 76/323 (23%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H+PV++++V+  L+P  G++ LD TFG+GG++++  +  S+  + ALDRDP A +  +  
Sbjct: 72  HIPVMVDEVVHCLSPQKGQIFLDMTFGSGGHTKAILQKESDIVLYALDRDPTAYALAEHL 131

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              Y +Q       FSQ +  +   GV     DGV+ DLG SSMQ+D  +RGFS +K GP
Sbjct: 132 SELYPKQIRAMLGQFSQAEALLMKAGVQPGTFDGVLMDLGCSSMQLDTPERGFSLRKDGP 191

Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           LDMRM  +   ++                                         T +DL 
Sbjct: 192 LDMRMDGAFPPSA---------------------------------------IYTRKDLL 212

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
                          H AT++FQALRIFVNNE+ EL  GL++A+K L+ GG L+ +SFHS
Sbjct: 213 Q-----------RSTHIATKTFQALRIFVNNELNELYTGLKTAQKFLRPGGRLVALSFHS 261

Query: 253 LEDRLVKKFF-------------------ASRSGKVMAVRHMIPSNAHPAVFQSITKKVV 293
           LEDR+VK+F                     S+ G        +     P +++ I KKV+
Sbjct: 262 LEDRIVKRFLLGISMTERFNLSVRQQVMKTSQLGSDHENTEEVSMRRAPLMWELIHKKVL 321

Query: 294 VPTQEDVAFNRRSRSAKLRAGMR 316
            P  +DV  N R RSAKLRA ++
Sbjct: 322 SPQDQDVQDNPRGRSAKLRAAIK 344


>gi|218508691|ref|ZP_03506569.1| S-adenosyl-methyltransferase MraW [Rhizobium etli Brasil 5]
          Length = 227

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 123/227 (54%), Positives = 156/227 (68%), Gaps = 1/227 (0%)

Query: 116 MQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175
           MQ+D  +RGFSFQK+GPLDMRMS +G+SA+DVVN+A V DL RI   LGEE QA RIAHA
Sbjct: 1   MQLDEAERGFSFQKNGPLDMRMSATGVSAADVVNRAKVADLIRIFHFLGEESQAPRIAHA 60

Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           I KRR   PF+TT+DL+ LI+        ++IHPATR FQALRIFVN+E+ ELAQ L +A
Sbjct: 61  IEKRRAEKPFETTRDLAGLIELVTPRKMKDKIHPATRVFQALRIFVNDELGELAQALFAA 120

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295
           E  LK GG L+VV+FHSLEDR+VKKFF+ R+GK    RH+  ++   A F ++ K +V  
Sbjct: 121 ETVLKPGGRLVVVTFHSLEDRIVKKFFSDRAGKASGSRHLPAAHERAATFTTVGKSMVSA 180

Query: 296 TQEDVAFNRRSRSAKLRAGMRT-VERSIEDDSFVHLPRLPTLSQFRG 341
           ++ +   N R+RSAKLRAG RT       D S    P L +L +  G
Sbjct: 181 SEAEAESNPRARSAKLRAGQRTAAAAEAADMSLFGFPNLASLGKLGG 227


>gi|255076257|ref|XP_002501803.1| MraW methylase/RNA recognition motif protein [Micromonas sp.
           RCC299]
 gi|226517067|gb|ACO63061.1| MraW methylase/RNA recognition motif protein [Micromonas sp.
           RCC299]
          Length = 744

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 98/341 (28%), Positives = 149/341 (43%), Gaps = 20/341 (5%)

Query: 12  AIHHTIGDHVPVLLEKVIALL-NPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRD 67
           A     G H P +L + IA L  P P    +D TFG GG++R           + A D D
Sbjct: 354 ATEQAFGTHTPAMLRETIAALVKPDPNGTYVDGTFGRGGHTRGILAALGPNGRLHAFDMD 413

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV--DGVVFDLGVSSMQIDCGDRGF 125
           P A+    + +     +F++  A F  +   +   GV   GV  DLG+SS Q D   RGF
Sbjct: 414 PEAIKEA-KKLEAEDSRFTIHHAPFGCMDTVLKPLGVTCSGVFLDLGISSPQFDDESRGF 472

Query: 126 SFQKSGPLDMRMS-CSGISASDVVNQANVKDLTRILGILGEEKQA---SRIAHAIVKRRQ 181
             ++ GPLD+R     G+ AS+ + + +  +L RIL   GE        RIA A+     
Sbjct: 473 RPEQDGPLDLRFDVTQGVPASEFLERVDRDELVRILHEYGETADPVAARRIADAVCLAVA 532

Query: 182 SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
                +T    + +       +   +HPA  +FQALRI +N E +E+ +G+R+A + +  
Sbjct: 533 EERLPSTTKAFAALVAAAKGKEYQAMHPAKLTFQALRIHLNQEFDEMRRGMRAAAEVMID 592

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRS--------GKVMAVRHMIPSNAHPAVFQSITKKVV 293
           GG L V+++   E  ++  F              K M   H    NA P V+        
Sbjct: 593 GGRLGVLTWKHSECAILVDFHRHFEVVQPTQPLLKWMRSNHPEKENALPTVWGLTMDDAQ 652

Query: 294 VPTQEDVAFNRRSRSAKLRAGMRTVE-RSIEDDSFVHLPRL 333
            P++ ++  N RSRSA L    +    R + D      P L
Sbjct: 653 RPSEREMRDNSRSRSAILHVLRKVDAGRRLADVERAAYPLL 693


>gi|289810554|ref|ZP_06541183.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 231

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 90/230 (39%), Positives = 135/230 (58%), Gaps = 12/230 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++  Q
Sbjct: 6   KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAQ 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +FS+    FS L DYV ++     +DG++ DLGVSS Q+D  +RGFSF + G
Sbjct: 66  TI---NDPRFSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFMRDG 122

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190
           PLDMRM  + G SA++ +  A   D+  +L   GEE+ A RIAHAIV+R +  P   T++
Sbjct: 123 PLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIAHAIVERNREQPMTRTKE 182

Query: 191 LSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           L+ ++       K+   HPATR+FQA+RI+VN+E+EE+ Q  +   +  +
Sbjct: 183 LAEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIEQATKKLAQRTR 231


>gi|126643217|ref|YP_001086201.1| S-adenosylmethionine methyltransferase [Acinetobacter baumannii
           ATCC 17978]
          Length = 223

 Score =  265 bits (679), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 85/226 (37%), Positives = 129/226 (57%), Gaps = 8/226 (3%)

Query: 97  DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKD 155
             +  + VDG++ DLGVSS Q+D  +RGFSF + GPLDMRM  S G++A++ + +   +D
Sbjct: 2   QEIGVQSVDGIMADLGVSSPQLDQAERGFSFMQDGPLDMRMDNSKGLTAAEWLLEVEEED 61

Query: 156 LTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQ 215
           L  I+   GEE+ + RIA AI +        TT  L+ +++      + ++ HPATR+FQ
Sbjct: 62  LANIIYQYGEERYSRRIARAIKQA---GKLDTTAQLAEIVKTAHPKWEKHK-HPATRTFQ 117

Query: 216 ALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM 275
           A+RI +N E++++   L  A   LK  G L V+SFHSLEDRL+K+F    S         
Sbjct: 118 AIRIAINKELDDIEVFLPQAVDLLKPKGRLSVISFHSLEDRLIKQFIQKESTLAEDSGWG 177

Query: 276 IPSNA-HPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVER 320
           +P         + I++  V  ++E+V  N RSRSA LR   R  ++
Sbjct: 178 MPQQQVDTRRLKKISR--VRASEEEVKANPRSRSAWLRVAERLEQK 221


>gi|262276873|ref|ZP_06054666.1| S-adenosyl-methyltransferase MraW [alpha proteobacterium HIMB114]
 gi|262223976|gb|EEY74435.1| S-adenosyl-methyltransferase MraW [alpha proteobacterium HIMB114]
          Length = 329

 Score =  265 bits (677), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 110/305 (36%), Positives = 164/305 (53%), Gaps = 7/305 (2%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76
            H PV+L +V   L+    K+ILD TFG GGYS    K  SN  VIA+DRD   +   ++
Sbjct: 7   KHYPVMLREVTNFLS--DNKLILDCTFGGGGYSSEILKNYSNSKVIAIDRDIEIIQFAKK 64

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
             + Y ++F      FS++        +D  +FDLGVS  Q+    RGFSF     L M 
Sbjct: 65  LEKKYLKRFVFKNLKFSEIHKVKEINQIDYFIFDLGVSHFQLKDMKRGFSFSSDDSLSMS 124

Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
           M  + + A +++ + + KDL  IL   GEEK AS+IA+ I+  R++    + + L+ +I+
Sbjct: 125 MGLTDLDAEELIRKVSEKDLKNILKFFGEEKFASKIANKIINVRKNKNISSGKKLAEIIE 184

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
                 K N+ HP+T+SFQALR+ VN E+ E+ + L+   +  K    +I+V+FHSLED 
Sbjct: 185 TV--KFKKNKTHPSTKSFQALRMIVNQELLEIYKSLKFIIENCKENSTIIIVTFHSLEDL 242

Query: 257 LVKKFFASRSGKVMAVRHMIP-SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           LVKK       K    R++   S+      + +T K + P  E+V  N  SRSAKLRA  
Sbjct: 243 LVKKIINFYGKKTSTSRYLPQDSDIKKMPIKILTNKAIKPNSEEVNVNPSSRSAKLRAFT 302

Query: 316 RTVER 320
           +  + 
Sbjct: 303 KICKP 307


>gi|171915286|ref|ZP_02930756.1| S-adenosyl-methyltransferase MraW [Verrucomicrobium spinosum DSM
           4136]
          Length = 352

 Score =  263 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 100/330 (30%), Positives = 165/330 (50%), Gaps = 34/330 (10%)

Query: 3   SKSCKTMS---SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-- 57
            +   T++   ++     G H+P++L +++ +L P PG+  LD T G GG++ +  +   
Sbjct: 40  ERYADTVAKVRASGKTPAGQHIPIMLPEILEVLAPQPGERALDCTLGYGGHAEALLRAVQ 99

Query: 58  -GSNVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPD----KGVDGVVF 109
               ++ LD+D   +      ++          + +  F+ L+  + +     G D ++ 
Sbjct: 100 PDGCLMGLDQDAIEIEKTGARLKALGFPEATLRVVRMNFAGLRKALDEAAWSDGADVILA 159

Query: 110 DLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQ 168
           DLGVSSMQID   RGFSF+  GPLDMRM+   G+ A +++ + +V  LT +L    +E  
Sbjct: 160 DLGVSSMQIDNPARGFSFKSDGPLDMRMNPLRGVPARELLRKISVPKLTALLEENADETN 219

Query: 169 ASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPAT--RSFQALRIFVNNEIE 226
           +  +A A+        F  T  L++ +++ +    +     AT  R FQALRI VN+E  
Sbjct: 220 SILLAAAL----AGQDFAKTPTLAAAVKRALPRHLDEEEVTATTRRVFQALRIAVNDEFG 275

Query: 227 ELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQ 286
            L   LR    AL+ GG + V++FHS EDR VKK F + S                  F 
Sbjct: 276 ALDSFLRVLPTALRPGGRVAVLTFHSGEDRRVKKAFLAGSRDG--------------TFS 321

Query: 287 SITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           +I+ +V  P+ E++  N R+ SAKLR  +R
Sbjct: 322 AISDEVQRPSPEEIRLNTRAASAKLRWAVR 351


>gi|303278410|ref|XP_003058498.1| MraW methylase/RNA recognition motif protein [Micromonas pusilla
           CCMP1545]
 gi|226459658|gb|EEH56953.1| MraW methylase/RNA recognition motif protein [Micromonas pusilla
           CCMP1545]
          Length = 875

 Score =  262 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 96/327 (29%), Positives = 153/327 (46%), Gaps = 26/327 (7%)

Query: 14  HHTIGDHVPVLLEKVIALL-NPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69
               G H P +L + I  L  P    V +D TFG GG+SR           + A D DP 
Sbjct: 483 DQAHGTHTPAMLRETIDALVAPNRDGVYVDGTFGRGGHSRGILAALSNRGRLHAFDMDPE 542

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV--DGVVFDLGVSSMQIDCGDRGFSF 127
           A++   + +     +F++  A F  +   +  KGV   GV  DLG+SS Q D   RGF  
Sbjct: 543 AIAEA-KKLEAEDARFTIHHAPFGCMDTVLKPKGVVVAGVFLDLGISSPQFDDASRGFRP 601

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQA---SRIAHAIVKRRQSA 183
           ++ GPLD+R   + GI ASD + +    DL R++   GE   A    R+A A+   R++ 
Sbjct: 602 EQDGPLDLRFDVTRGIPASDYLRRVERDDLARVIETYGETADATAARRVADAVCLARETG 661

Query: 184 PF--QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
                TT+  +SL+ +     +   +HPA  +FQALRI +N E +E+ +G+R+A + ++ 
Sbjct: 662 EGVPSTTKAFASLVARA-KGQEYQAMHPAKLTFQALRIELNQEFDEMRRGMRAAVEVMED 720

Query: 242 GGLLIVVSFHSLEDRLVKKFFAS-RSGKVMAVRHMIPSNAHPAV-----------FQSIT 289
           GG L V+++   E  ++  FF      +          + HP+V           +    
Sbjct: 721 GGRLGVLTWKHSECAILVDFFRHVEETRPDLPLARFLEDRHPSVAAEVALANSDGWALTA 780

Query: 290 KKVVVPTQEDVAFNRRSRSAKLRAGMR 316
                P++++   N RSRSA L    +
Sbjct: 781 DDAKRPSEKETRENSRSRSAILHVLRK 807


>gi|47230508|emb|CAF99701.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 437

 Score =  262 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 124/388 (31%), Positives = 177/388 (45%), Gaps = 83/388 (21%)

Query: 12  AIHHTIGDHVPVLLEKVIALLNPAPGK----------VILDATFGAGGYSRSFCKMGS-- 59
           ++      H PV+L++V+  L+  PG+          V+LD TFG GG++++   M    
Sbjct: 49  SVSAENPPHTPVMLKEVLHYLDIQPGQGEGSRLSIFHVVLDMTFGGGGHTKAILSMVPEV 108

Query: 60  NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD-----KGVDGVVFDLGVS 114
            V+ALDRDP A+S  ++  ++   Q +     FSQL   + D       VD V+ D G S
Sbjct: 109 KVLALDRDPTAISLAEKLAKESSGQVTPLLGRFSQLDVLLSDLKVKPGSVDAVLLDAGCS 168

Query: 115 SMQIDCGDRGFSFQKSGPLDMRMS--------------------------------CSGI 142
           SMQ+D  +RGFS  K GPLDMRM                                     
Sbjct: 169 SMQMDQAERGFSLSKDGPLDMRMDGESRISELSAFATVSKDMTSSSLIGLCFVRRYPEMP 228

Query: 143 SASDVVNQA-NVKDLTRILGILGEE--------------KQASRIAHAIVKR-------R 180
           SA+DVVN   +        G+ G E               Q      A  +R       +
Sbjct: 229 SAADVVNTPGSTGSCIHHHGLRGGEMGRENRFSHCGGTSHQPHHPDAAAGQRGGSGQTVK 288

Query: 181 QSAPFQTTQDLSSLIQKTVYFSK---NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
           +  P Q+ +   SL     Y  K       H AT++FQAL IFVN+E++EL  GLR+A +
Sbjct: 289 RLRPQQSARRFRSLPAAVAYARKDRLRRPAHAATKTFQALCIFVNDELKELHAGLRAARE 348

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRS------GKVMAVRHMIPSNAHPAV---FQSI 288
           AL+ GG L V++FHSLEDRLVK+F                 +  +P   + A    +  +
Sbjct: 349 ALRPGGRLCVITFHSLEDRLVKRFLRGHDLAHSDQQLFRPGKRDLPKETNTAESAHWLLL 408

Query: 289 TKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
            +KV+ P ++DV  N R RSAKLRA +R
Sbjct: 409 RRKVIAPERDDVRDNPRGRSAKLRAALR 436


>gi|322379450|ref|ZP_08053820.1| S-adenosyl-methyltransferase MraW [Helicobacter suis HS1]
 gi|322380939|ref|ZP_08055005.1| S-adenosyl-methyltransferase MraW [Helicobacter suis HS5]
 gi|321146611|gb|EFX41445.1| S-adenosyl-methyltransferase MraW [Helicobacter suis HS5]
 gi|321148159|gb|EFX42689.1| S-adenosyl-methyltransferase MraW [Helicobacter suis HS1]
          Length = 303

 Score =  262 bits (670), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 98/303 (32%), Positives = 156/303 (51%), Gaps = 33/303 (10%)

Query: 20  HVPVLLEKVIALLN----PAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSC 73
           H  VLLE+V+A+           V++D T G GG++ +  +   N+  + ++RD  A   
Sbjct: 21  HQSVLLEEVVAIFQEVIQSHSEPVLIDCTLGLGGHTLALLQTYPNLRVVGIERDKEASEQ 80

Query: 74  GQETMRDYKEQFSLFQATFS-QLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
             E +  +  +FS     F+  L   + +  + GV+ DLGVSS+Q+D  DRGFSF     
Sbjct: 81  ALEKLTPFAHRFSFKSGNFATILPSLLKENRICGVLADLGVSSLQLDHLDRGFSFNAP-T 139

Query: 133 LDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM     + AS V+N  +   L +IL   GE     ++A+ IV+ R   PF + +D 
Sbjct: 140 LDMRMDIDQSLDASKVINTYSAYALEKIL-QAGEVYAPKKMANLIVQNR---PFYSAKDF 195

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           +  I +    S++++ HPAT  FQA+R+ VN+E+  L Q L   +       ++ ++SFH
Sbjct: 196 ADFISQH---SRHSKHHPATLIFQAIRMEVNSEMHNLDQLLECVQSL--KEAIVCIISFH 250

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR VK  F   +                     + KK ++P+++ +  NRR+RSAK+
Sbjct: 251 SLEDRKVKHAFKEWAQN---------------RGVLLFKKPIIPSKKAIQENRRARSAKM 295

Query: 312 RAG 314
           RA 
Sbjct: 296 RAF 298


>gi|269469017|gb|EEZ80581.1| S-adenosylmethionine-dependent methyltransferase [uncultured SUP05
           cluster bacterium]
          Length = 233

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 90/219 (41%), Positives = 134/219 (61%), Gaps = 7/219 (3%)

Query: 103 GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILG 161
            +DG++ DLGVSS Q+D   RGFSF   GPLDMRM  + G+SA+  +  AN  ++  +L 
Sbjct: 13  KIDGILMDLGVSSPQLDNAQRGFSFNHDGPLDMRMDQTQGMSAAQWLTSANETEIADVLY 72

Query: 162 ILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFV 221
             GEE+++ RIA AI + +Q     TT  L+++I   +   KN   HPATRSFQA+RIF+
Sbjct: 73  QYGEERKSRRIASAIKRYQQDKSIDTTLQLANIIASVIKTQKN--KHPATRSFQAIRIFI 130

Query: 222 NNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVR--HMIPSN 279
           N E+++L++ L    + L  GG L+V+SFHS+EDR+VK+F    S +  A +   ++ S 
Sbjct: 131 NQELKQLSETLDQIIELLACGGRLVVISFHSIEDRIVKQFIQKHSRQKQAPKGLPVMDSE 190

Query: 280 AHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318
                 + + KK    ++E++  N+RSRSA LR   RT 
Sbjct: 191 FKKTALKDLGKK--FASKEELQTNKRSRSAILRTAQRTE 227


>gi|321310206|ref|YP_004192535.1| rRNA small subunit methyltransferase H [Mycoplasma haemofelis str.
           Langford 1]
 gi|319802050|emb|CBY92696.1| rRNA small subunit methyltransferase H [Mycoplasma haemofelis str.
           Langford 1]
          Length = 301

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 91/305 (29%), Positives = 161/305 (52%), Gaps = 13/305 (4%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRD 80
           + ++V++ L  +   + LD TFGAGG+SR         S +I LD D  AV  G + +  
Sbjct: 1   MSDEVVSYLLGSKDGLYLDCTFGAGGHSRQLLSKISSQSKLIGLDIDSVAVEMG-KKLEQ 59

Query: 81  YKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
             ++FS+ +  F++L DY  +  +    G++FDLG S MQ+    RGFS+ +   LDMRM
Sbjct: 60  EDDRFSMVRLNFARLSDYQKENNLPKARGIIFDLGTSMMQLRDPSRGFSYLEDAHLDMRM 119

Query: 138 SC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAP-FQTTQDLSSLI 195
              S  +A+D++N  +   L  I    G+   + R+ + I   R+     +TT +   LI
Sbjct: 120 DQTSKTTAADILNYGSRMQLKDIFRKYGDIHNSDRLINLISDHRKKYSCIETTLEFRDLI 179

Query: 196 QKTVYFSKNNR-IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254
           ++        R     +R+FQA+RI VN+EI+     + S  + L+ GG+  +++FHS E
Sbjct: 180 EEAHKKLDPVRLRKEISRTFQAIRIAVNDEIKSFEMAMNSLHEVLEVGGVACIITFHSGE 239

Query: 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           + ++K +  S+    + +R    +  +   F+ ++   +VPT++++A NR SRS+KL   
Sbjct: 240 EDVLKTW-KSKYCDHIEIRDYSKNMVNK--FRFVSNGYIVPTEKEIAENRSSRSSKLWVF 296

Query: 315 MRTVE 319
            +  +
Sbjct: 297 QKVRD 301


>gi|5834377|gb|AAD53943.1|AF179611_27 conserved hypothetical protein [Zymomonas mobilis subsp. mobilis
           ZM4]
          Length = 276

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 113/272 (41%), Positives = 161/272 (59%), Gaps = 8/272 (2%)

Query: 67  DPFAVSCGQETMRDYKEQFSLFQATFSQL---QDYVPDKGVDGVVFDLGVSSMQIDCGDR 123
           DP A+  G   +  YK +  L    FS +    D +  K VDG+VFD+GVSSMQID  +R
Sbjct: 1   DPDAIREGASLVEKYKGRLRLVNDCFSNIGHHLDALDIKTVDGMVFDIGVSSMQIDRPER 60

Query: 124 GFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           GFS Q  GPLDMRM+ +G+SA +++N A  KD+  +L + GEE+Q+ R+A AIV  R +A
Sbjct: 61  GFSIQADGPLDMRMAQAGLSAEELLNNAQEKDIADVLYLYGEERQSRRVATAIV--RGTA 118

Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
             +    L+ +I++++ +   ++  PA   FQA+RI +N E++EL  GL++AE+ LK  G
Sbjct: 119 FKRRLFRLAKVIRQSLGYRPFDKKDPAAHCFQAIRIHLNRELDELKDGLQTAERFLKTKG 178

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAF 302
            L VV+FHSLEDR+VK F    +G+     RH         VF S   + V   + ++A 
Sbjct: 179 CLAVVTFHSLEDRIVKHFMREHAGQTGQVSRHQPVIPQQNPVFFSKPARPVRAGETELAR 238

Query: 303 NRRSRSAKLRAGMRTVERSIEDDSF--VHLPR 332
           N R+RSA LRA  RT     ED S    H+PR
Sbjct: 239 NPRARSATLRAVYRTETPFSEDISRPDTHIPR 270


>gi|304163|gb|AAC36835.1| Putative product of orfB has significant sequence identity to
           putative product of orfB sequence upstream of pbpB gene
           in E.coli. putative [Bacillus subtilis]
          Length = 204

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 78/202 (38%), Positives = 114/202 (56%), Gaps = 3/202 (1%)

Query: 118 IDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
           +D  +RGFS+    PLDMRM  S  +SA +VVN+   +DL RI    GEEK + +IA  I
Sbjct: 1   LDTPERGFSYHHDAPLDMRMDQSATLSAKEVVNEWRYEDLVRIFFKYGEEKFSKQIARKI 60

Query: 177 VKRRQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
            + R  +P QTT  L  LI+  +   ++ +  HPA R FQA+RI VN+E+    + L  A
Sbjct: 61  EEARMKSPIQTTGQLVDLIKDAIPAPARRSGGHPAKRVFQAIRIAVNDELRVFEEALEQA 120

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSG-KVMAVRHMIPSNAHPAVFQSITKKVVV 294
            + LK GG + V++FHSLEDR+ K  F  +S    +     +         + IT+K + 
Sbjct: 121 IEVLKPGGRVSVITFHSLEDRICKTTFKEKSSLPELPPGLPVIPEEFEPELKLITRKPIT 180

Query: 295 PTQEDVAFNRRSRSAKLRAGMR 316
            +QE++  N R+RSAKLR   +
Sbjct: 181 ASQEELEENNRARSAKLRIAEK 202


>gi|260826594|ref|XP_002608250.1| hypothetical protein BRAFLDRAFT_87928 [Branchiostoma floridae]
 gi|229293601|gb|EEN64260.1| hypothetical protein BRAFLDRAFT_87928 [Branchiostoma floridae]
          Length = 280

 Score =  253 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 94/237 (39%), Positives = 133/237 (56%), Gaps = 20/237 (8%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQE 76
            H PV++ +V+  L+P PG+V +D TFGAGG++++      +  V A+DRDP A +  Q 
Sbjct: 2   PHTPVMVREVLDCLDPQPGQVYVDMTFGAGGHTKAILAAQPDTVVYAIDRDPAAHNMAQN 61

Query: 77  TMRDYKEQFSLFQATFSQLQDYV-----PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
             + Y +        FS+L   +      +  VDG +FD+G SSMQ D G RGFS  + G
Sbjct: 62  IAKQYGKSIRPVLGRFSELLYLLSSQNVQENTVDGFLFDVGASSMQFDQGGRGFSLSQDG 121

Query: 132 PLDMRMSCSG-----ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           PLDMRM          +A+DVVN     DL  I+   GEEK A +I+ AIV  R   P  
Sbjct: 122 PLDMRMDGERFGNKQPTAADVVNSLGEDDLYGIIKTYGEEKHARKISSAIVDARNKIPIT 181

Query: 187 TTQDLSSLIQKTVYFSK--------NNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           TT+ L+ ++   +            N  +HPAT++FQALRIFVN+E+ EL QGL++A
Sbjct: 182 TTKQLAGVVASALAPPGVFFAHDKLNRAVHPATKTFQALRIFVNDELNELYQGLQAA 238


>gi|296124253|ref|YP_003632031.1| S-adenosyl-methyltransferase MraW [Planctomyces limnophilus DSM
           3776]
 gi|296016593|gb|ADG69832.1| S-adenosyl-methyltransferase MraW [Planctomyces limnophilus DSM
           3776]
          Length = 378

 Score =  252 bits (643), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 91/315 (28%), Positives = 160/315 (50%), Gaps = 28/315 (8%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVS 72
             G H P+++++++ +L P  G+  +D T G GG+++   +       ++ +D DP  + 
Sbjct: 75  PAGTHRPIMVDEILQVLAPQAGERGIDCTLGFGGHAQQLLRAIQPDGCLLGIDADPIELP 134

Query: 73  CGQETMRDYK---EQFSLFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFS 126
             +  +R      E   + +  F+ L   +P     G D ++ DLG+SSMQID   RGF+
Sbjct: 135 KTEARLRSAGFPAETLMVQRTNFAALPGLIPAFLPGGADFLMADLGLSSMQIDDPARGFT 194

Query: 127 FQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           F+   PLDMRM+ S G SA++ + + + + L ++L    +E  A  +A  ++  +Q + F
Sbjct: 195 FKVDAPLDMRMNPSRGPSAAEFLAKIDERGLAKLLEDAADEPCAEPLARGLITAQQISAF 254

Query: 186 QTTQDLSSLIQKTVYF----SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKA 241
            TT  L+  +++ +       + +      R FQA+RI VN+E   L   L+S  + +K 
Sbjct: 255 ITTGQLAEAVRRVLATIGSLDEEDVSSTIRRVFQAIRIAVNDEFSTLDILLKSIPQCVKP 314

Query: 242 GGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVA 301
           GG + +++FHS EDR VKK F +                   V++ I+ +V+  T ++  
Sbjct: 315 GGRIAILTFHSGEDRRVKKAFQAGLASG--------------VYREISSEVMRATPQERH 360

Query: 302 FNRRSRSAKLRAGMR 316
            N RS  AKLR  +R
Sbjct: 361 DNPRSIPAKLRWAIR 375


>gi|254671182|emb|CBA08306.1| S-adenosyl-methyltransferase [Neisseria meningitidis alpha153]
          Length = 249

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 86/214 (40%), Positives = 124/214 (57%), Gaps = 3/214 (1%)

Query: 112 GVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQAS 170
           G+SS QID G RGFSF+   PLDMRM  + G+SA++ +  A+ +DL  ++   GEE+ + 
Sbjct: 27  GISSPQIDDGSRGFSFRFDAPLDMRMDTTRGMSAAEWIAVASEQDLHEVIKNYGEERFSR 86

Query: 171 RIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQ 230
           +IA AIV +R  +P  TT+ L+ ++ + V   +  +  PATR+FQA+RIF+N E+EE+  
Sbjct: 87  QIARAIVAQRAESPIDTTRKLAQIVAQNVRTRERGQ-DPATRTFQAVRIFINRELEEVGA 145

Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH-PAVFQSIT 289
            L      LK GG L V++FHSLEDR+VK+F    S      R      A  P     I 
Sbjct: 146 VLPQVMCRLKEGGRLAVIAFHSLEDRIVKQFVKKYSQHAPLPRWAAVREADLPEPPLKIV 205

Query: 290 KKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIE 323
            + + P + ++A N R+RSA LR   RT     E
Sbjct: 206 GRALKPGEAEIAANPRARSAVLRVAERTAGPIPE 239


>gi|298711101|emb|CBJ32330.1| S-adenosyl-methyltransferase MraW [Ectocarpus siliculosus]
          Length = 332

 Score =  249 bits (637), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 96/326 (29%), Positives = 144/326 (44%), Gaps = 88/326 (26%)

Query: 26  EKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK 82
            +V+  L   P  V +D T G GG+S +       G+ VI LDRDP A+      +    
Sbjct: 4   REVLEWLITKPDGVYVDCTLGGGGHSAALLSALGAGARVIGLDRDPDALREASARLAAEA 63

Query: 83  E--QFSLFQATFSQLQDYVPDKG--------------------------------VDGVV 108
           E  +F   ++ F+ +   V +                                  VDG++
Sbjct: 64  EVGRFQAVRSNFAAVGRAVRECELMLQQPPLAPEASTAPAPAAGVPPRTTSAGPLVDGIL 123

Query: 109 FDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSG--------------------------- 141
            DLGVSS QID   RGFSF   GPLDMRM  +G                           
Sbjct: 124 VDLGVSSHQIDDEARGFSFSADGPLDMRMEGTGDGDSVGERSGFGGVASTSREHEDRAVE 183

Query: 142 -------------------ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
                              +SA+DVVN A+  ++  ++   G+EK++++IA AIV+ R  
Sbjct: 184 KGGRGEGGGGGDGRGGGGGVSAADVVNFADESEIREMVWRYGDEKRSTKIARAIVENR-- 241

Query: 183 APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
            P  TT  L+ ++ +     +  R+    R FQALRI VN E++ L   L  A+  ++ G
Sbjct: 242 -PIATTGQLAEVVGRCAPPKE--RVKTLARVFQALRIEVNGELDALEALLEQAKHLVRPG 298

Query: 243 GLLIVVSFHSLEDRLVKKFFASRSGK 268
           G L+++S+HSLEDR VK+  A+ + K
Sbjct: 299 GRLLILSYHSLEDRRVKRVLATGNLK 324


>gi|327330609|gb|EGE72355.1| S-adenosyl-methyltransferase MraW [Propionibacterium acnes
           HL097PA1]
          Length = 241

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 89/227 (39%), Positives = 123/227 (54%), Gaps = 3/227 (1%)

Query: 95  LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANV 153
           + D +    VD V+ DLG+SS QID  +RGFS+    PLDMRM  S G +A+ ++N+++ 
Sbjct: 1   MLDDLGLDYVDSVLLDLGLSSFQIDEVERGFSYSVDSPLDMRMDQSSGRTAAQILNESDP 60

Query: 154 KDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYF--SKNNRIHPAT 211
             L R+L   GEEK A RI  AIV  R   P +T+  L  +I + +     +    HPA 
Sbjct: 61  GALVRMLREYGEEKFADRIVRAIVTERDRQPIETSGRLVEIITEAIPATVRRKRHSHPAK 120

Query: 212 RSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMA 271
           R+FQALRI VN E+E L   L  A   L  GG ++V+S+HSLEDR VK+ F         
Sbjct: 121 RTFQALRIAVNREMETLPAVLPRALDRLDVGGRIVVLSYHSLEDRPVKEAFRDACADTAP 180

Query: 272 VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318
               +   +  A F  +T+    P  ++VA N RS SA+LR   R  
Sbjct: 181 AGLPMVPESMAAKFNPVTRGAERPDADEVATNPRSASARLRVIERVR 227


>gi|226328337|ref|ZP_03803855.1| hypothetical protein PROPEN_02231 [Proteus penneri ATCC 35198]
 gi|225203070|gb|EEG85424.1| hypothetical protein PROPEN_02231 [Proteus penneri ATCC 35198]
          Length = 216

 Score =  247 bits (630), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 93/219 (42%), Positives = 126/219 (57%), Gaps = 10/219 (4%)

Query: 108 VFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEE 166
           + DLGVSS Q+D  +RGFSF + GPLDMRM   SG SA+  +  A   D+T +L   GEE
Sbjct: 1   MLDLGVSSPQLDDPERGFSFMRDGPLDMRMDPTSGQSAAQWLMTAEEDDITWVLKTFGEE 60

Query: 167 KQASRIAHAIVKRRQ-SAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEI 225
           + A RIA AIV R +   P   T+ L+ LI       + ++ HPATRSFQA+RI++N+E+
Sbjct: 61  RFAKRIARAIVARNKTEEPLTRTKQLADLISDASPVKERHK-HPATRSFQAIRIYINSEL 119

Query: 226 EELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH---- 281
           +E+ + L+ A   L   G L V+SFHSLEDRLVK+F    S   +    +  + A     
Sbjct: 120 DEIEKALKGAVSVLAPEGRLSVISFHSLEDRLVKRFIRDESKGPVVPAGIPLTEAQIKEL 179

Query: 282 -PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319
             A   SI K  + PT  +V  N R+RS+ LR   R  E
Sbjct: 180 GSARLSSIHK--MKPTGVEVEENPRARSSVLRVAQRIEE 216


>gi|15639375|ref|NP_218824.1| hypothetical protein TP0384 [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189025617|ref|YP_001933389.1| hypothetical protein TPASS_0384 [Treponema pallidum subsp. pallidum
           SS14]
 gi|8134809|sp|O83399|RSMH_TREPA RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|262825951|sp|B2S2Y1|RSMH_TREPS RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|3322662|gb|AAC65368.1| conserved hypothetical protein [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189018192|gb|ACD70810.1| hypothetical protein TPASS_0384 [Treponema pallidum subsp. pallidum
           SS14]
 gi|291059774|gb|ADD72509.1| S-adenosyl-methyltransferase MraW [Treponema pallidum subsp.
           pallidum str. Chicago]
          Length = 379

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 94/330 (28%), Positives = 147/330 (44%), Gaps = 53/330 (16%)

Query: 20  HVPVLLEKVIALLNPAPGKV--------------ILDATFGAGGYSRSFCKMGSNVIAL- 64
           H PVL+++ + LL PA   +               +D T G GG++++F      + AL 
Sbjct: 29  HQPVLVQECLTLLEPAIVGISRGADSTRDGAGAFFIDGTLGDGGHTQAFLHAYPALRALG 88

Query: 65  -DRDPFAVSCGQETMRDYKEQFSLFQATFSQL----------------------QDYVPD 101
            + DP  ++  +  +  + ++                                       
Sbjct: 89  VEIDPSMLARARARLTPFGKRLRYVLGWSDVFFASAYASAPASPATGRTAAGAAGVPGAY 148

Query: 102 KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRIL 160
                V+ DLG+S        RGFSF +   LDMR+      +A+D++N+     L ++ 
Sbjct: 149 PAPQAVLLDLGISFFHYRGAMRGFSFAEEHMLDMRLDPQASQTAADLLNRLPQARLAQLF 208

Query: 161 GILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVY------FSKNN-------RI 207
              GEE+ A RIA A+  +R+ APF + +  + ++ + V       F K         ++
Sbjct: 209 FEGGEERYARRIAQAVCAQRRQAPFCSARAFAEVVARVVPPMRTARFGKRRGVLGVLPKL 268

Query: 208 HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSG 267
           HPAT++FQALRI VN E+E L + L +A  AL  GG L V+SFHS EDR+VK  F   + 
Sbjct: 269 HPATKAFQALRIAVNRELERLPRLLTAAFTALAPGGRLAVISFHSREDRIVKVHFRHWAK 328

Query: 268 KVMAV-RHMIPSNAHPAVFQSITKKVVVPT 296
           +     R  I S    A    ITKK +VP+
Sbjct: 329 RCSCPARVPICSCGGVARASLITKKPLVPS 358


>gi|71031997|ref|XP_765640.1| S-adenosyl-methyltransferase mraW [Theileria parva strain Muguga]
 gi|68352597|gb|EAN33357.1| S-adenosyl-methyltransferase mraW, putative [Theileria parva]
          Length = 389

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 89/294 (30%), Positives = 146/294 (49%), Gaps = 50/294 (17%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
           +H+PV+L++ +  L   P  + LD T G GG++    +       +I++DRDP +V   +
Sbjct: 72  EHIPVMLKESMEYLITDPKGLYLDVTLGYGGHTEEILRRLNPKGKLISIDRDPESVYFNR 131

Query: 76  ETMRDYKE--QFSLFQATFSQLQDYVPDK-----GVDG---------------------- 106
           + ++ Y E  + S+    FS + D +        G  G                      
Sbjct: 132 KRLKSYIEESRLSVEIGKFSGIIDLLKSHKLPTEGYTGFFLPILLFKLVISTLYLLYKEF 191

Query: 107 -VVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC----------------SGISASDVVN 149
            +V DLG+S+ Q++   RGFS+ K+GPLDMRMS                 S  +A  +VN
Sbjct: 192 RIVADLGLSTHQLENSKRGFSYMKNGPLDMRMSSPLNDPFNPNFKIDVKSSENTAYQLVN 251

Query: 150 QANVKDLTRILGILGEEKQASRIAHAIV-KRRQSAPFQTTQDLSSLIQKTVYFSKNNRIH 208
           +++   L +I    G+E +A+ IA  I+ KRR      +T+ L S++  ++     +++ 
Sbjct: 252 KSDESTLRKIFKEFGQEPRAASIAKKIIEKRRILGEIDSTEKLKSVVMDSLPMFHRSKMR 311

Query: 209 PATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFF 262
             +R FQALRI VN+E+ EL+  L    + LK  G  + +S+H+LEDRLVK  F
Sbjct: 312 TLSRIFQALRIKVNDELNELSSFLNFIPQLLKYNGRFVCISYHALEDRLVKNSF 365


>gi|323455669|gb|EGB11537.1| mraW S-adenosyl-L-methionine-dependent methyltransferase-like
           protein [Aureococcus anophagefferens]
          Length = 404

 Score =  245 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 85/313 (27%), Positives = 146/313 (46%), Gaps = 27/313 (8%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVS 72
             G HVP+++ + +  L      V +D T G GG+S +       G+ ++ +DRD   ++
Sbjct: 104 PAGTHVPIMVAECLEHLRVGDAAVAVDCTLGYGGHSTALVAALPRGARLLGVDRDGEELA 163

Query: 73  CGQETMRDYK----EQFSL--FQATFSQLQDYVPDKG--VDGVVFDLGVSSMQIDCGDRG 124
                + +       + +L    + ++ + D +  +G  VD ++ DLG SSMQ+D  +RG
Sbjct: 164 KTAARLAEAPRAASGEVTLEQMHSNYAAVGDELARRGLAVDALLADLGCSSMQVDDPERG 223

Query: 125 FSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
           F++++ GPLDMRM  S G +A+D + +++  D+        +  +      A+  RR   
Sbjct: 224 FTYKREGPLDMRMDTSRGETAADWLARSSTADVAAAFRTAADFGKRDARELAVAARRAPT 283

Query: 184 PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
           P  TT   +  ++      +        R+ QALR+ VN+E   L   L S   AL  GG
Sbjct: 284 PATTTA-FAERVRGVALEEETADDDAVKRAMQALRVAVNDEFASLDALLASLPDALAPGG 342

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
             +V++FHS EDR VK+ F                     V+ ++ ++ V  + E+   N
Sbjct: 343 RAVVLTFHSGEDRRVKQAFKK--------------GLAANVYSAVARRPVRASPEERRAN 388

Query: 304 RRSRSAKLRAGMR 316
            RS   KLR  +R
Sbjct: 389 SRSGCCKLRWCVR 401


>gi|118594404|ref|ZP_01551751.1| methyltransferase [Methylophilales bacterium HTCC2181]
 gi|118440182|gb|EAV46809.1| methyltransferase [Methylophilales bacterium HTCC2181]
          Length = 213

 Score =  245 bits (625), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 87/215 (40%), Positives = 126/215 (58%), Gaps = 6/215 (2%)

Query: 109 FDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGI-SASDVVNQANVKDLTRILGILGEEK 167
            DLG+SS Q+D  +RGFSF+  G LDMRM+   + +A+D+VN  +  +L  IL + GEE+
Sbjct: 1   MDLGISSPQVDNAERGFSFRLDGQLDMRMNQDHLETAADIVNSYDEAELIYILKVYGEER 60

Query: 168 QASRIAHAIVKRRQS-APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIE 226
            A RIA +IV  R      + T  L+ +I K V   +  +  PATR+FQALRI VN EIE
Sbjct: 61  FAKRIARSIVAHRADVGRIEKTIQLAQIINKAVPKREPGK-DPATRTFQALRIKVNQEIE 119

Query: 227 ELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP--SNAHPAV 284
           E+ + L  A   L   G + V+SFHSLEDR+VK F   +    +  +++    S    + 
Sbjct: 120 EIEKALPIAFDLLNKNGRIAVISFHSLEDRVVKNFAKQQLETDLIPKYIPIKASEIRKSN 179

Query: 285 FQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319
            + I  K+++P++ ++  N RSRSAKLR   R  E
Sbjct: 180 LKKI-GKLIIPSEIEIKENPRSRSAKLRVIERIEE 213


>gi|87309877|ref|ZP_01092011.1| hypothetical protein DSM3645_03658 [Blastopirellula marina DSM
           3645]
 gi|87287641|gb|EAQ79541.1| hypothetical protein DSM3645_03658 [Blastopirellula marina DSM
           3645]
          Length = 262

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 104/281 (37%), Positives = 152/281 (54%), Gaps = 27/281 (9%)

Query: 45  FGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD 101
            G GG++R   +   +   VIA DRD  A+   ++++R    + +  Q  F +L   + D
Sbjct: 1   MGGGGHTRQLAERVGDEGLVIACDRDLAAIERAEQSLRGLPIKVT--QRNFCELPSVLQD 58

Query: 102 ---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS-CSGISASDVVNQANVKDLT 157
                +DG++ DLG+SS Q+   +RGFSF   GPLD+R     G +A+D+VN  + KDL 
Sbjct: 59  LEIDLIDGLLLDLGLSSDQLADRNRGFSFDSDGPLDLRFDETEGDTAADLVNLLSEKDLA 118

Query: 158 RILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQA 216
            ++   GEE+ + RIA  +  RR+  PF    DL+ L+           RIHPATR+FQA
Sbjct: 119 DVIYQNGEERLSRRIAKKVCLRRKEKPFLLASDLAELVTSCYPGRGARERIHPATRTFQA 178

Query: 217 LRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI 276
           LRI VN E+  L   L+SA   ++ GG + V+SFHSLEDR VK+ F              
Sbjct: 179 LRIAVNRELSSLESILKSAPDFIRPGGKIAVISFHSLEDRRVKEAFREDE---------- 228

Query: 277 PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
                    + +TKK ++P++E++  N RSRSAKLR   R 
Sbjct: 229 -------RLEPMTKKPIIPSEEEIMRNPRSRSAKLRVARRV 262


>gi|328773130|gb|EGF83167.1| hypothetical protein BATDEDRAFT_21617 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 434

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 101/297 (34%), Positives = 148/297 (49%), Gaps = 47/297 (15%)

Query: 16  TIGDHVPVLLEKVIALLNP----------------APGKVILDATFGAGGYSRSFC-KMG 58
           T  DH PVLL  V+ +L+P                   ++I DATFG GGY+++   KM 
Sbjct: 49  TKPDHKPVLLVPVVDILSPEFDLQSRERQSQRVRFQRPRLICDATFGNGGYTKALLDKMD 108

Query: 59  SNVIALDRDPFAVSCGQET-MR-DYKEQFSLFQATFSQLQDYVP------DKGVDGVVFD 110
             V  +D+DP A+    +  ++ +YK +       FS +Q+ +       +  +DG+VFD
Sbjct: 109 CKVFCVDQDPLAIERAMDMSLKPEYKNRLIPIHGKFSDIQNLIAPYTASHEACLDGIVFD 168

Query: 111 LGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQAS 170
           +G+SS Q+D   RGFSF+K GPLD                    DL RIL   GEEK A 
Sbjct: 169 IGISSNQLDDASRGFSFRKDGPLD----------------YPEMDLVRILQQYGEEKNAY 212

Query: 171 RIAHAIVKRRQSAPFQTTQDLSSLIQKTVYF---SKNNRIHPATRSFQALRIFVNNEIEE 227
           +I   I   R      TT  L+ +I K V      +    HPA ++   +RI++N+E+++
Sbjct: 213 KIVRMIAAIRSKTYINTTTQLAQIIAKAVGKEEHWQQGHKHPAMKT---IRIYINDELKQ 269

Query: 228 LAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV 284
           L QGL  AE+ LK  G  +VV+FHSLEDR+VK+FF + +  V       P     + 
Sbjct: 270 LQQGLVMAERLLKPDGRCVVVTFHSLEDRIVKRFFQACAQGVTPDELPPPMTQQESR 326



 Score = 66.7 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 25/46 (54%)

Query: 276 IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERS 321
           +           ++KK +VP ++++  N RSRSAKLRA  RT   +
Sbjct: 383 VKETGREPSMIPLSKKAIVPDEKEMQENSRSRSAKLRAARRTNHPT 428


>gi|326518102|dbj|BAK07303.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 272

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 88/253 (34%), Positives = 125/253 (49%), Gaps = 20/253 (7%)

Query: 84  QFSLFQATFSQLQDYVPD--KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-S 140
            F   +     + + + D   GVDG++ DLG+SSMQ++  DRGFS    GPLDMRM   +
Sbjct: 19  NFKYIKHVLGGVDESLADGSCGVDGILIDLGMSSMQVNRSDRGFSVLNDGPLDMRMDPRA 78

Query: 141 GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT-- 198
            ++A D++N     ++ RIL   GEE     +   IVK R++    +T +L  LIQ+T  
Sbjct: 79  TLTAEDILNSWPELEVGRILRDYGEESNWQSLQRRIVKERKTGGLHSTGELVKLIQRTCT 138

Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258
           +   +   I  ATR FQALRI VN+E+  L   L S    L   G L V+SFHSLEDR+V
Sbjct: 139 ISGGRQGWIKTATRVFQALRIAVNDELRTLEDALHSCFDCLATDGRLAVISFHSLEDRIV 198

Query: 259 KKFFAS---------------RSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
           K+ F                  +                     +TK+ + P+QE+   N
Sbjct: 199 KQTFLELIHGGEADGDDDDLAYADIDDEDEPWFKQRVQGTNGTVLTKRPITPSQEEEKLN 258

Query: 304 RRSRSAKLRAGMR 316
           +R RSAKLR   +
Sbjct: 259 QRCRSAKLRVIQK 271


>gi|56808163|ref|ZP_00365945.1| COG0275: Predicted S-adenosylmethionine-dependent methyltransferase
           involved in cell envelope biogenesis [Streptococcus
           pyogenes M49 591]
          Length = 215

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 71/217 (32%), Positives = 112/217 (51%), Gaps = 15/217 (6%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M+   H     HV VLL + + +L+  P  + +DAT G  G+S           ++   D
Sbjct: 1   MTKEFH-----HVTVLLHETVDMLDIKPDGIYVDATLGGSGHSAYLLSKLGEEGHLYCFD 55

Query: 66  RDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120
           +D  A+   Q T++ Y  K Q +  +  F  L+  +   GV   DG+++DLGVSS Q+D 
Sbjct: 56  QDQKAIDNAQVTLKSYIDKGQVTFIKDNFRHLKARLTALGVDEIDGILYDLGVSSPQLDE 115

Query: 121 GDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
            +RGFS+++  PLDMRM     ++A +VVN     DL +I    GE+K + +IA  I + 
Sbjct: 116 RERGFSYKQDAPLDMRMDRQSLLTAYEVVNTYPFNDLVKIFFKYGEDKFSKQIARKIEQA 175

Query: 180 RQSAPFQTTQDLSSLIQKTVYFSK-NNRIHPATRSFQ 215
           R   P + T +L+ LI+      +   + HPA + FQ
Sbjct: 176 RAIKPIEATTELAELIKAAKPAKELKKKGHPAKQIFQ 212


>gi|254468248|ref|ZP_05081654.1| S-adenosyl-methyltransferase MraW [beta proteobacterium KB13]
 gi|207087058|gb|EDZ64341.1| S-adenosyl-methyltransferase MraW [beta proteobacterium KB13]
          Length = 212

 Score =  237 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 89/215 (41%), Positives = 123/215 (57%), Gaps = 11/215 (5%)

Query: 109 FDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEK 167
            DLGVSS Q+D   RGFSF  +GPLDMRM  S  + A +VVN+ N  DL +I    GEEK
Sbjct: 1   MDLGVSSPQLDDASRGFSFMHNGPLDMRMDQSQTLDACEVVNKYNESDLIKIFRDYGEEK 60

Query: 168 QASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEE 227
            A RIA  I K R      +T +L+++++K+V ++ N+R HPAT+ FQALRI VN E+ E
Sbjct: 61  FAKRIASNICKIRNEKNITSTLELANIVKKSVPYT-NSRKHPATKVFQALRIEVNQELNE 119

Query: 228 LAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVM-AVRHMIPSNAHPAVFQ 286
           L + L      LK  G L+ ++FHSLEDR+VK F    +      +   IP        +
Sbjct: 120 LKEALPLLFDVLKPQGRLLALTFHSLEDRIVKNFIKEITKLAPDTIPKFIPIRNTDHHEK 179

Query: 287 SITKKV-----VVPTQEDVAFNRRSRSAKLRAGMR 316
           +   K      ++ + E+V  N RSRSA+LR   +
Sbjct: 180 T---KANVICNLIASTEEVEANPRSRSARLRGVEK 211


>gi|38047597|gb|AAR09701.1| similar to Drosophila melanogaster CG14683 [Drosophila yakuba]
          Length = 251

 Score =  235 bits (601), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 91/244 (37%), Positives = 133/244 (54%), Gaps = 18/244 (7%)

Query: 37  GKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMR--DYKEQFSLFQATF 92
           G    D TFGAGG++R   +    + V ALDRDP A    ++     ++K +       F
Sbjct: 1   GGTYFDMTFGAGGHTRRLLEKCPEAKVYALDRDPLAHQLARDMSESEEFKGRLIPLLGKF 60

Query: 93  SQLQDYVPDKG-----VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS---CSGISA 144
           S L     + G     VDG++FD G SSMQ D   RGFS  + GPLDMRM      G++A
Sbjct: 61  SDLPKLFKEHGLAKNSVDGMLFDFGCSSMQFDEAVRGFSISRDGPLDMRMDGGHSGGVTA 120

Query: 145 SDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA-PFQTTQDLSSLIQKTVYFSK 203
           +DV+      DL +IL + GEEK A +IA  ++  R +    +TT+ L+ +I+  +    
Sbjct: 121 ADVLANVEEGDLVKILRMYGEEKAAKKIARGLIDARNALFKIETTKQLADIIENIMDGGS 180

Query: 204 NNRI-----HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258
                    H AT++FQA+RIFVNNE+ E+  G+  A + L+  G L+ ++FHSLED +V
Sbjct: 181 RKDKLRRHAHSATKTFQAIRIFVNNELNEINYGMVLANEILRVDGRLVTITFHSLEDTIV 240

Query: 259 KKFF 262
           K+  
Sbjct: 241 KRHI 244


>gi|223993323|ref|XP_002286345.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220977660|gb|EED95986.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 495

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 107/388 (27%), Positives = 156/388 (40%), Gaps = 112/388 (28%)

Query: 38  KVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDY------------- 81
           ++ +D T G GG+S++  +       +I  D DP A+S     + DY             
Sbjct: 112 RLFIDGTLGGGGHSQAILQQLRPCDVLIGCDVDPDALSTASNRLVDYLGTREYILGKSST 171

Query: 82  -------------KEQFSLFQATFSQLQDYVPD--------------------------- 101
                        +  F   Q+ F  L + +                             
Sbjct: 172 VDAEEMACQWEEGRPMFIPVQSNFRNLINVLSKVRHPVSGRLLLGSRDDSIGDGQKDAVE 231

Query: 102 --KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS------------CSGISASDV 147
              G +G++ DLGVSS QID G+RGF+F K GPLDMRMS             S ++A+D+
Sbjct: 232 FPNGANGMLLDLGVSSHQIDTGERGFAFMKEGPLDMRMSGNTPQISTSATIGSSLTAADI 291

Query: 148 VNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVY-FSKNNR 206
            N+ +   +  IL   G+E +A RIA AI+  R   P  TT DL   I      F++  R
Sbjct: 292 CNEFDEPTIIDILSTYGDEPRAKRIASAIIASR---PLYTTTDLVHAINSVTPTFARQKR 348

Query: 207 ---IHPATRSFQALRIFVNNEIEELAQGLRS-AEKAL--------------KAGGLLIVV 248
              I  + R FQALRI VN E   L   L   A   L              +  G+L V+
Sbjct: 349 AGLIATSARVFQALRIVVNEEDGALKDVLERVAPWVLCRSGGLMNVGDDEKRDDGILAVL 408

Query: 249 SFHSLEDRLVKKFFASRS-------------------GKVMAVRHMIPSNAHPAVFQSIT 289
           S+HS+ED++ K+     S                   G V+    ++        F+ + 
Sbjct: 409 SYHSMEDKMAKRVMRDGSVDFLDGGSKGGSVLERDMFGNVINGDGIVDDAKSHLPFEPV- 467

Query: 290 KKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
            K    T E++A N R+RSA LR G+R 
Sbjct: 468 GKPRKATDEEIAVNSRARSATLRVGIRN 495


>gi|125580743|gb|EAZ21674.1| hypothetical protein OsJ_05305 [Oryza sativa Japonica Group]
          Length = 439

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 92/298 (30%), Positives = 132/298 (44%), Gaps = 43/298 (14%)

Query: 62  IALDRDPFAVSCGQETMRDY-----------------------KEQFSLFQATFSQLQDY 98
           I +D DP A+  G+  +  +                        + F   +     + + 
Sbjct: 141 IGMDVDPSALEIGRSRIEAFLANRETNGDDEDASQGTLRAYTHAKNFKYIKHVLGSVDEN 200

Query: 99  VP--DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKD 155
           +     GVDG++ DLG+SSMQ++  DRGFS  + GPLDMRM     + A D++N     +
Sbjct: 201 IAVGTSGVDGILIDLGMSSMQVNRSDRGFSVLQDGPLDMRMDPKATLKAEDILNSWPDLE 260

Query: 156 LTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTV--YFSKNNRIHPATRS 213
           + RIL   GEE     +   IVK R      +T +L  LIQ+T      +   I  ATR 
Sbjct: 261 VGRILRDYGEESNWQSLQKRIVKARAMGGLHSTGELVKLIQRTCTSSGGRQGWIKTATRV 320

Query: 214 FQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVM--- 270
           FQALRI VN+E+  L   L +    L   G L V+SFHSLEDR+VK+ F     +     
Sbjct: 321 FQALRIAVNDELRTLEDALHACFDCLATDGRLAVISFHSLEDRIVKQTFLELIHEDEIDD 380

Query: 271 ------------AVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
                                        +TK+ + P+QE+   N+R RSAKLR   +
Sbjct: 381 DEDDLVSADIDSEDEPWFKQRVQGKNGTILTKRPISPSQEEEELNQRCRSAKLRVIQK 438


>gi|205355535|ref|ZP_03222306.1| hypothetical protein Cj8421_0691 [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|205346769|gb|EDZ33401.1| hypothetical protein Cj8421_0691 [Campylobacter jejuni subsp.
           jejuni CG8421]
          Length = 236

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 81/230 (35%), Positives = 123/230 (53%), Gaps = 7/230 (3%)

Query: 89  QATFSQ-LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC-SGISASD 146
           Q+ FS+ L+     + + G++ D+GVSS Q+D  +RGFS      LDMRM+  S ISA +
Sbjct: 2   QSNFSEVLEKISHKEELRGILADIGVSSFQLDNNERGFSVNSD-FLDMRMNQNSKISAYE 60

Query: 147 VVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNR 206
           ++N    + LT I    GE   A  IA  I   R   P ++ ++L  +I K      + +
Sbjct: 61  IINTYTKEQLTSIFKDYGELHDAHFIAEKICLERSKNPIKSAKELYQIIGK--GKQNHRK 118

Query: 207 IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRS 266
           I  AT +FQA+RI VN E++ L   L   E       +L ++SFHSLEDR+VK+FF   S
Sbjct: 119 ISKATLAFQAIRIEVNQELKVLKDFLEHLENLKPKNCILAIISFHSLEDRIVKQFFKKWS 178

Query: 267 GKVMAVRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
              +    +       + ++ Q ITKK +  ++E++  N RS  AK+RA 
Sbjct: 179 KNCICNEKIMRCECGNNHSLGQIITKKAISASKEELLKNSRSSCAKMRAF 228


>gi|145627903|ref|ZP_01783704.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae 22.1-21]
 gi|144979678|gb|EDJ89337.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae 22.1-21]
          Length = 223

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 86/226 (38%), Positives = 125/226 (55%), Gaps = 18/226 (7%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M+S    +  +H+ VLL + +  L      + +D TFG GG+SR           +IA+D
Sbjct: 1   MNSENSFSSSEHITVLLHEAVNGLALKENGIYIDGTFGRGGHSRFILSQLSSNGRLIAVD 60

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCG 121
           RDP A++   +       +F +   +FS + +          ++G++ DLGVSS Q+D  
Sbjct: 61  RDPRAIAEAHKI---QDSRFQIEHNSFSHIPEICDKLNLVGKINGILLDLGVSSPQLDEA 117

Query: 122 DRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF K GPLDMRM  + G+SA + + Q +++DLT +L   GEE+ A RIA AIV   
Sbjct: 118 ERGFSFMKDGPLDMRMDTTQGLSAEEWLKQVSIEDLTWVLKTFGEERFAKRIATAIVDFN 177

Query: 181 QSAP------FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIF 220
           +SA          T  L+ LI + V F K+   HPATRSFQA+RIF
Sbjct: 178 KSAVKNGTEFLSRTSQLAELISQAVPF-KDKHKHPATRSFQAIRIF 222


>gi|85057932|ref|YP_456848.1| hypothetical protein AYWB_652 [Aster yellows witches'-broom
           phytoplasma AYWB]
 gi|84790037|gb|ABC65769.1| conserved hypothetical protein [Aster yellows witches'-broom
           phytoplasma AYWB]
          Length = 202

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 82/209 (39%), Positives = 118/209 (56%), Gaps = 8/209 (3%)

Query: 111 LGVSSMQIDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQA 169
           +G+SS QID   RGFS+  + PLDMRM+ +  I+A  ++N  +   L  I  + GE K A
Sbjct: 1   MGLSSCQIDNPQRGFSYLHNTPLDMRMNINQTITAQYILNNYSFAQLKNIFKLYGEVKNA 60

Query: 170 SRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELA 229
           S +   I+K+R   P QT+ DL S+  +        + H A + FQALRI VN E+E L 
Sbjct: 61  SLVVSEIIKQR---PLQTSYDLVSITDRFCNL---QKGHSAKKIFQALRIEVNQELESLK 114

Query: 230 QGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT 289
           Q L  +   LK    ++V+SFHSLEDR++K FF   S  V+  +  I +         IT
Sbjct: 115 QALEQSLDLLKPNARIVVISFHSLEDRIIKHFFKKHSTFVLPKKLPI-AIIPQTPLSIIT 173

Query: 290 KKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318
           KK  +P++E++  N RS SAKLR  ++ V
Sbjct: 174 KKAFLPSEEEMQNNSRSISAKLRVAVKNV 202


>gi|258539486|ref|YP_003173985.1| S-adenosyl-methyltransferase MraW [Lactobacillus rhamnosus Lc 705]
 gi|257151162|emb|CAR90134.1| S-adenosyl-methyltransferase MraW [Lactobacillus rhamnosus Lc 705]
          Length = 214

 Score =  230 bits (586), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 70/206 (33%), Positives = 97/206 (47%), Gaps = 7/206 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73
           T   H  VLL++  A L        +DAT G GG++R          +IA D+D  A++ 
Sbjct: 2   TEFKHETVLLKEATAALAVKSDGTYVDATLGRGGHTRQILNQLTNGRLIAFDQDEAAIAA 61

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
            +        Q +L    F  L   + D     VDGV++DLGVSS Q D   RGFS++  
Sbjct: 62  VKRHFGTLPPQLTLVHRNFRDLSAALADLDIRQVDGVLYDLGVSSPQFDDSKRGFSYRFD 121

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
            PLDMRM     + A  +VN+    +L RI    GEE  + +IA  I + R  AP  TT 
Sbjct: 122 APLDMRMDQRQTLDAKTIVNEWPYAELVRIFSRYGEEHFSKQIARRIEQARAQAPITTTF 181

Query: 190 DLSSLIQKTVYFS-KNNRIHPATRSF 214
            L  LI+  +    +    HPA +S 
Sbjct: 182 QLVELIKAGIPAKARRTGGHPAKKSL 207


>gi|118354992|ref|XP_001010757.1| MraW methylase family protein [Tetrahymena thermophila]
 gi|89292524|gb|EAR90512.1| MraW methylase family protein [Tetrahymena thermophila SB210]
          Length = 422

 Score =  223 bits (568), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 83/321 (25%), Positives = 151/321 (47%), Gaps = 35/321 (10%)

Query: 20  HVPVLLEKVIALLN--------PAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPF 69
           H PVL++K+  +L             K ++D T G+ G+++ F +    +    LD DP 
Sbjct: 100 HYPVLIDKITQVLQEEFYPHSSSHSEKCLVDCTLGSAGHAKHFLQKFPYLYILGLDLDPR 159

Query: 70  AVSCGQETMRDY-----KEQFSLFQATFSQLQ----------DYVPDKGVDGVVFDLGVS 114
            +    + ++       + +F      F+ +           ++   K    +  DLG +
Sbjct: 160 MLQYINDNVKSQLSHSDQNRFKTRNENFTNIDKINLYKIFEEEFPSYKNFHAIFADLGYN 219

Query: 115 SMQIDCGDRGFSFQKSGPLDMRMSCSGIS--ASDVVNQANVKDLTRILGILGEEKQASRI 172
           ++ ++  + GFS+ ++G LDMR + S  +  A+D++N+A+  +L  I+   GE+  A  I
Sbjct: 220 TLHLENSEWGFSYLRNGKLDMRYNQSSQTNSAADILNKASYLELFEIIRQYGEDPNADVI 279

Query: 173 AHAIVKRRQSAPFQTTQDLSSLI--QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQ 230
           +  I+K+RQ  PF+TT+D+  LI   ++ Y  K  +    T+ FQALRI  N E+  L  
Sbjct: 280 SQMIIKQRQIKPFETTKDVVDLILEDQSGYSFKGGQYKAITKLFQALRIATNQELTNLQV 339

Query: 231 GLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK 290
            +      L   GL I+++FHSLE+ +V++         + +   I         + +  
Sbjct: 340 FMDKIYDKLLKDGLGIIITFHSLEENIVEQKLRD-----LVINRQIEVRKRQKNIEILQM 394

Query: 291 KVVVPTQEDVAFNRRSRSAKL 311
               P   ++  N +SRSAKL
Sbjct: 395 G-EKPDINELQKNSKSRSAKL 414


>gi|145349365|ref|XP_001419106.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579337|gb|ABO97399.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 254

 Score =  222 bits (566), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 82/256 (32%), Positives = 129/256 (50%), Gaps = 13/256 (5%)

Query: 20  HVPVLLEKVIALL-NPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
           H P +L + IA L  P    V +D TFG GG++R           + A D DP A+  G+
Sbjct: 1   HTPAMLAETIAALVAPDRSGVYVDGTFGRGGHTRGILAALSAEGRLHAFDMDPEAIKVGK 60

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGV--DGVVFDLGVSSMQIDCGDRGFSFQKSGPL 133
           E +     +F +  A F  + D +   GV   GV  DLG+SS Q D   RGF  ++ GPL
Sbjct: 61  E-LEREDSRFKIHHAPFGCMADVLRPLGVKPSGVFLDLGISSPQFDDSSRGFRPEQDGPL 119

Query: 134 DMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQA---SRIAHAIVKRRQSAPF-QTT 188
           D+R     G+ AS+ +   + ++L R++   GE        RI  AIV  R++     TT
Sbjct: 120 DLRFDVERGVPASEYLRLVSREELRRVIHEYGETTDPIAARRITDAIVLARENGSLPSTT 179

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
           ++ ++L+ K     +   +HPA  +FQALRI +N E +E+ +G+ +A   +   G L ++
Sbjct: 180 KEFAALVAKA-KGKEYQMMHPAKLTFQALRIALNQEFDEMRRGMHAAFDIMPEHGRLGIL 238

Query: 249 SFHSLEDRLVKKFFAS 264
           ++   E  +V  FF  
Sbjct: 239 TWKHSECAIVVDFFRD 254


>gi|256080680|ref|XP_002576606.1| S-adenosyl-methyltransferase mraW [Schistosoma mansoni]
 gi|238661881|emb|CAZ32843.1| S-adenosyl-methyltransferase mraW, putative [Schistosoma mansoni]
          Length = 260

 Score =  221 bits (565), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 98/257 (38%), Positives = 130/257 (50%), Gaps = 47/257 (18%)

Query: 90  ATFSQLQDYV-----PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISA 144
             FS L   +       + VD ++ DLGVSS+Q+D   RGF F+ + PLDMRM+ S    
Sbjct: 20  GRFSDLPQLLNGYNLKYQSVDLILMDLGVSSLQLDIESRGFGFKHNAPLDMRMNQSPN-- 77

Query: 145 SDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQTTQDLSSLIQKTVYFSK 203
                          + I GEE+ + RIA+AIV  R      QTT+ L+ LI   V  ++
Sbjct: 78  ---------------VHIYGEERLSKRIANAIVDYRNDVGSIQTTKQLADLIHSVVPMNR 122

Query: 204 NNR--IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKF 261
             R  IHPATR FQALRIF+N+E+ EL  GL  AE  LK GG L+V+SFHSLEDRLVK  
Sbjct: 123 EGRSSIHPATRVFQALRIFINDELNELCIGLELAEFLLKPGGYLVVLSFHSLEDRLVKWS 182

Query: 262 F---------------ASRSGKVMAVRHMIPSNA--HPAVFQSITK-----KVVVPTQED 299
           F                SR  + +  R     +     ++ Q  +K       + P+  +
Sbjct: 183 FHSDYKHLTLSKYLSQRSRHFQCINKRQEYEDDEISKESLGQIKSKWNCVIGPITPSDSE 242

Query: 300 VAFNRRSRSAKLRAGMR 316
           +  N RSRSAKLR   R
Sbjct: 243 IDSNPRSRSAKLRIAKR 259


>gi|330950233|gb|EGH50493.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae Cit 7]
          Length = 187

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 80/184 (43%), Positives = 119/184 (64%), Gaps = 6/184 (3%)

Query: 89  QATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GIS 143
           Q +F++L     ++G    V G++ DLGVSS Q+D  +RGFSF   GPLDMRM  + G+S
Sbjct: 2   QRSFAELGSETQERGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDGPLDMRMDPTRGVS 61

Query: 144 ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSK 203
           A++ +  A  +++ R+    GEE+ A R+A+A+V RR+  PF  T DL+ +++      +
Sbjct: 62  AAEFIATAPAEEIARVFKEYGEERFAKRMANAVVARREVQPFDRTADLAEVLKVANPAWE 121

Query: 204 NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFA 263
             + +PATR+FQ LRI VNNE+ +L  GL +A  AL+ GG L+V+SFHSLEDR+VK F  
Sbjct: 122 KGK-NPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLVVISFHSLEDRIVKLFMR 180

Query: 264 SRSG 267
             + 
Sbjct: 181 KLAK 184


>gi|330981226|gb|EGH79329.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 186

 Score =  216 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 68/181 (37%), Positives = 105/181 (58%), Gaps = 9/181 (4%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
           H+ VLLE+ +  L        LD TFG GG+SR           ++  D+DP A++ GQ 
Sbjct: 7   HITVLLEEAVEALAVRADGCYLDGTFGRGGHSRLILSQLGPDGRLLGFDKDPQAIATGQA 66

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
            +     +F + Q +F++L     ++G    V G++ DLGVSS Q+D  +RGFSF   GP
Sbjct: 67  -LAAEDGRFVIVQRSFAELGSETQERGLAGKVSGILLDLGVSSPQLDDPERGFSFMNDGP 125

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           LDMRM  + G+SA++ +  A  +++ R+    GEE+ A R+A+A+V RR+  PF+ T DL
Sbjct: 126 LDMRMDPTRGVSAAEFIATAPAEEIARVFKEYGEERFAKRMANAVVARREVQPFERTADL 185

Query: 192 S 192
           +
Sbjct: 186 A 186


>gi|165377202|ref|NP_689849.2| probable methyltransferase-like protein 15 isoform 2 [Homo sapiens]
 gi|119588674|gb|EAW68268.1| methyltransferase 5 domain containing 1, isoform CRA_c [Homo
           sapiens]
          Length = 273

 Score =  216 bits (550), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 76/189 (40%), Positives = 112/189 (59%), Gaps = 11/189 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H+PV++++V+  L+P  G++ LD TFG+GG++++  +  S+  + ALDRDP A +  +  
Sbjct: 72  HIPVMVDEVVHCLSPQKGQIFLDMTFGSGGHTKAILQKESDIVLYALDRDPTAYALAEHL 131

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              Y +Q       FSQ +  +   GV     DGV+ DLG SSMQ+D  +RGFS +K GP
Sbjct: 132 SELYPKQIRAMLGQFSQAEALLMKAGVQPGTFDGVLMDLGCSSMQLDTPERGFSLRKDGP 191

Query: 133 LDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           LDMRM         +A+DVVN  + + L  IL   GEEK A +IA AIV+ R   P   T
Sbjct: 192 LDMRMDGGRYPDMPTAADVVNALDQQALASILRTYGEEKHAKKIASAIVQARSIYPITRT 251

Query: 189 QDLSSLIQK 197
           Q L+S++ +
Sbjct: 252 QQLASIVAE 260


>gi|205373087|ref|ZP_03225892.1| S-adenosyl-methyltransferase MraW [Bacillus coahuilensis m4-4]
          Length = 184

 Score =  216 bits (550), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 57/169 (33%), Positives = 91/169 (53%), Gaps = 7/169 (4%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAV 71
             + +H  VLL + +  L   P  + +D T G  G+S         G ++ A D+D  A+
Sbjct: 11  ENMFNHTTVLLRETVDELKIKPNGIYVDCTLGGAGHSEYLLSQLGEGGHLFAFDQDETAL 70

Query: 72  SCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
               E +  Y ++ +  ++ F  L+  + +    GVDG+++DLGVSS Q+D  +RGFS+ 
Sbjct: 71  RHAAEKLNAYSDKVTYVKSNFRYLKSELTNLGVMGVDGILYDLGVSSPQLDTPERGFSYH 130

Query: 129 KSGPLDMRMSCSG-ISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
              PLDMRM   G +SA +VVN+ + + L RI    GEEK + +IA  +
Sbjct: 131 HDAPLDMRMDLQGAVSAYEVVNEWSYEKLVRIFFQYGEEKFSKQIARKM 179


>gi|13537286|dbj|BAB40632.1| hypothetical protein [Listonella pelagia]
          Length = 189

 Score =  215 bits (548), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 72/197 (36%), Positives = 102/197 (51%), Gaps = 19/197 (9%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           M+ A       H+ VLL + I  L   P    +D TFG GG+SR+          + ++D
Sbjct: 1   MTEAF-----KHISVLLNESIDGLAIKPDGTYIDGTFGRGGHSRTILSKLGENGRLFSID 55

Query: 66  RDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCG 121
           RDP A++  Q+       +F++    FS + +Y         VDGV+ DLGVSS Q+D  
Sbjct: 56  RDPQAIAEAQKI---DDPRFTIIHGPFSGMAEYAERYDLVGKVDGVLLDLGVSSPQLDDA 112

Query: 122 DRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +RGFSF K GPLDMRM   SG+  S  +  A + D+T ++   GE+K A RIA  IV  R
Sbjct: 113 ERGFSFMKDGPLDMRMDPTSGMPVSQWLMDAELDDITWVIREFGEDKHARRIAKGIVAYR 172

Query: 181 ---QSAPFQTTQDLSSL 194
              ++ P   T  L+ L
Sbjct: 173 ENEENEPLTRTGQLAKL 189


>gi|221061767|ref|XP_002262453.1| SAM dependent methyltransferase [Plasmodium knowlesi strain H]
 gi|193811603|emb|CAQ42331.1| SAM dependent methyltransferase, putative [Plasmodium knowlesi
           strain H]
          Length = 507

 Score =  215 bits (548), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 82/345 (23%), Positives = 154/345 (44%), Gaps = 72/345 (20%)

Query: 29  IALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMRDYKE-- 83
           ++L+     +  +DAT G GG++    K     S V+A+D+D  ++   ++ ++ Y +  
Sbjct: 179 VSLMQNTSPEYYIDATLGGGGHTLEILKSFPRTSRVVAIDKDIESIYYSKQKLQCYVDTN 238

Query: 84  QFSLFQATFSQLQDYVPDKGV------DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
           + ++    +  +   +   G+       G++ DLGVS+ Q+ CG RGFS+Q +G LDM +
Sbjct: 239 KLTMIHGDYRYIIHLLHRHGLPLFGRYSGILLDLGVSTHQLKCGRRGFSYQHNGLLDMSI 298

Query: 138 S-----------------------------------------CSGIS---ASDVVNQANV 153
                                                               +++N  + 
Sbjct: 299 DRYTDEEYDRMCRESIEREEGGSNEDYQYDQTNQIKRAKGESPQSEPKKGIGEILNTYSA 358

Query: 154 KDLTRILGILGEEKQASRIAHAIVKRRQS-APFQTTQDLSSLIQKTVYFSKNNRIHPATR 212
           + L  I+   G+EK+A +IA  IV+ R+S    +TT  L  ++  T   +        +R
Sbjct: 359 QQLRFIMHTYGQEKKAYKIAKKIVQWRKSSGTIRTTYQLRDIVLSTCKKNYKANQKVLSR 418

Query: 213 SFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAV 272
            FQ+ RI++N+E++ L + L S+ K L+A   L+V+S+HSLE + V+ F  SR       
Sbjct: 419 VFQSFRIYINDEMKALKEFLLSSYKLLRAKKRLVVISYHSLEYKCVEMFVHSR------- 471

Query: 273 RHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
                      +++ I    + P +E++  N+ +RSAK+    + 
Sbjct: 472 ---------KNLWKKINDVDITPNEEELKANKSARSAKMSVFEKI 507


>gi|21749636|dbj|BAC03631.1| unnamed protein product [Homo sapiens]
          Length = 273

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 75/189 (39%), Positives = 112/189 (59%), Gaps = 11/189 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H+PV++++V+  L+P  G++ LD TFG+GG++++  +  S+  + ALDRDP A +  +  
Sbjct: 72  HIPVMVDEVVHCLSPQKGQIFLDMTFGSGGHTKAILQKESDIVLYALDRDPTAYALAEHL 131

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              Y +Q       FSQ +  +   GV     DGV+ DLG SSMQ+D  +RGFS +K GP
Sbjct: 132 SELYPKQIRAMLGQFSQAEALLMKAGVQPGTFDGVLMDLGCSSMQLDTPERGFSLRKDGP 191

Query: 133 LDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           LD+RM         +A+DVVN  + + L  IL   GEEK A +IA AIV+ R   P   T
Sbjct: 192 LDVRMDGGRYPDMPTAADVVNALDQQALASILRTYGEEKHAKKIASAIVQARSIYPITRT 251

Query: 189 QDLSSLIQK 197
           Q L+S++ +
Sbjct: 252 QQLASIVAE 260


>gi|167932993|ref|ZP_02520080.1| S-adenosyl-methyltransferase MraW [candidate division TM7
           single-cell isolate TM7b]
          Length = 242

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 102/258 (39%), Positives = 138/258 (53%), Gaps = 26/258 (10%)

Query: 61  VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG--VDGVVFDLGVSSMQI 118
           +  +DRD  A++             +L  A F      +   G   D ++ DLGVSS Q+
Sbjct: 2   LFLVDRDENAIAE-LGRFSALGA--TLINADFVSAAKQLVSVGEKFDVIMVDLGVSSPQL 58

Query: 119 DCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEK--QASRIAHA 175
           D GDRGFSF   GPLDMRM      SA+D+VN    + L  IL   GEE+   A RIA  
Sbjct: 59  DNGDRGFSFMYDGPLDMRMDQRQKFSAADIVNSYPKQKLIEILVRYGEERLSFAKRIADE 118

Query: 176 IVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSA 235
           I KRR   PF  T +L+ +I + ++     +IHPATR+FQALRI VN E+ ++   L   
Sbjct: 119 IYKRR---PFTKTSELAKMIVE-IHRGGWQKIHPATRTFQALRIEVNQELAQIESLLPLL 174

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVV-V 294
            + L +GG + ++SFHSLEDRLVK+FF   SG               +  + + KK +  
Sbjct: 175 LQLLNSGGRVGIISFHSLEDRLVKRFFKDNSGLSF-----------ESELELLNKKPLDG 223

Query: 295 PTQEDVAFNRRSRSAKLR 312
            T +  A+N RSRSAKLR
Sbjct: 224 ATYD--AYNPRSRSAKLR 239


>gi|68163389|ref|NP_001020152.1| hypothetical protein LOC295985 [Rattus norvegicus]
 gi|60551447|gb|AAH91215.1| Similar to RIKEN cDNA 0610027B03 [Rattus norvegicus]
          Length = 286

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 79/194 (40%), Positives = 113/194 (58%), Gaps = 11/194 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H+PV++++V+  L P  G+V LD TFG+GG+S++  +   +  V ALDRDP A +  +  
Sbjct: 72  HIPVMVDEVVQCLTPQKGQVFLDMTFGSGGHSKAILQKEPDVTVYALDRDPVAFTLAERL 131

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKG-----VDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              Y  Q       FSQ +  +   G     VDGV+ DLG SSMQ+D  +RGFS +K GP
Sbjct: 132 SEMYPTQIHAMLGQFSQAETLLMKAGVQPGTVDGVLLDLGCSSMQLDAPERGFSLRKDGP 191

Query: 133 LDMRMS----CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           LDMRM         +A+DVVN  + + L  IL   GEEK A +IA AI++ R + P   T
Sbjct: 192 LDMRMDGDRYPDMPTAADVVNALDQQALASILRAYGEEKHAKKIASAIIQARSTYPISRT 251

Query: 189 QDLSSLIQKTVYFS 202
           Q L+S++  T++ S
Sbjct: 252 QQLASIVAGTLFKS 265


>gi|156095737|ref|XP_001613903.1| S-adenosyl-methyltransferase mraW [Plasmodium vivax SaI-1]
 gi|148802777|gb|EDL44176.1| S-adenosyl-methyltransferase mraW, putative [Plasmodium vivax]
          Length = 471

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 83/332 (25%), Positives = 149/332 (44%), Gaps = 66/332 (19%)

Query: 36  PGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDY--KEQFSLFQA 90
           P +  +DAT G GG++    K     S VIA+D+D  ++   Q+ ++ Y    + ++   
Sbjct: 156 PVEYFIDATLGGGGHTLEMLKKLAPTSKVIAIDKDIESIYYNQQKLQRYVDANKLTMIHG 215

Query: 91  TFSQLQDYVPDKGV------DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSG--- 141
            +  +   +   G+       G++ DLG S+ Q+ CG RGFS++ +G LDM M       
Sbjct: 216 DYRYIIHLLHRYGLPLFGSYSGILLDLGASTHQLRCGRRGFSYKHNGLLDMSMDRYTDEE 275

Query: 142 -----------------------------------ISASDVVNQANVKDLTRILGILGEE 166
                                                  +++N  + + L  I+   G+E
Sbjct: 276 YARMCREGAERGGSGSNGGFQVKQANRANPQTEPPKRIGEILNTYSPQQLRHIMHTYGQE 335

Query: 167 KQASRIAHAIVKRRQSA-PFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEI 225
           K+AS+IA  I + R+S     TT  L  ++  T   +        +R FQ+ RI+VN+E+
Sbjct: 336 KKASKIAKKIAQWRKSRGTITTTHQLRDIVLSTCKQNYKANQKVLSRVFQSFRIYVNDEM 395

Query: 226 EELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF 285
           + L + L S+ K L+A   L+V+S+HSLE + V++F  SR                  ++
Sbjct: 396 KALKEFLLSSYKLLRARKRLVVISYHSLEYQCVERFVHSR----------------KNLW 439

Query: 286 QSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           + I    + P++ ++  N+ +RSAK+    + 
Sbjct: 440 EKINDVDITPSEGELKANKSARSAKMSVFEKV 471


>gi|124806575|ref|XP_001350761.1| s-adenosyl-methyltransferase, putative [Plasmodium falciparum 3D7]
 gi|23496889|gb|AAN36441.1| s-adenosyl-methyltransferase, putative [Plasmodium falciparum 3D7]
          Length = 508

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 83/313 (26%), Positives = 140/313 (44%), Gaps = 58/313 (18%)

Query: 40  ILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQL 95
            +DAT G GG++           +I +D+D  A+   +  ++ +    +  L    +  +
Sbjct: 207 YIDATLGGGGHTLEILNKIPNCRIIGIDKDIEALYYNKIKLKRFINNNKLKLIHGDYGNI 266

Query: 96  QDYVPDKG------VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGIS------ 143
              +            G++ DLGVSS Q+ C DRGFS++ +G LDM M+    S      
Sbjct: 267 LHLLHLHSLPIFNYYSGILIDLGVSSHQLKCCDRGFSYKYNGILDMNMNKYTESQYLSKL 326

Query: 144 ------------------------ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179
                                     +++N  ++K L  I+   GEEK+A +IA  I++ 
Sbjct: 327 FRNDNEHINDINDIKKNPKNSYNKLHNILNTYSLKKLKFIIDTYGEEKKALKIAKKIIQW 386

Query: 180 R-QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           R ++    TT  L ++I  T   +  +     +R FQA RI++N E++ L Q L S+ K 
Sbjct: 387 RKENGMILTTFQLKNIILSTCKQNYKSNNKVLSRVFQAFRIYINQELKTLKQLLISSHKL 446

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQE 298
           LK G  LIV+++HSLE + V+ F      K   +                    V+P+ E
Sbjct: 447 LKTGKKLIVITYHSLEKKCVELFIEKNKQKWTKLHQN-----------------VMPSDE 489

Query: 299 DVAFNRRSRSAKL 311
           ++  N+ +RSAK+
Sbjct: 490 EIKLNKSARSAKM 502


>gi|218461400|ref|ZP_03501491.1| S-adenosyl-methyltransferase MraW [Rhizobium etli Kim 5]
          Length = 216

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 92/216 (42%), Positives = 122/216 (56%), Gaps = 2/216 (0%)

Query: 128 QKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEK-QASRIAHAIVKRRQSAPFQ 186
           QK+GPLDMR S +    S        +     L +    K +               PF+
Sbjct: 1   QKNGPLDMRKSAARHFGSRRCQTRQGRRSHPHLSVFWARKAKRRVSRMRSRSAVPKKPFE 60

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
           TT+DL+ LI+        ++IHPATR FQALRIFVN+E+ ELAQ L +AE+ALK GG L+
Sbjct: 61  TTRDLAGLIELVTPRKMKDKIHPATRVFQALRIFVNDELGELAQALFAAERALKPGGRLV 120

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
           VV+FHSLEDR+VKKFF+ R+GK    RH+  ++   A F  I K +V  ++ +   N R+
Sbjct: 121 VVTFHSLEDRIVKKFFSDRAGKATGSRHLPAAHERAATFTVIGKPMVSASEAEAEVNPRA 180

Query: 307 RSAKLRAGMRT-VERSIEDDSFVHLPRLPTLSQFRG 341
           RSAKLRAG+RT       D S    P L TL +  G
Sbjct: 181 RSAKLRAGLRTDAATEPADMSLFGFPNLATLGKLGG 216


>gi|167752871|ref|ZP_02424998.1| hypothetical protein ALIPUT_01133 [Alistipes putredinis DSM 17216]
 gi|167659940|gb|EDS04070.1| hypothetical protein ALIPUT_01133 [Alistipes putredinis DSM 17216]
          Length = 183

 Score =  204 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 76/185 (41%), Positives = 104/185 (56%), Gaps = 5/185 (2%)

Query: 135 MRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM+   G +A+D+VN  +   LTRILG  GE     ++A  IV+ R + P  TT DL +
Sbjct: 1   MRMNQRGGGTAADLVNTLDADALTRILGDWGEIDTPWKVAACIVRARTAQPILTTADLVA 60

Query: 194 LIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
            +       K +     T+ FQALRI VN E+E L   L  + K L+ GG L+V+S+HSL
Sbjct: 61  AVAPCTP--KKDESKFLTKLFQALRIEVNGEMEALKMALEQSLKVLRPGGRLVVISYHSL 118

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           EDRLVK F  S + +    +        P  F+ IT+K V P+ E++  N RSRSAKLRA
Sbjct: 119 EDRLVKNFLRSGNFEGRIEKDFFGKPETP--FEIITRKAVTPSSEELVRNPRSRSAKLRA 176

Query: 314 GMRTV 318
             + V
Sbjct: 177 AAKIV 181


>gi|213025088|ref|ZP_03339535.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 165

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 65/163 (39%), Positives = 93/163 (57%), Gaps = 11/163 (6%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++  Q
Sbjct: 6   KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAQ 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +FS+    FS L DYV ++     +DG++ DLGVSS Q+D  +RGFSF + G
Sbjct: 66  TI---NDPRFSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFMRDG 122

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIA 173
           PLDMRM  + G SA++ +  A   D+  +L   GEE+ A RIA
Sbjct: 123 PLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIA 165


>gi|72384693|gb|AAZ67638.1| S-adenosyl-methyltransferase putative [Haemophilus parasuis 29755]
          Length = 187

 Score =  202 bits (514), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 61/181 (33%), Positives = 94/181 (51%), Gaps = 2/181 (1%)

Query: 137 MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
           M  +     +VVNQ + + L RI    GEEK + +IA  I   R+  P +TT +L  +I+
Sbjct: 1   MDQTQSFWYEVVNQWSYEALVRIFFRYGEEKFSKQIARRIEAHREQQPIETTLELVDVIK 60

Query: 197 KTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           + +    +    HPA R FQA+RI VN+E+      +  A + +K GG + V++FHSLED
Sbjct: 61  EGIPAKARRKGGHPAKRVFQAIRIAVNDELSAFEDSVEQAIECVKVGGRISVITFHSLED 120

Query: 256 RLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
           RL K+ F          R   +   A+    + + +K +  T +D+  N R+RSAKLR  
Sbjct: 121 RLCKQIFQEFEKGPDVPRGLPVIPEAYTPKLKRVNRKPITATDDDLNENNRARSAKLRVA 180

Query: 315 M 315
            
Sbjct: 181 E 181


>gi|210610079|ref|ZP_03288258.1| hypothetical protein CLONEX_00444 [Clostridium nexile DSM 1787]
 gi|210152690|gb|EEA83696.1| hypothetical protein CLONEX_00444 [Clostridium nexile DSM 1787]
          Length = 211

 Score =  201 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 73/220 (33%), Positives = 113/220 (51%), Gaps = 21/220 (9%)

Query: 104 VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGI 162
            D ++ DLGVSSMQID  DRGF+++  G LD+R++   G SA++ +      +L  +L  
Sbjct: 5   FDFILADLGVSSMQIDNPDRGFTYKSEGSLDLRLNPEKGESAAERLKNVTEDELEGMLVE 64

Query: 163 LGEEKQASRIAHAIVKR-RQSAPFQTTQDLSSLIQKTVYF-----SKNNRIHPATRSFQA 216
             +E  A+ IA  ++K+ RQ     TT  L   I++ + F      K        R+FQA
Sbjct: 65  NSDEPYAAEIAQQVMKKLRQGEMIDTTTKLYETIEEALSFIPEKERKEAVKKSCQRTFQA 124

Query: 217 LRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI 276
           LRI VN+E E L   +     ALK+GG + +++FHS EDR+VKK F              
Sbjct: 125 LRIDVNSEFEVLYALMEKLPSALKSGGKVAILTFHSGEDRIVKKAFKEWKKAG------- 177

Query: 277 PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
                  V+  I   V+ P+ ++   N R++S K+R  ++
Sbjct: 178 -------VYSEIANDVIRPSAKECVRNSRAKSTKMRWAIK 210


>gi|325915801|ref|ZP_08178101.1| putative S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325537984|gb|EGD09680.1| putative S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 218

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 69/187 (36%), Positives = 101/187 (54%), Gaps = 6/187 (3%)

Query: 152 NVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPAT 211
             +D+  +L   GEE+Q+ RIA AIV RR   P   T  L+ LI   +    +++ HPAT
Sbjct: 19  PPRDIADVLWTYGEERQSRRIARAIVARRAEQPLLRTAQLADLIASVMPRG-DSKTHPAT 77

Query: 212 RSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMA 271
           RSFQA+RI++N E+++L  GL +A  ALK GG L V+SFHSLEDR+VK+F A  +    +
Sbjct: 78  RSFQAIRIYINRELDDLQAGLDAALDALKPGGRLAVISFHSLEDRIVKQFMARYAKAPPS 137

Query: 272 VRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR----TVERSIEDDSF 327
            R +  +       Q I+   +     ++  N R+RSA LR   +      E  +   + 
Sbjct: 138 NRRLPEAQPFVPTLQLIS-GAIKADDAELNINPRARSAVLRVAEKLGMGNGESGMGKGNS 196

Query: 328 VHLPRLP 334
              PR P
Sbjct: 197 AAAPRFP 203


>gi|42559483|sp|Q8KTR3|RSMH_TREPR RecName: Full=Ribosomal RNA small subunit methyltransferase H;
           AltName: Full=16S rRNA m(4)C1402 methyltransferase;
           AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase
           RsmH
 gi|21702588|gb|AAM75985.1|AF481102_21 putative protein YabC [Candidatus Tremblaya princeps]
          Length = 295

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 81/313 (25%), Positives = 131/313 (41%), Gaps = 35/313 (11%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQ 75
           +H  V++++V+  L      + +DAT+G GG+S +          VIALD D  ++    
Sbjct: 5   EHRSVMIQEVVDNLLTNTSGLYIDATYGTGGHSTALLGCLGPQGKVIALDCD-QSIRFDH 63

Query: 76  ETMRDYKEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
                   + +   A F +L  Y+      G DG+V DLG S+ Q+    RG S+   GP
Sbjct: 64  T----SDPRAAAGHANFRELSGYLRCAEIYGADGIVADLGPSATQVHDAQRGLSYLHPGP 119

Query: 133 LDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
           +DMR+  +  +  S  + +  +  L   L   G   +    A  I+   + A + TT D 
Sbjct: 120 IDMRVDPTLRVPLSGRLMRTGLGTLHSSLRCHGFSGRTKAAASRILHIVRKARYTTTLD- 178

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
              +        N   H A  +F+ALR   N+E + L   +R A   LK GG L++++F 
Sbjct: 179 ---VATAACGLHNQGKHMAADAFRALRSMANSEPQCLRSLVRHAPAVLKPGGRLLILTFD 235

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           S  +R+V+      S                     +  + V PTQ +V  N  +RS+ L
Sbjct: 236 SFGERMVRASIEHASC-------------------LVLMRTVAPTQREVDTNPGARSSLL 276

Query: 312 RAGMRTVERSIED 324
               RT       
Sbjct: 277 HVLRRTGNPRSAA 289


>gi|70953007|ref|XP_745633.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56526017|emb|CAH81938.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
          Length = 318

 Score =  200 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 89/340 (26%), Positives = 155/340 (45%), Gaps = 66/340 (19%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76
           DH P+LL            + ++DAT G GG++    K  + +  I++D+D  A+   + 
Sbjct: 4   DH-PILLH--------NQNEYMIDATLGGGGHTLEILKKFTKLKVISIDKDIEAIYYNKY 54

Query: 77  TMRDYKE--QFSLFQATFSQLQDYVPDKGV------DGVVFDLGVSSMQIDCGDRGFSFQ 128
            ++ Y +  +  L    +  +   +    +        ++ DLGVS+ Q+    RGFS++
Sbjct: 55  KLKSYIDTNRLKLIHGNYKDILFLLNYHSLPLFNSYSAILVDLGVSTHQLKSSKRGFSYK 114

Query: 129 KSGPLDMRMSC-------------------------------SGISASDVVNQANVKDLT 157
            +  LDM M+                                 G    +++N  N+K L 
Sbjct: 115 YNNILDMNMNKYTEKEYVENYINKELKQDNEIKELYMTSEIEDGKKIHNILNTYNLKKLK 174

Query: 158 RILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQAL 217
            I+   GEEK+A +IA  I++ R+      T  L ++I  T   +  +     +R FQA 
Sbjct: 175 YIIQKFGEEKKAFKIAKKIIEWRKQNKEIVTTLLKNIILSTCKNNYKSNNKVLSRVFQAF 234

Query: 218 RIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIP 277
           RI+VNNE+  L   L S+ K LK GG+LIV+S+HSLE++ +  F  +++           
Sbjct: 235 RIYVNNELLSLKNLLLSSHKILKQGGVLIVISYHSLENKYIDLFVKNKTQ---------- 284

Query: 278 SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
                 +++ I    +VPT +++  N+ SRSAK+ A  + 
Sbjct: 285 ------LWKQINTHPIVPTDQEIKLNKSSRSAKMFAFKKV 318


>gi|323445745|gb|EGB02206.1| hypothetical protein AURANDRAFT_69098 [Aureococcus anophagefferens]
          Length = 335

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 80/246 (32%), Positives = 121/246 (49%), Gaps = 19/246 (7%)

Query: 3   SKSCKTMSSAIHHTIGDHVPVLLEKVIALLNP--APGKVILDATFGAGGYSRSFCKMGS- 59
           + +C TM ++     G H P + E+ +  L     P  V +D TFG GG++R   +    
Sbjct: 98  ATTCGTMQAS-----GTHTPAMFEECVEALGVEWNPDGVYVDGTFGRGGHTRKILEKLGP 152

Query: 60  --NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQ 117
              +   D DP AV+ G E +R    +F +  A FS +   +    VDGV+ D+G+SS Q
Sbjct: 153 KGTLHGFDMDPEAVAVG-EQLRGEDPRFVIHHAPFSSMAAVLAGVAVDGVLLDIGISSPQ 211

Query: 118 IDCGDRGFSFQKSGPLDMRMSCSG--ISASDVVNQANVKDLTRILGILGEEK--QASRIA 173
           +D G RGF  +  GPLDMR         A   + +A+  +L   L   G E+   A RIA
Sbjct: 212 LD-GGRGFKPEVDGPLDMRFDVREGVEDAMGYLRRASRVELAAALEAYGGERPAAARRIA 270

Query: 174 HAIVKRRQSAPFQ--TTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQG 231
            A+   ++       TT+  + L+++     +   +HPA  +FQALRI VN E  EL +G
Sbjct: 271 DAVALAKKDGSLARMTTRPFADLVERA-KGKEYQAMHPAKMTFQALRIVVNREYLELERG 329

Query: 232 LRSAEK 237
           L  A +
Sbjct: 330 LAGALE 335


>gi|225166427|ref|ZP_03728086.1| S-adenosyl-methyltransferase MraW [Opitutaceae bacterium TAV2]
 gi|224799334|gb|EEG17902.1| S-adenosyl-methyltransferase MraW [Opitutaceae bacterium TAV2]
          Length = 192

 Score =  196 bits (498), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 69/190 (36%), Positives = 105/190 (55%), Gaps = 3/190 (1%)

Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
             P DMRM   +G+ AS  +  A    L R +   GEE+ A+R+  AI   R +     T
Sbjct: 2   DAPADMRMDPRTGVPASLWLETATDDMLLRAIRDYGEERHATRVVRAIKDARGTGTLSRT 61

Query: 189 QDLSSLIQKTVYFSKN--NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246
             L+ LI   +        +IHPATR+FQ +RI +N+E+  L + L +A   L++GG+L 
Sbjct: 62  ASLAELIANAIPARDRFSAKIHPATRAFQGIRIAINDELGALERALPAAFALLRSGGVLA 121

Query: 247 VVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRS 306
            +SFHSLEDR VK+ F    G+  +     P++      + +T+K V P+ +++A N R+
Sbjct: 122 AISFHSLEDRPVKQAFRRFCGQPESHDDHRPADLREKFAEPLTRKPVTPSDDELAANPRA 181

Query: 307 RSAKLRAGMR 316
           RSAKLRA  +
Sbjct: 182 RSAKLRAIRK 191


>gi|312867867|ref|ZP_07728072.1| S-adenosyl-methyltransferase MraW [Streptococcus parasanguinis
           F0405]
 gi|311096622|gb|EFQ54861.1| S-adenosyl-methyltransferase MraW [Streptococcus parasanguinis
           F0405]
          Length = 186

 Score =  196 bits (498), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 57/173 (32%), Positives = 90/173 (52%), Gaps = 14/173 (8%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALD 65
           MS   H     HV VLL + I +L+  P  + +DAT G  G+S           ++ A D
Sbjct: 1   MSKEFH-----HVTVLLHETIDMLDVKPDGIYVDATLGGAGHSEYLLTKLNESGHLYAFD 55

Query: 66  RDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDC 120
           +D  A+   +  +  + E+   +  +  F  L++ + D GV   DG+ +DLGVSS Q+D 
Sbjct: 56  QDQHAIENAKIRLAPFIEKGMVTFIKDNFRHLKERLNDLGVTEIDGICYDLGVSSPQLDE 115

Query: 121 GDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRI 172
            +RGFS++K  PLDMRM+    ++A +VVN  +  DL RI   +      S++
Sbjct: 116 RERGFSYKKDAPLDMRMNQEASLTAYEVVNSYDYHDLVRIFSNMERINFPSKL 168


>gi|145502845|ref|XP_001437400.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124404550|emb|CAK70003.1| unnamed protein product [Paramecium tetraurelia]
          Length = 277

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 68/275 (24%), Positives = 119/275 (43%), Gaps = 33/275 (12%)

Query: 41  LDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDY 98
           +D T G G +S+   +      ++ LD D   +    + +   ++ F      F + +  
Sbjct: 24  VDCTIGTGAHSQILLEHVKNLKILGLDIDERMIKNLPQNITAKQDNFI----NFYKHKTL 79

Query: 99  VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLT 157
              K  D +  DLG +  Q+     G S++K+  LDMR S S   +A+D++N  + ++L 
Sbjct: 80  SDTKNFDIIFADLGYNINQVYDESYGLSYKKNSLLDMRYSQSIQHTAADLLNNRSQQELR 139

Query: 158 RILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQAL 217
            I    G   +A+++A  I+  RQ   F+    +  ++ +              ++FQAL
Sbjct: 140 EIFYHYGNIHKANQLAKIIIDNRQKEKFERANQVVDILNELSM------GDQIMKTFQAL 193

Query: 218 RIFVNNEIEELAQGLRSAEKALKAGGLLI-VVSFHSLEDRLVKKFFASRSGKVMAVRHMI 276
           RI VN EI  L   L   +        LI +++FHSLE   V+KF               
Sbjct: 194 RIAVNQEINNLNLFLEKVQSQQIVDKQLILIITFHSLEAESVQKFIMKFK---------- 243

Query: 277 PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
                    +  + K + P+++++  N RSRSA L
Sbjct: 244 ---------KQFSMKTIKPSEDEIKENPRSRSALL 269


>gi|291546845|emb|CBL19953.1| Predicted S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [Ruminococcus sp. SR1/5]
          Length = 282

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 60/217 (27%), Positives = 110/217 (50%), Gaps = 9/217 (4%)

Query: 5   SCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNV 61
           + + + S  +   G H+ ++++++I  L   PG+V  DAT G GG++++  +      ++
Sbjct: 53  TIEHVISKGNTPAGMHISIMVKEIIDFLEIRPGQVGFDATLGYGGHTKAMLECLRGQGHM 112

Query: 62  IALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDK-GVDGVVFDLGVSSMQ 117
            A D DP   +  ++ + +     +  ++    F  + +   +  G D ++ DLGVSSMQ
Sbjct: 113 YATDVDPEESAKTRKRLAEQGFGEDILTIKLQNFCTIDEIAEEVGGFDFILADLGVSSMQ 172

Query: 118 IDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAI 176
           ID   RGFSF+  GPLD+R++  +GISA+  ++  + ++L  +L    +E     IA AI
Sbjct: 173 IDNPKRGFSFKVDGPLDLRLNQETGISAAQRLDTISREELAGMLDENSDEPYCEEIAKAI 232

Query: 177 VKR-RQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATR 212
               R+     TT  L  +I+KT+ F          +
Sbjct: 233 TDEIRRGNHIDTTTKLREVIEKTLSFLPEKERKDTVK 269


>gi|210610097|ref|ZP_03288259.1| hypothetical protein CLONEX_00445 [Clostridium nexile DSM 1787]
 gi|210152609|gb|EEA83615.1| hypothetical protein CLONEX_00445 [Clostridium nexile DSM 1787]
          Length = 265

 Score =  193 bits (490), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 67/218 (30%), Positives = 109/218 (50%), Gaps = 14/218 (6%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
             G H+ + +++++      PG+  LDAT G GG++    K      ++ ALD DP    
Sbjct: 48  PAGMHISICVKEILDFFQIEPGQKGLDATLGYGGHTLEMLKCLKGEGHLYALDIDPIESV 107

Query: 73  CGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQ 128
             +E +++     E  S+    F+ +   V + G  D ++ DLGVSSMQID  DRGF+++
Sbjct: 108 KTKERLKNLGYGEEMLSIRHLNFADIDQVVEEAGPFDFILADLGVSSMQIDNPDRGFTYK 167

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR-RQSAPFQ 186
             G LD+R++   G SA++ +      +L  +L    +E  A+ IA  ++K+ RQ     
Sbjct: 168 SEGSLDLRLNPEKGESAAERLKNVTEDELEGMLVENSDEPYAAEIAQQVMKKLRQGEMID 227

Query: 187 TTQDLSSLIQKTVYF-----SKNNRIHPATRSFQALRI 219
           TT  L   I++ + F      K        R+FQALRI
Sbjct: 228 TTTKLYETIEEALSFIPEKERKEAVKKSCQRTFQALRI 265


>gi|198431221|ref|XP_002121456.1| PREDICTED: similar to methyltransferase 5 domain containing 1
           [Ciona intestinalis]
          Length = 343

 Score =  192 bits (488), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 68/200 (34%), Positives = 108/200 (54%), Gaps = 14/200 (7%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRD 67
           S         H+PV+ E++++ LN   G VI+D TFGAGG+++   +      VIALDRD
Sbjct: 26  SRPNSKEAALHIPVMAEELVSGLNIKRGDVIIDMTFGAGGHTKFIMENYKHCKVIALDRD 85

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGD 122
             A    Q+  + +K +       FS+L   + + G+     +  + D G SSMQ D  +
Sbjct: 86  EKAFEIAQDLSKKFKGRIIPLLGKFSELDKLLSENGIVENSLNAALLDAGCSSMQFDQPE 145

Query: 123 RGFSFQKSGPLDMRMSCSG----ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178
           RGFS  + GPLDMRM  +     I+A+DVVN  + ++LT I+   G+E+ A  I+ +I++
Sbjct: 146 RGFSLVRDGPLDMRMDGNRSEGQITAADVVNNLDEEELTEIIYKYGDERNARNISSSIIE 205

Query: 179 RRQSAPFQTTQDLSSLIQKT 198
            R   P  TT +L+ ++   
Sbjct: 206 NR---PISTTLELARVVSMA 222


>gi|314923253|gb|EFS87084.1| MraW methylase family protein [Propionibacterium acnes HL001PA1]
 gi|314967020|gb|EFT11119.1| MraW methylase family protein [Propionibacterium acnes HL082PA2]
 gi|314980976|gb|EFT25070.1| MraW methylase family protein [Propionibacterium acnes HL110PA3]
 gi|315091635|gb|EFT63611.1| MraW methylase family protein [Propionibacterium acnes HL110PA4]
 gi|315093059|gb|EFT65035.1| MraW methylase family protein [Propionibacterium acnes HL060PA1]
 gi|315103167|gb|EFT75143.1| MraW methylase family protein [Propionibacterium acnes HL050PA2]
 gi|327327840|gb|EGE69616.1| MraW methylase family protein [Propionibacterium acnes HL103PA1]
          Length = 201

 Score =  192 bits (488), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 71/187 (37%), Positives = 98/187 (52%), Gaps = 3/187 (1%)

Query: 135 MRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSS 193
           MRM  S G +A+ ++N+++  DL R+L   GEEK A RI  AIV  R   P +T+  L  
Sbjct: 1   MRMDQSSGRTAAQILNESDPGDLVRMLREYGEEKFADRIVRAIVTERDRQPIETSGRLVE 60

Query: 194 LIQKTVYF--SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
           +I + +     +    HPA R+FQALRI VN E+E L   L  A   L  GG + V+S+H
Sbjct: 61  IITEAIPATVRRKRHSHPAKRTFQALRIAVNREMETLPAVLPRALNRLDVGGRIAVLSYH 120

Query: 252 SLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKL 311
           SLEDR VK+ F             +   +  A F  +T+    P  ++VA N RS SA+L
Sbjct: 121 SLEDRPVKEAFRDACADTAPTGLPMVPESMAAKFNPVTRGAERPDADEVATNPRSASARL 180

Query: 312 RAGMRTV 318
           R   R  
Sbjct: 181 RVIGRVR 187


>gi|167947445|ref|ZP_02534519.1| S-adenosylmethyl transferase MraW [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 172

 Score =  191 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 60/162 (37%), Positives = 87/162 (53%), Gaps = 1/162 (0%)

Query: 157 TRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQA 216
             +L   G+E+ A RIA AIV  RQ  P  TT  L+ ++       +  + HPATRSFQA
Sbjct: 12  ADVLKRYGDERHARRIARAIVAARQVEPILTTGRLAEIVSAANPAWEKGK-HPATRSFQA 70

Query: 217 LRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI 276
           +RIF+N E+++L Q L    + L+ GG L V+SFHSLEDR+VK+F   ++        + 
Sbjct: 71  IRIFINRELDDLQQFLGQVLEVLRPGGRLAVISFHSLEDRIVKRFMRDQAKGDRFPAGVP 130

Query: 277 PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318
            + A       +  K + P  ++   N R+RSA LR   R  
Sbjct: 131 VTQAQLQPRLKLLGKAIRPGADETESNPRARSAVLRVAERLA 172


>gi|328462958|gb|EGF34770.1| S-adenosyl-methyltransferase MraW [Lactobacillus rhamnosus MTCC
           5462]
          Length = 231

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 60/179 (33%), Positives = 82/179 (45%), Gaps = 9/179 (5%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSC 73
           T   H  VLL++  A L        +DAT G GG++R          +IA D+D  A++ 
Sbjct: 48  TEFKHETVLLKEATAALAVKSDGTYVDATLGRGGHTRQILNQLTNGRLIAFDQDEAAIAA 107

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKS 130
                     Q +L    F  L   + D     VDGV++DLGVSS Q D   RGFS++  
Sbjct: 108 VTRQFGTLPPQLTLVHRNFRDLGAALADLDIRQVDGVLYDLGVSSPQFDDSKRGFSYRFD 167

Query: 131 GPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIA---HAIVKRRQSAPF 185
            PLDMRM     + A   VN+    +L RI    GEE   SR+      +V +R+  P 
Sbjct: 168 APLDMRMDQRQTLDAKTXVNEWPYAELVRIFSRYGEEHFLSRLRVELSKLVPKRRLQPL 226


>gi|323222501|gb|EGA06871.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
          Length = 149

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 57/147 (38%), Positives = 83/147 (56%), Gaps = 11/147 (7%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQ 75
            H  VLL++ +  LN  P  + +D TFG GG+SR           ++A+DRDP A++  Q
Sbjct: 6   KHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAQ 65

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
                   +FS+    FS L DYV ++     +DG++ DLGVSS Q+D  +RGFSF + G
Sbjct: 66  TI---NDPRFSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFMRDG 122

Query: 132 PLDMRMSCS-GISASDVVNQANVKDLT 157
           PLDMRM  + G SA++ +  A   D+ 
Sbjct: 123 PLDMRMDPTRGQSAAEWLQTAEEADIA 149


>gi|266624101|ref|ZP_06117036.1| MraW methylase family protein [Clostridium hathewayi DSM 13479]
 gi|288864070|gb|EFC96368.1| MraW methylase family protein [Clostridium hathewayi DSM 13479]
          Length = 150

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 51/150 (34%), Positives = 84/150 (56%), Gaps = 2/150 (1%)

Query: 170 SRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEEL 228
             IA  IV+ R++   +TT +L+ +I++ V    +    HP+ ++FQA+RI +N E+E L
Sbjct: 1   KNIAKHIVRARETKRIETTGELTEIIKEAVPAKVRAVGGHPSKKTFQAIRIELNQELEVL 60

Query: 229 AQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQS 287
              + +    L  GG L V++FHSLEDR+VK  F +            +      +  + 
Sbjct: 61  NNSIDTMIDLLNPGGRLAVITFHSLEDRIVKIRFRNNENPCTCPPDFPVCVCGKVSKGRV 120

Query: 288 ITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
           IT+K VVP++E++  N+RS+S+KLR   R 
Sbjct: 121 ITRKPVVPSEEEINGNKRSKSSKLRVFERI 150


>gi|82595835|ref|XP_726012.1| s-adenosyl-methyltransferase Mraw [Plasmodium yoelii yoelii str.
           17XNL]
 gi|23481241|gb|EAA17577.1| s-adenosyl-methyltransferase mraw-related [Plasmodium yoelii
           yoelii]
          Length = 493

 Score =  190 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 86/336 (25%), Positives = 151/336 (44%), Gaps = 69/336 (20%)

Query: 35  APGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQETMRDY--KEQFSLFQA 90
              + ++DAT G GG++    K   N+  I++D+D  A+   +  +R Y  K +  +   
Sbjct: 174 KEDEYLIDATLGGGGHTLEMLKKFKNLKVISIDKDIEAIYYNKYKLRSYINKNRLKIIHG 233

Query: 91  TFSQLQDYVPDKGV------DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC----- 139
            +  +   +    +        ++ DLGVS+ QI    RGFS++ +  LDM M+      
Sbjct: 234 NYKDILFLLNYYSLPIFNTYSAILVDLGVSTHQIKSSKRGFSYKYNDILDMNMNKYTEKE 293

Query: 140 -------------------------------------SGISASDVVNQANVKDLTRILGI 162
                                                 G    +++N  N+K L  I+  
Sbjct: 294 YIENHINKELKQDTKIKELYMINESHDDDKNIYHKNYDGKKIHNILNTYNLKKLKYIIQK 353

Query: 163 LGEEKQASRIAHAIVKRRQS-APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFV 221
            GEEK+A +IA  I++ R+      TT DL ++I  T   +  +     +R FQ+ RI++
Sbjct: 354 FGEEKKAYKIAKKIIEWRKKNGEIITTFDLKNIILSTCKNNYKSNNKVLSRVFQSFRIYI 413

Query: 222 NNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAH 281
           NNE+  L   L S+ K LK GG+LI++S+HSLE++ +  F  +++               
Sbjct: 414 NNELLSLKNLLLSSHKILKQGGVLILISYHSLENKYIDLFVKNKTK-------------- 459

Query: 282 PAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
             ++  I  + ++PT ++V  N+ SRSAK+ A  + 
Sbjct: 460 --LWNQINIQPIIPTNQEVKLNKSSRSAKMFAFKKI 493


>gi|300175849|emb|CBK21845.2| unnamed protein product [Blastocystis hominis]
          Length = 221

 Score =  186 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 68/212 (32%), Positives = 106/212 (50%), Gaps = 12/212 (5%)

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKG---------VDGVVFDLGVSSMQIDCGDRGFSF 127
            +  Y+ + S+   TF+    Y+              +G + DLG +S+ +D  DRGFSF
Sbjct: 8   RLAPYQSRVSIITDTFANTYKYLNQMNDSNASFATKANGTLLDLGFNSVHVDEADRGFSF 67

Query: 128 QKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQ--ASRIAHAIVKRRQSAP 184
           QK GPLDMR   S GI+A+D+VNQ +   LT I      E       +A  I +RR+   
Sbjct: 68  QKDGPLDMRYDPSQGITAADLVNQLDRDSLTAIFAEYSGETYRTCRHVASVICRRREKQQ 127

Query: 185 FQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           F  T D ++ + K +   K +R  P T  FQALRI VNNE + L + + +    +  GG+
Sbjct: 128 FTNTIDFATCVNKALESGKRSRKTPCTGIFQALRISVNNEYDHLNKFMETLPAMMAPGGI 187

Query: 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMI 276
            + + F SLE ++VK++         + +  +
Sbjct: 188 SVFLCFQSLEVQIVKRWVRQYFSDCKSDKPPV 219


>gi|294670599|ref|ZP_06735478.1| hypothetical protein NEIELOOT_02324 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307724|gb|EFE48967.1| hypothetical protein NEIELOOT_02324 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 180

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 64/178 (35%), Positives = 97/178 (54%), Gaps = 4/178 (2%)

Query: 149 NQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIH 208
             A+  ++  ++   GEE+ + +IA AIV +R      TT  L+ +  + V   +  +  
Sbjct: 1   MSADEDEIHEVIKNYGEERFSRQIARAIVAQRAVGSIDTTGKLAQIAAQNVRTRERGQ-D 59

Query: 209 PATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGK 268
           PATR+FQA+RIF+N E+EE+A  L  A   LK+GG L V++FHSLEDR+VK+F    S  
Sbjct: 60  PATRTFQAIRIFINRELEEIAAVLPQAAGRLKSGGRLAVIAFHSLEDRIVKQFIKRYSTH 119

Query: 269 VMAVRHMI--PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERSIED 324
               +      ++      +SI  K +  + ++VA N R+RSA LR   RT     ED
Sbjct: 120 APLPKWAAVREADLPQPPLKSI-GKAIKASADEVAANPRARSAVLRIAERTDGIFSED 176


>gi|266624100|ref|ZP_06117035.1| S-adenosyl-methyltransferase MraW [Clostridium hathewayi DSM 13479]
 gi|288864078|gb|EFC96376.1| S-adenosyl-methyltransferase MraW [Clostridium hathewayi DSM 13479]
          Length = 167

 Score =  183 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 58/166 (34%), Positives = 98/166 (59%), Gaps = 8/166 (4%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSC 73
           + +H  VLL + I  LN  P  + +D T G GG++   C+       +I +D+D  A++ 
Sbjct: 2   MFEHKSVLLYEAIDSLNVKPDGIYVDGTLGGGGHALEVCRRLGEYGRLIGIDQDADAIAA 61

Query: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGDRGFSFQ-K 129
             E +RDY+++ ++ ++ + ++Q  + D G+   DG+  DLGVSS Q+D  +RGF+++ +
Sbjct: 62  ASERLRDYEDRVTIVRSNYEEIQSVLKDLGIEKADGIYLDLGVSSYQLDTPERGFTYREE 121

Query: 130 SGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEKQASRIAH 174
             PLDMRM   +  +A+D+VN  +  DL RI+   GE+K A  IA 
Sbjct: 122 DAPLDMRMDQRNTRTAADIVNTYSEFDLYRIIRDYGEDKFAKNIAK 167


>gi|123225262|emb|CAM17437.1| methyltransferase 5 domain containing 1 [Mus musculus]
 gi|123231530|emb|CAM24680.1| methyltransferase 5 domain containing 1 [Mus musculus]
          Length = 230

 Score =  182 bits (462), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 70/177 (39%), Positives = 98/177 (55%), Gaps = 18/177 (10%)

Query: 2   ESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN- 60
           E K  + M+         H+PV++++V+  L P  G+V LD TFG+GG++R+  +   + 
Sbjct: 61  EEKELEAMAKL-------HIPVMVDQVVHCLAPQKGQVFLDMTFGSGGHTRAILQKEPDV 113

Query: 61  -VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVS 114
            V ALDRDP A +  ++  R Y  Q       FSQ +  +   GV     DG++ DLG S
Sbjct: 114 MVYALDRDPVAYAIAEQLSRLYPTQIQALLGQFSQAEALLMKAGVQPGTIDGILMDLGCS 173

Query: 115 SMQIDCGDRGFSFQKSGPLDMRMS----CSGISASDVVNQANVKDLTRILGILGEEK 167
           SMQ+D  +RGFS +K GPLDMRM         +ASDVVN  + + L  IL   GEEK
Sbjct: 174 SMQLDAPERGFSLRKDGPLDMRMDGDRYPDTPTASDVVNALDQQALASILRAYGEEK 230


>gi|119599130|gb|EAW78724.1| hCG2022166, isoform CRA_b [Homo sapiens]
          Length = 333

 Score =  181 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 84/309 (27%), Positives = 132/309 (42%), Gaps = 60/309 (19%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H+PV++++V+  L+P  G++ LD TFG+GG++++  +  S+  + ALDRDP A +  +  
Sbjct: 72  HIPVMVDEVVHCLSPQKGQIFLDMTFGSGGHTKAILQKESDIVLYALDRDPTAYALAEHL 131

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              Y +Q       FSQ +  +   GV     DGV+ DLG SSMQ+D  +RG S +K GP
Sbjct: 132 SELYPKQIRAMLGQFSQAEALLMKAGVQPGTFDGVLMDLGCSSMQLDTPERGSSLRKDGP 191

Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           LD+RM    +  S  +     + L   +     E                   +T Q   
Sbjct: 192 LDIRMD-DLLQQSTYIATKTFQALRIFVNNELNELYTG--------------LKTAQKFL 236

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252
            L  + V             SF +L      E   + + L                   S
Sbjct: 237 RLGGRLV-----------ALSFHSL------EDRIVKRFLLGI----------------S 263

Query: 253 LEDRL---VKKFFASRS--GKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSR 307
           + +R    V++     S  G        +     P +++ I KKV+ P  +DV  N R R
Sbjct: 264 MTERFNLSVRQQVMKTSQLGSDHENTEEVSMRRAPLMWELIHKKVLSPQDQDVQDNPRGR 323

Query: 308 SAKLRAGMR 316
           SAKLRA ++
Sbjct: 324 SAKLRAAIK 332


>gi|301102540|ref|XP_002900357.1| S-adenosyl-L-methionine-dependent methyltransferase mraW-like
           protein [Phytophthora infestans T30-4]
 gi|262102098|gb|EEY60150.1| S-adenosyl-L-methionine-dependent methyltransferase mraW-like
           protein [Phytophthora infestans T30-4]
          Length = 221

 Score =  176 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 63/199 (31%), Positives = 100/199 (50%), Gaps = 16/199 (8%)

Query: 20  HVPVLLEKVIALLNPAPGKV-----ILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVS 72
           H+PVLL++ +  L+     V      +D T G GG+SR+  +  S   ++ +D DP  +S
Sbjct: 19  HIPVLLQETVTALSRNVSDVSKPLYFVDGTAGFGGHSRAILQRFSDARLLCIDCDPEVLS 78

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPD----KGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
             Q  + ++  + S    +++ L  ++        VDG++ DLG +S   D   RGFS  
Sbjct: 79  IAQANLSEFHGRVSFQNGSYADLAKHLEAARFPDEVDGILVDLGANSFHFDAARRGFSVL 138

Query: 129 KSGPLDMRMSC---SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS--A 183
             GPLDMR +    S  +A+D VN  +   LT+I    GEE+ A   A AIV+ R+    
Sbjct: 139 NDGPLDMRFNQLDASLSTAADAVNSLSEVQLTKIFRDYGEERLAKEFAKAIVREREEKGK 198

Query: 184 PFQTTQDLSSLIQKTVYFS 202
            F+TT+DL   I++     
Sbjct: 199 VFETTKDLRECIERIANMR 217


>gi|225708994|gb|ACO10343.1| S-adenosyl-L-methionine-dependent methyltransferase METT5D1
           [Caligus rogercresseyi]
          Length = 366

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 90/317 (28%), Positives = 144/317 (45%), Gaps = 36/317 (11%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVSCGQET 77
           H PV  ++V+ +L P   ++ LD T+G GG++      +  + VIA DRD  ++      
Sbjct: 33  HTPVFFQEVLDILRPKKDQIFLDTTYGTGGHTNLILDHQPHARVIASDRDVSSIDLAMRM 92

Query: 78  MRDYK-EQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSG 131
            + Y     +   A FS+L  ++   G+     DGV+ D G+S +Q   G+RGFS +  G
Sbjct: 93  GQKYPSGSLNAIVARFSELPRHLIRLGLRENTCDGVIIDCGISDIQW-GGERGFSLK--G 149

Query: 132 PLDMRMSCSG----ISASDVVNQANVKDLTRILGILGEEK-QASRIAHAIVKRRQS-APF 185
           PLD+RM         +AS+V+       L R L   G+ K  A  +A+AIV+ R     F
Sbjct: 150 PLDLRMDPERYPETPTASEVLQSIRELPLLRPLKNYGKLKTNAKLVANAIVESRYMFNRF 209

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPAT-----------------RSFQALRIFVNNEIEEL 228
            T ++L  ++   V FS+  R    T                 R+  ALR+FVN+EI +L
Sbjct: 210 TTAEELYEVLLDAVKFSEVRRSLFLTTEEASSWEKAFTESLLHRTLTALRMFVNDEINQL 269

Query: 229 AQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI 288
             G+R A   LK GGLL+VV     E+  ++K         +      P       ++ +
Sbjct: 270 EYGVRIASHYLKPGGLLLVVVRGEAEEIALRKTLTEIDFDPILSND--PEILRTLPWKLV 327

Query: 289 TKKVVVPTQEDVAFNRR 305
            +     ++ D   + R
Sbjct: 328 GQIPYRLSKADQMLHPR 344


>gi|289426915|ref|ZP_06428641.1| MraW methylase family protein [Propionibacterium acnes J165]
 gi|289160004|gb|EFD08182.1| MraW methylase family protein [Propionibacterium acnes J165]
          Length = 178

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 62/163 (38%), Positives = 82/163 (50%), Gaps = 2/163 (1%)

Query: 158 RILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYF--SKNNRIHPATRSFQ 215
           R+L   GEEK A RI  AIV  R   P +T+  L  +I + +     +    HPA R+FQ
Sbjct: 2   RMLREYGEEKFADRIVRAIVTERDRQPIETSGRLVEIITEAIPATVRRKRHSHPAKRTFQ 61

Query: 216 ALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHM 275
           ALRI VN E+E L   L  A   L  GG + V+S+HSLEDR VK+ F             
Sbjct: 62  ALRIAVNREMETLPAVLPRALDRLDVGGRIAVLSYHSLEDRPVKEAFRDACADTAPAGLP 121

Query: 276 IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318
           +   +  A F  +T+    P  ++VA N RS SA+LR   R  
Sbjct: 122 MVPESMAAKFNPVTRGAERPDADEVATNPRSASARLRVIERVR 164


>gi|157869826|ref|XP_001683464.1| S-adenosyl-methyltransferase mraW-like protein [Leishmania major]
 gi|68126529|emb|CAJ04793.1| S-adenosyl-methyltransferase mraW-like protein [Leishmania major
           strain Friedlin]
          Length = 489

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 70/296 (23%), Positives = 126/296 (42%), Gaps = 40/296 (13%)

Query: 40  ILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQL 95
           +LD TFG+G ++    + G   + V+A+D D  A    +E + ++  ++F  +    S+ 
Sbjct: 144 VLDCTFGSGFHTGVVLENGRPYTRVVAMDCDVEATVSAREIVDEFGADRFRFYARPMSEA 203

Query: 96  QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ--KSGPLDMRMSCS-GISASDVVNQAN 152
           +    ++  D V+ D G SS Q++  +RGF         LDMR   + G+ A + +N   
Sbjct: 204 KAMFGERSFDAVMIDPGPSSTQLENPERGFLLNDESDHALDMRYGPTHGLGALEYLNTVP 263

Query: 153 VKDLTRIL--GILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVY---------F 201
              L+  L    L   +Q+ ++A AI +RR   PF   Q +   +++             
Sbjct: 264 QHALSGALASYELLTPQQSMKLARAIRQRR---PFDGAQRVLEAVEEAGNELPEEGWGTQ 320

Query: 202 SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKF 261
               +   +     +LR  VN+E  EL++ L++A   L+  G L+V S    E++L+   
Sbjct: 321 GSRRKTSMSWNFMTSLRCIVNHERHELSEALQNALLLLRTDGRLVVFSRLPWEEKLISTT 380

Query: 262 FASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
            +     +++    IP                    EDV  +  SR  K+    RT
Sbjct: 381 ISQHPHALLSYSEAIPI-------------------EDVQEHGHSRHTKMWIVTRT 417


>gi|322491999|emb|CBZ27273.1| S-adenosyl-methyltransferase mraW-like protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 489

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 73/314 (23%), Positives = 130/314 (41%), Gaps = 46/314 (14%)

Query: 28  VIALLNPAPGKV------ILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETM 78
            +  L P   +       +LD TFG+G ++    + G   + V+A+D D  A    +E +
Sbjct: 126 ALDALVPLSKQKRLVSYDVLDCTFGSGFHTGVVLENGRPYTRVVAMDCDLEATVSAREIV 185

Query: 79  RDYK-EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF--QKSGPLDM 135
            ++  ++F  F    S+ +    ++  D V+ D G S  Q++  +RGF    +    LDM
Sbjct: 186 DEFGADRFRFFARPMSEAKAMFGERSFDAVMIDPGPSLTQLENPERGFLLDDESDHALDM 245

Query: 136 RMSCS-GISASDVVNQANVKDLTRIL--GILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           R   + G+ A + +N      L+  L    L   +Q+ ++A AI +RR   PF   Q + 
Sbjct: 246 RYGPTHGLGALEYLNTVPQHALSSALASYELLTPQQSMKLARAIRQRR---PFDGAQRVL 302

Query: 193 SLIQKTVY---------FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243
             +++                 +   +     +LR  VN+E  EL++ L++A   L+  G
Sbjct: 303 EAVEEAGNELPEEGWGTQGSRRKTSMSWNFMTSLRCIVNHERHELSEALQNALLLLRTDG 362

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            L+V S    E+RL+    +     +++    IP                    EDV  +
Sbjct: 363 RLVVFSRLPWEERLISTTVSQHPHALLSYSEAIPI-------------------EDVQEH 403

Query: 304 RRSRSAKLRAGMRT 317
             SR  K+    RT
Sbjct: 404 GHSRHTKMWIVTRT 417


>gi|323219910|gb|EGA04388.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
          Length = 159

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 62/160 (38%), Positives = 96/160 (60%), Gaps = 8/160 (5%)

Query: 163 LGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVN 222
            GEE+ A RIA AIV+R +  P   T++L+ ++       K+   HPATR+FQA+RI+VN
Sbjct: 1   FGEERFAKRIARAIVERNREQPMTRTKELAEVVAAATPV-KDKFKHPATRTFQAVRIWVN 59

Query: 223 NEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHP 282
           +E+EE+ Q L+S+   L  GG L ++SFHSLEDR+VK+F   +S        +  + A  
Sbjct: 60  SELEEIEQALKSSLSVLAPGGRLSIISFHSLEDRIVKRFMREQSRGPQIPAGLPMTEAQL 119

Query: 283 AV-----FQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
                   +++ K  ++P +++VA N R+RS+ LR   RT
Sbjct: 120 KKLGGRELRALGK--LMPGEKEVAENPRARSSVLRIAERT 157


>gi|146087428|ref|XP_001465817.1| S-adenosyl-methyltransferase mraW-like protein [Leishmania infantum
           JPCM5]
 gi|134069917|emb|CAM68246.1| S-adenosyl-methyltransferase mraW-like protein [Leishmania infantum
           JPCM5]
          Length = 489

 Score =  172 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 69/296 (23%), Positives = 126/296 (42%), Gaps = 40/296 (13%)

Query: 40  ILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQL 95
           +LD TFG+G ++    + G   + V+A+D D  A    +E + ++  ++F  +    S+ 
Sbjct: 144 VLDCTFGSGFHTGVVLENGRPYTRVVAMDCDVEATVSAREIVDEFGADRFRFYARPMSEA 203

Query: 96  QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF--QKSGPLDMRMSCS-GISASDVVNQAN 152
           +    ++  D V+ D G S  Q++  +RGF    +    LDMR   + G+ A + +N   
Sbjct: 204 KAMFGERSFDAVMIDPGPSLTQLENPERGFLLDDESDHALDMRYGPTHGLGALEYLNTVP 263

Query: 153 VKDLTRIL--GILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSK------- 203
              L+  L    L   +Q+ ++A AI +RR   PF   Q +   +++             
Sbjct: 264 QHALSGALASYELLTPQQSMKLARAIRQRR---PFDGAQRVLEAVEEAGNELPEEGWGTQ 320

Query: 204 --NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKF 261
               +   +     +LR  VN+E  EL++ L++A   L+  G L+V S    E++L+   
Sbjct: 321 DSRRKTSMSWNFMTSLRCIVNHERHELSEALQNALLLLRTDGRLVVFSRLPWEEKLISTT 380

Query: 262 FASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
            +     +++    IP                    EDV  +  SR  K+    RT
Sbjct: 381 ISQHPHALLSYSEAIPI-------------------EDVQDHGHSRHTKMWIATRT 417


>gi|322499261|emb|CBZ34334.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 489

 Score =  172 bits (437), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 69/296 (23%), Positives = 126/296 (42%), Gaps = 40/296 (13%)

Query: 40  ILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQL 95
           +LD TFG+G ++    + G   + V+A+D D  A    +E + ++  ++F  +    S+ 
Sbjct: 144 VLDCTFGSGFHTGVVLENGRPYTRVVAMDCDVEATVSAREIVDEFGADRFRFYARPMSEA 203

Query: 96  QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF--QKSGPLDMRMSCS-GISASDVVNQAN 152
           +    ++  D V+ D G S  Q++  +RGF    +    LDMR   + G+ A + +N   
Sbjct: 204 KAMFGERSFDAVMIDPGPSLTQLENPERGFLLDDESDHALDMRYGPTHGLGALEYLNTVP 263

Query: 153 VKDLTRIL--GILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSK------- 203
              L+  L    L   +Q+ ++A AI +RR   PF   Q +   +++             
Sbjct: 264 QHALSGALASYELLTPQQSMKLARAIRQRR---PFDGAQRVLEAVEEAGNELPEEGWGTQ 320

Query: 204 --NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKF 261
               +   +     +LR  VN+E  EL++ L++A   L+  G L+V S    E++L+   
Sbjct: 321 DSRRKTSMSWNFMTSLRCIVNHERHELSEALQNALLLLRTDGRLVVFSRLPWEEKLISTT 380

Query: 262 FASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
            +     +++    IP                    EDV  +  SR  K+    RT
Sbjct: 381 ISQHPHALLSYSEAIPI-------------------EDVQDHGHSRHTKMWIATRT 417


>gi|13924472|gb|AAK49020.1|AF195898_1 hypothetical protein [Synechococcus sp. PCC 7002]
          Length = 136

 Score =  170 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 48/133 (36%), Positives = 76/133 (57%), Gaps = 5/133 (3%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCGQE 76
            H+ VL E+++A L   P    LD T G GG++    +   +V    +DRD  A++   E
Sbjct: 6   KHISVLKEELVAGLGVKPEGHYLDVTLGGGGHTELILQQYPDVRVTGVDRDSQAIAAASE 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
            ++ + ++F   ++ F + Q     +  DG++ DLGVSS+Q D GDRGFSF+   PLDMR
Sbjct: 66  RLKSFGDRFRAVRSNFGEYQP--QGEKFDGIIADLGVSSVQFDQGDRGFSFRFDAPLDMR 123

Query: 137 MSCSG-ISASDVV 148
           M     ++A+D+V
Sbjct: 124 MDQQQTLTAADIV 136


>gi|317473098|ref|ZP_07932397.1| MraW methylase [Anaerostipes sp. 3_2_56FAA]
 gi|316899436|gb|EFV21451.1| MraW methylase [Anaerostipes sp. 3_2_56FAA]
          Length = 260

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 54/176 (30%), Positives = 93/176 (52%), Gaps = 8/176 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
             G H+ + +++++  L   PG+  LDAT G GG+++   K      ++ ALD D   + 
Sbjct: 74  PAGMHISICVKEILEFLQIKPGQTGLDATLGYGGHTQEMLKCLDSKGHLYALDVDAIELE 133

Query: 73  CGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQ 128
             ++ +       E  ++ Q  F+ +     + G  D V+ DLGVSSMQID  DRGFS++
Sbjct: 134 KTRKRLEKLGYGPEILTIRQMNFADIDKIAEEAGPFDFVLADLGVSSMQIDNPDRGFSYK 193

Query: 129 KSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
             GPLD+R++   G+SA++ +     ++L  +L    +E  A  IA A+V + +  
Sbjct: 194 TEGPLDLRLNPEKGVSAAERLRTITRQELQGMLMENSDEPHADVIARAVVSKIKKG 249


>gi|33866828|ref|NP_898387.1| hypothetical protein SYNW2298 [Synechococcus sp. WH 8102]
 gi|33639429|emb|CAE08813.1| conserved hypothetical protein [Synechococcus sp. WH 8102]
          Length = 215

 Score =  168 bits (427), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 59/208 (28%), Positives = 101/208 (48%), Gaps = 10/208 (4%)

Query: 13  IHHTIGDHVPVLLEKVIAL--LNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDP 68
           +   +  HVPVL E V+      P    +++DAT G GG+S    +      +I LD+D 
Sbjct: 1   MPAPLFSHVPVLSEAVMDAGRQMPRAEGLLIDATLGGGGHSALMLEQQPGLRLIGLDQDA 60

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
            A +   E +  + ++ ++    F+   +Y P +    V+ DLGVSS Q+D  +RGFSF+
Sbjct: 61  TARAAAAERLAPFGDRVTIVATNFA---EYTPPEPALMVLADLGVSSPQLDVAERGFSFR 117

Query: 129 KSGPLDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQ-SAPF 185
             GPLDMRM+    G +A++++++    +L  ++   GEE+ + RIA  I         +
Sbjct: 118 LDGPLDMRMNAVGDGATAAELIDRLEENELADLIYAYGEERLSRRIARRIKADLAVQGAY 177

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRS 213
             T  L+  +          R  P+  +
Sbjct: 178 SGTAALAYAVAGCYPPQGTPRKDPSRHT 205


>gi|294670598|ref|ZP_06735477.1| hypothetical protein NEIELOOT_02323 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307723|gb|EFE48966.1| hypothetical protein NEIELOOT_02323 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 146

 Score =  168 bits (427), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 49/134 (36%), Positives = 68/134 (50%), Gaps = 7/134 (5%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69
           +      HV VLL + +  LN     V +D TFG GG+SR           ++  D+DP 
Sbjct: 1   MSSQEFQHVTVLLHEAVDGLNVVSDGVYVDGTFGRGGHSRLILSRLGEKGRLVVFDKDPQ 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFS 126
           A++   E +     + S+    FS  Q  +   G   +DG +FDLG+SS QID G RGFS
Sbjct: 61  AIAVAHE-LAARDGRVSVIHDGFSSFQTALDGLGIGQIDGTLFDLGISSPQIDDGSRGFS 119

Query: 127 FQKSGPLDMRMSCS 140
           F+   PLDMRM  +
Sbjct: 120 FRFDAPLDMRMDTT 133


>gi|295115795|emb|CBL36642.1| Predicted S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [butyrate-producing
           bacterium SM4/1]
          Length = 299

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 52/196 (26%), Positives = 96/196 (48%), Gaps = 11/196 (5%)

Query: 3   SKSCKTMSSAIHH---TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG- 58
            K   T+   I       G H+ + +++++   +  PG+V LDAT G GG++R   K   
Sbjct: 66  EKYRDTVEKVIQKGGTPAGMHISICVKEILDFFDIRPGQVGLDATLGYGGHTREMLKKLQ 125

Query: 59  --SNVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKG-VDGVVFDLG 112
              ++  LD DP      ++ + D     +  ++    F+ +     + G  D ++ DLG
Sbjct: 126 GQGHIYGLDVDPIESEKTKKRLADAGFGPDILTVKLMNFADIDKVAEEAGPFDFILADLG 185

Query: 113 VSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASR 171
           VSSMQID  +RGF+++  GPLD+RM  + G +A++ +   + ++   +L    +E  A  
Sbjct: 186 VSSMQIDNPERGFTYKYEGPLDLRMDPTRGETAAERLKGMDREEFCGMLMENSDEPYAEE 245

Query: 172 IAHAIVKRRQSAPFQT 187
           I+H +  R ++     
Sbjct: 246 ISHTVFSRLETGRKDR 261


>gi|261330354|emb|CBH13338.1| S-adenosyl-methyltransferase mraW-like protein,putative
           [Trypanosoma brucei gambiense DAL972]
          Length = 474

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 70/295 (23%), Positives = 128/295 (43%), Gaps = 40/295 (13%)

Query: 40  ILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQL 95
           +LD T G+G ++ +  + G     V+ALD D  A+   ++ + ++  ++F  +    S+ 
Sbjct: 130 VLDCTLGSGYHAGAVLENGGPYTRVVALDCDHDAMHAARDLVEEFGGDRFRFYCCKMSEA 189

Query: 96  QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG--PLDMRMSCS-GISASDVVNQAN 152
           +    ++  D ++ D GVS  Q++  +RGF     G   LDMR     G+ A + +N  +
Sbjct: 190 KAMFGERSFDAIMIDGGVSDTQLEDPERGFLLDDEGGHRLDMRFGPQMGVGALEYLNTVS 249

Query: 153 VKDLTRILGILG--EEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT--------VYFS 202
              L   L + G  E  QA +++ AI +R    PF  ++++ + I++             
Sbjct: 250 QHTLVSSLLVYGLLEYGQAMKMSRAITRR---KPFVDSREVLTCIEQAGDELPEGGWRSQ 306

Query: 203 KNNRIHPATRSF-QALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKF 261
            + R  P +  F  +LR  +NNE+ EL QG+ +A   L+  G L+V S    E+RLV+  
Sbjct: 307 GSRRKSPMSWKFLTSLRCIINNEMYELRQGIENALLMLRDDGRLVVFSRLPWEERLVRGT 366

Query: 262 FASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
                  +++    I  +       +                   R AK+    R
Sbjct: 367 VDDHPHALLSYVEDISIDDVQIYGFT-------------------RHAKMWVITR 402


>gi|320169060|gb|EFW45959.1| methyltransferase [Capsaspora owczarzaki ATCC 30864]
          Length = 642

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 68/226 (30%), Positives = 113/226 (50%), Gaps = 22/226 (9%)

Query: 32  LNP-APGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRD----YKE 83
           L P  P  ++LDATFGAGG+S +  +       + A+DRDP A+   ++  +     +  
Sbjct: 218 LAPTRPPLILLDATFGAGGHSAALLRHAPPNTTLFAIDRDPDAIQRAEQLGQTNSLFHSS 277

Query: 84  QFSLFQATFSQLQDYVPDKG-----VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138
           +F   Q +FSQ++  V D+G     VDG++ D+G  S Q+D   RGFSF   GPLDMRM 
Sbjct: 278 RFRPLQGSFSQMRQLVADQGIQPGSVDGILMDIGFCSTQVDDATRGFSFLCDGPLDMRMG 337

Query: 139 CSG-------ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191
                      +A+ V+     ++LT IL + GE  +A  IA AIV+ R++ P Q+T  L
Sbjct: 338 AGTAFELAAIPTAATVLATLRCEELTHILRLYGELPKARAIADAIVRTRKTTPIQSTLQL 397

Query: 192 SSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEK 237
           + + ++ V+             +  ++ ++ ++  +    L     
Sbjct: 398 ADIARRAVFS--EAEYKEWQLHWDKIKAYLQSQRSQSPTVLSQMLD 441



 Score =  102 bits (255), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 45/167 (26%), Positives = 66/167 (39%), Gaps = 46/167 (27%)

Query: 198 TVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRL 257
              F       PA + FQALR+FVN+EI EL  GL  A   L+ GG L V++F   E   
Sbjct: 476 AFRFQGRKVKDPARQVFQALRVFVNDEISELRAGLGQAIALLRPGGRLAVITFQGAETTA 535

Query: 258 VKKFFAS-----------------------RSGKVMAVRHM----------------IPS 278
           +++F  S                       RS      RH+                + S
Sbjct: 536 LRRFLQSPTAILAADSVRSLDEDAPAASNARSADSSRPRHISLNDRFLAQKLQEFEQMQS 595

Query: 279 NAHPAVF-------QSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318
           N  P  F        ++  K + P++ ++  N R+RSAKL    R++
Sbjct: 596 NNDPTHFPTSRALPLTVLHKAIGPSEHEIHRNPRARSAKLHVFERSL 642


>gi|72392687|ref|XP_847144.1| S-adenosyl-methyltransferase mraW-like protein [Trypanosoma brucei
           TREU927]
 gi|62176037|gb|AAX70159.1| S-adenosyl-methyltransferase mraW-like protein, putative
           [Trypanosoma brucei]
 gi|70803174|gb|AAZ13078.1| S-adenosyl-methyltransferase mraW-like protein, putative
           [Trypanosoma brucei brucei strain 927/4 GUTat10.1]
          Length = 474

 Score =  164 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 69/295 (23%), Positives = 126/295 (42%), Gaps = 40/295 (13%)

Query: 40  ILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQL 95
           +LD T G+G ++ +  + G     V+ALD D  A+   ++ + ++  ++   +    S+ 
Sbjct: 130 VLDCTLGSGYHAGAVLENGGPYTRVVALDCDHDAMHAARDLVEEFGGDRLRFYCCKMSEA 189

Query: 96  QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG--PLDMRMSCS-GISASDVVNQAN 152
           +    ++  D ++ D GVS  Q++  +RGF     G   LDMR     G+ A + +N  +
Sbjct: 190 KAMFGERSFDAIMIDGGVSDTQLEDPERGFLLDDEGGHRLDMRFGPQMGVGALEYLNTVS 249

Query: 153 VKDLTRILGILG--EEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT--------VYFS 202
              L   L   G  E  QA +++ AI +R    PF  ++++ + I++             
Sbjct: 250 QHTLVSSLLAYGLLEYGQAMKMSRAITRR---KPFVDSREVLTCIEQAGDELPEGGWRSQ 306

Query: 203 KNNRIHPATRSF-QALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKF 261
            + R  P +  F  +LR  +NNE+ EL QG+ +A   L+  G L+V S    E+RLV+  
Sbjct: 307 GSRRKSPMSWKFLTSLRCIINNEMYELRQGIENALLMLRDDGRLVVFSRLPWEERLVRGT 366

Query: 262 FASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
                  +++    I  +       +                   R AK+    R
Sbjct: 367 VDDHPHALLSYVEDISIDDVQIYGFT-------------------RHAKMWVITR 402


>gi|325914208|ref|ZP_08176560.1| putative S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325539592|gb|EGD11236.1| putative S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 146

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 53/138 (38%), Positives = 76/138 (55%), Gaps = 5/138 (3%)

Query: 12  AIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDP 68
            +      HVPVL  +V+  L    G   LD TFG GG++R   +    G  ++ +D+DP
Sbjct: 10  PVSQPPAAHVPVLYTQVLDGLQVTEGGAYLDGTFGRGGHARGVLQHLGPGGRLLVMDKDP 69

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128
            A++  ++T      + S+ + +F+ L   V    VDG++ DLGVSS Q+D   RGFSF 
Sbjct: 70  EAIAVAEQTFGG-DARVSIHRGSFAGLGQVVAAATVDGILLDLGVSSPQLDVAGRGFSFG 128

Query: 129 KSGPLDMRMSCS-GISAS 145
           K GPLDMRM    G SA+
Sbjct: 129 KDGPLDMRMDPDAGQSAA 146


>gi|322505001|emb|CAM36637.2| S-adenosyl-methyltransferase mraW-like protein [Leishmania
           braziliensis MHOM/BR/75/M2904]
          Length = 491

 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 69/314 (21%), Positives = 132/314 (42%), Gaps = 46/314 (14%)

Query: 28  VIALLNPAPGK----VI--LDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETM 78
           V+  L     +        LD TFG+G ++    + G   + V+A+D D  A    ++  
Sbjct: 128 VLDALVLREKQKRLVTYDVLDCTFGSGFHTGVVLENGRPYTRVVAMDCDVAATVSARKIA 187

Query: 79  RDYK-EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF--QKSGPLDM 135
            ++  ++F  +    S+ +    ++  D V+ D G S  Q++  +RGF    +    LDM
Sbjct: 188 DEFGAKRFRFYARPMSEAKAMFGERSFDAVMIDPGPSFTQLENPERGFLLGDESDHALDM 247

Query: 136 RMSC-SGISASDVVNQANVKDLTRIL--GILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           R      + A + +N      L+  L    L   +Q+ ++A AI +RR   PF     + 
Sbjct: 248 RYGLMYKLGALEYLNTVPQHALSGALASYELLTPQQSMKLARAIRQRR---PFGGAHRVL 304

Query: 193 SLIQKT--------VYFSKNNRIHPATRSF-QALRIFVNNEIEELAQGLRSAEKALKAGG 243
            ++++              + R    + +F  +LR  VN+E +EL++ L++A   L+A G
Sbjct: 305 EVVEEAGNELPEEGWMSQGSRRKTSMSWNFITSLRCIVNHERQELSEALQNALLLLRADG 364

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            L+V S    E++L+    +     +++   +IP                    ++V  +
Sbjct: 365 RLVVFSRLLWEEKLISATISQHPHALLSYSEVIPI-------------------DEVQEH 405

Query: 304 RRSRSAKLRAGMRT 317
             SR  K+    RT
Sbjct: 406 GHSRHTKMWIVTRT 419


>gi|332836125|ref|XP_508346.3| PREDICTED: methyltransferase like 15 isoform 2 [Pan troglodytes]
          Length = 279

 Score =  161 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 52/131 (39%), Positives = 79/131 (60%), Gaps = 7/131 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H+PV++++V+  L+P  G++ LD TFG+GG++++  +  S+  + ALDRDP A +  +  
Sbjct: 72  HIPVMVDEVVHCLSPQKGQIFLDMTFGSGGHTKAILQKESDIVLYALDRDPTAYALAEHL 131

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              Y +Q       FSQ +  +   GV     DGV+ DLG SSMQ+D  +RGFS +K GP
Sbjct: 132 SELYPKQIRAMLGQFSQAEALLMKAGVQPGTFDGVLMDLGCSSMQLDTPERGFSLRKDGP 191

Query: 133 LDMRMSCSGIS 143
           LDMRM     +
Sbjct: 192 LDMRMDGGRST 202


>gi|119588673|gb|EAW68267.1| methyltransferase 5 domain containing 1, isoform CRA_b [Homo
           sapiens]
          Length = 279

 Score =  161 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 52/131 (39%), Positives = 79/131 (60%), Gaps = 7/131 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H+PV++++V+  L+P  G++ LD TFG+GG++++  +  S+  + ALDRDP A +  +  
Sbjct: 72  HIPVMVDEVVHCLSPQKGQIFLDMTFGSGGHTKAILQKESDIVLYALDRDPTAYALAEHL 131

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              Y +Q       FSQ +  +   GV     DGV+ DLG SSMQ+D  +RGFS +K GP
Sbjct: 132 SELYPKQIRAMLGQFSQAEALLMKAGVQPGTFDGVLMDLGCSSMQLDTPERGFSLRKDGP 191

Query: 133 LDMRMSCSGIS 143
           LDMRM     +
Sbjct: 192 LDMRMDGGRST 202


>gi|115727005|ref|XP_001191227.1| PREDICTED: similar to methyltransferase 5 domain containing 1,
           partial [Strongylocentrotus purpuratus]
 gi|115891754|ref|XP_001186015.1| PREDICTED: similar to methyltransferase 5 domain containing 1,
           partial [Strongylocentrotus purpuratus]
          Length = 194

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 65/193 (33%), Positives = 104/193 (53%), Gaps = 16/193 (8%)

Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQTTQDLSSLIQK 197
            S  +A+DVVN  +   LT+IL   GEE  A +IA AI+  R +   F +T +L+++I  
Sbjct: 2   PSQPTAADVVNSLDHVTLTQILRTYGEESNAKKIAQAIIDYRTNFNTFSSTSELATVIA- 60

Query: 198 TVYFSKNNRI---------HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
             +  ++ +          H AT++FQALRIFVNNE+ ELA  + +A   ++ GG L V+
Sbjct: 61  CCHTHRDAKSNRDKLGRHAHTATKTFQALRIFVNNELNELAVAVEAAWDLMRPGGKLAVL 120

Query: 249 SFHSLEDRLVKKFFA-----SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
           +FHSLEDR+VK+         R   +   R     +     ++ + +  +    E++  N
Sbjct: 121 TFHSLEDRVVKRSLQGRHVAERGTSLRQKRVESHKDNGAQKWEVVKRNELCADDEEINMN 180

Query: 304 RRSRSAKLRAGMR 316
            R+RSAKLR  ++
Sbjct: 181 PRARSAKLRTAIK 193


>gi|46203082|ref|ZP_00052107.2| COG0275: Predicted S-adenosylmethionine-dependent methyltransferase
           involved in cell envelope biogenesis [Magnetospirillum
           magnetotacticum MS-1]
          Length = 141

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 60/140 (42%), Positives = 82/140 (58%), Gaps = 5/140 (3%)

Query: 42  DATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYV 99
           D TFGAGGY+R+         VIA+DRDP A+  G + +     +  L Q  F  L   +
Sbjct: 2   DGTFGAGGYTRALLDAAPEAQVIAIDRDPTAIRAGADLVAAANGRLRLIQGRFGDLDTLL 61

Query: 100 PDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDL 156
            ++G    D VV D+GVSSMQ+D   RGFSF++ GPLDMRM   G +A+D+VN+     L
Sbjct: 62  AEQGEAQADWVVLDIGVSSMQLDEAHRGFSFRQDGPLDMRMGGEGPTAADLVNETEEGML 121

Query: 157 TRILGILGEEKQASRIAHAI 176
             IL   GEE+++  +A AI
Sbjct: 122 ADILYHFGEERRSRAVARAI 141


>gi|255024442|ref|ZP_05296428.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL
           J1-208]
          Length = 126

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 41/122 (33%), Positives = 68/122 (55%), Gaps = 1/122 (0%)

Query: 197 KTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256
                ++    HP  R+FQA+RI VN+E+  +   L  A   LK GG + V++FHSLEDR
Sbjct: 3   AIPAPARRKGGHPGKRTFQAIRIAVNDELGAVEDSLEKALTLLKPGGRISVITFHSLEDR 62

Query: 257 LVKKFFASRSGKV-MAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGM 315
           + K+ F   + +  +     +  + +   F+  T+K +VP++E++  N R+RSAKLR   
Sbjct: 63  ITKQLFQEATKRPDLPPGLPVIPDEYKPDFKLATRKPIVPSEEELEQNNRARSAKLRVIE 122

Query: 316 RT 317
           + 
Sbjct: 123 KI 124


>gi|289426838|ref|ZP_06428564.1| MraW methylase family protein [Propionibacterium acnes J165]
 gi|289159927|gb|EFD08105.1| MraW methylase family protein [Propionibacterium acnes J165]
          Length = 165

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 47/153 (30%), Positives = 86/153 (56%), Gaps = 9/153 (5%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNP--APGK-VILDATFGAGGYSRSFCKMGSN--VIA 63
           M++    +   H+PV+  +++ LL      G+ V +D T G GG++ +  +   +  ++ 
Sbjct: 1   MATDAIGSDAVHIPVMRARILDLLAVVLKSGRRVHVDGTLGMGGHAEAVLRRFPDVELVG 60

Query: 64  LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDC 120
           +DRD  A++  +  +  + ++  L  A   +L + + D G   VD V+ DLG+SS QID 
Sbjct: 61  IDRDQQALTMAEARLEPFADRVHLVHAVHDELPEVLDDLGLDYVDSVLLDLGLSSFQIDE 120

Query: 121 GDRGFSFQKSGPLDMRMSC-SGISASDVVNQAN 152
            +RGFS+    PLDMRM   SG +A+ ++N+++
Sbjct: 121 VERGFSYSVDSPLDMRMDQSSGRTAAQILNESD 153


>gi|154337952|ref|XP_001565202.1| S-adenosyl-methyltransferase mraW-like protein [Leishmania
           braziliensis MHOM/BR/75/M2904]
          Length = 491

 Score =  159 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 69/314 (21%), Positives = 132/314 (42%), Gaps = 46/314 (14%)

Query: 28  VIALLNPAPGK----VI--LDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETM 78
           V+  L     +        LD TFG+G ++    + G   + V+A+D D  A    ++  
Sbjct: 128 VLDALVLREKQKRLVTYDVLDCTFGSGFHTGVVLENGRPYTRVVAMDCDVAATVSARKIA 187

Query: 79  RDYK-EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF--QKSGPLDM 135
            ++  ++F  +    S+ +    ++  D V+ D G S  Q++  +RGF    +    LDM
Sbjct: 188 DEFGAKRFRFYARPMSEAKAMFGERSFDAVMIDPGPSFTQLENPERGFLLGDESDHALDM 247

Query: 136 RMSC-SGISASDVVNQANVKDLTRIL--GILGEEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           R      + A + +N      L+  L    L   +Q+ ++A AI +RR   PF     + 
Sbjct: 248 RYGLMYKLGALEYLNTVPQHALSGALASYELLTPQQSMKLARAIRQRR---PFGGAHRVL 304

Query: 193 SLIQKT--------VYFSKNNRIHPATRSF-QALRIFVNNEIEELAQGLRSAEKALKAGG 243
            ++++              + R    + +F  +LR  VN+E +EL++ L++A   L+A G
Sbjct: 305 EVVEEAGNELPEEGWMSQGSRRKTSMSWNFITSLRCIVNHERQELSEPLQNALLLLRADG 364

Query: 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFN 303
            L+V S    E++L+    +     +++   +IP                    ++V  +
Sbjct: 365 RLVVFSRLLWEEKLISATISQHPHALLSYSEVIPI-------------------DEVQEH 405

Query: 304 RRSRSAKLRAGMRT 317
             SR  K+    RT
Sbjct: 406 GHSRHTKMWIVTRT 419


>gi|260889238|ref|ZP_05900501.1| MraW methylase family protein [Leptotrichia hofstadii F0254]
 gi|260860649|gb|EEX75149.1| MraW methylase family protein [Leptotrichia hofstadii F0254]
          Length = 129

 Score =  159 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 48/130 (36%), Positives = 77/130 (59%), Gaps = 3/130 (2%)

Query: 190 DLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249
           +L+ ++ K++   K+ + HPA R+FQA+RIFVN E+E L++ L  A K L   G L+V++
Sbjct: 2   ELADIVIKSI--GKSMKRHPAKRTFQAIRIFVNKELEVLSETLDKAVKLLNKNGRLLVIT 59

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           FHSLEDR+VK+ F          +   I      ++ + ITKK ++  + ++  N R+ S
Sbjct: 60  FHSLEDRIVKEKFREYEDPCTCPKDIPICVCNKKSLGKIITKKPIIAKKIELEENNRAHS 119

Query: 309 AKLRAGMRTV 318
           AKLR   R+ 
Sbjct: 120 AKLRIFERSE 129


>gi|21410962|gb|AAH30997.1| METT5D1 protein [Homo sapiens]
          Length = 212

 Score =  159 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 51/131 (38%), Positives = 78/131 (59%), Gaps = 7/131 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H+PV++++V+  L+P  G++ LD TFG+GG++++  +  S+  + ALDRDP A +  +  
Sbjct: 5   HIPVMVDEVVHCLSPQKGQIFLDMTFGSGGHTKAILQKESDIVLYALDRDPTAYALAEHL 64

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              Y +Q       FSQ +  +   GV     DGV+ DLG SSMQ+D  +RGFS +K G 
Sbjct: 65  SELYPKQIRAMLGQFSQAEALLMKAGVQPGTFDGVLMDLGCSSMQLDTPERGFSLRKDGS 124

Query: 133 LDMRMSCSGIS 143
           LDMRM     +
Sbjct: 125 LDMRMDGGRST 135


>gi|153844085|ref|ZP_01993621.1| MraW methylase family [Vibrio parahaemolyticus AQ3810]
 gi|149745262|gb|EDM56513.1| MraW methylase family [Vibrio parahaemolyticus AQ3810]
          Length = 148

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 49/140 (35%), Positives = 75/140 (53%), Gaps = 4/140 (2%)

Query: 181 QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240
           ++ P   T  L+ LI +    S   + HPATR+FQA RI++N+E+EE+   L+ A + L 
Sbjct: 8   ENEPMVRTGQLAKLISEAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALKGAARILA 67

Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSIT----KKVVVPT 296
             G L V+SFHSLEDR+VK+F    S        +  + A      S       K + P+
Sbjct: 68  PEGRLSVISFHSLEDRMVKRFIRKESKGPEVPHGIPLTEAQIKELGSANMKTVGKAIKPS 127

Query: 297 QEDVAFNRRSRSAKLRAGMR 316
           ++++  N RSRS+ LR   +
Sbjct: 128 KQEIDMNPRSRSSVLRIAEK 147


>gi|198413504|ref|XP_002123312.1| PREDICTED: similar to methyltransferase 5 domain containing 1,
           partial [Ciona intestinalis]
          Length = 190

 Score =  158 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 61/186 (32%), Positives = 103/186 (55%), Gaps = 15/186 (8%)

Query: 142 ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYF 201
           I+A+DVVN  + ++LT I+   G+E+ A  I+ +I++ R   P  TT +L+ ++      
Sbjct: 5   ITAADVVNNLDEEELTEIIYKYGDERNARNISSSIIENR---PISTTLELARVVSMAFSQ 61

Query: 202 SKN--------NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSL 253
           + +         R H AT++F A+RIFVN+E+ E+  G++++EK L  GG + V++FHSL
Sbjct: 62  TSDVFRVDSLGRRCHIATKTFMAIRIFVNDELNEICHGIKTSEKYLMNGGKMGVITFHSL 121

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKK---VVVPTQEDVAFNRRSRSAK 310
           EDR+VK+               +         +   K+   +++P+ E++  N RSRSAK
Sbjct: 122 EDRVVKRMLKQIEIS-KPFNVKMGVGKRSKTERRYWKREQSLLLPSGEEIEQNPRSRSAK 180

Query: 311 LRAGMR 316
           LR   R
Sbjct: 181 LRIATR 186


>gi|205830884|sp|P0C7V9|ME15P_HUMAN RecName: Full=Putative methyltransferase-like protein 15P1;
           AltName: Full=Methyltransferase 5 domain-containing
           protein 2; AltName: Full=Methyltransferase-like protein
           15 pseudogene 1
 gi|119599129|gb|EAW78723.1| hCG2022166, isoform CRA_a [Homo sapiens]
          Length = 234

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 54/157 (34%), Positives = 86/157 (54%), Gaps = 9/157 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           H+PV++++V+  L+P  G++ LD TFG+GG++++  +  S+  + ALDRDP A +  +  
Sbjct: 72  HIPVMVDEVVHCLSPQKGQIFLDMTFGSGGHTKAILQKESDIVLYALDRDPTAYALAEHL 131

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              Y +Q       FSQ +  +   GV     DGV+ DLG SSMQ+D  +RG S +K GP
Sbjct: 132 SELYPKQIRAMLGQFSQAEALLMKAGVQPGTFDGVLMDLGCSSMQLDTPERGSSLRKDGP 191

Query: 133 LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQA 169
           LD+RM   G + S +        LT  + +   +   
Sbjct: 192 LDIRMD-GGRNISSLCYLYTE-RLTTAIYLYCHQDFP 226


>gi|148228894|ref|NP_001085383.1| methyltransferase like 15 [Xenopus laevis]
 gi|49258062|gb|AAH71163.1| MGC84490 protein [Xenopus laevis]
          Length = 191

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 58/126 (46%), Positives = 73/126 (57%), Gaps = 7/126 (5%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQET 77
           HVPV++ +VI  L P  G+ ILD TFGAGG++ S  +  SN  ++ALDRDP A +  Q+ 
Sbjct: 45  HVPVMVNEVIECLAPQEGQTILDLTFGAGGHTTSILRQASNIKILALDRDPAAFAIAQQL 104

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGP 132
              Y          FS+ +D +   GV     DGV+ D G SSMQ D  DRGFS  K GP
Sbjct: 105 AHGYGPNIQPLLGRFSEAEDLLKSAGVEPGSIDGVLLDAGCSSMQFDTPDRGFSLSKDGP 164

Query: 133 LDMRMS 138
           LDMRM 
Sbjct: 165 LDMRMD 170


>gi|207109224|ref|ZP_03243386.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 158

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 50/159 (31%), Positives = 87/159 (54%), Gaps = 7/159 (4%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70
           +      H  VLL++V+    P    V++D T G GG+S++      +  +I +D+D FA
Sbjct: 1   MQEIENLHQSVLLQEVLQAFAPLEKGVLIDCTLGLGGHSKAILSQKPHLKLIGIDKDKFA 60

Query: 71  VSCGQETMRDYKEQFSLFQATFSQ-LQDYVPDKG--VDGVVFDLGVSSMQIDCGDRGFSF 127
               +E +++++ +++L    F++  ++ +      + GV+ DLGVSS+Q+D  +RGF+F
Sbjct: 61  QEIAKERLKEFEGRYNLLSGGFAKRFKEALETHNKEIKGVLVDLGVSSLQLDDDNRGFNF 120

Query: 128 QKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGE 165
             S  LDMRM   S ++A  V+N   V  L +I    GE
Sbjct: 121 -HSHALDMRMDLESELNAQKVINSYPVIALEKIFKDYGE 158


>gi|198431217|ref|XP_002121381.1| PREDICTED: similar to MGC84490 protein [Ciona intestinalis]
          Length = 226

 Score =  156 bits (394), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 55/165 (33%), Positives = 79/165 (47%), Gaps = 18/165 (10%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRD 67
           S         H+PV+ E++++ LN   G VI+D TFGAGG+++   +      VIALDRD
Sbjct: 26  SRPNSKETALHIPVMAEELVSGLNIKRGDVIIDMTFGAGGHTKFIMENYKHCKVIALDRD 85

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV-----DGVVFDLGVSSMQIDCGD 122
             A    Q+  + +K +       FS+L   + D G+     + V+ D G SSMQ D  +
Sbjct: 86  EKAFEIAQDLSKKFKGRIIPLLGKFSELDKLLSDHGIVENSLNAVLLDAGCSSMQFDQPE 145

Query: 123 RGFSFQKSGPLDMRMS-----------CSGISASDVVNQANVKDL 156
           RGFS  + GPLDMRM             +G+S     N      L
Sbjct: 146 RGFSLVRDGPLDMRMDGNRWDVLFNFSMNGLSGGWWFNNCFRAQL 190


>gi|72025930|ref|XP_795360.1| PREDICTED: similar to methyltransferase 5 domain containing 1
           [Strongylocentrotus purpuratus]
 gi|115727007|ref|XP_001191279.1| PREDICTED: similar to methyltransferase 5 domain containing 1
           [Strongylocentrotus purpuratus]
          Length = 187

 Score =  149 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 47/126 (37%), Positives = 71/126 (56%), Gaps = 5/126 (3%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQET 77
           H PV++E+V++   P   +V +D TFG GG++++  K      V  LDRDPFA    Q+ 
Sbjct: 61  HKPVMVEEVLSFFAPQANQVYIDMTFGGGGHTQALMKCAPGITVYGLDRDPFAHQIAQKL 120

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
              +K Q       FS+++D +  +    VDG++ D G SS Q D  +RGF+  + GPLD
Sbjct: 121 SLHHKGQLCPLLGKFSEVKDLLSQREVSMVDGILIDAGCSSFQFDSPERGFALSQDGPLD 180

Query: 135 MRMSCS 140
           MRM  +
Sbjct: 181 MRMDAN 186


>gi|70927460|ref|XP_736113.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56510372|emb|CAH87288.1| hypothetical protein PC302411.00.0 [Plasmodium chabaudi chabaudi]
          Length = 243

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 64/249 (25%), Positives = 110/249 (44%), Gaps = 51/249 (20%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQE 76
           DH P+LL            + ++DAT G GG++    K  + +  I++D+D  A+   + 
Sbjct: 4   DH-PILLH--------NQNEYMIDATLGGGGHTLEILKKFTKLKVISIDKDIEAIYYNKY 54

Query: 77  TMRDYKE--QFSLFQATFSQLQDYVPDKGV------DGVVFDLGVSSMQIDCGDRGFSFQ 128
            ++ Y +  +  L    +  +   +    +        ++ DLGVS+ Q+    RGFS++
Sbjct: 55  KLKSYIDTNRLKLIHGNYKDILFLLNYHSLPLFNSYSAILVDLGVSTHQLKSSKRGFSYK 114

Query: 129 KSGPLDMRMSC-------------------------------SGISASDVVNQANVKDLT 157
            +  LDM M+                                 G    +++N  N+K L 
Sbjct: 115 YNNILDMNMNKYTEKEYVENYINKELKQDNEIKELYMTSEIEDGKKIHNILNTYNLKKLK 174

Query: 158 RILGILGEEKQASRIAHAIVKRR-QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQA 216
            I+   GEEK+A +IA  I++ R Q+    TT DL ++I  T   +  +     +R FQA
Sbjct: 175 YIIQKFGEEKKAFKIAKKIIEWRKQNKEIVTTFDLKNIILSTCKNNYKSNNKVLSRVFQA 234

Query: 217 LRIFVNNEI 225
            RI+VNNE+
Sbjct: 235 FRIYVNNEL 243


>gi|71412140|ref|XP_808269.1| S-adenosyl-methyltransferase mraW-like protein [Trypanosoma cruzi
           strain CL Brener]
 gi|70872439|gb|EAN86418.1| S-adenosyl-methyltransferase mraW-like protein, putative
           [Trypanosoma cruzi]
          Length = 464

 Score =  148 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 68/300 (22%), Positives = 122/300 (40%), Gaps = 40/300 (13%)

Query: 40  ILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQL 95
           +LD T G G ++ +  + G     V+ALD D   +    E + ++  ++F  F    S+ 
Sbjct: 120 VLDCTLGGGYHAGAVLENGGPYTRVVALDCDHDVMQTAMELVDEFGADRFKFFCRQMSEA 179

Query: 96  QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP--LDMRMSCS-GISASDVVNQAN 152
           +    ++  D V+ D G S  Q++  +RGF         LDMR     GI A   +N   
Sbjct: 180 KSLFGERSFDAVMIDPGPSETQLENPERGFLLDDENSHHLDMRYGPQLGIGALAYLNTVP 239

Query: 153 VKDLTRILGILG--EEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSK------- 203
              L+  L   G    +Q+ ++A  +  RR   PF +++D+   ++              
Sbjct: 240 QHALSGALSAYGLLTPEQSMKMAREVRCRR---PFTSSRDVIGCVEAAGDMLPEEVWSTQ 296

Query: 204 --NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKF 261
               +   + + F +LR  +NNE+ EL + L +A   L+  G L+V S    E+RL++  
Sbjct: 297 SSRRKTPMSWKFFTSLRCILNNEMYELREALENALLLLRDDGRLVVFSRLMWEERLIQST 356

Query: 262 FASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERS 321
             S    ++     +P                    E+V  +  +R  K+    R  + S
Sbjct: 357 VESHPHALLCYTEDVPM-------------------EEVCEHGFTRHTKMWVASRVAKSS 397


>gi|71424845|ref|XP_812929.1| S-adenosyl-methyltransferase mraW-like protein [Trypanosoma cruzi
           strain CL Brener]
 gi|70877764|gb|EAN91078.1| S-adenosyl-methyltransferase mraW-like protein, putative
           [Trypanosoma cruzi]
          Length = 464

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 67/300 (22%), Positives = 121/300 (40%), Gaps = 40/300 (13%)

Query: 40  ILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQL 95
           +LD T G G ++ +  + G     V+ALD D   +    E + ++  ++F  F    S+ 
Sbjct: 120 VLDCTLGGGYHAGAVLENGGPYTRVVALDCDHDVMQTAMELVDEFGADRFKFFCRQMSEA 179

Query: 96  QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP--LDMRMSCS-GISASDVVNQAN 152
           +    ++  D V+ D G S  Q++  +RGF         LDMR     GI A   +N   
Sbjct: 180 KSLFGERSFDAVMIDPGPSETQLENPERGFLLDDENSHHLDMRYGPQLGIGALAYLNTVP 239

Query: 153 VKDLTRILGILG--EEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSK------- 203
              L+  L        +Q+ ++A  + +RR   PF +++D+   ++              
Sbjct: 240 QHALSGALSAYALLTPEQSMKMAREVRRRR---PFTSSRDVIGCVEAAGDMLPEEVWSTQ 296

Query: 204 --NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKF 261
               +   + + F +LR  +NNE+ EL + L +A   L+  G L+V S    E+RL++  
Sbjct: 297 SSRRKTPMSWKFFTSLRCILNNEMYELREALENALLLLRDDGRLVVFSRLVWEERLIQST 356

Query: 262 FASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERS 321
             S    ++     +P                    E+V  +  +R  K+    R    S
Sbjct: 357 VESHPHALLCYTEDVPM-------------------EEVCEHGFTRHTKMWVASRVANSS 397


>gi|322827176|gb|EFZ31465.1| S-adenosyl-methyltransferase mraW-like protein, putative
           [Trypanosoma cruzi]
          Length = 516

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 68/300 (22%), Positives = 122/300 (40%), Gaps = 40/300 (13%)

Query: 40  ILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQL 95
           +LD T G G ++ +  + G     V+ALD D   +    E + ++  ++F  F    S+ 
Sbjct: 172 VLDCTLGGGYHAGAVLENGGPYTRVVALDCDHDVMQTAMELVDEFGADRFKFFCRQMSEA 231

Query: 96  QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP--LDMRMSCS-GISASDVVNQAN 152
           +    ++  D V+ D G S  Q++  +RGF         LDMR     GI A   +N   
Sbjct: 232 KSLFGERSFDAVMIDPGPSETQLENPERGFLLDDENSHHLDMRYGSQLGIGALAYLNTVP 291

Query: 153 VKDLTRILGILG--EEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSK------- 203
              L+  L   G    +Q+ ++A  +  RR   PF +++D+   ++              
Sbjct: 292 QHALSGALSAYGLLTPEQSMKMAREVRCRR---PFTSSRDVIGCVEAAGDMLPEEVWSTQ 348

Query: 204 --NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKF 261
               +   + + F +LR  +NNE+ EL + L +A   L+  G L+V S    E+RL++  
Sbjct: 349 SSRRKTPMSWKFFTSLRCILNNEMYELREALENALLLLRDDGRLVVFSRLMWEERLIQST 408

Query: 262 FASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVERS 321
             S    ++     +P                    E+V  +  +R  K+    R  + S
Sbjct: 409 VESHPHALLCYTEDVPM-------------------EEVCEHGFTRHTKMWVASRVAKSS 449


>gi|307069557|ref|YP_003878034.1| S-adenosyl-methyltransferase MraW [Candidatus Zinderia insecticola
           CARI]
 gi|306482817|gb|ADM89688.1| S-adenosyl-methyltransferase MraW [Candidatus Zinderia insecticola
           CARI]
          Length = 285

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 67/308 (21%), Positives = 138/308 (44%), Gaps = 34/308 (11%)

Query: 17  IGDHVPVLLEKVIALL-NPAPGK-VILDATFGAGGY--SRSFCKMGSNVIALDRDPFAVS 72
           I +  P+L+ ++  +L N    K + +DAT G   +    +       ++A ++D    +
Sbjct: 3   INNKFPILISEIFNILKNIKINKDIFIDATMGMAKHLKKINKKIEIKKILAFEKD----N 58

Query: 73  CGQETMRDYKEQFSLFQATFSQL---QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
                 +   ++  +    F  +      +  K ++ ++FDLG+S  QI     GFS++K
Sbjct: 59  LIFNRNKIKMKKIFIVNDNFKNIFKILKLLKIKKINFILFDLGISLFQI-INKNGFSYKK 117

Query: 130 SGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           +  LDMR++      A  ++N    + + +I      +K   +I + I+  R+    + T
Sbjct: 118 NSLLDMRINNKLNKPAYKILNNYKKEKILKIFNYYRNKKYFFKIVNLIIYNRKKKEIKKT 177

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248
            DL ++I+K    +KN   +  ++ FQ +R ++N   + L   L++        G++I++
Sbjct: 178 FDLINIIKKVT--NKNKINNYISKIFQIIRNYINK--DNLKNILKNIILKYLYKGIIIII 233

Query: 249 SFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRS 308
           SFHS+ED ++K  F     K       I                 +P + ++  N +SRS
Sbjct: 234 SFHSIEDNIIKNMFYKNKFKKKIKLLKI-----------------IPQKLEIFLNYKSRS 276

Query: 309 AKLRAGMR 316
           + +R  ++
Sbjct: 277 SIMRIILK 284


>gi|221502434|gb|EEE28161.1| S-adenosyl-methyltransferase mraw, putative [Toxoplasma gondii VEG]
          Length = 1189

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 57/167 (34%), Positives = 83/167 (49%), Gaps = 11/167 (6%)

Query: 104  VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGIL 163
            +DGV      SS  ++    G    + G LD         A+ VVN      L  I    
Sbjct: 896  IDGVAAANDSSSHGLENAPSGIGGSRGGNLD---------AAQVVNSLPQAALAYIFKTF 946

Query: 164  GEEKQASRIAHAIVKRRQSAPF-QTTQDLSSLIQKTVYFSKNNR-IHPATRSFQALRIFV 221
            GEE+ A  IA  IV+ R+     +TT++L  +I+    +      I   +R FQALR++V
Sbjct: 947  GEERLAGPIASCIVRYREIHGLLKTTEELRQIIEDCCRYRNPQFVIKTCSRVFQALRMYV 1006

Query: 222  NNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGK 268
            N E+E L   L  AE+ LK GG L+++S+HSLEDRL+K+     +  
Sbjct: 1007 NQELESLDSLLTHAERLLKPGGRLVILSYHSLEDRLIKQRLKQNNKN 1053



 Score = 86.4 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 4/71 (5%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAV 71
           +  +HVPV++ +V+  L  +   + +D T G GG++ +  +     G  ++A+DRD  AV
Sbjct: 545 SYHEHVPVMVNEVLQYLITSKDGLYIDCTAGGGGHAEAIWRAVEFEGGRLLAIDRDEEAV 604

Query: 72  SCGQETMRDYK 82
           +  +  MR  +
Sbjct: 605 AATRNRMRQLR 615



 Score = 57.1 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/37 (51%), Positives = 23/37 (62%)

Query: 101 DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
           +  VDG+  DLGVS+ Q+    RGFS    GPLDMR 
Sbjct: 815 EGTVDGIFADLGVSTHQLTAAHRGFSHSIDGPLDMRF 851



 Score = 54.0 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 23/39 (58%)

Query: 278  SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
            +     ++  + KK + P +E+V  NRR+R+AK+R   +
Sbjct: 1141 NERENKLWHLVLKKPLKPKEEEVLRNRRARTAKMRVAAK 1179


>gi|221482188|gb|EEE20549.1| S-adenosyl-methyltransferase mraw, putative [Toxoplasma gondii GT1]
          Length = 1191

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 57/167 (34%), Positives = 83/167 (49%), Gaps = 11/167 (6%)

Query: 104  VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGIL 163
            +DGV      SS  ++    G    + G LD         A+ VVN      L  I    
Sbjct: 896  IDGVAAANDSSSHGLENAPSGIGGSRGGNLD---------AAQVVNSLPQAALAYIFKTF 946

Query: 164  GEEKQASRIAHAIVKRRQSAPF-QTTQDLSSLIQKTVYFSKNNR-IHPATRSFQALRIFV 221
            GEE+ A  IA  IV+ R+     +TT++L  +I+    +      I   +R FQALR++V
Sbjct: 947  GEERLAGPIASCIVRYREIHGLLKTTEELRQIIEDCCRYRNPQFVIKTCSRVFQALRMYV 1006

Query: 222  NNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGK 268
            N E+E L   L  AE+ LK GG L+++S+HSLEDRL+K+     +  
Sbjct: 1007 NQELESLDSLLTHAERLLKPGGRLVILSYHSLEDRLIKQRLKQNNKN 1053



 Score = 86.4 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 4/71 (5%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAV 71
           +  +HVPV++ +V+  L  +   + +D T G GG++ +  +     G  ++A+DRD  AV
Sbjct: 545 SYHEHVPVMVNEVLQYLITSKDGLYIDCTAGGGGHAEAIWRAVEFEGGRLLAIDRDEEAV 604

Query: 72  SCGQETMRDYK 82
           +  +  MR  +
Sbjct: 605 AATRNRMRQLR 615



 Score = 57.1 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/37 (51%), Positives = 23/37 (62%)

Query: 101 DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
           +  VDG+  DLGVS+ Q+    RGFS    GPLDMR 
Sbjct: 815 EGTVDGIFADLGVSTHQLTAAHRGFSHSIDGPLDMRF 851


>gi|237843145|ref|XP_002370870.1| S-adenosyl-methyltransferase mraW, putative [Toxoplasma gondii
           ME49]
 gi|211968534|gb|EEB03730.1| S-adenosyl-methyltransferase mraW, putative [Toxoplasma gondii
           ME49]
          Length = 1062

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 57/167 (34%), Positives = 83/167 (49%), Gaps = 11/167 (6%)

Query: 104 VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGIL 163
           +DGV      SS  ++    G    + G LD         A+ VVN      L  I    
Sbjct: 769 IDGVAAANDSSSHGLENAPSGIGGSRGGNLD---------AAQVVNSLPQAALAYIFKTF 819

Query: 164 GEEKQASRIAHAIVKRRQSAPF-QTTQDLSSLIQKTVYFSKNNR-IHPATRSFQALRIFV 221
           GEE+ A  IA  IV+ R+     +TT++L  +I+    +      I   +R FQALR++V
Sbjct: 820 GEERLAGPIASCIVRYREIHGLLKTTEELRQIIEDCCRYRNPQFVIKTCSRVFQALRMYV 879

Query: 222 NNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGK 268
           N E+E L   L  AE+ LK GG L+++S+HSLEDRL+K+     +  
Sbjct: 880 NQELESLDSLLTHAERLLKPGGRLLILSYHSLEDRLIKQRLKQNNKN 926



 Score = 87.5 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 4/71 (5%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAV 71
           +  +HVPV++ +V+  L  +   + +D T G GG++ +  +     G  ++A+DRD  AV
Sbjct: 418 SYHEHVPVMVNEVLQYLITSKDGLYIDCTAGGGGHAEAIWRAVEFEGGRLLAIDRDEEAV 477

Query: 72  SCGQETMRDYK 82
           +  +  MR  +
Sbjct: 478 AATRNRMRQLR 488



 Score = 57.9 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/37 (51%), Positives = 23/37 (62%)

Query: 101 DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
           +  VDG+  DLGVS+ Q+    RGFS    GPLDMR 
Sbjct: 688 EGTVDGIFADLGVSTHQLTAAHRGFSHSIDGPLDMRF 724



 Score = 54.8 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 23/39 (58%)

Query: 278  SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
            +     ++  + KK + P +E+V  NRR+R+AK+R   +
Sbjct: 1014 NERENKLWHLVLKKPLKPKEEEVLRNRRARTAKMRVAAK 1052


>gi|330981225|gb|EGH79328.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 122

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 46/118 (38%), Positives = 65/118 (55%), Gaps = 2/118 (1%)

Query: 201 FSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKK 260
            +     +PATR+FQ LRI VNNE+ +L  GL +A  AL+ GG L+V+SFHSLEDR+VK 
Sbjct: 3   PAWEKGKNPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLVVISFHSLEDRIVKL 62

Query: 261 FFASRS-GKVMAVRHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           F    + G+   +   +P    P   +  I  K    +  +   N RSRSA +R   +
Sbjct: 63  FMRKLAKGEADNMPRNLPIQYKPFEPKIKIHGKAQFASDVETKANPRSRSAVMRVAEK 120


>gi|258539487|ref|YP_003173986.1| methyltransferase [Lactobacillus rhamnosus Lc 705]
 gi|257151163|emb|CAR90135.1| Methyltransferase [Lactobacillus rhamnosus Lc 705]
          Length = 115

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 41/112 (36%), Positives = 61/112 (54%), Gaps = 3/112 (2%)

Query: 210 ATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRS--G 267
             + FQA+RI VN+E+  L   L  A K +  GG + V++F SLEDRLVK  F   S   
Sbjct: 5   LKKVFQAIRIAVNDELSALEASLEQALKLINVGGRISVITFQSLEDRLVKTMFKEVSTVQ 64

Query: 268 KVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319
            V     ++P  A P  +Q + +K ++P+  ++A N R+ SAKLR   +   
Sbjct: 65  DVPRGLPVVPEAAQPH-YQLVNRKPILPSAAELAENHRAHSAKLRVIEKIRN 115


>gi|156329544|ref|XP_001619047.1| hypothetical protein NEMVEDRAFT_v1g152542 [Nematostella vectensis]
 gi|156201404|gb|EDO26947.1| predicted protein [Nematostella vectensis]
          Length = 150

 Score =  139 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 58/150 (38%), Positives = 78/150 (52%), Gaps = 17/150 (11%)

Query: 40  ILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQ--ETMRDYKEQFSLFQATFSQLQ 96
            +DATFGAGG++ +        V A+DRDP AV   Q   T  +YK Q    Q  FS L 
Sbjct: 1   FVDATFGAGGHTCAILNSAKCKVFAVDRDPVAVEIAQVLSTRPEYKGQLIPLQGKFSDLF 60

Query: 97  DYVPDKGV-----DGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC---------SGI 142
           + + + G+     DG++ D+G SSMQ D   RGFS  K GPLDMRM           S  
Sbjct: 61  ELLSNNGIKKESLDGMLLDIGPSSMQFDDPLRGFSLSKDGPLDMRMDSENDTKSSRNSSF 120

Query: 143 SASDVVNQANVKDLTRILGILGEEKQASRI 172
           +A+DVVN  + ++L  +L   G E+ A   
Sbjct: 121 TAADVVNSISERELISVLRHYGGERDAGMY 150


>gi|2738256|gb|AAB94406.1| putative ipaD homolog [Rickettsia typhi str. Wilmington]
          Length = 124

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/123 (39%), Positives = 75/123 (60%), Gaps = 1/123 (0%)

Query: 89  QATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVV 148
           ++ F+     +  +  DG+V DLGVSSMQ+D   RGFSF   GPLDMRMS  G SA + V
Sbjct: 3   KSNFADSFGKLKQQKFDGIVMDLGVSSMQLDIAGRGFSFLYDGPLDMRMSAQGFSAEEFV 62

Query: 149 NQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIH 208
           N A+ ++++ ++   G E  + RIA  I+K R+ A   +T+ L+ +++ ++ F K  +I 
Sbjct: 63  NTADEQEISDVIYKYGNESLSRRIAKNIIKYRKIARIDSTRKLAEIVRYSIGFRK-GKIA 121

Query: 209 PAT 211
            AT
Sbjct: 122 FAT 124


>gi|33322183|gb|AAQ06812.1|AF496152_1 hypothetical protein [Lactobacillus delbrueckii subsp. lactis]
          Length = 119

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 42/108 (38%), Positives = 65/108 (60%), Gaps = 1/108 (0%)

Query: 99  VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSG-ISASDVVNQANVKDLT 157
           +   G+DG+ +DLGVSS Q+D  +RGFS++    LDMRM  S    A  +VNQ + K L 
Sbjct: 11  LGISGIDGIYYDLGVSSPQLDQAERGFSYRFDARLDMRMDQSQDFDAYQLVNQYDQKQLA 70

Query: 158 RILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNN 205
            +L   G+EK + +IA  IV+RR+  P +TT +L  +I++ +  +   
Sbjct: 71  DVLYRYGDEKFSRQIARKIVERRRVKPIETTFELVEIIKEAIPAAARR 118


>gi|225389940|ref|ZP_03759664.1| hypothetical protein CLOSTASPAR_03690 [Clostridium asparagiforme
           DSM 15981]
 gi|225043994|gb|EEG54240.1| hypothetical protein CLOSTASPAR_03690 [Clostridium asparagiforme
           DSM 15981]
          Length = 111

 Score =  135 bits (341), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 54/111 (48%), Gaps = 5/111 (4%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFA 70
           +      H  VLL + +  LN  PG   +D T G GG++    K      +I +D+D  A
Sbjct: 1   MEELKFGHTSVLLYETVGSLNIIPGGCYVDGTLGGGGHALEVLKRLGHGRLIGIDQDEDA 60

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQI 118
           +    + ++ + ++ ++ +  +  ++  +     + VDG+  DLGVSS Q+
Sbjct: 61  IRAAGQRLKAFADKVTIVRDNYRNIRSVLEQLSVEKVDGIYLDLGVSSYQL 111


>gi|261885262|ref|ZP_06009301.1| S-adenosyl-methyltransferase MraW [Campylobacter fetus subsp.
           venerealis str. Azul-94]
          Length = 111

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 31/105 (29%), Positives = 56/105 (53%), Gaps = 2/105 (1%)

Query: 212 RSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMA 271
            +FQA+RI VN E++EL   L   + +     +L ++SFHSLED++ K  F       + 
Sbjct: 1   MAFQAIRIEVNKELDELNNLLNLIKSSKINNAILDIISFHSLEDKIAKSTFKEWEKSCIC 60

Query: 272 VRHM--IPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAG 314
              +       + ++ + +TKK + P+++++  N RS  AK+R  
Sbjct: 61  DNFVMKCECGNNHSIGKILTKKPITPSEDEIKQNPRSSCAKMRIF 105


>gi|115691196|ref|XP_001203985.1| PREDICTED: similar to methyltransferase 5 domain containing 1,
           partial [Strongylocentrotus purpuratus]
 gi|115735657|ref|XP_001187798.1| PREDICTED: similar to methyltransferase 5 domain containing 1,
           partial [Strongylocentrotus purpuratus]
          Length = 140

 Score =  122 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 42/117 (35%), Positives = 65/117 (55%), Gaps = 5/117 (4%)

Query: 205 NRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFA- 263
              H AT++FQALRIFVNNE+ ELA  + +A   ++ GG L V++FHSLEDR+VK+    
Sbjct: 23  RHAHTATKTFQALRIFVNNELNELAVAVEAAWDLMRPGGKLAVLTFHSLEDRVVKRSLQG 82

Query: 264 ----SRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
                R   +   R     +     ++ + +  +    E++  N R+RSAKLR  ++
Sbjct: 83  RHVAERGTSLRQKRVESHKDNGAQKWEVVKRNELCADDEEINMNPRARSAKLRTAIK 139


>gi|299143951|ref|ZP_07037031.1| S-adenosyl-methyltransferase MraW [Peptoniphilus sp. oral taxon 386
           str. F0131]
 gi|298518436|gb|EFI42175.1| S-adenosyl-methyltransferase MraW [Peptoniphilus sp. oral taxon 386
           str. F0131]
          Length = 83

 Score =  122 bits (307), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 1/82 (1%)

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAV-RHMIPSNAHPAVFQSITKKVVV 294
              L  GG + V+SFHSLEDR+VK+ F       +   +  + +       + IT+K +V
Sbjct: 1   MDRLNPGGRIAVISFHSLEDRIVKETFKYYYLDCICPEKAPVCNCGKKREIEIITRKPIV 60

Query: 295 PTQEDVAFNRRSRSAKLRAGMR 316
            +++++  N R+ SAKLR   +
Sbjct: 61  ASEKELIENNRAHSAKLRVAEK 82


>gi|295099855|emb|CBK88944.1| Predicted S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [Eubacterium cylindroides
           T2-87]
          Length = 107

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 32/100 (32%), Positives = 53/100 (53%)

Query: 219 IFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPS 278
           + VN E+ +L   L+   K LK  G + V++FHSLEDR+VKK F   +      + +   
Sbjct: 1   MEVNQELPQLEVVLKEGLKRLKPHGRMCVITFHSLEDRIVKKIFKEVAVPKKVDKRLPSL 60

Query: 279 NAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318
                 +Q + +K V+ +++++  N R+ SAKLR   R  
Sbjct: 61  GIENLEYQLVNRKPVLASKQELDTNYRAHSAKLRGIERNE 100


>gi|317473099|ref|ZP_07932398.1| S-adenosyl-methyltransferase MraW [Anaerostipes sp. 3_2_56FAA]
 gi|316899437|gb|EFV21452.1| S-adenosyl-methyltransferase MraW [Anaerostipes sp. 3_2_56FAA]
          Length = 115

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 40/115 (34%), Positives = 55/115 (47%), Gaps = 14/115 (12%)

Query: 202 SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKF 261
            K        R+FQALRI VN+E E L + L      L  GG   +++FHS EDRLVKK 
Sbjct: 14  KKEAVKKTCQRTFQALRIDVNSEFEVLYEFLEKLPNVLAKGGRAAILTFHSGEDRLVKKS 73

Query: 262 FASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
           F                     V+Q I+  V+ P+ E+   N R+RS K+R  ++
Sbjct: 74  FKRL--------------LREGVYQEISTDVIRPSAEECRMNSRARSTKMRWAIK 114


>gi|68065600|ref|XP_674783.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56493579|emb|CAH96215.1| conserved hypothetical protein [Plasmodium berghei]
          Length = 220

 Score =  119 bits (298), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 63/236 (26%), Positives = 106/236 (44%), Gaps = 57/236 (24%)

Query: 123 RGFSFQKSGPLDMRMSC----------------------------------------SGI 142
           RGFS++ +  LDM M+                                            
Sbjct: 1   RGFSYKYNDILDMNMNKYTEKEYIKDHINKELKQDSKIKELYMTSESHDNNIYHKNYDSK 60

Query: 143 SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQTTQDLSSLIQKTVYF 201
              D++N  N+K L  I+   GEEK+A +IA  I++ R+      TT DL ++I  T   
Sbjct: 61  KIHDILNTYNLKKLKYIIQKFGEEKKAFKIAKKIIEWRKKNGEIITTFDLKNIILSTCKN 120

Query: 202 SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKF 261
           +  +     +R FQ+ RI++N+E+  L   L S+ K LK GG+LIV+S+HSLE++ +  F
Sbjct: 121 NYKSNNKVLSRVFQSFRIYINSELLSLKNLLLSSHKILKQGGVLIVISYHSLENKYIDLF 180

Query: 262 FASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
             +++                 ++  I  + +VPT +++  N+ SRSAK+    + 
Sbjct: 181 VKNKTK----------------LWNQINIQPIVPTDQEIKLNKSSRSAKMFVFKKI 220


>gi|163784407|ref|ZP_02179294.1| hypothetical protein HG1285_12402 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880321|gb|EDP73938.1| hypothetical protein HG1285_12402 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 115

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 38/114 (33%), Positives = 63/114 (55%), Gaps = 8/114 (7%)

Query: 19  DHVPVLLEKVIALLN-PAPGKVIL-DATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCG 74
           +H PVL ++V+        GK  + DAT G GG+S    K   N  +I LD+D +A+   
Sbjct: 3   EHYPVLKDEVVKFFTLIESGKEYILDATVGGGGHSYLILKNFPNRKIIGLDKDDYALKRA 62

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGVD---GVVFDLGVSSMQIDCGDRGF 125
           +E ++++K ++ L ++ F  L   + +  +D   GV+FD GVS  Q+   +RGF
Sbjct: 63  EEKLKEFKGRYILIKSAFKDLDKVLENLNIDKLAGVLFDFGVSHFQLKL-ERGF 115


>gi|325119263|emb|CBZ54817.1| putative S-adenosyl-methyltransferase mraW [Neospora caninum
           Liverpool]
          Length = 1044

 Score =  112 bits (282), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 43/126 (34%), Positives = 67/126 (53%), Gaps = 5/126 (3%)

Query: 141 GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA-PFQTTQDLSSLIQKTV 199
            + A+ VVN      L  I  + GEE  A  IA  IV+ R++    + T++L  +++   
Sbjct: 779 ALDAAQVVNGLPQAALASIFKLYGEEPLAELIAACIVRHRETRGTLRATEELREIVEGCC 838

Query: 200 YFSKNNRI-HPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258
            +     I    +R FQ   ++VN E+E L   L  AE+ LK GG L+++S+HSLEDRL+
Sbjct: 839 RYRNPQFIIKTCSRVFQ---MYVNQELEVLDLLLTHAERLLKPGGRLVILSYHSLEDRLI 895

Query: 259 KKFFAS 264
           K+    
Sbjct: 896 KQRLKR 901



 Score = 89.9 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCG 74
           +HVPV++++V+  L  A   V +D T G GG+  +  +     G  ++A+DRD  AV   
Sbjct: 402 EHVPVMVQEVLQYLITAKDGVYVDCTAGGGGHVEAIWRAVASEGGRLLAIDRDEEAVEAT 461

Query: 75  QETMRDYKEQ 84
           +  +R  + +
Sbjct: 462 RNRLRQLQAR 471



 Score = 36.7 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 9/17 (52%), Positives = 12/17 (70%)

Query: 300  VAFNRRSRSAKLRAGMR 316
            V  NRR+RSAK+R   +
Sbjct: 1016 VLRNRRARSAKMRVAAK 1032


>gi|213861638|ref|ZP_03386108.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
          Length = 88

 Score =  112 bits (282), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 41/89 (46%), Positives = 60/89 (67%), Gaps = 1/89 (1%)

Query: 167 KQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIE 226
           + A RIA AIV+R +  P   T++L+ ++       K+   HPATR+FQA+RI+VN+E+E
Sbjct: 1   RFAKRIARAIVERNREQPMTRTKELAEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELE 59

Query: 227 ELAQGLRSAEKALKAGGLLIVVSFHSLED 255
           E+ Q L+S+   L  GG L ++SFHSLED
Sbjct: 60  EIEQALKSSLNVLAPGGRLSIISFHSLED 88


>gi|312867849|ref|ZP_07728054.1| S-adenosyl-methyltransferase MraW [Streptococcus parasanguinis
           F0405]
 gi|311096604|gb|EFQ54843.1| S-adenosyl-methyltransferase MraW [Streptococcus parasanguinis
           F0405]
          Length = 84

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 40/82 (48%)

Query: 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVP 295
              L   G + V++FHSLEDRL K+ F   S   +        +      + + +K ++P
Sbjct: 1   MDLLAIDGRISVITFHSLEDRLTKQLFKEVSTVEVPKGLPFIPDDLKPKMELVNRKPILP 60

Query: 296 TQEDVAFNRRSRSAKLRAGMRT 317
           + E++  N RS SAKLR   + 
Sbjct: 61  SDEELEDNNRSHSAKLRVARKI 82


>gi|226328338|ref|ZP_03803856.1| hypothetical protein PROPEN_02232 [Proteus penneri ATCC 35198]
 gi|225203071|gb|EEG85425.1| hypothetical protein PROPEN_02232 [Proteus penneri ATCC 35198]
          Length = 89

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
          H  VLL++ +  LN  P  + +D TFG GG+SR           +IA+DRDP A++   E
Sbjct: 8  HTSVLLDEAVNGLNIKPSGIYIDGTFGRGGHSRLILSQLGEQGRLIAIDRDPQAIAVANE 67

Query: 77 TMRDYKEQFSLFQATFSQL 95
                 +FS+    F  L
Sbjct: 68 I---DDARFSIVHGPFQIL 83


>gi|56808162|ref|ZP_00365944.1| COG0275: Predicted S-adenosylmethionine-dependent methyltransferase
           involved in cell envelope biogenesis [Streptococcus
           pyogenes M49 591]
          Length = 95

 Score =  109 bits (272), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 48/94 (51%)

Query: 225 IEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV 284
           +    + ++ A + L   G + V++FHSLEDRL K+ F   S   +     +        
Sbjct: 1   MGAADEYIQDAMELLALDGRISVITFHSLEDRLTKQLFKEASTVDVPKGLPLIPEDMKPK 60

Query: 285 FQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318
           F+ +++K ++P+  ++  N+R+ SAKLR   +  
Sbjct: 61  FELVSRKPILPSHSELTANKRAHSAKLRVAKKIR 94


>gi|118594403|ref|ZP_01551750.1| S-adenosyl-methyltransferase MraW [Methylophilales bacterium
           HTCC2181]
 gi|118440181|gb|EAV46808.1| S-adenosyl-methyltransferase MraW [Methylophilales bacterium
           HTCC2181]
          Length = 98

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 6/92 (6%)

Query: 13  IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69
           +      H+PVLL + I  LN  P    LD TFG GG+S+   K       ++A+D+D  
Sbjct: 1   MSKENFTHIPVLLNESIDGLNINPAGTYLDCTFGRGGHSKEILKRLNQNGRLVAIDQDLA 60

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPD 101
           AV+ G++      ++F ++   FS + + V  
Sbjct: 61  AVAEGKKI---NDKRFDIYHGKFSSMDEIVKK 89


>gi|145627902|ref|ZP_01783703.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae 22.1-21]
 gi|144979677|gb|EDJ89336.1| S-adenosyl-methyltransferase MraW [Haemophilus influenzae 22.1-21]
          Length = 82

 Score =  106 bits (264), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 2/82 (2%)

Query: 238 ALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQS--ITKKVVVP 295
            L   G L ++SFHSLEDR+VK F   +S      + +          Q   I  K + P
Sbjct: 1   MLAPEGRLSIISFHSLEDRMVKHFMKKQSKGEDIPKGLPLREDQIQRNQKLRIIGKAIQP 60

Query: 296 TQEDVAFNRRSRSAKLRAGMRT 317
           +  ++  N RSRSA LR   R 
Sbjct: 61  SDAEIQANPRSRSAILRVAERI 82


>gi|167951237|ref|ZP_02538311.1| S-adenosyl-methyltransferase MraW [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 119

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 4/92 (4%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
            I  H PVLLE+ +  LN     + +D TFG GG+SR   K+      +I +D+DP A+ 
Sbjct: 3   EITTHRPVLLEEAVTALNITAEGIYIDGTFGRGGHSRRILKVLGERGRLIGIDKDPQAIV 62

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKGV 104
            G+E +     +F++ Q +F+ +     ++ V
Sbjct: 63  HGREQLGG-DARFTIVQQSFAMIAQVGTERQV 93


>gi|258615770|ref|ZP_05713540.1| S-adenosyl-methyltransferase MraW [Enterococcus faecium DO]
          Length = 82

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 5/80 (6%)

Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVS 72
              H  V+L++ +  LN  P  V +D T G  G+S           ++ A D+D  A+ 
Sbjct: 3  ETFQHYTVMLKETVDGLNIKPDGVYVDCTLGGAGHSEYLLSQLSSKGHLYAFDQDQKAID 62

Query: 73 CGQETMRDYKEQ--FSLFQA 90
            +  +  Y EQ   +  +A
Sbjct: 63 HAKLRLASYVEQGMVTFIKA 82


>gi|153864731|ref|ZP_01997531.1| Bacterial methyltransferase [Beggiatoa sp. SS]
 gi|152145773|gb|EDN72468.1| Bacterial methyltransferase [Beggiatoa sp. SS]
          Length = 95

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 4/88 (4%)

Query: 9  MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALD 65
          MS        +H PVLL +VI  LN       +D TFG GG++R+     +    V+ALD
Sbjct: 1  MSKPESLNASEHQPVLLSEVIHALNIHADGTYIDCTFGRGGHTRAILNHLEASGRVLALD 60

Query: 66 RDPFAVSCGQETMRDYKEQFSLFQATFS 93
           DP AV    + +    ++  +  + F+
Sbjct: 61 TDPQAVQ-AGQALSVSDDRLRIVHSAFA 87


>gi|159470611|ref|XP_001693450.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158282953|gb|EDP08704.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 74

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 34/80 (42%), Positives = 45/80 (56%), Gaps = 8/80 (10%)

Query: 239 LKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSI--TKKVVVPT 296
           L  GG L V+SFHSLEDRLVK  FA  +G         P + H      +   +K V+P+
Sbjct: 1   LAPGGRLAVISFHSLEDRLVKHAFARAAG------RPTPEDEHRTRVAVLVGNQKPVLPS 54

Query: 297 QEDVAFNRRSRSAKLRAGMR 316
           +E+ A N R+RSAKLR   +
Sbjct: 55  EEETARNPRARSAKLRVLQK 74


>gi|33866827|ref|NP_898386.1| hypothetical protein SYNW2297 [Synechococcus sp. WH 8102]
 gi|33639428|emb|CAE08812.1| conserved hypothetical protein [Synechococcus sp. WH 8102]
          Length = 83

 Score = 95.6 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 35/96 (36%), Positives = 49/96 (51%), Gaps = 17/96 (17%)

Query: 221 VNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNA 280
           +N+E+  L + L+ A   L+ GGL+ ++SFHSLEDR VK  F                  
Sbjct: 1   MNDELGVLDRLLQQAPDWLEPGGLVGIISFHSLEDRRVKTAF-----------------L 43

Query: 281 HPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
                + IT+K VV T+E+   N RSRSAK R   +
Sbjct: 44  RDERLERITRKPVVATEEEEEANPRSRSAKWRLARK 79


>gi|225159221|ref|ZP_03725523.1| S-adenosylmethionine-dependent methyltransferase involved in cell
           envelope biogenesis-like protein [Opitutaceae bacterium
           TAV2]
 gi|224802168|gb|EEG20438.1| S-adenosylmethionine-dependent methyltransferase involved in cell
           envelope biogenesis-like protein [Opitutaceae bacterium
           TAV2]
          Length = 125

 Score = 94.5 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 3/90 (3%)

Query: 16  TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSC 73
               H+ VLL+  + LL P  G   LD TFG GG++R+         V+ALDRDP A+  
Sbjct: 30  PAAGHISVLLQPTLELLAPRAGGRYLDCTFGGGGHTRALLNAAPDTRVVALDRDPAALPR 89

Query: 74  GQETMRDYK-EQFSLFQATFSQLQDYVPDK 102
                 +Y  ++F L    F +L +     
Sbjct: 90  AAALAAEYGSDRFQLIDRDFGRLAELAATH 119


>gi|330938026|gb|EGH41806.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv.
          pisi str. 1704B]
          Length = 76

 Score = 94.1 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 4/71 (5%)

Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQE 76
          H+ VLLE+ +  L        LD TFG GG+SR           ++  D+DP A++ GQ 
Sbjct: 7  HITVLLEEAVEALAVRADGCYLDGTFGRGGHSRLILSQLGPDGRLLGFDKDPQAIATGQA 66

Query: 77 TMRDYKEQFSL 87
             +   +F L
Sbjct: 67 LAAEAG-RFVL 76


>gi|218508136|ref|ZP_03506014.1| S-adenosyl-methyltransferase MraW [Rhizobium etli Brasil 5]
          Length = 71

 Score = 92.2 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/53 (64%), Positives = 43/53 (81%)

Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVS 72
          H+PVLLE+V+A L PAPGK+ILD TFGAGGY+ +    G+ VIALDRDP A++
Sbjct: 19 HIPVLLEEVLAALAPAPGKLILDGTFGAGGYTSAILAAGAEVIALDRDPTAIA 71


>gi|85057933|ref|YP_456849.1| hypothetical protein AYWB_653 [Aster yellows witches'-broom
          phytoplasma AYWB]
 gi|84790038|gb|ABC65770.1| conserved hypothetical protein [Aster yellows witches'-broom
          phytoplasma AYWB]
          Length = 83

 Score = 91.8 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 36/83 (43%), Gaps = 3/83 (3%)

Query: 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFA 70
          ++     H+ VL ++ I  L   P  + +DAT G  G++     +     + + D+D  A
Sbjct: 1  MNKQNFHHISVLKKEAIDFLKIKPEGIYVDATLGQCGHTIEIANLLQQGFLYSFDQDVEA 60

Query: 71 VSCGQETMRDYKEQFSLFQATFS 93
           +  ++T+  +     +  + F 
Sbjct: 61 CTNAKKTLSPHLP-IEIIHSIFR 82


>gi|260889236|ref|ZP_05900499.1| S-adenosyl-methyltransferase MraW [Leptotrichia hofstadii F0254]
 gi|260861296|gb|EEX75796.1| S-adenosyl-methyltransferase MraW [Leptotrichia hofstadii F0254]
          Length = 78

 Score = 88.7 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 3/63 (4%)

Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQE 76
          H PVL ++VI  +      V +D T G GG++    +     S V+A+D+D  A+   ++
Sbjct: 4  HKPVLFDEVIDNIITKKDAVYVDCTLGGGGHTEGILENSSENSKVVAIDQDTEAIEFAKK 63

Query: 77 TMR 79
           ++
Sbjct: 64 DLK 66


>gi|169841872|ref|ZP_02874981.1| Methyltransferase [candidate division TM7 single-cell isolate TM7a]
          Length = 78

 Score = 87.9 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 1/71 (1%)

Query: 103 GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILG 161
            VD ++ D+GVSS Q+D   RGFS++    LDMRM  S  ISA +VVN  + K++  I+ 
Sbjct: 8   KVDRILMDIGVSSNQLDNAKRGFSYRFEARLDMRMDSSLKISAYEVVNDFSEKEIADIIY 67

Query: 162 ILGEEKQASRI 172
             GEE ++ +I
Sbjct: 68  KYGEEPKSRKI 78


>gi|222831815|gb|EEE70292.1| predicted protein [Populus trichocarpa]
          Length = 81

 Score = 87.5 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 6/81 (7%)

Query: 10 SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDR 66
          + +   T   H  VLL++ +  L   P    +D TFG GG+SR+          ++A D+
Sbjct: 4  TESPGTTTLRHRTVLLDEAVDALVWRPDGAYVDGTFGRGGHSRAVLARLGPAGTLVAFDK 63

Query: 67 DPFAVSCGQETMRDYKEQFSL 87
          DP A++           +FS+
Sbjct: 64 DPAAIAEAGTI---KDARFSI 81


>gi|225389939|ref|ZP_03759663.1| hypothetical protein CLOSTASPAR_03689 [Clostridium asparagiforme
           DSM 15981]
 gi|225044001|gb|EEG54247.1| hypothetical protein CLOSTASPAR_03689 [Clostridium asparagiforme
           DSM 15981]
          Length = 64

 Score = 87.2 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 255 DRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           DR+VKK F       +      +      +  + IT+K ++P++E++  N RS+SAKLR 
Sbjct: 1   DRIVKKRFRESEHPCICPPDFPVCVCGRVSRGRVITRKPILPSEEELEVNSRSKSAKLRV 60

Query: 314 GMR 316
             R
Sbjct: 61  FER 63


>gi|169839617|ref|ZP_02872805.1| S-adenosyl-methyltransferase [candidate division TM7 single-cell
           isolate TM7a]
          Length = 67

 Score = 85.2 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 1/66 (1%)

Query: 254 EDRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLR 312
           EDR+VK+ F          +   I      ++ + IT+K +V    ++  N R+ SAKLR
Sbjct: 2   EDRIVKEKFREYEDPCTCPKDIPICVCNKKSLGKIITRKPIVAKTSELEENNRAHSAKLR 61

Query: 313 AGMRTV 318
              R+ 
Sbjct: 62  IFERSE 67


>gi|254469046|ref|ZP_05082452.1| S-adenosyl-methyltransferase MraW [beta proteobacterium KB13]
 gi|207087856|gb|EDZ65139.1| S-adenosyl-methyltransferase MraW [beta proteobacterium KB13]
          Length = 96

 Score = 81.4 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 40/92 (43%), Gaps = 6/92 (6%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQE 76
           H P++  +V   L        LD TFG GG+S+      +    +IA+D+D  A++  + 
Sbjct: 6   HFPIMRYEVTKHLIIDKNGKYLDCTFGRGGHSKIILDSLEQKGELIAIDKDHEAINSAKS 65

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVV 108
                 E+F +  ++       +  K + G +
Sbjct: 66  I---QDERFEIHHSSILNFAKSLKKKVLMGYL 94


>gi|13537274|dbj|BAB40624.1| hypothetical protein [Vibrio natriegens]
 gi|13537277|dbj|BAB40626.1| hypothetical protein [Vibrio harveyi]
 gi|13537280|dbj|BAB40628.1| hypothetical protein [Vibrio harveyi]
          Length = 51

 Score = 81.0 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 21/45 (46%)

Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN 60
              H+ VLL + I  L   P  + +D TFG GG+SR+       
Sbjct: 3  ETFQHISVLLNESIDGLAIKPDGIYIDGTFGRGGHSRTILSKLGE 47


>gi|13537271|dbj|BAB40622.1| hypothetical protein [Vibrio alginolyticus]
          Length = 51

 Score = 81.0 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 21/45 (46%)

Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN 60
              H+ VLL + I  L   P  V +D TFG GG+SR+       
Sbjct: 3  ETFQHISVLLNESIDGLAIKPDGVYIDGTFGRGGHSRTILSKLGE 47


>gi|289809859|ref|ZP_06540488.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 73

 Score = 79.1 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 7/73 (9%)

Query: 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF-----QSITKKVVVPTQEDVAFNR 304
           FHSLEDR+VK+F   +S        +  + A          +++ K  ++P +++VA N 
Sbjct: 1   FHSLEDRIVKRFMREQSRGPQVPAGLPMTEAQLKKLGGRELRALGK--LMPGEKEVAENP 58

Query: 305 RSRSAKLRAGMRT 317
           R+RS+ LR   RT
Sbjct: 59  RARSSVLRIAERT 71


>gi|237732706|ref|ZP_04563187.1| predicted protein [Mollicutes bacterium D7]
 gi|229384222|gb|EEO34313.1| predicted protein [Coprobacillus sp. D7]
          Length = 117

 Score = 76.0 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 35/67 (52%), Gaps = 3/67 (4%)

Query: 5   SCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNV 61
           + + +       +G H+ +++++++  L+   G++ LD T G GG++    +      ++
Sbjct: 50  TIEKVIKKGSTPVGMHLSIMVDEILEFLDIQEGQIGLDCTLGYGGHTLKMLECLNYTGHM 109

Query: 62  IALDRDP 68
            ALD DP
Sbjct: 110 YALDIDP 116


>gi|2463559|dbj|BAA22552.1| unnamed protein product [Staphylococcus aureus]
          Length = 65

 Score = 74.8 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 255 DRLVKKFFASRSGKVMAVRH-MIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           DRL K+ F          R   +   A+    + + +K +  T+ED+  N R+RSAKLR 
Sbjct: 1   DRLCKQVFQEYEKGPEVPRGLPVIPEAYTPKLKRVNRKPITATEEDLDDNNRARSAKLRV 60

Query: 314 GM 315
             
Sbjct: 61  AE 62


>gi|207111120|ref|ZP_03245282.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 65

 Score = 66.7 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 34/67 (50%), Positives = 44/67 (65%), Gaps = 3/67 (4%)

Query: 163 LGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVN 222
            GE K+  +IAH I +RR   PF+  +DLS  +     FSKN +IHPAT  FQA+RI VN
Sbjct: 1   YGEIKEYKKIAHKIAERRAKKPFKDAKDLSEFLSS---FSKNKKIHPATLVFQAVRIEVN 57

Query: 223 NEIEELA 229
           +E+EEL 
Sbjct: 58  SELEELK 64


>gi|213026454|ref|ZP_03340901.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 58

 Score = 66.4 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 27/59 (45%), Positives = 41/59 (69%), Gaps = 1/59 (1%)

Query: 171 RIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELA 229
           RIAHAIV+R +  P   T++L+ ++       K+   HPATR+FQA+RI+VN+E+EE+ 
Sbjct: 1   RIAHAIVERNREQPMTRTKELAEVVAAATPV-KDKFKHPATRTFQAVRIWVNSELEEIE 58


>gi|309807739|ref|ZP_07701673.1| conserved hypothetical protein [Lactobacillus iners LactinV 01V1-a]
 gi|308168999|gb|EFO71083.1| conserved hypothetical protein [Lactobacillus iners LactinV 01V1-a]
          Length = 44

 Score = 64.4 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 22/39 (56%)

Query: 278 SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
            ++     + I++K +V T +++  N RS SAKLR   +
Sbjct: 5   PDSLKPTLKIISRKPIVATDKELEENNRSHSAKLRVAEK 43


>gi|309804772|ref|ZP_07698836.1| conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c]
 gi|309809951|ref|ZP_07703799.1| conserved hypothetical protein [Lactobacillus iners SPIN 2503V10-D]
 gi|308165882|gb|EFO68101.1| conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c]
 gi|308169739|gb|EFO71784.1| conserved hypothetical protein [Lactobacillus iners SPIN 2503V10-D]
          Length = 44

 Score = 62.5 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 22/39 (56%)

Query: 278 SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
            ++     + I++K +V T +++  N RS SAKLR   +
Sbjct: 5   PDSLKPTLKIISRKPIVATNKELEENNRSHSAKLRVAEK 43


>gi|2739245|emb|CAA05400.1| hypothetical protein [Campylobacter jejuni]
          Length = 44

 Score = 62.5 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 19/41 (46%)

Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS 59
           H+PVLL +V  +         LD T G GG+S +  K   
Sbjct: 4  PHIPVLLNEVQKIFKNLKTGYFLDCTLGFGGHSEALLKNHP 44


>gi|309806340|ref|ZP_07700353.1| conserved hypothetical protein [Lactobacillus iners LactinV 03V1-b]
 gi|308167324|gb|EFO69490.1| conserved hypothetical protein [Lactobacillus iners LactinV 03V1-b]
          Length = 44

 Score = 62.1 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 22/39 (56%)

Query: 278 SNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
            ++     + I++K +V T +++  N RS SAKLR   +
Sbjct: 5   PDSLKPTLKIISRKPIVATNKELEANNRSHSAKLRVAEK 43


>gi|260588799|ref|ZP_05854712.1| putative rRNA methylase [Blautia hansenii DSM 20583]
 gi|331084442|ref|ZP_08333545.1| hypothetical protein HMPREF0992_02469 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260540882|gb|EEX21451.1| putative rRNA methylase [Blautia hansenii DSM 20583]
 gi|330401538|gb|EGG81122.1| hypothetical protein HMPREF0992_02469 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 188

 Score = 61.3 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 5/87 (5%)

Query: 32  LNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDYK--EQFS 86
           L   P  + +DAT G G  +   C++      V+A D    A+ C  + ++++    +  
Sbjct: 16  LQVNPNGLYIDATMGNGYDTLFLCELAGESGKVLAFDVQEKAIMCTTKLLKEHNVENRAK 75

Query: 87  LFQATFSQLQDYVPDKGVDGVVFDLGV 113
           L+  +   + +Y     VDG+ F+ G 
Sbjct: 76  LYLDSHENMDEYAEAGSVDGIYFNFGY 102


>gi|330950234|gb|EGH50494.1| hypothetical protein PSYCIT7_02272 [Pseudomonas syringae Cit 7]
          Length = 41

 Score = 61.3 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 16/30 (53%)

Query: 20 HVPVLLEKVIALLNPAPGKVILDATFGAGG 49
          H+ VLLE+ +  L        LD TFG GG
Sbjct: 9  HITVLLEEAVEALAVRADGCYLDGTFGRGG 38


>gi|255017463|ref|ZP_05289589.1| S-adenosyl-methyltransferase MraW [Listeria monocytogenes FSL
           F2-515]
          Length = 33

 Score = 61.0 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 22/30 (73%)

Query: 289 TKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318
           T+K +VP++E++  N R+RSAKLR   + +
Sbjct: 3   TRKPIVPSEEELEQNNRARSAKLRVIEKII 32


>gi|317496762|ref|ZP_07955092.1| hypothetical protein HMPREF0996_00071 [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316895774|gb|EFV17926.1| hypothetical protein HMPREF0996_00071 [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 184

 Score = 59.8 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 3/83 (3%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDYKEQFSLFQA 90
              G   +DAT G GG +   C        V A D    A+   +E +  +K    L   
Sbjct: 17  IKEGDCCIDATMGKGGDTYYLCSKTGESGKVYAFDVQADALRQTREKLDKHKMNAELILD 76

Query: 91  TFSQLQDYVPDKGVDGVVFDLGV 113
               +++YV +  V  ++F+LG 
Sbjct: 77  GHEHMKEYVKEMAVSCIMFNLGY 99


>gi|291559257|emb|CBL38057.1| Predicted S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [butyrate-producing
           bacterium SSC/2]
          Length = 180

 Score = 59.8 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 3/83 (3%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDYKEQFSLFQA 90
              G   +DAT G GG +   C        V A D    A+   +E +  +K    L   
Sbjct: 13  IKEGDCCIDATMGKGGDTYYLCSKTGESGKVYAFDVQADALRQTREKLDKHKMNAELILD 72

Query: 91  TFSQLQDYVPDKGVDGVVFDLGV 113
               +++YV +  V  ++F+LG 
Sbjct: 73  GHEHMKEYVKEMAVSCIMFNLGY 95


>gi|167767427|ref|ZP_02439480.1| hypothetical protein CLOSS21_01946 [Clostridium sp. SS2/1]
 gi|167711402|gb|EDS21981.1| hypothetical protein CLOSS21_01946 [Clostridium sp. SS2/1]
          Length = 184

 Score = 59.8 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 3/83 (3%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDYKEQFSLFQA 90
              G   +DAT G GG +   C        V A D    A+   +E +  +K    L   
Sbjct: 17  IKEGDCCIDATMGKGGDTYYLCSKTGESGKVYAFDVQADALRQTREKLDKHKMNAELILD 76

Query: 91  TFSQLQDYVPDKGVDGVVFDLGV 113
               +++YV +  V  ++F+LG 
Sbjct: 77  GHEHMKEYVKEMAVSCIMFNLGY 99


>gi|257870816|ref|ZP_05650469.1| SAM-dependent methyltransferase [Enterococcus gallinarum EG2]
 gi|257804980|gb|EEV33802.1| SAM-dependent methyltransferase [Enterococcus gallinarum EG2]
          Length = 186

 Score = 57.9 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 42/100 (42%), Gaps = 15/100 (15%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQ 75
           H   LL++V+      PG+ ++DAT G  G+              V A D    AV+  +
Sbjct: 5   HT--LLQEVV-----KPGQTVVDATMGN-GHDTELLATLVGPEGKVYAFDIQEQAVTTTK 56

Query: 76  ETM--RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
           E +  +    Q  L       + DYVPD  V   +F+LG 
Sbjct: 57  ERLLAKGLLPQVELIHQGHETVADYVPD-AVHAAIFNLGY 95


>gi|148828290|ref|YP_001293043.1| S-adenosyl-methyltransferase [Haemophilus influenzae PittGG]
 gi|148719532|gb|ABR00660.1| S-adenosyl-methyltransferase [Haemophilus influenzae PittGG]
          Length = 43

 Score = 57.9 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 287 SITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317
            I  K + P+  ++  N RSRSA LR   R 
Sbjct: 13  RIIGKAIQPSDAEIQVNPRSRSAILRVAERI 43


>gi|311069541|ref|YP_003974464.1| putative RNA methylase [Bacillus atrophaeus 1942]
 gi|310870058|gb|ADP33533.1| putative RNA methylase [Bacillus atrophaeus 1942]
          Length = 194

 Score = 56.7 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 45/96 (46%), Gaps = 10/96 (10%)

Query: 26  EKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETM-RD 80
           ++++ +     G +++DAT G  G+   F         +V A D    A++  +E +  +
Sbjct: 11  KELLQMAADK-GSIVVDATMGN-GHDTLFLAKLVGENGHVYAFDIQESALAATRERLGEE 68

Query: 81  YKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGV 113
           Y  + +LF  +  ++ + +P   D  V   +F+LG 
Sbjct: 69  YGPRVTLFHKSHDKIAESLPPEADGRVAAAIFNLGY 104


>gi|213416741|ref|ZP_03349885.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
          enterica serovar Typhi str. E01-6750]
          Length = 32

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 19 DHVPVLLEKVIALLNPAPGKVILDATF 45
           H  VLL++ +  LN  P  + +D TF
Sbjct: 6  KHTTVLLDEAVNGLNIRPDGIYIDGTF 32


>gi|225574953|ref|ZP_03783563.1| hypothetical protein RUMHYD_03032 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037800|gb|EEG48046.1| hypothetical protein RUMHYD_03032 [Blautia hydrogenotrophica DSM
           10507]
          Length = 187

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 5/86 (5%)

Query: 33  NPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMRDYK--EQFSL 87
              PG + +DAT G G  ++  C+    G  V+A D    A+   +E +R     E + L
Sbjct: 17  QIRPGDLCIDATMGNGKDTQVLCELTGKGGKVLAFDIQECALQATRERLRRAGVPENYEL 76

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGV 113
           +  +   + +Y  +  V  +VF+LG 
Sbjct: 77  YCRSHVHMDEYAKEGSVSCIVFNLGY 102


>gi|213022917|ref|ZP_03337364.1| S-adenosyl-methyltransferase MraW [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 65

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 7/64 (10%)

Query: 259 KKFFASRSGKVMAVRHMIPSNAHPAVF-----QSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           K+F   +S        +  + A          +++ K  ++P +++VA N R+RS+ LR 
Sbjct: 2   KRFMREQSRGPQVPAGLPMTEAQLKKLGGRELRALGK--LMPGEKEVAENPRARSSVLRI 59

Query: 314 GMRT 317
             RT
Sbjct: 60  AERT 63


>gi|313884623|ref|ZP_07818381.1| putative rRNA methylase [Eremococcus coleocola ACS-139-V-Col8]
 gi|312620133|gb|EFR31564.1| putative rRNA methylase [Eremococcus coleocola ACS-139-V-Col8]
          Length = 194

 Score = 55.2 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 49/113 (43%), Gaps = 17/113 (15%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGY-SRSFCKM---GSNVIAL 64
           M SA+H++   H   LL  +I      P    +DAT G  G+ +    +       V+A 
Sbjct: 1   MQSALHYS---HQ--LLTALIDRF---PKGTFVDATLGN-GHDTAFILQKPNFHGQVLAF 51

Query: 65  DRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYV-PDKGVDGVVFDLGV 113
           D    A++  Q+ +        ++ L   + + L+ ++ P + +   +F+LG 
Sbjct: 52  DIQDQALTNSQDRLNKLGLDPSRYQLIHDSHANLEAHLTPGQKLQAAIFNLGY 104


>gi|255635058|gb|ACU17887.1| unknown [Glycine max]
          Length = 140

 Score = 54.4 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 23/45 (51%)

Query: 15  HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS 59
            T   HVPV+L +V+ + + +     +D T GA G+S +  K   
Sbjct: 80  DTKFSHVPVMLGEVLDVFSNSTLTSFVDCTLGAAGHSTASLKYFG 124


>gi|220932037|ref|YP_002508945.1| putative rRNA methylase [Halothermothrix orenii H 168]
 gi|219993347|gb|ACL69950.1| putative rRNA methylase [Halothermothrix orenii H 168]
          Length = 196

 Score = 54.0 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 7/86 (8%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK--EQFSL 87
              G  ++DAT G  G+   F          V + D    A+   +  +++    E+  L
Sbjct: 26  VKKGSTVIDATAGN-GHDTCFLASLVGEKGQVYSFDIQKKAIEKTKALLKEQNLEERVYL 84

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGV 113
                  L +Y+  + +DGV+F+LG 
Sbjct: 85  IHDGHENLDNYIKGQFIDGVIFNLGY 110


>gi|291543851|emb|CBL16960.1| Predicted S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [Ruminococcus sp. 18P13]
          Length = 190

 Score = 54.0 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 41/106 (38%), Gaps = 20/106 (18%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFC----KMGSNVIALDRDPF 69
           H  I +HV              PG + +DAT G  G+  +          +V A D    
Sbjct: 13  HKFIREHV-------------KPGDLCIDATAGR-GHDTALLCGLVGETGHVTAFDIQSD 58

Query: 70  AVSCGQETMRD--YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
           A++     + +  Y ++ ++ Q + S + +Y     +  + F+ G 
Sbjct: 59  AIASTNARLAELGYTDRATVIQGSHSTMGEYAQPGTISCITFNFGW 104


>gi|330950232|gb|EGH50492.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae Cit 7]
          Length = 49

 Score = 53.6 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 1/45 (2%)

Query: 273 RHMIPSNAHPAVFQS-ITKKVVVPTQEDVAFNRRSRSAKLRAGMR 316
              +P    P   +  I  K    +  +   N RSRSA +R   +
Sbjct: 3   PRNLPIQFKPFEPKIKIHGKAQFASDVETKANPRSRSAVMRVAEK 47


>gi|23099763|ref|NP_693229.1| hypothetical protein OB2308 [Oceanobacillus iheyensis HTE831]
 gi|22777993|dbj|BAC14264.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 191

 Score = 53.6 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 9/94 (9%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMRD 80
           LLE+ I+      G+V++DAT G G  +    +      +V A D    A+   ++ +  
Sbjct: 18  LLEESIS-----EGEVVIDATCGNGNDTLFLSRVVGKSGHVYAFDIQQQAIQNTKQALEK 72

Query: 81  Y-KEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
           Y     +L   + + ++DYV    + G +F+LG 
Sbjct: 73  YHNNNVTLIHGSHALIEDYVQHDVIGGAIFNLGY 106


>gi|257866928|ref|ZP_05646581.1| SAM-dependent methyltransferase [Enterococcus casseliflavus EC30]
 gi|257873261|ref|ZP_05652914.1| SAM-dependent methyltransferase [Enterococcus casseliflavus EC10]
 gi|257800984|gb|EEV29914.1| SAM-dependent methyltransferase [Enterococcus casseliflavus EC30]
 gi|257807425|gb|EEV36247.1| SAM-dependent methyltransferase [Enterococcus casseliflavus EC10]
          Length = 187

 Score = 53.6 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 41/107 (38%), Gaps = 14/107 (13%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H   LL++V+      PG+  +DAT G G  +     +      V A D    A+   ++
Sbjct: 5   HT--LLKEVL-----QPGQTAVDATMGNGFDTELLASLVGPTGQVFAFDIQEQALQATKK 57

Query: 77  TMRDYK--EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCG 121
            + + +   Q  L       L + V    V   +F+LG    Q D  
Sbjct: 58  RLAEKELLAQVQLIHQGHETLAEVVSGP-VHAAIFNLGYL-PQGDKA 102


>gi|225181671|ref|ZP_03735111.1| putative rRNA methylase [Dethiobacter alkaliphilus AHT 1]
 gi|225167652|gb|EEG76463.1| putative rRNA methylase [Dethiobacter alkaliphilus AHT 1]
          Length = 184

 Score = 53.3 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 11/91 (12%)

Query: 37  GKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQA 90
           G V +DAT G  G+   F       G  V+A D    AV   +E + +    ++  L+  
Sbjct: 19  GGVAVDATCGN-GHDTLFLAQQVGPGGTVLAFDIQQQAVDATKERLAEAALLDRVQLYTD 77

Query: 91  TFSQLQDYVPDKGVDGVVFDLGV---SSMQI 118
           + + L DYV   G+D ++F+LG    S  ++
Sbjct: 78  SHANLDDYV-QSGIDAMMFNLGYLPGSDHEV 107


>gi|269962646|ref|ZP_06176991.1| sun protein [Vibrio harveyi 1DA3]
 gi|269832569|gb|EEZ86683.1| sun protein [Vibrio harveyi 1DA3]
          Length = 427

 Score = 53.3 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85
            I  L P  G++ILD     GG +    +   GS V+A+D D   +    E ++    Q 
Sbjct: 235 SINYLEPKDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKRLNLQA 294

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            +        Q++   +  D ++ D   S
Sbjct: 295 KVVCGDARNPQEWWQGEQFDRILLDAPCS 323


>gi|317471246|ref|ZP_07930611.1| hypothetical protein HMPREF1011_00959 [Anaerostipes sp. 3_2_56FAA]
 gi|316901293|gb|EFV23242.1| hypothetical protein HMPREF1011_00959 [Anaerostipes sp. 3_2_56FAA]
          Length = 183

 Score = 53.3 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 30/80 (37%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFS 93
              G + +DAT G GG +   C +   VI  +    A+    + +        L   +  
Sbjct: 17  IRQGDLCIDATVGNGGDTEYLCGLTDRVIGFEIQEEALLNTGKRLELKGYHPELILDSHE 76

Query: 94  QLQDYVPDKGVDGVVFDLGV 113
            +  Y     V  ++F+LG 
Sbjct: 77  NMDRYAEKGTVQAILFNLGY 96


>gi|163803318|ref|ZP_02197196.1| methionyl-tRNA formyltransferase [Vibrio sp. AND4]
 gi|159172888|gb|EDP57727.1| methionyl-tRNA formyltransferase [Vibrio sp. AND4]
          Length = 427

 Score = 53.3 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85
            I  L P  G++ILD     GG +    +   GS V+A+D D   +    E ++    Q 
Sbjct: 235 SINYLEPKDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKRLNLQA 294

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            +        Q++   +  D ++ D   S
Sbjct: 295 KVVCGDARHPQEWWQGEQFDRILLDAPCS 323


>gi|167746441|ref|ZP_02418568.1| hypothetical protein ANACAC_01151 [Anaerostipes caccae DSM 14662]
 gi|167653401|gb|EDR97530.1| hypothetical protein ANACAC_01151 [Anaerostipes caccae DSM 14662]
          Length = 190

 Score = 53.3 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 30/80 (37%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFS 93
              G + +DAT G GG +   C +   VI  +    A+    + +        L   +  
Sbjct: 24  IRQGDLCIDATVGNGGDTEYLCGLTDRVIGFEIQEEALLNTGKRLELKGYHPELILDSHE 83

Query: 94  QLQDYVPDKGVDGVVFDLGV 113
            +  Y     V  ++F+LG 
Sbjct: 84  NMDRYAEKGTVQAILFNLGY 103


>gi|153834294|ref|ZP_01986961.1| ribosomal RNA small subunit methyltransferase B [Vibrio harveyi
           HY01]
 gi|148869302|gb|EDL68316.1| ribosomal RNA small subunit methyltransferase B [Vibrio harveyi
           HY01]
          Length = 427

 Score = 53.3 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85
            I  L P  G++ILD     GG +    +   GS V+A+D D   +    E ++    Q 
Sbjct: 235 SINYLEPKDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKRLNLQA 294

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            +        Q++   +  D ++ D   S
Sbjct: 295 KVVCGDARHPQEWWQGEQFDRILLDAPCS 323


>gi|156972728|ref|YP_001443635.1| cytosine-C5-methylase [Vibrio harveyi ATCC BAA-1116]
 gi|156524322|gb|ABU69408.1| hypothetical protein VIBHAR_00393 [Vibrio harveyi ATCC BAA-1116]
          Length = 427

 Score = 53.3 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85
            I  L P  G++ILD     GG +    +   GS V+A+D D   +    E ++    Q 
Sbjct: 235 SINYLEPKDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKRLNLQA 294

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            +        Q++   +  D ++ D   S
Sbjct: 295 KVVCGDARHPQEWWQGEQFDRILLDAPCS 323


>gi|3288669|dbj|BAA31227.1| Fmv [Vibrio alginolyticus]
          Length = 225

 Score = 52.9 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85
            I  L P  G++ILD     GG +    +   GS V+A+D D   +    E ++    Q 
Sbjct: 33  SINYLKPQDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKRLNLQA 92

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            +        Q++   +  D ++ D   S
Sbjct: 93  KVVCGDARNPQEWWQGEQFDRILLDAPCS 121


>gi|328471169|gb|EGF42071.1| 16S rRNA methyltransferase B [Vibrio parahaemolyticus 10329]
          Length = 427

 Score = 52.9 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85
            I  L P  G++ILD     GG +    +   GS V+A+D D   +    E ++    Q 
Sbjct: 235 SINYLKPQDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKRLNLQA 294

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            +        Q++   +  D ++ D   S
Sbjct: 295 KVVCGDARNPQEWWQGEQFDRILLDAPCS 323


>gi|153837662|ref|ZP_01990329.1| ribosomal RNA small subunit methyltransferase B [Vibrio
           parahaemolyticus AQ3810]
 gi|149748952|gb|EDM59779.1| ribosomal RNA small subunit methyltransferase B [Vibrio
           parahaemolyticus AQ3810]
          Length = 427

 Score = 52.9 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85
            I  L P  G++ILD     GG +    +   GS V+A+D D   +    E ++    Q 
Sbjct: 235 SINYLKPQDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKRLNLQA 294

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            +        Q++   +  D ++ D   S
Sbjct: 295 KVVCGDARNPQEWWQGEQFDRILLDAPCS 323


>gi|326407897|gb|ADZ64968.1| SAM-dependent methyltransferase [Lactococcus lactis subsp. lactis
           CV56]
          Length = 196

 Score = 52.9 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 3/75 (4%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFS 93
                V++DAT G G  ++   ++G+NV A D    A++  ++ + D   +  +F+   S
Sbjct: 16  IKTNDVVVDATMGNGYDTQFLAELGANVYAFDVQEEALNATEKRLDDAGIKNQIFEKNLS 75

Query: 94  QLQDYVPDKGVDGVV 108
            L   + +  V+ V+
Sbjct: 76  NL---LTEPSVNLVL 87


>gi|281492941|ref|YP_003354921.1| SAM-dependent methyltransferase [Lactococcus lactis subsp. lactis
           KF147]
 gi|281376593|gb|ADA66079.1| SAM-dependent methyltransferase [Lactococcus lactis subsp. lactis
           KF147]
          Length = 196

 Score = 52.9 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 3/75 (4%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFS 93
                V++DAT G G  ++   ++G+NV A D    A++  ++ + D   +  +F+   S
Sbjct: 16  IKTNDVVVDATMGNGYDTQFLAELGANVYAFDVQEEALNATEKRLDDAGIKNQIFEKNLS 75

Query: 94  QLQDYVPDKGVDGVV 108
            L   + +  V+ V+
Sbjct: 76  NL---LTEPSVNLVL 87


>gi|269967001|ref|ZP_06181071.1| sun protein [Vibrio alginolyticus 40B]
 gi|269828395|gb|EEZ82659.1| sun protein [Vibrio alginolyticus 40B]
          Length = 427

 Score = 52.9 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85
            I  L P  G++ILD     GG +    +   GS V+A+D D   +    E ++    Q 
Sbjct: 235 SINYLKPQDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKRLNLQA 294

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            +        Q++   +  D ++ D   S
Sbjct: 295 KVVCGDARNPQEWWQGEQFDRILLDAPCS 323


>gi|260901337|ref|ZP_05909732.1| ribosomal RNA small subunit methyltransferase B [Vibrio
           parahaemolyticus AQ4037]
 gi|308109871|gb|EFO47411.1| ribosomal RNA small subunit methyltransferase B [Vibrio
           parahaemolyticus AQ4037]
          Length = 427

 Score = 52.9 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85
            I  L P  G++ILD     GG +    +   GS V+A+D D   +    E ++    Q 
Sbjct: 235 SINYLKPQDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKRLNLQA 294

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            +        Q++   +  D ++ D   S
Sbjct: 295 KVVCGDARNPQEWWQGEQFDRILLDAPCS 323


>gi|91226301|ref|ZP_01261141.1| Sun protein [Vibrio alginolyticus 12G01]
 gi|91189312|gb|EAS75591.1| Sun protein [Vibrio alginolyticus 12G01]
          Length = 427

 Score = 52.9 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85
            I  L P  G++ILD     GG +    +   GS V+A+D D   +    E ++    Q 
Sbjct: 235 SINYLKPQDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKRLNLQA 294

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            +        Q++   +  D ++ D   S
Sbjct: 295 KVVCGDARNPQEWWQGEQFDRILLDAPCS 323


>gi|28899818|ref|NP_799423.1| Sun protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|260362016|ref|ZP_05775021.1| ribosomal RNA small subunit methyltransferase B [Vibrio
           parahaemolyticus K5030]
 gi|260876497|ref|ZP_05888852.1| ribosomal RNA small subunit methyltransferase B [Vibrio
           parahaemolyticus AN-5034]
 gi|260897446|ref|ZP_05905942.1| ribosomal RNA small subunit methyltransferase B [Vibrio
           parahaemolyticus Peru-466]
 gi|46396865|sp|Q87KD3|RSMB_VIBPA RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|28808070|dbj|BAC61307.1| Sun protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|308087890|gb|EFO37585.1| ribosomal RNA small subunit methyltransferase B [Vibrio
           parahaemolyticus Peru-466]
 gi|308090396|gb|EFO40091.1| ribosomal RNA small subunit methyltransferase B [Vibrio
           parahaemolyticus AN-5034]
 gi|308114191|gb|EFO51731.1| ribosomal RNA small subunit methyltransferase B [Vibrio
           parahaemolyticus K5030]
          Length = 427

 Score = 52.9 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85
            I  L P  G++ILD     GG +    +   GS V+A+D D   +    E ++    Q 
Sbjct: 235 SINYLKPQDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKRLNLQA 294

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            +        Q++   +  D ++ D   S
Sbjct: 295 KVVCGDARNPQEWWQGEQFDRILLDAPCS 323


>gi|254229997|ref|ZP_04923398.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. Ex25]
 gi|262392829|ref|YP_003284683.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. Ex25]
 gi|151937499|gb|EDN56356.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. Ex25]
 gi|262336423|gb|ACY50218.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. Ex25]
          Length = 427

 Score = 52.9 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85
            I  L P  G++ILD     GG +    +   GS V+A+D D   +    E ++    Q 
Sbjct: 235 SINYLKPQDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKRLNLQA 294

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            +        Q++   +  D ++ D   S
Sbjct: 295 KVVCGDARNPQEWWQGEQFDRILLDAPCS 323


>gi|269929255|ref|YP_003321576.1| methyltransferase type 11 [Sphaerobacter thermophilus DSM 20745]
 gi|269788612|gb|ACZ40754.1| Methyltransferase type 11 [Sphaerobacter thermophilus DSM 20745]
          Length = 258

 Score = 52.5 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 72/226 (31%), Gaps = 36/226 (15%)

Query: 29  IALLNPAPGKVILDATFGAG-GY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFS 86
           I LL P PG+ ILD   G G G+ +R+    G++V ++DRDP  ++  +    D   +  
Sbjct: 32  IDLLAPQPGERILD--LGCGTGHLTRAIADHGAHVTSIDRDPAMIAHARANYPDLPFEV- 88

Query: 87  LFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASD 146
                        P+   D V                 FS   +  L       G +AS 
Sbjct: 89  ------GDAAHLAPEHPFDAV-----------------FS---NAVLHWISDAEGAAASI 122

Query: 147 VVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNR 206
                    L    G  G  K         V+     P +T     S+ +  V   + + 
Sbjct: 123 RRALRPGGRLVAEFGGRGNVKVIVDAVADAVEAAGHTPVRTPWYFPSIGEYAVVL-ERHG 181

Query: 207 IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG----GLLIVV 248
           + P   +       ++   + L   L      L AG        V+
Sbjct: 182 LEPIWMALIDRPTPLDGGADGLRLWLTMFGDRLLAGVPADARDAVI 227


>gi|262402050|ref|ZP_06078614.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. RC586]
 gi|262351696|gb|EEZ00828.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. RC586]
          Length = 426

 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQF 85
            +  L P  G++ILD     GG +    +   +  V+A+D D   +   QE ++  K   
Sbjct: 235 ALTYLAPKAGELILDCCAAPGGKTAHILERTPDSQVVAIDCDETRLKRVQENLQRLKLNA 294

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            +        QD+  D+  D ++ D   S
Sbjct: 295 QVICGDARYPQDWWQDEQFDRILLDAPCS 323


>gi|126667181|ref|ZP_01738155.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Marinobacter sp.
           ELB17]
 gi|126628337|gb|EAZ98960.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Marinobacter sp.
           ELB17]
          Length = 441

 Score = 52.1 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 40/93 (43%), Gaps = 7/93 (7%)

Query: 23  VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82
           V++++ I  L+  PG+ +LD   G G ++    + G  V+ ++ D   V  G+E      
Sbjct: 280 VMVKRAIDWLDVQPGERVLDLFCGLGNFTLPLARRGGQVVGVEGDDAMVERGRENAALNG 339

Query: 83  -EQFSLF----QATFSQLQDYVPDKGVDGVVFD 110
            +  + F       F+        +G D ++ D
Sbjct: 340 LDNVTFFGADLHGDFT--GQSWAKEGFDKILID 370


>gi|15674247|ref|NP_268422.1| hypothetical protein L141634 [Lactococcus lactis subsp. lactis
           Il1403]
 gi|12725336|gb|AAK06363.1|AE006455_9 hypothetical protein L141634 [Lactococcus lactis subsp. lactis
           Il1403]
          Length = 196

 Score = 52.1 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 38/75 (50%), Gaps = 3/75 (4%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFS 93
                V++DAT G G  ++   ++G+NV A D    A++  ++ + D   +  +F+   S
Sbjct: 16  IKTNDVVVDATMGNGYDTQFLAELGANVYAFDVQEEALNATEKRLDDAGIKNQIFEKNLS 75

Query: 94  QLQDYVPDKGVDGVV 108
           +L   + +  V+ V+
Sbjct: 76  KL---LTEPSVNLVL 87


>gi|229823229|ref|ZP_04449298.1| hypothetical protein GCWU000282_00527 [Catonella morbi ATCC 51271]
 gi|229787395|gb|EEP23509.1| hypothetical protein GCWU000282_00527 [Catonella morbi ATCC 51271]
          Length = 189

 Score = 52.1 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 46/124 (37%), Gaps = 19/124 (15%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMG---SNVIAL 64
           M  A+H++   H   LL  +I      P  V +D T G  G+ +            V+  
Sbjct: 1   MQRALHYS---HT--LLAALIQRF---PDGVYIDGTLGK-GHDTAFILSQPGFCGQVMGF 51

Query: 65  DRDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQDYVPD-KGVDGVVFDLGVS---SMQI 118
           D    A++  QE +     +    L  A+  Q+   + +     G +++LG       QI
Sbjct: 52  DIQDQALAWTQERLAKLPNKESAQLLLASHDQIHKLLAEVPQFSGAIYNLGYLPGGDHQI 111

Query: 119 DCGD 122
              +
Sbjct: 112 TTQE 115


>gi|257437488|ref|ZP_05613243.1| putative rRNA methylase [Faecalibacterium prausnitzii A2-165]
 gi|257200056|gb|EEU98340.1| putative rRNA methylase [Faecalibacterium prausnitzii A2-165]
          Length = 285

 Score = 52.1 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 3/76 (3%)

Query: 41  LDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD 97
           +DAT G GG +   C++   G  V+  D  P A++  ++ +        L   + + L  
Sbjct: 125 IDATCGNGGDTAFLCRLVGEGGRVLGFDIQPEAIASTRQNLARKGLAAELHCDSHANLLQ 184

Query: 98  YVPDKGVDGVVFDLGV 113
           YV    VD V+F+ G 
Sbjct: 185 YVQPGTVDAVMFNFGW 200


>gi|126699666|ref|YP_001088563.1| hypothetical protein CD2049 [Clostridium difficile 630]
 gi|254975637|ref|ZP_05272109.1| hypothetical protein CdifQC_10019 [Clostridium difficile QCD-66c26]
 gi|255093024|ref|ZP_05322502.1| hypothetical protein CdifC_10279 [Clostridium difficile CIP 107932]
 gi|255101181|ref|ZP_05330158.1| hypothetical protein CdifQCD-6_10259 [Clostridium difficile
           QCD-63q42]
 gi|255307055|ref|ZP_05351226.1| hypothetical protein CdifA_10732 [Clostridium difficile ATCC 43255]
 gi|255314766|ref|ZP_05356349.1| hypothetical protein CdifQCD-7_10477 [Clostridium difficile
           QCD-76w55]
 gi|255517441|ref|ZP_05385117.1| hypothetical protein CdifQCD-_10066 [Clostridium difficile
           QCD-97b34]
 gi|255650551|ref|ZP_05397453.1| hypothetical protein CdifQCD_10241 [Clostridium difficile
           QCD-37x79]
 gi|255656020|ref|ZP_05401429.1| hypothetical protein CdifQCD-2_10044 [Clostridium difficile
           QCD-23m63]
 gi|260683649|ref|YP_003214934.1| hypothetical protein CD196_1913 [Clostridium difficile CD196]
 gi|260687309|ref|YP_003218443.1| hypothetical protein CDR20291_1956 [Clostridium difficile R20291]
 gi|296450551|ref|ZP_06892305.1| rRNA methylase [Clostridium difficile NAP08]
 gi|296879327|ref|ZP_06903322.1| rRNA methylase [Clostridium difficile NAP07]
 gi|306520499|ref|ZP_07406846.1| hypothetical protein CdifQ_11806 [Clostridium difficile QCD-32g58]
 gi|115251103|emb|CAJ68934.1| putative rRNA methylase [Clostridium difficile]
 gi|260209812|emb|CBA63659.1| conserved hypothetical protein [Clostridium difficile CD196]
 gi|260213326|emb|CBE04904.1| conserved hypothetical protein [Clostridium difficile R20291]
 gi|296260626|gb|EFH07467.1| rRNA methylase [Clostridium difficile NAP08]
 gi|296429870|gb|EFH15722.1| rRNA methylase [Clostridium difficile NAP07]
          Length = 192

 Score = 52.1 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 6/85 (7%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETMRD--YKEQFSLF 88
              G +++DAT G G  +R   +       V A D    A+   ++ +    Y ++  L 
Sbjct: 22  INEGDIVIDATMGNGYDTRYLAEKVGEKGFVYAFDIQEEAIKSTRKKLEKEGYTDRVKLI 81

Query: 89  QATFSQLQDYVPDKGVDGVVFDLGV 113
                ++  Y+ ++ V  V+F+LG 
Sbjct: 82  FDGHEKMNQYIKEE-VSCVLFNLGY 105


>gi|325263526|ref|ZP_08130260.1| putative rRNA methylase [Clostridium sp. D5]
 gi|324031235|gb|EGB92516.1| putative rRNA methylase [Clostridium sp. D5]
          Length = 188

 Score = 51.7 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 6/85 (7%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRD--YKEQFSLF 88
             PG V +DAT G G  +   C++      V A D    A++   E +    +  +  L 
Sbjct: 19  IEPGDVCVDATAGNGNDTEFLCRLAGSTGKVYAFDIQQEALAHTAERIEKLGFGSRARLI 78

Query: 89  QATFSQLQDYVPDKGVDGVVFDLGV 113
           Q    ++ +YV +  V  +VF+ G 
Sbjct: 79  QDGHEKMGEYVKE-DVSAIVFNFGY 102


>gi|295103806|emb|CBL01350.1| Predicted S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [Faecalibacterium
           prausnitzii SL3/3]
          Length = 288

 Score = 51.7 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 6/79 (7%)

Query: 41  LDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQ 94
           +DAT G GG +   C +      V+A D  P A+   +  +       +++SL   + + 
Sbjct: 125 VDATCGNGGDTAFLCNLTAPAGRVLAFDVQPEAIRSTRTRLEQANVPADRYSLVCGSHAD 184

Query: 95  LQDYVPDKGVDGVVFDLGV 113
           L  YV     D V+F+ G 
Sbjct: 185 LLQYVQPGTADAVMFNFGW 203


>gi|309389271|gb|ADO77151.1| rRNA methylase [Halanaerobium praevalens DSM 2228]
          Length = 190

 Score = 51.3 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 6/86 (6%)

Query: 33  NPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSL 87
           N   G +++DAT G G  ++      K    V A D    A+    + ++++   E+  L
Sbjct: 20  NIDEGDLVIDATAGNGYDTKFLAELVKKKGKVYAFDLQAKAIENTNKLLKEHNLLERVEL 79

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGV 113
           FQ     L  Y+ +K +  V+F+LG 
Sbjct: 80  FQTGHQNLDQYL-NKKIKAVIFNLGY 104


>gi|157130292|ref|XP_001661874.1| prip interacting protein. pimt [Aedes aegypti]
 gi|108871934|gb|EAT36159.1| prip interacting protein. pimt [Aedes aegypti]
          Length = 526

 Score = 51.3 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 44/115 (38%), Gaps = 14/115 (12%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96
           +I+DA  G GG S  F      VIA+D DP  +   +     Y   ++       F QL 
Sbjct: 370 LIVDAFCGCGGNSIQFAFTCQKVIAIDIDPKKIEMAKHNAAVYGVADRIEFITGNFLQLA 429

Query: 97  DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQA 151
           D +          D+   S          S+ K    D+  S   + A++++ +A
Sbjct: 430 DKLR--------ADVIFLSPPWGGP----SYLKDEVYDLETSLIPVPATELMRKA 472


>gi|13537283|dbj|BAB40630.1| hypothetical protein [Vibrio campbellii]
          Length = 29

 Score = 50.9 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 8/27 (29%), Positives = 12/27 (44%)

Query: 16 TIGDHVPVLLEKVIALLNPAPGKVILD 42
              H+ VLL + I  L   P  + +D
Sbjct: 3  ETFQHISVLLNESIDGLAIKPDGIYID 29


>gi|239828101|ref|YP_002950725.1| rRNA methylase [Geobacillus sp. WCH70]
 gi|239808394|gb|ACS25459.1| putative rRNA methylase [Geobacillus sp. WCH70]
          Length = 191

 Score = 50.9 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 10/91 (10%)

Query: 32  LNPAPGKVILDATFGAGGY-SRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK--EQF 85
           L    G +++DAT G  G+ +    +      +V   D    A++     ++++    + 
Sbjct: 16  LAVNEGDIVVDATVGN-GHDTLYLAQRVGESGHVFGFDIQKEAIAKTSARLQEHNMLNRV 74

Query: 86  SLFQATFSQLQDYVPDK---GVDGVVFDLGV 113
           +LFQA+  QL + +P      + G +F+LG 
Sbjct: 75  TLFQASHDQLIEKIPSIYHGRITGAMFNLGY 105


>gi|301609194|ref|XP_002934152.1| PREDICTED: trimethylguanosine synthase-like [Xenopus (Silurana)
           tropicalis]
          Length = 845

 Score = 50.9 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 38  KVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQL 95
            V++DA  G GG +  F K G+ VIA+D DP  +   +     Y   ++    +  F  L
Sbjct: 689 GVVVDAFCGVGGNAIQFAKAGNRVIAVDIDPVKLDFARNNAEVYGVTDRIEFIRGDFMLL 748

Query: 96  QDYVPDKGV 104
              +    V
Sbjct: 749 AQDLKADAV 757


>gi|296133196|ref|YP_003640443.1| putative rRNA methylase [Thermincola sp. JR]
 gi|296031774|gb|ADG82542.1| putative rRNA methylase [Thermincola potens JR]
          Length = 189

 Score = 50.9 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 33/86 (38%), Gaps = 6/86 (6%)

Query: 33  NPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK--EQFSL 87
              PG  ++DAT G G  +    +       V   D    A+   +  +      E+  L
Sbjct: 19  KIGPGATVIDATVGNGYDTLFLAEAVGVVGRVYGFDIQAEAIENTKLRLLKEGLLERVLL 78

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGV 113
           F      L   V +  +DG++F+LG 
Sbjct: 79  FHEGHENLAHRVTE-NIDGIMFNLGY 103


>gi|262172810|ref|ZP_06040488.1| ribosomal RNA small subunit methyltransferase B [Vibrio mimicus
           MB-451]
 gi|261893886|gb|EEY39872.1| ribosomal RNA small subunit methyltransferase B [Vibrio mimicus
           MB-451]
          Length = 426

 Score = 50.9 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQF 85
            +  L P  G++ILD     GG +    +   +  V+A+D D   +   QE ++  K   
Sbjct: 235 ALTYLAPKAGELILDCCAAPGGKTAHILERTPDSQVVAIDCDETRLKRVQENLQRLKLNA 294

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            +        QD+   +  D ++ D   S
Sbjct: 295 QVICGDARYPQDWWQGEQFDRILLDAPCS 323


>gi|258622988|ref|ZP_05718003.1| sun protein [Vibrio mimicus VM573]
 gi|258584771|gb|EEW09505.1| sun protein [Vibrio mimicus VM573]
          Length = 438

 Score = 50.9 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQF 85
            +  L P  G++ILD     GG +    +   +  V+A+D D   +   QE ++  K   
Sbjct: 247 ALTYLAPKAGELILDCCAAPGGKTAHILERTPDSQVVAIDCDETRLKRVQENLQRLKLNA 306

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            +        QD+   +  D ++ D   S
Sbjct: 307 QVICGDARYPQDWWQGEQFDRILLDAPCS 335


>gi|258626112|ref|ZP_05720963.1| sun protein [Vibrio mimicus VM603]
 gi|258581638|gb|EEW06536.1| sun protein [Vibrio mimicus VM603]
          Length = 438

 Score = 50.9 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQF 85
            +  L P  G++ILD     GG +    +   +  V+A+D D   +   QE ++  K   
Sbjct: 247 ALTYLAPKAGELILDCCAAPGGKTAHILERTPDSQVVAIDCDETRLKRVQENLQRLKLNA 306

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            +        QD+   +  D ++ D   S
Sbjct: 307 QVICGDARYPQDWWQGEQFDRILLDAPCS 335


>gi|212638269|ref|YP_002314789.1| SAM-dependent methyltransferase [Anoxybacillus flavithermus WK1]
 gi|212559749|gb|ACJ32804.1| SAM-dependent methyltransferase [Anoxybacillus flavithermus WK1]
          Length = 191

 Score = 50.9 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 42/91 (46%), Gaps = 10/91 (10%)

Query: 32  LNPAPGKVILDATFGAGGY-SRSFCKM---GSNVIALDRDPFAVSCGQETMRDY--KEQF 85
           L    G +++DAT G  G+ +    +      +V   D    A+    + + ++  + + 
Sbjct: 17  LAVKEGDIVVDATIGN-GHDTLYLAERVGQSGHVFGFDIQAQAIENTTKRLHEHHMETRV 75

Query: 86  SLFQATFSQLQDYVP---DKGVDGVVFDLGV 113
           +L QA+ +++  ++P      + G +F+LG 
Sbjct: 76  TLVQASHAEIDAHIPPEYKGRITGAMFNLGY 106


>gi|118468434|ref|YP_887597.1| methyltransferase [Mycobacterium smegmatis str. MC2 155]
 gi|118169721|gb|ABK70617.1| methyltransferase [Mycobacterium smegmatis str. MC2 155]
          Length = 243

 Score = 50.6 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 4/84 (4%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSL 87
            +AL+    G+ ILDA  G G Y+    K G+++I  D+ P  V   +  +     +   
Sbjct: 36  CLALIGDVAGRTILDAACGPGLYAEELAKRGASLIGFDQSPRMVELARARVPSGDFRVHD 95

Query: 88  FQATFSQLQDYVPDKGVDGVVFDL 111
                    D++P + VD V+  L
Sbjct: 96  LAGP----LDWLPSQSVDAVLLAL 115


>gi|189426228|ref|YP_001953405.1| rRNA methylase [Geobacter lovleyi SZ]
 gi|189422487|gb|ACD96885.1| putative rRNA methylase [Geobacter lovleyi SZ]
          Length = 200

 Score = 50.6 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 12/111 (10%)

Query: 13  IHHTIGDHVPVLLEKV-IALLN----PAPGKVILDATFGAGGYSRSFCKM---GSNVIAL 64
           +  T   H PVL   V ++ L        G  ++DAT G G  +    ++     +V A 
Sbjct: 1   MPSTKAPH-PVLRGPVPLSHLLLQRFIQSGSRVIDATCGNGKDTLLLAELVGETGHVWAF 59

Query: 65  DRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
           D    A+    + + +    ++ SL  A   +L + V    + GVVF+LG 
Sbjct: 60  DIQQEALDRTAQRLAEQNLQQRVSLLHAGHERLLELVK-PPLHGVVFNLGW 109


>gi|295110324|emb|CBL24277.1| Predicted S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [Ruminococcus obeum A2-162]
          Length = 187

 Score = 50.6 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 5/86 (5%)

Query: 33  NPAPGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPFAVSCGQETM--RDYKEQFSL 87
              PG + +DAT G G  +   C   +   +V A D    A++  ++ +   D    ++L
Sbjct: 17  QVQPGDICIDATMGNGNDTLLLCSLCQETGHVYAFDIQEQALAHTRQKLQNADVPTNYTL 76

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGV 113
              + + +  YV    V  +VF+LG 
Sbjct: 77  LLESHANMDHYVQPDSVSCIVFNLGY 102


>gi|15615847|ref|NP_244151.1| hypothetical protein BH3285 [Bacillus halodurans C-125]
 gi|10175908|dbj|BAB07004.1| BH3285 [Bacillus halodurans C-125]
          Length = 190

 Score = 50.6 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 42/99 (42%), Gaps = 15/99 (15%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMR 79
           LL+ V+      PG + +D T G  G+   F         +V   D    A+    + ++
Sbjct: 13  LLQNVL-----TPGSIAVDGTTGN-GHDTVFLAKLVGETGHVYGFDVQEQAIHQTNKRVK 66

Query: 80  D--YKEQFSLFQATFSQLQDYVP---DKGVDGVVFDLGV 113
           +  + E+ +LF A+  Q+   +P      +   +F+LG 
Sbjct: 67  ELGFPERVTLFHASHEQVATLIPPDQHPNIKAAIFNLGY 105


>gi|293563986|ref|ZP_06678393.1| methyltransferase [Enterococcus faecium E1162]
 gi|291604076|gb|EFF33603.1| methyltransferase [Enterococcus faecium E1162]
          Length = 189

 Score = 50.6 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 15/101 (14%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQ 75
           H   LL++++      PG  ++DAT G  G+   F         +V + D    A+   +
Sbjct: 10  HT--LLQEIL-----QPGDHVVDATMGN-GHDTVFLAEHIGKTGHVYSFDIQQQAIDATR 61

Query: 76  ETM--RDYKEQFSLFQATFSQLQDYVPD-KGVDGVVFDLGV 113
           E +  R  +E+ SLF      L + + + + +   +F+LG 
Sbjct: 62  ERLEQRQLEERVSLFLQGHETLGEVIAEQQNLKAGIFNLGY 102


>gi|258614091|ref|ZP_05711861.1| hypothetical protein EfaeD_00112 [Enterococcus faecium DO]
          Length = 187

 Score = 50.6 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 15/101 (14%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQ 75
           H   LL++++      PG  ++DAT G  G+   F         +V + D    A+   +
Sbjct: 10  HT--LLQEIL-----QPGDHVVDATMGN-GHDTVFLAEHIGKTGHVYSFDIQQQAIDATR 61

Query: 76  ETM--RDYKEQFSLFQATFSQLQDYVPD-KGVDGVVFDLGV 113
           E +  R  +E+ SLF      L + + + + +   +F+LG 
Sbjct: 62  ERLEQRQLEERVSLFLQGHETLGEVIAEQQNLKAGIFNLGY 102


>gi|257877004|ref|ZP_05656657.1| SAM-dependent methyltransferase [Enterococcus casseliflavus EC20]
 gi|257811170|gb|EEV39990.1| SAM-dependent methyltransferase [Enterococcus casseliflavus EC20]
          Length = 187

 Score = 50.6 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 39/99 (39%), Gaps = 13/99 (13%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H   LL++V+      PG+  +DAT G G  +     +      V A D    A+   ++
Sbjct: 5   HT--LLKEVL-----QPGQTAVDATMGNGFDTELLASLVGPTGQVFAFDIQEQALQATKK 57

Query: 77  TMRDYK--EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
            + + +   Q  L       L + V    V   +F+LG 
Sbjct: 58  RLAEKELLAQVQLIHQGHETLAEVVSGP-VHAAIFNLGY 95


>gi|160943569|ref|ZP_02090802.1| hypothetical protein FAEPRAM212_01062 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445248|gb|EDP22251.1| hypothetical protein FAEPRAM212_01062 [Faecalibacterium prausnitzii
           M21/2]
          Length = 328

 Score = 50.6 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 6/79 (7%)

Query: 41  LDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQ 94
           +DAT G GG +   C +      V+A D  P A+   +  +       E++ L   + + 
Sbjct: 165 VDATCGNGGDTAFLCGLTAPAGRVLAFDVQPEAIRSTRARLEKANVPAERYELICGSHAD 224

Query: 95  LQDYVPDKGVDGVVFDLGV 113
           L  YV     D V+F+ G 
Sbjct: 225 LLQYVQPGTADAVMFNFGW 243


>gi|330904805|gb|EGH35377.1| 16S rRNA m(4)C1402 methyltranserfase [Pseudomonas syringae pv.
          japonica str. M301072PT]
          Length = 48

 Score = 50.2 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 4/49 (8%)

Query: 48 GGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFS 93
          GG+SR           ++  D+DP A++ GQ  +     +F + Q  F+
Sbjct: 1  GGHSRLILSQLGPDGRLLGFDKDPQAIATGQA-LAAEDGRFVIVQRIFA 48


>gi|257880445|ref|ZP_05660098.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
 gi|257883258|ref|ZP_05662911.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
 gi|257886333|ref|ZP_05665986.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
 gi|257891525|ref|ZP_05671178.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
 gi|257894534|ref|ZP_05674187.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
 gi|257814673|gb|EEV43431.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
 gi|257818916|gb|EEV46244.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
 gi|257822189|gb|EEV49319.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
 gi|257827885|gb|EEV54511.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
 gi|257830913|gb|EEV57520.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
          Length = 189

 Score = 50.2 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 15/101 (14%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQ 75
           H   LL++++      PG  ++DAT G  G+   F         +V + D    A+   +
Sbjct: 11  HT--LLQEIL-----QPGDHVVDATMGN-GHDTVFLAEHIGKTGHVYSFDIQQQAIDATR 62

Query: 76  ETM--RDYKEQFSLFQATFSQLQDYVPD-KGVDGVVFDLGV 113
           E +  R  +E+ SLF      L + + + + +   +F+LG 
Sbjct: 63  ERLEQRQLEERVSLFLQGHETLGEVIAEQQNLKAGIFNLGY 103


>gi|69244085|ref|ZP_00602621.1| Putative rRNA methylase [Enterococcus faecium DO]
 gi|260562444|ref|ZP_05832954.1| conserved hypothetical protein [Enterococcus faecium C68]
 gi|261206890|ref|ZP_05921580.1| conserved hypothetical protein [Enterococcus faecium TC 6]
 gi|289567067|ref|ZP_06447464.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
 gi|293569441|ref|ZP_06680737.1| methyltransferase [Enterococcus faecium E1071]
 gi|294613891|ref|ZP_06693829.1| methyltransferase [Enterococcus faecium E1636]
 gi|294619127|ref|ZP_06698619.1| methyltransferase [Enterococcus faecium E1679]
 gi|294622187|ref|ZP_06701252.1| methyltransferase [Enterococcus faecium U0317]
 gi|314943338|ref|ZP_07850113.1| rRNA methylase family protein [Enterococcus faecium TX0133C]
 gi|314949262|ref|ZP_07852608.1| rRNA methylase family protein [Enterococcus faecium TX0082]
 gi|314953920|ref|ZP_07856778.1| rRNA methylase family protein [Enterococcus faecium TX0133A]
 gi|314993190|ref|ZP_07858571.1| rRNA methylase family protein [Enterococcus faecium TX0133B]
 gi|314997352|ref|ZP_07862309.1| rRNA methylase family protein [Enterococcus faecium TX0133a01]
 gi|68196542|gb|EAN10968.1| Putative rRNA methylase [Enterococcus faecium DO]
 gi|260073129|gb|EEW61474.1| conserved hypothetical protein [Enterococcus faecium C68]
 gi|260078868|gb|EEW66569.1| conserved hypothetical protein [Enterococcus faecium TC 6]
 gi|289161146|gb|EFD09049.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
 gi|291587861|gb|EFF19713.1| methyltransferase [Enterococcus faecium E1071]
 gi|291593256|gb|EFF24827.1| methyltransferase [Enterococcus faecium E1636]
 gi|291594613|gb|EFF25998.1| methyltransferase [Enterococcus faecium E1679]
 gi|291598284|gb|EFF29376.1| methyltransferase [Enterococcus faecium U0317]
 gi|313588566|gb|EFR67411.1| rRNA methylase family protein [Enterococcus faecium TX0133a01]
 gi|313592304|gb|EFR71149.1| rRNA methylase family protein [Enterococcus faecium TX0133B]
 gi|313594119|gb|EFR72964.1| rRNA methylase family protein [Enterococcus faecium TX0133A]
 gi|313597950|gb|EFR76795.1| rRNA methylase family protein [Enterococcus faecium TX0133C]
 gi|313644361|gb|EFS08941.1| rRNA methylase family protein [Enterococcus faecium TX0082]
          Length = 188

 Score = 50.2 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 15/101 (14%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQ 75
           H   LL++++      PG  ++DAT G  G+   F         +V + D    A+   +
Sbjct: 10  HT--LLQEIL-----QPGDHVVDATMGN-GHDTVFLAEHIGKTGHVYSFDIQQQAIDATR 61

Query: 76  ETM--RDYKEQFSLFQATFSQLQDYVPD-KGVDGVVFDLGV 113
           E +  R  +E+ SLF      L + + + + +   +F+LG 
Sbjct: 62  ERLEQRQLEERVSLFLQGHETLGEVIAEQQNLKAGIFNLGY 102


>gi|86159623|ref|YP_466408.1| type 12 methyltransferase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85776134|gb|ABC82971.1| Methyltransferase type 12 [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 198

 Score = 50.2 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 2/99 (2%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84
           L  ++  L   P    LD   G G ++      G  V  +D  P A++  ++   D    
Sbjct: 25  LSALVEGLRARPPGRALDLGCGRGAHAVYLASHGWKVTGVDLVPAALAKARQRATDAGVD 84

Query: 85  FSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDR 123
                   ++L       G D ++ D G     +   +R
Sbjct: 85  VQFLDGDVTRLDTLGLSPGYD-LLLDAGC-FHGLSDPER 121


>gi|297528996|ref|YP_003670271.1| rRNA methylase [Geobacillus sp. C56-T3]
 gi|297252248|gb|ADI25694.1| putative rRNA methylase [Geobacillus sp. C56-T3]
          Length = 195

 Score = 50.2 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 45/99 (45%), Gaps = 15/99 (15%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGY-SRSFCKM---GSNVIALDRDPFAVSCGQETMR 79
           LL++ +       G + +DAT G  G+ +    +      +V   D  P A++     + 
Sbjct: 13  LLDQAVN-----EGDIAVDATVGN-GHDTVYLAERVGETGHVFGFDIQPEAITAASARLA 66

Query: 80  DYK--EQFSLFQATFSQLQDYVPDK---GVDGVVFDLGV 113
           ++    + +LF+ + S+L + +P      + G VF+LG 
Sbjct: 67  EHGLCGRATLFERSHSELLEALPADVHGRIAGAVFNLGY 105


>gi|261418138|ref|YP_003251820.1| rRNA methylase [Geobacillus sp. Y412MC61]
 gi|319767902|ref|YP_004133403.1| rRNA methylase [Geobacillus sp. Y412MC52]
 gi|261374595|gb|ACX77338.1| putative rRNA methylase [Geobacillus sp. Y412MC61]
 gi|317112768|gb|ADU95260.1| rRNA methylase [Geobacillus sp. Y412MC52]
          Length = 195

 Score = 50.2 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 45/99 (45%), Gaps = 15/99 (15%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGY-SRSFCKM---GSNVIALDRDPFAVSCGQETMR 79
           LL++ +       G + +DAT G  G+ +    +      +V   D  P A++     + 
Sbjct: 13  LLDQAVN-----EGDIAVDATVGN-GHDTVYLAERVGETGHVFGFDIQPEAITAASARLA 66

Query: 80  DYK--EQFSLFQATFSQLQDYVPDK---GVDGVVFDLGV 113
           ++    + +LF+ + S+L + +P      + G VF+LG 
Sbjct: 67  EHGLCGRATLFERSHSELLEALPADVHGRIAGAVFNLGY 105


>gi|314940365|ref|ZP_07847527.1| rRNA methylase family protein [Enterococcus faecium TX0133a04]
 gi|313640405|gb|EFS04985.1| rRNA methylase family protein [Enterococcus faecium TX0133a04]
          Length = 196

 Score = 49.8 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 15/101 (14%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQ 75
           H   LL++++      PG  ++DAT G  G+   F         +V + D    A+   +
Sbjct: 10  HT--LLQEIL-----QPGDHVVDATMGN-GHDTVFLAEHIGKTGHVYSFDIQQQAIDATR 61

Query: 76  ETM--RDYKEQFSLFQATFSQLQDYVPD-KGVDGVVFDLGV 113
           E +  R  +E+ SLF      L + + + + +   +F+LG 
Sbjct: 62  ERLEQRQLEERVSLFLQGHETLGEVIAEQQNLKAGIFNLGY 102


>gi|54295215|ref|YP_127630.1| hypothetical protein lpl2298 [Legionella pneumophila str. Lens]
 gi|53755047|emb|CAH16538.1| hypothetical protein lpl2298 [Legionella pneumophila str. Lens]
          Length = 212

 Score = 49.8 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 40/102 (39%), Gaps = 12/102 (11%)

Query: 15  HTIGDHVPVLLEKVI----ALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFA 70
            + G H  V+ E+       L N    K+++D   G GG + +  + G  VIA++ D   
Sbjct: 34  DSEGLH-TVMPEEATLTQAKLFN--NAKIVVDGFCGIGGSAIALARTGKKVIAIEMDSVR 90

Query: 71  VSCGQETMRDYK--EQFSLFQATFSQLQDYVPDKGVDGVVFD 110
           ++  +   R Y      +     F    D   +   D V+ D
Sbjct: 91  LAMAKNNARVYGVEHLITFVHGDFF---DVAAEIKADAVLID 129


>gi|295317811|gb|ADF98188.1| conserved hypothetical protein [Clostridium botulinum F str.
           230613]
          Length = 188

 Score = 49.8 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 35/82 (42%), Gaps = 7/82 (8%)

Query: 37  GKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQAT 91
           G +++D T G  G+              VI+ D    A++  +E +R++  +  +L    
Sbjct: 24  GDIVVDCTLGK-GHDTILLANLVGNKGKVISFDIQKEAINKTKEKLREFDYKNITLINDG 82

Query: 92  FSQLQDYVPDKGVDGVVFDLGV 113
              L  ++ +  V   +F+LG 
Sbjct: 83  HENLDRHIQE-KVKLFIFNLGY 103


>gi|293553710|ref|ZP_06674333.1| methyltransferase [Enterococcus faecium E1039]
 gi|291602136|gb|EFF32365.1| methyltransferase [Enterococcus faecium E1039]
          Length = 173

 Score = 49.8 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 15/101 (14%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQ 75
           H   LL++++      PG  ++DAT G  G+   F         +V + D    A+   +
Sbjct: 10  HT--LLQEIL-----QPGDHVVDATMGN-GHDTVFLAEHIGKTGHVYSFDIQQQAIDATR 61

Query: 76  ETM--RDYKEQFSLFQATFSQLQDYVPD-KGVDGVVFDLGV 113
           E +  R  +E+ SLF      L + + + + +   +F+LG 
Sbjct: 62  ERLEQRQLEERVSLFLQGHETLGEVIAEQQNLKAGIFNLGY 102


>gi|153939332|ref|YP_001389723.1| hypothetical protein CLI_0427 [Clostridium botulinum F str.
           Langeland]
 gi|170757483|ref|YP_001780008.1| hypothetical protein CLD_0396 [Clostridium botulinum B1 str. Okra]
 gi|152935228|gb|ABS40726.1| conserved hypothetical protein [Clostridium botulinum F str.
           Langeland]
 gi|169122695|gb|ACA46531.1| conserved hypothetical protein [Clostridium botulinum B1 str. Okra]
          Length = 188

 Score = 49.8 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 35/82 (42%), Gaps = 7/82 (8%)

Query: 37  GKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQAT 91
           G +++D T G  G+              VI+ D    A++  +E +R++  +  +L    
Sbjct: 24  GDIVVDCTLGK-GHDTILLANLVGNKGKVISFDIQKEAINKTKEKLREFDYKNITLINDG 82

Query: 92  FSQLQDYVPDKGVDGVVFDLGV 113
              L  ++ +  V   +F+LG 
Sbjct: 83  HENLDRHIQE-KVKLFIFNLGY 103


>gi|154687178|ref|YP_001422339.1| YtqB [Bacillus amyloliquefaciens FZB42]
 gi|154353029|gb|ABS75108.1| YtqB [Bacillus amyloliquefaciens FZB42]
          Length = 193

 Score = 49.8 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 9/87 (10%)

Query: 35  APGKVILDATFGAGGYSRSFCK----MGSNVIALDRDPFAVSCGQETM-RDYKEQFSLFQ 89
             G + +DAT G  G+   F         +V A D    A++  +E +  D+  + +L  
Sbjct: 19  QEGDITVDATMGN-GHDTYFLAGLVGETGHVHAFDIQADALAKTKERLGADFSPRVTLHH 77

Query: 90  ATFSQLQDYVPDKG---VDGVVFDLGV 113
            +  Q++  +P+     V   VF+LG 
Sbjct: 78  KSHDQIKASLPEDAHGRVACAVFNLGY 104


>gi|39995796|ref|NP_951747.1| hypothetical protein GSU0690 [Geobacter sulfurreducens PCA]
 gi|39982560|gb|AAR34020.1| conserved hypothetical protein [Geobacter sulfurreducens PCA]
 gi|298504804|gb|ADI83527.1| rRNA methyltransferase, putative [Geobacter sulfurreducens KN400]
          Length = 189

 Score = 49.8 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 8/85 (9%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDY--KEQFSL 87
             PG  ++DAT G  G+   F          V A D    A++   + +      E+  L
Sbjct: 20  VKPGDRVVDATCGN-GHDTLFLAELVGPEGRVWAFDIQDAALAATAKRLEAAGCGERVEL 78

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLG 112
                 +L + VP   V  VVF+LG
Sbjct: 79  VNGGHERLAELVPGP-VTAVVFNLG 102


>gi|167759369|ref|ZP_02431496.1| hypothetical protein CLOSCI_01716 [Clostridium scindens ATCC 35704]
 gi|167662926|gb|EDS07056.1| hypothetical protein CLOSCI_01716 [Clostridium scindens ATCC 35704]
          Length = 187

 Score = 49.8 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 9/101 (8%)

Query: 26  EKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETMRDYK 82
            ++I     A G   +DAT G G  +   C +      V+A D    A+   Q  +++  
Sbjct: 11  HEIIRSQA-AAGGFYIDATMGNGKDTLMLCTLAGKAGSVLAFDIQDTALQATQRLLKEQG 69

Query: 83  --EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVS---SMQI 118
             E+ SL +     +  Y  +   D + F+ G     S  I
Sbjct: 70  CLERASLIKDGHEHMDLYAGEGTADVICFNFGYLPGGSHHI 110


>gi|332193122|gb|AEE31243.1| S-adenosyl-L-methionine-dependent methyltransferase
           domain-containing protein [Arabidopsis thaliana]
          Length = 221

 Score = 49.8 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 44/109 (40%), Gaps = 12/109 (11%)

Query: 37  GKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQ 94
           GKV++D   G GG +  F K+ S+VIA+D DP  ++      + Y    +       F Q
Sbjct: 62  GKVVIDCFSGVGGNTIQFAKVCSSVIAIDIDPMKIALAMNNAKVYGVANRIDFVTGDFMQ 121

Query: 95  LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGIS 143
           L   +          D+   S         +S  +S  LDM +   G S
Sbjct: 122 LAPSLK--------GDVLFLSPPWGGP--TYSKVESYKLDMLLPRDGYS 160


>gi|238478691|ref|NP_001154386.1| unknown protein [Arabidopsis thaliana]
          Length = 239

 Score = 49.8 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 44/109 (40%), Gaps = 12/109 (11%)

Query: 37  GKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQ 94
           GKV++D   G GG +  F K+ S+VIA+D DP  ++      + Y    +       F Q
Sbjct: 80  GKVVIDCFSGVGGNTIQFAKVCSSVIAIDIDPMKIALAMNNAKVYGVANRIDFVTGDFMQ 139

Query: 95  LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGIS 143
           L   +          D+   S         +S  +S  LDM +   G S
Sbjct: 140 LAPSLK--------GDVLFLSPPWGGP--TYSKVESYKLDMLLPRDGYS 178


>gi|149181473|ref|ZP_01859969.1| SAM-dependent methyltransferase, MraW methylase family protein
           [Bacillus sp. SG-1]
 gi|148850874|gb|EDL65028.1| SAM-dependent methyltransferase, MraW methylase family protein
           [Bacillus sp. SG-1]
          Length = 190

 Score = 49.8 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 10/90 (11%)

Query: 33  NPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMR--DYKEQFS 86
              PG + +DAT G  G+   F          V   D    A+   +E ++  + +E+ +
Sbjct: 17  AVNPGDIAIDATLGN-GHDTLFLAQLVGENGRVYGFDIQEEALFNTRERLQTHNLQERVT 75

Query: 87  LFQATFSQLQDYVP---DKGVDGVVFDLGV 113
           LF+     + + VP      V G +F+LG 
Sbjct: 76  LFKQGHETVGNVVPPVHYGKVTGAIFNLGY 105


>gi|307611227|emb|CBX00878.1| hypothetical protein LPW_25811 [Legionella pneumophila 130b]
          Length = 212

 Score = 49.8 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 12/102 (11%)

Query: 15  HTIGDHVPVLLEKVIALLNPAP----GKVILDATFGAGGYSRSFCKMGSNVIALDRDPFA 70
            + G H  V+ E+  A L  A      K+++D   G GG + +  + G  VIA++ D   
Sbjct: 34  DSEGLH-TVMPEE--AALTQAKLFNNAKIVVDGFCGIGGSAIALARTGKKVIAIEMDSVR 90

Query: 71  VSCGQETMRDYK--EQFSLFQATFSQLQDYVPDKGVDGVVFD 110
           ++  +   R Y      +     F    D   +   D V+ D
Sbjct: 91  LAMAKNNARVYGVEHLITFVHGDFF---DVAAEIKADAVLID 129


>gi|325568219|ref|ZP_08144627.1| rRNA methylase [Enterococcus casseliflavus ATCC 12755]
 gi|325158252|gb|EGC70404.1| rRNA methylase [Enterococcus casseliflavus ATCC 12755]
          Length = 192

 Score = 49.4 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 38/99 (38%), Gaps = 13/99 (13%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQE 76
           H   LL++V+      PG   +DAT G G  +     +      V A D    A+   ++
Sbjct: 10  HT--LLKEVV-----QPGHTAVDATMGNGFDTELLASLVGPTGQVFAFDIQEQALQATKK 62

Query: 77  TM--RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
            +  ++   Q  L       L D V    V   +F+LG 
Sbjct: 63  RLTEKELLPQVQLIHQGHETLADVVSGP-VHAAIFNLGY 100


>gi|52081533|ref|YP_080324.1| hypothetical protein BL00061 [Bacillus licheniformis ATCC 14580]
 gi|319647443|ref|ZP_08001664.1| YtqB protein [Bacillus sp. BT1B_CT2]
 gi|52004744|gb|AAU24686.1| conserved protein YtqB [Bacillus licheniformis ATCC 14580]
 gi|317390489|gb|EFV71295.1| YtqB protein [Bacillus sp. BT1B_CT2]
          Length = 194

 Score = 49.4 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 9/86 (10%)

Query: 36  PGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMR-DYKEQFSLFQA 90
            G +++DAT G  G+   F         +V A D    A+    E +  +YK++ +L Q 
Sbjct: 20  EGDIVIDATMGN-GHDTHFLAELVGESGHVYAFDIQEAALMNTAERLGNEYKDRVTLIQK 78

Query: 91  TFSQLQDYVPDK---GVDGVVFDLGV 113
           +  +L   +PD     V   VF+LG 
Sbjct: 79  SHDELTTSLPDDISGKVAAAVFNLGY 104


>gi|16080101|ref|NP_390927.1| RNA methylase [Bacillus subtilis subsp. subtilis str. 168]
 gi|221310989|ref|ZP_03592836.1| hypothetical protein Bsubs1_16601 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221315316|ref|ZP_03597121.1| hypothetical protein BsubsN3_16507 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221320233|ref|ZP_03601527.1| hypothetical protein BsubsJ_16428 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221324515|ref|ZP_03605809.1| hypothetical protein BsubsS_16577 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|81815732|sp|O34614|YTQB_BACSU RecName: Full=Putative rRNA methylase ytqB
 gi|2293301|gb|AAC00379.1| YtqB [Bacillus subtilis]
 gi|2635533|emb|CAB15027.1| putative RNA methylase [Bacillus subtilis subsp. subtilis str. 168]
          Length = 194

 Score = 49.4 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 9/86 (10%)

Query: 36  PGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRD-YKEQFSLFQA 90
            G +++DAT G  G+   F         +V A D    AV+  +E + D Y+ + +LF  
Sbjct: 20  EGDIVVDATMGN-GHDTQFLAELVGENGHVYAFDIQESAVANTKERLGDMYQARTTLFHK 78

Query: 91  TFSQLQDYVP---DKGVDGVVFDLGV 113
           +  ++ + +P      V   VF+LG 
Sbjct: 79  SHDKIAESLPPETHGKVAAAVFNLGY 104


>gi|291485487|dbj|BAI86562.1| hypothetical protein BSNT_04441 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 194

 Score = 49.4 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 9/86 (10%)

Query: 36  PGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRD-YKEQFSLFQA 90
            G +++DAT G  G+   F         +V A D    AV+  +E + D Y+ + +LF  
Sbjct: 20  EGDIVVDATMGN-GHDTQFLAELVGENGHVYAFDIQESAVANTKERLGDMYQARTTLFHK 78

Query: 91  TFSQLQDYVP---DKGVDGVVFDLGV 113
           +  ++ + +P      V   VF+LG 
Sbjct: 79  SHDKIAESLPPETHGKVAAAVFNLGY 104


>gi|323493837|ref|ZP_08098955.1| 16S rRNA methyltransferase B [Vibrio brasiliensis LMG 20546]
 gi|323311971|gb|EGA65117.1| 16S rRNA methyltransferase B [Vibrio brasiliensis LMG 20546]
          Length = 426

 Score = 49.4 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85
            I  L P  G++ILD     GG +    +   GS V+A+D D   +    + ++    + 
Sbjct: 235 SINYLTPQDGELILDCCAAPGGKTAHILERTQGSEVVAIDCDDTRLKRVHDNLQRLNLKA 294

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            +        QD+   +  D ++ D   S
Sbjct: 295 KVICGDARNPQDWWQGEQFDRILLDAPCS 323


>gi|222056740|ref|YP_002539102.1| rRNA methylase [Geobacter sp. FRC-32]
 gi|221566029|gb|ACM22001.1| putative rRNA methylase [Geobacter sp. FRC-32]
          Length = 228

 Score = 49.4 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 8/86 (9%)

Query: 34  PAPGKVILDATFGAGGYSRSFC----KMGSNVIALDRDPFAVSCGQETMRDYK--EQFSL 87
             PG  ++DAT G  G+   F     +    V A D    A+   +  + + K  ++  L
Sbjct: 60  VKPGDRVVDATCGN-GHDTLFLAGLVEAEGAVFAFDVQEQALEKTRLLLEENKCLDRVQL 118

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGV 113
           F A   +L  YVPD  V  V F+LG 
Sbjct: 119 FHAGHQELAAYVPDP-VQAVAFNLGY 143


>gi|194017839|ref|ZP_03056448.1| YtqB [Bacillus pumilus ATCC 7061]
 gi|194010491|gb|EDW20064.1| YtqB [Bacillus pumilus ATCC 7061]
          Length = 193

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 39/95 (41%), Gaps = 9/95 (9%)

Query: 26  EKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSN---VIALDRDPFAVSCGQETMRDY 81
           ++++       G +++DAT G  G+ +     +  +   V A D    A+   ++ + + 
Sbjct: 11  KELLER-ACQKGDIVIDATMGN-GHDTLYLADLVGHDGQVFAFDVQEEAIQQTRKRLGEG 68

Query: 82  KEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGV 113
                L      +L  ++P      + G VF+LG 
Sbjct: 69  YPYVHLIHDGHEKLAQHLPRDVYGHISGAVFNLGY 103


>gi|148269539|ref|YP_001243999.1| hypothetical protein Tpet_0397 [Thermotoga petrophila RKU-1]
 gi|147735083|gb|ABQ46423.1| hypothetical protein Tpet_0397 [Thermotoga petrophila RKU-1]
          Length = 254

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 52/149 (34%), Gaps = 31/149 (20%)

Query: 29  IALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDR----------DPFAVSCG 74
           I  L P   +++LD TFG G  S +           VI L+                   
Sbjct: 85  IESLQPEGNEIVLDTTFGLG--SEAILMAAFLPEGKVIGLEGSIHIYTIVKYGMENFETD 142

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
            + ++D  ++  L+ A F +     PD   D V  D        +       ++ S    
Sbjct: 143 IQWLKDALKRIELYHANFKEYIRSQPDNSFDVVYCD-----PMFENPV----YESSA--- 190

Query: 135 MRMSCSGISA-SDVVNQANVKDLTRILGI 162
             M+     A  D VN+ +++++ RI   
Sbjct: 191 --MNPLRPFAVYDTVNEEDIEEMLRIAKK 217


>gi|89099660|ref|ZP_01172534.1| hypothetical protein B14911_24130 [Bacillus sp. NRRL B-14911]
 gi|89085603|gb|EAR64730.1| hypothetical protein B14911_24130 [Bacillus sp. NRRL B-14911]
          Length = 190

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 10/90 (11%)

Query: 33  NPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK--EQFS 86
             +PG +++DAT G  G+   +          V   D    A+   +  +  +   E+ +
Sbjct: 17  AVSPGDIVVDATLGN-GHDALYLANLVGPNGRVYGFDIQEQAIHNSRIRLSGHGMEERAT 75

Query: 87  LFQATFSQLQDYVP---DKGVDGVVFDLGV 113
           LF +   QL + +P    K +   +F+LG 
Sbjct: 76  LFHSGHEQLLECIPPVHHKKIAAAIFNLGY 105


>gi|295101193|emb|CBK98738.1| Predicted S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [Faecalibacterium
           prausnitzii L2-6]
          Length = 285

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 3/76 (3%)

Query: 41  LDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD 97
           +DAT G GG +   C++      V+  D  P A++  +  +        L   + + L  
Sbjct: 125 IDATCGNGGDTAFLCRLAGPEGRVLGFDIQPEAITSTRARLEKQGLTAELICDSHANLLQ 184

Query: 98  YVPDKGVDGVVFDLGV 113
           YV     D V+F+ G 
Sbjct: 185 YVRSGTADIVMFNFGW 200


>gi|209693697|ref|YP_002261625.1| ribosomal RNA small subunit methyltransferase B [Aliivibrio
           salmonicida LFI1238]
 gi|208007648|emb|CAQ77758.1| ribosomal RNA small subunit methyltransferase B [Aliivibrio
           salmonicida LFI1238]
          Length = 444

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 36/89 (40%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85
            +  L P  G++ILD     GG +    +    +NV+A+D D   ++   E +     + 
Sbjct: 253 SVEYLQPQDGELILDCCAAPGGKTAHILERTKNTNVVAIDCDETRLTRVYENLERLNLEA 312

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            +        +++   +  D ++ D   S
Sbjct: 313 KVICGDARHPEEWWQGEQFDRILLDAPCS 341


>gi|319651929|ref|ZP_08006052.1| hypothetical protein HMPREF1013_02664 [Bacillus sp. 2_A_57_CT2]
 gi|317396421|gb|EFV77136.1| hypothetical protein HMPREF1013_02664 [Bacillus sp. 2_A_57_CT2]
          Length = 190

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 10/90 (11%)

Query: 33  NPAPGKVILDATFGAGGYSRSFCK----MGSNVIALDRDPFAVSCGQETMRDYK--EQFS 86
             +PG +++DAT G  G+   F          V   D    AV   +  + D+   ++ +
Sbjct: 17  AVSPGDIVIDATLGN-GHDTVFLADLVGHNGRVYGFDIQEEAVQNTKTRLADHDLSDRAT 75

Query: 87  LFQATFSQLQDYVP---DKGVDGVVFDLGV 113
           LF      + + VP      +   +F+LG 
Sbjct: 76  LFHTGHEFILENVPPVHHGKITAAIFNLGY 105


>gi|293571991|ref|ZP_06683004.1| SAM-dependent methyltransferase [Enterococcus faecium E980]
 gi|291607915|gb|EFF37224.1| SAM-dependent methyltransferase [Enterococcus faecium E980]
          Length = 188

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 14/89 (15%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQ 75
           H   LL++++      PG  ++DAT G  G+   F         +V + D    A+   +
Sbjct: 10  HT--LLQEIL-----QPGDHVVDATMGN-GHDTVFLAEHIGKTGHVYSFDIQQQAIDATR 61

Query: 76  ETMRDY--KEQFSLFQATFSQLQDYVPDK 102
           E +  +  +E+ SLF      L + + ++
Sbjct: 62  EKLEQHQLEERVSLFLQGHETLGEVIAEQ 90


>gi|257900323|ref|ZP_05679976.1| conserved hypothetical protein [Enterococcus faecium Com15]
 gi|257838235|gb|EEV63309.1| conserved hypothetical protein [Enterococcus faecium Com15]
          Length = 189

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 14/89 (15%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQ 75
           H   LL++++      PG  ++DAT G  G+   F         +V + D    A+   +
Sbjct: 11  HT--LLQEIL-----QPGDHVVDATMGN-GHDTVFLAEHIGKTGHVYSFDIQQQAIDATR 62

Query: 76  ETMRDY--KEQFSLFQATFSQLQDYVPDK 102
           E +  +  +E+ SLF      L + + ++
Sbjct: 63  EKLEQHQLEERVSLFLQGHETLGEVIAEQ 91


>gi|257897586|ref|ZP_05677239.1| rRNA methylase [Enterococcus faecium Com12]
 gi|257834151|gb|EEV60572.1| rRNA methylase [Enterococcus faecium Com12]
          Length = 181

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 14/89 (15%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQ 75
           H   LL++++      PG  ++DAT G  G+   F         +V + D    A+   +
Sbjct: 11  HT--LLQEIL-----QPGDHVVDATMGN-GHDTVFLAEHIGKTGHVYSFDIQQQAIDATR 62

Query: 76  ETMRDY--KEQFSLFQATFSQLQDYVPDK 102
           E +  +  +E+ SLF      L + + ++
Sbjct: 63  EKLEQHQLEERVSLFLQGHETLGEVIAEQ 91


>gi|226323861|ref|ZP_03799379.1| hypothetical protein COPCOM_01636 [Coprococcus comes ATCC 27758]
 gi|225207410|gb|EEG89764.1| hypothetical protein COPCOM_01636 [Coprococcus comes ATCC 27758]
          Length = 186

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 44/100 (44%), Gaps = 14/100 (14%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQ 75
            H+   LE+ I       G + +DAT G GG +   C+      NV A D    A++  +
Sbjct: 10  HHI---LEEYIE-----EGDICIDATAGNGGDTEFLCQKVGETGNVYAFDVQEMAIAHTR 61

Query: 76  ETM--RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
           E +   +   +  L Q    ++Q YV ++    ++F+ G 
Sbjct: 62  ERLEKANLSTRAKLIQDGHEKMQTYVKEE-AKVIIFNFGY 100


>gi|257888992|ref|ZP_05668645.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
 gi|257825055|gb|EEV51978.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
          Length = 189

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 14/89 (15%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQ 75
           H   LL++++      PG  ++DAT G  G+   F         +V + D    A+   +
Sbjct: 11  HT--LLQEIL-----QPGDHVVDATMGN-GHDTVFLAEHIGKTGHVYSFDIQQQAIDATR 62

Query: 76  ETMRDY--KEQFSLFQATFSQLQDYVPDK 102
           E +  +  +E+ SLF      L + + ++
Sbjct: 63  EKLEQHQLEERVSLFLQGHETLGEVIAEQ 91


>gi|52786912|ref|YP_092741.1| YtqB [Bacillus licheniformis ATCC 14580]
 gi|52349414|gb|AAU42048.1| YtqB [Bacillus licheniformis ATCC 14580]
          Length = 225

 Score = 49.0 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 9/86 (10%)

Query: 36  PGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMR-DYKEQFSLFQA 90
            G +++DAT G  G+   F         +V A D    A+    E +  +YK++ +L Q 
Sbjct: 51  EGDIVIDATMGN-GHDTHFLAELVGESGHVYAFDIQEAALMNTAERLGNEYKDRVTLIQK 109

Query: 91  TFSQLQDYVPDK---GVDGVVFDLGV 113
           +  +L   +PD     V   VF+LG 
Sbjct: 110 SHDELTTSLPDDISGKVAAAVFNLGY 135


>gi|78224015|ref|YP_385762.1| putative rRNA methylase [Geobacter metallireducens GS-15]
 gi|78195270|gb|ABB33037.1| putative rRNA methylase [Geobacter metallireducens GS-15]
          Length = 1128

 Score = 48.6 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 8/84 (9%)

Query: 35   APGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK--EQFSLF 88
             PG   +DAT G  G+   F          V A D    A++  +E + +    ++ +L 
Sbjct: 959  RPGDRAVDATCGN-GHDTLFLAQLVGPQGRVWAFDVQAKALAATEERLAEAGCRDRVALV 1017

Query: 89   QATFSQLQDYVPDKGVDGVVFDLG 112
                 +L + V    V  VVF+LG
Sbjct: 1018 HGGHERLAEVVTGP-VRAVVFNLG 1040


>gi|293377844|ref|ZP_06624028.1| conserved hypothetical protein [Enterococcus faecium PC4.1]
 gi|292643528|gb|EFF61654.1| conserved hypothetical protein [Enterococcus faecium PC4.1]
          Length = 188

 Score = 48.6 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 14/89 (15%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQ 75
           H   LL++++      PG  ++DAT G  G+   F         +V + D    A+   +
Sbjct: 10  HT--LLQEIL-----QPGDHVVDATMGN-GHDTVFLAEHIGKTGHVYSFDIQQQAIDATR 61

Query: 76  ETMRDY--KEQFSLFQATFSQLQDYVPDK 102
           E +  +  +E+ SLF      L + + ++
Sbjct: 62  EKLEQHQLEERVSLFLQGHETLGEVIAEQ 90


>gi|227550265|ref|ZP_03980314.1| rRNA methylase [Enterococcus faecium TX1330]
 gi|227180590|gb|EEI61562.1| rRNA methylase [Enterococcus faecium TX1330]
          Length = 189

 Score = 48.6 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 14/89 (15%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQ 75
           H   LL++++      PG  ++DAT G  G+   F         +V + D    A+   +
Sbjct: 10  HT--LLQEIL-----QPGDHVVDATMGN-GHDTVFLAEHIGKTGHVYSFDIQQQAIDATR 61

Query: 76  ETMRDY--KEQFSLFQATFSQLQDYVPDK 102
           E +  +  +E+ SLF      L + + ++
Sbjct: 62  EKLEQHQLEERVSLFLQGHETLGEVIAEQ 90


>gi|170039575|ref|XP_001847606.1| prip interacting protein, pimt [Culex quinquefasciatus]
 gi|167863124|gb|EDS26507.1| prip interacting protein, pimt [Culex quinquefasciatus]
          Length = 1016

 Score = 48.6 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 42/117 (35%), Gaps = 14/117 (11%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96
           +++D   G GG S       + VIA+D DP  +   +     Y   ++       F  L 
Sbjct: 860 LVVDGFCGCGGNSIQLAFTCNQVIAIDIDPKKIEMAKHNAAVYGVADRIEFIVGDFLALA 919

Query: 97  DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANV 153
           D +     D V       S          S+ K    D+  S   + A++++ +A  
Sbjct: 920 DRLQ---ADAVFL-----SPPWGGP----SYLKDEVYDLEASLIPVPATELMRKARQ 964


>gi|261213231|ref|ZP_05927513.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. RC341]
 gi|260837505|gb|EEX64208.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. RC341]
          Length = 426

 Score = 48.6 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85
            +  L P  G++ILD     GG +    +   GS V+A+D D   +   QE ++  +   
Sbjct: 235 ALTYLAPKAGELILDCCAAPGGKTAHILEHTPGSQVVAIDCDETRLKRVQENLQRLQLNA 294

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            +        Q +   +  D ++ D   S
Sbjct: 295 QVICGDARYPQQWWQGEQFDRILLDAPCS 323


>gi|225023758|ref|ZP_03712950.1| hypothetical protein EIKCOROL_00622 [Eikenella corrodens ATCC
           23834]
 gi|224943640|gb|EEG24849.1| hypothetical protein EIKCOROL_00622 [Eikenella corrodens ATCC
           23834]
          Length = 220

 Score = 48.6 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 8/84 (9%)

Query: 36  PGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYKE--QFSLFQ 89
            G + +DAT G  G+   F       G  V A D  P A++  Q  ++  +E  Q  L  
Sbjct: 45  EGGIAVDATAGN-GHDTLFLAQCVGSGGRVYAFDIQPQALAATQARLQAAREERQVRLIS 103

Query: 90  ATFSQLQDYVPDKGVDGVVFDLGV 113
           A+ + L  YV +  V  +VF+ G 
Sbjct: 104 ASHADLTHYVNEP-VHSIVFNCGY 126


>gi|207112007|ref|ZP_03246169.1| S-adenosyl-methyltransferase MraW [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 33

 Score = 48.6 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)

Query: 118 IDCGDRGFSFQKSGPLDMRMSC-SGISASDVVN 149
           +D  +RGFS++   PLDMRM     ++A D+VN
Sbjct: 1   LDTAERGFSYRVDAPLDMRMDQRQKMTARDIVN 33


>gi|134298946|ref|YP_001112442.1| putative rRNA methylase [Desulfotomaculum reducens MI-1]
 gi|134051646|gb|ABO49617.1| putative rRNA methylase [Desulfotomaculum reducens MI-1]
          Length = 185

 Score = 48.6 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/112 (14%), Positives = 40/112 (35%), Gaps = 21/112 (18%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIAL 64
           M++ + H         L +++       G + +D T G  G+              V A 
Sbjct: 1   MAAKLGHDF-------LAEIL-----RNGDLAVDGTMGN-GHDTLLLAQLVGSQGKVYAF 47

Query: 65  DRDPFAVSCGQETMRD---YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
           D    A+   ++ +     + ++  L       ++ Y+ +  +   +++LG 
Sbjct: 48  DIQEQAIDNTRQRLVSQNLFDQRVKLIHDGHQNIKHYI-EHPIRAAIYNLGY 98


>gi|157693437|ref|YP_001487899.1| rRNA methyltransferase [Bacillus pumilus SAFR-032]
 gi|157682195|gb|ABV63339.1| possible rRNA methyltransferase [Bacillus pumilus SAFR-032]
          Length = 191

 Score = 48.6 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 38/95 (40%), Gaps = 9/95 (9%)

Query: 26  EKVIALLNPAPGKVILDATFGAGGY-SRSFCKM---GSNVIALDRDPFAVSCGQETMRDY 81
           ++++       G +++DAT G  G+ +     +      V A D    A+   ++ + + 
Sbjct: 11  KELLER-ACQKGDIVIDATMGN-GHDTLYLADLVGPDGQVFAFDVQEEAIEQTRKRLGEG 68

Query: 82  KEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGV 113
                L      +L  ++P      + G VF+LG 
Sbjct: 69  YPYVHLIHDGHEKLAHHLPRDVYEQISGAVFNLGY 103


>gi|87240722|gb|ABD32580.1| SAM (and some other nucleotide) binding motif; WW/Rsp5/WWP
           [Medicago truncatula]
          Length = 681

 Score = 48.6 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 2/70 (2%)

Query: 37  GKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQ 94
           G  ++D   GAGG +  F +   +V+A+D DP  +   +     Y   +Q       F  
Sbjct: 515 GGTLIDCFTGAGGNAIQFAQRCRHVVAIDIDPLKIDYARHNAAIYRVDDQIDFIAGDFFV 574

Query: 95  LQDYVPDKGV 104
           L   +    V
Sbjct: 575 LAPKLKADTV 584


>gi|206601448|gb|EDZ37936.1| biotin synthesis protein/methyltransferase [Leptospirillum sp.
           Group II '5-way CG']
          Length = 228

 Score = 48.6 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/83 (14%), Positives = 28/83 (33%), Gaps = 11/83 (13%)

Query: 43  ATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP 100
            T      S    +      V+A D     +   +  +  +  +F +FQ  +      + 
Sbjct: 57  GTL-----SELVLERYPQSEVLAFDLTQEMLDSAKVRLSRFGSRFRIFQGDYRN--KELF 109

Query: 101 DKGVDGVVFDLGVSSMQIDCGDR 123
             G D ++   G++   +   +R
Sbjct: 110 GVGYDAILA--GMTLHHLTDSER 130


>gi|197334196|ref|YP_002157328.1| ribosomal RNA small subunit methyltransferase B [Vibrio fischeri
           MJ11]
 gi|197315686|gb|ACH65133.1| ribosomal RNA small subunit methyltransferase B [Vibrio fischeri
           MJ11]
          Length = 451

 Score = 48.6 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 34/87 (39%), Gaps = 2/87 (2%)

Query: 30  ALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQFSL 87
             L P  G++ILD     GG +    +    +NV+A+D D   +    E +     +  +
Sbjct: 262 EYLQPQNGELILDCCAAPGGKTAHILERTQDTNVVAIDCDETRLKRVYENLERLNLKAQV 321

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGVS 114
                   +++   +  D ++ D   S
Sbjct: 322 ICGDARHPEEWWKGEQFDRILLDAPCS 348


>gi|152977113|ref|YP_001376630.1| putative rRNA methylase [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|152025865|gb|ABS23635.1| putative rRNA methylase [Bacillus cytotoxicus NVH 391-98]
          Length = 190

 Score = 48.6 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 28/90 (31%), Gaps = 10/90 (11%)

Query: 33  NPAPGKVILDATFGAGGYSR----SFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFS 86
               G   +DAT G  G+              V   D    A+      +++    E+  
Sbjct: 17  AVKEGDYAVDATLGN-GHDACFLAEIVGENGKVFGFDIQKEAIENSTARLKEKGLEERTV 75

Query: 87  LFQATFSQLQDYVP---DKGVDGVVFDLGV 113
               +   L   +P      V G +F+LG 
Sbjct: 76  FIHDSHDTLLSVLPAEAKGKVTGAIFNLGY 105


>gi|310658196|ref|YP_003935917.1| RNA methylase [Clostridium sticklandii DSM 519]
 gi|308824974|emb|CBH21012.1| putative RNA methylase (modular protein) [Clostridium sticklandii]
          Length = 331

 Score = 48.6 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 4/83 (4%)

Query: 34  PAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQA 90
              G  ++DAT G G  +    +       V A D D  AV   +E ++    Q      
Sbjct: 18  IKSGDKVVDATLGNGNDAEFLAQIVGEQGRVYAFDIDSDAVEACKERLQSKYLQIDFILD 77

Query: 91  TFSQLQDYVPDKGVDGVVFDLGV 113
           +   L  YV D  +   +F+LG 
Sbjct: 78  SHENLNIYVKDT-ISAAIFNLGY 99


>gi|224136780|ref|XP_002326943.1| predicted protein [Populus trichocarpa]
 gi|222835258|gb|EEE73693.1| predicted protein [Populus trichocarpa]
          Length = 215

 Score = 48.6 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 2/70 (2%)

Query: 37  GKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQ 94
           G  I+D   G GG +  F +   +VIA+D DP  +         Y   +Q    +  F  
Sbjct: 52  GDTIIDCFTGVGGNAIQFAQRYKHVIAIDIDPKKIDYAFHNASIYGVSDQIDFIEGDFFA 111

Query: 95  LQDYVPDKGV 104
           L   +    V
Sbjct: 112 LASKLKADSV 121


>gi|312882737|ref|ZP_07742472.1| ribosomal RNA small subunit methyltransferase B [Vibrio
           caribbenthicus ATCC BAA-2122]
 gi|309369595|gb|EFP97112.1| ribosomal RNA small subunit methyltransferase B [Vibrio
           caribbenthicus ATCC BAA-2122]
          Length = 426

 Score = 48.3 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 35/87 (40%), Gaps = 2/87 (2%)

Query: 30  ALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQFSL 87
             LN   G++ILD     GG +    +   N  V+A+D D   +    + ++  +   ++
Sbjct: 237 DFLNAQDGELILDCCAAPGGKTAHILERAPNCKVVAIDCDDTRLQRVHDNLQRLQLNATV 296

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGVS 114
                   +++   +  D ++ D   S
Sbjct: 297 ICGDARNPEEWWQGEKFDRILLDAPCS 323


>gi|219848992|ref|YP_002463425.1| methyltransferase type 11 [Chloroflexus aggregans DSM 9485]
 gi|219543251|gb|ACL24989.1| Methyltransferase type 11 [Chloroflexus aggregans DSM 9485]
          Length = 241

 Score = 48.3 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 8/108 (7%)

Query: 1   MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN 60
           +  +  + + +  H+   +  P +L    +LL    GK +LDA  G G YS      G+ 
Sbjct: 17  LAERYAEQVLTKPHNAYYE-RPAML----SLLPDVRGKRVLDAGCGPGVYSELLLDRGAE 71

Query: 61  VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVV 108
           VIA+D +P  V    + ++    +  + QA   Q   ++P    D V+
Sbjct: 72  VIAIDANPKMVQLAHQRLQ---NRAQVLQADLGQPLTFLPTASFDLVI 116


>gi|262166812|ref|ZP_06034549.1| ribosomal RNA small subunit methyltransferase B [Vibrio mimicus
           VM223]
 gi|262026528|gb|EEY45196.1| ribosomal RNA small subunit methyltransferase B [Vibrio mimicus
           VM223]
          Length = 426

 Score = 48.3 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQF 85
            +  L P  G++ILD     GG +    +   +  V+A+D D   +   QE ++  K   
Sbjct: 235 ALTYLTPKAGELILDCCAAPGGKTAHILEHTPDSQVVAIDCDETRLKRVQENLQRLKLNA 294

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            +        QD+   +  D ++ D   S
Sbjct: 295 QVICGDARYPQDWWQGEQFDRILLDAPCS 323


>gi|323488395|ref|ZP_08093642.1| SAM-dependent methyltransferase [Planococcus donghaensis MPA1U2]
 gi|323397902|gb|EGA90701.1| SAM-dependent methyltransferase [Planococcus donghaensis MPA1U2]
          Length = 187

 Score = 48.3 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 12/94 (12%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCK----MGSNVIALDRDPFAVSCGQETMR 79
           LLE+ +       G V++D T G  G+   F          V A D    A+   +E ++
Sbjct: 13  LLEQAV-----TSGDVVIDGTAGN-GHDTHFLASLTGANGKVFAFDIQAEAIHATRERVQ 66

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
           ++ +   L   + ++++DYV +  +   VF+LG 
Sbjct: 67  EF-DHIELIHDSHAKIKDYVTEP-IAAAVFNLGY 98


>gi|295399585|ref|ZP_06809567.1| putative rRNA methylase [Geobacillus thermoglucosidasius C56-YS93]
 gi|312109860|ref|YP_003988176.1| rRNA methylase [Geobacillus sp. Y4.1MC1]
 gi|294979051|gb|EFG54647.1| putative rRNA methylase [Geobacillus thermoglucosidasius C56-YS93]
 gi|311214961|gb|ADP73565.1| rRNA methylase [Geobacillus sp. Y4.1MC1]
          Length = 191

 Score = 48.3 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 10/91 (10%)

Query: 32  LNPAPGKVILDATFGAGGY-SRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK--EQF 85
           L    G + +DAT G  G+ +    +      +V   D    A+S     ++++   ++ 
Sbjct: 16  LAVNEGDIAVDATVGN-GHDTLYLAQRVGESGHVFGFDIQKEAISATSARLQEHNMLQRV 74

Query: 86  SLFQATFSQLQDYVPDK---GVDGVVFDLGV 113
           +LFQA+  QL + +P      + G +F+LG 
Sbjct: 75  TLFQASHDQLIEKIPAHYHGRITGAMFNLGY 105


>gi|332522836|ref|ZP_08399088.1| putative rRNA methylase [Streptococcus porcinus str. Jelinkova 176]
 gi|332314100|gb|EGJ27085.1| putative rRNA methylase [Streptococcus porcinus str. Jelinkova 176]
          Length = 182

 Score = 48.3 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 8/90 (8%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-E 83
           L+ ++         +++DAT G G  +  F      + A D    A+   +E ++  + E
Sbjct: 12  LDAILD-----TNSILVDATMGNGNDTLYFAPKVKRLYAFDVQEKALQVTREKLQKAQLE 66

Query: 84  QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
              L Q    ++ DY+    VD  +F+LG 
Sbjct: 67  NVQLIQDGHEKVDDYLDQ--VDAAIFNLGY 94


>gi|315223317|ref|ZP_07865178.1| rRNA methylase family protein [Streptococcus anginosus F0211]
 gi|315187749|gb|EFU21503.1| rRNA methylase family protein [Streptococcus anginosus F0211]
          Length = 182

 Score = 48.3 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 5/82 (6%)

Query: 34  PAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQFSLFQAT 91
                +++DAT G  G+ +    ++   V A D    A+    + + + K +   LF   
Sbjct: 16  ITKEDIVVDATMGN-GHDTLFLARLAKKVYAFDIQEQAIEQTTKRLAEAKLDNVELFLTG 74

Query: 92  FSQLQDYVPDKGVDGVVFDLGV 113
              +  YV    +   +F+LG 
Sbjct: 75  HENVDQYVE--SIKAAIFNLGY 94


>gi|59713152|ref|YP_205928.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Vibrio fischeri
           ES114]
 gi|59481253|gb|AAW87040.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Vibrio fischeri
           ES114]
          Length = 426

 Score = 48.3 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 33/87 (37%), Gaps = 2/87 (2%)

Query: 30  ALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQFSL 87
             L P  G++ILD     GG +    +   +  V+A+D D   +    E +     +  +
Sbjct: 237 EYLQPQNGELILDCCAAPGGKTAHILERTQDTSVVAIDCDETRLKRVYENLERLNLKAQV 296

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGVS 114
                   +++   +  D ++ D   S
Sbjct: 297 ICGDARHPEEWWKGEQFDRILLDAPCS 323


>gi|157374425|ref|YP_001473025.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella sediminis
           HAW-EB3]
 gi|226725393|sp|A8FSS4|RUMA_SHESH RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|157316799|gb|ABV35897.1| RNA methyltransferase, TrmA family [Shewanella sediminis HAW-EB3]
          Length = 442

 Score = 48.3 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 2/89 (2%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82
           ++++ +  L+  P + +LD   G G +S    K G+ VI ++  P  V   +E   D   
Sbjct: 285 MVKQAVDWLSVKPNERVLDLFCGVGNFSLPLAKSGAEVIGVEGVPEMVKQARENAADSGL 344

Query: 83  EQFSLFQATFS-QLQDYVPDKGVDGVVFD 110
           +  S F    S  L        VD ++ D
Sbjct: 345 DNVSFFHTDLSADLSKETWLGKVDKLLLD 373


>gi|15643290|ref|NP_228334.1| hypothetical protein TM0524 [Thermotoga maritima MSB8]
 gi|4981037|gb|AAD35609.1|AE001728_10 conserved hypothetical protein [Thermotoga maritima MSB8]
          Length = 254

 Score = 48.3 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 51/149 (34%), Gaps = 31/149 (20%)

Query: 29  IALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDR----------DPFAVSCG 74
           I  L P   +++LD TFG G  S +           VI L+                   
Sbjct: 85  IESLQPEGNEIVLDTTFGLG--SEAILMAAFLPEGKVIGLEGSIHIYTIVKYGMENFETD 142

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
              ++D  ++  L+ A F +     PD   D V  D        +       ++ S    
Sbjct: 143 IRWLKDALKRIELYHANFKEYIRSQPDNSFDVVYCD-----PMFENPV----YESSA--- 190

Query: 135 MRMSCSGISA-SDVVNQANVKDLTRILGI 162
             M+     A  D VN+ +++++ RI   
Sbjct: 191 --MNPLRPFAVYDTVNEEDIEEMLRIAKK 217


>gi|299469608|emb|CBN76462.1| methylase-related [Ectocarpus siliculosus]
          Length = 451

 Score = 47.9 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 20/115 (17%)

Query: 11  SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGY-SRSF-----CKMG-SNVIA 63
            A  H+   H   LL + +A     PG  +LD T G  G+ S         K G  ++  
Sbjct: 261 PAASHSHMAH---LLWRQVAG----PGDTVLDCTAGN-GHDSLELAKIVALKDGVGSLYV 312

Query: 64  LDRDPFAVSCGQETMRD-----YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
           +D    A+   +E +R        ++ +L    F ++   +    V  VV++LG 
Sbjct: 313 MDVQERAIEATRERLRSELGELALKRSTLINGNFREMPAELEPLSVQLVVYNLGW 367


>gi|170758569|ref|YP_001785692.1| hypothetical protein CLK_3543 [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169405558|gb|ACA53969.1| conserved hypothetical protein [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 188

 Score = 47.9 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 7/82 (8%)

Query: 37  GKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQAT 91
           G + +D T G  G+              VI+ D    A++  +E +R++  +  +L    
Sbjct: 24  GDIAVDCTLGK-GHDTILLANLVGNKGKVISFDIQKEAINKTKEKLREFDYKNITLINDG 82

Query: 92  FSQLQDYVPDKGVDGVVFDLGV 113
              L  ++ +  V   +F+LG 
Sbjct: 83  HENLDRHIQE-KVKLFIFNLGY 103


>gi|168177698|ref|ZP_02612362.1| conserved hypothetical protein [Clostridium botulinum NCTC 2916]
 gi|182671192|gb|EDT83166.1| conserved hypothetical protein [Clostridium botulinum NCTC 2916]
          Length = 188

 Score = 47.9 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 7/82 (8%)

Query: 37  GKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQAT 91
           G + +D T G  G+              VI+ D    A++  +E +R++  +  +L    
Sbjct: 24  GDIAVDCTLGK-GHDTILLANLVGNKGKVISFDIQKEAINKTKEKLREFDYKNITLINDG 82

Query: 92  FSQLQDYVPDKGVDGVVFDLGV 113
              L  ++ +  V   +F+LG 
Sbjct: 83  HENLDRHIQE-KVKLFIFNLGY 103


>gi|148378358|ref|YP_001252899.1| hypothetical protein CBO0355 [Clostridium botulinum A str. ATCC
           3502]
 gi|153931757|ref|YP_001382757.1| hypothetical protein CLB_0398 [Clostridium botulinum A str. ATCC
           19397]
 gi|153936917|ref|YP_001386308.1| hypothetical protein CLC_0413 [Clostridium botulinum A str. Hall]
 gi|226947586|ref|YP_002802677.1| hypothetical protein CLM_0423 [Clostridium botulinum A2 str. Kyoto]
 gi|148287842|emb|CAL81908.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
           3502]
 gi|152927801|gb|ABS33301.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
           19397]
 gi|152932831|gb|ABS38330.1| conserved hypothetical protein [Clostridium botulinum A str. Hall]
 gi|226842840|gb|ACO85506.1| conserved hypothetical protein [Clostridium botulinum A2 str.
           Kyoto]
          Length = 188

 Score = 47.9 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 7/82 (8%)

Query: 37  GKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQAT 91
           G + +D T G  G+              VI+ D    A++  +E +R++  +  +L    
Sbjct: 24  GDIAVDCTLGK-GHDTILLANLVGNKGKVISFDIQKEAINKTREKLREFDYKNITLINDG 82

Query: 92  FSQLQDYVPDKGVDGVVFDLGV 113
              L  ++ +  V   +F+LG 
Sbjct: 83  HENLDKHIQE-KVKLFIFNLGY 103


>gi|196250012|ref|ZP_03148707.1| putative rRNA methylase [Geobacillus sp. G11MC16]
 gi|196210526|gb|EDY05290.1| putative rRNA methylase [Geobacillus sp. G11MC16]
          Length = 190

 Score = 47.9 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 45/99 (45%), Gaps = 15/99 (15%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGY-SRSFCKM---GSNVIALDRDPFAVSCGQETMR 79
           LLE+ +       G + +DAT G  G+ +    ++     +V   D  P A++     + 
Sbjct: 13  LLERAV-----TEGDLAIDATVGN-GHDTVYLAELVGDSGHVFGFDIQPEAIAATTARLS 66

Query: 80  DYK--EQFSLFQATFSQLQDYVPDK---GVDGVVFDLGV 113
           +    ++ +LFQ + S+L   +P      + G VF+LG 
Sbjct: 67  EQGLHDRVTLFQQSHSELLTALPSDVYGRIAGAVFNLGY 105


>gi|187777042|ref|ZP_02993515.1| hypothetical protein CLOSPO_00587 [Clostridium sporogenes ATCC
           15579]
 gi|187773970|gb|EDU37772.1| hypothetical protein CLOSPO_00587 [Clostridium sporogenes ATCC
           15579]
          Length = 188

 Score = 47.9 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 7/82 (8%)

Query: 37  GKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQAT 91
           G + +D T G  G+              VI+ D    A+   +E ++D   +  +L    
Sbjct: 24  GDIAVDCTLGK-GHDTILLANLVGNEGKVISFDIQKEAIDKTKEKLKDIDYKNITLINDG 82

Query: 92  FSQLQDYVPDKGVDGVVFDLGV 113
              L  Y+ +  V   +F+LG 
Sbjct: 83  HENLDRYIQE-KVKLFIFNLGY 103


>gi|302142307|emb|CBI19510.3| unnamed protein product [Vitis vinifera]
          Length = 683

 Score = 47.9 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 2/69 (2%)

Query: 38  KVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQL 95
            +I+D   G GG +  F +   +VIA+D DP  +   Q     Y   ++    +     L
Sbjct: 516 GIIVDCFTGVGGNAIQFAQRSKHVIAIDIDPKKIEYAQHNAAIYGVDDRIDFIKGDSFLL 575

Query: 96  QDYVPDKGV 104
              +    V
Sbjct: 576 ASTLKADTV 584


>gi|225458633|ref|XP_002282801.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 780

 Score = 47.9 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 2/69 (2%)

Query: 38  KVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQL 95
            +I+D   G GG +  F +   +VIA+D DP  +   Q     Y   ++    +     L
Sbjct: 613 GIIVDCFTGVGGNAIQFAQRSKHVIAIDIDPKKIEYAQHNAAIYGVDDRIDFIKGDSFLL 672

Query: 96  QDYVPDKGV 104
              +    V
Sbjct: 673 ASTLKADTV 681


>gi|260771086|ref|ZP_05880014.1| ribosomal RNA small subunit methyltransferase B [Vibrio furnissii
           CIP 102972]
 gi|260613975|gb|EEX39166.1| ribosomal RNA small subunit methyltransferase B [Vibrio furnissii
           CIP 102972]
          Length = 426

 Score = 47.9 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 33/89 (37%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85
            +  L P  G++ILD     GG +    +   G +V+A+D D   +    + ++      
Sbjct: 235 ALHYLQPQDGELILDCCAAPGGKTAHILERTHGCDVVAIDCDDTRLKRVHDNLKRLNLSA 294

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            +        + +      D ++ D   S
Sbjct: 295 KVVCGDARYPEQWWQGGQFDRILLDAPCS 323


>gi|168029694|ref|XP_001767360.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162681424|gb|EDQ67851.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 225

 Score = 47.9 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 2/71 (2%)

Query: 36  PGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFS 93
            G +I+DA  G GG +  F   G +VIA+D DP  +   +     Y   +        F 
Sbjct: 48  SGGLIVDAFTGVGGNAIQFALRGDHVIAIDIDPLKIEYARHNAAIYGVVDHIEFIVGDFF 107

Query: 94  QLQDYVPDKGV 104
           ++   +    +
Sbjct: 108 KIAPNLKADSI 118


>gi|160947166|ref|ZP_02094333.1| hypothetical protein PEPMIC_01098 [Parvimonas micra ATCC 33270]
 gi|158446300|gb|EDP23295.1| hypothetical protein PEPMIC_01098 [Parvimonas micra ATCC 33270]
          Length = 183

 Score = 47.9 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 33/82 (40%), Gaps = 4/82 (4%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91
               K+ +D T G G  S++  ++     +   D    A+   ++ ++ Y   F L    
Sbjct: 19  VKDVKIAVDMTVGNGFDSKNILEILKPEKLYCFDIQQEALDNSKKLLKQY-SNFELILEN 77

Query: 92  FSQLQDYVPDKGVDGVVFDLGV 113
                 +V +  +D  +++LG 
Sbjct: 78  HKNFDKFVKE-NIDFAMYNLGY 98


>gi|229087300|ref|ZP_04219442.1| hypothetical protein bcere0022_38710 [Bacillus cereus Rock3-44]
 gi|228696002|gb|EEL48845.1| hypothetical protein bcere0022_38710 [Bacillus cereus Rock3-44]
          Length = 177

 Score = 47.9 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 10/90 (11%)

Query: 33  NPAPGKVILDATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFS 86
               G   +DAT G  G+              V   D    A+      +++    E+  
Sbjct: 4   AVTEGDYAVDATLGN-GHDTCFLAEIVGENGKVFGFDIQKEAIENSTVRLKEKGVEERTV 62

Query: 87  LFQATFSQLQDYVPDK---GVDGVVFDLGV 113
           L   +   L D +P++    V G +F+LG 
Sbjct: 63  LVHDSHDTLLDVLPEEATGKVTGAIFNLGY 92


>gi|315178589|gb|ADT85503.1| cytosine-C5-methylase [Vibrio furnissii NCTC 11218]
          Length = 426

 Score = 47.9 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 33/89 (37%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85
            +  L P  G++ILD     GG +    +   G +V+A+D D   +    + ++      
Sbjct: 235 ALHYLQPQDGELILDCCAAPGGKTAHILERTHGCDVVAIDCDDTRLKRVHDNLKRLNLSA 294

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            +        + +      D ++ D   S
Sbjct: 295 KVVCGDARYPEQWWQGGQFDRILLDAPCS 323


>gi|222152593|ref|YP_002561768.1| rRNA methylase [Streptococcus uberis 0140J]
 gi|222113404|emb|CAR41065.1| putative rRNA methylase [Streptococcus uberis 0140J]
          Length = 181

 Score = 47.9 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 3/81 (3%)

Query: 37  GKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQL 95
             + +DAT G G  +  F  +   V A D    A+S  Q+ +     E   L       +
Sbjct: 19  DSIFVDATVGNGNDTLYFAPLVKKVYAFDIQKEAISRTQQKLEANGIENVILIHDGHENV 78

Query: 96  QDYVPDKGVDGVVFDLGVSSM 116
             YV D  +D  +F+LG    
Sbjct: 79  NHYVQD--IDAAIFNLGYLPH 97


>gi|321312586|ref|YP_004204873.1| putative RNA methylase [Bacillus subtilis BSn5]
 gi|320018860|gb|ADV93846.1| putative RNA methylase [Bacillus subtilis BSn5]
          Length = 194

 Score = 47.9 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 9/86 (10%)

Query: 36  PGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRD-YKEQFSLFQA 90
            G +++DAT G  G+   F         +V A D    AV+  +E + D Y+ + +LFQ 
Sbjct: 20  EGDIVVDATMGN-GHDTQFLAELVGENGHVYAFDIQESAVANTKERLGDMYQARTTLFQK 78

Query: 91  TFSQLQDYVP---DKGVDGVVFDLGV 113
           +  ++ + +P      V   VF+LG 
Sbjct: 79  SHDKIAESLPPETHGKVAAAVFNLGY 104


>gi|281411743|ref|YP_003345822.1| hypothetical protein Tnap_0304 [Thermotoga naphthophila RKU-10]
 gi|281372846|gb|ADA66408.1| conserved hypothetical protein [Thermotoga naphthophila RKU-10]
          Length = 254

 Score = 47.9 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 51/149 (34%), Gaps = 31/149 (20%)

Query: 29  IALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDR----------DPFAVSCG 74
           I  L P   +++LD TFG G  S +           VI L+                   
Sbjct: 85  IESLQPEGNEIVLDTTFGLG--SEAILMAAFLPEGKVIGLEGSIHIYTIVKYGMENFETD 142

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
              ++D  ++  L+ A F +     PD   D V  D        +       ++ S    
Sbjct: 143 IRWLKDALKRIELYHANFKEYIRSQPDNSFDVVYCD-----PMFENPV----YESSA--- 190

Query: 135 MRMSCSGISA-SDVVNQANVKDLTRILGI 162
             M+     A  D VN+ +++++ RI   
Sbjct: 191 --MNPLRPFAVYDTVNEEDIEEMLRIAKK 217


>gi|143582026|sp|Q0HXI0|RUMA_SHESR RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
          Length = 449

 Score = 47.5 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 2/89 (2%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82
           ++ + +  L P PG+ ILD   G G +S    K+G+ VI ++  P  VS  +E       
Sbjct: 291 MVAQALDWLAPQPGERILDLFCGMGNFSLPLAKLGAEVIGVEGVPEMVSQARENAAANGL 350

Query: 83  EQFSLFQATFSQLQDYVPDKG-VDGVVFD 110
              + +    S      P  G +D ++ D
Sbjct: 351 SNLTFYHGDLSADLSCEPWMGKIDKLLLD 379


>gi|114046682|ref|YP_737232.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella sp. MR-7]
 gi|113888124|gb|ABI42175.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shewanella sp. MR-7]
          Length = 463

 Score = 47.5 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 2/89 (2%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82
           ++ + +  L P PG+ ILD   G G +S    K+G+ VI ++  P  VS  +E       
Sbjct: 305 MVAQALDWLAPQPGERILDLFCGMGNFSLPLAKLGAEVIGVEGVPEMVSQARENAAANGL 364

Query: 83  EQFSLFQATFSQLQDYVPDKG-VDGVVFD 110
              + +    S      P  G +D ++ D
Sbjct: 365 SNLTFYHGDLSADLSCEPWMGKIDKLLLD 393


>gi|145629992|ref|ZP_01785774.1| hypothetical protein CGSHi22421_08073 [Haemophilus influenzae
           R3021]
 gi|144984273|gb|EDJ91696.1| hypothetical protein CGSHi22421_08073 [Haemophilus influenzae
           R3021]
          Length = 254

 Score = 47.5 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 65/174 (37%), Gaps = 29/174 (16%)

Query: 22  PVLLEKVIA---LLNPAP---GKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCG 74
           P+ L ++I    +L+  P   GK +LD   G GG+ + + + G + VI  D     +   
Sbjct: 24  PISLNEIIEKPTMLSLLPNLKGKKLLDLGCGTGGHLQLYLERGAAKVIGTDLSEKMLEQA 83

Query: 75  QETMR---DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           ++ ++    +  +FSL+     +L + +         FD+  SS         F+F    
Sbjct: 84  EKDLQKCGQFSGRFSLYHLPMEKLAELLESH------FDVITSS---------FAFHYIE 128

Query: 132 PLDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
                +S     +S++  +  +    +T        E+         V  R + 
Sbjct: 129 NFPTLLSTIHDKLSSNGTLIFSQEHPITTCHKE--GERWEKNDKKQQVAYRLNH 180


>gi|143581977|sp|Q0HL77|RUMA_SHESM RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
          Length = 449

 Score = 47.5 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 2/89 (2%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82
           ++ + +  L P PG+ ILD   G G +S    K+G+ VI ++  P  VS  +E       
Sbjct: 291 MVAQALDWLAPQPGERILDLFCGMGNFSLPLAKLGAEVIGVEGVPDMVSQARENAAANGL 350

Query: 83  EQFSLFQATFSQLQDYVPDKG-VDGVVFD 110
              + +    S      P  G +D ++ D
Sbjct: 351 SNLTFYHGDLSADLSCEPWMGKIDKLLLD 379


>gi|113969454|ref|YP_733247.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella sp. MR-4]
 gi|113884138|gb|ABI38190.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shewanella sp. MR-4]
          Length = 463

 Score = 47.5 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 2/89 (2%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82
           ++ + +  L P PG+ ILD   G G +S    K+G+ VI ++  P  VS  +E       
Sbjct: 305 MVAQALDWLAPQPGERILDLFCGMGNFSLPLAKLGAEVIGVEGVPDMVSQARENAAANGL 364

Query: 83  EQFSLFQATFSQLQDYVPDKG-VDGVVFD 110
              + +    S      P  G +D ++ D
Sbjct: 365 SNLTFYHGDLSADLSCEPWMGKIDKLLLD 393


>gi|149190437|ref|ZP_01868708.1| Sun protein [Vibrio shilonii AK1]
 gi|148835691|gb|EDL52657.1| Sun protein [Vibrio shilonii AK1]
          Length = 425

 Score = 47.5 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQF 85
            I  L P  G++ILD     GG +    +    S V+A+D D   +    + ++  K Q 
Sbjct: 235 SINYLEPKDGELILDCCAAPGGKTAHILERTKDSQVVAIDCDETRLKRVHDNLKRLKLQA 294

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            +         ++   +  D ++ D   S
Sbjct: 295 KVVCGDARTPSEWWQGEQFDRILLDAPCS 323


>gi|260599608|ref|YP_003212179.1| 16S rRNA methyltransferase B [Cronobacter turicensis z3032]
 gi|260218785|emb|CBA34133.1| Ribosomal RNA small subunit methyltransferase B [Cronobacter
           turicensis z3032]
          Length = 425

 Score = 47.5 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85
            + LL P  G+ ILD     GG +    +     NV+A+D D   +S   E ++  K + 
Sbjct: 234 CVELLAPQNGETILDLCAAPGGKTTHILEAAPQANVLAVDVDAQRISRVYENLKRVKMRA 293

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            +          +  D   D ++ D   S
Sbjct: 294 EVKVGDGRFPATWCGDMQFDRILLDAPCS 322


>gi|81429048|ref|YP_396048.1| putative methyltransferase [Lactobacillus sakei subsp. sakei 23K]
 gi|78610690|emb|CAI55741.1| Putative methyltransferase [Lactobacillus sakei subsp. sakei 23K]
          Length = 186

 Score = 47.5 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 45/122 (36%), Gaps = 19/122 (15%)

Query: 33  NPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETM--RDYKEQFSL 87
              PG V++DAT G G  +    +      +V   D    A++  Q+ +   +  +Q SL
Sbjct: 17  AIRPGDVVIDATVGHGDDTLFLAEKVADYGHVYGFDIQKEALATCQKRLTTANLSQQVSL 76

Query: 88  FQATFSQLQDYVP-DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASD 146
                 ++   +P D  V   +F LG             S       D+ +  + ISA  
Sbjct: 77  INQGHERIITALPADLKVQAAIFSLG-------------SLSSETSQDVTLPNTTISAYH 123

Query: 147 VV 148
            V
Sbjct: 124 QV 125


>gi|322825679|gb|EFZ30569.1| proliferator-activated receptor-interacting protein interacting
           protein, putative [Trypanosoma cruzi]
          Length = 250

 Score = 47.5 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 4/71 (5%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQ 96
            +LD   G GG +    ++   V+A+D DP A+   ++ +  Y   ++ S +   F  L+
Sbjct: 63  CVLDLFCGCGGDTVQLARVYEKVVAVDIDPDAIEAAKKNVEVYGVGDRVSFYCCDFRTLK 122

Query: 97  DYVPDKGVDGV 107
             + +   D V
Sbjct: 123 --LDNMEFDAV 131


>gi|332701445|ref|ZP_08421533.1| rRNA methylase [Desulfovibrio africanus str. Walvis Bay]
 gi|332551594|gb|EGJ48638.1| rRNA methylase [Desulfovibrio africanus str. Walvis Bay]
          Length = 206

 Score = 47.5 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 8/88 (9%)

Query: 33  NPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMRDYK--EQFSL 87
              PG + +DAT G G  +    +       V   D    A+   +E +      E+  +
Sbjct: 18  ALRPGDLAVDATLGNGRDAVLLAESVGQAGKVFCFDIQEVAIHRARERLAAAGLLERVQI 77

Query: 88  FQATFSQLQDYVP---DKGVDGVVFDLG 112
           F+A   +L +++P      V    F+LG
Sbjct: 78  FRAGHERLTEHLPPESQGHVRAATFNLG 105


>gi|221120690|ref|XP_002160870.1| PREDICTED: similar to trimethylguanosine synthase homolog [Hydra
           magnipapillata]
          Length = 265

 Score = 47.5 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 2/68 (2%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96
           +++DA  G GG +  F    ++VIA+D DP  + C ++    Y    + S     F  L 
Sbjct: 105 IVVDAFCGIGGNTIQFALKSNHVIAIDIDPVRLECARQNAAIYGVENRISFILGDFFVLA 164

Query: 97  DYVPDKGV 104
             +    V
Sbjct: 165 PSLKADVV 172


>gi|251795313|ref|YP_003010044.1| rRNA methylase [Paenibacillus sp. JDR-2]
 gi|247542939|gb|ACS99957.1| putative rRNA methylase [Paenibacillus sp. JDR-2]
          Length = 192

 Score = 47.5 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 11/91 (12%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDYKEQ-----F 85
             PG +++DAT G G  +    ++      V A D    A+    E +R  +E+      
Sbjct: 18  VQPGDIVIDATAGGGVDTLKLAELVGARGTVHAFDIQQDALDRTLERLRPLEERGKLPQV 77

Query: 86  SLFQATFSQLQDYV---PDKGVDGVVFDLGV 113
            L     + + + V    +  V  V+F+LG 
Sbjct: 78  RLHLRNHALMAEAVGPSAEGNVAAVMFNLGY 108


>gi|117919559|ref|YP_868751.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella sp. ANA-3]
 gi|143581951|sp|A0KU76|RUMA_SHESA RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|117611891|gb|ABK47345.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shewanella sp. ANA-3]
          Length = 449

 Score = 47.5 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 2/89 (2%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82
           ++ + +  L P PG+ ILD   G G +S    K+G+ VI ++  P  VS  +E       
Sbjct: 291 MVAQALEWLAPQPGERILDLFCGMGNFSLPLAKLGAEVIGVEGVPEMVSQARENAAANGL 350

Query: 83  EQFSLFQATFSQLQDYVPDKG-VDGVVFD 110
              + +    S      P  G +D ++ D
Sbjct: 351 SNLTFYHGDLSADLSCEPWMGKIDKLLLD 379


>gi|118579003|ref|YP_900253.1| putative rRNA methylase [Pelobacter propionicus DSM 2379]
 gi|118501713|gb|ABK98195.1| putative rRNA methylase [Pelobacter propionicus DSM 2379]
          Length = 196

 Score = 47.5 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 32/86 (37%), Gaps = 8/86 (9%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK--EQFSL 87
             PG + +DAT G  G+              V A D    A+S     +      E+  L
Sbjct: 27  IQPGDLAVDATCGN-GHDTLLLANLVGPSGRVWAFDVQERAISATSRRLGQAGMAERVEL 85

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGV 113
                  L + VP   V GV+F+LG 
Sbjct: 86  ILGGHESLAEQVPTP-VRGVMFNLGY 110


>gi|54298357|ref|YP_124726.1| hypothetical protein lpp2419 [Legionella pneumophila str. Paris]
 gi|53752142|emb|CAH13572.1| hypothetical protein lpp2419 [Legionella pneumophila str. Paris]
          Length = 212

 Score = 47.5 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 5/75 (6%)

Query: 38  KVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQL 95
           K+++D   G GG + +  + G  VIA++ D   ++  +   R Y      +     F   
Sbjct: 58  KIVVDGFCGIGGSAIALARTGKKVIAIEMDSVRLAMAKNNARVYGVEHLITFVHGDFF-- 115

Query: 96  QDYVPDKGVDGVVFD 110
            D   +   D V+ D
Sbjct: 116 -DVAAEIKADAVLID 129


>gi|148360197|ref|YP_001251404.1| hypothetical protein LPC_2129 [Legionella pneumophila str. Corby]
 gi|148281970|gb|ABQ56058.1| hypothetical protein LPC_2129 [Legionella pneumophila str. Corby]
          Length = 212

 Score = 47.5 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 5/75 (6%)

Query: 38  KVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQL 95
           K+++D   G GG + +  + G  VIA++ D   ++  +   R Y      +     F   
Sbjct: 58  KIVVDGFCGIGGSAIALARTGKKVIAIEMDSVRLAMAKNNARVYGVEHLITFVHGDFF-- 115

Query: 96  QDYVPDKGVDGVVFD 110
            D   +   D V+ D
Sbjct: 116 -DVAAEIKADAVLID 129


>gi|294789034|ref|ZP_06754274.1| ribosomal RNA small subunit methyltransferase B [Simonsiella
           muelleri ATCC 29453]
 gi|294483136|gb|EFG30823.1| ribosomal RNA small subunit methyltransferase B [Simonsiella
           muelleri ATCC 29453]
          Length = 421

 Score = 47.1 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 1/82 (1%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQETMRDYKEQFSLFQ 89
           LLNP  G+ +LDA    GG +    ++   +V+ALD D   ++  QE +     Q +L  
Sbjct: 239 LLNPQAGERVLDACAAPGGKTGHILELADCDVVALDIDNKRLARVQENLSRLNFQATLHC 298

Query: 90  ATFSQLQDYVPDKGVDGVVFDL 111
           A    + ++   +  D ++ D+
Sbjct: 299 APAENVHEWWDGQPFDAILADV 320


>gi|138896384|ref|YP_001126837.1| hypothetical protein GTNG_2747 [Geobacillus thermodenitrificans
           NG80-2]
 gi|134267897|gb|ABO68092.1| Conserved hypothetical protein [Geobacillus thermodenitrificans
           NG80-2]
          Length = 191

 Score = 47.1 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 45/99 (45%), Gaps = 15/99 (15%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGY-SRSFCKM---GSNVIALDRDPFAVSCGQETMR 79
           LLE+ +       G + +DAT G  G+ +    ++     +V   D  P A++     + 
Sbjct: 13  LLERAV-----TEGDLAIDATVGN-GHDTVYLAELVGDSGHVFGFDIQPEAIAATTARLS 66

Query: 80  DYK--EQFSLFQATFSQLQDYVPDK---GVDGVVFDLGV 113
           +    ++ +LFQ + S+L   +P      + G VF+LG 
Sbjct: 67  EQGLLDRVTLFQQSHSELLTALPSDVYGRIGGAVFNLGY 105


>gi|168184845|ref|ZP_02619509.1| conserved hypothetical protein [Clostridium botulinum Bf]
 gi|237793675|ref|YP_002861227.1| hypothetical protein CLJ_B0411 [Clostridium botulinum Ba4 str. 657]
 gi|182672096|gb|EDT84057.1| conserved hypothetical protein [Clostridium botulinum Bf]
 gi|229263450|gb|ACQ54483.1| conserved hypothetical protein [Clostridium botulinum Ba4 str. 657]
          Length = 188

 Score = 47.1 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 7/82 (8%)

Query: 37  GKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQAT 91
           G + +D T G  G+              VI+ D    A++  +E +R +  +  +L    
Sbjct: 24  GDIAVDCTLGK-GHDTILLANLVGNKGKVISFDIQKEAINKTKEKLRKFDYKNITLINDG 82

Query: 92  FSQLQDYVPDKGVDGVVFDLGV 113
              L  ++ +  V   +F+LG 
Sbjct: 83  HENLDRHIQE-KVKLFIFNLGY 103


>gi|229845963|ref|ZP_04466075.1| hypothetical protein CGSHi7P49H1_03913 [Haemophilus influenzae
           7P49H1]
 gi|229810967|gb|EEP46684.1| hypothetical protein CGSHi7P49H1_03913 [Haemophilus influenzae
           7P49H1]
          Length = 254

 Score = 47.1 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 11/96 (11%)

Query: 22  PVLLEKVIA------LLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCG 74
           P+ L +++       LL    GK +LD   G GG+ + + K G + VI  D     +   
Sbjct: 24  PISLNEIVEKPTMLSLLPDLKGKKLLDLGCGTGGHLQLYLKRGAAKVIGTDLSEKMLEQA 83

Query: 75  QETMR---DYKEQFSLFQATFSQLQDYVPDKGVDGV 107
           ++ ++    +  +FSL+     +L + +P+   D +
Sbjct: 84  EKDLQKCGQFSGRFSLYHLPMEKLAE-LPECHFDVI 118


>gi|145223449|ref|YP_001134127.1| methyltransferase type 11 [Mycobacterium gilvum PYR-GCK]
 gi|145215935|gb|ABP45339.1| Methyltransferase type 11 [Mycobacterium gilvum PYR-GCK]
          Length = 207

 Score = 47.1 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 46  GAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD-K 102
           G G  ++   +      V A+D DP  +    E +  Y  +  L Q + + L   +    
Sbjct: 47  GYG--TQLILERFGAATVDAVDLDPAMIRRAGERLARYGNRVRLVQGSATDLSTALDAGD 104

Query: 103 GVDGVVFDLGV 113
           G  G VFD G+
Sbjct: 105 GSYGAVFDFGI 115


>gi|148978298|ref|ZP_01814803.1| Sun protein [Vibrionales bacterium SWAT-3]
 gi|145962457|gb|EDK27735.1| Sun protein [Vibrionales bacterium SWAT-3]
          Length = 426

 Score = 47.1 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 35/89 (39%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQF 85
            +  L P  G++ILD     GG +    +  ++  V+A+D D   +    + +   + + 
Sbjct: 235 SVDYLTPKDGELILDCCAAPGGKTAHILEHTNDTEVVAIDCDIKRLDRVYDNLERLQLRA 294

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            +        +++      D ++ D   S
Sbjct: 295 DVICGDARYPEEWWMGDKFDRILLDAPCS 323


>gi|24374962|ref|NP_719005.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella oneidensis
           MR-1]
 gi|50401580|sp|Q8EBQ3|RUMA_SHEON RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|24349686|gb|AAN56449.1|AE015782_1 RNA methyltransferase, TrmA family [Shewanella oneidensis MR-1]
          Length = 449

 Score = 47.1 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 2/89 (2%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETM-RDYK 82
           ++ + +  L P PG+ ILD   G G +S    +MG++VI ++  P  VS  +E    +  
Sbjct: 291 MVAQALDWLAPQPGERILDLFCGMGNFSLPLARMGADVIGVEGVPEMVSQARENAVANGL 350

Query: 83  EQFSLFQATFS-QLQDYVPDKGVDGVVFD 110
              + +    S  L        +D ++ D
Sbjct: 351 SNLTFYHGDLSADLSSEPWMGKIDKLLLD 379


>gi|322804628|emb|CBZ02180.1| sam-dependent methyltransferase, MraW methylase family [Clostridium
           botulinum H04402 065]
          Length = 188

 Score = 47.1 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 35/82 (42%), Gaps = 7/82 (8%)

Query: 37  GKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQAT 91
           G + +D T G  G+              VI+ D    A++  +E +R++  +  +L    
Sbjct: 24  GDIAVDCTLGK-GHDTVLLANLVGNKGKVISFDIQKEAINKTREKLREFDYKNITLINDG 82

Query: 92  FSQLQDYVPDKGVDGVVFDLGV 113
             +L  ++ +  V   +F+LG 
Sbjct: 83  HEKLDKHIQE-KVKLFIFNLGY 103


>gi|110643527|ref|YP_671257.1| 16S rRNA methyltransferase B [Escherichia coli 536]
 gi|123343554|sp|Q0TCH3|RSMB_ECOL5 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|110345119|gb|ABG71356.1| SUN protein [Escherichia coli 536]
          Length = 429

 Score = 47.1 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQF 85
            +  L P  G+ ILD   G GG +    ++     V+A+D D   +S   + ++    + 
Sbjct: 238 CMTWLAPQNGEHILDLCAGPGGKTTHILEVAPEAQVLAVDIDEQRLSRVYDNLKRLGMKA 297

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
           ++ Q        +  ++  D ++ D   S
Sbjct: 298 TVKQGDGRYPSQWCGEQQFDRILLDAPCS 326


>gi|319938710|ref|ZP_08013074.1| methyltransferase [Streptococcus anginosus 1_2_62CV]
 gi|319811760|gb|EFW08026.1| methyltransferase [Streptococcus anginosus 1_2_62CV]
          Length = 182

 Score = 47.1 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 10/91 (10%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82
           LE+V+         +++DAT G  G+ +    ++   V A D    AV    + + + K 
Sbjct: 12  LEEVV-----TDEDIVVDATMGN-GHDTLFLARLAKKVYAFDIQEQAVEQTTKRLAEAKL 65

Query: 83  EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
           +   L       +  YV    +   +F+LG 
Sbjct: 66  DNVELLLTGHENVDQYVA--SIKAAIFNLGY 94


>gi|260774556|ref|ZP_05883469.1| ribosomal RNA small subunit methyltransferase B [Vibrio
           metschnikovii CIP 69.14]
 gi|260610462|gb|EEX35668.1| ribosomal RNA small subunit methyltransferase B [Vibrio
           metschnikovii CIP 69.14]
          Length = 426

 Score = 47.1 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 35/89 (39%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQETMRDYKEQF 85
            I  L P  G++ILD     GG +    +    + V+A+D D   +    + +   + + 
Sbjct: 235 AIDYLQPQDGELILDCCAAPGGKTAHILEHTQDTEVVAIDSDAARLERVYDNLERLQLRA 294

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            +        +++   +  D ++ D   S
Sbjct: 295 DVICGDARYPEEWWQGEQFDRILLDAPCS 323


>gi|153812378|ref|ZP_01965046.1| hypothetical protein RUMOBE_02777 [Ruminococcus obeum ATCC 29174]
 gi|149831540|gb|EDM86627.1| hypothetical protein RUMOBE_02777 [Ruminococcus obeum ATCC 29174]
          Length = 187

 Score = 46.7 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 5/86 (5%)

Query: 33  NPAPGKVILDATFGAGGYS---RSFCKMGSNVIALDRDPFAVSCGQETM--RDYKEQFSL 87
              PG + +DAT G G  +    S C    +V A D    A+   ++ +   D  + ++L
Sbjct: 17  QVQPGDICIDATMGNGNDTLLLSSLCGKDGHVFAFDIQEEALINTRKRLMEADAPQNYTL 76

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGV 113
              + + ++ YV    V  + F+LG 
Sbjct: 77  LLESHTNIEHYVDPGTVSCITFNLGY 102


>gi|296331975|ref|ZP_06874439.1| putative RNA methylase [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305675631|ref|YP_003867303.1| putative RNA methylase [Bacillus subtilis subsp. spizizenii str.
           W23]
 gi|296150746|gb|EFG91631.1| putative RNA methylase [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305413875|gb|ADM38994.1| putative RNA methylase [Bacillus subtilis subsp. spizizenii str.
           W23]
          Length = 194

 Score = 46.7 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 9/86 (10%)

Query: 36  PGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETM-RDYKEQFSLFQA 90
            G +++DAT G  G+   F         +V A D    AV+  +E +   Y+ + +LF  
Sbjct: 20  EGDIVIDATMGN-GHDTQFLAELVGENGHVYAFDIQESAVANTKERLGEAYQARTTLFHK 78

Query: 91  TFSQLQDYVP---DKGVDGVVFDLGV 113
           +  ++   +P      V   VF+LG 
Sbjct: 79  SHDKIAKSLPPETHGKVAAAVFNLGY 104


>gi|218232477|ref|YP_002369548.1| hypothetical protein BCB4264_A4862 [Bacillus cereus B4264]
 gi|218160434|gb|ACK60426.1| conserved hypothetical protein [Bacillus cereus B4264]
          Length = 190

 Score = 46.7 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 31/90 (34%), Gaps = 10/90 (11%)

Query: 33  NPAPGKVILDATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFS 86
               G   +DAT G  G+              V   D    A+      +++ K  E+  
Sbjct: 17  AVKEGDYAVDATLGN-GHDTCFLAEIVGDNGKVFGFDIQKEAIESSTTRLKEKKLFERTV 75

Query: 87  LFQATFSQLQDYVPDK---GVDGVVFDLGV 113
           L   +   L   +P+     V G +F+LG 
Sbjct: 76  LVHDSHDTLLSILPEDAKGKVTGAIFNLGY 105


>gi|161506038|ref|YP_001573150.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|224493259|sp|A9MN78|RSMB_SALAR RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|160867385|gb|ABX24008.1| hypothetical protein SARI_04219 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 429

 Score = 46.7 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85
            +A L P  G+ ILD     GG +    +     +V+A+D D   +S   + ++    + 
Sbjct: 238 CVAFLAPQNGEHILDLCAAPGGKTTHILEAAPEADVLAVDVDEQRLSRIYDNLKRLGMKA 297

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
           ++ Q        +  ++  D ++ D   S
Sbjct: 298 TVKQGDGRYPAQWCDEQQFDRILLDAPCS 326


>gi|221101377|ref|XP_002169665.1| PREDICTED: similar to trimethylguanosine synthase homolog, partial
           [Hydra magnipapillata]
          Length = 198

 Score = 46.7 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 2/68 (2%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96
           +++DA  G GG +  F    ++VIA+D DP  + C ++    Y    + S     F  L 
Sbjct: 38  IVIDAFCGIGGNTIQFALKSNHVIAIDIDPVRLECARQNAAIYGVENRISFILGDFFVLA 97

Query: 97  DYVPDKGV 104
             +    V
Sbjct: 98  PSLKADVV 105


>gi|242281044|ref|YP_002993173.1| rRNA methylase [Desulfovibrio salexigens DSM 2638]
 gi|242123938|gb|ACS81634.1| putative rRNA methylase [Desulfovibrio salexigens DSM 2638]
          Length = 190

 Score = 46.7 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 44/99 (44%), Gaps = 14/99 (14%)

Query: 22  PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETM 78
            VL  +V+      PG + +DAT G G  +    +      +V   D    AV+  ++ +
Sbjct: 12  SVLC-EVLH-----PGCIGVDATVGNGYDTVFLSEKAGPDGHVFGFDIQEDAVNQTEQRL 65

Query: 79  RD--YKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLG 112
            +      +++F +    + + +P +    V+ V+F+LG
Sbjct: 66  NEECLPANWTIFHSGHENMLELIPSEFHGRVNAVMFNLG 104


>gi|332304407|ref|YP_004432258.1| sun protein [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332171736|gb|AEE20990.1| sun protein [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 437

 Score = 46.7 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 3/88 (3%)

Query: 30  ALLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCGQETMRDYKEQFS 86
            LLN  P + ILD     GG +    ++   +   +A+D DP  +   +E +     Q S
Sbjct: 244 NLLNSQPNERILDCCAAPGGKTCHILELEPKIASCVAMDIDPSRLQRIEENLTRLGHQAS 303

Query: 87  LFQATFSQLQDYVPDKGVDGVVFDLGVS 114
           L     S+ + +   +  D ++ D   S
Sbjct: 304 LICGDASEPKAWWDGEQFDRILLDAPCS 331


>gi|194098054|ref|YP_002001102.1| hypothetical protein NGK_0477 [Neisseria gonorrhoeae NCCP11945]
 gi|254493236|ref|ZP_05106407.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|268594375|ref|ZP_06128542.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268596371|ref|ZP_06130538.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268598499|ref|ZP_06132666.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268600852|ref|ZP_06135019.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|268603157|ref|ZP_06137324.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268681638|ref|ZP_06148500.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
 gi|268683866|ref|ZP_06150728.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|268686108|ref|ZP_06152970.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
 gi|291044339|ref|ZP_06570048.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|193933344|gb|ACF29168.1| Conserved hypothetical protein [Neisseria gonorrhoeae NCCP11945]
 gi|226512276|gb|EEH61621.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|268547764|gb|EEZ43182.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268550159|gb|EEZ45178.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268582630|gb|EEZ47306.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268584983|gb|EEZ49659.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|268587288|gb|EEZ51964.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268621922|gb|EEZ54322.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
 gi|268624150|gb|EEZ56550.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|268626392|gb|EEZ58792.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
 gi|291011233|gb|EFE03229.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|317163791|gb|ADV07332.1| hypothetical protein NGTW08_0360 [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 117

 Score = 46.7 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 36/95 (37%), Gaps = 12/95 (12%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMR 79
           LL + +       G   LD T G  G+   F          V A D  P A++  +  ++
Sbjct: 11  LLREAL-----PEGGNALDGTAGN-GHDTLFLAQTAGNRGKVWAFDIQPQALNNTRCRLQ 64

Query: 80  DYK-EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
           +       L       L+ Y+P+  +D  VF+ G 
Sbjct: 65  EAGYSNVRLILDGHENLKQYIPEP-LDAAVFNFGW 98


>gi|324328648|gb|ADY23908.1| SAM-dependent methyltransferase [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 190

 Score = 46.7 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 10/90 (11%)

Query: 33  NPAPGKVILDATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFS 86
               G   +DAT G  G+              V   D    A+      +++ +  E+  
Sbjct: 17  AVKEGDYAVDATLGN-GHDTCFLAEIVGENGKVFGFDIQKEAIESSTTRLKEKELFERTI 75

Query: 87  LFQATFSQLQDYVPDK---GVDGVVFDLGV 113
           L   +   L   +P+     V G +F+LG 
Sbjct: 76  LVHDSHDTLLSVLPEDAKGKVTGAIFNLGY 105


>gi|228941931|ref|ZP_04104475.1| hypothetical protein bthur0008_45660 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228961019|ref|ZP_04122647.1| hypothetical protein bthur0005_44710 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228974862|ref|ZP_04135424.1| hypothetical protein bthur0003_46130 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228981455|ref|ZP_04141753.1| hypothetical protein bthur0002_46160 [Bacillus thuringiensis Bt407]
 gi|228778280|gb|EEM26549.1| hypothetical protein bthur0002_46160 [Bacillus thuringiensis Bt407]
 gi|228784866|gb|EEM32883.1| hypothetical protein bthur0003_46130 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228798652|gb|EEM45637.1| hypothetical protein bthur0005_44710 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228817764|gb|EEM63845.1| hypothetical protein bthur0008_45660 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
          Length = 177

 Score = 46.7 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 10/90 (11%)

Query: 33  NPAPGKVILDATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFS 86
               G   +DAT G  G+              V   D    A+      +++ +  E+  
Sbjct: 4   AVKEGDYAVDATLGN-GHDTCFLAEIVGDNGKVFGFDIQKEAIESSTTRLKEKELFERTV 62

Query: 87  LFQATFSQLQDYVPDK---GVDGVVFDLGV 113
           L   +   L   +P+     V G +F+LG 
Sbjct: 63  LVHDSHDTLLSVLPEDAKGKVTGAIFNLGY 92


>gi|228923508|ref|ZP_04086790.1| hypothetical protein bthur0011_44850 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228836146|gb|EEM81505.1| hypothetical protein bthur0011_44850 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 177

 Score = 46.7 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 10/90 (11%)

Query: 33  NPAPGKVILDATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFS 86
               G   +DAT G  G+              V   D    A+      +++ +  E+  
Sbjct: 4   AVKEGDYAVDATLGN-GHDTCFLAEIVGDNGKVFGFDIQKEAIESSTTRLKEKELFERTV 62

Query: 87  LFQATFSQLQDYVPD---KGVDGVVFDLGV 113
           L   +   L   +P+     V G +F+LG 
Sbjct: 63  LVHDSHDTLLSVLPEGAKGKVTGAIFNLGY 92


>gi|153854162|ref|ZP_01995470.1| hypothetical protein DORLON_01461 [Dorea longicatena DSM 13814]
 gi|149753211|gb|EDM63142.1| hypothetical protein DORLON_01461 [Dorea longicatena DSM 13814]
          Length = 190

 Score = 46.7 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 36/93 (38%), Gaps = 6/93 (6%)

Query: 26  EKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDYK 82
            ++I       G   +DAT G G  +   C++      V+A D    A+   +E ++ + 
Sbjct: 14  HEIIRSQA-EEGGYYIDATMGKGNDTLFLCELAGEKGKVLAFDIQQEALDVTKELLKTHG 72

Query: 83  E--QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
           +  Q  L       +  Y   +  D + F+ G 
Sbjct: 73  KEMQAELILDGHEHMDRYAGKESADVICFNFGY 105


>gi|159477717|ref|XP_001696955.1| rRNA methylase [Chlamydomonas reinhardtii]
 gi|158274867|gb|EDP00647.1| rRNA methylase [Chlamydomonas reinhardtii]
          Length = 293

 Score = 46.7 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 10/88 (11%)

Query: 35  APGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETM-----RDYKEQF 85
            PG   +DAT G  G+   F         +VI  D    A +  +E +      + + + 
Sbjct: 111 RPGDTAVDATMGN-GHDTLFLAQAVGPTGHVIGFDIQEAATASTRERLESHLSAEVRPRL 169

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGV 113
           SL  A  S+LQ+         V F+LG 
Sbjct: 170 SLHTACHSRLQELAGSGRARVVAFNLGY 197


>gi|224476851|ref|YP_002634457.1| hypothetical protein Sca_1368 [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222421458|emb|CAL28272.1| conserved hypothetical protein [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 185

 Score = 46.7 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 30/85 (35%), Gaps = 7/85 (8%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDYKEQFSLFQA 90
                 ++DAT G  G+   F         V   D    A+   Q  +RD      L   
Sbjct: 18  INESSTVIDATCGN-GHDTLFLAEHVPNGKVYGFDIQEEAIKAAQLKVRDL-NNTILIHD 75

Query: 91  TFSQLQDYVP--DKGVDGVVFDLGV 113
               ++ Y+   D  VD  +F+LG 
Sbjct: 76  GHENIEQYIESNDYPVDAAIFNLGY 100


>gi|118479881|ref|YP_897032.1| SAM-dependent methyltransferase [Bacillus thuringiensis str. Al
           Hakam]
 gi|196043789|ref|ZP_03111026.1| conserved hypothetical protein [Bacillus cereus 03BB108]
 gi|225866741|ref|YP_002752119.1| hypothetical protein BCA_4875 [Bacillus cereus 03BB102]
 gi|118419106|gb|ABK87525.1| SAM-dependent methyltransferase, MraW methylase family [Bacillus
           thuringiensis str. Al Hakam]
 gi|196025125|gb|EDX63795.1| conserved hypothetical protein [Bacillus cereus 03BB108]
 gi|225787347|gb|ACO27564.1| conserved hypothetical protein [Bacillus cereus 03BB102]
          Length = 190

 Score = 46.7 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 10/90 (11%)

Query: 33  NPAPGKVILDATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFS 86
               G   +DAT G  G+              V   D    A+      +++ +  E+  
Sbjct: 17  AVKEGDYAVDATLGN-GHDTCFLAEIVGNNGKVFGFDIQKEAIESSTTRLKEKELFERTV 75

Query: 87  LFQATFSQLQDYVPDK---GVDGVVFDLGV 113
           L   +   L   +P+     V G +F+LG 
Sbjct: 76  LVHDSHDTLLSVLPEDAKGKVTGAIFNLGY 105


>gi|116492413|ref|YP_804148.1| SAM-dependent methyltransferase [Pediococcus pentosaceus ATCC
           25745]
 gi|116102563|gb|ABJ67706.1| SAM-dependent methyltransferase [Pediococcus pentosaceus ATCC
           25745]
          Length = 187

 Score = 46.7 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 14/97 (14%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMR 79
           LL +++      PG V++DAT G  G+   F          V + D    A+   +    
Sbjct: 12  LLTEIV-----QPGDVVIDATMGN-GHDTLFLSELVQSTGRVFSFDVQKAALEQTRALFE 65

Query: 80  DYKE---QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
              +      L  A+  Q+  YV +  + G +F+LG 
Sbjct: 66  HQHQTLINVELIHASHDQIDHYVTEP-ITGAIFNLGY 101


>gi|228988006|ref|ZP_04148110.1| hypothetical protein bthur0001_46710 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228771723|gb|EEM20185.1| hypothetical protein bthur0001_46710 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 177

 Score = 46.7 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 10/90 (11%)

Query: 33  NPAPGKVILDATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFS 86
               G   +DAT G  G+              V   D    A+      +++ +  E+  
Sbjct: 4   AVKEGDYAVDATLGN-GHDTCFLAEIVGDNGKVFGFDIQKEAIESSTTRLKEKELFERTV 62

Query: 87  LFQATFSQLQDYVPDK---GVDGVVFDLGV 113
           L   +   L   +P+     V G +F+LG 
Sbjct: 63  LVHDSHDTLLSVLPEDAKGKVTGAIFNLGY 92


>gi|229141487|ref|ZP_04270023.1| hypothetical protein bcere0013_45810 [Bacillus cereus BDRD-ST26]
 gi|229199766|ref|ZP_04326385.1| hypothetical protein bcere0001_52280 [Bacillus cereus m1293]
 gi|228583706|gb|EEK41905.1| hypothetical protein bcere0001_52280 [Bacillus cereus m1293]
 gi|228641972|gb|EEK98267.1| hypothetical protein bcere0013_45810 [Bacillus cereus BDRD-ST26]
          Length = 177

 Score = 46.7 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 10/90 (11%)

Query: 33  NPAPGKVILDATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFS 86
               G   +DAT G  G+              V   D    A+      +++ +  E+  
Sbjct: 4   AVKEGDYAVDATLGN-GHDTCFLAEIVGDNGKVFGFDIQKEAIESSTTRLKEKELFERTV 62

Query: 87  LFQATFSQLQDYVPDK---GVDGVVFDLGV 113
           L   +   L   +P+     V G +F+LG 
Sbjct: 63  LVHDSHDTLLSVLPEDAKGKVTGAIFNLGY 92


>gi|52140754|ref|YP_086075.1| SAM-dependent methyltransferase [Bacillus cereus E33L]
 gi|51974223|gb|AAU15773.1| SAM-dependent methyltransferase, MraW methylase family [Bacillus
           cereus E33L]
          Length = 190

 Score = 46.7 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 10/90 (11%)

Query: 33  NPAPGKVILDATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFS 86
               G   +DAT G  G+              V   D    A+      +++ +  E+  
Sbjct: 17  AVKEGDYAVDATLGN-GHDTCFLAEIIGDNGKVFGFDIQKEAIESSTTRLKEKELFERTV 75

Query: 87  LFQATFSQLQDYVPDK---GVDGVVFDLGV 113
           L   +   L   +P+     V G +F+LG 
Sbjct: 76  LVHDSHDTLLSVLPEDAKGKVTGAIFNLGY 105


>gi|148236727|ref|NP_001085693.1| trimethylguanosine synthase 1 [Xenopus laevis]
 gi|49119211|gb|AAH73206.1| MGC80481 protein [Xenopus laevis]
          Length = 837

 Score = 46.3 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 2/69 (2%)

Query: 38  KVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQL 95
            +++DA  G GG +  F K G+ VIA+D DP  +   +     Y   +Q       F  L
Sbjct: 681 GLVVDAFCGVGGNAIQFAKAGNRVIAVDIDPAKLDFARNNAEVYGVTDQIEFILGDFMVL 740

Query: 96  QDYVPDKGV 104
              +    +
Sbjct: 741 APALKADAI 749


>gi|55823549|ref|YP_141990.1| rRNA methylase [Streptococcus thermophilus CNRZ1066]
 gi|55739534|gb|AAV63175.1| rRNA methylase (SAM-dependent methyltransferase superfamily),
           putative [Streptococcus thermophilus CNRZ1066]
          Length = 182

 Score = 46.3 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 7/90 (7%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-E 83
           L +V+         +++DAT G G  +     +   V A D    A+    + + D   E
Sbjct: 13  LAEVLD-----DESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQAIGKTSQRLSDLGIE 67

Query: 84  QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
              L       L  YV +  +   +F+LG 
Sbjct: 68  NTELILDGHENLDHYVREP-IRAAIFNLGY 96


>gi|302756219|ref|XP_002961533.1| hypothetical protein SELMODRAFT_76241 [Selaginella moellendorffii]
 gi|300170192|gb|EFJ36793.1| hypothetical protein SELMODRAFT_76241 [Selaginella moellendorffii]
          Length = 205

 Score = 46.3 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 37/101 (36%), Gaps = 14/101 (13%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96
           V++DA  G GG +  F     +VIA+D+DP  ++  +     Y    +       F QL 
Sbjct: 45  VVIDAFAGVGGNTIQFALRSEHVIAIDKDPMKIAYARHNAEIYGVSHRIDFVVGDFFQLA 104

Query: 97  DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
             +          D+   S      +    + K    D+ M
Sbjct: 105 PSLK--------ADVIFLSPPWGGPE----YLKDTSYDISM 133


>gi|302775726|ref|XP_002971280.1| hypothetical protein SELMODRAFT_95290 [Selaginella moellendorffii]
 gi|300161262|gb|EFJ27878.1| hypothetical protein SELMODRAFT_95290 [Selaginella moellendorffii]
          Length = 205

 Score = 46.3 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 37/101 (36%), Gaps = 14/101 (13%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96
           V++DA  G GG +  F     +VIA+D+DP  ++  +     Y    +       F QL 
Sbjct: 47  VVIDAFAGVGGNTIQFALRSEHVIAIDKDPMKIAYARHNAEIYGVSHRIDFVVGDFFQLA 106

Query: 97  DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
             +          D+   S      +    + K    D+ M
Sbjct: 107 PSLK--------ADVIFLSPPWGGPE----YLKDTSYDISM 135


>gi|37528514|ref|NP_931859.1| 16S rRNA methyltransferase B [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|46396778|sp|Q7MYI0|RSMB_PHOLL RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|36787952|emb|CAE17069.1| RsmB protein (SUN/FMU protein), 16S RNA m5C967 methyltransferase
           [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 429

 Score = 46.3 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 38/91 (41%), Gaps = 2/91 (2%)

Query: 26  EKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKE 83
           ++ + LL P  G+ ILD     GG +    ++     V+A+D D   +   +E ++    
Sbjct: 236 QECVELLKPINGEKILDLCAAPGGKTTYILEIAPESQVVAVDIDEQRIKRVKENLKRLNC 295

Query: 84  QFSLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
             ++        + +  ++  D ++ D   S
Sbjct: 296 HATVKTGDGRHPEHWAENQQFDRILLDAPCS 326


>gi|323496958|ref|ZP_08101986.1| 16S rRNA methyltransferase B [Vibrio sinaloensis DSM 21326]
 gi|323318032|gb|EGA71015.1| 16S rRNA methyltransferase B [Vibrio sinaloensis DSM 21326]
          Length = 426

 Score = 46.3 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 35/89 (39%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQF 85
            +  L P  G++ILD     GG +    +   +  V+A+D D   +    + +   + + 
Sbjct: 235 SVNYLQPQDGELILDCCAAPGGKTAHILEHTEDTEVVAIDCDVKRLDRVYDNLERLQLRA 294

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            +        Q++   +  D ++ D   S
Sbjct: 295 DVICGDARYPQEWWSGEKFDRILLDAPCS 323


>gi|170724406|ref|YP_001758432.1| sun protein [Shewanella woodyi ATCC 51908]
 gi|169809753|gb|ACA84337.1| sun protein [Shewanella woodyi ATCC 51908]
          Length = 425

 Score = 46.3 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 1/85 (1%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQETMRDYKEQFSLFQ 89
           LL PA G++ILDA    GG +    +   + ++A+D D   +   Q+ +        L  
Sbjct: 235 LLAPADGELILDACAAPGGKTCHILERADTELVAVDFDANRLERVQQNLDRLSLNAKLVH 294

Query: 90  ATFSQLQDYVPDKGVDGVVFDLGVS 114
              + +  +      D ++ D   S
Sbjct: 295 GDAADIDSWWQGDKFDRILLDAPCS 319


>gi|55379714|ref|YP_137564.1| ubiquinone/menaquinone biosynthesis methyltransferase [Haloarcula
           marismortui ATCC 43049]
 gi|55232439|gb|AAV47858.1| ubiquinone/menaquinone biosynthesis methyltransferase [Haloarcula
           marismortui ATCC 43049]
          Length = 206

 Score = 46.3 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 3/84 (3%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83
           + ++ IA+L+ +P   +LD   G G  +    +    V  LD+ P  +S   E    + +
Sbjct: 33  MRDEAIAMLDLSPDDKVLDVGCGTGFATEGLLEHVDTVYGLDQSPHQLSKAFEKFGKFGD 92

Query: 84  QFSLFQATFSQLQDYVPDKGVDGV 107
                     +L     D   D V
Sbjct: 93  -VRYHLGDAERLP--FKDDSFDAV 113


>gi|326942536|gb|AEA18432.1| SAM-dependent methyltransferase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 190

 Score = 46.3 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 10/90 (11%)

Query: 33  NPAPGKVILDATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFS 86
               G   +DAT G  G+              V   D    A+      +++ +  E+  
Sbjct: 17  AVKEGDYAVDATLGN-GHDTCFLAEIVGDNGKVFGFDIQKEAIESSTTRLKEKELFERTV 75

Query: 87  LFQATFSQLQDYVPDK---GVDGVVFDLGV 113
           L   +   L   +P+     V G +F+LG 
Sbjct: 76  LVHDSHDTLLSVLPEDAKGKVTGAIFNLGY 105


>gi|163751682|ref|ZP_02158901.1| sun protein [Shewanella benthica KT99]
 gi|161328421|gb|EDP99577.1| sun protein [Shewanella benthica KT99]
          Length = 425

 Score = 46.3 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 36/85 (42%), Gaps = 1/85 (1%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSLFQ 89
           LL P  G++ILDA    GG +    ++ +  ++A+D D   +   Q+ +     +  L  
Sbjct: 235 LLAPKDGELILDACAAPGGKTCHLLELANIELVAVDFDEKRLERVQQNLDRLSLKAKLVH 294

Query: 90  ATFSQLQDYVPDKGVDGVVFDLGVS 114
              + +  +      D ++ D   S
Sbjct: 295 GDAADIDSWWQGDKFDRILLDAPCS 319


>gi|261379857|ref|ZP_05984430.1| putative rRNA methylase [Neisseria subflava NJ9703]
 gi|284797554|gb|EFC52901.1| putative rRNA methylase [Neisseria subflava NJ9703]
          Length = 189

 Score = 46.3 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 55/184 (29%), Gaps = 32/184 (17%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMR 79
           LL++ +       G   LDAT G  G+              V A D    A++  Q  ++
Sbjct: 13  LLQQAL-----KAGGRALDATAGN-GHDTLLLAQSVGETGRVWAFDVQLKALAQTQGRLK 66

Query: 80  D--YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV-------SSMQIDCGDR----GFS 126
           +     + +L       L  Y+ +  +D  VF+ G         + +     R       
Sbjct: 67  ENGVDGRVALIHDGHENLLSYIDEP-LDAAVFNFGWLPGGDKSCTTEAASSIRALTDTLG 125

Query: 127 FQKSGPLDMRMSCSGISAS--------DVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178
             K G L + +   G  A                 +    +       + A     AI K
Sbjct: 126 LLKEGGLAVAVLYPGHEAGRIEAEAIVQWTETLPQEAFAVLRYGFVNRRNAPPYLLAIEK 185

Query: 179 RRQS 182
            RQ 
Sbjct: 186 LRQK 189


>gi|301056259|ref|YP_003794470.1| MraW methylase family protein [Bacillus anthracis CI]
 gi|300378428|gb|ADK07332.1| SAM-dependent methyltransferase, MraW methylase family [Bacillus
           cereus biovar anthracis str. CI]
          Length = 190

 Score = 46.3 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 10/90 (11%)

Query: 33  NPAPGKVILDATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFS 86
               G   +DAT G  G+              V   D    A+      +++ +  E+  
Sbjct: 17  AVKEGDYAVDATLGN-GHDTCFLAEIVGDNGKVFGFDIQKEAIESSTTRLKEKELFERTV 75

Query: 87  LFQATFSQLQDYVPDK---GVDGVVFDLGV 113
           L   +   L   +P+     V G +F+LG 
Sbjct: 76  LVHDSHDTLLSVLPEDAKGKVTGAIFNLGY 105


>gi|299538430|ref|ZP_07051713.1| hypothetical protein BFZC1_20568 [Lysinibacillus fusiformis ZC1]
 gi|298726017|gb|EFI66609.1| hypothetical protein BFZC1_20568 [Lysinibacillus fusiformis ZC1]
          Length = 246

 Score = 46.3 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 3/90 (3%)

Query: 20  HVPVLLEKVI-ALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETM 78
           H  VLL   I +LL    G+ +LDA  G G  SR   K G+ V A+D     +    E  
Sbjct: 28  HRVVLLNPSIFSLLGEVDGRHLLDAGCGEGYLSRLLVKKGARVTAVDFSQKMLDIAMERT 87

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVDGVV 108
           +  +E           +  ++ D+  DG+V
Sbjct: 88  QQ-QEAIQFLHGNCENI-SFLADEQFDGIV 115


>gi|295113991|emb|CBL32628.1| Predicted S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [Enterococcus sp. 7L76]
          Length = 187

 Score = 46.3 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 13/97 (13%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMR 79
           LL++V+      PG  ++DAT G  G+  +F          V A D    A+   ++ + 
Sbjct: 12  LLKEVVE-----PGDFVIDATMGN-GHDTAFLAELVGSSGEVFAFDIQKEALINTEQKLT 65

Query: 80  DYK--EQFSLFQATFSQLQDYV-PDKGVDGVVFDLGV 113
           +     Q +LF      L   +  +  +   +F+LG 
Sbjct: 66  ELNLLPQTTLFPLGHEHLHAVLDEETEITAAIFNLGY 102


>gi|257415363|ref|ZP_05592357.1| SAM-dependent methyltransferase [Enterococcus faecalis AR01/DG]
 gi|257157191|gb|EEU87151.1| SAM-dependent methyltransferase [Enterococcus faecalis ARO1/DG]
 gi|315170873|gb|EFU14890.1| rRNA methylase family protein [Enterococcus faecalis TX1342]
          Length = 187

 Score = 46.3 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 13/97 (13%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMR 79
           LL++V+      PG  ++DAT G  G+  +F          V A D    A+   ++ + 
Sbjct: 12  LLKEVVE-----PGDFVIDATMGN-GHDTAFLAELVGPSGEVFAFDIQKEALINTEQKLT 65

Query: 80  DYK--EQFSLFQATFSQLQDYV-PDKGVDGVVFDLGV 113
           +     Q +LF      L   +  +  +   +F+LG 
Sbjct: 66  ELNLLPQTTLFPLGHEHLHAVLDEETEITAAIFNLGY 102


>gi|229546650|ref|ZP_04435375.1| rRNA methylase [Enterococcus faecalis TX1322]
 gi|256854344|ref|ZP_05559708.1| SAM-dependent methyltransferase [Enterococcus faecalis T8]
 gi|307276225|ref|ZP_07557354.1| rRNA methylase family protein [Enterococcus faecalis TX2134]
 gi|307296183|ref|ZP_07576012.1| rRNA methylase family protein [Enterococcus faecalis TX0411]
 gi|229308217|gb|EEN74204.1| rRNA methylase [Enterococcus faecalis TX1322]
 gi|256709904|gb|EEU24948.1| SAM-dependent methyltransferase [Enterococcus faecalis T8]
 gi|306496114|gb|EFM65695.1| rRNA methylase family protein [Enterococcus faecalis TX0411]
 gi|306507081|gb|EFM76222.1| rRNA methylase family protein [Enterococcus faecalis TX2134]
 gi|315029896|gb|EFT41828.1| rRNA methylase family protein [Enterococcus faecalis TX4000]
 gi|315159950|gb|EFU03967.1| rRNA methylase family protein [Enterococcus faecalis TX0312]
 gi|323479986|gb|ADX79425.1| rRNA methylase family protein [Enterococcus faecalis 62]
          Length = 187

 Score = 46.3 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 13/97 (13%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMR 79
           LL++V+      PG  ++DAT G  G+  +F          V A D    A+   ++ + 
Sbjct: 12  LLKEVVE-----PGDFVIDATMGN-GHDTAFLAELVGPSGEVFAFDIQKEALINTEQKLT 65

Query: 80  DYK--EQFSLFQATFSQLQDYV-PDKGVDGVVFDLGV 113
           +     Q +LF      L   +  +  +   +F+LG 
Sbjct: 66  ELNLLPQTTLFPLGHEHLHAVLDEETEITAAIFNLGY 102


>gi|229548736|ref|ZP_04437461.1| rRNA methylase [Enterococcus faecalis ATCC 29200]
 gi|255971252|ref|ZP_05421838.1| SAM-dependent methyltransferase [Enterococcus faecalis T1]
 gi|255973871|ref|ZP_05424457.1| SAM-dependent methyltransferase [Enterococcus faecalis T2]
 gi|256617679|ref|ZP_05474525.1| SAM-dependent methyltransferase [Enterococcus faecalis ATCC 4200]
 gi|256761557|ref|ZP_05502137.1| SAM-dependent methyltransferase [Enterococcus faecalis T3]
 gi|256957340|ref|ZP_05561511.1| SAM-dependent methyltransferase [Enterococcus faecalis DS5]
 gi|256964373|ref|ZP_05568544.1| SAM-dependent methyltransferase [Enterococcus faecalis HIP11704]
 gi|257077664|ref|ZP_05572025.1| SAM-dependent methyltransferase [Enterococcus faecalis JH1]
 gi|257081052|ref|ZP_05575413.1| SAM-dependent methyltransferase [Enterococcus faecalis E1Sol]
 gi|257083713|ref|ZP_05578074.1| SAM-dependent methyltransferase [Enterococcus faecalis Fly1]
 gi|257086149|ref|ZP_05580510.1| SAM-dependent methyltransferase [Enterococcus faecalis D6]
 gi|257089221|ref|ZP_05583582.1| SAM-dependent methyltransferase [Enterococcus faecalis CH188]
 gi|257421046|ref|ZP_05598036.1| SAM-dependent methyltransferase [Enterococcus faecalis X98]
 gi|294779821|ref|ZP_06745207.1| conserved hypothetical protein [Enterococcus faecalis PC1.1]
 gi|307270146|ref|ZP_07551463.1| rRNA methylase family protein [Enterococcus faecalis TX4248]
 gi|307271402|ref|ZP_07552677.1| rRNA methylase family protein [Enterococcus faecalis TX0855]
 gi|307284441|ref|ZP_07564604.1| rRNA methylase family protein [Enterococcus faecalis TX0860]
 gi|307289509|ref|ZP_07569455.1| rRNA methylase family protein [Enterococcus faecalis TX0109]
 gi|312901667|ref|ZP_07760937.1| rRNA methylase family protein [Enterococcus faecalis TX0470]
 gi|312904994|ref|ZP_07764129.1| rRNA methylase family protein [Enterococcus faecalis TX0635]
 gi|312951836|ref|ZP_07770726.1| rRNA methylase family protein [Enterococcus faecalis TX0102]
 gi|229306129|gb|EEN72125.1| rRNA methylase [Enterococcus faecalis ATCC 29200]
 gi|255962270|gb|EET94746.1| SAM-dependent methyltransferase [Enterococcus faecalis T1]
 gi|255966743|gb|EET97365.1| SAM-dependent methyltransferase [Enterococcus faecalis T2]
 gi|256597206|gb|EEU16382.1| SAM-dependent methyltransferase [Enterococcus faecalis ATCC 4200]
 gi|256682808|gb|EEU22503.1| SAM-dependent methyltransferase [Enterococcus faecalis T3]
 gi|256947836|gb|EEU64468.1| SAM-dependent methyltransferase [Enterococcus faecalis DS5]
 gi|256954869|gb|EEU71501.1| SAM-dependent methyltransferase [Enterococcus faecalis HIP11704]
 gi|256985694|gb|EEU72996.1| SAM-dependent methyltransferase [Enterococcus faecalis JH1]
 gi|256989082|gb|EEU76384.1| SAM-dependent methyltransferase [Enterococcus faecalis E1Sol]
 gi|256991743|gb|EEU79045.1| SAM-dependent methyltransferase [Enterococcus faecalis Fly1]
 gi|256994179|gb|EEU81481.1| SAM-dependent methyltransferase [Enterococcus faecalis D6]
 gi|256998033|gb|EEU84553.1| SAM-dependent methyltransferase [Enterococcus faecalis CH188]
 gi|257162870|gb|EEU92830.1| SAM-dependent methyltransferase [Enterococcus faecalis X98]
 gi|294453095|gb|EFG21511.1| conserved hypothetical protein [Enterococcus faecalis PC1.1]
 gi|306499527|gb|EFM68898.1| rRNA methylase family protein [Enterococcus faecalis TX0109]
 gi|306503249|gb|EFM72502.1| rRNA methylase family protein [Enterococcus faecalis TX0860]
 gi|306511934|gb|EFM80929.1| rRNA methylase family protein [Enterococcus faecalis TX0855]
 gi|306513515|gb|EFM82130.1| rRNA methylase family protein [Enterococcus faecalis TX4248]
 gi|310630187|gb|EFQ13470.1| rRNA methylase family protein [Enterococcus faecalis TX0102]
 gi|310631690|gb|EFQ14973.1| rRNA methylase family protein [Enterococcus faecalis TX0635]
 gi|311291278|gb|EFQ69834.1| rRNA methylase family protein [Enterococcus faecalis TX0470]
 gi|315027553|gb|EFT39485.1| rRNA methylase family protein [Enterococcus faecalis TX2137]
 gi|315031264|gb|EFT43196.1| rRNA methylase family protein [Enterococcus faecalis TX0017]
 gi|315035316|gb|EFT47248.1| rRNA methylase family protein [Enterococcus faecalis TX0027]
 gi|315153165|gb|EFT97181.1| rRNA methylase family protein [Enterococcus faecalis TX0031]
 gi|315154866|gb|EFT98882.1| rRNA methylase family protein [Enterococcus faecalis TX0043]
 gi|315164614|gb|EFU08631.1| rRNA methylase family protein [Enterococcus faecalis TX1302]
 gi|315578129|gb|EFU90320.1| rRNA methylase family protein [Enterococcus faecalis TX0630]
 gi|327534381|gb|AEA93215.1| rRNA methylase [Enterococcus faecalis OG1RF]
 gi|329577652|gb|EGG59082.1| putative rRNA methylase [Enterococcus faecalis TX1467]
          Length = 187

 Score = 46.3 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 13/97 (13%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMR 79
           LL++V+      PG  ++DAT G  G+  +F          V A D    A+   ++ + 
Sbjct: 12  LLKEVVE-----PGDFVIDATMGN-GHDTAFLAELVGPSGEVFAFDIQKEALINTEQKLT 65

Query: 80  DYK--EQFSLFQATFSQLQDYV-PDKGVDGVVFDLGV 113
           +     Q +LF      L   +  +  +   +F+LG 
Sbjct: 66  ELNLLPQTTLFPLGHEHLHAVLDEETEITAAIFNLGY 102


>gi|254507306|ref|ZP_05119442.1| ribosomal RNA small subunit methyltransferase B [Vibrio
           parahaemolyticus 16]
 gi|219549766|gb|EED26755.1| ribosomal RNA small subunit methyltransferase B [Vibrio
           parahaemolyticus 16]
          Length = 426

 Score = 46.3 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 35/89 (39%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQF 85
            +  L P  G++ILD     GG +    +   +  V+A+D D   +    + +   + + 
Sbjct: 235 SVNYLQPQNGELILDCCAAPGGKTAHILEHTEDTEVVAIDCDAKRLDRVYDNLERLQLRA 294

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            +        Q++   +  D ++ D   S
Sbjct: 295 DVICGDARYPQEWWSGEKFDRILLDAPCS 323


>gi|29375384|ref|NP_814538.1| hypothetical protein EF0794 [Enterococcus faecalis V583]
 gi|227517764|ref|ZP_03947813.1| rRNA methylase [Enterococcus faecalis TX0104]
 gi|227554910|ref|ZP_03984957.1| rRNA methylase [Enterococcus faecalis HH22]
 gi|256959922|ref|ZP_05564093.1| SAM-dependent methyltransferase [Enterococcus faecalis Merz96]
 gi|293385211|ref|ZP_06631028.1| putative rRNA methylase [Enterococcus faecalis R712]
 gi|293388325|ref|ZP_06632838.1| putative rRNA methylase [Enterococcus faecalis S613]
 gi|300859754|ref|ZP_07105842.1| putative rRNA methylase [Enterococcus faecalis TUSoD Ef11]
 gi|312907134|ref|ZP_07766126.1| rRNA methylase family protein [Enterococcus faecalis DAPTO 512]
 gi|312979287|ref|ZP_07790986.1| rRNA methylase family protein [Enterococcus faecalis DAPTO 516]
 gi|29342844|gb|AAO80608.1| conserved hypothetical protein [Enterococcus faecalis V583]
 gi|227074787|gb|EEI12750.1| rRNA methylase [Enterococcus faecalis TX0104]
 gi|227175966|gb|EEI56938.1| rRNA methylase [Enterococcus faecalis HH22]
 gi|256950418|gb|EEU67050.1| SAM-dependent methyltransferase [Enterococcus faecalis Merz96]
 gi|291077508|gb|EFE14872.1| putative rRNA methylase [Enterococcus faecalis R712]
 gi|291082293|gb|EFE19256.1| putative rRNA methylase [Enterococcus faecalis S613]
 gi|300850572|gb|EFK78321.1| putative rRNA methylase [Enterococcus faecalis TUSoD Ef11]
 gi|310626845|gb|EFQ10128.1| rRNA methylase family protein [Enterococcus faecalis DAPTO 512]
 gi|311287945|gb|EFQ66501.1| rRNA methylase family protein [Enterococcus faecalis DAPTO 516]
 gi|315145295|gb|EFT89311.1| rRNA methylase family protein [Enterococcus faecalis TX2141]
 gi|315151636|gb|EFT95652.1| rRNA methylase family protein [Enterococcus faecalis TX0012]
 gi|315161913|gb|EFU05930.1| rRNA methylase family protein [Enterococcus faecalis TX0645]
 gi|315174703|gb|EFU18720.1| rRNA methylase family protein [Enterococcus faecalis TX1346]
 gi|315573416|gb|EFU85607.1| rRNA methylase family protein [Enterococcus faecalis TX0309B]
 gi|315581334|gb|EFU93525.1| rRNA methylase family protein [Enterococcus faecalis TX0309A]
          Length = 187

 Score = 46.3 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 13/97 (13%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMR 79
           LL++V+      PG  ++DAT G  G+  +F          V A D    A+   ++ + 
Sbjct: 12  LLKEVVE-----PGDFVIDATMGN-GHDTAFLAELVGPSGEVFAFDIQKEALINTEQKLT 65

Query: 80  DYK--EQFSLFQATFSQLQDYV-PDKGVDGVVFDLGV 113
           +     Q +LF      L   +  +  +   +F+LG 
Sbjct: 66  ELNLLPQTTLFPLGHEHLHAVLDEETEITAAIFNLGY 102


>gi|196032979|ref|ZP_03100392.1| conserved hypothetical protein [Bacillus cereus W]
 gi|195994408|gb|EDX58363.1| conserved hypothetical protein [Bacillus cereus W]
          Length = 190

 Score = 46.3 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 10/90 (11%)

Query: 33  NPAPGKVILDATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFS 86
               G   +DAT G  G+              V   D    A+      +++ +  E+  
Sbjct: 17  AVKEGDYAVDATLGN-GHDTCFLAEIVGDNGKVFGFDIQKEAIESSTTRLKEKELFERTV 75

Query: 87  LFQATFSQLQDYVPDK---GVDGVVFDLGV 113
           L   +   L   +P+     V G +F+LG 
Sbjct: 76  LVHDSHDTLLSVLPEDAKGKVTGAIFNLGY 105


>gi|206977282|ref|ZP_03238179.1| conserved hypothetical protein [Bacillus cereus H3081.97]
 gi|217962239|ref|YP_002340809.1| hypothetical protein BCAH187_A4886 [Bacillus cereus AH187]
 gi|222098222|ref|YP_002532279.1| sam-dependent methyltransferase, mraw methylase family [Bacillus
           cereus Q1]
 gi|206744433|gb|EDZ55843.1| conserved hypothetical protein [Bacillus cereus H3081.97]
 gi|217065440|gb|ACJ79690.1| conserved hypothetical protein [Bacillus cereus AH187]
 gi|221242280|gb|ACM14990.1| SAM-dependent methyltransferase, MraW methylase family [Bacillus
           cereus Q1]
          Length = 190

 Score = 46.3 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 10/90 (11%)

Query: 33  NPAPGKVILDATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFS 86
               G   +DAT G  G+              V   D    A+      +++ +  E+  
Sbjct: 17  AVKEGDYAVDATLGN-GHDTCFLAEIVGDNGKVFGFDIQKEAIESSTTRLKEKELFERTV 75

Query: 87  LFQATFSQLQDYVPDK---GVDGVVFDLGV 113
           L   +   L   +P+     V G +F+LG 
Sbjct: 76  LVHDSHDTLLSVLPEDAKGKVTGAIFNLGY 105


>gi|49476826|ref|YP_038794.1| SAM-dependent methyltransferase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|296505217|ref|YP_003666917.1| SAM-dependent methyltransferase [Bacillus thuringiensis BMB171]
 gi|49328382|gb|AAT59028.1| SAM-dependent methyltransferase, MraW methylase family [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|296326269|gb|ADH09197.1| SAM-dependent methyltransferase [Bacillus thuringiensis BMB171]
          Length = 190

 Score = 46.3 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 10/90 (11%)

Query: 33  NPAPGKVILDATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFS 86
               G   +DAT G  G+              V   D    A+      +++ +  E+  
Sbjct: 17  AVKEGDYAVDATLGN-GHDTCFLAEIVGDNGKVFGFDIQKEAIESSTTRLKEKELFERTV 75

Query: 87  LFQATFSQLQDYVPDK---GVDGVVFDLGV 113
           L   +   L   +P+     V G +F+LG 
Sbjct: 76  LVHDSHDTLLSVLPEDAKGKVTGAIFNLGY 105


>gi|47565176|ref|ZP_00236219.1| SAM-dependent methyltransferase [Bacillus cereus G9241]
 gi|47557962|gb|EAL16287.1| SAM-dependent methyltransferase [Bacillus cereus G9241]
          Length = 190

 Score = 46.3 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 10/90 (11%)

Query: 33  NPAPGKVILDATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFS 86
               G   +DAT G  G+              V   D    A+      +++ +  E+  
Sbjct: 17  AVKEGDYAVDATLGN-GHDTCFLAEIVGDNGKVFGFDIQKEAIESSTTRLKEKELFERTV 75

Query: 87  LFQATFSQLQDYVPDK---GVDGVVFDLGV 113
           L   +   L   +P+     V G +F+LG 
Sbjct: 76  LVHDSHDTLLSVLPEDAKGKVTGAIFNLGY 105


>gi|308174723|ref|YP_003921428.1| RNA methylase [Bacillus amyloliquefaciens DSM 7]
 gi|307607587|emb|CBI43958.1| putative RNA methylase [Bacillus amyloliquefaciens DSM 7]
 gi|328554653|gb|AEB25145.1| RNA methylase [Bacillus amyloliquefaciens TA208]
 gi|328913062|gb|AEB64658.1| putative RNA methylase [Bacillus amyloliquefaciens LL3]
          Length = 193

 Score = 46.3 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 9/87 (10%)

Query: 35  APGKVILDATFGAGGYSRSFCK----MGSNVIALDRDPFAVSCGQETMRDY-KEQFSLFQ 89
             G + +DAT G  G+   F         +V A D    A++  +E + D    + +L  
Sbjct: 19  QEGDITVDATMGN-GHDTYFLAGLVGETGHVHAFDIQADALAKTKERLGDALSPRVTLHH 77

Query: 90  ATFSQLQDYVPDKG---VDGVVFDLGV 113
            +  Q++  +P+     V   VF+LG 
Sbjct: 78  KSHDQIKASLPEDAHGRVACAVFNLGY 104


>gi|56421381|ref|YP_148699.1| hypothetical protein GK2846 [Geobacillus kaustophilus HTA426]
 gi|56381223|dbj|BAD77131.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
          Length = 195

 Score = 45.9 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 43/99 (43%), Gaps = 15/99 (15%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGY-SRSFCKM---GSNVIALDRDPFAVSCGQETMR 79
           LL++ +       G + +DAT G  G+ +    +      +V   D    A++     + 
Sbjct: 13  LLDQAVN-----EGDIAVDATVGN-GHDTVYLAQRVGDFGHVFGFDIQSEAITAASARLA 66

Query: 80  DYK--EQFSLFQATFSQLQDYVPDK---GVDGVVFDLGV 113
            +    + +LF+ + S+L + +P      + G VF+LG 
Sbjct: 67  KHGLCGRATLFERSHSELLEALPADVHGRIAGAVFNLGY 105


>gi|162447114|ref|YP_001620246.1| methyltransferase [Acholeplasma laidlawii PG-8A]
 gi|161985221|gb|ABX80870.1| methyltransferase [Acholeplasma laidlawii PG-8A]
          Length = 174

 Score = 45.9 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 5/81 (6%)

Query: 34  PAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATF 92
             P   I+DAT G  G+ +        +V A D    A+   +   +D  +  +    + 
Sbjct: 18  IKPHMTIVDATCGN-GHDTLFLASRVEHVHAFDIQQEALDNTRSLTKDL-DNITYHHTSH 75

Query: 93  SQLQDYVPDKGVDGVVFDLGV 113
             +   + +   DGV+F+LG 
Sbjct: 76  EHITKLISNY--DGVIFNLGY 94


>gi|270291587|ref|ZP_06197807.1| SAM-dependent methyltransferase [Pediococcus acidilactici 7_4]
 gi|270279906|gb|EFA25744.1| SAM-dependent methyltransferase [Pediococcus acidilactici 7_4]
          Length = 187

 Score = 45.9 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 14/97 (14%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFC----KMGSNVIALDRDPFAVSCGQETMR 79
           LL +V+      PG  ++DAT G  G+   F     +    V + D    A+S  +  + 
Sbjct: 12  LLAEVV-----QPGDHVVDATMGN-GHDTLFLANLVQSQGRVFSFDIQTAALSATEARLE 65

Query: 80  DYKE---QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
                     L Q +  QL  YV D  + G VF+LG 
Sbjct: 66  KQLPDHQHVQLIQDSHDQLTQYV-DTPISGAVFNLGY 101


>gi|37681411|ref|NP_936020.1| sun protein [Vibrio vulnificus YJ016]
 gi|320154882|ref|YP_004187261.1| ribosomal RNA small subunit methyltransferase B [Vibrio vulnificus
           MO6-24/O]
 gi|46396771|sp|Q7MGK4|RSMB_VIBVY RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|37200163|dbj|BAC95991.1| sun protein [Vibrio vulnificus YJ016]
 gi|319930194|gb|ADV85058.1| ribosomal RNA small subunit methyltransferase B [Vibrio vulnificus
           MO6-24/O]
          Length = 426

 Score = 45.9 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 2/87 (2%)

Query: 30  ALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSL 87
             L P  G++ILD     GG +    +  S   V+ALD D   +    E ++    Q  +
Sbjct: 237 NYLQPKDGELILDCCAAPGGKTAHILERVSAREVVALDCDEQRLKRVTENLKRLNLQAKV 296

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGVS 114
                   + +   +  D ++ D   S
Sbjct: 297 ICGDARNPEQWWQGEQFDRILLDAPCS 323


>gi|27364478|ref|NP_760006.1| 16S rRNA methyltransferase B [Vibrio vulnificus CMCP6]
 gi|46396909|sp|Q8DDE5|RSMB_VIBVU RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|27360597|gb|AAO09533.1| ribosomal RNA small subunit methyltransferase B [Vibrio vulnificus
           CMCP6]
          Length = 426

 Score = 45.9 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 2/87 (2%)

Query: 30  ALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSL 87
             L P  G++ILD     GG +    +  S   V+ALD D   +    E ++    Q  +
Sbjct: 237 NYLQPKDGELILDCCAAPGGKTAHILERVSAREVVALDCDEQRLKRVTENLKRLNLQAKV 296

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGVS 114
                   + +   +  D ++ D   S
Sbjct: 297 ICGDARNPEQWWQGEQFDRILLDAPCS 323


>gi|153212957|ref|ZP_01948551.1| sun protein [Vibrio cholerae 1587]
 gi|153826427|ref|ZP_01979094.1| sun protein [Vibrio cholerae MZO-2]
 gi|124116183|gb|EAY35003.1| sun protein [Vibrio cholerae 1587]
 gi|149739813|gb|EDM54008.1| sun protein [Vibrio cholerae MZO-2]
          Length = 434

 Score = 45.9 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQF 85
            +  L P  G++ILD     GG +    +      V+A+D D   +   +E ++  +   
Sbjct: 243 ALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLQLTA 302

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            +        Q +   +  D ++ D   S
Sbjct: 303 QVICGDARYPQQWWQGEQFDRILLDAPCS 331


>gi|297581922|ref|ZP_06943842.1| sun protein [Vibrio cholerae RC385]
 gi|297533789|gb|EFH72630.1| sun protein [Vibrio cholerae RC385]
          Length = 434

 Score = 45.9 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQF 85
            +  L P  G++ILD     GG +    +      V+A+D D   +   +E ++  +   
Sbjct: 243 ALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLQLTA 302

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            +        Q +   +  D ++ D   S
Sbjct: 303 QVICGDARYPQQWWQGEQFDRILLDAPCS 331


>gi|261250606|ref|ZP_05943181.1| ribosomal RNA small subunit methyltransferase B [Vibrio orientalis
           CIP 102891]
 gi|260939175|gb|EEX95162.1| ribosomal RNA small subunit methyltransferase B [Vibrio orientalis
           CIP 102891]
          Length = 426

 Score = 45.9 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 35/89 (39%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQF 85
            +  L P  G++ILD     GG +    +   +  V+A+D D   +    + +   + + 
Sbjct: 235 SVNYLQPQNGELILDCCAAPGGKTAHILEHTEDTEVVAIDCDAKRLDRVYDNLERLQLRA 294

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            +        Q++   +  D ++ D   S
Sbjct: 295 DVICGDARYPQEWWTGEKFDRILLDAPCS 323


>gi|324991319|gb|EGC23252.1| rRNA methylase [Streptococcus sanguinis SK353]
          Length = 183

 Score = 45.9 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 34/92 (36%), Gaps = 6/92 (6%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82
           +    +A +      +++DAT G  G+ +    K+   V A D    AV    + + +  
Sbjct: 7   MAHAFLAEVVTKED-IVVDATMGN-GHDTLFLAKLAKQVYAFDIQEQAVEKTHQRLSEAG 64

Query: 83  -EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
            +   L  A    L  Y         +F+LG 
Sbjct: 65  LDNVQLILAGHEILDQYTDHFK--AAIFNLGY 94


>gi|255505263|ref|ZP_05345115.3| putative rRNA methylase [Bryantella formatexigens DSM 14469]
 gi|255269025|gb|EET62230.1| putative rRNA methylase [Bryantella formatexigens DSM 14469]
          Length = 221

 Score = 45.9 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 34/85 (40%), Gaps = 5/85 (5%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETMRDYKE--QFSLF 88
              G + +DAT G G  ++  C        V+A D  P A+   +E +        + L 
Sbjct: 52  IHEGSLCIDATMGNGNDTQFLCTQAGRNGSVLAFDIQPAALEHTKERLAHALPYCNYQLI 111

Query: 89  QATFSQLQDYVPDKGVDGVVFDLGV 113
             +  +L  Y   +  D + F+LG 
Sbjct: 112 LDSHERLDAYAAPESADCIAFNLGY 136


>gi|203282572|pdb|3EEY|A Chain A, Crystal Structure Of Putative Rrna-Methylase From
           Clostridium Thermocellum
 gi|203282573|pdb|3EEY|B Chain B, Crystal Structure Of Putative Rrna-Methylase From
           Clostridium Thermocellum
 gi|203282574|pdb|3EEY|C Chain C, Crystal Structure Of Putative Rrna-Methylase From
           Clostridium Thermocellum
 gi|203282575|pdb|3EEY|D Chain D, Crystal Structure Of Putative Rrna-Methylase From
           Clostridium Thermocellum
 gi|203282576|pdb|3EEY|E Chain E, Crystal Structure Of Putative Rrna-Methylase From
           Clostridium Thermocellum
 gi|203282577|pdb|3EEY|F Chain F, Crystal Structure Of Putative Rrna-Methylase From
           Clostridium Thermocellum
 gi|203282578|pdb|3EEY|G Chain G, Crystal Structure Of Putative Rrna-Methylase From
           Clostridium Thermocellum
 gi|203282579|pdb|3EEY|H Chain H, Crystal Structure Of Putative Rrna-Methylase From
           Clostridium Thermocellum
 gi|203282580|pdb|3EEY|I Chain I, Crystal Structure Of Putative Rrna-Methylase From
           Clostridium Thermocellum
 gi|203282581|pdb|3EEY|J Chain J, Crystal Structure Of Putative Rrna-Methylase From
           Clostridium Thermocellum
          Length = 197

 Score = 45.9 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 6/85 (7%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK--EQFSLF 88
              G  ++DAT G G  +     +      V   D    A++   + + D    ++ +L 
Sbjct: 20  VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLI 79

Query: 89  QATFSQLQDYVPDKGVDGVVFDLGV 113
           +     +  Y+ D  V  V+F+LG 
Sbjct: 80  KDGHQNMDKYI-DCPVKAVMFNLGY 103


>gi|281417413|ref|ZP_06248433.1| putative rRNA methylase [Clostridium thermocellum JW20]
 gi|281408815|gb|EFB39073.1| putative rRNA methylase [Clostridium thermocellum JW20]
          Length = 188

 Score = 45.9 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 6/85 (7%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK--EQFSLF 88
              G  ++DAT G G  +     +      V   D    A++   + + D    ++ +L 
Sbjct: 19  VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLI 78

Query: 89  QATFSQLQDYVPDKGVDGVVFDLGV 113
           +     +  Y+ D  V  V+F+LG 
Sbjct: 79  KDGHQNMDKYI-DCPVKAVMFNLGY 102


>gi|170288214|ref|YP_001738452.1| hypothetical protein TRQ2_0413 [Thermotoga sp. RQ2]
 gi|170175717|gb|ACB08769.1| conserved hypothetical protein [Thermotoga sp. RQ2]
          Length = 254

 Score = 45.9 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 52/149 (34%), Gaps = 31/149 (20%)

Query: 29  IALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDR----------DPFAVSCG 74
           I  L P   +++LD TFG G  S +           VI L+                   
Sbjct: 85  IESLQPEGSELVLDTTFGLG--SEAILMAAFLPEGKVIGLEGSIHIYTVVKYGMENFETD 142

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
            + ++D  ++  L+ A F +     PD   D V  D        +       ++ S    
Sbjct: 143 IQWLKDALKRIELYHANFKEYIRSQPDNSFDVVYCD-----PMFENPV----YESSA--- 190

Query: 135 MRMSCSGISA-SDVVNQANVKDLTRILGI 162
             M+     A  D VN+ +++++ RI   
Sbjct: 191 --MNPLRPFAVYDTVNEEDIEEMLRIAKK 217


>gi|125973214|ref|YP_001037124.1| putative rRNA methylase [Clostridium thermocellum ATCC 27405]
 gi|256003689|ref|ZP_05428677.1| putative rRNA methylase [Clostridium thermocellum DSM 2360]
 gi|125713439|gb|ABN51931.1| putative rRNA methylase [Clostridium thermocellum ATCC 27405]
 gi|255992250|gb|EEU02344.1| putative rRNA methylase [Clostridium thermocellum DSM 2360]
 gi|316940556|gb|ADU74590.1| rRNA methylase [Clostridium thermocellum DSM 1313]
          Length = 188

 Score = 45.9 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 6/85 (7%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK--EQFSLF 88
              G  ++DAT G G  +     +      V   D    A++   + + D    ++ +L 
Sbjct: 19  VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLI 78

Query: 89  QATFSQLQDYVPDKGVDGVVFDLGV 113
           +     +  Y+ D  V  V+F+LG 
Sbjct: 79  KDGHQNMDKYI-DCPVKAVMFNLGY 102


>gi|229520215|ref|ZP_04409642.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae TM
           11079-80]
 gi|229342809|gb|EEO07800.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae TM
           11079-80]
          Length = 426

 Score = 45.9 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQF 85
            +  L P  G++ILD     GG +    +      V+A+D D   +   +E ++  +   
Sbjct: 235 ALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLQLTA 294

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            +        Q +   +  D ++ D   S
Sbjct: 295 QVICGDARYPQQWWQGEQFDRILLDAPCS 323


>gi|229530170|ref|ZP_04419559.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
           12129(1)]
 gi|229332303|gb|EEN97790.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
           12129(1)]
 gi|327482955|gb|AEA77362.1| Ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
           LMA3894-4]
          Length = 426

 Score = 45.9 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQF 85
            +  L P  G++ILD     GG +    +      V+A+D D   +   +E ++  +   
Sbjct: 235 ALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLQLTA 294

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            +        Q +   +  D ++ D   S
Sbjct: 295 QVICGDARYPQQWWQGEQFDRILLDAPCS 323


>gi|153821915|ref|ZP_01974582.1| sun protein [Vibrio cholerae B33]
 gi|254851609|ref|ZP_05240959.1| sun protein [Vibrio cholerae MO10]
 gi|126520535|gb|EAZ77758.1| sun protein [Vibrio cholerae B33]
 gi|254847314|gb|EET25728.1| sun protein [Vibrio cholerae MO10]
          Length = 434

 Score = 45.9 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQF 85
            +  L P  G++ILD     GG +    +      V+A+D D   +   +E ++  +   
Sbjct: 243 ALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLELTA 302

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            +        Q +   +  D ++ D   S
Sbjct: 303 QVICGDARYPQQWWQGEQFDRILLDAPCS 331


>gi|42783939|ref|NP_981186.1| hypothetical protein BCE_4893 [Bacillus cereus ATCC 10987]
 gi|42739869|gb|AAS43794.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
          Length = 190

 Score = 45.9 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 8/89 (8%)

Query: 33  NPAPGKVILDATFGAGGYS---RSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSL 87
               G   +DAT G G  +            V   D    A+      +++ +  E+  L
Sbjct: 17  AVKEGDYAVDATLGNGYDTCFLAEIVGDNGKVFGFDIQKEAIESSTTRLKEKELFERTVL 76

Query: 88  FQATFSQLQDYVPDK---GVDGVVFDLGV 113
              +   L   +P+     V G +F+LG 
Sbjct: 77  VHDSHDTLLSVLPEDAKGKVTGAIFNLGY 105


>gi|15640076|ref|NP_229703.1| sun protein [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121587275|ref|ZP_01677048.1| sun protein [Vibrio cholerae 2740-80]
 gi|121727862|ref|ZP_01680921.1| sun protein [Vibrio cholerae V52]
 gi|147675284|ref|YP_001218368.1| sun protein [Vibrio cholerae O395]
 gi|153817606|ref|ZP_01970273.1| sun protein [Vibrio cholerae NCTC 8457]
 gi|227080281|ref|YP_002808832.1| sun protein [Vibrio cholerae M66-2]
 gi|298501227|ref|ZP_07011026.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
           MAK 757]
 gi|46397040|sp|Q9KVU5|RSMB_VIBCH RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|9654437|gb|AAF93222.1| sun protein [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121548521|gb|EAX58577.1| sun protein [Vibrio cholerae 2740-80]
 gi|121629806|gb|EAX62221.1| sun protein [Vibrio cholerae V52]
 gi|126511874|gb|EAZ74468.1| sun protein [Vibrio cholerae NCTC 8457]
 gi|146317167|gb|ABQ21706.1| sun protein [Vibrio cholerae O395]
 gi|227008169|gb|ACP04381.1| sun protein [Vibrio cholerae M66-2]
 gi|227011953|gb|ACP08163.1| sun protein [Vibrio cholerae O395]
 gi|297540099|gb|EFH76161.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
           MAK 757]
          Length = 434

 Score = 45.9 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQF 85
            +  L P  G++ILD     GG +    +      V+A+D D   +   +E ++  +   
Sbjct: 243 ALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLELTA 302

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            +        Q +   +  D ++ D   S
Sbjct: 303 QVICGDARYPQQWWQGEQFDRILLDAPCS 331


>gi|153830135|ref|ZP_01982802.1| sun protein [Vibrio cholerae 623-39]
 gi|254225568|ref|ZP_04919177.1| sun protein [Vibrio cholerae V51]
 gi|254291095|ref|ZP_04961892.1| sun protein [Vibrio cholerae AM-19226]
 gi|125621888|gb|EAZ50213.1| sun protein [Vibrio cholerae V51]
 gi|148874399|gb|EDL72534.1| sun protein [Vibrio cholerae 623-39]
 gi|150422940|gb|EDN14890.1| sun protein [Vibrio cholerae AM-19226]
          Length = 434

 Score = 45.9 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQF 85
            +  L P  G++ILD     GG +    +      V+A+D D   +   +E ++  +   
Sbjct: 243 ALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLQLTA 302

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            +        Q +   +  D ++ D   S
Sbjct: 303 QVICGDARYPQQWWQGEQFDRILLDAPCS 331


>gi|153802771|ref|ZP_01957357.1| sun protein [Vibrio cholerae MZO-3]
 gi|124121684|gb|EAY40427.1| sun protein [Vibrio cholerae MZO-3]
          Length = 434

 Score = 45.9 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQF 85
            +  L P  G++ILD     GG +    +      V+A+D D   +   +E ++  +   
Sbjct: 243 ALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLQLTA 302

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            +        Q +   +  D ++ D   S
Sbjct: 303 QVICGDARYPQQWWQGEQFDRILLDAPCS 331


>gi|229515917|ref|ZP_04405374.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
           TMA 21]
 gi|229524946|ref|ZP_04414351.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
           bv. albensis VL426]
 gi|229338527|gb|EEO03544.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
           bv. albensis VL426]
 gi|229347017|gb|EEO11979.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
           TMA 21]
          Length = 426

 Score = 45.9 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQF 85
            +  L P  G++ILD     GG +    +      V+A+D D   +   +E ++  +   
Sbjct: 235 ALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLQLTA 294

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            +        Q +   +  D ++ D   S
Sbjct: 295 QVICGDARYPQQWWQGEQFDRILLDAPCS 323


>gi|229508329|ref|ZP_04397833.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae BX
           330286]
 gi|262155855|ref|ZP_06028977.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
           INDRE 91/1]
 gi|262166898|ref|ZP_06034619.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
           RC27]
 gi|229354602|gb|EEO19524.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae BX
           330286]
 gi|262024669|gb|EEY43349.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
           RC27]
 gi|262030307|gb|EEY48949.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
           INDRE 91/1]
          Length = 426

 Score = 45.9 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQF 85
            +  L P  G++ILD     GG +    +      V+A+D D   +   +E ++  +   
Sbjct: 235 ALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLELTA 294

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            +        Q +   +  D ++ D   S
Sbjct: 295 QVICGDARYPQQWWQGEQFDRILLDAPCS 323


>gi|262191295|ref|ZP_06049489.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae CT
           5369-93]
 gi|262032833|gb|EEY51377.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae CT
           5369-93]
          Length = 426

 Score = 45.9 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQF 85
            +  L P  G++ILD     GG +    +      V+A+D D   +   +E ++  +   
Sbjct: 235 ALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLQLTA 294

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            +        Q +   +  D ++ D   S
Sbjct: 295 QVICGDARYPQQWWQGEQFDRILLDAPCS 323


>gi|283788076|ref|YP_003367941.1| ribosomal RNA small subunit methyltransferase B [Citrobacter
           rodentium ICC168]
 gi|282951530|emb|CBG91229.1| ribosomal RNA small subunit methyltransferase B [Citrobacter
           rodentium ICC168]
          Length = 429

 Score = 45.9 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 36/89 (40%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQF 85
            +A L P  G+ ILD     GG +    +   +  V+A+D D   +S   + ++      
Sbjct: 238 CVAFLAPQNGEQILDLCAAPGGKTTHILEAAPDAKVLAVDVDEQRLSRVYDNLKRLGMNA 297

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
           ++ Q        +  ++  D ++ D   S
Sbjct: 298 TVKQGDGRYPLQWCGEQQFDRILLDAPCS 326


>gi|229508832|ref|ZP_04398323.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
           B33]
 gi|229517103|ref|ZP_04406549.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
           RC9]
 gi|229606604|ref|YP_002877252.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
           MJ-1236]
 gi|255746774|ref|ZP_05420720.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholera
           CIRS 101]
 gi|229346166|gb|EEO11138.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
           RC9]
 gi|229354107|gb|EEO19039.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
           B33]
 gi|229369259|gb|ACQ59682.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
           MJ-1236]
 gi|255735531|gb|EET90930.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholera
           CIRS 101]
          Length = 426

 Score = 45.9 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQF 85
            +  L P  G++ILD     GG +    +      V+A+D D   +   +E ++  +   
Sbjct: 235 ALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLELTA 294

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            +        Q +   +  D ++ D   S
Sbjct: 295 QVICGDARYPQQWWQGEQFDRILLDAPCS 323


>gi|229152949|ref|ZP_04281131.1| hypothetical protein bcere0011_44810 [Bacillus cereus m1550]
 gi|228630562|gb|EEK87209.1| hypothetical protein bcere0011_44810 [Bacillus cereus m1550]
          Length = 177

 Score = 45.9 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 30/90 (33%), Gaps = 10/90 (11%)

Query: 33  NPAPGKVILDATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFS 86
               G   +DAT G  G+              V   D    A+      +++ K  E+  
Sbjct: 4   AVKEGDYAVDATLGN-GHDTCFLAEIVGNNGKVFGFDIQKEAIESSTTRLKEKKLFERTV 62

Query: 87  LFQATFSQLQDYVP---DKGVDGVVFDLGV 113
           L   +   L   +P      V G +F+LG 
Sbjct: 63  LVHDSHDTLLSILPGDAKGKVTGAIFNLGY 92


>gi|30022820|ref|NP_834451.1| SAM-dependent methyltransferase [Bacillus cereus ATCC 14579]
 gi|29898379|gb|AAP11652.1| SAM-dependent methyltransferase [Bacillus cereus ATCC 14579]
          Length = 190

 Score = 45.9 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 10/90 (11%)

Query: 33  NPAPGKVILDATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFS 86
               G   +DAT G  G+              V   D    A+      +++ +  E+  
Sbjct: 17  AVKEGDYAVDATLGN-GHDTCFLAEIVGDNGKVFGFDIQKEAIESSTTRLKEKELFERTV 75

Query: 87  LFQATFSQLQDYVPDK---GVDGVVFDLGV 113
           L   +   L   +P+     V G +F+LG 
Sbjct: 76  LVHDSHDTLLSILPEDAKGKVTGAIFNLGY 105


>gi|315230766|ref|YP_004071202.1| ribosomal RNA small subunit methyltransferase B [Thermococcus
           barophilus MP]
 gi|315183794|gb|ADT83979.1| ribosomal RNA small subunit methyltransferase B [Thermococcus
           barophilus MP]
          Length = 465

 Score = 45.9 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 30/83 (36%), Gaps = 4/83 (4%)

Query: 32  LNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQFSL 87
           L+P PG  ++D     GG   +     +    + A D D F +   +E ++        +
Sbjct: 269 LDPKPGMTVVDLAAAPGGKTSHIAELMRNKGKIYAFDIDEFRIKRMKEILKRMGVNIVKI 328

Query: 88  FQATFSQLQDYVPDKGVDGVVFD 110
            +    +    +     D V+ D
Sbjct: 329 IRKDGRKAPKILGRGIADRVLLD 351


>gi|332358319|gb|EGJ36145.1| rRNA methylase [Streptococcus sanguinis SK355]
          Length = 183

 Score = 45.9 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 6/92 (6%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82
           +    +A +       ++DAT G  G+ +    K+   V A D    AV   ++ + +  
Sbjct: 7   MAHAFLAEVVTKED-TVVDATMGN-GHDTLFLAKLAKQVYAFDIQEQAVEKTRQRLAEAG 64

Query: 83  -EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
            +   L  A    L  Y+        +F+LG 
Sbjct: 65  LDNAQLILAGHETLDQYLDHFK--AAIFNLGY 94


>gi|328863984|gb|EGG13083.1| hypothetical protein MELLADRAFT_32431 [Melampsora larici-populina
           98AG31]
          Length = 218

 Score = 45.9 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 2/73 (2%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96
           VI+DA  GAGG +  F      VIA+D DP  ++  +     Y   ++     A F +  
Sbjct: 41  VIVDAFCGAGGNAIQFASTSDRVIAIDIDPNKIALAEHNATVYGVEDKIEFICADFIEWI 100

Query: 97  DYVPDKGVDGVVF 109
                  VD +  
Sbjct: 101 QNQEKGSVDVIFL 113


>gi|206969833|ref|ZP_03230787.1| conserved hypothetical protein [Bacillus cereus AH1134]
 gi|206735521|gb|EDZ52689.1| conserved hypothetical protein [Bacillus cereus AH1134]
          Length = 190

 Score = 45.9 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 10/90 (11%)

Query: 33  NPAPGKVILDATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFS 86
               G   +DAT G  G+              V   D    A+      +++ +  E+  
Sbjct: 17  AVKEGDYAVDATLGN-GHDTCFLAEIVGDSGKVFGFDIQKEAIESSTTRLKEKELFERTV 75

Query: 87  LFQATFSQLQDYVPDK---GVDGVVFDLGV 113
           L   +   L   +P+     V G +F+LG 
Sbjct: 76  LVHDSHDTLLSVLPEDAKGKVTGAIFNLGY 105


>gi|226953279|ref|ZP_03823743.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter sp.
           ATCC 27244]
 gi|226835967|gb|EEH68350.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter sp.
           ATCC 27244]
          Length = 435

 Score = 45.9 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 2/86 (2%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88
           LL    GKV++DA    GG +    +  +   +IA+D+DP  +    E +          
Sbjct: 242 LLPDLDGKVVVDACAAPGGKTAHILERFNPKKLIAIDQDPKRIVRIGENLERLALNLDNV 301

Query: 89  QATFSQLQDYVPDKGVDGVVFDLGVS 114
           +   +    +   + VD +V D   S
Sbjct: 302 EILVADATTWQAQEPVDCIVLDAPCS 327


>gi|194036729|ref|XP_001927911.1| PREDICTED: trimethylguanosine synthase [Sus scrofa]
          Length = 851

 Score = 45.9 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 2/68 (2%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96
           +++DA  G GG +  F   G  VIA+D DP  +   +     Y   ++    Q  F QL 
Sbjct: 691 IVVDAFCGVGGNTIQFALTGKRVIAIDIDPVKIDLARNNAEVYGVADKIEFIQGDFLQLA 750

Query: 97  DYVPDKGV 104
             +    V
Sbjct: 751 PRLKADVV 758


>gi|30264819|ref|NP_847196.1| hypothetical protein BA_5002 [Bacillus anthracis str. Ames]
 gi|47530304|ref|YP_021653.1| hypothetical protein GBAA_5002 [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49187638|ref|YP_030891.1| hypothetical protein BAS4647 [Bacillus anthracis str. Sterne]
 gi|65322120|ref|ZP_00395079.1| COG0500: SAM-dependent methyltransferases [Bacillus anthracis str.
           A2012]
 gi|165869764|ref|ZP_02214422.1| conserved hypothetical protein [Bacillus anthracis str. A0488]
 gi|167633949|ref|ZP_02392272.1| conserved hypothetical protein [Bacillus anthracis str. A0442]
 gi|167638131|ref|ZP_02396409.1| conserved hypothetical protein [Bacillus anthracis str. A0193]
 gi|170685777|ref|ZP_02877000.1| conserved hypothetical protein [Bacillus anthracis str. A0465]
 gi|170705366|ref|ZP_02895830.1| conserved hypothetical protein [Bacillus anthracis str. A0389]
 gi|177651183|ref|ZP_02934014.1| conserved hypothetical protein [Bacillus anthracis str. A0174]
 gi|190568308|ref|ZP_03021216.1| conserved hypothetical protein [Bacillus anthracis Tsiankovskii-I]
 gi|227817544|ref|YP_002817553.1| hypothetical protein BAMEG_5036 [Bacillus anthracis str. CDC 684]
 gi|229604073|ref|YP_002869027.1| hypothetical protein BAA_5015 [Bacillus anthracis str. A0248]
 gi|254687560|ref|ZP_05151416.1| hypothetical protein BantC_27450 [Bacillus anthracis str.
           CNEVA-9066]
 gi|254725125|ref|ZP_05186908.1| hypothetical protein BantA1_22099 [Bacillus anthracis str. A1055]
 gi|254736863|ref|ZP_05194569.1| hypothetical protein BantWNA_16981 [Bacillus anthracis str. Western
           North America USA6153]
 gi|254741898|ref|ZP_05199585.1| hypothetical protein BantKB_12908 [Bacillus anthracis str. Kruger
           B]
 gi|254754504|ref|ZP_05206539.1| hypothetical protein BantV_18637 [Bacillus anthracis str. Vollum]
 gi|254757337|ref|ZP_05209364.1| hypothetical protein BantA9_03431 [Bacillus anthracis str.
           Australia 94]
 gi|30259494|gb|AAP28682.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
 gi|47505452|gb|AAT34128.1| conserved hypothetical protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49181565|gb|AAT56941.1| conserved hypothetical protein [Bacillus anthracis str. Sterne]
 gi|164714593|gb|EDR20112.1| conserved hypothetical protein [Bacillus anthracis str. A0488]
 gi|167513948|gb|EDR89316.1| conserved hypothetical protein [Bacillus anthracis str. A0193]
 gi|167530750|gb|EDR93452.1| conserved hypothetical protein [Bacillus anthracis str. A0442]
 gi|170129491|gb|EDS98354.1| conserved hypothetical protein [Bacillus anthracis str. A0389]
 gi|170670241|gb|EDT20981.1| conserved hypothetical protein [Bacillus anthracis str. A0465]
 gi|172083009|gb|EDT68071.1| conserved hypothetical protein [Bacillus anthracis str. A0174]
 gi|190560564|gb|EDV14541.1| conserved hypothetical protein [Bacillus anthracis Tsiankovskii-I]
 gi|227006163|gb|ACP15906.1| conserved hypothetical protein [Bacillus anthracis str. CDC 684]
 gi|229268481|gb|ACQ50118.1| conserved hypothetical protein [Bacillus anthracis str. A0248]
          Length = 190

 Score = 45.9 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 10/90 (11%)

Query: 33  NPAPGKVILDATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFS 86
               G   +DAT G  G+              V   D    A+      +++ +  E+  
Sbjct: 17  AVKEGDYAVDATLGN-GHDTCFLAEIVGDSGKVFGFDIQKEAIESSTTRLKEKELFERTV 75

Query: 87  LFQATFSQLQDYVPDK---GVDGVVFDLGV 113
           L   +   L   +P+     V G +F+LG 
Sbjct: 76  LVHDSHDTLLSVLPEDAKGKVTGAIFNLGY 105


>gi|156548692|ref|XP_001602591.1| PREDICTED: similar to prip interacting protein. pimt [Nasonia
           vitripennis]
          Length = 577

 Score = 45.6 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 36/105 (34%), Gaps = 16/105 (15%)

Query: 41  LDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQDY 98
           +DA  GAGG S SF      V A+D DP  +   +   R Y   ++       F  L + 
Sbjct: 424 IDAFCGAGGNSISFAFTCERVYAIDIDPKKIEMARHNARIYGVEDRIEFIIGDFFCLAER 483

Query: 99  VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR--MSCSG 141
           +          D+   S          S+ +    D+   M   G
Sbjct: 484 L--------FGDVVFLSPPWGGP----SYIQDKSFDIENIMDPHG 516


>gi|332193981|gb|AEE32102.1| S-adenosylmethionine-dependent methyltransferase domain-containing
           protein [Arabidopsis thaliana]
          Length = 538

 Score = 45.6 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 2/69 (2%)

Query: 38  KVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQL 95
            +++D   G GG +  F      VIA+D DP  +   +     Y   ++    +  F  L
Sbjct: 370 GIVIDCFTGVGGNAIQFASRSHYVIAIDLDPKKLDLAKHNAAIYGVADKIDFVKGDFFDL 429

Query: 96  QDYVPDKGV 104
              +    V
Sbjct: 430 AHNLKAGTV 438


>gi|260581738|ref|ZP_05849535.1| SAM-dependent methyltransferase [Haemophilus influenzae NT127]
 gi|260095331|gb|EEW79222.1| SAM-dependent methyltransferase [Haemophilus influenzae NT127]
          Length = 254

 Score = 45.6 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 66/174 (37%), Gaps = 29/174 (16%)

Query: 22  PVLLEKVIA---LLNPAP---GKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCG 74
           P+ L ++I    +L+  P   GK +LD   G GG+ + + + G + VI  D     +   
Sbjct: 24  PISLNEIIEKPTMLSLLPNLKGKKLLDLGCGTGGHLQLYLERGAAKVIGTDLSEKMLEQA 83

Query: 75  QETMR---DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           ++ ++    +  +FSL+     +L + +P+   D +      SS         F+F    
Sbjct: 84  EKDLQKCGQFSGRFSLYHLPMEKLAE-LPESHFDVI-----TSS---------FAFHYIE 128

Query: 132 PLDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
                +S     +S++  +  +    +T        E+         V  R + 
Sbjct: 129 NFPTLLSTIHDKLSSNGTLIFSQEHPITTCHKE--GERWEKNDKKQQVAYRLNH 180


>gi|257418397|ref|ZP_05595391.1| SAM-dependent methyltransferase [Enterococcus faecalis T11]
 gi|257160225|gb|EEU90185.1| SAM-dependent methyltransferase [Enterococcus faecalis T11]
 gi|315148160|gb|EFT92176.1| rRNA methylase family protein [Enterococcus faecalis TX4244]
 gi|315166998|gb|EFU11015.1| rRNA methylase family protein [Enterococcus faecalis TX1341]
          Length = 187

 Score = 45.6 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 13/97 (13%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMR 79
           LL++V+      PG  ++DAT G  G+  +F          V A D    A+   ++ + 
Sbjct: 12  LLKEVVE-----PGDFVIDATMGN-GHDTAFLAELVGPSGEVFAFDIQKEALINTEQKLT 65

Query: 80  DYK--EQFSLFQATFSQLQDYV-PDKGVDGVVFDLGV 113
           +     Q +LF      L   +  +  +   +F+LG 
Sbjct: 66  ELNLLSQTTLFPLGHEHLHAVLDEETEITAAIFNLGY 102


>gi|42571775|ref|NP_973978.1| WW domain-containing protein [Arabidopsis thaliana]
          Length = 538

 Score = 45.6 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 2/69 (2%)

Query: 38  KVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQL 95
            +++D   G GG +  F      VIA+D DP  +   +     Y   ++    +  F  L
Sbjct: 368 GIVIDCFTGVGGNAIQFASRSHYVIAIDLDPKKLDLAKHNAAIYGVADKIDFVKGDFFDL 427

Query: 96  QDYVPDKGV 104
              +    V
Sbjct: 428 AHNLKAGTV 436


>gi|329664270|ref|NP_001192627.1| trimethylguanosine synthase [Bos taurus]
 gi|297482318|ref|XP_002692697.1| PREDICTED: hypothetical protein [Bos taurus]
 gi|296480654|gb|DAA22769.1| hypothetical protein BOS_13850 [Bos taurus]
          Length = 852

 Score = 45.6 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 2/69 (2%)

Query: 38  KVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQL 95
             I+DA  G GG +  F   G  VIA+D DP  +   +     Y   ++       F QL
Sbjct: 691 GTIVDAFCGVGGNTIQFALTGKRVIAIDIDPVKIDLARNNAEIYGVVDKIEFICGDFLQL 750

Query: 96  QDYVPDKGV 104
              +    V
Sbjct: 751 ASSLKADVV 759


>gi|297851504|ref|XP_002893633.1| hypothetical protein ARALYDRAFT_336158 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297339475|gb|EFH69892.1| hypothetical protein ARALYDRAFT_336158 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 233

 Score = 45.6 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 42/122 (34%), Gaps = 12/122 (9%)

Query: 37  GKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQ 94
           GKV++D   G GG +  F K+ S+V+A+D DP  V         Y    +       F Q
Sbjct: 74  GKVVIDCFSGVGGNTIQFAKVCSSVVAIDIDPVKVELAMNNAMVYGVANRVDFVIGDFIQ 133

Query: 95  LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVK 154
           L   +     D V              +   S++    LDM     G S   +       
Sbjct: 134 LAPSLKG---DVVFLSPPWGGPMYRDVE---SYK----LDMLQPRDGYSLFQIAQSITPN 183

Query: 155 DL 156
            +
Sbjct: 184 II 185


>gi|291546556|emb|CBL19664.1| Predicted S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [Ruminococcus sp. SR1/5]
          Length = 188

 Score = 45.6 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 5/83 (6%)

Query: 36  PGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMR--DYKEQFSLFQA 90
           PG + +DAT G G  +    ++      V+A D    A+   +E ++  +  E + L   
Sbjct: 20  PGDICIDATMGNGNDTALLSQLAGKRGRVLAFDIQKQALEHTKERLKRDNCPENYQLLLE 79

Query: 91  TFSQLQDYVPDKGVDGVVFDLGV 113
           +   +  Y  ++ V  + F+LG 
Sbjct: 80  SHENMDVYAEEETVSCITFNLGY 102


>gi|71409126|ref|XP_806926.1| proliferator-activated receptor-interacting protein (PRIP)
           interacting protein (PIMT) [Trypanosoma
 gi|70870807|gb|EAN85075.1| proliferator-activated receptor-interacting protein (PRIP)
           interacting protein (PIMT), putative [Trypanosoma cruzi]
          Length = 200

 Score = 45.6 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 4/70 (5%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQ 96
            +LD   G GG +    ++   V+A+D DP A+   ++ +  Y   ++ S +   F  L+
Sbjct: 63  CVLDLFCGCGGDTVQLARVYEKVVAVDIDPDAIEAAKKNVEVYGVGDRVSFYCCDFRTLK 122

Query: 97  DYVPDKGVDG 106
             + +   D 
Sbjct: 123 --LDNMEFDA 130


>gi|71409977|ref|XP_807306.1| proliferator-activated receptor-interacting protein (PRIP)
           interacting protein (PIMT) [Trypanosoma
 gi|70871278|gb|EAN85455.1| proliferator-activated receptor-interacting protein (PRIP)
           interacting protein (PIMT), putative [Trypanosoma cruzi]
          Length = 250

 Score = 45.6 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 4/70 (5%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQ 96
            +LD   G GG +    ++   V+A+D DP A+   ++ +  Y   ++ S +   F  L+
Sbjct: 63  CVLDLFCGCGGDTVQLARVYEKVVAVDIDPDAIEAAKKNVEVYGVGDRVSFYCCDFRTLK 122

Query: 97  DYVPDKGVDG 106
             + +   D 
Sbjct: 123 --LDNMEFDA 130


>gi|126465287|ref|YP_001040396.1| Fmu (Sun) domain-containing protein [Staphylothermus marinus F1]
 gi|126014110|gb|ABN69488.1| Fmu (Sun) domain protein [Staphylothermus marinus F1]
          Length = 449

 Score = 45.6 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 36/88 (40%), Gaps = 4/88 (4%)

Query: 32  LNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ-FSL 87
           L+P PG  ++D     GG   +          + A D D   ++  ++ +R    +   +
Sbjct: 253 LDPKPGMTVVDMAAAPGGKTQHMAELMNNEGVIYAFDIDEKRIARMRDILRRTGVRNARI 312

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGVSS 115
           ++    +  D + ++  D V+ D   SS
Sbjct: 313 YREDSRKAPDILGEEIADRVLLDAPCSS 340


>gi|55821621|ref|YP_140063.1| rRNA methylase [Streptococcus thermophilus LMG 18311]
 gi|116628334|ref|YP_820953.1| rRNA methylase (SAM-dependent methyltransferase superfamily),
           putative [Streptococcus thermophilus LMD-9]
 gi|55737606|gb|AAV61248.1| rRNA methylase (SAM-dependent methyltransferase superfamily),
           putative [Streptococcus thermophilus LMG 18311]
 gi|116101611|gb|ABJ66757.1| SAM-dependent methyltransferase [Streptococcus thermophilus LMD-9]
 gi|312278960|gb|ADQ63617.1| RRNA methylase (SAM-dependent methyltransferase superfamily),
           putative [Streptococcus thermophilus ND03]
          Length = 182

 Score = 45.6 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 7/90 (7%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-E 83
           L +V+         +++DAT G G  +     +   V A D    A+    + + D   E
Sbjct: 13  LAEVLD-----DESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLGIE 67

Query: 84  QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
              L       L  YV +  +   +F+LG 
Sbjct: 68  NTELILDGHENLDHYVREP-IRAAIFNLGY 96


>gi|325968037|ref|YP_004244229.1| Fmu (Sun) domain protein [Vulcanisaeta moutnovskia 768-28]
 gi|323707240|gb|ADY00727.1| Fmu (Sun) domain protein [Vulcanisaeta moutnovskia 768-28]
          Length = 404

 Score = 45.6 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 7/90 (7%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETMRDYKE- 83
           V  +L+P PG VI+D     GG +    ++G     V A DR    +    E +      
Sbjct: 198 VTHILDPRPGDVIVDMNAAPGGKTSHIVQLGGGKAVVYAFDRSENKIREIIENLSRLGMD 257

Query: 84  ---QFSLFQATFSQLQDYVPDKGVDGVVFD 110
              +  +    F  + +      VD ++ D
Sbjct: 258 SLYRVEVRDTRFLDIDEPDLINSVDKILID 287


>gi|268316762|ref|YP_003290481.1| putative rRNA methylase [Rhodothermus marinus DSM 4252]
 gi|262334296|gb|ACY48093.1| putative rRNA methylase [Rhodothermus marinus DSM 4252]
          Length = 187

 Score = 45.6 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 41/99 (41%), Gaps = 11/99 (11%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMR 79
           L  +++A     PG++ +DAT G  G+   F         +V   D    A++  +  + 
Sbjct: 2   LAHRIVAS-VLQPGEMAVDATVGN-GHDTLFLARQVGPQGHVYGFDVQEEALARTRRRLE 59

Query: 80  DYK--EQFSLFQATFSQLQDYVP---DKGVDGVVFDLGV 113
           +    E+ +L +     +   VP      +  V+F+LG 
Sbjct: 60  EAGLHERVTLLRMGHEHMAKAVPVAWHGRIGAVMFNLGY 98


>gi|332367422|gb|EGJ45155.1| rRNA methylase [Streptococcus sanguinis SK1059]
          Length = 183

 Score = 45.6 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 6/92 (6%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82
           +    +A +       ++DAT G  G+ +    ++   V A D    AV    + + +  
Sbjct: 7   MAHAFLAEVVTKED-TVVDATMGN-GHDTLFLAQLAKQVYAFDIQEQAVEKTCQRLAEAG 64

Query: 83  -EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
            +   L  A    L  Y         +F+LG 
Sbjct: 65  LDNVQLILAGHETLDQYTDHFK--AAIFNLGY 94


>gi|307824127|ref|ZP_07654354.1| putative rRNA methylase [Methylobacter tundripaludum SV96]
 gi|307734911|gb|EFO05761.1| putative rRNA methylase [Methylobacter tundripaludum SV96]
          Length = 191

 Score = 45.6 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 10/88 (11%)

Query: 35  APGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQE--TMRDYKEQFSLF 88
            PG + +DAT G  G+   F         +V   D    A+    E        E  +L 
Sbjct: 19  RPGDIAIDATVGN-GHDTVFLAEQVGPSGHVYGFDIQQAAIDSTLEKFRQAPSPEYLTLI 77

Query: 89  QATFSQLQDYVPDK---GVDGVVFDLGV 113
            A+ + + + +P      V  ++F+LG 
Sbjct: 78  HASHADMDEKIPAYHHGKVRVIMFNLGY 105


>gi|297583531|ref|YP_003699311.1| putative rRNA methylase [Bacillus selenitireducens MLS10]
 gi|297141988|gb|ADH98745.1| putative rRNA methylase [Bacillus selenitireducens MLS10]
          Length = 188

 Score = 45.6 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 8/86 (9%)

Query: 35  APGKVILDATFGAGGY-SRSFCK---MGSNVIALDRDPFAVSCGQETMRDYK--EQFSLF 88
             G  ++DAT G  G+ +    +      +V   D    A+      ++     E+ +L 
Sbjct: 19  QEGDTVVDATVGN-GHDTVYLAELVGASGSVYGFDIQKTALDATLNKLQQKGLEERVALI 77

Query: 89  QATFSQLQDYVP-DKGVDGVVFDLGV 113
                QL  Y+P +K V   VF+LG 
Sbjct: 78  HDGHEQLGAYIPQEKTVHAAVFNLGY 103


>gi|218905984|ref|YP_002453818.1| hypothetical protein BCAH820_4872 [Bacillus cereus AH820]
 gi|218536553|gb|ACK88951.1| conserved hypothetical protein [Bacillus cereus AH820]
          Length = 190

 Score = 45.6 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 10/90 (11%)

Query: 33  NPAPGKVILDATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFS 86
               G   +DAT G  G+              V   D    A+      +++ +  E+  
Sbjct: 17  AVKEGDYAVDATLGN-GHDTCFLAEIVGDSGKVFGFDIQKEAIESSTTRLKEKELFERTV 75

Query: 87  LFQATFSQLQDYVPD---KGVDGVVFDLGV 113
           L   +   L   +P+     V G +F+LG 
Sbjct: 76  LVHDSHDTLLSVLPEGAKGKVTGAIFNLGY 105


>gi|6634778|gb|AAF19758.1|AC009917_17 Contains similarity to gi|629253 lmbW protein from Streptomyces
           lincolnensis [Arabidopsis thaliana]
 gi|332193121|gb|AEE31242.1| S-adenosyl-L-methionine-dependent methyltransferase
           domain-containing protein [Arabidopsis thaliana]
          Length = 455

 Score = 45.6 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 41/122 (33%), Gaps = 12/122 (9%)

Query: 37  GKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQ 94
           GKV++D   G GG +  F K+ S+V+A+D DP  V         Y    +       F Q
Sbjct: 296 GKVVIDCFSGVGGNTIQFAKVCSSVVAIDIDPVKVELAMNNAMVYGVANRVDFVIGDFIQ 355

Query: 95  LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVK 154
           L   +     D V              +   S+     LDM     G S   +       
Sbjct: 356 LAPSLKG---DVVFLSPPWGGPMYRDFE---SYN----LDMLQPRDGYSLFQIAQSITPN 405

Query: 155 DL 156
            +
Sbjct: 406 II 407


>gi|30691953|ref|NP_174343.2| unknown protein [Arabidopsis thaliana]
          Length = 391

 Score = 45.6 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 41/122 (33%), Gaps = 12/122 (9%)

Query: 37  GKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQ 94
           GKV++D   G GG +  F K+ S+V+A+D DP  V         Y    +       F Q
Sbjct: 232 GKVVIDCFSGVGGNTIQFAKVCSSVVAIDIDPVKVELAMNNAMVYGVANRVDFVIGDFIQ 291

Query: 95  LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVK 154
           L   +     D V              +   S+     LDM     G S   +       
Sbjct: 292 LAPSLKG---DVVFLSPPWGGPMYRDFE---SYN----LDMLQPRDGYSLFQIAQSITPN 341

Query: 155 DL 156
            +
Sbjct: 342 II 343


>gi|225871129|ref|YP_002747076.1| rRNA methylase [Streptococcus equi subsp. equi 4047]
 gi|225700533|emb|CAW95003.1| putative rRNA methylase [Streptococcus equi subsp. equi 4047]
          Length = 185

 Score = 45.6 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 7/90 (7%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-E 83
           L++V+   + A     +DAT G G  +     +   V A D    A++  QE +      
Sbjct: 13  LKEVLDKQSIA-----VDATMGNGYDTAFLASLSQRVYAFDVQQQALTKTQERLEQQGLT 67

Query: 84  QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
              L  A   Q+  YV +  +   +F+LG 
Sbjct: 68  NAELILAGHEQVDQYVKEP-IRAAIFNLGY 96


>gi|229019986|ref|ZP_04176776.1| hypothetical protein bcere0030_44840 [Bacillus cereus AH1273]
 gi|229026221|ref|ZP_04182581.1| hypothetical protein bcere0029_44990 [Bacillus cereus AH1272]
 gi|228735067|gb|EEL85702.1| hypothetical protein bcere0029_44990 [Bacillus cereus AH1272]
 gi|228741307|gb|EEL91517.1| hypothetical protein bcere0030_44840 [Bacillus cereus AH1273]
          Length = 177

 Score = 45.6 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 10/90 (11%)

Query: 33  NPAPGKVILDATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFS 86
               G   +DAT G  G+              V   D    A+      +++ +  E+  
Sbjct: 4   AVKEGDYAIDATLGN-GHDTCFLAEIVGDNGKVFGFDIQKEAIESSTIRLKEKELFERTV 62

Query: 87  LFQATFSQLQDYVPDK---GVDGVVFDLGV 113
           L   +   L   +P+     V G +F+LG 
Sbjct: 63  LVHDSHDTLLSVLPEDAKGKVTGAIFNLGY 92


>gi|242764673|ref|XP_002340822.1| RNA methylase family protein, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218724018|gb|EED23435.1| RNA methylase family protein, putative [Talaromyces stipitatus ATCC
           10500]
          Length = 242

 Score = 45.6 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 55/133 (41%), Gaps = 14/133 (10%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMRDYK--EQFSLFQ 89
           P    V++DA  GAGG S +F K G    V A+++DP  ++C +   + Y    + + F+
Sbjct: 72  PKDKVVLIDAFAGAGGNSIAFAKSGRWKRVYAIEKDPAVLACAKHNAKIYGVQSKITWFE 131

Query: 90  A-TFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVV 148
              F  L+ ++ D G   VVF     S           ++     +++ +    S   + 
Sbjct: 132 GDCFEILKTHLKDLGFYSVVFA----SPPWGGPG----YRSDEVFNLQ-TMEPYSLGHLY 182

Query: 149 NQANVKDLTRILG 161
            + +      +L 
Sbjct: 183 REYSAFSKHIVLY 195


>gi|284006133|emb|CBA71374.1| 16S rRNA methyltransferase B [Arsenophonus nasoniae]
          Length = 426

 Score = 45.6 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 38/91 (41%), Gaps = 2/91 (2%)

Query: 26  EKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKE 83
           ++ + LL P  G+ ILD     GG +    ++    +V+A+D D   +   QE +   K 
Sbjct: 236 QRCVELLAPKNGEYILDLCAAPGGKTTYILELAPKADVLAVDIDQLRIKRIQENLNRVKL 295

Query: 84  QFSLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
              +      +  +++     D ++ D   S
Sbjct: 296 HARVIVGDGRKPLEWISGAKFDRILLDAPCS 326


>gi|269103777|ref|ZP_06156474.1| ribosomal RNA small subunit methyltransferase B [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268163675|gb|EEZ42171.1| ribosomal RNA small subunit methyltransferase B [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 308

 Score = 45.6 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQF 85
            I  L P  G++ILD     GG +    +   +  V+A+D D   ++   + ++    Q 
Sbjct: 118 AIEYLQPQAGELILDCCAAPGGKTAHILEHVPSAQVVAIDCDEHRLARVHDNLQRLNLQA 177

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            +  A     + +      D ++ D   S
Sbjct: 178 KVLCADARYPEKWWDGDKFDRILLDAPCS 206


>gi|325109448|ref|YP_004270516.1| rRNA methylase [Planctomyces brasiliensis DSM 5305]
 gi|324969716|gb|ADY60494.1| rRNA methylase [Planctomyces brasiliensis DSM 5305]
          Length = 185

 Score = 45.6 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 44/104 (42%), Gaps = 12/104 (11%)

Query: 20  HVP-V-LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSC 73
           H+  V +    +      PG  ++DAT G  G+              V A D  P A+  
Sbjct: 3   HISLVDMAHAAVQQ-AVQPGDCVIDATAGN-GHDTLILAEAVFPEGQVHAFDIQPSAIEQ 60

Query: 74  GQETM-RDYKEQFSLFQATFSQLQDYVPDKG---VDGVVFDLGV 113
            +  +  +     SL+QA+ +++  ++P +    V  ++F+LG 
Sbjct: 61  TRLRLPANLSSIVSLYQASHAEMPLHLPPESRGQVAAILFNLGY 104


>gi|297526431|ref|YP_003668455.1| Fmu (Sun) domain protein [Staphylothermus hellenicus DSM 12710]
 gi|297255347|gb|ADI31556.1| Fmu (Sun) domain protein [Staphylothermus hellenicus DSM 12710]
          Length = 449

 Score = 45.6 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 38/88 (43%), Gaps = 4/88 (4%)

Query: 32  LNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETMRDYKEQF-SL 87
           L+P PG  ++D     GG ++   ++  N   + A D D   +   Q  +R    +   +
Sbjct: 253 LDPKPGMTVVDMAAAPGGKTQHIAELMGNEGVIYAFDVDKKRIDRMQGILRRTGVRIAKI 312

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGVSS 115
           ++    +  + + +K  D V+ D   SS
Sbjct: 313 YREDSRKAPEILGEKIADRVLLDAPCSS 340


>gi|221135270|ref|ZP_03561573.1| 16S rRNA m(5)C 967 methyltransferase [Glaciecola sp. HTCC2999]
          Length = 442

 Score = 45.6 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 35/88 (39%), Gaps = 3/88 (3%)

Query: 30  ALLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCGQETMRDYKEQFS 86
            LL+  PG  +LD     GG +         +   +A+D DP  +   +E +     + +
Sbjct: 241 QLLDVQPGHRVLDCCAAPGGKTAHILASQPELEECVAIDNDPSRLVRVEENLARLGHEAT 300

Query: 87  LFQATFSQLQDYVPDKGVDGVVFDLGVS 114
           L  A    ++ +   +  D ++ D   S
Sbjct: 301 LICAAAEDVEGWYGGEPFDRILLDAPCS 328


>gi|225867956|ref|YP_002743904.1| rRNA methylase [Streptococcus equi subsp. zooepidemicus]
 gi|225701232|emb|CAW98182.1| putative rRNA methylase [Streptococcus equi subsp. zooepidemicus]
          Length = 185

 Score = 45.6 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 7/90 (7%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-E 83
           L++V+   + A     +DAT G G  +     +   V A D    A++  QE +      
Sbjct: 13  LKEVLDKQSIA-----VDATMGNGYDTAFLASLSQRVYAFDVQQQALTKTQERLEQQGLT 67

Query: 84  QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
              L  A   Q+  YV +  +   +F+LG 
Sbjct: 68  NAELILAGHEQVDQYVKEP-IRAAIFNLGY 96


>gi|196041491|ref|ZP_03108784.1| conserved hypothetical protein [Bacillus cereus NVH0597-99]
 gi|196027739|gb|EDX66353.1| conserved hypothetical protein [Bacillus cereus NVH0597-99]
          Length = 190

 Score = 45.6 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 8/89 (8%)

Query: 33  NPAPGKVILDATFGAGGYS---RSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSL 87
               G   +DAT G G  +            V   D    A+      +++ +  E+  L
Sbjct: 17  AVKEGDYAVDATLGNGYDTCFLAEIVGDNGKVFGFDIQKEAIESSTIRLKEKELFERTVL 76

Query: 88  FQATFSQLQDYVPDK---GVDGVVFDLGV 113
              +   L   +P+     V G +F+LG 
Sbjct: 77  VHDSHDTLLSVLPEDAKGKVTGAIFNLGY 105


>gi|311278256|ref|YP_003940487.1| RNA methyltransferase, TrmA family [Enterobacter cloacae SCF1]
 gi|308747451|gb|ADO47203.1| RNA methyltransferase, TrmA family [Enterobacter cloacae SCF1]
          Length = 433

 Score = 45.6 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 43/131 (32%), Gaps = 9/131 (6%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82
           ++   I  L+  P   +LD   G G ++    +  ++V+ ++  P  V   Q+       
Sbjct: 275 MVATAIDWLDIQPDDRVLDLFCGMGNFTLPLARRAASVVGVEGVPALVEKAQQNAARNGL 334

Query: 83  EQFSLFQATFSQ--LQDYVPDKGVDGVVFDL------GVSSMQIDCGDRGFSFQKSGPLD 134
              + F     +   +      G D ++ D       GV    +    R   +    P  
Sbjct: 335 HNVTFFHENLEEDVTRQAWAKNGFDKILLDPARAGASGVMQHVVKLAPRRVVYVSCNPAT 394

Query: 135 MRMSCSGISAS 145
           +      + A+
Sbjct: 395 LARDSEALLAA 405


>gi|297852270|ref|XP_002894016.1| WW domain-containing protein [Arabidopsis lyrata subsp. lyrata]
 gi|297339858|gb|EFH70275.1| WW domain-containing protein [Arabidopsis lyrata subsp. lyrata]
          Length = 550

 Score = 45.2 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 2/69 (2%)

Query: 38  KVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQL 95
            +++D   G GG +  F      VIA+D DP  +   Q     Y   ++    +  F  L
Sbjct: 389 GIVIDCFTGVGGNAIQFASRRHYVIAIDLDPKKIDLAQHNAAIYGVADKIDFVKGDFFDL 448

Query: 96  QDYVPDKGV 104
              +    V
Sbjct: 449 AHDLKAGTV 457


>gi|239905436|ref|YP_002952175.1| hypothetical protein DMR_07980 [Desulfovibrio magneticus RS-1]
 gi|239795300|dbj|BAH74289.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 209

 Score = 45.2 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 10/90 (11%)

Query: 33  NPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK--EQFS 86
              PG + +DAT G  G+  +           V   D    A++  +  +      E+  
Sbjct: 19  AVRPGDLAVDATVGN-GHDTALLARLVGPSGLVHGFDVQAEAIASAERLLAAAGLAERVR 77

Query: 87  LFQATFSQLQDYVPDKG---VDGVVFDLGV 113
           L      +L + +P+        VVF+LG 
Sbjct: 78  LHVLGHERLAEVLPEADHGRATAVVFNLGY 107


>gi|222099120|ref|YP_002533688.1| hypothetical protein CTN_0146 [Thermotoga neapolitana DSM 4359]
 gi|221571510|gb|ACM22322.1| Putative uncharacterized protein [Thermotoga neapolitana DSM 4359]
          Length = 238

 Score = 45.2 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 52/149 (34%), Gaps = 31/149 (20%)

Query: 29  IALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDR----------DPFAVSCG 74
           I  L P   +V+LD TFG G  S +           VI L+                   
Sbjct: 69  IETLQPEGNEVVLDTTFGLG--SEAILMAAFLPEGKVIGLEGSIHIYTVVKHGMENFETD 126

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
            + +++  ++  L+ A F +     PD   D V  D        +       ++ S    
Sbjct: 127 IKWLKEALKRIELYHADFKEYIRKQPDNSFDVVYCD-----PMFENPV----YESSA--- 174

Query: 135 MRMSCSGISA-SDVVNQANVKDLTRILGI 162
             M+     A  D VN+ +VK++ RI   
Sbjct: 175 --MNPLRPFAVYDTVNEDDVKEMLRIARK 201


>gi|304440266|ref|ZP_07400156.1| rRNA methyltransferase [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371315|gb|EFM24931.1| rRNA methyltransferase [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 181

 Score = 45.2 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 3/87 (3%)

Query: 29  IALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQETMRDY-KEQFS 86
           + LL        +DAT G G  + S  K   ++V + D    A+    E ++ + +++++
Sbjct: 11  LNLLKENNFSYGVDATLGNGNDTYSILKYTDAHVTSFDIQEMALESSLEKLKTFSRDRYN 70

Query: 87  LFQATFSQLQDYVPDKGVDGVVFDLGV 113
           L   + S +  Y+ D   D +VF+ G 
Sbjct: 71  LILDSHSNMDRYLKD-SPDLIVFNTGY 96


>gi|304384539|ref|ZP_07366885.1| rRNA methylase [Pediococcus acidilactici DSM 20284]
 gi|304328733|gb|EFL95953.1| rRNA methylase [Pediococcus acidilactici DSM 20284]
          Length = 187

 Score = 45.2 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 14/97 (14%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFC----KMGSNVIALDRDPFAVSCGQETMR 79
           LL +V+      PG  ++DAT G  G+   F     +    V + D    A+S  +  + 
Sbjct: 12  LLAEVV-----QPGDHVVDATMGN-GHDTLFLANLVQSQGQVFSFDIQAAALSATEARLE 65

Query: 80  DYKE---QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
                     L Q +  QL  YV D  + G VF+LG 
Sbjct: 66  KQLPDHQHVQLIQDSHDQLTQYV-DTPISGAVFNLGY 101


>gi|289550483|ref|YP_003471387.1| SAM-dependent methyltransferase, MraW methylase family
           [Staphylococcus lugdunensis HKU09-01]
 gi|315657973|ref|ZP_07910847.1| rRNA methyltransferase [Staphylococcus lugdunensis M23590]
 gi|289180015|gb|ADC87260.1| SAM-dependent methyltransferase, MraW methylase family
           [Staphylococcus lugdunensis HKU09-01]
 gi|315497009|gb|EFU85330.1| rRNA methyltransferase [Staphylococcus lugdunensis M23590]
          Length = 187

 Score = 45.2 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 33/85 (38%), Gaps = 6/85 (7%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91
                +++DAT G G  +    +     +V   D    A+    + ++ +K   SL   +
Sbjct: 18  IQSDSIVIDATCGNGFDTLFLAQHVPKGHVYGFDIQQQAIDNTAKKIKSFK-NVSLIHDS 76

Query: 92  FSQLQDYV---PDKGVDGVVFDLGV 113
              + D++       +   +F+LG 
Sbjct: 77  HEYISDHLISAHKNKITAAIFNLGY 101


>gi|164688312|ref|ZP_02212340.1| hypothetical protein CLOBAR_01957 [Clostridium bartlettii DSM
           16795]
 gi|164602725|gb|EDQ96190.1| hypothetical protein CLOBAR_01957 [Clostridium bartlettii DSM
           16795]
          Length = 190

 Score = 45.2 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 5/84 (5%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETM-RDYKEQFSLFQ 89
              G V++DAT G G  +    K       V A D    A+    + + ++      L  
Sbjct: 22  IQEGDVVVDATMGNGYDTVYLAKKVGENGKVYAFDVQEEALKSTTKKVNKEELNNVELIL 81

Query: 90  ATFSQLQDYVPDKGVDGVVFDLGV 113
                +  YV ++ V  +VF+LG 
Sbjct: 82  DGHQNMDKYVKEE-VSCIVFNLGY 104


>gi|54310619|ref|YP_131639.1| putative Sun protein [Photobacterium profundum SS9]
 gi|46915062|emb|CAG21837.1| Putative Sun protein [Photobacterium profundum SS9]
          Length = 431

 Score = 45.2 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85
            +  L P  G++ILD     GG +    +      V+A+D D   ++   E +   K   
Sbjct: 235 AVDFLQPQAGELILDCCAAPGGKTAHIMERQPTAKVVAIDCDERRLTRVYENLARLKLDA 294

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
           ++  A      D+   +  D ++ D   S
Sbjct: 295 TVLCADARYPADWWHGEKFDRILLDAPCS 323


>gi|90413777|ref|ZP_01221765.1| Putative Sun protein [Photobacterium profundum 3TCK]
 gi|90325246|gb|EAS41743.1| Putative Sun protein [Photobacterium profundum 3TCK]
          Length = 431

 Score = 45.2 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 34/89 (38%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85
            +  L P   ++ILD     GG +    +      V+A+D D   ++   E +   K   
Sbjct: 235 AVDFLQPQADELILDCCAAPGGKTAHIMERQPTAKVVAIDCDERRLTRVHENLARLKLDA 294

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
           ++  A      D+   +  D ++ D   S
Sbjct: 295 TVLCADARYPADWWHGEKFDRILLDAPCS 323


>gi|195978727|ref|YP_002123971.1| SAM-dependent methyltransferase [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|195975432|gb|ACG62958.1| SAM-dependent methyltransferase [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 185

 Score = 45.2 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 7/90 (7%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-E 83
           L++V+   + A     +DAT G G  +     +   V A D    A++  QE +      
Sbjct: 13  LKEVLDKQSIA-----VDATMGNGYDTAFLASLSQRVYAFDVQQQALTKTQERLEQQGLT 67

Query: 84  QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
              L  A   Q+  YV +  +   +F+LG 
Sbjct: 68  NAELILAGHEQVDQYVKEP-IRAAIFNLGY 96


>gi|157148321|ref|YP_001455640.1| 23S rRNA 5-methyluridine methyltransferase [Citrobacter koseri ATCC
           BAA-895]
 gi|226725378|sp|A8ANZ1|RUMA_CITK8 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|157085526|gb|ABV15204.1| hypothetical protein CKO_04138 [Citrobacter koseri ATCC BAA-895]
          Length = 432

 Score = 45.2 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 36/90 (40%), Gaps = 3/90 (3%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82
           ++ + +  L+  P   +LD   G G ++       ++V+ ++  P  V  G+E  R    
Sbjct: 274 MVARALEWLDIQPDDRVLDLFCGMGNFTLPLATRAASVVGVEGVPALVEKGRENARRNGL 333

Query: 83  EQFSLFQATFSQ--LQDYVPDKGVDGVVFD 110
           +  + F     +   +      G D ++ D
Sbjct: 334 QNVTFFHENLEEDVTKQQWAKNGFDKILLD 363


>gi|157373174|ref|YP_001471774.1| sun protein [Shewanella sediminis HAW-EB3]
 gi|157315548|gb|ABV34646.1| sun protein [Shewanella sediminis HAW-EB3]
          Length = 426

 Score = 45.2 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 2/86 (2%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQFSLF 88
           LL P  G+++LDA    GG +    +   N  ++A+D D   +   Q+ +        L 
Sbjct: 235 LLAPIDGELVLDACAAPGGKTCHLLEQAPNIELVAVDFDANRLERVQQNLDRLSLNAKLI 294

Query: 89  QATFSQLQDYVPDKGVDGVVFDLGVS 114
               + +  +      D ++ D   S
Sbjct: 295 HGDAADIDSWWQGDKFDRILLDAPCS 320


>gi|331092166|ref|ZP_08340996.1| hypothetical protein HMPREF9477_01639 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330401938|gb|EGG81512.1| hypothetical protein HMPREF9477_01639 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 186

 Score = 45.2 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 41/105 (39%), Gaps = 19/105 (18%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFA 70
           HH I +HV               G+  +DAT G G  +    ++      V A D    A
Sbjct: 11  HHFIKNHV-------------KEGETCVDATAGNGNDTLLLAELVGEKGKVYAFDIQEQA 57

Query: 71  VSCGQETMRD--YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
           +   +E + +     +  L   +  ++ + V ++ V  +VF+ G 
Sbjct: 58  LRRTKERLEEKKLDSRAELILQSHEEIGEIVKEE-VSCIVFNFGY 101


>gi|148826444|ref|YP_001291197.1| hypothetical protein CGSHiEE_07455 [Haemophilus influenzae PittEE]
 gi|148716604|gb|ABQ98814.1| hypothetical protein CGSHiEE_07455 [Haemophilus influenzae PittEE]
          Length = 254

 Score = 45.2 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 66/174 (37%), Gaps = 29/174 (16%)

Query: 22  PVLLEKVIA---LLNPAP---GKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCG 74
           P+ L ++I    +L+  P   GK +LD   G GG+ + + + G + VI  D     +   
Sbjct: 24  PISLNEIIEKPTMLSLLPNLKGKKLLDLGCGTGGHLQLYLERGAAKVIGTDLSEKMLEQA 83

Query: 75  QETMR---DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           ++ ++    +  +FSL+     +L + +P+   D +      SS         F+F    
Sbjct: 84  EKDLQKCGQFSGRFSLYHLPIEKLAE-LPESHFDVI-----TSS---------FAFHYIE 128

Query: 132 PLDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
                +S     +S++  +  +    +T        E+         V  R + 
Sbjct: 129 NFPALLSTIHDKLSSNGTLIFSQEHPITTCHKE--GERWEKNDKKQQVAYRLNH 180


>gi|283781585|ref|YP_003372340.1| methyltransferase type 11 [Pirellula staleyi DSM 6068]
 gi|283440038|gb|ADB18480.1| Methyltransferase type 11 [Pirellula staleyi DSM 6068]
          Length = 772

 Score = 45.2 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 35/101 (34%), Gaps = 10/101 (9%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILD--ATFGAGGYSRSFCKMGSNVIALDRD 67
           S +  H +  H        +A     PG  +LD     G G +  +       VI +D  
Sbjct: 221 SRSDAHVVRYH--------LAAQYIRPGDTVLDAACGLGYGSHLLARNTKAERVIGIDGS 272

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVV 108
           PFA+   Q    D +++         +    + D  V  VV
Sbjct: 273 PFAIDYAQANFTDERQRTEFRVGFLPECLAPIADHSVHAVV 313


>gi|90581174|ref|ZP_01236973.1| Putative Sun protein [Vibrio angustum S14]
 gi|90437695|gb|EAS62887.1| Putative Sun protein [Vibrio angustum S14]
          Length = 426

 Score = 45.2 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85
            +  L P  G++ILD     GG +    +      V+A+D D   +    E +       
Sbjct: 235 AVDYLQPKAGELILDCCAAPGGKTAHIMEHVPSTKVVAIDCDENRLKRVHENLARLNLDA 294

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
           ++  A     + +      D ++ D   S
Sbjct: 295 TVLCADARYPEQWWQGDKFDRILLDAPCS 323


>gi|315441657|ref|YP_004074534.1| methylase involved in ubiquinone/menaquinone biosynthesis
           [Mycobacterium sp. Spyr1]
 gi|315265312|gb|ADU02053.1| methylase involved in ubiquinone/menaquinone biosynthesis
           [Mycobacterium sp. Spyr1]
          Length = 208

 Score = 45.2 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 9/82 (10%)

Query: 46  GAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYV--PD 101
           G G  S+   +      + ALD DP  +   ++ +     + +L + + + L+  +   D
Sbjct: 47  GYG--SQLVLQRFGADRIDALDLDPTMIDRARKRLAPCGNRVTLVRGSATDLRAALDADD 104

Query: 102 KGVDGVVFDLGVSSM--QIDCG 121
              D V FD G+     Q    
Sbjct: 105 DSYDAV-FDFGIIHHIPQWRTA 125


>gi|327279228|ref|XP_003224359.1| PREDICTED: trimethylguanosine synthase-like [Anolis carolinensis]
          Length = 943

 Score = 45.2 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96
           +I+DA  G GG S  F   G  VIA+D DP  +         Y   +Q       F +L 
Sbjct: 785 IIVDAFCGVGGNSIQFALAGKRVIAIDIDPVKIRLAHNNAEVYGVADQIEFICGDFMKLA 844

Query: 97  DYVP 100
             + 
Sbjct: 845 SSLK 848


>gi|125544200|gb|EAY90339.1| hypothetical protein OsI_11916 [Oryza sativa Indica Group]
          Length = 690

 Score = 45.2 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 2/69 (2%)

Query: 38  KVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQL 95
            +++D   G GG +  F     +VIA+D DP  + C Q     Y   +     +  F  +
Sbjct: 513 GIVIDCFTGVGGNAIHFANKCRHVIAIDIDPQKIDCAQHNATVYGVHDHIDFVRGDFIHV 572

Query: 96  QDYVPDKGV 104
              +  + V
Sbjct: 573 APRLKGETV 581


>gi|30017517|gb|AAP12939.1| putative PRIP-interacting protein, 5'-partial [Oryza sativa
           Japonica Group]
          Length = 282

 Score = 45.2 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 2/69 (2%)

Query: 38  KVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQL 95
            +++D   G GG +  F     +VIA+D DP  + C Q     Y   +     +  F  +
Sbjct: 105 GIVIDCFTGVGGNAIHFANKCRHVIAIDIDPQKIDCAQHNATVYGVHDHIDFVRGDFIHV 164

Query: 96  QDYVPDKGV 104
              +  + V
Sbjct: 165 APRLKGETV 173


>gi|115453397|ref|NP_001050299.1| Os03g0396900 [Oryza sativa Japonica Group]
 gi|14029021|gb|AAK52562.1|AC079853_15 Unknown protein [Oryza sativa Japonica Group]
 gi|108708634|gb|ABF96429.1| WW domain-containing protein, putative, expressed [Oryza sativa
           Japonica Group]
 gi|113548770|dbj|BAF12213.1| Os03g0396900 [Oryza sativa Japonica Group]
 gi|215737194|dbj|BAG96123.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222625074|gb|EEE59206.1| hypothetical protein OsJ_11156 [Oryza sativa Japonica Group]
          Length = 690

 Score = 45.2 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 2/69 (2%)

Query: 38  KVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQL 95
            +++D   G GG +  F     +VIA+D DP  + C Q     Y   +     +  F  +
Sbjct: 513 GIVIDCFTGVGGNAIHFANKCRHVIAIDIDPQKIDCAQHNATVYGVHDHIDFVRGDFIHV 572

Query: 96  QDYVPDKGV 104
              +  + V
Sbjct: 573 APRLKGETV 581


>gi|16272849|ref|NP_439072.1| hypothetical protein HI0912 [Haemophilus influenzae Rd KW20]
 gi|145638267|ref|ZP_01793877.1| hypothetical protein CGSHiII_05834 [Haemophilus influenzae PittII]
 gi|260580001|ref|ZP_05847831.1| SAM-dependent methyltransferase [Haemophilus influenzae RdAW]
 gi|319897601|ref|YP_004135798.1| sam dependent methyltransferase [Haemophilus influenzae F3031]
 gi|1175329|sp|P44074|Y912_HAEIN RecName: Full=Uncharacterized protein HI_0912
 gi|1573933|gb|AAC22579.1| predicted coding region HI0912 [Haemophilus influenzae Rd KW20]
 gi|145272596|gb|EDK12503.1| hypothetical protein CGSHiII_05834 [Haemophilus influenzae PittII]
 gi|260093285|gb|EEW77218.1| SAM-dependent methyltransferase [Haemophilus influenzae RdAW]
 gi|309751421|gb|ADO81405.1| Conserved hypothetical protein [Haemophilus influenzae R2866]
 gi|309973592|gb|ADO96793.1| Conserved hypothetical protein [Haemophilus influenzae R2846]
 gi|317433107|emb|CBY81481.1| conserved SAM dependent methyltransferase [Haemophilus influenzae
           F3031]
          Length = 254

 Score = 45.2 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 66/174 (37%), Gaps = 29/174 (16%)

Query: 22  PVLLEKVIA---LLNPAP---GKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCG 74
           P+ L ++I    +L+  P   GK +LD   G GG+ + + + G + VI  D     +   
Sbjct: 24  PISLNEIIEKPTMLSLLPNLKGKKLLDLGCGTGGHLQLYLERGAAKVIGTDLSEKMLEQA 83

Query: 75  QETMR---DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           ++ ++    +  +FSL+     +L + +P+   D +      SS         F+F    
Sbjct: 84  EKDLQKCGQFSGRFSLYHLPIEKLAE-LPESHFDVI-----TSS---------FAFHYIE 128

Query: 132 PLDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
                +S     +S++  +  +    +T        E+         V  R + 
Sbjct: 129 NFPTLLSTIHDKLSSNGTLIFSQEHPITTCHKE--GERWEKNDKKQQVAYRLNH 180


>gi|311031210|ref|ZP_07709300.1| putative rRNA methylase [Bacillus sp. m3-13]
          Length = 190

 Score = 45.2 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 40/91 (43%), Gaps = 10/91 (10%)

Query: 32  LNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK--EQF 85
           L    G + +D T G  G+   F         +V   D    A+S  +  + ++    + 
Sbjct: 16  LALTEGDIAVDCTVGN-GHDTLFLSELVGENGHVFGFDIQAEALSNTKTLLAEHGVESRV 74

Query: 86  SLFQATFSQLQDYVPDKG---VDGVVFDLGV 113
           +LF+ + +++ + +P +    + G +F+LG 
Sbjct: 75  TLFEDSHAKVLERIPSEKHHLIRGAIFNLGY 105


>gi|145636957|ref|ZP_01792621.1| hypothetical protein CGSHiHH_04625 [Haemophilus influenzae PittHH]
 gi|145269815|gb|EDK09754.1| hypothetical protein CGSHiHH_04625 [Haemophilus influenzae PittHH]
          Length = 254

 Score = 45.2 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 66/174 (37%), Gaps = 29/174 (16%)

Query: 22  PVLLEKVIA---LLNPAP---GKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCG 74
           P+ L ++I    +L+  P   GK +LD   G GG+ + + + G + VI  D     +   
Sbjct: 24  PISLNEIIEKPTMLSLLPNLKGKKLLDLGCGTGGHLQLYLERGAAKVIGTDLSEKMLEQA 83

Query: 75  QETMR---DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           ++ ++    +  +FSL+     +L + +P+   D +      SS         F+F    
Sbjct: 84  EKDLQKCGQFSGRFSLYHLPIEKLAE-LPESHFDVI-----TSS---------FAFHYIE 128

Query: 132 PLDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
                +S     +S++  +  +    +T        E+         V  R + 
Sbjct: 129 NFPTLLSTIHDKLSSNGTLIFSQEHPITTCHKE--GERWEKNDKKQQVAYRLNH 180


>gi|68249498|ref|YP_248610.1| hypothetical protein NTHI1079 [Haemophilus influenzae 86-028NP]
 gi|68057697|gb|AAX87950.1| conserved hypothetical SAM-dependent methyltransferase [Haemophilus
           influenzae 86-028NP]
          Length = 254

 Score = 45.2 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 66/174 (37%), Gaps = 29/174 (16%)

Query: 22  PVLLEKVIA---LLNPAP---GKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCG 74
           P+ L ++I    +L+  P   GK +LD   G GG+ + + + G + VI  D     +   
Sbjct: 24  PISLNEIIEKPTMLSLLPNLKGKKLLDLGCGTGGHLQLYLERGAAKVIGTDLSEKMLEQA 83

Query: 75  QETMR---DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           ++ ++    +  +FSL+     +L + +P+   D +      SS         F+F    
Sbjct: 84  EKDLQKCGQFSGRFSLYHLPIEKLAE-LPESHFDVI-----TSS---------FAFHYIE 128

Query: 132 PLDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
                +S     +S++  +  +    +T        E+         V  R + 
Sbjct: 129 NFPTLLSTIHDKLSSNGTLIFSQEHPITTCHKE--GERWEKNDKKQQVAYRLNH 180


>gi|224029597|gb|ACN33874.1| unknown [Zea mays]
          Length = 589

 Score = 45.2 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 2/65 (3%)

Query: 38  KVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQL 95
            V++D   G GG +  F K   +VIA+D DP  + C       Y   +        F  +
Sbjct: 430 GVMIDCFTGVGGNAIQFAKKCKHVIAVDIDPQKIDCAHHNASIYGVNDHIDFIVGDFIHI 489

Query: 96  QDYVP 100
             ++ 
Sbjct: 490 APHLK 494


>gi|303242307|ref|ZP_07328793.1| putative rRNA methylase [Acetivibrio cellulolyticus CD2]
 gi|302590146|gb|EFL59908.1| putative rRNA methylase [Acetivibrio cellulolyticus CD2]
          Length = 189

 Score = 45.2 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 6/85 (7%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMR--DYKEQFSLF 88
              G  ++DAT G G  +    K+     +V + D    A+    E +   D +++  L 
Sbjct: 19  VEEGDTVIDATAGNGSDTVFLAKLVGESGHVYSFDVQQIALDRTAEKLDSLDLRDRVDLI 78

Query: 89  QATFSQLQDYVPDKGVDGVVFDLGV 113
                 L +YV    V  V+F+LG 
Sbjct: 79  NDGHENLDNYVKS-KVKAVMFNLGY 102


>gi|326331617|ref|ZP_08197905.1| methyltransferase type 11 [Nocardioidaceae bacterium Broad-1]
 gi|325950416|gb|EGD42468.1| methyltransferase type 11 [Nocardioidaceae bacterium Broad-1]
          Length = 255

 Score = 45.2 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 26/56 (46%)

Query: 30 ALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQF 85
            L    G+ +LD   G G ++    + G++VIA D+D   ++   E     +++ 
Sbjct: 7  DRLGLKAGERVLDMGAGGGRHAFEMYRRGADVIAFDQDAEELAKVSEWFFAMRDEV 62


>gi|86147131|ref|ZP_01065447.1| Sun protein [Vibrio sp. MED222]
 gi|218711000|ref|YP_002418621.1| ribosomal RNA small subunit methyltransferase B [Vibrio splendidus
           LGP32]
 gi|85835015|gb|EAQ53157.1| Sun protein [Vibrio sp. MED222]
 gi|218324019|emb|CAV20381.1| Ribosomal RNA small subunit methyltransferase B [Vibrio splendidus
           LGP32]
          Length = 426

 Score = 45.2 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 34/89 (38%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQETMRDYKEQF 85
            +  L P  G++ILD     GG +    +    + V+A+D D   +    + +   + + 
Sbjct: 235 SVDFLTPKDGELILDCCAAPGGKTAHILEHTQDTEVVAIDSDIKRLDRVYDNLERLQLRA 294

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            +        +++      D ++ D   S
Sbjct: 295 DVICGDARYPEEWWTGSQFDRILLDAPCS 323


>gi|84393439|ref|ZP_00992196.1| Sun protein [Vibrio splendidus 12B01]
 gi|84375955|gb|EAP92845.1| Sun protein [Vibrio splendidus 12B01]
          Length = 426

 Score = 45.2 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 34/89 (38%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQETMRDYKEQF 85
            +  L P  G++ILD     GG +    +    + V+A+D D   +    + +   + + 
Sbjct: 235 SVDFLTPKDGELILDCCAAPGGKTAHILEHTQDTEVVAIDSDIKRLDRVYDNLERLQLRA 294

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            +        +++      D ++ D   S
Sbjct: 295 DVICGDARYPEEWWTGSQFDRILLDAPCS 323


>gi|301169630|emb|CBW29231.1| conserved hypothetical SAM-dependent methyltransferase [Haemophilus
           influenzae 10810]
          Length = 254

 Score = 45.2 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 66/174 (37%), Gaps = 29/174 (16%)

Query: 22  PVLLEKVIA---LLNPAP---GKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCG 74
           P+ L ++I    +L+  P   GK +LD   G GG+ + + + G + VI  D     +   
Sbjct: 24  PISLNEIIEKPTMLSLLPNLKGKKLLDLGCGTGGHLQLYLERGAAKVIGTDLSEKMLEQA 83

Query: 75  QETMR---DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           ++ ++    +  +FSL+     +L + +P+   D +      SS         F+F    
Sbjct: 84  EKDLQKCGQFSGRFSLYHLPIEKLAE-LPESHFDVI-----TSS---------FAFHYIE 128

Query: 132 PLDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
                +S     +S++  +  +    +T        E+         V  R + 
Sbjct: 129 NFPTLLSTIHDKLSSNGALIFSQEHPITTCHKE--GERWEKNDKKQQVAYRLNH 180


>gi|145632289|ref|ZP_01788024.1| hypothetical protein CGSHi3655_07539 [Haemophilus influenzae 3655]
 gi|145634079|ref|ZP_01789790.1| preprotein translocase subunit SecA [Haemophilus influenzae PittAA]
 gi|229844033|ref|ZP_04464174.1| hypothetical protein CGSHi6P18H1_06336 [Haemophilus influenzae
           6P18H1]
 gi|144987196|gb|EDJ93726.1| hypothetical protein CGSHi3655_07539 [Haemophilus influenzae 3655]
 gi|145268523|gb|EDK08516.1| preprotein translocase subunit SecA [Haemophilus influenzae PittAA]
 gi|229813027|gb|EEP48715.1| hypothetical protein CGSHi6P18H1_06336 [Haemophilus influenzae
           6P18H1]
          Length = 254

 Score = 45.2 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 66/174 (37%), Gaps = 29/174 (16%)

Query: 22  PVLLEKVIA---LLNPAP---GKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCG 74
           P+ L ++I    +L+  P   GK +LD   G GG+ + + + G + VI  D     +   
Sbjct: 24  PISLNEIIEKPTMLSLLPNLKGKKLLDLGCGTGGHLQLYLERGAAKVIGTDLSEKMLEQA 83

Query: 75  QETMR---DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           ++ ++    +  +FSL+     +L + +P+   D +      SS         F+F    
Sbjct: 84  EKDLQKCGQFSGRFSLYHLPIEKLAE-LPESHFDVI-----TSS---------FAFHYIE 128

Query: 132 PLDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
                +S     +S++  +  +    +T        E+         V  R + 
Sbjct: 129 NFPALLSTIHDKLSSNGTLIFSQEHPITTCHKE--GERWEKNDKKQQVAYRLNH 180


>gi|163942480|ref|YP_001647364.1| putative rRNA methylase [Bacillus weihenstephanensis KBAB4]
 gi|163864677|gb|ABY45736.1| putative rRNA methylase [Bacillus weihenstephanensis KBAB4]
          Length = 190

 Score = 45.2 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 30/90 (33%), Gaps = 10/90 (11%)

Query: 33  NPAPGKVILDATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFS 86
               G   +DAT G  G+              V   D    A+      ++  +  E+  
Sbjct: 17  AVKEGDYAVDATLGN-GHDTCFLAEIVGDNGKVFGFDIQKEAIESSTIRLKKKELFERTV 75

Query: 87  LFQATFSQLQDYVPDK---GVDGVVFDLGV 113
           L   +   L   +P+     V G +F+LG 
Sbjct: 76  LVHDSHDTLLSVLPEDAKGKVTGAIFNLGY 105


>gi|324505112|gb|ADY42202.1| Trimethylguanosine synthase [Ascaris suum]
          Length = 630

 Score = 44.8 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 2/75 (2%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82
           + E +   +    G +I+DA  G GG +  F   G+ VIA+D DP  + C     + Y  
Sbjct: 434 MAEHIADRMVRREGALIIDAFTGVGGNAIQFALKGAFVIAIDLDPVRLRCAARNAQVYGV 493

Query: 83  -EQFSLFQATFSQLQ 96
            ++ +     F    
Sbjct: 494 ADRINFICTDFFHFA 508


>gi|312382192|gb|EFR27733.1| hypothetical protein AND_05214 [Anopheles darlingi]
          Length = 1097

 Score = 44.8 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 42/118 (35%), Gaps = 12/118 (10%)

Query: 39   VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96
            +I+DA  G GG +  F      VIA+D DP  +   +     Y   ++       F QL 
Sbjct: 937  LIVDAFCGCGGNTIQFAFTCQKVIAIDIDPRKIEMAKHNAAVYGVADRIEFITGDFVQLA 996

Query: 97   DYVPDK-GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANV 153
                 +   D V       S          S+ K    D+  S   + ASD++  A  
Sbjct: 997  AAGGGRLKADTVFL-----SPPWGGP----SYMKDEVYDLEQSLLPVPASDLMRAAQQ 1045


>gi|73999118|ref|XP_857350.1| PREDICTED: similar to PRIP-interacting protein PIPMT isoform 3
           [Canis familiaris]
          Length = 267

 Score = 44.8 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 60/172 (34%), Gaps = 23/172 (13%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96
           +++DA  G GG +  F   G  VIA+D DP  +   +     Y   ++       F  L 
Sbjct: 107 IVVDAFCGVGGNTIQFALTGKRVIAIDIDPVKIDLARNNAEVYGIADKIEFICGDFLLLA 166

Query: 97  DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR--MSCSGISASDVVNQANVK 154
            ++          D+   S      D    +  +   D+R  MS  G     +  +    
Sbjct: 167 SHLK--------ADVVFLSPPWGGPD----YATAETFDIRTMMSPDGFEIFRLSQKIT-N 213

Query: 155 DLTRILGILGEEKQASRIAH-----AIVKRRQSAPFQT-TQDLSSLIQKTVY 200
           ++   L    +  Q + +A       I +   +   +T T     LI+++  
Sbjct: 214 NIVYFLPRNADIDQVASLAGPGGQVEIEQNFLNNKLKTITAYFGDLIRRSAP 265


>gi|73999114|ref|XP_535077.2| PREDICTED: similar to PRIP-interacting protein PIPMT isoform 1
           [Canis familiaris]
          Length = 852

 Score = 44.8 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 60/172 (34%), Gaps = 23/172 (13%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96
           +++DA  G GG +  F   G  VIA+D DP  +   +     Y   ++       F  L 
Sbjct: 692 IVVDAFCGVGGNTIQFALTGKRVIAIDIDPVKIDLARNNAEVYGIADKIEFICGDFLLLA 751

Query: 97  DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR--MSCSGISASDVVNQANVK 154
            ++          D+   S      D    +  +   D+R  MS  G     +  +    
Sbjct: 752 SHLK--------ADVVFLSPPWGGPD----YATAETFDIRTMMSPDGFEIFRLSQKIT-N 798

Query: 155 DLTRILGILGEEKQASRIAH-----AIVKRRQSAPFQT-TQDLSSLIQKTVY 200
           ++   L    +  Q + +A       I +   +   +T T     LI+++  
Sbjct: 799 NIVYFLPRNADIDQVASLAGPGGQVEIEQNFLNNKLKTITAYFGDLIRRSAP 850


>gi|328773183|gb|EGF83220.1| hypothetical protein BATDEDRAFT_21725 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 304

 Score = 44.8 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 32/87 (36%), Gaps = 5/87 (5%)

Query: 38  KVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQL 95
           KV++D   G GG +  F      VIA+D DP  + C +     Y   ++       F +L
Sbjct: 140 KVMVDGFCGVGGNAIQFAMTCDKVIAIDIDPVRLECARHNAAVYGVQDKIEFICGDFMEL 199

Query: 96  QDYVPDKGVDGVVFDLGVSSMQIDCGD 122
               P    DGV         Q    D
Sbjct: 200 A---PTIKADGVFMSPPWGGPQYIQAD 223


>gi|322411186|gb|EFY02094.1| SAM-dependent methyltransferase [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 184

 Score = 44.8 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 34/90 (37%), Gaps = 7/90 (7%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-E 83
           L +V+         V++DAT G G  +    +    V A D    A+    E +      
Sbjct: 13  LAEVMD-----KSSVVVDATMGNGNDTAFLAQSAKKVYAFDVQEQAIRKTSERLAQLGLS 67

Query: 84  QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
              L  A    + +YV +  V   +F+LG 
Sbjct: 68  NAELILAGHEAVDEYVTEP-VRAAIFNLGY 96


>gi|255538280|ref|XP_002510205.1| conserved hypothetical protein [Ricinus communis]
 gi|223550906|gb|EEF52392.1| conserved hypothetical protein [Ricinus communis]
          Length = 263

 Score = 44.8 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 2/67 (2%)

Query: 40  ILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQD 97
           I+D   G GG +  F +   +VIA+D DP  +         Y   +Q       F  L  
Sbjct: 100 IIDCFTGVGGNAIQFAQRCKHVIAIDVDPKKIDYAYHNASIYGVADQIDFITGDFFNLAP 159

Query: 98  YVPDKGV 104
            +    V
Sbjct: 160 KLKADTV 166


>gi|89074758|ref|ZP_01161216.1| Putative Sun protein [Photobacterium sp. SKA34]
 gi|89049522|gb|EAR55083.1| Putative Sun protein [Photobacterium sp. SKA34]
          Length = 426

 Score = 44.8 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 31/89 (34%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85
            +  L P   ++ILD     GG +    +      V+A+D D   +    E +       
Sbjct: 235 AVDYLQPKADELILDCCAAPGGKTAHIMEHVPSTKVVAIDCDENRLKRVHENLARLNLDA 294

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
           ++  A     + +      D ++ D   S
Sbjct: 295 TVLCADARYPEQWWQGDKFDRILLDAPCS 323


>gi|297180807|gb|ADI17013.1| tRNA and rRNA cytosine-c5-methylases [uncultured Vibrionales
           bacterium HF0010_22E23]
          Length = 426

 Score = 44.8 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQF 85
            +  L P  G++ILD     GG +    +   N  V+A+D D   ++  +E +       
Sbjct: 235 SVNYLQPKAGELILDCCAAPGGKTCHILEHQPNAKVVAIDADANRLTRVEENLGRLNLNA 294

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            +         ++   +  D ++ D   S
Sbjct: 295 DVICGDARSPDEWWNGEDFDRILLDAPCS 323


>gi|73999116|ref|XP_857311.1| PREDICTED: similar to PRIP-interacting protein PIPMT isoform 2
           [Canis familiaris]
          Length = 330

 Score = 44.8 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 60/172 (34%), Gaps = 23/172 (13%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96
           +++DA  G GG +  F   G  VIA+D DP  +   +     Y   ++       F  L 
Sbjct: 170 IVVDAFCGVGGNTIQFALTGKRVIAIDIDPVKIDLARNNAEVYGIADKIEFICGDFLLLA 229

Query: 97  DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR--MSCSGISASDVVNQANVK 154
            ++          D+   S      D    +  +   D+R  MS  G     +  +    
Sbjct: 230 SHLK--------ADVVFLSPPWGGPD----YATAETFDIRTMMSPDGFEIFRLSQKIT-N 276

Query: 155 DLTRILGILGEEKQASRIAH-----AIVKRRQSAPFQT-TQDLSSLIQKTVY 200
           ++   L    +  Q + +A       I +   +   +T T     LI+++  
Sbjct: 277 NIVYFLPRNADIDQVASLAGPGGQVEIEQNFLNNKLKTITAYFGDLIRRSAP 328


>gi|307213126|gb|EFN88648.1| Trimethylguanosine synthase-like protein [Harpegnathos saltator]
          Length = 978

 Score = 44.8 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 2/68 (2%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96
           +I+DA  GAGG +  F    + VIA+D DP  +   +   + Y    +       F +L 
Sbjct: 813 IIIDAFCGAGGNTIQFALTCNKVIAIDIDPIKIELAKHNAKIYGVDNKIEFIVGNFLELA 872

Query: 97  DYVPDKGV 104
             +    V
Sbjct: 873 PKLEADVV 880


>gi|330447314|ref|ZP_08310964.1| ribosomal RNA small subunit methyltransferase B [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328491505|dbj|GAA05461.1| ribosomal RNA small subunit methyltransferase B [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 426

 Score = 44.8 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85
            +  L P  G++ILD     GG +    +      V+A+D D   +    E +       
Sbjct: 235 AVDYLQPQAGELILDCCAAPGGKTAHIMEHVPSTKVVAIDCDENRLKRVHENLARLNLDA 294

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
           ++  A     + +      D ++ D   S
Sbjct: 295 TVLCADARYPEQWWKGDKFDRILLDAPCS 323


>gi|322367983|ref|ZP_08042552.1| Methyltransferase type 11 [Haladaptatus paucihalophilus DX253]
 gi|320551999|gb|EFW93644.1| Methyltransferase type 11 [Haladaptatus paucihalophilus DX253]
          Length = 207

 Score = 44.8 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 29/73 (39%), Gaps = 1/73 (1%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83
           + ++ +++L+      +LD   G G  +    +   NV  LD+    +    E +  Y  
Sbjct: 33  MRDEALSMLDIDEDDTVLDVGCGTGFGTEGLLQHTENVHGLDQSVHQLEKAWEKLGKYDP 92

Query: 84  QFSLFQATFSQLQ 96
             S ++    +L 
Sbjct: 93  -VSFYRGDAERLP 104


>gi|320547357|ref|ZP_08041648.1| rRNA methylase [Streptococcus equinus ATCC 9812]
 gi|320448055|gb|EFW88807.1| rRNA methylase [Streptococcus equinus ATCC 9812]
          Length = 182

 Score = 44.8 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 33/90 (36%), Gaps = 7/90 (7%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-E 83
           L +V+       G V +DAT G G  +    +    V A D    A+   QE +      
Sbjct: 13  LAEVLD-----DGAVAVDATMGNGNDTAFLAQHAKKVYAFDVQEQALKSTQERLEKQAIS 67

Query: 84  QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
              L       L  YV +  +   +F+LG 
Sbjct: 68  NAQLILDGHQNLDKYVSEP-IRAAIFNLGY 96


>gi|167621966|ref|YP_001672260.1| sun protein [Shewanella halifaxensis HAW-EB4]
 gi|167351988|gb|ABZ74601.1| sun protein [Shewanella halifaxensis HAW-EB4]
          Length = 426

 Score = 44.8 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 35/86 (40%), Gaps = 2/86 (2%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQFSLF 88
           LL P   +++LDA    GG S    ++  +  ++A+D D   +   Q+ +     +  L 
Sbjct: 235 LLAPQGDELVLDACAAPGGKSCHLLELAPDIKLVAVDFDAKRLERVQQNLDRLSLKAELV 294

Query: 89  QATFSQLQDYVPDKGVDGVVFDLGVS 114
               + +  +      D ++ D   S
Sbjct: 295 HGDAANIDSWWQGDKFDRILLDAPCS 320


>gi|145641900|ref|ZP_01797474.1| conserved hypothetical SAM-dependent methyltransferase [Haemophilus
           influenzae R3021]
 gi|145273379|gb|EDK13251.1| conserved hypothetical SAM-dependent methyltransferase [Haemophilus
           influenzae 22.4-21]
          Length = 177

 Score = 44.8 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 46/96 (47%), Gaps = 11/96 (11%)

Query: 22  PVLLEKVIA---LLNPAP---GKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCG 74
           P+ L ++I    +L+  P   GK +LD   G GG+ + + + G + VI  D     +   
Sbjct: 24  PISLNEIIEKPTMLSLLPNLKGKKLLDLGCGTGGHLQLYLERGAAKVIGTDLSEKMLEQA 83

Query: 75  QETMR---DYKEQFSLFQATFSQLQDYVPDKGVDGV 107
           ++ ++    +  +FSL+     +L + +P+   D +
Sbjct: 84  EKDLQKCGQFSGRFSLYHLPIEKLAE-LPESHFDVI 118


>gi|73662312|ref|YP_301093.1| hypothetical protein SSP1003 [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72494827|dbj|BAE18148.1| conserved hypothetical protein [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 186

 Score = 44.8 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 6/85 (7%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91
            +   +++DAT G G  +    +     NV A D    A+   Q  + D+    ++ Q +
Sbjct: 18  VSDDSIVIDATCGNGNDTHFLAQQVPNGNVYAFDIQDEAIKQTQLKIHDF-NNVTIVQDS 76

Query: 92  FSQLQDYVPDK---GVDGVVFDLGV 113
            + +Q Y+P+     +D  +F+LG 
Sbjct: 77  HANIQSYIPNYQQGKIDAAIFNLGY 101


>gi|327462947|gb|EGF09268.1| rRNA methylase [Streptococcus sanguinis SK1]
          Length = 183

 Score = 44.8 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 35/92 (38%), Gaps = 6/92 (6%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82
           +    +A +      +++DAT G  G+ +    ++   V A D    AV   ++ + +  
Sbjct: 7   MAHAFLAEVVTKED-IVVDATMGN-GHDTLFLAQLAKQVYAFDIQEQAVEKTRQRLAEAD 64

Query: 83  -EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
            +   L  +    +  Y         +F+LG 
Sbjct: 65  LDNVQLILSGHETMDQYTDHFK--AAIFNLGY 94


>gi|294501591|ref|YP_003565291.1| putative rRNA methylase [Bacillus megaterium QM B1551]
 gi|295706939|ref|YP_003600014.1| putative rRNA methylase [Bacillus megaterium DSM 319]
 gi|294351528|gb|ADE71857.1| putative rRNA methylase [Bacillus megaterium QM B1551]
 gi|294804598|gb|ADF41664.1| putative rRNA methylase [Bacillus megaterium DSM 319]
          Length = 189

 Score = 44.8 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 9/89 (10%)

Query: 33  NPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDY--KEQFS 86
             A G V +DAT G  G+   F         +V   D  P A+   Q+ + ++  + + +
Sbjct: 17  AVAQGDVAIDATAGN-GHDTLFLANLVGDTGHVYGFDIQPQAIQATQQRLTEHHVENRVT 75

Query: 87  LFQATFSQLQDYVPDKG--VDGVVFDLGV 113
           L Q + S +          V G VF+LG 
Sbjct: 76  LIQESHSNINMLPRSIKGRVTGAVFNLGY 104


>gi|57641870|ref|YP_184348.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus kodakarensis KOD1]
 gi|57160194|dbj|BAD86124.1| tRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family [Thermococcus
           kodakarensis KOD1]
          Length = 450

 Score = 44.8 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 33/83 (39%), Gaps = 4/83 (4%)

Query: 32  LNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQFSL 87
           L P PG+ ++D     GG   +     +    + A D D   +   +E ++    E   +
Sbjct: 246 LAPKPGETVVDLAAAPGGKTAHMAELMENRGKIYAFDVDSARIKRMKEVLKRTGVEIAEV 305

Query: 88  FQATFSQLQDYVPDKGVDGVVFD 110
            +A      + + ++  D V+ D
Sbjct: 306 IKADGRNAPELLGEEIADRVLLD 328


>gi|171780242|ref|ZP_02921146.1| hypothetical protein STRINF_02030 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281590|gb|EDT47025.1| hypothetical protein STRINF_02030 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 182

 Score = 44.8 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 33/90 (36%), Gaps = 7/90 (7%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-E 83
           L +V+       G V +DAT G G  +    +    V A D    A+   QE +      
Sbjct: 13  LAEVLD-----DGAVAVDATMGNGNDTAFLAQHAKKVYAFDVQEQALKSTQERLEKQAIS 67

Query: 84  QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
              L       L  YV +  +   +F+LG 
Sbjct: 68  NAQLILDGHQNLDKYVSEP-IRAAIFNLGY 96


>gi|237746404|ref|ZP_04576884.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
 gi|229377755|gb|EEO27846.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
          Length = 283

 Score = 44.8 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 28/50 (56%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77
           V+ LL P  G+ ILD   GAG ++    K G  V+ +D +P AV+  +E 
Sbjct: 59  VLELLAPKAGERILDLGCGAGVWAEEMMKRGCEVVGVDINPQAVAAARER 108


>gi|329117650|ref|ZP_08246367.1| putative rRNA methylase [Streptococcus parauberis NCFD 2020]
 gi|326908055|gb|EGE54969.1| putative rRNA methylase [Streptococcus parauberis NCFD 2020]
          Length = 180

 Score = 44.8 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 8/90 (8%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETM-RDYKE 83
           L++V+         + +DAT G G  +  F  +   VIA D    A+   ++ +   +  
Sbjct: 12  LKEVL-----TQDSLFVDATMGNGNDTLYFAPLVKEVIAFDIQEEALLATRKKLDAIHVN 66

Query: 84  QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
              L       +  Y     +DG +F+LG 
Sbjct: 67  NVQLILDGHQHVDKY--TDKIDGAIFNLGY 94


>gi|312868433|ref|ZP_07728633.1| putative rRNA methylase [Streptococcus parasanguinis F0405]
 gi|311096178|gb|EFQ54422.1| putative rRNA methylase [Streptococcus parasanguinis F0405]
          Length = 185

 Score = 44.4 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 10/91 (10%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSNVIALDRDPFAVSCGQETMRDYK- 82
           LE+VI         V++DAT G  G+  +F  ++   V A D    A+   QE +     
Sbjct: 12  LEEVI----TKED-VVVDATMGN-GHDTAFLAQLAGQVYAFDIQEQALVNTQERLEKLGL 65

Query: 83  EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
           +   L       +  YV        +F+LG 
Sbjct: 66  QHVQLILDGHQHVDQYVETLK--AAIFNLGY 94


>gi|260583635|ref|ZP_05851383.1| SAM-dependent methyltransferase [Granulicatella elegans ATCC
           700633]
 gi|260158261|gb|EEW93329.1| SAM-dependent methyltransferase [Granulicatella elegans ATCC
           700633]
          Length = 186

 Score = 44.4 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 36/94 (38%), Gaps = 11/94 (11%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYS---RSFCKMGSNVIALDRDPFAVSCGQETMRDY 81
           L++        PG  ++DAT G G  +       +    V A D    A+    E +++ 
Sbjct: 13  LQEC-----IKPGDCVIDATMGNGNDTIFLSKLVQSEGKVFAFDIQEAALIRTNEKIQEL 67

Query: 82  K--EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
              E   L   + + L  YV    +   +F+LG 
Sbjct: 68  DTKENIHLICDSHANLSTYVQQP-IQAAIFNLGY 100


>gi|322373579|ref|ZP_08048115.1| putative rRNA methylase [Streptococcus sp. C150]
 gi|321278621|gb|EFX55690.1| putative rRNA methylase [Streptococcus sp. C150]
          Length = 182

 Score = 44.4 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 7/90 (7%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-E 83
           L +V+       G + +DAT G G  +     +   V A D    A+    + + D K +
Sbjct: 13  LAQVLD-----DGSIAVDATMGNGNDTAFLAGLAKKVYAFDVQEQALEKTSQRLSDLKID 67

Query: 84  QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
              L       L  YV +  +   +F+LG 
Sbjct: 68  NAELILDGHENLDRYVTEP-IRAAIFNLGY 96


>gi|319775156|ref|YP_004137644.1| SAM dependent methyltransferase [Haemophilus influenzae F3047]
 gi|329122926|ref|ZP_08251497.1| metallothionein SmtA [Haemophilus aegyptius ATCC 11116]
 gi|317449747|emb|CBY85954.1| conserved SAM dependent methyltransferase [Haemophilus influenzae
           F3047]
 gi|327471857|gb|EGF17297.1| metallothionein SmtA [Haemophilus aegyptius ATCC 11116]
          Length = 254

 Score = 44.4 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 46/96 (47%), Gaps = 11/96 (11%)

Query: 22  PVLLEKVIA---LLNPAP---GKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCG 74
           P+ L ++I    +L+  P   GK +LD   G GG+ + + + G + VI  D     +   
Sbjct: 24  PISLNEIIEKPTMLSLLPNLKGKKLLDLGCGTGGHLQLYLERGAAKVIGTDLSEKMLEQA 83

Query: 75  QETMR---DYKEQFSLFQATFSQLQDYVPDKGVDGV 107
           ++ ++    +  +FSL+     +L + +P+   D +
Sbjct: 84  EKDLQKCGQFSGRFSLYHLPIEKLAE-LPESHFDVI 118


>gi|319637816|ref|ZP_07992582.1| hypothetical protein HMPREF0604_00205 [Neisseria mucosa C102]
 gi|317400971|gb|EFV81626.1| hypothetical protein HMPREF0604_00205 [Neisseria mucosa C102]
          Length = 189

 Score = 44.4 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 13/96 (13%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMR 79
           LL + +       G   LDAT G  G+              V A D    A++  Q  ++
Sbjct: 13  LLRQAL-----KAGGRALDATAGN-GHDTLLLAQLVGETGKVWAFDVQSKALAQTQGRLK 66

Query: 80  D--YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
           +     + +L       L  Y+ +  +D  VF+ G 
Sbjct: 67  ENGVDGRVALIHDGHENLSSYIDEP-LDAAVFNFGW 101


>gi|254564064|ref|YP_003071159.1| hypothetical protein METDI5751 [Methylobacterium extorquens DM4]
 gi|254271342|emb|CAX27354.1| putative protein-L-isoaspartate O-methyltransferase
           [Methylobacterium extorquens DM4]
          Length = 216

 Score = 44.4 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 4/61 (6%)

Query: 22  PVLLEKVIALLNPAPGKVILDATFGAG-GYSRSFCK-MGSNVIALDRDPFAVSCGQETMR 79
           P+LL ++I  L   PG   LD   G G GY  +  + +G+ V+AL+ DP  ++  +E + 
Sbjct: 68  PMLLARLIQALKIRPGTRALD--VGTGYGYGAAMLRQLGAEVVALESDPDLIAAARERLG 125

Query: 80  D 80
           D
Sbjct: 126 D 126


>gi|297616627|ref|YP_003701786.1| rRNA methylase [Syntrophothermus lipocalidus DSM 12680]
 gi|297144464|gb|ADI01221.1| putative rRNA methylase [Syntrophothermus lipocalidus DSM 12680]
          Length = 193

 Score = 44.4 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 43/96 (44%), Gaps = 11/96 (11%)

Query: 23  VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETM- 78
           VL+  V+      PG  ++DAT G G  +    ++      V+A+D  P AV   +  + 
Sbjct: 15  VLIHTVVE-----PGDFVVDATCGNGKDTVFLARLVGEKGKVLAIDVQPLAVERTKSLLQ 69

Query: 79  -RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
                 + +L +   S ++ Y+ +  V   +F+LG 
Sbjct: 70  KEGLGSRVTLVRDDHSLIRHYLREP-VKAAMFNLGY 104


>gi|159480252|ref|XP_001698198.1| hypothetical protein CHLREDRAFT_41764 [Chlamydomonas reinhardtii]
 gi|158273696|gb|EDO99483.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 221

 Score = 44.4 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 37/100 (37%), Gaps = 23/100 (23%)

Query: 30  ALLNPAPGKVILDA--------TFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81
             L+PAPG  ++D         T     +  +  +    VIA D+DP  ++     ++  
Sbjct: 13  HALSPAPGWTVVDCCAAPGNKTT-----HLAAIMRNKGRVIAFDKDPKRLA----RLKAN 63

Query: 82  KEQ-----FSLFQATFSQLQDYVPDKG-VDGVVFDLGVSS 115
            E+            F  +    P+ G V GV+ D   S 
Sbjct: 64  AERTGASCVQARLQDFLSIDPTDPEFGQVRGVLLDPSCSG 103


>gi|300855525|ref|YP_003780509.1| putative rRNA methylase [Clostridium ljungdahlii DSM 13528]
 gi|300435640|gb|ADK15407.1| putative rRNA methylase [Clostridium ljungdahlii DSM 13528]
          Length = 188

 Score = 44.4 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 6/84 (7%)

Query: 35  APGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETM--RDYKEQFSLFQ 89
             G +++DAT G G  +    ++      V + D    A+   +E +   +  E   L  
Sbjct: 21  NKGDIVVDATMGNGNDTELLAELVGSSGKVYSFDIQETALQNTKEKLMKSNVSEWVKLIH 80

Query: 90  ATFSQLQDYVPDKGVDGVVFDLGV 113
                +  YV D  ++ V+F+LG 
Sbjct: 81  DGHENMDKYVKD-KINLVIFNLGY 103


>gi|261334706|emb|CBH17700.1| proliferator-activated receptor-interacting protein (PRIP)
           interacting protein (PIMT), putative,pseudogene
           [Trypanosoma brucei gambiense DAL972]
          Length = 251

 Score = 44.4 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 4/75 (5%)

Query: 35  APGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATF 92
                 LD   G GG +    ++   VIA+D DP A+   ++    Y    + +   A +
Sbjct: 59  KDKGCCLDLFCGCGGDTVQLAQVFEKVIAVDIDPDAIEAAKKNAEVYGVSTRVTFLCADY 118

Query: 93  SQLQDYVPDKGVDGV 107
             L+    +  V+ V
Sbjct: 119 RTLKP--ENFSVNAV 131


>gi|228475902|ref|ZP_04060612.1| SAM-dependent methyltransferase, MraW methylase family
           [Staphylococcus hominis SK119]
 gi|228270057|gb|EEK11527.1| SAM-dependent methyltransferase, MraW methylase family
           [Staphylococcus hominis SK119]
          Length = 186

 Score = 44.4 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 6/85 (7%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91
                +++DAT G G  +    +      V   D    A+   +E +  +K   +L    
Sbjct: 18  IQHDSIVIDATCGNGNDTLFLAEQVPNGKVFGFDIQKEAIEHTKEKIASFKH-VTLIHDG 76

Query: 92  FSQLQDYVPDK---GVDGVVFDLGV 113
              + + +P      VD  +F+LG 
Sbjct: 77  HENILNDIPSDVIGNVDAAIFNLGY 101


>gi|294138832|ref|YP_003554810.1| ribosomal RNA small subunit methyltransferase B [Shewanella
           violacea DSS12]
 gi|293325301|dbj|BAJ00032.1| ribosomal RNA small subunit methyltransferase B [Shewanella
           violacea DSS12]
          Length = 425

 Score = 44.4 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 35/85 (41%), Gaps = 1/85 (1%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSLFQ 89
           LL P  G+++LDA    GG +    ++ +  ++A+D D   +   Q+ +        L  
Sbjct: 235 LLAPKDGELVLDACAAPGGKTCHLLELANIQLVAVDFDEKRLERVQQNLDRLSLDAKLVH 294

Query: 90  ATFSQLQDYVPDKGVDGVVFDLGVS 114
              + +  +      D ++ D   S
Sbjct: 295 GDAADIDSWWQGDKFDRILLDAPCS 319


>gi|323351031|ref|ZP_08086688.1| rRNA methylase [Streptococcus sanguinis VMC66]
 gi|322122755|gb|EFX94464.1| rRNA methylase [Streptococcus sanguinis VMC66]
          Length = 183

 Score = 44.4 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 5/77 (6%)

Query: 39  VILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQLQ 96
            ++DAT G  G+   F    +  V A D    AV   ++ + +   +   L  A    L 
Sbjct: 21  TVVDATMGN-GHDTLFLAQLARKVYAFDIQEQAVEKTRQRLAEAGLDNAQLILAGHETLD 79

Query: 97  DYVPDKGVDGVVFDLGV 113
            Y+        +F+LG 
Sbjct: 80  QYLDHFK--AAIFNLGY 94


>gi|14521455|ref|NP_126931.1| proliferating-cell nucleolar antigen P120, putative [Pyrococcus
           abyssi GE5]
 gi|5458674|emb|CAB50161.1| Sun/NOL1/NOP2 nucleolar protein [Pyrococcus abyssi GE5]
          Length = 449

 Score = 44.4 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 33/87 (37%), Gaps = 12/87 (13%)

Query: 32  LNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ---- 84
           LNP PG+VI+D     GG   +     K    + A D D        + ++++  +    
Sbjct: 255 LNPQPGEVIVDLAAAPGGKTTHLAELMKNKGKIYAFDIDKTR----MKRLKEFVNRMGIK 310

Query: 85  -FSLFQATFSQLQDYVPDKGVDGVVFD 110
                     +  + + ++  D V+ D
Sbjct: 311 IVKPIIKDGRKAPEILGEEIADRVLLD 337


>gi|154503156|ref|ZP_02040216.1| hypothetical protein RUMGNA_00980 [Ruminococcus gnavus ATCC 29149]
 gi|153796150|gb|EDN78570.1| hypothetical protein RUMGNA_00980 [Ruminococcus gnavus ATCC 29149]
          Length = 180

 Score = 44.4 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 6/85 (7%)

Query: 34  PAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMRDYK--EQFSLF 88
              G   +DAT G G  +   C+       V A D    AV   ++ + +    E+  + 
Sbjct: 6   IKEGDCCVDATAGNGNDTEFLCRLTGADGKVYAFDIQKAAVEHTKKRLEEAGLTERAKVI 65

Query: 89  QATFSQLQDYVPDKGVDGVVFDLGV 113
                 +++YV +  V  + F+ G 
Sbjct: 66  LDGHEHMENYVRET-VSAITFNFGY 89


>gi|327474550|gb|EGF19955.1| rRNA methylase [Streptococcus sanguinis SK408]
          Length = 183

 Score = 44.4 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 6/92 (6%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82
           +    +A +       ++DAT G  G+ +    K+   V A D    AV   ++ + +  
Sbjct: 7   MAHAFLAEVVTKED-TVVDATMGN-GHDTLFLAKLAKQVYAFDIQEQAVEKTRQRLAEAG 64

Query: 83  -EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
                L  +    L  Y         +F+LG 
Sbjct: 65  LNNVQLILSGHETLDQYTDHFK--AAIFNLGY 94


>gi|315641876|ref|ZP_07896868.1| rRNA methylase [Enterococcus italicus DSM 15952]
 gi|315482444|gb|EFU72984.1| rRNA methylase [Enterococcus italicus DSM 15952]
          Length = 187

 Score = 44.4 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 12/85 (14%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETM- 78
           L +++        G  ++DAT G  G+  +F         +V A D    A+   ++ + 
Sbjct: 12  LAKEI-----ILSGDCVVDATMGN-GHDTAFLAQLVGPTGHVFAFDVQKPALIATEQRLL 65

Query: 79  -RDYKEQFSLFQATFSQLQDYVPDK 102
             D  ++ +L      Q   Y P +
Sbjct: 66  AADLLDRTTLIHDGHEQFTQYFPKQ 90


>gi|327470441|gb|EGF15897.1| rRNA methylase [Streptococcus sanguinis SK330]
          Length = 183

 Score = 44.4 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 6/92 (6%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82
           +    +A +      +++DAT G  G+ +    K+   V A D    AV   ++ + +  
Sbjct: 7   MAHAFLAEVVTKED-IVVDATMGN-GHDTLFLAKLAKQVYAFDIQEQAVEKTRQRLAEAG 64

Query: 83  -EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
            +   L  A    L  Y         +F+LG 
Sbjct: 65  LDNAQLILAGHETLDQYTDHFK--AAIFNLGY 94


>gi|241758659|ref|ZP_04756773.1| methylase protein [Neisseria flavescens SK114]
 gi|241321170|gb|EER57366.1| methylase protein [Neisseria flavescens SK114]
          Length = 189

 Score = 44.4 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 34/96 (35%), Gaps = 13/96 (13%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMR 79
           LL + +       G   LDAT G  G+              V A D    A+   Q  ++
Sbjct: 13  LLRQAL-----KAGGRALDATAGN-GHDTLLLAQSVGETGRVWAFDVQSKALMQTQGRLK 66

Query: 80  D--YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
           +     + +L       L  Y+ +  +D  VF+ G 
Sbjct: 67  ENGVDGRVALIHGGHENLLSYIDEP-LDAAVFNFGW 101


>gi|159035910|ref|YP_001535163.1| methyltransferase type 11 [Salinispora arenicola CNS-205]
 gi|157914745|gb|ABV96172.1| Methyltransferase type 11 [Salinispora arenicola CNS-205]
          Length = 259

 Score = 44.4 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 4/86 (4%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSL 87
            + LL    G+ +LD   G G Y+      G+ VI LD+ P  V   ++ +   + +   
Sbjct: 59  CLRLLGEVAGRTVLDVACGPGLYAEELVGRGARVIGLDQSPRMVQLCRQRVPSGEFRVH- 117

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGV 113
                +    ++PD  VD V+F LG+
Sbjct: 118 ---DLADRLHWLPDDSVDLVLFALGL 140


>gi|296313818|ref|ZP_06863759.1| putative rRNA methylase [Neisseria polysaccharea ATCC 43768]
 gi|296839542|gb|EFH23480.1| putative rRNA methylase [Neisseria polysaccharea ATCC 43768]
          Length = 188

 Score = 44.4 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 7/83 (8%)

Query: 36  PGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQA 90
            G   LD T G  G+   F          V A D  P A++  +  +++       L   
Sbjct: 20  EGGNALDGTAGN-GHDTLFLAQTVGIRGKVWAFDVQPQALNNTRCRLQEAGYSNVRLILD 78

Query: 91  TFSQLQDYVPDKGVDGVVFDLGV 113
               L+ Y+P+  +D  VF+ G 
Sbjct: 79  GHENLKQYIPEP-LDAAVFNFGW 100


>gi|251781840|ref|YP_002996142.1| SAM-dependent methyltransferase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242390469|dbj|BAH80928.1| SAM-dependent methyltransferase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|323126654|gb|ADX23951.1| SAM-dependent methyltransferase [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 184

 Score = 44.4 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 33/90 (36%), Gaps = 7/90 (7%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-E 83
           L +V+         V++DAT G G  +    +    V A D    A+    E +      
Sbjct: 13  LAEVMD-----KSSVVVDATMGNGNDTAFLAQSAKKVYAFDVQEQAIRKTSERLAQLGLS 67

Query: 84  QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
              L  A    +  YV +  V   +F+LG 
Sbjct: 68  NAELILAGHEAVDQYVTEP-VRAAIFNLGY 96


>gi|325687100|gb|EGD29123.1| rRNA methylase [Streptococcus sanguinis SK72]
          Length = 183

 Score = 44.4 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 6/92 (6%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82
           +    +A +      +++DAT G  G+ +    K+   V A D    AV   ++ + +  
Sbjct: 7   MAHAFLAEVVTKED-IVVDATMGN-GHDTLFLAKLAKQVYAFDIQEQAVEKTRQRLAEAG 64

Query: 83  -EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
            +   L  A    L  Y         +F+LG 
Sbjct: 65  LDNAQLILAGHETLDQYTDHFK--AAIFNLGY 94


>gi|256377970|ref|YP_003101630.1| methyltransferase type 12 [Actinosynnema mirum DSM 43827]
 gi|255922273|gb|ACU37784.1| Methyltransferase type 12 [Actinosynnema mirum DSM 43827]
          Length = 258

 Score = 44.4 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 6/104 (5%)

Query: 23  VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRD 80
           V+  +V+A L PA   V+LD   G G  S     +      +A+D DP  ++ G+  + D
Sbjct: 32  VMF-EVLAHLKPAEDLVVLDLACGPGAISGRLLGLLPKARSVAVDVDPVLLAIGEGALGD 90

Query: 81  YKEQFSLFQATFS--QLQDYVPDKGVDG-VVFDLGVSSMQIDCG 121
              +    +A        D +   GVDG     L  +++     
Sbjct: 91  VDGRLRWVRADLRDPDWPDALGADGVDGTFDAVLSSTALHWLDP 134


>gi|70726161|ref|YP_253075.1| hypothetical protein SH1160 [Staphylococcus haemolyticus JCSC1435]
 gi|68446885|dbj|BAE04469.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 186

 Score = 44.4 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 33/85 (38%), Gaps = 6/85 (7%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91
                +++DAT G G  +    +     +V   D    A+    E ++ +    +L Q  
Sbjct: 18  IKQDSIVIDATCGNGNDTLFLAQQVSNGHVFGFDIQDTAIQSTFEKVKAF-NNVTLIQDG 76

Query: 92  FSQLQDYVP---DKGVDGVVFDLGV 113
              ++ ++       +D  +F+LG 
Sbjct: 77  HENIKKHIDIQFKGQIDAAIFNLGY 101


>gi|238763703|ref|ZP_04624662.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
           kristensenii ATCC 33638]
 gi|238698005|gb|EEP90763.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
           kristensenii ATCC 33638]
          Length = 429

 Score = 44.0 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85
            + LL+P  G+ ILD     GG +    +     +V+A+D D   +S  +E ++  K   
Sbjct: 238 CVDLLDPQNGEQILDLCAAPGGKTTHILEAAPKAHVLAIDIDEQRLSRVKENLQRLKLHA 297

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            +         ++  D+  D ++ D   S
Sbjct: 298 DVRVGDGRIPDEWCGDQQFDRILLDAPCS 326


>gi|145300988|ref|YP_001143829.1| ribosomal RNA small subunit methyltransferase B [Aeromonas
           salmonicida subsp. salmonicida A449]
 gi|142853760|gb|ABO92081.1| ribosomal RNA small subunit methyltransferase B [Aeromonas
           salmonicida subsp. salmonicida A449]
          Length = 430

 Score = 44.0 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 3/87 (3%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCGQETMRDYKEQFSL 87
           LL+P PG+ +LDA    GG +    +    +   +A+D D   +   QE +     Q  +
Sbjct: 238 LLDPQPGEWVLDACAAPGGKTAHLLERQPALAGVVAVDADENRLKRVQENLDRIGLQARV 297

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGVS 114
                S  + + P    D ++ D   S
Sbjct: 298 IHGDASTPELWWPQGQFDRILLDAPCS 324


>gi|332969910|gb|EGK08912.1| rRNA methylase [Desmospora sp. 8437]
          Length = 200

 Score = 44.0 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 8/87 (9%)

Query: 35  APGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQ 89
            PG   +DAT G G  +    +       V   D    A+   +E +R+     + +L +
Sbjct: 19  NPGSFAVDATVGNGNDTLFLARAVGVSGLVHGFDIQQEALDRTEERLREAGLAGRVTLHR 78

Query: 90  ATFSQLQDYVP---DKGVDGVVFDLGV 113
           A   Q+ + +P      V  V+F+LG 
Sbjct: 79  AGHEQMAETLPPDWRGKVRAVMFNLGY 105


>gi|326803839|ref|YP_004321657.1| putative rRNA methylase [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650099|gb|AEA00282.1| putative rRNA methylase [Aerococcus urinae ACS-120-V-Col10a]
          Length = 188

 Score = 44.0 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 42/115 (36%), Gaps = 21/115 (18%)

Query: 6   CKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM----GSNV 61
            K +    HH I  H                G   LDAT G  G+              V
Sbjct: 2   LKNVIEVSHHIIKGH-------------LQTGMTALDATIGN-GHDTLLLAQIVGQSGQV 47

Query: 62  IALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYV-PDKGVDGVVFDLGV 113
              D    A+   Q  +  +  +EQ SL+  + +++  Y+  D  +D V+F+LG 
Sbjct: 48  YGFDLQKQAIRATQALLEKHHCQEQVSLYHDSHAKISQYLKADDYLDLVIFNLGY 102


>gi|149411218|ref|XP_001514237.1| PREDICTED: similar to hepatocellular carcinoma-associated antigen
           137 [Ornithorhynchus anatinus]
          Length = 845

 Score = 44.0 bits (103), Expect = 0.031,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 2/68 (2%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96
           +++DA  G GG +  F   G  VIA+D DP  +   +   + Y   ++  L    F  L 
Sbjct: 673 IVVDAFCGVGGNAIQFALAGKRVIAIDIDPVKIDLARNNAQVYGVADRLELICGDFLLLA 732

Query: 97  DYVPDKGV 104
             +    V
Sbjct: 733 PNLKADVV 740


>gi|121996838|ref|YP_001001625.1| 23S rRNA 5-methyluridine methyltransferase [Halorhodospira
           halophila SL1]
 gi|121588243|gb|ABM60823.1| 23S rRNA m(5)U-1939 methyltransferase [Halorhodospira halophila
           SL1]
          Length = 434

 Score = 44.0 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 38/100 (38%), Gaps = 11/100 (11%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83
           ++E+ +  L P  G+ ILD   G G ++    + G+ V  ++ DP  V   +E       
Sbjct: 277 MVERALEWLQPQSGRRILDLFCGVGNFTLPLAREGATVTGIEGDPRLVERAEENAAANG- 335

Query: 84  QFSLFQATFSQLQDYVPD------KGVDGVVFDLGVSSMQ 117
                 A F+       +       G D V+ D   S  Q
Sbjct: 336 ----LHADFAVADLATEEGTRRVAGGFDAVLLDPPRSGAQ 371


>gi|125625315|ref|YP_001033798.1| hypothetical protein llmg_2562 [Lactococcus lactis subsp.
          cremoris MG1363]
 gi|124494123|emb|CAL99124.1| conserved hypothetical protein [Lactococcus lactis subsp.
          cremoris MG1363]
 gi|300072129|gb|ADJ61529.1| hypothetical protein LLNZ_13245 [Lactococcus lactis subsp.
          cremoris NZ9000]
          Length = 211

 Score = 44.0 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 31/66 (46%), Gaps = 5/66 (7%)

Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83
          +L+ +I +       V++DAT G G  +    ++G+ V A D    A+   ++ + +   
Sbjct: 11 MLKDIINV-----DDVVVDATMGNGYDTLFLAELGAKVYAFDVQEAALEATEKRLENKAI 65

Query: 84 QFSLFQ 89
          +  + +
Sbjct: 66 KTQIVK 71


>gi|157959859|ref|YP_001499893.1| sun protein [Shewanella pealeana ATCC 700345]
 gi|157844859|gb|ABV85358.1| sun protein [Shewanella pealeana ATCC 700345]
          Length = 426

 Score = 44.0 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 35/86 (40%), Gaps = 2/86 (2%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQFSLF 88
           LL P   +++LDA    GG +    ++  N  ++A+D D   +   Q+ +     +  L 
Sbjct: 235 LLAPQGDELVLDACAAPGGKTCHLLELAPNIKLVAVDFDAKRLERVQQNLDRLSLKAELV 294

Query: 89  QATFSQLQDYVPDKGVDGVVFDLGVS 114
               + +  +      D ++ D   S
Sbjct: 295 HGDAANIDSWWQGDKFDRILLDAPCS 320


>gi|299143842|ref|ZP_07036922.1| putative rRNA methylase [Peptoniphilus sp. oral taxon 386 str.
           F0131]
 gi|298518327|gb|EFI42066.1| putative rRNA methylase [Peptoniphilus sp. oral taxon 386 str.
           F0131]
          Length = 188

 Score = 44.0 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 53/141 (37%), Gaps = 17/141 (12%)

Query: 37  GKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATF 92
           GKV LDAT G G  S            + A D    A++   E ++    E F LF  + 
Sbjct: 23  GKVCLDATCGRGNDSLKLLDKIGIKGFLYACDIQEEAINSTMELLKSKGYENFKLFNKSH 82

Query: 93  SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQAN 152
           +++ DY+ +  +  ++++LG               +    +      + +S    +N  +
Sbjct: 83  TEVFDYIKEP-ISLIIYNLGYL------------PKSDKKVVTEADSTILSIERGLNSIS 129

Query: 153 VKDLTRILGILGEEKQASRIA 173
              +  ++  LG E      A
Sbjct: 130 KDGIIIVVSYLGHEGSFEERA 150


>gi|162447371|ref|YP_001620503.1| TrmA family RNA methyltransferase [Acholeplasma laidlawii PG-8A]
 gi|161985478|gb|ABX81127.1| RNA methyltransferase, TrmA family [Acholeplasma laidlawii PG-8A]
          Length = 451

 Score = 44.0 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 41/86 (47%), Gaps = 1/86 (1%)

Query: 26  EKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETM-RDYKEQ 84
            ++  L    P ++++DA  G    S    +   ++ A++ +  AV   + ++ +++ + 
Sbjct: 297 NEMKRLAQIKPTEIVVDAYAGIAPISHYIGQDAKHIYAIEINEDAVKSAKISLDQNHIDN 356

Query: 85  FSLFQATFSQLQDYVPDKGVDGVVFD 110
            ++ +  F    D + D  +D ++FD
Sbjct: 357 VTVIENNFEDALDNLKDIKIDVMLFD 382


>gi|152992522|ref|YP_001358243.1| hypothetical protein SUN_0928 [Sulfurovum sp. NBC37-1]
 gi|151424383|dbj|BAF71886.1| hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 439

 Score = 44.0 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 3/66 (4%)

Query: 15  HTIGDH---VPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAV 71
            T   H   V  L   V+ LL+P PG+ ILDA  G G  +    + G+ VI +D     V
Sbjct: 198 ETYNKHTAFVSQLALPVVDLLDPKPGEKILDAGCGEGALAEEIVRRGAEVIGVDLSAEMV 257

Query: 72  SCGQET 77
              ++ 
Sbjct: 258 DACRDR 263


>gi|328676686|gb|AEB27556.1| 23S rRNA (uracil-5-) -methyltransferase RumA [Francisella cf.
           novicida Fx1]
          Length = 449

 Score = 44.0 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 54/162 (33%), Gaps = 24/162 (14%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83
           ++++ I LL+ +    I+D   G G ++    +    VI ++ +P  V   +ET  D   
Sbjct: 289 MIQRAIELLDISENDSIIDLFCGLGNFTLPISQHAKTVIGVEGEPTMVKRAKETAADNN- 347

Query: 84  QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGIS 143
              +    F                      S +       F + K     M +      
Sbjct: 348 ---IVNVNFY---------------AANLFESFEDKEWFNNFEYNK-----MLLDPPRAG 384

Query: 144 ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           A +V N     ++ RI+ +  +    +R A  +V  +     
Sbjct: 385 AQEVCNNIEKFNVKRIVYVSCDTATLARDAGILVNTKGYKLI 426


>gi|320094507|ref|ZP_08026280.1| hypothetical protein HMPREF9005_0892 [Actinomyces sp. oral taxon
           178 str. F0338]
 gi|319978570|gb|EFW10140.1| hypothetical protein HMPREF9005_0892 [Actinomyces sp. oral taxon
           178 str. F0338]
          Length = 271

 Score = 44.0 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 2/66 (3%)

Query: 46  GAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ-DYVPDKGV 104
           G GG + +   +G  V+A+DRD  A +     +R +    ++ +   ++L  + + D+G+
Sbjct: 108 GVGGDALAIAGLGLRVLAVDRDQDASAAAAINLRHFDG-ANVLRGDVAELDMEDLRDQGI 166

Query: 105 DGVVFD 110
           D V  D
Sbjct: 167 DAVFAD 172


>gi|145628159|ref|ZP_01783960.1| conserved hypothetical SAM-dependent methyltransferase [Haemophilus
           influenzae 22.1-21]
 gi|144979934|gb|EDJ89593.1| conserved hypothetical SAM-dependent methyltransferase [Haemophilus
           influenzae 22.1-21]
          Length = 254

 Score = 44.0 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 11/96 (11%)

Query: 22  PVLLEKVIA------LLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCG 74
           P+ L ++I       LL    GK +LD   G GG+ + + + G + VI  D     +   
Sbjct: 24  PISLNEIIEKPTMLSLLPDLKGKKLLDLGCGTGGHLQLYLERGAAKVIGTDLSEKMLEQA 83

Query: 75  QETMR---DYKEQFSLFQATFSQLQDYVPDKGVDGV 107
           ++ ++    +  +FSL+Q    +L + +P+   D +
Sbjct: 84  EKDLQKCGQFSGRFSLYQLPMEKLAE-LPESDFDII 118


>gi|238021263|ref|ZP_04601689.1| hypothetical protein GCWU000324_01161 [Kingella oralis ATCC 51147]
 gi|237868243|gb|EEP69249.1| hypothetical protein GCWU000324_01161 [Kingella oralis ATCC 51147]
          Length = 191

 Score = 44.0 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 27/80 (33%), Gaps = 7/80 (8%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK--EQFSL 87
              G  +LD T G  G+              V A D    A++   + ++ ++  E+  L
Sbjct: 18  IHAGDTVLDGTAGN-GHDTLLLAQLVGSAGKVYAFDIQDSALAATADRLQQHQLIERVQL 76

Query: 88  FQATFSQLQDYVPDKGVDGV 107
             A    L  +V       +
Sbjct: 77  IHAGHQHLARHVKQPIAAAI 96


>gi|312197170|ref|YP_004017231.1| methyltransferase type 12 [Frankia sp. EuI1c]
 gi|311228506|gb|ADP81361.1| Methyltransferase type 12 [Frankia sp. EuI1c]
          Length = 276

 Score = 44.0 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 5/79 (6%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETM----RDYKEQFSLFQ 89
           P P   ILD   G G  +R+  ++G  V   D DP  +    E +       +++ +L  
Sbjct: 51  PTPPGRILDVGGGEGTQARALARLGYEVTICDPDPEMLRQADERLSGADAAVRDRITLVH 110

Query: 90  ATFSQLQDYVPDKGVDGVV 108
                    V   G DGV+
Sbjct: 111 GDGHDAASLVG-GGWDGVL 128


>gi|218461825|ref|ZP_03501916.1| S-adenosyl-methyltransferase MraW [Rhizobium etli Kim 5]
          Length = 40

 Score = 44.0 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 24/40 (60%)

Query: 61  VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP 100
           +IALDRDP A++ GQ  +  +  +  L  + FS L D+ P
Sbjct: 1   MIALDRDPTAIAAGQAMVAAHGGRLRLVHSQFSHLADHAP 40


>gi|308068128|ref|YP_003869733.1| SAM-dependent methyltransferase [Paenibacillus polymyxa E681]
 gi|305857407|gb|ADM69195.1| SAM-dependent methyltransferase [Paenibacillus polymyxa E681]
          Length = 193

 Score = 44.0 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 37/98 (37%), Gaps = 10/98 (10%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDYKE----QFS 86
             PG   +DAT G G  +    K       V   D    A+ C +  + +       + S
Sbjct: 18  VQPGDTAIDATVGTGADTLFLAKAAGKRGRVYGFDIQQEALHCARRRLEENASPSLAEVS 77

Query: 87  LFQATFSQLQDYVPDK---GVDGVVFDLGVSSMQIDCG 121
           L   +  Q+++ VPD     V  V+F+LG    +    
Sbjct: 78  LQLQSHEQMREAVPDMLHGKVAAVMFNLGYLPSEGADP 115


>gi|238758791|ref|ZP_04619965.1| Ribosomal RNA small subunit methyltransferase B [Yersinia aldovae
           ATCC 35236]
 gi|238703088|gb|EEP95631.1| Ribosomal RNA small subunit methyltransferase B [Yersinia aldovae
           ATCC 35236]
          Length = 429

 Score = 44.0 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85
            + LL+P  G+ ILD     GG +    +     +V+A+D D   +S  +E ++      
Sbjct: 238 CVDLLDPQDGEQILDLCAAPGGKTTHILEAAPKAHVLAIDIDEQRLSRVKENLQRLNLHA 297

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            +         ++  D+  D ++ D   S
Sbjct: 298 VVRVGDGRTPDEWCGDQQFDRILLDAPCS 326


>gi|301777476|ref|XP_002924156.1| PREDICTED: trimethylguanosine synthase-like [Ailuropoda
           melanoleuca]
          Length = 852

 Score = 44.0 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 2/68 (2%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96
           +++DA  G GG +  F   G  VIA+D DP  +   +     Y   ++       F  L 
Sbjct: 692 IVVDAFCGVGGNTIQFALTGKRVIAIDIDPVKIDLARNNAEVYGIADKIEFICGDFLLLA 751

Query: 97  DYVPDKGV 104
            ++    V
Sbjct: 752 SHLKADVV 759


>gi|281337792|gb|EFB13376.1| hypothetical protein PANDA_013430 [Ailuropoda melanoleuca]
          Length = 852

 Score = 44.0 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 2/68 (2%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96
           +++DA  G GG +  F   G  VIA+D DP  +   +     Y   ++       F  L 
Sbjct: 692 IVVDAFCGVGGNTIQFALTGKRVIAIDIDPVKIDLARNNAEVYGIADKIEFICGDFLLLA 751

Query: 97  DYVPDKGV 104
            ++    V
Sbjct: 752 SHLKADVV 759


>gi|163789339|ref|ZP_02183780.1| putative MerR-family transcriptional regulator [Flavobacteriales
           bacterium ALC-1]
 gi|159875407|gb|EDP69470.1| putative MerR-family transcriptional regulator [Flavobacteriales
           bacterium ALC-1]
          Length = 261

 Score = 44.0 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 56/171 (32%), Gaps = 18/171 (10%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83
           L E+++  LNP    + LD   G G Y+    K G   I +D     +   +      + 
Sbjct: 22  LTEQLLKHLNPNKNGLYLDIGCGTGNYTSDLQKKGFQFIGIDPSIEMLQKAKAQNEAVEW 81

Query: 84  QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFS-----FQKSGPLDMRMS 138
           +        S  +  +P + +DG+V  L +         R  S      + +G + +  S
Sbjct: 82  KIG------SAEKTNLPKESIDGIVGTLTI--HHWSNLTRALSELNYVLKPNGKIVLFTS 133

Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQ 189
                    +N    K L   +    +      +  A+          TT+
Sbjct: 134 TPQQMKGYWLNHYFPKMLEDSMK---QMPTFEAVEGAM--SNSDFKITTTE 179


>gi|325496175|gb|EGC94034.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia fergusonii
           ECD227]
          Length = 432

 Score = 44.0 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 3/90 (3%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82
           ++ + I  L+  P   +LD   G G ++ +     ++V+ ++  P  V  G+E  R+   
Sbjct: 274 MVAQAIEWLDIQPQDRVLDLFCGMGNFTLALATRAASVVGVEGVPALVEKGRENARENGL 333

Query: 83  EQFSLFQATFSQ--LQDYVPDKGVDGVVFD 110
              + +         +      G D V+ D
Sbjct: 334 ANVTFYHENLEDDVTKQPWAKNGFDKVLLD 363


>gi|302841478|ref|XP_002952284.1| hypothetical protein VOLCADRAFT_62249 [Volvox carteri f.
           nagariensis]
 gi|300262549|gb|EFJ46755.1| hypothetical protein VOLCADRAFT_62249 [Volvox carteri f.
           nagariensis]
          Length = 272

 Score = 44.0 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 32/96 (33%), Gaps = 16/96 (16%)

Query: 31  LLNPAPGKVILDA--------TFGAGGYSRSFCKMGSNVIALDRDP--FAVSCGQETMRD 80
            L P PG  ++D         T     +  +  K    V+A D+DP   A      ++  
Sbjct: 38  ALAPEPGWTVVDCCAAPGNKTT-----HLAAIMKNQGRVLAFDKDPRRLARLKANASLVG 92

Query: 81  YKEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSS 115
                    A F  L    P+   V GV+ D   S 
Sbjct: 93  ATSCVEARLADFLSLDPTAPEFKEVRGVLLDPSCSG 128


>gi|332158464|ref|YP_004423743.1| nol1-nop2-sun family nucleolar protein III [Pyrococcus sp. NA2]
 gi|331033927|gb|AEC51739.1| nol1-nop2-sun family nucleolar protein III [Pyrococcus sp. NA2]
          Length = 388

 Score = 43.6 bits (102), Expect = 0.038,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 11/91 (12%)

Query: 32  LNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQFSL 87
           L P    VI+D T   GG   +     +    +IA+D+    +   +E ++    +   L
Sbjct: 196 LEPREDDVIIDMTAAPGGKTTHIAQLLQNRGEIIAIDKSKNRLKKMEENLKRLGVKNVKL 255

Query: 88  FQATFSQLQDYVPDKGVDGVVFD-----LGV 113
            Q     L D       D ++ D     LGV
Sbjct: 256 IQMDARNLPDL--GIKADKILLDAPCTALGV 284


>gi|218547699|ref|YP_002381490.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia fergusonii
           ATCC 35469]
 gi|218355240|emb|CAQ87847.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia fergusonii ATCC
           35469]
 gi|324111189|gb|EGC05172.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia fergusonii
           B253]
          Length = 432

 Score = 43.6 bits (102), Expect = 0.038,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 3/90 (3%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82
           ++ + I  L+  P   +LD   G G ++ +     ++V+ ++  P  V  G+E  R+   
Sbjct: 274 MVAQAIEWLDIQPQDRVLDLFCGMGNFTLALATRAASVVGVEGVPALVEKGRENARENGL 333

Query: 83  EQFSLFQATFSQ--LQDYVPDKGVDGVVFD 110
              + +         +      G D V+ D
Sbjct: 334 ANVTFYHENLEDDVTKQPWAKNGFDKVLLD 363


>gi|254372579|ref|ZP_04988068.1| RNA methyltransferase [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|151570306|gb|EDN35960.1| RNA methyltransferase [Francisella novicida GA99-3549]
          Length = 449

 Score = 43.6 bits (102), Expect = 0.038,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 54/162 (33%), Gaps = 24/162 (14%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83
           ++++ I LL+ +    I+D   G G ++    +    VI ++ +P  V   +ET  D   
Sbjct: 289 MIKRAIELLDISENDSIIDLFCGLGNFTLPISQHAKTVIGVEGEPTMVKRAKETAADNN- 347

Query: 84  QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGIS 143
              +    F                      S +       F + K     M +      
Sbjct: 348 ---IVNVNFY---------------AANLFESFEDKEWFNNFEYNK-----MLLDPPRAG 384

Query: 144 ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           A +V N     ++ RI+ +  +    +R A  +V  +     
Sbjct: 385 AQEVCNNIEKFNVKRIVYVSCDTATLARDAGILVNTKGYKLI 426


>gi|148828090|ref|YP_001292843.1| hypothetical protein CGSHiGG_08120 [Haemophilus influenzae PittGG]
 gi|148719332|gb|ABR00460.1| hypothetical protein CGSHiGG_08120 [Haemophilus influenzae PittGG]
          Length = 254

 Score = 43.6 bits (102), Expect = 0.038,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 65/174 (37%), Gaps = 29/174 (16%)

Query: 22  PVLLEKVIA---LLNPAP---GKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCG 74
           P+ L ++I    +L+  P   GK +LD   G GG+ + + +   + VI  D     +   
Sbjct: 24  PISLNEIIEKPTMLSLLPNLKGKKLLDLGCGTGGHLQLYLEREAAKVIGTDLSEKMLEQA 83

Query: 75  QETMR---DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG 131
           ++ ++    +  +FSL+     +L + +P+   D +      SS         F+F    
Sbjct: 84  EKDLQKCGQFSARFSLYHLPMEKLAE-LPESHFDVI-----TSS---------FAFHYIE 128

Query: 132 PLDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSA 183
                +S     +S++  +  +    +T        E+         V  R + 
Sbjct: 129 NFPTLLSTIHDKLSSNGTLIFSQEHPITTCHKE--GERWEKNDKKQQVAYRLNH 180


>gi|24371630|ref|NP_715672.1| sun protein [Shewanella oneidensis MR-1]
 gi|46396921|sp|Q8EKR0|RSMB_SHEON RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|24345386|gb|AAN53117.1|AE015454_11 sun protein [Shewanella oneidensis MR-1]
          Length = 428

 Score = 43.6 bits (102), Expect = 0.038,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 2/86 (2%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88
           LL P   ++ILDA    GG S    ++     +IA+D D   +   Q+ +     +  + 
Sbjct: 235 LLAPQANELILDACAAPGGKSCHLLELEPSIKLIAVDFDAKRLERVQQNLDRLSLKAEVI 294

Query: 89  QATFSQLQDYVPDKGVDGVVFDLGVS 114
               + +  +   +  D ++ D   S
Sbjct: 295 HGDAANIDSWWQGEQFDRILLDAPCS 320


>gi|289192404|ref|YP_003458345.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Methanocaldococcus sp. FS406-22]
 gi|288938854|gb|ADC69609.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Methanocaldococcus sp. FS406-22]
          Length = 186

 Score = 43.6 bits (102), Expect = 0.038,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 38/101 (37%), Gaps = 5/101 (4%)

Query: 5   SCKTMSSAIHHTIGDHVPVLLEKV----IALLNPAPGKVILDATFGAGGYSRSFCKMGSN 60
             K M         + VP+  E++    I  LN     V++D   G+GG +    +    
Sbjct: 3   KVKYMIPDEEFIRREGVPITKEEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIARRCKF 62

Query: 61  VIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQLQDYVP 100
           V A+D    A+   ++ +  +  +   + +     + D + 
Sbjct: 63  VYAIDYLEDAIEVTKQNLAKFNIKNCQIIKGRAEDILDKLE 103


>gi|120404221|ref|YP_954050.1| type 11 methyltransferase [Mycobacterium vanbaalenii PYR-1]
 gi|119957039|gb|ABM14044.1| Methyltransferase type 11 [Mycobacterium vanbaalenii PYR-1]
          Length = 208

 Score = 43.6 bits (102), Expect = 0.039,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 8/97 (8%)

Query: 21  VPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETM 78
           VPVLL      L P  G + +    G G  S+   +      + A+D DP  +   +  +
Sbjct: 23  VPVLLR-FGGRLPPGSGALEIGCGSGYG--SQLVLQRFGAARIDAVDLDPAMIERARTRL 79

Query: 79  RDYKEQFSLFQATFSQLQDYV--PDKGVDGVVFDLGV 113
             Y ++  L   + + L++ +   D   D V FD G+
Sbjct: 80  APYGDRVHLATGSATDLREALNADDGSYDAV-FDFGI 115


>gi|321456618|gb|EFX67720.1| hypothetical protein DAPPUDRAFT_63741 [Daphnia pulex]
          Length = 221

 Score = 43.6 bits (102), Expect = 0.039,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 2/68 (2%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96
           +I+DA  GAGG S  F      VIA+D DP  +   +     Y   ++       F QL 
Sbjct: 67  LIVDAFCGAGGNSIQFAFKCERVIAIDIDPSKIELARHNASVYGVADRIEFIVGDFFQLA 126

Query: 97  DYVPDKGV 104
             +    V
Sbjct: 127 PSLKADVV 134


>gi|296875985|ref|ZP_06900044.1| rRNA methylase [Streptococcus parasanguinis ATCC 15912]
 gi|296433060|gb|EFH18848.1| rRNA methylase [Streptococcus parasanguinis ATCC 15912]
          Length = 185

 Score = 43.6 bits (102), Expect = 0.039,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 10/91 (10%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFC-KMGSNVIALDRDPFAVSCGQETMRDYK- 82
           L +VI         V++DAT G  G+  +F  K+   V A D    A+   QE +     
Sbjct: 12  LAEVI----TKED-VVVDATMGN-GHDTAFLAKLAGQVYAFDIQEQALVNTQERLEKLGL 65

Query: 83  EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
           +   L       +  YV        +F+LG 
Sbjct: 66  QHVQLILDGHQHVDQYVETLK--AAIFNLGY 94


>gi|157151080|ref|YP_001450937.1| methyltransferase [Streptococcus gordonii str. Challis substr. CH1]
 gi|157075874|gb|ABV10557.1| methyltransferase [Streptococcus gordonii str. Challis substr. CH1]
          Length = 184

 Score = 43.6 bits (102), Expect = 0.039,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 6/92 (6%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82
           +    +A +      +++DAT G  G+ +    K+   V A D    AV   ++ + +  
Sbjct: 7   MAHAFLAEVVTKED-IVVDATMGN-GHDTLFLAKLAKQVYAFDIQEQAVEKTRQRLAEAG 64

Query: 83  -EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
            +   L  A    L  Y         +F+LG 
Sbjct: 65  LDNAQLILAGHETLDQYTDHFK--AAIFNLGY 94


>gi|317130009|ref|YP_004096291.1| rRNA methylase [Bacillus cellulosilyticus DSM 2522]
 gi|315474957|gb|ADU31560.1| rRNA methylase [Bacillus cellulosilyticus DSM 2522]
          Length = 192

 Score = 43.6 bits (102), Expect = 0.040,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 8/89 (8%)

Query: 33  NPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRD--YKEQFSL 87
               G V++DAT G G  +    K+      V + D    A++  ++ + +        L
Sbjct: 18  AVTEGDVVIDATAGKGNDTLFLSKLVSNTGKVYSFDIQEAAITATRKKLAENNQDSNVQL 77

Query: 88  FQATFSQLQDYVPDK---GVDGVVFDLGV 113
                 +L +Y+       + G +F+LG 
Sbjct: 78  IHDGHEKLLNYLDQDDYENIAGAIFNLGY 106


>gi|327462037|gb|EGF08366.1| rRNA methylase [Streptococcus sanguinis SK1057]
          Length = 183

 Score = 43.6 bits (102), Expect = 0.040,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 35/92 (38%), Gaps = 6/92 (6%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82
           +    +A +      V++DAT G  G+ +    K+   V A D    AV   ++ + +  
Sbjct: 7   MAHAFLAEVVTKED-VVVDATMGN-GHDTLFLAKLAKQVYAFDIQEQAVEKTRQRLAEAG 64

Query: 83  -EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
            +   L  A    L  Y         +F+LG 
Sbjct: 65  LDNAQLILAGHETLDQY--TNHFKAAIFNLGY 94


>gi|126668178|ref|ZP_01739139.1| Fmu, rRNA SAM-dependent methyltransferase [Marinobacter sp. ELB17]
 gi|126627327|gb|EAZ97963.1| Fmu, rRNA SAM-dependent methyltransferase [Marinobacter sp. ELB17]
          Length = 432

 Score = 43.6 bits (102), Expect = 0.041,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 3/90 (3%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMRDYKEQ 84
              LL+ APG+ ILDA    GG + +  +     + V+A+D     +   QE +      
Sbjct: 234 CTTLLDLAPGQRILDACAAPGGKTCAILESCPQAAEVVAIDESAQRLPRVQENLDRLDLH 293

Query: 85  FSLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            SL QA  + +  +   +  D ++ DL  S
Sbjct: 294 ASLLQADAADIDQWWDGQPFDRILLDLPCS 323


>gi|126650083|ref|ZP_01722316.1| hypothetical protein BB14905_02395 [Bacillus sp. B14905]
 gi|126593255|gb|EAZ87217.1| hypothetical protein BB14905_02395 [Bacillus sp. B14905]
          Length = 246

 Score = 43.6 bits (102), Expect = 0.041,   Method: Composition-based stats.
 Identities = 31/100 (31%), Positives = 41/100 (41%), Gaps = 4/100 (4%)

Query: 11  SAIHHTIGD-HVPVLLEKVI-ALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDP 68
           +A +H  GD H  VLL   I +LL    GK +LDA  G G  SR   K G+ V A+D   
Sbjct: 18  TANYHEYGDIHREVLLNPTIFSLLGEVDGKHLLDAGCGEGYLSRLLVKQGAIVTAVDFSQ 77

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVV 108
             +    E           F      L  ++ D   D +V
Sbjct: 78  KMLDIAMERTPQQLP-VQFFHGNCENL-TFLADNQFDCIV 115


>gi|242040693|ref|XP_002467741.1| hypothetical protein SORBIDRAFT_01g033250 [Sorghum bicolor]
 gi|241921595|gb|EER94739.1| hypothetical protein SORBIDRAFT_01g033250 [Sorghum bicolor]
          Length = 690

 Score = 43.6 bits (102), Expect = 0.041,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 2/65 (3%)

Query: 38  KVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQL 95
            VI+D   G GG +  F     +VIA+D DP  + C       Y   +        F  +
Sbjct: 531 GVIIDCFTGVGGNAIQFATKCKHVIAVDIDPQKIDCAHHNASIYGVNDHIDFIVGDFIHI 590

Query: 96  QDYVP 100
             ++ 
Sbjct: 591 APHLK 595


>gi|75763382|ref|ZP_00743117.1| SAM-dependent methyltransferase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|218899906|ref|YP_002448317.1| hypothetical protein BCG9842_B0375 [Bacillus cereus G9842]
 gi|74489132|gb|EAO52613.1| SAM-dependent methyltransferase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|218545685|gb|ACK98079.1| conserved hypothetical protein [Bacillus cereus G9842]
          Length = 190

 Score = 43.6 bits (102), Expect = 0.041,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 10/90 (11%)

Query: 33  NPAPGKVILDATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFS 86
               G   +DAT G  G+              V   D    A+      +++ +  E+  
Sbjct: 17  AVKEGDYAVDATLGN-GHDTCFLAEIVGDSGKVFGFDIQKEAIESSTTHLKEKELFERTV 75

Query: 87  LFQATFSQLQDYVPDK---GVDGVVFDLGV 113
           L   +   L   +P+     V G +F+LG 
Sbjct: 76  LVHDSHDTLLSVLPEDAKGKVTGAIFNLGY 105


>gi|332362266|gb|EGJ40066.1| rRNA methylase [Streptococcus sanguinis SK1056]
          Length = 183

 Score = 43.6 bits (102), Expect = 0.041,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 6/92 (6%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82
           +    +A +      V++DAT G  G+ +    ++   V A D    AV   ++ + +  
Sbjct: 7   MAHAFLAEVVTKED-VVVDATMGN-GHDTLFLAQLAKQVYAFDIQEQAVEKTRQRLTEAG 64

Query: 83  -EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
            +   L  A    L  Y         +F+LG 
Sbjct: 65  LDNVQLILAGHETLDQYTEHFK--AAIFNLGY 94


>gi|125718569|ref|YP_001035702.1| hypothetical protein SSA_1769 [Streptococcus sanguinis SK36]
 gi|125498486|gb|ABN45152.1| Conserved hypothetical protein [Streptococcus sanguinis SK36]
          Length = 183

 Score = 43.6 bits (102), Expect = 0.041,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 35/92 (38%), Gaps = 6/92 (6%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82
           +    +A +      +++DAT G  G+ +    ++   V A D    AV   ++ + +  
Sbjct: 7   MAHAFLAEVVTKED-IVVDATMGN-GHDTLFLAQLAKQVYAFDIQEQAVEKTRQRLAEAG 64

Query: 83  -EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
            +   L  A    L  Y         +F+LG 
Sbjct: 65  LDNAQLILAGHETLDQYTDHFK--AAIFNLGY 94


>gi|320104694|ref|YP_004180285.1| type 11 methyltransferase [Isosphaera pallida ATCC 43644]
 gi|319751976|gb|ADV63736.1| Methyltransferase type 11 [Isosphaera pallida ATCC 43644]
          Length = 316

 Score = 43.6 bits (102), Expect = 0.043,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 6/88 (6%)

Query: 26  EKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK 82
           ++++A L   PG V+ D   GAG ++    ++      VIA D  P  +   +  +R   
Sbjct: 120 DEMLAALKIKPGMVVADVGAGAGFHTLRLARLVGPTGTVIATDVQPQMIQLLRNNVRQA- 178

Query: 83  EQFSLFQATFSQLQDY-VPDKGVDGVVF 109
            + +  +       D  +P   VD V+ 
Sbjct: 179 -RLTNVKPVVCTHDDAKLPKGAVDLVLM 205


>gi|328946868|gb|EGG41005.1| rRNA methylase [Streptococcus sanguinis SK1087]
          Length = 183

 Score = 43.6 bits (102), Expect = 0.043,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 34/92 (36%), Gaps = 6/92 (6%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82
           +    +A +      +++DAT G  G+ +    K+   V A D    AV   ++ +    
Sbjct: 7   MAHAFLAEVVTKED-IVVDATMGN-GHDTLFLAKLAKQVYAFDIQEQAVEKTRQRLAKAG 64

Query: 83  -EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
            +   L  A    L  Y         +F+LG 
Sbjct: 65  LDNAQLILAGHETLDQYTDHFK--AAIFNLGY 94


>gi|293393280|ref|ZP_06637594.1| RNA methyltransferase Sun [Serratia odorifera DSM 4582]
 gi|291424190|gb|EFE97405.1| RNA methyltransferase Sun [Serratia odorifera DSM 4582]
          Length = 429

 Score = 43.6 bits (102), Expect = 0.043,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85
            + LL+P  G+ ILD     GG +    +     +V+A+D D   +S   E ++  +   
Sbjct: 238 CVDLLDPQDGEQILDLCAAPGGKTTHILEAAPKAHVMAVDIDEQRLSRVNENLQRLRFSA 297

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            + Q      Q +  DK  D ++ D   S
Sbjct: 298 EVKQGDGRTPQQWCGDKQFDRILLDAPCS 326


>gi|332359111|gb|EGJ36932.1| rRNA methylase [Streptococcus sanguinis SK49]
          Length = 183

 Score = 43.6 bits (102), Expect = 0.043,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 35/92 (38%), Gaps = 6/92 (6%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82
           +    +A +      +++DAT G  G+ +    K+   V A D    AV   ++ + +  
Sbjct: 7   MAHAFLAEVVTKED-IVVDATMGN-GHDTLFLAKLAKQVYAFDIQEQAVEKTRQRLAEAD 64

Query: 83  -EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
            +   L  A    +  Y         +F+LG 
Sbjct: 65  LDNAQLILAGHETMDQYTDHFK--AAIFNLGY 94


>gi|163753506|ref|ZP_02160630.1| putative MerR-family transcriptional regulator [Kordia algicida
           OT-1]
 gi|161327238|gb|EDP98563.1| putative MerR-family transcriptional regulator [Kordia algicida
           OT-1]
          Length = 262

 Score = 43.6 bits (102), Expect = 0.044,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 53/148 (35%), Gaps = 13/148 (8%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84
           LE++   LNP    + LD   G G Y+       +  I +D     ++  Q+        
Sbjct: 23  LERIQYHLNPIHEGIYLDIGCGTGNYTSKLHNKETKFIGIDPSQKMLNIAQKN----HPT 78

Query: 85  FSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFS--FQKSGP-LDMRMSCSG 141
                     +   + +  ++GVV  L  +    D  ++GFS  F+   P  ++    + 
Sbjct: 79  IDWKLGAAENIP--LKNNSIEGVVGTL--TLHHWDNLEKGFSELFRVMKPYANIVFFTAT 134

Query: 142 ISASD--VVNQANVKDLTRILGILGEEK 167
            +  +   +N    K L   +  +   K
Sbjct: 135 PTQMEGYWLNHYFPKMLADSIAQMPSLK 162


>gi|311693681|gb|ADP96554.1| 23S rRNA 5-methyluridine methyltransferase [marine bacterium HP15]
          Length = 436

 Score = 43.6 bits (102), Expect = 0.044,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 36/92 (39%), Gaps = 7/92 (7%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82
           ++ + +  L+  PG+ +LD   G G ++      G  V+ ++ D   V  G+E       
Sbjct: 276 MVHRAVEWLDVQPGERVLDLFCGLGNFTLPLATRGGQVVGVEGDETMVVRGRENAELNGL 335

Query: 83  EQFSLF----QATFSQLQDYVPDKGVDGVVFD 110
           +  +         F+        +G D ++ D
Sbjct: 336 DNVAFHGADLHGDFT--GQSWAKEGFDKILID 365


>gi|302530477|ref|ZP_07282819.1| methyltransferase type 11 [Streptomyces sp. AA4]
 gi|302439372|gb|EFL11188.1| methyltransferase type 11 [Streptomyces sp. AA4]
          Length = 237

 Score = 43.6 bits (102), Expect = 0.044,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 4/84 (4%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSL 87
            + LL    G+ +LDA  G G Y+      G+ V   D  P  V   +E + + + +   
Sbjct: 36  CLELLGDVAGQHVLDAACGPGLYAEELTARGARVTGFDLSPRMVELSRERVPEGEFRVQ- 94

Query: 88  FQATFSQLQDYVPDKGVDGVVFDL 111
                ++   ++PD  VD V+F L
Sbjct: 95  ---DLAEPLTWLPDASVDQVLFAL 115


>gi|295982627|pdb|3MTI|A Chain A, The Crystal Structure Of A Rrna Methylase From
           Streptococcus Thermophilus To 1.95a
 gi|295982628|pdb|3MTI|B Chain B, The Crystal Structure Of A Rrna Methylase From
           Streptococcus Thermophilus To 1.95a
          Length = 185

 Score = 43.6 bits (102), Expect = 0.044,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 7/90 (7%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-E 83
           L +V+         +++DAT G G  +     +   V A D    A+    + + D   E
Sbjct: 16  LAEVLD-----DESIVVDATXGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLGIE 70

Query: 84  QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
              L       L  YV +  +   +F+LG 
Sbjct: 71  NTELILDGHENLDHYVREP-IRAAIFNLGY 99


>gi|283835447|ref|ZP_06355188.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Citrobacter youngae
           ATCC 29220]
 gi|291068628|gb|EFE06737.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Citrobacter youngae
           ATCC 29220]
          Length = 432

 Score = 43.6 bits (102), Expect = 0.045,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 37/90 (41%), Gaps = 3/90 (3%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET-MRDYK 82
           ++ + +  L+  PG  +LD   G G ++    +  ++V+ ++  P  V   +E  + +  
Sbjct: 274 MVARALEWLDVQPGDRVLDLFCGMGNFTLPLARRAASVVGVEGVPALVEKARENALNNGL 333

Query: 83  EQFSLFQATFSQ--LQDYVPDKGVDGVVFD 110
              + F     +   +      G D V+ D
Sbjct: 334 HNVTFFHENLEEDVTRQPWAKNGFDKVLLD 363


>gi|225011697|ref|ZP_03702135.1| Fmu (Sun) domain protein [Flavobacteria bacterium MS024-2A]
 gi|225004200|gb|EEG42172.1| Fmu (Sun) domain protein [Flavobacteria bacterium MS024-2A]
          Length = 403

 Score = 43.6 bits (102), Expect = 0.045,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 7/91 (7%)

Query: 30  ALLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFS 86
             +NP PG  I+DA  GAGG   +  +  +   N+IA+D  P  +    +    ++ + +
Sbjct: 218 HWVNPKPGMKIIDACAGAGGKTLHMAALMENKGNIIAIDNYPKKLEQLIKR--AHRNRIN 275

Query: 87  LFQATFSQLQDYVPDK--GVDGVVFDLGVSS 115
           + Q   +             D V+ D   S 
Sbjct: 276 IIQTNDASEITVFESNLEKADVVLIDAPCSG 306


>gi|332709849|ref|ZP_08429806.1| methylase involved in ubiquinone/menaquinone biosynthesis
          [Lyngbya majuscula 3L]
 gi|332351447|gb|EGJ31030.1| methylase involved in ubiquinone/menaquinone biosynthesis
          [Lyngbya majuscula 3L]
          Length = 297

 Score = 43.6 bits (102), Expect = 0.045,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83
          +++++      PG ++LDA  G G ++R   ++ S V+ +D D   ++  +E  +D   
Sbjct: 42 VKEILGF--VRPGDMVLDAGCGTGQHARYLAEVASKVVGIDTDSARIAIAKEHCQDLDN 98


>gi|309800616|ref|ZP_07694760.1| rRNA methylase [Streptococcus infantis SK1302]
 gi|308115762|gb|EFO53294.1| rRNA methylase [Streptococcus infantis SK1302]
          Length = 185

 Score = 43.6 bits (102), Expect = 0.045,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 33/88 (37%), Gaps = 7/88 (7%)

Query: 30  ALLN--PAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQF 85
             L        +++DAT G  G+ +    K+   V A D    A+    + +++      
Sbjct: 10  DFLAQVITQEDIVVDATMGN-GHDTLFLAKLAKQVYAFDIQEQALEKTSQRLQEADLTNV 68

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGV 113
            L       +  +V +  V   +F+LG 
Sbjct: 69  ELILQGHETVDQFVRE--VKAAIFNLGY 94


>gi|228999537|ref|ZP_04159115.1| hypothetical protein bmyco0003_40920 [Bacillus mycoides Rock3-17]
 gi|229007095|ref|ZP_04164721.1| hypothetical protein bmyco0002_39940 [Bacillus mycoides Rock1-4]
 gi|228754140|gb|EEM03559.1| hypothetical protein bmyco0002_39940 [Bacillus mycoides Rock1-4]
 gi|228760248|gb|EEM09216.1| hypothetical protein bmyco0003_40920 [Bacillus mycoides Rock3-17]
          Length = 177

 Score = 43.6 bits (102), Expect = 0.045,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 10/90 (11%)

Query: 33  NPAPGKVILDATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFS 86
               G   +DAT G  G+              V   D    A+      +++    E+  
Sbjct: 4   AVKEGDYAVDATLGN-GHDTCFLAEIVGEHGKVFGFDIQRKAIESSATHLKERGLEERTV 62

Query: 87  LFQATFSQLQDYVPDK---GVDGVVFDLGV 113
           L   +   L   +P++    V G +F+LG 
Sbjct: 63  LVHDSHDTLLSVLPEEAKGKVTGAIFNLGY 92


>gi|225077173|ref|ZP_03720372.1| hypothetical protein NEIFLAOT_02228 [Neisseria flavescens
           NRL30031/H210]
 gi|224951521|gb|EEG32730.1| hypothetical protein NEIFLAOT_02228 [Neisseria flavescens
           NRL30031/H210]
          Length = 189

 Score = 43.6 bits (102), Expect = 0.045,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 34/96 (35%), Gaps = 13/96 (13%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMR 79
           LL + +       G   LDAT G  G+              V A D    A+   Q  ++
Sbjct: 13  LLRQAL-----KAGGRALDATAGN-GHDTLLLAQSVGETGRVWAFDVQSKALMQTQGRLK 66

Query: 80  D--YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
           +     + +L       L  Y+ +  +D  VF+ G 
Sbjct: 67  ENGVDGRVALIHDGHENLSSYIDEP-LDAAVFNFGW 101


>gi|269929208|ref|YP_003321529.1| methyltransferase type 11 [Sphaerobacter thermophilus DSM 20745]
 gi|269788565|gb|ACZ40707.1| Methyltransferase type 11 [Sphaerobacter thermophilus DSM 20745]
          Length = 250

 Score = 43.6 bits (102), Expect = 0.046,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 8/83 (9%)

Query: 11  SAIHHTIGDHVPVLLEKVIALLNPAPGKVI--LDATFGAGGYSRSFCKMGS--NVIALDR 66
            AI  +  +HV +L     +L+   P +    +D   GAGG S +  +      V+ALD 
Sbjct: 27  DAITPSRAEHVALL----TSLIPVRPDEPFLAVDLACGAGGLSAAILERFPASQVVALDG 82

Query: 67  DPFAVSCGQETMRDYKEQFSLFQ 89
               +   +  +  Y  +  L  
Sbjct: 83  SHRMLDEARRRLAPYAGRVDLRH 105


>gi|228993501|ref|ZP_04153410.1| hypothetical protein bpmyx0001_42280 [Bacillus pseudomycoides DSM
           12442]
 gi|228766216|gb|EEM14861.1| hypothetical protein bpmyx0001_42280 [Bacillus pseudomycoides DSM
           12442]
          Length = 177

 Score = 43.6 bits (102), Expect = 0.046,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 10/90 (11%)

Query: 33  NPAPGKVILDATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFS 86
               G   +DAT G  G+              V   D    A+      +++    E+  
Sbjct: 4   AVKEGDYAVDATLGN-GHDTCFLAEIVGEHGKVFGFDIQRKAIESSATHLKERGLEERTV 62

Query: 87  LFQATFSQLQDYVPDK---GVDGVVFDLGV 113
           L   +   L   +P++    V G +F+LG 
Sbjct: 63  LVHDSHDTLLSVLPEEAKGKVTGAIFNLGY 92


>gi|255065187|ref|ZP_05317042.1| putative rRNA methylase [Neisseria sicca ATCC 29256]
 gi|255050608|gb|EET46072.1| putative rRNA methylase [Neisseria sicca ATCC 29256]
          Length = 189

 Score = 43.6 bits (102), Expect = 0.047,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 11/95 (11%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMRD 80
           LL++ +      P    LD T G G  +    +    G  V A D    A++  +  + +
Sbjct: 13  LLKQAL-----KPDARALDGTAGNGNDTLMLARSVGRGGKVWAFDIQEQALANTRMRLEE 67

Query: 81  YK--EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
               ++  L       L  ++ +  +D  VF+ G 
Sbjct: 68  AGMADRVELILDGHENLATHIREP-LDAAVFNFGW 101


>gi|262283226|ref|ZP_06060993.1| methyltransferase [Streptococcus sp. 2_1_36FAA]
 gi|262261478|gb|EEY80177.1| methyltransferase [Streptococcus sp. 2_1_36FAA]
          Length = 184

 Score = 43.6 bits (102), Expect = 0.047,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 35/92 (38%), Gaps = 6/92 (6%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82
           +    +A +      +++DAT G  G+ +    ++   V A D    AV   ++ + +  
Sbjct: 7   MAHAFLAEVVTKED-IVVDATMGN-GHDTLFLAQLAKQVYAFDIQEQAVEKTRQRLAEAG 64

Query: 83  -EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
            +   L  A    L  Y         +F+LG 
Sbjct: 65  LDNAQLILAGHETLDQYTDHFK--AAIFNLGY 94


>gi|268316279|ref|YP_003289998.1| Methyltransferase type 11 [Rhodothermus marinus DSM 4252]
 gi|262333813|gb|ACY47610.1| Methyltransferase type 11 [Rhodothermus marinus DSM 4252]
          Length = 246

 Score = 43.6 bits (102), Expect = 0.048,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 10/89 (11%)

Query: 26  EKVIALLN----PAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81
           E+V+ L+     PAPG  ILD   G G ++R   + G  V  +D    A+   +E     
Sbjct: 26  EQVVDLIERLVRPAPGSEILDVGCGRGRHARVLARRGYRVTGIDVAERALQIARERAEAE 85

Query: 82  KEQFSLFQATF--SQLQDYVPDKGVDGVV 108
                L    F    +++ +  +  DGVV
Sbjct: 86  G----LHHVRFLRHDMREPLCRECFDGVV 110


>gi|322372189|ref|ZP_08046730.1| hypothetical protein ZOD2009_21857 [Haladaptatus paucihalophilus
           DX253]
 gi|320548198|gb|EFW89871.1| hypothetical protein ZOD2009_21857 [Haladaptatus paucihalophilus
           DX253]
          Length = 237

 Score = 43.2 bits (101), Expect = 0.049,   Method: Composition-based stats.
 Identities = 41/189 (21%), Positives = 68/189 (35%), Gaps = 36/189 (19%)

Query: 37  GKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ 96
           GK ILDA  G G Y+      G++V+A+D     V   +E +    ++ ++ QA   +  
Sbjct: 46  GKRILDAGCGCGRYTEWLLDNGADVVAVDTSENMVEQTRERV---GDRATVHQADLERPL 102

Query: 97  DYVPDKGVDGVVFDLGVSSMQIDCG-------DR-----GF-SFQKSGPLDMRMSCSGIS 143
           D   D   DG+V   G+S   ++          R     GF +F    PLD  +      
Sbjct: 103 DIADDGTFDGIV--SGLSLHYVEDWRQPFTEFSRLLRPGGFLAFSAHHPLDDYL------ 154

Query: 144 ASDVVNQANVKDLTRILGILG----EEKQASRIAHAIVKRRQSAPF-QTTQDLSSLIQKT 198
           A DV       +  R+         +     R    I+      P  +T   L  L++  
Sbjct: 155 AYDV--NYFETERERMTWTASGTDIDVPFYHRPFSEII-----NPLVETGFQLDELVEPI 207

Query: 199 VYFSKNNRI 207
              +   + 
Sbjct: 208 PTATFEEKK 216


>gi|269125397|ref|YP_003298767.1| type 11 methyltransferase [Thermomonospora curvata DSM 43183]
 gi|268310355|gb|ACY96729.1| Methyltransferase type 11 [Thermomonospora curvata DSM 43183]
          Length = 337

 Score = 43.2 bits (101), Expect = 0.049,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 26/49 (53%)

Query: 29 IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77
          + LL+P P + I+D   G G +S +  + G+ V+ +D  P  ++    T
Sbjct: 23 VDLLDPQPDERIIDLGCGTGVFSAAIAERGAQVLGIDGSPEMIAQAAAT 71


>gi|157372746|ref|YP_001480735.1| 16S rRNA methyltransferase B [Serratia proteamaculans 568]
 gi|224493268|sp|A8GKG7|RSMB_SERP5 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|157324510|gb|ABV43607.1| sun protein [Serratia proteamaculans 568]
          Length = 429

 Score = 43.2 bits (101), Expect = 0.049,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85
            + LL+P  G+ ILD     GG +    +     +V+A+D D   +   +E ++  +   
Sbjct: 238 CVDLLDPQDGEQILDLCAAPGGKTTHILEAAPKAHVMAVDIDEQRLKRVKENLQRLRLHA 297

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            + Q      Q +  DK  D ++ D   S
Sbjct: 298 EVKQGDGRTPQQWCGDKQFDRILLDAPCS 326


>gi|163854093|ref|YP_001642136.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Methylobacterium extorquens PA1]
 gi|218533038|ref|YP_002423854.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Methylobacterium chloromethanicum CM4]
 gi|163665698|gb|ABY33065.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Methylobacterium extorquens PA1]
 gi|218525341|gb|ACK85926.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Methylobacterium chloromethanicum CM4]
          Length = 216

 Score = 43.2 bits (101), Expect = 0.050,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 7/71 (9%)

Query: 22  PVLLEKVIALLNPAPGKVILDATFGAG-GYSRSFCK-MGSNVIALDRDPFAVSCGQETMR 79
           P+LL ++I  L   PG   LD   G G GY  +  + +G+ V+AL+ DP  +   +E + 
Sbjct: 68  PMLLARLIQALKIRPGTRALD--VGTGYGYGAAMLRQLGAEVVALESDPDLIGAARERL- 124

Query: 80  DYKEQFSLFQA 90
              +  +L Q 
Sbjct: 125 --GDTVNLVQG 133


>gi|149374703|ref|ZP_01892477.1| RNA methyltransferase, TrmA family protein [Marinobacter algicola
           DG893]
 gi|149361406|gb|EDM49856.1| RNA methyltransferase, TrmA family protein [Marinobacter algicola
           DG893]
          Length = 429

 Score = 43.2 bits (101), Expect = 0.050,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 38/99 (38%), Gaps = 7/99 (7%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82
           ++ + +  L+  PG+ +LD   G G ++    +    V+ ++ D   V  G+E       
Sbjct: 269 MVHRAVEWLDIQPGERVLDLFCGLGNFTLPLARRAGQVVGVEGDDAMVVRGRENAELNGL 328

Query: 83  EQFSLF----QATFSQLQDYVPDKGVDGVVFDLGVSSMQ 117
              +       A F+        +G D ++ D   S  Q
Sbjct: 329 SNVAFHGADLHADFT--AQPWAAEGFDKILIDPPRSGAQ 365


>gi|282917021|ref|ZP_06324779.1| mraW; SAM-dependent methyltransferase [Staphylococcus aureus subsp.
           aureus D139]
 gi|283770839|ref|ZP_06343731.1| mraW SAM-dependent methyltransferase [Staphylococcus aureus subsp.
           aureus H19]
 gi|282319508|gb|EFB49860.1| mraW; SAM-dependent methyltransferase [Staphylococcus aureus subsp.
           aureus D139]
 gi|283460986|gb|EFC08076.1| mraW SAM-dependent methyltransferase [Staphylococcus aureus subsp.
           aureus H19]
          Length = 187

 Score = 43.2 bits (101), Expect = 0.051,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 37/85 (43%), Gaps = 6/85 (7%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91
             P  +++DAT G G  +    +     +V   D    A+   ++ ++D+    SL +  
Sbjct: 18  ITPESIVVDATCGNGNDTLFLAEQVPEGHVYGFDIQDLALENTRDKVKDF-NHVSLIKDG 76

Query: 92  FSQLQDYVPD---KGVDGVVFDLGV 113
              ++ ++ D     +D  +F+LG 
Sbjct: 77  HENIEHHINDAHKGHIDAAIFNLGY 101


>gi|312863858|ref|ZP_07724096.1| putative rRNA methylase [Streptococcus vestibularis F0396]
 gi|311101394|gb|EFQ59599.1| putative rRNA methylase [Streptococcus vestibularis F0396]
          Length = 182

 Score = 43.2 bits (101), Expect = 0.051,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 7/90 (7%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-E 83
           L +V+         V +DAT G G  +     +   V A D    A+   ++ + D + E
Sbjct: 13  LAEVLD-----DESVAVDATMGNGNDTAFLAGLAKKVYAFDVQEQALEKTRQRLSDLEIE 67

Query: 84  QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
              L       L  YV +  +   +F+LG 
Sbjct: 68  NAQLILDGHENLDRYVTEP-IRAAIFNLGY 96


>gi|49484008|ref|YP_041232.1| hypothetical protein SAR1846 [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257425874|ref|ZP_05602298.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428541|ref|ZP_05604939.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257431175|ref|ZP_05607552.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257433856|ref|ZP_05610214.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257436773|ref|ZP_05612817.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|282904336|ref|ZP_06312224.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus C160]
 gi|282906161|ref|ZP_06314016.1| mraW; SAM-dependent methyltransferase [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282909078|ref|ZP_06316896.1| SAM-dependent methyltransferase [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282914555|ref|ZP_06322341.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus M899]
 gi|282919523|ref|ZP_06327258.1| mraW; SAM-dependent methyltransferase [Staphylococcus aureus subsp.
           aureus C427]
 gi|282924901|ref|ZP_06332567.1| mraW; SAM-dependent methyltransferase [Staphylococcus aureus subsp.
           aureus C101]
 gi|283958514|ref|ZP_06375965.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|293503633|ref|ZP_06667480.1| mraW; SAM-dependent methyltransferase [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293510649|ref|ZP_06669354.1| SAM-dependent methyltransferase [Staphylococcus aureus subsp.
           aureus M809]
 gi|293537190|ref|ZP_06671870.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus M1015]
 gi|295428337|ref|ZP_06820966.1| mraW [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297590699|ref|ZP_06949337.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus MN8]
 gi|49242137|emb|CAG40837.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257271568|gb|EEV03714.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257275382|gb|EEV06869.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257278123|gb|EEV08771.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257281949|gb|EEV12086.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257284124|gb|EEV14247.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|282313267|gb|EFB43663.1| mraW; SAM-dependent methyltransferase [Staphylococcus aureus subsp.
           aureus C101]
 gi|282317333|gb|EFB47707.1| mraW; SAM-dependent methyltransferase [Staphylococcus aureus subsp.
           aureus C427]
 gi|282321736|gb|EFB52061.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus M899]
 gi|282327342|gb|EFB57637.1| SAM-dependent methyltransferase [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282331453|gb|EFB60967.1| mraW; SAM-dependent methyltransferase [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282595954|gb|EFC00918.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus C160]
 gi|283790663|gb|EFC29480.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|290920035|gb|EFD97103.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus M1015]
 gi|291095299|gb|EFE25564.1| mraW; SAM-dependent methyltransferase [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291466540|gb|EFF09061.1| SAM-dependent methyltransferase [Staphylococcus aureus subsp.
           aureus M809]
 gi|295127737|gb|EFG57374.1| mraW [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297575585|gb|EFH94301.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus MN8]
 gi|315195675|gb|EFU26062.1| hypothetical protein CGSSa00_08420 [Staphylococcus aureus subsp.
           aureus CGS00]
          Length = 187

 Score = 43.2 bits (101), Expect = 0.051,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 37/85 (43%), Gaps = 6/85 (7%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91
             P  +++DAT G G  +    +     +V   D    A+   ++ ++D+    SL +  
Sbjct: 18  ITPESIVVDATCGNGNDTLFLAEQVPEGHVYGFDIQDLALENTRDKVKDF-NHVSLVKDG 76

Query: 92  FSQLQDYVPD---KGVDGVVFDLGV 113
              ++ ++ D     +D  +F+LG 
Sbjct: 77  HENIEHHINDAHKGHIDAAIFNLGY 101


>gi|330831512|ref|YP_004394464.1| ribosomal RNA small subunit methyltransferase B [Aeromonas veronii
           B565]
 gi|328806648|gb|AEB51847.1| Ribosomal RNA small subunit methyltransferase B [Aeromonas veronii
           B565]
          Length = 430

 Score = 43.2 bits (101), Expect = 0.052,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 34/85 (40%), Gaps = 3/85 (3%)

Query: 33  NPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCGQETMRDYKEQFSLFQ 89
           +P PG+ +LDA    GG +    +    +   +A+D D   +   QE +        +  
Sbjct: 240 DPQPGEWVLDACAAPGGKTAHLLERQPKLAGVVAVDADENRLKRVQENLDRIGLTAKVIH 299

Query: 90  ATFSQLQDYVPDKGVDGVVFDLGVS 114
              +  + + P+   D ++ D   S
Sbjct: 300 GDAAAPEQWWPEGQFDRILLDAPCS 324


>gi|326664911|ref|XP_003197913.1| PREDICTED: trimethylguanosine synthase-like [Danio rerio]
          Length = 809

 Score = 43.2 bits (101), Expect = 0.052,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 38  KVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQL 95
           ++I+DA  G GG +  F   G  VI +D DP  ++  Q     Y   ++    Q  F QL
Sbjct: 645 ELIIDAFCGVGGNAIQFALTGKRVIGIDIDPVRLALAQHNAAVYGVEQRIDFLQGDFLQL 704

Query: 96  QDYVPDKGV 104
             ++    V
Sbjct: 705 APHLRGDMV 713


>gi|322516162|ref|ZP_08069095.1| rRNA methylase [Streptococcus vestibularis ATCC 49124]
 gi|322125338|gb|EFX96693.1| rRNA methylase [Streptococcus vestibularis ATCC 49124]
          Length = 182

 Score = 43.2 bits (101), Expect = 0.052,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 7/90 (7%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-E 83
           L +V+         + +DAT G G  +     +   + A D    A+   ++ + D + E
Sbjct: 13  LAEVLD-----DESIAVDATMGNGNDTAFLAGLAKKIYAFDVQEQALEKTRQRLSDLEIE 67

Query: 84  QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
              L       L  YV +  +   +F+LG 
Sbjct: 68  NAQLILDGHENLDRYVTEP-IRAAIFNLGY 96


>gi|226192654|pdb|3EGI|A Chain A, Methyltransferase Domain Of Human Trimethylguanosine
           Synthase Tgs1 Bound To M7gpppa (Inactive Form)
 gi|226192655|pdb|3EGI|B Chain B, Methyltransferase Domain Of Human Trimethylguanosine
           Synthase Tgs1 Bound To M7gpppa (Inactive Form)
 gi|226192656|pdb|3EGI|C Chain C, Methyltransferase Domain Of Human Trimethylguanosine
           Synthase Tgs1 Bound To M7gpppa (Inactive Form)
 gi|226192657|pdb|3EGI|D Chain D, Methyltransferase Domain Of Human Trimethylguanosine
           Synthase Tgs1 Bound To M7gpppa (Inactive Form)
          Length = 206

 Score = 43.2 bits (101), Expect = 0.052,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 2/68 (2%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96
           V++DA  G GG +  F   G  VIA+D DP  ++  +     Y   ++       F  L 
Sbjct: 46  VVVDAFCGVGGNTIQFALTGXRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA 105

Query: 97  DYVPDKGV 104
            ++    V
Sbjct: 106 SFLKADVV 113


>gi|220673234|emb|CAX12680.1| novel protein similar to vertebrate trimethylguanosine synthase
           homolog (S. cerevisiae) (TGS1) [Danio rerio]
          Length = 180

 Score = 43.2 bits (101), Expect = 0.052,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 38  KVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQL 95
           ++I+DA  G GG +  F   G  VI +D DP  ++  Q     Y   ++    Q  F QL
Sbjct: 25  ELIIDAFCGVGGNAIQFALTGKRVIGIDIDPVRLALAQHNAAVYGVEQRIDFLQGDFLQL 84

Query: 96  QDYVPDKGV 104
             ++    V
Sbjct: 85  APHLRGDMV 93


>gi|254443830|ref|ZP_05057306.1| NOL1/NOP2/sun family protein [Verrucomicrobiae bacterium DG1235]
 gi|198258138|gb|EDY82446.1| NOL1/NOP2/sun family protein [Verrucomicrobiae bacterium DG1235]
          Length = 419

 Score = 43.2 bits (101), Expect = 0.052,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 32/90 (35%), Gaps = 9/90 (10%)

Query: 29  IALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDYKEQF 85
           + LL   P    LDA  GAGG +    K       V A D  P A+   Q  ++    + 
Sbjct: 228 LQLLKDRPTGNWLDACAGAGGKTLQLAKALQPSGKVAAYDPRPSAIRELQSRLKRSGLR- 286

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVSS 115
                  S L     +   DGV+ D   S 
Sbjct: 287 -----NASVLDRRPTEGAYDGVLVDAPCSG 311


>gi|323442030|gb|EGA99666.1| hypothetical protein SAO46_2058 [Staphylococcus aureus O46]
          Length = 187

 Score = 43.2 bits (101), Expect = 0.052,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 37/85 (43%), Gaps = 6/85 (7%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91
             P  +++DAT G G  +    +     +V   D    A+   ++ ++D+    SL +  
Sbjct: 18  ITPESIVVDATCGNGNDTLFLAEQVPEGHVYGFDIQDLALENTRDKVKDF-NHVSLIKDG 76

Query: 92  FSQLQDYVPD---KGVDGVVFDLGV 113
              ++ ++ D     +D  +F+LG 
Sbjct: 77  HENIEHHINDAHKGHIDAAIFNLGY 101


>gi|302786828|ref|XP_002975185.1| hypothetical protein SELMODRAFT_57713 [Selaginella moellendorffii]
 gi|300157344|gb|EFJ23970.1| hypothetical protein SELMODRAFT_57713 [Selaginella moellendorffii]
          Length = 184

 Score = 43.2 bits (101), Expect = 0.052,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 35/99 (35%), Gaps = 12/99 (12%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKM------GSNVIALDRDPFAVSCGQETMRDY-----K 82
             PG  ++D T G G  +    ++         V   D    A+      +  +     +
Sbjct: 10  VRPGDTVVDTTCGNGIDTLLLARLVSPGSLLGRVYGFDIQKEALERTSLLLEQHLTPEQR 69

Query: 83  EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCG 121
            +  LFQ   S++ + + D     VV++LG      D  
Sbjct: 70  NRVELFQDCHSKMGEVLKDVRARLVVYNLGYL-PHGDKE 107


>gi|262273082|ref|ZP_06050899.1| ribosomal RNA small subunit methyltransferase B [Grimontia hollisae
           CIP 101886]
 gi|262222838|gb|EEY74146.1| ribosomal RNA small subunit methyltransferase B [Grimontia hollisae
           CIP 101886]
          Length = 426

 Score = 43.2 bits (101), Expect = 0.052,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 37/89 (41%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85
            +  L P  G++ILD     GG +    +     NV+A+D D   ++  ++ ++  K + 
Sbjct: 235 AVDYLKPQAGELILDCCAAPGGKTCHILEHEPSANVVAMDVDAARLTRVEDNVKRLKLKA 294

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            +         ++   +  D ++ D   S
Sbjct: 295 RVICGDARTPDEWWQGEQFDRILLDAPCS 323


>gi|169342633|ref|ZP_02863677.1| conserved hypothetical protein [Clostridium perfringens C str.
           JGS1495]
 gi|169299275|gb|EDS81344.1| conserved hypothetical protein [Clostridium perfringens C str.
           JGS1495]
          Length = 183

 Score = 43.2 bits (101), Expect = 0.052,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 5/76 (6%)

Query: 39  VILDATFGAGGYSRSFC-KMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD 97
           + +DAT G  G+   F  ++   V A D    AV+  +      KE   +   +    + 
Sbjct: 25  IAIDATLGN-GHDCDFLSELFKKVYAFDIQEEAVNSYK---SKNKENVEVILDSHENFKT 80

Query: 98  YVPDKGVDGVVFDLGV 113
           Y+ ++ VD +V++LG 
Sbjct: 81  YIKEENVDCIVYNLGY 96


>gi|323439583|gb|EGA97303.1| hypothetical protein SAO11_1596 [Staphylococcus aureus O11]
          Length = 187

 Score = 43.2 bits (101), Expect = 0.053,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 37/85 (43%), Gaps = 6/85 (7%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91
             P  +++DAT G G  +    +     +V   D    A+   ++ ++D+    SL +  
Sbjct: 18  ITPESIVVDATCGNGNDTLFLAEQVPEGHVYGFDIQDLALENTRDKVKDF-NHVSLIKDG 76

Query: 92  FSQLQDYVPD---KGVDGVVFDLGV 113
              ++ ++ D     +D  +F+LG 
Sbjct: 77  HENIEHHINDAHKGHIDAAIFNLGY 101


>gi|302870918|ref|YP_003839554.1| short-chain dehydrogenase/reductase SDR [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302573777|gb|ADL41568.1| short-chain dehydrogenase/reductase SDR [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 264

 Score = 43.2 bits (101), Expect = 0.053,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 76/231 (32%), Gaps = 48/231 (20%)

Query: 51  SRSFCKMGSNVIALDRDPFAVSCGQETMRD-YKEQFSLFQATFSQLQDYVPDKGVDGVVF 109
           + SF + G+ V A+D+D  A+    +   D +K++ + F+   +  ++        G V 
Sbjct: 31  ALSFLENGAKVFAIDKDREAIEDASQDFFDKFKDRITFFECDLADAKEIELVCQKIGDVA 90

Query: 110 DLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQ- 168
                                G +D+ ++ +GI ++  + + +V +   ++ +       
Sbjct: 91  ---------------------GKIDVLVNNAGIGSTKWIEERSVDEWDEVINVNLRAPYL 129

Query: 169 -ASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRI----HPATRSFQALRIFVNN 223
               +   + +        +T+ L S      Y +    I    H    S  + +I VN 
Sbjct: 130 MVKFLLPYLKEGASIVNIASTRALMSEPNTEPYSASKGGILALTHSLAISLSSRKIRVNA 189

Query: 224 -EIEELAQG------------LRSAEKALKAGGLLIV-------VSFHSLE 254
                +               LR  +      G + V       + F S E
Sbjct: 190 ISPGWIETSRYKKRKYRREPELREVDHLQHPAGRVGVPEDIANAILFLSSE 240


>gi|291522365|emb|CBK80658.1| Putative rRNA methylase [Coprococcus catus GD/7]
          Length = 195

 Score = 43.2 bits (101), Expect = 0.053,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 8/87 (9%)

Query: 33  NPAPGKVILDATFGAGGY-SRSFCKMGSN---VIALDRDPFAVSCGQETM--RDYKEQFS 86
              PG  + D T G  G+ +   C++  +   V + D  P A+S  +  +          
Sbjct: 20  QIRPGDTVCDCTMGN-GHDTAYMCRLTGDTGTVYSFDIQPEALSRTEALLTEEHLLTPAR 78

Query: 87  LFQATFSQLQDYVPDKGVDGVVFDLGV 113
           L   + S L+ Y+ D  +   VF+LG 
Sbjct: 79  LILDSHSHLKQYI-DHPIRFFVFNLGY 104


>gi|309791546|ref|ZP_07686045.1| methyltransferase type 11 [Oscillochloris trichoides DG6]
 gi|308226406|gb|EFO80135.1| methyltransferase type 11 [Oscillochloris trichoides DG6]
          Length = 259

 Score = 43.2 bits (101), Expect = 0.054,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 25/69 (36%)

Query: 30  ALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQ 89
             L+    + ILD   G G +S    + G  VI LD  P  ++  +    +     +  Q
Sbjct: 38  QALSLRGVETILDLACGGGRHSIELAQRGLTVIGLDASPRVLAHARSRASELDLNATFVQ 97

Query: 90  ATFSQLQDY 98
                L D 
Sbjct: 98  GDMRHLTDV 106


>gi|120555154|ref|YP_959505.1| 23S rRNA 5-methyluridine methyltransferase [Marinobacter aquaeolei
           VT8]
 gi|143581341|sp|A1U2U9|RUMA_MARAV RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|120325003|gb|ABM19318.1| 23S rRNA m(5)U-1939 methyltransferase [Marinobacter aquaeolei VT8]
          Length = 449

 Score = 43.2 bits (101), Expect = 0.054,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 37/92 (40%), Gaps = 7/92 (7%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR-DYK 82
           ++ + +  L+  PG+ +LD   G G ++    + G  V+ ++ D   V  G+E  R +  
Sbjct: 289 MVHRAVEWLDVQPGERVLDLFCGLGNFTLPLARKGGQVVGVEGDDAMVVRGRENARLNDL 348

Query: 83  EQFSLF----QATFSQLQDYVPDKGVDGVVFD 110
                        F+        +G D ++ D
Sbjct: 349 SNVEFHGADLHGDFT--GQSWAKEGFDKILID 378


>gi|325202454|gb|ADY97908.1| putative rRNA methylase [Neisseria meningitidis M01-240149]
 gi|325207794|gb|ADZ03246.1| putative rRNA methylase [Neisseria meningitidis NZ-05/33]
          Length = 188

 Score = 43.2 bits (101), Expect = 0.055,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 7/83 (8%)

Query: 36  PGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQA 90
            G   LD T G  G+   F          V A D  P A++  +  +++           
Sbjct: 20  EGGNALDGTAGN-GHDTLFLAQTAGIRGKVWAFDIQPQALNNTRCRLQEAGYSNVRFILD 78

Query: 91  TFSQLQDYVPDKGVDGVVFDLGV 113
               L+ Y+P   +D  +F+ G 
Sbjct: 79  GHENLKQYIPKP-LDAAIFNFGW 100


>gi|121634545|ref|YP_974790.1| hypothetical protein NMC0701 [Neisseria meningitidis FAM18]
 gi|120866251|emb|CAM09992.1| hypothetical protein NMC0701 [Neisseria meningitidis FAM18]
 gi|308388937|gb|ADO31257.1| hypothetical protein NMBB_0845 [Neisseria meningitidis alpha710]
          Length = 188

 Score = 43.2 bits (101), Expect = 0.055,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 7/83 (8%)

Query: 36  PGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQA 90
            G   LD T G  G+   F          V A D  P A++  +  +++           
Sbjct: 20  EGGNALDGTAGN-GHDTLFLAQTAGIRGKVWAFDIQPQALNNTRCRLQEAGYSNVRFILD 78

Query: 91  TFSQLQDYVPDKGVDGVVFDLGV 113
               L+ Y+P   +D  +F+ G 
Sbjct: 79  GHENLKQYIPKP-LDAAIFNFGW 100


>gi|323702788|ref|ZP_08114448.1| putative rRNA methylase [Desulfotomaculum nigrificans DSM 574]
 gi|323532305|gb|EGB22184.1| putative rRNA methylase [Desulfotomaculum nigrificans DSM 574]
          Length = 192

 Score = 43.2 bits (101), Expect = 0.055,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 9/86 (10%)

Query: 35  APGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK---EQFSL 87
             G   +D T G  G+              V A D    A++  +E +       E+  L
Sbjct: 20  QAGDTAVDGTMGN-GHDTLILAQLVGPTGKVWAFDIQAQALANTRERLATAGVLDERIEL 78

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGV 113
            Q     ++ YV    +   +++LG 
Sbjct: 79  IQDGHEYIKKYV-SHPIQAAIYNLGY 103


>gi|126321364|ref|XP_001379655.1| PREDICTED: similar to hepatocellular carcinoma-associated antigen
           137 [Monodelphis domestica]
          Length = 871

 Score = 43.2 bits (101), Expect = 0.055,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 58/174 (33%), Gaps = 29/174 (16%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96
           +I+DA  G GG +  F   G  VIA+D DP  +         Y   ++       F  L 
Sbjct: 699 IIVDAFCGVGGNAIQFALTGKRVIAIDIDPAKIDLAHNNAEVYGVADKIEFICGDFMLLA 758

Query: 97  DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR--MSCSGISASDVVNQANVK 154
             +          D+   S      D    +  +   D+R  MS  G      + + +  
Sbjct: 759 SDLK--------ADVVFLSPPWGGPD----YATAETFDIRTMMSPDGFE----IFRLSQM 802

Query: 155 DLTRILGILGEEKQASRIAH--------AIVKRRQSAPFQT-TQDLSSLIQKTV 199
               I+  L       ++A          I +   +   +T T     LI++TV
Sbjct: 803 ITKNIVYFLPRNADIDQVASLAGPGGQVEIEQNFLNNKLKTITAYFGDLIRRTV 856


>gi|226312973|ref|YP_002772867.1| hypothetical protein BBR47_33860 [Brevibacillus brevis NBRC 100599]
 gi|226095921|dbj|BAH44363.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 186

 Score = 43.2 bits (101), Expect = 0.057,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 7/82 (8%)

Query: 37  GKVILDATFGAGGYS---RSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQAT 91
           G+ ++DAT G G  +       +    VIA D  P A+   +E +       +  +  A+
Sbjct: 20  GETVVDATMGNGNDTLFLAQLVQEEGKVIAFDIQPQAIEKTRERLEREGLANRVEMKLAS 79

Query: 92  FSQLQDYVPDKGVDGVVFDLGV 113
             ++     +     ++F+LG 
Sbjct: 80  HEEIDKL--EILAAAIMFNLGY 99


>gi|218283098|ref|ZP_03489188.1| hypothetical protein EUBIFOR_01774 [Eubacterium biforme DSM 3989]
 gi|218216119|gb|EEC89657.1| hypothetical protein EUBIFOR_01774 [Eubacterium biforme DSM 3989]
          Length = 175

 Score = 43.2 bits (101), Expect = 0.057,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 44/115 (38%), Gaps = 18/115 (15%)

Query: 6   CKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIAL 64
            K+M    H  +    PVL ++           + +DAT G G  +  F     + V   
Sbjct: 1   MKSMVDLSHEFL---KPVLHKQA----------ICVDATLGQGKDTDFFLSQNVHKVYGF 47

Query: 65  DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQID 119
           +         +E + +   +   F      +++Y+ ++ VD ++F+ G    Q D
Sbjct: 48  EIQRDVFESTKERLGNQ--RTCFFHVGHEHMEEYIHEE-VDAIIFNFGY-FPQGD 98


>gi|310640916|ref|YP_003945674.1| rRNA methylase [Paenibacillus polymyxa SC2]
 gi|309245866|gb|ADO55433.1| Putative rRNA methylase [Paenibacillus polymyxa SC2]
          Length = 193

 Score = 43.2 bits (101), Expect = 0.058,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 40/112 (35%), Gaps = 13/112 (11%)

Query: 22  PVL--LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQE 76
            VL    +++A     PG   +DAT G G  +    K       V   D    A+   + 
Sbjct: 5   SVLSYAHQLVAA-RVQPGDTAVDATVGTGADTLFLAKAAGKRGRVYGFDIQQAALDYARR 63

Query: 77  TMRDYKE----QFSLFQATFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCG 121
            + +       + SL       +++ VPD     V  V+F+LG    +    
Sbjct: 64  RLEEDTSPSLAEVSLLLQGHEHMREVVPDLLHGKVAAVMFNLGYLPSEGADP 115


>gi|268593572|ref|ZP_06127793.1| ribosomal RNA small subunit methyltransferase B [Providencia
           rettgeri DSM 1131]
 gi|291310849|gb|EFE51302.1| ribosomal RNA small subunit methyltransferase B [Providencia
           rettgeri DSM 1131]
          Length = 427

 Score = 43.2 bits (101), Expect = 0.058,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQF 85
              LL P  G+ ILD     GG +    ++     VIA+D D + +   +E +   K+  
Sbjct: 238 CAELLEPQNGESILDLCAAPGGKTTHILELAPRANVIAVDIDEYRLKRVKENLIRLKQHA 297

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            + Q   +Q + +  D+  D ++ D   S
Sbjct: 298 VVIQGDGTQPEKWAKDQQFDRILLDAPCS 326


>gi|15924753|ref|NP_372287.1| hypothetical protein SAV1763 [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|15927338|ref|NP_374871.1| hypothetical protein SA1582 [Staphylococcus aureus subsp. aureus
           N315]
 gi|21283433|ref|NP_646521.1| hypothetical protein MW1704 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49486586|ref|YP_043807.1| hypothetical protein SAS1687 [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57652059|ref|YP_186644.1| hypothetical protein SACOL1811 [Staphylococcus aureus subsp. aureus
           COL]
 gi|87161375|ref|YP_494401.1| hypothetical protein SAUSA300_1707 [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|88195575|ref|YP_500381.1| hypothetical protein SAOUHSC_01878 [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|148268239|ref|YP_001247182.1| hypothetical protein SaurJH9_1816 [Staphylococcus aureus subsp.
           aureus JH9]
 gi|150394307|ref|YP_001316982.1| hypothetical protein SaurJH1_1851 [Staphylococcus aureus subsp.
           aureus JH1]
 gi|151221866|ref|YP_001332688.1| hypothetical protein NWMN_1654 [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|156980080|ref|YP_001442339.1| hypothetical protein SAHV_1749 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|161509979|ref|YP_001575638.1| hypothetical protein USA300HOU_1752 [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|221141483|ref|ZP_03565976.1| hypothetical protein SauraJ_07563 [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|253315864|ref|ZP_04839077.1| hypothetical protein SauraC_06907 [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|253732414|ref|ZP_04866579.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253734455|ref|ZP_04868620.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus TCH130]
 gi|255006549|ref|ZP_05145150.2| hypothetical protein SauraM_08770 [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257794144|ref|ZP_05643123.1| conserved hypothetical protein [Staphylococcus aureus A9781]
 gi|258415848|ref|ZP_05682119.1| conserved hypothetical protein [Staphylococcus aureus A9763]
 gi|258420677|ref|ZP_05683616.1| conserved hypothetical protein [Staphylococcus aureus A9719]
 gi|258443785|ref|ZP_05692124.1| conserved hypothetical protein [Staphylococcus aureus A8115]
 gi|258445996|ref|ZP_05694172.1| conserved hypothetical protein [Staphylococcus aureus A6300]
 gi|258448276|ref|ZP_05696403.1| conserved hypothetical protein [Staphylococcus aureus A6224]
 gi|258452312|ref|ZP_05700325.1| conserved hypothetical protein [Staphylococcus aureus A5948]
 gi|258454196|ref|ZP_05702167.1| conserved hypothetical protein [Staphylococcus aureus A5937]
 gi|262049070|ref|ZP_06021948.1| hypothetical protein SAD30_2275 [Staphylococcus aureus D30]
 gi|262053062|ref|ZP_06025235.1| hypothetical protein SA930_1119 [Staphylococcus aureus 930918-3]
 gi|269203399|ref|YP_003282668.1| hypothetical protein SAAV_1772 [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282893255|ref|ZP_06301489.1| mraW; SAM-dependent methyltransferase [Staphylococcus aureus A8117]
 gi|282925648|ref|ZP_06333297.1| mraW; SAM-dependent methyltransferase [Staphylococcus aureus A9765]
 gi|282927890|ref|ZP_06335501.1| mraW; SAM-dependent methyltransferase [Staphylococcus aureus
           A10102]
 gi|284024808|ref|ZP_06379206.1| hypothetical protein Saura13_09455 [Staphylococcus aureus subsp.
           aureus 132]
 gi|294849922|ref|ZP_06790661.1| mraW [Staphylococcus aureus A9754]
 gi|295406072|ref|ZP_06815880.1| mraW [Staphylococcus aureus A8819]
 gi|296276045|ref|ZP_06858552.1| hypothetical protein SauraMR_06837 [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297207524|ref|ZP_06923960.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297245003|ref|ZP_06928880.1| mraW [Staphylococcus aureus A8796]
 gi|300911608|ref|ZP_07129052.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus TCH70]
 gi|304380644|ref|ZP_07363315.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|13701557|dbj|BAB42850.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           N315]
 gi|14247535|dbj|BAB57925.1| similar to SAM-dependent methyltransferase [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|21204874|dbj|BAB95569.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49245029|emb|CAG43490.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57286245|gb|AAW38339.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           COL]
 gi|87127349|gb|ABD21863.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87203133|gb|ABD30943.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|147741308|gb|ABQ49606.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus JH9]
 gi|149946759|gb|ABR52695.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus JH1]
 gi|150374666|dbj|BAF67926.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|156722215|dbj|BAF78632.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|160368788|gb|ABX29759.1| hypothetical protein USA300HOU_1752 [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|253723804|gb|EES92533.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253727509|gb|EES96238.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus TCH130]
 gi|257788116|gb|EEV26456.1| conserved hypothetical protein [Staphylococcus aureus A9781]
 gi|257839441|gb|EEV63914.1| conserved hypothetical protein [Staphylococcus aureus A9763]
 gi|257843281|gb|EEV67691.1| conserved hypothetical protein [Staphylococcus aureus A9719]
 gi|257851191|gb|EEV75134.1| conserved hypothetical protein [Staphylococcus aureus A8115]
 gi|257855238|gb|EEV78177.1| conserved hypothetical protein [Staphylococcus aureus A6300]
 gi|257858515|gb|EEV81391.1| conserved hypothetical protein [Staphylococcus aureus A6224]
 gi|257860037|gb|EEV82872.1| conserved hypothetical protein [Staphylococcus aureus A5948]
 gi|257863648|gb|EEV86405.1| conserved hypothetical protein [Staphylococcus aureus A5937]
 gi|259159039|gb|EEW44110.1| hypothetical protein SA930_1119 [Staphylococcus aureus 930918-3]
 gi|259162887|gb|EEW47451.1| hypothetical protein SAD30_2275 [Staphylococcus aureus D30]
 gi|262075689|gb|ACY11662.1| hypothetical protein SAAV_1772 [Staphylococcus aureus subsp. aureus
           ED98]
 gi|269941239|emb|CBI49627.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282590400|gb|EFB95479.1| mraW; SAM-dependent methyltransferase [Staphylococcus aureus
           A10102]
 gi|282592428|gb|EFB97442.1| mraW; SAM-dependent methyltransferase [Staphylococcus aureus A9765]
 gi|282764573|gb|EFC04699.1| mraW; SAM-dependent methyltransferase [Staphylococcus aureus A8117]
 gi|285817443|gb|ADC37930.1| SAM-dependent methyltransferase, MraW methylase family
           [Staphylococcus aureus 04-02981]
 gi|294823261|gb|EFG39691.1| mraW [Staphylococcus aureus A9754]
 gi|294969069|gb|EFG45090.1| mraW [Staphylococcus aureus A8819]
 gi|296887860|gb|EFH26757.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297178083|gb|EFH37331.1| mraW [Staphylococcus aureus A8796]
 gi|298695029|gb|ADI98251.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           ED133]
 gi|300887029|gb|EFK82230.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus TCH70]
 gi|302333425|gb|ADL23618.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus
           JKD6159]
 gi|302751588|gb|ADL65765.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus str.
           JKD6008]
 gi|304340751|gb|EFM06680.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|312830139|emb|CBX34981.1| rRNA methylase family protein [Staphylococcus aureus subsp. aureus
           ECT-R 2]
 gi|315130599|gb|EFT86585.1| hypothetical protein CGSSa03_10160 [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|315197231|gb|EFU27570.1| hypothetical protein CGSSa01_01071 [Staphylococcus aureus subsp.
           aureus CGS01]
 gi|320140772|gb|EFW32623.1| rRNA methylase family protein [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320143789|gb|EFW35563.1| rRNA methylase family protein [Staphylococcus aureus subsp. aureus
           MRSA177]
 gi|329314437|gb|AEB88850.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus T0131]
 gi|329727003|gb|EGG63460.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus 21189]
 gi|329727361|gb|EGG63817.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus 21172]
 gi|329733230|gb|EGG69567.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus 21193]
          Length = 187

 Score = 43.2 bits (101), Expect = 0.059,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 37/85 (43%), Gaps = 6/85 (7%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91
             P  +++DAT G G  +    +     +V   D    A+   ++ ++D+    SL +  
Sbjct: 18  ITPESIVVDATCGNGNDTLFLAEQVPEGHVYGFDIQDLALENTRDKVKDF-NHVSLIKDG 76

Query: 92  FSQLQDYVPD---KGVDGVVFDLGV 113
              ++ ++ D     +D  +F+LG 
Sbjct: 77  HENIEHHINDAHKGHIDAAIFNLGY 101


>gi|326333188|ref|ZP_08199435.1| UbiE/COQ5 methyltransferase [Nocardioidaceae bacterium Broad-1]
 gi|325948832|gb|EGD40925.1| UbiE/COQ5 methyltransferase [Nocardioidaceae bacterium Broad-1]
          Length = 231

 Score = 43.2 bits (101), Expect = 0.059,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 41/109 (37%), Gaps = 15/109 (13%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDY 81
           L E+ + L     G+ +LD   G G  S +  +   G+ V   D D  A+          
Sbjct: 44  LHERTVELAGIRAGQTVLDVGCGTGNLSFAVLRAVPGAVVTGHDPDASALRLAARKAGRR 103

Query: 82  KEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSS---MQIDCGDR-GF 125
             + SL Q         +P+ G VD +     VSS     +D   R GF
Sbjct: 104 GVRLSLVQG---YADRLLPEDGSVDHI-----VSSLALHHVDDAGREGF 144


>gi|270013278|gb|EFA09726.1| hypothetical protein TcasGA2_TC011859 [Tribolium castaneum]
          Length = 425

 Score = 43.2 bits (101), Expect = 0.059,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 37/95 (38%), Gaps = 13/95 (13%)

Query: 28  VIALLNPAPGKVILDA--------TFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
              +L P P   ILD         T     +  +  K    ++A+D+ P  V+  ++   
Sbjct: 221 CTHVLAPCPNDTILDMCASPGNKTT-----HIAALLKNQGRLVAIDKTPTKVAQLRQRCE 275

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
           ++  +  + Q   ++L D    +  D ++ D   S
Sbjct: 276 NFGAKVEILQTDSTKLLDRFCYESFDKILLDAPCS 310


>gi|189241190|ref|XP_001810247.1| PREDICTED: similar to GA10764-PA [Tribolium castaneum]
          Length = 516

 Score = 43.2 bits (101), Expect = 0.059,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 37/95 (38%), Gaps = 13/95 (13%)

Query: 28  VIALLNPAPGKVILDA--------TFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
              +L P P   ILD         T     +  +  K    ++A+D+ P  V+  ++   
Sbjct: 312 CTHVLAPCPNDTILDMCASPGNKTT-----HIAALLKNQGRLVAIDKTPTKVAQLRQRCE 366

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
           ++  +  + Q   ++L D    +  D ++ D   S
Sbjct: 367 NFGAKVEILQTDSTKLLDRFCYESFDKILLDAPCS 401


>gi|308161050|gb|EFO63512.1| Met-10 protein [Giardia lamblia P15]
          Length = 430

 Score = 43.2 bits (101), Expect = 0.060,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 14/118 (11%)

Query: 14  HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAV 71
           H ++  H+              P  ++LD T G G ++    K  +  N+I  D +P A 
Sbjct: 224 HLSLAKHISQ---------VIRPNDLVLDGTCGIGPHALLLAKRFNFTNLICNDLNPDAY 274

Query: 72  SCGQE--TMRDYKEQFSLFQATFSQLQD-YVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126
              +E   M       + F    S L +  +P+K +  V+F L   S+ +    +GFS
Sbjct: 275 KSLKENINMNKVDHAITCFNEDVSSLLERLLPEKNLKAVIFSLPELSIDLLKAMKGFS 332


>gi|282889803|ref|ZP_06298342.1| hypothetical protein pah_c004o195 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500377|gb|EFB42657.1| hypothetical protein pah_c004o195 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 204

 Score = 43.2 bits (101), Expect = 0.060,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 13/91 (14%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKMG------SNVIALDRDPFAVSCGQETM-----RDYK 82
             PG  ++DAT G  G+                VI +D  P A++  +E +      +  
Sbjct: 23  VNPGDTVIDATCGN-GHDTLILAKLVLDSSSGCVIGMDVQPQAIAATREKLAKELSANQM 81

Query: 83  EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
           E+  L  A  S       +  V  +V++LG 
Sbjct: 82  ERLHLHCACHSIFP-IQTENSVQLIVYNLGY 111


>gi|258424175|ref|ZP_05687057.1| conserved hypothetical protein [Staphylococcus aureus A9635]
 gi|257845796|gb|EEV69828.1| conserved hypothetical protein [Staphylococcus aureus A9635]
          Length = 187

 Score = 43.2 bits (101), Expect = 0.060,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 37/85 (43%), Gaps = 6/85 (7%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91
             P  +++DAT G G  +    +     +V   D    A+   ++ ++D+    SL +  
Sbjct: 18  ITPESIVVDATCGNGNDTLFLAEQVPEGHVYGFDIQDLALENTRDKVKDF-NHVSLIKDG 76

Query: 92  FSQLQDYVPD---KGVDGVVFDLGV 113
              ++ ++ D     +D  +F+LG 
Sbjct: 77  HENIEHHINDAHKGHIDAAIFNLGY 101


>gi|238788880|ref|ZP_04632670.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
           frederiksenii ATCC 33641]
 gi|238722907|gb|EEQ14557.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
           frederiksenii ATCC 33641]
          Length = 429

 Score = 43.2 bits (101), Expect = 0.061,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85
            + LL+P  G+ ILD     GG +    +     +V+A+D D   ++  +E ++  K   
Sbjct: 238 CVDLLDPQNGEQILDLCAAPGGKTTHILEAAPKTHVLAVDIDEQRLNRVKENLQRLKLNA 297

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            +          +  D+  D ++ D   S
Sbjct: 298 VVRVGDGRTPDTWCGDQQFDRILLDAPCS 326


>gi|314936143|ref|ZP_07843490.1| putative rRNA methylase [Staphylococcus hominis subsp. hominis C80]
 gi|313654762|gb|EFS18507.1| putative rRNA methylase [Staphylococcus hominis subsp. hominis C80]
          Length = 186

 Score = 43.2 bits (101), Expect = 0.061,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 6/85 (7%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91
                +++DAT G G  +    +      V   D    A+   +E +  +K   +L    
Sbjct: 18  IQDDSIVIDATCGNGNDTLFLAEQVPNGKVFGFDIQKEAIEHTKEKIVSFKH-VTLIHDG 76

Query: 92  FSQLQDYVPDK---GVDGVVFDLGV 113
              + + +P      VD  +F+LG 
Sbjct: 77  HENILNDIPSDVIGNVDAAIFNLGY 101


>gi|312143433|ref|YP_003994879.1| Methyltransferase type 11 [Halanaerobium sp. 'sapolanicus']
 gi|311904084|gb|ADQ14525.1| Methyltransferase type 11 [Halanaerobium sp. 'sapolanicus']
          Length = 255

 Score = 43.2 bits (101), Expect = 0.061,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 6/90 (6%)

Query: 24  LLEKVIALL-NPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR--- 79
           LL++  + L N      +LD   G G Y+ +    G  VI +D D   ++  +       
Sbjct: 24  LLDQTFSYLKNDKKQTKLLDVGCGTGSYAVALAGKGYQVIGIDLDSEMIALAKNKQAGLS 83

Query: 80  --DYKEQFSLFQATFSQLQDYVPDKGVDGV 107
             + +++   F     +L+D       DG+
Sbjct: 84  QTEAEDRLDFFVLGMLELKDKFSQDTFDGI 113


>gi|261364723|ref|ZP_05977606.1| putative rRNA methylase [Neisseria mucosa ATCC 25996]
 gi|288567020|gb|EFC88580.1| putative rRNA methylase [Neisseria mucosa ATCC 25996]
          Length = 189

 Score = 43.2 bits (101), Expect = 0.061,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 11/95 (11%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRD 80
           LL++ +      P    LD T G G  +    +    G  V A D    A++  +  + +
Sbjct: 13  LLKQAL-----KPDARALDGTAGNGNDTLMLARSIGSGGKVWAFDVQEQALANTRMRLEE 67

Query: 81  YK--EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
               ++  L       L  ++ +  +D  VF+ G 
Sbjct: 68  AGMADRVELILDGHENLATHIREP-LDAAVFNFGW 101


>gi|260557274|ref|ZP_05829490.1| SAM-dependent methyltransferase [Acinetobacter baumannii ATCC
          19606]
 gi|260409380|gb|EEX02682.1| SAM-dependent methyltransferase [Acinetobacter baumannii ATCC
          19606]
          Length = 194

 Score = 43.2 bits (101), Expect = 0.063,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 29/77 (37%), Gaps = 3/77 (3%)

Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETM 78
           H P+L EK +      P  V +D   GAG  S      G NV A D    A     E  
Sbjct: 13 KHRPIL-EKALGYFPNLPL-VAIDCGCGAGNESAYLLSKGFNVHAFDISIDAQKVCTERF 70

Query: 79 RDYKEQFSLFQATFSQL 95
          +D   +F  +  +F   
Sbjct: 71 KD-DSKFIFYHESFEDF 86


>gi|260548967|ref|ZP_05823189.1| SAM-dependent methyltransferase [Acinetobacter sp. RUH2624]
 gi|260408135|gb|EEX01606.1| SAM-dependent methyltransferase [Acinetobacter sp. RUH2624]
          Length = 192

 Score = 43.2 bits (101), Expect = 0.063,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 29/77 (37%), Gaps = 3/77 (3%)

Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETM 78
           H P+L EK +      P  V +D   GAG  S      G NV A D    A     E  
Sbjct: 13 KHRPIL-EKALGYFPNLPL-VAIDCGCGAGNESAYLLSKGFNVHAFDISIDAQKVCTERF 70

Query: 79 RDYKEQFSLFQATFSQL 95
          +D   +F  +  +F   
Sbjct: 71 KD-DSKFIFYHESFEDF 86


>gi|126642775|ref|YP_001085759.1| SAM-dependent methyltransferase [Acinetobacter baumannii ATCC
          17978]
 gi|169632585|ref|YP_001706321.1| putative SAM-dependent methyltransferase [Acinetobacter baumannii
          SDF]
 gi|126388659|gb|ABO13157.1| SAM-dependent methyltransferase [Acinetobacter baumannii ATCC
          17978]
 gi|169151377|emb|CAP00101.1| conserved hypothetical protein; putative SAM-dependent
          methyltransferase [Acinetobacter baumannii]
          Length = 194

 Score = 43.2 bits (101), Expect = 0.063,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 29/77 (37%), Gaps = 3/77 (3%)

Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETM 78
           H P+L EK +      P  V +D   GAG  S      G NV A D    A     E  
Sbjct: 13 KHRPIL-EKALGYFPNLPL-VAIDCGCGAGNESAYLLSKGFNVHAFDISIDAQKVCTERF 70

Query: 79 RDYKEQFSLFQATFSQL 95
          +D   +F  +  +F   
Sbjct: 71 KD-DSKFIFYHESFEDF 86


>gi|257387329|ref|YP_003177102.1| methyltransferase type 11 [Halomicrobium mukohataei DSM 12286]
 gi|257169636|gb|ACV47395.1| Methyltransferase type 11 [Halomicrobium mukohataei DSM 12286]
          Length = 206

 Score = 43.2 bits (101), Expect = 0.064,   Method: Composition-based stats.
 Identities = 12/73 (16%), Positives = 25/73 (34%), Gaps = 1/73 (1%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83
           + ++ IA L+  P   +LD   G G  +    +   +V  LD+    +            
Sbjct: 33  MRDEAIAKLDIEPDDHVLDVGCGTGFATEGLLEATEHVYGLDQSAHQLEKAYAKFGKRGP 92

Query: 84  QFSLFQATFSQLQ 96
             +  +    +L 
Sbjct: 93  -VAFHRGDAERLP 104


>gi|329120638|ref|ZP_08249301.1| rRNA methyltransferase [Neisseria bacilliformis ATCC BAA-1200]
 gi|327460862|gb|EGF07196.1| rRNA methyltransferase [Neisseria bacilliformis ATCC BAA-1200]
          Length = 200

 Score = 42.9 bits (100), Expect = 0.065,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 8/85 (9%)

Query: 35  APGKVILDATFGAGGYSRSFCK----MGSNVIALDRDPFAVSCGQETM--RDYKEQFSLF 88
             G   LD T G  G+              V A D  P A++  ++ +      +Q  L 
Sbjct: 24  KSGGRALDGTAGN-GHDTLLLAWLAGEDGIVWAFDVQPQALANTKDRLKTAGADKQVRLI 82

Query: 89  QATFSQLQDYVPDKGVDGVVFDLGV 113
            A+ ++L DYV +  +D  +F+ G 
Sbjct: 83  CASHARLADYVAEP-LDAAMFNFGY 106


>gi|212632964|ref|YP_002309489.1| Fmu, rRNA SAM-dependent methyltransferase [Shewanella piezotolerans
           WP3]
 gi|212554448|gb|ACJ26902.1| Fmu, rRNA SAM-dependent methyltransferase [Shewanella piezotolerans
           WP3]
          Length = 428

 Score = 42.9 bits (100), Expect = 0.065,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 2/86 (2%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQFSLF 88
           LL P   +++LDA    GG +    ++  +  ++A+D D   +   Q+ +     +  L 
Sbjct: 237 LLAPQGDELVLDACAAPGGKTCHLLELAPDIKLVAVDFDAKRLERVQQNLDRLSLEAELI 296

Query: 89  QATFSQLQDYVPDKGVDGVVFDLGVS 114
               + +  +      D ++ D   S
Sbjct: 297 HGDAADIDSWWQGDKFDRILLDAPCS 322


>gi|282911386|ref|ZP_06319188.1| SAM-dependent methyltransferase [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282325081|gb|EFB55391.1| SAM-dependent methyltransferase [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|312437781|gb|ADQ76852.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus TCH60]
          Length = 187

 Score = 42.9 bits (100), Expect = 0.065,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 37/85 (43%), Gaps = 6/85 (7%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91
             P  +++DAT G G  +    +     +V   D    A+   ++ ++D+    SL +  
Sbjct: 18  ITPESIVVDATCGNGNDTLFLAEQVPVGHVYGFDIQDLALENTRDKVKDF-NHVSLVKDG 76

Query: 92  FSQLQDYVPD---KGVDGVVFDLGV 113
              ++ ++ D     +D  +F+LG 
Sbjct: 77  HENIEHHINDAHKGHIDAAIFNLGY 101


>gi|194214910|ref|XP_001497936.2| PREDICTED: trimethylguanosine synthase homolog (S. cerevisiae)
           [Equus caballus]
          Length = 946

 Score = 42.9 bits (100), Expect = 0.065,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 58/172 (33%), Gaps = 23/172 (13%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96
            ++DA  G GG +  F   G  VIA+D DP  +   +     Y   ++       F  L 
Sbjct: 696 TVVDAFCGVGGNTIQFALTGKRVIAIDIDPVKIDLARNNAEVYGIADKIEFICGDFLLLA 755

Query: 97  DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR--MSCSGISASDVVNQANVK 154
             +          D+   S      D    +  +   D+R  MS  G     +  +    
Sbjct: 756 SQLK--------ADVVFLSPPWGGPD----YATAETFDIRTMMSPDGFEIFRLSQKIT-N 802

Query: 155 DLTRILGILGEEKQASRIAH-----AIVKRRQSAPFQT-TQDLSSLIQKTVY 200
           ++   L    +  Q + +A       I +   +   +T T     LI+++  
Sbjct: 803 NIVYFLPRNADIDQVASLAGPGGQVEIEQNFLNNKLKTITAYFGDLIRRSAP 854


>gi|313890849|ref|ZP_07824473.1| putative rRNA methylase [Streptococcus pseudoporcinus SPIN 20026]
 gi|313120747|gb|EFR43862.1| putative rRNA methylase [Streptococcus pseudoporcinus SPIN 20026]
          Length = 183

 Score = 42.9 bits (100), Expect = 0.067,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 8/90 (8%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-E 83
           L+ ++         +++DAT G G  +  F     ++ A D    A+    E ++  + E
Sbjct: 13  LDTILDA-----NSILVDATMGNGNDTLYFAPKVKSLYAFDVQKKALQVTGEKLQKAQLE 67

Query: 84  QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
              L Q    ++  Y+     D  +F+LG 
Sbjct: 68  NVQLIQDGHEKVDTYLD--HADAAIFNLGY 95


>gi|91791391|ref|YP_561042.1| sun protein [Shewanella denitrificans OS217]
 gi|91713393|gb|ABE53319.1| sun protein [Shewanella denitrificans OS217]
          Length = 428

 Score = 42.9 bits (100), Expect = 0.068,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 2/86 (2%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQFSLF 88
           LL P   +V+LDA    GG +    ++  N  + A+D D   +   Q+ +   K    + 
Sbjct: 236 LLAPQANEVVLDACAAPGGKTCHLLEIAPNISLTAVDFDLKRLERVQQNLDRLKLTAQVI 295

Query: 89  QATFSQLQDYVPDKGVDGVVFDLGVS 114
               + +  +      D ++ D   S
Sbjct: 296 HGDAANIDSWWQGDKFDRILLDAPCS 321


>gi|15676645|ref|NP_273789.1| hypothetical protein NMB0747 [Neisseria meningitidis MC58]
 gi|7225976|gb|AAF41160.1| conserved hypothetical protein [Neisseria meningitidis MC58]
 gi|325140096|gb|EGC62625.1| putative rRNA methylase [Neisseria meningitidis CU385]
          Length = 188

 Score = 42.9 bits (100), Expect = 0.068,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 7/83 (8%)

Query: 36  PGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQA 90
            G   LD T G  G+   F          V A D  P A++  +  +++       L   
Sbjct: 20  EGGNALDGTAGN-GHDTLFLAQTAGIRGKVWAFDIQPQALNNTRCRLQEAGYSNVRLILD 78

Query: 91  TFSQLQDYVPDKGVDGVVFDLGV 113
               L+ Y+P   +D  +F+ G 
Sbjct: 79  GHENLKQYIPKP-LDAAIFNFGW 100


>gi|218767870|ref|YP_002342382.1| hypothetical protein NMA0960 [Neisseria meningitidis Z2491]
 gi|121051878|emb|CAM08184.1| hypothetical protein NMA0960 [Neisseria meningitidis Z2491]
 gi|319410117|emb|CBY90453.1| putative rRNA methyltransferase [Neisseria meningitidis WUE 2594]
          Length = 188

 Score = 42.9 bits (100), Expect = 0.068,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 7/83 (8%)

Query: 36  PGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQA 90
            G   LD T G  G+   F          V A D  P A++  +  +++       L   
Sbjct: 20  EGGNALDGTAGN-GHDTLFLAQTAGIRGKVWAFDIQPQALNNTRCRLQEAGYSNVRLILD 78

Query: 91  TFSQLQDYVPDKGVDGVVFDLGV 113
               L+ Y+P   +D  +F+ G 
Sbjct: 79  GHENLKQYIPKP-LDAAIFNFGW 100


>gi|114561210|ref|YP_748723.1| sun protein [Shewanella frigidimarina NCIMB 400]
 gi|114332503|gb|ABI69885.1| sun protein [Shewanella frigidimarina NCIMB 400]
          Length = 427

 Score = 42.9 bits (100), Expect = 0.068,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 37/86 (43%), Gaps = 2/86 (2%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88
           LL P   +++LDA    GG S    ++    N++A+D D   ++  Q+ +     +  L 
Sbjct: 235 LLAPTADELVLDACAAPGGKSCHLLELAPTINLVAVDFDQKRLARVQQNLDRLHLKAQLI 294

Query: 89  QATFSQLQDYVPDKGVDGVVFDLGVS 114
               + +  +   +  D ++ D   S
Sbjct: 295 HGDAADIPSWWQGQQFDRILLDAPCS 320


>gi|329768391|ref|ZP_08259885.1| hypothetical protein HMPREF0428_01582 [Gemella haemolysans M341]
 gi|328837144|gb|EGF86785.1| hypothetical protein HMPREF0428_01582 [Gemella haemolysans M341]
          Length = 189

 Score = 42.9 bits (100), Expect = 0.069,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 40/93 (43%), Gaps = 9/93 (9%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDY- 81
           LL++VI         +++DAT G G  +    K  +  V A D    A+      +++  
Sbjct: 11  LLKEVID-----KNSIVVDATAGNGNDTLFLAKTSAKKVYAFDIQQLAIENTTNLIKEAE 65

Query: 82  -KEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
             ++  +   +  +   Y+ +  +  VVF+LG 
Sbjct: 66  LADKCEIILDSHFEFDKYINE-KIRAVVFNLGY 97


>gi|322831104|ref|YP_004211131.1| sun protein [Rahnella sp. Y9602]
 gi|321166305|gb|ADW72004.1| sun protein [Rahnella sp. Y9602]
          Length = 429

 Score = 42.9 bits (100), Expect = 0.069,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85
            + LL+P  G++ILD     GG +    +     +V+A+D D   +    E ++  K   
Sbjct: 238 SVDLLDPQNGELILDLCCAPGGKTTHILEAAPKAHVLAVDVDEQRLKRVHENLQRLKLSA 297

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            + Q    + Q +  D+  D ++ D   S
Sbjct: 298 EVKQGDGREPQMWAGDRIFDRILLDAPCS 326


>gi|119773183|ref|YP_925923.1| sun protein [Shewanella amazonensis SB2B]
 gi|119765683|gb|ABL98253.1| sun protein [Shewanella amazonensis SB2B]
          Length = 427

 Score = 42.9 bits (100), Expect = 0.069,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 1/85 (1%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSLFQ 89
           LL P  G+++LDA    GG S    ++    ++A+D D   +    + +   K    +  
Sbjct: 235 LLAPRDGELVLDACAAPGGKSCHLLELADIELVAVDFDQKRLERVSQNLERLKLDARVIH 294

Query: 90  ATFSQLQDYVPDKGVDGVVFDLGVS 114
                +  +      D ++ D   S
Sbjct: 295 GDAGDIGSWWQGGKFDRILLDAPCS 319


>gi|158522242|ref|YP_001530112.1| sun protein [Desulfococcus oleovorans Hxd3]
 gi|158511068|gb|ABW68035.1| sun protein [Desulfococcus oleovorans Hxd3]
          Length = 468

 Score = 42.9 bits (100), Expect = 0.070,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 12/91 (13%)

Query: 33  NPAPGKVILDATFGAG---GYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQ 89
           +P PG+ +LDA  G G   G+     +    ++A DRD    +   E +     +  +  
Sbjct: 269 DPRPGQRVLDACAGLGGKTGHLARLMENQGRIVAADRD----TAKLERLAGEMTRLGITN 324

Query: 90  ATFSQLQDYVPDK-----GVDGVVFDLGVSS 115
                L   VP++     G D V+ D   S 
Sbjct: 325 VRPMTLDMLVPEQLKDAGGFDRVLADCPCSG 355


>gi|325267933|ref|ZP_08134582.1| ribosomal RNA small subunit methyltransferase B [Kingella
           denitrificans ATCC 33394]
 gi|324980619|gb|EGC16282.1| ribosomal RNA small subunit methyltransferase B [Kingella
           denitrificans ATCC 33394]
          Length = 421

 Score = 42.9 bits (100), Expect = 0.071,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 4/96 (4%)

Query: 20  HVPVL---LEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQ 75
           HV V     ++   LL P   + ILDA    GG +    +     + ALD DP  +   Q
Sbjct: 225 HVSVQDWGAQQAAYLLQPQNNERILDACAAPGGKTGHILEMADCALTALDIDPVRLQRVQ 284

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDL 111
           + +        L  A    L D+   +  D ++ D+
Sbjct: 285 DNLTRLGLHAQLHCAAAQNLDDWWDGQPFDAILADV 320


>gi|332163229|ref|YP_004299806.1| 16S rRNA methyltransferase B [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318607711|emb|CBY29209.1| ribosomal RNA small subunit methyltransferase B [Yersinia
           enterocolitica subsp. palearctica Y11]
 gi|325667459|gb|ADZ44103.1| 16S rRNA methyltransferase B [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 429

 Score = 42.9 bits (100), Expect = 0.071,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85
            + LL+P  G+ ILD     GG +    +     +V+A+D D   +S  +E ++  K   
Sbjct: 238 CVDLLDPQEGEQILDLCAAPGGKTTHILEAAPKAHVLAVDIDEQRLSRVKENLQRLKLHA 297

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            +         ++  D+  D ++ D   S
Sbjct: 298 DVRVGDGRTPDEWCGDQQFDRILLDAPCS 326


>gi|304412733|ref|ZP_07394336.1| sun protein [Shewanella baltica OS183]
 gi|307305802|ref|ZP_07585548.1| sun protein [Shewanella baltica BA175]
 gi|304348943|gb|EFM13358.1| sun protein [Shewanella baltica OS183]
 gi|306911295|gb|EFN41721.1| sun protein [Shewanella baltica BA175]
          Length = 428

 Score = 42.9 bits (100), Expect = 0.071,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 2/86 (2%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88
           LL P   ++ILDA    GG S    ++     ++A+D D   +   Q+ +     +  L 
Sbjct: 235 LLAPQANELILDACAAPGGKSCHLLELEPSIKLVAVDFDAKRLERVQQNLDRLSLKAELI 294

Query: 89  QATFSQLQDYVPDKGVDGVVFDLGVS 114
               + +  +      D ++ D   S
Sbjct: 295 HGDAANIDSWWQGGQFDRILLDAPCS 320


>gi|217971245|ref|YP_002355996.1| sun protein [Shewanella baltica OS223]
 gi|217496380|gb|ACK44573.1| sun protein [Shewanella baltica OS223]
          Length = 428

 Score = 42.9 bits (100), Expect = 0.071,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 2/86 (2%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88
           LL P   ++ILDA    GG S    ++     ++A+D D   +   Q+ +     +  L 
Sbjct: 235 LLAPQANELILDACAAPGGKSCHLLELEPSIKLVAVDFDAKRLERVQQNLDRLSLKAELI 294

Query: 89  QATFSQLQDYVPDKGVDGVVFDLGVS 114
               + +  +      D ++ D   S
Sbjct: 295 HGDAANIDSWWQGGQFDRILLDAPCS 320


>gi|332159509|ref|YP_004424788.1| fmu protein [Pyrococcus sp. NA2]
 gi|331034972|gb|AEC52784.1| fmu protein [Pyrococcus sp. NA2]
          Length = 451

 Score = 42.9 bits (100), Expect = 0.072,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 34/87 (39%), Gaps = 12/87 (13%)

Query: 32  LNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ---- 84
           LNP PG++++D     GG   +     K    + A D D        + ++++ ++    
Sbjct: 257 LNPQPGEIVVDLAAAPGGKTTHMAELMKNKGKIYAFDIDKMR----MKRLKEFVQRMGIK 312

Query: 85  -FSLFQATFSQLQDYVPDKGVDGVVFD 110
                     +  + + ++  D V+ D
Sbjct: 313 IVKPIIKDARKAPEIIGEEVADKVLLD 339


>gi|322385960|ref|ZP_08059600.1| rRNA methylase [Streptococcus cristatus ATCC 51100]
 gi|321269943|gb|EFX52863.1| rRNA methylase [Streptococcus cristatus ATCC 51100]
          Length = 182

 Score = 42.9 bits (100), Expect = 0.072,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 6/92 (6%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82
           +    +A +      V++DAT G  G+ +    ++   V A D    AV   ++ + +  
Sbjct: 7   MAHAFLAEVVTKED-VVVDATMGN-GHDTLFLAQLAKQVYAFDIQEQAVEKTRQRLAEAG 64

Query: 83  -EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
            +   L  A    L  Y         +F+LG 
Sbjct: 65  LDNAQLILAGHETLDQYTDHFK--AAIFNLGY 94


>gi|322391712|ref|ZP_08065179.1| rRNA methylase [Streptococcus peroris ATCC 700780]
 gi|321145422|gb|EFX40816.1| rRNA methylase [Streptococcus peroris ATCC 700780]
          Length = 185

 Score = 42.9 bits (100), Expect = 0.072,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 32/87 (36%), Gaps = 5/87 (5%)

Query: 30  ALLN--PAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQFS 86
             L        +++DAT G G  +    ++   V A D    A+    + +++       
Sbjct: 10  DFLAEIINKEDIVVDATMGNGYDTLFLARLAKQVYAFDIQEQALEKTSQRLQEAGLTNAE 69

Query: 87  LFQATFSQLQDYVPDKGVDGVVFDLGV 113
           L       +  +V +  V   +F+LG 
Sbjct: 70  LILQGHETVDQFVGE--VKAAIFNLGY 94


>gi|152998580|ref|YP_001364261.1| sun protein [Shewanella baltica OS185]
 gi|151363198|gb|ABS06198.1| sun protein [Shewanella baltica OS185]
          Length = 428

 Score = 42.9 bits (100), Expect = 0.072,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 2/86 (2%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88
           LL P   ++ILDA    GG S    ++     ++A+D D   +   Q+ +     +  L 
Sbjct: 235 LLAPQANELILDACAAPGGKSCHLLELEPSIKLVAVDFDAKRLERVQQNLDRLSLKAELI 294

Query: 89  QATFSQLQDYVPDKGVDGVVFDLGVS 114
               + +  +      D ++ D   S
Sbjct: 295 HGDAANIDSWWQGGQFDRILLDAPCS 320


>gi|126172286|ref|YP_001048435.1| sun protein [Shewanella baltica OS155]
 gi|125995491|gb|ABN59566.1| sun protein [Shewanella baltica OS155]
          Length = 428

 Score = 42.9 bits (100), Expect = 0.072,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 2/86 (2%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88
           LL P   ++ILDA    GG S    ++     ++A+D D   +   Q+ +     +  L 
Sbjct: 235 LLAPQANELILDACAAPGGKSCHLLELEPSIKLVAVDFDAKRLERVQQNLDRLSLKAELI 294

Query: 89  QATFSQLQDYVPDKGVDGVVFDLGVS 114
               + +  +      D ++ D   S
Sbjct: 295 HGDAANIDSWWQGGQFDRILLDAPCS 320


>gi|88812777|ref|ZP_01128023.1| hypothetical protein NB231_08197 [Nitrococcus mobilis Nb-231]
 gi|88790015|gb|EAR21136.1| hypothetical protein NB231_08197 [Nitrococcus mobilis Nb-231]
          Length = 235

 Score = 42.9 bits (100), Expect = 0.073,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 23/53 (43%)

Query: 36  PGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLF 88
              +I+D   G G ++    + G  V+ +D  P  +   +  +  + E+F  F
Sbjct: 69  DDSLIVDVPCGTGRHAEVLLEQGHRVVGVDVSPAMLEVARRKLSRFGERFRTF 121


>gi|119719409|ref|YP_919904.1| Fmu (Sun) domain-containing protein [Thermofilum pendens Hrk 5]
 gi|119524529|gb|ABL77901.1| Fmu (Sun) domain protein [Thermofilum pendens Hrk 5]
          Length = 389

 Score = 42.9 bits (100), Expect = 0.074,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 40/109 (36%), Gaps = 15/109 (13%)

Query: 28  VIALLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84
            + LL+P PG  +LD     GG   ++         VIA+DR    V    E  R     
Sbjct: 193 AVRLLDPQPGWTVLDMCAAPGGKTTHAAQLMGDHGEVIAVDRTKSKVDTIMEHARRLG-- 250

Query: 85  FSLFQA---TFSQLQDYVPDKGVDGVVFD-----LGVSSMQIDCGDRGF 125
               +        + +Y+    VD V+ D     LGV        +RGF
Sbjct: 251 LKSVKGLVYDSRYISEYLDKDSVDAVIIDPPCTALGVRPKLWY--ERGF 297


>gi|302832722|ref|XP_002947925.1| hypothetical protein VOLCADRAFT_88325 [Volvox carteri f.
           nagariensis]
 gi|300266727|gb|EFJ50913.1| hypothetical protein VOLCADRAFT_88325 [Volvox carteri f.
           nagariensis]
          Length = 425

 Score = 42.9 bits (100), Expect = 0.074,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 10/88 (11%)

Query: 35  APGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDY-----KEQF 85
            PG   +DAT G  G+   F         +V   D    A+S  +E +  +     +   
Sbjct: 20  QPGDTAVDATCGN-GHDTLFLAQAVGPRGHVHGFDIQDAAISATRERVEAHLTASSRPTI 78

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGV 113
           +L     S L++         V F+LG 
Sbjct: 79  TLHHTCHSGLRELCGSGVARVVAFNLGY 106


>gi|116513225|ref|YP_812132.1| hypothetical protein LACR_2602 [Lactococcus lactis subsp.
          cremoris SK11]
 gi|116108879|gb|ABJ74019.1| SAM-dependent methyltransferase [Lactococcus lactis subsp.
          cremoris SK11]
          Length = 211

 Score = 42.9 bits (100), Expect = 0.074,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 31/67 (46%), Gaps = 5/67 (7%)

Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83
          +L+ +I +       V++DAT G G  +    ++G+ V A D    A+   ++ + +   
Sbjct: 11 MLKDIINV-----DDVVVDATMGNGYDTLFLAELGAKVYAFDVQEAALEATEKRLENKAI 65

Query: 84 QFSLFQA 90
          +  + + 
Sbjct: 66 KTQIMKT 72


>gi|283471027|emb|CAQ50238.1| conserved protein YtqB [Staphylococcus aureus subsp. aureus ST398]
          Length = 187

 Score = 42.9 bits (100), Expect = 0.075,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 37/85 (43%), Gaps = 6/85 (7%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91
             P  +++DAT G G  +    +     +V   D    A+   ++ ++D+    SL +  
Sbjct: 18  ITPESIVVDATCGNGNDTLFLAEQVPEGHVYGFDIQDLALENTRDKVKDF-NYVSLIKDG 76

Query: 92  FSQLQDYVPD---KGVDGVVFDLGV 113
              ++ ++ D     +D  +F+LG 
Sbjct: 77  HENIEHHINDAHKGHIDAAIFNLGY 101


>gi|156932266|ref|YP_001436182.1| 16S rRNA methyltransferase B [Cronobacter sakazakii ATCC BAA-894]
 gi|224493253|sp|A7MPE7|RSMB_ENTS8 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|156530520|gb|ABU75346.1| hypothetical protein ESA_00037 [Cronobacter sakazakii ATCC BAA-894]
          Length = 429

 Score = 42.9 bits (100), Expect = 0.075,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85
            + LL P  G+ ILD     GG +    +     +V+A+D D   +S   E ++  K + 
Sbjct: 238 CVELLAPQNGETILDLCAAPGGKTTHILEAAPQASVMAVDVDAQRISRVYENLKRLKMKA 297

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            +          +  +   D ++ D   S
Sbjct: 298 DVKVGDGRFPSTWCGETQFDRILLDAPCS 326


>gi|326434165|gb|EGD79735.1| hypothetical protein PTSG_13091 [Salpingoeca sp. ATCC 50818]
          Length = 441

 Score = 42.9 bits (100), Expect = 0.076,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 23/38 (60%)

Query: 214 FQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFH 251
            QALR+ VN+E+ +L   L +    ++ GG + V+SF 
Sbjct: 1   MQALRVCVNDELVDLESALTTIAPRVRIGGRIGVLSFQ 38



 Score = 39.0 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 254 EDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRA 313
           ED  V++   +    +  ++    +      ++ + KK   P  +++  N RSRSA+L+ 
Sbjct: 379 ED--VRRRLRAAEDALRQMQPPRWTLPPELEYRCVWKKEAGPAGKELRRNPRSRSARLQM 436

Query: 314 GMRTV 318
             R  
Sbjct: 437 YERIR 441


>gi|322387483|ref|ZP_08061093.1| rRNA methylase [Streptococcus infantis ATCC 700779]
 gi|321142012|gb|EFX37507.1| rRNA methylase [Streptococcus infantis ATCC 700779]
          Length = 185

 Score = 42.9 bits (100), Expect = 0.076,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 33/88 (37%), Gaps = 7/88 (7%)

Query: 30  ALLN--PAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQF 85
             L        V++DAT G  G+ +    K+   V A D    A+    + +++      
Sbjct: 10  DFLAQVITKDDVVVDATMGN-GHDTLFLAKLAKQVYAFDIQEQALQKTSKRIQEAGLTNV 68

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGV 113
            L       +  +V +  V   +F+LG 
Sbjct: 69  DLILQGHETVDQFVTE--VKAAIFNLGY 94


>gi|326791105|ref|YP_004308926.1| rRNA methylase [Clostridium lentocellum DSM 5427]
 gi|326541869|gb|ADZ83728.1| rRNA methylase [Clostridium lentocellum DSM 5427]
          Length = 184

 Score = 42.9 bits (100), Expect = 0.077,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 5/83 (6%)

Query: 35  APGKVILDATFGAGGY-SRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQA 90
             G + +DAT G  G+ +   C++      V+A D    AV+  +  +++   +  ++  
Sbjct: 18  KAGDLCIDATAGR-GHDTVFLCELVGDTGRVLAFDIQEEAVNSTKFLLKEKGLKAEVYLE 76

Query: 91  TFSQLQDYVPDKGVDGVVFDLGV 113
           + + +  YV  + VDG+VF+ G 
Sbjct: 77  SHTHMDHYVKPETVDGIVFNFGY 99


>gi|119717022|ref|YP_923987.1| methyltransferase type 11 [Nocardioides sp. JS614]
 gi|119537683|gb|ABL82300.1| Methyltransferase type 11 [Nocardioides sp. JS614]
          Length = 249

 Score = 42.9 bits (100), Expect = 0.077,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 30/68 (44%)

Query: 30 ALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQ 89
            L   PG+ +LD   G G ++    + G++V+A D D   ++   E     KE   + +
Sbjct: 7  DRLGLRPGERVLDMGAGGGRHAFEMYRRGADVVAFDMDADELAGVLEIFGAMKENGEVPE 66

Query: 90 ATFSQLQD 97
             + ++ 
Sbjct: 67 GANADIKQ 74


>gi|322377325|ref|ZP_08051816.1| SAM-dependent methyltransferase, MraW methylase family
           [Streptococcus sp. M334]
 gi|321281525|gb|EFX58534.1| SAM-dependent methyltransferase, MraW methylase family
           [Streptococcus sp. M334]
          Length = 187

 Score = 42.9 bits (100), Expect = 0.078,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 10/91 (10%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82
           L +V+         +++DAT G  G+ +    K+   V A D    A+   QE +     
Sbjct: 14  LAEVV-----TQDDIVVDATMGN-GHDTLFLAKLAKKVYAFDIQEQALEKTQERLNQAGM 67

Query: 83  EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
               L       L  +V +    G+ F+LG 
Sbjct: 68  TNAQLILQGHETLDQFVTEAKA-GI-FNLGY 96


>gi|306824940|ref|ZP_07458283.1| rRNA methylase [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304432767|gb|EFM35740.1| rRNA methylase [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 185

 Score = 42.9 bits (100), Expect = 0.080,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 10/91 (10%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82
           L +V+         +++DAT G  G+ +    K+   V A D    A+   QE +     
Sbjct: 12  LAEVV----TKED-IVVDATMGN-GHDTLFLAKLAKRVYAFDIQEQALEKTQERLDQAGM 65

Query: 83  EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
               L       L  +V +    G+ F+LG 
Sbjct: 66  TNAQLILQGHETLDQFVTEAKA-GI-FNLGY 94


>gi|116333701|ref|YP_795228.1| SAM-dependent methyltransferase [Lactobacillus brevis ATCC 367]
 gi|116099048|gb|ABJ64197.1| SAM-dependent methyltransferase [Lactobacillus brevis ATCC 367]
          Length = 188

 Score = 42.9 bits (100), Expect = 0.080,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 13/100 (13%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQE 76
           H   LL++ +      PG  ++DAT G G  +           +VI  D    A+   Q+
Sbjct: 11  HT--LLKECV-----GPGATVIDATVGKGNDTVFLANLVGKSGHVIGFDIQQAALDATQQ 63

Query: 77  --TMRDYKEQFSLFQATFSQLQDYV-PDKGVDGVVFDLGV 113
             T+    +Q +L      Q+  Y+ P+  V   +F+LG 
Sbjct: 64  QLTLTGLSQQVTLHAVGHEQVAAYLDPETPVAAAIFNLGY 103


>gi|269140542|ref|YP_003297243.1| 16S rRNA methyltransferase B [Edwardsiella tarda EIB202]
 gi|267986203|gb|ACY86032.1| 16S rRNA methyltransferase B [Edwardsiella tarda EIB202]
 gi|304560327|gb|ADM42991.1| Ribosomal RNA small subunit methyltransferase B [Edwardsiella tarda
           FL6-60]
          Length = 430

 Score = 42.9 bits (100), Expect = 0.082,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 37/89 (41%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85
            + LL+P  G+ ILD     GG +    +     +V+A+D D   +   +E ++  ++  
Sbjct: 239 SVDLLDPQDGEQILDLCCAPGGKTTHILEAAPKAHVLAVDVDESRLKRVRENLQRLQQHA 298

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            +         ++   +  D ++ D   S
Sbjct: 299 EIRCGDGRTPDEWARGRQFDRILLDAPCS 327


>gi|123444066|ref|YP_001008036.1| 16S rRNA methyltransferase B [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|224493291|sp|A1JRZ3|RSMB_YERE8 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|122091027|emb|CAL13910.1| conserved hypothetical protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 429

 Score = 42.9 bits (100), Expect = 0.083,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 38/89 (42%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85
            + LL+P  G+ ILD     GG +    +     +V+A+D D   +S  +E ++  +   
Sbjct: 238 CVDLLDPQDGEQILDLCAAPGGKTTHILEAAPKVHVLAVDIDEQRLSRVKENLQRLRLHA 297

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            +         ++  D+  D ++ D   S
Sbjct: 298 DVRVGDGRTPDEWCGDQQFDRILLDAPCS 326


>gi|240141547|ref|YP_002966027.1| putative protein-L-isoaspartate O-methyltransferase
           [Methylobacterium extorquens AM1]
 gi|240011524|gb|ACS42750.1| putative protein-L-isoaspartate O-methyltransferase
           [Methylobacterium extorquens AM1]
          Length = 216

 Score = 42.5 bits (99), Expect = 0.084,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 7/71 (9%)

Query: 22  PVLLEKVIALLNPAPGKVILDATFGAG-GYSRSFCK-MGSNVIALDRDPFAVSCGQETMR 79
           P+LL ++I  L   PG   LD   G G GY  +  + +G+ V+AL+ DP  +   +E + 
Sbjct: 68  PMLLARLIQALKIRPGTRALD--VGTGYGYGAAVLRQLGAEVVALESDPDLIGAARERL- 124

Query: 80  DYKEQFSLFQA 90
              +  +L Q 
Sbjct: 125 --GDTVNLVQG 133


>gi|212709010|ref|ZP_03317138.1| hypothetical protein PROVALCAL_00042 [Providencia alcalifaciens DSM
           30120]
 gi|212688376|gb|EEB47904.1| hypothetical protein PROVALCAL_00042 [Providencia alcalifaciens DSM
           30120]
          Length = 428

 Score = 42.5 bits (99), Expect = 0.084,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 43/89 (48%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85
              LL+P  G+ ILD     GG +    ++    +V+A+D D   +   +E ++  K+  
Sbjct: 238 CAELLSPINGENILDLCAAPGGKTTHILELAPKAHVLAVDIDDARLKRVKENLQRLKQHA 297

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
           ++ Q   ++ +++  D+  D ++ D   S
Sbjct: 298 TVIQGDGTKPEEWAKDQLFDRILLDAPCS 326


>gi|52842799|ref|YP_096598.1| rRNA methyltransferase (SUN protein) [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52629910|gb|AAU28651.1| rRNA methyltransferase (SUN protein) [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 427

 Score = 42.5 bits (99), Expect = 0.084,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 37/87 (42%), Gaps = 3/87 (3%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCGQETMRDYKEQFSL 87
           LL+  PG+ +LDA    GG +    +    +   +ALD DP  +   ++ +     Q ++
Sbjct: 232 LLSLKPGQRVLDACCAPGGKTCHILEKEPGLASCVALDLDPQRLQRVRDNLNRLDLQATV 291

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGVS 114
            Q    + + +      D ++ D   S
Sbjct: 292 VQGDVLEPRSWWDGHPFDRILLDAPCS 318


>gi|189054471|dbj|BAG37244.1| unnamed protein product [Homo sapiens]
          Length = 853

 Score = 42.5 bits (99), Expect = 0.087,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 2/68 (2%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96
           V++DA  G GG +  F   G  VIA+D DP  ++  +     Y   ++       F  L 
Sbjct: 693 VVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA 752

Query: 97  DYVPDKGV 104
            ++    V
Sbjct: 753 SFLKADVV 760


>gi|151301096|ref|NP_079107.6| trimethylguanosine synthase [Homo sapiens]
 gi|317373500|sp|Q96RS0|TGS1_HUMAN RecName: Full=Trimethylguanosine synthase; AltName:
           Full=CLL-associated antigen KW-2; AltName:
           Full=Cap-specific guanine-N2 methyltransferase; AltName:
           Full=Hepatocellular carcinoma-associated antigen 137;
           AltName: Full=Nuclear receptor coactivator 6-interacting
           protein; AltName: Full=PRIP-interacting protein with
           methyltransferase motif; Short=PIMT; Short=PIPMT
 gi|182887849|gb|AAI60105.1| Trimethylguanosine synthase homolog (S. cerevisiae) [synthetic
           construct]
          Length = 853

 Score = 42.5 bits (99), Expect = 0.087,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 2/68 (2%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96
           V++DA  G GG +  F   G  VIA+D DP  ++  +     Y   ++       F  L 
Sbjct: 693 VVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA 752

Query: 97  DYVPDKGV 104
            ++    V
Sbjct: 753 SFLKADVV 760


>gi|119607169|gb|EAW86763.1| nuclear receptor coactivator 6 interacting protein, isoform CRA_c
           [Homo sapiens]
          Length = 793

 Score = 42.5 bits (99), Expect = 0.087,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 2/68 (2%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96
           V++DA  G GG +  F   G  VIA+D DP  ++  +     Y   ++       F  L 
Sbjct: 693 VVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA 752

Query: 97  DYVPDKGV 104
            ++    V
Sbjct: 753 SFLKADVV 760


>gi|15077008|gb|AAK83025.1|AF286340_1 hepatocellular carcinoma-associated antigen 137 [Homo sapiens]
          Length = 853

 Score = 42.5 bits (99), Expect = 0.087,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 2/68 (2%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96
           V++DA  G GG +  F   G  VIA+D DP  ++  +     Y   ++       F  L 
Sbjct: 693 VVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA 752

Query: 97  DYVPDKGV 104
            ++    V
Sbjct: 753 SFLKADVV 760


>gi|14278850|gb|AAK27730.1| PRIP-interacting protein PIPMT [Homo sapiens]
          Length = 852

 Score = 42.5 bits (99), Expect = 0.087,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 2/68 (2%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96
           V++DA  G GG +  F   G  VIA+D DP  ++  +     Y   ++       F  L 
Sbjct: 692 VVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA 751

Query: 97  DYVPDKGV 104
            ++    V
Sbjct: 752 SFLKADVV 759


>gi|19851925|gb|AAL99922.1|AF432215_1 CLL-associated antigen KW-2 [Homo sapiens]
          Length = 853

 Score = 42.5 bits (99), Expect = 0.087,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 2/68 (2%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96
           V++DA  G GG +  F   G  VIA+D DP  ++  +     Y   ++       F  L 
Sbjct: 693 VVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA 752

Query: 97  DYVPDKGV 104
            ++    V
Sbjct: 753 SFLKADVV 760


>gi|119607168|gb|EAW86762.1| nuclear receptor coactivator 6 interacting protein, isoform CRA_b
           [Homo sapiens]
          Length = 853

 Score = 42.5 bits (99), Expect = 0.087,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 2/68 (2%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96
           V++DA  G GG +  F   G  VIA+D DP  ++  +     Y   ++       F  L 
Sbjct: 693 VVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA 752

Query: 97  DYVPDKGV 104
            ++    V
Sbjct: 753 SFLKADVV 760


>gi|168218096|ref|ZP_02643721.1| conserved hypothetical protein [Clostridium perfringens NCTC 8239]
 gi|182379886|gb|EDT77365.1| conserved hypothetical protein [Clostridium perfringens NCTC 8239]
          Length = 183

 Score = 42.5 bits (99), Expect = 0.088,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 5/76 (6%)

Query: 39  VILDATFGAGGYSRSFC-KMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD 97
           + +DAT G  G+   F  ++   V A D    AV+  +      KE   +   +    + 
Sbjct: 25  IAIDATLGN-GHDCDFLSELFKKVYAFDIQEEAVNSYK---SKNKENVEVILDSHENFET 80

Query: 98  YVPDKGVDGVVFDLGV 113
           Y+ ++ VD +V++LG 
Sbjct: 81  YIKEENVDCIVYNLGY 96


>gi|168207497|ref|ZP_02633502.1| conserved hypothetical protein [Clostridium perfringens E str.
           JGS1987]
 gi|170661178|gb|EDT13861.1| conserved hypothetical protein [Clostridium perfringens E str.
           JGS1987]
          Length = 183

 Score = 42.5 bits (99), Expect = 0.088,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 5/76 (6%)

Query: 39  VILDATFGAGGYSRSFC-KMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD 97
           + +DAT G  G+   F  ++   V A D    AV+  +      KE   +   +    + 
Sbjct: 25  IAIDATLGN-GHDCDFLSELFKKVYAFDIQEEAVNSYK---SKNKENVEVILDSHENFET 80

Query: 98  YVPDKGVDGVVFDLGV 113
           Y+ ++ VD +V++LG 
Sbjct: 81  YIKEENVDCIVYNLGY 96


>gi|110800429|ref|YP_695783.1| hypothetical protein CPF_1337 [Clostridium perfringens ATCC 13124]
 gi|168212064|ref|ZP_02637689.1| conserved hypothetical protein [Clostridium perfringens B str. ATCC
           3626]
 gi|110675076|gb|ABG84063.1| conserved hypothetical protein [Clostridium perfringens ATCC 13124]
 gi|170710019|gb|EDT22201.1| conserved hypothetical protein [Clostridium perfringens B str. ATCC
           3626]
          Length = 183

 Score = 42.5 bits (99), Expect = 0.088,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 5/76 (6%)

Query: 39  VILDATFGAGGYSRSFC-KMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD 97
           + +DAT G  G+   F  ++   V A D    AV+  +      KE   +   +    + 
Sbjct: 25  IAIDATLGN-GHDCDFLSELFKKVYAFDIQEEAVNSYK---SKNKENVEVILDSHENFET 80

Query: 98  YVPDKGVDGVVFDLGV 113
           Y+ ++ VD +V++LG 
Sbjct: 81  YIKEENVDCIVYNLGY 96


>gi|18310063|ref|NP_561997.1| hypothetical protein CPE1081 [Clostridium perfringens str. 13]
 gi|18144742|dbj|BAB80787.1| conserved hypothetical protein [Clostridium perfringens str. 13]
          Length = 188

 Score = 42.5 bits (99), Expect = 0.088,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 5/76 (6%)

Query: 39  VILDATFGAGGYSRSFC-KMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD 97
           + +DAT G  G+   F  ++   V A D    AV+  +      KE   +   +    + 
Sbjct: 30  IAIDATLGN-GHDCDFLSELFKKVYAFDIQEEAVNSYK---SKNKENVEVILDSHENFET 85

Query: 98  YVPDKGVDGVVFDLGV 113
           Y+ ++ VD +V++LG 
Sbjct: 86  YIKEENVDCIVYNLGY 101


>gi|308048558|ref|YP_003912124.1| RNA methyltransferase, TrmA family [Ferrimonas balearica DSM 9799]
 gi|307630748|gb|ADN75050.1| RNA methyltransferase, TrmA family [Ferrimonas balearica DSM 9799]
          Length = 447

 Score = 42.5 bits (99), Expect = 0.088,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 2/89 (2%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82
           ++ + I  L P PG+  LD   G G ++ +     + +I ++  P  V   +    +   
Sbjct: 284 MISQAIEWLQPQPGEKGLDLFCGGGNFTLALAGQSAEIIGVEGVPAMVERARARAAELGL 343

Query: 83  EQFSLFQATF-SQLQDYVPDKGVDGVVFD 110
           EQ     A    +       K VD V+ D
Sbjct: 344 EQLRFEYADLNGEAPKAQWLKDVDWVLLD 372


>gi|149910330|ref|ZP_01898973.1| Putative Sun protein [Moritella sp. PE36]
 gi|149806578|gb|EDM66546.1| Putative Sun protein [Moritella sp. PE36]
          Length = 431

 Score = 42.5 bits (99), Expect = 0.088,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 3/88 (3%)

Query: 30  ALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDYKEQFS 86
             L+  PG+++LDA    GG +    +      +++A+D D   +S  QE +   +    
Sbjct: 237 QFLDAQPGELVLDACAAPGGKTAHILERQPALKHLVAVDFDATRLSRVQENLTRMQLDAE 296

Query: 87  LFQATFSQLQDYVPDKGVDGVVFDLGVS 114
           L     S+ +D+      D ++ D   S
Sbjct: 297 LIHGDASKPEDWWQGDKFDRILLDAPCS 324


>gi|317494309|ref|ZP_07952723.1| ribosomal RNA small subunit methyltransferase B [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316917559|gb|EFV38904.1| ribosomal RNA small subunit methyltransferase B [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 430

 Score = 42.5 bits (99), Expect = 0.089,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85
            + LL+P  G+ ILD     GG +    +     +V+A+D D   +   +E +   ++Q 
Sbjct: 239 CVDLLDPQNGEQILDLCCAPGGKTTHILEAAPKAHVLAVDVDENRLRRVKENLHRLQQQA 298

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            +        + +  DK  D ++ D   S
Sbjct: 299 EVKCGDGRYPEKWCGDKQFDRILLDAPCS 327


>gi|238021729|ref|ZP_04602155.1| hypothetical protein GCWU000324_01632 [Kingella oralis ATCC 51147]
 gi|237866343|gb|EEP67385.1| hypothetical protein GCWU000324_01632 [Kingella oralis ATCC 51147]
          Length = 418

 Score = 42.5 bits (99), Expect = 0.089,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 35/88 (39%), Gaps = 13/88 (14%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQ- 89
           LLNP  G+ +LDA    GG +    ++       D D  A+    + ++  ++  +    
Sbjct: 239 LLNPQHGERVLDACAAPGGKTGHILELA------DCDLTALDIAPQRLQRVRDNLARLHF 292

Query: 90  ------ATFSQLQDYVPDKGVDGVVFDL 111
                 A    L D+   +  D ++ D+
Sbjct: 293 QAALHCADAQNLSDWYNGEPFDAILADI 320


>gi|210622939|ref|ZP_03293444.1| hypothetical protein CLOHIR_01392 [Clostridium hiranonis DSM 13275]
 gi|210153905|gb|EEA84911.1| hypothetical protein CLOHIR_01392 [Clostridium hiranonis DSM 13275]
          Length = 193

 Score = 42.5 bits (99), Expect = 0.089,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 6/85 (7%)

Query: 34  PAPGKVILDATFGAGGYS---RSFCKMGSNVIALDRDPFAVSCGQETMR--DYKEQFSLF 88
              G V +DAT G G  +            V A D    A+   ++ ++  +++++  L 
Sbjct: 22  IGEGDVCIDATMGNGYDTVFLAEIVGENGKVYAFDVQEEAIKSTEKKVKKLEFEDRVELI 81

Query: 89  QATFSQLQDYVPDKGVDGVVFDLGV 113
                 + +YV D  +   VF+LG 
Sbjct: 82  LDGHENISNYVKD-SIKCAVFNLGY 105


>gi|150399288|ref|YP_001323055.1| precorrin-6Y C5,15-methyltransferase subunit CbiT [Methanococcus
           vannielii SB]
 gi|166225723|sp|A6UPM1|CBIT_METVS RecName: Full=Probable cobalt-precorrin-6Y C(15)-methyltransferase
           [decarboxylating]
 gi|150011991|gb|ABR54443.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Methanococcus vannielii SB]
          Length = 180

 Score = 42.5 bits (99), Expect = 0.089,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 6/89 (6%)

Query: 21  VPVLLEKV----IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQE 76
           VP+  E++    +  LN  P  +ILD   G+GG +    K    V A+D    A+    +
Sbjct: 13  VPITKEEIRAISVEKLNICPEDIILDIGCGSGGMTVEISKRCKFVYAVDGSKDAIDTTLK 72

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVD 105
            M  +       +  F   +D + +  V+
Sbjct: 73  NMDKF--NVKNCEVYFGDAKDLISNFKVN 99


>gi|312134220|ref|YP_004001558.1| short-chain dehydrogenase/reductase sdr [Caldicellulosiruptor
           owensensis OL]
 gi|311774271|gb|ADQ03758.1| short-chain dehydrogenase/reductase SDR [Caldicellulosiruptor
           owensensis OL]
          Length = 264

 Score = 42.5 bits (99), Expect = 0.090,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 80/231 (34%), Gaps = 48/231 (20%)

Query: 51  SRSFCKMGSNVIALDRDPFAVSCGQETMRD-YKEQFSLFQATFSQLQDYVPDKGVDGVVF 109
           + SF + G+ V A+D+D  A+    +   D +K++ + F+   +  ++      V+ V  
Sbjct: 31  ALSFLENGARVFAIDKDREAIEDASQDFFDKFKDRITFFECDLADAKE------VELVCQ 84

Query: 110 DLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQ- 168
            +G S+               G +D+ ++ + IS+   + + +V +   ++ +       
Sbjct: 85  KIGKSA---------------GNVDVLVNNAAISSIKWIEERSVDEWDEVINVNLRAPYL 129

Query: 169 -ASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRI----HPATRSFQALRIFVNN 223
               +   + +        +T+ L S      Y +    I    H    S  + +I VN 
Sbjct: 130 MVKFLLPYLNEGASIVNIASTRALMSEPNTEPYSASKGGILALTHSLAISLSSRKIRVNA 189

Query: 224 -EIEELAQG------------LRSAEKALKAGGLLIV-------VSFHSLE 254
                +               LR  +      G + V       + F S E
Sbjct: 190 ISPGWIETSKYRKRKYRREPELREVDHLQHPAGRVGVPEDIANAILFLSSE 240


>gi|300709747|ref|YP_003735561.1| Methyltransferase type 11 [Halalkalicoccus jeotgali B3]
 gi|299123430|gb|ADJ13769.1| Methyltransferase type 11 [Halalkalicoccus jeotgali B3]
          Length = 206

 Score = 42.5 bits (99), Expect = 0.090,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 24/60 (40%)

Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83
          +  + +++L+  P   +LD   G G  +    +   +V  LD+ P  +      +  +  
Sbjct: 33 MRGQALSMLDIDPDDRVLDVGCGTGFATEGLLEHAEDVHGLDQSPHQLEKAWAKLGKHDP 92


>gi|146319324|ref|YP_001199036.1| SAM-dependent methyltransferase [Streptococcus suis 05ZYH33]
 gi|146321528|ref|YP_001201239.1| SAM-dependent methyltransferase [Streptococcus suis 98HAH33]
 gi|223934023|ref|ZP_03625977.1| putative rRNA methylase [Streptococcus suis 89/1591]
 gi|253752355|ref|YP_003025496.1| rRNA methylase [Streptococcus suis SC84]
 gi|253754181|ref|YP_003027322.1| rRNA methylase [Streptococcus suis P1/7]
 gi|253756115|ref|YP_003029255.1| rRNA methylase [Streptococcus suis BM407]
 gi|302024304|ref|ZP_07249515.1| rRNA methylase [Streptococcus suis 05HAS68]
 gi|330833292|ref|YP_004402117.1| SAM-dependent methyltransferase [Streptococcus suis ST3]
 gi|145690130|gb|ABP90636.1| SAM-dependent methyltransferase [Streptococcus suis 05ZYH33]
 gi|145692334|gb|ABP92839.1| SAM-dependent methyltransferase [Streptococcus suis 98HAH33]
 gi|223897312|gb|EEF63719.1| putative rRNA methylase [Streptococcus suis 89/1591]
 gi|251816644|emb|CAZ52285.1| putative rRNA methylase [Streptococcus suis SC84]
 gi|251818579|emb|CAZ56413.1| putative rRNA methylase [Streptococcus suis BM407]
 gi|251820427|emb|CAR47091.1| putative rRNA methylase [Streptococcus suis P1/7]
 gi|292558957|gb|ADE31958.1| Putative rRNA methylase [Streptococcus suis GZ1]
 gi|319758759|gb|ADV70701.1| SAM-dependent methyltransferase [Streptococcus suis JS14]
 gi|329307515|gb|AEB81931.1| SAM-dependent methyltransferase [Streptococcus suis ST3]
          Length = 184

 Score = 42.5 bits (99), Expect = 0.091,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 5/75 (6%)

Query: 41  LDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQLQDY 98
           +DAT G  G+ +    +    V+A D    A++   E +         L       L  Y
Sbjct: 23  VDATMGN-GHDTLFLAQRAGKVVAFDIQEQALTTTAEKLEKAGLTNAQLVLTGHENLDQY 81

Query: 99  VPDKGVDGVVFDLGV 113
           V +      +F+LG 
Sbjct: 82  VDECK--AAIFNLGY 94


>gi|223983685|ref|ZP_03633861.1| hypothetical protein HOLDEFILI_01142 [Holdemania filiformis DSM
           12042]
 gi|225572812|ref|ZP_03781567.1| hypothetical protein RUMHYD_01003 [Blautia hydrogenotrophica DSM
           10507]
 gi|227824269|ref|ZP_03989101.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|229827136|ref|ZP_04453205.1| hypothetical protein GCWU000182_02521 [Abiotrophia defectiva ATCC
           49176]
 gi|291459465|ref|ZP_06598855.1| methyltransferase domain protein [Oribacterium sp. oral taxon 078
           str. F0262]
 gi|223964382|gb|EEF68718.1| hypothetical protein HOLDEFILI_01142 [Holdemania filiformis DSM
           12042]
 gi|225039869|gb|EEG50115.1| hypothetical protein RUMHYD_01003 [Blautia hydrogenotrophica DSM
           10507]
 gi|226904768|gb|EEH90686.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|229788754|gb|EEP24868.1| hypothetical protein GCWU000182_02521 [Abiotrophia defectiva ATCC
           49176]
 gi|291417922|gb|EFE91641.1| methyltransferase domain protein [Oribacterium sp. oral taxon 078
           str. F0262]
          Length = 255

 Score = 42.5 bits (99), Expect = 0.092,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 1/86 (1%)

Query: 3   SKSCKTMSSAIHHTIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV 61
            K+ +    A+     + H  V+  KV  LL+P P   ILD   G G YS    + G++V
Sbjct: 32  EKNAQFWDDAMGDESNEFHREVVRPKVTELLSPDPSDYILDIACGNGNYSSYLAQRGASV 91

Query: 62  IALDRDPFAVSCGQETMRDYKEQFSL 87
           +A D     +   +     Y +Q   
Sbjct: 92  VAFDYSKKMIELAKRRRSQYAKQIEF 117


>gi|331084540|ref|ZP_08333640.1| hypothetical protein HMPREF0992_02564 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330401090|gb|EGG80684.1| hypothetical protein HMPREF0992_02564 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 198

 Score = 42.5 bits (99), Expect = 0.093,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 1/86 (1%)

Query: 3   SKSCKTMSSAIHHTIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV 61
            K+ +    A+     + H  V+  KV  LL+P P   ILD   G G YS    + G++V
Sbjct: 32  EKNAQFWDDAMGDESNEFHREVVRPKVTELLSPDPSDYILDIACGNGNYSSYLAQRGASV 91

Query: 62  IALDRDPFAVSCGQETMRDYKEQFSL 87
           +A D     +   +     Y +Q   
Sbjct: 92  VAFDYSKKMIELAKRRRSQYAKQIEF 117


>gi|124027398|ref|YP_001012718.1| tRNA and rRNA cytosine-C5-methylase [Hyperthermus butylicus DSM
           5456]
 gi|123978092|gb|ABM80373.1| tRNA and rRNA cytosine-C5-methylase [Hyperthermus butylicus DSM
           5456]
          Length = 472

 Score = 42.5 bits (99), Expect = 0.093,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 4/83 (4%)

Query: 32  LNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQFSL 87
           L+P PG  ++D     GG   +     K    + A D D   +   +  +R        +
Sbjct: 274 LDPKPGMTVVDLAAAPGGKTSHIAELMKNHGRIYAFDIDRVRIKRMRMILRRMGITIVRI 333

Query: 88  FQATFSQLQDYVPDKGVDGVVFD 110
           F+    +    + ++  D V+ D
Sbjct: 334 FEKDAREAPRILGEEIADRVLLD 356


>gi|313637570|gb|EFS02980.1| methylase protein [Listeria seeligeri FSL S4-171]
          Length = 191

 Score = 42.5 bits (99), Expect = 0.095,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 8/86 (9%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK--EQFSL 87
             PG  ++DAT G  G+             +V+  D    A++  +  + +     Q  L
Sbjct: 18  VRPGDYVVDATCGN-GHDTLLLAELVGVNGHVLGFDIQQVAIAATKTRLENAAVSSQVEL 76

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGV 113
             A+ + + +Y     V   +F+LG 
Sbjct: 77  ICASHATIPEY-ATTPVRAAIFNLGY 101


>gi|293365734|ref|ZP_06612443.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
 gi|291316102|gb|EFE56546.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
          Length = 185

 Score = 42.5 bits (99), Expect = 0.095,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 10/91 (10%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82
           L +V+         +++DAT G  G+ +    K+   V A D    A+   QE +     
Sbjct: 12  LAEVV----TKED-IVVDATMGN-GHDTLFLAKLAKKVYAFDIQEKALEKTQERLDQAGM 65

Query: 83  EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
               L      +L  +V +    G+ F+LG 
Sbjct: 66  TNAQLILQGHEKLDQFVTEAKA-GI-FNLGY 94


>gi|289434949|ref|YP_003464821.1| methylase protein [Listeria seeligeri serovar 1/2b str. SLCC3954]
 gi|289171193|emb|CBH27735.1| methylase protein [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 191

 Score = 42.5 bits (99), Expect = 0.095,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 8/86 (9%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK--EQFSL 87
             PG  ++DAT G  G+             +V+  D    A++  +  + +     Q  L
Sbjct: 18  VRPGDYVVDATCGN-GHDTLLLAELVGVNGHVLGFDIQQVAIAATKTRLENAAVSSQVEL 76

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGV 113
             A+ + + +Y     V   +F+LG 
Sbjct: 77  ICASHATIPEY-ATTPVRAAIFNLGY 101


>gi|46852026|gb|AAT02709.1| hypothetical rhabdomyosarcoma antigen MU-RMS-40.15 [Homo sapiens]
          Length = 578

 Score = 42.5 bits (99), Expect = 0.095,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 2/68 (2%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96
           V++DA  G GG +  F   G  VIA+D DP  ++  +     Y   ++       F  L 
Sbjct: 418 VVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA 477

Query: 97  DYVPDKGV 104
            ++    V
Sbjct: 478 SFLKADVV 485


>gi|319892816|ref|YP_004149691.1| SAM-dependent methyltransferase, MraW methylase family
           [Staphylococcus pseudintermedius HKU10-03]
 gi|317162512|gb|ADV06055.1| SAM-dependent methyltransferase, MraW methylase family
           [Staphylococcus pseudintermedius HKU10-03]
 gi|323464152|gb|ADX76305.1| rRNA methylase, putative [Staphylococcus pseudintermedius ED99]
          Length = 187

 Score = 42.5 bits (99), Expect = 0.095,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 8/81 (9%)

Query: 39  VILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95
           V++DAT G  G+   F        +V   D    A+   ++ + DY    SLF      +
Sbjct: 23  VVIDATCGN-GHDTKFLADLVPHGHVYGCDIQQEAIENTKQRVHDY-NNVSLFHTGHEWI 80

Query: 96  QDYVPDKG---VDGVVFDLGV 113
             Y+ D+    V   +F+LG 
Sbjct: 81  TQYIRDEHLTQVHAAIFNLGY 101


>gi|269140060|ref|YP_003296761.1| 23S rRNA 5-methyluridine methyltransferase [Edwardsiella tarda
           EIB202]
 gi|267985721|gb|ACY85550.1| 23S rRNA 5-methyluridine methyltransferase [Edwardsiella tarda
           EIB202]
 gi|304559888|gb|ADM42552.1| 23S rRNA (Uracil-5-) -methyltransferase RumA [Edwardsiella tarda
           FL6-60]
          Length = 420

 Score = 42.5 bits (99), Expect = 0.095,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 36/90 (40%), Gaps = 3/90 (3%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82
           ++E+ +A L+    + +LD   G G ++    +    V+ ++  P  V+  Q   R+   
Sbjct: 260 MVEQALAWLDVRADERVLDLFCGMGNFTLPLARRAQRVVGVEGVPELVATAQNNARNNGL 319

Query: 83  EQFSLFQATFSQ--LQDYVPDKGVDGVVFD 110
                F     +   +     +G D ++ D
Sbjct: 320 SNVEFFHQNLEEDVTRQAWAAQGFDKILLD 349


>gi|241913349|pdb|3GDH|A Chain A, Methyltransferase Domain Of Human Trimethylguanosine
           Synthase 1 (Tgs1) Bound To M7gtp And
           Adenosyl-Homocysteine (Active Form)
 gi|241913350|pdb|3GDH|B Chain B, Methyltransferase Domain Of Human Trimethylguanosine
           Synthase 1 (Tgs1) Bound To M7gtp And
           Adenosyl-Homocysteine (Active Form)
 gi|241913351|pdb|3GDH|C Chain C, Methyltransferase Domain Of Human Trimethylguanosine
           Synthase 1 (Tgs1) Bound To M7gtp And
           Adenosyl-Homocysteine (Active Form)
          Length = 241

 Score = 42.5 bits (99), Expect = 0.095,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 2/68 (2%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96
           V++DA  G GG +  F   G  VIA+D DP  ++  +     Y   ++       F  L 
Sbjct: 81  VVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA 140

Query: 97  DYVPDKGV 104
            ++    V
Sbjct: 141 SFLKADVV 148


>gi|241889241|ref|ZP_04776544.1| SAM-dependent methyltransferase [Gemella haemolysans ATCC 10379]
 gi|241864078|gb|EER68457.1| SAM-dependent methyltransferase [Gemella haemolysans ATCC 10379]
          Length = 189

 Score = 42.5 bits (99), Expect = 0.095,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 9/93 (9%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYK 82
           LL++VI         V++DAT G G  +    K  +  V A D    A+      + + +
Sbjct: 11  LLKEVID-----KNSVVVDATAGNGNDTLFLAKTSAKKVYAFDIQELAIENTTRLIEEAE 65

Query: 83  --EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
             ++  +   +  +   Y+ D  +  VVF+LG 
Sbjct: 66  LTDKCEIVLDSHFEFDKYIDDT-IRAVVFNLGY 97


>gi|289167555|ref|YP_003445824.1| hypothetical protein smi_0709 [Streptococcus mitis B6]
 gi|288907122|emb|CBJ21956.1| conserved hypothetical protein [Streptococcus mitis B6]
          Length = 167

 Score = 42.5 bits (99), Expect = 0.096,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 10/91 (10%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82
           L +V+         +++DAT G  G+ +    K+   V A D    A+   QE +     
Sbjct: 12  LAEVV-----TQDDIVVDATMGN-GHDTLFLAKLAKQVYAFDIQEQALEKTQERLNQAGM 65

Query: 83  EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
               L       L  +V +    G+ F+LG 
Sbjct: 66  TNAQLILQGHETLDQFVTEAKA-GI-FNLGY 94


>gi|284042473|ref|YP_003392813.1| methyltransferase type 11 [Conexibacter woesei DSM 14684]
 gi|283946694|gb|ADB49438.1| Methyltransferase type 11 [Conexibacter woesei DSM 14684]
          Length = 249

 Score = 42.5 bits (99), Expect = 0.098,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 25/50 (50%)

Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77
          +I LL+  PG  ++DA  G G Y  +  + G     +D  P A++  ++ 
Sbjct: 43 MIELLDLRPGTTVVDAGCGFGRYCAALLEHGMEATGIDISPAAIAEAEKR 92


>gi|168214958|ref|ZP_02640583.1| conserved hypothetical protein [Clostridium perfringens CPE str.
           F4969]
 gi|170713598|gb|EDT25780.1| conserved hypothetical protein [Clostridium perfringens CPE str.
           F4969]
          Length = 183

 Score = 42.5 bits (99), Expect = 0.098,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 5/76 (6%)

Query: 39  VILDATFGAGGYSRSFC-KMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD 97
           + +DAT G  G+   F  ++   V A D    AV+  +      KE   +   +    + 
Sbjct: 25  IAIDATLGN-GHDCDFLSELFKKVYAFDIQEEAVNSYK---SKNKENIEVILDSHENFET 80

Query: 98  YVPDKGVDGVVFDLGV 113
           Y+ ++ VD +V++LG 
Sbjct: 81  YIKEENVDCIVYNLGY 96


>gi|313887999|ref|ZP_07821677.1| putative rRNA methylase [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845954|gb|EFR33337.1| putative rRNA methylase [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 184

 Score = 42.5 bits (99), Expect = 0.099,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 7/79 (8%)

Query: 37  GKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETMRDYKEQFSLFQATFS 93
           GK+ +DAT G G  +    K       V   D    A+S  +  +  Y + +  F  + +
Sbjct: 21  GKIAVDATVGKGNDTLKLLKAVGKDGFVYGFDVQEEALSKARVLLAGY-DNYEFFLDSHA 79

Query: 94  QLQDYVPDKGVDGVVFDLG 112
            +      +  D V+++LG
Sbjct: 80  NIDRL---ESFDLVIYNLG 95


>gi|237806927|ref|YP_002891367.1| sun protein [Tolumonas auensis DSM 9187]
 gi|237499188|gb|ACQ91781.1| sun protein [Tolumonas auensis DSM 9187]
          Length = 433

 Score = 42.5 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 3/87 (3%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDYKEQFSL 87
           LL+P P ++ILDA    GG +    +       ++A+D D   +S   E ++  + + +L
Sbjct: 238 LLDPQPNELILDACAAPGGKTAHILERQPALKQLVAVDSDANRLSRVAENLQRIQLEATL 297

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGVS 114
                S  + +      D ++ D   S
Sbjct: 298 INGDASHPEQWWQGPQFDRILLDAPCS 324


>gi|157822011|ref|NP_001101374.1| trimethylguanosine synthase [Rattus norvegicus]
 gi|143587061|sp|P85107|TGS1_RAT RecName: Full=Trimethylguanosine synthase; AltName: Full=Nuclear
           receptor coactivator 6-interacting protein; AltName:
           Full=PRIP-interacting protein with methyltransferase
           motif; Short=PIMT; Short=PIPMT
 gi|149060992|gb|EDM11602.1| nuclear receptor coactivator 6 interacting protein (predicted)
           [Rattus norvegicus]
          Length = 850

 Score = 42.5 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 2/68 (2%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96
           +I+DA  G GG +  F   G  VIA+D DP  +   +     Y   ++       F  L 
Sbjct: 687 IIVDAFCGVGGNTIQFALTGKRVIAIDIDPVKIDLARNNAEVYGVADKIEFICGDFLLLA 746

Query: 97  DYVPDKGV 104
             +    V
Sbjct: 747 PCLKADVV 754


>gi|77166463|ref|YP_344988.1| Fmu, rRNA SAM-dependent methyltransferase [Nitrosococcus oceani
           ATCC 19707]
 gi|76884777|gb|ABA59458.1| 16S rRNA m(5)C-967 methyltransferase [Nitrosococcus oceani ATCC
           19707]
          Length = 403

 Score = 42.5 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 3/88 (3%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCGQETMRDYKEQFSL 87
           LL   PG+ +LDA    GG +    ++   +   IALD D   +      ++  + +  +
Sbjct: 210 LLALTPGQRVLDACAAPGGKTSHILELEPQLETLIALDLDATRLERLNSNLKRLQLKAEV 269

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGVSS 115
            Q    Q   +      D ++ D   S 
Sbjct: 270 IQGNALQPDTWWDGIPFDRILLDAPCSG 297


>gi|321451313|gb|EFX63009.1| hypothetical protein DAPPUDRAFT_269241 [Daphnia pulex]
          Length = 253

 Score = 42.5 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 2/68 (2%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96
           +I+D   GAGG S  F      VIA+D DP  +   +     Y   ++       F QL 
Sbjct: 91  LIVDVFCGAGGNSIQFAFKCERVIAIDIDPSKIELARHNASVYGVADRIEFIVGDFFQLA 150

Query: 97  DYVPDKGV 104
             +    V
Sbjct: 151 PSLKADVV 158


>gi|326201088|ref|ZP_08190960.1| Methyltransferase type 11 [Clostridium papyrosolvens DSM 2782]
 gi|325988656|gb|EGD49480.1| Methyltransferase type 11 [Clostridium papyrosolvens DSM 2782]
          Length = 241

 Score = 42.5 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 5/100 (5%)

Query: 26  EKVIALL---NPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82
           ++ +  L      P K +LD   G GGYS    + G NV A+D D   V   +   ++  
Sbjct: 19  KEQLDFLKEIAGKPPKSVLDIACGTGGYSLELDRRGYNVTAVDLDKEMVRRLEVKAKENN 78

Query: 83  EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGD 122
           +     Q    +LQ+ + D   D +VF +G S + ++  +
Sbjct: 79  QSVKFMQGNMLELQNKISD-SFD-LVFCIGNSIVHLENLE 116


>gi|254435259|ref|ZP_05048766.1| ribosomal RNA small subunit methyltransferase B [Nitrosococcus
           oceani AFC27]
 gi|207088370|gb|EDZ65642.1| ribosomal RNA small subunit methyltransferase B [Nitrosococcus
           oceani AFC27]
          Length = 435

 Score = 42.5 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 3/88 (3%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCGQETMRDYKEQFSL 87
           LL   PG+ +LDA    GG +    ++   +   IALD D   +      ++  + +  +
Sbjct: 242 LLALTPGQRVLDACAAPGGKTSHILELEPQLETLIALDLDATRLERLNSNLKRLQLKAEV 301

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGVSS 115
            Q    Q   +      D ++ D   S 
Sbjct: 302 IQGNALQPDTWWDGIPFDRILLDAPCSG 329


>gi|170783539|ref|YP_001742032.1| methyltransferase [Arthrobacter sp. AK-1]
 gi|150035026|gb|ABR67037.1| hypothetical methyltransferase [Arthrobacter sp. AK-1]
          Length = 210

 Score = 42.5 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 8/75 (10%)

Query: 43  ATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYV- 99
            T G G  S+   +    ++V A+D DP  +      +  Y ++  L Q + + L+  + 
Sbjct: 47  GT-GYG--SQLVLEQFCAASVDAVDLDPAMIERAARRLARYGDRVRLAQGSATDLRSALN 103

Query: 100 -PDKGVDGVVFDLGV 113
             D   D V FD G+
Sbjct: 104 AADDDYDAV-FDFGI 117


>gi|254483320|ref|ZP_05096551.1| ribosomal RNA small subunit methyltransferase B [marine gamma
           proteobacterium HTCC2148]
 gi|214036415|gb|EEB77091.1| ribosomal RNA small subunit methyltransferase B [marine gamma
           proteobacterium HTCC2148]
          Length = 433

 Score = 42.5 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 3/82 (3%)

Query: 36  PGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATF 92
           PG+ +LDA    GG S    +       + A+D DP  +   Q+ +     Q SL     
Sbjct: 242 PGERVLDACAAPGGKSCHILELQPALGELTAMDLDPQRLERVQQNLERLGLQASLIAGDG 301

Query: 93  SQLQDYVPDKGVDGVVFDLGVS 114
           +     +  +  D V+ D   S
Sbjct: 302 ANPPPVLAAQSFDKVLVDAPCS 323


>gi|14590712|ref|NP_142782.1| fmu protein [Pyrococcus horikoshii OT3]
 gi|186972907|pdb|2YXL|A Chain A, Crystal Structure Of Ph0851
 gi|3257262|dbj|BAA29945.1| 450aa long hypothetical fmu protein [Pyrococcus horikoshii OT3]
          Length = 450

 Score = 42.5 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 35/87 (40%), Gaps = 12/87 (13%)

Query: 32  LNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ--FS 86
           L+P PG+ ++D     GG   +     K    + A D D        + ++D+ ++    
Sbjct: 255 LDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMR----MKRLKDFVKRMGIK 310

Query: 87  LFQ---ATFSQLQDYVPDKGVDGVVFD 110
           + +       +  + + ++  D V+ D
Sbjct: 311 IVKPLVKDARKAPEIIGEEVADKVLLD 337


>gi|114320671|ref|YP_742354.1| putative rRNA methylase [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227065|gb|ABI56864.1| putative rRNA methylase [Alkalilimnicola ehrlichii MLHE-1]
          Length = 194

 Score = 42.5 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 10/82 (12%)

Query: 41  LDATFGAGGYSRSFCK----MGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQ 94
           +DAT G  G+   F         +V A D  P A++  ++ +R      + +L  A    
Sbjct: 25  VDATAGN-GHDTVFLADQVGASGHVWAFDIQPTALAATRQRLRARGLASRATLVAAGHET 83

Query: 95  LQDYVP---DKGVDGVVFDLGV 113
           L +++P     G+  V+F+LG 
Sbjct: 84  LAEHLPPQVQGGLAAVMFNLGY 105


>gi|188584795|ref|YP_001916340.1| putative rRNA methylase [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179349482|gb|ACB83752.1| putative rRNA methylase [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 190

 Score = 42.5 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 8/86 (9%)

Query: 34  PAPGKVILDATFGAGGY-SRSFCKMGSN---VIALDRDPFAVSCGQETMRDYK--EQFSL 87
            + G  ++DAT G  G+ +        +   V A D    A+    + ++     E+  L
Sbjct: 21  ISQGDRVVDATCGN-GHDTEYLANRVGDQGLVYAFDIQKQALETTWKRLQQEGLHERVRL 79

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGV 113
                 +L + V +  V  V+F+LG 
Sbjct: 80  LNKGHEKLIEDV-EGPVSCVMFNLGY 104


>gi|127514666|ref|YP_001095863.1| sun protein [Shewanella loihica PV-4]
 gi|126639961|gb|ABO25604.1| sun protein [Shewanella loihica PV-4]
          Length = 427

 Score = 42.5 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 2/86 (2%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88
           LL P   ++ILDA    GG S    +     +++A+D D   +   Q+ +     +  L 
Sbjct: 236 LLAPEANELILDACAAPGGKSCHLLESQPSIDLVAVDFDAKRLERVQQNLDRLSLKAKLV 295

Query: 89  QATFSQLQDYVPDKGVDGVVFDLGVS 114
               +++  +      D ++ D   S
Sbjct: 296 HGDAAKIDSWWQGDKFDRILLDAPCS 321


>gi|302523658|ref|ZP_07276000.1| methyltransferase [Streptomyces sp. AA4]
 gi|302432553|gb|EFL04369.1| methyltransferase [Streptomyces sp. AA4]
          Length = 258

 Score = 42.1 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 7/91 (7%)

Query: 23  VLLEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETM--- 78
           VL ++++A L P P   +LD   G  G+ S    ++G +V+ LD     +S  ++ +   
Sbjct: 32  VLHQQLLAHL-PPPPATVLDV-GGGAGHQSFPLARLGYDVVLLDSSDAMLSMAEQRLAAE 89

Query: 79  -RDYKEQFSLFQATFSQLQDYVPDKGVDGVV 108
             + +E+  L ++        V  +  D V+
Sbjct: 90  SAEVRERVRLVRSRGEDAVAAVAGQKFDAVL 120


>gi|313114641|ref|ZP_07800148.1| acetyltransferase, GNAT family [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310623044|gb|EFQ06492.1| acetyltransferase, GNAT family [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 288

 Score = 42.1 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 6/79 (7%)

Query: 41  LDATFGAGGYSRSFC---KMGSNVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQ 94
           +DAT G GG +   C        V+  D    A++  ++ +        ++ L   + + 
Sbjct: 125 IDATCGNGGDTAFLCGITAPEGKVVGFDVQEAAIASTRKHLEQLGVPAARYELHCQSHAD 184

Query: 95  LQDYVPDKGVDGVVFDLGV 113
           L   V     D V+F+ G 
Sbjct: 185 LLQVVQPGTADAVMFNFGW 203


>gi|114045538|ref|YP_736088.1| sun protein [Shewanella sp. MR-7]
 gi|113886980|gb|ABI41031.1| sun protein [Shewanella sp. MR-7]
          Length = 429

 Score = 42.1 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 36/86 (41%), Gaps = 2/86 (2%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQFSLF 88
           LL P   +++LDA    GG S    ++  +  ++A+D D   +   Q+ +     +  + 
Sbjct: 236 LLAPQANELVLDACAAPGGKSCHLLELEPSIQLVAVDFDAKRLERVQQNLDRLSLKAEVI 295

Query: 89  QATFSQLQDYVPDKGVDGVVFDLGVS 114
               + +  +   +  D ++ D   S
Sbjct: 296 HGDAANIDSWWQGEQFDRILLDAPCS 321


>gi|117918492|ref|YP_867684.1| sun protein [Shewanella sp. ANA-3]
 gi|117610824|gb|ABK46278.1| sun protein [Shewanella sp. ANA-3]
          Length = 429

 Score = 42.1 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 36/86 (41%), Gaps = 2/86 (2%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQFSLF 88
           LL P   +++LDA    GG S    ++  +  ++A+D D   +   Q+ +     +  + 
Sbjct: 236 LLAPQANELVLDACAAPGGKSCHLLELEPSIQLVAVDFDAKRLERVQQNLDRLSLKAEVI 295

Query: 89  QATFSQLQDYVPDKGVDGVVFDLGVS 114
               + +  +   +  D ++ D   S
Sbjct: 296 HGDAANIDSWWQGEQFDRILLDAPCS 321


>gi|325265811|ref|ZP_08132497.1| rRNA methyltransferase [Kingella denitrificans ATCC 33394]
 gi|324982449|gb|EGC18075.1| rRNA methyltransferase [Kingella denitrificans ATCC 33394]
          Length = 222

 Score = 42.1 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 29/94 (30%), Gaps = 9/94 (9%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYK--EQFSL 87
              G  ++D T G  G+              V A D    A+   +  + ++    + +L
Sbjct: 40  IREGDCVMDGTAGN-GHDTLLLAQCVGETGRVFAFDIQAAAIEATRARLAEHGLLPRVTL 98

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCG 121
            Q        Y+    +   VF+ G      D  
Sbjct: 99  IQDGHQHAAQYIRQP-LRAAVFNFGYL-PHGDKN 130


>gi|160881322|ref|YP_001560290.1| methyltransferase type 11 [Clostridium phytofermentans ISDg]
 gi|160429988|gb|ABX43551.1| Methyltransferase type 11 [Clostridium phytofermentans ISDg]
          Length = 247

 Score = 42.1 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 38/94 (40%), Gaps = 5/94 (5%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSL 87
            +  L    GK ILD   G GGYSR   + G+ V A+D   F ++      ++     + 
Sbjct: 35  TLQQLGNVSGKRILDLGCGEGGYSRELAQRGALVTAIDCSEFFINYSTNKAKEQGLHITH 94

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCG 121
           F      L D   D   D V+     S M +DC 
Sbjct: 95  FIRNSCDLYDI-QDNYFDIVL----CSMMLMDCE 123


>gi|308500069|ref|XP_003112220.1| hypothetical protein CRE_29769 [Caenorhabditis remanei]
 gi|308268701|gb|EFP12654.1| hypothetical protein CRE_29769 [Caenorhabditis remanei]
          Length = 571

 Score = 42.1 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 42/115 (36%), Gaps = 18/115 (15%)

Query: 42  DATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQDYV 99
           DA  G GG +  F   G++VIA+D DP  + C +E  R Y   +      A F  +    
Sbjct: 399 DAFTGVGGNAIQFALRGAHVIAIDMDPVRLKCARENARVYGVADYIDFICADFFDVAATW 458

Query: 100 P-----DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS--CSGISASDV 147
                    VD V       S          S+ KS   D+      +GI   DV
Sbjct: 459 AADKKLAPKVDAVFL-----SPPWGGP----SYLKSKEFDLATGCCPNGIDIFDV 504


>gi|15668567|ref|NP_247365.1| cobalamin biosynthesis precorrin-8W decarboxylase CbiT
           [Methanocaldococcus jannaschii DSM 2661]
 gi|2495954|sp|Q57836|CBIT_METJA RecName: Full=Probable cobalt-precorrin-6Y C(15)-methyltransferase
           [decarboxylating]
 gi|1591095|gb|AAB98376.1| cobalamin biosynthesis precorrin-8W decarboxylase (cbiT)
           [Methanocaldococcus jannaschii DSM 2661]
          Length = 183

 Score = 42.1 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 5/100 (5%)

Query: 6   CKTMSSAIHHTIGDHVPVLLEKV----IALLNPAPGKVILDATFGAGGYSRSFCKMGSNV 61
            K M         + VP+  E++    I  LN     V++D   G+GG +    K    V
Sbjct: 1   MKYMIPDEEFIRREGVPITKEEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAKRCKFV 60

Query: 62  IALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQLQDYVP 100
            A+D    A+   ++ +  +  +   + +     + D + 
Sbjct: 61  YAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDKLE 100


>gi|317051158|ref|YP_004112274.1| type 11 methyltransferase [Desulfurispirillum indicum S5]
 gi|316946242|gb|ADU65718.1| Methyltransferase type 11 [Desulfurispirillum indicum S5]
          Length = 268

 Score = 42.1 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 38/104 (36%), Gaps = 11/104 (10%)

Query: 25  LEKV---IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81
           L ++   +  LN   G  ILD   G G +SR   K G  V  LD     ++      +D 
Sbjct: 28  LREIDFLLDELNLPAGSTILDIGCGTGRHSRELAKRGYRVTGLDLSSEMLANAATMAKDA 87

Query: 82  KEQFSLFQATFSQLQDYVPDKGVDGVV----FDLGVSSMQIDCG 121
                   A  +     +P++  D  +      LG+ S Q D  
Sbjct: 88  GMSVQWVHADATSFS--LPEQ-FDAAICLCEGSLGLLS-QTDDP 127


>gi|110802121|ref|YP_698470.1| hypothetical protein CPR_1148 [Clostridium perfringens SM101]
 gi|110682622|gb|ABG85992.1| conserved hypothetical protein [Clostridium perfringens SM101]
          Length = 183

 Score = 42.1 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 5/76 (6%)

Query: 39  VILDATFGAGGYSRSFC-KMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD 97
           + +DAT G  G+   F  ++   V A D    AVS  +      KE   +   +    + 
Sbjct: 25  IAIDATLGN-GHDCDFLSELFKKVYAFDIQEEAVSSYK---SKNKENVEVILDSHENFET 80

Query: 98  YVPDKGVDGVVFDLGV 113
           Y+ ++ VD +V++LG 
Sbjct: 81  YIKEENVDCIVYNLGY 96


>gi|148358673|ref|YP_001249880.1| rRNA methyltransferase [Legionella pneumophila str. Corby]
 gi|296108237|ref|YP_003619938.1| Sun protein [Legionella pneumophila 2300/99 Alcoy]
 gi|148280446|gb|ABQ54534.1| rRNA methyltransferase (SUN protein) [Legionella pneumophila str.
           Corby]
 gi|295650139|gb|ADG25986.1| Sun protein [Legionella pneumophila 2300/99 Alcoy]
          Length = 427

 Score = 42.1 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 3/87 (3%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCGQETMRDYKEQFSL 87
           LL+  PG+ +LDA    GG +    +  S +   +ALD DP  +   ++ +     Q ++
Sbjct: 232 LLSLKPGQRVLDACCAPGGKTCHILEKESGLASCVALDLDPQRLQRVRDNLNRLDLQATV 291

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGVS 114
            Q    + + +      D ++ D   S
Sbjct: 292 VQGDVLEPRSWWDGHPFDRILLDAPCS 318


>gi|305664185|ref|YP_003860473.1| RNA methylase, NOL1/NOP2/sun family [Ignisphaera aggregans DSM
           17230]
 gi|304378754|gb|ADM28593.1| RNA methylase, NOL1/NOP2/sun family [Ignisphaera aggregans DSM
           17230]
          Length = 455

 Score = 42.1 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 4/84 (4%)

Query: 31  LLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQFS 86
           LL+P PG+V++D     GG   +          + A D D   +   QE +         
Sbjct: 260 LLDPKPGEVVIDLCAAPGGKTEHMGELMNNTGIIYAFDIDKTRIKRMQEILNRCGISIVK 319

Query: 87  LFQATFSQLQDYVPDKGVDGVVFD 110
           +F     +  + +     D V+ D
Sbjct: 320 IFNEDARKATEILGRNIADKVLVD 343


>gi|261400430|ref|ZP_05986555.1| putative rRNA methylase [Neisseria lactamica ATCC 23970]
 gi|269209877|gb|EEZ76332.1| putative rRNA methylase [Neisseria lactamica ATCC 23970]
          Length = 188

 Score = 42.1 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 12/95 (12%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMR 79
           LL +V+       G   LD T G  G+   F          V A D  P A++  +  ++
Sbjct: 13  LLRQVL-----PEGGNALDGTAGN-GHDTLFLAQTAGIRGKVWAFDIQPQALNNTRCRLQ 66

Query: 80  DYK-EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
           +       L       L+ YV +  ++  +F+ G 
Sbjct: 67  EAGYSNVRLILDGHENLKQYVSEP-LNAAIFNFGW 100


>gi|148700826|gb|EDL32773.1| mCG18000 [Mus musculus]
          Length = 819

 Score = 42.1 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 2/68 (2%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96
           V++DA  G GG +  F   G  VIA+D DP  +   +     Y   ++       F  L 
Sbjct: 655 VVVDAFCGVGGNTIQFALTGKRVIAIDIDPVKIDLARNNAEVYGVADKIEFICGDFLLLA 714

Query: 97  DYVPDKGV 104
             +    V
Sbjct: 715 PCLKADVV 722


>gi|227496324|ref|NP_473430.3| trimethylguanosine synthase [Mus musculus]
 gi|143811468|sp|Q923W1|TGS1_MOUSE RecName: Full=Trimethylguanosine synthase; AltName: Full=Nuclear
           receptor coactivator 6-interacting protein; AltName:
           Full=PRIP-interacting protein with methyltransferase
           motif; Short=PIMT; Short=PIPMT
 gi|123228825|emb|CAM17201.1| trimethylguanosine synthase homolog (S. cerevisiae) [Mus musculus]
 gi|148673771|gb|EDL05718.1| nuclear receptor coactivator 6 interacting protein [Mus musculus]
          Length = 853

 Score = 42.1 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 2/68 (2%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96
           V++DA  G GG +  F   G  VIA+D DP  +   +     Y   ++       F  L 
Sbjct: 685 VVVDAFCGVGGNTIQFALTGKRVIAIDIDPVKIDLARNNAEVYGIADKIEFICGDFLLLA 744

Query: 97  DYVPDKGV 104
             +    V
Sbjct: 745 PCLKADVV 752


>gi|20071722|gb|AAH26368.1| Tgs1 protein [Mus musculus]
          Length = 342

 Score = 42.1 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 2/68 (2%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96
           V++DA  G GG +  F   G  VIA+D DP  +   +     Y   ++       F  L 
Sbjct: 174 VVVDAFCGVGGNTIQFALTGKRVIAIDIDPVKIDLARNNAEVYGIADKIEFICGDFLLLA 233

Query: 97  DYVPDKGV 104
             +    V
Sbjct: 234 PCLKADVV 241


>gi|49903612|gb|AAH75728.1| Trimethylguanosine synthase homolog (S. cerevisiae) [Mus musculus]
          Length = 853

 Score = 42.1 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 2/68 (2%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96
           V++DA  G GG +  F   G  VIA+D DP  +   +     Y   ++       F  L 
Sbjct: 685 VVVDAFCGVGGNTIQFALTGKRVIAIDIDPVKIDLARNNAEVYGIADKIEFICGDFLLLA 744

Query: 97  DYVPDKGV 104
             +    V
Sbjct: 745 PCLKADVV 752


>gi|15127914|gb|AAK84355.1|AF389908_1 PIMT [Mus musculus]
          Length = 853

 Score = 42.1 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 2/68 (2%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96
           V++DA  G GG +  F   G  VIA+D DP  +   +     Y   ++       F  L 
Sbjct: 685 VVVDAFCGVGGNTIQFALTGKRVIAIDIDPVKIDLARNNAEVYGIADKIEFICGDFLLLA 744

Query: 97  DYVPDKGV 104
             +    V
Sbjct: 745 PCLKADVV 752


>gi|242243021|ref|ZP_04797466.1| rRNA methyltransferase [Staphylococcus epidermidis W23144]
 gi|242233479|gb|EES35791.1| rRNA methyltransferase [Staphylococcus epidermidis W23144]
          Length = 187

 Score = 42.1 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 6/85 (7%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91
                +++DAT G G  +  F +   N  V   D    A+    + ++DY     L Q+ 
Sbjct: 18  INHNSIVIDATCGNGNDTAYFAQHVPNGFVYGFDIQEQAILNTHKKIKDY-SNVKLIQSG 76

Query: 92  FSQLQDYVPDK---GVDGVVFDLGV 113
               + ++P +    +D  +F+LG 
Sbjct: 77  HENAKLHIPAQYHGHIDAAIFNLGY 101


>gi|150401405|ref|YP_001325171.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
          subunit [Methanococcus aeolicus Nankai-3]
 gi|150014108|gb|ABR56559.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
          subunit [Methanococcus aeolicus Nankai-3]
          Length = 187

 Score = 42.1 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 4/66 (6%)

Query: 21 VPVLLEKV----IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQE 76
          VP+  E++    I  L   P  V++D   G+GG +    K    V A+D    A++  ++
Sbjct: 20 VPITKEEIRAVSIGKLQLKPNDVVVDIGCGSGGMTVEIAKRCKFVYAIDGSDNAINTTKK 79

Query: 77 TMRDYK 82
           +  + 
Sbjct: 80 NLERFN 85


>gi|328948779|ref|YP_004366116.1| methyltransferase type 11 [Treponema succinifaciens DSM 2489]
 gi|328449103|gb|AEB14819.1| Methyltransferase type 11 [Treponema succinifaciens DSM 2489]
          Length = 141

 Score = 42.1 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 34/81 (41%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H  V+  KV  LL+P P   ILD   G G YS    + G++V+A D     +   +    
Sbjct: 50  HREVVRPKVTELLSPNPADYILDIACGNGNYSSYLAQRGASVVAFDYSKKMIELAKRRQS 109

Query: 80  DYKEQFSLFQATFSQLQDYVP 100
            Y +Q     A  +  +  + 
Sbjct: 110 QYAKQIEFCVADATNRKSILE 130


>gi|315656323|ref|ZP_07909214.1| methyltransferase domain protein [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|315493325|gb|EFU82925.1| methyltransferase domain protein [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 255

 Score = 42.1 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 34/81 (41%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H  V+  KV  LL+P P   ILD   G G YS    + G++V+A D     +   +    
Sbjct: 50  HREVVRPKVTELLSPNPADYILDIACGNGNYSSYLAQRGASVVAFDYSKKMIELAKRRQS 109

Query: 80  DYKEQFSLFQATFSQLQDYVP 100
            Y +Q     A  +  +  + 
Sbjct: 110 QYAKQIEFCVADATNRKSILE 130


>gi|312864561|ref|ZP_07724792.1| putative rRNA methylase [Streptococcus downei F0415]
 gi|311099688|gb|EFQ57901.1| putative rRNA methylase [Streptococcus downei F0415]
          Length = 182

 Score = 42.1 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 12/92 (13%)

Query: 23  VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR-DY 81
           VL ++ IA          +DAT G G  +     +   V A D    A++  QE +   +
Sbjct: 16  VLAKEAIA----------VDATMGNGNDTAFLAGLVKKVYAFDVQKQALAKTQERLASQH 65

Query: 82  KEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
                L       L  YV +  +   +F+LG 
Sbjct: 66  LTNAELILDGHENLDKYVSEP-IRAAIFNLGY 96


>gi|269976671|ref|ZP_06183648.1| SAM independent family methyltransferase [Mobiluncus mulieris 28-1]
 gi|269935145|gb|EEZ91702.1| SAM independent family methyltransferase [Mobiluncus mulieris 28-1]
          Length = 247

 Score = 42.1 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 34/81 (41%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H  V+  KV  LL+P P   ILD   G G YS    + G++V+A D     +   +    
Sbjct: 42  HREVVRPKVTELLSPNPADYILDIACGNGNYSSYLAQRGASVVAFDYSKKMIELAKRRQS 101

Query: 80  DYKEQFSLFQATFSQLQDYVP 100
            Y +Q     A  +  +  + 
Sbjct: 102 QYAKQIEFCVADATNRKSILE 122


>gi|113968373|ref|YP_732166.1| sun protein [Shewanella sp. MR-4]
 gi|113883057|gb|ABI37109.1| sun protein [Shewanella sp. MR-4]
          Length = 429

 Score = 42.1 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 36/86 (41%), Gaps = 2/86 (2%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQFSLF 88
           LL P   ++ILDA    GG S    ++  +  ++A+D D   +   Q+ +     +  + 
Sbjct: 236 LLAPQANELILDACAAPGGKSCHLLELEPSIQLVAVDFDAKRLERVQQNLDRLSLKAEVI 295

Query: 89  QATFSQLQDYVPDKGVDGVVFDLGVS 114
               + +  +   +  D ++ D   S
Sbjct: 296 HGDAANIDSWWQGEQFDRILLDAPCS 321


>gi|313632956|gb|EFR99886.1| methylase protein [Listeria seeligeri FSL N1-067]
          Length = 191

 Score = 42.1 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 8/86 (9%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK--EQFSL 87
             PG  ++DAT G  G+             +V+  D    A++  +  + +     Q  L
Sbjct: 18  VRPGDYVVDATCGN-GHDTLLLAELVGVNGHVLGFDIQQVAIATTKTRLENAAVSSQVEL 76

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGV 113
             A+ + + +Y     V   +F+LG 
Sbjct: 77  ICASHATIPEY-ATTPVRAAIFNLGY 101


>gi|294787666|ref|ZP_06752910.1| putative rRNA methylase [Simonsiella muelleri ATCC 29453]
 gi|294483959|gb|EFG31642.1| putative rRNA methylase [Simonsiella muelleri ATCC 29453]
          Length = 190

 Score = 42.1 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 32/84 (38%), Gaps = 6/84 (7%)

Query: 35  APGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQ 89
             G + +D T G G  +    ++      V A D    A+   +  +R+     + SL Q
Sbjct: 19  KTGDIAVDGTMGNGNDTLFLAQLVGETGKVYAFDIQAAALLATERRLREADVLTRVSLIQ 78

Query: 90  ATFSQLQDYVPDKGVDGVVFDLGV 113
                L  YVP   V   VF+ G 
Sbjct: 79  VGHENLAQYVPQ-NVAAAVFNFGY 101


>gi|319936229|ref|ZP_08010649.1| SAM independent family methyltransferase [Coprobacillus sp. 29_1]
 gi|319808803|gb|EFW05336.1| SAM independent family methyltransferase [Coprobacillus sp. 29_1]
          Length = 255

 Score = 42.1 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 1/99 (1%)

Query: 3   SKSCKTMSSAIHHTIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV 61
            K+ +   +A+     + H  V+  KV  LL+P P   ILD   G G YS    + G+++
Sbjct: 32  EKNAQFWDNAMGDESNEFHREVVRPKVTELLSPNPADYILDIACGNGNYSSYLAQRGASI 91

Query: 62  IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP 100
           +A D     +   +     Y +Q     A  +  +  + 
Sbjct: 92  VAFDYSKKMIELAKRRQSQYAKQIEFCVADATNRESILE 130


>gi|332652414|ref|ZP_08418159.1| methyltransferase domain protein [Ruminococcaceae bacterium D16]
 gi|332517560|gb|EGJ47163.1| methyltransferase domain protein [Ruminococcaceae bacterium D16]
          Length = 243

 Score = 42.1 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 34/81 (41%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H  V+  KV  LL+P P   ILD   G G YS    + G++V+A D     +   +    
Sbjct: 50  HREVVRPKVTELLSPNPADYILDIACGNGNYSSYLAQRGASVVAFDYSKKMIELAKRRQS 109

Query: 80  DYKEQFSLFQATFSQLQDYVP 100
            Y +Q     A  +  +  + 
Sbjct: 110 QYAKQIEFCVADATDRKSILE 130


>gi|237745702|ref|ZP_04576182.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
 gi|229377053|gb|EEO27144.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
          Length = 255

 Score = 42.1 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 34/81 (41%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H  V+  KV  LL+P P   ILD   G G YS    + G++V+A D     +   +    
Sbjct: 50  HREVVRPKVTELLSPNPADYILDIACGNGNYSSYLAQRGASVVAFDYSKKMIELAKRRQS 109

Query: 80  DYKEQFSLFQATFSQLQDYVP 100
            Y +Q     A  +  +  + 
Sbjct: 110 QYAKQIEFCVADATDRKSILE 130


>gi|168259009|gb|ACA23190.1| SAM independent family methyltransferase [Bifidobacterium
           thermophilum]
          Length = 255

 Score = 42.1 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 34/81 (41%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H  V+  KV  LL+P P   ILD   G G YS    + G++V+A D     +   +    
Sbjct: 50  HREVVRPKVTELLSPNPADYILDIACGNGNYSSYLAQRGASVVAFDYSKKMIELAKRRQS 109

Query: 80  DYKEQFSLFQATFSQLQDYVP 100
            Y +Q     A  +  +  + 
Sbjct: 110 QYAKQIEFCVADATDRKSILE 130


>gi|152971649|ref|YP_001336758.1| 23S rRNA 5-methyluridine methyltransferase [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238896246|ref|YP_002920982.1| 23S rRNA 5-methyluridine methyltransferase [Klebsiella pneumoniae
           NTUH-K2044]
 gi|226725383|sp|A6TD57|RUMA_KLEP7 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|150956498|gb|ABR78528.1| 23S rRNA (uracil-5-)-methyltransferase [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238548564|dbj|BAH64915.1| 23S rRNA (uracil-5-)-methyltransferase [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
          Length = 434

 Score = 42.1 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 33/90 (36%), Gaps = 3/90 (3%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82
           ++   +  L+  P   +LD   G G ++       ++V+ ++  P  V  G+E       
Sbjct: 274 MVRTALEWLDLRPEDRVLDLFCGMGNFTLPLATRAAHVVGVEGVPALVEKGRENAARNGL 333

Query: 83  EQFSLFQATFSQ--LQDYVPDKGVDGVVFD 110
              + F     +   +      G D V+ D
Sbjct: 334 SNVTFFHENLEEDVTRQAWAKHGFDKVLLD 363


>gi|154497882|ref|ZP_02036260.1| hypothetical protein BACCAP_01860 [Bacteroides capillosus ATCC
           29799]
 gi|150272872|gb|EDN00029.1| hypothetical protein BACCAP_01860 [Bacteroides capillosus ATCC
           29799]
          Length = 255

 Score = 42.1 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 34/81 (41%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H  V+  KV  LL+P P   ILD   G G YS    + G++V+A D     +   +    
Sbjct: 50  HREVVRPKVTELLSPNPADYILDIACGNGNYSSYLAQRGASVVAFDYSKKMIELAKRRQS 109

Query: 80  DYKEQFSLFQATFSQLQDYVP 100
            Y +Q     A  +  +  + 
Sbjct: 110 QYAKQIEFCVADATDRKSILE 130


>gi|82470773|gb|ABB77424.1| unknown protein [Clostridiaceae bacterium K10]
          Length = 246

 Score = 42.1 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 34/81 (41%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H  V+  KV  LL+P P   ILD   G G YS    + G++V+A D     +   +    
Sbjct: 50  HREVVRPKVTELLSPNPADYILDIACGNGNYSSYLAQRGASVVAFDYSKKMIELAKRRQS 109

Query: 80  DYKEQFSLFQATFSQLQDYVP 100
            Y +Q     A  +  +  + 
Sbjct: 110 QYAKQIEFCVADATDRKSILE 130


>gi|160944450|ref|ZP_02091678.1| hypothetical protein FAEPRAM212_01960 [Faecalibacterium prausnitzii
           M21/2]
 gi|225019542|ref|ZP_03708734.1| hypothetical protein CLOSTMETH_03495 [Clostridium methylpentosum
           DSM 5476]
 gi|226325675|ref|ZP_03801193.1| hypothetical protein COPCOM_03488 [Coprococcus comes ATCC 27758]
 gi|261366542|ref|ZP_05979425.1| methyltransferase domain protein [Subdoligranulum variabile DSM
           15176]
 gi|283796490|ref|ZP_06345643.1| methyltransferase domain protein [Clostridium sp. M62/1]
 gi|290969249|ref|ZP_06560774.1| methyltransferase domain protein [Megasphaera genomosp. type_1 str.
           28L]
 gi|323141251|ref|ZP_08076150.1| methyltransferase domain protein [Phascolarctobacterium sp. YIT
           12067]
 gi|331004537|ref|ZP_08328006.1| hypothetical protein HMPREF0491_02868 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|82470801|gb|ABB77439.1| unknown [Mitsuokella multacida]
 gi|82523583|emb|CAJ43595.1| hypothetical protein [Roseburia sp. A2-183]
 gi|94016157|emb|CAJ97449.1| hypothetical protein [Butyrivibrio fibrisolvens]
 gi|158444232|gb|EDP21236.1| hypothetical protein FAEPRAM212_01960 [Faecalibacterium prausnitzii
           M21/2]
 gi|224947687|gb|EEG28896.1| hypothetical protein CLOSTMETH_03495 [Clostridium methylpentosum
           DSM 5476]
 gi|225205799|gb|EEG88153.1| hypothetical protein COPCOM_03488 [Coprococcus comes ATCC 27758]
 gi|282571357|gb|EFB76892.1| methyltransferase domain protein [Subdoligranulum variabile DSM
           15176]
 gi|290780755|gb|EFD93358.1| methyltransferase domain protein [Megasphaera genomosp. type_1 str.
           28L]
 gi|291075903|gb|EFE13267.1| methyltransferase domain protein [Clostridium sp. M62/1]
 gi|291530480|emb|CBK96065.1| Methylase involved in ubiquinone/menaquinone biosynthesis
           [Eubacterium siraeum 70/3]
 gi|291557364|emb|CBL34481.1| Methylase involved in ubiquinone/menaquinone biosynthesis
           [Eubacterium siraeum V10Sc8a]
 gi|295090343|emb|CBK76450.1| Methylase involved in ubiquinone/menaquinone biosynthesis
           [Clostridium cf. saccharolyticum K10]
 gi|295100568|emb|CBK98113.1| Methylase involved in ubiquinone/menaquinone biosynthesis
           [Faecalibacterium prausnitzii L2-6]
 gi|295115489|emb|CBL36336.1| Methylase involved in ubiquinone/menaquinone biosynthesis
           [butyrate-producing bacterium SM4/1]
 gi|322414290|gb|EFY05110.1| methyltransferase domain protein [Phascolarctobacterium sp. YIT
           12067]
 gi|330410645|gb|EGG90069.1| hypothetical protein HMPREF0491_02868 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 255

 Score = 42.1 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 34/81 (41%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H  V+  KV  LL+P P   ILD   G G YS    + G++V+A D     +   +    
Sbjct: 50  HREVVRPKVTELLSPNPADYILDIACGNGNYSSYLAQRGASVVAFDYSKKMIELAKRRQS 109

Query: 80  DYKEQFSLFQATFSQLQDYVP 100
            Y +Q     A  +  +  + 
Sbjct: 110 QYAKQIEFCVADATDRKSILE 130


>gi|156379240|ref|XP_001631366.1| predicted protein [Nematostella vectensis]
 gi|156218405|gb|EDO39303.1| predicted protein [Nematostella vectensis]
          Length = 213

 Score = 42.1 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 5/73 (6%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96
           +I+DA  G GG +  F      VIA+D DP  + C +     Y   ++       F Q+ 
Sbjct: 55  LIVDAFCGVGGNAIQFAFTCERVIAIDIDPVKIDCARHNAEIYGVADRIEFVLGDFRQI- 113

Query: 97  DYVPDKGVDGVVF 109
             VP    D +  
Sbjct: 114 --VPQLKADVIFL 124


>gi|326434167|gb|EGD79737.1| hypothetical protein PTSG_10720 [Salpingoeca sp. ATCC 50818]
          Length = 183

 Score = 42.1 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 19  DHVPVLLEKVIALLNPA-PGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQ 75
            H P L +KV+   N    G   LD T GAG + R   K G+ N+I+ D D   +   Q
Sbjct: 112 HHFPALYKKVVKGFNQTFRGNTHLDMTLGAGNHVRHVFKAGAQNIISADGDDSVIDTAQ 170


>gi|322375523|ref|ZP_08050036.1| SAM-dependent methyltransferase, MraW methylase family
           [Streptococcus sp. C300]
 gi|321279786|gb|EFX56826.1| SAM-dependent methyltransferase, MraW methylase family
           [Streptococcus sp. C300]
          Length = 187

 Score = 42.1 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 10/91 (10%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82
           L +V+         +++DAT G  G+ +    K+   V A D    A+   QE +     
Sbjct: 14  LAEVV----TKED-IVVDATMGN-GHDTLFLAKLAKQVYAFDIQEQALEKTQERLDQAGM 67

Query: 83  EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
           +   L       L  +V +    G+ F+LG 
Sbjct: 68  KNAQLILKGHETLDQFVTEAKA-GI-FNLGY 96


>gi|299133709|ref|ZP_07026903.1| dimethyladenosine transferase [Afipia sp. 1NLS2]
 gi|298591545|gb|EFI51746.1| dimethyladenosine transferase [Afipia sp. 1NLS2]
          Length = 283

 Score = 42.1 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 6/61 (9%)

Query: 42  DATF-----GAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95
           DAT      G GG +R+    G+  VIA++RD  A+   ++  R Y  +  +        
Sbjct: 48  DATVIEIGPGPGGLTRALLATGAKRVIAVERDDRAIPALEDIARHYPGRLEIVHGDAIDF 107

Query: 96  Q 96
            
Sbjct: 108 D 108


>gi|224499244|ref|ZP_03667593.1| hypothetical protein LmonF1_05937 [Listeria monocytogenes Finland
           1988]
          Length = 175

 Score = 42.1 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 8/86 (9%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK--EQFSL 87
              G  ++DAT G  G+             +V+  D    A+      +++     Q  L
Sbjct: 18  VRSGDYVVDATCGN-GHDTLLLAELVGVNGHVLGFDIQQLAIDATNTRLKNAGVSSQVEL 76

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGV 113
             A+ +++ +Y   K V   +F+LG 
Sbjct: 77  VCASHARIPEY-TSKPVRAAIFNLGY 101


>gi|297621034|ref|YP_003709171.1| putative rRNA methylase [Waddlia chondrophila WSU 86-1044]
 gi|297376335|gb|ADI38165.1| putative rRNA methylase [Waddlia chondrophila WSU 86-1044]
          Length = 204

 Score = 41.7 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 33/100 (33%), Gaps = 13/100 (13%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKMG------SNVIALDRDPFAVSCGQETM-----RDYK 82
             PG +++DAT G  G+                + A D    A++  ++++     +   
Sbjct: 23  VKPGDIVIDATCGN-GHDTLVLAQLALTVESGKLYACDLQKDAINSTKQSLLEKLEKKIV 81

Query: 83  EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGD 122
           E+        S   D +    V    ++LG      D   
Sbjct: 82  ERIFFVHGCHSSFPDEIQPNSVRLAAYNLGYL-PGGDKAK 120


>gi|290893255|ref|ZP_06556242.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
 gi|290557237|gb|EFD90764.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
          Length = 191

 Score = 41.7 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 13/96 (13%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMR 79
           +L KV+      PG  ++DAT G  G+             +V+  D    AV   +  + 
Sbjct: 13  MLRKVV-----RPGDYVIDATCGN-GHDTLLLAELVGINGHVLGFDIQQVAVDATKARLE 66

Query: 80  DYK--EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
           +     Q  L  A+ +++  Y   + V   +F+LG 
Sbjct: 67  NAGVSSQVELVCASHARIPAY-TSRPVRAAIFNLGY 101


>gi|229916468|ref|YP_002885114.1| rRNA methylase [Exiguobacterium sp. AT1b]
 gi|229467897|gb|ACQ69669.1| putative rRNA methylase [Exiguobacterium sp. AT1b]
          Length = 190

 Score = 41.7 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 34/88 (38%), Gaps = 9/88 (10%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK--EQFSL 87
              G+V +D T G  G+   F         +V A D    AV+  +  + +     + ++
Sbjct: 18  IEEGQVAIDMTAGN-GHDTLFLANAVGETGHVYAFDIQSEAVAATKARVEESGVSNRVTV 76

Query: 88  FQATFSQLQDYVPDKG--VDGVVFDLGV 113
              +   +Q  V  +   +   VF+LG 
Sbjct: 77  IHDSHDTVQAVVEKEARPITAAVFNLGY 104


>gi|83416467|gb|ABC18246.1| unknown [Selenomonas ruminantium]
 gi|83416473|gb|ABC18251.1| unknown [Selenomonas ruminantium]
 gi|83416479|gb|ABC18256.1| unknown [Selenomonas ruminantium]
          Length = 184

 Score = 41.7 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 34/81 (41%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H  V+  KV  LL+P P   ILD   G G YS    + G++V+A D     +   +    
Sbjct: 50  HREVVRPKVTELLSPNPADYILDIACGNGNYSSYLAQRGASVVAFDYSKKMIELAKRRQS 109

Query: 80  DYKEQFSLFQATFSQLQDYVP 100
            Y +Q     A  +  +  + 
Sbjct: 110 QYAKQIEFCVADATDRKSILE 130


>gi|75859106|ref|XP_868893.1| hypothetical protein AN9511.2 [Aspergillus nidulans FGSC A4]
 gi|40747596|gb|EAA66752.1| hypothetical protein AN9511.2 [Aspergillus nidulans FGSC A4]
          Length = 187

 Score = 41.7 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 5/88 (5%)

Query: 27  KVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMRDYK-- 82
           + +A  +P   K+++D   GAGG + +F + G    V A+++DP  + C Q     Y   
Sbjct: 81  EQVAHASPPERKILVDVFAGAGGNTIAFARSGHWKRVYAIEKDPATLRCAQHNAEVYGVA 140

Query: 83  EQFSLFQA-TFSQLQDYVPDKGVDGVVF 109
           ++ + FQ   F  L+  + D     V+F
Sbjct: 141 DKITWFQGDCFDILKSQLKDLAPYSVLF 168


>gi|324993678|gb|EGC25597.1| rRNA methylase [Streptococcus sanguinis SK405]
 gi|324995009|gb|EGC26922.1| rRNA methylase [Streptococcus sanguinis SK678]
 gi|325696334|gb|EGD38225.1| rRNA methylase [Streptococcus sanguinis SK160]
 gi|327490109|gb|EGF21897.1| rRNA methylase [Streptococcus sanguinis SK1058]
          Length = 183

 Score = 41.7 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 34/92 (36%), Gaps = 6/92 (6%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82
           +    +A +       ++DAT G  G+ +    ++   V A D    AV   ++ + +  
Sbjct: 7   MAHAFLAEVVTKED-TVVDATMGN-GHDTLFLAQLAKQVYAFDIQEQAVEKTRQRLSEAG 64

Query: 83  -EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
            +   L  +    L  Y         +F+LG 
Sbjct: 65  LDNAQLILSGHESLDQYTDHFK--AAIFNLGY 94


>gi|292654489|ref|YP_003534386.1| membrane protein [Haloferax volcanii DS2]
 gi|291371304|gb|ADE03531.1| membrane protein [Haloferax volcanii DS2]
          Length = 207

 Score = 41.7 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 13/84 (15%), Positives = 31/84 (36%), Gaps = 3/84 (3%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83
           + ++ + +L+   G  +LD   G G  +    +   +V  LD+    +    E    + E
Sbjct: 33  MRDEALEMLDIQQGDRVLDVGCGTGFGTEGLLRYTDDVHGLDQSIHQMQKAWEKFGKHDE 92

Query: 84  QFSLFQATFSQLQDYVPDKGVDGV 107
               ++    +L     +   D +
Sbjct: 93  -VRFYRGDAERLP--FAEDSFDVI 113


>gi|242015860|ref|XP_002428565.1| prip interacting protein. pimt, putative [Pediculus humanus
           corporis]
 gi|212513199|gb|EEB15827.1| prip interacting protein. pimt, putative [Pediculus humanus
           corporis]
          Length = 553

 Score = 41.7 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96
           +++DA  G GG S  F      VIA+D DP  +   +   R Y   ++       F QL 
Sbjct: 393 IVIDAFCGVGGNSIQFAFTCERVIAIDIDPNKIKLAKHNARIYGVEDRIEFIIGDFKQLA 452


>gi|284802054|ref|YP_003413919.1| hypothetical protein LM5578_1809 [Listeria monocytogenes 08-5578]
 gi|284995196|ref|YP_003416964.1| hypothetical protein LM5923_1761 [Listeria monocytogenes 08-5923]
 gi|284057616|gb|ADB68557.1| hypothetical protein LM5578_1809 [Listeria monocytogenes 08-5578]
 gi|284060663|gb|ADB71602.1| hypothetical protein LM5923_1761 [Listeria monocytogenes 08-5923]
          Length = 191

 Score = 41.7 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 8/86 (9%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK--EQFSL 87
              G  ++DAT G  G+             +V+  D    A+      +++     Q  L
Sbjct: 18  VRSGDYVVDATCGN-GHDTLLLAELVGVNGHVLGFDIQQLAIDATNTRLKNAGVSSQVEL 76

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGV 113
             A+ +++ +Y   K V   +F+LG 
Sbjct: 77  VCASHARIPEY-TSKPVRAAIFNLGY 101


>gi|152978309|ref|YP_001343938.1| methyltransferase type 11 [Actinobacillus succinogenes 130Z]
 gi|150840032|gb|ABR74003.1| Methyltransferase type 11 [Actinobacillus succinogenes 130Z]
          Length = 257

 Score = 41.7 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 60/166 (36%), Gaps = 22/166 (13%)

Query: 22  PVLLEKVIA------LLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCG 74
           PV L  ++       LL    GK +LD   G G + R + + G++ V  +D     +   
Sbjct: 24  PVSLNNIVEKPTMLSLLPDLTGKKLLDLACGTGEHLRLYLERGADFVTGMDLSAAMLRQA 83

Query: 75  QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
           ++ + D++  F+L+QA+       + +   D +      SS         F + +  P  
Sbjct: 84  EKNLADFRPHFTLYQASMEDFSQ-LAESEFDVI-----TSSFA-------FHYVQDFPKL 130

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           +R   + +     +  +    +       G E+         V  R
Sbjct: 131 LRAVATKLKPQGTLVFSQEHPIVTAYK--GGERWEKNAQKEQVAYR 174


>gi|303228827|ref|ZP_07315641.1| methyltransferase domain protein [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302516539|gb|EFL58467.1| methyltransferase domain protein [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 191

 Score = 41.7 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 10/88 (11%)

Query: 35  APGKVILDATFGAGGYSRSFC----KMGSNVIALDRDPFAVSCGQETMRDYKEQ----FS 86
               V++DAT G  G+   +     +   ++  +D    AVS  +E +   K Q     +
Sbjct: 20  KSASVVVDATCGN-GHDLLYLAERAQSECHLYGIDIQEQAVSASRELLASKKLQSNVTIT 78

Query: 87  LFQATFSQ-LQDYVPDKGVDGVVFDLGV 113
               +    L   + +  +D ++F+LG 
Sbjct: 79  FLHNSHDIALHQEIKENTIDLIIFNLGY 106


>gi|242094784|ref|XP_002437882.1| hypothetical protein SORBIDRAFT_10g004380 [Sorghum bicolor]
 gi|241916105|gb|EER89249.1| hypothetical protein SORBIDRAFT_10g004380 [Sorghum bicolor]
          Length = 209

 Score = 41.7 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 67/209 (32%), Gaps = 38/209 (18%)

Query: 14  HHTIGDHV-PVLLEKVIALLNPAPGKVILD-----ATFGAGGYSRSFCKMGSNVIALDRD 67
            +  G H+   +L       +   GKV+ D      T   G    +  +   +V+ +D D
Sbjct: 25  QYPTGPHIASRMLYTAENSFDDITGKVVADFGCGCGTLAVG---SALLEA-EHVLGIDID 80

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF 127
           P ++   QE   D +    L  +    L   +    VD VV                F  
Sbjct: 81  PQSLELAQENAADLELDIDLVWSDIKNL--NLKGVHVDTVVM----------NPP--FGT 126

Query: 128 QKSGPLDMRMSCSGIS-ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQ 186
           +++G  DM     G+  AS  V   +       +  +      +R A  + + R   P  
Sbjct: 127 RRNGA-DMEFLSMGLKVASQAVYSLHKTSTREHIKKMALRGCNARSAEVLCELRYGLP-- 183

Query: 187 TTQDLSSLIQKTVYFSKNNRIHPATRSFQ 215
                     +T  F K   +  A   ++
Sbjct: 184 ----------QTYKFHKKKEVDIAVDLWR 202


>gi|299823066|ref|ZP_07054952.1| rRNA methyltransferase [Listeria grayi DSM 20601]
 gi|299816595|gb|EFI83833.1| rRNA methyltransferase [Listeria grayi DSM 20601]
          Length = 187

 Score = 41.7 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 35/86 (40%), Gaps = 6/86 (6%)

Query: 33  NPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK--EQFSL 87
              PG  ++D T G G  +    ++      V A D    A+   ++ + +       +L
Sbjct: 17  AIRPGGQVIDGTCGNGNDTVLLAELVGENGQVFAFDIQSQAIEATRQKLTEQNLLAPVTL 76

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGV 113
            Q +  Q+ ++V    +   +F+LG 
Sbjct: 77  IQDSHDQISEHVKTP-IQAAIFNLGY 101


>gi|229579627|ref|YP_002838026.1| Fmu (Sun) domain protein [Sulfolobus islandicus Y.G.57.14]
 gi|228010342|gb|ACP46104.1| Fmu (Sun) domain protein [Sulfolobus islandicus Y.G.57.14]
          Length = 339

 Score = 41.7 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQF 85
           V  LL+P P + I+D T  AGG      ++     +I  D     V   ++ +     + 
Sbjct: 162 VAHLLDPQPNEKIVDMTAYAGGKLSHIYQLEPRVKLIGFDHTEKKVEKLRDLVNKMGMRI 221

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            +++A    L +    + VD V+ D   S
Sbjct: 222 EIYKADSRYLYEDYNIRDVDKVIIDPPCS 250


>gi|261346903|ref|ZP_05974547.1| ribosomal RNA small subunit methyltransferase B [Providencia
           rustigianii DSM 4541]
 gi|282564970|gb|EFB70505.1| ribosomal RNA small subunit methyltransferase B [Providencia
           rustigianii DSM 4541]
          Length = 428

 Score = 41.7 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 41/89 (46%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85
              LL+P  G  ILD     GG +    ++    +V+A+D D   +   +E ++  K+Q 
Sbjct: 238 CAELLSPVDGDSILDLCAAPGGKTTHILELAPKAHVLAVDIDDSRLKRVKENLQRLKQQA 297

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            + Q   ++ +++   +  D ++ D   S
Sbjct: 298 IVIQGDGTKPEEWAHGQQFDRILLDAPCS 326


>gi|306831998|ref|ZP_07465153.1| rRNA methylase [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|306834120|ref|ZP_07467240.1| rRNA methylase [Streptococcus bovis ATCC 700338]
 gi|325978945|ref|YP_004288661.1| rRNA methylase [Streptococcus gallolyticus subsp. gallolyticus ATCC
           BAA-2069]
 gi|304423693|gb|EFM26839.1| rRNA methylase [Streptococcus bovis ATCC 700338]
 gi|304425924|gb|EFM29041.1| rRNA methylase [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|325178873|emb|CBZ48917.1| rRNA methylase (SAM-dependent methyltransferase superfamily)
           [Streptococcus gallolyticus subsp. gallolyticus ATCC
           BAA-2069]
          Length = 187

 Score = 41.7 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 7/90 (7%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-E 83
           L +V+     A     +DAT G G  +    +    V A D    A+   +E +   +  
Sbjct: 13  LAEVLDEQAIA-----VDATMGNGNDTAFLAQHAKEVYAFDVQEQALQSTKERLEKQEIH 67

Query: 84  QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
              L       +  YV    +   +F+LG 
Sbjct: 68  NAHLILDGHQHIDHYVNQP-IRAAIFNLGY 96


>gi|118497214|ref|YP_898264.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis
           subsp. novicida U112]
 gi|194323513|ref|ZP_03057290.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Francisella tularensis
           subsp. novicida FTE]
 gi|143581148|sp|A0Q5J5|RUMA_FRATN RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|118423120|gb|ABK89510.1| RNA methyltransferase, trmA family [Francisella novicida U112]
 gi|194322368|gb|EDX19849.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Francisella tularensis
           subsp. novicida FTE]
          Length = 449

 Score = 41.7 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 56/162 (34%), Gaps = 24/162 (14%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83
           ++++ I LL+ +    I+D   G G ++    +    VI ++ +P  V   +ET  +   
Sbjct: 289 MIKRAIELLDISENDSIIDLFCGLGNFTLPISQHAKTVIGVEGEPTMVKRAKETADN--N 346

Query: 84  QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGIS 143
             +      + L +                 S +       F + K     M +      
Sbjct: 347 NITNVNFYAANLFE-----------------SFEDKEWFNNFEYNK-----MLLDPPRAG 384

Query: 144 ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           A +V N     ++ RI+ +  +    +R A  +V  +     
Sbjct: 385 AQEVCNNIEKFNVKRIVYVSCDTATLARDAGILVNNKDYKLI 426


>gi|145592777|ref|YP_001157074.1| methyltransferase type 11 [Salinispora tropica CNB-440]
 gi|145302114|gb|ABP52696.1| Methyltransferase type 11 [Salinispora tropica CNB-440]
          Length = 266

 Score = 41.7 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 4/84 (4%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSL 87
            + LL    G+ +LD   G G Y+      G+ VI LD+ P  V   +E +      F +
Sbjct: 66  CLRLLGEVAGRTVLDVACGPGLYAEELVARGARVIGLDQSPRMVHLCRERV--PSGVFHV 123

Query: 88  FQATFSQLQDYVPDKGVDGVVFDL 111
                ++   ++PD+ VD V+F L
Sbjct: 124 H--DLAERLHWLPDESVDLVLFAL 145


>gi|18977038|ref|NP_578395.1| nol1-nop2-sun family putative nucleolar protein IV [Pyrococcus
           furiosus DSM 3638]
 gi|18892673|gb|AAL80790.1| putative nucleolar protein IV (nol1-nop2-sun family) [Pyrococcus
           furiosus DSM 3638]
          Length = 452

 Score = 41.7 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 33/87 (37%), Gaps = 12/87 (13%)

Query: 32  LNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ---- 84
           L+P PG+V++D     GG   +     K    + A D D        + ++D+  +    
Sbjct: 256 LDPKPGEVVVDLAAAPGGKTTHMAELMKNRGKIFAFDIDKAR----MKRLKDFVSRMGIK 311

Query: 85  -FSLFQATFSQLQDYVPDKGVDGVVFD 110
                     +  + + ++  D V+ D
Sbjct: 312 IVKPIVKDARKAPEILGEEVADRVMLD 338


>gi|303232176|ref|ZP_07318879.1| methyltransferase domain protein [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302513282|gb|EFL55321.1| methyltransferase domain protein [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 191

 Score = 41.7 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 10/88 (11%)

Query: 35  APGKVILDATFGAGGYSRSFC----KMGSNVIALDRDPFAVSCGQETMRDYKEQ----FS 86
               V++DAT G  G+   +     +   ++  +D    AVS  +E +   K Q     +
Sbjct: 20  KSASVVVDATCGN-GHDLLYLAERAQSECHLYGIDIQEQAVSASRELLASKKLQSNVTIT 78

Query: 87  LFQATFSQ-LQDYVPDKGVDGVVFDLGV 113
               +    L   + +  +D ++F+LG 
Sbjct: 79  FLHNSHDIALHQEIKENTIDLIIFNLGY 106


>gi|331266078|ref|YP_004325708.1| hypothetical protein SOR_0705 [Streptococcus oralis Uo5]
 gi|326682750|emb|CBZ00367.1| conserved hypothetical protein [Streptococcus oralis Uo5]
          Length = 185

 Score = 41.7 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 10/91 (10%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82
           L +V+         +++DAT G  G+ +    K+   V A D    A+   QE +     
Sbjct: 12  LAEVV----TKED-IVVDATMGN-GHDTLFLAKLAKQVYAFDIQDKALEKTQERLDQAGM 65

Query: 83  EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
               L       L  +V +    G+ F+LG 
Sbjct: 66  TNAQLILQGHETLDQFVTEAKA-GI-FNLGY 94


>gi|14520982|ref|NP_126457.1| nucleolar protein [Pyrococcus abyssi GE5]
 gi|5458199|emb|CAB49688.1| Nucleolar protein from the nop2 family [Pyrococcus abyssi GE5]
          Length = 311

 Score = 41.7 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 37/100 (37%), Gaps = 10/100 (10%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETMRDYKE-QFS 86
            L+P PG+++ D     GG +    ++  N   + A D D   +   +  +         
Sbjct: 109 ALDPKPGEIVADMAAAPGGKTSYLAQLMENKGVIYAFDVDEDRLKETRINLSRLGVLNVI 168

Query: 87  LFQATFSQLQDYVPDKGVDGVVFDL---GVSSMQIDCGDR 123
           LF ++   +     +   D ++ D    G  ++     +R
Sbjct: 169 LFHSSSLYIDQLGIE--FDKILLDAPCTGSGTIH-KNPER 205


>gi|332522818|ref|ZP_08399070.1| ribosomal RNA large subunit methyltransferase A family protein
           [Streptococcus porcinus str. Jelinkova 176]
 gi|332314082|gb|EGJ27067.1| ribosomal RNA large subunit methyltransferase A family protein
           [Streptococcus porcinus str. Jelinkova 176]
          Length = 273

 Score = 41.7 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 46/105 (43%), Gaps = 10/105 (9%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETM 78
           H+   LE + + L P     ILD   G G YSR+  +  ++ ++A D    ++    +  
Sbjct: 74  HI---LEAISSYLQPDKNTTILDVACGEGYYSRALAQTPNHQILAFDLSKESILLAAK-- 128

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDR 123
           +D   + + F    ++L   + D+ VD ++ D+  S        R
Sbjct: 129 KDLLNRVTWFVGDLAKLP--LADQSVD-IILDV-FSPAHYQEFQR 169


>gi|298204756|emb|CBI25254.3| unnamed protein product [Vitis vinifera]
          Length = 310

 Score = 41.7 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 2/66 (3%)

Query: 37  GKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQ 94
           G  ++D   G GG +  F KM  +V+A+D DP  V       + Y   +        F Q
Sbjct: 146 GGCVIDCFSGVGGNTIQFAKMCHHVVAIDLDPHKVELAFNNAKIYGVEDYIDFIIGDFFQ 205

Query: 95  LQDYVP 100
           L   + 
Sbjct: 206 LASSLK 211


>gi|255027475|ref|ZP_05299461.1| hypothetical protein LmonocytFSL_16008 [Listeria monocytogenes FSL
           J2-003]
          Length = 115

 Score = 41.7 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 8/86 (9%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK--EQFSL 87
              G  ++DAT G  G+             +V+  D    A+      +++     Q  L
Sbjct: 18  VRSGDYVVDATCGN-GHDTLLLAELVGVNGHVLGFDIQQLAIDATNTRLKNAGVSSQVEL 76

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGV 113
             A+ +++ +Y   K V   +F+LG 
Sbjct: 77  VCASHARIPEY-TSKPVRAAIFNLGY 101


>gi|225443235|ref|XP_002271770.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 248

 Score = 41.7 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 2/66 (3%)

Query: 37  GKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQ 94
           G  ++D   G GG +  F KM  +V+A+D DP  V       + Y   +        F Q
Sbjct: 84  GGCVIDCFSGVGGNTIQFAKMCHHVVAIDLDPHKVELAFNNAKIYGVEDYIDFIIGDFFQ 143

Query: 95  LQDYVP 100
           L   + 
Sbjct: 144 LASSLK 149


>gi|329766161|ref|ZP_08257720.1| putative RNA methylase [Candidatus Nitrosoarchaeum limnia SFB1]
 gi|329137432|gb|EGG41709.1| putative RNA methylase [Candidatus Nitrosoarchaeum limnia SFB1]
          Length = 315

 Score = 41.7 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 10/104 (9%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRD 80
           L   +I L+    G+V+ D   G G    +  +    G + I LD D       +E +  
Sbjct: 166 LTRSMINLIGLKEGEVVCDPFCGTG---TTLLEAESMGIHAIGLDFDEKMFKISKENLDA 222

Query: 81  YKEQFSLFQATFSQLQDYVPDKGVDGVVFDL--GVSSMQIDCGD 122
                 + +  FSQL   + +   DG+V DL  G +S   +  +
Sbjct: 223 NGYNSKIIRGDFSQLTKMIDE--FDGIVTDLPYGTASKSSENPE 264


>gi|308047743|ref|YP_003911309.1| 16S rRNA m(5)C-967 methyltransferase [Ferrimonas balearica DSM
           9799]
 gi|307629933|gb|ADN74235.1| 16S rRNA m(5)C-967 methyltransferase [Ferrimonas balearica DSM
           9799]
          Length = 441

 Score = 41.7 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 3/87 (3%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQFSL 87
           LLN  PG+ +LDA    GG S    +     + ++ALD DP+ ++  Q+ +       +L
Sbjct: 241 LLNAQPGERVLDACAAPGGKSCHILEQQPQLAELVALDVDPWRLTRVQQNLDRLGLTATL 300

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGVS 114
                +  Q +   +  D ++ D   S
Sbjct: 301 KCGDGTDPQSWWDGQAFDRILLDAPCS 327


>gi|256810827|ref|YP_003128196.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Methanocaldococcus fervens AG86]
 gi|256794027|gb|ACV24696.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Methanocaldococcus fervens AG86]
          Length = 180

 Score = 41.7 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 38/97 (39%), Gaps = 5/97 (5%)

Query: 9   MSSAIHHTIGDHVPVLLEKV----IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIAL 64
           M         + +P+  E++    I  LN     V++D   G+GG +    +    V A+
Sbjct: 1   MIPDSEFIRKERIPITKEEIRAVSIGKLNLNKDDVVVDIGCGSGGMTVEIARRCKFVYAI 60

Query: 65  DRDPFAVSCGQETMRDYK-EQFSLFQATFSQLQDYVP 100
           D +  A++  ++ +  +  +   +       + + + 
Sbjct: 61  DYEEEAINLTKQNLAKFNIKNCQVIMGRAEDILNNLE 97


>gi|306829787|ref|ZP_07462976.1| rRNA methylase [Streptococcus mitis ATCC 6249]
 gi|304428138|gb|EFM31229.1| rRNA methylase [Streptococcus mitis ATCC 6249]
          Length = 185

 Score = 41.7 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 10/91 (10%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83
           L +V+         +++DAT G  G+ +    K+   V A D    A+   QE +     
Sbjct: 12  LAEVV----TKED-IVVDATMGN-GHDTLFLAKLAKQVYAFDIQEQALEKTQERLDQAGM 65

Query: 84  -QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
               L       L  +V +    G+ F+LG 
Sbjct: 66  INAQLILQGHETLDQFVTEAKA-GI-FNLGY 94


>gi|225076548|ref|ZP_03719747.1| hypothetical protein NEIFLAOT_01596 [Neisseria flavescens
           NRL30031/H210]
 gi|224952119|gb|EEG33328.1| hypothetical protein NEIFLAOT_01596 [Neisseria flavescens
           NRL30031/H210]
          Length = 441

 Score = 41.7 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 4/92 (4%)

Query: 23  VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQE--TMRD 80
           V++ + + LLNP  G+ I D   G G +S    K G++V+ ++   + V   +E   +  
Sbjct: 281 VMVARAVRLLNPQKGERIADLFCGLGNFSLPLAKSGASVVGIEGADYLVDRARENARLNR 340

Query: 81  YKEQFSL-FQATFSQLQDYVPDKG-VDGVVFD 110
             E  +      F   +  V   G  D ++ D
Sbjct: 341 CAENITFSVADLFDTDEKIVESWGQFDKMLLD 372


>gi|294010470|ref|YP_003543930.1| ubiquinone/menaquinone biosynthesis methyltransferase [Sphingobium
           japonicum UT26S]
 gi|292673800|dbj|BAI95318.1| ubiquinone/menaquinone biosynthesis methyltransferase [Sphingobium
           japonicum UT26S]
          Length = 224

 Score = 41.7 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 64/186 (34%), Gaps = 40/186 (21%)

Query: 26  EKVIALLNPAPGKVILDATFGAGGYSRSFC----KMGSNVIALDRDPFAVSCGQETMRDY 81
           E ++A L P  G+ I+D   G G  S +      +  + VI LD D  A+   +      
Sbjct: 31  EAMLAALAPRGGETIVDIGCGTG--SFALLLKRDEPSARVIGLDPDAEALDIARRKAAAM 88

Query: 82  KEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSS---MQIDCGDRGFSFQKSGPLDMRMS 138
                  Q         +P++  D V     VSS    Q+             PLDM+  
Sbjct: 89  VADVDWRQG----FATDLPEQSADAV-----VSSLVLHQM-------------PLDMK-- 124

Query: 139 CSGISASDVVNQANVKDLTR--ILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196
                A+ +     +       ++   G ++   R+A  +  +R      T  +   ++ 
Sbjct: 125 -----AATLRAMYAILRPGGRLVIADYGRQRGFMRLAFRLTVQRLDGVSDTQPNAEGVLP 179

Query: 197 KTVYFS 202
           + +  +
Sbjct: 180 RLIALA 185


>gi|225024584|ref|ZP_03713776.1| hypothetical protein EIKCOROL_01461 [Eikenella corrodens ATCC
           23834]
 gi|224942735|gb|EEG23944.1| hypothetical protein EIKCOROL_01461 [Eikenella corrodens ATCC
           23834]
          Length = 430

 Score = 41.7 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 4/91 (4%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCG--QETMRDY 81
           L+ + I LL P PG+ I D   G G +S      G+ VI ++  P           +   
Sbjct: 270 LVARAIQLLQPQPGERIADLFCGLGNFSLPIAAAGAQVIGIEGSPELTERASQNARLNHL 329

Query: 82  KEQFSLFQAT-FSQLQDYVPDKG-VDGVVFD 110
            E+     A  F   +  V   G  D ++ D
Sbjct: 330 AERAQFHSADLFQTTEHTVAGWGYFDKILLD 360


>gi|88860599|ref|ZP_01135236.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Pseudoalteromonas
           tunicata D2]
 gi|88817194|gb|EAR27012.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Pseudoalteromonas
           tunicata D2]
          Length = 429

 Score = 41.7 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 2/86 (2%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGSNV--IALDRDPFAVSCGQETMRDYKEQFSLF 88
           L+ P  G+ ILDA    GG +    ++  N+   ALD D   ++  QE +     Q  L 
Sbjct: 239 LMAPQAGERILDACAAPGGKTCHILELADNLAVTALDCDETRLARVQENLSRIGLQAQLL 298

Query: 89  QATFSQLQDYVPDKGVDGVVFDLGVS 114
            A  +    +   +  D ++ D+  S
Sbjct: 299 CADAANPDTWWDKETFDKILLDVPCS 324


>gi|320355149|ref|YP_004196488.1| type 11 methyltransferase [Desulfobulbus propionicus DSM 2032]
 gi|320123651|gb|ADW19197.1| Methyltransferase type 11 [Desulfobulbus propionicus DSM 2032]
          Length = 224

 Score = 41.7 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 2/68 (2%)

Query: 29 IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLF 88
          +  L P PG+ ILDA  G G ++      G+ VI +D     +   ++       +F+  
Sbjct: 34 LEFLAPQPGERILDAGCGTGLFTGDVLDRGAMVIGVDLSVPMLDRARKRAA--GPRFTAL 91

Query: 89 QATFSQLQ 96
           A    L 
Sbjct: 92 CADMGALP 99


>gi|237748134|ref|ZP_04578614.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
 gi|229379496|gb|EEO29587.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
          Length = 250

 Score = 41.7 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 30/54 (55%)

Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77
          + E V+ LL+P PG+ ILD   G G  +    KMG  V+A+D +  AV   ++ 
Sbjct: 23 MGEPVLKLLDPKPGERILDMGCGLGVLAEEMVKMGCEVVAIDVNSQAVEATRQR 76


>gi|209885479|ref|YP_002289336.1| dimethyladenosine transferase [Oligotropha carboxidovorans OM5]
 gi|226732605|sp|B6JGM4|RSMA_OLICO RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|209873675|gb|ACI93471.1| dimethyladenosine transferase [Oligotropha carboxidovorans OM5]
          Length = 282

 Score = 41.7 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 6/55 (10%)

Query: 42  DATF-----GAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSLFQA 90
           D T      G GG +R+    G+  VIA++RD  A+   +E  R Y  +  +   
Sbjct: 48  DVTVIEIGPGPGGLTRALLATGAKRVIAVERDERAIPALEEIARRYPGRLEIIHG 102


>gi|322420924|ref|YP_004200147.1| rRNA methylase [Geobacter sp. M18]
 gi|320127311|gb|ADW14871.1| rRNA methylase [Geobacter sp. M18]
          Length = 195

 Score = 41.7 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 6/85 (7%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDYK--EQFSLF 88
             PG + +DAT G G  +    ++      V A D    A+S  +E +          L 
Sbjct: 26  VRPGDLAVDATCGNGFDTALLAQLAGETGRVWAFDVQARAISATRELLEREGRLANVELL 85

Query: 89  QATFSQLQDYVPDKGVDGVVFDLGV 113
           +    +L ++VP  GV  VVF+LG 
Sbjct: 86  ETGHERLAEFVPQ-GVRAVVFNLGY 109


>gi|254497984|ref|ZP_05110747.1| rRNA methyltransferase (SUN protein) [Legionella drancourtii
           LLAP12]
 gi|254352761|gb|EET11533.1| rRNA methyltransferase (SUN protein) [Legionella drancourtii
           LLAP12]
          Length = 426

 Score = 41.7 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 3/90 (3%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCGQETMRDYKEQ 84
            ++LL   PG  +LDA    GG +    +   N+   +ALD DP  +   QE +     Q
Sbjct: 230 AVSLLALKPGLRLLDACCAPGGKTCHILETEPNLSACVALDVDPKRLIRVQENLTRLNLQ 289

Query: 85  FSLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            +L Q   S    +   +  D ++ D   S
Sbjct: 290 ATLLQGDASTPTTWWDGQLFDRILLDAPCS 319


>gi|288905978|ref|YP_003431200.1| rRNA methylase [Streptococcus gallolyticus UCN34]
 gi|288732704|emb|CBI14278.1| Putative rRNA methylase [Streptococcus gallolyticus UCN34]
          Length = 187

 Score = 41.7 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 7/90 (7%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-E 83
           L +V+     A     +DAT G G  +    +    V A D    A+   +E +   +  
Sbjct: 13  LAEVLDEQAIA-----VDATMGNGNDTAFLAQHTKEVYAFDVQEQALQSTKERLEKQEIH 67

Query: 84  QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
              L       +  YV    +   +F+LG 
Sbjct: 68  NAHLILDGHQHIDHYVNQP-IRAAIFNLGY 96


>gi|261403589|ref|YP_003247813.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Methanocaldococcus vulcanius M7]
 gi|261370582|gb|ACX73331.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Methanocaldococcus vulcanius M7]
          Length = 180

 Score = 41.7 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 38/97 (39%), Gaps = 5/97 (5%)

Query: 9   MSSAIHHTIGDHVPVLLEKV----IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIAL 64
           M    +    + VP+  E++    I  LN     V++D   G+GG +    K    V A+
Sbjct: 1   MIPDENFIRREGVPITKEEIRAVSIGKLNLNKDDVVVDIGCGSGGMTVEIAKRCKFVYAI 60

Query: 65  DRDPFAVSCGQETMRDYK-EQFSLFQATFSQLQDYVP 100
           D    A+   Q+ +  +  +   + +     + D + 
Sbjct: 61  DYLDDAIELTQQNLAKFNIKNCQIIKGRAEDVLDKLK 97


>gi|162457317|ref|YP_001619684.1| methyltransferase [Sorangium cellulosum 'So ce 56']
 gi|161167899|emb|CAN99204.1| Methyltransferase [Sorangium cellulosum 'So ce 56']
          Length = 792

 Score = 41.7 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 3/78 (3%)

Query: 30  ALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQ 89
             L    G VILD   GAGG++      G +V+  D     ++   +  +D  ++ +  Q
Sbjct: 579 ERLGVEKGAVILDLACGAGGHAIEIASRGYSVVGYDLSLAMLARAADEAQDRGQKLNFLQ 638

Query: 90  ATFSQLQDYVPDKGVDGV 107
                +++   ++  DGV
Sbjct: 639 G---DMREMTFEETFDGV 653


>gi|163852351|ref|YP_001640394.1| Fmu (Sun) domain-containing protein [Methylobacterium extorquens
           PA1]
 gi|163663956|gb|ABY31323.1| Fmu (Sun) domain protein [Methylobacterium extorquens PA1]
          Length = 459

 Score = 41.7 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 10/84 (11%)

Query: 35  APGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMRDYKEQFSLF--- 88
            PG+ ++D   G GG S +        +++IA D DP  ++   E +R    Q  +    
Sbjct: 259 KPGETVVDLCAGGGGKSLALAAITGNAAHIIATDADPRRLAPIHERLRRSGAQVEVRTPR 318

Query: 89  --QATFSQLQDYVPDKGVDGVVFD 110
             +A    L D   D  VD V+ D
Sbjct: 319 TGKARADVLADL--DGTVDRVLVD 340


>gi|116873097|ref|YP_849878.1| methylase protein [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|116741975|emb|CAK21099.1| methylase protein [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 191

 Score = 41.7 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 8/86 (9%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK--EQFSL 87
             PG  ++DAT G  G+             +V+  D    A++  +  + +     Q  L
Sbjct: 18  VRPGDYVIDATCGN-GHDTLLLADLVGINGHVLGFDIQQQAINATKTRLENAGVTPQVEL 76

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGV 113
             A+ + +  Y     V   +F+LG 
Sbjct: 77  VCASHAFIPKYATKP-VRAAIFNLGY 101


>gi|109086422|ref|XP_001084320.1| PREDICTED: trimethylguanosine synthase isoform 2 [Macaca mulatta]
          Length = 855

 Score = 41.7 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 2/68 (2%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96
           V++DA  G GG +  F   G  VIA+D DP  ++  +     Y   ++       F  L 
Sbjct: 695 VVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA 754

Query: 97  DYVPDKGV 104
             +    V
Sbjct: 755 ACLKADVV 762


>gi|218531110|ref|YP_002421926.1| Fmu (Sun) domain protein [Methylobacterium chloromethanicum CM4]
 gi|218523413|gb|ACK83998.1| Fmu (Sun) domain protein [Methylobacterium chloromethanicum CM4]
          Length = 449

 Score = 41.3 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 10/84 (11%)

Query: 35  APGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMRDYKEQFSLF--- 88
            PG+ ++D   G GG S +        +++IA D DP  ++   E +R    Q  +    
Sbjct: 249 KPGETVVDLCAGGGGKSLALAAITGNAAHIIATDADPRRLAPIHERLRRSGAQVEVRTPR 308

Query: 89  --QATFSQLQDYVPDKGVDGVVFD 110
             +A    L D   D  VD V+ D
Sbjct: 309 TGKARADVLADL--DGTVDRVLVD 330


>gi|322390058|ref|ZP_08063593.1| rRNA methylase [Streptococcus parasanguinis ATCC 903]
 gi|321143185|gb|EFX38628.1| rRNA methylase [Streptococcus parasanguinis ATCC 903]
          Length = 185

 Score = 41.3 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 10/91 (10%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82
           L +VI         V++DAT G  G+ +    K+   V A D    A++  QE +     
Sbjct: 12  LAEVI----TKED-VVVDATMGN-GHDTVFLAKLAGQVYAFDIQEQALANTQEKLDKLGL 65

Query: 83  EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
           +   L       +  YV        +F+LG 
Sbjct: 66  QHVQLILDGHQHVDQYVETLK--AAIFNLGY 94


>gi|254562098|ref|YP_003069193.1| SUN-family protein, RNA methyltransferase [Methylobacterium
           extorquens DM4]
 gi|254269376|emb|CAX25342.1| putative SUN-family protein, RNA methyltransferase
           [Methylobacterium extorquens DM4]
          Length = 449

 Score = 41.3 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 10/84 (11%)

Query: 35  APGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMRDYKEQFSLF--- 88
            PG+ ++D   G GG S +        +++IA D DP  ++   E +R    Q  +    
Sbjct: 249 KPGETVVDLCAGGGGKSLALAAITGNAAHIIATDADPRRLAPIHERLRRSGAQVEVRTPR 308

Query: 89  --QATFSQLQDYVPDKGVDGVVFD 110
             +A    L D   D  VD V+ D
Sbjct: 309 TGKARADVLADL--DGTVDRVLVD 330


>gi|184159316|ref|YP_001847655.1| putative tellurite resistance protein-related protein
          [Acinetobacter baumannii ACICU]
 gi|332872577|ref|ZP_08440546.1| methyltransferase domain protein [Acinetobacter baumannii
          6014059]
 gi|183210910|gb|ACC58308.1| putative tellurite resistance protein-related protein
          [Acinetobacter baumannii ACICU]
 gi|322509227|gb|ADX04681.1| SAM-dependent methyltransferase [Acinetobacter baumannii 1656-2]
 gi|323519256|gb|ADX93637.1| putative tellurite resistance protein-related protein
          [Acinetobacter baumannii TCDC-AB0715]
 gi|332739263|gb|EGJ70121.1| methyltransferase domain protein [Acinetobacter baumannii
          6014059]
          Length = 194

 Score = 41.3 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 29/77 (37%), Gaps = 3/77 (3%)

Query: 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETM 78
           H P+L EK +      P  V +D   GAG  S      G NV A D    A     +  
Sbjct: 13 KHRPIL-EKALGYFPNLPL-VAIDCGCGAGNESAYLLSKGFNVHAFDISIDAQKVCTDRF 70

Query: 79 RDYKEQFSLFQATFSQL 95
          +D   +F  +  +F   
Sbjct: 71 KD-DSKFIFYHESFEDF 86


>gi|167772608|ref|ZP_02444661.1| hypothetical protein ANACOL_03987 [Anaerotruncus colihominis DSM
           17241]
 gi|167665086|gb|EDS09216.1| hypothetical protein ANACOL_03987 [Anaerotruncus colihominis DSM
           17241]
          Length = 190

 Score = 41.3 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 32/86 (37%), Gaps = 7/86 (8%)

Query: 34  PAPGKVILDATFGAGGYSRSFC----KMGSNVIALDRDPFAVSCGQETM--RDYKEQFSL 87
             PG   +DAT G  G+  +F         +V+A D    AV    E +  R +      
Sbjct: 20  VKPGDFCIDATAGR-GHDTAFLCSLVGGSGHVLAFDIQQEAVDSTTELLHTRGFAGIGRA 78

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGV 113
              + + +  Y   + V  + F+ G 
Sbjct: 79  VLDSHANMAAYAAPESVSCITFNFGW 104


>gi|228477135|ref|ZP_04061773.1| SAM-dependent methyltransferase [Streptococcus salivarius SK126]
 gi|228251154|gb|EEK10325.1| SAM-dependent methyltransferase [Streptococcus salivarius SK126]
          Length = 182

 Score = 41.3 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 12/92 (13%)

Query: 23  VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82
           VL ++ +A          +DAT G G  +     +   V A D    A+   ++ + D +
Sbjct: 16  VLDDESVA----------VDATMGNGNDTAFLAGLAKKVYAFDVQEQALEKTRQRLSDLE 65

Query: 83  -EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
            E   L       L  YV +  +   +F+LG 
Sbjct: 66  IENAELILDGHENLDHYVTEP-IRAAIFNLGY 96


>gi|188535245|ref|YP_001909042.1| 16S rRNA methyltransferase B [Erwinia tasmaniensis Et1/99]
 gi|224493254|sp|B2VK95|RSMB_ERWT9 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|188030287|emb|CAO98176.1| rRNA methylase Sun [Erwinia tasmaniensis Et1/99]
          Length = 429

 Score = 41.3 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85
            +ALL P  G+ ILD     GG +    +      V+A+D D   ++   E ++    Q 
Sbjct: 238 CVALLAPRDGEQILDLCAAPGGKTTHILEAAPQAKVMAVDVDAQRLARVSENLQRLTMQA 297

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            + Q        +  D   D ++ D   S
Sbjct: 298 EVKQGDGRTPAAWCGDTQFDRILLDAPCS 326


>gi|15895826|ref|NP_349175.1| rRNA methylase [Clostridium acetobutylicum ATCC 824]
 gi|15025588|gb|AAK80515.1|AE007754_13 Possible rRNA methylase (SAM-dependent methyltransferase
           superfamily), YTQB B.subtilis [Clostridium
           acetobutylicum ATCC 824]
 gi|325509978|gb|ADZ21614.1| putative rRNA methylase (SAM-dependent methyltransferase
           superfamily) [Clostridium acetobutylicum EA 2018]
          Length = 188

 Score = 41.3 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 28/84 (33%), Gaps = 6/84 (7%)

Query: 35  APGKVILDATFGAGGYS---RSFCKMGSNVIALDRDPFAVSCGQETMRDYKE--QFSLFQ 89
            PG   +D T G G  +       K    V A D    A+   +  +          L +
Sbjct: 20  KPGDTAVDCTAGNGNDTDFLCEIVKDKGRVYAFDIQEKALLSTKRKLEASGNIKIVKLIK 79

Query: 90  ATFSQLQDYVPDKGVDGVVFDLGV 113
                L  Y+ +  +   VF+LG 
Sbjct: 80  DGHENLDKYIRE-NIKAAVFNLGY 102


>gi|238797213|ref|ZP_04640714.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
           mollaretii ATCC 43969]
 gi|238718850|gb|EEQ10665.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
           mollaretii ATCC 43969]
          Length = 431

 Score = 41.3 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85
            + LL+P  G+ ILD     GG +    +     +V+A+D D   +   +E ++  K   
Sbjct: 238 CVDLLDPHNGEQILDLCAAPGGKTTHILEAAPKAHVLAVDIDEQRLDRVKENLQRLKLHA 297

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            +        +D+  D+  D ++ D   S
Sbjct: 298 VVRVGDGRTPEDWCGDQQFDRILLDAPCS 326


>gi|225850076|ref|YP_002730310.1| dimethyladenosine transferase [Persephonella marina EX-H1]
 gi|254807878|sp|C0QUE5|RSMA_PERMH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
          AltName: Full=16S rRNA
          (adenine(1518)-N(6)/adenine(1519)-N(6))-
          dimethyltransferase; AltName: Full=16S rRNA
          dimethyladenosine transferase; AltName: Full=16S rRNA
          dimethylase; AltName: Full=S-adenosylmethionine-6-N',
          N'-adenosyl(rRNA) dimethyltransferase
 gi|225645312|gb|ACO03498.1| dimethyladenosine transferase [Persephonella marina EX-H1]
          Length = 265

 Score = 41.3 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 11/70 (15%), Positives = 26/70 (37%), Gaps = 2/70 (2%)

Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYKEQFS 86
          ++  L+      +++   G G  +    +     V  ++ D       +E  +D+K  F 
Sbjct: 24 IVECLDIKEDDTVVEIGVGTGQLTEEILRRNPKIVYGIEIDKTVYPIIEERFKDFK-NFV 82

Query: 87 LFQATFSQLQ 96
          L +  F  + 
Sbjct: 83 LIKEDFFDVD 92


>gi|220910008|ref|YP_002485319.1| type 11 methyltransferase [Cyanothece sp. PCC 7425]
 gi|219866619|gb|ACL46958.1| Methyltransferase type 11 [Cyanothece sp. PCC 7425]
          Length = 254

 Score = 41.3 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 4/50 (8%)

Query: 29 IALLNPAPGKVILDATFGAG-GY-SRSFCKMGSNVIALDRDPFAVSCGQE 76
          + LL+P  G+ ILD   G G G+ +      G++V+ +D DP  ++  Q+
Sbjct: 26 LQLLDPQSGEDILD--LGCGTGHLTAKIASSGASVLGIDADPAMIAAAQQ 73


>gi|165936548|ref|ZP_02225116.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|166213307|ref|ZP_02239342.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|167399475|ref|ZP_02304999.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167419402|ref|ZP_02311155.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167425618|ref|ZP_02317371.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|270488262|ref|ZP_06205336.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
           KIM D27]
 gi|294502314|ref|YP_003566376.1| hypothetical protein YPZ3_0204 [Yersinia pestis Z176003]
 gi|165915664|gb|EDR34273.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|166205605|gb|EDR50085.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|166963396|gb|EDR59417.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167051979|gb|EDR63387.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167055308|gb|EDR65102.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|262360394|gb|ACY57115.1| hypothetical protein YPD4_0206 [Yersinia pestis D106004]
 gi|262364344|gb|ACY60901.1| hypothetical protein YPD8_0211 [Yersinia pestis D182038]
 gi|270336766|gb|EFA47543.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
           KIM D27]
 gi|294352773|gb|ADE63114.1| hypothetical protein YPZ3_0204 [Yersinia pestis Z176003]
          Length = 431

 Score = 41.3 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85
            + LL+P  G+ ILD     GG +    +     +V+A+D D   +S  +E ++  + Q 
Sbjct: 240 CVDLLDPQNGEQILDLCAAPGGKTTHILEAAPKAHVLAVDIDEQRLSRVKENLQRLQLQA 299

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            +          +  D+  D ++ D   S
Sbjct: 300 VVRVGDGRAPDTWCGDQQFDRILLDAPCS 328


>gi|162420599|ref|YP_001605204.1| 16S rRNA methyltransferase B [Yersinia pestis Angola]
 gi|162353414|gb|ABX87362.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
           Angola]
          Length = 435

 Score = 41.3 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85
            + LL+P  G+ ILD     GG +    +     +V+A+D D   +S  +E ++  + Q 
Sbjct: 244 CVDLLDPQNGEQILDLCAAPGGKTTHILEAAPKAHVLAVDIDEQRLSRVKENLQRLQLQA 303

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            +          +  D+  D ++ D   S
Sbjct: 304 VVRVGDGRAPDTWCGDQQFDRILLDAPCS 332


>gi|145633872|ref|ZP_01789593.1| methionyl-tRNA formyltransferase [Haemophilus influenzae 3655]
 gi|144985244|gb|EDJ92087.1| methionyl-tRNA formyltransferase [Haemophilus influenzae 3655]
          Length = 265

 Score = 41.3 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 2/82 (2%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88
           LL P   + ILDA    GG +    ++    NVIALD +   +   +E +    +Q  + 
Sbjct: 67  LLEPKNEEWILDACAAPGGKTTHILELAPQANVIALDVESHRLKRVEENLERLNQQAIVV 126

Query: 89  QATFSQLQDYVPDKGVDGVVFD 110
               SQ  +++ + G   V FD
Sbjct: 127 CGDASQPDEWLAEIGKSAVKFD 148


>gi|224493303|sp|A9R925|RSMB_YERPG RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
          Length = 429

 Score = 41.3 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85
            + LL+P  G+ ILD     GG +    +     +V+A+D D   +S  +E ++  + Q 
Sbjct: 238 CVDLLDPQNGEQILDLCAAPGGKTTHILEAAPKAHVLAVDIDEQRLSRVKENLQRLQLQA 297

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            +          +  D+  D ++ D   S
Sbjct: 298 VVRVGDGRAPDTWCGDQQFDRILLDAPCS 326


>gi|45434953|gb|AAS60514.1| tRNA and rRNA cytosine-C5-methylases [Yersinia pestis biovar
           Microtus str. 91001]
          Length = 435

 Score = 41.3 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85
            + LL+P  G+ ILD     GG +    +     +V+A+D D   +S  +E ++  + Q 
Sbjct: 244 CVDLLDPQNGEQILDLCAAPGGKTTHILEAAPKAHVLAVDIDEQRLSRVKENLQRLQLQA 303

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            +          +  D+  D ++ D   S
Sbjct: 304 VVRVGDGRAPDTWCGDQQFDRILLDAPCS 332


>gi|254369699|ref|ZP_04985709.1| 23S rRNA (Uracil-5-)-methyltransferase [Francisella tularensis
           subsp. holarctica FSC022]
 gi|157122658|gb|EDO66787.1| 23S rRNA (Uracil-5-)-methyltransferase [Francisella tularensis
           subsp. holarctica FSC022]
          Length = 449

 Score = 41.3 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 56/162 (34%), Gaps = 24/162 (14%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83
           ++++ I LL+ +    I+D   G G ++    +    VI ++ +P  V   +ET  +   
Sbjct: 289 MIKRAIELLDISENDSIIDLFCGLGNFTLPISQHAKTVIGVEGEPTMVKRAKETADN--N 346

Query: 84  QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGIS 143
             +      + L +                 S +       F + K     M +      
Sbjct: 347 NITNVNFYAANLFE-----------------SFEDKEWFNNFEYNK-----MLLDPPRAG 384

Query: 144 ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           A +V N     ++ RI+ +  +    +R A  +V  +     
Sbjct: 385 AQEVCNNIEKFNVKRIVYVSCDTAALARDAGILVNTKDYKLI 426


>gi|22127891|ref|NP_671314.1| 16S rRNA methyltransferase B [Yersinia pestis KIM 10]
 gi|51597957|ref|YP_072148.1| 16S rRNA methyltransferase B [Yersinia pseudotuberculosis IP 32953]
 gi|108809224|ref|YP_653140.1| 16S rRNA methyltransferase B [Yersinia pestis Antiqua]
 gi|108813989|ref|YP_649756.1| 16S rRNA methyltransferase B [Yersinia pestis Nepal516]
 gi|145597481|ref|YP_001161556.1| 16S rRNA methyltransferase B [Yersinia pestis Pestoides F]
 gi|150260712|ref|ZP_01917440.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis CA88-4125]
 gi|153947745|ref|YP_001402832.1| 16S rRNA methyltransferase B [Yersinia pseudotuberculosis IP 31758]
 gi|161511468|ref|NP_991637.2| 16S rRNA methyltransferase B [Yersinia pestis biovar Microtus str.
           91001]
 gi|165927896|ref|ZP_02223728.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|166010534|ref|ZP_02231432.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|167468244|ref|ZP_02332948.1| 16S rRNA methyltransferase B [Yersinia pestis FV-1]
 gi|170022575|ref|YP_001719080.1| 16S rRNA methyltransferase B [Yersinia pseudotuberculosis YPIII]
 gi|186897153|ref|YP_001874265.1| 16S rRNA methyltransferase B [Yersinia pseudotuberculosis PB1/+]
 gi|218927446|ref|YP_002345321.1| 16S rRNA methyltransferase B [Yersinia pestis CO92]
 gi|229836278|ref|ZP_04456445.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis Pestoides A]
 gi|229840098|ref|ZP_04460257.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229842180|ref|ZP_04462335.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229904520|ref|ZP_04519631.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis Nepal516]
 gi|46396984|sp|Q8ZJ81|RSMB_YERPE RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|81638254|sp|Q664V2|RSMB_YERPS RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|122979388|sp|Q1C2X7|RSMB_YERPA RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|122979880|sp|Q1CCX4|RSMB_YERPN RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|224493292|sp|A7FNK4|RSMB_YERP3 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|224493293|sp|B2K506|RSMB_YERPB RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|224493294|sp|A4TH21|RSMB_YERPP RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|224493295|sp|B1JJH6|RSMB_YERPY RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|21961028|gb|AAM87565.1|AE014004_3 hypothetical protein y4021 [Yersinia pestis KIM 10]
 gi|51591239|emb|CAH22905.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP
           32953]
 gi|108777637|gb|ABG20156.1| hypothetical protein YPN_3829 [Yersinia pestis Nepal516]
 gi|108781137|gb|ABG15195.1| hypothetical protein YPA_3233 [Yersinia pestis Antiqua]
 gi|115346057|emb|CAL18923.1| conserved hypothetical protein [Yersinia pestis CO92]
 gi|145209177|gb|ABP38584.1| hypothetical protein YPDSF_0162 [Yersinia pestis Pestoides F]
 gi|149290120|gb|EDM40197.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis CA88-4125]
 gi|152959240|gb|ABS46701.1| ribosomal RNA small subunit methyltransferase B [Yersinia
           pseudotuberculosis IP 31758]
 gi|165920172|gb|EDR37473.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165990624|gb|EDR42925.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|169749109|gb|ACA66627.1| sun protein [Yersinia pseudotuberculosis YPIII]
 gi|186700179|gb|ACC90808.1| sun protein [Yersinia pseudotuberculosis PB1/+]
 gi|229678638|gb|EEO74743.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis Nepal516]
 gi|229690490|gb|EEO82544.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229696464|gb|EEO86511.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229706346|gb|EEO92353.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis Pestoides A]
 gi|320013373|gb|ADV96944.1| 16S rRNA methyltransferase B [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 429

 Score = 41.3 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85
            + LL+P  G+ ILD     GG +    +     +V+A+D D   +S  +E ++  + Q 
Sbjct: 238 CVDLLDPQNGEQILDLCAAPGGKTTHILEAAPKAHVLAVDIDEQRLSRVKENLQRLQLQA 297

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            +          +  D+  D ++ D   S
Sbjct: 298 VVRVGDGRAPDTWCGDQQFDRILLDAPCS 326


>gi|299744837|ref|XP_002910844.1| R,R-butanediol dehydrogenase [Coprinopsis cinerea okayama7#130]
 gi|298406311|gb|EFI27350.1| R,R-butanediol dehydrogenase [Coprinopsis cinerea okayama7#130]
          Length = 452

 Score = 41.3 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 53  SFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLG 112
           +  K  S VI +D+ P  +   ++++      F   +   +++++ + +KGVD V  D G
Sbjct: 235 ALLKGASKVIGIDQVPERLEFAEQSLGIETINFKEHKDVPARIREIIGEKGVD-VCIDAG 293


>gi|187735461|ref|YP_001877573.1| rRNA methylase [Akkermansia muciniphila ATCC BAA-835]
 gi|187425513|gb|ACD04792.1| putative rRNA methylase [Akkermansia muciniphila ATCC BAA-835]
          Length = 235

 Score = 41.3 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 9/87 (10%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK---EQFS 86
            +PG  ++DAT G  G+   F          V A D    A+   +E +           
Sbjct: 65  VSPGDAVVDATAGN-GHDTVFLARLVGTSGQVHAFDVQEEAIRATRERLEKEGLLTPSVQ 123

Query: 87  LFQATFSQLQDYVPDKGVDGVVFDLGV 113
           L  A+  +L + V    V  +VF+LG 
Sbjct: 124 LHLASHDRLAELVGGP-VKAIVFNLGY 149


>gi|160873155|ref|YP_001552471.1| sun protein [Shewanella baltica OS195]
 gi|160858677|gb|ABX47211.1| sun protein [Shewanella baltica OS195]
 gi|315265380|gb|ADT92233.1| sun protein [Shewanella baltica OS678]
          Length = 428

 Score = 41.3 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 2/86 (2%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88
           LL P   ++ILDA    GG S    ++     ++A+D D   +   Q+ +     +  L 
Sbjct: 235 LLTPQANELILDACAAPGGKSCHLLELEPSIKLVAVDFDAKRLERVQQNLDRLSLKAELI 294

Query: 89  QATFSQLQDYVPDKGVDGVVFDLGVS 114
               + +  +      D ++ D   S
Sbjct: 295 HGDAANIDSWWQGGQFDRILLDAPCS 320


>gi|332213797|ref|XP_003256017.1| PREDICTED: trimethylguanosine synthase [Nomascus leucogenys]
          Length = 855

 Score = 41.3 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 2/68 (2%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96
           V++DA  G GG +  F   G  VIA+D DP  ++  +     Y   ++       F  L 
Sbjct: 695 VVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA 754

Query: 97  DYVPDKGV 104
             +    V
Sbjct: 755 SCLKADVV 762


>gi|297682885|ref|XP_002819134.1| PREDICTED: trimethylguanosine synthase-like [Pongo abelii]
          Length = 853

 Score = 41.3 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 2/68 (2%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96
           V++DA  G GG +  F   G  VIA+D DP  ++  +     Y   ++       F  L 
Sbjct: 693 VVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA 752

Query: 97  DYVPDKGV 104
             +    V
Sbjct: 753 SCLKADVV 760


>gi|114620166|ref|XP_001153796.1| PREDICTED: trimethylguanosine synthase isoform 1 [Pan troglodytes]
          Length = 855

 Score = 41.3 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 2/68 (2%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96
           V++DA  G GG +  F   G  VIA+D DP  ++  +     Y   ++       F  L 
Sbjct: 695 VVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA 754

Query: 97  DYVPDKGV 104
             +    V
Sbjct: 755 SCLKADVV 762


>gi|241236668|ref|XP_002400913.1| 26S protease regulatory subunit 6A, putative [Ixodes scapularis]
 gi|215496094|gb|EEC05735.1| 26S protease regulatory subunit 6A, putative [Ixodes scapularis]
          Length = 1014

 Score = 41.3 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 14/100 (14%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96
           +++DA  GAGG +  F  +   VIA+D DP  +   ++    Y   ++       F +L 
Sbjct: 858 IVIDAFCGAGGNTIQFALVSRLVIAVDIDPKKIELARKNAAVYGVLDKIQFVLGDFLELA 917

Query: 97  DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
             +          D+   SM     +    + +S   D+R
Sbjct: 918 PRLR--------GDVVFLSMPWGGPE----YLQSDSFDLR 945


>gi|227354905|ref|ZP_03839319.1| ribosomal RNA small subunit methyltransferase B [Proteus mirabilis
           ATCC 29906]
 gi|227164987|gb|EEI49826.1| ribosomal RNA small subunit methyltransferase B [Proteus mirabilis
           ATCC 29906]
          Length = 422

 Score = 41.3 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 37/91 (40%), Gaps = 2/91 (2%)

Query: 26  EKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKE 83
           ++   LL P   + ILD     GG +    ++    +V+A+D D   ++  +E +   K 
Sbjct: 236 QRCAELLAPQNNEQILDLCAAPGGKTTHILEIAPKAHVLAIDIDEQRLARVKENLNRLKL 295

Query: 84  QFSLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
             ++        + +  +   D ++ D   S
Sbjct: 296 HATVKSGDGRYPEQWCANMQFDRILLDAPCS 326


>gi|197287099|ref|YP_002152971.1| 16S rRNA methyltransferase B [Proteus mirabilis HI4320]
 gi|224493257|sp|B4F1L5|RSMB_PROMH RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|194684586|emb|CAR46442.1| ribosomal RNA small subunit methyltransferase B [Proteus mirabilis
           HI4320]
          Length = 422

 Score = 41.3 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 37/91 (40%), Gaps = 2/91 (2%)

Query: 26  EKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKE 83
           ++   LL P   + ILD     GG +    ++    +V+A+D D   ++  +E +   K 
Sbjct: 236 QRCAELLAPQNNEQILDLCAAPGGKTTHILEIAPKAHVLAIDIDEQRLARVKENLNRLKL 295

Query: 84  QFSLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
             ++        + +  +   D ++ D   S
Sbjct: 296 HATVKSGDGRYPEQWCANMQFDRILLDAPCS 326


>gi|198435713|ref|XP_002131256.1| PREDICTED: similar to hepatocellular carcinoma-associated antigen
           137 [Ciona intestinalis]
          Length = 787

 Score = 41.3 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 2/68 (2%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96
           VI+DA  G+GG +  F      V+A+D DP  +   +     Y   ++      +F  + 
Sbjct: 588 VIVDAFCGSGGNAIQFAFTCEKVLAIDIDPVKLENAKHNAAIYGVEDRIDFICGSFFDIA 647

Query: 97  DYVPDKGV 104
             +    V
Sbjct: 648 PTLKADIV 655


>gi|262041526|ref|ZP_06014723.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|259041087|gb|EEW42161.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
          Length = 434

 Score = 41.3 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 33/90 (36%), Gaps = 3/90 (3%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82
           ++   +  L+  P   +LD   G G ++       ++V+ ++  P  V  G+E       
Sbjct: 274 MVRTALEWLDLRPEDRVLDLFCGMGNFTLPLATRAAHVVGVEGVPALVEKGRENSARNGL 333

Query: 83  EQFSLFQATFSQ--LQDYVPDKGVDGVVFD 110
              + F     +   +      G D V+ D
Sbjct: 334 SNVTFFHENLEEDVTRQAWAKHGFDKVLLD 363


>gi|220929163|ref|YP_002506072.1| rRNA methylase [Clostridium cellulolyticum H10]
 gi|219999491|gb|ACL76092.1| putative rRNA methylase [Clostridium cellulolyticum H10]
          Length = 188

 Score = 41.3 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 38/94 (40%), Gaps = 9/94 (9%)

Query: 26  EKVIALLNPAPGKVILDATFGAGGYSRSFCK----MGSNVIALDRDPFAVSCGQETMRDY 81
            ++++ +    G +++DAT G  G+  +F       G  V + D    A++  +  +   
Sbjct: 12  HEIVSRVVCN-GDIVVDATAGN-GHDTAFLAKLVGAGGLVYSFDIQESALNTTRNKLEAE 69

Query: 82  K--EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
               + +L       +  YV    +   +F+LG 
Sbjct: 70  NLLNRVNLIHDGHQNMMKYVNKP-IKAAMFNLGY 102


>gi|332159134|ref|YP_004424413.1| sun protein (fmu protein) [Pyrococcus sp. NA2]
 gi|331034597|gb|AEC52409.1| sun protein (fmu protein) [Pyrococcus sp. NA2]
          Length = 450

 Score = 41.3 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 15/96 (15%)

Query: 28  VIALLNPAPGKVILDA-------TFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRD 80
           V  +LNP PG+ +LD        TF    ++ +  +    ++A+D     +   +E M+ 
Sbjct: 253 VAHVLNPEPGERVLDLAAAPGSKTF----HAAALMENKGEIVAVDYSYDRLMKMKERMKI 308

Query: 81  YK-EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSS 115
              +   L     +  Q ++     D V+ D   SS
Sbjct: 309 LGVKNVKLVH---ADGQSFLDKDKFDKVILDAPCSS 341


>gi|270292446|ref|ZP_06198657.1| SAM-dependent methyltransferase, MraW methylase family
           [Streptococcus sp. M143]
 gi|270278425|gb|EFA24271.1| SAM-dependent methyltransferase, MraW methylase family
           [Streptococcus sp. M143]
          Length = 185

 Score = 41.3 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 10/91 (10%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82
           L +V+         +++DAT G  G+ +    K+   V A D    A+   QE +     
Sbjct: 12  LAEVV-----TQDDIVVDATMGN-GHDTLFLAKLAKQVYAFDIQEQALEKTQERLYQAGM 65

Query: 83  EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
               L       L  +V +    G+ F+LG 
Sbjct: 66  TNAQLILQGHETLDQFVTEAKA-GI-FNLGY 94


>gi|238752659|ref|ZP_04614130.1| Ribosomal RNA small subunit methyltransferase B [Yersinia rohdei
           ATCC 43380]
 gi|238709086|gb|EEQ01333.1| Ribosomal RNA small subunit methyltransferase B [Yersinia rohdei
           ATCC 43380]
          Length = 429

 Score = 41.3 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 38/89 (42%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85
            + LL+P  G+ ILD     GG +    +     +V+A+D D   +S  +E ++  K   
Sbjct: 238 CVDLLSPQNGEQILDLCAAPGGKTTHILEAAPKAHVLAVDIDEQRLSRVKENLQRLKLHA 297

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            +         ++  ++  D ++ D   S
Sbjct: 298 DVRVGDGRTPDEWCGNQQFDRILLDAPCS 326


>gi|208779007|ref|ZP_03246353.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Francisella novicida
           FTG]
 gi|208744807|gb|EDZ91105.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Francisella novicida
           FTG]
          Length = 449

 Score = 41.3 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 56/162 (34%), Gaps = 24/162 (14%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83
           ++++ I LL+ +    I+D   G G ++    +    VI ++ +P  V   +ET  +   
Sbjct: 289 MIQRAIELLDISENDSIIDLFCGLGNFTLPISQHAKTVIGVEGEPTMVKRAKETADN--N 346

Query: 84  QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGIS 143
             +      + L +                 S +       F + K     M +      
Sbjct: 347 NITNVNFYAANLFE-----------------SFEDKEWFNNFEYNK-----MLLDPPRAG 384

Query: 144 ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           A +V N     ++ RI+ +  +    +R A  +V  +     
Sbjct: 385 AQEVCNNIEKFNVKRIVYVSCDTATLARDAGILVNTKGYKLI 426


>gi|205374580|ref|ZP_03227375.1| putative rRNA methylase [Bacillus coahuilensis m4-4]
          Length = 190

 Score = 41.3 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 39/99 (39%), Gaps = 15/99 (15%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMR 79
           LL+  +       G +++DAT G  G+   +         +V A D    A+   +  ++
Sbjct: 13  LLQSAVD-----KGDIVIDATMGN-GHDTLYLAQLVGEEGHVFAFDIQNEAIDSTRMQLK 66

Query: 80  DYK--EQFSLFQATFSQLQDYVPDK---GVDGVVFDLGV 113
                E  +L       ++D VP      V G +F+LG 
Sbjct: 67  KSGITEGVTLIHRGHEHVKDAVPADVHGNVKGAIFNLGY 105


>gi|309751781|gb|ADO81765.1| 16S rRNA m5C967 methyltransferase [Haemophilus influenzae R2866]
          Length = 450

 Score = 41.3 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 2/82 (2%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88
           LL P   + ILDA    GG +    ++    NVIALD +   +   +E +    +Q  + 
Sbjct: 253 LLEPKNEEWILDACAAPGGKTTHILELAPQANVIALDVESHRLKRVEENLARLNQQAIVV 312

Query: 89  QATFSQLQDYVPDKGVDGVVFD 110
               S+  +++ + G   V FD
Sbjct: 313 CGDASKPDEWLAEIGKSAVKFD 334


>gi|153001658|ref|YP_001367339.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella baltica
           OS185]
 gi|226725387|sp|A6WR37|RUMA_SHEB8 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|151366276|gb|ABS09276.1| RNA methyltransferase, TrmA family [Shewanella baltica OS185]
          Length = 450

 Score = 41.3 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 2/89 (2%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82
           ++ + +  L PAP + ILD   G G +S    KMG++VI ++     V+  +   +    
Sbjct: 292 MVAQALDWLAPAPDERILDLFCGMGNFSLPLAKMGADVIGVEGVAEMVTQARVNAKANNL 351

Query: 83  EQFSLFQATFSQLQDYVPDKG-VDGVVFD 110
           ++ + +    S      P  G +D ++ D
Sbjct: 352 DKLTFYHGDLSADLSLEPWMGKIDKLLLD 380


>gi|161529283|ref|YP_001583109.1| RNA methylase [Nitrosopumilus maritimus SCM1]
 gi|160340584|gb|ABX13671.1| putative RNA methylase [Nitrosopumilus maritimus SCM1]
          Length = 315

 Score = 41.3 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 39/91 (42%), Gaps = 8/91 (8%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRD 80
           L   +I L+    G+ + D   G G    +  +    G + I LD D   V   ++ +++
Sbjct: 166 LTRAMINLVGLKKGETVCDPFCGTG---TTLLEAESMGIHGIGLDFDEKMVEITKKNLKE 222

Query: 81  YKEQFSLFQATFSQLQDYVPDKGVDGVVFDL 111
              +  +  + F ++++   +   DG+V D 
Sbjct: 223 NGYKSRVIHSDFQEIKNMADE--FDGIVTDF 251


>gi|315282619|ref|ZP_07870989.1| methylase protein [Listeria marthii FSL S4-120]
 gi|313613730|gb|EFR87504.1| methylase protein [Listeria marthii FSL S4-120]
          Length = 192

 Score = 41.3 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 8/86 (9%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK--EQFSL 87
              G  ++DAT G  G+             +V+  D    A+      + +     Q  L
Sbjct: 18  VRSGDYVVDATCGN-GHDTLLLAELVGVNGHVLGFDIQQLAIDATNTRLENAGASSQVEL 76

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGV 113
             A+ +++ +Y   K V   +F+LG 
Sbjct: 77  VCASHARIPEY-TSKPVRAAIFNLGY 101


>gi|288931958|ref|YP_003436018.1| RNA methylase, NOL1/NOP2/sun family [Ferroglobus placidus DSM
           10642]
 gi|288894206|gb|ADC65743.1| RNA methylase, NOL1/NOP2/sun family [Ferroglobus placidus DSM
           10642]
          Length = 446

 Score = 41.3 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 34/84 (40%), Gaps = 4/84 (4%)

Query: 31  LLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ-FS 86
           LL+P PG+V++D     GG   +     K    + A D D   +   +E +     +   
Sbjct: 249 LLDPKPGEVVVDLCAAPGGKTLHMAELMKNRGVIHAFDIDELRLKRMEELIERCGIRIVK 308

Query: 87  LFQATFSQLQDYVPDKGVDGVVFD 110
           +++    +    + +   D V+ D
Sbjct: 309 IYKKDARKATKILGESVADKVMLD 332


>gi|229845581|ref|ZP_04465708.1| sun protein [Haemophilus influenzae 6P18H1]
 gi|229811516|gb|EEP47218.1| sun protein [Haemophilus influenzae 6P18H1]
          Length = 450

 Score = 41.3 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 2/82 (2%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88
           LL P   + ILDA    GG +    ++    NVIALD +   +   +E +    +Q  + 
Sbjct: 253 LLEPKNEEWILDACAAPGGKTTHILELAPQANVIALDVESHRLKRVEENLERLNQQAIVV 312

Query: 89  QATFSQLQDYVPDKGVDGVVFD 110
               SQ  +++ + G   V FD
Sbjct: 313 CGDASQPDEWLAEIGKSAVKFD 334


>gi|145635940|ref|ZP_01791626.1| methionyl-tRNA formyltransferase [Haemophilus influenzae PittAA]
 gi|145266799|gb|EDK06817.1| methionyl-tRNA formyltransferase [Haemophilus influenzae PittAA]
          Length = 451

 Score = 41.3 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 2/82 (2%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88
           LL P   + ILDA    GG +    ++    NVIALD +   +   +E +    +Q  + 
Sbjct: 253 LLEPKNEEWILDACAAPGGKTTHILELAPQANVIALDVESHRLKRVEENLERLNQQAIVV 312

Query: 89  QATFSQLQDYVPDKGVDGVVFD 110
               SQ  +++ + G   V FD
Sbjct: 313 CGDASQPDEWLAEIGKSAVKFD 334


>gi|323693236|ref|ZP_08107454.1| SAM independent family methyltransferase [Clostridium symbiosum
           WAL-14673]
 gi|323502719|gb|EGB18563.1| SAM independent family methyltransferase [Clostridium symbiosum
           WAL-14673]
          Length = 240

 Score = 41.3 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 1/99 (1%)

Query: 3   SKSCKTMSSAIHHTIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV 61
            K+ +   +A+     + H  V+  KV  LL+P P   ILD   G G YS    + G+++
Sbjct: 17  EKNAQFWDNAMGDKSNEFHREVVRPKVTELLSPNPADYILDIACGNGNYSSYLAQRGASI 76

Query: 62  IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP 100
           +A D     +   +     Y +Q     A  +  +  + 
Sbjct: 77  VAFDYSKKMIELAKRRQSQYAKQIEFCVADATNRESILE 115


>gi|290474987|ref|YP_003467871.1| putative methyltransferase [Xenorhabdus bovienii SS-2004]
 gi|289174304|emb|CBJ81096.1| putative methyltransferase [Xenorhabdus bovienii SS-2004]
          Length = 271

 Score = 41.3 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 27/69 (39%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSL 87
           VI L     G+ ++D   G G +S +  + G NVI +D +   +S  +     +      
Sbjct: 55  VINLCGLKSGQYLIDCPCGYGRHSVALREKGINVIGIDVNDEHLSIARRHAEVHNSDVIF 114

Query: 88  FQATFSQLQ 96
            +      +
Sbjct: 115 RKDDMRTFK 123


>gi|240947872|ref|ZP_04752312.1| ribosomal RNA small subunit methyltransferase B [Actinobacillus
           minor NM305]
 gi|240297834|gb|EER48270.1| ribosomal RNA small subunit methyltransferase B [Actinobacillus
           minor NM305]
          Length = 444

 Score = 41.3 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 3/88 (3%)

Query: 30  ALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSL 87
            LL+   G++ILDA    GG +    +      VIALD +   ++  +E +    ++ ++
Sbjct: 248 ELLDAQNGELILDACAAPGGKTTHILEKAPQAKVIALDIEEARLARVKENLARLNQRATV 307

Query: 88  FQATFSQLQDYVPD-KGVDGVVFDLGVS 114
                SQ + ++ +    D ++ D   S
Sbjct: 308 ICGDASQPEQWLDNGVMFDRILLDAPCS 335


>gi|167757784|ref|ZP_02429911.1| hypothetical protein CLOSCI_00115 [Clostridium scindens ATCC 35704]
 gi|167769822|ref|ZP_02441875.1| hypothetical protein ANACOL_01156 [Anaerotruncus colihominis DSM
           17241]
 gi|317500622|ref|ZP_07958841.1| SAM independent family methyltransferase [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|323487600|ref|ZP_08092890.1| SAM independent family methyltransferase [Clostridium symbiosum
           WAL-14163]
 gi|167664666|gb|EDS08796.1| hypothetical protein CLOSCI_00115 [Clostridium scindens ATCC 35704]
 gi|167668183|gb|EDS12313.1| hypothetical protein ANACOL_01156 [Anaerotruncus colihominis DSM
           17241]
 gi|316897940|gb|EFV19992.1| SAM independent family methyltransferase [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|323399099|gb|EGA91507.1| SAM independent family methyltransferase [Clostridium symbiosum
           WAL-14163]
          Length = 255

 Score = 41.3 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 1/99 (1%)

Query: 3   SKSCKTMSSAIHHTIGD-HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNV 61
            K+ +   +A+     + H  V+  KV  LL+P P   ILD   G G YS    + G+++
Sbjct: 32  EKNAQFWDNAMGDKSNEFHREVVRPKVTELLSPNPADYILDIACGNGNYSSYLAQRGASI 91

Query: 62  IALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP 100
           +A D     +   +     Y +Q     A  +  +  + 
Sbjct: 92  VAFDYSKKMIELAKRRQSQYAKQIEFCVADATNRESILE 130


>gi|16803702|ref|NP_465187.1| hypothetical protein lmo1662 [Listeria monocytogenes EGD-e]
 gi|224503672|ref|ZP_03671979.1| hypothetical protein LmonFR_14400 [Listeria monocytogenes FSL
           R2-561]
 gi|16411098|emb|CAC99740.1| lmo1662 [Listeria monocytogenes EGD-e]
          Length = 191

 Score = 41.3 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 8/86 (9%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK--EQFSL 87
              G  ++DAT G  G+             +V+  D    A+      + +     Q  L
Sbjct: 18  VRSGDYVVDATCGN-GHDTLLLAELVGINGHVLGFDIQQLAIDATNTRLENAGVSSQVEL 76

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGV 113
             A+ +++ +Y   K V   +F+LG 
Sbjct: 77  VCASHARIPEY-TSKPVRAAIFNLGY 101


>gi|83310707|ref|YP_420971.1| SAM-dependent methyltransferase [Magnetospirillum magneticum
          AMB-1]
 gi|82945548|dbj|BAE50412.1| SAM-dependent methyltransferase [Magnetospirillum magneticum
          AMB-1]
          Length = 177

 Score = 41.3 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 6/54 (11%)

Query: 30 ALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83
          A L P  G  +LD   G G ++R F   G NV ALDRD       Q  + +  E
Sbjct: 18 AALVP-EGGTVLDLACGGGRHARLFLDRGHNVTALDRD-----IAQARLAEGAE 65


>gi|18977637|ref|NP_578994.1| nol1-nop2-sun family nucleolar protein II [Pyrococcus furiosus DSM
           3638]
 gi|18893359|gb|AAL81389.1| putative nucleolar protein II (nol1-nop2-sun family) [Pyrococcus
           furiosus DSM 3638]
          Length = 450

 Score = 41.3 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 40/95 (42%), Gaps = 13/95 (13%)

Query: 28  VIALLNPAPGKVILDA-------TFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRD 80
           V  +L+P PG+ +LD        TF    ++ +  +    ++A+D     +   +E M+ 
Sbjct: 253 VAHVLSPEPGERVLDLAAAPGSKTF----HAAALMENKGEIVAVDYSYERLVRMKERMKK 308

Query: 81  YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSS 115
                   +  ++  Q Y+  +  D ++ D   SS
Sbjct: 309 LG--VKNVKLVYADGQSYIDKEKFDKIILDAPCSS 341


>gi|325136027|gb|EGC58637.1| putative rRNA methylase [Neisseria meningitidis M0579]
          Length = 188

 Score = 41.3 bits (96), Expect = 0.24,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 7/83 (8%)

Query: 36  PGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQA 90
            G   LD T G  G+   F          V A D  P A+S  +  +++ + E   L   
Sbjct: 20  EGGNALDGTAGN-GHDTLFLAQTAGIRGKVWAFDIQPQALSRTRCRLKEARYENVQLILD 78

Query: 91  TFSQLQDYVPDKGVDGVVFDLGV 113
               L+ YV +  ++  +F+ G 
Sbjct: 79  GHENLKQYVSEP-LNAAIFNFGW 100


>gi|304387944|ref|ZP_07370117.1| rRNA methyltransferase [Neisseria meningitidis ATCC 13091]
 gi|304338041|gb|EFM04178.1| rRNA methyltransferase [Neisseria meningitidis ATCC 13091]
 gi|325131797|gb|EGC54497.1| putative rRNA methylase [Neisseria meningitidis M6190]
 gi|325133737|gb|EGC56393.1| putative rRNA methylase [Neisseria meningitidis M13399]
 gi|325137847|gb|EGC60422.1| putative rRNA methylase [Neisseria meningitidis ES14902]
 gi|325197969|gb|ADY93425.1| putative rRNA methylase [Neisseria meningitidis G2136]
          Length = 188

 Score = 41.3 bits (96), Expect = 0.24,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 7/83 (8%)

Query: 36  PGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQA 90
            G   LD T G  G+   F          V A D  P A+S  +  +++ + E   L   
Sbjct: 20  EGGNALDGTAGN-GHDTLFLAQTAGIRGKVWAFDIQPQALSRTRCRLKEARYENVQLILD 78

Query: 91  TFSQLQDYVPDKGVDGVVFDLGV 113
               L+ YV +  ++  +F+ G 
Sbjct: 79  GHENLKQYVSEP-LNAAIFNFGW 100


>gi|261392882|emb|CAX50463.1| putative rRNA methyltransferase [Neisseria meningitidis 8013]
          Length = 188

 Score = 41.3 bits (96), Expect = 0.24,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 7/83 (8%)

Query: 36  PGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQA 90
            G   LD T G  G+   F          V A D  P A+S  +  +++ + E   L   
Sbjct: 20  EGGNALDGTAGN-GHDTLFLAQTAGIRGKVWAFDIQPQALSRTRCRLKEARYENVQLILD 78

Query: 91  TFSQLQDYVPDKGVDGVVFDLGV 113
               L+ YV +  ++  +F+ G 
Sbjct: 79  GHENLKQYVSEP-LNAAIFNFGW 100


>gi|254674314|emb|CBA10098.1| conserved hypothetical protein [Neisseria meningitidis alpha275]
 gi|316983733|gb|EFV62714.1| rRNA methylase family protein [Neisseria meningitidis H44/76]
 gi|325200565|gb|ADY96020.1| putative rRNA methylase [Neisseria meningitidis H44/76]
          Length = 188

 Score = 41.3 bits (96), Expect = 0.24,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 7/83 (8%)

Query: 36  PGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQA 90
            G   LD T G  G+   F          V A D  P A+S  +  +++ + E   L   
Sbjct: 20  EGGNALDGTAGN-GHDTLFLAQTAGIRGKVWAFDIQPQALSRTRCRLKEARYENVQLILD 78

Query: 91  TFSQLQDYVPDKGVDGVVFDLGV 113
               L+ YV +  ++  +F+ G 
Sbjct: 79  GHENLKQYVSEP-LNAAIFNFGW 100


>gi|254669738|emb|CBA03926.1| conserved hypothetical protein [Neisseria meningitidis alpha153]
 gi|325144213|gb|EGC66520.1| putative rRNA methylase [Neisseria meningitidis M01-240013]
 gi|325206408|gb|ADZ01861.1| putative rRNA methylase [Neisseria meningitidis M04-240196]
          Length = 188

 Score = 41.3 bits (96), Expect = 0.24,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 7/83 (8%)

Query: 36  PGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQA 90
            G   LD T G  G+   F          V A D  P A+S  +  +++ + E   L   
Sbjct: 20  EGGNALDGTAGN-GHDTLFLAQTAGIRGKVWAFDIQPQALSRTRCRLKEARYENVQLILD 78

Query: 91  TFSQLQDYVPDKGVDGVVFDLGV 113
               L+ YV +  ++  +F+ G 
Sbjct: 79  GHENLKQYVSEP-LNAAIFNFGW 100


>gi|254804629|ref|YP_003082850.1| putative rRNA methylase [Neisseria meningitidis alpha14]
 gi|254668171|emb|CBA04853.1| putative rRNA methylase [Neisseria meningitidis alpha14]
 gi|325127866|gb|EGC50772.1| putative rRNA methylase [Neisseria meningitidis N1568]
          Length = 188

 Score = 41.3 bits (96), Expect = 0.24,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 7/83 (8%)

Query: 36  PGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQA 90
            G   LD T G  G+   F          V A D  P A+S  +  +++ + E   L   
Sbjct: 20  EGGNALDGTAGN-GHDTLFLAQTAGIRGKVWAFDIQPQALSRTRCRLKEARYENVQLILD 78

Query: 91  TFSQLQDYVPDKGVDGVVFDLGV 113
               L+ YV +  ++  +F+ G 
Sbjct: 79  GHENLKQYVSEP-LNAAIFNFGW 100


>gi|161869691|ref|YP_001598858.1| hypothetical protein NMCC_0711 [Neisseria meningitidis 053442]
 gi|161595244|gb|ABX72904.1| conserved hypothetical protein [Neisseria meningitidis 053442]
          Length = 188

 Score = 41.3 bits (96), Expect = 0.24,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 7/83 (8%)

Query: 36  PGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQA 90
            G   LD T G  G+   F          V A D  P A+S  +  +++ + E   L   
Sbjct: 20  EGGNALDGTAGN-GHDTLFLAQTAGIRGKVWAFDIQPQALSRTRCRLKEARYENVQLILD 78

Query: 91  TFSQLQDYVPDKGVDGVVFDLGV 113
               L+ YV +  ++  +F+ G 
Sbjct: 79  GHENLKQYVSEP-LNAAIFNFGW 100


>gi|188582359|ref|YP_001925804.1| Fmu (Sun) domain protein [Methylobacterium populi BJ001]
 gi|179345857|gb|ACB81269.1| Fmu (Sun) domain protein [Methylobacterium populi BJ001]
          Length = 367

 Score = 41.3 bits (96), Expect = 0.24,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 10/84 (11%)

Query: 35  APGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMRDYKEQFSLF--- 88
            PG+ I+D   G GG S +        + +IA D DP  ++   E +R    Q  +    
Sbjct: 166 RPGETIVDLCAGGGGKSLALAAITGNAARLIATDADPRRLAPIHERLRRSGAQVEVRTPR 225

Query: 89  --QATFSQLQDYVPDKGVDGVVFD 110
             +A    L D   D  VD V+ D
Sbjct: 226 TGKARSDVLADL--DGTVDRVLVD 247


>gi|261856665|ref|YP_003263948.1| sun protein [Halothiobacillus neapolitanus c2]
 gi|261837134|gb|ACX96901.1| sun protein [Halothiobacillus neapolitanus c2]
          Length = 437

 Score = 41.3 bits (96), Expect = 0.24,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85
           V+ LL+ APG+ +LDA    GG + +  +     NV A+D D   ++  QE +   +   
Sbjct: 237 VVDLLDLAPGQHVLDACSAPGGKTLAMLQHQPESNVTAVDIDTTRMARVQENLERGQVFA 296

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            L        QD+   +  D ++ D+  S
Sbjct: 297 RLIVGDAGAPQDWWDGQPFDRILADVPCS 325


>gi|120552984|ref|YP_957335.1| sun protein [Marinobacter aquaeolei VT8]
 gi|120322833|gb|ABM17148.1| 16S rRNA m(5)C-967 methyltransferase [Marinobacter aquaeolei VT8]
          Length = 433

 Score = 41.3 bits (96), Expect = 0.24,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 3/90 (3%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQ 84
              LL+  PG+ +LDA    GG + +  +       V+A+D     +   QE +      
Sbjct: 235 CTTLLDLQPGQRVLDACAAPGGKTCAILEACGALDEVVAIDESAERLPRVQENLDRLDLH 294

Query: 85  FSLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            +L QA  + +  +      D ++ D+  S
Sbjct: 295 ATLTQADAADIDSWWDGTPFDRILLDVPCS 324


>gi|47097507|ref|ZP_00235048.1| conserved hypothetical protein [Listeria monocytogenes str. 1/2a
           F6854]
 gi|254829466|ref|ZP_05234153.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
 gi|254898171|ref|ZP_05258095.1| methylase protein [Listeria monocytogenes J0161]
 gi|254912336|ref|ZP_05262348.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|254936663|ref|ZP_05268360.1| conserved hypothetical protein [Listeria monocytogenes F6900]
 gi|47014122|gb|EAL05114.1| conserved hypothetical protein [Listeria monocytogenes str. 1/2a
           F6854]
 gi|258601881|gb|EEW15206.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
 gi|258609259|gb|EEW21867.1| conserved hypothetical protein [Listeria monocytogenes F6900]
 gi|293590317|gb|EFF98651.1| conserved hypothetical protein [Listeria monocytogenes J2818]
          Length = 191

 Score = 41.3 bits (96), Expect = 0.24,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 8/86 (9%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK--EQFSL 87
             PG  ++DAT G  G+             +V+  D    AV   +  + +     Q  L
Sbjct: 18  VRPGDYVIDATCGN-GHDTLLLAELVGINGHVLGFDIQQVAVDATKARLENAGVSSQVEL 76

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGV 113
             A+ +++  Y   + V   +F+LG 
Sbjct: 77  VCASHARIPAY-TSRPVRAAIFNLGY 101


>gi|187932009|ref|YP_001891994.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis
           subsp. mediasiatica FSC147]
 gi|187712918|gb|ACD31215.1| RNA methyltransferase, trmA family [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 449

 Score = 40.9 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 56/162 (34%), Gaps = 24/162 (14%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83
           ++++ I LL+ +    I+D   G G ++    +    VI ++ +P  V   +ET  +   
Sbjct: 289 MIKRAIELLDISENDSIIDLFCGLGNFTLPISQHAKTVIGVEGEPTMVKRAKETADN--N 346

Query: 84  QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGIS 143
             +      + L +                 S +       F + K     M +      
Sbjct: 347 NITNVNFYAANLFE-----------------SFEDKEWFNNFEYNK-----MLLDPPRAG 384

Query: 144 ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           A +V N     ++ RI+ +  +    +R A  +V  +     
Sbjct: 385 AQEVCNNIEKFNVKRIVYVSCDTAALARDAGILVNTKGYKLI 426


>gi|224456895|ref|ZP_03665368.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|254370321|ref|ZP_04986326.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254874638|ref|ZP_05247348.1| rumA, 23S rRNA (uracil-5-)-methyltransferase [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|151568564|gb|EDN34218.1| hypothetical protein FTBG_00076 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840637|gb|EET19073.1| rumA, 23S rRNA (uracil-5-)-methyltransferase [Francisella
           tularensis subsp. tularensis MA00-2987]
          Length = 449

 Score = 40.9 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 56/162 (34%), Gaps = 24/162 (14%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83
           ++++ I LL+ +    I+D   G G ++    +    VI ++ +P  V   +ET  +   
Sbjct: 289 MIKRAIELLDISENDSIIDLFCGLGNFTLPISQHAKTVIGVEGEPTMVKRAKETADN--N 346

Query: 84  QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGIS 143
             +      + L +                 S +       F + K     M +      
Sbjct: 347 NITNVNFYAANLFE-----------------SFEDKEWFNNFEYNK-----MLLDPPRAG 384

Query: 144 ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           A +V N     ++ RI+ +  +    +R A  +V  +     
Sbjct: 385 AQEVCNNIEKFNVKRIVYVSCDTAALARDAGILVNTKGYKLI 426


>gi|54112953|gb|AAV29110.1| NT02FT0992 [synthetic construct]
          Length = 449

 Score = 40.9 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 56/162 (34%), Gaps = 24/162 (14%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83
           ++++ I LL+ +    I+D   G G ++    +    VI ++ +P  V   +ET  +   
Sbjct: 289 MIKRAIELLDISENDSIIDLFCGLGNFTLPISQHAKTVIGVEGEPTMVKRAKETADN--N 346

Query: 84  QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGIS 143
             +      + L +                 S +       F + K     M +      
Sbjct: 347 NITNVNFYAANLFE-----------------SFEDKEWFNNFEYNK-----MLLDPPRAG 384

Query: 144 ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           A +V N     ++ RI+ +  +    +R A  +V  +     
Sbjct: 385 AQEVCNNIEKFNVKRIVYVSCDTAALARDAGILVNTKGYKLI 426


>gi|89256815|ref|YP_514177.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis
           subsp. holarctica LVS]
 gi|115315201|ref|YP_763924.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis
           subsp. holarctica OSU18]
 gi|156502981|ref|YP_001429046.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis
           subsp. holarctica FTNF002-00]
 gi|167009854|ref|ZP_02274785.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Francisella tularensis
           subsp. holarctica FSC200]
 gi|254368098|ref|ZP_04984118.1| 23S rRNA (uracil-5-)-methyltransferase [Francisella tularensis
           subsp. holarctica 257]
 gi|290953511|ref|ZP_06558132.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis
           subsp. holarctica URFT1]
 gi|295313203|ref|ZP_06803862.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis
           subsp. holarctica URFT1]
 gi|122324802|sp|Q0BKU7|RUMA_FRATO RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|122500404|sp|Q2A275|RUMA_FRATH RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|89144646|emb|CAJ79970.1| 23S rRNA (Uracil-5-)-methyltransferase [Francisella tularensis
           subsp. holarctica LVS]
 gi|115130100|gb|ABI83287.1| 23S rRNA (uracil-5-)-methyltransferase [Francisella tularensis
           subsp. holarctica OSU18]
 gi|134253908|gb|EBA53002.1| 23S rRNA (uracil-5-)-methyltransferase [Francisella tularensis
           subsp. holarctica 257]
 gi|156253584|gb|ABU62090.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Francisella tularensis
           subsp. holarctica FTNF002-00]
          Length = 449

 Score = 40.9 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 56/162 (34%), Gaps = 24/162 (14%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83
           ++++ I LL+ +    I+D   G G ++    +    VI ++ +P  V   +ET  +   
Sbjct: 289 MIKRAIELLDISENDSIIDLFCGLGNFTLPISQHAKTVIGVEGEPTMVKRAKETADN--N 346

Query: 84  QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGIS 143
             +      + L +                 S +       F + K     M +      
Sbjct: 347 NITNVNFYAANLFE-----------------SFEDKEWFNNFEYNK-----MLLDPPRAG 384

Query: 144 ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           A +V N     ++ RI+ +  +    +R A  +V  +     
Sbjct: 385 AQEVCNNIEKFNVKRIVYVSCDTAALARDAGILVNTKGYKLI 426


>gi|56707825|ref|YP_169721.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis
           subsp. tularensis SCHU S4]
 gi|110670296|ref|YP_666853.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis
           subsp. tularensis FSC198]
 gi|81597688|sp|Q5NGX1|RUMA_FRATT RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|122970996|sp|Q14IC3|RUMA_FRAT1 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|56604317|emb|CAG45338.1| 23S rRNA (Uracil-5-)-methyltransferase [Francisella tularensis
           subsp. tularensis SCHU S4]
 gi|110320629|emb|CAL08721.1| 23S rRNA (Uracil-5-)-methyltransferase [Francisella tularensis
           subsp. tularensis FSC198]
 gi|282159001|gb|ADA78392.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis
           subsp. tularensis NE061598]
          Length = 449

 Score = 40.9 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 56/162 (34%), Gaps = 24/162 (14%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83
           ++++ I LL+ +    I+D   G G ++    +    VI ++ +P  V   +ET  +   
Sbjct: 289 MIKRAIELLDISENDSIIDLFCGLGNFTLPISQHAKTVIGVEGEPTMVKRAKETADN--N 346

Query: 84  QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGIS 143
             +      + L +                 S +       F + K     M +      
Sbjct: 347 NITNVNFYAANLFE-----------------SFEDKEWFNNFEYNK-----MLLDPPRAG 384

Query: 144 ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           A +V N     ++ RI+ +  +    +R A  +V  +     
Sbjct: 385 AQEVCNNIEKFNVKRIVYVSCDTAALARDAGILVNTKGYKLI 426


>gi|297155859|gb|ADI05571.1| precorrin-6Y C5,15-methyltransferase [Streptomyces bingchenggensis
           BCW-1]
          Length = 417

 Score = 40.9 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 34/76 (44%)

Query: 29  IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLF 88
           +A L P  G ++ D   G+G  +      G+ VIA+DRD  A        R +  Q  + 
Sbjct: 263 LARLGPRVGDLVWDIGVGSGAAAVETAGFGAAVIAVDRDRDACERAAALARRFGVQLQVV 322

Query: 89  QATFSQLQDYVPDKGV 104
             T  Q+ + +P+  V
Sbjct: 323 HGTAPQVLEDLPEPDV 338


>gi|68249187|ref|YP_248299.1| SUN protein [Haemophilus influenzae 86-028NP]
 gi|68057386|gb|AAX87639.1| SUN protein [Haemophilus influenzae 86-028NP]
          Length = 450

 Score = 40.9 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 2/82 (2%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88
           LL P   + ILDA    GG +    ++    NVIALD +   +   +E +    +Q  + 
Sbjct: 253 LLEPKNEEWILDACAAPGGKTTHILELAPQANVIALDVESHRLKRVEENLARLNQQAIVV 312

Query: 89  QATFSQLQDYVPDKGVDGVVFD 110
               S+  +++ + G   V FD
Sbjct: 313 CGDASKPDEWLAEIGKSAVKFD 334


>gi|254374038|ref|ZP_04989520.1| RNA methyltransferase [Francisella novicida GA99-3548]
 gi|151571758|gb|EDN37412.1| RNA methyltransferase [Francisella novicida GA99-3548]
          Length = 449

 Score = 40.9 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 56/162 (34%), Gaps = 24/162 (14%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83
           ++++ I LL+ +    I+D   G G ++    +    VI ++ +P  V   +ET  +   
Sbjct: 289 MIKRAIELLDISENDSIIDLFCGLGNFTLPISQHAKTVIGVEGEPTMVKRAKETADN--N 346

Query: 84  QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGIS 143
             +      + L +                 S +       F + K     M +      
Sbjct: 347 NITNVNFYAANLFE-----------------SFEDKEWFNNFEYNK-----MLLDPPRAG 384

Query: 144 ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           A +V N     ++ RI+ +  +    +R A  +V  +     
Sbjct: 385 AQEVCNNIEKFNVKRIVYVSCDTATLARDAGILVNTKGYKLI 426


>gi|54298582|ref|YP_124951.1| hypothetical protein lpp2646 [Legionella pneumophila str. Paris]
 gi|53752367|emb|CAH13799.1| hypothetical protein lpp2646 [Legionella pneumophila str. Paris]
          Length = 427

 Score = 40.9 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 3/87 (3%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCGQETMRDYKEQFSL 87
           LL+  PG+ +LDA    GG +    +  S +   +ALD DP  +   ++ +     Q ++
Sbjct: 232 LLSLKPGQRVLDACCAPGGKTCHILEKESGLASCVALDLDPQRLQRVRDNLNRLDLQATV 291

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGVS 114
            +    + + +      D ++ D   S
Sbjct: 292 VEGDVLEPRSWWDGHPFDRILLDAPCS 318


>gi|54295430|ref|YP_127845.1| hypothetical protein lpl2516 [Legionella pneumophila str. Lens]
 gi|53755262|emb|CAH16756.1| hypothetical protein lpl2516 [Legionella pneumophila str. Lens]
          Length = 427

 Score = 40.9 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 3/87 (3%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCGQETMRDYKEQFSL 87
           LL+  PG+ +LDA    GG +    +  S +   +ALD DP  +   ++ +     Q ++
Sbjct: 232 LLSLKPGQRVLDACCAPGGKTCHILEKESGLASCVALDLDPQRLQRVRDNLNRLDLQATV 291

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGVS 114
            +    + + +      D ++ D   S
Sbjct: 292 VEGDVLEPRSWWDGHPFDRILLDAPCS 318


>gi|331006122|ref|ZP_08329454.1| Glycine N-methyltransferase [gamma proteobacterium IMCC1989]
 gi|330420068|gb|EGG94402.1| Glycine N-methyltransferase [gamma proteobacterium IMCC1989]
          Length = 275

 Score = 40.9 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 3/96 (3%)

Query: 29  IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLF 88
           I LLN    K ILD   G G +S S  + G +V + D     ++   E  +         
Sbjct: 62  IDLLNEHKKKKILDVATGTGFHSVSLIEGGFDVTSSDGSATMLARAFENAKSRGHILKTN 121

Query: 89  QATFSQLQDYVPDKGVDGVVFDLGVS-SMQIDCGDR 123
           QA + +L + V ++  D +V  LG S S   D  DR
Sbjct: 122 QADWRRLGESVHER-FDAIVC-LGNSFSHLHDEMDR 155


>gi|118444903|ref|YP_878837.1| rRNA methylase [Clostridium novyi NT]
 gi|118135359|gb|ABK62403.1| putative rRNA methylase [Clostridium novyi NT]
          Length = 188

 Score = 40.9 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 39/95 (41%), Gaps = 7/95 (7%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRD 80
           L ++ IA+     G + +DAT G G  +    ++      + + D    A+   ++ + D
Sbjct: 11  LAKE-IAIKKLQEGDIAVDATMGNGNDTVFLARLVGEKGKIYSFDVQSTAIENTKKRISD 69

Query: 81  YKEQ--FSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
            K      L       +  Y+ +  V  V+F+LG 
Sbjct: 70  NKINTEIELIHDGHENIDKYIKE-KVKLVMFNLGY 103


>gi|328876403|gb|EGG24766.1| hypothetical protein DFA_03010 [Dictyostelium fasciculatum]
          Length = 1122

 Score = 40.9 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 11/72 (15%), Positives = 25/72 (34%), Gaps = 13/72 (18%)

Query: 28  VIALLNPAPGKVILD-------------ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCG 74
           V++ L+    ++ +D              T G  G+++      +   A  +DP      
Sbjct: 597 VVSALDNVEARLYVDTRCVQHSLPLLESGTLGTKGHTQVILPAKTESYASQKDPVEKQTP 656

Query: 75  QETMRDYKEQFS 86
             T++ +    S
Sbjct: 657 FCTLKSFPNNLS 668


>gi|145629884|ref|ZP_01785676.1| potassium transporter peripheral membrane component [Haemophilus
           influenzae 22.1-21]
 gi|144977738|gb|EDJ87685.1| potassium transporter peripheral membrane component [Haemophilus
           influenzae 22.1-21]
          Length = 450

 Score = 40.9 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 2/82 (2%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88
           LL P   + ILDA    GG +    ++    NVIALD +   +   +E +    +Q  + 
Sbjct: 253 LLEPKNEEWILDACAAPGGKTTHILELAPQANVIALDVESHRLKRVEENLARLNQQAIVV 312

Query: 89  QATFSQLQDYVPDKGVDGVVFD 110
               S+  +++ + G   V FD
Sbjct: 313 CGDASKPDEWLAEIGKSAVKFD 334


>gi|227827996|ref|YP_002829776.1| Fmu (Sun) domain protein [Sulfolobus islandicus M.14.25]
 gi|229585265|ref|YP_002843767.1| Fmu (Sun) domain protein [Sulfolobus islandicus M.16.27]
 gi|238620224|ref|YP_002915050.1| Fmu (Sun) domain protein [Sulfolobus islandicus M.16.4]
 gi|227459792|gb|ACP38478.1| Fmu (Sun) domain protein [Sulfolobus islandicus M.14.25]
 gi|228020315|gb|ACP55722.1| Fmu (Sun) domain protein [Sulfolobus islandicus M.16.27]
 gi|238381294|gb|ACR42382.1| Fmu (Sun) domain protein [Sulfolobus islandicus M.16.4]
          Length = 339

 Score = 40.9 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 4/90 (4%)

Query: 28  VIALLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84
           V  LL+P P + I+D T  AGG   +     +    +I  D     V   ++ +     +
Sbjct: 162 VAHLLDPQPNEKIVDMTAYAGGKLTH-IYQLEPRVKLIGFDHTEKKVEKLRDLVNKMGMR 220

Query: 85  FSLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
             +++A    L +    + VD V+ D   S
Sbjct: 221 IEIYKADSRYLYEDYNIRDVDKVIIDPPCS 250


>gi|227830733|ref|YP_002832513.1| Fmu (Sun) domain protein [Sulfolobus islandicus L.S.2.15]
 gi|229581707|ref|YP_002840106.1| Fmu (Sun) domain protein [Sulfolobus islandicus Y.N.15.51]
 gi|284998246|ref|YP_003420014.1| Fmu (Sun) domain protein [Sulfolobus islandicus L.D.8.5]
 gi|227457181|gb|ACP35868.1| Fmu (Sun) domain protein [Sulfolobus islandicus L.S.2.15]
 gi|228012423|gb|ACP48184.1| Fmu (Sun) domain protein [Sulfolobus islandicus Y.N.15.51]
 gi|284446142|gb|ADB87644.1| Fmu (Sun) domain protein [Sulfolobus islandicus L.D.8.5]
 gi|323475086|gb|ADX85692.1| Fmu (Sun) domain protein [Sulfolobus islandicus REY15A]
 gi|323477818|gb|ADX83056.1| Fmu (Sun) domain protein [Sulfolobus islandicus HVE10/4]
          Length = 339

 Score = 40.9 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 4/90 (4%)

Query: 28  VIALLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84
           V  LL+P P + I+D T  AGG   +     +    +I  D     V   ++ +     +
Sbjct: 162 VAHLLDPQPNEKIVDMTAYAGGKLTH-IYQLEPRVKLIGFDHTEKKVEKLRDLVNKMGMR 220

Query: 85  FSLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
             +++A    L +    + VD V+ D   S
Sbjct: 221 IEIYKADSRYLYEDYNIRDVDKVIIDPPCS 250


>gi|47093774|ref|ZP_00231523.1| conserved hypothetical protein [Listeria monocytogenes str. 4b
           H7858]
 gi|254931605|ref|ZP_05264964.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
 gi|254993628|ref|ZP_05275818.1| hypothetical protein LmonocytoFSL_12013 [Listeria monocytogenes FSL
           J2-064]
 gi|47017861|gb|EAL08645.1| conserved hypothetical protein [Listeria monocytogenes str. 4b
           H7858]
 gi|293583158|gb|EFF95190.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
 gi|328465028|gb|EGF36307.1| hypothetical protein LM1816_09707 [Listeria monocytogenes 1816]
 gi|328474002|gb|EGF44815.1| hypothetical protein LM220_15815 [Listeria monocytogenes 220]
 gi|332312104|gb|EGJ25199.1| Methylase protein [Listeria monocytogenes str. Scott A]
          Length = 192

 Score = 40.9 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 8/86 (9%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK--EQFSL 87
             PG  ++DAT G  G+             +V+  D    AV   +  + +     Q  L
Sbjct: 18  VRPGDYVIDATCGN-GHDTLLLAELVGINGHVLGFDIQQMAVDATKARLENAGVSSQVEL 76

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGV 113
             A+ +++  Y   + V   +F+LG 
Sbjct: 77  VCASHARIPAY-TSRPVRAAIFNLGY 101


>gi|325203836|gb|ADY99289.1| putative rRNA methylase [Neisseria meningitidis M01-240355]
          Length = 188

 Score = 40.9 bits (95), Expect = 0.27,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 7/83 (8%)

Query: 36  PGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQA 90
            G   LD T G  G+   F          V A D  P A++  +  +++       L   
Sbjct: 20  EGGNALDGTAGN-GHDTLFLAQTAGIRGKVWAFDIQPQALNNTRCRLQEAGYSNVRLILD 78

Query: 91  TFSQLQDYVPDKGVDGVVFDLGV 113
               L+ YV +  ++  +F+ G 
Sbjct: 79  GHENLKQYVSEP-LNAAIFNFGW 100


>gi|309378751|emb|CBX22577.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 188

 Score = 40.9 bits (95), Expect = 0.27,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 7/83 (8%)

Query: 36  PGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQA 90
            G   LD T G  G+   F          V A D  P A++  +  +++       L   
Sbjct: 20  EGGNALDGTAGN-GHDTLFLAQTAGIRGKVWAFDIQPQALNNTRCRLQEAGYSNVRLILD 78

Query: 91  TFSQLQDYVPDKGVDGVVFDLGV 113
               L+ YV +  ++  +F+ G 
Sbjct: 79  GHENLKQYVSEP-LNAAIFNFGW 100


>gi|313668775|ref|YP_004049059.1| hypothetical protein NLA_14850 [Neisseria lactamica ST-640]
 gi|313006237|emb|CBN87699.1| conserved hypothetical protein [Neisseria lactamica 020-06]
          Length = 188

 Score = 40.9 bits (95), Expect = 0.27,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 12/95 (12%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMR 79
           LL +V+       G   LD T G  G+   F          V ALD  P A++  +  ++
Sbjct: 13  LLRQVL-----PEGGNALDGTAGN-GHDTLFLAQTAGIRGKVWALDIQPQALNNTRCRLQ 66

Query: 80  DYK-EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
           +       L       L+ YV +  ++  +F+ G 
Sbjct: 67  EAGYSNVRLILDGHENLKQYVSEP-LNAAIFNFGW 100


>gi|242092256|ref|XP_002436618.1| hypothetical protein SORBIDRAFT_10g005915 [Sorghum bicolor]
 gi|241914841|gb|EER87985.1| hypothetical protein SORBIDRAFT_10g005915 [Sorghum bicolor]
          Length = 279

 Score = 40.9 bits (95), Expect = 0.27,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 2/72 (2%)

Query: 35  APGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATF 92
           APG +++DA  G GG S  F   G  V+A++ DP  V       R Y   ++       F
Sbjct: 140 APGDLVVDAFAGCGGNSIQFAARGCYVVAVEIDPRKVELAAHNARVYGVEDRIEFIVGDF 199

Query: 93  SQLQDYVPDKGV 104
            +L   +    V
Sbjct: 200 FRLAPLLKADLV 211


>gi|257869135|ref|ZP_05648788.1| RNA methyltransferase [Enterococcus gallinarum EG2]
 gi|257803299|gb|EEV32121.1| RNA methyltransferase [Enterococcus gallinarum EG2]
          Length = 458

 Score = 40.9 bits (95), Expect = 0.28,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 33/95 (34%), Gaps = 12/95 (12%)

Query: 21  VPVLLEKVIALLNPAPGKVILD-----ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQ 75
             +L ++ I  L     + ++D      T G      S  K    V  +D  P A+   +
Sbjct: 297 TSILYDEAIKALALTKNETVVDAYCGVGTIG-----LSLAKHAKEVRGMDIIPQAIENAK 351

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFD 110
           E  R  +   + ++      +D +P     G   D
Sbjct: 352 ENARRIQANNTHYET--GTAEDLLPKWFAAGFRPD 384


>gi|119475266|ref|ZP_01615619.1| sun protein [marine gamma proteobacterium HTCC2143]
 gi|119451469|gb|EAW32702.1| sun protein [marine gamma proteobacterium HTCC2143]
          Length = 434

 Score = 40.9 bits (95), Expect = 0.28,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 3/88 (3%)

Query: 30  ALLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCGQETMRDYKEQFS 86
           AL+  APG+ +LDA    GG +    ++   +   IALD D   +   ++ +   + + S
Sbjct: 239 ALMALAPGQRVLDACCAPGGKTCHMLELQPQLKQLIALDVDHQRLQKVEQNLERLQLKAS 298

Query: 87  LFQATFSQLQDYVPDKGVDGVVFDLGVS 114
           L     S+   +  ++  D ++ D   S
Sbjct: 299 LTHGDASEPLTWWDNQPFDRILLDAPCS 326


>gi|326504188|dbj|BAJ90926.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 690

 Score = 40.9 bits (95), Expect = 0.29,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 2/69 (2%)

Query: 38  KVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQL 95
            +++D   G GG +  F    ++V A+D DP  + C Q     Y   +        F ++
Sbjct: 519 GILIDCFTGVGGNTIQFAAKCNHVFAVDIDPQKIDCAQHNATVYGVNDHIDFIIGDFIRI 578

Query: 96  QDYVPDKGV 104
             ++  + V
Sbjct: 579 APHLKGETV 587


>gi|326495568|dbj|BAJ85880.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 246

 Score = 40.9 bits (95), Expect = 0.29,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 2/69 (2%)

Query: 38  KVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQL 95
            +++D   G GG +  F    ++V A+D DP  + C Q     Y   +        F ++
Sbjct: 75  GILIDCFTGVGGNTIQFAAKCNHVFAVDIDPQKIDCAQHNATVYGVNDHIDFIIGDFIRI 134

Query: 96  QDYVPDKGV 104
             ++  + V
Sbjct: 135 APHLKGETV 143


>gi|124010362|ref|ZP_01695009.1| methyltransferase, putative [Microscilla marina ATCC 23134]
 gi|123983553|gb|EAY24015.1| methyltransferase, putative [Microscilla marina ATCC 23134]
          Length = 253

 Score = 40.9 bits (95), Expect = 0.29,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 35/84 (41%), Gaps = 6/84 (7%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84
           L++++  L P P   +LD   G G ++    K G ++  LD     +  GQ+      E+
Sbjct: 42  LDQLVDFLQPQPHHKLLDLACGKGKHAIYLSKKGLDMTGLDISENNLRYGQKFAH---ER 98

Query: 85  FSLFQATFSQLQDYVPDKGVDGVV 108
               Q     +++   +   D ++
Sbjct: 99  LQFVQQ---DMREPYQENHFDFIL 119


>gi|78066871|ref|YP_369640.1| hypothetical protein Bcep18194_A5402 [Burkholderia sp. 383]
 gi|77967616|gb|ABB08996.1| hypothetical protein Bcep18194_A5402 [Burkholderia sp. 383]
          Length = 200

 Score = 40.9 bits (95), Expect = 0.30,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 23/38 (60%)

Query: 36 PGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSC 73
          PG  +LD   G G ++R F   G  V+ALDRDP A++ 
Sbjct: 31 PGGAVLDVAAGGGRHARWFASHGHPVVALDRDPTALAA 68


>gi|229543460|ref|ZP_04432520.1| putative rRNA methylase [Bacillus coagulans 36D1]
 gi|229327880|gb|EEN93555.1| putative rRNA methylase [Bacillus coagulans 36D1]
          Length = 190

 Score = 40.9 bits (95), Expect = 0.30,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 32/90 (35%), Gaps = 10/90 (11%)

Query: 33  NPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYK--EQFS 86
               G   +DAT G  G+   F       G  V A D  P AV   +E +       +  
Sbjct: 17  AVKSGGFAIDATAGN-GHDTVFLAKRVGEGGKVFAFDIQPEAVRRTKERLEKEGLVTRAE 75

Query: 87  LFQATFSQLQDYVPD---KGVDGVVFDLGV 113
           LF        + +P      + G VF+LG 
Sbjct: 76  LFCTGHEHASECIPAALHGKISGAVFNLGY 105


>gi|238792967|ref|ZP_04636597.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
           intermedia ATCC 29909]
 gi|238727821|gb|EEQ19345.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
           intermedia ATCC 29909]
          Length = 429

 Score = 40.9 bits (95), Expect = 0.30,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85
            + LL+P  G+ ILD     GG +    +     +V+A+D D   +S   E ++  K   
Sbjct: 238 CVDLLDPQNGEQILDLCAAPGGKTTHILEAAPKAHVLAVDIDEQRLSRVNENLQRLKLHA 297

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            +        + +  D+  D ++ D   S
Sbjct: 298 VVRVGDGRTPETWCGDQQFDRILLDAPCS 326


>gi|304314357|ref|YP_003849504.1| cobalt-precorrin-6Y C(15)-methyltransferase [Methanothermobacter
           marburgensis str. Marburg]
 gi|302587816|gb|ADL58191.1| cobalt-precorrin-6Y C(15)-methyltransferase [Methanothermobacter
           marburgensis str. Marburg]
          Length = 188

 Score = 40.9 bits (95), Expect = 0.31,   Method: Composition-based stats.
 Identities = 13/77 (16%), Positives = 31/77 (40%), Gaps = 2/77 (2%)

Query: 33  NPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY--KEQFSLFQA 90
           +P  G   +D   G GG +    +    V A+D+ P A+S  +  ++ +   +  +L  +
Sbjct: 30  DPGKGDTAVDVGCGTGGVTLELSRRAGRVYAIDKSPDAISTTEMNLKKHGLGDNVTLICS 89

Query: 91  TFSQLQDYVPDKGVDGV 107
              +    +    +  +
Sbjct: 90  DAVEALSEIDALDIAVI 106


>gi|268317875|ref|YP_003291594.1| ribosomal L11 methyltransferase [Rhodothermus marinus DSM 4252]
 gi|262335409|gb|ACY49206.1| ribosomal L11 methyltransferase [Rhodothermus marinus DSM 4252]
          Length = 285

 Score = 40.9 bits (95), Expect = 0.31,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 12/89 (13%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQETMRDYK 82
           +L   +      PG  +LDA  G G  + +  K+G  + IA D DP+A    QE      
Sbjct: 140 MLPDCVE-----PGARVLDAGTGTGILTIAALKLGAGSAIAFDIDPWAAENAQENFARNG 194

Query: 83  --EQFSLFQATFSQLQDYVPDKGVDGVVF 109
             ++    Q +     + VP++  D ++ 
Sbjct: 195 VADRVEFRQGS----IEVVPERDFDLILA 219


>gi|310828099|ref|YP_003960456.1| SAM-dependent methyltransferase [Eubacterium limosum KIST612]
 gi|308739833|gb|ADO37493.1| SAM-dependent methyltransferase [Eubacterium limosum KIST612]
          Length = 208

 Score = 40.9 bits (95), Expect = 0.31,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 9/89 (10%)

Query: 41  LDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETM--RDYKEQFSLF---QATF 92
           +DAT G G  +    +       V + D    A+   ++ +     +++  LF     T 
Sbjct: 45  VDATAGTGADTCLLARSVGACGKVYSFDVQKEALKETEQRLSAEGLRDRVLLFHKGHETM 104

Query: 93  SQLQDYVPDKGVDGVVFDLGVSSMQIDCG 121
             + +   D  + G++F+LG      D  
Sbjct: 105 GSIPELRQDSKIMGIMFNLGYL-PHGDKE 132


>gi|260583337|ref|ZP_05851110.1| ribosomal RNA small subunit methyltransferase B [Haemophilus
           influenzae NT127]
 gi|260093608|gb|EEW77523.1| ribosomal RNA small subunit methyltransferase B [Haemophilus
           influenzae NT127]
          Length = 451

 Score = 40.9 bits (95), Expect = 0.31,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 2/82 (2%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88
           LL P   + ILDA    GG +    ++    NVIALD +   +   +E +    +Q  + 
Sbjct: 253 LLEPKNEEWILDACAAPGGKTTHILELAPQANVIALDVETHRLKRVEENLERLNQQAIVV 312

Query: 89  QATFSQLQDYVPDKGVDGVVFD 110
               S+  +++ + G   V FD
Sbjct: 313 CGDASKPDEWLAEIGKSAVKFD 334


>gi|75675874|ref|YP_318295.1| dimethyladenosine transferase [Nitrobacter winogradskyi Nb-255]
 gi|119365042|sp|Q3SRZ8|RSMA_NITWN RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|74420744|gb|ABA04943.1| dimethyladenosine transferase [Nitrobacter winogradskyi Nb-255]
          Length = 287

 Score = 40.5 bits (94), Expect = 0.32,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 6/61 (9%)

Query: 42  DATF-----GAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95
           DAT      G GG +R+   +G+ +VIA++RD  A+   +E    Y  + ++  A  +  
Sbjct: 48  DATVVEIGPGPGGLTRALLAVGAKHVIAIERDERALGALEEISDRYPGRLTIINADATDF 107

Query: 96  Q 96
            
Sbjct: 108 D 108


>gi|329769326|ref|ZP_08260742.1| hypothetical protein HMPREF0433_00506 [Gemella sanguinis M325]
 gi|328839129|gb|EGF88714.1| hypothetical protein HMPREF0433_00506 [Gemella sanguinis M325]
          Length = 189

 Score = 40.5 bits (94), Expect = 0.32,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 9/93 (9%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMR--D 80
           LL++VI         +++DAT G G  +    K  +  V A D    A +   + +   +
Sbjct: 11  LLKEVID-----KNSIVVDATAGNGNDTLFLAKTSAKKVFAFDVQNQATTNTNDLLEKNN 65

Query: 81  YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
             ++  +   +      Y+ +  +  VVF+LG 
Sbjct: 66  LADKCEVILDSHENFDKYIEE-NIQAVVFNLGY 97


>gi|169827326|ref|YP_001697484.1| hypothetical protein Bsph_1760 [Lysinibacillus sphaericus C3-41]
 gi|168991814|gb|ACA39354.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
          Length = 246

 Score = 40.5 bits (94), Expect = 0.32,   Method: Composition-based stats.
 Identities = 31/100 (31%), Positives = 41/100 (41%), Gaps = 4/100 (4%)

Query: 11  SAIHHTIGD-HVPVLLEKVI-ALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDP 68
           +A ++  GD H  VLL   I +LL    GK ILDA  G G  SR   K G+ V A+D   
Sbjct: 18  TANYYEYGDIHHEVLLNPTIFSLLEEVDGKHILDAGCGEGYLSRILVKKGAIVTAVDFSQ 77

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVV 108
             +    E           F      L  ++ D   D +V
Sbjct: 78  KMLDIAMERTPQQLP-VQFFHGNCENLA-FLADNQFDRIV 115


>gi|268566247|ref|XP_002639672.1| Hypothetical protein CBG12390 [Caenorhabditis briggsae]
 gi|187029521|emb|CAP31376.1| hypothetical protein CBG_12390 [Caenorhabditis briggsae AF16]
          Length = 573

 Score = 40.5 bits (94), Expect = 0.32,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 7/75 (9%)

Query: 42  DATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQL---- 95
           DA  G GG +  F   G++VIA+D DP  + C +E  R Y   +      A F  +    
Sbjct: 404 DAFTGVGGNAIQFALRGAHVIAIDMDPVRLKCARENARVYGVADYIDFICADFFDVSATW 463

Query: 96  -QDYVPDKGVDGVVF 109
             D      VD V  
Sbjct: 464 AADKKLAPKVDAVFL 478


>gi|325690968|gb|EGD32968.1| rRNA methylase [Streptococcus sanguinis SK115]
 gi|325695068|gb|EGD36971.1| rRNA methylase [Streptococcus sanguinis SK150]
          Length = 183

 Score = 40.5 bits (94), Expect = 0.33,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 6/92 (6%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82
           +    +A +      +++DAT G  G+ +    K+   V A D    AV   ++ + +  
Sbjct: 7   MAHAFLAEVVTKED-IVVDATMGN-GHDTLFLAKLAKQVYAFDIQEQAVEKTRQGLAEAD 64

Query: 83  -EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
            +   L  A    L  Y         +F+LG 
Sbjct: 65  LDNAQLILAGHETLDQYTDHFK--AAIFNLGY 94


>gi|290511109|ref|ZP_06550478.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Klebsiella sp. 1_1_55]
 gi|289776102|gb|EFD84101.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Klebsiella sp. 1_1_55]
          Length = 434

 Score = 40.5 bits (94), Expect = 0.33,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 33/90 (36%), Gaps = 3/90 (3%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82
           ++   +  L+  P   +LD   G G ++       ++V+ ++  P  V  G+E       
Sbjct: 274 MVRTALEWLDLQPEDRVLDLFCGMGNFTLPLATRAAHVVGVEGVPALVEKGRENAALNGL 333

Query: 83  EQFSLFQATFSQ--LQDYVPDKGVDGVVFD 110
              + F     +   +      G D V+ D
Sbjct: 334 SNVTFFHENLEEDVTRQAWAKHGFDKVLLD 363


>gi|254832065|ref|ZP_05236720.1| methylase protein [Listeria monocytogenes 10403S]
          Length = 191

 Score = 40.5 bits (94), Expect = 0.33,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 8/86 (9%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK--EQFSL 87
             PG  ++DAT G  G+             +V+  D    AV   +  + +     Q  L
Sbjct: 18  VRPGDYVIDATCGN-GHDTLLLAELVGINGHVLGFDIQQVAVDATKARLENAGVSSQVEL 76

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGV 113
             A+ +++  Y   + V   +F+LG 
Sbjct: 77  VCASHARIPAY-TSRPVRAAIFNLGY 101


>gi|145631966|ref|ZP_01787719.1| methionyl-tRNA formyltransferase [Haemophilus influenzae R3021]
 gi|144982380|gb|EDJ89957.1| methionyl-tRNA formyltransferase [Haemophilus influenzae R3021]
          Length = 450

 Score = 40.5 bits (94), Expect = 0.33,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 2/82 (2%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88
           LL P   + ILDA    GG +    ++    NVIALD +   +   +E +    +Q  + 
Sbjct: 253 LLEPKNEEWILDACAAPGGKTTHILELAPQANVIALDVESHRLKRVEENLERLNQQAIVV 312

Query: 89  QATFSQLQDYVPDKGVDGVVFD 110
               S+  +++ + G   V FD
Sbjct: 313 CGDASKPDEWLAEIGKSAVKFD 334


>gi|117618823|ref|YP_854784.1| ribosomal RNA small subunit methyltransferase B [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
 gi|117560230|gb|ABK37178.1| ribosomal RNA small subunit methyltransferase B [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
          Length = 430

 Score = 40.5 bits (94), Expect = 0.33,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 3/85 (3%)

Query: 33  NPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCGQETMRDYKEQFSLFQ 89
           +P PG+ +LDA    GG +    +    +   +A+D D   +   QE +        +  
Sbjct: 240 DPQPGEWVLDACAAPGGKTAHLLERQPALAGVVAVDADDNRLKRVQENLDRIGLTAKVIH 299

Query: 90  ATFSQLQDYVPDKGVDGVVFDLGVS 114
              S    + P+   D ++ D   S
Sbjct: 300 GDASTPDLWWPEGQFDRILLDAPCS 324


>gi|315303476|ref|ZP_07874063.1| methylase protein [Listeria ivanovii FSL F6-596]
 gi|313628158|gb|EFR96704.1| methylase protein [Listeria ivanovii FSL F6-596]
          Length = 191

 Score = 40.5 bits (94), Expect = 0.33,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 8/86 (9%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK--EQFSL 87
             PG  ++DAT G  G+              V+  D    A+   +  + +     Q +L
Sbjct: 18  VRPGDYVVDATCGN-GHDTLLLAELVGVNGYVLGFDIQQVAIDATRTRLENAAVSSQVNL 76

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGV 113
             A+ + + +Y  +  V   +F+LG 
Sbjct: 77  ICASHATIPEYATNP-VRAAIFNLGY 101


>gi|254820874|ref|ZP_05225875.1| hypothetical protein MintA_13150 [Mycobacterium intracellulare
          ATCC 13950]
          Length = 252

 Score = 40.5 bits (94), Expect = 0.33,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 24/55 (43%)

Query: 30 ALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84
            L   P   ++D   GAG ++    + G++V+A DRD   +      +R   + 
Sbjct: 7  DRLGIGPSSKVIDVGCGAGRHAFEAYRRGADVVAFDRDEDELRSVDTILRAMADN 61


>gi|329725493|gb|EGG61973.1| putative rRNA methylase [Staphylococcus epidermidis VCU144]
          Length = 187

 Score = 40.5 bits (94), Expect = 0.34,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 6/85 (7%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91
                +++DAT G G  +  F +   N  V   D    A+    +  +DY     L Q+ 
Sbjct: 18  INHNSIVIDATCGNGNDTAYFAQHVPNGFVYGFDIQEQAILNTHKKTKDY-SNVKLIQSG 76

Query: 92  FSQLQDYVPDKG---VDGVVFDLGV 113
               + ++P +    +D  +F+LG 
Sbjct: 77  HENAKLHIPAQHHGCIDAAIFNLGY 101


>gi|331235580|ref|XP_003330450.1| hypothetical protein PGTG_11987 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309309440|gb|EFP86031.1| hypothetical protein PGTG_11987 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 340

 Score = 40.5 bits (94), Expect = 0.34,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 38  KVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATF 92
           K+++D   GAGG S  F      VIA+D+DP  +   +   + Y   E+     A F
Sbjct: 132 KLVVDGFCGAGGNSIQFAMTCDKVIAIDKDPNKIKLARSNAKIYGVAEKIEFVCADF 188


>gi|27468352|ref|NP_764989.1| hypothetical protein SE1434 [Staphylococcus epidermidis ATCC 12228]
 gi|251811142|ref|ZP_04825615.1| rRNA methyltransferase [Staphylococcus epidermidis BCM-HMP0060]
 gi|282875819|ref|ZP_06284686.1| rRNA methylase family protein [Staphylococcus epidermidis SK135]
 gi|27315898|gb|AAO05033.1|AE016748_267 conserved hypothetical protein [Staphylococcus epidermidis ATCC
           12228]
 gi|251805362|gb|EES58019.1| rRNA methyltransferase [Staphylococcus epidermidis BCM-HMP0060]
 gi|281294844|gb|EFA87371.1| rRNA methylase family protein [Staphylococcus epidermidis SK135]
 gi|329737178|gb|EGG73432.1| putative rRNA methylase [Staphylococcus epidermidis VCU028]
          Length = 187

 Score = 40.5 bits (94), Expect = 0.34,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 6/85 (7%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91
                +++DAT G G  +  F +   N  V   D    A+    +  +DY     L Q+ 
Sbjct: 18  INHNSIVIDATCGNGNDTAYFAQHVPNGFVYGFDIQEQAILNTHKKTKDY-SNVKLIQSG 76

Query: 92  FSQLQDYVPDKG---VDGVVFDLGV 113
               + ++P +    +D  +F+LG 
Sbjct: 77  HENAKLHIPAQHHGCIDAAIFNLGY 101


>gi|332159596|ref|YP_004424875.1| proliferating-cell nucleolar protein p120 [Pyrococcus sp. NA2]
 gi|331035059|gb|AEC52871.1| proliferating-cell nucleolar protein p120 [Pyrococcus sp. NA2]
          Length = 309

 Score = 40.5 bits (94), Expect = 0.34,   Method: Composition-based stats.
 Identities = 16/100 (16%), Positives = 37/100 (37%), Gaps = 10/100 (10%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETMRDYKE-QFS 86
            L+P P +++ D     GG +    ++  N   + A D D   +   +  +         
Sbjct: 107 ALDPKPNEIVADMAAAPGGKTSYLAQLMENKGIIYAFDVDEDRLRETRLNLSRLGVLNVV 166

Query: 87  LFQATFSQLQDYVPDKGVDGVVFDL---GVSSMQIDCGDR 123
           LF ++   + +   +   D ++ D    G  ++     +R
Sbjct: 167 LFHSSSLHIDELGVE--FDKILLDAPCTGSGTIH-KNPER 203


>gi|261855171|ref|YP_003262454.1| methyltransferase small [Halothiobacillus neapolitanus c2]
 gi|261835640|gb|ACX95407.1| methyltransferase small [Halothiobacillus neapolitanus c2]
          Length = 196

 Score = 40.5 bits (94), Expect = 0.34,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 11/99 (11%)

Query: 33  NPAPGKVILDATFGAG--GYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQA 90
            P PG+ I+D   G G  G + +  +  ++VI LD+D  A        +  + Q +    
Sbjct: 52  APEPGQTIVDLGCGYGPIGLALAKAQPKADVILLDKDFVACEFAASNAK--RNQLNNVVV 109

Query: 91  TFSQLQDYVPDKGVDGVVFDL-------GVSSMQIDCGD 122
             S   D +  + VD +V ++         S M  D  +
Sbjct: 110 KPSNGLDALRGQHVDRIVSNVPAKVGKEMWSIMLWDAAE 148


>gi|206576756|ref|YP_002236864.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Klebsiella pneumoniae
           342]
 gi|226725382|sp|B5XV15|RUMA_KLEP3 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|206565814|gb|ACI07590.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Klebsiella pneumoniae
           342]
          Length = 434

 Score = 40.5 bits (94), Expect = 0.34,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 33/90 (36%), Gaps = 3/90 (3%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82
           ++   +  L+  P   +LD   G G ++       ++V+ ++  P  V  G+E       
Sbjct: 274 MVRTALEWLDLQPEDRVLDLFCGMGNFTLPLATRAAHVVGVEGVPALVEKGRENAALNGL 333

Query: 83  EQFSLFQATFSQ--LQDYVPDKGVDGVVFD 110
              + F     +   +      G D V+ D
Sbjct: 334 SNVTFFHENLEEDVTRQAWAKHGFDKVLLD 363


>gi|170586146|ref|XP_001897841.1| CLL-associated antigen KW-2 [Brugia malayi]
 gi|158594736|gb|EDP33318.1| CLL-associated antigen KW-2, putative [Brugia malayi]
          Length = 480

 Score = 40.5 bits (94), Expect = 0.34,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 2/68 (2%)

Query: 30  ALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSL 87
             +      ++LD   G GG    F   G+ VIALD DP  + C +     Y   ++ + 
Sbjct: 227 DRVVIMRDAIVLDGFAGVGGNCIQFALKGAYVIALDMDPVRLRCAKRNAEIYGVADRINF 286

Query: 88  FQATFSQL 95
               F   
Sbjct: 287 ICIDFFNF 294


>gi|315613451|ref|ZP_07888359.1| rRNA methylase [Streptococcus sanguinis ATCC 49296]
 gi|315314447|gb|EFU62491.1| rRNA methylase [Streptococcus sanguinis ATCC 49296]
          Length = 185

 Score = 40.5 bits (94), Expect = 0.35,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 10/91 (10%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82
           L +V+         +++DAT G  G+ +    K+   V A D    A+   QE +     
Sbjct: 12  LAEVV----TKED-IVVDATMGN-GHDTLFLAKLAKQVYAFDIQEQALEKTQERLDQAGM 65

Query: 83  EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
               L       L  +V +    G+ F+LG 
Sbjct: 66  TNAQLILQGHETLNQFVTEAKA-GI-FNLGY 94


>gi|289582978|ref|YP_003481444.1| methyltransferase type 11 [Natrialba magadii ATCC 43099]
 gi|289532531|gb|ADD06882.1| Methyltransferase type 11 [Natrialba magadii ATCC 43099]
          Length = 268

 Score = 40.5 bits (94), Expect = 0.35,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 11/84 (13%)

Query: 26  EKVIALLNPAPGKVILDATFGAG-GY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83
           E V+ LL PAP + ILD   G G G+ +    + G++V+ LD     ++  +E    Y +
Sbjct: 28  EDVVDLLEPAPDERILD--LGCGTGHLTDQIARSGADVVGLDASGEMLAEARER---YPD 82

Query: 84  QFSLFQATFSQLQDYVPDKGVDGV 107
           +    +   +  +D+  +   D V
Sbjct: 83  R-EFVR---ADARDFSFEAEFDAV 102


>gi|145637960|ref|ZP_01793600.1| potassium transporter peripheral membrane component [Haemophilus
           influenzae PittHH]
 gi|145268851|gb|EDK08814.1| potassium transporter peripheral membrane component [Haemophilus
           influenzae PittHH]
          Length = 450

 Score = 40.5 bits (94), Expect = 0.35,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 2/82 (2%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88
           LL P   + ILDA    GG +    ++    NVIALD +   +   +E +    +Q  + 
Sbjct: 253 LLEPKNEEWILDACAAPGGKTTHILELAPQANVIALDVESHRLKRVEENLERLNQQAIVV 312

Query: 89  QATFSQLQDYVPDKGVDGVVFD 110
               S+  +++ + G   V FD
Sbjct: 313 CGDASKPDEWLAEIGKSAVKFD 334


>gi|163848211|ref|YP_001636255.1| type 11 methyltransferase [Chloroflexus aurantiacus J-10-fl]
 gi|222526119|ref|YP_002570590.1| type 11 methyltransferase [Chloroflexus sp. Y-400-fl]
 gi|163669500|gb|ABY35866.1| Methyltransferase type 11 [Chloroflexus aurantiacus J-10-fl]
 gi|222449998|gb|ACM54264.1| Methyltransferase type 11 [Chloroflexus sp. Y-400-fl]
          Length = 271

 Score = 40.5 bits (94), Expect = 0.35,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 31/94 (32%), Gaps = 5/94 (5%)

Query: 29  IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLF 88
           I  L     + +LD   G G +S +    G  V+ LD     ++  Q    D        
Sbjct: 38  IDALGLRGVETVLDVACGGGRHSLALAARGWTVVGLDAAASVIAHAQAAATDQGLNVEFV 97

Query: 89  QATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGD 122
                QL      +  D V+  L  SS+     +
Sbjct: 98  TGDMRQLP---YHERFDVVL--LMNSSLGFFDDE 126


>gi|326917640|ref|XP_003205104.1| PREDICTED: trimethylguanosine synthase-like [Meleagris gallopavo]
          Length = 887

 Score = 40.5 bits (94), Expect = 0.35,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 34/96 (35%), Gaps = 8/96 (8%)

Query: 11  SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFA 70
           S     I +H+ V   +V    N      I+DA  G GG +  F      VIA+D DP  
Sbjct: 707 SVTPEKIAEHIAV---RVAQSFNCN---TIVDAFCGVGGNAIQFALTSKRVIAVDIDPEK 760

Query: 71  VSCGQETMRDYK--EQFSLFQATFSQLQDYVPDKGV 104
           +S  +     Y    Q       F  L   +    V
Sbjct: 761 LSLARSNAEVYGVANQIEFVCGDFMVLAADLKADVV 796


>gi|57530384|ref|NP_001006389.1| trimethylguanosine synthase [Gallus gallus]
 gi|53133774|emb|CAG32216.1| hypothetical protein RCJMB04_20d7 [Gallus gallus]
          Length = 889

 Score = 40.5 bits (94), Expect = 0.35,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 34/96 (35%), Gaps = 8/96 (8%)

Query: 11  SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFA 70
           S     I +H+ V   +V    N      I+DA  G GG +  F      VIA+D DP  
Sbjct: 709 SVTPEKIAEHIAV---RVAQSFNCN---TIVDAFCGVGGNAIQFALTSKRVIAVDIDPEK 762

Query: 71  VSCGQETMRDYK--EQFSLFQATFSQLQDYVPDKGV 104
           +S  +     Y    Q       F  L   +    V
Sbjct: 763 LSLARSNAEVYGVANQIEFVCGDFMVLAADLKADVV 798


>gi|313894507|ref|ZP_07828071.1| putative rRNA methylase [Veillonella sp. oral taxon 158 str. F0412]
 gi|313440903|gb|EFR59331.1| putative rRNA methylase [Veillonella sp. oral taxon 158 str. F0412]
          Length = 191

 Score = 40.5 bits (94), Expect = 0.35,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 38/88 (43%), Gaps = 10/88 (11%)

Query: 35  APGKVILDATFGAGGYSRSFC----KMGSNVIALDRDPFAVSCGQETMR----DYKEQFS 86
              KV++DAT G  G+   +     + G ++  +D    A++  +E ++          +
Sbjct: 20  KKAKVVVDATCGN-GHDLLYLAKRAQKGCHLFGIDIQMKAINTSKELLKTNDIAPDVSLT 78

Query: 87  LFQATFS-QLQDYVPDKGVDGVVFDLGV 113
               +    L   + D+ +D ++F+LG 
Sbjct: 79  FIHDSHDLALAHQLKDEVIDLMIFNLGY 106


>gi|153953679|ref|YP_001394444.1| rRNA methylase [Clostridium kluyveri DSM 555]
 gi|219854301|ref|YP_002471423.1| hypothetical protein CKR_0958 [Clostridium kluyveri NBRC 12016]
 gi|146346560|gb|EDK33096.1| Predicted rRNA methylase [Clostridium kluyveri DSM 555]
 gi|219568025|dbj|BAH06009.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 189

 Score = 40.5 bits (94), Expect = 0.36,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 8/85 (9%)

Query: 35  APGKVILDATFGAGGYS---RSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQF---SLF 88
             G + +DAT G G  +            V A D    A+   Q+ +  YK  F    L 
Sbjct: 22  KEGDIAVDATMGNGNDTVFLAEIVGQSGKVYAFDIQQDAIKNTQKKIA-YKNLFKYVKLI 80

Query: 89  QATFSQLQDYVPDKGVDGVVFDLGV 113
                 + +Y+ +  V  V+F+LG 
Sbjct: 81  NDGHENMDNYISE-KVKLVIFNLGY 104


>gi|212529036|ref|XP_002144675.1| RNA methylase family protein, putative [Penicillium marneffei ATCC
           18224]
 gi|210074073|gb|EEA28160.1| RNA methylase family protein, putative [Penicillium marneffei ATCC
           18224]
          Length = 242

 Score = 40.5 bits (94), Expect = 0.36,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 13/104 (12%)

Query: 11  SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDP 68
            +I + I +H+            P    V++DA  GAGG S +F K G    V A++++P
Sbjct: 57  ESIANKIAEHIS--------TSAPKDKVVLIDAFAGAGGNSIAFAKSGRWKRVYAIEKNP 108

Query: 69  FAVSCGQETMRDYK--EQFSLFQA-TFSQLQDYVPDKGVDGVVF 109
             ++C +   + Y    + + F+   F  L+ ++ D G   VVF
Sbjct: 109 AVLTCAKHNAKIYGVESKITWFEGDCFEILKTHLKDLGPYSVVF 152


>gi|169236727|ref|YP_001689927.1| S-adenosylmethionine-dependent methyltransferase [Halobacterium
          salinarum R1]
 gi|167727793|emb|CAP14581.1| S-adenosylmethionine-dependent methyltransferase [Halobacterium
          salinarum R1]
          Length = 209

 Score = 40.5 bits (94), Expect = 0.36,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 24/60 (40%)

Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83
          +  + +++L+      +LD   G G  +    K   +V  LD+ P  ++   E    +  
Sbjct: 33 MRAEALSMLDIDAEDRVLDVGCGTGFGTEGLLKHTEHVYGLDQSPHQLTKAWEKFGKHDP 92


>gi|325577101|ref|ZP_08147585.1| RNA methyltransferase Sun [Haemophilus parainfluenzae ATCC 33392]
 gi|325160683|gb|EGC72804.1| RNA methyltransferase Sun [Haemophilus parainfluenzae ATCC 33392]
          Length = 445

 Score = 40.5 bits (94), Expect = 0.37,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 2/82 (2%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88
           LL P  G++ILDA    GG +    +M     VIALD +   +   +E +    +Q ++ 
Sbjct: 247 LLEPQNGELILDACAAPGGKTTHILEMAPQAKVIALDVEAHRLKRVEENLSRLNQQATVV 306

Query: 89  QATFSQLQDYVPDKGVDGVVFD 110
               ++ + ++ + G+ G  FD
Sbjct: 307 CGDATEPEKWLSEIGLSGASFD 328


>gi|328782578|ref|XP_393721.4| PREDICTED: hypothetical protein LOC410239 [Apis mellifera]
          Length = 1110

 Score = 40.5 bits (94), Expect = 0.37,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 37/107 (34%), Gaps = 16/107 (14%)

Query: 39   VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96
             I+DA  GAGG +  F      V+A+D DP  +   +   R Y   ++       F  L 
Sbjct: 953  TIIDAFCGAGGNAIQFAFTCERVLAIDIDPVKIELARNNARIYGVDDRIEFIVGDFFTLA 1012

Query: 97   DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR--MSCSG 141
              +        + D+   S           + K+   D+   M   G
Sbjct: 1013 SKL--------IADVVFLSPPWGGPG----YAKNETFDLNNIMHPIG 1047


>gi|226355316|ref|YP_002785056.1| methyltransferase [Deinococcus deserti VCD115]
 gi|226317306|gb|ACO45302.1| putative methyltransferase [Deinococcus deserti VCD115]
          Length = 250

 Score = 40.5 bits (94), Expect = 0.37,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 30/87 (34%), Gaps = 12/87 (13%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK----------- 82
           P P    LD   G GG++R   K G  V  LD     +   +  + D             
Sbjct: 39  PVPDVTALDLACGTGGFTRELLKAGLRVTGLDGSAEMLREARVRLPDVPFVQGDLRTFEL 98

Query: 83  -EQFSLFQATFSQLQDYVPDKGVDGVV 108
            E+F L    F  L + +  + +   +
Sbjct: 99  QERFGLMTCVFDSLNNLLTPEDLGAAL 125


>gi|170746537|ref|YP_001752797.1| Fmu (Sun) domain-containing protein [Methylobacterium radiotolerans
           JCM 2831]
 gi|170653059|gb|ACB22114.1| Fmu (Sun) domain protein [Methylobacterium radiotolerans JCM 2831]
          Length = 370

 Score = 40.5 bits (94), Expect = 0.37,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 10/85 (11%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQFSLF-- 88
           P  G+ I+D   G GG + +       G+ +IA D DP  ++   E +R    Q  +   
Sbjct: 165 PRAGETIVDLCAGGGGKTLALAAETGNGARLIATDGDPRRLAPIHERLRRSGAQAEVRTP 224

Query: 89  ---QATFSQLQDYVPDKGVDGVVFD 110
              +A    L D   D  VD VV D
Sbjct: 225 RSGKARADVLADL--DGKVDRVVVD 247


>gi|15790980|ref|NP_280804.1| Hmp [Halobacterium sp. NRC-1]
 gi|10581563|gb|AAG20284.1| membrane protein [Halobacterium sp. NRC-1]
          Length = 218

 Score = 40.5 bits (94), Expect = 0.37,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 24/60 (40%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83
           +  + +++L+      +LD   G G  +    K   +V  LD+ P  ++   E    +  
Sbjct: 42  MRAEALSMLDIDAEDRVLDVGCGTGFGTEGLLKHTEHVYGLDQSPHQLTKAWEKFGKHDP 101


>gi|312068501|ref|XP_003137243.1| CLL-associated antigen KW-2 [Loa loa]
 gi|307767588|gb|EFO26822.1| CLL-associated antigen KW-2 [Loa loa]
          Length = 459

 Score = 40.5 bits (94), Expect = 0.37,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 9/87 (10%)

Query: 11  SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFA 70
           S     +  H+    ++V+         ++LD   G GG    F   G+ VIALD DP  
Sbjct: 223 SVTPERVAAHI---ADRVV----IMKDTIVLDGFAGVGGNCIQFALKGAYVIALDMDPVR 275

Query: 71  VSCGQETMRDYK--EQFSLFQATFSQL 95
           + C +     Y   ++ +     F   
Sbjct: 276 LRCAKRNAEIYGVADRINFICIDFFNF 302


>gi|264680840|ref|YP_003280750.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Comamonas
           testosteroni CNB-2]
 gi|262211356|gb|ACY35454.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Comamonas
           testosteroni CNB-2]
          Length = 475

 Score = 40.5 bits (94), Expect = 0.37,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 45/136 (33%), Gaps = 17/136 (12%)

Query: 50  YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVF 109
           ++R              D    +   + + DYK +    QATF QL       G      
Sbjct: 332 HARHILLTVG-------DGMTEAQAAKRLEDYKRRVEAGQATFQQLAQEFSKDGSARNGG 384

Query: 110 DLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVK--DLTRILGILGEEK 167
           DLG SS      +          LD      G  ++ VV++  V    L         E+
Sbjct: 385 DLGWSSPGQFVPE------FERVLDNL--QPGQISNPVVSRFGVHLIQLIERRQEKLTER 436

Query: 168 QASRIAHAIVKRRQSA 183
           +   +   +V+ R++ 
Sbjct: 437 EQREMVRNVVRERKAE 452


>gi|220925669|ref|YP_002500971.1| dimethyladenosine transferase [Methylobacterium nodulans ORS 2060]
 gi|219950276|gb|ACL60668.1| dimethyladenosine transferase [Methylobacterium nodulans ORS 2060]
          Length = 283

 Score = 40.5 bits (94), Expect = 0.37,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 46  GAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSLFQA 90
           G GG +R+    G+  VIA++RDP A+    E    Y  + ++ +A
Sbjct: 56  GPGGLTRALLAEGAARVIAIERDPRALPALAEIAAHYPGRLTVVEA 101


>gi|167946494|ref|ZP_02533568.1| hypothetical protein Epers_08068 [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 222

 Score = 40.5 bits (94), Expect = 0.37,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 2/86 (2%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCGQETMRDYKEQFSLF 88
           LL   PG+ +LDA    GG +    ++  ++   A+D DP  +    E ++    Q  L 
Sbjct: 122 LLELQPGQRVLDACAAPGGKTGHMLELADDLRLTAIDLDPQRLQRVAENLQRLGLQAELQ 181

Query: 89  QATFSQLQDYVPDKGVDGVVFDLGVS 114
               +  Q    ++  D ++ D+  S
Sbjct: 182 AGDAAHPQGRWAERQYDRILLDVPCS 207


>gi|261378773|ref|ZP_05983346.1| putative rRNA methylase [Neisseria cinerea ATCC 14685]
 gi|269144749|gb|EEZ71167.1| putative rRNA methylase [Neisseria cinerea ATCC 14685]
          Length = 188

 Score = 40.5 bits (94), Expect = 0.38,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 12/95 (12%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMR 79
           LL++ +       G   LD T G  G+   F          V A D  P A++  Q  ++
Sbjct: 13  LLQQTL-----PEGGNALDGTAGN-GHDTLFLAQTAGILGKVWAFDIQPQALTLTQCRLK 66

Query: 80  DYK-EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
           +   E   L       L+ YV +  ++  +F+ G 
Sbjct: 67  EAGYENAQLILDGHENLKQYVSEP-LNAAIFNFGW 100


>gi|329122539|ref|ZP_08251122.1| RNA methyltransferase Sun [Haemophilus aegyptius ATCC 11116]
 gi|327473144|gb|EGF18568.1| RNA methyltransferase Sun [Haemophilus aegyptius ATCC 11116]
          Length = 451

 Score = 40.5 bits (94), Expect = 0.38,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 7/91 (7%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88
           LL P   + ILDA    GG +    ++    NVIALD +   +   +E +    +Q  + 
Sbjct: 253 LLEPKNEEWILDACAAPGGKTTHILELAPQANVIALDVESHRLKRVEENLARLNQQAIVV 312

Query: 89  QATFSQLQDYVPDKG-----VDGVVFDLGVS 114
               S+  +++ + G      D ++ D   S
Sbjct: 313 CGDASKPDEWLAEIGKSAAKFDRILLDSPCS 343


>gi|229915893|ref|YP_002884539.1| 1-phosphofructokinase [Exiguobacterium sp. AT1b]
 gi|229467322|gb|ACQ69094.1| 1-phosphofructokinase [Exiguobacterium sp. AT1b]
          Length = 309

 Score = 40.5 bits (94), Expect = 0.39,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 44/125 (35%), Gaps = 8/125 (6%)

Query: 127 FQKSGPLDMRMSCSGISAS-DVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
              SGP         ++A  D V + ++  L   +     +     IA +I ++      
Sbjct: 101 LNASGPNITERELEQLTAKFDQVQEGDIVVLAGSIPSNLPDSLYRTIAESIREKGADFVV 160

Query: 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245
            TT+D    +            H     F       + EIE   + L  AE+ +K G   
Sbjct: 161 DTTKDAMLEVLALEPLMIKPNHHELGELF-------DTEIETFEEALPYAEQLVKRGAKN 213

Query: 246 IVVSF 250
           +++SF
Sbjct: 214 VIISF 218


>gi|312143625|ref|YP_003995071.1| rRNA methylase [Halanaerobium sp. 'sapolanicus']
 gi|311904276|gb|ADQ14717.1| rRNA methylase [Halanaerobium sp. 'sapolanicus']
          Length = 190

 Score = 40.5 bits (94), Expect = 0.39,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 38/82 (46%), Gaps = 5/82 (6%)

Query: 37  GKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMR--DYKEQFSLFQAT 91
             +++DAT G G  +    ++    + ++A D    AV   Q+ +   + + Q  +   +
Sbjct: 23  DSILIDATAGNGKDTLFMAELTDQNTEILAFDIQKKAVKNTQKLLEKNNLQAQVKVIHDS 82

Query: 92  FSQLQDYVPDKGVDGVVFDLGV 113
            + L  Y+ +  +  V+F+LG 
Sbjct: 83  HANLDKYINENQLSLVLFNLGY 104


>gi|304415449|ref|ZP_07396098.1| 16S rRNA m5C967 methyltransferase (SAM-dependent) [Candidatus
           Regiella insecticola LSR1]
 gi|304282713|gb|EFL91227.1| 16S rRNA m5C967 methyltransferase (SAM-dependent) [Candidatus
           Regiella insecticola LSR1]
          Length = 390

 Score = 40.5 bits (94), Expect = 0.39,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQF 85
            I LL+P  G+ ILD     GG +    ++     V+A+D D   + C +E ++  + Q 
Sbjct: 238 CIDLLHPKNGEYILDLCAAPGGKTTYILEVAPKAEVLAVDIDKQRLRCVKENLQRLQLQA 297

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            +          +  ++  D ++ D   S
Sbjct: 298 RIKIGDGRTPDIWCGEQLFDRILLDAPCS 326


>gi|77413361|ref|ZP_00789555.1| conserved hypothetical protein [Streptococcus agalactiae 515]
 gi|77160603|gb|EAO71720.1| conserved hypothetical protein [Streptococcus agalactiae 515]
          Length = 188

 Score = 40.5 bits (94), Expect = 0.39,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 32/90 (35%), Gaps = 7/90 (7%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-E 83
           L +VI         + LDAT G G  +    K    V A D    A++  +  +      
Sbjct: 13  LAEVID-----KEAITLDATMGNGNDTVFLAKSSKKVYAFDIQEEAIAKTKAKLTGQGIS 67

Query: 84  QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
              L       L+ YV    +   +F+LG 
Sbjct: 68  NVELILDGHENLEQYVHTP-LRAAIFNLGY 96


>gi|260829457|ref|XP_002609678.1| hypothetical protein BRAFLDRAFT_123579 [Branchiostoma floridae]
 gi|229295040|gb|EEN65688.1| hypothetical protein BRAFLDRAFT_123579 [Branchiostoma floridae]
          Length = 1095

 Score = 40.5 bits (94), Expect = 0.39,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 2/68 (2%)

Query: 39   VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96
            +I+DA  G GG +  F      VIA+D DP  + C +     Y   ++    Q  +  L 
Sbjct: 940  LIIDAFCGVGGNAIQFAFTCERVIAIDIDPVKLECARHNAAIYGVADRIEFLQGDYLHLA 999

Query: 97   DYVPDKGV 104
            + +    V
Sbjct: 1000 EGLKADVV 1007


>gi|183600721|ref|ZP_02962214.1| hypothetical protein PROSTU_04317 [Providencia stuartii ATCC 25827]
 gi|188019701|gb|EDU57741.1| hypothetical protein PROSTU_04317 [Providencia stuartii ATCC 25827]
          Length = 428

 Score = 40.5 bits (94), Expect = 0.40,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 41/89 (46%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85
              LL P   + ILD     GG +    ++    +V+A+D D   +   +E ++  ++Q 
Sbjct: 238 CAELLEPQNHETILDLCAAPGGKTTHILELAPKAHVVAVDIDEHRLKRVKENLQRLQQQA 297

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
           ++ Q   ++ +++   +  D ++ D   S
Sbjct: 298 AVIQGDGTKPEEWANGQLFDRILLDAPCS 326


>gi|300855630|ref|YP_003780614.1| putative methylase [Clostridium ljungdahlii DSM 13528]
 gi|300435745|gb|ADK15512.1| predicted methylase [Clostridium ljungdahlii DSM 13528]
          Length = 246

 Score = 40.5 bits (94), Expect = 0.40,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 36/95 (37%), Gaps = 5/95 (5%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSL 87
            +  L    GK ILD   G GGYSR+    G+ V A D     +   +   ++   +   
Sbjct: 36  TLEKLGDIKGKYILDLGCGEGGYSRALSHKGAIVTAADCSEVFIEYAKNKAKEEGLRIEH 95

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGD 122
                S   + + D   D V+     S M +D  D
Sbjct: 96  CVLN-SNTLNVIDDNYYDIVL----CSMMLMDVED 125


>gi|270264342|ref|ZP_06192608.1| hypothetical protein SOD_h00090 [Serratia odorifera 4Rx13]
 gi|270041478|gb|EFA14576.1| hypothetical protein SOD_h00090 [Serratia odorifera 4Rx13]
          Length = 429

 Score = 40.2 bits (93), Expect = 0.42,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85
            + LL+P  G+ ILD     GG +    +     +V+A+D D   +   +E ++  +   
Sbjct: 238 CVDLLDPQNGEQILDLCAAPGGKTTHILEAAPKAHVMAVDIDEQRLGRVKENLQRLRLHA 297

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            +        Q +  DK  D ++ D   S
Sbjct: 298 EVKLGDGRTPQQWCGDKQFDRILLDAPCS 326


>gi|146291133|ref|YP_001181557.1| sun protein [Shewanella putrefaciens CN-32]
 gi|145562823|gb|ABP73758.1| sun protein [Shewanella putrefaciens CN-32]
          Length = 429

 Score = 40.2 bits (93), Expect = 0.42,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 2/86 (2%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQFSLF 88
           LL P   ++ILDA    GG S    ++  N  ++A+D D   +   Q+ +     +  L 
Sbjct: 235 LLAPQANELILDACAAPGGKSCHLLEVEPNIKLVAVDFDAKRLERVQQNLDRLSLKAELI 294

Query: 89  QATFSQLQDYVPDKGVDGVVFDLGVS 114
               + +  +      D ++ D   S
Sbjct: 295 HGDAANIGSWWQGGLFDRILLDAPCS 320


>gi|238921411|ref|YP_002934926.1| 16S rRNA methyltransferase B [Edwardsiella ictaluri 93-146]
 gi|238870980|gb|ACR70691.1| ribosomal RNA small subunit methyltransferase B, putative
           [Edwardsiella ictaluri 93-146]
          Length = 430

 Score = 40.2 bits (93), Expect = 0.42,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 36/89 (40%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85
            + LL+P   + ILD     GG +    +     +V+A+D D   +   +E ++  ++  
Sbjct: 239 SVDLLDPQDSEQILDLCCAPGGKTTHILEAAPKAHVLAVDVDETRLKRVRENLQRLQQHA 298

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            +         ++   +  D ++ D   S
Sbjct: 299 EIRCGDGRTPDEWASGRQFDRILLDAPCS 327


>gi|23015617|ref|ZP_00055388.1| COG0030: Dimethyladenosine transferase (rRNA methylation)
          [Magnetospirillum magnetotacticum MS-1]
          Length = 276

 Score = 40.2 bits (93), Expect = 0.42,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 46 GAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSLF 88
          G GG +R+    G+ +VIA++RD  A++   E    Y  +  + 
Sbjct: 54 GPGGLTRALLDAGARHVIAIERDDRAIAIQNEIAEAYPGRLEII 97


>gi|120598069|ref|YP_962643.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella sp. W3-18-1]
 gi|143582575|sp|A1RHE4|RUMA_SHESW RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|120558162|gb|ABM24089.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shewanella sp.
           W3-18-1]
          Length = 450

 Score = 40.2 bits (93), Expect = 0.43,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 2/89 (2%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82
           ++ + +  L PAP + ILD   G G +S    KMG++VI ++     VS  +   +    
Sbjct: 292 MVAQAMDWLAPAPDERILDLFCGMGNFSLPLAKMGADVIGVEGVAEMVSQARVNAKANNL 351

Query: 83  EQFSLFQATFSQLQDYVPDKG-VDGVVFD 110
           ++ + +    S      P  G +D ++ D
Sbjct: 352 DKLTFYHGDLSADLSLEPWMGKIDKLLLD 380


>gi|146293860|ref|YP_001184284.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella putrefaciens
           CN-32]
 gi|226725391|sp|A4Y952|RUMA_SHEPC RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|145565550|gb|ABP76485.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shewanella
           putrefaciens CN-32]
          Length = 450

 Score = 40.2 bits (93), Expect = 0.43,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 2/89 (2%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82
           ++ + +  L PAP + ILD   G G +S    KMG++VI ++     VS  +   +    
Sbjct: 292 MVAQAMDWLAPAPDERILDLFCGMGNFSLPLAKMGADVIGVEGVAEMVSQARVNAKANNL 351

Query: 83  EQFSLFQATFSQLQDYVPDKG-VDGVVFD 110
           ++ + +    S      P  G +D ++ D
Sbjct: 352 DKLTFYHGDLSADLSLEPWMGKIDKLLLD 380


>gi|167462258|ref|ZP_02327347.1| conserved protein YtqB [Paenibacillus larvae subsp. larvae
           BRL-230010]
 gi|322383956|ref|ZP_08057686.1| RNA methylase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321151433|gb|EFX44620.1| RNA methylase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 196

 Score = 40.2 bits (93), Expect = 0.44,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 37/91 (40%), Gaps = 10/91 (10%)

Query: 33  NPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQ----F 85
              PG+ ++DAT G G  +     +      V   D    A+   ++ +           
Sbjct: 17  KVQPGESVIDATAGNGVDTLFLASLVGPSGKVYGFDIQKEAIRHTRDRLAQELPSSALYV 76

Query: 86  SLFQATFSQLQDYVPDK---GVDGVVFDLGV 113
           +L Q +  +L DY+P++    +   +F+LG 
Sbjct: 77  TLIQDSHHRLTDYLPEQEQGKIAAAMFNLGY 107


>gi|103488037|ref|YP_617598.1| methyltransferase type 11 [Sphingopyxis alaskensis RB2256]
 gi|98978114|gb|ABF54265.1| Methyltransferase type 11 [Sphingopyxis alaskensis RB2256]
          Length = 228

 Score = 40.2 bits (93), Expect = 0.44,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 35/97 (36%), Gaps = 16/97 (16%)

Query: 29  IALLNPAPGKVILDATFGAGGYSRSFC----KMGSNVIALDRDPFAVSCGQETMRDYKEQ 84
           +  L P  G+ ILD   G G  S +        G+ +I LD DP  +   +   R    +
Sbjct: 45  LEQLAPRNGETILDVGCGTG--SFALLMKCRAPGARIIGLDPDPDVLHRAEAKARKAGVE 102

Query: 85  FSLFQATFSQLQDYVPDKGVDGVVFDLGVSS---MQI 118
               Q   S            GV FD  VSS    Q+
Sbjct: 103 IEWRQGFASDAATL-------GVRFDKTVSSLVFHQV 132


>gi|325290000|ref|YP_004266181.1| rRNA methylase [Syntrophobotulus glycolicus DSM 8271]
 gi|324965401|gb|ADY56180.1| rRNA methylase [Syntrophobotulus glycolicus DSM 8271]
          Length = 200

 Score = 40.2 bits (93), Expect = 0.44,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 42/92 (45%), Gaps = 9/92 (9%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDYK--EQFSLF 88
            + G ++LD T G G  +    ++      V A D    AV   ++ ++D    ++  + 
Sbjct: 21  ISEGDLVLDCTAGLGRDTLFLARLVGPRGKVYAFDIQDKAVEATKKLLQDEGLLKRVEVL 80

Query: 89  QATFSQLQDYVPDKGVDGVVFDLGV---SSMQ 117
           QA  + L++++  + +   VF+LG    S  Q
Sbjct: 81  QADHADLREWIKTE-IKAAVFNLGFLPGSDHQ 111


>gi|158289899|ref|XP_001689406.1| AGAP010425-PA [Anopheles gambiae str. PEST]
 gi|157018380|gb|EDO64279.1| AGAP010425-PA [Anopheles gambiae str. PEST]
          Length = 468

 Score = 40.2 bits (93), Expect = 0.44,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 41/112 (36%), Gaps = 14/112 (12%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96
           +I+DA  G GG +  F      VIA+D DP  +   +     Y   ++       F QL 
Sbjct: 312 LIIDAFCGCGGNTIQFAFSCQKVIAIDIDPRKIEMAKHNAAVYGVADRIEFIVGDFMQL- 370

Query: 97  DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVV 148
                  VD +  D+   S           + K    ++  S   + A+ ++
Sbjct: 371 -------VDRLQADVVFLSPPWGGPG----YLKDEVYNLEQSLLPVPATQLM 411


>gi|74316034|ref|YP_313774.1| Fmu, rRNA SAM-dependent methyltransferase [Thiobacillus
           denitrificans ATCC 25259]
 gi|74055529|gb|AAZ95969.1| Fmu, rRNA SAM-dependent methyltransferase [Thiobacillus
           denitrificans ATCC 25259]
          Length = 418

 Score = 40.2 bits (93), Expect = 0.44,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 41/85 (48%), Gaps = 1/85 (1%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSLFQ 89
           LL   PG+ +LDA    GG +    ++   +++ALD D   ++  QE +   +   +L +
Sbjct: 232 LLGAKPGERVLDACAAPGGKTGHILELADVDLVALDVDAARLARVQENLDRLRLHATLVE 291

Query: 90  ATFSQLQDYVPDKGVDGVVFDLGVS 114
              ++ + +   +  D ++ D+  S
Sbjct: 292 GDAARPEAWWDGRPFDRILADVPCS 316


>gi|260893756|ref|YP_003239853.1| protein of unknown function DUF548 [Ammonifex degensii KC4]
 gi|260865897|gb|ACX53003.1| protein of unknown function DUF548 [Ammonifex degensii KC4]
          Length = 261

 Score = 40.2 bits (93), Expect = 0.45,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 37/100 (37%), Gaps = 17/100 (17%)

Query: 26  EKVIALLNPAPGKVILDATFGAGGYSRSF-----CKMGSNVIALDRDP----------FA 70
           + +I  +   PG+ +LD T G G  S +            V+ +++ P           A
Sbjct: 88  DPLIEAMALTPGESVLDCTLGLG--SEALVVSFFLGPSGRVVGVEKVPVIALLVREGLKA 145

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFD 110
           ++     + +   +  +  A        +P++  D V FD
Sbjct: 146 LASSSSPLAEAASRIEVVVADHLDYLKALPEESFDVVYFD 185


>gi|321259059|ref|XP_003194250.1| hypothetical protein CGB_E2230C [Cryptococcus gattii WM276]
 gi|317460721|gb|ADV22463.1| conserved hypothetical protein [Cryptococcus gattii WM276]
          Length = 426

 Score = 40.2 bits (93), Expect = 0.45,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 6/77 (7%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQ-- 94
           VI+DA  G GG + +F K    VIA+D D   +   +     +   ++       +++  
Sbjct: 249 VIVDAFCGVGGNAIAFAKTCERVIAIDNDITRLKLARHNALHHGVADRIEFILGDYTEFA 308

Query: 95  --LQDYVPDKGVDGVVF 109
               +  P+  VD V  
Sbjct: 309 RSFAEKNPEDKVDVVFL 325


>gi|327404248|ref|YP_004345086.1| type 11 methyltransferase [Fluviicola taffensis DSM 16823]
 gi|327319756|gb|AEA44248.1| Methyltransferase type 11 [Fluviicola taffensis DSM 16823]
          Length = 255

 Score = 40.2 bits (93), Expect = 0.46,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 36/99 (36%), Gaps = 16/99 (16%)

Query: 11  SAIHHTIGDHVPVLLEK------------VIALLNPAPGKVILDATFGAGGYSRSFCKMG 58
           S    +   H  VL ++            ++A L PA     LD   GAG +SR+    G
Sbjct: 20  STWFDSPFYH--VLYDERNDDEANEFLSNLVAYLKPAQNSTALDLACGAGRHSRALASHG 77

Query: 59  SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD 97
            +V   D  P ++    + + D    F        +L +
Sbjct: 78  LHVSGCDLSPNSIEEA-KRVSDSSLTF-FVHDMREKLDN 114


>gi|256371699|ref|YP_003109523.1| tRNA methyltransferase complex GCD14 subunit [Acidimicrobium
           ferrooxidans DSM 10331]
 gi|256008283|gb|ACU53850.1| tRNA methyltransferase complex GCD14 subunit [Acidimicrobium
           ferrooxidans DSM 10331]
          Length = 296

 Score = 40.2 bits (93), Expect = 0.46,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 5/86 (5%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQF 85
           ++  L+ APG+ +L+   G+GG +    ++G++V+A++R P      ++ +      E+ 
Sbjct: 89  ILGALDVAPGQRVLECGVGSGGLTVWLARLGASVVAVERRPDFARRAEKNVAHLGGSERV 148

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDL 111
           S+      +L D  P    D VV D+
Sbjct: 149 SIIVG---ELADVAPPGPYDRVVLDM 171


>gi|121699691|ref|XP_001268111.1| RNA methylase family protein, putative [Aspergillus clavatus NRRL
           1]
 gi|119396253|gb|EAW06685.1| RNA methylase family protein, putative [Aspergillus clavatus NRRL
           1]
          Length = 238

 Score = 40.2 bits (93), Expect = 0.46,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 54/128 (42%), Gaps = 14/128 (10%)

Query: 39  VILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMRDYK--EQFSLFQA-TFS 93
           +++DA  GAGG + +F + G    V A++++P  + C +   + Y   ++ + FQ   F 
Sbjct: 76  ILVDAFAGAGGNTIAFARTGKWKRVYAIEKNPAVLQCAKHNAKVYGVADKITWFQGDCFE 135

Query: 94  QLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANV 153
            L++ + +     +VF     S           ++     +M  +    S   + N+ ++
Sbjct: 136 ILKNQLKELAPYSIVFA----SPPWGGPG----YRSDKVFNMS-TMEPYSLQTLYNEYSL 186

Query: 154 KDLTRILG 161
                +L 
Sbjct: 187 FTEHMVLY 194


>gi|116334949|ref|YP_802444.1| hypothetical protein CRP_047 [Candidatus Carsonella ruddii PV]
 gi|116235230|dbj|BAF35078.1| hypothetical protein [Candidatus Carsonella ruddii PV]
          Length = 193

 Score = 40.2 bits (93), Expect = 0.46,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 41/108 (37%), Gaps = 13/108 (12%)

Query: 18  GDHVPVLLEKVI---ALLNPAPGKVILDATFGAGGYSR-SFCKMGSNVI-ALDRDPFAVS 72
             H  +L  +++     L        LD TFG GGY +    K    +I  +D    +  
Sbjct: 3   NKHTTILPNRLLYKKEYL--------LDFTFGCGGYIKNLILKQKFKIIYTIDVSQISYL 54

Query: 73  CGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDC 120
              +    +   F L     +++        VD +++D G++S +I  
Sbjct: 55  ISNKIYNKFFFFFRLKIKNINKIFKRFNLINVDFIIYDQGINSYEIKN 102


>gi|269839204|ref|YP_003323896.1| methyltransferase type 11 [Thermobaculum terrenum ATCC BAA-798]
 gi|269790934|gb|ACZ43074.1| Methyltransferase type 11 [Thermobaculum terrenum ATCC BAA-798]
          Length = 252

 Score = 40.2 bits (93), Expect = 0.46,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 7/87 (8%)

Query: 21  VPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRD 80
           V  +   +I LL PAPG+ +LD   G G  +    + G+ V+ +D  P  V       + 
Sbjct: 16  VSAMGADLIELLAPAPGERVLDLGCGTGDLAHRIAQRGAEVVGIDISPEMV--AMARSKY 73

Query: 81  YKEQFSLFQATFSQLQDYVPDKGVDGV 107
              +F +     + +QDY  D   D V
Sbjct: 74  PHIRFEV-----ADVQDYRSDGSFDAV 95


>gi|23015692|ref|ZP_00055461.1| COG0500: SAM-dependent methyltransferases [Magnetospirillum
          magnetotacticum MS-1]
          Length = 176

 Score = 40.2 bits (93), Expect = 0.46,   Method: Composition-based stats.
 Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 32 LNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRD 67
          L P  G  +LD   G G +SR F   G  V ALDRD
Sbjct: 20 LVPK-GGTVLDLACGGGRHSRLFLDRGHKVTALDRD 54


>gi|195392497|ref|XP_002054894.1| GJ22549 [Drosophila virilis]
 gi|194152980|gb|EDW68414.1| GJ22549 [Drosophila virilis]
          Length = 466

 Score = 40.2 bits (93), Expect = 0.47,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 41/117 (35%), Gaps = 12/117 (10%)

Query: 37  GKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQ 94
           G VI+DA  G GG +  F    S VIA+D D   ++  ++    Y    +     A F Q
Sbjct: 297 GDVIVDAFCGCGGNAIQFANTCSRVIAIDIDANKLAMAKQNALIYGVAHKIEFVHADFLQ 356

Query: 95  LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQA 151
                     D V       S      D    + K    D+      + AS ++  A
Sbjct: 357 FAS-STRLRPDVVFL-----SPPWGGPD----YLKQATFDIEQHLLPLGASQLMQHA 403


>gi|82751349|ref|YP_417090.1| hypothetical protein SAB1621 [Staphylococcus aureus RF122]
 gi|82656880|emb|CAI81310.1| conserved hypothetical protein [Staphylococcus aureus RF122]
          Length = 187

 Score = 40.2 bits (93), Expect = 0.47,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 36/85 (42%), Gaps = 6/85 (7%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91
             P  +++DAT G G  +    +     +V   D    A+   ++ ++D+    SL +  
Sbjct: 18  ITPESIVVDATCGNGNDTLFLAEQVPEGHVYGFDIQDLALENTRDKVKDF-NHVSLIKDG 76

Query: 92  FSQLQDYVPD---KGVDGVVFDLGV 113
              ++ ++ D     +   +F+LG 
Sbjct: 77  HENIEHHINDAHKGHIAAAIFNLGY 101


>gi|253579059|ref|ZP_04856330.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850002|gb|EES77961.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 187

 Score = 40.2 bits (93), Expect = 0.47,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 33/86 (38%), Gaps = 5/86 (5%)

Query: 33  NPAPGKVILDATFGAGGYS---RSFCKMGSNVIALDRDPFAVSCGQETMRD--YKEQFSL 87
               G   +DAT G G  +      C     V+A D    A++  Q+ +      E + L
Sbjct: 17  QVQEGDFCIDATMGNGNDTLLLSQLCGESGKVLAFDIQEQALTATQKRLNAGHVPENYRL 76

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGV 113
              + + + +Y     V  +VF+ G 
Sbjct: 77  LLESHANMAEYATPDSVSCIVFNFGY 102


>gi|258438327|ref|ZP_05689611.1| conserved hypothetical protein [Staphylococcus aureus A9299]
 gi|257848371|gb|EEV72362.1| conserved hypothetical protein [Staphylococcus aureus A9299]
          Length = 187

 Score = 40.2 bits (93), Expect = 0.48,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 36/85 (42%), Gaps = 6/85 (7%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91
             P  ++ DAT G G  +    +     +V   D    A+   ++ ++D+    SL +  
Sbjct: 18  ITPESIVADATCGNGNDTLFLAEQVPEGHVYGFDIQDLALENTRDKVKDF-NHVSLIKDG 76

Query: 92  FSQLQDYVPD---KGVDGVVFDLGV 113
              ++ ++ D     +D  +F+LG 
Sbjct: 77  HENIEHHINDAHKGHIDAAIFNLGY 101


>gi|121534279|ref|ZP_01666103.1| Methyltransferase type 11 [Thermosinus carboxydivorans Nor1]
 gi|121307049|gb|EAX47967.1| Methyltransferase type 11 [Thermosinus carboxydivorans Nor1]
          Length = 229

 Score = 40.2 bits (93), Expect = 0.48,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 3/84 (3%)

Query: 26  EKVIALLNPAPGKVIL-DATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84
            ++I  L      + + D   G G Y+  FC  G+ V+ +D  P  ++   E  + +  +
Sbjct: 28  REMIFDLAEVQQDMYVADVGCGTGIYTNEFCAAGARVVGIDISPEMLAIAAEKNKTWGNR 87

Query: 85  FSLFQATFSQLQDYVPDKGVDGVV 108
            S   A  + L    PD   D VV
Sbjct: 88  VSFVTADAAALP--FPDNAFDMVV 109


>gi|288553841|ref|YP_003425776.1| SAM-dependent methyltransferase MraW family [Bacillus pseudofirmus
           OF4]
 gi|288545001|gb|ADC48884.1| SAM-dependent methyltransferase MraW family [Bacillus pseudofirmus
           OF4]
          Length = 190

 Score = 40.2 bits (93), Expect = 0.49,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 43/99 (43%), Gaps = 15/99 (15%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETM- 78
           LLE+ I+     PG + +D T G  G+   F         +V ++D    A++  +  + 
Sbjct: 13  LLERSIS-----PGDIAVDCTAGN-GHDTLFLANLVGNTGHVYSVDIQETAITNTKLKVG 66

Query: 79  -RDYKEQFSLFQATFSQLQDYVPDK---GVDGVVFDLGV 113
             +   + +L Q+    +   +P +    V G +F+LG 
Sbjct: 67  EAEVANRVTLHQSGHEHISTLIPKEEYGRVKGAIFNLGY 105


>gi|229544908|ref|ZP_04433633.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis TX1322]
 gi|229309800|gb|EEN75787.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis TX1322]
 gi|295113655|emb|CBL32292.1| 23S rRNA m(5)U-1939 methyltransferase [Enterococcus sp. 7L76]
          Length = 456

 Score = 40.2 bits (93), Expect = 0.49,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 32/98 (32%), Gaps = 17/98 (17%)

Query: 23  VLLEKVIALLNPAPGKVILD-----ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77
           VL  + I  LN  P + ++D      T G      S  K    V  +D  P A+   +  
Sbjct: 297 VLYNEGIKALNLQPNETVVDAYCGVGTIG-----LSLAKQAHQVRGMDTIPAAIDDARFN 351

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFD 110
            +      +         +D +P         D +V D
Sbjct: 352 AKRLG--VTNTHYAVGTAEDLLPKWFKEGFKPDAIVVD 387


>gi|94502186|ref|ZP_01308683.1| sun protein [Oceanobacter sp. RED65]
 gi|94425689|gb|EAT10700.1| sun protein [Oceanobacter sp. RED65]
          Length = 234

 Score = 40.2 bits (93), Expect = 0.49,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 3/86 (3%)

Query: 32  LNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQFSLF 88
           + P  G++ILDA    GG +    +     + + ALD D   +    E +        + 
Sbjct: 41  MKPKEGELILDACCAPGGKTGHLLEASQGLAKITALDSDAKRLQRVHENLERLGYTAKVL 100

Query: 89  QATFSQLQDYVPDKGVDGVVFDLGVS 114
           Q      +++   +  DG++ D+  S
Sbjct: 101 QGEAQAPENWWDGQAFDGILLDVPCS 126


>gi|261601979|gb|ACX91582.1| Fmu (Sun) domain protein [Sulfolobus solfataricus 98/2]
          Length = 350

 Score = 40.2 bits (93), Expect = 0.49,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 4/90 (4%)

Query: 28  VIALLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84
           V  LL+P P + I+D T  AGG   +     +    +I  D     V   ++       +
Sbjct: 173 VAHLLDPHPNEKIVDMTAYAGGKLTH-IYQLEPRVKLIGFDHTEKKVEKLRDLANKMGMR 231

Query: 85  FSLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
             +++A    L +      VD VV D   S
Sbjct: 232 IEIYKADSRYLYEDYKIGDVDKVVIDPPCS 261


>gi|240102589|ref|YP_002958898.1| SAM-dependent tRNA/rRNA cytosine-C5 methylase [Thermococcus
           gammatolerans EJ3]
 gi|239910143|gb|ACS33034.1| SAM-dependent tRNA/rRNA cytosine-C5 methylase [Thermococcus
           gammatolerans EJ3]
          Length = 443

 Score = 40.2 bits (93), Expect = 0.49,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 35/83 (42%), Gaps = 4/83 (4%)

Query: 32  LNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQFSL 87
           L+P PG+ ++D     GG   +     K    + A D D   +   ++ +R    E   +
Sbjct: 246 LSPEPGETVVDLAAAPGGKTAHMAELMKNEGKIYAFDVDSERIKRMKQILRWAGVEIAEV 305

Query: 88  FQATFSQLQDYVPDKGVDGVVFD 110
            +    +  +++ +K  D V+ D
Sbjct: 306 KKLDGRKAPEFLGEKIADRVLLD 328


>gi|15897306|ref|NP_341911.1| Sun (fmu) protein (sun-1) [Sulfolobus solfataricus P2]
 gi|284174558|ref|ZP_06388527.1| Sun (fmu) protein (sun-1) [Sulfolobus solfataricus 98/2]
 gi|13813517|gb|AAK40701.1| Sun (fmu) protein (sun-1) [Sulfolobus solfataricus P2]
          Length = 327

 Score = 40.2 bits (93), Expect = 0.49,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 4/90 (4%)

Query: 28  VIALLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84
           V  LL+P P + I+D T  AGG   +     +    +I  D     V   ++       +
Sbjct: 150 VAHLLDPHPNEKIVDMTAYAGGKLTH-IYQLEPRVKLIGFDHTEKKVEKLRDLANKMGMR 208

Query: 85  FSLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
             +++A    L +      VD VV D   S
Sbjct: 209 IEIYKADSRYLYEDYKIGDVDKVVIDPPCS 238


>gi|319401067|gb|EFV89286.1| rRNA methylase family protein [Staphylococcus epidermidis FRI909]
          Length = 187

 Score = 40.2 bits (93), Expect = 0.50,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 6/85 (7%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91
                V++DAT G G  +  F +   N  V   D    A+    + +++Y     L Q+ 
Sbjct: 18  INHNSVVIDATCGNGNDTAYFAQHVPNGFVYGFDIQEQAILNTHKKIKNY-SNVKLIQSG 76

Query: 92  FSQLQDYVPDK---GVDGVVFDLGV 113
               + ++P +    +D  +F+LG 
Sbjct: 77  HENAKLHIPSEHHGHIDAAIFNLGY 101


>gi|319897839|ref|YP_004136036.1| 16S rRNA m5c967 methyltransferase,
           s-adenosyl-l-methionine-dependent [Haemophilus
           influenzae F3031]
 gi|317433345|emb|CBY81723.1| 16S rRNA m5C967 methyltransferase,S-adenosyl-L-methionine-dependent
           [Haemophilus influenzae F3031]
          Length = 451

 Score = 40.2 bits (93), Expect = 0.50,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 7/91 (7%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88
           LL P   + ILDA    GG +    ++    NVIALD +   +   +E +    +Q  + 
Sbjct: 253 LLEPKNEEWILDACAAPGGKTTHILELAPQANVIALDVETHRLKRVEENLERLNQQAIVV 312

Query: 89  QATFSQLQDYVPDKG-----VDGVVFDLGVS 114
               S+  +++ + G      D ++ D   S
Sbjct: 313 CGDASKPDEWLAEIGKSAAKFDRILLDAPCS 343


>gi|301155309|emb|CBW14775.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Haemophilus
           parainfluenzae T3T1]
          Length = 445

 Score = 40.2 bits (93), Expect = 0.51,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 2/82 (2%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88
           LL P  G++ILDA    GG +    +M     VIALD +   +   +E +    +Q ++ 
Sbjct: 247 LLEPQNGELILDACAAPGGKTTHILEMAPQAKVIALDVEAHRLKRVEENLTRLNQQATVV 306

Query: 89  QATFSQLQDYVPDKGVDGVVFD 110
               ++ + ++ + G++G  FD
Sbjct: 307 CGDATEPEKWLSEIGLNGASFD 328


>gi|195110597|ref|XP_001999866.1| GI24763 [Drosophila mojavensis]
 gi|193916460|gb|EDW15327.1| GI24763 [Drosophila mojavensis]
          Length = 453

 Score = 40.2 bits (93), Expect = 0.51,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96
           VI+DA  G GG +  F      VIA+D D   ++  ++    Y    +     A F Q  
Sbjct: 287 VIVDAFCGCGGNAIQFANTCGRVIAIDIDLKKLAMAKQNASIYGVAHKIDFVHADFLQFA 346


>gi|46907893|ref|YP_014282.1| hypothetical protein LMOf2365_1686 [Listeria monocytogenes serotype
           4b str. F2365]
 gi|46881162|gb|AAT04459.1| conserved hypothetical protein [Listeria monocytogenes serotype 4b
           str. F2365]
          Length = 192

 Score = 40.2 bits (93), Expect = 0.51,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 8/86 (9%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK--EQFSL 87
             PG  ++DAT G  G+             +V+  D    AV   +  + +     Q  L
Sbjct: 18  VRPGDYVIDATCGN-GHDTLLLAELVGINGHVLGFDIQQMAVDETKARLENAGVSSQVEL 76

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGV 113
             A+ +++  Y   + V   +F+LG 
Sbjct: 77  VCASHARIPAY-TSRPVRAAIFNLGY 101


>gi|117926743|ref|YP_867360.1| Fmu (Sun) domain-containing protein [Magnetococcus sp. MC-1]
 gi|117610499|gb|ABK45954.1| Fmu (Sun) domain protein [Magnetococcus sp. MC-1]
          Length = 404

 Score = 40.2 bits (93), Expect = 0.51,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 46/119 (38%), Gaps = 21/119 (17%)

Query: 15  HTIGDHVPVLLE----------KVIA-LLNPAPGKVILDATFGAGG---YSRSFCKMGSN 60
           H + DH PV LE          + IA LL P  G++++D   G GG   +  +  +    
Sbjct: 181 HLLRDH-PVFLEGLAEIQDGGSQCIAPLLQPVAGQLLVDFCAGGGGKTVHLAALMQNKGR 239

Query: 61  VIALDRDPFAVSCGQETMRDYKEQFSLF--QATFSQLQDYVPDK--GVDGVVFDLGVSS 115
           ++ALD     +      ++  + Q  +        +   ++       DGV+ D   S 
Sbjct: 240 ILALDTQEHRLKRLAPRLK--RNQIKMVQSHTIRHERDPWLSRWYGKADGVLVDAPCSG 296


>gi|260899635|ref|ZP_05908030.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio
           parahaemolyticus AQ4037]
 gi|308110556|gb|EFO48096.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio
           parahaemolyticus AQ4037]
          Length = 439

 Score = 40.2 bits (93), Expect = 0.52,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 3/90 (3%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR-DYK 82
           ++E+ I  L+P   + +LD   G G +S    K   +V+ ++     V         +  
Sbjct: 281 MVEQAIEWLDPQSDERVLDLFCGLGNFSLPIAKRAKHVVGVEGVAEMVEKASNNASLNQI 340

Query: 83  EQFSLFQATFSQLQD--YVPDKGVDGVVFD 110
                + A   Q  D      +  D V+ D
Sbjct: 341 NNAQFYHANLEQDFDGQAWAAENFDKVLLD 370


>gi|319427232|gb|ADV55306.1| RNA methyltransferase, TrmA family [Shewanella putrefaciens 200]
          Length = 450

 Score = 40.2 bits (93), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 2/89 (2%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82
           ++ + +  L PAP + ILD   G G +S    KMG+ VI ++     VS  +   +    
Sbjct: 292 MVAQAMDWLAPAPDERILDLFCGMGNFSLPLAKMGAEVIGVEGVAEMVSQARVNAKANNL 351

Query: 83  EQFSLFQATFSQLQDYVPDKG-VDGVVFD 110
           ++ + +    S      P  G +D ++ D
Sbjct: 352 DKLTFYHGDLSADLSLEPWMGKIDKLLLD 380


>gi|258545467|ref|ZP_05705701.1| ribosomal RNA small subunit methyltransferase B [Cardiobacterium
           hominis ATCC 15826]
 gi|258519300|gb|EEV88159.1| ribosomal RNA small subunit methyltransferase B [Cardiobacterium
           hominis ATCC 15826]
          Length = 418

 Score = 40.2 bits (93), Expect = 0.52,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 2/87 (2%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88
           LL P  G+ ILDA    GG +    ++     ++ALD D   +   QE +     + +L 
Sbjct: 227 LLAPQNGEHILDACAAPGGKTGHLLELAPTAELLALDHDRDRLVRVQENLDRLGLRATLK 286

Query: 89  QATFSQLQDYVPDKGVDGVVFDLGVSS 115
            A  +    +   K  D ++ D   S 
Sbjct: 287 AADAADTAAWWDGKPFDAILLDAPCSG 313


>gi|193203170|ref|NP_001122517.1| hypothetical protein T08G11.4 [Caenorhabditis elegans]
 gi|159572236|emb|CAP19342.1| C. elegans protein T08G11.4b, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 495

 Score = 40.2 bits (93), Expect = 0.53,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 42/115 (36%), Gaps = 18/115 (15%)

Query: 42  DATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQL---- 95
           DA  G GG +  F   G++VIA+D DP  + C +E  R Y          A F  +    
Sbjct: 325 DAFTGVGGNAIQFALRGAHVIAIDMDPVRLKCARENARVYGVENYIDFICADFFDVAATW 384

Query: 96  -QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS--CSGISASDV 147
             D      VD V       S          S+ K+   D+      +GI   DV
Sbjct: 385 QADKKLAPKVDAVFL-----SPPWGGP----SYLKAKEFDLATGCCPNGIDIFDV 430


>gi|17508967|ref|NP_492400.1| hypothetical protein T08G11.4 [Caenorhabditis elegans]
 gi|5824602|emb|CAB02307.2| C. elegans protein T08G11.4a, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 566

 Score = 40.2 bits (93), Expect = 0.53,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 42/115 (36%), Gaps = 18/115 (15%)

Query: 42  DATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQL---- 95
           DA  G GG +  F   G++VIA+D DP  + C +E  R Y          A F  +    
Sbjct: 396 DAFTGVGGNAIQFALRGAHVIAIDMDPVRLKCARENARVYGVENYIDFICADFFDVAATW 455

Query: 96  -QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS--CSGISASDV 147
             D      VD V       S          S+ K+   D+      +GI   DV
Sbjct: 456 QADKKLAPKVDAVFL-----SPPWGGP----SYLKAKEFDLATGCCPNGIDIFDV 501


>gi|302676902|ref|XP_003028134.1| hypothetical protein SCHCODRAFT_28617 [Schizophyllum commune H4-8]
 gi|300101822|gb|EFI93231.1| hypothetical protein SCHCODRAFT_28617 [Schizophyllum commune H4-8]
          Length = 258

 Score = 40.2 bits (93), Expect = 0.53,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96
            ILDA  G GG + +F +    VIALD DP  ++  +   + Y   ++       +    
Sbjct: 68  TILDAFCGVGGNAIAFAQTCQRVIALDTDPTRLALARHNAQIYGVADRIEFILTDYVAFA 127

Query: 97  D 97
           +
Sbjct: 128 E 128


>gi|294638022|ref|ZP_06716282.1| ribosomal RNA small subunit methyltransferase B [Edwardsiella tarda
           ATCC 23685]
 gi|291088814|gb|EFE21375.1| ribosomal RNA small subunit methyltransferase B [Edwardsiella tarda
           ATCC 23685]
          Length = 430

 Score = 40.2 bits (93), Expect = 0.53,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 36/89 (40%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQF 85
            + LL+P  G+ ILD     GG +    +      V+A+D D   +   +E ++  ++Q 
Sbjct: 239 CVDLLDPHDGEQILDLCCAPGGKTTHILEAAPKAQVLAVDADEQRLKRVRENLQRLQQQA 298

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            +          +   +  D ++ D   S
Sbjct: 299 EVRCGDGRTPDAWANGRQFDRILLDAPCS 327


>gi|323341734|ref|ZP_08081967.1| SAM-dependent methyltransferase [Erysipelothrix rhusiopathiae ATCC
           19414]
 gi|322464159|gb|EFY09352.1| SAM-dependent methyltransferase [Erysipelothrix rhusiopathiae ATCC
           19414]
          Length = 174

 Score = 40.2 bits (93), Expect = 0.54,   Method: Composition-based stats.
 Identities = 12/79 (15%), Positives = 33/79 (41%), Gaps = 2/79 (2%)

Query: 35  APGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQ 94
               +++D T G G  +        +V A+D    A+   ++  +++    +   +  S+
Sbjct: 16  NKDSIVVDMTCGNGYDTHFLANHAGHVYAIDIQEEAILSSKQLNQNF-SNITYIHSDHSR 74

Query: 95  LQDYVPDKGVDGVVFDLGV 113
           + ++       G +++LG 
Sbjct: 75  V-NFEEKAPFTGAIYNLGY 92


>gi|259047667|ref|ZP_05738068.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Granulicatella
           adiacens ATCC 49175]
 gi|259035858|gb|EEW37113.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Granulicatella
           adiacens ATCC 49175]
          Length = 467

 Score = 39.8 bits (92), Expect = 0.55,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 37/91 (40%), Gaps = 3/91 (3%)

Query: 23  VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82
           VL ++ I   +   G+ ++DA  G G  S +F +    V A++    A+   +E  +   
Sbjct: 306 VLYQQAIDAADLKGGETVVDAYCGIGTMSLAFARDAKKVYAMEIVDDAIVMAKENAKLNG 365

Query: 83  -EQFSLFQATFSQLQDYVPDKGV--DGVVFD 110
                       ++     ++G+  D +V D
Sbjct: 366 VTNVHFETGAAEKIMPRWKEEGIQPDVIVVD 396


>gi|225027670|ref|ZP_03716862.1| hypothetical protein EUBHAL_01929 [Eubacterium hallii DSM 3353]
 gi|224954984|gb|EEG36193.1| hypothetical protein EUBHAL_01929 [Eubacterium hallii DSM 3353]
          Length = 191

 Score = 39.8 bits (92), Expect = 0.55,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 33/78 (42%), Gaps = 5/78 (6%)

Query: 41  LDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETM--RDYKEQFSLFQATFSQL 95
           +DAT G G  +    K+      VI++D    A+   ++ +      ++  +   + + +
Sbjct: 26  IDATAGTGKDTVFLAKLVGEKGRVISMDIQEMAIEQTKKRLLKERLSDRAEVVLDSHAHM 85

Query: 96  QDYVPDKGVDGVVFDLGV 113
             Y     V  ++F+LG 
Sbjct: 86  DKYAQKDSVSLIMFNLGY 103


>gi|160876396|ref|YP_001555712.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella baltica
           OS195]
 gi|226725388|sp|A9KYI1|RUMA_SHEB9 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|160861918|gb|ABX50452.1| RNA methyltransferase, TrmA family [Shewanella baltica OS195]
 gi|315268586|gb|ADT95439.1| RNA methyltransferase, TrmA family [Shewanella baltica OS678]
          Length = 450

 Score = 39.8 bits (92), Expect = 0.55,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 2/89 (2%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82
           ++ + +  L PAP + ILD   G G +S    KMG++VI ++     V+  +   +    
Sbjct: 292 MVAQAMDWLAPAPDERILDLFCGMGNFSLPLAKMGADVIGVEGVAEMVTQARVNAKANNL 351

Query: 83  EQFSLFQATFSQLQDYVPDKG-VDGVVFD 110
           ++ + +    S      P  G +D ++ D
Sbjct: 352 DKLTFYHGDLSADLSLEPWMGKIDKLLLD 380


>gi|304410178|ref|ZP_07391797.1| RNA methyltransferase, TrmA family [Shewanella baltica OS183]
 gi|307302111|ref|ZP_07581869.1| RNA methyltransferase, TrmA family [Shewanella baltica BA175]
 gi|304351587|gb|EFM15986.1| RNA methyltransferase, TrmA family [Shewanella baltica OS183]
 gi|306914149|gb|EFN44570.1| RNA methyltransferase, TrmA family [Shewanella baltica BA175]
          Length = 450

 Score = 39.8 bits (92), Expect = 0.55,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 2/89 (2%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82
           ++ + +  L PAP + ILD   G G +S    KMG++VI ++     V+  +   +    
Sbjct: 292 MVAQAMDWLAPAPDERILDLFCGMGNFSLPLAKMGADVIGVEGVAEMVTQARVNAKANNL 351

Query: 83  EQFSLFQATFSQLQDYVPDKG-VDGVVFD 110
           ++ + +    S      P  G +D ++ D
Sbjct: 352 DKLTFYHGDLSADLSLEPWMGKIDKLLLD 380


>gi|217972409|ref|YP_002357160.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella baltica
           OS223]
 gi|254766921|sp|B8E8S1|RUMA_SHEB2 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|217497544|gb|ACK45737.1| RNA methyltransferase, TrmA family [Shewanella baltica OS223]
          Length = 450

 Score = 39.8 bits (92), Expect = 0.55,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 2/89 (2%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82
           ++ + +  L PAP + ILD   G G +S    KMG++VI ++     V+  +   +    
Sbjct: 292 MVAQAMDWLAPAPDERILDLFCGMGNFSLPLAKMGADVIGVEGVAEMVTQARVNAKANNL 351

Query: 83  EQFSLFQATFSQLQDYVPDKG-VDGVVFD 110
           ++ + +    S      P  G +D ++ D
Sbjct: 352 DKLTFYHGDLSADLSLEPWMGKIDKLLLD 380


>gi|147677534|ref|YP_001211749.1| tRNA(1-methyladenosine) methyltransferase and related
           methyltransferases [Pelotomaculum thermopropionicum SI]
 gi|146273631|dbj|BAF59380.1| tRNA(1-methyladenosine) methyltransferase and related
           methyltransferases [Pelotomaculum thermopropionicum SI]
          Length = 192

 Score = 39.8 bits (92), Expect = 0.55,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 33/86 (38%), Gaps = 6/86 (6%)

Query: 33  NPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK--EQFSL 87
           +   G   +DAT G G  +     +      V A D    A+   +  +       +  L
Sbjct: 19  SVRNGGTAVDATAGNGNDTLFLAGLVGPEGLVYAFDIQEKALQATRSALEKAGMSGRVVL 78

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGV 113
            +A   +++  V    VD V+F+LG 
Sbjct: 79  VRAGHEEMEKIVRGP-VDAVIFNLGY 103


>gi|319775433|ref|YP_004137921.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Haemophilus
           influenzae F3047]
 gi|317450024|emb|CBY86238.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Haemophilus
           influenzae F3047]
          Length = 451

 Score = 39.8 bits (92), Expect = 0.56,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 7/91 (7%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88
           LL P   + ILDA    GG +    ++    NVIALD +   +   +E +    +Q  + 
Sbjct: 253 LLEPKNEEWILDACAAPGGKTTHILELAPQANVIALDVESHRLKRVEENLERLNQQAIVV 312

Query: 89  QATFSQLQDYVPDKG-----VDGVVFDLGVS 114
               S+  +++ + G      D ++ D   S
Sbjct: 313 CGDASKPDEWLAEIGKSAAKFDRILLDAPCS 343


>gi|317496230|ref|ZP_07954590.1| SAM-dependent methyltransferase [Gemella moribillum M424]
 gi|316913805|gb|EFV35291.1| SAM-dependent methyltransferase [Gemella moribillum M424]
          Length = 185

 Score = 39.8 bits (92), Expect = 0.56,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 41/92 (44%), Gaps = 9/92 (9%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMR--DY 81
           L++VI         +++DAT G G  +    +  +  V A D    A+    + ++  + 
Sbjct: 12  LKEVID-----KNSIVVDATCGNGNDTLFLAQSAAKKVYAFDIQQQAIDSTLKLLQTNNC 66

Query: 82  KEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
            E+  +   + S   +Y+ +  +  VVF+LG 
Sbjct: 67  LEKCEVILDSHSNFDNYISEP-IKAVVFNLGY 97


>gi|159108485|ref|XP_001704513.1| Hypothetical protein GL50803_5613 [Giardia lamblia ATCC 50803]
 gi|157432578|gb|EDO76839.1| hypothetical protein GL50803_5613 [Giardia lamblia ATCC 50803]
          Length = 258

 Score = 39.8 bits (92), Expect = 0.56,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 59/160 (36%), Gaps = 36/160 (22%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83
           ++  V+ALL   P   ++D T   GG +R   K     +A++RDP               
Sbjct: 51  MMRTVLALLG-KPPYAVIDGTACVGGDTRLLAKHFDMTVAIERDPE-------------- 95

Query: 84  QFSLFQATFSQLQDYVPDKGVDG--VVFDLGVSSMQIDC---GDRGFSFQKSGP------ 132
                  T++ LQD +   GVD   +  D      Q          FS     P      
Sbjct: 96  -------TYALLQDNLTTWGVDAKTISGDTAALIPQFWTLIGAVATFSLYLDPPWGGVDY 148

Query: 133 ---LDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQA 169
               D++++   ++  DVVN+A    L+  L +L   +  
Sbjct: 149 RSQTDIQLTLGSLAVEDVVNRAFEAHLSMKLAVLKLPRNY 188


>gi|183982927|ref|YP_001851218.1| SAM-dependent methyltransferase [Mycobacterium marinum M]
 gi|183176253|gb|ACC41363.1| SAM-dependent methyltransferase [Mycobacterium marinum M]
          Length = 252

 Score = 39.8 bits (92), Expect = 0.57,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 24/51 (47%)

Query: 30 ALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRD 80
            L   PG  ++D   GAG ++    + G++V+A DRD   +      +R 
Sbjct: 7  DRLGIGPGATVIDVGCGAGRHAFEAYRCGADVVAFDRDAAELRAVDTMLRA 57


>gi|220928577|ref|YP_002505486.1| methyltransferase type 11 [Clostridium cellulolyticum H10]
 gi|219998905|gb|ACL75506.1| Methyltransferase type 11 [Clostridium cellulolyticum H10]
          Length = 241

 Score = 39.8 bits (92), Expect = 0.57,   Method: Composition-based stats.
 Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 5/100 (5%)

Query: 26  EKVIALL---NPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82
            + I  L      P K +LD   G GGYS    + G NV A+D D   V   +   ++  
Sbjct: 19  NEQIDFLREIAGNPPKSVLDIACGTGGYSLELDRQGYNVTAVDLDMEMVRQLEIKAKENN 78

Query: 83  EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGD 122
           +     Q    +LQ+ + D   D +VF +G S + ++  +
Sbjct: 79  QSVRFMQGNMLELQNKITD-SFD-LVFCIGNSIVHLENLE 116


>gi|54026743|ref|YP_120985.1| hypothetical protein nfa47690 [Nocardia farcinica IFM 10152]
 gi|54018251|dbj|BAD59621.1| hypothetical protein [Nocardia farcinica IFM 10152]
          Length = 356

 Score = 39.8 bits (92), Expect = 0.57,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 25/82 (30%), Gaps = 7/82 (8%)

Query: 32  LNPAPGKVILDATFGAGGYSRSFCKMGSNVI--ALDRDPFAVSCGQETM--RDYKEQFSL 87
           L   PG  + D  FG G  S +  +    +I    D D  +V    E        ++   
Sbjct: 169 LLGRPGARVADVGFGGGWSSIALAQAFPELIVDGFDVDEPSVRMATEHAATAGVGDRVRF 228

Query: 88  FQATFSQLQDYVPDKGVDGVVF 109
                +     + +   D V  
Sbjct: 229 H---LADAATALTEHAYDAVFA 247


>gi|309973883|gb|ADO97084.1| 16S rRNA m5C967 methyltransferase [Haemophilus influenzae R2846]
          Length = 451

 Score = 39.8 bits (92), Expect = 0.57,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 7/91 (7%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88
           LL P   + ILDA    GG +    ++    NVIALD +   +   +E +    +Q  + 
Sbjct: 253 LLEPKNEEWILDACAAPGGKTTHILELAPQANVIALDVESHRLKRVEENLERLNQQAIVV 312

Query: 89  QATFSQLQDYVPDKG-----VDGVVFDLGVS 114
               S+  +++ + G      D ++ D   S
Sbjct: 313 CGDASKPDEWLAEIGKSAAKFDRILLDAPCS 343


>gi|16272567|ref|NP_438784.1| sun protein [Haemophilus influenzae Rd KW20]
 gi|260581533|ref|ZP_05849340.1| ribosomal RNA small subunit methyltransferase B [Haemophilus
           influenzae RdAW]
 gi|1169716|sp|P44788|RSMB_HAEIN RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|1573620|gb|AAC22284.1| sun protein (sun) [Haemophilus influenzae Rd KW20]
 gi|260091807|gb|EEW75763.1| ribosomal RNA small subunit methyltransferase B [Haemophilus
           influenzae RdAW]
          Length = 451

 Score = 39.8 bits (92), Expect = 0.57,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 7/91 (7%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88
           LL P   + ILDA    GG +    ++    NVIALD +   +   +E +    +Q  + 
Sbjct: 253 LLEPKNEEWILDACAAPGGKTTHILELAPQANVIALDVESHRLKRVEENLERLNQQAIVV 312

Query: 89  QATFSQLQDYVPDKG-----VDGVVFDLGVS 114
               S+  +++ + G      D ++ D   S
Sbjct: 313 CGDASKPDEWLAEIGKSAAKFDRILLDAPCS 343


>gi|85716334|ref|ZP_01047307.1| dimethyladenosine transferase [Nitrobacter sp. Nb-311A]
 gi|85696850|gb|EAQ34735.1| dimethyladenosine transferase [Nitrobacter sp. Nb-311A]
          Length = 284

 Score = 39.8 bits (92), Expect = 0.57,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 46  GAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ 96
           G GG +R+    G+ +VIA++RD  A+   +E    Y ++ ++     +   
Sbjct: 57  GPGGLTRALLAAGAKHVIAIERDERALGPLEEISDRYPDRLTIVNGDATNFD 108


>gi|224542049|ref|ZP_03682588.1| hypothetical protein CATMIT_01223 [Catenibacterium mitsuokai DSM
           15897]
 gi|224524982|gb|EEF94087.1| hypothetical protein CATMIT_01223 [Catenibacterium mitsuokai DSM
           15897]
          Length = 171

 Score = 39.8 bits (92), Expect = 0.58,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 33/77 (42%), Gaps = 7/77 (9%)

Query: 38  KVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ 96
           ++ +D T G  G+ +++  +    V + D    A+   +E +    ++  L   +     
Sbjct: 19  EIGVDFTMGN-GHDTKALIECCKEVYSFDIQEEALIHTRELV---GDKAHLIHDSHENFD 74

Query: 97  DYVPDKGVDGVVFDLGV 113
            YV    + G+ F+LG 
Sbjct: 75  HYVDTFDI-GI-FNLGY 89


>gi|255020470|ref|ZP_05292535.1| 23S rRNA (uracil-5-) -methyltransferase rumA [Acidithiobacillus
           caldus ATCC 51756]
 gi|254970080|gb|EET27577.1| 23S rRNA (uracil-5-) -methyltransferase rumA [Acidithiobacillus
           caldus ATCC 51756]
          Length = 440

 Score = 39.8 bits (92), Expect = 0.59,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 4/93 (4%)

Query: 22  PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRD--PFAVSCGQETMR 79
           PVL+ + +ALL P PG+ I+D   G G ++    ++G+  + ++ D    A +     + 
Sbjct: 280 PVLVRRAMALLAPEPGEEIVDLFCGLGNFTLPMARLGARALGVEGDTRLVAQARFNAELN 339

Query: 80  DYKEQFSLFQATFSQ--LQDYVPDKGVDGVVFD 110
               +     A  +Q  L D     GV  ++ D
Sbjct: 340 GLAARAHFIAADLTQTALADLPGAAGVRKMLID 372


>gi|217964188|ref|YP_002349866.1| methylase protein [Listeria monocytogenes HCC23]
 gi|217333458|gb|ACK39252.1| methylase protein [Listeria monocytogenes HCC23]
 gi|307571245|emb|CAR84424.1| S-adenosylmethionine (SAM)-dependent methyltransferase [Listeria
           monocytogenes L99]
          Length = 191

 Score = 39.8 bits (92), Expect = 0.59,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 8/86 (9%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK--EQFSL 87
             PG  ++DAT G  G+             +V+  D    AV   +  + +     Q  L
Sbjct: 18  VRPGDYVIDATCGN-GHDTLLLAELVGINGHVLGFDIQQVAVDATKARLENAGVSSQVEL 76

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGV 113
             A+ +++  Y   + V   +F+LG 
Sbjct: 77  VCASHARIPVY-TSRPVRAAIFNLGY 101


>gi|149910033|ref|ZP_01898681.1| ribosomal protein L11 methyltransferase [Moritella sp. PE36]
 gi|149806901|gb|EDM66862.1| ribosomal protein L11 methyltransferase [Moritella sp. PE36]
          Length = 293

 Score = 39.8 bits (92), Expect = 0.59,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 15/89 (16%)

Query: 28  VIALLNPAP--GKVILDATFGAGGYSRSF--CKMGS-NVIALDRDPFAVSCGQETMRDYK 82
            +  L+     GK ++D  FG G    +    K+G+  VI +D DP A+   ++      
Sbjct: 148 CLEWLDGQDLTGKTVVD--FGCGSGILAIAALKLGAKRVIGVDIDPQAILASRDNAER-- 203

Query: 83  EQFSLFQATFSQLQDYVPDKGVDGVVFDL 111
                      Q++ Y+P    DG+  D+
Sbjct: 204 ------NGVADQIELYLPADQPDGIKADI 226


>gi|229846677|ref|ZP_04466785.1| sun protein [Haemophilus influenzae 7P49H1]
 gi|229810770|gb|EEP46488.1| sun protein [Haemophilus influenzae 7P49H1]
          Length = 451

 Score = 39.8 bits (92), Expect = 0.60,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 7/91 (7%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88
           LL P   + ILDA    GG +    ++    NVIALD +   +   +E +    +Q  + 
Sbjct: 253 LLEPKNEEWILDACAAPGGKTTHILELAPQSNVIALDVETHRLKRVEENLERLNQQAIVV 312

Query: 89  QATFSQLQDYVPDKG-----VDGVVFDLGVS 114
               S+  +++ + G      D ++ D   S
Sbjct: 313 CGDASKPDEWLAEIGKSAAKFDRILLDSPCS 343


>gi|168487256|ref|ZP_02711764.1| SAM-dependent methyltransferase [Streptococcus pneumoniae
           CDC1087-00]
 gi|183569859|gb|EDT90387.1| SAM-dependent methyltransferase [Streptococcus pneumoniae
           CDC1087-00]
          Length = 185

 Score = 39.8 bits (92), Expect = 0.60,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 10/91 (10%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82
           L +V+         +++DAT G  G+ +    K+   V A D    A+   QE +     
Sbjct: 12  LAEVV----TKED-IVVDATMGN-GHDTLFLAKLAKKVYAFDIQKQALEKTQERLHQAGL 65

Query: 83  EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
               L       L  +V      G+ F+LG 
Sbjct: 66  TNAQLILQGHETLDQFVTKAKA-GI-FNLGY 94


>gi|20093603|ref|NP_613450.1| SAM-dependent methyltransferase [Methanopyrus kandleri AV19]
 gi|19886465|gb|AAM01380.1| SAM-dependent methyltransferase [Methanopyrus kandleri AV19]
          Length = 182

 Score = 39.8 bits (92), Expect = 0.60,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 4/77 (5%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQAT 91
              G  ++DA  G G  + +  +MG  V+A+D DP  +   +    +Y   +      A 
Sbjct: 37  VEEGDFVVDAGTGNGVVAIAAAEMGCEVLAVDVDPEMIDMARRNAEEYGVEDSIEFVVAD 96

Query: 92  FSQLQDYVPDKGVDGVV 108
             +L + V    VD V+
Sbjct: 97  ARELPELVD--NVDAVL 111


>gi|167628430|ref|YP_001678929.1| sam-dependent methyltransferase, putative [Heliobacterium
          modesticaldum Ice1]
 gi|167591170|gb|ABZ82918.1| sam-dependent methyltransferase, putative [Heliobacterium
          modesticaldum Ice1]
          Length = 243

 Score = 39.8 bits (92), Expect = 0.61,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 12/69 (17%)

Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRD 80
          L +V+      PG   +DAT G  G+   F       G ++ A D    A+      + +
Sbjct: 15 LAEVLE-----PGDFAIDATAGN-GHDTLFLARQVLPGGDLWAFDIQEAAIDATARRLTE 68

Query: 81 YK--EQFSL 87
              ++F +
Sbjct: 69 AGLADRFEI 77


>gi|298368465|ref|ZP_06979783.1| rRNA methylase [Neisseria sp. oral taxon 014 str. F0314]
 gi|298282468|gb|EFI23955.1| rRNA methylase [Neisseria sp. oral taxon 014 str. F0314]
          Length = 186

 Score = 39.8 bits (92), Expect = 0.62,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 30/82 (36%), Gaps = 5/82 (6%)

Query: 35  APGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91
             G   LD T G  G+          G  V A D  P A+   +  + +      L    
Sbjct: 19  KNGDAALDGTAGN-GHDTLLLAQCVGGGKVWAFDVQPQALQQTRRRLEEAGVSAELICDG 77

Query: 92  FSQLQDYVPDKGVDGVVFDLGV 113
             +L DYV D+ +   VF+ G 
Sbjct: 78  HEKLADYV-DRPLTAAVFNFGW 98


>gi|145639370|ref|ZP_01794975.1| methionyl-tRNA formyltransferase [Haemophilus influenzae PittII]
 gi|145271417|gb|EDK11329.1| methionyl-tRNA formyltransferase [Haemophilus influenzae PittII]
          Length = 451

 Score = 39.8 bits (92), Expect = 0.62,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 7/91 (7%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88
           LL P   + ILDA    GG +    ++    NVIALD +   +   +E +    +Q  + 
Sbjct: 253 LLEPKNEEWILDACAAPGGKTTHILELAPQSNVIALDVETHRLKRVEENLERLNQQAIVV 312

Query: 89  QATFSQLQDYVPDKG-----VDGVVFDLGVS 114
               S+  +++ + G      D ++ D   S
Sbjct: 313 CGDASKPDEWLAEIGKSAAKFDRILLDSPCS 343


>gi|144897574|emb|CAM74438.1| Ribosomal RNA adenine methylase transferase [Magnetospirillum
          gryphiswaldense MSR-1]
          Length = 279

 Score = 39.8 bits (92), Expect = 0.62,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 46 GAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSLF 88
          G GG +R+     + +VIA++RD  A++   E M  Y  +  + 
Sbjct: 55 GPGGLTRALLDNDARHVIAIERDDRAIAIQNEIMAAYPGRLEII 98


>gi|16800839|ref|NP_471107.1| hypothetical protein lin1771 [Listeria innocua Clip11262]
 gi|16414258|emb|CAC97002.1| lin1771 [Listeria innocua Clip11262]
          Length = 191

 Score = 39.8 bits (92), Expect = 0.62,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 8/86 (9%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK--EQFSL 87
              G  ++DAT G  G+             +V+  D    A+   +  + +     Q  L
Sbjct: 18  VRSGDYVIDATCGN-GHDTLLLAELVGVNGHVLGFDIQQMAIDATKTRLENAGVASQVEL 76

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGV 113
             A+ + + +Y     V   +F+LG 
Sbjct: 77  VCASHALIPEYATKP-VRAAIFNLGY 101


>gi|311744474|ref|ZP_07718275.1| type 11 methyltransferase [Aeromicrobium marinum DSM 15272]
 gi|311312279|gb|EFQ82195.1| type 11 methyltransferase [Aeromicrobium marinum DSM 15272]
          Length = 237

 Score = 39.8 bits (92), Expect = 0.63,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 18/51 (35%)

Query: 30 ALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRD 80
            L    G   +D   GAG +S    + G+ V A D D   +    E    
Sbjct: 7  DRLRVGRGTRFIDVGAGAGRHSYEALRRGAEVTAFDMDEVELKNVDEMFAA 57


>gi|182626337|ref|ZP_02954092.1| conserved hypothetical protein [Clostridium perfringens D str.
           JGS1721]
 gi|177908356|gb|EDT70901.1| conserved hypothetical protein [Clostridium perfringens D str.
           JGS1721]
          Length = 183

 Score = 39.8 bits (92), Expect = 0.63,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 5/76 (6%)

Query: 39  VILDATFGAGGYSRSFC-KMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD 97
           + +DAT G  G+   F  ++   V A D    AV+  +      KE   +   +    + 
Sbjct: 25  IAIDATLGN-GHDCDFLSELFKKVYAFDIQEEAVNSYK---SKNKENVEVILDSHENFET 80

Query: 98  YVPDKGVDGVVFDLGV 113
           Y+ ++ V+ +V++LG 
Sbjct: 81  YIKEENVECIVYNLGY 96


>gi|255085586|ref|XP_002505224.1| predicted protein [Micromonas sp. RCC299]
 gi|226520493|gb|ACO66482.1| predicted protein [Micromonas sp. RCC299]
          Length = 226

 Score = 39.8 bits (92), Expect = 0.64,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 39/98 (39%), Gaps = 19/98 (19%)

Query: 35  APGKVILDATFGAGGYSRSFCKMG--------------SNVIALDRDPFAVSCGQETMR- 79
            PG  ++DAT G G  + +  ++                 V+A D    A++  +  +R 
Sbjct: 40  RPGDTVVDATMGNGWDTVALARILADLDASPAGDASKPGRVVAFDVQEDALTSTRARVRE 99

Query: 80  ----DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
               D   +  L   +  +++++V    V  V F+LG 
Sbjct: 100 MLTPDQASRVDLVLKSHERMEEHVRTDAVGVVCFNLGY 137


>gi|153839832|ref|ZP_01992499.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio
           parahaemolyticus AQ3810]
 gi|149746649|gb|EDM57637.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio
           parahaemolyticus AQ3810]
          Length = 439

 Score = 39.8 bits (92), Expect = 0.65,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 3/90 (3%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR-DYK 82
           ++E+ I  L+P   + +LD   G G +S    K   +V+ ++     V         +  
Sbjct: 281 MVEQAIEWLDPQSDERVLDLFCGLGNFSLPIAKRAKHVVGVEGVAEMVEKASNNASLNQI 340

Query: 83  EQFSLFQATFSQLQD--YVPDKGVDGVVFD 110
                + A   Q  D      +  D V+ D
Sbjct: 341 NNAQFYHANLEQDFDGQAWAAEKFDKVLLD 370


>gi|18977629|ref|NP_578986.1| nol1-nop2-sun family nucleolar protein III [Pyrococcus furiosus DSM
           3638]
 gi|18893351|gb|AAL81381.1| putative nucleolar protein III (nol1-nop2-sun family) [Pyrococcus
           furiosus DSM 3638]
          Length = 310

 Score = 39.8 bits (92), Expect = 0.65,   Method: Composition-based stats.
 Identities = 18/111 (16%), Positives = 40/111 (36%), Gaps = 14/111 (12%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETMRDYKE-QFS 86
            L+P PG+++ D     GG +    ++  N   + A D D   +   +  +         
Sbjct: 107 ALDPKPGEIVADMAAAPGGKTSYMAQLMENKGLIFAFDVDEERLKETRLNLSRLGVLNTI 166

Query: 87  LFQATFSQLQDYVPDKGVDGVVFDL---GVSSMQIDCGDRGFSFQKSGPLD 134
           L   +   + +   +   D ++ D    G  ++     +R    + +  LD
Sbjct: 167 LIHKSSLYIDEL--NMSFDKILLDAPCTGSGTIH-KNPER----KHNRTLD 210


>gi|14591177|ref|NP_143253.1| proliferating-cell nucleolar protein p120 [Pyrococcus horikoshii
           OT3]
 gi|3257797|dbj|BAA30480.1| 315aa long hypothetical proliferating-cell nucleolar protein p120
           [Pyrococcus horikoshii OT3]
          Length = 315

 Score = 39.8 bits (92), Expect = 0.65,   Method: Composition-based stats.
 Identities = 16/100 (16%), Positives = 37/100 (37%), Gaps = 10/100 (10%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKE-QFS 86
            L+P PG+++ D     GG +    ++      + A D D   +   +  +         
Sbjct: 113 ALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVI 172

Query: 87  LFQATFSQLQDYVPDKGVDGVVFDL---GVSSMQIDCGDR 123
           LF ++   + +   +   D ++ D    G  ++     +R
Sbjct: 173 LFHSSSLHIGELNVE--FDKILLDAPCTGSGTIH-KNPER 209


>gi|328474127|gb|EGF44932.1| 23S rRNA m(5)U1939 methyltransferase [Vibrio parahaemolyticus
           10329]
          Length = 439

 Score = 39.8 bits (92), Expect = 0.65,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 3/90 (3%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR-DYK 82
           ++E+ I  L+P   + +LD   G G +S    K   +V+ ++     V         +  
Sbjct: 281 MVEQAIEWLDPQSDERVLDLFCGLGNFSLPIAKRAKHVVGVEGVAEMVEKASNNASLNQI 340

Query: 83  EQFSLFQATFSQLQD--YVPDKGVDGVVFD 110
                + A   Q  D      +  D V+ D
Sbjct: 341 NNAQFYHANLEQDFDGQAWAAEKFDKVLLD 370


>gi|316976160|gb|EFV59496.1| 3-demethylubiquinone-9 3-methyltransferase [Trichinella spiralis]
          Length = 346

 Score = 39.8 bits (92), Expect = 0.65,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 2/79 (2%)

Query: 33  NPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQE--TMRDYKEQFSLFQA 90
            P  G  ILD   GAG  S S  ++G+ V+ +D +   ++  +E   +    E    F  
Sbjct: 156 KPLNGVKILDVGCGAGIMSESLARLGATVVGIDANSEGIALAKEHQRLAGLGENLKYFVC 215

Query: 91  TFSQLQDYVPDKGVDGVVF 109
               +   V +   D +V 
Sbjct: 216 DVESVAQSVGESSFDAIVA 234


>gi|212634201|ref|YP_002310726.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella
           piezotolerans WP3]
 gi|226725392|sp|B8CJP2|RUMA_SHEPW RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|212555685|gb|ACJ28139.1| RNA methyltransferase, TrmA family [Shewanella piezotolerans WP3]
          Length = 445

 Score = 39.8 bits (92), Expect = 0.65,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 2/89 (2%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82
           ++ + +  L P   + +LD   G G +S    K G+ VI ++  P  V       +    
Sbjct: 287 MVNQAVDWLAPQANERVLDLFCGIGNFSLPLAKSGAEVIGVEGVPAMVEQATVNAKGAAL 346

Query: 83  EQFSLFQATFS-QLQDYVPDKGVDGVVFD 110
           ++ S + A  S  L        VD ++ D
Sbjct: 347 DKVSFYHADLSADLSQQPWLGKVDKMLID 375


>gi|268315920|ref|YP_003289639.1| Fmu (Sun) domain-containing protein [Rhodothermus marinus DSM 4252]
 gi|262333454|gb|ACY47251.1| Fmu (Sun) domain protein [Rhodothermus marinus DSM 4252]
          Length = 434

 Score = 39.8 bits (92), Expect = 0.66,   Method: Composition-based stats.
 Identities = 15/98 (15%), Positives = 31/98 (31%), Gaps = 13/98 (13%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDR---DPFAVSCGQET 77
           LL +        PG+V++D   G GG   +  +  +    + A D        +      
Sbjct: 231 LLTEA------RPGQVVVDGCAGGGGKTLHLAALMEGKGRLYAFDIHEARLRELRPRTRR 284

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSS 115
              +  +  +     + +   +     D V+ D   S 
Sbjct: 285 ADVHNVRLHVLPHNRASIVRRL-YGKADAVLVDAPCSG 321


>gi|223986106|ref|ZP_03636129.1| hypothetical protein HOLDEFILI_03437 [Holdemania filiformis DSM
           12042]
 gi|223961911|gb|EEF66400.1| hypothetical protein HOLDEFILI_03437 [Holdemania filiformis DSM
           12042]
          Length = 176

 Score = 39.8 bits (92), Expect = 0.66,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 6/86 (6%)

Query: 41  LDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP 100
           +DAT G G  +     +  NV+ALD    AV   Q+    +    ++ QA  ++L  ++ 
Sbjct: 24  VDATCGGGNDTVFLAGLADNVLALDIQLEAVRKTQKKTAGF-TNVTVIQADHAELARWLT 82

Query: 101 DKGVDGVVFDLGV----SSMQIDCGD 122
                 +VF+LG     SS  I   +
Sbjct: 83  QP-AQIIVFNLGYLPYSSSPLITTPE 107


>gi|320167535|gb|EFW44434.1| Tgs1 protein [Capsaspora owczarzaki ATCC 30864]
          Length = 522

 Score = 39.8 bits (92), Expect = 0.67,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 2/69 (2%)

Query: 38  KVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQL 95
            V++DA  G GG +  F      VIA+D DP  + C +   R Y   ++     A F  +
Sbjct: 336 GVVVDAFCGVGGNTIQFALSSHFVIAIDIDPRKIECARHNARLYGVEDRIEFIVADFFAV 395

Query: 96  QDYVPDKGV 104
              +    V
Sbjct: 396 APRLRADVV 404


>gi|296104996|ref|YP_003615142.1| 16S rRNA methyltransferase B [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295059455|gb|ADF64193.1| 16S rRNA methyltransferase B [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 438

 Score = 39.8 bits (92), Expect = 0.67,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 37/89 (41%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85
            +  L P  G+ ILD     GG +    ++    +V+A+D D   +S   + ++    + 
Sbjct: 247 CMTWLEPKNGEQILDLCAAPGGKTTHILEVAPQASVMAVDIDDQRLSRVYDNLKRLGMKA 306

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            + Q    +  ++  +   D ++ D   S
Sbjct: 307 QVKQGDGRKPTEWCGETQFDRILLDAPCS 335


>gi|293391667|ref|ZP_06636001.1| methionyl-tRNA formyltransferase [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290952201|gb|EFE02320.1| methionyl-tRNA formyltransferase [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 451

 Score = 39.8 bits (92), Expect = 0.67,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 2/82 (2%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88
           LL P  G++ILDA    GG +    ++     V+ALD +   +   +E +   ++Q ++ 
Sbjct: 248 LLQPQNGELILDACAAPGGKTTHILELAPQAEVVALDVEENRLQRVKENLARMQQQATIV 307

Query: 89  QATFSQLQDYVPDKGVDGVVFD 110
               +  + ++   G   V FD
Sbjct: 308 CGDAANPRAWLTKLGKSAVRFD 329


>gi|261866823|ref|YP_003254745.1| methionyl-tRNA formyltransferase [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261412155|gb|ACX81526.1| methionyl-tRNA formyltransferase [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 451

 Score = 39.8 bits (92), Expect = 0.67,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 2/82 (2%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88
           LL P  G++ILDA    GG +    ++     V+ALD +   +   +E +   ++Q ++ 
Sbjct: 248 LLQPQNGELILDACAAPGGKTTHILELAPQAEVVALDVEENRLQRVKENLARMQQQATIV 307

Query: 89  QATFSQLQDYVPDKGVDGVVFD 110
               +  + ++   G   V FD
Sbjct: 308 CGDAANPRAWLTKLGKSAVRFD 329


>gi|323135841|ref|ZP_08070924.1| dimethyladenosine transferase [Methylocystis sp. ATCC 49242]
 gi|322398932|gb|EFY01451.1| dimethyladenosine transferase [Methylocystis sp. ATCC 49242]
          Length = 300

 Score = 39.8 bits (92), Expect = 0.68,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 46  GAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ--DYVPDKG 103
           G GG +R+    G+ VIA++RD   +    E    Y  + ++ +    ++   + V   G
Sbjct: 73  GPGGLTRALLAQGARVIAVERDARCLPALAEIAAHYPGRLTVVEGDALEIDAAELVRAHG 132

Query: 104 VDG 106
             G
Sbjct: 133 AGG 135


>gi|260893457|ref|YP_003239554.1| Methyltransferase type 11 [Ammonifex degensii KC4]
 gi|260865598|gb|ACX52704.1| Methyltransferase type 11 [Ammonifex degensii KC4]
          Length = 225

 Score = 39.8 bits (92), Expect = 0.69,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 4/78 (5%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQA 90
           LL+  PG+ +LDA  G G  SR+    G+ V  +D  P  ++  +E  +         + 
Sbjct: 34  LLSLRPGEKVLDAGCGTGVVSRALAAAGAEVTGIDISPAMLAVARE--KGAGGNIVYLEG 91

Query: 91  TFSQLQDYVPDKGVDGVV 108
             S L    PD   D VV
Sbjct: 92  DMSSLP--FPDASFDAVV 107


>gi|238019301|ref|ZP_04599727.1| hypothetical protein VEIDISOL_01165 [Veillonella dispar ATCC 17748]
 gi|237864000|gb|EEP65290.1| hypothetical protein VEIDISOL_01165 [Veillonella dispar ATCC 17748]
          Length = 191

 Score = 39.8 bits (92), Expect = 0.69,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 39/84 (46%), Gaps = 10/84 (11%)

Query: 39  VILDATFGAGGYSRSFC----KMGSNVIALDRDPFAVSCGQETMR----DYKEQFSLFQA 90
           V++DAT G  G+   +     + G ++  +D    A++  QE ++          +    
Sbjct: 24  VVVDATCGN-GHDLLYLAERARKGCHLYGIDIQMKAINSSQELLQSNDIAEDVSLTFIHD 82

Query: 91  TFSQ-LQDYVPDKGVDGVVFDLGV 113
           +  + L + + D+ +D ++F+LG 
Sbjct: 83  SHDRALVNQLKDEVIDLMIFNLGY 106


>gi|313891156|ref|ZP_07824775.1| methyltransferase domain protein [Streptococcus pseudoporcinus SPIN
           20026]
 gi|313120519|gb|EFR43639.1| methyltransferase domain protein [Streptococcus pseudoporcinus SPIN
           20026]
          Length = 273

 Score = 39.8 bits (92), Expect = 0.71,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 44/91 (48%), Gaps = 8/91 (8%)

Query: 19  DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQET 77
           +H   LL+ + + L P     +LD   G G Y+R+  +  S  ++A D    ++    + 
Sbjct: 73  NH---LLQAINSYLQPDRPITLLDVACGEGYYARALAQETSRQILAFDLSKDSILLAAK- 128

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGVDGVV 108
            +D +++ + F    ++L   + D+ VD ++
Sbjct: 129 -KDLQKRVTWFVGDLAKLP--LADQSVDVIL 156


>gi|91977439|ref|YP_570098.1| dimethyladenosine transferase [Rhodopseudomonas palustris BisB5]
 gi|123735336|sp|Q135P2|RSMA_RHOPS RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|91683895|gb|ABE40197.1| dimethyladenosine transferase [Rhodopseudomonas palustris BisB5]
          Length = 287

 Score = 39.8 bits (92), Expect = 0.71,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 6/61 (9%)

Query: 42  DATF-----GAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95
           D T      G GG +R+    G+  VIA++RD  A+   +E    Y  +  +  A     
Sbjct: 48  DVTVVEIGPGPGGLTRALLATGARRVIAIERDERALGALEEIAAHYPGRLEIVCADAMDF 107

Query: 96  Q 96
            
Sbjct: 108 D 108


>gi|284031682|ref|YP_003381613.1| deoxyribonuclease [Kribbella flavida DSM 17836]
 gi|283810975|gb|ADB32814.1| deoxyribonuclease/rho motif-related TRAM [Kribbella flavida DSM
           17836]
          Length = 389

 Score = 39.4 bits (91), Expect = 0.71,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 4/90 (4%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83
           L++ V++ L P  G+  LD   G G ++    + G  V+A++ D  AV   +  + D   
Sbjct: 229 LVDAVLSGLEPREGETALDLYSGVGLFAAFLAEAGCGVLAVEGDRDAVKNARRNLHDLTG 288

Query: 84  QFSLFQATFSQLQDYVPDKG---VDGVVFD 110
             +L Q    ++ +    +G   VD VV D
Sbjct: 289 -VTLEQGDVDRVLNRAVAQGLEHVDLVVLD 317


>gi|149375620|ref|ZP_01893389.1| Fmu, rRNA SAM-dependent methyltransferase [Marinobacter algicola
           DG893]
 gi|149360022|gb|EDM48477.1| Fmu, rRNA SAM-dependent methyltransferase [Marinobacter algicola
           DG893]
          Length = 433

 Score = 39.4 bits (91), Expect = 0.71,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 3/90 (3%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMRDYKEQ 84
              L++ APG+ +LDA    GG + +  +       V+A+D     +   QE +      
Sbjct: 235 CTTLMDLAPGQRVLDACAAPGGKTCAILESCGELEEVVAIDESADRLPRVQENLERLDLM 294

Query: 85  FSLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            +L QA  + +  +   K  D ++ D+  S
Sbjct: 295 ATLKQADAADIDQWWDRKPFDRILLDVPCS 324


>gi|120596855|ref|YP_961429.1| sun protein [Shewanella sp. W3-18-1]
 gi|120556948|gb|ABM22875.1| sun protein [Shewanella sp. W3-18-1]
          Length = 429

 Score = 39.4 bits (91), Expect = 0.72,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 2/86 (2%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88
           LL P   ++ILDA    GG S    ++     ++A+D D   +   Q+ +     +  L 
Sbjct: 235 LLAPQVNELILDACAAPGGKSCHLLELEPSIKLVAVDFDAKRLERVQQNLDRLSLKAELI 294

Query: 89  QATFSQLQDYVPDKGVDGVVFDLGVS 114
               + +  +      D ++ D   S
Sbjct: 295 HGDAANIGSWWQGGLFDRILLDAPCS 320


>gi|146329596|ref|YP_001209088.1| rRNA SAM-dependent methyltransferase, Fmu [Dichelobacter nodosus
           VCS1703A]
 gi|146233066|gb|ABQ14044.1| rRNA SAM-dependent methyltransferase, Fmu [Dichelobacter nodosus
           VCS1703A]
          Length = 418

 Score = 39.4 bits (91), Expect = 0.72,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 33/87 (37%), Gaps = 2/87 (2%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQFSLF 88
           LL P  G+ ILDA    GG +    ++     +IALD     +   QE ++         
Sbjct: 225 LLQPRAGERILDACAAPGGKTGHLLELAPQCTLIALDHAADRLERVQENLKRLHLNAHCQ 284

Query: 89  QATFSQLQDYVPDKGVDGVVFDLGVSS 115
            A  + L  +      D ++ D   S 
Sbjct: 285 TADAADLASWYDGHAFDAILLDAPCSG 311


>gi|119855126|ref|YP_935731.1| methyltransferase type 11 [Mycobacterium sp. KMS]
 gi|119697844|gb|ABL94916.1| Methyltransferase type 11 [Mycobacterium sp. KMS]
          Length = 208

 Score = 39.4 bits (91), Expect = 0.72,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 7/75 (9%)

Query: 45  FGAG-GY-SRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYV- 99
            G G GY S+   +    + + A+D DP  +   +  +  Y ++  L   + + L+  + 
Sbjct: 42  LGCGSGYGSQLVLQRFRAARIDAVDLDPAMIERARAQLAPYGDRVHLATGSATDLRAALN 101

Query: 100 -PDKGVDGVVFDLGV 113
             D   D V FD G+
Sbjct: 102 ADDGSYDAV-FDFGI 115


>gi|289209431|ref|YP_003461497.1| sun protein [Thioalkalivibrio sp. K90mix]
 gi|288945062|gb|ADC72761.1| sun protein [Thioalkalivibrio sp. K90mix]
          Length = 451

 Score = 39.4 bits (91), Expect = 0.73,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 3/87 (3%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDYKEQFSL 87
           LL+P PG+ +LDA    GG +    +       + ALD D   +   +E +        L
Sbjct: 254 LLDPQPGERVLDACAAPGGKTGHLLERAGGDLQLTALDSDAERLVQVRENLDRLGFAAQL 313

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGVS 114
             A  +    +   +  D ++ D+  S
Sbjct: 314 TAADVADPDAWWDGRPFDAILLDVPCS 340


>gi|223041828|ref|ZP_03612018.1| Trk system potassium uptake protein TrkA [Actinobacillus minor 202]
 gi|223017397|gb|EEF15818.1| Trk system potassium uptake protein TrkA [Actinobacillus minor 202]
          Length = 432

 Score = 39.4 bits (91), Expect = 0.73,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 3/88 (3%)

Query: 30  ALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSL 87
            LL+   G++ILDA    GG +    +      VIALD +   ++  +E +    +Q ++
Sbjct: 240 ELLDAQNGELILDACAAPGGKTTHILEKAPQAKVIALDIEEARLARVKENLARLNQQATV 299

Query: 88  FQATFSQLQDYVPD-KGVDGVVFDLGVS 114
                SQ + ++ +    D ++ D   S
Sbjct: 300 ICGDASQPEQWLDNGVMFDRILLDAPCS 327


>gi|319424439|gb|ADV52513.1| sun protein [Shewanella putrefaciens 200]
          Length = 429

 Score = 39.4 bits (91), Expect = 0.73,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 36/86 (41%), Gaps = 2/86 (2%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88
           LL P   ++ILDA    GG S    ++    N++A+D D   +   Q+ +     +  L 
Sbjct: 235 LLAPQVNELILDACAAPGGKSCHLLELEPSINLVAVDFDAKRLERVQQNLDRLSLKAELI 294

Query: 89  QATFSQLQDYVPDKGVDGVVFDLGVS 114
            +  + +  +      D ++ D   S
Sbjct: 295 HSDAANIGSWWQGGLFDRILLDAPCS 320


>gi|118595122|ref|ZP_01552469.1| 23S rRNA (uracil-5-)-methyltransferase [Methylophilales bacterium
           HTCC2181]
 gi|118440900|gb|EAV47527.1| 23S rRNA (uracil-5-)-methyltransferase [Methylophilales bacterium
           HTCC2181]
          Length = 441

 Score = 39.4 bits (91), Expect = 0.73,   Method: Composition-based stats.
 Identities = 37/164 (22%), Positives = 61/164 (37%), Gaps = 30/164 (18%)

Query: 23  VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQ------- 75
           VL+ +V+  LNP P +VI D   G G ++      GSNV+  + D   V           
Sbjct: 277 VLIRRVMNFLNPKPTEVIFDFFCGLGNFTLPIASYGSNVVGFESDEALVESANINAEKNK 336

Query: 76  -ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLD 134
            + + ++K +  LF+               D  +  LG +S  +    R       G L+
Sbjct: 337 LQKLAEFK-RVDLFKVD-------------DQAITSLGRASKWLIDPPR------DGALN 376

Query: 135 MRMSCSGISASDVV--NQANVKDLTRILGILGEEKQASRIAHAI 176
           +  S S  +  +++     N   L R   +L  EK        I
Sbjct: 377 LINSISEENKPNLICYVSCNPATLARDAHVLTNEKGYKFAKAGI 420


>gi|86749595|ref|YP_486091.1| dimethyladenosine transferase [Rhodopseudomonas palustris HaA2]
 gi|119365054|sp|Q2IX80|RSMA_RHOP2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|86572623|gb|ABD07180.1| dimethyladenosine transferase [Rhodopseudomonas palustris HaA2]
          Length = 287

 Score = 39.4 bits (91), Expect = 0.74,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 6/61 (9%)

Query: 42  DATF-----GAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95
           D T      G GG +R+    G+  VIA++RD  A+   +E    Y  +  +  A   + 
Sbjct: 48  DVTVVEIGPGPGGLTRALLATGARRVIAIERDERALGALEEIAAHYPGRLEIVCADAMEF 107

Query: 96  Q 96
            
Sbjct: 108 D 108


>gi|238783195|ref|ZP_04627221.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
           bercovieri ATCC 43970]
 gi|238715991|gb|EEQ07977.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
           bercovieri ATCC 43970]
          Length = 431

 Score = 39.4 bits (91), Expect = 0.74,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 38/89 (42%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85
            + LL+P  G+ ILD     GG +    +     +V+A+D D   +S  +E ++  +   
Sbjct: 238 CVELLDPQNGEQILDLCAAPGGKTTHILEAAPKAHVLAVDIDEQRLSRVKENLQRLQLHA 297

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            +        + +  D+  D ++ D   S
Sbjct: 298 VVRVGDGRTPEAWCGDQQFDRILLDAPCS 326


>gi|144900150|emb|CAM77014.1| SAM-dependent methyltransferases [Magnetospirillum
          gryphiswaldense MSR-1]
          Length = 176

 Score = 39.4 bits (91), Expect = 0.75,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 18/42 (42%)

Query: 34 PAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQ 75
           APG  +LD   G G ++R     G  V ALDRD        
Sbjct: 21 IAPGGAVLDLASGGGRHARLLLDRGHAVTALDRDITQAHLAH 62


>gi|320040035|gb|EFW21969.1| RNA methylase [Coccidioides posadasii str. Silveira]
          Length = 240

 Score = 39.4 bits (91), Expect = 0.75,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 7/83 (8%)

Query: 33  NPAPGKVILDATF-GAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYK--EQFSL 87
            P    +++D TF G GG + +F +      V A+++DP ++ C +   + Y   ++ + 
Sbjct: 70  APQKKSIVID-TFAGVGGNAIAFARSNKWRRVYAIEKDPASLQCAKHNAKIYGVEDKITW 128

Query: 88  FQA-TFSQLQDYVPDKGVDGVVF 109
           FQ   F  L+  + D     V+F
Sbjct: 129 FQGDCFEILKTQLKDLAPYSVIF 151


>gi|288933811|ref|YP_003437870.1| RNA methyltransferase, TrmA family [Klebsiella variicola At-22]
 gi|288888540|gb|ADC56858.1| RNA methyltransferase, TrmA family [Klebsiella variicola At-22]
          Length = 434

 Score = 39.4 bits (91), Expect = 0.75,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 32/90 (35%), Gaps = 3/90 (3%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82
           ++   +  L+  P   +LD   G G ++       + V+ ++  P  V  G+E       
Sbjct: 274 MVRTALEWLDLQPEDRVLDLFCGMGNFTLPLATRAAQVVGVEGVPALVEKGRENAALNGL 333

Query: 83  EQFSLFQATFSQ--LQDYVPDKGVDGVVFD 110
              + F     +   +      G D V+ D
Sbjct: 334 SNVTFFHENLEEDVTRQAWAKHGFDKVLLD 363


>gi|303312089|ref|XP_003066056.1| trimethylguanosine synthase, putative [Coccidioides posadasii C735
           delta SOWgp]
 gi|240105718|gb|EER23911.1| trimethylguanosine synthase, putative [Coccidioides posadasii C735
           delta SOWgp]
          Length = 240

 Score = 39.4 bits (91), Expect = 0.75,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 7/83 (8%)

Query: 33  NPAPGKVILDATF-GAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYK--EQFSL 87
            P    +++D TF G GG + +F +      V A+++DP ++ C +   + Y   ++ + 
Sbjct: 70  APQKKSIVID-TFAGVGGNAIAFARSNKWRRVYAIEKDPASLQCAKHNAKIYGVEDKITW 128

Query: 88  FQA-TFSQLQDYVPDKGVDGVVF 109
           FQ   F  L+  + D     V+F
Sbjct: 129 FQGDCFEILKTQLKDLAPYSVIF 151


>gi|326437554|gb|EGD83124.1| Tgs1 protein [Salpingoeca sp. ATCC 50818]
          Length = 821

 Score = 39.4 bits (91), Expect = 0.76,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 3/75 (4%)

Query: 38  KVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQ- 94
           KV++D   G GG +  F +    VIA+D DP  ++  +   R Y   ++       F + 
Sbjct: 633 KVLVDGFCGVGGSAIQFARTCDRVIAIDIDPNKINYCRHNARIYGVEDKIEFITGDFFEV 692

Query: 95  LQDYVPDKGVDGVVF 109
           L        +D V  
Sbjct: 693 LPRLRARMEIDVVFL 707


>gi|296226495|ref|XP_002758952.1| PREDICTED: trimethylguanosine synthase [Callithrix jacchus]
          Length = 867

 Score = 39.4 bits (91), Expect = 0.76,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 2/68 (2%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96
           V++DA  G GG +  F   G  VIA+D DP  ++  +     Y   ++       F  L 
Sbjct: 695 VVVDAFCGVGGNTIQFALTGMRVIAVDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA 754

Query: 97  DYVPDKGV 104
             +    V
Sbjct: 755 PCLKADVV 762


>gi|168187189|ref|ZP_02621824.1| possible rRNA methylase [Clostridium botulinum C str. Eklund]
 gi|169294843|gb|EDS76976.1| possible rRNA methylase [Clostridium botulinum C str. Eklund]
          Length = 189

 Score = 39.4 bits (91), Expect = 0.76,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 41/101 (40%), Gaps = 9/101 (8%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRD 80
           L ++ IA+     G + +DAT G G  +    ++      V + D    A+   ++ + D
Sbjct: 12  LAKE-IAIKKLQEGDIAVDATMGNGNDTVFLARLVGESGKVYSFDVQSTAIENTKKRIID 70

Query: 81  --YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV--SSMQ 117
                +  L       +  Y+ +  +  V+F+LG   SS  
Sbjct: 71  NKINTKIELIHDGHENIDKYINE-KLKLVMFNLGYLPSSEH 110


>gi|328865307|gb|EGG13693.1| Putative PRIP-interacting protein [Dictyostelium fasciculatum]
          Length = 326

 Score = 39.4 bits (91), Expect = 0.77,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 3/73 (4%)

Query: 40  ILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQD 97
           I+D   GAGG S  F +   +V+A+D DP  V         Y+  E+       F  +  
Sbjct: 156 IIDGFGGAGGNSIQFARTCGHVLAVDLDPTKVQLAINNANVYRCVEKIDFINGNFMDVAR 215

Query: 98  YVP-DKGVDGVVF 109
            +     VD +  
Sbjct: 216 SIQGITHVDVIFL 228


>gi|83642941|ref|YP_431376.1| sun protein [Hahella chejuensis KCTC 2396]
 gi|83630984|gb|ABC26951.1| sun protein [Hahella chejuensis KCTC 2396]
          Length = 447

 Score = 39.4 bits (91), Expect = 0.77,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 2/86 (2%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88
           L++P P + +LDA    GG + +  +     +V A+D DP      ++T++  + +  + 
Sbjct: 245 LVDPQPNERVLDACCAPGGKTAALLERTPTISVTAVDVDPERQLRTRDTLQRLQLEADVR 304

Query: 89  QATFSQLQDYVPDKGVDGVVFDLGVS 114
            A    LQ +      D ++ D   S
Sbjct: 305 TADIGDLQQWWDGTPFDRILLDAPCS 330


>gi|323180215|gb|EFZ65767.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Escherichia coli 1180]
          Length = 160

 Score = 39.4 bits (91), Expect = 0.79,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 37/90 (41%), Gaps = 3/90 (3%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82
           ++ + +  L+  P   +LD   G G ++    K  ++V+ ++  P  V  GQ+  R    
Sbjct: 1   MVARALEWLDVQPEDRVLDLFCGMGNFTLPLAKQAASVVGVEGVPALVEKGQQNARLNGL 60

Query: 83  EQFSLFQATFSQ--LQDYVPDKGVDGVVFD 110
           +  + +     +   +      G D V+ D
Sbjct: 61  QNVTFYHENLEEDVTKQPWAKNGFDKVLLD 90


>gi|193215241|ref|YP_001996440.1| Fmu (Sun) domain-containing protein [Chloroherpeton thalassium ATCC
           35110]
 gi|193088718|gb|ACF13993.1| Fmu (Sun) domain protein [Chloroherpeton thalassium ATCC 35110]
          Length = 448

 Score = 39.4 bits (91), Expect = 0.79,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 5/85 (5%)

Query: 31  LLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSL 87
           LL+P P   +LDA  G GG   +  +  K    + A D +P      ++ ++   +Q   
Sbjct: 239 LLDPKPKDTVLDACAGGGGKTLHLAALMKNKGAIFAYDVNPKRFGNIRQRIKRSGQQNIR 298

Query: 88  FQATFSQLQDYVPDK--GVDGVVFD 110
              +  +L  +  D    +D ++ D
Sbjct: 299 LLDSPEKLAQFKNDWHEKIDCLLID 323


>gi|77408629|ref|ZP_00785363.1| conserved hypothetical protein [Streptococcus agalactiae COH1]
 gi|77172747|gb|EAO75882.1| conserved hypothetical protein [Streptococcus agalactiae COH1]
          Length = 188

 Score = 39.4 bits (91), Expect = 0.79,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 33/90 (36%), Gaps = 7/90 (7%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-E 83
           L +VI         + LDAT G G  +    K    V A D    A++  +  + +    
Sbjct: 13  LAEVID-----KEAITLDATMGNGNDTVFLAKSSKKVYAFDIQEEAIAKTKAKLTEQGIS 67

Query: 84  QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
              L       L+ YV    +   +F+LG 
Sbjct: 68  NAELILDGHENLEQYVHTP-LRAAIFNLGY 96


>gi|22537547|ref|NP_688398.1| hypothetical protein SAG1400 [Streptococcus agalactiae 2603V/R]
 gi|25011512|ref|NP_735907.1| hypothetical protein gbs1470 [Streptococcus agalactiae NEM316]
 gi|76787418|ref|YP_330041.1| hypothetical protein SAK_1433 [Streptococcus agalactiae A909]
 gi|76797669|ref|ZP_00779938.1| methyltransferase [Streptococcus agalactiae 18RS21]
 gi|77411510|ref|ZP_00787854.1| conserved hypothetical protein [Streptococcus agalactiae CJB111]
 gi|22534429|gb|AAN00271.1|AE014256_3 conserved hypothetical protein [Streptococcus agalactiae 2603V/R]
 gi|24413051|emb|CAD47129.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76562475|gb|ABA45059.1| conserved hypothetical protein [Streptococcus agalactiae A909]
 gi|76586963|gb|EAO63452.1| methyltransferase [Streptococcus agalactiae 18RS21]
 gi|77162436|gb|EAO73403.1| conserved hypothetical protein [Streptococcus agalactiae CJB111]
 gi|319745348|gb|EFV97662.1| rRNA methylase [Streptococcus agalactiae ATCC 13813]
          Length = 188

 Score = 39.4 bits (91), Expect = 0.79,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 33/90 (36%), Gaps = 7/90 (7%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-E 83
           L +VI         + LDAT G G  +    K    V A D    A++  +  + +    
Sbjct: 13  LAEVID-----KEAITLDATMGNGNDTVFLAKSSKKVYAFDIQEEAIAKTKAKLTEQGIS 67

Query: 84  QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
              L       L+ YV    +   +F+LG 
Sbjct: 68  NAELILDGHENLEQYVHTP-LRAAIFNLGY 96


>gi|325676133|ref|ZP_08155814.1| type 12 methyltransferase [Rhodococcus equi ATCC 33707]
 gi|325553043|gb|EGD22724.1| type 12 methyltransferase [Rhodococcus equi ATCC 33707]
          Length = 201

 Score = 39.4 bits (91), Expect = 0.80,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 36/102 (35%), Gaps = 7/102 (6%)

Query: 25  LEKVIALLNPAPGK---VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81
           L +++  +   PG+     LD   G G +S    K G +V A+D  P A+   +  +   
Sbjct: 28  LNRLLDAVAV-PGEAAARALDLGCGTGDHSIELAKRGWSVTAVDSVPLAIERARAKLPVA 86

Query: 82  KEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDR 123
                      + L  YV D        D+G     +    R
Sbjct: 87  GADVRFVLGDVTHLPAYVDDHYT--FALDVGC-FHGLTDEGR 125


>gi|159795650|pdb|2YXD|A Chain A, Crystal Structure Of Cobalamin Biosynthesis Precorrin 8w
           Decarboxylase (Cbit)
 gi|159795651|pdb|2YXD|B Chain B, Crystal Structure Of Cobalamin Biosynthesis Precorrin 8w
           Decarboxylase (Cbit)
          Length = 183

 Score = 39.4 bits (91), Expect = 0.81,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 35/85 (41%), Gaps = 5/85 (5%)

Query: 21  VPVLLEKV----IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQE 76
           VP+  E++    I  LN     V++D   G+GG +    K    V A+D    A+   ++
Sbjct: 16  VPITKEEIRAVSIGKLNLNKDDVVVDVGCGSGGXTVEIAKRCKFVYAIDYLDGAIEVTKQ 75

Query: 77  TMRDYK-EQFSLFQATFSQLQDYVP 100
            +  +  +   + +     + D + 
Sbjct: 76  NLAKFNIKNCQIIKGRAEDVLDKLE 100


>gi|57867203|ref|YP_188893.1| hypothetical protein SERP1321 [Staphylococcus epidermidis RP62A]
 gi|293366298|ref|ZP_06612978.1| rRNA methyltransferase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|57637861|gb|AAW54649.1| conserved hypothetical protein [Staphylococcus epidermidis RP62A]
 gi|291319536|gb|EFE59902.1| rRNA methyltransferase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|329737492|gb|EGG73745.1| putative rRNA methylase [Staphylococcus epidermidis VCU045]
          Length = 187

 Score = 39.4 bits (91), Expect = 0.81,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 6/85 (7%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91
                +++DAT G G  +  F +   N  V   D    A+    +  +DY     L Q+ 
Sbjct: 18  INHNSIVIDATSGNGNDTAYFAQHVPNGLVYGFDIQEQAILNTHKKTKDY-SNVKLIQSG 76

Query: 92  FSQLQDYVPDKG---VDGVVFDLGV 113
               + ++P +    +D  +F+LG 
Sbjct: 77  HENAKLHIPAQHHGCIDAAIFNLGY 101


>gi|307543963|ref|YP_003896442.1| Sun protein [Halomonas elongata DSM 2581]
 gi|307215987|emb|CBV41257.1| K03500 Sun protein [Halomonas elongata DSM 2581]
          Length = 447

 Score = 39.4 bits (91), Expect = 0.81,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 36/100 (36%), Gaps = 17/100 (17%)

Query: 23  VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82
           VLL  VI    P PG  +LDA    GG +    ++       D D  A+      +   +
Sbjct: 249 VLLGPVI---APRPGARVLDACCAPGGKAAHLLEL------FDIDLQAIDSDDARLARVE 299

Query: 83  EQF-------SLFQATFSQLQDYVPDKGVDGVVFDLGVSS 115
           +         SL     ++ +D+      D ++ D   S 
Sbjct: 300 DTLARLGLSASLAHGDATE-RDWWDGTAFDAILLDAPCSG 338


>gi|156975785|ref|YP_001446692.1| 23S rRNA 5-methyluridine methyltransferase [Vibrio harveyi ATCC
           BAA-1116]
 gi|226725399|sp|A7MTS9|RUMA_VIBHB RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|156527379|gb|ABU72465.1| hypothetical protein VIBHAR_03529 [Vibrio harveyi ATCC BAA-1116]
          Length = 439

 Score = 39.4 bits (91), Expect = 0.81,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 3/90 (3%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR-DYK 82
           ++ + +  L+P   + +LD   G G +S    K   +V+ ++     V         +  
Sbjct: 281 MVAQAVDWLDPKSDERVLDLFCGLGNFSLPIAKRAKHVVGVEGVAEMVEKAVNNASLNQI 340

Query: 83  EQFSLFQATFSQLQD--YVPDKGVDGVVFD 110
                + A   Q  +      +  D V+ D
Sbjct: 341 NNARFYHANLEQDFEGQVWAAEQFDKVLLD 370


>gi|149010726|ref|ZP_01832097.1| rRNA methylase, putative [Streptococcus pneumoniae SP19-BS75]
 gi|147765207|gb|EDK72136.1| rRNA methylase, putative [Streptococcus pneumoniae SP19-BS75]
          Length = 185

 Score = 39.4 bits (91), Expect = 0.82,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 10/91 (10%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82
           L +V+         V++DAT G  G+ +    K+   V A D    A+   QE +     
Sbjct: 12  LAEVV----TKED-VVVDATMGN-GHDTLFLAKLAKQVYAFDIQKQALEKTQERLHQAGL 65

Query: 83  EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
               L       L  +V      G+ F+LG 
Sbjct: 66  TNAQLILQGHETLDQFVTKAKA-GI-FNLGY 94


>gi|125974460|ref|YP_001038370.1| methyltransferase type 11 [Clostridium thermocellum ATCC 27405]
 gi|256005184|ref|ZP_05430152.1| Methyltransferase type 11 [Clostridium thermocellum DSM 2360]
 gi|281418987|ref|ZP_06250005.1| Methyltransferase type 11 [Clostridium thermocellum JW20]
 gi|125714685|gb|ABN53177.1| Methyltransferase type 11 [Clostridium thermocellum ATCC 27405]
 gi|255990838|gb|EEU00952.1| Methyltransferase type 11 [Clostridium thermocellum DSM 2360]
 gi|281407444|gb|EFB37704.1| Methyltransferase type 11 [Clostridium thermocellum JW20]
 gi|316941597|gb|ADU75631.1| Methyltransferase type 11 [Clostridium thermocellum DSM 1313]
          Length = 244

 Score = 39.4 bits (91), Expect = 0.83,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 31/73 (42%)

Query: 29  IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLF 88
           I      PG  ILD   G+GGYS    K G  V A+D +   V   ++   +     + F
Sbjct: 25  IKNCAGKPGGKILDVACGSGGYSVELAKEGYLVTAVDIEEEMVEKVKKKASENGLSINAF 84

Query: 89  QATFSQLQDYVPD 101
           +    +L+  + +
Sbjct: 85  KCDMRELEKKIGE 97


>gi|328717362|ref|XP_003246183.1| PREDICTED: hypothetical protein LOC100573105 [Acyrthosiphon pisum]
          Length = 592

 Score = 39.4 bits (91), Expect = 0.83,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 37/98 (37%), Gaps = 17/98 (17%)

Query: 46  GAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKG 103
           GAGG      +    VIA+D D   +   ++    Y   ++       + +L++      
Sbjct: 227 GAGGNVIHLARRFDKVIAVDIDADKIIMAKQNAAIYGVGDKIEFIVGDYFKLENQ----- 281

Query: 104 VDGVVFDLGVSSMQIDCGDRGFSFQK---SGPLDMRMS 138
              +  D+ V+S      +    + K    GPLD+ M 
Sbjct: 282 ---IKGDVIVTSPPWGGPE----YSKMDVIGPLDLYMD 312


>gi|296164985|ref|ZP_06847540.1| type 11 methyltransferase [Mycobacterium parascrofulaceum ATCC
          BAA-614]
 gi|295899633|gb|EFG79084.1| type 11 methyltransferase [Mycobacterium parascrofulaceum ATCC
          BAA-614]
          Length = 252

 Score = 39.4 bits (91), Expect = 0.84,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 24/54 (44%)

Query: 30 ALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83
            L   P   ++D   GAG ++    + G++V+A DRD   +      +R   +
Sbjct: 7  DRLGIGPATKVIDVGCGAGRHAFEAYRRGADVVAFDRDADELRAVDTILRAMAD 60


>gi|281207717|gb|EFA81897.1| Putative PRIP-interacting protein [Polysphondylium pallidum PN500]
          Length = 356

 Score = 39.4 bits (91), Expect = 0.84,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 3/73 (4%)

Query: 40  ILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQD 97
           ILDA  GAGG +  F K   +V+++D D   +       + Y+  ++  L  + F    +
Sbjct: 192 ILDAFCGAGGNTIQFAKQCDHVLSVDIDKKKLMMASHNAKIYQCLDRIDLVHSDFMYFAN 251

Query: 98  YVP-DKGVDGVVF 109
            +   + VD V  
Sbjct: 252 SIQGIQHVDAVFL 264


>gi|319785852|ref|YP_004145327.1| sun protein [Pseudoxanthomonas suwonensis 11-1]
 gi|317464364|gb|ADV26096.1| sun protein [Pseudoxanthomonas suwonensis 11-1]
          Length = 451

 Score = 39.4 bits (91), Expect = 0.85,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 38/94 (40%), Gaps = 5/94 (5%)

Query: 26  EKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRD--- 80
           ++    L P PG  +LDA    GG +    +      ++ALD DP  ++  ++T+R    
Sbjct: 250 QQAADALAPEPGARVLDACAAPGGKAAHLIERDPTLELLALDVDPRRLARVEDTLRRGGL 309

Query: 81  YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
             E+  L     +    +      D ++ D   S
Sbjct: 310 LGERVQLRPVDATAPALWWDGFTFDAILLDAPCS 343


>gi|115378941|ref|ZP_01466075.1| methyltransferase [Stigmatella aurantiaca DW4/3-1]
 gi|310821512|ref|YP_003953870.1| methyltransferase type 11 domain-containing protein [Stigmatella
           aurantiaca DW4/3-1]
 gi|115364058|gb|EAU63159.1| methyltransferase [Stigmatella aurantiaca DW4/3-1]
 gi|309394584|gb|ADO72043.1| Methyltransferase type 11 domain protein [Stigmatella aurantiaca
           DW4/3-1]
          Length = 247

 Score = 39.4 bits (91), Expect = 0.86,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 28/72 (38%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84
           +E+ + LL   PG  +LD   G G ++      G  V  LD     ++  ++     +  
Sbjct: 29  VEQCLRLLALPPGSKVLDLCCGQGRHAVELALRGYQVTGLDISSERLALARQRATQAQVN 88

Query: 85  FSLFQATFSQLQ 96
               QA   Q+ 
Sbjct: 89  VEWVQADMRQMP 100


>gi|72162072|ref|YP_289729.1| s-adenosylmethionine (SAM)-dependent methyltransferase
          [Thermobifida fusca YX]
 gi|71915804|gb|AAZ55706.1| s-adenosylmethionine (SAM)-dependent methyltransferase
          [Thermobifida fusca YX]
          Length = 251

 Score = 39.4 bits (91), Expect = 0.86,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 4/68 (5%)

Query: 11 SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFA 70
           A H  +  H   LL     LLN APG+ +LDA  G G +       G +V+ +D  P  
Sbjct: 12 DARHSFVAAHGTALL----DLLNAAPGERVLDAGCGTGDHVAQLAAAGVDVLGVDISPEM 67

Query: 71 VSCGQETM 78
          V+      
Sbjct: 68 VARAAARF 75


>gi|327535927|gb|AEA94761.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus faecalis
           OG1RF]
          Length = 456

 Score = 39.4 bits (91), Expect = 0.86,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 32/98 (32%), Gaps = 17/98 (17%)

Query: 23  VLLEKVIALLNPAPGKVILD-----ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77
           VL  + I  L+  P + ++D      T G      S  K    V  +D  P A+   +  
Sbjct: 297 VLYNEGIKALDLQPNETVVDAYCGVGTIG-----LSLAKQAHQVRGMDTIPAAIDDARFN 351

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFD 110
            +      +         +D +P         D +V D
Sbjct: 352 AKRLG--VTNTHYAVGTAEDLLPKWFKEGFKPDAIVVD 387


>gi|319946473|ref|ZP_08020710.1| rRNA methylase [Streptococcus australis ATCC 700641]
 gi|319747441|gb|EFV99697.1| rRNA methylase [Streptococcus australis ATCC 700641]
          Length = 185

 Score = 39.4 bits (91), Expect = 0.86,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 10/91 (10%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82
           L +V           ++DAT G  G+ +    K+   V A D    A+   Q+ + +   
Sbjct: 12  LREV-----ITDQDTVVDATMGN-GHDTLFLAKLAKEVYAFDIQEQALVHTQKRLEEAGL 65

Query: 83  EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
               L      +   YV    V   +F+LG 
Sbjct: 66  SNARLLLKGHEEADHYVNQ--VKAAIFNLGY 94


>gi|315174955|gb|EFU18972.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX1346]
          Length = 456

 Score = 39.4 bits (91), Expect = 0.86,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 32/98 (32%), Gaps = 17/98 (17%)

Query: 23  VLLEKVIALLNPAPGKVILD-----ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77
           VL  + I  L+  P + ++D      T G      S  K    V  +D  P A+   +  
Sbjct: 297 VLYNEGIKALDLQPNETVVDAYCGVGTIG-----LSLAKQAHQVRGMDTIPAAIDDARFN 351

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFD 110
            +      +         +D +P         D +V D
Sbjct: 352 AKRLG--VTNTHYAVGTAEDLLPKWFKEGFKPDAIVVD 387


>gi|315162126|gb|EFU06143.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0645]
 gi|315168692|gb|EFU12709.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX1341]
          Length = 456

 Score = 39.4 bits (91), Expect = 0.86,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 32/98 (32%), Gaps = 17/98 (17%)

Query: 23  VLLEKVIALLNPAPGKVILD-----ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77
           VL  + I  L+  P + ++D      T G      S  K    V  +D  P A+   +  
Sbjct: 297 VLYNEGIKALDLQPNETVVDAYCGVGTIG-----LSLAKQAHQVRGMDTIPAAIDDARFN 351

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFD 110
            +      +         +D +P         D +V D
Sbjct: 352 AKRLG--VTNTHYAVGTAEDLLPKWFKEGFKPDAIVVD 387


>gi|312900072|ref|ZP_07759389.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0470]
 gi|311292829|gb|EFQ71385.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0470]
          Length = 456

 Score = 39.4 bits (91), Expect = 0.86,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 32/98 (32%), Gaps = 17/98 (17%)

Query: 23  VLLEKVIALLNPAPGKVILD-----ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77
           VL  + I  L+  P + ++D      T G      S  K    V  +D  P A+   +  
Sbjct: 297 VLYNEGIKALDLQPNETVVDAYCGVGTIG-----LSLAKQAHQVRGMDTIPAAIDDARFN 351

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFD 110
            +      +         +D +P         D +V D
Sbjct: 352 AKRLG--VTNTHYAVGTAEDLLPKWFKEGFKPDAIVVD 387


>gi|307276947|ref|ZP_07558057.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX2134]
 gi|306506370|gb|EFM75530.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX2134]
          Length = 456

 Score = 39.4 bits (91), Expect = 0.86,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 32/98 (32%), Gaps = 17/98 (17%)

Query: 23  VLLEKVIALLNPAPGKVILD-----ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77
           VL  + I  L+  P + ++D      T G      S  K    V  +D  P A+   +  
Sbjct: 297 VLYNEGIKALDLQPNETVVDAYCGVGTIG-----LSLAKQAHQVRGMDTIPAAIDDARFN 351

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFD 110
            +      +         +D +P         D +V D
Sbjct: 352 AKRLG--VTNTHYAVGTAEDLLPKWFKEGFKPDAIVVD 387


>gi|257416880|ref|ZP_05593874.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis
           AR01/DG]
 gi|257158708|gb|EEU88668.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis
           ARO1/DG]
          Length = 456

 Score = 39.4 bits (91), Expect = 0.86,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 32/98 (32%), Gaps = 17/98 (17%)

Query: 23  VLLEKVIALLNPAPGKVILD-----ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77
           VL  + I  L+  P + ++D      T G      S  K    V  +D  P A+   +  
Sbjct: 297 VLYNEGIKALDLQPNETVVDAYCGVGTIG-----LSLAKQAHQVRGMDTIPAAIDDARFN 351

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFD 110
            +      +         +D +P         D +V D
Sbjct: 352 AKRLG--VTNTHYAVGTAEDLLPKWFKEGFKPDAIVVD 387


>gi|257087679|ref|ZP_05582040.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis D6]
 gi|256995709|gb|EEU83011.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis D6]
 gi|315025522|gb|EFT37454.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX2137]
          Length = 456

 Score = 39.4 bits (91), Expect = 0.86,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 32/98 (32%), Gaps = 17/98 (17%)

Query: 23  VLLEKVIALLNPAPGKVILD-----ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77
           VL  + I  L+  P + ++D      T G      S  K    V  +D  P A+   +  
Sbjct: 297 VLYNEGIKALDLQPNETVVDAYCGVGTIG-----LSLAKQAHQVRGMDTIPAAIDDARFN 351

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFD 110
            +      +         +D +P         D +V D
Sbjct: 352 AKRLG--VTNTHYAVGTAEDLLPKWFKEGFKPDAIVVD 387


>gi|256763335|ref|ZP_05503915.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis T3]
 gi|256963815|ref|ZP_05567986.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis
           HIP11704]
 gi|307271762|ref|ZP_07553033.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0855]
 gi|256684586|gb|EEU24281.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis T3]
 gi|256954311|gb|EEU70943.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis
           HIP11704]
 gi|306511640|gb|EFM80639.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0855]
          Length = 456

 Score = 39.4 bits (91), Expect = 0.86,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 32/98 (32%), Gaps = 17/98 (17%)

Query: 23  VLLEKVIALLNPAPGKVILD-----ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77
           VL  + I  L+  P + ++D      T G      S  K    V  +D  P A+   +  
Sbjct: 297 VLYNEGIKALDLQPNETVVDAYCGVGTIG-----LSLAKQAHQVRGMDTIPAAIDDARFN 351

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFD 110
            +      +         +D +P         D +V D
Sbjct: 352 AKRLG--VTNTHYAVGTAEDLLPKWFKEGFKPDAIVVD 387


>gi|255974885|ref|ZP_05425471.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis T2]
 gi|256616789|ref|ZP_05473635.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis ATCC
           4200]
 gi|256854009|ref|ZP_05559374.1| RNA methyltransferase [Enterococcus faecalis T8]
 gi|256961043|ref|ZP_05565214.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis
           Merz96]
 gi|257081727|ref|ZP_05576088.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis E1Sol]
 gi|293384567|ref|ZP_06630433.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           R712]
 gi|293386796|ref|ZP_06631367.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           S613]
 gi|307278742|ref|ZP_07559809.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0860]
 gi|307290285|ref|ZP_07570201.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0411]
 gi|312906393|ref|ZP_07765401.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           DAPTO 512]
 gi|312979448|ref|ZP_07791136.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           DAPTO 516]
 gi|255967757|gb|EET98379.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis T2]
 gi|256596316|gb|EEU15492.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis ATCC
           4200]
 gi|256710952|gb|EEU25995.1| RNA methyltransferase [Enterococcus faecalis T8]
 gi|256951539|gb|EEU68171.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis
           Merz96]
 gi|256989757|gb|EEU77059.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis E1Sol]
 gi|291078113|gb|EFE15477.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           R712]
 gi|291083799|gb|EFE20762.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           S613]
 gi|306498706|gb|EFM68207.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0411]
 gi|306504603|gb|EFM73806.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0860]
 gi|310627547|gb|EFQ10830.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           DAPTO 512]
 gi|311287819|gb|EFQ66375.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           DAPTO 516]
 gi|315030469|gb|EFT42401.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX4000]
 gi|315032560|gb|EFT44492.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0017]
 gi|315170491|gb|EFU14508.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX1342]
          Length = 456

 Score = 39.4 bits (91), Expect = 0.86,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 32/98 (32%), Gaps = 17/98 (17%)

Query: 23  VLLEKVIALLNPAPGKVILD-----ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77
           VL  + I  L+  P + ++D      T G      S  K    V  +D  P A+   +  
Sbjct: 297 VLYNEGIKALDLQPNETVVDAYCGVGTIG-----LSLAKQAHQVRGMDTIPAAIDDARFN 351

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFD 110
            +      +         +D +P         D +V D
Sbjct: 352 AKRLG--VTNTHYAVGTAEDLLPKWFKEGFKPDAIVVD 387


>gi|229549174|ref|ZP_04437899.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis ATCC
           29200]
 gi|255971891|ref|ZP_05422477.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis T1]
 gi|256957937|ref|ZP_05562108.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis DS5]
 gi|257079874|ref|ZP_05574235.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis JH1]
 gi|257421676|ref|ZP_05598666.1| RNA methyltransferase [Enterococcus faecalis X98]
 gi|294780400|ref|ZP_06745766.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           PC1.1]
 gi|300860697|ref|ZP_07106784.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TUSoD Ef11]
 gi|307269643|ref|ZP_07550978.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX4248]
 gi|312953733|ref|ZP_07772567.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0102]
 gi|229305411|gb|EEN71407.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis ATCC
           29200]
 gi|255962909|gb|EET95385.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis T1]
 gi|256948433|gb|EEU65065.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis DS5]
 gi|256987904|gb|EEU75206.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis JH1]
 gi|257163500|gb|EEU93460.1| RNA methyltransferase [Enterococcus faecalis X98]
 gi|294452500|gb|EFG20936.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           PC1.1]
 gi|300849736|gb|EFK77486.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TUSoD Ef11]
 gi|306514033|gb|EFM82620.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX4248]
 gi|310628360|gb|EFQ11643.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0102]
 gi|315035082|gb|EFT47014.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0027]
 gi|315148672|gb|EFT92688.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX4244]
 gi|315151812|gb|EFT95828.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0031]
 gi|315155574|gb|EFT99590.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0043]
 gi|315159336|gb|EFU03353.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0312]
 gi|323481633|gb|ADX81072.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           62]
 gi|329570604|gb|EGG52323.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX1467]
          Length = 456

 Score = 39.4 bits (91), Expect = 0.86,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 32/98 (32%), Gaps = 17/98 (17%)

Query: 23  VLLEKVIALLNPAPGKVILD-----ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77
           VL  + I  L+  P + ++D      T G      S  K    V  +D  P A+   +  
Sbjct: 297 VLYNEGIKALDLQPNETVVDAYCGVGTIG-----LSLAKQAHQVRGMDTIPAAIDDARFN 351

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFD 110
            +      +         +D +P         D +V D
Sbjct: 352 AKRLG--VTNTHYAVGTAEDLLPKWFKEGFKPDAIVVD 387


>gi|29377186|ref|NP_816340.1| RNA methyltransferase [Enterococcus faecalis V583]
 gi|227554196|ref|ZP_03984243.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis HH22]
 gi|257090896|ref|ZP_05585257.1| tRNA (uracil-5-)-methyltransferase trmA [Enterococcus faecalis
           CH188]
 gi|257420102|ref|ZP_05597096.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis T11]
 gi|312902534|ref|ZP_07761740.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0635]
 gi|50401756|sp|Q830R6|Y2706_ENTFA RecName: Full=Uncharacterized RNA methyltransferase EF_2706
 gi|29344652|gb|AAO82410.1| RNA methyltransferase, TrmA family [Enterococcus faecalis V583]
 gi|227176695|gb|EEI57667.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis HH22]
 gi|256999708|gb|EEU86228.1| tRNA (uracil-5-)-methyltransferase trmA [Enterococcus faecalis
           CH188]
 gi|257161930|gb|EEU91890.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis T11]
 gi|310634204|gb|EFQ17487.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0635]
 gi|315573827|gb|EFU86018.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0309B]
 gi|315580263|gb|EFU92454.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0309A]
          Length = 456

 Score = 39.4 bits (91), Expect = 0.86,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 32/98 (32%), Gaps = 17/98 (17%)

Query: 23  VLLEKVIALLNPAPGKVILD-----ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77
           VL  + I  L+  P + ++D      T G      S  K    V  +D  P A+   +  
Sbjct: 297 VLYNEGIKALDLQPNETVVDAYCGVGTIG-----LSLAKQAHQVRGMDTIPAAIDDARFN 351

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFD 110
            +      +         +D +P         D +V D
Sbjct: 352 AKRLG--VTNTHYAVGTAEDLLPKWFKEGFKPDAIVVD 387


>gi|291301756|ref|YP_003513034.1| methyltransferase type 11 [Stackebrandtia nassauensis DSM 44728]
 gi|290570976|gb|ADD43941.1| Methyltransferase type 11 [Stackebrandtia nassauensis DSM 44728]
          Length = 305

 Score = 39.4 bits (91), Expect = 0.87,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 9/87 (10%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84
           + +++  L P    V LDA  G G ++      G  VI +D     ++  +E +     +
Sbjct: 85  MRELLDALEP---GVALDAACGTGRHAAYLAGRGHQVIGVDSSAEMLAVAREKL----PE 137

Query: 85  FSLFQATFSQLQDYVPDKGVDGVVFDL 111
               QA    L   VPD  VD +V  L
Sbjct: 138 VEFHQAGLDALP--VPDSHVDVIVCAL 162


>gi|238754203|ref|ZP_04615561.1| Ribosomal RNA small subunit methyltransferase B [Yersinia ruckeri
           ATCC 29473]
 gi|238707699|gb|EEQ00059.1| Ribosomal RNA small subunit methyltransferase B [Yersinia ruckeri
           ATCC 29473]
          Length = 429

 Score = 39.4 bits (91), Expect = 0.88,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 38/89 (42%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85
            + LL+P  G+ ILD     GG +    +     +V+A+D D   +S  +E ++  +   
Sbjct: 238 CVDLLDPQNGEQILDLCAAPGGKTTHILEAAPKSHVLAVDIDEQRLSRVKENLQRLQLHA 297

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
           ++          +  ++  D ++ D   S
Sbjct: 298 TVTVGDGRAPDKWCGNQLFDRILLDAPCS 326


>gi|284161369|ref|YP_003399992.1| RNA methylase, NOL1/NOP2/sun family [Archaeoglobus profundus DSM
           5631]
 gi|284011366|gb|ADB57319.1| RNA methylase, NOL1/NOP2/sun family [Archaeoglobus profundus DSM
           5631]
          Length = 445

 Score = 39.4 bits (91), Expect = 0.89,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 34/84 (40%), Gaps = 4/84 (4%)

Query: 31  LLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQFS 86
           LL+P P + ++D     GG   +     +    + A D D   +   +E ++    +   
Sbjct: 249 LLDPKPNETVVDLCAAPGGKTIHMAELMRNRGVIHAFDVDELRLKRMEELIKRCGVKIVK 308

Query: 87  LFQATFSQLQDYVPDKGVDGVVFD 110
           +++    +  D + +   D V+ D
Sbjct: 309 IYKMDARKAVDVLGESIADKVMLD 332


>gi|254447150|ref|ZP_05060617.1| 23S rRNA (uracil-5-)-methyltransferase [gamma proteobacterium
           HTCC5015]
 gi|198263289|gb|EDY87567.1| 23S rRNA (uracil-5-)-methyltransferase [gamma proteobacterium
           HTCC5015]
          Length = 452

 Score = 39.4 bits (91), Expect = 0.89,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 53/155 (34%), Gaps = 26/155 (16%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83
           ++   +  L+  PG  +LDA  G G +S +    G+ V+ L+     V   +   RD   
Sbjct: 294 MVRTAVEQLHVPPGAHVLDAFCGVGNFSLALANGGAKVLGLEGSDNMVEKARHNARDNGF 353

Query: 84  QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGIS 143
           +   F+       D +    +DG+                             +      
Sbjct: 354 ELCEFKTMNLMHSDGIGRHTLDGI--------HHA-----------------LLDPPRDG 388

Query: 144 ASDVVNQ-ANVKDLTRILGILGEEKQASRIAHAIV 177
           AS++  + A   +L R+L I       SR A  +V
Sbjct: 389 ASELCQRLAREPELQRVLYISCNPATFSRDAEHLV 423


>gi|209920234|ref|YP_002294318.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli SE11]
 gi|209913493|dbj|BAG78567.1| putative RNA methyltransferase [Escherichia coli SE11]
          Length = 433

 Score = 39.4 bits (91), Expect = 0.91,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 37/90 (41%), Gaps = 3/90 (3%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82
           ++ + +  L+  P   +LD   G G ++    K  ++V+ ++  P  V  GQ+  R    
Sbjct: 274 MVARALEWLDVQPEDRVLDLFCGMGNFTLPLAKQAASVVGVEGVPALVEKGQQNARLNGL 333

Query: 83  EQFSLFQATFSQ--LQDYVPDKGVDGVVFD 110
           +  + +     +   +      G D V+ D
Sbjct: 334 QNVTFYHENLEEDVTKQPWAKNGFDKVLLD 363


>gi|111021629|ref|YP_704601.1| methyltransferase [Rhodococcus jostii RHA1]
 gi|110821159|gb|ABG96443.1| possible methyltransferase [Rhodococcus jostii RHA1]
          Length = 246

 Score = 39.4 bits (91), Expect = 0.91,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)

Query: 30 ALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDR--DPFA 70
            L   PG  ++D   GAG +S    + G++VIA D+  D  A
Sbjct: 7  DRLGVKPGDKVIDIGAGAGRHSFELYRRGADVIAFDQNADELA 49


>gi|326202114|ref|ZP_08191984.1| rRNA methylase [Clostridium papyrosolvens DSM 2782]
 gi|325987909|gb|EGD48735.1| rRNA methylase [Clostridium papyrosolvens DSM 2782]
          Length = 188

 Score = 39.4 bits (91), Expect = 0.91,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 36/94 (38%), Gaps = 9/94 (9%)

Query: 26  EKVIALLNPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDY 81
            ++++ +    G  ++DAT G  G+   F       G  V + D    A++  +  +   
Sbjct: 12  HEIVSRVVCN-GDTVVDATAGN-GHDTVFLARLVGTGGQVYSFDIQESALNTTKNRLESE 69

Query: 82  K--EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
               + +L       +  +V    +   +F+LG 
Sbjct: 70  NLLSRVNLIHDGHQNMMKHVNKP-IKAAMFNLGY 102


>gi|226364165|ref|YP_002781947.1| hypothetical protein ROP_47550 [Rhodococcus opacus B4]
 gi|226242654|dbj|BAH53002.1| hypothetical protein [Rhodococcus opacus B4]
          Length = 246

 Score = 39.4 bits (91), Expect = 0.91,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)

Query: 30 ALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDR--DPFA 70
            L   PG  ++D   GAG +S    + G++VIA D+  D  A
Sbjct: 7  DRLGVKPGDKVIDIGAGAGRHSFELYRRGADVIAFDQNADELA 49


>gi|148826743|ref|YP_001291496.1| potassium transporter peripheral membrane component [Haemophilus
           influenzae PittEE]
 gi|148716903|gb|ABQ99113.1| potassium transporter peripheral membrane component [Haemophilus
           influenzae PittEE]
          Length = 451

 Score = 39.4 bits (91), Expect = 0.91,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 2/82 (2%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88
           LL P   + ILDA    GG +    ++    NVIALD +   +   +E +    +Q  + 
Sbjct: 253 LLEPKNEEWILDACAAPGGKTTHILELAPQSNVIALDVETHRLKRVEENLARLNQQAIVV 312

Query: 89  QATFSQLQDYVPDKGVDGVVFD 110
               S+  +++ +     V FD
Sbjct: 313 CGDASKPDEWLAEISKSAVKFD 334


>gi|92117868|ref|YP_577597.1| dimethyladenosine transferase [Nitrobacter hamburgensis X14]
 gi|119365039|sp|Q1QKW0|RSMA_NITHX RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|91800762|gb|ABE63137.1| dimethyladenosine transferase [Nitrobacter hamburgensis X14]
          Length = 287

 Score = 39.4 bits (91), Expect = 0.91,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 6/61 (9%)

Query: 42  DATF-----GAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95
           DAT      G GG +R+   MG+  VIA++RD  A+   +E    Y  + ++  A  +Q 
Sbjct: 48  DATVIEIGPGPGGLTRALLAMGAQRVIAIERDARALGALEEISGRYPGRLTIVNADATQF 107

Query: 96  Q 96
            
Sbjct: 108 D 108


>gi|89895091|ref|YP_518578.1| hypothetical protein DSY2345 [Desulfitobacterium hafniense Y51]
 gi|219669504|ref|YP_002459939.1| rRNA methylase [Desulfitobacterium hafniense DCB-2]
 gi|89334539|dbj|BAE84134.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219539764|gb|ACL21503.1| putative rRNA methylase [Desulfitobacterium hafniense DCB-2]
          Length = 193

 Score = 39.4 bits (91), Expect = 0.91,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 6/86 (6%)

Query: 33  NPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMRD--YKEQFSL 87
           +  PG + LD T G G  +    +       V A D    A+   Q  +++    E+  L
Sbjct: 19  SIQPGDIALDLTAGRGRDTLFLAQLVGAEGRVHAFDVQEVALQETQRLLKEQQMAERVHL 78

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGV 113
           +     +L + V D  V   +F+LG 
Sbjct: 79  YHWDHGRLLEKVQDP-VQAAMFNLGY 103


>gi|311105085|ref|YP_003977938.1| gluconate 5-dehydrogenase 2 [Achromobacter xylosoxidans A8]
 gi|310759774|gb|ADP15223.1| gluconate 5-dehydrogenase 2 [Achromobacter xylosoxidans A8]
          Length = 259

 Score = 39.0 bits (90), Expect = 0.94,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 32/96 (33%), Gaps = 22/96 (22%)

Query: 40  ILDATFGAGGY---------------SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84
            LD TFG  G                +R+  + G+ V+  D    A +   E +      
Sbjct: 5   YLDRTFGLAGRVALVTGAARGLGYAIARALGQAGAQVVINDLSGDACAAACERLAAEG-- 62

Query: 85  FSLFQATFS-----QLQDYVPDKGVDGVVFDLGVSS 115
                A F       + D V    + G+  D+ VSS
Sbjct: 63  IKAHGAPFDVADEKAVADAVAQLEIAGLAIDVLVSS 98


>gi|308471212|ref|XP_003097837.1| hypothetical protein CRE_12932 [Caenorhabditis remanei]
 gi|308239142|gb|EFO83094.1| hypothetical protein CRE_12932 [Caenorhabditis remanei]
          Length = 362

 Score = 39.0 bits (90), Expect = 0.94,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 11/109 (10%)

Query: 9   MSSAIH--HTIGDHVPVLLEKVIALLNPAPGKV-ILDATFGAGGYSRSFCKMGS--NVIA 63
           MS A+H  H I D +P +   ++  L    G V +LD   G G +S    +     + + 
Sbjct: 143 MSQALHEKHVIPDMIPAIGNGIVEKLE--SGGVRVLDVGCGGGFHSSLLAEQYPKAHFVG 200

Query: 64  LDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKGVDGVVF 109
           LD    A++  ++               +    ++ +   D   D V+ 
Sbjct: 201 LDIGADAINQAKKRKTKSGGIFNNLEFIECDAGKMPEIWTD-SFDLVLI 248


>gi|14590913|ref|NP_142986.1| fmu protein [Pyrococcus horikoshii OT3]
 gi|3257494|dbj|BAA30177.1| 450aa long hypothetical fmu protein [Pyrococcus horikoshii OT3]
          Length = 450

 Score = 39.0 bits (90), Expect = 0.95,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 15/96 (15%)

Query: 28  VIALLNPAPGKVILDA-------TFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRD 80
           V  +LNP PG+ +LD        TF    ++ +  +    ++A+D     +   +E M+ 
Sbjct: 253 VAHVLNPEPGERVLDLAAAPGSKTF----HAAALMENRGEIVAVDYSYDRLIKMRERMKK 308

Query: 81  YK-EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSS 115
              +   L     +  Q Y   +  D ++ D   SS
Sbjct: 309 LGVKNVKLVH---ADGQSYTEKEKFDKIILDAPCSS 341


>gi|332654338|ref|ZP_08420082.1| methyltransferase domain protein [Ruminococcaceae bacterium D16]
 gi|332517424|gb|EGJ47029.1| methyltransferase domain protein [Ruminococcaceae bacterium D16]
          Length = 359

 Score = 39.0 bits (90), Expect = 0.95,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 29/68 (42%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H  V+  KV  LLNP P   ILD   G G YS    +   +V+A D     V   ++  +
Sbjct: 159 HREVVRPKVTELLNPDPTDYILDIACGNGNYSAYLAEKAVSVLAFDYSEKMVELAKKRQK 218

Query: 80  DYKEQFSL 87
            Y +    
Sbjct: 219 RYADHIEF 226


>gi|297625401|ref|YP_003687164.1| methyltransferase [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
 gi|296921166|emb|CBL55713.1| methyltransferase [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
          Length = 199

 Score = 39.0 bits (90), Expect = 0.95,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 37/103 (35%), Gaps = 13/103 (12%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDP 68
           M    +H    H      +++    P  G  +LD   G G          + VI LD DP
Sbjct: 1   MVDYWNHNTAYH-----AELLDA-VPPSGGDVLDIGCGDGLLVEKLATKATRVIGLDPDP 54

Query: 69  FAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDL 111
            A++  +  + +      +   +F      +    +DG  FDL
Sbjct: 55  RAINQARRRLTE-TPNAQVVLGSF------LTAPELDGQSFDL 90


>gi|210614221|ref|ZP_03290116.1| hypothetical protein CLONEX_02329 [Clostridium nexile DSM 1787]
 gi|210150798|gb|EEA81806.1| hypothetical protein CLONEX_02329 [Clostridium nexile DSM 1787]
          Length = 311

 Score = 39.0 bits (90), Expect = 0.95,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 29/68 (42%)

Query: 20  HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79
           H  V+  KV  LLNP P   ILD   G G YS    +   +V+A D     V   ++  +
Sbjct: 111 HREVVRPKVTELLNPDPTDYILDIACGNGNYSAYLAEKAVSVLAFDYSEKMVELAKKRQK 170

Query: 80  DYKEQFSL 87
            Y +    
Sbjct: 171 RYADHIEF 178


>gi|90419370|ref|ZP_01227280.1| putative protein-L-isoaspartate O-methyltransferase [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90336307|gb|EAS50048.1| putative protein-L-isoaspartate O-methyltransferase [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 217

 Score = 39.0 bits (90), Expect = 0.95,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 4/56 (7%)

Query: 29  IALLNPAPGKVILDATFGAG-GYSRSFCK-MGSNVIALDRDPFAVSCGQETMRDYK 82
           I L    P  V+LD   G G GYS +    +  +V++L++DP       E +    
Sbjct: 70  IQLAAIRPDDVVLD--VGCGTGYSSAVLSHLAGSVVSLEQDPDLAEAATENLARLD 123


>gi|193065133|ref|ZP_03046207.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli E22]
 gi|194426363|ref|ZP_03058918.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli B171]
 gi|260845431|ref|YP_003223209.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli O103:H2
           str. 12009]
 gi|260856895|ref|YP_003230786.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli O26:H11
           str. 11368]
 gi|192927264|gb|EDV81884.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli E22]
 gi|194415671|gb|EDX31938.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli B171]
 gi|257755544|dbj|BAI27046.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli O26:H11
           str. 11368]
 gi|257760578|dbj|BAI32075.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli O103:H2
           str. 12009]
 gi|323154829|gb|EFZ41022.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           EPECa14]
 gi|323159900|gb|EFZ45870.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           E128010]
          Length = 433

 Score = 39.0 bits (90), Expect = 0.95,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 37/90 (41%), Gaps = 3/90 (3%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82
           ++ + +  L+  P   +LD   G G ++    K  ++V+ ++  P  V  GQ+  R    
Sbjct: 274 MVARALEWLDVQPEDRVLDLFCGMGNFTLPLAKQAASVVGVEGVPALVEKGQQNARLNGL 333

Query: 83  EQFSLFQATFSQ--LQDYVPDKGVDGVVFD 110
           +  + +     +   +      G D V+ D
Sbjct: 334 QNVTFYHENLEEDVTKQPWAKNGFDKVLLD 363


>gi|225858482|ref|YP_002739992.1| SAM-dependent methyltransferase [Streptococcus pneumoniae 70585]
 gi|225721149|gb|ACO17003.1| SAM-dependent methyltransferase [Streptococcus pneumoniae 70585]
          Length = 185

 Score = 39.0 bits (90), Expect = 0.96,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 10/91 (10%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82
           L +V+         V++DAT G  G+ +    K+   V A D    A+   QE +     
Sbjct: 12  LAEVV----TKED-VVVDATMGN-GHDTLFLAKLAKQVYAFDIQKQALEKTQERLHQAGL 65

Query: 83  EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
               L       L  +V      G+ F+LG 
Sbjct: 66  TNAQLILQGHETLDQFVTKAKA-GI-FNLGY 94


>gi|218555336|ref|YP_002388249.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli IAI1]
 gi|218696384|ref|YP_002404051.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli 55989]
 gi|300815798|ref|ZP_07096022.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           107-1]
 gi|218353116|emb|CAU98943.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli 55989]
 gi|218362104|emb|CAQ99713.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli IAI1]
 gi|300531727|gb|EFK52789.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           107-1]
 gi|323946492|gb|EGB42518.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli H120]
 gi|324016362|gb|EGB85581.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           117-3]
          Length = 433

 Score = 39.0 bits (90), Expect = 0.98,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 37/90 (41%), Gaps = 3/90 (3%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82
           ++ + +  L+  P   +LD   G G ++    K  ++V+ ++  P  V  GQ+  R    
Sbjct: 274 MVARALEWLDVQPEDRVLDLFCGMGNFTLPLAKQAASVVGVEGVPALVEKGQQNARLNGL 333

Query: 83  EQFSLFQATFSQ--LQDYVPDKGVDGVVFD 110
           +  + +     +   +      G D V+ D
Sbjct: 334 QNVTFYHENLEEDVTKQPWAKNGFDKVLLD 363


>gi|115695312|ref|XP_001199139.1| PREDICTED: similar to MGC80481 protein [Strongylocentrotus
            purpuratus]
 gi|115740951|ref|XP_791145.2| PREDICTED: similar to MGC80481 protein [Strongylocentrotus
            purpuratus]
          Length = 1449

 Score = 39.0 bits (90), Expect = 0.98,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 2/68 (2%)

Query: 39   VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96
            +I+DA  G+GG +  F      V+A+D DP  +   +     Y   ++       F ++ 
Sbjct: 1295 LIVDAFCGSGGNAIQFAFTCERVVAVDIDPAKIELARHNATVYGVEDRIEFIVGDFFKVA 1354

Query: 97   DYVPDKGV 104
            DY+    V
Sbjct: 1355 DYLKADVV 1362


>gi|289581053|ref|YP_003479519.1| methyltransferase type 11 [Natrialba magadii ATCC 43099]
 gi|289530606|gb|ADD04957.1| Methyltransferase type 11 [Natrialba magadii ATCC 43099]
          Length = 207

 Score = 39.0 bits (90), Expect = 0.99,   Method: Composition-based stats.
 Identities = 11/73 (15%), Positives = 23/73 (31%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83
           +    ++LL+      +LD   G G  +    +    V ALD+    +         +  
Sbjct: 33  MRADALSLLDLEEDMTVLDVGCGTGFATEGLLEHVEEVYALDQSEHQLEQAYAKFGKHAP 92

Query: 84  QFSLFQATFSQLQ 96
                +    +L 
Sbjct: 93  PVHFHRGDAERLP 105


>gi|148985234|ref|ZP_01818457.1| rRNA methylase, putative [Streptococcus pneumoniae SP3-BS71]
 gi|148992239|ref|ZP_01821962.1| rRNA methylase, putative [Streptococcus pneumoniae SP9-BS68]
 gi|148997267|ref|ZP_01824921.1| rRNA methylase, putative [Streptococcus pneumoniae SP11-BS70]
 gi|149002339|ref|ZP_01827281.1| rRNA methylase, putative [Streptococcus pneumoniae SP14-BS69]
 gi|149020266|ref|ZP_01835158.1| rRNA methylase, putative [Streptococcus pneumoniae SP23-BS72]
 gi|168482881|ref|ZP_02707833.1| SAM-dependent methyltransferase [Streptococcus pneumoniae
           CDC1873-00]
 gi|168488333|ref|ZP_02712532.1| SAM-dependent methyltransferase [Streptococcus pneumoniae SP195]
 gi|168492272|ref|ZP_02716415.1| SAM-dependent methyltransferase [Streptococcus pneumoniae
           CDC0288-04]
 gi|168492810|ref|ZP_02716953.1| SAM-dependent methyltransferase [Streptococcus pneumoniae
           CDC3059-06]
 gi|168575323|ref|ZP_02721259.1| SAM-dependent methyltransferase [Streptococcus pneumoniae MLV-016]
 gi|221231470|ref|YP_002510622.1| rRNA methylase [Streptococcus pneumoniae ATCC 700669]
 gi|225854180|ref|YP_002735692.1| SAM-dependent methyltransferase [Streptococcus pneumoniae JJA]
 gi|225860645|ref|YP_002742154.1| SAM-dependent methyltransferase [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|237650321|ref|ZP_04524573.1| hypothetical protein SpneC1_06279 [Streptococcus pneumoniae CCRI
           1974]
 gi|237821694|ref|ZP_04597539.1| hypothetical protein SpneC19_05192 [Streptococcus pneumoniae CCRI
           1974M2]
 gi|298230021|ref|ZP_06963702.1| hypothetical protein SpneCMD_05066 [Streptococcus pneumoniae str.
           Canada MDR_19F]
 gi|298254125|ref|ZP_06977711.1| hypothetical protein SpneCM_00732 [Streptococcus pneumoniae str.
           Canada MDR_19A]
 gi|298502448|ref|YP_003724388.1| rRNA methylase [Streptococcus pneumoniae TCH8431/19A]
 gi|303254765|ref|ZP_07340866.1| hypothetical protein CGSSpBS455_04863 [Streptococcus pneumoniae
           BS455]
 gi|303259926|ref|ZP_07345900.1| hypothetical protein CGSSp9vBS293_03943 [Streptococcus pneumoniae
           SP-BS293]
 gi|303261331|ref|ZP_07347279.1| hypothetical protein CGSSp14BS292_08330 [Streptococcus pneumoniae
           SP14-BS292]
 gi|303263997|ref|ZP_07349918.1| hypothetical protein CGSSpBS397_05302 [Streptococcus pneumoniae
           BS397]
 gi|303266311|ref|ZP_07352201.1| hypothetical protein CGSSpBS457_04782 [Streptococcus pneumoniae
           BS457]
 gi|303269776|ref|ZP_07355526.1| hypothetical protein CGSSpBS458_01919 [Streptococcus pneumoniae
           BS458]
 gi|307067272|ref|YP_003876238.1| SAM-dependent methyltransferase [Streptococcus pneumoniae AP200]
 gi|147756967|gb|EDK64007.1| rRNA methylase, putative [Streptococcus pneumoniae SP11-BS70]
 gi|147759654|gb|EDK66645.1| rRNA methylase, putative [Streptococcus pneumoniae SP14-BS69]
 gi|147922432|gb|EDK73551.1| rRNA methylase, putative [Streptococcus pneumoniae SP3-BS71]
 gi|147928865|gb|EDK79877.1| rRNA methylase, putative [Streptococcus pneumoniae SP9-BS68]
 gi|147930568|gb|EDK81550.1| rRNA methylase, putative [Streptococcus pneumoniae SP23-BS72]
 gi|172043844|gb|EDT51890.1| SAM-dependent methyltransferase [Streptococcus pneumoniae
           CDC1873-00]
 gi|183572979|gb|EDT93507.1| SAM-dependent methyltransferase [Streptococcus pneumoniae SP195]
 gi|183573546|gb|EDT94074.1| SAM-dependent methyltransferase [Streptococcus pneumoniae
           CDC0288-04]
 gi|183577040|gb|EDT97568.1| SAM-dependent methyltransferase [Streptococcus pneumoniae
           CDC3059-06]
 gi|183578412|gb|EDT98940.1| SAM-dependent methyltransferase [Streptococcus pneumoniae MLV-016]
 gi|220673930|emb|CAR68439.1| putative rRNA methylase [Streptococcus pneumoniae ATCC 700669]
 gi|225723979|gb|ACO19832.1| SAM-dependent methyltransferase [Streptococcus pneumoniae JJA]
 gi|225727226|gb|ACO23077.1| SAM-dependent methyltransferase [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298238043|gb|ADI69174.1| rRNA methylase [Streptococcus pneumoniae TCH8431/19A]
 gi|301799692|emb|CBW32257.1| putative rRNA methylase [Streptococcus pneumoniae OXC141]
 gi|301801517|emb|CBW34209.1| putative rRNA methylase [Streptococcus pneumoniae INV200]
 gi|302598305|gb|EFL65350.1| hypothetical protein CGSSpBS455_04863 [Streptococcus pneumoniae
           BS455]
 gi|302637465|gb|EFL67952.1| hypothetical protein CGSSp14BS292_08330 [Streptococcus pneumoniae
           SP14-BS292]
 gi|302638845|gb|EFL69306.1| hypothetical protein CGSSpBS293_03943 [Streptococcus pneumoniae
           SP-BS293]
 gi|302640698|gb|EFL71095.1| hypothetical protein CGSSpBS458_01919 [Streptococcus pneumoniae
           BS458]
 gi|302644122|gb|EFL74379.1| hypothetical protein CGSSpBS457_04782 [Streptococcus pneumoniae
           BS457]
 gi|302646402|gb|EFL76628.1| hypothetical protein CGSSpBS397_05302 [Streptococcus pneumoniae
           BS397]
 gi|306408809|gb|ADM84236.1| SAM-dependent methyltransferase [Streptococcus pneumoniae AP200]
 gi|327390384|gb|EGE88725.1| rRNA methylase [Streptococcus pneumoniae GA04375]
 gi|332075948|gb|EGI86414.1| rRNA methylase [Streptococcus pneumoniae GA41301]
          Length = 185

 Score = 39.0 bits (90), Expect = 0.99,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 10/91 (10%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82
           L +V+         V++DAT G  G+ +    K+   V A D    A+   QE +     
Sbjct: 12  LAEVV----TKED-VVVDATMGN-GHDTLFLAKLAKQVYAFDIQKQALEKTQERLHQAGL 65

Query: 83  EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
               L       L  +V      G+ F+LG 
Sbjct: 66  TNAQLILQGHETLDQFVTKAKA-GI-FNLGY 94


>gi|15902615|ref|NP_358165.1| hypothetical protein spr0571 [Streptococcus pneumoniae R6]
 gi|116516252|ref|YP_816066.1| hypothetical protein SPD_0567 [Streptococcus pneumoniae D39]
 gi|182683579|ref|YP_001835326.1| hypothetical protein SPCG_0609 [Streptococcus pneumoniae CGSP14]
 gi|15458150|gb|AAK99375.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
 gi|116076828|gb|ABJ54548.1| rRNA methylase, putative [Streptococcus pneumoniae D39]
 gi|182628913|gb|ACB89861.1| hypothetical protein SPCG_0609 [Streptococcus pneumoniae CGSP14]
          Length = 187

 Score = 39.0 bits (90), Expect = 0.99,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 10/91 (10%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82
           L +V+         V++DAT G  G+ +    K+   V A D    A+   QE +     
Sbjct: 14  LAEVV----TKED-VVVDATMGN-GHDTLFLAKLAKQVYAFDIQKQALEKTQERLHQAGL 67

Query: 83  EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
               L       L  +V      G+ F+LG 
Sbjct: 68  TNAQLILQGHETLDQFVTKAKA-GI-FNLGY 96


>gi|260584770|ref|ZP_05852515.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Granulicatella elegans
           ATCC 700633]
 gi|260157427|gb|EEW92498.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Granulicatella elegans
           ATCC 700633]
          Length = 455

 Score = 39.0 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 1/66 (1%)

Query: 23  VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR-DY 81
           VL  + I        + ++DA  G G  S +F K    V A++  P A+   +E  R + 
Sbjct: 294 VLYHEAIQAAGLTGDETVVDAYCGIGTMSLAFAKRAKKVYAMEIVPDAIQMAKENARINQ 353

Query: 82  KEQFSL 87
            +  + 
Sbjct: 354 IDNVTF 359


>gi|332687128|ref|YP_004456902.1| SAM-dependent methyltransferase, MraW methylase family
           [Melissococcus plutonius ATCC 35311]
 gi|332371137|dbj|BAK22093.1| SAM-dependent methyltransferase, MraW methylase family
           [Melissococcus plutonius ATCC 35311]
          Length = 187

 Score = 39.0 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 11/96 (11%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETM-- 78
           LL ++       PG  ++DAT G G  +    K+      V A D    A+   ++ +  
Sbjct: 12  LLNEI-----ICPGDHVVDATMGNGNDTLFLAKLVGDKGKVYAFDIQKQALERTRQRLIE 66

Query: 79  RDYKEQFSLFQATFSQLQDYVP-DKGVDGVVFDLGV 113
               +   LFQ     ++  +P +  +   +F+LG 
Sbjct: 67  NQVIQCTELFQQGHETIEQVLPIETTLSAAIFNLGY 102


>gi|330012192|ref|ZP_08307325.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Klebsiella sp. MS
           92-3]
 gi|328533894|gb|EGF60562.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Klebsiella sp. MS
           92-3]
          Length = 434

 Score = 39.0 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 32/89 (35%), Gaps = 3/89 (3%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82
           ++   +  L+  P   +LD   G G ++       ++V+ ++  P  V  G+E       
Sbjct: 274 MVRTALEWLDLRPEDRVLDLFCGMGNFTLPLATRAAHVVGVEGVPALVEKGRENAARNGL 333

Query: 83  EQFSLFQATFSQ--LQDYVPDKGVDGVVF 109
              + F     +   +      G D V+ 
Sbjct: 334 SNVTFFHENLEEDVTRQAWAKHGFDKVLL 362


>gi|254824274|ref|ZP_05229275.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
 gi|254852289|ref|ZP_05241637.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
 gi|255521499|ref|ZP_05388736.1| hypothetical protein LmonocFSL_09805 [Listeria monocytogenes FSL
           J1-175]
 gi|258605595|gb|EEW18203.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
 gi|293593509|gb|EFG01270.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
          Length = 192

 Score = 39.0 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 33/86 (38%), Gaps = 8/86 (9%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK--EQFSL 87
             PG   +DAT G  G+             +V+  D    AV   +  + +     Q  L
Sbjct: 18  VRPGDYAIDATCGN-GHDTLLLAELVGINGHVLGFDIQQMAVDATKARLENAGVSSQVEL 76

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGV 113
             A+ +++  Y   + V   +F+LG 
Sbjct: 77  VCASHARIPAY-TSRPVRAAIFNLGY 101


>gi|294495588|ref|YP_003542081.1| methyltransferase type 12 [Methanohalophilus mahii DSM 5219]
 gi|292666587|gb|ADE36436.1| Methyltransferase type 12 [Methanohalophilus mahii DSM 5219]
          Length = 187

 Score = 39.0 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 55/156 (35%), Gaps = 14/156 (8%)

Query: 29  IALLNPAPGKVILDATFGAGG-----YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83
           I  L     + ILD  FG GG     +         N++ +D   F +   ++ M+D+  
Sbjct: 30  IQGLQLKGDENILD--FGCGGGAASKHIAEALSDSGNLVCIDTSAFWMEKAKKRMKDF-S 86

Query: 84  QFSLFQATFSQL---QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR---M 137
                           DY     +  V+ D+  +  Q       F  +K+G + +R    
Sbjct: 87  NVEFICERIEDANLPDDYFDSVFIHFVLHDIDENDRQEILNSLAFKLKKNGLIYIREPTK 146

Query: 138 SCSGISASDVVNQANVKDLTRILGILGEEKQASRIA 173
           +  G+S  ++V       L  + G+ GE  +     
Sbjct: 147 NDHGMSPVEIVEHMKKAGLAELSGMHGEYFRWPHYT 182


>gi|240139687|ref|YP_002964164.1| putative SUN-family protein, RNA methyltransferase
           [Methylobacterium extorquens AM1]
 gi|240009661|gb|ACS40887.1| putative SUN-family protein, RNA methyltransferase
           [Methylobacterium extorquens AM1]
          Length = 449

 Score = 39.0 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 10/84 (11%)

Query: 35  APGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMRDYKEQFSLF--- 88
             G+ ++D   G GG S +        +++IA D DP  ++   E +R    Q  +    
Sbjct: 249 KSGETVVDLCAGGGGKSLALAAITGNAAHIIATDADPRRLAPIHERLRRSGAQVEVRTPR 308

Query: 89  --QATFSQLQDYVPDKGVDGVVFD 110
             +A    L D   D  VD V+ D
Sbjct: 309 TGKARADVLADL--DGTVDRVLVD 330


>gi|298248548|ref|ZP_06972353.1| Methyltransferase type 12 [Ktedonobacter racemifer DSM 44963]
 gi|297551207|gb|EFH85073.1| Methyltransferase type 12 [Ktedonobacter racemifer DSM 44963]
          Length = 176

 Score = 39.0 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 34/82 (41%), Gaps = 8/82 (9%)

Query: 35  APGKVILDATFGAGGYSRS---FCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91
           APG    D   G G ++ +       G+++ ++D+D  A+   QE  R  + +F      
Sbjct: 16  APGGTWADLGSGGGAFTLALANLLGSGAHIYSVDQDKRAL---QEQARAMRARFPAVAVE 72

Query: 92  F--SQLQDYVPDKGVDGVVFDL 111
           +  +     +    +DG++   
Sbjct: 73  YIVADFTRLLNLPPLDGILLAN 94


>gi|223043516|ref|ZP_03613561.1| SAM-dependent methyltransferase, MraW methylase family
           [Staphylococcus capitis SK14]
 gi|314933913|ref|ZP_07841278.1| SAM-dependent methyltransferase, MraW methylase family
           [Staphylococcus caprae C87]
 gi|222443004|gb|EEE49104.1| SAM-dependent methyltransferase, MraW methylase family
           [Staphylococcus capitis SK14]
 gi|313654063|gb|EFS17820.1| SAM-dependent methyltransferase, MraW methylase family
           [Staphylococcus caprae C87]
          Length = 187

 Score = 39.0 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 6/80 (7%)

Query: 39  VILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ 96
           +++DAT G G  +    +      V   D    A+   Q  + D+    SL Q +   ++
Sbjct: 23  IVIDATCGNGNDTLYLAEKVTNGFVYGFDIQKEAIDNTQLKVSDF-NNVSLIQDSHENVK 81

Query: 97  DYVPDKG---VDGVVFDLGV 113
            +V ++    +D  +F+LG 
Sbjct: 82  QHVLERHLNLIDCAIFNLGY 101


>gi|170765935|ref|ZP_02900746.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia albertii
           TW07627]
 gi|170125081|gb|EDS94012.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia albertii
           TW07627]
          Length = 433

 Score = 39.0 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 34/90 (37%), Gaps = 3/90 (3%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82
           ++ + +  L+  P   +LD   G G ++       ++V+ ++  P  V  GQE  R    
Sbjct: 274 MVAQALEWLDVQPDDRVLDLFCGMGNFTLPVATRAASVVGVEGVPALVEKGQENARLNGL 333

Query: 83  EQFSLFQATFSQ--LQDYVPDKGVDGVVFD 110
              + +         +      G D V+ D
Sbjct: 334 HNVTFYHENLEDDVTKQPWAKNGFDKVLLD 363


>gi|268590145|ref|ZP_06124366.1| SmtA protein [Providencia rettgeri DSM 1131]
 gi|291314419|gb|EFE54872.1| SmtA protein [Providencia rettgeri DSM 1131]
          Length = 262

 Score = 39.0 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 7/74 (9%)

Query: 40  ILDATFGAG-GY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQL 95
           ILDA  G G G+ SR   +MG  VI  D     +  G E  ++    +           +
Sbjct: 49  ILDA--GGGEGHFSRKLAEMGHQVILCDLSEEMLERGSELAKEQGISDNMRFVHCAVQDI 106

Query: 96  QDYVPDKGVDGVVF 109
             Y+ +  VD V+F
Sbjct: 107 AQYIDEP-VDLVLF 119


>gi|218884374|ref|YP_002428756.1| RNA (Cytosine-C(5)-)-methyltransferase [Desulfurococcus
           kamchatkensis 1221n]
 gi|218765990|gb|ACL11389.1| RNA (Cytosine-C(5)-)-methyltransferase [Desulfurococcus
           kamchatkensis 1221n]
          Length = 386

 Score = 39.0 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 6/89 (6%)

Query: 32  LNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK---EQF 85
           L+P PG++I+D     GG   +     K G+ +IA+DR P  ++  +  + +        
Sbjct: 185 LDPRPGELIVDMNASPGGKTSHIVQLTKGGARIIAIDRSPGKIAELKNNLSNLDLDLNVI 244

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
           ++   +     D+     VD V+ D   S
Sbjct: 245 AIPHDSRYLHYDFSLLGKVDKVLIDPPCS 273


>gi|253699523|ref|YP_003020712.1| rRNA methylase [Geobacter sp. M21]
 gi|251774373|gb|ACT16954.1| putative rRNA methylase [Geobacter sp. M21]
          Length = 195

 Score = 39.0 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 8/84 (9%)

Query: 36  PGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQ--- 89
           PG ++LDAT G G  +    ++   G  V A D  P A++  +  +     + +      
Sbjct: 24  PGDLVLDATCGNGFDTLLLAELTGEGGEVWAFDVQPRAIAATRALLEREG-RLAAVHLLE 82

Query: 90  ATFSQLQDYVPDKGVDGVVFDLGV 113
           A   ++ ++VP  G+   VF+LG 
Sbjct: 83  AGHERVSEFVPA-GLAAAVFNLGY 105


>gi|325924132|ref|ZP_08185695.1| methylase involved in ubiquinone/menaquinone biosynthesis
           [Xanthomonas gardneri ATCC 19865]
 gi|325545369|gb|EGD16660.1| methylase involved in ubiquinone/menaquinone biosynthesis
           [Xanthomonas gardneri ATCC 19865]
          Length = 232

 Score = 39.0 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 9/103 (8%)

Query: 15  HTIGDHVPVLLEKVIALLNPAP----GKVILDATFGAGGYSRSFCKMGS-NVIALDRDPF 69
           +    H PV+L +  A+L   P    G+ +LDA  G+G Y     + G+ ++  +D  P 
Sbjct: 20  YPPHAHNPVMLAEERAMLALMPGALQGQHVLDAGCGSGRYMLHALRRGALHITGVDLSPQ 79

Query: 70  AVS-CGQETMRDYK-EQFSLFQATFSQ--LQDYVPDKGVDGVV 108
            +     E  RD+   + +L Q +  +  L D + D  V G+V
Sbjct: 80  MLQRAATELARDWPAARVTLQQGSLDKLPLPDALADLSVCGLV 122


>gi|313892229|ref|ZP_07825822.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Dialister
           microaerophilus UPII 345-E]
 gi|313119367|gb|EFR42566.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Dialister
           microaerophilus UPII 345-E]
          Length = 545

 Score = 39.0 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 38/93 (40%), Gaps = 2/93 (2%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83
           L EK +   N    + ++DA  G G  S    +   +VI ++    A+   +E  +  + 
Sbjct: 293 LYEKALDFANLFGDETVIDAYCGTGTISLYLAQKAKHVIGIEIIKDAIENAKENAK--RN 350

Query: 84  QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSM 116
           +    +   + +  Y+P+    G+  ++ V   
Sbjct: 351 KIKNVEFHAADVAKYLPELAKKGIKAEVMVLDP 383


>gi|15603426|ref|NP_246500.1| hypothetical protein PM1561 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|46397017|sp|Q9CKP7|RSMB_PASMU RecName: Full=Ribosomal RNA small subunit methyltransferase B;
           AltName: Full=16S rRNA m5C967 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           rsmB
 gi|12721953|gb|AAK03645.1| Sun [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 446

 Score = 39.0 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 2/82 (2%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88
           LL P  G++ILDA    GG +    +     +V+ALD +   +    E +   ++Q ++ 
Sbjct: 248 LLAPENGELILDACAAPGGKTTHILEQAPQAHVVALDVEATRLKRVHENLARMQQQATVI 307

Query: 89  QATFSQLQDYVPDKGVDGVVFD 110
               +Q   ++       V FD
Sbjct: 308 CGDATQPAQWLKQLSESAVQFD 329


>gi|326384262|ref|ZP_08205944.1| type 11 methyltransferase [Gordonia neofelifaecis NRRL B-59395]
 gi|326197127|gb|EGD54319.1| type 11 methyltransferase [Gordonia neofelifaecis NRRL B-59395]
          Length = 240

 Score = 39.0 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 20/37 (54%)

Query: 30 ALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDR 66
            L+  PG  ++D   G G +S    + G++VIA D+
Sbjct: 4  DRLDVGPGVRVIDIGAGQGRHSYEMLRRGADVIAFDQ 40


>gi|255544606|ref|XP_002513364.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus
           communis]
 gi|223547272|gb|EEF48767.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus
           communis]
          Length = 286

 Score = 39.0 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 48/120 (40%), Gaps = 26/120 (21%)

Query: 7   KTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGY-SRSFCKM------GS 59
           K  ++ + H +  H  VL            G  ++DAT G  G+ + +  KM        
Sbjct: 76  KKKATEVAHLVWKH--VL----------QKGDTVVDATCGN-GHDTLALLKMVADESGNG 122

Query: 60  NVIALDRDPFAVSCGQETM-----RDYKEQFSLFQATFSQLQDYVPDK-GVDGVVFDLGV 113
           +V  +D    A+      +      + KE   LF    S++++ VP+   V  V F+LG 
Sbjct: 123 HVYGMDIQSDALDNTSSLLDETVTSEEKELVKLFSICHSRMEEIVPENTPVRLVAFNLGY 182


>gi|18976541|ref|NP_577898.1| nol1-nop2-sun family nucleolar protein III [Pyrococcus furiosus DSM
           3638]
 gi|18892094|gb|AAL80293.1| putative nucleolar protein III (nol1-nop2-sun family) [Pyrococcus
           furiosus DSM 3638]
          Length = 386

 Score = 39.0 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 34/91 (37%), Gaps = 11/91 (12%)

Query: 32  LNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQFSL 87
           L P   ++I+D     GG   +     +    +IA+D+    +   +E ++    +   L
Sbjct: 194 LEPKEEEIIIDMAAAPGGKTSHIAQLLQNRGEIIAIDKSKNRLKKMEENLKRLGVKNVKL 253

Query: 88  FQATFSQLQDYVPDKGVDGVVFD-----LGV 113
            Q     L +       D ++ D     LGV
Sbjct: 254 IQMDARNLPEL--GIKADKILLDAPCTALGV 282


>gi|85711007|ref|ZP_01042068.1| tRNA and rRNA methylase [Idiomarina baltica OS145]
 gi|85695411|gb|EAQ33348.1| tRNA and rRNA methylase [Idiomarina baltica OS145]
          Length = 437

 Score = 39.0 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/88 (17%), Positives = 30/88 (34%), Gaps = 3/88 (3%)

Query: 30  ALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDYKEQFS 86
            +++  P   +LD     GG +    +       +IA+D D   +    E +        
Sbjct: 247 DMVDAQPEHRVLDCCAAPGGKTVHLLERTEFQTPLIAIDVDEQRLERVSENLYRADLSCE 306

Query: 87  LFQATFSQLQDYVPDKGVDGVVFDLGVS 114
           +  A    L  +   +  D ++ D   S
Sbjct: 307 VVCADVLDLDSWWDKQPFDRILLDAPCS 334


>gi|307091868|gb|ADN28269.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 123

 Score = 39.0 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 32/68 (47%), Gaps = 2/68 (2%)

Query: 46  GAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDY-VPDKG 103
           G GG +R+    G+  VIA++RD  A++  +E    +  + ++      +     + + G
Sbjct: 27  GPGGLTRALLTEGARKVIAIERDQRAIAALEEIAEHHPGRLTIVAGDALEFDPKPLLESG 86

Query: 104 VDGVVFDL 111
              +V +L
Sbjct: 87  PVRIVANL 94


>gi|226311849|ref|YP_002771743.1| transcriptional regulator [Brevibacillus brevis NBRC 100599]
 gi|226094797|dbj|BAH43239.1| probable transcriptional regulator [Brevibacillus brevis NBRC
           100599]
          Length = 345

 Score = 39.0 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 1/69 (1%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84
           L++V+A +   PG+  LDA  G G  +    K G+ +   D+ P  +   +    + + +
Sbjct: 167 LDEVVAAVAVKPGECGLDAGTGTGNLAGRLVKKGAKMSGFDQSPQMLKQCRAKHAEVETK 226

Query: 85  F-SLFQATF 92
             + F   F
Sbjct: 227 LGTFFAFPF 235


>gi|168044055|ref|XP_001774498.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674210|gb|EDQ60722.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 208

 Score = 39.0 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 12/102 (11%)

Query: 14  HHTIGDHV-PVLLEKVIALLNPAPGKVILD-----ATFGAGGYSRSFCKMGSNVIALDRD 67
            +  G H+   +L           GKV+ D      T G    + +    G  V+ +D D
Sbjct: 25  QYPTGPHIASRMLYMAENSFGDITGKVVADLGCGCGTLGI---AAALLDAG-QVVGVDVD 80

Query: 68  PFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVF 109
             A++  QE   + + +  L QA  S+L   +    VD VV 
Sbjct: 81  EDALALAQENCEELEVEMDLIQANLSELP--LQGLVVDTVVM 120


>gi|114562226|ref|YP_749739.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella
           frigidimarina NCIMB 400]
 gi|122300475|sp|Q086B4|RUMA_SHEFN RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|114333519|gb|ABI70901.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shewanella
           frigidimarina NCIMB 400]
          Length = 455

 Score = 39.0 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 39/89 (43%), Gaps = 2/89 (2%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET-MRDYK 82
           ++++ I  L+P  G+ ILD   G G +S       + VI ++  P  V   ++  + +  
Sbjct: 297 MVDQAIEWLDPQSGERILDLFCGVGNFSLPLALKAAEVIGVEGVPEMVQQAKQNAIDNQL 356

Query: 83  EQFSLFQATFS-QLQDYVPDKGVDGVVFD 110
           +  + + A  S  L        +D ++ D
Sbjct: 357 DNVTFYHADLSADLSTQTWLGKIDKLLLD 385


>gi|83815307|ref|YP_445018.1| ribosomal RNA small subunit methyltransferase B [Salinibacter ruber
           DSM 13855]
 gi|83756701|gb|ABC44814.1| ribosomal RNA small subunit methyltransferase B [Salinibacter ruber
           DSM 13855]
          Length = 427

 Score = 39.0 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 41/90 (45%), Gaps = 7/90 (7%)

Query: 28  VIALLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84
           V+ LL+P PG+ ++D     GG   ++ +  +    + A+DRD   +    ET  + +  
Sbjct: 224 VVQLLDPQPGETLIDGCAAPGGKAMHAAARMEGTGTIYAVDRDEQRLER-VETAAEAQGA 282

Query: 85  FSLFQATFSQLQDYVPDKGV---DGVVFDL 111
             + +A  + L+ +         D V+ D+
Sbjct: 283 SEMVEAETADLRAWAARPEPPQGDRVLLDV 312


>gi|195449996|ref|XP_002072318.1| GK22390 [Drosophila willistoni]
 gi|194168403|gb|EDW83304.1| GK22390 [Drosophila willistoni]
          Length = 226

 Score = 39.0 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 43/119 (36%), Gaps = 16/119 (13%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQ 96
           +I+DA  G GG +  F      VIA+D D   ++  +   + Y    +     A F Q  
Sbjct: 52  LIVDAFCGCGGNAIQFALTCQRVIAIDIDAQKLAMAKHNAKIYNVDHKIEFIHADFLQFA 111

Query: 97  D--YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANV 153
               +    V          S      +    + K    D+ ++   + A++++N A  
Sbjct: 112 KSTLLKPNMV--------FLSPPWGGPE----YLKHANFDIELNLLPVGATELMNCARQ 158


>gi|193216311|ref|YP_001997510.1| type 11 methyltransferase [Chloroherpeton thalassium ATCC 35110]
 gi|193089788|gb|ACF15063.1| Methyltransferase type 11 [Chloroherpeton thalassium ATCC 35110]
          Length = 213

 Score = 39.0 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 37/99 (37%), Gaps = 6/99 (6%)

Query: 26  EKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQ 84
           ++V  +L   PG  +LD   G G +S    + G  V  +D     +S  ++ + + +   
Sbjct: 31  DRVFDVL--KPGAKVLDIGCGTGNFSIKMARRGFQVTGVDISGEMISVAKKRLMETRLPN 88

Query: 85  FSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDR 123
                     L D + +     ++     S  ++   +R
Sbjct: 89  LQFLHINGVYLPDELNEHYDAAILS---FSIHEMAPPER 124


>gi|134045414|ref|YP_001096900.1| precorrin-6Y C5,15-methyltransferase subunit CbiT [Methanococcus
           maripaludis C5]
 gi|166225720|sp|A4FWV6|CBIT_METM5 RecName: Full=Probable cobalt-precorrin-6Y C(15)-methyltransferase
           [decarboxylating]
 gi|132663039|gb|ABO34685.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Methanococcus maripaludis C5]
          Length = 181

 Score = 39.0 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 8/94 (8%)

Query: 21  VPVLLEKV----IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQE 76
           VP+  E++    I  LN  P  ++LD   G+GG S    K    V ++D    A +    
Sbjct: 13  VPITKEEIRAVSIGKLNLDPEDIVLDIGCGSGGMSVEIAKRSKFVYSIDNSEDAKNTTSI 72

Query: 77  TMRDYK-EQFSLFQATFSQLQDYVPDKGVDGVVF 109
            ++ +K E   +F       +D +     + V  
Sbjct: 73  NLKKFKIENCEVFHG---DAKDLISKFDFNKVFI 103


>gi|332185131|ref|ZP_08386880.1| NOL1/NOP2/sun family protein [Sphingomonas sp. S17]
 gi|332014855|gb|EGI56911.1| NOL1/NOP2/sun family protein [Sphingomonas sp. S17]
          Length = 395

 Score = 39.0 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 39/96 (40%), Gaps = 14/96 (14%)

Query: 30  ALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQETMRDYKEQ-- 84
           A L P PG+ ++D   GAGG +            ++A D D   +    + +    E+  
Sbjct: 197 AALAPQPGEWLVDLCAGAGGKTLQIGAAMDNRGALLACDIDRARL----QRLAPRAERAG 252

Query: 85  FSLFQA---TFSQLQDYVPDK--GVDGVVFDLGVSS 115
            ++ ++      + ++ + D     DGV+ D   S 
Sbjct: 253 VTIVESRLLNPGREREMLSDWIAKADGVLIDAPCSG 288


>gi|149177324|ref|ZP_01855929.1| Putative rRNA methylase superfamily protein [Planctomyces maris DSM
           8797]
 gi|148843849|gb|EDL58207.1| Putative rRNA methylase superfamily protein [Planctomyces maris DSM
           8797]
          Length = 189

 Score = 39.0 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 9/87 (10%)

Query: 35  APGKVILDATFGAGGY-SRSFCKMG---SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQ 89
            PG+  +DAT G  G+ +R  C++      V A+D    A+      +++ +   F L  
Sbjct: 17  QPGETAVDATAGN-GHDTRFLCELAGKSGKVFAIDIQQQALDQTAVMLQELEYHNFELIC 75

Query: 90  ATFSQLQDYVP---DKGVDGVVFDLGV 113
                + + +P      +  V+F+LG 
Sbjct: 76  GDHRLISELIPTQYQGRIGAVMFNLGY 102


>gi|126739968|ref|ZP_01755658.1| protein-L-isoaspartate O-methyltransferase [Roseobacter sp.
           SK209-2-6]
 gi|126718787|gb|EBA15499.1| protein-L-isoaspartate O-methyltransferase [Roseobacter sp.
           SK209-2-6]
          Length = 217

 Score = 39.0 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 42/107 (39%), Gaps = 11/107 (10%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYKE 83
           L KV+  L+  P +++LD   G  GYS +     +  VI ++ D    +  QE +     
Sbjct: 67  LAKVLDALDIQPNELVLDVACGQ-GYSTAVAAQMAEMVIGVEEDETMAAEAQEQLSTIGA 125

Query: 84  QFSLFQATFSQLQDYVPDKG-VDGVVFDLGV------SSMQIDCGDR 123
             ++       L +   + G  D ++   GV         Q+  G R
Sbjct: 126 DNAIVH--MGPLTEGAAEHGPYDVIMVQGGVETVPEGLLNQLKDGGR 170


>gi|242238299|ref|YP_002986480.1| 23S rRNA 5-methyluridine methyltransferase [Dickeya dadantii
           Ech703]
 gi|242130356|gb|ACS84658.1| RNA methyltransferase, TrmA family [Dickeya dadantii Ech703]
          Length = 442

 Score = 39.0 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 37/90 (41%), Gaps = 3/90 (3%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82
           ++ + +  L+P P + +LD   G G ++    +  ++V+ ++     V  G+E       
Sbjct: 280 MVAQALEWLDPQPHERVLDLFCGMGNFTLPLARRAASVVGVEGVAALVEKGRENAERNAF 339

Query: 83  EQFSLFQATFSQ--LQDYVPDKGVDGVVFD 110
              + F     +   +     +G D ++ D
Sbjct: 340 GNVTFFHQNLEEDVTRQPWAAQGFDKILLD 369


>gi|224046260|ref|XP_002197924.1| PREDICTED: trimethylguanosine synthase homolog [Taeniopygia
           guttata]
          Length = 892

 Score = 38.6 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 33/91 (36%), Gaps = 8/91 (8%)

Query: 11  SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFA 70
           S     I +H+ V   +V    N     +I+DA  G GG +  F      VIA+D DP  
Sbjct: 712 SVTPEKIAEHIAV---RVSQSFNCD---IIVDAFCGVGGNAIQFALTSKRVIAIDIDPEK 765

Query: 71  VSCGQETMRDYK--EQFSLFQATFSQLQDYV 99
           +   +     Y   E        F  L   +
Sbjct: 766 LRLARHNAEVYGVAEHIDFLCGDFMALAAGL 796


>gi|222153492|ref|YP_002562669.1| RNA methyltransferase [Streptococcus uberis 0140J]
 gi|222114305|emb|CAR42966.1| putative RNA methyltransferase [Streptococcus uberis 0140J]
          Length = 451

 Score = 38.6 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 38/95 (40%), Gaps = 12/95 (12%)

Query: 21  VPVLLEKVIALLNPAPGKVILD-----ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQ 75
             VL  +V+  L  +    I+D      T G      +F K   ++  +D  P A+   +
Sbjct: 290 TSVLYAQVVEALEVSESDHIIDAYCGVGTIGF-----AFAKKVKSIRGMDIIPEAIEDAK 344

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFD 110
           +  +D   + + ++    + +D +P    DG   D
Sbjct: 345 KNAQDMGFENTYYEC--GKAEDIIPKWYQDGYRAD 377


>gi|2246452|gb|AAB62807.1| S-adenosyl-methionine-sterol-C-methyltransferase homolog [Nicotiana
           tabacum]
          Length = 352

 Score = 38.6 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 34/88 (38%), Gaps = 7/88 (7%)

Query: 25  LEK--VIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPF--AVSCGQETMR 79
           L +   + LL   PG  +LDA  G GG  R+     G+N++ +  + +    +       
Sbjct: 105 LHEEMAVDLLGIKPGARVLDAGCGVGGPMRAIAAHSGANIVGITINEYQVNRARAHNKKA 164

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGV 107
               Q  +    F Q+     D   DGV
Sbjct: 165 GLDSQCEVVCGNFLQMP--FDDNSFDGV 190


>gi|332687203|ref|YP_004456977.1| TrmA family RNA methyltransferase [Melissococcus plutonius ATCC
           35311]
 gi|332371212|dbj|BAK22168.1| RNA methyltransferase, TrmA family [Melissococcus plutonius ATCC
           35311]
          Length = 212

 Score = 38.6 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 37/96 (38%), Gaps = 13/96 (13%)

Query: 23  VLLEKVIALLNPAPGKVILD-----ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77
           +L  + I  L+P P   I+D      T G      S  +    V  +D  P A+   ++ 
Sbjct: 52  ILYGEAIKALDPLPSDKIIDAYCGVGTIG-----ISIARKVKEVRGMDTIPQAIEDAKQN 106

Query: 78  MRDYKEQFSLFQ-ATFSQLQDYVPDKGV--DGVVFD 110
            +      + ++     +L     ++G   DG++ D
Sbjct: 107 AKKVNATNTYYEVGNAEKLLPKWLEQGFIPDGIIVD 142


>gi|285019616|ref|YP_003377327.1| tRNA and rRNA cytosine-c5-methylase [Xanthomonas albilineans GPE
           PC73]
 gi|283474834|emb|CBA17333.1| putative trna and rrna cytosine-c5-methylase protein [Xanthomonas
           albilineans]
          Length = 437

 Score = 38.6 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 38/93 (40%), Gaps = 4/93 (4%)

Query: 26  EKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKE 83
           ++V  +L PAPG  +LDA    GG S    +      + ALD D   +   +ET      
Sbjct: 237 QQVADVLAPAPGARVLDACAAPGGKSAHLLERDPTLCLTALDVDARRLQRVRETFERIGS 296

Query: 84  --QFSLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
             Q  L  A  +Q Q +      D V+ D   S
Sbjct: 297 GTQARLQVADAAQPQTWWDGVPFDAVLLDAPCS 329


>gi|194398444|ref|YP_002037310.1| hypothetical protein SPG_0595 [Streptococcus pneumoniae G54]
 gi|194358111|gb|ACF56559.1| conserved hypothetical protein [Streptococcus pneumoniae G54]
          Length = 185

 Score = 38.6 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 10/91 (10%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82
           L +V+         V++DAT G  G+ +    K+   V A D    A+   QE +     
Sbjct: 12  LAEVV----TKED-VVVDATMGN-GHDTLFLAKLAKQVYAFDIQKQALKKTQERLHQAGL 65

Query: 83  EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
               L       L  +V      G+ F+LG 
Sbjct: 66  TNAQLILQGHETLDQFVTKTKA-GI-FNLGY 94


>gi|20093808|ref|NP_613655.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
 gi|19886728|gb|AAM01585.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
          Length = 323

 Score = 38.6 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 12/108 (11%)

Query: 11  SAIHHTIGDHVPV----LLEKVIALLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIA 63
           + + + +G +VP     +L  V+  L+P PG  +LDA    GG   +          +IA
Sbjct: 97  ATLEYMMGYYVPQDAASMLPPVV--LDPKPGDRVLDACAAPGGKTTHLAQLMDNEGTLIA 154

Query: 64  LDRDPFAVSCGQETMRDYK-EQFSLFQATFSQLQDYVPDKGVDGVVFD 110
           +D DP  +   +  +           +     L     D   D ++ D
Sbjct: 155 IDVDPDRMRALKSNLARCGVANAVALRMNALDLPS--TDWEFDRILLD 200


>gi|58267256|ref|XP_570784.1| hypothetical protein [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|57227018|gb|AAW43477.1| conserved hypothetical protein [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 427

 Score = 38.6 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 2/67 (2%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96
           VI+DA  G GG + +F K    VIA+D D   +   +     +   ++       +++  
Sbjct: 250 VIVDAFCGVGGNAIAFAKTCERVIAIDNDITRLKLARHNALHHGVADRIEFILGDYTEFA 309

Query: 97  DYVPDKG 103
               +K 
Sbjct: 310 RSFAEKN 316


>gi|134111829|ref|XP_775450.1| hypothetical protein CNBE1650 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50258109|gb|EAL20803.1| hypothetical protein CNBE1650 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 427

 Score = 38.6 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 2/67 (2%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96
           VI+DA  G GG + +F K    VIA+D D   +   +     +   ++       +++  
Sbjct: 250 VIVDAFCGVGGNAIAFAKTCERVIAIDNDITRLKLARHNALHHGVADRIEFILGDYTEFA 309

Query: 97  DYVPDKG 103
               +K 
Sbjct: 310 RSFAEKN 316


>gi|307132808|ref|YP_003884824.1| Ribosomal RNA small subunit methyltransferase B [Dickeya dadantii
           3937]
 gi|306530337|gb|ADN00268.1| Ribosomal RNA small subunit methyltransferase B [Dickeya dadantii
           3937]
          Length = 431

 Score = 38.6 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 34/89 (38%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQF 85
            I  L P   + ILD     GG +    +   +  V+A+D D   +   +E ++   +  
Sbjct: 238 CIHWLAPQDHEEILDLCAAPGGKTTHILEAAPHAHVLAVDVDEQRLKRVRENLQRLGQHA 297

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            +         ++  DK  D ++ D   S
Sbjct: 298 EVKCGDGRTPTEWCGDKLFDRILLDAPCS 326


>gi|13541750|ref|NP_111438.1| precorrin-6Y methylase [Thermoplasma volcanium GSS1]
 gi|48428139|sp|Q97A64|CBIT_THEVO RecName: Full=Probable cobalt-precorrin-6Y C(15)-methyltransferase
           [decarboxylating]
 gi|14325163|dbj|BAB60088.1| precorrin-8w decarboxylase [Thermoplasma volcanium GSS1]
          Length = 201

 Score = 38.6 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 30/91 (32%), Gaps = 16/91 (17%)

Query: 28  VIALLNPAPGKVILD-ATFGAGGYSRS-----FCKMGSNVIALDRDPFAVSCGQ---ETM 78
            +  L    G   LD  T G G  S +            +IALDRD  A+   +   + +
Sbjct: 36  SLNRLGVRNGGHFLDIGT-GTG--SVAVDMSRLAGPNGKIIALDRDEKAIKLARINLDRL 92

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVDGVVF 109
             YK      Q   +    Y P    D +  
Sbjct: 93  SPYKN----IQLVLADAYAYSPADSFDAIFI 119


>gi|284031466|ref|YP_003381397.1| type 11 methyltransferase [Kribbella flavida DSM 17836]
 gi|283810759|gb|ADB32598.1| Methyltransferase type 11 [Kribbella flavida DSM 17836]
          Length = 251

 Score = 38.6 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 36/97 (37%), Gaps = 3/97 (3%)

Query: 30  ALLNPAP-GKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLF 88
            +L+  P    +LD + G G  +      G  V+A D     V    E   ++       
Sbjct: 31  DVLSLLPSNAHVLDCSCGTGQLAVGLAGRGLQVVATDASEAMVRRTAELSAEFGASVRAV 90

Query: 89  QATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCG-DRG 124
           +A + +L D+  D   D V F +G S         RG
Sbjct: 91  RANWEELPDHFEDDTFDMV-FCVGNSLHHAMGATGRG 126


>gi|312837869|gb|ADR01068.1| NocQ [Nocardia sp. ATCC 202099]
          Length = 207

 Score = 38.6 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 27/93 (29%), Gaps = 4/93 (4%)

Query: 30  ALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQ 89
             L P      LD   G GG S    + G +V   D  P A+   ++   D        +
Sbjct: 49  DRLAP---GRALDLGCGTGGKSIYLAEHGWSVTGADIAPEALRRARKRAGDAGVDVEFVE 105

Query: 90  ATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGD 122
                +         D  + D G S    D   
Sbjct: 106 CDLVDIPAGALGGPYD-FLLDFGCSHSLRDEAK 137


>gi|14521110|ref|NP_126585.1| sun protein (fmu protein) [Pyrococcus abyssi GE5]
 gi|5458327|emb|CAB49816.1| Sun/NOL1/NOP nucleolar protein [Pyrococcus abyssi GE5]
          Length = 450

 Score = 38.6 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 41/96 (42%), Gaps = 15/96 (15%)

Query: 28  VIALLNPAPGKVILDA-------TFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRD 80
           V  +LNP PG+ +LD        TF    ++ +  +    ++A+D     +   +E M+ 
Sbjct: 253 VAHVLNPEPGERVLDLAAAPGSKTF----HAAALMENKGEIVAVDYSYDRLMKMKERMKR 308

Query: 81  YK-EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSS 115
              +   L     +  Q ++  +G + ++ D   SS
Sbjct: 309 LGVKNVKLVH---ADGQSFIDREGFEKIILDAPCSS 341


>gi|312173998|emb|CBX82251.1| Ribosomal RNA small subunit methyltransferase B [Erwinia amylovora
           ATCC BAA-2158]
          Length = 429

 Score = 38.6 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85
            +ALL P  G+ ILD     GG +    +     NV+A+D D   ++   E ++    Q 
Sbjct: 238 CVALLAPQNGEQILDLCAAPGGKTTHILEAAPQANVLAVDVDAQRLTRITENLQRLNMQA 297

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            +          +  D   D ++ D   S
Sbjct: 298 EVKLGDGRTPAAWCGDTLFDRILLDAPCS 326


>gi|292489815|ref|YP_003532705.1| ribosomal RNA small subunit methyltransferase B [Erwinia amylovora
           CFBP1430]
 gi|291555252|emb|CBA23523.1| Ribosomal RNA small subunit methyltransferase B [Erwinia amylovora
           CFBP1430]
          Length = 456

 Score = 38.6 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85
            +ALL P  G+ ILD     GG +    +     NV+A+D D   ++   E ++    Q 
Sbjct: 265 CVALLAPQNGEQILDLCAAPGGKTTHILEAAPQANVLAVDVDAQRLTRITENLQRLNMQA 324

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            +          +  D   D ++ D   S
Sbjct: 325 EVKLGDGRTPAAWCGDTLFDRILLDAPCS 353


>gi|292900857|ref|YP_003540226.1| ribosomal RNA small subunit methyltransferase B [Erwinia amylovora
           ATCC 49946]
 gi|291200705|emb|CBJ47838.1| ribosomal RNA small subunit methyltransferase B [Erwinia amylovora
           ATCC 49946]
          Length = 429

 Score = 38.6 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85
            +ALL P  G+ ILD     GG +    +     NV+A+D D   ++   E ++    Q 
Sbjct: 238 CVALLAPQNGEQILDLCAAPGGKTTHILEAAPQANVLAVDVDAQRLTRITENLQRLNMQA 297

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            +          +  D   D ++ D   S
Sbjct: 298 EVKLGDGRTPAAWCGDTLFDRILLDAPCS 326


>gi|310657947|ref|YP_003935668.1| methyltransferase [Clostridium sticklandii DSM 519]
 gi|308824725|emb|CBH20763.1| putative methyltransferase [Clostridium sticklandii]
          Length = 250

 Score = 38.6 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 51  SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFD 110
           ++    MG  V+ +D     +    E ++DY+++  L +    +L        +D ++  
Sbjct: 52  TKHLLDMGYEVVGIDISEQMLELAHEKLKDYEDKVILMEQDIRELD--FEIYEIDCILAV 109

Query: 111 LG 112
             
Sbjct: 110 ND 111


>gi|237729748|ref|ZP_04560229.1| 23S rRNA 5-methyluridine methyltransferase [Citrobacter sp. 30_2]
 gi|226908354|gb|EEH94272.1| 23S rRNA 5-methyluridine methyltransferase [Citrobacter sp. 30_2]
          Length = 432

 Score = 38.6 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 36/90 (40%), Gaps = 3/90 (3%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET-MRDYK 82
           ++ + +  L+  P   +LD   G G ++       ++V+ ++  P  V  G+E  + +  
Sbjct: 274 MVARALEWLDVQPEDRVLDLFCGMGNFTLPLATRAASVVGVEGVPALVEKGRENALNNGL 333

Query: 83  EQFSLFQATFSQ--LQDYVPDKGVDGVVFD 110
              + F     +   +      G D V+ D
Sbjct: 334 HNVTFFHENLEEDVTRQPWAKNGFDKVLLD 363


>gi|193215887|ref|YP_001997086.1| type 12 methyltransferase [Chloroherpeton thalassium ATCC 35110]
 gi|193089364|gb|ACF14639.1| Methyltransferase type 12 [Chloroherpeton thalassium ATCC 35110]
          Length = 273

 Score = 38.6 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 5/97 (5%)

Query: 29  IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLF 88
           I+ L     K +LD + G G +S    K G  V+++D     ++   E  R +       
Sbjct: 52  ISALKERGVKKVLDVSTGTGFHSVRLLKAGFEVVSVDGSADMLAKAFENARKHGYILRTV 111

Query: 89  QATFSQL-QDYVPDKGVDGVVFDLGVS-SMQIDCGDR 123
            A +  L +D   +   D ++  LG S +      DR
Sbjct: 112 LADWRFLNRDVHGEY--DAIIC-LGNSFTHLFKERDR 145


>gi|148642298|ref|YP_001272811.1| precorrin-6B methylase, CbiT [Methanobrevibacter smithii ATCC
           35061]
 gi|222444531|ref|ZP_03607046.1| hypothetical protein METSMIALI_00143 [Methanobrevibacter smithii
           DSM 2375]
 gi|261350930|ref|ZP_05976347.1| putative cobalt-precorrin-6Y C(15)-methyltransferase
           [Methanobrevibacter smithii DSM 2374]
 gi|166225722|sp|A5UJR5|CBIT_METS3 RecName: Full=Probable cobalt-precorrin-6Y C(15)-methyltransferase
           [decarboxylating]
 gi|148551315|gb|ABQ86443.1| precorrin-6B methylase, CbiT [Methanobrevibacter smithii ATCC
           35061]
 gi|222434096|gb|EEE41261.1| hypothetical protein METSMIALI_00143 [Methanobrevibacter smithii
           DSM 2375]
 gi|288860268|gb|EFC92566.1| putative cobalt-precorrin-6Y C(15)-methyltransferase
           [Methanobrevibacter smithii DSM 2374]
          Length = 187

 Score = 38.6 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 36/90 (40%), Gaps = 6/90 (6%)

Query: 33  NPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY--KEQFSLFQA 90
              P   ++D   G GG +  F +    V ++D +P A+S  ++ +  +   +   L   
Sbjct: 30  AVTPNDEVVDVGCGTGGITCEFAQRAKKVTSIDTNPDAISVTKQNLEKFNLGDNVELIND 89

Query: 91  TFSQLQDYVPDKGVDGVVFDLGVSSMQIDC 120
           + S     + +  +      +G S  +++ 
Sbjct: 90  SGSNALKNIDNMDI----AVVGGSGRELED 115


>gi|149005767|ref|ZP_01829506.1| hypothetical protein CGSSp18BS74_09380 [Streptococcus pneumoniae
           SP18-BS74]
 gi|169834297|ref|YP_001694128.1| SAM-dependent methyltransferase [Streptococcus pneumoniae
           Hungary19A-6]
 gi|307126848|ref|YP_003878879.1| SAM-dependent methyltransferase [Streptococcus pneumoniae 670-6B]
 gi|147762707|gb|EDK69667.1| hypothetical protein CGSSp18BS74_09380 [Streptococcus pneumoniae
           SP18-BS74]
 gi|168996799|gb|ACA37411.1| SAM-dependent methyltransferase [Streptococcus pneumoniae
           Hungary19A-6]
 gi|301793835|emb|CBW36228.1| putative rRNA methylase [Streptococcus pneumoniae INV104]
 gi|306483910|gb|ADM90779.1| SAM-dependent methyltransferase [Streptococcus pneumoniae 670-6B]
 gi|332077081|gb|EGI87543.1| rRNA methylase (SAM-dependent methyltransferase superfamily)
           [Streptococcus pneumoniae GA17545]
 gi|332204671|gb|EGJ18736.1| rRNA methylase (SAM-dependent methyltransferase superfamily)
           [Streptococcus pneumoniae GA47901]
          Length = 185

 Score = 38.6 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 10/91 (10%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82
           L +V+         V++DAT G  G+ +    K+   V A D    A+   QE +     
Sbjct: 12  LAEVV----TKED-VVVDATMGN-GHDTLFLAKLAKQVYAFDIQKQALEKTQERLHQADL 65

Query: 83  EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
               L       L  +V      G+ F+LG 
Sbjct: 66  TNAQLILQGHETLDQFVIKAKA-GI-FNLGY 94


>gi|270004358|gb|EFA00806.1| hypothetical protein TcasGA2_TC003693 [Tribolium castaneum]
          Length = 734

 Score = 38.6 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96
           +I+D   GAGG +  F      VIA+D DP  +   +     Y   ++       F  L 
Sbjct: 577 LIVDGFCGAGGNAIQFAFTCKRVIAIDIDPKKIELARNNAEVYGVADKIDFIVGDFFHLA 636


>gi|226224265|ref|YP_002758372.1| hypothetical protein Lm4b_01675 [Listeria monocytogenes Clip81459]
 gi|225876727|emb|CAS05436.1| unnamed protein product [Listeria monocytogenes serotype 4b str.
           CLIP 80459]
          Length = 192

 Score = 38.6 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 8/86 (9%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK--EQFSL 87
             PG  ++D T G  G+             +V+  D    AV   +  + +     Q  L
Sbjct: 18  VRPGDYVIDTTCGN-GHDTLLLAELVGINGHVLGFDIQQMAVDATKARLENAGVSSQVEL 76

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGV 113
             A+ +++  Y   + V   +F+LG 
Sbjct: 77  VCASHARIPAY-TSRPVRAAIFNLGY 101


>gi|189235563|ref|XP_969535.2| PREDICTED: similar to prip interacting protein, pimt [Tribolium
           castaneum]
          Length = 797

 Score = 38.6 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96
           +I+D   GAGG +  F      VIA+D DP  +   +     Y   ++       F  L 
Sbjct: 640 LIVDGFCGAGGNAIQFAFTCKRVIAIDIDPKKIELARNNAEVYGVADKIDFIVGDFFHLA 699


>gi|77405777|ref|ZP_00782862.1| conserved hypothetical protein [Streptococcus agalactiae H36B]
 gi|77175634|gb|EAO78418.1| conserved hypothetical protein [Streptococcus agalactiae H36B]
          Length = 188

 Score = 38.6 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 33/90 (36%), Gaps = 7/90 (7%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-E 83
           L +VI         + LDAT G G  +    K    V A D    A++  +  + +    
Sbjct: 13  LAEVID-----KEAITLDATMGNGNDTVFLAKSSKKVYAFDIQEEAIAKTKAKLTEQGIS 67

Query: 84  QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
              L       L+ YV     + + F+LG 
Sbjct: 68  NAELILDGHENLEQYVHTPLREAI-FNLGY 96


>gi|301169342|emb|CBW28941.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Haemophilus
           influenzae 10810]
          Length = 451

 Score = 38.6 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 7/91 (7%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88
           LL P   + ILDA    GG +    ++    NV+ALD +   +   +E +    +Q  + 
Sbjct: 253 LLEPKNEEWILDACAAPGGKTTHILELAPQANVVALDVESHRLKRVEENLERLNQQAIVV 312

Query: 89  QATFSQLQDYVPDKG-----VDGVVFDLGVS 114
               S+  +++ + G      D ++ D   S
Sbjct: 313 CGDASKPDEWLAEIGKSAAKFDRILLDSPCS 343


>gi|53729217|ref|ZP_00348347.1| COG0144: tRNA and rRNA cytosine-C5-methylases [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126209024|ref|YP_001054249.1| ribosomal RNA small subunit methyltransferase B [Actinobacillus
           pleuropneumoniae L20]
 gi|165976991|ref|YP_001652584.1| SUN protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
 gi|190150891|ref|YP_001969416.1| ribosomal RNA small subunit methyltransferase B [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|303252922|ref|ZP_07339079.1| SUN protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
 gi|307248606|ref|ZP_07530620.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|307250839|ref|ZP_07532767.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|307255464|ref|ZP_07537270.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307257633|ref|ZP_07539392.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|307259916|ref|ZP_07541629.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307264244|ref|ZP_07545834.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|126097816|gb|ABN74644.1| ribosomal RNA small subunit methyltransferase B [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|165877092|gb|ABY70140.1| SUN protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
 gi|189916022|gb|ACE62274.1| ribosomal RNA small subunit methyltransferase B [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|302648230|gb|EFL78429.1| SUN protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
 gi|306854817|gb|EFM87006.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306857089|gb|EFM89217.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306861506|gb|EFM93494.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306863808|gb|EFM95732.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306865944|gb|EFM97819.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306870415|gb|EFN02169.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 432

 Score = 38.6 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 6/83 (7%)

Query: 30  ALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSL 87
           ALL    G++ILDA    GG +    +      VIALD +   +   +E +    +  ++
Sbjct: 240 ALLEAQNGELILDACAAPGGKTTHILEAAPQAKVIALDIEESRLKRVRENLARLGQTATV 299

Query: 88  FQATFSQLQDYVPDKGVDGVVFD 110
                S+  +++     DGV+FD
Sbjct: 300 ICGDASKPAEWLD----DGVMFD 318


>gi|302541207|ref|ZP_07293549.1| putative methyltransferase [Streptomyces hygroscopicus ATCC 53653]
 gi|302458825|gb|EFL21918.1| putative methyltransferase [Streptomyces himastatinicus ATCC 53653]
          Length = 388

 Score = 38.6 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 33/76 (43%)

Query: 29  IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLF 88
           +A L P  G ++ D   G+G  +      G+ VIA+DRD  A    +   R +  Q  + 
Sbjct: 234 LARLGPRVGDLVWDIGAGSGAAAVETAGFGAAVIAVDRDRDACERAETLARRFGVQLQVV 293

Query: 89  QATFSQLQDYVPDKGV 104
                 + + +P+  V
Sbjct: 294 HGAAPDVLEDLPEPDV 309


>gi|89075352|ref|ZP_01161774.1| ribosomal protein L11 methyltransferase [Photobacterium sp. SKA34]
 gi|89048901|gb|EAR54470.1| ribosomal protein L11 methyltransferase [Photobacterium sp. SKA34]
          Length = 294

 Score = 38.6 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 15/89 (16%)

Query: 28  VIALLNPAP--GKVILDATFGAGGYSRSF--CKMGS-NVIALDRDPFAVSCGQETMRDYK 82
            +  L+     GK ++D  FG G    +    K+G+  VI +D DP A+   ++      
Sbjct: 149 CLEWLDGQDLTGKTVID--FGCGSGILAIAALKLGAEKVIGIDIDPQAILASRDNAER-- 204

Query: 83  EQFSLFQATFSQLQDYVPDKGVDGVVFDL 111
                       L+ Y+P     G+  D+
Sbjct: 205 ------NGVSDNLELYLPQDQPQGIQADI 227


>gi|307246481|ref|ZP_07528553.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306852544|gb|EFM84777.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
          Length = 432

 Score = 38.6 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 6/83 (7%)

Query: 30  ALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSL 87
           ALL    G++ILDA    GG +    +      VIALD +   +   +E +    +  ++
Sbjct: 240 ALLEAQNGELILDACAAPGGKTTHILEAAPQAKVIALDIEESRLKRVRENLARLGQTATV 299

Query: 88  FQATFSQLQDYVPDKGVDGVVFD 110
                S+  +++     DGV+FD
Sbjct: 300 ICGDASKPAEWLD----DGVMFD 318


>gi|15900553|ref|NP_345157.1| hypothetical protein SP_0652 [Streptococcus pneumoniae TIGR4]
 gi|111657722|ref|ZP_01408447.1| hypothetical protein SpneT_02001094 [Streptococcus pneumoniae
           TIGR4]
 gi|14972124|gb|AAK74797.1| conserved hypothetical protein [Streptococcus pneumoniae TIGR4]
          Length = 185

 Score = 38.6 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 10/91 (10%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82
           L +V+         V++DAT G  G+ +    K+   V A D    A+   QE +     
Sbjct: 12  LAEVV----TKED-VVVDATMGN-GHDTLFLAKLAKQVYAFDIQKQALEKTQERLHQADL 65

Query: 83  EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
               L       L  +V      G+ F+LG 
Sbjct: 66  TNAQLILQGHETLDQFVIKAKA-GI-FNLGY 94


>gi|269103647|ref|ZP_06156344.1| ribosomal protein L11 methyltransferase [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268163545|gb|EEZ42041.1| ribosomal protein L11 methyltransferase [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 294

 Score = 38.6 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 15/89 (16%)

Query: 28  VIALLNPAP--GKVILDATFGAGGYSRSF--CKMGS-NVIALDRDPFAVSCGQETMRDYK 82
            +  L+     GK ++D  FG G    +    K+G+  VI +D DP A+   ++      
Sbjct: 149 CLEWLDGQDLTGKTVID--FGCGSGILAIAALKLGAAKVIGIDIDPQAILASRDNAER-- 204

Query: 83  EQFSLFQATFSQLQDYVPDKGVDGVVFDL 111
                       L+ Y+P    +G+  D+
Sbjct: 205 ------NGVADNLELYLPQDQPEGIQADV 227


>gi|212225090|ref|YP_002308326.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus onnurineus NA1]
 gi|212010047|gb|ACJ17429.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus onnurineus NA1]
          Length = 442

 Score = 38.6 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 4/81 (4%)

Query: 34  PAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQFSLFQ 89
           P PG+ ++D     GG   +          + A D D   +   +E +R    E     +
Sbjct: 248 PEPGETVVDLAAAPGGKTAHMAELMNNTGKIYAFDIDSARIKRMKEVLRRAGVEIAETIK 307

Query: 90  ATFSQLQDYVPDKGVDGVVFD 110
           A   +  + + +K  D V+ D
Sbjct: 308 ADGRKAPEILGEKIADRVLLD 328


>gi|303249608|ref|ZP_07335814.1| SUN protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|307253218|ref|ZP_07535093.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|302651541|gb|EFL81691.1| SUN protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|306859306|gb|EFM91344.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 432

 Score = 38.6 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 6/83 (7%)

Query: 30  ALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSL 87
           ALL    G++ILDA    GG +    +      VIALD +   +   +E +    +  ++
Sbjct: 240 ALLEAQNGELILDACAAPGGKTTHILEAAPQAKVIALDIEESRLKRVRENLARLGQTATV 299

Query: 88  FQATFSQLQDYVPDKGVDGVVFD 110
                S+  +++     DGV+FD
Sbjct: 300 ICGDASKPAEWLD----DGVMFD 318


>gi|157145102|ref|YP_001452421.1| hypothetical protein CKO_00833 [Citrobacter koseri ATCC BAA-895]
 gi|157082307|gb|ABV11985.1| hypothetical protein CKO_00833 [Citrobacter koseri ATCC BAA-895]
          Length = 214

 Score = 38.6 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 40 ILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88
          ++D   G G +S           V A+D DP  ++  +E + +YK++   F
Sbjct: 9  VVDLACGPGSFSMRLLNRFPAIRVTAIDLDPLLLTLAKEALSEYKDRIQFF 59


>gi|329121754|ref|ZP_08250371.1| 23S rRNA (uracil-5-)-methyltransferase [Dialister micraerophilus
           DSM 19965]
 gi|327468224|gb|EGF13710.1| 23S rRNA (uracil-5-)-methyltransferase [Dialister micraerophilus
           DSM 19965]
          Length = 648

 Score = 38.6 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 36/84 (42%), Gaps = 2/84 (2%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83
           L EK +   N +  + ++DA  G G  S    +   +VI ++    A+   +E  +  + 
Sbjct: 293 LYEKALDFANLSGDETVIDAYCGTGTISLYLAQKAKHVIGIEIIKDAIENAKENAK--RN 350

Query: 84  QFSLFQATFSQLQDYVPDKGVDGV 107
           +    +   + +  Y+P+    G+
Sbjct: 351 KIKNVEFHAADVAKYLPELAKKGI 374


>gi|154279200|ref|XP_001540413.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150412356|gb|EDN07743.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 259

 Score = 38.6 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 45/108 (41%)

Query: 1   MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN 60
           +  K     S+  +      VP L  KV+  LNP P   +LD   G G ++ SF     +
Sbjct: 6   VSDKRKDYWSAEAYQESAAFVPKLAHKVLQYLNPQPTDRVLDVGCGDGKFTSSFIPHIKS 65

Query: 61  VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVV 108
           V+ +D  P  +S  ++     K  F +    +  L+  + +   D VV
Sbjct: 66  VLGVDASPSMISSAKQHYGVPKADFRVVDCRYLDLEQDILNGAWDKVV 113


>gi|308807909|ref|XP_003081265.1| Fmu (ISS) [Ostreococcus tauri]
 gi|116059727|emb|CAL55434.1| Fmu (ISS) [Ostreococcus tauri]
          Length = 276

 Score = 38.6 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 7/92 (7%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQETMRDYKEQ- 84
           ++A L    G+ +LDA  G GG + +         V   D D   ++  +        + 
Sbjct: 75  IVAALEAKAGERVLDACAGNGGKTLAIAAEMKFGEVCVFDIDRRRLAHLEANAERAGSRD 134

Query: 85  -FSLFQATFSQLQDYVPDKGVDGVVFDLGVSS 115
             +  Q T   LQD +  +  D V+ D   SS
Sbjct: 135 MVTTVQGT--SLQD-LAPQSFDAVLVDAPCSS 163


>gi|262040744|ref|ZP_06013976.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
          rhinoscleromatis ATCC 13884]
 gi|259041910|gb|EEW42949.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
          rhinoscleromatis ATCC 13884]
          Length = 214

 Score = 38.6 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 40 ILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88
          ++D   G G +S           V A+D DP  ++  +E + +YK++   F
Sbjct: 9  VVDLACGPGSFSMRLLNRFPAIRVTAIDLDPLLLTLAKEALSEYKDRIQFF 59


>gi|148989023|ref|ZP_01820423.1| rRNA methylase, putative [Streptococcus pneumoniae SP6-BS73]
 gi|147925520|gb|EDK76597.1| rRNA methylase, putative [Streptococcus pneumoniae SP6-BS73]
          Length = 185

 Score = 38.6 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 10/91 (10%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82
           L +V+         V++DAT G  G+ +    K+   V A D    A+   QE +     
Sbjct: 12  LAEVV----TKED-VVVDATMGN-GHDTLFLAKLAKQVYAFDIQKQALKKTQERLHQAGL 65

Query: 83  EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
               L       L  +V      G+ F+LG 
Sbjct: 66  TNAQLILQGHETLDQFVTKAKA-GI-FNLGY 94


>gi|90581289|ref|ZP_01237086.1| ribosomal protein L11 methyltransferase [Vibrio angustum S14]
 gi|90437528|gb|EAS62722.1| ribosomal protein L11 methyltransferase [Vibrio angustum S14]
          Length = 294

 Score = 38.6 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 15/89 (16%)

Query: 28  VIALLNPAP--GKVILDATFGAGGYSRSF--CKMGS-NVIALDRDPFAVSCGQETMRDYK 82
            +  L+     GK ++D  FG G    +    K+G+  VI +D DP A+   ++      
Sbjct: 149 CLEWLDSQDLTGKTVID--FGCGSGILAIAALKLGAAKVIGIDIDPQAILASRDNAER-- 204

Query: 83  EQFSLFQATFSQLQDYVPDKGVDGVVFDL 111
                       L+ Y+P     G+  D+
Sbjct: 205 ------NGVSDNLELYLPQDQPQGIQADV 227


>gi|83312817|ref|YP_423081.1| dimethyladenosine transferase [Magnetospirillum magneticum AMB-1]
 gi|119365030|sp|Q2W0V3|RSMA_MAGSA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
          AltName: Full=16S rRNA
          (adenine(1518)-N(6)/adenine(1519)-N(6))-
          dimethyltransferase; AltName: Full=16S rRNA
          dimethyladenosine transferase; AltName: Full=16S rRNA
          dimethylase; AltName: Full=S-adenosylmethionine-6-N',
          N'-adenosyl(rRNA) dimethyltransferase
 gi|82947658|dbj|BAE52522.1| Dimethyladenosine transferase [Magnetospirillum magneticum AMB-1]
          Length = 281

 Score = 38.6 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 46 GAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYKEQFSL 87
          G GG +R+    G+  VIA++RD  A++   E    Y  +  +
Sbjct: 54 GPGGLTRALLDAGARQVIAIERDDRAIAIQNEIAEAYPGRLEI 96


>gi|313199965|ref|YP_004038623.1| sun protein [Methylovorus sp. MP688]
 gi|312439281|gb|ADQ83387.1| sun protein [Methylovorus sp. MP688]
          Length = 427

 Score = 38.6 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSLFQ 89
           LL+ APG  +LDA    GG +    ++   +++A+D D   +   +E ++  K +  L  
Sbjct: 238 LLDLAPGMRVLDACCAPGGKTGHILELADVDLVAMDSDAGRLRRTEENLQRLKLKAQLVT 297

Query: 90  ATFSQLQDYVPDKGVDGVVFDL 111
              +    +   +  D ++ D+
Sbjct: 298 GDAADASGWWDSRPFDRILADV 319


>gi|307288671|ref|ZP_07568652.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0109]
 gi|306500425|gb|EFM69761.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0109]
 gi|315165278|gb|EFU09295.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX1302]
          Length = 456

 Score = 38.6 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 32/98 (32%), Gaps = 17/98 (17%)

Query: 23  VLLEKVIALLNPAPGKVILD-----ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77
           VL  + I  L+  P + ++D      T G      +  K    V  +D  P A+   +  
Sbjct: 297 VLYNEGIKALDLQPNETVVDAYCGVGTIG-----LNLAKQAHQVRGMDTIPAAIDDARFN 351

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFD 110
            +      +         +D +P         D +V D
Sbjct: 352 AKRLG--VTNTHYAVGTAEDLLPKWFKEGFKPDAIVVD 387


>gi|291532848|emb|CBL05961.1| Predicted S-adenosylmethionine-dependent methyltransferase involved
           in cell envelope biogenesis [Megamonas hypermegale
           ART12/1]
          Length = 196

 Score = 38.6 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 11/89 (12%)

Query: 35  APGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKE-------Q 84
              K+I+DAT G G  +    +     + + A D    A+   +  +   K+        
Sbjct: 20  NEAKIIVDATAGNGNDTLFLAQNTLNNAQIYAFDIQKEAIENTKALLIKNKDNINLPLEN 79

Query: 85  FSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
            S    +   + +Y+    +D  +F+LG 
Sbjct: 80  ISFIHDSHEHIDNYI-QTKIDIAIFNLGY 107


>gi|196009009|ref|XP_002114370.1| hypothetical protein TRIADDRAFT_58107 [Trichoplax adhaerens]
 gi|190583389|gb|EDV23460.1| hypothetical protein TRIADDRAFT_58107 [Trichoplax adhaerens]
          Length = 725

 Score = 38.6 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 2/68 (2%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96
           +I+DA  G GG    F K   +VIA+D DP  + C +   + Y    +       F QL 
Sbjct: 564 IIIDAFCGVGGNCIQFAKTCDHVIAIDIDPNKIKCARHNAKIYNVEHKIEFIVGDFLQLA 623

Query: 97  DYVPDKGV 104
             +    V
Sbjct: 624 PSLKADVV 631


>gi|134302402|ref|YP_001122372.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis
           subsp. tularensis WY96-3418]
 gi|134050179|gb|ABO47250.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Francisella tularensis
           subsp. tularensis WY96-3418]
          Length = 449

 Score = 38.6 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 55/162 (33%), Gaps = 24/162 (14%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83
           ++++ I LL+ +    I+D   G G ++    +    VI ++ +   V   +ET  +   
Sbjct: 289 MIKRAIELLDISENDSIIDLFCGLGNFTLPISQHAKTVIGVEGELTMVKRAKETADN--N 346

Query: 84  QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGIS 143
             +      + L +                 S +       F + K     M +      
Sbjct: 347 NITNVNFYAANLFE-----------------SFEDKEWFNNFEYNK-----MLLDPPRAG 384

Query: 144 ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           A +V N     ++ RI+ +  +    +R A  +V  +     
Sbjct: 385 AQEVCNNIEKFNVKRIVYVSCDTAALARDAGILVNTKGYKLI 426


>gi|146312878|ref|YP_001177952.1| 23S rRNA 5-methyluridine methyltransferase [Enterobacter sp. 638]
 gi|226725379|sp|A4WDX1|RUMA_ENT38 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|145319754|gb|ABP61901.1| 23S rRNA m(5)U-1939 methyltransferase [Enterobacter sp. 638]
          Length = 431

 Score = 38.6 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 3/90 (3%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETM-RDYK 82
           ++ K I  L+  P   +LD   G G ++    +  ++V+ ++     V  GQ+    +  
Sbjct: 274 MVAKAIEWLDVQPDDRVLDLFCGMGNFTLPLAQRAASVVGVEGVNALVEKGQQNAHHNAL 333

Query: 83  EQFSLFQATFSQ--LQDYVPDKGVDGVVFD 110
           +  + F     +   Q      G D V+ D
Sbjct: 334 DNVTFFHENLEEDVTQQPWAQHGFDKVLLD 363


>gi|30684861|ref|NP_683312.2| methylase-related [Arabidopsis thaliana]
 gi|26983794|gb|AAN86149.1| unknown protein [Arabidopsis thaliana]
 gi|332191331|gb|AEE29452.1| S-adenosyl-L-methionine-dependent methyltransferase
           domain-containing protein [Arabidopsis thaliana]
          Length = 274

 Score = 38.6 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 37/94 (39%), Gaps = 14/94 (14%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKM--------GSNVIALDRDPFAVSCGQETMRDY---- 81
              G  ++DAT G G  + +  KM        G  V A+D    A+      +       
Sbjct: 95  IQKGDTVIDATCGNGNDTLAMLKMVMHDSVGCGGYVYAMDIQKDAIESTSSLLDQAVGSK 154

Query: 82  -KEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGV 113
            KE   LF    S++ + VP+   V  V F+LG 
Sbjct: 155 EKECVKLFNLCHSKMGEIVPENARVRMVAFNLGY 188


>gi|319639269|ref|ZP_07994020.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Neisseria mucosa C102]
 gi|317399453|gb|EFV80123.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Neisseria mucosa C102]
          Length = 441

 Score = 38.6 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 4/92 (4%)

Query: 23  VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQE--TMRD 80
           V++ + + LLNP  G+ I D   G G +S    K G++V+ ++   + V   +E   +  
Sbjct: 281 VMVARAVRLLNPQKGERIADLFCGLGNFSLPLAKSGASVVGIEGADYLVDRARENARLNR 340

Query: 81  YKEQFSL-FQATFSQLQDYVPDKG-VDGVVFD 110
             E  +      F   +  V   G  D ++ D
Sbjct: 341 CAENMTFSVADLFDTDEKTVESWGKFDKMLLD 372


>gi|312878905|ref|ZP_07738705.1| precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE
           subunit [Aminomonas paucivorans DSM 12260]
 gi|310782196|gb|EFQ22594.1| precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE
           subunit [Aminomonas paucivorans DSM 12260]
          Length = 429

 Score = 38.6 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 4/82 (4%)

Query: 28  VIALLNPAPGKVILD-ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRD--YKEQ 84
           V+ALL P  G  IL+  T G GG +    + GS V++L+R+P A       +      +Q
Sbjct: 265 VLALLAPLEGSRILEIGT-GTGGVTAELARAGSRVVSLERNPEARDLAARHLERLGLGDQ 323

Query: 85  FSLFQATFSQLQDYVPDKGVDG 106
             L   +  +    + +    G
Sbjct: 324 VRLVAGSAPEALVDLEEPPFQG 345


>gi|94497692|ref|ZP_01304260.1| dimethyladenosine transferase [Sphingomonas sp. SKA58]
 gi|94422909|gb|EAT07942.1| dimethyladenosine transferase [Sphingomonas sp. SKA58]
          Length = 244

 Score = 38.6 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 26/66 (39%)

Query: 46  GAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD 105
           G GG +R+  + G  ++A++RD   +    E    +  Q  +      Q+          
Sbjct: 23  GPGGLTRAILRAGGRLVAVERDDRCLPALAELADAFPGQLKVIAGDAMQIDAQAEAGDGA 82

Query: 106 GVVFDL 111
            ++ +L
Sbjct: 83  HIIANL 88


>gi|20094975|ref|NP_614822.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
 gi|19888229|gb|AAM02752.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
          Length = 450

 Score = 38.6 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 39/105 (37%), Gaps = 15/105 (14%)

Query: 30  ALLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ-- 84
           A+LNP PG+V++D     GG   +          ++A+D D        E +R+  E+  
Sbjct: 252 AVLNPKPGEVVVDLCAAPGGKTTHMAQLMGGEGKIVAIDVDEVR----MERLREIAERMG 307

Query: 85  ----FSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQI--DCGDR 123
                        +  + +  +  D V+ D   S+        +R
Sbjct: 308 VLDCIETHLMDGREAPEKLGREFADAVLVDPPCSADGTIPKNPER 352


>gi|307704007|ref|ZP_07640940.1| RNA methyltransferase, TrmA family [Streptococcus mitis SK597]
 gi|307622431|gb|EFO01435.1| RNA methyltransferase, TrmA family [Streptococcus mitis SK597]
          Length = 451

 Score = 38.6 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/93 (16%), Positives = 30/93 (32%), Gaps = 12/93 (12%)

Query: 23  VLLEKVIALLNPAPGKVILD-----ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77
           VL  + +  L+      ++D      T G      +F K    +  +D  P A+   +  
Sbjct: 291 VLYNEAVKALDVNKEDHLIDAYCGVGTIGF-----AFAKKVKTLRGMDIIPEAIEDAKRN 345

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFD 110
            +     F          ++ +P    +G   D
Sbjct: 346 AKRMG--FDNIHYEAGTAEEIIPRWYKEGYRAD 376


>gi|70991803|ref|XP_750750.1| RNA methylase family protein [Aspergillus fumigatus Af293]
 gi|66848383|gb|EAL88712.1| RNA methylase family protein, putative [Aspergillus fumigatus
           Af293]
 gi|159124312|gb|EDP49430.1| RNA methylase family protein, putative [Aspergillus fumigatus
           A1163]
          Length = 238

 Score = 38.6 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 47/103 (45%), Gaps = 13/103 (12%)

Query: 39  VILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMRDYK--EQFSLFQA-TFS 93
           +++DA  GAGG + +F + G    V A++++P  + C +   + Y   ++ + F+   FS
Sbjct: 77  ILVDAFAGAGGNTIAFARTGKWKRVYAIEKNPAVLQCAKHNAQVYGVADKITWFEGDCFS 136

Query: 94  QLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMR 136
            L++ + +     V+F     S           ++     ++R
Sbjct: 137 ILKNQLKELAPYSVIFA----SPPWGGPG----YRSDEVFNLR 171


>gi|226310774|ref|YP_002770668.1| hypothetical protein BBR47_11870 [Brevibacillus brevis NBRC 100599]
 gi|226093722|dbj|BAH42164.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 260

 Score = 38.6 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 59/192 (30%), Gaps = 31/192 (16%)

Query: 31  LLNPAPGKVILD-ATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLF 88
            LNP+P  V LD AT   GG+ +++      +V A D     ++  +  ++ +       
Sbjct: 40  WLNPSPEWVFLDVAT--GGGHLTKAIAPHVGHVFATDLTQPMLAAARNHLKSHTSNVFYV 97

Query: 89  QATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP----------LDMRMS 138
            A    L          G      +++      +   SF K             L   ++
Sbjct: 98  VADAEALPFLSESFDAVG----CRIAAHHFPNPE---SFVKEVARVLKPGGKFVLIDNIA 150

Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHA-IVK-----RRQSAPFQT----T 188
                    VN          +      +    I    +V+     R+++ P+ T    T
Sbjct: 151 AEDEKLDQFVNTLEKLRDHSHVRSYSRSEWVRWIEQEGLVESHSRIRKKTFPYATWVRRT 210

Query: 189 QDLSSLIQKTVY 200
            +    +++   
Sbjct: 211 TETEEQVEQVTA 222


>gi|332968678|gb|EGK07730.1| methyltransferase [Desmospora sp. 8437]
          Length = 250

 Score = 38.6 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 29/84 (34%), Gaps = 4/84 (4%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84
           +E     L+   G+ +LD   G G +S +   +G  V  +D     +   +E  R    +
Sbjct: 36  VEAAAEWLDLKKGESVLDLCCGTGRHSIALDDLGLKVTGIDLSSVLLQVARENSR--GRR 93

Query: 85  FSLFQATFSQLQDYVPDKGVDGVV 108
                     L     +   D V+
Sbjct: 94  IEYVHGDMRDLP--FTEGSFDAVL 115


>gi|52425949|ref|YP_089086.1| SmtA protein [Mannheimia succiniciproducens MBEL55E]
 gi|52308001|gb|AAU38501.1| SmtA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 255

 Score = 38.6 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 41/98 (41%), Gaps = 16/98 (16%)

Query: 25  LEKVIA---LLNPAP---GKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCG--- 74
           L +++    +L+  P   GK +LD   G GG+ + + ++G+  V+ +D     +      
Sbjct: 25  LNEIVEKPTMLSLLPDITGKTLLDMGCGTGGHLQMYLRLGAKRVVGIDLSASMLKQAEID 84

Query: 75  -----QETMRDYKEQFSLFQATFSQLQDYVPDKGVDGV 107
                +  ++     FSL      QL   +P+   D +
Sbjct: 85  LGKLCENRLQFSSGSFSLHHLPMEQLDQ-LPEAQFDVI 121


>gi|316933703|ref|YP_004108685.1| dimethyladenosine transferase [Rhodopseudomonas palustris DX-1]
 gi|315601417|gb|ADU43952.1| dimethyladenosine transferase [Rhodopseudomonas palustris DX-1]
          Length = 287

 Score = 38.2 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 46  GAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ 96
           G GG +R+    G+  VIA++RD  A+   +E    Y  +  +      +  
Sbjct: 57  GPGGLTRALLATGAKRVIAIERDERALGALEEIAAHYPGRLEIVSGDAMEFD 108


>gi|169610059|ref|XP_001798448.1| hypothetical protein SNOG_08123 [Phaeosphaeria nodorum SN15]
 gi|111063279|gb|EAT84399.1| hypothetical protein SNOG_08123 [Phaeosphaeria nodorum SN15]
          Length = 222

 Score = 38.2 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 7/81 (8%)

Query: 31  LLNPAPGKVILDATFGAG-GY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFS 86
           LL   PG  +LDA  GAG GY + +  + G NV A+D  P  V+  ++ +R Y   ++  
Sbjct: 68  LLGLKPGDRVLDA--GAGSGYVAMTMARHGLNVQAIDITPHHVANAKKNVRGYGLQDRIK 125

Query: 87  LFQATFSQLQDYVPDKGVDGV 107
           +  A +  L  + PD   DG+
Sbjct: 126 VDYANYHNLSQF-PDASFDGI 145


>gi|238027991|ref|YP_002912222.1| hypothetical protein bglu_1g24400 [Burkholderia glumae BGR1]
 gi|237877185|gb|ACR29518.1| Hypothetical protein bglu_1g24400 [Burkholderia glumae BGR1]
          Length = 186

 Score = 38.2 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/40 (45%), Positives = 24/40 (60%)

Query: 34 PAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSC 73
           APG  +LD   G G ++R F   G  V+ALDRDP A++ 
Sbjct: 16 VAPGGAVLDVAAGQGRHARWFASRGHPVLALDRDPAALAT 55


>gi|254490995|ref|ZP_05104176.1| ribosomal RNA small subunit methyltransferase B [Methylophaga
           thiooxidans DMS010]
 gi|224463508|gb|EEF79776.1| ribosomal RNA small subunit methyltransferase B [Methylophaga
           thiooxydans DMS010]
          Length = 406

 Score = 38.2 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 2/90 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQF 85
           V+ +L+  P + ILDA    GG S    +   +  ++ALD     +   ++ +   +   
Sbjct: 211 VVKMLDIQPDQHILDACAAPGGKSCHILEQHPDNTLVALDISAERLKQIEQNLSRLQLGA 270

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVSS 115
            L  A  S    +   +  D ++ D   S 
Sbjct: 271 QLKAADASDTDAWWDGELFDRILIDAPCSG 300


>gi|150402394|ref|YP_001329688.1| precorrin-6Y C5,15-methyltransferase subunit CbiT [Methanococcus
           maripaludis C7]
 gi|166225721|sp|A6VGG1|CBIT_METM7 RecName: Full=Probable cobalt-precorrin-6Y C(15)-methyltransferase
           [decarboxylating]
 gi|150033424|gb|ABR65537.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Methanococcus maripaludis C7]
          Length = 181

 Score = 38.2 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 6/93 (6%)

Query: 21  VPVLLEKV----IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQE 76
           VP+  E++    I  LN  P  ++LD   G+GG S    K    V A+D    A +    
Sbjct: 13  VPITKEEIRAVSIGKLNLNPEDIVLDIGCGSGGMSVEISKRSKFVYAIDNSEDAKNTTVT 72

Query: 77  TMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVF 109
            ++ +K      +      +D + +   + V  
Sbjct: 73  NLKKFK--IENCEVFLGDAKDLISEFDFNKVFI 103


>gi|311696633|gb|ADP99506.1| Fmu, rRNA SAM-dependent methyltransferase [marine bacterium HP15]
          Length = 426

 Score = 38.2 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 3/90 (3%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMRDYKEQ 84
              L++ APG+ +LDA    GG + +  +     + V+A+D     +   QE +      
Sbjct: 228 CTTLMDLAPGQRVLDACAAPGGKTCAILESCGELAEVVAIDESADRLPRVQENLDRLDLN 287

Query: 85  FSLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            +L QA  +    +   +  D ++ D+  S
Sbjct: 288 ATLKQADAAATDQWWDGEAFDRILLDVPCS 317


>gi|293374332|ref|ZP_06620659.1| conserved hypothetical protein [Turicibacter sanguinis PC909]
 gi|292646995|gb|EFF64978.1| conserved hypothetical protein [Turicibacter sanguinis PC909]
          Length = 187

 Score = 38.2 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 10/94 (10%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRD 80
           LLEK+++      G+ ++DAT G G  +    K+      V + D    A+   +  + +
Sbjct: 15  LLEKIVSA-----GETVIDATAGNGYDTLFLAKLVGESGKVFSFDVQQEAIDSTKAKLEE 69

Query: 81  YK-EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
            K E  SL       + +YV ++ +   +F+LG 
Sbjct: 70  AKLENVSLILDGHQHVLNYVTEE-ISAAIFNLGY 102


>gi|290579949|ref|YP_003484341.1| hypothetical protein SmuNN2025_0423 [Streptococcus mutans NN2025]
 gi|254996848|dbj|BAH87449.1| hypothetical protein [Streptococcus mutans NN2025]
          Length = 181

 Score = 38.2 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 7/90 (7%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-E 83
           L +V+         + +DAT G G  +     +   V A D    A+   +E + +    
Sbjct: 13  LSQVLD-----KNSIAIDATMGNGNDTVFLSHLAKKVYAFDVQEQALIKTREKLENLGFN 67

Query: 84  QFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
              L       +  YV D  +   +F+LG 
Sbjct: 68  NVQLILDGHQTIDKYV-DGPIRAAIFNLGY 96


>gi|57169000|ref|ZP_00368129.1| probable DNA methylase Cj1461 [Campylobacter coli RM2228]
 gi|57019666|gb|EAL56355.1| probable DNA methylase Cj1461 [Campylobacter coli RM2228]
          Length = 229

 Score = 38.2 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/77 (16%), Positives = 25/77 (32%), Gaps = 6/77 (7%)

Query: 51  SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQAT-FSQLQDYVPDKGVDGVVF 109
           + +         A++ D  A     E  ++      +  A  F  L   + D   D +++
Sbjct: 97  AEALSNYALKAYAIELDLNAYKIALENAKNIDTNLKVIHANTFEILPKLIEDSKEDIILY 156

Query: 110 DLGVSSMQIDCGDRGFS 126
                    D  + GFS
Sbjct: 157 L----DPPFDIRE-GFS 168


>gi|225017534|ref|ZP_03706726.1| hypothetical protein CLOSTMETH_01461 [Clostridium methylpentosum
           DSM 5476]
 gi|224949684|gb|EEG30893.1| hypothetical protein CLOSTMETH_01461 [Clostridium methylpentosum
           DSM 5476]
          Length = 184

 Score = 38.2 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 4/80 (5%)

Query: 37  GKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETM-RDYKEQFSLFQATFS 93
             V+ D T G G  +    +      V A D    AV   +  +  ++ +   L   + S
Sbjct: 19  DGVVGDFTMGNGSDTLFLAQHCCKGKVYAFDIQQQAVDNTRSRLEANWVDNAELILDSHS 78

Query: 94  QLQDYVPDKGVDGVVFDLGV 113
            L  Y+ ++ +DG +F+LG 
Sbjct: 79  NLDQYIREE-LDGGMFNLGY 97


>gi|312138483|ref|YP_004005819.1| sam dependent methyltransferase [Rhodococcus equi 103S]
 gi|311887822|emb|CBH47134.1| putative SAM dependent methyltransferase [Rhodococcus equi 103S]
          Length = 237

 Score = 38.2 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 26/78 (33%), Gaps = 3/78 (3%)

Query: 46  GAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD 105
           G G +S    K G +V A+D  P A+   +  +              + L  YV D    
Sbjct: 87  GTGDHSIELAKRGWSVTAVDSVPLAIERARAKLPVAGADVRFVLGDVTHLPAYVDDHYT- 145

Query: 106 GVVFDLGVSSMQIDCGDR 123
               D+G     +    R
Sbjct: 146 -FALDVGC-FHGLTDECR 161


>gi|251788451|ref|YP_003003172.1| 23S rRNA 5-methyluridine methyltransferase [Dickeya zeae Ech1591]
 gi|247537072|gb|ACT05693.1| RNA methyltransferase, TrmA family [Dickeya zeae Ech1591]
          Length = 444

 Score = 38.2 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 3/90 (3%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82
           ++E+ +A L+P P   +LD   G G ++    +    V+ ++     V  G+E       
Sbjct: 280 MVEQALAWLDPQPQDRVLDLFCGMGNFTLPLAERAGRVVGVEGVAALVDKGRENATRNGL 339

Query: 83  EQFSLFQATFSQ--LQDYVPDKGVDGVVFD 110
            Q + +     +   +      G D V+ D
Sbjct: 340 TQVTFYHHNLEEDVTRQPWASMGFDKVLLD 369


>gi|94310012|ref|YP_583222.1| methyltransferase type 12 [Cupriavidus metallidurans CH34]
 gi|93353864|gb|ABF07953.1| conserved hypothetical protein [Cupriavidus metallidurans CH34]
          Length = 191

 Score = 38.2 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 21/40 (52%)

Query: 34 PAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSC 73
            PG  +LD   G+G +S      G  V+A+DRD  A++ 
Sbjct: 22 IRPGGRVLDLACGSGRHSAWLAAQGFAVLAVDRDAEAIAA 61


>gi|254172289|ref|ZP_04878965.1| tRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family [Thermococcus
           sp. AM4]
 gi|214034185|gb|EEB75011.1| tRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family [Thermococcus
           sp. AM4]
          Length = 443

 Score = 38.2 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 33/83 (39%), Gaps = 4/83 (4%)

Query: 32  LNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQFSL 87
           L+P PG+ ++D     GG   +          + A D D   +   ++ +R    E   +
Sbjct: 246 LSPEPGETVVDLAAAPGGKTAHMAELMGNEGKIYAFDIDSERIKRMRQILRWAGVEIAEV 305

Query: 88  FQATFSQLQDYVPDKGVDGVVFD 110
            +    +  + + ++  D V+ D
Sbjct: 306 RKLDGRKAPEVLGEEIADRVLLD 328


>gi|170743207|ref|YP_001771862.1| dimethyladenosine transferase [Methylobacterium sp. 4-46]
 gi|168197481|gb|ACA19428.1| dimethyladenosine transferase [Methylobacterium sp. 4-46]
          Length = 285

 Score = 38.2 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 46  GAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSLFQA 90
           G GG +R+    G+  V+A++RD  A+    E    Y  + ++ QA
Sbjct: 61  GPGGLTRALLAEGAARVVAIERDERALPALAEIAAHYPGRLTVVQA 106


>gi|119469769|ref|XP_001257977.1| RNA methylase family protein, putative [Neosartorya fischeri NRRL
           181]
 gi|119406129|gb|EAW16080.1| RNA methylase family protein, putative [Neosartorya fischeri NRRL
           181]
          Length = 238

 Score = 38.2 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 5/82 (6%)

Query: 33  NPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMRDYK--EQFSLF 88
            PA   +++DA  GAGG + +F + G    V A++++P  + C +   + Y   ++ + F
Sbjct: 71  APAGRSILVDAFAGAGGNTIAFARTGKWKRVYAIEKNPAVLQCAKHNAQVYGVADKITWF 130

Query: 89  QA-TFSQLQDYVPDKGVDGVVF 109
           +   FS L+D + +     V+F
Sbjct: 131 EGDCFSILKDQLKELAPYSVIF 152


>gi|294506884|ref|YP_003570942.1| Ribosomal RNA small subunit methyltransferase B [Salinibacter ruber
           M8]
 gi|294343212|emb|CBH23990.1| Ribosomal RNA small subunit methyltransferase B [Salinibacter ruber
           M8]
          Length = 448

 Score = 38.2 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 3/49 (6%)

Query: 28  VIALLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSC 73
           V+ LL+P PG+ ++D     GG   ++ +  +    + A+DRD   +  
Sbjct: 245 VVQLLDPQPGETLIDGCAAPGGKAMHAAARMEGTGTIYAVDRDEQRLER 293


>gi|89070427|ref|ZP_01157729.1| Protein-L-isoaspartate carboxylmethyltransferase [Oceanicola
           granulosus HTCC2516]
 gi|89043993|gb|EAR50170.1| Protein-L-isoaspartate carboxylmethyltransferase [Oceanicola
           granulosus HTCC2516]
          Length = 217

 Score = 38.2 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 31/70 (44%), Gaps = 5/70 (7%)

Query: 28  VIALLNPAPGKVILDATFGAG-GYSRSFCKMGSNVIALDRDPFAV-SCGQETMRDYK-EQ 84
           ++  L+  P + +LD   G G GYS +     ++ +A   D  A     Q+T+ +   + 
Sbjct: 70  MLDALDIQPHESVLD--LGCGLGYSTAVLARLADFVAGVEDDEARAEEAQQTLSEQGVDN 127

Query: 85  FSLFQATFSQ 94
            ++     ++
Sbjct: 128 AAVIHGALAE 137


>gi|305432253|ref|ZP_07401416.1| probable site-specific DNA methyltransferase [Campylobacter coli
           JV20]
 gi|304444601|gb|EFM37251.1| probable site-specific DNA methyltransferase [Campylobacter coli
           JV20]
          Length = 229

 Score = 38.2 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 13/77 (16%), Positives = 25/77 (32%), Gaps = 6/77 (7%)

Query: 51  SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQAT-FSQLQDYVPDKGVDGVVF 109
           + +         A++ D  A     E  ++      +  A  F  L   + D   D +++
Sbjct: 97  AEALSNYALKAYAIELDLNAYKIALENAKNIDTNLKVIHANTFEILPKLIEDSKEDIILY 156

Query: 110 DLGVSSMQIDCGDRGFS 126
                    D  + GFS
Sbjct: 157 L----DPPFDIRE-GFS 168


>gi|254465054|ref|ZP_05078465.1| UbiE/COQ5 methyltransferase [Rhodobacterales bacterium Y4I]
 gi|206685962|gb|EDZ46444.1| UbiE/COQ5 methyltransferase [Rhodobacterales bacterium Y4I]
          Length = 265

 Score = 38.2 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 4/87 (4%)

Query: 28  VIALLNPAPGKVILD-ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFS 86
            +  L P PG+ ILD  T G G  +R     G++V  +D  P  +   +     +  +  
Sbjct: 34  TVQALWPRPGERILDIGT-GTGWAARLAAWRGASVTGVDIAPGMLEAAETLSAGFDPRPV 92

Query: 87  LFQATFSQLQDYVPDKGVDGVVFDLGV 113
             QA   +L     +   DGV+   GV
Sbjct: 93  FQQAAAEELP--FDNGSFDGVISTYGV 117


>gi|52220921|ref|YP_086790.1| S-adenosylmethionine-dependent methyltransferase [Agrobacterium
          tumefaciens]
 gi|222112738|ref|YP_002559291.1| S-adenosylmethionine-dependent methyltransferase protein
          [Agrobacterium radiobacter K84]
 gi|41393803|gb|AAS02151.1| probable S-adenosylmethionine-dependent methyltransferase
          [Agrobacterium tumefaciens]
 gi|221728515|gb|ACM31487.1| S-adenosylmethionine-dependent methyltransferase protein
          [Agrobacterium radiobacter K84]
          Length = 249

 Score = 38.2 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 4/60 (6%)

Query: 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83
          LL++        P   +LDA  G G  +      G+ V+ +DR P  +S   E ++    
Sbjct: 35 LLDEC----GIKPRTKVLDACCGTGRLTELLSTSGATVVGIDRSPEMLSVATERLKGKPN 90


>gi|253745520|gb|EET01398.1| Dimethyladenosine transferase [Giardia intestinalis ATCC 50581]
          Length = 319

 Score = 38.2 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 51 SRSFCKMGSNVIALDRDPFAVSCGQETMR---DYKEQFSLFQATFSQLQ 96
          + +  +   +VIA++ DP  VS  ++ +    +Y+ +F++    F+++ 
Sbjct: 47 TLALLEKAKHVIAIEIDPRMVSELKKRIAAIPEYRGKFTIIHKDFTKMP 95


>gi|254775210|ref|ZP_05216726.1| hypothetical protein MaviaA2_11141 [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 247

 Score = 38.2 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 35/97 (36%), Gaps = 9/97 (9%)

Query: 27  KVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFS 86
           + +  L P    V +D   G G ++R+     ++VIA++  P A       +        
Sbjct: 20  EAVDWLMPPDCGVAVDVGAGTGLFTRALAGRAAHVIAVE--PDARMRAV--LAHRSPAVR 75

Query: 87  LFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDR 123
           + +     +   +PD+  D V      S+       R
Sbjct: 76  VLEGRGEAIP--LPDRCADAVFV---SSAWHWMDPQR 107


>gi|206560530|ref|YP_002231295.1| putative methyltransferase [Burkholderia cenocepacia J2315]
 gi|198036572|emb|CAR52469.1| putative methyltransferase [Burkholderia cenocepacia J2315]
          Length = 200

 Score = 38.2 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 32 LNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSC 73
          L PA G  +LD   G G ++R F   G  V+ALDRDP A++ 
Sbjct: 28 LVPA-GGAVLDVAAGGGRHARWFASRGHPVVALDRDPAALAA 68


>gi|14591725|ref|NP_143813.1| nucleolar protein [Pyrococcus horikoshii OT3]
 gi|3258435|dbj|BAA31118.1| 389aa long hypothetical nucleolar protein [Pyrococcus horikoshii
           OT3]
          Length = 389

 Score = 38.2 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 11/91 (12%)

Query: 32  LNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQFSL 87
           L P    VI+D     GG   +     +    +IA+D+    +   +E ++    +   L
Sbjct: 197 LEPKEDDVIIDMAAAPGGKTTHIAQLLENKGEIIAIDKSKNRLRKMEENIKRLGVKNVKL 256

Query: 88  FQATFSQLQDYVPDKGVDGVVFD-----LGV 113
            Q    +L D       D ++ D     LGV
Sbjct: 257 VQMDARKLPDL--GIKADKILLDAPCTALGV 285


>gi|313245968|emb|CBY34942.1| unnamed protein product [Oikopleura dioica]
          Length = 394

 Score = 38.2 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 38  KVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQL 95
           ++I+D   G GG +  F      VIA+D DP  +   +     Y   ++       + ++
Sbjct: 192 ELIVDGFCGVGGNAIQFAFTCERVIAIDIDPEKIEMAKHNAAIYGVEDRIEFIVGDYFKI 251


>gi|313224250|emb|CBY20039.1| unnamed protein product [Oikopleura dioica]
          Length = 427

 Score = 38.2 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 38  KVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQL 95
           ++I+D   G GG +  F      VIA+D DP  +   +     Y   ++       + ++
Sbjct: 225 ELIVDGFCGVGGNAIQFAFTCERVIAIDIDPEKIEMAKHNAAIYGVEDRIEFIVGDYFKI 284


>gi|194705956|gb|ACF87062.1| unknown [Zea mays]
 gi|195638364|gb|ACG38650.1| S-adenosylmethionine-dependent methyltransferase [Zea mays]
          Length = 211

 Score = 38.2 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 67/207 (32%), Gaps = 34/207 (16%)

Query: 14  HHTIGDHV-PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPF 69
            +  G H+   +L       N   GKV+ D  FG G  + +         +V+ +D DP 
Sbjct: 25  QYATGPHIASRMLYMAENSFNDITGKVVAD--FGCGCGTLAVASALLDAEHVLGIDIDPQ 82

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129
           ++   QE   D +    L  +    L   +    VD VV                F  ++
Sbjct: 83  SLELAQENAADLELDIDLVWSDIKNL--NLKGVHVDTVVM----------NPP--FGTRR 128

Query: 130 SGPLDMR-MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT 188
           +G  DM  +S +   AS  V   +       +         +  A  + + R + P    
Sbjct: 129 NGA-DMEFLSMALQVASQAVYSLHKTSTREHIKKAALRGFNAISAEVLCELRYNLP---- 183

Query: 189 QDLSSLIQKTVYFSKNNRIHPATRSFQ 215
                   +T    K   I  A   ++
Sbjct: 184 --------RTYKLHKKKEIDIAVDLWR 202


>gi|256060807|ref|ZP_05450967.1| dimethyladenosine transferase [Brucella neotomae 5K33]
 gi|261324799|ref|ZP_05963996.1| dimethyladenosine transferase [Brucella neotomae 5K33]
 gi|261300779|gb|EEY04276.1| dimethyladenosine transferase [Brucella neotomae 5K33]
          Length = 276

 Score = 38.2 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 19/45 (42%)

Query: 46  GAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQA 90
           G GG +R+    G+ V A++RD   +    E    Y  +  +   
Sbjct: 56  GPGGLTRALLAQGAYVTAIERDDRCLEALTEIAAHYPGRLRIIAG 100


>gi|238920899|ref|YP_002934414.1| 23S rRNA 5-methyluridine methyltransferase [Edwardsiella ictaluri
           93-146]
 gi|259495630|sp|C5B8X6|RUMA_EDWI9 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|238870468|gb|ACR70179.1| 23S rRNA (uracil-5-)-methyltransferase RumA, putative [Edwardsiella
           ictaluri 93-146]
          Length = 438

 Score = 38.2 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 36/90 (40%), Gaps = 3/90 (3%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82
           ++ + +A L+    + +LD   G G ++    ++   V+ ++  P  V+  Q   R+   
Sbjct: 278 MVGQALAWLDVRADERVLDLFCGMGNFTLPLARLALRVVGVEGVPGLVATAQNNARNNGL 337

Query: 83  EQFSLFQATFSQ--LQDYVPDKGVDGVVFD 110
                F     +   +     +G D ++ D
Sbjct: 338 SNVEFFHQNLEEDVTRQAWASQGFDKILLD 367


>gi|118463304|ref|YP_881917.1| hypothetical protein MAV_2728 [Mycobacterium avium 104]
 gi|118164591|gb|ABK65488.1| conserved hypothetical protein [Mycobacterium avium 104]
          Length = 255

 Score = 38.2 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 35/97 (36%), Gaps = 9/97 (9%)

Query: 27  KVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFS 86
           + +  L P    V +D   G G ++R+     ++VIA++  P A       +        
Sbjct: 28  EAVDWLMPPDCGVAVDVGAGTGLFTRALAGRAAHVIAVE--PDARMRAV--LAHRSPAVR 83

Query: 87  LFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDR 123
           + +     +   +PD+  D V      S+       R
Sbjct: 84  VLEGRGEAIP--LPDRCADAVFV---SSAWHWMDPQR 115


>gi|118431301|ref|NP_147666.2| protein-L-isoaspartate O-methyltransferase [Aeropyrum pernix K1]
 gi|150421626|sp|Q9YDA1|PIMT_AERPE RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|116062623|dbj|BAA79996.2| protein-L-isoaspartate O-methyltransferase [Aeropyrum pernix K1]
          Length = 260

 Score = 38.2 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 7/63 (11%)

Query: 27  KVIALLNPAPGKVILDATFGAG-GYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDY 81
           +++ LL+P PG+ +LD   GAG GY  +        G  V A++R P      +E +   
Sbjct: 99  RMLQLLDPQPGEKVLD--VGAGSGYQSALLAELVTPGGRVYAVERIPELAEYARENLEKT 156

Query: 82  KEQ 84
             +
Sbjct: 157 GYR 159


>gi|41407788|ref|NP_960624.1| hypothetical protein MAP1690c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41396142|gb|AAS04007.1| hypothetical protein MAP_1690c [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 255

 Score = 38.2 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 35/97 (36%), Gaps = 9/97 (9%)

Query: 27  KVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFS 86
           + +  L P    V +D   G G ++R+     ++VIA++  P A       +        
Sbjct: 28  EAVDWLMPPDCGVAVDVGAGTGLFTRALAGRAAHVIAVE--PDARMRAV--LAHRSPAVR 83

Query: 87  LFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDR 123
           + +     +   +PD+  D V      S+       R
Sbjct: 84  VLEGRGEAIP--LPDRCADAVFV---SSAWHWMDPQR 115


>gi|14521973|ref|NP_127450.1| proliferating-cell nucleolar antigen P120, putative [Pyrococcus
           abyssi GE5]
 gi|5459193|emb|CAB50679.1| Sun/NOL1/NOP nucleolar protein [Pyrococcus abyssi GE5]
          Length = 385

 Score = 38.2 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 11/91 (12%)

Query: 32  LNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQFSL 87
           L P   ++I+D     GG   +     +    +IA+D+    +   +E +R    +   L
Sbjct: 194 LEPKEDELIIDMAAAPGGKTTHIAQLLQNRGEIIAIDKSKNRLKKMEENLRRLGVKNVKL 253

Query: 88  FQATFSQLQDYVPDKGVDGVVFD-----LGV 113
            Q     L D       D ++ D     LGV
Sbjct: 254 IQMDARNLPDL--GLKADKILLDAPCTALGV 282


>gi|285017549|ref|YP_003375260.1| methyltransferase [Xanthomonas albilineans GPE PC73]
 gi|283472767|emb|CBA15272.1| putative methyltransferase protein [Xanthomonas albilineans]
          Length = 260

 Score = 38.2 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 28/57 (49%)

Query: 21 VPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77
          VP L   V+ LL P PG+ ILD   G G  +      G++V+ +D  P  ++  +  
Sbjct: 25 VPALGTAVLDLLAPQPGERILDLGCGDGVLTAKLAASGADVLGVDVSPELIAAARTR 81


>gi|253997900|ref|YP_003049963.1| sun protein [Methylovorus sp. SIP3-4]
 gi|253984579|gb|ACT49436.1| sun protein [Methylovorus sp. SIP3-4]
          Length = 427

 Score = 38.2 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSLFQ 89
           LL+ APG  +LDA    GG +    ++   +++A+D D   +   +E ++  K +  L  
Sbjct: 238 LLDLAPGMRVLDACCAPGGKTGHILELADVDLVAMDSDAGRLRRTEENLQRLKLKAQLVT 297

Query: 90  ATFSQLQDYVPDKGVDGVVFDL 111
              +    +   +  D ++ D+
Sbjct: 298 GDAADASGWWDGRPFDRILADV 319


>gi|90423811|ref|YP_532181.1| dimethyladenosine transferase [Rhodopseudomonas palustris BisB18]
 gi|119365055|sp|Q215S4|RSMA_RHOPB RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|90105825|gb|ABD87862.1| dimethyladenosine transferase [Rhodopseudomonas palustris BisB18]
          Length = 286

 Score = 38.2 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 46  GAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSLFQA 90
           G GG +R+   +G+  VIA++RD  A+   QE    Y  +  +  A
Sbjct: 57  GPGGLTRALLALGAAKVIAIERDERALGALQEIAAHYPGRLEIVCA 102


>gi|306820623|ref|ZP_07454252.1| SAM-dependent methyltransferase [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551354|gb|EFM39316.1| SAM-dependent methyltransferase [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 186

 Score = 38.2 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 36/93 (38%), Gaps = 9/93 (9%)

Query: 29  IALLNPAPG----KVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMR-D 80
           I  L         K+ +DAT G G  + +  +       + A D    A+   +  +  +
Sbjct: 9   IQKLIIKSNLEDVKIAIDATLGNGKDTITIRETFGKKVKIYAFDIQRDAIERSKRNIPVE 68

Query: 81  YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
           Y +     Q +   +  YV +  V  V+F+LG 
Sbjct: 69  YHDNIEFIQDSHEFIDKYVEE-KVQLVMFNLGY 100


>gi|269960399|ref|ZP_06174772.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269834826|gb|EEZ88912.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 436

 Score = 38.2 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 3/90 (3%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR-DYK 82
           ++ + +  L+P   + +LD   G G +S    K   +V+ ++     V         +  
Sbjct: 281 MVAQAVEWLDPQSDERVLDLFCGLGNFSLPIAKRAKHVVGVEGVAEMVEKAANNASLNQI 340

Query: 83  EQFSLFQATFSQLQD--YVPDKGVDGVVFD 110
                + A   Q  +      +  D V+ D
Sbjct: 341 NNAQFYHANLEQDFEGQVWAAEQFDKVLLD 370


>gi|295397805|ref|ZP_06807870.1| ribosomal RNA small subunit methyltransferase B [Aerococcus
           viridans ATCC 11563]
 gi|294973940|gb|EFG49702.1| ribosomal RNA small subunit methyltransferase B [Aerococcus
           viridans ATCC 11563]
          Length = 482

 Score = 38.2 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 36/98 (36%), Gaps = 10/98 (10%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMR--DYK 82
            +  LNP PG+ +LDA    GG +    +      +VIA D     +   QE +      
Sbjct: 274 AVEALNPKPGETVLDACAAPGGKTVQIAEAVGRTGHVIACDIAENKLPLIQENVDRMQVA 333

Query: 83  EQFSLFQATFSQLQDYVPDKG-----VDGVVFDLGVSS 115
           +   +     + L D   + G      D ++ D   S 
Sbjct: 334 DHVEILHQDATALLDRFGENGSEPTSFDKILVDAPCSG 371


>gi|114706569|ref|ZP_01439470.1| SUN-family protein [Fulvimarina pelagi HTCC2506]
 gi|114537961|gb|EAU41084.1| SUN-family protein [Fulvimarina pelagi HTCC2506]
          Length = 433

 Score = 38.2 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 5/79 (6%)

Query: 35  APGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91
            PG  +LD   GAGG + +     +    + + D D   ++   E ++    +       
Sbjct: 230 QPGNQVLDLCAGAGGKTLALAAAMENTGQIHSYDGDRQRLAPIYERLKRAGVRNVQVHDP 289

Query: 92  FSQLQDYVPDKGVDGVVFD 110
            + L D   +  +D V+ D
Sbjct: 290 RADLSDL--EGAMDIVLVD 306


>gi|258649232|ref|ZP_05736701.1| acetate kinase [Prevotella tannerae ATCC 51259]
 gi|260850412|gb|EEX70281.1| acetate kinase [Prevotella tannerae ATCC 51259]
          Length = 399

 Score = 38.2 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 48/127 (37%), Gaps = 28/127 (22%)

Query: 1   MESKSCKTMSSAIHHTI-GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS 59
           M +++    +SAI + +  +H    LE+ + LLN     V      G         +M S
Sbjct: 237 MGTRTGDIDASAILYIMEREHQT--LEEAVNLLN-KESGV-----LG-------ITEMSS 281

Query: 60  NVIALDRDPFAVSCGQET----MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSS 115
           ++  +D    A   G E     +  Y  +   +   ++         GVD ++F  GV  
Sbjct: 282 DMRIID---DAAMAGNERAQLALDMYDYRIKKYIGAYA-----AAMNGVDAIIFTAGVGE 333

Query: 116 MQIDCGD 122
            Q D  +
Sbjct: 334 HQWDVRE 340


>gi|271969427|ref|YP_003343623.1| type 11 methyltransferase [Streptosporangium roseum DSM 43021]
 gi|270512602|gb|ACZ90880.1| methyltransferase type 11 [Streptosporangium roseum DSM 43021]
          Length = 237

 Score = 38.2 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 20/41 (48%)

Query: 32 LNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVS 72
          L   PG  +LD   G G ++    + G++V+A D D   + 
Sbjct: 9  LPVGPGTRVLDLGCGGGRHAFEVLRRGADVVAFDMDAEELE 49


>gi|212224547|ref|YP_002307783.1| SAM-dependent methyltransferase [Thermococcus onnurineus NA1]
 gi|212009504|gb|ACJ16886.1| SAM-dependent methyltransferase [Thermococcus onnurineus NA1]
          Length = 228

 Score = 38.2 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 25/61 (40%)

Query: 36 PGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95
          P   +LD   G GG+S     +G +V+ALD     +   ++  +D   +    +     L
Sbjct: 38 PRGKVLDLACGVGGFSFLLEDLGFDVVALDSSESMLEKARKFAKDKMSRVEFVKGNAENL 97

Query: 96 Q 96
           
Sbjct: 98 P 98


>gi|163802964|ref|ZP_02196851.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio sp. AND4]
 gi|159173254|gb|EDP58082.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio sp. AND4]
          Length = 439

 Score = 38.2 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 3/90 (3%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR-DYK 82
           ++ + +  L+P   + +LD   G G +S    K   +V+ ++     V         +  
Sbjct: 281 MVAQAVDWLDPKSDERVLDLFCGLGNFSLPIAKHAKHVVGVEGVAEMVEKAANNASLNQI 340

Query: 83  EQFSLFQATFSQLQD--YVPDKGVDGVVFD 110
                + A   Q  +      +  D V+ D
Sbjct: 341 NNAQFYHANLEQDFEGQVWAAEQFDKVLLD 370


>gi|45250002|gb|AAS55715.1| putative methyltransferase [Aneurinibacillus thermoaerophilus]
          Length = 467

 Score = 38.2 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 6/74 (8%)

Query: 36  PGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95
            G+ +LD   G G ++      G  V  +D D   V+  ++        F + ++     
Sbjct: 274 EGQYVLDLGCGRGEFTELLLSKGIKVTCVDIDEDMVAYCKDR------GFPIVKSDLFSY 327

Query: 96  QDYVPDKGVDGVVF 109
            + VPD+ VDG+  
Sbjct: 328 LNSVPDRSVDGIFL 341


>gi|159905188|ref|YP_001548850.1| putative RNA methylase [Methanococcus maripaludis C6]
 gi|159886681|gb|ABX01618.1| putative RNA methylase [Methanococcus maripaludis C6]
          Length = 351

 Score = 38.2 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 57/171 (33%), Gaps = 25/171 (14%)

Query: 25  LEKVIALLN-PAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82
           L + +  L+    G+++LD   G GG+      +G  +I  D D   V      +  Y  
Sbjct: 193 LARCLVNLSRVKEGEIVLDPFCGTGGFLIEAGFLGCKLIGSDIDEQMVKGAILNLNTYDL 252

Query: 83  --EQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137
             +  S+ Q     +  Y+ + G   +DG+V D             G S  K G  DM  
Sbjct: 253 SKQVISIKQNDAKNVSKYLEELGIEKIDGIVTD----------PPYGISTSKKG--DMLE 300

Query: 138 SCSGISASDVVNQA------NVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
               I      N        N  +L   L    E +    +   I   R+ 
Sbjct: 301 IFEKIVGVLKDNDYLVFAAPNKMELDLNLIEFYEMRVHKSLTRYIHVYRKD 351


>gi|253681007|ref|ZP_04861810.1| possible rRNA methylase [Clostridium botulinum D str. 1873]
 gi|253562856|gb|EES92302.1| possible rRNA methylase [Clostridium botulinum D str. 1873]
          Length = 189

 Score = 38.2 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 7/95 (7%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETMRD 80
           L ++ IA+     G + +DAT G G  +    ++  +   V + D    A+   ++ + D
Sbjct: 12  LAKE-IAIKKLQHGDIAVDATMGNGNDTVFLAELVGDSGTVYSFDVQKEAIDNTRKKIID 70

Query: 81  --YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
              K    L       +  Y+ +K V  V+F+LG 
Sbjct: 71  NKIKTNIQLIHDGHENIDKYI-NKDVKLVMFNLGY 104


>gi|34809569|pdb|1IXK|A Chain A, Crystal Structure Analysis Of Methyltransferase Homolog
           Protein From Pyrococcus Horikoshii
          Length = 315

 Score = 38.2 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 38/100 (38%), Gaps = 10/100 (10%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETMRDYKE-QFS 86
            L+P PG+++ D     GG +    ++  N   + A D D   +   +  +         
Sbjct: 113 ALDPKPGEIVADXAAAPGGKTSYLAQLXRNDGVIYAFDVDENRLRETRLNLSRLGVLNVI 172

Query: 87  LFQATFSQLQDYVPDKGVDGVVFDL---GVSSMQIDCGDR 123
           LF ++   + +   +   D ++ D    G  ++     +R
Sbjct: 173 LFHSSSLHIGELNVE--FDKILLDAPCTGSGTIH-KNPER 209


>gi|282851389|ref|ZP_06260754.1| conserved hypothetical protein [Lactobacillus gasseri 224-1]
 gi|282557357|gb|EFB62954.1| conserved hypothetical protein [Lactobacillus gasseri 224-1]
          Length = 226

 Score = 38.2 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 42/115 (36%), Gaps = 7/115 (6%)

Query: 1   MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS- 59
           M  K  K    A      +    L  + +  L+  P + ++DA  G G  +         
Sbjct: 39  MLGKKFKLSPRAFFQLNPEQTSTLYSEALKYLDLTPDQTLIDAYAGVG--TLGILASDQV 96

Query: 60  -NVIALDRDPFAVSCGQETMR-DYKEQFSLFQATFSQLQDYVPDKGV--DGVVFD 110
             VI ++  P AV   QE    ++       Q    +L   + ++GV  D ++ D
Sbjct: 97  RQVIGIESIPEAVIDAQENCHLNHVRNAEYIQGNVEKLLPELKNQGVPIDALIVD 151


>gi|221379831|ref|NP_732316.2| tat-like [Drosophila melanogaster]
 gi|220903121|gb|AAF55523.3| tat-like [Drosophila melanogaster]
          Length = 466

 Score = 38.2 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96
           VI+DA  G GG +  F      VIA+D D   ++  +     Y    +     A F Q  
Sbjct: 301 VIVDAFCGCGGNAIQFANTCGRVIAVDIDAEKLAMAKHNAGIYGVAHKIEFIHADFLQFA 360


>gi|209447527|pdb|3EGE|A Chain A, Crystal Structure Of Putative Methyltransferase From
           Antibiotic Biosynthesis Pathway (Yp_324569.1) From
           Anabaena Variabilis Atcc 29413 At 2.40 A Resolution
          Length = 261

 Score = 38.2 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 84/224 (37%), Gaps = 19/224 (8%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84
           +  +I LLN   G VI D   G GGYS +    G  V A++  P  V   Q  +    E 
Sbjct: 23  VNAIINLLNLPKGSVIADIGAGTGGYSVALANQGLFVYAVE--PSIVXRQQAVVHPQVEW 80

Query: 85  FSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ------KSGPLDMRMS 138
           F+ +    +     +PDK VDGV+  L +        ++  SFQ      + G + +   
Sbjct: 81  FTGYAENLA-----LPDKSVDGVISILAI--HHFSHLEK--SFQEXQRIIRDGTIVLLTF 131

Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198
              ++    +           L  L  ++Q + +     +R ++ PF    DLS L    
Sbjct: 132 DIRLAQRIWLYDYFPFLWEDALRFLPLDEQINLLQENTKRRVEAIPFLLPHDLSDLFAAA 191

Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
            +      +    R+  +     N ++  + +GL      L  G
Sbjct: 192 AWRRPELYLKAEVRAGISSFALANQDL--VEKGLELLTADLNNG 233


>gi|163803827|ref|ZP_02197677.1| ribosomal protein L11 methyltransferase [Vibrio sp. AND4]
 gi|159172370|gb|EDP57247.1| ribosomal protein L11 methyltransferase [Vibrio sp. AND4]
          Length = 295

 Score = 38.2 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 34/92 (36%), Gaps = 21/92 (22%)

Query: 28  VIALLNPAP--GKVILDATFGAGGYSRSFCKMGS------NVIALDRDPFAVSCGQETMR 79
            +  L      GK ++D  FG G        + +       VI +D DP A+   ++   
Sbjct: 149 CLEWLESKDLSGKTVID--FGCG---SGILAIAAIKLGAEKVIGIDIDPQALQASRDNAE 203

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDL 111
                         QL+ Y+P    +G++ D+
Sbjct: 204 R--------NGVADQLEVYLPQNQPEGLLADV 227


>gi|170727692|ref|YP_001761718.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella woodyi ATCC
           51908]
 gi|226725394|sp|B1KPU0|RUMA_SHEWM RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|169813039|gb|ACA87623.1| RNA methyltransferase, TrmA family [Shewanella woodyi ATCC 51908]
          Length = 443

 Score = 38.2 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 36/89 (40%), Gaps = 2/89 (2%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82
           ++++ +  L+    + +LD   G G +S    K G+ VI ++  P  V+  +   +    
Sbjct: 286 MVDQAVQWLDVKADERVLDLFCGVGNFSLPLAKSGAEVIGVEGVPEMVAQARINAKQSDL 345

Query: 83  EQFSLFQATFS-QLQDYVPDKGVDGVVFD 110
              + F    S  L        VD ++ D
Sbjct: 346 SDVTFFHTDLSADLSKEPWLGKVDKLLLD 374


>gi|66571188|gb|AAY51559.1| IP01327p [Drosophila melanogaster]
 gi|68051281|gb|AAY84904.1| LD22407p [Drosophila melanogaster]
 gi|220943348|gb|ACL84217.1| CG31241-PB [synthetic construct]
 gi|220953320|gb|ACL89203.1| CG31241-PB [synthetic construct]
          Length = 491

 Score = 38.2 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96
           VI+DA  G GG +  F      VIA+D D   ++  +     Y    +     A F Q  
Sbjct: 326 VIVDAFCGCGGNAIQFANTCGRVIAVDIDAEKLAMAKHNAGIYGVAHKIEFIHADFLQFA 385


>gi|116629999|ref|YP_815171.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus
           gasseri ATCC 33323]
 gi|238853814|ref|ZP_04644180.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus gasseri
           202-4]
 gi|311110369|ref|ZP_07711766.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus gasseri
           MV-22]
 gi|116095581|gb|ABJ60733.1| 23S rRNA m(5)U-1939 methyltransferase [Lactobacillus gasseri ATCC
           33323]
 gi|238833623|gb|EEQ25894.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus gasseri
           202-4]
 gi|311065523|gb|EFQ45863.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus gasseri
           MV-22]
          Length = 462

 Score = 38.2 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 42/115 (36%), Gaps = 7/115 (6%)

Query: 1   MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS- 59
           M  K  K    A      +    L  + +  L+  P + ++DA  G G  +         
Sbjct: 275 MLGKKFKLSPRAFFQLNPEQTSTLYSEALKYLDLTPDQTLIDAYAGVG--TLGILASDQV 332

Query: 60  -NVIALDRDPFAVSCGQETMR-DYKEQFSLFQATFSQLQDYVPDKGV--DGVVFD 110
             VI ++  P AV   QE    ++       Q    +L   + ++GV  D ++ D
Sbjct: 333 RQVIGIESIPEAVIDAQENCHLNHVRNAEYIQGNVEKLLPELKNQGVPIDALIVD 387


>gi|315143898|gb|EFT87914.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX2141]
          Length = 456

 Score = 38.2 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 33/98 (33%), Gaps = 17/98 (17%)

Query: 23  VLLEKVIALLNPAPGKVILD-----ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77
           VL  + I +L+  P + ++D      T G      S  K    V  +D  P A+   +  
Sbjct: 297 VLYNEGIKVLDLQPNETVVDAYCGVGTIG-----LSLAKQAHQVRGMDTIPAAIDDARFN 351

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFD 110
            +      +         +D +P         D +V D
Sbjct: 352 AKRLG--VTNTHYAVGTAEDLLPKWFKEGFKPDAIVVD 387


>gi|254718818|ref|ZP_05180629.1| dimethyladenosine transferase [Brucella sp. 83/13]
 gi|265983803|ref|ZP_06096538.1| dimethyladenosine transferase [Brucella sp. 83/13]
 gi|306838740|ref|ZP_07471574.1| dimethyladenosine transferase [Brucella sp. NF 2653]
 gi|264662395|gb|EEZ32656.1| dimethyladenosine transferase [Brucella sp. 83/13]
 gi|306406142|gb|EFM62387.1| dimethyladenosine transferase [Brucella sp. NF 2653]
          Length = 276

 Score = 38.2 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 19/45 (42%)

Query: 46  GAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQA 90
           G GG +R+    G+ V A++RD   +    E    Y  +  +   
Sbjct: 56  GPGGLTRALLAQGAYVTAIERDDRCLEALAEIAAHYPGRLRIIAG 100


>gi|323500063|ref|ZP_08105017.1| SAM-dependent methyltransferase [Vibrio sinaloensis DSM 21326]
 gi|323314919|gb|EGA67976.1| SAM-dependent methyltransferase [Vibrio sinaloensis DSM 21326]
          Length = 210

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 1/70 (1%)

Query: 27  KVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFS 86
           + +  L+ +   V +D   G G        +G  V   D +P A+    +   + + Q S
Sbjct: 37  EFVHQLSKSNEGVAIDCGCGTGSDIDYLSAVGYKVYGFDPNPDAIEICVQRFAE-RPQVS 95

Query: 87  LFQATFSQLQ 96
           + QA F   Q
Sbjct: 96  IQQARFENFQ 105


>gi|295839889|ref|ZP_06826822.1| methyltransferase [Streptomyces sp. SPB74]
 gi|295827696|gb|EFG65548.1| methyltransferase [Streptomyces sp. SPB74]
          Length = 196

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 25/54 (46%)

Query: 51  SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV 104
           +    + G+ V+A+D DP A +    + R +  +  +   +   + + +P+  V
Sbjct: 62  TAEAARFGAAVLAIDADPDACARTTASARRFGVRVQVVHGSAPHILEDLPEPDV 115


>gi|310765566|gb|ADP10516.1| Ribosomal RNA small subunit methyltransferase B [Erwinia sp.
           Ejp617]
          Length = 441

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85
            +ALL P  G+ ILD     GG +    +      V+A+D D   ++   E ++      
Sbjct: 250 CVALLAPRDGEQILDLCAAPGGKTTHILEAAPQAKVLAVDVDAQRLARISENLQRLNLHA 309

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            +          +  D+  D ++ D   S
Sbjct: 310 EVKLGDGRTPAAWCGDRLFDRILLDAPCS 338


>gi|283480068|emb|CAY75984.1| Ribosomal RNA small subunit methyltransferase B [Erwinia pyrifoliae
           DSM 12163]
          Length = 456

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85
            +ALL P  G+ ILD     GG +    +      V+A+D D   ++   E ++      
Sbjct: 265 CVALLAPRDGEQILDLCAAPGGKTTHILEAAPQAKVLAVDVDAQRLARISENLQRLNLHA 324

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            +          +  D+  D ++ D   S
Sbjct: 325 EVKLGDGRTPAAWCGDRLFDRILLDAPCS 353


>gi|241759288|ref|ZP_04757394.1| 23S rRNA-methyltransferase [Neisseria flavescens SK114]
 gi|241320424|gb|EER56721.1| 23S rRNA-methyltransferase [Neisseria flavescens SK114]
          Length = 441

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 4/92 (4%)

Query: 23  VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQE--TMRD 80
           V++ + + LLNP  G+ I D   G G +S    K G++V+ ++   + V   +E   +  
Sbjct: 281 VMVARAVRLLNPQKGERIADLFCGLGNFSVPLAKSGASVVGIEGADYLVDRARENARLNR 340

Query: 81  YKEQFSL-FQATFSQLQDYVPDKG-VDGVVFD 110
             E  +      F   +  V   G  D ++ D
Sbjct: 341 CAENMTFSVADLFDTDEKTVESWGRFDKMLLD 372


>gi|259909968|ref|YP_002650324.1| 16S rRNA methyltransferase B [Erwinia pyrifoliae Ep1/96]
 gi|224965590|emb|CAX57122.1| 16S rRNA methyltransferase B [Erwinia pyrifoliae Ep1/96]
          Length = 429

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 2/89 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85
            +ALL P  G+ ILD     GG +    +      V+A+D D   ++   E ++      
Sbjct: 238 CVALLAPRDGEQILDLCAAPGGKTTHILEAAPQAKVLAVDVDAQRLARISENLQRLNLHA 297

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
            +          +  D+  D ++ D   S
Sbjct: 298 EVKLGDGRTPAAWCGDRLFDRILLDAPCS 326


>gi|218887204|ref|YP_002436525.1| rRNA methylase [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758158|gb|ACL09057.1| putative rRNA methylase [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 243

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 30/83 (36%), Gaps = 12/83 (14%)

Query: 41  LDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQ 94
           +D T G  G+   F          V A D  P A++   E +      E+ +L      +
Sbjct: 72  VDGTAGN-GHDTLFLARLVGARGLVHAFDVQPRALARTAERLASEGLEERVALHGRGHEE 130

Query: 95  LQDYVPDKGV-----DGVVFDLG 112
           L   +   GV        +F+LG
Sbjct: 131 LAAALASHGVWPPRISAAMFNLG 153


>gi|150403072|ref|YP_001330366.1| putative RNA methylase [Methanococcus maripaludis C7]
 gi|150034102|gb|ABR66215.1| putative RNA methylase [Methanococcus maripaludis C7]
          Length = 350

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 63/169 (37%), Gaps = 21/169 (12%)

Query: 25  LEKVIALLN-PAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82
           L + +  L+    G+++LD   G GG+      +G  +I  D D   V      +  Y  
Sbjct: 192 LARCLVNLSRVKEGEIVLDPFCGTGGFLIEAGFLGCKLIGSDIDEQMVKGAILNLNTYDL 251

Query: 83  --EQFSLFQATFSQLQDYVPDKG---VDGVVFDLGVSSMQIDCGDRGFS-FQKSGPLDMR 136
             +  S+ Q     +  Y+ + G   +DG+V D             G S F+K   L++ 
Sbjct: 252 SKQVISIKQNDAKNVSKYLGELGIEKIDGIVTD----------PPYGISTFKKGDMLEIF 301

Query: 137 MSCSGI---SASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS 182
              +G+   +   V    N  +L   L    E +    +   I   R++
Sbjct: 302 EKIAGVLKNNDYLVFAAPNKMELNLELVKFYEMRVHKSLTRYIHVYRKN 350


>gi|322802317|gb|EFZ22713.1| hypothetical protein SINV_12301 [Solenopsis invicta]
          Length = 1030

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 2/63 (3%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96
            I+DA  GAG  S  F      VIA+D DP  +   +     Y   ++       F QL 
Sbjct: 874 TIIDAFCGAGSNSIQFAFTCERVIAIDIDPNKIKIARHNAGIYGVDDRIEFITGDFLQLA 933

Query: 97  DYV 99
             +
Sbjct: 934 PQL 936


>gi|307171691|gb|EFN63426.1| Trimethylguanosine synthase-like protein [Camponotus floridanus]
          Length = 1026

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 2/63 (3%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96
            I+DA  GAG  S  F      VIA+D DP  +   +     Y   ++       F QL 
Sbjct: 870 TIIDAFCGAGSNSIQFAFTCERVIAIDIDPNKIKIARHNAGIYGVDDRIEFITGDFLQLA 929

Query: 97  DYV 99
             +
Sbjct: 930 PQL 932


>gi|269127860|ref|YP_003301230.1| type 11 methyltransferase [Thermomonospora curvata DSM 43183]
 gi|268312818|gb|ACY99192.1| Methyltransferase type 11 [Thermomonospora curvata DSM 43183]
          Length = 255

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 25/53 (47%)

Query: 30 ALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82
                PG  +LD   GAG ++    + G++V+A D D   ++  ++  R  +
Sbjct: 7  ERFPITPGDHVLDMGCGAGRHAFELYRRGAHVVAFDLDADELAGVEKMFRAMR 59


>gi|28899340|ref|NP_798945.1| 23S rRNA 5-methyluridine methyltransferase [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|260363768|ref|ZP_05776537.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio
           parahaemolyticus K5030]
 gi|260878969|ref|ZP_05891324.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio
           parahaemolyticus AN-5034]
 gi|260898314|ref|ZP_05906810.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio
           parahaemolyticus Peru-466]
 gi|50401546|sp|Q87LP5|RUMA_VIBPA RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|28807576|dbj|BAC60829.1| putative TrmA family RNA methyltransferase [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|308085240|gb|EFO34935.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio
           parahaemolyticus Peru-466]
 gi|308090505|gb|EFO40200.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio
           parahaemolyticus AN-5034]
 gi|308111237|gb|EFO48777.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio
           parahaemolyticus K5030]
          Length = 439

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 3/90 (3%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR-DYK 82
           ++E+ I  L+P   + +LD   G G +S    K   +V+ ++     V         +  
Sbjct: 281 MVEQAIKWLDPQSDERVLDLFCGLGNFSLPIAKRAKHVVGVEGVAEMVEKASNNASLNQI 340

Query: 83  EQFSLFQATFSQLQD--YVPDKGVDGVVFD 110
                + A   Q  D      +  D V+ D
Sbjct: 341 NNAQFYHANLEQDFDGQAWAAEKFDKVLLD 370


>gi|328553098|gb|AEB23590.1| methyltransferase [Bacillus amyloliquefaciens TA208]
 gi|328912130|gb|AEB63726.1| putative methyltransferase [Bacillus amyloliquefaciens LL3]
          Length = 256

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 32/100 (32%), Gaps = 17/100 (17%)

Query: 26  EKVIALLNPAPGKVILDATFGAGGYSRSFCK-----MGSNVIALDR----------DPFA 70
           E +I       G   LD T G    S +            VI L++              
Sbjct: 84  EPMIKAAGLREGDTFLDCTLGLA--SDAILASMAVGKSGQVIGLEKNKLVSLLVETGLQT 141

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFD 110
              G E ++   ++  +  A  S     +PD  VD + FD
Sbjct: 142 WETGIEPLQTAMKRIQVKHADCSDYLRNLPDSSVDVIYFD 181


>gi|126460130|ref|YP_001056408.1| cobalt-precorrin-6Y C(15)-methyltransferase [Pyrobaculum
           calidifontis JCM 11548]
 gi|166225724|sp|A3MWC5|CBIT_PYRCJ RecName: Full=Probable cobalt-precorrin-6Y C(15)-methyltransferase
           [decarboxylating]
 gi|126249851|gb|ABO08942.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Pyrobaculum calidifontis JCM 11548]
          Length = 195

 Score = 37.9 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 5/79 (6%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRS---FCKMGSNVIALDRDPFAVSCGQETMRDYK-- 82
            ++ L    G V++D   G G  S         GS V A+D D  A+   +     +   
Sbjct: 32  ALSKLRLRRGGVLVDVGCGTGSVSVEAALIMGEGSRVYAVDYDEEALMLTKRNAEKFGVA 91

Query: 83  EQFSLFQATFSQLQDYVPD 101
           ++  L +    ++   +P 
Sbjct: 92  DRVVLVRGKAPEVLAELPK 110


>gi|308173976|ref|YP_003920681.1| methyltransferase [Bacillus amyloliquefaciens DSM 7]
 gi|307606840|emb|CBI43211.1| putative methyltransferase [Bacillus amyloliquefaciens DSM 7]
          Length = 256

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 32/100 (32%), Gaps = 17/100 (17%)

Query: 26  EKVIALLNPAPGKVILDATFGAGGYSRSFCK-----MGSNVIALDR----------DPFA 70
           E +I       G   LD T G    S +            VI L++              
Sbjct: 84  EPMIKAAGLREGDTFLDCTLGLA--SDAILASMAVGKSGQVIGLEKNKLVSLLVETGLQT 141

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFD 110
              G E ++   ++  +  A  S     +PD  VD + FD
Sbjct: 142 WETGIEPLQTAMKRIQVKHADCSDYLRNLPDSSVDVIYFD 181


>gi|298674358|ref|YP_003726108.1| type 11 methyltransferase [Methanohalobium evestigatum Z-7303]
 gi|298287346|gb|ADI73312.1| Methyltransferase type 11 [Methanohalobium evestigatum Z-7303]
          Length = 267

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 3/97 (3%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSL 87
           +I +L     K +LD   G G  S    + G  V++ D +P  ++   E  R Y      
Sbjct: 51  IINILKERGVKKVLDVATGTGFNSVRLLQAGFEVVSADGNPEMLAKAFENARKYGYLMRT 110

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGVS-SMQIDCGDR 123
            QA +  ++  V +   D ++  LG S +   +  DR
Sbjct: 111 VQADWRWMKQDVHE-NFDAIIC-LGNSFTHLFNERDR 145


>gi|221069847|ref|ZP_03545952.1| SurA domain protein [Comamonas testosteroni KF-1]
 gi|220714870|gb|EED70238.1| SurA domain protein [Comamonas testosteroni KF-1]
          Length = 475

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 44/136 (32%), Gaps = 17/136 (12%)

Query: 50  YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVF 109
           ++R                   +   + + DYK +    QATF QL       G      
Sbjct: 332 HARHILLTVGE-------GMTEAQAAKRLEDYKRRVEAGQATFQQLAQEFSKDGSARNGG 384

Query: 110 DLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVK--DLTRILGILGEEK 167
           DLG SS      +          LD      G  ++ VV++  V    L         E+
Sbjct: 385 DLGWSSPGQFVPE------FERVLDSL--QPGQISNPVVSRFGVHLIQLIERRQEKLTER 436

Query: 168 QASRIAHAIVKRRQSA 183
           +   +   +V+ R++ 
Sbjct: 437 EQREMVRNVVRERKAE 452


>gi|306845283|ref|ZP_07477859.1| dimethyladenosine transferase [Brucella sp. BO1]
 gi|306274442|gb|EFM56249.1| dimethyladenosine transferase [Brucella sp. BO1]
          Length = 276

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 19/45 (42%)

Query: 46  GAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQA 90
           G GG +R+    G+ V A++RD   +    E    Y  +  +   
Sbjct: 56  GPGGLTRALLAQGAYVTAIERDDRCLEALAEIAAHYPGRLRIIAG 100


>gi|198284531|ref|YP_002220852.1| TrmA family RNA methyltransferase [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218667266|ref|YP_002427198.1| 23S rRNA (uracil-5-)-methyltransferase [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|254766918|sp|B7J921|RUMA_ACIF2 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|254766919|sp|B5EPA4|RUMA_ACIF5 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|198249052|gb|ACH84645.1| RNA methyltransferase, TrmA family [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218519479|gb|ACK80065.1| 23S rRNA (uracil-5-)-methyltransferase [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 440

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 47/92 (51%), Gaps = 4/92 (4%)

Query: 23  VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRD----PFAVSCGQETM 78
           V++ + +ALL P PG+ ILD   G G ++    ++G+ V+ ++ D      A        
Sbjct: 281 VMVRRAMALLQPQPGEHILDLFCGLGNFTLPIARLGAQVLGIEGDARLVALAAENAAANG 340

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFD 110
              K ++++   T ++++D+ P   +D ++ D
Sbjct: 341 LADKARYAVADLTQARMEDFAPAGAIDKMLID 372


>gi|163842952|ref|YP_001627356.1| dimethyladenosine transferase [Brucella suis ATCC 23445]
 gi|189028803|sp|B0CL06|RSMA_BRUSI RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|163673675|gb|ABY37786.1| dimethyladenosine transferase [Brucella suis ATCC 23445]
          Length = 276

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 19/45 (42%)

Query: 46  GAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQA 90
           G GG +R+    G+ V A++RD   +    E    Y  +  +   
Sbjct: 56  GPGGLTRALLAQGAYVTAIERDDRCLEALAEIAAHYPGRLRIIAG 100


>gi|317049808|ref|YP_004117456.1| sun protein [Pantoea sp. At-9b]
 gi|316951425|gb|ADU70900.1| sun protein [Pantoea sp. At-9b]
          Length = 428

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 2/86 (2%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQFSLF 88
           LL P  G+ ILD     GG +    ++     V+A+D D   ++  +E ++    Q  + 
Sbjct: 240 LLEPQNGESILDLCAAPGGKTTHILEIAPQAAVLAVDIDEQRLTRVRENLQRLGMQADVR 299

Query: 89  QATFSQLQDYVPDKGVDGVVFDLGVS 114
           Q       ++  DK  D ++ D   S
Sbjct: 300 QGDGRTPAEWCGDKQFDRILLDAPCS 325


>gi|89067369|ref|ZP_01154882.1| nicotinate-nucleotide pyrophosphorylase [Oceanicola granulosus
           HTCC2516]
 gi|89046938|gb|EAR52992.1| nicotinate-nucleotide pyrophosphorylase [Oceanicola granulosus
           HTCC2516]
          Length = 285

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 7/74 (9%)

Query: 47  AGGY------SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP 100
            GG+      S +     ++ IA      AV     T   +  +  +      QL++ + 
Sbjct: 157 GGGHNHRFSLSDAILIKDNH-IAAAGGIPAVLAAVRTQASHMVRVEIEVDRLDQLEEVLA 215

Query: 101 DKGVDGVVFDLGVS 114
           + G D V+ D   S
Sbjct: 216 EGGADVVLLDNMDS 229


>gi|306842053|ref|ZP_07474726.1| dimethyladenosine transferase [Brucella sp. BO2]
 gi|306287894|gb|EFM59314.1| dimethyladenosine transferase [Brucella sp. BO2]
          Length = 276

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 19/45 (42%)

Query: 46  GAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQA 90
           G GG +R+    G+ V A++RD   +    E    Y  +  +   
Sbjct: 56  GPGGLTRALLAQGAYVTAIERDDRCLEALAEIAAHYPGRLRIIAG 100


>gi|296812885|ref|XP_002846780.1| WW domain-containing protein [Arthroderma otae CBS 113480]
 gi|238842036|gb|EEQ31698.1| WW domain-containing protein [Arthroderma otae CBS 113480]
          Length = 238

 Score = 37.9 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 7/77 (9%)

Query: 39  VILDATF-GAGGYSRSFCK--MGSNVIALDRDPFAVSCGQETMRDY--KEQFSLFQA-TF 92
           +++D TF GAGG + +F K      V A+++DP  + C +     Y   ++ + F    F
Sbjct: 74  ILID-TFAGAGGNTIAFAKSNRWKRVYAIEKDPETLRCAKHNAELYGVGDKITWFLGDCF 132

Query: 93  SQLQDYVPDKGVDGVVF 109
             LQ+ + D     V+F
Sbjct: 133 EILQNQLKDLAPYSVIF 149


>gi|254173370|ref|ZP_04880043.1| SAM-dependent methyltransferase [Thermococcus sp. AM4]
 gi|214032779|gb|EEB73608.1| SAM-dependent methyltransferase [Thermococcus sp. AM4]
          Length = 285

 Score = 37.9 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 27/194 (13%), Positives = 61/194 (31%), Gaps = 41/194 (21%)

Query: 29  IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCG----QETMRDYKEQ 84
           +  + P  G+ +LD   G G  +    K G+ VI +++D   +                +
Sbjct: 118 VNAVKPKEGETVLDTCMGLGYTAIEASKRGAYVITIEKDKNVIELARINPWSRELFTGGR 177

Query: 85  FSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISA 144
             +      ++     D+  D V+ D            R FS                 A
Sbjct: 178 IQVIHGDAFEVVKRFKDESFDVVIHD----------PPR-FSL----------------A 210

Query: 145 SDVVNQANVKDLTRILG----------ILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194
             + ++   ++L R+L             G++ +   +   +++R + A F   + +   
Sbjct: 211 GQLYSEEFYRELFRVLKPGGRLFHYVGNPGKKYRRKDLQKGVMERLRRAGFVGVKRVEEA 270

Query: 195 IQKTVYFSKNNRIH 208
           +       +N    
Sbjct: 271 LGVVARKPENKGGK 284


>gi|23501569|ref|NP_697696.1| dimethyladenosine transferase [Brucella suis 1330]
 gi|82699572|ref|YP_414146.1| dimethyladenosine transferase [Brucella melitensis biovar Abortus
           2308]
 gi|148560508|ref|YP_001258664.1| dimethyladenosine transferase [Brucella ovis ATCC 25840]
 gi|161618651|ref|YP_001592538.1| dimethyladenosine transferase [Brucella canis ATCC 23365]
 gi|189023894|ref|YP_001934662.1| dimethyladenosine transferase [Brucella abortus S19]
 gi|225627179|ref|ZP_03785217.1| dimethyladenosine transferase [Brucella ceti str. Cudo]
 gi|225852202|ref|YP_002732435.1| dimethyladenosine transferase [Brucella melitensis ATCC 23457]
 gi|237815135|ref|ZP_04594133.1| dimethyladenosine transferase [Brucella abortus str. 2308 A]
 gi|254688954|ref|ZP_05152208.1| dimethyladenosine transferase [Brucella abortus bv. 6 str. 870]
 gi|254693436|ref|ZP_05155264.1| dimethyladenosine transferase [Brucella abortus bv. 3 str. Tulya]
 gi|254697088|ref|ZP_05158916.1| dimethyladenosine transferase [Brucella abortus bv. 2 str. 86/8/59]
 gi|254701465|ref|ZP_05163293.1| dimethyladenosine transferase [Brucella suis bv. 5 str. 513]
 gi|254704012|ref|ZP_05165840.1| dimethyladenosine transferase [Brucella suis bv. 3 str. 686]
 gi|254707614|ref|ZP_05169442.1| dimethyladenosine transferase [Brucella pinnipedialis M163/99/10]
 gi|254709803|ref|ZP_05171614.1| dimethyladenosine transferase [Brucella pinnipedialis B2/94]
 gi|254713807|ref|ZP_05175618.1| dimethyladenosine transferase [Brucella ceti M644/93/1]
 gi|254717135|ref|ZP_05178946.1| dimethyladenosine transferase [Brucella ceti M13/05/1]
 gi|254729984|ref|ZP_05188562.1| dimethyladenosine transferase [Brucella abortus bv. 4 str. 292]
 gi|256031294|ref|ZP_05444908.1| dimethyladenosine transferase [Brucella pinnipedialis M292/94/1]
 gi|256113218|ref|ZP_05454086.1| dimethyladenosine transferase [Brucella melitensis bv. 3 str.
           Ether]
 gi|256159408|ref|ZP_05457186.1| dimethyladenosine transferase [Brucella ceti M490/95/1]
 gi|256254702|ref|ZP_05460238.1| dimethyladenosine transferase [Brucella ceti B1/94]
 gi|256257202|ref|ZP_05462738.1| dimethyladenosine transferase [Brucella abortus bv. 9 str. C68]
 gi|256264290|ref|ZP_05466822.1| dimethyladenosine transferase [Brucella melitensis bv. 2 str. 63/9]
 gi|256369117|ref|YP_003106625.1| dimethyladenosine transferase [Brucella microti CCM 4915]
 gi|260168433|ref|ZP_05755244.1| dimethyladenosine transferase [Brucella sp. F5/99]
 gi|260545604|ref|ZP_05821345.1| dimethyladenosine transferase [Brucella abortus NCTC 8038]
 gi|260566739|ref|ZP_05837209.1| dimethyladenosine transferase [Brucella suis bv. 4 str. 40]
 gi|260754443|ref|ZP_05866791.1| dimethyladenosine transferase [Brucella abortus bv. 6 str. 870]
 gi|260757662|ref|ZP_05870010.1| dimethyladenosine transferase [Brucella abortus bv. 4 str. 292]
 gi|260761489|ref|ZP_05873832.1| dimethyladenosine transferase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260883472|ref|ZP_05895086.1| dimethyladenosine transferase [Brucella abortus bv. 9 str. C68]
 gi|261213689|ref|ZP_05927970.1| dimethyladenosine transferase [Brucella abortus bv. 3 str. Tulya]
 gi|261218950|ref|ZP_05933231.1| dimethyladenosine transferase [Brucella ceti M13/05/1]
 gi|261221882|ref|ZP_05936163.1| dimethyladenosine transferase [Brucella ceti B1/94]
 gi|261315104|ref|ZP_05954301.1| dimethyladenosine transferase [Brucella pinnipedialis M163/99/10]
 gi|261317341|ref|ZP_05956538.1| dimethyladenosine transferase [Brucella pinnipedialis B2/94]
 gi|261321551|ref|ZP_05960748.1| dimethyladenosine transferase [Brucella ceti M644/93/1]
 gi|261752008|ref|ZP_05995717.1| dimethyladenosine transferase [Brucella suis bv. 5 str. 513]
 gi|261754667|ref|ZP_05998376.1| dimethyladenosine transferase [Brucella suis bv. 3 str. 686]
 gi|261757895|ref|ZP_06001604.1| dimethyladenosine transferase [Brucella sp. F5/99]
 gi|265988379|ref|ZP_06100936.1| dimethyladenosine transferase [Brucella pinnipedialis M292/94/1]
 gi|265994629|ref|ZP_06107186.1| dimethyladenosine transferase [Brucella melitensis bv. 3 str.
           Ether]
 gi|265997845|ref|ZP_06110402.1| dimethyladenosine transferase [Brucella ceti M490/95/1]
 gi|297248052|ref|ZP_06931770.1| dimethyladenosine transferase [Brucella abortus bv. 5 str. B3196]
 gi|33516941|sp|Q8G1N0|RSMA_BRUSU RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|122064285|sp|Q2YN15|RSMA_BRUA2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|166221650|sp|A5VPL7|RSMA_BRUO2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|189028802|sp|A9MA55|RSMA_BRUC2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226729760|sp|B2S4U1|RSMA_BRUA1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|254807862|sp|C0RI23|RSMA_BRUMB RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|23347481|gb|AAN29611.1| dimethyladenosine transferase [Brucella suis 1330]
 gi|82615673|emb|CAJ10660.1| SAM (and some other nucleotide) binding motif:Ribosomal RNA adenine
           dimethylase [Brucella melitensis biovar Abortus 2308]
 gi|148371765|gb|ABQ61744.1| dimethyladenosine transferase [Brucella ovis ATCC 25840]
 gi|161335462|gb|ABX61767.1| dimethyladenosine transferase [Brucella canis ATCC 23365]
 gi|189019466|gb|ACD72188.1| SAM (and some other nucleotide) binding motif [Brucella abortus
           S19]
 gi|225618014|gb|EEH15058.1| dimethyladenosine transferase [Brucella ceti str. Cudo]
 gi|225640567|gb|ACO00481.1| dimethyladenosine transferase [Brucella melitensis ATCC 23457]
 gi|237789972|gb|EEP64182.1| dimethyladenosine transferase [Brucella abortus str. 2308 A]
 gi|255999277|gb|ACU47676.1| dimethyladenosine transferase [Brucella microti CCM 4915]
 gi|260097011|gb|EEW80886.1| dimethyladenosine transferase [Brucella abortus NCTC 8038]
 gi|260156257|gb|EEW91337.1| dimethyladenosine transferase [Brucella suis bv. 4 str. 40]
 gi|260667980|gb|EEX54920.1| dimethyladenosine transferase [Brucella abortus bv. 4 str. 292]
 gi|260671921|gb|EEX58742.1| dimethyladenosine transferase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260674551|gb|EEX61372.1| dimethyladenosine transferase [Brucella abortus bv. 6 str. 870]
 gi|260873000|gb|EEX80069.1| dimethyladenosine transferase [Brucella abortus bv. 9 str. C68]
 gi|260915296|gb|EEX82157.1| dimethyladenosine transferase [Brucella abortus bv. 3 str. Tulya]
 gi|260920466|gb|EEX87119.1| dimethyladenosine transferase [Brucella ceti B1/94]
 gi|260924039|gb|EEX90607.1| dimethyladenosine transferase [Brucella ceti M13/05/1]
 gi|261294241|gb|EEX97737.1| dimethyladenosine transferase [Brucella ceti M644/93/1]
 gi|261296564|gb|EEY00061.1| dimethyladenosine transferase [Brucella pinnipedialis B2/94]
 gi|261304130|gb|EEY07627.1| dimethyladenosine transferase [Brucella pinnipedialis M163/99/10]
 gi|261737879|gb|EEY25875.1| dimethyladenosine transferase [Brucella sp. F5/99]
 gi|261741761|gb|EEY29687.1| dimethyladenosine transferase [Brucella suis bv. 5 str. 513]
 gi|261744420|gb|EEY32346.1| dimethyladenosine transferase [Brucella suis bv. 3 str. 686]
 gi|262552313|gb|EEZ08303.1| dimethyladenosine transferase [Brucella ceti M490/95/1]
 gi|262765742|gb|EEZ11531.1| dimethyladenosine transferase [Brucella melitensis bv. 3 str.
           Ether]
 gi|263094550|gb|EEZ18359.1| dimethyladenosine transferase [Brucella melitensis bv. 2 str. 63/9]
 gi|264660576|gb|EEZ30837.1| dimethyladenosine transferase [Brucella pinnipedialis M292/94/1]
 gi|297175221|gb|EFH34568.1| dimethyladenosine transferase [Brucella abortus bv. 5 str. B3196]
 gi|326408701|gb|ADZ65766.1| SAM (and some other nucleotide) binding motif protein [Brucella
           melitensis M28]
 gi|326538425|gb|ADZ86640.1| dimethyladenosine transferase [Brucella melitensis M5-90]
          Length = 276

 Score = 37.9 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 19/45 (42%)

Query: 46  GAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQA 90
           G GG +R+    G+ V A++RD   +    E    Y  +  +   
Sbjct: 56  GPGGLTRALLAQGAYVTAIERDDRCLEALAEIAAHYPGRLRIIAG 100


>gi|62289644|ref|YP_221437.1| dimethyladenosine transferase [Brucella abortus bv. 1 str. 9-941]
 gi|81309439|sp|Q57E58|RSMA_BRUAB RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|62195776|gb|AAX74076.1| KsgA, dimethyladenosine transferase [Brucella abortus bv. 1 str.
           9-941]
          Length = 276

 Score = 37.9 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 19/45 (42%)

Query: 46  GAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQA 90
           G GG +R+    G+ V A++RD   +    E    Y  +  +   
Sbjct: 56  GPGGLTRALLAQGAYVTAIERDDRCLEALAEIAAHYPGRLRIIAG 100


>gi|39936129|ref|NP_948405.1| dimethyladenosine transferase [Rhodopseudomonas palustris CGA009]
 gi|192291847|ref|YP_001992452.1| dimethyladenosine transferase [Rhodopseudomonas palustris TIE-1]
 gi|62900541|sp|Q6N5B4|RSMA_RHOPA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|226732615|sp|B3Q9S4|RSMA_RHOPT RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|39649983|emb|CAE28507.1| dimethyladenosine transferase [Rhodopseudomonas palustris CGA009]
 gi|192285596|gb|ACF01977.1| dimethyladenosine transferase [Rhodopseudomonas palustris TIE-1]
          Length = 287

 Score = 37.9 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 46  GAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ 96
           G GG +R+    G+  VIA++RD  A+   +E    Y  +  +      +  
Sbjct: 57  GPGGLTRALLATGAKRVIAIERDERALGALEEIAAHYPGRLDIISGDAMEFD 108


>gi|17987550|ref|NP_540184.1| dimethyladenosine transferase [Brucella melitensis bv. 1 str. 16M]
 gi|256044375|ref|ZP_05447279.1| dimethyladenosine transferase [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|260563727|ref|ZP_05834213.1| dimethyladenosine transferase [Brucella melitensis bv. 1 str. 16M]
 gi|265990793|ref|ZP_06103350.1| dimethyladenosine transferase [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|27151583|sp|Q8YG94|RSMA_BRUME RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|17983253|gb|AAL52448.1| dimethyladenosine transferase [Brucella melitensis bv. 1 str. 16M]
 gi|260153743|gb|EEW88835.1| dimethyladenosine transferase [Brucella melitensis bv. 1 str. 16M]
 gi|263001577|gb|EEZ14152.1| dimethyladenosine transferase [Brucella melitensis bv. 1 str.
           Rev.1]
          Length = 276

 Score = 37.9 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 19/45 (42%)

Query: 46  GAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQA 90
           G GG +R+    G+ V A++RD   +    E    Y  +  +   
Sbjct: 56  GPGGLTRALLAQGAYVTAIERDDRCLEALAEIAAHYPGRLRIIAG 100


>gi|302036875|ref|YP_003797197.1| putative dihydroneopterin aldolase and SAM-dependent
           methyltransferase [Candidatus Nitrospira defluvii]
 gi|190343289|gb|ACE75677.1| putative dihydroneopterin aldolase/SAM-dependent methyltransferase
           [Candidatus Nitrospira defluvii]
 gi|300604939|emb|CBK41272.1| putative Dihydroneopterin aldolase and SAM-dependent
           methyltransferase (modular protein) [Candidatus
           Nitrospira defluvii]
          Length = 309

 Score = 37.9 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 22/49 (44%)

Query: 32  LNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRD 80
           L   P   +LD   G G ++      G  V A+DRD  A++  +E   +
Sbjct: 136 LGRLPKGRVLDVAAGRGRHALHLLSHGMEVEAIDRDSLALTALKEAAEE 184


>gi|156937691|ref|YP_001435487.1| Fmu (Sun) domain-containing protein [Ignicoccus hospitalis KIN4/I]
 gi|156566675|gb|ABU82080.1| Fmu (Sun) domain protein [Ignicoccus hospitalis KIN4/I]
          Length = 385

 Score = 37.9 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 3/67 (4%)

Query: 33  NPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQ 89
              P  +++D     GG   ++    +    VIA D     +S   E MR     F + +
Sbjct: 200 ALEPEGLVVDMNAAPGGKAFHAYELLRGKGKVIAFDISKKRISKMMEEMRRLGHSFEVVR 259

Query: 90  ATFSQLQ 96
           A    L 
Sbjct: 260 ADSRYLD 266


>gi|21242447|ref|NP_642029.1| biotin synthesis protein [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21107892|gb|AAM36565.1| biotin synthesis protein [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 232

 Score = 37.9 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 43/104 (41%), Gaps = 9/104 (8%)

Query: 15  HTIGDHVPVLLEKVIALLNPAP----GKVILDATFGAGGYSRSFCKMGSN-VIALDRDPF 69
           +    H PV+L +  A+L   P    G+ +LDA  G+G Y     + G+  V  +D  P 
Sbjct: 20  YPPHAHNPVMLAEERAMLALMPSSLQGQHVLDAGCGSGRYMLHALRRGARQVTGVDLSPQ 79

Query: 70  AVSCGQETMRD--YKEQFSLFQATFSQ--LQDYVPDKGVDGVVF 109
            +      +       +  L Q +  Q  L D V D  V G+V 
Sbjct: 80  MLHRAGAELAQDWPAARIVLQQGSLDQLPLADTVADLSVCGLVL 123


>gi|14590866|ref|NP_142938.1| hypothetical protein PH1028 [Pyrococcus horikoshii OT3]
 gi|3257442|dbj|BAA30125.1| 281aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 281

 Score = 37.9 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 4/86 (4%)

Query: 29  IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCG----QETMRDYKEQ 84
           +  + P  G+V+LD   G G  +    K G+ VI +++DP  +                +
Sbjct: 118 VNTVKPREGEVVLDTCMGLGYTAIESAKRGARVITIEKDPNVIELAKINPWSRELFESPK 177

Query: 85  FSLFQATFSQLQDYVPDKGVDGVVFD 110
             + Q     L     D+  D ++ D
Sbjct: 178 IKILQGDSFDLIKKFEDESFDVIIHD 203


>gi|330444964|ref|ZP_08308618.1| ribosomal protein L11 methyltransferase [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328493082|dbj|GAA03115.1| ribosomal protein L11 methyltransferase [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 294

 Score = 37.9 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 15/89 (16%)

Query: 28  VIALLNPAP--GKVILDATFGAGGYSRSF--CKMGS-NVIALDRDPFAVSCGQETMRDYK 82
            +  L+     GK I+D  FG G    +    K+G+  VI +D DP A+   ++      
Sbjct: 149 CLEWLDGQDLTGKTIID--FGCGSGILAIAALKLGAAKVIGIDIDPQAILASRDNAER-- 204

Query: 83  EQFSLFQATFSQLQDYVPDKGVDGVVFDL 111
                       L+ Y+P    +G+  D+
Sbjct: 205 ------NGVSENLELYLPKDQPEGIQADI 227


>gi|315635055|ref|ZP_07890336.1| RNA methyltransferase Sun [Aggregatibacter segnis ATCC 33393]
 gi|315476317|gb|EFU67068.1| RNA methyltransferase Sun [Aggregatibacter segnis ATCC 33393]
          Length = 453

 Score = 37.9 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 2/82 (2%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88
           LL P   +VILDA    GG +    ++    +V+ALD +   +   +E +   ++Q ++ 
Sbjct: 250 LLQPQNHEVILDACAAPGGKTTHILELAPQADVMALDVEENRLQRVKENLARMQQQATVV 309

Query: 89  QATFSQLQDYVPDKGVDGVVFD 110
               +  Q ++   G   V FD
Sbjct: 310 CGDAANPQAWLDKLGKSAVRFD 331


>gi|28316390|dbj|BAC56939.1| glycine sarcosine N-methyltransferase [Aphanothece halophytica]
          Length = 265

 Score = 37.9 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 38/96 (39%), Gaps = 3/96 (3%)

Query: 29  IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLF 88
           I  L     K +LDA  G G +S    + G +V ++D     +    E      +     
Sbjct: 54  IKTLKEHGAKRVLDAATGTGFHSIRLIEAGFDVASVDGSVEMLVKAFENATRKDQILRTV 113

Query: 89  QATFSQLQDYVPDKGVDGVVFDLGVS-SMQIDCGDR 123
            + + Q+  ++ ++  D V+  LG S +      DR
Sbjct: 114 HSDWRQVTRHIQER-FDAVIC-LGNSFTHLFSEEDR 147


>gi|317507641|ref|ZP_07965353.1| methyltransferase domain-containing protein [Segniliparus rugosus
           ATCC BAA-974]
 gi|316254078|gb|EFV13436.1| methyltransferase domain-containing protein [Segniliparus rugosus
           ATCC BAA-974]
          Length = 200

 Score = 37.9 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 35/102 (34%), Gaps = 5/102 (4%)

Query: 25  LEKVIALLNPAPG---KVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81
           L +++      P       LD   G G  +    + G  V  +D  P A+   +      
Sbjct: 28  LAELVDGDGERPALAPGRALDVGCGTGDAAIYLARRGWRVTGVDFTPKALRLARRKAASA 87

Query: 82  KEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDR 123
                   A  ++L++     G D +V D G+    +D   R
Sbjct: 88  GADIDFVHADVTKLRENGLQPGFDLIV-DFGLL-HGVDDKTR 127


>gi|299531915|ref|ZP_07045315.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Comamonas
           testosteroni S44]
 gi|298720090|gb|EFI61047.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Comamonas
           testosteroni S44]
          Length = 475

 Score = 37.9 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 45/136 (33%), Gaps = 17/136 (12%)

Query: 50  YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVF 109
           ++R              D    +   + + DYK +    QATF QL       G      
Sbjct: 332 HARHILLTVG-------DGMTEAQAAKRLEDYKRRVEAGQATFQQLAQEFSKDGSARNGG 384

Query: 110 DLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVK--DLTRILGILGEEK 167
           DLG SS      +          L+      G  ++ VV++  V    L         E+
Sbjct: 385 DLGWSSPGQFVPE------FERVLENL--QPGQISNPVVSRFGVHLIQLIERRQEKLTER 436

Query: 168 QASRIAHAIVKRRQSA 183
           +   +   +V+ R++ 
Sbjct: 437 EQREMVRNVVRERKAE 452


>gi|270157755|ref|ZP_06186412.1| ribosomal RNA small subunit methyltransferase B [Legionella
           longbeachae D-4968]
 gi|289163976|ref|YP_003454114.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Legionella
           longbeachae NSW150]
 gi|269989780|gb|EEZ96034.1| ribosomal RNA small subunit methyltransferase B [Legionella
           longbeachae D-4968]
 gi|288857149|emb|CBJ10965.1| 16S rRNA m5C967 methyltransferase,
           S-adenosyl-L-methionine-dependent [Legionella
           longbeachae NSW150]
          Length = 458

 Score = 37.9 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 3/87 (3%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCGQETMRDYKEQFSL 87
           LL+  PG  +LDA    GG +    +   ++   +A+D D   +   +E +       +L
Sbjct: 263 LLSLKPGLRVLDACCAPGGKTCHILEKEPHLAECVAVDIDSKRLDRVRENLNRLHLHATL 322

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGVS 114
            Q   S    +   K  D ++ D   S
Sbjct: 323 LQGDASNPSQWWDGKLFDRILLDAPCS 349


>gi|227510589|ref|ZP_03940638.1| rRNA methylase [Lactobacillus brevis subsp. gravesensis ATCC 27305]
 gi|227190241|gb|EEI70308.1| rRNA methylase [Lactobacillus brevis subsp. gravesensis ATCC 27305]
          Length = 191

 Score = 37.9 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 42/112 (37%), Gaps = 14/112 (12%)

Query: 9   MSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALD 65
           M+   +     H   LL++ ++      G  ++D T G G  +    K+      V   D
Sbjct: 1   MNQLPNALQFSHQ--LLKEAVS-----TGDQVIDGTIGNGNDTLLLAKLVGENGTVYGFD 53

Query: 66  RDPFAVSCGQETMRDYKE---QFSLFQATFSQLQDYVPDK-GVDGVVFDLGV 113
               A+      ++          L++ + +++ + + D   +   +F+LG 
Sbjct: 54  IQQQALQHTISLLKKNLSSLQNVQLYKKSHAEIDNILDDNVRISAAIFNLGY 105


>gi|126651273|ref|ZP_01723480.1| SAM-dependent methyltransferase [Bacillus sp. B14905]
 gi|126591802|gb|EAZ85885.1| SAM-dependent methyltransferase [Bacillus sp. B14905]
          Length = 192

 Score = 37.9 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 13/96 (13%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMR 79
           LL+  +       G  ++DAT G  G+   F          V A D    AV      + 
Sbjct: 13  LLKDSVE-----EGDAVVDATAGN-GHDTLFLAQLVGDEGQVYAFDVQKEAVDATLHRLL 66

Query: 80  DYK--EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
           D+    +  +      ++ ++V    V   +F+LG 
Sbjct: 67  DHGLEHRVLVLNKGHEEVANFVHK-KVAAAIFNLGY 101


>gi|332139428|ref|YP_004425166.1| 16S rRNA methyltransferase B [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327549450|gb|AEA96168.1| 16S rRNA methyltransferase B [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 439

 Score = 37.9 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 3/88 (3%)

Query: 30  ALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETMRDYKEQFS 86
             L P   + ILD     GG +    +   +   V+ALD D   +   +E M   + +  
Sbjct: 244 HYLQPQANERILDCCAAPGGKTGHIVECAPDTEYVLALDADATRLKRVEENMTRLQHKVD 303

Query: 87  LFQATFSQLQDYVPDKGVDGVVFDLGVS 114
           + Q   +  + +   K  D ++ D   S
Sbjct: 304 IRQGDAANPESWWDGKPFDRILLDAPCS 331


>gi|225022944|ref|ZP_03712136.1| hypothetical protein CORMATOL_02990 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305681942|ref|ZP_07404746.1| putative site-specific DNA-methyltransferase (adenine-specific)
           [Corynebacterium matruchotii ATCC 14266]
 gi|224944167|gb|EEG25376.1| hypothetical protein CORMATOL_02990 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305658415|gb|EFM47918.1| putative site-specific DNA-methyltransferase (adenine-specific)
           [Corynebacterium matruchotii ATCC 14266]
          Length = 571

 Score = 37.9 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 20/49 (40%)

Query: 60  NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVV 108
            +I  D D  AV   +  +RD      + Q  F   Q  +P   VD ++
Sbjct: 73  KLIGYDIDAAAVEQARARLRDVNRDAQVIQGDFLLHQRNLPTHSVDIII 121


>gi|23010583|ref|ZP_00051221.1| COG0030: Dimethyladenosine transferase (rRNA methylation)
          [Magnetospirillum magnetotacticum MS-1]
          Length = 263

 Score = 37.9 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 46 GAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSLF 88
          G GG +R+    G+  V+A++RDP A+    E    Y  +  + 
Sbjct: 34 GPGGLTRALLAAGAQRVVAIERDPRALPALAEIAAHYPGRLDVI 77


>gi|193786198|dbj|BAG51481.1| unnamed protein product [Homo sapiens]
          Length = 566

 Score = 37.9 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 2/61 (3%)

Query: 46  GAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQDYVPDKG 103
           G GG +  F   G  VIA+D DP  ++  +     Y   ++       F  L  ++    
Sbjct: 413 GVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADV 472

Query: 104 V 104
           V
Sbjct: 473 V 473


>gi|154253151|ref|YP_001413975.1| type 11 methyltransferase [Parvibaculum lavamentivorans DS-1]
 gi|154157101|gb|ABS64318.1| Methyltransferase type 11 [Parvibaculum lavamentivorans DS-1]
          Length = 219

 Score = 37.9 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 35/98 (35%), Gaps = 12/98 (12%)

Query: 21  VPVLLEK------VIALLNPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFA 70
           + V+  +      V+  L    G+ ++D   GAG  S++        G  +I +D DP  
Sbjct: 23  IAVMTREKRWRPLVVNALALQTGETVVD--IGAGTGSQAILLKQAVPGIRIIGIDPDPDV 80

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVV 108
           ++  +        +    Q    +       +  D VV
Sbjct: 81  LAIARAKAEAAAVEVDWRQGFGDEADQIAGSEIADAVV 118


>gi|75910273|ref|YP_324569.1| MerR family transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|75703998|gb|ABA23674.1| putative MerR-family transcriptional regulator [Anabaena variabilis
           ATCC 29413]
          Length = 260

 Score = 37.9 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 84/224 (37%), Gaps = 19/224 (8%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84
           +  +I LLN   G VI D   G GGYS +    G  V A++  P  V   Q  +    E 
Sbjct: 22  VNAIINLLNLPKGSVIADIGAGTGGYSVALANQGLFVYAVE--PSIVMRQQAVVHPQVEW 79

Query: 85  FSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ------KSGPLDMRMS 138
           F+ +    +     +PDK VDGV+  L +        ++  SFQ      + G + +   
Sbjct: 80  FTGYAENLA-----LPDKSVDGVISILAI--HHFSHLEK--SFQEMQRIIRDGTIVLLTF 130

Query: 139 CSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198
              ++    +           L  L  ++Q + +     +R ++ PF    DLS L    
Sbjct: 131 DIRLAQRIWLYDYFPFLWEDALRFLPLDEQINLLQENTKRRVEAIPFLLPHDLSDLFAAA 190

Query: 199 VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAG 242
            +      +    R+  +     N ++  + +GL      L  G
Sbjct: 191 AWRRPELYLKAEVRAGISSFALANQDL--VEKGLELLTADLNNG 232


>gi|293570978|ref|ZP_06682021.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           E980]
 gi|291608904|gb|EFF38183.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           E980]
          Length = 460

 Score = 37.9 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 21/99 (21%)

Query: 24  LLEKVIALLNPAPGKVILD-----ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETM 78
           L  + I  L+  P + I+D      T G      S  K    V  +D  P A++  ++  
Sbjct: 300 LYGEGIKALDVQPNETIVDAYCGVGTIG-----LSVAKQAKEVRGMDTVPQAIADAKKN- 353

Query: 79  RDYKEQFSLFQATF--SQLQDYVPDK-----GVDGVVFD 110
               E+       +     +  +P         DG++ D
Sbjct: 354 ---AERLGYHNTRYEVGTAEQVLPKWLNEGFQPDGIIVD 389


>gi|293553261|ref|ZP_06673898.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           E1039]
 gi|291602671|gb|EFF32886.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           E1039]
          Length = 460

 Score = 37.9 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 21/99 (21%)

Query: 24  LLEKVIALLNPAPGKVILD-----ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETM 78
           L  + I  L+  P + I+D      T G      S  K    V  +D  P A++  ++  
Sbjct: 300 LYGEGIKALDVQPNETIVDAYCGVGTIG-----LSVAKQAKEVRGMDTVPQAIADAKKN- 353

Query: 79  RDYKEQFSLFQATF--SQLQDYVPDK-----GVDGVVFD 110
               E+       +     +  +P         DG++ D
Sbjct: 354 ---AERLGYHNTRYEVGTAEQVLPKWLNEGFQPDGIIVD 389


>gi|294619066|ref|ZP_06698561.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           E1679]
 gi|291594727|gb|EFF26109.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           E1679]
          Length = 460

 Score = 37.9 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 21/99 (21%)

Query: 24  LLEKVIALLNPAPGKVILD-----ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETM 78
           L  + I  L+  P + I+D      T G      S  K    V  +D  P A++  ++  
Sbjct: 300 LYGEGIKALDVQPNETIVDAYCGVGTIG-----LSVAKQAKEVRGMDTVPQAIADAKKN- 353

Query: 79  RDYKEQFSLFQATF--SQLQDYVPDK-----GVDGVVFD 110
               E+       +     +  +P         DG++ D
Sbjct: 354 ---AERLGYHNTRYEVGTAEQVLPKWLNEGFQPDGIIVD 389


>gi|126657694|ref|ZP_01728848.1| ribosomal protein L11 methyltransferase [Cyanothece sp. CCY0110]
 gi|126620911|gb|EAZ91626.1| ribosomal protein L11 methyltransferase [Cyanothece sp. CCY0110]
          Length = 299

 Score = 37.9 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 4/59 (6%)

Query: 53  SFCKMGSNVIALDRDPFAVSCGQETM---RDYKEQFSLFQATFSQLQDYVPDKGVDGVV 108
           +     S   A+D DP AV   +E     + + +   + Q + S+L + V D GVDG+V
Sbjct: 173 AILLGASKAYAVDIDPLAVKAARENRHLNQIHPDHLVINQGSLSELLELVND-GVDGIV 230


>gi|69248258|ref|ZP_00604692.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium DO]
 gi|257880209|ref|ZP_05659862.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
           1,230,933]
 gi|257883010|ref|ZP_05662663.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
           1,231,502]
 gi|257891407|ref|ZP_05671060.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
           1,231,410]
 gi|257893596|ref|ZP_05673249.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
           1,231,408]
 gi|258614397|ref|ZP_05712167.1| RNA methyltransferase [Enterococcus faecium DO]
 gi|260560493|ref|ZP_05832667.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium C68]
 gi|289565178|ref|ZP_06445630.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           D344SRF]
 gi|293563312|ref|ZP_06677762.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           E1162]
 gi|293569307|ref|ZP_06680605.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           E1071]
 gi|294614976|ref|ZP_06694865.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           E1636]
 gi|294621465|ref|ZP_06700634.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           U0317]
 gi|314939803|ref|ZP_07847023.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           TX0133a04]
 gi|314943901|ref|ZP_07850627.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           TX0133C]
 gi|314949998|ref|ZP_07853291.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           TX0082]
 gi|314953520|ref|ZP_07856432.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           TX0133A]
 gi|314994278|ref|ZP_07859580.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           TX0133B]
 gi|314995146|ref|ZP_07860262.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           TX0133a01]
 gi|68194473|gb|EAN08972.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium DO]
 gi|257814437|gb|EEV43195.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
           1,230,933]
 gi|257818668|gb|EEV45996.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
           1,231,502]
 gi|257827767|gb|EEV54393.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
           1,231,410]
 gi|257829975|gb|EEV56582.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
           1,231,408]
 gi|260073495|gb|EEW61823.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium C68]
 gi|289162999|gb|EFD10847.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           D344SRF]
 gi|291588013|gb|EFF19863.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           E1071]
 gi|291592107|gb|EFF23727.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           E1636]
 gi|291598959|gb|EFF30007.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           U0317]
 gi|291604764|gb|EFF34248.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           E1162]
 gi|313590637|gb|EFR69482.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           TX0133a01]
 gi|313591313|gb|EFR70158.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           TX0133B]
 gi|313594443|gb|EFR73288.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           TX0133A]
 gi|313597442|gb|EFR76287.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           TX0133C]
 gi|313640943|gb|EFS05523.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           TX0133a04]
 gi|313643645|gb|EFS08225.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           TX0082]
          Length = 460

 Score = 37.9 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 21/99 (21%)

Query: 24  LLEKVIALLNPAPGKVILD-----ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETM 78
           L  + I  L+  P + I+D      T G      S  K    V  +D  P A++  ++  
Sbjct: 300 LYGEGIKALDVQPNETIVDAYCGVGTIG-----LSVAKQAKEVRGMDTVPQAIADAKKN- 353

Query: 79  RDYKEQFSLFQATF--SQLQDYVPDK-----GVDGVVFD 110
               E+       +     +  +P         DG++ D
Sbjct: 354 ---AERLGYHNTRYEVGTAEQVLPKWLNEGFQPDGIIVD 389


>gi|315023501|gb|EFT36507.1| ribosomal RNA small subunit methyltransferase B [Riemerella
           anatipestifer RA-YM]
          Length = 402

 Score = 37.9 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 7/91 (7%)

Query: 30  ALLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFS 86
             L    G  ++DA  GAGG   +  +  K    +IALD   + ++  +   +       
Sbjct: 218 HFLEVKEGMRVVDACAGAGGKTLHIAALMKNKGQIIALDIFEWKLAELKRRAKRAGA--H 275

Query: 87  LFQATFSQLQDYVPD--KGVDGVVFDLGVSS 115
             +  F +    +    +  D ++ D+  S 
Sbjct: 276 NIETRFIEDNKVIKRLHEKADRLLLDVPCSG 306


>gi|313207277|ref|YP_004046454.1| fmu (sun) domain protein [Riemerella anatipestifer DSM 15868]
 gi|312446593|gb|ADQ82948.1| Fmu (Sun) domain protein [Riemerella anatipestifer DSM 15868]
          Length = 402

 Score = 37.9 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 7/91 (7%)

Query: 30  ALLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFS 86
             L    G  ++DA  GAGG   +  +  K    +IALD   + ++  +   +       
Sbjct: 218 HFLEVKEGMRVVDACAGAGGKTLHIAALMKNKGQIIALDIFEWKLAELKRRAKRAGA--H 275

Query: 87  LFQATFSQLQDYVPD--KGVDGVVFDLGVSS 115
             +  F +    +    +  D ++ D+  S 
Sbjct: 276 NIETRFIEDNKVIKRLHEKADRLLLDVPCSG 306


>gi|114763426|ref|ZP_01442833.1| protein-L-isoaspartate O-methyltransferase [Pelagibaca bermudensis
           HTCC2601]
 gi|114543964|gb|EAU46975.1| protein-L-isoaspartate O-methyltransferase [Roseovarius sp.
           HTCC2601]
          Length = 216

 Score = 37.9 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 47/108 (43%), Gaps = 14/108 (12%)

Query: 25  LEKVIALLNPAPGKVILDATFGAG-GYSRS-FCKMGSNVIALDRDPFAVSCGQETMRDYK 82
           L K++  +N     ++LD   GAG GYS +   ++   V+A++ D    S  Q  + ++ 
Sbjct: 67  LAKMLDAVNIDNDDLVLD--IGAGFGYSSAVIARIAEAVVAVEEDEAFTSEAQSLLVEHG 124

Query: 83  EQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVS------SMQIDCGDR 123
           +     +     L     + G  D +V + GV+      + Q+  G R
Sbjct: 125 DNVVFHEG---ALAQGAAEHGPYDAIVIEGGVAQLPEEITAQLKDGGR 169


>gi|170718224|ref|YP_001785246.1| sun protein [Haemophilus somnus 2336]
 gi|168826353|gb|ACA31724.1| sun protein [Haemophilus somnus 2336]
          Length = 462

 Score = 37.9 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 3/92 (3%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQFSLF 88
           LL P   ++ILDA    GG +    +   N  VIALD +P  +   +E +   K+Q  + 
Sbjct: 255 LLEPENDELILDACAAPGGKTTHILEQAPNAKVIALDIEPARLQRVKENLVRMKQQAIII 314

Query: 89  QATFSQLQDYVPDKGVDGVVFDLGV-SSMQID 119
               +Q + ++ +   + +       S++Q D
Sbjct: 315 CGDATQPEQWLSEIDFNAIGLTFKSESAVQFD 346


>gi|326629015|gb|EGE35358.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
          Length = 437

 Score = 37.9 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 3/90 (3%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET-MRDYK 82
           ++ + +  L+      +LD   G G ++       ++VI ++  P  V  G+E  +R+  
Sbjct: 279 MVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVIGVEGVPALVEKGRENAIRNGL 338

Query: 83  EQFSLFQATFSQ--LQDYVPDKGVDGVVFD 110
              + F     +   +      G D V+ D
Sbjct: 339 HNVTFFHENLEEDVTKQPWAKNGFDKVLLD 368


>gi|326624695|gb|EGE31040.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
          Length = 437

 Score = 37.9 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 3/90 (3%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET-MRDYK 82
           ++ + +  L+      +LD   G G ++       ++VI ++  P  V  G+E  +R+  
Sbjct: 279 MVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVIGVEGVPALVEKGRENAIRNGL 338

Query: 83  EQFSLFQATFSQ--LQDYVPDKGVDGVVFD 110
              + F     +   +      G D V+ D
Sbjct: 339 HNVTFFHENLEEEVTKQPWAKNGFDKVLLD 368


>gi|323131314|gb|ADX18744.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
          Length = 437

 Score = 37.9 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 3/90 (3%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET-MRDYK 82
           ++ + +  L+      +LD   G G ++       ++VI ++  P  V  G+E  +R+  
Sbjct: 279 MVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVIGVEGVPALVEKGRENAIRNGL 338

Query: 83  EQFSLFQATFSQ--LQDYVPDKGVDGVVFD 110
              + F     +   +      G D V+ D
Sbjct: 339 HNVTFFHENLEEDVTKQPWAKNGFDKVLLD 368


>gi|258592639|emb|CBE68948.1| Sun protein [NC10 bacterium 'Dutch sediment']
          Length = 467

 Score = 37.9 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 32/102 (31%), Positives = 43/102 (42%), Gaps = 19/102 (18%)

Query: 22  PVLLEKVIALLNPAPGKVILDATFGAGGYS---RSFCKMGSNVIALDRDPFAVSCGQETM 78
           PVL      +LNP PG V+LDA  G GG +            VIAL  DP A       +
Sbjct: 263 PVL------MLNPQPGDVVLDACSGGGGKTALLLGRLGGQGRVIAL--DPSAR--AHRRL 312

Query: 79  RDYKEQFSL-----FQATFSQLQDYVPDKGVDGVVFDLGVSS 115
           R+ + + SL      QA   Q    +  + VD ++ D   S 
Sbjct: 313 REARTRLSLDRVFPVQADARQAAQ-LFTRQVDRILVDAPCSG 353


>gi|295676911|ref|YP_003605435.1| hypothetical protein BC1002_1861 [Burkholderia sp. CCGE1002]
 gi|295436754|gb|ADG15924.1| conserved hypothetical protein [Burkholderia sp. CCGE1002]
          Length = 200

 Score = 37.9 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 23/38 (60%)

Query: 34 PAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAV 71
           APG  +LD   GAG ++R F  +G  V A+DRD  A+
Sbjct: 26 IAPGGAVLDVASGAGRHARFFASLGHPVTAIDRDAAAL 63


>gi|197247468|ref|YP_002147867.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197211171|gb|ACH48568.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
          Length = 431

 Score = 37.9 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 3/90 (3%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET-MRDYK 82
           ++ + +  L+      +LD   G G ++       ++VI ++  P  V  G+E  +R+  
Sbjct: 273 MVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVIGVEGVPALVEKGRENAIRNGL 332

Query: 83  EQFSLFQATFSQ--LQDYVPDKGVDGVVFD 110
              + F     +   +      G D V+ D
Sbjct: 333 HNVTFFHENLEEDVTKQPWAKNGFDKVLLD 362


>gi|254245217|ref|ZP_04938539.1| hypothetical protein PA2G_06108 [Pseudomonas aeruginosa 2192]
 gi|126198595|gb|EAZ62658.1| hypothetical protein PA2G_06108 [Pseudomonas aeruginosa 2192]
          Length = 450

 Score = 37.9 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 56/162 (34%), Gaps = 23/162 (14%)

Query: 22  PV---LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET- 77
           PV   ++ + +  L P   + +LD   G G +S    +  + V+ ++     V       
Sbjct: 287 PVNESMIRQALDWLAPTADERVLDLFCGLGNFSLPLARRVARVVGVEGVAAMVERAGANA 346

Query: 78  MRDYKEQFSLFQATFSQ-LQDYV-PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           + +       FQA  S+ L + +  ++G   V+ D            R       G  + 
Sbjct: 347 LANGLGNAHFFQADLSKALAEALWAEQGFTAVLLD----------PPR------DGAFEA 390

Query: 136 RMSCSGISASDVVN-QANVKDLTRILGILGEEKQASRIAHAI 176
               S + A  VV    N   L R  G +  +    + A  +
Sbjct: 391 VREMSSLGARRVVYVSCNPATLARDAGEMARQGYRLKRAGIL 432


>gi|57238485|ref|YP_179616.1| site-specific DNA methyltransferase, putative [Campylobacter jejuni
           RM1221]
 gi|86151925|ref|ZP_01070138.1| site-specific DNA methyltransferase, putative [Campylobacter jejuni
           subsp. jejuni 260.94]
 gi|57167289|gb|AAW36068.1| site-specific DNA methyltransferase, putative [Campylobacter jejuni
           RM1221]
 gi|85841033|gb|EAQ58282.1| site-specific DNA methyltransferase, putative [Campylobacter jejuni
           subsp. jejuni 260.94]
          Length = 228

 Score = 37.9 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 12/92 (13%), Positives = 30/92 (32%), Gaps = 10/92 (10%)

Query: 51  SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFD 110
           + +         A++ D  A     E  ++      +  A   ++   + +   + ++  
Sbjct: 101 AEALSNHALKAYAIELDAKAYKIALENAKNIDPNLEVIHANTFEILPKLIENSKNEIILY 160

Query: 111 LGVSSMQIDCGDRGFS------FQKSGPLDMR 136
           L       D  + GFS      +     LD++
Sbjct: 161 LD---PPFDTRE-GFSDIYEKIYHFLENLDLK 188


>gi|326407755|gb|ADZ64826.1| uracil-5-23S rRNA methyltransferase RumA [Lactococcus lactis subsp.
           lactis CV56]
          Length = 513

 Score = 37.9 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 30/89 (33%), Gaps = 12/89 (13%)

Query: 23  VLLEKVIALLNPAPGKVILD-----ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77
           VL  + +  LNP     ++D      T G      +  K   +V  +D  P ++   +E 
Sbjct: 317 VLYGEAVKALNPKKDDRVIDAYCGVGTIGF-----AVAKKVKSVHGMDITPESIFDAREN 371

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGVDG 106
            +              + +  +P+    G
Sbjct: 372 AKRLG--LKNCHYEIGKAERIIPNWNKSG 398


>gi|254282952|ref|ZP_04957920.1| ribosomal RNA small subunit methyltransferase B [gamma
           proteobacterium NOR51-B]
 gi|219679155|gb|EED35504.1| ribosomal RNA small subunit methyltransferase B [gamma
           proteobacterium NOR51-B]
          Length = 416

 Score = 37.9 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 30/87 (34%), Gaps = 3/87 (3%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGSNV---IALDRDPFAVSCGQETMRDYKEQFSL 87
           LL+  PG+ +LDA    GG S    +    +   IA D D   +             F  
Sbjct: 222 LLDAKPGETVLDACAAPGGKSCHIAERQPELKTLIAADIDAKRLEKVIANRDRLGLGFDC 281

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGVS 114
                +   D +     D +V D+  S
Sbjct: 282 IAMDAAHPGDELGVGRFDAIVADVPCS 308


>gi|315124898|ref|YP_004066902.1| site-specific DNA methyltransferase, putative [Campylobacter jejuni
           subsp. jejuni ICDCCJ07001]
 gi|315018620|gb|ADT66713.1| site-specific DNA methyltransferase, putative [Campylobacter jejuni
           subsp. jejuni ICDCCJ07001]
 gi|315058916|gb|ADT73245.1| Site-specific DNA methyltransferase [Campylobacter jejuni subsp.
           jejuni S3]
          Length = 227

 Score = 37.9 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 12/92 (13%), Positives = 30/92 (32%), Gaps = 10/92 (10%)

Query: 51  SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFD 110
           + +         A++ D  A     E  ++      +  A   ++   + +   + ++  
Sbjct: 100 AEALSNHALKAYAIELDAKAYKIALENAKNIDPNLEVIHANTFEILPKLIENSKNEIILY 159

Query: 111 LGVSSMQIDCGDRGFS------FQKSGPLDMR 136
           L       D  + GFS      +     LD++
Sbjct: 160 LD---PPFDTRE-GFSDIYEKIYHFLENLDLK 187


>gi|205356106|ref|ZP_03222873.1| possible DNA methylase [Campylobacter jejuni subsp. jejuni CG8421]
 gi|205345949|gb|EDZ32585.1| possible DNA methylase [Campylobacter jejuni subsp. jejuni CG8421]
          Length = 228

 Score = 37.9 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 12/92 (13%), Positives = 30/92 (32%), Gaps = 10/92 (10%)

Query: 51  SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFD 110
           + +         A++ D  A     E  ++      +  A   ++   + +   + ++  
Sbjct: 101 AEALSNHALKAYAIELDVKAYKIALENAKNIDPNLEVIHANTFEILPKLIENSKNEIILY 160

Query: 111 LGVSSMQIDCGDRGFS------FQKSGPLDMR 136
           L       D  + GFS      +     LD++
Sbjct: 161 LD---PPFDTRE-GFSDIYEKIYHFLENLDLK 188


>gi|323450126|gb|EGB06009.1| hypothetical protein AURANDRAFT_16878 [Aureococcus
          anophagefferens]
          Length = 101

 Score = 37.9 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 37 GKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLF 88
          G+V++DA  G GG + +    G+ V+A+D D   +   +     Y   ++    
Sbjct: 43 GRVVIDAFCGCGGNAIALASEGAWVVAVDVDARKLDMARHNAAIYGVADRIDFV 96


>gi|317470544|ref|ZP_07929932.1| methyltransferase domain-containing protein [Anaerostipes sp.
           3_2_56FAA]
 gi|316902059|gb|EFV23985.1| methyltransferase domain-containing protein [Anaerostipes sp.
           3_2_56FAA]
          Length = 249

 Score = 37.9 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 2/92 (2%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQA 90
           L      + +LD   G G +     ++G +V   D     +      +  ++++  L Q 
Sbjct: 33  LFAENNVQTVLDCACGTGQHLLMLAELGLSVCGSDYSAAMLKAAAVNLEKHRKKIPLHQC 92

Query: 91  TFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGD 122
            F QLQ+   +   D VV  L  S   +   +
Sbjct: 93  DFRQLQEAYTE-KFDAVVC-LTTSLPHMHTDE 122


>gi|294852044|ref|ZP_06792717.1| dimethyladenosine transferase [Brucella sp. NVSL 07-0026]
 gi|294820633|gb|EFG37632.1| dimethyladenosine transferase [Brucella sp. NVSL 07-0026]
          Length = 276

 Score = 37.9 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 19/43 (44%)

Query: 46 GAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLF 88
          G GG +R+    G+ V A++RD   +    E    Y  +  + 
Sbjct: 56 GPGGLTRALLAQGAYVTAIERDDRCLEALAEIAAHYPGRLRII 98


>gi|307152137|ref|YP_003887521.1| type 11 methyltransferase [Cyanothece sp. PCC 7822]
 gi|306982365|gb|ADN14246.1| Methyltransferase type 11 [Cyanothece sp. PCC 7822]
          Length = 265

 Score = 37.9 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 23/47 (48%)

Query: 31 LLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77
          L++  PG+ ILDA  G G +S    K    V+A+D     +   Q+ 
Sbjct: 41 LMDIQPGETILDAGCGPGVHSIRLAKKNIKVLAIDISKTMLREAQKR 87


>gi|125625220|ref|YP_001033703.1| putative RNA methyltransferase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|124494028|emb|CAL99028.1| putative RNA methyltransferase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|300072030|gb|ADJ61430.1| putative RNA methyltransferase [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 513

 Score = 37.9 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 30/89 (33%), Gaps = 12/89 (13%)

Query: 23  VLLEKVIALLNPAPGKVILD-----ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77
           VL  + +  LNP     ++D      T G      +  K   +V  +D  P ++   +E 
Sbjct: 317 VLYGEAVKALNPKKDDRVIDAYCGVGTIGF-----AVAKKVKSVHGMDITPESIFDAREN 371

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGVDG 106
            +              + +  +P+    G
Sbjct: 372 AKRLG--LKNCHYEIGKAERIIPNWNKSG 398


>gi|37681321|ref|NP_935930.1| ribosomal protein L11 methyltransferase [Vibrio vulnificus YJ016]
 gi|38605128|sp|P60094|PRMA_VIBVY RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|37200072|dbj|BAC95901.1| ribosomal protein L11 methylase [Vibrio vulnificus YJ016]
          Length = 295

 Score = 37.9 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 39/102 (38%), Gaps = 21/102 (20%)

Query: 17  IGDH-VPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS------NVIALDRDPF 69
            G H    L  + +  L+   GK ++D  FG G        + +       VI +D DP 
Sbjct: 140 TGTHPTTALCLEWLEGLDL-SGKTVID--FGCG---SGILAIAAIKLGAEKVIGIDIDPQ 193

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDL 111
           A+   ++  +              QL  Y+P    +G++ D+
Sbjct: 194 ALLASKDNAQR--------NGVADQLDVYLPQDQPEGLLADV 227


>gi|307262046|ref|ZP_07543700.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306868225|gb|EFN00048.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 432

 Score = 37.9 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 6/83 (7%)

Query: 30  ALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSL 87
           ALL    G++ILDA    GG +    ++     VIALD +   +   +E +    +  ++
Sbjct: 240 ALLEAQNGELILDACAAPGGKTTHILEVAPQAKVIALDIEESRLKRVRENLARLGQTATV 299

Query: 88  FQATFSQLQDYVPDKGVDGVVFD 110
                S+  +++     DGV+FD
Sbjct: 300 ICGDASKPAEWLD----DGVMFD 318


>gi|281492836|ref|YP_003354816.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactococcus lactis
           subsp. lactis KF147]
 gi|281376488|gb|ADA65974.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactococcus lactis
           subsp. lactis KF147]
          Length = 513

 Score = 37.9 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 30/89 (33%), Gaps = 12/89 (13%)

Query: 23  VLLEKVIALLNPAPGKVILD-----ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77
           VL  + +  LNP     ++D      T G      +  K   +V  +D  P ++   +E 
Sbjct: 317 VLYGEAVKALNPKKDDRVIDAYCGVGTIGF-----AVAKKVKSVHGMDITPESIFDAREN 371

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGVDG 106
            +              + +  +P+    G
Sbjct: 372 AKRLG--LKNCHYEIGKAERIIPNWNKSG 398


>gi|205353903|ref|YP_002227704.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|205273684|emb|CAR38674.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
          Length = 431

 Score = 37.9 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 3/90 (3%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET-MRDYK 82
           ++ + +  L+      +LD   G G ++       ++VI ++  P  V  G+E  +R+  
Sbjct: 273 MVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVIGVEGVPALVEKGRENAIRNGL 332

Query: 83  EQFSLFQATFSQ--LQDYVPDKGVDGVVFD 110
              + F     +   +      G D V+ D
Sbjct: 333 HNVTFFHENLEEDVTKQPWAKNGFDKVLLD 362


>gi|242237890|ref|YP_002986071.1| 16S rRNA methyltransferase B [Dickeya dadantii Ech703]
 gi|242129947|gb|ACS84249.1| sun protein [Dickeya dadantii Ech703]
          Length = 431

 Score = 37.9 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 37/86 (43%), Gaps = 2/86 (2%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLF 88
            L+P   + ILD     GG +    ++     V+A+D D   ++  +E ++  ++   + 
Sbjct: 241 WLDPQNNEDILDLCAAPGGKTTHILEIAPKARVLAVDVDEHRLARVKENLQRLRQHADVR 300

Query: 89  QATFSQLQDYVPDKGVDGVVFDLGVS 114
           Q      +++  D   D ++ D   S
Sbjct: 301 QGDGRVPEEWCGDSQFDRILLDAPCS 326


>gi|168242718|ref|ZP_02667650.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|194447436|ref|YP_002046926.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|238909737|ref|ZP_04653574.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|194405740|gb|ACF65959.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|205338177|gb|EDZ24941.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
          Length = 431

 Score = 37.9 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 3/90 (3%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET-MRDYK 82
           ++ + +  L+      +LD   G G ++       ++VI ++  P  V  G+E  +R+  
Sbjct: 273 MVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVIGVEGVPALVEKGRENAIRNGL 332

Query: 83  EQFSLFQATFSQ--LQDYVPDKGVDGVVFD 110
              + F     +   +      G D V+ D
Sbjct: 333 HNVTFFHENLEEDVTKQPWAKNGFDKVLLD 362


>gi|198244789|ref|YP_002216931.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|197939305|gb|ACH76638.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
          Length = 431

 Score = 37.9 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 3/90 (3%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET-MRDYK 82
           ++ + +  L+      +LD   G G ++       ++VI ++  P  V  G+E  +R+  
Sbjct: 273 MVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVIGVEGVPALVEKGRENAIRNGL 332

Query: 83  EQFSLFQATFSQ--LQDYVPDKGVDGVVFD 110
              + F     +   +      G D V+ D
Sbjct: 333 HNVTFFHENLEEEVTKQPWAKNGFDKVLLD 362


>gi|16766263|ref|NP_461878.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|167550177|ref|ZP_02343934.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|167993449|ref|ZP_02574543.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|197265036|ref|ZP_03165110.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|207858223|ref|YP_002244874.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|20140074|sp|Q8ZME1|RUMA_SALTY RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|16421508|gb|AAL21837.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|197243291|gb|EDY25911.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|205324674|gb|EDZ12513.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|205328450|gb|EDZ15214.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|206710026|emb|CAR34381.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|261248093|emb|CBG25928.1| Uracil-5--methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267995093|gb|ACY89978.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301159518|emb|CBW19037.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312913979|dbj|BAJ37953.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|321225637|gb|EFX50691.1| 23S rRNA Uracil-5- -methyltransferase RumA [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|332989828|gb|AEF08811.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 431

 Score = 37.9 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 3/90 (3%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET-MRDYK 82
           ++ + +  L+      +LD   G G ++       ++VI ++  P  V  G+E  +R+  
Sbjct: 273 MVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVIGVEGVPALVEKGRENAIRNGL 332

Query: 83  EQFSLFQATFSQ--LQDYVPDKGVDGVVFD 110
              + F     +   +      G D V+ D
Sbjct: 333 HNVTFFHENLEEDVTKQPWAKNGFDKVLLD 362


>gi|15674161|ref|NP_268336.1| hypothetical protein L37880 [Lactococcus lactis subsp. lactis
           Il1403]
 gi|50401786|sp|Q9CDP0|YWFF_LACLA RecName: Full=Uncharacterized RNA methyltransferase ywfF
 gi|12725241|gb|AAK06277.1|AE006446_9 hypothetical protein L37880 [Lactococcus lactis subsp. lactis
           Il1403]
          Length = 513

 Score = 37.9 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 30/89 (33%), Gaps = 12/89 (13%)

Query: 23  VLLEKVIALLNPAPGKVILD-----ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77
           VL  + +  LNP     ++D      T G      +  K   +V  +D  P ++   +E 
Sbjct: 317 VLYGEAVKALNPKKDDRVIDAYCGVGTIGF-----AVAKKVKSVHGMDITPESIFDAREN 371

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGVDG 106
            +              + +  +P+    G
Sbjct: 372 AKRLG--LKNCHYEIGKAERIIPNWNKSG 398


>gi|300709794|ref|YP_003735608.1| hypothetical protein HacjB3_02115 [Halalkalicoccus jeotgali B3]
 gi|299123477|gb|ADJ13816.1| hypothetical protein HacjB3_02115 [Halalkalicoccus jeotgali B3]
          Length = 318

 Score = 37.9 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 3/88 (3%)

Query: 24  LLEKVIALLNPA-PGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82
           LL + IA +  A PG  ILD   G GG        G+ VI  D         +E +  Y 
Sbjct: 163 LLARAIANIAGAGPGATILDPMCGTGGVLVEAGLAGARVIGADAQWKMTHGARENLAHYD 222

Query: 83  EQFSLFQATFSQLQDYVPDKGVDGVVFD 110
            +F LF+   +++   + D  +DGVVFD
Sbjct: 223 VEFDLFRGDATRIP--LRDGTIDGVVFD 248


>gi|294141950|ref|YP_003557928.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Shewanella violacea
           DSS12]
 gi|293328419|dbj|BAJ03150.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Shewanella violacea
           DSS12]
          Length = 453

 Score = 37.9 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 4/90 (4%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCG--QETMRDY 81
           ++ + +  L+  P + +LD   G G +S    K G++VI ++  P  V       T+   
Sbjct: 294 MVNQAVDWLSVEPHERVLDLFCGVGNFSLPLAKKGASVIGVEGVPEMVQQAKLNATLSQL 353

Query: 82  KEQFSLFQATFS-QLQDYVPDKGVDGVVFD 110
            +  S F    S  L        VD ++ D
Sbjct: 354 -DNVSFFHTDLSADLSKESWLGKVDKLLLD 382


>gi|170746986|ref|YP_001753246.1| dimethyladenosine transferase [Methylobacterium radiotolerans JCM
           2831]
 gi|226732597|sp|B1LVB8|RSMA_METRJ RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|170653508|gb|ACB22563.1| dimethyladenosine transferase [Methylobacterium radiotolerans JCM
           2831]
          Length = 292

 Score = 37.9 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 46  GAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSLF 88
           G GG +R+    G+  V+A++RDP A+    E    Y  +  + 
Sbjct: 57  GPGGLTRALLAEGAARVVAIERDPRALPALAEIAAHYPGRLEVV 100


>gi|161615885|ref|YP_001589850.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|161365249|gb|ABX69017.1| hypothetical protein SPAB_03678 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 431

 Score = 37.9 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 3/90 (3%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET-MRDYK 82
           ++ + +  L+      +LD   G G ++       ++VI ++  P  V  G+E  +R+  
Sbjct: 273 MVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVIGVEGVPALVEKGRENAIRNGL 332

Query: 83  EQFSLFQATFSQ--LQDYVPDKGVDGVVFD 110
              + F     +   +      G D V+ D
Sbjct: 333 HNVTFFHENLEEDVTKQPWAKNGFDKVLLD 362


>gi|170739290|ref|YP_001767945.1| Fmu (Sun) domain-containing protein [Methylobacterium sp. 4-46]
 gi|168193564|gb|ACA15511.1| Fmu (Sun) domain protein [Methylobacterium sp. 4-46]
          Length = 437

 Score = 37.9 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 35  APGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDYK 82
            PG+ ++D   G GG + +   +      ++A D DP  ++   E +R   
Sbjct: 229 RPGETVIDLCAGGGGKTLALAALIANRGRLVATDGDPRRLAPIHERLRRAG 279


>gi|116513129|ref|YP_812036.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactococcus
           lactis subsp. cremoris SK11]
 gi|116108783|gb|ABJ73923.1| 23S rRNA m(5)U-1939 methyltransferase [Lactococcus lactis subsp.
           cremoris SK11]
          Length = 513

 Score = 37.9 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 30/89 (33%), Gaps = 12/89 (13%)

Query: 23  VLLEKVIALLNPAPGKVILD-----ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77
           VL  + +  LNP     ++D      T G      +  K   +V  +D  P ++   +E 
Sbjct: 317 VLYGEAVKALNPKKDDRVIDAYCGVGTIGF-----AVAKKVKSVHGMDITPESIFDAREN 371

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGVDG 106
            +              + +  +P+    G
Sbjct: 372 AKRLG--LKNCHYEIGKAERIIPNWNKSG 398


>gi|307822766|ref|ZP_07652997.1| sun protein [Methylobacter tundripaludum SV96]
 gi|307736370|gb|EFO07216.1| sun protein [Methylobacter tundripaludum SV96]
          Length = 435

 Score = 37.5 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 3/87 (3%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMRDYKEQFSL 87
           LL+  PG  +LD     GG +    +       ++A+D D   +    E ++      +L
Sbjct: 235 LLDVRPGHRVLDVCAAPGGKTAHILESQQQLKELVAVDIDESRMQRVSENLQRLNLHATL 294

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGVS 114
                +    +   K  D ++ D   S
Sbjct: 295 VVGDAANPASWWDGKPFDRILLDAPCS 321


>gi|18311883|ref|NP_558550.1| cobalt-precorrin-6Y C(15)-methyltransferase [Pyrobaculum aerophilum
           str. IM2]
 gi|48428122|sp|Q8ZZA9|CBIT_PYRAE RecName: Full=Probable cobalt-precorrin-6Y C(15)-methyltransferase
           [decarboxylating]
 gi|18159297|gb|AAL62732.1| cobalamin biosynthesis precorrin-8W decarboxylase (cbiT)
           [Pyrobaculum aerophilum str. IM2]
          Length = 196

 Score = 37.5 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 32/81 (39%), Gaps = 5/81 (6%)

Query: 28  VIALLNPAPGKVILDATFGAG---GYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY--K 82
            ++ L    G  ++D   G G     +      GS V A+D+DP AV   ++    +   
Sbjct: 32  ALSKLRLIKGGTLVDVGCGTGTISVEAALIMGEGSKVYAIDKDPLAVEITKKNAAKFGVG 91

Query: 83  EQFSLFQATFSQLQDYVPDKG 103
           ++  + +    +L   +P   
Sbjct: 92  DRLIVAEGDALELLPKLPRSN 112


>gi|240140378|ref|YP_002964857.1| dimethyladenosine transferase [Methylobacterium extorquens AM1]
 gi|240010354|gb|ACS41580.1| dimethyladenosine transferase [Methylobacterium extorquens AM1]
          Length = 296

 Score = 37.5 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 46  GAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSLF 88
           G GG +R+    G+  V+A++RDP A+    E    Y  +  + 
Sbjct: 61  GPGGLTRALLAAGAKRVVAIERDPRALPALAEIAAHYPGRLDVI 104


>gi|300775571|ref|ZP_07085432.1| tRNA/rRNA cytosine-C5-methylase [Chryseobacterium gleum ATCC 35910]
 gi|300505598|gb|EFK36735.1| tRNA/rRNA cytosine-C5-methylase [Chryseobacterium gleum ATCC 35910]
          Length = 401

 Score = 37.5 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 31  LLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82
            L+   G+ ++DA  GAGG   +  +  K    +IALD   + ++  +   +   
Sbjct: 219 FLDVKEGQRVVDACAGAGGKTLHLAALMKNKGQIIALDIFDWKLAELKRRAKRAG 273


>gi|254172772|ref|ZP_04879446.1| SAM-dependent methyltransferase, UbiE/COQ5 family [Thermococcus sp.
           AM4]
 gi|214032928|gb|EEB73756.1| SAM-dependent methyltransferase, UbiE/COQ5 family [Thermococcus sp.
           AM4]
          Length = 229

 Score = 37.5 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 36/95 (37%), Gaps = 6/95 (6%)

Query: 27  KVIALLNPA---PGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83
           + +  L          +LD   G GG+S      G  V+ +D     +   +E  ++ + 
Sbjct: 26  ETLEPLLLKFMPKRGRVLDLACGVGGFSFLLEDHGFEVVGVDSSELMLERAREYAKEKRS 85

Query: 84  QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQI 118
           +    +A   +L     +   D V+F +G S +  
Sbjct: 86  RVQFVKADAQELP--FENDSFDYVLF-IGDSVVHF 117


>gi|163853045|ref|YP_001641088.1| dimethyladenosine transferase [Methylobacterium extorquens PA1]
 gi|163664650|gb|ABY32017.1| dimethyladenosine transferase [Methylobacterium extorquens PA1]
          Length = 296

 Score = 37.5 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 46  GAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSLF 88
           G GG +R+    G+  V+A++RDP A+    E    Y  +  + 
Sbjct: 61  GPGGLTRALLAAGAKRVVAIERDPRALPALAEIAAHYPGRLDVI 104


>gi|218531855|ref|YP_002422671.1| dimethyladenosine transferase [Methylobacterium chloromethanicum
           CM4]
 gi|218524158|gb|ACK84743.1| dimethyladenosine transferase [Methylobacterium chloromethanicum
           CM4]
          Length = 296

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 46  GAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSLF 88
           G GG +R+    G+  V+A++RDP A+    E    Y  +  + 
Sbjct: 61  GPGGLTRALLAAGAKRVVAIERDPRALPALAEIAAHYPGRLDVI 104


>gi|121612964|ref|YP_001001110.1| site-specific DNA methyltransferase, putative [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|121504211|gb|EAQ72524.2| site-specific DNA methyltransferase, putative [Campylobacter jejuni
           subsp. jejuni 81-176]
          Length = 228

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 12/92 (13%), Positives = 30/92 (32%), Gaps = 10/92 (10%)

Query: 51  SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFD 110
           + +         A++ D  A     E  ++      +  A   ++   + +   + ++  
Sbjct: 101 AEALSNHALKAYAIELDVKAYKIALENAKNIDPNLEVIHANTFEILPKLIENSKNEIILY 160

Query: 111 LGVSSMQIDCGDRGFS------FQKSGPLDMR 136
           L       D  + GFS      +     LD++
Sbjct: 161 LD---PPFDTRE-GFSDIYEKIYHFLENLDLK 188


>gi|254562982|ref|YP_003070077.1| dimethyladenosine transferase [Methylobacterium extorquens DM4]
 gi|254270260|emb|CAX26254.1| dimethyladenosine transferase [Methylobacterium extorquens DM4]
          Length = 296

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 46  GAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSLF 88
           G GG +R+    G+  V+A++RDP A+    E    Y  +  + 
Sbjct: 61  GPGGLTRALLAAGAKRVVAIERDPRALPALAEIAAHYPGRLDVI 104


>gi|298527889|ref|ZP_07015293.1| Methyltransferase type 11 [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298511541|gb|EFI35443.1| Methyltransferase type 11 [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 268

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 5/96 (5%)

Query: 30  ALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQ 89
            +      + I+D   G G +S  F + G  V+++D     +    E  RD     S   
Sbjct: 53  DIFRQRNVQSIMDVAAGTGFHSVRFLEQGYRVVSVDGSANMLVQAFENARDKGYILSTVH 112

Query: 90  ATFSQLQ-DYVPDKGVDGVVFDLGVS-SMQIDCGDR 123
             + +L  D   +      +  LG S +   D  DR
Sbjct: 113 TDWRRLSFDVQGEYDA---LICLGNSFTHLFDEHDR 145


>gi|193662159|ref|XP_001950779.1| PREDICTED: trimethylguanosine synthase-like [Acyrthosiphon pisum]
          Length = 248

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 2/68 (2%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96
           +I+D   GAG  S  F      VIA+D DP  +   +   + Y   ++       +  L 
Sbjct: 89  LIIDGFCGAGSNSIQFALTSKKVIAIDIDPIKIELARNNAKVYGVSDRIEFIIGDYYALA 148

Query: 97  DYVPDKGV 104
             +    V
Sbjct: 149 PTLKADVV 156


>gi|153009574|ref|YP_001370789.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Ochrobactrum anthropi ATCC 49188]
 gi|151561462|gb|ABS14960.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Ochrobactrum anthropi ATCC 49188]
          Length = 222

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 39/105 (37%), Gaps = 15/105 (14%)

Query: 29  IALLNPAPGKVILDATFGAG-GYSRSFC-KMGSNVIALDRDPFAVSCGQETMRDYK-EQF 85
           + L       V+LD   G G GYS +   K+  +VI L+ D    +     + ++  +  
Sbjct: 76  VQLARIKNTDVVLD--VGCGTGYSAAILSKLAGSVIGLESDSVLSAAATARLAEFGYDNV 133

Query: 86  SLFQATF-------SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDR 123
            +            +     V +  VD V  D  +S  Q+  G R
Sbjct: 134 VIVSGELQAGYPSEAPYDVIVIEGAVDFV-PDALLS--QLKDGGR 175


>gi|307325493|ref|ZP_07604695.1| precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE
           subunit [Streptomyces violaceusniger Tu 4113]
 gi|306888962|gb|EFN19946.1| precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE
           subunit [Streptomyces violaceusniger Tu 4113]
          Length = 417

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 34/76 (44%)

Query: 29  IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLF 88
           +A + P PG ++ D   G+G  +      G+ VI +DRDP A        R +  Q  + 
Sbjct: 263 LARIGPRPGDLVWDIGAGSGAAAVETAGFGAAVITVDRDPDACERTDTLARRFGVQLQVV 322

Query: 89  QATFSQLQDYVPDKGV 104
           Q    ++ + +P+   
Sbjct: 323 QGVAPEVLEDLPEPDA 338


>gi|115525299|ref|YP_782210.1| dimethyladenosine transferase [Rhodopseudomonas palustris BisA53]
 gi|122295624|sp|Q07LF4|RSMA_RHOP5 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|115519246|gb|ABJ07230.1| dimethyladenosine transferase [Rhodopseudomonas palustris BisA53]
          Length = 287

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 46  GAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSLFQA 90
           G GG +R+   +G+  VIA++RD  A+    E    Y  +  +  A
Sbjct: 57  GPGGLTRALLALGAKRVIAIERDERALGALAEISAHYPGRLDIVCA 102


>gi|46125431|ref|XP_387269.1| hypothetical protein FG07093.1 [Gibberella zeae PH-1]
          Length = 259

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 71/186 (38%), Gaps = 26/186 (13%)

Query: 39  VILDATFGAGGYSRS--FCKMGSNVIALDRDPFAVSCGQETMRDY-----------KEQF 85
           +++DA  GAGG + +    +  S VI+++RDP  ++C Q   + Y            + F
Sbjct: 85  ILIDAFGGAGGNTIAFTLSERWSRVISIERDPSTLACAQNNAKVYGIEPGLITWILGDSF 144

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFD--LGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGIS 143
                 F++ ++  PD  V+    D  +  SS           ++     ++  +    +
Sbjct: 145 EYLDKLFNRPEELHPDLRVN---LDETVLFSSPPWGGPG----YRTDEVFNL-YNMQPYN 196

Query: 144 ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSK 203
             D+ N  N  D    L    + +Q   IA      R+    Q   + +S        SK
Sbjct: 197 LDDLHNAYNRLDHALFLPRTSDIRQ---IAKLAPSDRKVEVVQYCMEGASKALVAFLPSK 253

Query: 204 NNRIHP 209
           +++ H 
Sbjct: 254 SSKKHE 259


>gi|332031558|gb|EGI71030.1| Trimethylguanosine synthase [Acromyrmex echinatior]
          Length = 1035

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 2/63 (3%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96
            I+DA  GAG  +  F      VIA+D DP  +   +     Y   ++       F QL 
Sbjct: 879 TIIDAFCGAGSNAIQFAFTCERVIAIDIDPDKIKIARHNAGIYGVDDRIEFITGDFLQLA 938

Query: 97  DYV 99
             +
Sbjct: 939 PQL 941


>gi|324998850|ref|ZP_08119962.1| methylase involved in ubiquinone/menaquinone biosynthesis
           [Pseudonocardia sp. P1]
          Length = 208

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 4/66 (6%)

Query: 46  GAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYV--PD 101
           GAG  +    +  +   V A+D DP  V+  +  +  Y  +  L     + L+  +   D
Sbjct: 45  GAGYGTELILRRFATARVDAIDLDPAMVTRAKRRLSGYGGRVRLATGDMTDLRAALDAED 104

Query: 102 KGVDGV 107
              D V
Sbjct: 105 GSYDAV 110


>gi|290961780|ref|YP_003492962.1| SAM-dependent methyltransferase [Streptomyces scabiei 87.22]
 gi|260651306|emb|CBG74428.1| putative SAM-dependent methyltransferase [Streptomyces scabiei
           87.22]
          Length = 403

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 34/76 (44%)

Query: 29  IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLF 88
           +A L P  G ++ D   G+G ++    + G+ VIA+D DP A        R +  Q  + 
Sbjct: 247 LACLGPRVGDLVWDIGSGSGAFATEAARCGAAVIAVDHDPEACGRTTLAARRFGVQLQVV 306

Query: 89  QATFSQLQDYVPDKGV 104
                 + + +P+  V
Sbjct: 307 HGAAPHVLENLPEPDV 322


>gi|257094638|ref|YP_003168279.1| TrmA family RNA methyltransferase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257047162|gb|ACV36350.1| RNA methyltransferase, TrmA family [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 437

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 46/112 (41%), Gaps = 11/112 (9%)

Query: 23  VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82
           VL+ + ++LL+P PG+ I D   G G ++    + G++V+ ++     V    E      
Sbjct: 271 VLVRRALSLLDPRPGERIADMFCGLGNFTLPIARAGASVVGIEGSAELVGRAAENATANG 330

Query: 83  --EQFSLFQAT-FSQLQDYVPDKG-VDGVVFDL-------GVSSMQIDCGDR 123
             ++     A  F+   + +   G  D ++ D         V S+  D   R
Sbjct: 331 LHDRVEYRVANLFTATTESIGALGRFDKMLIDPPREGALELVKSLGADGPGR 382


>gi|239930453|ref|ZP_04687406.1| hypothetical protein SghaA1_19676 [Streptomyces ghanaensis ATCC
           14672]
          Length = 257

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 35/99 (35%), Gaps = 8/99 (8%)

Query: 26  EKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK 82
            +++ LL+   G  +LDA  G G    +  +    G  VI +DRDP  +   +      +
Sbjct: 30  RQMLDLLDIRAGHTVLDAGCGPGTDLPALAERVGDGGTVIGVDRDPAMLERARARTEGLR 89

Query: 83  EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCG 121
            +  L +     L           +   L    M +D  
Sbjct: 90  -RVELREGDVHALPVEPGTMDRAKIDRVL----MHVDDP 123


>gi|271962929|ref|YP_003337125.1| phosphomannomutase [Streptosporangium roseum DSM 43021]
 gi|270506104|gb|ACZ84382.1| Phosphomannomutase [Streptosporangium roseum DSM 43021]
          Length = 450

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 41/178 (23%), Positives = 58/178 (32%), Gaps = 37/178 (20%)

Query: 17  IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYS-----RSFCKMGSNVI-ALDRDPFA 70
             +H    L  ++ L    P KV++DA  G GG++            S +   LD D   
Sbjct: 155 YAEH----LRSLVDLSGIRPLKVVVDAGNGMGGHTVPVVFEGLPLELSELYFELDGDFPN 210

Query: 71  VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD-GVVFDLGVSSMQIDCGDRGFSFQK 129
                           +       LQ  V D G D G+ FD G +       +RG S   
Sbjct: 211 HEANP-----------IEPDNLRDLQKAVLDVGADIGLAFD-GDADRCWVIDERGES--- 255

Query: 130 SGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQT 187
                  +S S I+A   V +        I+  L      SR    IV      P +T
Sbjct: 256 -------VSPSAITALVAVRELARHPGAMIIHNLIT----SRSVPEIVAEHGGEPVRT 302


>gi|284799691|ref|ZP_05984596.2| 23S rRNA (uracil-5-)-methyltransferase RumA [Neisseria subflava
           NJ9703]
 gi|284797230|gb|EFC52577.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Neisseria subflava
           NJ9703]
          Length = 465

 Score = 37.5 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 4/92 (4%)

Query: 23  VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQE--TMRD 80
           V++ + + LLNP  G+ I D   G G +S    K G++V+ ++   + V   +E   +  
Sbjct: 305 VMVARAVRLLNPQKGERIADLFCGLGNFSLPLAKSGASVVGIEGAYYLVDRARENARLNR 364

Query: 81  YKEQFSL-FQATFSQLQDYVPDKG-VDGVVFD 110
             E  +      F   +  V   G  D ++ D
Sbjct: 365 CAENMTFSVADLFDTDEKTVESWGKFDKMLLD 396


>gi|296418726|ref|XP_002838976.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295634970|emb|CAZ83167.1| unnamed protein product [Tuber melanosporum]
          Length = 248

 Score = 37.5 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 36/102 (35%), Gaps = 12/102 (11%)

Query: 36  PGKVILDATFGAGGYSR--SFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQA- 90
           P + ILD   G GG +   +       VIA+D+D  A+ C +   R Y   ++       
Sbjct: 85  PVETILDVFCGIGGNAIQFALSTSCKRVIAVDKDQTAIDCARHNARIYGVLDKIEFVVGD 144

Query: 91  TFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGD-RGFS-FQKS 130
            F  ++   P    D V       S        RGF  F   
Sbjct: 145 VFQLIEKQDPRLAADAVFM-----SPPWGGPSYRGFGVFNLD 181


>gi|256394198|ref|YP_003115762.1| methyltransferase type 11 [Catenulispora acidiphila DSM 44928]
 gi|256360424|gb|ACU73921.1| Methyltransferase type 11 [Catenulispora acidiphila DSM 44928]
          Length = 252

 Score = 37.5 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 27 KVIALLNPAPGKVILDATFGAGGYSRSF-CKMGSNVIALD 65
          +VI  L   PG  ++D   G GGY      + G+ +I +D
Sbjct: 51 EVIEALRLEPGTRLVDLACGRGGYGLEMAARTGATLIGID 90


>gi|229820435|ref|YP_002881961.1| (Uracil-5)-methyltransferase [Beutenbergia cavernae DSM 12333]
 gi|229566348|gb|ACQ80199.1| (Uracil-5)-methyltransferase [Beutenbergia cavernae DSM 12333]
          Length = 405

 Score = 37.5 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 4/92 (4%)

Query: 22  PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETM 78
            VL+E V+    P  G+ +LD   GAG ++            V A++ DP AV   +  +
Sbjct: 243 TVLVEAVLDAAQPQAGERVLDLYSGAGLFTLPLADAVGADGQVAAVEGDPAAVRDARRNL 302

Query: 79  RDYKEQFSLFQATFSQLQDYVPDKGVDGVVFD 110
            D + Q  L   + + + D     G D V+ D
Sbjct: 303 HD-RGQVDLHGGSVADVLDAGVGAGADLVILD 333


>gi|257885254|ref|ZP_05664907.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
           1,231,501]
 gi|257821106|gb|EEV48240.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
           1,231,501]
          Length = 460

 Score = 37.5 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 35/99 (35%), Gaps = 21/99 (21%)

Query: 24  LLEKVIALLNPAPGKVILD-----ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETM 78
           L  + I  L+  P + I+D      T G      S  K    V  +D  P A++  ++ +
Sbjct: 300 LYGEGIKALDVQPNETIVDAYCGVGTIG-----LSVAKQAKEVRGMDTVPQAIADAKKNV 354

Query: 79  RDYKEQFSLFQATF--SQLQDYVPDK-----GVDGVVFD 110
               E+       +     +  +P         DG++ D
Sbjct: 355 ----ERLGYHNTRYEVGTAEQVLPKWLNEGFQPDGIIVD 389


>gi|301058669|ref|ZP_07199670.1| methionine biosynthesis protein MetW [delta proteobacterium
          NaphS2]
 gi|300447233|gb|EFK10997.1| methionine biosynthesis protein MetW [delta proteobacterium
          NaphS2]
          Length = 264

 Score = 37.5 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 29 IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSL 87
          ++LL+P PG+ +LD   G G +   F KMG +V  +D  P  ++  +  +  +K  F +
Sbjct: 34 VSLLDPRPGERVLDIGCGTGTHLIMFSKMGLDVSGVDASPEVLAKARARL-GHKSNFKI 91


>gi|291438811|ref|ZP_06578201.1| UbiE/COQ5 methyltransferase [Streptomyces ghanaensis ATCC 14672]
 gi|291341706|gb|EFE68662.1| UbiE/COQ5 methyltransferase [Streptomyces ghanaensis ATCC 14672]
          Length = 260

 Score = 37.5 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 35/99 (35%), Gaps = 8/99 (8%)

Query: 26  EKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK 82
            +++ LL+   G  +LDA  G G    +  +    G  VI +DRDP  +   +      +
Sbjct: 33  RQMLDLLDIRAGHTVLDAGCGPGTDLPALAERVGDGGTVIGVDRDPAMLERARARTEGLR 92

Query: 83  EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCG 121
            +  L +     L           +   L    M +D  
Sbjct: 93  -RVELREGDVHALPVEPGTMDRAKIDRVL----MHVDDP 126


>gi|268326443|emb|CBH40031.1| hypothetical protein, SAM-dependent methyltransferase type 11
           family [uncultured archaeon]
          Length = 311

 Score = 37.5 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 9/88 (10%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRD 80
           L   +++ LN     +ILD  FG G  S +     S    +I LD +   +   +E + D
Sbjct: 30  LRNTLLSHLNVDKDGIILD--FGTGPGSLALVLAKSGYKKIIGLDINEGMLGVAREKLSD 87

Query: 81  YKEQFSLFQATFSQLQDYVPDKGVDGVV 108
           Y     L +     L   + D  VD VV
Sbjct: 88  YP--VKLVRGDGLHLP--IDDNSVDAVV 111


>gi|242399817|ref|YP_002995242.1| Sun/NOL1/NOP nucleolar protein [Thermococcus sibiricus MM 739]
 gi|242266211|gb|ACS90893.1| Sun/NOL1/NOP nucleolar protein [Thermococcus sibiricus MM 739]
          Length = 383

 Score = 37.5 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 11/91 (12%)

Query: 32  LNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQFSL 87
           L+P  G +I+D T   GG   +     +    ++ALD+    +S  +  +     +   L
Sbjct: 193 LDPKEGDLIIDMTAAPGGKTSHIAQLLENRGEILALDKSKNRLSKMKNELERLGVKNVKL 252

Query: 88  FQATFSQLQDYVPDKGVDGVVFD-----LGV 113
            Q     L +       D ++ D     LGV
Sbjct: 253 IQMDSRNLPEL--GIQADKILLDAPCTALGV 281


>gi|149372985|ref|ZP_01891941.1| putative sun protein [unidentified eubacterium SCB49]
 gi|149354345|gb|EDM42912.1| putative sun protein [unidentified eubacterium SCB49]
          Length = 403

 Score = 37.5 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 3/38 (7%)

Query: 31  LLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALD 65
           +L+P PG+ I+DA  GAGG   +     +    +I++D
Sbjct: 218 MLDPKPGQRIVDACAGAGGKSLHISEMMENKGQLISMD 255


>gi|320104090|ref|YP_004179681.1| type 11 methyltransferase [Isosphaera pallida ATCC 43644]
 gi|319751372|gb|ADV63132.1| Methyltransferase type 11 [Isosphaera pallida ATCC 43644]
          Length = 380

 Score = 37.5 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 39/95 (41%), Gaps = 10/95 (10%)

Query: 50  YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVF 109
           Y+R   + G+ VI LD    AV       RD++++  + QA    L   V  +  D +VF
Sbjct: 143 YTRLLAERGARVIGLDL-STAVDKAAALTRDHRQRVLIAQA--DLLHPPVAREAFD-LVF 198

Query: 110 DLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISA 144
            LGV          GF       L  R+   G+ A
Sbjct: 199 SLGVL-HHTPDPRAGF-----AQLAARVKPGGLLA 227


>gi|296270988|ref|YP_003653620.1| type 12 methyltransferase [Thermobispora bispora DSM 43833]
 gi|296093775|gb|ADG89727.1| Methyltransferase type 12 [Thermobispora bispora DSM 43833]
          Length = 258

 Score = 37.5 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 22/49 (44%)

Query: 29 IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77
          + LL+P PG+ +LD   G G  +      G++V+ +D     +      
Sbjct: 31 LDLLDPKPGERVLDLGCGTGVLTAEIAARGAHVLGIDASRAMIEAAMAK 79


>gi|331664345|ref|ZP_08365251.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           TA143]
 gi|284922722|emb|CBG35810.1| 23s rRNA (uracil-5-)-methyltransferase [Escherichia coli 042]
 gi|331058276|gb|EGI30257.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           TA143]
          Length = 433

 Score = 37.5 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 36/90 (40%), Gaps = 3/90 (3%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR-DYK 82
           ++ + +  L+  P   +LD   G G ++       ++V+ ++  P  V  GQ+  R +  
Sbjct: 274 MVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNDL 333

Query: 83  EQFSLFQATFSQ--LQDYVPDKGVDGVVFD 110
              + +     +   +      G D V+ D
Sbjct: 334 HNVTFYHENLEEDVTKQPWAKNGFDKVLLD 363


>gi|330508716|ref|YP_004385144.1| methyltransferase [Methanosaeta concilii GP-6]
 gi|328929524|gb|AEB69326.1| methyltransferase, putative [Methanosaeta concilii GP-6]
          Length = 263

 Score = 37.5 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 24/67 (35%)

Query: 30  ALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQ 89
             L    G  ILD   G G +S    + G  V  LD     ++   +  R  K      +
Sbjct: 36  EELAVRDGGSILDVGCGTGRHSIELARRGYAVTGLDLSAEMLARAADAARSKKVNVQWIR 95

Query: 90  ATFSQLQ 96
           +  ++ Q
Sbjct: 96  SDAARFQ 102


>gi|153835467|ref|ZP_01988134.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio harveyi HY01]
 gi|148867978|gb|EDL67175.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio harveyi HY01]
          Length = 439

 Score = 37.5 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 3/90 (3%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR-DYK 82
           ++ + +  L+P   + +LD   G G +S    K   +V+ ++     V         +  
Sbjct: 281 MVAQAVDWLDPKSDERVLDLFCGLGNFSLPIAKRAKHVVGVEGVAEMVEKAANNASLNQI 340

Query: 83  EQFSLFQATFSQLQD--YVPDKGVDGVVFD 110
                + A   Q  +      +  D V+ D
Sbjct: 341 NSARFYHANLEQDFEGQVWAAEQFDKVLLD 370


>gi|84488917|ref|YP_447149.1| CbiT [Methanosphaera stadtmanae DSM 3091]
 gi|84372236|gb|ABC56506.1| CbiT [Methanosphaera stadtmanae DSM 3091]
          Length = 191

 Score = 37.5 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 33/77 (42%), Gaps = 2/77 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQF 85
           VI+ +      V++D   G GG +  F K    + ++D +P A+   +  +  +    + 
Sbjct: 29  VISKVKLTDEDVVVDVGCGTGGLTLEFAKRAKKIYSIDMNPDAIKTTRANLEKFGLQNKV 88

Query: 86  SLFQATFSQLQDYVPDK 102
            L +    +  D++ D 
Sbjct: 89  ELIEDEGLKALDHIEDF 105


>gi|126725880|ref|ZP_01741722.1| Protein-L-isoaspartate carboxylmethyltransferase [Rhodobacterales
           bacterium HTCC2150]
 gi|126705084|gb|EBA04175.1| Protein-L-isoaspartate carboxylmethyltransferase [Rhodobacterales
           bacterium HTCC2150]
          Length = 268

 Score = 37.5 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 45/116 (38%), Gaps = 20/116 (17%)

Query: 23  VLLEK-----VIALLNPAPGKVILDATFGAG-GYSRSFCKMGSNVIALDRDPFAVSCGQE 76
           VLL+      ++  L+  P  V+LD   G G GYS +     S+ +    D   ++   +
Sbjct: 111 VLLDPRTMGKMLDALDVQPDDVVLD--IGCGLGYSSALLARMSDAVVAVEDNAELAAEAQ 168

Query: 77  TM--RDYKEQFSLFQATFSQLQDYVPDKG------VDGVVFDLGVS-SMQIDCGDR 123
            +      +  ++F+     L +     G      V G V D   S + Q+  G R
Sbjct: 169 RLLSEVGADNAAVFEG---DLAEGAAKHGPYDAIVVQGAVEDFPSSLAAQLKEGGR 221


>gi|146295186|ref|YP_001178957.1| short-chain dehydrogenase/reductase SDR [Caldicellulosiruptor
          saccharolyticus DSM 8903]
 gi|145408762|gb|ABP65766.1| short-chain dehydrogenase/reductase SDR [Caldicellulosiruptor
          saccharolyticus DSM 8903]
          Length = 261

 Score = 37.5 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 51 SRSFCKMGSNVIALDRDPFAVSCGQE-TMRDYKEQFSLFQATFSQLQDY 98
          + SF K G+ V A+D D  A+    E   + Y+ +   F+   + ++D 
Sbjct: 28 ALSFLKNGAAVAAIDVDREAIEDAMEDFFKGYEGKIQFFECNLADMEDI 76


>gi|271965787|ref|YP_003339983.1| protein-L-isoaspartatecarboxylmethyltransferase-like protein
           [Streptosporangium roseum DSM 43021]
 gi|270508962|gb|ACZ87240.1| Protein-L-isoaspartatecarboxylmethyltransferase- like protein
           [Streptosporangium roseum DSM 43021]
          Length = 410

 Score = 37.5 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 39/96 (40%), Gaps = 8/96 (8%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMR 79
           L  +++      PG  +L+   G+GGY+ +          +V  +D DPF     +  + 
Sbjct: 80  LQAEMLETAQLTPGAKVLE--VGSGGYNAALIAEIVGPSGSVTTIDIDPFVTERAERFLA 137

Query: 80  DYK-EQFSLFQATFSQ-LQDYVPDKGVDGVVFDLGV 113
           +       +          ++VP+ G D ++  +GV
Sbjct: 138 ETGYSHVRVVLGDAEHAAAEHVPEGGFDAIIVTVGV 173


>gi|309798887|ref|ZP_07693147.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus infantis
           SK1302]
 gi|308117483|gb|EFO54899.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus infantis
           SK1302]
          Length = 362

 Score = 37.5 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 24/65 (36%), Gaps = 10/65 (15%)

Query: 23  VLLEKVIALLNPAPGKVILD-----ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77
           VL  + +  L+      ++D      T G      +F K   ++  +D  P A+   +E 
Sbjct: 276 VLYSEAVKALDVNENDHLIDAYCGVGTIGF-----AFAKKVKSLRGMDIIPEAIEDAKEN 330

Query: 78  MRDYK 82
            +   
Sbjct: 331 AKRMG 335


>gi|291562084|emb|CBL40900.1| Methylase involved in ubiquinone/menaquinone biosynthesis
           [butyrate-producing bacterium SS3/4]
          Length = 247

 Score = 37.5 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 35/100 (35%), Gaps = 4/100 (4%)

Query: 26  EKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQF 85
           ++V+  LN  P K +LD   G G ++ +        I  D     +    E  + Y    
Sbjct: 58  KQVVQHLNLGPDKKVLDIGCGIGRWAENIIDHCGEYIGTDFSDEMIKSAGERFKSYSNAL 117

Query: 86  SLFQATFSQLQDYVPDKG--VDGVVFDLGVSSMQIDCGDR 123
               ++F  +       G   D V+   GVS    D   R
Sbjct: 118 -FINSSFQDIFKNKKIIGKKFDTVIIA-GVSMYINDAELR 155


>gi|153003173|ref|YP_001377498.1| Fmu (Sun) domain-containing protein [Anaeromyxobacter sp. Fw109-5]
 gi|152026746|gb|ABS24514.1| Fmu (Sun) domain protein [Anaeromyxobacter sp. Fw109-5]
          Length = 437

 Score = 37.5 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 35  APGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPFAVSCGQETMRDYK 82
            PGK ++DA  GAGG S +     +   ++ ALD D   +   ++  R   
Sbjct: 237 RPGKTVVDACAGAGGKSLALAMEMRNKGSLHALDTDEGRLDDAKKRARRAG 287


>gi|240275787|gb|EER39300.1| trimethylguanosine synthase [Ajellomyces capsulatus H143]
 gi|325093154|gb|EGC46464.1| trimethylguanosine synthase [Ajellomyces capsulatus H88]
          Length = 240

 Score = 37.5 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 4/62 (6%)

Query: 33  NPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQETMRDYK--EQFSLF 88
            P    V++DA  GAGG + +F +      + A+++DP  + C +   + Y   ++ + F
Sbjct: 70  APKDRSVLVDAFAGAGGNTIAFAQSDRWKRIYAIEKDPTVLQCAKHNAKLYGVEDKITWF 129

Query: 89  QA 90
           + 
Sbjct: 130 EG 131


>gi|239993908|ref|ZP_04714432.1| 16S rRNA m(5)C 967 methyltransferase [Alteromonas macleodii ATCC
           27126]
          Length = 439

 Score = 37.5 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 3/88 (3%)

Query: 30  ALLNPAPGKVILDATFGAGGYSRSFCKMGSN---VIALDRDPFAVSCGQETMRDYKEQFS 86
             L P   + ILD     GG +    +   +   V+ALD D   +   +E M   K    
Sbjct: 244 HYLKPQANERILDCCAAPGGKTGHIVECAPDTQYVLALDADATRLKRVEENMTRLKHTVD 303

Query: 87  LFQATFSQLQDYVPDKGVDGVVFDLGVS 114
           + Q   +    +   K  D ++ D   S
Sbjct: 304 IKQGDAANPDTWWDGKPFDRILLDAPCS 331


>gi|225563205|gb|EEH11484.1| trimethylguanosine synthase [Ajellomyces capsulatus G186AR]
          Length = 240

 Score = 37.5 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 4/62 (6%)

Query: 33  NPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQETMRDYK--EQFSLF 88
            P    V++DA  GAGG + +F +      + A+++DP  + C +   + Y   ++ + F
Sbjct: 70  APKDRSVLVDAFAGAGGNTIAFAQSDRWKRIYAIEKDPTVLQCAKHNAKLYGVEDKITWF 129

Query: 89  QA 90
           + 
Sbjct: 130 EG 131


>gi|328675743|gb|AEB28418.1| RNA methyltransferase, trmA family [Francisella cf. novicida 3523]
          Length = 449

 Score = 37.5 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 57/162 (35%), Gaps = 24/162 (14%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83
           ++++ I LL+ +    I+D   G G ++    +    VI ++ +P  V   +ET  +   
Sbjct: 289 MIKRAIKLLDISENDSIIDLFCGLGNFTLPISQHAKTVIGVEGEPTMVKRAKETADN--N 346

Query: 84  QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGIS 143
             +      + L +                 S +       F + K     M +      
Sbjct: 347 NITNVNFYAANLFE-----------------SFEDKEWFNNFEYNK-----MLLDPPRAG 384

Query: 144 ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPF 185
           A +V +     ++ RI+ +  +    +R A  +VK +     
Sbjct: 385 AQEVCSNIEKFNVKRIVYVSCDTATLARDAGILVKSKGYKLI 426


>gi|169840261|ref|ZP_02873449.1| hypothetical protein cdivTM_24525 [candidate division TM7
           single-cell isolate TM7a]
          Length = 28

 Score = 37.5 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 3/29 (10%)

Query: 289 TKKVV-VPTQEDVAFNRRSRSAKLRAGMR 316
            KK +   T +  A+N RSRSAKLR  ++
Sbjct: 1   NKKPLDGATYD--AYNPRSRSAKLRGALK 27


>gi|188583141|ref|YP_001926586.1| dimethyladenosine transferase [Methylobacterium populi BJ001]
 gi|179346639|gb|ACB82051.1| dimethyladenosine transferase [Methylobacterium populi BJ001]
          Length = 291

 Score = 37.5 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 46  GAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSLF 88
           G GG +R+    G+  V+A++RDP A+    E    Y  +  + 
Sbjct: 61  GPGGLTRALLAAGAKRVVAIERDPRALPALAEIAAHYPGRLDVI 104


>gi|300766053|ref|ZP_07076022.1| SAM-dependent methyltransferase [Listeria monocytogenes FSL N1-017]
 gi|300513255|gb|EFK40333.1| SAM-dependent methyltransferase [Listeria monocytogenes FSL N1-017]
          Length = 192

 Score = 37.5 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 33/86 (38%), Gaps = 8/86 (9%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK--EQFSL 87
             PG   +DAT G  G+             +V+  D    AV   +  + +     Q  L
Sbjct: 18  VRPGDYAIDATCGN-GHDTLLLAELVGINGHVLGFDIQQMAVDATKARLENAGVSSQMEL 76

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGV 113
             A+ +++  Y   + V   +F+LG 
Sbjct: 77  VCASHARIPAY-TSRPVRAAIFNLGY 101


>gi|67920677|ref|ZP_00514197.1| Ribosomal protein L11 methyltransferase [Crocosphaera watsonii WH
           8501]
 gi|67858161|gb|EAM53400.1| Ribosomal protein L11 methyltransferase [Crocosphaera watsonii WH
           8501]
          Length = 299

 Score = 37.5 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 14/102 (13%)

Query: 17  IGDH-VPVLLEKVIALLNPAPGKVILDATFGAG------GYSRSFCKMGSNVIALDRDPF 69
            G H    L  + + +    P + ++ A  G+G      G   +     S   A+D DP 
Sbjct: 133 TGTHPTTQLCLESLEMRLSKPDRDVVIADIGSGSGILSIG---AILLGASKAYAVDIDPL 189

Query: 70  AVSCGQETM---RDYKEQFSLFQATFSQLQDYVPDKGVDGVV 108
           AV   +E     +      ++ Q + ++L + V D GVDG+V
Sbjct: 190 AVKAARENRHLNQIDPNNLAINQGSLTELLELVSD-GVDGIV 230


>gi|262273333|ref|ZP_06051148.1| hypothetical protein VHA_000310 [Grimontia hollisae CIP 101886]
 gi|262222706|gb|EEY74016.1| hypothetical protein VHA_000310 [Grimontia hollisae CIP 101886]
          Length = 250

 Score = 37.5 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 5/74 (6%)

Query: 9  MSSAIHHTI--GDH---VPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIA 63
          MS+ I       +H   V  L +KV+  L P PG+ ILD   G G  ++    +G +V+ 
Sbjct: 1  MSTDIWQATNYANHASYVSQLSQKVMQDLAPQPGERILDLGCGDGELAKVMLDLGCDVVG 60

Query: 64 LDRDPFAVSCGQET 77
          +D     V   Q+ 
Sbjct: 61 IDSSQNMVEAAQQR 74


>gi|86360739|ref|YP_472626.1| ribitol 2-dehydrogenase protein [Rhizobium etli CFN 42]
 gi|86284841|gb|ABC93899.1| ribitol 2-dehydrogenase protein [Rhizobium etli CFN 42]
          Length = 241

 Score = 37.5 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 25/69 (36%), Gaps = 9/69 (13%)

Query: 51  SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFD 110
           + +    G  V+ +DRD  A+      + +              L+       +DG++  
Sbjct: 23  TEAIIAAGGTVVMIDRDEAALDAACGRLGE-----RAIALPLDLLKPEDCAGLLDGILAK 77

Query: 111 LGVSSMQID 119
           +G    Q+D
Sbjct: 78  VG----QLD 82


>gi|78355142|ref|YP_386591.1| methyltransferase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
 gi|78217547|gb|ABB36896.1| methyltransferase (putative) [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 195

 Score = 37.5 bits (86), Expect = 3.4,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 35/98 (35%), Gaps = 14/98 (14%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMR 79
           L+ +V+          ++DAT G  G+   F          V   D    A+      ++
Sbjct: 19  LVRQVV-----RSADTVVDATAGN-GHDTLFLAGLVGPQGRVYGFDVQAQALENTARRLQ 72

Query: 80  DYKE--QFSLFQATFSQLQDYVPD--KGVDGVVFDLGV 113
            +    Q +LF A        +P   + +   +F+LG 
Sbjct: 73  RHGAERQVTLFHAGHEAAGRLLPAGTENLACAMFNLGY 110


>gi|20094473|ref|NP_614320.1| precorrin-6B methylase [Methanopyrus kandleri AV19]
 gi|19887569|gb|AAM02250.1| Precorrin-6B methylase [Methanopyrus kandleri AV19]
          Length = 188

 Score = 37.5 bits (86), Expect = 3.4,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 41/91 (45%), Gaps = 5/91 (5%)

Query: 22  PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETM 78
           PV+   V+A+L P PG+ IL+   G+G  +    +       V A++ D  A    +  +
Sbjct: 21  PVMKATVLAVLRPRPGERILEIGAGSGSLTLELARAVGPLGRVYAVEGDKEAFRSLERNV 80

Query: 79  RDY--KEQFSLFQATFSQLQDYVPDKGVDGV 107
           RD+  +++  + +    +  + V +     V
Sbjct: 81  RDFCLEDRIEIVRGWAPEALEDVDEVDAAVV 111


>gi|20807438|ref|NP_622609.1| ribosomal protein L11 methyltransferase [Thermoanaerobacter
           tengcongensis MB4]
 gi|38605369|sp|Q8RB66|PRMA_THETN RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|20515962|gb|AAM24213.1| Ribosomal protein L11 methylase [Thermoanaerobacter tengcongensis
           MB4]
          Length = 309

 Score = 37.5 bits (86), Expect = 3.4,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 58/149 (38%), Gaps = 12/149 (8%)

Query: 28  VIALLN--PAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYK-E 83
            +  L     PG ++ D   G+G  S +  K+G++ V   D D  AV   +E ++    E
Sbjct: 163 CLQFLEDIVKPGAIVFDVGCGSGILSIAASKLGASYVYGADVDEMAVKIARENVKLNGLE 222

Query: 84  QFSLFQA----TFSQLQDY-VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMS 138
              +FQ+     F    D  V +   D ++  +      +     G  F  SG +  R  
Sbjct: 223 NVEIFQSDLLKNFRGKADVIVANIIADAIIRLIPDVLPHLKEE--GL-FLASGIIKDRFE 279

Query: 139 CSGISASDVVNQANVKDLTRILGILGEEK 167
                A +     ++K+    L IL ++K
Sbjct: 280 EVKERAEEFFEIIDMKEEKEWLSILMKKK 308


>gi|253701400|ref|YP_003022589.1| methyltransferase type 11 [Geobacter sp. M21]
 gi|251776250|gb|ACT18831.1| Methyltransferase type 11 [Geobacter sp. M21]
          Length = 286

 Score = 37.5 bits (86), Expect = 3.4,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 5/69 (7%)

Query: 32  LNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQ---ETMRDYKEQFSL 87
           L+PAPG ++LD   G GG SR   ++   +VI +D+ P   +  +   E +    ++ + 
Sbjct: 66  LDPAPGLLVLDVGCGLGGASRYLARLLDCHVIGVDQSPEYCNVARMLSERL-GLSDRVAY 124

Query: 88  FQATFSQLQ 96
            QA   QL 
Sbjct: 125 LQADALQLP 133


>gi|91201823|emb|CAJ74883.1| strongly similar to glycine-sarcosine-dimethylglycine
           methyltransferase [Candidatus Kuenenia stuttgartiensis]
          Length = 280

 Score = 37.5 bits (86), Expect = 3.4,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 3/96 (3%)

Query: 29  IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLF 88
           I  L     + ILD   G G +S    K G  V++ D  P  ++    T R++       
Sbjct: 59  IEELRRRGARKILDVATGTGFHSIRLLKAGFEVVSADGSPEMLAKAFATGREHGFILRTV 118

Query: 89  QATFSQLQDYVPDKGVDGVVFDLGVS-SMQIDCGDR 123
           QA +  L   V     D V+  LG S +   +  DR
Sbjct: 119 QADWRWLNRDVH-GKFDAVIC-LGNSFTHLFNEHDR 152


>gi|293602344|ref|ZP_06684790.1| RNA methyltransferase Sun [Achromobacter piechaudii ATCC 43553]
 gi|292819106|gb|EFF78141.1| RNA methyltransferase Sun [Achromobacter piechaudii ATCC 43553]
          Length = 445

 Score = 37.5 bits (86), Expect = 3.4,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 4/86 (4%)

Query: 30  ALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYK---EQF 85
            LL PA G  +LDA    GG +    ++   +++ALD D   +   ++ +       ++ 
Sbjct: 253 ELLAPADGMRVLDACSAPGGKTAHLLELADIDLVALDADGERLERVEQNLDRLGLASDRV 312

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDL 111
            L  A  + L  +   K  D V+ D+
Sbjct: 313 HLEAADAADLDAWWDGKPFDAVLADV 338


>gi|299820611|ref|ZP_07052501.1| 23S rRNA (uracil-5-)-methyltransferase [Listeria grayi DSM 20601]
 gi|299818106|gb|EFI85340.1| 23S rRNA (uracil-5-)-methyltransferase [Listeria grayi DSM 20601]
          Length = 460

 Score = 37.5 bits (86), Expect = 3.4,   Method: Composition-based stats.
 Identities = 15/92 (16%), Positives = 38/92 (41%), Gaps = 4/92 (4%)

Query: 23  VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR-DY 81
           VL ++ +        ++++DA  G G  S    K   +V  ++  P A+   +   + + 
Sbjct: 300 VLYQEALDAAGLTGDEIVIDAYCGIGSISLCLAKNAKHVYGVEIVPQAIIDAKANAQLNQ 359

Query: 82  KEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
            +  +       + ++ +P+    G+  D+ V
Sbjct: 360 LDNVTFETG---KAEEVIPNWYRSGIKADVLV 388


>gi|294507539|ref|YP_003571597.1| SAM-dependent methyltransferases [Salinibacter ruber M8]
 gi|294343867|emb|CBH24645.1| SAM-dependent methyltransferases [Salinibacter ruber M8]
          Length = 192

 Score = 37.5 bits (86), Expect = 3.5,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 10/95 (10%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETM--RDY 81
            +A      G + +DAT G  G+  +F       G  V+  D    A+   +  +     
Sbjct: 12  ALAGRAVGEGGIAVDATVGN-GHDTAFLARAVGAGGAVVGFDVQEEALVETRHRLEREAL 70

Query: 82  KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGV 113
                L  A    L  ++ +     V  ++F+LG 
Sbjct: 71  SAPVRLVHAGHQTLARHLEEAERGRVGAIMFNLGY 105


>gi|260794836|ref|XP_002592413.1| hypothetical protein BRAFLDRAFT_67279 [Branchiostoma floridae]
 gi|229277632|gb|EEN48424.1| hypothetical protein BRAFLDRAFT_67279 [Branchiostoma floridae]
          Length = 339

 Score = 37.5 bits (86), Expect = 3.5,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 42/121 (34%), Gaps = 13/121 (10%)

Query: 168 QASRIAHAIVKR--RQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEI 225
           Q  +    I++   R    F+ T          +      + +  T + Q     V  E+
Sbjct: 182 QKKQTERDIIEAYERTLKEFERT-------ANRLRLRVQEKHNENTEARQRQMESVQREV 234

Query: 226 EELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVF 285
           +ELA     AE+ +  GG    V+F   EDRL +     R   +           HP  F
Sbjct: 235 DELAAACDQAEQEMAQGG----VTFLEREDRLTEVIEKHRGAPLPPPLRTQVIAFHPKNF 290

Query: 286 Q 286
           +
Sbjct: 291 E 291


>gi|195036812|ref|XP_001989862.1| GH18564 [Drosophila grimshawi]
 gi|193894058|gb|EDV92924.1| GH18564 [Drosophila grimshawi]
          Length = 438

 Score = 37.5 bits (86), Expect = 3.5,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96
           VI+DA  G GG +  F K    VIA+D D   ++  +     Y    +    QA F Q  
Sbjct: 277 VIVDAFCGCGGNAIQFAKTCGRVIAIDIDAGKLAMAKHNAGIYGVAHKIDFIQADFLQFA 336


>gi|115371881|ref|ZP_01459194.1| hypothetical protein STIAU_8393 [Stigmatella aurantiaca DW4/3-1]
 gi|115371116|gb|EAU70038.1| hypothetical protein STIAU_8393 [Stigmatella aurantiaca DW4/3-1]
          Length = 262

 Score = 37.5 bits (86), Expect = 3.5,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 5/89 (5%)

Query: 30  ALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET--MRDYKEQFSL 87
             L    G+ +LD   G G  S      G+ V  +D  P ++    E   +   +++  +
Sbjct: 24  ESLGDLSGQHVLDVGCGDGSNSILLASRGARVTGIDISPRSIELATERAKLAGVQDRV-V 82

Query: 88  FQATFSQLQDYVPDKGVDGVVFDLGVSSM 116
           F  +  +L  + P+   D +  D G+   
Sbjct: 83  FHCSPLELATF-PENTFDVIWGD-GILHH 109


>gi|6478279|gb|AAF13789.1|AF129501_4 unknown [Buchnera aphidicola]
          Length = 28

 Score = 37.5 bits (86), Expect = 3.5,   Method: Composition-based stats.
 Identities = 6/27 (22%), Positives = 13/27 (48%)

Query: 15 HTIGDHVPVLLEKVIALLNPAPGKVIL 41
          + I  H PV+ +++I  L      + +
Sbjct: 2  NDILKHFPVMKKELIQSLKIKKNGIYI 28


>gi|163740720|ref|ZP_02148113.1| Protein-L-isoaspartate carboxylmethyltransferase [Phaeobacter
           gallaeciensis 2.10]
 gi|161385711|gb|EDQ10087.1| Protein-L-isoaspartate carboxylmethyltransferase [Phaeobacter
           gallaeciensis 2.10]
          Length = 217

 Score = 37.1 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 43/113 (38%), Gaps = 14/113 (12%)

Query: 23  VLLEK-----VIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77
           VLLE      ++  ++  P +++LD   G G  +    ++   VI ++ D    S  Q+ 
Sbjct: 60  VLLEPRTLAKILDAIDVQPDELVLDVACGLGYSTAVIARVAQMVIGVEDDETMASEAQDQ 119

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGV------SSMQIDCGDR 123
           +       ++       L     + G  D ++ + GV         Q+  G R
Sbjct: 120 LSAVGADNAIVHT--GALDAGAAEHGPYDVMIIEGGVETVPEALLDQLKDGGR 170


>gi|220921294|ref|YP_002496595.1| Fmu (Sun) domain-containing protein [Methylobacterium nodulans ORS
           2060]
 gi|219945900|gb|ACL56292.1| Fmu (Sun) domain protein [Methylobacterium nodulans ORS 2060]
          Length = 427

 Score = 37.1 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 35  APGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPFAVSCGQETMRDYK 82
            PG++++D   G GG + +     +    ++A D DP  ++   E +R   
Sbjct: 229 RPGEMVIDLCAGGGGKTLALAAMMENRGRLVATDGDPRRLAPIHERLRRAG 279


>gi|119946820|ref|YP_944500.1| methyltransferase of 50S ribosomal subunit protein L11
           [Psychromonas ingrahamii 37]
 gi|119865424|gb|ABM04901.1| LSU ribosomal protein L11P methyltransferase [Psychromonas
           ingrahamii 37]
          Length = 311

 Score = 37.1 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 14/88 (15%)

Query: 29  IALLNPAPGKVILDATFGAGGYSRSF--CKMGS-NVIALDRDPFAVSCGQETMRDYKEQF 85
           +  L+    KV++D  FG G    +    K+G+  VI +D DP A++  ++  +  +   
Sbjct: 167 LDSLDLQ-DKVVID--FGCGSGILAIAALKLGAKRVIGIDLDPQAITASRDNAQ--RNNV 221

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGV 113
           S       QL+ Y+P    +G+  D+ V
Sbjct: 222 S------DQLELYLPADLPEGIFADVLV 243


>gi|326803898|ref|YP_004321716.1| ribosomal RNA small subunit methyltransferase B [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326650964|gb|AEA01147.1| ribosomal RNA small subunit methyltransferase B [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 470

 Score = 37.1 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 5/93 (5%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMRD--YK 82
            + +LNP  G  +LDA    GG +    +       V+A D     +    + ++     
Sbjct: 265 AVDILNPKAGDRVLDACAAPGGKTVQLAEYVGKTGQVLAFDIAENKLPLIADNVKRMHVD 324

Query: 83  EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSS 115
            Q S+ Q   SQL +  P +  DG++ D   S 
Sbjct: 325 SQVSIQQGDASQLGEKFPAESFDGILVDAPCSG 357


>gi|313892294|ref|ZP_07825887.1| conserved domain protein [Dialister microaerophilus UPII 345-E]
 gi|313119432|gb|EFR42631.1| conserved domain protein [Dialister microaerophilus UPII 345-E]
          Length = 260

 Score = 37.1 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 36/84 (42%), Gaps = 2/84 (2%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83
           L EK +   N +  + ++DA  G G  S    +   +VI ++    A+   +E  +  + 
Sbjct: 9   LYEKALDFANLSGNETVIDAYCGTGTISLYLAQKAKHVIGIEIIKDAIENAKENAK--RN 66

Query: 84  QFSLFQATFSQLQDYVPDKGVDGV 107
           +    +   + +  Y+P+    G+
Sbjct: 67  KIKNVEFHAADVAKYLPELAKKGI 90


>gi|126732775|ref|ZP_01748570.1| protein-L-isoaspartate O-methyltransferase [Sagittula stellata
           E-37]
 gi|126706771|gb|EBA05842.1| protein-L-isoaspartate O-methyltransferase [Sagittula stellata
           E-37]
          Length = 208

 Score = 37.1 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 25/127 (19%)

Query: 17  IGDHVP-----VLLEK-----VIALLNPAPGKVILDATFGAG-GYSRS-FCKMGSNVIAL 64
           + +HVP     VLL+      ++  L+ +   ++LD   G+G GYS +   ++   V+A+
Sbjct: 40  VSEHVPLGGGRVLLDPRVFSKMLDALDISNADLVLD--VGSGLGYSAAVIARIAEAVVAV 97

Query: 65  DRDPFAVSCGQETMRD-YKEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGVSSM------ 116
           + D    S  Q  + + + +   L +     L     + G  D V+ + GV ++      
Sbjct: 98  EDDETRASEAQSLLSEHHADNVVLHEGP---LDAGAAEHGPYDVVIVEGGVETLPDTLCD 154

Query: 117 QIDCGDR 123
           Q+  G R
Sbjct: 155 QLKEGGR 161


>gi|126180109|ref|YP_001048074.1| methyltransferase type 11 [Methanoculleus marisnigri JR1]
 gi|125862903|gb|ABN58092.1| Methyltransferase type 11 [Methanoculleus marisnigri JR1]
          Length = 210

 Score = 37.1 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 6/70 (8%)

Query: 22 PVLLEKVIALLNPAPGKVILDATFGAG-GY-SRSFCKMGS-NVIALDRDPFAVSCGQETM 78
          PV+ E+ +A        + LD   G+G G+ S +  +  + ++IALD DP      + T 
Sbjct: 21 PVIAEQALAWSGIR-DGIALD--LGSGPGHLSVALAEKSNLSIIALDADPATSRIARTTA 77

Query: 79 RDYKEQFSLF 88
              ++    
Sbjct: 78 AGCGDRVIPV 87


>gi|298248160|ref|ZP_06971965.1| Methyltransferase type 11 [Ktedonobacter racemifer DSM 44963]
 gi|297550819|gb|EFH84685.1| Methyltransferase type 11 [Ktedonobacter racemifer DSM 44963]
          Length = 300

 Score = 37.1 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%)

Query: 26 EKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRD 80
          ++++A L   PG  +LDA  G GG +R        G  V+ALD +P  +   +  ++D
Sbjct: 40 KQIVAWLQLTPGSRVLDAGCGGGGMTRLLAGAVGSGGEVVALDANPQLIEWNRSHVKD 97


>gi|283781143|ref|YP_003371898.1| O-methyltransferase family 2 [Pirellula staleyi DSM 6068]
 gi|283439596|gb|ADB18038.1| O-methyltransferase family 2 [Pirellula staleyi DSM 6068]
          Length = 352

 Score = 37.1 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 34/93 (36%), Gaps = 14/93 (15%)

Query: 22  PVLLEKVIALLNPAPGKVILDATFGAG-G-YSRSFCKMGSNVIALDRD-PFAVSCGQETM 78
           PVL      +L  A  + +LD   G G G YS +  +    + A+  D P  +    E  
Sbjct: 173 PVLA----DVLPLAGDETLLD--LGGGTGIYSIALLRKYPQLRAIVLDRPEVLKVSHEFA 226

Query: 79  RDYK--EQFSLFQATFSQLQDYVPDKGVDGVVF 109
             Y   ++  L       +       GVD V+ 
Sbjct: 227 EQYGVADRLELLAG---DMFSAALPAGVDRVLL 256


>gi|253575778|ref|ZP_04853113.1| ribosomal RNA small subunit methyltransferase B [Paenibacillus sp.
           oral taxon 786 str. D14]
 gi|251844821|gb|EES72834.1| ribosomal RNA small subunit methyltransferase B [Paenibacillus sp.
           oral taxon 786 str. D14]
          Length = 506

 Score = 37.1 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 4/92 (4%)

Query: 28  VIALLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-E 83
           V   L+P PG  +LD     GG   +     +    V+A D  P      ++  +    +
Sbjct: 295 VAEALDPQPGMNVLDCCAAPGGKTCHIAEIMEGRGRVLANDIHPHKAKLIEDHAKRLGLD 354

Query: 84  QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSS 115
                     QL + +     D ++ D+  S 
Sbjct: 355 NVDTLSGDALQLAERLKAASFDRILLDVPCSG 386


>gi|167006005|ref|ZP_02271763.1| site-specific DNA methyltransferase, putative [Campylobacter jejuni
           subsp. jejuni 81-176]
          Length = 158

 Score = 37.1 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 12/92 (13%), Positives = 30/92 (32%), Gaps = 10/92 (10%)

Query: 51  SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFD 110
           + +         A++ D  A     E  ++      +  A   ++   + +   + ++  
Sbjct: 31  AEALSNHALKAYAIELDVKAYKIALENAKNIDPNLEVIHANTFEILPKLIENSKNEIILY 90

Query: 111 LGVSSMQIDCGDRGFS------FQKSGPLDMR 136
           L       D  + GFS      +     LD++
Sbjct: 91  LD---PPFDTRE-GFSDIYEKIYHFLENLDLK 118


>gi|297844572|ref|XP_002890167.1| hypothetical protein ARALYDRAFT_471841 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297336009|gb|EFH66426.1| hypothetical protein ARALYDRAFT_471841 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 274

 Score = 37.1 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 14/94 (14%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKM--------GSNVIALDRDPFAVSCGQETMRDY---- 81
              G +++DAT G G  + +  KM        G  V A+D    A+      +       
Sbjct: 95  IQKGDMVIDATCGNGNDTLAMLKMVMNDSVGCGGYVYAMDIQKDAIESTSSLLDQAVGSK 154

Query: 82  -KEQFSLFQATFSQLQDYVPDKG-VDGVVFDLGV 113
            KE   LF    S++ + VP+   V  V F+LG 
Sbjct: 155 EKECVKLFNICHSKMGEIVPENSRVRMVAFNLGY 188


>gi|313105817|ref|ZP_07792080.1| putative RNA methyltransferase [Pseudomonas aeruginosa 39016]
 gi|310878582|gb|EFQ37176.1| putative RNA methyltransferase [Pseudomonas aeruginosa 39016]
          Length = 450

 Score = 37.1 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 54/162 (33%), Gaps = 23/162 (14%)

Query: 22  PV---LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET- 77
           PV   ++ + +  L P   + +LD   G G +S    +  + V+ ++     V       
Sbjct: 287 PVNESMIRQALDWLAPTADERVLDLFCGLGNFSLPLARRVARVVGVEGVAAMVERAGANA 346

Query: 78  MRDYKEQFSLFQATFSQLQDYVP--DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           + +       FQA  S+     P  ++G   V+ D            R       G  + 
Sbjct: 347 LANGLGNAHFFQADLSKALAEAPWAEQGFTAVLLD----------PPR------DGAFEA 390

Query: 136 RMSCSGISASDVVN-QANVKDLTRILGILGEEKQASRIAHAI 176
               S + A  VV    N   L R  G +  +    + A  +
Sbjct: 391 VREMSSLGARRVVYVSCNPATLARDAGEMARQGYRLKRAGIL 432


>gi|227329137|ref|ZP_03833161.1| 23S rRNA 5-methyluridine methyltransferase [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 449

 Score = 37.1 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 3/90 (3%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82
           ++ + +A L+  P   ILD   G G ++    +  ++V+ ++     V  G+E  +    
Sbjct: 285 MVAQALAWLDVQPQDRILDLFCGMGNFTLPLAQRAASVVGVEGVTALVEKGRENAQRNGL 344

Query: 83  EQFSLFQATFSQ--LQDYVPDKGVDGVVFD 110
              + F         Q     +G D ++ D
Sbjct: 345 SNVTFFHQNLEDDVTQQPWAAQGFDKILLD 374


>gi|107100389|ref|ZP_01364307.1| hypothetical protein PaerPA_01001414 [Pseudomonas aeruginosa PACS2]
          Length = 452

 Score = 37.1 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 54/162 (33%), Gaps = 23/162 (14%)

Query: 22  PV---LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET- 77
           PV   ++ + +  L P   + +LD   G G +S    +  + V+ ++     V       
Sbjct: 289 PVNESMIRQALDWLAPTADERVLDLFCGLGNFSLPLARRVARVVGVEGVAAMVERAGANA 348

Query: 78  MRDYKEQFSLFQATFSQLQDYVP--DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           + +       FQA  S+     P  ++G   V+ D            R       G  + 
Sbjct: 349 LANGLGNAHFFQADLSKALAEAPWAEQGFTAVLLD----------PPR------DGAFEA 392

Query: 136 RMSCSGISASDVVN-QANVKDLTRILGILGEEKQASRIAHAI 176
               S + A  VV    N   L R  G +  +    + A  +
Sbjct: 393 VREMSSLGARRVVYVSCNPATLARDAGEMARQGYRLKRAGIL 434


>gi|315638959|ref|ZP_07894130.1| type II DNA modification methylase EcaI [Campylobacter upsaliensis
           JV21]
 gi|315480988|gb|EFU71621.1| type II DNA modification methylase EcaI [Campylobacter upsaliensis
           JV21]
          Length = 368

 Score = 37.1 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83
           +L ++IA+ +      ++D   G GG+ +    +G   I +D    A+   Q+ ++  + 
Sbjct: 294 MLRRIIAM-SSNEDSRVMDCFCGGGGFLQEALNLGRKFIGIDEGIEAIKLNQKWLKASEN 352

Query: 84  QF 85
             
Sbjct: 353 HL 354


>gi|163788936|ref|ZP_02183381.1| putative sun protein [Flavobacteriales bacterium ALC-1]
 gi|159876173|gb|EDP70232.1| putative sun protein [Flavobacteriales bacterium ALC-1]
          Length = 403

 Score = 37.1 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 3/41 (7%)

Query: 28  VIALLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALD 65
           V   L+  PG  ++D   GAGG   +  +  +    VIA+D
Sbjct: 216 VADFLDVKPGMKVVDVCAGAGGKTLHLAALMENKGQVIAMD 256


>gi|307091952|gb|ADN28311.1| putative rRNA methyltransferase [uncultured bacterium]
          Length = 123

 Score = 37.1 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 46 GAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ 96
          G GG +R+   +G+  VIA++RD  A+   QE    Y  +  +  A   +  
Sbjct: 27 GPGGLTRALLALGARRVIAVERDDRAIVALQEVAARYPGRLDIVAADALEFD 78


>gi|241203944|ref|YP_002975040.1| dimethyladenosine transferase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240857834|gb|ACS55501.1| dimethyladenosine transferase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 275

 Score = 37.1 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 33/68 (48%), Gaps = 2/68 (2%)

Query: 46  GAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ-DYVPDKG 103
           G GG +R+   +G+  VIA++RDP  +    E    Y  +  + +    ++  + +  +G
Sbjct: 57  GPGGLTRAILALGARKVIAIERDPRCLPALAEIADHYPGRLEVIEGDALKIDFETLVPEG 116

Query: 104 VDGVVFDL 111
              ++ +L
Sbjct: 117 PVKIIANL 124


>gi|83814943|ref|YP_445647.1| rRNA methylase [Salinibacter ruber DSM 13855]
 gi|83756337|gb|ABC44450.1| Putative rRNA methylase superfamily [Salinibacter ruber DSM 13855]
          Length = 192

 Score = 37.1 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 10/95 (10%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETM--RDY 81
            +A      G + +DAT G  G+  +F       G  V+  D    A+   +  +     
Sbjct: 12  ALAGRAVGEGGIAVDATVGN-GHDTAFLAQAVGAGGAVVGFDVQEEALVETRHRLEREAL 70

Query: 82  KEQFSLFQATFSQLQDYVPD---KGVDGVVFDLGV 113
                L  A    L  ++ +     V  ++F+LG 
Sbjct: 71  SAPVRLVHAGHQTLARHLEEAERGRVGAIMFNLGY 105


>gi|15596130|ref|NP_249624.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas aeruginosa
           PAO1]
 gi|116048856|ref|YP_792343.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|254239284|ref|ZP_04932607.1| hypothetical protein PACG_05477 [Pseudomonas aeruginosa C3719]
 gi|296390713|ref|ZP_06880188.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas aeruginosa
           PAb1]
 gi|20140268|sp|Q9I525|RUMA_PSEAE RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|122257963|sp|Q02I93|RUMA_PSEAB RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|9946837|gb|AAG04322.1|AE004527_9 probable RNA methyltransferase [Pseudomonas aeruginosa PAO1]
 gi|115584077|gb|ABJ10092.1| probable RNA methyltransferase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126171215|gb|EAZ56726.1| hypothetical protein PACG_05477 [Pseudomonas aeruginosa C3719]
          Length = 450

 Score = 37.1 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 54/162 (33%), Gaps = 23/162 (14%)

Query: 22  PV---LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET- 77
           PV   ++ + +  L P   + +LD   G G +S    +  + V+ ++     V       
Sbjct: 287 PVNESMIRQALDWLAPTADERVLDLFCGLGNFSLPLARRVARVVGVEGVAAMVERAGANA 346

Query: 78  MRDYKEQFSLFQATFSQLQDYVP--DKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM 135
           + +       FQA  S+     P  ++G   V+ D            R       G  + 
Sbjct: 347 LANGLGNAHFFQADLSKALAEAPWAEQGFTAVLLD----------PPR------DGAFEA 390

Query: 136 RMSCSGISASDVVN-QANVKDLTRILGILGEEKQASRIAHAI 176
               S + A  VV    N   L R  G +  +    + A  +
Sbjct: 391 VREMSSLGARRVVYVSCNPATLARDAGEMARQGYRLKRAGIL 432


>gi|294628395|ref|ZP_06706955.1| methyltransferase [Streptomyces sp. e14]
 gi|292831728|gb|EFF90077.1| methyltransferase [Streptomyces sp. e14]
          Length = 426

 Score = 37.1 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 1/81 (1%)

Query: 24  LLEKV-IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82
           LL    +A L P  G ++ D   G+G ++    + G+ VIA+D DP A +  +   R + 
Sbjct: 237 LLRAAQLARLGPRVGDLVWDIGCGSGAFTAEAARSGAAVIAVDHDPDACARTEAAARSFG 296

Query: 83  EQFSLFQATFSQLQDYVPDKG 103
            Q  +       + + +P+  
Sbjct: 297 VQAHVVLGDAPHILENLPEPD 317


>gi|167745818|ref|ZP_02417945.1| hypothetical protein ANACAC_00512 [Anaerostipes caccae DSM 14662]
 gi|167654849|gb|EDR98978.1| hypothetical protein ANACAC_00512 [Anaerostipes caccae DSM 14662]
          Length = 245

 Score = 37.1 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 2/92 (2%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQA 90
           L      + +LD   G G +     ++G +V   D     +      +  Y ++  L Q 
Sbjct: 33  LFAENNVQTVLDCACGTGQHLLMLDELGLSVCGSDYSAAMLKAAAVNLEKYGKKIPLQQC 92

Query: 91  TFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGD 122
            F QLQ+   +   D VV  L  S   +   +
Sbjct: 93  DFRQLQEAYTE-KFDAVVC-LTTSLPHMHTDE 122


>gi|158425944|ref|YP_001527236.1| dimethyladenosine transferase [Azorhizobium caulinodans ORS 571]
 gi|172047844|sp|A8HVI9|RSMA_AZOC5 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|158332833|dbj|BAF90318.1| rRNA 16S rRNA dimethylase [Azorhizobium caulinodans ORS 571]
          Length = 291

 Score = 37.1 bits (85), Expect = 4.0,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 46  GAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYKEQFSLFQA 90
           G GG +R+   +G+  VIA++RD   ++   E    Y  +  + + 
Sbjct: 57  GPGGLTRALLALGARKVIAIERDHRCIAALNEIAAAYPGRLEIIEG 102


>gi|310822244|ref|YP_003954602.1| 2-(s)-hydroxypropyl-com dehydrogenase [Stigmatella aurantiaca
           DW4/3-1]
 gi|309395316|gb|ADO72775.1| 2-(S)-hydroxypropyl-CoM dehydrogenase [Stigmatella aurantiaca
           DW4/3-1]
          Length = 260

 Score = 37.1 bits (85), Expect = 4.1,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 9/71 (12%)

Query: 51  SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSL-------FQATFSQLQDYVPDKG 103
           + +F + G  V+ +DRD  A+    E +       +            F  +   +   G
Sbjct: 25  AEAFVQAGCRVVVIDRDKRALQQAVEALGPTTAGITADVSDPASIHDAFLGVDRALG--G 82

Query: 104 VDGVVFDLGVS 114
           VD ++ + G+S
Sbjct: 83  VDVLIANAGIS 93


>gi|297570957|ref|YP_003696731.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Arcanobacterium haemolyticum DSM 20595]
 gi|296931304|gb|ADH92112.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Arcanobacterium haemolyticum DSM 20595]
          Length = 281

 Score = 37.1 bits (85), Expect = 4.1,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 24/67 (35%), Gaps = 6/67 (8%)

Query: 29  IALLN--PAPGKVILD-ATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKE 83
           +  L        V++D  T G+G  + +         V A++RD  A +        Y  
Sbjct: 101 LDALEKMTVENPVVVDLCT-GSGAIAIAIATEKPRTRVWAVERDETAYALATANNERYGN 159

Query: 84  QFSLFQA 90
           + ++   
Sbjct: 160 RVTIVHG 166


>gi|127513407|ref|YP_001094604.1| methyltransferase type 11 [Shewanella loihica PV-4]
 gi|126638702|gb|ABO24345.1| Methyltransferase type 11 [Shewanella loihica PV-4]
          Length = 335

 Score = 37.1 bits (85), Expect = 4.1,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query: 224 EIEELAQGLRSAEKALKAGGLLIVVSFHS 252
           E  +LA  +  A + LK GG L +V+ HS
Sbjct: 140 EYSDLALSIPEAIRVLKPGGRLSLVTHHS 168


>gi|115376828|ref|ZP_01464052.1| 2-(S)-hydroxypropyl-CoM dehydrogenase [Stigmatella aurantiaca
           DW4/3-1]
 gi|115366190|gb|EAU65201.1| 2-(S)-hydroxypropyl-CoM dehydrogenase [Stigmatella aurantiaca
           DW4/3-1]
          Length = 261

 Score = 37.1 bits (85), Expect = 4.1,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 9/71 (12%)

Query: 51  SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSL-------FQATFSQLQDYVPDKG 103
           + +F + G  V+ +DRD  A+    E +       +            F  +   +   G
Sbjct: 26  AEAFVQAGCRVVVIDRDKRALQQAVEALGPTTAGITADVSDPASIHDAFLGVDRALG--G 83

Query: 104 VDGVVFDLGVS 114
           VD ++ + G+S
Sbjct: 84  VDVLIANAGIS 94


>gi|159107917|ref|XP_001704233.1| Dimethyladenosine transferase [Giardia lamblia ATCC 50803]
 gi|157432290|gb|EDO76559.1| Dimethyladenosine transferase [Giardia lamblia ATCC 50803]
          Length = 316

 Score = 37.1 bits (85), Expect = 4.1,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 51 SRSFCKMGSNVIALDRDPFAVSCGQETMR---DYKEQFSLFQATFSQLQ 96
          + +  +   +VIA++ DP  VS  ++ +    +Y+ +F++    F+++ 
Sbjct: 47 TLALLEKARHVIAIEIDPRMVSELKKRIAAIPEYRGKFTIIHKDFTKMP 95


>gi|313888449|ref|ZP_07822116.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845478|gb|EFR32872.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 542

 Score = 37.1 bits (85), Expect = 4.2,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 27/78 (34%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83
           L +K I  L P     I D   G G  S S  K G  VI ++    AV   +E       
Sbjct: 268 LYKKAIDYLEPKDDDKIYDLYCGVGSISLSVAKSGPEVIGIEIVESAVDDARENAEKNNI 327

Query: 84  QFSLFQATFSQLQDYVPD 101
           +         +  + + +
Sbjct: 328 KARFVHGPAEETIEKLWE 345


>gi|297530825|ref|YP_003672100.1| short-chain dehydrogenase/reductase SDR [Geobacillus sp. C56-T3]
 gi|297254077|gb|ADI27523.1| short-chain dehydrogenase/reductase SDR [Geobacillus sp. C56-T3]
          Length = 247

 Score = 37.1 bits (85), Expect = 4.2,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 59/186 (31%), Gaps = 40/186 (21%)

Query: 51  SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFD 110
           +R+F K G+NV+ +DRD                               +   G   +   
Sbjct: 20  ARAFAKQGANVVIIDRDIQ---------------------NGEAFAAQLQSDGFKAIFAA 58

Query: 111 LGVSSMQIDCGDRGFSFQKS-----GPLDMRMSCSGISASDVVNQANVKDLTRILGILGE 165
             V   ++D  +R   F +      G +D  ++ +G+S      +  V++   +L     
Sbjct: 59  ADV--RKVDDIER---FVQEAAGRFGRIDYLINNAGVSRWKSPYELTVEEWDDVLSTNLR 113

Query: 166 EKQASRIAHAIVKRRQSA-----PFQTTQDLSSLIQKTVYFSKNNR----IHPATRSFQA 216
               +    A   RR +         +T+ L S      Y +         H    SF  
Sbjct: 114 SAFFASREAAKYMRRNAKGGAIVNIASTRALMSEPNSEAYAASKGGLVALTHALAVSFAD 173

Query: 217 LRIFVN 222
            RI VN
Sbjct: 174 DRIRVN 179


>gi|197119722|ref|YP_002140149.1| rRNA methyltransferase [Geobacter bemidjiensis Bem]
 gi|197089082|gb|ACH40353.1| rRNA methyltransferase, putative [Geobacter bemidjiensis Bem]
          Length = 192

 Score = 37.1 bits (85), Expect = 4.2,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 6/85 (7%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK--EQFSLF 88
             PG   LDAT G G  +    ++   G  V A D  P A++  +  +          L 
Sbjct: 22  VRPGDRALDATCGNGFDTLLLAELAGEGGEVWAFDVQPRAIAATRALLEREGRLATVHLL 81

Query: 89  QATFSQLQDYVPDKGVDGVVFDLGV 113
           +A   ++ ++VP  G+   VF+LG 
Sbjct: 82  EAGHERVSEFVP-VGLAAAVFNLGY 105


>gi|317153229|ref|YP_004121277.1| ribosomal L11 methyltransferase [Desulfovibrio aespoeensis Aspo-2]
 gi|316943480|gb|ADU62531.1| ribosomal L11 methyltransferase [Desulfovibrio aespoeensis Aspo-2]
          Length = 291

 Score = 37.1 bits (85), Expect = 4.2,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 10/52 (19%)

Query: 34  PAPGKVILD-AT----FGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRD 80
             PG+  LD  T     G G      CK+G   I LD DP A+ C +E    
Sbjct: 145 IEPGQSFLDLGTGSGILGIG-----LCKLGLTGIGLDIDPQAIECARENAEA 191


>gi|257357706|dbj|BAI23332.1| putative methyltransferase [Streptomyces griseus]
          Length = 255

 Score = 37.1 bits (85), Expect = 4.2,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 11/101 (10%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83
           L E+ +  L P     ++D   G G  +RS     ++VIA++ DP  +   +  +     
Sbjct: 28  LPEEAVDWLVPDGCATVVDLAAGTGALTRSLVHRVAHVIAVEPDPRMLGALRRNL--PGS 85

Query: 84  QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSS-MQIDCGDR 123
           +      T  Q+   +PD   D V+    VS        +R
Sbjct: 86  R--ALSGTGEQIP--LPDGEADAVL----VSMAWHWLDPER 118


>gi|332159191|ref|YP_004424470.1| hypothetical protein PNA2_1552 [Pyrococcus sp. NA2]
 gi|331034654|gb|AEC52466.1| hypothetical protein PNA2_1552 [Pyrococcus sp. NA2]
          Length = 279

 Score = 37.1 bits (85), Expect = 4.3,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 4/86 (4%)

Query: 29  IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCG--QETMRDYKEQ-- 84
           +  +NP  G+V+LD   G G  +    K G+ VI +++D   +         +D  +   
Sbjct: 117 VNTVNPRKGEVVLDTCMGLGYTAIESAKRGARVITIEKDENVIQLAKINPWSKDLFDSPL 176

Query: 85  FSLFQATFSQLQDYVPDKGVDGVVFD 110
             +      +L     D+  D ++ D
Sbjct: 177 IKIIHGDSYELVRKFEDEIFDAIIHD 202


>gi|48477962|ref|YP_023668.1| methyltransferase [Picrophilus torridus DSM 9790]
 gi|48430610|gb|AAT43475.1| methyltransferase [Picrophilus torridus DSM 9790]
          Length = 173

 Score = 37.1 bits (85), Expect = 4.3,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 11/81 (13%)

Query: 28  VIALLNPAPGKVILDATFGAG-GYSRSFC----KMGSNVIALDRDPFAVSCGQETMRDYK 82
           V+ ++N  P   I+D  FGAG GY  S           V A++ D  A+S   E + D  
Sbjct: 21  VLEVMNIQPDDRIID--FGAGDGY-YSILFSNFLRCGYVYAIENDDEAISMINERIND-N 76

Query: 83  EQFSLFQATFSQLQDYVPDKG 103
           ++  +       ++  +P+  
Sbjct: 77  KKVQVINGDLCDME--LPEHN 95


>gi|320167290|gb|EFW44189.1| tRNA and rRNA cytosine-C5-methylase [Capsaspora owczarzaki ATCC
           30864]
          Length = 546

 Score = 37.1 bits (85), Expect = 4.4,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 23/68 (33%), Gaps = 2/68 (2%)

Query: 50  YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQLQDYVPDK-GVDGV 107
           +  +   +  +V A D DP      Q  MR +           F +++   P    V  +
Sbjct: 287 HVAALVGLKGHVHAFDLDPRRFKTMQNAMRKFGASNVECMNGNFLEIKPTDPKYAKVSAI 346

Query: 108 VFDLGVSS 115
           + D   S 
Sbjct: 347 LLDPSCSG 354


>gi|282882011|ref|ZP_06290652.1| rRNA methylase [Peptoniphilus lacrimalis 315-B]
 gi|281298041|gb|EFA90496.1| rRNA methylase [Peptoniphilus lacrimalis 315-B]
          Length = 181

 Score = 37.1 bits (85), Expect = 4.4,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 7/79 (8%)

Query: 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMRDY 81
          +++++   N   GK  +DAT G G  +    K       V A D    A++  +E  ++ 
Sbjct: 11 VDEILK--NDFKGKSAVDATMGMGNDTEKLLKVVGEKGKVFAFDVQDQAINYCKEKFKNI 68

Query: 82 K--EQFSLFQATFSQLQDY 98
             E   +       L+++
Sbjct: 69 NNLEILKISHEFIDILENF 87


>gi|271969629|ref|YP_003343825.1| SAM-dependent methyltransferase [Streptosporangium roseum DSM
          43021]
 gi|270512804|gb|ACZ91082.1| SAM-dependent methyltransferase, putative [Streptosporangium
          roseum DSM 43021]
          Length = 258

 Score = 37.1 bits (85), Expect = 4.4,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 29 IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83
          + LL+P PG+ I+D   G G  +      G+ V+ +D     +      +  Y  
Sbjct: 31 VELLDPQPGERIVDLGCGTGVLTAEITSRGARVLGIDGSSAMIEKA---LAQYPG 82


>gi|169334036|ref|ZP_02861229.1| hypothetical protein ANASTE_00429 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258753|gb|EDS72719.1| hypothetical protein ANASTE_00429 [Anaerofustis stercorihominis DSM
           17244]
          Length = 185

 Score = 37.1 bits (85), Expect = 4.4,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 5/85 (5%)

Query: 33  NPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK-EQFSLF 88
               G ++LD T G G  +    K       V A D    AV   ++ + + +     L 
Sbjct: 16  KVVSGNIVLDMTMGNGNDTLYLSKKVGEKGKVYAFDIQSQAVKNTKKLLDENRINNAVLI 75

Query: 89  QATFSQLQDYVPDKGVDGVVFDLGV 113
             +   + +YV D  VD  V++LG 
Sbjct: 76  NDSHENVLNYVTD-KVDFAVYNLGY 99


>gi|88812357|ref|ZP_01127607.1| 23S rRNA methyltransferase/RumA [Nitrococcus mobilis Nb-231]
 gi|88790364|gb|EAR21481.1| 23S rRNA methyltransferase/RumA [Nitrococcus mobilis Nb-231]
          Length = 450

 Score = 37.1 bits (85), Expect = 4.5,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 4/91 (4%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR-DYK 82
           L+E+ IALL   P   +LD   G G ++    +  ++V+ L+ D   V   +E    +  
Sbjct: 284 LVERAIALLALQPQDRVLDLYCGLGNFAFCIARQVASVVGLEGDDALVERARENAARNAI 343

Query: 83  EQFSLFQATFSQL---QDYVPDKGVDGVVFD 110
                 +A  S+      ++   GV  V+ D
Sbjct: 344 TNVVFQRADLSRGIAELAHLQRDGVSRVLLD 374


>gi|323703882|ref|ZP_08115516.1| RNA methyltransferase, TrmA family [Desulfotomaculum nigrificans
           DSM 574]
 gi|323531170|gb|EGB21075.1| RNA methyltransferase, TrmA family [Desulfotomaculum nigrificans
           DSM 574]
          Length = 462

 Score = 37.1 bits (85), Expect = 4.6,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 3/91 (3%)

Query: 23  VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR-DY 81
           VL  K +   N    + ++DA  G G  +    +   +VI L+  P AV+  +E  R + 
Sbjct: 299 VLYNKALEFANLKGDETVVDAYCGIGTIASLLARHAGSVIGLEIVPDAVTDARENARLNN 358

Query: 82  KEQFSLFQATFSQLQDYVPDKGV--DGVVFD 110
                 F  +  +L   +  +G+  D VV D
Sbjct: 359 LFNIEFFNGSVERLLPEMVARGLRPDLVVLD 389


>gi|146220118|gb|ABQ11273.1| putative methyltransferase [uncultured bacterium]
          Length = 247

 Score = 37.1 bits (85), Expect = 4.6,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 10/76 (13%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDR-----DPFAVSCGQETMR 79
           ++++IALL    G  +LD   G G +S  F + G  V  +DR     D    S  +E ++
Sbjct: 31  VDQMIALLGLKSGGAVLDLCSGIGRHSIEFARRGFKVTGVDRTTPYLDQARSSAAKENLK 90

Query: 80  DYKEQFSLFQATFSQL 95
                    ++   + 
Sbjct: 91  -----IEFVRSDMREF 101


>gi|325190286|emb|CCA24762.1| trimethylguanosine synthase putative [Albugo laibachii Nc14]
          Length = 753

 Score = 36.7 bits (84), Expect = 4.6,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 43/123 (34%), Gaps = 18/123 (14%)

Query: 38  KVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQL 95
             ++D   G GG +    +   +VIA++ DP  +   +   + Y   ++           
Sbjct: 596 GTVVDLFAGCGGNTIQLAQTCHHVIAIEIDPLRIHKAKHNAQVYGVSDRIEWICG---DA 652

Query: 96  QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKS--GPLDMRMS--CSGISASDVVNQA 151
            + +     D +       S        G ++ +      DM ++  CSG+    +V++ 
Sbjct: 653 LEVISRLQADVIFL-----SPPWG----GLNYSRDVYSLKDMMINESCSGVDLFQLVSKV 703

Query: 152 NVK 154
              
Sbjct: 704 TEN 706


>gi|76803145|ref|YP_331240.1| S-adenosylmethionine-dependent methyltransferase 1 [Natronomonas
           pharaonis DSM 2160]
 gi|76559010|emb|CAI50608.1| S-adenosylmethionine-dependent methyltransferase 1 [Natronomonas
           pharaonis DSM 2160]
          Length = 208

 Score = 36.7 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 9/75 (12%), Positives = 27/75 (36%), Gaps = 5/75 (6%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83
           + ++ +   +   G  +LD   G G  +    +   +V  LD+    ++        + +
Sbjct: 33  MRDEALTWFDIDDGDRVLDVGCGTGFATEGLLEHTDDVWGLDQSAHQLAKAY---AKFGK 89

Query: 84  Q--FSLFQATFSQLQ 96
           +   +  +    +L 
Sbjct: 90  RGTVNFHRGDAERLP 104


>gi|157369542|ref|YP_001477531.1| type 12 methyltransferase [Serratia proteamaculans 568]
 gi|157321306|gb|ABV40403.1| Methyltransferase type 12 [Serratia proteamaculans 568]
          Length = 251

 Score = 36.7 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 2/46 (4%)

Query: 51  SRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQ 94
           S    +      V A+D DP  ++  +  +  Y ++  + QA  + 
Sbjct: 56  SLRILQRFPQARVTAVDLDPLLLAIARGALAQYGDRIRIIQADLAD 101


>gi|198453432|ref|XP_001359198.2| GA16116 [Drosophila pseudoobscura pseudoobscura]
 gi|198132356|gb|EAL28342.2| GA16116 [Drosophila pseudoobscura pseudoobscura]
          Length = 479

 Score = 36.7 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96
           VILDA  G GG +  F      VIA+D D   ++  +     Y   ++     A F Q  
Sbjct: 303 VILDAFCGCGGNAIQFALTCGRVIAVDIDAEKLAMAKHNATIYGVADKIEFIHADFLQFA 362


>gi|195152013|ref|XP_002016933.1| GL21793 [Drosophila persimilis]
 gi|194111990|gb|EDW34033.1| GL21793 [Drosophila persimilis]
          Length = 479

 Score = 36.7 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96
           VILDA  G GG +  F      VIA+D D   ++  +     Y   ++     A F Q  
Sbjct: 303 VILDAFCGCGGNAIQFALTCGRVIAVDIDAEKLAMAKHNATIYGVADKIEFIHADFLQFA 362


>gi|28210208|ref|NP_781152.1| putative rRNA methylase [Clostridium tetani E88]
 gi|28202644|gb|AAO35089.1| putative rRNA methylase [Clostridium tetani E88]
          Length = 192

 Score = 36.7 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 34/85 (40%), Gaps = 9/85 (10%)

Query: 35  APGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQFS---LF 88
             G + +DAT G G  +   CK+      V + D    A+   ++ +  Y+       L 
Sbjct: 25  KKGDIAVDATMGNGNDTLFLCKLVEEEGKVYSFDIQMEALKSTEKKL--YQNNIHWAELI 82

Query: 89  QATFSQLQDYVPDKGVDGVVFDLGV 113
                 +  Y+ ++    ++F+LG 
Sbjct: 83  LDGHENMDKYLKEEP-KIILFNLGY 106


>gi|126175348|ref|YP_001051497.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella baltica
           OS155]
 gi|226725386|sp|A3D7B5|RUMA_SHEB5 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|125998553|gb|ABN62628.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shewanella baltica
           OS155]
          Length = 450

 Score = 36.7 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 2/89 (2%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82
           ++ + +  L PA  + ILD   G G +S    KMG++VI ++     V+  +   +    
Sbjct: 292 MVAQAMDWLAPALDERILDLFCGMGNFSLPLAKMGADVIGVEGVAEMVTQARVNAKANNL 351

Query: 83  EQFSLFQATFSQLQDYVPDKG-VDGVVFD 110
           ++ + F    S      P  G +D ++ D
Sbjct: 352 DKLTFFHGDLSADLSLEPWMGKIDKLLLD 380


>gi|325569856|ref|ZP_08145850.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus casseliflavus
           ATCC 12755]
 gi|325156979|gb|EGC69147.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus casseliflavus
           ATCC 12755]
          Length = 458

 Score = 36.7 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 35/100 (35%), Gaps = 17/100 (17%)

Query: 21  VPVLLEKVIALLNPAPGKVILD-----ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQ 75
             VL ++ +  L+ +  + ++D      T G      S       V  +D  P A+   Q
Sbjct: 297 TSVLYQEGVKALDLSKNETVVDAYCGVGTIG-----LSVAPYAKEVRGMDIIPQAIENAQ 351

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFD 110
           E       Q + ++      ++ +P         D ++ D
Sbjct: 352 ENAHRIGAQNTHYET--GTAEELLPKWFNEGFKPDSIIVD 389


>gi|269962459|ref|ZP_06176808.1| ribosomal protein L11 methyltransferase [Vibrio harveyi 1DA3]
 gi|269832755|gb|EEZ86865.1| ribosomal protein L11 methyltransferase [Vibrio harveyi 1DA3]
          Length = 295

 Score = 36.7 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 21/102 (20%)

Query: 17  IGDH-VPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG------SNVIALDRDPF 69
            G H    L  + +  L+   GK ++D  FG G        +         VI +D DP 
Sbjct: 140 TGTHPTTALCLEWLESLDL-SGKTVID--FGCG---SGILAIAAIKLGAGKVIGIDIDPQ 193

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDL 111
           A+   ++                 QL+ Y+P    +G++ D+
Sbjct: 194 ALQASRDNAER--------NGVADQLEVYLPQNQPEGLIADV 227


>gi|225164363|ref|ZP_03726627.1| Fmu (Sun) domain protein [Opitutaceae bacterium TAV2]
 gi|224801016|gb|EEG19348.1| Fmu (Sun) domain protein [Opitutaceae bacterium TAV2]
          Length = 226

 Score = 36.7 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 10/97 (10%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALD--------RDPFAVSCGQET 77
            I LL P  G++ILDA    GG S +         ++ALD        R    +S     
Sbjct: 32  AIDLLAPVAGELILDACAAPGGKSLAIADRMGRGRLVALDLPVQARQLRLAENLSRAPAG 91

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVS 114
           +   + QF+L Q     + + +   G D V+ D+  S
Sbjct: 92  VATERIQFNLLQPGSGAVLNKIAPHGFDAVLIDVPCS 128


>gi|323136513|ref|ZP_08071595.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Methylocystis sp. ATCC 49242]
 gi|322398587|gb|EFY01107.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Methylocystis sp. ATCC 49242]
          Length = 238

 Score = 36.7 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 22  PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQETMRD 80
           P++L +++    P PG+  LD   G  GYS +    +   V+AL+ DP   +  +  +  
Sbjct: 83  PLVLARLLQGAAPRPGEKALD--IGGAGYSAAILSGLVGEVVALESDPELAARARAGLSA 140

Query: 81  YK 82
             
Sbjct: 141 LG 142


>gi|319951686|ref|YP_004162953.1| fmu (sun) domain protein [Cellulophaga algicola DSM 14237]
 gi|319420346|gb|ADV47455.1| Fmu (Sun) domain protein [Cellulophaga algicola DSM 14237]
          Length = 408

 Score = 36.7 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 3/41 (7%)

Query: 28  VIALLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALD 65
           V   L+  PG+ ++D   GAGG   +  +  +    +IA+D
Sbjct: 216 VAEFLDVKPGQRVIDTCAGAGGKTLHIAALMENKGQLIAMD 256


>gi|229822540|ref|YP_002884066.1| Methyltransferase type 11 [Beutenbergia cavernae DSM 12333]
 gi|229568453|gb|ACQ82304.1| Methyltransferase type 11 [Beutenbergia cavernae DSM 12333]
          Length = 319

 Score = 36.7 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 14/87 (16%)

Query: 36  PGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95
           PG V++DA  G G ++    + G +V+ +DR P  ++  +E +          Q    +L
Sbjct: 101 PGSVVMDAACGTGRHTSWLAEQGYDVLGVDRSPDMLAIAREKV----PSARFAQGAVHEL 156

Query: 96  QDYVPDKGVDGVVF--------DLGVS 114
              V +  VD VV         DLG S
Sbjct: 157 P--VAEASVDLVVVTLALSHVRDLGPS 181


>gi|254511064|ref|ZP_05123131.1| NOL1/NOP2/sun family protein [Rhodobacteraceae bacterium KLH11]
 gi|221534775|gb|EEE37763.1| NOL1/NOP2/sun family protein [Rhodobacteraceae bacterium KLH11]
          Length = 387

 Score = 36.7 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 33/92 (35%), Gaps = 7/92 (7%)

Query: 26  EKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQF 85
           + VIA L+  PG  +LD   G GG + +    GS V        A       MRD   + 
Sbjct: 207 QAVIAALDLQPGMRVLDYCAGGGGKTLALAARGSGVQVF-----AHDANPGRMRDLPARA 261

Query: 86  SLFQATFSQL--QDYVPDKGVDGVVFDLGVSS 115
               A  + L           D V+ D+  S 
Sbjct: 262 QRAGADIAILTQDQVAARAPFDIVLVDVPCSG 293


>gi|256823499|ref|YP_003147462.1| type 11 methyltransferase [Kangiella koreensis DSM 16069]
 gi|256797038|gb|ACV27694.1| Methyltransferase type 11 [Kangiella koreensis DSM 16069]
          Length = 325

 Score = 36.7 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 16/28 (57%)

Query: 224 EIEELAQGLRSAEKALKAGGLLIVVSFH 251
           E  +L + L+     LK GG++ ++S H
Sbjct: 129 EYSDLKKSLQHCFNCLKPGGIISIISHH 156


>gi|220933384|ref|YP_002512283.1| sun protein [Thioalkalivibrio sp. HL-EbGR7]
 gi|219994694|gb|ACL71296.1| sun protein [Thioalkalivibrio sp. HL-EbGR7]
          Length = 432

 Score = 36.7 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 29/84 (34%), Gaps = 3/84 (3%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDYKEQFSLFQA 90
             PG  +LDA    GG +    +  +   ++ ALD D   +   +E +     +  L   
Sbjct: 241 CRPGMRVLDACAAPGGKTLHLLESVAGDLDLTALDVDAERLRRVEENLARAGRRARLVAG 300

Query: 91  TFSQLQDYVPDKGVDGVVFDLGVS 114
                  +      D ++ D   S
Sbjct: 301 DGEHPAQWHEGGAYDRILLDAPCS 324


>gi|237748441|ref|ZP_04578921.1| methyltransferase type 11 [Oxalobacter formigenes OXCC13]
 gi|229379803|gb|EEO29894.1| methyltransferase type 11 [Oxalobacter formigenes OXCC13]
          Length = 279

 Score = 36.7 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 16/95 (16%)

Query: 22  PVLLEKVIALLNPAPGKVILDATFGAGG-----YSRSFCKMGSNVIALDRDPFAVSCGQE 76
           PV     IA L    G+ +LD   G+GG      +    K   +VI +D  P  +   + 
Sbjct: 71  PV----AIAAL--QDGQTVLD--LGSGGGFDVFQAGEKVKAAGHVIGVDMTPEMLEKARH 122

Query: 77  TMRDYKEQ--FSLFQATFSQLQDY-VPDKGVDGVV 108
            +R Y+E+      +    +++   V D  VD V+
Sbjct: 123 NIRQYRERTGLDNVEFRLGEIEHLPVADNTVDVVL 157


>gi|7649806|dbj|BAA94092.1| short chain alcohol dehydrogenase [Geobacillus thermoleovorans]
          Length = 249

 Score = 36.7 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 60/186 (32%), Gaps = 40/186 (21%)

Query: 51  SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFD 110
           +R+F K G+NV+ +DRD                               +   G + +   
Sbjct: 22  ARAFAKQGANVVIIDRDIQ---------------------NGEAFAAQLQSDGFEAIFVA 60

Query: 111 LGVSSMQIDCGDRGFSFQKS-----GPLDMRMSCSGISASDVVNQANVKDLTRILGILGE 165
             V   ++D  +R   F +      G +D  ++ +G+S      +  V++   +L     
Sbjct: 61  ADV--RKVDDIER---FVQEAAGRFGRIDYLINNAGVSRWKSPYELTVEEWDDVLSTNLR 115

Query: 166 EKQASRIAHAIVKRRQSA-----PFQTTQDLSSLIQKTVYFSKNNR----IHPATRSFQA 216
               +    A   RR +         +T+ L S      Y +         H    SF  
Sbjct: 116 SAFFASREAAKYMRRNAKGGAIVNIASTRALMSEPNSEAYAASKGGLVAMTHALAVSFAD 175

Query: 217 LRIFVN 222
            RI VN
Sbjct: 176 DRIRVN 181


>gi|237745481|ref|ZP_04575961.1| 23S rRNA 5-methyluridine methyltransferase [Oxalobacter formigenes
           HOxBLS]
 gi|229376832|gb|EEO26923.1| 23S rRNA 5-methyluridine methyltransferase [Oxalobacter formigenes
           HOxBLS]
          Length = 451

 Score = 36.7 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 39/99 (39%), Gaps = 5/99 (5%)

Query: 17  IGDHV-PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQ 75
           +  H+ PVL+ + I LL       I D   G G +S    +  + V+ ++         +
Sbjct: 275 VNHHINPVLVSRAIRLLEIEKNDRIADLFCGLGNFSLPIARHAAEVVGIEGSEILTERAK 334

Query: 76  E--TMRDYKEQFSLFQATFSQL--QDYVPDKGVDGVVFD 110
           E   +   +E+         ++  +D++     D V+ D
Sbjct: 335 ESALLNGLEEKTRFETRNLFEMTVKDWIGLGPFDKVLID 373


>gi|91784217|ref|YP_559423.1| hypothetical protein Bxe_A1584 [Burkholderia xenovorans LB400]
 gi|91688171|gb|ABE31371.1| Conserved hypothetical protein [Burkholderia xenovorans LB400]
          Length = 199

 Score = 36.7 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 25/45 (55%)

Query: 34 PAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETM 78
           A G  +LD   GAG ++R F  +G  V A+DRD  A++   E +
Sbjct: 25 VAAGGAVLDVACGAGRHARFFAALGHPVTAIDRDAAALATLCEEL 69


>gi|50551677|ref|XP_503313.1| YALI0D26367p [Yarrowia lipolytica]
 gi|49649181|emb|CAG81519.1| YALI0D26367p [Yarrowia lipolytica]
          Length = 464

 Score = 36.7 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 36/101 (35%), Gaps = 6/101 (5%)

Query: 146 DVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTT--QDLSSLIQKTVYFSK 203
           D++N   + ++ R L  + +E      A    +        T   + L  +I + +    
Sbjct: 56  DILNDHELSEIHRGLEEIKKE----WAAGTFKEEEGDEDIHTANERRLGEIIGRDISGKV 111

Query: 204 NNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244
           +       +    +R++V  E+ E+   L    K L   G 
Sbjct: 112 HTGRSRNDQVATDMRLYVRKELGEIRNLLADFIKVLINRGK 152


>gi|195569943|ref|XP_002102968.1| GD19221 [Drosophila simulans]
 gi|194198895|gb|EDX12471.1| GD19221 [Drosophila simulans]
          Length = 629

 Score = 36.7 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96
           VILDA  G GG +  F      VIA+D D   ++  +     Y    +     A F Q  
Sbjct: 464 VILDAFCGCGGNAIQFANTCGRVIAVDIDAEKLAMAKHNAGIYGVAHKIEFIHADFLQFA 523


>gi|195348905|ref|XP_002040987.1| GM15294 [Drosophila sechellia]
 gi|194122592|gb|EDW44635.1| GM15294 [Drosophila sechellia]
          Length = 629

 Score = 36.7 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96
           VILDA  G GG +  F      VIA+D D   ++  +     Y    +     A F Q  
Sbjct: 464 VILDAFCGCGGNAIQFANTCGRVIAVDIDAEKLAMAKHNAGIYGVAHKIEFIHADFLQFA 523


>gi|45656700|ref|YP_000786.1| zinc binding dehydrogenase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45599936|gb|AAS69423.1| zinc binding dehydrogenase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 348

 Score = 36.7 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 8/72 (11%)

Query: 45  FGAGG---YSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYV 99
           FG GG   ++ +  +      VIALD D  A+    +   D        + +   L++  
Sbjct: 176 FGCGGLGIHAVAIARAMTKGKVIALDVDSGALENATKYGADEVVNLKEVRNSGKVLKEV- 234

Query: 100 PDKGVDGVVFDL 111
             KGVD ++ D 
Sbjct: 235 -SKGVD-LLADF 244


>gi|332188118|ref|ZP_08389848.1| ubiE/COQ5 methyltransferase family protein [Sphingomonas sp. S17]
 gi|332011832|gb|EGI53907.1| ubiE/COQ5 methyltransferase family protein [Sphingomonas sp. S17]
          Length = 228

 Score = 36.7 bits (84), Expect = 5.1,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMR 79
          ++A L P  G+ ++D   G G ++    +      VI LD D  A+   +    
Sbjct: 33 MLAALAPKAGETVVDVGCGTGSFALMLKQAEPRTQVIGLDPDAEALDIARHKAA 86


>gi|315150202|gb|EFT94218.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0012]
          Length = 456

 Score = 36.7 bits (84), Expect = 5.1,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 32/98 (32%), Gaps = 17/98 (17%)

Query: 23  VLLEKVIALLNPAPGKVILD-----ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77
           +L  + I  L+  P + ++D      T G      S  K    V  +D  P A+   +  
Sbjct: 297 ILYNEGIKALDLQPNETVVDAYCGVGTIG-----LSLAKQAHQVRGMDTIPAAIDDARFN 351

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFD 110
            +      +         +D +P         D +V D
Sbjct: 352 AKRLG--VTNTHYAVGTAEDLLPKWFKEGFKPDAIVVD 387


>gi|262199896|ref|YP_003271105.1| methyltransferase type 11 [Haliangium ochraceum DSM 14365]
 gi|262083243|gb|ACY19212.1| Methyltransferase type 11 [Haliangium ochraceum DSM 14365]
          Length = 267

 Score = 36.7 bits (84), Expect = 5.1,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 33/96 (34%), Gaps = 3/96 (3%)

Query: 29  IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLF 88
           I  L       +LD   G G +S    + G +V + D  P  VS   E  R         
Sbjct: 54  IEQLKARGKTKVLDVATGTGFHSIRLLEAGFDVTSADGSPEMVSKAFENARRRGHILKTV 113

Query: 89  QATFSQLQDYVPDKGVDGVVFDLGVS-SMQIDCGDR 123
           QA +    +       D V+  LG S +      DR
Sbjct: 114 QADWR-WLNRDIQGKYDAVIC-LGNSFTHLFAEADR 147


>gi|227519503|ref|ZP_03949552.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis TX0104]
 gi|227073028|gb|EEI10991.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis TX0104]
          Length = 456

 Score = 36.7 bits (84), Expect = 5.1,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 32/98 (32%), Gaps = 17/98 (17%)

Query: 23  VLLEKVIALLNPAPGKVILD-----ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77
           +L  + I  L+  P + ++D      T G      S  K    V  +D  P A+   +  
Sbjct: 297 ILYNEGIKALDLQPNETVVDAYCGVGTIG-----LSLAKQAHQVRGMDTIPAAIDDARFN 351

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDK-----GVDGVVFD 110
            +      +         +D +P         D +V D
Sbjct: 352 AKRLG--VTNTHYAVGTAEDLLPKWFKEGFKPDAIVVD 387


>gi|323453896|gb|EGB09767.1| selenoprotein [Aureococcus anophagefferens]
          Length = 279

 Score = 36.7 bits (84), Expect = 5.1,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 28/81 (34%), Gaps = 9/81 (11%)

Query: 33  NPAPGKVILDATFG-AGG----YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSL 87
           N  PG+V++D   G   G     +         VI +D  P  +S  +     Y    S 
Sbjct: 27  NLKPGEVVVD--LGSGAGVDCFAAAKLVGPSGRVIGVDMTPEMLSRARAAAAPYGNVVSF 84

Query: 88  FQATFSQLQDYVPDKGVDGVV 108
                  L   V D  VD V+
Sbjct: 85  RLGEIEHLP--VGDGAVDCVI 103


>gi|111224401|ref|YP_715195.1| putative methyltransferase [Frankia alni ACN14a]
 gi|111151933|emb|CAJ63655.1| Putative methyltransferase [Frankia alni ACN14a]
          Length = 281

 Score = 36.7 bits (84), Expect = 5.1,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 22  PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77
           PV + +++    P P  V LDA  G G Y+      G  VI +DR P  ++  +  
Sbjct: 64  PV-VREIVD---PLPVGVALDAACGTGRYAEFLAGRGHRVIGVDRSPDMLARARTR 115


>gi|294828297|ref|NP_713534.2| Zn-dependent alcohol dehydrogenase [Leptospira interrogans serovar
           Lai str. 56601]
 gi|293386148|gb|AAN50552.2| Zn-dependent alcohol dehydrogenase [Leptospira interrogans serovar
           Lai str. 56601]
          Length = 343

 Score = 36.7 bits (84), Expect = 5.2,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 8/72 (11%)

Query: 45  FGAGG---YSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYV 99
           FG GG   ++ +  +      VIALD D  A+    +   D        + +   L++  
Sbjct: 171 FGCGGLGIHAVAIARAMTKGKVIALDVDSGALENATKYGADEVVNLKEVRNSGKVLKEV- 229

Query: 100 PDKGVDGVVFDL 111
             KGVD ++ D 
Sbjct: 230 -SKGVD-LLADF 239


>gi|319787470|ref|YP_004146945.1| RNA methyltransferase, TrmA family [Pseudoxanthomonas suwonensis
           11-1]
 gi|317465982|gb|ADV27714.1| RNA methyltransferase, TrmA family [Pseudoxanthomonas suwonensis
           11-1]
          Length = 449

 Score = 36.7 bits (84), Expect = 5.3,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 59/157 (37%), Gaps = 25/157 (15%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83
           ++ + + +L+ +P   +LD   G G ++    +    V+ ++ DP  V+  +       E
Sbjct: 291 MIARALEMLDTSPDHRVLDLFCGLGNFTLPLARQVREVVGVEGDPGLVARARAN----AE 346

Query: 84  QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGIS 143
           +  L  A F                 DL           RG  + + G   + +      
Sbjct: 347 RNGLANARF--------------FAADL-------TQDQRGTPWMRQGFDRLLLDPPRSG 385

Query: 144 ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180
           A +V+ Q  ++D+ RI+ +       +R A  +V  R
Sbjct: 386 AEEVLKQLPLQDIDRIVYVSCHPGSLARDAGFLVNER 422


>gi|158313747|ref|YP_001506255.1| methyltransferase type 11 [Frankia sp. EAN1pec]
 gi|158109152|gb|ABW11349.1| Methyltransferase type 11 [Frankia sp. EAN1pec]
          Length = 304

 Score = 36.7 bits (84), Expect = 5.3,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 30/83 (36%), Gaps = 4/83 (4%)

Query: 32  LNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91
           L  APG  I+D   G+G +S +  + G  V  +D    A+   +                
Sbjct: 74  LGLAPGSRIIDVPCGSGRHSLALAERGHRVTGVDLSAEAIEHARRAAAATGTAVEFVLG- 132

Query: 92  FSQLQDYVPDKGVDGVVFDLGVS 114
              +++  P    D  V  LG S
Sbjct: 133 --DMREIAPSGSFDAAVC-LGNS 152


>gi|296447122|ref|ZP_06889054.1| Methyltransferase type 12 [Methylosinus trichosporium OB3b]
 gi|296255391|gb|EFH02486.1| Methyltransferase type 12 [Methylosinus trichosporium OB3b]
          Length = 208

 Score = 36.7 bits (84), Expect = 5.4,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 4/68 (5%)

Query: 45  FGAG-GY-SRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP 100
            G+G G+ + +  +     +  A+D  P   +   E + +   + +  +A F        
Sbjct: 55  LGSGPGHLACAILRRCRIESYHAIDFSPAMHALAHEHLAEASSRVTFVEADFRSNSWAAG 114

Query: 101 DKGVDGVV 108
             GVD VV
Sbjct: 115 LAGVDAVV 122


>gi|167623152|ref|YP_001673446.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella halifaxensis
           HAW-EB4]
 gi|226725389|sp|B0TK00|RUMA_SHEHH RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|167353174|gb|ABZ75787.1| RNA methyltransferase, TrmA family [Shewanella halifaxensis
           HAW-EB4]
          Length = 445

 Score = 36.7 bits (84), Expect = 5.4,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 2/89 (2%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK- 82
           ++ + +  L+P   + +LD   G G +S    K G+ VI ++     V   +   +    
Sbjct: 287 MVSQAVEWLSPKADERVLDLFCGIGNFSLPLAKDGAEVIGVEGVQAMVEQARINAKQSGL 346

Query: 83  EQFSLFQATFS-QLQDYVPDKGVDGVVFD 110
           ++ S + A  S  L        VD ++ D
Sbjct: 347 DKVSFYHADLSADLSKEPWLGKVDKMLID 375


>gi|120435407|ref|YP_861093.1| ribosomal RNA small subunit methyltransferase B [Gramella forsetii
           KT0803]
 gi|117577557|emb|CAL66026.1| ribosomal RNA small subunit methyltransferase B [Gramella forsetii
           KT0803]
          Length = 403

 Score = 36.7 bits (84), Expect = 5.4,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 3/43 (6%)

Query: 26  EKVIALLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALD 65
           ++V  LL+  PG  ++D   GAGG   +  +  +    +IALD
Sbjct: 214 QRVAELLDVKPGMRVVDTCAGAGGKTLHLAALMENKGQIIALD 256


>gi|27364635|ref|NP_760163.1| ribosomal protein L11 methyltransferase [Vibrio vulnificus CMCP6]
 gi|320155029|ref|YP_004187408.1| ribosomal protein L11 methyltransferase [Vibrio vulnificus
           MO6-24/O]
 gi|38605292|sp|Q8DD03|PRMA_VIBVU RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|27360780|gb|AAO09690.1| ribosomal protein L11 methyltransferase [Vibrio vulnificus CMCP6]
 gi|319930341|gb|ADV85205.1| ribosomal protein L11 methyltransferase [Vibrio vulnificus
           MO6-24/O]
          Length = 295

 Score = 36.7 bits (84), Expect = 5.5,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 39/102 (38%), Gaps = 21/102 (20%)

Query: 17  IGDH-VPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS------NVIALDRDPF 69
            G H    L  + +  L+   GK ++D  FG G        + +       VI +D DP 
Sbjct: 140 TGTHPTTALCLEWLESLDL-SGKTVID--FGCG---SGILAIAAIKLGAEKVIGIDIDPQ 193

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDL 111
           A+   ++  +              QL  Y+P    +G++ D+
Sbjct: 194 ALLASKDNAQR--------NGVADQLDVYLPQDQPEGLLADV 227


>gi|324999674|ref|ZP_08120786.1| methylase involved in ubiquinone/menaquinone biosynthesis
           [Pseudonocardia sp. P1]
          Length = 413

 Score = 36.7 bits (84), Expect = 5.5,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 28/71 (39%), Gaps = 4/71 (5%)

Query: 46  GAGGYSRSFCK--MGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG 103
           G G  + +      G+ V+A+D     ++      +++  + S   A    L +   +  
Sbjct: 64  GTGVSTEALLTTVKGAEVVAVDASTEMLAVA--RRKNWSPRVSFVHAKLETLAEAGIEGP 121

Query: 104 VDGVVFDLGVS 114
            DG++    VS
Sbjct: 122 FDGILASYLVS 132


>gi|197121748|ref|YP_002133699.1| methyltransferase type 11 [Anaeromyxobacter sp. K]
 gi|196171597|gb|ACG72570.1| Methyltransferase type 11 [Anaeromyxobacter sp. K]
          Length = 244

 Score = 36.7 bits (84), Expect = 5.5,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 44/129 (34%), Gaps = 19/129 (14%)

Query: 26  EKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDYK 82
           + V+  L    G V  DA  G G +S    +       V A+D +P  ++  +E  RD  
Sbjct: 77  DAVVEALRLPEGGVACDAGAGPGYFSLRMARAVGPRGRVYAIDVEPRMIALLRERARDAG 136

Query: 83  -EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSG 141
            +      +T       +P +  D ++                F     G  D+R   S 
Sbjct: 137 VDNVHPLLST--DGAPALPPEPCDAILVVN------------TFHHFHDGAADLRRLASR 182

Query: 142 I-SASDVVN 149
           +     +VN
Sbjct: 183 LKPGGRLVN 191


>gi|55379669|ref|YP_137519.1| methyltransferase [Haloarcula marismortui ATCC 43049]
 gi|55232394|gb|AAV47813.1| methyltransferase [Haloarcula marismortui ATCC 43049]
          Length = 252

 Score = 36.7 bits (84), Expect = 5.5,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 11/82 (13%)

Query: 28  VIALLNPAPGKVILDATFGAG-GY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQF 85
           V+ LL+P PG+ +LD   G G G+ +      G+ V+ +D    A +      RD     
Sbjct: 25  VVDLLDPHPGEQVLD--VGCGTGHLTAEIADSGAEVVGID----ASAEMVAQARDAYPTL 78

Query: 86  SLFQATFSQLQDYVPDKGVDGV 107
           +  Q   + ++ Y  D+  D V
Sbjct: 79  TFEQ---ADVRSYTADRPFDAV 97


>gi|19745534|ref|NP_606670.1| SAM-dependent methyltransferase [Streptococcus pyogenes MGAS8232]
 gi|21909811|ref|NP_664079.1| SAM-dependent methyltransferase [Streptococcus pyogenes MGAS315]
 gi|28896496|ref|NP_802846.1| SAM-dependent methyltransferase [Streptococcus pyogenes SSI-1]
 gi|139474349|ref|YP_001129065.1| SAM-dependent methyltransferase [Streptococcus pyogenes str.
           Manfredo]
 gi|306827944|ref|ZP_07461211.1| rRNA methylase [Streptococcus pyogenes ATCC 10782]
 gi|19747654|gb|AAL97169.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232]
 gi|21903997|gb|AAM78882.1| conserved hypothetical protein [Streptococcus pyogenes MGAS315]
 gi|28811750|dbj|BAC64679.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1]
 gi|134272596|emb|CAM30863.1| putative rRNA methylase [Streptococcus pyogenes str. Manfredo]
 gi|304429863|gb|EFM32905.1| rRNA methylase [Streptococcus pyogenes ATCC 10782]
          Length = 184

 Score = 36.7 bits (84), Expect = 5.5,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 2/72 (2%)

Query: 43  ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQLQDYVPD 101
           AT G G  +    ++   V A D    A+    E +         L  A    +  YV +
Sbjct: 26  ATMGNGNDTAFLAQLAKKVYAFDVQEQAIRKTSERLAQLGLSNAELILAGHEAVDQYVTE 85

Query: 102 KGVDGVVFDLGV 113
             V   +F+LG 
Sbjct: 86  P-VRAAIFNLGY 96


>gi|312129034|ref|YP_003996374.1| fmu (sun) domain protein [Leadbetterella byssophila DSM 17132]
 gi|311905580|gb|ADQ16021.1| Fmu (Sun) domain protein [Leadbetterella byssophila DSM 17132]
          Length = 395

 Score = 36.7 bits (84), Expect = 5.6,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 39/96 (40%), Gaps = 10/96 (10%)

Query: 26  EKVIALLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82
           +++   L+P  G+ I+D   GAGG   +     +  + ++ALD +   +   ++     +
Sbjct: 209 QEIAHFLDPQAGEFIVDTCAGAGGKTLHLADLSRNKAKILALDVEEGKLEELEKRAA--R 266

Query: 83  EQFSLFQA---TFSQLQDYVPDKGVDGVVFDLGVSS 115
            + S  +        L  Y      D V+ D+  S 
Sbjct: 267 NRVSQVETSLWNNDILDQYRGQ--ADAVLMDVPCSG 300


>gi|240281250|gb|EER44753.1| s-adenosylmethionine (SAM)-dependent methyltransferase [Ajellomyces
           capsulatus H143]
 gi|325092258|gb|EGC45568.1| s-adenosylmethionine (SAM)-dependent methyltransferase [Ajellomyces
           capsulatus H88]
          Length = 288

 Score = 36.7 bits (84), Expect = 5.6,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 43/102 (42%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPF 69
           S+  +      VP L  KV+  LNP P   +LD   G G ++ SF     +V+ +D  P 
Sbjct: 15  SAEAYQESAAFVPKLAHKVLQYLNPQPTDRVLDVGCGDGKFTSSFIPHIKSVLGVDASPS 74

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDL 111
            +S  ++     K  F +    +   +  + +   D V  +L
Sbjct: 75  MISSAKQHYGIPKADFRVVDCRYLDREQDILNGAWDKVSLEL 116


>gi|153004217|ref|YP_001378542.1| type 11 methyltransferase [Anaeromyxobacter sp. Fw109-5]
 gi|152027790|gb|ABS25558.1| Methyltransferase type 11 [Anaeromyxobacter sp. Fw109-5]
          Length = 217

 Score = 36.7 bits (84), Expect = 5.6,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 37/86 (43%), Gaps = 5/86 (5%)

Query: 26  EKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK 82
           ++V++ L   PG V  DA  G G ++    +       V A+D D   ++  ++  R+  
Sbjct: 49  DEVVSALGLRPGDVACDAGAGPGYFAIRLARAVGPTGRVHAIDVDARMIALLEQRAREAG 108

Query: 83  EQFSLFQATFSQLQDYVPDKGVDGVV 108
              +  +   +   + +P +  D ++
Sbjct: 109 --VTNVRPLHAPEGEGLPPEPCDAIL 132


>gi|15674524|ref|NP_268698.1| SAM-dependent methyltransferase [Streptococcus pyogenes M1 GAS]
 gi|71910130|ref|YP_281680.1| SAM-dependent methyltransferase [Streptococcus pyogenes MGAS5005]
 gi|13621627|gb|AAK33419.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS]
 gi|71852912|gb|AAZ50935.1| SAM-dependent methyltransferase [Streptococcus pyogenes MGAS5005]
          Length = 184

 Score = 36.7 bits (84), Expect = 5.6,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 2/72 (2%)

Query: 43  ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQLQDYVPD 101
           AT G G  +    ++   V A D    A+    E +         L  A    +  YV +
Sbjct: 26  ATMGNGNDTAFLAQLAKKVYAFDVQEQAIRKTSERLAQLGLSNAELILAGHEAVDQYVTE 85

Query: 102 KGVDGVVFDLGV 113
             V   +F+LG 
Sbjct: 86  P-VRAAIFNLGY 96


>gi|299535356|ref|ZP_07048678.1| SAM-dependent methyltransferase [Lysinibacillus fusiformis ZC1]
 gi|298729117|gb|EFI69670.1| SAM-dependent methyltransferase [Lysinibacillus fusiformis ZC1]
          Length = 191

 Score = 36.7 bits (84), Expect = 5.6,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 31/87 (35%), Gaps = 8/87 (9%)

Query: 33  NPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYK--EQFS 86
           N   G  ++DAT G  G+   F          V A D    AV      + D+    +  
Sbjct: 17  NIEEGDTVVDATAGN-GHDTLFLAQLVGDEGQVYAFDVQKEAVDATLLRLLDHGLEHRAL 75

Query: 87  LFQATFSQLQDYVPDKGVDGVVFDLGV 113
           +      ++  +V    V   +F+LG 
Sbjct: 76  VLNKGHEEVTQFVHKP-VTAAIFNLGY 101


>gi|298705525|emb|CBJ28792.1| similar to trimethylguanosine synthase homolog [Ectocarpus
           siliculosus]
          Length = 548

 Score = 36.7 bits (84), Expect = 5.6,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 39/118 (33%), Gaps = 15/118 (12%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96
           V++D   G GG +  F  +   V A+D DP  +   +     Y   ++            
Sbjct: 243 VVVDPFVGCGGNAVQFALVAHLVFAIDIDPVKLEHARRNAAIYGVEDRIEFILG---DAM 299

Query: 97  DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDM-RMSCSGISASDVVNQANV 153
             +P    D V       S          S+Q S   D+  M    +SA ++   A  
Sbjct: 300 KVLPTLKADAVFL-----SPPWGGP----SYQGSKTFDLDSMIPHPLSALEMFRAARE 348


>gi|22297753|ref|NP_681000.1| RNA-binding protein [Thermosynechococcus elongatus BP-1]
 gi|22293930|dbj|BAC07762.1| RNA-binding protein [Thermosynechococcus elongatus BP-1]
          Length = 442

 Score = 36.7 bits (84), Expect = 5.6,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 7/61 (11%)

Query: 30  ALLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFS 86
            LL+P PG+V++DA    GG   +     +    VIA DR P  +      +   +++  
Sbjct: 246 HLLDPQPGEVVIDACAAPGGKTTHIAELMEDQGRVIACDRSPHRL----RKLAQNRDRLG 301

Query: 87  L 87
           L
Sbjct: 302 L 302


>gi|325287453|ref|YP_004263243.1| Fmu (Sun) domain-containing protein [Cellulophaga lytica DSM 7489]
 gi|324322907|gb|ADY30372.1| Fmu (Sun) domain protein [Cellulophaga lytica DSM 7489]
          Length = 403

 Score = 36.7 bits (84), Expect = 5.7,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 3/39 (7%)

Query: 30  ALLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALD 65
             L+  PG+ ++D   GAGG   +  +  +    +IALD
Sbjct: 218 HFLDVKPGQRVVDTCAGAGGKTLHIAALMENKGQLIALD 256


>gi|317485118|ref|ZP_07944000.1| methyltransferase domain-containing protein [Bilophila wadsworthia
           3_1_6]
 gi|316923653|gb|EFV44857.1| methyltransferase domain-containing protein [Bilophila wadsworthia
           3_1_6]
          Length = 408

 Score = 36.7 bits (84), Expect = 5.7,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 18/96 (18%)

Query: 22  PVLLEKVIALLNPAPGKVILDATFGAGG-----YSRSFCKMGSNVIALDRDPFAVSCGQE 76
           PV     IA L    G+ ++D   G+GG      +    K    VI +D  P  ++  ++
Sbjct: 201 PV----AIAAL--REGQTVVD--LGSGGGFDVFQAGEKVKASGRVIGVDMTPEMLAKARK 252

Query: 77  TMRDYKEQFSLFQATFSQLQDY----VPDKGVDGVV 108
            +  Y+++  L    F  L +     VPD  VD V+
Sbjct: 253 NIGQYRQRTGLDNVEFR-LGEIECLPVPDNSVDVVL 287


>gi|283782180|ref|YP_003372935.1| methyltransferase type 11 [Pirellula staleyi DSM 6068]
 gi|283440633|gb|ADB19075.1| Methyltransferase type 11 [Pirellula staleyi DSM 6068]
          Length = 245

 Score = 36.7 bits (84), Expect = 5.7,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 8/88 (9%)

Query: 26  EKVIALLNPAPGKVILDATFGAG-GYSRSFCKMG----SNVIALDRDPFAVSCGQETMRD 80
           ++++A L   PG  + D   GAG GY  +           VIA+D     +    +   D
Sbjct: 80  DEIVAALALTPGATVAD--IGAGTGYMVAHLSKAAGKDGTVIAIDASTQMIEYLTKRSAD 137

Query: 81  YKEQFSLFQATFSQLQDYVPDKGVDGVV 108
                 +           +    VDGV+
Sbjct: 138 LGP-AKIVPRMVRPDDPEIQPDSVDGVL 164


>gi|255932973|ref|XP_002557957.1| Pc12g11390 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211582576|emb|CAP80766.1| Pc12g11390 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 236

 Score = 36.7 bits (84), Expect = 5.7,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 67/194 (34%), Gaps = 38/194 (19%)

Query: 33  NPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMRDYK--EQFSLF 88
            PA   +++DA  GAGG + +F   G    + A++++P  + C +   + Y   ++ + F
Sbjct: 68  APAGRSILVDAFAGAGGNTIAFALTGKWKRIYAIEKNPAVLKCAKHNAKVYGVEDKITWF 127

Query: 89  QA-TFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDV 147
           +   F  L++ + +     VVF     S           ++     +++           
Sbjct: 128 EGDCFEILKNQLKELAPYSVVFA----SPPWGGPG----YRSDRVFNLK----------- 168

Query: 148 VNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRI 207
                   L R+             +  +V          T DL  + +      K   +
Sbjct: 169 --TMEPYSLQRLYDEYS------VFSKHMVLY-----IPRTSDLKQIAKLVPAGGKATVM 215

Query: 208 HPATR-SFQALRIF 220
           H     + +AL IF
Sbjct: 216 HYCMEGASKALCIF 229


>gi|194289304|ref|YP_002005211.1| hypothetical protein RALTA_A1180 [Cupriavidus taiwanensis LMG
          19424]
 gi|193223139|emb|CAQ69144.1| conserved hypothetical protein [Cupriavidus taiwanensis LMG
          19424]
          Length = 195

 Score = 36.7 bits (84), Expect = 5.8,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 22/51 (43%)

Query: 35 APGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQF 85
           PG  +LD   G G ++      G  V+A+DRD  A++     +     + 
Sbjct: 23 RPGARVLDLACGGGRHAAWLAARGHQVLAVDRDADAIAGLPAGLTGVTGRV 73


>gi|220916542|ref|YP_002491846.1| Methyltransferase type 11 [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219954396|gb|ACL64780.1| Methyltransferase type 11 [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 231

 Score = 36.7 bits (84), Expect = 5.8,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 44/129 (34%), Gaps = 19/129 (14%)

Query: 26  EKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS---NVIALDRDPFAVSCGQETMRDYK 82
           + V+  L    G V  DA  G G +S    +       V A+D +P  ++  +E  RD  
Sbjct: 64  DAVVEALRLPDGGVACDAGAGPGYFSLRMARAVGPRGRVYAIDVEPRMIALLRERARDAG 123

Query: 83  -EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSG 141
            +      +T       +P +  D ++                F     G  D+R   S 
Sbjct: 124 VDNVHPLLST--DGAPALPPEPCDAILVVN------------TFHHFHDGAADLRRLASR 169

Query: 142 I-SASDVVN 149
           +     +VN
Sbjct: 170 LKPGGRLVN 178


>gi|319407809|emb|CBI81460.1| SUN-family protein [Bartonella sp. 1-1C]
          Length = 456

 Score = 36.7 bits (84), Expect = 5.9,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 5/69 (7%)

Query: 48  GGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSL-FQATFSQLQDYVPDKGVDG 106
           GG +      G++V+ALD      +   + +R+  ++ +         L+++ PD+  D 
Sbjct: 266 GGKTAQLALQGADVMALD----ISANRLKRLRENMDRLNFSVHYWLGDLREFHPDQLFDA 321

Query: 107 VVFDLGVSS 115
           V+ D   SS
Sbjct: 322 VLLDTPCSS 330


>gi|190894349|ref|YP_001984642.1| ribitol 2-dehydrogenase [Rhizobium etli CIAT 652]
 gi|190700010|gb|ACE94092.1| ribitol 2-dehydrogenase protein [Rhizobium etli CIAT 652]
 gi|327191868|gb|EGE58863.1| ribitol 2-dehydrogenase protein [Rhizobium etli CNPAF512]
          Length = 241

 Score = 36.7 bits (84), Expect = 5.9,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 9/69 (13%)

Query: 51  SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFD 110
           + +    G  V+ +DRD  A++     + +      L     +     +     DG++  
Sbjct: 23  TEAIIAAGGTVVMIDRDEAALAAACGRLGEKAIALPLDLLNHADCAGLL-----DGILSK 77

Query: 111 LGVSSMQID 119
           +G    Q+D
Sbjct: 78  VG----QLD 82


>gi|115400383|ref|XP_001215780.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114191446|gb|EAU33146.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 173

 Score = 36.7 bits (84), Expect = 5.9,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 61/149 (40%), Gaps = 17/149 (11%)

Query: 35  APGK--VILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMRDYK--EQFSLF 88
           AP    V++DA  GAGG + +F + G    + A++++P  + C +   + Y   ++ + F
Sbjct: 5   APDGRSVLIDAFAGAGGNAIAFARSGKWKRIYAIEKNPSVLLCAKHNAKIYGVADKITWF 64

Query: 89  QA-TFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDV 147
           +   F  +++ + D     VVF     S           ++     ++R +    S + +
Sbjct: 65  EGDCFEIIKNQLKDLAPYSVVFA----SPPWGGPG----YRSDKIFNLR-TMEPYSLATL 115

Query: 148 VNQANVKDLTRILGILGEEKQASRIAHAI 176
             + +      I+  L       ++A  +
Sbjct: 116 YQEYSAFS-EHIVLFLPRTSDLRQLAKVV 143


>gi|77734465|emb|CAJ26221.1| hypothetical protein [Thermotoga naphthophila RKU-10]
          Length = 203

 Score = 36.7 bits (84), Expect = 6.0,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 18/92 (19%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR-------- 79
           ++   +   GK +LD   G G ++    K G  V+ +D  P  ++  +E  +        
Sbjct: 6   ILENFHIR-GKKVLDVACGEGTFAVEIAKQGFEVVGVDLSPEMLNFARERAKEESVPVIF 64

Query: 80  --------DYKEQFSLFQATFSQLQDYVPDKG 103
                   D+ E+F +    F  L +Y+ +  
Sbjct: 65  LKKDMRELDFHEEFDIVTCWFDSL-NYLLEYK 95


>gi|325696391|gb|EGD38282.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           SK160]
          Length = 456

 Score = 36.3 bits (83), Expect = 6.1,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 36/93 (38%), Gaps = 12/93 (12%)

Query: 23  VLLEKVIALLNPAPGKVILD-----ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77
           VL E+ +  L+      ++D      T G      +F K   ++  +D  P A+   +  
Sbjct: 291 VLYEEAVKALDVTKEDHLIDAYCGVGTIGF-----AFAKRVKSLRGMDIIPEAIEDAKRN 345

Query: 78  MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFD 110
            +      +L++A     ++ +P    +G   D
Sbjct: 346 AKKMGFDNTLYEA--GTAEEIIPRWYAEGYRAD 376


>gi|253576645|ref|ZP_04853973.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251844059|gb|EES72079.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 198

 Score = 36.3 bits (83), Expect = 6.1,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 10/91 (10%)

Query: 41  LDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETM----RDYKEQFSLFQATFS 93
           +DAT G G  +    K       V A D  P A++  +  +     D     +L QA+ +
Sbjct: 25  VDATAGTGADTLFLAKACGPKGRVFAFDIQPQALALTKARLDKEPADSIAGVTLLQASHA 84

Query: 94  QLQDYVPDK---GVDGVVFDLGVSSMQIDCG 121
            +   +P      +  V+F+LG    +    
Sbjct: 85  DMAAVLPADVHGRLGAVMFNLGYLPAEGADP 115


>gi|117619085|ref|YP_855944.1| tRNA and rRNA cytosine-C5-methylase [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117560492|gb|ABK37440.1| tRNA and rRNA cytosine-C5-methylase [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 437

 Score = 36.3 bits (83), Expect = 6.1,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 46/112 (41%), Gaps = 15/112 (13%)

Query: 26  EKVIALLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82
           ++V A L  +PG  ++DA  GAGG   +  +  +    ++A+D + + +   ++  R   
Sbjct: 249 QQVAAALEVSPGMRVIDACAGAGGKTLHLAAMMEGKGRLLAMDVEEWKLENLKQRARRAG 308

Query: 83  -EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQI----------DCGDR 123
                    T S+    + +   D V+ D+  S + +          D  +R
Sbjct: 309 AHNVETRVITSSKTVKRLKE-SADRVLLDVPCSGLGVLKRNPDAKWRDTAER 359


>gi|116251330|ref|YP_767168.1| dimethyladenosine transferase [Rhizobium leguminosarum bv. viciae
           3841]
 gi|118600891|sp|Q1MJ01|RSMA_RHIL3 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
           AltName: Full=16S rRNA
           (adenine(1518)-N(6)/adenine(1519)-N(6))-
           dimethyltransferase; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName: Full=S-adenosylmethionine-6-N',
           N'-adenosyl(rRNA) dimethyltransferase
 gi|115255978|emb|CAK07059.1| putative dimethyladenosine transferase [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 275

 Score = 36.3 bits (83), Expect = 6.1,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 6/55 (10%)

Query: 42  DATF-----GAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYKEQFSLFQA 90
           DAT      G GG +R+   +G+  VIA++RD   +    E    Y  +  + + 
Sbjct: 48  DATVFEVGPGPGGLTRAILALGARKVIAIERDTRCLPALAEIADHYPGRLEVIEG 102


>gi|150398714|ref|YP_001329181.1| Fmu (Sun) domain-containing protein [Sinorhizobium medicae WSM419]
 gi|150030229|gb|ABR62346.1| Fmu (Sun) domain protein [Sinorhizobium medicae WSM419]
          Length = 429

 Score = 36.3 bits (83), Expect = 6.1,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 31/86 (36%), Gaps = 5/86 (5%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84
           V  L+ P  G+ +LD   G GG + +          V A D D   ++   E ++    +
Sbjct: 223 VADLVFPREGEQVLDYCAGGGGKTLAISAAMNNKGQVHAYDADRKRLAPIIERLKRAGTR 282

Query: 85  FSLFQATFSQLQDYVPDKGVDGVVFD 110
                 T   L   V     D V+ D
Sbjct: 283 NVQVHETAGSLASLVGR--ADRVLVD 306


>gi|74318405|ref|YP_316145.1| DNA primase [Thiobacillus denitrificans ATCC 25259]
 gi|74057900|gb|AAZ98340.1| DNA primase [Thiobacillus denitrificans ATCC 25259]
          Length = 565

 Score = 36.3 bits (83), Expect = 6.1,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 47/142 (33%), Gaps = 24/142 (16%)

Query: 43  ATFGAG---GYSRSFCKMGSNV-IALDRDPFAVSCGQ-------ETMRDYKEQFSLFQAT 91
           AT G      ++R+  +    +  A D D               E ++D KE   LF   
Sbjct: 271 ATLGTATTPVHARTLLRHSDRLVYAFDGDAAGRKAAWRALENSLEALQDGKEVSFLFLPE 330

Query: 92  FSQLQDYVPDKGVDGVVFDLG-----VSSMQIDCGDRGFSFQKSGPLDMRMSCSGI--SA 144
                 Y+ D G D  +  L      +S+  +    RG        LD +   + +   A
Sbjct: 331 GEDPDSYIRDHGCDAFLRLLDNETLPLSAFLMRELARG------RRLDTQEGQATLLKDA 384

Query: 145 SDVVNQANVKDLTRILGILGEE 166
             ++ +     L R++     E
Sbjct: 385 KPLLEKIGAPLLARLIQRQIAE 406


>gi|331084302|ref|ZP_08333407.1| hypothetical protein HMPREF0992_02331 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330401837|gb|EGG81414.1| hypothetical protein HMPREF0992_02331 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 190

 Score = 36.3 bits (83), Expect = 6.2,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 1/73 (1%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETM-RDYKE 83
           L++V   +       ILD   GAG +S +  K G+ V   D     +   +E   +++ E
Sbjct: 46  LKQVYEEMQIDEHTRILDIGCGAGRFSLALAKSGAQVTGTDVSSEMIMAAKELAEKEHLE 105

Query: 84  QFSLFQATFSQLQ 96
             S F A ++ L 
Sbjct: 106 NVSFFHADWASLD 118


>gi|319791338|ref|YP_004152978.1| sun protein [Variovorax paradoxus EPS]
 gi|315593801|gb|ADU34867.1| sun protein [Variovorax paradoxus EPS]
          Length = 456

 Score = 36.3 bits (83), Expect = 6.2,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 8/90 (8%)

Query: 29  IALLNPAPGKV----ILDATFGAGGYSRSFCKMGS----NVIALDRDPFAVSCGQETMRD 80
           +  L PA   V    +LDA    GG +    ++       VIAL+ DP       ET+  
Sbjct: 254 LEGLLPAKPGVAPLRVLDACAAPGGKTAHLLELAGPGAAEVIALEVDPIRSRRIDETLAR 313

Query: 81  YKEQFSLFQATFSQLQDYVPDKGVDGVVFD 110
              Q  +  A  ++  D+      D ++ D
Sbjct: 314 LGLQAKVVVADAARPADWWDGTPFDAILLD 343


>gi|258574653|ref|XP_002541508.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
 gi|237901774|gb|EEP76175.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
          Length = 175

 Score = 36.3 bits (83), Expect = 6.2,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 5/76 (6%)

Query: 39  VILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYK--EQFSLFQA-TFS 93
           +++DA  G GG + +F +      V A+++DP  + C +   + Y   ++ + F+   F 
Sbjct: 76  IMIDAFAGVGGNAIAFARSNKWKRVYAIEKDPAVLQCAKHNAKIYGVEDKITWFEGDCFE 135

Query: 94  QLQDYVPDKGVDGVVF 109
            ++ Y+ D G   V+F
Sbjct: 136 TIRLYLKDLGPYSVIF 151


>gi|303257419|ref|ZP_07343432.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47]
 gi|331000630|ref|ZP_08324285.1| hypothetical protein HMPREF9439_01933 [Parasutterella
           excrementihominis YIT 11859]
 gi|302859776|gb|EFL82854.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47]
 gi|329570902|gb|EGG52610.1| hypothetical protein HMPREF9439_01933 [Parasutterella
           excrementihominis YIT 11859]
          Length = 561

 Score = 36.3 bits (83), Expect = 6.3,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 4/55 (7%)

Query: 26  EKVIALLNPAPGKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVSCGQETM 78
           ++++  L   PG   LD   G+G  +      +MG  +  +D DP AV   +  +
Sbjct: 146 QELLDSLEAKPGASFLDPCCGSG--TFLILAQEMGLKICGMDSDPIAVMIAKANL 198


>gi|312796682|ref|YP_004029604.1| Tellurite resistance protein tehB [Burkholderia rhizoxinica HKI
          454]
 gi|312168457|emb|CBW75460.1| Tellurite resistance protein tehB [Burkholderia rhizoxinica HKI
          454]
          Length = 206

 Score = 36.3 bits (83), Expect = 6.4,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 6/59 (10%)

Query: 32 LNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQA 90
          L P     +LD   G G + R F + G  V+ALDRD  A++   E          +  A
Sbjct: 16 LVPR-DGTVLDVACGRGRHVRWFAQRGHPVVALDRDAQALAALAEW-----PTVRIVHA 68


>gi|330934993|ref|XP_003304787.1| hypothetical protein PTT_17463 [Pyrenophora teres f. teres 0-1]
 gi|311318443|gb|EFQ87106.1| hypothetical protein PTT_17463 [Pyrenophora teres f. teres 0-1]
          Length = 240

 Score = 36.3 bits (83), Expect = 6.4,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 10/74 (13%)

Query: 11  SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDP 68
             I + I  H+     +      P    VI+DA  G GG S +  + G    V A+++DP
Sbjct: 54  EPIANKIAAHIS----ES----APKEKTVIIDAFAGVGGNSIALARSGRWERVFAIEKDP 105

Query: 69  FAVSCGQETMRDYK 82
             + C +     Y 
Sbjct: 106 KTLMCAKHNAEIYG 119


>gi|304404973|ref|ZP_07386633.1| putative rRNA methylase [Paenibacillus curdlanolyticus YK9]
 gi|304345852|gb|EFM11686.1| putative rRNA methylase [Paenibacillus curdlanolyticus YK9]
          Length = 196

 Score = 36.3 bits (83), Expect = 6.6,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 11/91 (12%)

Query: 34  PAPGKVILDATFGAGGYSRSFCKM-GSN--VIALDRDPFAVSCGQETMRDYKEQ-----F 85
            +PG  ++DAT G G  +R   ++ G    V A D    A+   +E +   +++      
Sbjct: 18  VSPGDAVIDATAGNGVDTRFLAELVGPRGAVYAFDIQEAALLATRERLAPLEDEGRLPAL 77

Query: 86  SLFQATFSQLQDYV---PDKGVDGVVFDLGV 113
            L   +  ++  +V       +  V+F+LG 
Sbjct: 78  QLVLDSHERMAAHVQPKHAGAIAAVMFNLGY 108


>gi|254385550|ref|ZP_05000876.1| methylase [Streptomyces sp. Mg1]
 gi|194344421|gb|EDX25387.1| methylase [Streptomyces sp. Mg1]
          Length = 257

 Score = 36.3 bits (83), Expect = 6.6,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 4/66 (6%)

Query: 24  LLEKVIALLNPAPGKVILD--ATFGAGGYSRS-FCKMGSNVIALDRDPFAVSCGQETMRD 80
           L  +  A L P  G V++D     GA G + +     G  + A D DP A++  +  +  
Sbjct: 77  LASEA-AALTPRAGAVVVDLCCGVGALGAAVADRVGGGVQLHAADIDPVALAYARRNVAP 135

Query: 81  YKEQFS 86
           Y  +  
Sbjct: 136 YGGRVH 141


>gi|153835710|ref|ZP_01988377.1| ribosomal protein L11 methyltransferase [Vibrio harveyi HY01]
 gi|148867643|gb|EDL66931.1| ribosomal protein L11 methyltransferase [Vibrio harveyi HY01]
          Length = 295

 Score = 36.3 bits (83), Expect = 6.6,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 21/102 (20%)

Query: 17  IGDH-VPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS------NVIALDRDPF 69
            G H    L  + +  L+   GK ++D  FG G        + +       VI +D DP 
Sbjct: 140 TGTHPTTALCLEWLEGLDL-SGKTVID--FGCG---SGILAIAAIKLGAEKVIGIDIDPQ 193

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDL 111
           A+   ++                 QL+ ++P    +G++ D+
Sbjct: 194 ALQASRDNAER--------NGVADQLEVFLPQNQPEGLIADV 227


>gi|332995096|gb|AEF05151.1| hypothetical protein ambt_18290 [Alteromonas sp. SN2]
          Length = 264

 Score = 36.3 bits (83), Expect = 6.6,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 31/78 (39%), Gaps = 7/78 (8%)

Query: 40  ILDATFGAGGYSRSFCKMGSNVIALDRDP-------FAVSCGQETMRDYKEQFSLFQATF 92
           ++DAT G G  +     +G  V  ++R P         +   Q+   +  E+ +L     
Sbjct: 108 VVDATPGLGRDAFVLVSVGCKVTMIERSPIVAALLEDGIRRLQQRFPELAERLALQHGNS 167

Query: 93  SQLQDYVPDKGVDGVVFD 110
           + +  Y   + VD +  D
Sbjct: 168 ADVMQYWNGENVDAIYLD 185


>gi|320593302|gb|EFX05711.1| RNA methylase family [Grosmannia clavigera kw1407]
          Length = 348

 Score = 36.3 bits (83), Expect = 6.6,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 5/69 (7%)

Query: 37  GKVILDATFGAGGYSRSFC--KMGSNVIALDRDPFAVSCGQETMRDY---KEQFSLFQAT 91
             +++D   G GG + +F   K    VI ++RD   ++C Q     +    +  +     
Sbjct: 84  DAILVDMFAGVGGNTIAFARSKRWGRVIGIERDAATLACAQNNAALFELADDAITWVHGD 143

Query: 92  FSQLQDYVP 100
              L D + 
Sbjct: 144 CFDLVDRLR 152


>gi|315221991|ref|ZP_07863902.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           anginosus F0211]
 gi|315188957|gb|EFU22661.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           anginosus F0211]
          Length = 452

 Score = 36.3 bits (83), Expect = 6.7,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 10/65 (15%)

Query: 23  VLLEKVIALLNPAPGKVILD-----ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77
           VL  + +  L+      ++D      T G      +F K   ++  +D  P A+   +  
Sbjct: 291 VLYNEAVKALDVDSEDCLIDAYCGVGTIGF-----AFAKKVKSLRGMDIIPEAIEDAKRN 345

Query: 78  MRDYK 82
            +   
Sbjct: 346 AKKMG 350


>gi|294626669|ref|ZP_06705266.1| biotin synthesis protein [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|294665860|ref|ZP_06731128.1| biotin synthesis protein [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292599089|gb|EFF43229.1| biotin synthesis protein [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292604370|gb|EFF47753.1| biotin synthesis protein [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 232

 Score = 36.3 bits (83), Expect = 6.7,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 9/104 (8%)

Query: 15  HTIGDHVPVLLEKVIALLNPAP----GKVILDATFGAGGYSRSFCKMGSN-VIALDRDPF 69
           +    H PV+L +  A+L   P    G+ +LDA  G+G Y     + G+  V  +D  P 
Sbjct: 20  YPPHAHNPVMLAEERAMLALMPSSLQGQHVLDAGCGSGRYMLHALRRGARQVTGVDLSPQ 79

Query: 70  AVSCGQETMRD--YKEQFSLFQATFSQ--LQDYVPDKGVDGVVF 109
            +      +       +  L Q +     L D V D  V G+V 
Sbjct: 80  MLHRAGAELARDWPAARIVLQQGSLDHLPLADTVTDLSVCGLVL 123


>gi|269792739|ref|YP_003317643.1| tRNA (adenine-N(1)-)-methyltransferase [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100374|gb|ACZ19361.1| tRNA (adenine-N(1)-)-methyltransferase [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 281

 Score = 36.3 bits (83), Expect = 6.7,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 32/89 (35%), Gaps = 8/89 (8%)

Query: 28  VIALLNPAPGKVILDATFGAGGYS---RSFCKMGSNVIALDRDPFAVSCGQETMRDYK-- 82
           V+  LN  PG  +++   G+GG +     F     +V   DR              +   
Sbjct: 87  VLMHLNIGPGSRVVECGTGSGGLTCVFAHFVGDEGHVYTYDRRQEFSELAMRNAERWGVA 146

Query: 83  EQFSLFQATFSQLQDYVPDKGVDGVVFDL 111
           ++ S        L +   ++ VD V  DL
Sbjct: 147 DRISF---KVRSLDEGFDERDVDAVFLDL 172


>gi|71902971|ref|YP_279774.1| SAM-dependent methyltransferase [Streptococcus pyogenes MGAS6180]
 gi|71802066|gb|AAX71419.1| SAM-dependent methyltransferase [Streptococcus pyogenes MGAS6180]
          Length = 193

 Score = 36.3 bits (83), Expect = 6.7,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 2/72 (2%)

Query: 43  ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQLQDYVPD 101
           AT G G  +    ++   V A D    A+    E +         L  A    +  YV +
Sbjct: 35  ATMGNGNDTAFLAQLAKKVYAFDVQEQAIRKTSERLAQLGLSNAELILAGHEAVDQYVTE 94

Query: 102 KGVDGVVFDLGV 113
             V   +F+LG 
Sbjct: 95  P-VRAAIFNLGY 105


>gi|281413201|ref|YP_003347280.1| Methyltransferase type 12 [Thermotoga naphthophila RKU-10]
 gi|281374304|gb|ADA67866.1| Methyltransferase type 12 [Thermotoga naphthophila RKU-10]
          Length = 254

 Score = 36.3 bits (83), Expect = 6.7,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 18/92 (19%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR-------- 79
           ++   +   GK +LD   G G ++    K G  V+ +D  P  ++  +E  +        
Sbjct: 31  ILENFHIR-GKKVLDVACGEGTFAVEIAKQGFEVVGVDLSPEMLNFARERAKEESVPVIF 89

Query: 80  --------DYKEQFSLFQATFSQLQDYVPDKG 103
                   D+ E+F +    F  L +Y+ +  
Sbjct: 90  LKKDMRELDFHEEFDIVTCWFDSL-NYLLEYK 120


>gi|254486849|ref|ZP_05100054.1| AMP-dependent synthetase and ligase [Roseobacter sp. GAI101]
 gi|214043718|gb|EEB84356.1| AMP-dependent synthetase and ligase [Roseobacter sp. GAI101]
          Length = 508

 Score = 36.3 bits (83), Expect = 6.7,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 35/101 (34%), Gaps = 2/101 (1%)

Query: 87  LFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASD 146
           +    FS   + +     D     L VSS   D   RG S ++   LD  M+ +  +A  
Sbjct: 92  IVPLPFSATPEALALMMADSNAELLFVSSAHADT-GRGLSVKQIVDLDRLMAWAADAAPA 150

Query: 147 VVNQANVKDLTRILGILGEEKQASRIAH-AIVKRRQSAPFQ 186
              Q N  DL  I+   G       I H    + RQ     
Sbjct: 151 GPAQVNPDDLFNIIYSSGTTGTPKGIIHDHRFRSRQLNRIT 191


>gi|261419206|ref|YP_003252888.1| short-chain dehydrogenase/reductase SDR [Geobacillus sp. Y412MC61]
 gi|319766022|ref|YP_004131523.1| short-chain dehydrogenase/reductase SDR [Geobacillus sp. Y412MC52]
 gi|261375663|gb|ACX78406.1| short-chain dehydrogenase/reductase SDR [Geobacillus sp. Y412MC61]
 gi|317110888|gb|ADU93380.1| short-chain dehydrogenase/reductase SDR [Geobacillus sp. Y412MC52]
          Length = 249

 Score = 36.3 bits (83), Expect = 7.0,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 59/186 (31%), Gaps = 40/186 (21%)

Query: 51  SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFD 110
           +R+F K G+NV+ +DRD                               +   G   +   
Sbjct: 22  ARAFAKQGANVVIIDRDIQ---------------------NGEAFAAQLQSDGFKAIFVA 60

Query: 111 LGVSSMQIDCGDRGFSFQKS-----GPLDMRMSCSGISASDVVNQANVKDLTRILGILGE 165
             V   ++D  +R   F +      G +D  ++ +G+S      +  V++   +L     
Sbjct: 61  ADV--RKVDDIER---FVQEAAGRFGRIDYLINNAGVSRWKSPYELTVEEWDDVLSTNLR 115

Query: 166 EKQASRIAHAIVKRRQSA-----PFQTTQDLSSLIQKTVYFSKNNR----IHPATRSFQA 216
               +    A   RR +         +T+ L S      Y +         H    SF  
Sbjct: 116 SAFFASREAAKYMRRNAKGGAIVNIASTRALMSEPNSEAYAASKGGLVALTHALAVSFAD 175

Query: 217 LRIFVN 222
            RI VN
Sbjct: 176 DRIRVN 181


>gi|332358268|gb|EGJ36096.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           SK355]
          Length = 463

 Score = 36.3 bits (83), Expect = 7.1,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 37/90 (41%), Gaps = 6/90 (6%)

Query: 23  VLLEKVIALLNPAPGKVILDATFGAG--GYSRSFCKMGSNVIALDRDPFAVSCGQETMRD 80
           VL  + +  L+      ++DA  G G  G   +F K   ++  +D  P A+   +   + 
Sbjct: 291 VLYGEAVKALDVTKEDHLIDAYCGGGTIG--FAFAKKVKSLRGMDIIPEAIEDAKRNAKR 348

Query: 81  YKEQFSLFQATFSQLQDYVPDKGVDGVVFD 110
                +L++A     ++ +P    +G   D
Sbjct: 349 MGFDNTLYEA--GTAEEIIPRWYAEGYRAD 376


>gi|326495170|dbj|BAJ85681.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326496350|dbj|BAJ94637.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 283

 Score = 36.3 bits (83), Expect = 7.1,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 3/77 (3%)

Query: 47  AGGYSRSFCKMGSNVIALDRDPFA--VSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV 104
           AGG + +  + G +  A  RD +       +  + +  E++ +++A   +L       GV
Sbjct: 25  AGGGTYALLQCGEDS-AYVRDAYGGYFEVFRALLAEDGERWRVYRAVRGELPSDEDAAGV 83

Query: 105 DGVVFDLGVSSMQIDCG 121
           DG V     S    D  
Sbjct: 84  DGFVISGSCSDAHGDEP 100


>gi|271963718|ref|YP_003337914.1| hypothetical protein Sros_2188 [Streptosporangium roseum DSM 43021]
 gi|270506893|gb|ACZ85171.1| hypothetical protein Sros_2188 [Streptosporangium roseum DSM 43021]
          Length = 411

 Score = 36.3 bits (83), Expect = 7.1,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 9/72 (12%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSR---SFCKMGSNVIALDRD-PFAVSCGQETMRD 80
           L  ++A   P PG+ +LD     GG++R   + C+    + A   D P A+  G+  +  
Sbjct: 158 LAPLVAATAPDPGRRLLDV---GGGHARYSIALCEAHPELTATIVDLPKALEGGRARVEQ 214

Query: 81  YK--EQFSLFQA 90
                +      
Sbjct: 215 AGLAGRVRTVAG 226


>gi|260887305|ref|ZP_05898568.1| putative protein-L-IsoD(D-D) O-methyltransferase [Selenomonas
           sputigena ATCC 35185]
 gi|330838941|ref|YP_004413521.1| protein of unknown function DUF548 [Selenomonas sputigena ATCC
           35185]
 gi|260862941|gb|EEX77441.1| putative protein-L-IsoD(D-D) O-methyltransferase [Selenomonas
           sputigena ATCC 35185]
 gi|329746705|gb|AEC00062.1| protein of unknown function DUF548 [Selenomonas sputigena ATCC
           35185]
          Length = 263

 Score = 36.3 bits (83), Expect = 7.1,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 33/98 (33%), Gaps = 13/98 (13%)

Query: 26  EKVIALLNPAPGKVILDATFGAGGYS---RSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82
           + ++  +    G  +LD T G G  S            V AL++ P      +  +  + 
Sbjct: 91  DHMVEAMGIGEGDTVLDCTLGLGADSITASFIAGERGKVTALEKSPLIYEIVRHGLAHFS 150

Query: 83  E----------QFSLFQATFSQLQDYVPDKGVDGVVFD 110
                      +  + +A +      +PD   D V FD
Sbjct: 151 AGNYDLHAAMRRVEVRRADYEDFLRTLPDDSYDVVYFD 188


>gi|157961009|ref|YP_001501043.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella pealeana
           ATCC 700345]
 gi|226725390|sp|A8H1S1|RUMA_SHEPA RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|157846009|gb|ABV86508.1| RNA methyltransferase, TrmA family [Shewanella pealeana ATCC
           700345]
          Length = 445

 Score = 36.3 bits (83), Expect = 7.2,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 40/94 (42%), Gaps = 5/94 (5%)

Query: 22  PV---LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETM 78
           PV   ++ + +  L+P  G+ +LD   G G +S    K G+ VI ++     V   +   
Sbjct: 282 PVNQAMVSQAVEWLSPKAGERVLDLFCGIGNFSLPLAKDGAEVIGVEGVVAMVEQARVNA 341

Query: 79  RDYK-EQFSLFQATFS-QLQDYVPDKGVDGVVFD 110
           +    ++ + + A  S  L        VD ++ D
Sbjct: 342 KQSGLDKVAFYHADLSADLSKEPWLGKVDKMLID 375


>gi|297561816|ref|YP_003680790.1| RNA methyltransferase, TrmA family [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296846264|gb|ADH68284.1| RNA methyltransferase, TrmA family [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 428

 Score = 36.3 bits (83), Expect = 7.2,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 4/91 (4%)

Query: 23  VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMR 79
           VL   V+  L P PG+  LD   GAG ++ +           + ++    AV   +  ++
Sbjct: 260 VLTAAVLDALEPKPGETALDLYCGAGLFTGALAAAVGPEGRAMGVESGAEAVRDARYNLK 319

Query: 80  DYKEQFSLFQATFSQLQDYVPDKGVDGVVFD 110
           D  EQ  + Q   +       D   D VV D
Sbjct: 320 DM-EQVRVEQGDVAAQLREWADVRADVVVLD 349


>gi|167771334|ref|ZP_02443387.1| hypothetical protein ANACOL_02700 [Anaerotruncus colihominis DSM
           17241]
 gi|167665974|gb|EDS10104.1| hypothetical protein ANACOL_02700 [Anaerotruncus colihominis DSM
           17241]
          Length = 406

 Score = 36.3 bits (83), Expect = 7.3,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 38/131 (29%), Gaps = 27/131 (20%)

Query: 62  IALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQDYVPDKGVDGVVFD--------- 110
            A D DP AV   +E         +  + QA  +     +P+ G  G+V           
Sbjct: 278 FASDIDPEAVRLTRENAAKAGVAGRIHVVQADVADFAPQLPE-GRSGIVLANPPYGERML 336

Query: 111 -----------LGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRI 159
                      LG S  + D    GFS+    P D      G  A+      N     ++
Sbjct: 337 GEQEAQALSRTLGASFPKRD----GFSYYIISPDDGFEDLFGRPAARRRKLYNGMIKCQV 392

Query: 160 LGILGEEKQAS 170
                +     
Sbjct: 393 YMYFDKPVHFK 403


>gi|225562401|gb|EEH10680.1| S-adenosylmethionine (SAM)-dependent methyltransferase [Ajellomyces
           capsulatus G186AR]
          Length = 278

 Score = 36.3 bits (83), Expect = 7.4,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 42/99 (42%)

Query: 10  SSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPF 69
           S+  +      VP L  KV+  LNP P   +LD   G G ++ SF     +V+ +D  P 
Sbjct: 15  SAEAYQESAAFVPKLAHKVLQYLNPQPTDRVLDVGCGDGKFTSSFIPHIKSVLGVDASPS 74

Query: 70  AVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVV 108
            +S  ++     K  F +    +   +  + +   D VV
Sbjct: 75  MISSAKQHYGIPKADFRVVDCRYLDREQDILNGAWDKVV 113


>gi|15887638|ref|NP_353319.1| Sun protein [Agrobacterium tumefaciens str. C58]
 gi|15155185|gb|AAK86104.1| Sun protein [Agrobacterium tumefaciens str. C58]
          Length = 429

 Score = 36.3 bits (83), Expect = 7.4,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 5/79 (6%)

Query: 35  APGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91
             G+ +LD   G GG + +          V A D D   ++   E ++    +       
Sbjct: 230 REGEQVLDYCAGGGGKTLAMAASMNNKGQVHAFDADRKRLAPIIERLKRAGTRNVQVHDR 289

Query: 92  FSQLQDYVPDKGVDGVVFD 110
            + L  +   +  D V+ D
Sbjct: 290 AAGLAPF--QEKFDRVLVD 306


>gi|99081832|ref|YP_613986.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Ruegeria
           sp. TM1040]
 gi|99038112|gb|ABF64724.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Ruegeria
           sp. TM1040]
          Length = 217

 Score = 36.3 bits (83), Expect = 7.4,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 41/106 (38%), Gaps = 9/106 (8%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84
           L K++  L+    +++LD   G G  +    ++   VI ++ D    S  QE +      
Sbjct: 67  LAKMLDALDVRQDELVLDVACGFGYSTAVVARLAQMVIGVEEDESLASEAQEILSASNAD 126

Query: 85  FSLFQATFSQLQDYVPDKG-VDGVVFDLGV------SSMQIDCGDR 123
            ++       L +   + G  D ++ + GV         Q+  G R
Sbjct: 127 NAIVHQ--GDLAEGAAEHGPYDVIMIEGGVEEVPEALLAQLKDGGR 170


>gi|238501564|ref|XP_002382016.1| RNA methylase family protein, putative [Aspergillus flavus
           NRRL3357]
 gi|220692253|gb|EED48600.1| RNA methylase family protein, putative [Aspergillus flavus
           NRRL3357]
          Length = 252

 Score = 36.3 bits (83), Expect = 7.4,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 51/118 (43%), Gaps = 20/118 (16%)

Query: 11  SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDP 68
             + + I +H+        A   PA   V++DA  GAGG + +F + G    V A++++P
Sbjct: 70  EPVANKIAEHI--------ASAAPASRMVLVDAFAGAGGNTIAFARSGRWKRVYAIEKNP 121

Query: 69  FAVSCGQETMRDYK--EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRG 124
             + C +   + Y   ++ + F+    Q+        V+  + DLG  S+       G
Sbjct: 122 AVLQCAKHNAKIYGVEDKITWFEGDSLQI--------VNNQLKDLGPYSVLFASPPWG 171


>gi|169769126|ref|XP_001819033.1| RNA methylase family protein [Aspergillus oryzae RIB40]
 gi|83766891|dbj|BAE57031.1| unnamed protein product [Aspergillus oryzae]
          Length = 240

 Score = 36.3 bits (83), Expect = 7.4,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 51/118 (43%), Gaps = 20/118 (16%)

Query: 11  SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDP 68
             + + I +H+        A   PA   V++DA  GAGG + +F + G    V A++++P
Sbjct: 58  EPVANKIAEHI--------ASAAPASRMVLVDAFAGAGGNTIAFARSGRWKRVYAIEKNP 109

Query: 69  FAVSCGQETMRDYK--EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRG 124
             + C +   + Y   ++ + F+    Q+        V+  + DLG  S+       G
Sbjct: 110 AVLQCAKHNAKIYGVEDKITWFEGDSLQI--------VNNQLKDLGPYSVLFASPPWG 159


>gi|161524353|ref|YP_001579365.1| type 11 methyltransferase [Burkholderia multivorans ATCC 17616]
 gi|189350893|ref|YP_001946521.1| SAM-dependent methyltransferase [Burkholderia multivorans ATCC
          17616]
 gi|160341782|gb|ABX14868.1| Methyltransferase type 11 [Burkholderia multivorans ATCC 17616]
 gi|189334915|dbj|BAG43985.1| SAM-dependent methyltransferase [Burkholderia multivorans ATCC
          17616]
          Length = 200

 Score = 36.3 bits (83), Expect = 7.6,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 21/40 (52%)

Query: 34 PAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSC 73
                +LD   G G ++R F   G  V+ALDRDP A++ 
Sbjct: 29 VRAHGAVLDVAAGGGRHARWFASRGHPVVALDRDPAALAA 68


>gi|118593792|ref|ZP_01551159.1| Methyltransferase type 11 [Stappia aggregata IAM 12614]
 gi|118433637|gb|EAV40301.1| Methyltransferase type 11 [Stappia aggregata IAM 12614]
          Length = 255

 Score = 36.3 bits (83), Expect = 7.6,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 4/87 (4%)

Query: 28  VIALLNPAPGKVILD-ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFS 86
            +  L P PG+ ILD  T G G  +R     G++V  +D  P  +   +        +  
Sbjct: 23  TVQALWPRPGERILDIGT-GTGWAARLAAWRGASVTGVDISPRMLEAAEALSAGLDPRPV 81

Query: 87  LFQATFSQLQDYVPDKGVDGVVFDLGV 113
             QA    L     D+  DGV+   GV
Sbjct: 82  FQQAAAEALP--FGDESFDGVISTYGV 106


>gi|227824162|ref|YP_002828135.1| Fmu (Sun) domain protein [Sinorhizobium fredii NGR234]
 gi|227343164|gb|ACP27382.1| Fmu (Sun) domain protein [Sinorhizobium fredii NGR234]
          Length = 429

 Score = 36.3 bits (83), Expect = 7.7,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 30/86 (34%), Gaps = 5/86 (5%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSF---CKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84
           V  L+ P  G+ +LD   G GG + +          V A D D   ++   E ++    +
Sbjct: 223 VADLVFPREGEQVLDYCAGGGGKTLAMSAAMNNKGQVHAYDTDRKRLAPIIERLKRAGTR 282

Query: 85  FSLFQATFSQLQDYVPDKGVDGVVFD 110
                 +   L         D V+ D
Sbjct: 283 NVQVHESAEALASLAGRC--DRVLVD 306


>gi|332976547|gb|EGK13388.1| type 12 methyltransferase [Desmospora sp. 8437]
          Length = 249

 Score = 35.9 bits (82), Expect = 7.9,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 4/59 (6%)

Query: 45  FGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD 101
            G G  S           VIALD  P  +   +  +  + ++       F  L ++ PD
Sbjct: 54  VGGGWLSEVILDHFPRAEVIALDGSPSMIEATRGRLARFSDRLRF--QRFDLLDEHWPD 110


>gi|289644701|ref|ZP_06476762.1| Methyltransferase type 11 [Frankia symbiont of Datisca glomerata]
 gi|289505490|gb|EFD26528.1| Methyltransferase type 11 [Frankia symbiont of Datisca glomerata]
          Length = 250

 Score = 35.9 bits (82), Expect = 7.9,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 35/95 (36%), Gaps = 6/95 (6%)

Query: 27  KVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQ 84
           + ++ L  A G+ +LD   G G  + +      +  VIA+D     +   Q  +    ++
Sbjct: 23  RTLSRLALAGGETVLDVGCGTGRDTAALLDRLPHGRVIAVDGSAAMLDQLQARLAGRTDR 82

Query: 85  FSLFQATFSQLQDYVPDKGVDG-VVFDLGVSSMQI 118
             +     + L   +   G  G V     V++   
Sbjct: 83  LEIVH---ADLTRPLRLPGPAGLVDAVFSVAAFHW 114


>gi|281357060|ref|ZP_06243550.1| translation initiation factor IF-3 [Victivallis vadensis ATCC
           BAA-548]
 gi|281316618|gb|EFB00642.1| translation initiation factor IF-3 [Victivallis vadensis ATCC
           BAA-548]
          Length = 167

 Score = 35.9 bits (82), Expect = 7.9,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 41/115 (35%), Gaps = 2/115 (1%)

Query: 135 MRMSCSGISASDVVNQANVKDLTRILGILG--EEKQASRIAHAIVKRRQSAPFQTTQDLS 192
           M+ +    +A +V       +   ++      E  Q   +   +V  R + P     +  
Sbjct: 1   MKPNDRTFTAPEVRLIGPEGEQLDVVSYARAREMAQDYGMDLVLVSDRATPPVVRIMNFG 60

Query: 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247
            L  +     K  R + A +  + ++  VN +  +    L+ A   L+ G  L V
Sbjct: 61  KLQYEQKKNLKAQRKNQAAQKLKEVKFHVNIDDHDYETKLKHALDFLEKGCRLKV 115


>gi|253575649|ref|ZP_04852985.1| SAM binding domain-containing protein [Paenibacillus sp. oral taxon
           786 str. D14]
 gi|251844987|gb|EES72999.1| SAM binding domain-containing protein [Paenibacillus sp. oral taxon
           786 str. D14]
          Length = 254

 Score = 35.9 bits (82), Expect = 7.9,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 2/72 (2%)

Query: 25  LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84
           ++++I  L+  PG  +LD   G G +S +  + G  V  +D     +      +     +
Sbjct: 39  VQRMIRWLHLPPGAKVLDLCCGMGRHSLALAEAGYKVTGVDL-SEVLLREARRLDPEG-R 96

Query: 85  FSLFQATFSQLQ 96
            +  +A   +L 
Sbjct: 97  ITWHRADMRELP 108


>gi|124023403|ref|YP_001017710.1| glycine-sarcosine methyltransferase [Prochlorococcus marinus str.
           MIT 9303]
 gi|123963689|gb|ABM78445.1| probable glycine-sarcosine methyltransferase [Prochlorococcus
           marinus str. MIT 9303]
          Length = 283

 Score = 35.9 bits (82), Expect = 7.9,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 3/85 (3%)

Query: 40  ILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYV 99
           +LD   G G +S S  K G +VI+ D  P  ++   +  RD+ +     QA +  L   +
Sbjct: 72  VLDVATGTGFHSVSLLKEGFDVISADGSPNMLARAFQNARDHGQLLRTAQADWRYLNRDI 131

Query: 100 PDKGVDGVVFDLGVS-SMQIDCGDR 123
             +  D V+  LG S +      DR
Sbjct: 132 HGE-FDAVIC-LGNSFTHLFREHDR 154


>gi|90407141|ref|ZP_01215329.1| ribosomal protein L11 methyltransferase [Psychromonas sp. CNPT3]
 gi|90311717|gb|EAS39814.1| ribosomal protein L11 methyltransferase [Psychromonas sp. CNPT3]
          Length = 230

 Score = 35.9 bits (82), Expect = 7.9,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 15/91 (16%)

Query: 28  VIALLNPAP--GKVILDATFGAGGYSRSF--CKMGS-NVIALDRDPFAVSCGQETMRDYK 82
            +  L       KVI+D  FG G    +    K+G+  VI +D DP A++  ++      
Sbjct: 83  CLTWLEGQDLRDKVIID--FGCGSGILAIAALKLGAKRVIGIDIDPQAITASRDNATR-- 138

Query: 83  EQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113
                      QL+ Y+ D   +G+  D+ V
Sbjct: 139 ------NGVSDQLELYLADDLPNGIQADVLV 163


>gi|332799053|ref|YP_004460552.1| 50S ribosomal protein L11 methyltransferase [Tepidanaerobacter sp.
           Re1]
 gi|332696788|gb|AEE91245.1| Ribosomal protein L11 methyltransferase [Tepidanaerobacter sp. Re1]
          Length = 314

 Score = 35.9 bits (82), Expect = 8.0,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 44/100 (44%), Gaps = 7/100 (7%)

Query: 17  IGDHVPVLLEKVIALLN--PAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSC 73
            G H   +L   + +L         ++D   G+G  S +  K+G+  V+A+DRD  AV  
Sbjct: 154 TGTHETTML--CLEILEKYIKKDITVIDVGCGSGILSIASGKLGAKQVLAIDRDENAVRI 211

Query: 74  GQETMR--DYKEQFSLFQATFSQLQDYVPDKGVDGVVFDL 111
            +E ++  + +      +    Q  ++  D  V  ++ D+
Sbjct: 212 ARENIKRNNLETCVRAVKGDKLQNINFKADIIVANIIADV 251


>gi|295133869|ref|YP_003584545.1| ribosomal RNA small subunit methyltransferase B [Zunongwangia
           profunda SM-A87]
 gi|294981884|gb|ADF52349.1| ribosomal RNA small subunit methyltransferase B [Zunongwangia
           profunda SM-A87]
          Length = 411

 Score = 35.9 bits (82), Expect = 8.0,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 3/41 (7%)

Query: 28  VIALLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALD 65
           V   L+  PG  ++D   GAGG   +  +  +    VIALD
Sbjct: 216 VADFLDVKPGDRVVDTCAGAGGKSLHLAALMENKGQVIALD 256


>gi|161520820|ref|YP_001584247.1| methyltransferase type 11 [Burkholderia multivorans ATCC 17616]
 gi|189352998|ref|YP_001948625.1| methylase [Burkholderia multivorans ATCC 17616]
 gi|160344870|gb|ABX17955.1| Methyltransferase type 11 [Burkholderia multivorans ATCC 17616]
 gi|189337020|dbj|BAG46089.1| methylase [Burkholderia multivorans ATCC 17616]
          Length = 243

 Score = 35.9 bits (82), Expect = 8.0,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 2/81 (2%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSL 87
            +ALL    G  +LDA  G G  S    + G+ V A D  P  V+  +           +
Sbjct: 38  TLALLGDVAGLTVLDAGCGPGICSELLARRGATVHAFDVTPEMVALARARCAGLA--VDI 95

Query: 88  FQATFSQLQDYVPDKGVDGVV 108
            Q   +   D++PD   D V+
Sbjct: 96  AQGDLAAPLDWLPDASFDKVL 116


>gi|118346215|ref|XP_977054.1| hypothetical protein TTHERM_00035540 [Tetrahymena thermophila]
 gi|89288353|gb|EAR86341.1| hypothetical protein TTHERM_00035540 [Tetrahymena thermophila
           SB210]
          Length = 1006

 Score = 35.9 bits (82), Expect = 8.0,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 6/103 (5%)

Query: 26  EKVIALLNPA-PGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQ 84
           E +   L+     ++++DA  G G  +  F K  S VIA+D +   VS  +  +  +K+Q
Sbjct: 367 EPICQYLSSRLKNQIVVDAFCGVGYNTVQFAKEASQVIAIDCNQVKVSHAKYNIESFKQQ 426

Query: 85  --FSLFQATFSQLQDYVPDKGV---DGVVFDLGVSSMQIDCGD 122
               + Q+ F Q++    D  V   D   FD  +SS Q     
Sbjct: 427 HKVEVIQSDFLQMKKLKADTVVLHPDYKKFDNSISSSQGIDNS 469


>gi|254247810|ref|ZP_04941131.1| conserved hypothetical protein [Burkholderia cenocepacia PC184]
 gi|124872586|gb|EAY64302.1| conserved hypothetical protein [Burkholderia cenocepacia PC184]
          Length = 200

 Score = 35.9 bits (82), Expect = 8.1,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 32 LNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSC 73
          L PA G  +LD   G G ++  F   G  V+ALDRDP A++ 
Sbjct: 28 LVPA-GGAVLDVAAGGGRHAGWFASRGHPVVALDRDPAALAA 68


>gi|107028724|ref|YP_625819.1| methyltransferase type 12 [Burkholderia cenocepacia AU 1054]
 gi|116690117|ref|YP_835740.1| methyltransferase type 12 [Burkholderia cenocepacia HI2424]
 gi|105897888|gb|ABF80846.1| Methyltransferase type 12 [Burkholderia cenocepacia AU 1054]
 gi|116648206|gb|ABK08847.1| Methyltransferase type 12 [Burkholderia cenocepacia HI2424]
          Length = 200

 Score = 35.9 bits (82), Expect = 8.2,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 32 LNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSC 73
          L PA G  +LD   G G ++  F   G  V+ALDRDP A++ 
Sbjct: 28 LVPA-GGAVLDVAAGGGRHAGWFASRGHPVVALDRDPAALAA 68


>gi|332158532|ref|YP_004423811.1| hypothetical protein PNA2_0891 [Pyrococcus sp. NA2]
 gi|331033995|gb|AEC51807.1| hypothetical protein PNA2_0891 [Pyrococcus sp. NA2]
          Length = 396

 Score = 35.9 bits (82), Expect = 8.3,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 34/84 (40%), Gaps = 9/84 (10%)

Query: 34  PAPGKVILDA---TFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET--MRDYKEQFSLF 88
             PG  +LD    T G   ++ +       VI +D+ P A+   +E   +   +++ +  
Sbjct: 215 VRPGDRVLDVFTYTGGFAIHA-AIAGA-EEVIGIDKSPKAIETAKENAKLNGVEDRVNFM 272

Query: 89  QATFSQLQDYVPDKG--VDGVVFD 110
                +  + +  +G   D V+ D
Sbjct: 273 VGNAFEEMEKLQKRGEKFDIVILD 296


>gi|83748247|ref|ZP_00945273.1| Hypothetical Protein RRSL_01934 [Ralstonia solanacearum UW551]
 gi|207722880|ref|YP_002253314.1| conserved hypothetical protein [Ralstonia solanacearum MolK2]
 gi|207743515|ref|YP_002259907.1| hypothetical protein RSIPO_01694 [Ralstonia solanacearum IPO1609]
 gi|83725088|gb|EAP72240.1| Hypothetical Protein RRSL_01934 [Ralstonia solanacearum UW551]
 gi|206588064|emb|CAQ18644.1| conserved hypothetical protein [Ralstonia solanacearum MolK2]
 gi|206594913|emb|CAQ61840.1| conserved hypothetical protein [Ralstonia solanacearum IPO1609]
          Length = 188

 Score = 35.9 bits (82), Expect = 8.3,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 28 VIALLNPAPGK-VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVS 72
          V+    P P    +LD   G G ++R     G  V  LDRD  A++
Sbjct: 18 VVRWAAPLPAGARVLDIACGRGRHARWLAARGLRVTGLDRDADALA 63


>gi|296130427|ref|YP_003637677.1| hypothetical protein Cfla_2590 [Cellulomonas flavigena DSM 20109]
 gi|296022242|gb|ADG75478.1| conserved hypothetical protein [Cellulomonas flavigena DSM 20109]
          Length = 400

 Score = 35.9 bits (82), Expect = 8.3,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 3/69 (4%)

Query: 42  DATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD 101
           D T G G  + +   +G  V+A D D    +     +R + E   +       L   +  
Sbjct: 103 DLTCGLGADALAMAGVGLRVLATDVDETTAALATVNLRAFPE-VEVRMGDGLALD--LAG 159

Query: 102 KGVDGVVFD 110
           +GVDGV  D
Sbjct: 160 EGVDGVYAD 168


>gi|145590568|ref|YP_001152570.1| methyltransferase type 11 [Pyrobaculum arsenaticum DSM 13514]
 gi|145282336|gb|ABP49918.1| Methyltransferase type 11 [Pyrobaculum arsenaticum DSM 13514]
          Length = 165

 Score = 35.9 bits (82), Expect = 8.3,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 7/78 (8%)

Query: 24 LLEKVIALLNPAP-GKVILDATFGAG-GYS-RSFCKMGSNVIALDRDPFAVSCGQETMRD 80
          +L++V A L+    G+ ++D   GAG GYS R     G  V A+D DP  +S       +
Sbjct: 1  MLDEVFADLDSLDLGQSVVD--IGAGFGYSTRYLLSRGLRVCAVDVDPGVLSSLGAAFGE 58

Query: 81 YKEQ--FSLFQATFSQLQ 96
          + +     L+ A    L 
Sbjct: 59 FVKVGLLKLYHAPAEHLP 76


>gi|169848697|ref|XP_001831053.1| Tgs1 protein [Coprinopsis cinerea okayama7#130]
 gi|116507780|gb|EAU90675.1| Tgs1 protein [Coprinopsis cinerea okayama7#130]
          Length = 309

 Score = 35.9 bits (82), Expect = 8.3,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96
            ILDA  G GG + +F +  + VIALD  P  ++  +     Y   ++     A +    
Sbjct: 118 TILDAFCGVGGNAIAFAQTCNRVIALDTSPVRLALARHNAEIYGVADRIEFILADYISFA 177

Query: 97  DYVP 100
           + + 
Sbjct: 178 NTLA 181


>gi|194764547|ref|XP_001964390.1| GF23076 [Drosophila ananassae]
 gi|190614662|gb|EDV30186.1| GF23076 [Drosophila ananassae]
          Length = 218

 Score = 35.9 bits (82), Expect = 8.5,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 39  VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQ 96
           +I+DA  G GG +  F      VIA+D D   +S  +     Y    +     A F Q  
Sbjct: 58  LIVDAFCGCGGNAIQFANTCGRVIAIDIDAEKLSMAKHNACIYGVSHKIEFIHADFLQFA 117


>gi|332185231|ref|ZP_08386980.1| dimethyladenosine transferase [Sphingomonas sp. S17]
 gi|332014955|gb|EGI57011.1| dimethyladenosine transferase [Sphingomonas sp. S17]
          Length = 274

 Score = 35.9 bits (82), Expect = 8.6,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 19/45 (42%)

Query: 46  GAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQA 90
           G GG +R+    G  V A++RD   +    E    +  +  + + 
Sbjct: 57  GPGGLTRALLMAGGRVTAIERDRRCIPALAELSEAFPGRLRVIEG 101


>gi|154246746|ref|YP_001417704.1| short-chain dehydrogenase/reductase SDR [Xanthobacter
          autotrophicus Py2]
 gi|154160831|gb|ABS68047.1| short-chain dehydrogenase/reductase SDR [Xanthobacter
          autotrophicus Py2]
          Length = 253

 Score = 35.9 bits (82), Expect = 8.6,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 16/36 (44%)

Query: 52 RSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSL 87
           +    G  V+A DRD  AV   +  +  + E+  +
Sbjct: 22 EALLAEGWRVVAADRDVQAVEKARAQLAGHGERVRV 57


>gi|53803775|ref|YP_114333.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Methylococcus
           capsulatus str. Bath]
 gi|90126220|sp|Q606W5|RUMA_METCA RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|53757536|gb|AAU91827.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Methylococcus
           capsulatus str. Bath]
          Length = 443

 Score = 35.9 bits (82), Expect = 8.6,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 27/59 (45%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82
           ++++V+  L+P P + +LD   G G ++    +   +V  ++    AV+       D  
Sbjct: 285 MIDQVMQALDPQPEERVLDLFCGLGNFTLPLARRAGHVTGVEGGAEAVARAIRNAADNG 343


>gi|320159374|ref|YP_004191752.1| tRNA and rRNA cytosine-C5-methylase [Vibrio vulnificus MO6-24/O]
 gi|319934686|gb|ADV89549.1| tRNA and rRNA cytosine-C5-methylase [Vibrio vulnificus MO6-24/O]
          Length = 404

 Score = 35.9 bits (82), Expect = 9.0,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 28  VIALLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82
           V A L+  PG  ++DA  GAGG   +  +       ++A+D + + ++  +E  R   
Sbjct: 217 VAAALDVKPGMRVIDACAGAGGKTLHLAAMMAGKGRLLAMDVEEWKLNNLKERARRAG 274


>gi|307944937|ref|ZP_07660274.1| methyltransferase type 11 [Roseibium sp. TrichSKD4]
 gi|307771861|gb|EFO31085.1| methyltransferase type 11 [Roseibium sp. TrichSKD4]
          Length = 336

 Score = 35.9 bits (82), Expect = 9.0,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 43/104 (41%), Gaps = 28/104 (26%)

Query: 225 IEELAQGLRSAEKALKAGGLLIVVSF--HSLE---------------DRLVKKFFASRSG 267
           +++  + L  A +AL+ GG L+V+ F  H+LE               D + +++  +   
Sbjct: 234 LDDPQRALSEAARALRPGGRLLVIDFAPHTLEFLRDAHAHRRLGIARDHM-ERWLETLDL 292

Query: 268 KVMAVRHMIPSNAHPAVF----------QSITKKVVVPTQEDVA 301
            + AV  + P                  + +T   V P++++VA
Sbjct: 293 DLEAVSDLEPQTDSGTQLTVTLWLARDRRIVTDLPVTPSRQEVA 336


>gi|241765841|ref|ZP_04763778.1| SurA domain protein [Acidovorax delafieldii 2AN]
 gi|241364240|gb|EER59412.1| SurA domain protein [Acidovorax delafieldii 2AN]
          Length = 466

 Score = 35.9 bits (82), Expect = 9.1,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 9/74 (12%)

Query: 50  YSRSFC-KMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVV 108
           ++R    + G  +          S     + DY+ +    QA F++L       G     
Sbjct: 323 HARHILLRTGPQLT--------ESAAAARLADYRRRVLAGQADFAELAREHSQDGSAKQG 374

Query: 109 FDLGVSSMQIDCGD 122
            DLG S+      +
Sbjct: 375 GDLGWSNPGRYVPE 388


>gi|224539112|ref|ZP_03679651.1| hypothetical protein BACCELL_04014 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519276|gb|EEF88381.1| hypothetical protein BACCELL_04014 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 243

 Score = 35.9 bits (82), Expect = 9.1,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 4/89 (4%)

Query: 24  LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83
           LLE+    L  A GK+ LD   G+G +S +  + G +V A+D  P +V   Q+    +  
Sbjct: 55  LLERT--ALQLATGKI-LDVGAGSGCHSLALQEAGKDVHAIDISPLSVEVMQQRGVRHAT 111

Query: 84  QFSLFQATFSQ-LQDYVPDKGVDGVVFDL 111
             +LF   F +     +      G++  L
Sbjct: 112 LLNLFDEHFQETYDTILMLMNGSGIIGKL 140


>gi|254467076|ref|ZP_05080487.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Rhodobacterales bacterium Y4I]
 gi|206687984|gb|EDZ48466.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Rhodobacterales bacterium Y4I]
          Length = 217

 Score = 35.9 bits (82), Expect = 9.1,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 42/115 (36%), Gaps = 18/115 (15%)

Query: 23  VLLEK-----VIALLNPAPGKVILDATFGAG-GYSRSFCKMGSN-VIALDRDPFAVSCGQ 75
           VLLE      ++  L+    +++LD   G G GYS +     +  VI ++ D       Q
Sbjct: 60  VLLEPRTLAKMLDALDIQNDELVLD--VGCGLGYSTAVAARVAQMVIGVEEDEDLAEDAQ 117

Query: 76  ETMRDYKEQFSLFQATFSQLQDYVPDKG-VDGVVFDLG------VSSMQIDCGDR 123
             + +     ++       L +   + G  D ++   G          Q+  G R
Sbjct: 118 ALLSETGADNAIVHT--GPLAEGAAEHGPYDVILVQGGAEELPAPLLAQLKDGGR 170


>gi|189349594|ref|YP_001945222.1| hypothetical protein BMULJ_00723 [Burkholderia multivorans ATCC
          17616]
 gi|189333616|dbj|BAG42686.1| hypothetical protein BMULJ_00723 [Burkholderia multivorans ATCC
          17616]
          Length = 356

 Score = 35.9 bits (82), Expect = 9.1,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 17/52 (32%), Gaps = 3/52 (5%)

Query: 38 KVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSL 87
            ++D   G  GYS          +    D D  A+    E       QF++
Sbjct: 28 GHVVDCACGI-GYSSEVLAAAGVQSYQGFDIDEQAIQHAIERFATDGRQFAV 78


>gi|298480499|ref|ZP_06998696.1| methyltransferase, FkbM family [Bacteroides sp. D22]
 gi|298273320|gb|EFI14884.1| methyltransferase, FkbM family [Bacteroides sp. D22]
          Length = 270

 Score = 35.9 bits (82), Expect = 9.3,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 25/55 (45%), Gaps = 4/55 (7%)

Query: 37  GKVILDATFGAG-GYSR-SFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQ 89
           GKV +D   G   GYS     +   +V   ++D   +   + T   ++++ ++ Q
Sbjct: 117 GKVFVD--VGCAEGYSSLEIIEEAKHVYLFEQDEQWLEAIRATFEPWQDKVTIVQ 169


>gi|293368891|ref|ZP_06615494.1| methyltransferase, FkbM family [Bacteroides ovatus SD CMC 3f]
 gi|292636040|gb|EFF54529.1| methyltransferase, FkbM family [Bacteroides ovatus SD CMC 3f]
          Length = 250

 Score = 35.9 bits (82), Expect = 9.3,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 25/55 (45%), Gaps = 4/55 (7%)

Query: 37  GKVILDATFGAG-GYSR-SFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQ 89
           GKV +D   G   GYS     +   +V   ++D   +   + T   ++++ ++ Q
Sbjct: 97  GKVFVD--VGCAEGYSSLEIIEEAKHVYLFEQDEQWLEAIRATFEPWQDKVTIVQ 149


>gi|237716729|ref|ZP_04547210.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262405505|ref|ZP_06082055.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294646355|ref|ZP_06724002.1| methyltransferase, FkbM family [Bacteroides ovatus SD CC 2a]
 gi|294806691|ref|ZP_06765522.1| methyltransferase, FkbM family [Bacteroides xylanisolvens SD CC 1b]
 gi|229442712|gb|EEO48503.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262356380|gb|EEZ05470.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292638310|gb|EFF56681.1| methyltransferase, FkbM family [Bacteroides ovatus SD CC 2a]
 gi|294446111|gb|EFG14747.1| methyltransferase, FkbM family [Bacteroides xylanisolvens SD CC 1b]
          Length = 270

 Score = 35.9 bits (82), Expect = 9.3,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 25/55 (45%), Gaps = 4/55 (7%)

Query: 37  GKVILDATFGAG-GYSR-SFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQ 89
           GKV +D   G   GYS     +   +V   ++D   +   + T   ++++ ++ Q
Sbjct: 117 GKVFVD--VGCAEGYSSLEIIEEAKHVYLFEQDEQWLEAIRATFEPWQDKVTIVQ 169


>gi|218666805|ref|YP_002424535.1| sun protein [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218519018|gb|ACK79604.1| sun protein [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 434

 Score = 35.9 bits (82), Expect = 9.3,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 1/80 (1%)

Query: 32  LNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSLFQA 90
           L P  G+ ILDA    GG +     +G+  + ALDR    ++  +ET+     +  L  A
Sbjct: 249 LAPREGERILDACAAPGGKTAHLWALGATRLDALDRSAERLNRVRETLERQGGEVHLQAA 308

Query: 91  TFSQLQDYVPDKGVDGVVFD 110
             ++   +   +  D ++ D
Sbjct: 309 DAAETATWWNGETYDAILLD 328


>gi|198282170|ref|YP_002218491.1| sun protein [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|198246691|gb|ACH82284.1| sun protein [Acidithiobacillus ferrooxidans ATCC 53993]
          Length = 431

 Score = 35.9 bits (82), Expect = 9.3,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 1/80 (1%)

Query: 32  LNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSLFQA 90
           L P  G+ ILDA    GG +     +G+  + ALDR    ++  +ET+     +  L  A
Sbjct: 246 LAPREGERILDACAAPGGKTAHLWALGATRLDALDRSAERLNRVRETLERQGGEVHLQAA 305

Query: 91  TFSQLQDYVPDKGVDGVVFD 110
             ++   +   +  D ++ D
Sbjct: 306 DAAETATWWNGETYDAILLD 325


>gi|160883972|ref|ZP_02064975.1| hypothetical protein BACOVA_01946 [Bacteroides ovatus ATCC 8483]
 gi|237720459|ref|ZP_04550940.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|260172497|ref|ZP_05758909.1| hypothetical protein BacD2_11591 [Bacteroides sp. D2]
 gi|299147049|ref|ZP_07040116.1| methyltransferase, FkbM family [Bacteroides sp. 3_1_23]
 gi|315920791|ref|ZP_07917031.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|156110702|gb|EDO12447.1| hypothetical protein BACOVA_01946 [Bacteroides ovatus ATCC 8483]
 gi|229450210|gb|EEO56001.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|298514934|gb|EFI38816.1| methyltransferase, FkbM family [Bacteroides sp. 3_1_23]
 gi|313694666|gb|EFS31501.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 270

 Score = 35.9 bits (82), Expect = 9.3,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 25/55 (45%), Gaps = 4/55 (7%)

Query: 37  GKVILDATFGAG-GYSR-SFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQ 89
           GKV +D   G   GYS     +   +V   ++D   +   + T   ++++ ++ Q
Sbjct: 117 GKVFVD--VGCAEGYSSLEIIEEAKHVYLFEQDEQWLEAIRATFEPWQDKVTIVQ 169


>gi|37677324|ref|NP_937720.1| tRNA and rRNA cytosine-C5-methylase [Vibrio vulnificus YJ016]
 gi|37201870|dbj|BAC97690.1| tRNA and rRNA cytosine-C5-methylase [Vibrio vulnificus YJ016]
          Length = 415

 Score = 35.9 bits (82), Expect = 9.3,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 28  VIALLNPAPGKVILDATFGAGG---YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82
           V A L+  PG  ++DA  GAGG   +  +       ++A+D + + ++  +E  R   
Sbjct: 228 VAAALDVKPGMRVIDACAGAGGKTLHLAAMMAGKGRLLAMDVEEWKLNNLKERARRAG 285


>gi|33594975|ref|NP_882618.1| hypothetical protein BPP0259 [Bordetella parapertussis 12822]
 gi|33565051|emb|CAE40000.1| conserved hypothetical protein [Bordetella parapertussis]
          Length = 474

 Score = 35.9 bits (82), Expect = 9.4,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 4/85 (4%)

Query: 31  LLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYK---EQFS 86
           LL PA G  +LDA    GG +    ++   +++ALD D   +    + +        +  
Sbjct: 283 LLAPADGMRVLDACAAPGGKTAHLLELADIDLLALDADAQRLERVDQNLERLGLRTPRVR 342

Query: 87  LFQATFSQLQDYVPDKGVDGVVFDL 111
           L  A  S L  +   +  D V+ D+
Sbjct: 343 LAAADASDLDAWWDGRPFDAVLADV 367


>gi|33862825|ref|NP_894385.1| glycine-sarcosine methyltransferase [Prochlorococcus marinus str.
           MIT 9313]
 gi|33634741|emb|CAE20727.1| probable glycine-sarcosine methyltransferase [Prochlorococcus
           marinus str. MIT 9313]
          Length = 280

 Score = 35.9 bits (82), Expect = 9.4,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 3/85 (3%)

Query: 40  ILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYV 99
           +LD   G G +S S  K G +VI+ D  P  ++   +  RD+ +     QA +  L   +
Sbjct: 72  VLDVATGTGFHSVSLLKEGFDVISADGSPNMLARAFQNARDHGQLLRTAQADWRFLNRDI 131

Query: 100 PDKGVDGVVFDLGVS-SMQIDCGDR 123
             +  D V+  LG S +      DR
Sbjct: 132 HGE-FDAVIC-LGNSFTHLFREHDR 154


>gi|189194583|ref|XP_001933630.1| trimethylguanosine synthase [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187979194|gb|EDU45820.1| trimethylguanosine synthase [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 240

 Score = 35.9 bits (82), Expect = 9.5,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 10/74 (13%)

Query: 11  SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDP 68
             I + I  H+     +      P    VI+DA  G GG + +  + G    V A+++DP
Sbjct: 54  EPIANKIAAHIS----ES----APKEKTVIVDAFAGVGGNAIALARSGRWERVFAIEKDP 105

Query: 69  FAVSCGQETMRDYK 82
             + C +     Y 
Sbjct: 106 KTLMCAKHNAEIYG 119


>gi|120404406|ref|YP_954235.1| precorrin-6Y C5,15-methyltransferase subunit CbiT [Mycobacterium
           vanbaalenii PYR-1]
 gi|119957224|gb|ABM14229.1| precorrin-6Y C5,15-methyltransferase (decarboxylating)
           [Mycobacterium vanbaalenii PYR-1]
          Length = 395

 Score = 35.9 bits (82), Expect = 9.5,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 47/141 (33%), Gaps = 16/141 (11%)

Query: 28  VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQF 85
            +A L P PG+++ D   G+G  S  +C+ G     IA +RD    +   E    +    
Sbjct: 234 TLAALAPRPGELLWDVGAGSGSISIEWCRSGPGCRAIAFERDEARRARITENAVAHGAGV 293

Query: 86  SLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISAS 145
            +    F   + +        V    GVS   +                 R+   G   +
Sbjct: 294 EV---RFDAPESFDSSPPPAAVFVGGGVSRPGMIDACW-----------ERLGPGGRLVA 339

Query: 146 DVVNQANVKDLTRILGILGEE 166
           + V   +   L +    +G E
Sbjct: 340 NAVTVESEAVLAQWYSRVGGE 360


>gi|332184589|gb|AEE26843.1| Beta-hexosaminidase [Francisella cf. novicida 3523]
          Length = 378

 Score = 35.9 bits (82), Expect = 9.6,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 43/103 (41%), Gaps = 5/103 (4%)

Query: 138 SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR--QSAPFQTTQDLSSLI 195
           + S + A+D+ N    K+L   + +L E K    +   ++ R+  ++ P   +  +  ++
Sbjct: 218 NDSHLGAADITNTWTEKELIPYIKLLPENKHCMVMTAHVMNRKIDETNPATLSSKIIKIL 277

Query: 196 QKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238
           +  + F  +  I       +A+  +   E+E L   + +    
Sbjct: 278 RTDIKF--DGVIISDAMEMKAVTEYY-GELESLKLAINAGVNM 317


>gi|150400573|ref|YP_001324339.1| putative RNA methylase [Methanococcus aeolicus Nankai-3]
 gi|150013276|gb|ABR55727.1| putative RNA methylase [Methanococcus aeolicus Nankai-3]
          Length = 264

 Score = 35.9 bits (82), Expect = 9.6,   Method: Composition-based stats.
 Identities = 18/106 (16%), Positives = 34/106 (32%), Gaps = 20/106 (18%)

Query: 20  HVPVLLE--------KVIALLNPAPGKVILDATFGAGGYSRSFC-----KMGSNVIALDR 66
           H  +LL+        + I      P  ++ D   G G            +    V AL+ 
Sbjct: 11  HYSMLLDTDRVAVFKEAIEQ-TVKPNDIVYD--LGTG---SGILAMVASQKAKKVYALEL 64

Query: 67  DPFAVSCGQETMRDYK-EQFSLFQATFSQLQDYVPDKGVDGVVFDL 111
           DP      +E ++    E         +   +Y   +  D ++ +L
Sbjct: 65  DPITCMYAKENLKINDYENIKNINLIEADASEYNFKEQADVIIAEL 110


>gi|206901460|ref|YP_002250835.1| putative L-glutaminyl-2-N-methyltransferase StsG [Dictyoglomus
          thermophilum H-6-12]
 gi|206740563|gb|ACI19621.1| putative L-glutaminyl-2-N-methyltransferase StsG [Dictyoglomus
          thermophilum H-6-12]
          Length = 252

 Score = 35.9 bits (82), Expect = 9.7,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 32 LNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQF 85
          L+   G +ILD   G G ++    K G   I +DR    +   +E     K++ 
Sbjct: 40 LSIKRGHLILDLGCGFGRHTLELGKRGYRTIGIDRSEDLIEIAKE--EAKKDRV 91


>gi|167572849|ref|ZP_02365723.1| hypothetical protein BoklC_23638 [Burkholderia oklahomensis C6786]
          Length = 248

 Score = 35.9 bits (82), Expect = 9.7,   Method: Composition-based stats.
 Identities = 16/100 (16%), Positives = 30/100 (30%), Gaps = 6/100 (6%)

Query: 26  EKVIALLNPAPGKVILDATFGAGGYS---RSFCKMGSNVIALDRDPFAVSCGQETMRDYK 82
            +++      P   +LD   G GG S            V+A+D+   A+          +
Sbjct: 7   RRLLESARLRPSMRVLDIGCGTGGVSMLAAEMVGPTGTVVAIDQSDIAIDAATANAE--R 64

Query: 83  EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGD 122
            +    +     L         D V+    V   Q+   +
Sbjct: 65  ARLHNIRFRACGLDQVEGVHSFDVVIARC-VLMHQLHVAE 103


>gi|254509818|ref|ZP_05121885.1| Fmu (Sun) [Rhodobacteraceae bacterium KLH11]
 gi|221533529|gb|EEE36517.1| Fmu (Sun) [Rhodobacteraceae bacterium KLH11]
          Length = 419

 Score = 35.9 bits (82), Expect = 9.8,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 37/87 (42%), Gaps = 7/87 (8%)

Query: 29  IALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLF 88
           + +L P PG+ +LD     GG +      G++V ALD     ++   + ++    + ++ 
Sbjct: 221 VQVLAPKPGEKVLDLCAAPGGKTLQLAAAGADVTALDISEARLARVHDNLQRTGLKATVI 280

Query: 89  QATFSQLQDYVPDKG-VDGVVFDLGVS 114
            A      D +   G  D ++ D   S
Sbjct: 281 AA------DALDHHGQYDAILLDAPCS 301


>gi|161525683|ref|YP_001580695.1| type 11 methyltransferase [Burkholderia multivorans ATCC 17616]
 gi|160343112|gb|ABX16198.1| Methyltransferase type 11 [Burkholderia multivorans ATCC 17616]
          Length = 359

 Score = 35.9 bits (82), Expect = 9.8,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 17/52 (32%), Gaps = 3/52 (5%)

Query: 38 KVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSL 87
            ++D   G  GYS          +    D D  A+    E       QF++
Sbjct: 31 GHVVDCACGI-GYSSEVLAAAGVQSYQGFDIDEQAIQHAIERFATDGRQFAV 81


>gi|116753346|ref|YP_842464.1| protein of unknown function Met10 [Methanosaeta thermophila PT]
 gi|116664797|gb|ABK13824.1| methyltransferase [Methanosaeta thermophila PT]
          Length = 328

 Score = 35.9 bits (82), Expect = 9.9,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 1/79 (1%)

Query: 33  NPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATF 92
              PG +++D   G G +S    K G+ VIA+D++P A    +E  R  +    + +   
Sbjct: 163 QVRPGDLVVDMFAGVGPFSLLMAKRGARVIAIDKNPCAAKLLKENARMNRLDVEIREGDA 222

Query: 93  SQLQDYVPDKGVDGVVFDL 111
           S L + + D   D VV +L
Sbjct: 223 SSLTEDLAD-KADHVVMNL 240


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.312    0.162    0.517 

Lambda     K      H
   0.267   0.0494    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,755,299,666
Number of Sequences: 14124377
Number of extensions: 307416734
Number of successful extensions: 844039
Number of sequences better than 10.0: 4041
Number of HSP's better than 10.0 without gapping: 5322
Number of HSP's successfully gapped in prelim test: 1348
Number of HSP's that attempted gapping in prelim test: 816148
Number of HSP's gapped (non-prelim): 7350
length of query: 341
length of database: 4,842,793,630
effective HSP length: 139
effective length of query: 202
effective length of database: 2,879,505,227
effective search space: 581660055854
effective search space used: 581660055854
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.1 bits)
S2: 82 (35.9 bits)